7835 168 56 43 chr13 16000000 16000715 -103744183 - ERVL LTR ERVL -1512 4252 3547 2078 132 0 20 chr13 16000715 16001019 -103743879 - AluSx SINE Alu -14 298 1 7835 168 56 43 chr13 16001019 16001823 -103743075 - ERVL LTR ERVL -2217 3547 2714 2005 157 0 3 chr13 16001828 16002140 -103742758 + AluJb SINE Alu 1 311 -1 198 0 0 0 chr13 16002148 16002170 -103742728 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr13 16002347 16002369 -103742529 + (A)n Simple_repeat Simple_repeat 1 22 0 6590 188 47 21 chr13 16002379 16003304 -103741594 - ERVL LTR ERVL -3042 2722 1754 2137 124 0 35 chr13 16003304 16003618 -103741280 + AluSx SINE Alu 1 303 -9 6590 188 47 21 chr13 16003618 16003966 -103740932 - ERVL LTR ERVL -4010 1754 1416 547 136 48 0 chr13 16004041 16004144 -103740754 + AluSg/x SINE Alu 203 310 0 1568 207 4 0 chr13 16004144 16004424 -103740474 - ERVL LTR ERVL -4402 1362 1082 331 130 0 0 chr13 16004424 16004470 -103740428 - Alu SINE Alu -8 292 247 397 206 152 0 chr13 16004570 16004662 -103740236 - ERVL LTR ERVL -4746 1018 913 2174 127 0 3 chr13 16004692 16005000 -103739898 + AluSq SINE Alu 1 307 -6 1274 198 48 17 chr13 16005457 16005750 -103739148 + Charlie1b DNA MER1_type 6 307 -216 264 258 21 21 chr13 16005859 16005956 -103738942 + L1MC4a LINE L1 7244 7340 -468 478 181 181 0 chr13 16005986 16006091 -103738807 - FLAM_A SINE Alu -9 124 1 1966 142 0 0 chr13 16006118 16006419 -103738479 - AluSx SINE Alu 0 301 1 2285 94 0 7 chr13 16006640 16006927 -103737971 - AluSx SINE Alu -7 305 21 901 195 40 0 chr13 16006933 16007107 -103737791 - L1MC1 LINE L1 -8 6325 6145 353 276 77 32 chr13 16007108 16007329 -103737569 - MER20B DNA MER1_type -48 735 505 810 169 0 22 chr13 16007401 16007537 -103737361 + AluJo SINE Alu 3 135 -177 1284 169 56 91 chr13 16007566 16007886 -103737012 + AluJo SINE Alu 1 309 -3 592 155 4 0 chr13 16007905 16008012 -103736886 + L1M4c LINE L1 2322 2431 -3951 327 226 0 14 chr13 16008034 16008140 -103736758 - L1MCa LINE L1 -1339 6983 2006 2137 104 10 3 chr13 16008141 16008430 -103736468 - AluSq SINE Alu -22 291 1 805 130 26 0 chr13 16008451 16008566 -103736332 - FLAM_C SINE Alu -25 118 1 2018 188 12 22 chr13 16008567 16008972 -103735926 - MER74A LTR ERVL -13 545 145 424 218 16 89 chr13 16009078 16009202 -103735696 - MER74A LTR ERVL -423 135 21 2231 118 0 3 chr13 16009205 16009511 -103735387 + AluSx SINE Alu 1 305 -7 1262 218 92 13 chr13 16009511 16009951 -103734947 + L1MB3 LINE L1 5659 6119 -2 2334 82 0 3 chr13 16009951 16010243 -103734655 - AluSq SINE Alu -22 291 1 22 0 0 0 chr13 16010629 16010651 -103734247 + AT_rich Low_complexity Low_complexity 1 22 0 1611 142 85 21 chr13 16010651 16010932 -103733966 - AluJb SINE Alu -13 299 1 296 47 0 0 chr13 16010941 16010984 -103733914 - L1MB3 LINE L1 -2 6181 6139 1123 69 0 0 chr13 16011028 16011159 -103733739 - AluSg SINE Alu -179 131 1 1653 171 13 38 chr13 16011162 16011333 -103733565 - AluJo SINE Alu -4 308 147 2204 126 3 0 chr13 16011333 16011642 -103733256 - AluSq SINE Alu -3 310 1 1653 171 13 38 chr13 16011642 16011786 -103733112 - AluJo SINE Alu -165 147 1 1521 167 9 65 chr13 16011787 16011880 -103733018 - L1MB2 LINE L1 -2 6169 6072 2453 77 3 0 chr13 16011880 16012180 -103732718 - AluSp SINE Alu -11 302 2 1521 167 9 65 chr13 16012180 16012427 -103732471 - L1MB2 LINE L1 -99 6072 5848 1376 203 16 4 chr13 16012439 16012695 -103732203 + AluJo SINE Alu 14 272 -40 2128 76 69 0 chr13 16012741 16013018 -103731880 + AluSg1 SINE Alu 1 296 -13 1341 163 34 0 chr13 16013034 16013267 -103731631 - L1MB2 LINE L1 -329 5854 5614 616 159 152 8 chr13 16013267 16013399 -103731499 + MLT1A1 LTR MaLR 1 151 -214 248 233 33 0 chr13 16013515 16013575 -103731323 - L1MB2 LINE L1 -999 5147 5086 424 160 13 0 chr13 16013577 16013652 -103731246 - AluY SINE Alu -123 188 113 409 214 10 19 chr13 16013751 16013854 -103731044 - AluSp/q SINE Alu -12 301 200 312 83 0 21 chr13 16013974 16014022 -103730876 + Alu SINE Alu 32 78 -222 379 243 38 84 chr13 16014118 16014251 -103730647 + L1M4c LINE L1 1768 1906 -4478 2126 115 0 7 chr13 16014251 16014570 -103730328 + AluSx SINE Alu 3 319 0 379 243 38 84 chr13 16014570 16014627 -103730271 + L1M4c LINE L1 1906 1964 -4420 422 192 211 19 chr13 16014627 16014731 -103730167 - FLAM_A SINE Alu -9 124 1 379 243 38 84 chr13 16014731 16014850 -103730048 + L1M4c LINE L1 1964 2158 -4226 326 146 0 0 chr13 16014845 16014893 -103730005 + L1MB2 LINE L1 5420 5467 -704 * 1945 146 0 77 chr13 16014917 16015142 -103729756 - MER47A DNA MER2_type -1957 366 178 2089 126 17 3 chr13 16015142 16015435 -103729463 - AluSq SINE Alu -16 297 1 1945 146 0 77 chr13 16015435 16015572 -103729326 - MER47A DNA MER2_type -2145 178 32 1985 119 51 0 chr13 16015602 16015896 -103729002 + AluSq SINE Alu 1 309 -4 1201 156 15 65 chr13 16015934 16016115 -103728783 + L1MB2 LINE L1 5479 5645 -538 2345 129 36 80 chr13 16016115 16016563 -103728335 - MSTC LTR MaLR 0 428 1 1201 156 15 65 chr13 16016563 16016644 -103728254 + L1MB2 LINE L1 5645 5728 -455 410 197 0 0 chr13 16016866 16016937 -103727961 + MER5A DNA MER1_type 1 71 -118 2392 77 3 19 chr13 16016940 16017253 -103727645 + AluY SINE Alu 1 308 -3 2218 88 7 0 chr13 16017270 16017553 -103727345 + AluSx SINE Alu 13 297 -15 353 241 0 0 chr13 16017553 16017632 -103727266 + L1MB2 LINE L1 5930 6008 -163 * 773 179 32 105 chr13 16017631 16017910 -103726988 + L1M4c LINE L1 2260 2521 -3861 1579 230 38 99 chr13 16018024 16018701 -103726197 + L1M4c LINE L1 2484 3099 -3283 2562 54 0 3 chr13 16018701 16018996 -103725902 - AluY SINE Alu -17 294 1 1579 230 38 99 chr13 16018996 16019107 -103725791 + L1M4c LINE L1 3099 3215 -3167 1528 191 3 28 chr13 16019107 16019390 -103725508 + AluJo SINE Alu 1 276 -36 2101 100 3 47 chr13 16019393 16019712 -103725186 - AluSg SINE Alu -3 307 3 189 0 0 0 chr13 16019729 16019750 -103725148 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1881 113 64 18 chr13 16020242 16020524 -103724374 - AluSx SINE Alu -17 295 1 369 250 180 8 chr13 16020815 16020943 -103723955 - MER5A DNA MER1_type -6 183 34 586 135 0 11 chr13 16021007 16021096 -103723802 + AluJ/FLAM SINE Alu 4 91 -221 873 145 132 7 chr13 16021097 16021249 -103723649 + AluJb SINE Alu 1 171 -141 1908 161 0 0 chr13 16021249 16021522 -103723376 - AluJo SINE Alu -39 273 1 2384 38 0 0 chr13 16021524 16021790 -103723108 - AluY SINE Alu -12 299 34 1625 167 17 17 chr13 16022531 16022824 -103722074 + AluJb SINE Alu 13 305 -7 2039 79 64 4 chr13 16023384 16023679 -103721219 + AluSq SINE Alu 1 311 0 1863 148 7 0 chr13 16024089 16024403 -103720495 + AluSq SINE Alu 1 316 0 1808 173 3 3 chr13 16024498 16024793 -103720105 + AluJb SINE Alu 1 295 -17 1849 153 10 3 chr13 16024808 16025103 -103719795 + AluJb SINE Alu 1 297 -15 383 176 47 0 chr13 16025330 16025415 -103719483 - Charlie1a DNA MER1_type -459 996 908 1966 143 7 3 chr13 16025417 16025703 -103719195 + AluSx SINE Alu 3 289 -23 951 190 0 11 chr13 16025717 16025891 -103719007 - FRAM SINE Alu -12 164 1 1583 208 139 47 chr13 16025936 16026533 -103718365 - Charlie1a DNA MER1_type -550 905 254 1211 259 110 77 chr13 16026528 16027189 -103717709 + MER21B LTR ERV1 27 709 -154 * 416 234 341 0 chr13 16027220 16027387 -103717511 - Charlie1a DNA MER1_type -1177 278 55 2128 113 3 3 chr13 16027741 16028033 -103716865 + AluSq SINE Alu 1 292 -21 1695 90 9 0 chr13 16028421 16028643 -103716255 - AluSq SINE Alu -89 224 1 895 210 46 50 chr13 16028647 16028928 -103715970 + L1MC5 LINE L1 7154 7433 -528 1866 143 0 41 chr13 16028928 16029242 -103715656 + AluSx SINE Alu 1 301 -11 602 234 54 36 chr13 16029314 16029428 -103715470 + MER45A DNA AcHobo 1 120 -1461 2463 84 7 0 chr13 16029428 16029738 -103715160 + AluSp SINE Alu 2 313 0 602 234 54 36 chr13 16029738 16029790 -103715108 + MER45A DNA AcHobo 120 170 -8 290 179 0 15 chr13 16029878 16029945 -103714953 + (TA)n Simple_repeat Simple_repeat 1 66 0 234 222 99 0 chr13 16029946 16030027 -103714871 + L1MC4 LINE L1 6614 6702 -1340 2008 114 7 29 chr13 16030027 16030333 -103714565 - AluSq SINE Alu -14 299 1 844 165 0 0 chr13 16030609 16030742 -103714156 - AluJb SINE Alu -22 290 158 2161 180 99 61 chr13 16030750 16031301 -103713597 + LTR12 LTR ERV1 1 488 -226 1377 172 20 24 chr13 16031301 16031598 -103713300 - AluY SINE Alu -15 296 1 2161 180 99 61 chr13 16031598 16031628 -103713270 + LTR12 LTR ERV1 488 515 -199 235 94 38 75 chr13 16031735 16031788 -103713110 - Charlie1a DNA MER1_type -697 758 708 1617 170 0 51 chr13 16031816 16032127 -103712771 - AluJo SINE Alu -17 295 1 1897 170 19 43 chr13 16032127 16032435 -103712463 - Charlie1a DNA MER1_type -2049 712 413 2075 103 55 0 chr13 16032435 16032727 -103712171 - AluSx SINE Alu -4 308 1 1897 170 19 43 chr13 16032727 16032789 -103712109 - Charlie1a DNA MER1_type -2348 413 351 201 195 0 0 chr13 16032789 16032830 -103712068 + (CATATA)n Simple_repeat Simple_repeat 3 43 0 2245 99 3 3 chr13 16032901 16033193 -103711705 - AluSp SINE Alu -21 292 1 2273 95 0 14 chr13 16033196 16033491 -103711407 - AluSc SINE Alu -18 291 1 688 276 50 40 chr13 16033492 16033626 -103711272 - Charlie1a DNA MER1_type -2461 300 169 2110 131 7 3 chr13 16033626 16033931 -103710967 - AluSx SINE Alu -6 306 1 688 276 50 40 chr13 16033931 16033999 -103710899 - Charlie1a DNA MER1_type -2592 169 103 2335 167 17 32 chr13 16033999 16034278 -103710620 + MER65C LTR ERV1 1 272 -189 2415 82 0 0 chr13 16034278 16034570 -103710328 - AluY SINE Alu -18 293 2 2335 167 17 32 chr13 16034570 16034758 -103710140 + MER65C LTR ERV1 272 461 0 688 276 50 40 chr13 16034758 16034851 -103710047 - Charlie1a DNA MER1_type -2658 103 1 895 225 147 55 chr13 16035070 16035462 -103709436 - MER57A LTR ERV1 -2 401 1 2012 122 0 60 chr13 16035467 16035604 -103709294 + AluSx SINE Alu 1 145 -167 2097 127 0 16 chr13 16035604 16035911 -103708987 + AluSx SINE Alu 1 302 -10 2012 122 0 60 chr13 16035911 16036092 -103708806 + AluSx SINE Alu 145 300 -12 527 315 108 7 chr13 16036098 16036393 -103708505 - L1MEc LINE L1 -5972 424 100 2232 122 0 28 chr13 16036396 16036575 -103708323 - AluSx SINE Alu -1 311 128 2614 64 0 0 chr13 16036575 16036886 -103708012 - AluY SINE Alu 0 311 1 2381 94 0 3 chr13 16036888 16037197 -103707701 - AluSg SINE Alu -2 308 1 2232 122 0 28 chr13 16037197 16037334 -103707564 - AluSx SINE Alu -185 127 1 1843 161 51 106 chr13 16037474 16037583 -103707315 - MER67A LTR ERV1 0 543 430 1472 174 51 11 chr13 16037583 16037858 -103707040 + AluJo SINE Alu 1 286 -26 1843 161 51 106 chr13 16037858 16037870 -103707028 - MER67A LTR ERV1 -113 430 419 2059 107 3 17 chr13 16037870 16038005 -103706893 + AluSx SINE Alu 3 138 -174 2311 113 3 0 chr13 16038005 16038316 -103706582 + AluSp SINE Alu 1 312 -1 2059 107 3 17 chr13 16038316 16038469 -103706429 + AluSx SINE Alu 138 287 -25 2240 95 3 29 chr13 16038470 16038785 -103706113 + AluSg SINE Alu 1 307 -3 1843 161 51 106 chr13 16038785 16039131 -103705767 - MER67A LTR ERV1 -123 420 99 2143 122 6 10 chr13 16039131 16039443 -103705455 + AluSx SINE Alu 1 311 -1 1157 151 0 0 chr13 16039443 16039609 -103705289 + AluSg/x SINE Alu 126 291 -21 1948 153 0 16 chr13 16039620 16039933 -103704965 + AluJo SINE Alu 1 308 -4 183 42 0 0 chr13 16039988 16040012 -103704886 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1966 85 0 0 chr13 16040014 16040249 -103704649 - AluSg SINE Alu -75 235 1 2278 103 7 0 chr13 16040307 16040607 -103704291 - AluSp SINE Alu -11 302 1 1321 95 0 0 chr13 16040609 16040777 -103704121 - AluSg/x SINE Alu -10 302 135 3606 81 35 2 chr13 16041004 16041488 -103703410 - LTR3b LTR ERVK 0 500 1 2356 90 3 16 chr13 16042581 16042891 -103702007 - AluSx SINE Alu -5 307 2 342 82 260 14 chr13 16042913 16042986 -103701912 - HY1 scRNA scRNA -11 101 11 2013 131 35 7 chr13 16043007 16043297 -103701601 - AluJb SINE Alu -14 298 1 1786 128 115 10 chr13 16043359 16043664 -103701234 - MER1B DNA MER1_type 0 337 1 2047 132 7 23 chr13 16043922 16044093 -103700805 - AluSx SINE Alu -7 305 140 2119 121 16 3 chr13 16044093 16044400 -103700498 - AluSq SINE Alu 0 313 3 2047 132 7 23 chr13 16044400 16044538 -103700360 - AluSx SINE Alu -172 140 1 1978 148 3 0 chr13 16045006 16045296 -103699602 - AluSc SINE Alu -18 291 1 2138 83 57 20 chr13 16045331 16045651 -103699247 + AluSq SINE Alu 1 313 0 530 248 24 0 chr13 16045710 16045835 -103699063 - FLAM_A SINE Alu -4 129 2 2058 138 3 0 chr13 16046182 16046480 -103698418 - AluSx SINE Alu -13 299 1 737 179 8 0 chr13 16046653 16046770 -103698128 + FLAM_C SINE Alu 1 118 -15 189 0 0 0 chr13 16046774 16046795 -103698103 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 16046956 16046978 -103697920 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 16047152 16047190 -103697708 + AT_rich Low_complexity Low_complexity 1 38 0 2195 122 0 0 chr13 16047508 16047804 -103697094 - AluSx SINE Alu -16 296 1 620 126 110 176 chr13 16048957 16049028 -103695870 + L1MB8 LINE L1 5360 5434 -750 2206 125 0 6 chr13 16049028 16049340 -103695558 + AluSx SINE Alu 1 310 -2 620 126 110 176 chr13 16049340 16049424 -103695474 + L1MB8 LINE L1 5434 5494 -690 1888 160 0 19 chr13 16049424 16049742 -103695156 + AluSx SINE Alu 1 312 0 620 126 110 176 chr13 16049742 16049840 -103695058 + L1MB8 LINE L1 5494 5597 -587 1220 123 22 0 chr13 16049859 16050038 -103694860 + AluSg/x SINE Alu 121 303 -9 1928 191 66 41 chr13 16050043 16050140 -103694758 + L1MB8 LINE L1 5580 5673 -505 2195 96 0 13 chr13 16050140 16050441 -103694457 + AluSg1 SINE Alu 1 297 -12 1928 191 66 41 chr13 16050441 16050826 -103694072 + L1MB8 LINE L1 5673 6074 -104 254 100 60 0 chr13 16050821 16050871 -103694027 + L1MB7 LINE L1 6132 6184 0 * 23 68 0 0 chr13 16051356 16051400 -103693498 + AT_rich Low_complexity Low_complexity 1 44 0 2491 45 41 0 chr13 16051415 16051707 -103693191 + AluY SINE Alu 1 304 -7 2259 77 0 0 chr13 16051857 16052142 -103692756 + AluSx SINE Alu 1 285 -27 738 318 82 23 chr13 16052186 16052529 -103692369 - L2 LINE L2 -581 2733 2371 484 149 11 23 chr13 16052540 16052627 -103692271 + Tigger3(Golem) DNA MER2_type 13 98 -2931 807 167 48 12 chr13 16052627 16052795 -103692103 + AluJb SINE Alu 135 308 -4 309 241 86 69 chr13 16052799 16052915 -103691983 - HAL1 LINE L1 -23 2484 2367 32 57 0 0 chr13 16052915 16052968 -103691930 + AT_rich Low_complexity Low_complexity 1 53 0 1584 153 21 28 chr13 16052968 16053255 -103691643 - AluJb SINE Alu -26 286 2 828 233 18 0 chr13 16053261 16053424 -103691474 - FAM SINE Alu -9 166 1 436 247 37 74 chr13 16053432 16053622 -103691276 - HAL1 LINE L1 -131 2376 2194 895 194 56 6 chr13 16053635 16053815 -103691083 - MER20 DNA MER1_type -30 189 1 922 191 0 0 chr13 16054045 16054207 -103690691 - AluJb SINE Alu -17 295 134 1509 122 95 8 chr13 16054214 16054476 -103690422 - AluSg SINE Alu -25 285 1 2188 78 41 0 chr13 16054499 16054792 -103690106 - AluY SINE Alu -6 305 1 1809 158 7 0 chr13 16054794 16055086 -103689812 - AluJb SINE Alu -14 298 5 2050 90 43 13 chr13 16055180 16055480 -103689418 + AluSx SINE Alu 1 309 -3 243 0 0 0 chr13 16055584 16055611 -103689287 + (A)n Simple_repeat Simple_repeat 1 27 0 2144 96 0 7 chr13 16055653 16055954 -103688944 - AluSx SINE Alu -13 299 1 2035 123 3 0 chr13 16056122 16056422 -103688476 - AluSx SINE Alu -11 301 1 1113 193 148 37 chr13 16056558 16056828 -103688070 - AluJo SINE Alu 0 302 3 616 267 107 21 chr13 16057071 16057352 -103687546 - L1M4 LINE L1 -1116 5030 4726 783 202 31 73 chr13 16057365 16057652 -103687246 + L1M4 LINE L1 4954 5228 -918 817 143 0 84 chr13 16057655 16057771 -103687127 + FLAM_C SINE Alu 2 103 -209 2112 99 7 10 chr13 16057771 16058074 -103686824 - AluSq SINE Alu -11 302 1 817 143 0 84 chr13 16058074 16058111 -103686787 + FLAM_C SINE Alu 103 142 -170 267 149 0 24 chr13 16058115 16058191 -103686707 + L1M4 LINE L1 5227 5300 -846 235 280 0 0 chr13 16058293 16058343 -103686555 - MER5A DNA MER1_type -106 83 34 593 135 0 11 chr13 16058407 16058496 -103686402 + AluJ/FLAM SINE Alu 4 91 -221 810 145 132 7 chr13 16058497 16058649 -103686249 + AluJb SINE Alu 1 171 -141 1813 158 0 0 chr13 16058649 16058922 -103685976 - AluJo SINE Alu -39 273 1 1953 127 31 0 chr13 16058924 16059215 -103685683 - AluSx SINE Alu -12 300 1 1958 136 10 0 chr13 16059245 16059555 -103685343 + MER47A DNA MER2_type 1 313 -53 258 260 0 55 chr13 16059598 16059671 -103685227 + MER47A DNA MER2_type 298 366 0 * 363 71 36 18 chr13 16059671 16059724 -103685174 + Charlie1a DNA MER1_type 757 810 -645 1949 129 7 0 chr13 16059730 16060025 -103684873 - AluSp SINE Alu -16 297 1 2211 112 0 0 chr13 16060076 16060388 -103684510 - AluSx SINE Alu 0 312 1 261 122 0 0 chr13 16060399 16060440 -103684458 + Charlie1a DNA MER1_type 832 872 -583 1029 165 67 0 chr13 16060460 16060654 -103684244 + AluJb SINE Alu 87 293 -19 739 218 47 5 chr13 16060671 16060864 -103684034 + Charlie1a DNA MER1_type 1055 1255 -200 322 191 17 26 chr13 16060907 16061022 -103683876 + T-rich Low_complexity Low_complexity 5 118 0 209 0 65 0 chr13 16061022 16061053 -103683845 + (TC)n Simple_repeat Simple_repeat 1 33 0 607 177 35 0 chr13 16061054 16061167 -103683731 - AluSg/x SINE Alu -5 305 189 2022 109 3 0 chr13 16061170 16061454 -103683444 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr13 16061454 16061475 -103683423 + (CA)n Simple_repeat Simple_repeat 2 22 0 1130 153 0 0 chr13 16061475 16061645 -103683253 + AluSg/x SINE Alu 129 298 -12 757 136 0 0 chr13 16061690 16061800 -103683098 + FLAM_C SINE Alu 2 111 -32 1932 126 26 0 chr13 16061816 16062118 -103682780 - AluSx SINE Alu 0 312 3 2305 61 0 10 chr13 16062274 16062571 -103682327 + AluY SINE Alu 1 294 -17 473 200 11 0 chr13 16062578 16062673 -103682225 + MER66A LTR ERV1 287 382 -96 1087 133 0 22 chr13 16062674 16062691 -103682207 + AluSq SINE Alu 120 136 -177 2198 101 0 7 chr13 16062691 16062997 -103681901 + AluSg SINE Alu 1 304 -6 1087 133 0 22 chr13 16062997 16063159 -103681739 + AluSq SINE Alu 136 295 -18 2034 107 3 3 chr13 16063206 16063505 -103681393 + AluSc SINE Alu 2 300 -9 336 266 150 9 chr13 16063531 16063644 -103681254 + MIR SINE MIR 16 144 -64 366 258 148 19 chr13 16063650 16063805 -103681093 + L1MB4 LINE L1 5444 5618 -2190 371 191 0 0 chr13 16063882 16063945 -103680953 - L1MC4 LINE L1 -1340 6702 6640 1579 178 20 13 chr13 16063946 16064249 -103680649 - AluJb SINE Alu -7 305 1 1093 119 0 99 chr13 16064273 16064475 -103680423 + AluSx SINE Alu 1 182 -130 263 94 0 0 chr13 16064477 16064509 -103680389 + Alu SINE Alu 18 49 -251 2100 98 3 0 chr13 16064509 16064794 -103680104 + AluSq SINE Alu 18 303 -10 1158 141 0 0 chr13 16064796 16064973 -103679925 + AluSq SINE Alu 136 312 -1 2137 105 3 0 chr13 16065155 16065451 -103679447 - AluSx SINE Alu -15 297 1 708 153 0 8 chr13 16065474 16065592 -103679306 - AluSg/x SINE Alu -13 299 183 410 203 0 0 chr13 16065593 16065657 -103679241 - AluS SINE Alu -239 64 1 979 224 97 52 chr13 16065683 16066032 -103678866 - MLT1A1 LTR MaLR 0 365 1 879 214 0 37 chr13 16066121 16066308 -103678590 + AluJb SINE Alu 126 305 -7 1789 138 35 18 chr13 16066311 16066611 -103678287 + L1MB4 LINE L1 5831 6139 -41 2288 67 0 20 chr13 16066611 16066910 -103677988 + AluSc SINE Alu 1 293 -16 1789 138 35 18 chr13 16066910 16066949 -103677949 + L1MB4 LINE L1 6139 6176 -4 26 0 0 27 chr13 16066966 16066988 -103677910 + AT_rich Low_complexity Low_complexity 1 23 -13 1681 117 98 0 chr13 16066988 16067252 -103677646 - AluSx SINE Alu -22 290 1 26 0 0 27 chr13 16067252 16067266 -103677632 + AT_rich Low_complexity Low_complexity 23 36 0 815 169 0 0 chr13 16067272 16067402 -103677496 - AluJb SINE Alu -30 282 153 2242 193 23 25 chr13 16067420 16067732 -103677166 - L1M4 LINE L1 -981 5165 4853 2129 129 0 0 chr13 16067732 16068035 -103676863 + AluSx SINE Alu 1 303 -9 2242 193 23 25 chr13 16068035 16068245 -103676653 - L1M4 LINE L1 -1293 4853 4644 2001 112 0 11 chr13 16068263 16068540 -103676358 - AluSp SINE Alu -35 278 5 257 108 0 0 chr13 16068540 16068577 -103676321 - L1M4 LINE L1 -1605 4541 4505 1045 160 10 10 chr13 16068578 16068778 -103676120 - AluJb SINE Alu -5 307 108 1527 171 15 0 chr13 16068800 16069074 -103675824 + AluSx SINE Alu 30 307 -5 702 161 0 0 chr13 16069155 16069267 -103675631 - AluSg/x SINE Alu -13 297 186 2068 109 3 3 chr13 16069784 16070078 -103674820 - AluSg1 SINE Alu -14 295 2 364 184 89 16 chr13 16070092 16070233 -103674665 + L1ME LINE L1 5197 5345 -801 840 145 0 0 chr13 16070257 16070388 -103674510 - FLAM_C SINE Alu -1 132 2 324 176 44 15 chr13 16070389 16070457 -103674441 + L1ME LINE L1 5492 5561 -603 1683 164 21 0 chr13 16070496 16070783 -103674115 - AluSx SINE Alu -16 296 4 1585 194 3 13 chr13 16070787 16071096 -103673802 - AluJo SINE Alu -6 306 1 2267 91 0 0 chr13 16071628 16071925 -103672973 - AluSx SINE Alu -15 297 1 545 230 40 8 chr13 16072072 16072198 -103672700 - FLAM_A SINE Alu -3 130 1 711 219 20 13 chr13 16072249 16072400 -103672498 - FRAM SINE Alu -14 162 11 338 97 0 32 chr13 16072758 16072820 -103672078 - L1PA16 LINE L1 -9 6157 6098 2109 100 43 0 chr13 16072822 16073121 -103671777 - AluSx SINE Alu 0 312 1 475 130 0 0 chr13 16073503 16073572 -103671326 - AluS SINE Alu -242 70 2 1602 173 3 22 chr13 16073600 16073918 -103670980 - AluSx SINE Alu 0 312 1 315 118 29 59 chr13 16073918 16073935 -103670963 - L1M LINE L1 -861 5323 5307 868 146 0 8 chr13 16073935 16074065 -103670833 - FLAM_C SINE Alu -4 129 1 315 118 29 59 chr13 16074065 16074115 -103670783 - L1M LINE L1 -877 5307 5258 1951 119 3 7 chr13 16074156 16074449 -103670449 + AluSq SINE Alu 1 292 -21 390 156 12 0 chr13 16074453 16074527 -103670371 - L1 LINE L1 -887 5259 5180 375 275 72 62 chr13 16074527 16074720 -103670178 - L1MEd LINE L1 -5231 888 694 2087 183 70 47 chr13 16074742 16075169 -103669729 + MER31A LTR ERV1 1 441 -44 2195 76 10 16 chr13 16075169 16075483 -103669415 - AluSx SINE Alu 0 312 1 2087 183 70 47 chr13 16075483 16075525 -103669373 + MER31A LTR ERV1 441 481 -4 2271 83 10 6 chr13 16075572 16075884 -103669014 - AluSp SINE Alu 0 313 1 568 190 127 16 chr13 16076015 16076346 -103668552 + MER39 LTR ERV1 4 445 -262 765 210 0 0 chr13 16076367 16076505 -103668393 - FRAM SINE Alu -36 140 3 207 0 0 0 chr13 16076511 16076534 -103668364 + (A)n Simple_repeat Simple_repeat 1 23 0 1920 142 17 0 chr13 16076536 16076832 -103668066 + AluSx SINE Alu 1 301 -11 640 254 53 37 chr13 16076832 16077021 -103667877 - MER21B LTR ERV1 -351 512 321 2055 103 13 17 chr13 16077036 16077338 -103667560 - AluSx SINE Alu -11 301 1 1215 97 16 3 chr13 16077404 16077597 -103667301 - LTR56 LTR ERV1 0 445 270 2144 120 0 7 chr13 16077605 16077913 -103666985 + AluSx SINE Alu 6 311 -1 820 154 0 0 chr13 16077915 16078038 -103666860 - AluJo/FLAM SINE Alu -187 125 3 513 155 21 10 chr13 16078038 16078135 -103666763 - LTR56 LTR ERV1 -303 142 45 1258 148 6 107 chr13 16078136 16078367 -103666531 - AluJo SINE Alu 0 312 124 2258 87 0 0 chr13 16078367 16078665 -103666233 + AluY SINE Alu 1 298 -13 1258 148 6 107 chr13 16078665 16078770 -103666128 - AluJo SINE Alu -188 124 10 296 65 0 43 chr13 16078785 16078831 -103666067 - LTR56 LTR ERV1 -394 51 8 305 181 24 60 chr13 16078833 16078916 -103665982 - MER21B LTR ERV1 -655 208 129 277 203 29 58 chr13 16078979 16079048 -103665850 - MER21B LTR ERV1 -755 108 42 566 171 9 9 chr13 16079062 16079167 -103665731 + FRAM SINE Alu 20 124 -52 207 88 0 0 chr13 16079183 16079217 -103665681 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 254 254 45 37 chr13 16079275 16079409 -103665489 - L1MEd LINE L1 -5981 138 4 1269 168 10 69 chr13 16079436 16079555 -103665343 + AluJb SINE Alu 1 125 -187 1926 131 3 7 chr13 16079555 16079860 -103665038 + AluSg SINE Alu 1 304 -6 1269 168 10 69 chr13 16079860 16079894 -103665004 + AluJb SINE Alu 125 159 -153 2149 104 7 0 chr13 16079894 16080191 -103664707 + AluSp SINE Alu 1 299 -14 1269 168 10 69 chr13 16080191 16080340 -103664558 + AluJb SINE Alu 159 286 -26 23 33 0 0 chr13 16080406 16080436 -103664462 + AT_rich Low_complexity Low_complexity 1 30 0 706 279 81 38 chr13 16080440 16080632 -103664266 - L2 LINE L2 -639 2675 2493 2501 52 0 13 chr13 16080632 16080942 -103663956 + AluY SINE Alu 1 306 -5 706 279 81 38 chr13 16080942 16081118 -103663780 - L2 LINE L2 -821 2493 2291 1885 120 43 7 chr13 16081143 16081443 -103663455 - AluSp SINE Alu -2 311 1 205 151 57 19 chr13 16081508 16081561 -103663337 + T-rich Low_complexity Low_complexity 5 59 0 1864 135 26 0 chr13 16081571 16081875 -103663023 - AluSx SINE Alu 0 312 1 1991 117 6 22 chr13 16081930 16082247 -103662651 - AluSx SINE Alu 0 312 1 307 183 19 135 chr13 16082260 16082327 -103662571 + MIR SINE MIR 60 112 -150 2250 87 0 16 chr13 16082327 16082639 -103662259 - AluY SINE Alu -4 307 1 307 183 19 135 chr13 16082639 16082675 -103662223 + MIR SINE MIR 112 151 -111 745 101 10 0 chr13 16082678 16082777 -103662121 + AluSq/x SINE Alu 4 103 -210 771 90 0 0 chr13 16082899 16082999 -103661899 - AluSp/q SINE Alu -19 294 195 229 298 32 21 chr13 16083036 16083130 -103661768 - HAL1 LINE L1 -2003 504 410 422 287 138 11 chr13 16083190 16083371 -103661527 - HAL1 LINE L1 -2198 309 106 1833 130 3 7 chr13 16083434 16083719 -103661179 - AluJb SINE Alu -7 305 22 1692 161 7 3 chr13 16083819 16083996 -103660902 - AluJo SINE Alu -2 310 135 182 61 0 30 chr13 16083996 16084029 -103660869 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1601 156 18 14 chr13 16084029 16084311 -103660587 - AluJo SINE Alu -29 283 1 1692 161 7 3 chr13 16084311 16084437 -103660461 - AluJo SINE Alu -176 136 5 2495 48 0 0 chr13 16084909 16085218 -103659680 - AluY SINE Alu -2 309 1 970 165 0 12 chr13 16085218 16085374 -103659524 - AluSg/x SINE Alu -15 295 140 2115 107 3 0 chr13 16085383 16085674 -103659224 - AluSp SINE Alu -11 302 11 297 285 146 18 chr13 16085683 16085848 -103659050 - MIR SINE MIR -1 261 76 2251 75 0 22 chr13 16085995 16086313 -103658585 - AluY SINE Alu 0 311 1 1844 80 109 4 chr13 16086324 16086598 -103658300 - AluSg SINE Alu -7 303 1 2241 91 3 0 chr13 16087154 16087451 -103657447 - AluY SINE Alu -13 298 1 29 0 0 0 chr13 16087977 16088006 -103656892 + AT_rich Low_complexity Low_complexity 1 29 0 1869 124 0 24 chr13 16088014 16088331 -103656567 + AluSq SINE Alu 1 310 0 32 26 0 0 chr13 16088376 16088415 -103656483 + AT_rich Low_complexity Low_complexity 1 39 0 1908 122 0 34 chr13 16088629 16088956 -103655942 + AluSq SINE Alu 1 317 0 198 0 0 0 chr13 16089706 16089728 -103655170 + (CAT)n Simple_repeat Simple_repeat 1 22 0 261 287 136 10 chr13 16090389 16090550 -103654348 - MIR SINE MIR -32 230 44 1565 183 0 14 chr13 16090560 16090855 -103654043 - AluJo SINE Alu -21 291 1 300 226 89 8 chr13 16091160 16091284 -103653614 - AluSq/x SINE Alu -167 136 3 2099 96 38 0 chr13 16091551 16091842 -103653056 - AluSx SINE Alu -10 302 1 464 286 24 16 chr13 16091842 16091968 -103652930 + HAL1 LINE L1 1039 1165 -1342 252 0 0 0 chr13 16092040 16092068 -103652830 + (TG)n Simple_repeat Simple_repeat 2 29 0 831 206 6 6 chr13 16092089 16092249 -103652649 - FRAM SINE Alu -5 161 2 1681 157 17 27 chr13 16092263 16092556 -103652342 - AluJb SINE Alu -22 290 1 25 75 0 0 chr13 16094277 16094330 -103650568 + GC_rich Low_complexity Low_complexity 1 53 0 1532 95 26 35 chr13 16096235 16096467 -103648431 + MER30 DNA MER1_type 1 230 0 315 263 114 57 chr13 16097001 16097176 -103647722 + MIR SINE MIR 6 190 -72 1054 148 6 0 chr13 16097176 16097345 -103647553 + AluSg/x SINE Alu 130 299 -11 964 163 9 62 chr13 16097451 16097678 -103647220 + AluJo SINE Alu 91 305 -7 276 195 53 62 chr13 16097695 16097808 -103647090 + L1M4 LINE L1 4229 4340 -1806 2385 74 0 0 chr13 16097855 16098154 -103646744 + AluSp SINE Alu 1 299 -14 2198 105 0 0 chr13 16098417 16098713 -103646185 - AluSx SINE Alu -16 296 1 1582 181 37 10 chr13 16098713 16099012 -103645886 + MER65C LTR ERV1 155 461 0 842 249 39 55 chr13 16099030 16099445 -103645453 - L1MC5 LINE L1 -889 6919 6571 2016 116 0 0 chr13 16099532 16099838 -103645060 - AluSx SINE Alu 0 306 1 21 0 0 0 chr13 16099916 16099937 -103644961 + AT_rich Low_complexity Low_complexity 1 21 0 1785 141 13 19 chr13 16100293 16100606 -103644292 + AluJb SINE Alu 1 311 -1 1344 198 32 8 chr13 16100668 16100921 -103643977 - MLT1F1 LTR MaLR -11 556 298 1619 166 63 0 chr13 16100941 16101225 -103643673 - AluJo SINE Alu -10 302 1 244 123 0 53 chr13 16101241 16101298 -103643600 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 397 170 0 20 chr13 16101465 16101565 -103643333 + CT-rich Low_complexity Low_complexity 1 98 0 2066 97 0 67 chr13 16101565 16101895 -103643003 - AluSx SINE Alu -4 308 1 524 244 37 0 chr13 16101897 16102032 -103642866 - MLT1F1 LTR MaLR -427 140 1 366 305 73 13 chr13 16102206 16102357 -103642541 + L1M4 LINE L1 2271 2430 -3716 705 159 153 32 chr13 16102373 16102530 -103642368 - FRAM SINE Alu 0 40 1 318 326 91 23 chr13 16102719 16102894 -103642004 + L1M4 LINE L1 2689 2875 -3271 1190 194 8 28 chr13 16102941 16103188 -103641710 - AluJb SINE Alu -13 299 58 2059 123 3 0 chr13 16103237 16103537 -103641361 + AluSx SINE Alu 1 301 -11 1123 248 111 46 chr13 16103570 16103685 -103641213 - L1MC4 LINE L1 -15 8027 7921 1788 154 7 10 chr13 16103685 16103990 -103640908 + AluSx SINE Alu 1 304 -8 1123 248 111 46 chr13 16103990 16104334 -103640564 - L1MC4 LINE L1 -121 7921 7538 2190 89 0 0 chr13 16104349 16104675 -103640223 - AluSg SINE Alu 0 326 1 190 289 0 0 chr13 16104685 16104737 -103640161 + MER5A DNA MER1_type 136 187 -2 186 167 0 125 chr13 16104850 16104898 -103640000 + MIR SINE MIR 220 261 -1 359 199 82 110 chr13 16104900 16105046 -103639852 + MIR3 SINE MIR 45 186 -22 1658 166 43 7 chr13 16105176 16105355 -103639543 - AluJo SINE Alu 0 312 116 192 40 0 0 chr13 16105355 16105380 -103639518 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1658 166 43 7 chr13 16105380 16105501 -103639397 - AluJo SINE Alu -196 116 1 675 252 41 49 chr13 16105501 16105747 -103639151 - MLT1D LTR MaLR -261 244 1 2263 140 79 0 chr13 16105776 16106154 -103638744 + L1PA16 LINE L1 5374 5781 -385 602 175 0 0 chr13 16106155 16106252 -103638646 + U13 snRNA snRNA 1 97 -7 1246 109 18 68 chr13 16106253 16106317 -103638581 + L1PA16 LINE L1 5769 5835 -331 2261 89 0 0 chr13 16106317 16106620 -103638278 + AluSc SINE Alu 2 304 -5 1246 109 18 68 chr13 16106620 16106775 -103638123 + L1PA16 LINE L1 5835 5977 -189 1067 89 0 7 chr13 16106877 16107023 -103637875 - AluSq/x SINE Alu -168 145 1 2012 119 3 3 chr13 16107024 16107318 -103637580 - AluSx SINE Alu -18 294 1 4721 171 29 102 chr13 16107332 16107568 -103637330 - L1MB3 LINE L1 -7 6176 5924 1640 180 35 96 chr13 16107568 16107640 -103637258 - MSTB1 LTR MaLR 0 432 357 2287 45 48 0 chr13 16107640 16107931 -103636967 + AluY SINE Alu 1 305 -6 1640 180 35 96 chr13 16107931 16108318 -103636580 - MSTB1 LTR MaLR -75 357 1 4721 171 29 102 chr13 16108318 16108752 -103636146 - L1MB3 LINE L1 -259 5924 5460 2190 108 0 0 chr13 16108752 16109048 -103635850 - AluSx SINE Alu -16 296 1 4721 171 29 102 chr13 16109048 16109213 -103635685 - L1MB3 LINE L1 -723 5460 5285 2156 98 30 0 chr13 16109213 16109508 -103635390 - AluSq SINE Alu -9 304 1 4721 171 29 102 chr13 16109508 16109993 -103634905 - L1MB3 LINE L1 -898 5285 4881 712 194 0 50 chr13 16109993 16110132 -103634766 + AluJo SINE Alu 5 136 -176 4721 171 29 102 chr13 16110132 16110440 -103634458 - L1MB3 LINE L1 -1302 4881 4552 2460 204 12 39 chr13 16110440 16110951 -103633947 + MLT2B2 LTR ERVL 1 497 -18 1391 205 32 63 chr13 16110952 16111126 -103633772 - L1MB3 LINE L1 -1583 4563 4385 2036 108 7 3 chr13 16111126 16111423 -103633475 - AluSx SINE Alu -14 298 1 1391 205 32 63 chr13 16111423 16111576 -103633322 - L1MB3 LINE L1 -1761 4385 4251 2161 105 7 0 chr13 16111576 16111882 -103633016 - AluSg SINE Alu -2 308 1 1391 205 32 63 chr13 16111882 16111996 -103632902 - L1MB3 LINE L1 -1895 4251 4135 569 152 0 10 chr13 16112037 16112136 -103632762 + AluSx SINE Alu 2 99 -213 1460 113 5 0 chr13 16112259 16112462 -103632436 + AluSx SINE Alu 87 290 -22 518 106 75 32 chr13 16112472 16112566 -103632332 + MER20 DNA MER1_type 49 146 -73 268 241 152 73 chr13 16112653 16112844 -103632054 - L2 LINE L2 -1131 2183 1978 1920 124 0 0 chr13 16112860 16113164 -103631734 - AluSx SINE Alu 0 304 1 2314 86 10 0 chr13 16113194 16113498 -103631400 - AluY SINE Alu -4 307 1 462 36 0 0 chr13 16113515 16113571 -103631327 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1854 115 0 0 chr13 16113592 16113853 -103631045 - AluSq SINE Alu -52 261 1 312 296 120 42 chr13 16113862 16114004 -103630894 - MIR SINE MIR -72 190 38 * 463 306 10 31 chr13 16113943 16114136 -103630762 - L2 LINE L2 -1340 1974 1786 2092 105 0 3 chr13 16114136 16114431 -103630467 - AluSx SINE Alu -18 294 1 2261 82 13 0 chr13 16114438 16114743 -103630155 - AluY SINE Alu -2 309 1 1049 75 0 0 chr13 16114744 16114877 -103630021 - AluSq/x SINE Alu -179 133 1 909 286 58 48 chr13 16114948 16115346 -103629552 - L2 LINE L2 -2739 575 174 2165 94 10 3 chr13 16115364 16115662 -103629236 + AluSq SINE Alu 1 300 -13 1703 127 8 4 chr13 16115800 16116068 -103628830 - AluSq SINE Alu -44 269 1 2265 204 87 15 chr13 16116068 16116607 -103628291 - L1ME1 LINE L1 -32 6134 5557 488 161 58 0 chr13 16116658 16116745 -103628153 + MER58B DNA MER1_type 250 341 0 2181 67 7 7 chr13 16117007 16117333 -103627565 + AluSg SINE Alu 1 326 0 626 126 11 0 chr13 16118796 16118891 -103626007 - AluJo SINE Alu -177 135 40 1243 96 138 0 chr13 16119220 16119408 -103625490 + AluSg/x SINE Alu 82 295 -15 1732 111 62 21 chr13 16119425 16119713 -103625185 - AluJo SINE Alu -12 300 1 6193 72 7 59 chr13 16119763 16121074 -103623824 - SVA Other Other -551 1384 433 2155 75 18 0 chr13 16121184 16121464 -103623434 + AluY SINE Alu 10 294 -17 364 243 33 92 chr13 16121464 16121510 -103623388 - L1ME2 LINE L1 -21 6143 6096 1457 191 38 17 chr13 16121510 16121803 -103623095 - AluJb SINE Alu -13 299 1 364 243 33 92 chr13 16121803 16121908 -103622990 - L1ME2 LINE L1 -68 6096 6001 2196 93 0 3 chr13 16121911 16122213 -103622685 - AluY SINE Alu -10 301 1 1166 172 14 28 chr13 16122383 16122598 -103622300 + MER2 DNA MER2_type 1 212 -133 2092 93 3 50 chr13 16122602 16122925 -103621973 - AluSg SINE Alu -2 308 1 691 197 0 29 chr13 16122951 16123088 -103621810 - AluJo SINE Alu -178 134 2 239 196 0 54 chr13 16123136 16123147 -103621751 + MER2 DNA MER2_type 268 278 -67 1913 139 0 16 chr13 16123147 16123464 -103621434 - AluSx SINE Alu 0 312 1 239 196 0 54 chr13 16123464 16123508 -103621390 + MER2 DNA MER2_type 278 320 -25 1492 163 25 18 chr13 16124029 16124306 -103620592 + AluJo SINE Alu 5 283 -29 1951 120 43 3 chr13 16124444 16124743 -103620155 + AluSx SINE Alu 1 311 -1 2000 122 10 0 chr13 16124797 16125101 -103619797 - AluSx SINE Alu -5 307 1 1683 103 84 7 chr13 16126079 16126352 -103618546 + AluSx SINE Alu 5 298 -14 1050 171 11 0 chr13 16126352 16126533 -103618365 + AluSg/x SINE Alu 106 288 -22 1902 130 3 3 chr13 16126543 16126851 -103618047 + AluSx SINE Alu 1 308 -4 527 125 0 0 chr13 16126908 16126980 -103617918 + FRAM SINE Alu 22 93 -83 34 24 0 0 chr13 16126990 16127031 -103617867 + AT_rich Low_complexity Low_complexity 1 41 0 1881 96 9 92 chr13 16127060 16127266 -103617632 - AluSx SINE Alu -5 307 138 1516 115 0 0 chr13 16127266 16127475 -103617423 - AluSx SINE Alu -103 209 1 1881 96 9 92 chr13 16127475 16127603 -103617295 - AluSx SINE Alu -174 138 1 2583 196 100 70 chr13 16127604 16128216 -103616682 - L1ME2 LINE L1 -57 6107 5515 1871 97 45 39 chr13 16128216 16128419 -103616479 - AluSp SINE Alu -2 311 104 2327 49 7 0 chr13 16128419 16128707 -103616191 - AluY SINE Alu -21 290 1 1871 97 45 39 chr13 16128707 16128812 -103616086 - AluSp SINE Alu -209 104 1 1626 174 3 16 chr13 16128821 16129126 -103615772 - AluSx SINE Alu -9 303 3 2583 196 100 70 chr13 16129126 16129310 -103615588 - L1ME2 LINE L1 -656 5508 5331 2316 72 3 7 chr13 16129310 16129615 -103615283 - AluY SINE Alu -7 304 1 2583 196 100 70 chr13 16129615 16129721 -103615177 - L1ME2 LINE L1 -833 5331 5230 1637 165 0 38 chr13 16129721 16130037 -103614861 - AluJo SINE Alu 0 312 9 2583 196 100 70 chr13 16130037 16130318 -103614580 - L1ME2 LINE L1 -934 5230 4882 330 270 92 0 chr13 16130342 16130494 -103614404 - L1ME2 LINE L1 -1330 4816 4651 31 0 0 0 chr13 16130790 16130821 -103614077 + AT_rich Low_complexity Low_complexity 1 31 0 341 104 0 0 chr13 16130821 16130869 -103614029 - AluSq/x SINE Alu -170 133 86 901 177 9 64 chr13 16130869 16131089 -103613809 - AluJo SINE Alu -92 220 13 859 218 0 0 chr13 16131101 16131275 -103613623 - AluJb SINE Alu -5 307 134 1304 198 70 4 chr13 16131297 16131570 -103613328 - AluJb SINE Alu -21 291 1 255 31 0 0 chr13 16131575 16131607 -103613291 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1827 148 0 0 chr13 16131607 16131890 -103613008 - AluSx SINE Alu -29 283 1 674 218 46 25 chr13 16132269 16132355 -103612543 + Looper DNA T2_type 65 148 -1410 736 168 64 0 chr13 16132355 16132480 -103612418 + FLAM_A SINE Alu 1 133 0 674 218 46 25 chr13 16132480 16132614 -103612284 + Looper DNA T2_type 148 293 -1265 198 0 0 0 chr13 16132614 16132636 -103612262 + (TAA)n Simple_repeat Simple_repeat 1 22 0 674 218 46 25 chr13 16132636 16132653 -103612245 + Looper DNA T2_type 293 308 -1250 1201 152 5 0 chr13 16132653 16132844 -103612054 - AluSg/x SINE Alu -25 287 96 387 205 37 81 chr13 16132855 16133016 -103611882 + Looper DNA T2_type 284 437 -1121 1222 165 0 19 chr13 16133029 16133241 -103611657 + AluJb SINE Alu 87 294 -18 889 179 25 6 chr13 16133279 16133441 -103611457 - FRAM SINE Alu -1 165 1 1692 158 10 17 chr13 16133965 16134262 -103610636 - AluSx SINE Alu -17 295 1 342 237 118 77 chr13 16134274 16134443 -103610455 - MIR SINE MIR -13 249 74 883 194 0 0 chr13 16134663 16134823 -103610075 + AluJb SINE Alu 139 298 -14 1929 111 35 3 chr13 16134863 16135151 -103609747 - AluSq SINE Alu -16 297 1 2046 106 0 14 chr13 16135412 16135705 -103609193 - AluSg SINE Alu -21 289 1 1205 189 62 38 chr13 16136815 16136974 -103607924 - AluJo SINE Alu -9 303 132 2320 80 0 3 chr13 16136974 16137274 -103607624 - AluSg SINE Alu -11 299 1 1205 189 62 38 chr13 16137274 16137405 -103607493 - AluJo SINE Alu -180 132 6 2000 125 0 0 chr13 16137437 16137726 -103607172 - AluSx SINE Alu -14 298 10 1907 131 0 3 chr13 16138104 16138394 -103606504 - AluSx SINE Alu -15 297 9 1109 154 0 10 chr13 16138801 16138996 -103605902 - AluSg/x SINE Alu 0 310 118 2204 92 0 10 chr13 16139126 16139430 -103605468 - AluSx SINE Alu -11 301 1 2402 55 3 0 chr13 16139656 16139948 -103604950 - AluY SINE Alu -18 293 1 1668 105 158 0 chr13 16140196 16140462 -103604436 - MER51B LTR ERV1 -69 308 1 1599 135 0 4 chr13 16140474 16140703 -103604195 - MER51B-int LTR ERV1 -11 7805 7578 1046 98 0 46 chr13 16140704 16140825 -103604073 - MER51B-int LTR ERV1 -1565 6251 6139 2124 95 7 7 chr13 16140825 16141131 -103603767 - AluY SINE Alu -4 307 2 1046 98 0 46 chr13 16141131 16141183 -103603715 - MER51B-int LTR ERV1 -1677 6139 6086 2045 98 21 3 chr13 16141185 16141471 -103603427 + AluSg SINE Alu 1 291 -19 463 127 0 0 chr13 16141479 16141550 -103603348 - MER51B-int LTR ERV1 -4616 3200 3130 266 86 0 0 chr13 16141542 16141577 -103603321 - MER51B-int LTR ERV1 -7781 35 1 * 959 99 106 7 chr13 16141577 16141728 -103603170 - MER51B LTR ERV1 0 377 212 2024 113 7 3 chr13 16141734 16142025 -103602873 - AluSx SINE Alu -20 292 1 502 278 40 30 chr13 16142096 16142340 -103602558 - L2 LINE L2 -1011 2303 1988 2122 114 7 0 chr13 16142374 16142672 -103602226 - AluSq SINE Alu -13 300 1 1713 175 0 9 chr13 16142714 16143029 -103601869 - AluJb SINE Alu 0 312 1 2268 52 45 0 chr13 16143240 16143526 -103601372 + AluSx SINE Alu 1 299 -13 2178 106 6 3 chr13 16143594 16143906 -103600992 + AluSq SINE Alu 1 313 0 23 0 0 0 chr13 16143996 16144019 -103600879 + AT_rich Low_complexity Low_complexity 1 23 0 1236 170 48 65 chr13 16144450 16144676 -103600222 + AluJb SINE Alu 1 222 -90 2069 112 7 7 chr13 16144676 16144979 -103599919 - AluSq SINE Alu -10 303 1 1236 170 48 65 chr13 16144979 16145046 -103599852 + AluJb SINE Alu 222 289 -23 1863 140 0 7 chr13 16145094 16145416 -103599482 + AluSg SINE Alu 1 310 0 410 258 11 0 chr13 16145425 16145514 -103599384 + AluJ/FLAM SINE Alu 1 90 -212 205 252 102 88 chr13 16145616 16145763 -103599135 - L2 LINE L2 -1 3312 3164 2216 85 0 3 chr13 16145910 16146204 -103598694 - AluY SINE Alu -18 293 1 181 333 62 21 chr13 16146267 16146363 -103598535 + MIR SINE MIR 12 111 -151 2166 88 10 0 chr13 16146914 16147208 -103597690 + AluSp SINE Alu 4 300 -13 1182 126 0 11 chr13 16147519 16147710 -103597188 - AluSg/x SINE Alu -1 311 123 1084 101 42 18 chr13 16148180 16148348 -103596550 + AluSq SINE Alu 133 304 -9 1863 132 0 39 chr13 16148436 16148609 -103596289 - AluSx SINE Alu -13 299 142 1948 124 0 20 chr13 16148609 16148915 -103595983 - AluSx SINE Alu -12 300 1 1863 132 0 39 chr13 16148915 16149052 -103595846 - AluSx SINE Alu -170 142 1 210 333 20 50 chr13 16149077 16149176 -103595722 - MER5A DNA MER1_type 0 189 94 181 322 138 0 chr13 16149326 16149413 -103595485 - L2 LINE L2 0 3272 3174 1949 139 6 19 chr13 16149732 16150048 -103594850 - AluSx SINE Alu 0 312 1 1690 183 7 3 chr13 16150349 16150639 -103594259 + AluJo SINE Alu 1 291 -21 232 249 97 48 chr13 16150688 16150853 -103594045 - L1MC/D LINE L1 -1973 5835 5663 2211 91 7 0 chr13 16150854 16151152 -103593746 - AluSp SINE Alu -13 300 1 1704 127 90 0 chr13 16151270 16151537 -103593361 - AluSx SINE Alu -21 291 1 1959 120 0 13 chr13 16151545 16151844 -103593054 - AluSg SINE Alu -1 309 15 986 86 0 0 chr13 16151846 16151985 -103592913 + AluSc SINE Alu 171 309 0 1681 87 0 4 chr13 16152130 16152360 -103592538 + AluY SINE Alu 70 298 -13 1674 131 8 4 chr13 16152660 16152920 -103591978 - AluSx SINE Alu -27 285 25 2361 101 0 0 chr13 16153117 16153424 -103591474 + AluSg SINE Alu 1 307 -3 800 191 0 7 chr13 16153698 16153845 -103591053 + FRAM SINE Alu 20 165 -11 2268 81 0 0 chr13 16153858 16154142 -103590756 - AluSp SINE Alu -17 296 13 24 32 0 0 chr13 16154764 16154795 -103590103 + AT_rich Low_complexity Low_complexity 1 31 0 1909 155 7 0 chr13 16155226 16155523 -103589375 - AluSx SINE Alu -13 299 1 865 114 16 0 chr13 16155523 16155646 -103589252 - AluJb SINE Alu -175 137 13 379 120 160 27 chr13 16155703 16155801 -103589097 - AluS SINE Alu -242 57 1 2021 136 0 0 chr13 16155843 16156130 -103588768 - AluSx SINE Alu -25 287 1 2227 105 3 0 chr13 16156806 16157101 -103587797 + AluSx SINE Alu 1 296 -16 2520 44 3 0 chr13 16157621 16157918 -103586980 - AluSp SINE Alu -15 298 1 608 250 81 17 chr13 16157926 16158098 -103586800 + MER5A DNA MER1_type 7 189 0 22 0 0 0 chr13 16158098 16158120 -103586778 + AT_rich Low_complexity Low_complexity 1 22 0 2054 107 17 10 chr13 16158214 16158514 -103586384 - AluSq SINE Alu -11 302 1 858 181 100 35 chr13 16158654 16158914 -103585984 + L1MC4a LINE L1 6161 6437 -1371 1044 177 45 36 chr13 16158940 16159053 -103585845 - MER2 DNA MER2_type -4 341 231 2431 70 3 0 chr13 16159053 16159354 -103585544 - AluY SINE Alu -9 302 1 1044 177 45 36 chr13 16159354 16159460 -103585438 - MER2 DNA MER2_type -114 231 120 * 1111 161 92 9 chr13 16159458 16159676 -103585222 - MER2 DNA MER2_type -109 236 1 429 180 170 160 chr13 16159676 16159890 -103585008 + L1MC4 LINE L1 6479 6698 -1344 1604 173 14 32 chr13 16159890 16160174 -103584724 - AluJo SINE Alu -30 282 4 429 180 170 160 chr13 16160174 16160259 -103584639 + L1MC4 LINE L1 6698 6781 -1261 2188 189 78 69 chr13 16160260 16160725 -103584173 + L1MC4a LINE L1 7107 7566 -242 2191 110 0 0 chr13 16160725 16161007 -103583891 + 7SLRNA srpRNA srpRNA 20 301 -19 221 83 28 0 chr13 16161007 16161043 -103583855 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2188 189 78 69 chr13 16161043 16161216 -103583682 + L1MC4a LINE L1 7565 7752 -56 2446 81 0 0 chr13 16161269 16161578 -103583320 - AluY SINE Alu -2 309 1 1183 251 17 14 chr13 16161850 16162137 -103582761 + AluJo SINE Alu 1 288 -14 250 161 280 0 chr13 16162289 16162382 -103582516 - Charlie1 DNA MER1_type -6 2755 2637 1330 205 3 53 chr13 16162384 16162439 -103582459 + AluJo SINE Alu 1 57 -255 2056 132 3 3 chr13 16162439 16162734 -103582164 + AluSx SINE Alu 1 295 -17 1330 205 3 53 chr13 16162734 16162981 -103581917 + AluJo SINE Alu 57 288 -24 1761 129 0 50 chr13 16162991 16163270 -103581628 + AluSx SINE Alu 3 267 -45 2342 56 7 0 chr13 16163323 16163610 -103581288 + AluY SINE Alu 3 291 -20 2114 120 3 0 chr13 16164110 16164411 -103580487 - AluSq SINE Alu -11 302 1 1139 114 0 13 chr13 16164423 16164612 -103580286 - AluSg/x SINE Alu 0 310 132 2220 117 0 0 chr13 16164612 16164921 -103579977 - AluSx SINE Alu -3 309 1 207 354 12 12 chr13 16164939 16165021 -103579877 - L2 LINE L2 -6 3266 3185 981 194 67 121 chr13 16165472 16165653 -103579245 - AluJb SINE Alu -4 298 140 2147 129 0 7 chr13 16165653 16165962 -103578936 - AluSx SINE Alu -5 307 1 981 194 67 121 chr13 16165962 16166095 -103578803 - AluJb SINE Alu -162 140 1 344 348 106 18 chr13 16166126 16166399 -103578499 - L1MC4a LINE L1 -1907 5901 5605 2241 113 3 0 chr13 16166484 16166795 -103578103 - AluSx SINE Alu 0 312 1 637 246 64 6 chr13 16166828 16166999 -103577899 + MER46C DNA MER2_type 69 249 -89 693 181 88 113 chr13 16167568 16167726 -103577172 - MER46A DNA MER2_type -2499 232 79 1636 160 14 18 chr13 16167726 16168032 -103576866 + AluJb SINE Alu 1 305 0 693 181 88 113 chr13 16168032 16168110 -103576788 - MER46A DNA MER2_type -2652 79 1 1959 130 43 0 chr13 16168466 16168765 -103576133 - AluSx SINE Alu 0 312 1 337 199 121 28 chr13 16169574 16169715 -103575183 - L1MC5 LINE L1 -118 7843 7690 2340 101 0 0 chr13 16169890 16170186 -103574712 - AluSx SINE Alu -16 296 1 27 49 0 0 chr13 16170523 16170564 -103574334 + AT_rich Low_complexity Low_complexity 1 41 0 423 0 0 0 chr13 16170954 16171001 -103573897 + (TG)n Simple_repeat Simple_repeat 2 48 0 2335 113 0 0 chr13 16172020 16172329 -103572569 - AluSq SINE Alu -4 309 1 615 183 122 0 chr13 16172702 16172817 -103572081 - FLAM_A SINE Alu -4 129 1 276 318 81 52 chr13 16172966 16173139 -103571759 - MER5B DNA MER1_type 0 178 1 982 187 43 66 chr13 16173283 16173540 -103571358 - AluJo SINE Alu -39 273 23 446 178 28 161 chr13 16173757 16173805 -103571093 + MER58B DNA MER1_type 186 239 -2181 206 32 32 0 chr13 16173805 16173836 -103571062 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 446 178 28 161 chr13 16173836 16173967 -103570931 + MER58B DNA MER1_type 239 341 0 2080 104 0 48 chr13 16174250 16174413 -103570485 - AluSg SINE Alu -16 294 151 2286 90 3 7 chr13 16174413 16174723 -103570175 - AluSc SINE Alu 0 309 1 2080 104 0 48 chr13 16174723 16174868 -103570030 - AluSg SINE Alu -159 151 1 26 0 0 0 chr13 16176297 16176323 -103568575 + AT_rich Low_complexity Low_complexity 1 26 0 2090 117 0 4 chr13 16176332 16176613 -103568285 - AluSx SINE Alu -32 280 1 2224 119 0 0 chr13 16176619 16176929 -103567969 - AluSq SINE Alu -3 310 1 1673 162 14 24 chr13 16176934 16177224 -103567674 - AluJo SINE Alu -23 289 3 25 31 0 0 chr13 16178133 16178165 -103566733 + AT_rich Low_complexity Low_complexity 1 32 0 684 160 0 17 chr13 16179463 16179582 -103565316 + FLAM_A SINE Alu 5 121 -12 586 157 19 9 chr13 16179974 16180082 -103564816 + FLAM_A SINE Alu 1 109 -33 22 0 0 0 chr13 16180088 16180110 -103564788 + AT_rich Low_complexity Low_complexity 1 22 0 4460 176 40 5 chr13 16180162 16181033 -103563865 - L1MC1 LINE L1 -17 6316 5415 689 257 7 0 chr13 16181392 16181544 -103563354 - FRAM SINE Alu -23 153 1 1908 130 10 30 chr13 16181554 16181713 -103563185 - AluSx SINE Alu -18 294 142 2105 125 3 3 chr13 16181713 16182018 -103562880 - AluSx SINE Alu -7 305 1 1908 130 10 30 chr13 16182018 16182158 -103562740 - AluSx SINE Alu -170 142 1 248 146 0 0 chr13 16182362 16182410 -103562488 - Alu SINE Alu 0 299 252 861 121 0 0 chr13 16182410 16182534 -103562364 - AluSq/x SINE Alu -189 124 1 1163 150 0 5 chr13 16183208 16183395 -103561503 - MER46B DNA MER2_type -3 233 48 2286 70 0 3 chr13 16183399 16183685 -103561213 - AluY SINE Alu -1 310 26 678 203 16 0 chr13 16183704 16183827 -103561071 - FLAM_C SINE Alu -7 126 2 857 161 27 0 chr13 16183831 16183980 -103560918 - MER46B DNA MER2_type -183 53 26 300 206 99 84 chr13 16184191 16184322 -103560576 - Charlie1a DNA MER1_type -6 1449 1317 901 264 179 11 chr13 16184393 16184647 -103560251 - Charlie1a DNA MER1_type -1547 1214 1004 1802 178 16 0 chr13 16184647 16184950 -103559948 + AluJb SINE Alu 1 308 -4 901 264 179 11 chr13 16184950 16185131 -103559767 - Charlie1a DNA MER1_type -1757 1004 706 * 1179 272 80 56 chr13 16185125 16185665 -103559233 - Charlie1a DNA MER1_type -902 553 1 186 43 0 0 chr13 16185873 16185896 -103559002 + (T)n Simple_repeat Simple_repeat 1 23 0 547 211 18 0 chr13 16186000 16186109 -103558789 + MIR SINE MIR 64 174 -88 1997 119 0 45 chr13 16187584 16187776 -103557122 - AluSq SINE Alu -17 296 122 2435 80 0 6 chr13 16187776 16188087 -103556811 - AluY SINE Alu -2 309 1 1997 119 0 45 chr13 16188087 16188204 -103556694 - AluSq SINE Alu -191 122 1 1738 168 7 10 chr13 16188301 16188599 -103556299 + AluJo SINE Alu 1 297 -15 21 71 0 0 chr13 16189559 16189601 -103555297 + AT_rich Low_complexity Low_complexity 1 42 0 1750 169 17 3 chr13 16190262 16190558 -103554340 - AluJo SINE Alu -9 303 4 23 0 0 0 chr13 16190992 16191015 -103553883 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 16192080 16192108 -103552790 + AT_rich Low_complexity Low_complexity 1 28 0 2279 85 3 7 chr13 16193934 16194229 -103550669 - AluSg SINE Alu -16 294 1 22 35 0 0 chr13 16194582 16194611 -103550287 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 16194694 16194721 -103550177 + AT_rich Low_complexity Low_complexity 1 27 0 308 268 36 18 chr13 16194917 16195029 -103549869 - MER104 DNA Tc2 -56 124 11 23 78 0 0 chr13 16198660 16198711 -103546187 + AT_rich Low_complexity Low_complexity 1 51 0 230 311 14 0 chr13 16199728 16199802 -103545096 - L1MC4 LINE L1 -152 7890 7816 338 169 15 15 chr13 16200173 16200238 -103544660 + AluJo SINE Alu 71 135 -167 180 77 0 0 chr13 16201119 16201145 -103543753 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 236 279 23 35 chr13 16201977 16202063 -103542835 - L2 LINE L2 0 3313 3229 757 220 57 17 chr13 16202113 16202290 -103542608 - MER5A DNA MER1_type -1 188 5 351 65 0 0 chr13 16202908 16202954 -103541944 + (TG)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chr13 16203987 16204009 -103540889 + AT_rich Low_complexity Low_complexity 1 22 0 302 241 11 0 chr13 16204697 16204784 -103540114 + Charlie5 DNA MER1_type 26 113 -2499 * 1188 184 136 9 chr13 16204775 16205106 -103539792 + Charlie5 DNA MER1_type 2243 2615 0 231 167 0 0 chr13 16205248 16205290 -103539608 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2715 39 0 0 chr13 16205292 16205600 -103539298 - AluY SINE Alu -3 308 1 23 0 0 0 chr13 16205884 16205907 -103538991 + AT_rich Low_complexity Low_complexity 1 23 0 397 284 89 78 chr13 16206916 16207033 -103537865 + L2 LINE L2 2593 2707 -607 1750 146 39 0 chr13 16207033 16207313 -103537585 + AluSx SINE Alu 5 295 -17 397 284 89 78 chr13 16207313 16207477 -103537421 + L2 LINE L2 2707 2877 -437 1922 142 3 3 chr13 16207518 16207806 -103537092 - AluSx SINE Alu -24 288 1 1547 149 54 58 chr13 16207907 16208202 -103536696 - AluJo SINE Alu -17 295 2 321 260 154 0 chr13 16208368 16208491 -103536407 - L2 LINE L2 -1 3312 3171 24 0 0 0 chr13 16212211 16212235 -103532663 + AT_rich Low_complexity Low_complexity 1 24 0 2168 101 3 17 chr13 16212235 16212523 -103532375 - AluSx SINE Alu -24 288 5 444 236 61 61 chr13 16212971 16213200 -103531698 - MER106A DNA MER1_type -5 231 3 436 279 91 20 chr13 16213219 16213416 -103531482 - L2 LINE L2 -519 2795 2585 21 0 0 0 chr13 16215692 16215713 -103529185 + AT_rich Low_complexity Low_complexity 1 21 0 1376 220 54 113 chr13 16215912 16216344 -103528554 - L1ME2 LINE L1 -150 6014 5656 1857 154 0 20 chr13 16216344 16216650 -103528248 - AluJo SINE Alu 0 312 13 1376 220 54 113 chr13 16216650 16216939 -103527959 - L1ME2 LINE L1 -508 5656 5352 22 35 0 0 chr13 16217260 16217289 -103527609 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr13 16218023 16218058 -103526840 + AT_rich Low_complexity Low_complexity 1 35 0 1873 167 10 0 chr13 16218207 16218506 -103526392 - AluJo SINE Alu -10 302 1 21 23 0 47 chr13 16219108 16219127 -103525771 + AT_rich Low_complexity Low_complexity 1 19 -22 2068 146 0 0 chr13 16219127 16219429 -103525469 + AluSx SINE Alu 1 302 -10 21 23 0 47 chr13 16219429 16219452 -103525446 + AT_rich Low_complexity Low_complexity 19 41 0 1311 214 85 25 chr13 16219665 16219923 -103524975 + MER2 DNA MER2_type 1 283 -62 1893 170 0 3 chr13 16219923 16220229 -103524669 - AluJb SINE Alu -7 305 1 1311 214 85 25 chr13 16220229 16220287 -103524611 + MER2 DNA MER2_type 283 336 -9 23 0 0 0 chr13 16220326 16220349 -103524549 + AT_rich Low_complexity Low_complexity 1 23 0 1791 180 10 0 chr13 16220388 16220683 -103524215 + AluJb SINE Alu 1 298 -14 259 289 82 30 chr13 16220895 16221030 -103523868 - Charlie7 DNA MER1_type -1 2611 2470 2556 50 3 0 chr13 16222191 16222489 -103522409 - AluY SINE Alu -12 299 1 201 273 40 71 chr13 16222744 16222843 -103522055 + MER5A DNA MER1_type 17 112 -77 400 224 131 3 chr13 16223047 16223169 -103521729 + MER5A DNA MER1_type 4 131 -47 1135 191 179 0 chr13 16226373 16226624 -103518274 - AluSx SINE Alu -16 296 1 192 77 0 0 chr13 16226917 16226943 -103517955 + (T)n Simple_repeat Simple_repeat 1 26 0 2275 92 3 0 chr13 16226999 16227293 -103517605 + AluSp SINE Alu 2 296 -17 1734 124 4 12 chr13 16228363 16228621 -103516277 + AluJb SINE Alu 42 297 -15 2125 118 10 3 chr13 16229632 16229928 -103514970 + AluSx SINE Alu 1 298 -14 868 163 7 0 chr13 16230098 16230245 -103514653 + AluSg/x SINE Alu 139 286 -26 409 269 50 50 chr13 16231227 16231368 -103513530 + L2 LINE L2 3169 3309 -4 263 196 0 0 chr13 16231385 16231431 -103513467 - MER81 DNA DNA -68 46 1 2173 209 83 6 chr13 16231700 16232232 -103512666 + L1MC1 LINE L1 5760 6332 -1 2233 96 0 0 chr13 16232280 16232562 -103512336 - AluSx SINE Alu -30 282 1 319 300 110 10 chr13 16233592 16233692 -103511206 + MIR SINE MIR 40 149 -113 1149 163 39 0 chr13 16235229 16235432 -103509466 + AluJb SINE Alu 64 274 -38 201 359 57 19 chr13 16236099 16236258 -103508640 + L2 LINE L2 3080 3244 -28 1625 161 73 4 chr13 16236902 16237175 -103507723 + AluJo SINE Alu 1 292 -20 2325 55 24 17 chr13 16237203 16237496 -103507402 + AluY SINE Alu 1 295 -16 751 224 6 6 chr13 16237968 16238124 -103506774 + Tigger1 DNA MER2_type 2 157 -2261 * 1045 124 129 16 chr13 16238113 16238307 -103506591 + Tigger1 DNA MER2_type 2202 2417 -1 777 144 30 23 chr13 16238331 16238463 -103506435 - FLAM_A SINE Alu 0 133 1 280 290 99 38 chr13 16238570 16238942 -103505956 + L1M4 LINE L1 4222 4616 -1530 2472 51 3 26 chr13 16239174 16239486 -103505412 + AluY SINE Alu 1 305 -6 1932 158 0 3 chr13 16239763 16240060 -103504838 - AluJb SINE Alu -16 296 1 344 283 147 28 chr13 16241425 16241602 -103503296 - MIR SINE MIR -56 206 9 975 105 7 7 chr13 16241855 16241998 -103502900 - AluSg/x SINE Alu -10 299 157 1112 99 0 7 chr13 16242064 16242206 -103502692 - AluSq/x SINE Alu -170 143 3 2237 102 27 0 chr13 16242299 16242594 -103502304 - AluSx SINE Alu -9 303 1 2298 100 0 3 chr13 16242663 16242964 -103501934 - AluSx SINE Alu -12 300 1 300 195 53 62 chr13 16243011 16243124 -103501774 - L1M4 LINE L1 -1806 4340 4229 993 168 12 6 chr13 16243141 16243308 -103501590 - FRAM SINE Alu -7 169 2 189 0 0 0 chr13 16243308 16243329 -103501569 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1610 142 67 8 chr13 16243338 16243605 -103501293 - AluSq SINE Alu -28 285 3 499 208 47 0 chr13 16243628 16243757 -103501141 - L1M4 LINE L1 -1958 4188 4054 820 139 16 0 chr13 16243758 16243887 -103501011 + AluJb SINE Alu 1 131 -181 234 0 0 0 chr13 16243943 16243969 -103500929 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1622 189 28 0 chr13 16243969 16244248 -103500650 - AluJo SINE Alu -25 287 1 358 268 77 72 chr13 16244333 16244476 -103500422 - L1M4 LINE L1 -2311 3835 3689 2214 114 3 0 chr13 16244476 16244775 -103500123 - AluSp SINE Alu -13 300 1 358 268 77 72 chr13 16244775 16244866 -103500032 - L1M4 LINE L1 -2457 3689 3600 2089 91 21 14 chr13 16244959 16245245 -103499653 - L1PA7 LINE L1 -2 6152 5865 12541 100 20 31 chr13 16245245 16247309 -103497589 - L1P3 LINE L1 -4369 2092 5 2123 114 0 13 chr13 16247325 16247624 -103497274 - AluSg SINE Alu -15 295 1 976 191 12 18 chr13 16247724 16247892 -103497006 - FAM SINE Alu -8 167 1 1961 135 24 3 chr13 16247895 16248191 -103496707 - AluSx SINE Alu -10 302 1 316 253 41 68 chr13 16248450 16248596 -103496302 - L1MEd LINE L1 -5958 161 20 36 0 0 0 chr13 16250820 16250856 -103494042 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr13 16251260 16251296 -103493602 + AT_rich Low_complexity Low_complexity 1 36 0 355 298 18 30 chr13 16251477 16251645 -103493253 - L1ME LINE L1 -376 5745 5580 22 0 0 0 chr13 16251694 16251716 -103493182 + AT_rich Low_complexity Low_complexity 1 22 0 244 342 0 0 chr13 16252600 16252720 -103492178 + T-rich Low_complexity Low_complexity 1 120 0 1963 96 92 0 chr13 16253680 16253952 -103490946 - AluSg SINE Alu -13 297 1 24 0 0 0 chr13 16254455 16254479 -103490419 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 132 53 chr13 16254544 16254787 -103490111 + HAL1b LINE L1 340 601 -747 190 94 62 0 chr13 16254833 16254865 -103490033 - MER5A DNA MER1_type -148 41 8 629 247 136 49 chr13 16255188 16255557 -103489341 + L1MC4a LINE L1 6120 6520 -1288 231 308 100 8 chr13 16255613 16255733 -103489165 + L1MC4 LINE L1 6870 7000 -1042 1601 180 6 29 chr13 16255892 16256208 -103488690 + AluJo SINE Alu 1 309 -3 1108 237 58 13 chr13 16256842 16257154 -103487744 - MER63C DNA MER1_type -552 378 53 2037 134 10 3 chr13 16257507 16257646 -103487252 + AluSx SINE Alu 1 138 -174 2360 95 0 16 chr13 16257646 16257961 -103486937 + AluSq SINE Alu 1 310 -3 2037 134 10 3 chr13 16257961 16258120 -103486778 + AluSx SINE Alu 138 301 -11 849 228 0 6 chr13 16258120 16258300 -103486598 + AluJb SINE Alu 134 312 0 770 189 0 0 chr13 16258772 16258899 -103485999 + FLAM_A SINE Alu 1 127 -6 262 236 112 0 chr13 16258908 16258997 -103485901 - L1ME LINE L1 -518 5603 5505 461 184 146 0 chr13 16258997 16259100 -103485798 + MER58 DNA MER1_type 1 118 -223 723 239 52 14 chr13 16259102 16259315 -103485583 - MIR SINE MIR -11 251 31 1938 142 33 3 chr13 16259316 16259619 -103485279 - AluSx SINE Alu 0 312 1 845 220 163 72 chr13 16259675 16259833 -103485065 + LTR38 LTR ERV1 1 143 -413 2355 104 0 0 chr13 16259833 16260130 -103484768 + AluSg SINE Alu 1 297 -13 845 220 163 72 chr13 16260130 16260334 -103484564 + LTR38 LTR ERV1 143 396 -160 2007 78 0 0 chr13 16260342 16260586 -103484312 - AluSx SINE Alu -13 299 56 2318 76 14 3 chr13 16260820 16261109 -103483789 - AluSc SINE Alu -17 292 1 2476 68 0 0 chr13 16261327 16261622 -103483276 - AluY SINE Alu -16 295 1 477 49 0 0 chr13 16261817 16261878 -103483020 + AluY SINE Alu 1 61 -257 338 172 180 16 chr13 16261991 16262119 -103482779 + L1MC4 LINE L1 7877 8025 -17 366 265 10 29 chr13 16262317 16262419 -103482479 - L2 LINE L2 0 3313 3214 24 32 0 0 chr13 16262634 16262665 -103482233 + AT_rich Low_complexity Low_complexity 1 31 0 1724 160 27 7 chr13 16262665 16262958 -103481940 + AluJb SINE Alu 1 299 -13 2110 98 52 33 chr13 16263294 16263662 -103481236 - THE1C LTR MaLR 0 375 1 2246 71 3 30 chr13 16263906 16264202 -103480696 - AluSg SINE Alu -22 288 1 216 345 0 0 chr13 16264207 16264265 -103480633 - L2 LINE L2 -14 3258 3201 210 277 77 0 chr13 16264451 16264516 -103480382 + L2 LINE L2 3241 3310 -3 234 150 163 25 chr13 16266898 16266978 -103477920 + L1MC4 LINE L1 7002 7172 -716 231 213 33 16 chr13 16267252 16267313 -103477585 + L1MC4 LINE L1 7498 7559 -483 1745 168 0 3 chr13 16267503 16267794 -103477104 + AluJb SINE Alu 1 290 -22 1154 150 102 88 chr13 16267827 16268101 -103476797 + AluJb SINE Alu 2 279 -33 794 100 9 0 chr13 16268101 16268211 -103476687 - THE1C LTR MaLR -3 372 262 4077 64 0 15 chr13 16268211 16268730 -103476168 - MER9 LTR ERVK 0 511 1 8008 85 19 10 chr13 16268730 16270134 -103474764 - HERVK9 LTR ERVK 0 8032 4582 1855 48 13 0 chr13 16270133 16270361 -103474537 - HERVK9 LTR ERVK -1975 3941 3711 * 14094 56 1 0 chr13 16270361 16272034 -103472864 - HERVK9 LTR ERVK -3130 2786 1113 4393 79 2 7 chr13 16272035 16272606 -103472292 - HERVK9 LTR ERVK -5348 568 1 3883 88 0 6 chr13 16272606 16273120 -103471778 - MER9 LTR ERVK 0 511 1 1429 119 40 36 chr13 16273120 16273371 -103471527 - THE1C LTR MaLR -109 266 15 688 254 69 0 chr13 16273380 16273553 -103471345 + AluJo SINE Alu 98 282 -30 223 159 0 32 chr13 16273596 16273659 -103471239 + (TA)n Simple_repeat Simple_repeat 1 61 0 1773 160 50 0 chr13 16273759 16274040 -103470858 - AluJo SINE Alu -17 295 1 2251 151 81 2 chr13 16274245 16274642 -103470256 + MSTC LTR MaLR 1 428 0 1652 147 4 4 chr13 16274678 16274937 -103469961 + MER2 DNA MER2_type 7 265 -80 1887 202 129 28 chr13 16275099 16275174 -103469724 - REP3 LTR ERV 0 562 496 1780 130 68 17 chr13 16275174 16275467 -103469431 - AluSx SINE Alu -4 308 1 1887 202 129 28 chr13 16275467 16275901 -103468997 - REP3 LTR ERV -66 496 1 607 285 39 81 chr13 16275904 16276045 -103468853 - L1M4 LINE L1 -2678 3468 3323 1763 147 67 7 chr13 16276045 16276330 -103468568 - AluJo SINE Alu -10 302 1 607 285 39 81 chr13 16276330 16276410 -103468488 - L1M4 LINE L1 -2823 3323 3241 2165 115 10 3 chr13 16276410 16276715 -103468183 - AluSx SINE Alu -5 307 1 607 285 39 81 chr13 16276715 16276899 -103467999 - L1M4 LINE L1 -2905 3241 3079 1881 165 3 7 chr13 16277294 16277597 -103467301 - AluJb SINE Alu -10 302 1 361 273 9 0 chr13 16277857 16277967 -103466931 - HAL1 LINE L1 -700 1807 1697 296 197 0 61 chr13 16277972 16278038 -103466860 - MER20 DNA MER1_type -3 216 155 386 326 60 62 chr13 16278038 16278251 -103466647 - L2 LINE L2 -481 2833 2621 1589 189 0 29 chr13 16278251 16278557 -103466341 + AluJo SINE Alu 3 299 -13 2564 63 0 0 chr13 16278563 16278865 -103466033 - AluY SINE Alu -9 302 1 386 326 60 62 chr13 16278865 16279131 -103465767 - L2 LINE L2 -698 2616 2348 2311 106 0 3 chr13 16279131 16279434 -103465464 + AluSx SINE Alu 1 302 -10 427 253 71 22 chr13 16279475 16279657 -103465241 + L1MB2 LINE L1 -723 4294966763 -6839 1453 167 38 88 chr13 16279700 16280065 -103464833 - MER31B LTR ERV1 -119 347 1 2093 239 65 32 chr13 16280425 16281025 -103463873 + L1MB2 LINE L1 801 1638 -4675 2210 144 33 22 chr13 16281025 16281385 -103463513 - THE1B LTR MaLR 0 364 1 2093 239 65 32 chr13 16281385 16281551 -103463347 + L1MB2 LINE L1 1638 1797 -4516 43874 51 6 5 chr13 16281551 16287895 -103457003 + L1PA5 LINE L1 2 6291 0 4126 199 19 59 chr13 16287886 16287900 -103456998 + L1MB2 LINE L1 4638 4651 -1756 * 1851 126 25 14 chr13 16287900 16288216 -103456682 + AluSx SINE Alu 1 319 0 4126 199 19 59 chr13 16288216 16288799 -103456099 + L1MB2 LINE L1 4651 5256 -1151 2065 97 0 91 chr13 16288799 16289119 -103455779 + AluSx SINE Alu 1 291 -21 4126 199 19 59 chr13 16289119 16289150 -103455748 + L1MB2 LINE L1 5256 5287 -1120 2238 102 3 0 chr13 16289150 16289443 -103455455 + AluSp SINE Alu 1 294 -19 4126 199 19 59 chr13 16289443 16290117 -103454781 + L1MB2 LINE L1 5287 5987 -420 2101 103 24 14 chr13 16290117 16290427 -103454471 + AluSx SINE Alu 1 312 0 4126 199 19 59 chr13 16290427 16290792 -103454106 + L1MB2 LINE L1 5987 6204 -203 2254 88 14 0 chr13 16290792 16291086 -103453812 - AluSx SINE Alu -6 306 9 4126 199 19 59 chr13 16291086 16291283 -103453615 + L1MB2 LINE L1 6204 6407 0 329 278 121 31 chr13 16291329 16291552 -103453346 - L2 LINE L2 -1040 2274 2032 408 236 56 23 chr13 16291711 16291927 -103452971 + L1ME3A LINE L1 5845 6122 -48 1690 172 19 19 chr13 16291951 16292259 -103452639 + AluJo SINE Alu 3 310 -2 791 149 0 30 chr13 16292307 16292441 -103452457 + AluJo SINE Alu 4 133 -169 540 246 105 37 chr13 16292868 16293223 -103451675 - MLT1J LTR MaLR -30 481 58 1793 167 0 14 chr13 16293406 16293700 -103451198 - AluSx SINE Alu -22 290 1 1014 171 11 27 chr13 16294326 16294513 -103450385 + AluJo SINE Alu 120 303 -9 333 230 23 0 chr13 16294518 16294605 -103450293 + L1M4 LINE L1 5024 5112 -1034 2331 171 68 16 chr13 16294765 16295249 -103449649 - LTR22 LTR ERVK 0 509 1 278 205 51 39 chr13 16295631 16295709 -103449189 - MIR SINE MIR -64 144 66 2393 67 3 0 chr13 16296024 16296308 -103448590 + AluSp SINE Alu 1 285 -28 180 0 0 0 chr13 16296311 16296331 -103448567 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 2384 74 0 0 chr13 16297901 16298186 -103446712 + AluSx SINE Alu 1 285 -27 8519 49 1 0 chr13 16298259 16299224 -103445674 - LTR5 LTR ERVK -3 966 1 210 118 0 0 chr13 16299229 16299263 -103445635 + (T)n Simple_repeat Simple_repeat 1 34 0 2199 104 3 7 chr13 16299270 16299569 -103445329 + AluSq SINE Alu 1 298 -15 2379 98 0 0 chr13 16299918 16300225 -103444673 + AluSx SINE Alu 1 307 -5 865 186 14 0 chr13 16300227 16300372 -103444526 + AluJo/FRAM SINE Alu 140 286 -26 279 104 0 0 chr13 16300372 16300420 -103444478 + (CA)n Simple_repeat Simple_repeat 2 49 0 2277 113 3 3 chr13 16300512 16300822 -103444076 - AluSq SINE Alu -2 311 2 1986 117 0 66 chr13 16301191 16301296 -103443602 + AluJb SINE Alu 1 111 -201 4093 127 21 68 chr13 16301296 16302021 -103442877 - LTR8 LTR ERV1 0 691 1 1986 117 0 66 chr13 16302021 16302249 -103442649 + AluJb SINE Alu 111 312 0 2301 93 0 0 chr13 16302668 16302958 -103441940 - AluSg SINE Alu -18 292 3 1166 130 0 0 chr13 16303481 16303643 -103441255 + AluSg/x SINE Alu 137 298 -14 1856 122 7 19 chr13 16304110 16304381 -103440517 + AluSx SINE Alu 40 307 -5 5786 21 0 1 chr13 16304381 16305030 -103439868 + L1PA2 LINE L1 5507 6154 -1 1966 139 16 0 chr13 16305181 16305504 -103439394 - L1MA5 LINE L1 0 6300 5973 186 240 0 0 chr13 16305676 16305726 -103439172 + G-rich Low_complexity Low_complexity 3 52 0 21 36 0 0 chr13 16305755 16305783 -103439115 + AT_rich Low_complexity Low_complexity 1 28 0 1704 164 7 45 chr13 16305994 16306304 -103438594 - AluJo SINE Alu -14 298 1 947 227 91 43 chr13 16306327 16306651 -103438247 - MLT1L LTR MaLR -91 524 136 1356 251 40 6 chr13 16306651 16306978 -103437920 - MER58B DNA MER1_type -3 338 1 947 227 91 43 chr13 16306978 16307079 -103437819 - MLT1L LTR MaLR -479 136 41 265 326 80 64 chr13 16307298 16307485 -103437413 - L2 LINE L2 -12 3260 3071 645 284 125 50 chr13 16307653 16308156 -103436742 - LTR67 LTR ERVL -15 542 2 271 264 97 28 chr13 16308168 16308312 -103436586 - L2 LINE L2 -304 2968 2815 21 0 0 0 chr13 16308355 16308376 -103436522 + AT_rich Low_complexity Low_complexity 1 21 0 1736 154 26 4 chr13 16308396 16308668 -103436230 - AluJo SINE Alu -33 279 2 1651 173 0 67 chr13 16309321 16309651 -103435247 - AluJo SINE Alu -4 308 1 415 222 80 91 chr13 16310233 16310297 -103434601 + MIR SINE MIR 86 149 -113 2193 107 3 29 chr13 16310297 16310605 -103434293 + AluSg SINE Alu 1 300 -10 415 222 80 91 chr13 16310605 16310716 -103434182 + MIR SINE MIR 149 259 -3 590 105 0 12 chr13 16310854 16310940 -103433958 - FLAM_A SINE Alu -14 128 44 572 250 0 20 chr13 16310967 16311119 -103433779 - L2 LINE L2 -1 3312 3164 326 281 70 18 chr13 16311131 16311245 -103433653 + L2 LINE L2 3152 3271 -1 1411 179 8 23 chr13 16312799 16313061 -103431837 - AluJb SINE Alu -23 289 32 396 0 0 0 chr13 16313117 16313161 -103431737 + (CA)n Simple_repeat Simple_repeat 2 45 0 2146 143 0 0 chr13 16313821 16314128 -103430770 - AluSx SINE Alu -5 307 1 826 214 21 16 chr13 16314188 16314380 -103430518 - MIR SINE MIR -10 252 60 1899 91 47 14 chr13 16314673 16314975 -103429923 + AluY SINE Alu 1 311 0 1271 119 0 0 chr13 16314975 16315151 -103429747 + AluSg/x SINE Alu 125 300 -10 7461 118 19 16 chr13 16315312 16317379 -103427519 + L1MA1 LINE L1 4234 6302 0 955 228 122 108 chr13 16317441 16317976 -103426922 + MLT1H1 LTR MaLR 1 555 0 1700 132 19 16 chr13 16318449 16318706 -103426192 - AluJb SINE Alu -54 258 1 1351 215 21 30 chr13 16318717 16319047 -103425851 - L1ME1 LINE L1 -5 6161 5835 322 298 119 18 chr13 16319147 16319315 -103425583 + MER5A DNA MER1_type 1 185 -4 391 214 31 31 chr13 16319343 16319441 -103425457 + MIR SINE MIR 40 137 -125 486 278 38 48 chr13 16319452 16319661 -103425237 - L2 LINE L2 -1 3312 3106 625 154 34 26 chr13 16319944 16320061 -103424837 - MLT1J LTR MaLR -326 185 68 7915 35 6 3 chr13 16320430 16321861 -103423037 - L1PA4 LINE L1 -3 6152 4720 12548 31 1 0 chr13 16321861 16323335 -103421563 + L1PA4 LINE L1 3274 4749 -1397 2100 117 21 0 chr13 16323569 16323859 -103421039 + AluSx SINE Alu 1 296 -16 1695 162 179 17 chr13 16323912 16324331 -103420567 + LTR54B LTR ERV1 8 494 -4 2228 97 0 3 chr13 16324715 16325013 -103419885 - AluSx SINE Alu -15 297 1 2010 95 0 70 chr13 16325027 16325343 -103419555 - AluSx SINE Alu -18 294 1 2244 79 0 0 chr13 16325440 16325740 -103419158 - AluY SINE Alu 0 300 1 1242 219 150 27 chr13 16325936 16326302 -103418596 - MLT1G3 LTR MaLR -10 520 110 620 229 15 0 chr13 16326292 16326423 -103418475 - MER119 DNA MER1_type -277 306 174 * 787 183 100 19 chr13 16326433 16326674 -103418224 - MER2 DNA MER2_type 0 345 24 233 205 0 0 chr13 16326781 16326820 -103418078 - MER119 DNA MER1_type -538 45 7 * 993 291 160 11 chr13 16326809 16327246 -103417652 - MLT1G1 LTR MaLR -89 506 5 2190 96 0 32 chr13 16327404 16327717 -103417181 - AluY SINE Alu -8 303 1 370 279 39 8 chr13 16327733 16327862 -103417036 - L1MC5 LINE L1 -48 7913 7781 602 219 150 43 chr13 16327883 16328116 -103416782 - L1ME2 LINE L1 0 6164 5907 1086 153 34 0 chr13 16328118 16328295 -103416603 - AluSg/x SINE Alu -8 304 122 520 193 196 2 chr13 16328301 16328455 -103416443 - L1ME2 LINE L1 -273 5893 5712 2163 117 0 17 chr13 16328807 16329107 -103415791 - AluSx SINE Alu -17 295 1 1833 172 3 0 chr13 16329890 16330180 -103414718 + AluJo SINE Alu 1 291 -21 41 36 0 0 chr13 16331797 16331852 -103413046 + AT_rich Low_complexity Low_complexity 1 55 0 274 324 69 6 chr13 16332029 16332202 -103412696 + MIR SINE MIR 40 223 -39 2136 84 0 84 chr13 16332515 16332835 -103412063 - AluSg SINE Alu -17 293 1 2227 111 3 7 chr13 16332865 16333172 -103411726 - AluSq SINE Alu -7 306 1 21 0 0 0 chr13 16333339 16333360 -103411538 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 16333405 16333435 -103411463 + AT_rich Low_complexity Low_complexity 1 30 0 2788 16 0 0 chr13 16333933 16334237 -103410661 + AluY SINE Alu 1 304 -7 2055 100 0 91 chr13 16336256 16336422 -103408476 - AluSq SINE Alu -14 299 176 2244 91 3 7 chr13 16336422 16336731 -103408167 - AluSg1 SINE Alu -1 308 1 2055 100 0 91 chr13 16336731 16336893 -103408005 - AluSq SINE Alu -137 176 1 2331 58 29 23 chr13 16337159 16337492 -103407406 - AluY SINE Alu 0 335 1 25 0 0 0 chr13 16338021 16338046 -103406852 + GC_rich Low_complexity Low_complexity 1 25 0 2256 177 65 0 chr13 16341758 16342142 -103402756 - LTR57 LTR ERVL -2 409 1 215 228 0 35 chr13 16342324 16342381 -103402517 - L2 LINE L2 -93 3220 3166 1245 228 4 0 chr13 16342654 16342900 -103401998 + AluJo SINE Alu 39 285 -27 2471 84 10 0 chr13 16343329 16343638 -103401260 + AluSq SINE Alu 1 312 -1 238 314 0 35 chr13 16343987 16344073 -103400825 + L2 LINE L2 3231 3313 0 292 286 152 0 chr13 16344252 16344364 -103400534 + MIR SINE MIR 124 252 -10 188 273 0 0 chr13 16344368 16344412 -103400486 + MIR SINE MIR 219 262 0 413 285 63 39 chr13 16344791 16344998 -103399900 + L1ME4a LINE L1 5615 5826 -295 2343 74 0 0 chr13 16345017 16345348 -103399550 - AluY SINE Alu 0 331 1 2428 223 48 29 chr13 16345490 16346109 -103398789 - L1ME1 LINE L1 -5 6161 5531 276 250 125 11 chr13 16346207 16346295 -103398603 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 16346553 16346576 -103398322 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 16347742 16347766 -103397132 + AT_rich Low_complexity Low_complexity 1 24 0 2099 122 14 0 chr13 16347839 16348134 -103396764 - AluSx SINE Alu -13 299 1 298 261 80 0 chr13 16348278 16348366 -103396532 + MIR SINE MIR 47 141 -121 1013 165 23 6 chr13 16348481 16348657 -103396241 + AluSg/x SINE Alu 133 311 -1 434 208 15 85 chr13 16348742 16348872 -103396026 + MIR SINE MIR 87 207 -55 6128 130 37 26 chr13 16349271 16350309 -103394589 - L1PA15 LINE L1 -4 6161 5112 1977 125 10 10 chr13 16350309 16350605 -103394293 - AluSq SINE Alu -17 296 1 6128 130 37 26 chr13 16350605 16350793 -103394105 - L1PA15 LINE L1 -1053 5112 4928 28 29 0 0 chr13 16351461 16351496 -103393402 + AT_rich Low_complexity Low_complexity 1 35 0 533 278 211 30 chr13 16351670 16351696 -103393202 - L1MC4a LINE L1 -1897 5911 5891 219 114 0 0 chr13 16351696 16351731 -103393167 + (TA)n Simple_repeat Simple_repeat 2 36 0 533 278 211 30 chr13 16351731 16352074 -103392824 - L1MC4a LINE L1 -1917 5891 5475 872 154 7 7 chr13 16352123 16352266 -103392632 - AluJo SINE Alu -169 143 1 471 230 40 43 chr13 16352309 16352647 -103392251 - HAL1 LINE L1 -1011 1496 1059 2376 112 0 0 chr13 16352652 16352964 -103391934 + AluSq SINE Alu 1 312 -1 335 114 0 0 chr13 16353035 16353079 -103391819 - Alu SINE Alu -257 44 1 367 310 33 26 chr13 16353103 16353223 -103391675 - MLT1J1 LTR MaLR -284 188 78 1580 161 3 71 chr13 16353223 16353546 -103391352 - AluJo SINE Alu -11 301 1 367 310 33 26 chr13 16353546 16353623 -103391275 - MLT1J1 LTR MaLR -394 78 3 1204 321 110 32 chr13 16353628 16354438 -103390460 - HAL1 LINE L1 -1618 889 17 462 65 0 0 chr13 16354462 16354524 -103390374 + (TG)n Simple_repeat Simple_repeat 2 63 0 1505 211 3 23 chr13 16354529 16354828 -103390070 - AluJo SINE Alu -19 293 1 183 42 0 0 chr13 16355016 16355040 -103389858 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 627 213 38 27 chr13 16355095 16355359 -103389539 - L1MDa LINE L1 -3890 2650 2444 2063 146 7 0 chr13 16355359 16355661 -103389237 - AluJb SINE Alu -8 304 1 627 213 38 27 chr13 16355661 16355760 -103389138 - L1MDa LINE L1 -4096 2444 2348 1989 114 14 7 chr13 16355786 16356083 -103388815 + AluSq SINE Alu 1 299 -14 2126 117 19 10 chr13 16356089 16356396 -103388502 + AluSx SINE Alu 1 310 -2 1680 154 57 0 chr13 16356450 16356729 -103388169 - AluJo SINE Alu -17 295 1 353 166 47 24 chr13 16357047 16357132 -103387766 + MLT1E LTR MaLR 420 491 -102 820 183 21 0 chr13 16357135 16357277 -103387621 + FRAM SINE Alu 11 155 -21 522 290 100 29 chr13 16357291 16357601 -103387297 + L1ME3A LINE L1 3307 3638 -2508 843 258 34 34 chr13 16357706 16358001 -103386897 + L1ME3A LINE L1 3866 4160 -1986 1457 230 100 56 chr13 16358050 16358550 -103386348 + MLT1E LTR MaLR 70 591 -2 900 218 118 82 chr13 16358552 16358837 -103386061 + L1ME3A LINE L1 4181 4455 -1691 1990 143 0 10 chr13 16358837 16359161 -103385737 + AluSx SINE Alu 1 321 0 900 218 118 82 chr13 16359161 16359277 -103385621 + L1ME3A LINE L1 4455 4565 -1581 2040 146 3 0 chr13 16359277 16359579 -103385319 - AluSq SINE Alu -10 303 1 900 218 118 82 chr13 16359579 16359803 -103385095 + L1ME3A LINE L1 4565 4832 -1314 1918 100 123 9 chr13 16359841 16359852 -103385046 + MSTC LTR MaLR 1 9 -419 2669 98 17 3 chr13 16359852 16360211 -103384687 - THE1B LTR MaLR 0 364 1 1918 100 123 9 chr13 16360211 16360539 -103384359 + MSTC LTR MaLR 9 379 -49 443 226 111 65 chr13 16360539 16360625 -103384273 + L1ME3A LINE L1 4960 5041 -1105 2178 104 44 3 chr13 16360625 16360922 -103383976 + AluSx SINE Alu 1 309 -3 2441 71 0 0 chr13 16360922 16361219 -103383679 + AluY SINE Alu 1 297 -14 443 226 111 65 chr13 16361219 16361437 -103383461 + L1ME3A LINE L1 5040 5279 -867 2243 120 0 7 chr13 16361537 16361846 -103383052 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr13 16361857 16361886 -103383012 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2364 90 3 3 chr13 16361908 16362208 -103382690 + AluSq SINE Alu 1 300 -13 555 226 165 28 chr13 16362209 16362457 -103382441 + L1P5 LINE L1 5292 5573 -583 306 243 37 7 chr13 16362458 16362594 -103382304 + (TA)n Simple_repeat Simple_repeat 1 140 0 567 275 26 0 chr13 16362711 16362900 -103381998 + L1ME3A LINE L1 5746 5939 -231 248 200 27 45 chr13 16363071 16363181 -103381717 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2087 119 3 14 chr13 16363506 16363830 -103381068 + AluSx SINE Alu 1 321 0 2128 124 3 3 chr13 16364210 16364517 -103380381 - AluSx SINE Alu -4 308 2 1858 157 67 6 chr13 16365072 16365417 -103379481 + MER47A DNA MER2_type 1 366 0 196 181 96 72 chr13 16365731 16365814 -103379084 + MIR SINE MIR 117 201 -61 269 250 42 0 chr13 16366383 16366455 -103378443 - L2 LINE L2 0 3272 3198 233 284 17 69 chr13 16366595 16366711 -103378187 + L2 LINE L2 3203 3312 -1 1171 149 78 136 chr13 16366812 16367209 -103377689 - MLT1A2 LTR MaLR 0 374 1 2347 104 0 0 chr13 16367496 16367794 -103377104 - AluSx SINE Alu -14 298 1 2589 140 33 13 chr13 16368149 16368607 -103376291 + L1MB4 LINE L1 5714 6180 0 1773 137 74 0 chr13 16368614 16368885 -103376013 + AluJo SINE Alu 1 291 -21 905 111 0 0 chr13 16370012 16370129 -103374769 + AluSq/x SINE Alu 1 117 -195 2116 116 7 7 chr13 16370307 16370601 -103374297 - AluSx SINE Alu -18 294 1 234 0 0 0 chr13 16370911 16370937 -103373961 + (CCA)n Simple_repeat Simple_repeat 1 26 0 830 139 16 0 chr13 16370993 16371122 -103373776 - AluJb SINE Alu -181 131 1 488 208 47 0 chr13 16371123 16371252 -103373646 + L1M4 LINE L1 4054 4188 -1958 1622 142 67 8 chr13 16371275 16371542 -103373356 + AluSq SINE Alu 3 285 -28 189 0 0 0 chr13 16371551 16371572 -103373326 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 999 168 12 6 chr13 16371572 16371739 -103373159 + FRAM SINE Alu 2 169 -7 23 33 0 0 chr13 16371877 16371907 -103372991 + AT_rich Low_complexity Low_complexity 1 30 0 2132 114 0 7 chr13 16371916 16372213 -103372685 + AluSx SINE Alu 1 295 -17 1996 82 0 0 chr13 16372447 16372691 -103372207 + AluSx SINE Alu 56 299 -13 2015 113 0 3 chr13 16373523 16373805 -103371093 + AluSx SINE Alu 1 281 -31 518 83 0 0 chr13 16373879 16373951 -103370947 - LTR5 LTR ERVK 0 969 898 1871 157 10 0 chr13 16374662 16374955 -103369943 - AluSx SINE Alu -16 296 1 189 0 0 0 chr13 16376533 16376554 -103368344 + (TGGA)n Simple_repeat Simple_repeat 1 21 0 2301 93 0 0 chr13 16377980 16378270 -103366628 + AluSg SINE Alu 3 292 -18 901 157 6 35 chr13 16378687 16378859 -103366039 - AluJb SINE Alu 0 312 146 26 30 0 0 chr13 16378867 16378900 -103365998 + AT_rich Low_complexity Low_complexity 1 33 0 1734 140 74 0 chr13 16379635 16379906 -103364992 - AluJo SINE Alu -21 291 1 1308 155 52 16 chr13 16379913 16380165 -103364733 - L1MB4 LINE L1 0 6180 5920 2287 307 42 22 chr13 16380265 16381562 -103363336 - L1M2c LINE L1 -5294 1495 752 26 30 0 0 chr13 16382731 16382764 -103362134 + AT_rich Low_complexity Low_complexity 1 33 0 1482 158 8 15 chr13 16382886 16383145 -103361753 + L1PA15 LINE L1 5905 6161 -4 394 244 0 76 chr13 16383544 16383675 -103361223 - MIR SINE MIR -55 207 87 654 223 25 69 chr13 16383746 16383948 -103360950 - AluSg/x SINE Alu 0 312 120 396 0 0 0 chr13 16384466 16384510 -103360388 + (TG)n Simple_repeat Simple_repeat 2 45 0 1342 191 8 23 chr13 16384566 16384828 -103360070 + AluJb SINE Alu 32 289 -23 7360 29 2 4 chr13 16385360 16386362 -103358536 + L1PA2 LINE L1 5111 6113 -42 188 111 28 0 chr13 16386623 16386659 -103358239 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1540 212 0 3 chr13 16387576 16387882 -103357016 + AluSq SINE Alu 1 305 -8 11810 75 3 3 chr13 16388038 16389629 -103355269 + L1P LINE L1 3813 5403 -743 1836 110 92 4 chr13 16392119 16392392 -103352506 + AluSg SINE Alu 1 297 -13 10596 37 1 0 chr13 16392938 16394220 -103350678 + L1P LINE L1 2827 4109 -2037 2153 120 0 17 chr13 16394521 16394821 -103350077 - AluSx SINE Alu -17 295 1 1847 172 3 0 chr13 16395608 16395898 -103349000 + AluJo SINE Alu 1 291 -21 12508 85 74 5 chr13 16396333 16398125 -103346773 + L1P LINE L1 1 1916 -4230 4937 213 43 13 chr13 16398249 16400040 -103344858 + L1M2 LINE L1 1617 3457 -3391 5283 42 7 2 chr13 16400140 16401239 -103343659 - L1P2 LINE L1 -336 5819 4720 * 10281 75 6 4 chr13 16401234 16402637 -103342261 + L1P LINE L1 3269 4673 -1473 824 158 32 50 chr13 16404119 16404340 -103340558 + L1MA5A LINE L1 6075 6291 -6 1439 194 44 11 chr13 16404347 16404667 -103340231 + L1ME LINE L1 5269 5599 -567 1555 264 60 9 chr13 16404673 16405108 -103339790 + L1MCa LINE L1 22 478 -5948 359 192 20 50 chr13 16405125 16405224 -103339674 + L1MCa LINE L1 443 538 -5888 4063 118 5 0 chr13 16405462 16406054 -103338844 + Tigger1 DNA MER2_type 588 1182 -1236 5816 238 34 28 chr13 16406055 16407578 -103337320 + L1 LINE L1 14 1380 -5409 318 26 0 0 chr13 16408972 16409011 -103335887 + (CA)n Simple_repeat Simple_repeat 1 39 0 2228 119 0 0 chr13 16410728 16411022 -103333876 + AluSg SINE Alu 1 294 -16 643 229 68 71 chr13 16411524 16411847 -103333051 - L1MC4 LINE L1 -678 7364 7043 504 283 82 80 chr13 16412190 16412728 -103332170 - L1MEd LINE L1 -4900 1219 681 365 167 12 48 chr13 16412792 16412876 -103332022 - MER94 DNA DNA -48 86 6 422 226 13 69 chr13 16413006 16413165 -103331733 - MER57A LTR ERV1 -4 399 250 2587 198 41 68 chr13 16413289 16413669 -103331229 + L1 LINE L1 3314 3703 -3085 2128 79 7 7 chr13 16413669 16413944 -103330954 + L1PA5 LINE L1 5860 6150 -4 2587 198 41 68 chr13 16413944 16414466 -103330432 + L1 LINE L1 3703 4192 -2596 2170 158 10 5 chr13 16414472 16414859 -103330039 + Tigger1 DNA MER2_type 2029 2417 -1 199 167 30 0 chr13 16414864 16414930 -103329968 + (TA)n Simple_repeat Simple_repeat 1 68 0 1041 159 36 36 chr13 16415739 16415934 -103328964 - AluJb SINE Alu -117 195 1 380 193 202 0 chr13 16415934 16416048 -103328850 - L1MB8 LINE L1 -269 5909 5773 1907 104 57 13 chr13 16416059 16416375 -103328523 - L1MA4A LINE L1 0 6303 5974 986 94 8 0 chr13 16416376 16416503 -103328395 - AluSq/x SINE Alu -184 128 1 5459 102 28 15 chr13 16416796 16418295 -103326603 - L1PA15 LINE L1 -8 6157 4675 308 309 115 36 chr13 16418296 16418548 -103326350 + L2 LINE L2 2487 2758 -556 310 400 24 28 chr13 16418591 16418846 -103326052 + L2 LINE L2 2839 3092 -180 563 315 90 21 chr13 16418855 16419233 -103325665 - L1MEd LINE L1 -5262 1372 969 407 187 58 79 chr13 16419449 16419588 -103325310 - L1MEd LINE L1 -5924 618 483 2280 108 16 0 chr13 16419756 16420062 -103324836 + AluSx SINE Alu 1 311 -1 1499 261 72 19 chr13 16420074 16420591 -103324307 + L1M4 LINE L1 2 545 -5997 2354 105 0 13 chr13 16420601 16420916 -103323982 + AluY SINE Alu 1 311 0 2220 197 21 0 chr13 16420953 16421389 -103323509 - MER44D DNA MER2_type -61 544 228 679 221 11 103 chr13 16421392 16421654 -103323244 + L1M4 LINE L1 1866 2103 -4543 418 283 18 27 chr13 16421685 16421904 -103322994 + L1M4 LINE L1 2287 2503 -4143 801 287 89 43 chr13 16421932 16422538 -103322360 + L1M4 LINE L1 2616 3249 -3395 3045 193 34 5 chr13 16422657 16423444 -103321454 + L1M4 LINE L1 2462 3271 -2875 1513 222 90 28 chr13 16423526 16423668 -103321230 + L1M4 LINE L1 4009 4141 -2005 180 0 0 0 chr13 16423668 16423688 -103321210 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1513 222 90 28 chr13 16423688 16424089 -103320809 + L1M4 LINE L1 4141 4586 -1560 21815 48 45 3 chr13 16424197 16427149 -103317749 - L1P LINE L1 -3070 3076 1 2113 112 3 0 chr13 16427770 16428095 -103316803 + AluSg SINE Alu 1 326 0 203 185 0 19 chr13 16428258 16428312 -103316586 + (CATA)n Simple_repeat Simple_repeat 2 54 0 460 219 0 0 chr13 16429230 16429312 -103315586 + AluS SINE Alu 1 82 -230 3950 239 26 28 chr13 16479313 16480510 -103264388 - L1P LINE L1 -2604 3542 2348 2099 140 0 0 chr13 16480512 16480804 -103264094 + AluSg SINE Alu 1 292 -18 183 264 0 56 chr13 16483450 16483522 -103261376 + L2 LINE L2 2154 2221 -1093 2148 132 0 0 chr13 16484143 16484438 -103260460 - AluSx SINE Alu -17 295 1 1753 201 36 0 chr13 16485876 16486205 -103258693 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 16486877 16486898 -103258000 + AT_rich Low_complexity Low_complexity 1 21 0 3704 129 5 52 chr13 16486926 16487547 -103257351 - LTR14B LTR ERVK 0 608 17 377 297 121 18 chr13 16487642 16487807 -103257091 - MER5A DNA MER1_type 0 189 8 242 329 0 12 chr13 16487842 16487924 -103256974 - MER5A DNA MER1_type -31 158 78 2281 174 48 30 chr13 16488067 16488567 -103256331 - LTR22 LTR ERVK 0 509 1 1639 187 0 14 chr13 16488700 16488989 -103255909 + AluJo SINE Alu 1 285 -27 2128 138 0 3 chr13 16489000 16489311 -103255587 + AluSq SINE Alu 1 310 -3 420 285 65 40 chr13 16490513 16490713 -103254185 + MIR SINE MIR 48 252 -10 852 161 112 0 chr13 16491041 16491184 -103253714 - AluSc SINE Alu -16 293 135 391 244 109 0 chr13 16491251 16491370 -103253528 - Charlie7 DNA MER1_type -266 2346 2215 1096 107 0 0 chr13 16491527 16491667 -103253231 + AluSx SINE Alu 61 200 -112 602 121 0 78 chr13 16491710 16491790 -103253108 + AluSx SINE Alu 201 271 -39 428 0 0 19 chr13 16491790 16491843 -103253055 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 602 121 0 78 chr13 16491843 16491878 -103253020 + AluSx SINE Alu 271 307 -3 1745 156 43 7 chr13 16491969 16492251 -103252647 - AluJo SINE Alu -19 293 2 575 163 7 118 chr13 16492275 16492410 -103252488 - AluJb SINE Alu -187 125 6 1578 85 5 5 chr13 16492488 16492688 -103252210 + AluY SINE Alu 95 294 -17 383 234 64 26 chr13 16492692 16493002 -103251896 - L1MC5 LINE L1 -302 7659 7304 2011 153 0 0 chr13 16493203 16493503 -103251395 + AluJb SINE Alu 1 300 -12 375 192 0 0 chr13 16493692 16493770 -103251128 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 304 272 0 22 chr13 16493772 16493864 -103251034 + L1MC4 LINE L1 6614 6703 -1339 602 178 11 33 chr13 16493866 16494046 -103250852 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 674 231 17 103 chr13 16494054 16494575 -103250323 + MER115 DNA AcHobo 71 4031 0 802 216 25 6 chr13 16495582 16495744 -103249154 - FRAM SINE Alu -14 162 1 21 0 0 0 chr13 16496138 16496159 -103248739 + AT_rich Low_complexity Low_complexity 1 21 0 504 279 62 12 chr13 16496445 16496685 -103248213 + L2 LINE L2 2033 2284 -1030 1717 143 34 4 chr13 16496711 16496976 -103247922 - AluJb SINE Alu -39 273 1 1147 272 45 32 chr13 16496976 16497685 -103247213 - L1ME LINE L1 -4823 1257 536 803 323 30 55 chr13 16497829 16498361 -103246537 - L1ME LINE L1 -5539 531 13 1817 166 0 3 chr13 16498572 16498877 -103246021 + AluJb SINE Alu 1 304 0 429 219 57 19 chr13 16499002 16499107 -103245791 + MLT1J2 LTR MaLR 3 111 -339 443 274 74 57 chr13 16499169 16499344 -103245554 + MLT1J2 LTR MaLR 238 415 -31 638 211 102 0 chr13 16499730 16499877 -103245021 + L1PA16 LINE L1 5999 6160 -6 1202 162 18 0 chr13 16500123 16500345 -103244553 - L1MA4 LINE L1 0 6300 6075 1057 214 7 65 chr13 16500416 16500724 -103244174 - L1MA10 LINE L1 -13 6321 6032 406 255 0 0 chr13 16501092 16501186 -103243712 - MIR SINE MIR -110 152 59 488 239 92 0 chr13 16501279 16501409 -103243489 - MIR SINE MIR -65 197 56 2524 44 0 0 chr13 16502855 16503149 -103241749 + AluY SINE Alu 1 294 -17 1786 177 3 3 chr13 16503573 16503878 -103241020 + AluJb SINE Alu 2 306 -6 233 279 0 15 chr13 16503888 16503956 -103240942 - MIR3 SINE MIR -32 176 110 304 182 76 0 chr13 16504022 16504088 -103240810 - MIR SINE MIR -60 148 78 1761 174 0 17 chr13 16504222 16504515 -103240383 - AluJo SINE Alu -9 303 16 464 291 55 21 chr13 16505070 16505611 -103239287 + L1MC/D LINE L1 4928 5481 -750 849 163 27 0 chr13 16505634 16505781 -103239117 + FAM SINE Alu 1 42 -7 998 111 0 7 chr13 16505829 16505964 -103238934 - AluSq/x SINE Alu -179 134 1 1800 123 93 13 chr13 16506075 16506385 -103238513 - MER1B DNA MER1_type -2 335 1 1118 131 0 0 chr13 16507134 16507294 -103237604 + FRAM SINE Alu 2 161 -15 523 187 81 8 chr13 16507494 16507617 -103237281 - L1MB4 LINE L1 -1 6179 6048 2382 91 0 19 chr13 16507884 16508202 -103236696 + AluSx SINE Alu 1 312 0 310 279 158 6 chr13 16508363 16508521 -103236377 - MIR SINE MIR -79 183 2 248 200 36 91 chr13 16508537 16508647 -103236251 - L1MB4 LINE L1 -2330 5478 5375 1680 148 7 7 chr13 16508670 16508940 -103235958 - AluJb SINE Alu -40 272 3 770 171 0 8 chr13 16508948 16509071 -103235827 - FLAM_C SINE Alu -17 126 5 22 35 0 0 chr13 16510117 16510146 -103234752 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 16510322 16510367 -103234531 + AT_rich Low_complexity Low_complexity 1 45 0 261 241 93 28 chr13 16511248 16511356 -103233542 - L2 LINE L2 -1 3271 3157 893 224 91 5 chr13 16511601 16511811 -103233087 - L1ME1 LINE L1 -11 6155 5928 210 91 0 0 chr13 16512141 16512174 -103232724 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 842 144 16 171 chr13 16512474 16512779 -103232119 + LTR49 LTR ERV1 12 269 -326 398 188 25 19 chr13 16512887 16513003 -103231895 + LTR49 LTR ERV1 246 485 -254 352 203 174 80 chr13 16513026 16513164 -103231734 + LTR48 LTR ERV1 607 757 -30 2326 216 115 36 chr13 16513241 16513903 -103230995 + MER21B LTR ERV1 98 811 -52 26 82 0 0 chr13 16515186 16515247 -103229651 + GC_rich Low_complexity Low_complexity 1 61 0 1302 80 150 0 chr13 16515657 16515857 -103229041 + MER30 DNA MER1_type 1 230 0 2160 121 0 10 chr13 16516607 16516930 -103227968 - AluSx SINE Alu 0 320 1 860 159 7 0 chr13 16517042 16517180 -103227718 + L1M4 LINE L1 5342 5480 -694 1574 180 32 0 chr13 16517189 16517467 -103227431 + AluJb SINE Alu 1 287 -25 294 273 9 59 chr13 16517521 16517682 -103227216 + FRAM SINE Alu 8 135 -31 2364 108 0 0 chr13 16518640 16518945 -103225953 - AluSq SINE Alu -8 305 1 2355 109 0 0 chr13 16519872 16520175 -103224723 - AluSx SINE Alu -9 303 1 496 272 63 24 chr13 16522414 16522620 -103222278 - MIR SINE MIR -48 214 1 207 281 0 18 chr13 16522614 16522671 -103222227 + MIR SINE MIR 2 57 -205 * 195 252 118 39 chr13 16523119 16523246 -103221652 + L2 LINE L2 1429 1565 -1749 1643 125 27 116 chr13 16523375 16523710 -103221188 - AluJb SINE Alu -7 305 1 196 241 0 0 chr13 16523801 16523855 -103221043 + MIR SINE MIR 204 257 -5 732 261 336 8 chr13 16523999 16524784 -103220114 + L2 LINE L2 1587 2629 -685 764 258 104 13 chr13 16524856 16525174 -103219724 + LTR16A LTR ERVL 104 450 0 1116 280 54 19 chr13 16525198 16525812 -103219086 + L2 LINE L2 2668 3313 0 1753 180 0 10 chr13 16526228 16526522 -103218376 - AluJb SINE Alu -21 291 1 809 136 0 23 chr13 16526558 16526690 -103218208 - FLAM_A SINE Alu 0 142 14 1597 179 17 10 chr13 16527595 16527741 -103217157 + AluJo SINE Alu 1 144 -168 2438 74 0 3 chr13 16527741 16528040 -103216858 + AluY SINE Alu 1 298 -13 1597 179 17 10 chr13 16528040 16528184 -103216714 + AluJo SINE Alu 144 293 -19 216 0 0 0 chr13 16528184 16528208 -103216690 + (TA)n Simple_repeat Simple_repeat 2 25 0 2108 135 10 3 chr13 16529163 16529460 -103215438 - AluJo SINE Alu -13 299 1 565 15 0 0 chr13 16529901 16529969 -103214929 - L1PA6 LINE L1 -1 6153 6086 279 36 15 0 chr13 16529969 16530009 -103214889 + L1PA5 LINE L1 5929 5972 -182 2428 53 3 7 chr13 16530027 16530331 -103214567 - AluY SINE Alu -8 303 1 2460 77 0 0 chr13 16530333 16530644 -103214254 - AluY SINE Alu 0 311 1 189 0 0 0 chr13 16531262 16531283 -103213615 + (TG)n Simple_repeat Simple_repeat 2 22 0 1573 164 6 61 chr13 16531283 16531456 -103213442 - AluJo SINE Alu -26 286 133 2375 72 0 3 chr13 16531456 16531748 -103213150 + AluY SINE Alu 1 291 -20 1573 164 6 61 chr13 16531748 16531875 -103213023 - AluJo SINE Alu -179 133 1 10039 119 18 3 chr13 16531961 16533418 -103211480 + Tigger1 DNA MER2_type 1 1478 -940 2363 107 3 0 chr13 16533419 16533728 -103211170 + AluSq SINE Alu 1 310 -3 632 188 58 36 chr13 16533746 16533884 -103211014 + FRAM SINE Alu 20 160 -16 6096 125 21 2 chr13 16533884 16534814 -103210084 + Tigger1 DNA MER2_type 1471 2418 0 376 325 47 0 chr13 16534834 16535003 -103209895 - L1ME3A LINE L1 -288 5882 5706 1433 234 6 6 chr13 16535019 16535331 -103209567 - AluJo SINE Alu 0 312 1 1039 118 0 0 chr13 16535331 16535466 -103209432 - AluSq/x SINE Alu -177 135 1 339 249 0 4 chr13 16535473 16535578 -103209320 - L1ME3A LINE L1 -803 5361 5259 273 280 43 11 chr13 16535591 16535684 -103209214 + MIR SINE MIR 47 142 -120 1744 158 0 21 chr13 16535733 16536012 -103208886 - AluJo SINE Alu -39 273 1 2447 77 0 0 chr13 16536454 16536752 -103208146 - AluY SINE Alu -13 298 1 237 263 60 30 chr13 16536880 16537013 -103207885 - L1ME3A LINE L1 -1082 5064 4928 296 273 10 10 chr13 16537188 16537287 -103207611 - L1ME3A LINE L1 -1499 4647 4549 699 186 0 0 chr13 16537704 16537822 -103207076 - FLAM_C SINE Alu -15 118 1 389 281 29 41 chr13 16538202 16538444 -103206454 + L1ME4a LINE L1 5714 5952 -169 269 111 0 0 chr13 16538453 16538498 -103206400 + FLAM_A SINE Alu 89 133 0 1948 131 0 39 chr13 16538513 16538819 -103206079 + AluSx SINE Alu 1 294 -18 2422 72 0 0 chr13 16538823 16539116 -103205782 + AluY SINE Alu 2 294 -17 2419 77 3 0 chr13 16539123 16539422 -103205476 + AluSc SINE Alu 1 300 -9 233 163 0 0 chr13 16539474 16539517 -103205381 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 16539827 16539967 -103204931 - MER63 DNA MER1_type -276 786 5 435 155 70 120 chr13 16540010 16540152 -103204746 + L1ME4a LINE L1 5985 6119 -2 2118 132 0 0 chr13 16540521 16540808 -103204090 - AluSx SINE Alu -25 287 1 3151 165 79 27 chr13 16540814 16541470 -103203428 - L1MB5 LINE L1 0 6174 5485 2247 117 0 0 chr13 16542764 16543064 -103201834 + AluSg SINE Alu 1 300 -10 206 286 62 27 chr13 16543345 16543457 -103201441 + L2 LINE L2 3150 3265 -7 2007 162 24 26 chr13 16543649 16544032 -103200866 + MLT1B LTR MaLR 1 382 -8 23 0 0 0 chr13 16544322 16544345 -103200553 + AT_rich Low_complexity Low_complexity 1 23 0 310 193 59 82 chr13 16544467 16544602 -103200296 - L1ME4a LINE L1 -48 6073 5942 561 160 0 114 chr13 16544734 16544865 -103200033 - FLAM_A SINE Alu -13 120 5 24 53 0 0 chr13 16545099 16545137 -103199761 + AT_rich Low_complexity Low_complexity 1 38 0 868 128 45 0 chr13 16545175 16545308 -103199590 + FLAM_C SINE Alu 3 141 -2 181 300 29 29 chr13 16545867 16545937 -103198961 + MIR3 SINE MIR 87 156 -52 23 0 0 0 chr13 16546193 16546216 -103198682 + AT_rich Low_complexity Low_complexity 1 23 0 190 207 244 0 chr13 16547387 16547469 -103197429 - MIR SINE MIR -71 137 36 297 0 0 0 chr13 16548404 16548437 -103196461 + (TG)n Simple_repeat Simple_repeat 1 33 0 229 252 83 9 chr13 16549093 16549206 -103195692 + MIR SINE MIR 45 170 -66 3712 57 4 13 chr13 16551614 16552091 -103192807 - L1PA7 LINE L1 0 6154 5682 368 293 135 40 chr13 16552812 16553160 -103191738 + L1ME4a LINE L1 5504 5884 -237 657 203 27 20 chr13 16553964 16554112 -103190786 - L1PA16 LINE L1 0 6166 6018 3799 166 13 21 chr13 16554343 16555106 -103189792 - L1MA3 LINE L1 0 6305 5549 24 32 0 0 chr13 16555983 16556014 -103188884 + AT_rich Low_complexity Low_complexity 1 31 0 739 171 0 0 chr13 16556814 16556931 -103187967 + FLAM_A SINE Alu 1 117 -16 354 339 18 0 chr13 16558541 16558653 -103186245 - L2 LINE L2 -259 3054 2941 184 167 48 24 chr13 16560438 16560480 -103184418 + MER5A DNA MER1_type 43 85 -104 * 351 189 156 11 chr13 16560464 16560554 -103184344 - MER5A DNA MER1_type -77 112 10 327 25 0 0 chr13 16562736 16562776 -103182122 + (TG)n Simple_repeat Simple_repeat 1 40 0 463 188 21 0 chr13 16563273 16563369 -103181529 - Charlie1 DNA MER1_type -45 2716 2619 1098 206 5 0 chr13 16564841 16565050 -103179848 + AluJb SINE Alu 97 306 -6 2044 121 0 0 chr13 16565389 16565662 -103179236 + AluSx SINE Alu 1 273 -39 490 181 0 0 chr13 16565664 16565747 -103179151 + AluJb SINE Alu 206 288 -24 949 189 0 0 chr13 16565800 16565964 -103178934 + FRAM SINE Alu 8 171 -5 3649 162 32 0 chr13 16565983 16566644 -103178254 + L1MB3 LINE L1 5472 6153 -30 579 190 50 25 chr13 16568091 16568212 -103176686 - AluJb SINE Alu -15 297 174 1098 206 5 0 chr13 16568388 16568597 -103176301 + AluJb SINE Alu 97 306 -6 2244 124 0 0 chr13 16568936 16569243 -103175655 + AluSx SINE Alu 1 307 -5 24 32 0 0 chr13 16569825 16569856 -103175042 + AT_rich Low_complexity Low_complexity 1 31 0 1231 108 5 5 chr13 16570643 16570838 -103174060 - L1MA1 LINE L1 0 6302 6108 25 31 0 0 chr13 16571032 16571064 -103173834 + AT_rich Low_complexity Low_complexity 1 32 0 9563 219 30 20 chr13 16571073 16573781 -103171117 - L1 LINE L1 -1438 5410 2675 763 158 0 0 chr13 16573819 16573933 -103170965 - AluJo SINE Alu -21 291 178 1999 177 92 0 chr13 16573933 16574323 -103170575 + MSTB LTR MaLR 1 426 0 8418 196 18 11 chr13 16574390 16576009 -103168889 + MSTB-int LTR MaLR 22 1651 0 2081 202 52 2 chr13 16576009 16576410 -103168488 + MSTB LTR MaLR 1 421 -5 789 226 11 32 chr13 16576410 16576600 -103168298 - AluJo SINE Alu -126 186 1 1462 235 35 19 chr13 16576601 16577023 -103167875 - L1 LINE L1 -4180 2669 2241 282 73 0 0 chr13 16577027 16577068 -103167830 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 402 21 0 0 chr13 16577067 16577114 -103167784 + (TA)n Simple_repeat Simple_repeat 2 48 0 298 248 142 49 chr13 16577955 16578140 -103166758 + L1ME LINE L1 5387 5588 -533 2504 273 114 40 chr13 16578671 16580110 -103164788 + L2 LINE L2 1778 3313 0 7062 23 0 1 chr13 16581297 16582119 -103162779 + L1PA4 LINE L1 5332 6152 -3 341 279 279 27 chr13 16582410 16582704 -103162194 - L2 LINE L2 -1308 2006 1639 662 269 34 19 chr13 16583499 16583707 -103161191 + MIR SINE MIR 6 216 -46 2246 98 7 0 chr13 16584050 16584346 -103160552 + AluSg SINE Alu 1 298 -12 3162 250 26 9 chr13 16584737 16585938 -103158960 + L1PA16 LINE L1 1330 2574 -4223 8472 247 39 20 chr13 16585943 16588367 -103156531 + L1PA16 LINE L1 2787 5263 -1534 1819 162 17 3 chr13 16588367 16588663 -103156235 - AluJb SINE Alu -12 300 1 8472 247 39 20 chr13 16588663 16588790 -103156108 + L1PA16 LINE L1 5263 5386 -1411 2519 184 20 2 chr13 16588790 16589280 -103155618 + L1PA16 LINE L1 6313 6811 -6 281 360 64 41 chr13 16589805 16589977 -103154921 + L2 LINE L2 2564 2739 -575 604 250 0 0 chr13 16590122 16590266 -103154632 - L1MA10 LINE L1 -11 6323 6180 1036 177 24 141 chr13 16590284 16590576 -103154322 - L1ME LINE L1 -571 5595 5367 1839 167 0 0 chr13 16590576 16590882 -103154016 + L1PB1 LINE L1 5831 6136 -15 1036 177 24 141 chr13 16590882 16591072 -103153826 - L1ME LINE L1 -799 5367 5156 7646 26 25 21 chr13 16591078 16592105 -103152793 - L1PA4 LINE L1 -8 6147 5120 744 249 61 6 chr13 16592200 16592381 -103152517 - MER58A DNA MER1_type -32 192 2 1571 226 69 24 chr13 16592406 16592857 -103152041 - L1ME LINE L1 -1947 4199 3729 3122 158 23 11 chr13 16592867 16593441 -103151457 - L1MC1 LINE L1 -19 6314 5734 1694 189 0 16 chr13 16595218 16595530 -103149368 - AluJo SINE Alu -5 307 1 430 292 112 11 chr13 16596259 16596536 -103148362 + L1M4 LINE L1 4017 4321 -1825 268 250 158 7 chr13 16596562 16596714 -103148184 + L1M4 LINE L1 4378 4552 -1594 2953 178 61 8 chr13 16596868 16597899 -103146999 - Tigger1 DNA MER2_type 0 2418 1301 289 304 80 22 chr13 16601444 16601582 -103143316 + MER5B DNA MER1_type 1 146 -32 280 293 57 0 chr13 16602161 16602318 -103142580 - L1ME LINE L1 -2402 3744 3579 414 296 76 35 chr13 16602768 16603082 -103141816 - L1ME4a LINE L1 -284 5837 5511 209 211 0 0 chr13 16604706 16604744 -103140154 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 459 292 51 17 chr13 16607904 16608082 -103136816 - L2 LINE L2 -410 2904 2721 2106 83 54 0 chr13 16608741 16609019 -103135879 + AluSp SINE Alu 3 295 -18 1236 185 12 62 chr13 16609392 16609716 -103135182 - L1MB8 LINE L1 0 6178 5871 3457 136 31 4 chr13 16609748 16610262 -103134636 + MER1A DNA MER1_type 2 529 0 1963 167 83 0 chr13 16610262 16610630 -103134268 - MSTB LTR MaLR -23 403 5 590 174 82 10 chr13 16610630 16610765 -103134133 - L1MB8 LINE L1 -308 5876 5743 6435 183 37 91 chr13 16611053 16613112 -103131786 - L1MB8 LINE L1 -756 5390 3433 514 167 29 0 chr13 16613586 16613688 -103131210 - L1MA9 LINE L1 -38 6274 6170 646 297 12 6 chr13 16615273 16615438 -103129460 + FAM SINE Alu 1 166 -9 1606 200 0 20 chr13 16615457 16615752 -103129146 - AluJo SINE Alu -23 289 1 9453 106 16 6 chr13 16616326 16618570 -103126328 - L1PA8 LINE L1 -5 6167 3905 10382 104 10 3 chr13 16618690 16620322 -103124576 - L1P3 LINE L1 -1676 4785 3142 40240 35 27 0 chr13 16620882 16626868 -103118030 - L1PA2 LINE L1 -4 6151 3 11895 129 6 44 chr13 16626868 16627852 -103117046 - L1P3 LINE L1 -3304 3157 2137 2341 40 0 27 chr13 16627852 16628148 -103116750 + L1PA6 LINE L1 5865 6152 -2 11895 129 6 44 chr13 16628148 16630063 -103114835 - L1P3 LINE L1 -4324 2137 299 209 286 71 71 chr13 16630502 16630586 -103114312 + L2 LINE L2 3174 3257 -15 358 320 40 20 chr13 16632662 16632812 -103112086 + MIR3 SINE MIR 8 160 -48 4698 78 17 95 chr13 16634478 16635309 -103109589 - MER4E LTR ERV1 0 766 1 207 323 144 72 chr13 16636182 16636612 -103108286 + L2 LINE L2 2812 3272 0 2236 105 20 0 chr13 16637166 16637470 -103107428 + AluSg SINE Alu 1 310 0 225 0 0 0 chr13 16637801 16637826 -103107072 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1755 242 73 4 chr13 16637894 16638577 -103106321 - L1MC4 LINE L1 -149 7893 7012 2565 204 35 75 chr13 16638608 16639474 -103105424 - L1MC4 LINE L1 -6 8036 7206 2213 79 3 26 chr13 16639524 16639827 -103105071 + AluSp SINE Alu 14 309 -4 661 145 0 0 chr13 16639827 16639944 -103104954 + L1MA3 LINE L1 6145 6261 -44 414 0 0 0 chr13 16639944 16639990 -103104908 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr13 16639996 16640021 -103104877 + AT_rich Low_complexity Low_complexity 1 25 0 1063 208 5 0 chr13 16640021 16640233 -103104665 - Tigger2 DNA MER2_type -2170 548 336 22 35 0 0 chr13 16643116 16643145 -103101753 + AT_rich Low_complexity Low_complexity 1 29 0 309 264 88 26 chr13 16643318 16643587 -103101311 - L1MC/D LINE L1 -751 5395 5195 12944 185 34 5 chr13 16644103 16645816 -103099082 - L1PB1 LINE L1 -5 6862 5201 387 0 0 0 chr13 16645816 16645859 -103099039 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 12944 185 34 5 chr13 16645859 16648596 -103096302 - L1PB1 LINE L1 -1666 5201 1851 5610 160 24 5 chr13 16648604 16650449 -103094449 - L1PB1 LINE L1 0 6867 4994 350 198 0 0 chr13 16651220 16651301 -103093597 + L1 LINE L1 4213 4293 -1853 9418 196 6 5 chr13 16651303 16653582 -103091316 - L1PB1 LINE L1 -1820 5042 2704 1056 101 6 0 chr13 16653894 16654062 -103090836 - L1PB1 LINE L1 -4149 2714 2546 7224 185 59 6 chr13 16654162 16656413 -103088485 - L1PB1 LINE L1 -4333 2530 1 9991 148 49 3 chr13 16656425 16658210 -103086688 - L1PBa LINE L1 -4996 1867 1 300 333 101 13 chr13 16658470 16658629 -103086269 - L1M4 LINE L1 -2470 3676 3504 402 243 20 47 chr13 16659801 16659949 -103084949 + MLT1F LTR MaLR 14 157 -410 180 77 0 0 chr13 16660022 16660048 -103084850 + (TCC)n Simple_repeat Simple_repeat 2 27 0 677 220 155 22 chr13 16660054 16660277 -103084621 + MLT1F LTR MaLR 170 481 -112 263 286 0 33 chr13 16660303 16660394 -103084504 + L1M3c LINE L1 670 757 -5906 275 274 14 0 chr13 16660718 16660791 -103084107 + L1M3c LINE L1 1453 1526 -5127 1011 225 116 6 chr13 16660846 16661312 -103083586 - L1M4 LINE L1 -2831 3315 2799 4530 141 27 5 chr13 16661674 16662460 -103082438 - L1MA3 LINE L1 -2 6303 5501 361 307 123 43 chr13 16662460 16662623 -103082275 + L1M2 LINE L1 779 954 -5895 2225 119 0 3 chr13 16663005 16663308 -103081590 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr13 16663743 16663766 -103081132 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10515 208 32 7 chr13 16664725 16667143 -103077755 - L1PA15 LINE L1 -7 6158 3801 626 37 12 0 chr13 16667143 16667224 -103077674 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 10515 208 32 7 chr13 16667224 16667796 -103077102 - L1PA15 LINE L1 -2364 3801 3075 2350 88 3 0 chr13 16667796 16668092 -103076806 - AluSp SINE Alu -1 312 16 10515 208 32 7 chr13 16668092 16668460 -103076438 - L1PA15 LINE L1 -3090 3075 2718 871 130 0 0 chr13 16668462 16668577 -103076321 - AluSq/x SINE Alu -196 117 3 472 274 43 37 chr13 16668730 16668894 -103076004 - L2 LINE L2 -1162 2152 1988 1860 109 76 0 chr13 16668930 16669205 -103075693 - AluSq SINE Alu -17 296 1 1661 160 34 10 chr13 16669249 16669542 -103075356 - AluJb SINE Alu -12 300 1 1904 123 41 0 chr13 16669753 16670022 -103074876 + AluSx SINE Alu 1 280 -32 2339 108 0 13 chr13 16670112 16670428 -103074470 + AluSq SINE Alu 1 312 -1 1431 168 34 48 chr13 16670991 16671212 -103073686 + AluJb SINE Alu 1 219 -93 2338 101 7 0 chr13 16671212 16671519 -103073379 - AluSq SINE Alu -4 309 1 1431 168 34 48 chr13 16671519 16671589 -103073309 + AluJb SINE Alu 219 288 -24 428 284 0 0 chr13 16671645 16671733 -103073165 + AluJ/FLAM SINE Alu 3 90 -222 278 265 114 38 chr13 16671848 16671980 -103072918 - L2 LINE L2 0 3313 3172 182 323 62 21 chr13 16672186 16672282 -103072616 + MIR SINE MIR 12 111 -151 2200 106 7 0 chr13 16672816 16673108 -103071790 + AluSp SINE Alu 2 295 -18 279 203 0 0 chr13 16673400 16673459 -103071439 + (TA)n Simple_repeat Simple_repeat 1 59 0 1161 137 0 12 chr13 16673459 16673627 -103071271 - AluSx SINE Alu -24 286 121 1193 122 0 0 chr13 16674097 16674269 -103070629 + AluSg/x SINE Alu 131 302 -7 2084 130 3 3 chr13 16674358 16674651 -103070247 - AluSx SINE Alu -19 293 1 955 143 0 0 chr13 16674655 16674788 -103070110 - AluSx SINE Alu -180 133 1 203 333 20 50 chr13 16674813 16674912 -103069986 - MER5A DNA MER1_type 0 189 94 560 161 43 0 chr13 16675480 16675573 -103069325 - AluSg/x SINE Alu -9 303 207 1862 178 0 3 chr13 16675710 16676003 -103068895 + AluJo SINE Alu 1 292 -20 320 272 95 44 chr13 16676052 16676210 -103068688 - L1MC/D LINE L1 -1973 5835 5670 2319 88 7 0 chr13 16676212 16676506 -103068392 - AluSx SINE Alu -16 296 1 1855 122 89 0 chr13 16676622 16676893 -103068005 - AluSx SINE Alu -17 295 1 1736 125 0 57 chr13 16676902 16677199 -103067699 - AluSg SINE Alu -6 304 25 225 74 0 0 chr13 16677199 16677226 -103067672 - AluSg SINE Alu -258 44 18 850 142 0 0 chr13 16677226 16677367 -103067531 + AluSc SINE Alu 166 306 -3 1734 99 0 0 chr13 16677522 16677745 -103067153 + AluY SINE Alu 72 294 -17 198 0 0 0 chr13 16678029 16678051 -103066847 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1808 113 12 4 chr13 16678051 16678308 -103066590 - AluSx SINE Alu -29 283 25 822 207 0 7 chr13 16678771 16678916 -103065982 + FRAM SINE Alu 20 163 -13 2303 106 0 0 chr13 16678932 16679234 -103065664 - AluSp SINE Alu -11 302 1 787 171 16 0 chr13 16679234 16679357 -103065541 - AluJb SINE Alu -175 137 13 368 232 65 32 chr13 16679393 16679552 -103065346 - AluS SINE Alu -245 57 1 1992 153 0 0 chr13 16679595 16679882 -103065016 - AluSx SINE Alu -25 287 1 22886 61 1 0 chr13 16680149 16682983 -103061915 + L1P LINE L1 1 2835 -3311 33853 41 2 2 chr13 16682990 16687039 -103057859 + L1P LINE L1 5 4052 -2094 720 149 0 18 chr13 16687142 16687256 -103057642 + FLAM_A SINE Alu 5 116 -17 2314 93 0 3 chr13 16687261 16687561 -103057337 - AluY SINE Alu -12 299 1 661 165 26 9 chr13 16687971 16688086 -103056812 + FLAM_A SINE Alu 1 117 -16 4895 179 37 5 chr13 16688155 16689029 -103055869 - L1MC1 LINE L1 -17 6316 5415 590 311 7 0 chr13 16689400 16689551 -103055347 - FRAM SINE Alu -24 152 1 306 0 0 0 chr13 16689553 16689587 -103055311 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1518 122 0 5 chr13 16689587 16689801 -103055097 - AluSg/x SINE Alu -29 283 71 1535 185 7 14 chr13 16689801 16690077 -103054821 + AluJo SINE Alu 17 290 -22 21 71 0 0 chr13 16691040 16691082 -103053816 + AT_rich Low_complexity Low_complexity 1 42 0 1691 168 18 3 chr13 16691743 16692029 -103052869 - AluJb SINE Alu -12 300 11 2361 72 0 7 chr13 16694751 16695055 -103049843 + AluY SINE Alu 1 302 -9 2209 117 0 0 chr13 16695678 16695987 -103048911 - AluSg SINE Alu -1 309 1 21 36 0 0 chr13 16696340 16696368 -103048530 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 16696446 16696476 -103048422 + AT_rich Low_complexity Low_complexity 1 30 0 294 271 37 19 chr13 16696682 16696789 -103048109 - MER104 DNA Tc2 -61 119 11 1408 51 0 29 chr13 16697500 16697675 -103047223 + AluY SINE Alu 124 293 -18 207 88 0 0 chr13 16699249 16699283 -103045615 + (T)n Simple_repeat Simple_repeat 1 34 0 940 153 26 37 chr13 16700586 16700775 -103044123 - MLT1B LTR MaLR -203 187 1 208 320 61 48 chr13 16700776 16700923 -103043975 + L2 LINE L2 1267 1415 -1899 2244 117 0 0 chr13 16701056 16701363 -103043535 + AluSx SINE Alu 6 312 0 1438 75 0 0 chr13 16701473 16701647 -103043251 - AluSq SINE Alu -6 307 134 1874 110 0 53 chr13 16701652 16701994 -103042904 - AluSx SINE Alu 0 326 1 2161 236 75 10 chr13 16702043 16702745 -103042153 + L1ME LINE L1 3124 3871 -2275 1712 136 48 0 chr13 16702834 16703106 -103041792 - AluJb SINE Alu -27 285 1 2367 203 68 71 chr13 16703106 16703342 -103041556 + L1ME LINE L1 4571 4806 -1360 1881 133 9 59 chr13 16703342 16703666 -103041232 + AluJb SINE Alu 1 308 -4 2367 203 68 71 chr13 16703666 16703797 -103041101 + L1ME LINE L1 4806 4936 -1230 1722 155 20 30 chr13 16703797 16704101 -103040797 - AluSx SINE Alu -11 301 1 2367 203 68 71 chr13 16704101 16704113 -103040785 + L1ME LINE L1 4936 4947 -1219 2093 113 17 0 chr13 16704113 16704404 -103040494 - AluSx SINE Alu -16 296 1 2367 203 68 71 chr13 16704404 16704435 -103040463 + L1ME LINE L1 4947 4977 -1189 2245 87 0 14 chr13 16704435 16704749 -103040149 - AluSq SINE Alu 0 310 1 2367 203 68 71 chr13 16704749 16705266 -103039632 + L1ME LINE L1 4977 5490 -676 2159 104 0 29 chr13 16705266 16705399 -103039499 + AluSc SINE Alu 1 136 -173 1815 119 87 0 chr13 16705399 16705676 -103039222 + AluSg SINE Alu 1 301 -9 2159 104 0 29 chr13 16705676 16705851 -103039047 + AluSc SINE Alu 136 300 -9 482 174 56 18 chr13 16705860 16705988 -103038910 + L1ME LINE L1 5676 5813 -371 * 532 233 31 74 chr13 16705986 16706047 -103038851 - L1M4 LINE L1 -2474 3672 3610 2111 113 25 0 chr13 16706047 16706330 -103038568 - AluSx SINE Alu -22 290 1 532 233 31 74 chr13 16706330 16706499 -103038399 - L1M4 LINE L1 -2536 3610 3455 278 256 149 18 chr13 16706589 16706703 -103038195 + MLT1K LTR MaLR 87 230 -358 1767 172 7 0 chr13 16706856 16707146 -103037752 - AluJb SINE Alu -20 292 1 3137 168 99 80 chr13 16707146 16707241 -103037657 - L1MDa LINE L1 -4577 1963 1871 2476 74 3 0 chr13 16707241 16707539 -103037359 - AluSg SINE Alu -11 299 1 3137 168 99 80 chr13 16707539 16707818 -103037080 - L1MDa LINE L1 -4669 1871 1599 432 0 0 0 chr13 16707818 16707866 -103037032 + (TA)n Simple_repeat Simple_repeat 2 49 0 2011 104 0 0 chr13 16707867 16708127 -103036771 - AluSg SINE Alu -16 294 35 3137 168 99 80 chr13 16708127 16708299 -103036599 - L1MDa LINE L1 -4941 1599 1432 2324 99 0 0 chr13 16708299 16708593 -103036305 - AluSc SINE Alu -15 294 1 3137 168 99 80 chr13 16708593 16708614 -103036284 - L1MDa LINE L1 -5108 1432 1413 2102 124 0 13 chr13 16708614 16708912 -103035986 - AluSx SINE Alu -18 294 1 3137 168 99 80 chr13 16708912 16709339 -103035559 - L1MDa LINE L1 -5127 1413 945 380 71 18 0 chr13 16709704 16709760 -103035138 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 212 328 0 0 chr13 16709760 16709821 -103035077 - L2 LINE L2 -9 3263 3203 266 186 29 0 chr13 16709985 16710055 -103034843 + GA-rich Low_complexity Low_complexity 3 74 0 2022 162 154 0 chr13 16711172 16711543 -103033355 - MSTA LTR MaLR 0 428 1 364 153 0 71 chr13 16711543 16711628 -103033270 - MSTA-int LTR MaLR 0 1580 1502 2252 88 0 10 chr13 16711628 16711935 -103032963 - AluY SINE Alu -7 304 1 2625 43 0 7 chr13 16712102 16712404 -103032494 - AluY SINE Alu -11 300 1 324 0 0 0 chr13 16713130 16713166 -103031732 + (CA)n Simple_repeat Simple_repeat 2 37 0 769 196 0 14 chr13 16713186 16713505 -103031393 + FLAM_C SINE Alu 3 319 0 334 302 100 4 chr13 16713336 16713530 -103031368 + HAL1 LINE L1 1105 3200 -1203 * 348 153 0 112 chr13 16714866 16714964 -103029934 + L1ME4a LINE L1 6035 6121 0 1313 176 179 3 chr13 16714970 16715266 -103029632 + MER7A DNA MER2_type 1 346 0 1136 191 120 32 chr13 16715343 16715684 -103029214 + MLT1A2 LTR MaLR 2 372 -2 536 197 0 16 chr13 16716100 16716227 -103028671 + FLAM_A SINE Alu 17 141 -1 1218 151 82 0 chr13 16716360 16716592 -103028306 + LTR23 LTR ERV1 2 252 -185 411 178 0 0 chr13 16716604 16716677 -103028221 + FLAM SINE Alu 46 118 -15 892 91 57 62 chr13 16716683 16716823 -103028075 + LTR23 LTR ERV1 245 385 -52 1962 132 0 55 chr13 16716823 16717149 -103027749 - AluSx SINE Alu -4 308 1 892 91 57 62 chr13 16717149 16717184 -103027714 + LTR23 LTR ERV1 385 419 -18 1879 82 71 0 chr13 16717185 16717467 -103027431 - AluSx SINE Alu 0 311 12 251 373 8 0 chr13 16718427 16718553 -103026345 - Charlie1 DNA MER1_type -2 2759 2633 1373 186 12 0 chr13 16718554 16718807 -103026091 + AluJo SINE Alu 41 296 -16 1540 156 62 28 chr13 16718885 16719069 -103025829 - AluJb SINE Alu -13 299 100 2217 98 21 0 chr13 16719069 16719355 -103025543 + AluY SINE Alu 1 292 -19 1540 156 62 28 chr13 16719355 16719459 -103025439 - AluJb SINE Alu -212 100 1 1034 276 60 10 chr13 16719462 16719860 -103025038 - LTR33 LTR ERVL -94 427 10 27 0 0 0 chr13 16720209 16720236 -103024662 + AT_rich Low_complexity Low_complexity 1 27 0 2158 136 3 0 chr13 16721718 16722020 -103022878 + AluSx SINE Alu 1 303 -9 1964 127 99 0 chr13 16723108 16723392 -103021506 - AluSx SINE Alu 0 312 1 1690 185 12 0 chr13 16723473 16723727 -103021171 - AluSx SINE Alu -55 257 1 396 171 14 0 chr13 16723730 16723800 -103021098 - AluJ/FRAM SINE Alu -5 297 227 2111 128 3 0 chr13 16723825 16724122 -103020776 + AluSx SINE Alu 5 302 -10 413 273 101 22 chr13 16724122 16724261 -103020637 - MER58A DNA MER1_type -33 191 42 2345 66 0 14 chr13 16724582 16724897 -103020001 - AluY SINE Alu 0 311 1 1554 176 54 7 chr13 16724897 16725176 -103019722 - AluJb SINE Alu -17 295 4 590 160 0 0 chr13 16725431 16725531 -103019367 + AluJ/FLAM SINE Alu 2 101 -211 21 0 0 0 chr13 16726799 16726820 -103018078 + AT_rich Low_complexity Low_complexity 1 21 0 488 234 64 28 chr13 16728081 16728222 -103016676 + LTR42 LTR ERVL 1 146 -349 495 152 0 0 chr13 16728222 16728301 -103016597 + AluJb SINE Alu 210 288 -24 244 131 82 0 chr13 16728312 16728373 -103016525 + T-rich Low_complexity Low_complexity 4 69 0 204 288 0 0 chr13 16730485 16730558 -103014340 + T-rich Low_complexity Low_complexity 1 73 0 205 111 74 0 chr13 16730564 16730618 -103014280 + (TA)n Simple_repeat Simple_repeat 1 58 0 2107 120 0 0 chr13 16730618 16730892 -103014006 - AluSx SINE Alu -26 286 13 1279 167 94 45 chr13 16730913 16731201 -103013697 - AluJo SINE Alu -10 302 1 2092 139 7 0 chr13 16731207 16731508 -103013390 - AluSx SINE Alu -9 303 1 799 199 165 79 chr13 16731518 16731784 -103013114 - AluJo SINE Alu -12 290 2 1248 296 60 46 chr13 16731788 16731858 -103013040 - L1MC4 LINE L1 0 8042 7974 1788 195 10 3 chr13 16731858 16732156 -103012742 + AluJo SINE Alu 7 306 -6 1248 296 60 46 chr13 16732156 16732802 -103012096 - L1MC4 LINE L1 -68 7974 7316 1705 186 28 3 chr13 16732825 16733116 -103011782 + AluSx SINE Alu 1 298 -14 1145 184 87 5 chr13 16733128 16733335 -103011563 + AluJo SINE Alu 88 311 -1 711 200 0 0 chr13 16733338 16733468 -103011430 - AluJo/FLAM SINE Alu -172 130 1 659 256 45 76 chr13 16733469 16733758 -103011140 - L1MC4 LINE L1 -823 7219 6940 2335 111 3 0 chr13 16733952 16734259 -103010639 + AluSx SINE Alu 5 312 0 1941 130 23 27 chr13 16735128 16735275 -103009623 - AluSx SINE Alu -12 300 154 5738 136 27 32 chr13 16735275 16736352 -103008546 + MER11C LTR ERVK 1 1071 0 1941 130 23 27 chr13 16736352 16736505 -103008393 - AluSx SINE Alu -158 154 1 760 118 30 7 chr13 16736528 16736663 -103008235 - L1MB2 LINE L1 -4 6167 6030 663 148 0 33 chr13 16736685 16736807 -103008091 + FLAM_C SINE Alu 16 133 -10 1152 193 23 42 chr13 16736825 16737090 -103007808 - L1MB2 LINE L1 -188 5995 5736 1624 197 38 0 chr13 16737090 16737380 -103007518 - AluJo SINE Alu -8 304 4 1098 256 37 8 chr13 16737384 16737735 -103007163 - L1MB2 LINE L1 -941 5205 4845 240 258 62 31 chr13 16738804 16738901 -103005997 + MER5A DNA MER1_type 8 107 -82 2157 141 0 0 chr13 16742358 16742656 -103002242 - AluSx SINE Alu -9 303 6 1862 167 0 13 chr13 16742727 16743027 -103001871 + AluJo SINE Alu 1 296 -16 1507 216 7 7 chr13 16743602 16743894 -103001004 - AluJo SINE Alu -18 294 3 268 308 10 0 chr13 16744911 16745015 -102999883 + MIR SINE MIR 61 165 -97 467 179 109 98 chr13 16750104 16750193 -102994705 - L1MB8 LINE L1 -37 6141 6054 1908 162 20 0 chr13 16750193 16750489 -102994409 - AluSx SINE Alu -8 304 3 467 179 109 98 chr13 16750489 16750583 -102994315 - L1MB8 LINE L1 -124 6054 5956 1601 233 55 37 chr13 16750583 16751072 -102993826 + MLT1D LTR MaLR 1 498 -7 1897 212 41 91 chr13 16751078 16752017 -102992881 + MLT1D-int LTR MaLR 2 875 -496 3010 169 58 37 chr13 16752194 16752234 -102992664 - L1MB8 LINE L1 -205 5973 5935 2103 134 3 0 chr13 16752234 16752532 -102992366 - AluSg SINE Alu -11 299 1 3010 169 58 37 chr13 16752532 16752939 -102991959 - L1MB8 LINE L1 -243 5935 5538 1606 166 68 7 chr13 16752939 16753217 -102991681 + AluSx SINE Alu 2 296 -16 3010 169 58 37 chr13 16753217 16753739 -102991159 - L1MB8 LINE L1 -640 5538 4981 2218 111 0 20 chr13 16753881 16754178 -102990720 + AluSg SINE Alu 5 295 -15 472 157 0 0 chr13 16754613 16754696 -102990202 + FLAM_C SINE Alu 61 143 0 1219 180 28 14 chr13 16755179 16755396 -102989502 - AluJo SINE Alu -11 301 82 2612 47 0 7 chr13 16755737 16756036 -102988862 - AluY SINE Alu -14 297 1 1787 156 10 34 chr13 16756101 16756396 -102988502 + AluJb SINE Alu 1 288 -24 1678 153 17 27 chr13 16756428 16756728 -102988170 + AluJo SINE Alu 14 310 -2 416 131 0 0 chr13 16756821 16756882 -102988016 - U6 snRNA snRNA -46 61 1 266 298 63 63 chr13 16757183 16757499 -102987399 + L2 LINE L2 1695 2010 -1304 800 249 139 79 chr13 16757623 16757685 -102987213 - L2 LINE L2 0 3313 3256 708 190 0 29 chr13 16757685 16757822 -102987076 + FLAM_C SINE Alu 1 133 0 800 249 139 79 chr13 16757822 16758021 -102986877 - L2 LINE L2 -57 3256 3070 1143 209 129 0 chr13 16758021 16758284 -102986614 - AluJo SINE Alu -5 297 1 1715 183 3 29 chr13 16758285 16758591 -102986307 - AluJo SINE Alu -14 298 1 800 249 139 79 chr13 16758591 16758807 -102986091 - L2 LINE L2 -242 3071 2804 681 291 25 42 chr13 16759292 16759577 -102985321 - L2 LINE L2 -757 2557 2278 457 154 0 0 chr13 16759744 16759822 -102985076 - MADE1 DNA Mariner 0 80 3 1796 174 14 0 chr13 16760761 16761054 -102983844 + AluJb SINE Alu 1 297 -15 2165 124 17 3 chr13 16761058 16761357 -102983541 + AluSq SINE Alu 1 303 -10 2278 116 0 16 chr13 16762523 16762834 -102982064 + AluSx SINE Alu 1 306 -6 327 179 43 0 chr13 16762834 16762974 -102981924 + (TA)n Simple_repeat Simple_repeat 1 146 0 2190 114 0 0 chr13 16763403 16763684 -102981214 - AluSx SINE Alu -15 297 17 1711 164 32 0 chr13 16764405 16764685 -102980213 + AluJo SINE Alu 1 289 -23 852 187 94 0 chr13 16764767 16764938 -102979960 - MER5A DNA MER1_type 0 189 3 400 236 162 42 chr13 16765184 16765234 -102979664 + L1MC5 LINE L1 7609 7652 -309 1846 155 7 0 chr13 16765234 16765505 -102979393 + AluSx SINE Alu 6 278 -34 400 236 162 42 chr13 16765505 16765645 -102979253 + L1MC5 LINE L1 7652 7822 -139 1136 147 17 6 chr13 16765646 16765823 -102979075 + AluSg/x SINE Alu 127 305 -7 1595 223 0 0 chr13 16765829 16766120 -102978778 + AluJb SINE Alu 3 293 -19 2151 116 10 3 chr13 16766174 16766466 -102978432 + AluSq SINE Alu 1 294 -19 2027 161 0 3 chr13 16766508 16766813 -102978085 - AluSx SINE Alu -8 304 1 330 332 212 12 chr13 16766865 16767124 -102977774 - L3 LINE CR1 -72 1505 1195 2069 161 0 0 chr13 16767578 16767883 -102977015 + AluJo SINE Alu 1 305 -7 24 0 0 0 chr13 16768861 16768885 -102976013 + AT_rich Low_complexity Low_complexity 1 24 0 635 280 104 45 chr13 16769053 16769389 -102975509 + L2 LINE L2 2077 2432 -882 1675 153 15 70 chr13 16769489 16769816 -102975082 + AluJb SINE Alu 1 309 -3 291 347 66 33 chr13 16769853 16770066 -102974832 - L2 LINE L2 -67 3205 2986 1841 164 20 0 chr13 16770374 16770666 -102974232 - AluJo SINE Alu -14 298 1 21 0 0 0 chr13 16771540 16771561 -102973337 + AT_rich Low_complexity Low_complexity 1 21 0 646 151 0 0 chr13 16772133 16772226 -102972672 + AluJ/FLAM SINE Alu 2 94 -218 303 261 0 0 chr13 16772253 16772318 -102972580 - L1MC4 LINE L1 -1338 6704 6640 1921 164 0 3 chr13 16772321 16772613 -102972285 - AluSx SINE Alu -21 291 1 928 169 48 6 chr13 16772629 16772795 -102972103 + FRAM SINE Alu 1 165 -11 512 243 55 81 chr13 16774711 16775384 -102969514 + HSREP522 Satellite telomeric 1 655 -203 1076 86 0 0 chr13 16776652 16776791 -102968107 - MER85 DNA T2_type 0 139 1 1999 112 4 0 chr13 16776981 16777248 -102967650 - AluSp SINE Alu -45 268 1 1990 154 0 3 chr13 16777350 16777648 -102967250 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 16777770 16777792 -102967106 + AT_rich Low_complexity Low_complexity 1 22 0 1558 180 23 4 chr13 16778221 16778482 -102966416 - AluJb SINE Alu -44 268 3 983 42 8 8 chr13 16778517 16778635 -102966263 + AluYb8 SINE Alu 2 119 -199 612 147 0 0 chr13 16778637 16778746 -102966152 - L1 LINE L1 -1399 4747 4639 1000 103 23 34 chr13 16779159 16779334 -102965564 - LTR8-int LTR ERV1 -6261 337 165 685 183 4 22 chr13 16779332 16779567 -102965331 + MER4-int LTR ERV1 307 579 -6019 * 862 147 96 48 chr13 16779574 16779923 -102964975 + MER4-int LTR ERV1 503 786 -4229 * 3777 116 84 30 chr13 16779891 16780132 -102964766 + MER4-int LTR ERV1 1776 2002 -4596 2688 167 51 93 chr13 16780132 16780294 -102964604 - LTR8 LTR ERV1 -1 690 523 2051 153 0 0 chr13 16780294 16780595 -102964303 - AluY SINE Alu -10 301 1 2688 167 51 93 chr13 16780595 16781152 -102963746 - LTR8 LTR ERV1 -168 523 1 3777 116 84 30 chr13 16781152 16781684 -102963214 + MER4-int LTR ERV1 2002 2591 -4007 37456 56 30 42 chr13 16782959 16788418 -102956480 + L1P LINE L1 2 5391 -755 275 194 32 0 chr13 16789460 16789522 -102955376 - MER53 DNA DNA -125 64 1 322 156 38 31 chr13 16789693 16789853 -102955045 + (TG)n Simple_repeat Simple_repeat 1 161 0 220 198 146 23 chr13 16790017 16790131 -102954767 + MIR SINE MIR 55 184 -65 453 228 0 0 chr13 16790288 16790380 -102954518 - 5S rRNA rRNA -28 93 2 301 274 68 72 chr13 16791447 16791710 -102953188 - L1MEd LINE L1 -4963 1156 895 2055 146 3 10 chr13 16791727 16792035 -102952863 - AluSx SINE Alu -6 306 1 1684 174 3 49 chr13 16794233 16794537 -102950361 + AluJo SINE Alu 17 306 -6 422 330 48 35 chr13 16795534 16795764 -102949134 + L1MC4a LINE L1 5342 5574 -2234 261 236 24 79 chr13 16795910 16796037 -102948861 + L1MC4a LINE L1 5819 5938 -1870 1695 192 0 14 chr13 16796253 16796545 -102948353 + AluJo SINE Alu 6 293 -19 763 120 0 0 chr13 16796631 16796731 -102948167 - AluSp/q SINE Alu -19 294 195 4972 194 125 45 chr13 16797032 16797715 -102947183 + L1MCa LINE L1 807 1433 -4993 2088 126 20 0 chr13 16797715 16798016 -102946882 + AluSg SINE Alu 4 310 0 4972 194 125 45 chr13 16798016 16799206 -102945692 + L1MCa LINE L1 1433 3890 -2536 341 174 87 0 chr13 16799209 16799278 -102945620 + L1MCa LINE L1 3921 3995 -2431 4256 229 68 29 chr13 16799430 16799631 -102945267 - L1M4 LINE L1 -496 5678 5486 1986 155 0 0 chr13 16799631 16799928 -102944970 + AluSx SINE Alu 2 298 -14 4256 229 68 29 chr13 16799928 16801026 -102943872 - L1M4 LINE L1 -688 5486 4285 2081 127 14 0 chr13 16801026 16801318 -102943580 - AluY SINE Alu -15 296 1 4256 229 68 29 chr13 16801318 16801765 -102943133 - L1M4 LINE L1 -1889 4285 3857 2020 246 29 9 chr13 16802024 16802578 -102942320 - L1M4 LINE L1 -2293 3853 3289 1853 143 7 20 chr13 16802747 16803047 -102941851 - AluSx SINE Alu -16 296 1 1858 159 41 9 chr13 16806279 16806624 -102938274 - MLT1A1 LTR MaLR 0 365 10 207 100 0 0 chr13 16806632 16806662 -102938236 + (TG)n Simple_repeat Simple_repeat 1 30 0 222 175 95 16 chr13 16807535 16807598 -102937300 + MIR SINE MIR 79 146 -62 342 158 26 66 chr13 16808899 16808975 -102935923 - MIR SINE MIR -140 122 50 233 286 0 0 chr13 16809545 16809594 -102935304 + (TG)n Simple_repeat Simple_repeat 1 49 0 240 326 0 0 chr13 16811552 16811638 -102933260 - MIR SINE MIR -19 243 158 676 312 111 37 chr13 16811790 16811943 -102932955 - L1MC5 LINE L1 -31 7930 7790 1967 163 0 0 chr13 16811943 16812244 -102932654 + AluSx SINE Alu 1 301 -11 676 312 111 37 chr13 16812244 16812687 -102932211 - L1MC5 LINE L1 -171 7790 7290 234 216 127 94 chr13 16812847 16813028 -102931870 - L1MC5 LINE L1 -781 7180 6994 454 226 57 8 chr13 16813051 16813175 -102931723 - MER53 DNA DNA -59 130 1 244 282 11 39 chr13 16814160 16814341 -102930557 + (CA)n Simple_repeat Simple_repeat 1 176 0 251 330 41 10 chr13 16817506 16817603 -102927295 + MIR3 SINE MIR 66 165 -43 255 260 115 19 chr13 16818599 16818703 -102926195 + MIR SINE MIR 29 142 -120 1412 212 32 39 chr13 16819013 16819493 -102925405 + MLT2A2 LTR ERVL 65 552 -2 822 306 101 8 chr13 16819493 16819849 -102925049 - L2 LINE L2 -1732 1582 1194 26 30 0 0 chr13 16819860 16819893 -102925005 + AT_rich Low_complexity Low_complexity 1 33 0 2896 168 28 6 chr13 16819897 16820426 -102924472 - L1MC1 LINE L1 -257 6076 5536 423 204 0 32 chr13 16821616 16821709 -102923189 + L2 LINE L2 2665 2754 -560 339 275 79 85 chr13 16821725 16822193 -102922705 - MLT1G1 LTR MaLR -8 541 79 2423 57 6 50 chr13 16822193 16822511 -102922387 - AluY SINE Alu -7 304 1 339 275 79 85 chr13 16822511 16822585 -102922313 - MLT1G1 LTR MaLR -470 79 6 561 257 31 123 chr13 16822591 16822848 -102922050 + L2 LINE L2 2756 2976 -337 1773 140 21 14 chr13 16822848 16823133 -102921765 - AluSx SINE Alu -14 298 12 561 257 31 123 chr13 16823133 16823218 -102921680 + L2 LINE L2 2976 3067 -246 497 321 7 0 chr13 16823511 16823651 -102921247 - L2 LINE L2 -940 2374 2234 1274 165 27 9 chr13 16823656 16823880 -102921018 - MLT1E1 LTR MaLR -1 653 426 620 245 22 0 chr13 16823880 16824019 -102920879 - HERV16 LTR ERVL -4385 611 470 630 221 28 7 chr13 16824115 16824260 -102920638 - HERV16 LTR ERVL -4539 457 310 670 276 56 5 chr13 16824367 16824563 -102920335 - LTR16A LTR ERVL -179 271 66 1438 231 120 74 chr13 16824714 16825083 -102919815 - L1ME3A LINE L1 -31 6139 5730 397 21 0 0 chr13 16825083 16825131 -102919767 + L1PA4 LINE L1 6108 6155 0 1438 231 120 74 chr13 16825131 16825359 -102919539 - L1ME3A LINE L1 -440 5730 5514 943 231 114 108 chr13 16825904 16826925 -102917973 - L1MC5 LINE L1 -901 6907 5853 271 185 9 9 chr13 16827186 16827294 -102917604 + (GAATG)n Satellite Satellite 2 109 0 877 115 6 6 chr13 16827317 16827482 -102917416 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chr13 16827500 16827540 -102917358 + (GAATG)n Satellite Satellite 1 40 0 684 202 0 0 chr13 16827565 16827899 -102916999 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chr13 16827946 16828253 -102916645 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chr13 16828265 16828443 -102916455 + (GAATG)n Satellite Satellite 3 180 0 697 177 2 2 chr13 16828456 16828962 -102915936 + (GAATG)n Satellite Satellite 1 506 0 727 174 0 28 chr13 16829016 16829541 -102915357 + (GAATG)n Satellite Satellite 1 510 0 852 149 0 0 chr13 16829552 16829910 -102914988 + (GAATG)n Satellite Satellite 1 358 0 705 171 0 0 chr13 16829976 16830151 -102914747 + (GAATG)n Satellite Satellite 2 176 0 752 171 8 9 chr13 16830210 16830860 -102914038 + (GAATG)n Satellite Satellite 1 649 0 924 127 0 0 chr13 16830883 16831048 -102913850 + (GAATG)n Satellite Satellite 4 168 0 807 107 0 41 chr13 16832199 16832321 -102912577 + AluSg/x SINE Alu 175 291 -19 2196 129 0 0 chr13 16832332 16832635 -102912263 + AluSx SINE Alu 1 303 -9 927 107 0 0 chr13 16832982 16833103 -102911795 + AluSq/x SINE Alu 1 121 -191 2254 91 0 14 chr13 16833543 16833839 -102911059 - AluY SINE Alu -19 292 1 23 0 0 0 chr13 16833887 16833910 -102910988 + AT_rich Low_complexity Low_complexity 1 23 0 1951 106 6 91 chr13 16834507 16834836 -102910062 + AluSx SINE Alu 1 301 -11 360 279 93 29 chr13 16835303 16835507 -102909391 - L1ME4a LINE L1 -260 5861 5645 27 29 0 0 chr13 16835822 16835856 -102909042 + AT_rich Low_complexity Low_complexity 1 34 0 2018 242 93 16 chr13 16836552 16836909 -102907989 - L1MA9 LINE L1 -25 6287 5959 342 0 0 0 chr13 16836909 16836947 -102907951 + (TG)n Simple_repeat Simple_repeat 1 38 0 2018 242 93 16 chr13 16836947 16837204 -102907694 - L1MA9 LINE L1 -353 5959 5626 214 296 12 37 chr13 16837619 16837700 -102907198 + L2 LINE L2 3172 3250 -63 647 116 187 13 chr13 16838255 16838410 -102906488 - L1MA9 LINE L1 0 6312 6131 1896 150 14 0 chr13 16838415 16838708 -102906190 + AluSx SINE Alu 1 297 -15 237 175 198 63 chr13 16838734 16838860 -102906038 + HAL1 LINE L1 836 978 -1529 2120 148 0 0 chr13 16838911 16839216 -102905682 + AluSx SINE Alu 1 305 -7 701 183 22 29 chr13 16839279 16839416 -102905482 - MER68 LTR ERV1 0 562 427 903 176 50 5 chr13 16839594 16839797 -102905101 + MLT1D LTR MaLR 227 423 -82 2179 118 7 3 chr13 16840837 16841142 -102903756 - AluSg SINE Alu -4 306 1 278 287 134 30 chr13 16841506 16841670 -102903228 + MIR SINE MIR 81 261 -1 4371 114 16 41 chr13 16843036 16843434 -102901464 + Tigger1 DNA MER2_type 1064 1471 -947 1376 196 17 33 chr13 16843434 16843735 -102901163 - AluJo SINE Alu -16 296 1 4371 114 16 41 chr13 16843735 16843769 -102901129 + Tigger1 DNA MER2_type 1471 1504 -914 2308 98 0 3 chr13 16843769 16844065 -102900833 + AluY SINE Alu 1 295 -16 4371 114 16 41 chr13 16844065 16844334 -102900564 + Tigger1 DNA MER2_type 1504 1748 -670 2067 120 3 0 chr13 16844411 16844694 -102900204 + AluSp SINE Alu 19 302 -11 1779 157 23 0 chr13 16844694 16844993 -102899905 + Tigger1 DNA MER2_type 1739 2044 -374 435 223 54 9 chr13 16844991 16845103 -102899795 + Tigger1 DNA MER2_type 2302 2418 0 * 927 239 127 14 chr13 16845748 16846032 -102898866 - MER33 DNA MER1_type -1 323 8 1527 193 24 20 chr13 16846152 16846447 -102898451 - AluJo SINE Alu -16 296 1 452 201 27 121 chr13 16848326 16848475 -102896423 - L1MB7 LINE L1 -9 6175 6041 1719 214 79 46 chr13 16848535 16848991 -102895907 - L1MB7 LINE L1 -294 5884 5397 1682 167 3 17 chr13 16848991 16849279 -102895619 - AluJb SINE Alu -7 305 22 1719 214 79 46 chr13 16849279 16849462 -102895436 - L1MB7 LINE L1 -781 5397 5222 1011 308 173 35 chr13 16849540 16850492 -102894406 + L2 LINE L2 1852 2935 -379 342 215 0 0 chr13 16850711 16850790 -102894108 + C-rich Low_complexity Low_complexity 3 81 0 1791 167 24 0 chr13 16850790 16851084 -102893814 - AluSg SINE Alu -9 301 1 4610 193 37 35 chr13 16852170 16853951 -102890947 - L1MB3 LINE L1 -2 6181 4398 2223 135 21 52 chr13 16856381 16856962 -102887936 - MER4A LTR ERV1 0 664 34 549 261 151 13 chr13 16857384 16857695 -102887203 - Charlie7 DNA MER1_type -262 2350 1997 399 170 2 17 chr13 16857696 16857785 -102887113 - L1MA6 LINE L1 -17 6283 6196 245 287 205 23 chr13 16858365 16858550 -102886348 - MIR SINE MIR -25 237 23 303 210 0 0 chr13 16858591 16858653 -102886245 + L1MC4 LINE L1 6642 6703 -1339 301 200 0 0 chr13 16858700 16858760 -102886138 - L1MC4 LINE L1 -1341 6701 6642 1090 195 191 24 chr13 16858760 16859006 -102885892 + AluJo SINE Alu 1 287 -15 7544 94 21 21 chr13 16859516 16860523 -102884375 - LTR13 LTR ERVK 0 1007 1 965 190 124 13 chr13 16862317 16862543 -102882355 - L1MB2 LINE L1 0 6171 5921 373 283 61 11 chr13 16862803 16862983 -102881915 - L1M4 LINE L1 -919 5227 5039 510 251 57 28 chr13 16862986 16863233 -102881665 - Charlie5 DNA MER1_type -27 2585 2332 1028 247 80 37 chr13 16863273 16863710 -102881188 - L1M4 LINE L1 -1113 5033 4578 188 200 150 50 chr13 16865737 16865817 -102879081 - MIR SINE MIR -75 133 46 27732 129 32 20 chr13 16866027 16866590 -102878308 + L1P3 LINE L1 689 1244 -5243 291 71 0 0 chr13 16866590 16866632 -102878266 + (CAA)n Simple_repeat Simple_repeat 1 42 0 27732 129 32 20 chr13 16866632 16871124 -102873774 + L1P3 LINE L1 1244 5810 -677 228 216 39 0 chr13 16871124 16871175 -102873723 - L1MA6 LINE L1 -128 6172 6120 192 340 118 7 chr13 16871251 16871395 -102873503 + L2 LINE L2 799 958 -2356 292 146 0 0 chr13 16871398 16871446 -102873452 - Alu SINE Alu -7 295 248 5411 104 8 1 chr13 16871446 16872177 -102872721 + THE1B-int LTR MaLR 845 1580 0 2275 105 21 43 chr13 16872177 16872412 -102872486 + THE1B LTR MaLR 1 227 -137 2349 81 0 7 chr13 16872412 16872721 -102872177 + AluY SINE Alu 1 307 -4 2275 105 21 43 chr13 16872721 16872857 -102872041 + THE1B LTR MaLR 227 364 0 222 213 107 40 chr13 16872867 16872942 -102871956 - MIR SINE MIR -119 143 64 255 301 7 7 chr13 16873222 16873315 -102871583 + CT-rich Low_complexity Low_complexity 1 93 0 1567 171 0 18 chr13 16873315 16873596 -102871302 - AluJb SINE Alu -36 276 1 1410 193 76 6 chr13 16873913 16874229 -102870669 - MER44D DNA MER2_type 0 609 2 356 330 85 23 chr13 16874239 16874415 -102870483 + L2 LINE L2 3126 3312 -1 1306 193 64 0 chr13 16874636 16874901 -102869997 - AluJo SINE Alu -30 282 1 202 263 34 17 chr13 16876958 16877076 -102867822 + (TCTG)n Simple_repeat Simple_repeat 1 120 0 357 82 0 0 chr13 16880375 16880424 -102864474 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 269 254 55 12 chr13 16881292 16881457 -102863441 + (TCTG)n Simple_repeat Simple_repeat 1 172 0 360 295 13 36 chr13 16881511 16881768 -102863130 - L1M LINE L1 -786 5360 5116 1774 191 23 22 chr13 16882649 16883023 -102861875 + MLT2C1 LTR ERVL 1 444 -20 268 295 27 36 chr13 16883024 16883136 -102861762 + (TCTCTG)n Simple_repeat Simple_repeat 4 114 0 535 338 102 3 chr13 16883223 16883507 -102861391 + L2 LINE L2 2828 3139 -174 216 0 0 0 chr13 16883526 16883550 -102861348 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 770 191 0 0 chr13 16883550 16883676 -102861222 - AluSx SINE Alu -50 260 135 234 0 0 0 chr13 16883676 16883702 -102861196 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 39838 76 9 2 chr13 16883702 16889781 -102855117 - L1PA5 LINE L1 -11 6143 18 849 134 0 0 chr13 16889782 16889909 -102854989 - AluSx SINE Alu -178 135 9 392 255 85 9 chr13 16889934 16890040 -102854858 + L2 LINE L2 3136 3249 -23 414 299 0 0 chr13 16890911 16891018 -102853880 - Charlie8 DNA MER1_type -2142 275 169 356 286 71 48 chr13 16891074 16891242 -102853656 - MIR3 SINE MIR -17 191 20 270 0 0 0 chr13 16892381 16892411 -102852487 + (TG)n Simple_repeat Simple_repeat 2 31 0 231 123 18 35 chr13 16892448 16892505 -102852393 + LTR66 LTR ERVL 404 459 -151 188 67 33 0 chr13 16892531 16892561 -102852337 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 311 155 0 14 chr13 16892577 16892648 -102852250 + CT-rich Low_complexity Low_complexity 3 72 0 260 328 16 0 chr13 16892655 16892780 -102852118 + (TCCA)n Simple_repeat Simple_repeat 2 128 0 467 134 12 0 chr13 16892796 16892878 -102852020 + CT-rich Low_complexity Low_complexity 2 84 0 187 315 96 14 chr13 16892880 16892953 -102851945 - L2 LINE L2 -1 3271 3193 1169 232 89 17 chr13 16893086 16893388 -102851510 + MLT1J1 LTR MaLR 20 343 -103 375 311 68 114 chr13 16893737 16894175 -102850723 - L2 LINE L2 -4 3268 2851 349 265 26 30 chr13 16894350 16894482 -102850416 - MIR SINE MIR -32 176 47 228 235 0 0 chr13 16894651 16894719 -102850179 + (TG)n Simple_repeat Simple_repeat 2 69 0 276 265 0 0 chr13 16894930 16895032 -102849866 + (CA)n Simple_repeat Simple_repeat 1 102 0 288 0 0 0 chr13 16895368 16895400 -102849498 + (TG)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr13 16895402 16895423 -102849475 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 94 0 0 chr13 16895835 16895867 -102849031 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 3694 106 0 6 chr13 16895947 16896458 -102848440 - MER9 LTR ERVK -3 508 1 1098 155 27 27 chr13 16897037 16897256 -102847642 + AluJo SINE Alu 86 304 -8 504 301 38 10 chr13 16897290 16897499 -102847399 + L1ME4a LINE L1 5681 5895 -226 400 288 28 34 chr13 16897567 16897744 -102847154 + L1ME4a LINE L1 5887 6062 -59 1053 179 0 72 chr13 16897791 16898014 -102846884 - AluJo SINE Alu -22 290 84 363 274 21 0 chr13 16898572 16898667 -102846231 + MER58 DNA MER1_type 171 267 -74 416 323 37 6 chr13 16898707 16898871 -102846027 + L2 LINE L2 3144 3312 -1 356 230 10 20 chr13 16899188 16899288 -102845610 + HAL1b LINE L1 84 182 -1166 327 296 9 9 chr13 16899356 16899471 -102845427 + HAL1b LINE L1 283 397 -951 4648 180 84 12 chr13 16899943 16901374 -102843524 - L1MA10 LINE L1 0 6334 4783 1679 136 6 114 chr13 16901743 16901882 -102843016 + AluSx SINE Alu 5 89 -213 1880 149 7 0 chr13 16901882 16902184 -102842714 + AluSx SINE Alu 1 304 -8 1679 136 6 114 chr13 16902184 16902376 -102842522 + AluSx SINE Alu 89 300 -2 2289 136 86 5 chr13 16903282 16903678 -102841220 + MSTA LTR MaLR 1 428 0 1232 156 6 147 chr13 16904919 16905265 -102839633 + AluSx SINE Alu 1 297 -5 1141 162 52 17 chr13 16905554 16905899 -102838999 + Tigger1 DNA MER2_type 1 2410 -8 609 293 143 43 chr13 16906494 16907010 -102837888 + L1MC4a LINE L1 4587 5154 -992 705 285 123 18 chr13 16907075 16907521 -102837377 + L1MC4a LINE L1 5449 5941 -1867 384 242 84 67 chr13 16910050 16910348 -102834550 - L1MC5 LINE L1 -175 7786 7484 211 309 41 10 chr13 16910540 16910637 -102834261 + MIR3 SINE MIR 66 165 -43 270 111 111 63 chr13 16911686 16911749 -102833149 + MIR3 SINE MIR 90 155 -53 603 229 0 0 chr13 16916321 16916491 -102828407 + (TGAA)n Simple_repeat Simple_repeat 4 173 0 * 769 185 11 0 chr13 16916454 16916632 -102828266 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 917 171 2 5 chr13 16916660 16917103 -102827795 + (TGGA)n Simple_repeat Simple_repeat 1 441 0 774 199 0 3 chr13 16917144 16917449 -102827449 + (TGGA)n Simple_repeat Simple_repeat 1 303 0 950 166 3 3 chr13 16917467 16917782 -102827116 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 185 127 27 64 chr13 16918714 16918824 -102826074 + (CA)n Simple_repeat Simple_repeat 1 106 0 432 246 26 9 chr13 16922466 16922580 -102822318 - MIR SINE MIR -115 147 32 262 289 125 0 chr13 16925214 16925318 -102819580 + MER5B DNA MER1_type 54 170 -8 222 276 0 88 chr13 16925811 16926003 -102818895 + G-rich Low_complexity Low_complexity 5 179 0 581 191 0 9 chr13 16926808 16926913 -102817985 + MLT1A2 LTR MaLR 271 374 0 262 114 0 0 chr13 16927804 16927839 -102817059 - U2 snRNA snRNA -153 35 1 272 345 42 42 chr13 16927915 16928083 -102816815 - MLT1K LTR MaLR -232 356 189 757 169 0 0 chr13 16928279 16928397 -102816501 - AluJb SINE Alu -5 307 190 1283 133 21 5 chr13 16928399 16930333 -102814565 + GSATX Satellite centromeric 1 1964 -66 241 244 0 0 chr13 16931544 16931589 -102813309 + MIR SINE MIR 51 95 -167 189 74 0 0 chr13 16931590 16931617 -102813281 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 188 311 33 16 chr13 16933924 16933985 -102810913 - L2 LINE L2 -69 3203 3142 2268 116 3 0 chr13 16934039 16934340 -102810558 - AluSg SINE Alu -8 302 1 679 123 53 18 chr13 16934413 16934527 -102810371 - FLAM_C SINE Alu -9 134 17 302 267 40 10 chr13 16934754 16934855 -102810043 + L2 LINE L2 3209 3312 -1 209 287 10 59 chr13 16935296 16935397 -102809501 - L2 LINE L2 -2660 654 559 26 50 0 0 chr13 16935871 16935911 -102808987 + AT_rich Low_complexity Low_complexity 1 40 0 984 199 23 14 chr13 16935913 16936134 -102808764 + AluJo SINE Alu 83 305 -7 348 322 127 39 chr13 16936214 16936546 -102808352 + L3 LINE CR1 307 667 -910 219 164 16 33 chr13 16936932 16936993 -102807905 + (TTTAA)n Simple_repeat Simple_repeat 4 63 0 36 23 0 0 chr13 16937103 16937146 -102807752 + AT_rich Low_complexity Low_complexity 1 43 0 314 301 12 0 chr13 16937147 16937230 -102807668 - L2 LINE L2 -3 3269 3186 525 16 0 0 chr13 16937444 16937506 -102807392 + (TG)n Simple_repeat Simple_repeat 2 63 0 860 241 0 0 chr13 16937523 16937689 -102807209 + MER2 DNA MER2_type 1 166 -179 2136 109 7 13 chr13 16938812 16939114 -102805784 + AluSx SINE Alu 1 300 -12 2203 110 7 7 chr13 16939936 16940244 -102804654 - MLT2A2 LTR ERVL -145 308 1 249 128 0 0 chr13 16940989 16941036 -102803862 + (TATG)n Simple_repeat Simple_repeat 2 48 0 503 338 85 52 chr13 16942884 16943496 -102801402 + L2 LINE L2 1729 2360 -954 214 216 134 62 chr13 16943940 16944037 -102800861 - MIR SINE MIR -15 247 144 1944 201 39 31 chr13 16944041 16944583 -102800315 + MLT2A2 LTR ERVL 1 554 0 193 269 301 0 chr13 16944589 16944682 -102800216 - MIR SINE MIR -122 140 20 2464 46 0 0 chr13 16944918 16945199 -102799699 - L1PA5 LINE L1 0 6154 5874 401 261 57 51 chr13 16945330 16945487 -102799411 + MLT1G1 LTR MaLR 430 587 -8 221 182 0 45 chr13 16945560 16945626 -102799272 + GA-rich Low_complexity Low_complexity 2 64 0 423 0 0 0 chr13 16945683 16945730 -102799168 + (CA)n Simple_repeat Simple_repeat 2 48 0 233 182 18 0 chr13 16945889 16945944 -102798954 + CT-rich Low_complexity Low_complexity 2 57 0 2524 173 29 0 chr13 16946135 16946551 -102798347 - MSTA LTR MaLR 0 428 1 620 363 28 15 chr13 16947168 16947493 -102797405 - LTR16A LTR ERVL -12 438 110 23 54 0 0 chr13 16947763 16947800 -102797098 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr13 16948747 16948767 -102796131 + (TATG)n Simple_repeat Simple_repeat 2 21 0 30 0 0 0 chr13 16949392 16949422 -102795476 + AT_rich Low_complexity Low_complexity 1 30 0 617 239 222 0 chr13 16951530 16951710 -102793188 - MER58A DNA MER1_type -4 220 1 4120 115 7 7 chr13 16952042 16952606 -102792292 + LTR6A LTR ERV1 1 564 0 21 0 0 0 chr13 16953742 16953763 -102791135 + AT_rich Low_complexity Low_complexity 1 21 0 2327 81 7 0 chr13 16954479 16954776 -102790122 + AluY SINE Alu 1 299 -12 21 0 0 0 chr13 16954897 16954918 -102789980 + AT_rich Low_complexity Low_complexity 1 21 0 2016 133 7 3 chr13 16955089 16955391 -102789507 + AluSx SINE Alu 1 303 -9 361 316 105 55 chr13 16955515 16955684 -102789214 - L1M4 LINE L1 -1707 4439 4280 2143 127 0 0 chr13 16955684 16955984 -102788914 - AluSg1 SINE Alu -9 300 1 361 316 105 55 chr13 16955984 16956412 -102788486 - L1M4 LINE L1 -1866 4280 3812 398 208 75 0 chr13 16956454 16956574 -102788324 - L1MC4 LINE L1 0 8042 7914 528 279 53 4 chr13 16956628 16956890 -102788008 + L1M4 LINE L1 2890 3164 -2982 309 26 0 0 chr13 16956959 16956997 -102787901 + (CA)n Simple_repeat Simple_repeat 2 39 0 385 299 80 25 chr13 16957042 16957366 -102787532 - L1M4 LINE L1 -3267 2879 2538 * 5662 169 27 15 chr13 16957360 16957683 -102787215 - L1PB2 LINE L1 -2 6149 5832 2051 159 0 0 chr13 16957683 16957991 -102786907 - AluSq SINE Alu -5 308 1 5662 169 27 15 chr13 16957991 16959383 -102785515 - L1PB2 LINE L1 -319 5832 4413 406 146 47 19 chr13 16959385 16959605 -102785293 + (TA)n Simple_repeat Simple_repeat 1 226 0 2583 210 43 3 chr13 16959605 16960187 -102784711 - L1PB2 LINE L1 -1747 4399 3795 566 285 39 0 chr13 16960183 16960390 -102784508 - L1M4 LINE L1 -3597 2549 2335 * 426 273 35 41 chr13 16960434 16960606 -102784292 + L1MEc LINE L1 56 226 -6170 2924 194 7 4 chr13 16960734 16961296 -102783602 - L1PA12 LINE L1 -1122 5024 4461 6333 110 13 9 chr13 16961296 16962440 -102782458 + L1PA12 LINE L1 5026 6168 0 212 337 0 23 chr13 16962528 16962614 -102782284 - L2 LINE L2 -1 3271 3188 261 0 0 0 chr13 16962635 16962664 -102782234 + (TG)n Simple_repeat Simple_repeat 2 30 0 3663 201 59 82 chr13 16962723 16964317 -102780581 + L1M1 LINE L1 3142 4700 -2865 1551 137 26 26 chr13 16964333 16964604 -102780294 + AluSx SINE Alu 6 276 -36 888 157 38 22 chr13 16964604 16964789 -102780109 - MER41-int LTR ERV1 -6094 2026 1839 * 1515 177 22 4 chr13 16964788 16965059 -102779839 - MER41-int LTR ERV1 -3592 2354 2079 360 256 0 25 chr13 16966288 16966409 -102778489 + GA-rich Low_complexity Low_complexity 3 120 0 433 238 79 45 chr13 16967607 16968020 -102776878 - HSREP522 Satellite telomeric -436 426 1 1716 213 54 16 chr13 16970106 16970593 -102774305 - L1M LINE L1 -814 5332 4844 2325 70 0 0 chr13 16970593 16970877 -102774021 + AluYa5 SINE Alu 19 302 -9 207 0 0 0 chr13 16971417 16971440 -102773458 + (A)n Simple_repeat Simple_repeat 1 23 0 3448 183 19 84 chr13 16971440 16971716 -102773182 - L1 LINE L1 -1287 6278 5986 2256 114 0 0 chr13 16971716 16972024 -102772874 - AluSg SINE Alu -2 308 1 3448 183 19 84 chr13 16972024 16972682 -102772216 - L1 LINE L1 -1579 5986 5405 2087 288 64 51 chr13 16972665 16972889 -102772009 - L1 LINE L1 -5176 2389 2170 * 279 0 0 0 chr13 16972889 16972920 -102771978 + (TG)n Simple_repeat Simple_repeat 1 31 0 1965 153 0 0 chr13 16972923 16973205 -102771693 - AluSx SINE Alu -30 282 1 2087 288 64 51 chr13 16973205 16974649 -102770249 - L1 LINE L1 -5396 2169 17 * 2846 268 65 25 chr13 16974647 16975975 -102768923 - L1M4 LINE L1 -1635 4511 3130 1900 126 25 0 chr13 16975975 16976280 -102768618 - AluSx SINE Alu 0 312 1 1658 191 3 13 chr13 16977452 16977756 -102767142 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr13 16977991 16978012 -102766886 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 16978049 16978070 -102766828 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr13 16983711 16983760 -102761138 + AT_rich Low_complexity Low_complexity 1 49 0 188 67 33 0 chr13 16984683 16984713 -102760185 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 1151 136 10 40 chr13 16984713 16984911 -102759987 + AluSg/x SINE Alu 106 297 -12 261 331 54 0 chr13 16984911 16985040 -102759858 - L1ME LINE L1 -486 5635 5497 289 96 96 0 chr13 16985196 16985248 -102759650 - Charlie7 DNA MER1_type 0 2612 2556 795 162 5 136 chr13 16985257 16985448 -102759450 + FAM SINE Alu 1 40 -9 228 111 0 0 chr13 16985711 16985747 -102759151 + (TG)n Simple_repeat Simple_repeat 2 37 0 1775 151 7 7 chr13 16985748 16986033 -102758865 - AluSx SINE Alu -27 285 1 2218 104 3 0 chr13 16986189 16986486 -102758412 + AluY SINE Alu 1 298 -13 301 330 71 9 chr13 16987347 16987459 -102757439 + L2 LINE L2 3151 3269 -3 234 0 0 0 chr13 16987649 16987675 -102757223 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 191 0 0 chr13 16987675 16987801 -102757097 + AluSg/x SINE Alu 137 262 -50 216 0 0 0 chr13 16987801 16987825 -102757073 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 526 338 102 3 chr13 16987844 16988128 -102756770 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 16988215 16988327 -102756571 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1764 191 23 22 chr13 16988328 16988702 -102756196 - MLT2C1 LTR ERVL -20 444 1 301 330 71 9 chr13 16989886 16989998 -102754900 + L2 LINE L2 3151 3269 -3 453 241 54 30 chr13 16990569 16990735 -102754163 + L1ME4a LINE L1 5950 6119 -2 2011 132 0 14 chr13 16990736 16991052 -102753846 - AluSx SINE Alu 0 312 1 1992 135 10 0 chr13 16991831 16992119 -102752779 + AluSg SINE Alu 1 291 -19 8891 114 31 22 chr13 16992155 16992944 -102751954 - HSMAR1 DNA Mariner 0 1287 481 2138 128 0 0 chr13 16992944 16993241 -102751657 + AluSx SINE Alu 1 297 -15 8891 114 31 22 chr13 16993241 16993727 -102751171 - HSMAR1 DNA Mariner -806 481 1 28 61 0 0 chr13 16993861 16993910 -102750988 + AT_rich Low_complexity Low_complexity 1 49 0 2387 97 0 3 chr13 16993962 16994272 -102750626 - AluSc SINE Alu 0 309 1 1563 156 52 0 chr13 16994327 16994628 -102750270 - AluSx SINE Alu 0 315 1 860 211 12 0 chr13 16994854 16995042 -102749856 - AluSg/x SINE Alu 0 303 114 968 150 36 74 chr13 16995175 16995289 -102749609 - L1PA16 LINE L1 0 6154 6037 1629 187 3 0 chr13 16995289 16995583 -102749315 - AluJb SINE Alu -13 299 5 968 150 36 74 chr13 16995583 16995763 -102749135 - L1PA16 LINE L1 -117 6037 5806 758 143 59 0 chr13 16996135 16996254 -102748644 - AluJb SINE Alu -185 127 2 745 125 29 0 chr13 16996496 16996600 -102748298 - U6 snRNA snRNA 0 107 1 4844 213 57 29 chr13 16996630 16997857 -102747041 - Charlie1a DNA MER1_type -193 1262 1 391 272 32 38 chr13 16998156 16998314 -102746584 - HERV16 LTR ERVL -4479 517 361 239 54 27 0 chr13 16998464 16998501 -102746397 + (TA)n Simple_repeat Simple_repeat 2 39 0 630 303 56 8 chr13 16998690 16998924 -102745974 - LTR16C LTR ERVL -8 483 239 568 276 129 42 chr13 16999234 16999911 -102744987 + L1ME LINE L1 4955 5704 -460 559 274 88 0 chr13 16999969 17000178 -102744720 + MIR SINE MIR 28 255 -7 266 241 0 76 chr13 17000300 17000379 -102744519 + MIR SINE MIR 153 225 -37 855 114 8 0 chr13 17000477 17000608 -102744290 + L1P4 LINE L1 5317 5448 -715 402 255 84 60 chr13 17000623 17001412 -102743486 + HSREP522 Satellite telomeric 1 807 -123 204 182 15 61 chr13 17001817 17001883 -102743015 + (TTGGGG)n Simple_repeat Simple_repeat 2 64 0 205 177 30 79 chr13 17003216 17003667 -102741231 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 302 191 48 34 chr13 17003279 17003291 -102741607 + (TA)n Simple_repeat Simple_repeat 2 12 -138 2032 125 3 0 chr13 17003291 17003579 -102741319 - AluSx SINE Alu -23 289 1 302 191 48 34 chr13 17003579 17003713 -102741185 + (TA)n Simple_repeat Simple_repeat 12 150 0 25 65 0 0 chr13 17004649 17004695 -102740203 + AT_rich Low_complexity Low_complexity 1 46 0 207 271 0 0 chr13 17004772 17004820 -102740078 - L2 LINE L2 -1 3271 3224 194 246 0 49 chr13 17005222 17005283 -102739615 - L2 LINE L2 -12 3301 3244 459 239 63 28 chr13 17005283 17005425 -102739473 - MER104 DNA Tc2 0 180 34 1804 169 0 7 chr13 17005525 17005821 -102739077 + AluJo SINE Alu 1 294 -18 452 280 168 19 chr13 17005825 17006044 -102738854 - MIR SINE MIR -11 251 4 219 282 122 53 chr13 17007726 17007857 -102737041 - MER5A DNA MER1_type 0 189 50 334 209 305 38 chr13 17007862 17007967 -102736931 + FLAM_A SINE Alu 1 133 0 21 57 0 0 chr13 17008606 17008641 -102736257 + AT_rich Low_complexity Low_complexity 1 35 0 392 275 83 21 chr13 17008867 17009102 -102735796 + MER102b DNA MER1_type 81 340 -1 21 0 0 0 chr13 17009482 17009503 -102735395 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 193 28 chr13 17010165 17010274 -102734624 - L2 LINE L2 0 3272 3146 2189 115 0 0 chr13 17010973 17011260 -102733638 - AluSc SINE Alu -22 287 1 213 255 0 0 chr13 17011294 17011341 -102733557 + (TTA)n Simple_repeat Simple_repeat 2 48 0 617 158 167 0 chr13 17012196 17012310 -102732588 - FLAM_C SINE Alu 0 133 1 622 208 0 0 chr13 17013258 17013364 -102731534 + U6 snRNA snRNA 1 106 -1 191 325 91 26 chr13 17013987 17014141 -102730757 - MIR SINE MIR -42 220 57 22 0 0 0 chr13 17014628 17014650 -102730248 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 17014878 17014920 -102729978 + AT_rich Low_complexity Low_complexity 1 42 0 2041 195 35 16 chr13 17014920 17015346 -102729552 - Tigger2a DNA MER2_type 0 434 1 206 139 47 0 chr13 17015598 17015641 -102729257 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 847 187 0 0 chr13 17015968 17016107 -102728791 - FAM SINE Alu -25 160 22 1353 167 3 110 chr13 17016142 17016477 -102728421 - AluJb SINE Alu -13 299 1 2778 190 48 9 chr13 17016841 17017382 -102727516 - MER68 LTR ERV1 0 562 1 27 0 0 0 chr13 17017785 17017812 -102727086 + AT_rich Low_complexity Low_complexity 1 27 0 2146 119 7 10 chr13 17017935 17018245 -102726653 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 17018245 17018271 -102726627 + AT_rich Low_complexity Low_complexity 1 26 0 1918 150 17 0 chr13 17018305 17018599 -102726299 - AluSq SINE Alu -14 299 1 2645 155 0 39 chr13 17018609 17019067 -102725831 - L1MC1 LINE L1 0 6333 5894 819 128 53 0 chr13 17020071 17020204 -102724694 - Tigger7 DNA MER2_type 0 2487 2348 682 165 44 25 chr13 17020205 17020363 -102724535 + MER21A LTR ERV1 747 907 -24 584 236 0 24 chr13 17020805 17020928 -102723970 - FLAM_A SINE Alu -17 125 6 291 354 61 26 chr13 17021084 17021313 -102723585 - MIR SINE MIR -6 256 20 671 187 0 0 chr13 17024326 17024433 -102720465 + FLAM_A SINE Alu 1 107 -35 2040 125 0 39 chr13 17024686 17024991 -102719907 + AluSx SINE Alu 1 293 -19 1254 201 32 57 chr13 17025178 17025461 -102719437 - AluJb SINE Alu -24 288 13 21 89 0 0 chr13 17025557 17025613 -102719285 + AT_rich Low_complexity Low_complexity 1 56 0 6607 35 0 0 chr13 17025834 17026612 -102718286 - L1PA5 LINE L1 -1 6153 5376 1582 199 0 7 chr13 17026996 17027278 -102717620 - AluJb SINE Alu -30 282 3 1329 243 0 24 chr13 17027312 17027608 -102717290 + AluJo SINE Alu 1 289 -23 2355 94 0 0 chr13 17027802 17028100 -102716798 + AluY SINE Alu 1 298 -13 290 183 195 12 chr13 17028967 17029049 -102715849 - MER5A DNA MER1_type -83 106 10 200 196 0 0 chr13 17031224 17031270 -102713628 + (TG)n Simple_repeat Simple_repeat 1 46 0 237 306 147 12 chr13 17031673 17031843 -102713055 - Charlie1 DNA MER1_type -2563 198 6 1900 162 0 0 chr13 17032091 17032394 -102712504 - AluSx SINE Alu -4 308 6 22 56 0 0 chr13 17032506 17032542 -102712356 + AT_rich Low_complexity Low_complexity 1 36 0 1945 140 7 3 chr13 17034158 17034471 -102710427 + AluSp SINE Alu 1 314 0 1911 162 7 0 chr13 17034910 17035212 -102709686 + AluSx SINE Alu 1 304 -8 206 225 0 0 chr13 17035494 17035534 -102709364 + L2 LINE L2 3262 3301 -12 1345 251 30 0 chr13 17035755 17036054 -102708844 - AluJo SINE Alu -4 308 1 26 30 0 0 chr13 17036736 17036769 -102708129 + AT_rich Low_complexity Low_complexity 1 33 0 26 74 0 0 chr13 17037716 17037770 -102707128 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr13 17037842 17037865 -102707033 + (A)n Simple_repeat Simple_repeat 1 23 0 607 45 23 11 chr13 17038741 17038829 -102706069 + L1PA5 LINE L1 6066 6154 0 22 35 0 0 chr13 17039761 17039790 -102705108 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 17040490 17040528 -102704370 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr13 17040604 17040651 -102704247 + AT_rich Low_complexity Low_complexity 1 47 0 1957 136 0 3 chr13 17040837 17041161 -102703737 - AluSq SINE Alu 0 323 1 527 281 60 46 chr13 17041265 17041550 -102703348 + L1MB7 LINE L1 5387 5675 -2133 21 0 0 0 chr13 17041596 17041617 -102703281 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 17042543 17042566 -102702332 + AT_rich Low_complexity Low_complexity 1 23 0 5834 108 63 20 chr13 17044592 17046578 -102698320 + SVA Other Other 343 1381 -5 950 234 48 18 chr13 17047107 17047380 -102697518 + L1MB7 LINE L1 5904 6184 0 404 318 54 7 chr13 17048090 17048238 -102696660 - L2 LINE L2 -430 2884 2730 1861 215 81 26 chr13 17049310 17049803 -102695095 - L1MB8 LINE L1 -6 6172 5653 206 233 50 0 chr13 17050832 17050892 -102694006 - MIR SINE MIR -2 260 198 1466 199 7 20 chr13 17050912 17051208 -102693690 + AluJo SINE Alu 1 292 -20 2154 140 0 0 chr13 17051634 17051941 -102692957 + AluSx SINE Alu 1 307 -5 2172 118 0 3 chr13 17052291 17052587 -102692311 + AluSg SINE Alu 1 295 -15 180 232 168 42 chr13 17052923 17053018 -102691880 + L3 LINE CR1 1310 1416 -161 21 0 0 0 chr13 17053713 17053734 -102691164 + AT_rich Low_complexity Low_complexity 1 21 0 1716 133 81 3 chr13 17053734 17054019 -102690879 - AluSg SINE Alu -1 309 3 343 186 0 14 chr13 17054285 17054355 -102690543 + MER34C LTR ERV1 423 491 -94 22 35 0 0 chr13 17054360 17054389 -102690509 + AT_rich Low_complexity Low_complexity 1 29 0 2067 125 3 58 chr13 17054896 17055223 -102689675 + AluSq SINE Alu 1 309 -4 3144 113 53 0 chr13 17055613 17056082 -102688816 - L1PA10 LINE L1 -20 6148 5655 1185 234 91 25 chr13 17056178 17056542 -102688356 - MER4E LTR ERV1 -391 388 1 1241 211 68 9 chr13 17056762 17057084 -102687814 - L1MB8 LINE L1 -5 6173 5833 2110 148 78 5 chr13 17057084 17057496 -102687402 - MER61C LTR ERV1 0 434 4 2257 206 48 46 chr13 17057504 17058562 -102686336 - L1MB8 LINE L1 -342 5836 4771 702 321 77 10 chr13 17059904 17060283 -102684615 - MLT1G1 LTR MaLR -34 561 79 1220 183 73 0 chr13 17060320 17060594 -102684304 - L1MA5 LINE L1 -6 6294 6001 1015 239 31 12 chr13 17060661 17060920 -102683978 - AluJo SINE Alu -48 264 1 2997 214 27 13 chr13 17060921 17062041 -102682857 - L1MA5 LINE L1 -354 5946 4808 1469 207 14 27 chr13 17062154 17062449 -102682449 - AluJo SINE Alu -16 296 6 24 0 0 0 chr13 17063734 17063758 -102681140 + AT_rich Low_complexity Low_complexity 1 24 0 366 267 0 0 chr13 17064864 17064965 -102679933 - L1MA9 LINE L1 -49 6263 6163 638 139 0 0 chr13 17065906 17066007 -102678891 - AluSg/x SINE Alu -12 297 197 1267 105 19 43 chr13 17066107 17066317 -102678581 + AluSg/x SINE Alu 98 302 -10 1952 146 17 0 chr13 17066495 17066790 -102678108 + AluSx SINE Alu 1 300 -12 4532 172 31 18 chr13 17066826 17067955 -102676943 + L1PA16 LINE L1 5026 6165 -1 2022 135 3 0 chr13 17068114 17068402 -102676496 - AluSc SINE Alu -20 289 1 21 0 0 0 chr13 17068763 17068784 -102676114 + AT_rich Low_complexity Low_complexity 1 21 0 243 295 139 85 chr13 17069311 17069721 -102675177 + L2 LINE L2 2836 3267 -5 1192 214 231 18 chr13 17070346 17070804 -102674094 - L1MC4 LINE L1 -668 7374 6819 270 226 37 48 chr13 17071406 17071550 -102673348 - HSAT5 Satellite Satellite 0 142 1 273 238 12 18 chr13 17071818 17071914 -102672984 - HSAT5 Satellite Satellite 0 95 1 265 258 0 15 chr13 17072326 17072392 -102672506 + (CA)n Simple_repeat Simple_repeat 2 66 0 2087 108 87 44 chr13 17072619 17073055 -102671843 - SN5 Other centromeric 0 455 1 1201 253 72 3 chr13 17075137 17075442 -102669456 + MSTA LTR MaLR 1 326 -102 1217 184 21 4 chr13 17075498 17075732 -102669166 + MSTA-int LTR MaLR 13 250 -1401 * 1408 151 12 16 chr13 17075729 17075981 -102668917 + MSTA-int LTR MaLR 1401 1651 0 1321 240 26 47 chr13 17075981 17076365 -102668533 + MSTA LTR MaLR 1 376 -52 407 223 187 0 chr13 17076390 17076529 -102668369 - MST-int LTR MaLR -981 670 506 338 244 0 0 chr13 17076526 17076608 -102668290 + MSTA-int LTR MaLR 28 109 -1542 * 301 179 18 0 chr13 17076739 17076795 -102668103 + MSTA-int LTR MaLR 911 967 -613 * 838 211 198 21 chr13 17076783 17077025 -102667873 - THE1-int LTR MaLR -389 1191 907 1242 200 64 7 chr13 17077030 17077310 -102667588 + MSTA LTR MaLR 77 372 -56 521 212 167 0 chr13 17077348 17077480 -102667418 - MST-int LTR MaLR -991 660 507 5490 235 64 22 chr13 17077482 17079037 -102665861 + MSTA-int LTR MaLR 32 1651 0 372 215 0 0 chr13 17079311 17079376 -102665522 + MSTA LTR MaLR 95 159 -269 1409 215 6 41 chr13 17079383 17079727 -102665171 + MSTA-int LTR MaLR 1318 1649 -2 471 208 10 0 chr13 17079729 17079825 -102665073 + MSTA LTR MaLR 1 97 -331 249 182 36 18 chr13 17079921 17079976 -102664922 + THE1-int LTR MaLR 911 966 -614 671 234 191 26 chr13 17079978 17080209 -102664689 - THE1-int LTR MaLR -405 1175 907 1073 231 56 7 chr13 17080231 17080500 -102664398 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 17080517 17080671 -102664227 - THE1-int LTR MaLR -963 617 463 * 5596 216 53 47 chr13 17080666 17082212 -102662686 + MSTA-int LTR MaLR 28 1583 -68 343 159 0 48 chr13 17082284 17082347 -102662551 - MSTA LTR MaLR -52 376 317 388 158 26 0 chr13 17082349 17082425 -102662473 + MSTA-int LTR MaLR 1574 1651 0 365 263 10 0 chr13 17082425 17082524 -102662374 + MSTA LTR MaLR 1 100 -328 312 243 149 0 chr13 17082569 17082676 -102662222 + MSTA LTR MaLR 58 180 -248 1434 196 6 44 chr13 17082676 17083017 -102661881 + MSTA-int LTR MaLR 1324 1651 0 555 135 21 10 chr13 17083017 17083113 -102661785 + MSTA LTR MaLR 1 97 -331 231 236 18 0 chr13 17083198 17083253 -102661645 + THE1-int LTR MaLR 911 966 -614 686 242 186 22 chr13 17083255 17083486 -102661412 - THE1-int LTR MaLR -405 1175 907 947 267 49 8 chr13 17083513 17083779 -102661119 + MSTA LTR MaLR 98 374 -54 332 244 170 7 chr13 17083817 17083952 -102660946 - MST-int LTR MaLR -992 659 503 5923 231 53 23 chr13 17083952 17085523 -102659375 + MSTA-int LTR MaLR 34 1651 0 360 261 10 2 chr13 17085523 17085645 -102659253 + MSTA LTR MaLR 1 122 -304 354 197 28 14 chr13 17085945 17086016 -102658882 - THE1-int LTR MaLR -602 978 907 1073 231 56 7 chr13 17086038 17086307 -102658591 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 17086324 17086478 -102658420 - THE1-int LTR MaLR -963 617 463 * 5576 224 48 48 chr13 17086473 17088029 -102656869 + MSTA-int LTR MaLR 28 1583 -68 259 128 0 0 chr13 17088029 17088068 -102656830 + MST-int LTR MaLR 623 661 -990 341 159 0 48 chr13 17088102 17088165 -102656733 - MSTA LTR MaLR -52 376 317 352 160 40 0 chr13 17088167 17088242 -102656656 + MST-int LTR MaLR 1574 1651 0 390 253 10 0 chr13 17088242 17088341 -102656557 + MSTA LTR MaLR 1 100 -328 352 213 148 9 chr13 17088386 17088494 -102656404 + MSTA LTR MaLR 58 180 -248 1372 220 3 41 chr13 17088494 17088835 -102656063 + MSTA-int LTR MaLR 1324 1651 0 508 156 21 10 chr13 17088835 17088931 -102655967 + MSTA LTR MaLR 1 97 -331 734 206 228 21 chr13 17089064 17089297 -102655601 - THE1-int LTR MaLR -393 1187 907 994 232 62 28 chr13 17089301 17089590 -102655308 + MSTA LTR MaLR 76 374 -54 384 232 163 2 chr13 17089608 17089760 -102655138 - MST-int LTR MaLR -963 661 463 * 6106 230 56 23 chr13 17089755 17091327 -102653571 + MSTA-int LTR MaLR 28 1651 0 432 208 10 0 chr13 17091327 17091423 -102653475 + MSTA LTR MaLR 1 97 -331 460 167 23 5 chr13 17091582 17091686 -102653212 - MSTA LTR MaLR -262 113 3 1242 214 16 38 chr13 17091688 17092006 -102652892 - MSTA-int LTR MaLR 0 1651 1341 293 260 55 14 chr13 17092013 17092086 -102652812 - MSTA LTR MaLR -258 170 95 338 154 0 0 chr13 17092269 17092321 -102652577 + MSTA LTR MaLR 325 376 -52 5531 228 53 37 chr13 17092394 17093925 -102650973 - MSTA-int LTR MaLR -68 1583 28 504 237 33 26 chr13 17093920 17094072 -102650826 + THE1-int LTR MaLR 463 615 -965 * 1058 243 56 4 chr13 17094091 17094358 -102650540 - MSTA LTR MaLR -52 376 96 674 225 191 26 chr13 17094382 17094613 -102650285 + THE1-int LTR MaLR 907 1175 -405 257 164 36 18 chr13 17094615 17094670 -102650228 - THE1-int LTR MaLR -614 966 911 460 167 23 5 chr13 17094758 17094862 -102650036 - MSTA LTR MaLR -262 113 3 1240 195 25 47 chr13 17094864 17095182 -102649716 - MSTA-int LTR MaLR 0 1651 1341 258 229 41 107 chr13 17095188 17095310 -102649588 - MSTA LTR MaLR -257 171 58 471 208 10 0 chr13 17095335 17095431 -102649467 - MSTA LTR MaLR -331 97 1 538 198 27 0 chr13 17095431 17095542 -102649356 - MSTA-int LTR MaLR 0 1651 1538 207 204 46 56 chr13 17095554 17095662 -102649236 + (CCCCAA)n Simple_repeat Simple_repeat 3 109 0 385 232 11 0 chr13 17095665 17095760 -102649138 - MSTA LTR MaLR -328 100 5 6001 233 52 22 chr13 17095762 17097332 -102647566 - MSTA-int LTR MaLR 0 1651 34 317 255 152 9 chr13 17097332 17097487 -102647411 + MST-int LTR MaLR 462 661 -963 969 221 62 28 chr13 17097505 17097794 -102647104 - MSTA LTR MaLR -54 374 76 700 247 169 50 chr13 17097798 17098077 -102646821 + THE1-int LTR MaLR 907 1218 -362 282 214 18 0 chr13 17098030 17098086 -102646812 - THE1-int LTR MaLR -613 967 911 * 555 135 21 10 chr13 17098171 17098267 -102646631 - MSTA LTR MaLR -331 97 1 1352 214 3 41 chr13 17098267 17098608 -102646290 - MSTA-int LTR MaLR 0 1651 1324 355 208 160 0 chr13 17098608 17098714 -102646184 - MSTA LTR MaLR -248 180 58 997 166 6 6 chr13 17098855 17099018 -102645880 - AluSx SINE Alu -149 163 1 21 36 0 0 chr13 17099313 17099341 -102645557 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 17100494 17100538 -102644360 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 17100917 17100938 -102643960 + AT_rich Low_complexity Low_complexity 1 21 0 208 313 0 0 chr13 17101454 17101502 -102643396 - L2 LINE L2 -15 3257 3210 507 123 0 0 chr13 17101541 17101614 -102643284 + MADE1 DNA Mariner 3 75 -5 823 219 101 6 chr13 17102550 17102719 -102642179 - MER5A DNA MER1_type -4 185 1 226 200 100 78 chr13 17103577 17103667 -102641231 + MARNA DNA Mariner 15 106 -480 1432 222 134 43 chr13 17104009 17104710 -102640188 + LTR1B LTR ERV1 137 826 0 431 257 9 0 chr13 17104966 17105079 -102639819 - LTR43 LTR ERV1 -306 296 183 2112 110 43 3 chr13 17105670 17105970 -102638928 - AluSq SINE Alu -1 312 1 21 36 0 0 chr13 17106025 17106053 -102638845 + AT_rich Low_complexity Low_complexity 1 28 0 881 160 0 0 chr13 17106053 17106178 -102638720 - FLAM_C SINE Alu -18 125 1 306 366 0 7 chr13 17106760 17106902 -102637996 - HERV16 LTR ERVL -4335 661 521 2218 105 3 7 chr13 17106962 17107266 -102637632 - AluSp SINE Alu 0 313 11 1587 184 153 22 chr13 17107518 17107931 -102636967 - MLT1C LTR MaLR 0 467 1 572 257 161 8 chr13 17108115 17108364 -102636534 - LTR16A1 LTR ERVL -3 454 168 228 258 30 0 chr13 17109354 17109420 -102635478 - MIR SINE MIR -131 131 64 21 0 0 0 chr13 17109420 17109441 -102635457 + AT_rich Low_complexity Low_complexity 1 21 0 200 236 32 38 chr13 17110727 17110884 -102634014 + (TTATA)n Simple_repeat Simple_repeat 4 159 0 4583 194 31 28 chr13 17111733 17112621 -102632277 - MER54A LTR ERVL -1 900 10 722 164 0 0 chr13 17113452 17113568 -102631330 + AluJb SINE Alu 2 117 -195 1512 314 77 33 chr13 17113956 17115060 -102629838 + L2 LINE L2 2157 3305 -8 2208 113 0 3 chr13 17115205 17115498 -102629400 + AluSg SINE Alu 1 292 -18 7274 58 7 0 chr13 17115920 17117611 -102627287 - L1PA6 LINE L1 -5 6149 4451 3987 120 43 52 chr13 17117738 17118660 -102626238 - MER11A LTR ERVK -326 910 1 20163 103 15 8 chr13 17118661 17122961 -102621937 - L1P LINE L1 -1809 4337 13 1651 231 47 42 chr13 17123076 17123670 -102621228 + L1M4 LINE L1 4629 5225 -921 1232 125 11 0 chr13 17123670 17123854 -102621044 + AluSg/x SINE Alu 117 302 -10 419 233 35 0 chr13 17123938 17124110 -102620788 + (TA)n Simple_repeat Simple_repeat 2 179 0 182 329 12 12 chr13 17125624 17125709 -102619189 + MIR SINE MIR 116 200 -62 2041 134 10 3 chr13 17125753 17126059 -102618839 - AluJb SINE Alu -1 311 4 378 228 147 52 chr13 17126331 17126467 -102618431 + L2 LINE L2 3119 3267 -46 2166 119 0 0 chr13 17126503 17126806 -102618092 + AluSx SINE Alu 1 303 -9 286 240 80 0 chr13 17126836 17126911 -102617987 - MIR SINE MIR -70 192 112 189 0 0 0 chr13 17126945 17126966 -102617932 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1659 169 34 7 chr13 17127053 17127348 -102617550 + AluJb SINE Alu 1 303 -9 2146 114 0 3 chr13 17127660 17127959 -102616939 - AluSp SINE Alu -15 298 1 245 27 54 0 chr13 17127962 17127999 -102616899 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 279 128 85 0 chr13 17128002 17128049 -102616849 - AluJ/FRAM SINE Alu -23 279 229 28 79 0 0 chr13 17130154 17130217 -102614681 + AT_rich Low_complexity Low_complexity 1 63 0 389 20 20 0 chr13 17130394 17130444 -102614454 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 953 74 8 8 chr13 17130444 17130560 -102614338 - AluY SINE Alu -195 116 1 308 286 63 17 chr13 17134663 17134838 -102610060 - HERV16 LTR ERVL -2033 2963 2781 205 365 0 48 chr13 17135889 17136015 -102608883 + MIR SINE MIR 32 151 -57 399 249 52 55 chr13 17136267 17136556 -102608342 - L1ME3A LINE L1 -180 5990 5657 245 222 0 0 chr13 17137048 17137093 -102607805 - L1ME3A LINE L1 -501 5669 5625 448 296 29 6 chr13 17137170 17137342 -102607556 - L1MC4 LINE L1 -143 7899 7724 673 219 55 7 chr13 17137998 17138144 -102606754 - L1MC4a LINE L1 -1052 6756 6604 214 309 48 67 chr13 17138695 17138905 -102605993 - L2 LINE L2 -1857 1457 1252 699 258 6 0 chr13 17138967 17139126 -102605772 - MER5B DNA MER1_type -18 160 1 533 103 0 13 chr13 17139427 17139505 -102605393 - MADE1 DNA Mariner -3 77 1 332 333 6 51 chr13 17139997 17140153 -102604745 - MIR3 SINE MIR -5 203 55 223 308 88 33 chr13 17141547 17141729 -102603169 + L3 LINE CR1 1216 1407 -170 279 226 43 96 chr13 17142137 17142252 -102602646 + MIR SINE MIR 112 220 -42 24 53 0 0 chr13 17145922 17145960 -102598938 + AT_rich Low_complexity Low_complexity 1 38 0 1022 136 22 33 chr13 17147556 17147740 -102597158 - MER49 LTR ERV1 -27 896 715 13611 44 2 1 chr13 17148890 17151237 -102593661 + L1PA5 LINE L1 3797 6145 -9 2043 104 32 26 chr13 17152027 17152336 -102592562 + AluY SINE Alu 1 311 0 1886 148 51 46 chr13 17152849 17153221 -102591677 + THE1C LTR MaLR 2 375 0 365 215 0 0 chr13 17153221 17153286 -102591612 + THE1C-int LTR MaLR 1 65 -1515 6623 156 18 7 chr13 17153286 17154430 -102590468 + THE1C-int LTR MaLR 215 1422 -158 313 173 0 0 chr13 17155505 17155557 -102589341 + MER51D LTR ERV1 500 551 -106 1976 136 3 10 chr13 17155669 17155970 -102588928 + AluSq SINE Alu 1 299 -14 8342 101 4 1 chr13 17156534 17157602 -102587296 - MER11C LTR ERVK 0 1071 1 21 71 0 0 chr13 17157657 17157699 -102587199 + AT_rich Low_complexity Low_complexity 1 42 0 2046 138 0 0 chr13 17157801 17158092 -102586806 + AluSq SINE Alu 1 291 -22 3013 21 0 0 chr13 17158436 17158763 -102586135 - L1PA2 LINE L1 0 6155 5829 3613 30 0 5 chr13 17158763 17159192 -102585706 + L1P LINE L1 4778 5204 -942 21 0 0 0 chr13 17159307 17159328 -102585570 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 17159468 17159496 -102585402 + AT_rich Low_complexity Low_complexity 1 28 0 2395 82 0 3 chr13 17159700 17160006 -102584892 - AluY SINE Alu -6 305 1 1232 126 6 0 chr13 17161329 17161503 -102583395 + AluSx SINE Alu 1 175 -137 24 67 0 0 chr13 17161823 17161868 -102583030 + AT_rich Low_complexity Low_complexity 1 45 0 1127 152 162 0 chr13 17162497 17162695 -102582203 + MER30 DNA MER1_type 1 230 0 3703 197 43 22 chr13 17162897 17163724 -102581174 - L1PA16 LINE L1 -5 6161 5317 5342 264 51 19 chr13 17163725 17164181 -102580717 - L1 LINE L1 -864 5282 4842 198 0 0 0 chr13 17164181 17164203 -102580695 + (TG)n Simple_repeat Simple_repeat 2 23 0 5342 264 51 19 chr13 17164203 17165658 -102579240 - L1 LINE L1 -1304 4842 3310 4191 230 80 29 chr13 17165669 17165864 -102579034 + L1MA8 LINE L1 3897 4081 -2219 2133 116 3 0 chr13 17165864 17166158 -102578740 - AluY SINE Alu -16 295 1 4191 230 80 29 chr13 17166158 17167900 -102576998 + L1MA8 LINE L1 4081 5941 -359 582 209 173 4 chr13 17167911 17168136 -102576762 + L1MA8 LINE L1 6025 6287 -4 2084 136 0 0 chr13 17168879 17169166 -102575732 - AluSc SINE Alu -16 293 7 1965 156 0 7 chr13 17169859 17170166 -102574732 + AluSg SINE Alu 5 309 -1 901 162 37 11 chr13 17170800 17170991 -102573907 + L1MA3 LINE L1 6110 6305 0 377 305 145 26 chr13 17175472 17175823 -102569075 + L1MB2 LINE L1 1076 1468 -4845 1307 232 21 7 chr13 17175838 17176122 -102568776 + AluJb SINE Alu 1 288 -24 529 306 70 10 chr13 17176124 17176523 -102568375 + L1MB2 LINE L1 1318 1740 -4644 681 288 121 24 chr13 17176658 17177081 -102567817 + L1MB2 LINE L1 1963 2426 -3958 308 266 57 95 chr13 17177111 17177560 -102567338 + L1MB2 LINE L1 2445 2910 -3472 2179 112 10 0 chr13 17177560 17177865 -102567033 + AluY SINE Alu 1 308 -3 308 266 57 95 chr13 17177865 17177890 -102567008 + L1MB2 LINE L1 2910 2934 -3448 1838 156 31 0 chr13 17177890 17178179 -102566719 + AluSx SINE Alu 12 309 -3 308 266 57 95 chr13 17178179 17178454 -102566444 + L1MB2 LINE L1 2934 3137 -3245 620 264 52 18 chr13 17178457 17178786 -102566112 + L1MB2 LINE L1 4747 5086 -1296 945 267 54 43 chr13 17178789 17178812 -102566086 + L1MB2 LINE L1 5911 5932 -475 2169 108 0 7 chr13 17178812 17179108 -102565790 - AluY SINE Alu -17 294 1 945 267 54 43 chr13 17179108 17179252 -102565646 + L1MB2 LINE L1 5932 6073 -334 1882 143 17 10 chr13 17179252 17179545 -102565353 + AluSp SINE Alu 1 295 -18 945 267 54 43 chr13 17179545 17179841 -102565057 + L1MB2 LINE L1 6073 6380 -27 361 287 46 63 chr13 17180232 17180254 -102564644 + L1MB2 LINE L1 1649 1670 -5180 2294 83 0 17 chr13 17180254 17180599 -102564299 + AluY SINE Alu 1 311 0 361 287 46 63 chr13 17180599 17180750 -102564148 + L1MB2 LINE L1 1670 1819 -5031 236 262 12 12 chr13 17180810 17180894 -102564004 + L1MB2 LINE L1 2513 2596 -4253 525 259 0 9 chr13 17180901 17181017 -102563881 + FLAM_C SINE Alu 1 115 -28 2021 125 0 4 chr13 17181275 17181591 -102563307 + AluSg1 SINE Alu 3 317 0 379 268 66 36 chr13 17181605 17181967 -102562931 + L1MB2 LINE L1 2556 2928 -3922 496 185 0 0 chr13 17182051 17182132 -102562766 + AluJ/FLAM SINE Alu 4 84 -228 685 278 71 44 chr13 17182152 17182505 -102562393 + L1MB2 LINE L1 2963 3305 -3543 1927 218 36 2 chr13 17182505 17182917 -102561981 - MSTB LTR MaLR 0 426 1 685 278 71 44 chr13 17182917 17183047 -102561851 + L1MB2 LINE L1 3305 3430 -3418 1401 214 30 10 chr13 17183047 17183351 -102561547 + AluJb SINE Alu 1 310 -2 685 278 71 44 chr13 17183351 17183474 -102561424 + L1MB2 LINE L1 3430 3586 -3262 1057 276 86 20 chr13 17183604 17184439 -102560459 + L1MB2 LINE L1 5378 6266 -607 22 0 0 0 chr13 17184458 17184480 -102560418 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr13 17184526 17184566 -102560332 + AT_rich Low_complexity Low_complexity 1 40 0 324 124 66 0 chr13 17184707 17184844 -102560054 + (TA)n Simple_repeat Simple_repeat 2 147 0 204 125 62 0 chr13 17184861 17184909 -102559989 + (TA)n Simple_repeat Simple_repeat 2 52 0 1521 202 51 33 chr13 17184909 17185324 -102559574 + L1MB2 LINE L1 6375 6802 -71 1271 243 7 10 chr13 17185324 17185612 -102559286 - AluJo SINE Alu -24 288 2 1521 202 51 33 chr13 17185612 17185667 -102559231 + L1MB2 LINE L1 6802 6855 -18 1905 103 4 8 chr13 17185885 17186147 -102558751 + AluSq SINE Alu 1 261 -52 429 353 20 5 chr13 17186156 17186357 -102558541 + L1MA9 LINE L1 348 551 -5404 402 288 31 18 chr13 17186488 17186651 -102558247 + L1MA9 LINE L1 701 865 -5090 3410 232 51 17 chr13 17186656 17188774 -102556124 + L1MA9 LINE L1 3981 6175 -25 22 35 0 0 chr13 17188849 17188878 -102556020 + AT_rich Low_complexity Low_complexity 1 29 0 203 413 0 0 chr13 17189331 17189406 -102555492 - L2 LINE L2 -498 2816 2742 357 342 161 0 chr13 17190652 17190813 -102554085 - MER5A DNA MER1_type -1 188 2 429 216 92 60 chr13 17190959 17191177 -102553721 + L1MC4 LINE L1 7281 7505 -537 2247 98 0 29 chr13 17191509 17191824 -102553074 - AluSx SINE Alu -6 306 1 235 331 162 7 chr13 17192678 17192826 -102552072 - MER5A DNA MER1_type 0 189 19 252 216 18 108 chr13 17193043 17193154 -102551744 - MIR SINE MIR -9 253 153 1996 127 3 3 chr13 17193238 17193521 -102551377 - AluSp SINE Alu -30 283 1 2219 174 16 5 chr13 17195245 17195677 -102549221 - LTR56 LTR ERV1 0 445 9 1370 180 26 16 chr13 17196167 17196595 -102548303 - MER67C LTR ERV1 -1 709 218 2051 119 10 0 chr13 17197501 17197796 -102547102 + AluSx SINE Alu 1 298 -14 2153 124 3 10 chr13 17197833 17198140 -102546758 - AluSp SINE Alu -8 305 1 22 0 0 0 chr13 17198478 17198500 -102546398 + AT_rich Low_complexity Low_complexity 1 22 0 1215 49 0 19 chr13 17198500 17198662 -102546236 - L1PA4 LINE L1 -1 6154 5996 695 131 4 0 chr13 17198667 17208278 -102536620 - CER Satellite Satellite 0 9649 1 40398 56 3 2 chr13 17208301 17214453 -102530445 + L1PA4 LINE L1 9 6164 0 328 272 108 52 chr13 17214536 17214749 -102530149 + L1MDa LINE L1 1514 1738 -4802 252 300 70 19 chr13 17214797 17215007 -102529891 + L1MDa LINE L1 1657 2080 -4641 21 0 0 0 chr13 17215156 17215177 -102529721 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 17215293 17215317 -102529581 + AT_rich Low_complexity Low_complexity 1 24 0 361 233 39 23 chr13 17215571 17215700 -102529198 + L1MEc LINE L1 55 185 -6211 731 320 64 63 chr13 17215825 17216705 -102528193 + L1MEc LINE L1 351 1222 -4983 765 150 23 0 chr13 17216786 17216919 -102527979 - MSTB1 LTR MaLR -296 136 1 232 164 14 14 chr13 17218184 17218257 -102526641 + (TA)n Simple_repeat Simple_repeat 2 74 0 1391 181 87 56 chr13 17218291 17218673 -102526225 - LTR49 LTR ERV1 -168 427 30 2017 122 7 4 chr13 17218673 17218952 -102525946 + AluSq SINE Alu 14 293 -20 1391 181 87 56 chr13 17218952 17218983 -102525915 - LTR49 LTR ERV1 -565 30 1 21 57 0 0 chr13 17219376 17219411 -102525487 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr13 17219438 17219477 -102525421 + AT_rich Low_complexity Low_complexity 1 39 0 461 246 144 5 chr13 17219963 17220150 -102524748 + MER20 DNA MER1_type 4 216 -3 1775 163 58 21 chr13 17220290 17220719 -102524179 - LTR56 LTR ERV1 0 445 1 2212 187 91 11 chr13 17220903 17221453 -102523445 - LTR49 LTR ERV1 -1 594 1 31 58 0 0 chr13 17222019 17222071 -102522827 + AT_rich Low_complexity Low_complexity 1 52 0 317 263 26 20 chr13 17222228 17222380 -102522518 + (TA)n Simple_repeat Simple_repeat 1 153 0 26 0 0 0 chr13 17222495 17222521 -102522377 + AT_rich Low_complexity Low_complexity 1 26 0 14049 40 1 0 chr13 17222609 17224353 -102520545 - L1PA2 LINE L1 -1961 4185 2440 9981 31 0 2 chr13 17224353 17226320 -102518578 + L1PA2 LINE L1 4190 6155 0 22 35 0 0 chr13 17226320 17226349 -102518549 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 17226416 17226437 -102518461 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1367 253 46 10 chr13 17227153 17227568 -102517330 - MER54A LTR ERVL 0 901 472 2197 118 74 15 chr13 17227606 17227944 -102516954 - THE1B LTR MaLR 0 364 7 1626 214 51 2 chr13 17227953 17228346 -102516552 - MER54A LTR ERVL -489 412 1 22 0 0 0 chr13 17229520 17229542 -102515356 + AT_rich Low_complexity Low_complexity 1 22 0 1553 203 0 11 chr13 17229542 17229823 -102515075 - AluJo SINE Alu -24 288 11 1314 242 41 70 chr13 17230810 17231052 -102513846 - MLT1D LTR MaLR 0 505 257 2141 110 7 0 chr13 17231052 17231343 -102513555 - AluY SINE Alu -16 295 3 1314 242 41 70 chr13 17231343 17231616 -102513282 - MLT1D LTR MaLR -248 257 5 472 213 22 0 chr13 17231711 17231847 -102513051 + GA-rich Low_complexity Low_complexity 2 140 0 1936 234 42 75 chr13 17231853 17232451 -102512447 + MER77 LTR ERV1 22 599 -6 901 271 64 23 chr13 17233587 17234265 -102510633 - L1MEc LINE L1 -3483 2732 2046 3402 243 41 30 chr13 17234265 17235203 -102509695 + Tigger6a DNA MER2_type 2 955 -642 1704 192 3 7 chr13 17235203 17235510 -102509388 - AluJb SINE Alu -6 306 1 3402 243 41 30 chr13 17235510 17235641 -102509257 + Tigger6a DNA MER2_type 955 1083 0 901 271 64 23 chr13 17235641 17235718 -102509180 - L1MEc LINE L1 -4169 2046 1974 5252 170 8 22 chr13 17235766 17236942 -102507956 + L1PA16 LINE L1 5007 6165 -1 286 254 65 113 chr13 17236948 17237122 -102507776 - L1MEc LINE L1 -4417 1979 1798 2294 114 0 0 chr13 17237122 17237429 -102507469 - AluSg SINE Alu -3 307 1 286 254 65 113 chr13 17237429 17237510 -102507388 - L1MEc LINE L1 -4598 1798 1715 3423 29 0 17 chr13 17237510 17237930 -102506968 + L1PA4 LINE L1 5740 6152 -3 286 254 65 113 chr13 17237930 17238240 -102506658 - L1MEc LINE L1 -4681 1715 1440 330 320 77 6 chr13 17238261 17238417 -102506481 - L1MEc LINE L1 -4868 1245 1079 1032 322 67 19 chr13 17238429 17239158 -102505740 - L1MEc LINE L1 -5483 913 150 250 315 28 42 chr13 17239275 17239418 -102505480 - HAL1b LINE L1 -963 385 245 1369 209 21 78 chr13 17241156 17241543 -102503355 - MLT1A1 LTR MaLR 0 365 1 1985 140 64 3 chr13 17241677 17242020 -102502878 + THE1B LTR MaLR 1 364 0 1850 138 32 11 chr13 17242254 17242537 -102502361 - AluSg SINE Alu -21 289 1 306 338 29 43 chr13 17242641 17242780 -102502118 + MER5A DNA MER1_type 52 188 -1 1117 72 0 0 chr13 17243572 17243711 -102501187 - AluY SINE Alu -17 294 156 243 0 0 0 chr13 17244844 17244871 -102500027 + (T)n Simple_repeat Simple_repeat 1 27 0 318 303 113 21 chr13 17245888 17246126 -102498772 + MIR SINE MIR 3 262 0 2449 69 0 10 chr13 17246549 17246852 -102498046 + AluY SINE Alu 1 300 -11 196 313 15 30 chr13 17247133 17247200 -102497698 + MIR SINE MIR 182 247 -15 304 270 40 43 chr13 17247411 17247616 -102497282 + MIR SINE MIR 8 262 0 201 176 0 0 chr13 17249022 17249056 -102495842 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2136 67 0 39 chr13 17249114 17249399 -102495499 - AluY SINE Alu 0 311 38 189 0 0 0 chr13 17249986 17250007 -102494891 + (TTGG)n Simple_repeat Simple_repeat 4 24 0 1103 243 73 64 chr13 17250038 17250486 -102494412 - MLT1C LTR MaLR -5 462 3 1993 201 8 2 chr13 17250894 17251292 -102493606 + L1PA16 LINE L1 5764 6163 -3 264 178 68 27 chr13 17251298 17251371 -102493527 + L1ME4a LINE L1 5968 6043 -78 201 147 0 0 chr13 17253586 17253620 -102491278 + (CA)n Simple_repeat Simple_repeat 1 34 0 4842 95 28 0 chr13 17253897 17254398 -102490500 - L1PA13 LINE L1 -7 6156 5627 2581 107 0 27 chr13 17254398 17254772 -102490126 + THE1B LTR MaLR 1 364 0 4842 95 28 0 chr13 17254772 17254993 -102489905 - L1PA13 LINE L1 -536 5627 5414 2535 188 13 15 chr13 17255373 17256060 -102488838 - L1M4 LINE L1 -405 6277 5592 689 233 28 40 chr13 17256079 17256332 -102488566 - L1M4 LINE L1 -2191 4453 4204 5091 188 15 20 chr13 17256337 17257911 -102486987 - L1PA16 LINE L1 -5 6864 5302 * 9766 118 17 29 chr13 17257905 17259371 -102485527 + THE1B-int LTR MaLR 133 1580 0 2562 100 5 24 chr13 17259371 17259742 -102485156 + THE1B LTR MaLR 1 364 0 301 170 0 0 chr13 17259753 17259800 -102485098 + L1PA15-16 LINE L1 1112 1158 -5691 * 6378 226 19 8 chr13 17259795 17261221 -102483677 - L1PA16 LINE L1 -5592 1257 5 593 219 103 0 chr13 17261236 17261391 -102483507 - L1M4 LINE L1 -2448 4196 4026 4496 257 73 45 chr13 17261446 17264260 -102480638 - L1M4c LINE L1 -3653 2991 2 330 322 34 0 chr13 17265299 17265417 -102479481 + L2 LINE L2 3192 3313 0 249 331 24 24 chr13 17265614 17265738 -102479160 - MIR SINE MIR -110 152 29 377 314 138 57 chr13 17265870 17266348 -102478550 - MLT1F LTR MaLR -8 534 18 235 255 89 76 chr13 17266422 17266579 -102478319 + MIR SINE MIR 60 218 -44 827 319 88 0 chr13 17267341 17267661 -102477237 - L2 LINE L2 -1646 1668 1321 652 298 42 28 chr13 17267756 17268041 -102476857 + MLT1K LTR MaLR 300 588 0 364 274 61 17 chr13 17268142 17268271 -102476627 + MIR SINE MIR 37 170 -63 360 319 48 24 chr13 17268267 17268433 -102476465 - MIR SINE MIR -30 232 63 * 282 292 22 66 chr13 17268455 17268592 -102476306 - MER94 DNA DNA 0 134 4 1182 280 89 15 chr13 17268592 17268995 -102475903 - LTR16A LTR ERVL -1 449 17 2446 67 0 10 chr13 17269081 17269380 -102475518 - AluY SINE Alu -15 296 1 22 35 0 0 chr13 17269543 17269572 -102475326 + AT_rich Low_complexity Low_complexity 1 29 0 2540 185 55 6 chr13 17270188 17270680 -102474218 + MLT2B1 LTR ERVL 1 516 -4 261 0 0 0 chr13 17270840 17270869 -102474029 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 3386 96 78 166 chr13 17271876 17272630 -102472268 - LTR12 LTR ERV1 0 688 1 668 226 38 47 chr13 17272844 17273079 -102471819 - pTR5 LTR ERV1 -1463 975 743 2286 75 0 40 chr13 17273128 17273449 -102471449 + AluY SINE Alu 1 308 -3 27 49 0 0 chr13 17274725 17274766 -102470132 + AT_rich Low_complexity Low_complexity 1 41 0 201 74 0 0 chr13 17275761 17275788 -102469110 + (T)n Simple_repeat Simple_repeat 1 27 0 249 228 20 129 chr13 17275827 17275928 -102468970 + MER77 LTR ERV1 1 90 -515 2636 182 96 35 chr13 17276741 17277407 -102467491 + MER39 LTR ERV1 1 707 0 367 333 57 13 chr13 17277641 17277800 -102467098 - L2 LINE L2 -329 2984 2819 484 218 0 7 chr13 17277937 17278125 -102466773 + MER58A DNA MER1_type 1 223 -1 1469 204 14 10 chr13 17278484 17278778 -102466120 - AluJb SINE Alu -17 295 1 33 43 0 0 chr13 17279418 17279465 -102465433 + AT_rich Low_complexity Low_complexity 1 47 0 279 54 0 0 chr13 17281661 17281698 -102463200 + (TG)n Simple_repeat Simple_repeat 2 38 0 3758 191 31 22 chr13 17282320 17283892 -102461006 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr13 17283947 17283999 -102460899 + AT_rich Low_complexity Low_complexity 1 52 0 2556 55 0 3 chr13 17284030 17284340 -102460558 - AluY SINE Alu -2 309 1 2825 7 0 0 chr13 17284652 17284960 -102459938 - AluYa5 SINE Alu -3 308 1 21 57 0 0 chr13 17285791 17285826 -102459072 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 17286476 17286506 -102458392 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 17286623 17286661 -102458237 + AT_rich Low_complexity Low_complexity 1 38 0 1935 143 89 8 chr13 17286759 17287131 -102457767 - MSTA LTR MaLR 0 428 27 2344 154 20 0 chr13 17287156 17287553 -102457345 - MSTA-int LTR MaLR 0 1651 1247 666 149 23 17 chr13 17287660 17287834 -102457064 + CT-rich Low_complexity Low_complexity 3 177 0 252 368 40 8 chr13 17287903 17288028 -102456870 - L2 LINE L2 -2 3270 3142 4794 235 61 30 chr13 17288385 17290422 -102454476 - L1M4 LINE L1 -1346 5502 3402 355 276 94 0 chr13 17290427 17290597 -102454301 - L1M4 LINE L1 -3488 3360 3175 2441 188 4 2 chr13 17290662 17291140 -102453758 - L1MA4 LINE L1 -202 6098 5620 586 227 7 13 chr13 17291281 17291435 -102453463 + L1M4 LINE L1 6 158 -6384 9027 189 37 29 chr13 17291472 17292244 -102452654 - L1MA4 LINE L1 -735 5565 4801 2134 97 18 4 chr13 17292244 17292553 -102452345 - AluSg SINE Alu 0 313 1 9027 189 37 29 chr13 17292553 17294329 -102450569 - L1MA4 LINE L1 -1499 4801 2999 579 244 96 10 chr13 17294296 17294599 -102450299 - L1M4 LINE L1 -3687 3161 2833 * 438 271 39 0 chr13 17294711 17294866 -102450032 - L1MB4 LINE L1 0 6180 6020 555 232 60 12 chr13 17294897 17295065 -102449833 - L1M4 LINE L1 -1281 4865 4690 2512 246 71 11 chr13 17295077 17295719 -102449179 - L1MB4 LINE L1 -180 6000 5398 2070 120 0 0 chr13 17295719 17296002 -102448896 - AluSq SINE Alu -28 285 3 2512 246 71 11 chr13 17296002 17296926 -102447972 - L1MB4 LINE L1 -782 5398 4358 1029 260 14 14 chr13 17296923 17297284 -102447614 - L1MB4 LINE L1 -2413 3733 3373 * 2049 115 0 4 chr13 17297859 17298137 -102446761 - AluSq SINE Alu -28 285 9 240 184 0 0 chr13 17298267 17298316 -102446582 + (CA)n Simple_repeat Simple_repeat 1 49 0 538 257 47 65 chr13 17298316 17298530 -102446368 - MIR SINE MIR -17 245 36 251 324 27 47 chr13 17298737 17298885 -102446013 + MIR SINE MIR 117 261 -1 224 228 0 0 chr13 17298896 17298953 -102445945 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 275 195 78 0 chr13 17299036 17299113 -102445785 + L1ME4a LINE L1 6036 6118 -3 1612 210 10 16 chr13 17299155 17299469 -102445429 + AluJo SINE Alu 1 312 0 1962 143 103 137 chr13 17299511 17300104 -102444794 - LTR4 LTR ERV1 0 596 24 243 152 0 0 chr13 17301233 17301279 -102443619 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 668 261 61 0 chr13 17301370 17301535 -102443363 + MIR SINE MIR 16 190 -72 448 194 98 86 chr13 17302036 17302214 -102442684 + MLT1D LTR MaLR 6 193 -289 1268 194 0 48 chr13 17302216 17302489 -102442409 + AluJb SINE Alu 5 264 -48 387 306 99 97 chr13 17302809 17303575 -102441323 - L1M4 LINE L1 -5573 1276 509 448 300 83 106 chr13 17304022 17304955 -102439943 - L1M2 LINE L1 -5456 1393 786 1314 221 47 53 chr13 17306432 17306967 -102437931 + MER67C LTR ERV1 22 514 0 25 65 0 0 chr13 17307244 17307290 -102437608 + AT_rich Low_complexity Low_complexity 1 46 0 253 327 47 0 chr13 17307412 17307519 -102437379 - MIR SINE MIR -71 191 80 372 248 0 19 chr13 17307666 17307771 -102437127 + L1M3e LINE L1 466 568 -6921 412 350 43 12 chr13 17307836 17308090 -102436808 + L1M3e LINE L1 1414 1675 -4890 3816 260 42 15 chr13 17308289 17308854 -102436044 + L1M3e LINE L1 2007 2555 -5010 2587 11 0 0 chr13 17308854 17309136 -102435762 + AluYb8 SINE Alu 33 314 -4 3816 260 42 15 chr13 17309136 17311344 -102433554 + L1M3e LINE L1 2555 4812 -2753 1220 178 4 35 chr13 17311344 17311608 -102433290 + AluJo SINE Alu 87 343 0 291 29 0 0 chr13 17311574 17311773 -102433125 + (GAA)n Simple_repeat Simple_repeat 1 199 0 * 234 128 0 0 chr13 17311767 17311806 -102433092 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 * 4100 196 52 13 chr13 17311810 17312881 -102432017 + L1M3e LINE L1 4929 6041 -1524 7191 17 0 1 chr13 17312886 17313717 -102431181 + L1PA2 LINE L1 5326 6155 0 210 209 0 0 chr13 17315337 17315380 -102429518 - MIR SINE MIR -67 141 99 762 192 114 64 chr13 17316566 17316785 -102428113 + MER46A DNA MER2_type 7 236 0 1789 142 26 33 chr13 17316827 17317130 -102427768 + AluSx SINE Alu 3 303 -9 425 230 70 0 chr13 17318827 17318927 -102425971 + MER5A DNA MER1_type 2 108 -81 10460 43 5 37 chr13 17319121 17320640 -102424258 + SVA Other Other 1 1423 0 247 337 45 11 chr13 17323679 17323768 -102421130 - L2 LINE L2 -56 3216 3125 1571 209 6 3 chr13 17324128 17324444 -102420454 + L1MC2 LINE L1 6027 6343 -1 1920 284 60 40 chr13 17324610 17324713 -102420185 - L2 LINE L2 -784 2530 2430 538 276 74 0 chr13 17324713 17324876 -102420022 + MER96 DNA MER1_type 1 175 0 1920 284 60 40 chr13 17324876 17325543 -102419355 - L2 LINE L2 -884 2430 1745 217 140 35 18 chr13 17325543 17325600 -102419298 + GA-rich Low_complexity Low_complexity 2 59 0 28 48 0 0 chr13 17326284 17326326 -102418572 + AT_rich Low_complexity Low_complexity 1 42 0 207 0 0 0 chr13 17326447 17326470 -102418428 + (GGA)n Simple_repeat Simple_repeat 2 24 0 2239 125 0 0 chr13 17327905 17328200 -102416698 - AluSg SINE Alu -15 295 1 955 155 53 63 chr13 17328415 17328621 -102416277 + L1PA16 LINE L1 5963 6166 0 23 0 0 0 chr13 17329134 17329157 -102415741 + AT_rich Low_complexity Low_complexity 1 23 0 201 258 65 0 chr13 17329617 17329679 -102415219 - MIR3 SINE MIR -23 185 120 526 272 128 64 chr13 17330409 17330814 -102414084 + LTR33A LTR ERVL 1 431 -92 896 310 67 33 chr13 17331250 17331740 -102413158 + LTR33 LTR ERVL 3 509 -12 23 33 0 0 chr13 17333037 17333067 -102411831 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 17333138 17333159 -102411739 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2169 106 0 0 chr13 17333159 17333452 -102411446 - L1PA7 LINE L1 -16 6138 5846 249 304 76 11 chr13 17333734 17333826 -102411072 + L2 LINE L2 3155 3252 -20 200 232 43 0 chr13 17333895 17333964 -102410934 + (CA)n Simple_repeat Simple_repeat 1 72 0 24 53 0 0 chr13 17334006 17334044 -102410854 + AT_rich Low_complexity Low_complexity 1 38 0 1042 225 91 71 chr13 17334319 17334357 -102410541 + MLT1C LTR MaLR 6 42 -425 1684 193 5 63 chr13 17334357 17334696 -102410202 - MLT1A1 LTR MaLR 0 365 49 2061 110 35 21 chr13 17334696 17334986 -102409912 + AluSx SINE Alu 1 294 -18 1684 193 5 63 chr13 17334986 17335029 -102409869 - MLT1A1 LTR MaLR -316 49 5 1042 225 91 71 chr13 17335029 17335443 -102409455 + MLT1C LTR MaLR 42 467 0 5224 230 52 48 chr13 17335618 17337124 -102407774 - MLT1A1-int LTR MaLR -113 1538 28 483 183 148 49 chr13 17337121 17337263 -102407635 + MST-int LTR MaLR 506 661 -990 * 842 231 82 12 chr13 17337306 17337561 -102407337 - MSTA LTR MaLR -61 367 95 920 189 189 20 chr13 17337576 17337820 -102407078 + THE1-int LTR MaLR 907 1191 -389 234 232 18 0 chr13 17337808 17337864 -102407034 - THE1-int LTR MaLR -613 967 911 * 496 179 21 0 chr13 17337958 17338053 -102406845 - MSTA LTR MaLR -331 97 1 1344 208 6 43 chr13 17338053 17338400 -102406498 - MSTA-int LTR MaLR 0 1651 1318 247 250 79 13 chr13 17338407 17338483 -102406415 - MSTA LTR MaLR -273 155 75 405 215 19 37 chr13 17338526 17338633 -102406265 - MSTA LTR MaLR -323 105 1 632 164 9 0 chr13 17338633 17338749 -102406149 - MSTA-int LTR MaLR 0 1651 1535 439 219 10 0 chr13 17338946 17339042 -102405856 - MSTA LTR MaLR -331 97 1 1371 217 6 43 chr13 17339044 17339389 -102405509 - MSTA-int LTR MaLR -2 1649 1318 362 215 0 0 chr13 17339396 17339461 -102405437 - MSTA LTR MaLR -269 159 95 349 253 10 0 chr13 17339564 17339663 -102405235 - MSTA LTR MaLR -328 100 1 5894 219 50 47 chr13 17339663 17341280 -102403618 - MSTA-int LTR MaLR 0 1651 30 357 262 21 41 chr13 17341281 17341426 -102403472 + THE1-int LTR MaLR 467 608 -972 882 239 78 8 chr13 17341463 17341718 -102403180 - MSTA LTR MaLR -61 367 95 915 189 189 20 chr13 17341733 17341977 -102402921 + THE1-int LTR MaLR 907 1191 -389 234 232 18 0 chr13 17341965 17342021 -102402877 - THE1-int LTR MaLR -613 967 911 * 517 168 21 0 chr13 17342115 17342210 -102402688 - MSTA LTR MaLR -331 97 1 1376 219 3 40 chr13 17342210 17342557 -102402341 - MSTA-int LTR MaLR 0 1651 1318 279 256 24 37 chr13 17342564 17342646 -102402252 - MSTA LTR MaLR -273 155 75 431 235 20 0 chr13 17342698 17342796 -102402102 - MSTA LTR MaLR -328 100 1 5749 224 55 39 chr13 17342796 17344388 -102400510 - MSTA-int LTR MaLR 0 1651 34 268 294 37 9 chr13 17344392 17344501 -102400397 + THE1-int LTR MaLR 466 577 -1003 1018 229 67 7 chr13 17344543 17344827 -102400071 - MSTA LTR MaLR -52 376 76 747 179 191 56 chr13 17344831 17345082 -102399816 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 17345070 17345126 -102399772 - THE1-int LTR MaLR -613 967 911 * 3919 93 27 4 chr13 17345197 17345747 -102399151 + LTR6A LTR ERV1 1 563 -1 417 200 21 0 chr13 17345778 17345873 -102399025 - MSTA LTR MaLR -331 97 1 1283 203 46 40 chr13 17345873 17346198 -102398700 - MSTA-int LTR MaLR 0 1651 1325 316 256 51 13 chr13 17346198 17346276 -102398622 - MSTA LTR MaLR -252 176 96 394 224 20 10 chr13 17346349 17346447 -102398451 - MSTA LTR MaLR -329 99 1 386 244 17 0 chr13 17346447 17346562 -102398336 - MSTA-int LTR MaLR 0 1651 1535 * 4640 243 68 25 chr13 17346558 17347860 -102397038 - MSTA-int LTR MaLR -262 1389 32 474 207 164 14 chr13 17347862 17348002 -102396896 + MST-int LTR MaLR 507 667 -984 951 247 52 11 chr13 17348030 17348301 -102396597 - MSTA LTR MaLR -52 376 95 668 228 197 30 chr13 17348319 17348552 -102396346 + THE1-int LTR MaLR 907 1178 -402 263 226 19 0 chr13 17348550 17348603 -102396295 - THE1-int LTR MaLR -613 967 914 * 320 194 29 2 chr13 17348709 17348783 -102396115 - MSTA LTR MaLR -356 76 3 1235 228 33 42 chr13 17348785 17349119 -102395779 - MSTA-int LTR MaLR 0 1651 1321 492 196 21 0 chr13 17349265 17349362 -102395536 - MSTA LTR MaLR -329 99 1 4283 238 77 21 chr13 17349362 17350523 -102394375 - MSTA-int LTR MaLR 0 1651 427 749 234 8 10 chr13 17350521 17350725 -102394173 - MSTA-int LTR MaLR -1269 102 28 * 436 167 213 9 chr13 17350721 17350829 -102394069 + MST-int LTR MaLR 507 636 -1015 * 993 196 72 51 chr13 17350871 17351147 -102393751 - MSTA LTR MaLR -52 376 95 861 191 191 21 chr13 17351156 17351391 -102393507 + THE1-int LTR MaLR 904 1178 -402 258 231 19 0 chr13 17351393 17351445 -102393453 - THE1-int LTR MaLR -617 963 911 3628 113 29 4 chr13 17351516 17352065 -102392833 + LTR6A LTR ERV1 1 563 -1 438 200 21 0 chr13 17352095 17352190 -102392708 - MSTA LTR MaLR -331 97 1 1183 215 39 48 chr13 17352190 17352520 -102392378 - MSTA-int LTR MaLR 0 1651 1325 300 248 124 9 chr13 17352520 17352625 -102392273 - MSTA LTR MaLR -252 176 60 422 247 21 0 chr13 17352674 17352771 -102392127 - MSTA LTR MaLR -329 99 1 6055 229 65 19 chr13 17352771 17354321 -102390577 - MSTA-int LTR MaLR 0 1651 28 591 180 156 10 chr13 17354317 17354468 -102390430 + MST-int LTR MaLR 466 661 -963 * 919 227 81 42 chr13 17354476 17354784 -102390114 - MSTA LTR MaLR -43 385 66 725 229 196 21 chr13 17354788 17355028 -102389870 + THE1-int LTR MaLR 907 1188 -392 239 173 19 39 chr13 17355019 17355071 -102389827 - THE1-int LTR MaLR -613 967 917 * 373 226 11 0 chr13 17355177 17355270 -102389628 - MSTA LTR MaLR -334 94 1 1203 217 16 38 chr13 17355270 17355588 -102389310 - MSTA-int LTR MaLR 0 1651 1341 269 255 138 11 chr13 17355595 17355689 -102389209 - MSTA LTR MaLR -258 170 65 488 198 10 0 chr13 17355741 17355837 -102389061 - MSTA LTR MaLR -331 97 1 633 143 18 0 chr13 17355837 17355949 -102388949 - MSTA-int LTR MaLR 0 1651 1538 1024 244 48 5 chr13 17355983 17356258 -102388640 + MST-int LTR MaLR 829 1191 -544 29 28 0 0 chr13 17356577 17356613 -102388285 + AT_rich Low_complexity Low_complexity 1 36 0 2615 139 59 12 chr13 17357396 17357885 -102387013 - L1MB2 LINE L1 -2 6169 5658 1674 205 0 3 chr13 17358057 17358359 -102386539 + AluJo SINE Alu 1 301 -11 1076 94 6 17 chr13 17358372 17358552 -102386346 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1395 176 45 84 chr13 17358863 17359222 -102385676 - MLT1A1 LTR MaLR 0 365 21 2444 87 10 0 chr13 17359460 17359770 -102385128 - AluSp SINE Alu 0 313 1 2207 110 7 0 chr13 17360008 17360298 -102384600 - AluSq SINE Alu -21 292 1 393 275 18 57 chr13 17360429 17360645 -102384253 - MIR SINE MIR -53 209 1 280 248 40 50 chr13 17360904 17361005 -102383893 + MLT2E LTR ERVL 32 131 -497 770 216 55 31 chr13 17361372 17361626 -102383272 - LTR37B LTR ERV1 0 468 209 363 294 59 26 chr13 17361728 17361942 -102382956 - MIR SINE MIR -26 236 22 1575 88 0 0 chr13 17362190 17362405 -102382493 - L1PA6 LINE L1 0 6154 5940 576 222 33 39 chr13 17362842 17362951 -102381947 + MIR SINE MIR 14 123 -139 4371 117 32 32 chr13 17362951 17363642 -102381256 - LTR8 LTR ERV1 0 691 1 576 222 33 39 chr13 17363642 17363685 -102381213 + MIR SINE MIR 123 165 -97 253 319 0 0 chr13 17366120 17366192 -102378706 + MIR SINE MIR 139 210 -52 1945 193 11 6 chr13 17367184 17367547 -102377351 - MLT1A1 LTR MaLR 0 365 1 874 127 51 23 chr13 17370365 17370673 -102374225 + LTR7 LTR ERV1 1 450 0 1427 209 57 29 chr13 17371355 17371705 -102373193 + MER45B DNA AcHobo 445 804 -236 214 283 88 0 chr13 17371732 17371845 -102373053 + MIR SINE MIR 77 199 -63 363 203 0 0 chr13 17372995 17373064 -102371834 - L2 LINE L2 -3 3310 3242 297 352 31 0 chr13 17373168 17373296 -102371602 - MIR3 SINE MIR -42 166 35 459 35 0 0 chr13 17373703 17373760 -102371138 + (TC)n Simple_repeat Simple_repeat 2 58 0 492 299 56 20 chr13 17374777 17374974 -102369924 - MIR SINE MIR -12 250 47 296 294 76 5 chr13 17375301 17375499 -102369399 + MIR SINE MIR 13 228 -34 25 0 0 0 chr13 17376021 17376046 -102368852 + AT_rich Low_complexity Low_complexity 1 25 0 2503 55 0 0 chr13 17376038 17376327 -102368571 - AluY SINE Alu -22 289 1 1558 57 16 0 chr13 17376391 17376585 -102368313 - BC200 scRNA scRNA -3 197 1 461 292 134 50 chr13 17376768 17376970 -102367928 + MLT1K LTR MaLR 44 262 -326 342 80 0 0 chr13 17376993 17377043 -102367855 + (GA)n Simple_repeat Simple_repeat 1 50 0 480 18 0 0 chr13 17377043 17377100 -102367798 + (TG)n Simple_repeat Simple_repeat 1 57 0 325 216 118 10 chr13 17377889 17377991 -102366907 + HsTC2c DNA Tc2 615 727 -2 25 0 0 0 chr13 17378249 17378274 -102366624 + AT_rich Low_complexity Low_complexity 1 25 0 338 341 28 23 chr13 17379274 17379450 -102365448 + MIR3 SINE MIR 16 192 -16 777 200 36 12 chr13 17379470 17379635 -102365263 - MER45A DNA AcHobo 0 178 10 313 317 32 16 chr13 17380570 17380693 -102364205 + MIR SINE MIR 19 143 -65 2222 121 0 3 chr13 17380776 17381081 -102363817 + AluSx SINE Alu 2 305 -7 1973 119 31 10 chr13 17381111 17381405 -102363493 - AluSq SINE Alu -13 300 1 571 257 14 0 chr13 17384192 17384340 -102360558 + MIR SINE MIR 113 262 0 486 343 94 4 chr13 17384446 17384552 -102360346 + MIR SINE MIR 1 96 -166 7315 69 51 1 chr13 17384552 17385475 -102359423 + LTR5 LTR ERVK 1 969 0 486 343 94 4 chr13 17385475 17385601 -102359297 + MIR SINE MIR 96 254 -8 7602 27 1 0 chr13 17387074 17387957 -102356941 - L1PA3 LINE L1 0 6155 5272 2228 98 0 7 chr13 17390599 17390895 -102354003 - AluSg1 SINE Alu -15 294 1 288 137 0 0 chr13 17391016 17391067 -102353831 + (TG)n Simple_repeat Simple_repeat 1 51 0 37 39 0 0 chr13 17392202 17392253 -102352645 + AT_rich Low_complexity Low_complexity 1 51 0 23 78 0 0 chr13 17392822 17392873 -102352025 + AT_rich Low_complexity Low_complexity 1 51 0 1325 209 11 28 chr13 17394212 17394499 -102350399 - AluJo SINE Alu -30 282 1 1364 168 59 43 chr13 17395253 17395554 -102349344 - MSTB LTR MaLR -4 422 117 1027 156 156 0 chr13 17395554 17395656 -102349242 - MER30 DNA MER1_type 0 230 145 480 35 0 0 chr13 17395656 17395714 -102349184 + (TG)n Simple_repeat Simple_repeat 2 59 0 1027 156 156 0 chr13 17395714 17395810 -102349088 - MER30 DNA MER1_type -85 145 1 773 136 16 16 chr13 17395810 17395934 -102348964 - MSTB LTR MaLR -302 124 1 1544 275 37 5 chr13 17396579 17396986 -102347912 + MER70A LTR ERVL 4 423 -49 3288 132 20 2 chr13 17397738 17398246 -102346652 + L1PB1 LINE L1 5631 6147 -4 24 53 0 0 chr13 17399938 17399976 -102344922 + AT_rich Low_complexity Low_complexity 1 38 0 1273 191 52 42 chr13 17399976 17400264 -102344634 - AluJo SINE Alu -11 291 1 21 89 0 0 chr13 17400658 17400714 -102344184 + AT_rich Low_complexity Low_complexity 1 56 0 211 309 0 24 chr13 17401109 17401193 -102343705 - MIR SINE MIR -20 242 161 255 79 0 0 chr13 17401206 17401244 -102343654 + (CA)n Simple_repeat Simple_repeat 1 38 0 509 153 276 0 chr13 17401311 17401409 -102343489 + FLAM_C SINE Alu 2 126 -17 675 283 57 69 chr13 17401653 17402090 -102342808 - MLT1K LTR MaLR -2 586 76 262 280 150 0 chr13 17402498 17402598 -102342300 + MIR SINE MIR 36 150 -58 1537 194 182 5 chr13 17402606 17402997 -102341901 - LTR46 LTR ERV1 0 460 1 311 330 112 8 chr13 17403039 17403306 -102341592 - L2 LINE L2 -24 3289 2995 478 230 143 14 chr13 17404182 17404399 -102340499 + LTR33 LTR ERVL 277 521 0 384 330 133 0 chr13 17404688 17404906 -102339992 + MIR SINE MIR 15 261 -1 333 345 7 0 chr13 17405050 17405189 -102339709 + MIR SINE MIR 23 162 -100 1081 264 25 6 chr13 17405291 17405613 -102339285 - LTR16C LTR ERVL -29 462 135 214 260 104 21 chr13 17406004 17406100 -102338798 - MIR SINE MIR -60 148 45 598 164 0 4 chr13 17410286 17410454 -102334444 + HSAT5 Satellite Satellite 1 167 -3 305 182 34 57 chr13 17410674 17410762 -102334136 + HSAT5 Satellite Satellite 1 86 0 334 218 12 6 chr13 17410993 17411099 -102333799 + HSAT5 Satellite Satellite 1 106 -7 * 472 272 26 9 chr13 17411083 17411235 -102333663 - MSTA LTR MaLR -141 285 133 738 242 189 20 chr13 17411282 17411526 -102333372 + THE1-int LTR MaLR 907 1191 -389 270 184 21 0 chr13 17411514 17411570 -102333328 - THE1-int LTR MaLR -613 967 921 * 359 178 89 40 chr13 17411635 17411736 -102333162 - MSTA LTR MaLR -322 106 1 1113 221 92 20 chr13 17411736 17412039 -102332859 - MSTA-int LTR MaLR 0 1651 1327 377 204 126 10 chr13 17412047 17412150 -102332748 - MSTA LTR MaLR -257 171 57 457 204 20 10 chr13 17412195 17412293 -102332605 - MSTA LTR MaLR -329 99 1 6063 222 52 41 chr13 17412293 17413899 -102330999 - MSTA-int LTR MaLR 0 1651 28 387 214 150 36 chr13 17413896 17414036 -102330862 + MST-int LTR MaLR 506 661 -990 * 926 197 70 13 chr13 17414078 17414306 -102330592 - MSTA LTR MaLR -60 368 128 918 193 189 20 chr13 17414347 17414591 -102330307 + THE1-int LTR MaLR 907 1191 -389 257 214 18 0 chr13 17414579 17414635 -102330263 - THE1-int LTR MaLR -613 967 911 * 476 189 21 0 chr13 17414729 17414824 -102330074 - MSTA LTR MaLR -331 97 1 1423 204 3 43 chr13 17414824 17415172 -102329726 - MSTA-int LTR MaLR 0 1651 1318 309 226 32 0 chr13 17415179 17415241 -102329657 - MSTA LTR MaLR -269 159 96 469 214 20 0 chr13 17415317 17415415 -102329483 - MSTA LTR MaLR -328 100 1 5999 221 53 38 chr13 17415415 17417009 -102327889 - MSTA-int LTR MaLR 0 1651 34 317 266 37 9 chr13 17417013 17417122 -102327776 + THE1-int LTR MaLR 466 577 -1003 969 212 66 36 chr13 17417164 17417438 -102327460 - MSTA LTR MaLR -52 376 95 749 187 191 56 chr13 17417450 17417701 -102327197 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 17417689 17417745 -102327153 - THE1-int LTR MaLR -613 967 911 * 3764 106 29 4 chr13 17417866 17418414 -102326484 + LTR6A LTR ERV1 1 562 -2 477 157 28 46 chr13 17418433 17418541 -102326357 - MSTA LTR MaLR -322 106 1 1327 203 43 37 chr13 17418541 17418866 -102326032 - MSTA-int LTR MaLR 0 1651 1325 272 226 88 88 chr13 17418866 17418968 -102325930 - MSTA LTR MaLR -252 176 75 421 214 20 10 chr13 17419022 17419120 -102325778 - MSTA LTR MaLR -329 99 1 475 209 9 0 chr13 17419120 17419230 -102325668 - MSTA-int LTR MaLR 0 1651 1541 4892 236 67 25 chr13 17419233 17420541 -102324357 - MSTA-int LTR MaLR -263 1388 26 458 227 167 8 chr13 17420537 17420669 -102324229 + MST-int LTR MaLR 507 659 -992 * 1023 236 67 7 chr13 17420705 17420989 -102323909 - MSTA LTR MaLR -52 376 76 648 223 197 30 chr13 17420993 17421226 -102323672 + THE1-int LTR MaLR 907 1178 -402 269 228 18 0 chr13 17421224 17421281 -102323617 - THE1-int LTR MaLR -613 967 910 * 249 57 0 0 chr13 17421396 17421431 -102323467 + (CA)n Simple_repeat Simple_repeat 2 36 0 509 153 276 0 chr13 17421498 17421596 -102323302 + FLAM_C SINE Alu 2 126 -17 320 199 39 20 chr13 17421664 17421765 -102323133 - MSTA LTR MaLR -323 103 3 1209 219 40 43 chr13 17421767 17422095 -102322803 - MSTA-int LTR MaLR 0 1651 1325 237 263 50 25 chr13 17422095 17422175 -102322723 - MSTA LTR MaLR -252 176 95 497 214 19 0 chr13 17422243 17422346 -102322552 - MSTA LTR MaLR -323 105 1 4516 228 75 26 chr13 17422346 17423514 -102321384 - MSTA-int LTR MaLR 0 1651 427 742 235 8 10 chr13 17423512 17423716 -102321182 - MSTA-int LTR MaLR -1270 101 28 * 561 181 173 8 chr13 17423712 17423845 -102321053 + MST-int LTR MaLR 507 661 -990 * 893 248 52 42 chr13 17423871 17424178 -102320720 - MSTA LTR MaLR -43 385 76 408 239 11 0 chr13 17424182 17424270 -102320628 + THE1-int LTR MaLR 907 995 -585 2059 125 3 11 chr13 17424477 17424788 -102320110 - AluSp SINE Alu 0 309 1 22 0 0 0 chr13 17425126 17425148 -102319750 + AT_rich Low_complexity Low_complexity 1 22 0 1256 43 0 19 chr13 17425148 17425310 -102319588 - L1PA4 LINE L1 -1 6154 5996 965 136 82 0 chr13 17425339 17425486 -102319412 - AluSq SINE Alu -143 170 12 2149 118 10 0 chr13 17425511 17425816 -102319082 - AluY SINE Alu -3 308 1 333 281 52 37 chr13 17425817 17425952 -102318946 - L1M4 LINE L1 -3540 2842 2706 314 318 9 0 chr13 17426109 17426216 -102318682 - L1M4 LINE L1 -3773 2609 2502 579 292 163 29 chr13 17426227 17427259 -102317639 - L1M4 LINE L1 -3894 2490 1311 1212 239 21 7 chr13 17427259 17427543 -102317355 - AluJo SINE Alu -24 288 1 579 292 163 29 chr13 17427543 17427571 -102317327 - L1M4 LINE L1 -5073 1311 1288 336 316 143 24 chr13 17427573 17427909 -102316989 - L1M4 LINE L1 -4862 1451 1076 829 168 37 11 chr13 17432218 17432409 -102312489 - L1MA3 LINE L1 0 6305 6110 1934 159 0 7 chr13 17433043 17433352 -102311546 - AluSg SINE Alu -3 307 1 2054 136 0 0 chr13 17434041 17434328 -102310570 + AluSc SINE Alu 7 293 -16 548 218 173 4 chr13 17435072 17435297 -102309601 - L1MA8 LINE L1 -4 6287 6025 4062 231 80 30 chr13 17435308 17437050 -102307848 - L1MA8 LINE L1 -359 5941 4081 2121 107 3 0 chr13 17437050 17437340 -102307558 + AluY SINE Alu 1 291 -20 4062 231 80 30 chr13 17437340 17437535 -102307363 - L1MA8 LINE L1 -2219 4081 3897 5205 275 48 15 chr13 17437546 17438999 -102305899 + L1 LINE L1 3310 4842 -1304 270 0 0 0 chr13 17438999 17439029 -102305869 + (CA)n Simple_repeat Simple_repeat 2 31 0 5205 275 48 15 chr13 17439029 17439485 -102305413 + L1 LINE L1 4842 5282 -864 3733 202 35 18 chr13 17439488 17440310 -102304588 + L1PA16 LINE L1 5317 6152 -14 628 207 17 0 chr13 17440519 17440635 -102304263 - MER30 DNA MER1_type 0 230 113 646 198 17 0 chr13 17440653 17440769 -102304129 - MER30 DNA MER1_type 0 230 113 663 190 17 0 chr13 17440787 17440903 -102303995 - MER30 DNA MER1_type 0 230 113 663 190 17 0 chr13 17440921 17441037 -102303861 - MER30 DNA MER1_type 0 230 113 633 207 17 0 chr13 17441055 17441171 -102303727 - MER30 DNA MER1_type 0 230 113 646 198 17 0 chr13 17441189 17441305 -102303593 - MER30 DNA MER1_type 0 230 113 1000 160 150 0 chr13 17441323 17441523 -102303375 - MER30 DNA MER1_type 0 230 1 24 67 0 0 chr13 17442170 17442215 -102302683 + AT_rich Low_complexity Low_complexity 1 45 0 1189 105 6 0 chr13 17442535 17442697 -102302201 - AluSx SINE Alu -137 175 13 2284 81 0 3 chr13 17444035 17444333 -102300565 + AluY SINE Alu 1 297 -14 21 36 0 0 chr13 17444536 17444564 -102300334 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 17444704 17444725 -102300173 + AT_rich Low_complexity Low_complexity 1 21 0 3441 40 0 5 chr13 17444840 17445269 -102299629 - L1P LINE L1 -942 5204 4778 2805 21 0 0 chr13 17445269 17445596 -102299302 + L1PA2 LINE L1 5829 6155 0 2045 122 0 3 chr13 17445940 17446227 -102298671 - AluSx SINE Alu -22 290 5 21 71 0 0 chr13 17446333 17446375 -102298523 + AT_rich Low_complexity Low_complexity 1 42 0 7816 93 4 1 chr13 17446431 17447495 -102297403 + MER11C LTR ERVK 1 1067 -4 1950 134 3 10 chr13 17448062 17448361 -102296537 - AluSq SINE Alu -16 297 1 310 173 0 0 chr13 17448473 17448525 -102296373 - MER51D LTR ERV1 -106 551 500 6439 155 20 10 chr13 17449604 17450750 -102294148 - THE1C-int LTR MaLR -158 1422 215 359 215 0 0 chr13 17450750 17450815 -102294083 - THE1C-int LTR MaLR -1515 65 1 1706 151 48 43 chr13 17450815 17451187 -102293711 - THE1C LTR MaLR 0 375 2 2129 103 0 28 chr13 17451697 17452017 -102292881 - AluY SINE Alu 0 311 1 796 244 72 9 chr13 17452881 17453102 -102291796 + MER46A DNA MER2_type 1 235 -1 548 252 47 65 chr13 17453215 17453429 -102291469 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 17453429 17453478 -102291420 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 17453490 17453511 -102291387 + AT_rich Low_complexity Low_complexity 1 21 0 1601 189 0 3 chr13 17453602 17453888 -102291010 + AluSq SINE Alu 1 285 -28 643 268 54 20 chr13 17454450 17454804 -102290094 + L1 LINE L1 3360 3725 -2421 475 277 19 19 chr13 17455225 17455438 -102289460 + L1M4 LINE L1 3275 3487 -2659 1530 173 74 28 chr13 17455513 17455865 -102289033 + THE1C LTR MaLR 5 372 -3 9655 119 31 44 chr13 17455868 17457454 -102287444 + THE1C-int LTR MaLR 1 1566 -14 6079 218 25 6 chr13 17457554 17459019 -102285879 - L1 LINE L1 -2249 3897 2405 1313 77 0 0 chr13 17459019 17459189 -102285709 - AluY SINE Alu -6 305 136 634 115 19 19 chr13 17459189 17459293 -102285605 + LTR1B LTR ERV1 723 826 0 478 190 111 0 chr13 17459293 17459416 -102285482 + MER67B LTR ERV1 60 156 -358 3792 154 82 11 chr13 17459415 17460109 -102284789 - LTR1B LTR ERV1 -83 743 1 301 263 110 25 chr13 17460109 17460227 -102284671 - MER67B LTR ERV1 -502 159 32 1928 129 16 19 chr13 17460635 17460946 -102283952 - AluY SINE Alu -1 310 1 1890 161 0 0 chr13 17461301 17461600 -102283298 + AluSx SINE Alu 1 299 -13 548 331 60 40 chr13 17463679 17464078 -102280820 - LTR33 LTR ERVL -114 407 1 2035 177 36 28 chr13 17464298 17464843 -102280055 + MLT2A2 LTR ERVL 1 551 -3 997 278 163 33 chr13 17464846 17465763 -102279135 - HAL1b LINE L1 -105 1243 208 2277 38 0 0 chr13 17465896 17466159 -102278739 + AluY SINE Alu 1 263 -48 230 0 33 0 chr13 17466173 17466203 -102278695 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 233 337 127 17 chr13 17466396 17466577 -102278321 + L3 LINE CR1 327 527 -1050 30 0 0 0 chr13 17466584 17466614 -102278284 + AT_rich Low_complexity Low_complexity 1 30 0 606 370 129 23 chr13 17466822 17467594 -102277304 + L3 LINE CR1 623 1476 -101 410 319 145 0 chr13 17467733 17467899 -102276999 + MIR SINE MIR 39 228 -34 317 146 0 36 chr13 17468353 17468408 -102276490 + MER39 LTR ERV1 655 707 0 203 169 0 85 chr13 17468589 17468648 -102276250 + CT-rich Low_complexity Low_complexity 1 54 0 321 307 144 23 chr13 17468701 17468916 -102275982 - HAL1 LINE L1 0 2507 2267 238 312 8 56 chr13 17468964 17469089 -102275809 + L2 LINE L2 3195 3313 0 774 230 8 60 chr13 17469141 17469376 -102275522 - HAL1 LINE L1 -754 1753 1531 867 309 77 14 chr13 17469377 17469949 -102274949 - HAL1 LINE L1 -868 1639 1032 402 269 123 15 chr13 17469935 17470203 -102274695 - HAL1 LINE L1 -1240 1267 971 * 2054 103 0 7 chr13 17471206 17471508 -102273390 + AluY SINE Alu 1 300 0 1146 254 38 130 chr13 17471556 17472110 -102272788 + MLT1E2 LTR MaLR 1 503 -2 2000 128 0 0 chr13 17472116 17472537 -102272361 + AluSq SINE Alu 3 423 0 321 26 0 0 chr13 17474034 17474072 -102270826 + (TG)n Simple_repeat Simple_repeat 1 38 0 33 80 0 0 chr13 17475520 17475595 -102269303 + AT_rich Low_complexity Low_complexity 1 75 0 1890 121 7 11 chr13 17476684 17476965 -102267933 - AluSx SINE Alu -32 280 1 851 125 0 0 chr13 17476990 17477118 -102267780 - AluSg/x SINE Alu -5 305 178 23 0 0 0 chr13 17477552 17477575 -102267323 + AT_rich Low_complexity Low_complexity 1 23 0 2192 108 15 6 chr13 17477575 17477917 -102266981 - L1PB1 LINE L1 -3 6148 5804 2515 219 48 76 chr13 17477979 17478769 -102266129 - L1MB1 LINE L1 0 6168 5401 1767 232 37 34 chr13 17478771 17479120 -102265778 + L1M4 LINE L1 4803 5149 -997 1817 118 17 37 chr13 17479120 17479416 -102265482 - AluSc SINE Alu -14 295 6 2168 128 0 10 chr13 17479421 17479734 -102265164 - AluSx SINE Alu -2 310 1 1767 232 37 34 chr13 17479734 17479946 -102264952 + L1M4 LINE L1 5152 5372 -774 861 248 30 52 chr13 17479947 17480263 -102264635 - L1MEc LINE L1 -3649 3292 3028 2517 52 0 0 chr13 17480263 17480569 -102264329 - AluY SINE Alu -5 306 1 861 248 30 52 chr13 17480569 17480734 -102264164 - L1MEc LINE L1 -3913 3028 2861 1876 285 92 69 chr13 17480735 17481883 -102263015 - L1MEc LINE L1 -5231 1192 19 2401 60 0 3 chr13 17482281 17482581 -102262317 + AluY SINE Alu 2 300 -11 2249 195 45 10 chr13 17482653 17483145 -102261753 - LTR22 LTR ERVK 0 509 1 221 209 136 64 chr13 17483604 17483714 -102261184 - MIR SINE MIR -56 206 89 223 269 166 28 chr13 17484640 17484785 -102260113 + MIR SINE MIR 51 215 -47 2388 75 0 0 chr13 17484967 17485261 -102259637 - AluY SINE Alu -17 294 1 191 258 75 118 chr13 17485356 17485449 -102259449 - L3 LINE CR1 -50 1527 1439 3430 72 13 4 chr13 17485901 17486374 -102258524 + MER11A LTR ERVK 790 1266 0 7131 191 6 39 chr13 17486376 17487000 -102257898 - L1P LINE L1 -1226 4920 4277 1684 191 3 0 chr13 17487000 17487293 -102257605 - AluJb SINE Alu -18 294 1 7131 191 6 39 chr13 17487293 17487776 -102257122 - L1P LINE L1 -1869 4277 3876 2049 130 3 3 chr13 17487776 17488083 -102256815 - AluSc SINE Alu -2 307 1 7131 191 6 39 chr13 17488083 17488537 -102256361 - L1P LINE L1 -2270 3876 3409 513 301 57 66 chr13 17488559 17488894 -102256004 - MLT1H1 LTR MaLR -204 351 20 2411 74 0 0 chr13 17488895 17489191 -102255707 - AluY SINE Alu -15 296 1 289 219 112 17 chr13 17489198 17489376 -102255522 + L1ME LINE L1 5677 5866 -312 4199 184 11 25 chr13 17489407 17490219 -102254679 - L1MA8 LINE L1 -172 6119 5322 1932 149 10 0 chr13 17490219 17490515 -102254383 - AluSq SINE Alu -14 299 1 4199 184 11 25 chr13 17490515 17490722 -102254176 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr13 17491265 17491321 -102253577 + AT_rich Low_complexity Low_complexity 1 56 0 336 48 0 0 chr13 17491803 17491845 -102253053 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 139 0 0 chr13 17492441 17492477 -102252421 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1823 196 52 28 chr13 17492598 17492985 -102251913 - MSTD LTR MaLR 0 396 1 327 258 0 86 chr13 17493102 17493230 -102251668 + MER5B DNA MER1_type 19 135 -43 286 325 94 49 chr13 17493495 17493698 -102251200 - MIR SINE MIR -3 259 48 2343 57 0 0 chr13 17494815 17495143 -102249755 + AluY SINE Alu 1 328 0 240 35 0 0 chr13 17495953 17495982 -102248916 + (CA)n Simple_repeat Simple_repeat 2 30 0 1724 106 4 0 chr13 17496526 17496762 -102248136 - AluSx SINE Alu -16 296 60 3183 69 7 0 chr13 17496762 17497196 -102247702 - L1PA8 LINE L1 -2 6170 5734 1726 129 7 41 chr13 17497584 17497878 -102247020 - AluSx SINE Alu -18 294 11 26 30 0 0 chr13 17498079 17498112 -102246786 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr13 17499099 17499140 -102245758 + AT_rich Low_complexity Low_complexity 1 41 0 2175 114 3 0 chr13 17499262 17499559 -102245339 + AluSq SINE Alu 1 298 -15 617 316 43 8 chr13 17499772 17500028 -102244870 - LTR16A1 LTR ERVL -20 437 173 21 0 0 0 chr13 17500778 17500799 -102244099 + AT_rich Low_complexity Low_complexity 1 21 0 273 242 0 0 chr13 17500817 17500879 -102244019 - MIR SINE MIR -14 248 187 2123 130 0 0 chr13 17501831 17502124 -102242774 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr13 17502129 17502151 -102242747 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 17502186 17502219 -102242679 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr13 17503234 17503264 -102241634 + (CA)n Simple_repeat Simple_repeat 1 30 0 628 294 43 7 chr13 17504095 17504371 -102240527 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr13 17504573 17504614 -102240284 + AT_rich Low_complexity Low_complexity 1 41 0 47 73 0 0 chr13 17505105 17505201 -102239697 + AT_rich Low_complexity Low_complexity 1 96 0 282 29 0 0 chr13 17505319 17505354 -102239544 + (GA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr13 17505806 17505829 -102239069 + AT_rich Low_complexity Low_complexity 1 23 0 225 259 0 0 chr13 17506025 17506083 -102238815 + L1MC4 LINE L1 6659 6716 -1326 1172 85 0 0 chr13 17506199 17506352 -102238546 + AluSp SINE Alu 130 282 -31 180 0 0 0 chr13 17506359 17506379 -102238519 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2093 98 35 0 chr13 17506390 17506676 -102238222 - AluSp SINE Alu -17 296 1 875 255 90 17 chr13 17506688 17507045 -102237853 + Charlie2 DNA MER1_type 2439 2821 -41 434 335 79 32 chr13 17507513 17507955 -102236943 - L2 LINE L2 -624 2690 2228 5135 159 42 29 chr13 17509340 17511035 -102233863 + L1MA5 LINE L1 4553 6271 -29 9045 117 5 1 chr13 17511035 17512317 -102232581 - HSMAR1 DNA Mariner 0 1287 1 5135 159 42 29 chr13 17512317 17512346 -102232552 + L1MA5 LINE L1 6271 6298 -2 1049 201 34 8 chr13 17512836 17513075 -102231823 - Zaphod DNA AcHobo -8 4023 3779 219 276 102 31 chr13 17514444 17514571 -102230327 - L2 LINE L2 -1 3271 3136 36 0 0 0 chr13 17514805 17514841 -102230057 + AT_rich Low_complexity Low_complexity 1 36 0 687 266 6 0 chr13 17516605 17516778 -102228120 - FRAM SINE Alu -5 171 1 985 254 28 43 chr13 17517011 17517508 -102227390 + MLT1H1 LTR MaLR 1 595 0 186 43 0 0 chr13 17517662 17517685 -102227213 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 198 66 66 chr13 17517686 17517777 -102227121 - LTR66 LTR ERVL -176 434 344 219 139 0 0 chr13 17518144 17518180 -102226718 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 44 0 0 chr13 17518746 17518791 -102226107 + AT_rich Low_complexity Low_complexity 1 45 0 26 88 0 0 chr13 17519330 17519398 -102225500 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 53 chr13 17519993 17520010 -102224888 + AT_rich Low_complexity Low_complexity 1 17 -19 2002 124 3 20 chr13 17520010 17520316 -102224582 - AluSq SINE Alu -12 301 1 23 0 0 53 chr13 17520316 17520336 -102224562 + AT_rich Low_complexity Low_complexity 17 36 0 282 341 11 0 chr13 17520874 17520962 -102223936 + L2 LINE L2 3223 3311 -2 707 244 311 28 chr13 17521047 17521436 -102223462 + L2 LINE L2 2321 2819 -495 1220 329 45 11 chr13 17521591 17522053 -102222845 + L2 LINE L2 2815 3292 -21 2189 104 3 0 chr13 17522057 17522345 -102222553 + AluSc SINE Alu 5 293 -16 2234 132 5 27 chr13 17523440 17523812 -102221086 - THE1B LTR MaLR 0 364 1 209 271 86 0 chr13 17523872 17523942 -102220956 - MIR SINE MIR 0 262 187 418 291 95 0 chr13 17524234 17524382 -102220516 - MIR SINE MIR -17 245 84 26 0 0 0 chr13 17524502 17524528 -102220370 + AT_rich Low_complexity Low_complexity 1 26 0 189 147 0 0 chr13 17526946 17526980 -102217918 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 271 43 0 43 chr13 17527065 17527112 -102217786 + (TTG)n Simple_repeat Simple_repeat 1 45 0 210 143 0 0 chr13 17527325 17527360 -102217538 + (T)n Simple_repeat Simple_repeat 1 35 0 248 172 0 16 chr13 17528903 17528967 -102215931 + (CA)n Simple_repeat Simple_repeat 2 64 0 336 24 0 0 chr13 17529026 17529067 -102215831 + (TG)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr13 17529855 17529889 -102215009 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2396 142 37 40 chr13 17529933 17530362 -102214536 + MSTA LTR MaLR 1 428 0 208 158 35 18 chr13 17531367 17531424 -102213474 + T-rich Low_complexity Low_complexity 2 59 0 196 325 88 6 chr13 17531492 17531625 -102213273 + MIR SINE MIR 8 145 -63 1488 208 0 0 chr13 17533841 17534115 -102210783 + AluJo SINE Alu 30 303 -9 590 86 0 0 chr13 17534118 17534199 -102210699 + MER72 LTR ERV1 642 722 0 180 352 32 48 chr13 17534609 17534734 -102210164 + MER5A DNA MER1_type 30 152 -37 257 235 47 0 chr13 17535544 17535629 -102209269 + L1MC4 LINE L1 6614 6702 -1340 1488 170 123 62 chr13 17535655 17535996 -102208902 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr13 17536545 17536573 -102208325 + (CA)n Simple_repeat Simple_repeat 1 28 0 4972 187 73 55 chr13 17537153 17538664 -102206234 - MER52A LTR ERV1 0 1755 1 2388 70 0 10 chr13 17539315 17539617 -102205281 - AluY SINE Alu -12 299 1 435 87 0 0 chr13 17539633 17539702 -102205196 + (CA)n Simple_repeat Simple_repeat 2 70 0 285 204 0 0 chr13 17539702 17539746 -102205152 - FAM SINE Alu -69 106 63 2039 116 0 3 chr13 17539872 17540156 -102204742 + AluSq SINE Alu 1 283 -30 2469 188 112 65 chr13 17540617 17540709 -102204189 + L1MA9 LINE L1 5519 5605 -707 1867 158 7 0 chr13 17540709 17541000 -102203898 + AluSx SINE Alu 1 293 -19 2469 188 112 65 chr13 17541000 17541631 -102203267 + L1MA9 LINE L1 5605 6276 -36 733 191 0 22 chr13 17541986 17542122 -102202776 + AluJo/FLAM SINE Alu 1 133 -179 360 194 0 0 chr13 17542123 17542190 -102202708 + AluJ/FRAM SINE Alu 228 294 -8 231 189 0 0 chr13 17542964 17543001 -102201897 + 5S rRNA rRNA 2 38 -83 709 259 121 17 chr13 17543006 17543444 -102201454 + L2 LINE L2 2413 2957 -357 347 309 39 34 chr13 17543465 17543747 -102201151 - MLT1J2 LTR MaLR -14 436 84 2131 109 7 0 chr13 17543935 17544218 -102200680 - AluSx SINE Alu -27 285 1 405 316 108 58 chr13 17544222 17544602 -102200296 + MLT1J2 LTR MaLR 33 431 -19 197 290 9 37 chr13 17544612 17544719 -102200179 + L2 LINE L2 3085 3188 -125 829 251 23 32 chr13 17544729 17544948 -102199950 + MER58A DNA MER1_type 2 218 -6 523 252 16 8 chr13 17544955 17545078 -102199820 + L2 LINE L2 3190 3313 0 958 233 118 76 chr13 17545095 17545580 -102199318 + MLT1D LTR MaLR 1 505 0 401 293 115 6 chr13 17546166 17546340 -102198558 + MLT1L LTR MaLR 412 604 -11 24 32 0 0 chr13 17546805 17546836 -102198062 + AT_rich Low_complexity Low_complexity 1 31 0 305 216 108 29 chr13 17547625 17547727 -102197171 + MLT1A1 LTR MaLR 20 129 -236 1188 274 62 32 chr13 17547857 17548441 -102196457 - HAL1b LINE L1 -736 612 12 447 277 19 19 chr13 17548724 17548937 -102195961 + L1MC3 LINE L1 3275 3487 -2659 1547 173 74 28 chr13 17549012 17549364 -102195534 + THE1C LTR MaLR 5 372 -3 7775 129 35 53 chr13 17549367 17550705 -102194193 + THE1C-int LTR MaLR 1 1314 -266 339 49 0 0 chr13 17550705 17550746 -102194152 - MLT2A2 LTR ERVL 0 520 480 216 0 0 0 chr13 17550747 17550771 -102194127 + (TA)n Simple_repeat Simple_repeat 2 25 0 2415 89 3 0 chr13 17550775 17551088 -102193810 - MLT2A2 LTR ERVL -139 314 1 41267 95 11 8 chr13 17551088 17556721 -102188177 - HERVL-A2-A2 LTR ERVL 0 5654 1 3156 107 16 7 chr13 17556721 17557170 -102187728 - MLT2A2 LTR ERVL 0 453 1 1702 119 15 4 chr13 17557170 17557438 -102187460 + THE1C-int LTR MaLR 1310 1580 0 1582 161 79 37 chr13 17557440 17557795 -102187103 + THE1C LTR MaLR 3 372 -3 351 0 0 0 chr13 17557795 17557834 -102187064 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 700 14 88 7 chr13 17557848 17557995 -102186903 + (TA)n Simple_repeat Simple_repeat 2 160 0 1822 229 76 19 chr13 17557995 17558427 -102186471 - MLT2B1 LTR ERVL -63 457 1 4409 186 21 10 chr13 17558469 17559295 -102185603 - ERVL-B1 LTR ERVL -235 5529 4695 1408 285 71 7 chr13 17559291 17559830 -102185068 - ERVL-B1 LTR ERVL -5084 591 5 * 1078 243 100 27 chr13 17559834 17560247 -102184651 - MLT2B1 LTR ERVL 0 464 1 4490 213 74 75 chr13 17560291 17562295 -102182603 + L1MC3 LINE L1 3530 4671 -1475 814 118 0 0 chr13 17562295 17562434 -102182464 - AluY SINE Alu 0 310 172 4490 213 74 75 chr13 17562434 17563167 -102181731 + L1MC3 LINE L1 4671 5403 -743 1362 219 19 41 chr13 17563171 17563490 -102181408 + MSTD LTR MaLR 84 395 -1 445 98 12 12 chr13 17563491 17563573 -102181325 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2227 140 5 27 chr13 17564619 17564991 -102179907 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr13 17566257 17566328 -102178570 + AT_rich Low_complexity Low_complexity 1 71 0 1301 78 0 31 chr13 17566419 17566610 -102178288 + L1PA8 LINE L1 5987 6171 -1 204 179 0 0 chr13 17566907 17566946 -102177952 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 199 93 47 0 chr13 17567562 17567605 -102177293 + (TA)n Simple_repeat Simple_repeat 1 45 0 277 322 30 10 chr13 17567646 17567756 -102177142 - MIR SINE MIR -63 145 38 21 0 0 0 chr13 17567869 17567890 -102177008 + AT_rich Low_complexity Low_complexity 1 21 0 196 359 142 0 chr13 17568952 17569058 -102175840 + MIR SINE MIR 17 137 -125 25 0 0 0 chr13 17569144 17569169 -102175729 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr13 17569228 17569257 -102175641 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 17569281 17569310 -102175588 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr13 17569635 17569663 -102175235 + (T)n Simple_repeat Simple_repeat 1 28 0 4197 189 42 9 chr13 17570131 17570193 -102174705 - L1MC2 LINE L1 -6 6338 6280 2329 87 7 0 chr13 17570193 17570492 -102174406 + AluY SINE Alu 1 301 -10 4197 189 42 9 chr13 17570492 17571325 -102173573 - L1MC2 LINE L1 -64 6280 5413 2006 105 36 0 chr13 17571334 17571639 -102173259 - L1PA16 LINE L1 -9 6157 5842 715 137 86 0 chr13 17571639 17571814 -102173084 - L1MC2 LINE L1 -743 5403 5224 2339 103 0 0 chr13 17573000 17573301 -102171597 - AluSq SINE Alu -12 301 1 941 203 17 0 chr13 17573686 17573863 -102171035 - AluSg/x SINE Alu -1 311 132 2128 133 0 9 chr13 17573863 17574178 -102170720 - AluSx SINE Alu 0 312 1 558 89 13 0 chr13 17574588 17574667 -102170231 - MADE1 DNA Mariner 0 80 1 182 357 20 31 chr13 17574883 17574981 -102169917 - L3b LINE CR1 -267 1316 1220 913 266 22 0 chr13 17576013 17576235 -102168663 + MIR SINE MIR 36 262 0 526 220 55 0 chr13 17576800 17576909 -102167989 + MIR3 SINE MIR 82 196 -12 207 200 62 113 chr13 17577159 17577239 -102167659 + L2 LINE L2 3197 3272 0 225 0 0 0 chr13 17577697 17577722 -102167176 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr13 17578196 17578217 -102166681 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 17578853 17578897 -102166001 + AT_rich Low_complexity Low_complexity 1 44 0 183 299 75 47 chr13 17579825 17579932 -102164966 + L2 LINE L2 3197 3306 -7 226 338 203 23 chr13 17580265 17580398 -102164500 - MIR3 SINE MIR -6 202 46 32 0 0 0 chr13 17580817 17580849 -102164049 + AT_rich Low_complexity Low_complexity 1 32 0 1203 242 168 66 chr13 17582128 17582615 -102162283 - MLT1F LTR MaLR 0 542 6 258 32 0 0 chr13 17583192 17583223 -102161675 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 531 31 0 0 chr13 17583222 17583287 -102161611 + (GA)n Simple_repeat Simple_repeat 2 66 0 428 261 27 9 chr13 17583289 17583400 -102161498 + MER5B DNA MER1_type 63 175 -3 11645 196 11 79 chr13 17583639 17585876 -102159022 + L1 LINE L1 2286 4435 -1711 1136 157 0 0 chr13 17585876 17586054 -102158844 + AluSp SINE Alu 136 313 0 11645 196 11 79 chr13 17586054 17586789 -102158109 + L1 LINE L1 4435 5219 -927 470 127 7 72 chr13 17586790 17587086 -102157812 + (CCCTAA)n Simple_repeat Simple_repeat 1 276 0 2908 155 2 14 chr13 17587230 17587747 -102157151 - TAR1 Satellite telomeric -43 2068 1558 387 275 33 0 chr13 17589010 17589130 -102155768 + MIR SINE MIR 84 207 -55 692 270 0 27 chr13 17589138 17589323 -102155575 - MIR SINE MIR -6 256 77 236 30 30 0 chr13 17589339 17589372 -102155526 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 222 226 19 0 chr13 17590045 17590098 -102154800 - L3b LINE CR1 -195 1388 1335 520 285 40 7 chr13 17590349 17590500 -102154398 - MIR3 SINE MIR -34 174 19 353 286 29 21 chr13 17590757 17590897 -102154001 - MIR SINE MIR -87 175 35 214 208 0 21 chr13 17591154 17591202 -102153696 + MIR SINE MIR 206 252 -10 270 284 51 60 chr13 17591852 17591952 -102152946 + MIR3 SINE MIR 79 178 -30 573 246 221 5 chr13 17592492 17592691 -102152207 - MIR SINE MIR -7 255 14 387 292 30 46 chr13 17592977 17593117 -102151781 - MIR SINE MIR -48 160 28 2335 92 0 3 chr13 17593120 17593423 -102151475 - AluSg SINE Alu -8 302 1 225 274 113 28 chr13 17594100 17594206 -102150692 + L2 LINE L2 3158 3272 0 550 314 41 18 chr13 17594508 17594728 -102150170 + MIR SINE MIR 2 226 -36 1204 139 34 29 chr13 17594850 17595058 -102149840 - AluJo SINE Alu -98 214 6 328 78 0 112 chr13 17595480 17595659 -102149239 + (TGGGGG)n Simple_repeat Simple_repeat 2 160 0 639 241 99 0 chr13 17596359 17596500 -102148398 + FRAM SINE Alu 1 155 -21 2076 122 0 3 chr13 17596502 17596796 -102148102 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr13 17597072 17597094 -102147804 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 17597169 17597193 -102147705 + AT_rich Low_complexity Low_complexity 1 24 0 745 324 109 30 chr13 17597320 17597795 -102147103 + L1MDb LINE L1 104 616 -5793 259 231 122 39 chr13 17597802 17597958 -102146940 + L1MDb LINE L1 454 622 -5787 321 322 71 33 chr13 17597975 17598186 -102146712 + L1MDb LINE L1 408 626 -5783 304 298 166 47 chr13 17598353 17598588 -102146310 + L1M2 LINE L1 982 1244 -5605 543 271 55 52 chr13 17599630 17600013 -102144885 - HSREP522 Satellite telomeric 0 504 121 229 310 17 35 chr13 17601248 17601422 -102143476 + GA-rich Low_complexity Low_complexity 5 175 0 334 183 0 14 chr13 17602195 17602266 -102142632 - L1 LINE L1 -3308 2838 2769 219 36 0 0 chr13 17602273 17602301 -102142597 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1721 142 32 4 chr13 17602301 17602577 -102142321 - AluSx SINE Alu -27 285 2 2254 218 14 10 chr13 17602577 17603072 -102141826 - L1 LINE L1 -2203 3943 3447 1675 243 16 0 chr13 17603074 17603445 -102141453 - MSTB LTR MaLR -49 377 1 3237 204 21 3 chr13 17603445 17604066 -102140832 - MSTB-int LTR MaLR 0 1651 1020 4568 273 37 26 chr13 17604068 17605637 -102139261 - L1P LINE L1 -2696 3450 1860 2045 142 0 0 chr13 17605637 17605932 -102138966 + AluSx SINE Alu 1 295 -17 4568 273 37 26 chr13 17605932 17606057 -102138841 - L1P LINE L1 -4286 1860 1738 5597 132 46 42 chr13 17606070 17608768 -102136130 + SVA Other Other 432 1384 -2 351 0 0 0 chr13 17608797 17608836 -102136062 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 317 63 7 chr13 17610219 17610361 -102134537 + L2 LINE L2 2722 2871 -443 277 289 0 0 chr13 17611167 17611257 -102133641 - L1MC4 LINE L1 -1339 6703 6614 22 56 0 0 chr13 17614149 17614185 -102130713 + AT_rich Low_complexity Low_complexity 1 36 0 368 294 88 23 chr13 17614331 17614637 -102130261 + L1ME4a LINE L1 5518 5843 -278 338 282 86 0 chr13 17615106 17615223 -102129675 - L2 LINE L2 0 3313 3187 931 334 84 36 chr13 17615437 17616126 -102128772 + L1MEc LINE L1 40 761 -5635 248 231 58 70 chr13 17616094 17616250 -102128648 + L1MEc LINE L1 973 1126 -5270 * 1338 224 41 94 chr13 17616403 17616644 -102128254 + L1MEc LINE L1 1944 2196 -4019 282 56 0 0 chr13 17616644 17616680 -102128218 + (TA)n Simple_repeat Simple_repeat 1 36 0 1338 224 41 94 chr13 17616680 17617273 -102127625 + L1MEc LINE L1 2196 2691 -3524 842 279 55 40 chr13 17617290 17617688 -102127210 + L1MEc LINE L1 2791 3194 -3021 1413 244 20 11 chr13 17617701 17618058 -102126840 + MLT1A1 LTR MaLR 6 365 0 339 294 71 20 chr13 17618075 17618327 -102126571 + L1MEc LINE L1 3230 3494 -2721 4195 79 8 11 chr13 17618328 17619300 -102125598 + L1P2 LINE L1 4851 5816 -338 276 306 25 19 chr13 17619535 17619692 -102125206 + L1ME3A LINE L1 5770 5927 -243 180 0 0 0 chr13 17619890 17619910 -102124988 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1099 58 0 0 chr13 17619914 17620052 -102124846 - AluY SINE Alu -13 298 161 395 165 12 0 chr13 17620084 17620169 -102124729 + (CA)n Simple_repeat Simple_repeat 1 86 0 24 85 0 0 chr13 17621575 17621634 -102123264 + AT_rich Low_complexity Low_complexity 1 59 0 353 221 307 21 chr13 17622326 17622466 -102122432 + MER5A DNA MER1_type 9 188 -1 1698 164 43 16 chr13 17623160 17623464 -102121434 - AluSx SINE Alu 0 312 1 23 33 0 0 chr13 17623466 17623496 -102121402 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 17624021 17624049 -102120849 + AT_rich Low_complexity Low_complexity 1 28 0 182 300 114 29 chr13 17624243 17624313 -102120585 - L2 LINE L2 -29 3243 3168 * 225 330 66 9 chr13 17624305 17624411 -102120487 + L2 LINE L2 2946 3057 -256 263 306 82 41 chr13 17624858 17625054 -102119844 - MIR SINE MIR -50 212 9 1937 101 0 4 chr13 17625681 17625939 -102118959 - AluY SINE Alu -5 306 50 217 363 61 52 chr13 17626861 17627189 -102117709 - L2 LINE L2 -339 2975 2645 21 57 0 0 chr13 17627727 17627762 -102117136 + AT_rich Low_complexity Low_complexity 1 35 0 725 249 61 0 chr13 17628909 17629106 -102115792 - L1MA4 LINE L1 -4 6296 6088 24 0 0 0 chr13 17629192 17629216 -102115682 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 17629464 17629487 -102115411 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr13 17630052 17630086 -102114812 + AT_rich Low_complexity Low_complexity 1 34 0 1738 68 0 5 chr13 17630256 17630475 -102114423 + AluY SINE Alu 84 301 -10 1794 148 34 3 chr13 17630485 17630783 -102114115 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr13 17630796 17630821 -102114077 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 17630951 17630979 -102113919 + AT_rich Low_complexity Low_complexity 1 28 0 633 202 9 0 chr13 17631513 17631627 -102113271 - FLAM_A SINE Alu -15 118 4 2302 60 10 3 chr13 17632504 17632802 -102112096 - AluY SINE Alu -11 300 1 219 198 8 83 chr13 17634557 17634678 -102110220 + A-rich Low_complexity Low_complexity 5 116 0 401 378 5 15 chr13 17635142 17635338 -102109560 + MIR SINE MIR 63 256 -6 419 162 95 0 chr13 17635485 17635559 -102109339 + AluSp SINE Alu 117 197 -106 560 161 25 8 chr13 17685560 17685678 -102059220 + L1PA16 LINE L1 6044 6163 -3 264 187 67 27 chr13 17685682 17685757 -102059141 + L1ME4a LINE L1 5966 6043 -78 201 147 0 0 chr13 17687972 17688006 -102056892 + (CA)n Simple_repeat Simple_repeat 1 34 0 4837 95 28 0 chr13 17688283 17688784 -102056114 - L1PA13 LINE L1 -7 6156 5627 2561 107 0 27 chr13 17688784 17689158 -102055740 + THE1B LTR MaLR 1 364 0 4837 95 28 0 chr13 17689158 17689379 -102055519 - L1PA13 LINE L1 -536 5627 5414 2214 190 29 16 chr13 17689759 17690436 -102054462 - L1M4 LINE L1 -405 6277 5592 709 233 28 40 chr13 17690455 17690708 -102054190 - L1M4 LINE L1 -2191 4453 4204 5117 188 15 20 chr13 17690713 17692287 -102052611 - L1PA16 LINE L1 -5 6864 5302 * 9698 118 17 29 chr13 17692281 17693747 -102051151 + THE1B-int LTR MaLR 133 1580 0 2539 100 5 24 chr13 17693747 17694118 -102050780 + THE1B LTR MaLR 1 364 0 263 231 22 88 chr13 17694129 17694220 -102050678 + L1PA15-16 LINE L1 1112 1196 -5653 * 6298 226 19 8 chr13 17694171 17695597 -102049301 - L1PA16 LINE L1 -5592 1257 5 603 219 103 0 chr13 17695612 17695767 -102049131 - L1M4 LINE L1 -2448 4196 4026 4601 257 74 45 chr13 17695822 17698635 -102046263 - L1M4c LINE L1 -3653 2991 2 278 317 33 17 chr13 17699674 17699794 -102045104 + L2 LINE L2 3192 3313 0 21 89 0 0 chr13 17699878 17699934 -102044964 + AT_rich Low_complexity Low_complexity 1 56 0 262 331 24 24 chr13 17699991 17700115 -102044783 - MIR SINE MIR -110 152 29 346 320 138 57 chr13 17700247 17700725 -102044173 - MLT1F LTR MaLR -8 534 18 238 255 89 76 chr13 17700799 17700956 -102043942 + MIR SINE MIR 60 218 -44 827 319 88 0 chr13 17701719 17702039 -102042859 - L2 LINE L2 -1646 1668 1321 656 302 32 29 chr13 17702134 17702412 -102042486 + MLT1K LTR MaLR 300 578 -10 366 274 61 17 chr13 17702520 17702649 -102042249 + MIR SINE MIR 37 170 -63 363 319 48 24 chr13 17702645 17702811 -102042087 - MIR SINE MIR -30 232 63 * 268 297 22 72 chr13 17702833 17702971 -102041927 - MER94 DNA DNA 0 134 4 1140 282 96 14 chr13 17702971 17703386 -102041512 - LTR16A LTR ERVL -1 449 1 2366 64 0 13 chr13 17703460 17703758 -102041140 - AluY SINE Alu -17 294 1 22 35 0 0 chr13 17703921 17703950 -102040948 + AT_rich Low_complexity Low_complexity 1 29 0 2545 183 55 6 chr13 17704566 17705058 -102039840 + MLT2B1 LTR ERVL 1 516 -4 225 0 0 0 chr13 17705218 17705243 -102039655 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 3348 94 78 166 chr13 17706251 17707005 -102037893 - LTR12 LTR ERV1 0 688 1 709 213 38 47 chr13 17707219 17707454 -102037444 - pTR5 LTR ERV1 -1463 975 743 2290 68 0 40 chr13 17707503 17707825 -102037073 + AluY SINE Alu 1 309 -2 229 152 22 0 chr13 17710151 17710197 -102034701 - HAL1 LINE L1 -134 2373 2327 257 209 22 143 chr13 17710207 17710298 -102034600 + MER77 LTR ERV1 11 90 -515 2629 174 99 36 chr13 17711111 17711776 -102033122 + MER39 LTR ERV1 1 707 0 366 333 57 13 chr13 17712010 17712169 -102032729 - L2 LINE L2 -329 2984 2819 497 223 0 7 chr13 17712306 17712494 -102032404 + MER58A DNA MER1_type 1 223 -1 1443 201 14 10 chr13 17712853 17713146 -102031752 - AluJb SINE Alu -16 296 3 33 43 0 0 chr13 17713788 17713835 -102031063 + AT_rich Low_complexity Low_complexity 1 47 0 312 27 0 0 chr13 17716034 17716071 -102028827 + (TG)n Simple_repeat Simple_repeat 2 38 0 4083 190 33 21 chr13 17716694 17718263 -102026635 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr13 17718318 17718370 -102026528 + AT_rich Low_complexity Low_complexity 1 52 0 2484 61 0 3 chr13 17718397 17718707 -102026191 - AluY SINE Alu -2 309 1 2778 13 0 0 chr13 17719018 17719328 -102025570 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr13 17720153 17720194 -102024704 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr13 17720844 17720874 -102024024 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 17720991 17721029 -102023869 + AT_rich Low_complexity Low_complexity 1 38 0 2039 145 89 8 chr13 17721127 17721499 -102023399 - MSTA LTR MaLR 0 428 27 2469 156 20 0 chr13 17721524 17721921 -102022977 - MSTA-int LTR MaLR 0 1651 1247 594 202 17 6 chr13 17721997 17722170 -102022728 + CT-rich Low_complexity Low_complexity 3 177 0 247 368 40 8 chr13 17722258 17722383 -102022515 - L2 LINE L2 -2 3270 3142 311 0 26 0 chr13 17722735 17722774 -102022124 + (TA)n Simple_repeat Simple_repeat 1 40 0 5438 239 62 26 chr13 17722775 17724794 -102020104 - L1M4 LINE L1 -1355 4791 2700 395 276 94 0 chr13 17724799 17724969 -102019929 - L1M4 LINE L1 -3488 2658 2473 2665 184 4 2 chr13 17725027 17725512 -102019386 - L1MA4 LINE L1 -195 6105 5620 658 221 7 13 chr13 17725653 17725807 -102019091 + L1M4 LINE L1 6 158 -6384 9714 198 43 26 chr13 17725842 17726616 -102018282 - L1MA4 LINE L1 -738 5567 4807 2076 101 18 4 chr13 17726616 17726917 -102017981 - AluSg SINE Alu 0 305 1 9714 198 43 26 chr13 17726917 17728957 -102015941 - L1MA4 LINE L1 -1498 4807 2131 502 271 54 0 chr13 17729070 17729236 -102015662 - L1MB4 LINE L1 0 6180 6006 592 238 60 12 chr13 17729256 17729424 -102015474 - L1M4 LINE L1 -1281 4865 4690 2787 247 71 10 chr13 17729436 17730080 -102014818 - L1MB4 LINE L1 -180 6000 5396 2013 121 0 0 chr13 17730080 17730360 -102014538 - AluSq SINE Alu -31 282 3 2787 247 71 10 chr13 17730360 17731284 -102013614 - L1MB4 LINE L1 -784 5396 4352 856 247 19 3 chr13 17731274 17731537 -102013361 - L1MB4 LINE L1 -2413 3733 3471 * 1613 186 25 74 chr13 17931664 17931830 -101813068 + MLT1A2 LTR MaLR 1 173 -201 2090 129 10 3 chr13 17931830 17932125 -101812773 + AluSx SINE Alu 1 297 -15 1613 186 25 74 chr13 17932125 17932322 -101812576 + MLT1A2 LTR MaLR 173 346 -28 278 25 0 25 chr13 17932322 17932362 -101812536 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1613 186 25 74 chr13 17932362 17932390 -101812508 + MLT1A2 LTR MaLR 346 374 0 1860 151 6 28 chr13 17932396 17932715 -101812183 - AluJo SINE Alu 0 312 1 332 329 70 35 chr13 17932723 17932951 -101811947 - L1M4 LINE L1 -3568 2578 2343 939 288 22 38 chr13 17933004 17933320 -101811578 - LTR16A LTR ERVL -32 418 108 22 0 0 0 chr13 17933480 17933502 -101811396 + AT_rich Low_complexity Low_complexity 1 22 0 2153 115 3 0 chr13 17933634 17933922 -101810976 - AluSg SINE Alu -21 289 1 2310 115 0 0 chr13 17934219 17934531 -101810367 - AluSx SINE Alu 0 312 1 2001 137 3 10 chr13 17934595 17934901 -101809997 - AluSx SINE Alu -8 304 1 946 164 55 6 chr13 17934904 17935027 -101809871 - L1M3 LINE L1 -560 5611 5475 207 0 0 0 chr13 17935027 17935050 -101809848 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 946 164 55 6 chr13 17935050 17935109 -101809789 - L1M3 LINE L1 -696 5475 5420 725 179 17 0 chr13 17935109 17935226 -101809672 - AluSg/x SINE Alu -9 303 185 2200 99 7 0 chr13 17935904 17936212 -101808686 + AluSq SINE Alu 1 310 0 33 66 0 0 chr13 17936528 17936589 -101808309 + AT_rich Low_complexity Low_complexity 1 61 0 1797 98 70 35 chr13 17936617 17936902 -101807996 - AluSg SINE Alu -15 295 1 803 100 0 50 chr13 17936921 17937041 -101807857 - AluSg/x SINE Alu -11 301 188 35 0 0 0 chr13 17937070 17937105 -101807793 + AT_rich Low_complexity Low_complexity 1 35 0 4839 36 0 23 chr13 17937105 17937680 -101807218 - L1PA4 LINE L1 -3 6152 5591 2043 106 39 7 chr13 17937689 17937972 -101806926 + AluSx SINE Alu 1 292 -20 1527 142 138 87 chr13 17938033 17938485 -101806413 + LTR54B LTR ERV1 1 479 -19 2512 76 0 0 chr13 17938485 17938788 -101806110 - AluSx SINE Alu -9 303 1 1527 142 138 87 chr13 17938788 17938807 -101806091 + LTR54B LTR ERV1 479 496 -2 24 53 0 0 chr13 17938830 17938868 -101806030 + AT_rich Low_complexity Low_complexity 1 38 0 489 273 8 8 chr13 17939234 17939366 -101805532 - MIR SINE MIR -15 247 116 254 326 31 8 chr13 17939384 17939513 -101805385 + L1MC4a LINE L1 5793 5924 -1884 1857 160 20 0 chr13 17940492 17940798 -101804100 + AluSx SINE Alu 1 312 0 935 286 54 27 chr13 17940812 17941182 -101803716 - MER93a LTR ERV1 -4 398 19 1446 185 15 59 chr13 17941185 17941509 -101803389 - AluJo SINE Alu -2 310 1 918 213 81 52 chr13 17941520 17941928 -101802970 + Charlie2 DNA MER1_type 2235 2654 -208 1439 171 0 28 chr13 17941931 17942183 -101802715 + AluJo SINE Alu 47 291 -21 876 249 95 21 chr13 17942201 17942404 -101802494 - Charlie2 DNA MER1_type -639 2223 1984 1802 211 32 51 chr13 17942404 17942877 -101802021 - MLT1C LTR MaLR -3 464 1 876 249 95 21 chr13 17942877 17943010 -101801888 - Charlie2 DNA MER1_type -878 1984 1862 498 264 218 0 chr13 17943022 17943238 -101801660 - Charlie2 DNA MER1_type -2540 322 60 278 258 89 16 chr13 17943844 17943968 -101800930 + L1MC4a LINE L1 5765 5897 -1911 2160 115 0 3 chr13 17944140 17944435 -101800463 - AluSx SINE Alu -18 294 1 221 188 29 29 chr13 17944451 17944520 -101800378 + A-rich Low_complexity Low_complexity 4 72 0 1918 140 0 0 chr13 17944736 17945007 -101799891 - AluSx SINE Alu -32 280 10 21 0 0 0 chr13 17945174 17945195 -101799703 + AT_rich Low_complexity Low_complexity 1 21 0 1705 93 0 25 chr13 17945208 17945444 -101799454 + AluSp SINE Alu 84 313 0 528 293 77 34 chr13 17945534 17945831 -101799067 + L2 LINE L2 2551 2860 -454 474 350 79 18 chr13 17945924 17946201 -101798697 + L2 LINE L2 3019 3312 -1 2336 55 0 61 chr13 17946480 17946824 -101798074 - AluY SINE Alu 0 311 1 2132 107 6 31 chr13 17946916 17947128 -101797770 - AluSq SINE Alu -4 309 106 234 0 0 0 chr13 17947128 17947154 -101797744 + (CTAGG)n Simple_repeat Simple_repeat 4 29 0 2132 107 6 31 chr13 17947154 17947258 -101797640 - AluSq SINE Alu -207 106 1 3405 150 14 12 chr13 17947504 17948078 -101796820 + L1MC1 LINE L1 5428 6002 -331 1247 158 27 18 chr13 17948104 17948326 -101796572 + L1MC1 LINE L1 6104 6327 -6 216 0 0 0 chr13 17948425 17948449 -101796449 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1501 155 22 43 chr13 17948477 17948592 -101796306 + AluJb SINE Alu 26 142 -170 2176 114 6 19 chr13 17948592 17948908 -101795990 + AluSx SINE Alu 1 312 0 1501 155 22 43 chr13 17948908 17949069 -101795829 + AluJb SINE Alu 142 296 -16 2189 116 7 0 chr13 17949071 17949373 -101795525 + AluSg SINE Alu 1 304 -6 340 118 29 15 chr13 17949392 17949460 -101795438 + GA-rich Low_complexity Low_complexity 4 72 0 1033 168 0 53 chr13 17949460 17949650 -101795248 + AluJo SINE Alu 6 185 -127 37 0 0 0 chr13 17949650 17949687 -101795211 + AT_rich Low_complexity Low_complexity 1 37 0 2302 181 18 2 chr13 17949810 17950207 -101794691 + MER57A LTR ERV1 1 403 0 204 295 16 0 chr13 17950272 17950333 -101794565 - MIR3 SINE MIR -3 205 144 1290 110 53 57 chr13 17950370 17950598 -101794300 - MER30 DNA MER1_type 0 230 4 4597 151 49 21 chr13 17950661 17950872 -101794026 + L1MA8 LINE L1 5107 5311 -980 1826 148 0 40 chr13 17950872 17951176 -101793722 + AluSx SINE Alu 1 292 -20 4597 151 49 21 chr13 17951176 17951187 -101793711 + L1MA8 LINE L1 5311 5320 -971 4597 137 32 30 chr13 17951187 17951995 -101792903 + L1MA8 LINE L1 5480 6289 -2 4597 151 49 21 chr13 17951995 17952016 -101792882 + L1MA8 LINE L1 5320 6289 -2 247 263 102 68 chr13 17952227 17952310 -101792588 - MIR3 SINE MIR -30 178 88 1443 201 110 48 chr13 17952310 17952683 -101792215 + MSTD LTR MaLR 1 396 0 247 263 102 68 chr13 17952683 17952717 -101792181 - MIR3 SINE MIR -120 88 57 2508 75 0 3 chr13 17952867 17953172 -101791726 + AluSc SINE Alu 1 304 -5 531 201 56 153 chr13 17953271 17953559 -101791339 - MER112 DNA MER1_type 0 260 1 2408 52 42 0 chr13 17953591 17953880 -101791018 - AluY SINE Alu -10 301 1 209 204 20 20 chr13 17953954 17954003 -101790895 + MIR SINE MIR 4 52 -210 2036 144 3 3 chr13 17954278 17954576 -101790322 - AluSx SINE Alu -14 298 1 270 0 0 0 chr13 17954603 17954633 -101790265 + (TTA)n Simple_repeat Simple_repeat 2 31 0 513 278 37 53 chr13 17954736 17954981 -101789917 - MIR SINE MIR 0 262 22 1217 84 0 0 chr13 17955095 17955250 -101789648 - AluSg/x SINE Alu -21 289 135 184 260 20 0 chr13 17955262 17955312 -101789586 - MIR SINE MIR -110 152 102 2393 170 46 11 chr13 17955449 17955908 -101788990 - L1MB7 LINE L1 -16 6168 5694 21 82 0 0 chr13 17957768 17957817 -101787081 + GC_rich Low_complexity Low_complexity 1 49 0 209 221 47 35 chr13 17957925 17958011 -101786887 + G-rich Low_complexity Low_complexity 4 90 0 24 67 0 0 chr13 17958135 17958180 -101786718 + GC_rich Low_complexity Low_complexity 1 45 0 213 185 83 28 chr13 17958654 17958762 -101786136 + (CGGGG)n Simple_repeat Simple_repeat 1 114 0 * 223 167 61 0 chr13 17958707 17958773 -101786125 + (CGG)n Simple_repeat Simple_repeat 1 70 0 24 32 0 0 chr13 17958805 17958836 -101786062 + GC_rich Low_complexity Low_complexity 1 31 0 313 229 46 37 chr13 17960676 17960785 -101784113 - L1MC5 LINE L1 -30 7931 7822 21 36 0 0 chr13 17961982 17962010 -101782888 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr13 17962052 17962072 -101782826 + (TA)n Simple_repeat Simple_repeat 2 21 0 2309 117 3 0 chr13 17962072 17962379 -101782519 - AluSq SINE Alu -5 308 1 2017 89 22 61 chr13 17962380 17962693 -101782205 - AluSx SINE Alu -11 301 1 2060 133 10 0 chr13 17963652 17963952 -101780946 + AluSx SINE Alu 1 303 -9 812 160 0 0 chr13 17963995 17964120 -101780778 - FLAM_C SINE Alu -18 125 1 783 107 99 0 chr13 17964534 17964655 -101780243 + L1PA6 LINE L1 6022 6154 0 2238 110 3 19 chr13 17965324 17965634 -101779264 - AluSx SINE Alu -7 305 1 2118 107 4 0 chr13 17965672 17965989 -101778909 - AluSp SINE Alu 0 318 1 1914 119 49 0 chr13 17966010 17966296 -101778602 - AluSp SINE Alu -13 300 1 439 241 35 28 chr13 17967025 17967170 -101777728 + L1ME1 LINE L1 6017 6162 -4 269 290 142 41 chr13 17967187 17967356 -101777542 + MIR SINE MIR 64 249 -13 2062 105 0 60 chr13 17967803 17968117 -101776781 - AluSq SINE Alu -18 295 1 256 304 54 18 chr13 17968911 17969023 -101775875 + MIR SINE MIR 42 157 -105 198 0 0 0 chr13 17970156 17970178 -101774720 + (A)n Simple_repeat Simple_repeat 1 22 0 314 333 106 80 chr13 17970216 17970630 -101774268 - L2 LINE L2 -4 3268 2844 210 191 0 0 chr13 17970776 17970818 -101774080 + (TA)n Simple_repeat Simple_repeat 1 42 0 2223 124 3 0 chr13 17970818 17971125 -101773773 - AluSp SINE Alu -5 308 1 382 321 194 19 chr13 17971178 17971555 -101773343 - L2 LINE L2 -697 2617 2175 761 294 127 20 chr13 17971997 17972399 -101772499 - L1MC4a LINE L1 -1896 5912 5468 258 81 0 0 chr13 17972453 17972490 -101772408 + (TA)n Simple_repeat Simple_repeat 1 37 0 2408 90 0 0 chr13 17972491 17972792 -101772106 - AluSq SINE Alu -12 301 1 2350 104 0 13 chr13 17972944 17973260 -101771638 + AluSx SINE Alu 1 312 0 1429 134 36 13 chr13 17973298 17973522 -101771376 - MER30 DNA MER1_type 0 230 2 338 228 49 41 chr13 17973536 17973659 -101771239 + L1M4 LINE L1 4487 4610 -1536 447 288 134 22 chr13 17973824 17974034 -101770864 - L1MC4a LINE L1 -1904 5904 5644 2229 96 14 0 chr13 17974034 17974325 -101770573 - AluSg SINE Alu -15 295 1 447 288 134 22 chr13 17974325 17974434 -101770464 - L1MC4a LINE L1 -2164 5644 5549 2996 185 63 9 chr13 17974745 17975393 -101769505 - L1MB4 LINE L1 -14 6166 5484 405 0 0 0 chr13 17975417 17975462 -101769436 + (TATG)n Simple_repeat Simple_repeat 3 47 0 743 173 0 39 chr13 17975462 17975580 -101769318 - FLAM_C SINE Alu -187 115 1 2226 115 13 0 chr13 17975607 17975911 -101768987 + AluSc SINE Alu 1 308 -1 1838 187 66 0 chr13 17975963 17976326 -101768572 - L1MB2 LINE L1 -2 6169 5783 * 2423 214 109 71 chr13 17976319 17976740 -101768158 - L1M4 LINE L1 -3493 3151 2747 815 169 0 29 chr13 17976740 17976876 -101768022 - FLAM_C SINE Alu -1 132 1 2423 214 109 71 chr13 17976876 17977034 -101767864 - L1M4 LINE L1 -3897 2747 2596 2334 77 10 13 chr13 17977034 17977345 -101767553 - AluY SINE Alu -1 310 1 2423 214 109 71 chr13 17977345 17977436 -101767462 - L1M4 LINE L1 -4048 2596 2510 2225 98 0 3 chr13 17977436 17977732 -101767166 - AluY SINE Alu -16 295 1 2423 214 109 71 chr13 17977732 17977970 -101766928 - L1M4 LINE L1 -4134 2510 2282 2273 87 7 10 chr13 17977970 17978270 -101766628 - AluSp SINE Alu -14 299 1 2423 214 109 71 chr13 17978270 17978891 -101766007 - L1M4 LINE L1 -4362 2282 1566 291 236 59 98 chr13 17978894 17979097 -101765801 - L1M4 LINE L1 -5520 1022 828 328 344 43 66 chr13 17979238 17979543 -101765355 - L1M4 LINE L1 -6084 562 265 41 14 5 0 chr13 17979604 17979687 -101765211 + AT_rich Low_complexity Low_complexity 1 48 0 326 269 138 30 chr13 17979769 17980025 -101764873 - L1M4 LINE L1 -1173 4973 4657 2311 113 0 3 chr13 17980025 17980335 -101764563 + AluSx SINE Alu 1 309 -3 326 269 138 30 chr13 17980335 17980476 -101764422 - L1M4 LINE L1 -1489 4657 4533 1721 197 3 0 chr13 17980545 17980881 -101764017 + AluJo SINE Alu 1 337 0 1050 134 24 93 chr13 17980889 17981135 -101763763 - L1MC5 LINE L1 -1023 6938 6710 796 283 112 40 chr13 17981138 17981781 -101763117 - HAL1 LINE L1 -1400 1107 419 2019 112 0 0 chr13 17981837 17982106 -101762792 - AluSx SINE Alu -6 306 38 392 42 0 0 chr13 17982155 17982203 -101762695 + MADE1 DNA Mariner 1 48 -32 627 269 10 35 chr13 17982338 17982539 -101762359 - HAL1 LINE L1 -2272 235 40 377 392 25 32 chr13 17982556 17982703 -101762195 - L1M4 LINE L1 -1821 4325 4179 2233 111 0 3 chr13 17982703 17983001 -101761897 - AluSx SINE Alu -15 297 1 377 392 25 32 chr13 17983001 17983131 -101761767 - L1M4 LINE L1 -1967 4179 4050 1912 159 3 0 chr13 17983174 17983483 -101761415 - AluJb SINE Alu -2 310 1 1737 192 0 0 chr13 17984682 17984979 -101759919 - AluJb SINE Alu -15 297 1 1291 135 19 126 chr13 17985115 17985456 -101759442 + AluJo SINE Alu 1 307 0 1294 194 3 45 chr13 17985458 17985747 -101759151 + AluJo SINE Alu 1 277 -35 251 27 0 27 chr13 17985749 17985786 -101759112 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 458 171 128 8 chr13 17985818 17985935 -101758963 + FLAM_A SINE Alu 12 142 0 24 32 0 0 chr13 17986116 17986147 -101758751 + AT_rich Low_complexity Low_complexity 1 31 0 264 321 169 27 chr13 17986256 17986376 -101758522 - MIR SINE MIR 0 262 160 2372 84 0 28 chr13 17986376 17986696 -101758202 + AluSx SINE Alu 1 311 -1 264 321 169 27 chr13 17986696 17986759 -101758139 - MIR SINE MIR -102 160 53 2090 103 3 3 chr13 17986824 17987115 -101757783 - AluSg SINE Alu -17 293 3 382 116 0 23 chr13 17987127 17987213 -101757685 + (TG)n Simple_repeat Simple_repeat 2 85 0 1214 181 23 5 chr13 17987250 17987466 -101757432 - AluJb SINE Alu -92 220 1 213 264 14 56 chr13 17987966 17988038 -101756860 - L2 LINE L2 -6 3266 3198 2043 92 16 33 chr13 17988052 17988356 -101756542 + AluSc SINE Alu 1 299 -10 1735 86 117 52 chr13 17988808 17988854 -101756044 - L1MA2 LINE L1 -6 6298 6256 1804 141 0 0 chr13 17988854 17989116 -101755782 - AluSx SINE Alu -8 304 43 1735 86 117 52 chr13 17989116 17989393 -101755505 - L1MA2 LINE L1 -48 6256 5954 668 292 107 0 chr13 17989458 17989691 -101755207 + L2 LINE L2 2523 2780 -534 325 250 29 59 chr13 17989694 17989830 -101755068 + L2 LINE L2 3182 3313 0 476 333 52 26 chr13 17989854 17990085 -101754813 + L2 LINE L2 2823 3059 -254 422 120 13 0 chr13 17990603 17990678 -101754220 + (TG)n Simple_repeat Simple_repeat 1 76 0 1884 159 3 20 chr13 17990678 17990974 -101753924 - AluJo SINE Alu -21 291 1 250 241 38 38 chr13 17990980 17991059 -101753839 + L2 LINE L2 3186 3264 -8 204 272 49 25 chr13 17991084 17991165 -101753733 + MIR SINE MIR 47 129 -133 1756 144 4 14 chr13 17991169 17991446 -101753452 - AluJb SINE Alu 0 312 39 822 202 31 40 chr13 17991448 17991671 -101753227 - MLT1D LTR MaLR -283 222 2 1420 154 75 26 chr13 17991825 17991952 -101752946 + AluJb SINE Alu 1 120 -192 189 0 0 0 chr13 17991952 17991973 -101752925 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1420 154 75 26 chr13 17991973 17992112 -101752786 + AluJb SINE Alu 120 280 -32 885 104 0 22 chr13 17993753 17993887 -101751011 + FLAM_C SINE Alu 1 131 -2 2056 107 21 17 chr13 17994053 17994343 -101750555 - AluSx SINE Alu -21 291 1 25 23 0 23 chr13 17994374 17994399 -101750499 + AT_rich Low_complexity Low_complexity 1 26 -16 1570 190 0 40 chr13 17994399 17994699 -101750199 - AluJo SINE Alu -24 288 1 25 23 0 23 chr13 17994699 17994716 -101750182 + AT_rich Low_complexity Low_complexity 26 42 0 284 233 27 0 chr13 17994779 17994852 -101750046 - L1MA10 LINE L1 0 6334 6260 31 0 0 0 chr13 17994906 17994937 -101749961 + AT_rich Low_complexity Low_complexity 1 31 0 1523 153 120 7 chr13 17994959 17995233 -101749665 - AluSg1 SINE Alu -4 305 1 1078 178 28 37 chr13 17995345 17995559 -101749339 + AluJb SINE Alu 85 296 -16 1640 180 0 48 chr13 17995854 17995999 -101748899 + AluJo SINE Alu 2 126 -186 2014 116 34 0 chr13 17995999 17996291 -101748607 + AluSx SINE Alu 1 302 -10 1640 180 0 48 chr13 17996291 17996456 -101748442 + AluJo SINE Alu 126 297 -15 437 239 0 18 chr13 17996480 17996593 -101748305 + FAM SINE Alu 41 151 -34 407 197 0 0 chr13 17996850 17996926 -101747972 - L1ME LINE L1 -437 5684 5609 210 118 0 0 chr13 17997061 17997095 -101747803 + (TG)n Simple_repeat Simple_repeat 2 35 0 227 256 47 12 chr13 17997097 17997183 -101747715 - L1ME LINE L1 -507 5614 5526 13410 126 85 16 chr13 17998747 17999365 -101745533 + Tigger1 DNA MER2_type 1 575 -1843 1628 174 24 17 chr13 17999365 17999652 -101745246 - AluJb SINE Alu -23 289 1 13410 126 85 16 chr13 17999652 18000664 -101744234 + Tigger1 DNA MER2_type 575 1834 -584 2019 152 7 0 chr13 18000664 18000967 -101743931 + AluSx SINE Alu 1 305 -7 13410 126 85 16 chr13 18000967 18001596 -101743302 + Tigger1 DNA MER2_type 1834 2418 0 358 254 182 22 chr13 18001849 18002030 -101742868 - MIR SINE MIR -2 260 51 648 155 105 33 chr13 18002051 18002232 -101742666 - L1MA8 LINE L1 -3 6288 6095 2054 128 0 49 chr13 18003176 18003503 -101741395 - AluSx SINE Alu -1 311 1 2274 68 0 4 chr13 18003802 18004108 -101740790 - AluY SINE Alu 0 306 2 1748 179 3 10 chr13 18005502 18005803 -101739095 + AluJo SINE Alu 1 299 -13 282 164 295 0 chr13 18006283 18006344 -101738554 - Tigger5 DNA MER2_type -2244 79 1 242 224 0 0 chr13 18006381 18006430 -101738468 - Tigger5 DNA MER2_type -17 2306 2258 * 405 188 52 31 chr13 18006411 18006507 -101738391 + Tigger5 DNA MER2_type 2226 2323 0 2310 86 0 3 chr13 18006697 18006988 -101737910 - AluSq SINE Alu -20 293 4 247 211 28 28 chr13 18007016 18007087 -101737811 - L1 LINE L1 -3324 2822 2752 382 266 62 76 chr13 18007127 18007175 -101737723 - L1 LINE L1 -2227 3919 3872 2128 127 3 0 chr13 18007175 18007475 -101737423 - AluSx SINE Alu -11 301 1 382 266 62 76 chr13 18007475 18007502 -101737396 - L1 LINE L1 -2274 3872 3846 914 204 90 75 chr13 18007502 18007686 -101737212 + MER44D DNA MER2_type 2 182 -2309 2002 145 0 3 chr13 18007686 18007982 -101736916 - AluSx SINE Alu -14 298 4 914 204 90 75 chr13 18007982 18008130 -101736768 + MER44D DNA MER2_type 182 609 0 382 266 62 76 chr13 18008130 18008343 -101736555 - L1 LINE L1 -2300 3846 3634 380 275 159 48 chr13 18008349 18008658 -101736240 + L1 LINE L1 2995 3337 -2809 244 290 50 0 chr13 18008834 18008934 -101735964 + L1 LINE L1 3515 3619 -2527 7987 217 67 46 chr13 18008957 18009738 -101735160 - L1MB4 LINE L1 -6 6410 5647 1770 151 6 25 chr13 18009738 18010056 -101734842 - AluSx SINE Alu 0 312 1 7987 217 67 46 chr13 18010056 18010159 -101734739 - L1MB4 LINE L1 -769 5647 5548 2172 118 0 0 chr13 18010159 18010493 -101734405 - AluSg SINE Alu 0 310 1 1391 159 23 0 chr13 18010496 18010760 -101734138 - L1MA5 LINE L1 0 6300 6031 7987 217 67 46 chr13 18010760 18010806 -101734092 - L1MB4 LINE L1 -869 5547 5503 1113 196 35 4 chr13 18010806 18011035 -101733863 - MER46A DNA MER2_type 0 236 1 7987 217 67 46 chr13 18011035 18011120 -101733778 - L1MB4 LINE L1 -913 5503 5421 2117 112 3 22 chr13 18011120 18011297 -101733601 - AluSx SINE Alu -3 309 139 2173 115 3 3 chr13 18011297 18011602 -101733296 - AluSx SINE Alu -5 307 3 2117 112 3 22 chr13 18011602 18011737 -101733161 - AluSx SINE Alu -173 139 3 1907 146 3 14 chr13 18011739 18012034 -101732864 - AluSx SINE Alu -20 292 1 7987 217 67 46 chr13 18012034 18013625 -101731273 - L1MB4 LINE L1 -995 5421 3864 2144 100 0 4 chr13 18013625 18013926 -101730972 - AluSc SINE Alu 0 300 1 7987 217 67 46 chr13 18013926 18014317 -101730581 - L1MB4 LINE L1 -2552 3864 3483 2090 128 17 0 chr13 18014317 18014613 -101730285 - AluSx SINE Alu -9 303 3 7987 217 67 46 chr13 18014613 18016600 -101728298 - L1MB4 LINE L1 -2933 3483 1169 617 270 144 46 chr13 18016616 18016901 -101727997 - L1MDa LINE L1 -5898 642 330 * 1225 226 82 45 chr13 18016897 18017743 -101727155 - L1MDa LINE L1 -4745 1795 749 307 206 211 10 chr13 18017764 18017963 -101726935 + Charlie7 DNA MER1_type 2373 2611 -1 2155 119 3 3 chr13 18018353 18018665 -101726233 + AluSq SINE Alu 2 313 0 191 257 0 0 chr13 18019432 18019467 -101725431 + L2 LINE L2 3259 3293 -20 448 208 52 78 chr13 18019614 18019768 -101725130 - L1MC4 LINE L1 -242 7800 7651 2156 82 41 3 chr13 18019786 18020078 -101724820 - AluSp SINE Alu -10 303 1 311 250 81 32 chr13 18020078 18020202 -101724696 - L1MEc LINE L1 -4956 1586 1457 207 143 0 41 chr13 18020203 18020252 -101724646 + (TATTG)n Simple_repeat Simple_repeat 5 51 0 1847 240 57 111 chr13 18020255 18020535 -101724363 - L1MEc LINE L1 -5202 1623 1329 2445 65 0 0 chr13 18020535 18020829 -101724069 - AluY SINE Alu -17 294 1 1847 240 57 111 chr13 18020829 18021746 -101723152 - L1MEc LINE L1 -5496 1329 491 1321 167 98 0 chr13 18021765 18022052 -101722846 - L1MC4 LINE L1 -422 7620 7306 1060 213 139 18 chr13 18022379 18022774 -101722124 - Charlie4a DNA MER1_type -4 504 62 2224 123 3 0 chr13 18023478 18023787 -101721111 - AluSg SINE Alu 0 310 1 434 139 0 13 chr13 18024956 18025035 -101719863 - FLAM_A SINE Alu -10 132 55 454 163 0 22 chr13 18025086 18025178 -101719720 - AluJ/FLAM SINE Alu -218 94 5 189 0 0 0 chr13 18025197 18025218 -101719680 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1497 129 133 0 chr13 18025226 18025474 -101719424 - MER7A DNA MER2_type -1 345 67 33 25 0 0 chr13 18025598 18025638 -101719260 + AT_rich Low_complexity Low_complexity 1 40 0 542 305 138 27 chr13 18027179 18027513 -101717385 + L3 LINE CR1 1163 1533 -44 1702 179 9 18 chr13 18028096 18028425 -101716473 + MER2 DNA MER2_type 1 326 -19 1480 207 36 25 chr13 18028626 18028984 -101715914 - MLT1A1 LTR MaLR -3 362 1 2035 138 10 0 chr13 18029356 18029647 -101715251 - AluSx SINE Alu -16 296 3 2262 108 0 16 chr13 18029775 18029953 -101714945 - AluSx SINE Alu -2 310 138 2548 57 0 0 chr13 18029953 18030252 -101714646 - AluY SINE Alu -12 299 1 2262 108 0 16 chr13 18030252 18030388 -101714510 - AluSx SINE Alu -174 138 1 28 71 0 0 chr13 18030667 18030723 -101714175 + AT_rich Low_complexity Low_complexity 1 56 0 2195 112 13 0 chr13 18031420 18031725 -101713173 - AluSx SINE Alu -3 309 1 2470 87 0 0 chr13 18032154 18032463 -101712435 - AluSx SINE Alu -3 309 1 21 36 0 0 chr13 18035420 18035448 -101709450 + AT_rich Low_complexity Low_complexity 1 28 0 2258 93 20 3 chr13 18036768 18037069 -101707829 - AluSx SINE Alu -6 306 1 365 97 81 0 chr13 18037302 18037364 -101707534 - L1PA13 LINE L1 -8 6806 6740 2715 108 35 0 chr13 18037411 18037817 -101707081 - L1PA13 LINE L1 -60 6754 6335 18824 188 39 17 chr13 18037817 18039028 -101705870 - L1PA13 LINE L1 -967 5830 4647 2241 96 0 10 chr13 18039028 18039330 -101705568 - AluY SINE Alu -12 299 1 18824 188 39 17 chr13 18039330 18042279 -101702619 - L1PA13 LINE L1 -2150 4647 1506 2025 157 0 0 chr13 18042279 18042578 -101702320 - AluSx SINE Alu -13 299 1 18824 188 39 17 chr13 18042578 18044118 -101700780 - L1PA13 LINE L1 -5291 1506 1 2417 88 0 0 chr13 18044322 18044627 -101700271 + AluSx SINE Alu 1 305 -7 25 51 0 0 chr13 18045365 18045404 -101699494 + AT_rich Low_complexity Low_complexity 1 39 0 1744 161 20 33 chr13 18045514 18045818 -101699080 + AluJo SINE Alu 1 300 -12 1612 203 0 23 chr13 18045821 18046122 -101698776 + AluJo SINE Alu 3 296 -16 243 0 0 0 chr13 18046138 18046165 -101698733 + (TG)n Simple_repeat Simple_repeat 2 28 0 333 250 71 0 chr13 18046165 18046249 -101698649 + L1MC4 LINE L1 6614 6703 -1339 320 298 21 0 chr13 18046181 18046275 -101698623 - L1MC4 LINE L1 -1339 6703 6608 * 31 58 0 0 chr13 18047844 18047896 -101697002 + AT_rich Low_complexity Low_complexity 1 52 0 210 304 43 0 chr13 18048229 18048298 -101696600 + L3 LINE CR1 1459 1530 -47 292 258 250 23 chr13 18049198 18049326 -101695572 + MIR SINE MIR 44 200 -62 24 32 0 0 chr13 18050457 18050488 -101694410 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr13 18051541 18051594 -101693304 + AT_rich Low_complexity Low_complexity 1 53 0 344 261 11 22 chr13 18052830 18052922 -101691976 - MER5B DNA MER1_type -1 177 87 2142 88 34 10 chr13 18052934 18053229 -101691669 + AluSq SINE Alu 1 302 -11 417 244 0 0 chr13 18053738 18053828 -101691070 + MIR SINE MIR 78 167 -95 552 321 74 4 chr13 18053877 18054120 -101690778 + MIR SINE MIR 2 261 -1 337 179 90 13 chr13 18054407 18054485 -101690413 - MIR SINE MIR -110 152 69 658 194 61 92 chr13 18054494 18054690 -101690208 - MER8 DNA MER2_type -1 238 49 2233 177 40 38 chr13 18054768 18055221 -101689677 - MER82 DNA MER2_type 0 653 200 294 314 65 54 chr13 18055799 18056076 -101688822 + Tigger2 DNA MER2_type 1411 1690 -1028 1827 155 34 0 chr13 18056651 18056825 -101688073 - AluSx SINE Alu -5 307 117 249 109 0 0 chr13 18056825 18056871 -101688027 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1827 155 34 0 chr13 18056871 18056993 -101687905 - AluSx SINE Alu -195 117 1 653 218 56 0 chr13 18057277 18057419 -101687479 - MER82 DNA MER2_type -492 161 12 342 113 25 125 chr13 18059183 18059263 -101685635 + Tigger2 DNA MER2_type 1 72 -2646 253 222 111 0 chr13 18059266 18059320 -101685578 - MER2 DNA MER2_type -4 341 282 * 473 172 192 86 chr13 18059299 18059329 -101685569 - MER8 DNA MER2_type -64 175 150 1823 160 7 0 chr13 18059329 18059610 -101685288 + AluJb SINE Alu 21 303 -9 473 172 192 86 chr13 18059610 18059730 -101685168 - MER8 DNA MER2_type -89 150 9 2289 100 3 0 chr13 18059952 18060252 -101684646 + AluSq SINE Alu 1 301 -12 183 42 0 0 chr13 18061137 18061161 -101683737 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1826 153 22 0 chr13 18061163 18061438 -101683460 - AluSx SINE Alu -31 281 1 368 191 112 79 chr13 18061706 18061858 -101683040 - MER112 DNA MER1_type -6 254 98 1894 109 0 0 chr13 18062734 18062982 -101681916 + AluJb SINE Alu 59 306 -6 2242 95 11 0 chr13 18063056 18063340 -101681558 + AluSq SINE Alu 3 289 -24 426 92 63 29 chr13 18063340 18063514 -101681384 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 71 0 0 chr13 18064212 18064254 -101680644 + AT_rich Low_complexity Low_complexity 1 42 0 207 281 16 16 chr13 18064254 18064375 -101680523 + (TTA)n Simple_repeat Simple_repeat 2 122 0 1136 191 12 16 chr13 18064814 18065070 -101679828 + L1M4 LINE L1 4947 5201 -945 1318 122 141 53 chr13 18065072 18065335 -101679563 + AluJo SINE Alu 1 286 -26 286 83 0 0 chr13 18065351 18065387 -101679511 + U1 snRNA snRNA 1 36 -129 * 316 166 0 11 chr13 18065368 18065440 -101679458 + Alu SINE Alu 248 300 -2 586 190 17 17 chr13 18065796 18065912 -101678986 - Tigger2 DNA MER2_type 0 2718 2603 * 1939 113 88 105 chr13 18065907 18066315 -101678583 - Tigger2 DNA MER2_type -39 2679 1 24 53 0 0 chr13 18066755 18066793 -101678105 + AT_rich Low_complexity Low_complexity 1 38 0 518 264 64 90 chr13 18067841 18068152 -101676746 + MER46C DNA MER2_type 34 336 -2 1232 228 60 116 chr13 18068651 18069339 -101675559 - L1MDa LINE L1 -1814 4401 3753 2198 89 10 3 chr13 18070072 18070365 -101674533 - AluSc SINE Alu -14 295 1 941 94 106 12 chr13 18070655 18070815 -101674083 - AluSg/x SINE Alu -21 291 117 3222 125 60 2 chr13 18070831 18071386 -101673512 - MER51C LTR ERV1 0 640 1 889 212 38 128 chr13 18071740 18071794 -101673104 - L1MDa LINE L1 -2467 3748 3691 2214 113 0 3 chr13 18071794 18072095 -101672803 + AluSq SINE Alu 1 300 -13 889 212 38 128 chr13 18072095 18072431 -101672467 - L1MDa LINE L1 -2524 3691 3393 2112 141 3 6 chr13 18072451 18072764 -101672134 - AluSx SINE Alu 0 312 1 517 178 10 10 chr13 18072791 18072892 -101672006 - MER58 DNA MER1_type 0 2420 2320 470 202 148 5 chr13 18073034 18073237 -101671661 - L1MDa LINE L1 -2982 3233 3002 21 36 0 0 chr13 18073278 18073306 -101671592 + AT_rich Low_complexity Low_complexity 1 28 0 2136 137 3 8 chr13 18073396 18073753 -101671145 - L1MB3 LINE L1 -3 6180 5826 378 0 0 0 chr13 18073753 18073795 -101671103 + (TG)n Simple_repeat Simple_repeat 1 42 0 1613 181 0 17 chr13 18073806 18074093 -101670805 - AluJb SINE Alu -30 282 1 2518 51 0 0 chr13 18074100 18074394 -101670504 - AluY SINE Alu -17 294 1 319 164 30 0 chr13 18074456 18074523 -101670375 + L1MB2 LINE L1 6096 6164 -7 1724 122 17 51 chr13 18075227 18075523 -101669375 - AluSx SINE Alu -5 307 22 2186 50 90 7 chr13 18075720 18075999 -101668899 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 18076132 18076154 -101668744 + AT_rich Low_complexity Low_complexity 1 22 0 536 210 206 0 chr13 18076548 18076781 -101668117 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 18076884 18076907 -101667991 + AT_rich Low_complexity Low_complexity 1 23 0 2462 79 3 0 chr13 18076919 18077224 -101667674 + AluSc SINE Alu 1 306 -3 365 203 26 123 chr13 18078232 18078371 -101666527 - L1MDa LINE L1 -3828 2387 2264 1913 143 7 7 chr13 18078371 18078665 -101666233 - AluJb SINE Alu -14 298 5 365 203 26 123 chr13 18078665 18078701 -101666197 - L1MDa LINE L1 -3951 2264 2226 303 253 55 22 chr13 18078762 18078853 -101666045 - MER58 DNA MER1_type -2151 269 176 232 250 19 0 chr13 18078850 18078902 -101665996 - MER58 DNA MER1_type -158 57 5 * 956 215 105 12 chr13 18078913 18079238 -101665660 - L1MDa LINE L1 -4139 2257 1903 21 36 0 0 chr13 18080615 18080643 -101664255 + AT_rich Low_complexity Low_complexity 1 28 0 2325 90 3 10 chr13 18080930 18081240 -101663658 - AluSp SINE Alu -5 308 1 1842 154 0 10 chr13 18081896 18082188 -101662710 - AluJo SINE Alu -20 292 4 713 226 53 11 chr13 18082229 18082419 -101662479 - MER58A DNA MER1_type 0 224 27 1542 142 63 79 chr13 18082782 18083149 -101661749 - MER46B DNA MER2_type 0 236 1 428 204 76 52 chr13 18083328 18083500 -101661398 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 18084107 18084128 -101660770 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 18084373 18084410 -101660488 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 18084601 18084683 -101660215 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 18088496 18088625 -101656273 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 18088699 18088778 -101656120 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 18089099 18089213 -101655685 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 18089577 18089655 -101655243 + L2 LINE L2 3231 3309 -4 190 333 38 38 chr13 18089913 18090018 -101654880 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 18090510 18090657 -101654241 - MIR SINE MIR -88 174 6 7383 199 104 56 chr13 18090982 18091299 -101653599 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 18091299 18091371 -101653527 + Alu SINE Alu 1 72 -237 7383 199 104 56 chr13 18091371 18093291 -101651607 - Cheshire DNA MER1_type -300 2120 2 2147 120 0 0 chr13 18093339 18093639 -101651259 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 18093650 18093710 -101651188 + L2 LINE L2 1411 1472 -1842 320 282 137 0 chr13 18093710 18093827 -101651071 + L2 LINE L2 1646 1778 -1536 285 307 123 9 chr13 18095259 18095373 -101649525 + L2 LINE L2 3145 3271 -1 379 345 103 5 chr13 18096412 18096606 -101648292 + MIR SINE MIR 34 246 -16 201 74 0 0 chr13 18096677 18096704 -101648194 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 1531 219 41 24 chr13 18096853 18097246 -101647652 - MSTD LTR MaLR -2 394 3 366 23 0 0 chr13 18097779 18097822 -101647076 + (CA)n Simple_repeat Simple_repeat 2 44 0 28 0 0 0 chr13 18098056 18098084 -101646814 + AT_rich Low_complexity Low_complexity 1 28 0 867 112 0 14 chr13 18098709 18098852 -101646046 - L1MB3 LINE L1 -217 5966 5826 414 0 0 0 chr13 18098852 18098898 -101646000 + (TG)n Simple_repeat Simple_repeat 1 46 0 1611 181 0 17 chr13 18098913 18099200 -101645698 - AluJb SINE Alu -30 282 1 2514 51 0 0 chr13 18099207 18099501 -101645397 - AluY SINE Alu -17 294 1 312 164 30 0 chr13 18099563 18099630 -101645268 + L1MB2 LINE L1 6096 6164 -7 1944 110 22 54 chr13 18100337 18100654 -101644244 - AluSx SINE Alu 0 312 6 1654 114 30 11 chr13 18101489 18101753 -101643145 - AluSx SINE Alu -1 311 43 372 255 235 0 chr13 18101893 18102046 -101642852 - MIR SINE MIR -2 260 72 2182 54 90 7 chr13 18102503 18102782 -101642116 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 18102915 18102937 -101641961 + AT_rich Low_complexity Low_complexity 1 22 0 478 210 206 0 chr13 18103331 18103564 -101641334 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 18103667 18103690 -101641208 + AT_rich Low_complexity Low_complexity 1 23 0 2488 79 3 0 chr13 18103702 18104007 -101640891 + AluSc SINE Alu 1 306 -3 335 246 43 29 chr13 18105016 18105154 -101639744 - L1MEc LINE L1 -3828 2387 2248 1925 143 7 7 chr13 18105155 18105449 -101639449 - AluJb SINE Alu -14 298 5 276 253 63 0 chr13 18105558 18105637 -101639261 - MER58 DNA MER1_type -2161 259 176 875 215 105 12 chr13 18105697 18106022 -101638876 - L1MEc LINE L1 -4139 2257 1903 21 36 0 0 chr13 18107400 18107428 -101637470 + AT_rich Low_complexity Low_complexity 1 28 0 2344 90 3 10 chr13 18107715 18108025 -101636873 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 18108681 18108973 -101635925 - AluJo SINE Alu -20 292 4 641 216 58 16 chr13 18109014 18109204 -101635694 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 18109567 18109934 -101634964 - MER46B DNA MER2_type 0 236 1 423 204 76 52 chr13 18110113 18110285 -101634613 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 18110892 18110913 -101633985 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 18111158 18111195 -101633703 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 18111386 18111468 -101633430 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 18115280 18115409 -101629489 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 18115483 18115562 -101629336 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 18115883 18115997 -101628901 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 18116357 18116435 -101628463 + L2 LINE L2 3231 3309 -4 202 324 38 38 chr13 18116693 18116798 -101628100 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 18117290 18117437 -101627461 - MIR SINE MIR -88 174 6 7366 199 104 56 chr13 18117762 18118079 -101626819 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 18118079 18118151 -101626747 + Alu SINE Alu 1 72 -238 7366 199 104 56 chr13 18118151 18120071 -101624827 - Cheshire DNA MER1_type -300 2120 2 2134 120 0 0 chr13 18120119 18120419 -101624479 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 18120430 18120490 -101624408 + L2 LINE L2 1411 1472 -1842 1310 271 127 28 chr13 18120490 18120735 -101624163 + L2 LINE L2 1646 1865 -1449 1817 137 48 17 chr13 18120735 18121028 -101623870 - AluJb SINE Alu -10 302 1 1310 271 127 28 chr13 18121028 18121317 -101623581 + L2 LINE L2 1865 2233 -1081 215 176 98 0 chr13 18121377 18121428 -101623470 - MIR SINE MIR -44 218 163 257 217 17 0 chr13 18121429 18121489 -101623409 - MER58A DNA MER1_type 0 224 164 2853 103 55 118 chr13 18121495 18121817 -101623081 - LTR12 LTR ERV1 -132 582 316 189 0 0 0 chr13 18121817 18121838 -101623060 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 2853 103 55 118 chr13 18121838 18122136 -101622762 - LTR12 LTR ERV1 -398 316 1 603 166 50 22 chr13 18122143 18122282 -101622616 - MER58C DNA MER1_type -72 143 1 576 216 65 7 chr13 18122305 18122444 -101622454 - MIR SINE MIR -108 154 8 2351 256 152 42 chr13 18122497 18123889 -101621009 + HAL1 LINE L1 249 1794 -713 719 189 18 6 chr13 18123933 18124097 -101620801 + LTR41 LTR ERVL 5 170 -603 479 204 53 29 chr13 18124258 18124465 -101620433 + LTR41 LTR ERVL 566 795 0 296 252 60 66 chr13 18124465 18124783 -101620115 + HAL1 LINE L1 2135 2450 -57 572 111 0 11 chr13 18124799 18124889 -101620009 - Tigger7 DNA MER2_type -7 2484 2396 * 806 222 5 25 chr13 18124887 18125090 -101619808 - Tigger7 DNA MER2_type -466 267 69 2651 139 19 24 chr13 18125178 18125406 -101619492 + L1MB3 LINE L1 5710 5937 -246 2040 137 0 0 chr13 18125406 18125706 -101619192 + AluSx SINE Alu 1 300 -12 2651 139 19 24 chr13 18125706 18125943 -101618955 + L1MB3 LINE L1 5937 6173 -10 25 0 0 0 chr13 18126088 18126113 -101618785 + AT_rich Low_complexity Low_complexity 1 25 0 216 254 175 35 chr13 18126259 18126373 -101618525 - L2 LINE L2 -5 3267 3138 943 176 77 31 chr13 18126876 18127098 -101617800 - MSTD LTR MaLR 0 396 165 1863 142 4 0 chr13 18127926 18128193 -101616705 - AluSx SINE Alu -44 268 1 21 36 0 0 chr13 18128426 18128454 -101616444 + AT_rich Low_complexity Low_complexity 1 28 0 1651 138 28 28 chr13 18128567 18128850 -101616048 - AluJo SINE Alu -29 283 1 233 224 0 0 chr13 18130683 18130732 -101614166 - L3 LINE CR1 -1 1576 1528 565 285 18 35 chr13 18130741 18130810 -101614088 + MER58A DNA MER1_type 1 70 -2350 2317 101 0 0 chr13 18130810 18131107 -101613791 + AluSx SINE Alu 1 297 -15 565 285 18 35 chr13 18131107 18131265 -101613633 + MER58A DNA MER1_type 70 224 0 904 233 134 27 chr13 18132056 18132460 -101612438 + L1ME4a LINE L1 5561 6007 -114 835 279 69 47 chr13 18132549 18132779 -101612119 - L1MEd LINE L1 -4869 1250 1026 381 22 0 0 chr13 18132779 18132825 -101612073 + (TG)n Simple_repeat Simple_repeat 2 47 0 2197 123 0 3 chr13 18132833 18133134 -101611764 - AluSx SINE Alu -12 300 1 835 279 69 47 chr13 18133134 18133403 -101611495 - L1MEd LINE L1 -5099 1020 731 301 375 125 0 chr13 18133538 18133722 -101611176 - L1MEd LINE L1 -5453 666 460 967 256 60 78 chr13 18133892 18134408 -101610490 + L2 LINE L2 2419 2925 -389 2247 107 0 16 chr13 18134483 18134791 -101610107 - AluSg1 SINE Alu -6 303 1 1885 159 7 13 chr13 18134794 18135095 -101609803 - AluJo SINE Alu -7 305 7 1200 251 176 12 chr13 18135171 18135349 -101609549 + L1ME1 LINE L1 5516 5663 -503 973 266 131 38 chr13 18135349 18135822 -101609076 + MLT2B1 LTR ERVL 1 517 -3 1200 251 176 12 chr13 18135822 18136142 -101608756 + L1ME1 LINE L1 5663 6096 -70 234 191 0 0 chr13 18136160 18136207 -101608691 + A-rich Low_complexity Low_complexity 1 47 0 899 172 35 7 chr13 18136212 18136441 -101608457 + AluJb SINE Alu 1 302 -10 1770 147 25 3 chr13 18136442 18136762 -101608136 + AluJb SINE Alu 1 312 0 201 39 0 0 chr13 18136843 18136869 -101608029 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 225 337 69 20 chr13 18137013 18137114 -101607784 - MIR SINE MIR -55 153 48 216 0 0 0 chr13 18137126 18137150 -101607748 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2277 113 0 0 chr13 18137152 18137445 -101607453 - AluSq SINE Alu -20 293 1 252 333 11 0 chr13 18137591 18137678 -101607220 - MIR SINE MIR -117 145 58 254 319 80 35 chr13 18137716 18137829 -101607069 - MIR SINE MIR -55 207 90 236 245 0 0 chr13 18137937 18137986 -101606912 + GA-rich Low_complexity Low_complexity 2 50 0 743 152 49 98 chr13 18138345 18138549 -101606349 + MLT1D LTR MaLR 1 194 -311 446 262 0 0 chr13 18138571 18138674 -101606224 + MLT1D LTR MaLR 387 489 -16 329 220 200 0 chr13 18138958 18139058 -101605840 - MER69 DNA AcHobo -2 2524 2405 350 241 86 0 chr13 18139155 18139271 -101605627 - MER69 DNA AcHobo -2383 143 18 2222 116 0 28 chr13 18139367 18139687 -101605211 + AluSx SINE Alu 1 311 -1 304 190 0 35 chr13 18139694 18139752 -101605146 - L1MC4 LINE L1 -1339 6703 6648 2343 116 0 0 chr13 18140049 18140359 -101604539 - AluSx SINE Alu -2 310 1 1336 173 110 18 chr13 18140478 18140750 -101604148 + AluSg SINE Alu 12 308 -2 917 204 0 17 chr13 18141191 18141367 -101603531 - FRAM SINE Alu -11 165 1 24 53 0 0 chr13 18141480 18141518 -101603380 + AT_rich Low_complexity Low_complexity 1 38 0 1449 158 39 56 chr13 18141956 18142068 -101602830 + AluJb SINE Alu 15 127 -185 197 0 71 0 chr13 18142068 18142096 -101602802 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 1449 158 39 56 chr13 18142096 18142267 -101602631 + AluJb SINE Alu 127 293 -19 2130 89 0 71 chr13 18142470 18142795 -101602103 - AluSx SINE Alu -10 302 1 222 297 22 66 chr13 18143524 18143706 -101601192 + C-rich Low_complexity Low_complexity 1 174 0 773 165 41 47 chr13 18144086 18144235 -101600663 + AluJb SINE Alu 137 286 -26 387 0 0 0 chr13 18144235 18144278 -101600620 + (CA)n Simple_repeat Simple_repeat 2 44 0 773 165 41 47 chr13 18144278 18144298 -101600600 + AluJb SINE Alu 286 305 -7 434 264 110 28 chr13 18144465 18144647 -101600251 + L2 LINE L2 3117 3313 0 313 233 56 33 chr13 18144658 18144748 -101600150 + MIR SINE MIR 58 149 -113 1071 153 98 31 chr13 18144749 18145004 -101599894 + LTR54B LTR ERV1 1 272 -226 3323 82 68 78 chr13 18145005 18145515 -101599383 - MER51A LTR ERV1 -8 626 122 2420 88 0 0 chr13 18145515 18145822 -101599076 - AluSq SINE Alu -6 307 1 3323 82 68 78 chr13 18145822 18145943 -101598955 - MER51A LTR ERV1 -512 122 1 605 248 59 5 chr13 18145945 18146147 -101598751 + LTR54B LTR ERV1 281 493 -5 525 238 63 7 chr13 18146318 18146461 -101598437 - MER21B LTR ERV1 -615 248 98 507 221 9 38 chr13 18146436 18146595 -101598303 - MER21B LTR ERV1 -410 195 12 * 820 161 19 6 chr13 18146600 18146762 -101598136 - L1M3 LINE L1 -714 5466 5303 1115 70 0 0 chr13 18146768 18146897 -101598001 + AluSq/x SINE Alu 7 135 -178 2190 123 0 7 chr13 18146897 18147207 -101597691 + AluSc SINE Alu 1 308 -1 1466 206 79 21 chr13 18147239 18147549 -101597349 - L1 LINE L1 -833 5313 4987 2009 107 68 0 chr13 18147549 18147829 -101597069 - AluSx SINE Alu -13 299 1 1466 206 79 21 chr13 18147829 18147956 -101596942 - L1 LINE L1 -1159 4987 4869 258 217 67 0 chr13 18147956 18148016 -101596882 + L2 LINE L2 3238 3301 -12 196 337 63 21 chr13 18148046 18148141 -101596757 + MIR3 SINE MIR 110 208 0 2066 98 19 63 chr13 18148476 18148792 -101596106 - AluSx SINE Alu -10 302 1 539 278 60 56 chr13 18149105 18149339 -101595559 - L2 LINE L2 0 3313 3079 2323 112 3 3 chr13 18149362 18149674 -101595224 + AluSx SINE Alu 1 312 0 186 133 0 0 chr13 18149736 18149766 -101595132 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 249 220 0 0 chr13 18149766 18149816 -101595082 - L2 LINE L2 0 3313 3264 540 265 177 32 chr13 18150151 18150400 -101594498 + L3 LINE CR1 621 905 -672 183 217 43 0 chr13 18150471 18150517 -101594381 + L3 LINE CR1 902 949 -628 680 225 174 34 chr13 18150562 18150855 -101594043 + L1MC4a LINE L1 7062 7395 -413 2057 105 0 44 chr13 18150973 18151291 -101593607 - AluSx SINE Alu 0 305 1 293 222 16 0 chr13 18151291 18151354 -101593544 + MER5A DNA MER1_type 123 186 -3 1586 145 47 34 chr13 18151932 18152228 -101592670 - AluJo SINE Alu 0 312 13 21 57 0 0 chr13 18152830 18152865 -101592033 + GC_rich Low_complexity Low_complexity 1 35 0 510 264 25 12 chr13 18153212 18153375 -101591523 + MLT1D LTR MaLR 32 196 -309 312 337 10 10 chr13 18153793 18153891 -101591007 - L1ME1 LINE L1 -5 6161 6064 2435 49 0 3 chr13 18154019 18154333 -101590565 + AluSg SINE Alu 1 313 0 291 177 0 0 chr13 18154458 18154520 -101590378 + (CA)n Simple_repeat Simple_repeat 2 63 0 455 251 8 0 chr13 18154532 18154804 -101590094 + (CA)n Simple_repeat Simple_repeat 1 274 0 219 212 0 0 chr13 18154837 18154922 -101589976 + (CA)n Simple_repeat Simple_repeat 2 86 0 530 199 0 11 chr13 18154951 18154969 -101589929 + (CA)n Simple_repeat Simple_repeat 2 19 -161 2132 121 47 44 chr13 18154969 18155332 -101589566 - THE1B LTR MaLR 0 364 1 530 199 0 11 chr13 18155332 18155494 -101589404 + (CA)n Simple_repeat Simple_repeat 19 180 0 501 228 0 0 chr13 18155521 18155688 -101589210 + (CA)n Simple_repeat Simple_repeat 2 168 0 198 0 0 0 chr13 18156492 18156514 -101588384 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 195 260 65 26 chr13 18156515 18156592 -101588306 - L2 LINE L2 -14 3299 3220 1316 127 23 0 chr13 18156746 18156966 -101587932 - MER50 LTR ERV1 -503 231 7 28 48 0 0 chr13 18157373 18157415 -101587483 + AT_rich Low_complexity Low_complexity 1 42 0 2180 150 92 20 chr13 18157415 18157874 -101587024 - L1MB3 LINE L1 -2 6181 5690 390 207 117 18 chr13 18158082 18158193 -101586705 - MIR SINE MIR -111 151 30 2187 103 3 3 chr13 18158698 18159017 -101585881 - AluSc SINE Alu 0 309 1 2098 122 3 14 chr13 18159017 18159313 -101585585 - AluJb SINE Alu -19 293 1 21 0 0 0 chr13 18159316 18159337 -101585561 + AT_rich Low_complexity Low_complexity 1 21 0 2289 159 18 0 chr13 18159828 18160218 -101584680 - L1MB3 LINE L1 -3 6180 5784 1431 139 58 95 chr13 18160220 18160375 -101584523 - AluJo SINE Alu -17 295 136 2436 95 0 13 chr13 18160375 18160692 -101584206 - AluSq SINE Alu 0 313 1 2436 75 3 0 chr13 18160697 18160990 -101583908 - AluSq SINE Alu -19 294 1 1431 139 58 95 chr13 18160990 18161016 -101583882 - AluJo SINE Alu -180 132 107 189 0 0 0 chr13 18161016 18161037 -101583861 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1431 139 58 95 chr13 18161037 18161142 -101583756 - AluJo SINE Alu -205 107 13 257 285 179 66 chr13 18161250 18161401 -101583497 - MIR SINE MIR -12 250 83 1180 130 4 100 chr13 18161845 18162084 -101582814 - AluJo SINE Alu -17 295 80 442 147 54 116 chr13 18164694 18164823 -101580075 + MER105 DNA DNA 29 149 -55 225 260 0 0 chr13 18167596 18167646 -101577252 + CT-rich Low_complexity Low_complexity 4 53 0 449 207 82 67 chr13 18168346 18168554 -101576344 + MER113 DNA MER1_type? 7 217 -304 559 245 130 10 chr13 18168663 18168863 -101576035 + MER113 DNA MER1_type? 257 480 -41 2080 131 0 3 chr13 18169561 18169851 -101575047 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr13 18169851 18169876 -101575022 + AT_rich Low_complexity Low_complexity 1 25 0 253 203 31 16 chr13 18171392 18171456 -101573442 + L1ME4a LINE L1 5615 5679 -442 287 302 114 48 chr13 18171649 18172026 -101572872 + MLT1J LTR MaLR 110 511 0 411 235 176 20 chr13 18172068 18172323 -101572575 + L1ME4a LINE L1 5773 6067 -54 2026 153 3 7 chr13 18172913 18173221 -101571677 - AluJo SINE Alu -5 307 1 1665 188 31 0 chr13 18173879 18174167 -101570731 + AluJo SINE Alu 6 302 -10 211 256 0 0 chr13 18174488 18174531 -101570367 + L2 LINE L2 3271 3313 0 261 0 0 0 chr13 18175035 18175064 -101569834 + (TG)n Simple_repeat Simple_repeat 1 29 0 250 265 364 20 chr13 18176282 18176780 -101568118 - L2 LINE L2 -337 2977 2309 1974 143 17 0 chr13 18177055 18177342 -101567556 - AluSx SINE Alu -20 292 1 4091 54 0 0 chr13 18177959 18178457 -101566441 + L1PA5 LINE L1 5656 6153 -1 317 321 55 36 chr13 18178693 18178858 -101566040 - L1M4 LINE L1 -1410 4736 4569 470 267 158 39 chr13 18178973 18179333 -101565565 - L1M4 LINE L1 -1717 4429 4027 1853 166 0 27 chr13 18179521 18179816 -101565082 - AluJo SINE Alu -20 292 6 307 280 155 7 chr13 18180045 18180316 -101564582 - L1M4 LINE L1 -2639 3507 3197 243 0 0 0 chr13 18180963 18180990 -101563908 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1636 148 32 46 chr13 18180990 18181274 -101563624 - AluSx SINE Alu -32 280 1 432 308 70 29 chr13 18182083 18182255 -101562643 - MIR3 SINE MIR 0 208 30 1424 162 4 29 chr13 18182561 18182802 -101562096 - AluJo SINE Alu -77 235 1 2240 89 26 26 chr13 18183292 18183605 -101561293 + AluSq SINE Alu 1 313 0 263 318 103 32 chr13 18183827 18183953 -101560945 - L2 LINE L2 -15 3257 3123 277 111 0 0 chr13 18184015 18184051 -101560847 + AluY SINE Alu 140 175 -126 794 31 0 0 chr13 18184051 18184149 -101560749 + AluSg/x SINE Alu 213 310 0 237 235 20 29 chr13 18185464 18185566 -101559332 + (CCCCG)n Simple_repeat Simple_repeat 5 105 0 47 33 0 0 chr13 18187263 18187324 -101557574 + AT_rich Low_complexity Low_complexity 1 61 0 2768 143 40 6 chr13 18187327 18187822 -101557076 + L1MB3 LINE L1 5671 6182 -1 183 222 0 0 chr13 18188305 18188341 -101556557 + L2 LINE L2 3271 3306 -7 2165 105 0 10 chr13 18188501 18188815 -101556083 + AluSx SINE Alu 1 311 -1 2316 88 0 19 chr13 18188929 18189247 -101555651 + AluSq SINE Alu 1 312 -1 1513 131 20 81 chr13 18189445 18189783 -101555115 + AluJb SINE Alu 4 323 0 1748 134 76 0 chr13 18190695 18190985 -101553913 + AluJb SINE Alu 1 312 0 283 314 6 45 chr13 18191258 18191414 -101553484 - MIR SINE MIR -44 218 69 1672 171 3 13 chr13 18191908 18192218 -101552680 + AluJo SINE Alu 5 311 -1 198 342 70 44 chr13 18192897 18193055 -101551843 + L2 LINE L2 319 480 -2834 276 283 58 96 chr13 18193271 18193511 -101551387 + L3 LINE CR1 1008 1238 -339 794 208 134 19 chr13 18193518 18193734 -101551164 - MIR SINE MIR -12 250 10 202 321 0 0 chr13 18193734 18193790 -101551108 + (TG)n Simple_repeat Simple_repeat 1 56 0 212 342 49 71 chr13 18193790 18194056 -101550842 + L3 LINE CR1 1274 1533 -44 1531 148 32 0 chr13 18194424 18194674 -101550224 - AluJb SINE Alu -54 258 1 1936 156 47 0 chr13 18194793 18195113 -101549785 + MER7A DNA MER2_type 14 346 0 440 251 106 58 chr13 18195358 18195565 -101549333 + MIR SINE MIR 46 262 0 377 279 62 37 chr13 18196695 18196856 -101548042 - MER104 DNA Tc2 -3 177 13 3101 208 18 15 chr13 18197209 18198156 -101546742 + L1M3 LINE L1 4629 5583 -600 310 239 33 43 chr13 18200418 18200536 -101544362 + MIR SINE MIR 70 187 -68 1654 162 13 33 chr13 18203021 18203323 -101541575 - AluJo SINE Alu -16 296 1 942 167 0 6 chr13 18205280 18205448 -101539450 - AluJb SINE Alu -17 295 129 2952 132 29 2 chr13 18205907 18206384 -101538514 - L1MB3 LINE L1 -19 6164 5675 945 302 143 8 chr13 18207586 18207950 -101536948 + L3 LINE CR1 436 848 -729 287 106 0 0 chr13 18207968 18208015 -101536883 + Alu SINE Alu 253 299 -1 2023 136 0 7 chr13 18208176 18208484 -101536414 - AluSx SINE Alu -6 306 1 356 276 138 45 chr13 18208497 18208765 -101536133 + L1ME4a LINE L1 5826 6118 -3 260 291 90 8 chr13 18209067 18209201 -101535697 + L3 LINE CR1 1177 1321 -256 229 250 171 0 chr13 18209553 18209629 -101535269 + L2 LINE L2 3184 3272 0 241 247 55 103 chr13 18209797 18209943 -101534955 + MIR SINE MIR 76 214 -48 227 241 175 36 chr13 18210271 18210408 -101534490 - MIR SINE MIR -15 247 92 1660 183 7 13 chr13 18210862 18211168 -101533730 - AluJb SINE Alu -8 304 1 1368 169 0 0 chr13 18211527 18211758 -101533140 + AluJb SINE Alu 1 231 -81 22 0 0 0 chr13 18217298 18217320 -101527578 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 18217460 18217483 -101527415 + GC_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr13 18217678 18217711 -101527187 + GC_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 18218416 18218437 -101526461 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 18220878 18220899 -101523999 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 18222127 18222154 -101522744 + (A)n Simple_repeat Simple_repeat 1 27 0 479 214 28 84 chr13 18222332 18222510 -101522388 - MER112 DNA MER1_type -92 168 1 1313 150 127 29 chr13 18223212 18223519 -101521379 - MER44D DNA MER2_type -2 607 1 612 247 66 29 chr13 18223895 18224138 -101520760 - L1MC4a LINE L1 -1850 5958 5707 232 229 52 0 chr13 18224146 18224242 -101520656 + L1MCc LINE L1 19 119 -6304 242 273 27 64 chr13 18224897 18225007 -101519891 + L1MCc LINE L1 1291 1396 -5027 * 3217 237 63 31 chr13 18224995 18225186 -101519712 + L1MCc LINE L1 3044 3227 -3714 1720 140 45 3 chr13 18225186 18225478 -101519420 + AluSx SINE Alu 1 304 -8 3217 237 63 31 chr13 18225478 18226237 -101518661 + L1MCc LINE L1 3227 4048 -2893 1884 193 11 26 chr13 18226237 18226615 -101518283 - MLT1A2 LTR MaLR -2 372 1 3217 237 63 31 chr13 18226615 18226956 -101517942 + L1MCc LINE L1 4048 4377 -2564 764 264 50 4 chr13 18226975 18227201 -101517697 - L1MC4a LINE L1 -2119 5689 5459 2043 87 45 7 chr13 18227695 18227983 -101516915 - AluSx SINE Alu -13 299 1 326 253 71 82 chr13 18228061 18228231 -101516667 + L1MEd LINE L1 3 170 -5949 21 0 0 0 chr13 18229269 18229290 -101515608 + AT_rich Low_complexity Low_complexity 1 21 0 1831 134 26 10 chr13 18229852 18230159 -101514739 + AluSx SINE Alu 1 312 0 216 0 0 0 chr13 18230263 18230287 -101514611 + (CA)n Simple_repeat Simple_repeat 2 25 0 386 295 77 0 chr13 18230714 18230870 -101514028 - L1MC/D LINE L1 -2053 5755 5588 219 266 94 0 chr13 18231162 18231226 -101513672 + MIR SINE MIR 76 145 -63 2993 37 0 3 chr13 18231766 18232120 -101512778 + L1PA3 LINE L1 5803 6155 0 480 275 38 25 chr13 18232563 18232723 -101512175 + MER5A DNA MER1_type 27 188 -1 2051 105 0 3 chr13 18232775 18233061 -101511837 + AluSq SINE Alu 1 285 -28 1094 115 0 0 chr13 18232905 18233061 -101511837 + AluSp SINE Alu 130 344 0 311 68 17 17 chr13 18233061 18233120 -101511778 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 2419 71 0 0 chr13 18233160 18233468 -101511430 + AluY SINE Alu 1 308 -3 187 297 27 54 chr13 18233469 18233543 -101511355 - MER5A DNA MER1_type -55 134 63 1735 157 111 12 chr13 18233580 18233912 -101510986 + MLT1A1 LTR MaLR 1 365 0 282 299 136 38 chr13 18234954 18235299 -101509599 - L2 LINE L2 -4 3268 2890 7338 176 113 113 chr13 18235458 18235538 -101509360 + L1MD1 LINE L1 276 354 -6186 2178 79 3 3 chr13 18235538 18235830 -101509068 + AluSc SINE Alu 1 292 -17 7338 176 113 113 chr13 18235830 18236439 -101508459 + L1MD1 LINE L1 354 961 -5579 2015 125 0 13 chr13 18236439 18236750 -101508148 - AluSq SINE Alu -6 307 1 7338 176 113 113 chr13 18236750 18237433 -101507465 + L1MD1 LINE L1 961 1642 -4898 1381 152 4 61 chr13 18237433 18237696 -101507202 + AluSx SINE Alu 1 248 -64 7338 176 113 113 chr13 18237696 18238899 -101505999 + L1MD1 LINE L1 1642 3126 -3414 2200 200 29 51 chr13 18238921 18239467 -101505431 - MER74A LTR ERVL -24 534 1 1825 215 47 31 chr13 18239467 18242806 -101502092 + L1MD1 LINE L1 3126 6636 0 494 219 83 49 chr13 18242844 18243049 -101501849 + L1MC5 LINE L1 7655 7866 -95 364 266 65 32 chr13 18243092 18243216 -101501682 + MIR SINE MIR 2 129 -133 566 61 24 0 chr13 18243219 18243301 -101501597 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 2263 94 3 0 chr13 18243312 18243620 -101501278 - AluSx SINE Alu -3 309 1 341 213 150 0 chr13 18243622 18243702 -101501196 + MIR SINE MIR 101 192 -70 1295 226 20 33 chr13 18243870 18244176 -101500722 - AluJo SINE Alu 0 302 1 1624 173 19 25 chr13 18244472 18244790 -101500108 - L1MA10 LINE L1 -593 5741 5426 2831 178 21 22 chr13 18244790 18245369 -101499529 + L1MA10 LINE L1 5755 6333 -1 2134 128 0 0 chr13 18245548 18245860 -101499038 + AluSx SINE Alu 1 312 0 360 234 81 27 chr13 18245917 18246028 -101498870 + L1MC5 LINE L1 7662 7778 -183 2205 77 0 13 chr13 18248346 18248644 -101496254 + AluY SINE Alu 1 294 -17 2284 174 31 2 chr13 18249828 18250248 -101494650 - L1MB2 LINE L1 -150 6021 5590 193 323 98 45 chr13 18250281 18250414 -101494484 + L3 LINE CR1 137 276 -1301 221 350 136 14 chr13 18250858 18251072 -101493826 + L3 LINE CR1 1268 1507 -70 2384 68 0 3 chr13 18253136 18253446 -101491452 - AluY SINE Alu -2 309 1 243 0 0 0 chr13 18253786 18253813 -101491085 + (A)n Simple_repeat Simple_repeat 1 27 0 1601 141 40 59 chr13 18253813 18254117 -101490781 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 18254455 18254476 -101490422 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr13 18256863 18256905 -101487993 + GC_rich Low_complexity Low_complexity 1 42 0 1999 95 3 7 chr13 18258119 18258445 -101486453 - AluSx SINE Alu 0 312 6 2040 154 12 86 chr13 18259178 18259606 -101485292 - MSTD LTR MaLR 0 396 1 3775 227 101 104 chr13 18259618 18259941 -101484957 - MSTB-int LTR MaLR -14 1637 1315 2381 172 49 5 chr13 18259941 18260009 -101484889 - MSTB LTR MaLR 0 426 362 1845 135 6 32 chr13 18260009 18260320 -101484578 + AluJo SINE Alu 1 303 -9 2381 172 49 5 chr13 18260320 18260659 -101484239 - MSTB LTR MaLR -64 362 1 3775 227 101 104 chr13 18260659 18261415 -101483483 - MSTB-int LTR MaLR -336 1315 562 2264 66 0 3 chr13 18261415 18261703 -101483195 - AluY SINE Alu -15 296 10 3775 227 101 104 chr13 18261703 18262259 -101482639 - MSTB-int LTR MaLR -1089 562 6 1582 204 163 12 chr13 18262275 18262751 -101482147 - L1MC3 LINE L1 -373 7412 6856 189 0 0 0 chr13 18262751 18262772 -101482126 + (TG)n Simple_repeat Simple_repeat 2 22 0 1582 204 163 12 chr13 18262772 18262866 -101482032 - L1MC3 LINE L1 -929 6856 6778 336 290 14 69 chr13 18262899 18263044 -101481854 + L2 LINE L2 3136 3272 0 1448 182 62 3 chr13 18264673 18264997 -101479901 - MLT2D LTR ERVL -52 362 20 207 0 0 0 chr13 18265630 18265653 -101479245 + (TTG)n Simple_repeat Simple_repeat 2 24 0 209 294 109 34 chr13 18266895 18267014 -101477884 + MIR SINE MIR 108 235 -27 1877 231 2 23 chr13 18267572 18268043 -101476855 + L1M4 LINE L1 4867 5327 -819 22641 54 13 3 chr13 18268045 18270836 -101474062 + L1P LINE L1 4 2823 -3323 1787 155 7 3 chr13 18274097 18274407 -101470491 - AluJb SINE Alu -1 311 1 334 246 26 18 chr13 18274741 18274855 -101470043 - L1MEc LINE L1 -3108 3107 2993 57 28 0 0 chr13 18274860 18274931 -101469967 + AT_rich Low_complexity Low_complexity 1 71 0 2651 247 31 67 chr13 18274936 18275339 -101469559 - L1MEc LINE L1 -3216 2999 2583 1721 146 34 10 chr13 18275339 18275633 -101469265 - AluSx SINE Alu -3 309 9 2651 247 31 67 chr13 18275633 18276225 -101468673 - L1MEc LINE L1 -3632 2583 1971 789 122 257 0 chr13 18276225 18276345 -101468553 - MER5A DNA MER1_type -1 188 100 234 0 0 0 chr13 18276345 18276371 -101468527 + (CTG)n Simple_repeat Simple_repeat 1 26 0 789 122 257 0 chr13 18276371 18276398 -101468500 - MER5A DNA MER1_type -89 100 3 2651 247 31 67 chr13 18276398 18276427 -101468471 - L1MEc LINE L1 -4244 1971 1942 2077 121 0 9 chr13 18276427 18276742 -101468156 - AluSx SINE Alu 0 312 1 2651 247 31 67 chr13 18276742 18277108 -101467790 - L1MEc LINE L1 -4273 1942 1726 2175 97 0 0 chr13 18277108 18277396 -101467502 - AluSx SINE Alu -24 288 1 2651 247 31 67 chr13 18277396 18277543 -101467355 - L1MEc LINE L1 -4489 1726 1575 2373 161 50 10 chr13 18277935 18278339 -101466559 - MSTB LTR MaLR -4 422 3 351 293 78 42 chr13 18279919 18280086 -101464812 - MIR SINE MIR -30 232 60 2241 97 0 3 chr13 18280228 18280527 -101464371 + AluSx SINE Alu 1 298 -14 1221 138 0 0 chr13 18280732 18280921 -101463977 - AluSg/x SINE Alu -4 308 120 2009 125 0 0 chr13 18280931 18281219 -101463679 - AluSx SINE Alu -22 290 3 530 221 137 16 chr13 18282552 18282742 -101462156 - MLT1H1 LTR MaLR 0 555 343 270 315 54 36 chr13 18283056 18283167 -101461731 - MIR SINE MIR -69 139 27 380 293 0 45 chr13 18283191 18283324 -101461574 - MARNA DNA Mariner -227 359 233 180 227 0 23 chr13 18283518 18283562 -101461336 + MIR3 SINE MIR 144 186 -22 1424 158 120 19 chr13 18283937 18283948 -101460950 - AluJo SINE Alu -9 293 285 194 0 39 0 chr13 18283948 18283974 -101460924 + (GA)n Simple_repeat Simple_repeat 1 27 0 1424 158 120 19 chr13 18283974 18284228 -101460670 - AluJo SINE Alu -17 285 1 182 36 0 36 chr13 18284284 18284312 -101460586 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 5681 147 30 13 chr13 18284538 18285329 -101459569 - L1MA4 LINE L1 -1 6299 5487 2498 60 3 0 chr13 18285329 18285628 -101459270 - AluY SINE Alu -11 300 1 5681 147 30 13 chr13 18285628 18285813 -101459085 - L1MA4 LINE L1 -813 5487 5307 330 320 10 0 chr13 18285957 18286054 -101458844 - L2 LINE L2 0 3272 3175 2389 97 3 0 chr13 18286800 18287111 -101457787 - AluSq SINE Alu -1 312 1 226 203 54 27 chr13 18287303 18287377 -101457521 - MIR SINE MIR -103 159 84 29 0 0 0 chr13 18287380 18287409 -101457489 + AT_rich Low_complexity Low_complexity 1 29 0 1032 104 8 0 chr13 18287409 18287543 -101457355 - AluJo SINE Alu -177 135 1 2377 99 3 0 chr13 18287909 18288221 -101456677 + AluSp SINE Alu 1 313 0 1047 262 52 56 chr13 18288290 18288794 -101456104 - HAL1 LINE L1 -4 2503 2002 414 276 99 17 chr13 18288960 18289141 -101455757 - HAL1 LINE L1 -702 1805 1610 261 321 114 15 chr13 18289139 18289270 -101455628 - HAL1 LINE L1 -2336 171 28 * 320 319 43 0 chr13 18289402 18289518 -101455380 - MIR3 SINE MIR -74 134 14 514 100 0 12 chr13 18289923 18290003 -101454895 + MADE1 DNA Mariner 1 79 -1 829 199 0 23 chr13 18292254 18292425 -101452473 + FRAM SINE Alu 8 174 -2 2312 106 0 3 chr13 18292679 18292982 -101451916 - AluSx SINE Alu -10 302 1 2432 63 0 13 chr13 18293391 18293692 -101451206 + AluY SINE Alu 1 297 -14 382 279 110 0 chr13 18293780 18293934 -101450964 - MIR SINE MIR 0 262 92 669 232 43 53 chr13 18294440 18294647 -101450251 - MER3 DNA MER1_type -2 207 3 2514 81 0 3 chr13 18294703 18295010 -101449888 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr13 18295377 18295397 -101449501 + (TC)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr13 18296066 18296094 -101448804 + AT_rich Low_complexity Low_complexity 1 28 0 922 213 32 101 chr13 18296995 18297333 -101447565 + MLT1J LTR MaLR 25 339 -172 267 107 125 0 chr13 18297643 18297699 -101447199 - Alu SINE Alu 0 301 239 1556 226 3 0 chr13 18298796 18299106 -101445792 + MER82 DNA MER2_type 2 312 -341 375 272 123 73 chr13 18299111 18299185 -101445713 + L1M4 LINE L1 4584 4653 -1493 1654 153 62 7 chr13 18299185 18299345 -101445553 + L1MA9 LINE L1 5987 6137 -175 387 0 0 0 chr13 18299345 18299388 -101445510 + (CA)n Simple_repeat Simple_repeat 2 44 0 1654 153 62 7 chr13 18299388 18299535 -101445363 + L1MA9 LINE L1 6137 6311 -1 375 272 123 73 chr13 18299535 18300014 -101444884 + L1M4 LINE L1 4653 5176 -970 2527 68 0 7 chr13 18300014 18300322 -101444576 + AluY SINE Alu 1 306 -5 375 272 123 73 chr13 18300322 18300407 -101444491 + L1M4 LINE L1 5176 5255 -891 1085 151 17 6 chr13 18300412 18300584 -101444314 + AluSg/x SINE Alu 135 308 -2 800 180 9 104 chr13 18300659 18300870 -101444028 - MLT1B LTR MaLR -197 193 3 1493 161 31 93 chr13 18300889 18301120 -101443778 - MLT1B-int LTR MaLR -17 1718 1511 2730 185 4 0 chr13 18301120 18301601 -101443297 + L1PB4 LINE L1 5669 6151 -5 1493 161 31 93 chr13 18301601 18301693 -101443205 - MLT1B-int LTR MaLR -224 1511 1415 2017 141 7 7 chr13 18301859 18302163 -101442735 + AluSx SINE Alu 1 304 -8 301 342 7 7 chr13 18302273 18302425 -101442473 + L1MC/D LINE L1 4925 5076 -1070 3847 156 62 40 chr13 18302443 18302721 -101442177 + L1PA16 LINE L1 4683 4953 -1213 3847 129 52 53 chr13 18302721 18303455 -101441443 + L1PA16 LINE L1 5431 6166 0 3847 156 62 40 chr13 18303455 18303790 -101441108 + L1PA16 LINE L1 4953 6166 0 1804 160 3 0 chr13 18303972 18304286 -101440612 - AluSx SINE Alu 0 315 1 23 0 0 0 chr13 18305577 18305600 -101439298 + AT_rich Low_complexity Low_complexity 1 23 0 2185 104 7 0 chr13 18305685 18305964 -101438934 + AluSq SINE Alu 1 281 -32 395 191 0 64 chr13 18305976 18306070 -101438828 - L1MC4 LINE L1 -1339 6703 6616 276 229 0 0 chr13 18306077 18306160 -101438738 + (TA)n Simple_repeat Simple_repeat 1 83 0 249 292 42 21 chr13 18306219 18306315 -101438583 + MER5B DNA MER1_type 1 98 -80 280 213 113 43 chr13 18306564 18306705 -101438193 + L1MC/D LINE L1 5317 5467 -2341 2689 118 14 21 chr13 18306730 18307164 -101437734 - L1PA13 LINE L1 0 6163 5733 356 131 16 0 chr13 18307164 18307225 -101437673 + MER52C LTR ERV1 1 62 -1216 6016 122 101 28 chr13 18307225 18308264 -101436634 + MER52C LTR ERV1 164 1278 0 4028 98 17 41 chr13 18308265 18308848 -101436050 + MER52C-int LTR ERV1 3 571 -6520 4154 166 28 4 chr13 18308948 18310210 -101434688 + MER52C-int LTR ERV1 1775 3204 -3887 3972 170 24 15 chr13 18310229 18310910 -101433988 + MER52C-int LTR ERV1 807 1493 -5598 697 139 70 0 chr13 18310930 18311045 -101433853 + MER52C-int LTR ERV1 1006 1128 -4818 2506 167 54 32 chr13 18311049 18311716 -101433182 + MER52C-int LTR ERV1 1416 1990 -3596 3182 148 75 8 chr13 18311761 18312263 -101432635 + MER52C-int LTR ERV1 692 1259 -6557 360 0 0 0 chr13 18312263 18312303 -101432595 + (TG)n Simple_repeat Simple_repeat 2 41 0 3182 148 75 8 chr13 18312303 18312423 -101432475 + MER52C-int LTR ERV1 1259 1369 -6447 260 128 0 0 chr13 18312401 18312448 -101432450 + MER52C-int LTR ERV1 1064 1110 -7010 * 2655 203 157 68 chr13 18312447 18313612 -101431286 + MER52C-int LTR ERV1 4480 5748 -1670 299 83 62 0 chr13 18313610 18313658 -101431240 + MER52C-int LTR ERV1 5976 6026 -1179 * 1408 91 10 20 chr13 18313660 18313858 -101431040 + MER52C-int LTR ERV1 6892 7087 -4 1398 146 64 6 chr13 18313858 18314127 -101430771 + MER52C LTR ERV1 23 390 -888 3760 109 9 13 chr13 18314130 18315113 -101429785 - L1P4 LINE L1 -427 5736 4761 584 298 58 4 chr13 18315158 18315400 -101429498 + L1ME4a LINE L1 5574 5828 -293 352 264 98 12 chr13 18315555 18315718 -101429180 - MIR SINE MIR 0 262 86 27 0 0 0 chr13 18315895 18315922 -101428976 + AT_rich Low_complexity Low_complexity 1 27 0 205 273 0 0 chr13 18315991 18316035 -101428863 + (TG)n Simple_repeat Simple_repeat 2 45 0 214 227 0 0 chr13 18316262 18316306 -101428592 + MIR3 SINE MIR 158 201 -7 3412 168 28 23 chr13 18316443 18317098 -101427800 - L1MB3 LINE L1 -3 6180 5523 2100 166 19 27 chr13 18317162 18317643 -101427255 + pTR5 LTR ERV1 738 1214 -1224 456 306 56 49 chr13 18318394 18318678 -101426220 - L1ME1 LINE L1 -2 6164 5879 263 178 0 40 chr13 18319017 18319118 -101425780 + (TA)n Simple_repeat Simple_repeat 1 97 0 1604 171 43 20 chr13 18319993 18320298 -101424600 - AluJo SINE Alu 0 312 1 37 39 0 0 chr13 18320886 18320937 -101423961 + AT_rich Low_complexity Low_complexity 1 51 0 780 247 43 28 chr13 18321516 18321771 -101423127 - MLT1C LTR MaLR -1 466 208 972 267 102 27 chr13 18321773 18321843 -101423055 - HAL1 LINE L1 -423 2084 2021 198 0 0 0 chr13 18321843 18321865 -101423033 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 972 267 102 27 chr13 18321865 18322243 -101422655 - HAL1 LINE L1 -486 2021 1602 555 222 31 17 chr13 18322310 18322527 -101422371 - L1MCc LINE L1 -4890 1533 1434 803 239 0 0 chr13 18322527 18322686 -101422212 - FRAM SINE Alu -3 163 5 555 222 31 17 chr13 18322686 18322715 -101422183 - L1MCc LINE L1 -4989 1434 1407 2020 261 104 59 chr13 18322725 18323838 -101421060 - L1MCc LINE L1 -5238 1185 23 259 235 289 51 chr13 18323845 18324160 -101420738 - HAL1 LINE L1 -1004 1503 1114 263 269 60 101 chr13 18324172 18324321 -101420577 - L1M4 LINE L1 -5692 850 708 304 302 55 33 chr13 18324420 18324602 -101420296 - L1M4 LINE L1 -6319 223 38 525 274 106 43 chr13 18324641 18324991 -101419907 - HAL1 LINE L1 -1398 1109 738 379 265 53 15 chr13 18325049 18325181 -101419717 - HAL1 LINE L1 -1966 541 405 380 243 48 90 chr13 18325334 18325523 -101419375 - HAL1 LINE L1 -2311 196 16 182 356 79 10 chr13 18327134 18327235 -101417663 + L2 LINE L2 3137 3244 -28 203 289 66 42 chr13 18327535 18327661 -101417237 - MIR SINE MIR -68 140 35 515 263 96 17 chr13 18327871 18328092 -101416806 - MIR SINE MIR -18 244 3 432 293 45 0 chr13 18329004 18329137 -101415761 - L2 LINE L2 0 3272 3134 2294 116 3 0 chr13 18329155 18329466 -101415432 + AluSx SINE Alu 1 312 0 1604 265 64 49 chr13 18329937 18330878 -101414020 + L1MC5 LINE L1 6096 7072 -889 2799 159 37 33 chr13 18330905 18331396 -101413502 - LTR42 LTR ERVL 0 495 3 898 229 112 46 chr13 18331411 18331847 -101413051 + L1MC5 LINE L1 7269 7733 -228 255 309 73 15 chr13 18332331 18332535 -101412363 + L1MEc LINE L1 898 1113 -6025 418 288 69 2 chr13 18332910 18333128 -101411770 + L1MEc LINE L1 1379 1680 -5323 307 361 0 0 chr13 18333178 18333311 -101411587 + LTR16B LTR ERVL 1 133 -331 3151 264 72 23 chr13 18333318 18334600 -101410298 + L1MEc LINE L1 2295 3512 -3445 1993 157 3 10 chr13 18334600 18334913 -101409985 - AluSx SINE Alu -1 311 1 3151 264 72 23 chr13 18334913 18335568 -101409330 + L1MEc LINE L1 3512 4422 -2535 2049 116 34 7 chr13 18335568 18335861 -101409037 + AluSx SINE Alu 1 301 -11 3151 264 72 23 chr13 18335861 18336037 -101408861 + L1MEc LINE L1 4422 4588 -2369 263 233 8 42 chr13 18336105 18336225 -101408673 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 25 0 0 0 chr13 18336576 18336601 -101408297 + AT_rich Low_complexity Low_complexity 1 25 0 434 286 7 7 chr13 18337288 18337435 -101407463 + LTR16B LTR ERVL 1 147 -317 417 266 89 13 chr13 18337465 18337623 -101407275 + LTR16B LTR ERVL 293 462 -2 230 272 93 107 chr13 18337976 18338417 -101406481 - L2 LINE L2 -666 2648 2214 891 128 8 8 chr13 18340984 18341109 -101403789 + AluSq/x SINE Alu 1 125 -188 201 147 0 0 chr13 18341968 18342002 -101402896 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2023 129 7 0 chr13 18342007 18342285 -101402613 - AluSx SINE Alu -32 280 1 6324 156 36 13 chr13 18342569 18343624 -101401274 + ERVL-D LTR ERVL 3806 4884 -880 2968 154 31 19 chr13 18343624 18344164 -101400734 + ERVL-D LTR ERVL 5211 5757 -7 1403 204 143 30 chr13 18344164 18344536 -101400362 + MLT2D LTR ERVL 1 414 0 2434 82 0 3 chr13 18344630 18344935 -101399963 - AluY SINE Alu -7 304 1 489 234 113 63 chr13 18346192 18346431 -101398467 - MER112 DNA MER1_type -7 253 3 3050 171 49 4 chr13 18346756 18347287 -101397611 - MER41D LTR ERV1 -2 555 1 413 193 61 35 chr13 18347545 18347659 -101397239 + MER21B LTR ERV1 690 806 -57 1828 194 21 5 chr13 18347686 18348063 -101396835 + L1MB4 LINE L1 5792 6174 -6 349 200 0 0 chr13 18348118 18348183 -101396715 + L1MB8 LINE L1 6113 6177 -1 584 81 11 0 chr13 18348856 18348943 -101395955 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 1806 166 23 3 chr13 18348943 18349244 -101395654 - AluSx SINE Alu -5 307 1 2786 127 27 22 chr13 18349356 18349601 -101395297 + HUERS-P2 LTR ERV1 2187 2429 -659 2066 125 7 14 chr13 18349601 18349898 -101395000 + AluSq SINE Alu 1 295 -18 2786 127 27 22 chr13 18349898 18350471 -101394427 + HUERS-P2 LTR ERV1 2429 3061 -27 716 101 18 18 chr13 18350482 18350591 -101394307 - MER41D LTR ERV1 -448 109 1 3639 149 77 73 chr13 18350690 18351470 -101393428 + LTR1 LTR ERV1 3 785 0 189 355 47 0 chr13 18352454 18352561 -101392337 - L2 LINE L2 0 3272 3161 18438 93 2 3 chr13 18352894 18356358 -101388540 + L1PA8 LINE L1 2670 6165 -7 21 0 0 0 chr13 18356711 18356732 -101388166 + AT_rich Low_complexity Low_complexity 1 21 0 321 276 83 26 chr13 18357782 18357938 -101386960 - L3 LINE CR1 -289 1288 1124 266 353 0 10 chr13 18358036 18358138 -101386760 - L3 LINE CR1 -712 865 765 298 295 32 11 chr13 18358206 18358301 -101386597 + MIR SINE MIR 2 98 -164 1335 163 23 9 chr13 18358654 18359043 -101385855 - LTR32 LTR ERVL 0 471 15 254 340 52 0 chr13 18359677 18359774 -101385124 - L3 LINE CR1 -1134 443 342 288 177 62 73 chr13 18360108 18360204 -101384694 - L1ME4a LINE L1 -63 6058 5964 953 249 94 57 chr13 18360234 18360428 -101384470 - HAL1b LINE L1 0 1348 1163 2263 57 17 37 chr13 18360428 18360728 -101384170 + AluSg SINE Alu 1 294 -16 953 249 94 57 chr13 18360728 18361096 -101383802 - HAL1b LINE L1 -185 1163 765 682 220 83 111 chr13 18361251 18361389 -101383509 - HAL1b LINE L1 -883 465 325 2047 146 0 16 chr13 18361389 18361704 -101383194 - AluSx SINE Alu -2 310 1 682 220 83 111 chr13 18361704 18361915 -101382983 - HAL1b LINE L1 -1023 325 126 1661 142 31 52 chr13 18363023 18363347 -101381551 + L1MB3 LINE L1 5655 5971 -212 970 161 30 13 chr13 18363391 18363600 -101381298 + L1MB3 LINE L1 5928 6142 -41 2364 98 0 9 chr13 18363600 18363915 -101380983 + AluSx SINE Alu 1 312 0 192 111 333 22 chr13 18364015 18364105 -101380793 - MER5A DNA MER1_type -68 121 4 488 302 47 6 chr13 18364993 18365165 -101379733 - MER112 DNA MER1_type -7 253 75 2776 13 0 13 chr13 18366246 18366553 -101378345 - AluYa5 SINE Alu -8 303 1 201 157 61 5 chr13 18366736 18366942 -101377956 + (TA)n Simple_repeat Simple_repeat 1 217 0 258 241 19 0 chr13 18367035 18367089 -101377809 + L2 LINE L2 3218 3272 0 1091 185 0 24 chr13 18367131 18367336 -101377562 - AluJo SINE Alu -17 295 96 216 336 82 33 chr13 18367353 18367475 -101377423 + MIR3 SINE MIR 33 160 -48 180 321 9 66 chr13 18367886 18367992 -101376906 - MIR SINE MIR -77 185 86 738 203 0 0 chr13 18368476 18368609 -101376289 + AluJ SINE Alu 1 133 -169 269 227 16 16 chr13 18368609 18368651 -101376247 + AluJ/F(R)AM SINE Alu 134 150 -152 250 231 0 0 chr13 18368651 18368703 -101376195 + LTR30 LTR ERV1 1 52 -670 1140 143 71 26 chr13 18368703 18368962 -101375936 + LTR12 LTR ERV1 55 1982 -456 304 120 0 0 chr13 18368983 18369033 -101375865 + LTR12 LTR ERV1 228 277 -437 227 262 0 36 chr13 18369033 18369117 -101375781 + LTR30 LTR ERV1 544 624 -98 564 124 12 99 chr13 18369119 18369244 -101375654 + LTR12 LTR ERV1 364 714 0 775 114 16 16 chr13 18369244 18369367 -101375531 + AluSg/x SINE Alu 172 294 -18 185 246 15 15 chr13 18370302 18370367 -101374531 + MIR3 SINE MIR 106 170 -38 443 130 0 26 chr13 18370630 18370707 -101374191 - MADE1 DNA Mariner -5 75 1 378 231 142 8 chr13 18370963 18371097 -101373801 + L1MB7 LINE L1 5564 5715 -406 368 252 79 8 chr13 18371599 18371726 -101373172 + L1ME4a LINE L1 5984 6119 -2 1780 186 28 25 chr13 18372026 18372387 -101372511 + MLT1A1 LTR MaLR 4 365 0 187 336 92 0 chr13 18372939 18373058 -101371840 - L2 LINE L2 0 3272 3143 944 223 119 86 chr13 18373876 18374329 -101370569 + MLT1J LTR MaLR 25 492 -19 267 107 125 0 chr13 18374525 18374581 -101370317 - Alu SINE Alu 0 300 238 418 288 69 2 chr13 18375373 18375591 -101369307 + L1ME LINE L1 1379 1680 -5323 307 361 0 0 chr13 18375641 18375774 -101369124 + LTR16B LTR ERVL 1 133 -331 1793 276 53 19 chr13 18375781 18377061 -101367837 + L1ME LINE L1 2295 3638 -3319 1993 157 3 10 chr13 18377066 18377379 -101367519 - AluSx SINE Alu -1 311 1 23 0 0 0 chr13 18377463 18377486 -101367412 + AT_rich Low_complexity Low_complexity 1 23 0 276 287 0 0 chr13 18378105 18378262 -101366636 + (CA)n Simple_repeat Simple_repeat 1 157 0 501 329 2 8 chr13 18378291 18378794 -101366104 + (CA)n Simple_repeat Simple_repeat 1 499 0 2049 224 18 2 chr13 18380433 18380885 -101364013 + L1MB7 LINE L1 5726 6184 0 540 268 47 54 chr13 18381711 18382096 -101362802 + L2 LINE L2 1707 2172 -1142 860 274 77 24 chr13 18382393 18382839 -101362059 + L1MEc LINE L1 895 1389 -4921 2264 108 7 0 chr13 18382839 18383145 -101361753 + AluSq SINE Alu 1 308 -5 860 274 77 24 chr13 18383145 18383319 -101361579 + L1MEc LINE L1 1389 1552 -4758 851 271 65 63 chr13 18383322 18383750 -101361148 + L2 LINE L2 2282 2710 -604 799 279 217 9 chr13 18383851 18384334 -101360564 + L2 LINE L2 2687 3309 -4 197 224 15 104 chr13 18384861 18384928 -101359970 - L2 LINE L2 -9 3304 3244 286 358 83 8 chr13 18384934 18385054 -101359844 - MER5A DNA MER1_type 0 189 61 419 52 17 0 chr13 18385370 18385428 -101359470 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1264 214 43 23 chr13 18385433 18385732 -101359166 - L1MC2 LINE L1 -56 6288 5984 1583 157 39 39 chr13 18386103 18386409 -101358489 + AluJo SINE Alu 1 306 -6 2528 199 42 7 chr13 18388034 18388384 -101356514 - L1MB7 LINE L1 0 6184 5807 2000 120 14 7 chr13 18388384 18388676 -101356222 - AluSx SINE Alu -14 298 5 2528 199 42 7 chr13 18388676 18388872 -101356026 - L1MB7 LINE L1 -377 5807 5619 2713 152 24 35 chr13 18389254 18389747 -101355151 + LTR45B LTR ERV1 2 489 0 274 221 191 0 chr13 18389952 18390020 -101354878 - L2 LINE L2 -26 3287 3207 350 250 68 57 chr13 18390970 18391073 -101353825 - MER5B DNA MER1_type 0 178 71 1945 138 6 6 chr13 18391073 18391384 -101353514 - AluY SINE Alu 0 311 1 350 250 68 57 chr13 18391384 18391456 -101353442 - MER5B DNA MER1_type -107 71 1 208 287 0 0 chr13 18392108 18392216 -101352682 + (GGGTG)n Simple_repeat Simple_repeat 4 111 0 387 0 0 0 chr13 18394507 18394550 -101350348 + (TG)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr13 18394550 18394579 -101350319 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1361 150 0 5 chr13 18394605 18394818 -101350080 + AluSq SINE Alu 1 212 -101 444 50 0 17 chr13 18394818 18394878 -101350020 + AluSq/x SINE Alu 78 136 -177 2116 114 0 3 chr13 18394879 18395176 -101349722 + AluSx SINE Alu 3 298 -14 2147 116 10 0 chr13 18395912 18396222 -101348676 + AluSp SINE Alu 1 313 0 2016 111 19 32 chr13 18396272 18396588 -101348310 + AluSx SINE Alu 1 312 0 27 29 0 0 chr13 18396631 18396665 -101348233 + AT_rich Low_complexity Low_complexity 1 34 0 1990 171 42 46 chr13 18396685 18397117 -101347781 - MSTB1 LTR MaLR -2 430 1 207 0 0 0 chr13 18397642 18397665 -101347233 + (T)n Simple_repeat Simple_repeat 1 23 0 459 189 68 8 chr13 18398248 18398380 -101346518 + L1ME2 LINE L1 5182 5321 -825 475 183 0 0 chr13 18398390 18398472 -101346426 + FLAM_A SINE Alu 42 123 -19 731 210 81 5 chr13 18398505 18398691 -101346207 + L1ME2 LINE L1 5328 5527 -637 1080 195 4 22 chr13 18398691 18398917 -101345981 - AluJo SINE Alu -18 294 73 2171 221 56 43 chr13 18398922 18399532 -101345366 + L1ME2 LINE L1 5535 6152 -12 1090 168 13 35 chr13 18399877 18400109 -101344789 + AluJo SINE Alu 86 312 0 334 286 108 14 chr13 18400865 18401078 -101343820 + L1ME2 LINE L1 5576 5808 -313 188 238 24 0 chr13 18401080 18401122 -101343776 + L2 LINE L2 2348 2390 -924 482 272 209 10 chr13 18401132 18401338 -101343560 + MIR SINE MIR 2 248 -14 1638 177 112 58 chr13 18401338 18401767 -101343131 - LTR47A LTR ERVL 0 452 1 625 258 8 0 chr13 18401781 18401913 -101342985 - MER5B DNA MER1_type -11 167 35 419 315 89 40 chr13 18401916 18402344 -101342554 + L1ME LINE L1 141 589 -5616 1546 260 92 83 chr13 18402547 18402856 -101342042 + L1ME LINE L1 663 968 -5428 2201 88 0 0 chr13 18402856 18403140 -101341758 + AluSx SINE Alu 1 284 -28 1546 260 92 83 chr13 18403140 18404297 -101340601 + L1ME LINE L1 968 2147 -4249 2225 129 51 58 chr13 18404297 18404745 -101340153 + MER65A LTR ERV1 1 445 0 1546 260 92 83 chr13 18404745 18404876 -101340022 + L1ME LINE L1 2147 2275 -4121 530 290 94 34 chr13 18404874 18405202 -101339696 + L1ME LINE L1 37 384 -6012 * 1826 174 0 0 chr13 18405435 18405745 -101339153 + AluJb SINE Alu 1 310 -2 2039 257 26 22 chr13 18405752 18406473 -101338425 + L1ME LINE L1 3134 3857 -2358 986 187 5 0 chr13 18406482 18406669 -101338229 + L1ME LINE L1 3973 4160 -2055 604 214 13 120 chr13 18406651 18406968 -101337930 + L1ME2 LINE L1 5881 6163 -1 * 359 314 111 59 chr13 18407099 18407899 -101336999 + L2 LINE L2 2437 3271 -1 21 0 0 0 chr13 18408519 18408540 -101336358 + AT_rich Low_complexity Low_complexity 1 21 0 302 236 39 94 chr13 18408567 18408770 -101336128 + L1ME4a LINE L1 5929 6120 -1 266 319 90 21 chr13 18409242 18409386 -101335512 + MIR SINE MIR 92 245 -17 361 311 57 36 chr13 18409449 18409642 -101335256 - MIR SINE MIR -1 261 65 1241 223 72 50 chr13 18409649 18410106 -101334792 + MLT1C LTR MaLR 1 467 0 185 252 185 50 chr13 18411237 18411356 -101333542 + MIR SINE MIR 128 262 0 2227 107 0 0 chr13 18411533 18411833 -101333065 + AluSq SINE Alu 1 300 -13 240 143 0 0 chr13 18412303 18412345 -101332553 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 277 235 37 25 chr13 18412946 18413027 -101331871 + L1MC5 LINE L1 7844 7925 -36 2459 44 0 7 chr13 18413234 18413531 -101331367 - AluY SINE Alu -16 295 1 567 276 113 22 chr13 18413561 18413836 -101331062 - L1M4 LINE L1 -920 5226 4927 954 179 0 36 chr13 18414020 18414216 -101330682 - AluJb SINE Alu -5 307 119 1840 284 113 30 chr13 18414285 18415466 -101329432 - L1M4 LINE L1 -1559 4587 3309 859 207 35 83 chr13 18415505 18415843 -101329055 - L1MC5 LINE L1 -726 7235 6914 1363 123 107 35 chr13 18415863 18415925 -101328973 - L1PA16 LINE L1 -9 6157 6101 2480 104 19 19 chr13 18415925 18416289 -101328609 + THE1B LTR MaLR 1 364 0 1363 123 107 35 chr13 18416289 18416487 -101328411 - L1PA16 LINE L1 -65 6101 5878 281 314 119 8 chr13 18416736 18416854 -101328044 - L2 LINE L2 -5 3267 3137 223 233 33 17 chr13 18417916 18417976 -101326922 + CT-rich Low_complexity Low_complexity 1 61 0 724 100 40 0 chr13 18418068 18418168 -101326730 - LTR12 LTR ERV1 0 714 611 295 177 70 32 chr13 18418173 18418254 -101326644 - LTR30 LTR ERV1 -75 624 479 1401 106 0 121 chr13 18418254 18418480 -101326418 - LTR12 LTR ERV1 -429 285 94 2268 68 10 0 chr13 18418480 18418773 -101326125 - AluY SINE Alu -15 296 1 1401 106 0 121 chr13 18418773 18418811 -101326087 - LTR12 LTR ERV1 -620 94 53 226 269 0 0 chr13 18418811 18418863 -101326035 - LTR30 LTR ERV1 -670 52 1 448 204 11 0 chr13 18419100 18419188 -101325710 + MER3 DNA MER1_type 1 89 -120 323 295 151 43 chr13 18419218 18419699 -101325199 - L2 LINE L2 -65 3248 2640 391 198 5 43 chr13 18420399 18420586 -101324312 + GA-rich Low_complexity Low_complexity 1 180 0 448 206 15 45 chr13 18420594 18420931 -101323967 + G-rich Low_complexity Low_complexity 1 326 0 326 138 47 39 chr13 18421691 18422116 -101322782 + (CA)n Simple_repeat Simple_repeat 1 428 0 451 184 226 16 chr13 18422285 18422475 -101322423 + MLT1B LTR MaLR 28 257 -133 213 221 95 21 chr13 18422911 18423006 -101321892 - MIR SINE MIR -132 130 29 263 233 0 0 chr13 18423561 18423621 -101321277 + L2 LINE L2 2471 2530 -784 1099 219 39 48 chr13 18423729 18424039 -101320859 + MER58B DNA MER1_type 35 341 0 336 249 230 9 chr13 18424040 18424257 -101320641 + L2 LINE L2 2673 2937 -377 786 205 0 6 chr13 18424497 18424843 -101320055 + (TGG)n Simple_repeat Simple_repeat 1 343 0 343 272 163 14 chr13 18425144 18425291 -101319607 - L1ME4a LINE L1 -7 6114 5946 2171 72 17 10 chr13 18425408 18425698 -101319200 + AluY SINE Alu 1 292 -19 2107 113 23 10 chr13 18426648 18426957 -101317941 - AluSq SINE Alu 0 313 1 223 306 0 0 chr13 18426957 18427019 -101317879 - L2 LINE L2 -10 3303 3242 916 283 76 54 chr13 18427553 18428443 -101316455 + L2 LINE L2 2383 3309 -4 1202 260 68 14 chr13 18428853 18429222 -101315676 + L1MD3 LINE L1 7413 7801 -194 2143 124 3 0 chr13 18430963 18431269 -101313629 - AluSx SINE Alu -5 307 1 22 0 0 0 chr13 18431849 18431871 -101313027 + AT_rich Low_complexity Low_complexity 1 22 0 2024 101 0 4 chr13 18432305 18432581 -101312317 - AluSx SINE Alu -24 288 14 433 251 62 72 chr13 18433199 18433393 -101311505 + L1MEd LINE L1 734 928 -5191 200 59 29 0 chr13 18433671 18433705 -101311193 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2002 122 0 0 chr13 18433709 18433988 -101310910 - AluSx SINE Alu -33 279 1 2163 255 84 36 chr13 18435007 18436464 -101308434 + L1MCc LINE L1 817 2619 -4503 2011 113 0 0 chr13 18436464 18436738 -101308160 + AluSx SINE Alu 3 276 -36 2163 255 84 36 chr13 18436738 18437161 -101307737 + L1MCc LINE L1 2619 3020 -4102 * 2329 201 24 6 chr13 18437160 18437668 -101307230 + L1 LINE L1 4122 4638 -1508 202 208 21 21 chr13 18438528 18438576 -101306322 + L2 LINE L2 3225 3272 0 228 250 98 27 chr13 18438876 18438988 -101305910 + MER103 DNA DNA 46 165 -1 2156 104 0 3 chr13 18440489 18440787 -101304111 + AluSx SINE Alu 1 297 -15 648 26 0 0 chr13 18444110 18444188 -101300710 - L1PA5 LINE L1 -1819 4327 4250 * 5112 121 0 1 chr13 18444187 18444961 -101299937 + L1PA5 LINE L1 4327 5099 -1047 5571 53 1 0 chr13 18444961 18445634 -101299264 + L1PA5 LINE L1 5479 6154 0 770 267 86 0 chr13 18445779 18446011 -101298887 - MIR SINE MIR -3 259 8 269 272 114 88 chr13 18447089 18447361 -101297537 - L3 LINE CR1 -2 1575 1297 309 309 12 12 chr13 18447379 18447463 -101297435 - L3 LINE CR1 -427 1150 1067 259 252 71 31 chr13 18447502 18447629 -101297269 - L1ME4a LINE L1 -21 6100 5969 1523 152 107 9 chr13 18448591 18448919 -101295979 - MER46B DNA MER2_type 0 236 2 2035 102 3 3 chr13 18448980 18449295 -101295603 + AluSx SINE Alu 1 315 0 207 0 0 0 chr13 18449294 18449317 -101295581 + (CA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr13 18449343 18449365 -101295533 + (TG)n Simple_repeat Simple_repeat 1 22 0 319 263 21 0 chr13 18451175 18451270 -101293628 - L1ME4a LINE L1 -628 5534 5438 1392 187 75 69 chr13 18452971 18453346 -101291552 - MLT2C1 LTR ERVL 0 397 21 2062 107 7 0 chr13 18454377 18454678 -101290220 - AluSp SINE Alu 0 305 3 802 109 109 0 chr13 18454682 18454801 -101290097 - AluSp SINE Alu -181 132 1 441 0 0 0 chr13 18455790 18455839 -101289059 + (TG)n Simple_repeat Simple_repeat 2 50 0 2109 92 7 0 chr13 18455839 18456121 -101288777 - AluY SINE Alu -27 284 1 258 32 0 0 chr13 18456871 18456902 -101287996 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2029 130 0 3 chr13 18457165 18457465 -101287433 + AluSx SINE Alu 1 299 -13 4850 155 35 9 chr13 18457902 18458772 -101286126 - L1 LINE L1 -1521 4625 3734 2216 106 0 0 chr13 18458856 18459157 -101285741 - AluSg SINE Alu -9 301 1 22 0 0 0 chr13 18461363 18461385 -101283513 + AT_rich Low_complexity Low_complexity 1 22 0 670 167 9 0 chr13 18461387 18461495 -101283403 - FLAM_A SINE Alu -33 109 1 236 185 31 15 chr13 18461657 18461722 -101283176 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 1835 238 23 34 chr13 18462773 18463263 -101281635 + L1M4 LINE L1 3160 3643 -2503 1345 147 54 0 chr13 18463263 18463487 -101281411 + MER46A DNA MER2_type 1 236 0 1835 238 23 34 chr13 18463487 18463613 -101281285 + L1M4 LINE L1 3643 3769 -2377 257 128 21 0 chr13 18467128 18467175 -101277723 + GA-rich Low_complexity Low_complexity 3 50 0 1807 163 7 0 chr13 18467823 18468112 -101276786 + AluJo SINE Alu 1 291 -21 511 90 13 8 chr13 18468718 18468803 -101276095 + LTR12 LTR ERV1 159 1983 -455 226 111 0 48 chr13 18468911 18468974 -101275924 + (CCCCCA)n Simple_repeat Simple_repeat 5 64 0 226 241 46 35 chr13 18468984 18469071 -101275827 + LTR30 LTR ERV1 556 643 -79 373 147 147 11 chr13 18469073 18469168 -101275730 + LTR12 LTR ERV1 379 486 -228 923 191 43 22 chr13 18469349 18469579 -101275319 + L1MB3 LINE L1 5943 6177 -6 687 216 66 12 chr13 18471353 18471520 -101273378 + FRAM SINE Alu 1 176 0 2165 50 0 0 chr13 18471648 18471909 -101272989 - AluY SINE Alu -14 297 37 196 331 55 24 chr13 18472892 18473019 -101271879 + L2 LINE L2 2869 2999 -273 248 193 70 0 chr13 18473405 18473462 -101271436 + MER5A DNA MER1_type 88 148 -41 426 189 53 0 chr13 18473716 18473811 -101271087 + L1MB8 LINE L1 6078 6177 -1 240 35 0 0 chr13 18473853 18473882 -101271016 + (A)n Simple_repeat Simple_repeat 1 29 0 1472 232 53 48 chr13 18474195 18474718 -101270180 + MER39 LTR ERV1 1 707 0 672 242 21 16 chr13 18475527 18475713 -101269185 + MER5A DNA MER1_type 2 188 -1 2066 134 3 0 chr13 18477724 18478030 -101266868 - AluSx SINE Alu -5 307 1 25 0 0 0 chr13 18478450 18478475 -101266423 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 18478611 18478633 -101266265 + AT_rich Low_complexity Low_complexity 1 22 0 2073 107 0 7 chr13 18479067 18479357 -101265541 - AluSx SINE Alu -24 288 1 1675 136 113 3 chr13 18479359 18479660 -101265238 - L1MB2 LINE L1 -34 6137 5804 185 0 0 39 chr13 18479796 18479822 -101265076 + (TTA)n Simple_repeat Simple_repeat 2 26 0 259 258 148 16 chr13 18479916 18479943 -101264955 - L1MA10 LINE L1 -2 6332 6306 2044 174 55 5 chr13 18479943 18480406 -101264492 - L1MB8 LINE L1 -34 6137 5621 813 146 29 23 chr13 18480419 18480590 -101264308 - L1MC3 LINE L1 -3 7782 7611 743 193 0 15 chr13 18481119 18481254 -101263644 - FLAM_A SINE Alu 0 133 1 1947 141 0 3 chr13 18481430 18481734 -101263164 - AluSx SINE Alu -8 304 2 322 269 98 41 chr13 18482282 18482483 -101262415 - MLT1L LTR MaLR -2 610 371 2311 93 0 3 chr13 18483455 18483767 -101261131 + AluSq SINE Alu 1 311 -2 1994 82 20 97 chr13 18484119 18484461 -101260437 + AluYb8 SINE Alu 1 316 -2 400 235 12 0 chr13 18484536 18484617 -101260281 + MER2 DNA MER2_type 1 82 -263 339 164 0 0 chr13 18484617 18484678 -101260220 + CT-rich Low_complexity Low_complexity 3 63 0 2020 126 0 23 chr13 18484680 18484989 -101259909 - AluSq SINE Alu -11 302 1 1443 133 71 16 chr13 18484989 18485244 -101259654 + MER2 DNA MER2_type 71 339 -6 415 218 73 18 chr13 18485261 18485371 -101259527 - MIR SINE MIR -25 237 122 253 238 16 0 chr13 18485958 18486021 -101258877 - Charlie8 DNA MER1_type -2016 401 338 252 286 20 10 chr13 18486116 18486214 -101258684 - Charlie8 DNA MER1_type -2235 182 84 453 245 10 29 chr13 18488201 18488303 -101256595 - L2 LINE L2 0 3313 3214 301 299 0 21 chr13 18488349 18488446 -101256452 + MIR SINE MIR 143 237 -25 1175 115 6 0 chr13 18489033 18489207 -101255691 + AluSg/x SINE Alu 132 306 -6 1537 156 3 65 chr13 18489570 18489708 -101255190 + AluJo SINE Alu 1 111 -201 2366 45 0 0 chr13 18489708 18489994 -101254904 + AluY SINE Alu 1 286 -25 1537 156 3 65 chr13 18489994 18490162 -101254736 + AluJo SINE Alu 111 288 -24 210 316 42 32 chr13 18490171 18490266 -101254632 - L2 LINE L2 -4 3309 3214 272 364 0 17 chr13 18490312 18490430 -101254468 + MIR SINE MIR 143 258 -4 309 278 62 62 chr13 18490488 18490715 -101254183 + L1MCa LINE L1 1864 2090 -4336 208 158 0 53 chr13 18490736 18490793 -101254105 + (TTATA)n Simple_repeat Simple_repeat 1 54 0 1750 171 0 13 chr13 18491270 18491585 -101253313 - AluJb SINE Alu -1 311 1 1650 75 7 121 chr13 18491589 18491894 -101253004 - AluSc SINE Alu -39 270 1 320 286 76 70 chr13 18492103 18492515 -101252383 + L1ME3A LINE L1 5524 6010 -111 21 36 0 0 chr13 18492565 18492593 -101252305 + AT_rich Low_complexity Low_complexity 1 28 0 1908 120 28 10 chr13 18492913 18493204 -101251694 + AluSq SINE Alu 1 296 -17 1012 272 83 17 chr13 18494052 18494401 -101250497 + L1ME1 LINE L1 5790 6161 -5 2143 120 0 0 chr13 18494437 18494738 -101250160 + AluSq SINE Alu 1 301 -12 225 94 0 0 chr13 18495548 18495580 -101249318 + (TG)n Simple_repeat Simple_repeat 1 32 0 1969 193 51 14 chr13 18495693 18496128 -101248770 + L1MA4 LINE L1 5838 6288 -12 816 89 0 0 chr13 18496132 18496244 -101248654 - AluY SINE Alu -6 305 194 1862 152 0 9 chr13 18496334 18496649 -101248249 - AluJb SINE Alu 0 312 1 1996 89 4 0 chr13 18496653 18496924 -101247974 - AluY SINE Alu -39 272 1 21 0 0 0 chr13 18496934 18496955 -101247943 + AT_rich Low_complexity Low_complexity 1 21 0 1360 120 0 0 chr13 18497258 18497449 -101247449 + AluSq SINE Alu 61 251 -62 1055 132 0 6 chr13 18497821 18498004 -101246894 - AluSg/x SINE Alu 0 303 122 185 273 156 0 chr13 18498440 18498517 -101246381 + MIR SINE MIR 124 212 -50 * 190 222 19 56 chr13 18498510 18498564 -101246334 - L2 LINE L2 -27 3245 3194 203 195 91 13 chr13 18499316 18499393 -101245505 + (CATCC)n Simple_repeat Simple_repeat 3 85 0 362 293 9 0 chr13 18500227 18500404 -101244494 + L1ME4a LINE L1 5256 5436 -806 330 222 89 22 chr13 18500504 18500594 -101244304 + L1ME3A LINE L1 6065 6160 -10 2552 48 0 0 chr13 18500632 18500943 -101243955 + AluY SINE Alu 1 311 0 443 260 54 99 chr13 18500954 18501398 -101243500 + L1ME4a LINE L1 5440 5869 -252 4204 109 15 28 chr13 18501592 18502198 -101242700 - L1PA15 LINE L1 0 6165 5566 2375 42 0 3 chr13 18502198 18502486 -101242412 - AluY SINE Alu -7 304 18 4204 109 15 28 chr13 18502486 18502533 -101242365 - L1PA15 LINE L1 -599 5566 5520 1267 157 39 11 chr13 18502727 18503007 -101241891 + MER33 DNA MER1_type 29 316 -8 359 219 61 0 chr13 18503271 18503353 -101241545 - HsTC2 DNA Tc2 -1811 87 1 406 333 76 19 chr13 18503483 18503693 -101241205 + MIR SINE MIR 17 238 -24 360 161 192 77 chr13 18504083 18504253 -101240645 - LTR50 LTR ERVL 0 795 586 230 200 17 17 chr13 18504516 18504576 -101240322 - LTR50 LTR ERVL -731 64 5 198 0 0 0 chr13 18504778 18504800 -101240098 + (TG)n Simple_repeat Simple_repeat 2 23 0 377 183 0 0 chr13 18504931 18505002 -101239896 + T-rich Low_complexity Low_complexity 1 71 0 346 295 28 10 chr13 18505005 18505301 -101239597 + CT-rich Low_complexity Low_complexity 1 301 0 970 104 7 0 chr13 18505515 18505650 -101239248 - AluSq/x SINE Alu -176 136 1 1221 228 48 95 chr13 18505661 18505822 -101239076 - L1MA9 LINE L1 -45 6267 6100 1576 171 3 53 chr13 18505822 18506143 -101238755 + AluJb SINE Alu 1 305 -7 1221 228 48 95 chr13 18506143 18506499 -101238399 - L1MA9 LINE L1 -212 6100 5774 2943 213 134 49 chr13 18506505 18507534 -101237364 + L1M4 LINE L1 4025 5171 -975 1624 195 13 3 chr13 18507534 18507841 -101237057 + AluJo SINE Alu 1 310 -2 2943 213 134 49 chr13 18507841 18508004 -101236894 + L1M4 LINE L1 5171 5319 -827 1771 84 0 0 chr13 18508004 18508231 -101236667 + AluSc SINE Alu 39 265 -44 417 227 191 43 chr13 18508326 18508604 -101236294 + LTR50 LTR ERVL 460 778 -17 567 194 15 37 chr13 18509015 18509149 -101235749 + FLAM_C SINE Alu 1 131 -2 1242 121 56 39 chr13 18509166 18509397 -101235501 - LTR12 LTR ERV1 0 714 480 265 303 10 0 chr13 18509397 18509496 -101235402 - LTR30 LTR ERV1 -79 643 544 1416 73 232 0 chr13 18509501 18509721 -101235177 - LTR12 LTR ERV1 -442 272 2 933 75 82 0 chr13 18509721 18509855 -101235043 + AluYa5 SINE Alu 145 289 -22 324 0 0 0 chr13 18509859 18509895 -101235003 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 521 310 81 44 chr13 18510164 18510469 -101234429 + L1MC4 LINE L1 6293 6585 -1307 2337 66 3 0 chr13 18510469 18510771 -101234127 + AluY SINE Alu 1 303 -8 1552 174 0 57 chr13 18510772 18510909 -101233989 + AluJo SINE Alu 1 144 -168 1909 138 14 0 chr13 18510909 18511205 -101233693 + AluSp SINE Alu 1 300 -13 1552 174 0 57 chr13 18511205 18511384 -101233514 + AluJo SINE Alu 144 299 -13 521 310 81 44 chr13 18511384 18511638 -101233260 + L1MC4 LINE L1 6584 6961 -931 1989 90 41 14 chr13 18512060 18512350 -101232548 - AluSp SINE Alu -14 299 2 2054 82 11 11 chr13 18512364 18512664 -101232234 - AluY SINE Alu 0 300 1 219 286 14 14 chr13 18513015 18513085 -101231813 - MIR SINE MIR -122 140 71 1766 140 7 29 chr13 18513123 18513431 -101231467 + AluJo SINE Alu 3 303 -9 279 326 20 31 chr13 18513527 18513625 -101231273 - L2 LINE L2 -27 3245 3149 1505 151 0 0 chr13 18513663 18513901 -101230997 + AluSx SINE Alu 64 301 -11 4741 123 48 15 chr13 18513901 18514558 -101230340 - L1MC1 LINE L1 -207 6126 5439 2198 94 7 7 chr13 18514558 18514867 -101230031 - AluSx SINE Alu -3 309 1 4741 123 48 15 chr13 18514867 18514959 -101229939 - L1MC1 LINE L1 -894 5439 5352 216 0 0 0 chr13 18515238 18515262 -101229636 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1899 118 23 33 chr13 18515299 18515604 -101229294 - AluSq SINE Alu -11 302 1 2264 65 16 26 chr13 18515638 18515948 -101228950 - AluY SINE Alu -4 307 1 1485 185 38 3 chr13 18516262 18516554 -101228344 - AluSg SINE Alu -8 302 1 2382 77 0 6 chr13 18516564 18516876 -101228022 - AluY SINE Alu -1 310 1 295 116 0 0 chr13 18516922 18516965 -101227933 - LTR50 LTR ERVL -752 43 1 1466 183 69 25 chr13 18517059 18517307 -101227591 - MER58B DNA MER1_type -2080 340 74 2372 139 31 0 chr13 18517307 18517659 -101227239 - THE1B LTR MaLR -1 363 1 1466 183 69 25 chr13 18517659 18517727 -101227171 - MER58B DNA MER1_type -2346 74 10 2043 93 3 33 chr13 18518188 18518282 -101226616 + AluSp SINE Alu 1 96 -217 3098 112 37 19 chr13 18518282 18518766 -101226132 + LTR15 LTR ERV1 1 493 0 2043 93 3 33 chr13 18518766 18518973 -101225925 + AluSp SINE Alu 96 293 -20 21 57 0 0 chr13 18519049 18519084 -101225814 + AT_rich Low_complexity Low_complexity 1 35 0 1598 195 16 0 chr13 18520002 18520309 -101224589 - AluJo SINE Alu 0 312 1 614 275 23 94 chr13 18520704 18520760 -101224138 - L2 LINE L2 -4 3309 3251 1025 157 23 56 chr13 18520760 18520906 -101223992 + MER3 DNA MER1_type 1 139 -70 2191 87 0 0 chr13 18520906 18521194 -101223704 + AluSc SINE Alu 1 288 -21 1025 157 23 56 chr13 18521194 18521263 -101223635 + MER3 DNA MER1_type 139 209 0 614 275 23 94 chr13 18521263 18521515 -101223383 - L2 LINE L2 -62 3251 3023 571 289 67 53 chr13 18522154 18522229 -101222669 + MIR SINE MIR 14 87 -175 1969 136 10 3 chr13 18522229 18522539 -101222359 - AluSx SINE Alu 0 312 1 571 289 67 53 chr13 18522539 18522688 -101222210 + MIR SINE MIR 87 241 -21 1477 166 19 63 chr13 18523197 18523516 -101221382 + AluJo SINE Alu 1 305 -7 246 208 0 0 chr13 18523516 18523569 -101221329 + GA-rich Low_complexity Low_complexity 1 53 0 1868 153 0 7 chr13 18523990 18524298 -101220600 - AluSq SINE Alu -7 306 1 309 253 11 35 chr13 18524942 18525029 -101219869 - MIR SINE MIR -3 259 175 1017 113 0 13 chr13 18525729 18525888 -101219010 + AluSg/x SINE Alu 154 310 0 1973 121 7 3 chr13 18525908 18526197 -101218701 + AluSx SINE Alu 12 301 -11 290 180 0 20 chr13 18527201 18527251 -101217647 + tRNA-Arg-AGG tRNA tRNA 2 50 -26 4239 134 51 25 chr13 18527635 18528186 -101216712 + L1MB3 LINE L1 5393 5971 -212 2013 117 0 3 chr13 18528186 18528476 -101216422 + AluSx SINE Alu 1 289 -23 4239 134 51 25 chr13 18528476 18528692 -101216206 + L1MB3 LINE L1 5971 6180 -3 516 229 18 0 chr13 18528831 18528940 -101215958 + MER45 DNA AcHobo 1 111 -929 1873 130 3 17 chr13 18528942 18529284 -101215614 - AluJb SINE Alu 0 312 1 496 232 155 32 chr13 18529732 18529887 -101215011 - L1MEd LINE L1 -5511 608 435 1994 135 0 0 chr13 18530292 18530595 -101214303 + AluSx SINE Alu 1 303 -9 2911 187 27 19 chr13 18532422 18532753 -101212145 + L1MB2 LINE L1 5511 5851 -320 1761 114 0 11 chr13 18532753 18533015 -101211883 - AluSx SINE Alu -53 259 1 2911 187 27 19 chr13 18533015 18533310 -101211588 + L1MB2 LINE L1 5851 6142 -29 240 256 24 49 chr13 18533459 18533541 -101211357 + HAL1 LINE L1 27 106 -2401 808 129 0 25 chr13 18533544 18533776 -101211122 + AluJb SINE Alu 2 299 -13 226 301 7 35 chr13 18534168 18534311 -101210587 + (CA)n Simple_repeat Simple_repeat 1 139 0 2411 176 9 12 chr13 18535003 18535424 -101209474 + LOR1b LTR ERV1 42 461 0 247 208 181 0 chr13 18535425 18535497 -101209401 - MIR SINE MIR -86 176 92 2427 61 0 10 chr13 18536559 18536853 -101208045 + AluY SINE Alu 1 291 -20 2129 101 0 11 chr13 18538482 18538769 -101206129 - AluSx SINE Alu -2 310 27 2158 133 0 3 chr13 18539263 18539572 -101205326 + AluSx SINE Alu 1 308 -4 1140 263 185 2 chr13 18540848 18541410 -101203488 - L2 LINE L2 -826 2488 1824 326 169 31 0 chr13 18541410 18541475 -101203423 + L1MC5 LINE L1 7327 7393 -568 818 139 0 0 chr13 18541479 18541594 -101203304 + FLAM_C SINE Alu 1 115 -28 210 71 0 0 chr13 18541595 18541623 -101203275 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 1346 199 56 91 chr13 18541624 18542162 -101202736 + L1MC5 LINE L1 7395 7913 -48 294 253 148 50 chr13 18542174 18542376 -101202522 - L2 LINE L2 -1478 1836 1615 2426 71 7 0 chr13 18542822 18543192 -101201706 + AluY SINE Alu 1 372 0 2100 129 0 7 chr13 18544066 18544361 -101200537 + AluSx SINE Alu 1 293 -19 2473 134 37 32 chr13 18545086 18545495 -101199403 - MSTB1 LTR MaLR -14 418 8 193 242 176 11 chr13 18545912 18546003 -101198895 - MIR3 SINE MIR -92 116 11 1694 129 0 0 chr13 18546858 18547082 -101197816 - AluSg/x SINE Alu -17 293 70 376 243 97 14 chr13 18547445 18547589 -101197309 - L1ME LINE L1 -592 5574 5419 363 86 17 17 chr13 18548215 18548273 -101196625 - FRAM SINE Alu -69 97 40 2146 128 3 6 chr13 18548278 18548591 -101196307 - AluSx SINE Alu 0 312 1 1849 237 61 19 chr13 18548592 18549166 -101195732 - L1ME LINE L1 -1040 5106 4509 5472 213 71 68 chr13 18549453 18550064 -101194834 - L1ME LINE L1 -1605 4541 3933 2438 66 0 10 chr13 18550064 18550367 -101194531 + AluY SINE Alu 1 300 -11 5472 213 71 68 chr13 18550367 18551794 -101193104 - L1ME LINE L1 -2213 3933 2497 22 103 0 0 chr13 18551794 18551872 -101193026 + AT_rich Low_complexity Low_complexity 1 78 0 401 215 21 0 chr13 18551901 18551994 -101192904 - L1MC1 LINE L1 -17 6316 6222 2221 145 43 0 chr13 18553291 18553683 -101191215 + L1MA4A LINE L1 5884 6292 -11 608 269 22 97 chr13 18553993 18554261 -101190637 - MIR SINE MIR -7 255 8 1628 172 109 32 chr13 18554357 18554759 -101190139 + L1MC3 LINE L1 6701 7133 -652 1973 98 0 0 chr13 18554859 18555105 -101189793 - AluSx SINE Alu -64 248 3 1189 156 161 8 chr13 18555868 18556111 -101188787 + AluJb SINE Alu 1 280 -32 257 263 0 66 chr13 18556121 18556197 -101188701 + (TG)n Simple_repeat Simple_repeat 2 72 0 2431 65 3 0 chr13 18556274 18556567 -101188331 - AluSp SINE Alu -19 294 1 287 258 151 0 chr13 18557157 18557250 -101187648 + MIR SINE MIR 48 154 -108 254 186 139 23 chr13 18558535 18558621 -101186277 + L1ME LINE L1 5373 5468 -2340 1136 143 25 20 chr13 18558954 18559157 -101185741 + AluJo SINE Alu 17 220 -92 330 87 0 0 chr13 18559200 18559246 -101185652 + (TG)n Simple_repeat Simple_repeat 2 47 0 943 145 76 47 chr13 18559309 18559481 -101185417 + AluJo SINE Alu 120 296 -16 2405 68 31 0 chr13 18559483 18559777 -101185121 + AluY SINE Alu 1 303 -8 582 250 118 20 chr13 18559804 18560008 -101184890 + LTR40a LTR ERVL 296 519 0 350 284 80 0 chr13 18560012 18560187 -101184711 + L1ME LINE L1 5591 5738 -383 1469 282 87 25 chr13 18560202 18560883 -101184015 + L1MEc LINE L1 40 762 -5634 1601 191 13 19 chr13 18560942 18561257 -101183641 + MLT1A1 LTR MaLR 51 363 -2 1581 182 62 46 chr13 18561257 18561684 -101183214 + L1M4 LINE L1 4865 5303 -843 2210 112 7 0 chr13 18561684 18561979 -101182919 - AluSq SINE Alu -16 297 1 1581 182 62 46 chr13 18561979 18562052 -101182846 + L1M4 LINE L1 5303 5373 -773 4648 144 28 35 chr13 18562355 18562842 -101182056 + L1MB2 LINE L1 5286 5775 -396 2027 122 43 45 chr13 18562842 18563066 -101181832 + THE1C LTR MaLR 1 225 -150 2209 118 3 7 chr13 18563066 18563372 -101181526 + AluSq SINE Alu 1 305 -8 2027 122 43 45 chr13 18563372 18563523 -101181375 + THE1C LTR MaLR 225 375 0 4648 144 28 35 chr13 18563523 18563876 -101181022 + L1MB2 LINE L1 5775 6122 -49 2149 146 0 0 chr13 18563876 18564184 -101180714 + AluSx SINE Alu 1 308 -4 4648 144 28 35 chr13 18564184 18564225 -101180673 + L1MB2 LINE L1 6122 6162 -9 1290 204 168 127 chr13 18564232 18564731 -101180167 + L1ME1 LINE L1 5318 5795 -371 2022 133 0 0 chr13 18564731 18565009 -101179889 + AluSx SINE Alu 1 278 -34 273 57 0 0 chr13 18565011 18565046 -101179852 + (CA)n Simple_repeat Simple_repeat 2 36 0 1290 204 168 127 chr13 18565046 18565118 -101179780 + L1ME1 LINE L1 5795 5863 -303 2475 90 0 0 chr13 18565118 18565428 -101179470 + AluY SINE Alu 2 311 0 1290 204 168 127 chr13 18565428 18565626 -101179272 + L1ME1 LINE L1 5863 6123 -43 * 1932 251 88 59 chr13 18565613 18565815 -101179083 + L1M4 LINE L1 2921 3116 -3030 2216 95 0 0 chr13 18565815 18566089 -101178809 + AluSc SINE Alu 1 274 -35 2567 157 16 40 chr13 18566091 18566595 -101178303 - LTR22B LTR ERVK 0 492 1 1932 251 88 59 chr13 18566595 18567328 -101177570 + L1M4 LINE L1 3116 3887 -2259 938 144 0 0 chr13 18567331 18567463 -101177435 + AluSc SINE Alu 1 132 -177 1668 78 0 5 chr13 18567592 18567797 -101177101 - AluY SINE Alu -107 204 1 1640 140 18 42 chr13 18567819 18568104 -101176794 + AluJo SINE Alu 13 290 -22 370 192 39 13 chr13 18568256 18568334 -101176564 - Tigger4(Zombi) DNA MER2_type 0 2731 2652 2283 96 20 0 chr13 18568336 18568628 -101176270 + AluSq SINE Alu 1 298 -15 2391 74 0 0 chr13 18568672 18568968 -101175930 + AluY SINE Alu 1 296 -15 5227 97 34 10 chr13 18568968 18569764 -101175134 + LOR1-int LTR ERV1 4707 5524 -2596 1181 104 29 0 chr13 18569763 18569936 -101174962 + LOR1-int LTR ERV1 5809 5986 -2134 * 483 273 33 11 chr13 18570056 18570239 -101174659 - AluSp SINE Alu -124 189 3 3641 88 50 47 chr13 18570244 18570868 -101174030 - LOR1-int LTR ERV1 -3407 4713 4088 348 131 40 46 chr13 18570885 18571060 -101173838 + (TG)n Simple_repeat Simple_repeat 2 175 0 231 122 55 66 chr13 18571090 18571271 -101173627 + (TG)n Simple_repeat Simple_repeat 1 179 0 914 100 27 0 chr13 18571271 18571421 -101173477 - LOR1-int LTR ERV1 -4482 3638 3485 342 156 54 18 chr13 18571434 18571601 -101173297 + (TG)n Simple_repeat Simple_repeat 2 174 0 318 162 60 12 chr13 18571615 18571782 -101173116 + (TG)n Simple_repeat Simple_repeat 1 175 0 314 112 78 9 chr13 18571843 18571959 -101172939 + (TG)n Simple_repeat Simple_repeat 2 125 0 239 306 97 15 chr13 18572236 18572370 -101172528 + L1ME LINE L1 5678 5822 -348 2278 99 0 0 chr13 18572402 18572696 -101172202 - AluY SINE Alu -17 294 1 1742 104 4 0 chr13 18572988 18573228 -101171670 + AluSx SINE Alu 1 241 -71 700 153 113 20 chr13 18573256 18573406 -101171492 + MER1B DNA MER1_type 1 164 -133 22 35 0 0 chr13 18573882 18573911 -101170987 + AT_rich Low_complexity Low_complexity 1 29 0 1722 136 0 28 chr13 18574144 18574430 -101170468 + AluSx SINE Alu 31 308 -4 30 0 0 0 chr13 18574619 18574649 -101170249 + AT_rich Low_complexity Low_complexity 1 30 0 501 135 0 0 chr13 18625709 18625783 -101119115 - AluS SINE Alu -239 74 1 720 291 51 22 chr13 18625874 18626451 -101118447 - L1MEc LINE L1 -3687 3254 2701 322 189 0 78 chr13 18626462 18626552 -101118346 - L1MEc LINE L1 -5194 1737 1655 265 279 64 17 chr13 18626554 18626726 -101118172 - L1MEc LINE L1 -4963 1460 1281 739 240 56 0 chr13 18626744 18626940 -101117958 - MER3 DNA MER1_type 0 209 3 356 292 125 14 chr13 18627550 18627717 -101117181 - MIR SINE MIR -63 145 11 926 187 155 5 chr13 18628843 18629030 -101115868 - MER58A DNA MER1_type -9 215 1 23 33 0 0 chr13 18629309 18629339 -101115559 + AT_rich Low_complexity Low_complexity 1 30 0 354 143 0 16 chr13 18629997 18630060 -101114838 - HsTC2 DNA Tc2 -13 1885 1824 284 216 40 27 chr13 18630060 18630134 -101114764 + L1ME2 LINE L1 6031 6105 -59 28 71 0 0 chr13 18630134 18630190 -101114708 + AT_rich Low_complexity Low_complexity 1 56 0 1967 156 0 0 chr13 18630702 18630990 -101113908 - AluSx SINE Alu -19 293 6 527 289 228 0 chr13 18631480 18631677 -101113221 - MIR SINE MIR 0 262 21 21 89 0 0 chr13 18631722 18631778 -101113120 + AT_rich Low_complexity Low_complexity 1 56 0 766 255 109 73 chr13 18631927 18631993 -101112905 - MLT1L LTR MaLR 0 615 553 2039 126 3 16 chr13 18631993 18632302 -101112596 + AluJo SINE Alu 1 305 -7 766 255 109 73 chr13 18632302 18632686 -101112212 - MLT1L LTR MaLR -62 553 149 1000 175 7 0 chr13 18633387 18633541 -101111357 + FAM SINE Alu 1 155 -30 2106 114 3 28 chr13 18633542 18633859 -101111039 - AluSx SINE Alu -3 309 1 1520 166 0 51 chr13 18634027 18634358 -101110540 + AluJo SINE Alu 1 316 0 827 141 0 59 chr13 18635592 18635727 -101109171 + AluJo/FLAM SINE Alu 1 127 -185 2386 61 0 7 chr13 18635730 18636023 -101108875 + AluY SINE Alu 1 291 -20 24 0 0 0 chr13 18636023 18636047 -101108851 + AT_rich Low_complexity Low_complexity 1 24 0 2694 194 51 27 chr13 18638971 18639469 -101105429 + L1MB8 LINE L1 5450 5972 -206 2215 114 0 0 chr13 18639469 18639766 -101105132 + AluSx SINE Alu 1 297 -15 2694 194 51 27 chr13 18639766 18639979 -101104919 + L1MB8 LINE L1 5972 6178 0 212 321 71 24 chr13 18640344 18640428 -101104470 + MIR3 SINE MIR 99 186 -22 1933 133 14 0 chr13 18640592 18640877 -101104021 - AluSx SINE Alu -10 302 14 2151 130 0 0 chr13 18640988 18641280 -101103618 + AluSg SINE Alu 1 292 -18 1276 90 12 0 chr13 18641623 18641789 -101103109 + AluSq SINE Alu 133 300 -13 579 199 209 71 chr13 18641803 18641999 -101102899 + MIR SINE MIR 5 227 -35 2038 137 0 10 chr13 18641999 18642298 -101102600 + AluJb SINE Alu 1 296 -16 487 224 19 19 chr13 18642298 18642405 -101102493 + AluJb SINE Alu 135 241 -71 1058 181 8 63 chr13 18642413 18642651 -101102247 + AluJo SINE Alu 85 309 -3 23 68 0 0 chr13 18642685 18642729 -101102169 + AT_rich Low_complexity Low_complexity 1 44 0 1767 184 0 3 chr13 18643057 18643359 -101101539 + AluJb SINE Alu 1 301 0 36 87 0 0 chr13 18643515 18643607 -101101291 + AT_rich Low_complexity Low_complexity 1 92 0 1772 226 34 36 chr13 18644023 18644493 -101100405 - MER21B LTR ERV1 -202 661 193 1002 223 89 81 chr13 18644496 18644979 -101099919 + L1MDa LINE L1 492 1074 -5466 2150 138 0 6 chr13 18644983 18645294 -101099604 + AluSx SINE Alu 2 310 -2 1887 145 44 7 chr13 18647858 18648155 -101096743 + AluSg SINE Alu 1 308 -2 366 339 6 28 chr13 18648345 18648567 -101096331 + G-rich Low_complexity Low_complexity 1 216 0 1966 128 40 10 chr13 18649101 18649398 -101095500 - AluSx SINE Alu -6 306 1 1085 76 0 0 chr13 18649401 18649533 -101095365 - AluY SINE Alu -179 132 1 255 287 14 77 chr13 18649567 18649710 -101095188 - MER5A DNA MER1_type -21 168 35 507 225 47 16 chr13 18649740 18649869 -101095029 + MER5B DNA MER1_type 17 149 -29 197 324 14 14 chr13 18649951 18650022 -101094876 - MER5B DNA MER1_type -87 91 21 2155 93 0 4 chr13 18650163 18650441 -101094457 - AluY SINE Alu -6 305 29 1553 251 68 38 chr13 18650741 18651758 -101093140 - L1ME3A LINE L1 -213 5957 4724 1071 193 51 77 chr13 18651759 18651876 -101093022 + MLT1A1 LTR MaLR 1 120 -245 1581 88 5 5 chr13 18651876 18652091 -101092807 - AluSc SINE Alu -8 301 87 1071 193 51 77 chr13 18652091 18652370 -101092528 + MLT1A1 LTR MaLR 120 405 40 221 0 35 0 chr13 18652370 18652399 -101092499 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1846 153 0 4 chr13 18652399 18652680 -101092218 - AluSx SINE Alu -32 280 1 1071 193 51 77 chr13 18652680 18652719 -101092179 + MLT1A1 LTR MaLR 322 360 -5 384 243 56 0 chr13 18652722 18652829 -101092069 - L1ME3A LINE L1 -1417 4729 4617 279 0 0 0 chr13 18652840 18652871 -101092027 + (A)n Simple_repeat Simple_repeat 1 31 0 2147 186 34 5 chr13 18652899 18653345 -101091553 - L1MC1 LINE L1 -9 6258 5800 892 151 73 28 chr13 18653348 18653527 -101091371 - MER46A DNA MER2_type -4 232 46 4018 204 25 16 chr13 18653538 18654787 -101090111 - L1MC1 LINE L1 -562 5705 4440 2233 75 4 7 chr13 18654787 18655088 -101089810 - AluY SINE Alu 0 300 1 4018 204 25 16 chr13 18655088 18655319 -101089579 - L1MC1 LINE L1 -1827 4440 4213 403 254 167 4 chr13 18655307 18655535 -101089363 - L1MC1 LINE L1 -3275 2805 2541 * 935 154 77 16 chr13 18655541 18655723 -101089175 - MER21B LTR ERV1 -364 499 307 715 118 133 0 chr13 18655797 18655932 -101088966 - MER21A LTR ERV1 -778 153 1 569 159 45 89 chr13 18655932 18656089 -101088809 - MER21A-int LTR ERV1 0 4191 4042 1348 148 70 0 chr13 18656106 18656376 -101088522 - L1MA8 LINE L1 -22 6269 5981 405 288 93 0 chr13 18656518 18656636 -101088262 + MIR SINE MIR 110 238 -24 32 75 0 0 chr13 18657274 18657341 -101087557 + AT_rich Low_complexity Low_complexity 1 67 0 2507 84 0 0 chr13 18657362 18657673 -101087225 - AluY SINE Alu 0 311 1 2425 98 0 3 chr13 18658761 18659067 -101085831 + AluSx SINE Alu 1 305 -7 276 318 31 0 chr13 18661616 18661745 -101083153 - L1MC1 LINE L1 -5936 134 2 735 148 39 23 chr13 18661884 18662012 -101082886 - FLAM_C SINE Alu -3 130 1 316 189 132 0 chr13 18662035 18662159 -101082739 - L1MEd LINE L1 -4739 1321 895 247 325 97 0 chr13 18662656 18662770 -101082128 - MIR3 SINE MIR -2 206 82 1777 159 31 3 chr13 18663183 18663472 -101081426 + AluJb SINE Alu 6 302 -10 995 112 22 39 chr13 18664467 18664646 -101080252 - THE1C LTR MaLR 0 375 200 258 267 36 67 chr13 18664644 18664809 -101080089 - LTR16A LTR ERVL -228 222 63 * 378 224 95 20 chr13 18665154 18665301 -101079597 - MLT1H LTR MaLR 0 549 392 2084 108 0 69 chr13 18665736 18666069 -101078829 + AluSx SINE Alu 1 310 -2 3471 75 37 0 chr13 18666116 18666597 -101078301 - L1PA4 LINE L1 0 6155 5657 2097 61 0 41 chr13 18666932 18667227 -101077671 + L1PA8 LINE L1 5887 6169 -3 232 237 52 41 chr13 18668020 18668117 -101076781 - MLT1-int LTR MaLR -1269 102 5 2550 159 61 10 chr13 18668130 18668619 -101076279 + L1MB7 LINE L1 5671 6184 0 269 235 103 7 chr13 18668619 18668749 -101076149 - MLT2E LTR ERVL -14 614 472 802 243 35 31 chr13 18668877 18669132 -101075766 - MLT2E LTR ERVL -353 275 20 305 349 105 0 chr13 18669992 18670164 -101074734 - L1MC/D LINE L1 -2174 5634 5445 636 242 144 43 chr13 18670446 18670814 -101074084 - HAL1 LINE L1 -1514 993 589 307 270 138 20 chr13 18670816 18670968 -101073930 - L2 LINE L2 -231 3082 2913 2156 121 0 3 chr13 18671094 18671392 -101073506 - AluSx SINE Alu -4 308 12 318 265 114 58 chr13 18671469 18671603 -101073295 - L1MC/D LINE L1 -1065 5081 4956 2349 57 7 4 chr13 18671603 18671925 -101072973 + AluY SINE Alu 1 323 0 318 265 114 58 chr13 18671925 18672132 -101072766 - L1MC/D LINE L1 -1190 4956 4721 1937 152 0 7 chr13 18672176 18672472 -101072426 + AluJb SINE Alu 1 294 -18 2160 108 10 0 chr13 18673633 18673921 -101070977 + AluSx SINE Alu 1 291 -21 1797 130 41 0 chr13 18674879 18675169 -101069729 - AluSx SINE Alu 0 301 1 773 189 0 0 chr13 18675211 18675338 -101069560 + FLAM_C SINE Alu 1 127 -16 1729 167 7 7 chr13 18675354 18675664 -101069234 + AluSx SINE Alu 11 312 0 2378 81 3 3 chr13 18676209 18676516 -101068382 - AluSq SINE Alu -6 307 1 204 163 0 23 chr13 18676523 18676566 -101068332 + T-rich Low_complexity Low_complexity 4 45 0 26 30 0 0 chr13 18676756 18676789 -101068109 + AT_rich Low_complexity Low_complexity 1 33 0 240 335 45 53 chr13 18677293 18677423 -101067475 + L2 LINE L2 707 836 -2478 2198 90 0 68 chr13 18677423 18677744 -101067154 - AluSx SINE Alu -13 299 1 240 335 45 53 chr13 18677744 18678010 -101066888 + L2 LINE L2 836 1100 -2214 1764 191 33 15 chr13 18678825 18679186 -101065712 + L1M4c LINE L1 1227 1597 -4787 186 43 0 0 chr13 18679186 18679209 -101065689 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1764 191 33 15 chr13 18679209 18679240 -101065658 + L1M4c LINE L1 1597 1626 -4758 2149 125 3 0 chr13 18679241 18679545 -101065353 + AluSx SINE Alu 1 305 -7 6832 235 39 17 chr13 18679545 18682028 -101062870 + L1M4c LINE L1 2125 4666 -1716 1653 203 29 7 chr13 18682077 18682495 -101062403 - L1M4 LINE L1 -1272 4874 4448 2096 156 60 24 chr13 18682664 18682738 -101062160 + L1MB4 LINE L1 5705 5775 -405 1519 158 131 0 chr13 18682738 18683036 -101061862 + MER44D DNA MER2_type 1 607 -2 2096 156 60 24 chr13 18683036 18683415 -101061483 + L1MB4 LINE L1 5775 6174 -6 345 171 11 34 chr13 18683426 18683514 -101061384 + L1MB8 LINE L1 6093 6178 0 1402 199 81 0 chr13 18683526 18683798 -101061100 + AluJb SINE Alu 2 295 -17 300 190 70 60 chr13 18683800 18683900 -101060998 + L1ME3A LINE L1 5901 6001 -169 220 206 270 16 chr13 18684317 18684380 -101060518 - MIR SINE MIR -151 111 33 1024 105 0 0 chr13 18686430 18686563 -101058335 - AluSq/x SINE Alu -180 133 1 978 207 0 6 chr13 18686732 18686906 -101057992 + FAM SINE Alu 2 174 -1 1564 122 5 0 chr13 18687638 18687851 -101057047 - AluSg/x SINE Alu -22 288 75 821 138 0 0 chr13 18688381 18688497 -101056401 + AluSq/x SINE Alu 1 116 -197 324 0 0 0 chr13 18688498 18688534 -101056364 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1543 174 60 3 chr13 18688834 18689116 -101055782 - AluSq SINE Alu -15 298 1 896 234 9 14 chr13 18689337 18689551 -101055347 - MER20 DNA MER1_type -1 218 6 1557 205 21 0 chr13 18689947 18690235 -101054663 + AluJo SINE Alu 1 294 -18 2314 96 0 0 chr13 18690384 18690677 -101054221 - AluSg SINE Alu -17 293 1 1142 288 81 36 chr13 18690727 18691603 -101053295 - L2 LINE L2 -26 3287 2287 275 327 98 72 chr13 18691785 18692131 -101052767 - L2 LINE L2 -55 3217 2863 2132 112 3 7 chr13 18692189 18692485 -101052413 + AluSg SINE Alu 1 295 -15 257 322 39 17 chr13 18692570 18692750 -101052148 + HAL1 LINE L1 223 406 -2101 1441 96 0 0 chr13 18692837 18693045 -101051853 + L1P3 LINE L1 1084 1291 -5170 1683 66 0 0 chr13 18693049 18693277 -101051621 + L1P LINE L1 3500 3727 -2419 27 62 0 0 chr13 18693379 18693427 -101051471 + AT_rich Low_complexity Low_complexity 1 48 0 285 228 0 0 chr13 18694707 18694764 -101050134 + MER5A DNA MER1_type 132 188 -1 2456 80 0 0 chr13 18695533 18695835 -101049063 + AluY SINE Alu 1 302 -9 253 352 26 0 chr13 18696879 18696967 -101047931 + MIR SINE MIR 59 146 -62 205 100 320 0 chr13 18696983 18697033 -101047865 - MER5C DNA MER1_type -5 319 254 199 320 120 0 chr13 18697096 18697196 -101047702 - MER5C DNA MER1_type -208 116 5 226 234 125 16 chr13 18697515 18697643 -101047255 - HAL1b LINE L1 -18 1330 1189 180 245 38 19 chr13 18698059 18698112 -101046786 - L2 LINE L2 -13 3259 3206 201 186 17 68 chr13 18698285 18698344 -101046554 + T-rich Low_complexity Low_complexity 6 61 0 1067 76 0 0 chr13 18698346 18698477 -101046421 - AluSg SINE Alu -179 131 1 368 219 0 0 chr13 18698481 18698563 -101046335 + MER69 DNA AcHobo 2443 2524 -2 253 380 53 12 chr13 18698606 18698777 -101046121 + L2 LINE L2 1789 1966 -1348 2337 90 0 7 chr13 18700160 18700459 -101044439 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 18701259 18701282 -101043616 + (T)n Simple_repeat Simple_repeat 1 23 0 437 299 47 0 chr13 18702657 18702784 -101042114 - L2 LINE L2 -1 3312 3180 840 212 161 20 chr13 18703333 18703625 -101041273 - MER46C DNA MER2_type -1 337 5 207 0 0 0 chr13 18705438 18705461 -101039437 + (TA)n Simple_repeat Simple_repeat 2 24 0 2283 66 49 0 chr13 18705461 18705748 -101039150 - AluY SINE Alu -10 301 1 1327 230 33 9 chr13 18706313 18706644 -101038254 - MER58B DNA MER1_type -2 339 1 528 241 43 0 chr13 18706997 18707138 -101037760 + MIR SINE MIR 92 238 -24 433 329 0 7 chr13 18707368 18707523 -101037375 + MARNA DNA Mariner 43 196 -390 219 246 0 0 chr13 18707561 18707618 -101037280 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 339 325 31 19 chr13 18708769 18708929 -101035969 - L2 LINE L2 -1370 1944 1783 1794 194 54 71 chr13 18708982 18709502 -101035396 - MER9 LTR ERVK 0 511 1 23603 173 19 14 chr13 18709502 18714734 -101030164 - HERVK9 LTR ERVK 0 7321 1626 2979 165 35 54 chr13 18714730 18715643 -101029255 - HERVK9 LTR ERVK -5071 874 1 * 1927 186 58 44 chr13 18715643 18716147 -101028751 - MER9 LTR ERVK 0 511 1 242 221 174 62 chr13 18716244 18716324 -101028574 + L1MC/D LINE L1 5533 5603 -2205 2146 118 0 30 chr13 18716324 18716629 -101028269 + AluSx SINE Alu 1 296 -16 242 221 174 62 chr13 18716629 18716743 -101028155 + L1MC/D LINE L1 5603 5749 -2059 489 181 0 0 chr13 18717656 18717739 -101027159 - FRAM/FAM SINE Alu -94 82 1 243 0 0 0 chr13 18717758 18717785 -101027113 + (A)n Simple_repeat Simple_repeat 1 27 0 354 309 40 40 chr13 18718180 18718306 -101026592 + MIR SINE MIR 16 141 -67 318 294 35 12 chr13 18718412 18718497 -101026401 + L1MA4A LINE L1 834 920 -5929 12277 183 82 12 chr13 18718497 18718532 -101026366 + L1MA4A LINE L1 2081 2112 -4893 1492 130 123 53 chr13 18718532 18718816 -101026082 - AluSg SINE Alu -6 304 1 12277 183 82 12 chr13 18718816 18723362 -101021536 + L1MA4A LINE L1 2112 6982 -23 2001 250 127 49 chr13 18723357 18723723 -101021175 + HAL1 LINE L1 1171 1507 -1000 * 725 197 31 0 chr13 18723723 18723850 -101021048 - FLAM_A SINE Alu -2 131 1 2001 250 127 49 chr13 18723850 18724416 -101020482 + HAL1 LINE L1 1507 2220 -287 2141 133 3 3 chr13 18724416 18724724 -101020174 + AluSx SINE Alu 1 308 -4 2001 250 127 49 chr13 18724724 18724992 -101019906 + HAL1 LINE L1 2220 2466 -41 2358 58 7 3 chr13 18724992 18725287 -101019611 - AluY SINE Alu -15 296 1 368 219 0 0 chr13 18725291 18725373 -101019525 + MER69 DNA AcHobo 2443 2524 -2 253 380 53 12 chr13 18725416 18725587 -101019311 + L2 LINE L2 1789 1966 -1348 2269 97 0 10 chr13 18726970 18727270 -101017628 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 18728070 18728093 -101016805 + (T)n Simple_repeat Simple_repeat 1 23 0 437 299 47 0 chr13 18729468 18729595 -101015303 - L2 LINE L2 -1 3312 3180 370 200 13 0 chr13 18730144 18730219 -101014679 - MER46C DNA MER2_type -1 337 262 373 219 0 0 chr13 18730552 18730634 -101014264 - FRAM/FAM SINE Alu -85 81 1 234 0 0 0 chr13 18730654 18730680 -101014218 + (A)n Simple_repeat Simple_repeat 1 26 0 512 286 43 36 chr13 18731075 18731215 -101013683 + MIR3 SINE MIR 16 156 -52 253 254 0 0 chr13 18731352 18731407 -101013491 + A-rich Low_complexity Low_complexity 1 55 0 578 323 84 46 chr13 18731413 18731684 -101013214 + L1MEd LINE L1 102 361 -5758 2201 82 0 36 chr13 18731684 18731987 -101012911 + AluSq SINE Alu 1 292 -21 578 323 84 46 chr13 18731987 18732236 -101012662 + L1MEd LINE L1 361 642 -5477 23 33 0 0 chr13 18732346 18732376 -101012522 + AT_rich Low_complexity Low_complexity 1 30 0 804 227 18 0 chr13 18732376 18732539 -101012359 - AluJo SINE Alu -30 282 117 23 0 0 0 chr13 18732546 18732569 -101012329 + AT_rich Low_complexity Low_complexity 1 23 0 2181 109 3 0 chr13 18732569 18732862 -101012036 - AluSg SINE Alu -16 294 1 210 365 17 26 chr13 18733925 18734040 -101010858 - L3 LINE CR1 -81 1496 1383 234 237 129 11 chr13 18735100 18735193 -101009705 + MER112 DNA MER1_type 113 216 -44 214 278 83 30 chr13 18735631 18735764 -101009134 - L2 LINE L2 -32 3281 3142 * 308 333 57 0 chr13 18735731 18735854 -101009044 - L2 LINE L2 -11 3302 3173 2160 115 10 10 chr13 18735856 18736160 -101008738 - AluSg SINE Alu -6 304 1 1380 287 105 53 chr13 18736293 18737178 -101007720 - L2 LINE L2 -337 2977 2047 680 47 0 0 chr13 18737340 18737426 -101007472 - AluSg/x SINE Alu -8 301 216 2119 69 0 36 chr13 18737426 18737701 -101007197 - AluSg1 SINE Alu -44 265 1 2028 144 20 0 chr13 18738089 18738381 -101006517 + AluSx SINE Alu 1 298 -14 1826 144 30 4 chr13 18738572 18738843 -101006055 + AluJo SINE Alu 1 278 -34 1001 272 121 52 chr13 18738843 18738995 -101005903 + L1MCc LINE L1 1177 1317 -5805 2421 75 0 3 chr13 18738995 18739290 -101005608 + AluY SINE Alu 1 294 -17 1001 272 121 52 chr13 18739290 18740075 -101004823 + L1MCc LINE L1 1317 2427 -4695 2223 87 31 3 chr13 18740075 18740363 -101004535 + AluSx SINE Alu 1 296 -16 1001 272 121 52 chr13 18740363 18740633 -101004265 + L1MCc LINE L1 2427 2677 -4445 1784 205 50 44 chr13 18740727 18740759 -101004139 + L1MC4 LINE L1 7127 7157 -885 1881 180 0 0 chr13 18740759 18741065 -101003833 + AluJo SINE Alu 1 306 -6 1784 205 50 44 chr13 18741065 18741529 -101003369 + L1MC4 LINE L1 7157 7626 -416 1865 162 7 10 chr13 18741531 18741828 -101003070 + AluSx SINE Alu 1 296 -16 644 183 7 0 chr13 18741828 18741965 -101002933 + GA-rich Low_complexity Low_complexity 1 138 0 456 244 16 0 chr13 18741987 18742110 -101002788 + L1MC4 LINE L1 7608 7732 -310 437 202 36 0 chr13 18742116 18742200 -101002698 - Tigger5 DNA MER2_type 0 2323 2237 354 167 28 14 chr13 18742254 18742326 -101002572 - Tigger5 DNA MER2_type 0 2323 2251 243 226 19 0 chr13 18742296 18742349 -101002549 - Tigger5 DNA MER2_type -2268 55 2 * 951 215 98 7 chr13 18742351 18742638 -101002260 + L1MC4 LINE L1 7741 8041 -1 1039 190 0 0 chr13 18742645 18742819 -101002079 + FRAM SINE Alu 1 172 -4 402 237 20 33 chr13 18742822 18742974 -101001924 + L1MCc LINE L1 2837 2986 -4136 520 229 35 24 chr13 18743016 18743144 -101001754 + L1MCc LINE L1 2915 3047 -3894 1564 162 72 30 chr13 18743144 18743478 -101001420 + MER7A DNA MER2_type 1 346 0 520 229 35 24 chr13 18743478 18743519 -101001379 + L1MCc LINE L1 3047 3086 -3855 2102 134 3 13 chr13 18743532 18743838 -101001060 + AluSx SINE Alu 1 303 -9 657 327 153 12 chr13 18744026 18744655 -101000243 - L2 LINE L2 -1965 1349 573 2350 80 10 13 chr13 18744685 18744987 -100999911 - AluSg SINE Alu -9 301 1 202 306 116 16 chr13 18746568 18746689 -100998209 - L3 LINE CR1 -139 1438 1306 23 54 0 0 chr13 18747330 18747367 -100997531 + GC_rich Low_complexity Low_complexity 1 37 0 201 183 32 65 chr13 18747369 18747462 -100997436 + G-rich Low_complexity Low_complexity 3 92 0 31 82 0 0 chr13 18747511 18747584 -100997314 + GC_rich Low_complexity Low_complexity 1 73 0 38 61 0 0 chr13 18747672 18747738 -100997160 + GC_rich Low_complexity Low_complexity 1 66 0 305 223 33 12 chr13 18747942 18748193 -100996705 + (CGGGG)n Simple_repeat Simple_repeat 1 256 0 1742 168 10 7 chr13 18749061 18749353 -100995545 + AluJo SINE Alu 16 308 -4 210 321 179 28 chr13 18750123 18750335 -100994563 - L2 LINE L2 -849 2465 2222 1502 170 93 14 chr13 18750812 18751101 -100993797 + AluJb SINE Alu 1 312 0 1636 187 7 14 chr13 18751161 18751455 -100993443 - AluJb SINE Alu -20 292 1 2203 138 0 0 chr13 18751541 18751839 -100993059 - AluSx SINE Alu -10 302 5 306 332 108 13 chr13 18752032 18752348 -100992550 + L1MC4a LINE L1 4965 5310 -836 1653 92 176 44 chr13 18752348 18752621 -100992277 + AluSg1 SINE Alu 1 309 0 691 281 204 18 chr13 18752808 18753200 -100991698 + L1MC4a LINE L1 5495 5959 -1849 2421 80 0 46 chr13 18753962 18754287 -100990611 + AluSp SINE Alu 1 310 -3 681 186 106 53 chr13 18754545 18754613 -100990285 - MSTD LTR MaLR 0 396 333 2372 104 3 0 chr13 18754613 18754911 -100989987 + AluSp SINE Alu 1 299 -14 681 186 106 53 chr13 18754911 18755030 -100989868 - MSTD LTR MaLR -63 333 199 501 159 53 18 chr13 18755059 18755172 -100989726 - MSTD LTR MaLR -279 117 1 235 290 29 0 chr13 18755452 18755521 -100989377 + L1MC/D LINE L1 5713 5783 -2025 2308 86 3 7 chr13 18755936 18756228 -100988670 + AluSx SINE Alu 1 291 -21 526 194 31 0 chr13 18756507 18756636 -100988262 + CT-rich Low_complexity Low_complexity 4 136 0 219 271 4 4 chr13 18758074 18758148 -100986750 + MIR SINE MIR 79 153 -55 493 209 15 45 chr13 18758797 18758931 -100985967 + MER5B DNA MER1_type 8 137 -41 217 274 208 19 chr13 18759209 18759315 -100985583 - MER5A DNA MER1_type 0 189 64 1893 116 65 34 chr13 18759371 18759665 -100985233 - AluJb SINE Alu -9 303 1 247 319 0 14 chr13 18759665 18759737 -100985161 - MER5A DNA MER1_type -114 75 5 547 248 35 25 chr13 18759846 18760044 -100984854 - L1M4 LINE L1 -1379 4767 4568 247 289 158 9 chr13 18760158 18760272 -100984626 - MIR3 SINE MIR -46 162 32 349 363 0 11 chr13 18761972 18762151 -100982747 + (CACG)n Simple_repeat Simple_repeat 1 177 0 * 489 309 3 0 chr13 18762020 18762662 -100982236 + (CA)n Simple_repeat Simple_repeat 1 643 0 427 333 3 3 chr13 18762683 18763004 -100981894 + (CA)n Simple_repeat Simple_repeat 1 321 0 301 274 76 6 chr13 18762961 18763118 -100981780 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 440 297 108 19 chr13 18763196 18763408 -100981490 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 18764277 18764355 -100980543 + L2 LINE L2 2420 2498 -816 2653 33 0 3 chr13 18767279 18767581 -100977317 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 18768029 18768139 -100976759 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 18768344 18768647 -100976251 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 18768647 18768964 -100975934 + AluSg SINE Alu 1 298 -12 2349 108 0 0 chr13 18770554 18770850 -100974048 - AluSq SINE Alu -12 301 6 1962 138 3 39 chr13 18771139 18771451 -100973447 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 18771536 18771993 -100972905 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 18772407 18772512 -100972386 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 18773120 18773164 -100971734 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 18773774 18773797 -100971101 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 18774144 18774247 -100970651 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 18774250 18774302 -100970596 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 18774306 18774763 -100970135 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 18774764 18774899 -100969999 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 18774952 18775046 -100969852 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 18775109 18775188 -100969710 + MIR3 SINE MIR 82 160 -48 522 291 101 11 chr13 18775216 18775405 -100969493 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 18775966 18776267 -100968631 - AluSx SINE Alu -12 300 1 2430 96 0 0 chr13 18776729 18777030 -100967868 - AluSg SINE Alu -9 301 1 534 189 117 0 chr13 18777038 18777149 -100967749 - AluJb SINE Alu -188 124 1 315 262 139 25 chr13 18777149 18777271 -100967627 + L1MC4a LINE L1 5778 5913 -1895 380 260 38 46 chr13 18777710 18777927 -100966971 + L1MEc LINE L1 1854 2040 -4500 578 315 46 0 chr13 18777982 18778201 -100966697 + MIR SINE MIR 34 262 0 893 71 0 0 chr13 18778205 18778352 -100966546 - Alu SINE Alu 0 315 169 2038 276 131 21 chr13 18778545 18780345 -100964553 + HAL1 LINE L1 1 2023 -484 597 82 0 0 chr13 18780363 18780448 -100964450 - Alu SINE Alu -8 304 220 303 328 12 12 chr13 18780568 18780739 -100964159 + (CCCA)n Simple_repeat Simple_repeat 3 173 0 * 427 315 6 0 chr13 18780651 18780829 -100964069 + (CA)n Simple_repeat Simple_repeat 1 179 0 301 274 76 6 chr13 18780786 18780943 -100963955 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 * 440 297 108 19 chr13 18781021 18781233 -100963665 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 18782101 18782179 -100962719 + L2 LINE L2 2420 2498 -816 2688 33 0 0 chr13 18785103 18785404 -100959494 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 18785852 18785962 -100958936 + MIR SINE MIR 103 232 -30 2384 92 0 7 chr13 18786167 18786470 -100958428 + AluSq SINE Alu 1 301 -12 2133 76 3 66 chr13 18786470 18786772 -100958126 + AluSg SINE Alu 1 283 -27 2149 115 7 3 chr13 18788377 18788672 -100956226 - AluSq SINE Alu -12 301 6 1913 138 3 39 chr13 18788962 18789274 -100955624 - AluJb SINE Alu -11 301 1 228 167 379 0 chr13 18789279 18789345 -100955553 - MLT1I LTR MaLR -277 132 42 1281 224 71 0 chr13 18789359 18789685 -100955213 - L1MD2 LINE L1 -12 6347 5999 297 235 49 0 chr13 18789735 18789816 -100955082 - L1MD2 LINE L1 -440 5919 5835 272 295 67 9 chr13 18790229 18790334 -100954564 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 18790942 18790986 -100953912 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 18791596 18791619 -100953279 + AT_rich Low_complexity Low_complexity 1 23 0 581 165 29 0 chr13 18791966 18792069 -100952829 - AluJ SINE Alu -17 295 190 259 231 0 0 chr13 18792072 18792124 -100952774 + LTR30 LTR ERV1 1 52 -670 2927 127 18 9 chr13 18792128 18792585 -100952313 + LTR12 LTR ERV1 123 583 -131 667 215 37 0 chr13 18792586 18792721 -100952177 - AluJ SINE Alu -125 187 48 442 213 11 11 chr13 18792774 18792868 -100952030 + FRAM SINE Alu 1 93 -83 224 354 0 0 chr13 18792931 18793010 -100951888 + MIR3 SINE MIR 82 160 -48 487 289 95 11 chr13 18793038 18793228 -100951670 - MIR SINE MIR 0 262 57 2269 93 7 10 chr13 18793791 18794092 -100950806 - AluSx SINE Alu -12 300 1 2410 92 0 3 chr13 18794554 18794858 -100950040 - AluSx SINE Alu -9 303 1 3952 200 78 33 chr13 18794859 18795117 -100949781 + L1MB7 LINE L1 4095 4340 -1844 1018 141 77 0 chr13 18795117 18795287 -100949611 + U2 snRNA snRNA 5 187 -1 3952 200 78 33 chr13 18795287 18796728 -100948170 + L1MB7 LINE L1 4340 5901 -283 395 81 242 0 chr13 18796728 18796790 -100948108 - MADE1 DNA Mariner 0 80 4 3952 200 78 33 chr13 18796790 18797088 -100947810 + L1MB7 LINE L1 5901 6184 0 562 221 58 0 chr13 18797085 18797239 -100947659 + L1M4 LINE L1 3758 3920 -2226 * 297 221 96 10 chr13 18797229 18797333 -100947565 - L1M4 LINE L1 -2154 3992 3880 * 1628 198 121 5 chr13 18797311 18797716 -100947182 + L1MD1 LINE L1 5783 6234 -8 2479 82 0 0 chr13 18797760 18798066 -100946832 - AluY SINE Alu -5 306 1 228 190 0 35 chr13 18798276 18798334 -100946564 - L1MC4 LINE L1 -1339 6703 6648 26 50 0 0 chr13 18798867 18798907 -100945991 + AT_rich Low_complexity Low_complexity 1 40 0 3061 175 30 25 chr13 18799041 18799631 -100945267 + MER7C DNA MER2_type 10 602 0 1385 141 77 12 chr13 18799631 18799878 -100945020 - Tigger3(Golem) DNA MER2_type -2744 285 23 1361 94 0 0 chr13 18799888 18800069 -100944829 - AluY SINE Alu -4 307 127 873 195 39 66 chr13 18801068 18801324 -100943574 + L1MC5 LINE L1 7176 7424 -537 1777 194 38 3 chr13 18801642 18801983 -100942915 + L1MB7 LINE L1 5730 6082 -102 4469 112 12 155 chr13 18801983 18803557 -100941341 - pTR5 LTR ERV1 0 2606 1524 493 53 11 117 chr13 18803565 18803594 -100941304 + L1MB7 LINE L1 6089 6119 -65 2161 107 3 3 chr13 18803594 18803885 -100941013 + AluSg SINE Alu 2 292 -18 493 53 11 117 chr13 18803885 18803949 -100940949 + L1MB7 LINE L1 6119 6172 -12 2409 91 3 0 chr13 18804527 18804823 -100940075 - AluSc SINE Alu -12 297 1 560 253 35 29 chr13 18805070 18805244 -100939654 - L1MC4 LINE L1 -2085 5723 5549 248 264 86 0 chr13 18805258 18805421 -100939477 - L1MC4 LINE L1 -725 5439 5263 1106 256 20 8 chr13 18805452 18805929 -100938969 + MER90 LTR ERV1 74 614 0 2111 139 0 16 chr13 18806120 18806436 -100938462 - AluSx SINE Alu -1 311 1 7303 95 8 6 chr13 18806736 18808565 -100936333 - L1PA8 LINE L1 0 6172 4340 2371 110 0 0 chr13 18808637 18808946 -100935952 + AluSg1 SINE Alu 1 309 0 2209 113 0 3 chr13 18809227 18809519 -100935379 - AluSg SINE Alu -19 291 1 2414 81 3 0 chr13 18810528 18810824 -100934074 - AluSx SINE Alu -7 305 9 2413 38 11 3 chr13 18811222 18811509 -100933389 + AluY SINE Alu 1 289 -22 1258 156 66 5 chr13 18811609 18811821 -100933077 - AluJb SINE Alu -3 309 85 588 230 15 50 chr13 18811823 18812023 -100932875 - L1MC4 LINE L1 -2091 4055 3863 639 140 5 10 chr13 18812029 18812294 -100932604 - AluJb SINE Alu 0 312 1 464 263 79 44 chr13 18812297 18812525 -100932373 - L1MC4 LINE L1 -2286 3860 3625 1314 193 60 60 chr13 18864044 18864198 -100880700 + MER58B DNA MER1_type 11 164 -2256 2273 110 0 0 chr13 18864198 18864498 -100880400 - AluSp SINE Alu -13 300 1 1314 193 60 60 chr13 18864498 18864674 -100880224 + MER58B DNA MER1_type 163 341 0 21 36 0 0 chr13 18865024 18865052 -100879846 + AT_rich Low_complexity Low_complexity 1 28 0 362 289 134 25 chr13 18865278 18865517 -100879381 - L2 LINE L2 -824 2490 2226 1907 223 60 10 chr13 18866822 18867319 -100877579 + Charlie1b DNA MER1_type 2 523 0 2026 111 19 26 chr13 18868417 18868724 -100876174 + AluSx SINE Alu 1 305 -7 276 185 420 17 chr13 18869370 18869489 -100875409 + L1MC5 LINE L1 7747 7913 -48 797 159 0 15 chr13 18869587 18869719 -100875179 - FLAM_C SINE Alu -3 130 1 21 0 0 0 chr13 18869873 18869894 -100875004 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 18871731 18871754 -100873144 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 18872265 18872290 -100872608 + (T)n Simple_repeat Simple_repeat 1 25 0 31 0 0 0 chr13 18873652 18873683 -100871215 + AT_rich Low_complexity Low_complexity 1 31 0 214 337 117 42 chr13 18873683 18873782 -100871116 - L2 LINE L2 -36 3236 3146 1119 188 119 50 chr13 18873782 18874102 -100870796 + MER2 DNA MER2_type 3 344 0 214 337 117 42 chr13 18874102 18874311 -100870587 - L2 LINE L2 -126 3146 2905 478 187 134 0 chr13 18874709 18874843 -100870055 + L1M4 LINE L1 4263 4414 -1732 1034 194 45 5 chr13 18874844 18875045 -100869853 + AluJb SINE Alu 84 292 -20 1752 174 7 7 chr13 18875140 18875422 -100869476 + AluJb SINE Alu 1 282 -30 23 0 0 0 chr13 18875422 18875445 -100869453 + AT_rich Low_complexity Low_complexity 1 23 0 717 220 13 13 chr13 18875463 18875622 -100869276 - FRAM SINE Alu -11 165 7 21 36 0 0 chr13 18875788 18875816 -100869082 + AT_rich Low_complexity Low_complexity 1 28 0 395 100 0 0 chr13 18876153 18876203 -100868695 - MER8 DNA MER2_type 0 239 190 * 2398 148 39 11 chr13 18876198 18876636 -100868262 + Tigger2 DNA MER2_type 2269 2718 0 2374 164 25 39 chr13 18877114 18877627 -100867271 - L1MB8 LINE L1 -1 6177 5672 889 186 45 45 chr13 18877629 18877828 -100867070 - MER20 DNA MER1_type -20 199 1 1651 167 25 41 chr13 18877848 18878052 -100866846 - AluSx SINE Alu 0 312 113 1952 125 24 53 chr13 18878052 18878427 -100866471 - THE1B LTR MaLR 0 364 1 1651 167 25 41 chr13 18878427 18878539 -100866359 - AluSx SINE Alu -199 113 1 390 224 0 0 chr13 18879539 18879606 -100865292 - MER58A DNA MER1_type -39 68 2 2045 167 129 21 chr13 18879977 18880060 -100864838 + MLT1C LTR MaLR 1 74 -393 2143 111 24 0 chr13 18880060 18880349 -100864549 + AluSx SINE Alu 1 296 -16 2045 167 129 21 chr13 18880349 18880685 -100864213 + MLT1C LTR MaLR 74 465 -2 2052 143 0 13 chr13 18880927 18881241 -100863657 + AluSx SINE Alu 1 310 -2 183 156 0 0 chr13 18881572 18881604 -100863294 + (CATA)n Simple_repeat Simple_repeat 3 34 0 508 288 93 42 chr13 18881666 18881881 -100863017 + MIR SINE MIR 23 248 -14 1588 213 7 7 chr13 18884252 18884548 -100860350 - AluJb SINE Alu -16 296 1 289 271 21 0 chr13 18884752 18884848 -100860050 - Charlie2 DNA MER1_type -158 2704 2607 1488 203 119 21 chr13 18884977 18885558 -100859340 - Charlie2 DNA MER1_type -322 2540 1903 240 250 111 9 chr13 18885596 18885704 -100859194 - Charlie2 DNA MER1_type -2464 318 200 2162 115 60 3 chr13 18886089 18886420 -100858478 + MER41C LTR ERV1 1 350 -204 456 151 24 24 chr13 18886420 18886546 -100858352 + (TA)n Simple_repeat Simple_repeat 1 126 0 1078 138 76 57 chr13 18886555 18886765 -100858133 + MER41C LTR ERV1 341 554 0 1202 272 116 14 chr13 18887126 18887232 -100857666 + L2 LINE L2 2552 2646 -667 1979 126 13 23 chr13 18887232 18887541 -100857357 - AluSx SINE Alu -6 306 1 1202 272 116 14 chr13 18887541 18888115 -100856783 + L2 LINE L2 2646 3307 -6 2469 89 0 0 chr13 18888837 18889141 -100855757 - AluSc SINE Alu -5 304 1 510 291 0 7 chr13 18890310 18890458 -100854440 + MIR SINE MIR 6 152 -110 454 272 188 74 chr13 18893356 18893575 -100851323 - L2 LINE L2 -372 2942 2749 2231 128 0 0 chr13 18893575 18893881 -100851017 - AluSx SINE Alu -6 306 1 454 272 188 74 chr13 18893881 18894322 -100850576 - L2 LINE L2 -565 2749 2207 1684 120 0 0 chr13 18894384 18894601 -100850297 + AluSq SINE Alu 3 219 -94 246 224 176 35 chr13 18894640 18894810 -100850088 + L1 LINE L1 4882 5075 -1071 1406 182 4 13 chr13 18894882 18895171 -100849727 + L1MD3 LINE L1 7510 7973 -3 541 270 137 35 chr13 18895177 18895213 -100849685 + L1ME LINE L1 5188 5219 -902 1580 125 225 36 chr13 18895213 18895573 -100849325 - MSTA LTR MaLR 0 428 1 541 270 137 35 chr13 18895573 18895963 -100848935 + L1ME LINE L1 5219 5659 -462 2159 144 0 0 chr13 18895969 18896268 -100848630 + AluSx SINE Alu 1 299 -13 2129 137 75 27 chr13 18897367 18897769 -100847129 + L1MC1 LINE L1 5904 6324 -9 1730 148 47 7 chr13 18900097 18900374 -100844524 - AluSx SINE Alu -23 289 2 38 51 0 0 chr13 18900892 18900951 -100843947 + AT_rich Low_complexity Low_complexity 1 59 0 2164 110 0 7 chr13 18901113 18901412 -100843486 - AluSq SINE Alu -16 297 1 2365 89 0 0 chr13 18901669 18901960 -100842938 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr13 18902335 18902364 -100842534 + AT_rich Low_complexity Low_complexity 1 29 0 516 146 12 12 chr13 18902918 18903032 -100841866 - L1M LINE L1 -830 5316 5211 771 104 0 9 chr13 18903057 18903172 -100841726 - AluSg/x SINE Alu 0 309 196 767 217 166 5 chr13 18903172 18903389 -100841509 + HAL1 LINE L1 1486 1737 -770 980 106 8 0 chr13 18903463 18903595 -100841303 - FLAM_C SINE Alu 0 133 1 595 111 56 0 chr13 18903844 18903934 -100840964 - AluSg/x SINE Alu -14 295 201 2041 102 4 0 chr13 18903937 18904202 -100840696 + AluSp SINE Alu 47 312 -1 260 229 110 37 chr13 18904223 18904332 -100840566 + HAL1 LINE L1 1729 1845 -662 392 254 0 87 chr13 18904407 18904505 -100840393 + HAL1 LINE L1 2159 2235 -272 1557 165 0 73 chr13 18904505 18904820 -100840078 + AluJb SINE Alu 1 292 -20 392 254 0 87 chr13 18904820 18904906 -100839992 + HAL1 LINE L1 2235 2327 -180 659 236 85 43 chr13 18904911 18905030 -100839868 - L1M4 LINE L1 -883 5263 5151 2387 85 7 3 chr13 18905030 18905337 -100839561 - AluSc SINE Alu -1 308 1 659 236 85 43 chr13 18905337 18905475 -100839423 - L1M4 LINE L1 -995 5151 4995 2278 108 0 19 chr13 18905719 18906034 -100838864 + AluSx SINE Alu 1 309 -3 185 313 102 8 chr13 18907079 18907147 -100837751 + MIR SINE MIR 79 139 -123 1357 155 17 67 chr13 18907147 18907444 -100837454 + AluJo SINE Alu 1 282 -30 357 24 0 0 chr13 18907445 18907487 -100837411 + (GA)n Simple_repeat Simple_repeat 1 42 0 185 313 102 8 chr13 18907487 18907544 -100837354 + MIR SINE MIR 138 218 -44 303 318 85 0 chr13 18907881 18908010 -100836888 + L2 LINE L2 3133 3272 0 2054 125 4 0 chr13 18908086 18908365 -100836533 + AluSg SINE Alu 1 280 -30 331 73 36 0 chr13 18908367 18908422 -100836476 + (TA)n Simple_repeat Simple_repeat 1 57 0 442 295 13 13 chr13 18908426 18908582 -100836316 + MIR SINE MIR 103 258 -4 2329 81 0 14 chr13 18908582 18908877 -100836021 + AluSg SINE Alu 1 291 -19 268 257 57 57 chr13 18908900 18909040 -100835858 + MIR3 SINE MIR 69 208 0 2493 115 37 91 chr13 18909048 18909534 -100835364 + L1MB2 LINE L1 5671 6130 -41 1131 68 0 0 chr13 18909534 18909667 -100835231 + AluYb8 SINE Alu 1 133 -185 2438 49 3 3 chr13 18909668 18909952 -100834946 + AluY SINE Alu 1 284 -27 275 0 0 28 chr13 18909963 18909999 -100834899 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2004 105 7 56 chr13 18910061 18910366 -100834532 + AluSq SINE Alu 1 290 -23 2318 109 0 10 chr13 18910760 18911073 -100833825 + AluY SINE Alu 2 311 0 306 366 6 0 chr13 18911370 18911534 -100833364 + (TGG)n Simple_repeat Simple_repeat 1 165 0 183 326 31 0 chr13 18912306 18912404 -100832494 - MIR SINE MIR -56 206 106 2224 183 25 27 chr13 18912460 18912594 -100832304 + L1MB3 LINE L1 5696 5829 -354 2159 118 0 29 chr13 18912594 18912909 -100831989 + AluSg SINE Alu 1 306 -4 2008 121 37 0 chr13 18912916 18913214 -100831684 + AluSx SINE Alu 2 310 -2 2224 183 25 27 chr13 18913214 18913558 -100831340 + L1MB3 LINE L1 5835 6181 -2 2315 77 0 7 chr13 18914155 18914453 -100830445 - AluY SINE Alu -15 296 1 187 245 0 0 chr13 18914516 18914565 -100830333 - L2 LINE L2 -9 3304 3256 382 287 68 94 chr13 18914592 18914857 -100830041 - L2 LINE L2 -5 3267 3010 253 73 18 109 chr13 18915016 18915071 -100829827 + LTR67 LTR ERVL 504 553 -4 2194 99 0 3 chr13 18915524 18915817 -100829081 - AluSg1 SINE Alu -17 292 1 1874 119 0 14 chr13 18915890 18916167 -100828731 - AluSx SINE Alu 0 312 40 242 167 0 0 chr13 18916532 18916568 -100828330 + Charlie1 DNA MER1_type 1 36 -2725 1232 190 28 120 chr13 18916580 18916690 -100828208 + Charlie1 DNA MER1_type 2347 2466 -295 2165 115 0 7 chr13 18916690 18916994 -100827904 + AluSx SINE Alu 1 302 -10 1232 190 28 120 chr13 18916994 18917340 -100827558 + Charlie1 DNA MER1_type 2466 2761 0 2145 117 0 3 chr13 18918136 18918427 -100826471 + AluSg1 SINE Alu 1 290 -19 2213 105 0 3 chr13 18918513 18918835 -100826063 - AluSx SINE Alu 0 321 1 464 284 66 51 chr13 18918856 18919250 -100825648 + L1ME4a LINE L1 5649 6048 -73 311 90 0 9 chr13 18919252 18919462 -100825436 - AluSc SINE Alu -6 293 1 208 203 85 17 chr13 18919551 18919610 -100825288 + MIR3 SINE MIR 138 200 -8 2129 99 20 17 chr13 18920944 18921237 -100823661 - AluSx SINE Alu -18 294 1 277 200 25 12 chr13 18921530 18921610 -100823288 - MIR SINE MIR -134 128 48 * 300 252 59 25 chr13 18921603 18921722 -100823176 - MIR SINE MIR -89 173 51 2052 136 0 16 chr13 18921756 18922065 -100822833 + AluJb SINE Alu 6 309 -3 30 0 0 0 chr13 18922065 18922095 -100822803 + AT_rich Low_complexity Low_complexity 1 30 0 2333 65 41 3 chr13 18922097 18922387 -100822511 + AluY SINE Alu 3 303 -8 373 244 28 82 chr13 18922422 18922741 -100822157 - L1ME4a LINE L1 -255 5866 5565 237 189 57 0 chr13 18923343 18923396 -100821502 + MER69 DNA AcHobo 1 56 -121 2175 104 0 27 chr13 18923430 18923727 -100821171 - AluSx SINE Alu -23 289 1 975 200 0 0 chr13 18923727 18923902 -100820996 - AluJo/FRAM SINE Alu -3 309 135 2421 84 0 3 chr13 18923902 18924210 -100820688 - AluY SINE Alu -4 307 1 1571 188 0 7 chr13 18924213 18924485 -100820413 - AluJo SINE Alu -39 273 4 706 274 10 5 chr13 18924577 18924774 -100820124 - L1PB4 LINE L1 -3 6153 5956 1977 186 91 59 chr13 18925120 18925458 -100819440 + MER119 DNA MER1_type 5 331 -252 2168 105 20 13 chr13 18925458 18925762 -100819136 + AluSx SINE Alu 3 308 -4 1977 186 91 59 chr13 18925762 18925773 -100819125 + MER119 DNA MER1_type 331 340 -243 2339 95 0 3 chr13 18925773 18926067 -100818831 + AluSc SINE Alu 1 293 -16 1977 186 91 59 chr13 18926067 18926111 -100818787 + MER119 DNA MER1_type 340 381 -202 2456 71 0 10 chr13 18926111 18926420 -100818478 + AluSg SINE Alu 1 306 -4 1977 186 91 59 chr13 18926420 18926582 -100818316 + MER119 DNA MER1_type 381 580 -3 21 0 0 0 chr13 18926794 18926815 -100818083 + AT_rich Low_complexity Low_complexity 1 21 0 2030 121 0 4 chr13 18926815 18927095 -100817803 + AluSx SINE Alu 1 279 -33 2042 103 0 0 chr13 18927095 18927366 -100817532 + AluSq SINE Alu 39 310 -3 2292 73 0 0 chr13 18927386 18927729 -100817169 + AluY SINE Alu 10 352 0 543 277 74 25 chr13 18927793 18927995 -100816903 - MIR SINE MIR -2 260 49 2148 145 0 0 chr13 18928035 18928346 -100816552 - AluSx SINE Alu -1 311 1 1055 158 0 0 chr13 18928374 18928532 -100816366 - FRAM SINE Alu -18 158 1 2130 104 14 0 chr13 18928558 18928857 -100816041 + AluSx SINE Alu 1 303 0 2285 123 0 0 chr13 18928860 18929169 -100815729 + AluSq SINE Alu 1 309 -4 2156 135 0 13 chr13 18929170 18929482 -100815416 + AluSx SINE Alu 1 308 -4 4898 74 18 50 chr13 18929482 18929778 -100815120 + L1PA11 LINE L1 5490 5794 -380 2321 101 3 19 chr13 18929778 18930096 -100814802 + AluSp SINE Alu 1 313 0 4898 74 18 50 chr13 18930096 18930504 -100814394 + L1PA11 LINE L1 5794 6172 -2 2134 131 0 0 chr13 18930780 18931070 -100813828 + AluSx SINE Alu 5 294 -18 2226 102 0 0 chr13 18931074 18931387 -100813511 + AluSx SINE Alu 1 313 0 1986 146 0 14 chr13 18931440 18931727 -100813171 + AluJo SINE Alu 1 283 -29 259 125 152 18 chr13 18931899 18932011 -100812887 + (TTAAA)n Simple_repeat Simple_repeat 1 127 0 1650 139 25 86 chr13 18932338 18932475 -100812423 + AluJb SINE Alu 1 145 -167 2006 141 0 7 chr13 18932475 18932773 -100812125 + AluSc SINE Alu 1 296 -13 1650 139 25 86 chr13 18932773 18932959 -100811939 + AluJb SINE Alu 145 304 -8 2189 80 42 11 chr13 18932981 18933268 -100811630 - AluSp SINE Alu -17 296 1 1484 185 62 14 chr13 18933277 18933553 -100811345 - AluJo SINE Alu -23 289 1 1723 155 11 90 chr13 18933676 18934043 -100810855 + LTR9 LTR ERV1 1 338 -274 274 209 11 128 chr13 18934080 18934118 -100810780 + LTR9 LTR ERV1 347 388 -224 2325 87 0 0 chr13 18934118 18934405 -100810493 - AluSg SINE Alu -23 287 1 274 209 11 128 chr13 18934405 18934475 -100810423 + LTR9 LTR ERV1 388 438 -174 2433 88 0 3 chr13 18934729 18935035 -100809863 - AluSg SINE Alu 0 310 6 2498 77 0 3 chr13 18935086 18935396 -100809502 + AluY SINE Alu 1 309 -2 658 153 0 0 chr13 18935405 18935503 -100809395 - FRAM SINE Alu -37 139 42 2633 142 42 35 chr13 18935503 18935744 -100809154 + L1MB8 LINE L1 5649 5887 -291 1975 129 3 3 chr13 18935744 18936030 -100808868 + AluSx SINE Alu 5 290 -22 2633 142 42 35 chr13 18936030 18936309 -100808589 + L1MB8 LINE L1 5887 6173 -5 928 193 56 9 chr13 18936098 18936311 -100808587 + L1MB7 LINE L1 5955 6177 -7 841 171 0 34 chr13 18936313 18936459 -100808439 + AluJo SINE Alu 1 141 -171 2098 145 3 3 chr13 18936459 18936769 -100808129 + AluSx SINE Alu 1 310 -2 222 0 0 33 chr13 18936956 18936986 -100807912 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1797 154 11 4 chr13 18936986 18937265 -100807633 - AluJb SINE Alu -1 311 2 434 192 10 39 chr13 18938012 18938116 -100806782 + MER31A LTR ERV1 353 453 -32 435 223 194 23 chr13 18938783 18938951 -100805947 - MIR SINE MIR -16 246 41 2042 120 7 7 chr13 18941644 18941936 -100802962 + AluSx SINE Alu 1 292 -20 326 259 96 22 chr13 18943412 18943547 -100801351 - L1ME4a LINE L1 -45 6076 5932 26 64 0 0 chr13 18944962 18945009 -100799889 + AT_rich Low_complexity Low_complexity 1 47 0 263 276 95 48 chr13 18945062 18945167 -100799731 + MIR SINE MIR 38 147 -61 2209 117 0 0 chr13 18946578 18946868 -100798030 + AluSx SINE Alu 1 290 -22 438 250 132 7 chr13 18947048 18947184 -100797714 - MIR SINE MIR -108 154 2 1470 198 59 7 chr13 18947252 18947540 -100797358 + AluJo SINE Alu 1 303 -9 1655 186 26 10 chr13 18948187 18948493 -100796405 + AluJb SINE Alu 1 311 -1 207 193 23 45 chr13 18949324 18949412 -100795486 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chr13 18949602 18949631 -100795267 + AT_rich Low_complexity Low_complexity 1 29 0 1855 139 16 32 chr13 18949804 18950114 -100794784 + AluJb SINE Alu 1 305 -7 541 187 41 57 chr13 18950125 18950248 -100794650 + FRAM SINE Alu 2 122 -54 920 176 29 29 chr13 18950476 18950681 -100794217 - MER3 DNA MER1_type -3 206 2 320 300 25 0 chr13 18950747 18950867 -100794031 + L1ME1 LINE L1 6039 6161 -5 25 75 0 0 chr13 18951800 18951853 -100793045 + AT_rich Low_complexity Low_complexity 1 53 0 2285 102 3 3 chr13 18951935 18952239 -100792659 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr13 18952344 18952373 -100792525 + AT_rich Low_complexity Low_complexity 1 29 0 654 271 134 4 chr13 18952634 18952861 -100792037 + MIR SINE MIR 6 256 -6 348 269 32 0 chr13 18953360 18953453 -100791445 - MER94 DNA DNA -15 119 24 197 274 0 95 chr13 18953709 18953793 -100791105 + L2 LINE L2 3197 3272 0 376 234 183 77 chr13 18954077 18954208 -100790690 - MIR SINE MIR 0 262 146 2452 64 0 0 chr13 18954208 18954506 -100790392 + AluY SINE Alu 1 298 -13 376 234 183 77 chr13 18954506 18954609 -100790289 - MIR SINE MIR -116 146 3 244 210 371 7 chr13 18954770 18954913 -100789985 + L1MC4 LINE L1 7466 7660 -382 354 261 54 8 chr13 18955114 18955244 -100789654 + L1MC4 LINE L1 7817 7952 -90 267 211 0 0 chr13 18955274 18955326 -100789572 + FAM SINE Alu 116 167 -12 2221 118 0 3 chr13 18955352 18955657 -100789241 + AluSg SINE Alu 1 304 -6 345 100 0 0 chr13 18955662 18955712 -100789186 + (TA)n Simple_repeat Simple_repeat 2 51 0 742 165 0 31 chr13 18955812 18955939 -100788959 + FLAM_C SINE Alu 1 123 -10 2233 93 6 19 chr13 18955949 18956081 -100788817 + AluSc SINE Alu 1 133 -176 2361 97 0 0 chr13 18956081 18956390 -100788508 + AluY SINE Alu 1 309 -2 2233 93 6 19 chr13 18956390 18956568 -100788330 + AluSc SINE Alu 133 307 -2 358 255 121 13 chr13 18956836 18956985 -100787913 - MIR SINE MIR -21 241 77 21 57 0 0 chr13 18957086 18957121 -100787777 + AT_rich Low_complexity Low_complexity 1 35 0 2202 144 0 0 chr13 18958052 18958358 -100786540 - AluSx SINE Alu -6 306 1 2259 115 0 10 chr13 18958533 18958845 -100786053 - AluSc SINE Alu 0 309 1 802 154 22 7 chr13 18959244 18959380 -100785518 - FLAM_C SINE Alu -1 142 5 29 0 0 0 chr13 18959899 18959928 -100784970 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 18960899 18960928 -100783970 + AT_rich Low_complexity Low_complexity 1 29 0 244 374 40 0 chr13 18961231 18961330 -100783568 - MIR3 SINE MIR -34 174 72 2339 101 7 0 chr13 18961898 18962195 -100782703 - AluSp SINE Alu -14 299 1 202 219 27 27 chr13 18963013 18963086 -100781812 + A-rich Low_complexity Low_complexity 5 77 0 246 196 61 20 chr13 18964238 18964334 -100780564 - MIR SINE MIR -72 136 81 21 0 0 0 chr13 18965321 18965342 -100779556 + AT_rich Low_complexity Low_complexity 1 21 0 249 100 0 0 chr13 18966407 18966447 -100778451 + Alu SINE Alu 94 133 -169 198 71 0 0 chr13 18967164 18967192 -100777706 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 2458 78 7 0 chr13 18967395 18967704 -100777194 - AluY SINE Alu 0 311 1 2032 146 0 0 chr13 18967865 18968159 -100776739 - AluJb SINE Alu -10 302 9 234 176 39 0 chr13 18968539 18968590 -100776308 - Charlie1 DNA MER1_type 0 2761 2709 1010 108 0 0 chr13 18968981 18969111 -100775787 + AluSx SINE Alu 1 130 -182 1075 139 48 0 chr13 18969176 18969341 -100775557 + AluSx SINE Alu 129 301 -11 243 0 0 0 chr13 18970433 18970460 -100774438 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 260 49 49 0 chr13 18970618 18970659 -100774239 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2187 110 0 0 chr13 18970661 18970943 -100773955 - AluSg SINE Alu -28 282 1 771 108 0 18 chr13 18970968 18971079 -100773819 - AluSq/x SINE Alu -202 110 2 2002 130 13 0 chr13 18971369 18971669 -100773229 - AluSq SINE Alu -9 304 1 2441 86 0 0 chr13 18971825 18972126 -100772772 + AluSx SINE Alu 1 301 -11 266 181 213 31 chr13 18972237 18972397 -100772501 - Charlie1 DNA MER1_type -49 2712 2524 2197 100 0 13 chr13 18972400 18972699 -100772199 + AluSq SINE Alu 1 295 -18 1394 151 19 31 chr13 18972758 18972930 -100771968 - AluJo SINE Alu -1 311 141 288 0 0 0 chr13 18972930 18972962 -100771936 + (TA)n Simple_repeat Simple_repeat 2 33 0 1394 151 19 31 chr13 18972962 18973047 -100771851 - AluJo SINE Alu -171 141 57 356 227 52 0 chr13 18973245 18973342 -100771556 - U13 snRNA snRNA -2 102 1 2860 182 51 49 chr13 18973411 18974282 -100770616 - L1MDa LINE L1 -4363 2177 1302 1553 146 18 18 chr13 18974282 18974556 -100770342 - AluSp SINE Alu -18 295 22 2000 142 23 3 chr13 18974699 18975001 -100769897 + AluSx SINE Alu 1 308 -4 294 262 39 0 chr13 18975001 18975104 -100769794 - MER87 LTR ERV1 -40 501 395 1230 183 19 23 chr13 18975119 18975382 -100769516 - LTR38 LTR ERV1 -161 395 134 800 102 0 70 chr13 18975499 18975627 -100769271 + FRAM SINE Alu 54 172 -4 2408 240 158 42 chr13 18975628 18976745 -100768153 - L1MDa LINE L1 -5220 1320 19 2013 134 30 0 chr13 18976799 18977097 -100767801 + AluSx SINE Alu 1 307 -5 2103 104 0 10 chr13 18977097 18977385 -100767513 + AluSg SINE Alu 1 285 -25 180 0 0 0 chr13 18977385 18977405 -100767493 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 536 188 10 0 chr13 18977411 18977507 -100767391 - MER3 DNA MER1_type -71 138 42 1140 196 113 48 chr13 18977809 18978145 -100766753 - MLT1A1 LTR MaLR 0 365 8 433 252 44 7 chr13 18978221 18978356 -100766542 - MER117 DNA MER1_type -57 140 1 181 270 162 40 chr13 18978561 18978615 -100766283 + MIR SINE MIR 19 86 -122 1232 139 16 84 chr13 18978615 18978652 -100766246 - MER46A DNA MER2_type -2495 236 198 1938 133 19 16 chr13 18978652 18978961 -100765937 + AluSx SINE Alu 1 310 -2 1232 139 16 84 chr13 18978961 18979174 -100765724 - MER46A DNA MER2_type -2533 198 3 181 270 162 40 chr13 18979174 18979193 -100765705 + MIR SINE MIR 86 101 -107 32 26 0 0 chr13 18979407 18979446 -100765452 + AT_rich Low_complexity Low_complexity 1 39 0 263 271 169 26 chr13 18979473 18979634 -100765264 - HAL1 LINE L1 -69 2438 2301 2575 48 0 10 chr13 18979634 18979944 -100764954 - AluY SINE Alu -4 307 1 263 271 169 26 chr13 18979944 18980125 -100764773 - HAL1 LINE L1 -206 2301 2047 2083 110 3 17 chr13 18980145 18980446 -100764452 - AluSp SINE Alu -16 297 1 240 33 0 0 chr13 18981405 18981435 -100763463 + LTR6A LTR ERV1 73 102 -462 283 278 11 0 chr13 18981615 18981705 -100763193 - HAL1 LINE L1 -615 1892 1802 1111 253 108 65 chr13 18981767 18982277 -100762621 - HAL1 LINE L1 -846 1661 1103 2495 61 3 6 chr13 18982277 18982589 -100762309 - AluY SINE Alu 0 311 1 1111 253 108 65 chr13 18982589 18982878 -100762020 - HAL1 LINE L1 -1404 1103 828 1169 126 6 6 chr13 18982880 18983043 -100761855 - AluSg/x SINE Alu -15 295 130 2335 93 3 3 chr13 18983043 18983345 -100761553 - AluSq SINE Alu -11 302 1 1169 126 6 6 chr13 18983345 18983356 -100761542 - AluSg/x SINE Alu -179 131 121 566 170 64 7 chr13 18983359 18983500 -100761398 - L1MB8 LINE L1 -5 6173 6025 25 31 0 0 chr13 18983512 18983544 -100761354 + AT_rich Low_complexity Low_complexity 1 32 0 2088 88 18 7 chr13 18983551 18983835 -100761063 - AluY SINE Alu -24 287 1 1227 143 12 12 chr13 18983889 18984134 -100760764 + L1M4 LINE L1 5255 5499 -675 1340 155 5 9 chr13 18984137 18984350 -100760548 + AluSx SINE Alu 1 212 -100 412 107 0 0 chr13 18984350 18984406 -100760492 + AluSg/x SINE Alu 76 131 -179 1016 110 0 0 chr13 18984510 18984646 -100760252 + AluSg/x SINE Alu 162 297 -13 2209 128 63 101 chr13 18984663 18984757 -100760141 - L1MB8 LINE L1 -170 6008 5912 2163 120 0 0 chr13 18984757 18985057 -100759841 - AluSx SINE Alu -12 300 1 2209 128 63 101 chr13 18985057 18985486 -100759412 - L1MB8 LINE L1 -266 5912 5505 1154 101 0 0 chr13 18985486 18985497 -100759401 - AluSq/x SINE Alu -163 149 139 2241 126 0 3 chr13 18985497 18985807 -100759091 - AluSx SINE Alu -3 309 1 1154 101 0 0 chr13 18985807 18985944 -100758954 - AluSq/x SINE Alu -172 140 1 1237 163 18 19 chr13 18985947 18986259 -100758639 - L1MB8 LINE L1 -675 5499 5190 760 104 0 9 chr13 18986261 18986376 -100758522 - AluSg/x SINE Alu 0 310 197 767 217 166 5 chr13 18986376 18986593 -100758305 + HAL1 LINE L1 1486 1737 -770 980 106 8 0 chr13 18986667 18986799 -100758099 - FLAM_C SINE Alu 0 133 1 595 111 56 0 chr13 18987048 18987138 -100757760 - AluSg/x SINE Alu -14 295 201 2041 102 4 0 chr13 18987141 18987406 -100757492 + AluSp SINE Alu 47 312 -1 260 229 110 37 chr13 18987427 18987536 -100757362 + HAL1 LINE L1 1729 1845 -662 392 254 0 87 chr13 18987611 18987709 -100757189 + HAL1 LINE L1 2159 2235 -272 1569 166 0 67 chr13 18987709 18988022 -100756876 + AluJb SINE Alu 1 292 -20 392 254 0 87 chr13 18988022 18988108 -100756790 + HAL1 LINE L1 2235 2327 -180 659 236 85 43 chr13 18988113 18988232 -100756666 - L1M4 LINE L1 -883 5263 5151 2387 85 7 3 chr13 18988232 18988539 -100756359 - AluSc SINE Alu -1 308 1 659 236 85 43 chr13 18988539 18988677 -100756221 - L1M4 LINE L1 -995 5151 4995 2246 102 0 20 chr13 18988921 18989224 -100755674 + AluSx SINE Alu 1 297 -15 199 305 102 8 chr13 18990270 18990338 -100754560 + MIR SINE MIR 79 139 -123 1346 158 17 70 chr13 18990338 18990636 -100754262 + AluJo SINE Alu 1 282 -30 357 24 0 0 chr13 18990637 18990679 -100754219 + (GA)n Simple_repeat Simple_repeat 1 42 0 199 305 102 8 chr13 18990679 18990736 -100754162 + MIR SINE MIR 138 218 -44 303 318 85 0 chr13 18991073 18991202 -100753696 + L2 LINE L2 3133 3272 0 2041 129 4 0 chr13 18991278 18991557 -100753341 + AluSg SINE Alu 1 280 -30 382 79 32 0 chr13 18991559 18991622 -100753276 + (TA)n Simple_repeat Simple_repeat 2 66 0 442 295 13 13 chr13 18991624 18991780 -100753118 + MIR SINE MIR 103 258 -4 2329 81 0 14 chr13 18991780 18992075 -100752823 + AluSg SINE Alu 1 291 -19 268 257 57 57 chr13 18992098 18992238 -100752660 + MIR3 SINE MIR 69 208 0 2493 115 37 91 chr13 18992246 18992732 -100752166 + L1MB2 LINE L1 5671 6130 -41 1131 68 0 0 chr13 18992732 18992865 -100752033 + AluYb8 SINE Alu 1 133 -185 2438 49 3 3 chr13 18992866 18993150 -100751748 + AluY SINE Alu 1 284 -27 275 0 0 28 chr13 18993161 18993197 -100751701 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2004 105 7 56 chr13 18993259 18993564 -100751334 + AluSq SINE Alu 1 290 -23 2318 109 0 10 chr13 18993958 18994271 -100750627 + AluY SINE Alu 2 311 0 306 366 6 0 chr13 18994568 18994732 -100750166 + (TGG)n Simple_repeat Simple_repeat 1 165 0 183 326 31 0 chr13 18995504 18995602 -100749296 - MIR SINE MIR -56 206 106 2224 183 25 27 chr13 18995658 18995792 -100749106 + L1MB3 LINE L1 5696 5829 -354 2159 118 0 29 chr13 18995792 18996107 -100748791 + AluSg SINE Alu 1 306 -4 2008 121 37 0 chr13 18996114 18996412 -100748486 + AluSx SINE Alu 2 310 -2 2224 183 25 27 chr13 18996412 18996756 -100748142 + L1MB3 LINE L1 5835 6181 -2 2315 77 0 7 chr13 18997353 18997651 -100747247 - AluY SINE Alu -15 296 1 187 245 0 0 chr13 18997714 18997763 -100747135 - L2 LINE L2 -9 3304 3256 382 287 68 94 chr13 18997790 18998055 -100746843 - L2 LINE L2 -5 3267 3010 253 73 18 109 chr13 18998214 18998269 -100746629 + LTR67 LTR ERVL 504 553 -4 2194 99 0 3 chr13 18998722 18999015 -100745883 - AluSg1 SINE Alu -17 292 1 1909 111 0 25 chr13 18999087 18999367 -100745531 - AluSx SINE Alu 0 312 40 242 167 0 0 chr13 18999732 18999768 -100745130 + Charlie1 DNA MER1_type 1 36 -2725 1232 190 28 120 chr13 18999780 18999890 -100745008 + Charlie1 DNA MER1_type 2347 2466 -295 2165 115 0 7 chr13 18999890 19000194 -100744704 + AluSx SINE Alu 1 302 -10 1232 190 28 120 chr13 19000194 19000540 -100744358 + Charlie1 DNA MER1_type 2466 2761 0 2155 115 6 19 chr13 19001336 19001649 -100743249 + AluSx SINE Alu 1 309 -3 2796 167 44 175 chr13 19001649 19002160 -100742738 - L1MB2 LINE L1 -134 6037 5461 2141 118 0 32 chr13 19002160 19002474 -100742424 - AluSx SINE Alu -8 304 1 2796 167 44 175 chr13 19002474 19002589 -100742309 - L1MB2 LINE L1 -710 5461 5333 279 241 0 0 chr13 19002589 19002647 -100742251 - AluYa5 SINE Alu -109 192 135 2796 167 44 175 chr13 19002647 19002762 -100742136 - L1MB2 LINE L1 -838 5333 5205 1458 150 117 36 chr13 19002762 19003036 -100741862 - AluSg SINE Alu -14 296 1 2013 126 0 46 chr13 19003046 19003348 -100741550 - AluJb SINE Alu -24 288 1 2796 167 44 175 chr13 19003348 19003418 -100741480 - L1MB2 LINE L1 -835 5336 5258 3226 168 66 45 chr13 19003570 19003670 -100741228 - L1MB2 LINE L1 -44 6127 6031 2284 96 0 19 chr13 19003670 19003983 -100740915 + AluSg SINE Alu 1 307 -3 3226 168 66 45 chr13 19003983 19004494 -100740404 - L1MB2 LINE L1 -140 6031 5498 2141 118 0 32 chr13 19004494 19004808 -100740090 - AluSx SINE Alu -8 304 1 3226 168 66 45 chr13 19004808 19004880 -100740018 - L1MB2 LINE L1 -673 5498 5429 27 0 0 0 chr13 19004881 19004908 -100739990 + AT_rich Low_complexity Low_complexity 1 27 0 279 241 0 0 chr13 19004923 19004981 -100739917 - AluYa5 SINE Alu -109 192 135 7099 185 54 44 chr13 19004982 19005096 -100739802 - L1M3 LINE L1 -745 5401 5290 1441 153 117 36 chr13 19005096 19005370 -100739528 - AluSg SINE Alu -14 296 1 2026 126 0 46 chr13 19005380 19005682 -100739216 - AluJb SINE Alu -24 288 1 7099 185 54 44 chr13 19005682 19006156 -100738742 - L1M3 LINE L1 -864 5282 4814 2424 47 7 13 chr13 19006156 19006457 -100738441 + AluY SINE Alu 2 300 -11 7099 185 54 44 chr13 19006457 19006870 -100738028 - L1M3 LINE L1 -1332 4814 4406 2492 33 40 10 chr13 19006870 19007171 -100737727 - AluY SINE Alu -1 310 1 7099 185 54 44 chr13 19007171 19007376 -100737522 - L1M3 LINE L1 -1740 4406 4204 2388 99 0 0 chr13 19007376 19007670 -100737228 + AluSq SINE Alu 1 294 -19 7099 185 54 44 chr13 19007670 19008287 -100736611 - L1M3 LINE L1 -1942 4204 3562 2369 106 0 0 chr13 19008314 19008626 -100736272 - AluSx SINE Alu 0 312 1 2274 105 0 3 chr13 19008631 19008935 -100735963 - AluY SINE Alu -8 303 1 1909 172 0 0 chr13 19008935 19009232 -100735666 - AluJb SINE Alu -14 298 2 1804 136 63 11 chr13 19009243 19009530 -100735368 - AluSg SINE Alu -4 306 5 763 208 65 4 chr13 19009540 19009785 -100735113 - L1M3 LINE L1 -2878 3268 3009 2734 124 12 23 chr13 19009799 19010227 -100734671 - LTR3 LTR ERVK -9 423 1 739 154 7 0 chr13 19010234 19010377 -100734521 - L1M3 LINE L1 -3138 3008 2865 2397 91 0 10 chr13 19010419 19010726 -100734172 - AluSx SINE Alu -8 304 1 264 172 0 0 chr13 19010740 19010798 -100734100 + A-rich Low_complexity Low_complexity 1 58 0 1809 125 59 7 chr13 19011436 19011724 -100733174 + AluSx SINE Alu 1 303 -9 1978 127 0 20 chr13 19011763 19012062 -100732836 + AluSx SINE Alu 5 297 -15 1875 127 76 0 chr13 19012082 19012357 -100732541 + AluSx SINE Alu 1 296 -16 1876 166 17 0 chr13 19012420 19012721 -100732177 - AluJb SINE Alu -6 306 1 654 201 174 0 chr13 19012782 19012931 -100731967 - AluSg/x SINE Alu 0 312 138 1102 177 5 0 chr13 19012933 19013119 -100731779 - AluJo SINE Alu -12 300 114 243 162 0 0 chr13 19013123 19013160 -100731738 + Alu SINE Alu 6 42 -259 198 245 41 0 chr13 19014112 19014161 -100730737 - MIR SINE MIR 0 262 212 809 200 35 0 chr13 19014225 19014395 -100730503 - MIR SINE MIR -70 192 17 327 292 102 0 chr13 19014993 19015130 -100729768 - L2 LINE L2 -8 3305 3155 1160 130 12 0 chr13 19015253 19015415 -100729483 - AluSg/x SINE Alu -19 291 128 561 283 88 4 chr13 19015486 19015712 -100729186 - MIR SINE MIR -2 260 16 1607 187 67 54 chr13 19016001 19016325 -100728573 + MSTD LTR MaLR 1 332 -64 2302 86 3 3 chr13 19016325 19016617 -100728281 + AluSx SINE Alu 1 292 -20 1607 187 67 54 chr13 19016617 19016683 -100728215 + MSTD LTR MaLR 332 396 0 182 298 0 18 chr13 19017335 19017392 -100727506 + MIR SINE MIR 37 92 -116 289 270 190 45 chr13 19017453 19017581 -100727317 + L1ME3 LINE L1 4561 4669 -1477 2095 119 6 44 chr13 19017581 19017901 -100726997 + AluSq SINE Alu 1 308 -5 289 270 190 45 chr13 19017901 19018257 -100726641 + L1ME3 LINE L1 4669 5115 -1031 2166 106 228 6 chr13 19018358 19018718 -100726180 - LTR12 LTR ERV1 -234 480 41 246 143 0 0 chr13 19018718 19018760 -100726138 - LTR30 LTR ERV1 -680 42 1 435 252 102 82 chr13 19018802 19018847 -100726051 + L1ME3 LINE L1 5258 5301 -863 747 289 65 59 chr13 19018847 19019353 -100725545 + MLT1J LTR MaLR 1 509 -2 435 252 102 82 chr13 19019353 19019541 -100725357 + L1ME3 LINE L1 5301 5484 -680 1415 177 130 0 chr13 19019541 19019795 -100725103 + AluSx SINE Alu 5 291 -21 435 252 102 82 chr13 19019795 19020227 -100724671 + L1ME3 LINE L1 5484 5939 -225 412 292 116 52 chr13 19020524 19020887 -100724011 + L1MEd LINE L1 88 473 -5732 251 227 163 23 chr13 19021136 19021308 -100723590 + L1MEd LINE L1 727 922 -5283 * 3393 167 86 63 chr13 19021304 19021768 -100723130 + L1MB3 LINE L1 5121 5573 -610 2478 73 0 3 chr13 19021768 19022071 -100722827 + AluSg SINE Alu 4 305 -5 3393 167 86 63 chr13 19022071 19022292 -100722606 + L1MB3 LINE L1 5573 5787 -396 1903 156 0 3 chr13 19022292 19022587 -100722311 + AluJb SINE Alu 5 298 -14 3393 167 86 63 chr13 19022587 19022860 -100722038 + L1MB3 LINE L1 5787 6099 -84 2359 88 0 7 chr13 19022888 19023183 -100721715 - AluY SINE Alu -18 293 1 334 229 73 37 chr13 19023266 19023375 -100721523 + L1ME3 LINE L1 6047 6159 -3 2245 131 0 6 chr13 19023439 19023753 -100721145 + AluSx SINE Alu 1 312 0 1953 157 130 3 chr13 19023824 19024200 -100720698 - MSTB LTR MaLR -2 424 1 2133 119 7 0 chr13 19024219 19024514 -100720384 + AluSq SINE Alu 1 297 -16 239 276 0 26 chr13 19024541 19024617 -100720281 + LTR33 LTR ERVL 41 114 -407 367 195 87 60 chr13 19024710 19024859 -100720039 + LTR33 LTR ERVL 369 521 0 580 286 83 25 chr13 19024927 19025326 -100719572 + L1MEd LINE L1 1317 1738 -4658 2324 91 7 0 chr13 19025381 19025679 -100719219 - AluSp SINE Alu -13 300 1 1385 179 31 45 chr13 19025706 19025997 -100718901 + AluJb SINE Alu 1 287 -25 360 119 0 0 chr13 19025999 19026058 -100718840 + (CAATC)n Simple_repeat Simple_repeat 2 60 0 1570 175 4 15 chr13 19026058 19026326 -100718572 - AluJb SINE Alu -47 265 1 693 215 0 15 chr13 19026350 19026485 -100718413 + FRAM SINE Alu 34 166 -10 2104 82 50 7 chr13 19026555 19026863 -100718035 - AluSp SINE Alu 0 313 1 351 283 66 11 chr13 19026935 19027270 -100717628 + L1MEd LINE L1 2033 2360 -3855 684 200 0 0 chr13 19027278 19027393 -100717505 + FLAM_C SINE Alu 9 123 -20 305 322 54 20 chr13 19027726 19027875 -100717023 + L1MEd LINE L1 2746 2899 -3316 305 186 186 85 chr13 19027899 19027945 -100716953 + L1MEd LINE L1 3201 3241 -2974 1919 139 10 10 chr13 19027945 19028246 -100716652 + AluSx SINE Alu 1 301 -11 305 186 186 85 chr13 19028246 19028398 -100716500 + L1MEd LINE L1 3241 3419 -2796 2382 86 13 0 chr13 19028406 19028708 -100716190 + AluSp SINE Alu 1 306 -7 332 272 28 67 chr13 19028746 19028926 -100715972 + L1MEd LINE L1 3646 3818 -2397 642 110 42 68 chr13 19028936 19029054 -100715844 + L1MA7 LINE L1 6174 6288 -3 2043 140 6 19 chr13 19029187 19029501 -100715397 + AluSx SINE Alu 1 310 -2 2187 121 0 13 chr13 19029503 19029808 -100715090 + AluSq SINE Alu 1 301 -12 1240 177 55 52 chr13 19029808 19029967 -100714931 + Looper DNA T2_type 341 503 -1055 1615 184 3 33 chr13 19029967 19030271 -100714627 - AluJb SINE Alu -17 295 1 1240 177 55 52 chr13 19030271 19030421 -100714477 + Looper DNA T2_type 503 651 -907 2255 82 7 33 chr13 19030422 19030726 -100714172 - AluSq SINE Alu -16 297 2 645 247 129 0 chr13 19030742 19030912 -100713986 - MER3 DNA MER1_type -1 208 17 2339 203 78 19 chr13 19030928 19031009 -100713889 + Looper DNA T2_type 662 737 -821 1086 200 43 0 chr13 19031009 19031219 -100713679 + MER20 DNA MER1_type 1 219 0 2339 203 78 19 chr13 19031219 19031703 -100713195 + Looper DNA T2_type 737 1260 -298 375 115 77 115 chr13 19031697 19031781 -100713117 + Looper DNA T2_type 1166 1247 -311 * 1957 163 0 3 chr13 19031781 19032087 -100712811 + AluJo SINE Alu 1 305 -7 375 115 77 115 chr13 19032087 19032106 -100712792 + Looper DNA T2_type 1247 1265 -293 1929 155 3 3 chr13 19032131 19032434 -100712464 + AluJb SINE Alu 1 303 -9 2193 105 3 40 chr13 19032440 19032765 -100712133 + AluSp SINE Alu 1 313 0 226 178 44 0 chr13 19032781 19032826 -100712072 + MER3 DNA MER1_type 41 87 -122 * 530 250 16 0 chr13 19032818 19032942 -100711956 - MER3 DNA MER1_type -82 127 2 417 235 8 53 chr13 19033042 19033174 -100711724 - MIR SINE MIR 0 262 137 2186 111 3 3 chr13 19033195 19033493 -100711405 + AluSx SINE Alu 1 298 -14 414 221 93 0 chr13 19033493 19033579 -100711319 - FLAM_A SINE Alu -20 113 20 404 111 79 0 chr13 19033630 19033723 -100711175 - AluSp/q SINE Alu 0 317 220 1980 104 0 4 chr13 19033752 19034003 -100710895 - AluSx SINE Alu -62 250 1 247 323 81 0 chr13 19034122 19034246 -100710652 - L2 LINE L2 -5 3267 3134 1183 157 63 22 chr13 19034295 19034518 -100710380 + AluJo SINE Alu 79 310 -2 287 296 139 12 chr13 19034565 19034737 -100710161 - L2 LINE L2 -213 3059 2866 713 150 8 24 chr13 19034806 19034933 -100709965 + MER45R DNA AcHobo 1457 1581 0 1971 93 12 99 chr13 19035073 19035405 -100709493 + AluSg SINE Alu 1 303 -7 2340 89 10 0 chr13 19035455 19035757 -100709141 - AluSp SINE Alu -8 305 1 2352 88 0 10 chr13 19036174 19036479 -100708419 + AluSq SINE Alu 1 302 -11 2144 136 0 0 chr13 19036511 19036812 -100708086 + AluSx SINE Alu 1 301 -11 2208 128 0 0 chr13 19036965 19037262 -100707636 + AluSx SINE Alu 1 297 -15 390 258 132 33 chr13 19037443 19037656 -100707242 - L1ME LINE L1 -297 5824 5591 340 320 98 40 chr13 19037905 19038377 -100706521 - L1ME LINE L1 -1539 4607 4109 342 230 30 22 chr13 19038450 19038585 -100706313 - L1ME LINE L1 -2146 4000 3865 237 323 0 50 chr13 19039010 19039109 -100705789 + L2 LINE L2 2981 3074 -198 209 284 0 118 chr13 19039302 19039357 -100705541 + MIR SINE MIR 76 110 -152 1947 121 25 18 chr13 19039357 19039667 -100705231 - AluSx SINE Alu 0 312 1 209 284 0 118 chr13 19039667 19039737 -100705161 + MIR SINE MIR 110 187 -75 2095 126 17 3 chr13 19039896 19040197 -100704701 + AluSq SINE Alu 1 305 -8 295 262 0 0 chr13 19040446 19040507 -100704391 - MER2 DNA MER2_type -212 133 73 478 140 68 33 chr13 19040510 19040718 -100704180 + AluJo SINE Alu 3 290 -22 323 221 0 93 chr13 19040732 19040818 -100704080 - MER2 DNA MER2_type -267 78 1 410 212 17 51 chr13 19040995 19041113 -100703785 + MIR SINE MIR 35 148 -60 589 233 69 80 chr13 19041573 19041720 -100703178 + MIR SINE MIR 2 146 -116 2309 83 10 0 chr13 19041720 19042009 -100702889 + AluSg SINE Alu 2 293 -17 589 233 69 80 chr13 19042009 19042123 -100702775 + MIR SINE MIR 146 260 -2 2110 130 3 0 chr13 19042227 19042526 -100702372 - AluSx SINE Alu -12 300 1 246 277 18 62 chr13 19042620 19042738 -100702160 + MIR SINE MIR 2 110 -104 27 62 0 0 chr13 19044543 19044591 -100700307 + GC_rich Low_complexity Low_complexity 1 48 0 2491 77 0 0 chr13 19044960 19045271 -100699627 - AluSx SINE Alu -1 311 1 1622 156 33 10 chr13 19045495 19045796 -100699102 + AluJb SINE Alu 1 308 -4 193 313 24 24 chr13 19045824 19045907 -100698991 - L3 LINE CR1 -22 1555 1473 180 247 56 79 chr13 19045972 19046061 -100698837 - L3 LINE CR1 -211 1366 1280 462 18 0 0 chr13 19046159 19046214 -100698684 + (TG)n Simple_repeat Simple_repeat 2 56 0 2110 115 4 0 chr13 19046215 19046493 -100698405 - AluSx SINE Alu -33 279 1 271 224 0 0 chr13 19046678 19046727 -100698171 + L2 LINE L2 3210 3258 -14 2216 94 3 39 chr13 19046945 19047253 -100697645 + AluSp SINE Alu 1 297 -16 2133 122 26 0 chr13 19047253 19047556 -100697342 + AluSx SINE Alu 1 311 -1 1888 150 0 23 chr13 19047561 19047867 -100697031 + AluJo SINE Alu 5 303 -9 2205 122 7 0 chr13 19047869 19048165 -100696733 + AluSx SINE Alu 1 298 -14 2236 96 36 0 chr13 19048165 19048466 -100696432 + AluSx SINE Alu 1 312 0 180 303 30 45 chr13 19048609 19048675 -100696223 - L3 LINE CR1 -5 1572 1508 1713 162 9 62 chr13 19048764 19048936 -100695962 - AluSx SINE Alu -8 304 124 186 43 0 0 chr13 19048936 19048959 -100695939 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2091 92 3 11 chr13 19048959 19049243 -100695655 - AluSc SINE Alu -27 282 1 2372 85 0 0 chr13 19049252 19049565 -100695333 - AluSq SINE Alu 0 313 1 1713 162 9 62 chr13 19049565 19049701 -100695197 - AluSx SINE Alu -195 117 1 217 224 64 66 chr13 19050193 19050299 -100694599 - MIR SINE MIR -5 203 85 193 336 44 44 chr13 19050323 19050460 -100694438 + MIR SINE MIR 14 150 -112 998 270 145 58 chr13 19050733 19051400 -100693498 + MER21B LTR ERV1 6 730 -133 442 223 9 9 chr13 19051546 19051658 -100693240 - MIR SINE MIR -56 206 95 2448 79 3 0 chr13 19051680 19051984 -100692914 - AluY SINE Alu -4 307 3 396 226 28 0 chr13 19051996 19052102 -100692796 + L1 LINE L1 2768 2876 -3270 264 172 0 0 chr13 19052107 19052165 -100692733 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 19052180 19052487 -100692411 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 19052529 19052672 -100692226 + L1 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 19052679 19053107 -100691791 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 19053121 19053366 -100691532 + L1 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 19053376 19053663 -100691235 + AluSg SINE Alu 5 306 -4 2019 164 0 0 chr13 19053674 19053985 -100690913 + AluJb SINE Alu 2 312 0 2361 81 0 3 chr13 19053985 19054282 -100690616 + AluY SINE Alu 1 296 -15 29 0 0 0 chr13 19054282 19054311 -100690587 + AT_rich Low_complexity Low_complexity 1 29 0 460 102 0 153 chr13 19054311 19054409 -100690489 + AluSq SINE Alu 121 203 -110 993 74 0 0 chr13 19054444 19054566 -100690332 + AluSg/x SINE Alu 181 302 -8 583 214 15 30 chr13 19054601 19054732 -100690166 + FLAM_A SINE Alu 1 129 -4 609 154 164 34 chr13 19054734 19054778 -100690120 + Charlie1 DNA MER1_type 2478 2515 -246 2260 103 0 13 chr13 19054778 19055088 -100689810 - AluSq SINE Alu -7 306 1 609 154 164 34 chr13 19055088 19055251 -100689647 + Charlie1 DNA MER1_type 2515 2712 -49 2466 86 0 0 chr13 19055362 19055663 -100689235 - AluSx SINE Alu -11 301 1 2020 130 13 0 chr13 19055819 19056119 -100688779 + AluSq SINE Alu 1 304 -9 803 111 19 0 chr13 19056412 19056520 -100688378 + AluSq/x SINE Alu 1 110 -203 2208 110 0 0 chr13 19056545 19056870 -100688028 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 19057028 19057055 -100687843 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1078 139 48 0 chr13 19058147 19058312 -100686586 - AluSx SINE Alu -11 299 127 1016 108 0 0 chr13 19058377 19058507 -100686391 - AluSx SINE Alu -182 130 1 254 176 39 0 chr13 19058898 19058949 -100685949 + Charlie1 DNA MER1_type 2709 2761 0 2041 146 0 0 chr13 19059329 19059623 -100685275 + AluJb SINE Alu 9 302 -10 2486 78 7 0 chr13 19059784 19060093 -100684805 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 19060296 19060324 -100684574 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 401 100 0 17 chr13 19061041 19061101 -100683797 - AluSc SINE Alu -178 131 73 2242 113 3 0 chr13 19061286 19061579 -100683319 - AluSx SINE Alu -18 294 1 889 154 0 0 chr13 19061579 19061715 -100683183 - AluSq/x SINE Alu -176 136 1 1640 188 122 26 chr13 19061717 19061759 -100683139 - LTR40c LTR ERVL -19 446 409 2303 114 21 15 chr13 19061759 19062093 -100682805 - MER1B DNA MER1_type -1 336 1 1640 188 122 26 chr13 19062093 19062427 -100682471 - LTR40c LTR ERVL -56 409 34 1017 272 101 8 chr13 19062458 19062833 -100682065 + L1MC4a LINE L1 5569 5978 -1830 2301 113 7 0 chr13 19062956 19063258 -100681640 - AluSx SINE Alu -8 304 1 1954 122 14 10 chr13 19063362 19063650 -100681248 - AluSq SINE Alu -24 289 1 2083 111 0 30 chr13 19063652 19063950 -100680948 - AluSx SINE Alu -23 289 1 189 0 0 0 chr13 19064813 19064834 -100680064 + (TG)n Simple_repeat Simple_repeat 2 22 0 2011 84 0 0 chr13 19066976 19067227 -100677671 - AluSx SINE Alu -6 306 56 1524 180 69 32 chr13 19067624 19068412 -100676486 + L1MB4 LINE L1 5017 5896 -284 1962 134 38 0 chr13 19068412 19068702 -100676196 + AluSq SINE Alu 1 301 -12 1524 180 69 32 chr13 19068702 19068964 -100675934 + L1MB4 LINE L1 5896 6147 -33 298 75 19 0 chr13 19069037 19069090 -100675808 + L1MB4 LINE L1 6127 6180 0 2246 106 0 3 chr13 19069213 19069514 -100675384 - AluSg SINE Alu -10 300 1 1913 156 45 66 chr13 19069873 19070051 -100674847 + Tigger2a DNA MER2_type 1 181 -2527 2084 139 3 3 chr13 19070051 19070361 -100674537 - AluSx SINE Alu -2 310 1 1913 156 45 66 chr13 19070361 19070624 -100674274 + Tigger2a DNA MER2_type 181 433 -1 29 60 0 0 chr13 19070813 19070863 -100674035 + AT_rich Low_complexity Low_complexity 1 50 0 22 88 0 0 chr13 19071303 19071360 -100673538 + AT_rich Low_complexity Low_complexity 1 57 0 250 284 37 12 chr13 19072015 19072096 -100672802 - MIR SINE MIR -149 113 31 304 327 80 34 chr13 19073329 19073592 -100671306 + L3b LINE CR1 1111 1385 -198 2319 99 3 0 chr13 19073606 19073910 -100670988 - AluSp SINE Alu -8 305 1 2485 72 3 3 chr13 19074009 19074315 -100670583 + AluSp SINE Alu 1 306 -7 2131 99 0 11 chr13 19075254 19075536 -100669362 - AluSx SINE Alu -33 279 1 375 174 14 0 chr13 19075797 19075866 -100669032 - L1 LINE L1 -1165 4981 4912 4280 144 61 29 chr13 19075872 19076759 -100668139 + L1MA4A LINE L1 4377 5235 -1068 2224 118 3 7 chr13 19076759 19077063 -100667835 + AluSx SINE Alu 1 303 -9 2345 95 3 0 chr13 19077066 19077362 -100667536 + AluSp SINE Alu 1 297 -16 4280 144 61 29 chr13 19077362 19078213 -100666685 + L1MA4A LINE L1 5236 6302 -1 2170 113 0 13 chr13 19078214 19078524 -100666374 + AluSx SINE Alu 1 306 -6 1230 123 0 0 chr13 19078905 19079075 -100665823 - AluSc SINE Alu 0 309 140 7483 63 150 4 chr13 19079076 19080142 -100664756 + MER11B LTR ERVK 1 1222 -14 1221 76 0 0 chr13 19080183 19080327 -100664571 - AluSc SINE Alu -165 144 1 1152 157 46 28 chr13 19080705 19080921 -100663977 - AluJb SINE Alu -26 286 67 1411 118 0 0 chr13 19080921 19081107 -100663791 + AluY SINE Alu 1 186 -125 404 208 13 0 chr13 19081136 19081213 -100663685 - AluJb SINE Alu -233 79 2 23 0 0 0 chr13 19081337 19081360 -100663538 + AT_rich Low_complexity Low_complexity 1 23 0 2780 153 50 21 chr13 19081775 19082310 -100662588 + L1MB4 LINE L1 5629 6179 -1 1605 160 14 34 chr13 19082835 19083129 -100661769 + AluJb SINE Alu 1 288 -24 1911 130 11 3 chr13 19083230 19083515 -100661383 - AluSx SINE Alu -25 287 1 1564 206 0 13 chr13 19083515 19083821 -100661077 - AluJo SINE Alu -8 304 3 1636 76 0 19 chr13 19083856 19084067 -100660831 + AluY SINE Alu 11 217 -94 757 185 14 0 chr13 19084170 19084316 -100660582 + AluSg/x SINE Alu 139 286 -26 585 186 16 16 chr13 19084313 19084437 -100660461 + AluSg/x SINE Alu 185 308 -4 * 1411 151 19 55 chr13 19084441 19084712 -100660186 - AluSx SINE Alu -21 291 31 1980 138 57 131 chr13 19084715 19085230 -100659668 - LTR12 LTR ERV1 -237 2201 55 227 176 39 20 chr13 19085230 19085281 -100659617 - LTR30 LTR ERV1 -670 52 1 * 238 176 147 0 chr13 19085281 19085314 -100659584 - AluS SINE Alu -260 43 1 257 140 20 20 chr13 19085281 19085331 -100659567 - AluSp SINE Alu -134 169 120 407 279 240 29 chr13 19085397 19085971 -100658927 + L2 LINE L2 2624 3305 -8 301 114 0 0 chr13 19086236 19086280 -100658618 - AluSx SINE Alu -251 48 5 1788 190 0 3 chr13 19086335 19086630 -100658268 + AluJb SINE Alu 1 294 -18 730 181 60 20 chr13 19086631 19086780 -100658118 + L1M4 LINE L1 3700 3854 -2292 1102 78 0 0 chr13 19086781 19086910 -100657988 + AluSg SINE Alu 2 130 -180 1520 111 0 0 chr13 19086920 19087127 -100657771 + AluSg SINE Alu 105 311 -1 1467 193 20 57 chr13 19087131 19087443 -100657455 + L1M4 LINE L1 3895 4194 -1952 814 120 0 113 chr13 19087443 19087593 -100657305 + FLAM_C SINE Alu 1 133 0 1467 193 20 57 chr13 19087593 19087633 -100657265 + L1M4 LINE L1 4194 4234 -1912 1368 125 15 4 chr13 19087635 19087827 -100657071 + L1M3 LINE L1 5471 5662 -509 1881 178 0 3 chr13 19087827 19088125 -100656773 + AluJo SINE Alu 16 312 0 1368 125 15 4 chr13 19088125 19088147 -100656751 + L1M3 LINE L1 5662 5682 -489 2424 88 0 10 chr13 19088268 19088576 -100656322 + AluSx SINE Alu 1 305 -7 307 287 113 0 chr13 19088701 19088816 -100656082 - LTR67 LTR ERVL -2 555 428 692 96 0 0 chr13 19088910 19089004 -100655894 - AluJb SINE Alu -209 103 10 255 250 0 0 chr13 19089420 19089480 -100655418 - MER5B DNA MER1_type 0 178 119 2046 54 0 8 chr13 19089720 19089961 -100654937 + AluY SINE Alu 62 300 -11 1644 113 16 23 chr13 19090020 19090276 -100654622 + AluSx SINE Alu 47 300 -12 553 107 0 0 chr13 19090835 19090910 -100653988 + FRAM/FAM SINE Alu 1 74 -102 1850 233 139 20 chr13 19091022 19091547 -100653351 + MLT1E2 LTR MaLR 1 598 -28 2027 114 32 38 chr13 19091547 19091729 -100653169 + MER44D DNA MER2_type 1 183 -2308 2469 96 0 3 chr13 19091729 19092042 -100652856 - AluSx SINE Alu 0 312 1 2027 114 32 38 chr13 19092042 19092200 -100652698 + MER44D DNA MER2_type 183 609 0 1850 233 139 20 chr13 19092200 19092233 -100652665 + MLT1E2 LTR MaLR 598 626 0 2435 88 0 0 chr13 19092799 19093095 -100651803 + AluSx SINE Alu 1 296 -16 2079 129 7 0 chr13 19093102 19093397 -100651501 + AluSx SINE Alu 1 297 -15 1285 133 68 117 chr13 19093403 19093712 -100651186 + AluJb SINE Alu 1 294 -18 318 287 131 8 chr13 19094639 19094761 -100650137 - L2 LINE L2 0 3272 3136 1203 183 5 0 chr13 19095200 19095413 -100649485 - AluJo SINE Alu -85 227 14 929 196 37 5 chr13 19095453 19095667 -100649231 - AluSp SINE Alu -25 288 68 2218 85 13 10 chr13 19096007 19096314 -100648584 + AluSp SINE Alu 3 310 -3 1638 172 10 3 chr13 19096330 19096627 -100648271 + AluJo SINE Alu 14 312 0 578 236 45 6 chr13 19096793 19096950 -100647948 - MLT1C LTR MaLR -49 418 256 216 204 0 23 chr13 19096976 19097020 -100647878 + CT-rich Low_complexity Low_complexity 4 46 0 872 154 7 0 chr13 19097029 19097172 -100647726 - AluJb SINE Alu -32 280 137 466 144 10 10 chr13 19097743 19097840 -100647058 + GA-rich Low_complexity Low_complexity 3 99 0 312 257 109 0 chr13 19097846 19097947 -100646951 + L2 LINE L2 3144 3255 -17 188 138 0 0 chr13 19098142 19098171 -100646727 + L2 LINE L2 3025 3053 -219 368 311 125 0 chr13 19098213 19098409 -100646489 + MIR SINE MIR 24 249 -13 1205 94 0 6 chr13 19100938 19101098 -100643800 + AluY SINE Alu 1 159 -152 369 389 12 0 chr13 19101287 19101454 -100643444 + G-rich Low_complexity Low_complexity 4 172 0 226 176 0 0 chr13 19101469 19101520 -100643378 + AluSp/q SINE Alu 253 303 0 1926 137 0 11 chr13 19101563 19101893 -100643005 - AluSx SINE Alu 0 327 1 694 146 182 16 chr13 19101901 19102093 -100642805 - L1MC5 LINE L1 -51 7910 7687 * 2367 176 63 37 chr13 19102072 19102289 -100642609 + L1M4 LINE L1 4143 4353 -1793 2293 173 73 7 chr13 19102289 19102716 -100642182 - MSTB2 LTR MaLR -2 455 1 2367 176 63 37 chr13 19102716 19103144 -100641754 + L1M4 LINE L1 4353 4805 -1341 2201 96 0 7 chr13 19103144 19103436 -100641462 + AluSg SINE Alu 1 290 -20 2416 179 39 42 chr13 19103553 19103620 -100641278 + L1M4 LINE L1 4783 4849 -1297 2215 90 10 7 chr13 19103620 19103910 -100640988 - AluSc SINE Alu -16 293 3 2416 179 39 42 chr13 19103910 19104097 -100640801 + L1M4 LINE L1 4849 5035 -1111 3467 79 23 0 chr13 19104097 19104540 -100640358 - MLT2A2 LTR ERVL 0 453 1 2416 179 39 42 chr13 19104540 19104882 -100640016 + L1M4 LINE L1 5035 5378 -768 1702 164 34 7 chr13 19104882 19105244 -100639654 + AluSx SINE Alu 1 370 0 11163 176 45 30 chr13 19105244 19105454 -100639444 + L1MB1 LINE L1 2761 2966 -3202 2307 107 0 10 chr13 19105454 19105762 -100639136 + AluSg SINE Alu 1 305 -5 11163 176 45 30 chr13 19105762 19107072 -100637826 + L1MB1 LINE L1 2966 4346 -1822 2121 119 10 3 chr13 19107072 19107365 -100637533 - AluSx SINE Alu -17 295 1 11163 176 45 30 chr13 19107365 19108510 -100636388 + L1MB1 LINE L1 4346 5472 -696 360 0 0 0 chr13 19108513 19108553 -100636345 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 548 132 0 0 chr13 19108558 19108634 -100636264 - AluJ SINE Alu -25 287 212 * 721 185 7 7 chr13 19108631 19108766 -100636132 - AluJ SINE Alu -164 148 14 3668 149 12 82 chr13 19108769 19109054 -100635844 + L1MB1 LINE L1 5452 5755 -413 709 177 8 0 chr13 19109054 19109184 -100635714 + FLAM_A SINE Alu 1 131 -2 3668 149 12 82 chr13 19109184 19109456 -100635442 + L1MB1 LINE L1 5755 5943 -225 2371 86 0 0 chr13 19109456 19109747 -100635151 + AluSx SINE Alu 5 295 -17 3668 149 12 82 chr13 19109747 19109957 -100634941 + L1MB1 LINE L1 5943 6166 -2 1926 110 26 55 chr13 19110028 19110364 -100634534 - AluSg SINE Alu 0 327 1 2467 82 3 0 chr13 19110365 19110670 -100634228 - AluSx SINE Alu -6 306 1 664 158 0 65 chr13 19110801 19110940 -100633958 - FLAM_C SINE Alu -12 131 2 1719 191 40 47 chr13 19111398 19111545 -100633353 - Charlie4a DNA MER1_type -1453 508 361 2446 98 30 8 chr13 19111545 19111911 -100632987 - THE1C LTR MaLR 0 375 2 1719 191 40 47 chr13 19111911 19112186 -100632712 - Charlie4a DNA MER1_type -1600 361 89 1989 115 33 0 chr13 19112475 19112745 -100632153 + AluSx SINE Alu 1 279 -33 201 39 0 0 chr13 19112747 19112773 -100632125 + (CAA)n Simple_repeat Simple_repeat 1 26 0 624 165 78 0 chr13 19113599 19113714 -100631184 - MER5A DNA MER1_type -5 184 61 1661 167 4 7 chr13 19113757 19114038 -100630860 - AluSx SINE Alu -31 281 2 328 225 28 0 chr13 19114589 19114660 -100630238 - MER5A DNA MER1_type -114 75 3 200 194 0 0 chr13 19114699 19114735 -100630163 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 2394 72 10 0 chr13 19114739 19115030 -100629868 - AluSg SINE Alu -16 294 1 1300 193 127 36 chr13 19115086 19115417 -100629481 + MER93b LTR ERV1 13 373 0 468 225 83 0 chr13 19115432 19115555 -100629343 - L1ME1 LINE L1 0 6334 6041 1884 172 0 0 chr13 19115567 19115858 -100629040 + AluJb SINE Alu 13 303 -9 1224 175 13 4 chr13 19116014 19116242 -100628656 - L1ME1 LINE L1 -134 6032 5803 24 53 0 0 chr13 19116323 19116361 -100628537 + AT_rich Low_complexity Low_complexity 1 38 0 892 179 24 126 chr13 19116382 19116628 -100628270 - AluJo SINE Alu -89 223 3 1460 193 56 11 chr13 19116658 19116927 -100627971 + AluJo SINE Alu 1 281 -31 324 0 0 0 chr13 19116927 19116963 -100627935 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2560 70 0 0 chr13 19117317 19117619 -100627279 - AluSx SINE Alu -10 302 1 1172 59 0 0 chr13 19117620 19117755 -100627143 - AluSq/x SINE Alu -177 135 1 913 171 96 64 chr13 19117760 19118011 -100626887 - MER33 DNA MER1_type -58 266 8 184 276 26 26 chr13 19118179 19118255 -100626643 - MIR3 SINE MIR -43 165 90 346 313 6 39 chr13 19118434 19118616 -100626282 - MER5A DNA MER1_type -13 176 1 1669 124 83 4 chr13 19118815 19119117 -100625781 + AluSx SINE Alu 5 327 0 23 33 0 0 chr13 19119156 19119186 -100625712 + AT_rich Low_complexity Low_complexity 1 30 0 1955 101 4 43 chr13 19119221 19119524 -100625374 + AluSq SINE Alu 17 308 0 22 0 0 0 chr13 19119592 19119614 -100625284 + AT_rich Low_complexity Low_complexity 1 22 0 1557 173 20 14 chr13 19119621 19119916 -100624982 + AluJo SINE Alu 1 297 -15 1631 175 158 25 chr13 19120513 19120671 -100624227 + MLT1C LTR MaLR 1 137 -330 2008 88 62 39 chr13 19120671 19120976 -100623922 + AluSx SINE Alu 1 312 0 1631 175 158 25 chr13 19120976 19121223 -100623675 + MLT1C LTR MaLR 137 460 -7 889 166 31 34 chr13 19121306 19121509 -100623389 - MLT1A1 LTR MaLR 0 374 144 1935 82 7 44 chr13 19123096 19123366 -100621532 + AluSq SINE Alu 34 293 -20 28 0 0 0 chr13 19123575 19123603 -100621295 + AT_rich Low_complexity Low_complexity 1 28 0 412 61 30 30 chr13 19123958 19124024 -100620874 - Alu SINE Alu -251 67 2 940 157 0 24 chr13 19124453 19124619 -100620279 - MLT1A1 LTR MaLR -203 162 1 272 271 47 9 chr13 19124883 19124990 -100619908 - L1ME LINE L1 -509 5612 5502 2465 53 10 3 chr13 19125072 19125374 -100619524 + AluY SINE Alu 1 304 -7 2317 91 0 7 chr13 19125384 19125698 -100619200 + AluSx SINE Alu 1 312 0 27 0 0 0 chr13 19125896 19125923 -100618975 + AT_rich Low_complexity Low_complexity 1 27 0 1849 227 75 98 chr13 19125979 19127125 -100617773 + L1MC5 LINE L1 6788 7907 -54 1047 110 0 0 chr13 19127185 19127321 -100617577 + AluSq/x SINE Alu 1 136 -176 2048 118 10 7 chr13 19127321 19127609 -100617289 + AluSx SINE Alu 1 289 -23 205 217 0 29 chr13 19128378 19128447 -100616451 + T-rich Low_complexity Low_complexity 5 71 0 764 169 0 0 chr13 19128450 19128568 -100616330 - FLAM_C SINE Alu -15 118 1 286 263 74 0 chr13 19128888 19128983 -100615915 - MLT1J LTR MaLR -98 413 312 775 62 71 18 chr13 19130836 19130948 -100613950 + MER30 DNA MER1_type 2 119 -111 2227 97 7 7 chr13 19130951 19131250 -100613648 + AluSx SINE Alu 1 299 -13 358 264 124 3 chr13 19131347 19131544 -100613354 + L1ME1 LINE L1 1325 1667 -5293 1522 287 85 36 chr13 19131560 19131653 -100613245 + L1ME1 LINE L1 1495 1582 -5556 1638 157 20 34 chr13 19131653 19131947 -100612951 - AluJb SINE Alu -22 290 1 1522 287 85 36 chr13 19131947 19132889 -100612009 + L1ME1 LINE L1 1582 2728 -4410 2541 60 0 10 chr13 19132895 19133209 -100611689 - AluY SINE Alu 0 311 1 708 90 0 63 chr13 19133260 19133371 -100611527 + MSTA LTR MaLR 1 104 -324 1910 122 3 83 chr13 19133371 19133698 -100611200 - AluSx SINE Alu -7 305 5 2299 105 0 0 chr13 19133710 19134005 -100610893 - AluSg SINE Alu -14 296 2 4898 207 60 100 chr13 19134008 19134649 -100610249 + L1ME1 LINE L1 4514 5179 -1798 2191 95 4 0 chr13 19134649 19134922 -100609976 + AluSc SINE Alu 1 274 -35 4898 207 60 100 chr13 19134922 19135066 -100609832 + L1ME1 LINE L1 5179 5327 -1650 4519 25 2 2 chr13 19135066 19135587 -100609311 + L1PA3 LINE L1 5634 6154 -1 4898 207 60 100 chr13 19135587 19136727 -100608171 + L1ME1 LINE L1 5327 6389 -588 669 202 0 0 chr13 19136727 19136841 -100608057 - FLAM_C SINE Alu -27 116 3 4898 207 60 100 chr13 19136841 19137340 -100607558 + L1ME1 LINE L1 6389 6907 -70 1918 84 4 48 chr13 19138101 19138374 -100606524 - AluSq SINE Alu -8 305 45 1039 217 63 3 chr13 19138603 19138889 -100606009 + MER33 DNA MER1_type 20 322 -2 27 29 0 0 chr13 19139044 19139078 -100605820 + AT_rich Low_complexity Low_complexity 1 34 0 2012 118 4 11 chr13 19139082 19139362 -100605536 - AluSx SINE Alu -34 278 1 273 57 0 0 chr13 19139385 19139420 -100605478 + (T)n Simple_repeat Simple_repeat 1 35 0 2293 103 3 0 chr13 19139521 19139822 -100605076 - AluSp SINE Alu -11 302 1 324 0 0 0 chr13 19139831 19139867 -100605031 + (T)n Simple_repeat Simple_repeat 1 36 0 262 200 0 14 chr13 19140141 19140211 -100604687 + AluY SINE Alu 129 197 -104 231 119 48 0 chr13 19140208 19140250 -100604648 + Alu SINE Alu 90 133 0 * 264 323 113 0 chr13 19140944 19141068 -100603830 + L3 LINE CR1 1276 1413 -164 306 304 0 0 chr13 19141200 19141358 -100603540 + (CA)n Simple_repeat Simple_repeat 1 158 0 349 210 0 0 chr13 19141364 19141426 -100603472 - MER5B DNA MER1_type -78 100 39 2297 131 0 6 chr13 19142010 19142324 -100602574 - AluSx SINE Alu 0 312 1 449 286 29 11 chr13 19142332 19142507 -100602391 - L1MC5 LINE L1 -37 7924 7747 377 58 0 0 chr13 19143131 19143183 -100601715 + MADE1 DNA Mariner 1 52 -28 528 128 0 0 chr13 19143523 19143601 -100601297 - AluSp/q SINE Alu -14 299 222 350 270 15 7 chr13 19143804 19143941 -100600957 + L1M4 LINE L1 4995 5132 -1014 2299 67 0 53 chr13 19143942 19144289 -100600609 + AluSq SINE Alu 1 331 0 451 291 268 0 chr13 19144365 19144544 -100600354 - MIR SINE MIR -1 261 35 1931 135 28 0 chr13 19144641 19144923 -100599975 + AluSx SINE Alu 3 292 -20 2318 120 3 0 chr13 19145659 19145967 -100598931 + AluSx SINE Alu 1 309 -3 962 133 0 14 chr13 19146112 19146255 -100598643 + FLAM_C SINE Alu 3 143 0 2161 124 17 0 chr13 19147005 19147296 -100597602 + AluSx SINE Alu 1 296 -16 2186 112 11 0 chr13 19147298 19147584 -100597314 + AluSx SINE Alu 1 289 -23 2266 116 3 0 chr13 19147586 19147889 -100597009 + AluSx SINE Alu 1 304 -8 343 291 68 0 chr13 19148531 19148648 -100596250 - L2 LINE L2 -25 3247 3123 219 139 0 0 chr13 19149487 19149523 -100595375 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 242 116 23 0 chr13 19149541 19149584 -100595314 + CT-rich Low_complexity Low_complexity 2 45 0 1799 180 0 19 chr13 19149584 19149901 -100594997 - AluJo SINE Alu -1 311 1 323 229 14 14 chr13 19150461 19150531 -100594367 + L2 LINE L2 3205 3274 -39 197 327 39 19 chr13 19150681 19150785 -100594113 + MIR SINE MIR 65 170 -92 1284 194 34 60 chr13 19151049 19151399 -100593499 + MER7C DNA MER2_type 1 341 -261 520 141 66 25 chr13 19151507 19151620 -100593278 + MER7C DNA MER2_type 316 433 -170 648 176 42 0 chr13 19151620 19151739 -100593159 + MER6 DNA MER2_type 1 124 -741 489 133 0 22 chr13 19151735 19151825 -100593073 + MER6 DNA MER2_type 778 865 0 * 1083 134 6 0 chr13 19151825 19151988 -100592910 + MER7C DNA MER2_type 439 602 0 2345 160 47 13 chr13 19152656 19153105 -100591793 - MER101 LTR ERV1 0 474 11 381 253 104 0 chr13 19153176 19153330 -100591568 - HAL1 LINE L1 -1599 908 739 219 36 0 0 chr13 19153494 19153522 -100591376 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2031 125 0 0 chr13 19153522 19153801 -100591097 - AluSx SINE Alu -33 279 1 208 182 18 55 chr13 19154551 19154606 -100590292 - L2 LINE L2 -1 3271 3219 600 330 51 3 chr13 19154775 19155129 -100589769 - L1ME LINE L1 -412 5758 5388 263 196 54 76 chr13 19155568 19155660 -100589238 + L2 LINE L2 2626 2715 -599 2208 118 3 3 chr13 19155660 19155957 -100588941 + AluSx SINE Alu 1 297 -15 1111 40 0 40 chr13 19155957 19156186 -100588712 + (TA)n Simple_repeat Simple_repeat 1 219 0 2166 89 3 74 chr13 19157552 19157888 -100587010 - AluSp SINE Alu -1 312 1 926 146 0 20 chr13 19157892 19158043 -100586855 - FRAM SINE Alu -8 168 21 2203 114 7 3 chr13 19159270 19159568 -100585330 - AluSq SINE Alu -14 299 1 1535 151 22 80 chr13 19159847 19159979 -100584919 + AluJb SINE Alu 1 139 -173 2211 135 0 3 chr13 19159979 19160290 -100584608 + AluSx SINE Alu 1 310 -2 1535 151 22 80 chr13 19160290 19160481 -100584417 + AluJb SINE Alu 139 305 -7 1737 164 12 49 chr13 19160718 19161042 -100583856 + AluJo SINE Alu 1 312 0 2026 135 0 13 chr13 19161043 19161346 -100583552 + AluJb SINE Alu 1 299 -13 2492 82 0 0 chr13 19161508 19161814 -100583084 + AluY SINE Alu 1 306 -5 2285 102 7 0 chr13 19161814 19162109 -100582789 + AluSp SINE Alu 1 297 -16 4198 126 38 7 chr13 19162109 19162960 -100581938 + L1MA4A LINE L1 5322 6302 -1 2199 113 0 25 chr13 19162961 19163281 -100581617 + AluSx SINE Alu 1 312 0 255 79 0 0 chr13 19164394 19164432 -100580466 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 560 103 32 174 chr13 19166530 19166637 -100578261 - FLAM_C SINE Alu -169 133 53 222 37 0 0 chr13 19166637 19166664 -100578234 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 560 103 32 174 chr13 19166664 19166711 -100578187 - FLAM_C SINE Alu -249 53 1 192 250 36 18 chr13 19167827 19167883 -100577015 + MIR SINE MIR 34 90 -118 2501 85 0 3 chr13 19168812 19169119 -100575779 + AluSc SINE Alu 1 306 -3 208 342 26 13 chr13 19169331 19169407 -100575491 + L2 LINE L2 3171 3247 -25 1391 166 158 4 chr13 19170669 19170928 -100573970 + AluJo SINE Alu 2 300 -2 350 256 19 30 chr13 19171141 19171245 -100573653 + MIR SINE MIR 65 162 -46 198 292 0 0 chr13 19171618 19171666 -100573232 + L2 LINE L2 3223 3270 -2 261 262 56 19 chr13 19172376 19172483 -100572415 + L2 LINE L2 2420 2530 -784 2045 144 3 10 chr13 19172499 19172797 -100572101 - AluSx SINE Alu -14 298 3 226 238 16 32 chr13 19173618 19173681 -100571217 + LTR16A LTR ERVL 245 306 -144 1589 143 47 14 chr13 19174211 19174490 -100570408 + AluJb SINE Alu 12 299 -13 378 68 85 0 chr13 19175526 19175585 -100569313 - U6 snRNA snRNA -43 64 1 1446 179 65 21 chr13 19175585 19175875 -100569023 - AluJo SINE Alu -9 303 1 1060 129 101 60 chr13 19175932 19176149 -100568749 + AluSg/x SINE Alu 80 305 -7 23 0 0 0 chr13 19176191 19176214 -100568684 + AT_rich Low_complexity Low_complexity 1 23 0 2175 111 0 0 chr13 19176218 19176497 -100568401 + AluY SINE Alu 1 279 -32 198 0 0 0 chr13 19176500 19176522 -100568376 + (TAA)n Simple_repeat Simple_repeat 3 24 0 22 56 0 0 chr13 19176582 19176618 -100568280 + AT_rich Low_complexity Low_complexity 1 36 0 231 367 14 50 chr13 19177148 19177287 -100567611 + MIR3 SINE MIR 68 201 -7 544 233 48 0 chr13 19177502 19177648 -100567250 + MLT1H LTR MaLR 75 227 -322 330 266 86 22 chr13 19177710 19177849 -100567049 + MLT1H LTR MaLR 341 488 -67 1003 135 0 0 chr13 19177862 19178003 -100566895 + AluSg/x SINE Alu 148 288 -24 642 265 24 6 chr13 19178130 19178300 -100566598 - L1ME3A LINE L1 -295 5875 5703 251 242 11 105 chr13 19178800 19178895 -100566003 - MER91B DNA MER1_type -104 86 1 180 294 94 24 chr13 19178895 19178973 -100565925 - L2 LINE L2 -52 3220 3137 1534 204 7 0 chr13 19179312 19179596 -100565302 + AluJo SINE Alu 1 286 -26 285 276 72 23 chr13 19179620 19179798 -100565100 + MIR3 SINE MIR 6 186 -76 2018 152 7 3 chr13 19179984 19180287 -100564611 - AluSx SINE Alu -8 304 1 2451 83 0 0 chr13 19180590 19180892 -100564006 + AluSc SINE Alu 1 302 -7 1558 179 74 14 chr13 19181352 19181715 -100563183 + L1MB4 LINE L1 5790 6174 -6 1358 123 202 40 chr13 19181804 19182057 -100562841 + AluSg SINE Alu 1 294 -6 305 103 0 118 chr13 19183771 19183839 -100561059 - Alu SINE Alu -9 293 234 850 129 0 0 chr13 19183858 19183974 -100560924 - AluJb SINE Alu -196 116 1 2149 75 78 24 chr13 19185170 19185464 -100559434 + AluY SINE Alu 1 310 -1 2227 87 7 0 chr13 19187077 19187360 -100557538 + AluY SINE Alu 1 286 -21 181 0 0 0 chr13 19187360 19187380 -100557518 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2073 87 11 7 chr13 19187449 19187736 -100557162 + AluSx SINE Alu 5 292 -20 21 0 0 0 chr13 19188371 19188392 -100556506 + GC_rich Low_complexity Low_complexity 1 21 0 461 65 0 0 chr13 19188596 19188658 -100556240 + Alu SINE Alu 240 301 -10 180 0 0 0 chr13 19188717 19188737 -100556161 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2227 97 0 0 chr13 19188761 19189059 -100555839 - AluSq SINE Alu -15 298 1 2150 29 39 72 chr13 19189777 19190083 -100554815 - AluY SINE Alu -15 296 1 1094 155 52 0 chr13 19190704 19190898 -100554000 - MLT1A1 LTR MaLR 0 365 162 898 124 14 0 chr13 19190900 19191045 -100553853 + AluSg/x SINE Alu 128 274 -38 1992 91 4 0 chr13 19191053 19191317 -100553581 + AluSp SINE Alu 1 265 -48 1803 100 0 4 chr13 19191315 19191555 -100553343 + AluSc SINE Alu 18 256 -53 * 296 188 0 0 chr13 19191563 19191611 -100553287 - MLT1A1 LTR MaLR -222 143 96 403 77 0 0 chr13 19192062 19192114 -100552784 - Alu SINE Alu -257 53 2 1970 120 7 7 chr13 19192270 19192561 -100552337 - AluSx SINE Alu -21 291 1 466 287 14 106 chr13 19192634 19192818 -100552080 - L2 LINE L2 0 3313 3162 1981 144 3 3 chr13 19192818 19193130 -100551768 + AluSx SINE Alu 1 312 0 466 287 14 106 chr13 19193130 19193227 -100551671 - L2 LINE L2 -151 3162 3058 1573 187 25 7 chr13 19193232 19193516 -100551382 + AluJb SINE Alu 1 289 -13 845 157 25 19 chr13 19193537 19193696 -100551202 + AluJo SINE Alu 122 281 -31 21 0 0 0 chr13 19193774 19193795 -100551103 + AT_rich Low_complexity Low_complexity 1 21 0 873 131 0 22 chr13 19193797 19193934 -100550964 - AluJb SINE Alu -178 134 1 1272 279 134 34 chr13 19193935 19194635 -100550263 + L1MC4a LINE L1 5260 6029 -1779 100 68 0 0 chr13 19194677 19194868 -100550030 + AT_rich Low_complexity Low_complexity 1 191 0 2128 121 0 0 chr13 19194869 19195166 -100549732 - AluSx SINE Alu -15 297 1 663 140 0 0 chr13 19195455 19195562 -100549336 - AluJ SINE Alu -9 303 197 * 783 162 120 0 chr13 19195556 19195698 -100549200 - AluJ SINE Alu -152 160 2 237 255 128 39 chr13 19195836 19195938 -100548960 + L2 LINE L2 3203 3313 0 210 125 0 83 chr13 19196728 19196776 -100548122 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 254 65 87 0 chr13 19196786 19196832 -100548066 + FLAM SINE Alu 84 133 0 752 241 27 68 chr13 19196885 19196963 -100547935 + MIR SINE MIR 31 111 -151 1155 181 114 55 chr13 19196963 19197306 -100547592 + MLT1A1 LTR MaLR 3 365 0 752 241 27 68 chr13 19197306 19197447 -100547451 + MIR SINE MIR 111 241 -21 321 312 26 79 chr13 19197686 19197827 -100547071 + MER91B DNA MER1_type 2 132 -58 1871 147 3 10 chr13 19197827 19198126 -100546772 - AluSx SINE Alu -10 302 6 321 312 26 79 chr13 19198126 19198173 -100546725 + MER91B DNA MER1_type 132 180 -10 972 157 41 15 chr13 19198867 19199064 -100545834 - L1MB2 LINE L1 -2 6169 5968 261 0 0 0 chr13 19199117 19199146 -100545752 + (CA)n Simple_repeat Simple_repeat 1 29 0 1331 197 23 83 chr13 19199152 19199538 -100545360 - MLT1A1 LTR MaLR -2 363 1 2185 87 3 0 chr13 19199881 19200169 -100544729 + AluSp SINE Alu 20 308 -5 793 138 0 32 chr13 19200688 19200811 -100544087 + FLAM_C SINE Alu 7 125 -18 1670 106 0 0 chr13 19200822 19201048 -100543850 + AluSg SINE Alu 1 226 -84 1070 141 22 22 chr13 19201644 19201829 -100543069 + MER47A DNA MER2_type 24 208 -158 698 71 20 0 chr13 19201929 19202028 -100542870 + MER47A DNA MER2_type 181 281 -85 2128 106 3 0 chr13 19202031 19202323 -100542575 - AluSx SINE Alu -16 296 4 935 170 44 0 chr13 19202334 19202493 -100542405 - FAM SINE Alu -5 170 5 2305 84 0 0 chr13 19202520 19202816 -100542082 - AluSq SINE Alu -17 296 1 231 250 214 0 chr13 19202820 19202904 -100541994 + MER94 DNA DNA 28 129 -5 258 321 58 21 chr13 19202917 19203107 -100541791 + L2 LINE L2 2566 2762 -552 465 133 0 67 chr13 19203163 19203225 -100541673 - MLT1A1 LTR MaLR 0 365 309 2100 114 7 0 chr13 19203225 19203531 -100541367 + AluSx SINE Alu 1 308 -4 465 133 0 67 chr13 19203531 19203558 -100541340 - MLT1A1 LTR MaLR -56 309 282 877 201 37 123 chr13 19203600 19203924 -100540974 - MLT1A1 LTR MaLR -69 296 1 1654 136 19 49 chr13 19203982 19204119 -100540779 + AluJo SINE Alu 1 140 -172 2208 100 13 0 chr13 19204119 19204419 -100540479 + AluSx SINE Alu 1 304 -8 2333 68 0 6 chr13 19204419 19204730 -100540168 + AluY SINE Alu 1 309 -2 1654 136 19 49 chr13 19204730 19204899 -100539999 + AluJo SINE Alu 138 299 -13 656 105 61 18 chr13 19204901 19205015 -100539883 - L1MC/D LINE L1 -762 5571 5453 236 327 73 48 chr13 19205328 19205723 -100539175 - L2 LINE L2 -12 3260 2856 2196 92 3 3 chr13 19205902 19206207 -100538691 + AluSq SINE Alu 1 305 -8 544 154 106 49 chr13 19206255 19206378 -100538520 - FLAM_C SINE Alu -3 130 1 2457 126 32 7 chr13 19206379 19206783 -100538115 + L1MC1 LINE L1 5559 5972 -361 26 0 0 0 chr13 19206913 19206939 -100537959 + AT_rich Low_complexity Low_complexity 1 26 0 920 151 0 7 chr13 19207096 19207248 -100537650 - AluSg/x SINE Alu -13 297 147 2144 82 0 0 chr13 19207415 19207726 -100537172 + AluSg SINE Alu 9 310 0 270 276 125 48 chr13 19207797 19208037 -100536861 + L1ME3A LINE L1 5539 5810 -311 1854 133 7 0 chr13 19208037 19208322 -100536576 + AluSx SINE Alu 1 287 -25 270 276 125 48 chr13 19208322 19208392 -100536506 + L1ME3A LINE L1 5810 5873 -248 212 323 70 61 chr13 19208430 19208659 -100536239 - L2 LINE L2 -46 3226 2996 837 176 85 0 chr13 19208887 19209040 -100535858 + AluJb SINE Alu 137 302 -10 669 172 15 60 chr13 19209279 19209413 -100535485 - FLAM_C SINE Alu -1 132 5 1016 127 14 0 chr13 19209440 19209582 -100535316 - U4 snRNA snRNA -1 144 1 1755 97 4 12 chr13 19209653 19209912 -100534986 + AluSx SINE Alu 45 301 -11 2111 123 3 3 chr13 19210705 19211014 -100533884 + AluSq SINE Alu 1 309 -4 1822 142 33 0 chr13 19211019 19211321 -100533577 + AluJb SINE Alu 1 312 0 645 165 9 9 chr13 19211773 19211888 -100533010 + LTR56 LTR ERV1 4 118 -327 2366 65 0 0 chr13 19211892 19212186 -100532712 - AluY SINE Alu -17 294 1 21 36 0 0 chr13 19213192 19213220 -100531678 + AT_rich Low_complexity Low_complexity 1 28 0 341 260 30 0 chr13 19213228 19213328 -100531570 + L1ME3A LINE L1 6065 6167 -3 1301 212 42 3 chr13 19213328 19213611 -100531287 + AluJb SINE Alu 1 294 -18 2200 89 13 0 chr13 19213621 19213923 -100530975 + AluY SINE Alu 1 306 -5 1936 120 3 13 chr13 19213966 19214265 -100530633 + AluSx SINE Alu 1 296 -16 450 0 0 0 chr13 19215604 19215654 -100529244 + (TG)n Simple_repeat Simple_repeat 2 51 0 1609 124 29 18 chr13 19215662 19215937 -100528961 - AluJo SINE Alu -30 282 5 22 0 0 0 chr13 19216987 19217009 -100527889 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 19217445 19217466 -100527432 + AT_rich Low_complexity Low_complexity 1 21 0 224 261 15 46 chr13 19218634 19218699 -100526199 - MIR SINE MIR -4 258 196 2255 85 0 19 chr13 19219463 19219782 -100525116 + AluSq SINE Alu 1 313 0 255 242 0 30 chr13 19219952 19220018 -100524880 - L2 LINE L2 -325 2988 2925 30 59 0 0 chr13 19220622 19220673 -100524225 + GC_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr13 19220784 19220818 -100524080 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 19220861 19220882 -100524016 + GC_rich Low_complexity Low_complexity 1 21 0 2212 86 3 3 chr13 19221678 19221979 -100522919 + AluSp SINE Alu 2 302 -11 936 154 0 57 chr13 19222744 19222919 -100521979 - FRAM SINE Alu -11 165 1 288 244 48 48 chr13 19223121 19223369 -100521529 + L1ME4a LINE L1 5676 5915 -206 458 266 202 6 chr13 19224012 19224185 -100520713 - MIR SINE MIR -25 237 31 2171 113 0 0 chr13 19224238 19224538 -100520360 + AluSg SINE Alu 1 300 -10 1967 124 0 0 chr13 19224798 19225100 -100519798 + AluSx SINE Alu 1 302 0 1516 125 136 15 chr13 19225344 19225608 -100519290 + AluJb SINE Alu 1 296 -16 233 138 0 17 chr13 19225634 19225692 -100519206 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 439 177 38 20 chr13 19225706 19225844 -100519054 - AluJb SINE Alu -151 161 2 260 242 0 45 chr13 19225870 19225936 -100518962 + MER21B LTR ERV1 6 68 -795 2627 211 154 32 chr13 19225969 19226406 -100518492 + MER21B LTR ERV1 19 401 -462 1921 91 48 42 chr13 19226406 19226715 -100518183 - AluSx SINE Alu -1 311 1 2627 211 154 32 chr13 19226715 19227017 -100517881 + MER21B LTR ERV1 401 848 -15 1845 130 27 0 chr13 19227362 19227654 -100517244 - AluJb SINE Alu -8 304 5 1952 137 0 3 chr13 19227674 19227967 -100516931 - AluSx SINE Alu -20 292 1 330 37 0 37 chr13 19228038 19228092 -100516806 - L1MB3 LINE L1 -2 6181 6130 2009 70 11 15 chr13 19229105 19229375 -100515523 - AluY SINE Alu -11 300 32 1701 115 14 22 chr13 19229748 19230026 -100514872 - AluSx SINE Alu -12 300 25 857 162 61 71 chr13 19230876 19231074 -100513824 + AluJb SINE Alu 89 284 -28 2085 89 7 23 chr13 19231118 19231421 -100513477 + AluSg SINE Alu 1 298 -12 252 269 12 88 chr13 19231436 19231596 -100513302 - L1ME3 LINE L1 -81 6081 5934 1202 232 152 71 chr13 19231636 19232059 -100512839 - L1ME3 LINE L1 -219 5951 5564 1802 129 10 26 chr13 19232059 19232362 -100512536 - AluSq SINE Alu -15 298 1 1747 102 0 117 chr13 19232365 19232708 -100512190 - AluSx SINE Alu -9 303 1 1202 232 152 71 chr13 19232708 19232977 -100511921 - L1ME3 LINE L1 -607 5563 5197 2095 108 3 0 chr13 19234790 19235076 -100509822 - AluSx SINE Alu -25 287 1 993 99 0 0 chr13 19235115 19235246 -100509652 + AluSq/x SINE Alu 1 131 -182 306 284 31 62 chr13 19236120 19236282 -100508616 + MIR3 SINE MIR 50 206 -2 * 823 212 123 25 chr13 19236271 19236507 -100508391 + MIR SINE MIR 2 260 -2 1881 101 45 3 chr13 19236557 19236844 -100508054 - AluY SINE Alu -12 299 1 1384 170 69 22 chr13 19236927 19237203 -100507695 + AluJo SINE Alu 4 292 -20 228 35 0 0 chr13 19237203 19237232 -100507666 + (CATA)n Simple_repeat Simple_repeat 2 30 0 438 285 90 7 chr13 19237280 19237424 -100507474 + MIR SINE MIR 29 184 -78 2328 113 0 0 chr13 19237658 19237958 -100506940 + AluSx SINE Alu 1 300 -12 1506 133 0 5 chr13 19238200 19238410 -100506488 + AluJb SINE Alu 1 209 -103 2216 121 82 3 chr13 19238410 19238637 -100506261 - MER83B LTR ERV1 0 378 114 1553 128 139 4 chr13 19238637 19238903 -100505995 + AluJb SINE Alu 1 302 0 2216 121 82 3 chr13 19238903 19239015 -100505883 - MER83B LTR ERV1 -264 114 12 286 108 0 0 chr13 19239014 19239051 -100505847 + AluJ/FRAM SINE Alu 230 266 -36 * 180 111 0 0 chr13 19239095 19239122 -100505776 + (A)n Simple_repeat Simple_repeat 1 27 0 1803 152 10 14 chr13 19239310 19239599 -100505299 + AluJb SINE Alu 1 288 -24 405 55 0 0 chr13 19240282 19240337 -100504561 - L1PB1 LINE L1 -3 6148 6094 2404 86 0 9 chr13 19240338 19240653 -100504245 - AluSx SINE Alu 0 312 1 2239 157 86 80 chr13 19240654 19240772 -100504126 - L1MB4 LINE L1 -43 6137 6021 439 152 248 38 chr13 19240772 19240877 -100504021 - FLAM_A SINE Alu -5 128 2 2239 157 86 80 chr13 19240877 19241349 -100503549 - L1MB4 LINE L1 -159 6021 5543 837 194 15 77 chr13 19242092 19242152 -100502746 - MLT2C1 LTR ERVL -4 393 331 2541 65 0 3 chr13 19242152 19242458 -100502440 + AluSg SINE Alu 2 306 -4 837 194 15 77 chr13 19242458 19242730 -100502168 - MLT2C1 LTR ERVL -66 331 18 419 202 121 0 chr13 19242988 19243087 -100501811 + Tigger4(Zombi) DNA MER2_type 2 112 -2619 1302 71 0 0 chr13 19243092 19243246 -100501652 - AluSg/x SINE Alu -11 301 148 1100 168 58 0 chr13 19243246 19243454 -100501444 + Tigger4(Zombi) DNA MER2_type 2511 2730 -1 2101 101 3 42 chr13 19243538 19243844 -100501054 - AluSx SINE Alu -17 295 2 387 242 73 84 chr13 19244014 19244087 -100500811 - MER104 DNA Tc2 -1720 178 106 2264 88 7 14 chr13 19244087 19244381 -100500517 + AluSx SINE Alu 1 292 -20 387 242 73 84 chr13 19244381 19244485 -100500413 - MER104 DNA Tc2 -1792 106 3 252 246 304 7 chr13 19246235 19246373 -100498525 + MIR SINE MIR 81 259 -3 370 238 0 12 chr13 19247520 19247600 -100497298 + Tigger5 DNA MER2_type 1 79 -2244 280 307 0 0 chr13 19247603 19247678 -100497220 - Tigger5 DNA MER2_type -7 2316 2242 * 356 197 56 0 chr13 19247672 19247743 -100497155 + Tigger5 DNA MER2_type 2246 2320 -3 2172 118 23 0 chr13 19248661 19248965 -100495933 + AluSx SINE Alu 1 311 -1 2162 102 0 0 chr13 19249004 19249278 -100495620 + AluSg SINE Alu 1 274 -36 231 36 0 0 chr13 19249280 19249308 -100495590 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 191 326 119 47 chr13 19249359 19249595 -100495303 - L2 LINE L2 -25 3247 2995 330 213 185 0 chr13 19249848 19249956 -100494942 + MIR SINE MIR 117 244 -18 353 274 85 81 chr13 19249999 19250247 -100494651 - L2 LINE L2 -52 3261 3013 344 206 103 59 chr13 19250248 19250384 -100494514 - MLT1K LTR MaLR -2 586 445 327 267 204 0 chr13 19250664 19250855 -100494043 - L2 LINE L2 -338 2976 2747 2812 83 8 0 chr13 19251046 19251406 -100493492 + THE1B LTR MaLR 2 364 0 887 269 201 5 chr13 19251406 19251845 -100493053 + L2 LINE L2 1689 2213 -1101 27 29 0 0 chr13 19251945 19251979 -100492919 + AT_rich Low_complexity Low_complexity 1 34 0 1832 74 0 0 chr13 19253435 19253651 -100491247 - AluSc SINE Alu -13 296 81 1864 158 3 0 chr13 19254369 19254654 -100490244 - AluJb SINE Alu -26 286 1 270 73 0 0 chr13 19254841 19254882 -100490016 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1313 160 0 50 chr13 19254885 19255123 -100489775 - AluJo SINE Alu -30 282 57 707 212 8 0 chr13 19255425 19255557 -100489341 + FLAM_A SINE Alu 1 133 0 246 282 58 0 chr13 19255888 19255991 -100488907 + L1ME LINE L1 5675 5783 -338 2349 86 0 10 chr13 19256239 19256540 -100488358 + AluSq SINE Alu 1 298 -15 468 289 0 0 chr13 19256540 19256720 -100488178 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 239 0 0 chr13 19256773 19256819 -100488079 - L1MC4 LINE L1 -1339 6703 6658 247 309 0 0 chr13 19256845 19256942 -100487956 - L1MC4 LINE L1 -1327 6668 6612 201 268 0 0 chr13 19256945 19256986 -100487912 + (CATA)n Simple_repeat Simple_repeat 4 44 0 241 267 35 12 chr13 19256987 19257073 -100487825 + L1MC4 LINE L1 6614 6701 -1341 201 195 0 0 chr13 19257076 19257117 -100487781 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2886 16 0 0 chr13 19257630 19257941 -100486957 + AluYb8 SINE Alu 1 311 -7 1978 136 71 0 chr13 19258093 19258417 -100486481 - MER7A DNA MER2_type 0 346 2 2204 101 3 13 chr13 19259196 19259502 -100485396 + AluSg SINE Alu 6 308 -2 1114 135 29 48 chr13 19259871 19260078 -100484820 - MER3 DNA MER1_type 0 209 7 367 260 185 33 chr13 19260194 19260621 -100484277 - L1ME4a LINE L1 -68 6053 5562 299 170 20 0 chr13 19261040 19261140 -100483758 - L1ME4a LINE L1 -731 5439 5365 2093 106 14 7 chr13 19261147 19261439 -100483459 - AluSx SINE Alu -18 294 1 2533 41 3 0 chr13 19261444 19261736 -100483162 - AluY SINE Alu -17 294 2 1691 138 36 56 chr13 19263849 19264153 -100480745 + AluSx SINE Alu 1 298 -14 367 175 299 0 chr13 19264211 19264308 -100480590 + FLAM_A SINE Alu 1 126 -7 1974 112 4 4 chr13 19264316 19264583 -100480315 + AluSx SINE Alu 1 267 -45 988 102 0 0 chr13 19264707 19264835 -100480063 + AluSq/x SINE Alu 8 135 -177 1851 126 3 50 chr13 19264835 19265137 -100479761 + AluSx SINE Alu 1 288 -24 34 42 0 0 chr13 19265140 19265188 -100479710 + AT_rich Low_complexity Low_complexity 1 48 0 582 89 0 170 chr13 19265445 19265493 -100479405 + L1MA3 LINE L1 6093 6148 -157 2191 110 0 13 chr13 19265493 19265793 -100479105 + AluSc SINE Alu 1 296 -13 582 89 0 170 chr13 19265793 19265805 -100479093 + L1MA3 LINE L1 6148 6160 -145 1424 175 110 0 chr13 19265805 19266068 -100478830 + AluJb SINE Alu 1 292 -20 582 89 0 170 chr13 19266068 19266141 -100478757 + L1MA3 LINE L1 6160 6204 -101 491 150 62 0 chr13 19266288 19266368 -100478530 + FRAM SINE Alu 64 148 -28 739 193 7 0 chr13 19266379 19266514 -100478384 + FLAM_C SINE Alu 2 137 -6 572 125 0 0 chr13 19266708 19266796 -100478102 - AluJo SINE Alu -11 301 214 975 152 0 7 chr13 19266796 19266947 -100477951 - AluJo SINE Alu -162 150 1 477 127 0 13 chr13 19266998 19267077 -100477821 - AluJ/FRAM SINE Alu -9 303 226 1953 132 21 0 chr13 19267112 19267399 -100477499 + AluSx SINE Alu 2 294 -18 2014 149 0 0 chr13 19267576 19267865 -100477033 + AluSx SINE Alu 4 292 -20 201 279 128 0 chr13 19268169 19268255 -100476643 - MIR SINE MIR -74 188 92 2569 77 0 0 chr13 19268384 19268694 -100476204 - AluY SINE Alu -1 310 1 182 302 38 0 chr13 19268932 19268985 -100475913 - L2 LINE L2 -200 3072 3018 21 71 0 0 chr13 19269186 19269228 -100475670 + AT_rich Low_complexity Low_complexity 1 42 0 876 206 11 17 chr13 19269291 19269466 -100475432 + FRAM SINE Alu 1 173 -3 7193 56 8 0 chr13 19269471 19269699 -100475199 + L1PA7 LINE L1 4771 4996 -1158 2333 64 0 48 chr13 19269699 19270010 -100474888 + AluY SINE Alu 1 296 -15 7193 56 8 0 chr13 19270010 19271162 -100473736 + L1PA7 LINE L1 4996 6154 0 2393 83 0 13 chr13 19271167 19271468 -100473430 + AluSp SINE Alu 1 297 -16 216 273 57 23 chr13 19271763 19271851 -100473047 + L2 LINE L2 1177 1267 -2047 25 0 0 0 chr13 19271851 19271876 -100473022 + AT_rich Low_complexity Low_complexity 1 25 0 7667 25 1 225 chr13 19271876 19273250 -100471648 - SVA Other Other 0 1386 321 2392 145 75 91 chr13 19273350 19273833 -100471065 + Charlie1 DNA MER1_type 2138 2610 -151 1535 184 3 51 chr13 19273833 19274018 -100470880 - AluJo SINE Alu -12 300 135 2231 90 3 17 chr13 19274018 19274317 -100470581 + AluY SINE Alu 1 295 -16 1535 184 3 51 chr13 19274317 19274446 -100470452 - AluJo SINE Alu -177 135 1 2392 145 75 91 chr13 19274446 19274577 -100470321 + Charlie1 DNA MER1_type 2610 2742 -19 199 204 91 0 chr13 19274653 19274697 -100470201 + L2 LINE L2 3263 3310 -3 784 105 26 20 chr13 19275687 19275840 -100469058 + CT-rich Low_complexity Low_complexity 3 156 0 1902 166 3 16 chr13 19275843 19276156 -100468742 - AluJb SINE Alu -3 309 1 209 373 63 24 chr13 19276867 19276993 -100467905 - L2 LINE L2 0 3272 3142 2249 120 3 0 chr13 19277054 19277354 -100467544 + AluSx SINE Alu 1 301 -11 254 143 24 0 chr13 19277469 19277511 -100467387 + L1MC5 LINE L1 7182 7224 -737 21 0 0 0 chr13 19277542 19277563 -100467335 + AT_rich Low_complexity Low_complexity 1 21 0 860 188 24 42 chr13 19277620 19277833 -100467065 + L1MC5 LINE L1 7259 7467 -494 202 182 0 0 chr13 19277864 19277897 -100467001 + (CA)n Simple_repeat Simple_repeat 2 34 0 3812 158 64 97 chr13 19277898 19278822 -100466076 + MER21A LTR ERV1 13 905 -26 225 275 82 48 chr13 19278896 19279165 -100465733 + L1MC5 LINE L1 7502 7779 -182 3624 172 28 38 chr13 19279174 19279936 -100464962 + L1MB8 LINE L1 5374 6127 -51 436 309 85 5 chr13 19280015 19280203 -100464695 + MIR SINE MIR 29 231 -31 2220 127 0 0 chr13 19280230 19280530 -100464368 - AluSx SINE Alu -12 300 1 23 0 0 0 chr13 19281293 19281316 -100463582 + AT_rich Low_complexity Low_complexity 1 23 0 213 301 21 11 chr13 19282601 19282694 -100462204 + MIR SINE MIR 20 113 -149 242 118 97 54 chr13 19283168 19283261 -100461637 + MER63 DNA MER1_type 875 971 -91 2813 165 104 140 chr13 19283261 19283898 -100461000 - L1MC3 LINE L1 -13 7772 7117 287 209 15 15 chr13 19283898 19283965 -100460933 - MLT1F1 LTR MaLR -459 108 42 2813 165 104 140 chr13 19283965 19284314 -100460584 - L1MC3 LINE L1 -668 7117 6757 1440 281 67 25 chr13 19284336 19284931 -100459967 - L1MEc LINE L1 -5746 650 31 513 158 0 0 chr13 19285268 19285350 -100459548 + AluSg/x SINE Alu 218 299 -11 5630 146 44 29 chr13 19285481 19286732 -100458166 - L1MA9 LINE L1 0 6312 5043 306 143 0 0 chr13 19286730 19286779 -100458119 + L1MA9 LINE L1 4989 5037 -1109 * 638 311 65 26 chr13 19286782 19287200 -100457698 + L2 LINE L2 1033 1466 -1848 5072 84 1 3 chr13 19287343 19288012 -100456886 - THE1A-int LTR MaLR -912 668 1 2729 86 11 0 chr13 19288012 19288363 -100456535 - THE1A LTR MaLR 0 355 1 331 244 118 16 chr13 19288384 19288511 -100456387 - L2 LINE L2 -940 2374 2235 2190 168 7 30 chr13 19288638 19289042 -100455856 + MSTD LTR MaLR 2 396 0 831 216 52 43 chr13 19289269 19289499 -100455399 - MLT1A1 LTR MaLR 0 365 134 296 95 24 0 chr13 19289499 19289541 -100455357 - MLT1A1 LTR MaLR 0 457 415 1449 83 0 0 chr13 19289541 19289734 -100455164 + L1MA2 LINE L1 6112 6304 0 1165 180 50 116 chr13 19289754 19290116 -100454782 - MLT1A1 LTR MaLR -25 340 3 2846 192 33 6 chr13 19290132 19290652 -100454246 - MLT1A1-int LTR MaLR -6 1729 1196 1025 218 92 23 chr13 19290654 19290916 -100453982 - MLT2B3 LTR ERVL -237 317 38 419 171 12 37 chr13 19290947 19291029 -100453869 - MLT2B3 LTR ERVL -472 82 3 * 912 121 7 7 chr13 19291029 19291169 -100453729 - MLT1A1 LTR MaLR -225 140 1 2207 109 3 13 chr13 19291314 19291618 -100453280 - AluSx SINE Alu -11 301 1 918 198 0 0 chr13 19291678 19291840 -100453058 - FAM SINE Alu -13 162 1 21 36 0 0 chr13 19291963 19291991 -100452907 + AT_rich Low_complexity Low_complexity 1 28 0 327 311 0 0 chr13 19292359 19292449 -100452449 - L1MC4 LINE L1 -1339 6703 6614 204 217 0 0 chr13 19292461 19292507 -100452391 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 233 0 17 chr13 19292510 19292570 -100452328 - L1MCa LINE L1 -4362 2064 2006 260 167 93 0 chr13 19292615 19292669 -100452229 - L1MCa LINE L1 -4362 2064 2006 567 212 24 12 chr13 19292680 19292845 -100452053 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 232 200 0 0 chr13 19292852 19292907 -100451991 - L1MC4 LINE L1 -1339 6703 6649 326 292 0 0 chr13 19292934 19293023 -100451875 - L1MC4 LINE L1 -1339 6703 6615 250 296 23 0 chr13 19293048 19293136 -100451762 - L1MC4 LINE L1 -1339 6703 6614 238 309 0 0 chr13 19293189 19293278 -100451620 + L1MD3 LINE L1 6612 6668 -1327 254 311 0 15 chr13 19293279 19293411 -100451487 + (TATG)n Simple_repeat Simple_repeat 1 130 0 236 217 0 0 chr13 19293416 19293462 -100451436 + L1MC4 LINE L1 6658 6703 -1339 386 229 0 8 chr13 19293469 19293581 -100451317 + (TA)n Simple_repeat Simple_repeat 2 113 0 2361 80 0 13 chr13 19293581 19293883 -100451015 - AluSq SINE Alu -15 298 1 427 303 89 10 chr13 19293923 19294164 -100450734 - L1ME LINE L1 -301 5869 5613 2620 45 0 13 chr13 19295273 19295584 -100449314 - AluY SINE Alu -4 307 1 540 277 31 67 chr13 19297201 19297425 -100447473 + L1ME3A LINE L1 5691 5906 -264 820 210 112 33 chr13 19297472 19297519 -100447379 + MSTA LTR MaLR 1 43 -385 2240 130 16 24 chr13 19297519 19297896 -100447002 + THE1C LTR MaLR 1 374 -1 820 210 112 33 chr13 19297896 19298062 -100446836 + MSTA LTR MaLR 43 231 -197 * 1176 140 34 0 chr13 19298047 19298225 -100446673 + MSTA LTR MaLR 245 428 0 9752 167 16 4 chr13 19298225 19299854 -100445044 + MSTA-int LTR MaLR 1 1649 -2 1992 148 154 0 chr13 19299862 19300233 -100444665 + MSTA LTR MaLR 1 428 0 248 203 27 0 chr13 19301346 19301420 -100443478 + CT-rich Low_complexity Low_complexity 3 78 0 450 0 0 0 chr13 19301640 19301690 -100443208 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 3473 156 84 90 chr13 19302051 19302498 -100442400 + L1MDa LINE L1 944 1392 -5148 2134 127 0 13 chr13 19302498 19302806 -100442092 + AluSx SINE Alu 1 304 -8 3473 156 84 90 chr13 19302806 19302827 -100442071 + L1MDa LINE L1 1392 1412 -5128 2268 107 0 0 chr13 19302827 19303127 -100441771 + AluSc SINE Alu 1 300 -9 3473 156 84 90 chr13 19303127 19303303 -100441595 + L1MDa LINE L1 1412 1588 -4952 1877 101 0 0 chr13 19303303 19303573 -100441325 + AluSg SINE Alu 36 305 0 3473 156 84 90 chr13 19303573 19303855 -100441043 + L1MDa LINE L1 1588 1869 -4671 2478 87 0 0 chr13 19303855 19304154 -100440744 + AluSg SINE Alu 1 299 -11 3473 156 84 90 chr13 19304154 19304249 -100440649 + L1MDa LINE L1 1869 1963 -4577 1752 174 0 0 chr13 19304249 19304577 -100440321 + AluJb SINE Alu 1 328 0 287 238 158 26 chr13 19304737 19304851 -100440047 - MLT1K LTR MaLR -358 230 87 609 239 15 27 chr13 19304942 19305111 -100439787 + L1M4 LINE L1 3455 3623 -2523 2021 127 27 0 chr13 19305111 19305403 -100439495 + AluSx SINE Alu 1 300 -12 609 239 15 27 chr13 19305403 19305455 -100439443 + L1M4 LINE L1 3623 3674 -2472 429 207 35 26 chr13 19305462 19305578 -100439320 - L1ME LINE L1 -374 5792 5676 2313 93 0 3 chr13 19305587 19305889 -100439009 - AluSg SINE Alu -9 301 1 1078 83 0 0 chr13 19305889 19306022 -100438876 - AluSc SINE Alu -176 133 1 1449 202 84 41 chr13 19306022 19306538 -100438360 - L1ME LINE L1 -676 5490 4998 2181 104 0 17 chr13 19306538 19306857 -100438041 + AluSq SINE Alu 1 314 0 1449 202 84 41 chr13 19306857 19306888 -100438010 - L1ME LINE L1 -1168 4998 4970 2521 57 0 0 chr13 19306888 19307185 -100437713 + AluY SINE Alu 1 297 -14 1449 202 84 41 chr13 19307185 19307196 -100437702 - L1ME LINE L1 -1196 4970 4961 2607 51 0 13 chr13 19307196 19307510 -100437388 + AluY SINE Alu 2 311 0 963 114 0 0 chr13 19307928 19308059 -100436839 + AluSg/x SINE Alu 162 292 -18 1253 211 29 76 chr13 19308062 19308206 -100436692 - L1ME LINE L1 -1214 4932 4783 1793 145 9 52 chr13 19308206 19308530 -100436368 - AluJb SINE Alu -2 310 1 1253 211 29 76 chr13 19308530 19308765 -100436133 - L1ME LINE L1 -1363 4783 4571 1717 143 48 0 chr13 19308765 19309037 -100435861 + AluJb SINE Alu 1 285 -27 2816 240 79 9 chr13 19309056 19309270 -100435628 - L1ME LINE L1 -2047 4099 3901 243 0 0 0 chr13 19309270 19309297 -100435601 + (TG)n Simple_repeat Simple_repeat 1 27 0 2816 240 79 9 chr13 19309297 19309994 -100434904 - L1ME LINE L1 -2245 3901 3124 2215 93 3 42 chr13 19310043 19310408 -100434490 + AluSp SINE Alu 1 313 0 2329 85 3 0 chr13 19310436 19310766 -100434132 + AluSp SINE Alu 1 331 0 1507 183 4 11 chr13 19311324 19311586 -100433312 + AluJo SINE Alu 29 288 -24 215 302 115 98 chr13 19312142 19312437 -100432461 + L2 LINE L2 2894 3193 -79 2298 91 30 0 chr13 19316575 19316873 -100428025 + AluSg SINE Alu 1 307 -3 381 259 189 0 chr13 19317398 19317541 -100427357 + MER5B DNA MER1_type 6 175 -3 1463 145 13 4 chr13 19317585 19317813 -100427085 + AluSg/x SINE Alu 83 312 0 415 188 12 0 chr13 19317841 19317926 -100426972 - MER5A DNA MER1_type -84 105 20 353 258 98 8 chr13 19318451 19318583 -100426315 + MLT1I LTR MaLR 266 409 0 2330 133 80 15 chr13 19318806 19319206 -100425692 + MSTA LTR MaLR 1 426 -2 247 247 84 48 chr13 19320540 19320706 -100424192 - L1ME4a LINE L1 -11 6110 5939 450 312 201 26 chr13 19321007 19321395 -100423503 - L1ME4a LINE L1 -357 5813 5355 576 263 65 11 chr13 19321673 19321859 -100423039 + MIR SINE MIR 61 256 -6 1516 175 7 52 chr13 19322411 19322720 -100422178 - AluJo SINE Alu -17 295 1 25 0 0 0 chr13 19322895 19322920 -100421978 + AT_rich Low_complexity Low_complexity 1 25 0 872 241 82 53 chr13 19323332 19323672 -100421226 + MLT1G1 LTR MaLR 14 363 -232 301 242 45 0 chr13 19323710 19323776 -100421122 + MLT1G1 LTR MaLR 510 578 -12 2032 157 3 3 chr13 19325227 19325539 -100419359 - AluJb SINE Alu 0 312 1 204 116 93 0 chr13 19325661 19325704 -100419194 - L2 LINE L2 0 3313 3267 21 36 0 0 chr13 19325784 19325812 -100419086 + AT_rich Low_complexity Low_complexity 1 28 0 2401 86 3 0 chr13 19326603 19326905 -100417993 - AluY SINE Alu -8 303 1 536 278 52 32 chr13 19327798 19328050 -100416848 - MIR SINE MIR -1 261 5 319 250 35 59 chr13 19328632 19328772 -100416126 - MIR SINE MIR -55 153 14 446 250 196 0 chr13 19330017 19330165 -100414733 - MIR SINE MIR -61 201 25 412 209 146 0 chr13 19330229 19330339 -100414559 + MER103 DNA DNA 3 128 -38 345 285 7 35 chr13 19330690 19330834 -100414064 - MIR SINE MIR -56 206 67 697 226 6 24 chr13 19331121 19331289 -100413609 + L1MA9 LINE L1 3549 3713 -2433 7665 33 0 0 chr13 19331456 19332981 -100411917 - L1PA4 LINE L1 -3 6152 4629 3524 156 53 3 chr13 19332983 19333624 -100411274 + L1MA9 LINE L1 3697 4369 -1777 1244 167 27 0 chr13 19333619 19333841 -100411057 + L1MA9 LINE L1 5561 5788 -524 * 224 219 31 16 chr13 19333841 19333905 -100410993 + (TATATG)n Simple_repeat Simple_repeat 3 67 0 2997 134 27 17 chr13 19333930 19334453 -100410445 + L1MA9 LINE L1 5763 6290 -22 221 281 0 18 chr13 19335075 19335132 -100409766 + GA-rich Low_complexity Low_complexity 1 56 0 333 0 0 0 chr13 19335496 19335533 -100409365 + (TG)n Simple_repeat Simple_repeat 1 37 0 255 31 0 0 chr13 19335532 19335564 -100409334 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 649 221 126 26 chr13 19335863 19336053 -100408845 + MIR SINE MIR 36 244 -18 413 299 34 0 chr13 19337067 19337214 -100407684 + MIR SINE MIR 69 220 -42 210 229 0 0 chr13 19337839 19337887 -100407011 + L2 LINE L2 3223 3270 -2 188 93 186 0 chr13 19338409 19338452 -100406446 - MIR SINE MIR -96 166 116 2490 87 0 0 chr13 19338676 19338986 -100405912 - AluSg SINE Alu 0 310 1 22 35 0 0 chr13 19339115 19339144 -100405754 + AT_rich Low_complexity Low_complexity 1 29 0 1899 106 0 109 chr13 19339421 19339760 -100405138 + AluSc SINE Alu 3 304 -5 685 234 156 29 chr13 19339960 19340165 -100404733 - MIR SINE MIR -21 241 11 25 0 0 0 chr13 19341242 19341267 -100403631 + GC_rich Low_complexity Low_complexity 1 25 0 2191 184 68 0 chr13 19344992 19345377 -100399521 - LTR57 LTR ERVL 0 411 1 197 321 19 0 chr13 19345552 19345605 -100399293 - L2 LINE L2 -81 3191 3138 1278 219 4 0 chr13 19345895 19346141 -100398757 + AluJo SINE Alu 39 285 -27 2209 100 7 0 chr13 19346572 19346916 -100397982 + AluSq SINE Alu 1 346 0 211 326 0 35 chr13 19347254 19347340 -100397558 + L2 LINE L2 3190 3272 0 311 277 152 0 chr13 19347519 19347631 -100397267 + MIR SINE MIR 124 252 -10 464 280 74 16 chr13 19348057 19348246 -100396652 + L1ME LINE L1 5615 5814 -307 22 0 0 0 chr13 19348284 19348306 -100396592 + AT_rich Low_complexity Low_complexity 1 22 0 2486 81 0 0 chr13 19348306 19348616 -100396282 - AluY SINE Alu -1 310 1 585 226 39 13 chr13 19348745 19348762 -100396136 - L1MA10 LINE L1 0 6334 6318 2500 218 50 23 chr13 19348762 19348912 -100395986 - L1ME2 LINE L1 -9 6155 6010 297 0 0 0 chr13 19348912 19348945 -100395953 + (CA)n Simple_repeat Simple_repeat 2 34 0 2500 218 50 23 chr13 19348945 19349400 -100395498 - L1ME2 LINE L1 -154 6010 5534 277 250 125 11 chr13 19349498 19349586 -100395312 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 19349844 19349867 -100395031 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 19351033 19351055 -100393843 + AT_rich Low_complexity Low_complexity 1 22 0 2150 122 14 0 chr13 19351130 19351426 -100393472 - AluSx SINE Alu -12 300 1 349 259 12 0 chr13 19351573 19351658 -100393240 + MIR SINE MIR 56 141 -121 1034 133 24 30 chr13 19351776 19351975 -100392923 + AluSg/x SINE Alu 133 312 0 331 259 0 86 chr13 19352046 19352162 -100392736 + MIR SINE MIR 87 192 -70 666 158 62 159 chr13 19353304 19353416 -100391482 + L1M4 LINE L1 5089 5210 -1034 2248 86 14 0 chr13 19353416 19353757 -100391141 + AluSp SINE Alu 2 346 0 666 158 62 159 chr13 19353757 19353845 -100391053 + L1M4 LINE L1 5210 5305 -939 2310 103 0 0 chr13 19353845 19354163 -100390735 + AluSq SINE Alu 1 313 0 666 158 62 159 chr13 19354163 19354217 -100390681 + L1M4 LINE L1 5305 5363 -881 1952 155 7 0 chr13 19354217 19354514 -100390384 + AluSx SINE Alu 1 299 -13 666 158 62 159 chr13 19354514 19354525 -100390373 + L1M4 LINE L1 5363 5373 -871 2214 105 3 16 chr13 19354525 19354829 -100390069 + AluSx SINE Alu 11 310 -2 666 158 62 159 chr13 19354829 19354932 -100389966 + L1M4 LINE L1 5373 5428 -816 6168 128 27 44 chr13 19355027 19356072 -100388826 - L1PA15 LINE L1 0 6165 5118 1980 121 10 13 chr13 19356072 19356370 -100388528 - AluSq SINE Alu -16 297 1 6168 128 27 44 chr13 19356370 19356558 -100388340 - L1PA15 LINE L1 -1047 5118 4928 26 30 0 0 chr13 19357229 19357262 -100387636 + AT_rich Low_complexity Low_complexity 1 33 0 924 280 147 18 chr13 19357428 19357465 -100387433 - L1MC4a LINE L1 -605 5557 5526 189 94 0 0 chr13 19357465 19357497 -100387401 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 924 280 147 18 chr13 19357497 19358100 -100386798 - L1MC4a LINE L1 -636 5526 5186 317 222 161 61 chr13 19358105 19358285 -100386613 - HAL1 LINE L1 -1 2506 2309 392 167 0 13 chr13 19358310 19358388 -100386510 - HAL1 LINE L1 -302 2205 2129 1567 188 65 0 chr13 19358404 19358696 -100386202 - AluJo SINE Alu -1 311 1 21 36 0 0 chr13 19359094 19359122 -100385776 + AT_rich Low_complexity Low_complexity 1 28 0 11437 42 4 3 chr13 19359347 19361438 -100383460 - L1PA4 LINE L1 -5 6150 4055 318 67 0 0 chr13 19361847 19361892 -100383006 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1938 252 54 23 chr13 19361949 19362696 -100382202 - L1MC4 LINE L1 -139 7903 6884 * 3668 250 69 50 chr13 19362680 19363569 -100381329 - L1MC4 LINE L1 -1 8041 7113 1700 179 0 10 chr13 19363569 19363860 -100381038 - AluJb SINE Alu -24 288 1 3668 250 69 50 chr13 19363860 19364438 -100380460 - L1MC4 LINE L1 -929 7113 6547 1400 130 84 0 chr13 19364447 19364685 -100380213 - Tigger2 DNA MER2_type -10 2708 2451 843 204 91 0 chr13 19364739 19364925 -100379973 - Tigger2 DNA MER2_type -1961 757 555 6151 150 20 35 chr13 19364927 19366436 -100378462 + L1MA3 LINE L1 4126 5636 -669 3837 120 31 55 chr13 19366617 19367292 -100377606 + L1MA3 LINE L1 5641 6299 -6 1272 187 5 0 chr13 19367303 19367517 -100377381 - Tigger2 DNA MER2_type -2155 563 349 21 36 0 0 chr13 19367517 19367545 -100377353 + AT_rich Low_complexity Low_complexity 1 28 0 444 271 25 0 chr13 19368934 19369056 -100375842 + L1M4 LINE L1 4259 4383 -1763 1825 177 3 16 chr13 19369056 19369372 -100375526 + AluJb SINE Alu 1 312 0 1824 240 17 2 chr13 19369374 19369393 -100375505 - L1M4 LINE L1 -1278 4868 4851 1730 171 3 3 chr13 19369393 19369685 -100375213 + AluJo SINE Alu 1 292 -20 1824 240 17 2 chr13 19369685 19370132 -100374766 - L1M4 LINE L1 -1295 4851 4395 1021 168 25 20 chr13 19370135 19370332 -100374566 - AluJo SINE Alu -25 287 90 707 123 0 0 chr13 19370381 19370487 -100374411 + MLT2B3 LTR ERVL 1 106 -448 2256 56 70 0 chr13 19372149 19372436 -100372462 - LTR8 LTR ERV1 -384 307 1 1601 74 32 9 chr13 19372436 19372652 -100372246 - HUERS-P1 LTR ERV1 0 6263 6043 356 298 79 0 chr13 19373615 19373729 -100371169 - L2 LINE L2 -1 3312 3190 1647 185 4 0 chr13 19374817 19375093 -100369805 - L1PB4 LINE L1 -12 6144 5868 1961 168 7 3 chr13 19375543 19375852 -100369046 - AluSx SINE Alu -2 310 1 24 32 0 0 chr13 19376579 19376610 -100368288 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr13 19376653 19376687 -100368211 + AT_rich Low_complexity Low_complexity 1 34 0 298 301 48 0 chr13 19377039 19377142 -100367756 - Charlie8 DNA MER1_type -2275 142 35 1307 214 176 8 chr13 19378093 19378491 -100366407 - MLT1C LTR MaLR -2 465 1 1565 179 71 24 chr13 19378492 19378832 -100366066 - MLT1C-int LTR MaLR -1 1370 1015 295 234 64 53 chr13 19380153 19380247 -100364651 + L2 LINE L2 3177 3271 -1 24 32 0 0 chr13 19380883 19380914 -100363984 + AT_rich Low_complexity Low_complexity 1 31 0 394 344 78 9 chr13 19381214 19381432 -100363466 + MIR SINE MIR 20 252 -10 378 305 85 17 chr13 19381658 19381835 -100363063 - MIR SINE MIR 0 262 74 219 333 92 0 chr13 19381836 19381923 -100362975 - MIR SINE MIR 0 262 168 21 36 0 0 chr13 19381986 19382014 -100362884 + AT_rich Low_complexity Low_complexity 1 28 0 2484 63 0 7 chr13 19382014 19382313 -100362585 + AluSx SINE Alu 1 297 -15 810 136 8 15 chr13 19383119 19383251 -100361647 - FLAM_C SINE Alu -1 142 12 4183 85 60 21 chr13 19383463 19383914 -100360984 - L1MA2 LINE L1 0 6304 5821 2009 128 16 16 chr13 19383914 19384218 -100360680 - AluSc SINE Alu -5 304 1 4183 85 60 21 chr13 19384218 19384387 -100360511 - L1MA2 LINE L1 -483 5821 5660 504 198 90 9 chr13 19384521 19384632 -100360266 - L2 LINE L2 -3 3310 3191 182 378 16 0 chr13 19384730 19384857 -100360041 - MIR SINE MIR -114 148 20 978 200 88 19 chr13 19384984 19385244 -100359654 - L1ME1 LINE L1 -25 6141 5864 1561 150 46 107 chr13 19385607 19385973 -100358925 - MER2 DNA MER2_type 0 344 1 271 118 97 65 chr13 19387670 19387763 -100357135 + MIR SINE MIR 112 207 -55 462 195 163 8 chr13 19389502 19389625 -100355273 + MER5A DNA MER1_type 48 189 0 207 327 37 28 chr13 19389687 19389794 -100355104 - MIR SINE MIR -148 114 7 1857 169 14 0 chr13 19390936 19391231 -100353667 + AluJb SINE Alu 1 299 -13 554 279 32 36 chr13 19391236 19391487 -100353411 - MLT1J2 LTR MaLR -200 250 1 1927 329 77 39 chr13 19392803 19395367 -100349531 + HERVL LTR ERVL 1469 4189 -1465 22 0 0 0 chr13 19395373 19395395 -100349503 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr13 19395563 19395599 -100349299 + (TG)n Simple_repeat Simple_repeat 1 36 0 2049 160 24 79 chr13 19395697 19395848 -100349050 + MLT1C LTR MaLR 36 194 -273 2224 129 0 7 chr13 19395848 19396158 -100348740 + AluSg SINE Alu 1 308 -2 2049 160 24 79 chr13 19396158 19396463 -100348435 + MLT1C LTR MaLR 194 467 0 1835 185 26 11 chr13 19396491 19396870 -100348028 - L1MA9 LINE L1 0 6312 5928 5922 162 51 11 chr13 19396872 19398017 -100346881 - L1MA9 LINE L1 -461 5851 4605 2117 141 7 0 chr13 19398017 19398322 -100346576 - AluSx SINE Alu -5 307 1 5922 162 51 11 chr13 19398322 19398931 -100345967 - L1MA9 LINE L1 -1707 4605 4022 656 181 49 14 chr13 19399155 19399299 -100345599 + L1PA7 LINE L1 6006 6154 0 213 292 62 0 chr13 19399353 19399418 -100345480 + MIR SINE MIR 77 145 -117 3042 157 16 53 chr13 19399460 19400105 -100344793 + L1MB3 LINE L1 5284 5904 -279 1589 123 7 45 chr13 19402780 19403072 -100341826 + L1MB3 LINE L1 5894 6174 -9 532 299 51 42 chr13 19404033 19404250 -100340648 + MIR SINE MIR 16 234 -28 198 0 0 0 chr13 19404250 19404272 -100340626 + (GA)n Simple_repeat Simple_repeat 2 23 0 218 171 0 0 chr13 19404355 19404390 -100340508 + (CAT)n Simple_repeat Simple_repeat 2 36 0 392 292 28 14 chr13 19405167 19405311 -100339587 - MIR SINE MIR -8 254 109 267 261 43 22 chr13 19405944 19406036 -100338862 + L2 LINE L2 2266 2359 -955 352 321 169 50 chr13 19406430 19406885 -100338013 + L2 LINE L2 2236 2744 -570 1592 111 111 0 chr13 19406900 19407162 -100337736 + MLT2D LTR ERVL 76 366 -48 180 49 98 0 chr13 19407191 19407232 -100337666 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 1016 262 95 11 chr13 19407273 19407620 -100337278 - MLT1J LTR MaLR -135 376 1 377 319 28 14 chr13 19409563 19409707 -100335191 + MIR3 SINE MIR 33 178 -30 370 357 51 5 chr13 19410269 19410465 -100334433 - L2 LINE L2 -3 3310 3106 451 271 170 37 chr13 19411024 19411242 -100333656 - L2 LINE L2 -610 2704 2458 1012 263 89 13 chr13 19411535 19411851 -100333047 - LTR16A LTR ERVL 0 450 111 347 270 111 16 chr13 19412587 19412776 -100332122 - LTR16C LTR ERVL 0 491 285 230 157 196 0 chr13 19413291 19413342 -100331556 + MLT1J1 LTR MaLR 1 61 -385 309 250 132 62 chr13 19413461 19413605 -100331293 + MLT1J2 LTR MaLR 263 416 -34 292 266 237 7 chr13 19413652 19413789 -100331109 - MIR SINE MIR -63 145 14 1408 264 60 28 chr13 19414192 19414757 -100330141 + MLT1L LTR MaLR 33 615 0 262 346 45 6 chr13 19415069 19415225 -100329673 + L1ME LINE L1 5473 5634 -487 212 250 18 0 chr13 19416040 19416096 -100328802 + CT-rich Low_complexity Low_complexity 1 57 0 252 248 0 25 chr13 19416654 19416775 -100328123 + (TAA)n Simple_repeat Simple_repeat 1 118 0 255 200 11 111 chr13 19416858 19416948 -100327950 - MIR SINE MIR -100 162 82 266 306 105 0 chr13 19417228 19417352 -100327546 - MIR SINE MIR -54 208 72 239 209 30 15 chr13 19417434 19417501 -100327397 + CT-rich Low_complexity Low_complexity 3 70 0 1127 173 10 19 chr13 19417604 19417812 -100327086 - AluJo SINE Alu -106 206 1 472 279 53 16 chr13 19418597 19418659 -100326239 + MIR SINE MIR 16 74 -188 1795 141 50 7 chr13 19418659 19418958 -100325940 - AluSx SINE Alu 0 312 1 472 279 53 16 chr13 19418958 19419087 -100325811 + MIR SINE MIR 74 216 -46 508 314 34 64 chr13 19419124 19419328 -100325570 - MIR SINE MIR -3 259 62 327 48 0 0 chr13 19419433 19419475 -100325423 + 5S rRNA rRNA 1 42 -79 256 202 226 12 chr13 19419478 19419562 -100325336 - MIR SINE MIR -96 166 65 323 229 12 169 chr13 19419571 19419737 -100325161 - MIR SINE MIR -6 256 117 429 287 113 5 chr13 19420645 19420840 -100324058 + MIR SINE MIR 24 239 -23 205 274 74 42 chr13 19422714 19422809 -100322089 + MIR SINE MIR 113 210 -52 3930 123 76 8 chr13 19422910 19423249 -100321649 - L1MA8 LINE L1 -3 6288 5950 1348 257 127 9 chr13 19423249 19423783 -100321115 - L1PA6 LINE L1 -235 5919 5323 1064 154 9 23 chr13 19424068 19424288 -100320610 - MER47A DNA MER2_type -149 217 1 2263 100 0 3 chr13 19424515 19424805 -100320093 + AluSq SINE Alu 1 289 -24 3440 182 10 22 chr13 19426427 19426781 -100318117 - L1MB3 LINE L1 -10 6173 5829 2398 68 3 3 chr13 19426781 19427096 -100317802 - AluY SINE Alu 0 311 1 3440 182 10 22 chr13 19427096 19427412 -100317486 - L1MB3 LINE L1 -354 5829 5511 188 235 186 59 chr13 19427715 19427817 -100317081 + MIR SINE MIR 41 155 -107 2288 230 107 22 chr13 19428362 19428920 -100315978 - L1ME3A LINE L1 -76 6094 5454 2422 100 0 0 chr13 19428920 19429230 -100315668 - AluY SINE Alu -1 310 1 2288 230 107 22 chr13 19429230 19429428 -100315470 - L1ME3A LINE L1 -716 5454 5274 411 225 144 56 chr13 19430308 19430468 -100314430 - L2 LINE L2 -1 3312 3139 224 149 21 0 chr13 19431367 19431414 -100313484 + G-rich Low_complexity Low_complexity 1 48 0 2310 81 0 3 chr13 19431792 19432116 -100312782 + AluSg SINE Alu 1 323 0 1676 149 0 59 chr13 19432529 19432673 -100312225 + AluJo SINE Alu 1 121 -191 2026 102 0 39 chr13 19432673 19432956 -100311942 + AluSg SINE Alu 20 291 -19 1676 149 0 59 chr13 19432956 19433100 -100311798 + AluJo SINE Alu 121 272 -40 207 0 0 0 chr13 19433100 19433123 -100311775 + (TC)n Simple_repeat Simple_repeat 2 24 0 189 171 0 0 chr13 19433123 19433158 -100311740 + (CA)n Simple_repeat Simple_repeat 2 36 0 28 48 0 0 chr13 19433158 19433200 -100311698 + AT_rich Low_complexity Low_complexity 1 42 0 456 263 53 41 chr13 19433311 19433482 -100311416 - MER5B DNA MER1_type -2 176 4 4254 142 25 0 chr13 19433510 19434200 -100310698 + L1MC1 LINE L1 5622 6328 -5 13112 117 42 7 chr13 19438230 19438546 -100306352 + Tigger1 DNA MER2_type 1 305 -2113 204 40 0 0 chr13 19438546 19438571 -100306327 + (TC)n Simple_repeat Simple_repeat 2 26 0 13112 117 42 7 chr13 19438571 19440370 -100304528 + Tigger1 DNA MER2_type 305 2199 -219 1109 209 45 29 chr13 19440710 19441150 -100303748 - MER74A LTR ERVL -13 545 1 438 259 9 0 chr13 19441275 19441387 -100303511 - MLT2B1 LTR ERVL -407 113 1 887 254 44 20 chr13 19441948 19442196 -100302702 - L1MDa LINE L1 -5623 917 664 723 162 6 22 chr13 19442198 19442364 -100302534 + MSTC LTR MaLR 4 150 -215 274 274 63 11 chr13 19442483 19442578 -100302320 - HAL1b LINE L1 -56 1292 1193 347 263 50 0 chr13 19442607 19442687 -100302211 - L2 LINE L2 -4 3268 3185 1917 149 0 3 chr13 19442691 19442980 -100301918 + AluJb SINE Alu 1 288 -24 2079 119 36 3 chr13 19443056 19443358 -100301540 + AluSx SINE Alu 1 312 0 356 240 97 30 chr13 19443431 19443663 -100301235 + MER109 Unknown Unknown 2 1293 -1139 2492 61 0 26 chr13 19443739 19444050 -100300848 + AluY SINE Alu 1 303 -8 366 277 121 14 chr13 19444296 19444437 -100300461 + MER109 Unknown Unknown 650 805 -1627 1694 167 31 3 chr13 19444507 19444800 -100300098 + AluJo SINE Alu 1 301 -11 280 114 0 0 chr13 19444809 19444853 -100300045 + L1PA16 LINE L1 5940 5983 -183 642 153 18 9 chr13 19444854 19444965 -100299933 + L1PA16 LINE L1 6033 6144 -22 1024 111 0 21 chr13 19444972 19445116 -100299782 + AluJb SINE Alu 1 141 -171 23 0 0 0 chr13 19445149 19445172 -100299726 + AT_rich Low_complexity Low_complexity 1 23 0 1935 155 24 0 chr13 19445196 19445493 -100299405 + AluSq SINE Alu 1 304 -9 598 161 0 0 chr13 19445727 19445814 -100299084 - 5S rRNA rRNA -32 89 3 1220 146 66 134 chr13 19445860 19445966 -100298932 - MER2 DNA MER2_type -9 336 224 1938 89 16 104 chr13 19445966 19446282 -100298616 + AluSp SINE Alu 1 288 -25 1220 146 66 134 chr13 19446282 19446437 -100298461 - MER2 DNA MER2_type -121 224 102 1786 153 7 0 chr13 19446437 19446711 -100298187 - AluJb SINE Alu -33 279 4 1220 146 66 134 chr13 19446711 19446798 -100298100 - MER2 DNA MER2_type -243 102 11 294 145 81 48 chr13 19446754 19446816 -100298082 + MER2 DNA MER2_type 11 74 -271 * 551 260 98 86 chr13 19446900 19447484 -100297414 + MER109 Unknown Unknown 29 1789 -643 2371 90 0 3 chr13 19447706 19448005 -100296893 - AluSx SINE Alu -14 298 1 2010 115 3 34 chr13 19450155 19450450 -100294448 - AluSx SINE Alu -25 287 2 2026 141 0 0 chr13 19450768 19451066 -100293832 + AluSx SINE Alu 1 298 -14 228 240 147 0 chr13 19453755 19453830 -100291068 + MLT1E LTR MaLR 494 579 -14 1685 155 3 59 chr13 19453954 19454276 -100290622 - AluJb SINE Alu -8 304 1 239 220 40 0 chr13 19454942 19454992 -100289906 - AluJb SINE Alu -175 127 76 1812 176 20 20 chr13 19455192 19455498 -100289400 - AluJb SINE Alu -6 306 1 2344 79 7 3 chr13 19455726 19456031 -100288867 - AluY SINE Alu -5 306 1 2281 104 0 0 chr13 19456031 19456330 -100288568 - AluSg SINE Alu -11 299 1 2278 92 3 3 chr13 19456428 19456723 -100288175 + AluSc SINE Alu 1 295 -14 185 0 40 0 chr13 19456903 19456928 -100287970 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2415 63 0 0 chr13 19456935 19457221 -100287677 - AluY SINE Alu -24 287 2 574 286 84 0 chr13 19457964 19458142 -100286756 - MIR SINE MIR -6 256 64 2566 112 25 6 chr13 19459080 19459436 -100285462 + THE1B LTR MaLR 1 363 -1 497 252 0 41 chr13 19459642 19459765 -100285133 - L2 LINE L2 -4 3309 3192 374 323 132 44 chr13 19459890 19460074 -100284824 + L1MEc LINE L1 117 283 -6113 2199 99 0 53 chr13 19460074 19460397 -100284501 + AluSx SINE Alu 1 306 -6 374 323 132 44 chr13 19460397 19460735 -100284163 + L1MEc LINE L1 283 685 -5711 250 224 20 0 chr13 19460736 19460785 -100284113 + AluJ/monomer SINE Alu 1 50 -251 1277 268 71 72 chr13 19460795 19461063 -100283835 + L1MEc LINE L1 774 1041 -5355 2053 141 0 0 chr13 19461063 19461361 -100283537 + AluSx SINE Alu 1 298 -14 1277 268 71 72 chr13 19461361 19461950 -100282948 + L1MEc LINE L1 1041 1630 -4766 680 286 134 6 chr13 19462045 19462466 -100282432 + L1MEc LINE L1 1128 1618 -4766 2105 134 0 0 chr13 19462466 19462765 -100282133 - AluSx SINE Alu -13 299 1 680 286 134 6 chr13 19462765 19462842 -100282056 + L1MEc LINE L1 1618 1684 -4700 29 60 0 0 chr13 19463246 19463296 -100281602 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr13 19463654 19463679 -100281219 + AT_rich Low_complexity Low_complexity 1 25 0 267 277 69 30 chr13 19463872 19463973 -100280925 - L2 LINE L2 -18 3295 3191 482 370 98 34 chr13 19464114 19464901 -100279997 - L2 LINE L2 -1519 1795 959 561 253 55 93 chr13 19465247 19465504 -100279394 - MER112 DNA MER1_type -6 254 8 400 248 83 110 chr13 19465548 19465766 -100279132 - MER102b DNA MER1_type -13 328 117 804 267 95 18 chr13 19466197 19466523 -100278375 + Tigger8 DNA MER2_type 109 459 -207 1821 188 7 0 chr13 19466534 19466838 -100278060 + AluJo SINE Alu 1 306 -6 527 141 0 13 chr13 19466965 19467043 -100277855 - AluJb SINE Alu -17 295 219 968 121 0 0 chr13 19467051 19467183 -100277715 - AluJb SINE Alu -180 132 1 22 0 0 0 chr13 19467234 19467256 -100277642 + AT_rich Low_complexity Low_complexity 1 22 0 603 172 49 8 chr13 19467397 19467519 -100277379 - FLAM_A SINE Alu -6 136 10 819 182 8 8 chr13 19468013 19468145 -100276753 + FLAM_A SINE Alu 1 132 -1 216 97 0 0 chr13 19469090 19469121 -100275777 + (T)n Simple_repeat Simple_repeat 1 31 0 1946 100 12 0 chr13 19469137 19469388 -100275510 + AluSx SINE Alu 1 254 -58 1998 78 27 0 chr13 19469388 19469644 -100275254 + AluSx SINE Alu 49 312 0 611 101 11 11 chr13 19469678 19469767 -100275131 - AluJ/FLAM SINE Alu -222 90 2 791 264 204 10 chr13 19469847 19470493 -100274405 + L2 LINE L2 2522 3312 -1 235 353 15 0 chr13 19470663 19470731 -100274167 + MER91A DNA MER1_type 13 81 -115 24 32 0 0 chr13 19470877 19470908 -100273990 + AT_rich Low_complexity Low_complexity 1 31 0 220 285 97 62 chr13 19470932 19470979 -100273919 + MIR SINE MIR 11 55 -207 2423 89 0 0 chr13 19470979 19471282 -100273616 - AluY SINE Alu -8 303 1 220 285 97 62 chr13 19471282 19471378 -100273520 + MIR SINE MIR 55 159 -103 2437 64 3 26 chr13 19471400 19471712 -100273186 - AluSc SINE Alu 0 309 5 1622 194 37 13 chr13 19471713 19472206 -100272692 + MER74A LTR ERVL 7 558 0 2189 149 0 0 chr13 19472467 19472775 -100272123 + AluSx SINE Alu 1 308 -4 633 254 53 5 chr13 19472832 19473021 -100271877 - L1M4 LINE L1 -863 5283 5086 783 121 0 3 chr13 19473029 19473260 -100271638 + AluSq SINE Alu 1 300 -13 2064 138 3 0 chr13 19473296 19473601 -100271297 + AluJb SINE Alu 1 306 -6 279 277 76 8 chr13 19473604 19473723 -100271175 + L1MB8 LINE L1 5255 5381 -2427 230 254 97 53 chr13 19473903 19474017 -100270881 - MIR SINE MIR -48 214 96 400 211 39 109 chr13 19474026 19474099 -100270799 - L2 LINE L2 -4 3309 3247 2569 53 0 0 chr13 19474099 19474403 -100270495 + AluY SINE Alu 1 304 -7 400 211 39 109 chr13 19474403 19474457 -100270441 - L2 LINE L2 -66 3247 3191 2109 130 0 13 chr13 19474977 19475292 -100269606 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr13 19475292 19475315 -100269583 + AT_rich Low_complexity Low_complexity 1 23 0 306 245 187 32 chr13 19475319 19475474 -100269424 - HAL1 LINE L1 -4 2503 2325 849 236 81 28 chr13 19475577 19475880 -100269018 - L1MC4a LINE L1 -104 6017 5701 320 206 22 43 chr13 19475835 19475927 -100268971 + L1MB8 LINE L1 5902 5991 -187 * 29 47 0 0 chr13 19476098 19476141 -100268757 + AT_rich Low_complexity Low_complexity 1 43 0 1807 171 10 3 chr13 19476142 19476446 -100268452 + AluJo SINE Alu 1 306 -6 776 165 8 30 chr13 19477095 19477228 -100267670 + FLAM_C SINE Alu 1 130 -3 318 286 68 42 chr13 19478176 19478368 -100266530 - MIR3 SINE MIR -9 199 3 273 270 220 60 chr13 19478609 19478825 -100266073 - L2 LINE L2 -85 3228 2949 2374 94 0 0 chr13 19478825 19479133 -100265765 - AluSx SINE Alu -3 309 2 273 270 220 60 chr13 19479133 19479216 -100265682 - L2 LINE L2 -364 2949 2881 237 245 174 10 chr13 19479217 19479315 -100265583 + L1MC/D LINE L1 5694 5807 -2001 874 150 72 26 chr13 19479369 19479562 -100265336 + LTR54 LTR ERV1 309 510 0 2427 66 0 20 chr13 19479613 19479915 -100264983 + AluY SINE Alu 1 296 -15 24 0 0 0 chr13 19480275 19480299 -100264599 + AT_rich Low_complexity Low_complexity 1 24 0 16265 92 20 1 chr13 19481538 19482167 -100262731 - L1PA7 LINE L1 -5 6464 5848 2044 92 0 26 chr13 19482167 19482438 -100262460 - AluSg SINE Alu -44 266 3 16265 92 20 1 chr13 19482438 19484757 -100260141 - L1PA7 LINE L1 -621 5848 3448 12782 81 21 1 chr13 19484779 19486464 -100258434 - L1PA7 LINE L1 -4734 1727 8 417 301 75 40 chr13 19486540 19486739 -100258159 - MIR3 SINE MIR -1 207 2 327 238 62 0 chr13 19486935 19487015 -100257883 - L2 LINE L2 -5 3308 3224 2294 112 3 0 chr13 19487833 19488138 -100256760 + AluSx SINE Alu 1 306 -6 258 339 36 9 chr13 19488296 19488408 -100256490 + MIR SINE MIR 7 121 -141 22 35 0 0 chr13 19488599 19488628 -100256270 + AT_rich Low_complexity Low_complexity 1 29 0 2458 51 0 35 chr13 19489505 19489817 -100255081 - AluY SINE Alu -10 301 1 229 341 70 31 chr13 19490314 19490443 -100254455 - MIR SINE MIR -73 135 1 408 289 77 58 chr13 19490638 19490846 -100254052 - L3 LINE CR1 0 1577 1366 2311 92 3 13 chr13 19491067 19491373 -100253525 + AluSg SINE Alu 1 303 -7 264 385 49 72 chr13 19491586 19491934 -100252964 - L2 LINE L2 -15 3257 2918 348 252 134 39 chr13 19492159 19492286 -100252612 - L2 LINE L2 0 3313 3175 298 298 95 18 chr13 19492285 19492453 -100252445 + L2 LINE L2 3011 3191 -122 * 2267 115 3 0 chr13 19492573 19492885 -100252013 - AluSq SINE Alu 0 313 1 378 333 53 62 chr13 19493203 19493428 -100251470 - L2 LINE L2 0 3272 3050 482 255 53 55 chr13 19493534 19493812 -100251086 - MIR SINE MIR 0 262 25 1665 147 11 21 chr13 19493837 19494123 -100250775 - AluJb SINE Alu -29 283 1 1896 206 114 39 chr13 19494457 19495002 -100249896 + L1ME3A LINE L1 5583 6168 -2 454 271 119 96 chr13 19495083 19495150 -100249748 - MIR SINE MIR -1 261 197 2200 99 0 3 chr13 19495150 19495458 -100249440 + AluSp SINE Alu 1 307 0 454 271 119 96 chr13 19495458 19495640 -100249258 - MIR SINE MIR -65 197 5 431 244 9 26 chr13 19497166 19497281 -100247617 + MIR SINE MIR 148 260 -2 22 0 0 0 chr13 19497556 19497578 -100247320 + AT_rich Low_complexity Low_complexity 1 22 0 228 105 105 0 chr13 19497864 19497902 -100246996 + L2 LINE L2 2608 2649 -665 469 254 98 40 chr13 19498106 19498279 -100246619 - MIR SINE MIR -70 192 10 2137 129 10 3 chr13 19498540 19498843 -100246055 + AluSx SINE Alu 1 305 -7 26 50 0 0 chr13 19498843 19498883 -100246015 + AT_rich Low_complexity Low_complexity 1 40 0 191 316 18 0 chr13 19499230 19499287 -100245611 + MIR SINE MIR 203 260 -2 2374 74 0 7 chr13 19499574 19499871 -100245027 + AluY SINE Alu 1 295 -16 223 328 25 59 chr13 19501618 19501737 -100243161 + L2 LINE L2 2729 2843 -471 2367 96 0 6 chr13 19501740 19502054 -100242844 - AluSx SINE Alu 0 312 1 193 373 0 15 chr13 19502316 19502383 -100242515 + L2 LINE L2 3121 3186 -86 532 221 81 15 chr13 19502392 19502528 -100242370 - MIR SINE MIR -86 176 32 2244 115 0 3 chr13 19502698 19503002 -100241896 + AluSx SINE Alu 1 303 -9 185 161 0 0 chr13 19503023 19503054 -100241844 + L2 LINE L2 3028 3058 -255 2297 114 0 0 chr13 19503357 19503663 -100241235 - AluSg SINE Alu -2 308 3 2166 111 10 3 chr13 19503726 19504032 -100240866 + AluSg SINE Alu 3 310 0 251 257 57 133 chr13 19504302 19504512 -100240386 + MLT1L LTR MaLR 200 393 -222 3450 211 90 48 chr13 19504521 19506114 -100238784 - L1MDa LINE L1 -4642 1898 10 1579 222 99 60 chr13 19506116 19506262 -100238636 - L1ME LINE L1 -350 5816 5677 2184 113 17 14 chr13 19506262 19506616 -100238282 - THE1A LTR MaLR 0 355 1 1579 222 99 60 chr13 19506616 19507311 -100237587 - L1ME LINE L1 -489 5677 4988 1914 142 3 23 chr13 19507311 19507477 -100237421 - AluSx SINE Alu -12 300 141 2231 94 0 10 chr13 19507477 19507775 -100237123 - AluY SINE Alu -14 297 3 1914 142 3 23 chr13 19507775 19507910 -100236988 - AluSx SINE Alu -171 141 5 1579 222 99 60 chr13 19507910 19508266 -100236632 - L1ME LINE L1 -1178 4988 4647 677 189 0 0 chr13 19508275 19508386 -100236512 - FLAM_A SINE Alu -12 130 20 2337 75 0 0 chr13 19508481 19508761 -100236137 + AluY SINE Alu 1 280 -31 859 216 165 27 chr13 19508855 19509230 -100235668 - L1ME LINE L1 -1540 4606 4180 282 73 0 0 chr13 19509233 19509274 -100235624 + (TG)n Simple_repeat Simple_repeat 1 41 0 348 287 25 16 chr13 19509294 19509416 -100235482 - L1MC4a LINE L1 -1210 6598 6476 1228 291 68 13 chr13 19509884 19510388 -100234510 - L1MC4a LINE L1 -361 5803 5317 1640 204 71 22 chr13 19510505 19510955 -100233943 + L1MC4 LINE L1 6821 7292 -750 445 300 123 0 chr13 19510964 19511134 -100233764 - LTR16A LTR ERVL -5 445 255 1953 199 146 39 chr13 19511311 19511455 -100233443 + L1MC4 LINE L1 7299 7426 -616 13661 118 24 74 chr13 19511455 19512841 -100232057 + Tigger1 DNA MER2_type 2 1206 -1212 2431 71 0 0 chr13 19512841 19513135 -100231763 - AluY SINE Alu -16 295 2 13661 118 24 74 chr13 19513135 19514291 -100230607 + Tigger1 DNA MER2_type 1206 2418 0 1953 199 146 39 chr13 19514291 19514363 -100230535 + L1MC4 LINE L1 7426 7489 -553 1687 152 0 70 chr13 19514363 19514694 -100230204 + AluJo SINE Alu 1 310 0 1953 199 146 39 chr13 19514694 19514932 -100229966 + L1MC4 LINE L1 7489 7700 -342 2218 123 0 0 chr13 19514932 19515242 -100229656 + AluSx SINE Alu 3 312 0 1953 199 146 39 chr13 19515242 19515456 -100229442 + L1MC4 LINE L1 7700 8042 0 2173 110 3 7 chr13 19515476 19515775 -100229123 + AluSx SINE Alu 4 301 -11 180 0 0 0 chr13 19515775 19515795 -100229103 + (TG)n Simple_repeat Simple_repeat 2 21 0 420 294 79 68 chr13 19515963 19516052 -100228846 - L1MC4a LINE L1 -1313 4833 4746 524 133 36 0 chr13 19516052 19516135 -100228763 - L1MC1 LINE L1 -9 6324 6239 420 294 79 68 chr13 19516135 19516523 -100228375 - L1MC4a LINE L1 -1400 4746 4364 2297 68 3 56 chr13 19516523 19516847 -100228051 - AluY SINE Alu -4 307 1 420 294 79 68 chr13 19516847 19517339 -100227559 - L1MC4a LINE L1 -1782 4364 3852 2329 107 0 0 chr13 19517618 19517918 -100226980 + AluSx SINE Alu 1 300 -12 205 311 98 30 chr13 19518763 19518895 -100226003 + MIR SINE MIR 120 260 -2 1994 121 25 0 chr13 19519026 19519308 -100225590 + AluSx SINE Alu 1 289 -23 211 247 26 26 chr13 19519904 19519919 -100224979 + (TA)n Simple_repeat Simple_repeat 1 15 -62 1818 167 0 3 chr13 19519919 19520206 -100224692 + AluJo SINE Alu 1 286 -26 211 247 26 26 chr13 19520206 19520267 -100224631 + (TA)n Simple_repeat Simple_repeat 14 77 0 24 0 0 0 chr13 19520357 19520381 -100224517 + AT_rich Low_complexity Low_complexity 1 24 0 270 367 83 35 chr13 19520389 19520618 -100224280 + MIR SINE MIR 9 248 -14 1089 235 202 19 chr13 19520829 19521426 -100223472 - L2 LINE L2 0 3313 2620 244 175 35 0 chr13 19521440 19521497 -100223401 - L1ME4a LINE L1 -81 6040 5982 26 0 0 0 chr13 19521715 19521741 -100223157 + AT_rich Low_complexity Low_complexity 1 26 0 547 318 49 26 chr13 19522023 19522290 -100222608 - L2 LINE L2 -453 2861 2589 216 0 0 0 chr13 19522425 19522449 -100222449 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 1115 143 20 5 chr13 19523062 19523258 -100221640 + L1MB2 LINE L1 5944 6142 -29 1955 114 15 0 chr13 19523258 19523530 -100221368 - AluY SINE Alu -35 276 1 309 169 84 28 chr13 19523530 19523601 -100221297 + LTR40a LTR ERVL 22 96 -423 1012 98 147 18 chr13 19523602 19523765 -100221133 + AluSg SINE Alu 17 200 -110 1502 229 43 24 chr13 19523782 19524158 -100220740 + LTR40a LTR ERVL 137 519 0 1867 127 53 13 chr13 19524239 19524539 -100220359 - AluSx SINE Alu 0 312 1 413 325 128 42 chr13 19524744 19525061 -100219837 - L1M4 LINE L1 -1067 5079 4733 2266 83 0 0 chr13 19525089 19525366 -100219532 - AluY SINE Alu -18 293 17 352 287 56 84 chr13 19525437 19525831 -100219067 + MLT1I LTR MaLR 19 401 -8 318 308 89 14 chr13 19525838 19526052 -100218846 - L1M4 LINE L1 -1559 4587 4358 333 263 19 58 chr13 19526091 19526247 -100218651 - HAL1b LINE L1 -12 1336 1187 359 340 30 11 chr13 19526269 19526534 -100218364 - L1M4 LINE L1 -1797 4349 4080 589 168 117 51 chr13 19528552 19528749 -100216149 - MER63A DNA MER1_type 0 210 1 239 234 0 39 chr13 19529060 19529137 -100215761 + A-rich Low_complexity Low_complexity 2 75 0 253 288 166 31 chr13 19529609 19529772 -100215126 + MIR SINE MIR 56 240 -22 1779 142 38 10 chr13 19529848 19530136 -100214762 - AluJb SINE Alu -16 296 1 201 330 96 52 chr13 19530373 19530718 -100214180 + L2 LINE L2 1351 1710 -1604 2167 98 7 3 chr13 19531427 19531722 -100213176 - AluSg SINE Alu -14 296 1 334 140 35 0 chr13 19531750 19531807 -100213091 - Alu SINE Alu 0 302 244 2378 86 3 0 chr13 19531943 19532245 -100212653 - AluY SINE Alu -8 303 1 249 351 36 40 chr13 19532453 19532675 -100212223 + L2 LINE L2 2844 3064 -208 272 250 60 0 chr13 19533053 19533137 -100211761 - MIR SINE MIR -74 188 100 712 200 145 0 chr13 19533158 19533303 -100211595 + MER58B DNA MER1_type 176 341 0 644 206 201 32 chr13 19533303 19533522 -100211376 + MLT1H LTR MaLR 274 529 -20 30 59 0 0 chr13 19533924 19533975 -100210923 + AT_rich Low_complexity Low_complexity 1 51 0 3338 186 123 29 chr13 19535303 19536267 -100208631 - L1MD1 LINE L1 -11 6231 5129 2136 67 0 7 chr13 19536267 19536536 -100208362 - AluY SINE Alu -10 301 35 3338 186 123 29 chr13 19536536 19536794 -100208104 - L1MD1 LINE L1 -1113 5129 4897 1351 228 27 54 chr13 19536810 19537218 -100207680 - L1MD1 LINE L1 -1755 4391 3995 2323 87 7 13 chr13 19537277 19537586 -100207312 + AluSx SINE Alu 1 307 -5 358 294 30 96 chr13 19537600 19537797 -100207101 + L1MC4a LINE L1 5868 6051 -1757 723 153 59 9 chr13 19537886 19538057 -100206841 - Tigger3(Golem) DNA MER2_type -34 2995 1 2251 68 7 31 chr13 19538359 19538653 -100206245 - AluY SINE Alu -16 295 9 2510 54 0 3 chr13 19538907 19539203 -100205695 - AluY SINE Alu -16 295 1 324 277 39 52 chr13 19539789 19539944 -100204954 - L1MC5 LINE L1 -35 7926 7774 1690 208 82 46 chr13 19540006 19540605 -100204293 - L1ME2 LINE L1 -137 6027 5373 2024 94 0 14 chr13 19541315 19541591 -100203307 + AluSx SINE Alu 1 272 -40 285 146 0 0 chr13 19541592 19541640 -100203258 + (CA)n Simple_repeat Simple_repeat 2 49 0 2079 97 66 3 chr13 19542887 19543175 -100201723 - AluSp SINE Alu -3 310 5 275 335 97 39 chr13 19543214 19543596 -100201302 + L2 LINE L2 1981 2384 -930 1986 198 148 22 chr13 19543669 19544258 -100200640 - L1ME2 LINE L1 -17 6145 5507 1857 185 26 0 chr13 19545532 19545602 -100199296 - L1MD3 LINE L1 -17 7978 7911 1572 138 116 8 chr13 19545602 19545870 -100199028 - AluJb SINE Alu -15 297 1 1857 185 26 0 chr13 19545870 19546150 -100198748 - L1MD3 LINE L1 -84 7911 7619 257 265 0 15 chr13 19546247 19546315 -100198583 - MIR3 SINE MIR -24 184 118 1957 156 195 55 chr13 19546685 19547141 -100197757 + MLT2B1 LTR ERVL 1 520 0 352 226 45 60 chr13 19547483 19547616 -100197282 + MLT1K LTR MaLR 141 271 -317 898 213 80 82 chr13 19548008 19548422 -100196476 - L1MC5 LINE L1 -36 7925 7513 4064 164 76 40 chr13 19548427 19549003 -100195895 - L1MB3 LINE L1 -2 6181 5549 2692 45 3 0 chr13 19549003 19549312 -100195586 - AluY SINE Alu -1 310 1 4064 164 76 40 chr13 19549312 19549735 -100195163 - L1MB3 LINE L1 -634 5549 5143 342 0 0 0 chr13 19549735 19549773 -100195125 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1583 164 0 64 chr13 19549777 19550075 -100194823 - AluJb SINE Alu -33 279 1 979 214 40 40 chr13 19550079 19550355 -100194543 - L1MC5 LINE L1 -436 7525 7250 335 191 0 0 chr13 19551650 19551713 -100193185 - U13 snRNA snRNA -28 76 14 369 332 44 93 chr13 19552426 19552836 -100192062 - L2 LINE L2 -1 3271 2882 469 323 112 50 chr13 19552946 19553448 -100191450 - L2 LINE L2 -746 2568 2036 219 204 102 0 chr13 19553530 19553579 -100191319 - MIR SINE MIR -82 180 127 180 0 0 0 chr13 19554479 19554499 -100190399 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 465 296 192 34 chr13 19556417 19556975 -100187923 - L2 LINE L2 -1226 2088 1443 2466 61 0 0 chr13 19557146 19557442 -100187456 - AluY SINE Alu -13 298 3 795 98 71 0 chr13 19557803 19557915 -100186983 + AluSg/x SINE Alu 177 296 -16 1701 187 10 13 chr13 19558018 19558328 -100186570 - AluJo SINE Alu -3 309 1 281 212 214 3 chr13 19559526 19559608 -100185290 - MIR SINE MIR -93 115 18 * 445 308 123 22 chr13 19559606 19559833 -100185065 - MIR SINE MIR -10 252 3 1597 163 41 37 chr13 19560160 19560454 -100184444 - AluJo SINE Alu -17 295 1 197 402 10 0 chr13 19560714 19560816 -100184082 + L2 LINE L2 772 874 -2440 2329 85 0 31 chr13 19561278 19561596 -100183302 - AluSq SINE Alu 0 313 6 1383 160 122 34 chr13 19562058 19562109 -100182789 - MER2 DNA MER2_type -25 320 275 1638 174 31 7 chr13 19562109 19562402 -100182496 + AluJo SINE Alu 1 300 -12 1383 160 122 34 chr13 19562402 19562644 -100182254 - MER2 DNA MER2_type -70 275 1 404 306 100 31 chr13 19562646 19562937 -100181961 + L2 LINE L2 1884 2194 -1120 1283 81 17 17 chr13 19563247 19563419 -100181479 - AluY SINE Alu -139 172 1 309 26 0 0 chr13 19565524 19565562 -100179336 + (TCTCCC)n Simple_repeat Simple_repeat 1 38 0 6221 63 39 48 chr13 19565562 19567477 -100177421 + SVA Other Other 57 1385 -1 968 243 148 29 chr13 19567492 19567871 -100177027 - MLT1H LTR MaLR -53 496 73 2093 106 46 0 chr13 19567889 19568171 -100176727 - AluSx SINE Alu -15 297 3 535 260 264 21 chr13 19568204 19568492 -100176406 - L2 LINE L2 -691 2623 2266 1921 149 17 14 chr13 19568999 19569295 -100175603 - AluJo SINE Alu -15 297 1 443 122 28 84 chr13 19569867 19569949 -100174949 + L1MB7 LINE L1 5824 5900 -284 2169 121 0 13 chr13 19569949 19570255 -100174643 + AluSq SINE Alu 1 302 -11 443 122 28 84 chr13 19570255 19570279 -100174619 + L1MB7 LINE L1 5900 5924 -260 337 82 41 0 chr13 19570311 19570360 -100174538 - U6 snRNA snRNA -50 57 7 899 250 49 0 chr13 19570361 19570625 -100174273 + L1MB7 LINE L1 5908 6184 0 * 2683 192 88 104 chr13 19570613 19571978 -100172920 + L1MEc LINE L1 1619 3005 -3210 621 189 18 9 chr13 19571978 19572089 -100172809 + AluSg/x SINE Alu 187 298 -11 1266 203 117 4 chr13 19572092 19572288 -100172610 - AluJo SINE Alu -6 296 61 2156 133 0 0 chr13 19572288 19572597 -100172301 + AluSx SINE Alu 4 312 0 1266 203 117 4 chr13 19572597 19572666 -100172232 - AluJo SINE Alu -241 61 1 2683 192 88 104 chr13 19572666 19572940 -100171958 + L1MEc LINE L1 3007 3296 -2919 2357 64 3 0 chr13 19573143 19573460 -100171438 - AluY SINE Alu 0 318 1 239 313 62 12 chr13 19573467 19573547 -100171351 + MIR3 SINE MIR 110 193 -15 360 0 0 0 chr13 19573875 19573915 -100170983 + (TG)n Simple_repeat Simple_repeat 2 41 0 527 257 0 0 chr13 19574149 19574254 -100170644 + MIR SINE MIR 6 110 -152 2227 96 0 14 chr13 19574365 19574658 -100170240 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr13 19577252 19577274 -100167624 + GC_rich Low_complexity Low_complexity 1 22 0 266 280 17 0 chr13 19577572 19577690 -100167208 + C-rich Low_complexity Low_complexity 1 120 0 1523 148 13 45 chr13 19578439 19578749 -100166149 - AluJb SINE Alu -12 300 1 553 198 54 9 chr13 19579192 19579303 -100165595 - MLT1C LTR MaLR -3 464 349 1703 115 23 4 chr13 19579309 19579569 -100165329 + MSTB LTR MaLR 2 266 -160 1018 142 32 0 chr13 19579793 19579948 -100164950 + MSTB LTR MaLR 267 426 0 622 221 13 27 chr13 19579953 19580202 -100164696 - MLT1C LTR MaLR -122 345 68 1912 149 3 3 chr13 19580202 19580503 -100164395 - AluSx SINE Alu -11 301 1 1391 99 0 5 chr13 19580716 19580907 -100163991 - AluSc SINE Alu -1 308 119 571 355 5 5 chr13 19581204 19581407 -100163491 - L2 LINE L2 -559 2755 2553 1859 123 10 47 chr13 19581419 19581720 -100163178 + AluSg SINE Alu 1 290 -20 2379 97 0 0 chr13 19582423 19582733 -100162165 + AluSg SINE Alu 1 310 0 2069 107 42 3 chr13 19582975 19583264 -100161634 + AluSx SINE Alu 1 300 -12 298 230 239 0 chr13 19583293 19583406 -100161492 + MER34 LTR ERV1 1 140 -402 * 1040 222 198 16 chr13 19583374 19583743 -100161155 + MER39 LTR ERV1 272 707 0 3409 144 26 42 chr13 19584512 19585137 -100159761 + MER49 LTR ERV1 9 623 -300 253 146 24 0 chr13 19585138 19585179 -100159719 + 5S rRNA rRNA 1 42 -79 * 1184 254 17 17 chr13 19585178 19585477 -100159421 + MER49 LTR ERV1 611 909 -14 1143 105 23 6 chr13 19585487 19585659 -100159239 - L1MA3 LINE L1 -1 6304 6130 1199 111 17 22 chr13 19585659 19585828 -100159070 - AluSg/x SINE Alu -22 290 121 574 148 0 0 chr13 19585828 19585909 -100158989 - AluJ/FRAM SINE Alu -11 301 221 6158 199 41 32 chr13 19585909 19586306 -100158592 - L1 LINE L1 -1761 5804 5412 1870 174 0 7 chr13 19586306 19586610 -100158288 - AluJb SINE Alu -10 302 1 6158 199 41 32 chr13 19586610 19586822 -100158076 - L1 LINE L1 -2153 5412 5204 2095 114 14 0 chr13 19586822 19587112 -100157786 - AluSq SINE Alu -19 294 1 6158 199 41 32 chr13 19587112 19588012 -100156886 - L1 LINE L1 -2361 5204 4314 2255 91 11 0 chr13 19588012 19588297 -100156601 - AluSp SINE Alu -24 289 2 6158 199 41 32 chr13 19588297 19588521 -100156377 - L1 LINE L1 -3251 4314 4094 2123 134 3 3 chr13 19588521 19588827 -100156071 - AluJb SINE Alu -6 306 1 6158 199 41 32 chr13 19588827 19589394 -100155504 - L1 LINE L1 -3471 4094 3438 857 140 13 7 chr13 19589411 19589561 -100155337 + L1M1 LINE L1 3009 3159 -4406 1133 84 0 39 chr13 19589565 19589720 -100155178 - AluY SINE Alu -162 149 1 16271 122 32 5 chr13 19589720 19592101 -100152797 - L1 LINE L1 -4611 2954 510 1057 139 47 142 chr13 19592124 19592398 -100152500 - L1MD3 LINE L1 -346 7649 7402 445 136 18 146 chr13 19592404 19592472 -100152426 - MLT1F1 LTR MaLR -449 118 68 2103 131 3 0 chr13 19592472 19592769 -100152129 + AluSx SINE Alu 1 298 -14 445 136 18 146 chr13 19592769 19592810 -100152088 - MLT1F1 LTR MaLR -499 68 23 586 195 8 25 chr13 19592811 19592929 -100151969 - L1MD3 LINE L1 -707 7288 7173 2406 67 3 0 chr13 19593105 19593402 -100151496 - AluY SINE Alu -13 298 1 335 307 79 8 chr13 19593874 19594001 -100150897 + L2 LINE L2 3178 3313 0 617 267 45 11 chr13 19594238 19594414 -100150484 + MIR SINE MIR 5 186 -76 243 0 0 0 chr13 19594429 19594456 -100150442 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1766 121 25 32 chr13 19594460 19594740 -100150158 - AluSx SINE Alu -33 279 2 303 282 23 8 chr13 19594749 19594880 -100150018 + (TA)n Simple_repeat Simple_repeat 2 134 0 23 0 0 0 chr13 19594980 19595003 -100149895 + AT_rich Low_complexity Low_complexity 1 23 0 207 151 38 0 chr13 19595269 19595322 -100149576 + A-rich Low_complexity Low_complexity 3 57 0 698 211 121 16 chr13 19595329 19595585 -100149313 - LTR50 LTR ERVL -506 289 7 370 238 76 9 chr13 19595589 19595744 -100149154 - L1MC/D LINE L1 -344 5818 5668 207 280 20 0 chr13 19595919 19595969 -100148929 + L2 LINE L2 3208 3258 -14 2435 70 0 10 chr13 19596261 19596563 -100148335 + AluSg SINE Alu 1 299 -11 1617 141 72 10 chr13 19596574 19596864 -100148034 + AluJo SINE Alu 1 308 -4 2243 112 3 0 chr13 19596864 19597168 -100147730 + AluSx SINE Alu 1 305 -7 487 131 30 0 chr13 19597180 19597279 -100147619 + GA-rich Low_complexity Low_complexity 2 103 0 1865 136 27 30 chr13 19598292 19598593 -100146305 + AluSx SINE Alu 1 300 -12 2394 63 0 31 chr13 19598783 19599102 -100145796 + AluY SINE Alu 1 309 -2 285 322 58 0 chr13 19599890 19599977 -100144921 - L2 LINE L2 -8 3305 3214 809 128 0 0 chr13 19599977 19600086 -100144812 + FLAM_A SINE Alu 22 130 -12 377 269 0 62 chr13 19600086 19600231 -100144667 - L2 LINE L2 -94 3219 3084 203 307 31 47 chr13 19600586 19600713 -100144185 + MIR3 SINE MIR 15 139 -69 711 176 65 41 chr13 19600825 19600995 -100143903 - MLT1B LTR MaLR -213 177 4 756 211 109 28 chr13 19601402 19601687 -100143211 + L1ME4a LINE L1 5536 5843 -278 225 187 9 75 chr13 19601687 19601794 -100143104 + (TA)n Simple_repeat Simple_repeat 1 100 0 386 292 99 9 chr13 19602449 19602715 -100142183 - L2 LINE L2 -264 3049 2768 321 180 0 0 chr13 19602756 19602817 -100142081 - L1MCa LINE L1 -4195 2231 2171 1042 147 23 45 chr13 19602859 19603036 -100141862 - AluJo SINE Alu -32 280 108 333 140 18 0 chr13 19603037 19603094 -100141804 - L1MCa LINE L1 -4241 2185 2128 441 192 23 0 chr13 19603105 19603235 -100141663 + CT-rich Low_complexity Low_complexity 2 134 0 2217 117 7 7 chr13 19603239 19603547 -100141351 - AluSx SINE Alu -2 310 3 2281 105 3 13 chr13 19603559 19603872 -100141026 - AluSp SINE Alu -3 310 1 388 192 0 14 chr13 19603872 19603945 -100140953 - L1MCa LINE L1 -6093 333 262 * 714 180 109 52 chr13 19603944 19604068 -100140830 - L1M4 LINE L1 -3016 3366 3250 2187 95 14 14 chr13 19604068 19604362 -100140536 + AluSq SINE Alu 1 294 -19 714 180 109 52 chr13 19604362 19604504 -100140394 - L1M4 LINE L1 -3132 3250 3085 4792 222 121 44 chr13 19604512 19604851 -100140047 - L1M4 LINE L1 -4547 1837 1526 2368 83 3 0 chr13 19604851 19605152 -100139746 - AluY SINE Alu -9 302 1 4792 222 121 44 chr13 19605152 19606508 -100138390 - L1M4 LINE L1 -4858 1526 11 1950 125 36 0 chr13 19606512 19606793 -100138105 - AluSq SINE Alu -22 291 1 2136 126 0 16 chr13 19607071 19607381 -100137517 - AluSx SINE Alu -7 305 1 195 298 76 15 chr13 19607420 19607551 -100137347 - L2 LINE L2 -4 3309 3171 309 337 153 12 chr13 19607706 19607955 -100136943 - L2 LINE L2 -344 2970 2687 495 287 57 62 chr13 19608023 19608232 -100136666 - MIR SINE MIR -51 211 4 373 278 137 50 chr13 19608232 19608595 -100136303 - L2 LINE L2 -660 2654 2260 21 82 0 0 chr13 19609077 19609126 -100135772 + AT_rich Low_complexity Low_complexity 1 49 0 251 301 96 0 chr13 19609156 19609229 -100135669 + L2 LINE L2 3155 3234 -38 180 111 0 0 chr13 19609277 19609304 -100135594 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 259 316 61 10 chr13 19609307 19609405 -100135493 - L2 LINE L2 -1 3271 3169 209 300 7 79 chr13 19609467 19609482 -100135416 - L2 LINE L2 -274 2998 2983 2515 65 0 7 chr13 19609482 19609790 -100135108 + AluY SINE Alu 1 306 -5 209 300 7 79 chr13 19609790 19609914 -100134984 - L2 LINE L2 -289 2983 2869 1219 210 98 0 chr13 19610361 19610637 -100134261 - L1MC4 LINE L1 -919 7123 6821 836 173 0 14 chr13 19612940 19613079 -100131819 - FLAM_C SINE Alu -6 137 1 453 138 0 69 chr13 19613101 19613188 -100131710 - AluJ/FRAM SINE Alu -7 305 225 2194 96 7 0 chr13 19613802 19614083 -100130815 - AluSg SINE Alu -27 283 1 901 198 25 1 chr13 19614561 19614756 -100130142 + MLT1A2 LTR MaLR 190 390 0 284 250 148 56 chr13 19614798 19614906 -100129992 + MIR SINE MIR 6 123 -139 303 284 80 11 chr13 19614920 19615008 -100129890 - MIR SINE MIR -150 112 19 2263 86 0 22 chr13 19615026 19615340 -100129558 + AluY SINE Alu 4 310 -1 1804 149 41 7 chr13 19615342 19615637 -100129261 + AluSx SINE Alu 1 305 -7 1748 172 10 3 chr13 19615676 19615979 -100128919 + AluJo SINE Alu 1 305 -7 1688 168 24 20 chr13 19616006 19616303 -100128595 - AluJo SINE Alu -14 298 1 22 0 0 0 chr13 19616440 19616462 -100128436 + AT_rich Low_complexity Low_complexity 1 22 0 2426 94 7 0 chr13 19616618 19616926 -100127972 - AluSx SINE Alu -2 310 1 489 227 41 104 chr13 19617084 19617219 -100127679 - L1MC/D LINE L1 -2234 5551 5434 1971 119 4 0 chr13 19617219 19617497 -100127401 - AluSx SINE Alu -33 279 1 489 227 41 104 chr13 19617497 19617632 -100127266 - L1MC/D LINE L1 -2351 5434 5292 379 160 40 110 chr13 19617632 19617660 -100127238 + LTR40a LTR ERVL 4 32 -487 2291 98 0 3 chr13 19617660 19617957 -100126941 - AluY SINE Alu -15 296 1 379 160 40 110 chr13 19617957 19618028 -100126870 + LTR40a LTR ERVL 32 96 -423 1022 98 147 18 chr13 19618029 19618192 -100126706 + AluSg SINE Alu 17 200 -110 1392 245 43 24 chr13 19618209 19618585 -100126313 + LTR40a LTR ERVL 137 519 0 1811 133 54 14 chr13 19618666 19618960 -100125938 - AluSx SINE Alu -6 306 1 406 320 97 30 chr13 19619091 19619422 -100125476 - L1MC/D LINE L1 -977 5169 4817 2305 79 0 0 chr13 19619510 19619787 -100125111 - AluY SINE Alu -18 293 17 357 284 58 86 chr13 19619858 19620252 -100124646 + MLT1I LTR MaLR 19 401 -8 358 263 19 58 chr13 19620512 19620668 -100124230 - HAL1b LINE L1 -12 1336 1187 376 331 83 14 chr13 19620676 19620966 -100123932 - L1MC/D LINE L1 -1779 4367 4058 180 218 73 18 chr13 19621882 19621937 -100122961 - MIR SINE MIR -106 156 99 4969 168 43 12 chr13 19623489 19624471 -100120427 + L1 LINE L1 3995 5006 -1140 5973 125 55 55 chr13 19624598 19625174 -100119724 + L1MA5A LINE L1 4903 5477 -820 1791 176 7 0 chr13 19625174 19625463 -100119435 - AluJo SINE Alu -21 291 1 5973 125 55 55 chr13 19625463 19625911 -100118987 + L1MA5A LINE L1 5477 5943 -354 2097 87 35 7 chr13 19625911 19626197 -100118701 + AluSq SINE Alu 1 294 -19 5973 125 55 55 chr13 19626197 19626551 -100118347 + L1MA5A LINE L1 5943 6295 -2 1263 262 18 12 chr13 19627311 19627647 -100117251 - L1M4 LINE L1 -1800 4346 4009 471 209 209 12 chr13 19627656 19627828 -100117070 - MLT1G1 LTR MaLR -389 206 1 289 347 21 11 chr13 19627992 19628087 -100116811 + L2 LINE L2 3142 3237 -35 272 200 40 0 chr13 19628194 19628244 -100116654 - L2 LINE L2 -38 3234 3183 2236 123 0 0 chr13 19629187 19629487 -100115411 - AluSx SINE Alu -12 300 1 557 282 84 73 chr13 19629766 19630258 -100114640 + L1MC4a LINE L1 3852 4337 -1809 2289 71 3 56 chr13 19630258 19630582 -100114316 + AluY SINE Alu 1 307 -4 557 282 84 73 chr13 19630582 19630970 -100113928 + L1MC4a LINE L1 4337 4746 -1400 563 133 36 0 chr13 19630970 19631053 -100113845 + L1MC1 LINE L1 6239 6324 -9 557 282 84 73 chr13 19631053 19631142 -100113756 + L1MC4a LINE L1 4746 4833 -1313 180 0 0 0 chr13 19631310 19631330 -100113568 + (CA)n Simple_repeat Simple_repeat 2 21 0 2241 110 3 0 chr13 19631330 19631630 -100113268 - AluSq SINE Alu -11 302 2 393 241 97 14 chr13 19632206 19632351 -100112547 - L1MC4 LINE L1 -1065 6977 6821 1271 286 102 42 chr13 19632450 19632972 -100111926 + L1MC4a LINE L1 5301 5822 -342 353 287 25 16 chr13 19633440 19633562 -100111336 + L1MC4a LINE L1 6476 6598 -1210 282 73 0 0 chr13 19633582 19633623 -100111275 + (CA)n Simple_repeat Simple_repeat 1 41 0 945 216 165 27 chr13 19633626 19634001 -100110897 + L1M4 LINE L1 4180 4606 -1540 2351 75 0 0 chr13 19634095 19634375 -100110523 - AluY SINE Alu -31 280 1 725 189 0 0 chr13 19634470 19634581 -100110317 + FLAM_A SINE Alu 20 130 -12 1279 234 40 20 chr13 19634590 19634941 -100109957 + L1M4 LINE L1 4647 5004 -1142 959 124 0 0 chr13 19634946 19635075 -100109823 + AluSq/x SINE Alu 5 133 -180 2240 93 3 7 chr13 19635081 19635383 -100109515 + AluY SINE Alu 3 303 -8 344 140 35 0 chr13 19635519 19635576 -100109322 + Alu SINE Alu 242 300 0 2184 98 7 3 chr13 19635604 19635899 -100108999 + AluSg SINE Alu 1 296 -14 217 330 96 52 chr13 19636608 19636953 -100107945 - L2 LINE L2 -1604 1710 1351 1777 142 38 10 chr13 19637190 19637478 -100107420 + AluJb SINE Alu 1 296 -16 244 288 166 31 chr13 19637554 19637717 -100107181 - MIR SINE MIR -22 240 56 1869 182 118 58 chr13 19638287 19638804 -100106094 + LTR10A LTR ERV1 1 548 -61 2577 136 12 24 chr13 19638817 19639300 -100105598 + L1PBa LINE L1 2279 2706 -4156 1994 97 76 7 chr13 19639363 19639652 -100105246 + AluSc SINE Alu 1 309 0 19952 111 15 12 chr13 19639652 19643345 -100101553 + L1PBa LINE L1 2703 6406 -441 333 171 37 0 chr13 19643442 19643524 -100101374 + L1MB7 LINE L1 5824 5908 -276 1594 117 4 17 chr13 19643524 19643755 -100101143 + AluSx SINE Alu 1 228 -84 10276 30 9 4 chr13 19643855 19645419 -100099479 - L1P2 LINE L1 -501 5654 4086 * 16471 34 8 1 chr13 19645400 19647523 -100097375 + L1P2 LINE L1 1934 4072 -2074 2694 255 149 9 chr13 19647523 19648443 -100096455 + L2 LINE L2 1202 2250 -1064 1692 186 24 34 chr13 19649792 19650201 -100094697 - L1M4b LINE L1 -5311 1548 1144 2427 281 103 20 chr13 19650243 19651140 -100093758 - L1M4b LINE L1 -5869 990 20 629 281 113 31 chr13 19651159 19651435 -100093463 - L1ME3 LINE L1 -334 6108 5856 2215 129 0 0 chr13 19651435 19651744 -100093154 - AluSx SINE Alu -3 309 1 629 281 113 31 chr13 19651744 19652186 -100092712 - L1ME3 LINE L1 -586 5856 5337 653 280 55 10 chr13 19652211 19652518 -100092380 - L1ME3 LINE L1 -1198 5228 4908 198 0 0 0 chr13 19652521 19652543 -100092355 + (CA)n Simple_repeat Simple_repeat 2 23 0 1911 249 53 28 chr13 19652904 19653588 -100091310 - L1ME3 LINE L1 -3212 3214 2514 5247 41 2 2 chr13 19653609 19654247 -100090651 - L1PA3 LINE L1 0 6155 5518 2309 173 127 33 chr13 19654267 19655072 -100089826 - L1ME3 LINE L1 -3993 2433 1390 2509 68 0 0 chr13 19655072 19655367 -100089531 + AluY SINE Alu 1 295 -16 2309 173 127 33 chr13 19655367 19655708 -100089190 - L1ME3 LINE L1 -5036 1390 1083 880 157 57 0 chr13 19655712 19655871 -100089027 - FRAM SINE Alu -13 163 1 2177 108 7 0 chr13 19656096 19656226 -100088672 + AluSx SINE Alu 1 129 -183 2198 104 0 7 chr13 19656226 19656534 -100088364 + AluSg SINE Alu 1 306 -4 2177 108 7 0 chr13 19656534 19656699 -100088199 + AluSx SINE Alu 129 298 -14 24 0 0 0 chr13 19657610 19657634 -100087264 + AT_rich Low_complexity Low_complexity 1 24 0 998 263 173 28 chr13 19657912 19658341 -100086557 - L2 LINE L2 -2 3311 2821 327 282 29 33 chr13 19658567 19658748 -100086150 - MIR SINE MIR -14 248 3 22 0 0 0 chr13 19660506 19660528 -100084370 + AT_rich Low_complexity Low_complexity 1 22 0 417 367 69 12 chr13 19660537 19660782 -100084116 - MIR SINE MIR -1 261 3 288 104 21 21 chr13 19661549 19661597 -100083301 - MIR3 SINE MIR -12 196 149 205 156 0 0 chr13 19661839 19661871 -100083027 + CT-rich Low_complexity Low_complexity 1 32 0 340 186 0 0 chr13 19662180 19662239 -100082659 + AluJo SINE Alu 78 136 -166 2296 89 0 3 chr13 19662263 19662565 -100082333 + AluY SINE Alu 1 301 -10 237 338 0 25 chr13 19662574 19662654 -100082244 - L2 LINE L2 -236 3036 2959 1678 134 100 1 chr13 19663035 19663623 -100081275 - LTR34 LTR ERV1 0 699 1 2400 70 3 0 chr13 19664120 19664419 -100080479 - AluY SINE Alu -11 300 1 21 0 0 0 chr13 19664576 19664597 -100080301 + AT_rich Low_complexity Low_complexity 1 21 0 2062 133 0 22 chr13 19666287 19666603 -100078295 + AluJb SINE Alu 1 309 -3 234 307 130 102 chr13 19668173 19668219 -100076679 + L2 LINE L2 2972 3015 -257 1513 164 18 94 chr13 19668219 19668372 -100076526 + AluJo SINE Alu 1 104 -208 2290 93 10 7 chr13 19668372 19668673 -100076225 + AluSg SINE Alu 1 302 -8 1513 164 18 94 chr13 19668673 19668868 -100076030 + AluJo SINE Alu 104 312 0 234 307 130 102 chr13 19668868 19669114 -100075784 + L2 LINE L2 3015 3272 0 1628 183 7 39 chr13 19669151 19669457 -100075441 + AluJb SINE Alu 1 296 -16 2304 101 0 3 chr13 19670191 19670489 -100074409 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 19670623 19670645 -100074253 + AT_rich Low_complexity Low_complexity 1 22 0 1721 103 0 0 chr13 19672040 19672254 -100072644 - AluSx SINE Alu -87 225 12 1608 160 106 47 chr13 19673421 19673828 -100071070 + LTR10A LTR ERV1 118 548 -61 718 204 91 17 chr13 19673947 19674123 -100070775 + AluJo SINE Alu 123 311 -1 2373 78 0 0 chr13 19674954 19675250 -100069648 + AluY SINE Alu 1 296 -15 301 295 0 0 chr13 19677175 19677253 -100067645 + L2 LINE L2 1480 1557 -1757 1518 224 3 13 chr13 19677253 19677556 -100067342 - AluJb SINE Alu -11 301 2 439 201 187 0 chr13 19677990 19678129 -100066769 + L1MC4 LINE L1 6945 7109 -933 774 218 73 28 chr13 19678140 19678388 -100066510 + L1MC4 LINE L1 7276 7534 -508 219 358 49 0 chr13 19678560 19678641 -100066257 - L2 LINE L2 0 3272 3188 7250 123 12 6 chr13 19678868 19680332 -100064566 + Harlequin LTR ERV1 3209 6623 -26 1679 191 104 52 chr13 19680360 19680879 -100064019 + LTR10A LTR ERV1 1 546 -63 260 169 46 0 chr13 19680893 19680958 -100063940 + L1P LINE L1 1594 1661 -4485 2346 104 0 0 chr13 19681573 19681872 -100063026 + AluSx SINE Alu 2 300 -12 1818 135 96 16 chr13 19682017 19682329 -100062569 + MER1B DNA MER1_type 1 337 0 252 218 0 36 chr13 19682808 19682863 -100062035 + L2 LINE L2 2588 2640 -674 947 175 67 127 chr13 19682909 19683280 -100061618 - Charlie4a DNA MER1_type -159 349 1 429 318 168 51 chr13 19683417 19683732 -100061166 + L2 LINE L2 2920 3271 -1 25 0 0 0 chr13 19683860 19683885 -100061013 + AT_rich Low_complexity Low_complexity 1 25 0 2353 56 0 0 chr13 19683949 19684234 -100060664 - AluY SINE Alu -26 285 1 2059 101 14 17 chr13 19684962 19685258 -100059640 + AluSg SINE Alu 1 295 -15 2505 49 3 0 chr13 19685379 19685686 -100059212 + AluY SINE Alu 1 308 -3 1821 60 80 90 chr13 19686108 19686409 -100058489 - AluSq SINE Alu -14 299 2 309 253 178 41 chr13 19687075 19687221 -100057677 + L1M2 LINE L1 1068 1233 -5616 431 250 64 57 chr13 19688374 19688514 -100056384 + MIR SINE MIR 25 167 -41 394 282 114 13 chr13 19688522 19688671 -100056227 + MIR SINE MIR 93 256 -6 346 289 132 0 chr13 19689115 19689236 -100055662 + L2 LINE L2 3136 3272 0 181 302 19 0 chr13 19691120 19691173 -100053725 + MIR SINE MIR 100 153 -55 188 330 44 11 chr13 19691240 19691331 -100053567 - L2 LINE L2 -6 3307 3214 786 237 113 34 chr13 19691374 19691788 -100053110 - Charlie7 DNA MER1_type -40 2572 2126 377 186 156 106 chr13 19691805 19691979 -100052919 - L1MC5 LINE L1 -48 7913 7726 2020 150 0 0 chr13 19691979 19692001 -100052897 - AluSx SINE Alu -5 307 286 201 74 0 0 chr13 19692001 19692028 -100052870 + (TG)n Simple_repeat Simple_repeat 2 28 0 2020 150 0 0 chr13 19692028 19692312 -100052586 - AluSx SINE Alu -25 287 1 377 186 156 106 chr13 19692312 19692336 -100052562 - L1MC5 LINE L1 -235 7726 7705 364 265 95 86 chr13 19693920 19694118 -100050780 - L1M2 LINE L1 -5579 1270 1066 3334 107 236 7 chr13 19694118 19694678 -100050220 + LTR12 LTR ERV1 1 688 0 364 265 95 86 chr13 19694678 19694815 -100050083 - L1M2 LINE L1 -5783 1066 932 228 306 35 0 chr13 19694917 19695002 -100049896 - Charlie7 DNA MER1_type -1073 1539 1452 969 177 0 111 chr13 19695010 19695253 -100049645 - MER20 DNA MER1_type -3 216 1 459 290 0 8 chr13 19695255 19695379 -100049519 + L2 LINE L2 3191 3313 0 1313 230 178 58 chr13 19695482 19695857 -100049041 - Charlie7 DNA MER1_type -1789 823 494 2301 102 3 3 chr13 19695857 19696160 -100048738 + AluSq SINE Alu 1 303 -10 1313 230 178 58 chr13 19696160 19696394 -100048504 - Charlie7 DNA MER1_type -2118 494 290 2221 119 13 0 chr13 19696394 19696697 -100048201 - AluSq SINE Alu -6 307 1 1313 230 178 58 chr13 19696697 19696710 -100048188 - Charlie7 DNA MER1_type -2322 290 280 219 25 75 0 chr13 19696710 19696750 -100048148 + (TA)n Simple_repeat Simple_repeat 2 44 0 1313 230 178 58 chr13 19696750 19696856 -100048042 - Charlie7 DNA MER1_type -2332 280 5 600 216 54 54 chr13 19696910 19697132 -100047766 + MLT1J2 LTR MaLR 1 222 -228 358 105 0 79 chr13 19697230 19697306 -100047592 + MLT1J2 LTR MaLR 381 450 0 2161 119 0 7 chr13 19697804 19698114 -100046784 - AluSq SINE Alu -5 308 1 6721 74 5 1 chr13 19700181 19701258 -100043640 + L1PA8A LINE L1 5025 6104 -27 546 245 77 0 chr13 19701443 19701586 -100043312 + LTR41 LTR ERVL 1 154 -619 382 242 55 24 chr13 19702119 19702284 -100042614 + LTR41 LTR ERVL 599 768 -5 2215 121 0 0 chr13 19702694 19702991 -100041907 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 19703210 19703231 -100041667 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 19703353 19703385 -100041513 + AT_rich Low_complexity Low_complexity 1 32 0 388 220 88 0 chr13 19703482 19703573 -100041325 - L2 LINE L2 0 3313 3215 257 264 23 35 chr13 19703771 19703858 -100041040 - L2 LINE L2 -1 3271 3186 2404 52 0 14 chr13 19703913 19704244 -100040654 + AluY SINE Alu 1 327 0 421 336 29 14 chr13 19704660 19704800 -100040098 + L3 LINE CR1 1395 1536 -41 2233 88 0 17 chr13 19705000 19705294 -100039604 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 19705449 19705582 -100039316 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 19705748 19706055 -100038843 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 19706190 19706314 -100038584 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 19706339 19706369 -100038529 + AT_rich Low_complexity Low_complexity 1 30 0 386 254 135 24 chr13 19707191 19707317 -100037581 - L1M4b LINE L1 -6700 159 20 863 281 150 23 chr13 19707336 19707612 -100037286 - L1ME3 LINE L1 -334 6246 6006 2277 117 0 0 chr13 19707612 19707920 -100036978 - AluSx SINE Alu -4 308 1 863 281 150 23 chr13 19707920 19708716 -100036182 - L1ME3 LINE L1 -574 6006 5046 198 0 0 0 chr13 19708719 19708741 -100036157 + (CA)n Simple_repeat Simple_repeat 2 23 0 2222 242 54 29 chr13 19709090 19709788 -100035110 - L1ME3 LINE L1 -3197 3367 2652 4057 40 8 8 chr13 19709807 19710285 -100034613 - L1PA4 LINE L1 -1 6154 5677 4953 56 27 21 chr13 19710636 19711266 -100033632 - L1PA5 LINE L1 -3 6151 5518 2679 174 139 36 chr13 19711286 19712092 -100032806 - L1ME3 LINE L1 -3993 2571 1566 2530 68 0 0 chr13 19712092 19712388 -100032510 + AluY SINE Alu 1 296 -15 2679 174 139 36 chr13 19712388 19712475 -100032423 - L1ME3 LINE L1 -4998 1566 1489 1191 221 108 18 chr13 19712702 19713037 -100031861 - L1ME3 LINE L1 -4983 1581 1217 1054 151 44 0 chr13 19713037 19713196 -100031702 - FRAM SINE Alu -16 160 1 3285 215 94 46 chr13 19713226 19714288 -100030610 - L1ME3 LINE L1 -4851 1194 82 989 108 0 0 chr13 19714469 19714599 -100030299 + AluSq/x SINE Alu 1 130 -183 2197 63 39 7 chr13 19714599 19714884 -100030014 + AluSq SINE Alu 1 294 -19 2301 131 8 6 chr13 19714886 19715238 -100029660 + L1MA5A LINE L1 5943 6295 -2 234 91 0 0 chr13 19716341 19716374 -100028524 + (A)n Simple_repeat Simple_repeat 1 33 0 230 285 258 43 chr13 19716624 19716880 -100028018 + L3b LINE CR1 1257 1567 -16 23 33 0 0 chr13 19717026 19717056 -100027842 + AT_rich Low_complexity Low_complexity 1 30 0 362 254 76 42 chr13 19717365 19717483 -100027415 - MER5A DNA MER1_type -51 138 17 1200 186 5 9 chr13 19718093 19718303 -100026595 - MER3 DNA MER1_type 0 209 1 1524 134 169 12 chr13 19718571 19718825 -100026073 + AluJb SINE Alu 1 294 -8 257 170 0 38 chr13 19719222 19719275 -100025623 - L2 LINE L2 0 3313 3263 940 208 73 38 chr13 19719523 19719840 -100025058 - MLT1C LTR MaLR 0 467 140 1330 149 38 4 chr13 19719840 19720126 -100024772 + L1PA16 LINE L1 5858 6162 -1 625 180 25 87 chr13 19720152 19720313 -100024585 - MLT1C LTR MaLR -316 151 1 319 259 99 71 chr13 19721086 19721298 -100023600 - L2 LINE L2 -2 3311 3094 221 290 167 41 chr13 19721605 19721850 -100023048 - L2 LINE L2 -674 2640 2365 2016 124 0 7 chr13 19721918 19722208 -100022690 - AluSx SINE Alu -24 288 1 2346 70 0 3 chr13 19722395 19722722 -100022176 + AluY SINE Alu 1 326 0 435 329 29 14 chr13 19723138 19723278 -100021620 + L3 LINE CR1 1395 1536 -41 2218 92 0 17 chr13 19723478 19723772 -100021126 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 19723927 19724060 -100020838 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 19724226 19724533 -100020365 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 19724668 19724792 -100020106 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 19724817 19724847 -100020051 + AT_rich Low_complexity Low_complexity 1 30 0 2281 107 0 7 chr13 19725678 19725988 -100018910 - AluSx SINE Alu 0 312 5 2531 63 0 0 chr13 19726418 19726721 -100018177 - AluY SINE Alu -8 303 1 2384 45 21 7 chr13 19726925 19727214 -100017684 - AluY SINE Alu -18 293 1 228 285 168 0 chr13 19727707 19727844 -100017054 - HAL1 LINE L1 -2319 188 29 1016 197 16 0 chr13 19728574 19728757 -100016141 + MER5A DNA MER1_type 3 188 -1 434 266 129 60 chr13 19728786 19729451 -100015447 - L1MEd LINE L1 -2964 3165 2455 333 345 114 8 chr13 19729461 19729707 -100015191 - L1MEd LINE L1 -3969 2341 2070 1707 184 74 18 chr13 19729843 19730169 -100014729 + MER2 DNA MER2_type 1 344 0 786 255 82 85 chr13 19730396 19731446 -100013452 - L1MEd LINE L1 -4480 1649 609 288 339 114 40 chr13 19731657 19732035 -100012863 - MLT1J2 LTR MaLR -44 406 1 263 253 27 13 chr13 19732070 19732145 -100012753 - L1MEd LINE L1 -6031 88 13 192 250 0 0 chr13 19732152 19732192 -100012706 - MER5B DNA MER1_type -135 43 4 2353 70 3 35 chr13 19732417 19732730 -100012168 + AluY SINE Alu 1 303 -8 32 43 0 0 chr13 19733383 19733429 -100011469 + AT_rich Low_complexity Low_complexity 1 46 0 2412 84 0 0 chr13 19733553 19733849 -100011049 - AluSq SINE Alu -17 296 1 2044 93 0 15 chr13 19734344 19734612 -100010286 - AluSx SINE Alu -43 269 6 295 273 201 26 chr13 19734769 19734923 -100009975 - MIR3 SINE MIR -7 201 21 287 307 30 20 chr13 19735846 19735947 -100008951 - MIR SINE MIR -119 143 42 439 233 92 0 chr13 19736000 19736120 -100008778 + LTR33A LTR ERVL 61 191 -332 313 196 345 0 chr13 19736178 19736326 -100008572 + LTR33A LTR ERVL 318 516 -7 275 308 68 30 chr13 19736624 19736757 -100008141 - MER5B DNA MER1_type -40 138 1 778 199 58 0 chr13 19736765 19736936 -100007962 + MER5A DNA MER1_type 1 181 -8 281 321 60 22 chr13 19737157 19737291 -100007607 - L2 LINE L2 0 3313 3175 295 268 70 108 chr13 19740044 19740201 -100004697 + MER96 DNA MER1_type? 25 175 0 225 0 0 0 chr13 19740366 19740391 -100004507 + (TG)n Simple_repeat Simple_repeat 2 26 0 2089 147 0 6 chr13 19740402 19740716 -100004182 - AluSx SINE Alu 0 312 1 209 325 13 0 chr13 19742892 19742969 -100001929 - L2 LINE L2 -11 3302 3225 291 325 124 20 chr13 19743012 19743261 -100001637 + L3b LINE CR1 1123 1397 -186 1871 214 116 9 chr13 19743363 19743822 -100001076 - MLT2B2 LTR ERVL -7 508 1 2250 115 0 3 chr13 19743827 19744123 -100000775 - AluSx SINE Alu -17 295 1 268 330 41 0 chr13 19744694 19744791 -100000107 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 19745000 19745175 -99999723 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 19745395 19745454 -99999444 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 19745508 19745596 -99999302 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 19745991 19746133 -99998765 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 19746220 19746394 -99998504 + MER5A DNA MER1_type 1 159 -30 2522 63 48 40 chr13 19746798 19747177 -99997721 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 19748089 19748215 -99996683 + L3 LINE CR1 3 130 -1447 557 154 8 85 chr13 19748378 19748508 -99996390 + MLT2B1 LTR ERVL 399 518 -2 2550 61 0 0 chr13 19748801 19749098 -99995800 + AluY SINE Alu 1 297 -14 833 96 0 4 chr13 19749361 19749572 -99995326 - AluY SINE Alu -8 303 2 279 59 0 0 chr13 19749687 19749721 -99995177 - MLT2C2 LTR ERVL -335 129 96 762 211 96 46 chr13 19749745 19749963 -99994935 + MLT2C1 LTR ERVL 121 349 -48 189 213 0 0 chr13 19749985 19750032 -99994866 + C-rich Low_complexity Low_complexity 1 47 0 357 117 0 0 chr13 19750314 19750374 -99994524 + (TA)n Simple_repeat Simple_repeat 1 60 0 204 232 21 11 chr13 19750467 19750562 -99994336 + (TA)n Simple_repeat Simple_repeat 2 97 0 248 296 88 25 chr13 19750603 19750762 -99994136 - L1ME4a LINE L1 -71 6050 5882 2028 97 0 0 chr13 19750871 19751138 -99993760 + AluSq SINE Alu 44 310 -3 312 320 16 0 chr13 19751147 19751272 -99993626 - MIR SINE MIR -15 247 121 2576 55 0 3 chr13 19751381 19751689 -99993209 - AluY SINE Alu -4 307 1 2452 45 3 7 chr13 19753166 19753458 -99991440 + AluY SINE Alu 1 291 -20 1152 276 100 51 chr13 19754493 19755550 -99989348 + L1MCc LINE L1 1168 2484 -4638 2510 127 11 3 chr13 19755932 19756293 -99988605 - THE1B LTR MaLR 0 364 1 372 349 60 5 chr13 19756812 19757027 -99987871 + L2 LINE L2 2745 2971 -343 521 172 0 11 chr13 19757037 19757130 -99987768 - Tigger7 DNA MER2_type -6 2581 2490 * 1538 183 4 8 chr13 19757127 19757390 -99987508 - Tigger7 DNA MER2_type -2224 263 2 418 271 205 5 chr13 19757408 19757618 -99987280 + L2 LINE L2 2989 3240 -73 336 330 154 0 chr13 19757675 19758001 -99986897 - L2 LINE L2 -150 3163 2794 838 294 144 17 chr13 19758072 19758718 -99986180 - L2 LINE L2 -671 2643 1916 478 288 94 21 chr13 19758953 19759186 -99985712 + MIR SINE MIR 13 262 0 1487 289 29 25 chr13 19759938 19760551 -99984347 - L1MC4a LINE L1 -1883 5925 5310 761 118 17 0 chr13 19760522 19760641 -99984257 - L1MCa LINE L1 -4801 1625 1505 * 1383 174 190 45 chr13 19760641 19761015 -99983883 - MSTB2 LTR MaLR -7 450 23 5841 240 133 13 chr13 19761028 19762576 -99982322 - MSTD-int LTR MaLR 0 1735 2 1295 234 46 38 chr13 19762578 19762971 -99981927 - MSTD LTR MaLR 0 396 1 4615 201 34 100 chr13 19763006 19764572 -99980326 - L1MCa LINE L1 -4938 1488 26 180 125 0 0 chr13 19764647 19764679 -99980219 + (CA)n Simple_repeat Simple_repeat 1 32 0 1771 143 4 8 chr13 19764689 19764948 -99979950 - AluJo SINE Alu -49 263 6 2161 79 61 0 chr13 19764955 19765233 -99979665 - AluY SINE Alu -16 295 1 399 309 82 30 chr13 19765368 19765990 -99978908 - L1MC4a LINE L1 -1006 5420 4767 2225 100 3 7 chr13 19766028 19766346 -99978552 + AluSx SINE Alu 1 312 0 937 121 0 0 chr13 19766369 19766501 -99978397 + FLAM_C SINE Alu 1 132 -1 206 111 56 0 chr13 19766568 19766604 -99978294 + CT-rich Low_complexity Low_complexity 3 40 0 617 268 42 0 chr13 19766828 19767018 -99977880 + MIR SINE MIR 60 257 -5 378 0 0 0 chr13 19769312 19769354 -99975544 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr13 19769355 19769384 -99975514 + GC_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 19769446 19769484 -99975414 + GC_rich Low_complexity Low_complexity 1 38 0 231 36 0 0 chr13 19769987 19770015 -99974883 + (TG)n Simple_repeat Simple_repeat 1 28 0 189 132 0 0 chr13 19771742 19771780 -99973118 + (TC)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 19773296 19773319 -99971579 + GC_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 19773953 19774005 -99970893 + GC_rich Low_complexity Low_complexity 1 52 0 206 220 17 0 chr13 19776736 19776795 -99968103 + CT-rich Low_complexity Low_complexity 1 60 0 309 317 7 113 chr13 19777322 19777606 -99967292 + L2 LINE L2 3014 3267 -5 365 237 31 0 chr13 19777823 19777920 -99966978 + MIR SINE MIR 93 192 -70 2322 69 0 60 chr13 19779102 19779421 -99965477 + AluY SINE Alu 4 303 -8 345 137 0 0 chr13 19779917 19779968 -99964930 - MLT1A2 LTR MaLR -56 318 268 203 171 158 53 chr13 19781158 19781234 -99963664 - L2 LINE L2 -12 3301 3218 256 257 9 106 chr13 19781250 19781363 -99963535 + L2 LINE L2 3171 3272 0 1649 148 18 25 chr13 19781443 19781720 -99963178 - AluJo SINE Alu -2 310 36 210 171 0 0 chr13 19781912 19781947 -99962951 + (TA)n Simple_repeat Simple_repeat 2 36 0 323 158 53 53 chr13 19782269 19782345 -99962553 - Charlie7 DNA MER1_type 0 2612 2537 23 0 0 0 chr13 19782380 19782403 -99962495 + AT_rich Low_complexity Low_complexity 1 23 0 182 255 59 0 chr13 19783237 19783288 -99961610 - L3b LINE CR1 -50 1533 1480 186 314 14 0 chr13 19784123 19784193 -99960705 + MIR3 SINE MIR 116 186 -22 1669 135 108 0 chr13 19785511 19785771 -99959127 - AluSx SINE Alu -24 288 1 252 262 58 29 chr13 19786320 19786423 -99958475 - MIR SINE MIR -80 128 23 182 333 71 0 chr13 19787931 19788030 -99956868 - MIR SINE MIR -112 150 45 300 294 64 18 chr13 19788755 19788864 -99956034 + L2 LINE L2 3159 3272 0 260 356 7 0 chr13 19789610 19789759 -99955139 + (CA)n Simple_repeat Simple_repeat 1 150 0 * 339 301 28 17 chr13 19789733 19789909 -99954989 + (CTCA)n Simple_repeat Simple_repeat 3 180 0 2689 215 107 5 chr13 19790012 19790603 -99954295 - MER82 DNA MER2_type -2 651 1 182 211 35 0 chr13 19791682 19791739 -99953159 + CT-rich Low_complexity Low_complexity 2 60 0 224 316 118 21 chr13 19791908 19792095 -99952803 + MIR SINE MIR 23 227 -35 403 268 28 16 chr13 19793498 19793623 -99951275 - MIR3 SINE MIR -8 200 71 444 37 0 0 chr13 19794505 19794559 -99950339 + (TG)n Simple_repeat Simple_repeat 1 54 0 1735 164 40 3 chr13 19796590 19796889 -99948009 - AluJb SINE Alu -2 310 1 2575 30 0 7 chr13 19797251 19797550 -99947348 - AluY SINE Alu -14 297 1 215 351 26 18 chr13 19797694 19797808 -99947090 + MIR3 SINE MIR 88 202 -6 287 333 48 24 chr13 19797867 19798035 -99946863 - MIR SINE MIR -70 192 21 306 0 0 0 chr13 19799458 19799492 -99945406 + (TG)n Simple_repeat Simple_repeat 2 35 0 442 261 72 67 chr13 19799784 19799964 -99944934 + MER5A DNA MER1_type 8 188 -1 1302 64 0 0 chr13 19800461 19800617 -99944281 - L1PA10 LINE L1 -4 6164 6009 390 42 0 0 chr13 19801143 19801191 -99943707 + (TG)n Simple_repeat Simple_repeat 2 49 0 202 0 59 29 chr13 19801428 19801462 -99943436 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 35 41 0 0 chr13 19801497 19801546 -99943352 + AT_rich Low_complexity Low_complexity 1 49 0 35 0 0 0 chr13 19804950 19804985 -99939913 + AT_rich Low_complexity Low_complexity 1 35 0 2373 80 0 13 chr13 19804986 19805288 -99939610 + AluY SINE Alu 1 298 -13 207 0 0 0 chr13 19806460 19806483 -99938415 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1662 195 0 3 chr13 19806483 19806765 -99938133 - AluSx SINE Alu -27 285 5 276 236 90 11 chr13 19806904 19806993 -99937905 - L2 LINE L2 -1 3312 3217 207 0 0 0 chr13 19808640 19808663 -99936235 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4038 244 74 68 chr13 19809450 19809897 -99935001 + L1ME1 LINE L1 422 865 -5531 2691 118 66 20 chr13 19809897 19810304 -99934594 - MSTB LTR MaLR 0 426 1 4038 244 74 68 chr13 19810304 19810965 -99933933 + L1ME1 LINE L1 865 1520 -4876 1772 68 0 5 chr13 19810965 19811186 -99933712 - AluY SINE Alu -6 305 86 4038 244 74 68 chr13 19811186 19811355 -99933543 + L1ME1 LINE L1 1520 1686 -4710 2429 75 0 0 chr13 19811355 19811647 -99933251 + AluY SINE Alu 1 292 -19 4038 244 74 68 chr13 19811647 19812033 -99932865 + L1ME1 LINE L1 1686 2098 -4298 2466 230 31 8 chr13 19812036 19812672 -99932226 + L1ME1 LINE L1 2179 2829 -3386 1919 50 0 0 chr13 19812658 19812897 -99932001 - L1P LINE L1 -848 5298 5060 * 2758 75 0 0 chr13 19812897 19813230 -99931668 + L1PA5 LINE L1 5820 6154 0 642 247 110 0 chr13 19813230 19813457 -99931441 + L1ME1 LINE L1 2806 3057 -3158 229 211 19 0 chr13 19813451 19813503 -99931395 + L1ME1 LINE L1 3762 3814 -2401 * 2190 123 3 0 chr13 19813533 19813835 -99931063 + AluSx SINE Alu 5 307 -5 2550 231 58 33 chr13 19813835 19814614 -99930284 + L1ME1 LINE L1 4053 4850 -1365 * 3066 208 86 28 chr13 19814605 19815505 -99929393 + L1ME1 LINE L1 5293 6399 -4 33 0 0 0 chr13 19816538 19816571 -99928327 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 19816730 19816759 -99928139 + AT_rich Low_complexity Low_complexity 1 29 0 660 287 121 18 chr13 19816882 19817105 -99927793 + MIR SINE MIR 13 258 -4 1529 119 80 88 chr13 19817980 19818260 -99926638 + L1MA8 LINE L1 5943 6221 -70 2282 113 0 0 chr13 19818260 19818562 -99926336 - AluSx SINE Alu -10 302 1 1529 119 80 88 chr13 19818562 19818633 -99926265 + L1MA8 LINE L1 6221 6291 0 472 320 75 23 chr13 19819715 19820021 -99924877 + L2 LINE L2 2253 2574 -740 892 225 67 0 chr13 19820131 19820340 -99924558 - MER46C DNA MER2_type -24 314 92 3351 149 9 11 chr13 19821830 19822399 -99922499 - L1MA9 LINE L1 0 6312 5745 338 385 8 0 chr13 19822678 19822800 -99922098 - L2 LINE L2 -9 3263 3141 2369 95 0 7 chr13 19822882 19823187 -99921711 + AluSq SINE Alu 1 303 -10 183 42 0 0 chr13 19823266 19823290 -99921608 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 387 393 22 11 chr13 19823484 19823756 -99921142 - L3 LINE CR1 -366 1211 937 348 259 152 25 chr13 19823974 19824171 -99920727 - MIR SINE MIR -21 241 20 1199 119 0 6 chr13 19825297 19825621 -99919277 + (CCA)n Simple_repeat Simple_repeat 1 503 0 579 269 12 29 chr13 19825622 19825793 -99919105 - MIR SINE MIR -9 253 86 30 0 0 0 chr13 19827379 19827409 -99917489 + AT_rich Low_complexity Low_complexity 1 30 0 507 209 29 64 chr13 19827714 19827886 -99917012 - MER104 DNA Tc2 0 180 15 206 224 20 0 chr13 19827952 19828001 -99916897 + (CCCTAA)n Simple_repeat Simple_repeat 4 53 0 229 405 41 15 chr13 19828001 19828268 -99916630 + L2 LINE L2 2463 2736 -578 1484 162 62 4 chr13 19828396 19828655 -99916243 - AluJo SINE Alu -38 274 1 1326 166 28 5 chr13 19829030 19829247 -99915651 + MER58A DNA MER1_type 1 222 -2 192 158 0 0 chr13 19830708 19830746 -99914152 + GA-rich Low_complexity Low_complexity 6 43 0 858 286 81 25 chr13 19830979 19831159 -99913739 - MLT1J LTR MaLR 0 511 343 2483 199 88 27 chr13 19831159 19831681 -99913217 + MLT2B3 LTR ERVL 1 554 0 858 286 81 25 chr13 19831681 19831955 -99912943 - MLT1J LTR MaLR -168 343 6 478 166 101 157 chr13 19832578 19832795 -99912103 + MER102b DNA MER1_type 137 341 0 354 348 90 32 chr13 19832798 19833198 -99911700 - L2 LINE L2 -1039 2275 1853 367 287 22 37 chr13 19833419 19833555 -99911343 - MIR SINE MIR -70 192 59 189 210 113 0 chr13 19834003 19834065 -99910833 + L2 LINE L2 3245 3313 0 711 299 0 15 chr13 19834179 19834383 -99910515 - MIR SINE MIR 0 262 62 2321 91 0 3 chr13 19834684 19834982 -99909916 - AluSx SINE Alu -15 297 1 328 271 133 13 chr13 19836492 19836643 -99908255 + MER5A DNA MER1_type 21 189 0 229 275 116 0 chr13 19836852 19836921 -99907977 - MIR SINE MIR -75 187 111 2225 111 10 0 chr13 19837043 19837341 -99907557 - AluSq SINE Alu -12 301 1 345 242 0 0 chr13 19837639 19837705 -99907193 + MER63 DNA MER1_type 682 747 -314 594 237 200 0 chr13 19840165 19840355 -99904543 - MIR SINE MIR -3 259 32 1867 211 40 11 chr13 19840837 19841283 -99903615 + MLT1C LTR MaLR 1 459 -8 260 262 262 0 chr13 19841292 19841395 -99903503 - MER5A DNA MER1_type -39 150 21 346 339 127 27 chr13 19841959 19842251 -99902647 + L2 LINE L2 2944 3264 -8 1222 49 0 27 chr13 19842799 19842983 -99901915 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1092 289 50 56 chr13 19842983 19843660 -99901238 + L2 LINE L2 2655 3313 0 219 296 57 0 chr13 19843818 19843906 -99900992 - L2 LINE L2 0 3272 3180 375 347 95 46 chr13 19844321 19845119 -99899779 + L2 LINE L2 2220 3058 -214 2121 249 64 40 chr13 19845243 19846226 -99898672 - L1MEc LINE L1 -4494 1784 817 243 0 0 0 chr13 19846228 19846255 -99898643 + (TA)n Simple_repeat Simple_repeat 2 28 0 2612 147 12 7 chr13 19846255 19846678 -99898220 - L1MB2 LINE L1 -62 6109 5685 2070 260 92 54 chr13 19846679 19847441 -99897457 - L1MEc LINE L1 -5571 825 35 1770 155 17 28 chr13 19848169 19848460 -99896438 - AluJo SINE Alu -24 288 1 373 317 81 8 chr13 19848607 19848730 -99896168 + MIR3 SINE MIR 3 134 -74 570 274 88 34 chr13 19848756 19848960 -99895938 - MIR SINE MIR 0 262 48 669 230 131 80 chr13 19849147 19849634 -99895264 - L1MEd LINE L1 -4927 1192 681 1244 145 114 86 chr13 19849994 19850284 -99894614 - AluJb SINE Alu -14 298 1 498 283 66 0 chr13 19850292 19850458 -99894440 - L1MEd LINE L1 -5939 180 4 326 314 97 0 chr13 19850459 19850583 -99894315 - MIR SINE MIR -61 201 66 27 39 0 19 chr13 19851432 19851449 -99893449 + AT_rich Low_complexity Low_complexity 1 17 -34 1542 110 103 8 chr13 19851449 19851712 -99893186 + L1MA3 LINE L1 6018 6305 0 27 39 0 19 chr13 19851712 19851746 -99893152 + AT_rich Low_complexity Low_complexity 17 51 0 23 33 0 0 chr13 19852315 19852345 -99892553 + AT_rich Low_complexity Low_complexity 1 30 0 758 266 31 5 chr13 19852345 19852537 -99892361 - MIR SINE MIR -51 211 15 283 250 145 57 chr13 19854125 19854249 -99890649 + MIR3 SINE MIR 21 155 -53 5518 148 21 8 chr13 19854639 19855530 -99889368 + MER4D LTR ERV1 1 903 0 2504 183 63 51 chr13 19856009 19856534 -99888364 + LTR26B LTR ERV1 1 531 0 183 42 0 0 chr13 19856766 19856790 -99888108 + (GGCTG)n Simple_repeat Simple_repeat 4 27 0 219 227 0 0 chr13 19857286 19857330 -99887568 + GA-rich Low_complexity Low_complexity 2 45 0 1845 161 63 9 chr13 19858356 19858766 -99886132 - MER31A LTR ERV1 -19 447 14 337 310 155 41 chr13 19860374 19861106 -99883792 + L2 LINE L2 2234 3052 -220 258 268 45 18 chr13 19861161 19861273 -99883625 + MER65B LTR ERV1 1 115 -416 500 210 10 0 chr13 19861724 19861824 -99883074 + L2 LINE L2 3172 3272 0 192 200 0 78 chr13 19862771 19862834 -99882064 + L2 LINE L2 3207 3303 -10 2115 55 82 34 chr13 19863063 19863238 -99881660 - AluYa5 SINE Alu -4 307 111 2562 50 7 0 chr13 19863238 19863541 -99881357 - AluY SINE Alu -6 305 1 2115 55 82 34 chr13 19863541 19863658 -99881240 - AluYa5 SINE Alu -200 111 1 22 0 0 0 chr13 19864641 19864663 -99880235 + AT_rich Low_complexity Low_complexity 1 22 0 3489 211 91 82 chr13 19864709 19865964 -99878934 + L1MC4 LINE L1 6759 8028 -14 1839 207 39 0 chr13 19865964 19866298 -99878600 - MER7A DNA MER2_type -1 345 1 3489 211 91 82 chr13 19866298 19866314 -99878584 + L1MC4 LINE L1 8028 8042 0 526 236 32 74 chr13 19868250 19868466 -99876432 - HAL1 LINE L1 -1 2506 2300 897 211 17 28 chr13 19868661 19868841 -99876057 - MER45A DNA AcHobo 0 178 1 1421 286 136 32 chr13 19868994 19869871 -99875027 - HAL1 LINE L1 -343 2164 1197 307 155 32 0 chr13 19869877 19869952 -99874946 - Alu SINE Alu -3 299 239 329 305 168 31 chr13 19869984 19870178 -99874720 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 19870178 19870209 -99874689 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 329 305 168 31 chr13 19870209 19870437 -99874461 - HAL1 LINE L1 -1530 977 663 193 234 0 0 chr13 19871868 19871915 -99872983 - MIR SINE MIR -111 151 105 2568 50 0 0 chr13 19872077 19872379 -99872519 + AluY SINE Alu 1 302 -9 322 401 28 19 chr13 19872486 19872698 -99872200 + L2 LINE L2 3032 3245 -27 2141 129 16 0 chr13 19872767 19873070 -99871828 - AluSx SINE Alu -4 308 1 2124 143 9 109 chr13 19874411 19874596 -99870302 + MLT2C1 LTR ERVL 1 118 -279 1501 172 16 67 chr13 19874596 19874910 -99869988 - AluJo SINE Alu -14 298 1 2124 143 9 109 chr13 19874910 19875165 -99869733 + MLT2C1 LTR ERVL 118 397 0 2359 69 3 0 chr13 19875776 19876064 -99868834 - AluSc SINE Alu -20 289 1 370 282 48 0 chr13 19876829 19876932 -99867966 + MIR SINE MIR 46 153 -109 2268 117 0 3 chr13 19877767 19878075 -99866823 + AluSx SINE Alu 5 311 -1 499 159 24 127 chr13 19878157 19878283 -99866615 + Tigger1 DNA MER2_type 6 118 -2300 255 31 0 0 chr13 19878283 19878315 -99866583 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1615 64 0 15 chr13 19878315 19878518 -99866380 - AluY SINE Alu -111 200 1 1097 71 0 0 chr13 19878529 19878670 -99866228 - AluY SINE Alu -1 310 170 15227 122 19 9 chr13 19878670 19880966 -99863932 + Tigger1 DNA MER2_type 101 2418 0 350 94 0 0 chr13 19881373 19881426 -99863472 - L1MA9 LINE L1 -255 6057 6005 235 316 103 32 chr13 19882699 19882854 -99862044 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 19883229 19883313 -99861585 + A-rich Low_complexity Low_complexity 4 85 0 711 51 24 55 chr13 19885519 19885776 -99859122 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 605 305 79 49 chr13 19886421 19887018 -99857880 - L1ME2 LINE L1 -293 5871 5257 410 329 48 14 chr13 19887122 19887268 -99857630 + MIR3 SINE MIR 40 190 -18 188 319 78 35 chr13 19887456 19887597 -99857301 + L2 LINE L2 3124 3270 -43 2262 100 7 0 chr13 19887957 19888256 -99856642 - AluSc SINE Alu -8 301 1 2646 98 3 35 chr13 19888610 19888671 -99856227 - THE1A LTR MaLR 0 355 294 2405 54 3 7 chr13 19888671 19888969 -99855929 - AluY SINE Alu -14 297 1 2646 98 3 35 chr13 19888969 19889274 -99855624 - THE1A LTR MaLR -61 294 1 829 181 0 0 chr13 19889838 19889976 -99854922 + FLAM_C SINE Alu 1 138 -5 1546 174 15 58 chr13 19889980 19890308 -99854590 + 7SLRNA srpRNA srpRNA 2 315 -5 2715 48 0 0 chr13 19890639 19890949 -99853949 + AluY SINE Alu 1 310 -1 2270 95 0 10 chr13 19891615 19891921 -99852977 - AluSx SINE Alu -9 303 1 186 314 54 50 chr13 19892248 19892487 -99852411 + L2 LINE L2 2602 2841 -473 331 78 78 0 chr13 19893105 19893156 -99851742 - MLT2A1 LTR ERVL 0 453 399 361 144 61 0 chr13 19893164 19893296 -99851602 + (TA)n Simple_repeat Simple_repeat 2 141 0 3126 53 23 5 chr13 19893298 19893691 -99851207 - MLT2A1 LTR ERVL -44 400 1 396 224 197 67 chr13 19893691 19893812 -99851086 + MARNA DNA Mariner 188 291 -295 2103 142 0 0 chr13 19893812 19894115 -99850783 - AluJb SINE Alu -9 303 1 396 224 197 67 chr13 19894115 19894239 -99850659 + MARNA DNA Mariner 291 466 -120 580 300 12 33 chr13 19895157 19895400 -99849498 + MIR SINE MIR 18 255 -7 393 298 39 44 chr13 19897216 19897397 -99847501 - MIR SINE MIR -70 192 13 746 171 0 8 chr13 19897516 19897645 -99847253 + FLAM_C SINE Alu 1 128 -5 1187 197 79 48 chr13 19897660 19897950 -99846948 + AluJo SINE Alu 2 300 -2 2119 104 24 3 chr13 19898187 19898475 -99846423 - AluSc SINE Alu -15 294 1 2251 94 44 0 chr13 19898535 19898832 -99846066 + AluSg SINE Alu 1 310 0 227 233 0 0 chr13 19900225 19900268 -99844630 - MER58A DNA MER1_type -5 219 177 446 227 0 0 chr13 19900268 19900356 -99844542 - MER58A DNA MER1_type 0 148 61 820 252 233 22 chr13 19900356 19900713 -99844185 + MER57A LTR ERV1 1 401 -2 270 299 30 0 chr13 19900713 19900777 -99844121 - MER58A DNA MER1_type -41 66 1 308 257 18 44 chr13 19901406 19901519 -99843379 - L2 LINE L2 0 3313 3204 1277 193 4 12 chr13 19902229 19902478 -99842420 + L1MB7 LINE L1 5649 5895 -289 1188 142 5 0 chr13 19902486 19902676 -99842222 - MER46B DNA MER2_type 0 236 46 5975 115 12 35 chr13 19902883 19903958 -99840940 - L1PB3 LINE L1 -2 6152 5097 682 134 225 0 chr13 19903961 19904103 -99840795 - MER46B DNA MER2_type -187 49 1 241 88 147 118 chr13 19904063 19904104 -99840794 + MER46A DNA MER2_type 97 142 -2589 * 1361 204 0 31 chr13 19904104 19904393 -99840505 + L1MB7 LINE L1 5904 6183 -1 241 88 147 118 chr13 19904393 19904419 -99840479 + MER46A DNA MER2_type 142 166 -70 21 0 0 0 chr13 19904630 19904651 -99840247 + AT_rich Low_complexity Low_complexity 1 21 0 2556 171 28 19 chr13 19905692 19906223 -99838675 - L1MA9 LINE L1 -2217 3929 3394 * 6660 164 52 15 chr13 19906218 19908356 -99836542 + L1MA9 LINE L1 3943 6164 -148 306 0 0 0 chr13 19908356 19908390 -99836508 + (CA)n Simple_repeat Simple_repeat 1 34 0 6660 164 52 15 chr13 19908390 19908472 -99836426 + L1MA9 LINE L1 6164 6242 -70 21 36 0 0 chr13 19908498 19908526 -99836372 + AT_rich Low_complexity Low_complexity 1 28 0 2071 141 0 3 chr13 19908594 19908891 -99836007 + AluJo SINE Alu 1 296 -16 2327 88 0 20 chr13 19909396 19909702 -99835196 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 19910369 19910478 -99834420 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 19910685 19910800 -99834098 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 19912959 19913057 -99831841 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 19913170 19913219 -99831679 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 19914152 19914201 -99830697 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 19914203 19914352 -99830546 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 19914511 19914807 -99830091 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 19914841 19915070 -99829828 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 19915252 19915734 -99829164 - L1MB3 LINE L1 0 6183 5712 208 365 45 5 chr13 19915828 19916050 -99828848 - L2 LINE L2 -662 2652 2422 2276 101 3 3 chr13 19916218 19916516 -99828382 + AluSq SINE Alu 6 303 -10 183 42 0 0 chr13 19916595 19916619 -99828279 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 325 380 0 0 chr13 19916813 19916971 -99827927 - L3 LINE CR1 -366 1211 1054 298 256 24 32 chr13 19917375 19917500 -99827398 - MIR SINE MIR -119 143 20 268 330 41 0 chr13 19918057 19918154 -99826744 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 19918363 19918538 -99826360 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 19918758 19918817 -99826081 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 19918871 19918959 -99825939 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 19919354 19919496 -99825402 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 19919583 19919757 -99825141 + MER5A DNA MER1_type 1 159 -30 2540 61 48 40 chr13 19920161 19920540 -99824358 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 19921452 19921578 -99823320 + L3 LINE CR1 3 130 -1447 530 166 0 151 chr13 19921734 19921873 -99823025 + MLT2D LTR ERVL 295 412 -2 2043 66 0 0 chr13 19922166 19922407 -99822491 + AluY SINE Alu 1 241 -70 194 316 103 32 chr13 19923164 19923319 -99821579 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 19923694 19923778 -99821120 + A-rich Low_complexity Low_complexity 4 85 0 377 51 25 38 chr13 19925982 19926061 -99818837 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1050 187 72 59 chr13 19926216 19926428 -99818470 + L1MA9 LINE L1 5946 6179 -121 324 0 0 0 chr13 19926428 19926464 -99818434 + (CA)n Simple_repeat Simple_repeat 1 36 0 1050 187 72 59 chr13 19926464 19926588 -99818310 + L1MA9 LINE L1 6179 6300 0 2071 141 0 3 chr13 19926668 19926965 -99817933 + AluJo SINE Alu 1 296 -16 2293 91 0 23 chr13 19927470 19927777 -99817121 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 19928444 19928553 -99816345 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 19928760 19928875 -99816023 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 19931034 19931132 -99813766 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 19931245 19931294 -99813604 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 19932227 19932276 -99812622 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 19932278 19932427 -99812471 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 19932586 19932882 -99812016 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 19932916 19933145 -99811753 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 19933327 19933809 -99811089 - L1MB3 LINE L1 0 6183 5712 208 365 45 5 chr13 19933903 19934125 -99810773 - L2 LINE L2 -662 2652 2422 1996 127 0 10 chr13 19934293 19934584 -99810314 + AluSq SINE Alu 6 293 -20 2189 84 34 7 chr13 19934598 19934895 -99810003 + AluY SINE Alu 1 305 -6 2717 181 81 41 chr13 19935327 19936424 -99808474 + pTR5 LTR ERV1 11 581 -133 234 273 0 15 chr13 19937092 19937158 -99807740 - L1MC5 LINE L1 -48 7913 7849 1328 194 113 40 chr13 19937442 19937788 -99807110 - MLT1A2 LTR MaLR 0 374 4 496 284 68 4 chr13 19937793 19938067 -99806831 - L1MC4 LINE L1 -387 7655 7260 370 239 138 0 chr13 19938172 19938310 -99806588 - L1ME4a LINE L1 0 6121 5965 324 247 0 12 chr13 19938761 19938846 -99806052 + MER5A DNA MER1_type 26 109 -80 464 311 45 0 chr13 19939100 19939277 -99805621 + MIR SINE MIR 78 262 0 4777 158 35 22 chr13 19941462 19942352 -99802546 - L1MB3 LINE L1 0 6183 5283 649 298 44 116 chr13 19944712 19945125 -99799773 + L2 LINE L2 2884 3266 -6 4314 126 88 45 chr13 19945474 19946227 -99798671 + LTR1 LTR ERV1 1 785 0 181 275 28 128 chr13 19946288 19946397 -99798501 + L2 LINE L2 3127 3224 -48 646 333 185 28 chr13 19946504 19947261 -99797637 - L3 LINE CR1 -665 912 37 4258 111 65 6 chr13 19947973 19948605 -99796293 - L1PA16 LINE L1 -3 6163 5495 22 35 0 0 chr13 19948948 19948977 -99795921 + AT_rich Low_complexity Low_complexity 1 29 0 1662 108 48 4 chr13 19949280 19949548 -99795350 + L1PB4 LINE L1 5333 5612 -544 3416 118 13 104 chr13 19949548 19949630 -99795268 - LTR12 LTR ERV1 -134 580 492 2000 110 18 0 chr13 19949630 19949911 -99794987 - AluY SINE Alu -10 301 16 3416 118 13 104 chr13 19949911 19950465 -99794433 - LTR12 LTR ERV1 -222 492 2 3209 152 42 0 chr13 19950465 19950993 -99793905 + L1PB4 LINE L1 5607 6156 0 284 281 0 0 chr13 19952052 19952116 -99792782 + MER97b DNA MER1_type? 981 1044 -9 2429 80 3 0 chr13 19953450 19953750 -99791148 - AluY SINE Alu -10 301 1 253 250 238 0 chr13 19953750 19953834 -99791064 + MIR3 SINE MIR 102 205 -3 267 283 17 0 chr13 19953917 19953977 -99790921 + L2 LINE L2 3123 3183 -89 1149 158 5 0 chr13 19954031 19954221 -99790677 - L1MA5 LINE L1 0 6300 6110 208 240 60 0 chr13 19956198 19956248 -99788650 + MIR SINE MIR 83 135 -73 201 238 0 0 chr13 19956455 19956497 -99788401 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 19957009 19957030 -99787868 + AT_rich Low_complexity Low_complexity 1 21 0 2286 165 6 15 chr13 19959678 19960107 -99784791 + L1MA6 LINE L1 5621 6050 -250 1018 122 8 141 chr13 19960081 19960343 -99784555 + L1MB8 LINE L1 5899 6125 -53 * 34 0 0 0 chr13 19960343 19960377 -99784521 + AT_rich Low_complexity Low_complexity 1 34 0 2365 50 3 23 chr13 19960617 19960919 -99783979 + AluY SINE Alu 1 296 -15 189 274 0 0 chr13 19960981 19961032 -99783866 - L2 LINE L2 -1012 2302 2252 2336 74 3 16 chr13 19961348 19961660 -99783238 - AluY SINE Alu -3 308 1 196 326 153 0 chr13 19961664 19961762 -99783136 + L2 LINE L2 3197 3309 -4 2489 77 0 0 chr13 19962054 19962364 -99782534 - AluY SINE Alu -1 310 1 1560 177 27 17 chr13 19962652 19962951 -99781947 - AluJo SINE Alu -10 302 1 2399 70 0 16 chr13 19962951 19963266 -99781632 - AluY SINE Alu -1 310 1 643 109 22 51 chr13 19963272 19963410 -99781488 - L1MB8 LINE L1 0 6178 6045 3087 147 5 49 chr13 19963580 19964150 -99780748 - L1MA10 LINE L1 0 6334 5790 2581 211 116 33 chr13 19964169 19964919 -99779979 + MER21B LTR ERV1 12 823 -40 284 269 13 0 chr13 19964990 19965068 -99779830 - L1MA10 LINE L1 -385 5783 5705 2449 59 0 3 chr13 19965156 19965460 -99779438 - AluY SINE Alu -6 305 3 691 0 45 0 chr13 19966089 19966178 -99778720 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1876 153 0 0 chr13 19966188 19966462 -99778436 - AluSx SINE Alu -38 274 1 219 139 0 0 chr13 19966934 19966970 -99777928 + (TC)n Simple_repeat Simple_repeat 2 37 0 214 260 0 39 chr13 19967183 19967260 -99777638 + (TCTCTG)n Simple_repeat Simple_repeat 4 77 0 402 281 59 51 chr13 19968280 19968499 -99776399 - MIR SINE MIR -33 229 11 794 56 0 1 chr13 19970827 19971104 -99773794 + AluY SINE Alu 15 327 0 667 291 36 47 chr13 19971424 19971689 -99773209 - MIR SINE MIR -1 261 5 21 71 0 0 chr13 19971978 19972020 -99772878 + AT_rich Low_complexity Low_complexity 1 42 0 2218 95 0 26 chr13 19972020 19972324 -99772574 - AluSq SINE Alu -17 296 1 2617 105 3 6 chr13 19972687 19973050 -99771848 - L1PB1 LINE L1 -7 6860 6499 498 126 0 27 chr13 19973051 19973162 -99771736 + (TA)n Simple_repeat Simple_repeat 1 108 0 317 100 117 0 chr13 19973162 19973222 -99771676 - L1PB1 LINE L1 -360 6507 6441 44931 38 2 6 chr13 19973225 19979405 -99765493 - L1PA3 LINE L1 0 6155 1 15686 168 35 11 chr13 19979405 19984621 -99760277 - L1PB1 LINE L1 -412 6455 1102 1545 141 114 15 chr13 19984649 19984912 -99759986 - AluJo SINE Alu -23 289 1 237 234 135 50 chr13 19984919 19985060 -99759838 - L1ME LINE L1 -392 5761 5609 2255 99 0 3 chr13 19985081 19985375 -99759523 - AluY SINE Alu -16 295 3 351 273 146 19 chr13 19985681 19985996 -99758902 - L1ME LINE L1 -805 5324 4970 428 256 45 23 chr13 19986247 19986423 -99758475 - L1ME LINE L1 -4980 1139 960 207 162 48 9 chr13 19986428 19986533 -99758365 + (TA)n Simple_repeat Simple_repeat 1 109 0 818 178 0 0 chr13 19986549 19986684 -99758214 - FRAM SINE Alu -5 171 37 826 297 111 46 chr13 19986835 19987546 -99757352 - L1ME LINE L1 -5328 791 35 2226 108 3 6 chr13 19988107 19988421 -99756477 + AluSp SINE Alu 1 313 0 214 344 0 0 chr13 19988538 19988599 -99756299 - L2 LINE L2 -26 3287 3227 201 171 0 0 chr13 19989358 19989393 -99755505 + A-rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 19991126 19991148 -99753750 + AT_rich Low_complexity Low_complexity 1 22 0 565 196 0 105 chr13 19991854 19992007 -99752891 - Charlie1 DNA MER1_type -2 2759 2623 * 776 236 107 9 chr13 19991994 19992210 -99752688 - Charlie1 DNA MER1_type -2522 239 3 282 366 53 0 chr13 19992292 19992423 -99752475 + MIR SINE MIR 8 145 -117 1581 172 0 0 chr13 19993642 19993910 -99750988 - AluSx SINE Alu -14 298 31 1582 188 30 73 chr13 19993911 19994309 -99750589 - LTR12 LTR ERV1 -234 480 100 278 209 57 76 chr13 19994313 19994418 -99750480 - AluS SINE Alu -228 75 1 1424 142 69 76 chr13 19994426 19994715 -99750183 - AluJo SINE Alu -14 288 2 275 289 73 35 chr13 19994722 19994875 -99750023 + MIR SINE MIR 30 198 -10 224 363 22 0 chr13 19995059 19995150 -99749748 - MIR SINE MIR -93 115 23 * 984 245 4 13 chr13 19995147 19995380 -99749518 + MIR SINE MIR 32 262 0 386 269 11 0 chr13 19998870 19998963 -99745935 + MIR SINE MIR 120 213 -49 459 0 0 0 chr13 19999370 19999421 -99745477 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 183 42 0 0 chr13 19999421 19999445 -99745453 + (TC)n Simple_repeat Simple_repeat 1 24 0 2193 82 14 0 chr13 19999445 19999738 -99745160 - AluY SINE Alu -14 297 1 266 235 74 49 chr13 20000080 20000161 -99744737 - L2 LINE L2 0 3313 3231 284 0 28 0 chr13 20001486 20001522 -99743376 + (TG)n Simple_repeat Simple_repeat 2 38 0 306 298 150 9 chr13 20002690 20002834 -99742064 + MIR SINE MIR 13 162 -67 751 288 212 15 chr13 20003141 20003999 -99740899 - L2 LINE L2 -5 3308 2271 321 47 0 0 chr13 20005366 20005409 -99739489 + (CA)n Simple_repeat Simple_repeat 1 43 0 420 55 0 0 chr13 20005598 20005653 -99739245 + (TG)n Simple_repeat Simple_repeat 2 56 0 427 188 22 28 chr13 20006683 20006864 -99738034 + (CATA)n Simple_repeat Simple_repeat 1 180 0 452 247 6 13 chr13 20006912 20007355 -99737543 + (CA)n Simple_repeat Simple_repeat 1 439 0 271 261 15 0 chr13 20007392 20007526 -99737372 + (CA)n Simple_repeat Simple_repeat 1 136 0 2178 69 7 10 chr13 20009276 20009586 -99735312 + AluY SINE Alu 1 309 0 525 146 0 0 chr13 20009900 20009982 -99734916 + AluS SINE Alu 2 83 -230 1797 114 66 0 chr13 20010213 20010484 -99734414 - AluSx SINE Alu -19 293 5 23 54 0 0 chr13 20012800 20012837 -99732061 + AT_rich Low_complexity Low_complexity 1 37 0 287 238 38 12 chr13 20013381 20013461 -99731437 + MER5A DNA MER1_type 102 183 -6 411 228 203 19 chr13 20013551 20013709 -99731189 + MER5A DNA MER1_type 1 187 -2 514 269 167 6 chr13 20013723 20013879 -99731019 - MER5A DNA MER1_type -5 184 4 183 289 0 0 chr13 20014091 20014136 -99730762 + L2 LINE L2 3269 3313 0 7310 33 0 5 chr13 20017512 20018370 -99726528 + L1PA4 LINE L1 5301 6154 -1 312 356 46 8 chr13 20019808 20019872 -99725026 + L2 LINE L2 2815 2875 -397 2478 138 74 2 chr13 20019872 20020292 -99724606 - LTR47A LTR ERVL 0 452 3 312 356 46 8 chr13 20020292 20020466 -99724432 + L2 LINE L2 2875 3062 -210 314 280 63 74 chr13 20020950 20021125 -99723773 - MLT1I LTR MaLR -2 407 235 4081 155 93 22 chr13 20021471 20021967 -99722931 - MER6 DNA MER2_type 0 865 289 192 77 0 0 chr13 20021967 20021993 -99722905 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4081 155 93 22 chr13 20021993 20022302 -99722596 - MER6 DNA MER2_type -576 289 3 257 310 100 0 chr13 20022906 20023006 -99721892 - L2 LINE L2 -40 3273 3164 206 273 156 13 chr13 20023205 20023282 -99721616 + L2 LINE L2 3185 3272 0 644 100 8 0 chr13 20023471 20023591 -99721307 + (TG)n Simple_repeat Simple_repeat 2 122 0 1677 166 0 16 chr13 20025176 20025483 -99719415 + AluJb SINE Alu 1 302 -10 378 381 40 6 chr13 20026052 20026225 -99718673 - MER5A DNA MER1_type -10 179 1 2132 112 3 3 chr13 20027863 20028175 -99716723 + AluSx SINE Alu 1 312 0 275 338 49 56 chr13 20028487 20028792 -99716106 + L2 LINE L2 3005 3307 -6 229 181 57 48 chr13 20029369 20029474 -99715424 + MER113 DNA MER1_type? 115 220 -301 319 356 9 0 chr13 20029563 20029678 -99715220 + MIR SINE MIR 35 150 -112 1634 177 27 7 chr13 20030530 20030829 -99714069 + AluJb SINE Alu 1 305 -7 22 0 0 0 chr13 20030831 20030853 -99714045 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr13 20031052 20031093 -99713805 + AT_rich Low_complexity Low_complexity 1 41 0 254 314 83 58 chr13 20031626 20031942 -99712956 - L2 LINE L2 -218 3054 2716 250 319 154 21 chr13 20032312 20032500 -99712398 + MIR SINE MIR 44 256 -6 419 35 18 0 chr13 20032664 20032721 -99712177 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 275 305 150 55 chr13 20032866 20033066 -99711832 + L2 LINE L2 2263 2481 -833 2261 85 0 0 chr13 20033229 20033524 -99711374 - AluY SINE Alu -16 295 1 1191 263 83 97 chr13 20034089 20034790 -99710108 + MER21B LTR ERV1 24 714 -149 217 327 0 0 chr13 20035267 20035319 -99709579 - L3 LINE CR1 -7 1570 1519 194 216 0 0 chr13 20035330 20035367 -99709531 + L2 LINE L2 3276 3312 -1 180 246 40 103 chr13 20035365 20035491 -99709407 - MIR SINE MIR -73 135 18 * 195 348 29 0 chr13 20036580 20036649 -99708249 + MIR SINE MIR 79 149 -113 5999 121 234 85 chr13 20036686 20038163 -99706735 - pTR5 LTR ERV1 0 2438 743 496 268 0 0 chr13 20039393 20039505 -99705393 - MIR SINE MIR -88 174 63 275 268 24 102 chr13 20039729 20039856 -99705042 - MLT1L LTR MaLR -248 367 251 665 152 0 9 chr13 20040369 20040474 -99704424 - AluSg/x SINE Alu -13 299 196 278 342 36 9 chr13 20040476 20040604 -99704294 - MIR SINE MIR -62 146 18 220 194 0 0 chr13 20041695 20041731 -99703167 + polypurine Low_complexity Low_complexity 4 39 0 275 292 91 7 chr13 20042022 20042176 -99702722 + MER91A DNA MER1_type 27 193 -3 189 366 14 0 chr13 20042512 20042583 -99702315 + MIR SINE MIR 158 229 -33 2104 161 106 3 chr13 20043771 20044157 -99700741 - MSTB LTR MaLR 0 426 1 1405 190 52 78 chr13 20044324 20044724 -99700174 + MLT1B LTR MaLR 1 390 0 2209 73 14 10 chr13 20045371 20045660 -99699238 + AluY SINE Alu 1 290 -21 234 0 0 0 chr13 20045660 20045686 -99699212 + (TA)n Simple_repeat Simple_repeat 2 27 0 225 0 0 0 chr13 20046244 20046269 -99698629 + (T)n Simple_repeat Simple_repeat 1 25 0 2182 110 7 23 chr13 20047021 20047330 -99697568 - AluSx SINE Alu -8 304 1 344 310 23 18 chr13 20047885 20048056 -99696842 + GA-rich Low_complexity Low_complexity 2 173 0 181 250 42 0 chr13 20049247 20049295 -99695603 - MIR3 SINE MIR -6 202 153 266 360 18 0 chr13 20049404 20049518 -99695380 - MIR SINE MIR -124 138 23 419 35 18 0 chr13 20050587 20050644 -99694254 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 220 305 150 55 chr13 20050789 20050989 -99693909 + L2 LINE L2 2263 2481 -833 1910 145 3 0 chr13 20051153 20051443 -99693455 - AluSx SINE Alu -16 296 6 222 292 100 17 chr13 20051601 20051721 -99693177 + MIR SINE MIR 67 196 -66 2162 123 0 0 chr13 20051834 20052126 -99692772 - AluSx SINE Alu -20 292 1 2294 134 3 0 chr13 20052922 20053265 -99691633 - L1PA16 LINE L1 -9 6157 5814 786 144 0 0 chr13 20053408 20053533 -99691365 - L1PA16 LINE L1 -558 5608 5484 219 304 14 108 chr13 20053590 20053651 -99691247 - L2 LINE L2 0 3272 3207 2167 81 33 0 chr13 20053651 20053923 -99690975 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 20053925 20053954 -99690944 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 219 304 14 108 chr13 20053954 20054037 -99690861 - L2 LINE L2 -66 3206 3139 466 228 53 53 chr13 20054388 20054577 -99690321 - L2 LINE L2 0 3313 3125 1148 249 150 3 chr13 20055529 20055960 -99688938 + MER110A LTR ERV1 3 477 0 2016 153 35 3 chr13 20056068 20056485 -99688413 + L1MC2 LINE L1 5185 5614 -719 462 170 203 17 chr13 20056485 20056610 -99688288 + MLT1A1 LTR MaLR 1 161 -213 6715 94 8 9 chr13 20056616 20056893 -99688005 + L1PA10 LINE L1 4686 4962 -1206 2268 86 0 30 chr13 20056893 20057197 -99687701 + AluY SINE Alu 1 295 -16 6715 94 8 9 chr13 20057197 20058375 -99686523 + L1PA10 LINE L1 4962 6136 -32 714 141 70 8 chr13 20058583 20058711 -99686187 + MLT1A1 LTR MaLR 226 361 -4 3577 169 37 23 chr13 20058716 20059416 -99685482 + L1MC2 LINE L1 5626 6335 -9 276 30 0 0 chr13 20061524 20061557 -99683341 + (TG)n Simple_repeat Simple_repeat 2 34 0 2002 148 3 3 chr13 20061672 20061970 -99682928 + AluJb SINE Alu 1 298 -14 312 252 72 65 chr13 20062178 20062363 -99682535 + LTR48B LTR ERV1 337 634 -10 308 231 141 16 chr13 20063791 20063912 -99680986 - MIR SINE MIR -16 246 111 621 260 39 0 chr13 20064152 20064333 -99680565 + MER20 DNA MER1_type 31 218 -1 2107 104 10 7 chr13 20064651 20064940 -99679958 + AluSg1 SINE Alu 1 290 -19 237 291 88 34 chr13 20065099 20065247 -99679651 + L2 LINE L2 2895 3050 -263 220 288 0 0 chr13 20065272 20065331 -99679567 + L2 LINE L2 3183 3241 -72 404 126 42 36 chr13 20065382 20065549 -99679349 + (TG)n Simple_repeat Simple_repeat 2 169 0 300 120 53 27 chr13 20065654 20065804 -99679094 + (TG)n Simple_repeat Simple_repeat 1 154 0 245 167 52 31 chr13 20065825 20065921 -99678977 + (TG)n Simple_repeat Simple_repeat 1 98 0 4390 126 62 23 chr13 20067272 20068013 -99676885 + LTR1 LTR ERV1 16 785 0 1076 204 50 11 chr13 20069831 20070091 -99674807 + MER33 DNA MER1_type 17 286 -38 189 121 0 0 chr13 20071015 20071048 -99673850 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 2228 122 0 0 chr13 20071957 20072260 -99672638 + AluSx SINE Alu 1 303 -9 327 49 0 0 chr13 20074252 20074293 -99670605 + (TG)n Simple_repeat Simple_repeat 1 41 0 362 57 19 0 chr13 20074409 20074462 -99670436 + (TG)n Simple_repeat Simple_repeat 1 54 0 2177 177 64 3 chr13 20074945 20075342 -99669556 + MSTB LTR MaLR 1 356 -8 28 0 0 0 chr13 20075773 20075801 -99669097 + AT_rich Low_complexity Low_complexity 1 28 0 1233 228 62 34 chr13 20076747 20077103 -99667795 - MLT1A2 LTR MaLR -8 366 1 945 164 0 7 chr13 20077371 20077523 -99667375 - AluJb SINE Alu -20 292 142 262 224 48 79 chr13 20080794 20080883 -99664015 + L1ME4a LINE L1 5959 6042 -79 2464 83 0 3 chr13 20080883 20081195 -99663703 - AluY SINE Alu 0 311 1 262 224 48 79 chr13 20081195 20081270 -99663628 + L1ME4a LINE L1 6042 6118 -3 661 320 34 10 chr13 20081607 20081904 -99662994 + L1M4 LINE L1 3562 3865 -2281 1008 246 98 20 chr13 20082422 20082862 -99662036 + L1M4 LINE L1 3997 4470 -1676 10141 160 42 15 chr13 20082862 20084671 -99660227 + Tigger4(Zombi) DNA MER2_type 1 1858 -873 299 195 171 0 chr13 20085740 20085822 -99659076 - MER5A DNA MER1_type -80 109 14 319 98 0 0 chr13 20087013 20087064 -99657834 + L1MA3 LINE L1 6124 6174 -131 272 313 0 0 chr13 20087887 20087954 -99656944 + polypyrimidine Low_complexity Low_complexity 3 69 0 2263 257 69 35 chr13 20088105 20088973 -99655925 - L1ME1 LINE L1 -15 6220 5323 504 240 76 20 chr13 20088984 20089234 -99655664 - L1ME1 LINE L1 -1229 4986 4723 513 272 86 50 chr13 20090428 20090847 -99654051 - L1ME1 LINE L1 -1907 4308 3875 670 300 69 23 chr13 20090868 20091391 -99653507 - L1ME1 LINE L1 -3248 2967 2421 226 197 118 0 chr13 20091387 20091463 -99653435 - L1ME1 LINE L1 -3707 2508 2424 * 2383 96 0 0 chr13 20091515 20091817 -99653081 - AluSg SINE Alu -8 302 1 277 213 124 41 chr13 20091817 20091986 -99652912 - L1ME1 LINE L1 -4099 2297 2115 367 137 27 0 chr13 20092150 20092223 -99652675 + GA-rich Low_complexity Low_complexity 2 76 0 359 282 143 32 chr13 20092259 20092448 -99652450 - L1ME1 LINE L1 -4595 1801 1584 2156 97 6 59 chr13 20092448 20092769 -99652129 - AluSq SINE Alu -9 304 1 359 282 143 32 chr13 20092769 20092795 -99652103 - L1ME1 LINE L1 -4812 1584 1562 1295 174 98 98 chr13 20092838 20093299 -99651599 + LTR1 LTR ERV1 1 461 -324 980 119 26 7 chr13 20093302 20093453 -99651445 + LTR1 LTR ERV1 632 785 0 272 273 120 24 chr13 20093521 20093730 -99651168 - L1ME1 LINE L1 -4897 1499 1271 616 271 42 47 chr13 20094287 20094479 -99650419 + MER58D DNA MER1_type 2 192 -194 331 281 0 22 chr13 20094479 20094568 -99650330 + MLT1D LTR MaLR 1 87 -539 987 236 65 11 chr13 20094616 20094879 -99650019 + MLT1C LTR MaLR 1 277 -190 676 160 9 0 chr13 20095034 20095140 -99649758 - MLT1D LTR MaLR -398 107 1 693 169 30 60 chr13 20095141 20095323 -99649575 + MLT1C LTR MaLR 304 463 -4 1180 227 15 91 chr13 20095349 20095754 -99649144 + MLT1D LTR MaLR 132 505 0 846 180 52 21 chr13 20095754 20095947 -99648951 + MER58D DNA MER1_type 188 386 0 2106 186 10 18 chr13 20096342 20096741 -99648157 + MSTD LTR MaLR 1 396 0 443 277 0 27 chr13 20097112 20097296 -99647602 + (TG)n Simple_repeat Simple_repeat 2 180 0 386 309 0 0 chr13 20097328 20097496 -99647402 + (TG)n Simple_repeat Simple_repeat 2 169 0 357 286 17 11 chr13 20097572 20097750 -99647148 + (TG)n Simple_repeat Simple_repeat 1 179 0 239 0 32 0 chr13 20099436 20099467 -99645431 + (CA)n Simple_repeat Simple_repeat 1 32 0 190 318 112 0 chr13 20100881 20100988 -99643910 - L2 LINE L2 0 3272 3154 243 284 99 0 chr13 20101804 20101885 -99643013 - L2 LINE L2 -15 3298 3210 210 118 0 0 chr13 20102221 20102255 -99642643 + (A)n Simple_repeat Simple_repeat 1 34 0 1804 141 106 62 chr13 20102374 20102664 -99642234 - LTR47A LTR ERVL 0 452 135 2126 113 10 7 chr13 20102664 20102973 -99641925 - AluSq SINE Alu -3 310 1 1804 141 106 62 chr13 20102973 20103115 -99641783 - LTR47A LTR ERVL -317 135 1 1949 149 52 19 chr13 20104372 20104735 -99640163 - THE1C LTR MaLR 0 375 1 435 98 0 49 chr13 20104735 20104817 -99640081 - THE1C-int LTR MaLR 0 1580 1503 9063 122 68 9 chr13 20104963 20106349 -99638549 - THE1C-int LTR MaLR -112 1468 1 1863 122 70 57 chr13 20106349 20106719 -99638179 - THE1C LTR MaLR 0 375 1 2300 66 11 0 chr13 20109864 20110188 -99634710 - AluYb8 SINE Alu 0 327 1 2194 123 0 13 chr13 20110835 20111145 -99633753 - AluSx SINE Alu -6 306 1 1668 128 15 11 chr13 20112531 20112796 -99632102 - Tigger2 DNA MER2_type -10 2708 2443 4549 142 16 19 chr13 20112863 20113611 -99631287 - Tigger2 DNA MER2_type -1972 746 1 213 139 0 0 chr13 20114389 20114432 -99630466 + (TC)n Simple_repeat Simple_repeat 2 44 0 1701 113 52 8 chr13 20115284 20115558 -99629340 - AluSx SINE Alu 0 312 38 229 368 26 0 chr13 20116310 20116424 -99628474 + MIR SINE MIR 32 148 -114 269 140 18 0 chr13 20116588 20116645 -99628253 + CT-rich Low_complexity Low_complexity 1 58 0 1907 129 14 10 chr13 20116645 20116940 -99627958 - AluSx SINE Alu -4 308 13 183 42 0 0 chr13 20116940 20116964 -99627934 + (GCCTG)n Simple_repeat Simple_repeat 1 24 0 2382 98 0 0 chr13 20116969 20117266 -99627632 - AluSx SINE Alu -11 301 5 186 118 0 0 chr13 20118768 20118802 -99626096 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 68 0 0 chr13 20119830 20119874 -99625024 - AluSp/q SINE Alu -36 267 224 318 111 0 0 chr13 20120648 20120693 -99624205 - L1MA5 LINE L1 -412 5888 5844 2950 260 143 40 chr13 20120693 20122359 -99622539 - L1M4 LINE L1 -768 5378 3540 847 250 14 111 chr13 20122367 20122711 -99622187 + MLT1D-int LTR MaLR 1055 1365 -6 730 176 38 109 chr13 20122720 20122958 -99621940 + MLT1D LTR MaLR 1 221 -284 287 326 45 7 chr13 20122981 20123247 -99621651 + L2 LINE L2 2933 3272 0 202 274 32 0 chr13 20123980 20124042 -99620856 - L2 LINE L2 0 3272 3209 2469 65 13 3 chr13 20124367 20124674 -99620224 - AluY SINE Alu -1 310 1 2191 91 0 60 chr13 20124977 20125296 -99619602 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 20125296 20125321 -99619577 + AT_rich Low_complexity Low_complexity 1 25 0 3077 127 52 2 chr13 20125321 20125816 -99619082 - L1MA3 LINE L1 0 6305 5786 713 93 0 9 chr13 20125916 20126024 -99618874 + L1PA8 LINE L1 6066 6172 0 1985 118 75 31 chr13 20127059 20127408 -99617490 - THE1B LTR MaLR 0 364 1 11518 105 6 1 chr13 20127408 20128981 -99615917 - THE1B-int LTR MaLR 0 1580 1 1586 147 28 28 chr13 20128981 20129266 -99615632 - THE1B LTR MaLR 0 364 80 449 119 81 0 chr13 20129397 20129557 -99615341 + (TA)n Simple_repeat Simple_repeat 1 173 0 474 180 19 1 chr13 20129557 20129661 -99615237 + Tigger4(Zombi) DNA MER2_type 228 2731 0 501 244 12 47 chr13 20129662 20129834 -99615064 + L1ME2 LINE L1 4470 4635 -1511 25 83 0 0 chr13 20129847 20129907 -99614991 + AT_rich Low_complexity Low_complexity 1 60 0 1333 262 33 5 chr13 20129933 20130360 -99614538 + L1ME2 LINE L1 4615 5053 -1093 1258 196 4 43 chr13 20130360 20130641 -99614257 + AluSg SINE Alu 39 308 -2 3182 249 51 8 chr13 20130642 20131711 -99613187 + L1ME2 LINE L1 5031 6153 -11 336 312 109 10 chr13 20131906 20132108 -99612790 + MIR SINE MIR 35 256 -6 199 296 45 61 chr13 20132146 20132278 -99612620 + L2 LINE L2 2932 3061 -211 1511 101 0 10 chr13 20132326 20132535 -99612363 - AluY SINE Alu -10 301 95 342 339 8 0 chr13 20185685 20185812 -99559086 - L2 LINE L2 -708 2606 2479 4061 154 112 96 chr13 20186358 20186652 -99558246 - L1MC3 LINE L1 -7 7778 7490 2070 87 0 4 chr13 20186652 20186929 -99557969 - AluY SINE Alu -15 296 21 4061 154 112 96 chr13 20186929 20187213 -99557685 - L1MC3 LINE L1 -295 7490 7212 347 256 0 0 chr13 20187213 20187295 -99557603 - MLT1F1 LTR MaLR -450 117 36 4061 154 112 96 chr13 20187295 20187692 -99557206 - L1MC3 LINE L1 -573 7212 6704 198 319 104 39 chr13 20187845 20188105 -99556793 + L2 LINE L2 2322 2598 -716 966 300 61 34 chr13 20188565 20188705 -99556193 - L2 LINE L2 -4 3309 3174 1042 181 229 3 chr13 20188705 20188997 -99555901 + MER46B DNA MER2_type 4 236 0 966 300 61 34 chr13 20188997 20189266 -99555632 - L2 LINE L2 -139 3174 2889 688 295 182 12 chr13 20189269 20189588 -99555310 - L2 LINE L2 -973 2341 1969 751 313 40 4 chr13 20189615 20189842 -99555056 - MIR SINE MIR -22 240 6 585 316 73 25 chr13 20189837 20190236 -99554662 - L2 LINE L2 -1332 1982 1565 * 192 307 40 0 chr13 20192415 20192490 -99552408 - MIR3 SINE MIR -24 184 107 504 272 92 32 chr13 20192888 20193105 -99551793 - MIR SINE MIR -10 252 23 258 287 0 0 chr13 20194103 20194246 -99550652 + (TA)n Simple_repeat Simple_repeat 1 143 0 2839 154 19 4 chr13 20196415 20196890 -99548008 - L1PB4 LINE L1 0 6156 5675 1176 171 0 33 chr13 20196891 20197102 -99547796 - AluJo SINE Alu -8 304 101 1838 160 6 25 chr13 20197255 20197573 -99547325 + AluJb SINE Alu 1 312 0 2198 120 13 0 chr13 20198920 20199220 -99545678 + AluSc SINE Alu 1 304 -5 2606 193 38 13 chr13 20202859 20203389 -99541509 - MER44D DNA MER2_type 0 605 8 201 311 194 0 chr13 20203419 20203522 -99541376 - MIR SINE MIR -74 188 66 240 282 0 14 chr13 20204287 20204358 -99540540 - MIR SINE MIR -66 142 73 244 241 0 0 chr13 20204391 20204449 -99540449 + T-rich Low_complexity Low_complexity 1 58 0 208 342 49 60 chr13 20205961 20206391 -99538507 - L2 LINE L2 -6 3266 2842 207 273 75 62 chr13 20207773 20207934 -99536964 + MIR SINE MIR 50 212 -50 437 302 47 31 chr13 20208129 20208387 -99536511 + L3 LINE CR1 1315 1576 -1 269 331 50 14 chr13 20208545 20208684 -99536214 - L3 LINE CR1 -2 1575 1432 186 254 36 0 chr13 20210579 20210634 -99534264 - L2 LINE L2 -2 3311 3255 240 175 63 63 chr13 20212614 20212677 -99532221 - MLT1I LTR MaLR -33 376 314 2539 72 0 0 chr13 20213228 20213535 -99531363 - AluY SINE Alu -4 307 1 212 329 127 0 chr13 20214846 20214925 -99529973 + L2 LINE L2 3147 3235 -37 309 165 16 50 chr13 20214972 20215093 -99529805 + GA-rich Low_complexity Low_complexity 4 120 0 187 281 130 75 chr13 20217126 20217511 -99527387 + L2 LINE L2 2572 2977 -337 472 293 213 10 chr13 20217927 20218227 -99526671 + MLT1J LTR MaLR 1 361 -150 356 274 10 0 chr13 20219162 20219264 -99525634 - MIR SINE MIR -112 150 48 1650 188 38 0 chr13 20219854 20220142 -99524756 + AluJb SINE Alu 5 303 -9 1746 118 57 18 chr13 20223192 20223471 -99521427 - AluSx SINE Alu -10 302 13 231 86 0 29 chr13 20224770 20224805 -99520093 - HAL1 LINE L1 -2188 319 286 2706 127 26 5 chr13 20225670 20226089 -99518809 - MSTA LTR MaLR 0 428 1 259 273 0 45 chr13 20227243 20227331 -99517567 + MER112 DNA MER1_type 144 227 -33 1431 219 95 24 chr13 20229625 20229995 -99514903 + MSTD LTR MaLR 1 396 0 6860 239 35 35 chr13 20229999 20231726 -99513172 + MSTD-int LTR MaLR 4 1730 -5 1310 204 139 14 chr13 20231731 20232083 -99512815 + MSTD LTR MaLR 1 396 0 335 169 14 0 chr13 20232257 20232328 -99512570 + CT-rich Low_complexity Low_complexity 1 72 0 189 0 0 0 chr13 20232328 20232349 -99512549 + (TTTCC)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chr13 20232370 20232399 -99512499 + AT_rich Low_complexity Low_complexity 1 29 0 411 163 25 0 chr13 20233788 20233868 -99511030 - AluS SINE Alu -1 308 227 282 29 0 0 chr13 20233886 20233921 -99510977 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2074 110 0 24 chr13 20233921 20234208 -99510690 - AluSx SINE Alu -32 280 1 264 200 20 60 chr13 20234275 20234375 -99510523 - L1MC5 LINE L1 -48 7913 7818 646 75 0 0 chr13 20234595 20234689 -99510209 - AluY SINE Alu -1 310 217 229 343 75 8 chr13 20235585 20235719 -99509179 + MIR SINE MIR 39 181 -81 3345 187 31 26 chr13 20235982 20236698 -99508200 + LTR62 LTR ERVK 1 719 0 214 282 19 58 chr13 20236965 20237068 -99507830 - MIR SINE MIR -94 114 16 211 343 12 4 chr13 20237976 20238093 -99506805 + MIR SINE MIR 37 154 -67 900 259 34 7 chr13 20239461 20239754 -99505144 + L1M4 LINE L1 2950 3250 -2896 1270 189 95 5 chr13 20240773 20241201 -99503697 - LTR54 LTR ERV1 -1 497 1 25 83 0 0 chr13 20242115 20242175 -99502723 + AT_rich Low_complexity Low_complexity 1 60 0 227 79 26 0 chr13 20243693 20243731 -99501167 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1635 163 13 67 chr13 20243889 20244202 -99500696 + AluJo SINE Alu 13 308 -4 234 323 113 8 chr13 20245459 20245583 -99499315 + MIR SINE MIR 92 228 -34 2104 118 3 3 chr13 20245635 20245931 -99498967 - AluSx SINE Alu -16 296 1 276 255 10 82 chr13 20248086 20248184 -99496714 - MIR SINE MIR -18 244 154 351 113 0 0 chr13 20251621 20251674 -99493224 + (TG)n Simple_repeat Simple_repeat 2 54 0 1560 185 18 14 chr13 20251679 20251960 -99492938 - AluJo SINE Alu -30 282 1 3887 60 2 36 chr13 20252771 20253304 -99491594 - L1PA6 LINE L1 -5 6149 5635 564 249 11 28 chr13 20254117 20254294 -99490604 - MLT1A1 LTR MaLR -15 359 186 1016 173 0 12 chr13 20254309 20254482 -99490416 - FRAM SINE Alu -5 171 1 866 160 0 0 chr13 20254490 20254634 -99490264 - MLT1A1 LTR MaLR -220 145 2 206 328 31 0 chr13 20255273 20255337 -99489561 - L2 LINE L2 -70 3202 3137 344 157 41 27 chr13 20256483 20256630 -99488268 + (CA)n Simple_repeat Simple_repeat 1 149 0 346 211 45 30 chr13 20256641 20256774 -99488124 + (CA)n Simple_repeat Simple_repeat 1 135 0 238 172 35 23 chr13 20256787 20256874 -99488024 + (CA)n Simple_repeat Simple_repeat 1 88 0 875 287 137 45 chr13 20258497 20259030 -99485868 - MLT1G1 LTR MaLR 0 595 14 325 342 9 60 chr13 20259219 20259435 -99485463 - MIR3 SINE MIR -55 207 5 240 300 82 17 chr13 20260728 20260961 -99483937 + L1MEd LINE L1 901 1148 -4971 318 302 20 40 chr13 20261101 20261349 -99483549 + HAL1 LINE L1 1427 1669 -838 180 0 0 0 chr13 20262045 20262065 -99482833 + (TC)n Simple_repeat Simple_repeat 2 21 0 234 0 0 0 chr13 20262074 20262100 -99482798 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2363 73 3 0 chr13 20262103 20262391 -99482507 - AluY SINE Alu -22 289 1 324 351 57 16 chr13 20262403 20262648 -99482250 - L1ME LINE L1 -346 5816 5562 295 301 95 73 chr13 20265672 20266084 -99478814 - L2 LINE L2 -8 3264 2844 26 0 0 0 chr13 20266548 20266574 -99478324 + AT_rich Low_complexity Low_complexity 1 26 0 742 185 64 0 chr13 20266575 20266748 -99478150 - L1MA9 LINE L1 -46 6266 6083 1469 236 87 8 chr13 20266933 20267619 -99477279 + L1ME1 LINE L1 5002 5740 -426 509 244 88 42 chr13 20267714 20267952 -99476946 + L1ME1 LINE L1 5913 6161 -5 332 293 143 7 chr13 20268246 20268393 -99476505 - MIR SINE MIR -3 259 93 1496 274 16 16 chr13 20268664 20269179 -99475719 - L1ME1 LINE L1 -20 6146 5632 524 233 131 64 chr13 20269190 20269753 -99475145 - L1ME LINE L1 -5049 1034 459 234 111 19 56 chr13 20269894 20269948 -99474950 - L1ME LINE L1 -5685 385 334 202 205 26 0 chr13 20270070 20270109 -99474789 + GA-rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 20270910 20270932 -99473966 + AT_rich Low_complexity Low_complexity 1 22 0 678 329 49 23 chr13 20271783 20272087 -99472811 - L2 LINE L2 -4 3309 2998 253 212 96 111 chr13 20272601 20272799 -99472099 - MLT1J LTR MaLR -193 318 124 1327 227 79 67 chr13 20272840 20273374 -99471524 + MLT1F1 LTR MaLR 3 567 0 441 256 140 43 chr13 20274272 20274396 -99470502 - MIR SINE MIR -16 246 135 2166 121 7 7 chr13 20274396 20274703 -99470195 + AluSq SINE Alu 1 307 -6 441 256 140 43 chr13 20274703 20274785 -99470113 - MIR SINE MIR -127 135 20 553 309 45 22 chr13 20275899 20276122 -99468776 + MIR SINE MIR 35 262 0 323 381 23 23 chr13 20276135 20276308 -99468590 - MIR SINE MIR -71 191 19 23 0 0 0 chr13 20276366 20276389 -99468509 + AT_rich Low_complexity Low_complexity 1 23 0 613 348 163 12 chr13 20277085 20277669 -99467229 - L3 LINE CR1 -5 1572 901 358 117 0 39 chr13 20277711 20277788 -99467110 + (TCCCC)n Simple_repeat Simple_repeat 5 78 0 192 305 136 24 chr13 20277789 20278002 -99466896 - L3 LINE CR1 -701 876 640 609 291 110 89 chr13 20278557 20279247 -99465651 + HAL1 LINE L1 897 1608 -899 2293 93 0 7 chr13 20279247 20279547 -99465351 - AluSx SINE Alu -14 298 1 609 291 110 89 chr13 20279547 20279663 -99465235 + HAL1 LINE L1 1608 1720 -787 265 279 158 36 chr13 20280335 20280665 -99464233 + L1M4 LINE L1 2650 3019 -3127 541 352 109 28 chr13 20280698 20281201 -99463697 - L3 LINE CR1 -881 696 153 180 0 0 0 chr13 20281318 20281338 -99463560 + (T)n Simple_repeat Simple_repeat 1 20 0 231 302 73 10 chr13 20281609 20281705 -99463193 - L2 LINE L2 -34 3279 3178 2273 105 26 0 chr13 20284676 20284980 -99459918 + AluSx SINE Alu 1 312 0 335 298 19 10 chr13 20285722 20285826 -99459072 - MER5B DNA MER1_type -73 105 1 2253 186 21 5 chr13 20286570 20286989 -99457909 - MSTB LTR MaLR 0 426 1 514 311 45 70 chr13 20288085 20288533 -99456365 + L1M4 LINE L1 2853 3289 -2857 205 75 50 0 chr13 20289866 20289906 -99454992 + GA-rich Low_complexity Low_complexity 2 43 0 450 0 0 0 chr13 20289910 20289960 -99454938 + (TG)n Simple_repeat Simple_repeat 2 51 0 414 0 0 0 chr13 20290522 20290568 -99454330 + (CA)n Simple_repeat Simple_repeat 2 47 0 247 111 0 0 chr13 20290586 20290622 -99454276 + MLT2C2 LTR ERVL 429 464 0 2134 207 32 22 chr13 20290622 20291159 -99453739 - L1MB7 LINE L1 -256 6164 5623 * 4877 241 87 39 chr13 20291157 20291509 -99453389 - L1MB7 LINE L1 -2002 4380 4046 1543 203 3 20 chr13 20291509 20291804 -99453094 + AluJo SINE Alu 1 290 -22 4877 241 87 39 chr13 20291804 20295453 -99449445 - L1MB7 LINE L1 -2336 4046 68 405 0 0 0 chr13 20295453 20295498 -99449400 + (TG)n Simple_repeat Simple_repeat 2 46 0 4877 241 87 39 chr13 20295498 20295568 -99449330 - L1MB7 LINE L1 -6314 68 3 202 259 17 0 chr13 20297145 20297203 -99447695 + (TA)n Simple_repeat Simple_repeat 1 59 0 210 347 0 16 chr13 20298260 20298381 -99446517 + CT-rich Low_complexity Low_complexity 4 122 0 1085 207 95 0 chr13 20298761 20299015 -99445883 - MER110 LTR ERV1 -172 319 1 1257 246 163 20 chr13 20299813 20300219 -99444679 + L3 LINE CR1 1111 1574 -3 4390 187 48 14 chr13 20300570 20301468 -99443430 - L1MA7 LINE L1 -32 6259 5332 241 296 65 19 chr13 20301546 20301654 -99443244 + L2 LINE L2 3099 3211 -61 897 214 67 0 chr13 20303178 20303379 -99441519 + AluJo SINE Alu 96 308 0 219 184 0 41 chr13 20303972 20304021 -99440877 + CT-rich Low_complexity Low_complexity 4 50 0 21 0 0 0 chr13 20304370 20304391 -99440507 + AT_rich Low_complexity Low_complexity 1 21 0 422 296 122 13 chr13 20305610 20305840 -99439058 + MIR SINE MIR 7 261 -1 186 353 50 34 chr13 20305864 20305983 -99438915 - L2 LINE L2 -193 3079 2959 1196 305 117 54 chr13 20306062 20307212 -99437686 - L2 LINE L2 -444 2870 1611 345 47 0 0 chr13 20307212 20307255 -99437643 + (TG)n Simple_repeat Simple_repeat 2 44 0 1196 305 117 54 chr13 20307255 20307529 -99437369 - L2 LINE L2 -1703 1611 1356 590 262 43 0 chr13 20307562 20307726 -99437172 - MIR SINE MIR -3 259 89 2830 236 85 29 chr13 20308099 20308306 -99436592 - L1ME1 LINE L1 -5 6161 5967 1922 198 3 40 chr13 20308306 20308685 -99436213 - MLT1A1 LTR MaLR 0 365 1 2830 236 85 29 chr13 20308685 20310203 -99434695 - L1ME1 LINE L1 -199 5967 4358 * 3031 186 43 9 chr13 20310187 20310831 -99434067 - L1MC3 LINE L1 0 7785 7120 284 213 11 43 chr13 20310878 20310972 -99433926 + (CATA)n Simple_repeat Simple_repeat 2 92 0 2987 85 28 5 chr13 20310975 20311375 -99433523 - MLT2A2 LTR ERVL -44 409 1 8573 186 44 35 chr13 20311375 20312375 -99432523 - L1MC3 LINE L1 -660 7125 6099 3244 133 54 4 chr13 20312375 20312879 -99432019 - L1PB1 LINE L1 -3 6148 5620 8573 186 44 35 chr13 20312879 20313733 -99431165 - L1MC3 LINE L1 -1686 6099 5254 9333 35 10 3 chr13 20313780 20315631 -99429267 - L1PA3 LINE L1 -2 6153 4293 331 322 119 30 chr13 20317089 20317291 -99427607 - MIR SINE MIR -33 229 10 205 371 36 29 chr13 20317318 20317458 -99427440 + MER91A DNA MER1_type 1 141 -55 24 0 0 0 chr13 20319490 20319514 -99425384 + AT_rich Low_complexity Low_complexity 1 24 0 235 242 150 105 chr13 20321820 20321927 -99422971 - MER5B DNA MER1_type -17 161 43 2504 54 0 0 chr13 20321927 20322223 -99422675 + AluY SINE Alu 1 296 -15 235 242 150 105 chr13 20322223 20322268 -99422630 - MER5B DNA MER1_type -135 43 2 504 232 87 53 chr13 20323216 20323423 -99421475 - MLT1K LTR MaLR -9 579 366 374 169 0 0 chr13 20325222 20325287 -99419611 + Alu SINE Alu 235 299 -3 503 248 24 8 chr13 20325946 20326071 -99418827 - Charlie4 DNA MER1_type -12 1949 1823 385 273 76 35 chr13 20326146 20326344 -99418554 - LTR33 LTR ERVL -1 520 315 23 33 0 0 chr13 20327046 20327076 -99417822 + AT_rich Low_complexity Low_complexity 1 30 0 883 207 35 101 chr13 20329159 20329526 -99415372 - LTR37A LTR ERV1 0 426 84 239 305 17 44 chr13 20329664 20329835 -99415063 - MIR SINE MIR -21 241 3 23 0 0 0 chr13 20330154 20330177 -99414721 + AT_rich Low_complexity Low_complexity 1 23 0 627 211 57 51 chr13 20331164 20331339 -99413559 - MER63A DNA MER1_type -33 177 2 229 257 0 43 chr13 20331346 20331416 -99413482 + L2 LINE L2 3247 3313 0 232 253 172 20 chr13 20331601 20331700 -99413198 - MIR SINE MIR -112 150 37 180 258 45 30 chr13 20333581 20333647 -99411251 - L2 LINE L2 -1046 2268 2202 2096 152 35 11 chr13 20334388 20334763 -99410135 - MLT1B LTR MaLR 0 390 7 663 315 104 41 chr13 20335471 20335934 -99408964 - MLT1J LTR MaLR 0 511 20 2399 176 94 4 chr13 20336903 20337415 -99407483 + MER74A LTR ERVL 1 558 0 233 264 110 22 chr13 20337415 20337506 -99407392 + L2 LINE L2 3212 3310 -3 2211 100 10 0 chr13 20337907 20338019 -99406879 + AluSg SINE Alu 13 122 -188 243 0 0 0 chr13 20338019 20338046 -99406852 + (CA)n Simple_repeat Simple_repeat 2 28 0 2211 100 10 0 chr13 20338046 20338223 -99406675 + AluSg SINE Alu 122 305 -5 350 286 43 31 chr13 20340530 20340691 -99404207 - L3 LINE CR1 -35 1542 1380 494 317 81 52 chr13 20340795 20341180 -99403718 - L3 LINE CR1 -262 1315 920 2092 125 10 0 chr13 20341450 20341745 -99403153 + AluSx SINE Alu 1 298 -14 2488 69 0 19 chr13 20343878 20344195 -99400703 + AluY SINE Alu 1 311 0 209 238 16 16 chr13 20344210 20344273 -99400625 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 219 125 0 0 chr13 20344637 20344677 -99400221 + (TTAGGG)n Simple_repeat Simple_repeat 1 40 0 884 206 111 16 chr13 20344735 20344988 -99399910 - MER58B DNA MER1_type -9 332 56 2267 103 0 16 chr13 20345194 20345504 -99399394 - AluSg SINE Alu -5 305 1 2180 104 24 7 chr13 20345514 20345811 -99399087 - AluSg SINE Alu -8 302 1 311 350 51 10 chr13 20400808 20401005 -99343893 + L3 LINE CR1 685 889 -688 2144 116 0 3 chr13 20401027 20401336 -99343562 + AluSx SINE Alu 1 308 0 379 179 0 48 chr13 20401550 20401634 -99343264 - MIR SINE MIR -115 147 68 423 238 12 133 chr13 20401784 20401822 -99343076 + MIR SINE MIR 19 60 -202 2702 157 0 0 chr13 20401822 20402223 -99342675 + MER57A LTR ERV1 3 403 0 423 238 12 133 chr13 20402223 20402424 -99342474 + MIR SINE MIR 60 229 -33 432 284 112 0 chr13 20402913 20403029 -99341869 - L2 LINE L2 0 3272 3144 184 288 68 17 chr13 20403552 20403611 -99341287 + MER5B DNA MER1_type 80 141 -37 198 344 0 0 chr13 20406351 20406415 -99338483 + L2 LINE L2 3250 3313 0 338 264 181 28 chr13 20406870 20407014 -99337884 - MER5A DNA MER1_type 0 189 24 1676 166 32 32 chr13 20407075 20407383 -99337515 - AluJo SINE Alu 0 312 5 852 194 0 0 chr13 20409625 20409853 -99335045 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 1804 143 0 21 chr13 20411002 20411282 -99333616 + AluJb SINE Alu 9 282 -30 368 276 72 72 chr13 20412318 20412499 -99332399 - MIR SINE MIR -56 206 26 258 32 0 0 chr13 20414031 20414062 -99330836 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 396 59 0 0 chr13 20414801 20414852 -99330046 + (TG)n Simple_repeat Simple_repeat 1 51 0 203 309 229 29 chr13 20415859 20416034 -99328864 - MIR SINE MIR -7 255 46 224 293 0 0 chr13 20416676 20416734 -99328164 - L2 LINE L2 -97 3216 3159 390 234 0 0 chr13 20416793 20416947 -99327951 + (TG)n Simple_repeat Simple_repeat 1 154 0 819 196 68 0 chr13 20417086 20417249 -99327649 + MIR SINE MIR 67 240 -22 249 36 0 0 chr13 20417966 20417994 -99326904 - LTR1 LTR ERV1 0 785 758 490 248 16 31 chr13 20418041 20418170 -99326728 - HUERS-P2 LTR ERV1 -2961 127 1 3781 121 65 67 chr13 20418170 20418945 -99325953 - LTR1 LTR ERV1 0 785 13 601 205 6 99 chr13 20419694 20419865 -99325033 + MER63 DNA MER1_type 1 781 -281 666 103 45 13 chr13 20420038 20420194 -99324704 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 201 270 124 0 chr13 20420195 20420284 -99324614 + MIR3 SINE MIR 103 202 -6 501 275 84 0 chr13 20420364 20420542 -99324356 + L2 LINE L2 3112 3304 -9 389 349 23 0 chr13 20420558 20420687 -99324211 - MIR3 SINE MIR -62 146 15 223 317 108 36 chr13 20421059 20421226 -99323672 - L2 LINE L2 -24 3289 3111 549 192 144 0 chr13 20422993 20423118 -99321780 + LTR54B LTR ERV1 1 143 -355 1230 149 18 18 chr13 20423145 20423367 -99321531 + LTR54 LTR ERV1 289 510 0 464 129 26 17 chr13 20424077 20424193 -99320705 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 457 176 0 0 chr13 20424195 20424280 -99320618 + (TATG)n Simple_repeat Simple_repeat 2 86 0 267 271 14 0 chr13 20424719 20424789 -99320109 + L2 LINE L2 3240 3310 -3 736 261 14 21 chr13 20424888 20425220 -99319678 - MLT1A2 LTR MaLR 0 374 1 306 339 43 0 chr13 20425994 20426109 -99318789 - MER91C DNA MER1_type 0 140 21 708 316 95 17 chr13 20426329 20426801 -99318097 + LTR33 LTR ERVL 13 521 0 195 263 0 0 chr13 20427093 20427131 -99317767 + L2 LINE L2 3184 3221 -92 1346 146 175 5 chr13 20427680 20428088 -99316810 + MER44D DNA MER2_type 1 536 -69 1986 204 123 82 chr13 20428090 20428805 -99316093 + LTR1B LTR ERV1 2 745 -81 536 100 0 50 chr13 20428890 20428970 -99315928 + MER44D DNA MER2_type 530 605 0 623 268 127 53 chr13 20429117 20429662 -99315236 - L1MC4 LINE L1 -1 8041 7457 2368 85 7 0 chr13 20430445 20430752 -99314146 - AluY SINE Alu -2 309 1 403 234 82 68 chr13 20430807 20431236 -99313662 + MER52A LTR ERV1 1 572 -706 1771 135 4 29 chr13 20431400 20431681 -99313217 - AluSx SINE Alu -38 274 1 189 0 0 0 chr13 20432959 20432980 -99311918 + (A)n Simple_repeat Simple_repeat 1 21 0 319 333 94 17 chr13 20433557 20433737 -99311161 + MIR SINE MIR 4 197 -65 306 73 0 0 chr13 20433775 20433816 -99311082 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2010 94 72 0 chr13 20433819 20434084 -99310814 - AluSx SINE Alu -28 284 1 22 0 0 0 chr13 20434084 20434106 -99310792 + AT_rich Low_complexity Low_complexity 1 22 0 295 117 11 43 chr13 20434316 20434410 -99310488 + (TA)n Simple_repeat Simple_repeat 2 92 0 612 285 21 0 chr13 20435484 20435719 -99309179 - L1MDa LINE L1 -2971 3569 3330 10445 215 58 20 chr13 20435820 20438607 -99306291 - L1MDa LINE L1 -3630 2910 17 341 278 46 0 chr13 20438812 20438920 -99305978 - MIR SINE MIR -71 191 79 1252 264 71 23 chr13 20439145 20439584 -99305314 + LTR40c LTR ERVL 1 460 -5 291 28 0 0 chr13 20439936 20439972 -99304926 + (T)n Simple_repeat Simple_repeat 1 36 0 200 122 0 24 chr13 20440760 20440801 -99304097 + (TG)n Simple_repeat Simple_repeat 1 40 0 2331 90 0 13 chr13 20441869 20442179 -99302719 + AluY SINE Alu 1 306 -5 23 0 0 0 chr13 20442844 20442867 -99302031 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 20443247 20443270 -99301628 + (TA)n Simple_repeat Simple_repeat 1 23 0 191 245 0 41 chr13 20443876 20443925 -99300973 - L2 LINE L2 -16 3256 3210 292 250 0 0 chr13 20445090 20445150 -99299748 - L2 LINE L2 0 3313 3254 30 0 0 0 chr13 20445249 20445279 -99299619 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr13 20445398 20445448 -99299450 + AT_rich Low_complexity Low_complexity 1 50 0 728 209 0 7 chr13 20445557 20445710 -99299188 - MLT1A1 LTR MaLR -213 152 1 584 296 21 34 chr13 20445869 20446102 -99298796 + MLT1J1 LTR MaLR 206 435 -11 1235 255 77 17 chr13 20446364 20446619 -99298279 - MLT1C LTR MaLR 0 467 178 378 0 0 0 chr13 20446619 20446661 -99298237 + (TG)n Simple_repeat Simple_repeat 2 43 0 1235 255 77 17 chr13 20446661 20446809 -99298089 - MLT1C LTR MaLR -289 178 40 238 203 0 17 chr13 20447421 20447480 -99297418 + MLT1J2 LTR MaLR 369 426 -24 289 285 115 33 chr13 20447512 20447624 -99297274 - L1ME LINE L1 -336 5785 5684 1786 104 4 4 chr13 20447624 20447864 -99297034 - AluSg/x SINE Alu 0 312 73 * 2346 74 0 17 chr13 20447862 20448161 -99296737 - AluY SINE Alu -17 294 1 289 285 115 33 chr13 20448161 20448319 -99296579 - L1ME LINE L1 -734 5387 5494 642 335 97 36 chr13 20448380 20448989 -99295909 + L2 LINE L2 1784 2429 -885 1134 260 142 21 chr13 20449054 20449520 -99295378 + MLT1E LTR MaLR 72 593 0 2139 118 3 22 chr13 20451015 20451329 -99293569 - AluSx SINE Alu -4 308 1 647 233 39 24 chr13 20451472 20451678 -99293220 + MER3 DNA MER1_type 1 209 0 181 229 0 0 chr13 20451785 20451820 -99293078 - L2 LINE L2 -20 3293 3259 390 74 0 0 chr13 20453374 20453428 -99291470 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 646 209 43 6 chr13 20454898 20455061 -99289837 + MER5A DNA MER1_type 3 171 -18 321 343 70 29 chr13 20455057 20455229 -99289669 + MIR SINE MIR 63 241 -21 * 297 258 258 0 chr13 20455809 20455898 -99289000 + MER5A DNA MER1_type 49 160 -29 207 291 70 57 chr13 20456768 20456926 -99287972 + MIR SINE MIR 93 252 -10 798 215 97 45 chr13 20458780 20459068 -99285830 + L1MDb LINE L1 43 345 -6064 304 327 60 33 chr13 20459331 20459750 -99285148 + L1M4 LINE L1 3786 4215 -1931 272 248 88 9 chr13 20459944 20459957 -99284941 - L1M4 LINE L1 -1302 4844 4833 2398 84 3 0 chr13 20459957 20460255 -99284643 - AluY SINE Alu -12 299 1 272 248 88 9 chr13 20460255 20460354 -99284544 - L1M4 LINE L1 -1313 4833 4723 23 33 0 0 chr13 20460724 20460754 -99284144 + AT_rich Low_complexity Low_complexity 1 30 0 535 183 148 0 chr13 20461239 20461354 -99283544 - FLAM_A SINE Alu -1 132 1 2314 202 127 33 chr13 20461503 20462346 -99282552 - MER69 DNA AcHobo -49 2477 1556 462 307 76 71 chr13 20462347 20462662 -99282236 + L2 LINE L2 2687 3010 -303 1372 191 25 86 chr13 20462662 20462986 -99281912 - AluJo SINE Alu -8 304 1 462 307 76 71 chr13 20462986 20463250 -99281648 + L2 LINE L2 3010 3271 -42 278 293 35 9 chr13 20463345 20463461 -99281437 - MER103 DNA DNA -45 121 3 549 350 120 19 chr13 20463641 20464067 -99280831 - L2 LINE L2 0 3272 2804 23 33 0 0 chr13 20465196 20465226 -99279672 + AT_rich Low_complexity Low_complexity 1 30 0 476 150 20 30 chr13 20465235 20465335 -99279563 - L1MA5 LINE L1 -2 6298 6200 231 356 58 19 chr13 20466184 20466211 -99278687 + L2 LINE L2 3154 3178 -94 2390 126 22 0 chr13 20466211 20466567 -99278331 - THE1B LTR MaLR 0 364 1 231 356 58 19 chr13 20466567 20466643 -99278255 + L2 LINE L2 3178 3261 -11 942 280 59 42 chr13 20466662 20467133 -99277765 - LTR16C LTR ERVL -9 482 4 3567 243 29 28 chr13 20467239 20468361 -99276537 - L1M4 LINE L1 -1209 4937 3814 3453 189 18 49 chr13 20468361 20469052 -99275846 + L1MB5 LINE L1 5160 5821 -353 2404 78 0 13 chr13 20469052 20469361 -99275537 + AluY SINE Alu 1 305 -6 3453 189 18 49 chr13 20469361 20469657 -99275241 + L1MB5 LINE L1 5821 6125 -49 309 260 75 12 chr13 20471080 20471253 -99273645 - L1ME4a LINE L1 -98 6023 5840 21 0 0 0 chr13 20471296 20471317 -99273581 + AT_rich Low_complexity Low_complexity 1 21 0 237 240 13 0 chr13 20471497 20471572 -99273326 - L1M4 LINE L1 -3959 2187 2112 1240 153 0 0 chr13 20471707 20471910 -99272988 - L1PA13 LINE L1 -3 6160 5958 2358 169 46 26 chr13 20472179 20472677 -99272221 - L1MC1 LINE L1 -6 6327 5820 1811 152 34 9 chr13 20472685 20473008 -99271890 - L1MC1 LINE L1 -562 5771 5441 948 202 23 43 chr13 20473010 20473267 -99271631 + MSTD LTR MaLR 145 396 0 290 289 13 13 chr13 20474068 20474144 -99270754 - MIR SINE MIR -159 103 28 2440 69 0 28 chr13 20476105 20476422 -99268476 - AluY SINE Alu -3 308 1 298 243 56 56 chr13 20477985 20478092 -99266806 - L2 LINE L2 0 3313 3207 843 202 10 30 chr13 20478230 20478433 -99266465 - MER3 DNA MER1_type -9 200 2 638 280 69 13 chr13 20478771 20479003 -99265895 - L2 LINE L2 -1 3312 3068 1412 259 120 30 chr13 20479003 20479551 -99265347 - L1MEc LINE L1 -3706 2509 2012 1801 103 118 8 chr13 20479551 20479813 -99265085 - AluSg1 SINE Alu -18 291 1 1412 259 120 30 chr13 20479813 20480365 -99264533 - L1MEc LINE L1 -4203 2012 1511 2583 123 5 0 chr13 20480365 20480738 -99264160 - THE1C LTR MaLR 0 375 1 10221 115 45 3 chr13 20480738 20482254 -99262644 - THE1C-int LTR MaLR 0 1580 1 2631 106 3 13 chr13 20482255 20482633 -99262265 - THE1C LTR MaLR -1 374 1 1412 259 120 30 chr13 20482633 20482696 -99262202 - L1MEc LINE L1 -4703 1512 1283 1552 188 14 17 chr13 20482696 20482988 -99261910 + AluJb SINE Alu 1 291 -21 574 304 80 30 chr13 20483131 20483496 -99261402 - L2 LINE L2 -824 2490 2108 2093 249 37 22 chr13 20483661 20483738 -99261160 - L1M4 LINE L1 -1816 4828 4754 192 77 0 0 chr13 20483738 20483764 -99261134 + (TG)n Simple_repeat Simple_repeat 2 27 0 2093 249 37 22 chr13 20483764 20484440 -99260458 - L1M4 LINE L1 -1890 4754 4064 1144 204 84 62 chr13 20484440 20484843 -99260055 - MLT1C LTR MaLR 0 467 56 519 273 32 16 chr13 20484886 20485135 -99259763 - L1M4 LINE L1 -2575 4069 3817 * 6242 70 6 30 chr13 20485105 20486017 -99258881 - L1PA7 LINE L1 -3 6649 5760 648 239 44 0 chr13 20486011 20486191 -99258707 - L1M4 LINE L1 -6353 189 2 * 283 370 0 16 chr13 20486758 20486885 -99258013 - MIR3 SINE MIR -6 202 78 290 230 103 23 chr13 20487208 20487295 -99257603 - L2 LINE L2 -10 3262 3169 188 214 71 0 chr13 20487783 20487825 -99257073 - L2 LINE L2 -2 3311 3267 1255 202 77 36 chr13 20489273 20489664 -99255234 + MLT1C LTR MaLR 60 466 -1 477 260 3 39 chr13 20490610 20490940 -99253958 + CT-rich Low_complexity Low_complexity 1 318 0 7027 54 22 0 chr13 20491056 20491986 -99252912 - L1PA7 LINE L1 -4 6150 5215 12493 130 8 27 chr13 20491986 20495059 -99249839 - L1P3 LINE L1 -3393 3068 12 21 36 0 0 chr13 20495060 20495088 -99249810 + AT_rich Low_complexity Low_complexity 1 28 0 515 100 11 11 chr13 20496934 20497024 -99247874 - L1MB8 LINE L1 0 6178 6089 3356 175 45 7 chr13 20497039 20497748 -99247150 - L1MB4 LINE L1 -6 6174 5439 217 237 129 21 chr13 20497964 20498057 -99246841 + MIR SINE MIR 150 252 -10 2368 72 7 3 chr13 20499942 20500234 -99244664 + AluSq SINE Alu 1 293 -20 1216 126 37 0 chr13 20500287 20500477 -99244421 + MER30 DNA MER1_type 1 197 -33 914 231 114 70 chr13 20502574 20503003 -99241895 + LTR37B LTR ERV1 21 468 0 38 39 0 0 chr13 20503304 20503356 -99241542 + AT_rich Low_complexity Low_complexity 1 52 0 238 329 14 0 chr13 20503503 20503576 -99241322 - L2 LINE L2 -206 3066 2993 320 161 81 0 chr13 20504764 20504778 -99240120 - MER46A DNA MER2_type -73 163 145 13965 142 19 107 chr13 20504778 20507113 -99237785 + Tigger4(Zombi) DNA MER2_type 1 2016 -715 2538 20 20 0 chr13 20507113 20507414 -99237484 + L1PA2 LINE L1 5846 6155 0 13965 142 19 107 chr13 20507414 20508072 -99236826 + Tigger4(Zombi) DNA MER2_type 2016 2730 -1 755 163 7 7 chr13 20508230 20508365 -99236533 + Tigger4(Zombi) DNA MER2_type 1803 1937 -794 333 321 52 33 chr13 20508401 20508613 -99236285 + L1MEc LINE L1 1304 1519 -4877 335 219 30 116 chr13 20508910 20509074 -99235824 + L1MEc LINE L1 2217 2366 -3849 405 204 176 19 chr13 20509112 20509220 -99235678 - L2 LINE L2 -2 3311 3187 403 319 95 51 chr13 20509393 20509782 -99235116 - LTR33 LTR ERVL -11 510 105 316 285 68 82 chr13 20509854 20510135 -99234763 + L1MEc LINE L1 3062 3338 -2877 692 347 34 9 chr13 20510405 20510728 -99234170 + MLT1J LTR MaLR 71 401 -110 1867 121 0 4 chr13 20511242 20511498 -99233400 + AluSx SINE Alu 35 289 -23 499 313 72 24 chr13 20511650 20511985 -99232913 + L1MEc LINE L1 118 468 -5928 * 1725 268 44 40 chr13 20511970 20512968 -99231930 + L1MEc LINE L1 2545 3546 -2669 862 237 68 22 chr13 20512973 20513251 -99231647 - L1MB8 LINE L1 0 6178 5888 2653 201 22 30 chr13 20513254 20514170 -99230728 - L1MB8 LINE L1 -428 5756 4854 2018 107 0 58 chr13 20514170 20514480 -99230418 + AluSx SINE Alu 1 292 -20 2653 201 22 30 chr13 20514480 20514673 -99230225 - L1MB8 LINE L1 -1330 4854 4661 4353 195 70 6 chr13 20514673 20515515 -99229383 - MER54A LTR ERVL -5 896 1 336 152 45 125 chr13 20515521 20515633 -99229265 - L1MB8 LINE L1 -1482 4664 4562 2053 149 97 20 chr13 20515635 20516025 -99228873 + MSTA LTR MaLR 9 428 0 8240 188 43 24 chr13 20516025 20516494 -99228404 + MSTA-int LTR MaLR 1 460 -1191 2789 22 0 0 chr13 20516494 20516805 -99228093 + AluYa5 SINE Alu 1 311 0 8240 188 43 24 chr13 20516805 20517956 -99226942 + MSTA-int LTR MaLR 460 1651 0 2169 134 84 22 chr13 20517956 20518359 -99226539 + MSTA LTR MaLR 1 428 0 1815 237 18 27 chr13 20518359 20518908 -99225990 - L1MB8 LINE L1 -1582 4564 4021 213 39 0 0 chr13 20518913 20518939 -99225959 + (TG)n Simple_repeat Simple_repeat 2 27 0 10300 159 9 3 chr13 20518974 20520971 -99223927 + L1P4 LINE L1 3511 5515 -653 883 214 0 6 chr13 20520982 20521155 -99223743 - AluJb SINE Alu -25 287 116 1497 196 58 58 chr13 20521155 20521583 -99223315 + L1ME1 LINE L1 5510 6079 -255 2799 19 0 0 chr13 20521583 20521893 -99223005 + AluYa5 SINE Alu 1 310 -1 1497 196 58 58 chr13 20521893 20522140 -99222758 + L1ME1 LINE L1 6079 6325 -9 1356 229 38 24 chr13 20522144 20522484 -99222414 + MLT1A1 LTR MaLR 3 347 -18 522 271 21 0 chr13 20522558 20522746 -99222152 + L1ME1 LINE L1 2189 2380 -3766 1037 184 68 138 chr13 20522746 20523143 -99221755 - LOR1a LTR ERV1 -13 484 116 2035 284 65 12 chr13 20523174 20524229 -99220669 + L1ME1 LINE L1 2375 3485 -2661 43168 48 5 0 chr13 20524244 20530369 -99214529 + L1PA4 LINE L1 4 6155 0 3279 260 115 24 chr13 20530384 20530642 -99214256 + L1ME1 LINE L1 3497 3730 -2436 2200 79 4 0 chr13 20530642 20530920 -99213978 + AluY SINE Alu 19 297 -14 3279 260 115 24 chr13 20530920 20533093 -99211805 + L1ME1 LINE L1 3730 6131 -35 2154 75 11 4 chr13 20533562 20533872 -99211026 + AluY SINE Alu 1 312 0 23 0 0 0 chr13 20534732 20534755 -99210143 + AT_rich Low_complexity Low_complexity 1 23 0 1441 149 52 45 chr13 20534883 20535192 -99209706 - L1MA9 LINE L1 -5 6307 5997 28 0 0 0 chr13 20535696 20535724 -99209174 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 20536381 20536409 -99208489 + AT_rich Low_complexity Low_complexity 1 28 0 2411 65 3 0 chr13 20536409 20536701 -99208197 + AluSp SINE Alu 1 293 -20 8184 169 24 51 chr13 20536704 20539244 -99205654 - L1MA4 LINE L1 -8 6292 3827 5936 23 0 0 chr13 20539244 20539931 -99204967 - L1PA2 LINE L1 -2 6153 5467 8184 169 24 51 chr13 20539931 20540204 -99204694 - L1MA4 LINE L1 -2473 3827 3548 10241 181 16 2 chr13 20540214 20542933 -99201965 + L1PA13 LINE L1 3428 6163 0 5365 166 45 16 chr13 20542933 20543442 -99201456 + L1MA5 LINE L1 4325 4818 -1482 1119 169 29 14 chr13 20543442 20543649 -99201249 - MER6B DNA MER2_type 0 210 1 5365 166 45 16 chr13 20543649 20545058 -99199840 + L1MA5 LINE L1 4818 6299 -1 25 31 0 0 chr13 20545213 20545245 -99199653 + AT_rich Low_complexity Low_complexity 1 32 0 228 35 0 0 chr13 20546052 20546081 -99198817 + (TG)n Simple_repeat Simple_repeat 2 30 0 231 88 0 0 chr13 20546946 20546980 -99197918 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4146 129 9 5 chr13 20547169 20547819 -99197079 - MER39B LTR ERV1 0 653 1 1015 211 106 116 chr13 20547893 20548489 -99196409 + LTR49 LTR ERV1 5 594 -1 2044 161 36 28 chr13 20549370 20549730 -99195168 - THE1B LTR MaLR -1 363 1 11175 107 14 0 chr13 20549730 20551289 -99193609 - THE1B-int LTR MaLR 0 1580 1 2177 138 33 25 chr13 20551289 20551650 -99193248 - THE1B LTR MaLR 0 364 1 32 0 0 0 chr13 20551715 20551747 -99193151 + AT_rich Low_complexity Low_complexity 1 32 0 733 204 41 0 chr13 20552220 20552367 -99192531 + MLT1J2 LTR MaLR 16 168 -282 492 251 32 70 chr13 20552406 20552593 -99192305 + MLT1J2 LTR MaLR 245 424 -26 24 53 0 0 chr13 20553959 20553997 -99190901 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 20554639 20554660 -99190238 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr13 20555024 20555070 -99189828 + (TG)n Simple_repeat Simple_repeat 2 47 0 309 290 74 79 chr13 20556128 20556507 -99188391 + L1MDa LINE L1 1039 1415 -5125 1608 299 176 18 chr13 20556519 20557291 -99187607 + L1M4b LINE L1 374 1267 -5592 1544 190 83 21 chr13 20557299 20557672 -99187226 + MSTD LTR MaLR 1 396 0 312 27 0 0 chr13 20557908 20557945 -99186953 + (TTA)n Simple_repeat Simple_repeat 3 39 0 14588 32 1 1 chr13 20557945 20560442 -99184456 - L1PA4 LINE L1 -18 6137 3636 2274 77 7 0 chr13 20562481 20562768 -99182130 + AluSp SINE Alu 14 302 -11 2650 42 0 0 chr13 20563086 20563392 -99181506 - AluY SINE Alu -5 306 1 232 259 19 0 chr13 20563435 20563543 -99181355 + (TA)n Simple_repeat Simple_repeat 1 110 0 262 336 118 50 chr13 20563775 20564132 -99180766 - L2 LINE L2 -12 3301 2921 582 254 57 89 chr13 20564873 20565366 -99179532 + MLT1H LTR MaLR 39 595 0 425 131 12 0 chr13 20566031 20566115 -99178783 + CT-rich Low_complexity Low_complexity 2 86 0 584 347 98 23 chr13 20566155 20566593 -99178305 + L3 LINE CR1 916 1386 -191 21 0 0 0 chr13 20567231 20567252 -99177646 + AT_rich Low_complexity Low_complexity 1 21 0 585 287 35 17 chr13 20569251 20569425 -99175473 + MIR SINE MIR 36 212 -50 491 266 167 27 chr13 20569998 20570220 -99174678 + MIR SINE MIR 10 262 0 258 268 0 0 chr13 20570429 20570541 -99174357 + (TA)n Simple_repeat Simple_repeat 2 113 0 241 318 0 0 chr13 20571351 20571414 -99173484 - L3b LINE CR1 -139 1444 1382 2351 92 6 13 chr13 20571839 20572154 -99172744 + AluSp SINE Alu 1 313 0 709 279 107 38 chr13 20572250 20572902 -99171996 + L1ME4a LINE L1 5278 5974 -147 280 290 6 0 chr13 20573590 20573675 -99171223 - MIR3 SINE MIR -22 186 100 189 255 0 39 chr13 20573760 20573811 -99171087 - L3 LINE CR1 -603 974 926 601 347 73 29 chr13 20574804 20575282 -99169616 + L2 LINE L2 2808 3306 -7 1337 189 184 19 chr13 20576077 20576500 -99168398 + LTR54B LTR ERV1 2 494 -4 23 54 0 0 chr13 20576620 20576657 -99168241 + AT_rich Low_complexity Low_complexity 1 37 0 306 330 78 35 chr13 20577133 20577415 -99167483 - L1ME LINE L1 -502 6117 5824 244 258 48 0 chr13 20577613 20577675 -99167223 - MIR SINE MIR -67 141 77 222 200 0 0 chr13 20578899 20578939 -99165959 + CT-rich Low_complexity Low_complexity 2 41 0 587 226 43 24 chr13 20579094 20579258 -99165640 - MER96B DNA MER1_type? -238 179 13 2622 36 0 0 chr13 20580298 20580599 -99164299 - AluY SINE Alu -10 301 1 240 216 284 11 chr13 20582514 20582602 -99162296 + L2 LINE L2 3199 3310 -3 23 0 0 0 chr13 20582621 20582644 -99162254 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 78 35 chr13 20584951 20585067 -99159831 - MIR SINE MIR -70 138 18 290 136 0 0 chr13 20586866 20586910 -99157988 + L1PBa LINE L1 2443 2486 -4377 705 146 88 0 chr13 20586910 20587047 -99157851 + L1PBa LINE L1 2444 2592 -4271 1221 213 28 19 chr13 20587113 20587474 -99157424 + L1PB3 LINE L1 5040 5403 -743 3471 142 30 5 chr13 20587483 20588073 -99156825 + L1PB3 LINE L1 5543 6147 -7 35 54 0 0 chr13 20588369 20588425 -99156473 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr13 20588465 20588497 -99156401 + AT_rich Low_complexity Low_complexity 1 32 0 764 365 90 9 chr13 20588688 20589234 -99155664 + L2 LINE L2 1763 2352 -962 437 240 48 32 chr13 20589441 20589566 -99155332 - L2 LINE L2 0 3313 3187 504 238 0 10 chr13 20589638 20589739 -99155159 - AluJb SINE Alu -17 295 196 635 240 0 7 chr13 20589758 20589908 -99154990 - L1ME LINE L1 -1160 5484 5336 3689 236 86 42 chr13 20589917 20591635 -99153263 - L1ME LINE L1 -3850 2794 1001 815 263 48 12 chr13 20591851 20592102 -99152796 - L1ME LINE L1 -6281 261 2 1664 219 51 22 chr13 20592111 20592618 -99152280 - L1M4 LINE L1 -1314 4832 4311 403 325 70 37 chr13 20592625 20592896 -99152002 + L2 LINE L2 2698 2977 -337 2624 226 42 8 chr13 20592909 20593501 -99151397 + L1MC1 LINE L1 4 615 -5811 290 275 14 0 chr13 20593504 20593573 -99151325 + L1MC1 LINE L1 573 642 -5784 6951 240 49 7 chr13 20593574 20595681 -99149217 + L1MC1 LINE L1 3147 5342 -1084 6179 133 39 18 chr13 20595693 20596766 -99148132 + L1MC1 LINE L1 5518 6612 -1 30 45 0 0 chr13 20596981 20597025 -99147873 + AT_rich Low_complexity Low_complexity 1 44 0 331 138 0 94 chr13 20597026 20597207 -99147691 + (TAA)n Simple_repeat Simple_repeat 3 166 0 323 278 11 0 chr13 20597207 20597297 -99147601 - L1MC4 LINE L1 -1338 6704 6614 271 271 0 0 chr13 20597298 20597383 -99147515 + (TA)n Simple_repeat Simple_repeat 1 85 0 260 347 68 16 chr13 20597531 20597721 -99147177 - MIR SINE MIR -61 201 2 391 370 74 31 chr13 20597832 20598346 -99146552 - L2 LINE L2 -2606 708 173 2105 118 7 0 chr13 20598586 20598873 -99146025 + AluSx SINE Alu 1 289 -23 245 377 85 41 chr13 20601168 20601723 -99143175 + L2 LINE L2 212 790 -2524 798 276 5 5 chr13 20602363 20602548 -99142350 - MIR SINE MIR -20 242 58 865 249 13 27 chr13 20602912 20603137 -99141761 + MIR SINE MIR 41 262 0 206 279 0 0 chr13 20603164 20603207 -99141691 + L3 LINE CR1 731 773 -804 209 343 168 22 chr13 20605698 20605835 -99139063 - L2 LINE L2 -605 2709 2553 6171 87 14 2 chr13 20607435 20608279 -99136619 - L1PA10 LINE L1 -11 6157 5304 186 259 190 9 chr13 20608474 20608590 -99136308 - L2 LINE L2 -100 3213 3077 21 36 0 0 chr13 20609486 20609514 -99135384 + AT_rich Low_complexity Low_complexity 1 28 0 215 245 0 0 chr13 20610051 20610104 -99134794 + T-rich Low_complexity Low_complexity 1 53 0 927 150 40 111 chr13 20610148 20610374 -99134524 - MLT1B LTR MaLR 0 390 181 392 182 0 26 chr13 20610378 20610455 -99134443 - MLT1B LTR MaLR -315 75 1 1199 204 65 46 chr13 20610860 20611256 -99133642 + MER57A LTR ERV1 19 403 0 26 0 0 0 chr13 20611269 20611295 -99133603 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr13 20611330 20611379 -99133519 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 20612205 20612227 -99132671 + AT_rich Low_complexity Low_complexity 1 22 0 248 188 31 47 chr13 20613142 20613206 -99131692 + L1MEc LINE L1 1924 1986 -4410 301 278 87 87 chr13 20613315 20613567 -99131331 + L1MEc LINE L1 2120 2371 -4025 709 271 92 0 chr13 20613810 20614039 -99130859 + MER46C DNA MER2_type 10 259 -79 618 78 29 0 chr13 20614157 20614259 -99130639 + (GA)n Simple_repeat Simple_repeat 2 106 0 230 285 89 16 chr13 20614393 20614516 -99130382 + L1MEc LINE L1 2713 2844 -3371 829 20 20 0 chr13 20614521 20614622 -99130276 + L1PA4 LINE L1 6052 6154 -1 2341 52 3 14 chr13 20615048 20615337 -99129561 - AluY SINE Alu -11 300 15 212 119 0 24 chr13 20616129 20616171 -99128727 + (GA)n Simple_repeat Simple_repeat 2 42 0 302 237 185 52 chr13 20616576 20616711 -99128187 + MIR SINE MIR 36 188 -74 2394 82 0 3 chr13 20616761 20617065 -99127833 - AluSp SINE Alu -10 303 1 22 0 0 0 chr13 20617166 20617188 -99127710 + AT_rich Low_complexity Low_complexity 1 22 0 773 144 44 62 chr13 20617188 20617348 -99127550 - MER4D LTR ERV1 -25 878 722 * 1332 87 61 6 chr13 20617323 20617565 -99127333 - MER4D LTR ERV1 -311 592 296 274 303 13 0 chr13 20617741 20617817 -99127081 - MLT1I LTR MaLR -248 161 85 219 269 155 87 chr13 20618192 20618229 -99126669 + MIR SINE MIR 29 62 -200 1732 146 62 4 chr13 20618229 20618504 -99126394 - AluJb SINE Alu -20 292 2 219 269 155 87 chr13 20618504 20618685 -99126213 + MIR SINE MIR 62 262 0 271 241 51 0 chr13 20618905 20618984 -99125914 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1446 263 78 36 chr13 20619733 20620365 -99124533 - L1ME3A LINE L1 -55 6509 5852 * 2916 273 108 51 chr13 20620357 20621522 -99123376 - L1MDa LINE L1 -1423 5117 4020 2377 132 26 33 chr13 20621522 20621586 -99123312 - L1MA9 LINE L1 0 6312 6249 2444 60 0 25 chr13 20621586 20621905 -99122993 - AluY SINE Alu 0 311 1 2377 132 26 33 chr13 20621905 20622295 -99122603 - L1MA9 LINE L1 -63 6249 5861 2916 273 108 51 chr13 20622295 20622669 -99122229 - L1MDa LINE L1 -2520 4020 3669 2293 97 0 0 chr13 20622669 20622967 -99121931 - AluSx SINE Alu -14 298 1 2916 273 108 51 chr13 20622967 20625024 -99119874 - L1MDa LINE L1 -2871 3669 1297 547 122 0 0 chr13 20625639 20625721 -99119177 + L1MC1 LINE L1 6247 6328 -5 1377 53 72 91 chr13 20626561 20626770 -99118128 + AluSg SINE Alu 1 205 -105 1856 80 0 28 chr13 20626771 20627041 -99117857 + AluY SINE Alu 42 304 0 3137 183 51 37 chr13 20627119 20627868 -99117030 + L1MC3 LINE L1 6935 7693 -92 236 203 17 0 chr13 20628009 20628068 -99116830 - L1MC3 LINE L1 -151 7634 7575 292 181 24 48 chr13 20628069 20628152 -99116746 + L1MC3 LINE L1 7705 7785 0 21 0 0 0 chr13 20628311 20628332 -99116566 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 20628669 20628697 -99116201 + AT_rich Low_complexity Low_complexity 1 28 0 212 343 0 14 chr13 20630815 20630888 -99114010 - L2 LINE L2 0 3313 3242 4730 206 27 39 chr13 20631305 20632463 -99112435 + L1MC3 LINE L1 6641 7784 -1 342 0 0 0 chr13 20634173 20634211 -99110687 + (TG)n Simple_repeat Simple_repeat 2 39 0 3429 188 160 12 chr13 20635138 20635915 -99108983 - THE1C-int LTR MaLR -757 894 3 1678 140 50 20 chr13 20635917 20636217 -99108681 - THE1C LTR MaLR 0 375 67 687 172 9 0 chr13 20636745 20636861 -99108037 + MLT1A1 LTR MaLR 249 365 0 224 320 8 57 chr13 20638736 20638858 -99106040 + L2 LINE L2 3155 3270 -43 23 0 0 0 chr13 20638866 20638889 -99106009 + AT_rich Low_complexity Low_complexity 1 23 0 738 171 0 0 chr13 20638892 20639021 -99105877 - L1MA5 LINE L1 -3 6297 6169 248 333 0 0 chr13 20639182 20639254 -99105644 + (TCCA)n Simple_repeat Simple_repeat 2 73 0 276 100 0 0 chr13 20640188 20640228 -99104670 + (TG)n Simple_repeat Simple_repeat 1 40 0 430 274 51 57 chr13 20640246 20640421 -99104477 + L3 LINE CR1 923 1096 -481 284 384 18 0 chr13 20640427 20640539 -99104359 + L3 LINE CR1 1461 1574 -3 296 334 26 0 chr13 20640576 20640690 -99104208 - MIR SINE MIR -64 144 19 187 346 141 5 chr13 20640690 20640875 -99104023 + L3 LINE CR1 1098 1307 -270 236 275 119 0 chr13 20641022 20641131 -99103767 + MLT1J LTR MaLR 32 153 -358 346 277 42 50 chr13 20641449 20641709 -99103189 + HAL1 LINE L1 2246 2503 -4 1908 94 12 101 chr13 20643118 20643446 -99101452 - AluSq SINE Alu -14 299 1 25 0 0 0 chr13 20643448 20643473 -99101425 + AT_rich Low_complexity Low_complexity 1 25 0 231 292 45 0 chr13 20844734 20844823 -98900075 + MER112 DNA MER1_type 19 111 -149 291 140 0 0 chr13 20844832 20844882 -98900016 + (T)n Simple_repeat Simple_repeat 1 50 0 1652 94 8 0 chr13 20845546 20845780 -98899118 - L1PA11 LINE L1 0 6174 5939 530 213 7 7 chr13 20845917 20846053 -98898845 + MER3 DNA MER1_type 34 122 -87 1216 206 90 27 chr13 20846061 20846311 -98898587 + MER3 DNA MER1_type 2234 2516 -108 2265 120 0 18 chr13 20846311 20846652 -98898246 - MER1B DNA MER1_type 0 337 3 1216 206 90 27 chr13 20846652 20846769 -98898129 + MER3 DNA MER1_type 2516 2624 0 394 281 61 0 chr13 20846905 20847048 -98897850 - MIR SINE MIR -67 141 8 296 269 21 21 chr13 20847326 20847419 -98897479 - MIR SINE MIR 0 262 170 202 214 60 60 chr13 20847510 20847594 -98897304 - MIR SINE MIR -102 106 23 544 232 8 24 chr13 20848471 20848596 -98896302 + MIR SINE MIR 32 154 -108 181 352 45 50 chr13 20848842 20849021 -98895877 + L2 LINE L2 2576 2753 -561 4468 236 34 38 chr13 20849138 20849917 -98894981 + L1MC1 LINE L1 3193 3965 -2181 1222 222 12 102 chr13 20849917 20850318 -98894580 + MLT1A1 LTR MaLR 1 365 0 4468 236 34 38 chr13 20850318 20850950 -98893948 + L1MC1 LINE L1 3965 4598 -1548 1514 78 4 91 chr13 20851050 20851292 -98893606 - MLT2A2 LTR ERVL -232 221 1 2111 207 56 14 chr13 20851297 20851742 -98893156 - MER88 LTR ERVL 0 464 1 5341 181 43 38 chr13 20851742 20852936 -98891962 + L1MC1 LINE L1 4651 5840 -493 2009 95 57 3 chr13 20852936 20853219 -98891679 + AluSq SINE Alu 1 298 -15 5341 181 43 38 chr13 20853219 20853715 -98891183 + L1MC1 LINE L1 5840 6332 -1 366 309 98 66 chr13 20853747 20854216 -98890682 + L1ME4a LINE L1 2506 2989 -3157 25 0 0 0 chr13 20854229 20854254 -98890644 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 20854616 20854645 -98890253 + AT_rich Low_complexity Low_complexity 1 29 0 327 303 20 7 chr13 20854870 20855056 -98889842 + L1ME4a LINE L1 5282 5468 -723 302 308 121 57 chr13 20855073 20855512 -98889386 + L1ME4a LINE L1 5491 5957 -164 23 0 0 0 chr13 20855535 20855558 -98889340 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 20855662 20855689 -98889209 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr13 20855831 20855861 -98889037 + AT_rich Low_complexity Low_complexity 1 30 0 591 280 0 36 chr13 20855900 20856068 -98888830 - MIR SINE MIR 0 262 101 2324 61 3 26 chr13 20856165 20856478 -98888420 + AluY SINE Alu 1 306 -5 2020 40 24 12 chr13 20856478 20856727 -98888171 + AluY SINE Alu 50 302 -9 2559 51 3 3 chr13 20856737 20857048 -98887850 + AluY SINE Alu 1 311 0 2487 213 114 20 chr13 20857612 20858373 -98886525 - L1ME2 LINE L1 -15 6149 5317 739 234 43 59 chr13 20858355 20858727 -98886171 - L1ME2 LINE L1 -1698 4448 4083 * 288 238 60 12 chr13 20858760 20858844 -98886054 - MLT1C LTR MaLR -379 88 1 633 173 30 23 chr13 20858844 20858977 -98885921 - MLT1C-int LTR MaLR 0 1371 1238 245 172 35 52 chr13 20858985 20859043 -98885855 - MLT1C-int LTR MaLR -110 1625 1569 3320 255 67 36 chr13 20859201 20860345 -98884553 - MLT1C-int LTR MaLR -152 1219 40 435 202 0 0 chr13 20860875 20860969 -98883929 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 384 280 251 6 chr13 20863499 20863674 -98881224 + MIR SINE MIR 34 251 -11 207 0 0 0 chr13 20863908 20863931 -98880967 + (TG)n Simple_repeat Simple_repeat 2 24 0 856 217 73 42 chr13 20864759 20865045 -98879853 + L1MA9 LINE L1 5889 6183 -108 2273 144 5 52 chr13 20866803 20867207 -98877691 + MLT1B LTR MaLR 1 385 -5 3494 129 79 66 chr13 20867908 20868676 -98876222 + LTR1 LTR ERV1 8 785 0 517 202 16 47 chr13 20868676 20868805 -98876093 + HUERS-P2 LTR ERV1 1 125 -2963 653 47 0 0 chr13 20868824 20868910 -98875988 + AluY SINE Alu 216 301 -10 223 315 92 23 chr13 20869984 20870114 -98874784 + MIR SINE MIR 14 152 -110 625 295 211 21 chr13 20870147 20870622 -98874276 + MER45C DNA AcHobo 38 602 -351 536 211 108 108 chr13 20870672 20870910 -98873988 + MER45C DNA AcHobo 719 953 0 183 309 0 0 chr13 20871009 20871051 -98873847 + L2 LINE L2 3142 3183 -89 22 0 0 0 chr13 20871493 20871515 -98873383 + AT_rich Low_complexity Low_complexity 1 22 0 2112 240 118 16 chr13 20872711 20873468 -98871430 - L1MC4a LINE L1 0 7808 6975 291 267 92 17 chr13 20873756 20873876 -98871022 - MIR SINE MIR -86 176 48 280 299 17 8 chr13 20875118 20875235 -98869663 + (TA)n Simple_repeat Simple_repeat 2 119 0 276 124 52 10 chr13 20875258 20875355 -98869543 + (TA)n Simple_repeat Simple_repeat 2 102 0 27 0 0 0 chr13 20875367 20875394 -98869504 + AT_rich Low_complexity Low_complexity 1 27 0 27482 94 9 12 chr13 20876296 20881271 -98863627 + L1PA7 LINE L1 1196 6152 -2 208 338 25 0 chr13 20881715 20881795 -98863103 + MIR SINE MIR 81 162 -100 1348 202 125 38 chr13 20882420 20882863 -98862035 - MER66A LTR ERV1 0 601 100 318 341 34 52 chr13 20883016 20883283 -98861615 - L2 LINE L2 -19 3294 3033 492 268 258 5 chr13 20883412 20883621 -98861277 - MIR SINE MIR 0 262 1 2275 95 33 10 chr13 20883961 20884266 -98860632 + AluSx SINE Alu 1 312 0 812 273 23 23 chr13 20884311 20884619 -98860279 - HAL1 LINE L1 -137 2370 2063 327 149 0 0 chr13 20886084 20886158 -98858740 + (TA)n Simple_repeat Simple_repeat 2 75 0 24 53 0 0 chr13 20886580 20886618 -98858280 + AT_rich Low_complexity Low_complexity 1 38 0 376 218 40 10 chr13 20886757 20886849 -98858049 + L1MA9 LINE L1 6125 6222 -90 471 63 0 0 chr13 20886849 20886912 -98857986 + (TA)n Simple_repeat Simple_repeat 2 64 0 216 274 0 0 chr13 20887108 20887159 -98857739 + (TATG)n Simple_repeat Simple_repeat 1 51 0 850 210 19 39 chr13 20887467 20887724 -98857174 + MER96B DNA MER1_type? 164 415 -2 3669 243 68 24 chr13 20888095 20889939 -98854959 + L1MCb LINE L1 3 2124 -4440 2734 239 51 40 chr13 20889972 20890227 -98854671 + L1MCb LINE L1 2205 2456 -4108 2200 116 0 3 chr13 20890227 20890530 -98854368 + AluSq SINE Alu 1 302 -11 2734 239 51 40 chr13 20890530 20891490 -98853408 + L1MCb LINE L1 2456 3429 -3135 574 128 77 0 chr13 20891490 20891607 -98853291 + L1MA9 LINE L1 6177 6302 -10 2734 239 51 40 chr13 20891607 20891747 -98853151 + L1MCb LINE L1 3429 3566 -2998 969 243 18 74 chr13 20891763 20892071 -98852827 + L1MCb LINE L1 4644 4968 -1596 2488 56 0 3 chr13 20892071 20892373 -98852525 + AluY SINE Alu 1 301 -10 969 243 18 74 chr13 20892373 20892684 -98852214 + L1MCb LINE L1 4968 5332 -1232 2202 58 10 48 chr13 20893227 20893538 -98851360 - AluY SINE Alu -12 299 1 233 204 0 0 chr13 20894415 20894464 -98850434 + L1MB4 LINE L1 6126 6174 -6 297 231 56 37 chr13 20894593 20894701 -98850197 + MIR3 SINE MIR 99 208 0 332 385 65 7 chr13 20895063 20895338 -98849560 + Tigger8 DNA MER2_type 354 644 -22 1899 134 28 3 chr13 20895423 20895707 -98849191 + AluSx SINE Alu 1 291 -21 3773 169 29 69 chr13 20897116 20897299 -98847599 - L1MA7 LINE L1 0 6291 6102 283 71 0 24 chr13 20897299 20897335 -98847563 + AluY SINE Alu 1 36 -261 1510 74 5 0 chr13 20897335 20897525 -98847373 + AluY SINE Alu 112 302 -9 3773 169 29 69 chr13 20897530 20898177 -98846721 - L1MA7 LINE L1 -189 6102 5455 * 5590 159 22 5 chr13 20898166 20899234 -98845664 + L1 LINE L1 3783 4869 -1277 2118 43 0 0 chr13 20899646 20899900 -98844998 + L1PA3 LINE L1 5899 6152 -3 361 305 0 30 chr13 20900670 20900801 -98844097 + MIR SINE MIR 57 183 -79 328 290 28 9 chr13 20900885 20900992 -98843906 - MIR SINE MIR -46 216 108 22 21 0 62 chr13 20902445 20902466 -98842432 + AT_rich Low_complexity Low_complexity 1 22 -23 1636 162 49 18 chr13 20902466 20902750 -98842148 - AluJb SINE Alu -19 293 1 22 21 0 62 chr13 20902750 20902776 -98842122 + AT_rich Low_complexity Low_complexity 22 45 0 2229 57 18 0 chr13 20902786 20903068 -98841830 - AluY SINE Alu -24 287 1 2591 52 0 0 chr13 20903418 20903726 -98841172 + AluY SINE Alu 1 308 -3 542 281 77 73 chr13 20904822 20905096 -98839802 + MLT1J LTR MaLR 52 326 -185 235 271 0 0 chr13 20905189 20905259 -98839639 - L1MC4 LINE L1 -1324 6718 6649 28 48 0 0 chr13 20905259 20905301 -98839597 + AT_rich Low_complexity Low_complexity 1 42 0 668 318 34 0 chr13 20905529 20905765 -98839133 + MIR SINE MIR 19 262 0 234 0 0 0 chr13 20905794 20905820 -98839078 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1432 223 64 22 chr13 20906620 20907028 -98837870 + MLT1C LTR MaLR 42 466 -1 3706 256 59 34 chr13 20907029 20908218 -98836680 + MLT1C-int LTR MaLR 1 1219 -152 245 172 35 52 chr13 20908376 20908434 -98836464 + MLT1C-int LTR MaLR 1569 1625 -110 633 173 30 23 chr13 20908442 20908575 -98836323 + MLT1C-int LTR MaLR 1238 1371 0 288 238 60 12 chr13 20908575 20908659 -98836239 + MLT1C LTR MaLR 1 88 -379 739 234 43 59 chr13 20908692 20909064 -98835834 + L1ME2 LINE L1 4083 4448 -1698 * 2487 213 114 20 chr13 20909046 20909807 -98835091 + L1ME2 LINE L1 5317 6149 -15 2527 55 3 3 chr13 20910371 20910681 -98834217 - AluY SINE Alu -1 310 1 2203 45 59 10 chr13 20910691 20910979 -98833919 - AluY SINE Alu -9 302 1 292 200 27 13 chr13 20911075 20911150 -98833748 + L1M LINE L1 5322 5397 -903 2438 140 30 21 chr13 20912428 20912856 -98832042 + Tigger2a DNA MER2_type 1 432 -2 808 163 75 27 chr13 20912904 20913051 -98831847 + FRAM SINE Alu 4 157 -9 30 0 0 0 chr13 20915182 20915212 -98829686 + AT_rich Low_complexity Low_complexity 1 30 0 2522 50 0 0 chr13 20915469 20915772 -98829126 - AluY SINE Alu -8 303 1 21 57 0 0 chr13 20915969 20916004 -98828894 + AT_rich Low_complexity Low_complexity 1 35 0 312 91 0 0 chr13 20916078 20916122 -98828776 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 0 0 0 chr13 20917141 20917165 -98827733 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1049 33 8 0 chr13 20917184 20917306 -98827592 - AluY SINE Alu -188 123 1 712 68 4 2 chr13 20917527 20917777 -98827121 + AluY SINE Alu 1 307 -4 1725 229 106 8 chr13 20917948 20918468 -98826430 - MER90 LTR ERV1 -4 571 1 1972 129 0 10 chr13 20919379 20919673 -98825225 - AluSg SINE Alu -19 291 1 643 89 68 0 chr13 20920068 20920402 -98824496 + (TA)n Simple_repeat Simple_repeat 1 356 0 25 0 0 0 chr13 20920410 20920435 -98824463 + AT_rich Low_complexity Low_complexity 1 25 0 321 207 0 0 chr13 20920572 20920659 -98824239 + (CCA)n Simple_repeat Simple_repeat 3 89 0 564 241 0 0 chr13 20920680 20920854 -98824044 + (CCA)n Simple_repeat Simple_repeat 3 176 0 639 178 18 12 chr13 20920890 20921059 -98823839 + (CACCAT)n Simple_repeat Simple_repeat 1 170 0 995 298 108 34 chr13 20921609 20922217 -98822681 - MER115 DNA AcHobo -9 684 1 236 250 0 0 chr13 20922215 20922267 -98822631 + LTR30 LTR ERV1 1 52 -670 * 1626 109 122 170 chr13 20922304 20922663 -98822235 + LTR12 LTR ERV1 55 389 -325 1940 144 0 3 chr13 20922663 20922961 -98821937 + AluY SINE Alu 1 297 -14 1626 109 122 170 chr13 20922961 20923061 -98821837 + LTR12 LTR ERV1 389 492 -222 26 30 0 0 chr13 20923164 20923197 -98821701 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr13 20923246 20923277 -98821621 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr13 20923591 20923631 -98821267 + AT_rich Low_complexity Low_complexity 1 40 0 2399 57 7 13 chr13 20924658 20924957 -98819941 + AluY SINE Alu 1 297 -14 6761 53 21 0 chr13 20925159 20925372 -98819526 - L1PA7 LINE L1 -3 6151 5944 2034 68 0 19 chr13 20925372 20925636 -98819262 - AluY SINE Alu -15 296 38 6761 53 21 0 chr13 20925636 20926482 -98818416 - L1PA7 LINE L1 -210 5944 5107 687 39 39 10 chr13 20926482 20926584 -98818314 + L1P LINE L1 4617 4721 -1425 * 2285 239 81 49 chr13 20926579 20928097 -98816801 + L1ME2 LINE L1 4214 5793 -371 726 146 37 7 chr13 20928112 20928258 -98816640 - L1MD3 LINE L1 0 7995 7632 994 219 259 77 chr13 20928261 20928791 -98816107 + MER51A LTR ERV1 1 626 -8 2344 188 68 10 chr13 20928816 20929316 -98815582 - L1MC3 LINE L1 -157 7628 7100 1081 212 92 15 chr13 20929369 20929694 -98815204 + L1ME2 LINE L1 5807 6156 -8 186 340 170 0 chr13 20930966 20931066 -98813832 - L2 LINE L2 -2 3270 3154 309 135 0 0 chr13 20932040 20932092 -98812806 + (CA)n Simple_repeat Simple_repeat 2 53 0 2413 69 0 0 chr13 20932702 20933008 -98811890 + AluY SINE Alu 1 306 -5 1597 259 25 66 chr13 20933008 20933764 -98811134 - L1ME3A LINE L1 -192 6238 5514 373 335 101 8 chr13 20933777 20934025 -98810873 - L1ME3A LINE L1 -905 5501 5231 307 284 142 24 chr13 20934228 20934397 -98810501 - L1ME3A LINE L1 -1313 5093 4905 649 195 84 39 chr13 20934405 20934559 -98810339 + FRAM SINE Alu 1 158 -18 228 236 31 87 chr13 20934562 20934689 -98810209 - L1ME3A LINE L1 -1511 4895 4776 23 54 0 0 chr13 20934760 20934797 -98810101 + AT_rich Low_complexity Low_complexity 1 37 0 373 201 102 76 chr13 20934885 20935222 -98809676 - L1MEc LINE L1 -3795 2611 2322 2542 151 26 16 chr13 20935236 20935740 -98809158 - L1MA8 LINE L1 0 6291 5783 21 36 0 0 chr13 20935894 20935922 -98808976 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr13 20936048 20936091 -98808807 + AT_rich Low_complexity Low_complexity 1 43 0 227 311 24 12 chr13 20936252 20936419 -98808479 - L1MEc LINE L1 -5071 1338 1170 205 135 39 0 chr13 20937775 20937827 -98807071 + (CGG)n Simple_repeat Simple_repeat 2 55 0 454 385 42 4 chr13 20938951 20939211 -98805687 + L3 LINE CR1 930 1199 -378 211 296 102 71 chr13 20939417 20939515 -98805383 + L3 LINE CR1 1472 1572 -5 1512 226 64 0 chr13 20939761 20940120 -98804778 - MLT1C-int LTR MaLR -989 382 1 1813 191 89 19 chr13 20940124 20940549 -98804349 - MLT1C LTR MaLR -7 460 6 576 248 47 0 chr13 20941001 20941150 -98803748 + MIR SINE MIR 81 236 -26 303 93 0 0 chr13 20941721 20941764 -98803134 + (TG)n Simple_repeat Simple_repeat 2 44 0 2844 25 0 0 chr13 20942626 20942966 -98801932 - AluYb8 SINE Alu 0 340 1 2252 130 24 3 chr13 20943396 20943774 -98801124 + L1PB3 LINE L1 5588 5973 -181 285 71 14 86 chr13 20943813 20943883 -98801015 + L1PB3 LINE L1 5956 6020 -134 2452 84 0 0 chr13 20947499 20947810 -98797088 + AluY SINE Alu 1 311 0 381 337 90 31 chr13 20948068 20948559 -98796339 - L2 LINE L2 -671 2643 2072 207 0 0 0 chr13 20949631 20949654 -98795244 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2221 88 7 0 chr13 20951207 20951501 -98793397 + AluY SINE Alu 1 296 -15 2549 51 0 3 chr13 20954480 20954792 -98790106 - AluY SINE Alu 0 311 1 1654 196 3 3 chr13 20955678 20955984 -98788914 + AluJo SINE Alu 1 306 -6 2994 209 22 57 chr13 20955985 20956490 -98788408 - L1MD1 LINE L1 -59 6183 5716 1785 170 0 21 chr13 20956490 20956798 -98788100 + AluJo SINE Alu 1 302 0 2994 209 22 57 chr13 20956798 20957141 -98787757 - L1MD1 LINE L1 -526 5716 5363 372 104 26 26 chr13 20957154 20957231 -98787667 + CT-rich Low_complexity Low_complexity 3 79 0 867 212 12 0 chr13 20957239 20957409 -98787489 - FRAM SINE Alu -4 172 1 1680 239 128 7 chr13 20957414 20958013 -98786885 - L1MD1 LINE L1 -821 5325 4654 886 177 0 6 chr13 20958011 20958186 -98786712 + L1MC/D LINE L1 5446 5619 -623 * 934 353 85 36 chr13 20958732 20960086 -98784812 + L2 LINE L2 748 2167 -1147 324 250 0 38 chr13 20960169 20960249 -98784649 + MER45A DNA AcHobo 1 77 -101 1502 135 23 0 chr13 20960302 20960562 -98784336 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr13 20960563 20960631 -98784267 + MER45A DNA AcHobo 100 168 -10 197 400 27 0 chr13 20960667 20960777 -98784121 + L2 LINE L2 2565 2677 -637 242 233 17 0 chr13 20960986 20961056 -98783842 - L1M1 LINE L1 -551 5752 5682 201 147 0 0 chr13 20961058 20961092 -98783806 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 285 283 67 2 chr13 20961125 20961368 -98783530 - L1ME LINE L1 -484 5637 5375 608 283 124 75 chr13 20961497 20962371 -98782527 - L1ME LINE L1 -873 5273 4358 308 289 59 17 chr13 20962569 20962858 -98782040 - L1ME LINE L1 -2166 3980 3682 266 195 79 0 chr13 20963337 20963501 -98781397 + (TA)n Simple_repeat Simple_repeat 2 178 0 479 154 10 58 chr13 20963571 20963675 -98781223 - AluJb SINE Alu -13 299 201 * 513 176 0 0 chr13 20963668 20963753 -98781145 - FRAM SINE Alu -73 103 19 607 210 11 11 chr13 20964595 20964771 -98780127 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 280 339 51 26 chr13 20965209 20965404 -98779494 - L2 LINE L2 -1 3312 3113 318 106 0 0 chr13 20965481 20965528 -98779370 + (TA)n Simple_repeat Simple_repeat 1 47 0 297 75 0 0 chr13 20965521 20965561 -98779337 + (CA)n Simple_repeat Simple_repeat 2 41 0 * 3092 63 0 0 chr13 20965561 20965959 -98778939 - MLT2A1 LTR ERVL -46 398 1 2132 108 3 7 chr13 20966967 20967264 -98777634 - AluSg SINE Alu -14 296 1 234 0 0 0 chr13 20968743 20968769 -98776129 + (CA)n Simple_repeat Simple_repeat 2 27 0 2352 87 3 10 chr13 20968797 20969109 -98775789 - AluY SINE Alu -1 310 1 332 238 109 30 chr13 20969430 20969531 -98775367 + MER110-int LTR ERV1 2748 2856 -1791 324 157 54 0 chr13 20969742 20969908 -98774990 + (TA)n Simple_repeat Simple_repeat 1 175 0 2230 106 0 3 chr13 20970153 20970446 -98774452 - AluY SINE Alu -19 292 1 2303 93 0 3 chr13 20970564 20970865 -98774033 - AluY SINE Alu -11 300 1 23 0 0 0 chr13 20970957 20970980 -98773918 + AT_rich Low_complexity Low_complexity 1 23 0 559 272 146 7 chr13 20970981 20971215 -98773683 - MIR SINE MIR -21 241 3 778 161 13 7 chr13 20971248 20971397 -98773501 + MER58B DNA MER1_type 177 326 -15 2314 50 7 27 chr13 20971733 20972033 -98772865 + AluY SINE Alu 1 294 -17 199 41 102 0 chr13 20972237 20972286 -98772612 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 2467 66 0 0 chr13 20972458 20972760 -98772138 + AluY SINE Alu 1 302 -9 315 0 0 0 chr13 20973934 20973969 -98770929 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 26 0 26 chr13 20974075 20974087 -98770811 + AT_rich Low_complexity Low_complexity 1 12 -26 4811 90 20 23 chr13 20974087 20974443 -98770455 + L1PB1 LINE L1 5417 5772 -379 387 0 0 0 chr13 20974443 20974486 -98770412 + (CA)n Simple_repeat Simple_repeat 2 44 0 4811 90 20 23 chr13 20974486 20974504 -98770394 + L1PB1 LINE L1 5772 5789 -362 1635 100 4 4 chr13 20974504 20974733 -98770165 + AluY SINE Alu 67 295 -16 4811 90 20 23 chr13 20974733 20974908 -98769990 + L1PB1 LINE L1 5789 5963 -188 3666 107 99 31 chr13 20974908 20975501 -98769397 - LTR12 LTR ERV1 0 688 46 2395 76 3 0 chr13 20975501 20975803 -98769095 + AluY SINE Alu 1 303 -8 3666 107 99 31 chr13 20975803 20975853 -98769045 - LTR12 LTR ERV1 -642 46 1 4811 90 20 23 chr13 20975853 20976036 -98768862 + L1PB1 LINE L1 5963 6149 -2 21 26 0 26 chr13 20976036 20976062 -98768836 + AT_rich Low_complexity Low_complexity 12 38 0 23 54 0 0 chr13 20976346 20976383 -98768515 + AT_rich Low_complexity Low_complexity 1 37 0 1786 139 7 53 chr13 20977818 20978120 -98766778 + AluSx SINE Alu 1 288 -24 287 299 58 73 chr13 20978673 20978810 -98766088 + L2 LINE L2 3138 3272 0 1005 149 56 5 chr13 20979861 20980075 -98764823 + L1MC3 LINE L1 7470 7694 -91 * 1723 164 138 61 chr13 20980070 20980268 -98764630 + L1MA6 LINE L1 5754 5935 -365 1800 155 14 0 chr13 20980268 20980578 -98764320 + AluSx SINE Alu 1 314 0 1723 164 138 61 chr13 20980578 20980882 -98764016 + L1MA6 LINE L1 5935 6298 -2 554 138 21 0 chr13 20980879 20980973 -98763925 + L1MC3 LINE L1 7677 7772 -13 * 23 0 0 0 chr13 20982507 20982530 -98762368 + AT_rich Low_complexity Low_complexity 1 23 0 269 334 141 10 chr13 20983770 20983979 -98760919 + MIR SINE MIR 18 248 -14 1673 167 37 14 chr13 20984200 20984554 -98760344 + L1MA4 LINE L1 5939 6300 0 924 269 48 85 chr13 20984737 20985221 -98759677 - MLT1K LTR MaLR 0 588 123 220 342 89 0 chr13 20985992 20986071 -98758827 + MIR SINE MIR 26 111 -97 4569 167 26 2 chr13 20986588 20987698 -98757200 + L1MA4A LINE L1 4431 5564 -736 3186 141 94 0 chr13 20987699 20988304 -98756594 + L1MA4A LINE L1 5639 6300 -3 200 211 18 18 chr13 20988411 20988468 -98756430 + (TG)n Simple_repeat Simple_repeat 2 58 0 3924 137 31 3 chr13 20988512 20989211 -98755687 + L1MA6 LINE L1 5582 6300 0 607 271 49 31 chr13 20989285 20989510 -98755388 + MIR SINE MIR 34 262 0 2133 166 64 5 chr13 20989607 20990011 -98754887 + MSTA LTR MaLR 1 428 0 279 183 28 14 chr13 20990099 20990170 -98754728 - Tigger5 DNA MER2_type -1 2322 2251 2458 55 13 0 chr13 20990394 20990701 -98754197 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 20990701 20990729 -98754169 + AT_rich Low_complexity Low_complexity 1 28 0 244 61 0 41 chr13 20991100 20991149 -98753749 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3043 121 116 82 chr13 20991264 20992023 -98752875 - LTR1 LTR ERV1 0 785 1 23 0 0 0 chr13 20992288 20992311 -98752587 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr13 20992707 20992728 -98752170 + (TA)n Simple_repeat Simple_repeat 2 22 0 2326 96 3 16 chr13 20992731 20993045 -98751853 - AluY SINE Alu -1 310 1 1996 111 11 0 chr13 20993337 20993608 -98751290 - AluSp SINE Alu -16 297 24 2532 118 8 0 chr13 20995296 20995668 -98749230 + THE1C LTR MaLR 1 375 0 236 204 0 0 chr13 20996160 20996209 -98748689 + A-rich Low_complexity Low_complexity 1 49 0 2500 62 7 0 chr13 20997720 20998029 -98746869 - AluY SINE Alu 0 311 1 314 61 20 0 chr13 20998031 20998080 -98746818 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 585 253 22 11 chr13 20998154 20998332 -98746566 - HAL1 LINE L1 -705 1802 1623 204 347 14 20 chr13 20998857 20999004 -98745894 + CT-rich Low_complexity Low_complexity 3 148 0 320 267 108 23 chr13 20999204 20999380 -98745518 - HAL1 LINE L1 -886 1621 1431 2192 84 3 10 chr13 20999415 20999711 -98745187 - AluY SINE Alu -17 294 1 258 274 0 0 chr13 20999722 20999773 -98745125 + MIR SINE MIR 73 123 -85 1974 115 36 20 chr13 20999802 21000106 -98744792 - AluSq SINE Alu -4 309 1 190 302 19 0 chr13 21000157 21000210 -98744688 + L2 LINE L2 2983 3036 -236 2167 140 62 12 chr13 21000229 21000635 -98744263 + MSTB LTR MaLR 1 426 0 2329 105 0 0 chr13 21000654 21000958 -98743940 - AluSg1 SINE Alu -5 304 1 483 307 34 11 chr13 21001377 21001553 -98743345 + MIR SINE MIR 14 193 -69 424 141 45 34 chr13 21002599 21002776 -98742122 + (TA)n Simple_repeat Simple_repeat 1 179 0 6143 149 59 19 chr13 21002831 21004015 -98740883 + Tigger3b DNA MER2_type 1 1231 0 22 0 0 0 chr13 21004897 21004919 -98739979 + AT_rich Low_complexity Low_complexity 1 22 0 643 260 41 6 chr13 21005847 21006016 -98738882 - MIR SINE MIR -14 248 74 2253 90 17 0 chr13 21006026 21006325 -98738573 + AluY SINE Alu 1 304 -7 780 202 85 4 chr13 21006325 21006597 -98738301 + L1MB3 LINE L1 3041 3334 -2812 1996 92 46 4 chr13 21006608 21006889 -98738009 + AluSc SINE Alu 1 293 -16 4324 200 42 14 chr13 21006890 21008695 -98736203 + L1MB3 LINE L1 4327 6181 -2 306 343 126 0 chr13 21009036 21009211 -98735687 - MIR SINE MIR -17 245 49 2442 59 3 3 chr13 21009244 21009550 -98735348 - AluY SINE Alu -5 306 1 435 38 0 0 chr13 21010025 21010078 -98734820 + (TG)n Simple_repeat Simple_repeat 2 54 0 1996 141 0 10 chr13 21011511 21011824 -98733074 - AluSx SINE Alu -2 310 1 197 116 0 23 chr13 21012534 21012577 -98732321 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 24 53 0 0 chr13 21012709 21012747 -98732151 + AT_rich Low_complexity Low_complexity 1 38 0 470 314 100 32 chr13 21013035 21013106 -98731792 - L1ME4a LINE L1 -209 5912 5847 2179 109 7 0 chr13 21013106 21013400 -98731498 - AluSp SINE Alu -7 306 11 470 314 100 32 chr13 21013400 21013669 -98731229 - L1ME4a LINE L1 -274 5847 5549 227 255 0 0 chr13 21014213 21014260 -98730638 + (CA)n Simple_repeat Simple_repeat 1 47 0 24 85 0 0 chr13 21015205 21015264 -98729634 + AT_rich Low_complexity Low_complexity 1 59 0 355 326 68 7 chr13 21015275 21015422 -98729476 + MIR SINE MIR 21 176 -86 374 293 95 48 chr13 21015971 21016391 -98728507 - L1M4 LINE L1 -2955 3191 2752 479 194 40 49 chr13 21016788 21016827 -98728071 - L1ME1 LINE L1 -5 6161 6123 2507 41 0 3 chr13 21016827 21017121 -98727777 + AluY SINE Alu 1 293 -18 479 194 40 49 chr13 21017121 21017276 -98727622 - L1ME1 LINE L1 -43 6123 5965 336 232 37 0 chr13 21017433 21017515 -98727383 + L1MC1 LINE L1 5997 6081 -252 330 258 6 50 chr13 21017518 21017677 -98727221 - MER52A LTR ERV1 -3 1752 1601 623 206 21 185 chr13 21017677 21018270 -98726628 - MER52A LTR ERV1 -141 495 283 1704 169 11 0 chr13 21018495 21018773 -98726125 - AluJo SINE Alu -31 281 1 235 299 93 31 chr13 21019020 21019117 -98725781 + L2 LINE L2 3162 3264 -8 363 302 76 6 chr13 21019234 21019406 -98725492 + MIR SINE MIR 21 204 -58 989 283 187 38 chr13 21021804 21022829 -98722069 - L2 LINE L2 -52 3261 1968 2151 130 3 13 chr13 21024234 21024549 -98720349 - AluSq SINE Alu -1 312 1 207 139 0 0 chr13 21024961 21024997 -98719901 + (TG)n Simple_repeat Simple_repeat 2 37 0 348 255 89 25 chr13 21025231 21025388 -98719510 - MLT1D LTR MaLR -262 243 77 4246 217 28 28 chr13 21025423 21026408 -98718490 + L1MC2 LINE L1 4378 5361 -983 2629 90 19 3 chr13 21026408 21026775 -98718123 + THE1C LTR MaLR 1 373 -2 4246 217 28 28 chr13 21026775 21027631 -98717267 + L1MC2 LINE L1 5361 6226 -118 321 26 0 0 chr13 21027631 21027669 -98717229 + (TG)n Simple_repeat Simple_repeat 1 38 0 4246 217 28 28 chr13 21027669 21027789 -98717109 + L1MC2 LINE L1 6226 6344 0 3054 171 35 62 chr13 21027765 21028168 -98716730 + L1MB7 LINE L1 5297 5709 -475 * 2018 91 3 24 chr13 21028168 21028482 -98716416 + AluY SINE Alu 1 308 0 3054 171 35 62 chr13 21028482 21028934 -98715964 + L1MB7 LINE L1 5709 6130 -54 2271 72 21 0 chr13 21029035 21029326 -98715572 - AluY SINE Alu -14 297 1 2317 98 0 25 chr13 21029870 21030185 -98714713 - AluY SINE Alu -4 307 1 3649 171 17 65 chr13 21030229 21031212 -98713686 + L1MA8 LINE L1 4857 5760 -531 2322 107 0 0 chr13 21031212 21031521 -98713377 + AluSg SINE Alu 1 309 -1 3649 171 17 65 chr13 21031521 21031834 -98713064 + L1MA8 LINE L1 5760 6086 -205 210 375 55 34 chr13 21031988 21032225 -98712673 - L2 LINE L2 -661 2653 2412 2175 111 7 0 chr13 21032348 21032645 -98712253 + AluSg SINE Alu 1 299 -11 1603 174 7 43 chr13 21032964 21033268 -98711630 - AluJb SINE Alu -15 297 5 2511 73 0 0 chr13 21033291 21033592 -98711306 - AluY SINE Alu -4 307 7 678 84 0 0 chr13 21033933 21034028 -98710870 - AluY SINE Alu 0 311 217 23 33 0 0 chr13 21034313 21034343 -98710555 + AT_rich Low_complexity Low_complexity 1 30 0 1550 195 25 42 chr13 21037507 21037938 -98706960 - L1MB7 LINE L1 -9 6175 5752 1169 248 26 0 chr13 21037942 21038253 -98706645 + L1MB7 LINE L1 5404 5722 -456 238 302 10 21 chr13 21039173 21039269 -98705629 + L2 LINE L2 3177 3271 -1 266 328 136 39 chr13 21039327 21039885 -98705013 - L2 LINE L2 -573 2741 2130 1290 218 120 19 chr13 21039976 21040393 -98704505 + MLT1C LTR MaLR 3 461 -6 46 45 0 0 chr13 21041672 21041739 -98703159 + AT_rich Low_complexity Low_complexity 1 67 0 2345 112 0 6 chr13 21042354 21042668 -98702230 - AluSx SINE Alu 0 312 1 180 0 0 0 chr13 21042746 21042766 -98702132 + (CA)n Simple_repeat Simple_repeat 1 20 0 26 23 0 23 chr13 21043089 21043112 -98701786 + AT_rich Low_complexity Low_complexity 1 24 -19 2165 94 0 3 chr13 21043112 21043398 -98701500 + AluSg SINE Alu 1 285 -25 26 23 0 23 chr13 21043398 21043418 -98701480 + AT_rich Low_complexity Low_complexity 24 43 0 279 285 69 32 chr13 21043994 21044240 -98700658 - L1M4 LINE L1 -1995 4151 3897 228 35 0 0 chr13 21044313 21044342 -98700556 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 298 298 114 32 chr13 21044609 21044767 -98700131 + L2 LINE L2 3102 3272 0 610 287 36 24 chr13 21045066 21045400 -98699498 + L1MEd LINE L1 920 1257 -4862 352 316 94 33 chr13 21045491 21045703 -98699195 + L1MEd LINE L1 1437 1661 -4649 1538 95 0 25 chr13 21045834 21046077 -98698821 + L1MC/D LINE L1 5321 5557 -787 325 298 12 0 chr13 21046177 21046261 -98698637 - Tigger7 DNA MER2_type -318 232 148 4468 141 47 44 chr13 21046302 21046395 -98698503 - L1MA7 LINE L1 -60 6231 6140 3352 136 7 31 chr13 21046395 21046983 -98697915 + L1PA16 LINE L1 5584 6157 -9 4468 141 47 44 chr13 21046983 21047845 -98697053 - L1MA7 LINE L1 -151 6140 5273 2173 100 0 0 chr13 21050550 21050830 -98694068 + AluSc SINE Alu 1 280 -29 2409 82 0 6 chr13 21050866 21051181 -98693717 + AluSq SINE Alu 1 313 0 199 324 28 0 chr13 21051201 21051272 -98693626 + MIR SINE MIR 57 129 -133 302 358 7 7 chr13 21051717 21051868 -98693030 + LTR33 LTR ERVL 1 151 -370 197 197 16 0 chr13 21052101 21052162 -98692736 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 929 118 0 0 chr13 21052621 21052748 -98692150 - AluJb SINE Alu -16 296 170 733 107 0 9 chr13 21052864 21052976 -98691922 + LTR1 LTR ERV1 382 492 -293 1660 94 0 18 chr13 21052976 21053200 -98691698 - AluY SINE Alu -91 220 1 362 208 28 0 chr13 21053202 21053308 -98691590 + L1ME2 LINE L1 4611 4719 -1427 * 5057 144 42 22 chr13 21053284 21054510 -98690388 + L1MA8 LINE L1 5042 6290 -1 1780 244 47 43 chr13 21054542 21055618 -98689280 + L1ME2 LINE L1 4694 5781 -381 2315 100 0 25 chr13 21055618 21055797 -98689101 - AluSq SINE Alu -2 311 142 2219 98 3 49 chr13 21055797 21056125 -98688773 - AluSp SINE Alu 0 313 1 2315 100 0 25 chr13 21056125 21056264 -98688634 - AluSq SINE Alu -171 142 1 1780 244 47 43 chr13 21056264 21056337 -98688561 + L1ME2 LINE L1 5781 5852 -310 290 311 40 13 chr13 21056358 21056509 -98688389 + L1ME2 LINE L1 5910 6064 -100 * 5386 211 92 52 chr13 21056504 21058159 -98686739 + L1PA13 LINE L1 5293 5438 -725 418 162 0 0 chr13 21058159 21058227 -98686671 + MLT1A1 LTR MaLR 248 315 -50 5386 211 92 52 chr13 21058227 21058982 -98685916 + L1PA13 LINE L1 5438 6162 -1 253 270 40 0 chr13 21058988 21059114 -98685784 + (TA)n Simple_repeat Simple_repeat 1 131 0 189 0 0 0 chr13 21059980 21060001 -98684897 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 277 384 38 27 chr13 21060072 21060257 -98684641 - MIR SINE MIR -74 188 2 6800 114 7 9 chr13 21060440 21061411 -98683487 - LTR5 LTR ERVK 0 969 1 493 291 53 68 chr13 21061728 21061824 -98683074 - MIR SINE MIR 0 262 166 2225 109 0 26 chr13 21061824 21062135 -98682763 - AluSc SINE Alu -6 303 1 493 291 53 68 chr13 21062135 21062303 -98682595 - MIR SINE MIR -96 166 2 2060 120 21 3 chr13 21062756 21063047 -98681851 - AluSq SINE Alu -17 296 1 2064 156 0 0 chr13 21063462 21063764 -98681134 + AluSx SINE Alu 1 302 -10 2449 83 0 0 chr13 21064329 21064629 -98680269 - AluY SINE Alu -11 300 1 2135 106 0 0 chr13 21065181 21065498 -98679400 - AluY SINE Alu 0 317 1 4639 170 14 21 chr13 21065509 21066228 -98678670 - L1MA6 LINE L1 -5 6295 5583 1673 94 0 45 chr13 21066228 21066472 -98678426 - AluSc SINE Alu -5 304 72 4639 170 14 21 chr13 21066472 21066685 -98678213 - L1MA6 LINE L1 -717 5583 5370 1129 152 8 25 chr13 21066685 21066928 -98677970 + L1 LINE L1 5091 5329 -817 2464 135 8 0 chr13 21066928 21067320 -98677578 + L1PA13 LINE L1 5750 6144 -19 1864 67 28 0 chr13 21067351 21067606 -98677292 + L1PA8 LINE L1 5854 6115 -57 1900 225 83 62 chr13 21067842 21068012 -98676886 - MLT1E1 LTR MaLR 0 654 489 1977 135 3 42 chr13 21068012 21068324 -98676574 - AluSx SINE Alu -12 300 1 1900 225 83 62 chr13 21068324 21068385 -98676513 - MLT1E1 LTR MaLR -165 489 431 228 35 0 0 chr13 21068385 21068414 -98676484 + (TG)n Simple_repeat Simple_repeat 1 29 0 1900 225 83 62 chr13 21068414 21068822 -98676076 - MLT1E1 LTR MaLR -223 431 1 2447 64 18 12 chr13 21069033 21069363 -98675535 - L1PA8 LINE L1 0 6172 5841 2211 95 0 14 chr13 21069374 21069668 -98675230 - AluSx SINE Alu -18 294 5 403 338 35 25 chr13 21069995 21070309 -98674589 + L1MB5 LINE L1 39 355 -6029 3287 238 29 41 chr13 21070430 21071728 -98673170 + L1MB5 LINE L1 554 1842 -4542 848 130 8 23 chr13 21071777 21071908 -98672990 + AluSg/x SINE Alu 161 289 -20 5185 236 58 38 chr13 21071908 21073744 -98671154 + L1MB5 LINE L1 3279 5076 -1334 2238 101 0 7 chr13 21073744 21074042 -98670856 + AluY SINE Alu 1 296 -15 5185 236 58 38 chr13 21074042 21074455 -98670443 + L1MB5 LINE L1 5076 5479 -931 2029 147 0 10 chr13 21074455 21074767 -98670131 - AluSq SINE Alu -4 309 1 5185 236 58 38 chr13 21074767 21074857 -98670041 + L1MB5 LINE L1 5479 5566 -844 1454 162 3 81 chr13 21074857 21075141 -98669757 + AluJo SINE Alu 15 276 -36 5185 236 58 38 chr13 21075141 21075852 -98669046 + L1MB5 LINE L1 5566 6402 -8 341 306 91 30 chr13 21075924 21076123 -98668775 + MIR SINE MIR 46 256 -6 1681 181 18 15 chr13 21076650 21076992 -98667906 + MER2 DNA MER2_type 1 343 -1 902 193 0 0 chr13 21077034 21077184 -98667714 - AluSg/x SINE Alu -14 296 147 2344 155 50 17 chr13 21077184 21077649 -98667249 - LTR12 LTR ERV1 -234 480 1 689 162 8 0 chr13 21077681 21077798 -98667100 - FLAM_C SINE Alu -15 118 1 2183 82 0 0 chr13 21077919 21078200 -98666698 - AluSq SINE Alu -32 281 1 629 302 57 41 chr13 21078402 21078862 -98666036 + MER21-int LTR ERV1 3630 4096 -95 247 362 32 0 chr13 21080028 21080122 -98664776 + L2 LINE L2 3212 3308 -5 24 53 0 0 chr13 21080880 21080918 -98663980 + AT_rich Low_complexity Low_complexity 1 38 0 33 66 0 0 chr13 21080939 21081000 -98663898 + AT_rich Low_complexity Low_complexity 1 61 0 2324 72 3 0 chr13 21081898 21082189 -98662709 - AluY SINE Alu -19 292 1 957 157 0 0 chr13 21085996 21086149 -98658749 + MSTC LTR MaLR 1 153 -275 1640 164 4 4 chr13 21086179 21086441 -98658457 + AluJo SINE Alu 29 290 -22 1521 147 27 31 chr13 21086445 21086738 -98658160 + MSTC LTR MaLR 137 428 0 2368 67 0 7 chr13 21087350 21087648 -98657250 + AluY SINE Alu 1 296 -15 2117 109 3 0 chr13 21087657 21087940 -98656958 + AluSg SINE Alu 7 290 -20 189 0 0 0 chr13 21089104 21089125 -98655773 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2251 118 3 0 chr13 21089609 21089913 -98654985 + AluSg SINE Alu 1 305 -5 2246 118 0 0 chr13 21089919 21090216 -98654682 + AluSg SINE Alu 1 297 -13 2399 75 0 3 chr13 21090322 21090628 -98654270 - AluY SINE Alu -6 305 1 2192 222 62 22 chr13 21090628 21091273 -98653625 - Tigger6a DNA MER2_type -64 1019 349 2012 92 14 24 chr13 21091295 21091587 -98653311 - AluSx SINE Alu -23 289 1 180 0 0 0 chr13 21091768 21091788 -98653110 + (T)n Simple_repeat Simple_repeat 1 20 0 1183 107 0 0 chr13 21091811 21091970 -98652928 - AluSq SINE Alu -33 280 122 183 152 0 0 chr13 21091970 21092016 -98652882 + (TA)n Simple_repeat Simple_repeat 2 47 0 885 88 72 0 chr13 21092019 21092144 -98652754 - AluSg SINE Alu -176 134 1 240 226 0 0 chr13 21093037 21093099 -98651799 + T-rich Low_complexity Low_complexity 1 62 0 318 286 188 45 chr13 21093102 21093256 -98651642 - MIR3 SINE MIR -13 195 20 26 30 0 0 chr13 21094745 21094778 -98650120 + AT_rich Low_complexity Low_complexity 1 33 0 2126 78 34 3 chr13 21095220 21095513 -98649385 - AluY SINE Alu -9 302 1 28 86 0 0 chr13 21095719 21095789 -98649109 + AT_rich Low_complexity Low_complexity 1 70 0 514 246 179 17 chr13 21096472 21096651 -98648247 - MIR SINE MIR -19 243 36 282 250 88 12 chr13 21097324 21097404 -98647494 + L2 LINE L2 2093 2178 -1136 22 0 0 0 chr13 21098322 21098344 -98646554 + AT_rich Low_complexity Low_complexity 1 22 0 369 192 92 23 chr13 21098373 21098503 -98646395 - L1MC5 LINE L1 -39 7922 7784 30 0 0 0 chr13 21098846 21098876 -98646022 + AT_rich Low_complexity Low_complexity 1 30 0 2178 71 0 3 chr13 21098876 21099195 -98645703 + AluY SINE Alu 1 318 0 2296 80 0 32 chr13 21099613 21099925 -98644973 + AluY SINE Alu 1 302 -9 2606 48 0 7 chr13 21100380 21100690 -98644208 - AluY SINE Alu -1 310 3 1064 250 113 46 chr13 21102231 21102666 -98642232 - L1ME3A LINE L1 -9 6161 5664 2534 68 0 6 chr13 21102666 21102977 -98641921 - AluY SINE Alu -2 309 1 1064 250 113 46 chr13 21102977 21103216 -98641682 - L1ME3A LINE L1 -506 5664 5442 338 251 145 51 chr13 21103392 21103624 -98641274 + MLT1G3 LTR MaLR 156 447 -108 870 251 163 44 chr13 21103784 21104256 -98640642 - MLT1G LTR MaLR 0 590 30 1077 155 0 0 chr13 21104509 21104670 -98640228 - AluSg/x SINE Alu -15 297 137 581 265 105 43 chr13 21104681 21105054 -98639844 - L1ME3A LINE L1 -1036 5110 4715 255 61 0 0 chr13 21105065 21105098 -98639800 + (CA)n Simple_repeat Simple_repeat 2 34 0 863 245 88 58 chr13 21105098 21105653 -98639245 - L1ME3A LINE L1 -1531 4615 4044 7308 53 7 47 chr13 21105831 21106820 -98638078 - SVA Other Other -3 1383 434 261 0 0 0 chr13 21106991 21107020 -98637878 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 364 304 0 40 chr13 21107188 21107296 -98637602 + L2 LINE L2 3194 3298 -15 2247 100 0 3 chr13 21107296 21107597 -98637301 + AluY SINE Alu 1 300 -11 364 304 0 40 chr13 21107597 21107613 -98637285 + L2 LINE L2 3298 3313 0 692 11 11 0 chr13 21108838 21108925 -98635973 - L1PA3 LINE L1 0 6155 6068 1906 182 11 3 chr13 21109218 21109587 -98635311 - L1MB1 LINE L1 -103 6065 5694 272 172 10 91 chr13 21109593 21109692 -98635206 + L1MB1 LINE L1 5587 5677 -494 308 305 76 8 chr13 21109701 21109819 -98635079 - MIR SINE MIR -122 140 15 23 0 0 0 chr13 21110060 21110083 -98634815 + AT_rich Low_complexity Low_complexity 1 23 0 752 253 0 0 chr13 21110330 21110480 -98634418 - FRAM SINE Alu -16 150 1 2346 66 7 23 chr13 21110489 21110794 -98634104 - AluY SINE Alu -11 300 1 587 142 38 0 chr13 21111164 21111270 -98633628 - L1M3 LINE L1 -365 5803 5694 2456 70 0 0 chr13 21111749 21112050 -98632848 + AluY SINE Alu 1 301 -10 2964 200 16 8 chr13 21112919 21113627 -98631271 - L1MD2 LINE L1 -471 5888 5177 345 314 86 69 chr13 21113636 21113881 -98631017 + L1ME3 LINE L1 5618 5866 -296 359 31 31 155 chr13 21113897 21114058 -98630840 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 336 48 0 0 chr13 21114497 21114539 -98630359 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2560 67 0 3 chr13 21114833 21115146 -98629752 - AluSq SINE Alu -1 312 1 2435 122 11 6 chr13 21115658 21116020 -98628878 + THE1B LTR MaLR 1 364 0 11102 95 33 2 chr13 21116020 21117552 -98627346 + THE1B-int LTR MaLR 1 1580 0 2569 114 0 8 chr13 21117552 21117919 -98626979 + THE1B LTR MaLR 1 364 0 649 158 73 43 chr13 21118102 21118266 -98626632 - MLT1E LTR MaLR -63 530 362 * 1507 199 13 10 chr13 21118258 21118569 -98626329 + MLT1A2 LTR MaLR 63 374 0 291 182 23 11 chr13 21118775 21118863 -98626035 + CT-rich Low_complexity Low_complexity 3 91 0 2478 68 3 0 chr13 21119437 21119745 -98625153 + AluY SINE Alu 2 310 -1 950 182 152 20 chr13 21120139 21120435 -98624463 + LTR54B LTR ERV1 3 337 -161 802 223 107 93 chr13 21120624 21121064 -98623834 - MER4C LTR ERV1 0 465 20 297 0 0 0 chr13 21121067 21121100 -98623798 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2042 111 4 0 chr13 21121100 21121379 -98623519 - AluSx SINE Alu -32 280 1 5873 145 45 91 chr13 21121380 21121781 -98623117 - LTR49-int LTR ERV1 -987 5344 4926 2424 69 0 7 chr13 21121781 21122087 -98622811 + AluY SINE Alu 1 304 -7 5873 145 45 91 chr13 21122087 21122130 -98622768 - LTR49-int LTR ERV1 -1405 4926 4883 2400 93 7 3 chr13 21122130 21122440 -98622458 + AluY SINE Alu 1 311 0 5873 145 45 91 chr13 21122440 21122537 -98622361 - LTR49-int LTR ERV1 -1448 4883 4783 2665 122 38 2 chr13 21122537 21122954 -98621944 - L1PA16 LINE L1 -9 6157 5726 5873 145 45 91 chr13 21122954 21123425 -98621473 - LTR49-int LTR ERV1 -1548 4783 4292 360 150 17 0 chr13 21123425 21123485 -98621413 + AluS SINE Alu 233 293 -7 5873 145 45 91 chr13 21123485 21123976 -98620922 - LTR49-int LTR ERV1 -2039 4292 3853 2216 112 13 0 chr13 21123976 21124279 -98620619 + AluSq SINE Alu 1 307 -6 5873 145 45 91 chr13 21124279 21124324 -98620574 - LTR49-int LTR ERV1 -2478 3853 3807 1201 99 17 28 chr13 21124324 21124505 -98620393 - 7SLRNA srpRNA srpRNA -9 311 133 2526 196 69 94 chr13 21124505 21125502 -98619396 - LTR49-int LTR ERV1 -1606 3274 2303 3883 30 17 0 chr13 21125505 21125978 -98618920 + LTR2B LTR ERV1 10 490 0 1136 227 42 73 chr13 21125978 21126538 -98618360 - LTR49-int LTR ERV1 -4263 3274 1580 462 222 26 98 chr13 21126507 21126660 -98618238 - LTR49-int LTR ERV1 -4146 2185 2044 * 1270 151 36 0 chr13 21126666 21126891 -98618007 + MER50 LTR ERV1 1 233 -501 1122 138 16 0 chr13 21127087 21127276 -98617622 + MER4B LTR ERV1 400 591 -19 786 85 53 116 chr13 21127276 21127465 -98617433 + PABL_A-int LTR ERV1 629 805 -4210 * 3619 73 93 41 chr13 21127462 21127661 -98617237 + PABL_A-int LTR ERV1 1803 1990 -4608 1985 124 22 38 chr13 21127661 21127976 -98616922 - AluSp SINE Alu -3 310 1 3619 73 93 41 chr13 21127976 21128435 -98616463 + PABL_A-int LTR ERV1 1990 2495 -4103 1064 145 90 10 chr13 21128435 21128635 -98616263 - LTR8 LTR ERV1 -434 257 42 910 83 8 0 chr13 21128635 21128756 -98616142 - AluSp SINE Alu -16 297 176 3703 60 43 0 chr13 21128756 21129226 -98615672 + LTR2B LTR ERV1 1 490 0 5360 92 58 19 chr13 21129226 21130085 -98614813 + Harlequin LTR ERV1 1 893 -6003 * 6364 63 46 0 chr13 21130080 21131038 -98613860 + Harlequin LTR ERV1 1572 2573 -4323 23068 112 11 9 chr13 21131039 21134572 -98610326 + Harlequin LTR ERV1 3353 6892 -4 3707 55 45 0 chr13 21134575 21135044 -98609854 + LTR2B LTR ERV1 1 490 0 352 105 35 0 chr13 21135044 21135101 -98609797 - AluSp SINE Alu -124 179 121 862 132 0 22 chr13 21135101 21135237 -98609661 - AluJo/FLAM SINE Alu -169 133 1 2284 90 0 82 chr13 21135237 21135283 -98609615 + MER4A-int LTR ERV1 2684 2732 -3866 2538 77 0 3 chr13 21135283 21135595 -98609303 - AluY SINE Alu 0 311 1 2284 90 0 82 chr13 21135595 21136037 -98608861 + MER4A-int LTR ERV1 2732 3132 -3466 8870 93 47 36 chr13 21136066 21136166 -98608732 + MER4A-int LTR ERV1 3453 3550 -3048 2058 94 7 7 chr13 21136166 21136452 -98608446 + AluY SINE Alu 1 286 -25 8870 93 47 36 chr13 21136452 21137968 -98606930 + MER4A-int LTR ERV1 3550 6598 0 281 125 375 14 chr13 21137970 21138042 -98606856 + MER4A LTR ERV1 1 98 -566 1864 120 8 46 chr13 21138042 21138400 -98606498 + MER4A LTR ERV1 262 664 0 * 2747 174 8 40 chr13 21138400 21138912 -98605986 + MER50 LTR ERV1 228 722 -12 220 200 0 0 chr13 21138983 21139038 -98605860 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 430 244 43 43 chr13 21139038 21139184 -98605714 - MER41-int LTR ERV1 -3703 2243 2121 2440 113 86 60 chr13 21139281 21139734 -98605164 + MER4C LTR ERV1 1 465 0 321 185 62 0 chr13 21139759 21139824 -98605074 + LTR9 LTR ERV1 544 612 0 6561 157 114 75 chr13 21139824 21140589 -98604309 + LTR9-int LTR ERV1 283 1017 -5581 321 26 0 0 chr13 21140589 21140627 -98604271 + (TG)n Simple_repeat Simple_repeat 2 39 0 6561 157 114 75 chr13 21140627 21141420 -98603478 + LTR9-int LTR ERV1 1017 1995 -4603 2085 142 0 0 chr13 21141420 21141715 -98603183 + AluSx SINE Alu 1 295 -17 6561 157 114 75 chr13 21141715 21142226 -98602672 + LTR9-int LTR ERV1 1995 2485 -4113 416 45 80 0 chr13 21142389 21142477 -98602421 + GA-rich Low_complexity Low_complexity 2 96 0 3990 147 82 57 chr13 21143398 21143431 -98601467 + LTR9-int LTR ERV1 2924 2955 -3643 2253 99 3 0 chr13 21143431 21143724 -98601174 + AluY SINE Alu 1 294 -17 3990 147 82 57 chr13 21143724 21144724 -98600174 + LTR9-int LTR ERV1 2955 3983 -2615 4761 118 122 46 chr13 21144726 21146166 -98598732 - pTR5 LTR ERV1 0 2438 743 6761 139 56 50 chr13 21146166 21147553 -98597345 + LTR9-int LTR ERV1 3979 5357 -1241 408 20 0 0 chr13 21147553 21147602 -98597296 + (TA)n Simple_repeat Simple_repeat 2 50 0 1954 151 0 0 chr13 21147607 21147891 -98597007 - AluSx SINE Alu -28 284 1 6761 139 56 50 chr13 21147891 21147928 -98596970 + LTR9-int LTR ERV1 5360 5417 -1181 822 179 155 29 chr13 21147936 21148143 -98596755 + MER4C LTR ERV1 1 233 -232 3408 112 47 4 chr13 21148158 21148648 -98596250 + MER9 LTR ERVK 1 511 0 1061 62 0 0 chr13 21148648 21148778 -98596120 + HERVK9 LTR ERVK 1 130 -5786 697 255 60 39 chr13 21148790 21149166 -98595732 + MER4C LTR ERV1 141 465 0 641 167 35 21 chr13 21149251 21149395 -98595503 + MER4C-int LTR ERV1 109 254 -6344 226 213 21 0 chr13 21149580 21149627 -98595271 + LTR49 LTR ERV1 261 308 -287 544 174 84 58 chr13 21149649 21149804 -98595094 + MER4C-int LTR ERV1 995 1153 -5178 2655 223 30 15 chr13 21150075 21151936 -98592962 + L1MB8 LINE L1 2865 6169 -9 186 43 0 0 chr13 21151944 21151967 -98592931 + (CA)n Simple_repeat Simple_repeat 1 23 0 3188 271 32 36 chr13 21151975 21153066 -98591832 - MER110-int LTR ERV1 -1547 3100 2014 2199 189 62 77 chr13 21153082 21153184 -98591714 - MLT1A1-int LTR MaLR -1180 555 453 2434 100 3 0 chr13 21153184 21153494 -98591404 + AluSx SINE Alu 1 311 -1 2199 189 62 77 chr13 21153494 21153953 -98590945 - MLT1A1-int LTR MaLR -1282 453 2 979 188 139 102 chr13 21153954 21154306 -98590592 - MLT1A1 LTR MaLR 0 365 1 2465 94 0 0 chr13 21154899 21155208 -98589690 - AluSq SINE Alu -4 309 1 423 333 76 54 chr13 21155272 21155452 -98589446 - MER110-int LTR ERV1 -4121 526 351 1657 114 165 4 chr13 21155452 21155707 -98589191 + AluSx SINE Alu 1 296 -16 423 333 76 54 chr13 21155707 21155817 -98589081 - MER110-int LTR ERV1 -4296 351 245 2327 94 0 3 chr13 21155817 21156114 -98588784 - AluSc SINE Alu -13 296 1 423 333 76 54 chr13 21156114 21156230 -98588668 - MER110-int LTR ERV1 -4402 245 110 252 0 0 0 chr13 21156842 21156870 -98588028 + (A)n Simple_repeat Simple_repeat 1 28 0 722 161 8 16 chr13 21156885 21157009 -98587889 - THE1C LTR MaLR -252 123 1 7365 223 77 17 chr13 21157010 21159977 -98584921 + L1ME1 LINE L1 2894 6059 -107 2420 94 0 0 chr13 21159977 21160285 -98584613 - AluSg SINE Alu -2 308 1 7365 223 77 17 chr13 21160285 21160394 -98584504 + L1ME1 LINE L1 6059 6160 -6 230 301 96 19 chr13 21160411 21160567 -98584331 + L1M2 LINE L1 2290 2457 -4392 22 0 0 0 chr13 21160635 21160657 -98584241 + AT_rich Low_complexity Low_complexity 1 22 0 209 286 0 0 chr13 21161874 21161923 -98582975 + (TG)n Simple_repeat Simple_repeat 1 49 0 5530 147 43 11 chr13 21164452 21164929 -98579969 - L1MA5A LINE L1 -1 6296 5836 402 57 0 0 chr13 21164929 21164982 -98579916 + (TG)n Simple_repeat Simple_repeat 2 54 0 5530 147 43 11 chr13 21164982 21165558 -98579340 - L1MA5A LINE L1 -461 5836 5209 1367 172 4 4 chr13 21165543 21165804 -98579094 + L1MA5A LINE L1 4963 5223 -923 * 812 282 176 33 chr13 21166094 21167533 -98577365 + L1ME2 LINE L1 3953 5593 -743 185 255 43 0 chr13 21167559 21167606 -98577292 - L2 LINE L2 -16 3297 3249 306 270 40 32 chr13 21167756 21167882 -98577016 + L1ME2 LINE L1 5758 5884 -280 5452 54 4 16 chr13 21168224 21168581 -98576317 + L1PA7 LINE L1 5472 5819 -335 2432 91 0 0 chr13 21168581 21168888 -98576010 + AluY SINE Alu 1 307 -4 5452 54 4 16 chr13 21168888 21169216 -98575682 + L1PA7 LINE L1 5819 6149 -5 21 0 0 0 chr13 21169216 21169237 -98575661 + AT_rich Low_complexity Low_complexity 1 21 0 482 281 104 58 chr13 21169330 21169457 -98575441 + L1MC3 LINE L1 4027 4147 -1999 1603 189 3 22 chr13 21169457 21169770 -98575128 + AluJo SINE Alu 1 307 -5 482 281 104 58 chr13 21169770 21170247 -98574651 + L1MC3 LINE L1 4147 4659 -1487 238 360 61 19 chr13 21170520 21170734 -98574164 + L1MC3 LINE L1 5376 5598 -523 269 289 30 30 chr13 21170942 21171077 -98573821 + L1MC3 LINE L1 5800 5934 -1874 3736 157 36 22 chr13 21172558 21173246 -98571652 - ERVL-B2 LTR ERVL -1634 4130 3433 6539 155 35 21 chr13 21173253 21173811 -98571087 - ERVL-B2 LTR ERVL -2909 2855 2307 1542 141 131 20 chr13 21173811 21174116 -98570782 + MER44D DNA MER2_type 1 609 0 6539 155 35 21 chr13 21174116 21174663 -98570235 - ERVL-B2 LTR ERVL -3457 2307 1734 866 213 0 0 chr13 21174663 21174813 -98570085 - FRAM SINE Alu -25 151 2 7974 199 68 10 chr13 21174813 21176468 -98568430 - ERVL-B2 LTR ERVL -4013 1751 2 2288 181 138 7 chr13 21176473 21176511 -98568387 - MLT2B2 LTR ERVL -8 507 475 210 91 0 0 chr13 21176511 21176544 -98568354 + (TA)n Simple_repeat Simple_repeat 2 34 0 2288 181 138 7 chr13 21176544 21176953 -98567945 - MLT2B2 LTR ERVL -40 475 1 270 0 0 0 chr13 21178906 21178936 -98565962 + (TG)n Simple_repeat Simple_repeat 2 31 0 1418 162 53 43 chr13 21179351 21179510 -98565388 - MLT1A2 LTR MaLR -56 318 153 225 0 0 0 chr13 21179510 21179535 -98565363 + (GA)n Simple_repeat Simple_repeat 1 25 0 1418 162 53 43 chr13 21179535 21179677 -98565221 - MLT1A2 LTR MaLR -221 153 14 952 117 5 126 chr13 21179852 21179888 -98565010 + MER53 DNA DNA 2 41 -148 2089 126 0 0 chr13 21179888 21180174 -98564724 + AluSq SINE Alu 1 286 -27 952 117 5 126 chr13 21180174 21180351 -98564547 + MER53 DNA DNA 41 189 0 391 99 10 59 chr13 21180457 21180558 -98564340 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 180 0 0 0 chr13 21181435 21181455 -98563443 + (TTGTG)n Simple_repeat Simple_repeat 3 22 0 6291 219 46 13 chr13 21181605 21182540 -98562358 + L1MC3 LINE L1 6223 7229 -556 2365 146 36 31 chr13 21182540 21182986 -98561912 - MER83 LTR ERV1 0 448 1 6291 219 46 13 chr13 21182986 21183563 -98561335 + L1MC3 LINE L1 7229 7785 0 233 121 0 0 chr13 21184658 21184691 -98560207 + MER94 DNA DNA 8 40 -94 389 217 58 50 chr13 21184709 21184829 -98560069 - L1MC4 LINE L1 0 8042 7922 254 313 22 37 chr13 21184836 21184970 -98559928 - L1MC4 LINE L1 -218 7824 7693 753 223 0 0 chr13 21184990 21185129 -98559769 - AluJb SINE Alu -37 275 137 1338 182 88 61 chr13 21185213 21185441 -98559457 - MER66B LTR ERV1 0 486 243 1979 129 0 62 chr13 21185441 21185750 -98559148 - AluSx SINE Alu -18 294 5 1338 182 88 61 chr13 21185750 21185883 -98559015 - MER66B LTR ERV1 -243 243 115 1168 178 50 0 chr13 21185897 21186099 -98558799 + MSTB LTR MaLR 215 426 0 241 235 59 10 chr13 21186749 21186851 -98558047 + MLT1D LTR MaLR 264 370 -135 191 254 14 28 chr13 21187951 21188022 -98556876 + L2 LINE L2 3126 3195 -77 1824 113 88 52 chr13 21189449 21189811 -98555087 + THE1C LTR MaLR 1 375 0 188 209 0 0 chr13 21194009 21194052 -98550846 + MIR SINE MIR 100 142 -120 280 209 0 75 chr13 21194087 21194154 -98550744 - L1MB7 LINE L1 -61 6123 6062 779 248 46 32 chr13 21194266 21194548 -98550350 - L1MB7 LINE L1 -80 6104 5819 403 173 22 32 chr13 21194582 21194683 -98550215 - L1MB7 LINE L1 -586 5585 5485 1131 98 0 0 chr13 21194851 21195014 -98549884 + (TTCC)n Simple_repeat Simple_repeat 3 165 0 718 209 4 8 chr13 21195029 21195265 -98549633 + CT-rich Low_complexity Low_complexity 1 235 0 815 190 29 0 chr13 21195268 21195442 -98549456 - L1MB7 LINE L1 -707 5467 5289 384 220 40 0 chr13 21196360 21196460 -98548438 - MIR SINE MIR -79 183 80 1102 264 34 3 chr13 21196505 21196854 -98548044 - MLT1A1 LTR MaLR -2 363 4 333 174 0 14 chr13 21197809 21197878 -98547020 + MLT1E1 LTR MaLR 185 252 -402 777 248 40 56 chr13 21198791 21198903 -98545995 + MLT1B LTR MaLR 93 205 -185 267 31 0 0 chr13 21198903 21198935 -98545963 + (CA)n Simple_repeat Simple_repeat 1 32 0 777 248 40 56 chr13 21198935 21199125 -98545773 + MLT1B LTR MaLR 205 390 0 328 302 80 31 chr13 21199125 21199491 -98545407 - L1ME LINE L1 -484 5637 5258 2058 117 6 46 chr13 21199534 21199860 -98545038 - AluSq SINE Alu 0 313 1 351 216 86 73 chr13 21199996 21200194 -98544704 - L1MB7 LINE L1 -1057 5089 4886 420 256 0 0 chr13 21200530 21200620 -98544278 - LTR33A LTR ERVL 0 523 434 321 267 13 0 chr13 21200829 21200904 -98543994 - LTR33 LTR ERVL -343 178 103 229 233 78 78 chr13 21201192 21201282 -98543616 - L1MB7 LINE L1 -1959 4187 4098 499 297 112 51 chr13 21201458 21201906 -98542992 - REP3 LTR ERV -87 475 1 482 252 109 46 chr13 21201932 21202234 -98542664 - L1MB7 LINE L1 -2153 3993 3673 7799 211 43 33 chr13 21202392 21204565 -98540333 - L1MB8 LINE L1 -6 6408 4191 2050 146 0 0 chr13 21204565 21204859 -98540039 - AluSg SINE Alu -16 294 1 7799 211 43 33 chr13 21204859 21205735 -98539163 - L1MB8 LINE L1 -2223 4191 3325 1038 276 39 3 chr13 21205891 21206228 -98538670 - L1MB8 LINE L1 -4536 1848 1500 2351 171 29 113 chr13 21206238 21206922 -98537976 + MER4E LTR ERV1 18 644 -135 2061 127 146 6 chr13 21206922 21207284 -98537614 - MER9 LTR ERVK 0 511 99 725 185 7 34 chr13 21207293 21207439 -98537459 + MER4D LTR ERV1 762 903 0 1464 258 33 0 chr13 21207440 21207859 -98537039 - L1MB8 LINE L1 -4906 1478 1046 1633 170 7 0 chr13 21207863 21208133 -98536765 + L1MC3 LINE L1 6684 6955 -830 1446 96 4 123 chr13 21208153 21208413 -98536485 + AluSc SINE Alu 73 301 -8 248 139 28 28 chr13 21208432 21208504 -98536394 + (TA)n Simple_repeat Simple_repeat 2 73 0 3593 208 37 46 chr13 21208921 21209284 -98535614 + L1M3 LINE L1 4327 4692 -1491 2353 107 0 0 chr13 21209284 21209584 -98535314 - AluSg SINE Alu -10 300 1 3593 208 37 46 chr13 21209584 21210492 -98534406 + L1M3 LINE L1 4692 5592 -591 523 158 47 0 chr13 21211265 21211375 -98533523 + MER61E LTR ERV1 1 118 -484 236 175 175 0 chr13 21211542 21211599 -98533299 + MER51A LTR ERV1 209 275 -359 * 1144 172 111 14 chr13 21211576 21211930 -98532968 + LTR25 LTR ERV1 397 569 0 328 324 87 18 chr13 21211958 21212177 -98532721 + MIR SINE MIR 13 246 -16 477 0 0 0 chr13 21212467 21212520 -98532378 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 248 204 21 43 chr13 21213643 21213736 -98531162 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 21213881 21213955 -98530943 + AT_rich Low_complexity Low_complexity 1 74 0 1132 284 108 39 chr13 21213975 21214346 -98530552 + L1M4 LINE L1 2340 2684 -3462 1971 138 0 10 chr13 21214346 21214643 -98530255 - AluSx SINE Alu -18 294 1 1132 284 108 39 chr13 21214643 21215405 -98529493 + L1M4 LINE L1 2684 3583 -2563 2144 112 20 0 chr13 21215405 21215699 -98529199 - AluSx SINE Alu -12 300 1 1132 284 108 39 chr13 21215699 21215910 -98528988 + L1M4 LINE L1 3583 3778 -2368 371 220 144 3 chr13 21216973 21217088 -98527810 + MER97a DNA MER1_type? 44 169 -725 203 253 70 70 chr13 21217148 21217239 -98527659 - MIR SINE MIR -99 163 70 2273 157 49 53 chr13 21217239 21217691 -98527207 + LTR47A LTR ERVL 1 450 -2 203 253 70 70 chr13 21217691 21217757 -98527141 - MIR SINE MIR -191 71 6 1492 216 113 30 chr13 21218754 21219180 -98525718 - MLT1C LTR MaLR 0 467 7 23 33 0 0 chr13 21219689 21219719 -98525179 + AT_rich Low_complexity Low_complexity 1 30 0 2251 113 7 3 chr13 21219912 21220222 -98524676 - AluSx SINE Alu -1 311 1 1317 169 42 122 chr13 21220574 21220958 -98523940 + MLT1A1 LTR MaLR 1 353 -12 2175 103 0 34 chr13 21221606 21221927 -98522971 + AluSg SINE Alu 1 310 0 27 0 0 0 chr13 21221940 21221967 -98522931 + AT_rich Low_complexity Low_complexity 1 27 0 196 225 0 0 chr13 21222237 21222277 -98522621 - MIR SINE MIR -26 236 197 381 203 16 23 chr13 21222444 21222572 -98522326 + CT-rich Low_complexity Low_complexity 5 131 0 2612 68 0 0 chr13 21222600 21222911 -98521987 - AluY SINE Alu 0 311 1 1041 303 33 23 chr13 21222911 21223764 -98521134 - L1M4c LINE L1 -3926 2746 1747 2863 219 18 58 chr13 21223776 21223839 -98521059 - L1M4c LINE L1 -5007 1535 1471 2054 134 23 0 chr13 21223839 21224138 -98520760 - AluSx SINE Alu -6 306 1 2863 219 18 58 chr13 21224138 21224973 -98519925 - L1M4c LINE L1 -5071 1471 673 2299 74 3 10 chr13 21224975 21225274 -98519624 + AluY SINE Alu 1 297 -14 391 279 10 10 chr13 21225376 21225480 -98519418 - L1M4c LINE L1 -5891 651 548 195 129 0 0 chr13 21225480 21225511 -98519387 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 2498 56 0 31 chr13 21225555 21225875 -98519023 - AluY SINE Alu -1 310 1 2269 92 3 0 chr13 21225885 21226218 -98518680 - AluSp SINE Alu 0 334 1 244 184 0 0 chr13 21227023 21227061 -98517837 + tRNA-Arg-AGA tRNA tRNA 1 38 -38 258 271 49 95 chr13 21227063 21227591 -98517307 + L1ME4a LINE L1 5609 6112 -9 2425 55 41 0 chr13 21228393 21228685 -98516213 + AluY SINE Alu 1 304 -7 275 270 146 30 chr13 21228738 21228971 -98515927 - LTR48 LTR ERV1 -6 781 522 324 70 0 0 chr13 21229123 21229166 -98515732 + (TA)n Simple_repeat Simple_repeat 2 44 0 311 280 59 8 chr13 21229285 21229403 -98515495 - LTR48B LTR ERV1 -380 264 141 299 231 15 0 chr13 21229429 21229494 -98515404 - MER34 LTR ERV1 -452 90 25 181 0 69 0 chr13 21229541 21229570 -98515328 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 2451 152 52 2 chr13 21230632 21231040 -98513858 - MSTA LTR MaLR 0 428 1 297 188 38 75 chr13 21231261 21231341 -98513557 - MER2 DNA MER2_type -1 344 268 1211 149 45 0 chr13 21231367 21231568 -98513330 - MER2 DNA MER2_type -135 210 1 241 262 60 0 chr13 21232281 21232365 -98512533 - MIR SINE MIR -93 169 81 1039 134 120 49 chr13 21233260 21233544 -98511354 - L1MA8 LINE L1 -5 6286 5983 234 244 37 73 chr13 21233660 21233703 -98511195 + MER57B LTR ERV1 312 351 -83 1329 244 103 44 chr13 21233703 21234157 -98510741 - LTR26E LTR ERV1 0 608 123 2294 95 7 0 chr13 21234164 21234470 -98510428 + AluY SINE Alu 1 308 -3 181 204 91 0 chr13 21235293 21235337 -98509561 - L2 LINE L2 -15 3298 3251 * 205 296 52 87 chr13 21235303 21235359 -98509539 - MIR SINE MIR -23 239 183 1755 153 7 23 chr13 21235359 21235660 -98509238 + AluSx SINE Alu 1 296 -16 205 296 52 87 chr13 21235660 21235775 -98509123 - MIR SINE MIR -79 183 74 1613 195 118 8 chr13 21236006 21236370 -98508528 + MLT2B3 LTR ERVL 4 407 -147 5493 52 33 13 chr13 21236379 21236997 -98507901 + MER11D LTR ERVK 1 636 -261 2928 19 0 0 chr13 21236997 21237314 -98507584 + AluYb8 SINE Alu 1 317 -1 5493 52 33 13 chr13 21237314 21237383 -98507515 + MER11D LTR ERVK 636 702 -195 1989 140 3 22 chr13 21240773 21241088 -98503810 + AluSc SINE Alu 1 309 0 366 313 133 17 chr13 21241272 21241505 -98503393 - L1MC/D LINE L1 -521 5641 5383 2410 122 49 35 chr13 21241855 21242281 -98502617 - MSTB1 LTR MaLR 0 432 1 22 56 0 0 chr13 21243064 21243100 -98501798 + AT_rich Low_complexity Low_complexity 1 36 0 2386 95 0 7 chr13 21243183 21243489 -98501409 + AluSx SINE Alu 3 306 -6 21 0 0 0 chr13 21244202 21244223 -98500675 + AT_rich Low_complexity Low_complexity 1 21 0 2169 137 116 18 chr13 21244510 21244898 -98500000 - MSTA LTR MaLR -2 426 1 226 318 0 18 chr13 21246037 21246147 -98498751 + L1MDa LINE L1 1267 1374 -5166 273 196 21 10 chr13 21246177 21246274 -98498624 + (TA)n Simple_repeat Simple_repeat 1 98 0 381 305 62 22 chr13 21246289 21246565 -98498333 + L1MDa LINE L1 1451 1782 -4885 2649 196 112 6 chr13 21246629 21247288 -98497610 - L1MB7 LINE L1 -9 6175 5447 28 0 0 0 chr13 21247341 21247369 -98497529 + AT_rich Low_complexity Low_complexity 1 28 0 2128 134 0 0 chr13 21247530 21247829 -98497069 + AluSx SINE Alu 2 300 -12 715 135 28 17 chr13 21248201 21248379 -98496519 + (TG)n Simple_repeat Simple_repeat 1 180 0 2377 75 3 3 chr13 21249475 21249782 -98495116 - AluY SINE Alu -4 307 1 1128 141 33 38 chr13 21250469 21250682 -98494216 + MSTC LTR MaLR 1 212 -216 22 56 0 0 chr13 21251392 21251428 -98493470 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 21251614 21251643 -98493255 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr13 21251958 21252004 -98492894 + AT_rich Low_complexity Low_complexity 1 46 0 532 301 117 8 chr13 21252273 21252522 -98492376 + L1MEc LINE L1 47 322 -6074 369 277 19 25 chr13 21252542 21252701 -98492197 + L1MEc LINE L1 362 519 -5877 3390 61 16 0 chr13 21253087 21253511 -98491387 - MER11B LTR ERVK -805 431 1 9654 190 30 8 chr13 21253513 21255519 -98489379 + L1PA15 LINE L1 3054 5149 -1016 2253 114 140 8 chr13 21255519 21255897 -98489001 + MSTA LTR MaLR 1 428 0 9654 190 30 8 chr13 21255897 21256933 -98487965 + L1PA15 LINE L1 5149 6161 -4 2168 182 26 5 chr13 21256929 21257357 -98487541 + L1MC3 LINE L1 5461 5897 -1888 * 1319 341 51 58 chr13 21257381 21258805 -98486093 + ERVL LTR ERVL 3915 5328 -436 2343 71 7 14 chr13 21259110 21259404 -98485494 - AluY SINE Alu -15 296 5 744 318 87 7 chr13 21259516 21259802 -98485096 + LTR16A1 LTR ERVL 148 456 -1 3819 93 2 8 chr13 21260115 21260629 -98484269 - MER9 LTR ERVK 0 511 1 2416 99 5 4 chr13 21260629 21260966 -98483932 - HERVK9 LTR ERVK 0 5916 4922 7865 96 4 6 chr13 21261007 21262063 -98482835 - HERVK9 LTR ERVK -282 5634 4581 1829 64 0 9 chr13 21262061 21262294 -98482604 - HERVK9 LTR ERVK -1975 3941 3711 * 11451 60 0 1 chr13 21262294 21263665 -98481233 - HERVK9 LTR ERVK -3130 2786 1417 257 310 78 0 chr13 21264247 21264363 -98480535 - MIR SINE MIR -67 195 71 566 285 109 0 chr13 21264437 21264602 -98480296 - MER5A DNA MER1_type 0 189 7 1795 142 43 13 chr13 21264759 21265061 -98479837 - AluSx SINE Alu -1 311 1 1215 184 49 0 chr13 21266773 21267017 -98477881 - L1MA9 LINE L1 -38 6274 6019 2060 156 56 67 chr13 21267388 21267618 -98477280 - MSTB LTR MaLR 0 426 202 2337 96 0 3 chr13 21267618 21267919 -98476979 - AluSg SINE Alu -10 300 1 2060 156 56 67 chr13 21267919 21268119 -98476779 - MSTB LTR MaLR -224 202 1 3021 63 7 85 chr13 21269197 21269657 -98475241 + HERVK9 LTR ERVK 145 568 -5348 2055 90 0 14 chr13 21269658 21269947 -98474951 + HERVK9 LTR ERVK 1113 1397 -4519 1312 160 9 5 chr13 21272725 21272937 -98471961 - pTR5 LTR ERV1 -2045 393 181 253 314 48 0 chr13 21272939 21273044 -98471854 - LTR30 LTR ERV1 -69 653 544 4011 176 81 38 chr13 21273048 21274015 -98470883 - pTR5 LTR ERV1 -417 2021 740 186 145 0 53 chr13 21277305 21277381 -98467517 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 204 245 0 0 chr13 21278860 21278909 -98465989 + T-rich Low_complexity Low_complexity 1 49 0 210 200 40 0 chr13 21279505 21279555 -98465343 + L2 LINE L2 3221 3272 0 249 301 126 10 chr13 21279738 21279841 -98465057 - L1MC4 LINE L1 -1 8041 7927 561 326 100 41 chr13 21280823 21281049 -98463849 - L1M4 LINE L1 -838 5308 5097 2131 120 40 0 chr13 21281049 21281349 -98463549 + AluSx SINE Alu 1 312 0 561 326 100 41 chr13 21281349 21282283 -98462615 - L1M4 LINE L1 -1049 5097 4080 1470 77 15 5 chr13 21482528 21482723 -98262175 - AluY SINE Alu -114 197 1 491 266 85 53 chr13 21482737 21483056 -98261842 + L1ME4a LINE L1 5548 5876 -245 2285 80 3 0 chr13 21483066 21483354 -98261544 + AluY SINE Alu 19 307 -4 2191 101 11 0 chr13 21483801 21484088 -98260810 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr13 21485477 21485499 -98259399 + AT_rich Low_complexity Low_complexity 1 22 0 212 189 0 0 chr13 21485773 21485810 -98259088 + T-rich Low_complexity Low_complexity 1 37 0 303 239 11 22 chr13 21486995 21487087 -98257811 + G-rich Low_complexity Low_complexity 6 96 0 24 77 0 0 chr13 21487817 21487869 -98257029 + AT_rich Low_complexity Low_complexity 1 52 0 796 263 134 88 chr13 21488014 21488538 -98256360 - L1ME3A LINE L1 -4 6166 5619 919 199 42 48 chr13 21488611 21488898 -98256000 - MLT1A1 LTR MaLR -2 363 1 2240 104 7 3 chr13 21489534 21489833 -98255065 - AluSq SINE Alu -13 300 1 254 269 15 0 chr13 21489910 21489977 -98254921 + L2 LINE L2 2943 3010 -262 2256 86 0 17 chr13 21490083 21490385 -98254513 - AluY SINE Alu -14 297 1 227 73 49 0 chr13 21490436 21490477 -98254421 + (CTAAT)n Simple_repeat Simple_repeat 4 46 0 7651 133 91 93 chr13 21492594 21494295 -98250603 - pTR5 LTR ERV1 0 2438 743 2087 130 0 0 chr13 21495241 21495533 -98249365 - AluSg SINE Alu -18 292 1 757 139 0 36 chr13 21495853 21495990 -98248908 + FLAM_C SINE Alu 12 143 0 2259 180 49 14 chr13 21496309 21496754 -98248144 - LOR1b LTR ERV1 0 461 1 1079 76 0 0 chr13 21497372 21497504 -98247394 + AluY SINE Alu 1 132 -179 2183 79 58 0 chr13 21497507 21497798 -98247100 + AluY SINE Alu 1 308 -3 2284 75 37 3 chr13 21498021 21498316 -98246582 + AluY SINE Alu 1 305 -6 207 0 0 0 chr13 21498334 21498357 -98246541 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 311 0 0 25 chr13 21499252 21499292 -98245606 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2073 48 48 0 chr13 21499297 21499546 -98245352 + AluY SINE Alu 2 262 -49 262 306 57 38 chr13 21499951 21500286 -98244612 - L1MDa LINE L1 -749 2152 1803 189 309 75 21 chr13 21500493 21500587 -98244311 - MIR SINE MIR -109 153 55 1974 218 81 31 chr13 21500761 21502080 -98242818 - L1ME2 LINE L1 -55 6109 4589 341 302 168 22 chr13 21502096 21502645 -98242253 + L1ME LINE L1 4572 5200 -946 27 73 0 0 chr13 21502669 21502724 -98242174 + AT_rich Low_complexity Low_complexity 1 55 0 366 260 97 32 chr13 21502822 21502976 -98241922 + MLT1G1 LTR MaLR 16 179 -416 695 276 144 29 chr13 21502976 21503386 -98241512 + L1ME LINE L1 5338 5794 -368 248 264 14 114 chr13 21503419 21503559 -98241339 - MIR SINE MIR -18 244 119 182 242 0 0 chr13 21504020 21504053 -98240845 + L2 LINE L2 3265 3297 -16 548 286 161 43 chr13 21504411 21504874 -98240024 - L2 LINE L2 -49 3264 2743 1550 206 37 42 chr13 21504882 21505261 -98239637 + MLT1B LTR MaLR 3 379 -11 1780 285 160 28 chr13 21505285 21506216 -98238682 - L2 LINE L2 -590 2724 1671 319 289 252 7 chr13 21506370 21506549 -98238349 + MIR SINE MIR 37 256 -6 213 211 14 28 chr13 21507185 21507256 -98237642 + (TA)n Simple_repeat Simple_repeat 1 70 0 2460 81 0 3 chr13 21508103 21508410 -98236488 - AluSc SINE Alu -3 306 1 22 35 0 0 chr13 21508425 21508454 -98236444 + AT_rich Low_complexity Low_complexity 1 29 0 228 182 23 0 chr13 21508646 21508690 -98236208 - L2 LINE L2 -1 3312 3268 2448 88 0 3 chr13 21509054 21509360 -98235538 - AluSp SINE Alu -8 305 1 2464 226 86 42 chr13 21509364 21510059 -98234839 - MER21B LTR ERV1 -137 726 1 255 219 154 73 chr13 21510085 21510208 -98234690 + L2 LINE L2 3137 3269 -3 2448 57 0 7 chr13 21510341 21510638 -98234260 - AluY SINE Alu -16 295 1 23 33 0 0 chr13 21511179 21511209 -98233689 + AT_rich Low_complexity Low_complexity 1 30 0 2574 99 14 0 chr13 21511297 21511641 -98233257 + L1PB1 LINE L1 5801 6149 -2 191 358 117 8 chr13 21512964 21513084 -98231814 - MIR SINE MIR -60 148 16 424 211 100 11 chr13 21513507 21513597 -98231301 - LTR12 LTR ERV1 -2 712 615 1648 142 53 114 chr13 21513599 21514030 -98230868 - LTR12 LTR ERV1 -309 405 1 306 209 20 37 chr13 21515292 21515377 -98229521 + MIR SINE MIR 34 121 -87 28 0 0 0 chr13 21515867 21515895 -98229003 + AT_rich Low_complexity Low_complexity 1 28 0 182 189 108 68 chr13 21516489 21516563 -98228335 + L2 LINE L2 2676 2752 -562 326 329 123 58 chr13 21516770 21517095 -98227803 + L2 LINE L2 2921 3266 -6 204 67 0 0 chr13 21517376 21517406 -98227492 + (TG)n Simple_repeat Simple_repeat 2 31 0 2105 130 10 0 chr13 21517571 21517871 -98227027 + AluSx SINE Alu 1 303 -9 2166 130 3 0 chr13 21517879 21518179 -98226719 + AluSx SINE Alu 1 301 -11 2325 101 0 0 chr13 21518187 21518484 -98226414 + AluSq SINE Alu 1 297 -16 2248 97 7 10 chr13 21518485 21518794 -98226104 + AluSc SINE Alu 2 309 0 2087 138 16 0 chr13 21521738 21522043 -98222855 - AluSg SINE Alu 0 310 1 2114 88 53 3 chr13 21522163 21522446 -98222452 - AluY SINE Alu -14 297 1 337 299 76 7 chr13 21522891 21523035 -98221863 - L2 LINE L2 -61 3252 3099 1259 271 46 51 chr13 21525020 21525382 -98219516 + L2 LINE L2 2427 2789 -524 1696 154 3 74 chr13 21525382 21525706 -98219192 - AluJo SINE Alu -9 303 3 1259 271 46 51 chr13 21525706 21526155 -98218743 + L2 LINE L2 2789 3232 -81 1091 220 26 111 chr13 21526199 21526585 -98218313 - MLT1A1 LTR MaLR 0 365 13 2274 60 3 3 chr13 21527077 21527382 -98217516 - AluY SINE Alu 0 305 1 262 277 9 18 chr13 21527998 21528110 -98216788 + GA-rich Low_complexity Low_complexity 2 112 0 499 137 0 0 chr13 21528379 21528452 -98216446 - AluSx SINE Alu -16 293 221 1435 144 14 0 chr13 21528532 21528747 -98216151 - AluSx SINE Alu -94 218 1 28 48 0 0 chr13 21528754 21528796 -98216102 + AT_rich Low_complexity Low_complexity 1 42 0 229 361 14 0 chr13 21529051 21529123 -98215775 + MIR SINE MIR 39 111 -97 2144 117 0 32 chr13 21530264 21530580 -98214318 - AluSx SINE Alu -6 306 1 362 333 74 0 chr13 21530771 21530906 -98213992 + MIR SINE MIR 21 165 -97 187 259 103 0 chr13 21531000 21531058 -98213840 + MIR SINE MIR 187 250 -12 2729 36 0 0 chr13 21531541 21531850 -98213048 + AluY SINE Alu 1 309 -2 518 316 111 21 chr13 21532420 21532981 -98211917 - L2 LINE L2 -54 3259 2636 304 314 98 20 chr13 21533068 21533170 -98211728 - L2 LINE L2 -20 3252 3143 192 40 0 0 chr13 21534206 21534231 -98210667 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 59 0 0 chr13 21534254 21534288 -98210610 + (TG)n Simple_repeat Simple_repeat 2 35 0 588 333 74 20 chr13 21534302 21534693 -98210205 + L1M4 LINE L1 2701 3112 -3034 763 276 71 4 chr13 21534712 21534937 -98209961 + MIR SINE MIR 20 259 -3 192 77 0 0 chr13 21534976 21535002 -98209896 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 2072 65 4 11 chr13 21535004 21535267 -98209631 - AluY SINE Alu -17 294 34 1897 114 4 0 chr13 21535405 21535668 -98209230 - AluY SINE Alu -47 264 1 531 280 71 21 chr13 21535714 21536039 -98208859 + L1M4 LINE L1 4634 4974 -1172 664 298 53 26 chr13 21536039 21536267 -98208631 - L2 LINE L2 -1385 1929 1696 308 277 53 0 chr13 21536310 21536404 -98208494 - L2 LINE L2 -1605 1709 1611 987 286 121 54 chr13 21536404 21536809 -98208089 - L2 LINE L2 -2636 678 247 215 294 0 0 chr13 21536819 21536870 -98208028 - L2 LINE L2 -3186 128 78 561 301 75 38 chr13 21537369 21537767 -98207131 - MLT1J2 LTR MaLR -37 413 1 2258 68 57 0 chr13 21537947 21538227 -98206671 + AluY SINE Alu 1 296 -15 3410 141 30 7 chr13 21538424 21538998 -98205900 - L1PA15 LINE L1 -1 6164 5578 21 71 0 0 chr13 21539182 21539224 -98205674 + AT_rich Low_complexity Low_complexity 1 42 0 1067 259 94 2 chr13 21539280 21539778 -98205120 + MER114 LTR ERV 22 565 -83 233 221 143 13 chr13 21539806 21539883 -98205015 - MIR SINE MIR -98 164 78 390 101 101 0 chr13 21539955 21540024 -98204874 - LTR12 LTR ERV1 -288 426 351 242 155 14 99 chr13 21540026 21540097 -98204801 - LTR30 LTR ERV1 -108 614 550 1048 116 233 5 chr13 21540097 21540312 -98204586 - LTR12 LTR ERV1 -450 264 1 233 398 0 0 chr13 21540836 21540949 -98203949 - MIR SINE MIR -66 142 30 2057 148 43 6 chr13 21541401 21541753 -98203145 - MLT1A1 LTR MaLR 0 365 1 1469 114 18 35 chr13 21542112 21542339 -98202559 - AluSg/x SINE Alu -11 299 77 1917 243 90 29 chr13 21543334 21543509 -98201389 - L1ME2 LINE L1 -16 6148 5985 2184 113 13 0 chr13 21543509 21543810 -98201088 - AluSq SINE Alu -8 305 1 1917 243 90 29 chr13 21543810 21544465 -98200433 - L1ME2 LINE L1 -179 5985 5254 632 137 73 8 chr13 21544484 21544608 -98200290 - MLT1D LTR MaLR -5 500 369 2246 114 3 0 chr13 21544619 21544925 -98199973 - AluSx SINE Alu -5 307 1 298 174 23 12 chr13 21544934 21545020 -98199878 - L1ME2 LINE L1 -981 5165 5079 1483 267 69 6 chr13 21545056 21545719 -98199179 - L1M4 LINE L1 -3191 2955 2251 2216 75 0 3 chr13 21546004 21546339 -98198559 - AluY SINE Alu 0 334 1 2255 57 54 3 chr13 21546852 21547148 -98197750 + AluY SINE Alu 1 311 0 2480 90 0 0 chr13 21547416 21547717 -98197181 + AluSq SINE Alu 1 301 -12 2168 133 0 0 chr13 21549418 21549719 -98195179 - AluSx SINE Alu -11 301 1 785 198 6 18 chr13 21549805 21549972 -98194926 - MER20 DNA MER1_type -54 165 1 949 249 105 32 chr13 21550080 21550707 -98194191 - Charlie2a DNA MER1_type -1174 1688 1016 247 376 38 55 chr13 21550747 21550935 -98193963 - L2 LINE L2 -445 2869 2686 2597 33 0 3 chr13 21550935 21551234 -98193664 + AluY SINE Alu 1 298 -13 247 376 38 55 chr13 21551234 21551335 -98193563 - L2 LINE L2 -628 2686 2585 262 303 111 49 chr13 21551339 21551652 -98193246 - L2 LINE L2 -1001 2313 1974 3734 122 30 38 chr13 21551652 21551946 -98192952 + MER39B LTR ERV1 1 296 -357 2282 73 0 23 chr13 21551946 21552247 -98192651 + AluY SINE Alu 1 294 -17 3734 122 30 38 chr13 21552247 21552610 -98192288 + MER39B LTR ERV1 296 653 0 262 303 111 49 chr13 21552610 21552646 -98192252 - L2 LINE L2 -1340 1974 1942 2391 80 0 10 chr13 21552755 21553069 -98191829 - AluY SINE Alu 0 311 1 328 211 144 39 chr13 21553839 21553943 -98190955 - MIR3 SINE MIR -31 177 63 546 199 199 50 chr13 21554516 21554737 -98190161 - MIR SINE MIR -5 257 4 230 310 129 9 chr13 21555226 21555342 -98189556 - L2 LINE L2 -1364 1950 1821 2189 126 0 3 chr13 21555900 21556193 -98188705 - AluSx SINE Alu -20 292 1 2203 101 0 10 chr13 21556989 21557287 -98187611 - AluSx SINE Alu -17 295 1 263 259 145 48 chr13 21557608 21557660 -98187238 - MIR SINE MIR 0 262 216 2265 103 0 3 chr13 21557660 21557960 -98186938 - AluSx SINE Alu -13 299 1 263 259 145 48 chr13 21557960 21558073 -98186825 - MIR SINE MIR -46 216 81 299 313 46 23 chr13 21558160 21558291 -98186607 + L2 LINE L2 1459 1592 -1722 331 328 62 6 chr13 21558299 21558476 -98186422 + L2 LINE L2 1791 1977 -1337 2056 129 35 30 chr13 21558531 21558903 -98185995 + THE1C LTR MaLR 2 375 0 240 111 0 0 chr13 21559138 21559174 -98185724 + (A)n Simple_repeat Simple_repeat 1 36 0 2620 42 3 3 chr13 21560152 21560463 -98184435 - AluY SINE Alu 0 311 1 2686 150 65 7 chr13 21560722 21561368 -98183530 - L1MC/D LINE L1 -425 5817 5147 2349 90 3 3 chr13 21561466 21561778 -98183120 - AluSp SINE Alu -1 312 1 366 260 65 88 chr13 21561862 21561970 -98182928 - HAL1b LINE L1 -239 1109 1000 2277 84 3 13 chr13 21561970 21562279 -98182619 - AluY SINE Alu -5 306 1 366 260 65 88 chr13 21562279 21562554 -98182344 - HAL1b LINE L1 -348 1000 735 207 0 0 0 chr13 21562873 21562896 -98182002 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2186 74 0 18 chr13 21562896 21563181 -98181717 - AluSx SINE Alu -32 280 1 1724 130 3 34 chr13 21563624 21563916 -98180982 + AluSx SINE Alu 3 285 -27 492 62 0 0 chr13 21563916 21563980 -98180918 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2525 53 3 0 chr13 21564433 21564737 -98180161 + AluY SINE Alu 1 305 -6 281 326 112 23 chr13 21564758 21565701 -98179197 - L1M4 LINE L1 -2155 3991 2965 493 111 89 0 chr13 21565718 21565808 -98179090 + MER4A LTR ERV1 1 98 -566 1706 113 11 82 chr13 21565808 21566180 -98178718 + MER4A LTR ERV1 261 664 0 806 301 98 48 chr13 21566184 21566699 -98178199 - L1M4 LINE L1 -3200 2946 2385 2205 110 3 0 chr13 21566699 21566989 -98177909 + AluSq SINE Alu 2 292 -21 806 301 98 48 chr13 21566989 21567180 -98177718 - L1M4 LINE L1 -3761 2385 2205 25 51 0 0 chr13 21568734 21568773 -98176125 + AT_rich Low_complexity Low_complexity 1 39 0 4740 73 46 0 chr13 21569071 21569702 -98175196 - PABL_A LTR ERV1 0 660 1 602 186 0 8 chr13 21569715 21569833 -98175065 - L1P4 LINE L1 -402 5764 5648 * 7769 222 43 21 chr13 21569822 21571323 -98173575 - L1 LINE L1 -836 5546 4079 2340 89 0 13 chr13 21571323 21571626 -98173272 + AluY SINE Alu 1 299 -12 7769 222 43 21 chr13 21571626 21571782 -98173116 - L1 LINE L1 -2303 4079 3928 2153 106 0 3 chr13 21571782 21572090 -98172808 + AluSq SINE Alu 1 307 0 7769 222 43 21 chr13 21572090 21572732 -98172166 - L1 LINE L1 -2454 3928 3191 2063 178 70 5 chr13 21572732 21573130 -98171768 - MSTB LTR MaLR -2 424 1 7769 222 43 21 chr13 21573130 21573171 -98171727 - L1 LINE L1 -3191 3191 3152 2311 87 3 7 chr13 21573181 21573490 -98171408 - AluY SINE Alu -3 308 1 284 393 33 7 chr13 21573492 21573642 -98171256 - MIR SINE MIR -49 213 60 1941 154 106 23 chr13 21573951 21574346 -98170552 + MSTA LTR MaLR 1 428 0 2038 147 76 45 chr13 21574654 21575075 -98169823 + Tigger2a DNA MER2_type 1 434 0 1505 223 0 3 chr13 21575726 21576008 -98168890 + AluJo SINE Alu 1 281 -31 225 0 0 0 chr13 21576013 21576038 -98168860 + (T)n Simple_repeat Simple_repeat 1 25 0 643 197 74 18 chr13 21576059 21576263 -98168635 - L1 LINE L1 -3855 2527 2312 573 211 0 49 chr13 21576270 21576412 -98168486 - FAM SINE Alu -2 47 1 7294 215 57 31 chr13 21576425 21576683 -98168215 + L1M3 LINE L1 3001 3251 -2932 2213 101 3 0 chr13 21576683 21576971 -98167927 + AluY SINE Alu 13 301 -10 7294 215 57 31 chr13 21576971 21578318 -98166580 + L1M3 LINE L1 3251 4709 -1474 2341 107 0 0 chr13 21578318 21578618 -98166280 - AluSg SINE Alu -10 300 1 7294 215 57 31 chr13 21578618 21579526 -98165372 + L1M3 LINE L1 4709 5592 -591 485 131 12 0 chr13 21580296 21580380 -98164518 + MER61E LTR ERV1 1 85 -484 1019 204 139 15 chr13 21580607 21580945 -98163953 + LTR25 LTR ERV1 415 794 0 399 324 87 18 chr13 21580990 21581209 -98163689 + MIR SINE MIR 13 246 -16 432 0 0 0 chr13 21581499 21581547 -98163351 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 318 204 21 43 chr13 21582670 21582763 -98162135 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 21582908 21582982 -98161916 + AT_rich Low_complexity Low_complexity 1 74 0 549 311 76 62 chr13 21583018 21583373 -98161525 + L1M4 LINE L1 2364 2730 -3416 1958 138 0 10 chr13 21583373 21583670 -98161228 - AluSx SINE Alu -18 294 1 549 311 76 62 chr13 21583670 21583815 -98161083 + L1M4 LINE L1 2730 2871 -3275 843 256 78 20 chr13 21583874 21584362 -98160536 + L1M4 LINE L1 2988 3503 -2643 1609 110 17 8 chr13 21584502 21584739 -98160159 + AluSp SINE Alu 46 317 0 223 91 0 0 chr13 21584739 21584772 -98160126 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 184 191 119 0 chr13 21585731 21585773 -98159125 - L2 LINE L2 -9 3263 3217 238 296 14 0 chr13 21585804 21585875 -98159023 - L2 LINE L2 0 3272 3201 181 304 80 40 chr13 21586128 21586253 -98158645 - L2 LINE L2 -483 2831 2702 329 169 108 0 chr13 21586336 21586401 -98158497 + MER57A LTR ERV1 1 72 -331 605 258 189 23 chr13 21586450 21586807 -98158091 - L1M4 LINE L1 -841 5305 4886 2019 145 0 7 chr13 21586833 21587136 -98157762 + AluSx SINE Alu 1 301 -11 2458 76 3 0 chr13 21587286 21587588 -98157310 + AluY SINE Alu 1 303 -8 2347 82 0 14 chr13 21587971 21588264 -98156634 + AluSg SINE Alu 1 289 -21 188 204 204 0 chr13 21588715 21588769 -98156129 - L2 LINE L2 -8 3264 3200 186 43 0 0 chr13 21588948 21588971 -98155927 + (CA)n Simple_repeat Simple_repeat 1 23 0 753 257 18 0 chr13 21589062 21589233 -98155665 + MER5B DNA MER1_type 5 178 0 351 261 34 0 chr13 21589250 21589338 -98155560 + MER5A DNA MER1_type 14 104 -85 652 227 0 65 chr13 21589437 21589591 -98155307 + MLT1D LTR MaLR 3 146 -359 1445 232 171 5 chr13 21589594 21590067 -98154831 - L1MC4 LINE L1 -666 7376 6983 258 32 0 0 chr13 21590067 21590098 -98154800 + (CA)n Simple_repeat Simple_repeat 1 31 0 1445 232 171 5 chr13 21590098 21590215 -98154683 - L1MC4 LINE L1 -1059 6983 6540 1320 114 18 44 chr13 21590444 21590671 -98154227 + THE1C LTR MaLR 155 375 0 443 265 134 53 chr13 21590678 21590999 -98153899 - MLT1J2 LTR MaLR -31 419 73 2372 81 3 3 chr13 21591027 21591335 -98153563 - AluY SINE Alu -3 308 1 1935 103 24 0 chr13 21591335 21591626 -98153272 - AluY SINE Alu -13 298 1 25 51 0 0 chr13 21591818 21591857 -98153041 + AT_rich Low_complexity Low_complexity 1 39 0 968 122 0 0 chr13 21591930 21592053 -98152845 - FLAM_C SINE Alu -10 123 1 1770 167 3 32 chr13 21592071 21592382 -98152516 - AluJo SINE Alu -10 302 1 214 147 0 0 chr13 21593938 21593972 -98150926 + (CTG)n Simple_repeat Simple_repeat 2 35 0 28972 61 4 1 chr13 21595608 21599289 -98145609 + L1PA6 LINE L1 1552 5246 -900 1098 119 6 6 chr13 21599311 21599471 -98145427 + L1PA6 LINE L1 5985 6144 -10 7289 61 15 1 chr13 21599474 21600358 -98144540 + L1PA6 LINE L1 5254 6149 -5 1810 146 11 13 chr13 21600359 21600815 -98144083 - L1PBb LINE L1 -5006 1857 1403 441 283 35 12 chr13 21600830 21601003 -98143895 - L1PBb LINE L1 -6684 179 3 1180 180 0 0 chr13 21601027 21601216 -98143682 - MSTB LTR MaLR -237 189 1 7307 183 137 1 chr13 21601221 21602670 -98142228 - MSTB-int LTR MaLR -6 1645 1 2574 169 29 2 chr13 21602670 21603085 -98141813 - MSTB LTR MaLR 0 426 1 853 225 19 0 chr13 21603480 21603640 -98141258 - FRAM SINE Alu -3 163 1 394 328 40 35 chr13 21603779 21603953 -98140945 + MIR3 SINE MIR 6 180 -28 2506 74 0 0 chr13 21604021 21604332 -98140566 - AluY SINE Alu 0 311 1 202 122 73 24 chr13 21604434 21604475 -98140423 + L2 LINE L2 3269 3311 -2 1175 165 64 23 chr13 21605023 21605241 -98139657 - AluJo SINE Alu -85 227 1 510 124 90 0 chr13 21608690 21608779 -98136119 + MER4A LTR ERV1 2 98 -566 1553 157 6 52 chr13 21608779 21608953 -98135945 + MER4A LTR ERV1 261 442 -222 2325 103 3 0 chr13 21608953 21609255 -98135643 - AluSx SINE Alu -9 303 1 1553 157 6 52 chr13 21609255 21609441 -98135457 + MER4A LTR ERV1 442 663 -1 274 303 25 33 chr13 21609520 21609642 -98135256 + MIR SINE MIR 92 212 -50 304 281 27 23 chr13 21610603 21611010 -98133888 - ALR/Alpha Satellite centromeric -41 408 1 2302 93 3 0 chr13 21611069 21611370 -98133528 - AluSp SINE Alu -11 302 1 432 256 20 20 chr13 21611437 21611647 -98133251 - ALR/Alpha Satellite centromeric 0 210 1 251 265 48 42 chr13 21611921 21612087 -98132811 - ALR/Alpha Satellite centromeric -5 167 1 352 268 36 33 chr13 21612196 21612563 -98132335 - ALR/Alpha Satellite centromeric -6 368 1 2095 113 17 0 chr13 21613123 21613414 -98131484 - AluSq SINE Alu -15 298 3 515 202 52 88 chr13 21613422 21613605 -98131293 - L1M4 LINE L1 -2884 3262 3091 2127 97 3 7 chr13 21613605 21613894 -98131004 - AluSx SINE Alu -24 288 1 515 202 52 88 chr13 21613894 21613982 -98130916 - L1M4 LINE L1 -3055 3091 3001 857 227 92 14 chr13 21613982 21614264 -98130634 - MER113 DNA MER1_type? -190 331 28 2341 112 0 3 chr13 21614559 21614872 -98130026 + AluSx SINE Alu 1 312 0 242 358 74 51 chr13 21614923 21615275 -98129623 + L3 LINE CR1 296 655 -922 2366 75 0 0 chr13 21615574 21615869 -98129029 - AluY SINE Alu -16 295 1 2138 120 3 3 chr13 21616614 21616913 -98127985 + AluSp SINE Alu 1 299 -14 2032 149 0 7 chr13 21617176 21617484 -98127414 + AluSx SINE Alu 1 306 -6 2441 57 0 10 chr13 21617617 21617914 -98126984 - AluY SINE Alu -17 294 1 1871 94 106 0 chr13 21620212 21620487 -98124411 + AluSp SINE Alu 1 304 -9 2403 70 6 13 chr13 21620488 21620801 -98124097 + AluY SINE Alu 1 311 0 313 145 0 0 chr13 21620862 21620932 -98123966 - Alu SINE Alu -2 298 247 22 56 0 0 chr13 21621279 21621315 -98123583 + AT_rich Low_complexity Low_complexity 1 36 0 1251 88 57 0 chr13 21621593 21621785 -98123113 + L1PB3 LINE L1 5531 5733 -421 1176 126 0 0 chr13 21621785 21621959 -98122939 + AluY SINE Alu 136 309 -2 356 123 0 84 chr13 21621959 21622042 -98122856 + L1PB3 LINE L1 5727 5791 -360 33 0 0 0 chr13 21622042 21622075 -98122823 + AT_rich Low_complexity Low_complexity 1 33 0 2569 110 0 46 chr13 21622099 21622490 -98122408 + L1PB3 LINE L1 5782 6154 0 22 35 0 0 chr13 21622646 21622675 -98122223 + AT_rich Low_complexity Low_complexity 1 29 0 230 215 0 15 chr13 21622756 21622821 -98122077 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 21 0 0 0 chr13 21622999 21623020 -98121878 + AT_rich Low_complexity Low_complexity 1 21 0 1496 173 63 70 chr13 21623975 21624276 -98120622 + AluJb SINE Alu 1 299 -13 238 253 93 47 chr13 21624658 21624808 -98120090 + L1MC5 LINE L1 7757 7913 -48 411 268 328 0 chr13 21626137 21626320 -98118578 - MIR SINE MIR -14 248 6 882 216 10 113 chr13 21627201 21627346 -98117552 + MER21B LTR ERV1 1 103 -760 2472 80 0 0 chr13 21627346 21627657 -98117241 - AluY SINE Alu 0 311 1 882 216 10 113 chr13 21627657 21627803 -98117095 + MER21B LTR ERV1 103 262 -601 * 1007 147 153 1 chr13 21627800 21628127 -98116771 + MER31B LTR ERV1 47 466 0 2114 128 0 3 chr13 21628169 21628465 -98116433 + AluSx SINE Alu 1 295 -17 1595 221 75 107 chr13 21628534 21629255 -98115643 + MER31B-int LTR ERV1 42 739 -4197 5304 178 106 85 chr13 21629262 21629639 -98115259 + MER31B-int LTR ERV1 883 1251 -3685 2220 123 0 0 chr13 21629639 21629940 -98114958 + AluSx SINE Alu 1 301 -11 5304 178 106 85 chr13 21629940 21631321 -98113577 + MER31B-int LTR ERV1 1251 2678 -2258 2896 65 4 152 chr13 21631328 21631507 -98113391 - MER4E LTR ERV1 -7 759 555 2333 94 3 0 chr13 21631507 21631805 -98113093 + AluSp SINE Alu 1 299 -14 2896 65 4 152 chr13 21631805 21631848 -98113050 - MER4E LTR ERV1 -211 555 507 2242 118 0 3 chr13 21631848 21632153 -98112745 + AluSq SINE Alu 1 304 -9 2896 65 4 152 chr13 21632153 21632427 -98112471 - MER4E LTR ERV1 -259 507 341 1454 87 82 19 chr13 21632427 21632635 -98112263 + AluSc SINE Alu 77 297 -12 2896 65 4 152 chr13 21632635 21632663 -98112235 - MER4E LTR ERV1 -425 341 311 2626 147 40 4 chr13 21632663 21632825 -98112073 + LTR19A LTR ERV1 1 156 -330 3753 111 24 29 chr13 21632825 21633375 -98111523 + LTR10B LTR ERV1 1 547 0 2626 147 40 4 chr13 21633375 21633681 -98111217 + LTR19A LTR ERV1 156 486 0 1989 92 86 3 chr13 21633670 21633698 -98111200 - MER4E LTR ERV1 -438 328 304 * 180 0 0 0 chr13 21633698 21633718 -98111180 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 1989 92 86 3 chr13 21633718 21633992 -98110906 - MER4E LTR ERV1 -462 304 1 2535 61 0 0 chr13 21634006 21634317 -98110581 - AluY SINE Alu 0 311 1 1532 247 27 25 chr13 21634318 21634760 -98110138 + MER31B-int LTR ERV1 2675 3117 -1819 470 156 89 0 chr13 21634765 21634855 -98110043 + MER4A LTR ERV1 1 98 -566 1671 148 162 73 chr13 21634855 21635226 -98109672 + MER4A LTR ERV1 261 664 0 2400 144 103 135 chr13 21635227 21635496 -98109402 + MER31B-int LTR ERV1 3120 3396 -1540 2206 101 7 0 chr13 21635496 21635792 -98109106 + AluY SINE Alu 1 298 -13 2400 144 103 135 chr13 21635792 21636285 -98108613 + MER31B-int LTR ERV1 3396 3858 -1078 229 203 63 51 chr13 21636285 21636364 -98108534 + MLT1A2 LTR MaLR 237 316 -58 795 195 95 0 chr13 21636364 21636493 -98108405 + MER31B-int LTR ERV1 3939 4089 -847 2239 98 3 10 chr13 21636493 21636789 -98108109 + AluSg SINE Alu 1 294 -16 795 195 95 0 chr13 21636789 21636828 -98108070 + MER31B-int LTR ERV1 4089 4123 -813 7021 95 24 1 chr13 21636833 21637844 -98107054 - L1P LINE L1 -2468 3678 2645 11363 93 18 1 chr13 21637845 21640135 -98104763 + L1PA7 LINE L1 3815 6149 -5 229 173 93 27 chr13 21640241 21640316 -98104582 + L1MB7 LINE L1 6105 6184 0 648 208 44 25 chr13 21640326 21640485 -98104413 + MER31B-int LTR ERV1 4118 4279 -657 357 152 0 38 chr13 21640486 21640565 -98104333 + LTR37A LTR ERV1 41 116 -310 886 135 122 80 chr13 21640738 21640787 -98104111 + MER31B-int LTR ERV1 4673 4718 -218 2543 65 0 3 chr13 21640787 21641097 -98103801 - AluY SINE Alu -2 309 1 886 135 122 80 chr13 21641097 21641284 -98103614 + MER31B-int LTR ERV1 4718 4919 -17 1604 227 55 23 chr13 21641287 21641723 -98103175 + MER31B LTR ERV1 7 456 -10 2478 54 10 0 chr13 21642282 21642578 -98102320 + AluY SINE Alu 1 299 -12 251 322 15 18 chr13 21642581 21642768 -98102130 - ALR/Alpha Satellite centromeric -5 186 1 298 280 50 38 chr13 21642783 21643037 -98101861 - ALR/Alpha Satellite centromeric -5 257 1 1746 166 7 0 chr13 21646432 21646728 -98098170 + AluSx SINE Alu 1 298 -14 451 317 76 40 chr13 21647013 21647157 -98097741 - L1M4 LINE L1 -832 5314 5177 1889 143 31 3 chr13 21647157 21647450 -98097448 - AluJo SINE Alu -11 301 1 451 317 76 40 chr13 21647450 21647804 -98097094 - L1M4 LINE L1 -969 5177 4798 651 76 0 0 chr13 21647985 21648077 -98096821 - L1P5 LINE L1 -658 5496 5405 11894 110 18 10 chr13 21648431 21648450 -98096448 + Tigger1 DNA MER2_type 29 46 -2372 2487 55 0 10 chr13 21648450 21648759 -98096139 - AluY SINE Alu -5 306 1 11894 110 18 10 chr13 21648759 21650279 -98094619 + Tigger1 DNA MER2_type 46 1586 -832 2161 123 7 0 chr13 21650279 21650579 -98094319 + AluSq SINE Alu 1 302 -11 11894 110 18 10 chr13 21650579 21650783 -98094115 + Tigger1 DNA MER2_type 1586 1787 -631 347 44 0 0 chr13 21650781 21650826 -98094072 - AluY SINE Alu -6 296 252 * 1068 70 0 0 chr13 21650828 21650957 -98093941 - AluY SINE Alu -182 129 1 1021 150 17 11 chr13 21650957 21651137 -98093761 + Tigger1 DNA MER2_type 2238 2418 0 1278 134 4 78 chr13 21652921 21653153 -98091745 + AluJo SINE Alu 85 299 -13 22 88 0 0 chr13 21653392 21653449 -98091449 + AT_rich Low_complexity Low_complexity 1 57 0 1304 114 5 0 chr13 21653611 21653795 -98091103 + AluSq SINE Alu 129 313 0 360 0 0 0 chr13 21654541 21654581 -98090317 + (TG)n Simple_repeat Simple_repeat 1 40 0 236 264 186 8 chr13 21654755 21654884 -98090014 + MIR SINE MIR 2 153 -109 276 264 136 16 chr13 21655026 21655151 -98089747 - L3 LINE CR1 -264 1313 1174 480 272 63 32 chr13 21655213 21655371 -98089527 + MIR SINE MIR 82 244 -18 228 67 0 0 chr13 21655383 21655413 -98089485 + (TTA)n Simple_repeat Simple_repeat 1 30 0 264 59 0 0 chr13 21655752 21655786 -98089112 + (TC)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chr13 21655786 21655813 -98089085 + (CA)n Simple_repeat Simple_repeat 1 27 0 202 211 19 0 chr13 21656464 21656516 -98088382 + GA-rich Low_complexity Low_complexity 4 56 0 1743 113 132 4 chr13 21657193 21657458 -98087440 + AluSx SINE Alu 1 299 -13 1814 154 48 3 chr13 21658632 21658964 -98085934 - L1MB7 LINE L1 -16 6168 5822 1242 119 0 0 chr13 21659005 21659165 -98085733 - AluSx SINE Alu -152 160 1 184 257 57 43 chr13 21659681 21659751 -98085147 - L2 LINE L2 -86 3186 3116 324 303 119 88 chr13 21660240 21660953 -98083945 - L1M2 LINE L1 -5420 1429 695 2173 73 12 76 chr13 21662109 21662438 -98082460 - AluSc SINE Alu -1 308 1 253 270 14 27 chr13 21663448 21663522 -98081376 - L2 LINE L2 -999 2315 2243 180 271 62 0 chr13 21663586 21663634 -98081264 - L2 LINE L2 -18 3254 3204 233 111 22 89 chr13 21663929 21663974 -98080924 - Alu SINE Alu -176 126 85 313 276 0 11 chr13 21664158 21664245 -98080653 + (TATG)n Simple_repeat Simple_repeat 3 88 0 1902 129 0 85 chr13 21664912 21665253 -98079645 - AluSx SINE Alu 0 312 1 1430 208 20 60 chr13 21665268 21665668 -98079230 + L1MA10 LINE L1 5950 6333 -1 2154 127 0 0 chr13 21665776 21666075 -98078823 + AluY SINE Alu 1 299 -12 2243 104 0 3 chr13 21666089 21666388 -98078510 + AluY SINE Alu 1 298 -13 2248 88 0 3 chr13 21666935 21667246 -98077652 + AluY SINE Alu 1 310 0 369 109 0 0 chr13 21667827 21667882 -98077016 + (CCAA)n Simple_repeat Simple_repeat 1 55 0 2327 99 3 0 chr13 21668040 21668352 -98076546 + AluSq SINE Alu 1 313 0 222 242 39 102 chr13 21668990 21669118 -98075780 - MIR3 SINE MIR -6 202 83 1143 113 19 0 chr13 21670963 21671122 -98073776 - AluSx SINE Alu -150 162 1 936 132 0 0 chr13 21671150 21671286 -98073612 + AluSq/x SINE Alu 1 136 -177 2519 63 0 0 chr13 21671286 21671586 -98073312 + AluY SINE Alu 1 300 -11 22 0 0 0 chr13 21671787 21671809 -98073089 + AT_rich Low_complexity Low_complexity 1 22 0 252 341 57 11 chr13 21672269 21672357 -98072541 - L2 LINE L2 -5 3267 3176 2283 98 3 16 chr13 21672550 21672865 -98072033 + AluSx SINE Alu 2 312 0 213 39 0 0 chr13 21673600 21673626 -98071272 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 2111 112 42 0 chr13 21673765 21674051 -98070847 - AluSx SINE Alu -14 298 1 207 0 0 0 chr13 21674140 21674163 -98070735 + (TA)n Simple_repeat Simple_repeat 1 23 0 2304 82 0 60 chr13 21674562 21674893 -98070005 + AluY SINE Alu 1 311 0 2981 287 75 38 chr13 21675066 21675799 -98069099 + L1MC4a LINE L1 2278 2982 -3164 2122 139 0 3 chr13 21675799 21676100 -98068798 + AluSx SINE Alu 1 300 -12 2981 287 75 38 chr13 21676100 21677750 -98067148 + L1MC4a LINE L1 2982 4570 -1576 1515 124 55 0 chr13 21677750 21677968 -98066930 - MER30 DNA MER1_type 0 230 1 2981 287 75 38 chr13 21677968 21678056 -98066842 + L1MC4a LINE L1 4570 4653 -1493 2114 118 35 0 chr13 21678056 21678344 -98066554 - AluSx SINE Alu -14 298 1 2981 287 75 38 chr13 21678344 21679111 -98065787 + L1MC4a LINE L1 4653 4950 -1196 2545 52 3 0 chr13 21679111 21679418 -98065480 + AluY SINE Alu 1 308 -3 2981 287 75 38 chr13 21679418 21679885 -98065013 + L1MC4a LINE L1 4950 5398 -748 1328 164 36 5 chr13 21682327 21682547 -98062351 - MSTB LTR MaLR 0 426 200 2530 111 24 26 chr13 21682577 21682956 -98061942 - L1PB3 LINE L1 0 6870 6493 1856 74 18 0 chr13 21682999 21683228 -98061670 - AluSx SINE Alu -17 295 63 10798 195 51 22 chr13 21683228 21683686 -98061212 - L1PB3 LINE L1 -370 6500 6057 2177 123 0 3 chr13 21683686 21683987 -98060911 - AluSc SINE Alu -9 300 1 10798 195 51 22 chr13 21683987 21688006 -98056892 - L1PB3 LINE L1 -813 6057 1888 15589 66 7 4 chr13 21688020 21690205 -98054693 + L1P LINE L1 1425 3616 -2530 273 280 76 49 chr13 21690942 21691111 -98053787 - MIR SINE MIR -71 191 17 246 230 0 87 chr13 21691273 21691400 -98053498 + MLT1J LTR MaLR 110 289 -326 266 189 67 11 chr13 21691527 21691617 -98053281 + MLT1L LTR MaLR 489 583 -32 25 51 0 0 chr13 21691906 21691945 -98052953 + AT_rich Low_complexity Low_complexity 1 39 0 554 172 26 9 chr13 21691953 21692069 -98052829 - L1MB4 LINE L1 -12 6168 6051 726 243 41 4 chr13 21692609 21692877 -98052021 - L1M4 LINE L1 -2770 3376 3099 * 2916 184 56 6 chr13 21692873 21693520 -98051378 - L1 LINE L1 -2193 3953 3275 345 329 0 12 chr13 21694018 21694179 -98050719 + L1ME3A LINE L1 6000 6158 -12 247 200 40 40 chr13 21694232 21694307 -98050591 + MARNA DNA Mariner 368 442 -144 21 0 0 0 chr13 21694541 21694562 -98050336 + AT_rich Low_complexity Low_complexity 1 21 0 2186 110 0 31 chr13 21694684 21695002 -98049896 - AluSx SINE Alu -4 308 1 21 36 0 0 chr13 21695023 21695051 -98049847 + AT_rich Low_complexity Low_complexity 1 28 0 319 301 65 0 chr13 21696323 21696446 -98048452 + MER94 DNA DNA 2 132 -2 31 82 0 0 chr13 21696492 21696565 -98048333 + AT_rich Low_complexity Low_complexity 1 73 0 961 232 50 53 chr13 21701273 21701652 -98043246 - L1ME3A LINE L1 -5 6165 5788 329 264 50 36 chr13 21701659 21701799 -98043099 - MARNA DNA Mariner -197 389 248 2073 119 40 57 chr13 21702208 21702578 -98042320 - THE1B LTR MaLR 0 364 1 270 341 184 30 chr13 21703446 21703950 -98040948 + L2 LINE L2 1621 2202 -1112 432 258 113 25 chr13 21704003 21704162 -98040736 + MIR SINE MIR 3 175 -87 245 262 36 12 chr13 21704444 21704528 -98040370 + L2 LINE L2 2303 2388 -926 226 247 169 26 chr13 21704990 21705067 -98039831 + L2 LINE L2 3163 3250 -22 409 267 153 28 chr13 21705088 21705264 -98039634 + L2 LINE L2 2918 3115 -157 191 350 120 0 chr13 21705569 21705686 -98039212 - MIR SINE MIR -70 192 62 24 53 0 0 chr13 21705863 21705901 -98038997 + AT_rich Low_complexity Low_complexity 1 38 0 271 341 81 32 chr13 21706208 21706331 -98038567 + L2 LINE L2 3116 3244 -28 27 0 0 0 chr13 21706656 21706683 -98038215 + AT_rich Low_complexity Low_complexity 1 27 0 2179 116 0 3 chr13 21707448 21707758 -98037140 + AluSg1 SINE Alu 1 309 0 27 0 0 0 chr13 21707974 21708001 -98036897 + AT_rich Low_complexity Low_complexity 1 27 0 245 167 0 45 chr13 21708550 21708616 -98036282 + CT-rich Low_complexity Low_complexity 2 64 0 2261 100 0 0 chr13 21710187 21710487 -98034411 - AluSg1 SINE Alu -9 300 1 227 328 48 40 chr13 21710969 21711094 -98033804 - MIR3 SINE MIR -48 160 35 1406 148 26 4 chr13 21711226 21711456 -98033442 + MER46A DNA MER2_type 1 235 -1 21 0 0 0 chr13 21711726 21711747 -98033151 + AT_rich Low_complexity Low_complexity 1 21 0 2541 62 7 3 chr13 21711805 21712114 -98032784 + AluY SINE Alu 1 310 -1 185 293 110 0 chr13 21713618 21713700 -98031198 + L3 LINE CR1 559 649 -928 21 0 0 0 chr13 21724369 21724390 -98020508 + AT_rich Low_complexity Low_complexity 1 21 0 726 283 40 4 chr13 21725701 21725977 -98018921 - MER46C DNA MER2_type -52 286 1 2375 95 0 0 chr13 21726897 21727203 -98017695 - AluY SINE Alu -3 308 3 279 277 71 36 chr13 21728425 21728537 -98016361 + MIR SINE MIR 68 145 -63 276 219 167 0 chr13 21728613 21728709 -98016189 + MIR SINE MIR 81 192 -70 237 274 62 60 chr13 21730901 21731063 -98013835 - MIR3 SINE MIR -82 180 15 2019 164 82 9 chr13 21731236 21731663 -98013235 + LTR32 LTR ERVL 9 466 -5 2366 195 28 28 chr13 21732059 21732603 -98012295 + MER44D DNA MER2_type 7 605 0 180 0 0 0 chr13 21733259 21733279 -98011619 + (A)n Simple_repeat Simple_repeat 1 20 0 572 222 8 0 chr13 21733588 21733705 -98011193 - FAM SINE Alu -37 148 31 2193 112 0 7 chr13 21734555 21734859 -98010039 - AluSg SINE Alu -8 302 1 220 222 49 0 chr13 21735366 21735447 -98009451 + (TA)n Simple_repeat Simple_repeat 2 86 0 2831 65 48 83 chr13 21735605 21736065 -98008833 - MLT2A1 LTR ERVL 0 444 1 20047 55 12 10 chr13 21736065 21736671 -98008227 - HERVL-A1 LTR ERVL 0 5654 5051 2115 93 39 0 chr13 21736671 21736951 -98007947 - AluY SINE Alu -20 291 1 20047 55 12 10 chr13 21736951 21739310 -98005588 - HERVL-A1 LTR ERVL -603 5051 2677 353 74 19 0 chr13 21739302 21739356 -98005542 - HERVL-A1 LTR ERVL -5599 55 1 * 355 69 0 52 chr13 21739356 21739414 -98005484 - MLT2A1 LTR ERVL 0 453 399 234 0 0 0 chr13 21739466 21739492 -98005406 + (TA)n Simple_repeat Simple_repeat 1 26 0 341 47 0 0 chr13 21739591 21739634 -98005264 + MLT2A2 LTR ERVL 411 453 0 243 200 0 15 chr13 21739684 21739749 -98005149 + (TA)n Simple_repeat Simple_repeat 1 64 0 2890 68 20 5 chr13 21739750 21740148 -98004750 - MLT2A1 LTR ERVL -40 404 1 2272 126 0 0 chr13 21740410 21740719 -98004179 + AluSx SINE Alu 1 309 -3 1238 180 54 0 chr13 21741126 21741365 -98003533 - L1PB4 LINE L1 -12 6144 5893 742 271 70 11 chr13 21742139 21742412 -98002486 + LTR68 LTR ERV1 1 289 -451 432 287 108 25 chr13 21742452 21742838 -98002060 + L1MEc LINE L1 1595 2092 -809 325 276 24 16 chr13 21743177 21743300 -98001598 + L1MEc LINE L1 2452 2575 -3965 2580 61 0 0 chr13 21743489 21743800 -98001098 + AluY SINE Alu 1 311 0 282 280 81 57 chr13 21744183 21744394 -98000504 + L1M4 LINE L1 3975 4190 -1956 639 144 0 136 chr13 21744466 21744598 -98000300 + FLAM_A SINE Alu 1 114 -19 186 43 0 0 chr13 21744600 21744623 -98000275 + (TC)n Simple_repeat Simple_repeat 1 23 0 729 316 128 46 chr13 21744714 21745010 -97999888 + L1M4 LINE L1 4342 4612 -1534 1996 159 3 0 chr13 21745010 21745300 -97999598 + AluSx SINE Alu 3 293 -19 729 316 128 46 chr13 21745300 21745636 -97999262 + L1M4 LINE L1 4612 5026 -1120 21 0 0 0 chr13 21746839 21746860 -97998038 + AT_rich Low_complexity Low_complexity 1 21 0 249 309 32 35 chr13 21747347 21747661 -97997237 + L1MEc LINE L1 3713 4025 -2515 1024 198 126 0 chr13 21747708 21747825 -97997073 + AluJo SINE Alu 1 102 -210 189 0 0 0 chr13 21747825 21747846 -97997052 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1024 198 126 0 chr13 21747846 21747950 -97996948 + AluJo SINE Alu 102 250 -62 2116 57 0 47 chr13 21748442 21748742 -97996156 + AluY SINE Alu 1 286 -25 1416 117 5 0 chr13 21748744 21748986 -97995912 + AluSg/x SINE Alu 85 327 0 196 222 74 0 chr13 21750530 21750584 -97994314 - MIR SINE MIR -117 145 88 1129 143 38 5 chr13 21750601 21750811 -97994087 - MSTB1 LTR MaLR -24 408 192 226 257 0 57 chr13 21751035 21751140 -97993758 + CT-rich Low_complexity Low_complexity 6 104 0 2218 103 0 7 chr13 21751637 21751937 -97992961 - AluSx SINE Alu -14 298 1 1357 249 38 0 chr13 21751939 21752336 -97992562 - L1M4 LINE L1 -1780 4366 3955 207 0 0 0 chr13 21752336 21752359 -97992539 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1894 82 0 0 chr13 21752371 21752604 -97992294 - AluSc SINE Alu -76 233 1 913 225 10 0 chr13 21752604 21752804 -97992094 - L1MCa LINE L1 -6206 220 19 6565 91 27 21 chr13 21752890 21753842 -97991056 - L1MA2 LINE L1 -8 6296 5332 2071 141 0 16 chr13 21753842 21754147 -97990751 - AluSx SINE Alu -12 300 1 6565 91 27 21 chr13 21754147 21754333 -97990565 - L1MA2 LINE L1 -972 5332 5148 339 309 77 65 chr13 21754336 21754582 -97990316 + L2 LINE L2 3037 3285 -28 469 179 83 36 chr13 21754939 21755107 -97989791 + MER104 DNA MER2_type 2 177 -3 36 0 0 0 chr13 21755147 21755183 -97989715 + AT_rich Low_complexity Low_complexity 1 36 0 2047 88 4 0 chr13 21755510 21755771 -97989127 + AluSc SINE Alu 1 262 -47 3585 107 2 4 chr13 21755772 21756284 -97988614 + MER9 LTR ERVK 1 511 0 278 336 54 0 chr13 21756355 21756504 -97988394 - MIR SINE MIR -50 212 56 25 31 0 0 chr13 21756524 21756556 -97988342 + AT_rich Low_complexity Low_complexity 1 32 0 1515 168 22 16 chr13 21756823 21757145 -97987753 + L1MB3 LINE L1 5859 6182 -1 585 255 130 11 chr13 21758705 21758889 -97986009 - MIR SINE MIR -52 210 5 2182 106 3 7 chr13 21759702 21760003 -97984895 - AluSx SINE Alu -12 300 1 1785 163 101 31 chr13 21761015 21761145 -97983753 - MER65C LTR ERV1 -7 454 335 2243 119 0 0 chr13 21761145 21761439 -97983459 + AluSx SINE Alu 5 298 -14 1785 163 101 31 chr13 21761439 21761732 -97983166 - MER65C LTR ERV1 -126 335 1 951 302 211 34 chr13 21762882 21763806 -97981092 + L2 LINE L2 1747 2834 -480 369 271 31 16 chr13 21764184 21764313 -97980585 + MLT1L LTR MaLR 468 598 -17 2136 112 3 0 chr13 21765498 21765810 -97979088 + AluSc SINE Alu 1 313 0 1142 233 185 75 chr13 21765926 21766509 -97978389 - MLT1E2 LTR MaLR -4 622 4 537 167 17 50 chr13 21766569 21766689 -97978209 + Tigger7 DNA MER2_type 1 116 -617 1845 136 14 32 chr13 21766697 21767043 -97977855 + Tigger7 DNA MER2_type 2248 2587 0 273 353 59 0 chr13 21767369 21767454 -97977444 - MIR SINE MIR -85 123 34 12541 106 12 12 chr13 21767478 21770529 -97974369 + L1P3 LINE L1 1 3071 -3390 1081 197 112 16 chr13 21770665 21770782 -97974116 + AluJo SINE Alu 1 105 -207 189 0 0 0 chr13 21770782 21770803 -97974095 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1081 197 112 16 chr13 21770803 21770934 -97973964 + AluJo SINE Alu 105 273 -39 603 321 105 16 chr13 21770986 21771811 -97973087 + L1MC/D LINE L1 3797 4709 -1437 1769 124 4 0 chr13 21771920 21772020 -97972878 + AluSx SINE Alu 23 121 -191 243 0 0 0 chr13 21772020 21772047 -97972851 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1769 124 4 0 chr13 21772047 21772203 -97972695 + AluSx SINE Alu 121 280 -32 311 221 0 117 chr13 21772361 21772524 -97972374 + L1MC/D LINE L1 4887 5030 -1116 1026 227 74 60 chr13 21772648 21773123 -97971775 + L1MC/D LINE L1 5214 5691 -743 529 287 72 21 chr13 21773206 21773541 -97971357 - L1MEc LINE L1 -6001 395 44 446 247 55 7 chr13 21773585 21773731 -97971167 + Charlie2 DNA MER1_type 169 321 -2461 1078 194 91 142 chr13 21773735 21774165 -97970733 + Charlie2 DNA MER1_type 1854 2216 -646 1102 144 0 0 chr13 21774165 21774353 -97970545 - L1MA5 LINE L1 -2 6298 6111 1078 194 91 142 chr13 21774353 21774822 -97970076 + Charlie2 DNA MER1_type 2216 2707 -155 2348 96 0 16 chr13 21774910 21775222 -97969676 - AluSx SINE Alu -5 307 1 495 201 117 13 chr13 21775285 21775439 -97969459 - L1MD3 LINE L1 -1095 6900 6731 309 279 62 50 chr13 21775442 21775621 -97969277 - L1MDa LINE L1 -5190 1350 1170 2440 52 0 3 chr13 21775703 21775993 -97968905 - AluY SINE Alu -22 289 1 207 0 0 0 chr13 21775994 21776017 -97968881 + (T)n Simple_repeat Simple_repeat 1 23 0 203 356 17 0 chr13 21776861 21776920 -97967978 + L2 LINE L2 3127 3186 -86 2333 78 3 0 chr13 21777075 21777369 -97967529 + AluY SINE Alu 1 295 -16 450 0 0 0 chr13 21777369 21777419 -97967479 + (TA)n Simple_repeat Simple_repeat 2 51 0 403 307 132 15 chr13 21777639 21777844 -97967054 + MIR SINE MIR 28 256 -6 24 0 0 0 chr13 21778123 21778147 -97966751 + AT_rich Low_complexity Low_complexity 1 24 0 1091 123 0 0 chr13 21778475 21778621 -97966277 - AluSg/x SINE Alu -31 281 136 9115 98 12 0 chr13 21778721 21780084 -97964814 + L1P LINE L1 1517 2895 -3251 471 170 0 80 chr13 21780099 21780199 -97964699 + MER20 DNA MER1_type 117 208 -11 2810 100 47 7 chr13 21780199 21780629 -97964269 + L1PA13 LINE L1 5717 6163 0 2045 170 18 0 chr13 21781045 21781375 -97963523 + MER1B DNA MER1_type 1 336 -1 898 183 0 56 chr13 21781442 21781571 -97963327 + MER5A DNA MER1_type 1 121 -68 1887 142 0 17 chr13 21781571 21781901 -97962997 - AluJb SINE Alu 0 325 1 898 183 0 56 chr13 21781901 21781949 -97962949 + MER5A DNA MER1_type 121 170 -19 354 332 124 0 chr13 21782150 21782352 -97962546 - MIR SINE MIR -34 228 2 2276 113 0 0 chr13 21782927 21783227 -97961671 + AluSx SINE Alu 1 300 -12 1273 105 0 0 chr13 21784491 21784662 -97960236 - AluSp SINE Alu -10 303 133 2807 245 56 49 chr13 21784770 21784839 -97960059 - L1MEc LINE L1 -3025 3190 3123 2481 72 13 0 chr13 21784839 21785145 -97959753 - AluY SINE Alu -1 310 1 2807 245 56 49 chr13 21785145 21787326 -97957572 - L1MEc LINE L1 -3092 3123 953 2017 255 19 36 chr13 21787337 21788034 -97956864 - L1MEc LINE L1 -5654 742 58 2386 56 0 3 chr13 21789309 21789621 -97955277 - AluY SINE Alu 0 311 1 2308 86 33 0 chr13 21790627 21790930 -97953968 - AluSp SINE Alu 0 313 1 466 234 2 28 chr13 21791681 21791822 -97953076 - L1ME1 LINE L1 0 6164 6029 223 297 171 9 chr13 21791845 21791956 -97952942 - L2 LINE L2 -1 3312 3184 486 315 64 8 chr13 21791987 21792238 -97952660 + L2 LINE L2 1891 2155 -1159 1000 165 14 14 chr13 21792311 21792529 -97952369 - L1MB3 LINE L1 -7 6176 5959 2526 171 24 4 chr13 21792631 21793129 -97951769 - L1MB3 LINE L1 -208 5963 5456 209 274 88 62 chr13 21793165 21793226 -97951672 + L2 LINE L2 2260 2327 -987 2081 80 0 0 chr13 21793226 21793476 -97951422 - AluY SINE Alu -22 289 40 209 274 88 62 chr13 21793476 21793527 -97951371 + L2 LINE L2 2327 2375 -939 2141 124 10 0 chr13 21793881 21794179 -97950719 - AluSx SINE Alu -11 301 1 9080 172 24 39 chr13 21794685 21796832 -97948066 + L1PA15 LINE L1 3606 5735 -430 2123 108 3 45 chr13 21796832 21797146 -97947752 + AluSx SINE Alu 1 301 -11 9080 172 24 39 chr13 21797146 21797562 -97947336 + L1PA15 LINE L1 5735 6156 -9 21 0 0 0 chr13 21797632 21797653 -97947245 + AT_rich Low_complexity Low_complexity 1 21 0 1447 183 63 0 chr13 21797922 21798190 -97946708 + AluJb SINE Alu 1 285 -27 828 221 232 29 chr13 21798215 21798638 -97946260 - L1ME1 LINE L1 -144 6022 5523 23 54 0 0 chr13 21798991 21799028 -97945870 + AT_rich Low_complexity Low_complexity 1 37 0 262 344 38 6 chr13 21799501 21799661 -97945237 - L1M4 LINE L1 -1999 4147 3983 203 383 43 11 chr13 21799730 21799824 -97945074 + MIR SINE MIR 29 125 -137 308 253 42 0 chr13 21800038 21800133 -97944765 + U6 snRNA snRNA 9 107 0 186 171 0 0 chr13 21800544 21800585 -97944313 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2417 155 67 0 chr13 21803152 21803584 -97941314 - LOR1b LTR ERV1 0 461 1 1908 142 3 26 chr13 21804067 21804369 -97940529 - AluSx SINE Alu -13 299 5 307 309 68 60 chr13 21805170 21805299 -97939599 - L2 LINE L2 -169 3144 3017 2433 130 47 5 chr13 21805299 21805707 -97939191 - MSTA LTR MaLR 0 428 4 307 309 68 60 chr13 21805707 21805842 -97939056 - L2 LINE L2 -296 3017 2878 2404 81 0 0 chr13 21806858 21807156 -97937742 - AluY SINE Alu -13 298 1 778 139 44 0 chr13 21807762 21807899 -97936999 - Tigger5 DNA MER2_type -66 2257 2115 4913 169 20 3 chr13 21809592 21810896 -97934002 - L1MB1 LINE L1 -501 5667 4342 2546 157 34 16 chr13 21810896 21811396 -97933502 + L1MB1 LINE L1 5645 6155 -13 24 0 0 0 chr13 21811397 21811421 -97933477 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr13 21812436 21812492 -97932406 + AT_rich Low_complexity Low_complexity 1 56 0 732 97 0 0 chr13 21812769 21812985 -97931913 + AluSg/x SINE Alu 208 423 0 26 50 0 0 chr13 21813996 21814036 -97930862 + AT_rich Low_complexity Low_complexity 1 40 0 2389 97 0 0 chr13 21814307 21814615 -97930283 + AluY SINE Alu 1 308 -3 903 318 151 14 chr13 21815013 21815587 -97929311 + L2 LINE L2 2386 3049 -223 922 212 74 11 chr13 21815848 21816275 -97928623 - MLT1D LTR MaLR -5 500 3 897 305 88 19 chr13 21816411 21817084 -97927814 + L2 LINE L2 2590 3308 -5 2161 98 3 3 chr13 21817116 21817425 -97927473 - AluSx SINE Alu 0 309 1 2129 70 0 0 chr13 21818443 21818702 -97926196 - AluY SINE Alu -15 296 38 2314 104 0 3 chr13 21818702 21819001 -97925897 - AluSg SINE Alu -12 298 1 406 259 79 44 chr13 21819736 21819964 -97924934 - L1MEd LINE L1 -4911 1208 973 225 233 0 0 chr13 21820326 21820369 -97924529 + L2 LINE L2 3230 3272 0 253 321 81 40 chr13 21820986 21821491 -97923407 + L1ME LINE L1 5357 5882 -239 442 291 108 22 chr13 21823013 21823236 -97921662 + MLT1K LTR MaLR 347 588 0 1139 298 155 40 chr13 21823454 21824721 -97920177 + L2 LINE L2 1892 3308 -5 2206 85 0 7 chr13 21824871 21825152 -97919746 + AluSq SINE Alu 1 279 -34 341 43 21 0 chr13 21825165 21825212 -97919686 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 2340 49 35 0 chr13 21825375 21825663 -97919235 - AluY SINE Alu -13 298 1 23 33 0 0 chr13 21827499 21827529 -97917369 + AT_rich Low_complexity Low_complexity 1 30 0 1948 116 4 0 chr13 21828091 21828358 -97916540 + AluSx SINE Alu 1 268 -44 447 276 138 16 chr13 21828502 21828748 -97916150 + HERVL LTR ERVL 2277 2552 -3102 840 256 47 47 chr13 21828829 21828948 -97915950 + HERVL LTR ERVL 2672 2790 -2206 1872 134 39 20 chr13 21828948 21829254 -97915644 + AluSx SINE Alu 1 312 0 840 256 47 47 chr13 21829254 21829454 -97915444 + HERVL LTR ERVL 2789 2991 -2005 461 305 18 12 chr13 21829595 21829863 -97915035 + HERVL LTR ERVL 3204 3396 -2258 906 335 95 15 chr13 21830058 21830882 -97914016 + HERVL LTR ERVL 3724 4613 -1041 1920 121 0 0 chr13 21832077 21832333 -97912565 + AluSc SINE Alu 1 256 -53 1132 137 197 9 chr13 21832382 21832696 -97912202 + MER65A LTR ERV1 1 445 0 490 247 52 0 chr13 21832697 21832851 -97912047 - LTR16A1 LTR ERVL 0 457 296 21 0 0 0 chr13 21833260 21833281 -97911617 + AT_rich Low_complexity Low_complexity 1 21 0 2340 94 3 0 chr13 21833601 21833899 -97910999 + AluSg SINE Alu 1 299 -11 357 280 87 40 chr13 21834323 21834473 -97910425 - MIR SINE MIR -26 236 80 22 0 0 0 chr13 21836369 21836391 -97908507 + AT_rich Low_complexity Low_complexity 1 22 0 182 79 0 53 chr13 21836777 21836815 -97908083 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr13 21837346 21837368 -97907530 + AT_rich Low_complexity Low_complexity 1 22 0 1236 171 0 9 chr13 21837475 21837697 -97907201 + L1PA15 LINE L1 5944 6163 -2 214 273 283 0 chr13 21838396 21838495 -97906403 - MIR3 SINE MIR -8 200 74 2289 103 0 23 chr13 21839688 21839998 -97904900 + AluSx SINE Alu 1 303 -9 3783 146 26 38 chr13 21840044 21840707 -97904191 - L1MA6 LINE L1 -14 6286 5632 1700 193 18 2 chr13 21840707 21841177 -97903721 + L1M2 LINE L1 2719 3198 -3650 655 298 41 17 chr13 21843364 21843656 -97901242 - HAL1 LINE L1 -723 1784 1486 24 103 0 0 chr13 21845116 21845203 -97899695 + AT_rich Low_complexity Low_complexity 1 87 0 2286 159 3 9 chr13 21845654 21845993 -97898905 + MER1B DNA MER1_type 1 337 0 206 353 104 6 chr13 21846139 21846312 -97898586 + MIR SINE MIR 20 209 -53 462 269 101 71 chr13 21847377 21847780 -97897118 + MLT1K LTR MaLR 146 588 0 408 40 0 0 chr13 21847816 21847866 -97897032 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 36 0 0 chr13 21847865 21847893 -97897005 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2223 77 4 0 chr13 21847894 21848167 -97896731 - AluSc SINE Alu -35 274 1 36 0 0 0 chr13 21848494 21848530 -97896368 + AT_rich Low_complexity Low_complexity 1 36 0 546 179 83 36 chr13 21848570 21848738 -97896160 - MER104 DNA MER2_type -3 177 2 365 309 73 61 chr13 21849095 21849341 -97895557 - L2 LINE L2 -28 3285 3037 7115 91 27 21 chr13 21849344 21849530 -97895368 + L1MA2 LINE L1 5148 5332 -972 2049 141 0 16 chr13 21849530 21849835 -97895063 + AluSx SINE Alu 1 300 -12 7115 91 27 21 chr13 21849835 21850787 -97894111 + L1MA2 LINE L1 5332 6296 -8 999 225 10 0 chr13 21850873 21851073 -97893825 + L1MCa LINE L1 19 220 -6206 1903 82 0 0 chr13 21851073 21851306 -97893592 + AluSc SINE Alu 1 233 -76 207 0 0 0 chr13 21851318 21851341 -97893557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1538 239 43 5 chr13 21851341 21851738 -97893160 + L1M4 LINE L1 3955 4366 -1780 2213 104 0 7 chr13 21851740 21852039 -97892859 + AluSx SINE Alu 1 297 -15 224 257 0 57 chr13 21852536 21852641 -97892257 + GA-rich Low_complexity Low_complexity 6 104 0 1222 143 38 5 chr13 21852865 21853075 -97891823 + MSTB1 LTR MaLR 192 408 -24 191 168 42 0 chr13 21853092 21853146 -97891752 + MIR SINE MIR 88 146 -62 1417 117 5 0 chr13 21854690 21854932 -97889966 - AluSg/x SINE Alu 0 327 85 2151 57 0 47 chr13 21854934 21855234 -97889664 - AluY SINE Alu -25 286 1 415 280 147 63 chr13 21856937 21857380 -97887518 + L1MB8 LINE L1 580 1059 -5899 1585 173 114 82 chr13 21858340 21858803 -97886095 - LTR12 LTR ERV1 -236 478 1 336 176 96 128 chr13 21859669 21859856 -97885042 - Charlie7 DNA MER1_type -6 2606 2426 836 150 0 0 chr13 21859865 21859998 -97884900 + AluSg/x SINE Alu 177 309 -3 284 276 13 26 chr13 21860001 21860077 -97884821 + L1M4 LINE L1 15 89 -6770 1074 40 0 0 chr13 21860143 21860269 -97884629 - AluY SINE Alu -9 302 177 5628 147 24 10 chr13 21860294 21861085 -97883813 - L1PB3 LINE L1 -39 6115 5337 2471 53 0 3 chr13 21861085 21861385 -97883513 - AluY SINE Alu -12 299 1 5628 147 24 10 chr13 21861385 21861865 -97883033 - L1PB3 LINE L1 -817 5337 4828 2055 87 42 3 chr13 21861865 21862153 -97882745 - AluY SINE Alu -12 299 1 5628 147 24 10 chr13 21862153 21862229 -97882669 - L1PB3 LINE L1 -1326 4828 4755 4930 240 59 43 chr13 21862247 21863695 -97881203 + L1M4 LINE L1 84 1555 -5304 356 0 23 0 chr13 21863783 21863827 -97881071 + (CA)n Simple_repeat Simple_repeat 2 46 0 2851 230 34 77 chr13 21863978 21864880 -97880018 + L1M4 LINE L1 3716 4556 -2401 734 101 10 0 chr13 21864880 21864979 -97879919 + HY3 scRNA scRNA 1 100 -1 2851 230 34 77 chr13 21864979 21865276 -97879622 + L1M4 LINE L1 4556 4864 -2093 461 219 42 8 chr13 21865286 21865405 -97879493 + L1MB8 LINE L1 3283 3405 -3552 329 150 0 0 chr13 21865409 21865469 -97879429 + L1P LINE L1 5369 5428 -728 2927 86 11 11 chr13 21865472 21865845 -97879053 + THE1C LTR MaLR 1 373 -2 3920 159 16 15 chr13 21865847 21866531 -97878367 + L1MA6 LINE L1 5615 6299 -1 2691 214 84 8 chr13 21866549 21867724 -97877174 + L1MB8 LINE L1 5437 6757 -238 582 184 21 35 chr13 21867727 21867868 -97877030 + L1MB8 LINE L1 6850 6988 -1 382 281 50 91 chr13 21868618 21868721 -97876177 + MIR SINE MIR 6 112 -150 2082 94 28 3 chr13 21868721 21869009 -97875889 - AluSp SINE Alu -16 297 3 382 281 50 91 chr13 21869009 21869147 -97875751 + MIR SINE MIR 112 237 -25 3491 111 108 89 chr13 21869396 21870159 -97874739 + LTR1 LTR ERV1 1 777 -8 346 274 56 111 chr13 21870817 21871051 -97873847 - MLT1I LTR MaLR -121 288 68 2242 79 3 14 chr13 21871793 21872119 -97872779 + AluSq SINE Alu 1 323 0 1537 116 30 67 chr13 21873694 21873962 -97870936 + AluY SINE Alu 41 298 -13 1063 138 25 0 chr13 21874158 21874318 -97870580 + AluY SINE Alu 1 164 -147 4049 150 65 5 chr13 21874319 21874964 -97869934 - LTR12 LTR ERV1 0 688 5 1827 201 63 53 chr13 21875008 21875591 -97869307 - pTR5 LTR ERV1 -1106 1332 744 984 115 0 7 chr13 21875591 21875739 -97869159 + AluY SINE Alu 161 307 -4 23 0 0 0 chr13 21875783 21875806 -97869092 + AT_rich Low_complexity Low_complexity 1 23 0 2110 111 17 0 chr13 21875837 21876134 -97868764 - AluSx SINE Alu 0 312 11 2373 86 0 0 chr13 21876146 21876447 -97868451 - AluY SINE Alu -10 301 1 2536 77 3 0 chr13 21877415 21877725 -97867173 + AluSx SINE Alu 1 311 -1 2492 62 0 7 chr13 21877952 21878259 -97866639 + AluY SINE Alu 1 305 -6 347 133 0 0 chr13 21878303 21878363 -97866535 - Alu SINE Alu 0 300 241 1960 97 0 0 chr13 21878625 21878873 -97866025 + AluSq SINE Alu 1 248 -65 232 236 163 65 chr13 21879145 21879268 -97865630 + MIR3 SINE MIR 40 174 -34 2260 90 7 0 chr13 21879680 21880317 -97864581 + AluSq SINE Alu 1 639 0 2419 105 0 0 chr13 21880320 21880624 -97864274 + AluSx SINE Alu 1 304 -8 184 116 163 23 chr13 21880667 21880710 -97864188 - L2 LINE L2 -5 3267 3219 2228 121 0 0 chr13 21881405 21881711 -97863187 - AluSq SINE Alu -7 306 1 2168 113 3 0 chr13 21882159 21882451 -97862447 + AluSq SINE Alu 9 301 -12 2211 109 0 7 chr13 21886799 21887103 -97857795 + AluSg SINE Alu 1 302 -8 213 39 0 0 chr13 21888762 21888788 -97856110 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 2120 108 42 0 chr13 21888927 21889213 -97855685 - AluSx SINE Alu -14 298 1 207 0 0 0 chr13 21889302 21889325 -97855573 + (TA)n Simple_repeat Simple_repeat 2 24 0 2481 71 10 0 chr13 21889724 21890032 -97854866 + AluY SINE Alu 1 311 0 180 0 0 0 chr13 21940953 21940973 -97803925 + (TTA)n Simple_repeat Simple_repeat 2 21 0 254 276 118 0 chr13 21942204 21942280 -97802618 + MIR SINE MIR 62 146 -62 230 268 93 31 chr13 21942845 21942942 -97801956 + MER91B DNA MER1_type 38 140 -50 215 320 27 0 chr13 21943121 21943196 -97801702 - L2 LINE L2 -5 3267 3191 221 125 21 21 chr13 21943268 21943316 -97801582 + (TA)n Simple_repeat Simple_repeat 1 48 0 1690 160 6 58 chr13 21943407 21943519 -97801379 + AluJo SINE Alu 1 117 -195 2145 138 3 0 chr13 21943519 21943817 -97801081 + AluSx SINE Alu 1 299 -13 1690 160 6 58 chr13 21943817 21944029 -97800869 + AluJo SINE Alu 117 308 -4 2917 185 9 30 chr13 21944399 21944957 -97799941 + MLT2B3 LTR ERVL 1 546 -8 2176 152 67 34 chr13 21945344 21945865 -97799033 + MLT2A2 LTR ERVL 1 552 -2 235 236 36 0 chr13 21945972 21946027 -97798871 + MIR SINE MIR 92 148 -114 2953 129 13 76 chr13 21946028 21946554 -97798344 + Tigger1 DNA MER2_type 2 494 -1924 4682 131 35 3 chr13 21946557 21947289 -97797609 + L1PA16 LINE L1 5387 6142 -24 3286 127 12 2 chr13 21947311 21947815 -97797083 + Tigger1 DNA MER2_type 480 988 -1430 1153 100 29 18 chr13 21947815 21947985 -97796913 + THE1C LTR MaLR 1 172 -203 672 248 7 26 chr13 21948007 21948160 -97796738 - MER45A DNA AcHobo -1 177 28 2434 96 3 0 chr13 21948391 21948703 -97796195 + AluSp SINE Alu 1 313 0 1072 129 17 11 chr13 21948703 21948881 -97796017 + AluSg/x SINE Alu 132 310 0 322 339 65 11 chr13 21949645 21949831 -97795067 + MIR SINE MIR 39 234 -28 192 286 0 0 chr13 21949995 21950044 -97794854 - MIR SINE MIR -10 252 204 203 247 137 14 chr13 21950653 21950726 -97794172 - MIR SINE MIR -57 205 124 371 127 27 136 chr13 21951313 21951423 -97793475 - MER53 DNA DNA -88 101 4 2048 121 0 0 chr13 21951578 21951859 -97793039 - AluSx SINE Alu -18 294 14 239 254 146 18 chr13 21952006 21952116 -97792782 + MIR SINE MIR 32 155 -107 2677 42 0 3 chr13 21952135 21952447 -97792451 + AluY SINE Alu 1 311 0 256 70 139 0 chr13 21952672 21952715 -97792183 - L1MB8 LINE L1 -3 6175 6127 290 208 7 78 chr13 21952987 21953140 -97791758 - MER4A LTR ERV1 -203 461 261 510 124 90 0 chr13 21953140 21953229 -97791669 - MER4A LTR ERV1 -566 98 2 2289 98 0 28 chr13 21955171 21955489 -97789409 - AluY SINE Alu -2 309 1 2343 104 13 0 chr13 21955676 21955984 -97788914 + AluSx SINE Alu 1 312 0 310 282 151 22 chr13 21957324 21957689 -97787209 - L1M4 LINE L1 -2881 3265 2854 266 247 39 0 chr13 21957976 21958053 -97786845 - L1M4 LINE L1 -3750 2396 2317 209 316 89 30 chr13 21958230 21958398 -97786500 - L2 LINE L2 -117 3196 3019 354 262 136 0 chr13 21958409 21958512 -97786386 - L2 LINE L2 -8 3305 3189 791 294 151 22 chr13 21958539 21959012 -97785886 - L2 LINE L2 -307 3006 2457 358 176 15 0 chr13 21959458 21959526 -97785372 + MLT2B3 LTR ERVL 3 71 -483 2009 160 134 46 chr13 21959625 21960057 -97784841 + MLT2B3 LTR ERVL 77 546 -8 385 281 69 44 chr13 21960148 21960237 -97784661 + ERVL LTR ERVL 5214 5310 -454 2466 126 28 11 chr13 21960237 21960595 -97784303 + THE1B LTR MaLR 1 364 0 385 281 69 44 chr13 21960595 21960665 -97784233 + ERVL LTR ERVL 5310 5377 -387 2352 214 105 2 chr13 21960954 21961468 -97783430 - MLT1F1 LTR MaLR 0 567 1 277 179 18 0 chr13 21961494 21961550 -97783348 + LTR67 LTR ERVL 6 62 -495 257 274 24 12 chr13 21961808 21961892 -97783006 + LTR67 LTR ERVL 433 517 -40 451 51 0 0 chr13 21961972 21962031 -97782867 - L1PA3 LINE L1 -1009 5137 5079 8262 18 1 0 chr13 21962031 21963034 -97781864 + L1PA3 LINE L1 5149 6152 -3 22 0 0 0 chr13 21963034 21963056 -97781842 + AT_rich Low_complexity Low_complexity 1 22 0 614 101 0 0 chr13 21963215 21963294 -97781604 + AluSg/x SINE Alu 218 296 -13 901 226 98 16 chr13 21963668 21963973 -97780925 - MLT2C1 LTR ERVL -6 391 62 23 54 0 0 chr13 21964118 21964155 -97780743 + AT_rich Low_complexity Low_complexity 1 37 0 312 235 67 123 chr13 21964544 21964723 -97780175 + MIR SINE MIR 6 174 -88 1841 168 42 81 chr13 21965033 21965439 -97779459 + MLT1B LTR MaLR 1 390 0 272 150 0 0 chr13 21965691 21965731 -97779167 - L1ME LINE L1 -431 5733 5694 1301 235 71 55 chr13 21965734 21966185 -97778713 + MER101 LTR ERV1 13 470 -4 1190 250 3 20 chr13 21966188 21966306 -97778592 - L1ME LINE L1 -470 5696 5578 2500 76 0 0 chr13 21966306 21966610 -97778288 + AluY SINE Alu 1 304 -7 1190 250 3 20 chr13 21966610 21966787 -97778111 - L1ME LINE L1 -588 5578 5406 2194 97 31 0 chr13 21966930 21967220 -97777678 - AluSx SINE Alu -13 299 1 4695 146 53 15 chr13 21967224 21968101 -97776797 - L1MC2 LINE L1 -236 6108 5198 800 241 111 26 chr13 21969214 21969521 -97775377 - L1MD3 LINE L1 0 7995 7715 2213 119 0 0 chr13 21969521 21969815 -97775083 - AluSx SINE Alu -18 294 1 800 241 111 26 chr13 21969815 21969875 -97775023 - L1MD3 LINE L1 -280 7715 5943 406 216 26 37 chr13 21969879 21970011 -97774887 - L1M2 LINE L1 -539 5627 5509 367 203 163 65 chr13 21970306 21970429 -97774469 + MIR SINE MIR 46 180 -82 256 272 193 9 chr13 21971569 21971683 -97773215 - MIR SINE MIR -117 145 11 1060 167 118 29 chr13 21971853 21972098 -97772800 + AluJo SINE Alu 38 304 -8 582 231 172 14 chr13 21972240 21972530 -97772368 + L1ME3 LINE L1 5149 5473 -691 2380 60 0 0 chr13 21972530 21972815 -97772083 + AluY SINE Alu 24 308 -3 721 263 52 73 chr13 21972826 21973073 -97771825 + L1ME3 LINE L1 5841 6081 -81 1533 171 90 31 chr13 21973073 21973395 -97771503 - MER2 DNA MER2_type -3 341 1 721 263 52 73 chr13 21973395 21973474 -97771424 + L1ME3 LINE L1 6081 6160 -2 679 296 98 22 chr13 21973699 21974313 -97770585 - L2 LINE L2 -30 3283 2524 2325 103 3 0 chr13 21974588 21974890 -97770008 - AluSx SINE Alu -9 303 1 1305 112 10 25 chr13 21974890 21975076 -97769822 + MER4B LTR ERV1 425 609 -1 274 303 25 33 chr13 21975155 21975277 -97769621 + MIR SINE MIR 92 212 -50 304 281 27 23 chr13 21976238 21976645 -97768253 - ALR/Alpha Satellite centromeric -41 408 1 2302 93 3 0 chr13 21976704 21977005 -97767893 - AluSp SINE Alu -11 302 1 432 256 20 20 chr13 21977072 21977282 -97767616 - ALR/Alpha Satellite centromeric 0 210 1 251 265 48 42 chr13 21977556 21977722 -97767176 - ALR/Alpha Satellite centromeric -5 167 1 352 257 42 41 chr13 21977831 21978461 -97766437 - ALR/Alpha Satellite centromeric 0 630 1 1055 41 0 0 chr13 21978468 21978590 -97766308 + AluY SINE Alu 178 299 -12 269 306 19 32 chr13 21978593 21978880 -97766018 - ALR/Alpha Satellite centromeric -5 283 1 3892 238 53 34 chr13 21979021 21980268 -97764630 - L1MEc LINE L1 -2679 3965 2743 2336 119 0 0 chr13 21980268 21980578 -97764320 - AluSg SINE Alu 0 310 1 3892 238 53 34 chr13 21980578 21980830 -97764068 - L1MEc LINE L1 -3901 2743 2465 1997 135 3 10 chr13 21980830 21981127 -97763771 + AluSx SINE Alu 1 295 -17 3892 238 53 34 chr13 21981127 21981151 -97763747 - L1MEc LINE L1 -4179 2465 2443 518 45 0 0 chr13 21981181 21981248 -97763650 - L1PB1 LINE L1 -1 6150 6084 2148 122 0 3 chr13 21981250 21981544 -97763354 - AluSx SINE Alu -10 302 10 416 170 160 10 chr13 21981551 21981651 -97763247 - LTR47A LTR ERVL -77 375 261 738 228 78 25 chr13 21981906 21982200 -97762698 - L1MEc LINE L1 -5159 1666 1169 270 331 122 17 chr13 21982197 21982378 -97762520 - L1MEc LINE L1 -6166 659 460 * 375 188 196 45 chr13 21982440 21982552 -97762346 + L2 LINE L2 3185 3313 0 2133 104 3 7 chr13 21983045 21983333 -97761565 - AluSq SINE Alu -13 300 14 435 294 64 64 chr13 21984098 21984593 -97760305 + L1M2 LINE L1 4915 5415 -780 2298 113 0 0 chr13 21984593 21984904 -97759994 + AluY SINE Alu 1 311 0 435 294 64 64 chr13 21984904 21984942 -97759956 + L1M2 LINE L1 5415 5452 -743 22 70 0 0 chr13 21986550 21986593 -97758305 + AT_rich Low_complexity Low_complexity 1 43 0 193 308 29 29 chr13 21986775 21986879 -97758019 - MIR SINE MIR -93 169 66 192 97 0 0 chr13 21988813 21988844 -97756054 + (CA)n Simple_repeat Simple_repeat 2 32 0 2027 130 33 0 chr13 21989586 21989885 -97755013 + AluSp SINE Alu 1 309 -4 2571 20 7 3 chr13 21989903 21990198 -97754700 + AluY SINE Alu 1 296 -15 2455 257 109 21 chr13 21990199 21991367 -97753531 + HAL1 LINE L1 1232 2502 -5 389 302 12 69 chr13 21992700 21992776 -97752122 - LTR33 LTR ERVL 0 521 442 2563 42 7 13 chr13 21992776 21993083 -97751815 - AluY SINE Alu -6 305 1 389 302 12 69 chr13 21993083 21993241 -97751657 - LTR33 LTR ERVL -79 442 295 2057 93 61 0 chr13 21993751 21994029 -97750869 - AluSc SINE Alu -14 295 1 2635 181 137 108 chr13 21994436 21994856 -97750042 + L1MC3 LINE L1 6662 7069 -716 368 247 11 0 chr13 21994856 21994945 -97749953 + MLT1F1 LTR MaLR 35 124 -443 2635 181 137 108 chr13 21994945 21995388 -97749510 + L1MC3 LINE L1 7069 7640 -145 1503 147 0 16 chr13 21996318 21996563 -97748335 + AluJo SINE Alu 60 300 -12 1984 99 53 11 chr13 21997008 21997292 -97747606 - AluSp SINE Alu -11 302 7 1066 98 0 0 chr13 21997300 21997432 -97747466 - AluSq/x SINE Alu -181 132 1 1743 241 67 30 chr13 21997550 21998210 -97746688 - L1MCc LINE L1 -5086 1337 654 262 176 20 0 chr13 21998314 21998365 -97746533 - MLT1A1 LTR MaLR -4 361 310 1704 187 10 0 chr13 21998367 21998661 -97746237 - AluJo SINE Alu -14 298 2 542 224 26 13 chr13 21998664 21998816 -97746082 - L1MCc LINE L1 -6246 177 24 1165 206 5 0 chr13 22001622 22001821 -97743077 + Tigger3(Golem) DNA MER2_type 1 200 -2829 242 276 60 35 chr13 22002659 22002788 -97742110 - MIR SINE MIR -66 142 21 301 242 96 107 chr13 22003339 22003517 -97741381 + Charlie8 DNA MER1_type 3 178 -2239 250 304 74 45 chr13 22003648 22003891 -97741007 + L2 LINE L2 1962 2211 -1103 210 280 65 19 chr13 22004187 22004294 -97740604 + L2 LINE L2 2290 2401 -913 2096 107 0 14 chr13 22004439 22004728 -97740170 - AluSx SINE Alu -7 305 21 369 274 248 0 chr13 22004898 22005051 -97739847 - MIR SINE MIR -44 218 28 985 185 16 11 chr13 22005999 22006183 -97738715 - AluJo SINE Alu -13 299 115 245 256 9 40 chr13 22007166 22007281 -97737617 + MIR SINE MIR 10 117 -91 985 208 23 32 chr13 22010800 22011021 -97733877 + MER20 DNA MER1_type 1 219 0 2224 117 0 3 chr13 22011894 22012202 -97732696 + AluSx SINE Alu 1 307 -5 481 280 35 55 chr13 22012281 22012481 -97732417 + MIR SINE MIR 1 196 -66 517 250 26 0 chr13 22012483 22012599 -97732299 + MER5A DNA MER1_type 1 119 -70 278 226 32 0 chr13 22012618 22012680 -97732218 + MIR SINE MIR 189 252 -10 1841 83 0 0 chr13 22012685 22012913 -97731985 + AluY SINE Alu 83 310 -1 2271 105 3 0 chr13 22013282 22013587 -97731311 + AluSc SINE Alu 1 306 -3 614 146 48 37 chr13 22013938 22014418 -97730480 + L1MC2 LINE L1 6142 6615 -1170 1963 156 78 23 chr13 22014418 22014764 -97730134 - MLT1A1 LTR MaLR 0 365 1 614 146 48 37 chr13 22014764 22014897 -97730001 + L1MC2 LINE L1 6615 7763 -22 390 21 0 0 chr13 22014929 22014976 -97729922 + (GA)n Simple_repeat Simple_repeat 2 48 0 810 262 41 22 chr13 22015460 22015727 -97729171 + MLT1L LTR MaLR 5 276 -339 4245 108 169 44 chr13 22015865 22016595 -97728303 + LTR12 LTR ERV1 5 825 -1 37223 86 8 8 chr13 22016596 22021574 -97723324 + HERV17 LTR ERV1 17 4954 -1960 632 131 214 16 chr13 22021567 22021819 -97723079 + HERV17 LTR ERV1 703 1141 -5755 * 7003 101 72 59 chr13 22021815 22024193 -97720705 + HERV17 LTR ERV1 504 2438 0 377 289 83 0 chr13 22024333 22024454 -97720444 + MLT1L LTR MaLR 483 613 -2 1697 108 0 12 chr13 22024783 22025024 -97719874 + AluSc SINE Alu 1 238 -71 218 225 0 0 chr13 22025035 22025075 -97719823 + polypurine Low_complexity Low_complexity 4 43 0 479 219 41 16 chr13 22025230 22025353 -97719545 - L1ME2 LINE L1 -21 6143 6018 810 260 44 14 chr13 22025432 22025734 -97719164 - L1ME2 LINE L1 -180 6482 6236 476 353 77 0 chr13 22025734 22026006 -97718892 - LTR16A LTR ERVL 0 450 158 3018 228 33 41 chr13 22026116 22026832 -97718066 - L1ME2 LINE L1 -420 6242 5536 1676 180 28 0 chr13 22026832 22027121 -97717777 - AluJo SINE Alu -14 298 2 3018 228 33 41 chr13 22027121 22027810 -97717088 - L1ME2 LINE L1 -1126 5536 4843 242 222 0 32 chr13 22027814 22027877 -97717021 + CT-rich Low_complexity Low_complexity 3 63 0 1708 259 27 13 chr13 22027893 22028419 -97716479 - L1ME2 LINE L1 -2040 4604 4072 1437 81 0 11 chr13 22028630 22028815 -97716083 - AluY SINE Alu -128 183 1 9468 205 47 67 chr13 22029191 22029249 -97715649 - L1MB7 LINE L1 -16 6562 6504 2149 119 7 0 chr13 22029249 22029544 -97715354 + AluSq SINE Alu 1 297 -16 9468 205 47 67 chr13 22029544 22030692 -97714206 - L1MB7 LINE L1 -74 6504 5335 834 197 0 14 chr13 22030692 22030834 -97714064 - FRAM SINE Alu -14 162 23 9468 205 47 67 chr13 22030834 22030986 -97713912 - L1MB7 LINE L1 -1243 5335 5181 1930 154 7 13 chr13 22030986 22031291 -97713607 + AluSq SINE Alu 1 303 -10 9468 205 47 67 chr13 22031291 22032999 -97711899 - L1MB7 LINE L1 -1397 5181 3441 2424 96 3 0 chr13 22032999 22033311 -97711587 - AluSp SINE Alu 0 313 1 2389 75 3 28 chr13 22033312 22033631 -97711267 - AluY SINE Alu 0 311 1 9468 205 47 67 chr13 22033631 22034464 -97710434 - L1MB7 LINE L1 -3136 3442 2606 23 0 0 0 chr13 22034524 22034547 -97710351 + AT_rich Low_complexity Low_complexity 1 23 0 6609 234 45 28 chr13 22034554 22035881 -97709017 - L1ME2 LINE L1 -3953 2691 1388 2067 145 38 30 chr13 22035881 22036253 -97708645 + THE1C LTR MaLR 1 375 0 6609 234 45 28 chr13 22036253 22037466 -97707432 - L1ME2 LINE L1 -5256 1388 10 545 87 0 0 chr13 22038034 22038103 -97706795 + AluSc SINE Alu 176 244 -65 6289 107 55 31 chr13 22038241 22038373 -97706525 - MER4-int LTR ERV1 -228 6370 6243 2920 9 0 3 chr13 22038373 22038692 -97706206 - AluYb8 SINE Alu 0 318 1 6289 107 55 31 chr13 22038692 22039612 -97705286 - MER4-int LTR ERV1 -355 6243 5290 2143 135 3 3 chr13 22039612 22039924 -97704974 + AluSx SINE Alu 1 312 0 2126 123 7 0 chr13 22040013 22040305 -97704593 - AluSx SINE Alu -18 294 1 670 266 85 86 chr13 22040412 22041142 -97703756 + HAL1 LINE L1 1012 1740 -767 2260 110 7 0 chr13 22041895 22042187 -97702711 + AluSx SINE Alu 1 294 -18 324 239 43 43 chr13 22042205 22042322 -97702576 + HAL1b LINE L1 795 911 -437 834 235 55 20 chr13 22042330 22042585 -97702313 + L1MB8 LINE L1 5915 6178 0 2492 71 0 0 chr13 22042600 22042894 -97702004 + AluY SINE Alu 1 294 -17 2021 98 35 7 chr13 22043819 22044002 -97700896 - AluSq SINE Alu 0 313 119 348 24 0 0 chr13 22044002 22044043 -97700855 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2021 98 35 7 chr13 22044043 22044165 -97700733 - AluSq SINE Alu -194 119 2 343 303 41 0 chr13 22045447 22045569 -97699329 - MIR SINE MIR -94 168 42 273 261 22 11 chr13 22045574 22045666 -97699232 + MIR SINE MIR 167 259 -3 2433 78 0 0 chr13 22045741 22046034 -97698864 + AluY SINE Alu 1 293 -18 364 252 52 22 chr13 22046666 22046801 -97698097 + MIR SINE MIR 122 260 -2 636 217 0 0 chr13 22047041 22047156 -97697742 + FLAM_C SINE Alu 2 116 -27 507 285 104 10 chr13 22048057 22048250 -97696648 + MIR SINE MIR 26 236 -26 1727 159 100 3 chr13 22048398 22048707 -97696191 - MER2 DNA MER2_type 0 345 7 2340 94 3 0 chr13 22048824 22049123 -97695775 + AluSx SINE Alu 1 300 -12 281 211 253 11 chr13 22049517 22049612 -97695286 + L2 LINE L2 3192 3309 -4 222 333 0 15 chr13 22049785 22049851 -97695047 - MIR SINE MIR -103 105 41 21 57 0 0 chr13 22051117 22051152 -97693746 + AT_rich Low_complexity Low_complexity 1 35 0 2546 66 0 0 chr13 22051175 22051476 -97693422 - AluY SINE Alu -10 301 1 263 214 9 98 chr13 22052129 22052241 -97692657 + MIR SINE MIR 79 180 -82 227 276 238 9 chr13 22052227 22052332 -97692566 - MIR3 SINE MIR -40 168 40 * 2391 77 3 3 chr13 22053543 22053842 -97691056 + AluY SINE Alu 1 299 -12 804 161 0 0 chr13 22054108 22054232 -97690666 - FRAM SINE Alu -16 160 37 1046 183 81 166 chr13 22054720 22055445 -97689453 - MER4A LTR ERV1 0 664 1 241 356 44 0 chr13 22055545 22055635 -97689263 - L2 LINE L2 -31 3241 3148 2356 93 3 0 chr13 22056438 22056729 -97688169 + AluSp SINE Alu 1 292 -21 1588 171 49 14 chr13 22057359 22057646 -97687252 + AluJo SINE Alu 1 297 -15 193 219 0 137 chr13 22057945 22058018 -97686880 - L2 LINE L2 -1 3312 3250 191 173 19 0 chr13 22058645 22058697 -97686201 + A-rich Low_complexity Low_complexity 2 54 0 258 32 0 0 chr13 22058775 22058806 -97686092 + (CA)n Simple_repeat Simple_repeat 2 32 0 296 155 3 0 chr13 22058890 22058939 -97685959 + AluS SINE Alu 23 64 -239 240 160 51 40 chr13 22059053 22059228 -97685670 + (CA)n Simple_repeat Simple_repeat 1 177 0 418 147 55 16 chr13 22059292 22059738 -97685160 + (CA)n Simple_repeat Simple_repeat 1 463 0 197 180 52 23 chr13 22060017 22060189 -97684709 + (CA)n Simple_repeat Simple_repeat 2 178 0 396 183 40 23 chr13 22060216 22060525 -97684373 + (CA)n Simple_repeat Simple_repeat 1 314 0 428 247 54 129 chr13 22060645 22061054 -97683844 - L1ME LINE L1 -415 5706 5317 339 121 17 0 chr13 22061080 22061138 -97683760 - AluSp/q SINE Alu -4 299 241 4665 165 45 49 chr13 22061241 22062297 -97682601 - L1 LINE L1 -1206 4940 3889 1670 137 27 57 chr13 22062299 22062599 -97682299 - AluSq SINE Alu -22 291 1 1543 197 10 10 chr13 22062602 22062912 -97681986 - AluJo SINE Alu -2 310 1 516 225 0 0 chr13 22064027 22064156 -97680742 + (TA)n Simple_repeat Simple_repeat 2 130 0 232 276 46 11 chr13 22064157 22064244 -97680654 + L1MC4 LINE L1 6614 6703 -1339 236 140 0 105 chr13 22064266 22064323 -97680575 + L1MC4 LINE L1 6652 6702 -1340 208 218 0 73 chr13 22064327 22064382 -97680516 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 253 253 0 63 chr13 22064382 22064477 -97680421 - L1MC4 LINE L1 -1339 6703 6615 192 40 0 0 chr13 22064485 22064510 -97680388 + (TG)n Simple_repeat Simple_repeat 2 26 0 2437 268 79 56 chr13 22064525 22065287 -97679611 + MLT-int LTR MaLR 581 1359 -376 2291 92 3 0 chr13 22065425 22065707 -97679191 + AluSp SINE Alu 6 288 -25 695 276 103 49 chr13 22065911 22066093 -97678805 - L2 LINE L2 -4 3309 3138 1544 180 48 45 chr13 22066093 22066404 -97678494 - AluJo SINE Alu 0 312 1 695 276 103 49 chr13 22066404 22066590 -97678308 - L2 LINE L2 -175 3138 2921 184 135 19 19 chr13 22066701 22066753 -97678145 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 678 259 4 98 chr13 22066861 22067050 -97677848 - MIR SINE MIR -10 252 92 1910 110 8 4 chr13 22067050 22067314 -97677584 + AluSx SINE Alu 21 285 -27 678 259 4 98 chr13 22067314 22067379 -97677519 - MIR SINE MIR -170 92 22 928 221 35 0 chr13 22067406 22067605 -97677293 - MER63A DNA MER1_type 0 210 5 316 289 75 23 chr13 22067790 22067963 -97676935 + MIR SINE MIR 2 183 -79 1217 175 185 9 chr13 22069791 22070074 -97674824 + L1MA5A LINE L1 5943 6287 -10 506 97 138 0 chr13 22070117 22070240 -97674658 + L1PA8 LINE L1 5991 6153 -1 457 295 29 6 chr13 22070324 22070497 -97674401 + L1MB3 LINE L1 6007 6183 0 204 320 0 13 chr13 22071203 22071278 -97673620 - MIR SINE MIR 0 262 189 652 210 120 30 chr13 22071282 22071449 -97673449 - AluJo SINE Alu -129 183 2 306 247 37 0 chr13 22071453 22071534 -97673364 - MIR SINE MIR -110 152 69 240 262 48 48 chr13 22071798 22071882 -97673016 + L2 LINE L2 3188 3271 -1 184 366 108 48 chr13 22073205 22073538 -97671360 + L3b LINE CR1 1146 1498 -85 13460 116 54 30 chr13 22074149 22074490 -97670408 - Tigger1 DNA MER2_type 0 2418 2087 2342 92 0 7 chr13 22074490 22074785 -97670113 + AluSx SINE Alu 1 293 -19 13460 116 54 30 chr13 22074785 22075744 -97669154 - Tigger1 DNA MER2_type -331 2087 1153 2381 77 3 7 chr13 22075744 22076044 -97668854 + AluSc SINE Alu 1 299 -10 13460 116 54 30 chr13 22076044 22076943 -97667955 - Tigger1 DNA MER2_type -1265 1153 165 260 250 0 0 chr13 22076916 22076964 -97667934 + AluJb SINE Alu 203 250 -52 * 1252 169 5 5 chr13 22076964 22077177 -97667721 + AluJo SINE Alu 85 297 -15 1167 144 0 21 chr13 22077187 22077375 -97667523 - Tigger1 DNA MER2_type -2213 205 22 354 231 88 27 chr13 22078335 22078482 -97666416 - MER45A DNA AcHobo -20 158 3 2651 18 0 0 chr13 22079543 22079851 -97665047 + AluY SINE Alu 1 308 0 183 80 0 0 chr13 22079850 22079875 -97665023 + (TA)n Simple_repeat Simple_repeat 2 26 0 761 259 20 51 chr13 22080098 22080453 -97664445 - L1M4 LINE L1 -885 5330 4987 3907 93 28 2 chr13 22080553 22081093 -97663805 + MER41A LTR ERV1 1 554 0 313 290 109 11 chr13 22081095 22081278 -97663620 - L1M4 LINE L1 -1369 4846 4646 3315 157 52 7 chr13 22081357 22081957 -97662941 - LTR24C LTR ERV1 -8 627 1 387 263 94 58 chr13 22081976 22082500 -97662398 - L1MEc LINE L1 -3655 2560 2049 2495 61 0 0 chr13 22082503 22082798 -97662100 - AluY SINE Alu -16 295 1 421 202 101 8 chr13 22082954 22083073 -97661825 - L1MA10 LINE L1 0 6334 6205 287 147 15 147 chr13 22083299 22083367 -97661531 - AluS SINE Alu -248 60 2 2142 121 0 0 chr13 22083827 22084107 -97660791 - AluSx SINE Alu -32 280 1 229 145 15 0 chr13 22084481 22084523 -97660375 + MIR3 SINE MIR 111 154 -54 2201 159 54 7 chr13 22084647 22085055 -97659843 - L1MB3 LINE L1 -8 6175 5749 180 319 0 14 chr13 22085322 22085391 -97659507 + MIR3 SINE MIR 12 79 -129 237 300 100 15 chr13 22085425 22085555 -97659343 + MIR SINE MIR 66 206 -56 6373 138 41 65 chr13 22085619 22086126 -97658772 - Tigger3b DNA MER2_type -1802 1226 708 2390 92 0 0 chr13 22086126 22086420 -97658478 - AluY SINE Alu -17 294 1 6373 138 41 65 chr13 22086420 22086825 -97658073 - Tigger3b DNA MER2_type -2320 708 350 2392 91 0 0 chr13 22086825 22087122 -97657776 - AluSx SINE Alu -14 298 2 6373 138 41 65 chr13 22087122 22087464 -97657434 - Tigger3b DNA MER2_type -2678 350 1 298 160 85 53 chr13 22087792 22087886 -97657012 - MER4C LTR ERV1 -2 463 367 4053 112 4 0 chr13 22087886 22088438 -97656460 - MER41A LTR ERV1 0 554 1 10627 109 33 24 chr13 22088438 22091498 -97653400 - MER41A-int LTR ERV1 -2 5944 2606 3954 141 61 21 chr13 22091470 22092168 -97652730 - MER41A-int LTR ERV1 -5313 633 1 * 4256 96 9 5 chr13 22092168 22092720 -97652178 - MER41A LTR ERV1 0 554 1 381 229 10 21 chr13 22092720 22092816 -97652082 - MER4C LTR ERV1 -95 370 276 * 434 228 79 78 chr13 22092806 22093125 -97651773 - MER4C LTR ERV1 -167 430 1 1468 185 14 20 chr13 22094542 22094834 -97650064 - AluJo SINE Alu -22 290 1 1303 113 128 93 chr13 22095735 22095992 -97648906 + AluSx SINE Alu 24 289 -23 29 0 0 0 chr13 22095992 22096021 -97648877 + AT_rich Low_complexity Low_complexity 1 29 0 1865 206 92 25 chr13 22096129 22096696 -97648202 + pTR5 LTR ERV1 741 1345 -1093 4724 117 92 47 chr13 22096711 22097498 -97647400 + LTR12 LTR ERV1 5 826 0 537 168 8 130 chr13 22098160 22098291 -97646607 - FLAM_A SINE Alu -20 122 8 822 93 0 70 chr13 22102615 22102744 -97642154 - FRAM SINE Alu -14 162 43 733 143 0 24 chr13 22104180 22104306 -97640592 + FRAM SINE Alu 49 171 -5 23 33 0 0 chr13 22105023 22105053 -97639845 + AT_rich Low_complexity Low_complexity 1 30 0 1476 161 4 11 chr13 22106678 22106939 -97637959 + L1MB3 LINE L1 5917 6175 -8 219 69 0 0 chr13 22107341 22107370 -97637528 + (TA)n Simple_repeat Simple_repeat 2 30 0 237 83 0 0 chr13 22107404 22107440 -97637458 + (CA)n Simple_repeat Simple_repeat 1 36 0 228 176 0 20 chr13 22107527 22107578 -97637320 + L1ME4a LINE L1 6072 6121 0 4459 206 70 38 chr13 22107815 22109014 -97635884 + L1MC4 LINE L1 6806 8042 0 1425 175 72 0 chr13 22109502 22109765 -97635133 + MER7A DNA MER2_type 2 281 -65 14345 165 20 3 chr13 22110132 22113444 -97631454 + L1PA14 LINE L1 2790 6157 -4 21 71 0 0 chr13 22113601 22113643 -97631255 + AT_rich Low_complexity Low_complexity 1 42 0 2550 141 47 30 chr13 22114411 22114687 -97630211 + Tigger2a DNA MER2_type 1 288 -2420 2275 99 3 0 chr13 22114687 22114990 -97629908 + AluSg SINE Alu 1 304 -6 2550 141 47 30 chr13 22114990 22115140 -97629758 + Tigger2a DNA MER2_type 288 434 0 270 260 213 7 chr13 22116086 22116236 -97628662 + MIR SINE MIR 2 182 -80 1382 181 22 53 chr13 22116568 22116639 -97628259 - MER33 DNA MER1_type -2274 311 239 774 199 122 0 chr13 22116639 22116795 -97628103 + FAM SINE Alu 1 175 0 1382 181 22 53 chr13 22116795 22117043 -97627855 - MER33 DNA MER1_type -2346 239 2 293 47 23 0 chr13 22118699 22118742 -97626156 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 248 323 30 42 chr13 22119671 22119790 -97625108 - MIR SINE MIR -62 146 23 454 243 64 55 chr13 22120690 22121105 -97623793 + L2 LINE L2 2230 3188 -125 277 272 112 24 chr13 22121379 22121548 -97623350 + MLT1J2 LTR MaLR 264 447 -3 293 278 156 0 chr13 22121564 22121654 -97623244 + L2 LINE L2 3210 3313 0 206 378 12 24 chr13 22122496 22122578 -97622320 - MIR SINE MIR -162 100 20 189 0 0 0 chr13 22122629 22122650 -97622248 + (A)n Simple_repeat Simple_repeat 1 21 0 2619 155 38 8 chr13 22123730 22124207 -97620691 - L1MB5 LINE L1 0 6174 5684 10628 205 25 18 chr13 22124460 22126800 -97618098 + L1MB4 LINE L1 2669 5038 -1142 1632 176 47 4 chr13 22126800 22127078 -97617820 + AluJo SINE Alu 1 290 -22 10628 205 25 18 chr13 22127078 22128229 -97616669 + L1MB4 LINE L1 5038 6180 0 1038 296 101 41 chr13 22128237 22128873 -97616025 - L2 LINE L2 -556 2758 2085 1975 138 10 0 chr13 22128989 22129279 -97615619 + AluSx SINE Alu 1 293 -19 2932 89 14 5 chr13 22129883 22130253 -97614645 - THE1C LTR MaLR 0 375 3 786 264 74 4 chr13 22131897 22132128 -97612770 + MIR SINE MIR 12 258 -4 1372 204 148 0 chr13 22132393 22132711 -97612187 + MER47A DNA MER2_type 2 366 0 2025 132 10 10 chr13 22132860 22133156 -97611742 + AluSx SINE Alu 1 296 -16 2174 133 0 10 chr13 22135078 22135380 -97609518 - AluSx SINE Alu -13 299 1 27 29 0 0 chr13 22137534 22137568 -97607330 + AT_rich Low_complexity Low_complexity 1 34 0 193 226 38 0 chr13 22137675 22137728 -97607170 + L2 LINE L2 2640 2694 -620 186 343 49 10 chr13 22137811 22137913 -97606985 + L2 LINE L2 2987 3092 -221 550 245 19 57 chr13 22138487 22138646 -97606252 + L1ME1 LINE L1 6031 6183 -1 21 82 0 0 chr13 22138658 22138707 -97606191 + AT_rich Low_complexity Low_complexity 1 49 0 2276 101 0 0 chr13 22138812 22139100 -97605798 + AluSx SINE Alu 1 288 -24 24 32 0 0 chr13 22139272 22139303 -97605595 + AT_rich Low_complexity Low_complexity 1 31 0 2249 125 0 0 chr13 22140613 22140924 -97603974 - AluSq SINE Alu -2 311 1 1502 163 98 14 chr13 22141102 22141378 -97603520 + AluJb SINE Alu 1 299 -13 22 35 0 0 chr13 22143339 22143368 -97601530 + AT_rich Low_complexity Low_complexity 1 29 0 2021 153 3 13 chr13 22144155 22144468 -97600430 - AluJb SINE Alu -2 310 1 290 304 39 10 chr13 22144794 22144896 -97600002 - MIR SINE MIR -120 142 38 216 158 0 0 chr13 22145685 22145723 -97599175 + (CATATA)n Simple_repeat Simple_repeat 6 43 0 324 0 0 0 chr13 22148267 22148303 -97596595 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr13 22148554 22148579 -97596319 + AT_rich Low_complexity Low_complexity 1 25 0 614 286 71 96 chr13 22148580 22148863 -97596035 + L1ME4a LINE L1 5380 5669 -452 2566 56 0 0 chr13 22148863 22149167 -97595731 + AluY SINE Alu 1 304 -7 614 286 71 96 chr13 22149167 22149439 -97595459 + L1ME4a LINE L1 5669 5939 -182 2368 87 0 3 chr13 22149439 22149737 -97595161 + AluSq SINE Alu 1 297 -16 614 286 71 96 chr13 22149737 22149844 -97595054 + L1ME4a LINE L1 5939 6047 -74 5128 159 69 33 chr13 22150150 22151544 -97593354 + L1MB2 LINE L1 4693 6170 -1 32 0 0 0 chr13 22152035 22152067 -97592831 + AT_rich Low_complexity Low_complexity 1 32 0 2043 110 3 23 chr13 22152068 22152368 -97592530 - AluSg SINE Alu -16 294 1 1559 150 8 26 chr13 22152524 22152791 -97592107 - AluJb SINE Alu -12 300 39 399 316 7 15 chr13 22153477 22153613 -97591285 + MIR SINE MIR 56 190 -72 558 292 22 15 chr13 22153811 22154016 -97590882 - MIR SINE MIR 0 262 56 4607 152 29 51 chr13 22154923 22155367 -97589531 - L1MB8 LINE L1 0 6178 5726 1413 152 105 99 chr13 22155367 22155729 -97589169 - MLT1A1 LTR MaLR 0 365 2 4607 152 29 51 chr13 22155729 22156394 -97588504 - L1MB8 LINE L1 -452 5726 5099 338 324 179 14 chr13 22156595 22156802 -97588096 + MIR SINE MIR 12 252 -10 626 290 63 90 chr13 22157224 22157612 -97587286 + L2 LINE L2 2817 3192 -121 2208 99 17 3 chr13 22157612 22157930 -97586968 + AluSp SINE Alu 1 322 0 626 290 63 90 chr13 22157930 22158049 -97586849 + L2 LINE L2 3192 3313 0 323 283 99 13 chr13 22158053 22158205 -97586693 - L1M LINE L1 -734 5428 5264 599 297 82 0 chr13 22159474 22159706 -97585192 - MIR SINE MIR -7 255 5 222 37 0 0 chr13 22159721 22159748 -97585150 + (TA)n Simple_repeat Simple_repeat 1 27 0 230 262 0 16 chr13 22160930 22160991 -97583907 + GA-rich Low_complexity Low_complexity 2 61 0 594 224 122 0 chr13 22161089 22161236 -97583662 + MIR SINE MIR 49 213 -49 251 225 12 38 chr13 22162529 22162609 -97582289 - L1MC/D LINE L1 -1907 5901 5824 184 224 122 0 chr13 22162620 22162669 -97582229 + L2 LINE L2 3169 3223 -49 1602 208 128 2 chr13 22162876 22163290 -97581608 + MER31B LTR ERV1 1 466 0 294 95 0 0 chr13 22163339 22163381 -97581517 + (TG)n Simple_repeat Simple_repeat 2 43 0 441 169 36 26 chr13 22165732 22165902 -97578996 - MER3 DNA MER1_type 0 209 6 468 258 88 25 chr13 22165970 22166129 -97578769 + MIR SINE MIR 59 227 -35 183 80 0 0 chr13 22167043 22167068 -97577830 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1986 122 4 0 chr13 22167068 22167339 -97577559 - AluSx SINE Alu -40 272 1 26 0 0 0 chr13 22168122 22168148 -97576750 + AT_rich Low_complexity Low_complexity 1 26 0 11448 200 68 17 chr13 22168369 22173433 -97571465 - L1MC1 LINE L1 -16 6597 1281 3811 184 144 4 chr13 22173462 22173952 -97570946 - L1MC1 LINE L1 -5465 961 541 185 0 0 39 chr13 22173952 22173978 -97570920 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3811 184 144 4 chr13 22173978 22174312 -97570586 - L1MC1 LINE L1 -5885 541 21 2733 100 65 105 chr13 22174548 22175178 -97569720 + MER4B LTR ERV1 3 779 0 1703 69 0 0 chr13 22176111 22176314 -97568584 - L1PA7 LINE L1 -18 6136 5934 22987 121 15 86 chr13 22176318 22180681 -97564217 - L1P LINE L1 -2079 4067 12 2296 112 0 3 chr13 22182469 22182774 -97562124 + AluSc SINE Alu 4 307 -2 253 224 41 61 chr13 22182888 22182986 -97561912 - L3b LINE CR1 -136 1447 1352 2063 147 0 22 chr13 22183001 22183320 -97561578 - AluSx SINE Alu 0 312 1 2298 103 3 0 chr13 22183856 22184158 -97560740 + AluSq SINE Alu 1 303 -10 24 0 0 0 chr13 22184491 22184515 -97560383 + AT_rich Low_complexity Low_complexity 1 24 0 866 171 91 6 chr13 22184747 22184923 -97559975 - MIR SINE MIR -28 234 44 302 256 78 0 chr13 22186094 22186184 -97558714 + MIR SINE MIR 130 226 -36 696 179 40 104 chr13 22186225 22186426 -97558472 + MIR SINE MIR 67 254 -8 231 287 96 17 chr13 22186625 22186740 -97558158 - MIR SINE MIR -21 241 118 200 231 31 108 chr13 22186952 22187017 -97557881 - L2 LINE L2 0 3272 3213 24 0 0 0 chr13 22187252 22187276 -97557622 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr13 22187289 22187315 -97557583 + AT_rich Low_complexity Low_complexity 1 26 0 416 334 46 90 chr13 22187630 22188174 -97556724 + L2 LINE L2 2684 3271 -1 53 49 0 0 chr13 22190879 22190960 -97553938 + AT_rich Low_complexity Low_complexity 1 81 0 261 266 32 53 chr13 22191817 22191911 -97552987 + MIR3 SINE MIR 63 154 -54 252 263 0 62 chr13 22193026 22193106 -97551792 - L2 LINE L2 -12 3260 3186 961 167 25 20 chr13 22193310 22193508 -97551390 - L1MB2 LINE L1 -9 6162 5964 1773 159 42 88 chr13 22193507 22193787 -97551111 - MER47A DNA MER2_type -1957 366 107 2129 97 100 60 chr13 22193787 22194137 -97550761 - THE1B LTR MaLR 0 364 1 1773 159 42 88 chr13 22194137 22194240 -97550658 - MER47A DNA MER2_type -2216 107 1 2474 130 46 30 chr13 22194240 22194679 -97550219 - L1MB2 LINE L1 -217 5966 5521 1577 268 136 23 chr13 22194712 22195123 -97549775 - L1MC2 LINE L1 -17 8025 7662 2204 169 5 23 chr13 22195123 22195520 -97549378 - MLT1B LTR MaLR 0 390 1 1577 268 136 23 chr13 22195520 22195834 -97549064 - L1MC2 LINE L1 -380 7662 6254 396 302 191 31 chr13 22196091 22196316 -97548582 - MIR SINE MIR 0 262 2 313 285 120 48 chr13 22196839 22197003 -97547895 - MIR SINE MIR -61 147 5 613 268 68 0 chr13 22197139 22197344 -97547554 + MIR SINE MIR 44 262 0 263 189 105 102 chr13 22197643 22197848 -97547050 - MLT1I LTR MaLR -214 335 98 446 258 39 16 chr13 22198088 22198216 -97546682 + MER94 DNA DNA 1 131 -3 574 352 86 12 chr13 22198254 22198581 -97546317 + L3 LINE CR1 983 1333 -244 505 257 51 2 chr13 22198587 22198750 -97546148 + MIR SINE MIR 19 192 -68 1378 215 11 57 chr13 22198759 22198803 -97546095 - MLT2B3 LTR ERVL -1 553 509 423 0 0 0 chr13 22198803 22198850 -97546048 + (TG)n Simple_repeat Simple_repeat 2 48 0 1378 215 11 57 chr13 22198850 22199158 -97545740 - MLT2B3 LTR ERVL -45 509 217 542 167 9 0 chr13 22199158 22199266 -97545632 + GA-rich Low_complexity Low_complexity 1 109 0 1122 134 76 54 chr13 22199266 22199490 -97545408 - MLT2B2 LTR ERVL -285 230 2 543 277 36 54 chr13 22200018 22200242 -97544656 - MER102b DNA MER1_type -45 296 77 2216 101 0 3 chr13 22200497 22200793 -97544105 - AluSx SINE Alu -17 295 1 540 224 255 19 chr13 22201094 22201255 -97543643 + MER63A DNA MER1_type 12 210 0 389 250 53 88 chr13 22202194 22202353 -97542545 + MER87 LTR ERV1 1 148 -393 777 239 98 77 chr13 22202476 22202945 -97541953 + LTR26 LTR ERV1 115 593 -10 1797 133 25 3 chr13 22202976 22203262 -97541636 + AluSx SINE Alu 1 292 -20 231 313 42 10 chr13 22203338 22203434 -97541464 + L2 LINE L2 3215 3313 0 441 304 77 14 chr13 22203932 22204139 -97540759 - MIR SINE MIR -19 243 24 2658 215 16 23 chr13 22204538 22205096 -97539802 + MLT2B3 LTR ERVL 1 554 0 250 323 55 81 chr13 22205915 22206150 -97538748 + L2 LINE L2 3037 3265 -7 2071 74 0 4 chr13 22206201 22206471 -97538427 + AluY SINE Alu 36 304 -7 2013 138 0 3 chr13 22206489 22206794 -97538104 + AluSx SINE Alu 3 306 -6 2005 126 13 3 chr13 22206794 22207096 -97537802 + AluSq SINE Alu 1 305 -8 198 326 12 23 chr13 22207438 22207524 -97537374 - MIR SINE MIR -43 219 135 1652 166 7 0 chr13 22211216 22211512 -97533386 + AluSx SINE Alu 1 298 -14 509 318 104 33 chr13 22211797 22211941 -97532957 - L1M4 LINE L1 -832 5314 5182 1788 150 27 0 chr13 22211941 22212234 -97532664 - AluJo SINE Alu -11 301 1 509 318 104 33 chr13 22212234 22212667 -97532231 - L1M4 LINE L1 -964 5182 4696 382 233 90 65 chr13 22212710 22212989 -97531909 - L1M4 LINE L1 -1538 4608 4323 1998 113 17 0 chr13 22213252 22213543 -97531355 - AluSq SINE Alu -15 298 3 468 202 52 88 chr13 22213551 22213734 -97531164 - L1M4 LINE L1 -2884 3262 3091 2026 97 3 7 chr13 22213734 22214023 -97530875 - AluSx SINE Alu -24 288 1 468 202 52 88 chr13 22214023 22214111 -97530787 - L1M4 LINE L1 -3055 3091 3001 804 227 92 14 chr13 22214111 22214393 -97530505 - MER113 DNA MER1_type? -190 331 28 2256 61 41 0 chr13 22215387 22215680 -97529218 - AluY SINE Alu -6 305 1 287 263 120 38 chr13 22215753 22215886 -97529012 + Charlie8 DNA MER1_type 138 281 -2136 26 0 0 0 chr13 22217023 22217049 -97527849 + AT_rich Low_complexity Low_complexity 1 26 0 3872 93 8 0 chr13 22217058 22217586 -97527312 + L1PB1 LINE L1 5620 6151 0 2206 255 46 28 chr13 22218359 22219113 -97525785 + L1ME1 LINE L1 5393 6160 -6 611 152 27 0 chr13 22219132 22219244 -97525654 - L1MA5 LINE L1 -6 6294 6180 2314 43 0 65 chr13 22219246 22219569 -97525329 - AluY SINE Alu -9 302 1 2317 52 0 58 chr13 22220222 22220552 -97524346 + AluY SINE Alu 1 311 0 23 0 0 0 chr13 22221625 22221648 -97523250 + GC_rich Low_complexity Low_complexity 1 23 0 197 227 0 0 chr13 22223004 22223048 -97521850 + L2 LINE L2 3270 3313 0 645 174 91 0 chr13 22224429 22224550 -97520348 + AluJ SINE Alu 2 133 -169 209 159 23 0 chr13 22224577 22224621 -97520277 + GA-rich Low_complexity Low_complexity 1 45 0 1976 88 63 0 chr13 22224635 22224920 -97519978 + AluSq SINE Alu 1 303 -10 929 169 7 0 chr13 22224920 22225074 -97519824 + AluJ SINE Alu 134 288 -24 208 337 48 12 chr13 22225117 22225200 -97519698 - L2 LINE L2 -5 3308 3223 21 0 0 0 chr13 22225609 22225630 -97519268 + AT_rich Low_complexity Low_complexity 1 21 0 2746 164 71 9 chr13 22225630 22226178 -97518720 - L1MB3 LINE L1 -1 6182 5601 235 239 11 68 chr13 22226844 22226932 -97517966 + (CCCA)n Simple_repeat Simple_repeat 2 84 0 188 267 78 44 chr13 22226934 22227024 -97517874 - L2 LINE L2 -16 3256 3164 345 62 0 0 chr13 22227796 22227844 -97517054 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr13 22227872 22227901 -97516997 + AT_rich Low_complexity Low_complexity 1 29 0 409 231 52 23 chr13 22228120 22228331 -97516567 + Charlie7 DNA MER1_type 2317 2612 0 218 269 0 30 chr13 22228375 22228442 -97516456 + G-rich Low_complexity Low_complexity 4 68 0 725 238 168 43 chr13 22229583 22229813 -97515085 - MER58B DNA MER1_type -2079 341 63 1752 169 10 7 chr13 22229813 22230121 -97514777 + AluJo SINE Alu 1 309 -3 725 238 168 43 chr13 22230121 22230193 -97514705 - MER58B DNA MER1_type -2357 63 1 367 346 82 0 chr13 22230340 22230522 -97514376 - MIR SINE MIR -52 210 14 1763 178 0 0 chr13 22230912 22231210 -97513688 - AluJb SINE Alu -14 298 1 755 180 0 0 chr13 22231246 22231374 -97513524 - FLAM_C SINE Alu -3 130 3 436 117 59 3 chr13 22232744 22232829 -97512069 - L1PA8 LINE L1 -2 6172 6085 769 239 188 35 chr13 22233127 22233525 -97511373 - MLT1C LTR MaLR -3 464 6 1483 200 51 34 chr13 22233526 22233881 -97511017 - MLT1C-int LTR MaLR -1 1370 1010 24 0 0 0 chr13 22234446 22234470 -97510428 + GC_rich Low_complexity Low_complexity 1 24 0 181 326 132 23 chr13 22236053 22236182 -97508716 - L2 LINE L2 -20 3293 3151 407 344 78 9 chr13 22236192 22236410 -97508488 + MIR SINE MIR 20 252 -10 312 316 85 17 chr13 22236640 22236817 -97508081 - MIR SINE MIR 0 262 74 204 97 0 0 chr13 22236862 22236893 -97508005 + (TA)n Simple_repeat Simple_repeat 2 32 0 842 137 0 0 chr13 22237781 22237912 -97506986 - FLAM_C SINE Alu -1 142 12 1609 181 52 6 chr13 22238299 22238625 -97506273 - MER2 DNA MER2_type -2 342 2 1235 104 6 0 chr13 22239797 22239980 -97504918 + AluY SINE Alu 125 308 -3 281 223 107 27 chr13 22240529 22240641 -97504257 + MIR SINE MIR 87 207 -55 254 326 70 0 chr13 22242220 22242306 -97502592 - MIR SINE MIR -150 112 21 1067 167 0 36 chr13 22242329 22242521 -97502377 + AluJb SINE Alu 123 307 -5 186 43 0 0 chr13 22242522 22242545 -97502353 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 888 279 152 0 chr13 22242833 22243156 -97501742 + L2 LINE L2 2923 3294 -19 23 33 0 0 chr13 22244074 22244104 -97500794 + AT_rich Low_complexity Low_complexity 1 30 0 324 226 96 26 chr13 22244436 22244551 -97500347 - MER103 DNA DNA -1 165 43 293 285 71 52 chr13 22244800 22245168 -97499730 + L1 LINE L1 4575 4949 -1197 23 33 0 0 chr13 22245181 22245211 -97499687 + AT_rich Low_complexity Low_complexity 1 30 0 304 224 0 126 chr13 22245352 22245526 -97499372 + L1 LINE L1 5222 5373 -773 304 316 53 0 chr13 22245633 22245747 -97499151 + MIR SINE MIR 109 228 -34 533 209 143 33 chr13 22246064 22246274 -97498624 + L1ME4a LINE L1 5807 6039 -82 315 0 0 0 chr13 22246839 22246874 -97498024 + (TG)n Simple_repeat Simple_repeat 2 36 0 321 212 156 56 chr13 22247454 22247580 -97497318 - MIR3 SINE MIR -1 207 69 213 185 46 46 chr13 22248340 22248405 -97496493 - MIR SINE MIR -55 207 143 619 83 12 12 chr13 22249365 22249449 -97495449 - AluS SINE Alu -228 85 2 822 167 43 0 chr13 22250598 22250736 -97494162 - FRAM SINE Alu -29 147 4 2335 105 0 0 chr13 22250801 22251106 -97493792 - AluSx SINE Alu -6 306 2 33 90 0 0 chr13 22251233 22251322 -97493576 + AT_rich Low_complexity Low_complexity 1 89 0 223 322 42 42 chr13 22253304 22253447 -97491451 + L2 LINE L2 2902 3044 -228 38 0 0 0 chr13 22253670 22253708 -97491190 + AT_rich Low_complexity Low_complexity 1 38 0 211 281 67 11 chr13 22253719 22253808 -97491090 - MIR SINE MIR -51 211 118 1659 268 180 23 chr13 22253931 22255171 -97489727 - L2 LINE L2 -1 3312 1891 2235 111 0 3 chr13 22255659 22255957 -97488941 + AluSx SINE Alu 1 297 -15 2023 130 0 14 chr13 22256877 22257170 -97487728 - AluSx SINE Alu -13 299 11 2226 95 113 9 chr13 22257963 22258290 -97486608 - MER46B DNA MER2_type 0 236 1 970 133 27 0 chr13 22260519 22260669 -97484229 + MER5A DNA MER1_type 1 154 -35 185 0 40 0 chr13 22260937 22260962 -97483936 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 230 347 45 40 chr13 22260963 22261139 -97483759 + L2 LINE L2 2682 2858 -456 231 350 65 24 chr13 22261328 22261451 -97483447 + L2 LINE L2 2960 3087 -185 213 323 0 0 chr13 22261829 22261894 -97483004 - MIR SINE MIR -3 259 195 524 244 7 30 chr13 22261919 22262054 -97482844 - L2 LINE L2 -1 3312 3181 250 240 0 0 chr13 22262049 22262099 -97482799 - MIR SINE MIR -200 62 13 * 463 70 14 0 chr13 22263130 22263201 -97481697 - AluSc SINE Alu -2 307 236 1204 180 0 42 chr13 22264022 22264261 -97480637 - AluJo SINE Alu 0 312 84 44 84 0 0 chr13 22264602 22264709 -97480189 + AT_rich Low_complexity Low_complexity 1 107 0 527 164 52 124 chr13 22264918 22265195 -97479703 + MER66A LTR ERV1 163 304 -174 32 26 0 0 chr13 22266444 22266483 -97478415 + AT_rich Low_complexity Low_complexity 1 39 0 2292 125 0 0 chr13 22266707 22267019 -97477879 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 22267241 22267262 -97477636 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 22267420 22267440 -97477458 + (A)n Simple_repeat Simple_repeat 1 20 0 1231 56 0 0 chr13 22267443 22267585 -97477313 - AluY SINE Alu -169 142 1 198 191 0 0 chr13 22267649 22267691 -97477207 + CT-rich Low_complexity Low_complexity 4 45 0 2418 42 0 51 chr13 22268118 22268430 -97476468 + AluY SINE Alu 1 296 -15 249 246 35 0 chr13 22269880 22269937 -97474961 - L2 LINE L2 -3 3269 3211 34 84 0 0 chr13 22270007 22270090 -97474808 + AT_rich Low_complexity Low_complexity 1 83 0 2193 109 17 0 chr13 22271083 22271376 -97473522 - AluSx SINE Alu -14 298 1 981 186 25 0 chr13 22271943 22272104 -97472794 - FAM SINE Alu -9 166 2 1647 169 20 10 chr13 22272120 22272416 -97472482 + AluJb SINE Alu 2 300 -12 1847 168 0 3 chr13 22273583 22273887 -97471011 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr13 22274045 22274068 -97470830 + AT_rich Low_complexity Low_complexity 1 23 0 1049 172 78 5 chr13 22274130 22274334 -97470564 - L1PA6 LINE L1 -25 6129 5911 1036 125 0 36 chr13 22274475 22274641 -97470257 + MER4B LTR ERV1 362 521 -89 3568 100 8 60 chr13 22274641 22275283 -97469615 + MER4B LTR ERV1 1 779 0 472 63 16 0 chr13 22275284 22275347 -97469551 + MER4B LTR ERV1 547 610 0 180 0 0 0 chr13 22276021 22276041 -97468857 + (TC)n Simple_repeat Simple_repeat 1 20 0 351 319 49 16 chr13 22276756 22276841 -97468057 - MIR SINE MIR -58 204 123 1730 161 3 42 chr13 22276841 22277152 -97467746 + AluSx SINE Alu 1 299 -13 351 319 49 16 chr13 22277152 22277251 -97467647 - MIR SINE MIR -139 123 14 195 318 111 32 chr13 22284301 22284518 -97460380 + L2 LINE L2 2862 3095 -177 352 215 26 23 chr13 22284604 22284719 -97460179 - L1MC/D LINE L1 -684 5470 5369 870 280 52 0 chr13 22284889 22285175 -97459723 + L1ME1 LINE L1 29 329 -6067 2899 211 49 40 chr13 22285211 22285497 -97459401 + L1ME1 LINE L1 4566 4848 -1387 2158 127 0 3 chr13 22285497 22285796 -97459102 + AluSx SINE Alu 1 298 -14 2899 211 49 40 chr13 22285796 22286772 -97458126 + L1ME1 LINE L1 4848 5836 -399 2385 161 33 0 chr13 22286790 22287188 -97457710 + MSTB LTR MaLR 16 426 0 867 226 134 24 chr13 22287188 22287516 -97457382 + L1ME1 LINE L1 5867 6230 -5 605 199 41 23 chr13 22287783 22287954 -97456944 + MLT1D LTR MaLR 134 307 -198 1821 179 22 44 chr13 22287954 22288362 -97456536 + MER57A LTR ERV1 1 399 -4 660 188 171 0 chr13 22288456 22288626 -97456272 + MLT1D LTR MaLR 304 502 -3 1011 200 44 5 chr13 22289583 22289788 -97455110 - MER20 DNA MER1_type 0 219 7 196 248 128 46 chr13 22290265 22290374 -97454524 - L3 LINE CR1 -193 1384 1267 204 40 0 0 chr13 22290725 22290750 -97454148 + (A)n Simple_repeat Simple_repeat 1 25 0 189 178 111 0 chr13 22291344 22291389 -97453509 - MIR SINE MIR -107 101 52 260 234 47 0 chr13 22291795 22291859 -97453039 - MIR SINE MIR 0 262 196 453 237 69 58 chr13 22291961 22292134 -97452764 + MER69A DNA AcHobo 3 177 0 547 237 39 77 chr13 22292168 22292375 -97452523 + MLT1J1 LTR MaLR 248 446 0 219 214 200 0 chr13 22292425 22292495 -97452403 - MIR SINE MIR -84 124 41 219 300 40 10 chr13 22292601 22292701 -97452197 + MIR SINE MIR 112 214 -48 310 352 93 42 chr13 22293820 22294546 -97450352 - L2 LINE L2 -2 3270 2519 2244 180 8 0 chr13 22294557 22294919 -97449979 - MLT1A1 LTR MaLR 0 365 1 2222 102 0 7 chr13 22295185 22295479 -97449419 - AluSc SINE Alu -17 292 1 767 316 128 9 chr13 22295787 22296242 -97448656 + L1MC1 LINE L1 5296 5804 -2004 2113 165 69 17 chr13 22296269 22296374 -97448524 + L1MB3 LINE L1 5725 5823 -360 2070 138 0 10 chr13 22296374 22296685 -97448213 + AluSx SINE Alu 1 308 -4 2113 165 69 17 chr13 22296685 22296985 -97447913 + L1MB3 LINE L1 5823 6151 -32 279 118 39 20 chr13 22297544 22297595 -97447303 + MER66A LTR ERV1 287 338 -140 405 0 0 0 chr13 22297595 22297640 -97447258 + (CA)n Simple_repeat Simple_repeat 2 46 0 231 368 157 8 chr13 22300183 22300425 -97444473 + L3b LINE CR1 1204 1481 -102 355 278 66 91 chr13 22302127 22302325 -97442573 + MIR SINE MIR 15 207 -55 462 245 25 80 chr13 22302330 22302493 -97442405 + L1MEd LINE L1 92 245 -5960 1395 195 44 13 chr13 22302827 22303048 -97441850 + L1MC1 LINE L1 6009 6222 -122 429 109 0 0 chr13 22303048 22303112 -97441786 + (TG)n Simple_repeat Simple_repeat 2 65 0 1395 195 44 13 chr13 22303112 22303171 -97441727 + L1MC1 LINE L1 6222 6278 -66 2816 66 3 21 chr13 22303171 22303548 -97441350 + L1PA13 LINE L1 5792 6161 -2 1395 195 44 13 chr13 22303548 22303608 -97441290 + L1MC1 LINE L1 6278 6344 0 380 127 28 0 chr13 22303647 22303718 -97441180 + MER53 DNA DNA 117 189 0 701 305 47 72 chr13 22303720 22303937 -97440961 + L1MEd LINE L1 546 767 -5438 734 194 8 8 chr13 22303937 22304061 -97440837 + FLAM_A SINE Alu 1 124 -9 701 305 47 72 chr13 22304061 22304413 -97440485 + L1MEd LINE L1 767 1101 -5104 305 263 144 54 chr13 22304501 22304960 -97439938 + L1MEd LINE L1 1311 1705 -871 22 94 0 0 chr13 22305099 22305163 -97439735 + AT_rich Low_complexity Low_complexity 1 64 0 494 281 56 6 chr13 22305319 22305479 -97439419 - MIR SINE MIR -21 241 74 396 231 69 43 chr13 22305490 22305727 -97439171 + L1ME3A LINE L1 3087 3333 -2882 2437 83 0 16 chr13 22305727 22306040 -97438858 + AluSg SINE Alu 1 308 -2 396 231 69 43 chr13 22306040 22306079 -97438819 + L1ME3A LINE L1 3333 3370 -2845 2307 72 0 75 chr13 22306258 22306591 -97438307 + AluY SINE Alu 1 308 -3 1023 275 95 32 chr13 22306843 22307094 -97437804 + L1ME3A LINE L1 5092 5326 -905 1930 119 19 0 chr13 22307094 22307362 -97437536 + AluSg SINE Alu 38 310 0 1023 275 95 32 chr13 22307362 22307893 -97437005 + L1ME3A LINE L1 5326 5919 -312 249 57 0 0 chr13 22308191 22308226 -97436672 + (TA)n Simple_repeat Simple_repeat 2 36 0 727 159 0 40 chr13 22308257 22308383 -97436515 - FLAM_A SINE Alu -12 121 1 24 53 0 0 chr13 22308439 22308477 -97436421 + AT_rich Low_complexity Low_complexity 1 38 0 477 50 0 0 chr13 22308768 22308828 -97436070 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 1685 204 86 53 chr13 22309214 22309703 -97435195 - MLT1D LTR MaLR 0 505 1 2736 94 25 0 chr13 22309858 22310220 -97434678 + L1PA6 LINE L1 5784 6154 0 466 202 126 0 chr13 22310525 22310644 -97434254 + Charlie5 DNA MER1_type 2424 2557 -55 220 379 152 7 chr13 22310819 22311233 -97433665 + L2 LINE L2 2481 2954 -360 478 223 0 0 chr13 22311640 22311743 -97433155 + L1MA9 LINE L1 6173 6275 -37 1064 234 62 34 chr13 22312282 22312670 -97432228 + L1M4 LINE L1 4187 4585 -1561 * 14012 192 36 14 chr13 22312647 22317633 -97427265 - L1PA16 LINE L1 -9 6860 1750 2270 111 0 10 chr13 22317633 22317939 -97426959 - AluSp SINE Alu -10 303 1 14012 192 36 14 chr13 22317939 22318350 -97426548 - L1PA16 LINE L1 -5119 1750 1349 373 147 37 110 chr13 22319085 22319194 -97425704 + L1M3 LINE L1 5679 5779 -399 2427 67 0 0 chr13 22319201 22319501 -97425397 + AluY SINE Alu 1 300 -11 1476 204 71 12 chr13 22319713 22320051 -97424847 + MER47A DNA MER2_type 9 366 0 2108 147 46 11 chr13 22320058 22320405 -97424493 + MER46B DNA MER2_type 3 236 0 896 217 21 5 chr13 22320992 22321181 -97423717 + MER58A DNA MER1_type 30 221 -3 233 278 0 0 chr13 22322206 22322278 -97422620 + CT-rich Low_complexity Low_complexity 3 74 0 337 211 10 10 chr13 22322318 22322422 -97422476 + CT-rich Low_complexity Low_complexity 2 105 0 391 246 36 169 chr13 22322663 22322911 -97421987 + MIR SINE MIR 37 251 -11 21 0 0 0 chr13 22322940 22322961 -97421937 + AT_rich Low_complexity Low_complexity 1 21 0 1577 169 64 0 chr13 22323991 22324286 -97420612 + L1MB8 LINE L1 5653 5966 -212 735 184 19 25 chr13 22324287 22324445 -97420453 + L1MB8 LINE L1 6021 6177 -1 918 216 0 0 chr13 22324484 22324660 -97420238 - AluJb SINE Alu 0 312 137 23 0 0 0 chr13 22324733 22324756 -97420142 + AT_rich Low_complexity Low_complexity 1 23 0 2205 94 0 19 chr13 22325360 22325668 -97419230 - AluSc SINE Alu -7 302 1 332 273 182 0 chr13 22326119 22326251 -97418647 + L2 LINE L2 2712 2867 -447 25 0 0 0 chr13 22326596 22326621 -97418277 + AT_rich Low_complexity Low_complexity 1 25 0 2060 170 80 18 chr13 22326716 22327115 -97417783 + MSTB LTR MaLR 1 424 -2 3096 181 27 9 chr13 22327609 22328161 -97416737 + MER68 LTR ERV1 1 562 0 883 210 19 12 chr13 22328507 22328669 -97416229 + FAM SINE Alu 1 163 -12 22 0 0 0 chr13 22328671 22328693 -97416205 + AT_rich Low_complexity Low_complexity 1 22 0 441 169 45 11 chr13 22332302 22332391 -97412507 - MLT1J LTR MaLR 0 511 420 706 225 66 44 chr13 22332528 22332755 -97412143 - MLT1J LTR MaLR -267 244 13 23 54 0 0 chr13 22333209 22333246 -97411652 + AT_rich Low_complexity Low_complexity 1 37 0 2440 150 92 9 chr13 22333562 22334010 -97410888 + MER31A LTR ERV1 1 485 0 21 0 0 0 chr13 22334650 22334671 -97410227 + AT_rich Low_complexity Low_complexity 1 21 0 270 250 53 0 chr13 22336125 22336201 -97408697 - MLT1G LTR MaLR -13 577 498 474 270 101 30 chr13 22336316 22336583 -97408315 - MLT1G LTR MaLR -290 300 15 1826 159 14 3 chr13 22336755 22337051 -97407847 - AluSx SINE Alu -13 299 1 1573 223 58 62 chr13 22337268 22337330 -97407568 - Charlie1 DNA MER1_type 0 2761 2700 1899 161 3 3 chr13 22337330 22337640 -97407258 + AluSx SINE Alu 1 310 -2 1573 223 58 62 chr13 22337640 22338107 -97406791 - Charlie1 DNA MER1_type -61 2700 2234 213 316 68 34 chr13 22338666 22338783 -97406115 + MIR SINE MIR 81 201 -61 386 305 49 43 chr13 22339910 22340074 -97404824 + L2 LINE L2 3104 3268 -4 2095 116 10 0 chr13 22340558 22340860 -97404038 + AluSx SINE Alu 1 305 -7 637 67 56 0 chr13 22341242 22341331 -97403567 - AluY SINE Alu -7 304 211 201 39 0 0 chr13 22342141 22342167 -97402731 + (CA)n Simple_repeat Simple_repeat 2 27 0 400 111 0 0 chr13 22342197 22342251 -97402647 - MSTD LTR MaLR -342 54 1 367 187 157 30 chr13 22342324 22342451 -97402447 + L1ME LINE L1 849 995 -5075 1410 164 100 36 chr13 22342451 22342732 -97402166 + AluJo SINE Alu 1 299 -3 252 182 121 0 chr13 22342755 22342821 -97402077 + FAM SINE Alu 105 178 -1 695 216 51 47 chr13 22342821 22343076 -97401822 + L1ME LINE L1 2091 2346 -3734 * 5702 230 69 57 chr13 22343073 22343233 -97401665 + L1ME LINE L1 3033 3190 -2890 2023 140 3 10 chr13 22343233 22343547 -97401351 + AluSx SINE Alu 1 312 0 5702 230 69 57 chr13 22343547 22343772 -97401126 + L1ME LINE L1 3190 3411 -2669 1541 188 11 31 chr13 22343772 22344059 -97400839 - AluJo SINE Alu -29 283 3 5702 230 69 57 chr13 22344059 22344954 -97399944 + L1ME LINE L1 3411 4294 -1786 1807 118 0 4 chr13 22344954 22345208 -97399690 + L1PB1 LINE L1 5896 6148 -3 5702 230 69 57 chr13 22345208 22345458 -97399440 + L1ME LINE L1 4294 4539 -1541 2235 109 7 3 chr13 22345458 22345760 -97399138 + AluSq SINE Alu 1 303 -10 5702 230 69 57 chr13 22345760 22346383 -97398515 + L1ME LINE L1 4539 5219 -861 2371 71 7 0 chr13 22346383 22346677 -97398221 + AluY SINE Alu 1 296 -15 5702 230 69 57 chr13 22346677 22346773 -97398125 + L1ME LINE L1 5219 5312 -768 559 123 26 70 chr13 22346774 22346888 -97398010 - FLAM_C SINE Alu -6 137 29 269 262 37 47 chr13 22346889 22346996 -97397902 + L1ME LINE L1 5444 5549 -547 2087 125 17 0 chr13 22346996 22347291 -97397607 - AluSx SINE Alu -12 300 1 1863 165 0 16 chr13 22347339 22347648 -97397250 + AluJb SINE Alu 1 304 -8 875 300 93 39 chr13 22347710 22348203 -97396695 + LTR33 LTR ERVL 2 521 0 7794 49 6 10 chr13 22348339 22349517 -97395381 + SVA Other Other 326 1382 -4 1564 177 78 27 chr13 22349827 22350161 -97394737 - MSTD LTR MaLR -45 351 1 992 178 194 62 chr13 22350184 22350256 -97394642 + MER2 DNA MER2_type 1 62 -282 252 0 0 0 chr13 22350256 22350284 -97394614 + (TA)n Simple_repeat Simple_repeat 2 29 0 2107 77 7 39 chr13 22350286 22350572 -97394326 - AluY SINE Alu -34 277 1 992 178 194 62 chr13 22350572 22350800 -97394098 + MER2 DNA MER2_type 62 344 0 1681 185 0 17 chr13 22350837 22351134 -97393764 + AluJb SINE Alu 1 292 -20 944 302 47 15 chr13 22351200 22351601 -97393297 + L1MC/D LINE L1 5278 5691 -2117 4940 191 8 43 chr13 22351814 22351958 -97392940 - HSMAR1 DNA Mariner 0 1287 1140 2175 106 13 3 chr13 22351958 22352259 -97392639 - AluSp SINE Alu -1 312 9 4940 191 8 43 chr13 22352259 22352956 -97391942 - HSMAR1 DNA Mariner -147 1140 475 2196 120 0 0 chr13 22352968 22353259 -97391639 + AluSx SINE Alu 1 291 -21 3310 55 59 7 chr13 22353259 22353697 -97391201 + L1PA7 LINE L1 5686 6146 -8 2258 120 0 7 chr13 22353706 22354014 -97390884 + AluSg SINE Alu 1 306 -4 324 259 62 49 chr13 22354469 22354631 -97390267 + MER65-int LTR ERV1 98 261 -4610 309 229 91 48 chr13 22355377 22355587 -97389311 + L1MC5 LINE L1 7642 7860 -101 843 219 11 38 chr13 22355816 22355999 -97388899 - MER20 DNA MER1_type -4 215 38 2033 134 0 0 chr13 22357575 22357859 -97387039 - AluSx SINE Alu -28 284 1 180 277 0 0 chr13 22359024 22359071 -97385827 - L2 LINE L2 -1 3271 3225 448 257 13 40 chr13 22359533 22359685 -97385213 - MER104 DNA Tc2 0 180 33 1652 193 0 7 chr13 22359784 22360080 -97384818 + AluJo SINE Alu 1 294 -18 471 262 146 45 chr13 22360093 22360321 -97384577 - MIR SINE MIR -11 251 4 5057 157 32 60 chr13 22361694 22362793 -97382105 + MER11C LTR ERVK 3 1070 -1 6119 191 36 27 chr13 22363643 22365078 -97379820 - L1 LINE L1 -810 5336 3889 1447 157 19 83 chr13 22365078 22365390 -97379508 - AluSq SINE Alu -21 292 1 617 225 43 0 chr13 22365391 22365529 -97379369 - FRAM SINE Alu -5 171 28 273 206 68 14 chr13 22366194 22366212 -97378686 + L1MC4 LINE L1 6460 6476 -1566 3331 203 67 85 chr13 22366212 22367092 -97377806 + MER6 DNA MER2_type 1 864 -1 273 206 68 14 chr13 22367092 22367146 -97377752 + L1MC4 LINE L1 6476 6536 -1506 3461 175 50 5 chr13 22367146 22367804 -97377094 + Tigger2 DNA MER2_type 2 689 -2029 863 208 38 32 chr13 22367850 22368078 -97376820 + L1MC4 LINE L1 7016 7241 -801 524 113 62 0 chr13 22368078 22368158 -97376740 + L1PA16 LINE L1 6072 6156 -10 863 208 38 32 chr13 22368158 22368346 -97376552 + L1MC4 LINE L1 7241 7662 -380 2283 98 3 0 chr13 22368384 22368680 -97376218 + AluSq SINE Alu 1 297 -16 2477 51 10 0 chr13 22371165 22371457 -97373441 + AluY SINE Alu 1 295 -16 319 198 32 19 chr13 22371563 22371720 -97373178 + (TA)n Simple_repeat Simple_repeat 2 160 0 237 322 23 0 chr13 22371783 22371870 -97373028 - MIR3 SINE MIR -46 162 74 879 199 11 69 chr13 22372400 22372662 -97372236 + pTR5 LTR ERV1 782 1028 -1410 1712 117 0 146 chr13 22372749 22373144 -97371754 + pTR5 LTR ERV1 1352 2009 -429 323 290 0 0 chr13 22373144 22373244 -97371654 + LTR30 LTR ERV1 525 624 -98 834 120 8 0 chr13 22373244 22373361 -97371537 + LTR12 LTR ERV1 359 476 -238 261 254 0 60 chr13 22379375 22379509 -97365389 + (TTGGGG)n Simple_repeat Simple_repeat 1 126 0 285 62 0 42 chr13 22379811 22379859 -97365039 + Alu SINE Alu 257 302 0 189 0 0 0 chr13 22379910 22379931 -97364967 + (CA)n Simple_repeat Simple_repeat 2 22 0 1457 163 16 16 chr13 22379948 22380200 -97364698 - AluJo SINE Alu -24 288 37 915 231 62 30 chr13 22380344 22380734 -97364164 - MLT1A1 LTR MaLR -2 363 10 543 245 100 52 chr13 22381441 22381491 -97363407 + L1M4 LINE L1 3800 3846 -2300 2044 142 3 7 chr13 22381491 22381801 -97363097 + AluSx SINE Alu 1 309 -3 543 245 100 52 chr13 22381801 22382040 -97362858 + L1M4 LINE L1 3846 4103 -2043 556 189 0 0 chr13 22382040 22382135 -97362763 - AluJb SINE Alu -12 300 206 520 121 0 36 chr13 22382909 22382992 -97361906 + FRAM SINE Alu 70 149 -27 2010 130 48 0 chr13 22383515 22383808 -97361090 + AluSx SINE Alu 1 307 -5 3310 170 108 64 chr13 22383813 22385149 -97359749 - LTR19-int LTR ERV1 -2415 3531 478 2106 127 3 3 chr13 22387712 22388011 -97356887 + AluSc SINE Alu 1 299 -10 258 273 102 0 chr13 22388733 22388821 -97356077 + MIR SINE MIR 93 189 -73 1986 138 0 0 chr13 22389489 22389778 -97355120 - AluSg1 SINE Alu -20 289 1 22 0 0 0 chr13 22390835 22390857 -97354041 + AT_rich Low_complexity Low_complexity 1 22 0 2753 14 0 0 chr13 22391152 22391472 -97353426 + AluYa5 SINE Alu 1 320 0 188 200 20 0 chr13 22392990 22393040 -97351858 + (TA)n Simple_repeat Simple_repeat 1 51 0 184 224 158 0 chr13 22393286 22393362 -97351536 + MIR SINE MIR 175 262 0 2424 87 0 6 chr13 22395348 22395660 -97349238 + AluY SINE Alu 1 310 -1 1512 108 42 12 chr13 22395914 22396154 -97348744 + Tigger2 DNA MER2_type 2418 2664 -54 654 169 79 66 chr13 22396228 22396518 -97348380 + MLT1C LTR MaLR 106 390 0 253 323 0 0 chr13 22399668 22399733 -97345165 + polypyrimidine Low_complexity Low_complexity 2 66 0 6858 133 44 15 chr13 22399747 22399797 -97345101 - Tigger3b DNA MER2_type -1797 1231 1184 2252 102 0 23 chr13 22399797 22400100 -97344798 + AluSg SINE Alu 1 296 -14 6858 133 44 15 chr13 22400100 22401244 -97343654 - Tigger3b DNA MER2_type -1844 1184 2 381 255 35 80 chr13 22401246 22401709 -97343189 - L1MC5 LINE L1 -187 7774 7333 933 202 16 21 chr13 22401787 22401975 -97342923 + AluJo SINE Alu 119 305 -7 234 325 0 0 chr13 22402113 22402193 -97342705 - L1MC4 LINE L1 -773 7269 7190 308 299 62 10 chr13 22405511 22405608 -97339290 - MIR SINE MIR -114 148 47 181 249 45 141 chr13 22405596 22405773 -97339125 + MIR SINE MIR 53 212 -50 * 511 286 81 5 chr13 22406621 22406806 -97338092 + MIR SINE MIR 59 257 -5 243 0 0 0 chr13 22406807 22406834 -97338064 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1683 114 82 7 chr13 22406915 22407221 -97337677 + MER46B DNA MER2_type 32 235 -1 191 255 0 20 chr13 22407287 22407338 -97337560 + L2 LINE L2 2685 2734 -580 800 110 31 16 chr13 22407626 22407753 -97337145 + AluSg/x SINE Alu 182 310 0 422 252 53 27 chr13 22407861 22408044 -97336854 + L1ME LINE L1 5473 5657 -464 509 247 84 6 chr13 22408132 22408298 -97336600 + MER97b DNA MER1_type? 1 179 -874 1018 219 73 0 chr13 22409090 22409337 -97335561 - L1MCa LINE L1 -6143 283 19 268 302 95 28 chr13 22409752 22410004 -97334894 + L2 LINE L2 2422 2690 -624 2400 73 7 7 chr13 22410538 22410840 -97334058 - AluSg SINE Alu -8 302 1 180 236 83 42 chr13 22410943 22411015 -97333883 - L2 LINE L2 0 3272 3198 25 0 0 0 chr13 22411299 22411324 -97333574 + AT_rich Low_complexity Low_complexity 1 25 0 320 125 18 0 chr13 22411337 22411393 -97333505 + LTR54 LTR ERV1 416 472 -38 462 254 8 16 chr13 22413218 22413340 -97331558 + L2 LINE L2 3193 3313 0 398 276 125 0 chr13 22414243 22414395 -97330503 - MIR SINE MIR 0 262 92 195 339 89 40 chr13 22414770 22414894 -97330004 - MIR3 SINE MIR -65 143 14 548 282 74 28 chr13 22414921 22415137 -97329761 + MIR SINE MIR 12 237 -25 1898 155 0 13 chr13 22415210 22415513 -97329385 + AluJb SINE Alu 1 299 -13 215 222 0 79 chr13 22415523 22415586 -97329312 + MIR SINE MIR 198 255 -7 21 0 0 0 chr13 22415704 22415725 -97329173 + AT_rich Low_complexity Low_complexity 1 21 0 317 172 62 0 chr13 22417659 22417723 -97327175 - MIR SINE MIR -72 190 123 2138 116 14 0 chr13 22418342 22418636 -97326262 + AluSx SINE Alu 6 303 -9 219 354 23 31 chr13 22419073 22419203 -97325695 - L2 LINE L2 -5 3308 3180 30 0 0 0 chr13 22420393 22420423 -97324475 + AT_rich Low_complexity Low_complexity 1 30 0 655 287 171 6 chr13 22420697 22421031 -97323867 + L3 LINE CR1 666 1054 -523 2422 123 40 38 chr13 22421233 22421656 -97323242 - MSTC LTR MaLR -4 424 1 1488 210 89 23 chr13 22421822 22422251 -97322647 + MSTB2 LTR MaLR 1 457 0 369 302 173 56 chr13 22422775 22423116 -97321782 + L3 LINE CR1 1079 1459 -118 645 244 141 53 chr13 22423303 22423794 -97321104 - L1ME2 LINE L1 -224 5938 5406 751 193 0 15 chr13 22423862 22423997 -97320901 - FLAM_A SINE Alu 0 133 1 283 91 0 0 chr13 22424216 22424260 -97320638 - AluJo SINE Alu -6 294 251 977 170 19 0 chr13 22424260 22424419 -97320479 - AluJo SINE Alu -150 162 1 1960 273 76 56 chr13 22424425 22425701 -97319197 - L1ME2 LINE L1 -1097 5049 3725 1753 130 4 0 chr13 22425701 22425954 -97318944 - AluSx SINE Alu -10 302 49 1960 273 76 56 chr13 22425954 22426470 -97318428 - L1ME2 LINE L1 -2421 3725 3221 1718 139 57 36 chr13 22426478 22426810 -97318088 + MER2 DNA MER2_type 7 345 0 337 280 115 37 chr13 22427043 22427610 -97317288 - L1ME2 LINE L1 -3214 2932 2322 208 191 48 0 chr13 22429728 22429770 -97315128 + MIR SINE MIR 217 260 -2 267 216 13 150 chr13 22429771 22429824 -97315074 + MER94 DNA DNA 1 60 -74 1603 196 4 0 chr13 22429824 22430105 -97314793 - AluJo SINE Alu -30 282 1 267 216 13 150 chr13 22430105 22430204 -97314694 + MER94 DNA DNA 60 132 -2 243 288 45 0 chr13 22430305 22430371 -97314527 - MIR SINE MIR -70 192 124 191 324 15 0 chr13 22430557 22430625 -97314273 + MER5A DNA MER1_type 7 75 -114 * 262 275 266 9 chr13 22430569 22430678 -97314220 - MER5A DNA MER1_type -4 185 49 660 83 0 0 chr13 22430678 22430762 -97314136 + AluSg/x SINE Alu 211 294 -16 1083 173 15 10 chr13 22431808 22432010 -97312888 - MER2 DNA MER2_type -135 210 8 269 220 110 9 chr13 22433232 22433341 -97311557 + MER103 DNA DNA 2 121 -45 2281 117 0 3 chr13 22433618 22433925 -97310973 - AluSx SINE Alu -6 306 1 21 0 0 0 chr13 22433932 22433953 -97310945 + AT_rich Low_complexity Low_complexity 1 21 0 266 262 36 12 chr13 22434000 22434084 -97310814 - MER46C DNA MER2_type -1 337 252 743 201 109 41 chr13 22434091 22434516 -97310382 - LTR54B LTR ERV1 -8 490 2 538 230 59 54 chr13 22434554 22434776 -97310122 - MER46C DNA MER2_type -113 225 3 2064 136 27 54 chr13 22434828 22435183 -97309715 + MER57A LTR ERV1 8 371 -32 258 32 0 0 chr13 22435183 22435214 -97309684 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1916 125 0 30 chr13 22435221 22435517 -97309381 - AluSx SINE Alu -25 287 1 2064 136 27 54 chr13 22435517 22435559 -97309339 + MER57A LTR ERV1 377 402 -1 22 0 0 0 chr13 22435735 22435757 -97309141 + AT_rich Low_complexity Low_complexity 1 22 0 641 203 165 21 chr13 22436056 22436293 -97308605 - MER31A LTR ERV1 0 485 215 195 42 0 0 chr13 22436418 22436442 -97308456 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 734 275 143 13 chr13 22436510 22436895 -97308003 + L1MCc LINE L1 26 460 -5963 963 289 61 42 chr13 22437067 22437656 -97307242 + L1MCc LINE L1 1477 2076 -4865 21 36 0 0 chr13 22438014 22438042 -97306856 + AT_rich Low_complexity Low_complexity 1 28 0 956 149 51 17 chr13 22438045 22438220 -97306678 + AluSx SINE Alu 3 183 -129 1123 149 44 6 chr13 22438320 22438501 -97306397 + AluSg/x SINE Alu 111 298 -14 484 241 71 71 chr13 22438713 22438942 -97305956 - MIR SINE MIR 0 262 25 2436 61 0 17 chr13 22439258 22439555 -97305343 + AluY SINE Alu 1 292 -19 453 169 0 0 chr13 22439984 22440055 -97304843 - MER2 DNA MER2_type 0 345 275 806 175 7 28 chr13 22440055 22440198 -97304700 + FRAM SINE Alu 1 140 -36 21 0 0 0 chr13 22440217 22440238 -97304660 + AT_rich Low_complexity Low_complexity 1 21 0 709 169 4 9 chr13 22440269 22440520 -97304378 - MER2 DNA MER2_type -61 284 1 543 189 0 19 chr13 22441008 22441114 -97303784 - L1MD2 LINE L1 -13 6346 6243 938 187 20 5 chr13 22441140 22441343 -97303555 - MER72 LTR ERV1 -516 206 1 299 285 138 79 chr13 22441414 22441783 -97303115 + L2 LINE L2 2882 3272 0 1017 215 94 97 chr13 22441785 22442533 -97302365 - LTR8A LTR ERV1 0 727 1 21 36 0 0 chr13 22443745 22443773 -97301125 + AT_rich Low_complexity Low_complexity 1 28 0 251 252 26 126 chr13 22444095 22444176 -97300722 - MIR SINE MIR -45 217 156 2334 96 3 0 chr13 22444176 22444468 -97300430 + AluSg SINE Alu 1 293 -17 251 252 26 126 chr13 22444468 22444537 -97300361 - MIR SINE MIR -106 156 82 2502 56 0 3 chr13 22445420 22445723 -97299175 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 22445743 22445771 -97299127 + AT_rich Low_complexity Low_complexity 1 28 0 441 0 0 0 chr13 22447053 22447102 -97297796 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2304 67 27 3 chr13 22447126 22447423 -97297475 - AluY SINE Alu -7 304 1 219 284 0 15 chr13 22448222 22448293 -97296605 - MIR SINE MIR -6 256 187 264 308 101 40 chr13 22448331 22448529 -97296369 - MIR SINE MIR -12 250 41 879 296 23 40 chr13 22448633 22448937 -97295961 - MLT1K LTR MaLR -2 586 288 488 278 106 39 chr13 22450075 22450406 -97294492 + L1ME4a LINE L1 4706 5058 -1088 2048 113 7 23 chr13 22450406 22450737 -97294161 - AluSx SINE Alu 0 312 1 2421 145 6 6 chr13 22450782 22451147 -97293751 - MER47A DNA MER2_type 0 366 2 1972 134 25 0 chr13 22451249 22451526 -97293372 - AluSx SINE Alu -28 284 1 1057 227 95 122 chr13 22451554 22452180 -97292718 + L1ME4a LINE L1 5334 5965 -205 399 284 0 0 chr13 22452900 22452995 -97291903 + MER103 DNA DNA 20 114 -52 2398 72 3 0 chr13 22454193 22454497 -97290401 + AluY SINE Alu 1 305 -6 2153 111 9 29 chr13 22454511 22454827 -97290071 + AluSx SINE Alu 3 312 0 2617 155 29 9 chr13 22454870 22455289 -97289609 - MSTA LTR MaLR 0 428 2 428 242 30 20 chr13 22455735 22455834 -97289064 - L2 LINE L2 -20 3293 3194 184 311 87 55 chr13 22456283 22456572 -97288326 - L2 LINE L2 -821 2493 2196 2017 138 7 0 chr13 22457379 22457683 -97287215 - AluSx SINE Alu -6 306 1 197 178 22 0 chr13 22457725 22457770 -97287128 + (TA)n Simple_repeat Simple_repeat 2 47 0 1256 206 4 24 chr13 22457827 22458075 -97286823 - AluJb SINE Alu -32 280 38 23 0 0 0 chr13 22459460 22459483 -97285415 + AT_rich Low_complexity Low_complexity 1 23 0 345 308 45 32 chr13 22459785 22459941 -97284957 + L2 LINE L2 2674 2831 -483 289 262 83 48 chr13 22460121 22460266 -97284632 + L2 LINE L2 3154 3303 -10 2000 246 135 20 chr13 22460280 22461012 -97283886 - L1ME3 LINE L1 -2 6160 5345 5409 247 113 38 chr13 22461054 22461162 -97283736 - L2 LINE L2 -808 2506 2408 1441 153 145 0 chr13 22461162 22461417 -97283481 + AluJo SINE Alu 1 292 -20 5409 247 113 38 chr13 22461417 22462969 -97281929 - L2 LINE L2 -906 2408 646 1836 206 100 30 chr13 22462969 22463440 -97281458 - MLT1D LTR MaLR -1 504 1 5409 247 113 38 chr13 22463440 22463923 -97280975 - L2 LINE L2 -2668 646 201 1355 142 15 0 chr13 22464712 22464909 -97279989 + AluJo SINE Alu 1 200 -112 853 298 83 24 chr13 22465147 22465520 -97279378 + MLT1I LTR MaLR 1 395 -14 274 237 75 11 chr13 22465681 22465774 -97279124 + L1ME4a LINE L1 6023 6121 0 460 160 21 11 chr13 22466253 22466347 -97278551 + MLT1A1 LTR MaLR 58 152 -213 287 25 25 0 chr13 22466374 22466414 -97278484 + (TC)n Simple_repeat Simple_repeat 1 41 0 983 175 49 24 chr13 22466414 22466636 -97278262 + MLT1A1 LTR MaLR 162 363 -2 1650 177 0 30 chr13 22467575 22467874 -97277024 - AluJb SINE Alu -13 299 10 43407 55 4 6 chr13 22468182 22474350 -97270548 - L1PA5 LINE L1 0 6154 1 281 255 75 50 chr13 22474531 22474692 -97270206 - L1M4 LINE L1 -1901 4245 4081 319 267 158 17 chr13 22474974 22475094 -97269804 + MIR SINE MIR 126 262 0 22 0 0 0 chr13 22475477 22475499 -97269399 + AT_rich Low_complexity Low_complexity 1 22 0 437 195 207 12 chr13 22476182 22476334 -97268564 - L1MD3 LINE L1 0 7995 7645 546 204 55 149 chr13 22476794 22477069 -97267829 + MER112 DNA MER1_type 1 249 -11 204 67 0 0 chr13 22478082 22478112 -97266786 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 5142 182 70 24 chr13 22478419 22478666 -97266232 + L1MB7 LINE L1 3999 4233 -1951 423 0 0 0 chr13 22478666 22478713 -97266185 + (CA)n Simple_repeat Simple_repeat 2 48 0 5142 182 70 24 chr13 22478713 22478724 -97266174 + L1MB7 LINE L1 4233 4242 -1942 2241 121 0 13 chr13 22478724 22479038 -97265860 + AluSq SINE Alu 1 310 -3 5142 182 70 24 chr13 22479038 22480846 -97264052 + L1MB7 LINE L1 4242 6165 -19 539 138 0 0 chr13 22480854 22480941 -97263957 + L1MB8 LINE L1 6077 6163 -15 351 0 0 0 chr13 22482252 22482291 -97262607 + (TG)n Simple_repeat Simple_repeat 2 40 0 494 271 98 33 chr13 22483408 22483622 -97261276 - L2 LINE L2 -259 3054 2827 1659 156 35 38 chr13 22483689 22484059 -97260839 - MSTC LTR MaLR -2 426 18 1575 158 12 71 chr13 22485066 22485388 -97259510 - AluJb SINE Alu -9 303 1 567 236 102 77 chr13 22485665 22485978 -97258920 - MLT1J LTR MaLR -188 323 3 28 29 0 0 chr13 22486030 22486065 -97258833 + AT_rich Low_complexity Low_complexity 1 35 0 2442 78 0 7 chr13 22486070 22486366 -97258532 + AluSg SINE Alu 1 294 -16 1789 234 84 44 chr13 22486499 22487068 -97257830 - MLT1E LTR MaLR -1 592 1 195 69 0 0 chr13 22487223 22487252 -97257646 + (GA)n Simple_repeat Simple_repeat 1 29 0 1500 175 93 10 chr13 22488254 22488545 -97256353 - MER44D DNA MER2_type -5 604 20 829 212 0 50 chr13 22488587 22488766 -97256132 + MER8 DNA MER2_type 8 177 -62 384 187 121 22 chr13 22488768 22488859 -97256039 - Tigger2 DNA MER2_type -2618 100 1 1397 202 24 14 chr13 22488965 22489252 -97255646 + AluJo SINE Alu 1 290 -22 2161 131 0 6 chr13 22491665 22491978 -97252920 - AluSx SINE Alu -1 311 1 22 0 0 0 chr13 22492896 22492918 -97251980 + AT_rich Low_complexity Low_complexity 1 22 0 1538 206 99 0 chr13 22493079 22493434 -97251464 - MLT1B LTR MaLR 0 390 1 292 319 83 35 chr13 22494873 22495017 -97249881 - MIR3 SINE MIR -57 151 1 3083 109 78 52 chr13 22496394 22496909 -97247989 + MER1A DNA MER1_type 1 528 -1 2272 109 3 6 chr13 22497366 22497678 -97247220 + AluSq SINE Alu 1 311 -2 187 176 0 0 chr13 22498445 22498479 -97246419 - L2 LINE L2 0 3313 3280 457 303 0 16 chr13 22498485 22498607 -97246291 - L2 LINE L2 0 3313 3194 356 300 121 14 chr13 22498684 22498907 -97245991 - MIR SINE MIR -15 247 1 200 306 14 56 chr13 22500450 22500522 -97244376 + MIR SINE MIR 49 117 -145 2145 112 14 0 chr13 22500581 22500876 -97244022 - AluSx SINE Alu -13 299 1 4553 183 87 13 chr13 22502722 22503742 -97241156 + L1MC3 LINE L1 6690 7785 0 304 271 22 66 chr13 22503866 22504047 -97240851 - L2 LINE L2 -438 2876 2704 294 337 0 12 chr13 22504268 22504351 -97240547 - L3 LINE CR1 -109 1468 1387 631 209 32 73 chr13 22505329 22505549 -97239349 + L2 LINE L2 3103 3313 0 1041 150 0 24 chr13 22505611 22505778 -97239120 + AluSg/x SINE Alu 132 294 -16 2117 127 0 0 chr13 22505780 22506080 -97238818 + AluSg SINE Alu 1 300 -10 2303 110 0 7 chr13 22507157 22507467 -97237431 - AluSx SINE Alu -4 308 1 2421 145 6 6 chr13 22507512 22507877 -97237021 - MER47A DNA MER2_type 0 366 2 1972 134 25 0 chr13 22507979 22508256 -97236642 - AluSx SINE Alu -28 284 1 1057 227 95 122 chr13 22508284 22508910 -97235988 + L1ME3A LINE L1 5334 5965 -205 399 284 0 0 chr13 22509630 22509725 -97235173 + MER103 DNA DNA 20 114 -52 2398 72 3 0 chr13 22510923 22511227 -97233671 + AluY SINE Alu 1 305 -6 2153 111 9 29 chr13 22511241 22511557 -97233341 + AluSx SINE Alu 3 312 0 2617 155 29 9 chr13 22511600 22512019 -97232879 - MSTA LTR MaLR 0 428 2 428 242 30 20 chr13 22512465 22512564 -97232334 - L2 LINE L2 -20 3293 3194 184 311 87 55 chr13 22513013 22513302 -97231596 - L2 LINE L2 -821 2493 2196 2017 138 7 0 chr13 22514108 22514412 -97230486 - AluSx SINE Alu -6 306 1 197 178 22 0 chr13 22514454 22514499 -97230399 + (TA)n Simple_repeat Simple_repeat 2 47 0 1256 206 4 24 chr13 22514556 22514804 -97230094 - AluJb SINE Alu -32 280 38 23 0 0 0 chr13 22516189 22516212 -97228686 + AT_rich Low_complexity Low_complexity 1 23 0 345 308 45 32 chr13 22516514 22516670 -97228228 + L2 LINE L2 2674 2831 -483 289 262 83 48 chr13 22516850 22516995 -97227903 + L2 LINE L2 3154 3303 -10 2000 246 135 20 chr13 22517009 22517741 -97227157 - L1ME3 LINE L1 -2 6160 5345 3116 230 109 52 chr13 22517783 22517891 -97227007 - L2 LINE L2 -808 2506 2406 1441 153 145 0 chr13 22517891 22518146 -97226752 + AluJo SINE Alu 1 292 -20 3116 230 109 52 chr13 22518146 22519298 -97225600 - L2 LINE L2 -908 2406 1175 1063 224 8 4 chr13 22519961 22520206 -97224692 + AluSq SINE Alu 54 299 -14 1913 134 0 7 chr13 22520272 22520576 -97224322 - AluSx SINE Alu 0 302 1 246 289 46 30 chr13 22521585 22521747 -97223151 - MIR SINE MIR -10 252 36 674 159 0 66 chr13 22523232 22523383 -97221515 - L1MB4 LINE L1 -1 6179 6039 5151 111 9 5 chr13 22524385 22525123 -97219775 - L1PA13 LINE L1 0 6163 5423 242 232 29 0 chr13 22525713 22525782 -97219116 - LTR67 LTR ERVL -3 554 484 275 157 131 16 chr13 22526024 22526185 -97218713 - MER20 DNA MER1_type 0 219 1 217 250 94 122 chr13 22526248 22526428 -97218470 + L2 LINE L2 3096 3270 -2 648 260 68 17 chr13 22527262 22527439 -97217459 - MER5A DNA MER1_type -3 186 1 1717 175 7 13 chr13 22527465 22527768 -97217130 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr13 22527773 22527795 -97217103 + AT_rich Low_complexity Low_complexity 1 22 0 1491 111 79 14 chr13 22527795 22528011 -97216887 + MER30 DNA MER1_type 1 230 0 386 273 284 10 chr13 22529245 22529439 -97215459 + MIR SINE MIR 2 248 -14 3413 119 35 16 chr13 22530851 22531398 -97213500 - LTR9B LTR ERV1 -87 557 1 1253 142 10 0 chr13 22531398 22531595 -97213303 - HUERS-P3 LTR ERV1 -1 8918 8720 457 102 0 0 chr13 22531593 22531652 -97213246 - HUERS-P3b LTR ERV1 -1274 6144 6086 * 1038 47 16 0 chr13 22531650 22531777 -97213121 - HUERS-P3b LTR ERV1 -2131 3086 2958 1128 124 75 0 chr13 22531819 22532005 -97212893 - LTR9B LTR ERV1 0 644 445 3367 208 72 45 chr13 22533288 22533932 -97210966 - L1ME2 LINE L1 -9 6155 5446 1925 140 3 38 chr13 22533932 22534246 -97210652 + AluJb SINE Alu 7 309 -3 3367 208 72 45 chr13 22534246 22534792 -97210106 - L1ME2 LINE L1 -718 5446 4916 278 255 255 13 chr13 22535127 22535280 -97209618 - MIR SINE MIR -14 248 59 2090 141 0 0 chr13 22537532 22537822 -97207076 - AluSx SINE Alu -22 290 1 739 125 0 0 chr13 22537882 22538005 -97206893 - AluSg/x SINE Alu 0 311 189 1736 83 5 0 chr13 22538006 22538224 -97206674 - AluSq SINE Alu -94 219 1 531 152 9 38 chr13 22538711 22538816 -97206082 + L1MB3 LINE L1 6075 6176 -7 476 324 143 5 chr13 22540429 22540639 -97204259 - L3 LINE CR1 -938 639 401 261 343 135 6 chr13 22541209 22541387 -97203511 + L2 LINE L2 2252 2452 -862 1982 183 127 44 chr13 22541712 22542192 -97202706 + MLT2B1 LTR ERVL 1 520 0 193 327 84 28 chr13 22543993 22544100 -97200798 - L2 LINE L2 -14 3258 3146 869 194 62 44 chr13 22544324 22544551 -97200347 + L1MC1 LINE L1 6078 6308 -25 1438 111 136 76 chr13 22544717 22544869 -97200029 + THE1C LTR MaLR 1 142 -233 1943 157 0 3 chr13 22544869 22545163 -97199735 + AluSx SINE Alu 1 293 -19 1438 111 136 76 chr13 22545163 22545326 -97199572 + THE1C LTR MaLR 142 335 -40 1950 78 67 11 chr13 22545326 22545615 -97199283 + AluY SINE Alu 1 304 0 232 211 0 35 chr13 22545615 22545672 -97199226 + THE1C LTR MaLR 374 428 0 363 191 143 38 chr13 22546107 22546212 -97198686 - L1MC1 LINE L1 -126 6207 6092 1186 220 59 54 chr13 22546304 22546695 -97198203 + MLT2C2 LTR ERVL 1 393 -71 917 177 29 34 chr13 22546695 22546870 -97198028 - FAM SINE Alu -11 174 1 243 343 56 9 chr13 22546885 22546993 -97197905 + L2 LINE L2 3117 3229 -43 823 256 81 42 chr13 22548254 22548613 -97196285 - L1ME LINE L1 -329 5792 5420 233 219 256 0 chr13 22548819 22548901 -97195997 + MIR SINE MIR 72 174 -88 440 231 71 106 chr13 22550301 22550882 -97194016 - HSREP522 Satellite telomeric 0 560 1 219 253 23 23 chr13 22551667 22551754 -97193144 + GA-rich Low_complexity Low_complexity 5 91 0 1626 224 26 5 chr13 22552571 22553000 -97191898 - L1 LINE L1 -810 5336 4899 252 0 0 0 chr13 22553727 22553755 -97191143 + (ATG)n Simple_repeat Simple_repeat 1 28 0 231 326 34 11 chr13 22554268 22554357 -97190541 + A-rich Low_complexity Low_complexity 4 94 0 210 484 11 11 chr13 22554625 22554716 -97190182 + A-rich Low_complexity Low_complexity 2 92 0 254 447 0 41 chr13 22554820 22554943 -97189955 + (TAAA)n Simple_repeat Simple_repeat 2 119 0 195 304 29 0 chr13 22555014 22555083 -97189815 + A-rich Low_complexity Low_complexity 2 72 0 21 36 0 0 chr13 22555086 22555114 -97189784 + AT_rich Low_complexity Low_complexity 1 28 0 219 157 98 20 chr13 22555152 22555203 -97189695 + (ATGTG)n Simple_repeat Simple_repeat 4 58 0 322 363 74 99 chr13 22555246 22555781 -97189117 + HAL1 LINE L1 881 1302 -1205 302 276 0 17 chr13 22555816 22555874 -97189024 + polypurine Low_complexity Low_complexity 20 76 0 304 311 19 19 chr13 22555951 22556057 -97188841 + L1M4 LINE L1 3076 3181 -2965 273 274 0 0 chr13 22556073 22556157 -97188741 + A-rich Low_complexity Low_complexity 1 84 0 191 263 26 0 chr13 22556301 22556339 -97188559 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 251 154 0 19 chr13 22556342 22556394 -97188504 + G-rich Low_complexity Low_complexity 5 55 0 * 663 95 0 0 chr13 22556393 22556488 -97188410 + (A)n Simple_repeat Simple_repeat 1 95 0 420 55 0 0 chr13 22556488 22556543 -97188355 + (G)n Simple_repeat Simple_repeat 1 55 0 272 135 0 0 chr13 22556550 22556602 -97188296 + (A)n Simple_repeat Simple_repeat 1 52 0 358 284 0 11 chr13 22556614 22556702 -97188196 + GA-rich Low_complexity Low_complexity 2 88 0 * 978 48 0 0 chr13 22556701 22556777 -97188121 + (A)n Simple_repeat Simple_repeat 1 79 -47 504 0 0 0 chr13 22556777 22556833 -97188065 + (G)n Simple_repeat Simple_repeat 1 56 0 978 48 0 0 chr13 22556833 22556882 -97188016 + (A)n Simple_repeat Simple_repeat 78 126 0 380 308 44 0 chr13 22556882 22556914 -97187984 + L1MCa LINE L1 2226 2255 -4171 501 17 0 0 chr13 22556914 22556972 -97187926 + (G)n Simple_repeat Simple_repeat 1 58 0 380 308 44 0 chr13 22556972 22557047 -97187851 + L1MCa LINE L1 2255 2325 -4101 447 19 0 0 chr13 22557047 22557099 -97187799 + (G)n Simple_repeat Simple_repeat 1 52 0 380 308 44 0 chr13 22557099 22557155 -97187743 + L1MCa LINE L1 2325 3479 -2947 261 98 0 0 chr13 22557175 22557216 -97187682 + (G)n Simple_repeat Simple_repeat 1 41 0 786 11 0 0 chr13 22557216 22557307 -97187591 + (A)n Simple_repeat Simple_repeat 1 91 0 279 0 0 0 chr13 22557308 22557339 -97187559 + (C)n Simple_repeat Simple_repeat 1 31 0 31 196 0 0 chr13 22557804 22557896 -97187002 + GC_rich Low_complexity Low_complexity 1 92 0 216 194 75 0 chr13 22558366 22558433 -97186465 + A-rich Low_complexity Low_complexity 2 73 0 349 455 67 51 chr13 22558438 22558947 -97185951 + L1MDa LINE L1 1106 3796 -2744 518 148 0 0 chr13 22559092 22559180 -97185718 + (A)n Simple_repeat Simple_repeat 1 88 0 188 349 0 0 chr13 22559198 22559304 -97185594 + A-rich Low_complexity Low_complexity 1 106 0 208 434 12 36 chr13 22559380 22559463 -97185435 + (CGAA)n Simple_repeat Simple_repeat 3 83 0 237 211 0 0 chr13 22559464 22559516 -97185382 + G-rich Low_complexity Low_complexity 1 52 0 326 333 39 39 chr13 22559516 22559618 -97185280 + L1M4 LINE L1 3081 3182 -2964 300 212 0 0 chr13 22559619 22559685 -97185213 + G-rich Low_complexity Low_complexity 2 67 0 * 350 312 0 0 chr13 22559684 22559761 -97185137 + A-rich Low_complexity Low_complexity 1 77 0 * 550 89 25 0 chr13 22559748 22559827 -97185071 + (GA)n Simple_repeat Simple_repeat 2 82 0 398 351 94 6 chr13 22559830 22559902 -97184996 + L1M4 LINE L1 875 939 -3678 474 18 0 0 chr13 22559902 22559957 -97184941 + (G)n Simple_repeat Simple_repeat 1 55 0 398 351 94 6 chr13 22559957 22560037 -97184861 + L1M4 LINE L1 939 1011 -3606 534 16 0 0 chr13 22560037 22560100 -97184798 + (G)n Simple_repeat Simple_repeat 1 63 0 398 351 94 6 chr13 22560100 22560172 -97184726 + L1M4 LINE L1 1011 1075 -3542 498 33 0 0 chr13 22560172 22560232 -97184666 + (G)n Simple_repeat Simple_repeat 1 60 0 398 351 94 6 chr13 22560232 22560300 -97184598 + L1M4 LINE L1 1075 3305 -1312 381 43 0 0 chr13 22560300 22560347 -97184551 + (G)n Simple_repeat Simple_repeat 1 47 0 1759 148 20 3 chr13 22561107 22561411 -97183487 + AluSc SINE Alu 1 309 0 525 86 0 14 chr13 22561468 22561538 -97183360 - AluJ/FLAM SINE Alu -236 76 8 228 328 0 0 chr13 22561688 22561755 -97183143 - tRNA-Glu-GAG tRNA tRNA -3 72 6 666 0 0 0 chr13 22562224 22562297 -97182601 - tRNA-Lys-AAG tRNA tRNA -3 73 1 669 14 0 0 chr13 22562639 22562713 -97182185 - tRNA-Val-GTG tRNA tRNA -2 74 1 21 0 0 0 chr13 22563066 22563087 -97181811 + AT_rich Low_complexity Low_complexity 1 21 0 596 368 112 22 chr13 22563463 22563955 -97180943 + L2 LINE L2 1864 2399 -915 332 360 134 7 chr13 22564993 22565276 -97179622 + L2 LINE L2 2950 3268 -4 707 167 92 0 chr13 22565329 22565449 -97179449 + FLAM_C SINE Alu 2 132 -11 21 36 0 0 chr13 22565449 22565477 -97179421 + AT_rich Low_complexity Low_complexity 1 28 0 208 128 51 0 chr13 22565635 22565674 -97179224 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1724 152 3 20 chr13 22566587 22566883 -97178015 - AluSx SINE Alu -21 291 1 207 0 0 0 chr13 22566883 22566906 -97177992 + (T)n Simple_repeat Simple_repeat 1 23 0 1627 126 4 24 chr13 22567013 22567268 -97177630 - AluSq SINE Alu -9 304 55 24 32 0 0 chr13 22567645 22567676 -97177222 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 22568690 22568712 -97176186 + AT_rich Low_complexity Low_complexity 1 22 0 1404 123 88 4 chr13 22568787 22569047 -97175851 - L1MA5 LINE L1 -2 6298 6017 528 220 171 23 chr13 22569124 22569388 -97175510 - L1MC5 LINE L1 -50 7911 7609 323 345 12 25 chr13 22569718 22569968 -97174930 + HERVL LTR ERVL 1516 1800 -3964 362 287 71 96 chr13 22570189 22570683 -97174215 + HERVL LTR ERVL 3851 4395 -1090 479 295 129 16 chr13 22571168 22571576 -97173322 + L2 LINE L2 2581 3044 -269 450 219 24 41 chr13 22572453 22572576 -97172322 + LTR67 LTR ERVL 429 549 -8 1788 164 88 8 chr13 22572775 22573128 -97171770 + MLT1C LTR MaLR 2 382 -85 1845 141 34 0 chr13 22576105 22576396 -97168502 + AluSx SINE Alu 1 301 -11 283 230 142 35 chr13 22576621 22576734 -97168164 + MIR3 SINE MIR 3 127 -81 208 212 71 71 chr13 22576832 22576931 -97167967 + MIR SINE MIR 18 116 -92 1996 116 7 13 chr13 22577495 22577798 -97167100 + AluSx SINE Alu 3 303 -9 505 208 10 10 chr13 22577830 22577931 -97166967 - MIR3 SINE MIR -39 169 69 1966 119 3 17 chr13 22578404 22578699 -97166199 - AluSg SINE Alu -19 291 1 333 136 40 160 chr13 22578762 22578887 -97166011 + MER34 LTR ERV1 433 542 0 1731 154 16 16 chr13 22579387 22579698 -97165200 + AluJb SINE Alu 1 311 -1 1449 182 37 14 chr13 22580404 22580701 -97164197 - AluJb SINE Alu -8 304 1 1547 228 47 17 chr13 22580960 22581363 -97163535 + MLT1C LTR MaLR 53 467 0 564 320 56 9 chr13 22581560 22581791 -97163107 - MIR SINE MIR 0 262 21 309 226 60 12 chr13 22581930 22582014 -97162884 - Charlie4 DNA MER1_type -33 1928 1841 1802 169 10 3 chr13 22583201 22583509 -97161389 - AluJo SINE Alu -2 310 1 696 148 9 0 chr13 22585005 22585113 -97159785 - AluJb SINE Alu -15 297 189 956 147 0 0 chr13 22585113 22585256 -97159642 - AluSq/x SINE Alu -169 143 1 1899 157 0 0 chr13 22585559 22585865 -97159033 - AluJb SINE Alu -4 308 3 2055 108 0 62 chr13 22586823 22587148 -97157750 + AluSx SINE Alu 1 305 -7 272 219 31 0 chr13 22587265 22587393 -97157505 + (TA)n Simple_repeat Simple_repeat 2 133 0 305 145 81 16 chr13 22587397 22587459 -97157439 + L1MCa LINE L1 1998 2063 -4363 653 203 0 17 chr13 22587506 22587624 -97157274 - FLAM_A SINE Alu -14 119 4 4563 153 38 27 chr13 22587628 22587924 -97156974 - L1MB3 LINE L1 -40 6143 5852 1781 130 3 25 chr13 22587924 22588233 -97156665 - AluSg SINE Alu 0 303 1 4563 153 38 27 chr13 22588233 22588695 -97156203 - L1MB3 LINE L1 -331 5852 5371 1844 79 0 20 chr13 22588695 22588947 -97155951 - AluSx SINE Alu -14 298 52 4563 153 38 27 chr13 22588947 22589032 -97155866 - L1MB3 LINE L1 -812 5371 5288 188 274 226 19 chr13 22589046 22589152 -97155746 - MIR SINE MIR -71 191 64 321 322 94 0 chr13 22589208 22589346 -97155552 + MIR SINE MIR 43 190 -67 1651 183 10 0 chr13 22589535 22589824 -97155074 - AluJo SINE Alu -15 297 6 308 331 16 39 chr13 22589972 22590099 -97154799 - MER5A DNA MER1_type 0 189 66 443 291 151 17 chr13 22590245 22590424 -97154474 - MIR SINE MIR -16 246 44 288 0 0 0 chr13 22591377 22591409 -97153489 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 22592052 22592075 -97152823 + AT_rich Low_complexity Low_complexity 1 23 0 733 207 152 21 chr13 22592197 22592448 -97152450 + L1MB7 LINE L1 4906 5201 -945 1775 161 0 22 chr13 22592448 22592759 -97152139 + AluJb SINE Alu 1 304 -8 733 207 152 21 chr13 22592759 22592797 -97152101 + L1MB7 LINE L1 5201 5233 -913 2069 197 100 24 chr13 22592803 22593271 -97151627 + MLT2B2 LTR ERVL 9 512 -3 3906 203 31 13 chr13 22593271 22594153 -97150745 + L1MB7 LINE L1 5236 6132 -52 355 285 59 31 chr13 22594190 22594362 -97150536 + L1ME3 LINE L1 5995 6152 -10 184 307 72 42 chr13 22594416 22594582 -97150316 + L2 LINE L2 2745 2915 -399 437 312 145 0 chr13 22594604 22594790 -97150108 - MIR SINE MIR -30 232 20 23 0 0 0 chr13 22596458 22596481 -97148417 + AT_rich Low_complexity Low_complexity 1 23 0 2309 78 0 7 chr13 22596880 22597186 -97147712 + AluY SINE Alu 1 304 -7 997 143 6 24 chr13 22597218 22597386 -97147512 + AluSc SINE Alu 127 291 -18 1808 166 10 0 chr13 22597425 22597720 -97147178 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr13 22597988 22598023 -97146875 + AT_rich Low_complexity Low_complexity 1 35 0 3063 192 23 158 chr13 22598978 22600267 -97144631 + MER52A LTR ERV1 641 1755 0 231 253 168 32 chr13 22600373 22600468 -97144430 + L2 LINE L2 3201 3308 -5 2274 114 0 13 chr13 22603182 22603488 -97141410 + AluSx SINE Alu 1 302 -10 258 316 53 18 chr13 22603945 22604116 -97140782 - MIR SINE MIR -7 255 79 356 294 28 0 chr13 22605304 22605413 -97139485 + MER81 DNA DNA 3 114 0 221 56 0 28 chr13 22606315 22606351 -97138547 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1311 118 68 27 chr13 22606467 22606688 -97138210 + MER30 DNA MER1_type 1 230 0 609 266 234 13 chr13 22607285 22607679 -97137219 + LTR33A LTR ERVL 5 485 -38 378 165 106 0 chr13 22607880 22607965 -97136933 - MER20 DNA MER1_type -31 188 95 550 239 9 0 chr13 22608062 22608171 -97136727 - FLAM_A SINE Alu -21 121 12 1984 163 3 6 chr13 22608213 22608526 -97136372 - AluSx SINE Alu 0 312 1 2183 133 0 0 chr13 22611729 22612031 -97132867 + AluSg SINE Alu 1 302 -8 859 137 6 99 chr13 22612980 22613162 -97131736 - FRAM SINE Alu -1 165 1 182 309 56 40 chr13 22613208 22613334 -97131564 - L2 LINE L2 0 3272 3145 7317 163 28 27 chr13 22613757 22615794 -97129104 + L1MA8 LINE L1 3868 5923 -368 565 165 18 9 chr13 22616558 22616667 -97128231 + MER119 DNA MER1_type 474 583 0 347 244 142 16 chr13 22617357 22617484 -97127414 - MIR SINE MIR -107 155 13 1319 185 23 15 chr13 22617643 22617898 -97127000 + L1MB3 LINE L1 5428 5685 -494 7730 152 25 3 chr13 22617898 22618387 -97126511 - L1PA11 LINE L1 -3 6171 5694 2319 108 7 0 chr13 22618387 22618684 -97126214 - AluSq SINE Alu -14 299 1 7730 152 25 3 chr13 22618684 22620355 -97124543 - L1MB3 LINE L1 -480 5694 3989 2669 182 2 17 chr13 22620363 22620880 -97124018 + L1MB3 LINE L1 5675 6183 0 193 322 91 58 chr13 22621005 22621126 -97123772 + MIR SINE MIR 118 242 -20 257 342 53 0 chr13 22621325 22621439 -97123459 + L2 LINE L2 3185 3304 -9 1538 79 19 0 chr13 22622114 22622329 -97122569 + L1PA11 LINE L1 5956 6174 0 219 139 0 0 chr13 22622750 22622786 -97122112 + (A)n Simple_repeat Simple_repeat 1 36 0 236 94 0 0 chr13 22623178 22623254 -97121644 - Alu SINE Alu 0 323 248 2238 157 107 25 chr13 22623254 22623554 -97121344 + L1MC2 LINE L1 5820 6177 -167 2217 122 0 0 chr13 22623554 22623841 -97121057 + AluSc SINE Alu 1 287 -22 2238 157 107 25 chr13 22623841 22624025 -97120873 + L1MC2 LINE L1 6177 6344 0 324 0 0 0 chr13 22624225 22624261 -97120637 + (TG)n Simple_repeat Simple_repeat 1 36 0 249 286 71 52 chr13 22625021 22625231 -97119667 + MIR SINE MIR 46 259 -3 255 289 72 0 chr13 22625285 22625368 -97119530 - MIR SINE MIR -167 95 7 366 323 161 53 chr13 22625485 22626105 -97118793 + L3 LINE CR1 888 1574 -3 1131 140 0 0 chr13 22626107 22626264 -97118634 + AluJb SINE Alu 4 160 -152 402 142 0 0 chr13 22626267 22626343 -97118555 + Alu SINE Alu 241 299 -3 2212 90 4 0 chr13 22627000 22627300 -97117598 + AluSg SINE Alu 1 301 0 953 221 143 52 chr13 22627529 22627950 -97116948 + LTR37B LTR ERV1 10 468 0 1527 160 0 16 chr13 22628542 22628792 -97116106 - AluJb SINE Alu -16 296 51 30 45 0 0 chr13 22629318 22629362 -97115536 + AT_rich Low_complexity Low_complexity 1 44 0 3454 160 39 20 chr13 22629686 22630350 -97114548 + L1MB7 LINE L1 5495 6171 -13 1846 129 126 55 chr13 22633022 22633430 -97111468 + MER61C LTR ERV1 7 434 0 2603 58 0 3 chr13 22633485 22633793 -97111105 + AluY SINE Alu 1 307 -4 1238 134 5 5 chr13 22633820 22634014 -97110884 - Tigger1 DNA MER2_type 0 2418 2225 734 183 7 22 chr13 22634016 22634153 -97110745 + AluJo SINE Alu 2 136 -176 4772 130 36 0 chr13 22634169 22634909 -97109989 - Tigger1 DNA MER2_type -182 2236 1470 29 0 0 0 chr13 22635315 22635344 -97109554 + AT_rich Low_complexity Low_complexity 1 29 0 640 227 0 7 chr13 22635345 22635486 -97109412 - FLAM_C SINE Alu -2 141 2 2274 108 3 0 chr13 22637574 22637870 -97107028 + AluSg SINE Alu 1 297 -13 1614 225 36 0 chr13 22638209 22638542 -97106356 - MER7A DNA MER2_type -1 345 3 343 282 85 54 chr13 22638721 22638980 -97105918 - L1M4 LINE L1 -2985 3161 2895 21 36 0 0 chr13 22639293 22639321 -97105577 + AT_rich Low_complexity Low_complexity 1 28 0 1690 208 73 32 chr13 22639446 22639517 -97105381 + L1ME3A LINE L1 5391 5458 -712 2456 190 48 18 chr13 22639517 22640022 -97104876 + MLT2B1 LTR ERVL 1 520 0 1690 208 73 32 chr13 22640022 22640154 -97104744 + L1ME3A LINE L1 5458 5583 -587 1496 206 94 133 chr13 22640154 22640911 -97103987 + LTR8A LTR ERV1 1 727 0 1690 208 73 32 chr13 22640911 22641239 -97103659 + L1ME3A LINE L1 5583 5945 -225 1073 180 46 14 chr13 22641239 22641456 -97103442 + AluJo SINE Alu 81 304 -8 610 241 116 15 chr13 22641456 22641655 -97103243 + L1ME3A LINE L1 5952 6170 0 371 254 84 14 chr13 22641755 22641897 -97103001 - MIR SINE MIR -32 230 79 1323 157 17 8 chr13 22642773 22643009 -97101889 - L1MA6 LINE L1 -231 6069 5832 1260 106 55 0 chr13 22643009 22643204 -97101694 + L1MA6 LINE L1 6091 6300 0 2267 117 0 0 chr13 22643213 22643522 -97101376 + AluSc SINE Alu 1 309 0 455 301 11 22 chr13 22644886 22645069 -97099829 + MER5A DNA MER1_type 3 183 -6 231 242 32 0 chr13 22647566 22647628 -97097270 + LTR67 LTR ERVL 4 67 -490 728 249 47 9 chr13 22648979 22649192 -97095706 + MER58A DNA MER1_type 1 221 -3 2461 65 0 7 chr13 22649531 22649825 -97095073 + AluY SINE Alu 1 292 -19 2142 113 0 7 chr13 22650036 22650341 -97094557 + AluSg SINE Alu 1 303 0 475 0 0 71 chr13 22650373 22650443 -97094455 - L1PA6 LINE L1 0 6154 6090 1295 152 110 132 chr13 22650567 22651029 -97093869 - L1MB2 LINE L1 -239 5932 5481 2120 118 0 0 chr13 22651072 22651354 -97093544 - AluSx SINE Alu -32 280 1 329 240 88 104 chr13 22652537 22652729 -97092169 + MER5A DNA MER1_type 1 189 0 972 109 0 8 chr13 22653016 22653144 -97091754 + FLAM_C SINE Alu 1 127 -16 341 280 171 21 chr13 22654118 22654311 -97090587 - MIR SINE MIR -25 237 16 557 60 0 12 chr13 22655930 22656013 -97088885 + (GA)n Simple_repeat Simple_repeat 2 83 0 243 228 120 0 chr13 22656748 22656840 -97088058 + L1ME4a LINE L1 6006 6108 -13 1514 195 14 34 chr13 22656984 22657119 -97087779 + AluJo SINE Alu 1 137 -175 1884 147 0 63 chr13 22657119 22657438 -97087460 + AluJo SINE Alu 3 301 -11 1514 195 14 34 chr13 22657438 22657594 -97087304 + AluJo SINE Alu 137 286 -26 411 56 0 0 chr13 22657594 22657648 -97087250 + (CATA)n Simple_repeat Simple_repeat 2 55 0 321 360 85 0 chr13 22657695 22657906 -97086992 + MIR SINE MIR 26 254 -8 2429 91 0 0 chr13 22658271 22658567 -97086331 - AluSx SINE Alu -16 296 1 260 319 42 7 chr13 22658789 22658933 -97085965 - MER103 DNA DNA -12 154 6 607 213 124 6 chr13 22658991 22659146 -97085752 + MER5A DNA MER1_type 4 183 -6 882 209 0 16 chr13 22660079 22660261 -97084637 + AluJb SINE Alu 130 308 -4 1817 166 3 0 chr13 22660467 22660756 -97084142 + AluJo SINE Alu 7 296 -16 560 68 0 0 chr13 22661913 22661987 -97082911 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 226 198 185 25 chr13 22662089 22662170 -97082728 + MIR SINE MIR 83 176 -86 865 159 8 0 chr13 22662279 22662411 -97082487 + FLAM_C SINE Alu 1 133 0 517 275 8 8 chr13 22662437 22662568 -97082330 - MIR SINE MIR -14 248 118 318 254 0 0 chr13 22663107 22663174 -97081724 + L2 LINE L2 3201 3267 -5 382 278 26 17 chr13 22663181 22663296 -97081602 - MIR SINE MIR -69 139 24 2697 49 0 0 chr13 22663388 22663694 -97081204 - AluY SINE Alu -5 306 1 23 33 0 0 chr13 22664172 22664202 -97080696 + AT_rich Low_complexity Low_complexity 1 30 0 792 178 79 35 chr13 22664220 22664422 -97080476 - L1MB2 LINE L1 -36 6135 5925 233 95 0 24 chr13 22664522 22664564 -97080334 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 470 255 226 41 chr13 22664567 22665195 -97079703 - L2 LINE L2 -50 3263 2479 * 519 263 11 68 chr13 22665179 22665369 -97079529 - MIR3 SINE MIR -11 197 19 1033 183 6 0 chr13 22665546 22665721 -97079177 - FRAM SINE Alu -2 174 1 228 398 17 0 chr13 22668350 22668468 -97076430 - MIR SINE MIR -123 139 20 226 94 0 0 chr13 22668905 22668937 -97075961 + U2 snRNA snRNA 1 32 -156 1867 130 0 11 chr13 22669958 22670228 -97074670 + AluSx SINE Alu 35 301 -11 259 316 140 35 chr13 22670374 22670545 -97074353 - MIR SINE MIR -65 197 9 198 128 0 0 chr13 22671038 22671077 -97073821 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 1019 124 7 0 chr13 22671088 22671225 -97073673 - AluSq SINE Alu -39 274 137 2370 97 3 0 chr13 22671225 22671523 -97073375 - AluSq SINE Alu -12 301 3 1768 185 0 7 chr13 22672715 22673007 -97071891 - AluJo SINE Alu -22 290 1 484 240 281 20 chr13 22673655 22673851 -97071047 - MIR SINE MIR -15 247 1 605 251 161 5 chr13 22675034 22675233 -97069665 - MIR SINE MIR 0 262 33 2947 16 0 0 chr13 22677282 22677600 -97067298 - AluYb8 SINE Alu 0 318 1 2349 104 7 0 chr13 22678260 22678567 -97066331 + AluSx SINE Alu 1 309 -3 296 251 277 26 chr13 22680718 22680873 -97064025 + MIR SINE MIR 6 121 -141 2017 161 0 3 chr13 22680873 22681171 -97063727 + AluJb SINE Alu 1 297 -15 296 251 277 26 chr13 22681171 22681210 -97063688 + MIR SINE MIR 121 249 -13 282 29 0 0 chr13 22681210 22681245 -97063653 + (TC)n Simple_repeat Simple_repeat 2 36 0 1237 178 26 42 chr13 22681263 22681527 -97063371 - MIR SINE MIR -1 261 2 248 372 0 12 chr13 22681722 22681808 -97063090 - MIR3 SINE MIR -11 197 113 243 21 0 64 chr13 22682551 22682598 -97062300 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1584 178 8 4 chr13 22682602 22682866 -97062032 - AluJo SINE Alu -30 282 18 508 206 163 14 chr13 22683480 22683621 -97061277 - MIR SINE MIR -9 253 92 333 307 161 21 chr13 22684361 22684641 -97060257 - L3 LINE CR1 -19 1558 1240 228 211 18 0 chr13 22685706 22685763 -97059135 - MER94 DNA DNA -75 59 2 366 228 11 33 chr13 22686529 22686621 -97058277 - MER5B DNA MER1_type 0 178 89 192 271 21 0 chr13 22686653 22686701 -97058197 + L3 LINE CR1 862 910 -667 722 259 51 22 chr13 22687406 22687632 -97057266 - MIR SINE MIR -39 223 1 218 345 52 17 chr13 22687674 22687790 -97057108 + MIR SINE MIR 120 239 -23 1337 131 10 5 chr13 22687835 22688034 -97056864 + AluJb SINE Alu 113 312 0 2228 118 7 0 chr13 22689168 22689473 -97055425 + AluSx SINE Alu 1 307 -5 1935 173 42 75 chr13 22690084 22690512 -97054386 + MLT2D LTR ERVL 1 414 0 7490 37 6 0 chr13 22692123 22693585 -97051313 + L1PA4 LINE L1 4688 6152 -3 5992 178 40 3 chr13 22693672 22695132 -97049766 - ERVL LTR ERVL -66 5698 4130 2143 73 42 35 chr13 22695269 22695556 -97049342 + AluY SINE Alu 1 289 -22 1980 112 4 0 chr13 22695556 22695821 -97049077 + AluSg1 SINE Alu 27 294 -15 225 0 0 0 chr13 22696411 22696436 -97048462 + (TA)n Simple_repeat Simple_repeat 1 25 0 795 22 0 0 chr13 22696436 22696527 -97048371 - L1PA5 LINE L1 -16 6138 6048 2442 51 0 29 chr13 22700365 22700678 -97044220 - AluY SINE Alu -7 304 1 410 334 64 15 chr13 22700822 22701063 -97043835 - L1M4c LINE L1 -4383 2000 1422 555 223 23 0 chr13 22701063 22701193 -97043705 - L1MA10 LINE L1 -1 6333 6201 2181 107 0 0 chr13 22701193 22701474 -97043424 + AluSg SINE Alu 1 281 -29 7016 226 76 15 chr13 22701527 22704464 -97040434 - L1ME1 LINE L1 -151 6015 2894 991 140 18 12 chr13 22704465 22704629 -97040269 + THE1C LTR MaLR 1 165 -210 383 202 50 20 chr13 22705553 22705652 -97039246 + MLT1C-int LTR MaLR 1269 1370 -1 1203 199 205 13 chr13 22705653 22706039 -97038859 + MLT1C LTR MaLR 1 460 -7 1129 115 0 12 chr13 22706121 22706286 -97038612 + L1PA8 LINE L1 6001 6163 -9 812 168 0 0 chr13 22707669 22707800 -97037098 + FLAM_C SINE Alu 3 133 0 1978 167 0 0 chr13 22707833 22708139 -97036759 + AluJb SINE Alu 1 306 -6 331 346 82 0 chr13 22708524 22708706 -97036192 + MIR SINE MIR 14 210 -52 1855 171 0 7 chr13 22708962 22709261 -97035637 - AluJb SINE Alu -15 297 1 780 253 127 0 chr13 22709261 22709498 -97035400 + MER58B DNA MER1_type 75 341 0 218 56 28 0 chr13 22710637 22710673 -97034225 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 386 239 57 18 chr13 22710753 22710962 -97033936 - Charlie7 DNA MER1_type 0 2612 2317 21 0 0 0 chr13 22710969 22710990 -97033908 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr13 22711233 22711263 -97033635 + (CA)n Simple_repeat Simple_repeat 2 31 0 228 125 0 0 chr13 22711497 22711529 -97033369 - Charlie7 DNA MER1_type -1479 1133 1102 184 244 78 44 chr13 22712077 22712167 -97032731 + L2 LINE L2 3164 3256 -16 218 260 10 62 chr13 22712169 22712265 -97032633 + (TGGG)n Simple_repeat Simple_repeat 2 92 0 2880 162 53 18 chr13 22712932 22713494 -97031404 + L1MB3 LINE L1 5601 6182 -1 21 0 0 0 chr13 22713494 22713515 -97031383 + AT_rich Low_complexity Low_complexity 1 21 0 1483 158 11 67 chr13 22713668 22713818 -97031080 - AluJb SINE Alu -24 288 131 192 40 0 0 chr13 22713818 22713843 -97031055 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 114 42 0 chr13 22713844 22714108 -97030790 - AluSq SINE Alu -30 283 9 1483 158 11 67 chr13 22714108 22714239 -97030659 - AluJb SINE Alu -180 132 21 333 250 11 11 chr13 22715165 22715257 -97029641 - Tigger1 DNA MER2_type -857 1561 1470 413 137 52 0 chr13 22715257 22715410 -97029488 + (TATAA)n Simple_repeat Simple_repeat 4 164 0 353 175 44 17 chr13 22715415 22715700 -97029198 + (TTATA)n Simple_repeat Simple_repeat 1 292 0 31 0 0 0 chr13 22715700 22715731 -97029167 + AT_rich Low_complexity Low_complexity 1 31 0 336 80 68 51 chr13 22715731 22715907 -97028991 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 582 85 73 0 chr13 22715903 22716067 -97028831 + (TA)n Simple_repeat Simple_repeat 1 176 0 298 148 49 16 chr13 22716085 22716207 -97028691 + (TA)n Simple_repeat Simple_repeat 1 126 0 2201 84 0 11 chr13 22716215 22716499 -97028399 - AluY SINE Alu -30 281 1 8998 123 42 20 chr13 22716499 22717331 -97027567 - Tigger1 DNA MER2_type -939 1479 601 2076 115 34 3 chr13 22717331 22717627 -97027271 - AluSx SINE Alu -7 305 1 8998 123 42 20 chr13 22717627 22718231 -97026667 - Tigger1 DNA MER2_type -1817 601 12 1907 173 42 75 chr13 22719513 22719941 -97024957 + MLT2D LTR ERVL 1 414 0 219 299 120 8 chr13 22721654 22721771 -97023127 + MIR SINE MIR 81 210 -52 1766 79 9 0 chr13 22721962 22722190 -97022708 + MER30 DNA MER1_type 1 230 0 2203 168 23 44 chr13 22722970 22723405 -97021493 + MSTB LTR MaLR 1 426 0 1365 88 0 6 chr13 22723683 22723854 -97021044 - AluSx SINE Alu -142 170 1 5039 126 23 88 chr13 22723854 22724870 -97020028 + Tigger3b DNA MER2_type 282 1231 0 4046 208 45 13 chr13 22724879 22726030 -97018868 + L1MB8 LINE L1 4316 5505 -675 1111 176 24 0 chr13 22726030 22726240 -97018658 + L1MB2 LINE L1 5950 6164 -7 3451 161 24 15 chr13 22726270 22726929 -97017969 + L1MB8 LINE L1 5514 6178 0 265 108 0 0 chr13 22727183 22727220 -97017678 - U2 snRNA snRNA -151 37 1 1726 185 18 0 chr13 22727536 22727822 -97017076 + AluJo SINE Alu 1 291 -21 1002 171 37 180 chr13 22727822 22727951 -97016947 + MLT1A2 LTR MaLR 34 89 -285 1461 133 41 5 chr13 22727951 22728169 -97016729 + AluJo SINE Alu 14 239 -73 1002 171 37 180 chr13 22728169 22728366 -97016532 + MLT1A2 LTR MaLR 89 313 -61 1704 140 92 4 chr13 22728625 22728897 -97016001 + AluSx SINE Alu 1 296 -16 267 301 21 11 chr13 22729899 22729992 -97014906 + L2 LINE L2 3179 3272 0 211 64 21 43 chr13 22730417 22730464 -97014434 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4510 255 129 32 chr13 22730513 22730811 -97014087 + L1MD1 LINE L1 2618 2886 -3260 2278 118 0 6 chr13 22730811 22731124 -97013774 + AluSx SINE Alu 1 311 -1 4510 255 129 32 chr13 22731124 22732284 -97012614 + L1MD1 LINE L1 2886 3932 -2214 342 0 0 0 chr13 22732284 22732322 -97012576 + (CA)n Simple_repeat Simple_repeat 1 38 0 4510 255 129 32 chr13 22732322 22732390 -97012508 + L1MD1 LINE L1 3932 3992 -2154 1463 113 0 10 chr13 22732390 22732594 -97012304 + AluSc SINE Alu 83 284 -25 4510 255 129 32 chr13 22732594 22733433 -97011465 + L1MD1 LINE L1 3992 5261 -885 1059 187 93 45 chr13 22733430 22733719 -97011179 + L1MD1 LINE L1 5855 6157 -85 * 186 143 0 0 chr13 22736697 22736732 -97008166 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 28 71 0 0 chr13 22736795 22736851 -97008047 + AT_rich Low_complexity Low_complexity 1 56 0 200 111 28 0 chr13 22737816 22737852 -97007046 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 483 288 113 0 chr13 22738548 22738708 -97006190 + MER5B DNA MER1_type 1 178 0 817 207 0 0 chr13 22738720 22738870 -97006028 + MLT1A1 LTR MaLR 1 150 -215 618 238 33 0 chr13 22738950 22739101 -97005797 - MER5A DNA MER1_type 0 189 34 210 310 93 81 chr13 22739175 22739498 -97005400 + L2 LINE L2 2896 3222 -50 447 269 39 19 chr13 22741100 22741256 -97003642 - MER105 DNA DNA -21 183 25 226 280 80 0 chr13 22741926 22742001 -97002897 + MIR SINE MIR 62 142 -66 1814 148 7 30 chr13 22742273 22742570 -97002328 - AluJo SINE Alu -22 290 1 537 229 7 33 chr13 22742904 22743057 -97001841 + MIR SINE MIR 104 252 -10 2199 106 7 7 chr13 22745142 22745445 -96999453 + AluSx SINE Alu 1 303 -9 1209 219 33 17 chr13 22745967 22746269 -96998629 + L1MC2 LINE L1 6029 6335 -9 304 217 85 31 chr13 22746274 22746403 -96998495 + L1ME4a LINE L1 5984 6119 -2 200 308 64 41 chr13 22746832 22747004 -96997894 + MIR SINE MIR 81 256 -6 188 339 54 32 chr13 22747107 22747293 -96997605 + MIR3 SINE MIR 3 192 -16 509 326 32 5 chr13 22747670 22747857 -96997041 - MIR SINE MIR -25 237 46 2544 41 3 25 chr13 22748089 22748404 -96996494 + AluY SINE Alu 1 308 -3 306 275 11 11 chr13 22748918 22749009 -96995889 + MIR SINE MIR 172 262 0 3622 134 28 13 chr13 22749407 22750021 -96994877 + L1MB3 LINE L1 5559 6181 -2 315 267 100 0 chr13 22750446 22750536 -96994362 + MIR SINE MIR 56 154 -108 1936 132 35 0 chr13 22750541 22750829 -96994069 + AluSq SINE Alu 3 300 -13 1032 221 38 38 chr13 22750837 22751099 -96993799 + MLT1E LTR MaLR 332 593 0 1815 240 73 22 chr13 22751101 22751647 -96993251 - L1ME3 LINE L1 -104 6058 5485 326 250 23 0 chr13 22751650 22751738 -96993160 + MIR SINE MIR 117 206 -56 193 321 86 0 chr13 22751795 22751876 -96993022 - MIR SINE MIR -166 96 9 197 132 26 0 chr13 22752818 22752856 -96992042 + GA-rich Low_complexity Low_complexity 1 39 0 1320 162 46 12 chr13 22753378 22753619 -96991279 + MLT1A1 LTR MaLR 116 364 -1 775 245 125 14 chr13 22753858 22754066 -96990832 - MIR SINE MIR -14 248 18 423 281 136 25 chr13 22754236 22754435 -96990463 - MIR SINE MIR -14 248 28 352 263 73 47 chr13 22754476 22754667 -96990231 + MIR SINE MIR 16 207 -55 1818 189 20 85 chr13 22754706 22755202 -96989696 + MLT2C2 LTR ERVL 1 464 0 378 296 118 10 chr13 22756269 22756472 -96988426 + MER112 DNA MER1_type 3 227 -33 2946 147 68 9 chr13 22757532 22758076 -96986822 + L1MB3 LINE L1 5599 6174 -9 206 240 20 0 chr13 22761232 22761282 -96983616 + L2 LINE L2 3210 3260 -12 223 325 34 17 chr13 22761451 22761568 -96983330 + MIR SINE MIR 42 160 -102 312 247 169 0 chr13 22761739 22761828 -96983070 - MIR SINE MIR -82 180 77 246 244 252 9 chr13 22762444 22762559 -96982339 + LTR16C LTR ERVL 71 213 -278 529 200 25 0 chr13 22762581 22762701 -96982197 + LTR16C LTR ERVL 363 485 -6 375 163 11 22 chr13 22762939 22763031 -96981867 + GA-rich Low_complexity Low_complexity 3 93 0 1500 225 38 40 chr13 22763126 22763548 -96981350 + L1MC4a LINE L1 7346 7766 -42 685 140 0 0 chr13 22764378 22764478 -96980420 - FLAM_C SINE Alu -33 110 11 1990 126 7 0 chr13 22764491 22764793 -96980105 - AluSx SINE Alu -8 304 1 2294 66 0 7 chr13 22765600 22765901 -96978997 - AluY SINE Alu -12 299 1 1326 219 111 28 chr13 22766298 22766722 -96978176 + MLT1C LTR MaLR 1 459 -8 322 322 71 95 chr13 22766767 22766795 -96978103 + L1MC/D LINE L1 5322 5349 -2459 1700 168 0 25 chr13 22766795 22767110 -96977788 + AluJo SINE Alu 1 307 -5 322 322 71 95 chr13 22767110 22767364 -96977534 + L1MC/D LINE L1 5349 5597 -2211 2003 106 7 23 chr13 22767365 22767668 -96977230 - AluSx SINE Alu -14 298 1 1576 148 7 35 chr13 22767912 22768202 -96976696 - AluSx SINE Alu -22 290 9 516 248 36 22 chr13 22768259 22768396 -96976502 + MER74B LTR ERVL 67 205 -417 264 229 0 0 chr13 22768446 22768494 -96976404 - MIR SINE MIR -82 126 79 2634 26 0 3 chr13 22768557 22768869 -96976029 + AluYa5 SINE Alu 1 311 0 244 156 16 94 chr13 22768920 22768984 -96975914 - L2 LINE L2 0 3272 3214 263 175 18 0 chr13 22769125 22769182 -96975716 + CT-rich Low_complexity Low_complexity 1 58 0 2074 103 10 17 chr13 22769184 22769486 -96975412 - AluSp SINE Alu -2 311 12 2410 60 0 3 chr13 22769968 22770269 -96974629 - AluY SINE Alu -9 302 3 1811 188 135 12 chr13 22770479 22770895 -96974003 - MLT1C LTR MaLR 0 467 1 1934 148 0 7 chr13 22772685 22772995 -96971903 - AluSx SINE Alu -4 308 1 198 266 21 128 chr13 22773198 22773292 -96971606 - MIR SINE MIR -102 106 23 561 274 64 95 chr13 22773362 22773720 -96971178 - MLT1J LTR MaLR -54 457 111 279 178 41 27 chr13 22773659 22773732 -96971166 - LTR67 LTR ERVL -380 177 104 * 419 316 73 10 chr13 22774455 22774661 -96970237 - MARNA DNA Mariner -46 540 322 22 0 0 0 chr13 22776935 22776957 -96967941 + AT_rich Low_complexity Low_complexity 1 22 0 652 256 94 30 chr13 22778130 22778535 -96966363 + LTR33 LTR ERVL 1 467 -54 255 295 121 23 chr13 22778586 22778759 -96966139 - MIR SINE MIR -63 199 10 1457 154 39 29 chr13 22778827 22779106 -96965792 + AluJo SINE Alu 1 282 -30 735 277 98 5 chr13 22784977 22785201 -96959697 - MIR SINE MIR 0 262 18 186 217 0 43 chr13 22785699 22785745 -96959153 + L2 LINE L2 1402 1445 -1869 346 284 0 87 chr13 22786378 22786480 -96958418 + MIR SINE MIR 59 150 -112 2131 106 0 6 chr13 22786480 22786791 -96958107 + AluY SINE Alu 1 309 -2 346 284 0 87 chr13 22786791 22786815 -96958083 + MIR SINE MIR 150 174 -88 822 238 17 11 chr13 22786996 22787177 -96957721 + MER5A DNA MER1_type 1 182 -7 1733 182 21 49 chr13 22788584 22788969 -96955929 - MLT1A2 LTR MaLR 0 374 1 425 286 59 20 chr13 22788996 22789199 -96955699 + MIR SINE MIR 42 252 -10 1298 204 106 0 chr13 22789341 22789606 -96955292 + MLT1A1 LTR MaLR 73 365 0 1639 259 21 42 chr13 22789608 22790041 -96954857 + MLT1F LTR MaLR 61 485 -57 2006 133 56 19 chr13 22790041 22790363 -96954535 - MER1B DNA MER1_type 0 337 4 1639 259 21 42 chr13 22790363 22790407 -96954491 + MLT1F LTR MaLR 485 528 -14 2157 119 3 0 chr13 22790725 22791036 -96953862 + AluSp SINE Alu 1 312 -1 238 283 0 0 chr13 22791285 22791338 -96953560 + (CA)n Simple_repeat Simple_repeat 1 53 0 2155 117 0 0 chr13 22791788 22792097 -96952801 - AluSc SINE Alu 0 309 1 1452 104 0 5 chr13 22792165 22792366 -96952532 - AluSx SINE Alu -112 200 1 192 247 0 41 chr13 22792662 22792735 -96952163 + L2 LINE L2 2013 2082 -1232 199 107 0 0 chr13 22793082 22793110 -96951788 - L2 LINE L2 -1 3271 3244 195 42 0 0 chr13 22793112 22793136 -96951762 + (TG)n Simple_repeat Simple_repeat 1 24 0 260 222 287 9 chr13 22793555 22793663 -96951235 - L2 LINE L2 -1254 2060 1923 231 310 99 30 chr13 22793706 22793938 -96950960 + L1M4 LINE L1 3596 3843 -2303 1775 157 7 0 chr13 22793981 22794261 -96950637 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr13 22794447 22794469 -96950429 + AT_rich Low_complexity Low_complexity 1 22 0 1308 200 48 10 chr13 22794478 22794768 -96950130 + AluJo SINE Alu 1 301 -11 357 338 38 8 chr13 22794958 22795091 -96949807 + L2 LINE L2 3134 3270 -2 783 229 60 28 chr13 22795706 22795955 -96948943 + L1ME LINE L1 5539 5795 -326 4000 68 9 4 chr13 22796199 22796725 -96948173 + L1PA6 LINE L1 5625 6153 -1 1259 180 56 88 chr13 22797383 22797760 -96947138 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr13 22798422 22798449 -96946449 + (T)n Simple_repeat Simple_repeat 1 27 0 1403 207 56 3 chr13 22799354 22799639 -96945259 + AluJb SINE Alu 1 300 -2 2376 135 25 3 chr13 22799639 22800014 -96944884 - MLT1B LTR MaLR -8 388 1 199 279 63 76 chr13 22800120 22800199 -96944699 - L2 LINE L2 -1 3312 3235 1737 137 0 53 chr13 22800248 22800547 -96944351 + AluJb SINE Alu 1 283 -29 216 0 0 0 chr13 22800550 22800574 -96944324 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 216 243 57 14 chr13 22800924 22800994 -96943904 - MIR SINE MIR -7 255 183 257 0 30 0 chr13 22802128 22802161 -96942737 + (TC)n Simple_repeat Simple_repeat 1 34 0 977 172 12 6 chr13 22802184 22802347 -96942551 - FRAM SINE Alu -2 164 1 4568 189 25 16 chr13 22802655 22802913 -96941985 + L1MB2 LINE L1 4899 5153 -1018 2072 126 3 0 chr13 22802913 22803215 -96941683 + AluSx SINE Alu 1 303 -9 4568 189 25 16 chr13 22803215 22804215 -96940683 + L1MB2 LINE L1 5153 6171 0 377 247 59 26 chr13 22804972 22805097 -96939801 + MIR SINE MIR 19 152 -75 237 167 0 0 chr13 22805196 22805250 -96939648 + GA-rich Low_complexity Low_complexity 1 54 0 269 240 52 65 chr13 22805540 22805694 -96939204 - L1ME3A LINE L1 0 6170 6019 361 305 41 25 chr13 22805839 22806036 -96938862 - L1MC5 LINE L1 -440 7521 7322 609 249 116 6 chr13 22806157 22806338 -96938560 + MER3 DNA MER1_type 9 209 0 529 252 51 34 chr13 22806339 22806573 -96938325 - L1MC5 LINE L1 -761 7200 6963 747 192 99 29 chr13 22806578 22806734 -96938164 - AluJo SINE Alu -9 303 133 2241 111 0 0 chr13 22806734 22807040 -96937858 - AluSc SINE Alu -3 306 1 747 192 99 29 chr13 22807040 22807055 -96937843 - AluJo SINE Alu -179 133 120 1545 165 6 115 chr13 22807072 22807411 -96937487 - AluJb SINE Alu 0 302 1 313 259 140 57 chr13 22807413 22807606 -96937292 - L1M4c LINE L1 -5298 1086 878 438 321 207 0 chr13 22808297 22808490 -96936408 + MIR SINE MIR 28 260 -2 674 306 79 45 chr13 22808537 22809089 -96935809 + L2 LINE L2 2481 3114 -199 1886 105 28 14 chr13 22809089 22809374 -96935524 - AluSx SINE Alu -23 289 1 674 306 79 45 chr13 22809374 22809576 -96935322 + L2 LINE L2 3114 3308 -5 3882 167 23 20 chr13 22810090 22810827 -96934071 - L1MB3 LINE L1 -2 6181 5443 877 207 0 6 chr13 22810910 22811074 -96933824 - FAM SINE Alu -22 163 1 21 57 0 0 chr13 22811089 22811124 -96933774 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 22811968 22811999 -96932899 + AT_rich Low_complexity Low_complexity 1 31 0 4842 240 42 24 chr13 22813505 22813879 -96931019 + L1M4 LINE L1 11 377 -6165 1726 149 43 4 chr13 22813879 22814160 -96930738 - AluSx SINE Alu -20 292 1 4842 240 42 24 chr13 22814160 22815033 -96929865 + L1M4 LINE L1 377 1281 -5261 240 306 176 23 chr13 22815034 22815380 -96929518 - L2 LINE L2 -694 2620 2222 1417 188 41 80 chr13 22815584 22815946 -96928952 + MLT1A1 LTR MaLR 1 348 -17 437 217 19 9 chr13 22815960 22816066 -96928832 + MER53 DNA DNA 34 140 -49 421 306 56 19 chr13 22817288 22817448 -96927450 + MIR SINE MIR 1 166 -96 767 186 70 12 chr13 22819349 22819521 -96925377 - MER53 DNA DNA 0 189 8 248 247 161 21 chr13 22820158 22820251 -96924647 - L3 LINE CR1 -375 1202 1097 1929 135 0 13 chr13 22820261 22820565 -96924333 + AluSx SINE Alu 1 300 -12 186 395 0 12 chr13 22820704 22820790 -96924108 - L3 LINE CR1 -634 943 859 809 108 0 17 chr13 22820824 22820944 -96923954 - FLAM_C SINE Alu -19 124 7 2865 3 0 0 chr13 22822833 22823149 -96921749 - AluYb8 SINE Alu -2 316 1 185 378 22 0 chr13 22823401 22823491 -96921407 + MIR SINE MIR 57 148 -114 293 316 75 23 chr13 22823644 22823818 -96921080 + L1MC/D LINE L1 5533 5715 -2093 25 0 0 0 chr13 22823959 22823984 -96920914 + AT_rich Low_complexity Low_complexity 1 25 0 858 209 16 21 chr13 22823990 22824177 -96920721 - AluJo SINE Alu -10 302 117 180 0 0 0 chr13 22824350 22824370 -96920528 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 374 254 90 8 chr13 22825860 22825994 -96918904 + L1MA9 LINE L1 5996 6140 -172 384 340 107 40 chr13 22826249 22826853 -96918045 + L2 LINE L2 2639 3269 -3 466 322 84 10 chr13 22827132 22827334 -96917564 + MIR SINE MIR 12 228 -34 250 257 14 57 chr13 22827383 22827453 -96917445 - MIR SINE MIR -180 82 16 754 252 33 0 chr13 22828048 22828262 -96916636 - L1PA16 LINE L1 -1 6165 5945 331 56 0 19 chr13 22828404 22828458 -96916440 - AluSc SINE Alu 0 299 247 521 291 132 24 chr13 22830312 22830563 -96914335 - L2 LINE L2 -5 3308 3031 * 526 269 59 90 chr13 22830533 22830590 -96914308 + MIR SINE MIR 14 71 -191 1911 186 38 28 chr13 22830590 22830987 -96913911 + MER57A LTR ERV1 1 401 -2 526 269 59 90 chr13 22830987 22831185 -96913713 + MIR SINE MIR 71 261 -1 2475 139 67 5 chr13 22831212 22831658 -96913240 + L1MB2 LINE L1 5689 6162 -9 235 297 59 30 chr13 22831753 22831854 -96913044 + MER91C DNA MER1_type 29 132 -8 510 264 76 156 chr13 22831891 22832494 -96912404 - LTR67 LTR ERVL -1 556 2 367 323 83 0 chr13 22834165 22834298 -96910600 + MIR SINE MIR 93 236 -26 1242 254 59 67 chr13 22834610 22835134 -96909764 - MLT2B1 LTR ERVL 0 520 1 3306 171 11 19 chr13 22836043 22836674 -96908224 + L1PA13 LINE L1 4127 4754 -1392 5555 98 44 43 chr13 22836674 22837683 -96907215 + L1PA13 LINE L1 5151 6161 -2 3306 171 11 19 chr13 22837683 22837695 -96907203 + L1PA13 LINE L1 4754 4765 -1381 1935 123 3 0 chr13 22837704 22837988 -96906910 + AluSx SINE Alu 23 307 -5 433 320 39 0 chr13 22839261 22839389 -96905509 + MIR SINE MIR 71 203 -59 556 330 56 26 chr13 22839609 22839842 -96905056 - MIR SINE MIR -2 260 21 1376 187 88 38 chr13 22840646 22840949 -96903949 - L1MD3 LINE L1 -232 7763 7440 2008 194 14 6 chr13 22840949 22841309 -96903589 - MLT1A1 LTR MaLR -2 363 1 1376 187 88 38 chr13 22841309 22841347 -96903551 - L1MD3 LINE L1 -555 7440 7405 239 323 135 51 chr13 22841532 22842223 -96902675 - L2 LINE L2 -2358 956 208 639 174 25 0 chr13 22842273 22842394 -96902504 + L1MA8 LINE L1 6164 6287 -4 219 341 81 8 chr13 22842404 22842527 -96902371 - L2 LINE L2 -1 3271 3140 249 83 0 0 chr13 22842943 22842979 -96901919 + (CA)n Simple_repeat Simple_repeat 1 36 0 299 264 72 42 chr13 22843081 22843248 -96901650 - MIR3 SINE MIR -16 192 21 377 287 31 47 chr13 22843659 22843788 -96901110 + MIR SINE MIR 8 134 -128 5140 133 9 56 chr13 22843806 22844651 -96900247 - L1PA14 LINE L1 -1 6160 5375 1536 150 87 0 chr13 22844651 22844905 -96899993 - AluSg SINE Alu -34 276 1 5140 133 9 56 chr13 22844905 22845647 -96899251 - L1PA14 LINE L1 -786 5375 4600 2087 157 16 0 chr13 22845647 22846011 -96898887 + L1P LINE L1 3958 4327 -1819 202 299 102 16 chr13 22846012 22846139 -96898759 + MIR SINE MIR 125 262 0 219 266 0 110 chr13 22846347 22846415 -96898483 - L2 LINE L2 -20 3293 3239 2106 93 0 0 chr13 22846415 22846720 -96898178 + AluY SINE Alu 1 305 0 219 266 0 110 chr13 22846720 22846759 -96898139 - L2 LINE L2 -74 3239 3197 376 294 9 0 chr13 22847256 22847365 -96897533 + MIR SINE MIR 116 225 -37 1521 48 0 5 chr13 22848416 22848602 -96896296 + L1PA3 LINE L1 5968 6152 -3 255 61 0 0 chr13 22848646 22848679 -96896219 + (GA)n Simple_repeat Simple_repeat 1 33 0 595 138 0 0 chr13 22848679 22848766 -96896132 + LTR34 LTR ERV1 582 668 -31 442 243 115 40 chr13 22849025 22849173 -96895725 - L2 LINE L2 -1 3312 3154 368 284 12 77 chr13 22849881 22850050 -96894848 - MIR3 SINE MIR 0 208 51 182 278 33 44 chr13 22850065 22850155 -96894743 + L2 LINE L2 3184 3272 0 689 259 96 23 chr13 22850157 22850377 -96894521 - MIR SINE MIR -26 236 1 247 283 30 50 chr13 22852126 22852225 -96892673 - MIR3 SINE MIR -27 181 85 257 214 57 29 chr13 22852843 22852913 -96891985 - LTR33 LTR ERVL -2 519 448 559 262 115 16 chr13 22853023 22853206 -96891692 - LTR33 LTR ERVL -319 202 2 188 280 217 35 chr13 22853448 22853591 -96891307 - L2 LINE L2 -10 3262 3094 684 168 18 0 chr13 22853749 22853862 -96891036 - FLAM_C SINE Alu -18 115 1 774 177 8 0 chr13 22853935 22854059 -96890839 + FLAM_C SINE Alu 2 126 -17 2293 92 0 0 chr13 22854075 22854381 -96890517 + AluSx SINE Alu 1 306 -6 360 229 14 0 chr13 22854448 22854518 -96890380 - L2 LINE L2 -18 3254 3184 2327 97 3 0 chr13 22854567 22854877 -96890021 + AluSp SINE Alu 1 311 -2 261 0 0 0 chr13 22855069 22855098 -96889800 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr13 22857110 22857138 -96887760 + AT_rich Low_complexity Low_complexity 1 28 0 5708 139 34 13 chr13 22857150 22857602 -96887296 - L1MA5A LINE L1 -29 6268 5827 279 0 0 0 chr13 22857602 22857633 -96887265 + (TG)n Simple_repeat Simple_repeat 2 32 0 5708 139 34 13 chr13 22857633 22858214 -96886684 - L1MA5A LINE L1 -470 5827 5209 1321 176 4 4 chr13 22858199 22858460 -96886438 + L1MA5A LINE L1 4963 5223 -923 * 21 36 0 0 chr13 22858649 22858677 -96886221 + AT_rich Low_complexity Low_complexity 1 28 0 737 285 162 27 chr13 22858750 22860165 -96884733 + L1ME1 LINE L1 3953 5572 -592 201 289 0 0 chr13 22860207 22860259 -96884639 - MIR SINE MIR -2 260 209 292 271 67 36 chr13 22860411 22860612 -96884286 + L1ME1 LINE L1 5758 5962 -204 5351 59 6 1 chr13 22860885 22861550 -96883348 + L1PA7 LINE L1 5472 6139 -15 581 264 96 42 chr13 22861792 22861804 -96883094 + L1ME LINE L1 4157 4167 -1979 1528 170 3 23 chr13 22861804 22862110 -96882788 + AluJo SINE Alu 1 300 -12 581 264 96 42 chr13 22862110 22862574 -96882324 + L1ME LINE L1 4167 4659 -1487 207 191 0 0 chr13 22862608 22862655 -96882243 + A-rich Low_complexity Low_complexity 1 47 0 271 350 61 19 chr13 22862870 22863084 -96881814 + L1ME LINE L1 5376 5598 -523 918 206 34 48 chr13 22863726 22864018 -96880880 + pTR5 LTR ERV1 741 1028 -1410 2855 182 118 39 chr13 22864201 22864838 -96880060 + LTR12 LTR ERV1 2 688 0 735 135 92 0 chr13 22864838 22864975 -96879923 + LTR12 LTR ERV1 270 714 0 686 23 11 0 chr13 22866115 22866203 -96878695 + (CA)n Simple_repeat Simple_repeat 2 90 0 2008 188 261 12 chr13 22866299 22866901 -96877997 + Tigger3(Golem) DNA MER2_type 2278 3029 0 1101 204 92 55 chr13 22866916 22867318 -96877580 - MLT2B1 LTR ERVL -40 475 13 274 239 42 14 chr13 22867326 22867397 -96877501 - HERVL-B1 LTR ERVL 0 5654 5582 775 72 0 0 chr13 22867401 22867498 -96877400 + L1PA4 LINE L1 2 98 -6048 * 39032 38 9 1 chr13 22867496 22872986 -96871912 + L1PA4 LINE L1 623 6152 -3 6310 173 31 9 chr13 22873073 22875238 -96869660 - ERVL-B2 LTR ERVL -66 5698 3433 1765 128 15 15 chr13 22875245 22875510 -96869388 - ERVL-B2 LTR ERVL -2909 2855 2591 * 3525 173 5 9 chr13 22875495 22875529 -96869369 - ERVL-B2 LTR ERVL -3432 2332 2299 1461 159 120 19 chr13 22875529 22875837 -96869061 + MER44D DNA MER2_type 1 609 0 3525 173 5 9 chr13 22875837 22876381 -96868517 - ERVL-B2 LTR ERVL -3465 2299 1756 835 211 0 0 chr13 22876412 22876568 -96868330 - FRAM SINE Alu -19 157 2 7769 207 70 10 chr13 22876568 22878218 -96866680 - ERVL-B2 LTR ERVL -4013 1751 2 291 143 0 57 chr13 22878219 22878289 -96866609 - MLT2B2 LTR ERVL 0 554 455 181 156 16 16 chr13 22878291 22878355 -96866543 + (TA)n Simple_repeat Simple_repeat 2 65 0 2103 185 131 19 chr13 22878381 22878809 -96866089 - MLT2B2 LTR ERVL -39 476 1 583 82 27 49 chr13 22880679 22880862 -96864036 + (CA)n Simple_repeat Simple_repeat 1 179 0 553 83 29 51 chr13 22880881 22881238 -96863660 + (CA)n Simple_repeat Simple_repeat 1 348 0 389 141 34 40 chr13 22881304 22881481 -96863417 + (CA)n Simple_repeat Simple_repeat 1 176 0 343 139 26 55 chr13 22881503 22881856 -96863042 + (CA)n Simple_repeat Simple_repeat 1 343 0 273 130 24 49 chr13 22881909 22882032 -96862866 + (CA)n Simple_repeat Simple_repeat 1 120 0 340 190 33 37 chr13 22882058 22882531 -96862367 + (CA)n Simple_repeat Simple_repeat 1 471 0 188 341 57 0 chr13 22883738 22883861 -96861037 + L2 LINE L2 2927 3056 -257 247 295 48 19 chr13 22885477 22885582 -96859316 + MIR SINE MIR 116 223 -39 219 132 0 53 chr13 22889278 22889354 -96855544 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 336 276 45 35 chr13 22889951 22890106 -96854792 + MLT1E3 LTR MaLR 243 406 -218 180 216 0 0 chr13 22890830 22890881 -96854017 + T-rich Low_complexity Low_complexity 1 51 0 186 156 0 0 chr13 22891510 22891542 -96853356 + L2 LINE L2 3241 3272 0 232 272 136 19 chr13 22891729 22891832 -96853066 - L1MC4 LINE L1 -1 8041 7927 396 371 84 16 chr13 22892283 22892652 -96852246 - L1ME LINE L1 -472 5698 5305 388 318 95 56 chr13 22892816 22893044 -96851854 - L1ME LINE L1 -838 5308 5090 2055 110 40 0 chr13 22893044 22893344 -96851554 + AluSx SINE Alu 1 312 0 388 318 95 56 chr13 22893344 22893684 -96851214 - L1ME LINE L1 -1056 5090 4765 3931 179 51 60 chr13 22893684 22894647 -96850251 - LTR13 LTR ERVK 0 954 1 388 318 95 56 chr13 22894647 22895349 -96849549 - L1ME LINE L1 -1381 4765 3987 197 132 26 0 chr13 22897131 22897169 -96847729 + (TA)n Simple_repeat Simple_repeat 1 39 0 1304 96 0 119 chr13 22897188 22897449 -96847449 - AluSc SINE Alu -7 302 73 1464 172 62 0 chr13 22897469 22897725 -96847173 - L1MC3 LINE L1 -830 6955 6684 1330 262 51 0 chr13 22897729 22898141 -96846757 + L1MB8 LINE L1 1046 1478 -4906 677 192 7 34 chr13 22898142 22898288 -96846610 - MER4D LTR ERV1 0 903 762 2931 117 60 7 chr13 22898294 22898748 -96846150 + MER9 LTR ERVK 34 511 0 2320 174 30 111 chr13 22898748 22899449 -96845449 - MER4E LTR ERV1 -135 644 1 1146 261 127 40 chr13 22899456 22900234 -96844664 + L1MB8 LINE L1 1632 2477 -4086 712 182 15 15 chr13 22900248 22900380 -96844518 + FLAM_C SINE Alu 1 132 -1 8034 66 6 5 chr13 22900393 22901399 -96843499 + LTR13 LTR ERVK 1 1007 0 1128 101 6 24 chr13 22901399 22901567 -96843331 + AluSg/x SINE Alu 139 303 -7 10306 219 37 37 chr13 22901568 22901728 -96843170 + L1MB8 LINE L1 2449 2608 -3962 1978 149 0 0 chr13 22901728 22902030 -96842868 + AluSg SINE Alu 1 302 -8 10306 219 37 37 chr13 22902030 22903643 -96841255 + L1MB8 LINE L1 2608 4220 -2350 2185 105 0 0 chr13 22903643 22903937 -96840961 + AluSg SINE Alu 1 294 -16 10306 219 37 37 chr13 22903937 22906135 -96838763 + L1MB8 LINE L1 4220 6570 0 401 253 105 49 chr13 22906276 22906580 -96838318 + L1M4 LINE L1 3673 3993 -2153 445 308 104 51 chr13 22906606 22907057 -96837841 + REP3 LTR ERV 1 475 -87 21 36 0 0 chr13 22907355 22907383 -96837515 + AT_rich Low_complexity Low_complexity 1 28 0 438 244 0 0 chr13 22907895 22907985 -96836913 + LTR33A LTR ERVL 434 523 0 368 255 27 53 chr13 22908322 22908510 -96836388 + L1P5 LINE L1 4886 5068 -1078 2089 129 30 0 chr13 22908664 22908967 -96835931 + AluSx SINE Alu 1 312 0 334 291 83 29 chr13 22909047 22909288 -96835610 + L1P5 LINE L1 5294 5547 -609 1270 214 38 70 chr13 22909377 22909774 -96835124 - MLT1B LTR MaLR 0 390 7 333 106 0 0 chr13 22910665 22910712 -96834186 - MLT1E1 LTR MaLR -423 231 185 1031 242 36 4 chr13 22911673 22911994 -96832904 + MLT1A1 LTR MaLR 13 446 -21 420 200 62 31 chr13 22912138 22912268 -96832630 + MIR SINE MIR 50 183 -79 856 177 29 0 chr13 22913205 22913380 -96831518 + L1MB7 LINE L1 5288 5467 -707 698 155 8 25 chr13 22913397 22913636 -96831262 + GA-rich Low_complexity Low_complexity 1 234 0 438 176 22 33 chr13 22913802 22913893 -96831005 + L1MB7 LINE L1 5484 5573 -607 1026 233 43 30 chr13 22913938 22914239 -96830659 + L1MB7 LINE L1 5819 6123 -61 188 209 0 0 chr13 22914274 22914317 -96830581 - MIR SINE MIR -120 142 100 605 221 16 0 chr13 22919123 22919244 -96825654 - MER58B DNA MER1_type 0 341 219 1556 84 23 28 chr13 22919244 22919458 -96825440 + THE1B LTR MaLR 1 213 -151 1621 199 46 35 chr13 22920728 22921132 -96823766 + L1M2c LINE L1 1563 1974 -4875 1937 164 10 0 chr13 22921132 22921436 -96823462 + AluSx SINE Alu 3 309 -3 1621 199 46 35 chr13 22921436 22921463 -96823435 + L1M2c LINE L1 1974 1999 -4850 3628 176 11 28 chr13 22921478 22921581 -96823317 + L1M2c LINE L1 2230 2333 -4515 1852 166 7 7 chr13 22921581 22921882 -96823016 + AluSx SINE Alu 2 302 -10 3628 176 11 28 chr13 22921882 22922883 -96822015 + L1M2c LINE L1 2333 3319 -3529 1544 107 34 0 chr13 22922890 22923124 -96821774 + L1MA5 LINE L1 6056 6297 -3 1003 252 24 18 chr13 22923192 22923451 -96821447 - MLT1H LTR MaLR -248 301 1 4563 236 38 28 chr13 22923905 22925121 -96819777 + L1PA12 LINE L1 10 2319 -5265 3636 82 21 10 chr13 22925110 22925633 -96819265 + L1PA11 LINE L1 5259 5787 -387 * 21 0 0 0 chr13 22926340 22926361 -96818537 + AT_rich Low_complexity Low_complexity 1 21 0 2639 114 25 0 chr13 22926660 22927056 -96817842 + L1PA11 LINE L1 5769 6174 0 311 246 36 18 chr13 22927129 22927239 -96817659 - L1ME3 LINE L1 -2 6160 6049 * 2954 249 112 24 chr13 22927234 22927877 -96817021 - L1M4 LINE L1 -1130 5016 4431 1425 158 102 39 chr13 22927877 22928162 -96816736 - AluJo SINE Alu -9 303 1 2954 249 112 24 chr13 22928162 22928756 -96816142 - L1M4 LINE L1 -1715 4431 3670 558 43 0 0 chr13 22930858 22930927 -96813971 + (TA)n Simple_repeat Simple_repeat 1 69 0 2332 79 0 4 chr13 22931114 22931447 -96813451 + AluSq SINE Alu 5 336 0 483 288 192 30 chr13 22931451 22931889 -96813009 - L1ME4a LINE L1 -293 5828 5320 233 255 0 0 chr13 22932546 22932597 -96812301 + (TA)n Simple_repeat Simple_repeat 2 52 0 352 280 20 0 chr13 22934438 22934538 -96810360 + GA-rich Low_complexity Low_complexity 1 102 0 5572 152 52 11 chr13 22934672 22934937 -96809961 - L1MA8 LINE L1 0 6291 6039 2213 119 0 3 chr13 22934937 22935239 -96809659 + AluSq SINE Alu 3 303 -10 5572 152 52 11 chr13 22935239 22936428 -96808470 - L1MA8 LINE L1 -252 6039 4774 325 195 26 13 chr13 22936934 22937011 -96807887 + MER116 DNA Mariner 3 80 0 454 287 98 68 chr13 22937297 22937429 -96807469 - L1ME4a LINE L1 -847 5299 5172 1941 119 0 34 chr13 22937429 22937723 -96807175 - AluJb SINE Alu -15 297 14 454 287 98 68 chr13 22937723 22938061 -96806837 - L1ME4a LINE L1 -974 5172 4815 415 245 186 10 chr13 22938062 22938266 -96806632 - L1ME4a LINE L1 -1371 4775 4536 4262 267 110 35 chr13 22938385 22938439 -96806459 - L1ME LINE L1 -399 5763 5714 2063 132 3 0 chr13 22938439 22938735 -96806163 - AluSx SINE Alu -15 297 1 4262 267 110 35 chr13 22938735 22940065 -96804833 - L1ME LINE L1 -448 5714 4485 1844 148 0 30 chr13 22940065 22940369 -96804529 - AluJb SINE Alu -17 295 1 4262 267 110 35 chr13 22940369 22940604 -96804294 - L1ME LINE L1 -1677 4485 4269 333 0 0 0 chr13 22940604 22940641 -96804257 + (TG)n Simple_repeat Simple_repeat 1 37 0 4262 267 110 35 chr13 22940641 22940672 -96804226 - L1ME LINE L1 -1893 4269 4242 1953 143 13 7 chr13 22940672 22940980 -96803918 + AluSx SINE Alu 1 310 -2 4262 267 110 35 chr13 22940980 22942302 -96802596 - L1ME LINE L1 -1920 4242 2565 571 301 42 32 chr13 22942508 22942820 -96802078 - L1ME4a LINE L1 -1995 4151 3837 3236 135 22 15 chr13 22942909 22943221 -96801677 - L1PA16 LINE L1 -21 6145 5826 2396 104 0 0 chr13 22943221 22943528 -96801370 - AluSq SINE Alu -6 307 1 3236 135 22 15 chr13 22943528 22943755 -96801143 - L1PA16 LINE L1 -340 5826 5602 543 108 11 0 chr13 22943748 22943841 -96801057 - L1PA16 LINE L1 -774 5392 5299 * 1851 81 3 88 chr13 22943842 22944138 -96800760 - LTR14B LTR ERVK -321 287 17 340 309 121 18 chr13 22944231 22944396 -96800502 - MER5A DNA MER1_type 0 189 8 217 378 0 12 chr13 22944431 22944513 -96800385 - MER5A DNA MER1_type -31 158 78 2343 180 47 16 chr13 22944656 22945150 -96799748 - LTR22 LTR ERVK 0 509 1 1770 166 0 14 chr13 22945283 22945572 -96799326 + AluJo SINE Alu 1 285 -27 2370 101 0 3 chr13 22945583 22945891 -96799007 + AluSq SINE Alu 1 307 -6 374 287 161 36 chr13 22947087 22947310 -96797588 + MIR SINE MIR 2 252 -10 486 226 211 39 chr13 22947464 22947623 -96797275 - Charlie7 DNA MER1_type -3 2609 2479 2134 128 0 0 chr13 22947623 22947912 -96796986 - AluSc SINE Alu -20 289 1 486 226 211 39 chr13 22947912 22948089 -96796809 - Charlie7 DNA MER1_type -133 2479 2215 21 36 0 0 chr13 22948238 22948266 -96796632 + AT_rich Low_complexity Low_complexity 1 28 0 1857 150 37 0 chr13 22948271 22948565 -96796333 + AluSx SINE Alu 7 311 -1 1774 143 57 4 chr13 22948687 22948967 -96795931 - AluJo SINE Alu -16 296 2 602 141 8 125 chr13 22948990 22949118 -96795780 - FLAM_C SINE Alu -18 125 13 692 218 100 66 chr13 22949175 22949556 -96795342 - L1MC5 LINE L1 -285 7676 7283 2380 68 0 39 chr13 22949679 22949988 -96794910 - AluY SINE Alu -14 297 1 1835 155 4 0 chr13 22950029 22950326 -96794572 + AluJb SINE Alu 5 302 0 399 217 0 0 chr13 22950510 22950616 -96794282 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 652 282 160 29 chr13 22950619 22950931 -96793967 + MER115 DNA AcHobo 54 406 -287 772 202 5 72 chr13 22950948 22951141 -96793757 + MER115 DNA AcHobo 514 693 0 1764 57 17 26 chr13 22951696 22951926 -96792972 + AluY SINE Alu 83 310 -1 820 200 24 29 chr13 22952373 22952543 -96792355 - FRAM SINE Alu -10 166 1 21 0 0 0 chr13 22952936 22952957 -96791941 + AT_rich Low_complexity Low_complexity 1 21 0 496 267 64 13 chr13 22953247 22953483 -96791415 + L2 LINE L2 2033 2280 -1034 1712 147 34 4 chr13 22953513 22953778 -96791120 - AluJb SINE Alu -39 273 1 1197 274 43 29 chr13 22953778 22954486 -96790412 - L1ME LINE L1 -4823 1257 536 776 316 41 64 chr13 22954630 22955161 -96789737 - L1ME LINE L1 -5539 531 13 21 0 0 0 chr13 22955350 22955371 -96789527 + AT_rich Low_complexity Low_complexity 1 21 0 1852 171 0 3 chr13 22955376 22955675 -96789223 + AluJb SINE Alu 1 298 -14 437 219 57 19 chr13 22955805 22955910 -96788988 + MLT1J2 LTR MaLR 3 111 -339 440 292 105 28 chr13 22955972 22956170 -96788728 + MLT1J2 LTR MaLR 238 448 -2 670 209 95 0 chr13 22956549 22956697 -96788201 + L1PA16 LINE L1 5999 6160 -6 1078 61 30 0 chr13 22956901 22957032 -96787866 - AluYb8 SINE Alu -183 135 1 1156 172 23 0 chr13 22957076 22957297 -96787601 - L1MA4 LINE L1 0 6300 6075 970 211 22 64 chr13 22957360 22957685 -96787213 - L1MB7 LINE L1 0 6321 6032 2192 91 66 90 chr13 22958056 22958462 -96786436 + LTR14B LTR ERVK 1 608 0 417 255 0 0 chr13 22958462 22958560 -96786338 - MIR SINE MIR -106 156 59 496 239 92 0 chr13 22958653 22958783 -96786115 - MIR SINE MIR -65 197 56 1567 191 26 26 chr13 22960641 22960950 -96783948 + AluJo SINE Alu 2 310 -2 184 309 0 15 chr13 22960965 22961033 -96783865 - MIR3 SINE MIR -32 176 110 322 182 76 0 chr13 22961106 22961172 -96783726 - MIR SINE MIR -60 148 78 1816 171 0 17 chr13 22961320 22961613 -96783285 - AluJo SINE Alu -24 288 1 22 0 0 0 chr13 22962032 22962054 -96782844 + AT_rich Low_complexity Low_complexity 1 22 0 361 262 72 42 chr13 22962163 22962703 -96782195 + L1MC/D LINE L1 4934 5483 -750 940 145 14 0 chr13 22962725 22962870 -96782028 + FAM SINE Alu 28 174 -11 1078 89 0 7 chr13 22962928 22963063 -96781835 - AluSq/x SINE Alu -179 134 1 920 136 80 2 chr13 22963174 22963444 -96781454 - MER1B DNA MER1_type -2 337 1 1209 111 0 0 chr13 22964186 22964348 -96780550 + FRAM SINE Alu 1 162 -14 538 186 73 8 chr13 22964550 22964674 -96780224 - L1MB4 LINE L1 -1 6179 6048 2120 113 26 26 chr13 22965131 22965441 -96779457 + AluSg SINE Alu 1 310 0 286 266 165 13 chr13 22965601 22965759 -96779139 - MIR SINE MIR -79 183 2 250 231 37 74 chr13 22965775 22965883 -96779015 - L1MB4 LINE L1 -2330 5478 5375 1650 162 7 4 chr13 22965906 22966177 -96778721 - AluJb SINE Alu -40 272 1 825 118 8 8 chr13 22966185 22966304 -96778594 - FLAM_C SINE Alu -19 124 6 238 274 94 9 chr13 22968465 22968571 -96776327 - L2 LINE L2 -1 3271 3157 880 234 84 5 chr13 22968813 22969027 -96775871 - L1ME1 LINE L1 -8 6158 5928 23 33 0 0 chr13 22969336 22969366 -96775532 + AT_rich Low_complexity Low_complexity 1 30 0 1250 161 17 132 chr13 22969675 22970086 -96774812 + LTR49 LTR ERV1 1 485 -254 338 174 181 87 chr13 22970109 22970247 -96774651 + LTR48 LTR ERV1 607 757 -30 2242 228 74 54 chr13 22970324 22970970 -96773928 + MER21B LTR ERV1 98 756 -107 1435 91 106 0 chr13 22971401 22971609 -96773289 + MER30 DNA MER1_type 1 230 0 2191 110 0 0 chr13 22972355 22972666 -96772232 - AluSx SINE Alu 0 311 1 927 157 7 0 chr13 22972774 22972921 -96771977 + L1MB4 LINE L1 5333 5480 -694 1387 172 38 48 chr13 22972930 22973221 -96771677 + AluJb SINE Alu 1 288 -24 920 207 0 0 chr13 22973274 22973438 -96771460 + FRAM SINE Alu 8 171 -5 3736 169 35 1 chr13 22973456 22974112 -96770786 + L1MB4 LINE L1 5470 6152 -28 2536 69 0 0 chr13 22974112 22974415 -96770483 + AluY SINE Alu 1 303 -8 3736 169 35 1 chr13 22974415 22974446 -96770452 + L1MB4 LINE L1 6152 6180 0 802 233 0 0 chr13 22975882 22976045 -96768853 - FRAM SINE Alu -3 163 1 667 192 98 39 chr13 22977099 22977302 -96767596 - MIR SINE MIR -43 219 5 2294 115 0 3 chr13 22977935 22978240 -96766658 - AluSx SINE Alu -7 305 2 195 129 0 0 chr13 22978241 22978272 -96766626 + (T)n Simple_repeat Simple_repeat 1 31 0 233 236 115 54 chr13 22978312 22978460 -96766438 + L1ME4a LINE L1 5964 6120 -1 2057 96 67 3 chr13 22978838 22979120 -96765778 + AluSx SINE Alu 1 300 -12 718 281 19 27 chr13 22979653 22979916 -96764982 - MIR SINE MIR 0 262 2 234 0 0 0 chr13 22980486 22980512 -96764386 + (TA)n Simple_repeat Simple_repeat 2 27 0 1963 163 0 16 chr13 22980615 22980928 -96763970 - AluJo SINE Alu -4 308 1 1963 103 59 7 chr13 22981638 22981953 -96762945 + AluSq SINE Alu 1 313 0 512 221 27 40 chr13 22982270 22982419 -96762479 + MLT1H LTR MaLR 22 168 -381 2272 103 3 0 chr13 22982506 22982806 -96762092 + AluSx SINE Alu 12 312 0 252 184 447 0 chr13 22982857 22982960 -96761938 + HAL1 LINE L1 1290 1438 -1069 771 246 111 47 chr13 22982980 22982993 -96761905 + HAL1 LINE L1 2075 2086 -421 1608 184 16 44 chr13 22982993 22983115 -96761783 + AluJb SINE Alu 1 125 -187 2585 63 0 0 chr13 22983115 22983414 -96761484 - AluY SINE Alu -12 299 1 1608 184 16 44 chr13 22983414 22983611 -96761287 + AluJb SINE Alu 125 311 -1 771 246 111 47 chr13 22983611 22984004 -96760894 + HAL1 LINE L1 2086 2507 0 294 29 0 0 chr13 22984538 22984573 -96760325 + (CA)n Simple_repeat Simple_repeat 2 36 0 388 286 37 37 chr13 22984576 22984737 -96760161 + L1ME4a LINE L1 5941 6101 -20 1402 202 80 3 chr13 22985685 22985972 -96758926 - AluJb SINE Alu -3 309 1 339 252 310 7 chr13 22986368 22986523 -96758375 + L1MCc LINE L1 13 214 -6209 2399 255 108 65 chr13 22986536 22987714 -96757184 + L1MCc LINE L1 303 1531 -4892 2088 245 80 50 chr13 22987730 22988521 -96756377 + L1MCc LINE L1 1751 2581 -4541 10122 119 41 0 chr13 22988521 22990790 -96754108 + L1PA10 LINE L1 3859 6167 -1 2088 245 80 50 chr13 22990790 22991007 -96753891 + L1MCc LINE L1 2581 2790 -4332 411 206 57 4 chr13 22991007 22991153 -96753745 + MER3 DNA MER1_type 1 203 -6 1963 151 14 0 chr13 22991194 22991486 -96753412 - AluJb SINE Alu -16 296 1 2156 120 10 16 chr13 22991518 22991826 -96753072 + AluSx SINE Alu 1 306 -6 709 229 47 17 chr13 22991827 22992063 -96752835 + L1MCc LINE L1 2825 3067 -4055 894 206 0 0 chr13 22992445 22992605 -96752293 - FRAM SINE Alu -5 161 2 2355 106 3 0 chr13 22993406 22993709 -96751189 - AluSq SINE Alu -9 304 1 601 177 77 23 chr13 22994484 22994614 -96750284 - FLAM_C SINE Alu -5 138 2 459 273 62 24 chr13 22996837 22997046 -96747852 - MIR SINE MIR -38 224 8 266 210 0 32 chr13 22997049 22997111 -96747787 + tRNA-Gln-CAG tRNA tRNA 5 64 -11 249 322 74 0 chr13 22997128 22997249 -96747649 + MIR SINE MIR 110 239 -23 186 231 93 46 chr13 22997642 22997750 -96747148 + L2 LINE L2 1429 1541 -1773 1549 132 30 117 chr13 22997897 22998230 -96746668 - AluJb SINE Alu -8 304 1 196 241 0 0 chr13 22998321 22998375 -96746523 + MIR SINE MIR 204 257 -5 823 278 304 5 chr13 22998528 22999331 -96745567 + L2 LINE L2 1587 2629 -685 746 264 104 13 chr13 22999403 22999721 -96745177 + LTR16A LTR ERVL 104 450 0 1093 271 59 23 chr13 22999745 23000366 -96744532 + L2 LINE L2 2668 3308 -5 1798 176 0 7 chr13 23000797 23001092 -96743806 - AluJb SINE Alu -19 293 1 762 159 0 23 chr13 23001138 23001270 -96743628 - FLAM_A SINE Alu 0 142 14 194 313 150 7 chr13 23001877 23002024 -96742874 - MIR SINE MIR -74 188 21 1500 172 84 4 chr13 23002203 23002476 -96742422 + AluJo SINE Alu 1 295 -17 1933 156 10 3 chr13 23003444 23003739 -96741159 - AluJo SINE Alu -15 297 1 2413 82 117 107 chr13 23004434 23005185 -96739713 + pTR5 LTR ERV1 13 2435 -3 8539 112 18 4 chr13 23005185 23006415 -96738483 + Tigger1 DNA MER2_type 232 1478 -940 2440 94 3 0 chr13 23006416 23006724 -96738174 + AluSq SINE Alu 1 309 -4 595 194 56 76 chr13 23006742 23006886 -96738012 + FRAM SINE Alu 20 160 -16 6227 119 18 8 chr13 23006886 23007824 -96737074 + Tigger1 DNA MER2_type 1471 2418 0 384 315 40 0 chr13 23007864 23008013 -96736885 - L1ME3A LINE L1 -310 5860 5706 1486 201 3 43 chr13 23008014 23008210 -96736688 - AluJo SINE Alu -2 310 131 2811 20 0 0 chr13 23008210 23008515 -96736383 + AluYb8 SINE Alu 1 305 -13 1486 201 3 43 chr13 23008515 23008641 -96736257 - AluJo SINE Alu -181 131 1 2106 125 0 3 chr13 23008643 23008932 -96735966 - AluSx SINE Alu -24 288 1 336 245 8 12 chr13 23008940 23009058 -96735840 - L1ME3A LINE L1 -803 5343 5245 293 280 102 25 chr13 23009058 23009176 -96735722 + MIR SINE MIR 48 174 -88 1695 155 4 25 chr13 23009199 23009477 -96735421 - AluJo SINE Alu -39 273 2 244 257 64 36 chr13 23010036 23010176 -96734722 - L1ME3A LINE L1 -1081 5065 4922 306 258 120 60 chr13 23010281 23010448 -96734450 - L1ME3A LINE L1 -1421 4725 4549 22 56 0 19 chr13 23010839 23010871 -96734027 + AT_rich Low_complexity Low_complexity 1 33 -20 791 186 0 0 chr13 23010871 23010989 -96733909 - FLAM_C SINE Alu -15 118 1 22 56 0 19 chr13 23010989 23011010 -96733888 + AT_rich Low_complexity Low_complexity 33 53 0 307 297 38 38 chr13 23011370 23011609 -96733289 + L1ME4a LINE L1 5714 5952 -169 2031 115 0 33 chr13 23011675 23011979 -96732919 + AluSx SINE Alu 1 294 -18 2288 92 7 0 chr13 23011985 23012280 -96732618 + AluSc SINE Alu 1 297 -12 221 186 0 0 chr13 23012326 23012369 -96732529 - L2 LINE L2 -248 3065 3023 470 279 114 0 chr13 23012682 23012822 -96732076 - MER63 DNA MER1_type -276 786 5 447 148 70 120 chr13 23012865 23013007 -96731891 + L1ME4a LINE L1 5985 6119 -2 2140 122 0 0 chr13 23013372 23013659 -96731239 - AluSx SINE Alu -25 287 1 3220 177 71 38 chr13 23013665 23014333 -96730565 - L1MB5 LINE L1 0 6174 5480 2378 78 3 3 chr13 23014333 23014641 -96730257 + AluY SINE Alu 1 308 -3 3220 177 71 38 chr13 23014641 23014680 -96730218 - L1MB5 LINE L1 -694 5480 5444 447 216 85 65 chr13 23014830 23014983 -96729915 + MER63A DNA MER1_type 53 208 -2 21 0 0 0 chr13 23015416 23015437 -96729461 + AT_rich Low_complexity Low_complexity 1 21 0 737 185 23 0 chr13 23015946 23016076 -96728822 - FRAM SINE Alu -8 168 36 2203 112 10 3 chr13 23016128 23016424 -96728474 - AluSq SINE Alu -15 298 1 427 300 206 26 chr13 23016730 23017157 -96727741 + MLT1L LTR MaLR 106 609 -6 1679 174 14 3 chr13 23019204 23019498 -96725400 - AluJo SINE Alu -15 297 1 2011 135 22 19 chr13 23019865 23020176 -96724722 - AluSx SINE Alu 0 312 1 2349 99 0 0 chr13 23021748 23022050 -96722848 + AluSg SINE Alu 1 302 -8 225 268 98 62 chr13 23022334 23022446 -96722452 + L2 LINE L2 3150 3265 -7 1883 176 32 26 chr13 23022638 23023018 -96721880 + MLT1B LTR MaLR 1 382 -8 449 168 74 60 chr13 23023306 23023455 -96721443 - L1ME4a LINE L1 -9 6112 5962 650 170 10 0 chr13 23023612 23023712 -96721186 - FLAM_A SINE Alu -22 120 20 845 132 47 23 chr13 23024024 23024153 -96720745 + AluJo SINE Alu 3 134 -178 197 278 56 0 chr13 23024736 23024790 -96720108 + MIR3 SINE MIR 100 156 -52 21 36 0 0 chr13 23025044 23025072 -96719826 + AT_rich Low_complexity Low_complexity 1 28 0 341 294 109 0 chr13 23027070 23027189 -96717709 - L1ME LINE L1 -379 5742 5611 678 183 104 0 chr13 23027220 23027335 -96717563 - FLAM_C SINE Alu -13 130 4 29 0 0 0 chr13 23027336 23027365 -96717533 + AT_rich Low_complexity Low_complexity 1 29 0 276 266 0 0 chr13 23028058 23028122 -96716776 + MIR3 SINE MIR 138 201 -7 1980 106 84 3 chr13 23029310 23029594 -96715304 - AluSg SINE Alu -3 307 1 1965 141 7 3 chr13 23029709 23029999 -96714899 - AluSx SINE Alu -20 292 2 636 133 95 0 chr13 23030009 23030114 -96714784 - AluSg/x SINE Alu -12 297 183 2544 115 4 117 chr13 23030119 23030624 -96714274 - LTR46 LTR ERV1 -11 449 2 969 87 0 8 chr13 23030625 23030752 -96714146 - AluSg/x SINE Alu -103 207 82 3845 126 153 93 chr13 23031048 23032346 -96712552 - pTR5 LTR ERV1 0 2438 738 786 235 161 29 chr13 23033372 23033528 -96711370 - L1ME4a LINE L1 -16 6105 5971 2091 120 7 0 chr13 23033528 23033819 -96711079 - AluSq SINE Alu -20 293 1 786 235 161 29 chr13 23033819 23034108 -96710790 - L1ME4a LINE L1 -150 5971 5601 416 190 21 92 chr13 23034158 23034230 -96710668 + L1MB8 LINE L1 6044 6103 -75 1928 166 10 0 chr13 23034230 23034532 -96710366 + AluJb SINE Alu 1 305 -7 416 190 21 92 chr13 23034532 23034601 -96710297 + L1MB8 LINE L1 6103 6175 -3 480 239 89 111 chr13 23034661 23034705 -96710193 - L1ME4a LINE L1 -81 6040 5997 2232 100 10 3 chr13 23034705 23035005 -96709893 - AluSx SINE Alu -10 302 1 480 239 89 111 chr13 23035005 23035278 -96709620 - L1ME4a LINE L1 -124 5997 5734 2721 20 0 0 chr13 23035278 23035577 -96709321 + AluYa5 SINE Alu 1 299 -12 480 239 89 111 chr13 23035577 23035719 -96709179 - L1ME4a LINE L1 -387 5734 5590 344 67 0 100 chr13 23035733 23035793 -96709105 - L1MB3 LINE L1 -52 6131 6078 1553 156 45 24 chr13 23035804 23036093 -96708805 - AluJb SINE Alu -17 295 1 193 319 83 28 chr13 23038186 23038330 -96706568 - L2 LINE L2 -1016 2298 2147 987 211 12 40 chr13 23038455 23038777 -96706121 + L1M4 LINE L1 972 1284 -5258 * 5170 145 8 4 chr13 23038751 23039570 -96705328 + L1PA16 LINE L1 5833 6655 -9 2246 188 39 79 chr13 23039580 23039687 -96705211 + L1M4 LINE L1 1255 1365 -5281 1897 157 26 7 chr13 23039687 23039993 -96704905 + AluJo SINE Alu 1 312 0 2246 188 39 79 chr13 23039993 23040570 -96704328 + L1M4 LINE L1 1365 1912 -4734 1879 164 7 0 chr13 23040572 23040859 -96704039 + AluJb SINE Alu 1 289 -23 893 168 62 19 chr13 23041421 23041582 -96703316 - AluJo/FRAM SINE Alu -11 301 134 432 234 52 0 chr13 23041585 23041662 -96703236 - AluJ/FLAM SINE Alu -230 82 2 1740 132 4 0 chr13 23041728 23041970 -96702928 + AluSx SINE Alu 1 243 -69 1980 121 7 4 chr13 23042279 23042601 -96702297 + AluSx SINE Alu 1 323 0 714 198 8 0 chr13 23043145 23043266 -96701632 - FLAM_A SINE Alu -7 126 5 354 23 0 0 chr13 23043291 23043334 -96701564 + (TG)n Simple_repeat Simple_repeat 2 44 0 1927 152 3 7 chr13 23043344 23043647 -96701251 - AluSx SINE Alu -10 302 1 599 162 0 81 chr13 23043753 23043889 -96701009 - L1PA10 LINE L1 0 6168 6044 1526 163 22 18 chr13 23043892 23044169 -96700729 - LTR14B LTR ERVK -23 585 308 289 262 50 41 chr13 23047310 23047564 -96697334 + ALR/Alpha Satellite centromeric 1 256 0 2546 68 0 0 chr13 23047765 23048075 -96696823 + AluY SINE Alu 1 310 -1 28 0 0 47 chr13 23050055 23050082 -96694816 + AT_rich Low_complexity Low_complexity 1 27 -14 2242 100 0 3 chr13 23050082 23050371 -96694527 - AluY SINE Alu -23 288 1 28 0 0 47 chr13 23050371 23050386 -96694512 + AT_rich Low_complexity Low_complexity 27 41 0 2697 17 0 0 chr13 23053193 23053486 -96691412 - AluYa5 SINE Alu -18 293 1 3105 180 50 41 chr13 23053488 23054194 -96690704 + LTR8A LTR ERV1 16 727 0 486 308 35 0 chr13 23055060 23055232 -96689666 + L1PA16 LINE L1 2467 2644 -3502 * 941 165 88 0 chr13 23055231 23055413 -96689485 - L1PA15-16 LINE L1 -3932 2917 2720 9024 200 24 7 chr13 23055414 23058863 -96686035 + L1PA16 LINE L1 2658 6165 -1 258 32 0 0 chr13 23058900 23058931 -96685967 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 1575 259 25 0 chr13 23058953 23059359 -96685539 - L1M4 LINE L1 -940 5206 4791 257 132 0 38 chr13 23059943 23059996 -96684902 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 360 0 0 0 chr13 23060059 23060099 -96684799 + (TG)n Simple_repeat Simple_repeat 1 40 0 408 248 31 47 chr13 23060544 23060673 -96684225 + MLT1D LTR MaLR 343 469 -36 21 0 0 0 chr13 23061088 23061109 -96683789 + AT_rich Low_complexity Low_complexity 1 21 0 258 227 108 70 chr13 23061223 23061509 -96683389 - L1M4 LINE L1 -2866 3280 2984 1372 209 100 6 chr13 23061565 23061885 -96683013 + MLT1D LTR MaLR 156 505 0 218 207 244 0 chr13 23062576 23062658 -96682240 - MIR SINE MIR -71 137 36 396 0 0 0 chr13 23063602 23063646 -96681252 + (TG)n Simple_repeat Simple_repeat 2 45 0 253 290 139 23 chr13 23064278 23064426 -96680472 + MIR SINE MIR 5 142 -66 188 175 25 0 chr13 23065271 23065311 -96679587 + MIR SINE MIR 105 145 -63 1066 96 12 0 chr13 23067664 23067830 -96677068 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 3481 66 26 18 chr13 23067830 23068286 -96676612 - L1PA7 LINE L1 -13 6141 5682 227 351 115 20 chr13 23068995 23069343 -96675555 + L1ME LINE L1 5504 5884 -237 26 0 0 0 chr13 23069747 23069773 -96675125 + AT_rich Low_complexity Low_complexity 1 26 0 603 234 28 0 chr13 23070151 23070296 -96674602 - L1PA16 LINE L1 0 6166 6018 4133 154 16 25 chr13 23070528 23070720 -96674178 - L1MA3 LINE L1 0 6305 6113 189 0 0 0 chr13 23070720 23070741 -96674157 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2326 59 0 3 chr13 23070741 23071027 -96673871 - AluY SINE Alu -26 285 1 4133 154 16 25 chr13 23071027 23071597 -96673301 - L1MA3 LINE L1 -190 6115 5549 198 0 0 0 chr13 23072533 23072555 -96672343 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 767 188 0 0 chr13 23073319 23073436 -96671462 + FLAM_A SINE Alu 1 117 -16 43801 47 7 2 chr13 23073437 23079032 -96665866 - L1PA4 LINE L1 0 6155 590 180 0 0 0 chr13 23079032 23079052 -96665846 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 43801 47 7 2 chr13 23079052 23079571 -96665327 - L1PA4 LINE L1 -5565 590 8 8956 51 5 0 chr13 23079571 23080573 -96664325 - LTR13 LTR ERVK 0 1007 1 382 348 18 0 chr13 23082207 23082319 -96662579 - L2 LINE L2 -259 3054 2941 195 167 48 24 chr13 23084092 23084134 -96660764 + MER5A DNA MER1_type 43 85 -104 * 361 211 156 0 chr13 23084118 23084208 -96660690 - MER5A DNA MER1_type -77 112 9 5186 109 142 131 chr13 23084739 23086285 -96658613 - pTR5 LTR ERV1 0 2438 741 297 0 0 0 chr13 23087949 23087982 -96656916 + (TG)n Simple_repeat Simple_repeat 1 33 0 479 188 21 0 chr13 23088481 23088577 -96656321 - Charlie1 DNA MER1_type -45 2716 2619 986 201 25 0 chr13 23090043 23090247 -96654651 + AluJb SINE Alu 97 305 -7 1125 94 0 0 chr13 23090584 23090722 -96654176 + AluSq/x SINE Alu 1 138 -175 266 187 0 10 chr13 23090750 23090809 -96654089 - Alu SINE Alu -13 289 248 1620 184 24 3 chr13 23092273 23092567 -96652331 - AluJb SINE Alu -12 300 1 23 0 0 0 chr13 23093004 23093027 -96651871 + AT_rich Low_complexity Low_complexity 1 23 0 2075 65 11 8 chr13 23096131 23096391 -96648507 - AluSg1 SINE Alu -14 295 35 22 0 0 0 chr13 23096401 23096423 -96648475 + AT_rich Low_complexity Low_complexity 1 22 0 1094 88 0 0 chr13 23096423 23096570 -96648328 - AluY SINE Alu -8 303 157 588 306 95 6 chr13 23096607 23096966 -96647932 + L1M4 LINE L1 4549 4939 -1207 453 221 0 23 chr13 23096966 23097052 -96647846 + MER21B LTR ERV1 1 84 -779 207 0 0 0 chr13 23097244 23097267 -96647631 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2054 111 0 10 chr13 23097267 23097556 -96647342 - AluSx SINE Alu -26 286 1 948 185 83 0 chr13 23097784 23097989 -96646909 - MER99 DNA DNA -271 557 336 2159 103 0 30 chr13 23097990 23098291 -96646607 - AluSq SINE Alu -21 292 1 1116 130 36 36 chr13 23098606 23098798 -96646100 - AluJb SINE Alu -120 192 1 401 185 193 8 chr13 23098798 23098917 -96645981 - L1MB8 LINE L1 -269 5909 5769 5353 118 48 62 chr13 23098928 23099415 -96645483 - L1MA4A LINE L1 -1 6302 5810 180 0 0 0 chr13 23099415 23099435 -96645463 + (TA)n Simple_repeat Simple_repeat 2 21 0 5353 118 48 62 chr13 23099435 23099485 -96645413 - L1MA4A LINE L1 -493 5810 5761 2247 100 0 31 chr13 23099485 23099804 -96645094 - AluSg1 SINE Alu 0 309 1 5353 118 48 62 chr13 23099804 23100256 -96644642 - L1MA4A LINE L1 -542 5761 5304 230 56 28 0 chr13 23100256 23100292 -96644606 + (TATG)n Simple_repeat Simple_repeat 4 40 0 2043 119 11 3 chr13 23100292 23100577 -96644321 - AluSq SINE Alu -26 287 1 5387 146 36 4 chr13 23100577 23101668 -96643230 - L1 LINE L1 -3764 3084 1956 2041 151 3 0 chr13 23101668 23101972 -96642926 - AluSx SINE Alu -7 305 1 5387 146 36 4 chr13 23101972 23101997 -96642901 - L1 LINE L1 -4892 1956 1933 5902 107 20 31 chr13 23102241 23103157 -96641741 - L1PA15 LINE L1 -6 6159 5254 1382 115 0 21 chr13 23103169 23103361 -96641537 - AluSg SINE Alu -94 216 29 10271 150 22 17 chr13 23103361 23103836 -96641062 - L1PA15-16 LINE L1 -3489 3360 2889 561 30 0 0 chr13 23103836 23103903 -96640995 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1867 157 4 0 chr13 23103903 23104177 -96640721 - AluSc SINE Alu -34 275 1 10271 150 22 17 chr13 23104177 23105745 -96639153 - L1PA15-16 LINE L1 -3959 2890 1305 2519 157 15 0 chr13 23105751 23106153 -96638745 - L1PA15-16 LINE L1 -6437 412 5 238 291 118 52 chr13 23106151 23106481 -96638417 - L1M4 LINE L1 -2316 3830 3479 * 654 156 0 0 chr13 23106492 23106588 -96638310 + AluSg/x SINE Alu 201 296 -13 622 194 119 12 chr13 23106935 23107095 -96637803 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 23107620 23107743 -96637155 - MER112 DNA MER1_type 0 260 139 545 246 24 53 chr13 23107827 23108039 -96636859 + MIR3 SINE MIR 13 208 0 1969 125 0 11 chr13 23108098 23108407 -96636491 + AluSx SINE Alu 1 292 -20 369 0 0 0 chr13 23109031 23109072 -96635826 + (TG)n Simple_repeat Simple_repeat 2 42 0 233 282 103 0 chr13 23109147 23109225 -96635673 - MIR SINE MIR -29 233 148 740 206 52 134 chr13 23109255 23109809 -96635089 - L1MC5 LINE L1 -48 7913 7405 429 225 117 0 chr13 23109809 23109920 -96634978 - MIR SINE MIR -42 220 97 216 0 0 0 chr13 23110209 23110233 -96634665 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr13 23111277 23111302 -96633596 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1919 123 0 0 chr13 23111305 23111582 -96633316 - AluSx SINE Alu -25 287 11 204 365 73 7 chr13 23113333 23113470 -96631428 + L3b LINE CR1 1116 1261 -322 1985 134 26 10 chr13 23113671 23113978 -96630920 - AluSx SINE Alu 0 312 1 636 310 16 5 chr13 23114723 23114910 -96629988 - MER5A DNA MER1_type 0 189 1 276 252 153 9 chr13 23115670 23115781 -96629117 + MIR SINE MIR 81 207 -55 671 163 16 16 chr13 23116102 23116225 -96628673 - AluJ SINE Alu 0 312 190 720 180 0 0 chr13 23116229 23116351 -96628547 - AluJ SINE Alu -179 133 12 2248 93 3 19 chr13 23116384 23116605 -96628293 - AluSp SINE Alu -5 308 92 5384 127 52 19 chr13 23116605 23117543 -96627355 + LTR5 LTR ERVK 1 969 0 2248 93 3 19 chr13 23117543 23117634 -96627264 - AluSp SINE Alu -221 92 1 2216 107 0 0 chr13 23118418 23118717 -96626181 + AluSc SINE Alu 1 299 -10 1478 190 17 3 chr13 23118769 23119058 -96625840 + AluSx SINE Alu 1 293 -19 353 45 0 0 chr13 23119075 23119119 -96625779 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 231 39 13 chr13 23119609 23119687 -96625211 + A-rich Low_complexity Low_complexity 4 83 0 902 107 0 0 chr13 23119757 23119878 -96625020 - FRAM SINE Alu -28 148 28 3141 181 51 7 chr13 23119878 23120470 -96624428 + MER54A LTR ERVL 284 901 0 854 58 117 0 chr13 23121927 23122047 -96622851 - MER85 DNA T2_type -2 137 4 208 206 32 0 chr13 23122623 23122686 -96622212 + (TA)n Simple_repeat Simple_repeat 1 65 0 1585 193 3 10 chr13 23123415 23123726 -96621172 - AluJb SINE Alu -3 309 1 13965 230 40 30 chr13 23124876 23125911 -96618987 - L1PA16 LINE L1 -9 7595 6572 2333 68 3 0 chr13 23125911 23126207 -96618691 + AluY SINE Alu 3 299 -12 13965 230 40 30 chr13 23126207 23127688 -96617210 - L1PA16 LINE L1 -1032 6572 5107 2113 105 0 20 chr13 23127688 23127994 -96616904 - AluY SINE Alu -11 300 1 13965 230 40 30 chr13 23127994 23129226 -96615672 - L1PA16 LINE L1 -2497 5107 3889 2123 97 0 3 chr13 23129226 23129514 -96615384 + AluY SINE Alu 3 289 -22 13965 230 40 30 chr13 23129514 23132690 -96612208 - L1PA16 LINE L1 -3715 3889 8 2130 94 0 16 chr13 23132866 23133174 -96611724 + AluY SINE Alu 3 305 -6 682 137 0 10 chr13 23133361 23133463 -96611435 - AluS SINE Alu -211 102 2 2323 94 0 0 chr13 23133623 23133931 -96610967 - AluSg SINE Alu -2 308 1 378 221 0 0 chr13 23136458 23136553 -96608345 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 518 314 43 84 chr13 23136566 23136936 -96607962 + L2 LINE L2 2917 3271 -1 180 0 0 0 chr13 23140713 23140733 -96604165 + (A)n Simple_repeat Simple_repeat 1 20 0 195 180 213 0 chr13 23141509 23141570 -96603328 - MER5A DNA MER1_type -106 83 10 256 324 48 0 chr13 23141689 23141794 -96603104 - L2 LINE L2 -941 2373 2264 2066 110 0 0 chr13 23141986 23142276 -96602622 + AluSx SINE Alu 21 310 -2 295 311 57 0 chr13 23143523 23143648 -96601250 + MIR SINE MIR 20 150 -63 206 116 47 23 chr13 23144404 23144425 -96600473 + (TTCTG)n Simple_repeat Simple_repeat 2 21 -24 1416 172 15 78 chr13 23144425 23144757 -96600141 - AluJo SINE Alu -1 311 1 206 116 47 23 chr13 23144757 23144778 -96600120 + (TTCTG)n Simple_repeat Simple_repeat 21 45 0 1387 96 0 5 chr13 23145065 23145253 -96599645 - AluY SINE Alu -124 187 1 2239 148 5 8 chr13 23145253 23145631 -96599267 - L1MA4 LINE L1 -246 6054 5678 620 184 15 22 chr13 23145684 23145820 -96599078 + Ricksha DNA DNA 1 135 -1911 2207 177 33 5 chr13 23145872 23146239 -96598659 + Ricksha DNA DNA 307 683 -1363 259 258 103 21 chr13 23146166 23146263 -96598635 + MLT2D LTR ERVL 321 425 -128 * 2096 138 41 141 chr13 23146262 23146524 -96598374 + Ricksha DNA DNA 2641 2928 -323 2032 113 10 3 chr13 23146524 23146825 -96598073 - AluSq SINE Alu -10 303 1 2096 138 41 141 chr13 23146825 23146908 -96597990 + Ricksha DNA DNA 2928 3018 -233 2315 66 0 3 chr13 23146908 23147210 -96597688 - AluY SINE Alu -10 301 1 2096 138 41 141 chr13 23147210 23147401 -96597497 + Ricksha DNA DNA 3018 3124 -127 4153 128 105 54 chr13 23147431 23148213 -96596685 - LTR12 LTR ERV1 0 826 5 1609 208 16 43 chr13 23148246 23148684 -96596214 + pTR5 LTR ERV1 802 1227 -1211 4797 111 25 98 chr13 23148712 23149599 -96595299 + LTR12 LTR ERV1 5 826 0 384 220 189 8 chr13 23150267 23150399 -96594499 + L2 LINE L2 3115 3270 -43 1453 148 38 6 chr13 23150404 23150840 -96594058 + LTR54 LTR ERV1 1 510 0 243 173 0 0 chr13 23150871 23150923 -96593975 + GA-rich Low_complexity Low_complexity 2 53 0 407 320 47 6 chr13 23151027 23151198 -96593700 + MIR SINE MIR 16 193 -63 360 353 59 13 chr13 23151838 23152076 -96592822 + MIR SINE MIR 6 254 -8 476 251 134 27 chr13 23153179 23153402 -96591496 + MLT1J1 LTR MaLR 189 435 -11 1338 188 112 65 chr13 23153528 23153958 -96590940 + LTR7 LTR ERV1 1 450 0 2252 99 0 3 chr13 23154083 23154397 -96590501 - AluSq SINE Alu 0 313 1 293 283 41 69 chr13 23155203 23155348 -96589550 - MIR3 SINE MIR -28 180 40 237 266 31 16 chr13 23155453 23155517 -96589381 + MIR SINE MIR 89 153 -109 3937 113 4 11 chr13 23156151 23156478 -96588420 + MER41A LTR ERV1 1 324 -230 2182 107 0 0 chr13 23156478 23156776 -96588122 + AluSg SINE Alu 1 298 -12 3937 113 4 11 chr13 23156776 23157006 -96587892 + MER41A LTR ERV1 324 554 0 548 254 55 55 chr13 23157085 23157286 -96587612 + MIR SINE MIR 48 248 -14 297 252 179 0 chr13 23157449 23157572 -96587326 - MIR SINE MIR -71 191 47 685 272 44 44 chr13 23157750 23158000 -96586898 - MIR SINE MIR -12 250 1 420 227 144 57 chr13 23158238 23158432 -96586466 + L1MEd LINE L1 3 213 -5906 243 265 108 12 chr13 23158603 23158686 -96586212 + L1MEd LINE L1 464 554 -5565 801 183 0 21 chr13 23158688 23158830 -96586068 - FLAM_C SINE Alu -3 140 2 366 266 9 0 chr13 23158919 23159028 -96585870 + L1MEd LINE L1 671 780 -5339 336 265 204 6 chr13 23159062 23159224 -96585674 + L1MEd LINE L1 1064 1257 -4862 2313 71 0 37 chr13 23159243 23159566 -96585332 - AluY SINE Alu 0 311 1 1892 135 30 0 chr13 23159731 23160027 -96584871 + AluSq SINE Alu 9 313 0 780 149 0 0 chr13 23160058 23160179 -96584719 + FLAM_C SINE Alu 10 130 -13 1778 173 0 3 chr13 23160860 23161166 -96583732 - AluJb SINE Alu -7 305 1 805 127 16 0 chr13 23161265 23161391 -96583507 - FLAM_C SINE Alu -4 139 12 2072 34 52 4 chr13 23162334 23162647 -96582251 + AluY SINE Alu 1 326 0 1532 98 9 0 chr13 23163637 23163851 -96581047 - MER4E LTR ERV1 0 766 551 313 44 0 22 chr13 23163846 23163891 -96581007 - MER4E LTR ERV1 -735 44 1 * 1548 191 65 9 chr13 23164475 23164800 -96580098 - MER61A LTR ERV1 0 343 1 2443 61 3 13 chr13 23164890 23165203 -96579695 + AluY SINE Alu 1 310 -1 1900 108 14 21 chr13 23165331 23165617 -96579281 - MER61A-int LTR ERV1 -108 6650 6367 8673 126 55 38 chr13 23165717 23165896 -96579002 - MER61A-int LTR ERV1 -761 5997 5823 2088 122 3 0 chr13 23165896 23166192 -96578706 + AluSx SINE Alu 1 297 -15 8673 126 55 38 chr13 23166192 23167531 -96577367 - MER61A-int LTR ERV1 -935 5823 4452 3639 128 44 9 chr13 23167533 23168096 -96576802 - MER61A-int LTR ERV1 -2673 4085 3503 4133 117 73 22 chr13 23168133 23168938 -96575960 - MER61A-int LTR ERV1 -3666 3092 2247 3920 95 4 2 chr13 23168938 23169456 -96575442 + MER41A LTR ERV1 1 519 -35 1585 146 0 24 chr13 23169456 23169710 -96575188 - AluJb SINE Alu -58 254 7 403 224 0 12 chr13 23169717 23169802 -96575096 - L1ME2 LINE L1 -62 6102 6019 565 158 20 20 chr13 23169910 23170062 -96574836 - L1M4 LINE L1 -3183 2963 2812 309 275 180 35 chr13 23170166 23170533 -96574365 - L1M4 LINE L1 -2002 4144 3725 1764 131 6 70 chr13 23170684 23170997 -96573901 - AluJb SINE Alu -18 294 2 6929 65 33 0 chr13 23171041 23171909 -96572989 + MER11D LTR ERVK 1 897 0 509 309 16 3 chr13 23172484 23172676 -96572222 - L1MC4a LINE L1 -332 5910 5713 243 0 0 0 chr13 23173222 23173249 -96571649 + (ATG)n Simple_repeat Simple_repeat 1 27 0 2119 98 16 10 chr13 23173478 23173783 -96571115 + AluSx SINE Alu 1 307 -5 234 210 12 25 chr13 23174593 23174674 -96570224 + CT-rich Low_complexity Low_complexity 1 80 0 294 208 73 10 chr13 23174939 23175035 -96569863 - L1ME4a LINE L1 0 6121 6020 524 265 57 29 chr13 23175108 23175353 -96569545 + MLT1J1 LTR MaLR 45 296 -150 2070 124 3 13 chr13 23175427 23175741 -96569157 + AluSx SINE Alu 1 311 -1 800 163 0 0 chr13 23177979 23178102 -96566796 - FLAM_C SINE Alu -8 125 3 1324 168 71 4 chr13 23178814 23179082 -96565816 + AluJo SINE Alu 19 304 -8 625 281 46 12 chr13 23179105 23179433 -96565465 + L1M4 LINE L1 2211 2549 -3597 2495 203 22 42 chr13 23179521 23180112 -96564786 + MER119 DNA MER1_type 5 583 0 641 119 8 42 chr13 23180161 23180279 -96564619 + FLAM_C SINE Alu 30 143 0 1045 139 11 37 chr13 23180293 23180480 -96564418 + AluJb SINE Alu 127 308 -4 400 243 64 125 chr13 23180485 23180537 -96564361 + L1M4 LINE L1 2678 2732 -3414 2320 63 37 0 chr13 23180537 23180837 -96564061 + AluY SINE Alu 1 311 0 400 243 64 125 chr13 23180837 23181080 -96563818 + L1M4 LINE L1 2732 2955 -3191 2217 141 60 0 chr13 23181082 23181464 -96563434 - L1PA16 LINE L1 0 6166 5762 314 109 0 0 chr13 23181474 23181520 -96563378 + L1P4 LINE L1 5755 5800 -366 423 245 78 91 chr13 23181531 23181800 -96563098 + L1M4 LINE L1 2945 3205 -2941 1890 155 0 0 chr13 23181800 23182110 -96562788 + AluSx SINE Alu 1 310 -2 423 245 78 91 chr13 23182110 23182354 -96562544 + L1M4 LINE L1 3205 3451 -2695 3508 179 42 23 chr13 23182404 23183140 -96561758 + L1MC3 LINE L1 7015 7764 -21 23 54 0 0 chr13 23183247 23183284 -96561614 + AT_rich Low_complexity Low_complexity 1 37 0 1833 152 0 3 chr13 23183294 23183591 -96561307 + AluJb SINE Alu 1 296 -16 2178 78 0 3 chr13 23183593 23183941 -96560957 + AluY SINE Alu 1 347 0 724 285 81 4 chr13 23183941 23184201 -96560697 + L1M4 LINE L1 3950 4229 -1917 22 35 0 0 chr13 23185075 23185104 -96559794 + AT_rich Low_complexity Low_complexity 1 29 0 2862 152 30 4 chr13 23185420 23185921 -96558977 - L1MA4 LINE L1 -11 6289 5776 308 234 16 0 chr13 23185952 23186016 -96558882 - L1MC4 LINE L1 -1339 6703 6639 2517 30 0 7 chr13 23186019 23186321 -96558577 - AluY SINE Alu -11 300 1 3270 125 29 5 chr13 23186321 23186959 -96557939 - L1M2 LINE L1 -514 5786 5127 342 297 25 34 chr13 23187584 23187702 -96557196 + MIR SINE MIR 24 140 -68 1061 257 86 24 chr13 23187717 23188091 -96556807 - MLT2C1 LTR ERVL 0 397 1 401 327 47 45 chr13 23188241 23188666 -96556232 - L1ME4a LINE L1 -173 5948 5523 875 172 105 62 chr13 23188797 23188924 -96555974 + Tigger3(Golem) DNA MER2_type 1 142 -2887 2424 54 3 0 chr13 23188924 23189220 -96555678 + AluY SINE Alu 2 298 -13 875 172 105 62 chr13 23189220 23189301 -96555597 + Tigger3(Golem) DNA MER2_type 142 218 -2811 * 3747 135 66 2 chr13 23189276 23189416 -96555482 + Tigger3(Golem) DNA MER2_type 2354 2484 -545 575 242 0 8 chr13 23189416 23189540 -96555358 + FLAM_A SINE Alu 1 123 -10 3747 135 66 2 chr13 23189540 23190034 -96554864 + Tigger3(Golem) DNA MER2_type 2484 3029 0 1685 127 4 12 chr13 23190216 23190475 -96554423 - Tigger2 DNA MER2_type 0 2718 2462 4131 142 53 30 chr13 23190512 23190815 -96554083 - Tigger2 DNA MER2_type -1946 772 477 2373 51 3 0 chr13 23190815 23191107 -96553791 - AluY SINE Alu -18 293 1 4131 142 53 30 chr13 23191107 23191558 -96553340 - Tigger2 DNA MER2_type -2241 477 1 1651 180 81 33 chr13 23192753 23193148 -96551750 - MLT2D LTR ERVL 0 414 1 2169 107 0 0 chr13 23194349 23194647 -96550251 + AluSg SINE Alu 1 298 -12 357 225 179 26 chr13 23195228 23195379 -96549519 - MER5B DNA MER1_type -4 174 1 199 257 40 99 chr13 23195401 23195502 -96549396 - MIR SINE MIR -84 124 30 245 304 26 61 chr13 23195617 23195732 -96549166 + L3b LINE CR1 1327 1437 -146 256 228 0 0 chr13 23196689 23196746 -96548152 + MER53 DNA DNA 1 57 -132 699 141 141 0 chr13 23196746 23196867 -96548031 + FRAM SINE Alu 23 160 -16 304 206 0 14 chr13 23196868 23196941 -96547957 - MER53 DNA DNA -37 152 81 2144 94 3 16 chr13 23198296 23198604 -96546294 + AluSq SINE Alu 2 305 -8 2253 78 0 0 chr13 23199828 23200121 -96544777 - AluSc SINE Alu -14 295 3 879 238 17 74 chr13 23200290 23200589 -96544309 + L1MA9 LINE L1 5987 6268 -44 1460 148 72 14 chr13 23202285 23202562 -96542336 + AluJb SINE Alu 5 297 -15 216 175 70 35 chr13 23202972 23203029 -96541869 + L3 LINE CR1 1519 1577 0 2388 54 0 19 chr13 23203504 23203821 -96541077 - AluY SINE Alu 0 311 1 534 188 10 0 chr13 23204440 23204541 -96540357 - MLT1G LTR MaLR 0 590 489 873 57 63 10 chr13 23206626 23206964 -96537934 + (TG)n Simple_repeat Simple_repeat 1 537 0 702 58 64 23 chr13 23206991 23207163 -96537735 + (TG)n Simple_repeat Simple_repeat 2 180 0 213 279 141 55 chr13 23207451 23207622 -96537276 + MIR3 SINE MIR 13 173 -35 2272 81 0 3 chr13 23207706 23208004 -96536894 - AluSq SINE Alu -16 297 1 361 227 160 34 chr13 23208219 23208338 -96536560 - MER63 DNA MER1_type -302 760 1 227 273 64 27 chr13 23208428 23208538 -96536360 + MIR SINE MIR 120 233 -29 297 156 180 3 chr13 23209333 23209457 -96535441 + MER20 DNA MER1_type 30 219 0 2386 96 0 3 chr13 23210903 23211204 -96533694 + AluSp SINE Alu 1 300 -13 2518 65 3 0 chr13 23211205 23211540 -96533358 + AluY SINE Alu 1 336 0 2193 102 3 14 chr13 23211925 23212220 -96532678 + AluSx SINE Alu 1 292 -20 565 262 83 35 chr13 23212654 23212883 -96532015 + MIR SINE MIR 7 246 -16 634 314 31 14 chr13 23213600 23213893 -96531005 + L1MB7 LINE L1 5863 6160 -24 218 103 0 26 chr13 23218062 23218101 -96526797 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 233 373 105 19 chr13 23218266 23218580 -96526318 + L2 LINE L2 2222 2562 -752 246 32 0 0 chr13 23219597 23219628 -96525270 + (CA)n Simple_repeat Simple_repeat 1 31 0 2282 110 3 7 chr13 23220335 23220643 -96524255 - AluSq SINE Alu -6 307 1 189 279 49 0 chr13 23220875 23220936 -96523962 - MIR SINE MIR -43 219 156 2966 3 0 19 chr13 23221159 23221481 -96523417 + AluYb8 SINE Alu 1 316 -2 926 213 30 53 chr13 23221791 23222054 -96522844 + MIR SINE MIR 5 261 -1 2117 137 0 19 chr13 23222086 23222393 -96522505 + AluJo SINE Alu 1 301 -11 180 254 0 34 chr13 23222702 23222761 -96522137 + MIR SINE MIR 206 262 0 246 160 40 0 chr13 23222776 23222826 -96522072 - L1ME LINE L1 -452 5669 5618 280 279 27 82 chr13 23224987 23225134 -96519764 + L2 LINE L2 2925 3063 -209 2449 95 0 9 chr13 23225950 23226266 -96518632 + AluSq SINE Alu 1 313 0 199 208 19 19 chr13 23226945 23226998 -96517900 - L2 LINE L2 0 3313 3261 349 282 70 14 chr13 23227392 23227534 -96517364 - L2 LINE L2 0 3313 3164 2090 112 7 0 chr13 23227969 23228273 -96516625 - AluSx SINE Alu 0 308 3 706 65 56 28 chr13 23228291 23228399 -96516499 - HY1 scRNA scRNA -1 111 1 1088 156 13 69 chr13 23228399 23228622 -96516276 - AluJo SINE Alu -16 296 85 519 126 58 0 chr13 23228626 23228713 -96516185 - FRAM SINE Alu -59 117 26 1922 135 20 24 chr13 23228734 23229030 -96515868 - AluSx SINE Alu -17 295 1 219 36 0 0 chr13 23229727 23229755 -96515143 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 211 318 15 0 chr13 23230112 23230178 -96514720 - L2 LINE L2 -527 2787 2721 2117 134 3 13 chr13 23230398 23230705 -96514193 - AluJb SINE Alu -8 304 1 295 313 0 0 chr13 23232279 23232359 -96512539 - MER5A DNA MER1_type -100 89 10 1716 141 111 4 chr13 23232418 23232680 -96512218 - AluSx SINE Alu -19 293 4 227 35 0 0 chr13 23233298 23233327 -96511571 + MER5A DNA MER1_type 41 69 -120 614 200 21 14 chr13 23233331 23233471 -96511427 + FLAM_A SINE Alu 2 142 0 1057 118 11 6 chr13 23233536 23233714 -96511184 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 409 218 11 0 chr13 23233716 23233803 -96511095 + MER5A DNA MER1_type 64 151 -38 451 269 69 40 chr13 23233824 23233999 -96510899 - MER97b DNA MER1_type? -859 194 15 856 158 0 0 chr13 23234855 23234982 -96509916 + FLAM_C SINE Alu 1 127 -16 309 282 77 46 chr13 23238487 23238682 -96506216 - L1ME4a LINE L1 -2 6119 5919 333 254 91 27 chr13 23238870 23238980 -96505918 - L1ME4a LINE L1 -474 5647 5531 2245 120 0 0 chr13 23239258 23239557 -96505341 - AluSx SINE Alu -13 299 1 918 129 0 0 chr13 23239781 23239905 -96504993 + FLAM_C SINE Alu 1 124 -19 227 337 36 0 chr13 23239914 23239997 -96504901 - L2 LINE L2 -561 2753 2668 2357 89 7 0 chr13 23240368 23240671 -96504227 + AluY SINE Alu 1 305 -6 181 353 173 0 chr13 23240680 23240819 -96504079 - MIR SINE MIR -3 259 97 861 232 150 15 chr13 23240880 23241220 -96503678 + LTR37A LTR ERV1 3 388 -38 180 125 0 0 chr13 23241654 23241686 -96503212 + (T)n Simple_repeat Simple_repeat 1 32 0 1869 136 48 42 chr13 23241759 23242069 -96502829 - AluJb SINE Alu 0 312 1 1518 187 63 20 chr13 23242642 23242989 -96501909 + L1PA16 LINE L1 5803 6164 -2 216 229 133 19 chr13 23243884 23243989 -96500909 + L2 LINE L2 3150 3266 -6 1898 174 3 3 chr13 23244085 23244389 -96500509 + AluJo SINE Alu 3 306 -6 201 74 0 0 chr13 23244391 23244418 -96500480 + (GGA)n Simple_repeat Simple_repeat 3 29 0 583 48 24 0 chr13 23244418 23244501 -96500397 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 219 297 0 0 chr13 23244834 23244898 -96500000 + L2 LINE L2 1912 1975 -1339 628 250 48 18 chr13 23245065 23245293 -96499605 - MER90 LTR ERV1 0 575 341 1054 153 222 106 chr13 23245680 23245844 -96499054 - LTR52 LTR ERVL -5 416 273 2370 76 0 10 chr13 23245844 23246134 -96498764 + AluY SINE Alu 1 287 -24 1054 153 222 106 chr13 23246134 23246329 -96498569 - LTR52 LTR ERVL -148 273 15 2016 155 0 7 chr13 23246329 23246632 -96498266 + AluSx SINE Alu 1 301 -11 437 211 0 11 chr13 23246781 23246871 -96498027 - MIR SINE MIR -22 240 152 1731 145 25 22 chr13 23246882 23246940 -96497958 - MER2 DNA MER2_type -25 320 264 2118 123 10 0 chr13 23246940 23247233 -96497665 + AluSx SINE Alu 1 296 -16 1731 145 25 22 chr13 23247233 23247492 -96497406 - MER2 DNA MER2_type -81 264 2 520 303 26 33 chr13 23247493 23247645 -96497253 - MIR SINE MIR -111 151 1 246 278 157 28 chr13 23248316 23248424 -96496474 - MIR3 SINE MIR -36 172 66 506 151 21 11 chr13 23248618 23248711 -96496187 - MIR SINE MIR -98 164 71 1185 165 54 19 chr13 23248846 23249106 -96495792 - LTR54 LTR ERV1 0 510 242 1934 144 7 3 chr13 23249122 23249421 -96495477 - AluSq SINE Alu -13 300 1 182 305 53 21 chr13 23250279 23250374 -96494524 - MER5A DNA MER1_type -67 122 25 628 157 0 0 chr13 23250693 23250808 -96494090 - FLAM_A SINE Alu 0 142 28 1849 113 16 12 chr13 23251342 23251599 -96493299 + AluSc SINE Alu 51 308 -1 246 276 61 31 chr13 23252016 23252114 -96492784 + MLT1G1 LTR MaLR 1 101 -494 2165 152 66 76 chr13 23252337 23252577 -96492321 + LTR54 LTR ERV1 1 242 -268 2376 93 3 3 chr13 23252577 23252878 -96492020 + AluSx SINE Alu 1 301 -11 2165 152 66 76 chr13 23252878 23253152 -96491746 + LTR54 LTR ERV1 242 510 0 506 151 21 11 chr13 23253287 23253380 -96491518 + MIR SINE MIR 71 164 -98 196 130 43 0 chr13 23255908 23255954 -96488944 + GA-rich Low_complexity Low_complexity 2 49 0 205 103 0 0 chr13 23261917 23261946 -96482952 + MIR SINE MIR 84 112 -96 2541 51 0 0 chr13 23261946 23262240 -96482658 - AluY SINE Alu -17 294 1 409 131 48 7 chr13 23262988 23263133 -96481765 + (TA)n Simple_repeat Simple_repeat 1 151 0 40 0 0 0 chr13 23263147 23263187 -96481711 + AT_rich Low_complexity Low_complexity 1 40 0 1972 110 3 28 chr13 23263394 23263708 -96481190 - AluSq SINE Alu 0 309 3 2542 59 0 3 chr13 23263845 23264148 -96480750 + AluY SINE Alu 1 302 -9 323 190 36 51 chr13 23264627 23264820 -96480078 + L1ME2 LINE L1 5312 5495 -685 890 240 61 51 chr13 23264887 23265199 -96479699 + L1MEd LINE L1 401 715 -5404 * 939 247 29 14 chr13 23265192 23265467 -96479431 + L1MEd LINE L1 979 1257 -4862 315 291 56 53 chr13 23265512 23265832 -96479066 + L1MEd LINE L1 1336 1656 -4473 272 344 176 0 chr13 23265974 23266099 -96478799 - L2 LINE L2 -299 2973 2827 1573 117 46 4 chr13 23266099 23266338 -96478560 + L1PA13 LINE L1 5321 5569 -596 4958 56 13 20 chr13 23266338 23267370 -96477528 - MER11A LTR ERVK 0 1266 6 4140 86 59 3 chr13 23267370 23267942 -96476956 + L1PA13 LINE L1 5560 6163 0 987 241 87 78 chr13 23267942 23268231 -96476667 + L1ME2 LINE L1 5737 6022 -142 2349 79 0 0 chr13 23268231 23268522 -96476376 - AluY SINE Alu -20 291 1 987 241 87 78 chr13 23268522 23268539 -96476359 + L1ME2 LINE L1 6022 6037 -127 1800 144 0 0 chr13 23268539 23268789 -96476109 - AluSq SINE Alu -63 250 1 987 241 87 78 chr13 23268789 23268905 -96475993 + L1ME2 LINE L1 6037 6164 0 373 181 150 8 chr13 23268918 23269051 -96475847 + L1MC5 LINE L1 7773 7924 -37 357 248 0 29 chr13 23269163 23269268 -96475630 + L1ME3A LINE L1 6068 6169 -1 764 219 6 37 chr13 23269738 23269902 -96474996 - FRAM SINE Alu -3 163 5 678 191 28 14 chr13 23269910 23270051 -96474847 - MER5B DNA MER1_type -35 143 1 1928 115 0 0 chr13 23270316 23270569 -96474329 + AluSg SINE Alu 46 298 -12 2272 79 0 36 chr13 23270631 23270936 -96473962 + AluY SINE Alu 1 294 -17 209 292 9 53 chr13 23271204 23271317 -96473581 + MIR SINE MIR 4 111 -97 1861 242 120 2 chr13 23271359 23271843 -96473055 + MLT1H LTR MaLR 9 549 0 1001 231 99 0 chr13 23272432 23272714 -96472184 + MER33 DNA MER1_type 1 310 -14 723 19 88 6 chr13 23272835 23272994 -96471904 + (TA)n Simple_repeat Simple_repeat 1 172 0 22 35 0 0 chr13 23273938 23273967 -96470931 + GC_rich Low_complexity Low_complexity 1 29 0 2293 95 0 25 chr13 23275622 23275938 -96468960 - AluSx SINE Alu -4 308 1 1136 142 6 0 chr13 23276177 23276353 -96468545 - AluSg/x SINE Alu 0 312 136 195 42 0 0 chr13 23276623 23276647 -96468251 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1900 150 0 7 chr13 23276650 23276936 -96467962 - AluSx SINE Alu -28 284 1 1308 214 23 8 chr13 23277184 23277450 -96467448 - L1MB8 LINE L1 -6 6172 5903 26 0 0 0 chr13 23278183 23278209 -96466689 + AT_rich Low_complexity Low_complexity 1 26 0 642 257 30 15 chr13 23279216 23279418 -96465480 + L1MA6 LINE L1 5746 5950 -350 490 213 9 0 chr13 23279419 23279527 -96465371 + L1MA4A LINE L1 5746 5854 -449 538 127 218 0 chr13 23279570 23279680 -96465218 - MER1B DNA MER1_type -163 134 1 364 282 117 70 chr13 23279680 23279893 -96465005 + L2 LINE L2 2673 2895 -419 270 116 47 0 chr13 23280638 23280702 -96464196 - Alu SINE Alu 0 306 241 2210 92 7 10 chr13 23280758 23281096 -96463802 + AluSx SINE Alu 1 312 0 1700 162 7 23 chr13 23281492 23281794 -96463104 + AluJb SINE Alu 2 298 -14 384 335 60 38 chr13 23281804 23282252 -96462646 - L1ME4a LINE L1 -143 5978 5521 2257 121 0 0 chr13 23284201 23284506 -96460392 - AluSx SINE Alu -7 305 1 1221 120 54 7 chr13 23284722 23285086 -96459812 + MSTA LTR MaLR 3 426 -2 2216 97 3 19 chr13 23285676 23285985 -96458913 + AluSc SINE Alu 1 304 -5 203 189 0 57 chr13 23286580 23286633 -96458265 + GA-rich Low_complexity Low_complexity 2 51 0 2089 77 14 7 chr13 23286739 23287025 -96457873 + AluSx SINE Alu 1 288 -24 2702 133 29 16 chr13 23287279 23287942 -96456956 + L1M2 LINE L1 4915 5584 -728 272 310 106 9 chr13 23288519 23288632 -96456266 - L2 LINE L2 -518 2796 2673 2073 122 6 6 chr13 23288964 23289276 -96455622 + AluSx SINE Alu 1 312 0 2397 58 0 48 chr13 23290082 23290394 -96454504 - AluY SINE Alu -14 297 1 324 0 0 0 chr13 23291766 23291802 -96453096 + (TG)n Simple_repeat Simple_repeat 2 37 0 2540 41 0 0 chr13 23291900 23292192 -96452706 - AluY SINE Alu -19 292 1 201 275 0 0 chr13 23292388 23292428 -96452470 - L2 LINE L2 -2918 396 357 1667 128 0 8 chr13 23292823 23293065 -96451833 + AluSx SINE Alu 1 240 -72 225 154 0 0 chr13 23293075 23293114 -96451784 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1062 127 33 0 chr13 23293953 23294103 -96450795 + AluJb SINE Alu 130 284 -28 2265 105 0 0 chr13 23294345 23294640 -96450258 + AluSc SINE Alu 1 295 -14 2243 95 0 7 chr13 23295165 23295461 -96449437 - AluSc SINE Alu -15 294 1 237 217 36 84 chr13 23295592 23295675 -96449223 + MIR SINE MIR 117 195 -67 22 0 0 0 chr13 23297002 23297024 -96447874 + AT_rich Low_complexity Low_complexity 1 22 0 345 218 39 70 chr13 23297815 23298022 -96446876 - L1ME LINE L1 -674 5496 5289 1127 226 16 69 chr13 23298026 23298344 -96446554 - AluJo SINE Alu -1 301 1 2178 83 7 0 chr13 23298614 23298892 -96446006 + AluSp SINE Alu 15 294 -19 201 94 0 0 chr13 23299303 23299335 -96445563 + (T)n Simple_repeat Simple_repeat 1 32 0 5114 130 38 19 chr13 23299421 23299483 -96445415 + L1PA16 LINE L1 5286 5345 -821 2404 76 0 7 chr13 23299483 23299787 -96445111 - AluY SINE Alu -9 302 1 5114 130 38 19 chr13 23299787 23300587 -96444311 + L1PA16 LINE L1 5345 6165 -1 23 33 0 0 chr13 23301024 23301054 -96443844 + AT_rich Low_complexity Low_complexity 1 30 0 2120 116 0 26 chr13 23301076 23301386 -96443512 - AluSx SINE Alu -10 302 1 21 0 0 0 chr13 23302109 23302130 -96442768 + AT_rich Low_complexity Low_complexity 1 21 0 1714 181 0 7 chr13 23302135 23302427 -96442471 - AluJo SINE Alu -22 290 1 254 348 31 10 chr13 23303308 23303408 -96441490 - MIR SINE MIR -99 109 7 607 280 21 74 chr13 23303514 23303757 -96441141 - MER102a DNA MER1_type -1 329 100 945 145 0 0 chr13 23304263 23304394 -96440504 + FLAM_C SINE Alu 2 132 -1 21 0 0 0 chr13 23304657 23304678 -96440220 + AT_rich Low_complexity Low_complexity 1 21 0 1903 163 0 3 chr13 23304856 23305150 -96439748 + AluJb SINE Alu 1 293 -19 225 286 130 52 chr13 23305393 23305547 -96439351 - L3 LINE CR1 -93 1484 1319 1959 150 6 25 chr13 23305784 23306098 -96438800 + AluSx SINE Alu 1 308 -4 308 143 0 79 chr13 23307291 23307354 -96437544 - MLT1C LTR MaLR -409 58 1 1349 178 23 100 chr13 23307358 23307493 -96437405 - MLT1C-int LTR MaLR -4 1367 1223 1949 142 0 14 chr13 23307493 23307788 -96437110 + AluSx SINE Alu 17 307 -5 1349 178 23 100 chr13 23307788 23308001 -96436897 - MLT1C-int LTR MaLR -148 1223 1046 1635 188 10 23 chr13 23308227 23308530 -96436368 + AluJo SINE Alu 1 299 -13 1516 177 0 71 chr13 23309064 23309375 -96435523 - AluJo SINE Alu -23 289 1 933 177 11 17 chr13 23309464 23309639 -96435259 + AluJo SINE Alu 35 208 -104 6702 222 102 29 chr13 23309640 23311586 -96433312 - L1 LINE L1 -846 5536 3734 2125 104 10 7 chr13 23311586 23311884 -96433014 - AluY SINE Alu -12 299 1 6702 222 102 29 chr13 23311884 23314533 -96430365 - L1 LINE L1 -2648 3734 526 289 200 0 0 chr13 23317282 23317327 -96427571 + MER3 DNA MER1_type 46 90 -119 * 866 115 7 47 chr13 23317288 23317436 -96427462 - MER3 DNA MER1_type -4 205 64 769 180 90 198 chr13 23317436 23317880 -96427018 - MSTD LTR MaLR 0 396 1 464 370 94 36 chr13 23317946 23318467 -96426431 - L2 LINE L2 -550 2764 2214 250 314 176 17 chr13 23319181 23319420 -96425478 - L2 LINE L2 -1093 2221 1945 253 286 101 25 chr13 23319737 23319856 -96425042 + L3 LINE CR1 476 603 -974 1698 181 7 3 chr13 23321270 23321558 -96423340 + AluJb SINE Alu 1 289 -23 1833 155 18 3 chr13 23321613 23321897 -96423001 - AluSx SINE Alu -24 288 1 26 0 0 0 chr13 23322128 23322154 -96422744 + AT_rich Low_complexity Low_complexity 1 26 0 285 266 75 0 chr13 23322303 23322397 -96422501 - L1MC4a LINE L1 -1869 5939 5839 27 29 0 0 chr13 23323195 23323229 -96421669 + AT_rich Low_complexity Low_complexity 1 34 0 4460 152 67 17 chr13 23324352 23324584 -96420314 + MER6 DNA MER2_type 1 220 -645 360 0 0 0 chr13 23324584 23324624 -96420274 + (TG)n Simple_repeat Simple_repeat 2 41 0 4460 152 67 17 chr13 23324624 23325214 -96419684 + MER6 DNA MER2_type 220 864 -1 500 262 166 0 chr13 23325439 23325626 -96419272 + MIR SINE MIR 26 243 -19 398 265 31 10 chr13 23327877 23327975 -96416923 + L2 LINE L2 3200 3299 -14 314 262 119 0 chr13 23328002 23328128 -96416770 + L1ME4a LINE L1 5978 6118 -3 1473 164 80 0 chr13 23328249 23328511 -96416387 + AluJb SINE Alu 11 293 -19 1870 108 4 4 chr13 23328853 23329122 -96415776 - AluSg1 SINE Alu 0 309 41 1472 161 37 37 chr13 23329647 23329945 -96414953 + AluJo SINE Alu 1 298 -14 1731 149 46 7 chr13 23330175 23330457 -96414441 - AluSg SINE Alu -12 298 6 1655 152 37 4 chr13 23330868 23331137 -96413761 + AluJo SINE Alu 1 278 -34 21 0 0 0 chr13 23331338 23331359 -96413539 + AT_rich Low_complexity Low_complexity 1 21 0 553 265 125 5 chr13 23331794 23331994 -96412904 - MIR SINE MIR -38 224 1 3283 147 46 18 chr13 23332079 23332758 -96412140 - L1MB4 LINE L1 -7 6671 5974 5579 50 81 1 chr13 23332770 23333514 -96411384 - L1PA7 LINE L1 -2 6152 5350 42764 33 23 1 chr13 23333526 23339549 -96405349 - L1PA3 LINE L1 0 6155 2 2349 77 0 3 chr13 23339565 23339862 -96405036 - AluY SINE Alu -15 296 1 778 133 36 182 chr13 23339863 23340033 -96404865 - L1MB4 LINE L1 -709 5969 5845 1638 194 13 3 chr13 23340033 23340332 -96404566 - AluJo SINE Alu -6 306 5 778 133 36 182 chr13 23340332 23340439 -96404459 - L1MB4 LINE L1 -833 5845 5724 1913 171 65 36 chr13 23340440 23340511 -96404387 - Tigger2a DNA MER2_type -2274 434 367 1434 172 12 106 chr13 23340511 23340842 -96404056 - AluJo SINE Alu -2 300 1 1913 171 65 36 chr13 23340842 23341184 -96403714 - Tigger2a DNA MER2_type -2341 367 9 4063 185 43 138 chr13 23341191 23342309 -96402589 - L1MB4 LINE L1 -920 5724 4501 414 0 0 0 chr13 23342309 23342355 -96402543 + (TG)n Simple_repeat Simple_repeat 2 47 0 4063 185 43 138 chr13 23342355 23342763 -96402135 - L1MB4 LINE L1 -2143 4501 4355 1609 201 0 16 chr13 23342763 23343077 -96401821 - AluJb SINE Alu 0 312 4 4063 185 43 138 chr13 23343077 23343152 -96401746 - L1MB4 LINE L1 -2289 4355 4274 2096 169 26 3 chr13 23343152 23343501 -96401397 - MER73 LTR ERVL 0 644 288 * 2195 174 23 8 chr13 23343497 23343881 -96401017 - MER54A LTR ERVL -509 392 3 4758 218 51 21 chr13 23343882 23344317 -96400581 - L1MB4 LINE L1 -2367 4277 3856 2127 126 7 0 chr13 23344317 23344611 -96400287 + AluSx SINE Alu 1 296 -16 4758 218 51 21 chr13 23344611 23345878 -96399020 - L1MB4 LINE L1 -2788 3856 2521 2008 177 93 7 chr13 23345909 23346360 -96398538 - L1MB2 LINE L1 -1 6170 5681 * 3901 189 123 55 chr13 23346359 23346990 -96397908 - L1MB4 LINE L1 -4125 2521 1934 2280 103 3 3 chr13 23346990 23347302 -96397596 - AluSx SINE Alu 0 312 1 216 0 0 0 chr13 23347303 23347327 -96397571 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1974 132 3 3 chr13 23347329 23347616 -96397282 - AluSx SINE Alu -25 287 1 3901 189 123 55 chr13 23347616 23347796 -96397102 - L1MB4 LINE L1 -4712 1934 1768 1920 208 47 13 chr13 23347796 23348248 -96396650 - MLT1C LTR MaLR 0 467 1 3901 189 123 55 chr13 23348248 23348678 -96396220 - L1MB4 LINE L1 -4878 1768 1189 3040 146 64 39 chr13 23348762 23349291 -96395607 - LTR9 LTR ERV1 -37 575 30 1973 143 7 0 chr13 23349291 23349598 -96395300 - AluSx SINE Alu -1 311 3 3040 146 64 39 chr13 23349598 23349629 -96395269 - LTR9 LTR ERV1 -582 30 1 508 207 107 0 chr13 23349798 23349938 -96394960 - L1M2 LINE L1 -4159 2690 2536 2094 118 0 0 chr13 23349973 23350252 -96394646 - AluSg SINE Alu -31 279 1 445 211 68 23 chr13 23350284 23350417 -96394481 - L1MB4 LINE L1 -5587 955 817 405 278 23 8 chr13 23350505 23350638 -96394260 - L1MB4 LINE L1 -5710 936 802 309 249 93 63 chr13 23350943 23351148 -96393750 - L1MB4 LINE L1 -6293 249 39 276 264 64 43 chr13 23351549 23351689 -96393209 + L1MC4 LINE L1 7190 7332 -710 255 256 65 87 chr13 23351795 23352099 -96392799 + L1MC4 LINE L1 7274 7677 -365 1945 128 11 3 chr13 23353377 23353659 -96391239 + AluSx SINE Alu 7 290 -22 2387 90 3 0 chr13 23353659 23353959 -96390939 + AluSp SINE Alu 1 301 -12 1062 118 0 20 chr13 23353959 23354112 -96390786 - AluSq/x SINE Alu -162 151 2 1100 155 98 136 chr13 23354335 23354400 -96390498 - MLT1A1 LTR MaLR 0 365 299 1955 5 0 0 chr13 23354400 23354612 -96390286 + AluYa5 SINE Alu 100 311 0 1100 155 98 136 chr13 23354612 23354914 -96389984 - MLT1A1 LTR MaLR -66 299 12 349 254 98 33 chr13 23355310 23355432 -96389466 - HAL1 LINE L1 -100 2407 2278 1360 182 102 15 chr13 23355702 23355966 -96388932 - AluJb SINE Alu -25 287 1 600 277 80 9 chr13 23355981 23356205 -96388693 - HAL1 LINE L1 -628 1879 1640 454 220 87 144 chr13 23356841 23357105 -96387793 - MIR SINE MIR -10 252 4 2189 107 0 10 chr13 23358038 23358337 -96386561 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr13 23358890 23358912 -96385986 + AT_rich Low_complexity Low_complexity 1 22 0 808 245 76 8 chr13 23359383 23359620 -96385278 + MER46C DNA MER2_type 86 338 0 1849 164 0 10 chr13 23359626 23359925 -96384973 - AluJo SINE Alu -16 296 1 208 198 169 0 chr13 23360119 23360175 -96384723 - MIR SINE MIR -76 132 67 2025 118 3 37 chr13 23361003 23361326 -96383572 + AluSx SINE Alu 1 312 0 12979 191 32 29 chr13 23361300 23367724 -96377174 + L1PB1 LINE L1 104 6864 -3 2345 73 0 23 chr13 23368508 23368809 -96376089 + AluSx SINE Alu 1 294 -18 1826 122 11 8 chr13 23369578 23369841 -96375057 + AluSx SINE Alu 42 305 -7 2195 110 0 3 chr13 23370068 23370360 -96374538 + AluSg SINE Alu 1 291 -19 436 213 46 9 chr13 23370403 23370511 -96374387 - L1ME1 LINE L1 -6 6160 6049 25 0 0 0 chr13 23370804 23370829 -96374069 + AT_rich Low_complexity Low_complexity 1 25 0 1252 294 88 13 chr13 23370984 23371439 -96373459 - L2 LINE L2 0 3313 2825 22 0 0 0 chr13 23371937 23371959 -96372939 + AT_rich Low_complexity Low_complexity 1 22 0 727 189 0 0 chr13 23372778 23372900 -96371998 + FRAM SINE Alu 1 122 -54 384 265 179 0 chr13 23372903 23373054 -96371844 - L3 LINE CR1 -723 854 677 1331 98 113 0 chr13 23373432 23373636 -96371262 + MER30 DNA MER1_type 4 230 0 489 224 97 30 chr13 23373948 23374113 -96370785 - MIR SINE MIR -1 261 86 2278 119 3 0 chr13 23374165 23374476 -96370422 - AluSx SINE Alu 0 312 1 398 329 127 21 chr13 23374858 23375095 -96369803 - MIR SINE MIR 0 262 1 641 172 6 38 chr13 23375133 23375211 -96369687 - L1MB3 LINE L1 -12 6171 6099 2304 106 0 3 chr13 23375211 23375513 -96369385 + AluSx SINE Alu 1 301 -11 641 172 6 38 chr13 23375513 23375591 -96369307 - L1MB3 LINE L1 -84 6099 6020 23 33 0 0 chr13 23375593 23375623 -96369275 + AT_rich Low_complexity Low_complexity 1 30 0 694 218 0 0 chr13 23375875 23375999 -96368899 + FLAM_A SINE Alu 1 124 -9 289 329 7 20 chr13 23376075 23376169 -96368729 - MARNA DNA Mariner -179 407 314 1441 91 68 27 chr13 23376169 23376390 -96368508 - MER30 DNA MER1_type 0 230 1 289 329 7 20 chr13 23376390 23376441 -96368457 - MARNA DNA Mariner -272 314 264 383 301 0 32 chr13 23376722 23376845 -96368053 - L2 LINE L2 -5 3267 3149 2242 93 3 0 chr13 23377836 23378125 -96366773 - AluSp SINE Alu -23 290 1 2540 57 0 0 chr13 23378968 23379269 -96365629 - AluY SINE Alu -10 301 1 225 0 0 0 chr13 23379740 23379765 -96365133 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2082 125 0 0 chr13 23379765 23380045 -96364853 - AluSx SINE Alu -32 280 1 311 238 30 50 chr13 23381065 23381166 -96363732 + MIR SINE MIR 164 262 0 891 291 95 30 chr13 23381866 23382179 -96362719 - L1ME3 LINE L1 -211 5951 5660 2222 101 7 14 chr13 23382179 23382475 -96362423 + AluSg SINE Alu 1 294 -16 891 291 95 30 chr13 23382475 23382970 -96361928 - L1ME3 LINE L1 -502 5660 5054 2330 100 0 3 chr13 23382970 23383270 -96361628 + AluSg SINE Alu 1 299 -11 891 291 95 30 chr13 23383270 23383574 -96361324 - L1ME3 LINE L1 -1108 5054 4771 449 232 21 0 chr13 23384381 23384451 -96360447 - MER69 DNA AcHobo -2 2524 2457 1745 163 22 0 chr13 23384451 23384728 -96360170 + AluJb SINE Alu 1 283 -29 449 232 21 0 chr13 23384728 23384799 -96360099 - MER69 DNA AcHobo -69 2457 2380 298 183 157 166 chr13 23385163 23385398 -96359500 - MIR SINE MIR -24 238 6 24 0 0 0 chr13 23386436 23386460 -96358438 + AT_rich Low_complexity Low_complexity 1 24 0 327 276 163 44 chr13 23386628 23386831 -96358067 - MIR SINE MIR -1 261 35 1769 172 3 7 chr13 23387713 23388010 -96356888 - AluJb SINE Alu -16 296 1 21 36 0 0 chr13 23388053 23388081 -96356817 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr13 23388245 23388293 -96356605 + AT_rich Low_complexity Low_complexity 1 48 0 1030 194 84 40 chr13 23388541 23388668 -96356230 - MLT1F LTR MaLR -13 529 409 1792 159 77 11 chr13 23388668 23389020 -96355878 - THE1C LTR MaLR 0 375 1 1030 194 84 40 chr13 23389020 23389165 -96355733 - MLT1F LTR MaLR -133 409 245 385 327 155 9 chr13 23390743 23391092 -96353806 - L2 LINE L2 -26 3287 2888 3293 178 98 14 chr13 23393111 23394029 -96350869 - L1MB8 LINE L1 0 6178 5195 560 219 19 0 chr13 23394048 23394153 -96350745 - FLAM_A SINE Alu -35 107 1 443 158 0 20 chr13 23394155 23394256 -96350642 - L1MB8 LINE L1 -944 5202 5104 2823 3 0 0 chr13 23395017 23395322 -96349576 + AluYa5 SINE Alu 1 305 -6 403 236 217 19 chr13 23395871 23396032 -96348866 + L2 LINE L2 3121 3313 0 837 230 177 38 chr13 23396238 23396590 -96348308 - MLT1F LTR MaLR -2 553 98 1714 177 3 29 chr13 23396590 23396763 -96348135 - AluJo SINE Alu -9 303 140 2407 70 0 19 chr13 23396763 23397075 -96347823 - AluY SINE Alu -5 306 1 1714 177 3 29 chr13 23397075 23397212 -96347686 - AluJo SINE Alu -172 140 1 837 230 177 38 chr13 23397212 23397326 -96347572 - MLT1F LTR MaLR -457 98 1 271 300 100 0 chr13 23397676 23397776 -96347122 - MIR SINE MIR -53 209 100 2086 131 14 0 chr13 23398165 23398462 -96346436 - AluSx SINE Alu -11 301 1 2238 104 3 0 chr13 23398462 23398759 -96346139 - AluSg SINE Alu -12 298 1 2263 93 30 3 chr13 23398787 23399088 -96345810 - AluSp SINE Alu -4 309 1 190 237 26 0 chr13 23399371 23399409 -96345489 - L2 LINE L2 -20 3252 3214 3483 105 58 27 chr13 23400264 23400884 -96344014 - L1MA4A LINE L1 -8 6295 5657 3587 176 41 25 chr13 23401201 23401243 -96343655 - L1MB3 LINE L1 -1 6182 6142 2254 84 7 10 chr13 23401243 23401540 -96343358 - AluSx SINE Alu -16 296 1 3587 176 41 25 chr13 23401540 23401884 -96343014 - L1MB3 LINE L1 -41 6142 5805 7728 117 56 5 chr13 23401884 23403121 -96341777 + HSMAR2 DNA Mariner 2 1301 -1 3587 176 41 25 chr13 23403121 23403561 -96341337 - L1MB3 LINE L1 -378 5805 5342 600 198 33 61 chr13 23403573 23403785 -96341113 - L1MB3 LINE L1 -920 5226 5021 331 251 160 76 chr13 23404702 23404977 -96339921 + MER102b DNA MER1_type 17 314 -27 1898 194 98 20 chr13 23405216 23405705 -96339193 - MLT2B3 LTR ERVL -27 527 1 1909 138 81 3 chr13 23406900 23407248 -96337650 - THE1C LTR MaLR 0 375 1 272 266 165 39 chr13 23407542 23407982 -96336916 - L1ME LINE L1 -519 5645 5127 2107 112 49 0 chr13 23407982 23408268 -96336630 - AluSx SINE Alu -12 300 1 272 266 165 39 chr13 23408268 23408324 -96336574 - L1ME LINE L1 -1037 5127 5079 384 218 34 0 chr13 23408413 23408560 -96336338 + (TA)n Simple_repeat Simple_repeat 2 153 0 252 32 0 0 chr13 23408582 23408613 -96336285 + AluSq/x SINE Alu 74 104 -199 23 33 0 0 chr13 23409385 23409415 -96335483 + AT_rich Low_complexity Low_complexity 1 30 0 2478 56 0 34 chr13 23409980 23410302 -96334596 - AluY SINE Alu 0 311 1 222 151 57 38 chr13 23410484 23410537 -96334361 + L2 LINE L2 3207 3260 -12 2098 137 3 0 chr13 23410775 23411075 -96333823 + AluSx SINE Alu 1 301 -11 2073 118 31 3 chr13 23411342 23411629 -96333269 - AluSp SINE Alu -18 295 1 509 203 32 57 chr13 23412402 23412525 -96332373 + FLAM_A SINE Alu 1 120 -13 2400 76 10 0 chr13 23413141 23413442 -96331456 - AluY SINE Alu -7 304 1 211 310 28 0 chr13 23413449 23413520 -96331378 + L2 LINE L2 3229 3301 -12 1792 148 13 23 chr13 23413646 23413949 -96330949 + AluSx SINE Alu 1 300 -12 215 316 146 24 chr13 23414229 23414435 -96330463 + L2 LINE L2 2127 2357 -957 924 276 117 23 chr13 23415398 23415826 -96329072 - MLT1L LTR MaLR -3 612 145 3303 183 35 13 chr13 23415842 23416466 -96328432 - LTR9B LTR ERV1 0 644 7 1337 161 7 14 chr13 23416475 23416725 -96328173 - HUERS-P3 LTR ERV1 -6 8913 7168 740 177 86 11 chr13 23417016 23417202 -96327696 - HUERS-P3 LTR ERV1 -537 4343 4144 3828 188 51 77 chr13 23417203 23418011 -96326887 - HUERS-P3 LTR ERV1 -1934 6985 6198 2634 39 0 3 chr13 23418011 23418320 -96326578 - AluY SINE Alu -3 308 1 3828 188 51 77 chr13 23418320 23418357 -96326541 - HUERS-P3 LTR ERV1 -2721 6198 6162 * 4258 125 8 8 chr13 23418342 23418960 -96325938 - HUERS-P3 LTR ERV1 -3342 5577 4960 789 221 36 0 chr13 23418971 23419111 -96325787 - HUERS-P3 LTR ERV1 -4236 4683 4539 * 1032 127 24 24 chr13 23419104 23419269 -96325629 - HUERS-P3 LTR ERV1 -5635 3284 3120 2328 270 107 38 chr13 23419269 23420600 -96324298 - L1MEc LINE L1 -4428 1968 546 410 323 0 23 chr13 23420600 23420733 -96324165 - L2 LINE L2 -920 2394 2265 * 639 274 39 10 chr13 23420730 23420938 -96323960 + L2 LINE L2 1902 2115 -1199 4452 271 110 38 chr13 23421053 23422335 -96322563 - L1ME LINE L1 -482 5688 4499 1745 162 3 26 chr13 23422335 23422638 -96322260 - AluJb SINE Alu -16 296 1 4452 271 110 38 chr13 23422638 23422878 -96322020 - L1ME LINE L1 -1671 4499 4278 405 0 0 0 chr13 23422878 23422923 -96321975 + (TG)n Simple_repeat Simple_repeat 2 46 0 4452 271 110 38 chr13 23422923 23422956 -96321942 - L1ME LINE L1 -1892 4278 4249 2097 129 10 6 chr13 23422956 23423267 -96321631 + AluSx SINE Alu 1 312 0 4452 271 110 38 chr13 23423267 23424622 -96320276 - L1ME LINE L1 -1921 4249 2565 694 304 36 24 chr13 23424831 23425163 -96319735 - L1M4 LINE L1 -1995 4151 3816 1880 154 22 3 chr13 23425234 23425546 -96319352 - L1PA16 LINE L1 -21 6145 5828 2437 92 0 0 chr13 23425546 23425852 -96319046 - AluSq SINE Alu -7 306 1 2166 116 3 0 chr13 23425855 23426166 -96318732 - AluSx SINE Alu 0 312 1 1720 182 51 22 chr13 23426167 23426580 -96318318 - L1 LINE L1 -2139 4007 3583 771 109 0 36 chr13 23426719 23426829 -96318069 - AluSg SINE Alu -176 134 29 10037 142 23 42 chr13 23426829 23427303 -96317595 - L1PA15-16 LINE L1 -3489 3360 2878 351 0 0 0 chr13 23427303 23427342 -96317556 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2031 131 4 0 chr13 23427342 23427616 -96317282 - AluSc SINE Alu -34 275 1 10037 142 23 42 chr13 23427616 23427892 -96317006 - L1PA15-16 LINE L1 -3970 2879 2599 10639 25 19 118 chr13 23427892 23429429 -96315469 + SVA Other Other 3 1386 0 10037 142 23 42 chr13 23429429 23430757 -96314141 - L1PA15-16 LINE L1 -4250 2599 1305 2494 166 15 0 chr13 23430763 23431167 -96313731 - L1PA15-16 LINE L1 -6437 412 3 335 338 117 25 chr13 23431168 23431485 -96313413 - L1M4 LINE L1 -2322 3824 3479 609 144 33 0 chr13 23431496 23431586 -96313312 + AluSg/x SINE Alu 201 293 -16 698 176 119 6 chr13 23431930 23432089 -96312809 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 23432613 23432736 -96312162 - MER112 DNA MER1_type 0 260 139 432 0 0 0 chr13 23432754 23432802 -96312096 + (TG)n Simple_repeat Simple_repeat 2 49 0 580 255 15 49 chr13 23432852 23433065 -96311833 + MIR3 SINE MIR 13 208 0 1981 118 0 11 chr13 23433124 23433403 -96311495 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 23433410 23433433 -96311465 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 360 0 0 0 chr13 23434056 23434096 -96310802 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 269 115 13 chr13 23434171 23434249 -96310649 - MIR SINE MIR -29 233 148 755 204 62 138 chr13 23434281 23434830 -96310068 - L1MC5 LINE L1 -50 7911 7405 478 239 39 23 chr13 23434830 23434960 -96309938 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 23435238 23435262 -96309636 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr13 23436308 23436338 -96308560 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2013 126 0 0 chr13 23436341 23436618 -96308280 - AluSx SINE Alu -25 287 11 232 337 20 0 chr13 23438381 23438479 -96306419 + L3b LINE CR1 1125 1224 -359 2161 121 26 10 chr13 23438699 23439006 -96305892 - AluSx SINE Alu 0 312 1 587 316 16 5 chr13 23439751 23439938 -96304960 - MER5A DNA MER1_type 0 189 1 198 239 209 0 chr13 23440291 23440358 -96304540 - L2 LINE L2 -1 3312 3232 244 261 153 9 chr13 23440723 23440834 -96304064 + MIR SINE MIR 81 207 -55 759 187 0 0 chr13 23441130 23441253 -96303645 - AluJb SINE Alu 0 312 190 888 198 210 24 chr13 23441255 23441412 -96303486 - AluSp SINE Alu -4 299 173 1460 127 5 9 chr13 23441412 23441632 -96303266 - AluSc SINE Alu -4 305 87 5837 129 47 17 chr13 23441634 23442575 -96302323 + LTR5 LTR ERVK 1 969 0 888 198 210 24 chr13 23442575 23442666 -96302232 - AluSp SINE Alu -130 173 1 2449 92 0 0 chr13 23443406 23443709 -96301189 + AluSc SINE Alu 1 303 -6 2138 125 10 0 chr13 23443761 23444057 -96300841 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr13 23444062 23444085 -96300813 + (CA)n Simple_repeat Simple_repeat 2 24 0 922 116 0 0 chr13 23444707 23444828 -96300070 - FRAM SINE Alu -28 148 28 2943 183 42 34 chr13 23444828 23445441 -96299457 + MER54A LTR ERVL 284 901 0 891 67 117 0 chr13 23447163 23447283 -96297615 - MER85 DNA T2_type -2 137 4 1798 174 3 10 chr13 23448636 23448946 -96295952 - AluJb SINE Alu -4 308 1 12053 206 21 10 chr13 23450096 23453829 -96291069 - L1PA16 LINE L1 -9 6157 2348 2145 126 0 0 chr13 23453831 23454124 -96290774 + AluSg SINE Alu 1 293 -17 2220 130 0 0 chr13 23456984 23457291 -96287607 - AluSx SINE Alu -5 307 1 1691 210 36 0 chr13 23458732 23459061 -96285837 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 23459720 23459741 -96285157 + AT_rich Low_complexity Low_complexity 1 21 0 3333 125 32 51 chr13 23459758 23460348 -96284550 - LTR14B LTR ERVK -13 595 17 417 295 114 18 chr13 23460443 23460609 -96284289 - MER5A DNA MER1_type 0 189 8 239 368 0 11 chr13 23460644 23460731 -96284167 - MER5A DNA MER1_type -31 158 73 2471 176 55 16 chr13 23460869 23461359 -96283539 - LTR22 LTR ERVK 0 509 1 1744 170 0 14 chr13 23461492 23461781 -96283117 + AluJo SINE Alu 1 285 -27 2149 116 0 25 chr13 23461792 23462112 -96282786 + AluSq SINE Alu 1 312 -1 459 271 172 36 chr13 23463283 23463504 -96281394 + MIR SINE MIR 2 252 -10 243 225 231 31 chr13 23463670 23463830 -96281068 - Charlie7 DNA MER1_type 0 2612 2421 337 269 135 7 chr13 23464070 23464211 -96280687 - L1ME LINE L1 -379 5742 5584 789 169 8 0 chr13 23464230 23464354 -96280544 - FLAM_C SINE Alu -7 126 2 2168 123 0 3 chr13 23465094 23465395 -96279503 + AluSx SINE Alu 1 300 -12 1297 135 5 10 chr13 23466644 23466844 -96278054 - AluSg/x SINE Alu -30 280 82 185 352 77 40 chr13 23467320 23467567 -96277331 - L2 LINE L2 -912 2402 2147 843 215 15 80 chr13 23467692 23468017 -96276881 + L1M4 LINE L1 972 1275 -5267 5328 100 28 10 chr13 23468018 23468818 -96276080 + L1PA16 LINE L1 5351 6164 -2 2312 192 61 42 chr13 23468811 23468921 -96275977 + L1M4 LINE L1 1255 1361 -5285 * 1765 159 30 14 chr13 23468921 23469217 -96275681 + AluJo SINE Alu 7 307 -5 2312 192 61 42 chr13 23469217 23469757 -96275141 + L1M4 LINE L1 1361 1918 -4728 1738 177 14 0 chr13 23469760 23470042 -96274856 + AluJb SINE Alu 4 289 -23 2219 112 3 0 chr13 23470389 23470683 -96274215 + AluSp SINE Alu 1 295 -18 1834 137 3 27 chr13 23470862 23471154 -96273744 - LTR22A LTR ERVK 0 458 174 6746 103 9 3 chr13 23471154 23472083 -96272815 - HERVK22 LTR ERVK -3760 3077 2144 6071 132 20 2 chr13 23472083 23473000 -96271898 - HERVK22 LTR ERVK -5902 935 3 3105 121 4 11 chr13 23473002 23473457 -96271441 - LTR22A LTR ERVK 0 458 7 787 194 65 19 chr13 23473503 23473658 -96271240 - AluJo/FRAM SINE Alu -17 295 134 479 195 52 0 chr13 23473661 23473738 -96271160 - AluJ/FLAM SINE Alu -230 82 2 847 156 0 8 chr13 23473843 23473971 -96270927 + FLAM_C SINE Alu 2 128 -5 472 278 60 60 chr13 23474123 23474357 -96270541 - MIR SINE MIR -14 248 15 2532 53 0 22 chr13 23474987 23475305 -96269593 + AluY SINE Alu 1 311 0 223 218 23 35 chr13 23475802 23475889 -96269009 + A-rich Low_complexity Low_complexity 2 87 0 542 120 20 30 chr13 23476980 23477080 -96267818 - L1MA10 LINE L1 -1 6333 6235 252 208 0 0 chr13 23477557 23477610 -96267288 - L1ME3A LINE L1 -11 6159 6107 2129 209 43 9 chr13 23477646 23478092 -96266806 - MER65C LTR ERV1 0 461 1 307 255 0 0 chr13 23478106 23478192 -96266706 - L1ME3 LINE L1 -174 5996 5911 2167 124 0 19 chr13 23478193 23478500 -96266398 + AluSx SINE Alu 1 301 -11 3776 185 54 68 chr13 23478603 23479048 -96265850 - Charlie5 DNA MER1_type -846 1778 1328 1829 156 3 29 chr13 23479048 23479355 -96265543 + AluJb SINE Alu 1 299 -13 3776 185 54 68 chr13 23479355 23479402 -96265496 - Charlie5 DNA MER1_type -1296 1328 1282 1666 172 10 10 chr13 23479402 23479705 -96265193 + AluJb SINE Alu 3 305 -7 3776 185 54 68 chr13 23479705 23480206 -96264692 - Charlie5 DNA MER1_type -1342 1282 798 800 205 0 13 chr13 23480206 23480357 -96264541 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 23480353 23480396 -96264502 - Tigger2 DNA MER2_type -263 2455 2413 * 1575 150 71 11 chr13 23480449 23480729 -96264169 + Tigger2 DNA MER2_type 2422 2718 0 3110 201 84 10 chr13 23480738 23481066 -96263832 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 23481066 23481429 -96263469 + MSTD LTR MaLR 1 396 0 3110 201 84 10 chr13 23481429 23481828 -96263070 - Charlie5 DNA MER1_type -2136 488 9 2181 83 7 13 chr13 23481851 23482151 -96262747 - AluY SINE Alu -13 298 1 2532 53 0 22 chr13 23482815 23483133 -96261765 - AluY SINE Alu 0 311 1 471 270 64 60 chr13 23483763 23483996 -96260902 + MIR SINE MIR 15 248 -14 847 156 0 8 chr13 23484148 23484276 -96260622 - FLAM_C SINE Alu -5 128 2 1791 163 3 29 chr13 23484381 23484687 -96260211 + AluJb SINE Alu 2 299 -13 1517 191 73 102 chr13 23484688 23484734 -96260164 - Charlie5 DNA MER1_type -1295 1329 1283 1666 172 10 10 chr13 23484734 23485037 -96259861 + AluJb SINE Alu 3 305 -7 1517 191 73 102 chr13 23485037 23485538 -96259360 - Charlie5 DNA MER1_type -1341 1283 798 800 205 0 13 chr13 23485538 23485689 -96259209 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 23485685 23485728 -96259170 - Tigger2 DNA MER2_type -253 2465 2423 * 1552 150 71 11 chr13 23485781 23486061 -96258837 + Tigger2 DNA MER2_type 2422 2718 0 3049 202 84 11 chr13 23486070 23486398 -96258500 - Charlie5 DNA MER1_type -1834 790 487 1728 168 118 28 chr13 23486398 23486761 -96258137 + MSTD LTR MaLR 1 396 0 3049 202 84 11 chr13 23486761 23487161 -96257737 - Charlie5 DNA MER1_type -2137 487 9 2237 77 7 13 chr13 23487184 23487484 -96257414 - AluY SINE Alu -13 298 1 481 248 121 27 chr13 23487516 23487811 -96257087 - L1MC4a LINE L1 -1903 5905 5548 248 244 81 24 chr13 23487914 23488037 -96256861 - L1MC4a LINE L1 -2331 5477 5348 1518 240 271 25 chr13 23488202 23488622 -96256276 + L2 LINE L2 1548 1863 -1451 2185 85 21 4 chr13 23488622 23488931 -96255967 - AluSq SINE Alu 0 314 1 1518 240 271 25 chr13 23488931 23489239 -96255659 + L2 LINE L2 1863 2457 -857 257 212 106 97 chr13 23489222 23489335 -96255563 - L2 LINE L2 -2674 640 527 * 206 32 32 0 chr13 23489341 23489372 -96255526 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1984 139 3 7 chr13 23489372 23489661 -96255237 - AluSx SINE Alu -24 288 1 813 150 0 8 chr13 23489663 23489790 -96255108 - AluJb SINE Alu -16 296 171 380 261 369 11 chr13 23489798 23490158 -96254740 - L2 LINE L2 -2793 521 33 403 319 292 0 chr13 23490225 23490386 -96254512 + L2 LINE L2 2973 3086 -227 204 40 0 0 chr13 23490386 23490411 -96254487 + (TG)n Simple_repeat Simple_repeat 2 26 0 403 319 292 0 chr13 23490411 23490509 -96254389 + L2 LINE L2 3086 3308 -5 1015 144 6 35 chr13 23492735 23492909 -96251989 + AluJo SINE Alu 120 288 -24 204 242 22 132 chr13 23493399 23493490 -96251408 - L2 LINE L2 -5 3267 3187 193 303 110 19 chr13 23493481 23493636 -96251262 + L3 LINE CR1 1101 1269 -308 * 604 197 25 8 chr13 23493805 23493927 -96250971 - Charlie1 DNA MER1_type 0 2761 2638 2119 109 7 3 chr13 23493928 23494212 -96250686 + AluSx SINE Alu 1 285 -27 683 219 0 0 chr13 23494753 23494872 -96250026 - FLAM_A SINE Alu -10 123 5 2105 130 7 3 chr13 23494915 23495208 -96249690 - AluSx SINE Alu -18 294 1 706 251 51 122 chr13 23495300 23495826 -96249072 - L1MC4 LINE L1 -1 8041 7553 1523 137 76 54 chr13 23495836 23496136 -96248762 - AluSx SINE Alu 0 306 1 35 63 0 0 chr13 23496818 23496881 -96248017 + AT_rich Low_complexity Low_complexity 1 63 0 233 296 157 0 chr13 23499479 23499587 -96245311 - L1MC/D LINE L1 -1904 5904 5780 389 221 136 14 chr13 23499707 23499847 -96245051 - L1ME4a LINE L1 -6 6115 5959 1405 189 148 84 chr13 23500806 23501245 -96243653 - MLT1C LTR MaLR 0 467 1 251 180 0 33 chr13 23501297 23501358 -96243540 + MER46C DNA MER2_type 83 141 -197 692 254 35 22 chr13 23501573 23501801 -96243097 - L1M4c LINE L1 -6124 260 30 392 192 26 0 chr13 23501816 23501894 -96243004 + MER46C DNA MER2_type 256 335 -3 382 269 37 37 chr13 23502280 23502414 -96242484 - MIR SINE MIR -108 154 21 1987 151 3 0 chr13 23502437 23502742 -96242156 - AluJb SINE Alu -6 306 1 364 281 97 42 chr13 23502974 23503212 -96241686 - L1ME4a LINE L1 -2262 5546 5296 931 268 236 20 chr13 23503304 23503800 -96241098 + L2 LINE L2 2149 2536 -777 2130 80 23 47 chr13 23503800 23504099 -96240799 - AluSp SINE Alu -21 292 1 931 268 236 20 chr13 23504099 23504475 -96240423 + L2 LINE L2 2536 3215 -98 887 167 54 12 chr13 23504477 23504645 -96240253 - AluJo SINE Alu -17 295 121 291 307 0 0 chr13 23504645 23504720 -96240178 + L2 LINE L2 3236 3310 -3 409 234 103 0 chr13 23505481 23505626 -96239272 + L1M4 LINE L1 5021 5180 -966 517 218 84 101 chr13 23506027 23506256 -96238642 - L1MC5 LINE L1 -35 7926 7704 1875 132 7 7 chr13 23506256 23506536 -96238362 + AluSx SINE Alu 1 280 -32 517 218 84 101 chr13 23506536 23506673 -96238225 - L1MC5 LINE L1 -257 7704 7566 243 281 18 0 chr13 23506973 23507030 -96237868 - L2 LINE L2 0 3272 3215 359 224 109 90 chr13 23507030 23507186 -96237712 - L1MC/D LINE L1 -2098 5710 5552 1032 145 70 0 chr13 23507199 23507371 -96237527 - AluSg/x SINE Alu -11 301 118 529 250 30 43 chr13 23507904 23508068 -96236830 - MER3 DNA MER1_type 0 209 48 280 272 152 0 chr13 23508527 23508619 -96236279 - L2 LINE L2 -4 3268 3163 365 267 64 45 chr13 23508619 23508821 -96236077 - L1MC4 LINE L1 -965 7077 6872 2102 72 72 10 chr13 23508833 23509158 -96235740 - AluY SINE Alu 0 343 1 1136 185 37 8 chr13 23511856 23512099 -96232799 + L1MB3 LINE L1 5931 6180 -3 589 231 32 32 chr13 23512291 23512447 -96232451 - L2 LINE L2 -38 3275 3120 604 267 287 22 chr13 23512680 23513730 -96231168 - L2 LINE L2 -537 2777 1450 304 275 180 5 chr13 23514133 23514322 -96230576 - L1MC4 LINE L1 0 8042 7821 284 167 39 13 chr13 23514423 23514501 -96230397 - L2 LINE L2 -2464 850 771 946 170 71 11 chr13 23515386 23515568 -96229330 + MER46A DNA MER2_type 44 236 0 325 304 121 4 chr13 23515841 23516233 -96228665 - L1MC/D LINE L1 -592 5570 5127 698 225 0 0 chr13 23516503 23516632 -96228266 + Tigger1 DNA MER2_type 10 138 -2280 3917 96 19 13 chr13 23516644 23517167 -96227731 - MER1A DNA MER1_type -1 526 1 352 198 86 35 chr13 23517190 23517306 -96227592 - L1M4 LINE L1 -905 5241 5120 444 244 74 15 chr13 23517596 23517731 -96227167 + MIR SINE MIR 49 191 -71 241 229 43 29 chr13 23517970 23518040 -96226858 + MER116 DNA Mariner 1 71 -9 219 301 73 32 chr13 23518091 23518214 -96226684 + L2 LINE L2 2618 2745 -569 227 267 0 0 chr13 23518224 23518284 -96226614 + Charlie7 DNA MER1_type 38 97 -2515 21 36 0 0 chr13 23518725 23518753 -96226145 + AT_rich Low_complexity Low_complexity 1 28 0 562 203 13 51 chr13 23519724 23519882 -96225016 + L1MC5 LINE L1 7059 7210 -751 30 59 0 0 chr13 23521029 23521080 -96223818 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr13 23522035 23522058 -96222840 + AT_rich Low_complexity Low_complexity 1 23 0 642 187 0 0 chr13 23522185 23522640 -96222258 + (TA)n Simple_repeat Simple_repeat 1 455 0 230 232 18 0 chr13 23522753 23522809 -96222089 + MLT1B LTR MaLR 334 390 0 204 97 0 0 chr13 23523229 23523260 -96221638 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 68 7 58 chr13 23523628 23523938 -96220960 + AluY SINE Alu 5 298 -13 317 324 14 0 chr13 23524367 23524488 -96220410 + L1ME LINE L1 321 445 -5625 435 248 101 0 chr13 23524535 23524644 -96220254 + L1ME LINE L1 2667 2786 -3294 717 248 85 30 chr13 23524646 23524977 -96219921 + L1MC4 LINE L1 7689 8037 -5 232 168 65 194 chr13 23525653 23525808 -96219090 + LTR67 LTR ERVL 46 180 -377 2755 176 53 4 chr13 23526001 23526528 -96218370 - L1MB5 LINE L1 -50 6124 5572 413 165 12 12 chr13 23526529 23526614 -96218284 + LTR67 LTR ERVL 471 555 -2 239 328 0 0 chr13 23526616 23526677 -96218221 - MIR SINE MIR -113 149 89 2623 52 3 3 chr13 23527096 23527406 -96217492 - AluY SINE Alu -1 310 1 3327 179 104 20 chr13 23528723 23529434 -96215464 - MER21A LTR ERV1 -160 771 1 287 257 29 0 chr13 23530291 23530361 -96214537 + GA-rich Low_complexity Low_complexity 2 73 0 21 0 0 0 chr13 23531160 23531181 -96213717 + AT_rich Low_complexity Low_complexity 1 21 0 4127 160 48 9 chr13 23531187 23532433 -96212465 - L1MA8 LINE L1 -274 6017 4723 312 221 26 13 chr13 23532921 23532998 -96211900 + MER116 DNA Mariner 3 80 0 320 256 80 89 chr13 23533292 23533424 -96211474 - L1MB5 LINE L1 -847 5299 5167 1966 142 3 7 chr13 23533424 23533720 -96211178 - AluJb SINE Alu -15 297 3 320 256 80 89 chr13 23533720 23533900 -96210998 - L1MB5 LINE L1 -979 5167 4990 704 186 32 0 chr13 23534029 23534153 -96210745 + AluJb SINE Alu 166 293 -19 1493 114 5 9 chr13 23534251 23534462 -96210436 - AluSg/x SINE Alu -17 293 84 2063 135 0 3 chr13 23534462 23534750 -96210148 - AluSg SINE Alu -23 287 1 1110 289 111 18 chr13 23534769 23535245 -96209653 + L1ME3 LINE L1 5094 5667 -495 2219 101 7 14 chr13 23535245 23535541 -96209357 - AluSg SINE Alu -16 294 1 1110 289 111 18 chr13 23535541 23535855 -96209043 + L1ME3 LINE L1 5667 5951 -211 1316 253 88 12 chr13 23537031 23537530 -96207368 - L1MB5 LINE L1 -2337 3809 3273 2140 104 10 7 chr13 23537530 23537828 -96207070 - AluY SINE Alu -12 299 1 859 159 8 0 chr13 23537833 23537965 -96206933 - FLAM_C SINE Alu -10 133 1 263 257 73 28 chr13 23537970 23538079 -96206819 - MLT1F LTR MaLR -428 114 1 264 300 100 0 chr13 23538429 23538529 -96206369 - MIR SINE MIR -53 209 100 1440 112 5 0 chr13 23538918 23539115 -96205783 - AluSg/x SINE Alu -11 299 102 2293 93 3 17 chr13 23541602 23541904 -96202994 + AluSx SINE Alu 1 298 -14 1069 202 99 4 chr13 23542040 23542273 -96202625 + MLT2B3 LTR ERVL 279 533 -21 425 251 160 76 chr13 23542506 23542781 -96202117 - MER102b DNA MER1_type -27 314 17 204 128 0 26 chr13 23593808 23593847 -96151051 + (CGG)n Simple_repeat Simple_repeat 3 40 0 24 32 0 0 chr13 23594076 23594107 -96150791 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 23594453 23594475 -96150423 + GC_rich Low_complexity Low_complexity 1 22 0 200 188 0 0 chr13 23595904 23595936 -96148962 + polypyrimidine Low_complexity Low_complexity 1 32 0 201 39 0 0 chr13 23595941 23595967 -96148931 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 505 161 39 8 chr13 23596393 23596523 -96148375 + GA-rich Low_complexity Low_complexity 1 134 0 382 36 36 0 chr13 23596588 23596644 -96148254 + (ATG)n Simple_repeat Simple_repeat 3 60 0 297 89 0 0 chr13 23597679 23597724 -96147174 + (TG)n Simple_repeat Simple_repeat 2 46 0 225 224 37 19 chr13 23598218 23598325 -96146573 + (TA)n Simple_repeat Simple_repeat 2 110 0 1787 167 17 7 chr13 23599465 23599856 -96145042 - AluSx SINE Alu 0 395 2 1158 192 41 50 chr13 23600972 23601289 -96143609 - MLT1C LTR MaLR -153 314 1 1481 214 18 9 chr13 23602822 23603149 -96141749 - MER70B LTR ERVL -248 330 1 538 268 137 38 chr13 23603974 23604056 -96140842 - MLT1J1 LTR MaLR -5 441 369 2001 199 3 8 chr13 23604056 23604423 -96140475 - MLT1A1 LTR MaLR 0 365 1 538 268 137 38 chr13 23604423 23604770 -96140128 - MLT1J1 LTR MaLR -77 369 1 269 346 98 13 chr13 23606851 23607004 -96137894 - L3 LINE CR1 -95 1482 1317 685 235 82 6 chr13 23607017 23607187 -96137711 - MIR SINE MIR -16 246 64 2079 158 0 0 chr13 23607215 23607525 -96137373 - AluSx SINE Alu -2 310 1 838 267 55 40 chr13 23607548 23608070 -96136828 - MLT1H1 LTR MaLR 0 555 10 472 298 295 50 chr13 23608105 23608853 -96136045 - L3 LINE CR1 -283 1294 316 1841 172 0 17 chr13 23608853 23609149 -96135749 - AluJo SINE Alu -21 291 1 472 298 295 50 chr13 23609149 23609240 -96135658 - L3 LINE CR1 -1261 316 249 1939 149 3 3 chr13 23610629 23610911 -96133987 + AluSx SINE Alu 1 282 -30 228 385 126 13 chr13 23610928 23611229 -96133669 + L3b LINE CR1 1241 1575 -8 1772 179 14 8 chr13 23611877 23612234 -96132664 + MLT1B LTR MaLR 24 382 -8 2192 56 4 4 chr13 23612403 23612670 -96132228 + AluY SINE Alu 39 305 -6 319 316 58 52 chr13 23613871 23614026 -96130872 + L2 LINE L2 3112 3267 -5 1533 116 5 5 chr13 23614158 23614373 -96130525 + AluSp SINE Alu 93 307 -6 3858 171 21 39 chr13 23614390 23615144 -96129754 + MER21B LTR ERV1 101 841 -22 32 0 0 23 chr13 23615338 23615366 -96129532 + AT_rich Low_complexity Low_complexity 1 29 -13 2802 25 0 10 chr13 23615366 23615680 -96129218 + AluY SINE Alu 1 311 0 32 0 0 23 chr13 23615680 23615694 -96129204 + AT_rich Low_complexity Low_complexity 29 42 0 * 184 354 135 5 chr13 23615693 23615885 -96129013 - L2 LINE L2 -480 2834 2618 521 244 60 30 chr13 23617280 23617448 -96127450 + MLT1K LTR MaLR 412 584 -4 192 277 50 34 chr13 23617510 23617629 -96127269 + L2 LINE L2 1360 1480 -1834 1761 174 0 19 chr13 23617830 23618147 -96126751 + AluJo SINE Alu 1 311 -1 426 253 69 90 chr13 23619112 23619345 -96125553 - MLT1K LTR MaLR -4 584 357 824 136 8 0 chr13 23619415 23619547 -96125351 + FLAM_C SINE Alu 1 133 0 28 48 0 0 chr13 23621596 23621638 -96123260 + AT_rich Low_complexity Low_complexity 1 42 0 435 226 61 0 chr13 23623856 23623971 -96120927 - MIR SINE MIR 0 262 141 224 276 0 0 chr13 23623992 23624050 -96120848 + CT-rich Low_complexity Low_complexity 2 59 0 2650 166 6 32 chr13 23624450 23624496 -96120402 - L1MB1 LINE L1 0 6168 6122 2301 100 7 3 chr13 23624496 23624795 -96120103 - AluSx SINE Alu -10 302 3 2650 166 6 32 chr13 23624795 23625254 -96119644 - L1MB1 LINE L1 -46 6122 5676 8830 156 18 39 chr13 23625452 23626212 -96118686 - L1MB1 LINE L1 -769 5377 4603 2179 110 21 0 chr13 23626212 23626502 -96118396 - AluSx SINE Alu -16 296 1 8830 156 18 39 chr13 23626502 23627453 -96117445 - L1MB1 LINE L1 -1543 4603 3701 322 143 16 16 chr13 23627605 23627668 -96117230 - AluS SINE Alu -237 63 1 920 264 60 23 chr13 23628483 23628846 -96116052 + L1ME2 LINE L1 5785 6158 -6 363 309 47 7 chr13 23629155 23629304 -96115594 - MIR SINE MIR -43 219 65 568 135 0 10 chr13 23629860 23629956 -96114942 - FRAM SINE Alu -11 165 71 488 230 0 7 chr13 23629958 23630110 -96114788 + (TG)n Simple_repeat Simple_repeat 2 152 0 477 304 47 16 chr13 23630438 23630629 -96114269 - MIR SINE MIR -1 261 65 258 274 266 0 chr13 23630839 23630952 -96113946 - L2 LINE L2 -4 3268 3126 830 283 94 11 chr13 23632243 23632444 -96112454 - L2 LINE L2 -4 3309 3126 288 0 0 0 chr13 23632444 23632476 -96112422 + (TG)n Simple_repeat Simple_repeat 2 33 0 830 283 94 11 chr13 23632476 23632634 -96112264 - L2 LINE L2 -187 3126 2920 2108 166 5 27 chr13 23632697 23632878 -96112020 + MLT1A1 LTR MaLR 1 171 -194 2660 108 14 0 chr13 23632878 23633248 -96111650 - THE1C LTR MaLR 0 375 1 2108 166 5 27 chr13 23633248 23633439 -96111459 + MLT1A1 LTR MaLR 171 365 0 228 389 87 0 chr13 23634524 23634650 -96110248 + L2 LINE L2 3136 3272 0 1321 226 129 12 chr13 23634701 23635103 -96109795 + LTR2 LTR ERV1 1 449 0 21 0 0 0 chr13 23636159 23636180 -96108718 + AT_rich Low_complexity Low_complexity 1 21 0 2324 98 3 0 chr13 23636330 23636625 -96108273 - AluSq SINE Alu -15 298 3 258 212 45 15 chr13 23636647 23636713 -96108185 + L2 LINE L2 3246 3313 0 297 0 0 0 chr13 23637092 23637125 -96107773 + (TG)n Simple_repeat Simple_repeat 2 34 0 2317 78 0 0 chr13 23637125 23637401 -96107497 - AluY SINE Alu -20 291 16 3468 179 48 8 chr13 23638392 23639045 -96105853 - LTR58 LTR ERV1 0 679 1 726 227 164 54 chr13 23639081 23639416 -96105482 + MER93b LTR ERV1 2 373 0 1154 189 129 63 chr13 23640910 23641196 -96103702 + AluJo SINE Alu 8 312 0 1374 146 5 5 chr13 23641427 23641639 -96103259 + AluSx SINE Alu 1 212 -100 2143 104 0 4 chr13 23641669 23641990 -96102908 + AluSc SINE Alu 1 320 0 183 261 109 11 chr13 23642128 23642220 -96102678 - MIR SINE MIR -70 192 92 284 280 100 13 chr13 23642540 23642690 -96102208 + L2 LINE L2 3111 3273 -40 295 170 0 4 chr13 23643030 23643088 -96101810 + FRAM/FAM SINE Alu 9 51 -124 10655 190 12 12 chr13 23643197 23644954 -96099944 - L1PB1 LINE L1 0 6151 4385 216 0 0 0 chr13 23644954 23644978 -96099920 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 10655 190 12 12 chr13 23644978 23646437 -96098461 - L1PB1 LINE L1 -1766 4385 2927 2252 92 7 26 chr13 23646438 23646743 -96098155 - AluSc SINE Alu -10 299 1 787 170 0 99 chr13 23647132 23647344 -96097554 - L1MA4 LINE L1 0 6300 6110 1549 190 0 32 chr13 23647555 23647839 -96097059 + AluJo SINE Alu 1 275 -37 189 0 0 0 chr13 23647842 23647863 -96097035 + (TC)n Simple_repeat Simple_repeat 2 22 0 195 184 0 0 chr13 23647863 23647901 -96096997 + (TA)n Simple_repeat Simple_repeat 2 39 0 228 67 0 0 chr13 23647901 23647931 -96096967 + (CA)n Simple_repeat Simple_repeat 2 31 0 210 351 18 9 chr13 23648213 23648324 -96096574 + L2 LINE L2 2948 3059 -213 2007 102 56 30 chr13 23648697 23649000 -96095898 + AluY SINE Alu 1 311 0 1870 153 13 3 chr13 23649037 23649344 -96095554 + AluJb SINE Alu 1 310 -2 2181 152 8 0 chr13 23649600 23649956 -96094942 - L1MA5A LINE L1 -40 6257 5899 1205 144 24 5 chr13 23649956 23650164 -96094734 - LTR49 LTR ERV1 -383 212 1 282 242 74 21 chr13 23650512 23650607 -96094291 + LTR16A1 LTR ERVL 179 278 -179 2484 100 73 36 chr13 23650643 23651054 -96093844 + MSTC LTR MaLR 3 428 0 1145 264 105 87 chr13 23652628 23653322 -96091576 - MER21B LTR ERV1 -149 714 8 183 139 0 0 chr13 23655586 23655622 -96089276 + (CTG)n Simple_repeat Simple_repeat 1 36 0 205 271 0 0 chr13 23656790 23656838 -96088060 - L2 LINE L2 -4 3268 3221 221 211 88 0 chr13 23657037 23657094 -96087804 - MIR SINE MIR -109 153 92 2762 242 49 73 chr13 23657556 23658975 -96085923 + L1M1 LINE L1 18 2332 -5233 870 184 0 0 chr13 23659309 23659450 -96085448 + FRAM SINE Alu 10 150 -26 387 0 0 0 chr13 23659477 23659520 -96085378 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr13 23659519 23659542 -96085356 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 305 264 107 8 chr13 23660559 23660680 -96084218 - MIR3 SINE MIR -18 190 58 813 145 34 101 chr13 23660797 23661004 -96083894 - MER34C LTR ERV1 -33 552 360 619 164 10 0 chr13 23662188 23662292 -96082606 + FLAM_C SINE Alu 1 105 -38 3354 137 29 18 chr13 23662292 23662840 -96082058 - MER41C LTR ERV1 0 554 1 275 189 0 19 chr13 23662847 23662900 -96081998 + MER34B LTR ERV1 514 565 0 2557 212 18 21 chr13 23663313 23663917 -96080981 + L1MB7 LINE L1 4448 5049 -1097 246 157 118 0 chr13 23663916 23663967 -96080931 - L1M4 LINE L1 -1021 5125 5069 * 2696 194 50 6 chr13 23663979 23664747 -96080151 + L1MB7 LINE L1 5069 5904 -280 * 5649 113 14 3 chr13 23664744 23665636 -96079262 + L1MA3 LINE L1 5186 6087 -218 200 216 21 31 chr13 23666103 23666200 -96078698 + (TA)n Simple_repeat Simple_repeat 2 97 0 2331 95 10 0 chr13 23666422 23666726 -96078172 + AluSg SINE Alu 1 307 -3 501 62 0 0 chr13 23669117 23669182 -96075716 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 2364 83 3 26 chr13 23669184 23669497 -96075401 - AluY SINE Alu -5 306 1 2202 118 7 0 chr13 23669521 23669826 -96075072 - AluSx SINE Alu -5 307 1 360 257 208 20 chr13 23670467 23670669 -96074229 - L2 LINE L2 -526 2788 2549 554 197 171 0 chr13 23672401 23672553 -96072345 + MER45A DNA AcHobo 1 178 0 264 100 0 0 chr13 23672963 23673003 -96071895 + (T)n Simple_repeat Simple_repeat 1 40 0 1932 113 28 10 chr13 23673612 23673903 -96070995 - AluSx SINE Alu -16 296 1 562 248 9 0 chr13 23674226 23674335 -96070563 + MER81 DNA DNA 5 114 0 419 176 0 0 chr13 23674393 23674461 -96070437 + AluJ/FLAM SINE Alu 2 69 -243 348 318 85 31 chr13 23675977 23676106 -96068792 + L2 LINE L2 3137 3272 0 1103 165 0 6 chr13 23676270 23676446 -96068452 + AluJo SINE Alu 1 175 -137 3188 127 6 27 chr13 23676447 23676960 -96067938 + L1MC1 LINE L1 5375 5876 -457 21 36 0 0 chr13 23677511 23677539 -96067359 + AT_rich Low_complexity Low_complexity 1 28 0 2176 71 46 4 chr13 23677543 23677824 -96067074 - AluY SINE Alu -18 293 1 304 285 122 14 chr13 23677924 23678025 -96066873 + L1MC/D LINE L1 4076 4165 -1981 2035 214 13 5 chr13 23678025 23678418 -96066480 - MSTD LTR MaLR 0 396 1 304 285 122 14 chr13 23678418 23678537 -96066361 + L1MC/D LINE L1 4165 4320 -1826 2142 125 10 0 chr13 23678541 23678837 -96066061 + AluSx SINE Alu 1 299 -13 1860 287 95 34 chr13 23678944 23679478 -96065420 + L1M3c LINE L1 1046 1546 -4850 1939 170 0 0 chr13 23679478 23679767 -96065131 + AluJb SINE Alu 1 289 -23 1860 287 95 34 chr13 23679767 23679862 -96065036 + L1M3c LINE L1 1546 1634 -4762 2547 159 11 23 chr13 23679862 23680301 -96064597 - Tigger2a DNA MER2_type 0 434 1 1860 287 95 34 chr13 23680301 23680756 -96064142 + L1M3c LINE L1 1634 2060 -4336 2331 108 0 0 chr13 23680756 23681053 -96063845 - AluSx SINE Alu -15 297 1 1860 287 95 34 chr13 23681053 23681393 -96063505 + L1M3c LINE L1 2060 2519 -3877 5763 244 81 30 chr13 23681394 23681821 -96063077 + L1ME1 LINE L1 3100 3504 -2662 2262 90 0 50 chr13 23681821 23682142 -96062756 - AluSg SINE Alu -5 305 1 5763 244 81 30 chr13 23682142 23683214 -96061684 + L1ME1 LINE L1 3504 4519 -1647 2231 119 0 6 chr13 23683214 23683547 -96061351 + AluSg SINE Alu 1 310 0 5763 244 81 30 chr13 23683547 23684891 -96060007 + L1ME1 LINE L1 4519 6103 -63 2637 55 0 0 chr13 23684891 23685201 -96059697 - AluY SINE Alu -1 310 1 5763 244 81 30 chr13 23685201 23685269 -96059629 + L1ME1 LINE L1 6103 6166 0 750 292 97 39 chr13 23685357 23685843 -96059055 + LTR33 LTR ERVL 8 521 0 228 312 18 9 chr13 23685933 23686042 -96058856 + L1P LINE L1 4482 4591 -1555 247 286 98 31 chr13 23686216 23686440 -96058458 + L1MC/D LINE L1 4812 5050 -1096 1855 167 74 24 chr13 23686469 23686846 -96058052 - MSTD LTR MaLR 0 396 1 1136 195 80 58 chr13 23686869 23687182 -96057716 + MER2 DNA MER2_type 1 320 -25 1323 264 47 10 chr13 23687288 23687697 -96057201 + L1MC/D LINE L1 5270 5691 -747 362 245 64 107 chr13 23688314 23688547 -96056351 + MER65-int LTR ERV1 81 303 -4568 238 243 49 60 chr13 23688728 23688913 -96055985 - MER54A LTR ERVL -618 283 101 272 198 0 88 chr13 23688913 23689004 -96055894 + MER65-int LTR ERV1 656 738 -4133 1785 179 3 7 chr13 23690016 23690312 -96054586 + AluJo SINE Alu 1 295 -17 5134 112 11 3 chr13 23690425 23691178 -96053720 - L1PA13 LINE L1 0 6163 5405 1707 178 7 13 chr13 23692556 23692854 -96052044 + AluJo SINE Alu 1 296 -16 2153 102 0 7 chr13 23693998 23694307 -96050591 + AluSx SINE Alu 1 307 0 1125 168 0 5 chr13 23694318 23694508 -96050390 + L1PB4 LINE L1 5966 6154 -2 2143 100 42 0 chr13 23694899 23695188 -96049710 + AluSx SINE Alu 1 301 -11 6223 85 11 6 chr13 23695727 23696574 -96048324 - L1PA11 LINE L1 -1 6173 5323 1886 122 16 56 chr13 23697080 23697384 -96047514 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr13 23697384 23697405 -96047493 + AT_rich Low_complexity Low_complexity 1 21 0 2051 131 0 10 chr13 23697999 23698305 -96046593 + AluSx SINE Alu 1 303 -9 2443 85 7 3 chr13 23698561 23698868 -96046030 + AluSq SINE Alu 1 308 -5 189 107 0 0 chr13 23700180 23700208 -96044690 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 45 0 0 0 chr13 23700587 23700632 -96044266 + AT_rich Low_complexity Low_complexity 1 45 0 1920 116 49 0 chr13 23700641 23700908 -96043990 + AluSx SINE Alu 1 280 -32 204 97 0 0 chr13 23700908 23700939 -96043959 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 243 222 0 0 chr13 23700988 23701042 -96043856 + L2 LINE L2 3213 3266 -6 2533 132 89 22 chr13 23701649 23702097 -96042801 + LTR64 LTR ERVK 1 478 -80 927 118 0 29 chr13 23702120 23702256 -96042642 - FLAM_C SINE Alu -1 132 1 1841 171 0 0 chr13 23702297 23702583 -96042315 - AluJb SINE Alu -26 286 1 9911 172 106 11 chr13 23702768 23705230 -96039668 + L1PBa LINE L1 647 3345 -3517 436 241 61 30 chr13 23705418 23705671 -96039227 + MLT1L LTR MaLR 312 611 -4 805 261 31 52 chr13 23706434 23706821 -96038077 - L1MC5 LINE L1 -36 7925 7547 1329 219 28 100 chr13 23706873 23707059 -96037839 - L1MC5 LINE L1 -729 7232 7034 2093 110 7 0 chr13 23707059 23707372 -96037526 + AluSx SINE Alu 1 315 0 1329 219 28 100 chr13 23707372 23707764 -96037134 - L1MC5 LINE L1 -927 7034 6695 349 275 53 8 chr13 23707904 23708035 -96036863 + MIR SINE MIR 67 203 -59 23 0 0 0 chr13 23708882 23708905 -96035993 + AT_rich Low_complexity Low_complexity 1 23 0 233 100 0 0 chr13 23709243 23709273 -96035625 - MLT2D LTR ERVL -5 510 481 1665 140 0 98 chr13 23709343 23709650 -96035248 + AluJb SINE Alu 1 277 -35 1693 148 98 0 chr13 23709681 23709999 -96034899 - MLT2D LTR ERVL -65 349 1 503 245 104 7 chr13 23710566 23710776 -96034122 + MLT1H LTR MaLR 1 281 -268 312 262 71 0 chr13 23710993 23711077 -96033821 + MLT1H LTR MaLR 466 555 0 2179 109 13 10 chr13 23711632 23711936 -96032962 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr13 23712569 23712591 -96032307 + AT_rich Low_complexity Low_complexity 1 22 0 1752 149 10 7 chr13 23712631 23712933 -96031965 - L1MC1 LINE L1 -1 6332 6030 1348 153 48 34 chr13 23713079 23713373 -96031525 + L1MB7 LINE L1 5887 6184 0 516 243 181 35 chr13 23713932 23714158 -96030740 + MLT1L LTR MaLR 8 266 -349 2354 252 40 43 chr13 23714643 23715326 -96029572 - L1ME3 LINE L1 -41 6121 5441 2258 122 3 0 chr13 23715326 23715637 -96029261 - AluSx SINE Alu 0 312 1 2354 252 40 43 chr13 23715637 23716131 -96028767 - L1ME3 LINE L1 -721 5441 4947 1379 239 46 46 chr13 23716157 23716356 -96028542 - L1ME3 LINE L1 -1279 4867 4669 2344 110 0 0 chr13 23716356 23716666 -96028232 - AluSx SINE Alu -2 310 1 1379 239 46 46 chr13 23716666 23716964 -96027934 - L1ME3 LINE L1 -1476 4670 4370 1696 225 75 58 chr13 23717005 23717114 -96027784 - L1ME1 LINE L1 -5 6161 6055 1865 111 12 0 chr13 23717114 23717357 -96027541 + AluSx SINE Alu 38 283 -29 184 80 0 0 chr13 23717357 23717382 -96027516 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 1696 225 75 58 chr13 23717382 23717857 -96027041 - L1ME1 LINE L1 -111 6055 5566 237 303 17 17 chr13 23717862 23717981 -96026917 - L1ME3 LINE L1 -1755 4391 4273 1256 162 81 0 chr13 23718245 23718479 -96026419 - AluSg SINE Alu -57 253 1 700 240 98 62 chr13 23720545 23720882 -96024016 + MLT1L LTR MaLR 1 349 -266 363 132 0 0 chr13 23721415 23721483 -96023415 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1562 168 81 0 chr13 23721500 23721785 -96023113 - AluJo SINE Alu -4 308 1 2158 100 0 0 chr13 23722244 23722533 -96022365 - AluSg SINE Alu -16 294 6 2079 74 14 18 chr13 23723423 23723708 -96021190 + AluY SINE Alu 1 284 -27 270 56 0 0 chr13 23724523 23724559 -96020339 + (TA)n Simple_repeat Simple_repeat 2 37 0 844 257 141 27 chr13 23725302 23725714 -96019184 + MLT1C LTR MaLR 1 459 -8 235 397 7 0 chr13 23725730 23725866 -96019032 + L2 LINE L2 2232 2368 -946 2312 92 0 0 chr13 23725915 23726219 -96018679 + AluSq SINE Alu 1 304 -9 2513 43 0 0 chr13 23726410 23726711 -96018187 + AluY SINE Alu 1 301 -10 391 165 70 52 chr13 23727005 23727120 -96017778 - L1PA16 LINE L1 0 6166 6050 1065 197 19 57 chr13 23727312 23727601 -96017297 + L1P5 LINE L1 5441 5724 -430 708 121 0 0 chr13 23727702 23727801 -96017097 - MLT1A1 LTR MaLR -2 363 265 598 89 89 0 chr13 23727801 23727891 -96017007 + MER4A LTR ERV1 1 98 -566 1712 139 14 75 chr13 23727891 23728259 -96016639 + MER4A LTR ERV1 261 664 0 1208 242 11 0 chr13 23728259 23728523 -96016375 - MLT1A1 LTR MaLR -97 268 2 894 302 114 16 chr13 23729054 23729538 -96015360 + L1MC4a LINE L1 5296 5826 -1982 * 2388 145 17 2 chr13 23729535 23729943 -96014955 + L1MB3 LINE L1 5725 6138 -45 1961 124 0 10 chr13 23729946 23730244 -96014654 + AluSx SINE Alu 1 295 -17 2029 105 7 0 chr13 23730743 23731028 -96013870 + AluSx SINE Alu 1 287 -25 382 216 27 99 chr13 23731752 23731863 -96013035 - MER20 DNA MER1_type -116 103 1 389 273 116 8 chr13 23732109 23732230 -96012668 - MIR SINE MIR -79 183 50 565 231 37 15 chr13 23733254 23733388 -96011510 - MIR SINE MIR -77 185 49 2305 58 3 0 chr13 23733655 23733946 -96010952 - AluY SINE Alu 0 311 20 261 0 0 0 chr13 23734672 23734701 -96010197 + (TG)n Simple_repeat Simple_repeat 2 30 0 2189 106 0 3 chr13 23734750 23735053 -96009845 + AluSx SINE Alu 1 302 -10 220 347 0 13 chr13 23735077 23735152 -96009746 - L2 LINE L2 -36 3236 3163 211 196 0 39 chr13 23735179 23735230 -96009668 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 1455 167 0 4 chr13 23735601 23735852 -96009046 + AluSx SINE Alu 50 299 -13 1960 149 0 0 chr13 23736054 23736362 -96008536 - AluSx SINE Alu -4 308 1 700 282 25 0 chr13 23737775 23737938 -96006960 - MIR SINE MIR -49 213 47 186 322 17 43 chr13 23738838 23738892 -96006006 - L2 LINE L2 -38 3234 3180 2240 104 3 0 chr13 23738892 23739201 -96005697 - AluSp SINE Alu -3 310 1 186 322 17 43 chr13 23739201 23739261 -96005637 - L2 LINE L2 -92 3180 3123 283 267 91 3 chr13 23739363 23739467 -96005431 - Charlie8 DNA MER1_type -2290 127 2 25 31 0 0 chr13 23739634 23739666 -96005232 + AT_rich Low_complexity Low_complexity 1 32 0 289 113 0 29 chr13 23739666 23739731 -96005167 - Alu SINE Alu -19 283 247 1206 164 136 82 chr13 23739731 23739747 -96005151 - MSTD LTR MaLR -62 334 320 1886 190 64 11 chr13 23739747 23740121 -96004777 + MSTD LTR MaLR 3 396 0 1206 164 136 82 chr13 23740121 23740421 -96004477 - MSTD LTR MaLR -76 320 1 852 220 47 19 chr13 23740504 23740718 -96004180 + MIR SINE MIR 43 262 0 270 360 0 0 chr13 23741013 23741102 -96003796 - MER5A DNA MER1_type -83 106 18 218 274 68 27 chr13 23743403 23743476 -96001422 + MIR SINE MIR 127 202 -60 1972 103 0 62 chr13 23743504 23743825 -96001073 + AluSx SINE Alu 1 301 -11 298 350 13 38 chr13 23744263 23744420 -96000478 + MIR SINE MIR 50 202 -60 197 307 71 24 chr13 23744522 23744649 -96000249 + MIR SINE MIR 60 192 -70 972 165 6 6 chr13 23744839 23745015 -95999883 - FRAM SINE Alu 0 176 1 689 137 24 8 chr13 23746648 23746772 -95998126 + MER31B LTR ERV1 1 126 -340 * 718 133 147 7 chr13 23746749 23746899 -95997999 + MER31B LTR ERV1 243 413 -53 1970 153 80 28 chr13 23746909 23747293 -95997605 + MSTB1 LTR MaLR 7 410 -22 1680 95 4 9 chr13 23747293 23747524 -95997374 - MER30 DNA MER1_type 0 230 1 320 155 28 14 chr13 23747556 23747627 -95997271 + MER31B LTR ERV1 395 466 0 466 235 120 54 chr13 23747635 23748128 -95996770 - MLT1H1 LTR MaLR -29 566 4 1844 117 32 14 chr13 23748182 23748485 -95996413 + AluSx SINE Alu 5 312 0 510 198 18 0 chr13 23748587 23748698 -95996200 + L1MD3 LINE L1 6919 7031 -964 944 162 65 142 chr13 23748810 23749162 -95995736 + MER51C LTR ERV1 326 640 0 299 235 0 0 chr13 23749175 23749243 -95995655 + L1MC3 LINE L1 7029 7096 -689 325 265 31 10 chr13 23749244 23749342 -95995556 + MLT1F1 LTR MaLR 35 134 -433 2463 147 46 31 chr13 23749345 23749754 -95995144 + L1MC3 LINE L1 7205 7623 -162 2463 63 0 0 chr13 23749754 23750056 -95994842 + AluY SINE Alu 1 302 -9 2463 147 46 31 chr13 23750056 23750101 -95994797 + L1MC3 LINE L1 7623 7666 -119 1359 189 71 53 chr13 23750125 23750330 -95994568 - MER2 DNA MER2_type 0 344 129 1965 125 0 10 chr13 23750330 23750635 -95994263 + AluSx SINE Alu 11 312 0 1359 189 71 53 chr13 23750635 23750767 -95994131 - MER2 DNA MER2_type -215 129 1 2362 83 13 0 chr13 23804103 23804405 -95940493 + AluSq SINE Alu 2 307 -6 32 0 0 23 chr13 23806472 23806486 -95938412 + AT_rich Low_complexity Low_complexity 1 14 -28 1742 101 22 14 chr13 23806486 23806762 -95938136 - L1PB1 LINE L1 0 6151 5874 32 0 0 23 chr13 23806762 23806790 -95938108 + AT_rich Low_complexity Low_complexity 14 42 0 618 13 0 0 chr13 23806790 23806865 -95938033 - L1PA3 LINE L1 -4 6151 6077 335 87 48 164 chr13 23806865 23806929 -95937969 - L1PB1 LINE L1 -265 5886 5837 1801 117 59 38 chr13 23806929 23807219 -95937679 - AluSq SINE Alu -17 296 1 335 87 48 164 chr13 23807219 23807258 -95937640 - L1PB1 LINE L1 -314 5837 5795 342 67 0 0 chr13 23807259 23807304 -95937594 + (TA)n Simple_repeat Simple_repeat 2 46 0 219 69 0 0 chr13 23807306 23807335 -95937563 + (CA)n Simple_repeat Simple_repeat 1 29 0 245 182 18 0 chr13 23807444 23807499 -95937399 - L1ME LINE L1 -539 5582 5527 359 251 204 42 chr13 23807724 23807891 -95937007 + MIR SINE MIR 48 241 -21 543 322 94 5 chr13 23808527 23808729 -95936169 - MIR SINE MIR -12 250 31 606 246 104 38 chr13 23809635 23809846 -95935052 - MIR SINE MIR -21 241 17 2459 87 3 0 chr13 23809901 23810210 -95934688 + AluSp SINE Alu 1 310 -3 1596 110 200 0 chr13 23810404 23810704 -95934194 - MER46B DNA MER2_type -1 235 1 542 226 161 5 chr13 23810709 23810908 -95933990 - MLT1J LTR MaLR -246 265 36 390 219 85 37 chr13 23811023 23811187 -95933711 - L1MEd LINE L1 -5946 173 2 330 188 257 0 chr13 23811519 23811620 -95933278 + Charlie5 DNA MER1_type 1 127 -2485 * 924 231 89 0 chr13 23811617 23811916 -95932982 + Charlie5 DNA MER1_type 2234 2572 -52 676 207 8 8 chr13 23811916 23812037 -95932861 - FLAM_A SINE Alu -12 121 1 924 231 89 0 chr13 23812037 23812096 -95932802 + Charlie5 DNA MER1_type 2572 2624 0 657 289 92 9 chr13 23812773 23812991 -95931907 + MIR SINE MIR 26 261 -1 2826 164 68 83 chr13 23813450 23813590 -95931308 - L1MB7 LINE L1 -5 6179 6038 1588 132 8 0 chr13 23813590 23813825 -95931073 + AluSx SINE Alu 57 293 -19 1654 161 20 24 chr13 23813825 23814117 -95930781 - AluJo SINE Alu -21 291 1 2826 164 68 83 chr13 23814117 23814385 -95930513 - L1MB7 LINE L1 -145 6039 5769 2042 136 3 3 chr13 23814385 23814693 -95930205 - AluSx SINE Alu -1 311 4 2826 164 68 83 chr13 23814693 23815114 -95929784 - L1MB7 LINE L1 -415 5769 5360 676 293 64 69 chr13 23815153 23815251 -95929647 - L2 LINE L2 0 3313 3216 2050 149 0 0 chr13 23815251 23815559 -95929339 + AluJb SINE Alu 1 308 -4 676 293 64 69 chr13 23815559 23816057 -95928841 - L2 LINE L2 -97 3216 2621 1270 259 143 18 chr13 23816125 23816193 -95928705 - L2 LINE L2 -658 2656 2598 3131 161 9 33 chr13 23816193 23816637 -95928261 - MER41D LTR ERV1 0 557 129 2353 103 0 0 chr13 23816637 23816937 -95927961 - AluSx SINE Alu -12 300 1 3131 161 9 33 chr13 23816937 23817063 -95927835 - MER41D LTR ERV1 -428 129 1 1270 259 143 18 chr13 23817063 23817538 -95927360 - L2 LINE L2 -716 2598 2045 378 284 57 7 chr13 23817684 23817825 -95927073 + L1ME LINE L1 44 191 -5879 248 229 0 0 chr13 23817826 23817896 -95927002 + T-rich Low_complexity Low_complexity 1 70 0 1717 176 3 22 chr13 23817986 23818304 -95926594 + AluJb SINE Alu 1 312 0 1067 267 115 34 chr13 23818391 23818900 -95925998 + L1ME LINE L1 348 918 -5152 2217 92 3 0 chr13 23818900 23819183 -95925715 + AluSq SINE Alu 1 310 0 195 0 39 0 chr13 23819183 23819209 -95925689 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1067 267 115 34 chr13 23819209 23819315 -95925583 + L1ME LINE L1 918 1014 -5056 23 0 0 0 chr13 23819456 23819479 -95925419 + AT_rich Low_complexity Low_complexity 1 23 0 1416 269 77 32 chr13 23819860 23820702 -95924196 + L1ME LINE L1 988 1975 -4171 2407 90 7 0 chr13 23820702 23821003 -95923895 + AluSx SINE Alu 1 303 -9 1416 269 77 32 chr13 23821003 23821023 -95923875 + L1ME LINE L1 1975 1993 -4153 625 277 219 38 chr13 23821024 23821272 -95923626 - L2 LINE L2 -1782 1532 1330 2538 56 7 13 chr13 23821272 23821577 -95923321 - AluY SINE Alu -8 303 1 625 277 219 38 chr13 23821577 23821930 -95922968 - L2 LINE L2 -1984 1330 822 232 270 16 0 chr13 23821930 23821950 -95922948 + MER3 DNA MER1_type 27 47 -162 575 196 0 0 chr13 23821950 23822057 -95922841 - MER3 DNA MER1_type 0 209 103 2154 128 0 0 chr13 23822057 23822355 -95922543 - AluSq SINE Alu -14 299 2 503 262 40 0 chr13 23822781 23822930 -95921968 - MER112 DNA MER1_type -104 156 2 342 284 74 14 chr13 23822980 23823128 -95921770 - L1ME LINE L1 -616 5550 5394 1938 187 68 34 chr13 23823147 23823591 -95921307 + LTR2B LTR ERV1 32 490 0 436 244 78 125 chr13 23823593 23824083 -95920815 - L1ME LINE L1 -748 5398 4958 2078 119 3 0 chr13 23824083 23824411 -95920487 - AluSq SINE Alu 0 329 1 436 244 78 125 chr13 23824411 23824728 -95920170 - L1ME LINE L1 -1188 4958 4628 606 196 22 14 chr13 23824764 23824902 -95919996 - MER4C LTR ERV1 0 465 327 14696 48 2 0 chr13 23824903 23827530 -95917368 + L1PA5 LINE L1 3588 6216 0 631 278 14 43 chr13 23827545 23827653 -95917245 - L1ME LINE L1 -1842 4304 4194 2294 108 7 0 chr13 23827653 23827949 -95916949 + AluSp SINE Alu 1 298 -15 631 278 14 43 chr13 23827949 23828117 -95916781 - L1ME LINE L1 -1952 4194 4036 310 299 0 0 chr13 23828127 23828214 -95916684 - L1MC4 LINE L1 -1339 6703 6617 1908 130 17 23 chr13 23828214 23828513 -95916385 - AluSc SINE Alu -12 297 1 420 287 72 34 chr13 23828526 23828763 -95916135 - L1ME LINE L1 -2130 4016 3771 704 269 58 42 chr13 23828792 23829219 -95915679 - L1ME LINE L1 -2899 3247 2814 2230 117 0 0 chr13 23829759 23830059 -95914839 - AluSx SINE Alu -12 300 1 1302 191 41 32 chr13 23830059 23830404 -95914494 - L1M4 LINE L1 -1100 5046 4699 1123 241 119 17 chr13 23830535 23830879 -95914019 + MLT1G1 LTR MaLR 3 381 -214 2456 85 0 3 chr13 23831111 23831417 -95913481 + AluSc SINE Alu 1 305 -4 1842 176 0 0 chr13 23831717 23832006 -95912892 + AluJb SINE Alu 4 292 -20 410 310 54 47 chr13 23832082 23832340 -95912558 + L3b LINE CR1 1190 1449 -134 195 42 0 0 chr13 23833794 23833818 -95911080 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 691 116 0 0 chr13 23833822 23833917 -95910981 - AluSg/x SINE Alu -35 277 183 2304 93 7 0 chr13 23834017 23834318 -95910580 + AluSq SINE Alu 11 313 0 194 138 0 0 chr13 23834640 23834669 -95910229 + MIR SINE MIR 86 114 -94 513 136 0 0 chr13 23834693 23834796 -95910102 + (TG)n Simple_repeat Simple_repeat 1 103 0 25 75 0 0 chr13 23835285 23835338 -95909560 + GC_rich Low_complexity Low_complexity 1 53 0 219 175 0 35 chr13 23835626 23835683 -95909215 + (CGGGG)n Simple_repeat Simple_repeat 4 58 0 339 203 0 0 chr13 23836194 23836268 -95908630 + (CA)n Simple_repeat Simple_repeat 2 75 0 773 275 102 20 chr13 23836757 23837200 -95907698 - L2 LINE L2 -612 2702 2224 636 190 41 24 chr13 23837200 23837371 -95907527 + MER45A DNA AcHobo 1 174 -4 1008 244 81 21 chr13 23837395 23837830 -95907068 - L2 LINE L2 -1154 2160 1700 309 262 83 14 chr13 23837843 23838052 -95906846 - L2 LINE L2 -2761 553 240 355 230 110 10 chr13 23838536 23838636 -95906262 - L2 LINE L2 -13 3300 3191 1313 92 6 6 chr13 23838858 23839032 -95905866 - AluSc SINE Alu -126 183 10 253 295 103 0 chr13 23839227 23839305 -95905593 - MIR3 SINE MIR -15 193 108 1754 161 33 4 chr13 23840688 23840997 -95903901 + AluSx SINE Alu 1 317 0 1921 143 20 7 chr13 23841007 23841301 -95903597 + AluJo SINE Alu 1 298 -14 217 235 39 0 chr13 23843248 23843299 -95901599 - L2 LINE L2 -680 2634 2582 1240 197 55 3 chr13 23843555 23843845 -95901053 + MER33 DNA MER1_type 11 315 -9 211 272 80 74 chr13 23843890 23844052 -95900846 - MIR3 SINE MIR -11 197 35 4769 132 13 9 chr13 23845169 23845922 -95898976 - L1MC1 LINE L1 -246 6087 5332 2534 73 0 0 chr13 23845922 23846225 -95898673 - AluY SINE Alu -8 303 1 1770 88 0 0 chr13 23846225 23846442 -95898456 - AluSc SINE Alu -20 289 73 978 69 0 0 chr13 23846444 23846560 -95898338 - AluSc SINE Alu -180 129 14 983 204 13 34 chr13 23846561 23846796 -95898102 - L1MC1 LINE L1 -816 5330 5101 248 269 78 91 chr13 23847166 23847978 -95896920 - L1MDa LINE L1 -856 2045 1285 541 304 57 0 chr13 23848474 23848668 -95896230 + MIR SINE MIR 37 241 -21 24 77 0 0 chr13 23848676 23848728 -95896170 + AT_rich Low_complexity Low_complexity 1 52 0 1290 178 5 5 chr13 23848864 23849077 -95895821 - AluJb SINE Alu -13 299 87 2136 104 10 13 chr13 23849087 23849386 -95895512 - AluSx SINE Alu -14 298 1 2307 57 0 4 chr13 23849885 23850195 -95894703 + AluY SINE Alu 1 309 0 2229 115 3 0 chr13 23850952 23851247 -95893651 + AluSx SINE Alu 1 296 -16 313 134 15 15 chr13 23851334 23851401 -95893497 + GA-rich Low_complexity Low_complexity 3 69 0 1947 191 70 27 chr13 23851489 23851929 -95892969 - LTR2B LTR ERV1 0 490 32 186 333 14 92 chr13 23852836 23852977 -95891921 - L2 LINE L2 -10 3262 3133 2112 117 3 10 chr13 23853145 23853464 -95891434 - AluSx SINE Alu 0 312 1 1516 189 42 95 chr13 23853492 23853818 -95891080 - L1ME1 LINE L1 -6 6160 5861 2280 102 17 0 chr13 23853818 23854111 -95890787 + AluSx SINE Alu 1 298 -14 1516 189 42 95 chr13 23854111 23854217 -95890681 - L1ME1 LINE L1 -305 5861 5751 200 200 18 0 chr13 23854498 23854553 -95890345 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 197 305 86 47 chr13 23854567 23854695 -95890203 - L2 LINE L2 -2 3270 3138 3428 121 74 3 chr13 23855395 23855965 -95888933 + LTR24C LTR ERV1 1 610 -25 830 184 0 0 chr13 23855965 23856106 -95888792 + FLAM_A SINE Alu 1 141 -1 311 53 0 0 chr13 23856108 23856146 -95888752 + LTR24C LTR ERV1 598 635 0 1545 167 108 7 chr13 23856304 23856573 -95888325 - AluJo SINE Alu -16 296 1 2378 106 0 0 chr13 23856584 23856886 -95888012 - AluSx SINE Alu -10 302 1 207 185 19 37 chr13 23857571 23857625 -95887273 + A-rich Low_complexity Low_complexity 4 56 0 1091 196 47 120 chr13 23857785 23858360 -95886538 + MER34B LTR ERV1 1 521 -21 3980 124 38 11 chr13 23858544 23858764 -95886134 - MER39B LTR ERV1 0 653 440 1468 189 0 4 chr13 23858764 23859007 -95885891 - AluJo SINE Alu -70 242 1 2207 114 7 0 chr13 23859014 23859312 -95885586 - AluSc SINE Alu -9 300 1 3980 124 38 11 chr13 23859312 23859718 -95885180 - MER39B LTR ERV1 -218 435 2 849 192 33 33 chr13 23860001 23860183 -95884715 - MER70A LTR ERVL -16 456 275 976 178 31 21 chr13 23860229 23860420 -95884478 - MER70B LTR ERVL -385 193 1 6007 118 16 3 chr13 23860784 23861676 -95883222 - MER4D LTR ERV1 0 903 1 198 256 178 11 chr13 23861726 23861816 -95883082 + L2 LINE L2 3206 3310 -3 896 199 21 31 chr13 23862341 23862532 -95882366 - MER5A DNA MER1_type 0 189 1 2759 19 0 13 chr13 23862562 23862872 -95882026 - AluYa5 SINE Alu -5 306 1 741 202 0 11 chr13 23862877 23863141 -95881757 + CT-rich Low_complexity Low_complexity 1 261 0 1446 155 4 13 chr13 23863154 23863393 -95881505 - AluJo SINE Alu -73 239 3 1150 132 20 0 chr13 23863542 23863739 -95881159 - L1MA4A LINE L1 0 6303 6103 1413 142 18 0 chr13 23864822 23865041 -95879857 - MER44D DNA MER2_type -14 591 314 808 209 14 0 chr13 23865041 23865189 -95879709 - FRAM SINE Alu -26 150 1 1822 189 12 16 chr13 23865190 23865512 -95879386 - MER44D DNA MER2_type -377 328 8 1355 214 16 43 chr13 23865834 23865953 -95878945 + MLT1A1 LTR MaLR 53 174 -191 1719 207 8 40 chr13 23865953 23866330 -95878568 - MLT1A1 LTR MaLR 0 365 1 1355 214 16 43 chr13 23866330 23866532 -95878366 + MLT1A1 LTR MaLR 174 365 0 530 367 96 0 chr13 23867144 23867384 -95877514 - L2 LINE L2 0 3272 3010 375 313 151 20 chr13 23867712 23868443 -95876455 - L2 LINE L2 -731 2583 1758 261 83 0 0 chr13 23869122 23869158 -95875740 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2215 156 85 16 chr13 23869256 23869679 -95875219 - LTR47A LTR ERVL 0 452 1 213 200 21 116 chr13 23869717 23869812 -95875086 - L2 LINE L2 -181 3091 3006 1303 62 0 0 chr13 23871088 23871249 -95873649 + L1PA8 LINE L1 5998 6158 -14 2228 96 3 3 chr13 23871283 23871574 -95873324 + AluSc SINE Alu 1 291 -18 180 200 0 0 chr13 23873112 23873157 -95871741 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1148 129 0 0 chr13 23873184 23873339 -95871559 - AluSq SINE Alu -158 155 1 579 222 44 39 chr13 23873339 23873519 -95871379 - L1M4 LINE L1 -1100 5046 4866 206 372 39 74 chr13 23873750 23874008 -95870890 + L2 LINE L2 2992 3240 -32 186 167 0 0 chr13 23875183 23875219 -95869679 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 2162 100 14 17 chr13 23876315 23876606 -95868292 - AluSx SINE Alu -22 290 1 2055 114 0 0 chr13 23876758 23877038 -95867860 - AluSq SINE Alu -1 312 33 237 313 61 10 chr13 23877508 23877607 -95867291 - MIR3 SINE MIR -10 198 95 2354 102 0 3 chr13 23877675 23877980 -95866918 - AluSx SINE Alu -8 304 1 751 295 119 28 chr13 23878726 23879325 -95865573 + L2 LINE L2 2420 3142 -171 1687 196 7 0 chr13 23879325 23879616 -95865282 - AluJo SINE Alu -19 293 1 751 295 119 28 chr13 23879616 23879728 -95865170 + L2 LINE L2 3142 3242 -71 192 360 13 0 chr13 23880884 23880959 -95863939 + MIR3 SINE MIR 95 170 -38 294 172 0 17 chr13 23881149 23881207 -95863691 - MER5A DNA MER1_type -78 111 55 1172 216 164 19 chr13 23881949 23882320 -95862578 - LTR37A LTR ERV1 0 426 2 201 175 0 0 chr13 23882538 23882578 -95862320 + (TG)n Simple_repeat Simple_repeat 1 40 0 646 189 57 39 chr13 23882802 23882984 -95861914 - MER39 LTR ERV1 0 684 399 906 114 0 0 chr13 23884071 23884202 -95860696 + L1PA10 LINE L1 6028 6158 -10 1719 186 3 0 chr13 23884831 23885121 -95859777 - AluJo SINE Alu -21 291 1 2619 139 11 18 chr13 23886101 23886547 -95858351 - MER65A LTR ERV1 -1 444 2 364 284 129 40 chr13 23886694 23887235 -95857663 - L1MC4a LINE L1 -599 5575 5348 2209 131 0 0 chr13 23888163 23888461 -95856437 + AluSq SINE Alu 1 298 -15 391 148 0 0 chr13 23888884 23888945 -95855953 - L1MC1 LINE L1 -395 5938 5878 237 27 0 0 chr13 23888950 23888987 -95855911 - Alu SINE Alu -1 298 262 1131 141 5 44 chr13 23889006 23889060 -95855838 - L1MC1 LINE L1 -395 5938 5883 2457 76 0 7 chr13 23889060 23889364 -95855534 - AluY SINE Alu -9 302 1 1131 141 5 44 chr13 23889364 23889515 -95855383 - L1MC1 LINE L1 -450 5883 5741 * 1660 176 25 41 chr13 23889496 23889596 -95855302 + L1MC2 LINE L1 5917 6017 -327 2221 154 65 12 chr13 23889596 23889999 -95854899 - MSTB LTR MaLR 0 426 3 1660 176 25 41 chr13 23889999 23890149 -95854749 + L1MC2 LINE L1 6017 6168 -176 2018 134 0 11 chr13 23890149 23890433 -95854465 + AluSx SINE Alu 1 281 -31 204 40 0 0 chr13 23890438 23890463 -95854435 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1660 176 25 41 chr13 23890463 23890568 -95854330 + L1MC2 LINE L1 6172 6273 -71 3154 95 71 11 chr13 23890589 23891040 -95853858 + MER1A DNA MER1_type 51 528 -1 233 180 20 0 chr13 23891041 23891091 -95853807 + L1MC2 LINE L1 6270 6320 -24 2190 125 0 0 chr13 23891102 23891397 -95853501 + AluSc SINE Alu 1 295 -14 1738 158 50 0 chr13 23891404 23891682 -95853216 + AluJb SINE Alu 1 292 -20 23 33 0 0 chr13 23891687 23891717 -95853181 + AT_rich Low_complexity Low_complexity 1 30 0 2158 121 0 9 chr13 23892574 23892889 -95852009 + AluSq SINE Alu 1 312 -1 213 290 14 0 chr13 23893617 23893686 -95851212 - L2 LINE L2 -994 2320 2251 213 272 126 46 chr13 23893777 23894016 -95850882 - L2 LINE L2 -1232 2082 1825 2183 117 17 0 chr13 23894087 23894386 -95850512 - AluSx SINE Alu -8 304 1 285 98 0 0 chr13 23894484 23894525 -95850373 + (CA)n Simple_repeat Simple_repeat 2 42 0 2342 93 6 3 chr13 23894630 23894941 -95849957 - AluSp SINE Alu -1 312 1 1881 188 22 5 chr13 23895277 23895644 -95849254 - L1MB7 LINE L1 -67 6117 5745 1938 149 0 3 chr13 23896754 23897055 -95847843 - AluJo SINE Alu 0 312 13 2305 173 44 2 chr13 23897189 23897618 -95847280 + L1PB4 LINE L1 5710 6156 0 2062 139 0 16 chr13 23897825 23898142 -95846756 - AluSx SINE Alu 0 312 1 2439 71 10 0 chr13 23898616 23898912 -95845986 - AluSq SINE Alu -14 299 1 669 56 0 0 chr13 23899406 23899496 -95845402 + (TG)n Simple_repeat Simple_repeat 2 91 0 5768 116 18 13 chr13 23899611 23900273 -95844625 - L1PA16 LINE L1 -9 6157 5489 2013 146 7 3 chr13 23900273 23900568 -95844330 - AluJb SINE Alu -16 296 1 5768 116 18 13 chr13 23900568 23900756 -95844142 - L1PA16 LINE L1 -677 5489 5303 1828 154 17 7 chr13 23901854 23902152 -95842746 + AluJo SINE Alu 2 302 -10 205 26 53 26 chr13 23902157 23902195 -95842703 + (GAAAA)n Simple_repeat Simple_repeat 5 43 0 1685 164 34 20 chr13 23903120 23903412 -95841486 + AluJo SINE Alu 1 296 -16 4472 144 64 53 chr13 23905225 23905903 -95838995 - L1MB3 LINE L1 -2 6181 5493 1572 171 28 21 chr13 23905903 23906190 -95838708 - AluJo SINE Alu -8 304 16 4472 144 64 53 chr13 23906190 23906617 -95838281 - L1MB3 LINE L1 -690 5493 5072 640 238 15 40 chr13 23907164 23907366 -95837532 + L2 LINE L2 3117 3313 0 2167 218 134 46 chr13 23907450 23908130 -95836768 - L1ME3 LINE L1 -30 6201 5411 1992 127 29 0 chr13 23908130 23908429 -95836469 - AluSx SINE Alu 0 307 1 2167 218 134 46 chr13 23908429 23908719 -95836179 - L1ME3 LINE L1 -820 5411 5148 840 212 0 0 chr13 23910338 23910511 -95834387 - AluJb SINE Alu 0 309 137 1460 108 21 21 chr13 23910754 23910892 -95834006 - L1MA4 LINE L1 0 6300 6160 2491 199 107 60 chr13 23910892 23911681 -95833217 - LTR1B LTR ERV1 0 826 1 1460 108 21 21 chr13 23911681 23911783 -95833115 - L1MA4 LINE L1 -139 6161 6060 240 306 87 27 chr13 23912014 23912137 -95832761 - L1ME LINE L1 -224 5897 5758 2130 116 0 47 chr13 23912137 23912456 -95832442 - AluSx SINE Alu -8 304 1 240 306 87 27 chr13 23912456 23912515 -95832383 - L1ME LINE L1 -363 5758 5704 1848 236 142 12 chr13 23912561 23913314 -95831584 - L1ME3 LINE L1 -2928 3287 2437 5233 78 10 3 chr13 23913315 23914017 -95830881 - L1PA13 LINE L1 -3 6160 5454 198 0 0 0 chr13 23914020 23914042 -95830856 + (TG)n Simple_repeat Simple_repeat 1 22 0 2497 46 0 0 chr13 23914042 23914322 -95830576 - AluY SINE Alu -31 280 1 592 169 0 0 chr13 23914324 23914413 -95830485 - AluJ/FLAM SINE Alu -222 90 2 787 262 70 23 chr13 23914433 23914777 -95830121 - L1ME3 LINE L1 -5015 1381 1022 605 321 15 19 chr13 23914771 23915033 -95829865 - L1ME3 LINE L1 -6100 296 36 * 2445 80 3 0 chr13 23915344 23915646 -95829252 - AluY SINE Alu -8 303 1 2073 122 7 0 chr13 23916307 23916601 -95828297 + AluSx SINE Alu 1 296 -16 2104 102 4 4 chr13 23916617 23916891 -95828007 - AluSq SINE Alu -11 302 29 427 337 10 15 chr13 23917860 23918059 -95826839 - LTR16B LTR ERVL -9 455 258 2454 76 0 0 chr13 23918135 23918436 -95826462 + AluSg SINE Alu 1 301 -9 1630 110 9 0 chr13 23920368 23920596 -95824302 + MER30 DNA MER1_type 1 230 0 369 299 7 28 chr13 23920948 23921092 -95823806 + MIR SINE MIR 81 221 -41 637 188 8 16 chr13 23921879 23922007 -95822891 - FLAM_A SINE Alu -6 127 1 564 309 127 16 chr13 23922895 23923335 -95821563 - L2 LINE L2 0 3313 2825 2175 111 4 0 chr13 23923413 23923727 -95821171 + AluSx SINE Alu 1 315 0 333 118 0 0 chr13 23925325 23925376 -95819522 + (GGA)n Simple_repeat Simple_repeat 3 53 0 451 206 22 0 chr13 23925376 23925468 -95819430 + MER58C DNA MER1_type 122 215 0 224 232 36 0 chr13 23925487 23925543 -95819355 - MIR SINE MIR -66 142 85 1233 262 83 101 chr13 23925697 23926419 -95818479 - MER21B LTR ERV1 -149 714 6 23 68 0 0 chr13 23926903 23926947 -95817951 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr13 23927944 23927964 -95816934 + (A)n Simple_repeat Simple_repeat 1 20 0 295 243 54 72 chr13 23928303 23928414 -95816484 - L2 LINE L2 0 3313 3205 941 134 0 12 chr13 23929163 23929327 -95815571 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 841 125 0 8 chr13 23929328 23929448 -95815450 - FLAM_C SINE Alu -24 119 1 2352 48 10 3 chr13 23931080 23931374 -95813524 - AluY SINE Alu -15 296 1 201 108 0 0 chr13 23932280 23932317 -95812581 + (CGGGGG)n Simple_repeat Simple_repeat 3 39 0 26 30 0 0 chr13 23932400 23932433 -95812465 + GC_rich Low_complexity Low_complexity 1 33 0 365 323 0 0 chr13 23933252 23933351 -95811547 - MIR SINE MIR -127 135 37 3349 151 53 67 chr13 23933896 23934598 -95810300 + L1MB7 LINE L1 5433 6124 -60 2153 107 28 0 chr13 23934877 23935166 -95809732 - AluSx SINE Alu -15 297 1 2260 123 0 0 chr13 23935635 23935935 -95808963 + AluSx SINE Alu 1 300 -12 26 64 0 0 chr13 23936111 23936158 -95808740 + AT_rich Low_complexity Low_complexity 1 47 0 1088 205 31 5 chr13 23937066 23937290 -95807608 - L1MB8 LINE L1 -39 6139 5910 21 36 0 0 chr13 23937351 23937379 -95807519 + AT_rich Low_complexity Low_complexity 1 28 0 2528 75 0 3 chr13 23937803 23938110 -95806788 + AluY SINE Alu 1 306 -5 5712 116 0 15 chr13 23938224 23938371 -95806527 - L1PA14 LINE L1 0 6161 6013 1978 97 38 56 chr13 23938371 23938659 -95806239 - AluSx SINE Alu -29 283 1 5712 116 0 15 chr13 23938659 23939553 -95805345 - L1PA14 LINE L1 -148 6013 5144 2021 130 0 13 chr13 23939813 23940112 -95804786 - AluSx SINE Alu -16 296 2 1183 210 47 5 chr13 23940879 23941175 -95803723 + L1MD3 LINE L1 7481 7967 -15 2318 101 0 0 chr13 23941178 23941474 -95803424 + AluSq SINE Alu 1 296 -17 277 174 64 92 chr13 23942334 23942379 -95802519 - Charlie7 DNA MER1_type 0 2612 2567 2182 93 21 3 chr13 23942379 23942669 -95802229 - AluSc SINE Alu -14 295 1 277 174 64 92 chr13 23942669 23942732 -95802166 - Charlie7 DNA MER1_type -45 2567 2507 * 713 266 35 31 chr13 23942726 23943015 -95801883 - Charlie7 DNA MER1_type -1923 689 400 7411 59 8 38 chr13 23943016 23944725 -95800173 - SVA Other Other -683 1383 1 291 297 79 7 chr13 23944801 23944979 -95799919 + MLT1J LTR MaLR 43 270 -241 421 278 42 0 chr13 23944988 23945132 -95799766 - Charlie7 DNA MER1_type -2209 403 254 1487 154 41 110 chr13 23945139 23945529 -95799369 - MLT1A2 LTR MaLR -11 363 1 295 268 143 0 chr13 23945572 23945684 -95799214 - Charlie7 DNA MER1_type -2429 183 56 189 262 8 71 chr13 23945958 23946084 -95798814 - L2 LINE L2 -250 3022 2905 2238 114 16 50 chr13 23946115 23946492 -95798406 + THE1B LTR MaLR 1 364 0 877 157 8 0 chr13 23947144 23947278 -95797620 + AluJo SINE Alu 3 137 -175 198 0 0 0 chr13 23948018 23948040 -95796858 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2067 122 10 7 chr13 23948044 23948339 -95796559 - AluSq SINE Alu -16 297 2 1821 151 3 14 chr13 23950206 23950498 -95794400 + AluJb SINE Alu 1 289 -23 263 299 62 0 chr13 23950973 23951070 -95793828 + MIR SINE MIR 151 253 -9 198 103 0 0 chr13 23951353 23951382 -95793516 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 236 353 58 13 chr13 23951444 23951600 -95793298 + MIR SINE MIR 56 218 -44 1292 174 20 4 chr13 23951680 23951927 -95792971 - L1MB2 LINE L1 0 6171 5921 1498 152 144 0 chr13 23951984 23952240 -95792658 + AluSx SINE Alu 3 295 -17 244 233 55 27 chr13 23953977 23954050 -95790848 - MIR SINE MIR -115 147 73 395 216 237 0 chr13 23954076 23954173 -95790725 + MER97b DNA MER1_type? 27 146 -907 1051 224 82 30 chr13 23954241 23954555 -95790343 - AluJo SINE Alu 0 341 14 491 279 54 44 chr13 23954696 23954900 -95789998 + MER97c DNA MER1_type? 274 479 -611 759 176 7 7 chr13 23954914 23955050 -95789848 - AluJo SINE Alu -175 137 2 1216 209 120 9 chr13 23955051 23955400 -95789498 + MER97b DNA MER1_type? 472 859 -194 363 270 40 62 chr13 23955510 23955579 -95789319 + MER97c DNA MER1_type? 867 936 -154 2184 123 3 0 chr13 23955579 23955879 -95789019 - AluSx SINE Alu -11 301 1 363 270 40 62 chr13 23955879 23956035 -95788863 + MER97c DNA MER1_type? 936 1087 -3 194 354 25 0 chr13 23956170 23956249 -95788649 + MIR3 SINE MIR 119 199 -9 1623 172 0 29 chr13 23958974 23959282 -95785616 - AluJo SINE Alu -5 307 9 2129 75 3 38 chr13 23961194 23961509 -95783389 + AluY SINE Alu 1 305 0 370 250 318 5 chr13 23962233 23962425 -95782473 - MIR SINE MIR -3 259 8 190 286 66 33 chr13 23962971 23963062 -95781836 + MIR SINE MIR 50 143 -119 1622 158 44 11 chr13 23964117 23964390 -95780508 - AluJb SINE Alu -20 292 11 1779 223 98 25 chr13 23964655 23965175 -95779723 - MER74A LTR ERVL 0 558 1 195 129 0 0 chr13 23967935 23967966 -95776932 + (T)n Simple_repeat Simple_repeat 1 31 0 2934 7 0 0 chr13 23967982 23968291 -95776607 + AluYb8 SINE Alu 1 309 -9 313 136 0 0 chr13 23970234 23970278 -95774620 - Alu SINE Alu -256 44 1 * 859 133 193 6 chr13 23970278 23970439 -95774459 - MER46B DNA MER2_type -169 67 1 319 196 0 0 chr13 23970391 23970447 -95774451 + MER46A DNA MER2_type 97 152 -84 * 204 40 0 0 chr13 23970461 23970486 -95774412 + (TA)n Simple_repeat Simple_repeat 2 26 0 315 0 0 0 chr13 23970743 23970778 -95774120 + (TG)n Simple_repeat Simple_repeat 2 36 0 2230 64 4 0 chr13 23970925 23971192 -95773706 - AluY SINE Alu -9 302 35 606 264 68 23 chr13 23971199 23971506 -95773392 - HAL1 LINE L1 -1126 1381 1061 283 169 108 0 chr13 23971581 23971646 -95773252 - HAL1 LINE L1 -1608 899 828 3966 192 23 12 chr13 23971653 23972429 -95772469 - L1MB4 LINE L1 0 6180 5396 619 299 58 58 chr13 23972418 23972990 -95771908 - HAL1 LINE L1 -1653 854 283 * 2264 106 3 0 chr13 23973169 23973462 -95771436 + AluSq SINE Alu 1 294 -19 28 29 0 0 chr13 23974712 23974747 -95770151 + AT_rich Low_complexity Low_complexity 1 35 0 5643 115 20 53 chr13 23974766 23975883 -95769015 - L1PB1 LINE L1 -21 6130 5058 1388 199 24 10 chr13 23978537 23978833 -95766065 + L1MB4 LINE L1 5880 6179 -1 220 209 0 0 chr13 23978851 23978894 -95766004 + (CATA)n Simple_repeat Simple_repeat 2 44 0 331 261 106 49 chr13 23979678 23979904 -95764994 + L1 LINE L1 4177 4415 -1731 23 0 0 0 chr13 23980084 23980107 -95764791 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 23982166 23982191 -95762707 + (TC)n Simple_repeat Simple_repeat 2 26 0 2105 108 11 14 chr13 23982191 23982478 -95762420 - AluSx SINE Alu -26 286 1 230 255 53 94 chr13 23984003 23984120 -95760778 - MIR SINE MIR -84 124 10 481 259 40 65 chr13 23984421 23984742 -95760156 - HAL1 LINE L1 -1351 1156 844 771 235 108 110 chr13 23985223 23985669 -95759229 + MLT2B2 LTR ERVL 1 445 -19 253 250 44 0 chr13 23986159 23986227 -95758671 + L1ME3A LINE L1 6072 6142 -28 2275 120 0 0 chr13 23987097 23987406 -95757492 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 23987408 23987434 -95757464 + AT_rich Low_complexity Low_complexity 1 26 0 743 151 0 0 chr13 23987445 23987551 -95757347 + U6 snRNA snRNA 2 107 0 871 315 44 46 chr13 23989241 23989839 -95755059 + L2 LINE L2 2711 3302 -11 13777 169 38 62 chr13 23990244 23990917 -95753981 - L1MA4 LINE L1 -12 6470 5782 2334 81 3 44 chr13 23990917 23991238 -95753660 - AluY SINE Alu -3 308 1 13777 169 38 62 chr13 23991238 23992039 -95752859 - L1MA4 LINE L1 -700 5782 4963 482 184 69 0 chr13 23992039 23992126 -95752772 - FLAM SINE Alu -12 131 39 13777 169 38 62 chr13 23992126 23993167 -95751731 - L1MA4 LINE L1 -1519 4963 3899 1934 146 24 3 chr13 23993167 23993462 -95751436 + AluSx SINE Alu 1 301 -11 13777 169 38 62 chr13 23993462 23993598 -95751300 - L1MA4 LINE L1 -2583 3899 3761 875 175 18 24 chr13 23993598 23993764 -95751134 - AluJb SINE Alu -13 299 135 13777 169 38 62 chr13 23993764 23997516 -95747382 - L1MA4 LINE L1 -2721 3761 1 651 160 194 0 chr13 23997605 23997755 -95747143 + MER5A DNA MER1_type 4 187 -2 646 51 0 0 chr13 23998987 23999065 -95745833 - L1PA5 LINE L1 -1 6153 6076 212 373 36 0 chr13 23999071 23999181 -95745717 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 1769 105 34 4 chr13 23999194 23999465 -95745433 - L1PA5 LINE L1 -34 6120 5841 581 76 49 45 chr13 24001443 24001709 -95743189 + (TA)n Simple_repeat Simple_repeat 1 267 0 317 275 0 37 chr13 24001712 24001821 -95743077 + L1MC4 LINE L1 6614 6718 -1324 1983 146 104 3 chr13 24001924 24002252 -95742646 + MER46B DNA MER2_type 1 236 0 1988 156 3 3 chr13 24002982 24003290 -95741608 - AluJb SINE Alu -4 308 1 203 293 120 23 chr13 24005037 24005170 -95739728 - L2 LINE L2 -26 3246 3101 * 708 235 16 22 chr13 24005107 24005290 -95739608 - MER5A DNA MER1_type -7 182 1 2059 133 13 3 chr13 24005860 24006169 -95738729 + AluJb SINE Alu 1 312 0 2097 112 3 16 chr13 24006437 24006740 -95738158 - AluSx SINE Alu -13 299 1 323 320 22 43 chr13 24007191 24007392 -95737506 - MIR SINE MIR -60 202 4 342 308 83 8 chr13 24007638 24007758 -95737140 + MIR SINE MIR 21 149 -113 694 279 25 15 chr13 24007778 24007982 -95736916 - MIR SINE MIR -56 206 1 360 0 0 0 chr13 24009385 24009425 -95735473 + (TG)n Simple_repeat Simple_repeat 2 41 0 1718 138 19 70 chr13 24009425 24009737 -95735161 - AluJo SINE Alu -16 296 1 341 296 179 25 chr13 24009817 24009979 -95734919 - MIR SINE MIR -19 243 57 2172 129 0 10 chr13 24011180 24011489 -95733409 - AluSx SINE Alu -6 306 1 1338 159 0 10 chr13 24011650 24011858 -95733040 + AluJo SINE Alu 86 291 -21 21 36 0 0 chr13 24013237 24013265 -95731633 + AT_rich Low_complexity Low_complexity 1 28 0 222 327 159 0 chr13 24014422 24014535 -95730363 - L2 LINE L2 0 3272 3142 250 333 116 21 chr13 24014818 24015242 -95729656 - L2 LINE L2 -2333 981 518 565 167 11 0 chr13 24015752 24015842 -95729056 + FLAM_A SINE Alu 36 126 -16 2129 138 0 0 chr13 24015954 24016259 -95728639 - AluJb SINE Alu -7 305 1 497 241 103 69 chr13 24017015 24017172 -95727726 - MIR SINE MIR -37 225 56 2220 96 0 0 chr13 24017172 24017499 -95727399 + AluSx SINE Alu 1 327 0 497 241 103 69 chr13 24017499 24017542 -95727356 - MIR SINE MIR -206 56 16 3801 109 13 2 chr13 24017542 24018064 -95726834 + MER1A DNA MER1_type 1 528 -1 2008 144 0 6 chr13 24018266 24018579 -95726319 + AluSx SINE Alu 1 311 -1 2298 97 0 7 chr13 24019502 24019801 -95725097 + AluSg SINE Alu 1 297 -13 561 243 40 40 chr13 24019984 24020157 -95724741 - MLT1D LTR MaLR 0 505 333 628 223 0 136 chr13 24020208 24020347 -95724551 - MLT1D LTR MaLR -315 190 90 2177 107 3 3 chr13 24020347 24020645 -95724253 + AluSx SINE Alu 1 298 -14 628 223 0 136 chr13 24020645 24020725 -95724173 - MLT1D LTR MaLR -415 90 1 588 258 92 72 chr13 24022045 24022309 -95722589 - L1MEc LINE L1 -4303 2093 1819 2230 119 0 0 chr13 24022309 24022611 -95722287 - AluSx SINE Alu -10 302 1 588 258 92 72 chr13 24022611 24022706 -95722192 - L1MEc LINE L1 -4577 1819 1727 286 282 137 8 chr13 24022707 24022948 -95721950 - L1MEc LINE L1 -4425 1971 1700 197 208 42 21 chr13 24024005 24024053 -95720845 + L2 LINE L2 3261 3309 -4 474 18 0 0 chr13 24024836 24024891 -95720007 + (TG)n Simple_repeat Simple_repeat 2 56 0 2079 137 0 3 chr13 24024892 24025184 -95719714 - AluSx SINE Alu -21 291 1 6091 102 7 4 chr13 24025950 24026965 -95717933 - L1PA16 LINE L1 -2 6164 5128 253 292 201 11 chr13 24027026 24027184 -95717714 - MIR SINE MIR -61 147 3 2139 105 17 10 chr13 24028232 24028526 -95716372 - AluSq SINE Alu -17 296 1 23 0 0 0 chr13 24029139 24029162 -95715736 + AT_rich Low_complexity Low_complexity 1 23 0 2197 131 3 0 chr13 24029575 24029880 -95715018 + AluSx SINE Alu 1 306 -6 1690 178 11 3 chr13 24030166 24030452 -95714446 - AluJo SINE Alu -24 288 1 274 284 62 62 chr13 24030550 24030726 -95714172 - HAL1 LINE L1 -23 2484 2309 2324 105 0 3 chr13 24030742 24031048 -95713850 + AluSx SINE Alu 1 305 -7 434 314 118 14 chr13 24031560 24031836 -95713062 + L1ME LINE L1 5298 5600 -570 383 136 30 0 chr13 24031848 24031914 -95712984 + L1MC3 LINE L1 7552 7619 -166 418 272 49 33 chr13 24031924 24032125 -95712773 + L1ME LINE L1 5605 5824 -297 825 267 88 18 chr13 24032574 24032859 -95712039 + MER69 DNA AcHobo 244 548 -1978 1199 216 101 23 chr13 24032869 24033305 -95711593 + MER69 DNA AcHobo 2022 2491 -35 423 0 0 0 chr13 24033806 24033853 -95711045 + (CA)n Simple_repeat Simple_repeat 2 48 0 426 214 46 64 chr13 24034505 24034678 -95710220 - HAL1 LINE L1 -8 2499 2330 21 0 0 0 chr13 24034925 24034946 -95709952 + AT_rich Low_complexity Low_complexity 1 21 0 228 284 12 49 chr13 24035125 24035206 -95709692 - HAL1 LINE L1 -767 1740 1663 401 290 248 29 chr13 24035215 24035522 -95709376 - HAL1 LINE L1 -898 1609 1236 6288 55 46 45 chr13 24035522 24036640 -95708258 - SVA Other Other -551 1380 433 362 279 99 87 chr13 24086663 24086985 -95657913 - L1M4 LINE L1 -1826 4320 3995 1055 268 104 30 chr13 24087011 24087458 -95657440 - L1M4 LINE L1 -2218 3928 3411 2261 103 7 0 chr13 24087458 24087748 -95657150 + AluSc SINE Alu 1 292 -17 1055 268 104 30 chr13 24087748 24087990 -95656908 - L1M4 LINE L1 -2735 3411 3188 303 316 95 57 chr13 24088537 24088800 -95656098 - L1M4 LINE L1 -1186 4960 4688 860 132 26 0 chr13 24089381 24089519 -95655379 - L1P LINE L1 -1118 5028 4884 2850 100 15 8 chr13 24089519 24089920 -95654978 + L1PA13 LINE L1 5760 6163 0 860 132 26 0 chr13 24089920 24089933 -95654965 - L1P LINE L1 -1262 4884 4873 1830 167 7 10 chr13 24090497 24090802 -95654096 - AluJb SINE Alu -8 304 1 2287 111 7 0 chr13 24091447 24091754 -95653144 - AluSx SINE Alu -3 309 1 368 287 144 11 chr13 24092338 24092519 -95652379 + MIR SINE MIR 39 243 -19 2291 105 10 0 chr13 24092573 24092868 -95652030 - AluSx SINE Alu -14 298 1 764 77 0 0 chr13 24092961 24093052 -95651846 + AluSg/x SINE Alu 208 298 -14 2289 129 0 0 chr13 24093066 24093377 -95651521 + AluSx SINE Alu 1 311 -1 687 239 101 0 chr13 24093680 24093868 -95651030 - MER102a DNA MER1_type 0 330 124 1134 227 61 64 chr13 24094566 24094651 -95650247 + MER90 LTR ERV1 238 322 -292 2333 91 0 3 chr13 24094651 24094949 -95649949 + AluSq SINE Alu 1 297 -16 1134 227 61 64 chr13 24094949 24095238 -95649660 + MER90 LTR ERV1 322 611 -3 953 271 8 4 chr13 24098271 24098511 -95646387 + MIR SINE MIR 1 241 -21 348 296 24 48 chr13 24099377 24099502 -95645396 - MIR SINE MIR -117 145 24 1508 127 0 0 chr13 24100222 24100435 -95644463 + AluJb SINE Alu 1 213 -99 821 153 8 15 chr13 24101610 24101741 -95643157 + FLAM_A SINE Alu 4 133 0 767 146 0 41 chr13 24102022 24102145 -95642753 - FLAM_A SINE Alu -13 120 3 221 163 75 0 chr13 24102169 24102249 -95642649 + (TA)n Simple_repeat Simple_repeat 1 86 0 1914 118 3 88 chr13 24102496 24102835 -95642063 - AluSx SINE Alu -2 310 1 4477 239 48 62 chr13 24103252 24103284 -95641614 - L1M4c LINE L1 -4186 2639 2608 1538 142 62 31 chr13 24103284 24103531 -95641367 - L1MB5 LINE L1 -8 6166 5907 2477 186 13 45 chr13 24103531 24104003 -95640895 + MSTB2 LTR MaLR 1 457 0 1538 142 62 31 chr13 24104003 24104044 -95640854 - L1MB5 LINE L1 -267 5907 5869 4477 239 48 62 chr13 24104044 24106523 -95638375 - L1M4c LINE L1 -4217 2608 14 9499 52 1 0 chr13 24107301 24108371 -95636527 + MER11C LTR ERVK 1 1071 0 297 320 20 0 chr13 24109046 24109146 -95635752 - L3 LINE CR1 -249 1328 1227 642 153 46 8 chr13 24112237 24112368 -95632530 + L1MA4A LINE L1 6168 6303 0 27 0 0 0 chr13 24112972 24112999 -95631899 + AT_rich Low_complexity Low_complexity 1 27 0 831 211 139 0 chr13 24113449 24113629 -95631269 - MER3 DNA MER1_type -4 205 1 421 222 159 8 chr13 24114982 24115108 -95629790 + MIR3 SINE MIR 4 148 -60 184 382 80 43 chr13 24115227 24115737 -95629161 - L2 LINE L2 -661 2653 2125 216 220 169 0 chr13 24116059 24116118 -95628780 - L2 LINE L2 -2066 1248 1180 1425 226 108 39 chr13 24116401 24116835 -95628063 + MLT1C LTR MaLR 3 466 -1 668 265 113 95 chr13 24121625 24122515 -95622383 - L2 LINE L2 0 3313 2318 379 252 72 9 chr13 24122831 24122942 -95621956 - MER102a DNA MER1_type -147 183 66 289 286 50 21 chr13 24123129 24123269 -95621629 + L2 LINE L2 3106 3249 -64 2491 258 22 41 chr13 24126854 24127666 -95617232 + L1ME1 LINE L1 5373 6334 0 412 259 27 34 chr13 24129177 24129324 -95615574 + Tigger8 DNA MER2_type 430 575 -91 192 40 0 0 chr13 24129959 24129984 -95614914 + (TC)n Simple_repeat Simple_repeat 2 26 0 843 186 84 0 chr13 24129990 24130157 -95614741 - AluY SINE Alu -3 308 128 1337 144 4 48 chr13 24130160 24130389 -95614509 - AluSg/x SINE Alu -11 299 81 1360 180 62 42 chr13 24130985 24131274 -95613624 - AluJo SINE Alu -17 295 1 12051 118 43 9 chr13 24131345 24133187 -95611711 - Tigger1 DNA MER2_type 0 2418 514 1675 158 0 4 chr13 24133204 24133470 -95611428 - Tigger1 DNA MER2_type -2153 265 1 2099 121 0 3 chr13 24133564 24133876 -95611022 - AluSx SINE Alu 0 311 1 643 326 49 0 chr13 24133927 24134151 -95610747 - MIR SINE MIR -14 248 14 1638 149 19 55 chr13 24134520 24134829 -95610069 - AluJb SINE Alu -14 298 1 3792 180 100 9 chr13 24136549 24137531 -95607367 - L1MB8 LINE L1 -6 6172 5092 396 0 0 0 chr13 24138019 24138063 -95606835 + (CA)n Simple_repeat Simple_repeat 2 45 0 2323 113 0 0 chr13 24139364 24139673 -95605225 - AluSc SINE Alu 0 309 1 2578 173 86 29 chr13 24139695 24140244 -95604654 + L1MB5 LINE L1 5587 6166 -8 287 300 15 62 chr13 24140424 24140554 -95604344 + MER5B DNA MER1_type 49 172 -6 1714 149 27 27 chr13 24140633 24140929 -95603969 - AluJo SINE Alu -14 298 3 204 317 65 65 chr13 24141067 24141190 -95603708 - MIR SINE MIR -122 140 18 460 233 54 0 chr13 24141942 24142071 -95602827 - L1ME4a LINE L1 0 6121 5986 210 91 0 0 chr13 24145399 24145432 -95599466 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr13 24146401 24146430 -95598468 + AT_rich Low_complexity Low_complexity 1 29 0 1885 165 9 6 chr13 24146431 24146758 -95598140 - L1MA4 LINE L1 -10 6290 5963 215 317 39 39 chr13 24147166 24147270 -95597628 - MIR SINE MIR -47 215 112 2068 114 3 3 chr13 24147303 24147600 -95597298 - AluSx SINE Alu -15 297 1 813 185 0 22 chr13 24147723 24147858 -95597040 + FLAM_C SINE Alu 1 132 -1 396 103 0 0 chr13 24150411 24150469 -95594429 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 913 286 145 31 chr13 24150521 24150934 -95593964 + L2 LINE L2 2854 3313 0 333 303 62 28 chr13 24151469 24151614 -95593284 - L2 LINE L2 -458 2856 2707 4185 177 57 37 chr13 24151615 24152897 -95592001 - L1MB7 LINE L1 0 6184 4870 497 276 8 16 chr13 24152981 24153104 -95591794 - L2 LINE L2 -8 3305 3184 270 262 29 141 chr13 24153639 24153845 -95591053 - MIR SINE MIR -17 245 63 509 80 13 0 chr13 24155723 24155798 -95589100 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 2423 77 17 0 chr13 24156457 24156757 -95588141 - AluY SINE Alu -6 305 1 1096 188 99 5 chr13 24157257 24157417 -95587481 - AluJo SINE Alu -8 304 116 189 0 0 0 chr13 24157417 24157438 -95587460 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1096 188 99 5 chr13 24157438 24157500 -95587398 - AluJo SINE Alu -196 116 61 628 221 19 6 chr13 24157508 24157666 -95587232 - L1MB7 LINE L1 0 6184 6025 811 173 71 0 chr13 24157666 24157834 -95587064 - L1 LINE L1 -1006 5140 4961 2829 176 8 51 chr13 24157904 24158490 -95586408 - L1MB7 LINE L1 -192 5992 5432 853 300 88 11 chr13 24159211 24159667 -95585231 - L1ME3A LINE L1 -244 5926 5436 292 312 21 7 chr13 24159698 24159839 -95585059 - L1ME3A LINE L1 -3746 2400 2258 1422 181 63 52 chr13 24160107 24160510 -95584388 + MLT1E3 LTR MaLR 140 624 0 218 320 13 13 chr13 24161255 24161333 -95583565 - L2 LINE L2 -33 3239 3162 200 261 0 0 chr13 24162247 24162293 -95582605 - MIR SINE MIR -119 143 98 1042 190 59 69 chr13 24162644 24163082 -95581816 - MLT1D LTR MaLR -2 503 1 323 286 60 30 chr13 24164508 24164641 -95580257 + MIR SINE MIR 12 148 -114 180 200 0 0 chr13 24165329 24165369 -95579529 + CT-rich Low_complexity Low_complexity 1 40 0 195 302 175 24 chr13 24165682 24165808 -95579090 - MIR SINE MIR -35 227 83 266 230 95 0 chr13 24166198 24166272 -95578626 + MER103 DNA DNA 74 154 -12 1769 169 3 7 chr13 24166304 24166606 -95578292 + AluJb SINE Alu 1 301 -11 1416 192 8 4 chr13 24167088 24167349 -95577549 + AluJb SINE Alu 1 262 -50 609 193 12 28 chr13 24167350 24167603 -95577295 + GA-rich Low_complexity Low_complexity 1 249 0 358 204 20 10 chr13 24167614 24167712 -95577186 + GA-rich Low_complexity Low_complexity 4 102 0 470 285 43 38 chr13 24170161 24170347 -95574551 - L3b LINE CR1 -180 1403 1217 214 296 0 19 chr13 24170407 24170461 -95574437 + L2 LINE L2 3219 3271 -1 344 349 66 0 chr13 24170785 24170937 -95573961 - L2 LINE L2 -10 3262 3101 2264 121 0 0 chr13 24170937 24171234 -95573664 - AluSq SINE Alu -16 297 1 1915 160 0 3 chr13 24171556 24171850 -95573048 - AluJb SINE Alu -13 299 7 3811 139 43 3 chr13 24171959 24172536 -95572362 + MER7C DNA MER2_type 2 601 -1 927 230 72 5 chr13 24172853 24173062 -95571836 - MER58A DNA MER1_type -1 223 1 204 280 53 83 chr13 24173415 24173547 -95571351 - MIR SINE MIR -45 217 90 1046 158 18 0 chr13 24173795 24173966 -95570932 - AluJb SINE Alu -12 300 127 2429 83 0 6 chr13 24173966 24174279 -95570619 - AluY SINE Alu 0 311 1 2538 78 0 0 chr13 24176323 24176631 -95568267 + AluY SINE Alu 1 308 -3 1579 180 37 27 chr13 24177677 24177972 -95566926 - AluJo SINE Alu -14 298 1 2089 142 51 3 chr13 24178282 24178614 -95566284 - MER7A DNA MER2_type 0 346 1 210 37 0 0 chr13 24178951 24178978 -95565920 + (TC)n Simple_repeat Simple_repeat 2 28 0 2148 154 61 50 chr13 24179271 24179733 -95565165 + MLT1C LTR MaLR 1 467 0 2242 72 0 31 chr13 24181221 24181543 -95563355 - AluSx SINE Alu 0 313 1 191 261 130 22 chr13 24183985 24184077 -95560821 - MIR SINE MIR -52 210 109 691 196 8 8 chr13 24186176 24186332 -95558566 + FLAM_A SINE Alu 1 133 0 1573 125 52 66 chr13 24187731 24188019 -95556879 - AluJo SINE Alu -3 309 26 234 244 119 62 chr13 24188095 24188288 -95556610 - L1ME4a LINE L1 -60 6061 5858 341 141 0 94 chr13 24188288 24188352 -95556546 + AluJ/FLAM SINE Alu 1 58 -244 2037 131 24 0 chr13 24188474 24188765 -95556133 + AluSx SINE Alu 1 298 -14 610 117 0 29 chr13 24188905 24189008 -95555890 - FRAM SINE Alu -7 169 70 29 0 0 0 chr13 24190980 24191009 -95553889 + AT_rich Low_complexity Low_complexity 1 29 0 2022 130 0 10 chr13 24191920 24192212 -95552686 + AluSg SINE Alu 1 289 -21 429 145 0 0 chr13 24192620 24192696 -95552202 - AluJ/FRAM SINE Alu -10 302 227 586 301 12 45 chr13 24192823 24193069 -95551829 + MIR SINE MIR 3 240 -22 198 0 0 0 chr13 24193799 24193821 -95551077 + (TG)n Simple_repeat Simple_repeat 1 22 0 359 202 12 0 chr13 24195270 24195354 -95549544 + GA-rich Low_complexity Low_complexity 2 86 0 696 197 0 0 chr13 24197792 24197914 -95546984 + FLAM_A SINE Alu 1 122 -11 278 173 58 19 chr13 24197915 24198019 -95546879 + (TA)n Simple_repeat Simple_repeat 1 108 0 2254 123 0 22 chr13 24198275 24198592 -95546306 + AluSx SINE Alu 1 310 -2 464 230 164 7 chr13 24200817 24200969 -95543929 + MER5A DNA MER1_type 14 189 0 1890 229 65 49 chr13 24202516 24203067 -95541831 - MER119 DNA MER1_type -21 562 3 223 356 85 5 chr13 24203496 24203684 -95541214 + L3 LINE CR1 849 1051 -526 361 282 41 47 chr13 24203721 24203891 -95541007 + L3 LINE CR1 1156 1324 -253 5218 73 30 6 chr13 24206292 24206967 -95537931 + LTR8 LTR ERV1 1 691 0 258 106 0 0 chr13 24209023 24209070 -95535828 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2032 109 0 21 chr13 24209070 24209355 -95535543 - AluSq SINE Alu -34 279 1 228 244 0 0 chr13 24209985 24210075 -95534823 + (TG)n Simple_repeat Simple_repeat 2 91 0 197 247 10 0 chr13 24210110 24210207 -95534691 + (TG)n Simple_repeat Simple_repeat 2 99 0 3274 100 15 0 chr13 24210413 24210874 -95534024 + L1PA10 LINE L1 5701 6168 0 291 377 62 0 chr13 24212323 24212469 -95532429 + MER91A DNA MER1_type 17 171 -25 322 220 14 113 chr13 24215263 24215404 -95529494 + L1MB3 LINE L1 6050 6176 -7 1680 186 46 15 chr13 24216906 24217233 -95527665 - MER1B DNA MER1_type 0 337 1 2329 53 0 28 chr13 24217290 24217574 -95527324 + AluY SINE Alu 16 291 -20 1999 141 3 20 chr13 24217783 24218089 -95526809 - AluSx SINE Alu -11 301 1 1202 187 72 75 chr13 24218809 24219025 -95525873 + MER2 DNA MER2_type 1 218 -127 2139 101 3 3 chr13 24219025 24219336 -95525562 - AluSq SINE Alu 0 311 1 1202 187 72 75 chr13 24219336 24219439 -95525459 + MER2 DNA MER2_type 218 320 -25 189 206 48 16 chr13 24219934 24219997 -95524901 - L2 LINE L2 -251 3021 2957 2298 93 3 0 chr13 24221057 24221347 -95523551 - AluSg SINE Alu -8 302 12 1809 110 0 4 chr13 24221412 24221648 -95523250 + AluSx SINE Alu 1 235 -77 25 0 0 0 chr13 24221663 24221688 -95523210 + AT_rich Low_complexity Low_complexity 1 25 0 1658 218 34 81 chr13 24222985 24223050 -95521848 - L1ME1 LINE L1 -2 6164 6097 2058 101 3 82 chr13 24223050 24223378 -95521520 - AluSq SINE Alu -11 302 1 1658 218 34 81 chr13 24223378 24223866 -95521032 - L1ME1 LINE L1 -69 6097 5637 336 304 31 12 chr13 24224408 24224569 -95520329 + MIR SINE MIR 79 242 -20 347 327 65 6 chr13 24224674 24224842 -95520056 - MIR SINE MIR -51 211 34 5923 132 21 7 chr13 24225666 24226705 -95518193 + L1PA13 LINE L1 4270 5347 -816 1892 148 22 29 chr13 24226705 24227016 -95517882 + AluJb SINE Alu 1 309 -3 5923 132 21 7 chr13 24227016 24227824 -95517074 + L1PA13 LINE L1 5347 6142 -21 411 21 0 0 chr13 24227824 24227872 -95517026 + (CA)n Simple_repeat Simple_repeat 2 49 0 1484 160 65 44 chr13 24228926 24229219 -95515679 + AluJo SINE Alu 3 301 -11 455 172 16 16 chr13 24229232 24229354 -95515544 + GA-rich Low_complexity Low_complexity 3 124 0 284 304 8 32 chr13 24229802 24229927 -95514971 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 1248 227 50 59 chr13 24230530 24230988 -95513910 + L1ME1 LINE L1 5704 6157 -9 360 0 0 0 chr13 24231116 24231156 -95513742 + (CA)n Simple_repeat Simple_repeat 2 41 0 2184 111 3 7 chr13 24232247 24232544 -95512354 - AluSx SINE Alu -16 296 1 1350 105 51 43 chr13 24233184 24233281 -95511617 + L1MA3 LINE L1 6047 6142 -163 2321 101 0 0 chr13 24233281 24233578 -95511320 + AluSq SINE Alu 1 297 -16 1350 105 51 43 chr13 24233578 24233737 -95511161 + L1MA3 LINE L1 6142 6305 0 35 0 0 0 chr13 24233737 24233772 -95511126 + AT_rich Low_complexity Low_complexity 1 35 0 490 94 47 24 chr13 24235102 24235187 -95509711 - MER34 LTR ERV1 0 542 456 810 84 0 9 chr13 24235191 24235298 -95509600 + FLAM_A SINE Alu 24 129 -13 2159 183 27 5 chr13 24235298 24235740 -95509158 - MER34 LTR ERV1 -64 478 27 585 258 91 45 chr13 24236294 24236515 -95508383 - MIR SINE MIR 0 262 32 195 283 43 0 chr13 24237793 24237839 -95507059 + L2 LINE L2 363 410 -2904 2828 82 0 11 chr13 24238012 24238391 -95506507 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr13 24239758 24239794 -95505104 + AT_rich Low_complexity Low_complexity 1 36 0 1860 167 0 26 chr13 24241522 24241827 -95503071 + AluJb SINE Alu 1 297 -15 1852 142 87 3 chr13 24242418 24242885 -95502013 - LTR31 LTR ERV1 -60 559 1 2406 189 17 14 chr13 24242923 24243847 -95501051 - L1M4 LINE L1 -477 5707 4786 1630 164 26 56 chr13 24244429 24244612 -95500286 - AluJo SINE Alu -16 296 124 2279 114 0 0 chr13 24244612 24244909 -95499989 + AluSx SINE Alu 1 297 -15 1630 164 26 56 chr13 24244909 24245030 -95499868 - AluJo SINE Alu -188 124 1 978 164 26 11 chr13 24245445 24245634 -95499264 + L1PA16 LINE L1 5959 6150 -16 291 208 0 52 chr13 24245689 24245766 -95499132 + L2 LINE L2 2330 2402 -912 184 294 56 86 chr13 24245797 24245994 -95498904 + L2 LINE L2 2826 3016 -256 414 263 26 51 chr13 24246002 24246158 -95498740 + L2 LINE L2 3160 3311 -2 26 30 0 0 chr13 24246870 24246903 -95497995 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 24247668 24247705 -95497193 + AT_rich Low_complexity Low_complexity 1 37 0 1702 180 3 37 chr13 24247864 24248164 -95496734 + AluJb SINE Alu 1 290 -22 431 289 75 19 chr13 24248170 24248488 -95496410 - HAL1 LINE L1 -143 2364 2029 271 271 182 6 chr13 24248584 24248765 -95496133 - HAL1 LINE L1 -607 1900 1688 252 250 61 45 chr13 24248780 24248912 -95495986 + Charlie2 DNA MER1_type 2019 2152 -710 * 389 188 134 38 chr13 24248906 24249092 -95495806 + Charlie2 DNA MER1_type 2401 2604 -258 3136 62 60 0 chr13 24249093 24249526 -95495372 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 24249526 24249598 -95495300 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 24249624 24249679 -95495219 - L2 LINE L2 -103 3169 3117 719 92 46 35 chr13 24249679 24249853 -95495045 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 24249984 24250374 -95494524 + MLT2D LTR ERVL 1 362 -52 261 57 0 0 chr13 24250383 24250418 -95494480 + (CA)n Simple_repeat Simple_repeat 1 35 0 673 171 62 21 chr13 24250423 24250616 -95494282 + Charlie2 DNA MER1_type 2594 2794 -68 3766 186 64 30 chr13 24250641 24251029 -95493869 + L1MB3 LINE L1 4598 4971 -1212 1809 147 0 58 chr13 24251029 24251342 -95493556 + AluJb SINE Alu 1 295 -17 3766 186 64 30 chr13 24251342 24252486 -95492412 + L1MB3 LINE L1 4971 6173 -10 337 362 88 27 chr13 24252673 24253002 -95491896 + L2 LINE L2 2920 3268 -4 1613 181 57 10 chr13 24253978 24254276 -95490622 - AluJb SINE Alu 0 312 1 376 308 51 10 chr13 24254733 24254943 -95489955 + MIR SINE MIR 38 254 -8 293 359 0 0 chr13 24255064 24255156 -95489742 - L2 LINE L2 -19 3294 3203 212 175 0 0 chr13 24255946 24255986 -95488912 + T-rich Low_complexity Low_complexity 3 42 0 999 221 38 14 chr13 24257976 24258189 -95486709 - MER20 DNA MER1_type -1 218 1 245 275 190 16 chr13 24258704 24258951 -95485947 - L1MC/D LINE L1 -2265 5543 5254 267 312 135 18 chr13 24259330 24259500 -95485398 - L2 LINE L2 -369 2945 2756 24 0 0 0 chr13 24259714 24259738 -95485160 + AT_rich Low_complexity Low_complexity 1 24 0 399 254 53 77 chr13 24259820 24260158 -95484740 - HAL1b LINE L1 -841 507 178 2087 129 0 3 chr13 24260273 24260567 -95484331 - AluSx SINE Alu -19 293 1 2028 148 3 10 chr13 24261441 24261752 -95483146 - AluJo SINE Alu -1 311 3 1072 184 79 44 chr13 24262221 24262536 -95482362 + L1MA7 LINE L1 5966 6291 0 219 281 146 73 chr13 24262735 24262831 -95482067 - L2 LINE L2 -25 3247 3145 2259 98 0 16 chr13 24263391 24263707 -95481191 - AluSx SINE Alu -1 311 1 477 0 0 0 chr13 24265964 24266017 -95478881 + (TA)n Simple_repeat Simple_repeat 1 53 0 192 260 83 73 chr13 24266110 24266176 -95478722 - L2 LINE L2 0 3272 3206 344 306 87 35 chr13 24266176 24266306 -95478592 + MER5A DNA MER1_type 1 144 -45 1715 158 14 28 chr13 24266306 24266597 -95478301 - AluJb SINE Alu -14 298 12 344 306 87 35 chr13 24266597 24266639 -95478259 + MER5A DNA MER1_type 144 182 -7 523 229 76 111 chr13 24266921 24267318 -95477580 - L1MC4 LINE L1 -9 8033 7651 2350 93 3 0 chr13 24267507 24267808 -95477090 - AluY SINE Alu -9 302 1 2213 128 0 0 chr13 24267856 24268162 -95476736 + AluSx SINE Alu 1 306 -6 211 343 135 27 chr13 24269417 24269831 -95475067 + L2 LINE L2 2075 2533 -781 557 185 11 0 chr13 24269836 24269928 -95474970 - FLAM_A SINE Alu -49 93 1 263 287 37 29 chr13 24270228 24270364 -95474534 + Charlie2 DNA MER1_type 170 306 -2556 435 227 136 23 chr13 24270670 24270846 -95474052 + Charlie2a DNA MER1_type 1467 1662 -1200 1202 268 31 19 chr13 24270918 24271404 -95473494 + Charlie2a DNA MER1_type 1661 2152 -710 389 188 134 38 chr13 24271398 24271584 -95473314 + Charlie2a DNA MER1_type 2401 2604 -258 * 3136 62 60 0 chr13 24271585 24272018 -95472880 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 24272018 24272090 -95472808 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 24272116 24272171 -95472727 - L2 LINE L2 -103 3169 3117 755 84 34 50 chr13 24272171 24272350 -95472548 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 24272481 24272871 -95472027 + MLT2D LTR ERVL 1 362 -52 297 51 0 0 chr13 24272880 24272919 -95471979 + (CA)n Simple_repeat Simple_repeat 1 39 0 643 180 57 21 chr13 24272924 24273118 -95471780 + Charlie2a DNA MER1_type 2594 2794 -68 1394 212 40 52 chr13 24273143 24273534 -95471364 + L1M4 LINE L1 4598 4985 -1161 1809 147 0 58 chr13 24273534 24273847 -95471051 + AluJb SINE Alu 1 295 -17 1394 212 40 52 chr13 24273847 24273875 -95471023 + L1M4 LINE L1 4985 5012 -1134 659 303 87 73 chr13 24274002 24275032 -95469866 + L1MC4a LINE L1 4001 5045 -1101 405 270 1 0 chr13 24275223 24275368 -95469530 + L1M LINE L1 5277 5423 -868 687 319 60 45 chr13 24275380 24275975 -95468923 + L1MC4a LINE L1 5317 5920 -1888 1235 173 128 12 chr13 24275985 24276228 -95468670 - AluJo SINE Alu -30 282 12 180 0 0 0 chr13 24276276 24276296 -95468602 + (TG)n Simple_repeat Simple_repeat 2 21 0 1649 179 155 29 chr13 24277183 24277454 -95467444 - LTR54B LTR ERV1 -32 466 124 356 0 23 0 chr13 24277454 24277498 -95467400 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1649 179 155 29 chr13 24277498 24277640 -95467258 - LTR54B LTR ERV1 -374 124 1 261 273 34 23 chr13 24277951 24278039 -95466859 + L2 LINE L2 3184 3272 0 423 0 0 0 chr13 24278716 24278763 -95466135 + (CA)n Simple_repeat Simple_repeat 1 47 0 653 73 0 0 chr13 24280059 24280141 -95464757 + L1P LINE L1 2 83 -6063 1056 205 63 14 chr13 24283037 24283376 -95461522 - MSTD LTR MaLR 0 396 1 2231 104 19 0 chr13 24283685 24283992 -95460906 + AluSq SINE Alu 1 313 0 484 140 0 20 chr13 24283995 24284095 -95460803 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 1700 218 19 14 chr13 24284653 24285016 -95459882 + MLT1A1 LTR MaLR 1 365 0 2265 106 0 0 chr13 24285529 24285821 -95459077 - AluSg SINE Alu -18 292 1 24 0 0 0 chr13 24286876 24286900 -95457998 + AT_rich Low_complexity Low_complexity 1 24 0 2391 90 3 0 chr13 24287186 24287487 -95457411 + AluSq SINE Alu 1 302 -11 417 305 89 39 chr13 24287503 24287785 -95457113 - L2 LINE L2 -35 3237 2942 335 200 0 0 chr13 24288906 24288966 -95455932 - MLT1J2 LTR MaLR -45 405 346 1694 255 30 30 chr13 24288984 24289517 -95455381 + MER74B LTR ERVL 56 588 -34 400 226 69 2 chr13 24289622 24289761 -95455137 - MLT1J2 LTR MaLR -229 180 36 2337 90 0 3 chr13 24292592 24292891 -95452007 + AluSx SINE Alu 1 298 -14 949 156 58 40 chr13 24293127 24293300 -95451598 - FRAM SINE Alu -1 175 1 1224 168 28 5 chr13 24293465 24293679 -95451219 + MER20 DNA MER1_type 1 219 0 837 130 0 3 chr13 24293988 24294211 -95450687 + AluSq SINE Alu 2 297 -16 477 243 56 21 chr13 24294220 24294364 -95450534 + MIR SINE MIR 73 221 -41 1972 127 28 11 chr13 24294406 24294689 -95450209 + AluSx SINE Alu 1 288 -24 222 37 0 0 chr13 24294689 24294716 -95450182 + (TA)n Simple_repeat Simple_repeat 1 27 0 288 266 108 29 chr13 24295516 24295620 -95449278 + L2 LINE L2 2392 2511 -803 1532 163 83 28 chr13 24295620 24295908 -95448990 - AluJo SINE Alu -8 304 1 288 266 108 29 chr13 24295908 24295942 -95448956 + L2 LINE L2 2511 2541 -773 726 150 92 0 chr13 24295972 24296092 -95448806 + MER3 DNA MER1_type 3 133 -76 4168 167 38 60 chr13 24296094 24296261 -95448637 - L1MB7 LINE L1 -8 6176 6007 2489 84 0 0 chr13 24296261 24296560 -95448338 + AluSx SINE Alu 1 299 -13 4168 167 38 60 chr13 24296560 24297569 -95447329 - L1MB7 LINE L1 -177 6007 5024 1538 185 19 0 chr13 24297569 24297839 -95447059 + L1PB4 LINE L1 5881 6155 -1 4168 167 38 60 chr13 24297839 24297872 -95447026 - L1MB7 LINE L1 -1160 5024 4992 816 147 78 11 chr13 24297878 24298069 -95446829 - L1MB4 LINE L1 -1 6179 5976 389 216 11 0 chr13 24298069 24298157 -95446741 + MER3 DNA MER1_type 121 209 0 559 306 76 20 chr13 24298173 24298634 -95446264 + L2 LINE L2 2595 3073 -240 1027 170 0 6 chr13 24298665 24298836 -95446062 - FRAM SINE Alu -10 166 1 2299 114 10 0 chr13 24298854 24299162 -95445736 - AluSx SINE Alu 0 312 2 476 257 131 23 chr13 24299172 24299347 -95445551 + L2 LINE L2 3119 3312 -1 1361 157 25 58 chr13 24300075 24300216 -95444682 + L1PA16 LINE L1 5896 6026 -140 2247 97 0 0 chr13 24300216 24300537 -95444361 + AluSg1 SINE Alu 2 322 0 1361 157 25 58 chr13 24300537 24300668 -95444230 + L1PA16 LINE L1 6026 6160 -6 205 171 0 0 chr13 24300850 24300885 -95444013 + A-rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 24301256 24301276 -95443622 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 507 307 70 18 chr13 24302434 24302776 -95442122 - L1ME4a LINE L1 -52 6069 5710 588 241 69 46 chr13 24302797 24303058 -95441840 - L2 LINE L2 -588 2726 2460 438 281 131 14 chr13 24304449 24304670 -95440228 + MER115 DNA AcHobo 1 247 -446 229 290 121 40 chr13 24307494 24307651 -95437247 + MIR SINE MIR 32 196 -63 257 174 14 0 chr13 24307896 24307965 -95436933 + (CA)n Simple_repeat Simple_repeat 1 70 0 334 224 51 10 chr13 24307967 24308065 -95436833 + MER5A DNA MER1_type 88 189 0 2260 66 0 0 chr13 24310112 24310386 -95434512 + AluY SINE Alu 33 306 -5 4407 128 38 46 chr13 24310964 24311724 -95433174 - LTR1 LTR ERV1 0 785 32 566 271 181 52 chr13 24313314 24313739 -95431159 + MLT1K LTR MaLR 17 496 -92 1405 206 41 16 chr13 24314007 24314323 -95430575 - MER33 DNA MER1_type 0 324 1 2314 70 39 0 chr13 24314933 24315219 -95429679 - AluY SINE Alu -14 297 1 210 302 215 19 chr13 24315287 24315598 -95429300 + L2 LINE L2 2591 2962 -352 3098 179 41 80 chr13 24315792 24316556 -95428342 + L1MB2 LINE L1 5438 6171 0 25 0 0 0 chr13 24318310 24318335 -95426563 + AT_rich Low_complexity Low_complexity 1 25 0 1171 60 7 0 chr13 24319626 24319776 -95425122 - MER41A LTR ERV1 0 554 404 * 1924 89 4 4 chr13 24319774 24320033 -95424865 - MER41A LTR ERV1 -295 259 1 390 42 0 0 chr13 24322871 24322919 -95421979 + (GA)n Simple_repeat Simple_repeat 1 48 0 465 198 10 0 chr13 24323045 24323141 -95421757 + MER5A DNA MER1_type 9 105 -84 627 51 0 0 chr13 24324187 24324266 -95420632 + (ATG)n Simple_repeat Simple_repeat 1 79 0 239 289 48 0 chr13 24324347 24324430 -95420468 - MIR SINE MIR -135 127 41 1275 115 22 0 chr13 24324552 24324735 -95420163 + AluSq SINE Alu 121 307 -6 2374 108 0 0 chr13 24326398 24326705 -95418193 - AluSq SINE Alu -6 307 1 660 216 52 71 chr13 24328312 24328580 -95416318 + L1ME3A LINE L1 5903 6165 -5 2253 89 10 0 chr13 24328637 24328928 -95415970 - AluSq SINE Alu -19 294 1 2113 116 7 3 chr13 24329871 24330164 -95414734 + AluSp SINE Alu 1 294 -19 261 0 0 0 chr13 24330538 24330567 -95414331 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 24330567 24330597 -95414301 + AT_rich Low_complexity Low_complexity 1 30 0 2320 99 0 3 chr13 24331173 24331476 -95413422 + AluSg SINE Alu 1 302 -8 2118 106 0 3 chr13 24332610 24332916 -95411982 - AluSx SINE Alu 0 305 1 2215 79 41 7 chr13 24333277 24333567 -95411331 - AluY SINE Alu -10 301 2 366 42 0 0 chr13 24333749 24333797 -95411101 + (TC)n Simple_repeat Simple_repeat 1 48 0 213 175 0 0 chr13 24333873 24333913 -95410985 + CT-rich Low_complexity Low_complexity 2 41 0 44786 37 5 1 chr13 24334341 24340470 -95404428 - L1PA4 LINE L1 0 6155 2 413 311 28 38 chr13 24340907 24341225 -95403673 - L2 LINE L2 -373 2941 2627 2614 181 71 68 chr13 24341317 24342037 -95402861 - MER72 LTR ERV1 0 722 1 34 55 0 0 chr13 24342759 24342814 -95402084 + AT_rich Low_complexity Low_complexity 1 55 0 186 240 56 104 chr13 24344042 24344167 -95400731 + L2 LINE L2 2203 2321 -993 297 0 0 0 chr13 24344232 24344265 -95400633 + (CA)n Simple_repeat Simple_repeat 1 33 0 675 120 0 0 chr13 24344318 24344443 -95400455 + AluSp/q SINE Alu 193 317 0 503 270 173 17 chr13 24344700 24344989 -95399909 + L2 LINE L2 2627 2960 -354 238 249 142 53 chr13 24345073 24345242 -95399656 + L2 LINE L2 3130 3313 0 357 310 7 45 chr13 24345244 24345290 -95399608 + MER5B DNA MER1_type 30 76 -102 1303 193 9 0 chr13 24345290 24345523 -95399375 - MER46A DNA MER2_type 0 236 2 357 310 7 45 chr13 24345523 24345631 -95399267 + MER5B DNA MER1_type 76 178 0 180 0 0 0 chr13 24346708 24346728 -95398170 + (TC)n Simple_repeat Simple_repeat 2 21 0 1991 69 3 73 chr13 24348250 24348539 -95396359 + AluSx SINE Alu 11 279 -33 353 125 0 0 chr13 24348542 24348590 -95396308 + AluS SINE Alu 230 277 -23 349 118 0 0 chr13 24348593 24348685 -95396213 + AluSc SINE Alu 230 321 0 1033 174 25 45 chr13 24350386 24350717 -95394181 + L1MA6 LINE L1 5997 6298 -2 1904 173 48 41 chr13 24350948 24351411 -95393487 - L1MB4 LINE L1 -39 6141 5676 21 0 0 0 chr13 24352215 24352236 -95392662 + AT_rich Low_complexity Low_complexity 1 21 0 3827 169 36 12 chr13 24353176 24353448 -95391450 + L1MA7 LINE L1 5509 5773 -518 369 0 0 0 chr13 24353448 24353489 -95391409 + (CA)n Simple_repeat Simple_repeat 2 42 0 3827 169 36 12 chr13 24353489 24353971 -95390927 + L1MA7 LINE L1 5773 6281 -10 213 266 121 32 chr13 24354213 24354337 -95390561 + MIR SINE MIR 15 149 -113 267 360 22 14 chr13 24355162 24355301 -95389597 + MIR3 SINE MIR 43 182 -26 279 290 117 61 chr13 24355316 24355744 -95389154 + L2 LINE L2 1931 2382 -932 582 268 199 35 chr13 24356558 24356961 -95387937 - LTR33A LTR ERVL 0 523 55 189 173 19 39 chr13 24357095 24357147 -95387751 + L2 LINE L2 3262 3312 -1 239 304 72 0 chr13 24357910 24357979 -95386919 - MIR3 SINE MIR -26 182 109 180 77 0 0 chr13 24358575 24358601 -95386297 + (TTCCC)n Simple_repeat Simple_repeat 2 27 0 299 308 76 22 chr13 24358717 24358914 -95385984 - MIR SINE MIR -54 208 4 1577 174 0 71 chr13 24361069 24361379 -95383519 - AluJo SINE Alu -23 289 2 1800 135 35 7 chr13 24362108 24362390 -95382508 + AluJb SINE Alu 21 310 -2 2232 103 3 22 chr13 24362628 24362939 -95381959 + AluSg SINE Alu 1 305 -5 2317 181 42 2 chr13 24365511 24365941 -95378957 - MLT1C LTR MaLR 0 467 21 2671 102 6 3 chr13 24365980 24366342 -95378556 + THE1B LTR MaLR 1 363 -1 2368 76 0 10 chr13 24366544 24366847 -95378051 + AluY SINE Alu 1 300 -11 2318 95 10 0 chr13 24367023 24367318 -95377580 - AluSq SINE Alu -15 298 1 341 333 26 19 chr13 24367734 24367890 -95377008 + L2 LINE L2 3116 3272 0 842 161 0 0 chr13 24368010 24368134 -95376764 + FLAM_C SINE Alu 1 124 -19 24 0 0 0 chr13 24368140 24368164 -95376734 + AT_rich Low_complexity Low_complexity 1 24 0 689 221 0 0 chr13 24370113 24370253 -95374645 + Tigger4(Zombi) DNA MER2_type 1 140 -2591 1504 125 141 4 chr13 24370869 24371125 -95373773 + AluJo SINE Alu 1 291 -21 438 305 155 29 chr13 24371442 24372045 -95372853 + L2 LINE L2 2632 3311 -2 1701 175 53 50 chr13 24372351 24372711 -95372187 + MER46B DNA MER2_type 1 236 0 2387 97 0 3 chr13 24373057 24373367 -95371531 + AluSq SINE Alu 1 309 -4 2125 115 0 26 chr13 24374143 24374447 -95370451 - AluSx SINE Alu -16 296 1 229 228 0 18 chr13 24374779 24374836 -95370062 + MIR SINE MIR 195 250 -12 307 325 76 30 chr13 24375714 24375951 -95368947 + MIR SINE MIR 9 256 -6 242 289 74 37 chr13 24376310 24376445 -95368453 - MIR SINE MIR -26 236 97 2028 170 84 5 chr13 24376730 24377124 -95367774 - MSTB LTR MaLR -1 425 1 204 200 0 0 chr13 24378617 24378672 -95366226 + T-rich Low_complexity Low_complexity 1 55 0 2416 63 0 0 chr13 24378863 24379164 -95365734 + AluY SINE Alu 4 304 -7 22 35 0 0 chr13 24379209 24379238 -95365660 + AT_rich Low_complexity Low_complexity 1 29 0 2133 117 0 0 chr13 24380135 24380435 -95364463 - AluSx SINE Alu -12 300 1 276 283 198 6 chr13 24382072 24382249 -95362649 + MIR SINE MIR 13 223 -39 344 266 99 17 chr13 24383397 24383618 -95361280 - L1ME2 LINE L1 -298 5866 5629 574 237 84 42 chr13 24383623 24383718 -95361180 - L1ME2 LINE L1 -913 5233 5143 2017 114 0 7 chr13 24383718 24384016 -95360882 - AluSx SINE Alu -16 296 1 574 237 84 42 chr13 24384016 24384182 -95360716 - L1ME2 LINE L1 -1003 5143 4961 1824 179 33 15 chr13 24384604 24384940 -95359958 + MER7A DNA MER2_type 2 341 -5 2019 104 35 0 chr13 24385518 24385807 -95359091 + AluSx SINE Alu 1 299 -13 1316 163 26 0 chr13 24385816 24386043 -95358855 + 7SLRNA srpRNA srpRNA 51 283 -37 26 0 0 0 chr13 24386062 24386088 -95358810 + AT_rich Low_complexity Low_complexity 1 26 0 468 277 54 14 chr13 24386111 24386259 -95358639 + MIR SINE MIR 24 177 -85 442 264 98 31 chr13 24387338 24387501 -95357397 - MIR SINE MIR -87 175 2 2138 115 0 0 chr13 24388035 24388340 -95356558 - AluSx SINE Alu -7 305 1 749 209 173 5 chr13 24389632 24389823 -95355075 - MIR SINE MIR -4 258 36 1158 256 33 39 chr13 24389828 24390191 -95354707 + MLT1A2 LTR MaLR 1 361 -13 1987 134 0 0 chr13 24391100 24391392 -95353506 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 24391972 24391995 -95352903 + AT_rich Low_complexity Low_complexity 1 23 0 550 176 0 0 chr13 24392012 24392114 -95352784 - HY1 scRNA scRNA -10 102 1 2690 223 55 18 chr13 24392252 24392920 -95351978 + L1ME2 LINE L1 5456 6148 -16 1459 179 36 17 chr13 24393663 24393964 -95350934 - AluJo SINE Alu -5 307 1 216 0 0 0 chr13 24394815 24394839 -95350059 + (A)n Simple_repeat Simple_repeat 1 24 0 12386 88 9 2 chr13 24394851 24396439 -95348459 + L1PA7 LINE L1 8 1606 -4855 16670 89 5 41 chr13 24396439 24399604 -95345294 + L1PA7 LINE L1 3338 6469 0 280 75 132 0 chr13 24400196 24400249 -95344649 - L1MA4A LINE L1 -5 6298 6239 401 296 68 14 chr13 24401001 24401221 -95343677 - L1ME4a LINE L1 -296 5825 5594 1002 197 0 5 chr13 24403154 24403347 -95341551 + AluJo SINE Alu 121 312 0 2339 84 0 3 chr13 24404406 24404716 -95340182 + AluSc SINE Alu 1 309 0 2145 99 3 3 chr13 24406170 24406463 -95338435 + AluSx SINE Alu 1 293 -19 184 311 94 28 chr13 24411014 24411120 -95333778 - L2 LINE L2 -2 3311 3199 300 269 180 30 chr13 24411822 24411989 -95332909 + MIR SINE MIR 40 231 -31 352 227 118 36 chr13 24415372 24415482 -95329416 + MIR SINE MIR 16 134 -74 2267 62 0 29 chr13 24416584 24416890 -95328008 + AluY SINE Alu 1 297 -14 382 269 32 118 chr13 24416892 24417360 -95327538 - L1MC5 LINE L1 -32 7929 7502 592 224 8 8 chr13 24417367 24417515 -95327383 - FLAM_A SINE Alu 0 142 6 218 259 24 35 chr13 24417618 24417703 -95327195 - MIR SINE MIR -62 146 63 2068 95 0 11 chr13 24418073 24418319 -95326579 - AluSg1 SINE Alu 0 305 61 180 0 0 0 chr13 24418319 24418339 -95326559 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 2068 95 0 11 chr13 24418339 24418400 -95326498 - AluSg1 SINE Alu -244 61 1 231 36 0 0 chr13 24418923 24418951 -95325947 + (TTG)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr13 24418965 24418996 -95325902 + AT_rich Low_complexity Low_complexity 1 31 0 2326 48 3 0 chr13 24419952 24420242 -95324656 + AluY SINE Alu 1 291 -20 1864 203 60 21 chr13 24421146 24421580 -95323318 - MER39 LTR ERV1 0 707 257 298 136 17 71 chr13 24421553 24421654 -95323244 - MER39 LTR ERV1 -560 93 1 * 250 311 189 5 chr13 24421654 24421844 -95323054 - L2 LINE L2 -285 3028 2804 1018 184 0 6 chr13 24422017 24422191 -95322707 + FAM SINE Alu 1 173 -2 26 50 0 0 chr13 24422934 24422974 -95321924 + AT_rich Low_complexity Low_complexity 1 40 0 24 96 0 0 chr13 24423137 24423210 -95321688 + AT_rich Low_complexity Low_complexity 1 73 0 1816 136 0 14 chr13 24425245 24425540 -95319358 + AluJo SINE Alu 3 293 -19 1967 144 20 0 chr13 24425614 24425920 -95318978 + AluSx SINE Alu 1 312 0 276 317 38 32 chr13 24426728 24426914 -95317984 - MLT1L LTR MaLR 0 615 429 4577 133 22 13 chr13 24427353 24428128 -95316770 - L1MA9 LINE L1 0 6312 5531 21 36 0 0 chr13 24428325 24428353 -95316545 + AT_rich Low_complexity Low_complexity 1 28 0 806 238 161 45 chr13 24431478 24431924 -95312974 - L2 LINE L2 -1 3312 2815 3132 162 34 35 chr13 24432546 24433195 -95311703 - L1MD1 LINE L1 0 6636 5989 338 174 29 14 chr13 24433220 24433289 -95311609 - MLT1H LTR MaLR -54 495 426 505 113 12 0 chr13 24433307 24433387 -95311511 - L1MB7 LINE L1 -21 6163 6083 * 8449 219 46 81 chr13 24433380 24433981 -95310917 - L1MD1 LINE L1 -627 6009 5389 5257 9 0 0 chr13 24433981 24434560 -95310338 - L1PA2 LINE L1 -1 6154 5576 8449 219 46 81 chr13 24434560 24437597 -95307301 - L1MD1 LINE L1 -1247 5389 2504 5091 205 122 40 chr13 24437624 24437809 -95307089 - L1MD1 LINE L1 -4338 2202 2034 2121 127 0 13 chr13 24437809 24437985 -95306913 - AluSx SINE Alu -4 308 136 2283 110 0 0 chr13 24437985 24438276 -95306622 - AluSx SINE Alu -21 291 1 2121 127 0 13 chr13 24438276 24438407 -95306491 - AluSx SINE Alu -176 136 5 5091 205 122 40 chr13 24438407 24439877 -95305021 - L1MD1 LINE L1 -4506 2034 258 221 273 182 0 chr13 24440940 24441039 -95303859 + L2 LINE L2 3153 3269 -3 23 0 0 0 chr13 24441993 24442016 -95302882 + AT_rich Low_complexity Low_complexity 1 23 0 3967 185 51 30 chr13 24442158 24443288 -95301610 - L1MB5 LINE L1 -6 6168 5009 1196 154 24 12 chr13 24443292 24443538 -95301360 - L1MA7 LINE L1 0 6291 6043 2550 70 9 0 chr13 24443538 24443868 -95301030 + L1PA6 LINE L1 5821 6154 0 11831 165 43 9 chr13 24443868 24444141 -95300757 - L1MA7 LINE L1 -233 6058 5796 438 20 0 0 chr13 24444141 24444192 -95300706 + (TG)n Simple_repeat Simple_repeat 2 52 0 11831 165 43 9 chr13 24444192 24446945 -95297953 - L1MA7 LINE L1 -495 5796 2930 4683 224 31 27 chr13 24446946 24448221 -95296677 - L1MB5 LINE L1 -1130 5016 3737 307 289 110 46 chr13 24448871 24449217 -95295681 + L1MEd LINE L1 18 385 -5734 21 57 0 0 chr13 24450398 24450433 -95294465 + AT_rich Low_complexity Low_complexity 1 35 0 1335 280 112 27 chr13 24450450 24451042 -95293856 - MER115 DNA AcHobo -1 692 51 2258 110 3 0 chr13 24451076 24451376 -95293522 + AluSx SINE Alu 1 301 -11 233 351 30 8 chr13 24451452 24451583 -95293315 + MIR3 SINE MIR 64 197 -11 2077 168 37 0 chr13 24452437 24452811 -95292087 - MLT1B LTR MaLR 0 390 3 1928 149 7 14 chr13 24452944 24453240 -95291658 + AluJo SINE Alu 1 294 -18 248 308 17 0 chr13 24453923 24454040 -95290858 + G-rich Low_complexity Low_complexity 1 119 0 2290 117 3 0 chr13 24454685 24454994 -95289904 + AluSq SINE Alu 1 310 -3 438 229 208 0 chr13 24455411 24455523 -95289375 + MIR SINE MIR 31 118 -144 2192 187 17 17 chr13 24455523 24455982 -95288916 - LOR1b LTR ERV1 -2 459 1 438 229 208 0 chr13 24455982 24456061 -95288837 + MIR SINE MIR 118 262 0 191 368 80 6 chr13 24456063 24456226 -95288672 + MIR SINE MIR 66 240 -22 281 294 64 53 chr13 24458144 24458331 -95286567 - MIR3 SINE MIR -12 196 8 210 37 0 0 chr13 24459283 24459310 -95285588 + (TTCTG)n Simple_repeat Simple_repeat 3 29 0 764 196 82 23 chr13 24460013 24460232 -95284666 + MIR SINE MIR 31 262 0 2176 118 0 10 chr13 24460404 24460700 -95284198 + AluSx SINE Alu 1 293 -19 2001 127 0 3 chr13 24465398 24465723 -95279175 + AluSx SINE Alu 3 326 0 1992 125 35 0 chr13 24466208 24466496 -95278402 - AluSg SINE Alu -12 298 1 2091 117 11 3 chr13 24469445 24469727 -95275171 + AluSx SINE Alu 1 284 -28 216 0 0 0 chr13 24469727 24469751 -95275147 + (CAT)n Simple_repeat Simple_repeat 2 25 0 255 242 0 16 chr13 24470634 24470696 -95274202 + MIR SINE MIR 200 260 -2 25 31 0 0 chr13 24471492 24471524 -95273374 + AT_rich Low_complexity Low_complexity 1 32 0 1971 125 24 7 chr13 24472079 24472366 -95272532 - AluSx SINE Alu -11 301 10 291 163 0 0 chr13 24472520 24472569 -95272329 + L2 LINE L2 3264 3312 -1 1672 158 49 3 chr13 24472617 24472902 -95271996 + AluJo SINE Alu 1 298 -14 634 159 146 13 chr13 24473291 24473442 -95271456 - MLT1B LTR MaLR -219 171 1 981 157 120 0 chr13 24473659 24473850 -95271048 - L1MB5 LINE L1 0 6174 5961 716 171 8 16 chr13 24473861 24473984 -95270914 - FLAM_C SINE Alu -21 122 1 3568 166 35 12 chr13 24473984 24474720 -95270178 - L1MB5 LINE L1 -212 5972 5223 24 32 0 0 chr13 24475083 24475114 -95269784 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 24475485 24475516 -95269382 + AT_rich Low_complexity Low_complexity 1 31 0 342 0 0 0 chr13 24477192 24477230 -95267668 + (TG)n Simple_repeat Simple_repeat 2 39 0 2198 121 0 0 chr13 24478776 24479073 -95265825 - AluSx SINE Alu -15 297 1 225 282 0 127 chr13 24479751 24479805 -95265093 + L3 LINE CR1 1480 1539 -38 1167 197 51 91 chr13 24479805 24479978 -95264920 + MER58B DNA MER1_type 2 180 -2240 2435 53 3 41 chr13 24479978 24480297 -95264601 + AluY SINE Alu 1 307 -4 1167 197 51 91 chr13 24480297 24480433 -95264465 + MER58B DNA MER1_type 180 298 -2122 1679 157 3 39 chr13 24480433 24480745 -95264153 - AluJo SINE Alu -11 301 1 1167 197 51 91 chr13 24480745 24480784 -95264114 + MER58B DNA MER1_type 298 337 -4 225 282 0 127 chr13 24480784 24480839 -95264059 + L3 LINE CR1 1539 1575 -2 1941 134 13 10 chr13 24482351 24482658 -95262240 + AluSx SINE Alu 1 308 -4 261 139 0 0 chr13 24484944 24484987 -95259911 + (A)n Simple_repeat Simple_repeat 1 43 0 198 188 0 0 chr13 24487227 24487259 -95257639 + MIR SINE MIR 221 252 -10 4059 128 44 23 chr13 24487267 24487833 -95257065 + L1MA4 LINE L1 5597 6181 -119 2216 115 3 0 chr13 24487833 24488137 -95256761 + AluSg SINE Alu 1 305 -5 4059 128 44 23 chr13 24488137 24488255 -95256643 + L1MA4 LINE L1 6181 6295 -5 648 191 63 74 chr13 24489308 24489356 -95255542 - MER5A DNA MER1_type -2 187 140 2065 146 0 0 chr13 24489356 24489658 -95255240 + AluJb SINE Alu 1 302 -10 648 191 63 74 chr13 24489658 24489798 -95255100 - MER5A DNA MER1_type -49 140 1 1302 163 65 0 chr13 24490047 24490164 -95254734 + AluJo SINE Alu 1 109 -203 423 0 0 0 chr13 24490164 24490211 -95254687 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1302 163 65 0 chr13 24490211 24490308 -95254590 + AluJo SINE Alu 109 229 -83 268 250 0 0 chr13 24490506 24490558 -95254340 + L1ME2 LINE L1 6097 6148 -16 1071 167 162 9 chr13 24490582 24490792 -95254106 + AluY SINE Alu 44 285 -26 1570 162 42 7 chr13 24490823 24491107 -95253791 + AluJb SINE Alu 1 294 -18 2515 80 0 0 chr13 24492532 24492843 -95252055 - AluSx SINE Alu -1 311 1 243 0 0 0 chr13 24493032 24493059 -95251839 + (GA)n Simple_repeat Simple_repeat 2 28 0 759 156 0 0 chr13 24494197 24494329 -95250569 + FRAM SINE Alu 38 169 0 2280 95 0 7 chr13 24495123 24495417 -95249481 + AluSg SINE Alu 1 292 -18 394 271 54 8 chr13 24496416 24496545 -95248353 - L2 LINE L2 -52 3261 3127 354 366 21 7 chr13 24497093 24497235 -95247663 + MIR SINE MIR 22 165 -97 2342 162 80 2 chr13 24497427 24497865 -95247033 - LOR1a LTR ERV1 -25 472 1 2039 120 28 0 chr13 24497927 24498210 -95246688 - AluSq SINE Alu -22 291 1 584 128 43 11 chr13 24498242 24498336 -95246562 - LTR12 LTR ERV1 -229 485 389 329 147 59 88 chr13 24498336 24498438 -95246460 - LTR30 LTR ERV1 -79 643 379 528 206 39 25 chr13 24498439 24498640 -95246258 - LTR12 LTR ERV1 -429 1475 96 247 250 0 0 chr13 24498640 24498692 -95246206 - LTR30 LTR ERV1 -670 52 1 227 301 204 0 chr13 24498738 24498831 -95246067 - L2 LINE L2 -38 3234 3123 394 146 0 0 chr13 24498845 24498913 -95245985 - MLT1G1 LTR MaLR -6 589 476 794 194 0 8 chr13 24498924 24499058 -95245840 + FLAM_A SINE Alu 1 133 0 2667 161 60 39 chr13 24499067 24499637 -95245261 + L1MB3 LINE L1 5595 6176 -7 758 245 155 49 chr13 24499640 24499758 -95245140 - MLT1H1 LTR MaLR -55 540 436 1227 213 135 27 chr13 24499758 24500092 -95244806 + MLT1A2 LTR MaLR 1 370 -4 758 245 155 49 chr13 24500092 24500420 -95244478 - MLT1H1 LTR MaLR -159 436 3 2080 110 3 64 chr13 24501048 24501375 -95243523 - AluSq SINE Alu -2 311 5 1880 185 73 0 chr13 24501993 24502333 -95242565 - MER47A DNA MER2_type 0 366 2 225 280 75 65 chr13 24502405 24502498 -95242400 - L2 LINE L2 -33 3239 3146 2047 138 7 0 chr13 24502717 24503014 -95241884 + AluSq SINE Alu 1 299 -14 205 278 139 78 chr13 24503146 24503326 -95241572 - MIR SINE MIR -49 213 23 1647 170 0 55 chr13 24503349 24503661 -95241237 + AluJo SINE Alu 1 295 -17 432 228 304 35 chr13 24503927 24504423 -95240475 + LTR50 LTR ERVL 1 758 -37 233 176 77 66 chr13 24504428 24504519 -95240379 + L1ME LINE L1 5582 5673 -497 1442 103 0 10 chr13 24504525 24504752 -95240146 - AluSq SINE Alu 0 317 93 641 243 0 0 chr13 24505890 24506026 -95238872 + MIR SINE MIR 122 257 -5 285 355 13 26 chr13 24506229 24506384 -95238514 + L2 LINE L2 3159 3311 -2 433 235 154 15 chr13 24506726 24506862 -95238036 - MIR3 SINE MIR -20 188 34 713 198 0 0 chr13 24507994 24508110 -95236788 + FLAM_A SINE Alu 8 123 -19 214 313 214 10 chr13 24509290 24509482 -95235416 - L2 LINE L2 -1 3312 3082 1341 280 123 23 chr13 24512360 24513025 -95231873 + HAL1 LINE L1 1619 2350 -157 1219 169 9 144 chr13 24513331 24513679 -95231219 + AluJo SINE Alu 2 302 0 494 193 17 8 chr13 24514958 24515145 -95229753 - MER8 DNA MER2_type 0 239 8 1419 181 11 22 chr13 24515696 24515973 -95228925 + AluJb SINE Alu 33 306 -6 1559 170 30 22 chr13 24516197 24516467 -95228431 + AluSx SINE Alu 1 272 -40 22 35 0 0 chr13 24517605 24517634 -95227264 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 24518064 24518092 -95226806 + AT_rich Low_complexity Low_complexity 1 28 0 2426 72 0 28 chr13 24518404 24518724 -95226174 - AluY SINE Alu 0 311 1 514 238 159 9 chr13 24518725 24518939 -95225959 - L1M4 LINE L1 -3744 2402 2157 243 192 0 39 chr13 24519113 24519165 -95225733 - MER3 DNA MER1_type 0 209 160 2752 238 31 14 chr13 24519620 24520329 -95224569 + MER54A LTR ERVL 179 899 -2 435 218 22 3 chr13 24520330 24520435 -95224463 - L1ME2 LINE L1 -324 5840 5737 440 272 6 31 chr13 24520493 24520655 -95224243 - L1ME2 LINE L1 -413 5753 5596 201 39 0 0 chr13 24520661 24520687 -95224211 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1330 235 129 56 chr13 24520795 24521087 -95223811 - L1ME3A LINE L1 -135 6035 5766 1647 186 0 20 chr13 24521087 24521388 -95223510 - AluJo SINE Alu -16 296 2 1330 235 129 56 chr13 24521388 24521739 -95223159 - L1ME3A LINE L1 -404 5766 5319 736 245 108 58 chr13 24521780 24521986 -95222912 - L1ME3A LINE L1 -2828 3318 3124 1647 189 3 3 chr13 24521986 24522287 -95222611 - AluJb SINE Alu -11 301 1 736 245 108 58 chr13 24522287 24522619 -95222279 - L1ME3A LINE L1 -3022 3124 2753 736 197 0 8 chr13 24523078 24523205 -95221693 - FLAM_C SINE Alu -16 127 2 200 308 0 33 chr13 24523454 24523545 -95221353 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 2185 103 31 0 chr13 24523560 24523851 -95221047 - AluSc SINE Alu -9 300 1 357 168 107 92 chr13 24523855 24523986 -95220912 - L1MC4a LINE L1 -1869 5939 5807 1163 254 84 25 chr13 24524189 24524648 -95220250 + MLT1H1 LTR MaLR 2 452 -103 486 221 64 7 chr13 24524798 24524938 -95219960 - MIR SINE MIR -98 164 17 2132 113 0 0 chr13 24525080 24525373 -95219525 + AluJb SINE Alu 1 293 -19 1931 127 74 0 chr13 24525441 24525725 -95219173 + AluSx SINE Alu 3 307 -5 34 0 0 0 chr13 24526413 24526447 -95218451 + AT_rich Low_complexity Low_complexity 1 34 0 1630 190 80 131 chr13 24527684 24528119 -95216779 - L1MC4 LINE L1 -89 7953 7560 1875 136 26 19 chr13 24528119 24528427 -95216471 - AluJb SINE Alu -2 310 1 1630 190 80 131 chr13 24528427 24528632 -95216266 - L1MC4 LINE L1 -482 7560 7346 1594 180 0 33 chr13 24529256 24529556 -95215342 - AluJo SINE Alu -22 290 1 35 41 0 0 chr13 24532124 24532173 -95212725 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 24532231 24532252 -95212646 + AT_rich Low_complexity Low_complexity 1 21 0 201 147 0 0 chr13 24532559 24532593 -95212305 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 2307 105 0 0 chr13 24533775 24534071 -95210827 - AluSx SINE Alu -16 296 1 237 132 0 0 chr13 24534106 24534144 -95210754 + (T)n Simple_repeat Simple_repeat 1 38 0 25 51 0 0 chr13 24534660 24534699 -95210199 + AT_rich Low_complexity Low_complexity 1 39 0 280 394 83 19 chr13 24534784 24535147 -95209751 + L2 LINE L2 2883 3268 -4 1923 113 30 0 chr13 24535383 24535649 -95209249 + AluSx SINE Alu 1 274 -38 333 224 24 0 chr13 24535656 24535741 -95209157 + L1MC4 LINE L1 6614 6700 -1342 195 129 0 0 chr13 24535743 24535774 -95209124 + (TA)n Simple_repeat Simple_repeat 1 31 0 613 264 80 45 chr13 24535774 24535853 -95209045 + L1MEd LINE L1 928 1003 -5263 2248 115 0 7 chr13 24535853 24536158 -95208740 + AluSx SINE Alu 1 303 -9 613 264 80 45 chr13 24536158 24536481 -95208417 + L1MEd LINE L1 1003 1393 -4873 3186 186 31 5 chr13 24536916 24537529 -95207369 - L1MB4 LINE L1 -1 6179 5551 1069 167 45 32 chr13 24537531 24537752 -95207146 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 24538023 24538327 -95206571 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 24538521 24538781 -95206117 - MIR SINE MIR -1 261 1 1508 190 28 24 chr13 24539717 24539783 -95205115 + MER45B DNA AcHobo 38 102 -938 2154 104 20 7 chr13 24539783 24540081 -95204817 - AluSq SINE Alu -11 302 1 1508 190 28 24 chr13 24540081 24540303 -95204595 + MER45B DNA AcHobo 102 327 -713 573 128 12 0 chr13 24540303 24540389 -95204509 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 24540389 24540577 -95204321 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 24540579 24540679 -95204219 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 24541994 24542038 -95202860 + A-rich Low_complexity Low_complexity 1 47 0 498 332 94 0 chr13 24542302 24542525 -95202373 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 24542638 24542676 -95202222 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 24542823 24543057 -95201841 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 24543057 24543353 -95201545 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 24543353 24543561 -95201337 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 24543591 24543904 -95200994 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 24544677 24544727 -95200171 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 24545109 24545405 -95199493 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 24546110 24546230 -95198668 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 24546230 24546482 -95198416 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 24546482 24546629 -95198269 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 24547295 24547474 -95197424 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 24547476 24548020 -95196878 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 24550044 24550123 -95194775 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 24550854 24551161 -95193737 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 24551460 24551632 -95193266 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 24552014 24552112 -95192786 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 24553007 24553053 -95191845 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 24555543 24555722 -95189176 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 24555736 24555856 -95189042 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 24555858 24555928 -95188970 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 24556050 24556358 -95188540 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 24556824 24556903 -95187995 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 24556984 24557189 -95187709 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 24557239 24557326 -95187572 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 24558170 24558215 -95186683 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 24559945 24560033 -95184865 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 24562048 24562286 -95182612 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 24563014 24563101 -95181797 - L2 LINE L2 0 3313 3204 194 361 74 9 chr13 24563157 24563265 -95181633 + L2 LINE L2 3118 3232 -40 25 51 0 0 chr13 24564097 24564136 -95180762 + AT_rich Low_complexity Low_complexity 1 39 0 2370 100 0 0 chr13 24564301 24564600 -95180298 + AluSc SINE Alu 1 299 -10 2157 146 17 14 chr13 24564760 24565117 -95179781 - L1MB7 LINE L1 -9 6175 5818 813 273 174 28 chr13 24565208 24565604 -95179294 - LTR16A1 LTR ERVL -1 456 3 2699 306 77 43 chr13 24565688 24568034 -95176864 - ERVL LTR ERVL -90 4906 2808 371 236 47 8 chr13 24568066 24568193 -95176705 - Charlie5 DNA MER1_type -85 2527 2396 23 33 0 0 chr13 24569916 24569946 -95174952 + AT_rich Low_complexity Low_complexity 1 30 0 2487 59 0 34 chr13 24570512 24570834 -95174064 - AluY SINE Alu 0 311 1 205 170 57 38 chr13 24571014 24571067 -95173831 + L2 LINE L2 3207 3260 -12 2139 142 3 0 chr13 24571303 24571613 -95173285 + AluSx SINE Alu 1 311 -1 467 209 35 61 chr13 24572567 24572682 -95172216 + FLAM_A SINE Alu 3 114 -19 21 0 0 0 chr13 24572685 24572706 -95172192 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 72 0 chr13 24573254 24573379 -95171519 + L2 LINE L2 3168 3301 -12 1642 120 84 22 chr13 24573505 24573779 -95171119 + AluSq SINE Alu 1 291 -22 216 343 135 19 chr13 24574065 24574272 -95170626 + L2 LINE L2 2127 2357 -957 1128 276 138 29 chr13 24575238 24575788 -95169110 - MLT1L LTR MaLR -3 612 3 265 217 42 25 chr13 24575797 24575917 -95168981 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 26 0 0 0 chr13 24575955 24575981 -95168917 + AT_rich Low_complexity Low_complexity 1 26 0 1747 136 0 0 chr13 24576054 24576297 -95168601 + AluSx SINE Alu 1 243 -69 638 135 0 0 chr13 24576297 24576386 -95168512 - AluS SINE Alu -222 90 2 363 265 44 37 chr13 24576425 24576561 -95168337 + L1ME LINE L1 5672 5808 -313 1912 264 39 34 chr13 24576999 24577587 -95167311 - MLT1E LTR MaLR -2 591 1 410 308 65 55 chr13 24578464 24578772 -95166126 + MLT1J2 LTR MaLR 21 331 -119 1844 142 7 4 chr13 24579358 24579632 -95165266 + AluSq SINE Alu 31 305 -8 187 43 0 0 chr13 24579964 24579987 -95164911 + (TTTA)n Simple_repeat Simple_repeat 2 172 0 1893 164 0 3 chr13 24579987 24580271 -95164627 - AluJb SINE Alu -6 306 1 586 266 0 0 chr13 24580865 24580978 -95163920 - MER81 DNA DNA -1 113 1 1890 138 20 20 chr13 24581105 24581402 -95163496 + AluJo SINE Alu 1 297 -15 2409 53 0 0 chr13 24582345 24582670 -95162228 - AluY SINE Alu 0 325 1 691 312 118 30 chr13 24583161 24583805 -95161093 - L1ME4a LINE L1 -96 6025 5314 1726 228 64 67 chr13 24584692 24585382 -95159516 - L1ME4a LINE L1 -1099 5047 4360 * 7061 241 73 43 chr13 24585373 24585704 -95159194 - L1MEc LINE L1 -1542 4673 4353 1899 185 10 31 chr13 24585704 24586094 -95158804 - L1MB7 LINE L1 0 6184 5803 7061 241 73 43 chr13 24586094 24586338 -95158560 - L1MEc LINE L1 -1862 4353 4118 2036 100 57 0 chr13 24586338 24586617 -95158281 - AluY SINE Alu -16 295 1 7061 241 73 43 chr13 24586617 24588324 -95156574 - L1MEc LINE L1 -2097 4118 2463 599 169 16 0 chr13 24588324 24588448 -95156450 - L1MB2 LINE L1 -2 6169 6044 7061 241 73 43 chr13 24588448 24588610 -95156288 - L1MEc LINE L1 -3752 2463 2307 1808 161 0 7 chr13 24588610 24588896 -95156002 - AluSx SINE Alu -26 286 3 7061 241 73 43 chr13 24588896 24590389 -95154509 - L1MEc LINE L1 -3908 2307 656 740 132 8 0 chr13 24590421 24590438 -95154460 - L1MB7 LINE L1 -309 5875 5860 1626 119 5 0 chr13 24590438 24590657 -95154241 + AluSg/x SINE Alu 73 292 -20 740 132 8 0 chr13 24590657 24590773 -95154125 - L1MB7 LINE L1 -324 5860 5759 244 281 173 43 chr13 24592164 24592303 -95152595 - MER5B DNA MER1_type -1 177 21 300 207 12 73 chr13 24593093 24593175 -95151723 + MER5B DNA MER1_type 2 78 -100 440 199 53 53 chr13 24593206 24593297 -95151601 - MER5A DNA MER1_type -58 131 38 4269 119 39 2 chr13 24593297 24593909 -95150989 + MER41B LTR ERV1 1 635 0 440 199 53 53 chr13 24593909 24593948 -95150950 - MER5A DNA MER1_type -150 39 1 210 179 26 0 chr13 24594015 24594054 -95150844 + CT-rich Low_complexity Low_complexity 1 40 0 2263 97 3 0 chr13 24594379 24594669 -95150229 - AluSx SINE Alu -21 291 1 806 185 23 0 chr13 24594992 24595165 -95149733 + MER69 DNA AcHobo 2344 2520 -6 283 262 78 48 chr13 24596073 24596176 -95148722 - MIR SINE MIR -80 128 23 432 284 12 8 chr13 24596180 24596312 -95148586 + MIR SINE MIR 13 147 -62 4590 257 102 26 chr13 24596550 24598375 -95146523 - L2 LINE L2 -1 3312 1357 1447 176 68 3 chr13 24599222 24599529 -95145369 - L1MB3 LINE L1 0 6183 5857 2131 138 0 0 chr13 24599835 24600132 -95144766 + AluSx SINE Alu 1 297 -15 13984 132 23 121 chr13 24600142 24601034 -95143864 + L1P LINE L1 12 990 -5156 2463 28 42 0 chr13 24601034 24601323 -95143575 + AluY SINE Alu 2 302 -9 13984 132 23 121 chr13 24601323 24603568 -95141330 + L1P LINE L1 990 2842 -3304 812 87 0 0 chr13 24603568 24603671 -95141227 - AluSq/x SINE Alu -210 103 1 197 159 43 14 chr13 24603906 24603975 -95140923 + (TA)n Simple_repeat Simple_repeat 2 72 0 212 332 75 83 chr13 24604487 24604885 -95140013 + L2 LINE L2 2872 3266 -6 529 169 12 0 chr13 24605361 24605444 -95139454 + AluJ/FLAM SINE Alu 1 84 -228 794 249 98 87 chr13 24605449 24605899 -95138999 + L2 LINE L2 2691 3134 -179 207 0 0 0 chr13 24605899 24605922 -95138976 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2287 102 0 3 chr13 24605924 24606218 -95138680 - AluSq SINE Alu -20 293 1 794 249 98 87 chr13 24606218 24606359 -95138539 + L2 LINE L2 3134 3300 -13 280 293 9 66 chr13 24606437 24606543 -95138355 + MIR SINE MIR 8 107 -155 7853 41 2 2 chr13 24606742 24607708 -95137190 + L1PA5 LINE L1 5191 6153 -1 408 231 192 51 chr13 24607880 24607959 -95136939 - MIR SINE MIR -22 240 173 1857 143 32 0 chr13 24607959 24608239 -95136659 - AluJo SINE Alu -9 303 15 408 231 192 51 chr13 24608239 24608315 -95136583 - MIR SINE MIR -89 173 63 188 319 201 59 chr13 24609368 24609622 -95135276 - L2 LINE L2 0 3272 2983 1972 132 0 23 chr13 24609764 24610067 -95134831 + AluSx SINE Alu 1 296 -16 2109 110 48 0 chr13 24610959 24611250 -95133648 - AluSq SINE Alu -8 305 1 635 280 108 26 chr13 24611297 24611529 -95133369 - MIR SINE MIR -3 259 9 257 271 66 66 chr13 24612473 24612624 -95132274 - L2 LINE L2 -2 3311 3161 558 0 0 0 chr13 24612650 24612712 -95132186 + (TATTG)n Simple_repeat Simple_repeat 5 66 0 1974 154 3 0 chr13 24612712 24612997 -95131901 - AluSx SINE Alu -26 286 1 324 232 111 0 chr13 24613513 24613612 -95131286 - MIR3 SINE MIR -41 167 58 183 80 0 0 chr13 24614015 24614040 -95130858 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2346 81 0 3 chr13 24614263 24614559 -95130339 - AluY SINE Alu -16 295 1 1921 66 49 0 chr13 24615792 24616035 -95128863 + AluY SINE Alu 45 299 -12 513 315 81 20 chr13 24616192 24616565 -95128333 - L2 LINE L2 -184 3088 2680 2027 101 0 7 chr13 24617696 24617972 -95126926 + AluSc SINE Alu 1 274 -35 1329 158 0 0 chr13 24618214 24618417 -95126481 - AluSg/x SINE Alu -39 273 71 890 127 35 0 chr13 24618451 24618593 -95126305 - FRAM SINE Alu -4 172 26 1165 170 106 13 chr13 24618601 24618836 -95126062 + AluJo SINE Alu 46 302 -10 372 240 173 61 chr13 24619464 24619776 -95125122 + L1MEd LINE L1 598 944 -5175 1883 109 30 8 chr13 24619788 24620055 -95124843 + AluSx SINE Alu 2 274 -38 269 218 23 23 chr13 24620056 24620143 -95124755 + L1MC4 LINE L1 6616 6702 -1340 619 265 81 42 chr13 24620158 24620237 -95124661 + L1MEd LINE L1 928 1003 -5263 2298 115 0 6 chr13 24620237 24620550 -95124348 + AluSx SINE Alu 1 311 -1 619 265 81 42 chr13 24620550 24620872 -95124026 + L1MEd LINE L1 1003 1393 -4873 3287 179 31 5 chr13 24621307 24621920 -95122978 - L1MB4 LINE L1 -1 6179 5551 1049 172 45 32 chr13 24621922 24622143 -95122755 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 24622414 24622718 -95122180 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 24622912 24623172 -95121726 - MIR SINE MIR -1 261 1 475 257 29 15 chr13 24624327 24624463 -95120435 + MIR SINE MIR 32 169 -93 31 18 0 53 chr13 24624592 24624617 -95120281 + AT_rich Low_complexity Low_complexity 1 26 -28 1941 149 0 0 chr13 24624617 24624906 -95119992 - AluSx SINE Alu -23 289 1 31 18 0 53 chr13 24624906 24624937 -95119961 + AT_rich Low_complexity Low_complexity 26 54 0 2262 106 0 0 chr13 24625470 24625762 -95119136 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr13 24625935 24625964 -95118934 + AT_rich Low_complexity Low_complexity 1 29 0 2304 92 0 3 chr13 24626340 24626634 -95118264 - AluSx SINE Alu -19 293 1 288 320 86 68 chr13 24626786 24627183 -95117715 + L2 LINE L2 2829 3232 -40 219 109 22 22 chr13 24627339 24627385 -95117513 + A-rich Low_complexity Low_complexity 2 47 0 2359 45 3 58 chr13 24627459 24627772 -95117126 - AluY SINE Alu -15 296 1 198 0 0 0 chr13 24627805 24627827 -95117071 + (A)n Simple_repeat Simple_repeat 1 22 0 2269 100 0 7 chr13 24628827 24629136 -95115762 + AluSx SINE Alu 1 307 -5 908 211 11 16 chr13 24630004 24630194 -95114704 - MER5A DNA MER1_type 0 189 1 4888 230 66 17 chr13 24630368 24631953 -95112945 - L1MDa LINE L1 -4723 1817 17 24 0 0 0 chr13 24632068 24632092 -95112806 + AT_rich Low_complexity Low_complexity 1 24 0 2374 173 22 7 chr13 24632864 24633281 -95111617 + MSTB LTR MaLR 4 426 0 2022 255 35 31 chr13 24633972 24634493 -95110405 + L1M4 LINE L1 27 549 -5993 4066 234 97 31 chr13 24634522 24636003 -95108895 + L1M4 LINE L1 973 2550 -4096 304 346 19 25 chr13 24636003 24636165 -95108733 - L1M4 LINE L1 -1313 4833 4673 2097 223 71 30 chr13 24636165 24636726 -95108172 + MER74B LTR ERVL 29 612 -10 739 270 11 22 chr13 24636737 24637004 -95107894 - L1M4 LINE L1 -1498 4648 4385 627 228 90 0 chr13 24637016 24637161 -95107737 - FRAM SINE Alu -6 170 13 968 158 28 0 chr13 24637409 24637586 -95107312 - MER57B LTR ERV1 0 434 253 7021 162 20 8 chr13 24637586 24638378 -95106520 + L1PA16 LINE L1 3893 4674 -1492 1847 116 16 0 chr13 24638378 24638629 -95106269 + AluSg SINE Alu 44 298 -12 7021 162 20 8 chr13 24638629 24640071 -95104827 + L1PA16 LINE L1 4674 6157 -9 12160 151 19 16 chr13 24640075 24640129 -95104769 - ERVL-C2 LTR ERVL -255 5509 5457 189 74 0 0 chr13 24640129 24640156 -95104742 + (CA)n Simple_repeat Simple_repeat 2 28 0 12160 151 19 16 chr13 24640156 24642122 -95102776 - ERVL-C2 LTR ERVL -307 5457 3444 5486 159 48 12 chr13 24642110 24642536 -95102362 - ERVL-C2 LTR ERVL -2965 2799 2390 * 2185 151 110 15 chr13 24642536 24642926 -95101972 + MSTA LTR MaLR 1 427 -1 5486 159 48 12 chr13 24642926 24643428 -95101470 - ERVL-C2 LTR ERVL -3374 2390 1837 7516 212 28 35 chr13 24643458 24643967 -95100931 - ERVL-C2 LTR ERVL -4139 1625 1114 1126 171 411 10 chr13 24643967 24644271 -95100627 + MSTB LTR MaLR 1 426 0 7516 212 28 35 chr13 24644271 24645150 -95099748 - ERVL-C2 LTR ERVL -4650 1114 247 2211 129 46 35 chr13 24645150 24645521 -95099377 - THE1C LTR MaLR 0 375 1 7516 212 28 35 chr13 24645521 24645766 -95099132 - ERVL-C2 LTR ERVL -5517 247 2 277 110 0 141 chr13 24645767 24645863 -95099035 - MLT2C2 LTR ERVL 0 464 422 1411 219 99 56 chr13 24645882 24646347 -95098551 - MLT2B1 LTR ERVL -35 485 1 2491 85 0 0 chr13 24646491 24646798 -95098100 + AluY SINE Alu 1 307 -4 288 264 170 0 chr13 24646903 24647009 -95097889 + MIR SINE MIR 3 126 -136 226 102 0 61 chr13 24647038 24647087 -95097811 - LTR66 LTR ERVL -171 439 394 425 141 33 25 chr13 24647093 24647214 -95097684 + (TA)n Simple_repeat Simple_repeat 1 122 0 235 100 20 20 chr13 24647222 24647272 -95097626 - LTR66 LTR ERVL -171 439 390 2307 105 0 0 chr13 24648452 24648748 -95096150 - AluSx SINE Alu -16 296 1 228 135 0 0 chr13 24648783 24648820 -95096078 + (T)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr13 24649336 24649358 -95095540 + AT_rich Low_complexity Low_complexity 1 22 0 235 189 95 53 chr13 24649363 24649458 -95095440 - L1MC4a LINE L1 -1636 6172 6074 271 398 84 17 chr13 24649465 24649822 -95095076 + L2 LINE L2 2888 3268 -4 2232 116 0 0 chr13 24650058 24650361 -95094537 + AluSg SINE Alu 1 303 -7 252 0 0 0 chr13 24650377 24650405 -95094493 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2131 111 7 3 chr13 24650408 24650696 -95094202 - AluSg SINE Alu -21 289 1 21 57 0 0 chr13 24650915 24650950 -95093948 + AT_rich Low_complexity Low_complexity 1 35 0 356 234 123 58 chr13 24651709 24651880 -95093018 - L2 LINE L2 0 3313 3132 2165 136 0 0 chr13 24651933 24652241 -95092657 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr13 24652317 24652345 -95092553 + AT_rich Low_complexity Low_complexity 1 28 0 780 181 0 0 chr13 24652347 24652474 -95092424 + FRAM SINE Alu 40 166 -10 263 272 100 69 chr13 24653406 24653887 -95091011 + L1M4 LINE L1 2335 2830 -3316 231 295 50 22 chr13 24654073 24654212 -95090686 + L1P LINE L1 4884 5026 -1120 1089 116 9 116 chr13 24654216 24654441 -95090457 + L1MB8 LINE L1 5977 6177 -1 31 0 0 0 chr13 24654442 24654473 -95090425 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 24654705 24654729 -95090169 + AT_rich Low_complexity Low_complexity 1 24 0 317 327 153 14 chr13 24654801 24655024 -95089874 + L1ME4a LINE L1 5392 5645 -2163 702 179 11 11 chr13 24655067 24655246 -95089652 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 268 301 114 40 chr13 24655582 24655881 -95089017 + L1ME4a LINE L1 5624 5944 -177 203 147 0 0 chr13 24655892 24655926 -95088972 + (TG)n Simple_repeat Simple_repeat 2 35 0 2317 79 0 3 chr13 24656529 24656821 -95088077 + AluY SINE Alu 2 292 -19 869 178 0 0 chr13 24657579 24657708 -95087190 - FLAM_A SINE Alu -4 129 1 525 309 88 41 chr13 24657710 24657847 -95087051 - L1M4 LINE L1 -1085 5061 4932 2062 179 2 54 chr13 24657847 24658256 -95086642 - MLT1B LTR MaLR 0 390 3 525 309 88 41 chr13 24658256 24658892 -95086006 - L1M4 LINE L1 -1214 4932 4252 1637 256 65 20 chr13 24659191 24659680 -95085218 + MER74B LTR ERVL 56 566 -56 668 183 69 92 chr13 24660089 24660213 -95084685 - L1MC5 LINE L1 -11 7950 7825 2545 44 0 7 chr13 24660213 24660509 -95084389 + AluY SINE Alu 1 294 -17 668 183 69 92 chr13 24660509 24660646 -95084252 - L1MC5 LINE L1 -136 7825 7695 218 274 147 20 chr13 24660751 24660853 -95084045 + MIR SINE MIR 19 133 -75 338 353 16 8 chr13 24661002 24661124 -95083774 + MIR SINE MIR 22 144 -118 368 211 64 9 chr13 24661212 24661321 -95083577 + Charlie7 DNA MER1_type 65 179 -2433 453 284 34 92 chr13 24661338 24661880 -95083018 - L1MEd LINE L1 -4869 1250 762 9130 95 0 1 chr13 24661996 24663180 -95081718 + THE1B-int LTR MaLR 398 1580 0 2429 113 73 14 chr13 24663180 24663524 -95081374 + THE1B LTR MaLR 1 364 0 1852 181 0 0 chr13 24663524 24663856 -95081042 + L1PA13 LINE L1 4126 4457 -1689 1763 124 0 16 chr13 24663856 24664113 -95080785 + AluSx SINE Alu 35 287 -25 805 99 9 0 chr13 24664131 24664242 -95080656 + THE1B LTR MaLR 253 364 0 6384 114 9 3 chr13 24664242 24665404 -95079494 + L1PA13 LINE L1 4995 6163 0 1552 202 34 3 chr13 24665914 24666211 -95078687 + AluJo SINE Alu 1 306 -6 226 290 0 0 chr13 24666476 24666538 -95078360 + GA-rich Low_complexity Low_complexity 3 64 0 1669 184 52 66 chr13 24666608 24667153 -95077745 + MER67C LTR ERV1 1 504 -10 22 0 0 0 chr13 24667919 24667941 -95076957 + AT_rich Low_complexity Low_complexity 1 22 0 4781 165 37 26 chr13 24668016 24669277 -95075621 + L1MB4 LINE L1 4909 6178 -2 622 273 53 76 chr13 24669389 24669731 -95075167 + L1ME3A LINE L1 4869 5196 -950 2402 74 0 0 chr13 24669731 24670027 -95074871 - AluY SINE Alu -15 296 1 622 273 53 76 chr13 24670027 24670226 -95074672 + L1ME3A LINE L1 5196 5398 -748 381 334 99 21 chr13 24670246 24670690 -95074208 + L1ME3A LINE L1 5470 5938 -232 2044 106 4 0 chr13 24670888 24671162 -95073736 + AluSc SINE Alu 33 307 -2 1698 74 0 52 chr13 24671553 24671783 -95073115 + AluSq SINE Alu 1 218 -95 617 172 125 8 chr13 24672068 24672196 -95072702 - MLT1B LTR MaLR -234 156 14 2254 105 0 0 chr13 24672270 24672565 -95072333 - AluSx SINE Alu -17 295 1 884 168 6 48 chr13 24673472 24673639 -95071259 - FRAM SINE Alu -17 159 1 1213 200 69 87 chr13 24673668 24673835 -95071063 + MLT1C LTR MaLR 7 176 -291 2059 122 0 3 chr13 24673835 24674129 -95070769 + AluSx SINE Alu 1 293 -19 1213 200 69 87 chr13 24674129 24674396 -95070502 + MLT1C LTR MaLR 176 433 -34 359 286 81 11 chr13 24674421 24674606 -95070292 + L2 LINE L2 1771 1968 -1346 196 272 201 41 chr13 24674760 24675028 -95069870 + L2 LINE L2 2341 2651 -663 2217 105 0 16 chr13 24675090 24675394 -95069504 + AluSx SINE Alu 3 301 -11 1801 151 15 48 chr13 24675401 24675733 -95069165 - MLT1A1 LTR MaLR -40 325 5 459 0 0 0 chr13 24675776 24675827 -95069071 + (TG)n Simple_repeat Simple_repeat 1 51 0 2324 132 14 3 chr13 24675827 24676190 -95068708 - L1MA9 LINE L1 -161 6151 5785 1725 265 32 2 chr13 24676436 24676847 -95068051 - MER70B LTR ERVL -152 426 4 2172 234 14 24 chr13 24676860 24677440 -95067458 - MER70B-int LTR ERVL 0 5023 4450 1192 204 32 22 chr13 24678123 24678559 -95066339 - MER70B-int LTR ERVL -1443 3580 3084 * 1494 163 112 14 chr13 24678556 24678851 -95066047 - MER70B-int LTR ERVL -2375 2648 2325 335 379 128 0 chr13 24678861 24679088 -95065810 - L1M3c LINE L1 -5884 257 2 270 165 273 66 chr13 24679132 24679253 -95065645 - L1MC4 LINE L1 -366 7676 7531 724 283 94 7 chr13 24679429 24679715 -95065183 - L1MC4 LINE L1 -443 7599 7289 1741 179 28 0 chr13 24679715 24680005 -95064893 + AluJb SINE Alu 1 298 -14 319 219 29 0 chr13 24681036 24681141 -95063757 + (TA)n Simple_repeat Simple_repeat 1 108 0 252 0 0 0 chr13 24681176 24681204 -95063694 + (TA)n Simple_repeat Simple_repeat 2 29 0 2485 58 0 16 chr13 24681204 24681515 -95063383 - AluY SINE Alu -5 306 1 189 0 0 0 chr13 24682172 24682193 -95062705 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1578 183 0 21 chr13 24682196 24682486 -95062412 - AluJb SINE Alu -28 284 1 327 207 17 52 chr13 24682492 24682608 -95062290 + Charlie7 DNA MER1_type 2435 2546 -66 2336 62 7 3 chr13 24682649 24682939 -95061959 + AluSq SINE Alu 1 291 -22 327 276 26 79 chr13 24683077 24683229 -95061669 - L2 LINE L2 -7 3306 3163 216 293 17 0 chr13 24683706 24683764 -95061134 + (CG)n Simple_repeat Simple_repeat 2 60 0 2673 48 0 0 chr13 24683950 24684260 -95060638 - AluY SINE Alu 0 311 2 365 274 0 12 chr13 24684794 24684878 -95060020 - MIR SINE MIR -153 109 27 1020 139 13 0 chr13 24684922 24685073 -95059825 - FRAM SINE Alu -24 152 1 358 259 35 26 chr13 24685158 24685274 -95059624 + MIR3 SINE MIR 86 202 -6 2329 102 16 0 chr13 24685808 24686112 -95058786 - AluSc SINE Alu 0 309 1 2231 90 3 0 chr13 24686231 24686520 -95058378 + AluSx SINE Alu 1 290 -22 208 279 47 58 chr13 24686869 24686955 -95057943 - L3b LINE CR1 -98 1485 1401 1841 224 56 18 chr13 24687120 24687567 -95057331 - MLT1D LTR MaLR -21 484 21 323 344 51 6 chr13 24687600 24687757 -95057141 - L3 LINE CR1 -41 1536 1373 215 349 48 0 chr13 24687880 24687963 -95056935 - L2 LINE L2 -4 3268 3182 5286 266 104 20 chr13 24688469 24688619 -95056279 - L2 LINE L2 0 3313 3177 1893 140 90 39 chr13 24688619 24688976 -95055922 + THE1C LTR MaLR 1 375 0 5286 266 104 20 chr13 24688976 24689595 -95055303 - L2 LINE L2 -136 3177 2611 2708 196 70 33 chr13 24689595 24690165 -95054733 + MLT1E LTR MaLR 1 591 -2 5286 266 104 20 chr13 24690165 24691499 -95053399 - L2 LINE L2 -702 2611 1032 4520 141 63 41 chr13 24691505 24691786 -95053112 + L1MCa LINE L1 579 852 -5574 3440 77 18 14 chr13 24691786 24692228 -95052670 - MLT2A1 LTR ERVL 0 444 1 4520 141 63 41 chr13 24692228 24692857 -95052041 + L1MCa LINE L1 852 1509 -4917 274 298 36 12 chr13 24692857 24692941 -95051957 - MIR SINE MIR -171 91 6 201 129 0 0 chr13 24692974 24693005 -95051893 + (CA)n Simple_repeat Simple_repeat 2 32 0 1318 283 97 36 chr13 24693137 24693553 -95051345 + L1MEc LINE L1 1213 1602 -4794 1854 112 71 4 chr13 24693553 24693848 -95051050 + AluSx SINE Alu 1 313 0 1318 283 97 36 chr13 24693848 24694176 -95050722 + L1MEc LINE L1 1602 2003 -4393 3551 166 22 37 chr13 24694249 24694918 -95049980 + MER67B LTR ERV1 1 659 -2 911 97 0 0 chr13 24694928 24695041 -95049857 + AluY SINE Alu 1 113 -198 657 234 27 11 chr13 24695041 24695225 -95049673 + L1MEc LINE L1 2856 3042 -3173 195 184 0 0 chr13 24695225 24695263 -95049635 + (TA)n Simple_repeat Simple_repeat 2 39 0 237 174 0 0 chr13 24695300 24695346 -95049552 + LTR66 LTR ERVL 394 439 -171 * 1899 201 37 5 chr13 24695332 24695703 -95049195 - MLT2D LTR ERVL -40 480 1 3630 212 117 41 chr13 24695703 24696991 -95047907 + L1M3 LINE L1 4004 5406 -760 2210 137 5 67 chr13 24696991 24697377 -95047521 + MLT1A1 LTR MaLR 4 365 0 3630 212 117 41 chr13 24697377 24697510 -95047388 + L1M3 LINE L1 5406 5528 -638 1565 189 31 18 chr13 24697524 24697587 -95047311 + MER45B DNA AcHobo 38 99 -941 2246 99 20 3 chr13 24697587 24697889 -95047009 - AluSq SINE Alu -6 307 1 1565 189 31 18 chr13 24697889 24698111 -95046787 + MER45B DNA AcHobo 99 327 -713 573 128 12 0 chr13 24698111 24698197 -95046701 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 24698197 24698385 -95046513 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 24698387 24698487 -95046411 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 24699801 24699845 -95045053 + A-rich Low_complexity Low_complexity 1 47 0 474 336 94 0 chr13 24700109 24700332 -95044566 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 24700445 24700483 -95044415 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 24700630 24700864 -95044034 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 24700864 24701160 -95043738 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 24701160 24701368 -95043530 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 24701398 24701711 -95043187 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 24702484 24702534 -95042364 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 24702916 24703212 -95041686 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 24703917 24704037 -95040861 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 24704037 24704289 -95040609 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 24704289 24704436 -95040462 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 24705102 24705281 -95039617 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 24705283 24705827 -95039071 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 24707851 24707930 -95036968 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 24708661 24708968 -95035930 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 24709267 24709439 -95035459 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 24709821 24709919 -95034979 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 24710814 24710860 -95034038 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 24713350 24713529 -95031369 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 24713543 24713663 -95031235 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 24713665 24713735 -95031163 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 24713857 24714165 -95030733 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 24714631 24714710 -95030188 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 24714791 24714996 -95029902 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 24715046 24715133 -95029765 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 24715977 24716022 -95028876 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 24717752 24717840 -95027058 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 24719855 24720093 -95024805 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 24720823 24720910 -95023988 - L2 LINE L2 0 3313 3204 25 51 0 0 chr13 24721881 24721920 -95022978 + AT_rich Low_complexity Low_complexity 1 39 0 2383 97 0 0 chr13 24722084 24722383 -95022515 + AluSc SINE Alu 1 299 -10 2137 148 17 14 chr13 24722543 24722900 -95021998 - L1MB7 LINE L1 -9 6175 5818 800 275 174 28 chr13 24722991 24723387 -95021511 - LTR16A1 LTR ERVL -1 456 3 1989 319 59 18 chr13 24723471 24724794 -95020104 - HERV16 LTR ERVL -90 5344 3938 2591 317 37 9 chr13 24724859 24725843 -95019055 - HERV16 LTR ERVL -1926 3838 2828 371 236 47 8 chr13 24725849 24725976 -95018922 - Charlie5 DNA MER1_type -85 2527 2396 1698 309 61 19 chr13 24726809 24727081 -95017817 - HERV16 LTR ERVL -2923 2841 2582 420 139 0 70 chr13 24727081 24727167 -95017731 - MADE1 DNA Mariner 0 80 1 1698 309 61 19 chr13 24727167 24727651 -95017247 - HERV16 LTR ERVL -3182 2582 2053 * 2398 298 115 55 chr13 24727641 24728379 -95016519 - HERV16 LTR ERVL -3184 1812 1119 222 37 0 0 chr13 24728379 24728406 -95016492 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2398 298 115 55 chr13 24728406 24729377 -95015521 - HERV16 LTR ERVL -3877 1119 1 388 243 162 7 chr13 24729377 24729525 -95015373 - LTR16A1 LTR ERVL 0 457 287 769 188 5 124 chr13 24729931 24730065 -95014833 - MER5B DNA MER1_type 0 178 74 2300 107 3 0 chr13 24730065 24730363 -95014535 - AluSq SINE Alu -14 299 1 769 188 5 124 chr13 24730363 24730430 -95014468 - MER5B DNA MER1_type -104 74 1 216 270 135 18 chr13 24730431 24730542 -95014356 + L2 LINE L2 3190 3313 0 2299 94 0 23 chr13 24730828 24731136 -95013762 + AluSq SINE Alu 1 301 -12 816 123 0 72 chr13 24731149 24731287 -95013611 + FLAM_C SINE Alu 1 128 -15 2020 109 51 0 chr13 24731634 24731908 -95012990 - AluSg SINE Alu -22 288 1 2431 62 0 13 chr13 24732304 24732609 -95012289 - AluY SINE Alu -10 301 1 1749 196 0 7 chr13 24735074 24735380 -95009518 - AluJo SINE Alu -8 304 1 2291 119 0 0 chr13 24735903 24736214 -95008684 + AluSx SINE Alu 1 311 -1 2110 135 0 0 chr13 24736219 24736508 -95008390 + AluSx SINE Alu 3 291 -21 516 318 50 0 chr13 24736812 24736991 -95007907 - MIR SINE MIR -13 249 62 2343 95 0 0 chr13 24737323 24737619 -95007279 - AluSx SINE Alu -16 296 1 578 227 198 12 chr13 24737968 24738140 -95006758 + MIR SINE MIR 59 262 0 366 250 159 9 chr13 24738198 24738418 -95006480 - LTR16C LTR ERVL -16 475 223 2133 127 0 0 chr13 24738488 24738779 -95006119 + AluSx SINE Alu 1 291 -21 2035 136 27 0 chr13 24738833 24739134 -95005764 + AluSc SINE Alu 1 309 0 228 135 0 0 chr13 24739184 24739221 -95005677 + (CAT)n Simple_repeat Simple_repeat 2 38 0 319 292 42 0 chr13 24739647 24739743 -95005155 + MER5B DNA MER1_type 2 101 -77 3362 190 20 8 chr13 24739744 24740454 -95004444 - L1 LINE L1 -1120 5026 4309 273 160 0 0 chr13 24740454 24740504 -95004394 + Alu SINE Alu 259 308 0 430 240 33 8 chr13 24740535 24740656 -95004242 + L1MA9 LINE L1 6167 6290 -22 263 163 0 0 chr13 24740704 24740747 -95004151 + MER5B DNA MER1_type 136 178 0 4353 141 15 51 chr13 24740869 24741695 -95003203 + L1MA9 LINE L1 5021 5875 -437 2473 99 0 0 chr13 24741695 24742007 -95002891 + AluSq SINE Alu 1 312 -1 4353 141 15 51 chr13 24742007 24742254 -95002644 + L1MA9 LINE L1 5875 6141 -171 2327 92 0 3 chr13 24742254 24742557 -95002341 + AluSx SINE Alu 1 302 -10 4353 141 15 51 chr13 24742557 24742702 -95002196 + L1MA9 LINE L1 6141 6290 -22 2398 43 0 4 chr13 24742718 24743028 -95001870 + AluY SINE Alu 2 310 0 967 331 30 48 chr13 24744248 24744743 -95000155 + L2 LINE L2 994 1479 -1835 1121 256 59 22 chr13 24744757 24745235 -94999663 + MLT1H LTR MaLR 14 547 -2 222 333 21 10 chr13 24745255 24745351 -94999547 + L2 LINE L2 1493 1589 -1725 662 219 121 47 chr13 24745581 24745796 -94999102 - MIR SINE MIR -27 235 5 1185 284 94 95 chr13 24745810 24745929 -94998969 + L2 LINE L2 1802 1920 -1393 708 217 66 40 chr13 24745929 24746155 -94998743 + MER106A DNA MER1_type 1 232 -4 1185 284 94 95 chr13 24746155 24746919 -94997979 + L2 LINE L2 1920 2683 -630 1024 128 6 6 chr13 24746919 24747099 -94997799 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 189 0 0 0 chr13 24747108 24747129 -94997769 + (TCCA)n Simple_repeat Simple_repeat 3 23 0 1185 284 94 95 chr13 24747129 24747577 -94997321 + L2 LINE L2 2691 3135 -178 1991 139 9 22 chr13 24749176 24749492 -94995406 + AluJo SINE Alu 1 312 0 185 291 73 0 chr13 24750108 24750163 -94994735 - L2 LINE L2 0 3272 3214 198 118 0 0 chr13 24751333 24751367 -94993531 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 318 26 0 0 chr13 24755051 24755090 -94989808 + (TG)n Simple_repeat Simple_repeat 1 39 0 804 260 35 31 chr13 24755170 24755424 -94989474 - MIR SINE MIR 0 262 8 198 0 0 0 chr13 24755658 24755680 -94989218 + (TG)n Simple_repeat Simple_repeat 2 23 0 317 349 128 13 chr13 24755722 24755871 -94989027 + MIR3 SINE MIR 16 181 -27 1842 160 29 29 chr13 24756394 24756738 -94988160 - MER2 DNA MER2_type 0 344 1 423 320 79 57 chr13 24756944 24757172 -94987726 - L2 LINE L2 0 3272 3040 2863 142 43 13 chr13 24758468 24759002 -94985896 - L1MB7 LINE L1 -19 6165 5616 2502 55 3 0 chr13 24760291 24760598 -94984300 - AluY SINE Alu -3 308 1 2064 107 10 0 chr13 24760614 24760903 -94983995 - AluSq SINE Alu -21 292 1 2385 61 0 3 chr13 24760914 24761211 -94983687 - AluY SINE Alu -15 296 1 24 0 0 0 chr13 24761371 24761395 -94983503 + AT_rich Low_complexity Low_complexity 1 24 0 848 173 31 19 chr13 24761427 24761443 -94983455 - FRAM SINE Alu -137 165 151 180 0 0 0 chr13 24761443 24761463 -94983435 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 848 173 31 19 chr13 24761463 24761608 -94983290 - FRAM SINE Alu -151 151 2 363 216 11 0 chr13 24761690 24761778 -94983120 - L1MA4A LINE L1 -26 6277 6189 2960 160 14 10 chr13 24761784 24762366 -94982532 - L1MA4A LINE L1 -183 6120 5537 238 356 113 52 chr13 24762366 24762596 -94982302 - L2 LINE L2 -38 3234 2991 976 294 172 19 chr13 24762825 24763522 -94981376 - L2 LINE L2 -362 2952 2149 412 253 207 5 chr13 24764749 24764947 -94979951 - L1MC4a LINE L1 -1903 5905 5668 513 0 0 0 chr13 24765421 24765478 -94979420 + (CA)n Simple_repeat Simple_repeat 2 58 0 1726 181 0 0 chr13 24765493 24765764 -94979134 - AluJo SINE Alu -21 291 21 200 35 35 0 chr13 24767023 24767052 -94977846 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3486 169 100 43 chr13 24767206 24767276 -94977622 - L1MB8 LINE L1 0 6178 6113 2340 108 3 0 chr13 24767276 24767573 -94977325 + AluSq SINE Alu 1 298 -15 3486 169 100 43 chr13 24767573 24768406 -94976492 - L1MB8 LINE L1 -65 6113 5225 3728 109 51 149 chr13 24768406 24768692 -94976206 - Tigger3(Golem) DNA MER2_type 0 3029 2717 1425 194 14 25 chr13 24768692 24768976 -94975922 + AluJo SINE Alu 1 281 -31 3728 109 51 149 chr13 24768976 24769381 -94975517 - Tigger3(Golem) DNA MER2_type -312 2717 2274 505 149 11 11 chr13 24769381 24769468 -94975430 + AluJ/FLAM SINE Alu 1 87 -225 3728 109 51 149 chr13 24769468 24770082 -94974816 - Tigger3(Golem) DNA MER2_type -755 2274 1 1205 196 237 7 chr13 24770086 24770524 -94974374 - L1MB8 LINE L1 -937 5209 4671 21 0 0 0 chr13 24770706 24770727 -94974171 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 24770827 24770850 -94974048 + AT_rich Low_complexity Low_complexity 1 23 0 402 291 102 20 chr13 24771256 24771510 -94973388 - L1MC4a LINE L1 -439 5682 5408 2398 92 0 0 chr13 24771595 24771901 -94972997 - AluY SINE Alu -5 306 1 461 322 115 29 chr13 24772072 24772550 -94972348 - L1MC4a LINE L1 -1087 5059 4541 422 189 75 0 chr13 24772682 24772788 -94972110 - MER53 DNA DNA -75 114 1 2259 79 7 0 chr13 24773044 24773322 -94971576 - AluSc SINE Alu -20 289 10 214 278 12 33 chr13 24773539 24773634 -94971264 + MIR SINE MIR 49 144 -64 23 0 0 0 chr13 24773724 24773747 -94971151 + AT_rich Low_complexity Low_complexity 1 23 0 552 316 130 3 chr13 24775076 24775361 -94969537 + L3 LINE CR1 1251 1571 -6 256 297 0 62 chr13 24775626 24775754 -94969144 - L2 LINE L2 -829 2485 2366 239 308 15 0 chr13 24775856 24775921 -94968977 + L1MC4 LINE L1 6934 6999 -1043 1574 187 59 9 chr13 24775932 24776253 -94968645 - MER2 DNA MER2_type 0 345 9 1250 293 74 31 chr13 24776330 24777071 -94967827 + L1MC4 LINE L1 7109 7881 -161 258 32 0 0 chr13 24777139 24777170 -94967728 + (TG)n Simple_repeat Simple_repeat 2 32 0 526 224 28 47 chr13 24777646 24777871 -94967027 - L1M4 LINE L1 -681 5497 5275 1039 168 5 10 chr13 24777969 24778172 -94966726 + L1PB1 LINE L1 3 204 -6659 * 12425 184 40 31 chr13 24778163 24780498 -94964400 + L1PB1 LINE L1 1113 3426 -3441 2181 104 0 3 chr13 24780498 24780785 -94964113 + AluSc SINE Alu 1 286 -23 2257 99 7 3 chr13 24780788 24781092 -94963806 + AluSg SINE Alu 1 305 -5 12425 184 40 31 chr13 24781092 24782130 -94962768 + L1PB1 LINE L1 3427 4454 -2413 2088 112 25 0 chr13 24782130 24782436 -94962462 + AluSq SINE Alu 3 315 0 12425 184 40 31 chr13 24782436 24783066 -94961832 + L1PB1 LINE L1 4454 5077 -1790 243 88 0 0 chr13 24783066 24783100 -94961798 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 12425 184 40 31 chr13 24783100 24784458 -94960440 + L1PB1 LINE L1 5077 6505 -362 459 18 0 0 chr13 24784470 24784525 -94960373 - AluSg/x SINE Alu -43 266 212 2511 104 6 6 chr13 24784532 24784897 -94960001 + L1PB1 LINE L1 6501 6865 -2 401 251 134 40 chr13 24785032 24785135 -94959763 - L1M4 LINE L1 -901 5245 5153 2206 104 0 3 chr13 24785135 24785432 -94959466 - AluSg SINE Alu -14 296 1 401 251 134 40 chr13 24785432 24785603 -94959295 - L1M4 LINE L1 -993 5153 4945 780 197 45 155 chr13 24785609 24785945 -94958953 - L1M4 LINE L1 -1379 4767 4396 1630 145 80 0 chr13 24785945 24786207 -94958691 - AluSx SINE Alu -27 285 3 780 197 45 155 chr13 24786207 24786222 -94958676 - L1M4 LINE L1 -1750 4396 4381 2361 90 7 0 chr13 24786222 24786522 -94958376 - AluSc SINE Alu -7 302 1 780 197 45 155 chr13 24786522 24786723 -94958175 - L1M4 LINE L1 -1765 4381 4275 2299 81 0 0 chr13 24786724 24787019 -94957879 - AluY SINE Alu -16 295 1 210 37 0 0 chr13 24787972 24787999 -94956899 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2123 112 7 14 chr13 24788004 24788299 -94956599 + AluSg SINE Alu 1 293 -17 1473 138 53 0 chr13 24788305 24788530 -94956368 + Tigger3(Golem) DNA MER2_type 2791 3027 -2 279 272 103 70 chr13 24788655 24788956 -94955942 - HAL1 LINE L1 -4 2503 2193 797 256 30 0 chr13 24788964 24789163 -94955735 - HAL1 LINE L1 -677 1830 1626 477 176 33 0 chr13 24789443 24789534 -94955364 + MER5A DNA MER1_type 9 102 -87 612 308 26 51 chr13 24789604 24789877 -94955021 - MLT1J LTR MaLR -235 276 11 696 223 30 72 chr13 24789877 24790182 -94954716 - HAL1 LINE L1 -899 1608 1317 312 93 0 0 chr13 24790186 24790229 -94954669 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 299 241 90 24 chr13 24790277 24790443 -94954455 - HAL1 LINE L1 -1341 1166 990 279 27 41 178 chr13 24790454 24790485 -94954413 - L1MA8 LINE L1 -6 6285 6268 2025 117 13 10 chr13 24790485 24790785 -94954113 + AluSx SINE Alu 1 301 -11 279 27 41 178 chr13 24790785 24790826 -94954072 - L1MA8 LINE L1 -23 6268 6223 4048 154 70 14 chr13 24790850 24791293 -94953605 - L1MA8 LINE L1 -6 6294 5877 915 193 6 0 chr13 24791293 24791454 -94953444 - AluJo SINE Alu -4 298 137 4048 154 70 14 chr13 24791454 24791897 -94953001 - L1MA8 LINE L1 -423 5877 5322 2150 112 10 0 chr13 24791902 24792205 -94952693 - AluSc SINE Alu -3 306 1 353 296 112 34 chr13 24792258 24792464 -94952434 - HAL1 LINE L1 -1608 899 678 686 254 107 43 chr13 24792488 24792928 -94951970 - MER110A LTR ERV1 0 468 1 6620 257 102 69 chr13 24793070 24794934 -94949964 - MER110A-int LTR ERV1 -74 4573 2580 1239 171 42 114 chr13 24794934 24795337 -94949561 - MLT1A2 LTR MaLR 0 374 1 6620 257 102 69 chr13 24795337 24796312 -94948586 - MER110A-int LTR ERV1 -2067 2580 1639 1151 170 22 31 chr13 24796441 24796670 -94948228 - Tigger3(Golem) DNA MER2_type 0 3029 2803 280 277 15 0 chr13 24796645 24796710 -94948188 - Tigger3(Golem) DNA MER2_type -2963 66 1 * 255 272 0 87 chr13 24796711 24796814 -94948084 - MER110A-int LTR ERV1 -3170 1477 1384 307 301 43 21 chr13 24796873 24796966 -94947932 - MER110A-int LTR ERV1 -3295 1352 1258 768 217 133 6 chr13 24796994 24797160 -94947738 - MER58C DNA MER1_type 0 215 29 358 191 0 29 chr13 24797341 24797409 -94947489 - Tigger7 DNA MER2_type 0 2491 2426 1458 167 15 15 chr13 24797439 24797703 -94947195 - Tigger7 DNA MER2_type -2223 264 1 305 296 111 0 chr13 24797714 24797849 -94947049 - MER110A-int LTR ERV1 -3969 678 529 * 381 286 8 25 chr13 24797829 24797948 -94946950 - MER89-int LTR ERV1 -4124 2677 2561 261 333 35 0 chr13 24798169 24798256 -94946642 - MER89-int LTR ERV1 -4432 215 126 189 0 0 0 chr13 24798376 24798397 -94946501 + (T)n Simple_repeat Simple_repeat 1 21 0 392 339 32 32 chr13 24798497 24798866 -94946032 - MER89-int LTR ERV1 -4441 2360 1992 254 327 71 0 chr13 24799764 24799877 -94945021 - L2 LINE L2 -604 2710 2590 542 153 119 42 chr13 24800034 24800152 -94944746 - AluJo SINE Alu -172 130 4 575 230 52 110 chr13 24800328 24800468 -94944430 - L1MEc LINE L1 -3143 3072 2926 1635 116 8 27 chr13 24800468 24800726 -94944172 - AluSx SINE Alu -16 296 44 575 230 52 110 chr13 24800726 24800967 -94943931 - L1MEc LINE L1 -3289 2926 2713 295 236 9 27 chr13 24801012 24801122 -94943776 - L1MEc LINE L1 -3767 2448 2341 2176 112 0 7 chr13 24801145 24801450 -94943448 + AluSg1 SINE Alu 1 303 -6 324 222 204 57 chr13 24801542 24801718 -94943180 - L1MEc LINE L1 -4164 2232 2031 1483 167 3 97 chr13 24801800 24802130 -94942768 - AluJo SINE Alu -3 299 1 806 286 80 36 chr13 24802228 24802952 -94941946 - L1MEc LINE L1 -4616 1780 1025 2345 102 3 0 chr13 24803785 24804090 -94940808 - AluSx SINE Alu -6 306 1 1593 200 58 90 chr13 24804322 24804822 -94940076 + MLT1D LTR MaLR 22 505 0 806 227 62 0 chr13 24805282 24805476 -94939422 - MER3 DNA MER1_type -1 208 3 458 279 192 0 chr13 24805566 24805738 -94939160 + MIR SINE MIR 51 255 -7 414 329 37 0 chr13 24805845 24806009 -94938889 + L2 LINE L2 1728 1897 -1417 677 273 129 5 chr13 24806035 24806244 -94938654 + MIR SINE MIR 1 235 -27 2474 71 0 0 chr13 24806304 24806600 -94938298 - AluY SINE Alu -15 296 1 540 362 21 11 chr13 24806625 24806907 -94937991 + L2 LINE L2 1994 2278 -1036 1147 192 19 41 chr13 24806907 24806936 -94937962 - L1MB3 LINE L1 -24 6159 6131 1788 100 117 18 chr13 24806936 24807217 -94937681 - AluSg SINE Alu -1 309 1 1147 192 19 41 chr13 24807217 24807453 -94937445 - L1MB3 LINE L1 -52 6131 5900 2220 124 20 13 chr13 24807489 24807939 -94936959 - MER1A DNA MER1_type -2 527 1 225 274 16 0 chr13 24808447 24808509 -94936389 + CT-rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr13 24808509 24808533 -94936365 + AT_rich Low_complexity Low_complexity 1 24 0 501 300 125 82 chr13 24808542 24809125 -94935773 - MLT1L LTR MaLR -2 613 6 5298 72 0 27 chr13 24809171 24809878 -94935020 + LTR12 LTR ERV1 1 688 0 196 297 50 40 chr13 24810286 24810387 -94934511 + L2 LINE L2 3175 3276 -37 235 270 165 9 chr13 24810741 24810856 -94934042 - MIR SINE MIR -30 232 100 185 65 32 0 chr13 24812575 24812606 -94932292 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 226 158 8 chr13 24812781 24812914 -94931984 + MIR SINE MIR 2 154 -108 4318 156 228 42 chr13 24812964 24813227 -94931671 + L1MB3 LINE L1 21 234 -6150 1853 161 0 3 chr13 24813227 24813512 -94931386 + AluJb SINE Alu 1 284 -28 4318 156 228 42 chr13 24813512 24814373 -94930525 + L1MB3 LINE L1 234 1355 -5029 * 9340 213 55 34 chr13 24814365 24816336 -94928562 + L1MB3 LINE L1 2615 4543 -1876 2277 108 3 3 chr13 24816336 24816641 -94928257 + AluSq SINE Alu 1 305 -8 9340 213 55 34 chr13 24816641 24817268 -94927630 + L1MB3 LINE L1 4543 5155 -1264 1739 164 0 46 chr13 24817268 24817591 -94927307 + AluJo SINE Alu 1 308 -4 9340 213 55 34 chr13 24817591 24818716 -94926182 + L1MB3 LINE L1 5155 6418 -1 208 254 8 8 chr13 24818898 24819028 -94925870 + (TA)n Simple_repeat Simple_repeat 1 130 0 1169 140 68 162 chr13 24820280 24820693 -94924205 - MLT1A2 LTR MaLR 0 374 1 278 317 26 37 chr13 24821003 24821186 -94923712 - L1ME LINE L1 -482 5682 5499 224 240 20 0 chr13 24822256 24822306 -94922592 + L2 LINE L2 3225 3275 -38 430 324 77 12 chr13 24822594 24822841 -94922057 - MER90 LTR ERV1 -18 557 295 1090 284 66 58 chr13 24823352 24823925 -94920973 - MER110-int LTR ERV1 -1337 3310 2733 28 61 0 0 chr13 24824375 24824424 -94920474 + AT_rich Low_complexity Low_complexity 1 49 0 2170 125 0 0 chr13 24824686 24824990 -94919908 + AluSx SINE Alu 3 306 -6 27 62 0 0 chr13 24825018 24825066 -94919832 + AT_rich Low_complexity Low_complexity 1 48 0 609 259 52 42 chr13 24825702 24825988 -94918910 - HAL1 LINE L1 -974 1533 1245 598 310 51 16 chr13 24826107 24826362 -94918536 - HAL1 LINE L1 -2240 267 4 24 0 0 0 chr13 24826500 24826524 -94918374 + AT_rich Low_complexity Low_complexity 1 24 0 2284 102 0 3 chr13 24826630 24826944 -94917954 - AluSq SINE Alu 0 313 1 242 346 0 12 chr13 24827037 24827118 -94917780 + L2 LINE L2 2888 2967 -305 5779 168 90 33 chr13 24827180 24827350 -94917548 - L1MA3 LINE L1 -7 6298 6139 1964 136 17 0 chr13 24827350 24827645 -94917253 - AluSx SINE Alu -12 300 1 5779 168 90 33 chr13 24827645 24829381 -94915517 - L1MA3 LINE L1 -166 6139 4228 1888 107 0 0 chr13 24829381 24829623 -94915275 + AluSx SINE Alu 38 279 -33 5779 168 90 33 chr13 24829623 24829923 -94914975 - L1MA3 LINE L1 -2077 4228 3947 1005 154 35 0 chr13 24830042 24830211 -94914687 + Tigger4(Zombi) DNA MER2_type 5 179 -2552 * 2769 109 32 32 chr13 24830209 24830283 -94914615 + Tigger4(Zombi) DNA MER2_type 2265 2338 -393 2062 141 0 0 chr13 24830283 24830581 -94914317 - AluSq SINE Alu -15 298 1 2769 109 32 32 chr13 24830581 24830973 -94913925 + Tigger4(Zombi) DNA MER2_type 2337 2731 0 27 73 0 0 chr13 24831837 24831892 -94913006 + AT_rich Low_complexity Low_complexity 1 55 0 419 359 138 26 chr13 24831930 24832540 -94912358 + L2 LINE L2 1341 2018 -1296 360 310 139 66 chr13 24832542 24833045 -94911853 + L2 LINE L2 2171 2710 -604 306 0 0 0 chr13 24833062 24833096 -94911802 + (CAA)n Simple_repeat Simple_repeat 2 35 0 363 78 0 0 chr13 24833254 24833305 -94911593 + (CA)n Simple_repeat Simple_repeat 2 52 0 824 229 19 33 chr13 24833314 24833528 -94911370 + Charlie1 DNA MER1_type 10 220 -2541 553 189 53 8 chr13 24833524 24833656 -94911242 + Charlie1 DNA MER1_type 2622 2759 -2 * 2627 36 0 3 chr13 24833692 24833995 -94910903 - AluY SINE Alu -9 302 1 365 255 229 38 chr13 24834065 24834222 -94910676 + L2 LINE L2 3124 3310 -3 514 339 38 6 chr13 24834412 24834595 -94910303 + MIR3 SINE MIR 15 203 -5 28 86 0 0 chr13 24834624 24834694 -94910204 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr13 24835094 24835118 -94909780 + AT_rich Low_complexity Low_complexity 1 24 0 564 217 159 16 chr13 24835921 24836110 -94908788 + L1ME3A LINE L1 5945 6160 -10 1247 248 149 26 chr13 24836215 24836837 -94908061 - L1M4 LINE L1 -945 5201 4503 341 57 0 19 chr13 24836837 24836890 -94908008 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr13 24836890 24836915 -94907983 + AT_rich Low_complexity Low_complexity 1 25 0 1127 256 83 2 chr13 24836923 24837334 -94907564 - L1M4 LINE L1 -1843 4303 3860 532 196 26 26 chr13 24837327 24837480 -94907418 - L1M4 LINE L1 -3206 2940 2788 * 507 237 7 40 chr13 24837478 24837630 -94907268 + L1MC5 LINE L1 7696 7842 -119 * 2270 105 0 0 chr13 24838272 24838566 -94906332 - AluSg SINE Alu -16 294 1 24 0 0 0 chr13 24838845 24838869 -94906029 + AT_rich Low_complexity Low_complexity 1 24 0 2205 81 21 0 chr13 24839070 24839354 -94905544 - AluSc SINE Alu -19 290 1 521 233 25 17 chr13 24839553 24839701 -94905197 + MIR SINE MIR 38 254 -8 1679 175 0 36 chr13 24839933 24840264 -94904634 - MLT1B LTR MaLR -2 388 70 * 4026 108 107 153 chr13 24840258 24841033 -94903865 - Tigger3b DNA MER2_type -1797 1232 423 2896 131 31 6 chr13 24841033 24841514 -94903384 - L1PA16 LINE L1 0 6166 5674 4026 108 107 153 chr13 24841514 24841619 -94903279 - Tigger3b DNA MER2_type -2606 423 315 1652 138 71 25 chr13 24841619 24841902 -94902996 + AluSx SINE Alu 1 296 -16 4026 108 107 153 chr13 24841902 24842324 -94902574 - Tigger3b DNA MER2_type -2714 315 1 497 132 13 0 chr13 24842324 24842400 -94902498 - MLT1B LTR MaLR -313 77 1 2104 113 3 7 chr13 24842523 24842824 -94902074 - AluSx SINE Alu -12 300 1 287 328 17 17 chr13 24842977 24843093 -94901805 - L2 LINE L2 0 3272 3157 662 303 29 29 chr13 24843202 24843446 -94901452 + MIR SINE MIR 10 253 -9 21 0 0 0 chr13 24844312 24844333 -94900565 + AT_rich Low_complexity Low_complexity 1 21 0 4050 174 38 38 chr13 24844633 24845441 -94899457 + L1MB4 LINE L1 5200 6012 -168 1683 120 59 115 chr13 24845441 24845798 -94899100 + MER1B DNA MER1_type 1 337 0 4050 174 38 38 chr13 24845798 24845968 -94898930 + L1MB4 LINE L1 6012 6180 0 21 57 0 0 chr13 24846598 24846633 -94898265 + AT_rich Low_complexity Low_complexity 1 35 0 262 285 57 55 chr13 24846741 24846872 -94898026 + MIR SINE MIR 51 183 -65 2062 141 20 3 chr13 24846998 24847339 -94897559 + MER7A DNA MER2_type 2 346 0 30 27 0 0 chr13 24847788 24847825 -94897073 + AT_rich Low_complexity Low_complexity 1 37 0 38 51 0 0 chr13 24848969 24849028 -94895870 + AT_rich Low_complexity Low_complexity 1 59 0 2360 77 0 3 chr13 24849067 24849377 -94895521 - AluY SINE Alu -2 309 1 24 53 0 0 chr13 24851054 24851092 -94893806 + AT_rich Low_complexity Low_complexity 1 38 0 2139 105 33 18 chr13 24851339 24851671 -94893227 + MER1B DNA MER1_type 1 337 0 2241 102 0 3 chr13 24852195 24852499 -94892399 + AluSg1 SINE Alu 1 303 -6 822 210 17 17 chr13 24852977 24853153 -94891745 + MER97b DNA MER1_type? 2 177 -876 2093 174 22 29 chr13 24854464 24854878 -94890020 - MLT2D LTR ERVL 0 414 4 2294 76 20 13 chr13 24854881 24855183 -94889715 + AluY SINE Alu 1 304 -7 1958 126 3 13 chr13 24855391 24855693 -94889205 + L1MB3 LINE L1 5533 5831 -352 1342 156 15 0 chr13 24855693 24855898 -94889000 + AluJo SINE Alu 86 293 -19 1681 96 123 15 chr13 24855918 24856242 -94888656 + L1MB3 LINE L1 5821 6179 -4 2159 134 0 3 chr13 24856569 24856876 -94888022 - AluSx SINE Alu -6 306 1 822 161 0 0 chr13 24857040 24857158 -94887740 + FLAM_C SINE Alu 7 124 -19 295 279 74 49 chr13 24857452 24857574 -94887324 + L2 LINE L2 3147 3271 -1 2104 168 6 6 chr13 24858199 24858562 -94886336 - MER47A DNA MER2_type -2 364 2 881 135 0 0 chr13 24858616 24858790 -94886108 - FLAM_C SINE Alu 0 174 1 2812 178 23 48 chr13 24859010 24859072 -94885826 - MLT2B3 LTR ERVL 0 554 492 494 70 14 0 chr13 24859072 24859143 -94885755 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 2812 178 23 48 chr13 24859143 24859648 -94885250 - MLT2B3 LTR ERVL -62 492 1 21 0 0 0 chr13 24859854 24859875 -94885023 + AT_rich Low_complexity Low_complexity 1 21 0 2167 82 0 24 chr13 24859915 24860206 -94884692 + AluY SINE Alu 16 299 -12 751 167 0 53 chr13 24860380 24860530 -94884368 - FLAM_C SINE Alu -1 142 1 236 309 21 53 chr13 24860931 24861025 -94883873 - MIR SINE MIR -76 132 42 550 230 86 89 chr13 24861025 24861282 -94883616 - MER112 DNA MER1_type 0 260 5 26 0 0 0 chr13 24863420 24863446 -94881452 + AT_rich Low_complexity Low_complexity 1 26 0 331 191 119 0 chr13 24864315 24864399 -94880499 + MIR SINE MIR 52 145 -117 389 331 8 16 chr13 24864497 24864618 -94880280 + L2 LINE L2 3194 3313 0 419 353 111 16 chr13 24865062 24865252 -94879646 + L2 LINE L2 2553 2760 -554 559 207 21 14 chr13 24865317 24865462 -94879436 - MER104 DNA Tc2 -32 148 3 612 251 72 32 chr13 24865664 24865943 -94878955 - L1M4 LINE L1 -2225 3921 3632 1183 143 4 78 chr13 24866009 24866239 -94878659 + AluJb SINE Alu 1 213 -99 2000 136 0 3 chr13 24866690 24866984 -94877914 - AluSx SINE Alu -19 293 1 1478 170 50 40 chr13 24866984 24867284 -94877614 - AluJb SINE Alu -9 303 1 290 348 0 0 chr13 24867489 24867578 -94877320 - L2 LINE L2 -568 2746 2658 222 213 11 96 chr13 24868123 24868217 -94876681 + MIR SINE MIR 66 151 -57 215 211 28 28 chr13 24868549 24868620 -94876278 + CT-rich Low_complexity Low_complexity 4 74 0 194 357 85 39 chr13 24870888 24871017 -94873881 - L2 LINE L2 -6 3266 3132 333 313 48 54 chr13 24871069 24871216 -94873682 + MIR3 SINE MIR 55 200 -8 1781 166 7 7 chr13 24871958 24872266 -94872632 + AluJb SINE Alu 3 310 -2 1217 237 177 28 chr13 24872282 24872864 -94872034 - HAL1b LINE L1 -76 1272 604 975 280 131 32 chr13 24872990 24874093 -94870805 - HAL1 LINE L1 -632 1875 586 427 311 90 0 chr13 24874221 24874388 -94870510 + L2 LINE L2 2946 3127 -186 346 164 44 0 chr13 24874719 24874809 -94870089 + L1MD3 LINE L1 7725 7992 -3 181 324 29 15 chr13 24875434 24875502 -94869396 - L2 LINE L2 -95 3218 3150 2161 108 10 0 chr13 24875667 24875963 -94868935 - AluSx SINE Alu -13 299 1 2176 124 0 0 chr13 24876219 24876526 -94868372 + AluSx SINE Alu 1 307 -5 764 184 0 0 chr13 24877784 24877909 -94866989 - FLAM_A SINE Alu -8 125 1 188 300 0 0 chr13 24878562 24878612 -94866286 - L2 LINE L2 -6 3266 3217 2209 109 0 3 chr13 24878828 24879130 -94865768 - AluSg SINE Alu -9 301 1 24 0 0 0 chr13 24879379 24879403 -94865495 + AT_rich Low_complexity Low_complexity 1 24 0 225 211 0 0 chr13 24879810 24879867 -94865031 + T-rich Low_complexity Low_complexity 1 57 0 445 308 33 0 chr13 24880922 24881042 -94863856 - L2 LINE L2 -1 3312 3189 908 94 8 8 chr13 24881710 24881837 -94863061 + AluSp SINE Alu 38 164 -149 1142 103 0 24 chr13 24881843 24882008 -94862890 + AluSp SINE Alu 139 299 -14 22 35 0 0 chr13 24883367 24883396 -94861502 + AT_rich Low_complexity Low_complexity 1 29 0 247 257 14 0 chr13 24884556 24884626 -94860272 + CT-rich Low_complexity Low_complexity 2 72 0 2193 101 28 0 chr13 24885198 24885484 -94859414 + AluSc SINE Alu 1 294 -15 323 336 39 0 chr13 24885712 24885840 -94859058 + MER5A DNA MER1_type 57 189 0 809 258 47 13 chr13 24885956 24886189 -94858709 - MIR SINE MIR 0 262 22 536 231 142 35 chr13 24886245 24886414 -94858484 + MER3 DNA MER1_type 1 187 -22 497 273 145 18 chr13 24888092 24888319 -94856579 + MIR SINE MIR 1 256 -6 343 268 255 6 chr13 24888323 24888480 -94856418 + MIR SINE MIR 1 196 -66 243 333 83 0 chr13 24888510 24888606 -94856292 - MIR SINE MIR -133 129 26 431 205 4 19 chr13 24889544 24889784 -94855114 + AluJo SINE Alu 1 297 -15 2194 117 10 0 chr13 24892155 24892464 -94852434 - AluSx SINE Alu 0 312 1 252 331 91 34 chr13 24892686 24892861 -94852037 + L2 LINE L2 2110 2294 -1020 306 260 82 34 chr13 24892880 24893026 -94851872 + L2 LINE L2 3073 3225 -88 631 279 205 52 chr13 24893042 24893814 -94851084 + L2 LINE L2 2156 3126 -187 2333 101 0 0 chr13 24893814 24894110 -94850788 + AluSx SINE Alu 1 296 -16 631 279 205 52 chr13 24894110 24894333 -94850565 + L2 LINE L2 3126 3313 0 269 239 42 0 chr13 24894333 24894404 -94850494 + L2 LINE L2 2301 2374 -940 502 223 7 0 chr13 24894418 24894557 -94850341 - AluJb SINE Alu 0 312 173 331 321 3 20 chr13 24894575 24894797 -94850101 + C-rich Low_complexity Low_complexity 1 218 0 1753 118 8 0 chr13 24895081 24895327 -94849571 - AluSx SINE Alu -64 248 1 858 129 0 0 chr13 24895562 24895678 -94849220 + FLAM_C SINE Alu 1 116 -17 306 0 0 0 chr13 24895680 24895714 -94849184 + (CA)n Simple_repeat Simple_repeat 2 35 0 1787 161 0 24 chr13 24896162 24896454 -94848444 - AluJo SINE Alu -26 286 2 436 308 86 69 chr13 24896885 24897153 -94847745 - L2 LINE L2 0 3313 3032 636 65 13 0 chr13 24897153 24897230 -94847668 - MADE1 DNA Mariner 0 80 3 436 308 86 69 chr13 24897230 24897439 -94847459 - L2 LINE L2 -281 3032 2828 666 263 82 73 chr13 24897678 24898252 -94846646 + L2 LINE L2 2621 3184 -129 187 279 221 19 chr13 24898300 24898404 -94846494 + MIR SINE MIR 28 152 -110 497 222 152 41 chr13 24898516 24898687 -94846211 - MIR SINE MIR -42 220 31 530 353 27 20 chr13 24899380 24899675 -94845223 + LTR16C LTR ERVL 193 489 -2 985 230 59 0 chr13 24899995 24900234 -94844664 + MERVL LTR ERVL 2427 2679 -2806 2835 206 180 9 chr13 24900242 24901019 -94843879 + L1M4c LINE L1 27 936 -5448 1250 115 6 0 chr13 24901019 24901193 -94843705 + AluSc SINE Alu 132 306 -3 776 211 66 9 chr13 24901200 24901413 -94843485 + L1M4c LINE L1 923 1147 -5237 * 1864 190 37 19 chr13 24901412 24902000 -94842898 + L1M4c LINE L1 2121 2716 -3666 2272 219 30 52 chr13 24902036 24902632 -94842266 + L1M4c LINE L1 4057 4636 -1746 2153 139 0 0 chr13 24902632 24902933 -94841965 + AluSx SINE Alu 1 301 -11 2272 219 30 52 chr13 24902933 24903045 -94841853 + L1M4c LINE L1 4636 4749 -1633 1160 203 61 12 chr13 24903138 24903384 -94841514 - AluJo SINE Alu -10 302 45 279 54 0 0 chr13 24903384 24903421 -94841477 + (TTA)n Simple_repeat Simple_repeat 1 37 0 366 194 0 0 chr13 24903421 24903493 -94841405 - AluSp/q SINE Alu 0 303 232 315 83 0 0 chr13 24903498 24903546 -94841352 - AluY SINE Alu 0 302 255 1702 67 0 5 chr13 24903546 24903755 -94841143 - AluY SINE Alu -103 208 1 1810 125 0 0 chr13 24903755 24903994 -94840904 - AluSx SINE Alu -72 240 1 361 239 110 31 chr13 24903996 24904159 -94840739 - L1MEc LINE L1 -5105 1291 1116 2228 293 74 22 chr13 24904175 24904236 -94840662 - L1MEc LINE L1 -5380 1016 960 14954 130 42 26 chr13 24904236 24906169 -94838729 + Tigger1 DNA MER2_type 1 1902 -516 2424 77 3 7 chr13 24906169 24906468 -94838430 - AluSx SINE Alu -12 300 3 14954 130 42 26 chr13 24906468 24906793 -94838105 + Tigger1 DNA MER2_type 1902 2301 -117 1536 165 16 0 chr13 24906793 24907041 -94837857 - AluJo SINE Alu -17 295 44 14954 130 42 26 chr13 24907041 24907161 -94837737 + Tigger1 DNA MER2_type 2301 2418 0 2228 293 74 22 chr13 24907161 24908031 -94836867 - L1MEc LINE L1 -5436 960 37 2474 68 0 13 chr13 24908711 24909018 -94835880 - AluSg1 SINE Alu -6 303 1 886 173 32 16 chr13 24909212 24909397 -94835501 - MER53 DNA DNA 0 189 2 390 129 0 0 chr13 24910510 24910572 -94834326 + (T)n Simple_repeat Simple_repeat 1 62 0 234 225 0 56 chr13 24911275 24911346 -94833552 + MIR3 SINE MIR 95 161 -47 187 314 14 14 chr13 24911681 24911751 -94833147 + L2 LINE L2 3184 3253 -19 379 303 73 6 chr13 24911822 24911987 -94832911 - MIR SINE MIR -71 191 16 259 257 46 46 chr13 24912090 24912199 -94832699 + MLT1L LTR MaLR 495 603 -12 247 286 18 0 chr13 24913426 24913482 -94831416 - L2 LINE L2 -18 3254 3198 308 224 153 10 chr13 24914047 24914145 -94830753 - MER5A DNA MER1_type -59 130 19 335 289 91 25 chr13 24914269 24914390 -94830508 + MIR3 SINE MIR 41 169 -39 576 256 58 0 chr13 24914468 24914627 -94830271 + FLAM_A SINE Alu 4 169 0 7642 205 28 23 chr13 24914629 24916758 -94828140 + L1M1 LINE L1 3071 5211 -2354 958 179 0 0 chr13 24916762 24916930 -94827968 + L1M1 LINE L1 5533 5700 -1865 * 4305 190 3 23 chr13 24916903 24917759 -94827139 + L1P LINE L1 4707 5545 -2020 266 286 59 59 chr13 24918073 24918192 -94826706 - MER5A DNA MER1_type -50 139 21 339 316 76 13 chr13 24918296 24918454 -94826444 + MIR3 SINE MIR 34 201 -7 402 224 147 39 chr13 24918706 24918862 -94826036 + MER5B DNA MER1_type 6 178 0 281 296 96 30 chr13 24919085 24919220 -94825678 + MIR SINE MIR 63 206 -56 3080 224 73 24 chr13 24919289 24920751 -94824147 + L1ME1 LINE L1 5967 7582 -3 695 342 121 35 chr13 24920753 24921770 -94823128 - L2 LINE L2 -13 3259 2148 6279 233 21 17 chr13 24921833 24924283 -94820615 + L1MA5A LINE L1 4 2615 -4174 * 8600 129 21 21 chr13 24924282 24925914 -94818984 + L1MA5A LINE L1 4505 6139 -800 1898 129 30 0 chr13 24925914 24926185 -94818713 + AluSx SINE Alu 1 279 -33 8600 129 21 21 chr13 24926185 24926981 -94817917 + L1MA5A LINE L1 6139 6934 -5 414 337 143 19 chr13 24927002 24927616 -94817282 - L2 LINE L2 -1239 2075 1386 229 73 49 0 chr13 24927766 24927807 -94817091 + AluSx SINE Alu 260 302 0 236 387 93 17 chr13 24927812 24928114 -94816784 - L2 LINE L2 -2671 643 319 617 288 80 74 chr13 24928777 24929142 -94815756 + L2 LINE L2 2897 3263 -9 320 93 0 19 chr13 24929144 24929198 -94815700 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 209 303 45 34 chr13 24929230 24929319 -94815579 + MIR SINE MIR 13 102 -160 2078 139 7 0 chr13 24929756 24930057 -94814841 - AluSx SINE Alu -9 303 1 1535 236 111 39 chr13 24930612 24931079 -94813819 + MLT1D LTR MaLR 1 501 -4 465 305 15 8 chr13 24931299 24931430 -94813468 - MIR SINE MIR -50 212 81 640 252 138 24 chr13 24931543 24931668 -94813230 + MIR SINE MIR 13 122 -140 201 39 0 0 chr13 24931668 24931694 -94813204 + (TGG)n Simple_repeat Simple_repeat 1 26 0 640 252 138 24 chr13 24931694 24931778 -94813120 + MIR SINE MIR 122 246 -16 237 303 0 0 chr13 24932665 24932731 -94812167 + T-rich Low_complexity Low_complexity 4 69 0 1550 221 65 3 chr13 24933285 24933841 -94811057 + L1MA10 LINE L1 5035 5609 -703 16215 161 24 54 chr13 24933847 24938169 -94806729 + L1MA3 LINE L1 11 3954 -3770 183 80 0 0 chr13 24938169 24938194 -94806704 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 16215 161 24 54 chr13 24938194 24941856 -94803042 + L1MA3 LINE L1 3954 7724 0 3404 166 16 55 chr13 24941856 24942620 -94802278 + L1MA10 LINE L1 5594 6332 -2 417 239 66 80 chr13 24942930 24943143 -94801755 + MER63A DNA MER1_type 1 210 0 247 298 97 0 chr13 24944365 24944489 -94800409 - MIR SINE MIR -19 243 108 189 107 0 0 chr13 24944553 24944581 -94800317 + (TG)n Simple_repeat Simple_repeat 1 28 0 304 355 43 7 chr13 24944589 24944727 -94800171 + L2 LINE L2 3129 3271 -1 393 224 66 0 chr13 24946605 24946757 -94798141 + (TA)n Simple_repeat Simple_repeat 2 163 0 2078 96 0 84 chr13 24947306 24947639 -94797259 - AluSg SINE Alu -5 305 1 663 347 89 44 chr13 24947712 24948285 -94796613 + L1M4 LINE L1 3390 3988 -2158 313 240 156 19 chr13 24948569 24948723 -94796175 + L1ME4a LINE L1 5933 6107 -14 2252 95 0 7 chr13 24949407 24949701 -94795197 - AluSx SINE Alu -20 292 1 467 247 7 91 chr13 24950409 24950563 -94794335 + MIR SINE MIR 1 141 -121 469 301 146 69 chr13 24950611 24951170 -94793728 + L2 LINE L2 2711 3312 -1 290 162 103 15 chr13 24951536 24951604 -94793294 + L1ME4a LINE L1 5574 5647 -474 373 315 103 14 chr13 24951612 24951825 -94793073 + L1ME4a LINE L1 5684 5915 -206 274 282 74 13 chr13 24951845 24951994 -94792904 + L1ME4a LINE L1 5964 6121 0 940 289 44 22 chr13 24952118 24952482 -94792416 + L1MC4a LINE L1 5512 5883 -1925 246 205 48 84 chr13 24954002 24954085 -94790813 + L2 LINE L2 3137 3216 -56 232 200 0 0 chr13 24954932 24954977 -94789921 - MER117 DNA MER1_type -152 45 1 265 360 0 0 chr13 24956570 24956659 -94788239 + L2 LINE L2 2658 2746 -568 1070 104 0 0 chr13 25056665 25056800 -94688098 + AluSg/x SINE Alu 156 290 -22 1896 134 0 24 chr13 25056825 25057115 -94687783 + AluSx SINE Alu 26 308 -4 463 278 203 41 chr13 25058856 25059094 -94685804 + L1ME4a LINE L1 5577 5775 -346 1940 119 59 7 chr13 25059094 25059380 -94685518 + AluSg SINE Alu 1 301 -9 463 278 203 41 chr13 25059380 25059613 -94685285 + L1ME4a LINE L1 5775 6117 -4 475 307 121 59 chr13 25059666 25060037 -94684861 + L3 LINE CR1 877 1270 -307 490 286 14 21 chr13 25060358 25060498 -94684400 - L2 LINE L2 0 3313 3175 502 222 24 16 chr13 25060501 25060627 -94684271 - MIR SINE MIR -46 216 90 695 269 82 26 chr13 25061498 25061766 -94683132 - L2 LINE L2 -4 3309 3027 373 230 87 24 chr13 25061804 25061930 -94682968 + MIR SINE MIR 61 194 -68 1646 108 0 5 chr13 25061995 25062209 -94682689 + AluSq SINE Alu 1 213 -100 382 94 166 1 chr13 25062213 25062300 -94682598 + L1MC2 LINE L1 6241 6343 -1 2110 148 0 0 chr13 25062337 25062647 -94682251 - AluSx SINE Alu -2 310 1 1402 92 0 0 chr13 25063469 25063642 -94681256 - AluSq SINE Alu -118 195 23 397 286 101 51 chr13 25063756 25063934 -94680964 - HAL1 LINE L1 -2286 221 35 313 250 0 34 chr13 25063934 25064022 -94680876 - LTR39 LTR ERV1 0 783 699 1160 203 18 31 chr13 25064085 25064371 -94680527 - LTR39 LTR ERV1 -501 282 1 637 76 0 0 chr13 25064387 25064466 -94680432 + AluS SINE Alu 2 80 -233 367 290 129 8 chr13 25064854 25064978 -94679920 + MIR SINE MIR 119 257 -5 248 347 60 40 chr13 25065472 25065671 -94679227 + L3 LINE CR1 64 266 -1311 202 350 52 0 chr13 25065804 25065901 -94678997 - MIR SINE MIR 0 262 161 428 271 0 8 chr13 25066468 25066586 -94678312 - LTR33 LTR ERVL -11 510 394 290 243 0 14 chr13 25066813 25066887 -94678011 - LTR33 LTR ERVL -448 73 1 2067 123 45 0 chr13 25067053 25067345 -94677553 + AluSx SINE Alu 1 305 -7 180 111 0 0 chr13 25067354 25067381 -94677517 + (A)n Simple_repeat Simple_repeat 1 27 0 443 244 36 48 chr13 25067381 25067549 -94677349 + Charlie8 DNA MER1_type 2 167 -2250 403 295 122 58 chr13 25067992 25068031 -94676867 + L2 LINE L2 2730 2765 -507 973 207 31 45 chr13 25068031 25068253 -94676645 + MER20 DNA MER1_type 1 219 0 403 295 122 58 chr13 25068253 25068665 -94676233 + L2 LINE L2 2765 3223 -49 235 362 80 55 chr13 25069972 25070171 -94674727 - MIR3 SINE MIR -3 205 2 520 278 112 18 chr13 25070209 25070445 -94674453 + MIR SINE MIR 9 255 -7 1051 166 8 81 chr13 25070695 25070771 -94674127 + L1MA3 LINE L1 6066 6146 -159 1849 191 3 0 chr13 25070771 25071075 -94673823 + AluJb SINE Alu 1 305 -7 1051 166 8 81 chr13 25071075 25071257 -94673641 + L1MA3 LINE L1 6146 6305 0 1036 291 121 14 chr13 25071266 25071695 -94673203 - L2 LINE L2 -342 2972 2498 2039 165 39 31 chr13 25071697 25072242 -94672656 + MLT2A2 LTR ERVL 1 554 0 441 287 99 22 chr13 25072246 25072427 -94672471 - L2 LINE L2 -818 2496 2302 1909 160 7 114 chr13 25072427 25072883 -94672015 + MLT2D LTR ERVL 8 414 0 972 219 79 4 chr13 25072953 25073218 -94671680 - MER33 DNA MER1_type -39 285 1 664 274 148 56 chr13 25073220 25073673 -94671225 - L2 LINE L2 -1094 2220 1695 2232 110 3 13 chr13 25073673 25073974 -94670924 - AluSx SINE Alu -13 299 2 664 274 148 56 chr13 25073974 25074129 -94670769 - L2 LINE L2 -1619 1695 1556 521 273 11 23 chr13 25074279 25074455 -94670443 + MER5B DNA MER1_type 2 175 -3 192 121 0 190 chr13 25074892 25074950 -94669948 - L2 LINE L2 0 3313 3267 262 260 135 31 chr13 25075246 25075342 -94669556 - L2 LINE L2 -30 3242 3137 21 0 0 0 chr13 25077341 25077362 -94667536 + AT_rich Low_complexity Low_complexity 1 21 0 2471 84 3 0 chr13 25079152 25079462 -94665436 - AluY SINE Alu 0 311 1 1895 180 103 5 chr13 25079878 25080256 -94664642 - Tigger7 DNA MER2_type -2065 422 8 543 168 0 0 chr13 25080353 25080448 -94664450 - AluSg/x SINE Alu -2 308 214 294 192 0 0 chr13 25080475 25080527 -94664371 + HERVK LTR ERVK 439 490 -6753 854 170 18 47 chr13 25080530 25080701 -94664197 + LTR5 LTR ERVK 804 969 0 1218 195 46 8 chr13 25080701 25080963 -94663935 + HERVK LTR ERVK 1 272 -6971 1187 157 0 0 chr13 25080945 25081143 -94663755 + HERVK LTR ERVK 423 620 -6623 * 2192 141 0 25 chr13 25081474 25081794 -94663104 + AluSx SINE Alu 1 312 0 1057 241 124 37 chr13 25081883 25082085 -94662813 + MLT1C LTR MaLR 1 184 -283 1901 161 0 0 chr13 25082085 25082370 -94662528 + AluJb SINE Alu 1 285 -27 1057 241 124 37 chr13 25082370 25082595 -94662303 + MLT1C LTR MaLR 184 465 -2 1740 126 0 4 chr13 25083552 25083798 -94661100 - AluSx SINE Alu -8 304 60 1706 94 76 10 chr13 25083798 25084124 -94660774 + LTR7 LTR ERV1 1 408 -42 465 94 0 0 chr13 25084136 25084200 -94660698 - AluJ/FLAM SINE Alu -247 65 2 447 355 6 6 chr13 25085168 25085334 -94659564 + MIR3 SINE MIR 37 202 -6 2129 113 3 7 chr13 25085513 25085806 -94659092 + AluSx SINE Alu 1 292 -20 205 304 98 54 chr13 25087729 25087841 -94657057 + MIR SINE MIR 53 169 -93 2031 137 0 0 chr13 25090330 25090614 -94654284 + AluSx SINE Alu 11 294 -18 238 185 0 92 chr13 25091128 25091193 -94653705 + MST-int LTR MaLR 673 731 -920 346 155 31 210 chr13 25091280 25091571 -94653327 - L1MC4 LINE L1 0 8042 7804 639 240 91 68 chr13 25091964 25092303 -94652595 - MLT1G LTR MaLR -242 348 1 192 319 37 111 chr13 25092334 25092469 -94652429 + L2 LINE L2 3123 3247 -25 2331 107 10 0 chr13 25092489 25092798 -94652100 + AluSx SINE Alu 1 312 0 1321 227 40 73 chr13 25092987 25093467 -94651431 + MER101 LTR ERV1 11 474 0 2042 128 0 20 chr13 25094522 25094828 -94650070 + AluSx SINE Alu 1 300 -12 2642 37 0 0 chr13 25095093 25095388 -94649510 + AluY SINE Alu 1 295 -16 1601 197 0 3 chr13 25095402 25095697 -94649201 + AluJo SINE Alu 4 297 -15 1464 189 94 31 chr13 25095757 25095952 -94648946 - MER2 DNA MER2_type 0 345 121 2022 122 6 45 chr13 25095952 25096264 -94648634 - AluSx SINE Alu -12 300 1 1464 189 94 31 chr13 25096264 25096386 -94648512 - MER2 DNA MER2_type -224 121 8 2012 158 28 50 chr13 25096510 25096909 -94647989 - MLT1B LTR MaLR 0 390 1 311 0 26 0 chr13 25097086 25097125 -94647773 + (CA)n Simple_repeat Simple_repeat 2 41 0 1815 146 43 67 chr13 25097420 25097811 -94647087 + MLT1B LTR MaLR 9 390 0 387 348 42 70 chr13 25098312 25098671 -94646227 + L2 LINE L2 2906 3254 -18 209 237 0 0 chr13 25099758 25099796 -94645102 + L2 LINE L2 3215 3252 -20 296 260 207 12 chr13 25100248 25100417 -94644481 - MIR SINE MIR -12 250 49 220 238 53 19 chr13 25100485 25100592 -94644306 + MIR SINE MIR 83 202 -6 2067 218 98 33 chr13 25101630 25102232 -94642666 - LTR48B LTR ERV1 0 644 4 2546 53 7 3 chr13 25102255 25102555 -94642343 - AluY SINE Alu -10 301 1 1499 213 145 43 chr13 25103176 25103604 -94641294 + MLT2B1 LTR ERVL 3 386 -134 1951 160 71 0 chr13 25103604 25103929 -94640969 + MER7A DNA MER2_type 1 346 0 384 22 0 0 chr13 25103929 25103974 -94640924 + (TA)n Simple_repeat Simple_repeat 1 45 0 1499 213 145 43 chr13 25103974 25104014 -94640884 + MLT2B1 LTR ERVL 385 520 0 25 0 0 0 chr13 25104060 25104085 -94640813 + AT_rich Low_complexity Low_complexity 1 25 0 204 40 0 0 chr13 25104291 25104316 -94640582 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 25104925 25104946 -94639952 + AT_rich Low_complexity Low_complexity 1 21 0 975 169 0 0 chr13 25105529 25105683 -94639215 + FRAM SINE Alu 5 158 -8 2090 117 10 10 chr13 25106157 25106291 -94638607 + AluJb SINE Alu 1 134 -178 2204 110 7 3 chr13 25106291 25106582 -94638316 + AluSq SINE Alu 1 292 -21 2090 117 10 10 chr13 25106582 25106746 -94638152 + AluJb SINE Alu 133 299 -13 186 118 0 0 chr13 25106821 25106855 -94638043 + (TG)n Simple_repeat Simple_repeat 1 34 0 479 312 32 0 chr13 25106960 25107114 -94637784 + MIR SINE MIR 14 172 -90 322 272 126 0 chr13 25107830 25107933 -94636965 + MIR SINE MIR 66 181 -81 2132 125 32 35 chr13 25108225 25108269 -94636629 - L1MB2 LINE L1 -7 6164 6121 219 36 0 0 chr13 25108269 25108297 -94636601 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2415 61 0 0 chr13 25108297 25108577 -94636321 - AluY SINE Alu -31 280 1 2132 125 32 35 chr13 25108577 25108907 -94635991 - L1MB2 LINE L1 -48 6123 5790 666 133 71 0 chr13 25109095 25109208 -94635690 - L1MB2 LINE L1 -384 5799 5679 353 276 18 29 chr13 25111959 25112129 -94632769 + L1ME4a LINE L1 5954 6121 0 879 216 22 35 chr13 25112325 25112557 -94632341 + MIR SINE MIR 33 261 -1 890 132 0 22 chr13 25112661 25112797 -94632101 - FLAM_C SINE Alu 0 133 1 1552 205 10 3 chr13 25116630 25116918 -94627980 - AluJo SINE Alu -22 290 1 216 209 0 0 chr13 25117391 25117434 -94627464 + A-rich Low_complexity Low_complexity 2 44 0 2136 103 0 31 chr13 25117434 25117753 -94627145 + AluSx SINE Alu 1 309 -3 237 229 43 29 chr13 25117764 25117834 -94627064 - Charlie8 DNA MER1_type -2343 74 4 306 0 0 0 chr13 25118408 25118442 -94626456 + (CA)n Simple_repeat Simple_repeat 2 35 0 191 336 80 24 chr13 25118516 25118641 -94626257 + L2 LINE L2 2926 3057 -256 2251 123 0 0 chr13 25119985 25120294 -94624604 - AluSc SINE Alu 0 309 1 232 250 17 0 chr13 25120626 25120686 -94624212 + MIR SINE MIR 81 141 -121 184 268 18 0 chr13 25121510 25121566 -94623332 - MIR SINE MIR -61 147 91 2113 128 131 11 chr13 25121951 25122333 -94622565 + MSTA LTR MaLR 1 428 0 339 266 187 48 chr13 25122469 25122758 -94622140 - L2 LINE L2 -4 3268 2940 226 247 221 19 chr13 25123184 25123338 -94621560 + MIR SINE MIR 78 262 0 477 205 98 71 chr13 25124455 25124550 -94620348 + L1MC4 LINE L1 7813 7904 -138 2357 64 3 10 chr13 25124550 25124847 -94620051 + AluY SINE Alu 1 295 -16 477 205 98 71 chr13 25124847 25124975 -94619923 + L1MC4 LINE L1 7904 8042 0 211 74 0 0 chr13 25124998 25125025 -94619873 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 397 62 31 15 chr13 25125025 25125090 -94619808 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1622 116 0 4 chr13 25125190 25125422 -94619476 + AluY SINE Alu 66 296 -15 341 228 132 0 chr13 25125436 25125550 -94619348 + L1MC4 LINE L1 7914 8042 0 211 74 0 0 chr13 25125573 25125600 -94619298 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 703 66 19 9 chr13 25125600 25125706 -94619192 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1759 185 6 13 chr13 25125707 25126021 -94618877 - AluJo SINE Alu 0 312 1 3327 153 35 56 chr13 25126167 25126848 -94618050 - L1MC2 LINE L1 -377 5967 5301 521 281 63 74 chr13 25126961 25127423 -94617475 + MLT1J LTR MaLR 25 481 -30 197 369 29 39 chr13 25127610 25127713 -94617185 - L2 LINE L2 -33 3280 3179 242 175 79 0 chr13 25128520 25128583 -94616315 + CT-rich Low_complexity Low_complexity 4 71 0 21 71 0 0 chr13 25129233 25129275 -94615623 + GC_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr13 25129334 25129360 -94615538 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr13 25129529 25129560 -94615338 + GC_rich Low_complexity Low_complexity 1 31 0 2554 70 0 3 chr13 25131396 25131710 -94613188 - AluSq SINE Alu 0 313 1 235 343 111 0 chr13 25132101 25132200 -94612698 - L2 LINE L2 -12 3260 3151 239 327 136 32 chr13 25132638 25132889 -94612009 - L2 LINE L2 -414 2900 2624 1809 196 159 25 chr13 25133205 25133714 -94611184 + MER119 DNA MER1_type 7 583 0 223 338 31 12 chr13 25133742 25133902 -94610996 - L2 LINE L2 -1108 2206 2044 312 139 14 14 chr13 25134605 25134677 -94610221 + C-rich Low_complexity Low_complexity 1 72 0 254 0 83 0 chr13 25134691 25134727 -94610171 + T-rich Low_complexity Low_complexity 3 41 0 717 120 0 0 chr13 25135025 25135125 -94609773 - FLAM_C SINE Alu -12 131 32 1949 118 37 0 chr13 25135180 25135451 -94609447 + AluSx SINE Alu 2 282 -30 26 30 0 0 chr13 25135587 25135620 -94609278 + AT_rich Low_complexity Low_complexity 1 33 0 267 317 49 8 chr13 25135881 25136004 -94608894 - L2 LINE L2 -6 3307 3180 186 196 0 87 chr13 25136504 25136550 -94608348 + L2 LINE L2 3267 3308 -5 249 161 0 71 chr13 25136812 25136868 -94608030 - AluJo SINE Alu -165 137 86 * 259 167 21 0 chr13 25136837 25136885 -94608013 - Alu SINE Alu -20 282 234 614 167 0 0 chr13 25136888 25136996 -94607902 + AluSg/x SINE Alu 195 302 -7 352 268 180 10 chr13 25138456 25138650 -94606248 - MLT1J2 LTR MaLR -223 227 1 193 250 87 65 chr13 25138831 25138923 -94605975 + MER5C DNA MER1_type 1 94 -230 781 248 40 49 chr13 25139191 25139417 -94605481 + MER58A DNA MER1_type 1 224 0 29 0 0 0 chr13 25139489 25139518 -94605380 + AT_rich Low_complexity Low_complexity 1 29 0 210 258 0 0 chr13 25139569 25139631 -94605267 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 782 249 130 38 chr13 25139631 25140066 -94604832 - L2 LINE L2 -208 3105 2639 863 273 131 28 chr13 25141000 25141755 -94603143 + L1M4 LINE L1 2576 3408 -2738 * 1848 249 125 28 chr13 25141754 25141797 -94603101 - L1MC4a LINE L1 -1541 6267 6230 2268 90 0 7 chr13 25141797 25142096 -94602802 + AluSq SINE Alu 1 297 -16 1848 249 125 28 chr13 25142096 25142973 -94601925 - L1MC4a LINE L1 -1578 6230 5258 878 315 74 47 chr13 25143129 25144371 -94600527 - L1MC4a LINE L1 -1088 5058 3757 2044 106 47 0 chr13 25144371 25144646 -94600252 - AluSx SINE Alu -24 288 1 878 315 74 47 chr13 25144646 25145080 -94599818 - L1MC4a LINE L1 -2389 3757 3336 329 132 29 0 chr13 25145156 25145224 -94599674 - L1MB3 LINE L1 -1 6182 6113 435 76 0 0 chr13 25145229 25145295 -94599603 - L1 LINE L1 -966 5180 5115 617 62 0 0 chr13 25145668 25145748 -94599150 - AluS SINE Alu -233 80 1 233 298 53 7 chr13 25145748 25145899 -94598999 - L1P LINE L1 -2355 3791 3634 241 242 0 0 chr13 25146112 25146174 -94598724 - L1P LINE L1 -2741 3405 3344 372 103 29 0 chr13 25146257 25146325 -94598573 - L1MB3 LINE L1 -1 6182 6113 439 75 0 0 chr13 25146330 25146397 -94598501 - L1 LINE L1 -966 5180 5114 797 210 205 11 chr13 25146604 25146957 -94597941 - L1ME3A LINE L1 -24 6140 5724 490 332 34 12 chr13 25147366 25147644 -94597254 - L1MEc LINE L1 -3824 2398 2148 2350 84 0 0 chr13 25147733 25148031 -94596867 - AluY SINE Alu -13 298 1 312 263 111 47 chr13 25148145 25148335 -94596563 - HAL1b LINE L1 -501 847 646 482 213 142 0 chr13 25148354 25148481 -94596417 + MER105 DNA DNA 56 200 -4 621 293 47 89 chr13 25148492 25149201 -94595697 - HAL1b LINE L1 -744 1531 53 203 196 22 0 chr13 25149212 25149258 -94595640 + T-rich Low_complexity Low_complexity 3 49 0 317 308 58 0 chr13 25149324 25149444 -94595454 - MER5B DNA MER1_type -32 146 20 489 250 16 0 chr13 25149630 25149754 -94595144 - L1MD2 LINE L1 -18 6341 6216 858 176 72 21 chr13 25150627 25150820 -94594078 - L1MD2 LINE L1 -135 6224 6022 1002 204 43 88 chr13 25150820 25151218 -94593680 - L1M4 LINE L1 -1817 4329 3950 2094 184 76 4 chr13 25151231 25151703 -94593195 - MER73 LTR ERVL -12 632 127 434 151 143 8 chr13 25151755 25151881 -94593017 - L1M4 LINE L1 -2197 3949 3807 1448 174 8 11 chr13 25151883 25152147 -94592751 - AluJo SINE Alu 0 312 50 24 53 0 0 chr13 25152220 25152258 -94592640 + AT_rich Low_complexity Low_complexity 1 38 0 1496 99 12 62 chr13 25152789 25153031 -94591867 - MER30 DNA MER1_type 0 230 1 2456 83 3 3 chr13 25153507 25153819 -94591079 - AluSp SINE Alu 0 313 2 1818 185 3 7 chr13 25153824 25154127 -94590771 - AluJb SINE Alu -10 302 1 594 265 38 52 chr13 25155156 25155289 -94589609 + MIR SINE MIR 16 146 -116 2185 124 3 7 chr13 25155289 25155596 -94589302 + AluSx SINE Alu 1 306 -6 594 265 38 52 chr13 25155596 25155673 -94589225 + MIR SINE MIR 146 223 -39 250 255 202 11 chr13 25158455 25158549 -94586349 + L2 LINE L2 3151 3262 -10 387 309 75 15 chr13 25159154 25159543 -94585355 - L1M4 LINE L1 -1113 5033 4622 217 255 20 0 chr13 25159615 25159666 -94585232 + MIR SINE MIR 38 89 -119 1447 163 0 4 chr13 25159801 25160028 -94584870 + AluJb SINE Alu 86 311 -1 376 258 26 26 chr13 25161546 25161697 -94583201 - L1MD2 LINE L1 -2251 5557 5407 1893 158 21 0 chr13 25161699 25161990 -94582908 - AluJb SINE Alu -15 297 1 1978 254 106 40 chr13 25163605 25164743 -94580155 - L2 LINE L2 -1 3312 2102 1128 201 51 56 chr13 25165251 25165624 -94579274 - MLT1A2 LTR MaLR 0 374 4 427 275 77 34 chr13 25166447 25166654 -94578244 + L2 LINE L2 3098 3313 0 324 289 62 31 chr13 25166677 25166902 -94577996 - L1ME4a LINE L1 -238 5883 5652 21 36 0 0 chr13 25166994 25167022 -94577876 + AT_rich Low_complexity Low_complexity 1 28 0 246 312 65 39 chr13 25167206 25167360 -94577538 + L2 LINE L2 2326 2483 -831 204 357 31 10 chr13 25167962 25168060 -94576838 + L2 LINE L2 3173 3272 0 247 281 184 0 chr13 25168112 25168226 -94576672 - L1MCc LINE L1 -4638 2484 2350 * 3636 214 59 24 chr13 25168218 25169265 -94575633 - L1MD2 LINE L1 -2 6357 5274 728 264 107 63 chr13 25169276 25170024 -94574874 - L1MCc LINE L1 -4778 2344 1630 2051 130 10 7 chr13 25170024 25170331 -94574567 - AluSx SINE Alu -4 308 1 234 0 0 0 chr13 25170341 25170367 -94574531 + (TTG)n Simple_repeat Simple_repeat 2 27 0 728 264 107 63 chr13 25170367 25170381 -94574517 - L1MCc LINE L1 -5500 1622 1610 7256 26 25 0 chr13 25170381 25171353 -94573545 - L1PA4 LINE L1 -3 6152 5158 728 264 107 63 chr13 25171353 25171527 -94573371 - L1MCc LINE L1 -5512 1610 1129 1952 125 32 0 chr13 25171779 25172058 -94572840 - AluSx SINE Alu -24 288 1 1356 118 5 5 chr13 25172068 25172271 -94572627 - AluSg/x SINE Alu 0 312 110 505 284 16 37 chr13 25172365 25172608 -94572290 - L1MCc LINE L1 -5972 451 214 898 236 26 15 chr13 25173152 25173347 -94571551 + MIR SINE MIR 12 208 -54 285 342 51 8 chr13 25174971 25175120 -94569778 - MIR3 SINE MIR -67 141 3 703 163 16 31 chr13 25176442 25176571 -94568327 + FLAM_C SINE Alu 1 127 -16 278 231 82 82 chr13 25177014 25177161 -94567737 + MIR SINE MIR 66 212 -50 233 273 18 0 chr13 25178429 25178484 -94566414 - L2 LINE L2 -9 3304 3249 1717 181 6 22 chr13 25179189 25179218 -94565680 - AluJb SINE Alu -2 310 282 408 20 0 0 chr13 25179218 25179267 -94565631 + (TG)n Simple_repeat Simple_repeat 1 49 0 1717 181 6 22 chr13 25179267 25179552 -94565346 - AluJb SINE Alu -30 282 1 1481 129 63 94 chr13 25179723 25180073 -94564825 + MER44D DNA MER2_type 1 609 0 1403 189 120 53 chr13 25180179 25180524 -94564374 - LTR54B LTR ERV1 -1 497 114 1820 175 0 13 chr13 25180524 25180832 -94564066 - AluJb SINE Alu -8 304 1 1403 189 120 53 chr13 25180832 25180936 -94563962 - LTR54B LTR ERV1 -384 114 18 180 261 99 27 chr13 25181357 25181468 -94563430 + L2 LINE L2 3113 3231 -82 693 209 61 10 chr13 25182805 25183001 -94561897 - MER3 DNA MER1_type -2 207 2 745 149 15 30 chr13 25183933 25184067 -94560831 - FLAM_C SINE Alu 0 133 2 265 282 208 7 chr13 25184094 25184243 -94560655 + MIR SINE MIR 58 236 -26 253 367 66 53 chr13 25184934 25185160 -94559738 + L2 LINE L2 3044 3272 0 47 44 0 0 chr13 25186036 25186104 -94558794 + AT_rich Low_complexity Low_complexity 1 68 0 2130 104 3 17 chr13 25186384 25186682 -94558216 + AluY SINE Alu 1 294 -17 208 204 114 0 chr13 25186849 25186893 -94558005 + MIR SINE MIR 94 142 -66 701 229 64 4 chr13 25187212 25187448 -94557450 + L1M4 LINE L1 2786 3035 -3111 2241 109 0 13 chr13 25188190 25188503 -94556395 - AluSc SINE Alu 0 309 1 458 184 0 18 chr13 25188513 25188525 -94556373 - L1MA10 LINE L1 -2 6332 6321 3464 206 54 12 chr13 25188525 25189422 -94555476 - L1ME1 LINE L1 -5 6161 5229 759 216 83 10 chr13 25190413 25190617 -94554281 + MIR SINE MIR 13 231 -31 1826 136 38 35 chr13 25190625 25190992 -94553906 + THE1C LTR MaLR 6 373 -2 387 245 81 14 chr13 25191539 25191701 -94553197 - L1ME LINE L1 -396 5766 5587 23 0 0 0 chr13 25193297 25193320 -94551578 + AT_rich Low_complexity Low_complexity 1 23 0 207 384 81 0 chr13 25194080 25194166 -94550732 + L2 LINE L2 3102 3194 -78 508 249 40 90 chr13 25194292 25194493 -94550405 - MIR3 SINE MIR -15 193 3 1187 123 0 0 chr13 25195522 25195684 -94549214 + AluSg/x SINE Alu 132 293 -17 2617 250 91 53 chr13 25195787 25198119 -94546779 + L1MCc LINE L1 17 2258 -4683 2735 141 16 87 chr13 25198119 25198673 -94546225 - MLT2B2 LTR ERVL 0 515 1 2617 250 91 53 chr13 25198673 25198921 -94545977 + L1MCc LINE L1 2258 2495 -4446 2772 121 19 23 chr13 25198921 25199408 -94545490 - MER31A LTR ERV1 0 485 1 2617 250 91 53 chr13 25199408 25199837 -94545061 + L1MCc LINE L1 2495 3355 -3586 28 0 0 0 chr13 25200116 25200144 -94544754 + AT_rich Low_complexity Low_complexity 1 28 0 202 211 0 0 chr13 25200621 25200659 -94544239 + (TATG)n Simple_repeat Simple_repeat 4 41 0 1067 31 0 0 chr13 25200666 25200796 -94544102 + L1PA2 LINE L1 6026 6155 0 189 0 0 0 chr13 25200804 25200825 -94544073 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 445 316 72 35 chr13 25202187 25202729 -94542169 - HERV16 LTR ERVL -1494 3502 3158 36 23 0 0 chr13 25202872 25202915 -94541983 + AT_rich Low_complexity Low_complexity 1 43 0 36619 81 6 11 chr13 25203057 25206093 -94538805 - L1PA6 LINE L1 -1 6153 3103 2392 91 0 3 chr13 25206093 25206400 -94538498 - AluSp SINE Alu -7 306 1 36619 81 6 11 chr13 25206400 25209544 -94535354 - L1PA6 LINE L1 -3051 3103 11 705 342 47 2 chr13 25209569 25209978 -94534920 - HERV16 LTR ERVL -2564 3200 2774 282 314 58 35 chr13 25210797 25211023 -94533875 - LTR16B LTR ERVL -17 447 217 1468 151 177 57 chr13 25211641 25212026 -94532872 + MSTB1 LTR MaLR 2 432 0 206 280 96 56 chr13 25212313 25212438 -94532460 - L2 LINE L2 -7 3265 3136 1764 184 33 29 chr13 25212593 25213045 -94531853 - MER74A LTR ERVL -30 528 75 677 150 92 0 chr13 25213035 25213155 -94531743 - MSTB LTR MaLR -294 132 2 * 2161 114 7 16 chr13 25213295 25213602 -94531296 - AluSx SINE Alu -7 305 2 910 257 139 43 chr13 25213646 25214206 -94530692 - HAL1 LINE L1 -1628 879 266 3075 143 10 0 chr13 25214296 25214785 -94530113 - LOR1a LTR ERV1 -3 494 1 285 233 17 0 chr13 25215689 25215749 -94529149 + L2 LINE L2 3251 3311 -2 1903 208 36 32 chr13 25216771 25217267 -94527631 + MLT1D LTR MaLR 1 498 -7 270 209 70 12 chr13 25217375 25217461 -94527437 - MER5B DNA MER1_type 0 178 88 1645 218 11 6 chr13 25217977 25218340 -94526558 + MLT1A1 LTR MaLR 1 365 0 284 265 5 83 chr13 25218532 25218736 -94526162 + L1MCc LINE L1 1283 1470 -4953 491 243 58 12 chr13 25218737 25218910 -94525988 + L1MCa LINE L1 539 719 -6222 22 0 0 0 chr13 25218942 25218964 -94525934 + AT_rich Low_complexity Low_complexity 1 22 0 244 227 72 0 chr13 25220859 25220956 -94523942 - L1ME LINE L1 -284 5837 5734 272 315 30 39 chr13 25222078 25222310 -94522588 + L1MCa LINE L1 1238 1467 -4956 * 3373 221 88 80 chr13 25222294 25222697 -94522201 + L1MCa LINE L1 6 404 -5920 1903 109 44 4 chr13 25222697 25222972 -94521926 + AluSg1 SINE Alu 3 288 -21 3373 221 88 80 chr13 25222972 25223977 -94520921 + L1MCa LINE L1 404 1489 -4835 1339 201 23 0 chr13 25223977 25224241 -94520657 + AluSx SINE Alu 42 311 -1 1518 252 139 22 chr13 25224253 25225788 -94519110 + L1MCa LINE L1 1595 3330 -3096 2006 302 158 25 chr13 25225788 25227011 -94517887 + L2 LINE L2 1223 2608 -706 965 276 177 24 chr13 25227071 25227495 -94517403 + L2 LINE L2 2825 3313 0 267 216 11 0 chr13 25227570 25227658 -94517240 + L1ME4a LINE L1 6025 6113 -8 241 203 17 0 chr13 25227713 25227772 -94517126 + L1ME4a LINE L1 6060 6119 -2 373 191 45 0 chr13 25227882 25227971 -94516927 - L1MC4 LINE L1 0 8042 7950 2570 195 57 78 chr13 25228052 25228945 -94515953 - L1MC4 LINE L1 -410 7632 6759 549 225 28 0 chr13 25229106 25229248 -94515650 + PABL_A-int LTR ERV1 4801 4946 -1385 251 152 0 0 chr13 25229274 25229320 -94515578 + PABL_A-int LTR ERV1 3918 3963 -1052 29 0 0 0 chr13 25229657 25229686 -94515212 + AT_rich Low_complexity Low_complexity 1 29 0 726 203 213 102 chr13 25229989 25230491 -94514407 + LTR64 LTR ERVK 1 558 0 21 0 0 0 chr13 25231139 25231160 -94513738 + AT_rich Low_complexity Low_complexity 1 21 0 270 308 17 0 chr13 25231385 25231502 -94513396 - MER103 DNA DNA -45 121 3 2067 287 24 40 chr13 25231788 25232989 -94511909 - L2 LINE L2 -1 3312 2132 243 290 129 46 chr13 25233144 25233579 -94511319 - L2 LINE L2 -1147 2167 1697 339 136 45 0 chr13 25233607 25233673 -94511225 - L1MB3 LINE L1 -7 6176 6108 2041 166 60 5 chr13 25233677 25234075 -94510823 - MSTB1 LTR MaLR -12 420 1 3071 151 45 26 chr13 25234075 25234716 -94510182 - L1MB2 LINE L1 -70 6101 5449 4567 122 14 7 chr13 25235007 25235705 -94509193 + L1PA16 LINE L1 5455 6157 -9 418 294 238 14 chr13 25235803 25236231 -94508667 - L2 LINE L2 -535 2779 2256 266 326 59 38 chr13 25236736 25236880 -94508018 + MIR SINE MIR 23 165 -64 194 208 0 75 chr13 25237178 25237231 -94507667 + L2 LINE L2 3264 3312 -1 201 321 81 42 chr13 25239342 25239515 -94505383 + MIR SINE MIR 16 194 -68 1926 62 117 7 chr13 25239515 25239788 -94505110 + AluSc SINE Alu 1 303 -6 1036 76 0 0 chr13 25242104 25242236 -94502662 - AluSg/x SINE Alu -7 305 174 2265 104 0 17 chr13 25242412 25242711 -94502187 - AluSq SINE Alu -19 294 1 5225 53 20 3 chr13 25242745 25243404 -94501494 + L1PA7 LINE L1 5484 6153 -1 21 0 0 0 chr13 25245555 25245576 -94499322 + AT_rich Low_complexity Low_complexity 1 21 0 190 329 49 12 chr13 25246303 25246385 -94498513 - L2 LINE L2 -54 3218 3134 196 310 0 0 chr13 25246762 25246820 -94498078 - L2 LINE L2 -253 3060 3003 239 272 12 25 chr13 25247091 25247172 -94497726 - L1MC4 LINE L1 -149 7893 7814 326 0 0 0 chr13 25247193 25247228 -94497670 - U2 snRNA snRNA -153 35 1 252 308 104 50 chr13 25247595 25247777 -94497121 - L1MC/D LINE L1 -2082 5726 5535 234 172 62 16 chr13 25247830 25247894 -94497004 - L1MC/D LINE L1 -753 5393 5327 429 20 0 0 chr13 25248371 25248421 -94496477 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 75 0 0 chr13 25248422 25248475 -94496423 + AT_rich Low_complexity Low_complexity 1 53 0 210 37 0 0 chr13 25248544 25248571 -94496327 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr13 25251142 25251170 -94493728 + AT_rich Low_complexity Low_complexity 1 28 0 382 219 133 16 chr13 25251195 25251323 -94493575 - L1ME4a LINE L1 -17 6104 5962 23 0 0 0 chr13 25253900 25253923 -94490975 + AT_rich Low_complexity Low_complexity 1 23 0 314 306 0 0 chr13 25254970 25255055 -94489843 + MER103 DNA DNA 5 89 -77 2062 119 3 17 chr13 25256085 25256387 -94488511 + AluJb SINE Alu 1 298 -14 1586 222 76 58 chr13 25257202 25257770 -94487128 + L1MC4 LINE L1 7465 8042 0 1380 141 0 23 chr13 25257781 25258001 -94486897 + AluJo SINE Alu 85 299 -13 294 260 26 0 chr13 25258175 25258252 -94486646 + MER3 DNA MER1_type 5 83 -126 232 214 14 71 chr13 25258238 25258308 -94486590 - Charlie5 DNA MER1_type -2546 66 1 * 250 230 126 0 chr13 25262735 25262822 -94482076 + L2 LINE L2 3136 3233 -39 204 339 0 0 chr13 25262914 25262976 -94481922 + MIR SINE MIR 184 245 -17 202 275 112 34 chr13 25263170 25263348 -94481550 - L2 LINE L2 -252 3020 2829 192 250 67 0 chr13 25263558 25263618 -94481280 - MIR3 SINE MIR -28 180 117 1567 249 102 85 chr13 25263915 25264844 -94480054 - L1ME LINE L1 -5116 954 10 22 56 0 0 chr13 25264870 25264906 -94479992 + AT_rich Low_complexity Low_complexity 1 36 0 2361 100 7 0 chr13 25265099 25265408 -94479490 + AluSx SINE Alu 1 311 -1 1851 164 0 13 chr13 25266392 25266696 -94478202 + AluJo SINE Alu 1 300 -12 279 0 0 0 chr13 25266697 25266728 -94478170 + (CA)n Simple_repeat Simple_repeat 1 31 0 351 250 17 58 chr13 25267522 25267642 -94477256 + MER5A DNA MER1_type 63 177 -12 1281 97 97 5 chr13 25269482 25269668 -94475230 - AluJo SINE Alu -15 297 95 3633 130 57 0 chr13 25270864 25271439 -94473459 + MER39B LTR ERV1 1 608 -45 532 211 49 8 chr13 25271874 25271997 -94472901 + L1MC4a LINE L1 5523 5650 -471 624 244 185 33 chr13 25271997 25272432 -94472466 + MLT1G1 LTR MaLR 1 595 0 689 231 124 20 chr13 25272433 25272731 -94472167 + L1MC4a LINE L1 5641 5969 -1839 296 208 0 0 chr13 25273033 25273105 -94471793 - MLT2C2 LTR ERVL 0 464 393 1668 201 129 12 chr13 25273149 25273568 -94471330 - MLT2B1 LTR ERVL -50 470 3 485 253 100 3 chr13 25273570 25273717 -94471181 + MIR SINE MIR 15 176 -58 2240 83 14 7 chr13 25273785 25274075 -94470823 - AluSq SINE Alu -21 292 1 209 57 29 0 chr13 25274118 25274153 -94470745 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 542 288 84 14 chr13 25274154 25274584 -94470314 - L1M4 LINE L1 -2868 3278 2819 862 114 16 0 chr13 25274584 25274707 -94470191 - AluSg/x SINE Alu -12 298 174 33 25 0 0 chr13 25274958 25274998 -94469900 + AT_rich Low_complexity Low_complexity 1 40 0 899 281 69 59 chr13 25275247 25276412 -94468486 - L1MEc LINE L1 -2161 4054 2778 2103 125 3 0 chr13 25276552 25276841 -94468057 + AluSx SINE Alu 1 290 -22 636 211 19 115 chr13 25276933 25277046 -94467852 - MIR SINE MIR -13 249 172 2488 39 0 0 chr13 25277046 25277371 -94467527 + AluY SINE Alu 1 325 0 636 211 19 115 chr13 25277371 25277516 -94467382 - MIR SINE MIR -90 172 15 432 271 118 23 chr13 25277568 25277911 -94466987 - L1MEc LINE L1 -3764 2481 2117 23 0 0 0 chr13 25277918 25277941 -94466957 + AT_rich Low_complexity Low_complexity 1 23 0 2089 145 3 0 chr13 25278032 25278328 -94466570 + AluSx SINE Alu 1 297 -15 1229 190 50 75 chr13 25278479 25278863 -94466035 - MLT1A2 LTR MaLR 0 374 1 2184 122 7 0 chr13 25279104 25279400 -94465498 - AluSx SINE Alu -14 298 1 400 246 116 25 chr13 25279557 25279746 -94465152 - LTR50 LTR ERVL -5 790 584 1946 159 31 0 chr13 25279746 25280087 -94464811 + MER6 DNA MER2_type -10 795 -70 294 233 0 0 chr13 25280286 25280372 -94464526 + (TG)n Simple_repeat Simple_repeat 1 86 0 215 270 203 7 chr13 25280481 25280629 -94464269 + MIR SINE MIR 17 193 -69 1550 82 32 9 chr13 25281562 25281781 -94463117 + L1PB1 LINE L1 5927 6150 -1 327 317 10 0 chr13 25282822 25282923 -94461975 + MER5B DNA MER1_type 70 171 -7 718 201 12 6 chr13 25283004 25283168 -94461730 - MER5A DNA MER1_type -2 187 23 1339 181 47 56 chr13 25283569 25283929 -94460969 - L1MB3 LINE L1 -1 6182 5826 447 283 91 24 chr13 25283936 25284133 -94460765 + MIR SINE MIR 5 212 -50 2159 126 3 7 chr13 25284627 25284936 -94459962 + AluSx SINE Alu 1 308 -4 639 227 29 29 chr13 25285032 25285204 -94459694 + MER5B DNA MER1_type 3 174 -4 1861 251 8 23 chr13 25285251 25285774 -94459124 - L1M4 LINE L1 -1678 4468 3954 355 212 75 137 chr13 25286694 25286935 -94457963 - MLT1K LTR MaLR -2 586 361 1363 205 47 26 chr13 25287315 25287656 -94457242 + MER7A DNA MER2_type 1 346 0 324 0 0 0 chr13 25288421 25288457 -94456441 + (CA)n Simple_repeat Simple_repeat 2 37 0 2427 80 0 16 chr13 25288629 25288940 -94455958 - AluSp SINE Alu -7 306 1 218 291 0 0 chr13 25290382 25290437 -94454461 + MIR SINE MIR 95 149 -113 300 116 23 0 chr13 25290896 25290939 -94453959 + MER41C LTR ERV1 23 66 -488 243 111 28 0 chr13 25290935 25290971 -94453927 + MER41C LTR ERV1 25 61 -493 * 3149 131 82 0 chr13 25290971 25291461 -94453437 + MER41C LTR ERV1 25 554 0 221 258 31 82 chr13 25291487 25291584 -94453314 + MIR SINE MIR 92 183 -79 248 278 67 0 chr13 25291684 25291774 -94453124 - MER117 DNA MER1_type -37 160 65 2294 92 3 0 chr13 25292490 25292795 -94452103 - AluSp SINE Alu -4 309 4 7032 93 17 14 chr13 25293257 25294276 -94450622 + HERVH LTR ERV1 1966 2987 -4726 752 167 20 13 chr13 25294270 25294420 -94450478 + HERVH LTR ERV1 3140 3290 -4423 * 3334 122 6 2 chr13 25294410 25294910 -94449988 + HERVH LTR ERV1 3492 3993 -3720 4452 141 1 1 chr13 25294912 25295574 -94449324 + HERVH LTR ERV1 4488 5149 -2564 969 121 0 0 chr13 25295575 25295724 -94449174 + HERVH LTR ERV1 5600 5748 -1965 1850 74 8 0 chr13 25295755 25296013 -94448885 + HERVH LTR ERV1 7429 7688 -25 1603 143 32 11 chr13 25296022 25296043 -94448855 + L1PA15 LINE L1 5880 5899 -266 3474 62 2 9 chr13 25296043 25296494 -94448404 + LTR7 LTR ERV1 1 448 -2 1603 143 32 11 chr13 25296494 25296752 -94448146 + L1PA15 LINE L1 5899 6165 0 1069 138 13 154 chr13 25297281 25297579 -94447319 - LTR8 LTR ERV1 0 691 436 8414 95 20 18 chr13 25297679 25298930 -94445968 - HERVH LTR ERV1 -6459 1254 1 3491 62 5 7 chr13 25298932 25299381 -94445517 - LTR7 LTR ERV1 -2 448 1 2495 141 10 5 chr13 25299381 25299770 -94445128 - L1PA15 LINE L1 -260 5905 5515 321 96 19 0 chr13 25299767 25299819 -94445079 + L1PA15 LINE L1 5474 5526 -642 * 720 287 116 10 chr13 25300072 25300522 -94444376 + MLT1G LTR MaLR 13 549 -41 622 349 7 0 chr13 25300763 25301032 -94443866 - L1ME LINE L1 -356 5765 5495 1877 114 36 23 chr13 25301437 25301743 -94443155 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr13 25301864 25301885 -94443013 + AT_rich Low_complexity Low_complexity 1 21 0 342 343 30 18 chr13 25303528 25303697 -94441201 - MIR SINE MIR -6 256 86 266 174 0 0 chr13 25306057 25306103 -94438795 - MLT2C2 LTR ERVL 0 554 509 249 65 0 0 chr13 25306123 25306154 -94438744 + MLT2C2 LTR ERVL 434 464 0 183 184 0 0 chr13 25306162 25306200 -94438698 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 2044 196 43 5 chr13 25306205 25306603 -94438295 - MLT2C2 LTR ERVL -48 416 4 414 349 9 5 chr13 25306972 25307187 -94437711 - L1ME2 LINE L1 -107 6126 5911 1387 256 45 8 chr13 25307259 25307778 -94437120 - L1ME2 LINE L1 -457 5776 5239 904 188 4 2 chr13 25307781 25308027 -94436871 - AluJb SINE Alu -17 295 2 603 238 72 18 chr13 25308033 25308256 -94436642 - L1ME2 LINE L1 -983 5232 4998 1934 170 89 25 chr13 25308308 25308713 -94436185 - Tigger2a DNA MER2_type -3 431 1 358 284 5 59 chr13 25309104 25309217 -94435681 - L1ME2 LINE L1 -4576 1820 1721 1918 154 0 6 chr13 25309217 25309529 -94435369 - AluSx SINE Alu -2 310 1 358 284 5 59 chr13 25309529 25309619 -94435279 - L1ME2 LINE L1 -4675 1721 1628 * 1583 192 60 6 chr13 25309615 25309964 -94434934 - L1MD1 LINE L1 0 6242 5875 539 242 80 105 chr13 25309953 25310391 -94434507 - L1ME2 LINE L1 -4756 1640 1214 * 1711 231 62 9 chr13 25312373 25312810 -94432088 + MLT1C LTR MaLR 8 467 0 1344 235 87 20 chr13 25313359 25313797 -94431101 - MLT1C LTR MaLR 0 467 1 698 208 127 34 chr13 25315548 25315935 -94428963 - MER31B LTR ERV1 0 543 1 276 264 104 32 chr13 25316039 25316164 -94428734 - MIR SINE MIR -71 191 58 293 230 127 56 chr13 25316701 25316827 -94428071 + MIR3 SINE MIR 23 157 -51 3345 288 171 29 chr13 25317460 25319416 -94425482 - L2 LINE L2 -1 3312 1060 316 266 36 27 chr13 25319441 25319552 -94425346 - MIR SINE MIR -93 115 16 1638 163 3 26 chr13 25319575 25319881 -94425017 + AluJo SINE Alu 1 299 -13 22 0 0 0 chr13 25320015 25320037 -94424861 + AT_rich Low_complexity Low_complexity 1 22 0 5573 116 19 26 chr13 25320180 25320889 -94424009 + L1PA13 LINE L1 4757 5467 -711 2249 87 3 6 chr13 25320889 25321201 -94423697 + AluY SINE Alu 1 311 0 5573 116 19 26 chr13 25321201 25321908 -94422990 + L1PA13 LINE L1 5467 6178 0 319 248 34 43 chr13 25321910 25322027 -94422871 - L1MEd LINE L1 -4919 1210 1095 243 231 81 46 chr13 25322152 25322325 -94422573 - L1MDa LINE L1 -4954 1469 1291 2536 119 14 5 chr13 25322726 25323097 -94421801 - THE1C LTR MaLR -1 374 1 10499 114 30 15 chr13 25323097 25324655 -94420243 - THE1C-int LTR MaLR 0 1580 1 2505 116 16 8 chr13 25324655 25325027 -94419871 - THE1C LTR MaLR 0 375 1 575 103 0 0 chr13 25325430 25325508 -94419390 + AluS SINE Alu 2 79 -233 274 268 78 13 chr13 25325609 25325762 -94419136 - L1MCa LINE L1 -5410 1016 854 393 121 0 30 chr13 25326760 25326826 -94418072 - MLT2A2 LTR ERVL 0 453 390 217 113 0 48 chr13 25326826 25326888 -94418010 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 2035 190 55 65 chr13 25326888 25327393 -94417505 - MLT2B3 LTR ERVL -54 500 1 661 276 63 82 chr13 25327979 25328634 -94416264 - L1MEd LINE L1 -5021 1098 457 2018 102 0 4 chr13 25329034 25329309 -94415589 + AluSg SINE Alu 18 291 -19 184 329 73 12 chr13 25330627 25330709 -94414189 + MIR SINE MIR 97 183 -79 2105 106 13 3 chr13 25331076 25331378 -94413520 - AluSx SINE Alu -7 305 1 287 189 0 124 chr13 25335015 25335200 -94409698 + G-rich Low_complexity Low_complexity 3 164 0 302 229 57 0 chr13 25336005 25336075 -94408823 - MER5A DNA MER1_type -71 118 45 901 174 25 0 chr13 25336865 25337101 -94407797 + CT-rich Low_complexity Low_complexity 1 241 0 243 334 175 25 chr13 25338389 25338835 -94406063 + L2 LINE L2 2174 2686 -628 260 293 81 32 chr13 25339080 25339203 -94405695 + L2 LINE L2 2961 3089 -224 21 0 0 0 chr13 25339753 25339774 -94405124 + AT_rich Low_complexity Low_complexity 1 21 0 1141 176 40 22 chr13 25341451 25341678 -94403220 + MER46A DNA MER2_type 2 232 -4 23 0 0 0 chr13 25341901 25341924 -94402974 + AT_rich Low_complexity Low_complexity 1 23 0 304 312 78 7 chr13 25341943 25342097 -94402801 + MIR SINE MIR 20 184 -78 181 269 13 51 chr13 25342812 25342890 -94402008 - MIR SINE MIR -144 118 44 1292 123 33 5 chr13 25343665 25343876 -94401022 + MSTB1 LTR MaLR 179 395 -37 1315 130 10 91 chr13 25344022 25344066 -94400832 - L1MB4 LINE L1 -1 6179 6133 2173 95 3 7 chr13 25344066 25344360 -94400538 - AluSg SINE Alu -17 293 1 1315 130 10 91 chr13 25344360 25344509 -94400389 - L1MB4 LINE L1 -47 6133 6018 1571 126 0 0 chr13 25344509 25344740 -94400158 + AluSq SINE Alu 73 303 -10 1315 130 10 91 chr13 25344740 25344852 -94400046 - L1MB4 LINE L1 -162 6018 5898 303 275 20 10 chr13 25345033 25345181 -94399717 - L1MB4 LINE L1 -423 5698 5621 31 0 0 0 chr13 25345283 25345314 -94399584 + AT_rich Low_complexity Low_complexity 1 31 0 215 374 43 0 chr13 25346238 25346353 -94398545 - MIR SINE MIR -69 139 20 1618 171 37 3 chr13 25346589 25346887 -94398011 - AluJo SINE Alu -4 308 1 2235 116 0 0 chr13 25346888 25347198 -94397700 - AluSx SINE Alu -2 310 1 1227 192 108 16 chr13 25347426 25347497 -94397401 - LTR52 LTR ERVL -2 419 356 347 60 20 0 chr13 25347497 25347547 -94397351 + (CA)n Simple_repeat Simple_repeat 1 51 0 1227 192 108 16 chr13 25347547 25347856 -94397042 - LTR52 LTR ERVL -65 356 4 2119 283 46 35 chr13 25349277 25350462 -94394436 + L1M4 LINE L1 2218 3416 -2730 236 385 7 21 chr13 25351744 25351887 -94393011 + MIR SINE MIR 10 150 -112 5269 166 73 41 chr13 25352040 25352374 -94392524 - L1MC2 LINE L1 0 6344 6022 9372 23 7 199 chr13 25352374 25354082 -94390816 + SVA Other Other 1 1380 -6 5269 166 73 41 chr13 25354082 25354881 -94390017 - L1MC2 LINE L1 -322 6022 5141 1820 161 0 0 chr13 25354881 25355193 -94389705 - AluSx SINE Alu 0 312 1 5269 166 73 41 chr13 25355193 25355527 -94389371 - L1MC2 LINE L1 -1203 5141 4819 965 264 75 20 chr13 25355729 25356024 -94388874 - L1ME3A LINE L1 0 6170 5860 1398 87 101 5 chr13 25356049 25356256 -94388642 + MER30 DNA MER1_type 4 230 0 602 199 20 139 chr13 25356270 25356471 -94388427 - MER58C DNA MER1_type -1 214 38 1158 242 139 21 chr13 25356491 25356967 -94387931 - L1ME3A LINE L1 -367 5803 5272 231 167 24 0 chr13 25357029 25357071 -94387827 - LTR67 LTR ERVL -9 548 506 1293 246 91 48 chr13 25357096 25357536 -94387362 - MLT2B1 LTR ERVL -61 459 1 252 225 45 22 chr13 25357579 25357668 -94387230 - LTR67 LTR ERVL -107 450 360 701 264 146 21 chr13 25358313 25358593 -94386305 - MLT1J LTR MaLR -175 336 22 25 23 0 23 chr13 25358620 25358644 -94386254 + AT_rich Low_complexity Low_complexity 1 25 -17 2168 101 3 0 chr13 25358644 25358942 -94385956 - AluSp SINE Alu -14 299 1 25 23 0 23 chr13 25358942 25358960 -94385938 + AT_rich Low_complexity Low_complexity 25 42 0 3418 163 3 24 chr13 25359714 25360328 -94384570 - L1PB4 LINE L1 -2 6154 5554 2321 148 50 36 chr13 25360333 25360916 -94383982 - L1PB4 LINE L1 -678 5478 4882 1517 173 21 7 chr13 25361261 25361545 -94383353 - AluJo SINE Alu -24 288 1 1775 142 0 4 chr13 25361999 25362266 -94382632 - AluSx SINE Alu -46 266 1 278 320 61 44 chr13 25362473 25362503 -94382395 - L1MC/D LINE L1 -304 5817 5789 3213 162 18 11 chr13 25362503 25363058 -94381840 + MER89 LTR ERV1 1 559 0 278 320 61 44 chr13 25363058 25363313 -94381585 - L1MC/D LINE L1 -332 5789 5618 326 245 21 64 chr13 25363478 25363572 -94381326 - LTR16A LTR ERVL -201 249 160 288 290 40 40 chr13 25363702 25363802 -94381096 - L2 LINE L2 -94 3178 3079 239 213 225 12 chr13 25364027 25364107 -94380791 - MIR SINE MIR -33 229 133 222 280 0 0 chr13 25364330 25364380 -94380518 - L2 LINE L2 -1384 1930 1881 2227 116 51 23 chr13 25366703 25367057 -94377841 + THE1B LTR MaLR 1 364 0 11825 97 5 1 chr13 25367057 25368631 -94376267 + THE1B-int LTR MaLR 1 1580 0 2044 118 91 21 chr13 25368631 25368971 -94375927 + THE1B LTR MaLR 1 364 0 281 322 0 11 chr13 25368976 25369066 -94375832 - L2 LINE L2 -3 3269 3181 * 316 264 118 0 chr13 25369065 25369175 -94375723 + MIR SINE MIR 90 212 -50 226 357 56 30 chr13 25369172 25369388 -94375510 - L3b LINE CR1 -206 1377 1151 * 2026 124 0 20 chr13 25369388 25369687 -94375211 - AluSq SINE Alu -20 293 1 226 357 56 30 chr13 25369687 25369739 -94375159 - L3b LINE CR1 -432 1151 1102 244 293 38 19 chr13 25370126 25370232 -94374666 + L1ME4a LINE L1 5681 5788 -2020 339 274 111 0 chr13 25370462 25370579 -94374319 + L1ME4a LINE L1 5977 6106 -15 202 259 185 44 chr13 25370642 25370777 -94374121 + MIR3 SINE MIR 19 172 -36 322 309 26 14 chr13 25370894 25371022 -94373876 - MIR SINE MIR -66 142 17 1703 146 48 0 chr13 25373584 25373884 -94371014 + AluSg SINE Alu 1 313 0 605 226 0 0 chr13 25375016 25375140 -94369758 - MER3 DNA MER1_type -5 204 81 21 0 0 0 chr13 25375146 25375167 -94369731 + AT_rich Low_complexity Low_complexity 1 21 0 2417 51 0 0 chr13 25375978 25376273 -94368625 - AluY SINE Alu -16 295 1 686 266 43 18 chr13 25376504 25376722 -94368176 + MIR SINE MIR 33 249 -13 1124 164 65 11 chr13 25376780 25377042 -94367856 - L1MA4 LINE L1 0 6300 6025 227 278 35 52 chr13 25377473 25377588 -94367310 + MIR SINE MIR 128 240 -22 1128 132 11 0 chr13 25377678 25377852 -94367046 + AluSg/x SINE Alu 137 312 0 180 326 141 0 chr13 25377943 25378078 -94366820 + MIR3 SINE MIR 30 183 -25 27 0 0 0 chr13 25378180 25378207 -94366691 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr13 25378621 25378658 -94366240 + GC_rich Low_complexity Low_complexity 1 37 0 512 279 36 0 chr13 25378797 25378937 -94365961 + MIR SINE MIR 69 213 -49 625 316 56 5 chr13 25379071 25379286 -94365612 - MIR SINE MIR -30 232 7 1593 174 36 0 chr13 25379301 25379576 -94365322 + AluJo SINE Alu 4 288 -24 1019 172 0 0 chr13 25380361 25380530 -94364368 - AluJo SINE Alu -133 179 11 2169 113 0 28 chr13 25380763 25381082 -94363816 + AluSx SINE Alu 1 310 -2 561 262 71 6 chr13 25382194 25382377 -94362521 + MIR SINE MIR 13 207 -55 3599 241 117 20 chr13 25383168 25383812 -94361086 + Zaphod DNA AcHobo 9 590 -3441 2092 106 3 7 chr13 25383812 25384113 -94360785 + AluSx SINE Alu 1 300 -12 3599 241 117 20 chr13 25384113 25384694 -94360204 + Zaphod DNA AcHobo 590 1352 -2679 1469 167 7 25 chr13 25385065 25385341 -94359557 - AluJb SINE Alu -14 298 28 2480 108 5 42 chr13 25386304 25386381 -94358517 - THE1B LTR MaLR 0 364 286 1801 123 3 69 chr13 25386381 25386720 -94358178 + AluSx SINE Alu 1 312 0 2480 108 5 42 chr13 25386720 25387020 -94357878 - THE1B LTR MaLR -78 286 1 258 115 19 0 chr13 25387582 25387634 -94357264 + L1MB2 LINE L1 5864 5916 -255 2308 187 6 39 chr13 25387832 25388414 -94356484 + L1M3 LINE L1 4930 5486 -694 2123 100 0 0 chr13 25388414 25388718 -94356180 + AluSc SINE Alu 1 304 0 2308 187 6 39 chr13 25388718 25388841 -94356057 + L1M3 LINE L1 5486 5612 -568 2295 90 3 0 chr13 25388841 25389152 -94355746 + AluSx SINE Alu 1 312 0 23 0 0 0 chr13 25390356 25390379 -94354519 + AT_rich Low_complexity Low_complexity 1 23 0 482 279 70 6 chr13 25390407 25390565 -94354333 + MIR SINE MIR 81 248 -14 367 279 66 0 chr13 25390641 25390763 -94354135 + L2 LINE L2 2418 2547 -767 3735 126 11 42 chr13 25390764 25391400 -94353498 + L1MC1 LINE L1 5718 6333 0 778 278 158 41 chr13 25391488 25392116 -94352782 + L2 LINE L2 2530 3305 -8 2025 161 13 40 chr13 25392423 25392801 -94352097 + MLT1B LTR MaLR 1 368 -22 531 197 197 0 chr13 25393010 25393137 -94351761 + LTR16C LTR ERVL 98 249 -242 807 189 25 51 chr13 25393371 25393408 -94351490 + LTR16C LTR ERVL 299 335 -156 1407 214 57 52 chr13 25393408 25393796 -94351102 - MLT1B LTR MaLR 0 390 1 807 189 25 51 chr13 25393796 25393954 -94350944 + LTR16C LTR ERVL 335 489 -2 238 220 99 22 chr13 25393954 25394035 -94350863 - MER103 DNA DNA -21 145 58 1520 83 0 0 chr13 25394035 25394228 -94350670 - AluSg/x SINE Alu -9 303 111 299 342 57 19 chr13 25395007 25395165 -94349733 + MIR SINE MIR 87 250 -12 261 252 135 54 chr13 25395238 25395349 -94349549 + MIR SINE MIR 21 140 -68 263 172 183 97 chr13 25395688 25395874 -94349024 - MER112 DNA MER1_type -4 256 55 877 107 28 202 chr13 25395903 25395965 -94348933 + MER7A DNA MER2_type 1 72 -2966 2160 103 0 0 chr13 25395965 25396255 -94348643 + AluSq SINE Alu 7 296 -17 877 107 28 202 chr13 25396255 25396445 -94348453 + MER7A DNA MER2_type 72 207 -139 * 1143 193 16 0 chr13 25396444 25396636 -94348262 + MSTD LTR MaLR 202 396 0 2003 151 40 81 chr13 25396828 25396881 -94348017 - MSTA LTR MaLR 0 428 374 3069 65 0 0 chr13 25396881 25397265 -94347633 - L1PA7 LINE L1 -5 6149 5766 2003 151 40 81 chr13 25397265 25397655 -94347243 - MSTA LTR MaLR -54 374 3 319 303 15 53 chr13 25397742 25397874 -94347024 + MER5B DNA MER1_type 51 177 -1 1957 139 35 30 chr13 25398475 25398843 -94346055 - L1MB3 LINE L1 0 6183 5814 289 190 35 0 chr13 25398885 25398943 -94345955 - L1MB2 LINE L1 -2 6169 6110 2643 137 17 2 chr13 25399032 25399454 -94345444 - L1MB3 LINE L1 -77 6106 5679 1827 143 18 0 chr13 25400008 25400288 -94344610 + AluSx SINE Alu 11 295 -17 994 248 98 10 chr13 25400433 25400739 -94344159 + MER46C DNA MER2_type 6 338 0 219 125 0 0 chr13 25401253 25401293 -94343605 + (TG)n Simple_repeat Simple_repeat 2 41 0 1333 264 71 68 chr13 25402492 25403213 -94341685 - L1MEd LINE L1 -4864 1255 533 238 285 102 36 chr13 25404780 25404917 -94339981 - L2 LINE L2 -46 3267 3122 3703 127 114 28 chr13 25405692 25406414 -94338484 - LTR1 LTR ERV1 0 785 2 480 238 79 37 chr13 25406515 25406679 -94338219 - MER91A DNA MER1_type -25 171 1 228 347 42 11 chr13 25408734 25408829 -94336069 + L2 LINE L2 3214 3311 -2 527 300 82 67 chr13 25409503 25409833 -94335065 + L2 LINE L2 2926 3260 -12 1955 123 0 20 chr13 25410023 25410323 -94334575 - AluSx SINE Alu 0 312 19 1921 102 0 0 chr13 25410543 25410799 -94334099 + AluSg SINE Alu 1 256 -54 325 122 0 0 chr13 25410899 25410948 -94333950 + AluSg SINE Alu 246 294 -6 2345 118 49 3 chr13 25412060 25412408 -94332490 + THE1B LTR MaLR 1 364 0 192 313 47 0 chr13 25412650 25412714 -94332184 + MIR SINE MIR 156 222 -40 187 261 144 65 chr13 25412789 25412942 -94331956 + L2 LINE L2 2918 3082 -190 2311 61 3 3 chr13 25413054 25413347 -94331551 - AluY SINE Alu -5 306 14 1395 216 77 70 chr13 25413385 25413907 -94330991 + MER39 LTR ERV1 1 707 0 304 339 24 24 chr13 25413909 25413954 -94330944 - MIR3 SINE MIR -45 163 119 1431 172 62 44 chr13 25413954 25414192 -94330706 + MER2 DNA MER2_type 1 248 -96 2037 114 10 3 chr13 25414192 25414491 -94330407 - AluSq SINE Alu -12 301 1 1431 172 62 44 chr13 25414491 25414590 -94330308 + MER2 DNA MER2_type 248 344 0 304 339 24 24 chr13 25414590 25414668 -94330230 - MIR3 SINE MIR -88 120 40 2199 115 0 0 chr13 25414898 25415203 -94329695 + AluSc SINE Alu 1 305 -4 210 256 23 0 chr13 25415283 25415326 -94329572 - L2 LINE L2 -17 3255 3212 683 244 105 60 chr13 25415633 25416149 -94328749 + MER34C LTR ERV1 47 585 0 405 0 0 0 chr13 25416321 25416366 -94328532 + (TG)n Simple_repeat Simple_repeat 1 45 0 1702 177 0 19 chr13 25416982 25417299 -94327599 + AluJo SINE Alu 2 312 0 786 260 100 74 chr13 25417979 25418479 -94326419 - LTR33 LTR ERVL -8 513 1 216 0 0 0 chr13 25418759 25418783 -94326115 + (CA)n Simple_repeat Simple_repeat 1 24 0 2019 123 7 0 chr13 25419508 25419801 -94325097 + AluSx SINE Alu 1 295 -17 426 212 142 9 chr13 25419895 25420008 -94324890 + MIR SINE MIR 95 222 -40 428 240 48 24 chr13 25420056 25420181 -94324717 - MLT1J2 LTR MaLR -56 394 267 315 233 283 0 chr13 25420871 25420991 -94323907 - MIR SINE MIR -16 246 93 420 188 228 7 chr13 25422544 25422693 -94322205 - MER20B DNA MER1_type -596 187 6 4040 274 75 35 chr13 25423914 25424676 -94320222 + L1MEc LINE L1 46 776 -5620 2136 106 3 0 chr13 25424676 25424968 -94319930 - AluSp SINE Alu -20 293 1 4040 274 75 35 chr13 25424968 25425939 -94318959 + L1MEc LINE L1 776 1849 -4547 203 177 32 16 chr13 25425939 25426001 -94318897 + T-rich Low_complexity Low_complexity 1 63 0 5907 45 11 8 chr13 25426038 25426773 -94318125 - SVA Other Other 0 1386 650 1181 197 18 18 chr13 25426791 25427065 -94317833 + L1MEc LINE L1 1836 2109 -4287 3113 135 32 50 chr13 25427326 25427961 -94316937 + MER4B LTR ERV1 2 779 0 325 309 80 37 chr13 25428150 25428183 -94316715 + L2 LINE L2 2896 2926 -346 1902 140 14 0 chr13 25428183 25428476 -94316422 - AluSx SINE Alu -13 299 3 325 309 80 37 chr13 25428476 25428630 -94316268 + L2 LINE L2 2926 3091 -181 999 168 37 47 chr13 25428706 25428896 -94316002 - MER5A DNA MER1_type 0 189 2 3640 201 99 8 chr13 25428946 25429067 -94315831 - MER21B LTR ERV1 -1 862 753 222 91 0 0 chr13 25429067 25429100 -94315798 + (CAATT)n Simple_repeat Simple_repeat 4 36 0 3640 201 99 8 chr13 25429100 25429755 -94315143 - MER21B LTR ERV1 -110 753 15 282 29 0 0 chr13 25429757 25429792 -94315106 + (CA)n Simple_repeat Simple_repeat 2 36 0 213 190 17 17 chr13 25429792 25429850 -94315048 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 336 253 12 24 chr13 25429869 25429952 -94314946 + L2 LINE L2 3232 3313 0 2735 135 108 62 chr13 25430494 25431078 -94313820 + LTR36 LTR ERV1 1 611 0 253 241 47 39 chr13 25432715 25432827 -94312071 + LTR50 LTR ERVL 436 791 -4 1480 194 3 25 chr13 25433278 25433592 -94311306 - AluJo SINE Alu -2 310 4 1363 114 0 0 chr13 25434681 25434874 -94310024 - AluSp SINE Alu -4 309 117 862 127 0 0 chr13 25434875 25435001 -94309897 + AluSq/x SINE Alu 2 127 -185 388 280 104 33 chr13 25435001 25435183 -94309715 - MIR SINE MIR -3 259 65 1611 210 113 12 chr13 25436767 25437191 -94307707 - MLT1C LTR MaLR 0 467 1 252 267 40 13 chr13 25437483 25437558 -94307340 - L2 LINE L2 -42 3230 3154 403 285 135 25 chr13 25438013 25438213 -94306685 + MIR SINE MIR 20 241 -21 256 320 122 15 chr13 25438445 25438642 -94306256 + L2 LINE L2 2521 2738 -576 1709 146 19 0 chr13 25438775 25439042 -94305856 + AluJb SINE Alu 1 272 -40 464 32 16 0 chr13 25439048 25439110 -94305788 + (TC)n Simple_repeat Simple_repeat 2 64 0 346 231 0 0 chr13 25439120 25439185 -94305713 - L1MC4 LINE L1 -1339 6703 6639 1822 188 29 6 chr13 25440036 25440375 -94304523 + MLT1A1 LTR MaLR 3 349 -16 1734 181 24 86 chr13 25440375 25440784 -94304114 - MSTD LTR MaLR 0 396 13 248 161 34 186 chr13 25441542 25441606 -94303292 + MER94 DNA DNA 1 41 -93 2820 13 0 0 chr13 25441606 25441924 -94302974 - AluYb8 SINE Alu 0 318 1 248 161 34 186 chr13 25441924 25441977 -94302921 + MER94 DNA DNA 41 100 -34 252 192 164 14 chr13 25442107 25442180 -94302718 - MIR3 SINE MIR -7 201 118 22 35 0 0 chr13 25442233 25442262 -94302636 + AT_rich Low_complexity Low_complexity 1 29 0 2043 114 3 0 chr13 25442262 25442551 -94302347 - AluSp SINE Alu -23 290 1 2079 158 0 0 chr13 25443152 25443462 -94301436 + AluJb SINE Alu 1 310 -2 507 299 121 18 chr13 25443489 25443713 -94301185 + MIR SINE MIR 16 262 0 933 272 50 53 chr13 25444844 25445324 -94299574 - MLT1H LTR MaLR 0 549 1 213 321 220 0 chr13 25445958 25446067 -94298831 + MIR SINE MIR 17 149 -113 1991 146 125 31 chr13 25446842 25447233 -94297665 - MSTA LTR MaLR 0 428 1 46 83 0 0 chr13 25448326 25448435 -94296463 + AT_rich Low_complexity Low_complexity 1 109 0 1819 154 6 35 chr13 25448814 25449125 -94295773 + AluJo SINE Alu 2 303 -9 205 329 0 13 chr13 25449273 25449349 -94295549 + L2 LINE L2 3197 3271 -1 2561 180 75 58 chr13 25451777 25452361 -94292537 - MER7C DNA MER2_type -1 601 8 583 245 65 113 chr13 25452390 25452823 -94292075 + L1ME LINE L1 6 417 -5653 1725 253 99 32 chr13 25452841 25453789 -94291109 + L1ME LINE L1 498 1481 -4599 308 133 0 0 chr13 25453789 25453834 -94291064 + Alu SINE Alu 1 45 -263 431 246 7 51 chr13 25456401 25456539 -94288359 + MIR SINE MIR 81 212 -50 2191 125 6 10 chr13 25456654 25456967 -94287931 + AluSx SINE Alu 1 312 0 504 309 46 60 chr13 25456969 25457168 -94287730 + L1ME LINE L1 1509 1709 -4552 2276 92 0 0 chr13 25457168 25457499 -94287399 + AluY SINE Alu 1 331 0 504 309 46 60 chr13 25457499 25457712 -94287186 + L1ME LINE L1 1709 1916 -4345 * 1332 129 45 140 chr13 25457710 25457797 -94287101 - L1MB3 LINE L1 0 6183 6089 207 0 0 0 chr13 25457797 25457820 -94287078 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1643 181 15 8 chr13 25457820 25458086 -94286812 - AluJo SINE Alu -30 282 15 1332 129 45 140 chr13 25458086 25458320 -94286578 - L1MB3 LINE L1 -93 6090 5896 2385 95 0 0 chr13 25458320 25458616 -94286282 - AluY SINE Alu -15 296 1 1332 129 45 140 chr13 25458616 25458649 -94286249 - L1MB3 LINE L1 -287 5896 5861 * 5489 169 29 38 chr13 25458641 25460078 -94284820 - L1M4 LINE L1 -3748 2634 23 2034 253 70 27 chr13 25460100 25460643 -94284255 + L1ME LINE L1 1949 2554 -3526 2405 72 0 3 chr13 25460643 25460949 -94283949 - AluY SINE Alu -6 305 1 2034 253 70 27 chr13 25460949 25461241 -94283657 + L1ME LINE L1 2554 2832 -3248 209 194 0 0 chr13 25461807 25461843 -94283055 + T-rich Low_complexity Low_complexity 4 39 0 719 208 118 65 chr13 25462358 25462637 -94282261 + MLT1D LTR MaLR 133 426 -79 3100 145 45 0 chr13 25462653 25463184 -94281714 - L1MC2 LINE L1 -169 6175 5621 341 136 0 0 chr13 25463184 25463243 -94281655 + MLT1D LTR MaLR 439 497 -8 516 250 48 27 chr13 25463358 25463546 -94281352 - MIR SINE MIR -4 258 67 238 110 24 37 chr13 25464535 25464617 -94280281 + (CCCG)n Simple_repeat Simple_repeat 4 84 0 307 190 52 69 chr13 25465872 25465988 -94278910 - MER5A DNA MER1_type -72 117 4 459 287 117 74 chr13 25466760 25467178 -94277720 - MLT1K LTR MaLR -2 586 151 1730 257 18 14 chr13 25467941 25468315 -94276583 - L1ME3 LINE L1 0 6162 5784 1751 178 83 3 chr13 25468315 25468653 -94276245 - MLT1A1 LTR MaLR 0 365 1 1730 257 18 14 chr13 25468653 25468768 -94276130 - L1ME3 LINE L1 -378 5784 5671 24 0 0 0 chr13 25469201 25469225 -94275673 + AT_rich Low_complexity Low_complexity 1 24 0 202 231 0 0 chr13 25470211 25470250 -94274648 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 2203 103 7 0 chr13 25470465 25470755 -94274143 - AluSx SINE Alu -20 292 1 269 253 32 53 chr13 25470893 25470988 -94273910 + MIR SINE MIR 48 140 -122 22 0 0 0 chr13 25472165 25472187 -94272711 + AT_rich Low_complexity Low_complexity 1 22 0 231 296 0 0 chr13 25474554 25474625 -94270273 + T-rich Low_complexity Low_complexity 1 71 0 180 0 0 0 chr13 25474905 25474925 -94269973 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 320 131 0 16 chr13 25474935 25474996 -94269902 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 4855 99 22 12 chr13 25475006 25475690 -94269208 + LTR8 LTR ERV1 1 691 0 3630 120 62 9 chr13 25476000 25476577 -94268321 + MER4B LTR ERV1 1 608 -2 611 214 0 15 chr13 25476582 25476713 -94268185 - MIR SINE MIR -102 160 32 23 33 0 0 chr13 25476863 25476893 -94268005 + AT_rich Low_complexity Low_complexity 1 30 0 3655 150 54 42 chr13 25476953 25477671 -94267227 + LTR8A LTR ERV1 1 727 0 310 328 79 18 chr13 25477683 25477912 -94266986 - L1ME LINE L1 -335 5786 5544 2465 80 7 0 chr13 25478395 25478695 -94266203 - AluY SINE Alu -9 302 1 225 0 0 0 chr13 25478760 25478785 -94266113 + (T)n Simple_repeat Simple_repeat 1 25 0 811 131 33 26 chr13 25478785 25478938 -94265960 + L1MA9 LINE L1 6157 6310 -2 403 242 28 95 chr13 25478952 25479414 -94265484 - L1ME4a LINE L1 -3 6118 5689 220 304 27 18 chr13 25481542 25481654 -94263244 - MIR SINE MIR -130 132 20 731 263 34 17 chr13 25482278 25482514 -94262384 + MIR SINE MIR 20 259 -3 2263 246 97 132 chr13 25482770 25483419 -94261479 - L2 LINE L2 0 3313 2643 1534 182 69 54 chr13 25483419 25483809 -94261089 - MSTD LTR MaLR 0 396 1 2263 246 97 132 chr13 25483809 25484132 -94260766 - L2 LINE L2 -670 2643 2310 1887 206 52 48 chr13 25484132 25484633 -94260265 + MLT1D LTR MaLR 1 503 -2 2263 246 97 132 chr13 25484633 25485738 -94259160 - L2 LINE L2 -1003 2310 1290 5975 55 16 4 chr13 25486356 25487113 -94257785 + MER4E LTR ERV1 1 766 0 282 276 28 55 chr13 25487113 25487247 -94257651 - MER5A DNA MER1_type -37 152 21 3935 38 0 19 chr13 25487389 25487869 -94257029 - L1PA5 LINE L1 0 6154 5684 203 318 0 23 chr13 25490935 25491023 -94253875 + MIR SINE MIR 85 170 -92 228 242 45 0 chr13 25491696 25491762 -94253136 + MIR3 SINE MIR 115 183 -25 258 246 43 0 chr13 25492978 25493047 -94251851 + MLT1J LTR MaLR 114 185 -326 1110 132 0 30 chr13 25493253 25493450 -94251448 - L1PB1 LINE L1 0 6151 5961 206 260 117 0 chr13 25493580 25493657 -94251241 + L2 LINE L2 3162 3247 -66 456 248 156 0 chr13 25495016 25495157 -94249741 + MIR SINE MIR 100 262 0 2320 124 33 28 chr13 25495311 25495673 -94249225 - THE1B LTR MaLR 0 364 1 559 299 32 16 chr13 25496457 25496644 -94248254 + MIR3 SINE MIR 16 205 -3 2545 99 14 8 chr13 25496958 25497311 -94247587 - THE1A LTR MaLR 0 355 1 1578 203 7 14 chr13 25497407 25497703 -94247195 - AluJb SINE Alu -18 294 1 237 337 71 0 chr13 25499527 25499625 -94245273 + L2 LINE L2 3168 3272 0 1297 293 82 7 chr13 25501104 25501569 -94243329 + MLT1J LTR MaLR 7 506 -5 438 276 53 58 chr13 25501582 25501825 -94243073 + LTR33 LTR ERVL 83 324 -197 238 321 43 41 chr13 25502592 25502772 -94242126 + L2 LINE L2 2782 2965 -307 948 163 0 109 chr13 25502774 25502995 -94241903 + MER3 DNA MER1_type 10 206 -3 602 311 91 76 chr13 25503253 25503636 -94241262 + L2 LINE L2 2854 3242 -30 287 49 24 0 chr13 25503829 25503870 -94241028 + (GA)n Simple_repeat Simple_repeat 1 42 0 533 294 169 47 chr13 25504774 25505453 -94239445 + HAL1 LINE L1 2 796 -1711 1104 142 73 10 chr13 25505453 25505657 -94239241 - MER20 DNA MER1_type 0 219 3 533 294 169 47 chr13 25505657 25505784 -94239114 + HAL1 LINE L1 796 906 -1601 256 223 0 0 chr13 25506231 25506309 -94238589 + L1MC5 LINE L1 7837 8014 -28 1559 203 45 0 chr13 25506318 25506608 -94238290 - AluJo SINE Alu -9 303 1 191 223 96 128 chr13 25506800 25506894 -94238004 + L2 LINE L2 2955 3045 -227 395 220 30 20 chr13 25506964 25507064 -94237834 + MER5A DNA MER1_type 86 186 -3 321 243 118 15 chr13 25507138 25507274 -94237624 + L1ME4a LINE L1 5940 6089 -32 1852 154 0 18 chr13 25509259 25509578 -94235320 - AluJo SINE Alu 0 314 1 1112 132 0 2 chr13 25510067 25510305 -94234593 + AluSx SINE Alu 2 273 -39 189 74 0 0 chr13 25510314 25510341 -94234557 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2348 53 0 7 chr13 25510578 25510860 -94234038 - AluY SINE Alu -4 307 28 857 10 10 0 chr13 25511227 25511329 -94233569 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 23 33 0 0 chr13 25511958 25511988 -94232910 + AT_rich Low_complexity Low_complexity 1 30 0 712 251 55 64 chr13 25512204 25512534 -94232364 - L1ME3 LINE L1 0 6162 5836 812 164 8 8 chr13 25513095 25513229 -94231669 - AluJo SINE Alu -178 134 1 1655 157 61 14 chr13 25513236 25513516 -94231382 - AluJb SINE Alu -19 293 1 2414 100 0 0 chr13 25514127 25514426 -94230472 - AluSx SINE Alu -13 299 1 184 236 112 45 chr13 25514490 25514579 -94230319 - L2 LINE L2 -10 3303 3209 191 262 0 0 chr13 25514680 25514722 -94230176 + L2 LINE L2 3261 3302 -11 523 276 72 0 chr13 25514930 25515082 -94229816 - MIR SINE MIR -16 246 84 658 280 70 5 chr13 25515986 25516200 -94228698 + MIR SINE MIR 3 230 -32 364 179 0 0 chr13 25516919 25516975 -94227923 - L2 LINE L2 0 3272 3217 * 416 214 232 36 chr13 25516968 25517136 -94227762 + MIR SINE MIR 48 248 -14 952 183 24 28 chr13 25517909 25518122 -94226776 + MER20 DNA MER1_type 1 212 -7 194 221 150 26 chr13 25518628 25518741 -94226157 + L2 LINE L2 2148 2274 -1040 2564 62 0 7 chr13 25519092 25519401 -94225497 - AluY SINE Alu -4 307 1 233 250 67 50 chr13 25519569 25519689 -94225209 - MIR SINE MIR -65 143 22 376 179 0 0 chr13 25520558 25520625 -94224273 - L1P5 LINE L1 -522 5634 5568 1926 106 0 19 chr13 25520980 25521245 -94223653 + AluSx SINE Alu 1 260 -52 394 333 59 15 chr13 25522136 25522271 -94222627 + MIR SINE MIR 9 149 -113 1833 177 0 23 chr13 25522313 25522623 -94222275 + AluJb SINE Alu 1 303 -9 200 274 48 0 chr13 25522783 25522845 -94222053 + MIR SINE MIR 197 261 -1 4480 187 26 19 chr13 25523529 25524230 -94220668 - L1MB3 LINE L1 -3 6180 5486 210 37 0 0 chr13 25524230 25524257 -94220641 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4480 187 26 19 chr13 25524257 25525051 -94219847 - L1MB3 LINE L1 -697 5486 4675 457 261 52 0 chr13 25525061 25525120 -94219778 + MIR SINE MIR 117 171 -91 234 0 0 0 chr13 25525120 25525146 -94219752 + (TG)n Simple_repeat Simple_repeat 2 27 0 457 261 52 0 chr13 25525146 25525201 -94219697 + MIR SINE MIR 171 237 -25 27 49 0 0 chr13 25525201 25525242 -94219656 + AT_rich Low_complexity Low_complexity 1 41 0 296 282 55 74 chr13 25525443 25525645 -94219253 + MIR SINE MIR 52 249 -13 1968 134 41 0 chr13 25526193 25526483 -94218415 - AluSx SINE Alu -10 302 1 21 57 0 0 chr13 25527105 25527140 -94217758 + AT_rich Low_complexity Low_complexity 1 35 0 203 156 0 0 chr13 25527625 25527657 -94217241 + (CA)n Simple_repeat Simple_repeat 1 32 0 397 257 112 33 chr13 25528280 25528432 -94216466 + L1ME4a LINE L1 5942 6105 -16 341 290 131 16 chr13 25528817 25529000 -94215898 - L1ME4a LINE L1 -209 5912 5709 256 254 0 56 chr13 25529017 25529088 -94215810 - L2 LINE L2 0 3272 3206 1357 199 38 72 chr13 25529218 25529609 -94215289 + MLT1B LTR MaLR 1 378 -12 216 196 89 0 chr13 25529613 25529669 -94215229 - L2 LINE L2 -266 3047 2987 364 347 57 17 chr13 25530486 25530662 -94214236 - L2 LINE L2 -609 2705 2523 * 803 304 149 9 chr13 25530653 25531110 -94213788 + L2 LINE L2 2763 3297 -16 373 270 56 51 chr13 25531100 25531296 -94213602 - L2 LINE L2 -793 2521 2325 * 1267 154 139 4 chr13 25531297 25531564 -94213334 + MLT1D LTR MaLR 1 303 -202 480 117 0 0 chr13 25532539 25532616 -94212282 + (CA)n Simple_repeat Simple_repeat 2 78 0 480 81 0 0 chr13 25533503 25533577 -94211321 + (TC)n Simple_repeat Simple_repeat 1 74 0 1594 182 45 18 chr13 25533785 25534275 -94210623 - MER74A LTR ERVL 0 558 1 215 171 98 0 chr13 25534425 25534466 -94210432 + L2 LINE L2 3210 3254 -18 317 300 99 41 chr13 25534488 25534731 -94210167 + L2 LINE L2 3002 3258 -14 333 287 100 34 chr13 25535776 25536031 -94208867 - L2 LINE L2 0 3313 2967 284 255 245 0 chr13 25536209 25536307 -94208591 - MER5A DNA MER1_type -2 187 66 2039 125 7 0 chr13 25536434 25536743 -94208155 + AluSx SINE Alu 1 311 0 302 28 0 0 chr13 25536747 25536783 -94208115 + AluSq/x SINE Alu 77 112 -191 569 148 0 0 chr13 25536784 25536865 -94208033 - AluS SINE Alu -229 83 3 1005 204 49 172 chr13 25536888 25537133 -94207765 - L1MC4 LINE L1 -555 7487 7213 1433 228 30 15 chr13 25537133 25537466 -94207432 - MER58B DNA MER1_type -3 338 1 1005 204 49 172 chr13 25537466 25537854 -94207044 - L1MC4 LINE L1 -829 7213 6779 216 0 0 0 chr13 25537854 25537878 -94207020 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1796 115 53 0 chr13 25537884 25538127 -94206771 - AluSg SINE Alu -48 262 7 1005 204 49 172 chr13 25538127 25538281 -94206617 - L1MC4 LINE L1 -1081 6961 6790 278 197 0 66 chr13 25538287 25538363 -94206535 + MER116 DNA Mariner 10 80 0 379 330 67 32 chr13 25538367 25538458 -94206440 - L1MC4a LINE L1 -1105 6703 6617 1898 158 24 0 chr13 25538458 25538755 -94206143 - AluSx SINE Alu -8 304 1 379 330 67 32 chr13 25538755 25538948 -94205950 - L1MC4a LINE L1 -1191 6617 6409 2465 71 0 19 chr13 25538978 25539286 -94205612 + AluY SINE Alu 1 302 -9 180 0 0 0 chr13 25539351 25539371 -94205527 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 361 231 99 0 chr13 25539763 25539854 -94205044 - MIR SINE MIR -71 191 92 963 246 32 7 chr13 25540544 25540821 -94204077 + L1PB4 LINE L1 5651 5934 -222 * 2427 174 72 18 chr13 25540580 25541139 -94203759 + L1MA9 LINE L1 5686 6274 -38 2501 84 10 0 chr13 25541785 25542094 -94202804 + AluSq SINE Alu 1 312 -1 2126 102 3 0 chr13 25543751 25544070 -94200828 - AluSx SINE Alu 0 320 1 492 273 78 7 chr13 25544233 25544387 -94200511 + L1ME4a LINE L1 5926 6090 -31 193 343 10 0 chr13 25544408 25544507 -94200391 - MIR SINE MIR -2 260 161 1637 111 4 4 chr13 25544536 25544761 -94200137 + AluSx SINE Alu 1 225 -87 272 278 28 0 chr13 25544778 25544886 -94200012 + L1M4 LINE L1 4301 4411 -1735 1753 122 0 0 chr13 25544889 25545119 -94199779 + AluSx SINE Alu 1 230 -82 3222 134 16 34 chr13 25545119 25545672 -94199226 - MER49 LTR ERV1 -380 543 1 359 224 12 12 chr13 25545689 25545774 -94199124 - MIR SINE MIR -115 147 63 2491 78 0 10 chr13 25546318 25546625 -94198273 + AluY SINE Alu 1 304 -7 467 248 118 6 chr13 25546720 25546881 -94198017 + MIR SINE MIR 79 257 -5 1025 173 51 19 chr13 25546986 25547200 -94197698 + MER58A DNA MER1_type 1 221 -3 2240 118 6 13 chr13 25547369 25547775 -94197123 - AluSp SINE Alu 0 404 1 276 197 0 70 chr13 25548138 25548172 -94196726 + GA-rich Low_complexity Low_complexity 2 30 -37 1897 92 0 34 chr13 25548172 25548434 -94196464 + AluSq SINE Alu 1 253 -60 276 197 0 70 chr13 25548434 25548470 -94196428 + GA-rich Low_complexity Low_complexity 30 67 0 1614 110 3 76 chr13 25548819 25549223 -94195675 + Charlie3 DNA MER1_type 1 2712 0 1192 136 0 0 chr13 25549238 25549414 -94195484 + AluSg/x SINE Alu 134 309 -1 232 325 65 8 chr13 25549697 25549820 -94195078 - MIR SINE MIR -131 131 2 242 303 50 30 chr13 25550001 25550100 -94194798 + MIR SINE MIR 97 197 -65 2292 95 0 0 chr13 25550128 25550449 -94194449 + AluSx SINE Alu 1 321 0 316 300 73 9 chr13 25550580 25550690 -94194208 - L2 LINE L2 -52 3220 3104 306 299 76 45 chr13 25551383 25551498 -94193400 - MIR SINE MIR -87 175 52 1235 146 173 11 chr13 25551498 25551758 -94193140 - AluJo SINE Alu 0 302 1 306 299 76 45 chr13 25551758 25551799 -94193099 - MIR SINE MIR -210 52 14 700 264 46 25 chr13 25551864 25552172 -94192726 + L2 LINE L2 2944 3313 0 2340 78 3 7 chr13 25553953 25554246 -94190652 + AluSx SINE Alu 1 292 -20 757 232 70 50 chr13 25554459 25554648 -94190250 + MLT1D LTR MaLR 2 186 -204 765 148 0 52 chr13 25554648 25554783 -94190115 + FLAM_A SINE Alu 2 129 -4 757 232 70 50 chr13 25554783 25554964 -94189934 + MLT1D LTR MaLR 186 390 0 300 228 13 51 chr13 25556206 25556285 -94188613 - L1MC5 LINE L1 -243 7718 7643 853 186 0 0 chr13 25556340 25556464 -94188434 + FLAM_C SINE Alu 1 124 -19 24 53 0 0 chr13 25556464 25556502 -94188396 + AT_rich Low_complexity Low_complexity 1 38 0 218 32 32 0 chr13 25556514 25556545 -94188353 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1012 98 8 0 chr13 25556560 25556692 -94188206 + AluJb SINE Alu 156 288 -24 403 343 43 61 chr13 25559997 25560507 -94184391 + L2 LINE L2 1242 1742 -1572 390 258 64 85 chr13 25561010 25561145 -94183753 - MIR SINE MIR -11 251 125 2548 155 31 0 chr13 25561145 25561564 -94183334 + MSTB1 LTR MaLR 1 432 0 390 258 64 85 chr13 25561564 25561657 -94183241 - MIR SINE MIR -137 125 32 230 302 128 39 chr13 25561642 25561821 -94183077 + L2 LINE L2 3119 3313 0 * 2094 119 48 23 chr13 25562778 25563131 -94181767 - THE1B LTR MaLR 0 364 3 792 189 7 0 chr13 25563542 25563690 -94181208 + FRAM SINE Alu 1 149 -17 234 333 0 0 chr13 25564220 25564307 -94180591 - L1MC4 LINE L1 -15 8027 7941 410 292 32 39 chr13 25564370 25564524 -94180374 - L2 LINE L2 0 3313 3161 1824 158 17 69 chr13 25564970 25565389 -94179509 + MER57A LTR ERV1 7 403 0 1734 112 120 12 chr13 25565856 25566115 -94178783 + AluSg SINE Alu 3 289 -21 1643 120 8 37 chr13 25566128 25566370 -94178528 + AluSg SINE Alu 56 290 -20 189 161 0 0 chr13 25567328 25567359 -94177539 - L2 LINE L2 -28 3244 3214 252 294 48 63 chr13 25567798 25567924 -94176974 + MIR3 SINE MIR 55 178 -30 2137 112 4 0 chr13 25568081 25568357 -94176541 + AluSx SINE Alu 1 277 -35 216 0 0 0 chr13 25568361 25568385 -94176513 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 450 302 71 61 chr13 25568579 25568874 -94176024 + HAL1 LINE L1 1315 1612 -895 1258 209 116 16 chr13 25568875 25569495 -94175403 + L1ME2 LINE L1 5357 6087 -77 189 74 0 0 chr13 25569497 25569524 -94175374 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2387 109 3 0 chr13 25569554 25569905 -94174993 - AluSq SINE Alu 0 352 1 22 0 0 0 chr13 25570252 25570274 -94174624 + AT_rich Low_complexity Low_complexity 1 22 0 2159 128 0 0 chr13 25570392 25570682 -94174216 - AluSx SINE Alu -22 290 1 239 243 40 14 chr13 25570880 25570954 -94173944 + HAL1b LINE L1 828 903 -445 219 211 0 39 chr13 25571167 25571219 -94173679 + GA-rich Low_complexity Low_complexity 4 53 0 1197 124 5 57 chr13 25571464 25571681 -94173217 + AluJb SINE Alu 101 307 0 182 139 70 0 chr13 25571811 25571854 -94173044 - L2 LINE L2 -2 3311 3266 2260 83 7 0 chr13 25573509 25573814 -94171084 + AluSc SINE Alu 1 307 0 1415 224 62 3 chr13 25573915 25574267 -94170631 - MLT1A2 LTR MaLR -1 373 1 211 27 27 27 chr13 25574827 25574864 -94170034 + (CTGGGG)n Simple_repeat Simple_repeat 1 37 0 495 303 20 13 chr13 25577597 25577749 -94167149 + L2 LINE L2 3161 3313 0 514 93 0 0 chr13 25578378 25578453 -94166445 - MADE1 DNA Mariner 0 80 6 364 141 31 0 chr13 25578494 25578558 -94166340 - MER5B DNA MER1_type 0 178 113 2428 74 0 7 chr13 25578558 25578854 -94166044 + AluY SINE Alu 1 294 -17 2178 122 3 3 chr13 25578990 25579286 -94165612 - AluSx SINE Alu -16 296 1 2170 114 74 10 chr13 25579441 25579845 -94165053 + L1MB3 LINE L1 5752 6181 -2 856 165 18 18 chr13 25580624 25580788 -94164110 + FRAM SINE Alu 2 165 -1 2364 109 0 0 chr13 25581006 25581308 -94163590 + AluSg SINE Alu 1 302 -8 2128 108 4 0 chr13 25582829 25583127 -94161771 - AluSc SINE Alu 0 299 1 21 36 0 0 chr13 25587837 25587865 -94157033 + AT_rich Low_complexity Low_complexity 1 28 0 281 261 169 8 chr13 25591063 25591193 -94153705 + MIR SINE MIR 8 158 -104 2403 194 18 6 chr13 25592025 25592520 -94152378 + L1MB3 LINE L1 5683 6183 0 342 286 11 0 chr13 25592644 25592735 -94152163 + MER91A DNA MER1_type 91 182 -14 237 352 47 16 chr13 25592804 25592932 -94151966 + L2 LINE L2 3132 3263 -9 250 244 0 39 chr13 25592932 25593010 -94151888 + GA-rich Low_complexity Low_complexity 1 75 0 183 80 0 0 chr13 25593366 25593391 -94151507 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 826 172 0 15 chr13 25593394 25593528 -94151370 - AluJo SINE Alu -178 134 3 187 200 22 0 chr13 25594895 25594940 -94149958 + MIR SINE MIR 90 135 -73 1254 248 73 38 chr13 25595335 25595713 -94149185 - L1ME3A LINE L1 -5 6165 5769 1663 159 22 57 chr13 25595713 25596028 -94148870 - AluJo SINE Alu -6 306 3 1254 248 73 38 chr13 25596028 25596071 -94148827 - L1ME3A LINE L1 -401 5769 5729 892 196 0 0 chr13 25597110 25597268 -94147630 + FAM SINE Alu 1 158 -17 372 59 0 0 chr13 25597270 25597321 -94147577 + (CA)n Simple_repeat Simple_repeat 1 51 0 625 95 0 0 chr13 25599587 25599668 -94145230 + THE1B LTR MaLR 56 136 -228 865 225 83 94 chr13 25599668 25600103 -94144795 - LTR7 LTR ERV1 0 450 21 1446 116 35 30 chr13 25600133 25600365 -94144533 + THE1B LTR MaLR 132 364 0 252 127 109 0 chr13 25600817 25600872 -94144026 - L1ME3A LINE L1 -569 5615 5555 239 114 0 0 chr13 25600872 25600907 -94143991 - AluJo SINE Alu -8 294 260 233 143 0 0 chr13 25600907 25600942 -94143956 + LTR32 LTR ERVL 15 49 -422 1200 191 17 17 chr13 25600942 25601172 -94143726 + LTR32 LTR ERVL 232 461 -10 1461 175 15 4 chr13 25601179 25601442 -94143456 - AluJo SINE Alu -46 266 1 472 175 0 0 chr13 25601442 25601522 -94143376 - L1ME3A LINE L1 -609 5565 5486 297 172 9 0 chr13 25602164 25602234 -94142664 - L1P LINE L1 -783 5363 5298 781 213 0 0 chr13 25602370 25602534 -94142364 - L1ME3A LINE L1 -844 5302 5139 1946 105 3 20 chr13 25602945 25603239 -94141659 - AluSx SINE Alu -23 289 1 1637 152 43 23 chr13 25605928 25606231 -94138667 + AluJo SINE Alu 1 309 -3 2230 88 0 3 chr13 25607518 25607815 -94137083 + AluSx SINE Alu 1 296 -16 215 182 288 0 chr13 25608286 25608352 -94136546 - MIR SINE MIR 0 262 178 260 200 0 0 chr13 25608358 25608408 -94136490 - Alu SINE Alu -2 300 251 945 143 0 0 chr13 25608432 25608565 -94136333 - FLAM_C SINE Alu 0 133 1 445 312 22 0 chr13 25608590 25608728 -94136170 - MIR SINE MIR -109 153 13 385 242 152 0 chr13 25608945 25609044 -94135854 + L2 LINE L2 3200 3313 0 1104 213 4 25 chr13 25609411 25609646 -94135252 + MLT1A1 LTR MaLR 1 230 -135 922 142 26 13 chr13 25609731 25609886 -94135012 + MLT1A1 LTR MaLR 208 364 -1 285 249 96 28 chr13 25611033 25611210 -94133688 + MER117 DNA MER1_type 3 191 -6 413 272 225 0 chr13 25611431 25611600 -94133298 + MIR SINE MIR 1 207 -55 3155 144 38 6 chr13 25611983 25612509 -94132389 - L1MC3 LINE L1 -6 7779 7237 1357 174 161 156 chr13 25612509 25612550 -94132348 - MLT1A1 LTR MaLR 0 396 357 2368 76 3 6 chr13 25612550 25612864 -94132034 + AluSp SINE Alu 1 313 0 1357 174 161 156 chr13 25612864 25613214 -94131684 - MLT1A1 LTR MaLR -39 357 3 2124 166 26 19 chr13 25613214 25613631 -94131267 - L1MC3 LINE L1 -542 7243 6824 4328 179 68 28 chr13 25613637 25614575 -94130323 - L1MD2 LINE L1 -11 6348 5373 354 238 158 30 chr13 25615336 25615538 -94129360 + MLT1J LTR MaLR 277 504 -7 2761 69 11 6 chr13 25617233 25617597 -94127301 - L1PA8 LINE L1 -2 6170 5805 258 257 148 29 chr13 25617881 25617996 -94126902 + MIR SINE MIR 26 153 -55 1319 199 61 61 chr13 25619271 25619729 -94125169 - LTR40b LTR ERVL -2 460 3 385 263 275 7 chr13 25620592 25620711 -94124187 - L2 LINE L2 0 3272 3186 2086 135 0 0 chr13 25620711 25621023 -94123875 + AluSx SINE Alu 1 312 0 385 263 275 7 chr13 25621023 25621386 -94123512 - L2 LINE L2 -86 3186 2618 233 29 29 0 chr13 25621637 25621671 -94123227 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2185 102 0 31 chr13 25621678 25622000 -94122898 + AluSq SINE Alu 1 312 -1 369 277 0 11 chr13 25622916 25623010 -94121888 - LTR67 LTR ERVL 0 557 465 857 247 112 58 chr13 25623828 25624572 -94120326 + L1MDa LINE L1 1305 2127 -4452 607 256 81 12 chr13 25624625 25625140 -94119758 + L1MDa LINE L1 2202 2724 -3816 205 172 230 23 chr13 25625141 25625228 -94119670 + L3b LINE CR1 1364 1468 -115 545 128 0 0 chr13 25625910 25626004 -94118894 + AluJ/FRAM SINE Alu 218 311 -1 661 158 8 17 chr13 25626141 25626261 -94118637 + FLAM_A SINE Alu 1 119 -14 186 133 0 0 chr13 25626261 25626291 -94118607 + (CATA)n Simple_repeat Simple_repeat 3 32 0 857 261 9 9 chr13 25626985 25627200 -94117698 - MIR SINE MIR 0 262 48 434 266 93 0 chr13 25627413 25627552 -94117346 + MIR SINE MIR 85 236 -26 1984 117 13 3 chr13 25627621 25627919 -94116979 + AluSx SINE Alu 1 301 -11 558 313 22 28 chr13 25628279 25628458 -94116440 + MER91A DNA MER1_type 1 178 -18 1792 186 67 6 chr13 25629594 25629938 -94114960 + MLT1A1 LTR MaLR 1 365 0 2515 142 32 5 chr13 25630563 25630971 -94113927 + MSTB1 LTR MaLR 1 419 -13 1145 183 15 0 chr13 25630977 25631179 -94113719 + MSTB1-int LTR MaLR 1 205 -1446 1389 194 0 22 chr13 25631182 25631460 -94113438 + AluJb SINE Alu 30 301 -11 7060 203 45 13 chr13 25631467 25632878 -94112020 + MSTB1-int LTR MaLR 195 1651 0 2665 137 16 32 chr13 25632878 25633317 -94111581 + MSTB1 LTR MaLR 1 432 0 187 184 66 92 chr13 25633408 25633484 -94111414 + L2 LINE L2 2741 2814 -500 472 161 75 46 chr13 25633894 25634002 -94110896 + MLT1J1 LTR MaLR 19 129 -321 377 295 109 13 chr13 25633983 25634139 -94110759 + MLT1J2 LTR MaLR 156 326 -124 * 870 173 13 26 chr13 25634161 25634317 -94110581 - MER70A LTR ERVL 0 472 319 1199 185 129 29 chr13 25634318 25634480 -94110418 - THE1C LTR MaLR 0 375 231 3871 97 7 9 chr13 25634480 25635028 -94109870 - L1PA8 LINE L1 -5 6167 5621 1199 185 129 29 chr13 25635028 25635206 -94109692 - THE1C LTR MaLR -144 231 1 * 1479 171 3 165 chr13 25635206 25635591 -94109307 - MER70B LTR ERVL -256 322 1 1523 159 3 64 chr13 25635635 25635783 -94109115 + AluJo SINE Alu 1 120 -192 1809 167 3 0 chr13 25635783 25636076 -94108822 + AluSx SINE Alu 1 294 -18 1523 159 3 64 chr13 25636076 25636253 -94108645 + AluJo SINE Alu 120 306 -6 237 236 14 28 chr13 25636330 25636402 -94108496 + MLT1J2 LTR MaLR 370 440 -10 2070 196 21 71 chr13 25636848 25637369 -94107529 + MLT1E2 LTR MaLR 2 496 -130 1545 331 57 19 chr13 25637378 25638152 -94106746 + HERV16 LTR ERVL 2395 3091 -1905 2153 125 0 0 chr13 25638778 25639090 -94105808 - AluSx SINE Alu 0 312 1 375 322 25 0 chr13 25640107 25640228 -94104670 - L2 LINE L2 -1 3312 3189 426 39 0 0 chr13 25640388 25640440 -94104458 + (TG)n Simple_repeat Simple_repeat 2 53 0 512 306 48 68 chr13 25640444 25640754 -94104144 + L3 LINE CR1 369 672 -905 3828 211 49 21 chr13 25640805 25641586 -94103312 + L1MB8 LINE L1 4079 5001 -1173 236 77 26 0 chr13 25641586 25641625 -94103273 + (CA)n Simple_repeat Simple_repeat 1 40 0 3828 211 49 21 chr13 25641625 25642158 -94102740 + L1MB8 LINE L1 5001 5518 -656 2912 175 15 17 chr13 25642164 25642748 -94102150 + L1MB8 LINE L1 5591 6173 -5 283 162 0 29 chr13 25642749 25642817 -94102081 + GA-rich Low_complexity Low_complexity 2 67 0 255 102 82 10 chr13 25643106 25643204 -94101694 + (CA)n Simple_repeat Simple_repeat 2 106 0 435 175 305 19 chr13 25643461 25643615 -94101283 + MER69 DNA AcHobo 2189 2386 -140 391 181 42 0 chr13 25643624 25643696 -94101202 + FLAM_A SINE Alu 52 126 -7 470 98 85 12 chr13 25643712 25643876 -94101022 + (CA)n Simple_repeat Simple_repeat 1 176 0 825 163 60 0 chr13 25643876 25644042 -94100856 + AluJo SINE Alu 127 302 -10 289 178 30 24 chr13 25644153 25644236 -94100662 + MER69 DNA AcHobo 2420 2504 -22 24 0 0 0 chr13 25645023 25645047 -94099851 + AT_rich Low_complexity Low_complexity 1 24 0 1932 109 13 35 chr13 25645047 25645235 -94099663 - L1PB1 LINE L1 0 6151 5971 2236 101 3 0 chr13 25645235 25645543 -94099355 - AluSx SINE Alu -3 309 1 1932 109 13 35 chr13 25645543 25645666 -94099232 - L1PB1 LINE L1 -180 5971 5847 990 96 0 0 chr13 25645667 25645803 -94099095 - AluJb SINE Alu -176 136 1 1880 95 57 8 chr13 25847585 25847847 -93897051 + AluSg SINE Alu 31 305 -5 1049 121 151 34 chr13 25847969 25848175 -93896723 + MER30 DNA MER1_type 1 230 0 1735 144 72 4 chr13 25848799 25849076 -93895822 - AluJo SINE Alu -16 296 1 4890 217 103 14 chr13 25849615 25849918 -93894980 + L1M4 LINE L1 3585 3860 -2286 2578 63 0 0 chr13 25849918 25850217 -93894681 + AluY SINE Alu 3 301 -10 4890 217 103 14 chr13 25850217 25850494 -93894404 + L1M4 LINE L1 3860 4111 -2035 2337 91 0 0 chr13 25850494 25850792 -93894106 + AluSx SINE Alu 1 298 -14 4890 217 103 14 chr13 25850792 25851632 -93893266 + L1M4 LINE L1 4111 5133 -1013 1052 161 50 5 chr13 25851633 25851832 -93893066 + AluJo SINE Alu 1 208 -104 2524 121 6 3 chr13 25852505 25852868 -93892030 - THE1B LTR MaLR 0 364 1 269 297 66 0 chr13 25853063 25853154 -93891744 - MIR SINE MIR -67 141 45 2433 65 7 3 chr13 25853253 25853547 -93891351 - AluY SINE Alu -16 295 1 1557 170 32 28 chr13 25853666 25853883 -93891015 - AluJb SINE Alu 0 323 103 1666 164 105 9 chr13 25853883 25854207 -93890691 - THE1A LTR MaLR 0 355 1 1557 170 32 28 chr13 25854207 25854311 -93890587 - AluJb SINE Alu -220 103 1 2343 69 14 0 chr13 25854487 25854775 -93890123 - AluY SINE Alu -19 292 1 296 113 132 0 chr13 25854775 25854828 -93890070 - MER68 LTR ERV1 -501 61 2 371 203 49 74 chr13 25854829 25854992 -93889906 - L1MC4 LINE L1 -646 7396 7238 * 1222 257 115 6 chr13 25854974 25855551 -93889347 - L1MC4a LINE L1 -791 7060 6467 375 113 0 0 chr13 25855738 25855800 -93889098 + (CA)n Simple_repeat Simple_repeat 1 62 0 497 143 0 11 chr13 25856612 25856703 -93888195 + (TA)n Simple_repeat Simple_repeat 1 90 0 1519 169 10 40 chr13 25856704 25857005 -93887893 - AluJo SINE Alu -17 295 4 2360 100 0 25 chr13 25857411 25857731 -93887167 + AluSx SINE Alu 1 312 0 3002 189 52 9 chr13 25857732 25858373 -93886525 + L1 LINE L1 4369 5036 -1110 1289 101 37 5 chr13 25858374 25858563 -93886335 - AluSc SINE Alu -10 299 105 657 111 0 0 chr13 25858567 25858657 -93886241 - LTR12 LTR ERV1 0 714 625 349 128 75 85 chr13 25858664 25858758 -93886140 - LTR30 LTR ERV1 -98 624 378 1166 130 149 7 chr13 25858785 25859000 -93885898 - LTR12 LTR ERV1 -417 2021 60 289 122 0 0 chr13 25858977 25859018 -93885880 - LTR12 LTR ERV1 -524 190 150 * 1434 224 151 7 chr13 25859167 25859577 -93885321 - MLT2B1 LTR ERVL -50 470 2 365 250 24 32 chr13 25860210 25860334 -93884564 + MIR SINE MIR 69 191 -71 577 226 17 0 chr13 25861855 25861970 -93882928 - MER94 DNA DNA -1 133 17 218 192 39 0 chr13 25862457 25862509 -93882389 + L2 LINE L2 3217 3270 -2 312 197 197 0 chr13 25863194 25863311 -93881587 + L1M4 LINE L1 2416 2555 -3591 686 276 80 46 chr13 25863320 25863637 -93881261 + L1ME3A LINE L1 5566 5899 -271 2404 109 0 0 chr13 25863637 25863949 -93880949 + AluSx SINE Alu 1 312 0 686 276 80 46 chr13 25863949 25864004 -93880894 + L1ME3A LINE L1 5899 5951 -219 1092 123 0 59 chr13 25865424 25865635 -93879263 + AluY SINE Alu 136 335 0 433 308 114 26 chr13 25866183 25866812 -93878086 + L2 LINE L2 2637 3313 0 26 50 0 0 chr13 25866817 25866857 -93878041 + AT_rich Low_complexity Low_complexity 1 40 0 2171 102 46 0 chr13 25867008 25867293 -93877605 - AluSx SINE Alu -6 306 9 2149 96 46 0 chr13 25867312 25867594 -93877304 - AluSx SINE Alu -1 311 17 2502 91 0 0 chr13 25867637 25867945 -93876953 - AluSg SINE Alu -2 308 1 300 169 0 108 chr13 25868558 25868753 -93876145 + GA-rich Low_complexity Low_complexity 3 176 0 2042 105 0 0 chr13 25868852 25869119 -93875779 - AluSx SINE Alu -45 267 1 423 254 65 30 chr13 25870739 25870908 -93873990 + MER5B DNA MER1_type 1 175 -3 428 284 60 56 chr13 25871003 25871253 -93873645 - MIR SINE MIR -2 260 10 200 318 165 0 chr13 25872829 25872914 -93871984 + MIR SINE MIR 48 146 -116 211 311 22 0 chr13 25873004 25873094 -93871804 + MIR SINE MIR 171 262 0 218 291 0 0 chr13 25873266 25873321 -93871577 + L2 LINE L2 3210 3264 -8 2127 138 0 0 chr13 25873646 25873936 -93870962 + AluSx SINE Alu 1 290 -22 1310 241 90 40 chr13 25874259 25874703 -93870195 + MLT1C LTR MaLR 2 467 0 665 234 50 98 chr13 25875094 25875376 -93869522 + L1M4c LINE L1 1397 1691 -4692 1775 168 3 3 chr13 25875376 25875667 -93869231 + AluJo SINE Alu 5 295 -17 665 234 50 98 chr13 25875667 25875897 -93869001 + L1M4c LINE L1 1691 2156 -4227 1624 89 0 0 chr13 25875921 25876123 -93868775 + AluSg SINE Alu 1 202 -108 2124 128 59 64 chr13 25876265 25876672 -93868226 + MSTC LTR MaLR 18 422 -6 209 327 18 26 chr13 25877886 25877999 -93866899 - L2 LINE L2 -244 3028 2917 223 324 54 61 chr13 25878296 25878592 -93866306 - L2 LINE L2 -130 3142 2849 184 323 82 41 chr13 25879403 25879623 -93865275 + L2 LINE L2 2560 2788 -526 210 162 0 0 chr13 25880040 25880077 -93864821 + L2 LINE L2 3277 3313 0 * 256 286 281 15 chr13 25880075 25880271 -93864627 - MIR SINE MIR -1 261 14 223 301 75 0 chr13 25880574 25880667 -93864231 - MIR SINE MIR -102 160 61 1267 180 9 14 chr13 25880722 25880939 -93863959 + AluJo SINE Alu 1 216 -96 285 287 44 94 chr13 25882100 25882281 -93862617 - L2 LINE L2 -1 3312 3141 206 164 200 0 chr13 25882276 25882331 -93862567 - MIR SINE MIR -127 135 70 * 36 40 0 0 chr13 25884300 25884350 -93860548 + AT_rich Low_complexity Low_complexity 1 50 0 1831 80 0 0 chr13 25884717 25884943 -93859955 - AluSp SINE Alu -3 310 85 295 327 90 13 chr13 25885800 25885956 -93858942 + MIR3 SINE MIR 2 169 -39 29 0 0 0 chr13 25886057 25886086 -93858812 + AT_rich Low_complexity Low_complexity 1 29 0 306 160 267 0 chr13 25886378 25886453 -93858445 + MIR SINE MIR 83 177 -85 263 81 0 0 chr13 25886860 25886897 -93858001 + MADE1 DNA Mariner 44 80 0 646 171 73 0 chr13 25888222 25888345 -93856553 - FLAM_C SINE Alu 0 133 2 1241 172 66 46 chr13 25890099 25890401 -93854497 - AluJb SINE Alu -4 308 1 317 232 0 0 chr13 25890790 25890859 -93854039 - L1P LINE L1 -4465 1681 1613 1675 141 49 42 chr13 25892181 25892487 -93852411 - AluJb SINE Alu -4 308 1 1138 146 44 0 chr13 25893098 25893304 -93851594 + L1PA11 LINE L1 5960 6174 0 321 78 118 0 chr13 25893960 25894011 -93850887 - L1MA9 LINE L1 0 6312 6256 343 109 0 0 chr13 25895343 25895389 -93849509 - MLT1C LTR MaLR -2 465 420 1896 149 0 0 chr13 25895391 25895673 -93849225 + MER7A DNA MER2_type 67 346 0 1686 149 113 69 chr13 25895674 25896063 -93848835 - MLT1C LTR MaLR -56 411 6 2292 103 0 13 chr13 25897238 25897549 -93847349 - AluSx SINE Alu -1 311 5 543 226 62 6 chr13 25897685 25897862 -93847036 - L1MC5 LINE L1 -476 7485 7299 293 161 18 0 chr13 25898028 25898084 -93846814 - L1MC5 LINE L1 -733 7228 7172 319 109 0 0 chr13 25898502 25898548 -93846350 - MLT1C LTR MaLR -2 465 420 1550 184 0 0 chr13 25898550 25898832 -93846066 + MER7A DNA MER2_type 67 346 0 1353 167 113 72 chr13 25898834 25899223 -93845675 - MLT1C LTR MaLR -57 410 6 1094 217 91 69 chr13 25900902 25900992 -93843906 - MLT1D LTR MaLR 0 505 418 2502 74 0 7 chr13 25900992 25901302 -93843596 + AluSc SINE Alu 2 309 0 1094 217 91 69 chr13 25901302 25901705 -93843193 - MLT1D LTR MaLR -87 418 1 1938 94 98 4 chr13 25903054 25903320 -93841578 - AluSx SINE Alu -21 291 1 2519 71 0 0 chr13 25903397 25903706 -93841192 - AluY SINE Alu -1 310 2 3276 195 84 83 chr13 25903717 25904567 -93840331 - L1MA10 LINE L1 0 6334 5486 1417 182 43 17 chr13 25904567 25904869 -93840029 - AluJo SINE Alu -2 310 1 3276 195 84 83 chr13 25904869 25905084 -93839814 - L1MA10 LINE L1 -848 5486 5273 1663 134 0 8 chr13 25905084 25905322 -93839576 - AluSx SINE Alu -76 236 1 3276 195 84 83 chr13 25905322 25905690 -93839208 - L1MA10 LINE L1 -1061 5273 4907 261 196 0 0 chr13 25905690 25905736 -93839162 - FRAM SINE Alu -63 103 58 3276 195 84 83 chr13 25905736 25906127 -93838771 - L1MA10 LINE L1 -1427 4907 4315 1503 86 27 0 chr13 25906132 25906354 -93838544 - L1MA5 LINE L1 -2 6298 6071 1361 197 44 7 chr13 25906368 25906662 -93838236 + MER1B DNA MER1_type 35 339 0 1239 237 50 11 chr13 25906841 25907200 -93837698 - L1M4 LINE L1 -1815 4567 4195 1584 209 10 3 chr13 25907215 25907507 -93837391 - AluSx SINE Alu -18 294 1 211 68 45 0 chr13 25907708 25907734 -93837164 + (TA)n Simple_repeat Simple_repeat 1 31 -15 2155 82 35 0 chr13 25907734 25908016 -93836882 - AluSg SINE Alu -18 292 1 211 68 45 0 chr13 25908016 25908033 -93836865 + (TA)n Simple_repeat Simple_repeat 31 46 0 558 230 50 98 chr13 25908137 25908270 -93836628 - L1M4 LINE L1 -4227 2156 2018 1862 155 3 3 chr13 25908270 25908560 -93836338 - AluJo SINE Alu -18 294 5 558 230 50 98 chr13 25908560 25908842 -93836056 - L1M4 LINE L1 -4365 2018 1397 1288 234 90 40 chr13 25909233 25909677 -93835221 - MLT1C LTR MaLR 0 467 2 2073 122 4 0 chr13 25910000 25910278 -93834620 - AluSq SINE Alu -22 291 13 1520 176 0 58 chr13 25911337 25911632 -93833266 - AluJb SINE Alu -34 278 1 21 36 0 0 chr13 25911777 25911805 -93833093 + AT_rich Low_complexity Low_complexity 1 28 0 1624 167 17 27 chr13 25911889 25912183 -93832715 - AluJo SINE Alu -10 302 12 1788 156 17 7 chr13 25912198 25912486 -93832412 - AluJb SINE Alu -19 293 3 489 266 85 19 chr13 25912535 25913083 -93831815 - L1MC5 LINE L1 -537 7495 7004 298 195 17 93 chr13 25913159 25913277 -93831621 - L1MC4 LINE L1 -989 7053 6945 2395 87 0 0 chr13 25913297 25913597 -93831301 - AluSc SINE Alu -9 300 1 377 182 15 83 chr13 25913622 25913754 -93831144 - L1MC4 LINE L1 -989 7053 6931 * 717 232 87 5 chr13 25913746 25914211 -93830687 - L1MC4 LINE L1 -6 8036 7390 189 74 0 0 chr13 25914257 25914284 -93830614 + (TG)n Simple_repeat Simple_repeat 2 28 0 1140 127 0 40 chr13 25914284 25914457 -93830441 - AluSg/x SINE Alu -26 286 121 293 143 20 0 chr13 25914459 25914508 -93830390 - Alu SINE Alu -252 50 1 787 159 15 0 chr13 25914516 25914648 -93830250 - Tigger4(Zombi) DNA MER2_type -2596 135 2 1338 221 118 17 chr13 25914668 25915075 -93829823 - L1MC4 LINE L1 -893 7149 6702 2266 113 7 0 chr13 25915095 25915397 -93829501 + AluSx SINE Alu 1 304 -8 303 282 137 0 chr13 25915769 25915886 -93829012 + MIR SINE MIR 118 250 -12 332 246 32 40 chr13 25916060 25916186 -93828712 - L1ME3A LINE L1 -50 6120 5996 262 252 16 118 chr13 25916500 25916627 -93828271 + L2 LINE L2 3155 3268 -4 2090 119 0 0 chr13 25916782 25917077 -93827821 - AluSx SINE Alu -17 295 1 414 252 101 0 chr13 25917423 25917542 -93827356 + MER94 DNA DNA 3 133 -1 254 167 21 0 chr13 25918015 25918063 -93826835 - L1M4c LINE L1 -6207 177 129 534 160 10 0 chr13 25918063 25918163 -93826735 + LTR47A LTR ERVL 329 429 -23 1668 269 70 29 chr13 25918214 25918768 -93826130 - MLT1E LTR MaLR -16 577 1 298 241 62 56 chr13 25919404 25919599 -93825299 - L1MC5 LINE L1 -36 7925 7730 180 0 0 0 chr13 25919883 25919903 -93824995 + (TATG)n Simple_repeat Simple_repeat 2 21 0 2057 91 25 7 chr13 25919906 25920191 -93824707 - AluSq SINE Alu -23 290 1 2072 129 0 7 chr13 25920686 25920981 -93823917 - AluSx SINE Alu -19 293 1 21 57 0 0 chr13 25921033 25921068 -93823830 + AT_rich Low_complexity Low_complexity 1 35 0 1406 176 65 11 chr13 25921131 25921409 -93823489 - AluJb SINE Alu -19 293 1 1685 155 0 41 chr13 25922271 25922562 -93822336 - AluJo SINE Alu -33 279 1 1615 77 14 9 chr13 25922764 25922984 -93821914 - AluY SINE Alu -9 302 82 207 219 0 0 chr13 25923942 25923983 -93820915 + T-rich Low_complexity Low_complexity 1 41 0 261 264 101 16 chr13 25924203 25924332 -93820566 + HAL1b LINE L1 742 881 -467 324 289 22 52 chr13 25924432 25924567 -93820331 + HAL1b LINE L1 808 938 -410 254 249 119 50 chr13 25924981 25925129 -93819769 - MIR SINE MIR -45 217 64 1052 212 35 64 chr13 25925736 25926109 -93818789 - L1M4 LINE L1 -5359 1183 822 347 326 149 18 chr13 25926221 25926503 -93818395 - L1M4 LINE L1 -6036 610 292 1347 159 151 0 chr13 25926725 25926970 -93817928 - AluJo SINE Alu -30 282 1 201 274 151 28 chr13 25929511 25929617 -93815281 - MIR SINE MIR -32 230 112 4357 154 45 23 chr13 25929991 25930922 -93813976 - L1P LINE L1 -5184 962 11 21 57 0 0 chr13 25931057 25931092 -93813806 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 25931171 25931192 -93813706 + AT_rich Low_complexity Low_complexity 1 21 0 251 257 169 27 chr13 25931218 25931366 -93813532 + MER112 DNA MER1_type 60 228 -32 2489 121 6 3 chr13 25932557 25932920 -93811978 - THE1B LTR MaLR 0 364 1 294 308 66 0 chr13 25933115 25933206 -93811692 - MIR SINE MIR -67 141 45 2406 64 7 3 chr13 25933305 25933600 -93811298 - AluY SINE Alu -15 296 1 1539 170 32 28 chr13 25933719 25933936 -93810962 - AluJb SINE Alu 0 323 103 1663 154 105 9 chr13 25933936 25934260 -93810638 - THE1A LTR MaLR 0 355 1 1539 170 32 28 chr13 25934260 25934364 -93810534 - AluJb SINE Alu -220 103 1 329 275 62 115 chr13 25934409 25934540 -93810358 - L1MEd LINE L1 -5205 914 778 2414 73 0 0 chr13 25934540 25934829 -93810069 - AluY SINE Alu -19 292 4 329 275 62 115 chr13 25934829 25935392 -93809506 - L1MEd LINE L1 -5341 778 257 22 0 0 0 chr13 25935537 25935559 -93809339 + AT_rich Low_complexity Low_complexity 1 22 0 1560 139 124 15 chr13 25935774 25936040 -93808858 - AluSg SINE Alu -15 295 1 182 238 24 0 chr13 25936773 25936815 -93808083 - MIR3 SINE MIR -13 195 153 402 282 96 19 chr13 25937290 25937446 -93807452 - MIR SINE MIR -7 255 88 992 209 76 166 chr13 25938272 25938506 -93806392 + L1ME3 LINE L1 5459 5712 -450 2039 114 31 0 chr13 25938506 25938795 -93806103 + AluSp SINE Alu 1 298 -15 992 209 76 166 chr13 25938795 25939254 -93805644 + L1ME3 LINE L1 5712 6090 -72 250 232 98 24 chr13 25939265 25939347 -93805551 + L1ME3 LINE L1 6069 6156 -6 2488 59 7 0 chr13 25939390 25939693 -93805205 - AluSp SINE Alu -8 305 1 26 50 0 0 chr13 25940733 25940773 -93804125 + AT_rich Low_complexity Low_complexity 1 40 0 839 262 85 52 chr13 25942698 25943122 -93801776 - L1ME3 LINE L1 -81 6081 5644 2124 75 4 0 chr13 25943170 25943437 -93801461 - AluSp SINE Alu -45 268 1 26 50 0 0 chr13 25944477 25944517 -93800381 + AT_rich Low_complexity Low_complexity 1 40 0 355 301 104 26 chr13 25946146 25946339 -93798559 - MIR SINE MIR -48 214 7 2522 50 0 0 chr13 25946528 25946827 -93798071 + AluY SINE Alu 1 299 -12 37 39 0 0 chr13 25947384 25947435 -93797463 + AT_rich Low_complexity Low_complexity 1 51 0 2432 80 0 0 chr13 25948157 25948457 -93796441 + AluSx SINE Alu 1 300 -12 231 245 88 29 chr13 25948755 25948857 -93796041 + L2 LINE L2 2932 3039 -233 189 368 0 0 chr13 25949004 25949061 -93795837 + L2 LINE L2 3234 3290 -23 31 26 0 0 chr13 25950454 25950492 -93794406 + AT_rich Low_complexity Low_complexity 1 38 0 900 201 165 25 chr13 25950547 25950826 -93794072 - MER2 DNA MER2_type 0 345 28 1242 210 205 7 chr13 25950965 25951540 -93793358 + L1M4 LINE L1 2271 2959 -3187 262 297 106 59 chr13 25951547 25951803 -93793095 - LTR16A1 LTR ERVL -2 455 188 11684 111 38 57 chr13 25953080 25953419 -93791479 - Tigger1 DNA MER2_type 0 2418 2074 730 33 0 0 chr13 25953419 25953509 -93791389 - AluY SINE Alu -8 303 214 11684 111 38 57 chr13 25953509 25955240 -93789658 - Tigger1 DNA MER2_type -344 2074 300 573 149 0 0 chr13 25955251 25955345 -93789553 - AluSp/q SINE Alu -19 294 201 1097 182 22 26 chr13 25955445 25955714 -93789184 - Tigger1 DNA MER2_type -2133 285 18 2286 89 3 3 chr13 25956180 25956471 -93788427 - AluSx SINE Alu -21 291 1 1664 254 50 22 chr13 25956473 25956941 -93787957 - L1MDa LINE L1 -3172 3368 2914 188 33 0 33 chr13 25956941 25956971 -93787927 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1463 168 4 0 chr13 25956977 25957209 -93787689 - AluJo SINE Alu -30 282 50 1664 254 50 22 chr13 25957209 25957419 -93787479 - L1MDa LINE L1 -3630 2910 2664 1823 253 64 16 chr13 25957433 25958196 -93786702 - L1MDa LINE L1 -3983 2557 1758 901 134 23 12 chr13 25958475 25958646 -93786252 + Tigger1 DNA MER2_type 300 472 -1946 180 0 0 0 chr13 25958648 25958668 -93786230 + (CA)n Simple_repeat Simple_repeat 1 20 0 2252 90 24 0 chr13 25958677 25958967 -93785931 + AluSc SINE Alu 3 299 -10 2742 189 52 9 chr13 25958968 25959609 -93785289 - L1 LINE L1 -1110 5036 4369 2370 97 0 25 chr13 25959610 25959930 -93784968 - AluSx SINE Alu 0 312 1 1621 164 10 39 chr13 25960336 25960648 -93784250 + AluJo SINE Alu 4 306 -6 383 173 12 0 chr13 25960648 25960729 -93784169 + (TA)n Simple_repeat Simple_repeat 1 82 0 243 0 0 0 chr13 25960732 25960759 -93784139 + (CA)n Simple_repeat Simple_repeat 2 28 0 375 113 0 0 chr13 25961549 25961611 -93783287 + (TG)n Simple_repeat Simple_repeat 1 62 0 288 0 0 0 chr13 25961701 25961733 -93783165 + (TG)n Simple_repeat Simple_repeat 1 32 0 1487 249 116 2 chr13 25961808 25962345 -93782553 + L1MC4 LINE L1 6463 7060 -982 1465 247 87 35 chr13 25962371 25962535 -93782363 + L1MC4 LINE L1 7238 7392 -650 2077 186 118 33 chr13 25962535 25962588 -93782310 + MER68 LTR ERV1 2 49 -513 2270 70 17 7 chr13 25962588 25962889 -93782009 + AluY SINE Alu 1 304 -7 2077 186 118 33 chr13 25962889 25963352 -93781546 + MER68 LTR ERV1 49 562 0 1465 247 87 35 chr13 25963352 25963819 -93781079 + L1MC4 LINE L1 7392 7902 -140 257 130 56 0 chr13 25963822 25963876 -93781022 + L1MC4 LINE L1 7986 8042 0 411 319 141 4 chr13 25966752 25966993 -93777905 - L2 LINE L2 -1026 2288 2015 3440 188 22 39 chr13 25967295 25968075 -93776823 + L1MC2 LINE L1 4409 5151 -1193 2103 95 42 0 chr13 25968075 25968358 -93776540 + AluSp SINE Alu 1 295 -18 3440 188 22 39 chr13 25968358 25969152 -93775746 + L1MC2 LINE L1 5151 5957 -387 979 228 98 70 chr13 25969218 25969382 -93775516 + L1MC4 LINE L1 7177 7335 -707 1629 192 10 3 chr13 25969382 25969674 -93775224 + AluJo SINE Alu 1 294 -18 979 228 98 70 chr13 25969674 25969991 -93774907 + L1MC4 LINE L1 7335 7671 -371 1638 167 0 26 chr13 25970026 25970295 -93774603 + AluJo SINE Alu 1 262 -50 432 313 24 24 chr13 25971375 25971539 -93773359 - MER5B DNA MER1_type -22 167 4 208 239 43 0 chr13 25971549 25971595 -93773303 + L3 LINE CR1 1528 1575 -2 441 230 186 6 chr13 25971709 25971870 -93773028 - MIR SINE MIR -49 213 24 2130 117 10 3 chr13 25972345 25972645 -93772253 + AluSq SINE Alu 1 302 -11 518 301 11 27 chr13 25972719 25972902 -93771996 + MIR SINE MIR 21 200 -62 1057 111 26 214 chr13 25972962 25973145 -93771753 - Tigger4(Zombi) DNA MER2_type 0 2731 2572 408 52 0 0 chr13 25973145 25973203 -93771695 - AluSp/q SINE Alu -12 301 244 1057 111 26 214 chr13 25973203 25973303 -93771595 - Tigger4(Zombi) DNA MER2_type -159 2572 2455 376 315 151 21 chr13 25973510 25974079 -93770819 + L1MC4a LINE L1 5255 5897 -1911 957 118 0 0 chr13 25974112 25974239 -93770659 + AluSq/x SINE Alu 1 127 -186 497 148 0 12 chr13 25974516 25974597 -93770301 - FLAM_A SINE Alu -14 128 49 21 0 0 0 chr13 25976490 25976511 -93768387 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr13 25976599 25976623 -93768275 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 620 234 8 8 chr13 25976623 25976747 -93768151 - L2 LINE L2 -13 3259 3136 186 347 160 0 chr13 25977079 25977154 -93767744 + L2 LINE L2 3196 3282 -31 288 0 0 0 chr13 25977172 25977204 -93767694 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 506 291 243 8 chr13 25977476 25977908 -93766990 + L2 LINE L2 2597 3129 -184 228 250 262 0 chr13 25977937 25978021 -93766877 + L2 LINE L2 3136 3241 -31 207 0 0 0 chr13 25978768 25978791 -93766107 + (TAA)n Simple_repeat Simple_repeat 2 24 0 809 138 39 15 chr13 25978791 25978921 -93765977 + FLAM_C SINE Alu 1 133 0 189 74 0 0 chr13 25978922 25978949 -93765949 + (GA)n Simple_repeat Simple_repeat 2 28 0 1818 170 14 3 chr13 25979202 25979491 -93765407 - AluJo SINE Alu -20 292 1 419 252 123 22 chr13 25980128 25980303 -93764595 + MIR SINE MIR 3 191 -71 238 339 91 25 chr13 25980423 25980544 -93764354 + MIR SINE MIR 83 211 -51 235 348 143 27 chr13 25980714 25980826 -93764072 + L2 LINE L2 3132 3256 -16 244 241 9 45 chr13 25981711 25981823 -93763075 + L1MC4a LINE L1 5794 5901 -1907 21 0 0 0 chr13 25981860 25981881 -93763017 + AT_rich Low_complexity Low_complexity 1 21 0 304 370 123 24 chr13 25982013 25982203 -93762695 + L1MC4a LINE L1 6179 6349 -1459 2259 136 0 0 chr13 25982203 25982511 -93762387 + AluSx SINE Alu 1 308 -4 304 370 123 24 chr13 25982511 25982701 -93762197 + L1MC4a LINE L1 6349 6597 -1211 431 275 38 7 chr13 25982702 25982892 -93762006 + L1MC5 LINE L1 6660 6788 -1173 6872 31 0 0 chr13 25982897 25983707 -93761191 + L1PA3 LINE L1 5346 6155 0 1695 153 69 4 chr13 25983835 25984109 -93760789 + AluSx SINE Alu 1 292 -20 540 216 92 133 chr13 25984188 25984796 -93760102 + L1MC5 LINE L1 7014 7573 -388 2142 79 24 10 chr13 25984796 25985087 -93759811 + AluSg SINE Alu 1 295 -15 540 216 92 133 chr13 25985087 25985395 -93759503 + L1MC5 LINE L1 7573 7892 -69 187 279 93 12 chr13 25985673 25985759 -93759139 - MIR3 SINE MIR -54 154 62 598 231 112 24 chr13 25986928 25987179 -93757719 - Charlie7 DNA MER1_type -230 2382 2110 677 279 88 0 chr13 25987222 25987426 -93757472 + MIR SINE MIR 6 227 -35 1538 163 27 27 chr13 25987447 25987747 -93757151 - AluJo SINE Alu -12 300 1 232 253 267 9 chr13 25987771 25987996 -93756902 - Charlie7 DNA MER1_type -2239 373 91 1115 133 8 113 chr13 25988104 25988386 -93756512 + AluJo SINE Alu 86 312 0 1027 163 17 22 chr13 25989850 25990028 -93754870 + AluJo SINE Alu 82 258 -54 2472 70 3 0 chr13 25991098 25991400 -93753498 + AluY SINE Alu 1 303 -8 1447 140 42 114 chr13 25991700 25992058 -93752840 + Tigger3(Golem) DNA MER2_type 2 3014 -15 324 306 142 19 chr13 25992392 25992653 -93752245 + L1ME3A LINE L1 5592 5884 -286 2039 142 10 0 chr13 25994564 25994860 -93750038 + AluSx SINE Alu 1 299 -13 1549 170 3 47 chr13 25994870 25995170 -93749728 + AluJb SINE Alu 1 287 -25 1896 118 21 21 chr13 25995174 25995449 -93749449 + AluSx SINE Alu 7 284 -28 180 0 0 0 chr13 25995449 25995469 -93749429 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1896 118 21 21 chr13 25995469 25995482 -93749416 + AluSx SINE Alu 283 295 -17 597 284 97 23 chr13 25996212 25996388 -93748510 - MIR SINE MIR -71 191 3 234 204 0 0 chr13 25996500 25996544 -93748354 + MIR SINE MIR 110 153 -109 2477 58 0 13 chr13 25996645 25996956 -93747942 + AluY SINE Alu 1 307 -4 311 318 164 25 chr13 25997004 25997205 -93747693 - MIR SINE MIR -13 249 21 264 167 0 0 chr13 25997356 25997404 -93747494 + T-rich Low_complexity Low_complexity 1 48 0 771 58 10 19 chr13 25997419 25997522 -93747376 - AluSg/x SINE Alu -144 168 67 2213 97 7 3 chr13 25998436 25998725 -93746173 + AluSg SINE Alu 1 290 -20 2031 153 0 13 chr13 25999792 26000099 -93744799 - AluJb SINE Alu -9 303 1 190 211 88 0 chr13 26000821 26000878 -93744020 + MIR SINE MIR 122 183 -79 661 198 0 0 chr13 26000943 26001064 -93743834 + FLAM_A SINE Alu 20 140 -2 2384 103 0 3 chr13 26001923 26002235 -93742663 - AluSx SINE Alu -1 311 1 276 292 80 0 chr13 26002239 26002352 -93742546 + MIR SINE MIR 84 205 -57 2268 154 19 58 chr13 26002483 26002886 -93742012 + L1MB3 LINE L1 5712 6096 -87 2366 94 3 0 chr13 26002886 26003184 -93741714 + AluSp SINE Alu 1 299 -14 2268 154 19 58 chr13 26003184 26003246 -93741652 + L1MB3 LINE L1 6096 6159 -24 1448 157 4 4 chr13 26003400 26003636 -93741262 - MER46A DNA MER2_type 0 236 1 277 141 110 17 chr13 26003761 26003845 -93741053 + L1ME4a LINE L1 5730 5820 -513 1793 143 38 3 chr13 26003854 26004147 -93740751 + AluJb SINE Alu 1 303 -9 308 306 48 8 chr13 26004281 26004405 -93740493 + L1ME4a LINE L1 5992 6120 -1 3012 171 38 77 chr13 26004949 26005003 -93739895 + L1MB4 LINE L1 5417 5472 -708 189 0 0 0 chr13 26005003 26005024 -93739874 + (TA)n Simple_repeat Simple_repeat 2 22 0 3012 171 38 77 chr13 26005024 26005394 -93739504 + L1MB4 LINE L1 5472 5798 -382 586 197 128 0 chr13 26005394 26005511 -93739387 + FLAM_A SINE Alu 1 132 -1 3012 171 38 77 chr13 26005511 26005880 -93739018 + L1MB4 LINE L1 5798 6180 0 499 197 47 39 chr13 26006924 26007051 -93737847 - MER94 DNA DNA -1 133 6 192 294 29 0 chr13 26007068 26007136 -93737762 + L2 LINE L2 2977 3046 -226 2025 144 7 0 chr13 26007336 26007634 -93737264 + AluSx SINE Alu 1 300 -12 2319 131 0 0 chr13 26007652 26007964 -93736934 + AluSx SINE Alu 1 312 0 299 224 165 12 chr13 26007969 26008054 -93736844 - L2 LINE L2 -34 3279 3182 1099 175 15 5 chr13 26008239 26008439 -93736459 + AluJo SINE Alu 1 202 -110 21 0 0 0 chr13 26008588 26008609 -93736289 + AT_rich Low_complexity Low_complexity 1 21 0 2082 114 0 72 chr13 26008618 26008772 -93736126 + AluSx SINE Alu 1 120 -192 1761 101 136 19 chr13 26008772 26009030 -93735868 + AluSg1 SINE Alu 1 288 -21 2082 114 0 72 chr13 26009030 26009208 -93735690 + AluSx SINE Alu 120 309 -3 209 224 0 20 chr13 26009751 26009800 -93735098 + T-rich Low_complexity Low_complexity 3 50 0 428 191 27 82 chr13 26009886 26009931 -93734967 - L1ME2 LINE L1 -16 6148 6102 2169 132 3 6 chr13 26009931 26010242 -93734656 + AluSx SINE Alu 1 310 -2 1932 172 3 0 chr13 26010242 26010545 -93734353 + AluSx SINE Alu 1 304 -8 428 191 27 82 chr13 26010545 26010645 -93734253 - L1ME2 LINE L1 -60 6104 6010 * 547 246 112 17 chr13 26010636 26010868 -93734030 - L1MC5 LINE L1 -103 7858 7605 2295 114 0 10 chr13 26011006 26011314 -93733584 - AluSx SINE Alu -7 305 1 366 306 9 0 chr13 26011521 26011632 -93733266 - L2 LINE L2 -3 3269 3158 819 176 7 0 chr13 26011813 26011955 -93732943 + FLAM_C SINE Alu 1 143 0 429 184 132 15 chr13 26012356 26012492 -93732406 - L1ME4a LINE L1 -15 6106 5955 2308 81 0 3 chr13 26012889 26013203 -93731695 - AluY SINE Alu 0 313 1 2187 122 3 0 chr13 26013203 26013498 -93731400 - AluSx SINE Alu -16 296 1 661 308 53 3 chr13 26013510 26013828 -93731070 - L1ME4a LINE L1 -304 5817 5484 586 260 19 0 chr13 26013856 26014010 -93730888 + L1M4 LINE L1 3968 4124 -2022 2316 101 3 0 chr13 26014167 26014473 -93730425 - AluSc SINE Alu -2 307 1 845 152 8 0 chr13 26015187 26015319 -93729579 - AluSq/x SINE Alu -179 133 1 288 0 0 0 chr13 26015375 26015407 -93729491 + (TA)n Simple_repeat Simple_repeat 2 33 0 1705 172 3 36 chr13 26015407 26015600 -93729298 - AluJb SINE Alu -14 298 117 2335 92 60 17 chr13 26015600 26015949 -93728949 + THE1B LTR MaLR 1 364 0 1705 172 3 36 chr13 26015949 26016063 -93728835 - AluJb SINE Alu -195 117 1 1738 128 15 107 chr13 26016453 26016789 -93728109 + AluJb SINE Alu 1 305 -7 652 248 72 36 chr13 26017076 26017298 -93727600 + MIR SINE MIR 1 230 -32 1108 245 114 63 chr13 26017499 26017752 -93727146 - MLT1J LTR MaLR -37 474 189 1610 192 0 10 chr13 26017752 26018049 -93726849 + AluJo SINE Alu 12 305 -7 1108 245 114 63 chr13 26018049 26018224 -93726674 - MLT1J LTR MaLR -322 189 24 370 303 46 17 chr13 26018468 26018643 -93726255 + L3b LINE CR1 1103 1282 -301 1588 141 0 27 chr13 26019808 26020064 -93724834 - AluJb SINE Alu 0 312 64 1820 145 0 17 chr13 26020070 26020359 -93724539 + AluJo SINE Alu 15 298 -14 1908 129 43 17 chr13 26020410 26020712 -93724186 - AluSx SINE Alu -2 310 1 1147 293 107 30 chr13 26020713 26021508 -93723390 - HAL1 LINE L1 -639 1868 1013 1351 174 125 21 chr13 26021674 26021955 -93722943 + AluSg SINE Alu 1 310 0 2382 188 66 19 chr13 26021964 26022005 -93722893 + MLT2B3 LTR ERVL 13 51 -503 2162 112 7 7 chr13 26022005 26022310 -93722588 + AluSx SINE Alu 1 305 -7 2382 188 66 19 chr13 26022310 26022753 -93722145 + MLT2B3 LTR ERVL 51 520 -34 300 23 116 0 chr13 26022795 26022838 -93722060 + MLT2B3 LTR ERVL 473 520 0 1674 255 91 68 chr13 26022915 26023323 -93721575 + ERVL LTR ERVL 2535 2967 -2797 1915 143 7 16 chr13 26023323 26023630 -93721268 + AluJo SINE Alu 1 304 -8 1674 255 91 68 chr13 26023630 26023924 -93720974 + ERVL LTR ERVL 2967 3253 -2511 1255 180 72 73 chr13 26024122 26024550 -93720348 - MER39 LTR ERV1 -23 684 196 877 318 74 27 chr13 26024611 26025124 -93719774 + ERVL LTR ERVL 3464 4000 -1654 1410 186 107 51 chr13 26025169 26025524 -93719374 - MLT1B LTR MaLR -15 375 1 2397 290 52 34 chr13 26025524 26026074 -93718824 + ERVL LTR ERVL 4070 4608 -1156 2206 104 0 0 chr13 26026074 26026352 -93718546 + AluSg SINE Alu 1 278 -32 189 0 0 0 chr13 26026352 26026373 -93718525 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2397 290 52 34 chr13 26026373 26026774 -93718124 + ERVL LTR ERVL 4607 5040 -724 763 261 159 13 chr13 26027299 26027652 -93717246 + LTR33 LTR ERVL 3 452 -69 1081 121 0 0 chr13 26027657 26027806 -93717092 - FRAM SINE Alu -9 167 19 281 269 0 0 chr13 26027834 26027901 -93716997 + LTR33 LTR ERVL 455 521 0 626 200 51 40 chr13 26028583 26028758 -93716140 + L1MC5 LINE L1 7346 7522 -439 2132 120 0 10 chr13 26028758 26029058 -93715840 + AluSq SINE Alu 1 297 -16 348 272 87 0 chr13 26029059 26029184 -93715714 - MER5B DNA MER1_type -49 130 4 2082 104 54 0 chr13 26029596 26029874 -93715024 + AluSx SINE Alu 1 293 -19 238 342 45 0 chr13 26030027 26030138 -93714760 - L1ME LINE L1 -458 5712 5597 1332 282 42 46 chr13 26030237 26030833 -93714065 + L1MB3 LINE L1 5 600 -5942 2621 131 11 47 chr13 26030833 26031277 -93713621 + MSTC LTR MaLR 1 428 0 1332 282 42 46 chr13 26031277 26031293 -93713605 + L1MB3 LINE L1 600 615 -5927 1882 139 44 17 chr13 26031296 26031617 -93713281 + AluSg SINE Alu 1 310 0 1246 132 0 0 chr13 26031617 26031791 -93713107 + AluSg/x SINE Alu 134 307 -5 2597 203 45 32 chr13 26031795 26032134 -93712764 + L1MB3 LINE L1 1526 1859 -4787 1595 183 35 7 chr13 26032134 26032419 -93712479 - AluJb SINE Alu -19 293 1 2597 203 45 32 chr13 26032419 26032930 -93711968 + L1MB3 LINE L1 1859 2479 -4167 675 181 51 0 chr13 26032948 26033086 -93711812 + FAM SINE Alu 18 162 -23 1700 176 23 142 chr13 26033086 26033181 -93711717 + L1MB3 LINE L1 5547 5652 -1020 2145 128 3 0 chr13 26033181 26033479 -93711419 + AluSx SINE Alu 3 301 -11 1700 176 23 142 chr13 26033479 26033865 -93711033 + L1MB3 LINE L1 5652 6082 -590 2011 142 27 0 chr13 26033865 26034161 -93710737 - AluY SINE Alu -7 304 1 1699 167 7 14 chr13 26034168 26034449 -93710449 - AluJb SINE Alu -21 291 13 1700 176 23 142 chr13 26034449 26034855 -93710043 + L1MB3 LINE L1 6088 6181 -491 1509 138 36 5 chr13 26034866 26035090 -93709808 + AluJb SINE Alu 1 231 -81 840 196 115 48 chr13 26035132 26035402 -93709496 + pTR5 LTR ERV1 741 1028 -1410 5095 95 84 28 chr13 26035480 26036262 -93708636 + LTR12 LTR ERV1 1 826 0 37925 82 7 9 chr13 26036262 26037524 -93707374 + HERV9 LTR ERV1 1 1265 -7134 333 68 0 0 chr13 26037524 26037568 -93707330 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 37925 82 7 9 chr13 26037568 26041261 -93703637 + HERV9 LTR ERV1 1265 4944 -3455 2396 174 130 70 chr13 26041262 26042093 -93702805 + Harlequin LTR ERV1 840 1720 -5176 * 4945 112 6 10 chr13 26042087 26043021 -93701877 + Harlequin LTR ERV1 504 8399 0 5341 94 24 65 chr13 26043100 26043961 -93700937 + LTR12 LTR ERV1 1 826 0 494 73 0 0 chr13 26043961 26044029 -93700869 + AluJb SINE Alu 238 305 -7 5736 123 12 25 chr13 26044038 26044797 -93700101 + L1PA15 LINE L1 4395 5162 -1003 2136 99 10 31 chr13 26044797 26045091 -93699807 + AluSq SINE Alu 1 288 -25 348 43 0 0 chr13 26045093 26045139 -93699759 + (CTAA)n Simple_repeat Simple_repeat 3 48 0 5736 123 12 25 chr13 26045139 26045470 -93699428 + L1PA15 LINE L1 5163 5497 -668 2076 151 3 0 chr13 26045470 26045781 -93699117 + AluSx SINE Alu 1 312 0 5736 123 12 25 chr13 26045781 26046467 -93698431 + L1PA15 LINE L1 5497 6163 -2 1991 147 31 8 chr13 26046467 26046821 -93698077 + L1MB3 LINE L1 6314 6681 0 267 356 0 0 chr13 26046870 26046988 -93697910 + MARNA DNA Mariner 426 543 -43 1434 148 113 14 chr13 26047060 26047344 -93697554 + L1MB5 LINE L1 5823 6134 -40 290 183 0 0 chr13 26047345 26047405 -93697493 - Alu SINE Alu -1 301 242 2211 180 72 40 chr13 26047411 26047883 -93697015 - LTR22 LTR ERVK -22 487 1 235 245 0 19 chr13 26047908 26047961 -93696937 - FRAM/FAM SINE Alu -122 44 1 1473 111 19 0 chr13 26048358 26048566 -93696332 + AluSg/x SINE Alu 81 292 -18 2368 101 0 0 chr13 26049197 26049494 -93695404 - AluSq SINE Alu -16 297 1 2147 106 28 0 chr13 26049495 26049778 -93695120 - AluSx SINE Alu -15 297 7 1223 201 98 56 chr13 26050070 26050479 -93694419 + L1MD2 LINE L1 5718 6143 -216 710 213 7 0 chr13 26050481 26050631 -93694267 + L1MD2 LINE L1 6195 6345 -14 21 0 0 0 chr13 26050637 26050658 -93694240 + AT_rich Low_complexity Low_complexity 1 21 0 4280 198 67 25 chr13 26051386 26052863 -93692035 - L1MB8 LINE L1 -1 6177 4764 1769 169 17 3 chr13 26052863 26053158 -93691740 + AluJb SINE Alu 1 299 -13 4280 198 67 25 chr13 26053158 26053419 -93691479 - L1MB8 LINE L1 -1414 4764 4515 2045 144 0 16 chr13 26053419 26053731 -93691167 - AluSg SINE Alu -3 307 1 4280 198 67 25 chr13 26053731 26053852 -93691046 - L1MB8 LINE L1 -1663 4515 4401 2362 89 0 32 chr13 26053852 26054168 -93690730 - AluY SINE Alu -5 306 1 4280 198 67 25 chr13 26054168 26054219 -93690679 - L1MB8 LINE L1 -1777 4401 4201 3019 157 113 36 chr13 26054234 26054870 -93690028 - LTR8 LTR ERV1 -5 686 2 4517 229 86 35 chr13 26054871 26055586 -93689312 - L1MB8 LINE L1 -1948 4198 3521 1708 164 31 11 chr13 26055586 26055872 -93689026 - AluJb SINE Alu -13 299 8 4517 229 86 35 chr13 26055872 26056317 -93688581 - L1MB8 LINE L1 -2625 3521 3100 1465 208 52 0 chr13 26056317 26056605 -93688293 - AluJb SINE Alu -9 303 1 4517 229 86 35 chr13 26056605 26056984 -93687914 - L1MB8 LINE L1 -3046 3100 2569 2182 124 0 0 chr13 26056984 26057282 -93687616 + AluSx SINE Alu 8 305 -7 4517 229 86 35 chr13 26057282 26057352 -93687546 - L1MB8 LINE L1 -3577 2569 2504 790 268 149 29 chr13 26057367 26057943 -93686955 + L2 LINE L2 2671 3313 0 275 216 165 41 chr13 26058154 26058251 -93686647 - L2 LINE L2 -1 3312 3204 1241 169 125 47 chr13 26058441 26058522 -93686376 - MER2 DNA MER2_type 0 344 271 2337 103 0 16 chr13 26058522 26058833 -93686065 + AluSx SINE Alu 1 306 -6 1241 169 125 47 chr13 26058833 26059070 -93685828 - MER2 DNA MER2_type -73 271 1 3369 171 40 149 chr13 26060081 26060702 -93684196 - Charlie1 DNA MER1_type -2 2759 2343 2457 82 3 0 chr13 26060702 26061006 -93683892 - AluSp SINE Alu -8 305 1 3369 171 40 149 chr13 26061006 26061643 -93683255 - Charlie1 DNA MER1_type -418 2343 1638 736 203 0 0 chr13 26061646 26061779 -93683119 + FLAM_A SINE Alu 1 133 0 410 212 44 53 chr13 26061796 26061909 -93682989 - Charlie1 DNA MER1_type -2641 120 9 274 294 94 39 chr13 26062328 26062508 -93682390 - MER117 DNA MER1_type 0 197 8 26 0 0 0 chr13 26063182 26063208 -93681690 + AT_rich Low_complexity Low_complexity 1 26 0 2103 133 20 0 chr13 26063265 26063567 -93681331 + AluSx SINE Alu 1 308 -4 244 294 79 40 chr13 26064392 26064518 -93680380 + L2 LINE L2 3179 3309 -4 293 244 0 73 chr13 26064763 26064813 -93680085 + L1ME3 LINE L1 5565 5608 -556 2097 132 11 36 chr13 26064813 26065177 -93679721 + THE1A LTR MaLR 1 355 0 293 244 0 73 chr13 26065177 26065208 -93679690 + L1ME3 LINE L1 5608 5640 -524 819 206 0 0 chr13 26065208 26065349 -93679549 + FRAM SINE Alu 1 140 -36 976 220 20 12 chr13 26065350 26065600 -93679298 + L1ME3 LINE L1 5724 5975 -187 694 190 0 0 chr13 26065602 26065718 -93679180 + FLAM_C SINE Alu 1 116 -17 255 270 16 0 chr13 26066085 26066148 -93678750 + HAL1 LINE L1 3 66 -2441 321 68 0 0 chr13 26066150 26066194 -93678704 + (TG)n Simple_repeat Simple_repeat 2 45 0 225 235 136 25 chr13 26066356 26066437 -93678461 + MIR SINE MIR 169 258 -4 513 232 175 6 chr13 26066780 26066957 -93677941 + L1MC4 LINE L1 7068 7274 -768 1253 228 31 98 chr13 26067007 26067224 -93677674 + L1MC4 LINE L1 7538 7768 -274 1785 157 18 0 chr13 26067224 26067504 -93677394 + AluJb SINE Alu 21 305 -7 1253 228 31 98 chr13 26067504 26067696 -93677202 + L1MC4 LINE L1 7768 7905 -137 893 173 49 27 chr13 26067696 26067881 -93677017 + MER5A DNA MER1_type 1 189 0 1253 228 31 98 chr13 26067881 26068009 -93676889 + L1MC4 LINE L1 7905 8040 -2 364 170 0 106 chr13 26068565 26068606 -93676292 + LTR8 LTR ERV1 1 28 -663 2201 123 0 10 chr13 26068606 26068915 -93675983 + AluSc SINE Alu 1 306 -3 364 170 0 106 chr13 26068915 26068967 -93675931 + LTR8 LTR ERV1 28 84 -607 1852 174 7 0 chr13 26069647 26069951 -93674947 - AluJb SINE Alu -5 307 2 1747 171 7 16 chr13 26069971 26070275 -93674623 + AluJo SINE Alu 1 301 -11 412 148 123 0 chr13 26070334 26070415 -93674483 + LTR64 LTR ERVK 455 545 -13 367 137 0 0 chr13 26070498 26070549 -93674349 + MER66A LTR ERV1 287 337 -141 534 322 167 11 chr13 26070574 26071040 -93673858 - L2 LINE L2 -960 2354 1816 2103 110 25 0 chr13 26071314 26071596 -93673302 + AluSx SINE Alu 1 289 -23 1309 146 108 54 chr13 26071683 26072140 -93672758 + LTR64 LTR ERVK 1 545 -13 202 296 45 34 chr13 26072140 26072228 -93672670 - L2 LINE L2 -2009 1305 1217 624 248 155 0 chr13 26072232 26072438 -93672460 - MER102a DNA MER1_type -1 329 92 219 300 113 52 chr13 26072532 26072615 -93672283 - L2 LINE L2 -2127 1187 1110 2235 100 0 10 chr13 26072615 26072916 -93671982 + AluSq SINE Alu 1 298 -15 219 300 113 52 chr13 26072916 26073062 -93671836 - L2 LINE L2 -2204 1110 944 2178 132 64 13 chr13 26073321 26073714 -93671184 + L1MC3 LINE L1 7371 7783 -2 256 281 125 8 chr13 26073995 26074123 -93670775 - L1ME LINE L1 -334 5828 5686 21 0 0 0 chr13 26074711 26074732 -93670166 + GC_rich Low_complexity Low_complexity 1 21 0 209 278 290 11 chr13 26076176 26076352 -93668546 - MIR SINE MIR -16 246 22 1924 109 39 14 chr13 26077517 26077801 -93667097 - AluSp SINE Alu -10 303 13 963 79 43 22 chr13 26077806 26077945 -93666953 - AluSp SINE Alu -171 142 1 2274 94 0 3 chr13 26078697 26078996 -93665902 - AluY SINE Alu -13 298 1 2078 113 18 0 chr13 26079939 26080222 -93664676 - AluSg SINE Alu -20 290 3 419 223 77 15 chr13 26080420 26080550 -93664348 - MLT1A1 LTR MaLR 0 365 228 2771 202 41 41 chr13 26080600 26080750 -93664148 - L1MD1 LINE L1 0 6242 6093 1863 135 25 0 chr13 26080750 26081031 -93663867 + AluSx SINE Alu 4 291 -21 2771 202 41 41 chr13 26081031 26081609 -93663289 - L1MD1 LINE L1 -148 6094 5514 312 142 37 0 chr13 26081610 26081671 -93663227 - MLT1A1 LTR MaLR -365 61 1 860 193 13 0 chr13 26081875 26082025 -93662873 + FRAM SINE Alu 3 154 -12 226 253 77 11 chr13 26082368 26082459 -93662439 + MIR SINE MIR 114 210 -52 306 352 16 8 chr13 26082822 26082947 -93661951 - MIR SINE MIR -67 141 16 476 132 44 88 chr13 26083046 26083160 -93661738 - L1MA10 LINE L1 0 6334 6226 235 328 34 25 chr13 26083268 26083387 -93661511 + L2 LINE L2 2934 3053 -219 185 129 0 0 chr13 26083590 26083621 -93661277 + MIR SINE MIR 220 250 -12 228 349 77 6 chr13 26084244 26084413 -93660485 - L1ME LINE L1 -2183 5625 5445 262 175 461 13 chr13 26084433 26084587 -93660311 + L2 LINE L2 2008 2230 -1084 458 340 13 0 chr13 26084587 26084743 -93660155 + L2 LINE L2 2785 2942 -372 1851 140 17 7 chr13 26085005 26085297 -93659601 - AluJb SINE Alu -17 295 1 1917 89 12 8 chr13 26085510 26085757 -93659141 - AluSq SINE Alu -65 248 1 845 219 27 16 chr13 26086154 26086228 -93658670 + MER5A DNA MER1_type 1 73 -116 2625 36 3 7 chr13 26086228 26086532 -93658366 + AluY SINE Alu 1 303 -8 845 219 27 16 chr13 26086532 26086644 -93658254 + MER5A DNA MER1_type 73 189 0 913 171 63 0 chr13 26087860 26088018 -93656880 - FRAM SINE Alu -8 168 1 1846 120 48 42 chr13 26088082 26088282 -93656616 - MER2 DNA MER2_type -10 335 131 2225 113 0 0 chr13 26088282 26088574 -93656324 + AluSx SINE Alu 1 292 -20 1846 120 48 42 chr13 26088574 26088706 -93656192 - MER2 DNA MER2_type -214 131 1 872 176 28 33 chr13 26089091 26089273 -93655625 - AluJb SINE Alu -3 309 129 22 0 0 0 chr13 26089403 26089425 -93655473 + AT_rich Low_complexity Low_complexity 1 22 0 217 298 0 18 chr13 26089515 26089572 -93655326 + polypyrimidine Low_complexity Low_complexity 3 58 0 456 127 14 0 chr13 26089591 26089662 -93655236 - AluJ/FLAM SINE Alu -238 74 3 391 267 142 33 chr13 26090940 26091180 -93653718 + MLT1L LTR MaLR 127 392 -223 225 301 126 54 chr13 26091556 26091795 -93653103 - L2 LINE L2 -2 3270 3015 2848 10 0 0 chr13 26091859 26092163 -93652735 + AluYa5 SINE Alu 1 304 -7 189 290 100 0 chr13 26092204 26092304 -93652594 - L2 LINE L2 -785 2529 2420 1220 218 14 18 chr13 26092325 26092605 -93652293 + MLT1H LTR MaLR 13 291 -258 295 178 92 0 chr13 26092728 26092803 -93652095 + MLT1H LTR MaLR 418 549 0 2488 76 0 3 chr13 26093358 26093672 -93651226 - AluSq SINE Alu 0 313 1 216 0 0 0 chr13 26095349 26095373 -93649525 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1866 92 64 35 chr13 26095424 26095585 -93649313 - AluSq SINE Alu -23 290 116 195 42 0 0 chr13 26095585 26095609 -93649289 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1866 92 64 35 chr13 26095609 26095729 -93649169 - AluSq SINE Alu -197 116 1 270 0 0 0 chr13 26096987 26097017 -93647881 + (T)n Simple_repeat Simple_repeat 1 30 0 206 372 18 30 chr13 26097817 26097981 -93646917 + L2 LINE L2 2897 3058 -214 242 286 68 38 chr13 26100409 26100542 -93644356 + L2 LINE L2 3172 3308 -5 3565 70 2 5 chr13 26100599 26101044 -93643854 - MLT2A1 LTR ERVL 0 444 1 1976 147 0 13 chr13 26101123 26101435 -93643463 - AluJb SINE Alu -4 308 1 217 291 164 18 chr13 26101548 26101658 -93643240 - L2 LINE L2 -3 3269 3144 206 244 63 58 chr13 26102096 26102232 -93642666 + MIR SINE MIR 20 194 -68 661 198 0 0 chr13 26102279 26102400 -93642498 + FLAM_A SINE Alu 20 140 -2 4066 129 80 49 chr13 26102686 26103447 -93641451 + LTR1 LTR ERV1 1 785 0 325 211 211 32 chr13 26103485 26103580 -93641318 - MIR SINE MIR -61 147 36 191 200 25 0 chr13 26103655 26103695 -93641203 + MER5A DNA MER1_type 50 90 -99 310 323 32 38 chr13 26104611 26104769 -93640129 - L1MC4 LINE L1 -1273 6769 6613 1605 200 54 15 chr13 26104779 26105158 -93639740 - MLT2D LTR ERVL -35 485 1 724 268 11 6 chr13 26105168 26105347 -93639551 - MIR SINE MIR -54 208 29 471 193 43 43 chr13 26105458 26105598 -93639300 - LTR67 LTR ERVL -1 556 417 1644 204 92 54 chr13 26105908 26106353 -93638545 + MLT1C LTR MaLR 6 467 0 231 218 188 38 chr13 26106618 26106751 -93638147 - MLT1J LTR MaLR -147 364 212 2227 74 3 0 chr13 26106752 26107037 -93637861 - AluSx SINE Alu -23 289 4 312 301 0 0 chr13 26107756 26107829 -93637069 + MIR3 SINE MIR 88 160 -48 2059 94 3 20 chr13 26107900 26108199 -93636699 + AluSx SINE Alu 1 294 -18 827 263 20 18 chr13 26108245 26108490 -93636408 - MIR SINE MIR 0 262 18 1911 95 91 0 chr13 26108497 26108771 -93636127 - AluSx SINE Alu -13 299 1 2074 113 0 3 chr13 26109354 26109654 -93635244 + AluSx SINE Alu 1 299 -13 2306 72 0 0 chr13 26109655 26109980 -93634918 + AluY SINE Alu 1 325 0 1726 167 3 0 chr13 26110532 26110834 -93634064 - AluJo SINE Alu 0 304 2 183 80 0 0 chr13 26110904 26110929 -93633969 + (CA)n Simple_repeat Simple_repeat 2 26 0 328 250 22 43 chr13 26110929 26111021 -93633877 - L1MC4 LINE L1 -1339 6703 6614 * 350 192 0 91 chr13 26110958 26111091 -93633807 + L1MC4 LINE L1 6614 6703 -1339 350 192 0 91 chr13 26111094 26111193 -93633705 + L1MC4 LINE L1 6614 6703 -1339 350 192 0 91 chr13 26111196 26111329 -93633569 + L1MC4 LINE L1 6614 6703 -1339 376 218 40 50 chr13 26111343 26111444 -93633454 - L1MC4 LINE L1 -1339 6703 6604 1082 139 92 0 chr13 26111812 26111985 -93632913 + LTR45B LTR ERV1 3 191 -298 997 102 0 15 chr13 26111986 26112123 -93632775 + AluSq/x SINE Alu 1 135 -178 2029 118 0 20 chr13 26112123 26112427 -93632471 + AluSx SINE Alu 1 298 -14 585 235 53 15 chr13 26112428 26112654 -93632244 + LTR45B LTR ERV1 180 619 0 540 225 29 7 chr13 26112687 26112825 -93632073 - L1MD3 LINE L1 0 7995 7855 1262 163 12 33 chr13 26112833 26112966 -93631932 - MLT1D LTR MaLR 0 505 378 2045 141 0 0 chr13 26112966 26113278 -93631620 + AluSx SINE Alu 1 312 0 1262 163 12 33 chr13 26113278 26113384 -93631514 - MLT1D LTR MaLR -127 378 271 608 179 6 96 chr13 26113396 26113552 -93631346 - FLAM_A SINE Alu 0 142 1 1882 161 83 22 chr13 26113556 26113917 -93630981 - L1MC1 LINE L1 -8 6325 5943 2257 123 50 17 chr13 26114017 26114376 -93630522 - LTR45B LTR ERV1 -98 391 21 2179 93 7 10 chr13 26114378 26114679 -93630219 + AluSq SINE Alu 1 300 -13 2292 158 68 47 chr13 26114711 26115082 -93629816 - L1MB8 LINE L1 -231 5947 5561 2390 84 0 0 chr13 26115082 26115393 -93629505 - AluY SINE Alu 0 311 1 2292 158 68 47 chr13 26115393 26115533 -93629365 - L1MB8 LINE L1 -617 5561 5425 239 236 36 0 chr13 26115588 26115643 -93629255 - L1MC4 LINE L1 -380 7662 7606 1450 167 48 44 chr13 26115983 26116277 -93628621 + AluJb SINE Alu 1 295 -17 240 232 54 0 chr13 26117112 26117168 -93627730 + L2 LINE L2 3255 3313 0 2377 157 5 5 chr13 26117847 26118236 -93626662 + MLT1B LTR MaLR 1 389 -1 426 285 32 36 chr13 26118794 26118994 -93625904 - MIR SINE MIR -44 218 20 844 261 43 35 chr13 26119082 26119339 -93625559 - MIR SINE MIR -2 260 2 1640 207 28 14 chr13 26119418 26119780 -93625118 + MLT1A2 LTR MaLR 7 373 -1 661 266 91 37 chr13 26120353 26120589 -93624309 - MIR SINE MIR -10 252 3 232 237 145 13 chr13 26120619 26120695 -93624203 - L2 LINE L2 -1 3271 3186 1573 187 127 28 chr13 26120801 26121414 -93623484 + LTR48 LTR ERV1 4 787 0 1019 183 86 81 chr13 26122915 26123131 -93621767 - MER58D DNA MER1_type -2035 385 165 1681 153 0 81 chr13 26123131 26123464 -93621434 + AluJo SINE Alu 3 308 -4 1019 183 86 81 chr13 26123464 26123630 -93621268 - MER58D DNA MER1_type -2255 165 1 222 290 97 0 chr13 26123766 26123859 -93621039 - MIR SINE MIR -37 225 124 2037 112 0 3 chr13 26123943 26124263 -93620635 + AluSx SINE Alu 1 312 0 1592 168 0 67 chr13 26124558 26124744 -93620154 - AluJo SINE Alu -17 295 137 2248 99 0 0 chr13 26124744 26125037 -93619861 + AluSx SINE Alu 1 293 -19 1592 168 0 67 chr13 26125037 26125166 -93619732 - AluJo SINE Alu -175 137 1 1445 184 0 67 chr13 26125624 26125810 -93619088 - AluJo SINE Alu -17 295 137 2248 99 0 0 chr13 26125810 26126103 -93618795 + AluSx SINE Alu 1 293 -19 1445 184 0 67 chr13 26126103 26126232 -93618666 - AluJo SINE Alu -175 137 1 445 269 151 51 chr13 26126324 26126636 -93618262 + L1ME4a LINE L1 5779 6121 0 602 344 9 0 chr13 26127373 26127597 -93617301 + MARNA DNA Mariner 43 268 -318 2285 84 0 13 chr13 26127759 26128070 -93616828 - AluSc SINE Alu -2 307 1 1335 139 183 109 chr13 26128102 26128277 -93616621 - MLT2C2 LTR ERVL 0 464 303 2035 138 0 0 chr13 26128277 26128581 -93616317 - AluSx SINE Alu -8 304 1 1335 139 183 109 chr13 26128581 26128729 -93616169 - MLT2C2 LTR ERVL -161 303 167 1475 127 120 8 chr13 26128729 26128988 -93615910 - AluSg SINE Alu -22 288 1 1335 139 183 109 chr13 26128988 26129095 -93615803 - MLT2C2 LTR ERVL -297 167 1 2119 93 0 40 chr13 26129857 26130178 -93614720 - AluSx SINE Alu -4 308 1 268 191 0 29 chr13 26131744 26131812 -93613086 + L1MC2 LINE L1 6270 6335 -9 2588 16 0 10 chr13 26131826 26132131 -93612767 + AluY SINE Alu 1 302 -9 359 280 120 7 chr13 26132134 26132284 -93612614 - MLT1J LTR MaLR -102 409 243 535 258 104 28 chr13 26132312 26132494 -93612404 - MLT1J LTR MaLR -309 202 7 3170 136 75 84 chr13 26132944 26133725 -93611173 - LTR1 LTR ERV1 -1 784 11 1603 174 0 7 chr13 26134486 26134768 -93610130 - AluJb SINE Alu -20 292 13 241 143 0 0 chr13 26134768 26134803 -93610095 - AluJb SINE Alu -264 35 1 256 196 18 36 chr13 26134917 26134973 -93609925 - L2 LINE L2 -1 3271 3217 26 0 0 0 chr13 26136026 26136052 -93608846 + AT_rich Low_complexity Low_complexity 1 26 0 209 0 97 0 chr13 26136052 26136083 -93608815 + T-rich Low_complexity Low_complexity 5 38 0 802 169 6 25 chr13 26136087 26136247 -93608651 - FRAM SINE Alu 0 176 20 3547 167 27 6 chr13 26136263 26136899 -93607999 - L1MC1 LINE L1 0 6333 5685 1894 129 0 31 chr13 26136899 26137077 -93607821 - AluSx SINE Alu -5 307 142 2053 118 3 10 chr13 26137077 26137383 -93607515 - AluSx SINE Alu -8 304 1 1894 129 0 31 chr13 26137383 26137521 -93607377 - AluSx SINE Alu -170 142 1 3068 213 20 23 chr13 26137524 26138255 -93606643 - L1MC1 LINE L1 -840 5306 4578 667 251 126 27 chr13 26138255 26138538 -93606360 - L1ME LINE L1 -495 5659 5360 318 232 29 0 chr13 26138558 26138627 -93606271 + L1MC4 LINE L1 6648 6718 -1324 1426 157 11 45 chr13 26138638 26138905 -93605993 - AluJo SINE Alu -54 258 1 1043 181 0 19 chr13 26138937 26139142 -93605756 - AluJo SINE Alu -25 287 87 936 260 87 9 chr13 26139144 26139574 -93605324 - L1M4 LINE L1 -757 5389 4923 2291 72 7 10 chr13 26139574 26139881 -93605017 - AluSx SINE Alu -4 308 3 936 260 87 9 chr13 26139881 26139917 -93604981 - L1M4 LINE L1 -1223 4923 4891 249 188 0 42 chr13 26140279 26140327 -93604571 - 7SK RNA RNA -146 47 2 814 305 66 81 chr13 26140819 26141291 -93603607 + L3 LINE CR1 1108 1572 -5 460 254 0 58 chr13 26141562 26141619 -93603279 + L1ME3A LINE L1 5776 5835 -335 1561 181 16 29 chr13 26141619 26141934 -93602964 + AluJo SINE Alu 1 311 -1 460 254 0 58 chr13 26141934 26142081 -93602817 + L1ME3A LINE L1 5835 5968 -202 308 263 81 64 chr13 26142102 26142338 -93602560 + L1ME3A LINE L1 5931 6170 0 405 337 60 52 chr13 26142377 26142505 -93602393 + L1MEc LINE L1 1366 1491 -4905 2137 113 3 0 chr13 26142505 26142814 -93602084 + AluSq SINE Alu 1 310 -3 405 337 60 52 chr13 26142814 26143050 -93601848 + L1MEc LINE L1 1491 1733 -4663 705 278 11 40 chr13 26143050 26143327 -93601571 - AluJb SINE Alu -23 289 21 361 255 0 69 chr13 26143513 26143553 -93601345 + L1ME3A LINE L1 5794 5835 -335 1561 181 16 29 chr13 26143553 26143868 -93601030 + AluJo SINE Alu 1 311 -1 361 255 0 69 chr13 26143868 26144015 -93600883 + L1ME3A LINE L1 5835 5968 -202 308 263 81 64 chr13 26144036 26144272 -93600626 + L1ME3A LINE L1 5931 6170 0 2137 113 3 0 chr13 26144439 26144748 -93600150 + AluSq SINE Alu 1 310 -3 232 211 84 21 chr13 26144814 26144909 -93599989 + L1MCa LINE L1 1583 1683 -4743 1853 143 0 7 chr13 26144968 26145254 -93599644 - AluJb SINE Alu -8 304 21 1459 281 55 64 chr13 26145290 26145385 -93599513 - L2 LINE L2 -500 2814 2720 1718 161 0 23 chr13 26145385 26145689 -93599209 - AluJo SINE Alu -5 307 11 1459 281 55 64 chr13 26145689 26146276 -93598622 - L2 LINE L2 -594 2720 2137 917 161 32 16 chr13 26146276 26146462 -93598436 + MER53 DNA DNA 1 189 0 1459 281 55 64 chr13 26146462 26146528 -93598370 - L2 LINE L2 -1177 2137 2072 1267 212 71 163 chr13 26146532 26147169 -93597729 - MLT1G3 LTR MaLR 0 530 1 259 274 98 0 chr13 26147169 26147271 -93597627 - L2 LINE L2 -1245 2069 1958 229 316 86 17 chr13 26148508 26148625 -93596273 - L2 LINE L2 -12 3260 3136 2594 118 6 3 chr13 26148743 26149106 -93595792 - THE1B LTR MaLR 0 364 1 2076 113 14 0 chr13 26149764 26150055 -93594843 - AluSx SINE Alu -17 295 1 3232 134 19 2 chr13 26150087 26150642 -93594256 + L1MC1 LINE L1 5187 5747 -586 1593 125 31 4 chr13 26150642 26150894 -93594004 + L1MC1 LINE L1 6053 6315 -18 3408 179 119 25 chr13 26151003 26151141 -93593757 - Tigger3b DNA MER2_type -1801 1227 1103 5620 134 28 9 chr13 26151141 26152044 -93592854 - MER49 LTR ERV1 -1 922 3 3408 179 119 25 chr13 26152044 26152790 -93592108 - Tigger3b DNA MER2_type -1925 1103 260 498 235 0 0 chr13 26152809 26152911 -93591987 - Tigger3b DNA MER2_type -1129 102 1 520 287 108 84 chr13 26152918 26152943 -93591955 - L1MC4 LINE L1 -140 7902 7879 4403 94 24 0 chr13 26152943 26153562 -93591336 + L1PA10 LINE L1 5535 6168 0 520 287 108 84 chr13 26153562 26153828 -93591070 - L1MC4 LINE L1 -163 7879 7599 1937 137 22 0 chr13 26153828 26154141 -93590757 + AluJb SINE Alu 1 319 0 520 287 108 84 chr13 26154141 26154181 -93590717 - L1MC4 LINE L1 -443 7599 7561 669 191 43 87 chr13 26154188 26154418 -93590480 - L1ME1 LINE L1 -1 6163 5944 391 269 90 25 chr13 26154390 26154591 -93590307 - L1MC5 LINE L1 -475 7486 7273 * 180 0 0 0 chr13 26154697 26154717 -93590181 + (T)n Simple_repeat Simple_repeat 1 20 0 279 237 66 0 chr13 26154871 26154947 -93589951 + L1MC4 LINE L1 7797 7877 -165 * 360 264 75 35 chr13 26154931 26155132 -93589766 - L1MC5 LINE L1 -728 7233 7025 2289 86 0 0 chr13 26155171 26155450 -93589448 + AluSg SINE Alu 1 279 -31 200 33 0 33 chr13 26155454 26155484 -93589414 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 471 235 17 42 chr13 26155706 26155825 -93589073 + MIR SINE MIR 28 143 -119 209 105 0 26 chr13 26156568 26156606 -93588292 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1188 68 11 6 chr13 26156619 26156796 -93588102 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2253 113 0 3 chr13 26156808 26157119 -93587779 - AluSx SINE Alu -2 310 1 1845 171 36 6 chr13 26157928 26158261 -93586637 - MER2 DNA MER2_type 0 344 2 414 0 0 0 chr13 26158579 26158625 -93586273 + (TG)n Simple_repeat Simple_repeat 2 47 0 805 223 29 11 chr13 26158888 26159063 -93585835 - MER5B DNA MER1_type 0 178 1 845 162 0 29 chr13 26159115 26159342 -93585556 + FLAM_C SINE Alu 1 223 0 1998 130 55 0 chr13 26159342 26159634 -93585264 + AluSx SINE Alu 1 308 -4 302 273 73 47 chr13 26159668 26159818 -93585080 - L1MCa LINE L1 -4266 2160 2007 306 73 0 0 chr13 26159918 26159959 -93584939 + (TA)n Simple_repeat Simple_repeat 1 41 0 2357 75 0 32 chr13 26160017 26160325 -93584573 + AluY SINE Alu 1 298 -13 1833 157 13 13 chr13 26160558 26160858 -93584040 + AluJo SINE Alu 1 300 -12 244 323 172 0 chr13 26162967 26163066 -93581832 + L2 LINE L2 3156 3271 -1 182 97 161 0 chr13 26163653 26163684 -93581214 + L3b LINE CR1 1372 1407 -176 204 174 43 0 chr13 26164595 26164641 -93580257 + (CA)n Simple_repeat Simple_repeat 1 48 0 341 164 38 25 chr13 26164653 26164812 -93580086 + (CA)n Simple_repeat Simple_repeat 1 161 0 346 183 49 28 chr13 26164825 26164967 -93579931 + (CA)n Simple_repeat Simple_repeat 1 145 0 1826 75 4 0 chr13 26165018 26165245 -93579653 + AluSq SINE Alu 85 312 -1 288 53 0 0 chr13 26165378 26165416 -93579482 + (TG)n Simple_repeat Simple_repeat 1 38 0 210 102 34 51 chr13 26165680 26165739 -93579159 + (CACAC)n Simple_repeat Simple_repeat 1 58 0 1644 96 36 0 chr13 26165787 26166007 -93578891 + AluSg/x SINE Alu 83 310 0 21 36 0 0 chr13 26166217 26166245 -93578653 + AT_rich Low_complexity Low_complexity 1 28 0 293 271 188 0 chr13 26166270 26166355 -93578543 + MIR SINE MIR 49 149 -113 873 101 0 0 chr13 26166375 26166494 -93578404 - AluSg/x SINE Alu 0 309 191 2240 116 3 0 chr13 26166833 26167127 -93577771 + AluSx SINE Alu 2 296 -16 366 316 112 51 chr13 26167359 26167751 -93577147 - L2 LINE L2 -638 2676 2261 2517 59 7 0 chr13 26167786 26168091 -93576807 + AluY SINE Alu 1 307 -4 1271 223 103 0 chr13 26168122 26168423 -93576475 - MER7A DNA MER2_type -3 343 14 264 263 75 0 chr13 26169042 26169122 -93575776 - MER96 DNA MER1_type? -89 86 1 187 282 14 42 chr13 26169122 26169193 -93575705 - MIR3 SINE MIR -134 74 6 285 305 158 45 chr13 26169209 26169455 -93575443 + L2 LINE L2 2999 3272 0 2420 155 14 34 chr13 26169937 26170255 -93574643 - L1PA16 LINE L1 -21 6145 5837 1991 120 33 40 chr13 26170255 26170554 -93574344 + AluSx SINE Alu 1 297 -15 2420 155 14 34 chr13 26170554 26170681 -93574217 - L1PA16 LINE L1 -329 5837 5709 500 17 0 0 chr13 26170748 26170806 -93574092 - U6 snRNA snRNA -43 64 7 1395 260 60 75 chr13 26171423 26171652 -93573246 - L1MC4 LINE L1 0 8042 7811 1934 116 191 8 chr13 26171652 26171691 -93573207 - MSTA LTR MaLR -1 427 396 1742 112 0 0 chr13 26171691 26171914 -93572984 + AluSx SINE Alu 1 223 -89 1934 116 191 8 chr13 26171914 26172235 -93572663 - MSTA LTR MaLR -32 396 1 1395 260 60 75 chr13 26172235 26172297 -93572601 - L1MC4 LINE L1 -231 7811 7750 744 163 8 8 chr13 26172297 26172420 -93572478 - FLAM_A SINE Alu -9 124 2 1395 260 60 75 chr13 26172420 26172865 -93572033 - L1MC4 LINE L1 -292 7750 7316 1856 173 7 3 chr13 26172878 26173173 -93571725 - AluJo SINE Alu -16 296 1 291 71 0 0 chr13 26173227 26173269 -93571629 + (CA)n Simple_repeat Simple_repeat 1 42 0 1749 185 0 4 chr13 26173562 26173874 -93571024 + AluJo SINE Alu 2 312 0 1241 162 0 0 chr13 26174763 26175011 -93569887 - AluSg/x SINE Alu 0 366 119 267 79 0 0 chr13 26175160 26175198 -93569700 + (TG)n Simple_repeat Simple_repeat 2 39 0 1010 122 0 34 chr13 26175198 26175346 -93569552 - FRAM SINE Alu -34 142 1 277 258 116 50 chr13 26175509 26175707 -93569191 - L2 LINE L2 -914 2400 2190 938 173 22 22 chr13 26175987 26176166 -93568732 + AluJb SINE Alu 117 295 -17 25 0 0 0 chr13 26176171 26176196 -93568702 + AT_rich Low_complexity Low_complexity 1 25 0 1639 159 0 95 chr13 26176199 26176526 -93568372 + AluJo SINE Alu 3 298 -4 776 118 0 0 chr13 26176536 26176638 -93568260 + FLAM_C SINE Alu 2 103 -40 1713 106 4 13 chr13 26176940 26177175 -93567723 - AluSq SINE Alu -80 233 1 929 189 17 6 chr13 26177180 26177355 -93567543 - AluJo SINE Alu -18 294 118 2448 72 0 13 chr13 26177607 26177913 -93566985 - AluSq SINE Alu -11 302 1 2371 102 0 0 chr13 26179651 26179946 -93564952 + AluSc SINE Alu 1 295 -14 753 176 24 0 chr13 26180047 26180172 -93564726 + FLAM_C SINE Alu 2 129 -14 1651 151 20 59 chr13 26180959 26181264 -93563634 + AluJo SINE Alu 11 303 -9 2048 109 14 14 chr13 26181266 26181580 -93563318 + AluSx SINE Alu 1 314 0 295 234 78 0 chr13 26182123 26182200 -93562698 + L2 LINE L2 3230 3312 -1 2139 122 20 0 chr13 26182228 26182532 -93562366 + AluSx SINE Alu 1 310 -2 29 0 0 0 chr13 26182910 26182939 -93561959 + AT_rich Low_complexity Low_complexity 1 29 0 2171 91 35 0 chr13 26182950 26183235 -93561663 - AluSx SINE Alu -17 295 1 504 0 0 0 chr13 26183241 26183297 -93561601 + (TG)n Simple_repeat Simple_repeat 2 57 0 561 99 0 99 chr13 26183298 26183399 -93561499 - FRAM SINE Alu -30 146 56 2498 90 0 0 chr13 26184983 26185294 -93559604 + AluSq SINE Alu 1 311 -2 204 266 31 16 chr13 26185725 26185789 -93559109 - L3 LINE CR1 -1068 509 445 413 252 208 6 chr13 26185840 26185999 -93558899 + MIR SINE MIR 60 250 -12 284 305 48 19 chr13 26186019 26186124 -93558774 + MIR SINE MIR 30 137 -71 2095 138 7 0 chr13 26186600 26186905 -93557993 - AluSq SINE Alu -6 307 1 22 0 0 0 chr13 26186905 26186927 -93557971 + AT_rich Low_complexity Low_complexity 1 22 0 422 73 104 31 chr13 26186934 26187030 -93557868 - AluSc SINE Alu -24 285 183 222 350 25 0 chr13 26187910 26187990 -93556908 + L2 LINE L2 3232 3313 0 2588 112 65 83 chr13 26188092 26188585 -93556313 - LTR12 LTR ERV1 -230 484 1 583 108 20 10 chr13 26189069 26189171 -93555727 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 1744 163 0 39 chr13 26189175 26189481 -93555417 - AluJo SINE Alu -17 295 2 327 310 65 13 chr13 26189482 26189637 -93555261 - MIR SINE MIR -65 197 35 184 149 11 43 chr13 26190267 26190361 -93554537 + (TG)n Simple_repeat Simple_repeat 2 92 0 473 231 10 0 chr13 26190904 26191008 -93553890 - MIR SINE MIR -100 162 58 220 204 0 0 chr13 26191710 26191759 -93553139 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 4066 145 32 10 chr13 26191833 26192233 -93552665 + L1PB4 LINE L1 5415 5842 -314 2201 93 11 0 chr13 26192233 26192572 -93552326 + AluSx SINE Alu 1 342 0 4066 145 32 10 chr13 26192572 26192893 -93552005 + L1PB4 LINE L1 5842 6154 -2 215 281 44 59 chr13 26193016 26193151 -93551747 - L2 LINE L2 -222 3050 2918 188 240 184 64 chr13 26193266 26193391 -93551507 + L2 LINE L2 2716 2855 -459 234 326 104 14 chr13 26193720 26193864 -93551034 + L2 LINE L2 2340 2496 -818 431 294 222 8 chr13 26193878 26194126 -93550772 - L3 LINE CR1 -1 1576 1276 2335 74 0 49 chr13 26194190 26194516 -93550382 - AluY SINE Alu -1 310 1 234 362 0 0 chr13 26194665 26194734 -93550164 + MIR SINE MIR 14 82 -180 191 288 34 0 chr13 26194777 26194836 -93550062 + MIR SINE MIR 202 262 0 22 0 0 0 chr13 26194949 26194971 -93549927 + AT_rich Low_complexity Low_complexity 1 22 0 727 217 29 0 chr13 26195136 26195274 -93549624 + FLAM_C SINE Alu 2 143 0 215 194 0 0 chr13 26195275 26195311 -93549587 + polypurine Low_complexity Low_complexity 3 38 0 281 232 0 0 chr13 26195530 26195586 -93549312 - L2 LINE L2 0 3272 3217 198 294 156 56 chr13 26195593 26195773 -93549125 + MIR SINE MIR 59 256 -6 264 214 63 151 chr13 26196099 26196225 -93548673 + MIR SINE MIR 34 148 -60 1083 180 114 4 chr13 26196701 26196956 -93547942 - L1MB4 LINE L1 0 6180 5898 289 336 133 7 chr13 26198039 26198310 -93546588 + L2 LINE L2 2916 3220 -52 734 239 121 3 chr13 26198358 26198655 -93546243 - LTR16A1 LTR ERVL -64 393 62 504 246 131 50 chr13 26198762 26198961 -93545937 - MIR SINE MIR 0 262 48 594 286 182 14 chr13 26199818 26200038 -93544860 + MIR SINE MIR 3 259 -3 1553 129 9 0 chr13 26201624 26201841 -93543057 - AluSg/x SINE Alu -17 293 75 2041 120 20 0 chr13 26202750 26203051 -93541847 + AluSg SINE Alu 1 307 -3 973 199 69 6 chr13 26203058 26203285 -93541613 - L1MB3 LINE L1 -41 6142 5906 2592 172 25 6 chr13 26203487 26203958 -93540940 - L1MB3 LINE L1 -251 5932 5453 1023 236 158 27 chr13 26203964 26204201 -93540697 - MER69B DNA AcHobo -1549 977 773 1636 156 41 4 chr13 26204201 26204506 -93540392 + AluJb SINE Alu 3 317 0 1023 236 158 27 chr13 26204506 26204640 -93540258 - MER69B DNA AcHobo -1753 773 556 975 240 48 0 chr13 26204639 26204868 -93540030 - MER69B DNA AcHobo -787 439 200 * 1639 254 33 60 chr13 26204873 26204983 -93539915 - L1MB3 LINE L1 -844 5302 5191 2200 91 7 7 chr13 26204983 26205279 -93539619 - AluSq SINE Alu -17 296 1 1639 254 33 60 chr13 26205279 26205686 -93539212 - L1MB3 LINE L1 -955 5191 4810 1548 178 64 0 chr13 26205686 26205844 -93539054 - AluJb SINE Alu -13 299 153 239 0 32 0 chr13 26205844 26205875 -93539023 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1548 178 64 0 chr13 26205875 26205997 -93538901 - AluJb SINE Alu -159 153 1 1639 254 33 60 chr13 26205997 26206243 -93538655 - L1MB3 LINE L1 -1336 4810 4559 196 281 146 0 chr13 26208668 26208757 -93536141 - L2 LINE L2 -2 3270 3169 3646 141 75 83 chr13 26209937 26210729 -93534169 + LTR1 LTR ERV1 1 785 0 726 200 109 29 chr13 26210848 26211023 -93533875 + MIR SINE MIR 20 208 -54 271 164 15 15 chr13 26211041 26211108 -93533790 + CT-rich Low_complexity Low_complexity 4 70 0 198 238 24 0 chr13 26212194 26212236 -93532662 - MIR SINE MIR -8 254 212 1607 89 0 0 chr13 26212548 26212846 -93532052 + AluSc SINE Alu 67 364 0 1928 141 0 13 chr13 26213431 26213744 -93531154 - AluJo SINE Alu -3 309 1 273 167 0 0 chr13 26214480 26214534 -93530364 + GA-rich Low_complexity Low_complexity 1 54 0 1792 216 109 88 chr13 26215006 26215707 -93529191 - L1MC5 LINE L1 -72 7889 7163 2062 111 44 0 chr13 26215707 26216004 -93528894 - AluSx SINE Alu 0 312 3 1792 216 109 88 chr13 26216004 26216193 -93528705 - L1MC5 LINE L1 -798 7163 6980 1383 99 21 52 chr13 26216290 26216523 -93528375 - AluSc SINE Alu -1 308 83 720 250 137 103 chr13 26216524 26217418 -93527480 - L1MC5 LINE L1 -978 6830 5968 315 49 0 0 chr13 26217418 26217459 -93527439 - L1MB7 LINE L1 -14 6170 6130 2248 98 0 0 chr13 26217459 26217754 -93527144 + AluSg SINE Alu 1 295 -15 720 250 137 103 chr13 26217754 26218079 -93526819 - L1MC5 LINE L1 -1839 5969 5604 386 171 158 0 chr13 26218564 26218640 -93526258 - MIR SINE MIR -60 148 61 2065 104 0 0 chr13 26218699 26218979 -93525919 + AluSc SINE Alu 6 285 -24 697 224 50 6 chr13 26219084 26219263 -93525635 + L1MD1 LINE L1 4724 4910 -1236 359 177 0 13 chr13 26219278 26219357 -93525541 + L1MD1 LINE L1 4966 5043 -1103 1779 151 3 17 chr13 26219382 26219674 -93525224 + AluJo SINE Alu 1 288 -24 2840 201 14 12 chr13 26219680 26220253 -93524645 + L1MD1 LINE L1 5462 6035 -207 246 184 0 0 chr13 26220524 26220573 -93524325 - Alu SINE Alu -5 128 80 1222 170 166 96 chr13 26220582 26220707 -93524191 - Charlie1 DNA MER1_type 0 2761 2646 1969 100 0 0 chr13 26220707 26220968 -93523930 + AluSx SINE Alu 6 266 -46 1222 170 166 96 chr13 26220968 26221331 -93523567 - Charlie1 DNA MER1_type -115 2646 1 821 161 14 14 chr13 26222876 26223035 -93521863 + MER63 DNA MER1_type 12 792 -53 230 303 50 20 chr13 26223115 26223214 -93521684 + L2 LINE L2 3193 3294 -19 2294 95 0 0 chr13 26223291 26223597 -93521301 - AluY SINE Alu -5 306 1 1791 155 3 7 chr13 26223597 26223900 -93520998 - AluSx SINE Alu -8 304 3 1081 103 0 0 chr13 26226674 26226819 -93518079 + AluSx SINE Alu 1 145 -168 2820 135 10 70 chr13 26226819 26227330 -93517568 + LTR12 LTR ERV1 1 480 -234 1021 122 37 0 chr13 26227331 26227495 -93517403 + AluSx SINE Alu 142 311 -1 3331 208 64 40 chr13 26228011 26228615 -93516283 - MER63D DNA MER1_type 0 1061 422 2140 106 0 0 chr13 26228615 26228908 -93515990 - AluSq SINE Alu -19 294 2 3331 208 64 40 chr13 26228908 26229340 -93515558 - MER63D DNA MER1_type -639 422 1 263 294 76 0 chr13 26231100 26231192 -93513706 + L2 LINE L2 3169 3267 -5 688 123 0 0 chr13 26231546 26231652 -93513246 - AluSg/x SINE Alu -1 309 204 1943 131 23 7 chr13 26233147 26233453 -93511445 + AluSx SINE Alu 1 311 -1 342 238 0 0 chr13 26233481 26233544 -93511354 + L2 LINE L2 3212 3274 -39 610 261 15 20 chr13 26233998 26234193 -93510705 - HAL1 LINE L1 -2302 205 12 792 216 70 12 chr13 26234209 26234380 -93510518 - MIR SINE MIR -49 213 33 338 169 127 0 chr13 26234395 26234466 -93510432 + HAL1 LINE L1 302 381 -2126 222 220 0 20 chr13 26234468 26234518 -93510380 + (CA)n Simple_repeat Simple_repeat 1 49 0 1529 225 73 39 chr13 26234527 26235020 -93509878 - LTR53 LTR ERVL -7 512 3 402 227 275 24 chr13 26235081 26235328 -93509570 + HAL1 LINE L1 431 739 -1768 494 224 120 118 chr13 26235399 26235765 -93509133 - LTR48 LTR ERV1 0 787 219 1033 160 0 0 chr13 26235820 26235989 -93508909 - FRAM SINE Alu -7 169 1 773 206 141 5 chr13 26235996 26236180 -93508718 - MER34C LTR ERV1 -373 212 4 2525 200 95 97 chr13 26236181 26236975 -93507923 + HAL1 LINE L1 845 1638 -869 1649 152 19 35 chr13 26236975 26237285 -93507613 - AluJb SINE Alu -2 310 6 2525 200 95 97 chr13 26237285 26237550 -93507348 + HAL1 LINE L1 1638 1902 -605 594 145 0 0 chr13 26237550 26237633 -93507265 + AluS SINE Alu 2 84 -229 498 251 124 26 chr13 26237636 26237903 -93506995 + HAL1 LINE L1 1891 2183 -324 1025 266 21 8 chr13 26237909 26238146 -93506752 + MIR SINE MIR 2 241 -21 2044 127 0 3 chr13 26238165 26238472 -93506426 - AluSc SINE Alu -3 306 1 601 231 37 77 chr13 26238485 26238784 -93506114 + HAL1 LINE L1 2179 2465 -42 510 167 31 10 chr13 26238787 26238883 -93506015 - LTR16A1 LTR ERVL -10 447 350 309 164 49 0 chr13 26239193 26239254 -93505644 + MER90 LTR ERV1 510 573 -2 2052 115 0 3 chr13 26239943 26240257 -93504641 + AluSx SINE Alu 1 313 0 1955 100 39 0 chr13 26240548 26240703 -93504195 - AluSg SINE Alu -19 291 119 920 42 17 0 chr13 26240703 26240823 -93504075 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 1955 100 39 0 chr13 26240823 26240946 -93503952 - AluSg SINE Alu -191 119 2 1212 176 60 4 chr13 26241036 26241269 -93503629 + AluJo SINE Alu 13 258 -54 206 278 37 0 chr13 26241273 26241327 -93503571 + GA-rich Low_complexity Low_complexity 2 57 0 481 193 179 7 chr13 26243181 26243326 -93501572 - MIR SINE MIR -3 259 90 700 201 81 77 chr13 26243763 26243940 -93500958 + MER6B DNA MER2_type 1 181 -684 2106 110 0 0 chr13 26243940 26244239 -93500659 - AluSx SINE Alu -13 299 1 700 201 81 77 chr13 26244239 26244270 -93500628 + MER6B DNA MER2_type 181 210 0 1183 269 59 6 chr13 26244436 26244756 -93500142 - MLT1E LTR MaLR 0 593 257 819 256 68 8 chr13 26244875 26245109 -93499789 - MIR SINE MIR -3 259 12 233 94 0 0 chr13 26245363 26245395 -93499503 - MIR3 SINE MIR -2 206 175 276 197 30 30 chr13 26245454 26245520 -93499378 - MIR3 SINE MIR -2 206 141 298 245 66 19 chr13 26246002 26246108 -93498790 + L1MC5 LINE L1 7807 7917 -44 2128 131 37 100 chr13 26246254 26246712 -93498186 + MSTB1 LTR MaLR 4 432 0 578 224 97 81 chr13 26246787 26247146 -93497752 - MLT1H LTR MaLR -14 576 55 235 369 0 0 chr13 26248315 26248418 -93496480 - L2 LINE L2 -607 2707 2605 417 135 144 48 chr13 26248525 26248629 -93496269 - MER5B DNA MER1_type -64 114 1 333 102 0 0 chr13 26248773 26248832 -93496066 + (CA)n Simple_repeat Simple_repeat 2 60 0 2041 131 0 28 chr13 26248895 26249216 -93495682 + AluSx SINE Alu 1 312 0 261 353 133 0 chr13 26249437 26249587 -93495311 - MIR SINE MIR -71 191 22 203 343 0 0 chr13 26249968 26250038 -93494860 - MIR SINE MIR -95 167 98 189 255 43 0 chr13 26250283 26250330 -93494568 - MER5A DNA MER1_type -1 188 140 183 80 0 0 chr13 26250370 26250395 -93494503 + (T)n Simple_repeat Simple_repeat 1 25 0 311 138 219 0 chr13 26250472 26250545 -93494353 - FLAM_A SINE Alu -48 85 2 739 224 7 0 chr13 26250545 26250692 -93494206 - MER5B DNA MER1_type -4 174 27 213 186 34 102 chr13 26251777 26251836 -93493062 - L2 LINE L2 -59 3254 3200 206 222 263 44 chr13 26251858 26252044 -93492854 - L2 LINE L2 -220 3093 2885 240 292 108 33 chr13 26252134 26252254 -93492644 - MIR SINE MIR -126 136 8 180 275 125 38 chr13 26252655 26252735 -93492163 + L2 LINE L2 2439 2525 -789 * 236 262 33 0 chr13 26252705 26252766 -93492132 - L2 LINE L2 -4 3309 3247 1255 141 5 0 chr13 26253734 26253919 -93490979 + AluJb SINE Alu 1 186 -126 358 281 56 25 chr13 26253943 26254103 -93490795 + L1MC4a LINE L1 5767 5931 -1877 673 156 52 22 chr13 26254431 26254566 -93490332 + FLAM_C SINE Alu 2 140 -3 437 234 91 7 chr13 26255238 26255392 -93489506 - MLT1J LTR MaLR -156 355 189 192 77 0 0 chr13 26255738 26255764 -93489134 + (A)n Simple_repeat Simple_repeat 1 26 0 471 155 282 0 chr13 26256479 26256582 -93488316 + FLAM_C SINE Alu 2 133 0 2367 202 116 3 chr13 26257127 26257737 -93487161 - L1 LINE L1 -743 5403 4725 3044 130 29 6 chr13 26257737 26258220 -93486678 + L1PB2 LINE L1 5651 6144 -7 29 47 0 0 chr13 26259951 26259994 -93484904 + AT_rich Low_complexity Low_complexity 1 43 0 2690 46 0 0 chr13 26263186 26263491 -93481407 - AluY SINE Alu -6 305 1 1521 170 14 22 chr13 26264646 26264922 -93479976 + AluJo SINE Alu 1 274 -38 2042 152 0 10 chr13 26264924 26265234 -93479664 - AluJo SINE Alu -3 309 3 188 264 96 64 chr13 26265244 26265369 -93479529 - L3 LINE CR1 -393 1184 1056 2191 99 3 0 chr13 26265654 26265948 -93478950 + AluSx SINE Alu 1 295 -17 2738 116 30 25 chr13 26267206 26267637 -93477261 - Tigger2a DNA MER2_type -1 433 1 1393 266 104 27 chr13 26268449 26269419 -93475479 + L2 LINE L2 2230 3275 -38 27 73 0 0 chr13 26270135 26270190 -93474708 + AT_rich Low_complexity Low_complexity 1 55 0 2506 55 3 10 chr13 26270462 26270771 -93474127 + AluY SINE Alu 1 307 -4 230 231 162 46 chr13 26271099 26271315 -93473583 - L1MC5 LINE L1 -145 7816 7576 427 270 70 69 chr13 26271331 26271639 -93473259 + L1MC5 LINE L1 6876 7168 -793 1980 139 14 0 chr13 26271639 26271934 -93472964 + AluJo SINE Alu 2 300 -12 427 270 70 69 chr13 26271934 26271975 -93472923 + L1MC5 LINE L1 7168 7207 -754 274 269 92 43 chr13 26272164 26272305 -93472593 + L1MC5 LINE L1 7272 7419 -542 2280 112 0 3 chr13 26272493 26272796 -93472102 - AluSx SINE Alu -7 305 4 845 166 13 6 chr13 26273278 26273435 -93471463 + L1PB3 LINE L1 5995 6152 -2 183 200 33 50 chr13 26273538 26273598 -93471300 - MER5A DNA MER1_type -2 187 129 1428 194 77 45 chr13 26274033 26274434 -93470464 - L1ME2 LINE L1 -64 6100 5687 2210 81 21 7 chr13 26275197 26275482 -93469416 + AluY SINE Alu 1 289 -22 341 318 8 0 chr13 26275521 26275647 -93469251 + L1M4 LINE L1 2232 2358 -3788 1856 98 17 56 chr13 26275748 26276035 -93468863 + AluSx SINE Alu 15 290 -22 207 335 81 12 chr13 26276128 26276301 -93468597 + L2 LINE L2 2449 2633 -681 209 348 65 11 chr13 26276665 26276757 -93468141 + L2 LINE L2 3129 3225 -47 726 200 113 16 chr13 26278653 26278838 -93466060 - MIR SINE MIR -1 261 59 278 0 54 0 chr13 26279328 26279365 -93465533 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2258 82 0 0 chr13 26279367 26279649 -93465249 - AluSx SINE Alu -30 282 1 2191 124 7 0 chr13 26280292 26280599 -93464299 - AluSx SINE Alu -3 309 1 401 300 135 31 chr13 26281060 26281320 -93463578 - L3b LINE CR1 -53 1530 1244 2067 109 0 68 chr13 26281821 26282143 -93462755 + AluSg SINE Alu 1 300 -10 2234 111 0 10 chr13 26284005 26284311 -93460587 + AluSx SINE Alu 3 305 -7 457 185 91 194 chr13 26285050 26285390 -93459508 + MLT1J LTR MaLR 1 305 -206 239 307 88 22 chr13 26285423 26285560 -93459338 + MLT1J LTR MaLR 299 444 -67 1571 65 0 0 chr13 26286361 26286545 -93458353 + AluY SINE Alu 1 184 -127 691 109 117 16 chr13 26286721 26286849 -93458049 + AluJb SINE Alu 1 141 -171 2569 65 0 0 chr13 26286888 26287197 -93457701 + AluY SINE Alu 1 309 -2 2158 110 10 0 chr13 26287711 26288001 -93456897 + AluSx SINE Alu 1 293 -19 2310 75 0 3 chr13 26288005 26288316 -93456582 + AluY SINE Alu 1 310 0 1973 135 6 35 chr13 26288735 26289053 -93455845 - AluJo SINE Alu -3 309 1 192 152 0 0 chr13 26289202 26289235 -93455663 + (TG)n Simple_repeat Simple_repeat 2 34 0 2631 45 3 3 chr13 26289821 26290131 -93454767 - AluY SINE Alu -1 310 1 2376 52 3 11 chr13 26291114 26291401 -93453497 + AluY SINE Alu 1 285 -26 378 0 0 0 chr13 26291405 26291447 -93453451 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 942 235 4 30 chr13 26291489 26291723 -93453175 - MIR SINE MIR -30 232 5 312 310 9 18 chr13 26291959 26292072 -93452826 + MIR SINE MIR 34 145 -63 852 147 0 0 chr13 26292434 26292563 -93452335 + FRAM SINE Alu 38 166 -10 193 273 227 9 chr13 26292996 26293106 -93451792 + MIR SINE MIR 20 153 -109 22 0 0 0 chr13 26294504 26294526 -93450372 + AT_rich Low_complexity Low_complexity 1 22 0 520 184 136 0 chr13 26294526 26294629 -93450269 - FLAM_C SINE Alu -25 118 2 227 214 125 0 chr13 26294631 26294687 -93450211 + MLT1J LTR MaLR 493 555 0 295 316 50 18 chr13 26294695 26294977 -93449921 + L1ME LINE L1 5528 5818 -303 27 29 0 0 chr13 26295012 26295046 -93449852 + AT_rich Low_complexity Low_complexity 1 34 0 2310 140 102 12 chr13 26295735 26296093 -93448805 - LOR1b LTR ERV1 -2 459 56 1715 158 0 11 chr13 26296093 26296366 -93448532 - AluJo SINE Alu -42 270 1 2310 140 102 12 chr13 26296366 26296428 -93448470 - LOR1b LTR ERV1 -405 56 1 206 306 0 0 chr13 26297055 26297117 -93447781 - L2 LINE L2 -4 3268 3207 266 313 31 0 chr13 26297185 26297281 -93447617 - MIR3 SINE MIR -23 185 87 2212 152 47 2 chr13 26297366 26297767 -93447131 + L1MC1 LINE L1 5915 6333 0 2356 104 10 0 chr13 26297856 26298165 -93446733 - AluSx SINE Alu 0 312 1 1494 195 11 14 chr13 26298240 26298554 -93446344 + AluJo SINE Alu 1 313 0 2021 135 3 7 chr13 26298963 26299267 -93445631 - AluJo SINE Alu -1 311 9 212 228 11 87 chr13 26299440 26299532 -93445366 + MER5A DNA MER1_type 36 120 -69 1438 171 50 12 chr13 26299599 26300030 -93444868 - LTR45B LTR ERV1 0 603 4 443 294 60 28 chr13 26300593 26300841 -93444057 - MIR SINE MIR -5 257 2 225 266 63 0 chr13 26301111 26301190 -93443708 - MIR SINE MIR -67 141 58 2068 104 3 47 chr13 26301405 26301703 -93443195 + AluSx SINE Alu 5 289 -23 222 278 46 37 chr13 26302462 26302570 -93442328 + L2 LINE L2 2591 2699 -615 2299 140 74 2 chr13 26302586 26302992 -93441906 - L1MB3 LINE L1 -15 6168 5734 297 0 0 0 chr13 26303490 26303523 -93441375 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 2062 129 0 4 chr13 26303523 26303802 -93441096 - AluSx SINE Alu -34 278 1 337 238 81 25 chr13 26305522 26305682 -93439216 + L1ME4a LINE L1 5949 6117 -4 831 184 184 30 chr13 26306100 26306408 -93438490 - MSTD LTR MaLR 0 396 1 560 246 53 6 chr13 26306413 26306584 -93438314 - LTR33A LTR ERVL -2 521 343 427 224 154 6 chr13 26306616 26306772 -93438126 - LTR33A LTR ERVL -336 187 9 2617 137 31 24 chr13 26307378 26307803 -93437095 + MSTC LTR MaLR 1 428 0 2128 128 0 6 chr13 26308427 26308739 -93436159 - AluSx SINE Alu -2 310 1 207 0 0 0 chr13 26309453 26309476 -93435422 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1838 125 59 59 chr13 26309994 26310369 -93434529 + THE1C LTR MaLR 1 375 0 2273 69 14 0 chr13 26311492 26311781 -93433117 + AluY SINE Alu 1 293 -18 1973 127 0 0 chr13 26312110 26312386 -93432512 + AluSx SINE Alu 1 276 -36 351 0 0 0 chr13 26312390 26312429 -93432469 + (TG)n Simple_repeat Simple_repeat 2 40 0 1478 221 48 28 chr13 26312542 26312936 -93431962 + L1ME2 LINE L1 5762 6163 -1 1055 173 35 0 chr13 26313243 26313416 -93431482 + AluJo SINE Alu 85 263 -49 186 133 0 0 chr13 26313468 26313498 -93431400 + (A)n Simple_repeat Simple_repeat 1 30 0 229 321 91 29 chr13 26313506 26313749 -93431149 + HAL1 LINE L1 1370 1627 -880 2573 65 0 3 chr13 26313813 26314121 -93430777 + AluY SINE Alu 1 307 -4 2048 133 0 13 chr13 26314139 26314448 -93430450 + AluSg SINE Alu 1 305 -5 2340 107 0 7 chr13 26314560 26314869 -93430029 - AluSx SINE Alu -5 307 1 592 156 83 0 chr13 26315117 26315213 -93429685 + U6 snRNA snRNA 4 107 0 1097 90 7 0 chr13 26315213 26315368 -93429530 + L1MA5A LINE L1 5758 5913 -384 986 169 128 0 chr13 26315373 26315545 -93429353 - MER1B DNA MER1_type -75 222 29 22 0 0 0 chr13 26315630 26315652 -93429246 + AT_rich Low_complexity Low_complexity 1 22 0 800 80 0 0 chr13 26315654 26315754 -93429144 + AluY SINE Alu 1 100 -211 198 0 0 0 chr13 26315756 26315778 -93429120 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 469 300 44 0 chr13 26316322 26316482 -93428416 + MIR SINE MIR 47 213 -49 2203 193 31 13 chr13 26316495 26316947 -93427951 - LTR40b LTR ERVL -2 460 1 23 33 0 0 chr13 26317086 26317116 -93427782 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 26317467 26317493 -93427405 + AT_rich Low_complexity Low_complexity 1 26 0 508 284 26 42 chr13 26317672 26317713 -93427185 + LTR67 LTR ERVL 2 42 -515 1163 179 148 39 chr13 26317713 26318070 -93426828 + MSTD LTR MaLR 1 396 0 508 284 26 42 chr13 26318070 26318218 -93426680 + LTR67 LTR ERVL 42 188 -369 718 217 92 56 chr13 26318238 26318318 -93426580 + MLT1B LTR MaLR 1 77 -313 2360 76 3 0 chr13 26318318 26318628 -93426270 + AluY SINE Alu 1 311 0 718 217 92 56 chr13 26318628 26318796 -93426102 + MLT1B LTR MaLR 77 258 -132 1152 209 57 72 chr13 26318798 26319099 -93425799 + MLT1A1 LTR MaLR 1 298 -67 2157 118 10 0 chr13 26319099 26319405 -93425493 - AluSq SINE Alu -4 309 1 1152 209 57 72 chr13 26319405 26319438 -93425460 + MLT1A1 LTR MaLR 298 330 -35 666 265 76 5 chr13 26319524 26319709 -93425189 + LTR67 LTR ERVL 360 557 0 2299 55 0 44 chr13 26319828 26320161 -93424737 - AluY SINE Alu 0 320 1 786 229 24 0 chr13 26320398 26320564 -93424334 - MER58A DNA MER1_type -54 170 1 268 284 0 14 chr13 26320602 26320676 -93424222 - MLT1J LTR MaLR -327 184 112 236 288 104 16 chr13 26321535 26321660 -93423238 - MLT1L LTR MaLR -14 601 466 324 231 39 48 chr13 26321755 26321859 -93423039 - MLT1L LTR MaLR -345 270 168 235 211 42 74 chr13 26322214 26322309 -93422589 - MLT1L LTR MaLR -521 94 3 965 194 47 93 chr13 26322445 26322831 -93422067 + L1ME2 LINE L1 5768 6141 -23 294 197 48 68 chr13 26322857 26323004 -93421894 + L1MC5 LINE L1 7783 7926 -35 305 219 14 14 chr13 26323242 26323315 -93421583 + L2 LINE L2 3200 3272 0 271 189 153 27 chr13 26324268 26324379 -93420519 - MIR SINE MIR -27 235 111 1377 239 107 9 chr13 26324637 26325097 -93419801 - MLT1D LTR MaLR 0 505 1 2261 92 7 14 chr13 26325366 26325660 -93419238 - AluSx SINE Alu -20 292 1 2408 107 0 0 chr13 26327314 26327622 -93417276 - AluSg SINE Alu -2 308 1 2281 118 0 6 chr13 26328759 26329074 -93415824 + AluSq SINE Alu 1 313 0 377 315 47 8 chr13 26329397 26329524 -93415374 - L2 LINE L2 0 3272 3141 278 359 90 9 chr13 26329687 26329899 -93414999 + MIR SINE MIR 13 241 -21 2443 93 0 0 chr13 26330030 26330330 -93414568 + AluSx SINE Alu 1 300 -12 913 125 0 0 chr13 26333546 26333674 -93411224 - FLAM_C SINE Alu -1 132 5 249 300 0 0 chr13 26334545 26334615 -93410283 - MER91B DNA MER1_type -119 71 2 239 188 0 0 chr13 26334626 26334674 -93410224 + L2 LINE L2 3204 3251 -21 303 267 86 0 chr13 26334867 26334972 -93409926 - L2 LINE L2 0 3313 3200 388 282 30 15 chr13 26335229 26335360 -93409538 + MIR SINE MIR 60 192 -70 2190 116 7 23 chr13 26335454 26335764 -93409134 - AluSx SINE Alu -7 305 1 201 390 42 0 chr13 26335835 26335930 -93408968 - MIR SINE MIR -117 145 47 221 256 110 0 chr13 26336995 26337077 -93407821 - L2 LINE L2 -16 3256 3166 236 225 22 34 chr13 26337438 26337527 -93407371 - L2 LINE L2 -49 3223 3136 1174 148 13 52 chr13 26337816 26337881 -93407017 - L1MB3 LINE L1 -5 6178 6112 2283 114 0 0 chr13 26337881 26338178 -93406720 + AluSx SINE Alu 1 297 -15 1174 148 13 52 chr13 26338178 26338341 -93406557 - L1MB3 LINE L1 -71 6112 5959 3389 197 70 19 chr13 26338355 26339010 -93405888 - L1MA4 LINE L1 -2 6298 5591 2612 53 0 0 chr13 26339010 26339309 -93405589 - AluY SINE Alu -12 299 1 3389 197 70 19 chr13 26339309 26339482 -93405416 - L1MA4 LINE L1 -709 5591 5428 248 344 126 20 chr13 26339482 26339729 -93405169 + L2 LINE L2 2999 3271 -1 2075 241 120 17 chr13 26339785 26340425 -93404473 - L1ME3 LINE L1 -1 6161 5456 3958 47 0 0 chr13 26340538 26341011 -93403887 + L1PA5 LINE L1 5682 6154 0 1877 154 3 0 chr13 26341058 26341351 -93403547 - AluJo SINE Alu -1 311 18 1462 128 188 0 chr13 26341469 26341703 -93403195 - AluSg SINE Alu -13 297 20 651 254 88 12 chr13 26341816 26342056 -93402842 + MIR SINE MIR 5 262 0 203 313 38 15 chr13 26342676 26342807 -93402091 + MIR SINE MIR 11 144 -118 3002 153 20 24 chr13 26342874 26343425 -93401473 + L1MB3 LINE L1 5635 6183 0 203 306 56 56 chr13 26343689 26343833 -93401065 - MIR SINE MIR -10 252 109 285 75 0 0 chr13 26343833 26343873 -93401025 + (TG)n Simple_repeat Simple_repeat 2 41 0 307 208 117 13 chr13 26344040 26344117 -93400781 - MLT1K LTR MaLR -333 255 171 240 318 15 0 chr13 26344141 26344207 -93400691 - L1M4 LINE L1 -2051 4095 4029 1005 152 30 0 chr13 26344304 26344468 -93400430 + FRAM SINE Alu 5 173 -3 25 0 0 0 chr13 26344558 26344583 -93400315 + AT_rich Low_complexity Low_complexity 1 25 0 1067 237 29 12 chr13 26344639 26344985 -93399913 + L1MB7 LINE L1 2932 3283 -2863 6822 181 35 18 chr13 26344985 26346988 -93397910 + L1MB7 LINE L1 3790 5813 -371 1467 187 134 27 chr13 26346988 26347362 -93397536 - LTR47A LTR ERVL 0 452 39 2057 109 10 7 chr13 26347362 26347664 -93397234 + AluSc SINE Alu 1 303 -6 757 128 0 14 chr13 26347679 26347820 -93397078 + (GGGGA)n Simple_repeat Simple_repeat 4 142 0 322 137 20 0 chr13 26347820 26347871 -93397027 - LTR47A LTR ERVL -400 52 1 257 135 192 0 chr13 26347871 26347923 -93396975 + L1MB7 LINE L1 5809 5870 -314 1109 124 0 0 chr13 26347923 26348084 -93396814 + AluSg/x SINE Alu 135 295 -15 735 143 0 0 chr13 26348091 26348203 -93396695 + L1MB7 LINE L1 5874 5985 -199 591 165 31 16 chr13 26348210 26348337 -93396561 + L1MB7 LINE L1 6037 6165 -19 2377 92 0 0 chr13 26348353 26348647 -93396251 + AluSg SINE Alu 1 294 -16 379 267 28 22 chr13 26348648 26348828 -93396070 + L1P5 LINE L1 5271 5451 -705 626 289 108 3 chr13 26348835 26349197 -93395701 + L1ME3A LINE L1 5525 5949 -213 25 83 0 0 chr13 26349414 26349474 -93395424 + AT_rich Low_complexity Low_complexity 1 60 0 775 129 8 24 chr13 26349573 26349697 -93395201 + FLAM_C SINE Alu 11 132 -11 192 353 54 27 chr13 26350082 26350343 -93394555 + L2 LINE L2 2811 3078 -194 201 279 93 23 chr13 26350382 26350468 -93394430 + L2 LINE L2 3173 3264 -8 232 170 226 0 chr13 26351085 26351138 -93393760 - LTR16A LTR ERVL -27 423 359 450 255 94 20 chr13 26351862 26352011 -93392887 - L1ME3A LINE L1 -10 6160 6001 246 282 13 0 chr13 26352200 26352278 -93392620 - MIR3 SINE MIR -7 201 123 382 263 57 45 chr13 26353431 26353589 -93391309 - MIR3 SINE MIR -19 189 16 2137 139 24 32 chr13 26353688 26354062 -93390836 + MSTB2 LTR MaLR 87 457 0 412 263 18 18 chr13 26354319 26354433 -93390465 - MIR SINE MIR -128 134 21 304 356 31 36 chr13 26354636 26354830 -93390068 + MIR3 SINE MIR 9 201 -7 2696 122 9 45 chr13 26355205 26355647 -93389251 + MSTB LTR MaLR 1 426 0 381 317 245 20 chr13 26355731 26356372 -93388526 - L3 LINE CR1 -10 1567 783 306 248 129 40 chr13 26356645 26356746 -93388152 + MIR SINE MIR 88 197 -65 279 238 99 45 chr13 26356904 26357127 -93387771 - L1ME4a LINE L1 -83 6038 5804 * 4583 166 70 33 chr13 26357120 26357822 -93387076 - L1MB3 LINE L1 -3 6180 5506 270 0 0 0 chr13 26357822 26357852 -93387046 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1859 137 7 0 chr13 26357852 26358130 -93386768 - AluSq SINE Alu -33 280 1 4583 166 70 33 chr13 26358130 26359264 -93385634 - L1MB3 LINE L1 -676 5507 4255 339 312 55 70 chr13 26360212 26360411 -93384487 + L1M2 LINE L1 836 1031 -5818 2236 79 11 0 chr13 26361867 26362172 -93382726 + AluY SINE Alu 1 308 0 192 362 78 7 chr13 26362672 26362813 -93382085 - L2 LINE L2 -1333 1981 1831 318 304 88 27 chr13 26363248 26363396 -93381502 - MIR SINE MIR -40 222 66 301 119 0 0 chr13 26363579 26363621 -93381277 - 5S rRNA rRNA -79 42 1 417 313 80 13 chr13 26364136 26364286 -93380612 - MIR SINE MIR -1 261 102 774 299 17 14 chr13 26364864 26365158 -93379740 - Charlie7 DNA MER1_type -2051 561 267 312 319 0 0 chr13 26365248 26365339 -93379559 + L1MC4 LINE L1 6613 6703 -1339 453 128 0 110 chr13 26365350 26365514 -93379384 + (TA)n Simple_repeat Simple_repeat 1 146 0 455 120 0 120 chr13 26365546 26365721 -93379177 + (TA)n Simple_repeat Simple_repeat 1 154 0 312 259 12 12 chr13 26365728 26365813 -93379085 - L1MC4 LINE L1 -1344 6698 6614 312 319 0 0 chr13 26365850 26365941 -93378957 - L1MC4 LINE L1 -1339 6703 6613 774 299 17 14 chr13 26366031 26366325 -93378573 + Charlie7 DNA MER1_type 267 561 -2051 417 313 80 13 chr13 26366903 26367053 -93377845 + MIR SINE MIR 102 261 -1 301 119 0 0 chr13 26367568 26367610 -93377288 + 5S rRNA rRNA 1 42 -79 318 304 88 27 chr13 26367793 26367941 -93376957 + MIR SINE MIR 66 222 -40 192 362 78 7 chr13 26368376 26368517 -93376381 + L2 LINE L2 1831 1981 -1333 207 0 0 0 chr13 26369017 26369040 -93375858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2235 79 11 0 chr13 26369042 26369322 -93375576 - AluY SINE Alu -28 283 1 1528 167 11 14 chr13 26370061 26370336 -93374562 + AluJb SINE Alu 5 278 -34 264 299 0 13 chr13 26370412 26370489 -93374409 + L2 LINE L2 3237 3312 -1 324 245 158 38 chr13 26370616 26370800 -93374098 + L3 LINE CR1 1343 1548 -29 1702 163 11 0 chr13 26371286 26371568 -93373330 - AluJb SINE Alu -23 289 5 2390 66 7 23 chr13 26371960 26372264 -93372634 - AluY SINE Alu -12 299 1 582 268 149 9 chr13 26374152 26374488 -93370410 + L1ME LINE L1 5259 5641 -521 319 232 252 73 chr13 26374490 26374641 -93370257 + MER5B DNA MER1_type 1 178 0 192 205 77 0 chr13 26375100 26375139 -93369759 - L2 LINE L2 -1520 1794 1753 906 210 0 0 chr13 26375153 26375310 -93369588 - AluJb SINE Alu -26 286 130 1986 145 0 7 chr13 26375338 26375634 -93369264 - AluSx SINE Alu -16 296 3 673 252 109 0 chr13 26375806 26376100 -93368798 + L1MC3 LINE L1 7248 7573 -212 250 360 36 56 chr13 26376387 26376526 -93368372 - L2 LINE L2 -434 2880 2747 2255 70 47 7 chr13 26376526 26376825 -93368073 - AluY SINE Alu 0 311 1 250 360 36 56 chr13 26376825 26376935 -93367963 - L2 LINE L2 -567 2747 2636 2037 149 7 0 chr13 26377461 26377769 -93367129 + AluSx SINE Alu 1 310 -2 2268 87 7 0 chr13 26379578 26379866 -93365032 + AluY SINE Alu 1 290 -21 180 220 0 40 chr13 26381073 26381123 -93363775 - MIR SINE MIR -125 137 90 830 262 31 18 chr13 26381488 26381717 -93363181 + MIR SINE MIR 7 238 -24 502 236 273 0 chr13 26381724 26381885 -93363013 - L2 LINE L2 -3 3310 3106 793 246 77 5 chr13 26382069 26382276 -93362622 - MER58A DNA MER1_type -2 222 1 258 32 0 0 chr13 26382712 26382743 -93362155 + (CA)n Simple_repeat Simple_repeat 2 32 0 853 167 73 0 chr13 26383145 26383295 -93361603 + FRAM SINE Alu 1 161 -5 41 21 0 0 chr13 26383602 26383650 -93361248 + AT_rich Low_complexity Low_complexity 1 48 0 260 173 64 27 chr13 26386142 26386252 -93358646 - L1ME4a LINE L1 -3 6118 6005 3842 172 81 10 chr13 26386268 26386970 -93357928 - L1MB8 LINE L1 -16 6162 5348 1697 167 21 11 chr13 26386970 26387252 -93357646 - AluJb SINE Alu -27 285 1 3842 172 81 10 chr13 26387252 26387685 -93357213 - L1MB8 LINE L1 -830 5348 4947 579 263 98 16 chr13 26389170 26389364 -93355534 - MIR SINE MIR 0 262 53 24 32 0 0 chr13 26389555 26389586 -93355312 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 0 0 chr13 26392555 26392589 -93352309 + (TA)n Simple_repeat Simple_repeat 1 34 0 465 321 114 5 chr13 26394998 26395182 -93349716 + MIR SINE MIR 8 211 -51 341 44 0 0 chr13 26395403 26395448 -93349450 - MADE1 DNA Mariner 0 80 36 473 306 156 67 chr13 26395710 26396171 -93348727 - L3 LINE CR1 -644 933 432 189 273 0 0 chr13 26398007 26398051 -93346847 - L2 LINE L2 -1 3312 3269 341 283 76 22 chr13 26398332 26398424 -93346474 + L2 LINE L2 3134 3230 -42 475 297 84 25 chr13 26400452 26400676 -93344222 + MIR SINE MIR 8 245 -17 24 0 0 0 chr13 26400920 26400944 -93343954 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 26402666 26402700 -93342198 + AT_rich Low_complexity Low_complexity 1 34 0 235 312 153 35 chr13 26403108 26403390 -93341508 - L2 LINE L2 -1154 2160 1846 730 171 0 14 chr13 26403493 26403639 -93341259 + L1MB7 LINE L1 5997 6140 -44 478 292 153 14 chr13 26403846 26404062 -93340836 - MIR SINE MIR -9 253 8 1417 221 58 120 chr13 26404939 26405564 -93339334 + L1M4 LINE L1 2 587 -5955 2246 163 102 39 chr13 26405585 26406179 -93338719 + L1M4 LINE L1 724 1752 -4893 1210 106 6 18 chr13 26406188 26406358 -93338540 + AluSx SINE Alu 23 190 -122 501 134 0 0 chr13 26406358 26406440 -93338458 + AluSp/q SINE Alu 226 307 -6 2498 218 60 34 chr13 26406440 26407299 -93337599 + L1M4 LINE L1 1087 2134 -4429 1380 173 222 56 chr13 26407313 26407759 -93337139 + MLT2B1 LTR ERVL 1 520 0 1000 204 109 6 chr13 26407766 26408134 -93336764 + L1M4 LINE L1 2121 2531 -3851 870 231 78 36 chr13 26408136 26408438 -93336460 + L1M4 LINE L1 2665 2986 -3396 1770 163 6 32 chr13 26408438 26408751 -93336147 + AluSx SINE Alu 1 305 -7 870 231 78 36 chr13 26408751 26408807 -93336091 + L1M4 LINE L1 2986 3038 -3344 * 1256 199 71 6 chr13 26408804 26409141 -93335757 + L1M4 LINE L1 5219 5577 -805 672 114 124 6 chr13 26409119 26409283 -93335615 - L1M LINE L1 -743 5403 5225 * 817 96 16 0 chr13 26409450 26409575 -93335323 + MER30 DNA MER1_type 1 127 -103 1249 226 186 26 chr13 26410470 26410971 -93333927 + MLT1G LTR MaLR 10 590 0 282 242 65 0 chr13 26411105 26411167 -93333731 + L2 LINE L2 3248 3313 0 24 67 0 0 chr13 26411284 26411329 -93333569 + AT_rich Low_complexity Low_complexity 1 45 0 274 183 256 7 chr13 26412263 26412345 -93332553 + MIR3 SINE MIR 104 204 -4 364 294 110 16 chr13 26412762 26413017 -93331881 - L1ME4a LINE L1 -291 5830 5552 1754 139 36 27 chr13 26414029 26414330 -93330568 - AluJb SINE Alu -8 304 1 2083 57 0 4 chr13 26414621 26414904 -93329994 + L1PA7 LINE L1 5869 6150 -4 783 0 0 0 chr13 26415173 26415260 -93329638 + (TG)n Simple_repeat Simple_repeat 1 87 0 1835 105 26 0 chr13 26415293 26415559 -93329339 - AluSq SINE Alu -40 273 1 645 180 7 50 chr13 26416266 26416405 -93328493 + FLAM_C SINE Alu 1 133 0 1688 176 10 13 chr13 26416410 26416717 -93328181 + AluJo SINE Alu 1 306 -6 2095 137 0 10 chr13 26416839 26417145 -93327753 + AluSx SINE Alu 1 303 -9 2219 105 10 0 chr13 26417147 26417452 -93327446 + AluY SINE Alu 1 308 -3 29 0 0 0 chr13 26417452 26417481 -93327417 + AT_rich Low_complexity Low_complexity 1 29 0 195 100 0 0 chr13 26417992 26418022 -93326876 + (TA)n Simple_repeat Simple_repeat 1 30 0 327 175 10 82 chr13 26418031 26418128 -93326770 - L1MC4 LINE L1 -1339 6703 6614 2428 81 0 3 chr13 26419744 26420054 -93324844 + AluY SINE Alu 2 310 -1 3337 146 82 16 chr13 26420094 26420732 -93324166 + L1MD1 LINE L1 5563 6242 0 463 229 179 0 chr13 26420907 26421047 -93323851 - Charlie1b DNA MER1_type -309 214 50 1722 57 0 5 chr13 26421958 26422167 -93322731 - AluY SINE Alu -17 294 87 1672 135 74 34 chr13 26422235 26422532 -93322366 - AluSx SINE Alu -3 309 1 245 138 0 69 chr13 26422972 26423030 -93321868 + L1MC4 LINE L1 6649 6702 -1340 181 289 104 44 chr13 26423490 26423625 -93321273 + L2 LINE L2 2291 2433 -881 * 3172 266 120 23 chr13 26423608 26425033 -93319865 - L2 LINE L2 -1 3312 1759 216 292 99 59 chr13 26425414 26425567 -93319331 + L2 LINE L2 1851 2015 -1299 2163 109 0 26 chr13 26425567 26425738 -93319160 - AluSq SINE Alu -9 304 143 189 0 0 0 chr13 26425738 26425759 -93319139 + (TG)n Simple_repeat Simple_repeat 2 22 0 2163 109 0 26 chr13 26425759 26425899 -93318999 - AluSq SINE Alu -170 143 1 216 292 99 59 chr13 26425899 26425947 -93318951 + L2 LINE L2 2015 2060 -1254 313 320 98 19 chr13 26425962 26426287 -93318611 - L1ME LINE L1 -454 5667 5317 23 0 0 0 chr13 26426549 26426572 -93318326 + AT_rich Low_complexity Low_complexity 1 23 0 410 329 55 68 chr13 26427103 26427486 -93317412 + L2 LINE L2 2895 3272 0 1751 155 78 0 chr13 26428062 26428397 -93316501 + Tigger2 DNA MER2_type 1 361 -2357 194 382 0 0 chr13 26430071 26430139 -93314759 + MIR3 SINE MIR 117 184 -24 730 238 113 25 chr13 26430501 26430741 -93314157 - MIR SINE MIR -1 261 1 284 159 0 16 chr13 26430789 26430852 -93314046 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 301 273 10 40 chr13 26432068 26432167 -93312731 - L2 LINE L2 0 3272 3177 481 190 34 87 chr13 26432207 26432369 -93312529 - MER33 DNA MER1_type -251 73 1 259 236 0 2 chr13 26432563 26432622 -93312276 - MLT1L LTR MaLR -9 606 522 535 279 155 35 chr13 26432650 26432940 -93311958 - MLT1K LTR MaLR -172 416 92 636 292 74 19 chr13 26433072 26433288 -93311610 - MIR SINE MIR -13 249 22 918 191 0 25 chr13 26433695 26433857 -93311041 - FRAM SINE Alu -8 158 1 488 183 183 0 chr13 26434137 26434241 -93310657 - FLAM_A SINE Alu -6 127 5 2147 220 96 22 chr13 26434242 26434918 -93309980 - L1ME2 LINE L1 -30 6134 5412 23 0 0 0 chr13 26434980 26435003 -93309895 + AT_rich Low_complexity Low_complexity 1 23 0 2197 68 29 0 chr13 26435976 26436254 -93308644 + AluY SINE Alu 1 286 -25 28 29 0 0 chr13 26436665 26436700 -93308198 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr13 26436832 26436874 -93308024 + AT_rich Low_complexity Low_complexity 1 42 0 203 184 0 0 chr13 26438382 26438420 -93306478 + A-rich Low_complexity Low_complexity 1 38 0 575 310 11 16 chr13 26439944 26440128 -93304770 + L2 LINE L2 3113 3295 -18 299 303 90 0 chr13 26440338 26440427 -93304471 + L2 LINE L2 3208 3304 -9 30 45 0 0 chr13 26440690 26440734 -93304164 + AT_rich Low_complexity Low_complexity 1 44 0 270 0 0 0 chr13 26440801 26440831 -93304067 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1813 141 46 0 chr13 26440843 26441106 -93303792 - AluSx SINE Alu -37 275 1 2197 108 0 16 chr13 26441162 26441467 -93303431 - AluSx SINE Alu -12 300 1 4403 149 77 13 chr13 26442476 26443596 -93301302 + L1MB2 LINE L1 4954 6143 -28 281 211 66 0 chr13 26443610 26443686 -93301212 + Charlie5 DNA MER1_type 120 200 -2412 * 362 215 107 27 chr13 26443680 26443829 -93301069 + Charlie5 DNA MER1_type 2348 2508 -104 282 359 76 31 chr13 26443859 26444082 -93300816 - L2 LINE L2 -1567 1747 1515 451 195 7 71 chr13 26444518 26444623 -93300275 - Charlie5 DNA MER1_type 0 2624 2531 1458 172 100 4 chr13 26444623 26444884 -93300014 - AluJb SINE Alu -26 286 1 451 195 7 71 chr13 26444884 26444932 -93299966 - Charlie5 DNA MER1_type -93 2531 2481 2151 121 13 0 chr13 26445501 26445806 -93299092 + AluSx SINE Alu 1 309 -3 3525 153 67 30 chr13 26445992 26446691 -93298207 + LTR8A LTR ERV1 1 725 -2 4325 158 64 21 chr13 26446930 26447754 -93297144 - MER21B LTR ERV1 -3 860 1 2364 115 24 99 chr13 26447949 26448592 -93296306 - MER4E LTR ERV1 0 766 1 239 292 14 14 chr13 26448609 26448681 -93296217 - L2 LINE L2 -55 3258 3187 2165 105 3 3 chr13 26448774 26449060 -93295838 - AluSg SINE Alu -24 286 1 334 311 192 11 chr13 26449928 26450105 -93294793 - MIR SINE MIR -3 259 51 272 250 342 22 chr13 26450271 26450455 -93294443 - MIR SINE MIR -7 255 13 197 319 66 22 chr13 26450552 26450643 -93294255 + L2 LINE L2 2716 2810 -504 216 0 0 0 chr13 26452509 26452533 -93292365 + (CCG)n Simple_repeat Simple_repeat 3 26 0 309 164 45 0 chr13 26455436 26455503 -93289395 + MLT1K LTR MaLR 509 578 -10 185 339 51 0 chr13 26456340 26456399 -93288499 + L2 LINE L2 3249 3310 -3 278 328 106 93 chr13 26456509 26456633 -93288265 - L2 LINE L2 -17 3255 3134 1709 153 58 4 chr13 26456633 26456907 -93287991 + AluJb SINE Alu 1 289 -23 278 328 106 93 chr13 26456907 26457178 -93287720 - L2 LINE L2 -138 3134 2855 316 316 217 25 chr13 26457264 26457836 -93287062 - L2 LINE L2 -620 2694 2013 207 0 0 0 chr13 26459740 26459763 -93285135 + (T)n Simple_repeat Simple_repeat 1 23 0 342 222 105 59 chr13 26460302 26460455 -93284443 - L2 LINE L2 -22 3291 3132 1881 139 20 33 chr13 26460833 26461136 -93283762 - AluJb SINE Alu -13 299 1 730 252 61 8 chr13 26461221 26461467 -93283431 + MIR SINE MIR 2 260 -2 2018 74 0 4 chr13 26461913 26462196 -93282702 - AluSg SINE Alu 0 309 28 790 276 112 0 chr13 26462528 26462760 -93282138 + MIR SINE MIR 2 259 -3 380 297 155 0 chr13 26462927 26463082 -93281816 + L2 LINE L2 2877 3055 -258 936 235 73 17 chr13 26463085 26463539 -93281359 - MLT1F1 LTR MaLR -1 566 4 660 214 61 72 chr13 26463542 26463804 -93281094 + L2 LINE L2 3055 3313 0 745 174 65 131 chr13 26464634 26464909 -93279989 + L2 LINE L2 3057 3313 0 414 297 138 0 chr13 26466543 26466688 -93278210 - MIR SINE MIR -74 188 24 1953 141 10 0 chr13 26466688 26466985 -93277913 - AluJo SINE Alu -12 300 1 296 279 132 37 chr13 26467393 26467583 -93277315 + MIR SINE MIR 28 235 -27 28 48 0 0 chr13 26467627 26467669 -93277229 + AT_rich Low_complexity Low_complexity 1 42 0 384 77 0 0 chr13 26467709 26467761 -93277137 + (TA)n Simple_repeat Simple_repeat 1 52 0 250 329 26 0 chr13 26468316 26468392 -93276506 + MIR3 SINE MIR 92 169 -39 862 154 0 0 chr13 26469813 26469936 -93274962 - FLAM_A SINE Alu -14 128 6 533 223 120 54 chr13 26471940 26472124 -93272774 + MIR SINE MIR 7 202 -60 1372 245 82 3 chr13 26472253 26472721 -93272177 + Zaphod DNA AcHobo 102 655 -3376 757 122 151 0 chr13 26472795 26472934 -93271964 + MER2 DNA MER2_type 7 166 -179 254 157 0 0 chr13 26472982 26473033 -93271865 + MER2 DNA MER2_type 160 210 -135 235 184 0 0 chr13 26473085 26473123 -93271775 + MER2 DNA MER2_type 283 320 -25 396 167 11 0 chr13 26473389 26473479 -93271419 + Zaphod DNA AcHobo 3618 3708 -323 419 184 72 7 chr13 26473543 26473695 -93271203 + Zaphod DNA AcHobo 3829 3990 -41 223 217 0 0 chr13 26474791 26474837 -93270061 - MIR SINE MIR -71 191 146 293 233 27 0 chr13 26477452 26477525 -93267373 + MIR SINE MIR 78 152 -110 383 204 116 35 chr13 26478738 26478910 -93265988 + HAL1 LINE L1 2321 2506 -1 239 294 65 22 chr13 26479155 26479247 -93265651 + L2 LINE L2 3169 3264 -8 769 279 95 29 chr13 26479277 26479403 -93265495 - L1ME4a LINE L1 -11 6110 5994 879 153 0 0 chr13 26479403 26479534 -93265364 - FLAM_C SINE Alu -2 131 1 769 279 95 29 chr13 26479534 26479985 -93264913 - L1ME4a LINE L1 -127 5994 5495 295 365 47 18 chr13 26480489 26480659 -93264239 - L2 LINE L2 -1039 2275 2101 870 183 0 0 chr13 26480954 26481091 -93263807 + FLAM_C SINE Alu 1 137 -6 489 329 160 30 chr13 26481202 26481676 -93263222 + L1MC4a LINE L1 6047 6582 -1226 516 256 6 26 chr13 26481724 26481880 -93263018 + L1MC5 LINE L1 6625 6777 -1184 774 268 110 20 chr13 26481962 26482261 -93262637 - MER77 LTR ERV1 -6 599 274 667 247 157 1 chr13 26482256 26482382 -93262516 - MER77 LTR ERV1 -195 383 278 * 246 32 0 0 chr13 26482382 26482413 -93262485 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 667 247 157 1 chr13 26482413 26482503 -93262395 - MER77 LTR ERV1 -300 278 154 1955 209 127 52 chr13 26482633 26483550 -93261348 + L1MC5 LINE L1 6772 7756 -205 610 148 68 43 chr13 26483631 26483793 -93261105 + Charlie1 DNA MER1_type 2595 2760 -1 256 291 0 0 chr13 26483904 26483959 -93260939 + L2 LINE L2 3210 3264 -8 841 269 79 69 chr13 26484430 26484600 -93260298 - MLT1J LTR MaLR -125 386 219 2202 108 14 0 chr13 26484600 26484896 -93260002 + AluSx SINE Alu 1 300 -12 841 269 79 69 chr13 26484896 26484919 -93259979 - MLT1J LTR MaLR -292 219 198 2013 82 72 14 chr13 26484919 26485211 -93259687 - AluSg1 SINE Alu 0 309 1 841 269 79 69 chr13 26485211 26485395 -93259503 - MLT1J LTR MaLR -313 198 4 1936 216 97 94 chr13 26485579 26487030 -93257868 - Charlie1a DNA MER1_type 0 1455 1 349 278 41 18 chr13 26487266 26487435 -93257463 - L1MC4 LINE L1 -128 7914 7742 387 246 156 45 chr13 26487499 26487698 -93257200 - L1MC4 LINE L1 -508 7534 7314 246 265 22 88 chr13 26488026 26488343 -93256555 + L1ME LINE L1 5010 5305 -841 189 121 0 0 chr13 26488350 26488383 -93256515 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 291 45 27 chr13 26488425 26488535 -93256363 - L2 LINE L2 -17 3296 3185 451 260 66 15 chr13 26488733 26488929 -93255969 + L1ME LINE L1 5614 5819 -302 2084 120 16 3 chr13 26489259 26489567 -93255331 + AluSx SINE Alu 1 312 0 767 206 47 6 chr13 26490082 26490252 -93254646 - MER5B DNA MER1_type 0 178 2 210 311 120 44 chr13 26491183 26491408 -93253490 - L2 LINE L2 -1 3271 3030 279 173 0 0 chr13 26491918 26491970 -93252928 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 273 250 34 45 chr13 26493790 26493878 -93251020 - MIR3 SINE MIR -12 196 110 847 249 82 25 chr13 26494269 26494586 -93250312 - MER46C DNA MER2_type -3 335 1 806 268 20 10 chr13 26494591 26494789 -93250109 - MIR SINE MIR -10 252 53 674 239 86 29 chr13 26494788 26494997 -93249901 - MIR SINE MIR -6 256 36 * 24 0 0 0 chr13 26498608 26498632 -93246266 + AT_rich Low_complexity Low_complexity 1 24 0 1965 122 0 7 chr13 26499461 26499757 -93245141 - AluSx SINE Alu -18 294 1 328 306 52 52 chr13 26500183 26500317 -93244581 + MIR3 SINE MIR 21 154 -54 2169 96 21 3 chr13 26500869 26501160 -93243738 - AluSx SINE Alu -16 296 1 578 270 72 31 chr13 26501457 26501679 -93243219 - MIR SINE MIR -29 233 3 245 218 73 18 chr13 26503292 26503402 -93241496 + L1ME LINE L1 5317 5432 -732 180 77 0 0 chr13 26503439 26503465 -93241433 + (TTTTTG)n Simple_repeat Simple_repeat 6 31 0 1895 156 12 92 chr13 26503637 26503819 -93241079 + MLT1B LTR MaLR 1 131 -259 2157 92 65 0 chr13 26503819 26504111 -93240787 + AluSp SINE Alu 1 311 -2 1895 156 12 92 chr13 26504111 26504352 -93240546 + MLT1B LTR MaLR 131 390 0 494 285 69 34 chr13 26504538 26504829 -93240069 + ERVL LTR ERVL 4679 4979 -785 2500 111 16 3 chr13 26504829 26504878 -93240020 + L1PB1 LINE L1 5734 5781 -370 351 0 0 0 chr13 26504878 26504917 -93239981 + (CA)n Simple_repeat Simple_repeat 2 40 0 2500 111 16 3 chr13 26504917 26505254 -93239644 + L1PB1 LINE L1 5781 6125 -26 372 333 119 11 chr13 26505499 26505676 -93239222 - MER91A DNA MER1_type 0 196 1 469 270 57 6 chr13 26505697 26505856 -93239042 + ERVL LTR ERVL 5224 5390 -374 255 257 9 44 chr13 26506221 26506334 -93238564 + MLT1K LTR MaLR 124 232 -356 25 75 0 0 chr13 26506898 26506951 -93237947 + AT_rich Low_complexity Low_complexity 1 53 0 2651 123 33 12 chr13 26506952 26507375 -93237523 + MSTB1 LTR MaLR 1 432 0 232 234 31 0 chr13 26507392 26507456 -93237442 + L1ME LINE L1 5861 5926 -195 522 141 12 0 chr13 26507527 26507612 -93237286 - MSTB1 LTR MaLR -346 86 1 31 26 0 0 chr13 26507633 26507671 -93237227 + AT_rich Low_complexity Low_complexity 1 38 0 2142 115 0 11 chr13 26507799 26508117 -93236781 - AluSx SINE Alu 0 315 1 5803 140 34 17 chr13 26508313 26509332 -93235566 + Tigger3b DNA MER2_type 137 1177 -1851 2131 82 68 0 chr13 26509332 26509611 -93235287 + AluSp SINE Alu 1 298 -15 5803 140 34 17 chr13 26509611 26509667 -93235231 + Tigger3b DNA MER2_type 1177 1231 0 1468 206 31 17 chr13 26509671 26509861 -93235037 + L1ME LINE L1 5384 5583 -581 2399 106 0 0 chr13 26509861 26510173 -93234725 - AluSx SINE Alu 0 312 1 1468 206 31 17 chr13 26510173 26510342 -93234556 + L1ME LINE L1 5583 5748 -416 504 298 118 28 chr13 26510368 26510768 -93234130 + LTR16A LTR ERVL 11 446 -4 468 291 181 0 chr13 26510782 26511009 -93233889 + HERV16 LTR ERVL 21 288 -4708 2904 279 109 18 chr13 26511184 26512430 -93232468 - ERVL LTR ERVL -677 5087 3728 1001 324 44 15 chr13 26512555 26513036 -93231862 - ERVL LTR ERVL -2224 3540 3046 258 163 0 0 chr13 26513107 26513150 -93231748 + MER94 DNA DNA 71 113 -21 259 270 95 0 chr13 26513161 26513235 -93231663 - ERVL LTR ERVL -2720 3044 2964 3604 268 55 31 chr13 26513958 26515519 -93229379 + L1ME1 LINE L1 37 1635 -4761 2088 217 65 71 chr13 26515845 26516299 -93228599 + L1ME1 LINE L1 4100 4548 -1667 1925 156 0 7 chr13 26516299 26516588 -93228310 + AluJb SINE Alu 1 287 -25 2088 217 65 71 chr13 26516588 26516996 -93227902 + L1ME1 LINE L1 4548 4957 -1258 5206 221 69 53 chr13 26517002 26517064 -93227834 + L1M4b LINE L1 11 70 -6785 1208 196 100 34 chr13 26517064 26517355 -93227543 - AluJo SINE Alu -2 310 1 5206 221 69 53 chr13 26517355 26518553 -93226345 + L1M4b LINE L1 70 1280 -5575 218 32 32 0 chr13 26518553 26518584 -93226314 + (TGG)n Simple_repeat Simple_repeat 1 32 0 5206 221 69 53 chr13 26518584 26519185 -93225713 + L1M4b LINE L1 1280 1870 -4985 2470 241 16 38 chr13 26519193 26519953 -93224945 + L1ME1 LINE L1 5486 6228 -7 1679 303 71 16 chr13 26520349 26521094 -93223804 - ERVL LTR ERVL -3121 2643 1858 504 179 0 45 chr13 26521119 26521231 -93223667 - L1ME1 LINE L1 -6 6160 6054 376 309 62 15 chr13 26521253 26521658 -93223240 + L1M4 LINE L1 4628 5051 -1095 3055 188 81 33 chr13 26521797 26522343 -93222555 + L1MDa LINE L1 26 544 -5996 2116 112 0 10 chr13 26522343 26522639 -93222259 - AluSx SINE Alu -19 293 1 3055 188 81 33 chr13 26522639 26523737 -93221161 + L1MDa LINE L1 544 2261 -4279 2015 137 3 3 chr13 26523737 26524029 -93220869 + AluSx SINE Alu 1 292 -20 3055 188 81 33 chr13 26524029 26524247 -93220651 + L1MDa LINE L1 2261 2467 -4073 332 359 144 0 chr13 26524247 26524517 -93220381 - L2 LINE L2 -677 2637 2329 198 0 0 0 chr13 26524594 26524616 -93220282 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1103 269 40 73 chr13 26524654 26525134 -93219764 + ERVL LTR ERVL 4680 5143 -621 1830 136 28 1 chr13 26525134 26525531 -93219367 - L1MC/D LINE L1 -743 5403 5164 5575 153 30 84 chr13 26525536 26527343 -93217555 - L1PA16 LINE L1 -7 6159 4462 577 103 0 0 chr13 26527343 26527430 -93217468 + Alu SINE Alu 226 312 0 5575 153 30 84 chr13 26527430 26528083 -93216815 - L1PA16 LINE L1 -1704 4462 3775 180 143 0 0 chr13 26528729 26528771 -93216127 + (CAT)n Simple_repeat Simple_repeat 3 44 0 4911 222 24 7 chr13 26529315 26530151 -93214747 - L1 LINE L1 -2358 3788 2920 2394 167 47 0 chr13 26530151 26530558 -93214340 - MSTB LTR MaLR 0 426 1 4911 222 24 7 chr13 26530558 26531078 -93213820 - L1 LINE L1 -3226 2920 2410 588 195 0 65 chr13 26531084 26531143 -93213755 - L1MC/D LINE L1 -985 5161 5100 2287 93 3 0 chr13 26531143 26531444 -93213454 - AluY SINE Alu -9 302 1 588 195 0 65 chr13 26531444 26531569 -93213329 - L1MC/D LINE L1 -1046 5100 4989 2172 75 43 0 chr13 26531701 26531980 -93212918 - AluSx SINE Alu -1 311 21 2908 245 29 7 chr13 26532019 26532143 -93212755 - L1MC/D LINE L1 -1969 4177 4057 1112 211 128 29 chr13 26532143 26532455 -93212443 + MER2 DNA MER2_type 2 344 0 2908 245 29 7 chr13 26532455 26533183 -93211715 - L1MC/D LINE L1 -2089 4057 3306 344 114 41 179 chr13 26533187 26533310 -93211588 - MLT2B2 LTR ERVL 0 515 410 7202 79 6 2 chr13 26533410 26535169 -93209729 + L1PA7 LINE L1 4309 6073 -81 286 98 0 0 chr13 26535167 26535208 -93209690 + L1P3 LINE L1 5807 5847 -325 * 379 220 42 17 chr13 26535291 26535409 -93209489 + MLT2F LTR ERVL 543 663 0 451 161 71 18 chr13 26536174 26536286 -93208612 + L1M3e LINE L1 1 118 -6912 3822 83 0 45 chr13 26536286 26536538 -93208360 - MER41A LTR ERV1 0 554 292 6216 18 0 3 chr13 26536538 26537251 -93207647 - L1PA3 LINE L1 -3 6152 5442 3822 83 0 45 chr13 26537251 26537578 -93207320 - MER41A LTR ERV1 -262 292 1 999 248 29 9 chr13 26537593 26537892 -93207006 + L1M3e LINE L1 137 490 -6540 3711 187 94 32 chr13 26538138 26538275 -93206623 - L1MCa LINE L1 -3875 2732 2605 2274 102 0 3 chr13 26538275 26538570 -93206328 - AluY SINE Alu -15 296 3 3711 187 94 32 chr13 26538570 26540877 -93204021 - L1MCa LINE L1 -4002 2605 266 3049 136 37 9 chr13 26540887 26541423 -93203475 + L1MB2 LINE L1 5619 6169 -2 3703 234 72 18 chr13 26541473 26542771 -93202127 - L1M4 LINE L1 -1576 4570 3202 536 161 71 137 chr13 26542771 26542846 -93202052 - MLT1D LTR MaLR -258 247 169 702 229 0 0 chr13 26542846 26542977 -93201921 - FLAM_A SINE Alu -2 131 1 536 161 71 137 chr13 26542977 26543112 -93201786 - MLT1D LTR MaLR -336 169 51 1783 146 91 0 chr13 26543282 26543569 -93201329 - AluSq SINE Alu 0 313 1 216 254 32 0 chr13 26543584 26543647 -93201251 + GA-rich Low_complexity Low_complexity 4 68 0 324 70 0 0 chr13 26543653 26543696 -93201202 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 263 250 44 0 chr13 26543873 26543941 -93200957 - L2 LINE L2 -12 3301 3231 2049 116 18 0 chr13 26544172 26544468 -93200430 + AluSx SINE Alu 1 301 0 1179 298 82 11 chr13 26544711 26545322 -93199576 + MLT2F LTR ERVL 4 657 -6 21 0 0 0 chr13 26547402 26547423 -93197475 + AT_rich Low_complexity Low_complexity 1 21 0 299 141 141 0 chr13 26547450 26547521 -93197377 + L1MC4 LINE L1 7136 7216 -826 1955 134 9 0 chr13 26547527 26547856 -93197042 + L1MA6 LINE L1 5618 5949 -351 1771 139 3 63 chr13 26548457 26548773 -93196125 - AluJo SINE Alu -15 297 1 502 292 118 0 chr13 26549052 26549213 -93195685 + MIR SINE MIR 56 235 -27 1718 146 34 4 chr13 26549406 26549673 -93195225 + AluJo SINE Alu 19 293 -19 2303 106 0 0 chr13 26549881 26550174 -93194724 + AluSg SINE Alu 1 293 -17 249 125 0 143 chr13 26550314 26550332 -93194566 - L2 LINE L2 0 3313 3294 2090 137 0 0 chr13 26550332 26550661 -93194237 - AluSx SINE Alu 0 329 1 249 125 0 143 chr13 26550661 26550697 -93194201 - L2 LINE L2 -19 3294 3266 1645 319 181 14 chr13 26550707 26551502 -93193396 - L2 LINE L2 -1371 1943 1283 1682 183 62 0 chr13 26551502 26551792 -93193106 + AluJo SINE Alu 1 308 -4 1645 319 181 14 chr13 26551792 26552368 -93192530 - L2 LINE L2 -2031 1283 342 237 257 91 38 chr13 26552373 26552518 -93192380 - MER112 DNA MER1_type -37 223 62 342 0 0 0 chr13 26552518 26552556 -93192342 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 257 91 38 chr13 26552556 26552620 -93192278 - MER112 DNA MER1_type -198 62 3 2333 209 102 56 chr13 26552852 26553616 -93191282 + MER21B LTR ERV1 14 812 -51 2282 111 0 3 chr13 26554189 26554496 -93190402 - AluSx SINE Alu -6 306 1 235 195 126 58 chr13 26554620 26554707 -93190191 - L2 LINE L2 -37 3276 3184 198 103 0 0 chr13 26556422 26556451 -93188447 + (A)n Simple_repeat Simple_repeat 1 29 0 2296 99 3 0 chr13 26556982 26557284 -93187614 + AluSx SINE Alu 1 303 -9 2748 152 27 6 chr13 26557293 26557781 -93187117 + L1MB3 LINE L1 5686 6183 0 280 300 0 0 chr13 26559142 26559232 -93185666 - MIR SINE MIR -54 208 119 1688 159 52 10 chr13 26559401 26559690 -93185208 - AluJo SINE Alu -11 301 1 530 307 132 41 chr13 26559782 26560388 -93184510 - L1MC4a LINE L1 -1768 6040 5380 618 263 11 17 chr13 26560586 26560761 -93184137 - MER5B DNA MER1_type -4 174 1 347 307 39 0 chr13 26561103 26561230 -93183668 - L2 LINE L2 0 3313 3182 315 122 0 0 chr13 26562593 26562642 -93182256 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 2407 78 3 0 chr13 26562879 26563174 -93181724 + AluY SINE Alu 1 296 -15 279 0 0 0 chr13 26563248 26563279 -93181619 + (CA)n Simple_repeat Simple_repeat 1 31 0 254 136 0 17 chr13 26563925 26563984 -93180914 + (GGA)n Simple_repeat Simple_repeat 3 60 0 1963 118 0 7 chr13 26567182 26567454 -93177444 + AluSx SINE Alu 31 300 -12 361 285 77 8 chr13 26567850 26567980 -93176918 - MIR SINE MIR -103 159 21 7183 44 0 5 chr13 26568131 26569236 -93175662 - L1PA6 LINE L1 0 6154 5039 1980 134 0 48 chr13 26569268 26569581 -93175317 - AluJo SINE Alu -14 298 1 1941 209 30 52 chr13 26570224 26570312 -93174586 + MLT1B-int LTR MaLR 941 1029 -342 2084 136 0 16 chr13 26570312 26570620 -93174278 + AluJo SINE Alu 2 304 -8 1941 209 30 52 chr13 26570620 26570827 -93174071 + MLT1B-int LTR MaLR 1029 1227 -144 2192 113 0 3 chr13 26570827 26571120 -93173778 - AluSq SINE Alu -21 292 1 1941 209 30 52 chr13 26571120 26571249 -93173649 + MLT1B-int LTR MaLR 1227 1357 -14 2124 133 7 83 chr13 26571254 26571437 -93173461 + MLT1B LTR MaLR 1 196 -194 2680 52 0 0 chr13 26571437 26571743 -93173155 + AluY SINE Alu 1 306 -5 2302 108 0 0 chr13 26571752 26572059 -93172839 + AluSx SINE Alu 1 307 -5 2124 133 7 83 chr13 26572059 26572286 -93172612 + MLT1B LTR MaLR 204 389 -1 1063 287 123 42 chr13 26572650 26573242 -93171656 + HAL1 LINE L1 16 655 -1852 1298 228 81 54 chr13 26573346 26573850 -93171048 + HAL1 LINE L1 848 1365 -1142 386 253 0 0 chr13 26573852 26573939 -93170959 - L2 LINE L2 0 3313 3227 948 283 42 36 chr13 26573951 26574336 -93170562 - L2 LINE L2 -701 2613 2227 335 23 23 0 chr13 26574647 26574691 -93170207 + (TG)n Simple_repeat Simple_repeat 2 46 0 273 291 67 0 chr13 26574732 26574911 -93169987 - L1M4 LINE L1 -1779 4367 4177 484 132 0 0 chr13 26574912 26574980 -93169918 + Tigger2 DNA MER2_type 1 68 -2650 * 2521 146 31 20 chr13 26574965 26575333 -93169565 + Tigger2 DNA MER2_type 2267 2642 -76 2516 127 2 10 chr13 26575333 26575728 -93169170 + L1MA5A LINE L1 5896 6287 -10 2521 146 31 20 chr13 26575728 26575805 -93169093 + Tigger2 DNA MER2_type 2642 2717 -1 2234 111 3 25 chr13 26576958 26577274 -93167624 + AluSx SINE Alu 1 309 -3 468 269 83 16 chr13 26579113 26579306 -93165592 - MIR SINE MIR -40 222 17 640 154 0 27 chr13 26579483 26579593 -93165305 - MER20 DNA MER1_type 0 219 113 1716 187 19 16 chr13 26579769 26580133 -93164765 - MLT1A1 LTR MaLR 0 365 1 2519 131 26 30 chr13 26580289 26580718 -93164180 + MSTA LTR MaLR 1 427 -1 2606 49 0 7 chr13 26582413 26582718 -93162180 - AluY SINE Alu -8 303 1 8127 120 84 91 chr13 26583558 26585268 -93159630 - pTR5 LTR ERV1 0 2438 741 258 309 151 0 chr13 26585296 26585422 -93159476 - MIR SINE MIR -117 145 1 489 229 210 25 chr13 26586143 26586300 -93158598 + MER5A DNA MER1_type 4 189 0 303 246 29 0 chr13 26586679 26586748 -93158150 - MIR SINE MIR -181 81 11 2303 78 6 38 chr13 26586806 26587125 -93157773 + AluSq SINE Alu 2 310 -3 450 0 0 0 chr13 26587560 26587610 -93157288 + (GA)n Simple_repeat Simple_repeat 1 50 0 494 258 96 12 chr13 26589165 26589332 -93155566 - MIR SINE MIR -74 188 8 1083 137 128 47 chr13 26589382 26589616 -93155282 - ORSL DNA AcHobo 0 275 23 2187 154 158 26 chr13 26589765 26590151 -93154747 - MLT2B2 LTR ERVL 0 515 59 2403 99 0 0 chr13 26590151 26590454 -93154444 + AluSg SINE Alu 1 303 -7 2187 154 158 26 chr13 26590454 26590522 -93154376 - MLT2B2 LTR ERVL -456 59 1 191 319 193 8 chr13 26590671 26590790 -93154108 + MIR SINE MIR 110 250 -12 3259 133 17 17 chr13 26590915 26591448 -93153450 + LTR10A LTR ERV1 13 545 -64 2396 75 7 0 chr13 26592201 26592495 -93152403 - AluY SINE Alu -15 296 1 339 303 37 0 chr13 26592831 26592940 -93151958 - L2 LINE L2 -4 3268 3156 2336 96 3 0 chr13 26592940 26593243 -93151655 - AluSp SINE Alu -9 304 1 1272 226 48 77 chr13 26593243 26593425 -93151473 - HAL1 LINE L1 -540 1967 1781 1548 172 111 0 chr13 26593425 26593600 -93151298 - AluJo SINE Alu -2 310 156 375 23 0 0 chr13 26593600 26593644 -93151254 + (CA)n Simple_repeat Simple_repeat 2 45 0 1548 172 111 0 chr13 26593644 26593747 -93151151 - AluJo SINE Alu -156 156 1 1272 226 48 77 chr13 26593747 26593980 -93150918 - HAL1 LINE L1 -726 1781 1564 482 240 74 50 chr13 26593977 26594312 -93150586 - HAL1 LINE L1 -1482 1025 651 * 1709 162 23 0 chr13 26594313 26594579 -93150319 + AluSx SINE Alu 1 272 -40 1773 128 4 0 chr13 26594581 26594831 -93150067 - AluSx SINE Alu -61 251 1 1016 276 89 31 chr13 26594957 26595373 -93149525 - HAL1 LINE L1 -2046 461 22 286 256 70 0 chr13 26595734 26595820 -93149078 + MIR SINE MIR 110 201 -61 2505 73 0 10 chr13 26596128 26596441 -93148457 - AluY SINE Alu -1 310 1 1899 152 0 7 chr13 26596688 26596984 -93147914 - AluJb SINE Alu -18 294 1 2377 97 0 3 chr13 26597184 26597495 -93147403 - AluSg SINE Alu 0 310 1 706 71 0 0 chr13 26598088 26598186 -93146712 + AluY SINE Alu 205 302 -9 1566 234 34 96 chr13 26598271 26598477 -93146421 + L1ME4a LINE L1 37 254 -6142 2034 136 0 7 chr13 26598477 26598772 -93146126 - AluSx SINE Alu -19 293 1 1566 234 34 96 chr13 26598772 26599041 -93145857 + L1ME4a LINE L1 254 474 -5922 2599 61 0 0 chr13 26599041 26599352 -93145546 - AluY SINE Alu 0 311 1 1566 234 34 96 chr13 26599352 26599436 -93145462 + L1ME4a LINE L1 474 562 -5834 563 274 137 4 chr13 26599431 26599694 -93145204 + L1ME4a LINE L1 1614 1911 -4485 * 2854 235 76 19 chr13 26599694 26600562 -93144336 + L1ME4a LINE L1 2342 3270 -2945 2145 125 0 16 chr13 26600562 26600875 -93144023 - AluSx SINE Alu 0 312 5 2854 235 76 19 chr13 26600875 26600958 -93143940 + L1ME4a LINE L1 3270 3347 -2868 2193 173 116 11 chr13 26601341 26601447 -93143451 - MLT1D LTR MaLR 0 505 412 2153 126 3 0 chr13 26601447 26601749 -93143149 + AluSx SINE Alu 1 303 -9 2193 173 116 11 chr13 26601749 26602099 -93142799 - MLT1D LTR MaLR -93 412 1 2161 133 0 7 chr13 26602583 26602891 -93142007 - AluSg SINE Alu -4 306 1 362 249 148 58 chr13 26602996 26603064 -93141834 + L1ME4a LINE L1 5422 5482 -708 1564 158 32 35 chr13 26603064 26603372 -93141526 + AluJb SINE Alu 1 307 0 362 249 148 58 chr13 26603372 26603647 -93141251 + L1ME4a LINE L1 5482 5797 -393 1983 183 14 6 chr13 26603679 26604034 -93140864 - MLT1A1 LTR MaLR -7 358 1 499 222 15 0 chr13 26604034 26604169 -93140729 + L1ME4a LINE L1 5807 5943 -247 270 0 0 0 chr13 26604216 26604246 -93140652 + (TC)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr13 26604245 26604271 -93140627 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 2287 109 3 0 chr13 26604274 26604578 -93140320 - AluSp SINE Alu -8 305 1 281 222 34 34 chr13 26604831 26604948 -93139950 + (CTATT)n Simple_repeat Simple_repeat 4 120 0 21 0 0 0 chr13 26604961 26604982 -93139916 + AT_rich Low_complexity Low_complexity 1 21 0 748 143 0 9 chr13 26605117 26605229 -93139669 - FLAM_C SINE Alu -26 117 7 233 274 107 24 chr13 26605392 26605476 -93139422 + L2 LINE L2 3195 3285 -28 256 270 40 0 chr13 26605605 26605679 -93139219 + MIR SINE MIR 110 186 -76 190 244 22 0 chr13 26607231 26607276 -93137622 - L2 LINE L2 -6 3307 3262 589 251 22 28 chr13 26607277 26607456 -93137442 - MIR SINE MIR -72 190 13 313 289 128 47 chr13 26609222 26609371 -93135527 - MIR SINE MIR -38 224 64 296 291 128 7 chr13 26610475 26610623 -93134275 - MIR SINE MIR -77 185 20 261 327 223 13 chr13 26610602 26610911 -93133987 + L2 LINE L2 2897 3270 -2 * 401 261 43 9 chr13 26611439 26611554 -93133344 + MIR SINE MIR 32 150 -112 1497 213 80 29 chr13 26611569 26611945 -93132953 - MSTD LTR MaLR -1 395 1 356 314 76 6 chr13 26615099 26615271 -93129627 + MIR SINE MIR 79 262 0 1702 224 47 24 chr13 26615462 26615913 -93128985 - LTR40b LTR ERVL -1 461 1 186 191 0 0 chr13 26616265 26616307 -93128591 + (ATG)n Simple_repeat Simple_repeat 3 44 0 695 247 192 0 chr13 26617066 26617285 -93127613 - MIR SINE MIR 0 262 2 263 237 0 0 chr13 26617442 26617501 -93127397 + MIR SINE MIR 108 166 -96 696 202 8 0 chr13 26617811 26617935 -93126963 + FLAM_C SINE Alu 2 126 -17 34 42 0 0 chr13 26617935 26617983 -93126915 + AT_rich Low_complexity Low_complexity 1 48 0 269 342 58 0 chr13 26620768 26620888 -93124010 - L2 LINE L2 -11 3302 3176 506 253 189 60 chr13 26620978 26621428 -93123470 - MLT1J LTR MaLR -2 509 2 1140 153 62 8 chr13 26621932 26622174 -93122724 + L1MB2 LINE L1 5915 6169 -2 2101 121 0 57 chr13 26622282 26622613 -93122285 + AluSx SINE Alu 1 312 0 422 294 40 0 chr13 26622893 26623019 -93121879 + MIR SINE MIR 16 146 -62 715 148 58 58 chr13 26623073 26623262 -93121636 - MER53 DNA DNA 0 189 1 2435 85 0 7 chr13 26623487 26623792 -93121106 - AluSg SINE Alu -7 303 1 360 0 0 0 chr13 26624098 26624138 -93120760 + (CA)n Simple_repeat Simple_repeat 2 41 0 2144 120 0 20 chr13 26624404 26624731 -93120167 + AluSx SINE Alu 1 312 0 723 258 120 27 chr13 26625506 26625805 -93119093 - L2 LINE L2 0 3313 2987 216 0 0 0 chr13 26626856 26626880 -93118018 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr13 26629281 26629303 -93115595 + GC_rich Low_complexity Low_complexity 1 22 0 206 205 0 0 chr13 26630174 26630213 -93114685 + (CGG)n Simple_repeat Simple_repeat 3 41 0 29 60 0 0 chr13 26631155 26631205 -93113693 + AT_rich Low_complexity Low_complexity 1 50 0 252 59 0 0 chr13 26632149 26632183 -93112715 + (CA)n Simple_repeat Simple_repeat 2 35 0 896 204 14 27 chr13 26632300 26632521 -93112377 - L1MB8 LINE L1 -6 6172 5955 1025 239 56 8 chr13 26632521 26632789 -93112109 - MLT2B3 LTR ERVL 0 554 274 377 293 105 21 chr13 26634212 26634451 -93110447 + MIR SINE MIR 4 262 0 196 305 49 12 chr13 26634452 26634534 -93110364 + L2 LINE L2 3222 3306 -7 1012 156 58 10 chr13 26634732 26634937 -93109961 - MER20 DNA MER1_type -4 215 1 198 0 0 0 chr13 26635408 26635430 -93109468 + (TC)n Simple_repeat Simple_repeat 1 22 0 2162 150 29 0 chr13 26636596 26636975 -93107923 + MLT1B LTR MaLR 1 390 0 412 298 15 15 chr13 26637043 26637174 -93107724 + MIR SINE MIR 20 150 -58 449 266 35 7 chr13 26637663 26637806 -93107092 + LTR67 LTR ERVL 411 557 0 2354 105 3 0 chr13 26637972 26638276 -93106622 - AluSq SINE Alu -8 305 1 848 127 206 0 chr13 26638344 26638509 -93106389 + MSTC LTR MaLR 4 202 -226 1925 97 32 0 chr13 26638516 26638764 -93106134 + AluSx SINE Alu 1 256 -56 419 188 12 0 chr13 26638764 26638849 -93106049 + MSTC LTR MaLR 343 428 0 441 263 111 26 chr13 26639170 26639360 -93105538 - MLT1K LTR MaLR -5 583 378 4211 198 43 19 chr13 26639822 26640809 -93104089 + Charlie1a DNA MER1_type 33 1042 -413 334 234 0 0 chr13 26640810 26640874 -93104024 + AluS SINE Alu 1 64 -239 730 181 27 34 chr13 26640874 26641023 -93103875 - FRAM SINE Alu -18 148 1 249 146 0 0 chr13 26641035 26641076 -93103822 - FRAM SINE Alu -6 4294967287 1 * 1460 158 25 81 chr13 26641076 26641407 -93103491 + Charlie1a DNA MER1_type 1027 1329 -1432 2397 98 7 0 chr13 26641407 26641712 -93103186 - AluSx SINE Alu -5 307 1 1460 158 25 81 chr13 26641712 26641817 -93103081 + Charlie1a DNA MER1_type 1329 1438 -17 738 243 22 11 chr13 26641871 26642056 -93102842 - MIR SINE MIR -59 203 17 2033 135 3 3 chr13 26642463 26642752 -93102146 - AluJo SINE Alu -13 299 11 196 229 229 8 chr13 26643675 26643797 -93101101 + L2 LINE L2 2932 3080 -192 188 298 88 35 chr13 26643901 26644015 -93100883 + L2 LINE L2 3125 3244 -28 2129 163 5 15 chr13 26644794 26645186 -93099712 + MLT1B LTR MaLR 1 388 -2 935 129 29 35 chr13 26645488 26645659 -93099239 + LTR8 LTR ERV1 415 584 -107 286 320 103 20 chr13 26646002 26646302 -93098596 - L2 LINE L2 -360 2954 2630 242 259 71 24 chr13 26646793 26646878 -93098020 - MIR SINE MIR -105 157 69 231 235 0 0 chr13 26647024 26647075 -93097823 + L2 LINE L2 3263 3313 0 1695 168 0 50 chr13 26647198 26647518 -93097380 + AluJo SINE Alu 1 305 0 391 231 122 48 chr13 26647572 26647719 -93097179 - L2 LINE L2 0 3313 3156 1405 153 18 36 chr13 26647786 26648060 -93096838 - Tigger7 DNA MER2_type 0 2587 2319 2230 133 0 0 chr13 26648162 26648464 -93096434 - AluSx SINE Alu -10 302 1 199 399 15 0 chr13 26648464 26648597 -93096301 - L2 LINE L2 -600 2714 2580 546 272 128 41 chr13 26648597 26648917 -93095981 - L2 LINE L2 -679 2635 2288 198 309 161 44 chr13 26649355 26649789 -93095109 - L2 LINE L2 -449 2865 2381 538 164 100 0 chr13 26649857 26649967 -93094931 - MER20 DNA MER1_type 0 219 99 511 293 39 31 chr13 26650057 26650286 -93094612 + MIR SINE MIR 18 248 -14 202 325 48 0 chr13 26650697 26650780 -93094118 - L2 LINE L2 -545 2769 2683 430 268 34 137 chr13 26651003 26651170 -93093728 - L2 LINE L2 0 3313 3195 1818 134 28 14 chr13 26651170 26651454 -93093444 + AluJo SINE Alu 2 289 -23 430 268 34 137 chr13 26651454 26651614 -93093284 - L2 LINE L2 -118 3195 3020 2202 124 0 23 chr13 26651971 26652278 -93092620 + AluSx SINE Alu 1 300 -12 362 261 176 21 chr13 26652362 26652550 -93092348 + L2 LINE L2 2820 3036 -236 224 328 128 8 chr13 26652769 26652894 -93092004 - L2 LINE L2 -681 2633 2494 378 287 17 46 chr13 26653063 26653237 -93091661 - MIR3 SINE MIR -26 182 14 1374 145 19 9 chr13 26653250 26653464 -93091434 + AluJb SINE Alu 85 300 -12 217 279 39 78 chr13 26654196 26654325 -93090573 - L2 LINE L2 -1 3271 3148 1842 154 0 50 chr13 26654389 26654738 -93090160 - AluSx SINE Alu 0 335 2 508 201 272 0 chr13 26654938 26655107 -93089791 - MLT1K LTR MaLR 0 588 374 2259 124 3 0 chr13 26655490 26655797 -93089101 - AluSp SINE Alu -5 308 1 272 290 130 0 chr13 26656090 26656228 -93088670 + MIR SINE MIR 89 244 -18 208 0 62 0 chr13 26656878 26656910 -93087988 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr13 26663860 26663881 -93081017 + AT_rich Low_complexity Low_complexity 1 21 0 321 324 139 21 chr13 26664182 26664614 -93080284 + L2 LINE L2 2454 2936 -378 890 65 0 0 chr13 26665149 26665256 -93079642 + U6 snRNA snRNA 1 107 0 21 57 0 0 chr13 26666530 26666565 -93078333 + GC_rich Low_complexity Low_complexity 1 35 0 368 241 86 17 chr13 26667101 26667217 -93077681 - MIR3 SINE MIR 0 208 85 501 265 26 79 chr13 26667374 26667690 -93077208 - L1ME4a LINE L1 -94 6027 5733 2304 109 0 0 chr13 26667690 26667992 -93076906 - AluSx SINE Alu -10 302 1 501 265 26 79 chr13 26667992 26668053 -93076845 - L1ME4a LINE L1 -388 5733 5670 454 311 57 0 chr13 26668113 26668306 -93076592 + MIR SINE MIR 48 251 -11 3838 136 44 6 chr13 26668579 26669239 -93075659 + L1MB3 LINE L1 5497 6181 -2 612 253 31 39 chr13 26670072 26670301 -93074597 - MIR SINE MIR 0 262 36 190 281 50 58 chr13 26670414 26670535 -93074363 + L2 LINE L2 3169 3288 -25 433 216 69 9 chr13 26670624 26670740 -93074158 + MIR SINE MIR 2 124 -138 2055 116 28 54 chr13 26670769 26670900 -93073998 + MER2 DNA MER2_type 1 134 -210 2132 100 7 0 chr13 26670900 26671215 -93073683 - AluSq SINE Alu 0 317 1 2055 116 28 54 chr13 26671215 26671435 -93073463 + MER2 DNA MER2_type 134 344 0 2009 156 38 6 chr13 26671435 26671775 -93073123 + Tigger3(Golem) DNA MER2_type 2 352 -2677 764 147 7 0 chr13 26671782 26671918 -93072980 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 355 268 21 0 chr13 26671919 26672016 -93072882 + MIR SINE MIR 164 262 0 1503 203 25 6 chr13 26672275 26672590 -93072308 - L1MD1 LINE L1 0 6242 5922 2439 87 0 0 chr13 26672642 26672951 -93071947 - AluY SINE Alu -2 309 1 2413 186 31 10 chr13 26673045 26673566 -93071332 + Charlie1 DNA MER1_type 2143 2674 -87 3212 200 50 37 chr13 26673572 26674621 -93070277 - L1MD1 LINE L1 -424 5935 4901 2028 157 81 8 chr13 26674621 26674990 -93069908 + MSTD LTR MaLR 1 396 0 3212 200 50 37 chr13 26674990 26675149 -93069749 - L1MD1 LINE L1 -1458 4901 4709 1595 168 15 25 chr13 26675149 26675423 -93069475 - AluJo SINE Alu -41 271 1 3212 200 50 37 chr13 26675423 26675520 -93069378 - L1MD1 LINE L1 -1650 4709 4615 2329 58 0 4 chr13 26675589 26675866 -93069032 + AluY SINE Alu 1 276 -35 531 0 0 0 chr13 26675869 26675928 -93068970 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 264 310 11 23 chr13 26675996 26676083 -93068815 + L2 LINE L2 3225 3310 -3 253 331 25 0 chr13 26677195 26677358 -93067540 + L2 LINE L2 2053 2219 -1095 2251 246 63 17 chr13 26677811 26678621 -93066277 + L1MB7 LINE L1 2342 3188 -2958 3621 167 55 43 chr13 26678622 26679430 -93065468 + L1MB7 LINE L1 4858 5676 -508 1884 174 0 6 chr13 26679430 26679606 -93065292 - AluJo SINE Alu -3 309 134 2224 128 0 0 chr13 26679606 26679910 -93064988 - AluSx SINE Alu -8 304 1 1884 174 0 6 chr13 26679910 26680044 -93064854 - AluJo SINE Alu -178 134 1 3621 167 55 43 chr13 26680044 26680402 -93064496 + L1MB7 LINE L1 5676 6028 -156 768 207 30 0 chr13 26680471 26680640 -93064258 + L1ME1 LINE L1 3788 3961 -2185 * 1387 220 140 12 chr13 26680637 26681037 -93063861 + L1ME1 LINE L1 5711 6161 -5 2313 59 0 10 chr13 26681063 26681351 -93063547 + AluY SINE Alu 27 311 0 501 138 73 16 chr13 26681356 26681479 -93063419 + MER69 DNA AcHobo 2250 2379 -147 525 299 136 37 chr13 26681528 26682154 -93062744 + L2 LINE L2 2100 2787 -527 1020 234 58 74 chr13 26682685 26682774 -93062124 - L1MDa LINE L1 -5230 1310 1221 2089 107 10 17 chr13 26682774 26683072 -93061826 + AluSx SINE Alu 1 296 -16 1020 234 58 74 chr13 26683072 26683346 -93061552 - L1MDa LINE L1 -5319 1221 953 464 121 264 0 chr13 26684222 26684313 -93060585 + FLAM_A SINE Alu 9 123 -19 421 281 124 28 chr13 26684313 26684491 -93060407 + L1MC/D LINE L1 5563 5757 -2051 1901 182 0 3 chr13 26685049 26685362 -93059536 - AluJb SINE Alu 0 312 1 6472 116 19 2 chr13 26685581 26687017 -93057881 + L1PB2 LINE L1 4689 6146 -5 25 0 0 0 chr13 26687018 26687043 -93057855 + AT_rich Low_complexity Low_complexity 1 25 0 267 248 63 109 chr13 26687295 26687467 -93057431 + MER5A DNA MER1_type 11 186 -3 567 242 0 19 chr13 26688663 26688820 -93056078 - MIR SINE MIR -90 172 19 811 219 28 0 chr13 26688993 26689171 -93055727 - MER5A DNA MER1_type -6 183 1 1433 248 127 29 chr13 26690702 26691476 -93053422 - L1ME3A LINE L1 -1 6169 5281 624 177 146 12 chr13 26691591 26691755 -93053143 - MIR SINE MIR -46 216 31 3890 100 62 79 chr13 26692651 26693342 -93051556 - LTR1 LTR ERV1 -4 781 102 2341 106 0 0 chr13 26693342 26693645 -93051253 + AluSg SINE Alu 1 303 -7 3890 100 62 79 chr13 26693645 26693685 -93051213 - LTR1 LTR ERV1 -683 102 63 717 174 0 0 chr13 26695090 26695211 -93049687 + FLAM_C SINE Alu 23 143 0 805 213 0 0 chr13 26695262 26695403 -93049495 + AluSg/x SINE Alu 156 296 -16 261 306 110 38 chr13 26695617 26695934 -93048964 - L2 LINE L2 -787 2527 2188 810 145 0 30 chr13 26695968 26696099 -93048799 + FLAM_C SINE Alu 1 127 -16 275 312 172 14 chr13 26696584 26696799 -93048099 - MLT1K LTR MaLR -158 430 182 247 213 88 25 chr13 26696856 26696936 -93047962 + LTR33 LTR ERVL 3 87 -434 408 141 0 0 chr13 26696944 26697015 -93047883 + Alu SINE Alu 240 310 -2 1351 142 32 20 chr13 26697015 26697292 -93047606 - L1MA4 LINE L1 -179 6121 5841 228 194 0 75 chr13 26697403 26697470 -93047428 - HAL1 LINE L1 -2141 366 305 297 0 0 0 chr13 26697589 26697622 -93047276 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 569 283 84 22 chr13 26698051 26698277 -93046621 - LTR33 LTR ERVL -183 338 99 1302 149 20 0 chr13 26698279 26698474 -93046424 - AluJb SINE Alu -113 199 1 899 96 144 12 chr13 26698474 26698641 -93046257 + L1MA4 LINE L1 6112 6300 0 594 233 222 11 chr13 26698926 26699106 -93045792 - MLT1G1 LTR MaLR 0 595 378 360 264 44 11 chr13 26699096 26699187 -93045711 - MLT1G1 LTR MaLR -296 234 141 * 673 113 8 89 chr13 26699187 26699311 -93045587 + AluJb SINE Alu 3 116 -196 254 135 39 0 chr13 26699312 26699364 -93045534 + GA-rich Low_complexity Low_complexity 3 56 0 2787 256 117 64 chr13 26699536 26700436 -93044462 + HAL1 LINE L1 68 1080 -1427 1565 189 0 43 chr13 26700436 26700759 -93044139 - AluJo SINE Alu -3 309 1 2787 256 117 64 chr13 26700759 26701360 -93043538 + HAL1 LINE L1 1080 1648 -859 762 242 119 52 chr13 26701523 26701627 -93043271 + HAL1 LINE L1 2142 2238 -269 828 288 11 30 chr13 26701627 26701787 -93043111 + MIR SINE MIR 1 157 -105 2182 120 0 0 chr13 26701787 26702111 -93042787 + AluSx SINE Alu 1 324 0 828 288 11 30 chr13 26702111 26702216 -93042682 + MIR SINE MIR 157 262 0 762 242 119 52 chr13 26702216 26702454 -93042444 + HAL1 LINE L1 2238 2507 0 1560 151 121 0 chr13 26702943 26703208 -93041690 - AluJo SINE Alu -14 298 2 2316 93 7 0 chr13 26703347 26703636 -93041262 + AluSg SINE Alu 1 291 -19 439 306 62 59 chr13 26703684 26704311 -93040587 + L1MEd LINE L1 821 1551 -939 340 276 29 77 chr13 26704317 26704487 -93040411 - MIR SINE MIR -99 163 2 239 306 81 0 chr13 26704574 26704685 -93040213 + L1ME LINE L1 5752 5871 -299 764 167 0 0 chr13 26706663 26706783 -93038115 - FLAM_C SINE Alu -18 125 6 350 283 44 76 chr13 26706879 26707027 -93037871 - L1ME LINE L1 -505 5616 5465 2304 79 17 0 chr13 26707027 26707319 -93037579 + AluSp SINE Alu 1 297 -16 350 283 44 76 chr13 26707319 26707377 -93037521 - L1ME LINE L1 -656 5465 5407 213 39 0 0 chr13 26707377 26707403 -93037495 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1342 168 45 63 chr13 26707406 26707692 -93037206 - AluJo SINE Alu -31 281 1 350 283 44 76 chr13 26707692 26707858 -93037040 - L1ME LINE L1 -716 5405 5255 391 293 85 49 chr13 26707886 26708516 -93036382 - L1ME LINE L1 -980 5166 4494 2171 117 24 3 chr13 26708516 26708814 -93036084 - AluJb SINE Alu -8 304 1 391 293 85 49 chr13 26708814 26708897 -93036001 - L1ME LINE L1 -1652 4494 4415 2883 13 0 0 chr13 26708899 26709210 -93035688 - AluY SINE Alu 0 311 1 237 316 162 18 chr13 26709287 26709559 -93035339 - L1ME LINE L1 -428 5693 5383 1992 242 78 46 chr13 26709686 26710375 -93034523 + MER20B DNA MER1_type 54 764 -19 391 241 47 78 chr13 26710376 26710458 -93034440 + L1MD2 LINE L1 3768 3851 -2295 2425 96 0 13 chr13 26710458 26710772 -93034126 + AluSx SINE Alu 1 310 -2 391 241 47 78 chr13 26710772 26710921 -93033977 + L1MD2 LINE L1 3851 3992 -2154 217 159 0 23 chr13 26710937 26710981 -93033917 + T-rich Low_complexity Low_complexity 1 43 0 2992 39 0 0 chr13 26710988 26711326 -93033572 - L1PA4 LINE L1 -3 6152 5815 1449 179 46 28 chr13 26711326 26711722 -93033176 + MER74A LTR ERVL 19 473 -85 26 0 0 0 chr13 26711743 26711769 -93033129 + AT_rich Low_complexity Low_complexity 1 26 0 870 213 66 10 chr13 26711799 26711996 -93032902 - AluJo SINE Alu -104 208 1 416 183 12 0 chr13 26711996 26712078 -93032820 + MER74A LTR ERVL 475 557 -1 659 313 23 10 chr13 26712101 26712408 -93032490 + L1MD2 LINE L1 4015 4325 -1821 4224 218 77 45 chr13 26712432 26712480 -93032418 + L1MCb LINE L1 1 46 -6241 207 0 0 0 chr13 26712480 26712503 -93032395 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 4224 218 77 45 chr13 26712503 26713313 -93031585 + L1MCb LINE L1 46 1077 -5210 2221 95 0 3 chr13 26713313 26713638 -93031260 + AluSq SINE Alu 2 325 0 4224 218 77 45 chr13 26713638 26714013 -93030885 + L1MCb LINE L1 1077 1439 -4848 2874 226 115 123 chr13 26714017 26715429 -93029469 + L1MC4a LINE L1 5814 7207 -601 2339 182 9 16 chr13 26715429 26715596 -93029302 + L1MB3 LINE L1 5741 5908 -275 1620 138 45 67 chr13 26715596 26715908 -93028990 + AluJb SINE Alu 2 306 -6 2339 182 9 16 chr13 26715908 26716184 -93028714 + L1MB3 LINE L1 5908 6181 -2 2874 226 115 123 chr13 26716184 26716687 -93028211 + L1MC4a LINE L1 7207 7713 -95 347 175 0 88 chr13 26716754 26716834 -93028064 + L1MC4 LINE L1 7840 7912 -130 230 274 0 0 chr13 26716840 26716891 -93028007 + L2 LINE L2 3221 3271 -1 595 298 76 42 chr13 26717837 26718270 -93026628 + MLT1K LTR MaLR 139 586 -2 181 286 60 75 chr13 26718583 26718716 -93026182 - L2 LINE L2 -995 2319 2189 785 257 23 34 chr13 26718728 26718993 -93025905 - MIR SINE MIR 0 262 1 367 276 0 0 chr13 26719267 26719343 -93025555 + MLT1J1 LTR MaLR 243 318 -128 235 297 55 16 chr13 26719548 26719730 -93025168 + HAL1 LINE L1 1115 1303 -1204 331 335 83 4 chr13 26719773 26720039 -93024859 + HAL1 LINE L1 1372 1658 -849 1778 171 0 17 chr13 26720586 26720873 -93024025 + AluJo SINE Alu 1 282 -30 2687 247 15 15 chr13 26721130 26721871 -93023027 + L1MD2 LINE L1 4462 5202 -944 789 200 0 0 chr13 26721871 26721991 -93022907 + FLAM_A SINE Alu 1 120 -13 1354 165 14 98 chr13 26721999 26722296 -93022602 + AluJo SINE Alu 24 295 -17 46 54 0 0 chr13 26722296 26722370 -93022528 + AT_rich Low_complexity Low_complexity 1 74 0 1982 123 89 17 chr13 26722370 26722719 -93022179 - THE1C LTR MaLR 0 375 2 318 26 0 0 chr13 26722721 26722760 -93022138 + (TG)n Simple_repeat Simple_repeat 2 40 0 3853 191 83 67 chr13 26722776 26722988 -93021910 + L1MD2 LINE L1 5188 5395 -964 1910 161 3 3 chr13 26722988 26723298 -93021600 + AluSx SINE Alu 1 310 -2 3853 191 83 67 chr13 26723298 26723890 -93021008 + L1MD2 LINE L1 5395 6021 -338 2724 141 28 28 chr13 26723890 26724120 -93020778 + L1PA16 LINE L1 5704 5933 -233 1981 147 0 7 chr13 26724120 26724420 -93020478 + AluJb SINE Alu 1 298 -14 2724 141 28 28 chr13 26724420 26724650 -93020248 + L1PA16 LINE L1 5932 6164 -2 3853 191 83 67 chr13 26724650 26724959 -93019939 + L1MD2 LINE L1 6021 6323 -36 21 36 0 0 chr13 26725045 26725073 -93019825 + AT_rich Low_complexity Low_complexity 1 28 0 1748 126 115 0 chr13 26725166 26725469 -93019429 + AluSx SINE Alu 1 312 0 560 307 72 81 chr13 26725765 26726319 -93018579 + LTR67 LTR ERVL 2 550 -7 10928 216 38 16 chr13 26726451 26730156 -93014742 - L1MB4 LINE L1 -100 6080 2293 1690 182 10 17 chr13 26730347 26730638 -93014260 - AluJo SINE Alu -23 289 1 1045 133 22 22 chr13 26731203 26731384 -93013514 + AluSc SINE Alu 126 306 -3 1292 177 55 20 chr13 26731582 26731836 -93013062 - L1MD2 LINE L1 -199 6160 5898 1535 229 33 35 chr13 26731837 26731856 -93013042 - L1MDb LINE L1 -3518 2888 2870 2244 99 7 7 chr13 26731856 26732158 -93012740 - AluSq SINE Alu -11 302 1 1535 229 33 35 chr13 26732158 26732657 -93012241 - L1MDb LINE L1 -3536 2870 2371 791 208 65 6 chr13 26732657 26732825 -93012073 - AluJo SINE Alu -13 299 122 580 219 39 19 chr13 26732826 26733031 -93011867 - L1MDb LINE L1 -4043 2363 2155 1012 203 14 14 chr13 26733031 26733248 -93011650 - AluJo SINE Alu -5 307 91 2298 185 68 6 chr13 26733265 26733767 -93011131 + L1MDa LINE L1 1583 2115 -4425 898 108 23 0 chr13 26733786 26733915 -93010983 - FRAM SINE Alu -19 157 26 3676 212 81 46 chr13 26733919 26734072 -93010826 - L1MDb LINE L1 -4246 2160 2014 1852 175 3 0 chr13 26734072 26734375 -93010523 + AluJo SINE Alu 4 307 -5 3676 212 81 46 chr13 26734375 26736228 -93008670 - L1MDb LINE L1 -4392 2014 25 548 331 6 0 chr13 26736238 26736401 -93008497 - LTR33 LTR ERVL -357 164 1 2223 90 0 33 chr13 26736484 26736785 -93008113 - AluSg1 SINE Alu -18 291 1 2168 123 0 16 chr13 26737106 26737422 -93007476 + AluSx SINE Alu 1 311 -1 207 290 0 0 chr13 26737526 26737588 -93007310 + A-rich Low_complexity Low_complexity 1 62 0 188 258 76 45 chr13 26738022 26738088 -93006810 + L2 LINE L2 3173 3240 -32 788 71 35 14 chr13 26738098 26738239 -93006659 + (GAAA)n Simple_repeat Simple_repeat 3 146 0 226 132 105 0 chr13 26738256 26738294 -93006604 - L2 LINE L2 -10 3262 3221 208 143 0 0 chr13 26738322 26738357 -93006541 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2149 79 68 0 chr13 26739247 26739525 -93005373 - AluSp SINE Alu -16 297 1 508 132 0 13 chr13 26740248 26740324 -93004574 - FLAM_A SINE Alu -25 117 43 3660 73 30 0 chr13 26740541 26740585 -93004313 - MLT2A2 LTR ERVL 0 453 412 505 0 31 0 chr13 26740585 26740650 -93004248 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3660 73 30 0 chr13 26740650 26741045 -93003853 - MLT2A2 LTR ERVL -41 412 1 466 330 34 21 chr13 26741315 26741554 -93003344 + MIR SINE MIR 20 261 -1 1081 143 53 11 chr13 26742232 26742421 -93002477 + L1MB2 LINE L1 5971 6167 -4 203 317 163 57 chr13 26742615 26742738 -93002160 + L2 LINE L2 3136 3271 -1 513 198 32 226 chr13 26742750 26742829 -93002069 - MIR SINE MIR -33 229 136 1451 199 10 27 chr13 26742829 26742988 -93001910 - AluJo SINE Alu -20 292 139 2435 49 7 20 chr13 26742988 26743293 -93001605 - AluY SINE Alu -10 301 1 1451 199 10 27 chr13 26743293 26743430 -93001468 - AluJo SINE Alu -173 139 1 513 198 32 226 chr13 26743430 26743633 -93001265 - MIR SINE MIR -126 136 2 631 77 62 26 chr13 26743852 26744168 -93000730 + (TG)n Simple_repeat Simple_repeat 1 327 0 370 258 67 33 chr13 26744168 26744288 -93000610 + L2 LINE L2 3165 3288 -25 244 235 0 20 chr13 26744851 26744902 -92999996 - MER2 DNA MER2_type 0 345 296 314 229 0 0 chr13 26744906 26744967 -92999931 + MER2 DNA MER2_type 282 342 -3 4186 106 7 0 chr13 26746286 26746836 -92998062 - MER41A LTR ERV1 0 554 1 2420 96 0 0 chr13 26747356 26747658 -92997240 - AluSx SINE Alu -10 302 1 25 0 0 0 chr13 26747993 26748018 -92996880 + AT_rich Low_complexity Low_complexity 1 25 0 1731 151 0 35 chr13 26748620 26748904 -92995994 + AluJo SINE Alu 11 284 -28 191 308 56 19 chr13 26749006 26749113 -92995785 - MIR SINE MIR -6 256 146 2123 138 0 6 chr13 26749232 26749544 -92995354 + AluSg SINE Alu 1 310 0 319 284 43 50 chr13 26749564 26749705 -92995193 - MER5A DNA MER1_type -48 141 2 209 206 176 0 chr13 26750776 26750844 -92994054 - MIR SINE MIR -12 250 171 2304 104 3 0 chr13 26750929 26751236 -92993662 + AluSx SINE Alu 1 308 -4 2001 131 28 0 chr13 26751236 26751527 -92993371 + AluSx SINE Alu 3 301 -11 569 258 30 0 chr13 26751527 26751659 -92993239 + MIR SINE MIR 38 173 -89 340 289 39 0 chr13 26751733 26751837 -92993061 - MIR SINE MIR -92 170 63 24 0 0 0 chr13 26752834 26752858 -92992040 + AT_rich Low_complexity Low_complexity 1 24 0 2340 61 0 14 chr13 26752858 26753154 -92991744 - AluY SINE Alu -19 292 1 195 42 0 0 chr13 26753993 26754017 -92990881 + (TAA)n Simple_repeat Simple_repeat 1 24 0 207 69 0 0 chr13 26755018 26755047 -92989851 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 204 40 0 0 chr13 26756662 26756687 -92988211 + (CAG)n Simple_repeat Simple_repeat 2 26 0 2402 65 3 0 chr13 26758421 26758715 -92986183 - AluSg SINE Alu -15 295 1 372 274 63 0 chr13 26759107 26759202 -92985696 + MIR3 SINE MIR 76 176 -32 1648 158 87 4 chr13 26760512 26760778 -92984120 - AluJo SINE Alu -24 288 1 2015 130 3 0 chr13 26762508 26762807 -92982091 + AluSx SINE Alu 3 302 -10 933 138 119 0 chr13 26763122 26763281 -92981617 - AluSg/x SINE Alu -5 305 128 264 263 53 0 chr13 26763340 26763416 -92981482 + MIR SINE MIR 68 147 -115 2360 93 0 13 chr13 26763861 26764161 -92980737 - AluSq SINE Alu -17 296 1 2374 67 17 3 chr13 26764745 26765044 -92979854 - AluY SINE Alu -8 303 1 305 236 16 16 chr13 26765083 26765206 -92979692 + (TA)n Simple_repeat Simple_repeat 2 124 0 21 36 0 0 chr13 26765976 26766004 -92978894 + AT_rich Low_complexity Low_complexity 1 28 0 2367 104 3 0 chr13 26766203 26766567 -92978331 - AluSg SINE Alu 0 365 1 225 263 53 0 chr13 26766660 26766736 -92978162 - MIR SINE MIR -115 147 68 23 0 0 0 chr13 26767835 26767858 -92977040 + GC_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr13 26770032 26770063 -92974835 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 26770943 26770972 -92973926 + GC_rich Low_complexity Low_complexity 1 29 0 503 240 49 67 chr13 26774306 26774531 -92970367 - MER112 DNA MER1_type -12 248 28 357 268 174 21 chr13 26775262 26775452 -92969446 - L2 LINE L2 -234 3038 2820 429 149 0 81 chr13 26775536 26775623 -92969275 - AluSg/x SINE Alu -12 297 218 33 25 0 0 chr13 26775625 26775665 -92969233 + AT_rich Low_complexity Low_complexity 1 40 0 1895 81 107 11 chr13 26775706 26775978 -92968920 + AluSx SINE Alu 1 298 -14 42 20 0 0 chr13 26776002 26776051 -92968847 + AT_rich Low_complexity Low_complexity 1 49 0 1287 263 37 34 chr13 26776190 26776597 -92968301 + MLT1E2 LTR MaLR 1 408 -218 255 218 21 127 chr13 26776600 26776662 -92968236 + MLT1E2 LTR MaLR 528 540 -86 6863 57 0 1 chr13 26776662 26777787 -92967111 + L1PA6 LINE L1 5030 6154 0 255 218 21 127 chr13 26777787 26777866 -92967032 + MLT1E2 LTR MaLR 540 626 0 610 271 58 34 chr13 26777870 26778077 -92966821 - MLT1J LTR MaLR -292 219 8 2195 117 3 7 chr13 26778119 26778417 -92966481 + AluSx SINE Alu 1 297 -15 320 324 49 14 chr13 26778703 26778845 -92966053 + MIR SINE MIR 49 195 -67 761 253 61 0 chr13 26778960 26779205 -92965693 - MER112 DNA MER1_type 0 260 1 2138 104 11 0 chr13 26779424 26779735 -92965163 - AluY SINE Alu 0 314 1 809 240 161 5 chr13 26779736 26780211 -92964687 + LTR50 LTR ERVL 7 653 -142 1455 95 41 0 chr13 26780212 26780433 -92964465 - MER30 DNA MER1_type 0 230 1 310 264 179 0 chr13 26780543 26780649 -92964249 + AluJo SINE Alu 8 132 -170 520 242 0 64 chr13 26780789 26780946 -92963952 + MLT1F LTR MaLR 1 147 -395 1074 169 17 6 chr13 26780951 26781128 -92963770 - AluJ SINE Alu -14 298 120 853 168 0 0 chr13 26781230 26781355 -92963543 - AluJ SINE Alu -187 125 1 343 224 276 8 chr13 26781577 26781711 -92963187 + MLT1H LTR MaLR 376 545 -4 253 234 0 0 chr13 26781863 26781927 -92962971 - LTR33A LTR ERVL -2 521 458 990 205 0 0 chr13 26782233 26782404 -92962494 + AluJo SINE Alu 136 306 -6 280 270 72 40 chr13 26783533 26783685 -92961213 + L1ME4a LINE L1 5964 6120 -1 2489 74 0 3 chr13 26783691 26784001 -92960897 + AluY SINE Alu 1 309 -2 22 35 0 0 chr13 26784050 26784079 -92960819 + AT_rich Low_complexity Low_complexity 1 29 0 232 310 83 66 chr13 26784490 26784838 -92960060 - L2 LINE L2 -5 3267 2914 282 197 33 0 chr13 26784865 26784926 -92959972 - MLT1D LTR MaLR 0 505 443 2286 112 0 10 chr13 26785047 26785350 -92959548 + AluSq SINE Alu 1 300 -13 676 155 119 68 chr13 26785734 26785924 -92958974 + MLT1D LTR MaLR 308 533 -9 402 364 12 8 chr13 26786068 26786310 -92958588 + MLT1D-int LTR MaLR 290 532 -839 704 211 17 42 chr13 26786858 26787122 -92957776 - AluSg1 SINE Alu 0 307 50 1880 104 0 0 chr13 26787233 26787473 -92957425 - AluSg1 SINE Alu -69 240 1 1021 278 90 24 chr13 26787955 26788483 -92956415 + MLT1G LTR MaLR 3 555 0 1130 216 95 0 chr13 26788487 26788760 -92956138 - MLT1D LTR MaLR 0 505 207 300 102 0 0 chr13 26788765 26788814 -92956084 + (TG)n Simple_repeat Simple_repeat 1 49 0 362 258 0 72 chr13 26788843 26788883 -92956015 - MLT1D LTR MaLR -269 236 195 252 0 0 0 chr13 26788883 26788911 -92955987 + (TA)n Simple_repeat Simple_repeat 1 28 0 2109 126 3 0 chr13 26788912 26789198 -92955700 - AluSq SINE Alu -12 301 15 362 258 0 72 chr13 26789198 26789287 -92955611 - MLT1D LTR MaLR -310 195 117 1869 179 0 0 chr13 26789287 26789583 -92955315 - AluJb SINE Alu -16 296 1 362 258 0 72 chr13 26789583 26789617 -92955281 - MLT1D LTR MaLR -388 117 82 186 143 0 0 chr13 26789627 26789662 -92955236 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 339 238 25 12 chr13 26789664 26789744 -92955154 - MLT1D LTR MaLR -422 83 3 416 255 39 13 chr13 26789767 26789920 -92954978 - L1ME4a LINE L1 -209 5912 5756 691 185 0 20 chr13 26789925 26790071 -92954827 - L1PA16 LINE L1 0 6166 6024 21 0 0 0 chr13 26790333 26790354 -92954544 + GC_rich Low_complexity Low_complexity 1 21 0 823 185 6 6 chr13 26791014 26791369 -92953529 + CT-rich Low_complexity Low_complexity 1 355 0 189 130 19 37 chr13 26791381 26791435 -92953463 + CT-rich Low_complexity Low_complexity 2 54 0 194 0 0 37 chr13 26792072 26792099 -92952799 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 959 91 8 0 chr13 26792143 26792264 -92952634 - AluSg/x SINE Alu -108 202 81 180 0 0 0 chr13 26792886 26792906 -92951992 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 477 335 61 22 chr13 26793013 26793243 -92951655 + MIR SINE MIR 24 262 0 292 291 215 12 chr13 26793816 26793988 -92950910 + MIR SINE MIR 20 226 -36 1144 158 19 10 chr13 26795873 26796082 -92948816 - 7SLRNA srpRNA srpRNA -93 227 17 705 183 16 0 chr13 26796752 26796878 -92948020 + FLAM_A SINE Alu 2 129 -4 900 146 0 6 chr13 26797221 26797581 -92947317 + (TATATG)n Simple_repeat Simple_repeat 3 536 0 706 208 69 135 chr13 26797615 26797764 -92947134 + MIR SINE MIR 2 126 -136 2541 93 0 0 chr13 26797764 26798076 -92946822 + AluSx SINE Alu 1 312 0 706 208 69 135 chr13 26798076 26798200 -92946698 + MIR SINE MIR 126 257 -5 230 162 0 44 chr13 26799080 26799148 -92945750 + L1MB8 LINE L1 6108 6172 -6 623 239 6 80 chr13 26799345 26799521 -92945377 + FRAM SINE Alu 1 163 -13 2024 130 40 0 chr13 26799522 26799821 -92945077 + AluSq SINE Alu 2 312 -1 1089 162 162 59 chr13 26799850 26800121 -92944777 + AluJo SINE Alu 1 299 -3 319 332 91 15 chr13 26800384 26800583 -92944315 + MIR SINE MIR 35 248 -14 1708 164 31 0 chr13 26800586 26800903 -92943995 + L1MB3 LINE L1 5854 6180 -3 3274 181 96 48 chr13 26801384 26802839 -92942059 - MER52A LTR ERV1 -1 1754 1 665 269 35 15 chr13 26802992 26803193 -92941705 - MIR SINE MIR -46 216 12 1202 181 0 5 chr13 26803333 26803526 -92941372 + AluJo SINE Alu 1 192 -120 186 43 0 0 chr13 26804644 26804667 -92940231 + (CTG)n Simple_repeat Simple_repeat 3 25 0 2051 110 11 4 chr13 26805474 26805755 -92939143 + AluSq SINE Alu 1 283 -30 1736 168 30 17 chr13 26805786 26806084 -92938814 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr13 26809957 26809985 -92934913 + GC_rich Low_complexity Low_complexity 1 28 0 910 206 4 69 chr13 26812483 26812716 -92932182 - MIR SINE MIR -3 259 42 443 188 0 0 chr13 26812871 26812951 -92931947 + L1MA7 LINE L1 6060 6139 -152 906 110 17 0 chr13 26813058 26813231 -92931667 + (TA)n Simple_repeat Simple_repeat 1 176 0 200 176 0 0 chr13 26813235 26813269 -92931629 + (CA)n Simple_repeat Simple_repeat 1 34 0 319 279 140 0 chr13 26813358 26813494 -92931404 - MIR SINE MIR -13 249 95 2202 199 5 95 chr13 26814069 26814216 -92930682 - L1MA5 LINE L1 0 6300 6141 2105 104 0 3 chr13 26814216 26814505 -92930393 - AluSx SINE Alu -24 288 1 2202 199 5 95 chr13 26814505 26814898 -92930000 - L1MA5 LINE L1 -159 6141 5819 2002 131 0 0 chr13 26814898 26815189 -92929709 + AluSq SINE Alu 11 301 -12 2202 199 5 95 chr13 26815189 26815259 -92929639 - L1MA5 LINE L1 -481 5819 5744 2023 118 21 0 chr13 26815369 26815658 -92929240 + AluSx SINE Alu 3 297 -15 484 322 59 7 chr13 26815970 26816270 -92928628 - L1MC/D LINE L1 -482 5639 5318 765 186 0 0 chr13 26816292 26816416 -92928482 + AluJo SINE Alu 2 125 -187 333 0 0 0 chr13 26816621 26816658 -92928240 + (TG)n Simple_repeat Simple_repeat 2 38 0 1864 128 26 26 chr13 26817045 26817357 -92927541 - AluSx SINE Alu 0 312 1 2094 108 0 26 chr13 26817886 26818191 -92926707 + AluSg SINE Alu 1 297 -13 784 218 0 50 chr13 26818191 26818359 -92926539 + AluJo SINE Alu 126 286 -26 1849 110 22 0 chr13 26818414 26818716 -92926182 + AluSq SINE Alu 11 318 0 426 310 57 38 chr13 26818991 26819149 -92925749 + MIR SINE MIR 50 210 -52 1257 183 30 33 chr13 26819172 26819472 -92925426 - AluJo SINE Alu -13 299 1 2015 116 3 13 chr13 26820011 26820322 -92924576 - AluSq SINE Alu -5 308 1 862 221 5 0 chr13 26820512 26820702 -92924196 - AluJo SINE Alu -4 308 118 1565 188 0 14 chr13 26821116 26821404 -92923494 - AluJb SINE Alu -28 284 1 396 304 0 0 chr13 26821662 26821754 -92923144 - L2 LINE L2 -6 3266 3175 478 288 26 79 chr13 26871965 26872232 -92872666 - L2 LINE L2 -348 2966 2714 662 240 51 51 chr13 26872237 26872433 -92872465 + MER20 DNA MER1_type 24 219 0 865 232 11 5 chr13 26872440 26872630 -92872268 - L2 LINE L2 -603 2711 2521 2198 117 3 0 chr13 26872630 26872928 -92871970 + AluSg SINE Alu 1 299 -11 258 314 39 101 chr13 26873098 26873305 -92871593 + L2 LINE L2 328 521 -2793 1968 125 55 0 chr13 26873316 26873444 -92871454 + AluSx SINE Alu 1 120 -192 2318 103 3 0 chr13 26873444 26873744 -92871154 + AluSq SINE Alu 1 301 -12 1968 125 55 0 chr13 26873744 26873904 -92870994 + AluSx SINE Alu 120 305 -7 268 250 109 83 chr13 26873939 26874140 -92870758 - L1ME4a LINE L1 -59 6062 5868 2238 68 0 48 chr13 26874140 26874472 -92870426 + AluY SINE Alu 1 318 0 2325 108 0 0 chr13 26874473 26874770 -92870128 + AluSx SINE Alu 1 297 -15 268 250 109 83 chr13 26874770 26874877 -92870021 - L1ME4a LINE L1 -252 5869 5743 2096 115 30 0 chr13 26874892 26875188 -92869710 - AluSp SINE Alu -7 306 2 2294 103 0 0 chr13 26875189 26875479 -92869419 - AluSg SINE Alu -20 290 1 747 182 8 0 chr13 26875539 26875671 -92869227 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr13 26876210 26876232 -92868666 + AT_rich Low_complexity Low_complexity 1 22 0 1856 147 6 16 chr13 26876457 26876770 -92868128 - AluJo SINE Alu -2 310 1 418 317 35 7 chr13 26877853 26877998 -92866900 + MLT1F1 LTR MaLR 14 162 -431 1072 154 65 25 chr13 26878019 26878220 -92866678 + AluJo SINE Alu 85 293 -19 448 100 67 44 chr13 26878220 26878310 -92866588 + LTR9 LTR ERV1 435 526 -86 254 28 0 28 chr13 26878316 26878352 -92866546 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1370 143 0 14 chr13 26878359 26878575 -92866323 + AluJb SINE Alu 82 294 -18 1234 231 75 32 chr13 26878604 26878886 -92866012 + MLT1F1 LTR MaLR 202 503 -64 2308 102 0 0 chr13 26878886 26879179 -92865719 - AluSx SINE Alu -19 293 1 1234 231 75 32 chr13 26879179 26879242 -92865656 + MLT1F1 LTR MaLR 503 562 -5 180 176 0 0 chr13 26879258 26879292 -92865606 + CT-rich Low_complexity Low_complexity 1 34 0 1828 94 106 8 chr13 26879292 26879557 -92865341 - AluSc SINE Alu -18 291 1 307 191 0 0 chr13 26879557 26879620 -92865278 + MLT1F1 LTR MaLR 500 562 -5 1601 90 98 37 chr13 26879625 26879898 -92865000 - AluSc SINE Alu 0 309 30 2214 96 7 3 chr13 26880085 26880377 -92864521 + AluSc SINE Alu 1 293 -16 334 156 0 0 chr13 26880388 26880447 -92864451 - AluSc SINE Alu -250 50 3 1036 262 166 55 chr13 26880449 26881187 -92863711 - L2 LINE L2 0 3313 2658 1763 154 10 7 chr13 26881187 26881479 -92863419 - AluJb SINE Alu -1 311 19 1036 262 166 55 chr13 26881479 26881514 -92863384 - L2 LINE L2 -655 2658 2628 2337 78 10 3 chr13 26881514 26881820 -92863078 - AluY SINE Alu -3 308 1 1036 262 166 55 chr13 26881820 26882095 -92862803 - L2 LINE L2 -685 2628 2139 989 151 58 10 chr13 26882302 26882508 -92862390 - MER69 DNA AcHobo -1 2525 2310 2187 123 0 7 chr13 26882564 26882873 -92862025 - AluSc SINE Alu -1 308 2 790 30 0 10 chr13 26883034 26883133 -92861765 + L1MB2 LINE L1 6030 6127 -44 2107 115 3 42 chr13 26883136 26883448 -92861450 + AluSc SINE Alu 1 300 -9 2379 89 3 0 chr13 26883460 26883752 -92861146 + AluSq SINE Alu 1 293 -20 3515 69 22 47 chr13 26883761 26883876 -92861022 + L1PA11 LINE L1 5672 5788 -386 2129 113 0 7 chr13 26883876 26884186 -92860712 + AluSg SINE Alu 1 308 0 3515 69 22 47 chr13 26884186 26884346 -92860552 + L1PA11 LINE L1 5788 5951 -223 2384 72 3 10 chr13 26884346 26884651 -92860247 + AluSp SINE Alu 2 304 -9 3515 69 22 47 chr13 26884651 26884881 -92860017 + L1PA11 LINE L1 5951 6166 -8 22 35 0 0 chr13 26884881 26884910 -92859988 + AT_rich Low_complexity Low_complexity 1 29 0 2388 50 0 57 chr13 26884922 26885240 -92859658 + AluY SINE Alu 1 300 -11 198 0 0 0 chr13 26885256 26885278 -92859620 + (A)n Simple_repeat Simple_repeat 1 22 0 839 110 47 0 chr13 26885285 26885412 -92859486 + AluSq/x SINE Alu 1 133 -180 2575 74 0 0 chr13 26885416 26885725 -92859173 + AluSg1 SINE Alu 1 309 0 738 183 0 0 chr13 26885736 26885856 -92859042 + L1PA16 LINE L1 5817 5936 -230 2335 72 17 0 chr13 26885856 26886148 -92858750 + AluSx SINE Alu 1 297 -15 485 117 117 36 chr13 26886151 26886262 -92858636 - LTR49 LTR ERV1 -60 535 416 * 659 168 161 19 chr13 26886256 26886538 -92858360 - LTR29 LTR ERV1 -198 424 62 681 185 15 73 chr13 26886560 26886651 -92858247 - L1M4 LINE L1 -730 5448 5353 1696 155 57 10 chr13 26886651 26886947 -92857951 - AluJb SINE Alu -2 310 1 681 185 15 73 chr13 26886947 26887060 -92857838 - L1M4 LINE L1 -825 5353 5256 307 122 41 0 chr13 26887124 26887173 -92857725 + AluJ/FRAM SINE Alu 233 283 -19 2439 97 0 0 chr13 26887215 26887524 -92857374 + AluSx SINE Alu 1 309 -3 967 217 21 0 chr13 26887533 26887722 -92857176 + AluJo SINE Alu 98 290 -22 1885 158 20 0 chr13 26887737 26888029 -92856869 - AluJb SINE Alu -14 298 1 226 73 0 182 chr13 26888062 26888086 -92856812 - L1M4 LINE L1 -3736 2410 2400 2098 87 49 7 chr13 26888086 26888372 -92856526 + AluSc SINE Alu 1 298 -11 226 73 0 182 chr13 26888372 26888402 -92856496 - L1M4 LINE L1 -3746 2400 2366 1272 283 48 8 chr13 26888479 26888871 -92856027 + MLT1G1 LTR MaLR 1 408 -187 189 147 0 0 chr13 26888891 26888925 -92855973 + (A)n Simple_repeat Simple_repeat 1 34 0 363 224 50 45 chr13 26888967 26889115 -92855783 + MLT1G1 LTR MaLR 450 593 -2 251 295 116 9 chr13 26889247 26889359 -92855539 + HERVL-F LTR ERVL 4908 5031 -623 1298 166 0 9 chr13 26889364 26889575 -92855323 + AluJo SINE Alu 86 294 -18 1048 233 52 0 chr13 26889577 26889826 -92855072 + HERVL-F LTR ERVL 5069 5330 -434 3225 179 16 9 chr13 26889827 26890403 -92854495 - MER6A DNA MER2_type 0 605 26 304 167 174 45 chr13 26890614 26890746 -92854152 + HERVL-F LTR ERVL 5595 5743 -21 531 269 7 14 chr13 26890751 26890892 -92854006 + MLT2F LTR ERVL 1 140 -523 615 281 152 44 chr13 26890971 26891313 -92853585 + MLT2F LTR ERVL 277 655 -8 2061 123 3 25 chr13 26891840 26892157 -92852741 - AluSx SINE Alu -2 310 1 1625 197 0 14 chr13 26892184 26892342 -92852556 - AluJo SINE Alu -21 291 137 2070 125 0 7 chr13 26892342 26892638 -92852260 - AluSx SINE Alu -18 294 1 1625 197 0 14 chr13 26892638 26892774 -92852124 - AluJo SINE Alu -175 137 1 25 31 0 0 chr13 26893060 26893092 -92851806 + AT_rich Low_complexity Low_complexity 1 32 0 744 176 0 0 chr13 26893118 26893243 -92851655 + FLAM_A SINE Alu 18 142 0 1687 165 33 0 chr13 26893247 26893544 -92851354 + AluJo SINE Alu 1 306 0 2491 63 3 0 chr13 26893729 26894029 -92850869 + AluSx SINE Alu 1 301 -11 2073 105 3 49 chr13 26894568 26894872 -92850026 - AluSx SINE Alu -22 290 1 1307 179 47 21 chr13 26895138 26895417 -92849481 - AluJb SINE Alu -15 297 12 2191 112 0 3 chr13 26895525 26895812 -92849086 - AluSx SINE Alu -26 286 1 1357 199 13 23 chr13 26896101 26896403 -92848495 - AluJo SINE Alu -13 299 1 2310 85 17 3 chr13 26896460 26896753 -92848145 - AluSg SINE Alu -13 297 1 2199 89 7 7 chr13 26896897 26897188 -92847710 - AluSx SINE Alu -21 291 1 252 289 100 0 chr13 26897262 26897352 -92847546 - MIR SINE MIR -90 172 74 210 202 11 138 chr13 26897579 26897673 -92847225 + L2 LINE L2 3232 3313 0 206 269 0 19 chr13 26898319 26898371 -92846527 + G-rich Low_complexity Low_complexity 6 56 0 214 330 0 19 chr13 26899136 26899239 -92845659 + CT-rich Low_complexity Low_complexity 4 104 0 363 23 0 0 chr13 26899508 26899552 -92845346 + (TG)n Simple_repeat Simple_repeat 2 45 0 1553 142 8 26 chr13 26899924 26900219 -92844679 - AluSx SINE Alu 0 312 32 827 150 0 0 chr13 26900549 26900682 -92844216 - FLAM_C SINE Alu 0 133 1 182 174 22 0 chr13 26900690 26900736 -92844162 + T-rich Low_complexity Low_complexity 2 48 0 2313 80 7 3 chr13 26901004 26901304 -92843594 - AluSx SINE Alu -11 301 1 2196 98 26 0 chr13 26901455 26901760 -92843138 - AluSp SINE Alu 0 313 1 728 200 8 0 chr13 26902336 26902466 -92842432 - FLAM_C SINE Alu -11 132 2 21 0 0 0 chr13 26902510 26902531 -92842367 + AT_rich Low_complexity Low_complexity 1 21 0 620 175 0 25 chr13 26902537 26902657 -92842241 - AluJb SINE Alu -145 167 51 649 163 0 59 chr13 26903103 26903238 -92841660 - FLAM_A SINE Alu 0 142 16 326 210 90 20 chr13 26903532 26903632 -92841266 + MIR SINE MIR 41 147 -115 256 264 35 11 chr13 26904079 26904166 -92840732 - L2 LINE L2 -39 3274 3186 2563 55 7 3 chr13 26904205 26904515 -92840383 - AluY SINE Alu 0 311 1 272 154 0 0 chr13 26904613 26904652 -92840246 - 5S rRNA rRNA -82 39 1 2099 114 17 0 chr13 26904719 26905018 -92839880 - AluSg SINE Alu -6 304 1 647 230 98 10 chr13 26905063 26905267 -92839631 - L1MD2 LINE L1 -3 6356 6135 1931 147 0 32 chr13 26905315 26905627 -92839271 - AluSx SINE Alu -10 302 1 411 253 0 0 chr13 26905671 26905758 -92839140 - AluJo/F(R)AM SINE Alu -92 220 134 2027 116 30 26 chr13 26905758 26906061 -92838837 - AluSx SINE Alu -8 304 1 258 169 0 31 chr13 26906219 26906284 -92838614 + (TA)n Simple_repeat Simple_repeat 2 64 0 279 54 0 0 chr13 26906290 26906327 -92838571 + (TC)n Simple_repeat Simple_repeat 1 37 0 418 198 99 0 chr13 26906419 26906520 -92838378 - MLT1B LTR MaLR -39 351 241 1252 178 38 8 chr13 26906541 26906696 -92838202 - MER7A DNA MER2_type -2782 256 92 2115 114 6 29 chr13 26906696 26907012 -92837886 + AluSc SINE Alu 1 309 0 1252 178 38 8 chr13 26907012 26907092 -92837806 - MER7A DNA MER2_type -2946 92 16 232 146 24 0 chr13 26907311 26907352 -92837546 + MER47B DNA MER2_type 13 54 -364 1923 209 52 8 chr13 26907394 26907782 -92837116 - MER47B DNA MER2_type -12 406 2 1753 176 20 0 chr13 26907954 26908250 -92836648 - AluJo SINE Alu -10 302 1 874 204 0 0 chr13 26908294 26908446 -92836452 - FRAM SINE Alu -23 153 2 27 0 0 0 chr13 26908446 26908473 -92836425 + AT_rich Low_complexity Low_complexity 1 27 0 294 301 44 0 chr13 26908519 26908632 -92836266 - HAL1 LINE L1 -13 2494 2377 347 296 88 6 chr13 26908774 26908933 -92835965 - L1MC4a LINE L1 -1926 5882 5711 1578 168 55 34 chr13 26909077 26909369 -92835529 + AluJb SINE Alu 5 302 -10 1546 189 10 32 chr13 26909610 26909922 -92834976 - AluJo SINE Alu -7 305 1 2478 55 0 39 chr13 26910344 26910655 -92834243 + AluY SINE Alu 1 299 -12 657 281 45 72 chr13 26910749 26911123 -92833775 - L2 LINE L2 0 3313 2950 1477 251 107 27 chr13 26911184 26911234 -92833664 - L2 LINE L2 -575 2739 2694 2362 92 0 0 chr13 26911234 26911527 -92833371 + AluY SINE Alu 1 293 -18 1477 251 107 27 chr13 26911527 26911999 -92832899 - L2 LINE L2 -620 2694 2175 2206 114 10 0 chr13 26912302 26912610 -92832288 + AluSq SINE Alu 1 311 -2 250 287 168 34 chr13 26912712 26913233 -92831665 + L1ME4a LINE L1 5298 5991 -130 2205 112 0 10 chr13 26913233 26913537 -92831361 - AluSc SINE Alu -8 301 1 250 287 168 34 chr13 26913537 26913689 -92831209 + L1ME4a LINE L1 5991 6121 0 2166 134 0 3 chr13 26914489 26914796 -92830102 - AluSq SINE Alu -7 306 1 2386 46 39 26 chr13 26914809 26915115 -92829783 - AluY SINE Alu 0 311 2 1920 126 26 10 chr13 26915314 26915616 -92829282 + AluSx SINE Alu 1 307 -5 188 159 0 23 chr13 26915698 26915742 -92829156 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 11222 191 57 33 chr13 26916032 26916712 -92828186 + L1PA15 LINE L1 3106 3768 -2397 1702 179 10 7 chr13 26916712 26917020 -92827878 + AluJb SINE Alu 1 309 -3 11222 191 57 33 chr13 26917020 26918596 -92826302 + L1PA15 LINE L1 3768 5305 -860 2436 74 0 3 chr13 26918596 26918894 -92826004 + AluY SINE Alu 1 297 -14 11222 191 57 33 chr13 26918894 26919451 -92825447 + L1PA15 LINE L1 5305 5980 -185 2223 104 3 3 chr13 26919451 26919748 -92825150 - AluSp SINE Alu -16 297 1 11222 191 57 33 chr13 26919748 26919924 -92824974 + L1PA15 LINE L1 5980 6150 -15 2110 120 3 25 chr13 26919925 26920242 -92824656 - AluSx SINE Alu -2 310 1 2190 176 41 22 chr13 26921203 26921619 -92823279 - MLT1C LTR MaLR -43 424 1 21 36 0 0 chr13 26921941 26921969 -92822929 + AT_rich Low_complexity Low_complexity 1 28 0 293 338 121 6 chr13 26922118 26922275 -92822623 - MIR SINE MIR -83 179 5 196 245 0 20 chr13 26922349 26922398 -92822500 + MIR SINE MIR 100 147 -61 1705 114 153 4 chr13 26922404 26922659 -92822239 + AluSx SINE Alu 2 294 -8 902 194 19 7 chr13 26922698 26922853 -92822045 + FRAM SINE Alu 1 157 -9 519 160 0 0 chr13 26922975 26923050 -92821848 + AluJo SINE Alu 2 76 -236 620 191 0 0 chr13 26923052 26923146 -92821752 - AluJb SINE Alu -20 292 199 315 89 107 18 chr13 26923146 26923202 -92821696 + AluJo SINE Alu 76 136 -166 486 314 67 22 chr13 26923424 26923647 -92821251 - MIR SINE MIR -21 241 9 927 163 39 28 chr13 26923918 26924096 -92820802 + AluYa5 SINE Alu 112 291 -20 337 239 33 19 chr13 26924098 26924239 -92820659 - L1MB7 LINE L1 -5 6179 6037 265 322 0 0 chr13 26924303 26924362 -92820536 - MIR SINE MIR -156 106 48 384 219 75 62 chr13 26924571 26924731 -92820167 - MER103 DNA DNA -1 165 4 2235 106 3 0 chr13 26924913 26925206 -92819692 - AluSg SINE Alu -16 294 1 864 154 0 22 chr13 26925287 26925423 -92819475 - FLAM_C SINE Alu 0 133 1 300 294 101 0 chr13 26925480 26925589 -92819309 + MIR SINE MIR 59 178 -84 1476 208 27 53 chr13 26925642 26926017 -92818881 - MLT1A1 LTR MaLR 0 365 1 4699 209 65 105 chr13 26926017 26927083 -92817815 - MLT1A1-int LTR MaLR 0 1735 628 439 77 31 0 chr13 26927083 26927148 -92817750 - FLAM_C SINE Alu -4 139 73 4699 209 65 105 chr13 26927148 26927204 -92817694 - MLT1A1-int LTR MaLR -1107 628 571 1533 117 144 16 chr13 26927204 26927461 -92817437 - AluSg1 SINE Alu -19 290 1 4699 209 65 105 chr13 26927461 26927555 -92817343 - MLT1A1-int LTR MaLR -1164 571 512 1717 172 13 23 chr13 26927555 26927863 -92817035 + AluJb SINE Alu 1 305 -7 4699 209 65 105 chr13 26927863 26927984 -92816914 - MLT1A1-int LTR MaLR -1223 512 388 812 150 48 27 chr13 26927994 26928141 -92816757 - MLT1A1 LTR MaLR -215 150 1 1244 167 46 5 chr13 26928162 26928378 -92816520 - MER46A DNA MER2_type 0 236 12 2252 107 7 0 chr13 26928439 26928728 -92816170 + AluSx SINE Alu 3 293 -19 2360 82 7 0 chr13 26928737 26929029 -92815869 + AluY SINE Alu 1 294 -17 273 75 0 0 chr13 26929207 26929247 -92815651 + (T)n Simple_repeat Simple_repeat 1 40 0 991 173 0 53 chr13 26929363 26929571 -92815327 - AluJo SINE Alu -103 209 13 212 391 0 0 chr13 26929723 26929792 -92815106 - L2 LINE L2 -62 3251 3183 745 167 0 0 chr13 26930026 26930134 -92814764 + FLAM_C SINE Alu 18 125 -18 322 173 31 44 chr13 26930310 26930570 -92814328 + AluJo SINE Alu 7 299 -3 1892 129 26 26 chr13 26931460 26931736 -92813162 + AluSx SINE Alu 1 279 -33 396 0 0 0 chr13 26931736 26931780 -92813118 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1892 129 26 26 chr13 26931780 26931813 -92813085 + AluSx SINE Alu 278 310 -2 314 219 196 58 chr13 26931822 26932082 -92812816 + L1ME4a LINE L1 5745 6040 -81 231 174 486 9 chr13 26932131 26932240 -92812658 + MIR SINE MIR 84 244 -18 230 204 74 28 chr13 26933171 26933279 -92811619 + L1MC4 LINE L1 7813 8042 0 804 153 16 0 chr13 26933293 26933417 -92811481 + FLAM_A SINE Alu 3 128 -5 2089 83 0 107 chr13 26933419 26933755 -92811143 + AluSg SINE Alu 1 300 -10 2357 95 0 13 chr13 26933756 26934071 -92810827 + AluSx SINE Alu 1 311 -1 2235 99 20 3 chr13 26935167 26935459 -92809439 + AluSx SINE Alu 1 297 -15 180 0 0 0 chr13 26935524 26935544 -92809354 + (A)n Simple_repeat Simple_repeat 1 20 0 963 190 67 10 chr13 26935546 26935741 -92809157 + MER20 DNA MER1_type 14 219 0 1639 143 23 97 chr13 26935997 26936182 -92808716 - MER33 DNA MER1_type -2261 324 176 1877 165 7 0 chr13 26936182 26936485 -92808413 - AluJb SINE Alu -7 305 1 1639 143 23 97 chr13 26936485 26936649 -92808249 - MER33 DNA MER1_type -2409 176 1 418 322 26 13 chr13 26936666 26936818 -92808080 - MER5A DNA MER1_type -29 160 7 2033 150 0 6 chr13 26937017 26937330 -92807568 + AluJb SINE Alu 1 311 -1 351 305 93 20 chr13 26938614 26938765 -92806133 - L2 LINE L2 -12 3301 3140 205 213 0 27 chr13 26940091 26940166 -92804732 + A-rich Low_complexity Low_complexity 3 75 0 911 223 86 9 chr13 26940530 26940763 -92804135 - MIR SINE MIR -10 252 2 2340 109 0 0 chr13 26940815 26941126 -92803772 - AluSx SINE Alu -1 311 1 2526 57 0 7 chr13 26941137 26941435 -92803463 - AluY SINE Alu -15 296 1 2291 108 0 9 chr13 26941669 26941985 -92802913 - AluSq SINE Alu 0 313 1 356 309 41 55 chr13 26942712 26942764 -92802134 - L3 LINE CR1 -20 1557 1506 207 0 0 0 chr13 26942764 26942787 -92802111 + (CA)n Simple_repeat Simple_repeat 1 23 0 356 309 41 55 chr13 26942787 26942954 -92801944 - L3 LINE CR1 -71 1506 1341 479 282 44 26 chr13 26943217 26943444 -92801454 - L1ME3A LINE L1 -208 5962 5732 923 158 25 19 chr13 26943459 26943617 -92801281 - AluJb SINE Alu -29 283 125 706 291 89 11 chr13 26943628 26943910 -92800988 - L1ME3A LINE L1 -464 5706 5403 523 186 0 0 chr13 26943918 26944004 -92800894 + MER93b LTR ERV1 1 86 -287 953 89 0 0 chr13 26944029 26944153 -92800745 + FLAM_C SINE Alu 1 124 -19 1090 192 144 19 chr13 26944173 26944444 -92800454 + MER93b LTR ERV1 69 373 0 313 312 0 64 chr13 26944612 26944769 -92800129 - L3 LINE CR1 -185 1392 1246 694 268 218 9 chr13 26944880 26945197 -92799701 - L3 LINE CR1 -333 1244 862 214 208 0 42 chr13 26945374 26945422 -92799476 + GA-rich Low_complexity Low_complexity 3 48 0 1292 149 5 28 chr13 26946289 26946503 -92798395 - MER3 DNA MER1_type 0 209 1 476 235 100 71 chr13 26946511 26946680 -92798218 - MIR SINE MIR -62 146 2 2187 119 3 10 chr13 26947347 26947658 -92797240 + AluSq SINE Alu 1 309 -4 843 129 0 57 chr13 26947667 26947807 -92797091 + FLAM_C SINE Alu 2 133 0 2250 89 11 0 chr13 26947822 26948134 -92796764 + AluSp SINE Alu 1 315 0 396 276 184 7 chr13 26948169 26948321 -92796577 + MER5A DNA MER1_type 11 189 0 717 227 20 0 chr13 26948467 26948617 -92796281 + AluJo SINE Alu 18 170 -142 22 0 0 0 chr13 26949238 26949260 -92795638 + AT_rich Low_complexity Low_complexity 1 22 0 2083 120 0 10 chr13 26949269 26949603 -92795295 + AluSc SINE Alu 1 309 0 2006 111 0 83 chr13 26949702 26950026 -92794872 + AluSx SINE Alu 1 297 -15 207 100 0 0 chr13 26950056 26950086 -92794812 + (A)n Simple_repeat Simple_repeat 1 30 0 1289 136 86 58 chr13 26950177 26950192 -92794706 - L1MC2 LINE L1 -8 6336 6323 2124 113 3 3 chr13 26950192 26950494 -92794404 - AluSx SINE Alu -10 302 1 1289 136 86 58 chr13 26950494 26950663 -92794235 - L1MC2 LINE L1 -21 6323 6141 2000 132 0 0 chr13 26950663 26950936 -92793962 + AluSx SINE Alu 1 273 -39 1289 136 86 58 chr13 26950936 26951007 -92793891 - L1MC2 LINE L1 -203 6141 6073 1750 164 0 17 chr13 26951073 26951372 -92793526 + AluJb SINE Alu 1 294 -18 1893 119 48 104 chr13 26951897 26952050 -92792848 + MLT1B LTR MaLR 16 176 -214 2077 117 3 3 chr13 26952050 26952349 -92792549 + AluSq SINE Alu 1 299 -14 1893 119 48 104 chr13 26952349 26952589 -92792309 + MLT1B LTR MaLR 176 387 -3 2179 104 0 3 chr13 26952786 26953073 -92791825 + AluSx SINE Alu 1 286 -26 198 0 0 0 chr13 26953073 26953095 -92791803 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 863 173 0 0 chr13 26953580 26953707 -92791191 + FLAM_A SINE Alu 1 127 -6 3538 203 57 52 chr13 26953761 26953882 -92791016 + L1MC4a LINE L1 5256 5375 -2433 2226 111 0 0 chr13 26953882 26954180 -92790718 + AluSg1 SINE Alu 1 298 -11 3538 203 57 52 chr13 26954180 26954949 -92789949 + L1MC4a LINE L1 5375 6139 -1669 1986 147 0 0 chr13 26954949 26955272 -92789626 + AluJo SINE Alu 1 323 0 1037 153 174 116 chr13 26955272 26955421 -92789477 + AluJo SINE Alu 3 142 -160 225 0 0 0 chr13 26955421 26955446 -92789452 + (TAA)n Simple_repeat Simple_repeat 1 25 0 1037 153 174 116 chr13 26955446 26955571 -92789327 + AluJo SINE Alu 142 293 -9 3538 203 57 52 chr13 26955571 26956642 -92788256 + L1MC4a LINE L1 6138 7403 -405 2017 93 11 4 chr13 26956642 26956912 -92787986 - AluSp SINE Alu -41 272 1 206 122 0 20 chr13 26957610 26957659 -92787239 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 404 93 0 0 chr13 26957920 26957974 -92786924 + MSTB LTR MaLR 1 54 -372 845 109 8 31 chr13 26957974 26958102 -92786796 + AluSq/x SINE Alu 1 125 -188 353 137 0 0 chr13 26958146 26958197 -92786701 + Alu SINE Alu 2 52 -250 1604 149 0 41 chr13 26958197 26958466 -92786432 - AluJb SINE Alu -54 258 1 330 368 134 9 chr13 26958586 26959040 -92785858 - L2 LINE L2 -439 2875 2365 2104 108 14 89 chr13 26959176 26959421 -92785477 - MER2 DNA MER2_type 0 344 135 1783 164 7 3 chr13 26959421 26959707 -92785191 + AluJb SINE Alu 1 287 -25 2104 108 14 89 chr13 26959707 26959832 -92785066 - MER2 DNA MER2_type -209 135 2 775 172 0 0 chr13 26960389 26960517 -92784381 + MER3 DNA MER1_type 1 128 -81 2244 85 0 47 chr13 26960581 26960899 -92783999 - AluSx SINE Alu -9 303 1 833 219 70 32 chr13 26960910 26961240 -92783658 - HAL1 LINE L1 -1045 1462 748 313 188 62 0 chr13 26961241 26961305 -92783593 - HAL1 LINE L1 -1803 704 637 309 288 131 12 chr13 26961349 26961430 -92783468 - HAL1 LINE L1 -2238 269 199 761 196 8 15 chr13 26961430 26961563 -92783335 - FLAM_C SINE Alu 0 133 2 309 288 131 12 chr13 26961563 26961641 -92783257 - HAL1 LINE L1 -2308 199 91 249 158 12 122 chr13 26961651 26961733 -92783165 - L1MA9 LINE L1 -12 6300 6228 * 319 163 25 0 chr13 26961722 26961803 -92783095 + (TA)n Simple_repeat Simple_repeat 1 83 0 476 143 7 143 chr13 26961852 26961968 -92782930 - L1MA9 LINE L1 -74 6238 6108 183 42 0 0 chr13 26961968 26961992 -92782906 + (TC)n Simple_repeat Simple_repeat 2 25 0 1912 147 3 10 chr13 26961992 26962285 -92782613 - AluSx SINE Alu -21 291 1 476 143 7 143 chr13 26962285 26962307 -92782591 - L1MA9 LINE L1 -171 6141 6118 1521 91 5 14 chr13 26962342 26962551 -92782347 - AluY SINE Alu -31 280 74 264 311 0 33 chr13 26962698 26962788 -92782110 + HAL1 LINE L1 810 896 -1611 * 766 186 49 20 chr13 26962775 26962979 -92781919 + HAL1 LINE L1 1253 1462 -1045 2422 65 3 10 chr13 26962990 26963299 -92781599 + AluY SINE Alu 1 307 -4 1581 193 0 29 chr13 26963327 26963638 -92781260 + AluJb SINE Alu 1 302 -10 245 264 91 18 chr13 26963800 26963910 -92780988 - L1MA10 LINE L1 -4 6330 6213 1875 155 3 19 chr13 26963921 26964238 -92780660 + AluJo SINE Alu 1 312 0 2855 200 25 66 chr13 26964253 26964898 -92780000 - L1ME1 LINE L1 -106 6129 5522 1705 174 30 7 chr13 26964898 26965202 -92779696 - AluJb SINE Alu -1 311 1 2855 200 25 66 chr13 26965202 26965355 -92779543 - L1ME1 LINE L1 -713 5522 5364 577 98 98 36 chr13 26965360 26965472 -92779426 - L1MA9 LINE L1 -12 6300 6182 490 32 18 0 chr13 26965472 26965545 -92779353 - L1P4 LINE L1 -737 5437 5357 1084 99 7 0 chr13 26965545 26965697 -92779201 + L1MA4A LINE L1 6146 6298 -5 2261 112 0 0 chr13 26965711 26966005 -92778893 + AluSx SINE Alu 1 294 -18 300 162 40 121 chr13 26966008 26966070 -92778828 - L1MA8 LINE L1 -106 6185 6132 2114 125 0 3 chr13 26966070 26966365 -92778533 - AluSx SINE Alu -18 294 1 300 162 40 121 chr13 26966365 26966401 -92778497 - L1MA8 LINE L1 -159 6132 6095 1427 169 28 106 chr13 26966548 26966908 -92777990 - MLT2B3 LTR ERVL 0 554 223 1882 135 4 4 chr13 26966936 26967196 -92777702 + AluJb SINE Alu 23 282 -30 636 171 22 28 chr13 26967227 26967408 -92777490 + GA-rich Low_complexity Low_complexity 1 180 0 1824 165 47 60 chr13 26967417 26967513 -92777385 - MSTB1 LTR MaLR -55 377 281 2858 68 0 66 chr13 26967513 26967893 -92777005 - THE1A LTR MaLR 0 355 1 12591 87 4 6 chr13 26967893 26968973 -92775925 - THE1A-int LTR MaLR 0 1580 504 2258 121 0 0 chr13 26968973 26969280 -92775618 - AluSg SINE Alu -3 307 1 12591 87 4 6 chr13 26969280 26969783 -92775115 - THE1A-int LTR MaLR -1076 504 1 3005 73 3 0 chr13 26969783 26970137 -92774761 - THE1A LTR MaLR 0 355 1 1824 165 47 60 chr13 26970137 26970362 -92774536 - MSTB1 LTR MaLR -149 283 57 2244 112 0 0 chr13 26970362 26970666 -92774232 + AluSx SINE Alu 1 304 -8 1824 165 47 60 chr13 26970666 26970723 -92774175 - MSTB1 LTR MaLR -375 57 1 446 122 68 0 chr13 26970723 26970797 -92774101 - L1MA7 LINE L1 -188 6103 6025 * 4853 231 67 52 chr13 26970790 26972113 -92772785 - L1ME1 LINE L1 -845 5370 4069 2209 123 7 0 chr13 26972113 26972423 -92772475 - AluSx SINE Alu 0 312 1 4853 231 67 52 chr13 26972423 26972438 -92772460 - L1ME1 LINE L1 -2146 4069 4056 1519 188 0 41 chr13 26972438 26972731 -92772167 - AluJo SINE Alu -31 281 1 4853 231 67 52 chr13 26972731 26972771 -92772127 - L1ME1 LINE L1 -2159 4056 4018 1618 166 0 46 chr13 26972771 26972939 -92771959 - AluJb SINE Alu -19 293 119 441 0 0 0 chr13 26972939 26972988 -92771910 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2319 73 0 11 chr13 26972988 26973274 -92771624 - AluY SINE Alu -28 283 1 1618 166 0 46 chr13 26973274 26973411 -92771487 - AluJb SINE Alu -191 121 1 4853 231 67 52 chr13 26973411 26974305 -92770593 - L1ME1 LINE L1 -2197 4018 3159 1134 200 5 9 chr13 26974342 26974552 -92770346 - AluJo SINE Alu -94 218 10 36 0 0 0 chr13 26974568 26974604 -92770294 + AT_rich Low_complexity Low_complexity 1 36 0 935 174 40 30 chr13 26974627 26974828 -92770070 - AluJb SINE Alu -10 302 100 325 113 0 81 chr13 26974832 26974894 -92770004 - AluJb SINE Alu -160 142 86 4748 239 45 62 chr13 26974897 26974962 -92769936 - L1ME1 LINE L1 -3329 2886 2821 2640 33 0 0 chr13 26974962 26975262 -92769636 + AluY SINE Alu 1 300 -11 4748 239 45 62 chr13 26975262 26975332 -92769566 - L1ME1 LINE L1 -3394 2821 2751 2179 107 10 3 chr13 26975332 26975642 -92769256 + AluSx SINE Alu 1 312 0 4748 239 45 62 chr13 26975642 26976099 -92768799 - L1ME1 LINE L1 -3464 2751 2288 852 181 0 0 chr13 26976099 26976226 -92768672 + FLAM_C SINE Alu 1 127 -6 4748 239 45 62 chr13 26976226 26976888 -92768010 - L1ME1 LINE L1 -3927 2288 1616 396 0 0 0 chr13 26976888 26976932 -92767966 + (TG)n Simple_repeat Simple_repeat 2 45 0 1893 151 4 0 chr13 26976932 26977211 -92767687 - AluSx SINE Alu -28 284 5 4748 239 45 62 chr13 26977211 26977364 -92767534 - L1ME1 LINE L1 -4598 1617 1463 1481 181 0 0 chr13 26977364 26977602 -92767296 - AluJo SINE Alu -38 274 37 4748 239 45 62 chr13 26977602 26978518 -92766380 - L1ME1 LINE L1 -4752 1463 612 3910 191 20 55 chr13 26978516 26978558 -92766340 + L1ME1 LINE L1 5141 5183 -1151 * 2242 111 0 0 chr13 26978558 26978846 -92766052 - AluSx SINE Alu -14 298 11 2280 84 7 3 chr13 26978853 26979151 -92765747 - AluSg SINE Alu -11 299 1 3910 191 20 55 chr13 26979151 26980007 -92764891 + L1ME1 LINE L1 5189 6074 -260 2228 106 0 20 chr13 26980007 26980309 -92764589 - AluSx SINE Alu -16 296 1 1995 125 11 0 chr13 26980319 26980598 -92764300 - AluSg SINE Alu -22 288 7 3910 191 20 55 chr13 26980598 26980761 -92764137 + L1ME1 LINE L1 6083 6332 -2 1831 158 4 0 chr13 26980764 26981043 -92763855 + AluJb SINE Alu 1 280 -32 226 249 79 97 chr13 26981074 26981239 -92763659 + MARNA DNA Mariner 345 506 -80 352 221 50 122 chr13 26981379 26981478 -92763420 + MIR3 SINE MIR 37 119 -89 2942 0 0 0 chr13 26981478 26981789 -92763109 - AluY SINE Alu 0 311 1 352 221 50 122 chr13 26981789 26981870 -92763028 + MIR3 SINE MIR 119 204 -4 197 276 111 91 chr13 26981842 26981921 -92762977 + L2 LINE L2 2157 2233 -1081 * 926 160 0 0 chr13 26981921 26982052 -92762846 + AluJo/FLAM SINE Alu 1 131 -171 2302 103 0 6 chr13 26982054 26982365 -92762533 + AluSx SINE Alu 1 309 -3 197 276 111 91 chr13 26982365 26982633 -92762265 + L2 LINE L2 2233 2514 -800 1126 129 0 6 chr13 26982646 26982809 -92762089 - FRAM SINE Alu -23 153 1 577 212 72 52 chr13 26982830 26983023 -92761875 + L2 LINE L2 2551 2747 -567 2136 129 0 13 chr13 26983184 26983494 -92761404 - AluJb SINE Alu -6 306 1 681 158 108 17 chr13 26983496 26983616 -92761282 - FLAM_A SINE Alu -2 131 1 443 353 112 31 chr13 26983854 26984177 -92760721 + L2 LINE L2 2918 3266 -6 180 241 0 0 chr13 26984177 26984235 -92760663 + GA-rich Low_complexity Low_complexity 1 58 0 215 231 58 0 chr13 26984353 26984405 -92760493 - MIR SINE MIR -102 160 106 1929 170 0 3 chr13 26984758 26985069 -92759829 - AluJo SINE Alu -2 310 1 21 0 0 0 chr13 26985072 26985093 -92759805 + AT_rich Low_complexity Low_complexity 1 21 0 2389 83 0 0 chr13 26985553 26985842 -92759056 - AluSc SINE Alu -20 289 1 1863 170 3 0 chr13 26986341 26986630 -92758268 + AluJb SINE Alu 1 290 -22 2166 117 17 0 chr13 26986710 26987000 -92757898 - AluSx SINE Alu -17 295 1 1653 174 50 17 chr13 26987211 26987510 -92757388 + AluJb SINE Alu 2 310 -2 231 36 0 0 chr13 26987510 26987538 -92757360 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 211 268 28 56 chr13 26987901 26987972 -92756926 - L3 LINE CR1 -2 1575 1507 2577 72 0 0 chr13 26988301 26988605 -92756293 + AluSx SINE Alu 1 304 -8 2237 254 60 8 chr13 26988719 26989373 -92755525 + L1ME3 LINE L1 5474 6161 -1 227 259 119 28 chr13 26989775 26989918 -92754980 - MIR3 SINE MIR -9 199 44 312 344 152 7 chr13 26991590 26991741 -92753157 + MIR3 SINE MIR 30 202 -6 3527 119 73 16 chr13 26991878 26992413 -92752485 + L1MB2 LINE L1 5554 6126 -45 2316 102 3 0 chr13 26992413 26992717 -92752181 + AluSx SINE Alu 1 305 -7 3527 119 73 16 chr13 26992717 26992759 -92752139 + L1MB2 LINE L1 6126 6164 -7 1958 130 18 0 chr13 26992996 26993272 -92751626 + AluSx SINE Alu 1 281 -31 2269 105 3 3 chr13 26993274 26993579 -92751319 + AluSg1 SINE Alu 2 306 -3 2197 88 7 0 chr13 26993832 26994117 -92750781 - AluSg SINE Alu -23 287 1 1322 256 58 23 chr13 26994888 26995286 -92749612 + L1ME4a LINE L1 5478 5889 -273 774 190 131 0 chr13 26995489 26995626 -92749272 - FAM SINE Alu -30 155 1 2321 80 3 13 chr13 26995755 26996055 -92748843 + AluSg SINE Alu 1 297 -13 1650 194 7 13 chr13 26996069 26996379 -92748519 + AluJo SINE Alu 1 308 -4 716 183 71 128 chr13 26996464 26996561 -92748337 + L1MC5 LINE L1 7309 7410 -551 2235 104 0 0 chr13 26996561 26996883 -92748015 + AluSx SINE Alu 1 322 0 716 183 71 128 chr13 26996883 26997150 -92747748 + L1MC5 LINE L1 7410 7654 -307 920 63 0 24 chr13 26997158 26997284 -92747614 + AluSg/x SINE Alu 174 296 -14 359 256 44 118 chr13 26997284 26997390 -92747508 + L1MC5 LINE L1 7663 7775 -186 949 169 17 11 chr13 26997390 26997567 -92747331 + L1MB7 LINE L1 5996 6173 -11 359 256 44 118 chr13 26997567 26997730 -92747168 + L1MC5 LINE L1 7775 7912 -49 2067 152 118 26 chr13 26998780 26999195 -92745703 - MLT1C LTR MaLR 0 467 15 259 289 24 0 chr13 26999474 26999557 -92745341 + L1ME4a LINE L1 5951 6035 -86 415 317 8 8 chr13 26999575 26999698 -92745200 - MIR SINE MIR -130 132 10 295 303 74 0 chr13 26999707 26999829 -92745069 - MIR SINE MIR 0 262 132 1844 179 71 0 chr13 27000100 27000424 -92744474 - MER7A DNA MER2_type -1 345 1 271 273 112 35 chr13 27000536 27000707 -92744191 + MLT1J LTR MaLR 258 481 -9 186 322 0 81 chr13 27001045 27001132 -92743766 + L2 LINE L2 3190 3269 -3 23 33 0 0 chr13 27001156 27001186 -92743712 + AT_rich Low_complexity Low_complexity 1 30 0 267 29 0 0 chr13 27001236 27001245 -92743653 + (A)n Simple_repeat Simple_repeat 1 9 -25 1657 180 0 36 chr13 27001245 27001410 -92743488 - AluJo SINE Alu -18 294 143 2245 120 3 0 chr13 27001410 27001719 -92743179 - AluSp SINE Alu -3 310 1 1657 180 0 36 chr13 27001719 27001858 -92743040 - AluJo SINE Alu -169 143 1 267 29 0 0 chr13 27001858 27001882 -92743016 + (A)n Simple_repeat Simple_repeat 8 34 0 349 174 76 22 chr13 27001885 27001977 -92742921 - L1MC5 LINE L1 -38 7923 7827 2263 89 3 0 chr13 27002063 27002354 -92742544 - AluY SINE Alu -19 292 1 220 228 70 0 chr13 27002700 27002757 -92742141 - MER5A DNA MER1_type -128 61 1 426 285 68 98 chr13 27002823 27003058 -92741840 + MIR SINE MIR 4 231 -31 350 296 70 35 chr13 27003118 27003260 -92741638 + MIR3 SINE MIR 7 153 -55 27 49 0 0 chr13 27003349 27003390 -92741508 + AT_rich Low_complexity Low_complexity 1 41 0 309 214 60 12 chr13 27003633 27003717 -92741181 + CT-rich Low_complexity Low_complexity 4 91 0 923 175 26 52 chr13 27003719 27003913 -92740985 - AluJo SINE Alu -38 274 86 2451 78 3 0 chr13 27003995 27004290 -92740608 - AluSp SINE Alu -17 296 1 2216 114 3 0 chr13 27004741 27005039 -92739859 + AluSx SINE Alu 1 299 -13 560 269 16 65 chr13 27007494 27007680 -92737218 + MER5B DNA MER1_type 1 177 -1 446 302 89 12 chr13 27008379 27008548 -92736350 + MER5A DNA MER1_type 8 189 0 863 214 66 6 chr13 27009035 27009217 -92735681 - MER3 DNA MER1_type -16 193 1 367 232 56 16 chr13 27009874 27009999 -92734899 + L1MC5 LINE L1 7796 7925 -36 659 244 28 11 chr13 27010039 27010219 -92734679 - MIR SINE MIR -6 256 74 387 276 159 6 chr13 27010306 27010476 -92734422 - L2 LINE L2 0 3313 3118 2147 120 0 3 chr13 27010901 27011192 -92733706 + AluSc SINE Alu 1 290 -19 2408 88 3 0 chr13 27011792 27012097 -92732801 - AluSx SINE Alu -6 306 1 2380 87 3 16 chr13 27013002 27013311 -92731587 - AluSx SINE Alu -7 305 1 254 188 24 24 chr13 27013692 27013777 -92731121 - HAL1 LINE L1 -121 2386 2302 816 216 123 47 chr13 27013878 27014112 -92730786 - HAL1 LINE L1 -538 1969 1696 258 32 0 0 chr13 27014112 27014143 -92730755 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 816 216 123 47 chr13 27014143 27014273 -92730625 - HAL1 LINE L1 -811 1696 1577 2217 120 0 0 chr13 27014284 27014584 -92730314 - AluSx SINE Alu -12 300 1 25 31 0 0 chr13 27014587 27014619 -92730279 + AT_rich Low_complexity Low_complexity 1 32 0 1025 252 17 4 chr13 27014880 27015110 -92729788 - MIR SINE MIR -24 238 6 597 250 154 27 chr13 27015124 27015592 -92729306 - L1ME LINE L1 -304 5817 5278 340 336 56 48 chr13 27015685 27015935 -92728963 - L1ME LINE L1 -1013 5133 4882 624 315 127 27 chr13 27016065 27016579 -92728319 - L1ME LINE L1 -1487 4659 4095 243 0 0 0 chr13 27016669 27016696 -92728202 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1320 255 159 72 chr13 27016705 27017191 -92727707 - HAL1 LINE L1 -1089 1418 976 183 80 0 0 chr13 27017191 27017216 -92727682 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1320 255 159 72 chr13 27017216 27018034 -92726864 - HAL1 LINE L1 -1531 976 1 184 280 129 30 chr13 27018038 27018170 -92726728 + L2 LINE L2 2689 2833 -481 227 360 0 9 chr13 27018200 27018311 -92726587 + CT-rich Low_complexity Low_complexity 1 110 0 1943 121 29 0 chr13 27019554 27019826 -92725072 - AluSx SINE Alu -32 280 1 2553 47 14 0 chr13 27020063 27020360 -92724538 - AluY SINE Alu -10 301 1 1498 183 32 18 chr13 27020519 27020804 -92724094 - AluJb SINE Alu -22 290 2 2314 76 3 7 chr13 27020834 27021135 -92723763 + AluY SINE Alu 1 300 -11 449 252 18 0 chr13 27021262 27021373 -92723525 + MER58 DNA MER1_type 1 113 -102 283 228 0 0 chr13 27021376 27021433 -92723465 + MER58 DNA MER1_type 2364 2420 0 2252 101 3 3 chr13 27021634 27021931 -92722967 + AluSp SINE Alu 1 297 -16 2345 81 7 10 chr13 27022782 27023091 -92721807 + AluSq SINE Alu 1 308 -5 28 79 0 0 chr13 27023175 27023238 -92721660 + AT_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr13 27023518 27023548 -92721350 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr13 27024622 27024651 -92720247 + (T)n Simple_repeat Simple_repeat 1 29 0 214 279 0 76 chr13 27026698 27026777 -92718121 - L2 LINE L2 0 3313 3241 696 270 204 18 chr13 27026878 27027079 -92717819 - L2 LINE L2 -313 3000 2838 2292 83 3 0 chr13 27027079 27027368 -92717530 + AluY SINE Alu 2 291 -20 696 270 204 18 chr13 27027368 27027515 -92717383 - L2 LINE L2 -475 2838 2593 2225 101 10 0 chr13 27027647 27027943 -92716955 + AluSx SINE Alu 1 299 -13 26 30 0 0 chr13 27028796 27028829 -92716069 + AT_rich Low_complexity Low_complexity 1 33 0 2031 136 13 13 chr13 27029083 27029384 -92715514 + AluJo SINE Alu 1 301 -11 530 262 52 62 chr13 27029583 27029793 -92715105 - MIR SINE MIR -18 244 37 260 212 20 91 chr13 27030099 27030198 -92714700 + L1 LINE L1 4108 4199 -1947 419 309 92 43 chr13 27030231 27030558 -92714340 + L1 LINE L1 4260 4602 -1544 242 260 0 13 chr13 27030715 27030792 -92714106 + L1 LINE L1 4751 4826 -1320 21 0 0 0 chr13 27030854 27030875 -92714023 + AT_rich Low_complexity Low_complexity 1 21 0 1934 140 14 0 chr13 27030876 27031155 -92713743 - AluJb SINE Alu -23 289 7 287 248 26 17 chr13 27031166 27031283 -92713615 + L1 LINE L1 4922 5039 -1107 29 28 0 0 chr13 27031316 27031352 -92713546 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 27031369 27031391 -92713507 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr13 27031699 27031752 -92713146 + AT_rich Low_complexity Low_complexity 1 53 0 2027 113 53 0 chr13 27031788 27032071 -92712827 + AluSx SINE Alu 2 299 -13 647 258 32 32 chr13 27032242 27032428 -92712470 + MER5A DNA MER1_type 4 189 0 587 252 15 0 chr13 27032763 27032894 -92712004 - FLAM_A SINE Alu 0 133 1 310 258 129 0 chr13 27033048 27033141 -92711757 + MIR SINE MIR 118 222 -40 2831 9 0 6 chr13 27033250 27033565 -92711333 - AluYb8 SINE Alu -5 313 1 247 262 123 8 chr13 27033621 27033743 -92711155 - L1ME4a LINE L1 -25 6096 5961 22 0 0 0 chr13 27033948 27033970 -92710928 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 27034474 27034512 -92710386 + AT_rich Low_complexity Low_complexity 1 38 0 2066 148 33 33 chr13 27035059 27035423 -92709475 - THE1B LTR MaLR 0 364 1 472 185 96 107 chr13 27036599 27036777 -92708121 - MER20 DNA MER1_type -42 177 2 323 280 47 9 chr13 27037029 27037136 -92707762 + MIR SINE MIR 131 241 -21 639 221 16 0 chr13 27037477 27037604 -92707294 + FLAM_C SINE Alu 2 130 -3 862 194 13 0 chr13 27038682 27038837 -92706061 - MER5A DNA MER1_type -3 186 30 2033 137 3 0 chr13 27039306 27039612 -92705286 - AluSg SINE Alu -3 307 1 503 240 88 88 chr13 27040369 27040458 -92704440 - L1M4 LINE L1 -1440 4706 4618 2167 103 0 0 chr13 27040458 27040773 -92704125 - AluSg SINE Alu 0 315 1 503 240 88 88 chr13 27040773 27041045 -92703853 - L1M4 LINE L1 -1527 4619 4344 2670 178 21 8 chr13 27041141 27041674 -92703224 - L1MB7 LINE L1 -16 6168 5629 918 157 5 17 chr13 27041702 27041913 -92702985 - L1MB7 LINE L1 -687 5477 5263 6498 161 29 29 chr13 27041930 27044144 -92700754 - L1MA4 LINE L1 -1 6299 4065 1630 169 11 15 chr13 27044144 27044417 -92700481 - AluJb SINE Alu -11 301 30 6498 161 29 29 chr13 27044417 27044591 -92700307 - L1MA4 LINE L1 -2235 4065 3892 708 199 47 121 chr13 27044599 27044760 -92700138 - L1MB7 LINE L1 -891 5255 5128 203 88 29 0 chr13 27044760 27044794 -92700104 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 708 199 47 121 chr13 27044794 27044954 -92699944 - L1MB7 LINE L1 -1018 5128 4958 2298 102 0 3 chr13 27045070 27045373 -92699525 - AluSx SINE Alu -10 302 1 1035 296 119 73 chr13 27045598 27045825 -92699073 - L1MEd LINE L1 -4745 1565 1350 1459 173 16 70 chr13 27045825 27045999 -92698899 - AluJb SINE Alu -17 295 144 2143 117 7 3 chr13 27045999 27046290 -92698608 - AluSq SINE Alu -21 292 1 1459 173 16 70 chr13 27046290 27046427 -92698471 - AluJb SINE Alu -168 144 1 1035 296 119 73 chr13 27046427 27047495 -92697403 - L1MEd LINE L1 -4960 1350 148 2039 143 0 0 chr13 27047495 27047811 -92697087 - AluSx SINE Alu 0 316 1 1035 296 119 73 chr13 27047811 27047956 -92696942 - L1MEd LINE L1 -6162 148 11 334 286 62 62 chr13 27047973 27048200 -92696698 - L1MB7 LINE L1 -1799 4347 4121 195 147 0 0 chr13 27049044 27049078 -92695820 + L3 LINE CR1 680 713 -864 954 184 11 6 chr13 27049223 27049397 -92695501 - FAM SINE Alu 0 175 1 714 285 45 24 chr13 27049788 27050034 -92694864 + MIR SINE MIR 1 251 -11 23 54 0 0 chr13 27050276 27050313 -92694585 + AT_rich Low_complexity Low_complexity 1 37 0 1362 113 0 0 chr13 27051727 27051904 -92692994 - AluSq SINE Alu -136 177 1 646 133 0 10 chr13 27051932 27052030 -92692868 + AluS SINE Alu 3 99 -213 198 0 0 0 chr13 27052058 27052080 -92692818 + (A)n Simple_repeat Simple_repeat 1 22 0 593 236 34 14 chr13 27052082 27052230 -92692668 - L2 LINE L2 -725 2589 2439 1691 176 14 0 chr13 27052232 27052516 -92692382 + AluJb SINE Alu 1 288 -24 199 329 101 0 chr13 27052601 27052680 -92692218 - L2 LINE L2 -912 2402 2316 701 210 180 42 chr13 27052681 27053177 -92691721 - MLT1G LTR MaLR 0 590 9 2088 222 181 31 chr13 27053235 27054047 -92690851 - L2 LINE L2 -986 2328 1395 332 304 56 16 chr13 27054022 27054147 -92690751 + MIR SINE MIR 115 244 -18 * 360 282 36 0 chr13 27054419 27054529 -92690369 - L1ME3A LINE L1 -24 6146 6033 402 57 0 0 chr13 27055797 27055850 -92689048 + (CA)n Simple_repeat Simple_repeat 2 54 0 406 211 33 0 chr13 27059052 27059142 -92685756 + MLT1C LTR MaLR 373 465 -2 3697 163 42 42 chr13 27059804 27060539 -92684359 - L1MB8 LINE L1 0 6178 5441 1498 160 70 4 chr13 27060539 27060795 -92684103 - AluJb SINE Alu -39 273 1 3697 163 42 42 chr13 27060795 27060870 -92684028 - L1MB8 LINE L1 -736 5442 5368 330 213 13 0 chr13 27060872 27060947 -92683951 + MER58A DNA MER1_type 43 118 0 1392 133 55 0 chr13 27060960 27061178 -92683720 - MER30 DNA MER1_type 0 230 1 23 0 0 0 chr13 27062877 27062900 -92681998 + AT_rich Low_complexity Low_complexity 1 23 0 2348 54 0 14 chr13 27063065 27063360 -92681538 - AluY SINE Alu -20 291 1 326 340 184 0 chr13 27063364 27063511 -92681387 - MER5A DNA MER1_type 0 189 16 253 359 19 0 chr13 27064464 27064570 -92680328 - MIR3 SINE MIR -3 205 98 2375 93 0 0 chr13 27065166 27065478 -92679420 - AluSx SINE Alu 0 312 1 369 342 60 0 chr13 27065646 27065830 -92679068 + MIR SINE MIR 36 230 -32 528 261 100 66 chr13 27066067 27066294 -92678604 + L1MC4 LINE L1 7560 7809 -233 1542 153 4 0 chr13 27066294 27066543 -92678355 - AluJo SINE Alu -61 251 2 528 261 100 66 chr13 27066543 27066725 -92678173 + L1MC4 LINE L1 7809 7983 -59 547 97 11 11 chr13 27066740 27066833 -92678065 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 2074 129 0 0 chr13 27068256 27068566 -92676332 - AluSx SINE Alu -2 310 1 201 74 0 0 chr13 27069176 27069203 -92675695 + (A)n Simple_repeat Simple_repeat 1 27 0 1132 199 5 9 chr13 27069204 27069425 -92675473 + AluJb SINE Alu 3 222 -90 628 234 229 5 chr13 27070312 27070517 -92674381 + MIR SINE MIR 2 252 -10 1943 136 0 3 chr13 27070560 27070862 -92674036 + AluSx SINE Alu 1 301 -11 315 303 56 56 chr13 27071138 27071316 -92673582 + MIR SINE MIR 39 216 -46 2026 98 56 0 chr13 27071923 27072210 -92672688 - AluSx SINE Alu -9 303 1 929 111 13 20 chr13 27073250 27073403 -92671495 - FRAM SINE Alu -17 159 8 24 0 0 0 chr13 27075591 27075615 -92669283 + AT_rich Low_complexity Low_complexity 1 24 0 770 184 19 111 chr13 27075668 27075721 -92669177 + MER5A DNA MER1_type 1 57 -132 1799 70 9 0 chr13 27075721 27075949 -92668949 - MER30 DNA MER1_type 0 230 1 770 184 19 111 chr13 27075949 27076102 -92668796 + MER5A DNA MER1_type 57 188 -1 606 299 95 30 chr13 27078489 27078657 -92666241 - MIR SINE MIR -13 249 61 2281 87 3 0 chr13 27078657 27078955 -92665943 + AluSp SINE Alu 1 299 -14 606 299 95 30 chr13 27078955 27079017 -92665881 - MIR SINE MIR -201 61 4 287 268 60 0 chr13 27079256 27079343 -92665555 + MIR SINE MIR 46 140 -68 455 280 82 44 chr13 27080631 27080813 -92664085 + MIR3 SINE MIR 6 194 -14 2153 88 7 10 chr13 27080820 27081126 -92663772 + AluSq SINE Alu 1 305 -8 195 204 0 0 chr13 27081397 27081441 -92663457 + (ATG)n Simple_repeat Simple_repeat 2 45 0 660 298 34 0 chr13 27081471 27081649 -92663249 - MIR SINE MIR -74 188 5 2301 79 3 0 chr13 27081808 27082112 -92662786 - AluSx SINE Alu -7 305 1 180 0 0 0 chr13 27083044 27083064 -92661834 + (A)n Simple_repeat Simple_repeat 1 20 0 985 198 154 8 chr13 27083329 27083576 -92661322 - MER58B DNA MER1_type -1 340 58 26 30 0 0 chr13 27085672 27085705 -92659193 + AT_rich Low_complexity Low_complexity 1 33 0 307 259 70 95 chr13 27085705 27085863 -92659035 - HAL1b LINE L1 -7 1341 1188 265 60 0 40 chr13 27085877 27085927 -92658971 + (TA)n Simple_repeat Simple_repeat 1 48 0 1956 103 69 0 chr13 27085990 27086281 -92658617 - AluSx SINE Alu 0 312 2 407 230 122 14 chr13 27086345 27086493 -92658405 - L1MC/D LINE L1 -2061 5747 5584 251 240 53 0 chr13 27086572 27086647 -92658251 + Charlie7 DNA MER1_type 1676 1754 -858 2044 104 3 3 chr13 27086728 27087017 -92657881 - AluSg SINE Alu -21 289 1 1738 150 17 23 chr13 27087232 27087532 -92657366 + AluJo SINE Alu 1 298 -14 456 286 62 18 chr13 27087886 27088071 -92656827 + MIR SINE MIR 2 192 -62 352 343 30 47 chr13 27089729 27089965 -92654933 - L3b LINE CR1 -172 1411 1180 2210 112 0 0 chr13 27092023 27092328 -92652570 - AluSx SINE Alu -7 305 1 235 266 0 31 chr13 27094170 27094234 -92650664 + L2 LINE L2 3195 3256 -16 279 379 62 7 chr13 27094283 27094428 -92650470 + L2 LINE L2 3112 3264 -8 2023 115 0 0 chr13 27095233 27095511 -92649387 + AluSx SINE Alu 21 298 -14 200 235 0 39 chr13 27096569 27096620 -92648278 - L2 LINE L2 0 3272 3224 807 266 82 20 chr13 27096628 27096872 -92648026 + MIR SINE MIR 4 262 0 2187 119 0 0 chr13 27097152 27097463 -92647435 - AluSq SINE Alu -2 311 1 552 314 57 13 chr13 27097883 27098112 -92646786 + MIR SINE MIR 3 241 -21 243 88 0 0 chr13 27098215 27098249 -92646649 + (TC)n Simple_repeat Simple_repeat 1 34 0 2199 112 0 13 chr13 27098249 27098563 -92646335 - AluSx SINE Alu -2 310 1 2041 108 3 29 chr13 27098573 27098889 -92646009 - AluSq SINE Alu -5 308 1 2423 74 0 0 chr13 27098911 27099221 -92645677 - AluY SINE Alu 0 311 2 494 259 44 112 chr13 27099221 27099689 -92645209 + L2 LINE L2 2588 3020 -252 193 232 0 101 chr13 27099777 27099846 -92645052 + L2 LINE L2 3197 3258 -14 186 43 0 0 chr13 27099850 27099873 -92645025 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 1757 162 13 3 chr13 27100074 27100383 -92644515 - AluJb SINE Alu 0 312 1 1606 159 36 0 chr13 27101718 27101994 -92642904 + AluJo SINE Alu 1 286 -26 201 132 0 0 chr13 27101994 27102032 -92642866 + (GA)n Simple_repeat Simple_repeat 1 38 0 299 295 152 0 chr13 27102413 27102518 -92642380 - L2 LINE L2 -225 3047 2927 1868 113 24 17 chr13 27102521 27102814 -92642084 + AluSx SINE Alu 1 295 -17 927 236 75 17 chr13 27102991 27103232 -92641666 - MIR SINE MIR 0 262 8 462 341 160 16 chr13 27103356 27103826 -92641072 + L2 LINE L2 2476 3011 -302 2242 69 0 26 chr13 27103908 27104212 -92640686 + AluY SINE Alu 1 296 -15 212 289 154 0 chr13 27104242 27104346 -92640552 - L2 LINE L2 -4 3268 3149 414 299 26 0 chr13 27104382 27104499 -92640399 + L2 LINE L2 3194 3313 0 498 75 0 0 chr13 27104706 27104773 -92640125 + (CA)n Simple_repeat Simple_repeat 2 68 0 260 218 90 26 chr13 27106038 27106116 -92638782 + MIR SINE MIR 111 193 -69 558 165 0 0 chr13 27106143 27106246 -92638652 + CT-rich Low_complexity Low_complexity 4 106 0 207 361 190 10 chr13 27106458 27106663 -92638235 + L2 LINE L2 3029 3270 -2 474 254 171 31 chr13 27107162 27107390 -92637508 - MIR SINE MIR 0 262 3 488 300 70 25 chr13 27107451 27107651 -92637247 + MIR SINE MIR 49 257 -5 2288 96 0 0 chr13 27108571 27108873 -92636025 + AluSx SINE Alu 1 302 -10 500 301 5 61 chr13 27109617 27109830 -92635068 - L3 LINE CR1 -195 1382 1182 519 334 51 13 chr13 27110421 27110650 -92634248 + MIR SINE MIR 15 252 -10 207 322 45 118 chr13 27110652 27110966 -92633932 - L2 LINE L2 -51 3221 2931 208 115 39 58 chr13 27111414 27111466 -92633432 + MIR SINE MIR 67 117 -91 264 122 0 0 chr13 27113129 27113170 -92631728 + (T)n Simple_repeat Simple_repeat 1 41 0 533 281 102 0 chr13 27113322 27113489 -92631409 - MIR SINE MIR 0 262 79 450 260 281 5 chr13 27113560 27113756 -92631142 + MIR SINE MIR 2 251 -11 5572 146 19 16 chr13 27114417 27115110 -92629788 + L1MA6 LINE L1 4737 5427 -873 2220 111 3 0 chr13 27115110 27115408 -92629490 + AluSx SINE Alu 1 299 -13 5572 146 19 16 chr13 27115408 27116268 -92628630 + L1MA6 LINE L1 5427 6293 -7 2212 96 0 16 chr13 27116279 27116591 -92628307 + AluSg SINE Alu 1 307 -3 434 260 50 0 chr13 27116678 27116778 -92628120 - L2 LINE L2 -1 3312 3208 318 151 314 0 chr13 27116989 27117075 -92627823 - L1MC/D LINE L1 -2340 5468 5356 330 359 91 36 chr13 27117101 27117485 -92627413 - L2 LINE L2 -485 2829 2425 307 257 48 48 chr13 27117503 27117608 -92627290 + MIR SINE MIR 86 190 -72 904 129 0 0 chr13 27117818 27117942 -92626956 + FLAM_C SINE Alu 1 124 -19 1991 119 28 0 chr13 27118903 27119188 -92625710 - AluSx SINE Alu -19 293 1 837 266 54 78 chr13 27119192 27119493 -92625405 - L1MC/D LINE L1 -762 5384 5077 977 179 0 0 chr13 27119493 27119655 -92625243 - FRAM SINE Alu -2 164 3 837 266 54 78 chr13 27119655 27120333 -92624565 - L1MC/D LINE L1 -1069 5077 4541 320 95 222 0 chr13 27120333 27120396 -92624502 + MER116 DNA Mariner 1 77 -3 837 266 54 78 chr13 27120396 27120559 -92624339 - L1MC/D LINE L1 -1605 4541 4376 2287 92 3 0 chr13 27120640 27120932 -92623966 - AluSx SINE Alu -19 293 1 735 257 40 71 chr13 27121182 27121478 -92623420 - MER102a DNA MER1_type -6 324 38 236 360 134 57 chr13 27121554 27121753 -92623145 + L2 LINE L2 2804 2986 -286 2285 95 0 3 chr13 27121753 27122049 -92622849 - AluSq SINE Alu -16 297 3 236 360 134 57 chr13 27122049 27122268 -92622630 + L2 LINE L2 2986 3254 -18 234 422 100 20 chr13 27123141 27123392 -92621506 + L2 LINE L2 2994 3264 -8 2156 99 7 0 chr13 27123413 27123732 -92621166 - AluSq SINE Alu 0 321 1 708 123 0 0 chr13 27123821 27123935 -92620963 + (ATG)n Simple_repeat Simple_repeat 1 114 0 2371 93 0 0 chr13 27123984 27124285 -92620613 - AluSq SINE Alu -12 301 1 2135 87 11 14 chr13 27124593 27124879 -92620019 - AluSq SINE Alu -28 285 1 26 0 0 0 chr13 27124934 27124960 -92619938 + AT_rich Low_complexity Low_complexity 1 26 0 2183 103 0 0 chr13 27125115 27125429 -92619469 + AluSg SINE Alu 1 314 0 198 0 0 0 chr13 27126061 27126083 -92618815 + (CAT)n Simple_repeat Simple_repeat 3 24 0 2346 101 3 0 chr13 27126137 27126444 -92618454 - AluSp SINE Alu -5 308 1 2406 235 129 20 chr13 27126637 27127352 -92617546 - MER21B LTR ERV1 -52 811 19 312 194 32 97 chr13 27127406 27127499 -92617399 - MER21B LTR ERV1 -776 87 1 2345 79 0 3 chr13 27127522 27127814 -92617084 + AluY SINE Alu 1 291 -20 384 250 96 32 chr13 27127850 27128006 -92616892 - L1MC5 LINE L1 -44 7917 7752 298 109 0 0 chr13 27128080 27128126 -92616772 - LTR23 LTR ERV1 -1 436 391 611 180 82 0 chr13 27128128 27128250 -92616648 + FLAM_C SINE Alu 1 132 -11 2305 101 82 10 chr13 27128252 27128640 -92616258 - LTR56 LTR ERV1 -21 424 9 226 221 47 23 chr13 27128775 27128861 -92616037 - L1ME4a LINE L1 -3 6118 6031 1564 163 14 54 chr13 27130611 27130905 -92613993 - AluJb SINE Alu -30 282 1 23 33 0 0 chr13 27131128 27131158 -92613740 + AT_rich Low_complexity Low_complexity 1 30 0 186 310 178 39 chr13 27131479 27131608 -92613290 - MIR SINE MIR -63 199 53 281 275 64 0 chr13 27131950 27132059 -92612839 - L1ME4a LINE L1 -5 6116 6001 840 145 0 36 chr13 27132073 27132211 -92612687 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr13 27132454 27132475 -92612423 + AT_rich Low_complexity Low_complexity 1 21 0 539 198 9 0 chr13 27134192 27134303 -92610595 + L1MA10 LINE L1 6222 6333 -1 1556 183 45 3 chr13 27134782 27135071 -92609827 + AluJo SINE Alu 1 301 -11 23 33 0 0 chr13 27135268 27135298 -92609600 + AT_rich Low_complexity Low_complexity 1 30 0 180 254 182 18 chr13 27135451 27135506 -92609392 + MIR SINE MIR 85 148 -60 1756 138 28 14 chr13 27136587 27136877 -92608021 + AluJb SINE Alu 13 306 -6 428 198 179 9 chr13 27136995 27137101 -92607797 + MER5C DNA MER1_type 1 124 -200 351 276 141 45 chr13 27139021 27139220 -92605678 + MIR SINE MIR 2 219 -43 32 26 0 0 chr13 27139612 27139651 -92605247 + AT_rich Low_complexity Low_complexity 1 39 0 361 278 139 11 chr13 27141678 27141865 -92603033 + MIR SINE MIR 52 262 0 591 200 36 0 chr13 27142056 27142166 -92602732 + FRAM SINE Alu 25 138 -38 581 177 133 0 chr13 27142280 27142393 -92602505 + FLAM_C SINE Alu 1 128 -5 1924 147 0 0 chr13 27142403 27142682 -92602216 + AluJb SINE Alu 11 289 -23 1319 167 125 11 chr13 27143078 27143342 -92601556 - AluJo SINE Alu -18 294 1 1210 201 20 8 chr13 27143724 27143968 -92600930 + AluJo SINE Alu 60 306 -6 2093 107 0 4 chr13 27144584 27144892 -92600006 + AluSg SINE Alu 1 307 0 459 296 145 13 chr13 27145058 27145217 -92599681 + MER5A DNA MER1_type 4 183 -6 2164 121 0 6 chr13 27145280 27145593 -92599305 - AluSx SINE Alu -1 311 1 1460 169 22 77 chr13 27145595 27145908 -92598990 - AluJo SINE Alu -16 296 1 915 104 72 10 chr13 27145939 27146224 -92598674 - THE1C LTR MaLR 0 375 1 248 327 44 76 chr13 27146574 27146722 -92598176 + L2 LINE L2 2461 2597 -717 1074 146 57 33 chr13 27146722 27146934 -92597964 + MER20 DNA MER1_type 2 218 -1 248 327 44 76 chr13 27146934 27147060 -92597838 + L2 LINE L2 2597 2726 -588 26 30 0 0 chr13 27147112 27147145 -92597753 + AT_rich Low_complexity Low_complexity 1 33 0 1338 174 13 0 chr13 27147160 27147384 -92597514 - AluJo SINE Alu -84 228 2 2168 69 12 75 chr13 27147397 27147716 -92597182 - AluSg SINE Alu -11 299 1 237 281 47 16 chr13 27148061 27148125 -92596773 + L2 LINE L2 3239 3304 -9 1192 90 90 0 chr13 27148334 27148512 -92596386 + MER30 DNA MER1_type 1 194 -36 1895 137 24 3 chr13 27148812 27149105 -92595793 + AluJb SINE Alu 4 302 -10 2096 107 35 0 chr13 27149223 27149512 -92595386 + AluSx SINE Alu 1 299 -13 369 197 0 0 chr13 27149739 27149815 -92595083 + (TA)n Simple_repeat Simple_repeat 1 76 0 1973 132 13 10 chr13 27149815 27150118 -92594780 - AluSx SINE Alu -8 304 1 1870 145 24 3 chr13 27150484 27150773 -92594125 + AluJb SINE Alu 9 303 -9 1966 142 7 13 chr13 27150873 27151183 -92593715 - AluSx SINE Alu -4 308 1 871 114 8 15 chr13 27151375 27151507 -92593391 - FLAM_C SINE Alu -2 131 1 23 33 0 0 chr13 27151999 27152029 -92592869 + AT_rich Low_complexity Low_complexity 1 30 0 1885 135 20 3 chr13 27152913 27153216 -92591682 - AluSx SINE Alu -4 308 1 2008 99 3 58 chr13 27153339 27153651 -92591247 + AluSx SINE Alu 1 295 -17 423 307 147 13 chr13 27155261 27155492 -92589406 - MIR SINE MIR 0 262 1 252 302 65 36 chr13 27156186 27156325 -92588573 + L2 LINE L2 1786 1928 -1386 1690 157 14 38 chr13 27156390 27156683 -92588215 - AluJo SINE Alu -17 295 10 24 0 0 0 chr13 27156710 27156734 -92588164 + AT_rich Low_complexity Low_complexity 1 24 0 1336 85 0 0 chr13 27156734 27156898 -92588000 + AluY SINE Alu 122 285 -26 705 161 0 69 chr13 27156910 27157040 -92587858 - FLAM_C SINE Alu -14 129 9 189 0 0 0 chr13 27158007 27158028 -92586870 + (CA)n Simple_repeat Simple_repeat 2 22 0 574 27 27 0 chr13 27158182 27158257 -92586641 + MADE1 DNA Mariner 1 77 -3 1630 133 92 27 chr13 27158292 27158585 -92586313 - AluJb SINE Alu 0 312 1 1630 188 0 17 chr13 27158668 27158955 -92585943 - AluJb SINE Alu -28 284 3 2264 95 3 25 chr13 27159141 27159457 -92585441 - AluSc SINE Alu 0 309 1 181 176 0 29 chr13 27159734 27159768 -92585130 + MIR SINE MIR 157 189 -73 1812 145 34 17 chr13 27160904 27161201 -92583697 + AluJo SINE Alu 1 302 -10 183 80 0 0 chr13 27161210 27161235 -92583663 + (A)n Simple_repeat Simple_repeat 1 25 0 219 311 143 45 chr13 27161565 27161664 -92583234 + L2 LINE L2 1808 1896 -1418 2129 121 7 7 chr13 27161664 27161970 -92582928 - AluSx SINE Alu -6 306 1 219 311 143 45 chr13 27161970 27162387 -92582511 + L2 LINE L2 1896 2375 -939 27 29 0 0 chr13 27162411 27162445 -92582453 + AT_rich Low_complexity Low_complexity 1 34 0 195 288 15 30 chr13 27162666 27162732 -92582166 + L2 LINE L2 2590 2654 -660 186 240 120 53 chr13 27163222 27163297 -92581601 + L2 LINE L2 3155 3234 -38 1005 218 36 0 chr13 27163827 27164047 -92580851 - MER46A DNA MER2_type 0 236 9 492 195 160 50 chr13 27164284 27164567 -92580331 + MER2 DNA MER2_type 1 345 0 324 261 137 75 chr13 27164747 27165053 -92579845 - L1MC4a LINE L1 -1877 5931 5607 274 215 13 38 chr13 27165064 27165096 -92579802 + CT-rich Low_complexity Low_complexity 3 34 -45 210 37 0 0 chr13 27165096 27165123 -92579775 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 274 215 13 38 chr13 27165123 27165169 -92579729 + CT-rich Low_complexity Low_complexity 34 79 0 1492 175 0 12 chr13 27165175 27165426 -92579472 - AluJo SINE Alu -58 254 7 1364 197 45 31 chr13 27166259 27166549 -92578349 - AluJo SINE Alu -18 294 1 3672 279 54 16 chr13 27167040 27168363 -92576535 + L1MEc LINE L1 44 1417 -4979 805 232 143 36 chr13 27168417 27168697 -92576201 - MER2 DNA MER2_type -3 342 33 300 322 25 19 chr13 27168704 27168892 -92576006 + L1MEc LINE L1 1450 1681 -4620 * 421 189 74 0 chr13 27168876 27168971 -92575927 + L1MD3 LINE L1 7789 7890 -105 968 185 85 206 chr13 27169082 27169350 -92575548 + L1ME1 LINE L1 5260 5559 -607 591 139 111 0 chr13 27169350 27169458 -92575440 + FRAM SINE Alu 49 168 -8 968 185 85 206 chr13 27169458 27169801 -92575097 + L1ME1 LINE L1 5559 5885 -281 400 215 30 44 chr13 27171554 27171689 -92573209 + L1MB8 LINE L1 5879 6011 -167 325 261 52 15 chr13 27171733 27171867 -92573031 + L1MA10 LINE L1 6196 6334 0 2298 92 7 0 chr13 27172182 27172476 -92572422 + AluSx SINE Alu 1 296 -16 2076 149 3 0 chr13 27172648 27172957 -92571941 + AluSx SINE Alu 1 310 -2 26 64 0 0 chr13 27173433 27173480 -92571418 + AT_rich Low_complexity Low_complexity 1 47 0 21 82 0 0 chr13 27175902 27175951 -92568947 + AT_rich Low_complexity Low_complexity 1 49 0 32 26 0 0 chr13 27176475 27176514 -92568384 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr13 27177645 27177672 -92567226 + AT_rich Low_complexity Low_complexity 1 27 0 762 65 0 0 chr13 27178899 27179007 -92565891 - AluSp/q SINE Alu 0 313 206 2297 50 40 10 chr13 27179220 27179519 -92565379 - AluY SINE Alu -3 308 1 1276 201 38 45 chr13 27179981 27180269 -92564629 - AluJo SINE Alu -26 286 1 474 348 76 40 chr13 27180854 27181130 -92563768 - L3 LINE CR1 -29 1548 1263 24 0 0 0 chr13 27181567 27181591 -92563307 + AT_rich Low_complexity Low_complexity 1 24 0 243 358 82 0 chr13 27182874 27183008 -92561890 + MIR3 SINE MIR 57 201 -7 273 268 43 43 chr13 27184202 27184340 -92560558 - MLT1J1 LTR MaLR -21 425 288 798 183 26 37 chr13 27185100 27185291 -92559607 - MER5A DNA MER1_type 0 189 1 1027 190 5 19 chr13 27187051 27187256 -92557642 + AluJo SINE Alu 87 288 -24 180 0 0 0 chr13 27187259 27187279 -92557619 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 648 184 0 0 chr13 27187850 27187953 -92556945 + U6 snRNA snRNA 2 104 -3 48 18 0 0 chr13 27187953 27188008 -92556890 + AT_rich Low_complexity Low_complexity 1 55 0 2321 101 0 0 chr13 27188617 27188915 -92555983 - AluSx SINE Alu -14 298 1 218 329 14 0 chr13 27189269 27189342 -92555556 - MER5A DNA MER1_type -21 168 95 181 211 58 19 chr13 27189393 27189445 -92555453 + MER5A DNA MER1_type 136 189 0 634 233 7 14 chr13 27189543 27189689 -92555209 - FRAM SINE Alu -12 164 20 23 54 0 0 chr13 27189717 27189754 -92555144 + AT_rich Low_complexity Low_complexity 1 37 0 287 317 195 22 chr13 27190359 27190663 -92554235 + L2 LINE L2 2764 3124 -189 196 275 64 55 chr13 27190635 27190744 -92554154 - L3b LINE CR1 -298 1285 1176 * 348 24 0 0 chr13 27191031 27191072 -92553826 + (CA)n Simple_repeat Simple_repeat 2 42 0 1090 179 76 72 chr13 27191088 27191378 -92553520 - AluJo SINE Alu -11 291 1 328 327 12 36 chr13 27191616 27191781 -92553117 + MER5B DNA MER1_type 1 161 -17 630 139 0 0 chr13 27192120 27192221 -92552677 - FLAM_C SINE Alu -10 133 33 384 202 11 34 chr13 27193542 27193631 -92551267 - MER105 DNA DNA 0 204 118 456 67 0 0 chr13 27194510 27194570 -92550328 + (CA)n Simple_repeat Simple_repeat 2 61 0 29 70 0 0 chr13 27195771 27195828 -92549070 + AT_rich Low_complexity Low_complexity 1 57 0 1743 178 3 13 chr13 27196325 27196640 -92548258 + AluJb SINE Alu 1 312 0 291 236 82 50 chr13 27197879 27198044 -92546854 + L1MC4a LINE L1 5750 5922 -199 2403 164 216 12 chr13 27198173 27198772 -92546126 + Tigger7 DNA MER2_type 2 2478 -9 336 227 227 16 chr13 27198785 27198913 -92545985 + L2 LINE L2 3159 3313 0 270 0 0 0 chr13 27198918 27198948 -92545950 + (TG)n Simple_repeat Simple_repeat 2 31 0 261 0 0 0 chr13 27198947 27198976 -92545922 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 2135 134 0 7 chr13 27198976 27199282 -92545616 - AluSx SINE Alu -8 304 1 330 26 0 0 chr13 27199462 27199501 -92545397 + (TA)n Simple_repeat Simple_repeat 1 39 0 2380 98 0 0 chr13 27199501 27199807 -92545091 + AluSc SINE Alu 2 307 -2 926 149 0 12 chr13 27200945 27201113 -92543785 + L1MB4 LINE L1 6015 6180 0 1200 180 5 5 chr13 27201118 27201340 -92543558 + AluJb SINE Alu 88 309 -3 2440 72 0 7 chr13 27201656 27201961 -92542937 - AluY SINE Alu -8 303 1 429 226 12 0 chr13 27204752 27204836 -92540062 + L2 LINE L2 3188 3272 0 2321 95 0 0 chr13 27205201 27205497 -92539401 - AluSc SINE Alu -13 296 1 508 336 21 47 chr13 27205665 27205900 -92538998 + MIR SINE MIR 21 249 -13 512 219 34 8 chr13 27205907 27206026 -92538872 + MIR SINE MIR 131 252 -10 2083 124 30 0 chr13 27206211 27206509 -92538389 + AluSx SINE Alu 1 307 -5 360 260 68 62 chr13 27208012 27208158 -92536740 - MIR SINE MIR -66 196 50 2132 128 0 6 chr13 27208425 27208737 -92536161 + AluSx SINE Alu 1 310 -2 386 185 102 28 chr13 27208862 27208970 -92535928 + MIR3 SINE MIR 83 198 -10 257 210 67 134 chr13 27209058 27209177 -92535721 - L2 LINE L2 0 3313 3203 280 333 106 64 chr13 27209551 27209908 -92534990 - L2 LINE L2 -469 2845 2474 29 60 0 0 chr13 27210194 27210244 -92534654 + AT_rich Low_complexity Low_complexity 1 50 0 2359 74 3 10 chr13 27210532 27210830 -92534068 + AluY SINE Alu 1 296 -15 1076 131 11 23 chr13 27210830 27211006 -92533892 + AluSc SINE Alu 132 305 -4 850 164 7 33 chr13 27211006 27211158 -92533740 - MER2 DNA MER2_type -192 153 6 2098 120 0 46 chr13 27211302 27211627 -92533271 + AluSx SINE Alu 1 310 -2 319 245 10 10 chr13 27212859 27212957 -92531941 + (CAATA)n Simple_repeat Simple_repeat 3 100 0 1971 144 0 3 chr13 27217555 27217847 -92527051 - AluSx SINE Alu -21 291 1 620 141 0 10 chr13 27218415 27218514 -92526384 + MER4A LTR ERV1 1 98 -566 2151 97 169 29 chr13 27218514 27218863 -92526035 + MER4A LTR ERV1 261 658 -6 1831 171 0 7 chr13 27220728 27221038 -92523860 - AluJb SINE Alu -4 308 1 1645 271 73 38 chr13 27221806 27222446 -92522452 + MER115 DNA AcHobo 1 693 0 889 172 155 61 chr13 27222523 27222819 -92522079 + MER33 DNA MER1_type 1 324 0 249 276 0 40 chr13 27223168 27223244 -92521654 + MIR3 SINE MIR 125 197 -11 246 277 134 27 chr13 27223790 27223902 -92520996 - L2 LINE L2 -22 3291 3168 861 186 0 0 chr13 27224709 27224838 -92520060 - FLAM_A SINE Alu -4 129 1 396 0 0 0 chr13 27224902 27224946 -92519952 + (TG)n Simple_repeat Simple_repeat 2 45 0 248 261 125 34 chr13 27225872 27225960 -92518938 - L2 LINE L2 -8 3264 3169 676 311 28 16 chr13 27227009 27227257 -92517641 - MIR SINE MIR -10 252 2 29 84 0 0 chr13 27227601 27227672 -92517226 + AT_rich Low_complexity Low_complexity 1 71 0 1774 128 0 0 chr13 27228096 27228339 -92516559 + AluSq SINE Alu 1 243 -70 246 32 0 0 chr13 27228339 27228370 -92516528 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 201 116 23 23 chr13 27229694 27229737 -92515161 + (TA)n Simple_repeat Simple_repeat 1 43 0 279 114 0 0 chr13 27229899 27229943 -92514955 + (TTATG)n Simple_repeat Simple_repeat 2 45 0 1946 110 33 47 chr13 27229946 27230246 -92514652 - AluSx SINE Alu -16 296 1 218 360 46 39 chr13 27230251 27230404 -92514494 - MIR SINE MIR -62 200 47 2219 122 0 6 chr13 27230914 27231226 -92513672 + AluSg SINE Alu 1 310 0 2475 103 0 0 chr13 27231890 27232202 -92512696 + AluSx SINE Alu 1 312 0 289 276 92 0 chr13 27232543 27232630 -92512268 - MER5B DNA MER1_type 0 178 84 291 28 0 0 chr13 27233781 27233817 -92511081 + (TTA)n Simple_repeat Simple_repeat 1 36 0 809 148 41 0 chr13 27233817 27233939 -92510959 - FRAM SINE Alu -30 146 20 458 239 6 154 chr13 27234418 27234776 -92510122 - L1MC5 LINE L1 -56 7905 7647 1777 164 48 0 chr13 27236495 27236788 -92508110 - AluJb SINE Alu -5 307 1 536 282 31 37 chr13 27237831 27238048 -92506850 - MIR SINE MIR -19 243 37 2273 87 23 3 chr13 27238423 27238722 -92506176 + AluSp SINE Alu 1 305 -8 2041 110 4 0 chr13 27239430 27239874 -92505024 - AluSx SINE Alu 0 445 1 878 38 0 0 chr13 27239881 27239986 -92504912 - AluSg/x SINE Alu -3 307 203 201 360 67 11 chr13 27240970 27241059 -92503839 + MIR SINE MIR 1 94 -168 260 258 30 0 chr13 27241691 27241757 -92503141 + MIR SINE MIR 193 260 -2 233 372 43 11 chr13 27241789 27241883 -92503015 + L2 LINE L2 3165 3261 -11 2257 85 0 4 chr13 27242353 27242657 -92502241 + AluSp SINE Alu 3 305 0 734 236 82 52 chr13 27243209 27243442 -92501456 - MIR SINE MIR -21 241 2 370 288 92 26 chr13 27243669 27243822 -92501076 + MIR SINE MIR 85 247 -15 299 238 99 10 chr13 27244680 27244781 -92500117 + MIR SINE MIR 32 141 -67 541 170 217 9 chr13 27244825 27244931 -92499967 - FLAM_A SINE Alu -14 128 1 1568 137 47 36 chr13 27245728 27246026 -92498872 - AluJb SINE Alu 0 301 1 250 278 78 26 chr13 27246067 27246182 -92498716 + MIR SINE MIR 109 229 -33 2331 80 0 7 chr13 27246751 27247050 -92497848 + AluSc SINE Alu 1 297 -12 308 289 67 0 chr13 27249192 27249296 -92495602 - MIR SINE MIR -68 140 30 249 271 47 47 chr13 27250956 27251063 -92493835 - MIR SINE MIR -44 218 112 2006 136 40 0 chr13 27251269 27251570 -92493328 - AluSq SINE Alu 0 313 1 21 0 0 0 chr13 27251579 27251600 -92493298 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 27253051 27253079 -92491819 + AT_rich Low_complexity Low_complexity 1 28 0 311 328 147 58 chr13 27253739 27254065 -92490833 - L2 LINE L2 0 3272 2918 181 323 16 16 chr13 27254182 27254244 -92490654 + MIR SINE MIR 34 95 -113 382 231 154 19 chr13 27256025 27256181 -92488717 + MIR3 SINE MIR 27 203 -5 233 275 117 17 chr13 27258971 27259091 -92485807 - MIR SINE MIR -13 249 118 1046 161 118 0 chr13 27259999 27260185 -92484713 - MER3 DNA MER1_type -1 208 1 2337 94 0 0 chr13 27262063 27262362 -92482536 + AluSx SINE Alu 1 299 -13 598 290 50 18 chr13 27264232 27264453 -92480445 - MIR SINE MIR -21 241 14 261 157 39 0 chr13 27264861 27264912 -92479986 - L2 LINE L2 -11 3261 3209 1450 218 65 25 chr13 27266962 27267365 -92477533 + MLT1C LTR MaLR 3 421 -46 330 227 27 0 chr13 27267751 27267826 -92477072 - MIR3 SINE MIR -54 154 78 646 214 209 0 chr13 27268105 27268311 -92476587 + MIR SINE MIR 14 262 0 3831 153 91 15 chr13 27268341 27269000 -92475898 + MER50 LTR ERV1 1 709 -25 917 111 0 52 chr13 27269122 27269257 -92475641 + FLAM_C SINE Alu 2 129 -4 25 31 0 0 chr13 27269345 27269377 -92475521 + AT_rich Low_complexity Low_complexity 1 32 0 306 50 0 0 chr13 27270164 27270204 -92474694 + (CA)n Simple_repeat Simple_repeat 2 41 0 9450 212 41 75 chr13 27271341 27271622 -92473276 + L1M4 LINE L1 2311 2600 -3546 2014 138 7 0 chr13 27271622 27271912 -92472986 + AluSx SINE Alu 1 292 -20 9450 212 41 75 chr13 27271912 27272657 -92472241 + L1M4 LINE L1 2600 3369 -2777 2020 114 7 0 chr13 27272657 27272930 -92471968 + AluSx SINE Alu 1 275 -37 9450 212 41 75 chr13 27272930 27273124 -92471774 + L1M4 LINE L1 3369 3568 -2578 234 0 0 0 chr13 27273124 27273150 -92471748 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9450 212 41 75 chr13 27273150 27274750 -92470148 + L1M4 LINE L1 3568 5023 -1123 1601 173 14 28 chr13 27274750 27275039 -92469859 - AluJb SINE Alu -27 285 1 9450 212 41 75 chr13 27275039 27275283 -92469615 + L1M4 LINE L1 5023 5274 -872 259 209 45 9 chr13 27275283 27275393 -92469505 + (TA)n Simple_repeat Simple_repeat 2 115 0 4728 173 42 5 chr13 27275406 27276329 -92468569 + L1MB7 LINE L1 5221 6182 -2 1688 168 46 11 chr13 27276552 27276837 -92468061 + AluJo SINE Alu 1 295 -17 221 0 35 0 chr13 27277496 27277525 -92467373 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 346 175 25 0 chr13 27278191 27278271 -92466627 + GA-rich Low_complexity Low_complexity 3 84 0 478 298 77 17 chr13 27278382 27278563 -92466335 - MIR3 SINE MIR 0 208 17 1902 128 4 4 chr13 27278830 27279137 -92465761 + AluSx SINE Alu 1 307 0 731 289 88 22 chr13 27279520 27279838 -92465060 - MER102b DNA MER1_type -2 339 1 263 270 189 66 chr13 27279927 27280123 -92464775 + MIR SINE MIR 20 239 -23 467 285 118 57 chr13 27280226 27280472 -92464426 - L3 LINE CR1 -137 1440 1180 300 263 158 0 chr13 27280494 27280589 -92464309 - MIR SINE MIR -65 197 88 1047 16 0 0 chr13 27280812 27280933 -92463965 + (TTTCC)n Simple_repeat Simple_repeat 2 122 0 2052 122 4 0 chr13 27280934 27281213 -92463685 - AluSq SINE Alu -32 281 2 602 301 64 30 chr13 27281270 27281536 -92463362 - L3 LINE CR1 -647 930 656 492 241 196 77 chr13 27281576 27281862 -92463036 - L2 LINE L2 -1 3271 2952 246 237 110 68 chr13 27282012 27282130 -92462768 - MIR SINE MIR -21 241 119 270 254 0 0 chr13 27282273 27282328 -92462570 + MIR SINE MIR 61 115 -147 6055 165 33 44 chr13 27282365 27284305 -92460593 + L1MC1 LINE L1 4066 5963 -370 2389 96 0 0 chr13 27284305 27284608 -92460290 + AluSg SINE Alu 1 303 -7 6055 165 33 44 chr13 27284608 27284965 -92459933 + L1MC1 LINE L1 5963 6323 -10 201 121 0 0 chr13 27284967 27285000 -92459898 + (CA)n Simple_repeat Simple_repeat 2 34 0 389 271 90 8 chr13 27285001 27285123 -92459775 + MIR SINE MIR 128 259 -3 282 234 62 0 chr13 27285130 27285194 -92459704 - MIR SINE MIR -155 107 40 2053 120 40 7 chr13 27285713 27286014 -92458884 - AluSx SINE Alu -1 311 1 303 28 0 0 chr13 27288587 27288623 -92456275 + (CA)n Simple_repeat Simple_repeat 2 37 0 512 250 18 43 chr13 27288655 27288758 -92456140 + MER112 DNA MER1_type 69 168 -92 1002 202 18 0 chr13 27288758 27288926 -92455972 - FAM SINE Alu -4 171 1 512 250 18 43 chr13 27288926 27288986 -92455912 + MER112 DNA MER1_type 168 228 -32 401 95 27 27 chr13 27289359 27289433 -92455465 + Alu SINE Alu 238 311 0 203 271 119 0 chr13 27290802 27290861 -92454037 + MIR SINE MIR 125 190 -72 180 242 0 129 chr13 27291092 27291154 -92453744 + L2 LINE L2 3239 3292 -21 187 281 0 0 chr13 27291756 27291813 -92453085 + L2 LINE L2 3257 3313 0 391 323 19 7 chr13 27292140 27292295 -92452603 - MER117 DNA MER1_type 0 197 41 384 246 25 49 chr13 27292297 27292419 -92452479 - L2 LINE L2 0 3313 3195 2057 119 26 3 chr13 27293350 27293653 -92451245 + AluSx SINE Alu 1 310 -2 391 241 11 0 chr13 27294415 27294502 -92450396 - L2 LINE L2 -31 3241 3154 237 304 43 22 chr13 27295882 27295974 -92448924 + MIR SINE MIR 48 141 -67 444 252 34 42 chr13 27296194 27296313 -92448585 + MIR3 SINE MIR 75 192 -16 2005 174 137 0 chr13 27296319 27296692 -92448206 + MSTB LTR MaLR 1 424 -2 299 273 23 0 chr13 27296784 27296872 -92448026 + CT-rich Low_complexity Low_complexity 1 90 0 302 295 48 23 chr13 27297184 27297327 -92447571 + MIR SINE MIR 18 133 -75 1951 127 3 10 chr13 27297534 27297826 -92447072 - AluSx SINE Alu -9 303 14 21 36 0 0 chr13 27297831 27297859 -92447039 + AT_rich Low_complexity Low_complexity 1 28 0 2310 86 0 0 chr13 27298466 27298771 -92446127 - AluSq SINE Alu 0 310 6 279 287 103 29 chr13 27300493 27300629 -92444269 + MIR3 SINE MIR 61 206 -2 2662 170 32 54 chr13 27300687 27301140 -92443758 + L1MB8 LINE L1 5293 5754 -424 2348 103 0 0 chr13 27301140 27301450 -92443448 + AluSx SINE Alu 1 310 -2 2662 170 32 54 chr13 27301450 27301462 -92443436 + L1MB8 LINE L1 5754 5765 -413 1256 83 0 6 chr13 27301462 27301642 -92443256 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2662 170 32 54 chr13 27301642 27301769 -92443129 + L1MB8 LINE L1 5765 5873 -305 735 205 0 58 chr13 27301773 27301929 -92442969 + MLT1B LTR MaLR 192 338 -52 1942 133 18 4 chr13 27301951 27302257 -92442641 + AluSx SINE Alu 1 310 0 363 23 0 0 chr13 27302258 27302302 -92442596 + (CA)n Simple_repeat Simple_repeat 1 44 0 1839 98 16 112 chr13 27302302 27302668 -92442230 + L1MB7 LINE L1 5854 6184 0 216 135 0 0 chr13 27303882 27303919 -92440979 + (CA)n Simple_repeat Simple_repeat 1 37 0 249 310 60 9 chr13 27308068 27308184 -92436714 - L2 LINE L2 -59 3254 3133 188 333 58 33 chr13 27308238 27308358 -92436540 - L2 LINE L2 -179 3093 2971 393 22 0 0 chr13 27309215 27309261 -92435637 + (CA)n Simple_repeat Simple_repeat 2 47 0 306 172 0 17 chr13 27309339 27309397 -92435501 - L2 LINE L2 -1 3312 3256 1866 106 98 0 chr13 27309945 27310209 -92434689 + AluSp SINE Alu 2 291 -22 198 0 0 0 chr13 27310240 27310262 -92434636 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 234 91 0 0 chr13 27310266 27310299 -92434599 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 180 375 0 0 chr13 27311721 27311777 -92433121 + MIR SINE MIR 47 102 -160 200 351 37 12 chr13 27312541 27312646 -92432252 + MIR SINE MIR 30 133 -75 1427 36 24 0 chr13 27312696 27312862 -92432036 + L1PA4 LINE L1 5985 6154 -1 25 31 0 0 chr13 27312887 27312919 -92431979 + AT_rich Low_complexity Low_complexity 1 32 0 230 0 33 0 chr13 27313216 27313246 -92431652 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 610 253 58 25 chr13 27313412 27313825 -92431073 + MLT1H LTR MaLR 79 549 0 1012 159 23 0 chr13 27314675 27314851 -92430047 + MER5A DNA MER1_type 1 180 -9 831 225 18 0 chr13 27314851 27315020 -92429878 - MER5B DNA MER1_type -4 174 3 2058 141 0 7 chr13 27315888 27316185 -92428713 + AluSx SINE Alu 1 295 -17 265 179 0 0 chr13 27316308 27316364 -92428534 - MER5A DNA MER1_type -131 58 3 208 375 103 54 chr13 27317101 27317490 -92427408 - L2 LINE L2 0 3272 2865 405 295 79 7 chr13 27317844 27317983 -92426915 + MIR3 SINE MIR 41 189 -19 250 223 64 64 chr13 27319538 27319632 -92425266 - MIR3 SINE MIR 0 208 115 21 57 0 0 chr13 27321360 27321395 -92423503 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 27322698 27322720 -92422178 + GC_rich Low_complexity Low_complexity 1 22 0 237 330 71 0 chr13 27326088 27326200 -92418698 - L3 LINE CR1 -298 1279 1160 616 323 77 21 chr13 27326637 27326975 -92417923 - L3 LINE CR1 -572 1005 649 276 100 0 0 chr13 27326984 27327024 -92417874 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 253 159 63 63 chr13 27327529 27327592 -92417306 - L1ME4a LINE L1 -91 6030 5968 234 256 110 49 chr13 27328473 27328637 -92416261 - L2 LINE L2 -801 2513 2340 789 169 0 0 chr13 27328712 27328851 -92416047 + FLAM_A SINE Alu 1 139 0 3456 152 16 25 chr13 27329049 27329752 -92415146 - L1MB3 LINE L1 -330 5853 5160 321 307 108 48 chr13 27329931 27330309 -92414589 + L2 LINE L2 1987 2387 -927 931 159 90 16 chr13 27330619 27330808 -92414090 + MER20 DNA MER1_type 16 218 -1 1044 202 88 86 chr13 27330841 27331128 -92413770 + LTR16A1 LTR ERVL 26 316 -141 1571 194 80 14 chr13 27331128 27331479 -92413419 + MLT1A2 LTR MaLR 1 374 0 1044 202 88 86 chr13 27331479 27331622 -92413276 + LTR16A1 LTR ERVL 316 457 0 2247 119 61 3 chr13 27331933 27332277 -92412621 - THE1B LTR MaLR 0 364 1 219 290 94 22 chr13 27332332 27332470 -92412428 + L2 LINE L2 2710 2857 -457 2369 85 0 0 chr13 27332669 27332975 -92411923 - AluSx SINE Alu -6 306 1 496 282 122 0 chr13 27333154 27333310 -92411588 + MIR SINE MIR 12 186 -76 361 293 49 16 chr13 27333597 27333720 -92411178 - L2 LINE L2 -227 3045 2919 23 0 0 0 chr13 27333876 27333899 -92410999 + AT_rich Low_complexity Low_complexity 1 23 0 266 302 115 62 chr13 27333899 27334091 -92410807 - L2 LINE L2 -449 2865 2664 2083 105 7 3 chr13 27334346 27334640 -92410258 - AluSx SINE Alu -17 295 1 1255 310 76 54 chr13 27335165 27335579 -92409319 - L2 LINE L2 -585 2729 2325 1894 162 25 11 chr13 27335579 27335937 -92408961 + L1MA4 LINE L1 5937 6299 -1 1255 310 76 54 chr13 27335937 27336499 -92408399 - L2 LINE L2 -989 2325 1732 443 288 120 11 chr13 27336514 27336698 -92408200 + MER63A DNA MER1_type 5 208 -2 233 97 0 0 chr13 27337060 27337091 -92407807 + MSTB LTR MaLR 1 31 -395 1368 157 122 8 chr13 27338531 27338793 -92406105 - AluJo SINE Alu -16 296 5 222 283 0 0 chr13 27338969 27339022 -92405876 - L2 LINE L2 0 3272 3220 191 167 24 0 chr13 27339540 27339582 -92405316 + (TTA)n Simple_repeat Simple_repeat 3 45 0 407 287 109 11 chr13 27339589 27339763 -92405135 - L2 LINE L2 -16 3297 3107 235 284 12 12 chr13 27339766 27339847 -92405051 + L1MEd LINE L1 4 84 -6035 1200 110 0 0 chr13 27339910 27340083 -92404815 + AluSg/x SINE Alu 138 310 -2 1225 175 4 63 chr13 27341030 27341298 -92403600 - AluJo SINE Alu -22 290 39 355 357 77 0 chr13 27341526 27341694 -92403204 + L2 LINE L2 3091 3271 -1 1130 122 22 100 chr13 27342394 27342623 -92402275 - AluJo SINE Alu -23 289 79 220 214 22 67 chr13 27342876 27342965 -92401933 + T-rich Low_complexity Low_complexity 2 86 0 635 158 0 22 chr13 27343071 27343255 -92401643 + (CA)n Simple_repeat Simple_repeat 1 180 0 415 195 23 6 chr13 27343266 27343440 -92401458 + (CA)n Simple_repeat Simple_repeat 1 177 0 242 235 84 101 chr13 27344157 27344276 -92400622 + L2 LINE L2 3148 3264 -8 180 111 0 0 chr13 27345061 27345088 -92399810 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1387 113 5 0 chr13 27345130 27345333 -92399565 - AluSp SINE Alu -16 297 94 1498 152 40 14 chr13 27347374 27347679 -92397219 - AluJb SINE Alu 0 312 1 1693 168 42 0 chr13 27347744 27348030 -92396868 - AluSx SINE Alu -14 298 1 1315 150 0 141 chr13 27348095 27348455 -92396443 - AluJb SINE Alu 0 318 5 1527 205 16 44 chr13 27348923 27349289 -92395609 - MLT1A1 LTR MaLR 0 365 10 192 40 0 0 chr13 27349486 27349511 -92395387 + (CA)n Simple_repeat Simple_repeat 1 25 0 389 314 17 0 chr13 27349713 27349831 -92395067 - MIR SINE MIR -90 172 53 1384 157 12 0 chr13 27350152 27350400 -92394498 + L1MA8 LINE L1 6037 6287 -4 2147 99 23 0 chr13 27350875 27351177 -92393721 - AluSc SINE Alu 0 309 1 631 110 0 11 chr13 27351177 27351268 -92393630 - L1MC1 LINE L1 -10 6323 6234 317 324 10 10 chr13 27351763 27351875 -92393023 + MIR SINE MIR 41 151 -72 890 145 11 102 chr13 27352555 27352741 -92392157 - MER45A DNA AcHobo -5 173 5 2141 125 0 0 chr13 27352855 27353167 -92391731 - AluSx SINE Alu 0 312 1 580 243 38 19 chr13 27353415 27353625 -92391273 + L1 LINE L1 5148 5361 -785 22 0 0 0 chr13 27353760 27353782 -92391116 + AT_rich Low_complexity Low_complexity 1 22 0 2526 40 0 0 chr13 27353815 27354112 -92390786 - AluY SINE Alu -14 297 1 22 35 0 0 chr13 27354771 27354800 -92390098 + AT_rich Low_complexity Low_complexity 1 29 0 299 238 10 0 chr13 27354866 27354967 -92389931 + L1MA4 LINE L1 6196 6297 -3 392 168 106 9 chr13 27355819 27355932 -92388966 - MIR3 SINE MIR -1 207 84 881 270 37 4 chr13 27356219 27356460 -92388438 + MIR SINE MIR 10 258 -4 1707 160 17 3 chr13 27357779 27358072 -92386826 - AluJo SINE Alu -15 297 1 1199 123 39 15 chr13 27358832 27359035 -92385863 + AluJo SINE Alu 83 290 -22 845 267 125 86 chr13 27359121 27359575 -92385323 - MLT1L LTR MaLR 0 615 131 462 36 0 0 chr13 27359575 27359631 -92385267 + (CA)n Simple_repeat Simple_repeat 2 57 0 845 267 125 86 chr13 27359631 27359768 -92385130 - MLT1L LTR MaLR -484 131 1 350 268 125 18 chr13 27359940 27360052 -92384846 + MIR3 SINE MIR 73 196 -12 230 245 20 0 chr13 27360182 27360231 -92384667 - L2 LINE L2 0 3272 3223 331 203 153 17 chr13 27360262 27360380 -92384518 + MLT1J LTR MaLR 336 469 -42 1750 166 75 51 chr13 27360425 27360503 -92384395 + MLT1B LTR MaLR 1 76 -314 2154 111 3 0 chr13 27360503 27360809 -92384089 - AluSx SINE Alu -5 307 1 1750 166 75 51 chr13 27360809 27360833 -92384065 + MLT1B LTR MaLR 76 98 -292 1404 186 86 43 chr13 27360833 27361038 -92383860 - MLT1A1 LTR MaLR -1 364 135 2131 95 3 0 chr13 27361038 27361357 -92383541 - AluSq SINE Alu 0 320 1 1404 186 86 43 chr13 27361357 27361499 -92383399 - MLT1A1 LTR MaLR -230 135 1 1750 166 75 51 chr13 27361499 27361769 -92383129 + MLT1B LTR MaLR 98 383 -7 322 286 77 51 chr13 27361943 27362139 -92382759 + L1M4 LINE L1 3220 3420 -2726 22 35 0 0 chr13 27362686 27362715 -92382183 + AT_rich Low_complexity Low_complexity 1 29 0 511 148 23 23 chr13 27362891 27363019 -92381879 + GA-rich Low_complexity Low_complexity 1 128 0 646 156 63 1 chr13 27363206 27363335 -92381563 + L1MB8 LINE L1 5730 5873 -295 735 205 0 58 chr13 27363339 27363495 -92381403 + MLT1B LTR MaLR 192 338 -52 1560 141 4 0 chr13 27363516 27363750 -92381148 + AluSx SINE Alu 1 235 -77 1563 187 7 11 chr13 27364698 27365005 -92379893 + AluJo SINE Alu 3 308 0 467 153 27 121 chr13 27366498 27366537 -92378361 - L1ME1 LINE L1 0 6334 6293 631 165 55 31 chr13 27366537 27366664 -92378234 + FLAM_A SINE Alu 1 130 -3 467 153 27 121 chr13 27366664 27366753 -92378145 - L1ME1 LINE L1 -41 6293 6058 228 154 0 0 chr13 27366753 27366792 -92378106 - MER3 DNA MER1_type -160 49 11 2488 204 8 20 chr13 27366792 27367288 -92377610 - L1ME1 LINE L1 -148 6018 5529 2423 67 0 0 chr13 27367452 27367749 -92377149 + AluY SINE Alu 1 297 -14 284 321 42 60 chr13 27368150 27368318 -92376580 - L3 LINE CR1 -211 1366 1202 2110 42 109 14 chr13 27368759 27369043 -92375855 + AluY SINE Alu 1 311 0 3567 214 94 70 chr13 27369214 27370692 -92374206 + MER109 Unknown Unknown 7 1412 -1020 237 275 49 21 chr13 27370975 27371117 -92373781 + (CCCG)n Simple_repeat Simple_repeat 4 149 0 30 45 0 0 chr13 27371316 27371360 -92373538 + GC_rich Low_complexity Low_complexity 1 44 0 1801 132 11 14 chr13 27372231 27372511 -92372387 + AluJo SINE Alu 4 282 -30 251 284 0 0 chr13 27373201 27373268 -92371630 + MER52A LTR ERV1 1 67 -1688 811 213 58 45 chr13 27373464 27373740 -92371158 + MER52A LTR ERV1 26 357 -921 257 246 0 31 chr13 27373989 27374054 -92370844 + MLT1I LTR MaLR 345 407 -2 11509 189 63 32 chr13 27374138 27375281 -92369617 - L1MCa LINE L1 -2557 3869 2763 1865 129 80 0 chr13 27375281 27375567 -92369331 - AluSx SINE Alu -1 311 3 11509 189 63 32 chr13 27375567 27376149 -92368749 - L1MCa LINE L1 -3663 2763 2201 1657 96 0 0 chr13 27376149 27376357 -92368541 - AluSg/x SINE Alu -18 294 87 11509 189 63 32 chr13 27376357 27377384 -92367514 - L1MCa LINE L1 -4225 2201 1208 1871 125 0 11 chr13 27377384 27377648 -92367250 + AluSx SINE Alu 39 299 -13 11509 189 63 32 chr13 27377648 27377732 -92367166 - L1MCa LINE L1 -5218 1208 1128 1619 121 0 14 chr13 27377732 27377955 -92366943 - AluSg SINE Alu -84 226 7 11509 189 63 32 chr13 27377955 27378207 -92366691 - L1MCa LINE L1 -5298 1128 885 1953 91 80 4 chr13 27378207 27378481 -92366417 - AluSc SINE Alu -14 295 1 11509 189 63 32 chr13 27378481 27379114 -92365784 - L1MCa LINE L1 -5541 885 32 736 193 22 7 chr13 27379208 27379343 -92365555 + AluJb SINE Alu 117 253 -59 5049 75 5 30 chr13 27379343 27379814 -92365084 + L1PB1 LINE L1 5502 5953 -198 2105 106 7 14 chr13 27379814 27380106 -92364792 + AluSx SINE Alu 1 290 -22 5049 75 5 30 chr13 27380106 27380300 -92364598 + L1PB1 LINE L1 5953 6150 -1 1919 252 85 41 chr13 27380323 27381229 -92363669 + HAL1b LINE L1 62 1007 -341 303 273 23 76 chr13 27381273 27381445 -92363453 + HAL1b LINE L1 1115 1277 -71 894 422 26 49 chr13 27381459 27381767 -92363131 + AluJo SINE Alu 1 301 -1 181 148 19 19 chr13 27381815 27381869 -92363029 + (TA)n Simple_repeat Simple_repeat 2 55 0 1942 118 37 0 chr13 27381907 27382177 -92362721 - AluSx SINE Alu -32 280 1 753 251 11 6 chr13 27382432 27382607 -92362291 - MER5B DNA MER1_type -2 176 1 22 35 0 0 chr13 27382729 27382758 -92362140 + AT_rich Low_complexity Low_complexity 1 29 0 5370 123 15 15 chr13 27382882 27383383 -92361515 - L1PA15 LINE L1 0 6165 5662 1900 72 8 0 chr13 27383383 27383618 -92361280 - AluSg SINE Alu -13 297 61 5370 123 15 15 chr13 27383618 27383928 -92360970 - L1PA15 LINE L1 -502 5663 5354 401 215 123 23 chr13 27383936 27384066 -92360832 - MIR SINE MIR -118 144 2 210 279 33 0 chr13 27384585 27384646 -92360252 + MIR SINE MIR 127 189 -73 1834 88 4 0 chr13 27384934 27385172 -92359726 - AluSx SINE Alu -10 302 64 2219 157 8 8 chr13 27386474 27386837 -92358061 - L1PA16 LINE L1 -2 6164 5802 218 275 8 100 chr13 27386847 27386967 -92357931 - MIR SINE MIR -139 123 15 451 162 162 20 chr13 27387959 27388058 -92356840 + FLAM_A SINE Alu 2 114 -19 390 225 54 133 chr13 27388283 27388500 -92356398 - MIR SINE MIR -6 256 58 2189 180 23 2 chr13 27388500 27388895 -92356003 - L1MB2 LINE L1 0 6171 5769 390 225 54 133 chr13 27388895 27388925 -92355973 - MIR SINE MIR -204 58 27 1542 183 6 45 chr13 27389866 27390178 -92354720 + AluJb SINE Alu 1 300 -12 852 122 0 68 chr13 27390594 27390741 -92354157 - FLAM_C SINE Alu -6 137 1 3860 122 125 49 chr13 27390979 27391709 -92353189 + LTR1 LTR ERV1 1 785 0 2312 123 0 0 chr13 27392786 27393096 -92351802 + AluSx SINE Alu 1 310 -2 184 259 62 12 chr13 27394119 27394200 -92350698 - MIR SINE MIR -52 210 126 198 359 51 0 chr13 27394287 27394365 -92350533 - MIR SINE MIR -24 238 157 200 365 56 0 chr13 27394541 27394648 -92350250 + L2 LINE L2 3142 3254 -18 1675 146 0 19 chr13 27394655 27394923 -92349975 + AluJo SINE Alu 34 296 -16 224 189 0 0 chr13 27395162 27395199 -92349699 - MIR SINE MIR -70 192 156 21 57 0 0 chr13 27395317 27395352 -92349546 + AT_rich Low_complexity Low_complexity 1 35 0 338 301 76 65 chr13 27395353 27395629 -92349269 - L1ME3A LINE L1 -98 6072 5794 466 277 36 15 chr13 27395691 27395828 -92349070 - MIR SINE MIR -119 143 4 480 58 207 69 chr13 27396781 27396868 -92348030 + HY3 scRNA scRNA 1 99 -2 2302 113 0 0 chr13 27396870 27397171 -92347727 - AluSq SINE Alu -12 301 1 708 319 42 7 chr13 27397399 27397537 -92347361 - LTR16C LTR ERVL -6 485 353 2512 83 0 0 chr13 27397537 27397849 -92347049 + AluSx SINE Alu 1 312 0 708 319 42 7 chr13 27397849 27397998 -92346900 - LTR16C LTR ERVL -138 353 188 337 199 139 60 chr13 27398124 27398275 -92346623 - L1ME4a LINE L1 -229 5892 5730 657 243 83 17 chr13 27399029 27399210 -92345688 - MIR SINE MIR -47 215 23 2371 96 3 6 chr13 27399465 27399779 -92345119 - AluSq SINE Alu 0 313 1 634 168 23 30 chr13 27400276 27400407 -92344491 - FLAM_A SINE Alu 0 133 4 207 100 0 0 chr13 27400494 27400524 -92344374 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 334 267 22 0 chr13 27400570 27400660 -92344238 - L1MC4 LINE L1 -1337 6705 6614 582 228 0 0 chr13 27400665 27400977 -92343921 + (TA)n Simple_repeat Simple_repeat 1 312 0 319 308 0 0 chr13 27400978 27401069 -92343829 - L1MC4 LINE L1 -1339 6703 6613 234 290 14 14 chr13 27401337 27401406 -92343492 + L3 LINE CR1 327 395 -1182 472 240 106 39 chr13 27401540 27401719 -92343179 + L3 LINE CR1 1206 1396 -181 672 184 22 7 chr13 27402300 27402436 -92342462 + L1MC2 LINE L1 6082 6219 -125 890 163 34 34 chr13 27402436 27402614 -92342284 + AluJo SINE Alu 121 298 -14 569 210 17 17 chr13 27402623 27402742 -92342156 + L1MC2 LINE L1 6226 6344 0 306 359 84 18 chr13 27402902 27403069 -92341829 + L3 LINE CR1 1398 1575 -2 1933 139 0 37 chr13 27404324 27404619 -92340279 + AluJo SINE Alu 1 284 -28 204 67 0 0 chr13 27404619 27404649 -92340249 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 27405037 27405058 -92339840 + AT_rich Low_complexity Low_complexity 1 21 0 908 137 0 0 chr13 27405556 27405680 -92339218 - FLAM_C SINE Alu -17 126 3 525 272 147 5 chr13 27406185 27406376 -92338522 + MIR SINE MIR 2 219 -43 2187 114 10 0 chr13 27407093 27407390 -92337508 + AluSx SINE Alu 1 300 -12 22 70 0 0 chr13 27407534 27407577 -92337321 + AT_rich Low_complexity Low_complexity 1 43 0 1980 157 14 0 chr13 27408811 27409105 -92335793 - AluJo SINE Alu -14 298 1 247 390 19 0 chr13 27409792 27409897 -92335001 + MIR SINE MIR 24 130 -78 2368 72 6 28 chr13 27410051 27410371 -92334527 - AluSq SINE Alu 0 313 1 511 280 89 54 chr13 27410653 27410901 -92333997 + L2 LINE L2 2192 2430 -884 1702 155 56 25 chr13 27410901 27411185 -92333713 + AluJo SINE Alu 1 293 -19 2444 68 7 0 chr13 27411189 27411498 -92333400 + AluY SINE Alu 1 311 0 511 280 89 54 chr13 27411498 27411558 -92333340 + L2 LINE L2 2432 2516 -798 433 308 168 22 chr13 27411644 27412050 -92332848 + L2 LINE L2 2794 3272 0 1834 164 10 3 chr13 27412152 27412451 -92332447 + AluJb SINE Alu 2 302 -10 1010 149 30 6 chr13 27412453 27412621 -92332277 + AluJo/FRAM SINE Alu 128 299 -13 1389 269 91 61 chr13 27413008 27413060 -92331838 + L1M4 LINE L1 3463 3512 -2634 1978 117 17 7 chr13 27413060 27413378 -92331520 + AluSq SINE Alu 1 313 0 1389 269 91 61 chr13 27413378 27414269 -92330629 + L1M4 LINE L1 3512 4434 -1712 715 208 8 0 chr13 27414272 27414392 -92330506 - FLAM_C SINE Alu -10 123 3 987 306 57 26 chr13 27414409 27414785 -92330113 + L1ME4a LINE L1 3588 3992 -2154 1191 265 104 19 chr13 27414785 27415200 -92329698 - MLT1J2 LTR MaLR 0 450 1 987 306 57 26 chr13 27415200 27415438 -92329460 + L1ME4a LINE L1 3992 4221 -1925 268 111 0 0 chr13 27416220 27416256 -92328642 + MLT1I LTR MaLR 370 405 -4 477 253 92 89 chr13 27416259 27416563 -92328335 - MLT1I LTR MaLR -14 395 91 2150 122 0 16 chr13 27416563 27416875 -92328023 - AluSx SINE Alu -5 307 1 1224 272 43 6 chr13 27417165 27417489 -92327409 + MLT1I LTR MaLR 74 409 0 2063 165 20 17 chr13 27417559 27417905 -92326993 + MER7A DNA MER2_type 1 345 -1 298 230 105 47 chr13 27417927 27418118 -92326780 + L1ME4a LINE L1 4457 4658 -1488 303 306 9 27 chr13 27418119 27418230 -92326668 + MIR SINE MIR 154 262 0 309 278 80 20 chr13 27418297 27418448 -92326450 + L1ME4a LINE L1 4930 5089 -1057 311 308 36 36 chr13 27418591 27418812 -92326086 + L1ME4a LINE L1 5255 5475 -2333 465 243 77 0 chr13 27420666 27420835 -92324063 + L1ME4a LINE L1 5938 6119 -2 2586 62 0 0 chr13 27421897 27422203 -92322695 - AluY SINE Alu -5 306 1 1629 155 3 44 chr13 27422489 27422786 -92322112 - AluJb SINE Alu -22 290 6 354 200 80 38 chr13 27422884 27423047 -92321851 + LTR16A LTR ERVL 1 168 -282 532 299 116 39 chr13 27423052 27423332 -92321566 + L2 LINE L2 2852 3176 -137 819 145 15 8 chr13 27423332 27423463 -92321435 - FLAM_C SINE Alu 0 133 2 532 299 116 39 chr13 27423463 27423597 -92321301 + L2 LINE L2 3176 3298 -15 321 215 65 102 chr13 27423761 27423947 -92320951 - MER97c DNA MER1_type? 0 1090 716 352 202 167 0 chr13 27423959 27424043 -92320855 - MLT1I LTR MaLR -469 98 1 * 872 179 100 22 chr13 27424043 27424248 -92320650 - MER97c DNA MER1_type? -864 226 4 2184 177 34 45 chr13 27424285 27424753 -92320145 + MLT1C LTR MaLR 1 463 -4 738 214 0 0 chr13 27424869 27424986 -92319912 + FLAM_C SINE Alu 2 118 -15 22 35 0 0 chr13 27425006 27425035 -92319863 + AT_rich Low_complexity Low_complexity 1 29 0 2448 80 3 0 chr13 27425665 27425967 -92318931 - AluSx SINE Alu -7 305 3 331 225 233 8 chr13 27426940 27427060 -92317838 + MIR SINE MIR 116 262 0 315 362 86 18 chr13 27427511 27427848 -92317050 + L2 LINE L2 2618 2977 -337 1925 160 0 19 chr13 27427907 27428220 -92316678 - AluSx SINE Alu -5 307 1 257 347 113 20 chr13 27428220 27428361 -92316537 + L2 LINE L2 3106 3263 -9 540 261 0 36 chr13 27428699 27428837 -92316061 + FLAM_A SINE Alu 1 133 0 181 271 0 43 chr13 27428873 27428943 -92315955 + L2 LINE L2 2836 2902 -412 427 258 123 31 chr13 27429145 27429308 -92315590 + MIR SINE MIR 84 261 -1 274 333 28 9 chr13 27429372 27429480 -92315418 + L2 LINE L2 3161 3270 -2 336 282 145 0 chr13 27429493 27429610 -92315288 + MIR SINE MIR 59 192 -70 321 298 145 45 chr13 27429938 27430180 -92314718 - L1M2 LINE L1 -5599 1250 985 2339 156 14 0 chr13 27431001 27431360 -92313538 + MER47A DNA MER2_type 3 366 0 292 293 95 0 chr13 27431373 27431489 -92313409 - MIR3 SINE MIR -52 156 30 208 313 94 10 chr13 27431655 27431751 -92313147 - L2 LINE L2 -647 2667 2564 1798 163 0 10 chr13 27431955 27432266 -92312632 + AluJb SINE Alu 1 308 0 314 277 0 0 chr13 27432356 27432421 -92312477 + L2 LINE L2 3242 3306 -7 23 54 0 0 chr13 27433146 27433183 -92311715 + AT_rich Low_complexity Low_complexity 1 37 0 796 291 57 0 chr13 27433626 27433873 -92311025 + MIR SINE MIR 2 262 0 2197 114 3 0 chr13 27434085 27434392 -92310506 - AluSp SINE Alu -5 308 1 197 225 75 0 chr13 27434806 27434846 -92310052 + L2 LINE L2 3214 3256 -16 469 223 25 33 chr13 27435097 27435218 -92309680 - L1ME1 LINE L1 -41 6125 6006 180 413 73 34 chr13 27435737 27435943 -92308955 - L2 LINE L2 -54 3218 3005 866 333 138 52 chr13 27436189 27437265 -92307633 + L3 LINE CR1 1 1168 -409 239 313 196 9 chr13 27437380 27437492 -92307406 + MIR SINE MIR 23 155 -107 1154 139 0 97 chr13 27437585 27437823 -92307075 + MER20 DNA MER1_type 1 215 -4 181 214 157 29 chr13 27437831 27437901 -92306997 + L2 LINE L2 3139 3217 -55 1036 131 50 0 chr13 27438026 27438186 -92306712 + FAM SINE Alu 1 168 -7 233 355 66 28 chr13 27439405 27439616 -92305282 + L2 LINE L2 1292 1510 -1804 288 177 0 32 chr13 27439617 27439679 -92305219 - L2 LINE L2 -973 2341 2282 739 308 186 35 chr13 27439708 27440151 -92304747 + L2 LINE L2 1505 1880 -1434 1489 172 0 15 chr13 27440151 27440413 -92304485 - AluJo SINE Alu -6 306 49 739 308 186 35 chr13 27440413 27440608 -92304290 + L2 LINE L2 1880 2044 -1270 1887 149 0 14 chr13 27440608 27440903 -92303995 + AluJb SINE Alu 3 293 -19 739 308 186 35 chr13 27440903 27441342 -92303556 + L2 LINE L2 2044 2746 -568 2356 89 0 0 chr13 27441546 27441838 -92303060 + AluSq SINE Alu 1 292 -21 395 258 65 52 chr13 27441947 27442102 -92302796 + MIR SINE MIR 47 203 -59 452 215 129 0 chr13 27442662 27442755 -92302143 + FLAM_A SINE Alu 1 105 -37 253 281 0 0 chr13 27443262 27443319 -92301579 - L2 LINE L2 -69 3244 3188 985 83 15 8 chr13 27443400 27443532 -92301366 + AluSq/x SINE Alu 1 133 -180 2409 85 0 0 chr13 27443855 27444150 -92300748 - AluSg SINE Alu -15 295 1 375 222 191 16 chr13 27444597 27444723 -92300175 - L2 LINE L2 -19 3294 3147 1362 224 120 19 chr13 27444897 27445313 -92299585 - LTR40b LTR ERVL -4 458 1 423 371 10 10 chr13 27445329 27445534 -92299364 - L2 LINE L2 -420 2894 2690 1601 152 27 40 chr13 27445538 27445835 -92299063 + AluJo SINE Alu 1 293 -19 871 69 9 9 chr13 27445927 27446043 -92298855 - AluSg/x SINE Alu -12 300 185 4318 129 33 14 chr13 27446205 27446556 -92298342 - L1MB3 LINE L1 -1 6182 5839 2153 114 0 29 chr13 27446556 27446871 -92298027 - AluSq SINE Alu -7 306 1 4318 129 33 14 chr13 27446871 27447211 -92297687 - L1MB3 LINE L1 -344 5839 5478 254 287 81 59 chr13 27447253 27447389 -92297509 + MER5A DNA MER1_type 1 139 -50 378 0 0 0 chr13 27447389 27447431 -92297467 + (TG)n Simple_repeat Simple_repeat 1 42 0 1773 144 33 0 chr13 27447433 27447703 -92297195 - AluJo SINE Alu -33 279 1 939 236 68 84 chr13 27448457 27448911 -92295987 - MER39 LTR ERV1 0 707 261 1794 147 17 13 chr13 27449074 27449373 -92295525 - AluJo SINE Alu -12 300 1 4513 80 5 0 chr13 27449828 27450379 -92294519 - MER41A LTR ERV1 0 554 1 328 286 20 10 chr13 27451045 27451143 -92293755 - MER5A DNA MER1_type -80 109 11 2209 105 20 0 chr13 27451455 27451749 -92293149 - AluSx SINE Alu -12 300 1 1330 192 65 73 chr13 27452354 27452724 -92292174 - MER93b LTR ERV1 0 373 7 2301 97 0 0 chr13 27452734 27453023 -92291875 - AluSq SINE Alu -24 289 1 657 200 200 0 chr13 27453242 27453407 -92291491 + MSTB1 LTR MaLR 1 198 -259 333 0 0 0 chr13 27453417 27453454 -92291444 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 606 191 0 0 chr13 27453467 27453561 -92291337 - FLAM_A SINE Alu -36 106 13 1016 178 44 40 chr13 27453561 27453786 -92291112 + MSTB1 LTR MaLR 170 395 -37 409 264 89 72 chr13 27453843 27454103 -92290795 + MLT1I LTR MaLR 102 369 -40 180 0 0 0 chr13 27454103 27454123 -92290775 + (TG)n Simple_repeat Simple_repeat 2 21 0 409 264 89 72 chr13 27454123 27454154 -92290744 + MLT1I LTR MaLR 369 398 -11 1393 171 0 17 chr13 27455030 27455269 -92289629 + AluJb SINE Alu 76 310 -2 733 283 57 9 chr13 27455339 27455569 -92289329 + MIR SINE MIR 4 244 -18 593 247 19 13 chr13 27455647 27455805 -92289093 + MIR SINE MIR 84 242 -20 1065 170 0 66 chr13 27456678 27456713 -92288185 + AluJo SINE Alu 87 123 -189 2231 113 0 3 chr13 27456713 27457014 -92287884 - AluSx SINE Alu -12 300 1 1065 170 0 66 chr13 27457014 27457219 -92287679 + AluJo SINE Alu 123 311 -1 754 126 15 7 chr13 27457219 27457354 -92287544 + GA-rich Low_complexity Low_complexity 1 136 0 609 126 42 14 chr13 27457390 27457533 -92287365 + GA-rich Low_complexity Low_complexity 2 148 0 3075 143 10 8 chr13 27457848 27458329 -92286569 + MER31A LTR ERV1 4 485 0 29 0 0 0 chr13 27459689 27459718 -92285180 + AT_rich Low_complexity Low_complexity 1 29 0 1305 117 44 19 chr13 27459832 27460038 -92284860 + AluSg/x SINE Alu 81 291 -19 1242 191 23 27 chr13 27460417 27460679 -92284219 + AluJo SINE Alu 42 302 -10 180 0 0 0 chr13 27460859 27460879 -92284019 + (A)n Simple_repeat Simple_repeat 1 20 0 263 208 0 0 chr13 27462119 27462167 -92282731 - MER5B DNA MER1_type 0 178 131 1747 154 0 40 chr13 27462209 27462508 -92282390 - AluJo SINE Alu -25 287 1 4372 57 21 4 chr13 27462526 27463085 -92281813 + L1P3 LINE L1 1068 1636 -4825 2016 115 11 7 chr13 27463260 27463547 -92281351 - AluSx SINE Alu -24 288 1 491 365 12 0 chr13 27464553 27464723 -92280175 - L2 LINE L2 -280 3033 2862 241 379 0 11 chr13 27464730 27464825 -92280073 + L2 LINE L2 3142 3235 -37 372 297 125 0 chr13 27465221 27465349 -92279549 - MIR SINE MIR -114 148 5 219 280 42 93 chr13 27466968 27467086 -92277812 + MIR SINE MIR 16 127 -81 207 311 75 38 chr13 27467072 27467178 -92277720 - L2 LINE L2 -27 3245 3136 * 4523 140 28 17 chr13 27467369 27468121 -92276777 + L1MB3 LINE L1 5423 6182 -1 524 314 77 23 chr13 27468537 27468925 -92275973 - LTR33 LTR ERVL -27 494 86 699 170 65 26 chr13 27468936 27469089 -92275809 - MER5A DNA MER1_type -24 165 7 322 272 49 0 chr13 27469089 27469170 -92275728 - LTR33 LTR ERVL -420 101 17 252 0 0 0 chr13 27469173 27469201 -92275697 + (TTTAA)n Simple_repeat Simple_repeat 4 31 0 204 154 103 0 chr13 27469350 27469389 -92275509 + L3 LINE CR1 1534 1576 -1 209 143 24 24 chr13 27470433 27470475 -92274423 - L2 LINE L2 -1 3271 3230 244 306 185 9 chr13 27470573 27470681 -92274217 + L2 LINE L2 3143 3269 -3 1332 184 94 3 chr13 27471444 27471732 -92273166 - MER63 DNA MER1_type 0 1061 748 268 173 0 19 chr13 27471730 27471782 -92273116 - MER63 DNA MER1_type -159 51 1 * 816 134 47 35 chr13 27472020 27472166 -92272732 - L1MB8 LINE L1 -4 6174 6024 2266 96 3 0 chr13 27472166 27472469 -92272429 + AluSx SINE Alu 1 304 -8 816 134 47 35 chr13 27472469 27472494 -92272404 - L1MB8 LINE L1 -154 6024 6001 4257 50 0 2 chr13 27472494 27473014 -92271884 + L1PA4 LINE L1 5637 6155 0 4046 165 29 30 chr13 27473009 27474176 -92270722 - L1MB7 LINE L1 -145 6039 4872 * 622 265 61 5 chr13 27474373 27474569 -92270329 - MLT1J2 LTR MaLR 0 450 244 973 255 56 19 chr13 27474605 27474872 -92270026 - MLT1J2 LTR MaLR -173 277 1 288 146 164 0 chr13 27476455 27476510 -92268388 - MIR SINE MIR -116 146 83 376 260 48 42 chr13 27477316 27477729 -92267169 - MLT1H LTR MaLR -32 517 20 2171 192 65 9 chr13 27479240 27479711 -92265187 + MLT1F LTR MaLR 1 541 -1 23 33 0 0 chr13 27479851 27479881 -92265017 + AT_rich Low_complexity Low_complexity 1 30 0 269 312 196 0 chr13 27480213 27480351 -92264547 + MIR SINE MIR 49 213 -49 1651 179 7 3 chr13 27480659 27480966 -92263932 + AluJo SINE Alu 1 308 -4 660 223 73 10 chr13 27482113 27482319 -92262579 - L1MC5 LINE L1 -64 7897 7679 972 160 83 73 chr13 27482359 27482433 -92262465 - L1MC5 LINE L1 -370 7591 7519 2167 109 3 0 chr13 27482433 27482745 -92262153 + AluSp SINE Alu 1 313 0 972 160 83 73 chr13 27482745 27482983 -92261915 - L1MC5 LINE L1 -442 7519 7276 4327 168 31 46 chr13 27483035 27484209 -92260689 - L1MB3 LINE L1 -23 6160 5015 1305 228 37 67 chr13 27484199 27484691 -92260207 - L1MC5 LINE L1 -733 7228 6752 * 2104 98 7 0 chr13 27484765 27485050 -92259848 + AluSq SINE Alu 1 287 -26 1053 308 80 13 chr13 27485209 27485661 -92259237 - L2 LINE L2 -993 2321 1840 1352 139 0 39 chr13 27485924 27486154 -92258744 - AluSg/x SINE Alu -10 300 80 1124 129 0 38 chr13 27486154 27486363 -92258535 - L1MB2 LINE L1 -47 6124 5924 1616 157 3 63 chr13 27486391 27486709 -92258189 + AluJo SINE Alu 1 299 -13 384 290 0 0 chr13 27487554 27487647 -92257251 + MIR SINE MIR 33 125 -83 412 288 159 36 chr13 27487781 27488247 -92256651 + L2 LINE L2 2737 3278 -35 1143 122 22 0 chr13 27488252 27488270 -92256628 + AluSc SINE Alu 113 129 -180 2261 79 20 0 chr13 27488270 27488575 -92256323 + AluY SINE Alu 1 311 0 1143 122 22 0 chr13 27488575 27488737 -92256161 + AluSc SINE Alu 129 297 -12 2098 98 3 3 chr13 27488841 27489136 -92255762 + AluSp SINE Alu 7 301 -12 371 279 90 71 chr13 27489406 27489729 -92255169 - L1ME LINE L1 -529 5592 5264 311 235 92 0 chr13 27489734 27489832 -92255066 - L1ME LINE L1 -852 5294 5188 1746 149 0 43 chr13 27490226 27490654 -92254244 + AluJo SINE Alu 1 415 0 1160 159 5 10 chr13 27491669 27491876 -92253022 - AluJo SINE Alu -22 290 85 219 291 38 13 chr13 27492376 27492455 -92252443 - L2 LINE L2 -1 3312 3232 268 264 132 37 chr13 27493247 27493307 -92251591 - MIR SINE MIR 0 262 209 2021 109 0 0 chr13 27493307 27493637 -92251261 - AluY SINE Alu 0 330 1 268 264 132 37 chr13 27493637 27493819 -92251079 - MIR SINE MIR -53 209 3 354 188 0 0 chr13 27495780 27495849 -92249049 - L1MA9 LINE L1 -5 6307 6239 449 288 46 7 chr13 27495855 27496008 -92248890 - L1MDa LINE L1 -3938 2602 2444 755 233 56 11 chr13 27496072 27496252 -92248646 - MER5A DNA MER1_type -1 188 1 5607 116 13 14 chr13 27496277 27497116 -92247782 + L1PA15 LINE L1 5328 6165 0 2088 119 0 0 chr13 27497131 27497424 -92247474 + AluSx SINE Alu 5 297 -15 344 313 8 45 chr13 27498077 27498211 -92246687 - L2 LINE L2 -217 3055 2927 210 143 0 0 chr13 27498247 27498282 -92246616 + (A)n Simple_repeat Simple_repeat 1 35 0 1257 251 99 97 chr13 27498356 27498762 -92246136 + MER45C DNA AcHobo 1 410 -543 1459 182 124 30 chr13 27498762 27499124 -92245774 - MSTD LTR MaLR 0 396 1 1257 251 99 97 chr13 27499124 27499365 -92245533 + MER45C DNA AcHobo 410 649 -304 493 253 132 66 chr13 27499523 27499903 -92244995 + L2 LINE L2 1305 1709 -1605 254 345 42 21 chr13 27499966 27500108 -92244790 - L2 LINE L2 0 3313 3169 400 282 48 8 chr13 27500578 27500702 -92244196 + L2 LINE L2 1824 1952 -1362 338 360 71 0 chr13 27500839 27501064 -92243834 + L2 LINE L2 2438 2678 -636 966 150 0 0 chr13 27501138 27501285 -92243613 - AluSg/x SINE Alu -19 293 147 245 273 62 135 chr13 27501352 27501656 -92243242 + L2 LINE L2 2809 3090 -182 2108 123 3 0 chr13 27501997 27502306 -92242592 - AluSp SINE Alu -3 310 1 21 0 0 0 chr13 27503459 27503480 -92241418 + AT_rich Low_complexity Low_complexity 1 21 0 823 184 92 0 chr13 27503960 27504123 -92240775 + MER45A DNA AcHobo 1 178 0 1701 179 7 0 chr13 27505565 27505861 -92239037 - AluJb SINE Alu -11 301 4 1597 166 28 7 chr13 27506388 27506677 -92238221 + AluJo SINE Alu 3 297 -15 411 21 0 0 chr13 27506945 27506993 -92237905 + (TG)n Simple_repeat Simple_repeat 1 48 0 1794 153 37 3 chr13 27507074 27507374 -92237524 + AluSx SINE Alu 1 310 -2 1697 127 69 0 chr13 27507496 27507771 -92237127 - AluSx SINE Alu -16 296 3 207 318 45 0 chr13 27508366 27508432 -92236466 + MIR SINE MIR 76 144 -118 1657 109 0 0 chr13 27508646 27508875 -92236023 + AluSg/x SINE Alu 66 294 -16 578 290 115 71 chr13 27509529 27509939 -92234959 - MLT1K LTR MaLR -158 430 3 421 327 106 56 chr13 27510313 27510757 -92234141 + L2 LINE L2 2807 3272 0 1611 191 0 28 chr13 27512142 27512462 -92232436 + AluJo SINE Alu 1 311 -1 250 380 25 8 chr13 27512604 27512725 -92232173 - MIR SINE MIR -66 142 20 360 319 120 62 chr13 27514019 27514753 -92230145 + L2 LINE L2 2323 3115 -157 276 264 111 0 chr13 27515391 27515463 -92229435 + L2 LINE L2 3234 3313 0 180 238 214 24 chr13 27515479 27515563 -92229335 - MIR SINE MIR -162 100 1 * 866 263 35 26 chr13 27515563 27515728 -92229170 + MIR SINE MIR 84 250 -12 2152 125 36 31 chr13 27516300 27516659 -92228239 - THE1B LTR MaLR -2 362 2 361 156 0 26 chr13 27516693 27516770 -92228128 - L1MA7 LINE L1 -3 6288 6214 727 193 34 2 chr13 27517790 27517976 -92226922 + L1MB3 LINE L1 5258 5458 -698 * 1639 208 15 43 chr13 27517970 27518369 -92226529 + L1MB3 LINE L1 5753 6140 -43 241 119 24 24 chr13 27518371 27518413 -92226485 + Alu SINE Alu 2 43 -257 481 193 0 107 chr13 27519907 27520047 -92224851 - MER5B DNA MER1_type -53 125 1 401 225 18 9 chr13 27520872 27520983 -92223915 + MER69 DNA AcHobo 1 112 -2414 526 104 0 0 chr13 27521866 27521943 -92222955 + MER31B LTR ERV1 3 79 -387 2310 206 22 64 chr13 27521944 27522022 -92222876 + MER67B LTR ERV1 1 81 -580 2429 114 22 8 chr13 27522022 27522390 -92222508 - THE1C LTR MaLR 0 375 3 2310 206 22 64 chr13 27522390 27522997 -92221901 + MER67B LTR ERV1 81 657 -4 775 280 82 20 chr13 27523006 27523310 -92221588 - L2 LINE L2 -7 3306 2984 188 169 0 51 chr13 27524555 27524614 -92220284 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 185 194 28 0 chr13 27524745 27524781 -92220117 + L3b LINE CR1 1522 1558 -25 6858 111 25 16 chr13 27525904 27526966 -92217932 - MER11C LTR ERVK 0 1071 1 1700 148 27 6 chr13 27526969 27527299 -92217599 + MER96B DNA MER1_type? 1 337 -80 1358 273 5 11 chr13 27527317 27527560 -92217338 + L1MB7 LINE L1 22 264 -6278 2054 136 0 20 chr13 27527560 27527862 -92217036 + AluSx SINE Alu 1 296 -16 1358 273 5 11 chr13 27527862 27527999 -92216899 + L1MB7 LINE L1 264 400 -6142 3154 244 80 50 chr13 27528011 27529662 -92215236 + L1MB7 LINE L1 451 2096 -4550 7885 227 46 45 chr13 27529668 27530288 -92214610 + L1MB7 LINE L1 2451 3069 -3613 2104 128 0 22 chr13 27530288 27530601 -92214297 - AluSx SINE Alu -5 307 2 7885 227 46 45 chr13 27530601 27534224 -92210674 + L1MB7 LINE L1 3069 6682 0 953 184 165 4 chr13 27534591 27534863 -92210035 - MER33 DNA MER1_type -5 319 4 345 216 56 56 chr13 27535467 27535592 -92209306 + MIR SINE MIR 84 208 -54 206 255 191 32 chr13 27535694 27535788 -92209110 + MER5A DNA MER1_type 39 147 -42 301 176 0 15 chr13 27537562 27537630 -92207268 - MER116 DNA Mariner -13 67 1 465 200 33 0 chr13 27538929 27539019 -92205879 - MER91B DNA MER1_type -1 189 97 261 157 20 0 chr13 27539041 27539092 -92205806 - MER91B DNA MER1_type -60 130 79 207 289 13 0 chr13 27539901 27539977 -92204921 + (TGG)n Simple_repeat Simple_repeat 2 78 0 2380 84 0 3 chr13 27540213 27540521 -92204377 - AluSc SINE Alu -2 307 1 228 135 0 0 chr13 27542938 27542975 -92201923 + (TG)n Simple_repeat Simple_repeat 2 38 0 225 111 0 44 chr13 27543124 27543169 -92201729 + (TG)n Simple_repeat Simple_repeat 2 44 0 1676 147 7 18 chr13 27543191 27543476 -92201422 - AluSx SINE Alu -30 282 1 25 0 0 0 chr13 27543485 27543510 -92201388 + AT_rich Low_complexity Low_complexity 1 25 0 1419 206 45 24 chr13 27543522 27543809 -92201089 - AluJo SINE Alu -19 293 1 486 291 8 31 chr13 27543849 27543976 -92200922 + L2 LINE L2 3189 3312 -1 385 235 197 33 chr13 27544313 27544496 -92200402 + MIR SINE MIR 29 241 -21 198 0 0 0 chr13 27544615 27544637 -92200261 + (TA)n Simple_repeat Simple_repeat 2 23 0 226 314 105 24 chr13 27545450 27545574 -92199324 + L2 LINE L2 3178 3311 -2 255 295 95 53 chr13 27546678 27546773 -92198125 - L2 LINE L2 -17 3296 3198 924 186 26 26 chr13 27547345 27547538 -92197360 + MER20 DNA MER1_type 25 217 -2 270 277 0 59 chr13 27547628 27547729 -92197169 + L2 LINE L2 3219 3313 0 313 303 104 19 chr13 27548240 27548451 -92196447 + L2 LINE L2 2828 3056 -216 299 390 41 0 chr13 27550026 27550149 -92194749 - L2 LINE L2 -8 3264 3137 271 259 30 82 chr13 27550198 27550333 -92194565 - MER69A DNA AcHobo -22 155 28 794 233 270 9 chr13 27550448 27550974 -92193924 + L2 LINE L2 2641 3301 -12 1780 142 67 0 chr13 27551152 27551419 -92193479 + AluSx SINE Alu 1 285 -27 553 109 9 9 chr13 27551470 27551580 -92193318 + (CATA)n Simple_repeat Simple_repeat 2 111 0 889 285 125 25 chr13 27552024 27552537 -92192361 + Charlie7 DNA MER1_type 120 683 -1929 436 284 209 0 chr13 27552638 27552786 -92192112 + MER5A DNA MER1_type 10 188 -1 333 349 54 7 chr13 27552859 27553008 -92191890 + MIR SINE MIR 30 185 -77 448 240 82 20 chr13 27553128 27553324 -92191574 - Charlie2 DNA MER1_type 0 2862 2655 539 260 136 18 chr13 27553354 27553685 -92191213 + LTR33A LTR ERVL 152 521 -2 5690 65 5 13 chr13 27553807 27554574 -92190324 - L1PA10 LINE L1 -1 6167 5407 548 244 161 0 chr13 27554579 27554759 -92190139 - Charlie2 DNA MER1_type -2496 286 78 205 388 9 26 chr13 27556410 27556526 -92188372 - L2 LINE L2 -1 3271 3158 210 301 82 0 chr13 27557670 27557743 -92187155 - MIR SINE MIR -79 183 105 206 273 100 109 chr13 27559898 27560118 -92184780 + MIR SINE MIR 29 246 -16 237 315 0 0 chr13 27560193 27560266 -92184632 + L2 LINE L2 3230 3302 -11 1967 122 3 14 chr13 27560879 27561166 -92183732 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr13 27561166 27561186 -92183712 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 286 286 160 0 chr13 27561189 27561395 -92183503 + L1ME4a LINE L1 5684 5922 -199 42 20 0 0 chr13 27562209 27562258 -92182640 + AT_rich Low_complexity Low_complexity 1 49 0 1709 203 7 0 chr13 27562259 27562545 -92182353 - AluJo SINE Alu -24 288 1 291 179 0 0 chr13 27563601 27563668 -92181230 + (TG)n Simple_repeat Simple_repeat 2 68 0 286 292 15 54 chr13 27563730 27563860 -92181038 - MER5A DNA MER1_type -64 125 1 27 0 0 0 chr13 27565402 27565429 -92179469 + AT_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chr13 27565873 27565922 -92178976 + AT_rich Low_complexity Low_complexity 1 49 0 2177 124 3 3 chr13 27568042 27568348 -92176550 + AluSc SINE Alu 1 306 -3 1013 126 20 40 chr13 27568534 27568733 -92176165 - L1MA5A LINE L1 -5 6292 6098 185 310 69 0 chr13 27569528 27569586 -92175312 - L2 LINE L2 -36 3236 3175 35 0 0 0 chr13 27569715 27569750 -92175148 + AT_rich Low_complexity Low_complexity 1 35 0 1372 289 121 24 chr13 27570078 27570985 -92173913 - L2 LINE L2 0 3313 2320 250 202 222 40 chr13 27571240 27571339 -92173559 - MLT1K LTR MaLR -344 244 128 316 293 0 0 chr13 27571434 27571509 -92173389 + L2 LINE L2 3235 3309 -4 2161 79 9 88 chr13 27571624 27571952 -92172946 + AluY SINE Alu 1 302 -9 27 0 0 0 chr13 27571995 27572022 -92172876 + AT_rich Low_complexity Low_complexity 1 27 0 334 367 0 0 chr13 27572846 27573015 -92171883 + C-rich Low_complexity Low_complexity 1 169 0 8105 156 31 13 chr13 27573115 27574594 -92170304 - L1P LINE L1 -2519 3627 2122 4052 131 4 5 chr13 27574595 27575435 -92169463 - L1MA3 LINE L1 -474 5831 4992 749 173 12 87 chr13 27576154 27576327 -92168571 + MLT1B LTR MaLR 1 160 -214 223 239 0 0 chr13 27576328 27576374 -92168524 + G-rich Low_complexity Low_complexity 3 48 0 835 191 16 57 chr13 27576455 27576649 -92168249 + MLT1B LTR MaLR 205 390 0 1984 95 4 4 chr13 27577425 27577688 -92167210 - AluSc SINE Alu -46 263 1 10326 130 1 30 chr13 27577689 27579090 -92165808 - L1P4 LINE L1 -491 5683 4363 350 44 0 0 chr13 27579090 27579135 -92165763 - L1PA3 LINE L1 -3 6152 6108 10326 130 1 30 chr13 27579135 27579777 -92165121 - L1P4 LINE L1 -1811 4363 3704 1576 146 59 31 chr13 27579877 27580164 -92164734 - MSTB1 LTR MaLR -136 296 2 376 166 74 23 chr13 27580169 27580277 -92164621 + L1MEd LINE L1 1287 1486 -4886 673 287 11 0 chr13 27580312 27580493 -92164405 + L1MEd LINE L1 1679 1861 -4702 336 299 46 69 chr13 27580550 27580724 -92164174 + L2 LINE L2 2897 3066 -247 2113 83 58 0 chr13 27581351 27581628 -92163270 - AluSg1 SINE Alu -16 293 1 1522 254 129 17 chr13 27581672 27582152 -92162746 - MLT1F LTR MaLR -8 534 1 334 209 0 45 chr13 27582376 27582443 -92162455 + L2 LINE L2 3209 3272 0 336 197 0 45 chr13 27582502 27582568 -92162330 + L2 LINE L2 3210 3272 0 342 194 48 0 chr13 27582629 27582691 -92162207 + L2 LINE L2 3208 3272 0 187 253 60 60 chr13 27584392 27584475 -92160423 + L3 LINE CR1 1494 1576 -1 964 251 27 5 chr13 27585109 27585332 -92159566 + MIR SINE MIR 28 255 -7 494 239 122 20 chr13 27585565 27585762 -92159136 - L3 LINE CR1 -149 1428 1212 2075 101 66 0 chr13 27586330 27586618 -92158280 + AluSg SINE Alu 1 307 -3 298 354 24 0 chr13 27587030 27587157 -92157741 - L2 LINE L2 -223 3049 2920 6055 99 31 0 chr13 27588373 27589307 -92155591 - L1PA10 LINE L1 -32 6136 5179 261 224 164 45 chr13 27590597 27590731 -92154167 - L1ME4a LINE L1 -17 6104 5955 4669 133 35 19 chr13 27591002 27591802 -92153096 - L1PB4 LINE L1 0 6156 5344 4410 177 67 49 chr13 27591798 27592082 -92152816 + L1MD2 LINE L1 4674 4951 -1408 * 1889 135 43 0 chr13 27592082 27592363 -92152535 - AluSx SINE Alu -19 293 1 4410 177 67 49 chr13 27592363 27592475 -92152423 + L1MD2 LINE L1 4951 5059 -1300 1679 187 3 3 chr13 27592475 27592759 -92152139 + AluJo SINE Alu 6 289 -23 4410 177 67 49 chr13 27592759 27593789 -92151109 + L1MD2 LINE L1 5059 6130 -229 4242 171 39 54 chr13 27593781 27594835 -92150063 + L1MB3 LINE L1 5379 6180 -3 * 304 348 22 0 chr13 27595463 27595552 -92149346 - MIR SINE MIR -123 139 49 1996 243 100 18 chr13 27595759 27596641 -92148257 - L2 LINE L2 -8 3305 2327 2472 73 0 7 chr13 27598434 27598737 -92146161 - AluSp SINE Alu -12 301 1 805 266 15 0 chr13 27599966 27600169 -92144729 - MER3 DNA MER1_type 0 209 4 9473 36 12 5 chr13 27600448 27602292 -92142606 + L1PA4 LINE L1 4305 6155 0 582 267 0 7 chr13 27602349 27602484 -92142414 - MER45A DNA AcHobo 0 178 45 5905 215 67 61 chr13 27603322 27603442 -92141456 - L1MD2 LINE L1 -9 6744 6626 2182 158 38 28 chr13 27603442 27603641 -92141257 + MER57A LTR ERV1 1 197 -206 2407 77 0 3 chr13 27603641 27603941 -92140957 - AluY SINE Alu -11 300 2 2182 158 38 28 chr13 27603941 27604101 -92140797 + MER57A LTR ERV1 197 367 -36 2021 147 0 25 chr13 27604101 27604420 -92140478 - AluSx SINE Alu -1 311 1 2182 158 38 28 chr13 27604420 27604458 -92140440 + MER57A LTR ERV1 367 403 0 5905 215 67 61 chr13 27604458 27604529 -92140369 - L1MD2 LINE L1 -127 6626 6557 222 37 0 0 chr13 27604529 27604556 -92140342 + (TG)n Simple_repeat Simple_repeat 2 28 0 5905 215 67 61 chr13 27604556 27604967 -92139931 - L1MD2 LINE L1 -196 6557 6150 348 143 79 0 chr13 27604967 27605030 -92139868 - MLT1C LTR MaLR 0 467 400 239 170 0 57 chr13 27605027 27605080 -92139818 - MLT1B LTR MaLR -340 50 1 * 5905 215 67 61 chr13 27605080 27607318 -92137580 - L1MD2 LINE L1 -653 6100 3779 807 176 6 6 chr13 27607320 27607485 -92137413 - L1MD2 LINE L1 -4517 2023 1859 24113 33 4 0 chr13 27607493 27611023 -92133875 - L1PA4 LINE L1 0 6155 2616 8867 41 0 0 chr13 27611023 27612094 -92132804 + L1PA4 LINE L1 1526 2596 -3550 1388 161 80 0 chr13 27612087 27612373 -92132525 - L1MD2 LINE L1 -4662 1878 1570 * 5349 42 0 0 chr13 27612375 27612978 -92131920 - L1PA4 LINE L1 -2 6153 5551 6375 28 1 0 chr13 27612978 27613724 -92131174 - L1PA4 LINE L1 -1048 5098 4352 3065 75 10 0 chr13 27613713 27614113 -92130785 + L1PA4 LINE L1 3941 4344 -1802 * 230 237 0 0 chr13 27614115 27614127 -92130771 + T-rich Low_complexity Low_complexity 1 12 -47 2906 126 32 2 chr13 27614127 27614570 -92130328 - L1MA2 LINE L1 0 6304 5849 230 237 0 0 chr13 27614570 27614616 -92130282 + T-rich Low_complexity Low_complexity 11 59 0 2222 99 42 19 chr13 27614623 27614936 -92129962 - L1PA10 LINE L1 -16 6152 5833 369 0 0 0 chr13 27615050 27615091 -92129807 + (CA)n Simple_repeat Simple_repeat 2 42 0 2235 158 45 5 chr13 27615126 27615505 -92129393 - MLT2C2 LTR ERVL -70 394 1 257 289 50 25 chr13 27615611 27615732 -92129166 - MIR SINE MIR -74 188 65 2093 114 3 0 chr13 27616443 27616732 -92128166 - AluSp SINE Alu -5 308 19 1421 218 108 90 chr13 27616736 27617426 -92127472 - L1ME3 LINE L1 -1 6161 5456 1727 160 28 7 chr13 27617687 27617974 -92126924 - AluJo SINE Alu -19 293 1 258 250 0 0 chr13 27619031 27619083 -92125815 + LTR30 LTR ERV1 1 52 -670 1281 111 0 137 chr13 27619083 27619353 -92125545 + LTR12 LTR ERV1 53 285 -429 327 191 0 0 chr13 27619353 27619416 -92125482 + LTR30 LTR ERV1 552 614 -108 616 175 100 0 chr13 27619416 27619536 -92125362 + LTR12 LTR ERV1 349 480 -234 2312 89 7 0 chr13 27620030 27620321 -92124577 + AluSc SINE Alu 1 293 -16 22 0 0 0 chr13 27620492 27620514 -92124384 + AT_rich Low_complexity Low_complexity 1 22 0 2587 101 6 8 chr13 27621693 27622058 -92122840 - THE1B LTR MaLR 0 364 1 1591 189 29 3 chr13 27622087 27622430 -92122468 + L1MB5 LINE L1 5685 6036 -138 604 297 54 83 chr13 27622434 27622842 -92122056 + L1ME3A LINE L1 792 1187 -4932 391 262 0 0 chr13 27622842 27622949 -92121949 + L1ME3A LINE L1 2271 2377 -3752 226 271 0 31 chr13 27622975 27623071 -92121827 + L1ME3A LINE L1 2475 2567 -3562 548 157 37 0 chr13 27623071 27623179 -92121719 - Charlie1 DNA MER1_type 0 2761 2650 22 80 0 0 chr13 27623372 27623422 -92121476 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr13 27623443 27623471 -92121427 + AT_rich Low_complexity Low_complexity 1 28 0 1773 167 88 24 chr13 27623471 27623927 -92120971 - Charlie1 DNA MER1_type -265 2496 2012 2114 238 100 27 chr13 27623928 27624889 -92120009 + L1ME3A LINE L1 5122 6149 -4 444 316 48 39 chr13 27624962 27625193 -92119705 + MIR SINE MIR 8 240 -22 325 276 11 11 chr13 27625199 27625286 -92119612 - L2 LINE L2 -2 3270 3184 597 235 128 11 chr13 27625305 27625492 -92119406 - MER3 DNA MER1_type 0 209 1 955 195 42 0 chr13 27626020 27626256 -92118642 - L1MA4 LINE L1 -2 6298 6053 22 35 0 0 chr13 27626300 27626329 -92118569 + AT_rich Low_complexity Low_complexity 1 29 0 256 263 51 17 chr13 27626741 27626774 -92118124 - L1MA4A LINE L1 0 6303 6271 5079 123 27 25 chr13 27626774 27627833 -92117065 - L1PB4 LINE L1 -19 6137 5068 306 50 0 0 chr13 27628195 27628235 -92116663 + (TG)n Simple_repeat Simple_repeat 1 40 0 744 174 8 0 chr13 27628646 27628778 -92116120 - FLAM_C SINE Alu 0 133 1 240 333 48 0 chr13 27628873 27628978 -92115920 - MIR SINE MIR -50 212 103 546 380 5 9 chr13 27630288 27630509 -92114389 + L3 LINE CR1 1333 1552 -25 4617 165 44 11 chr13 27631386 27632501 -92112397 - L1MB2 LINE L1 -3 6168 5009 2392 148 12 7 chr13 27632501 27632907 -92111991 - Tigger1 DNA MER2_type -2010 408 1 938 188 110 0 chr13 27632907 27633179 -92111719 + L1 LINE L1 4163 4464 -1682 816 136 14 0 chr13 27633176 27633323 -92111575 - L1MB2 LINE L1 -1541 4605 4457 * 357 223 11 0 chr13 27633317 27633411 -92111487 - L1MB2 LINE L1 -2094 4052 3958 * 2037 154 0 0 chr13 27633446 27633744 -92111154 + AluSx SINE Alu 1 298 -14 338 328 25 37 chr13 27634155 27634396 -92110502 - L1MC4a LINE L1 -1759 6049 5812 379 285 163 19 chr13 27634618 27635029 -92109869 - L1MC4a LINE L1 -1896 5912 5443 329 280 99 71 chr13 27635030 27635156 -92109742 - L1MC4a LINE L1 -743 5403 5282 2123 118 0 0 chr13 27635156 27635443 -92109455 + AluSq SINE Alu 1 287 -26 329 280 99 71 chr13 27635443 27635699 -92109199 - L1MC4a LINE L1 -864 5282 5008 239 293 0 0 chr13 27635736 27635818 -92109080 - L1MC4a LINE L1 -1159 4987 4906 286 204 151 11 chr13 27635865 27635958 -92108940 + L1MB7 LINE L1 4729 4834 -1312 223 287 225 29 chr13 27636877 27637086 -92107812 - MIR SINE MIR -12 250 1 1850 132 3 13 chr13 27637838 27638142 -92106756 - L1PB1 LINE L1 0 6151 5851 1898 179 9 9 chr13 27639321 27639662 -92105236 - MER2 DNA MER2_type -3 341 1 33 43 0 0 chr13 27640817 27640864 -92104034 + AT_rich Low_complexity Low_complexity 1 47 0 1678 201 76 44 chr13 27640925 27641380 -92103518 + L1MDa LINE L1 143 582 -5958 2112 170 59 7 chr13 27641380 27641785 -92103113 - MSTB LTR MaLR 0 426 1 1678 201 76 44 chr13 27641785 27642054 -92102844 + L1MDa LINE L1 582 1210 -5330 * 3931 155 60 8 chr13 27642035 27642803 -92102095 + L1MB7 LINE L1 5361 6168 -16 2078 167 78 37 chr13 27642810 27643399 -92101499 + L1MDa LINE L1 1220 1835 -4705 758 287 127 2 chr13 27643549 27643943 -92100955 - L1ME4a LINE L1 -76 6045 5603 221 214 29 0 chr13 27643956 27644026 -92100872 + (TA)n Simple_repeat Simple_repeat 1 72 0 26 0 0 0 chr13 27644701 27644727 -92100171 + GC_rich Low_complexity Low_complexity 1 26 0 1033 176 44 24 chr13 27644943 27645193 -92099705 + L1MDa LINE L1 1573 1827 -4713 653 287 128 13 chr13 27645352 27645749 -92099149 - L1ME4a LINE L1 -76 6045 5603 223 237 25 17 chr13 27645762 27645880 -92099018 + (TA)n Simple_repeat Simple_repeat 2 120 0 194 247 0 27 chr13 27646663 27646736 -92098162 + L2 LINE L2 1615 1685 -1629 2509 77 0 0 chr13 27646807 27647118 -92097780 + AluY SINE Alu 1 311 0 261 278 0 14 chr13 27647248 27647320 -92097578 + (TG)n Simple_repeat Simple_repeat 1 71 0 1263 294 151 17 chr13 27647326 27648023 -92096875 + L2 LINE L2 1688 2477 -837 203 232 14 43 chr13 27648233 27648302 -92096596 + L2 LINE L2 3224 3290 -23 199 303 34 67 chr13 27648984 27649103 -92095795 - MIR SINE MIR -117 145 31 245 210 16 0 chr13 27649309 27649371 -92095527 + (TA)n Simple_repeat Simple_repeat 2 64 0 2077 152 11 6 chr13 27649375 27649737 -92095161 - MLT2D LTR ERVL -50 364 1 1810 166 3 13 chr13 27650177 27650490 -92094408 + AluJo SINE Alu 1 310 -2 243 225 28 14 chr13 27651748 27651819 -92093079 - L1ME4a LINE L1 -79 6042 5971 770 210 68 18 chr13 27651989 27652208 -92092690 - Zaphod DNA AcHobo -19 4012 3783 1549 211 87 6 chr13 27652240 27652781 -92092117 - Zaphod DNA AcHobo -2699 1332 748 1249 211 0 0 chr13 27652786 27653004 -92091894 - AluJo SINE Alu -19 293 76 1048 141 11 16 chr13 27653005 27653196 -92091702 - L1MA5A LINE L1 -3 6294 6105 18055 189 47 22 chr13 27653314 27659058 -92085840 - L1 LINE L1 -1413 6152 570 2131 116 142 16 chr13 27659058 27659438 -92085460 + MSTA LTR MaLR 1 428 0 18055 189 47 22 chr13 27659438 27660003 -92084895 - L1 LINE L1 -6995 570 21 2345 233 89 10 chr13 27660003 27660883 -92084015 - L1MDb LINE L1 -4954 1452 458 1326 273 123 21 chr13 27660876 27661436 -92083462 - L1MDb LINE L1 -5776 633 17 * 675 299 43 4 chr13 27662703 27662934 -92081964 + MIR SINE MIR 15 254 -8 27 29 0 0 chr13 27663868 27663902 -92080996 + AT_rich Low_complexity Low_complexity 1 34 0 1332 178 12 17 chr13 27664423 27664664 -92080234 + AluJo SINE Alu 49 288 -24 4085 168 33 48 chr13 27664775 27666552 -92078346 + L1MA3 LINE L1 4558 6298 -7 211 324 89 49 chr13 27666568 27666793 -92078105 - L2 LINE L2 -210 3062 2829 253 336 85 47 chr13 27666799 27667117 -92077781 - L2 LINE L2 -1 3271 2942 197 296 136 12 chr13 27668056 27668137 -92076761 + MIR SINE MIR 16 106 -102 391 188 0 0 chr13 27668270 27668339 -92076559 - MER2 DNA MER2_type -10 335 267 1612 170 88 25 chr13 27668390 27668743 -92076155 + THE1C LTR MaLR 1 375 0 2037 29 4 0 chr13 27668776 27669021 -92075877 - L1PA4 LINE L1 -6 6149 5904 371 176 0 0 chr13 27669022 27669096 -92075802 + MER2 DNA MER2_type 108 181 -164 192 270 40 40 chr13 27669315 27669389 -92075509 + MIR SINE MIR 79 152 -110 1035 144 12 0 chr13 27669401 27669568 -92075330 - MER2 DNA MER2_type -175 170 2 230 189 156 22 chr13 27669758 27669848 -92075050 + MLT1H LTR MaLR 432 533 -16 198 259 148 28 chr13 27669870 27669978 -92074920 + MIR SINE MIR 113 233 -29 2068 182 49 9 chr13 27670179 27670210 -92074688 - MLT2C2 LTR ERVL 0 464 436 405 0 0 0 chr13 27670210 27670255 -92074643 + (CA)n Simple_repeat Simple_repeat 2 46 0 2068 182 49 9 chr13 27670255 27670669 -92074229 - MLT2C2 LTR ERVL -28 436 1 263 289 50 25 chr13 27670775 27670896 -92074002 - MIR SINE MIR -74 188 65 2303 104 3 0 chr13 27671607 27671914 -92072984 - AluSq SINE Alu -5 308 1 416 101 0 0 chr13 27671915 27671978 -92072920 - L1MA5A LINE L1 -171 6126 6064 * 544 184 184 28 chr13 27671976 27672193 -92072705 - Zaphod DNA AcHobo -3275 756 506 968 244 44 0 chr13 27672194 27672399 -92072499 + MER58A DNA MER1_type 2 215 -9 604 250 8 0 chr13 27672408 27672540 -92072358 - Zaphod DNA AcHobo -3518 513 381 526 302 93 24 chr13 27672572 27672820 -92072078 - Zaphod DNA AcHobo -3716 315 51 192 209 47 0 chr13 27673355 27673398 -92071500 + L3 LINE CR1 1375 1419 -158 256 400 24 0 chr13 27673593 27673718 -92071180 - MIR SINE MIR -128 134 7 418 218 73 32 chr13 27675162 27675286 -92069612 - MER112 DNA MER1_type -126 134 6 264 317 17 33 chr13 27675290 27675410 -92069488 - L1ME LINE L1 -513 5657 5540 227 252 65 9 chr13 27675830 27675937 -92068961 - Charlie8 DNA MER1_type -1926 491 379 486 249 42 114 chr13 27676013 27676250 -92068648 - Charlie8 DNA MER1_type -2196 221 2 260 324 0 0 chr13 27676413 27676481 -92068417 + L2 LINE L2 3205 3272 0 518 258 18 30 chr13 27677449 27677616 -92067282 - MIR SINE MIR -4 258 94 182 330 143 44 chr13 27677693 27677875 -92067023 - L2 LINE L2 -68 3204 3005 1208 173 0 0 chr13 27677876 27678067 -92066831 + AluJb SINE Alu 121 311 -1 282 301 7 44 chr13 27678093 27678229 -92066669 - L2 LINE L2 -300 2972 2842 21 0 0 0 chr13 27679557 27679578 -92065320 + AT_rich Low_complexity Low_complexity 1 21 0 332 249 164 73 chr13 27682100 27682429 -92062469 - L1MC4a LINE L1 -1636 6172 5814 406 223 230 14 chr13 27682439 27682578 -92062320 - L1MC4a LINE L1 -2057 5751 5583 608 211 8 8 chr13 27682684 27682807 -92062091 + MER94 DNA DNA 2 124 -10 636 125 19 10 chr13 27682936 27683040 -92061858 + L1MB3 LINE L1 6075 6179 -4 1397 238 11 26 chr13 27683061 27683410 -92061488 + L1ME1 LINE L1 5823 6166 0 4491 146 21 34 chr13 27684073 27684889 -92060009 + L1MB3 LINE L1 5370 6174 -9 1413 208 48 10 chr13 27685154 27685474 -92059424 + MER33 DNA MER1_type 1 323 -1 698 146 177 0 chr13 27685481 27685611 -92059287 + MER5A DNA MER1_type 34 186 -3 884 226 123 39 chr13 27686504 27686814 -92058084 - MER46C DNA MER2_type -1 337 2 218 265 29 59 chr13 27687174 27687276 -92057622 + MIR SINE MIR 164 262 0 21 0 0 0 chr13 27687395 27687416 -92057482 + AT_rich Low_complexity Low_complexity 1 21 0 2000 174 34 8 chr13 27687477 27687834 -92057064 + MLT2D LTR ERVL 1 366 -48 907 223 41 0 chr13 27688600 27688797 -92056101 - MER3 DNA MER1_type 0 209 5 329 296 79 17 chr13 27688859 27688997 -92055901 - MIR SINE MIR -62 146 8 208 294 49 10 chr13 27689188 27689290 -92055608 - L2 LINE L2 -1397 1917 1812 328 236 176 0 chr13 27689428 27689576 -92055322 - Charlie8 DNA MER1_type -2152 265 92 501 124 82 10 chr13 27689619 27689716 -92055182 + L1MB3 LINE L1 6080 6183 0 470 273 8 0 chr13 27689816 27689937 -92054961 + MER5B DNA MER1_type 51 172 -6 282 279 76 0 chr13 27691724 27691803 -92053095 - Charlie8 DNA MER1_type -2314 103 19 217 149 68 108 chr13 27691936 27692010 -92052888 - L2 LINE L2 -2 3311 3241 2418 86 186 121 chr13 27692191 27692868 -92052030 + LTR12 LTR ERV1 1 2313 -125 706 275 138 73 chr13 27693250 27693756 -92051142 - MLT1E2 LTR MaLR -8 618 80 514 171 34 17 chr13 27694140 27694257 -92050641 + MER4C LTR ERV1 1 119 -346 656 256 73 136 chr13 27694276 27694908 -92049990 + LTR34 LTR ERV1 104 695 -4 192 316 20 31 chr13 27694989 27695087 -92049811 + L2 LINE L2 2995 3091 -181 312 303 0 0 chr13 27696035 27696134 -92048764 - MLT1E2 LTR MaLR -8 618 520 * 609 240 2 40 chr13 27696119 27696342 -92048556 + AluJ SINE Alu 81 260 -52 923 229 19 64 chr13 27696441 27696623 -92048275 - MLT1E2 LTR MaLR -371 255 87 1804 163 14 88 chr13 27696623 27697041 -92047857 - MLT1B LTR MaLR -1 389 3 923 229 19 64 chr13 27697041 27697125 -92047773 - MLT1E2 LTR MaLR -539 87 1 1738 171 31 3 chr13 27697334 27697626 -92047272 - AluSx SINE Alu -12 300 1 497 203 82 88 chr13 27697768 27697950 -92046948 - MER3 DNA MER1_type -5 204 24 2049 126 6 25 chr13 27698898 27699215 -92045683 - AluSx SINE Alu -1 311 1 2274 141 21 26 chr13 27700752 27701129 -92043769 + THE1C LTR MaLR 1 375 0 1768 102 0 0 chr13 27701129 27701373 -92043525 + THE1C-int LTR MaLR 1 244 -1336 544 199 0 89 chr13 27702232 27702378 -92042520 - FLAM_A SINE Alu 0 133 1 28 29 0 0 chr13 27702613 27702648 -92042250 + AT_rich Low_complexity Low_complexity 1 35 0 2529 51 0 0 chr13 27703825 27704117 -92040781 + AluY SINE Alu 1 292 -19 420 299 0 28 chr13 27705085 27705229 -92039669 - MER20 DNA MER1_type -64 155 16 1832 163 56 31 chr13 27705488 27705843 -92039055 + THE1B LTR MaLR 1 364 0 1761 177 7 0 chr13 27706135 27706440 -92038458 + AluSx SINE Alu 1 307 -5 2067 125 6 6 chr13 27706489 27706800 -92038098 + AluY SINE Alu 1 311 0 35 0 0 0 chr13 27707147 27707182 -92037716 + AT_rich Low_complexity Low_complexity 1 35 0 386 96 32 48 chr13 27707183 27707308 -92037590 + (TTATA)n Simple_repeat Simple_repeat 2 124 0 261 169 42 0 chr13 27707310 27707381 -92037517 + (TA)n Simple_repeat Simple_repeat 2 75 0 302 341 11 0 chr13 27707481 27707569 -92037329 + L1MC4 LINE L1 6615 6703 -1339 * 324 250 33 0 chr13 27707511 27707603 -92037295 - L1MC4 LINE L1 -1337 6705 6611 1249 200 86 21 chr13 27708255 27708535 -92036363 - AluJo SINE Alu -14 298 1 526 201 7 43 chr13 27708571 27708692 -92036206 - Charlie5 DNA MER1_type -8 2616 2499 2299 192 28 16 chr13 27708692 27709119 -92035779 + Tigger2a DNA MER2_type 2 433 -1 526 201 7 43 chr13 27709119 27709136 -92035762 - Charlie5 DNA MER1_type -125 2499 2483 510 275 192 0 chr13 27709526 27709719 -92035179 - Charlie8 DNA MER1_type -2142 275 46 198 380 65 65 chr13 27710006 27710361 -92034537 + L2 LINE L2 2879 3233 -39 198 71 0 0 chr13 27710551 27710579 -92034319 + (TG)n Simple_repeat Simple_repeat 2 29 0 1019 277 4 11 chr13 27711113 27711373 -92033525 - MIR SINE MIR -2 260 3 229 298 279 0 chr13 27711691 27711795 -92033103 - MIR SINE MIR -41 221 89 735 322 83 51 chr13 27712088 27713093 -92031805 + L2 LINE L2 2233 3272 0 739 188 32 32 chr13 27713160 27713314 -92031584 + MER5A DNA MER1_type 1 154 -35 480 369 5 5 chr13 27713393 27713580 -92031318 + MIR3 SINE MIR 20 206 -2 2411 135 136 131 chr13 27713890 27714499 -92030399 + LTR18B LTR ERVL 3 614 0 969 228 0 0 chr13 27714588 27714768 -92030130 - HERVL18 LTR ERVL -4803 1244 1065 2100 228 32 0 chr13 27714782 27715190 -92029708 + HERVL18 LTR ERVL 68 488 -5559 390 169 14 0 chr13 27715459 27715530 -92029368 + MADE1 DNA Mariner 9 80 0 5001 116 9 8 chr13 27717924 27718693 -92026205 - L1PA16 LINE L1 -9 6157 5388 1901 76 61 11 chr13 27718693 27718955 -92025943 - L1PA11 LINE L1 0 6174 5900 2560 68 0 0 chr13 27718955 27719262 -92025636 - AluY SINE Alu -2 309 3 21 0 0 0 chr13 27719278 27719299 -92025599 + AT_rich Low_complexity Low_complexity 1 21 0 3709 152 47 29 chr13 27720320 27721006 -92023892 - L1MB3 LINE L1 0 6183 5486 1366 206 204 0 chr13 27721010 27721393 -92023505 - L1PA16 LINE L1 -924 5222 4762 275 138 12 62 chr13 27721383 27721463 -92023435 - L1M4c LINE L1 -4093 2291 2216 * 8670 161 17 28 chr13 27721571 27723592 -92021306 + L1P3 LINE L1 347 2358 -4103 895 284 74 53 chr13 27723704 27724209 -92020689 + L2 LINE L2 2750 3274 -39 646 290 21 16 chr13 27725866 27726052 -92018846 + MIR SINE MIR 10 196 -66 956 292 100 29 chr13 27726286 27726806 -92018092 - L1MC4a LINE L1 -1945 5863 5307 371 306 139 24 chr13 27726809 27727182 -92017716 - L1MC4a LINE L1 -846 5300 4885 707 158 113 15 chr13 27727204 27727337 -92017561 + FAM SINE Alu 20 165 -20 23 68 0 0 chr13 27727338 27727382 -92017516 + AT_rich Low_complexity Low_complexity 1 44 0 311 173 12 0 chr13 27727401 27727482 -92017416 + (TA)n Simple_repeat Simple_repeat 2 83 0 469 345 50 3 chr13 27727482 27727824 -92017074 - L1MC4a LINE L1 -1301 4845 4488 324 0 0 0 chr13 27728044 27728080 -92016818 + (TG)n Simple_repeat Simple_repeat 1 36 0 313 335 76 38 chr13 27728091 27728381 -92016517 - L1MC4a LINE L1 -2476 3670 3370 1595 214 0 4 chr13 27728387 27728668 -92016230 + AluJo SINE Alu 1 280 -32 1288 244 101 7 chr13 27728755 27729169 -92015729 + MLT1D LTR MaLR 51 503 -2 514 217 45 19 chr13 27729248 27729405 -92015493 - HAL1b LINE L1 -849 499 339 2555 135 31 26 chr13 27730150 27730683 -92014215 + HUERS-P1 LTR ERV1 3541 4277 -1986 * 5638 131 55 19 chr13 27730674 27732251 -92012647 + HUERS-P1 LTR ERV1 5307 7168 -648 26 0 0 0 chr13 27732418 27732444 -92012454 + AT_rich Low_complexity Low_complexity 1 26 0 260 313 120 88 chr13 27732675 27732721 -92012177 - L2 LINE L2 0 3272 3229 1580 191 94 31 chr13 27732721 27733072 -92011826 + MER93b LTR ERV1 1 373 0 260 313 120 88 chr13 27733072 27733217 -92011681 - L2 LINE L2 -43 3229 3075 551 89 13 0 chr13 27733737 27733816 -92011082 + MADE1 DNA Mariner 1 80 0 231 243 57 121 chr13 27733967 27734107 -92010791 - MIR SINE MIR -66 196 66 242 263 158 21 chr13 27734354 27734449 -92010449 + MIR SINE MIR 86 193 -69 220 294 22 66 chr13 27735031 27735167 -92009731 + MIR SINE MIR 91 220 -42 2333 112 0 0 chr13 27735261 27735566 -92009332 + AluSx SINE Alu 1 305 -7 2090 132 0 14 chr13 27737299 27737595 -92007303 + AluSx SINE Alu 1 292 -20 453 281 60 10 chr13 27737755 27737954 -92006944 - MLT1J2 LTR MaLR -205 245 37 3090 105 28 0 chr13 27737954 27738457 -92006441 + L1P LINE L1 4816 5332 -814 271 284 107 52 chr13 27738623 27738933 -92005965 - MER50 LTR ERV1 -398 336 10 457 213 53 73 chr13 27738941 27739091 -92005807 + MER89 LTR ERV1 413 559 0 2534 54 0 0 chr13 27739284 27739582 -92005316 - AluSg SINE Alu -12 298 1 5739 118 15 3 chr13 27739584 27741114 -92003784 - L1PA11 LINE L1 -267 5907 4360 3443 211 29 17 chr13 27741113 27742001 -92002897 - L1P LINE L1 -749 5397 4499 * 23964 140 15 23 chr13 27742101 27748440 -91996458 + L1PA8 LINE L1 139 6484 -3 1903 198 39 39 chr13 27749150 27749641 -91995257 - L1MD2 LINE L1 -41 7129 6639 1250 169 15 41 chr13 27749641 27749709 -91995189 - Tigger2a DNA MER2_type -2274 444 376 2444 84 0 0 chr13 27749709 27750007 -91994891 - AluY SINE Alu -13 298 1 1250 169 15 41 chr13 27750007 27750204 -91994694 - Tigger2a DNA MER2_type -2342 376 186 513 165 10 10 chr13 27750212 27750315 -91994583 - Tigger2a DNA MER2_type -331 103 1 2753 200 28 7 chr13 27750317 27751121 -91993777 - L1MD2 LINE L1 -532 6638 5816 253 301 19 0 chr13 27751433 27751536 -91993362 - L1ME LINE L1 -296 5825 5721 207 0 0 0 chr13 27752114 27752137 -91992761 + (A)n Simple_repeat Simple_repeat 1 23 0 315 0 0 0 chr13 27752388 27752423 -91992475 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr13 27755510 27755537 -91989361 + AT_rich Low_complexity Low_complexity 1 27 0 1087 184 53 5 chr13 27755552 27755758 -91989140 + MER20 DNA MER1_type 4 219 0 5345 239 72 9 chr13 27756741 27758657 -91986241 - L1MD2 LINE L1 -1726 5231 3195 6632 222 48 20 chr13 27758701 27760641 -91984257 - L1MD2 LINE L1 -4846 2009 11 327 293 8 24 chr13 27760892 27761015 -91983883 + L1MD2 LINE L1 6229 6349 -10 29 60 0 0 chr13 27761035 27761085 -91983813 + AT_rich Low_complexity Low_complexity 1 50 0 710 276 245 17 chr13 27761230 27761708 -91983190 + L2 LINE L2 1758 2344 -970 861 187 52 30 chr13 27761712 27761942 -91982956 - MLT1C LTR MaLR -227 240 6 270 319 21 14 chr13 27761959 27762103 -91982795 + L2 LINE L2 3150 3294 -19 182 218 0 18 chr13 27762644 27762699 -91982199 + (TG)n Simple_repeat Simple_repeat 1 54 0 538 223 121 0 chr13 27762718 27762875 -91982023 + MER96B DNA MER1_type? 1 176 -241 24 32 0 0 chr13 27763182 27763213 -91981685 + AT_rich Low_complexity Low_complexity 1 31 0 803 276 46 17 chr13 27763254 27763493 -91981405 + L2 LINE L2 2147 2392 -922 1645 156 125 3 chr13 27763800 27764121 -91980777 + MLT1A1 LTR MaLR 5 364 -1 27 0 0 0 chr13 27764711 27764738 -91980160 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 27766513 27766536 -91978362 + AT_rich Low_complexity Low_complexity 1 23 0 189 229 42 0 chr13 27767564 27767612 -91977286 + L2 LINE L2 3264 3313 0 249 236 18 0 chr13 27767686 27767741 -91977157 - MER45 DNA AcHobo -9 1572 1517 24 0 0 0 chr13 27767981 27768005 -91976893 + AT_rich Low_complexity Low_complexity 1 24 0 444 353 18 0 chr13 27768285 27768452 -91976446 - MIR3 SINE MIR -5 203 34 1870 254 36 14 chr13 27768507 27769000 -91975898 + MLT1J LTR MaLR 5 508 -3 249 33 0 0 chr13 27769421 27769451 -91975447 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr13 27771211 27771233 -91973665 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr13 27771674 27771704 -91973194 + (CA)n Simple_repeat Simple_repeat 1 30 0 1210 161 60 0 chr13 27772717 27772935 -91971963 - MER46A DNA MER2_type -5 231 1 23 0 0 0 chr13 27773146 27773169 -91971729 + AT_rich Low_complexity Low_complexity 1 23 0 2406 71 0 3 chr13 27773202 27773499 -91971399 - AluY SINE Alu -15 296 1 3443 211 29 17 chr13 27774181 27775069 -91969829 + L1P LINE L1 4499 5397 -749 * 5739 118 15 3 chr13 27775068 27776598 -91968300 + L1PA11 LINE L1 4360 5907 -267 2278 59 3 3 chr13 27776600 27776886 -91968012 + AluY SINE Alu 1 286 -25 849 249 186 16 chr13 27777006 27777387 -91967511 + L2 LINE L2 2868 3313 0 1452 141 25 7 chr13 27778092 27778375 -91966523 - MSTB1 LTR MaLR 0 432 145 277 208 0 0 chr13 27778567 27778620 -91966278 - MLT1H1 LTR MaLR -161 394 342 2511 78 0 0 chr13 27778620 27778929 -91965969 + AluY SINE Alu 1 309 -2 1766 76 61 11 chr13 27778929 27779191 -91965707 + L1PA11 LINE L1 5900 6174 0 4673 113 9 8 chr13 27779191 27779960 -91964938 + L1PA16 LINE L1 5388 6157 -9 212 331 107 0 chr13 27780487 27780608 -91964290 - MIR SINE MIR -6 256 123 2106 123 0 0 chr13 27781868 27782153 -91962745 - AluSg SINE Alu -21 289 5 2025 231 66 42 chr13 27782480 27782869 -91962029 + MLT1E LTR MaLR 1 410 -183 753 228 0 6 chr13 27782869 27783031 -91961867 + FRAM SINE Alu 1 161 -5 2025 231 66 42 chr13 27783031 27783218 -91961680 + MLT1E LTR MaLR 410 591 -2 259 274 81 65 chr13 27783262 27783386 -91961512 + L2 LINE L2 3139 3264 -8 198 103 0 0 chr13 27783396 27783425 -91961473 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 204 232 18 36 chr13 27783908 27783964 -91960934 - MIR SINE MIR -98 164 110 2223 113 7 7 chr13 27784665 27784974 -91959924 - AluSx SINE Alu -3 309 1 703 267 24 6 chr13 27785010 27785175 -91959723 + MER5A DNA MER1_type 18 185 -4 23 92 0 0 chr13 27785194 27785259 -91959639 + AT_rich Low_complexity Low_complexity 1 65 0 2160 69 0 15 chr13 27785260 27785534 -91959364 + AluY SINE Alu 28 297 -14 183 306 0 32 chr13 27785615 27785677 -91959221 + L2 LINE L2 3247 3306 -7 369 179 16 190 chr13 27788259 27788443 -91956455 + MIR SINE MIR 104 255 -7 650 197 48 0 chr13 27788759 27788906 -91955992 - L1MB8 LINE L1 -9 6169 6016 284 167 69 0 chr13 27788979 27789081 -91955817 + (TA)n Simple_repeat Simple_repeat 1 109 0 2762 177 32 18 chr13 27789101 27789660 -91955238 + L1MB3 LINE L1 20 586 -5798 1313 121 5 53 chr13 27789683 27789890 -91955008 + AluSg/x SINE Alu 111 307 -5 1951 145 60 32 chr13 27789893 27790375 -91954523 + L1MB3 LINE L1 1182 1730 -4652 3693 195 65 27 chr13 27790395 27791216 -91953682 - MER21B LTR ERV1 -11 852 1 4904 117 30 18 chr13 27791216 27792220 -91952678 + L1MB3 LINE L1 1616 2634 -3748 388 177 0 0 chr13 27792222 27792284 -91952614 - Tigger7 DNA MER2_type -1 2486 2425 1324 181 23 15 chr13 27792297 27792556 -91952342 - Tigger7 DNA MER2_type -472 261 1 2039 112 49 0 chr13 27792614 27792901 -91951997 + AluSq SINE Alu 1 301 -12 2425 237 38 4 chr13 27792917 27793707 -91951191 + L1MB3 LINE L1 2662 3478 -2904 1511 230 15 0 chr13 27793704 27794096 -91950802 + L1MB3 LINE L1 4943 5340 -1042 * 3870 199 12 8 chr13 27794300 27795190 -91949708 - L1 LINE L1 -1710 4436 3543 1420 219 64 75 chr13 27795417 27795965 -91948933 - MLT1F1 LTR MaLR 0 567 1 279 313 31 0 chr13 27796068 27796164 -91948734 + MIR3 SINE MIR 85 183 -25 216 242 0 32 chr13 27796746 27796808 -91948090 + CT-rich Low_complexity Low_complexity 3 62 0 2540 124 11 0 chr13 27797632 27798003 -91946895 - THE1C LTR MaLR 0 375 1 248 281 16 0 chr13 27798323 27798387 -91946511 + L2 LINE L2 3203 3267 -5 1812 140 37 0 chr13 27798812 27799083 -91945815 + AluSx SINE Alu 5 285 -27 249 83 0 0 chr13 27799083 27799119 -91945779 + (CA)n Simple_repeat Simple_repeat 2 37 0 256 263 0 0 chr13 27799638 27799714 -91945184 + (TATAA)n Simple_repeat Simple_repeat 2 77 0 3584 169 7 16 chr13 27799762 27800454 -91944444 + L1MB3 LINE L1 5692 6377 -42 280 130 145 0 chr13 27800562 27800631 -91944267 + L1MB3 LINE L1 6104 6182 -1 1404 113 45 9 chr13 27802039 27802261 -91942637 - MER30 DNA MER1_type 0 230 1 621 273 32 14 chr13 27802280 27802496 -91942402 + MIR SINE MIR 33 252 -10 255 209 15 0 chr13 27802784 27802851 -91942047 + MLT2C1 LTR ERVL 6 73 -324 * 1255 239 19 38 chr13 27802847 27803215 -91941683 + MLT2C1 LTR ERVL 32 392 -5 322 268 55 9 chr13 27804109 27804250 -91940648 + HAL1b LINE L1 1219 6102 -19 478 39 65 0 chr13 27805082 27805159 -91939739 - L1MA4A LINE L1 -3 6300 6219 486 260 107 56 chr13 27805715 27806132 -91938766 + L2 LINE L2 2708 3165 -148 2139 121 0 0 chr13 27806132 27806442 -91938456 - AluSc SINE Alu 0 310 1 486 260 107 56 chr13 27806442 27806594 -91938304 + L2 LINE L2 3165 3308 -5 224 306 0 14 chr13 27806816 27806888 -91938010 - MIR SINE MIR -190 72 2 236 276 41 10 chr13 27807289 27807387 -91937511 - L1ME4a LINE L1 -11 6110 6010 289 301 108 32 chr13 27807406 27807592 -91937306 - MIR SINE MIR -14 248 49 225 213 38 38 chr13 27807986 27808066 -91936832 + (CTACT)n Simple_repeat Simple_repeat 2 81 0 1913 105 56 0 chr13 27809904 27810171 -91934727 + AluSx SINE Alu 1 282 -30 454 331 84 81 chr13 27810557 27811442 -91933456 + L3 LINE CR1 436 1322 -255 353 183 56 0 chr13 27812179 27812250 -91932648 + MIR SINE MIR 59 133 -129 26 0 0 0 chr13 27812370 27812396 -91932502 + AT_rich Low_complexity Low_complexity 1 26 0 1739 187 0 0 chr13 27812396 27812680 -91932218 + AluJo SINE Alu 1 284 -28 2080 234 49 24 chr13 27812945 27813603 -91931295 + L1M4c LINE L1 1067 1740 -4644 1468 219 0 24 chr13 27813741 27814038 -91930860 + AluJb SINE Alu 1 290 -22 3519 227 52 20 chr13 27814070 27815332 -91929566 + L1M4c LINE L1 2346 3648 -2734 295 340 34 25 chr13 27815820 27815956 -91928942 - MER5A DNA MER1_type -3 175 44 227 219 68 137 chr13 27815840 27815986 -91928912 + MER5A DNA MER1_type 42 177 -12 * 2085 204 12 66 chr13 27816191 27816770 -91928128 + LTR55 LTR ERV 1 548 0 550 275 62 38 chr13 27817271 27817511 -91927387 - L2 LINE L2 -223 3049 2804 1549 239 155 45 chr13 27817546 27818521 -91926377 - L1MC4 LINE L1 0 8042 6961 306 287 139 0 chr13 27821036 27821144 -91923754 - L2 LINE L2 -4 3309 3187 359 325 49 18 chr13 27821573 27821736 -91923162 - MIR3 SINE MIR 0 208 41 699 260 137 13 chr13 27822427 27822727 -91922171 - L2 LINE L2 -785 2529 2193 2142 126 10 0 chr13 27823779 27824088 -91920810 + AluSx SINE Alu 1 312 0 9312 128 49 33 chr13 27824338 27826667 -91918231 - L1P3 LINE L1 -3408 3053 595 11744 185 20 10 chr13 27827739 27831503 -91913395 - L1PB1 LINE L1 -5 6146 2351 1188 273 62 18 chr13 27831586 27832464 -91912434 - L1M4c LINE L1 -4366 2197 1123 1692 246 45 9 chr13 27832465 27832891 -91912007 - MLT1E2 LTR MaLR -49 577 137 1337 197 166 15 chr13 27832961 27833286 -91911612 - MLT1A2 LTR MaLR 0 374 1 272 330 75 82 chr13 27833649 27833882 -91911016 + L2 LINE L2 1678 1908 -1406 1771 164 3 23 chr13 27833882 27834186 -91910712 - AluJo SINE Alu -14 298 1 272 330 75 82 chr13 27834186 27834389 -91910509 + L2 LINE L2 1908 2111 -1203 3718 71 34 0 chr13 27834418 27834914 -91909984 + LTR10D LTR ERV1 1 513 0 399 271 139 20 chr13 27834914 27835065 -91909833 + MIR SINE MIR 42 210 -52 285 140 67 35 chr13 27835246 27835280 -91909618 - L1MB7 LINE L1 -20 6164 6133 2425 67 10 0 chr13 27835280 27835577 -91909321 - AluY SINE Alu -11 300 1 285 140 67 35 chr13 27835577 27835885 -91909013 - L1MB7 LINE L1 -51 6133 5689 * 1153 205 39 6 chr13 27835884 27836240 -91908658 - L1MEc LINE L1 -5276 1120 753 1504 211 14 3 chr13 27836249 27836534 -91908364 - AluJb SINE Alu -24 288 1 734 151 7 82 chr13 27836534 27836680 -91908218 - AluJo SINE Alu -177 135 1 285 276 0 0 chr13 27836687 27836774 -91908124 - L1MEc LINE L1 -5652 744 658 1982 278 162 21 chr13 27838583 27839572 -91905326 - L2 LINE L2 -343 2971 1844 1974 127 43 0 chr13 27839964 27840264 -91904634 + AluSq SINE Alu 1 313 0 2088 117 64 19 chr13 27840535 27840894 -91904004 + THE1C LTR MaLR 1 375 0 312 228 111 76 chr13 27840946 27841117 -91903781 - MIR SINE MIR -42 220 44 3213 220 18 22 chr13 27841277 27842196 -91902702 - L1ME1 LINE L1 -113 6053 5137 1091 182 40 16 chr13 27842207 27842454 -91902444 + L1MB2 LINE L1 5919 6171 0 22 0 0 0 chr13 27842489 27842511 -91902387 + AT_rich Low_complexity Low_complexity 1 22 0 611 226 43 22 chr13 27842538 27842768 -91902130 - L1ME1 LINE L1 -3191 2955 2721 686 265 45 34 chr13 27842769 27843124 -91901774 - L1ME1 LINE L1 -3470 2676 2318 1575 127 35 0 chr13 27843138 27843452 -91901446 - L1PA15 LINE L1 -7 6861 6490 * 2473 152 2 30 chr13 27843444 27844138 -91900760 - L1PA15 LINE L1 -634 6234 5565 7496 237 36 13 chr13 27844155 27846354 -91898544 - L1PA15 LINE L1 -2546 4303 2062 1875 32 119 4 chr13 27846354 27846605 -91898293 - L1PA4 LINE L1 0 6155 5876 7496 237 36 13 chr13 27846605 27847010 -91897888 - L1PA15 LINE L1 -4787 2062 1668 204 40 0 0 chr13 27848304 27848329 -91896569 + (T)n Simple_repeat Simple_repeat 1 25 0 235 254 0 0 chr13 27848336 27848403 -91896495 - L1MEc LINE L1 -3984 2412 2346 362 207 103 21 chr13 27848419 27848564 -91896334 - L1MEc LINE L1 -4097 2299 2143 2130 107 35 0 chr13 27848566 27848856 -91896042 - AluSx SINE Alu -12 300 1 1099 284 76 48 chr13 27848857 27849582 -91895316 - L1MEc LINE L1 -5560 836 92 1852 171 0 3 chr13 27849762 27850055 -91894843 - AluSx SINE Alu -20 292 1 352 316 9 18 chr13 27850764 27850878 -91894020 - L3 LINE CR1 -490 1087 975 23 0 0 0 chr13 27851312 27851335 -91893563 + AT_rich Low_complexity Low_complexity 1 23 0 234 331 139 57 chr13 27851912 27852336 -91892562 - L2 LINE L2 -224 3048 2587 5430 131 29 10 chr13 27852399 27853356 -91891542 - L1PA14 LINE L1 -2 6159 5194 352 264 90 49 chr13 27853533 27853677 -91891221 + MIR SINE MIR 100 249 -13 419 330 58 29 chr13 27853694 27854116 -91890782 + L2 LINE L2 2791 3222 -91 734 186 79 0 chr13 27854245 27854385 -91890513 - MER58A DNA MER1_type 0 157 7 203 313 111 20 chr13 27854433 27854532 -91890366 - L2 LINE L2 -1 3312 3205 304 314 114 43 chr13 27854675 27855000 -91889898 - L2 LINE L2 -780 2534 2187 278 333 35 11 chr13 27855838 27855925 -91888973 - L2 LINE L2 -9 3304 3216 493 290 65 55 chr13 27856154 27856464 -91888434 - L2 LINE L2 -459 2855 2543 2347 181 75 22 chr13 27856492 27856984 -91887914 - MLT2B1 LTR ERVL -2 518 1 207 255 21 0 chr13 27857259 27857306 -91887592 + L2 LINE L2 3181 3228 -44 194 225 50 0 chr13 27857473 27857513 -91887385 - L2 LINE L2 -6 3266 3225 675 265 88 96 chr13 27857640 27858350 -91886548 - HAL1 LINE L1 -755 1752 1038 2194 100 3 35 chr13 27858350 27858669 -91886229 - AluSg SINE Alu 0 310 2 675 265 88 96 chr13 27858669 27858782 -91886116 - HAL1 LINE L1 -1469 1038 934 2258 80 0 7 chr13 27858782 27859070 -91885828 - AluSg SINE Alu -2 308 23 675 265 88 96 chr13 27859070 27859161 -91885737 - HAL1 LINE L1 -1573 934 844 215 146 98 0 chr13 27859588 27859629 -91885269 + MIR SINE MIR 218 262 0 311 301 155 39 chr13 27861253 27861725 -91883173 + L2 LINE L2 2467 3107 -165 1547 173 28 20 chr13 27862181 27862534 -91882364 - L1MB7 LINE L1 -11 6173 5818 315 333 38 33 chr13 27862812 27862995 -91881903 - MLT1F-int LTR MaLR -488 883 700 487 295 10 78 chr13 27863188 27863483 -91881415 - MLT1F-int LTR MaLR -770 601 327 278 253 79 84 chr13 27863478 27863680 -91881218 - MLT1F-int LTR MaLR -1170 201 1 * 1864 209 46 20 chr13 27863680 27864140 -91880758 - MLT1F LTR MaLR 0 542 71 381 310 86 17 chr13 27864267 27864441 -91880457 - MIR SINE MIR -3 259 74 216 331 86 51 chr13 27864928 27865103 -91879795 + L2 LINE L2 3092 3272 0 3311 212 73 14 chr13 27865840 27867486 -91877412 - L1MB5 LINE L1 -9 6165 4416 2480 60 52 0 chr13 27867728 27868075 -91876823 - MLT2A2 LTR ERVL 0 453 89 2145 129 3 0 chr13 27868085 27868380 -91876518 - AluSq SINE Alu -17 296 1 1095 180 78 25 chr13 27868407 27868691 -91876207 - LTR52 LTR ERVL -107 314 16 829 237 11 0 chr13 27868702 27868879 -91876019 - LTR52-int LTR ERVL 0 3556 3378 3599 231 63 56 chr13 27869103 27869432 -91875466 - LTR52-int LTR ERVL -228 3328 3003 1598 214 65 3 chr13 27869432 27869783 -91875115 + MLT1A2 LTR MaLR 2 374 0 3599 231 63 56 chr13 27869783 27870524 -91874374 - LTR52-int LTR ERVL -553 3003 2251 3521 198 65 78 chr13 27870696 27871740 -91873158 - LTR52-int LTR ERVL -3587 2098 1069 509 165 21 0 chr13 27871847 27871944 -91872954 - LTR52-int LTR ERVL -2616 940 842 186 133 0 0 chr13 27871951 27871981 -91872917 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2008 138 6 32 chr13 27871981 27872293 -91872605 - AluSx SINE Alu -8 304 1 1804 161 42 17 chr13 27872337 27872698 -91872200 + MSTB LTR MaLR 1 370 -56 5574 134 36 3 chr13 27872723 27873870 -91871028 - L1PA16 LINE L1 -2 6164 5000 5456 180 20 1 chr13 27873870 27875044 -91869854 - L1 LINE L1 -1297 5500 4304 245 149 0 0 chr13 27875042 27875089 -91869809 - L1 LINE L1 -1496 5301 5255 * 284 145 48 0 chr13 27875101 27875163 -91869735 - L1 LINE L1 -2494 4303 4239 * 5038 226 30 12 chr13 27875135 27875221 -91869677 - L1PA13 LINE L1 -3025 3772 3689 2283 99 0 3 chr13 27875221 27875515 -91869383 + AluY SINE Alu 1 293 -18 5038 226 30 12 chr13 27875515 27877820 -91867078 - L1PA13 LINE L1 -3108 3689 1330 1674 316 15 13 chr13 27878057 27878668 -91866230 - L1PA13 LINE L1 -6175 612 1 313 169 31 0 chr13 27878675 27878740 -91866158 + MSTB LTR MaLR 360 426 0 1887 223 80 61 chr13 27878774 27879425 -91865473 - LTR52-int LTR ERVL -2882 674 12 352 200 27 0 chr13 27879432 27879503 -91865395 - LTR52 LTR ERVL 0 421 349 2283 189 17 28 chr13 27879503 27880022 -91864876 + LTR27 LTR ERV1 1 577 -138 249 218 67 99 chr13 27880037 27880219 -91864679 + LTR27 LTR ERV1 500 636 0 1026 184 33 95 chr13 27880225 27880561 -91864337 - LTR52 LTR ERVL -74 347 33 2312 117 0 0 chr13 27880599 27880899 -91863999 + AluSc SINE Alu 1 300 -9 1485 209 14 3 chr13 27880924 27881279 -91863619 - L1 LINE L1 -1725 4421 4063 322 313 47 16 chr13 27882807 27882935 -91861963 - MIR SINE MIR -108 154 23 21 0 0 0 chr13 27883422 27883443 -91861455 + AT_rich Low_complexity Low_complexity 1 21 0 2835 182 15 26 chr13 27885883 27886486 -91858412 - MER7C DNA MER2_type -1 601 6 344 211 158 0 chr13 27886915 27887010 -91857888 - MIR3 SINE MIR -11 197 88 236 315 121 6 chr13 27887154 27887319 -91857579 - L3 LINE CR1 -96 1481 1298 1314 168 17 4 chr13 27887672 27887904 -91856994 + MER46A DNA MER2_type 2 236 0 195 402 52 35 chr13 27888695 27889043 -91855855 + L2 LINE L2 2112 2465 -849 1951 126 29 0 chr13 27889059 27889337 -91855561 - AluSg1 SINE Alu -23 286 1 213 336 42 17 chr13 27889908 27890027 -91854871 + L2 LINE L2 3160 3281 -32 283 125 62 0 chr13 27890491 27890539 -91854359 + U2 snRNA snRNA 1 51 -137 266 217 6 93 chr13 27891532 27891693 -91853205 + L1MC5 LINE L1 7764 7910 -51 26 30 0 0 chr13 27891731 27891764 -91853134 + AT_rich Low_complexity Low_complexity 1 33 0 1575 129 64 10 chr13 27891802 27891946 -91852952 - L1MA9 LINE L1 0 6312 6177 189 107 0 0 chr13 27891946 27891974 -91852924 + (TG)n Simple_repeat Simple_repeat 1 28 0 1575 129 64 10 chr13 27891974 27892124 -91852774 - L1MA9 LINE L1 -135 6177 6002 799 215 30 80 chr13 27892142 27892379 -91852519 + MIR SINE MIR 12 236 -26 272 273 56 56 chr13 27893593 27893736 -91851162 + MIR3 SINE MIR 61 203 -5 201 363 79 25 chr13 27894312 27894552 -91850346 - L2 LINE L2 -1890 1424 1172 692 226 100 0 chr13 27894932 27895122 -91849776 + MER3 DNA MER1_type 1 209 0 2432 141 29 14 chr13 27895280 27895698 -91849200 + MSTA LTR MaLR 1 424 -4 2539 185 43 21 chr13 27897598 27898132 -91846766 - MER44D DNA MER2_type -4 601 1 274 315 62 51 chr13 27899381 27899559 -91845339 - MIR3 SINE MIR -2 206 27 290 282 112 16 chr13 27899908 27900096 -91844802 + MIR3 SINE MIR 3 208 0 1379 206 33 23 chr13 27900768 27901074 -91843824 - MLT2B1 LTR ERVL -211 309 1 313 276 73 83 chr13 27901074 27901483 -91843415 + L1ME LINE L1 5263 5667 -454 8736 198 55 54 chr13 27951675 27952616 -91792282 - ERVL LTR ERVL -3677 2087 1148 183 103 77 26 chr13 27952616 27952655 -91792243 + MER5B DNA MER1_type 84 124 -54 8736 198 55 54 chr13 27952655 27953682 -91791216 - ERVL LTR ERVL -4616 1148 79 425 215 32 11 chr13 27953689 27953782 -91791116 - MIR SINE MIR -89 173 79 2221 125 3 0 chr13 27953828 27954193 -91790705 - AluSx SINE Alu 0 366 1 215 359 75 19 chr13 27954367 27954526 -91790372 - L3 LINE CR1 -789 788 621 640 254 59 32 chr13 27955808 27956028 -91788870 + MIR SINE MIR 3 228 -34 1879 98 119 28 chr13 27956259 27956544 -91788354 - AluSx SINE Alu -1 311 1 828 236 31 145 chr13 27956940 27957405 -91787493 + L1MC4 LINE L1 6688 7023 -938 1672 76 34 42 chr13 27957405 27957478 -91787420 + L1MA4 LINE L1 6034 6106 -194 2083 128 0 10 chr13 27957478 27957782 -91787116 - AluSq SINE Alu -12 301 1 1672 76 34 42 chr13 27957782 27957971 -91786927 + L1MA4 LINE L1 6106 6294 -6 828 236 31 145 chr13 27957971 27958147 -91786751 + L1MC4 LINE L1 7023 7218 -743 286 307 115 0 chr13 27958144 27958391 -91786507 + L1MC5 LINE L1 7244 7414 -394 * 2057 128 0 0 chr13 27958637 27958925 -91785973 - AluSx SINE Alu -24 288 1 24 32 0 0 chr13 27958994 27959025 -91785873 + AT_rich Low_complexity Low_complexity 1 31 0 1617 87 28 90 chr13 27959269 27959557 -91785341 + L1MA9 LINE L1 6038 6307 -5 2915 223 102 26 chr13 27961050 27962022 -91782876 + L1MDb LINE L1 917 1927 -4613 1489 75 4 120 chr13 27962023 27962264 -91782634 + AluSx SINE Alu 1 213 -99 246 276 26 0 chr13 27962419 27962495 -91782403 + L1MDb LINE L1 1929 2006 -4534 * 475 108 0 0 chr13 27962491 27962556 -91782342 + L1P5 LINE L1 5718 5782 -369 361 115 0 0 chr13 27962557 27962609 -91782289 + MADE1 DNA Mariner 1 52 -28 645 216 53 12 chr13 27962615 27962786 -91782112 + L1MDb LINE L1 1376 1553 -4987 269 0 0 0 chr13 27962826 27962857 -91782041 + MADE1 DNA Mariner 36 66 -14 253 0 0 0 chr13 27962857 27962886 -91782012 + MADE1 DNA Mariner 38 66 -14 348 45 0 0 chr13 27962913 27962957 -91781941 + MADE1 DNA Mariner 36 79 -1 761 16 57 0 chr13 27962958 27963081 -91781817 + (TA)n Simple_repeat Simple_repeat 1 130 0 2539 109 20 0 chr13 27963081 27963429 -91781469 + L1PB3 LINE L1 5792 6146 -8 342 67 0 0 chr13 27963435 27963480 -91781418 + (TG)n Simple_repeat Simple_repeat 2 46 0 25 0 0 0 chr13 27963480 27963505 -91781393 + AT_rich Low_complexity Low_complexity 1 25 0 1438 223 95 20 chr13 27963506 27963999 -91780899 + L1MDb LINE L1 2020 2549 -3991 547 242 135 17 chr13 27964019 27964197 -91780701 + MER58A DNA MER1_type 48 212 -12 447 222 14 77 chr13 27964209 27964416 -91780482 + L1MDb LINE L1 2556 2749 -3791 361 329 32 7 chr13 27967428 27967583 -91777315 - MER5B DNA MER1_type -2 176 18 304 330 59 38 chr13 27968410 27968538 -91776360 + L1M4 LINE L1 5091 5228 -918 1809 146 6 56 chr13 27968538 27968859 -91776039 + AluSx SINE Alu 1 305 -7 304 330 59 38 chr13 27968859 27968969 -91775929 + L1M4 LINE L1 5228 5334 -812 384 104 0 0 chr13 27969991 27970058 -91774840 + LOR1-int LTR ERV1 2560 2626 -5494 765 255 104 68 chr13 27970058 27970377 -91774521 - L1MEd LINE L1 -4911 1208 902 4385 92 2 5 chr13 27970377 27970933 -91773965 + MER41A LTR ERV1 1 554 0 765 255 104 68 chr13 27970933 27971217 -91773681 - L1MEd LINE L1 -5217 902 583 2273 114 0 9 chr13 27971348 27971663 -91773235 - AluSx SINE Alu 0 312 1 475 276 147 6 chr13 27972235 27972398 -91772500 - MER5A DNA MER1_type 0 189 4 490 117 39 39 chr13 27972778 27972881 -91772017 + LTR16A1 LTR ERVL 341 443 -14 313 182 18 0 chr13 27973409 27973464 -91771434 - L2 LINE L2 -4 3309 3254 551 297 53 30 chr13 27974300 27974563 -91770335 + L2 LINE L2 2366 2634 -680 624 171 0 0 chr13 27974566 27974671 -91770227 + MER4D LTR ERV1 110 214 -689 837 258 80 76 chr13 27974929 27975405 -91769493 - MLT1J LTR MaLR 0 511 34 3272 223 24 19 chr13 27975693 27976517 -91768381 + L1MDa LINE L1 2541 3373 -3167 1324 117 0 11 chr13 27976684 27976863 -91768035 - AluSq SINE Alu -16 297 121 499 293 51 40 chr13 27976966 27977318 -91767580 + L1MC5 LINE L1 7372 7727 -234 2073 130 26 13 chr13 27977371 27977645 -91767253 + AluSx SINE Alu 1 281 -31 204 67 0 0 chr13 27977645 27977675 -91767223 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2073 130 26 13 chr13 27977675 27977707 -91767191 + AluSx SINE Alu 281 311 -1 225 267 30 52 chr13 27977805 27977940 -91766958 + L1MC5 LINE L1 7806 7937 -24 330 153 97 0 chr13 27978440 27978512 -91766386 - L1MB2 LINE L1 -7 6164 6086 390 184 0 13 chr13 27978543 27978619 -91766279 + Tigger5 DNA MER2_type 2243 2317 -6 304 203 116 0 chr13 27978623 27978692 -91766206 - Tigger5 DNA MER2_type -2246 77 1 1389 137 39 0 chr13 27978692 27978926 -91765972 - L1MB2 LINE L1 -82 6089 5847 463 133 33 0 chr13 27978990 27979080 -91765818 - L1MB2 LINE L1 -338 5845 5753 250 282 70 54 chr13 27979263 27979356 -91765542 - L1MEc LINE L1 -5302 903 813 2017 172 0 0 chr13 27979356 27979658 -91765240 - AluJb SINE Alu -10 302 1 250 282 70 54 chr13 27979658 27979872 -91765026 - L1MEc LINE L1 -5392 813 651 375 328 95 4 chr13 27980237 27980478 -91764420 - L1MEc LINE L1 -6096 300 38 2132 200 11 27 chr13 27981503 27981977 -91762921 - MER31B LTR ERV1 0 466 1 481 311 29 69 chr13 27982345 27982622 -91762276 - L2 LINE L2 0 3272 3007 304 354 56 21 chr13 27982792 27983077 -91761821 - L2 LINE L2 -537 2777 2483 424 62 0 46 chr13 27983460 27983525 -91761373 - Alu SINE Alu -247 64 3 1467 285 61 53 chr13 27983532 27983914 -91760984 - L1M4 LINE L1 -694 5480 5103 2006 128 0 17 chr13 27983914 27984233 -91760665 - AluSx SINE Alu 0 314 1 1467 285 61 53 chr13 27984233 27985647 -91759251 - L1M4 LINE L1 -1071 5103 3664 1244 164 0 15 chr13 27985708 27985909 -91758989 + AluJo SINE Alu 7 204 -108 999 301 78 27 chr13 27986393 27987034 -91757864 + L2 LINE L2 2466 3137 -176 2068 111 21 0 chr13 27987066 27987370 -91757528 + AluSx SINE Alu 1 310 0 180 309 176 22 chr13 27987763 27987899 -91756999 + MIR SINE MIR 86 242 -20 2285 104 10 0 chr13 27988028 27988327 -91756571 - AluSx SINE Alu -10 302 1 369 259 152 12 chr13 27988623 27988866 -91756032 + L1ME4a LINE L1 5600 5876 -245 21 0 0 0 chr13 27988942 27988963 -91755935 + AT_rich Low_complexity Low_complexity 1 21 0 281 221 42 11 chr13 27989086 27989181 -91755717 + (TA)n Simple_repeat Simple_repeat 1 98 0 3397 126 40 5 chr13 27989313 27989867 -91755031 + Tigger3(Golem) DNA MER2_type 2457 3029 0 180 152 0 0 chr13 27989874 27989907 -91754991 + (TATG)n Simple_repeat Simple_repeat 3 35 0 836 123 20 20 chr13 27990086 27990232 -91754666 - L1MB8 LINE L1 -5 6173 6028 390 195 145 19 chr13 27991370 27991529 -91753369 - MER97a DNA MER1_type? -28 866 688 1315 277 40 11 chr13 27991530 27991977 -91752921 + L1MC4 LINE L1 7432 7891 -151 913 230 9 22 chr13 27992073 27992299 -91752599 - MER97a DNA MER1_type? -667 227 5 294 370 69 12 chr13 27993237 27993410 -91751488 - MER5A DNA MER1_type -2 187 5 246 280 30 40 chr13 27993419 27993519 -91751379 + MIR SINE MIR 30 128 -80 388 227 241 20 chr13 27994059 27994262 -91750636 + L2 LINE L2 2841 3088 -225 270 0 0 0 chr13 27994481 27994511 -91750387 + (TG)n Simple_repeat Simple_repeat 2 31 0 193 320 13 26 chr13 27996279 27996357 -91748541 - L2 LINE L2 -17 3255 3179 1321 133 9 39 chr13 27997002 27997235 -91747663 + MER4D LTR ERV1 678 903 0 613 141 0 10 chr13 27997272 27997371 -91747527 + MER4A LTR ERV1 1 98 -566 1930 111 3 24 chr13 27997371 27997724 -91747174 + MER4A LTR ERV1 261 664 0 985 175 113 0 chr13 27998439 27998668 -91746230 - L1MB3 LINE L1 -2 6181 5927 230 185 31 15 chr13 27998730 27998795 -91746103 + L1ME1 LINE L1 6094 6159 -7 1551 147 11 92 chr13 27998952 27999189 -91745709 + L1MB3 LINE L1 5834 6036 -147 2240 89 33 7 chr13 27999189 27999493 -91745405 - AluSx SINE Alu 0 312 1 1551 147 11 92 chr13 27999493 27999602 -91745296 + L1MB3 LINE L1 6036 6152 -31 218 155 52 17 chr13 27999615 27999673 -91745225 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 261 343 71 29 chr13 28001313 28001453 -91743445 - MIR SINE MIR -115 147 2 738 111 23 32 chr13 28001472 28001693 -91743205 + (TCCA)n Simple_repeat Simple_repeat 1 219 0 198 348 141 0 chr13 28002181 28002273 -91742625 + MIR SINE MIR 42 146 -62 2548 105 40 14 chr13 28002372 28002725 -91742173 - THE1B LTR MaLR -2 362 1 2324 100 0 0 chr13 28004194 28004494 -91740404 - AluY SINE Alu -11 300 1 707 179 21 0 chr13 28004652 28004797 -91740101 + L1MA4A LINE L1 6154 6301 -2 488 178 57 19 chr13 28006070 28006227 -91738671 + L1MCa LINE L1 2306 2468 -3958 929 158 0 0 chr13 28006229 28006362 -91738536 + FLAM_C SINE Alu 1 133 0 1345 170 123 38 chr13 28006380 28006477 -91738421 + MSTD LTR MaLR 1 88 -308 1124 154 6 11 chr13 28006477 28006652 -91738246 + FAM SINE Alu 1 174 -1 1345 170 123 38 chr13 28006652 28006919 -91737979 + MSTD LTR MaLR 88 396 0 726 253 52 17 chr13 28006919 28007152 -91737746 + L1MCa LINE L1 2491 2731 -3695 1152 156 6 0 chr13 28007381 28007548 -91737350 + AluJ SINE Alu 115 282 -30 204 135 0 0 chr13 28007550 28007587 -91737311 + (TC)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr13 28007592 28007613 -91737285 + (TG)n Simple_repeat Simple_repeat 2 22 0 191 325 68 77 chr13 28008504 28008621 -91736277 + L3b LINE CR1 1445 1560 -23 674 205 94 0 chr13 28009442 28009613 -91735285 - MER53 DNA DNA 0 189 3 1022 176 11 0 chr13 28010667 28010855 -91734043 - MLT1A1 LTR MaLR -175 190 1 359 262 153 15 chr13 28012436 28012468 -91732430 + MER112 DNA MER1_type 29 55 -205 387 0 0 0 chr13 28012468 28012511 -91732387 + (CA)n Simple_repeat Simple_repeat 2 44 0 359 262 153 15 chr13 28012511 28012680 -91732218 + MER112 DNA MER1_type 55 258 -2 348 318 7 7 chr13 28013248 28013402 -91731496 + (CA)n Simple_repeat Simple_repeat 1 154 0 412 242 83 25 chr13 28013814 28013934 -91730964 - L2 LINE L2 -10 3262 3136 182 88 0 29 chr13 28018586 28018620 -91726278 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 350 71 29 chr13 28031308 28031448 -91713450 - MIR SINE MIR -115 147 2 738 111 23 32 chr13 28031467 28031688 -91713210 + (TCCA)n Simple_repeat Simple_repeat 1 219 0 190 316 86 70 chr13 28031701 28031888 -91713010 - L2 LINE L2 -38 3234 3045 213 222 0 0 chr13 28032973 28033018 -91711880 + MIR SINE MIR 101 145 -63 1355 155 10 113 chr13 28037694 28038003 -91706895 + AluJo SINE Alu 35 311 -1 368 266 44 35 chr13 28038565 28038768 -91706130 + L1MC4a LINE L1 5853 6057 -1751 622 233 23 79 chr13 28039295 28039561 -91705337 + MLT1J LTR MaLR 11 261 -250 285 256 96 24 chr13 28039595 28039720 -91705178 + MLT1J LTR MaLR 354 487 -24 21 0 0 0 chr13 28040400 28040421 -91704477 + AT_rich Low_complexity Low_complexity 1 21 0 261 272 143 47 chr13 28040870 28041149 -91703749 + MLT1J LTR MaLR 111 416 -95 1909 146 21 4 chr13 28043032 28043340 -91701558 + AluSx SINE Alu 1 313 0 404 247 34 102 chr13 28044653 28044888 -91700010 + MER112 DNA MER1_type 28 246 -14 344 277 105 45 chr13 28046549 28046816 -91698082 + L1ME4a LINE L1 5591 5873 -248 401 289 79 9 chr13 28046885 28046999 -91697899 + L2 LINE L2 3151 3272 0 26 0 0 0 chr13 28048112 28048138 -91696760 + AT_rich Low_complexity Low_complexity 1 26 0 2389 187 113 16 chr13 28048568 28049189 -91695709 + L1MC3 LINE L1 7104 7784 -1 302 315 54 0 chr13 28049563 28049674 -91695224 - MIR3 SINE MIR -7 201 85 203 326 68 30 chr13 28051509 28051641 -91693257 - MIR SINE MIR -50 212 76 211 291 109 18 chr13 28052384 28052537 -91692361 - MIR3 SINE MIR -39 169 1 544 304 52 5 chr13 28052543 28052737 -91692161 + Charlie8 DNA MER1_type 1 203 -2214 1932 93 54 32 chr13 28053666 28053979 -91690919 - THE1B LTR MaLR -44 320 1 2159 108 0 10 chr13 28055259 28055555 -91689343 + AluY SINE Alu 1 293 -18 306 0 0 0 chr13 28055598 28055632 -91689266 + (TG)n Simple_repeat Simple_repeat 2 35 0 434 300 82 39 chr13 28057743 28058000 -91686898 + L1ME4a LINE L1 5638 5905 -216 23 54 0 0 chr13 28058112 28058149 -91686749 + AT_rich Low_complexity Low_complexity 1 37 0 2417 76 3 0 chr13 28058264 28058555 -91686343 + AluSq SINE Alu 1 292 -21 1265 168 39 13 chr13 28058555 28058787 -91686111 + AluJb SINE Alu 59 296 -16 243 297 68 51 chr13 28059095 28059213 -91685685 - L2 LINE L2 -8 3264 3145 256 262 0 71 chr13 28059735 28059968 -91684930 + GA-rich Low_complexity Low_complexity 1 216 0 377 250 11 11 chr13 28060633 28060721 -91684177 + MER5B DNA MER1_type 1 88 -90 263 286 41 20 chr13 28061534 28061632 -91683266 + MIR SINE MIR 117 216 -46 207 0 0 0 chr13 28062117 28062140 -91682758 + (CCTAT)n Simple_repeat Simple_repeat 3 25 0 337 374 46 10 chr13 28062976 28063171 -91681727 - MIR SINE MIR -59 203 2 250 182 0 0 chr13 28064092 28064136 -91680762 + MER116 DNA Mariner 1 44 -36 2029 138 14 7 chr13 28065757 28066054 -91678844 - AluSx SINE Alu -13 299 1 256 275 38 0 chr13 28066550 28066630 -91678268 + MLT1E1 LTR MaLR 319 401 -253 * 1047 223 27 29 chr13 28066609 28066922 -91677976 + MLT1E LTR MaLR 272 547 -46 234 298 24 12 chr13 28067315 28067399 -91677499 - L2 LINE L2 -4 3268 3184 399 21 0 0 chr13 28068314 28068362 -91676536 + (CA)n Simple_repeat Simple_repeat 2 49 0 3257 113 51 2 chr13 28068517 28069004 -91675894 + MER9 LTR ERVK 1 511 0 181 255 248 60 chr13 28069716 28069865 -91675033 + L3 LINE CR1 901 1077 -500 378 277 91 41 chr13 28070956 28071168 -91673730 - L1MC4 LINE L1 0 8042 7807 2909 3 0 0 chr13 28071168 28071474 -91673424 + AluYa5 SINE Alu 1 306 -5 378 277 91 41 chr13 28071474 28071579 -91673319 - L1MC4 LINE L1 -235 7807 7709 3074 205 94 16 chr13 28071781 28072464 -91672434 + Charlie1 DNA MER1_type 1890 2647 -114 1904 171 0 10 chr13 28072464 28072768 -91672130 - AluJb SINE Alu -11 301 1 3074 205 94 16 chr13 28072768 28072893 -91672005 + Charlie1 DNA MER1_type 2647 2761 0 1974 130 56 37 chr13 28073386 28073762 -91671136 - Tigger3b DNA MER2_type 0 1232 850 402 167 75 46 chr13 28073789 28074044 -91670854 + (TGAG)n Simple_repeat Simple_repeat 1 262 0 957 152 45 15 chr13 28074046 28074216 -91670682 - Tigger3b DNA MER2_type -2144 884 706 2556 46 7 10 chr13 28074216 28074519 -91670379 - AluY SINE Alu -7 304 3 957 152 45 15 chr13 28074519 28074546 -91670352 - Tigger3b DNA MER2_type -2322 706 681 2630 48 0 10 chr13 28075199 28075509 -91669389 - AluY SINE Alu -2 309 3 2299 119 58 5 chr13 28075515 28075926 -91668972 - Tigger3b DNA MER2_type -528 703 271 306 190 139 13 chr13 28075927 28076006 -91668892 - L1MC4 LINE L1 -1342 6700 6612 1324 205 40 0 chr13 28076031 28076304 -91668594 - Tigger3b DNA MER2_type -947 284 1 23 33 0 0 chr13 28076446 28076476 -91668422 + AT_rich Low_complexity Low_complexity 1 30 0 398 270 108 9 chr13 28076530 28076641 -91668257 - L2 LINE L2 0 3313 3192 564 216 22 36 chr13 28077788 28077854 -91667044 - L1MA8 LINE L1 -5 6286 6221 1400 168 17 9 chr13 28077854 28078086 -91666812 + MER46A DNA MER2_type 1 234 -2 564 216 22 36 chr13 28078086 28078158 -91666740 - L1MA8 LINE L1 -70 6221 6150 864 190 123 0 chr13 28078615 28078810 -91666088 + MER20 DNA MER1_type 1 219 0 287 257 6 109 chr13 28079771 28079946 -91664952 - MIR SINE MIR 0 262 106 282 318 91 11 chr13 28080153 28080328 -91664570 + MIR SINE MIR 20 206 -56 629 146 16 24 chr13 28081561 28081684 -91663214 + L1MB3 LINE L1 6061 6182 -1 2764 187 64 3 chr13 28081709 28082287 -91662611 + L1MB7 LINE L1 5572 6184 0 409 219 6 130 chr13 28084137 28084306 -91660592 + MER58C DNA MER1_type 45 192 -23 332 163 33 43 chr13 28084862 28084954 -91659944 + LTR33 LTR ERVL 423 513 -8 208 191 85 0 chr13 28085208 28085255 -91659643 - L2 LINE L2 -8 3264 3214 206 298 95 0 chr13 28085286 28085370 -91659528 - MIR SINE MIR -116 146 55 298 264 103 0 chr13 28085866 28085953 -91658945 + MIR SINE MIR 64 159 -103 1601 152 7 39 chr13 28086062 28086371 -91658527 + AluJo SINE Alu 1 299 -13 369 228 315 0 chr13 28086373 28086500 -91658398 + MIR SINE MIR 92 258 -4 337 100 129 57 chr13 28086616 28086686 -91658212 - MADE1 DNA Mariner 0 80 6 642 148 4 179 chr13 28089100 28089329 -91655569 - MER53 DNA DNA 0 189 1 2202 77 7 3 chr13 28090141 28090441 -91654457 - AluY SINE Alu -10 301 1 1662 192 0 19 chr13 28091503 28091820 -91653078 + AluJo SINE Alu 1 311 -1 1911 113 0 8 chr13 28094861 28095127 -91649771 - AluSx SINE Alu -15 297 34 219 250 109 77 chr13 28095560 28095716 -91649182 - MIR3 SINE MIR -21 187 27 346 234 13 0 chr13 28097560 28097637 -91647261 - MIR SINE MIR -74 188 111 214 282 111 34 chr13 28097963 28098080 -91646818 - L2 LINE L2 -1 3271 3146 290 233 0 0 chr13 28098148 28098208 -91646690 + MER5A DNA MER1_type 47 106 -83 1870 86 0 107 chr13 28099619 28099956 -91644942 - AluSc SINE Alu -8 301 1 574 224 6 73 chr13 28100905 28101084 -91643814 - MER112 DNA MER1_type -91 169 3 226 217 319 0 chr13 28101849 28101918 -91642980 - L2 LINE L2 -6 3307 3217 330 259 159 45 chr13 28101920 28102121 -91642777 - L1ME4a LINE L1 -139 5982 5759 391 204 41 0 chr13 28103481 28103579 -91641319 + L1ME4a LINE L1 6011 6112 -9 1082 202 19 90 chr13 28103665 28104004 -91640894 + L1MC4 LINE L1 7686 7999 -43 1989 132 3 6 chr13 28104004 28104315 -91640583 - AluSx SINE Alu -2 310 1 1082 202 19 90 chr13 28104315 28104342 -91640556 + L1MC4 LINE L1 7999 8026 -16 408 263 191 26 chr13 28105299 28105493 -91639405 + MIR SINE MIR 37 262 0 330 169 0 0 chr13 28105878 28105943 -91638955 + (CA)n Simple_repeat Simple_repeat 2 66 0 1485 178 3 24 chr13 28106332 28106624 -91638274 + AluJb SINE Alu 1 286 -26 338 236 36 45 chr13 28106679 28106789 -91638109 - MIR SINE MIR -1 261 153 358 247 226 14 chr13 28108683 28108829 -91636069 + L2 LINE L2 2366 2542 -772 25 90 0 0 chr13 28110801 28110868 -91634030 + GC_rich Low_complexity Low_complexity 1 67 0 213 94 0 0 chr13 28111008 28111040 -91633858 + (CGGGG)n Simple_repeat Simple_repeat 1 32 0 205 78 0 78 chr13 28111200 28111251 -91633647 + (CCCCCG)n Simple_repeat Simple_repeat 1 47 0 612 140 7 127 chr13 28111679 28111829 -91633069 - FLAM_C SINE Alu -1 132 1 1213 224 11 14 chr13 28112368 28112654 -91632244 - AluJo SINE Alu -15 297 13 899 198 6 0 chr13 28112717 28112879 -91632019 - FRAM SINE Alu -3 163 1 232 158 18 35 chr13 28112881 28112938 -91631960 + MIR SINE MIR 201 256 -6 2136 104 3 0 chr13 28112954 28113262 -91631636 + AluSc SINE Alu 1 309 0 225 329 35 12 chr13 28113431 28113516 -91631382 + MIR SINE MIR 31 117 -145 183 184 0 0 chr13 28113583 28113621 -91631277 + CT-rich Low_complexity Low_complexity 2 39 0 292 287 132 52 chr13 28114182 28114356 -91630542 + MIR SINE MIR 20 207 -55 2239 164 31 31 chr13 28114385 28114807 -91630091 - MSTB1 LTR MaLR -3 429 8 5713 171 61 30 chr13 28114820 28115291 -91629607 + L1MC2 LINE L1 4829 5284 -1060 1911 129 0 3 chr13 28115291 28115612 -91629286 + AluSq SINE Alu 1 320 0 5713 171 61 30 chr13 28115612 28116415 -91628483 + L1MC2 LINE L1 5284 6165 -179 2105 113 7 0 chr13 28116415 28116715 -91628183 + AluSq SINE Alu 1 302 -11 5713 171 61 30 chr13 28116715 28116890 -91628008 + L1MC2 LINE L1 6165 6333 -11 586 321 106 17 chr13 28117022 28117259 -91627639 + MIR SINE MIR 4 261 -1 250 250 29 0 chr13 28117932 28118000 -91626898 + MLT1K LTR MaLR 519 588 0 1911 208 77 64 chr13 28118335 28118882 -91626016 - MLT2B3 LTR ERVL 0 554 1 452 311 48 48 chr13 28118890 28119022 -91625876 + L1ME4a LINE L1 5652 5783 -338 2971 185 43 2 chr13 28119022 28119557 -91625341 - MER41D LTR ERV1 0 557 1 452 311 48 48 chr13 28119557 28119733 -91625165 + L1ME4a LINE L1 5782 5960 -161 415 169 0 0 chr13 28120149 28120214 -91624684 + Tigger2 DNA MER2_type 3 67 -2651 2791 138 28 2 chr13 28120216 28120643 -91624255 + Tigger2 DNA MER2_type 2280 2717 -1 2058 186 5 25 chr13 28121039 28121437 -91623461 + MLT1B LTR MaLR 1 390 0 377 335 89 15 chr13 28121870 28122049 -91622849 + MIR SINE MIR 4 192 -70 222 228 18 18 chr13 28122084 28122141 -91622757 + CT-rich Low_complexity Low_complexity 5 61 0 378 288 131 19 chr13 28122773 28122933 -91621965 + MIR SINE MIR 85 262 0 825 184 173 0 chr13 28123225 28123410 -91621488 - MER20 DNA MER1_type -1 218 2 465 244 0 0 chr13 28123875 28123961 -91620937 - FRAM/FAM SINE Alu -91 85 1 835 261 5 0 chr13 28124740 28124928 -91619970 + MIR SINE MIR 71 259 -3 956 163 6 17 chr13 28124929 28125107 -91619791 + AluJo SINE Alu 125 300 -12 710 249 104 73 chr13 28125292 28125714 -91619184 + MLT1K LTR MaLR 154 588 0 281 280 114 45 chr13 28125783 28125915 -91618983 + L2 LINE L2 3132 3272 0 2221 106 0 0 chr13 28126071 28126374 -91618524 - AluSg SINE Alu -7 303 1 275 262 141 40 chr13 28126807 28126956 -91617942 - MLT1K LTR MaLR -81 507 344 259 313 16 31 chr13 28127017 28127145 -91617753 - MLT1K LTR MaLR -341 247 122 1952 122 3 7 chr13 28127803 28128099 -91616799 - AluSx SINE Alu 0 312 18 222 338 62 28 chr13 28129501 28129646 -91615252 - MIR SINE MIR -46 216 67 723 248 100 34 chr13 28129731 28130202 -91614696 + L1MDa LINE L1 1569 2070 -4470 3614 94 31 2 chr13 28130397 28130984 -91613914 + L1PB1 LINE L1 1540 2143 -4720 13807 181 14 3 chr13 28130990 28135186 -91609712 + L1PB1 LINE L1 2567 6866 -1 408 308 165 45 chr13 28135244 28135861 -91609037 - L1M4 LINE L1 -964 5182 4492 579 300 99 32 chr13 28135939 28136535 -91608363 + L1MEd LINE L1 325 960 -5159 4046 145 26 22 chr13 28136535 28136771 -91608127 + L1MB3 LINE L1 5450 5684 -499 3075 171 45 15 chr13 28136771 28137214 -91607684 - MER7C DNA MER2_type -2426 602 136 2188 91 3 3 chr13 28137214 28137501 -91607397 + AluSc SINE Alu 1 287 -22 3075 171 45 15 chr13 28137501 28137641 -91607257 - MER7C DNA MER2_type -2892 136 2 4046 145 26 22 chr13 28137641 28138128 -91606770 + L1MB3 LINE L1 5684 6176 -7 201 108 0 0 chr13 28138134 28138171 -91606727 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 242 242 16 16 chr13 28138625 28138687 -91606211 + L1MCa LINE L1 561 622 -5497 302 272 19 71 chr13 28138842 28139203 -91605695 + L1MCa LINE L1 820 1177 -5125 1400 164 10 103 chr13 28139203 28139514 -91605384 + AluJo SINE Alu 1 282 -30 302 272 19 71 chr13 28139514 28139743 -91605155 + L1MCa LINE L1 1177 1416 -4886 238 61 0 0 chr13 28139874 28139907 -91604991 + L1M1 LINE L1 2882 2914 -4651 715 206 0 0 chr13 28139914 28140045 -91604853 + FLAM_A SINE Alu 3 133 0 22398 177 17 38 chr13 28140082 28144463 -91600435 + L1PA11 LINE L1 1 5601 -2011 332 90 11 0 chr13 28144463 28144523 -91600375 + Alu SINE Alu 251 300 0 22398 177 17 38 chr13 28144523 28145808 -91599090 + L1PA11 LINE L1 5601 6911 -701 28919 112 14 62 chr13 28145856 28148402 -91596496 - L1PA7 LINE L1 -13 6141 3475 2180 96 0 46 chr13 28148402 28148725 -91596173 - AluY SINE Alu -3 308 1 28919 112 14 62 chr13 28148725 28152618 -91592280 - L1PA7 LINE L1 -2679 3475 20 4707 113 31 3 chr13 28152618 28153326 -91591572 + L1PA11 LINE L1 6883 7610 -2 361 249 0 60 chr13 28153339 28153524 -91591374 + L1MCa LINE L1 1473 1698 -4486 604 207 8 0 chr13 28153759 28153880 -91591018 - AluJb SINE Alu -19 293 172 1817 275 40 52 chr13 28153913 28154691 -91590207 + L1MCa LINE L1 2263 3049 -3080 2334 94 0 0 chr13 28154691 28154979 -91589919 - AluSc SINE Alu -21 288 1 1817 275 40 52 chr13 28154979 28155284 -91589614 + L1MCa LINE L1 3049 3333 -2796 1897 120 10 19 chr13 28155284 28155593 -91589305 - L1PA13 LINE L1 -7 6156 5851 1817 275 40 52 chr13 28155593 28155723 -91589175 + L1MCa LINE L1 3333 3463 -2666 313 250 0 0 chr13 28155844 28155924 -91588974 - MER116 DNA Mariner 0 80 1 1854 204 89 27 chr13 28156032 28156596 -91588302 - LTR48B LTR ERV1 -45 599 1 745 267 70 56 chr13 28156629 28157050 -91587848 + L1MCa LINE L1 3829 4257 -1872 41013 31 21 1 chr13 28157218 28163218 -91581680 - L1HS LINE L1 0 6155 32 389 216 10 0 chr13 28163224 28163321 -91581577 - L1M4 LINE L1 -3110 3036 2939 200 128 26 0 chr13 28163336 28163375 -91581523 + (TA)n Simple_repeat Simple_repeat 2 41 0 198 0 0 0 chr13 28163471 28163493 -91581405 + (TG)n Simple_repeat Simple_repeat 2 23 0 4402 220 115 5 chr13 28163494 28164946 -91579952 - L1MEc LINE L1 -1902 4313 2702 27 0 0 0 chr13 28164975 28165002 -91579896 + AT_rich Low_complexity Low_complexity 1 27 0 2131 130 3 0 chr13 28165002 28165294 -91579604 + AluSq SINE Alu 1 293 -20 554 70 97 5 chr13 28165295 28165714 -91579184 + (TA)n Simple_repeat Simple_repeat 1 457 0 2877 168 50 137 chr13 28165827 28166674 -91578224 + MER21A LTR ERV1 72 844 -87 586 229 0 29 chr13 28166719 28166894 -91578004 - L1MEc LINE L1 -3522 2693 2524 1209 227 33 55 chr13 28166898 28167259 -91577639 - MLT1A1 LTR MaLR -12 353 1 1540 191 7 28 chr13 28167331 28167613 -91577285 - AluJo SINE Alu -36 276 1 1076 299 64 35 chr13 28167622 28168550 -91576348 - L1MEc LINE L1 -3873 2523 1569 1137 121 24 0 chr13 28168575 28168741 -91576157 + AluSx SINE Alu 1 170 -142 308 133 0 0 chr13 28168741 28168786 -91576112 - Alu SINE Alu -257 45 1 599 289 39 39 chr13 28168786 28169066 -91575832 + L1ME4a LINE L1 5481 5760 -2048 327 230 53 86 chr13 28169323 28169475 -91575423 + L1ME4a LINE L1 5879 6025 -96 3565 136 11 0 chr13 28170000 28170521 -91574377 + MER1A DNA MER1_type 1 527 0 636 239 0 8 chr13 28171363 28171497 -91573401 + FLAM_A SINE Alu 1 133 0 1814 152 173 14 chr13 28171630 28171999 -91572899 - MSTA LTR MaLR 0 428 1 1323 198 57 25 chr13 28172059 28172342 -91572556 - AluSx SINE Alu -20 292 1 2056 123 0 11 chr13 28172483 28172845 -91572053 - AluSq SINE Alu 0 359 1 534 96 0 0 chr13 28172883 28172966 -91571932 - L1PB3 LINE L1 -3 6151 6069 4643 80 12 11 chr13 28173779 28174428 -91570470 - L1PA11 LINE L1 0 6174 5525 266 279 66 56 chr13 28175015 28175125 -91569773 + L1MC4a LINE L1 5612 5719 -2089 1996 150 10 0 chr13 28175125 28175596 -91569302 + AluSq SINE Alu 1 313 0 266 279 66 56 chr13 28175596 28175772 -91569126 + L1MC4a LINE L1 5719 5901 -1907 4880 44 2 2 chr13 28175772 28176363 -91568535 - LTR10C LTR ERV1 0 591 1 400 262 127 28 chr13 28176654 28177017 -91567881 + L1MC4a LINE L1 3540 3938 -2208 2715 209 28 16 chr13 28177471 28177764 -91567134 + MER82 DNA MER2_type 7 295 -358 5474 73 27 7 chr13 28177764 28178515 -91566383 + MER4E LTR ERV1 1 766 0 2715 209 28 16 chr13 28178515 28178859 -91566039 + MER82 DNA MER2_type 295 652 -1 953 284 118 34 chr13 28178929 28179305 -91565593 + L1MC4a LINE L1 3998 4341 -1805 2926 10 0 0 chr13 28179305 28179617 -91565281 + AluYb8 SINE Alu 1 312 -6 953 284 118 34 chr13 28179617 28180093 -91564805 + L1MC4a LINE L1 4341 4922 -1224 940 290 102 19 chr13 28180102 28180718 -91564180 + L1MC4a LINE L1 5215 5403 -743 34837 87 8 54 chr13 28180863 28187310 -91557588 + L1PA3 LINE L1 12 6155 0 7208 56 24 0 chr13 28187326 28188982 -91555916 + L1PA7 LINE L1 4480 6154 0 1055 117 32 0 chr13 28189085 28189239 -91555659 - L1MB2 LINE L1 -3 6168 6010 2232 99 0 0 chr13 28189244 28189527 -91555371 + AluSx SINE Alu 1 283 -29 210 128 0 0 chr13 28189529 28189568 -91555330 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1872 138 43 98 chr13 28189577 28189974 -91554924 - L1MB2 LINE L1 -153 6018 5644 1398 179 46 21 chr13 28189974 28190472 -91554426 - MER44D DNA MER2_type -1 604 14 380 145 16 0 chr13 28190473 28190535 -91554363 - L1MB2 LINE L1 -660 5640 5578 360 0 0 0 chr13 28190535 28190575 -91554323 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2256 70 0 7 chr13 28190578 28190863 -91554035 - AluY SINE Alu -28 283 1 636 342 8 4 chr13 28191182 28191439 -91553459 + MLT1I LTR MaLR 97 354 -55 1756 147 27 14 chr13 28191443 28191579 -91553319 + AluJb SINE Alu 1 134 -178 2208 115 7 0 chr13 28191579 28191884 -91553014 + AluSx SINE Alu 1 307 -5 1756 147 27 14 chr13 28191884 28192039 -91552859 + AluJb SINE Alu 134 296 -16 290 197 43 86 chr13 28193362 28193479 -91551419 + MIR SINE MIR 45 156 -106 2305 91 0 3 chr13 28194165 28194461 -91550437 - AluSc SINE Alu -14 295 1 303 131 0 33 chr13 28196869 28196930 -91547968 - L1MB5 LINE L1 -1 6173 6115 2017 94 72 0 chr13 28196931 28197207 -91547691 + AluSq SINE Alu 1 296 -17 2292 163 20 13 chr13 28197749 28198142 -91546756 - MER61B LTR ERV1 -29 396 1 223 333 62 0 chr13 28198884 28198980 -91545918 - MER5A DNA MER1_type -50 139 38 337 255 167 23 chr13 28199037 28199223 -91545675 + MIR SINE MIR 32 248 -14 1966 164 56 26 chr13 28199233 28199611 -91545287 - MLT1B LTR MaLR -1 389 1 228 197 66 49 chr13 28200823 28200884 -91544014 - MIR3 SINE MIR -9 199 138 509 243 134 99 chr13 28200973 28201368 -91543530 + MLT1H LTR MaLR 125 533 -16 1237 224 85 54 chr13 28201421 28201867 -91543031 - L1MC4 LINE L1 -692 7350 6891 1154 229 29 7 chr13 28201882 28202161 -91542737 - L1M4 LINE L1 -2376 3770 3486 244 309 34 20 chr13 28202177 28202326 -91542572 - L1M4 LINE L1 -3793 2353 2203 240 254 16 16 chr13 28202543 28202606 -91542292 + L2 LINE L2 3248 3310 -3 1163 231 107 72 chr13 28202618 28203076 -91541822 - MLT1J LTR MaLR -1 510 37 1062 253 118 31 chr13 28203277 28203552 -91541346 - LTR33 LTR ERVL -2 519 187 981 196 12 6 chr13 28203552 28203725 -91541173 - MER45A DNA AcHobo 0 178 5 1062 253 118 31 chr13 28203725 28203907 -91540991 - LTR33 LTR ERVL -334 187 22 510 268 87 0 chr13 28203927 28204065 -91540833 - L2 LINE L2 -556 2758 2609 312 261 90 77 chr13 28204086 28204320 -91540578 + MER112 DNA MER1_type 23 259 -1 320 182 13 52 chr13 28204330 28204407 -91540491 + MLT1D LTR MaLR 6 79 -426 1905 206 22 31 chr13 28204439 28204890 -91540008 + MLT1D LTR MaLR 58 504 -1 661 271 107 64 chr13 28205567 28205716 -91539182 + L1M2 LINE L1 4346 4487 -1709 1443 208 10 20 chr13 28205716 28206014 -91538884 + AluJo SINE Alu 1 295 -17 661 271 107 64 chr13 28206014 28206895 -91538003 + L1M2 LINE L1 4487 5453 -743 872 287 84 6 chr13 28206984 28207305 -91537593 + L1ME3 LINE L1 5484 5829 -333 255 61 0 0 chr13 28207326 28207359 -91537539 + (T)n Simple_repeat Simple_repeat 1 33 0 1703 126 4 0 chr13 28207369 28207599 -91537299 - AluSx SINE Alu -81 231 1 302 268 197 8 chr13 28208218 28208258 -91536640 - MER5A DNA MER1_type -14 175 144 1697 168 40 16 chr13 28208258 28208561 -91536337 + AluJo SINE Alu 3 312 0 302 268 197 8 chr13 28208561 28208647 -91536251 - MER5A DNA MER1_type -45 144 25 200 35 35 0 chr13 28209192 28209221 -91535677 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 236 307 0 20 chr13 28209384 28209485 -91535413 + MIR SINE MIR 44 142 -120 459 217 0 0 chr13 28209485 28209577 -91535321 + MER53 DNA DNA 95 186 -3 462 273 30 0 chr13 28209578 28209710 -91535188 + MIR SINE MIR 108 243 -19 225 302 98 78 chr13 28209721 28209863 -91535035 + L2 LINE L2 2554 2705 -609 2151 116 10 3 chr13 28209863 28210165 -91534733 + AluSx SINE Alu 1 304 -8 225 302 98 78 chr13 28210165 28210267 -91534631 + L2 LINE L2 2705 2803 -511 947 145 0 0 chr13 28210304 28210442 -91534456 - FRAM SINE Alu -21 155 18 269 296 96 0 chr13 28211481 28211596 -91533302 + L2 LINE L2 3137 3262 -10 326 204 133 0 chr13 28211862 28211960 -91532938 + L1ME LINE L1 5707 5817 -304 210 200 43 14 chr13 28212085 28212155 -91532743 + T-rich Low_complexity Low_complexity 2 73 0 902 170 0 0 chr13 28212160 28212319 -91532579 + L1MD3 LINE L1 7831 7989 -6 47 19 0 0 chr13 28212319 28212373 -91532525 + AT_rich Low_complexity Low_complexity 1 54 0 646 271 107 64 chr13 28212761 28212910 -91531988 + L1M2 LINE L1 4346 4487 -1709 1443 208 10 20 chr13 28212910 28213208 -91531690 + AluJo SINE Alu 1 295 -17 646 271 107 64 chr13 28213208 28214088 -91530810 + L1M2 LINE L1 4487 5453 -743 872 287 84 6 chr13 28214177 28214498 -91530400 + L1ME3 LINE L1 5484 5829 -333 264 59 0 0 chr13 28214519 28214553 -91530345 + (T)n Simple_repeat Simple_repeat 1 34 0 1641 135 4 0 chr13 28214562 28214792 -91530106 - AluSx SINE Alu -81 231 1 302 268 197 8 chr13 28215412 28215452 -91529446 - MER5A DNA MER1_type -14 175 144 1697 168 40 16 chr13 28215452 28215755 -91529143 + AluJo SINE Alu 3 312 0 302 268 197 8 chr13 28215755 28215841 -91529057 - MER5A DNA MER1_type -45 144 25 200 35 35 0 chr13 28216386 28216415 -91528483 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 236 307 0 20 chr13 28216578 28216679 -91528219 + MIR SINE MIR 44 142 -120 459 217 0 0 chr13 28216679 28216771 -91528127 + MER53 DNA DNA 95 186 -3 462 273 30 0 chr13 28216772 28216904 -91527994 + MIR SINE MIR 108 243 -19 2245 97 3 3 chr13 28217057 28217347 -91527551 + AluSx SINE Alu 1 290 -22 1177 171 222 10 chr13 28217347 28217407 -91527491 - L1MD2 LINE L1 -150 6209 6163 216 97 0 0 chr13 28217407 28217438 -91527460 + (TG)n Simple_repeat Simple_repeat 2 32 0 1177 171 222 10 chr13 28217438 28217670 -91527228 - L1MD2 LINE L1 -196 6163 5855 22 0 0 0 chr13 28218273 28218295 -91526603 + AT_rich Low_complexity Low_complexity 1 22 0 251 242 0 48 chr13 28219277 28219339 -91525559 - L2 LINE L2 -6 3307 3249 24 0 0 0 chr13 28219745 28219769 -91525129 + AT_rich Low_complexity Low_complexity 1 24 0 183 139 0 0 chr13 28219969 28220005 -91524893 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 936 161 6 36 chr13 28220239 28220407 -91524491 - FRAM SINE Alu -9 167 5 93 26 0 0 chr13 28220507 28220621 -91524277 + AT_rich Low_complexity Low_complexity 1 114 0 2465 173 32 0 chr13 28220623 28221062 -91523836 - L1MD3 LINE L1 0 7995 7543 1150 224 37 39 chr13 28221119 28221602 -91523296 + MLT1F LTR MaLR 10 542 0 403 277 74 43 chr13 28221738 28221969 -91522929 - L1ME4a LINE L1 -194 5927 5690 347 331 60 7 chr13 28221975 28222126 -91522772 + MIR SINE MIR 1 159 -103 1617 135 104 3 chr13 28222146 28222435 -91522463 - L1MB3 LINE L1 -3 6180 5863 256 111 12 49 chr13 28222542 28222623 -91522275 + (TA)n Simple_repeat Simple_repeat 1 78 0 2079 231 10 0 chr13 28222640 28223052 -91521846 + L1PBa LINE L1 1218 1633 -5230 744 198 8 8 chr13 28223023 28223149 -91521749 + L1PB3 LINE L1 1 126 -6078 * 9192 162 40 14 chr13 28223142 28225397 -91519501 + L1PB3 LINE L1 3527 5724 -487 384 119 0 0 chr13 28225397 28225456 -91519442 + (TA)n Simple_repeat Simple_repeat 2 60 0 9192 162 40 14 chr13 28225456 28225482 -91519416 + L1PB3 LINE L1 5724 5748 -463 2359 98 3 0 chr13 28225482 28225788 -91519110 - AluSq SINE Alu -6 307 1 9192 162 40 14 chr13 28225788 28226114 -91518784 + L1PB3 LINE L1 5748 6207 -4 342 233 21 98 chr13 28226129 28226322 -91518576 + L1ME4a LINE L1 5152 5329 -817 489 330 80 30 chr13 28227297 28227658 -91517240 - L2 LINE L2 -87 3226 2848 269 311 226 21 chr13 28228296 28228486 -91516412 - MIR SINE MIR -2 260 32 1651 208 81 40 chr13 28229177 28229624 -91515274 + MLT1C LTR MaLR 1 465 -2 257 157 22 45 chr13 28230806 28230895 -91514003 + GA-rich Low_complexity Low_complexity 2 88 0 925 228 29 37 chr13 28230901 28231173 -91513725 - MSTB1 LTR MaLR -155 277 8 5753 172 61 30 chr13 28231186 28231657 -91513241 + L1MC2 LINE L1 4829 5284 -1060 2031 129 0 3 chr13 28231657 28231978 -91512920 + AluSq SINE Alu 1 320 0 5753 172 61 30 chr13 28231978 28232781 -91512117 + L1MC2 LINE L1 5284 6165 -179 2230 113 7 0 chr13 28232781 28233081 -91511817 + AluSq SINE Alu 1 302 -11 5753 172 61 30 chr13 28233081 28233256 -91511642 + L1MC2 LINE L1 6165 6333 -11 491 325 106 17 chr13 28233388 28233625 -91511273 + MIR SINE MIR 4 261 -1 248 250 29 0 chr13 28234298 28234366 -91510532 + MLT1K LTR MaLR 519 588 0 1927 207 77 64 chr13 28234701 28235248 -91509650 - MLT2B3 LTR ERVL 0 554 1 472 309 64 44 chr13 28235256 28235388 -91509510 + L1ME4a LINE L1 5652 5780 -341 2979 185 43 2 chr13 28235388 28235923 -91508975 - MER41D LTR ERV1 0 557 1 472 309 64 44 chr13 28235923 28236088 -91508810 + L1ME4a LINE L1 5780 5955 -166 417 169 0 0 chr13 28236515 28236580 -91508318 + Tigger2 DNA MER2_type 3 67 -2651 2790 138 28 2 chr13 28236582 28237009 -91507889 + Tigger2 DNA MER2_type 2280 2717 -1 2017 184 8 23 chr13 28237405 28237801 -91507097 + MLT1B LTR MaLR 1 390 0 14656 125 4 29 chr13 28238020 28240447 -91504451 - L1P LINE L1 -2848 3298 932 225 318 91 11 chr13 28240714 28240889 -91504009 + MIR SINE MIR 20 206 -56 637 146 16 24 chr13 28242121 28242244 -91502654 + L1MB3 LINE L1 6061 6182 -1 2779 187 64 3 chr13 28242269 28242847 -91502051 + L1MB7 LINE L1 5572 6184 0 260 268 36 6 chr13 28243307 28243475 -91501423 + G-rich Low_complexity Low_complexity 2 174 0 900 174 47 0 chr13 28244797 28244969 -91499929 + MER20 DNA MER1_type 40 219 0 23 0 0 0 chr13 28246149 28246172 -91498726 + AT_rich Low_complexity Low_complexity 1 23 0 280 313 113 5 chr13 28246198 28246393 -91498505 - MIR SINE MIR -44 218 3 376 139 60 18 chr13 28247799 28248027 -91496871 + (TA)n Simple_repeat Simple_repeat 1 237 0 66 73 0 0 chr13 28248055 28248191 -91496707 + AT_rich Low_complexity Low_complexity 1 136 0 1728 177 17 10 chr13 28249647 28249946 -91494952 + AluJb SINE Alu 1 301 -11 1869 232 39 43 chr13 28249946 28250433 -91494465 - MLT1J LTR MaLR -18 493 9 257 262 61 33 chr13 28250969 28251111 -91493787 + LTR16A1 LTR ERVL 329 457 0 234 0 71 24 chr13 28251327 28251369 -91493529 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2273 108 3 19 chr13 28251406 28251722 -91493176 - AluSq SINE Alu -2 311 1 2007 123 0 17 chr13 28252344 28252646 -91492252 + MER46B DNA MER2_type 2 173 -63 396 0 0 0 chr13 28252646 28252690 -91492208 + (TA)n Simple_repeat Simple_repeat 2 45 0 252 111 0 0 chr13 28253870 28253915 -91490983 + (TG)n Simple_repeat Simple_repeat 1 45 0 369 217 12 6 chr13 28253941 28254107 -91490791 + (TG)n Simple_repeat Simple_repeat 2 168 0 183 100 0 0 chr13 28254149 28254179 -91490719 + (TG)n Simple_repeat Simple_repeat 2 31 0 220 282 51 0 chr13 28254704 28254782 -91490116 + MIR3 SINE MIR 124 205 -3 327 127 0 0 chr13 28255278 28255341 -91489557 + (TC)n Simple_repeat Simple_repeat 2 64 0 209 250 13 26 chr13 28255926 28256002 -91488896 - L2 LINE L2 -30 3283 3209 1855 148 3 10 chr13 28257133 28257443 -91487455 - L1MB7 LINE L1 -1 6183 5876 574 176 20 0 chr13 28257483 28257585 -91487313 + MER94 DNA DNA 2 105 -29 5295 138 33 16 chr13 28259347 28260235 -91484663 - MER4D LTR ERV1 0 903 1 2230 97 7 3 chr13 28260624 28260914 -91483984 + AluSx SINE Alu 1 291 -21 199 319 153 0 chr13 28260937 28261009 -91483889 - MER5A DNA MER1_type -70 119 37 316 241 277 0 chr13 28261788 28261925 -91482973 + MER5A DNA MER1_type 15 189 0 455 238 85 14 chr13 28263621 28263762 -91481136 + MIR SINE MIR 43 192 -62 28 50 0 17 chr13 28265679 28265700 -91479198 + AT_rich Low_complexity Low_complexity 1 21 -38 2083 113 0 10 chr13 28265700 28265992 -91478906 + AluSp SINE Alu 1 289 -24 28 50 0 17 chr13 28265992 28266030 -91478868 + AT_rich Low_complexity Low_complexity 21 59 0 797 171 0 0 chr13 28266746 28266886 -91478012 - L1MB7 LINE L1 -19 6165 6026 1967 192 109 6 chr13 28267240 28267708 -91477190 - L1MD1 LINE L1 -9 6233 5718 401 323 15 0 chr13 28269200 28269333 -91475565 + MIR SINE MIR 13 147 -115 1336 225 208 47 chr13 28271322 28271781 -91473117 + MLT1L LTR MaLR 1 557 -58 1014 167 84 47 chr13 28271781 28271996 -91472902 + MER58A DNA MER1_type 1 223 -1 1336 225 208 47 chr13 28271996 28272064 -91472834 + MLT1L LTR MaLR 557 613 -2 975 248 156 31 chr13 28272184 28272687 -91472211 - MLT1G1 LTR MaLR -23 544 5 2155 105 3 45 chr13 28272690 28273004 -91471894 + AluSx SINE Alu 3 303 -9 229 282 26 26 chr13 28273264 28273342 -91471556 - MLT1G1-int LTR MaLR -262 1109 1032 2795 103 30 9 chr13 28273792 28274229 -91470669 - L1PB2 LINE L1 -1 6150 5705 272 218 46 46 chr13 28274641 28274728 -91470170 - MLT1G1-int LTR MaLR -1648 87 1 273 167 73 177 chr13 28274728 28274765 -91470133 - MLT1G1 LTR MaLR 0 542 503 2090 141 0 10 chr13 28274765 28275064 -91469834 + AluSx SINE Alu 1 296 -16 273 167 73 177 chr13 28275064 28275218 -91469680 - MLT1G1 LTR MaLR -39 503 371 274 332 25 39 chr13 28275755 28276038 -91468860 + L2 LINE L2 1955 2233 -1081 1296 275 63 1 chr13 28276045 28276493 -91468405 - MLT1J LTR MaLR -6 505 1 416 270 220 5 chr13 28276493 28276693 -91468205 + L2 LINE L2 2230 2472 -842 305 154 152 74 chr13 28276976 28277099 -91467799 + MLT1I LTR MaLR 275 549 0 336 335 32 27 chr13 28277100 28277321 -91467577 + L2 LINE L2 2477 2698 -616 374 227 34 0 chr13 28279336 28279424 -91465474 - L2 LINE L2 0 3313 3223 1107 296 174 43 chr13 28280640 28281999 -91462899 + L2 LINE L2 1754 3307 -6 2276 119 3 0 chr13 28282176 28282487 -91462411 - AluSx SINE Alu 0 312 1 33 43 0 0 chr13 28283018 28283065 -91461833 + AT_rich Low_complexity Low_complexity 1 47 0 1776 176 0 10 chr13 28283234 28283536 -91461362 - AluJb SINE Alu -13 299 1 449 321 29 7 chr13 28283930 28284108 -91460790 - MIR SINE MIR -66 142 3 311 267 23 0 chr13 28284505 28284591 -91460307 + (CTA)n Simple_repeat Simple_repeat 2 89 0 2465 50 3 0 chr13 28284802 28285103 -91459795 - AluY SINE Alu -9 302 1 2095 99 0 36 chr13 28285836 28286172 -91458726 + AluSx SINE Alu 1 325 0 1453 154 65 91 chr13 28286840 28287087 -91457811 - MLT1B LTR MaLR -16 374 139 2331 102 0 3 chr13 28287087 28287390 -91457508 + AluSc SINE Alu 1 302 -7 1453 154 65 91 chr13 28287390 28287526 -91457372 - MLT1B LTR MaLR -251 139 1 2386 151 32 28 chr13 28287833 28288018 -91456880 + MLT1C LTR MaLR 1 184 -283 2458 39 0 86 chr13 28288018 28288355 -91456543 + AluY SINE Alu 2 309 -2 2386 151 32 28 chr13 28288355 28288634 -91456264 + MLT1C LTR MaLR 184 467 0 2038 129 0 0 chr13 28288661 28288939 -91455959 + AluSx SINE Alu 7 284 -28 315 0 0 0 chr13 28290032 28290067 -91454831 + (TG)n Simple_repeat Simple_repeat 2 36 0 1485 181 67 0 chr13 28290275 28290529 -91454369 + AluJo SINE Alu 25 295 -17 2255 81 0 40 chr13 28290551 28290874 -91454024 + AluY SINE Alu 1 310 -1 2188 112 13 3 chr13 28290887 28291190 -91453708 + AluSq SINE Alu 1 306 -7 270 357 105 12 chr13 28291982 28292153 -91452745 - MIR3 SINE MIR -7 201 15 2392 101 3 0 chr13 28292536 28292844 -91452054 - AluSq SINE Alu -4 309 1 261 366 71 0 chr13 28293547 28293659 -91451239 + L2 LINE L2 3151 3270 -2 1540 235 123 64 chr13 28294267 28294733 -91450165 + HAL1b LINE L1 94 531 -817 1697 129 4 0 chr13 28294733 28294974 -91449924 + AluSg/x SINE Alu 68 309 -1 1540 235 123 64 chr13 28294974 28295159 -91449739 + HAL1b LINE L1 531 704 -644 2378 94 0 0 chr13 28295159 28295457 -91449441 - AluSq SINE Alu -14 299 2 1540 235 123 64 chr13 28295457 28295753 -91449145 + HAL1b LINE L1 704 1098 -250 880 118 0 22 chr13 28295880 28296016 -91448882 + FLAM_C SINE Alu 1 133 0 24 32 0 0 chr13 28296090 28296121 -91448777 + AT_rich Low_complexity Low_complexity 1 31 0 1912 156 29 133 chr13 28296498 28296548 -91448350 - L1MB3 LINE L1 0 6183 6129 2033 133 3 7 chr13 28296548 28296841 -91448057 - AluJo SINE Alu -20 292 1 1912 156 29 133 chr13 28296841 28297347 -91447551 - L1MB3 LINE L1 -54 6129 5685 343 325 44 109 chr13 28297348 28297622 -91447276 + L2 LINE L2 2995 3250 -22 1390 152 108 54 chr13 28297711 28297988 -91446910 + AluJb SINE Alu 1 292 -20 1163 252 130 21 chr13 28298141 28298610 -91446288 - MLT2B1 LTR ERVL 0 520 1 1520 102 3 115 chr13 28298685 28299060 -91445838 - MER4A LTR ERV1 0 664 261 521 165 21 10 chr13 28299060 28299157 -91445741 - MER4A LTR ERV1 -566 98 1 2322 112 0 6 chr13 28299314 28299627 -91445271 + AluSx SINE Alu 1 311 -1 1037 286 164 37 chr13 28300118 28300684 -91444214 - L3 LINE CR1 -17 1560 923 1110 230 66 77 chr13 28300848 28301385 -91443513 + L1MEc LINE L1 1732 2273 -4123 2081 124 24 0 chr13 28301385 28301676 -91443222 + AluSx SINE Alu 1 298 -14 1110 230 66 77 chr13 28301676 28301857 -91443041 + L1MEc LINE L1 2273 2444 -3952 2627 176 75 44 chr13 28301857 28302562 -91442336 - LTR8A LTR ERV1 0 727 1 1110 230 66 77 chr13 28302562 28302598 -91442300 + L1MEc LINE L1 2444 2479 -3917 2231 190 6 46 chr13 28302612 28303090 -91441808 + MER66B LTR ERV1 28 486 0 1232 243 54 40 chr13 28303111 28303133 -91441765 + L1MEc LINE L1 2470 2490 -3725 2459 79 3 0 chr13 28303133 28303436 -91441462 + AluSp SINE Alu 1 304 -9 1232 243 54 40 chr13 28303436 28303857 -91441041 + L1MEc LINE L1 2490 2919 -3296 2238 51 0 44 chr13 28303862 28304156 -91440742 + AluY SINE Alu 1 281 -30 457 252 103 70 chr13 28304197 28304642 -91440256 + L1MC4 LINE L1 7576 8035 -7 283 237 0 0 chr13 28304813 28304872 -91440026 + L2 LINE L2 3197 3255 -17 1643 262 50 45 chr13 28304922 28304962 -91439936 - L1ME3 LINE L1 -20 6142 6104 1934 142 139 13 chr13 28304962 28305301 -91439597 + MSTA LTR MaLR 1 394 -34 2383 99 0 0 chr13 28305301 28305603 -91439295 - AluSx SINE Alu -10 302 1 1934 142 139 13 chr13 28305603 28305643 -91439255 + MSTA LTR MaLR 394 428 0 1643 262 50 45 chr13 28305643 28306315 -91438583 - L1ME3 LINE L1 -58 6104 5426 390 244 144 35 chr13 28306317 28306636 -91438262 + L1ME4a LINE L1 5767 6120 -1 216 139 28 7 chr13 28306705 28306795 -91438103 + MIR SINE MIR 108 250 -12 704 239 56 36 chr13 28306827 28307078 -91437820 - L2 LINE L2 -2920 394 139 348 186 34 127 chr13 28307355 28307473 -91437425 - MER5B DNA MER1_type -68 110 4 570 272 90 34 chr13 28307907 28307959 -91436939 - MLT1L LTR MaLR -90 525 477 5681 96 24 32 chr13 28307959 28308876 -91436022 + L1PA13 LINE L1 4572 5471 -692 1600 160 44 0 chr13 28308876 28309151 -91435747 + AluJb SINE Alu 1 287 -25 5681 96 24 32 chr13 28309151 28309837 -91435061 + L1PA13 LINE L1 5471 6161 -2 570 272 90 34 chr13 28309837 28310107 -91434791 - MLT1L LTR MaLR -138 477 185 22 0 0 0 chr13 28311034 28311056 -91433842 + AT_rich Low_complexity Low_complexity 1 22 0 272 275 133 8 chr13 28311060 28311180 -91433718 - MIR SINE MIR -87 175 41 616 258 51 32 chr13 28317068 28317285 -91427613 + MIR SINE MIR 29 249 -13 234 267 182 79 chr13 28317600 28317765 -91427133 - MER5A DNA MER1_type -1 188 7 588 296 61 53 chr13 28318057 28318321 -91426577 - L3 LINE CR1 -99 1478 1213 409 254 104 8 chr13 28319163 28319297 -91425601 + L2 LINE L2 3167 3313 0 1027 246 31 31 chr13 28319537 28319793 -91425105 - MIR SINE MIR 0 262 7 25 51 0 0 chr13 28322138 28322177 -91422721 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 28323451 28323472 -91421426 + AT_rich Low_complexity Low_complexity 1 21 0 2098 126 0 3 chr13 28323754 28324047 -91420851 - AluSx SINE Alu -20 292 1 2005 170 0 0 chr13 28324380 28324692 -91420206 - AluJo SINE Alu 0 312 1 2484 91 0 0 chr13 28324720 28325029 -91419869 + AluSc SINE Alu 1 309 0 21 36 0 0 chr13 28325812 28325840 -91419058 + AT_rich Low_complexity Low_complexity 1 28 0 2187 114 0 3 chr13 28325907 28326197 -91418701 - AluSx SINE Alu -23 289 1 28 0 0 0 chr13 28326469 28326497 -91418401 + AT_rich Low_complexity Low_complexity 1 28 0 388 259 19 37 chr13 28327724 28327886 -91417012 + L1MC4 LINE L1 5743 5901 -1907 400 213 173 20 chr13 28327914 28328064 -91416834 + MLT1B LTR MaLR 1 173 -217 319 237 0 13 chr13 28328182 28328205 -91416693 + L1MC4 LINE L1 6624 6646 -1396 2584 50 0 0 chr13 28328205 28328503 -91416395 + AluY SINE Alu 3 300 -11 319 237 0 13 chr13 28328503 28328555 -91416343 + L1MC4 LINE L1 6646 6698 -1344 2118 105 0 3 chr13 28329028 28329334 -91415564 + AluSq SINE Alu 1 305 0 300 212 235 15 chr13 28329412 28329544 -91415354 + L1ME4a LINE L1 5950 6110 -11 823 133 35 14 chr13 28329694 28329837 -91415061 + L1MC1 LINE L1 6177 6322 -11 1701 159 3 59 chr13 28329838 28330159 -91414739 + AluJo SINE Alu 1 303 -9 183 139 0 0 chr13 28330393 28330429 -91414469 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr13 28330629 28330653 -91414245 + AT_rich Low_complexity Low_complexity 1 24 0 248 242 0 48 chr13 28331059 28331121 -91413777 + L2 LINE L2 3249 3307 -6 22 0 0 0 chr13 28332103 28332125 -91412773 + AT_rich Low_complexity Low_complexity 1 22 0 1723 168 152 39 chr13 28332728 28332960 -91411938 + L1MD2 LINE L1 5855 6059 -300 234 91 0 0 chr13 28332960 28332993 -91411905 + (CA)n Simple_repeat Simple_repeat 2 34 0 1723 168 152 39 chr13 28332993 28333053 -91411845 + L1MD2 LINE L1 6059 6111 -248 2252 103 0 0 chr13 28333053 28333343 -91411555 - AluSx SINE Alu -22 290 1 1723 168 152 39 chr13 28333343 28333483 -91411415 + L1MD2 LINE L1 6111 6337 -22 22 35 0 0 chr13 28333636 28333665 -91411233 + AT_rich Low_complexity Low_complexity 1 29 0 357 287 116 31 chr13 28334308 28334534 -91410364 + L2 LINE L2 2755 3002 -270 973 173 9 37 chr13 28336939 28336974 -91407924 + L1MB3 LINE L1 5975 6009 -174 411 21 0 0 chr13 28336974 28337022 -91407876 + (TG)n Simple_repeat Simple_repeat 2 49 0 2161 109 3 0 chr13 28337022 28337305 -91407593 - AluSp SINE Alu -28 285 2 973 173 9 37 chr13 28337305 28337482 -91407416 + L1MB3 LINE L1 6007 6182 -1 265 335 93 14 chr13 28338420 28338635 -91406263 + L2 LINE L2 1792 2023 -1291 338 270 36 9 chr13 28338705 28338816 -91406082 - MER103 DNA DNA -9 157 44 452 267 124 0 chr13 28339418 28339579 -91405319 - MIR SINE MIR -4 258 78 505 218 57 8 chr13 28339808 28339932 -91404966 - MER94 DNA DNA -4 130 1 180 0 0 0 chr13 28340518 28340538 -91404360 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 26 30 0 0 chr13 28340831 28340864 -91404034 + AT_rich Low_complexity Low_complexity 1 33 0 2034 146 3 7 chr13 28341952 28342253 -91402645 - AluSx SINE Alu -12 300 1 195 42 0 0 chr13 28342459 28342483 -91402415 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr13 28343466 28343495 -91401403 + AT_rich Low_complexity Low_complexity 1 29 0 243 243 0 39 chr13 28343564 28343667 -91401231 + (TAA)n Simple_repeat Simple_repeat 1 99 0 258 237 51 0 chr13 28343687 28343746 -91401152 - MIR SINE MIR -34 228 167 1360 202 0 45 chr13 28343753 28344040 -91400858 + AluJo SINE Alu 9 282 -30 35 63 0 0 chr13 28344340 28344403 -91400495 + AT_rich Low_complexity Low_complexity 1 63 0 683 154 0 8 chr13 28344734 28344857 -91400041 + L1ME4a LINE L1 5369 5490 -688 28 0 0 0 chr13 28345159 28345187 -91399711 + AT_rich Low_complexity Low_complexity 1 28 0 2141 105 3 10 chr13 28346138 28346433 -91398465 - AluSx SINE Alu -19 293 1 369 250 33 11 chr13 28347014 28347106 -91397792 - MIR SINE MIR -81 181 88 964 146 4 153 chr13 28347160 28347414 -91397484 - MER20 DNA MER1_type -1 218 3 264 170 198 28 chr13 28347661 28347767 -91397131 + MARNA DNA Mariner 21 144 -442 399 285 134 36 chr13 28347879 28348132 -91396766 + MARNA DNA Mariner 210 487 -99 274 284 18 18 chr13 28348513 28348622 -91396276 + L1ME4a LINE L1 5560 5668 -453 6959 236 53 44 chr13 28348878 28352879 -91392019 + L1PA12 LINE L1 856 4900 -2684 259 290 43 0 chr13 28352873 28352966 -91391932 + L1ME4a LINE L1 5999 6095 -26 * 252 248 2 83 chr13 28353486 28353595 -91391303 - MER5B DNA MER1_type -26 163 59 2017 143 3 3 chr13 28354002 28354309 -91390589 + AluSx SINE Alu 1 307 -5 297 311 46 26 chr13 28354510 28354661 -91390237 + MER117 DNA MER1_type 7 160 -37 402 283 17 68 chr13 28355363 28355540 -91389358 + MIR3 SINE MIR 32 199 -9 235 364 0 11 chr13 28356560 28356648 -91388250 + MIR SINE MIR 43 129 -133 1404 319 151 33 chr13 28357143 28357821 -91387077 - L2 LINE L2 -2 3270 2674 888 186 77 97 chr13 28357821 28358171 -91386727 + MER2 DNA MER2_type 2 344 0 1404 319 151 33 chr13 28358171 28358709 -91386189 - L2 LINE L2 -598 2674 1895 494 351 14 28 chr13 28359164 28359449 -91385449 + MLT1J LTR MaLR 231 511 0 252 293 37 0 chr13 28359536 28359618 -91385280 + MLT1J LTR MaLR 119 203 -308 521 218 103 111 chr13 28359730 28360001 -91384897 + MLT1L LTR MaLR 347 615 0 257 310 134 14 chr13 28360502 28360644 -91384254 + MER5B DNA MER1_type 8 166 -12 355 239 0 0 chr13 28360663 28360675 -91384223 + MER3 DNA MER1_type 37 48 -161 275 196 22 87 chr13 28360675 28360767 -91384131 - MER3 DNA MER1_type -1 208 123 * 1590 145 110 3 chr13 28360758 28361103 -91383795 + MER3 DNA MER1_type 2242 2623 0 270 263 79 13 chr13 28361585 28361661 -91383237 - MER2 DNA MER2_type -1 344 264 886 157 91 30 chr13 28361694 28361892 -91383006 - MER2 DNA MER2_type -135 210 1 33 73 0 0 chr13 28362523 28362591 -91382307 + AT_rich Low_complexity Low_complexity 1 68 0 181 290 69 99 chr13 28362653 28362784 -91382114 - L2 LINE L2 -6 3266 3140 25 31 0 0 chr13 28364303 28364335 -91380563 + AT_rich Low_complexity Low_complexity 1 32 0 1910 170 13 0 chr13 28364584 28364890 -91380008 + AluJo SINE Alu 1 310 -2 893 177 74 37 chr13 28367027 28367298 -91377600 + L1MC5 LINE L1 7633 7913 -48 2312 95 3 7 chr13 28368277 28368583 -91376315 - AluSx SINE Alu -7 305 1 809 231 113 5 chr13 28369039 28369242 -91375656 + MIR SINE MIR 26 250 -12 743 200 0 0 chr13 28370682 28370812 -91374086 - FRAM SINE Alu -49 127 1 187 51 0 51 chr13 28371022 28371061 -91373837 + (CA)n Simple_repeat Simple_repeat 2 38 0 2290 73 10 3 chr13 28371246 28371549 -91373349 - AluSp SINE Alu -8 305 1 41844 56 7 3 chr13 28371823 28377945 -91366953 - L1PA5 LINE L1 -4 6150 1 26 30 0 0 chr13 28377950 28377983 -91366915 + AT_rich Low_complexity Low_complexity 1 33 0 2516 60 7 0 chr13 28379416 28379718 -91365180 + AluSp SINE Alu 2 305 -8 634 231 67 31 chr13 28379993 28380188 -91364710 - MER3 DNA MER1_type -1 208 7 276 259 118 67 chr13 28380200 28380335 -91364563 - L2 LINE L2 -8 3305 3164 1592 61 0 0 chr13 28380437 28380634 -91364264 - AluY SINE Alu -9 302 106 1222 290 19 16 chr13 28381648 28382014 -91362884 + L2 LINE L2 2947 3313 0 2157 80 21 10 chr13 28382020 28382308 -91362590 + AluSg SINE Alu 8 298 -12 24 32 0 0 chr13 28382475 28382506 -91362392 + AT_rich Low_complexity Low_complexity 1 31 0 21 100 0 0 chr13 28382703 28382773 -91362125 + AT_rich Low_complexity Low_complexity 1 70 0 394 266 68 79 chr13 28382920 28383097 -91361801 + MIR SINE MIR 69 243 -19 370 305 188 13 chr13 28383101 28383183 -91361715 - L2 LINE L2 0 3313 3247 858 36 0 0 chr13 28383183 28383293 -91361605 + (TA)n Simple_repeat Simple_repeat 2 111 0 370 305 188 13 chr13 28383293 28383449 -91361449 - L2 LINE L2 -66 3247 3033 2241 92 0 64 chr13 28383561 28383889 -91361009 + AluSc SINE Alu 1 307 -2 686 321 194 28 chr13 28383899 28384372 -91360526 - L2 LINE L2 -362 2952 2401 330 26 0 0 chr13 28384451 28384490 -91360408 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 339 303 90 90 chr13 28384546 28384968 -91359930 + L1ME LINE L1 37 458 -5612 501 241 161 54 chr13 28385271 28385698 -91359200 + L1ME LINE L1 488 1134 -4946 1698 138 0 0 chr13 28385771 28386010 -91358888 + AluSx SINE Alu 17 255 -57 270 0 0 0 chr13 28386023 28386053 -91358845 + (TAA)n Simple_repeat Simple_repeat 2 31 0 445 246 163 49 chr13 28386136 28387235 -91357663 + L1ME LINE L1 1249 2498 -3582 698 243 181 74 chr13 28387340 28387613 -91357285 + L1ME LINE L1 2668 2911 -3169 608 198 0 32 chr13 28387613 28387739 -91357159 + FLAM_A SINE Alu 1 122 -11 698 243 181 74 chr13 28387739 28387753 -91357145 + L1ME LINE L1 2911 2922 -3158 2445 69 0 0 chr13 28387753 28388057 -91356841 + AluY SINE Alu 1 304 -7 698 243 181 74 chr13 28388057 28388687 -91356211 + L1ME LINE L1 2922 3684 -2396 338 282 117 6 chr13 28388806 28388969 -91355929 + L1ME LINE L1 5544 5724 -331 400 73 0 0 chr13 28389032 28389087 -91355811 - MER57A LTR ERV1 -348 55 1 225 0 0 0 chr13 28389368 28389393 -91355505 + (TC)n Simple_repeat Simple_repeat 2 26 0 262 277 0 24 chr13 28389673 28389756 -91355142 + MER117 DNA MER1_type 11 91 -106 211 377 0 0 chr13 28389846 28389923 -91354975 + MIR SINE MIR 45 121 -87 406 268 136 45 chr13 28389929 28390238 -91354660 + MER90 LTR ERV1 1 281 -333 2321 88 0 52 chr13 28390238 28390566 -91354332 - AluSx SINE Alu -1 311 1 406 268 136 45 chr13 28390566 28390690 -91354208 + MER90 LTR ERV1 281 612 -2 294 303 115 8 chr13 28390691 28390813 -91354085 + MIR SINE MIR 122 256 -6 802 215 124 51 chr13 28391458 28392116 -91352782 - Charlie7 DNA MER1_type -239 2373 1570 320 250 97 34 chr13 28392242 28392418 -91352480 - Charlie7 DNA MER1_type -2360 252 66 21 71 0 0 chr13 28394274 28394316 -91350582 + AT_rich Low_complexity Low_complexity 1 42 0 2304 78 0 42 chr13 28396269 28396577 -91348321 + AluSq SINE Alu 1 295 -18 208 83 42 42 chr13 28396577 28396625 -91348273 + (TTAAA)n Simple_repeat Simple_repeat 1 48 0 250 250 25 12 chr13 28398431 28398511 -91346387 + C-rich Low_complexity Low_complexity 3 83 0 195 42 0 0 chr13 28398686 28398710 -91346188 + (CGG)n Simple_repeat Simple_repeat 2 25 0 217 120 320 0 chr13 28399866 28399916 -91344982 - L2 LINE L2 0 3272 3207 216 262 0 0 chr13 28399887 28399929 -91344969 - L2 LINE L2 -37 3276 3235 * 193 231 0 39 chr13 28400017 28400069 -91344829 - L2 LINE L2 -73 3199 3150 468 189 315 0 chr13 28400980 28401091 -91343807 + MIR3 SINE MIR 35 180 -28 478 156 30 171 chr13 28401162 28401309 -91343589 + L1MB7 LINE L1 6008 6121 -57 2022 183 58 5 chr13 28401309 28401756 -91343142 - L1MB3 LINE L1 0 6183 5713 478 156 30 171 chr13 28401756 28401807 -91343091 + L1MB7 LINE L1 6121 6178 0 2233 108 0 10 chr13 28402355 28402662 -91342236 + AluSq SINE Alu 2 305 -8 1461 77 5 0 chr13 28402984 28403192 -91341706 - L1MA7 LINE L1 -367 5933 5725 1256 173 24 60 chr13 28403193 28403528 -91341370 + L1MA7 LINE L1 5966 6288 -3 427 293 71 0 chr13 28403540 28403680 -91341218 + MER5B DNA MER1_type 29 178 0 296 300 35 35 chr13 28404208 28404378 -91340520 - L2 LINE L2 -451 2863 2694 297 289 0 12 chr13 28404453 28404536 -91340362 - MIR3 SINE MIR -3 205 124 189 0 0 0 chr13 28404780 28404801 -91340097 + (TG)n Simple_repeat Simple_repeat 2 22 0 2267 75 4 0 chr13 28405669 28405949 -91338949 - AluSp SINE Alu -12 301 21 247 323 52 10 chr13 28406471 28406567 -91338331 + L2 LINE L2 3134 3233 -39 239 248 29 105 chr13 28406993 28407098 -91337800 - MIR3 SINE MIR -3 205 109 2314 104 0 3 chr13 28407350 28407648 -91337250 - AluSx SINE Alu -15 297 1 438 202 0 11 chr13 28407690 28407784 -91337114 - FLAM_A SINE Alu -14 128 36 22 35 0 0 chr13 28408057 28408086 -91336812 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 28408496 28408524 -91336374 + AT_rich Low_complexity Low_complexity 1 28 0 283 267 0 0 chr13 28408566 28408626 -91336272 + MIR SINE MIR 47 106 -156 1715 147 12 0 chr13 28408662 28408914 -91335984 + AluJo SINE Alu 9 263 -49 252 0 0 0 chr13 28408936 28408964 -91335934 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 294 268 62 9 chr13 28409563 28409675 -91335223 + MER94 DNA DNA 1 118 -16 377 313 69 8 chr13 28409849 28409980 -91334918 + MER91C DNA MER1_type 1 139 -1 588 268 64 32 chr13 28410145 28410365 -91334533 + MIR SINE MIR 26 252 -10 239 246 33 0 chr13 28410523 28410584 -91334314 + CT-rich Low_complexity Low_complexity 2 64 0 1823 183 0 7 chr13 28411323 28411623 -91333275 + AluJo SINE Alu 1 298 -14 625 277 113 26 chr13 28411776 28412007 -91332891 - MIR SINE MIR -6 256 6 1253 115 9 71 chr13 28412219 28412304 -91332594 - 7SLRNA srpRNA srpRNA -107 213 124 2087 103 68 0 chr13 28412304 28412596 -91332302 - AluSx SINE Alu 0 312 1 1253 115 9 71 chr13 28412596 28412736 -91332162 - 7SLRNA srpRNA srpRNA -196 124 2 283 297 108 9 chr13 28412737 28412848 -91332050 + L2 LINE L2 2938 3059 -213 574 297 48 52 chr13 28412982 28413292 -91331606 - L2 LINE L2 -49 3264 2956 188 0 74 0 chr13 28415186 28415213 -91329685 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 220 274 189 11 chr13 28415350 28415445 -91329453 - MIR SINE MIR -66 196 85 1756 186 0 0 chr13 28416042 28416343 -91328555 + AluJb SINE Alu 1 301 -11 1251 175 0 27 chr13 28417389 28417635 -91327263 + AluJb SINE Alu 82 312 0 483 278 73 92 chr13 28417908 28418225 -91326673 - L2 LINE L2 -44 3269 2959 1002 345 24 3 chr13 28418493 28418870 -91326028 - L2 LINE L2 -343 2971 2587 630 192 69 9 chr13 28418873 28419102 -91325796 + L1MA9 LINE L1 5946 6284 -28 8405 98 54 4 chr13 28419105 28420329 -91324569 + HSMAR1 DNA Mariner 3 1287 0 186 258 43 43 chr13 28420345 28420438 -91324460 - L2 LINE L2 -711 2603 2511 350 281 67 7 chr13 28421719 28421854 -91323044 - L1ME4a LINE L1 -203 5918 5776 2104 108 0 14 chr13 28422031 28422345 -91322553 + AluSx SINE Alu 1 310 0 1876 107 0 4 chr13 28424876 28425120 -91319778 + AluSp SINE Alu 1 243 -70 928 270 101 64 chr13 28427670 28428028 -91316870 - MLT1J LTR MaLR -6 505 123 2326 110 0 0 chr13 28428028 28428327 -91316571 + AluSg SINE Alu 1 299 -11 928 270 101 64 chr13 28428327 28428453 -91316445 - MLT1J LTR MaLR -388 123 3 450 274 126 9 chr13 28429716 28430061 -91314837 + MLT1J LTR MaLR 100 509 -2 1356 255 38 14 chr13 28430164 28430588 -91314310 + MER57B LTR ERV1 1 434 0 24 67 0 0 chr13 28430850 28430895 -91314003 + AT_rich Low_complexity Low_complexity 1 45 0 866 166 114 31 chr13 28431622 28431738 -91313160 + MER3 DNA MER1_type 1 106 -103 207 0 0 0 chr13 28431738 28431761 -91313137 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 866 166 114 31 chr13 28431761 28431772 -91313126 + MER3 DNA MER1_type 106 115 -94 2077 107 0 10 chr13 28431772 28432061 -91312837 - AluSx SINE Alu -26 286 1 866 166 114 31 chr13 28432061 28432125 -91312773 + MER3 DNA MER1_type 115 209 0 1588 159 39 26 chr13 28433851 28434159 -91310739 + AluJb SINE Alu 1 312 0 2622 172 32 10 chr13 28434173 28434688 -91310210 + MER41B LTR ERV1 90 474 -12 303 264 141 68 chr13 28434715 28434878 -91310020 + MER5A DNA MER1_type 9 183 -6 344 248 124 0 chr13 28435049 28435170 -91309728 + MIR SINE MIR 119 254 -8 212 347 0 0 chr13 28435195 28435267 -91309631 + MIR SINE MIR 83 154 -108 2085 148 7 0 chr13 28437619 28437952 -91306946 + AluJo SINE Alu 1 335 0 1764 189 0 3 chr13 28438562 28438883 -91306015 - AluJb SINE Alu 0 320 1 269 282 145 84 chr13 28438958 28439185 -91305713 + LTR67 LTR ERVL 2 242 -315 313 309 8 24 chr13 28439265 28439388 -91305510 + LTR67 LTR ERVL 423 543 -14 376 139 60 18 chr13 28441138 28441366 -91303532 + (TA)n Simple_repeat Simple_repeat 1 237 0 66 73 0 0 chr13 28441394 28441530 -91303368 + AT_rich Low_complexity Low_complexity 1 136 0 1646 148 3 99 chr13 28442986 28443330 -91301568 + AluJb SINE Alu 1 311 -1 594 220 25 0 chr13 28443363 28443481 -91301417 - FLAM_A SINE Alu -12 121 1 3739 188 71 48 chr13 28443524 28444059 -91300839 + MER21B LTR ERV1 5 567 -296 2069 118 7 17 chr13 28444059 28444348 -91300550 - AluSx SINE Alu -26 286 1 3739 188 71 48 chr13 28444348 28444640 -91300258 + MER21B LTR ERV1 567 851 -12 374 111 22 89 chr13 28444646 28444736 -91300162 - L1ME3 LINE L1 -24 6138 6055 244 91 0 0 chr13 28444737 28444770 -91300128 - MER3 DNA MER1_type -161 48 16 663 209 218 42 chr13 28444784 28445091 -91299807 - L1ME3 LINE L1 -156 6006 5646 2061 188 23 5 chr13 28445091 28445480 -91299418 - MER65C LTR ERV1 0 461 66 351 239 0 0 chr13 28445480 28445551 -91299347 - L1ME3 LINE L1 -528 5636 5566 738 189 29 17 chr13 28445606 28445781 -91299117 - MER3 DNA MER1_type -79 130 1 559 266 57 13 chr13 28445796 28445954 -91298944 - MER112 DNA MER1_type -73 187 23 615 85 11 43 chr13 28447132 28447226 -91297672 + AluY SINE Alu 205 295 -16 754 224 0 0 chr13 28447242 28447389 -91297509 - FAM SINE Alu -10 175 29 6584 127 13 35 chr13 28447491 28449292 -91295606 - L1MA8 LINE L1 0 6291 4541 524 264 39 11 chr13 28449700 28449882 -91295016 - MER117 DNA MER1_type -10 187 1 565 278 45 29 chr13 28450068 28450293 -91294605 + MIR SINE MIR 18 254 -8 1559 197 10 27 chr13 28451262 28451562 -91293336 - AluJo SINE Alu -13 299 5 29 0 0 0 chr13 28451581 28451610 -91293288 + AT_rich Low_complexity Low_complexity 1 29 0 740 165 8 8 chr13 28451611 28451732 -91293166 - FLAM_C SINE Alu -11 122 2 829 225 16 16 chr13 28451792 28451979 -91292919 - MER5A DNA MER1_type -2 187 1 252 139 0 111 chr13 28451997 28452069 -91292829 + HERVL66 LTR ERVL 2277 2340 -1989 244 231 144 10 chr13 28452703 28452807 -91292091 - L1ME4a LINE L1 -4 6117 6000 306 0 0 0 chr13 28452822 28452856 -91292042 + (TA)n Simple_repeat Simple_repeat 2 35 0 2372 83 7 3 chr13 28452856 28453158 -91291740 - AluSc SINE Alu -6 303 1 33 43 0 0 chr13 28453520 28453567 -91291331 + AT_rich Low_complexity Low_complexity 1 47 0 2471 105 0 0 chr13 28454281 28454594 -91290304 - AluSq SINE Alu 0 313 1 24 0 0 0 chr13 28454596 28454620 -91290278 + AT_rich Low_complexity Low_complexity 1 24 0 2066 143 46 108 chr13 28454854 28455352 -91289546 - MLT1C LTR MaLR 0 467 1 2258 129 6 0 chr13 28455373 28455705 -91289193 + MER47A DNA MER2_type 33 366 0 185 328 90 16 chr13 28458410 28458532 -91286366 - MIR SINE MIR -112 150 20 695 204 138 108 chr13 28460561 28460830 -91284068 + L1ME1 LINE L1 5880 6144 -22 274 338 26 19 chr13 28460950 28461104 -91283794 - L2 LINE L2 -214 3058 2904 457 184 87 0 chr13 28461221 28461324 -91283574 - L1MB3 LINE L1 -7 6176 6065 1716 146 0 15 chr13 28461324 28461585 -91283313 - AluSc SINE Alu -11 298 42 492 118 0 0 chr13 28461585 28461653 -91283245 - AluS SINE Alu -240 73 6 1183 153 23 23 chr13 28461659 28461875 -91283023 - L1MB4 LINE L1 -106 6074 5859 560 214 224 9 chr13 28462584 28462732 -91282166 - MIR SINE MIR 0 262 147 1334 198 183 23 chr13 28462732 28463126 -91281772 - MSTB2 LTR MaLR 0 457 1 560 214 224 9 chr13 28463126 28463187 -91281711 - MIR SINE MIR -115 147 8 293 288 115 21 chr13 28463394 28463585 -91281313 - L2 LINE L2 -1 3312 3104 203 167 0 0 chr13 28463669 28463705 -91281193 + (TG)n Simple_repeat Simple_repeat 1 36 0 2095 172 46 0 chr13 28463809 28464176 -91280722 + MLT1B LTR MaLR 1 384 -6 309 157 0 0 chr13 28464348 28464399 -91280499 - L2 LINE L2 -1 3271 3221 1947 198 77 25 chr13 28465006 28465486 -91279412 + MLT1D LTR MaLR 1 505 0 413 243 81 7 chr13 28465600 28465736 -91279162 + L2 LINE L2 3168 3313 0 2039 151 0 0 chr13 28467681 28467973 -91276925 + AluJo SINE Alu 1 292 -20 355 300 53 24 chr13 28469748 28469918 -91274980 + MIR SINE MIR 67 241 -21 2247 102 0 0 chr13 28469958 28470252 -91274646 + AluY SINE Alu 1 294 -17 285 304 114 19 chr13 28470355 28470513 -91274385 - MER5B DNA MER1_type -5 173 1 239 319 177 0 chr13 28471747 28471888 -91273010 - MIR3 SINE MIR -25 183 18 327 127 0 0 chr13 28473122 28473185 -91271713 + (GA)n Simple_repeat Simple_repeat 2 64 0 220 282 51 0 chr13 28473681 28473759 -91271139 - MIR3 SINE MIR -3 205 124 183 100 0 0 chr13 28474284 28474314 -91270584 + (CA)n Simple_repeat Simple_repeat 2 31 0 369 217 12 6 chr13 28474356 28474522 -91270376 + (CA)n Simple_repeat Simple_repeat 2 168 0 252 111 0 0 chr13 28474548 28474593 -91270305 + (CA)n Simple_repeat Simple_repeat 1 45 0 396 0 0 0 chr13 28475773 28475817 -91269081 + (TA)n Simple_repeat Simple_repeat 2 45 0 2007 123 0 17 chr13 28475817 28476119 -91268779 - MER46B DNA MER2_type -63 173 2 2273 108 3 19 chr13 28476741 28477057 -91267841 + AluSq SINE Alu 1 311 -2 234 0 71 24 chr13 28477094 28477136 -91267762 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 257 262 61 33 chr13 28477352 28477494 -91267404 - LTR16A1 LTR ERVL 0 457 329 1916 222 35 65 chr13 28478030 28478517 -91266381 + MLT1J LTR MaLR 9 481 -30 1773 171 17 10 chr13 28478517 28478816 -91266082 - AluJb SINE Alu -11 301 1 1916 222 35 65 chr13 28478816 28478847 -91266051 + MLT1J LTR MaLR 481 511 0 2425 80 0 3 chr13 28478911 28479211 -91265687 + AluY SINE Alu 1 299 -12 14308 134 49 9 chr13 28479284 28481608 -91263290 - Tigger1 DNA MER2_type 0 2418 3 209 340 21 0 chr13 28481620 28481714 -91263184 - MIR SINE MIR -27 235 140 238 358 24 0 chr13 28481723 28481846 -91263052 + L2 LINE L2 2626 2751 -563 1072 275 66 31 chr13 28481852 28482398 -91262500 - MLT1F LTR MaLR -17 525 10 252 194 75 43 chr13 28484823 28484916 -91259982 - L1MC5 LINE L1 -92 7869 7774 1956 158 12 26 chr13 28485507 28485849 -91259049 + MER1B DNA MER1_type 1 337 0 1058 165 62 22 chr13 28486768 28486992 -91257906 - MIR SINE MIR -1 261 29 2074 125 0 0 chr13 28488451 28488730 -91256168 + AluSq SINE Alu 1 279 -34 396 0 0 0 chr13 28488730 28488774 -91256124 + (CA)n Simple_repeat Simple_repeat 2 45 0 187 321 37 68 chr13 28490015 28490205 -91254693 + L3 LINE CR1 1084 1267 -310 2000 146 3 0 chr13 28492487 28492781 -91252117 - AluJb SINE Alu -17 295 1 2582 74 0 0 chr13 28492957 28493269 -91251629 + AluSx SINE Alu 1 312 0 296 276 61 10 chr13 28494312 28494410 -91250488 + MIR3 SINE MIR 85 187 -21 190 272 25 37 chr13 28494524 28494605 -91250293 + L2 LINE L2 2970 3049 -223 247 275 55 11 chr13 28494770 28494861 -91250037 + LTR48B LTR ERV1 6 100 -544 * 1206 225 82 64 chr13 28494835 28495029 -91249869 + MER39 LTR ERV1 260 449 -258 2118 138 0 0 chr13 28495029 28495320 -91249578 + AluSx SINE Alu 11 301 -11 1206 225 82 64 chr13 28495320 28495565 -91249333 + MER39 LTR ERV1 449 707 0 475 212 0 22 chr13 28497708 28497892 -91247006 + CT-rich Low_complexity Low_complexity 1 180 0 185 0 40 0 chr13 28498680 28498705 -91246193 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1683 161 10 24 chr13 28498712 28499003 -91245895 - AluJb SINE Alu -25 287 1 581 269 58 45 chr13 28499022 28499187 -91245711 - MIR SINE MIR -26 236 66 2253 116 106 30 chr13 28499187 28499229 -91245669 - MSTA LTR MaLR 0 428 391 2256 125 0 0 chr13 28499229 28499534 -91245364 + AluSg SINE Alu 1 305 -5 2253 116 106 30 chr13 28499534 28499889 -91245009 - MSTA LTR MaLR -37 391 1 581 269 58 45 chr13 28499889 28499946 -91244952 - MIR SINE MIR -196 66 11 1843 123 3 53 chr13 28501392 28501693 -91243205 + AluSq SINE Alu 21 306 -7 746 305 72 84 chr13 28501865 28502600 -91242298 + L3 LINE CR1 831 1556 -21 205 389 44 9 chr13 28503195 28503308 -91241590 + L2 LINE L2 3141 3257 -15 294 318 36 0 chr13 28503512 28503622 -91241276 - L2 LINE L2 0 3272 3159 2230 96 0 10 chr13 28503745 28504037 -91240861 - AluSq SINE Alu -24 289 1 2356 116 0 3 chr13 28504223 28504534 -91240364 + AluSx SINE Alu 1 310 -2 229 282 0 26 chr13 28504859 28504937 -91239961 + GA-rich Low_complexity Low_complexity 3 78 0 5320 80 18 0 chr13 28507890 28508569 -91236329 - LTR8 LTR ERV1 0 691 1 2007 111 42 0 chr13 28509747 28510035 -91234863 + AluY SINE Alu 1 300 -11 286 221 232 0 chr13 28510156 28510251 -91234647 + MER5B DNA MER1_type 5 121 -57 756 180 61 142 chr13 28510278 28510589 -91234309 - L1MC4 LINE L1 -6 8036 7751 220 159 68 0 chr13 28510605 28510649 -91234249 - MER5B DNA MER1_type -125 53 7 2132 95 51 3 chr13 28510956 28511250 -91233648 + AluY SINE Alu 1 308 -3 1293 181 41 24 chr13 28511395 28511688 -91233210 + MER33 DNA MER1_type 27 324 0 2873 168 86 58 chr13 28512282 28512989 -91231909 + LTR8A LTR ERV1 1 727 0 1988 152 62 3 chr13 28514995 28515331 -91229567 + MLT2C1 LTR ERVL 1 356 -41 21 0 0 0 chr13 28515406 28515427 -91229471 + AT_rich Low_complexity Low_complexity 1 21 0 4371 253 44 18 chr13 28515440 28516901 -91227997 + L1M2 LINE L1 2794 4291 -2557 734 184 14 7 chr13 28516901 28517042 -91227856 - L1M4 LINE L1 -1893 4253 4112 4446 156 20 52 chr13 28517822 28517991 -91226907 - L1MC2 LINE L1 -1 6623 6450 1958 132 49 0 chr13 28517991 28518279 -91226619 + AluSc SINE Alu 1 302 -7 4446 156 20 52 chr13 28518279 28519005 -91225893 - L1MC2 LINE L1 -174 6450 5757 1515 156 16 0 chr13 28519016 28519272 -91225626 - L1MA7 LINE L1 0 6291 6032 1460 168 58 0 chr13 28519272 28519637 -91225261 - L1MC2 LINE L1 -747 5679 5379 907 215 62 8 chr13 28519660 28519902 -91224996 - L1MC2 LINE L1 -4109 2317 2063 2036 141 295 4 chr13 28519923 28520397 -91224501 - L1MC2 LINE L1 -4507 1919 1308 810 238 140 98 chr13 28520397 28520750 -91224148 + MER34B LTR ERV1 1 386 -179 3943 128 48 64 chr13 28520750 28521366 -91223532 + LTR8 LTR ERV1 1 606 -85 2654 37 0 0 chr13 28521366 28521664 -91223234 - AluY SINE Alu -13 298 1 3943 128 48 64 chr13 28521664 28521749 -91223149 + LTR8 LTR ERV1 606 691 0 810 238 140 98 chr13 28521749 28521937 -91222961 + MER34B LTR ERV1 386 565 0 336 251 132 12 chr13 28521945 28522112 -91222786 + MIR SINE MIR 48 234 -28 2161 120 0 3 chr13 28522876 28523167 -91221731 + AluY SINE Alu 1 290 -21 1409 209 34 33 chr13 28523220 28523787 -91221111 + L1ME1 LINE L1 5617 6178 0 452 286 45 82 chr13 28523880 28523989 -91220909 + L1ME LINE L1 5384 5496 -625 2441 101 0 0 chr13 28523989 28524296 -91220602 + AluSx SINE Alu 2 308 -4 452 286 45 82 chr13 28524296 28524613 -91220285 + L1ME LINE L1 5496 5794 -327 248 282 0 14 chr13 28525372 28525443 -91219455 + (TG)n Simple_repeat Simple_repeat 2 71 0 22 0 0 0 chr13 28525732 28525754 -91219144 + AT_rich Low_complexity Low_complexity 1 22 0 2006 212 61 50 chr13 28525828 28526469 -91218429 + L1MB8 LINE L1 5531 6178 0 403 295 0 87 chr13 28526462 28526703 -91218195 + L1ME3 LINE L1 5732 5951 -211 * 288 0 0 0 chr13 28526723 28526755 -91218143 + (TA)n Simple_repeat Simple_repeat 2 33 0 31 0 0 0 chr13 28526925 28526956 -91217942 + AT_rich Low_complexity Low_complexity 1 31 0 503 261 137 0 chr13 28526959 28527120 -91217778 - MIR SINE MIR -26 236 54 2035 126 0 38 chr13 28527578 28527895 -91217003 - AluSx SINE Alu -7 305 1 315 237 97 0 chr13 28529935 28530028 -91214870 - MER5B DNA MER1_type -31 147 46 6523 133 25 10 chr13 28530033 28531268 -91213630 - L1MA5A LINE L1 0 6939 5690 1231 189 70 0 chr13 28531256 28531569 -91213329 - L1MA5A LINE L1 -2885 3903 3569 * 21 71 0 0 chr13 28531571 28531613 -91213285 + AT_rich Low_complexity Low_complexity 1 42 0 305 218 0 2 chr13 28531622 28531706 -91213192 - L1ME1 LINE L1 -1 6177 6092 8140 166 38 18 chr13 28531916 28532554 -91212344 - L1PA16 LINE L1 0 6166 5542 279 0 0 0 chr13 28532554 28532585 -91212313 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8140 166 38 18 chr13 28532585 28534461 -91210437 - L1PA16 LINE L1 -624 5542 3611 1232 240 13 0 chr13 28534470 28534778 -91210120 - L1MA5A LINE L1 -3227 3561 3250 2065 110 16 3 chr13 28534785 28535093 -91209805 - AluSx SINE Alu 0 312 1 7672 204 13 32 chr13 28535093 28537158 -91207740 - L1MA5A LINE L1 -3958 2831 807 5884 219 34 28 chr13 28537157 28538502 -91206396 - L1M2c LINE L1 -5424 1365 14 * 2316 92 3 0 chr13 28538568 28538873 -91206025 + AluSp SINE Alu 1 306 -7 231 178 100 78 chr13 28539154 28539244 -91205654 - MLT1J LTR MaLR -341 170 79 223 318 53 60 chr13 28539316 28539467 -91205431 - MER5A DNA MER1_type 0 189 40 225 268 36 0 chr13 28539856 28539912 -91204986 + MIR SINE MIR 104 161 -101 * 266 269 0 0 chr13 28539901 28539968 -91204930 - MIR SINE MIR 0 262 196 203 133 22 22 chr13 28539968 28540013 -91204885 + (TA)n Simple_repeat Simple_repeat 1 45 0 713 275 26 36 chr13 28540013 28540186 -91204712 - MIR SINE MIR -57 205 33 2585 132 34 12 chr13 28540186 28540603 -91204295 + MSTA LTR MaLR 3 428 0 713 275 26 36 chr13 28540603 28540622 -91204276 - MIR SINE MIR -229 33 15 1030 80 0 66 chr13 28540750 28540901 -91203997 + AluSq/x SINE Alu 1 141 -171 1012 149 54 0 chr13 28540957 28541125 -91203773 - MSTA LTR MaLR 0 428 252 1050 105 0 7 chr13 28541135 28541287 -91203611 + AluSg/x SINE Alu 154 304 -8 182 83 56 0 chr13 28541406 28541442 -91203456 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 335 213 276 8 chr13 28543456 28543583 -91201315 - MER5B DNA MER1_type -14 164 4 369 273 81 37 chr13 28543657 28543818 -91201080 - MER5B DNA MER1_type 0 178 11 515 220 0 0 chr13 28543868 28543968 -91200930 - MER5A DNA MER1_type -79 110 11 388 298 71 30 chr13 28544202 28544370 -91200528 - MER5B DNA MER1_type -3 175 1 812 164 0 8 chr13 28544888 28545045 -91199853 + FLAM_C SINE Alu 1 156 0 1387 161 6 129 chr13 28545439 28545780 -91199118 - AluJo SINE Alu -1 301 3 262 322 133 38 chr13 28545831 28546042 -91198856 - MIR SINE MIR -12 250 20 2673 144 31 5 chr13 28546193 28546610 -91198288 + MSTA LTR MaLR 1 428 0 688 121 107 4 chr13 28546922 28547057 -91197841 - L1MD3 LINE L1 0 7808 7675 2214 87 0 10 chr13 28547058 28547356 -91197542 - AluSx SINE Alu -17 295 1 181 321 147 28 chr13 28547467 28547576 -91197322 + MIR SINE MIR 109 230 -32 1499 211 0 7 chr13 28548915 28549200 -91195698 + AluJo SINE Alu 3 285 -27 21 36 0 0 chr13 28549200 28549228 -91195670 + AT_rich Low_complexity Low_complexity 1 28 0 351 132 0 0 chr13 28549232 28549285 -91195613 + MSTC LTR MaLR 372 424 -4 358 204 4 101 chr13 28549290 28549416 -91195482 - L1MC4 LINE L1 -1339 6983 1995 306 0 0 0 chr13 28549417 28549451 -91195447 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 79 0 0 chr13 28549452 28549490 -91195408 - Alu SINE Alu -13 289 252 843 179 0 0 chr13 28549613 28549758 -91195140 + FRAM SINE Alu 1 142 -34 405 0 0 0 chr13 28549758 28549803 -91195095 + (TAA)n Simple_repeat Simple_repeat 3 47 0 211 268 138 89 chr13 28549813 28549906 -91194992 - MIR SINE MIR -15 247 145 2378 138 35 40 chr13 28549906 28550332 -91194566 - MSTC LTR MaLR -4 424 1 211 268 138 89 chr13 28550332 28550361 -91194537 - MIR SINE MIR -117 145 119 1654 151 39 10 chr13 28550881 28551192 -91193706 + L1MB3 LINE L1 5847 6166 -17 2135 109 7 0 chr13 28551203 28551506 -91193392 - AluSg SINE Alu -5 305 1 25 51 0 0 chr13 28551596 28551635 -91193263 + AT_rich Low_complexity Low_complexity 1 39 0 429 295 101 26 chr13 28551658 28552004 -91192894 - L1ME4a LINE L1 -135 5986 5615 531 231 0 0 chr13 28552042 28552176 -91192722 + (TG)n Simple_repeat Simple_repeat 1 134 0 492 301 98 6 chr13 28553009 28553192 -91191706 - L2 LINE L2 -5 3308 3109 319 269 60 118 chr13 28553506 28553870 -91191028 - L2 LINE L2 -1460 1854 1512 1457 235 86 45 chr13 28553873 28554468 -91190430 - L1MC5 LINE L1 -36 7925 7307 195 42 0 0 chr13 28554483 28554507 -91190391 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 1736 182 132 35 chr13 28554739 28555163 -91189735 + MLT1C LTR MaLR 1 465 -2 1390 266 89 67 chr13 28555166 28556071 -91188827 - L1MC5 LINE L1 -808 7153 6193 1927 120 0 52 chr13 28556071 28556395 -91188503 + AluSx SINE Alu 1 307 -5 1390 266 89 67 chr13 28556395 28557201 -91187697 - L1MC5 LINE L1 -1768 6193 5406 338 250 17 83 chr13 28557283 28557403 -91187495 + L2 LINE L2 3139 3250 -22 240 111 0 0 chr13 28557417 28557453 -91187445 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 743 310 78 23 chr13 28558192 28558832 -91186066 + L1ME3 LINE L1 5143 5826 -336 3195 215 14 9 chr13 28558841 28559491 -91185407 + MER82 DNA MER2_type 1 653 0 753 301 156 42 chr13 28560142 28560737 -91184161 - L3 LINE CR1 -517 1060 398 627 293 149 14 chr13 28561721 28561933 -91182965 - MLT1K LTR MaLR -114 474 292 744 124 62 98 chr13 28561933 28562127 -91182771 + MER53 DNA DNA 3 189 0 627 293 149 14 chr13 28562127 28562331 -91182567 - MLT1K LTR MaLR -296 292 2 208 361 14 0 chr13 28562458 28562530 -91182368 + L2 LINE L2 3151 3223 -49 246 376 15 15 chr13 28562773 28562906 -91181992 - MIR SINE MIR -80 182 50 245 326 133 0 chr13 28563298 28563396 -91181502 + MER91B DNA MER1_type 44 154 -36 279 230 46 35 chr13 28563448 28563535 -91181363 - MIR SINE MIR -111 97 10 2169 241 54 2 chr13 28564310 28564792 -91180106 + MLT2B3 LTR ERVL 2 508 -46 292 143 0 179 chr13 28564806 28564890 -91180008 + Tigger2 DNA MER2_type 1 69 -2649 * 2873 135 23 5 chr13 28564880 28565316 -91179582 + Tigger2 DNA MER2_type 2273 2716 -2 1926 163 60 3 chr13 28565360 28565729 -91179169 - MLT1B LTR MaLR 0 390 1 405 312 35 35 chr13 28566686 28566856 -91178042 + MIR3 SINE MIR 3 172 -36 1890 129 0 0 chr13 28567283 28567629 -91177269 - AluSx SINE Alu 0 347 2 216 0 0 0 chr13 28568505 28568529 -91176369 + (TC)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr13 28568529 28568558 -91176340 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr13 28568861 28568896 -91176002 + AT_rich Low_complexity Low_complexity 1 35 0 1719 211 98 7 chr13 28570895 28571312 -91173586 + MER31A LTR ERV1 1 455 -30 2057 91 14 3 chr13 28571980 28572266 -91172632 + AluSx SINE Alu 1 289 -23 931 149 0 11 chr13 28572266 28572441 -91172457 + (GGAA)n Simple_repeat Simple_repeat 1 173 0 194 213 0 53 chr13 28572441 28572535 -91172363 + GA-rich Low_complexity Low_complexity 4 92 0 401 304 44 38 chr13 28573018 28573176 -91171722 - MIR SINE MIR -15 247 89 198 200 44 0 chr13 28573174 28573219 -91171679 + MIR SINE MIR 50 96 -166 * 941 94 0 0 chr13 28573816 28573943 -91170955 - L1PA8 LINE L1 0 6172 6046 224 306 51 31 chr13 28574332 28574430 -91170468 + MIR SINE MIR 2 101 -161 728 259 58 8 chr13 28574632 28574891 -91170007 - LTR33 LTR ERVL -235 286 15 3093 162 11 22 chr13 28574937 28575292 -91169606 + MER34B LTR ERV1 1 349 -216 2010 92 50 3 chr13 28575292 28575574 -91169324 + AluSg SINE Alu 1 295 -15 3093 162 11 22 chr13 28575574 28575760 -91169138 + MER34B LTR ERV1 349 536 -29 267 348 208 13 chr13 28576064 28576377 -91168521 - L2 LINE L2 -373 2941 2568 523 251 6 55 chr13 28576378 28576541 -91168357 - L2 LINE L2 0 3313 3159 245 258 65 0 chr13 28577101 28577163 -91167735 - L2 LINE L2 -5 3308 3243 2004 117 0 0 chr13 28577586 28577898 -91167000 + AluSx SINE Alu 1 312 0 2682 96 30 6 chr13 28578788 28579154 -91165744 - THE1C LTR MaLR 0 375 1 2527 17 3 0 chr13 28579160 28579450 -91165448 + L1PA2 LINE L1 5861 6151 -4 191 59 0 29 chr13 28579461 28579495 -91165403 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 748 246 36 15 chr13 28580024 28580219 -91164679 + MLT1A1 LTR MaLR 167 365 0 427 341 17 0 chr13 28580537 28580753 -91164145 + (TG)n Simple_repeat Simple_repeat 1 219 0 747 262 113 51 chr13 28581373 28581782 -91163116 + LTR33 LTR ERVL 35 468 -53 284 267 178 20 chr13 28581834 28581935 -91162963 + L2 LINE L2 3192 3308 -5 222 289 62 55 chr13 28582664 28582792 -91162106 + MIR3 SINE MIR 78 206 -2 1899 122 0 34 chr13 28584161 28584455 -91160443 + AluSq SINE Alu 1 284 -29 1204 123 0 53 chr13 28584268 28584455 -91160443 + AluSq SINE Alu 108 443 0 1180 75 0 0 chr13 28584455 28584614 -91160284 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 206 346 47 19 chr13 28584616 28584723 -91160175 + L2 LINE L2 3159 3268 -4 607 134 126 0 chr13 28585311 28585438 -91159460 + MER53 DNA DNA 27 169 -20 195 42 0 0 chr13 28585954 28585978 -91158920 + (TG)n Simple_repeat Simple_repeat 1 24 0 488 279 50 25 chr13 28588038 28588239 -91156659 + MIR SINE MIR 9 214 -48 418 247 104 68 chr13 28588760 28589089 -91155809 + L2 LINE L2 2737 3088 -225 2284 102 10 0 chr13 28589635 28589930 -91154968 + AluSx SINE Alu 1 298 -14 3250 162 108 22 chr13 28590220 28590886 -91154012 + LTR8A LTR ERV1 1 723 -4 235 263 11 32 chr13 28590918 28591013 -91153885 + L2 LINE L2 3160 3252 -61 569 241 67 97 chr13 28591367 28591666 -91153232 + MLT1F1 LTR MaLR 1 290 -252 1047 205 68 0 chr13 28591824 28592073 -91152825 + MLT1F1 LTR MaLR 302 567 0 181 300 273 9 chr13 28592099 28592209 -91152689 - MIR SINE MIR -118 144 6 499 253 54 18 chr13 28594270 28594436 -91150462 + MIR SINE MIR 77 248 -14 434 260 140 25 chr13 28595298 28595533 -91149365 - MIR SINE MIR 0 262 1 374 358 26 66 chr13 28596655 28596760 -91148138 - L2 LINE L2 0 3272 3164 2049 129 13 10 chr13 28596760 28597069 -91147829 + AluSx SINE Alu 1 310 -2 374 358 26 66 chr13 28597069 28597419 -91147479 - L2 LINE L2 -108 3164 2835 208 377 50 0 chr13 28597498 28597718 -91147180 - L2 LINE L2 -910 2404 2174 356 311 46 13 chr13 28598058 28598209 -91146689 - L2 LINE L2 -17 3255 3100 1885 194 42 33 chr13 28598300 28598758 -91146140 - MLT1C LTR MaLR 0 467 6 254 267 0 0 chr13 28598774 28598834 -91146064 + L2 LINE L2 3246 3305 -8 340 274 141 94 chr13 28599165 28599233 -91145665 + L1MC4a LINE L1 5549 5612 -2196 1638 141 4 16 chr13 28599233 28599482 -91145416 + AluSx SINE Alu 58 303 -9 340 274 141 94 chr13 28599482 28599647 -91145251 + L1MC4a LINE L1 5612 5793 -2015 490 270 104 64 chr13 28599649 28599994 -91144904 - MLT1J LTR MaLR -49 462 104 271 293 8 49 chr13 28600024 28600147 -91144751 + L1MC4a LINE L1 5799 5916 -1892 2206 161 57 92 chr13 28600154 28600787 -91144111 + LTR36 LTR ERV1 1 611 0 396 359 5 26 chr13 28600853 28601045 -91143853 + LTR36-int LTR ERV1 115 302 -1484 1455 137 36 44 chr13 28601594 28601901 -91142997 + LTR36-int LTR ERV1 883 1191 -5407 4087 128 16 12 chr13 28601901 28602543 -91142355 - LTR9B LTR ERV1 0 644 1 1455 137 36 44 chr13 28602543 28602606 -91142292 + LTR36-int LTR ERV1 1191 2479 -4119 265 216 0 0 chr13 28602606 28602657 -91142241 + LTR30 LTR ERV1 1 51 -671 1768 107 44 38 chr13 28602658 28602993 -91141905 + LTR12 LTR ERV1 57 2032 -406 307 286 9 0 chr13 28602994 28603099 -91141799 + LTR30 LTR ERV1 553 658 -64 543 108 0 0 chr13 28603099 28603173 -91141725 + LTR12 LTR ERV1 641 714 0 1844 151 32 26 chr13 28603181 28603463 -91141435 + LTR36-int LTR ERV1 1260 1539 -5137 2411 64 0 7 chr13 28603463 28603758 -91141140 + AluY SINE Alu 17 309 -2 1844 151 32 26 chr13 28603758 28603968 -91140930 + LTR36-int LTR ERV1 1539 3752 -2924 662 117 0 0 chr13 28603959 28604053 -91140845 + LTR36-int LTR ERV1 3975 4068 -2530 * 3350 177 33 20 chr13 28604041 28604681 -91140217 + LTR36-int LTR ERV1 1631 2278 -2602 12677 155 44 65 chr13 28604728 28607532 -91137366 + LTR36-int LTR ERV1 2758 5796 -514 881 179 81 58 chr13 28607578 28607801 -91137097 + LTR36-int LTR ERV1 5923 6150 -181 437 171 1 0 chr13 28607816 28607890 -91137008 + MER49 LTR ERV1 488 557 -165 356 301 75 86 chr13 28607964 28608313 -91136585 + LTR36-int LTR ERV1 6705 7049 -73 2068 151 121 97 chr13 28608353 28608950 -91135948 + LTR36 LTR ERV1 1 611 0 260 122 0 49 chr13 28609257 28609298 -91135600 + MER34C LTR ERV1 1 39 -546 245 260 0 39 chr13 28609816 28609893 -91135005 + MER34 LTR ERV1 67 140 -402 * 1102 208 156 57 chr13 28609866 28610289 -91134609 + MER39 LTR ERV1 220 684 -23 2290 108 0 0 chr13 28610358 28610653 -91134245 - AluSg SINE Alu -15 295 1 2002 148 7 19 chr13 28611265 28611575 -91133323 + AluSx SINE Alu 1 306 -6 794 206 104 128 chr13 28611896 28612387 -91132511 - MER39 LTR ERV1 -80 627 1 22 35 0 0 chr13 28612423 28612452 -91132446 + AT_rich Low_complexity Low_complexity 1 29 0 2113 120 0 13 chr13 28612617 28612917 -91131981 + AluSx SINE Alu 1 296 -16 234 261 0 54 chr13 28612964 28613056 -91131842 + L2 LINE L2 3083 3169 -144 630 143 0 0 chr13 28613076 28613181 -91131717 - L1MB4 LINE L1 -2 6178 6074 446 231 74 84 chr13 28613590 28613772 -91131126 + MER31-int LTR ERV1 1348 1530 -3341 2559 43 0 7 chr13 28613772 28614071 -91130827 - AluY SINE Alu -13 298 2 446 231 74 84 chr13 28614071 28614091 -91130807 + MER31-int LTR ERV1 1530 2493 -2378 512 198 32 0 chr13 28614419 28614545 -91130353 + MER31-int LTR ERV1 1724 1853 -6267 264 123 25 99 chr13 28614548 28614629 -91130269 + MER31-int LTR ERV1 3888 3962 -2636 4623 206 99 72 chr13 28614667 28617315 -91127583 + MER31-int LTR ERV1 2876 7144 -393 2595 158 23 44 chr13 28617315 28617835 -91127063 + LTR54 LTR ERV1 1 509 -1 2211 111 3 7 chr13 28618088 28618386 -91126512 + AluSx SINE Alu 1 297 -15 244 336 35 49 chr13 28618418 28618644 -91126254 + L1MC/D LINE L1 5564 5786 -2022 605 222 122 11 chr13 28618647 28618827 -91126071 - MER63A DNA MER1_type 0 210 11 3973 99 106 2 chr13 28619268 28619851 -91125047 - LTR9B LTR ERV1 0 644 1 306 237 132 91 chr13 28621121 28621340 -91123558 + MIR SINE MIR 14 241 -21 2620 56 0 0 chr13 28621790 28622093 -91122805 + AluY SINE Alu 1 303 -8 21 0 0 0 chr13 28622133 28622154 -91122744 + AT_rich Low_complexity Low_complexity 1 21 0 459 243 34 20 chr13 28622182 28622330 -91122568 - MIR SINE MIR -1 261 112 262 259 28 54 chr13 28622623 28622835 -91122063 + L1MC/D LINE L1 5334 5544 -698 297 302 66 0 chr13 28623190 28623296 -91121602 - MIR3 SINE MIR -44 164 52 806 217 16 5 chr13 28623495 28623679 -91121219 + MER5A DNA MER1_type 1 186 -3 504 215 158 13 chr13 28623689 28623847 -91121051 - MER5A DNA MER1_type 0 189 9 344 193 244 8 chr13 28623933 28624052 -91120846 + MER5A DNA MER1_type 9 155 -34 2002 191 59 65 chr13 28624582 28624684 -91120214 - MLT1D LTR MaLR 0 505 404 2044 82 104 0 chr13 28624684 28624953 -91119945 + AluSx SINE Alu 1 297 -15 2002 191 59 65 chr13 28624953 28625358 -91119540 - MLT1D LTR MaLR -101 404 1 346 318 129 9 chr13 28626404 28626621 -91118277 - MIR SINE MIR -1 261 19 298 300 181 6 chr13 28627814 28627974 -91116924 + MIR SINE MIR 54 241 -21 325 157 0 0 chr13 28628305 28628356 -91116542 - LTR67 LTR ERVL 0 557 507 747 202 202 22 chr13 28628431 28628659 -91116239 - MLT1J1 LTR MaLR -175 271 3 262 295 13 0 chr13 28628722 28628800 -91116098 - LTR67 LTR ERVL -476 81 3 337 183 28 28 chr13 28628846 28628917 -91115981 - MLT1F1 LTR MaLR -131 436 366 440 214 51 17 chr13 28629094 28629211 -91115687 - L2 LINE L2 0 3313 3193 2161 111 7 33 chr13 28629258 28629564 -91115334 - AluSx SINE Alu -14 298 1 835 124 23 0 chr13 28630882 28631011 -91113887 + L1MB3 LINE L1 5982 6113 -70 2195 115 0 3 chr13 28631355 28631650 -91113248 + AluSx SINE Alu 1 294 -18 1759 169 48 67 chr13 28631803 28632145 -91112753 + MER31-int LTR ERV1 2654 2988 -3343 2269 137 6 3 chr13 28632145 28632481 -91112417 + MER1B DNA MER1_type 1 337 0 1759 169 48 67 chr13 28632481 28632557 -91112341 + MER31-int LTR ERV1 2988 3064 -3267 282 188 101 0 chr13 28632558 28632627 -91112271 + MER31-int LTR ERV1 1339 1414 -3522 * 482 260 84 36 chr13 28632568 28632818 -91112080 + LTR57-int LTR ERVL 1249 1510 -3833 618 222 66 70 chr13 28632882 28633125 -91111773 + MER31-int LTR ERV1 1736 1977 -2959 * 938 225 42 63 chr13 28633117 28633625 -91111273 + MER31-int LTR ERV1 2714 4068 -1697 676 168 41 46 chr13 28633790 28633986 -91110912 + MER31-int LTR ERV1 3536 3730 -2868 2037 138 0 14 chr13 28634002 28634299 -91110599 - AluSx SINE Alu -19 293 1 1215 212 84 84 chr13 28634527 28635135 -91109763 + MER31-int LTR ERV1 2481 3087 -2859 1694 190 3 3 chr13 28635135 28635424 -91109474 + AluJo SINE Alu 1 289 -23 1215 212 84 84 chr13 28635424 28635572 -91109326 + MER31-int LTR ERV1 3087 3233 -2713 238 33 0 0 chr13 28635572 28635602 -91109296 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2277 75 4 0 chr13 28635602 28635881 -91109017 - AluY SINE Alu -31 280 1 1215 212 84 84 chr13 28635881 28636410 -91108488 + MER31-int LTR ERV1 3232 4900 -1046 2843 109 28 14 chr13 28636429 28636851 -91108047 - MSTA LTR MaLR 0 428 1 2195 89 17 0 chr13 28636878 28637170 -91107728 + AluY SINE Alu 1 297 -14 536 227 13 13 chr13 28637320 28637390 -91107508 + MER31-int LTR ERV1 4256 4325 -611 1596 123 9 13 chr13 28637390 28637618 -91107280 - AluSg/x SINE Alu -10 300 74 536 227 13 13 chr13 28637618 28637697 -91107201 + MER31-int LTR ERV1 4324 4405 -531 2208 116 17 0 chr13 28637795 28638120 -91106778 + AluSx SINE Alu 1 312 0 2899 118 18 51 chr13 28639455 28639945 -91104953 + MER101 LTR ERV1 1 474 0 1353 183 166 46 chr13 28640576 28640987 -91103911 + MLT1C LTR MaLR 8 467 0 327 293 32 18 chr13 28641355 28641447 -91103451 + MIR SINE MIR 61 156 -99 1341 218 29 55 chr13 28641447 28641827 -91103071 + MLT1A2 LTR MaLR 1 370 -4 327 293 32 18 chr13 28641827 28641865 -91103033 + MIR SINE MIR 156 192 -63 231 297 54 0 chr13 28642604 28642715 -91102183 + MLT1L LTR MaLR 468 584 -31 1762 156 49 52 chr13 28642990 28643135 -91101763 - MLT1A1 LTR MaLR 0 365 221 2980 80 3 0 chr13 28643135 28643509 -91101389 + THE1C LTR MaLR 1 375 0 1762 156 49 52 chr13 28643509 28643729 -91101169 - MLT1A1 LTR MaLR -144 221 1 2379 102 0 13 chr13 28643784 28644099 -91100799 - AluSx SINE Alu -1 311 1 4275 188 55 18 chr13 28644172 28645003 -91099895 - MER21B LTR ERV1 -1 862 1 234 361 34 17 chr13 28645219 28645338 -91099560 + MIR SINE MIR 24 144 -64 237 310 54 93 chr13 28645474 28645524 -91099374 + MIR SINE MIR 50 100 -162 2097 120 20 7 chr13 28645524 28645824 -91099074 - AluSq SINE Alu -9 304 1 237 310 54 93 chr13 28645824 28645902 -91098996 + MIR SINE MIR 100 173 -89 298 260 24 24 chr13 28646712 28646839 -91098059 + MLT1I LTR MaLR 80 206 -203 207 342 42 17 chr13 28647071 28647191 -91097707 - L2 LINE L2 -14 3258 3136 2734 35 0 3 chr13 28647404 28647716 -91097182 - AluY SINE Alu 0 311 1 2264 177 44 18 chr13 28647972 28648425 -91096473 - MLT1C LTR MaLR -2 465 1 352 314 9 9 chr13 28648902 28649007 -91095891 - L2 LINE L2 -7 3265 3161 453 215 0 0 chr13 28649182 28649261 -91095637 + L2 LINE L2 3221 3299 -14 1665 98 0 0 chr13 28649265 28649479 -91095419 + AluSg/x SINE Alu 89 302 -8 2355 64 0 4 chr13 28650124 28650448 -91094450 + AluY SINE Alu 1 323 0 893 294 39 56 chr13 28650478 28650964 -91093934 + L2 LINE L2 2429 2906 -408 602 298 0 42 chr13 28651077 28651245 -91093653 + L2 LINE L2 3110 3270 -2 423 307 34 65 chr13 28651576 28651928 -91092970 - MLT1K LTR MaLR -2 586 246 638 286 105 21 chr13 28652302 28652627 -91092271 - L1MC4a LINE L1 -1888 5920 5569 267 288 0 12 chr13 28652715 28652795 -91092103 + MER5A DNA MER1_type 111 189 0 422 331 32 8 chr13 28652854 28653105 -91091793 - L1MC4a LINE L1 -2298 5510 5254 266 146 182 0 chr13 28653266 28653321 -91091577 + MER5B DNA MER1_type 114 178 0 206 326 126 0 chr13 28653321 28653408 -91091490 - L2 LINE L2 -52 3220 3122 190 242 162 40 chr13 28653961 28654060 -91090838 + L2 LINE L2 3162 3272 0 199 213 21 43 chr13 28654136 28654183 -91090715 + MIR SINE MIR 215 260 -2 1758 184 0 0 chr13 28655964 28656241 -91088657 + AluJo SINE Alu 1 277 -35 288 281 163 13 chr13 28659057 28659210 -91085688 - MIR SINE MIR -78 184 9 255 140 43 183 chr13 28659413 28659459 -91085439 - MIR SINE MIR -74 188 159 1666 197 0 3 chr13 28659459 28659639 -91085259 - AluJb SINE Alu 0 310 130 207 0 0 0 chr13 28659639 28659662 -91085236 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1666 197 0 3 chr13 28659662 28659792 -91085106 - AluJb SINE Alu -180 130 1 255 140 43 183 chr13 28659792 28659837 -91085061 - MIR SINE MIR -103 159 109 637 239 203 29 chr13 28659919 28660304 -91084594 - LTR33 LTR ERVL -54 467 16 180 0 0 0 chr13 28661073 28661093 -91083805 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1479 166 72 19 chr13 28661688 28662008 -91082890 + MLT1B LTR MaLR 54 390 0 310 302 138 2 chr13 28662250 28662441 -91082457 + MIR3 SINE MIR 21 242 -20 182 103 0 26 chr13 28662903 28662942 -91081956 + (CGG)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr13 28663744 28663773 -91081125 + AT_rich Low_complexity Low_complexity 1 29 0 1954 166 41 0 chr13 28663860 28664198 -91080700 - MLT1A1 LTR MaLR -13 352 1 1112 171 28 0 chr13 28665237 28665418 -91079480 + MER5A DNA MER1_type 2 187 -2 385 280 71 145 chr13 28665641 28665817 -91079081 + L3 LINE CR1 570 757 -820 1891 147 43 40 chr13 28665817 28666191 -91078707 - THE1C LTR MaLR 0 375 1 385 280 71 145 chr13 28666191 28666517 -91078381 + L3 LINE CR1 757 1024 -553 1378 196 81 110 chr13 28666517 28666964 -91077934 + MLT1D LTR MaLR 1 435 -70 2044 115 0 0 chr13 28666964 28667287 -91077611 - AluY SINE Alu 0 325 3 1378 196 81 110 chr13 28667287 28667357 -91077541 + MLT1D LTR MaLR 435 505 0 385 280 71 145 chr13 28667357 28667446 -91077452 + L3 LINE CR1 1024 1118 -459 763 265 69 52 chr13 28667446 28667737 -91077161 + L3 LINE CR1 1279 1574 -3 742 315 65 15 chr13 28668658 28669090 -91075808 + L1MC/D LINE L1 5257 5705 -503 212 372 121 14 chr13 28669562 28669785 -91075113 + L3 LINE CR1 255 501 -1076 186 302 0 0 chr13 28669830 28669873 -91075025 + MIR SINE MIR 97 139 -123 494 238 82 14 chr13 28669975 28670122 -91074776 + MIR3 SINE MIR 41 197 -11 1304 256 41 5 chr13 28670186 28670774 -91074124 - L1MC4 LINE L1 -93 7715 7188 358 222 0 0 chr13 28670830 28670911 -91073987 + MLT1B LTR MaLR 310 390 0 417 235 191 0 chr13 28670912 28671048 -91073850 - L1MC4 LINE L1 -1422 6620 6459 332 310 187 23 chr13 28671476 28671824 -91073074 + L2 LINE L2 2258 2662 -652 203 320 97 26 chr13 28672132 28672360 -91072538 + L2 LINE L2 2658 2901 -413 246 271 152 26 chr13 28672859 28673010 -91071888 + MIR3 SINE MIR 17 186 -22 269 307 119 0 chr13 28673238 28673424 -91071474 + MIR SINE MIR 33 245 -17 * 675 272 46 0 chr13 28673401 28673574 -91071324 - MIR SINE MIR -8 254 74 193 308 0 0 chr13 28673640 28673659 -91071239 + MIR SINE MIR 198 249 -13 201 182 0 0 chr13 28673659 28673692 -91071206 + L2 LINE L2 3262 3294 -19 323 23 23 0 chr13 28673819 28673863 -91071035 + (TG)n Simple_repeat Simple_repeat 2 46 0 370 301 41 8 chr13 28674376 28674499 -91070399 - MIR3 SINE MIR -4 204 78 184 319 35 57 chr13 28674612 28674753 -91070145 - L3 LINE CR1 -107 1470 1333 608 274 53 36 chr13 28675445 28675670 -91069228 - MIR SINE MIR 0 262 32 180 278 46 93 chr13 28676070 28676221 -91068677 - L2 LINE L2 -1975 1339 1196 456 287 53 45 chr13 28676311 28676555 -91068343 + L2 LINE L2 2825 3070 -202 210 71 0 0 chr13 28676621 28676649 -91068249 + (T)n Simple_repeat Simple_repeat 1 28 0 2354 92 0 0 chr13 28677101 28677394 -91067504 - AluSx SINE Alu -19 293 1 2057 114 28 14 chr13 28678240 28678529 -91066369 - AluSx SINE Alu -19 293 1 257 245 31 31 chr13 28678530 28678628 -91066270 + Charlie7 DNA MER1_type 2513 2610 -2 2101 95 3 7 chr13 28678954 28679273 -91065625 + AluSx SINE Alu 1 318 0 443 318 68 6 chr13 28679277 28679453 -91065445 - MIR SINE MIR -72 190 4 2400 67 0 41 chr13 28679780 28680094 -91064804 + AluSx SINE Alu 1 301 -11 1307 143 46 0 chr13 28680506 28680743 -91064155 - L1MA8 LINE L1 -1 6290 6043 522 292 101 14 chr13 28682602 28682821 -91062077 - MIR SINE MIR -10 252 15 209 278 250 11 chr13 28683054 28683230 -91061668 - L2 LINE L2 -12 3301 3084 281 275 124 34 chr13 28683414 28683592 -91061306 - L2 LINE L2 -554 2760 2567 445 278 114 18 chr13 28683956 28684183 -91060715 - L2 LINE L2 -780 2534 2286 201 345 12 0 chr13 28684232 28684316 -91060582 + C-rich Low_complexity Low_complexity 6 90 0 23 33 0 0 chr13 28684374 28684404 -91060494 + AT_rich Low_complexity Low_complexity 1 30 0 541 287 65 28 chr13 28684559 28684775 -91060123 - MIR SINE MIR -23 239 16 293 299 75 41 chr13 28685145 28685292 -91059606 + MIR SINE MIR 35 186 -76 445 269 0 0 chr13 28685418 28685526 -91059372 + MIR SINE MIR 119 226 -36 1043 262 31 12 chr13 28685569 28685890 -91059008 + L1MC4 LINE L1 6718 7044 -998 1775 81 0 0 chr13 28685910 28686121 -91058777 + AluSg/x SINE Alu 88 298 -14 403 333 68 0 chr13 28686165 28686399 -91058499 + L1MC4 LINE L1 7171 7420 -622 394 221 88 0 chr13 28686442 28686555 -91058343 + L1MC4 LINE L1 7918 8040 -2 2713 65 0 0 chr13 28686905 28687328 -91057570 - L1P3 LINE L1 -566 5606 5184 4076 56 15 0 chr13 28687328 28687846 -91057052 + L1PA8 LINE L1 5646 6172 0 462 331 60 59 chr13 28688098 28688139 -91056759 + L2 LINE L2 2076 2115 -1199 641 184 0 0 chr13 28688139 28688264 -91056634 - L1MA4A LINE L1 -3 6300 6176 462 331 60 59 chr13 28688264 28688812 -91056086 + L2 LINE L2 2115 2669 -645 2711 51 0 0 chr13 28688812 28689123 -91055775 + AluY SINE Alu 1 311 0 462 331 60 59 chr13 28689123 28689181 -91055717 + L2 LINE L2 2669 2725 -589 225 281 148 23 chr13 28689390 28689518 -91055380 + L2 LINE L2 3086 3229 -43 440 285 12 22 chr13 28689561 28689715 -91055183 - MIR3 SINE MIR -1 207 58 2011 156 0 10 chr13 28690249 28690551 -91054347 - AluJo SINE Alu -13 299 1 1214 221 89 63 chr13 28691977 28692439 -91052459 - MLT1J LTR MaLR -8 503 30 335 325 98 8 chr13 28692649 28692772 -91052126 + MER5A DNA MER1_type 55 188 -1 202 139 28 0 chr13 28693117 28693153 -91051745 + GA-rich Low_complexity Low_complexity 3 39 0 1103 229 104 18 chr13 28693295 28693769 -91051129 + MER20B DNA MER1_type 118 667 -116 1579 158 3 99 chr13 28694482 28694804 -91050094 + AluJo SINE Alu 1 291 -21 805 199 12 12 chr13 28695082 28695243 -91049655 - MER5B DNA MER1_type 0 178 18 1796 188 36 35 chr13 28695849 28696303 -91048595 + MLT1C LTR MaLR 1 619 -7 585 309 27 18 chr13 28696350 28696570 -91048328 + MIR SINE MIR 12 233 -29 370 277 69 15 chr13 28697398 28697528 -91047370 - L2 LINE L2 -1 3312 3176 190 283 50 100 chr13 28697672 28697792 -91047106 - L2 LINE L2 -4 3309 3196 873 174 16 47 chr13 28698641 28698831 -91046067 - MER20B DNA MER1_type -26 193 10 360 225 113 0 chr13 28698902 28698982 -91045916 - MER81 DNA DNA -25 89 1 296 312 69 35 chr13 28699056 28699258 -91045640 + L2 LINE L2 3099 3307 -6 814 278 0 54 chr13 28699681 28699922 -91044976 + MIR SINE MIR 14 241 -21 2174 236 38 22 chr13 28699952 28700485 -91044413 - MLT1F LTR MaLR 0 542 2 267 194 5 10 chr13 28702545 28702621 -91042277 + MIR SINE MIR 57 103 -105 * 362 287 67 22 chr13 28702599 28702867 -91042031 + L2 LINE L2 2404 2683 -631 586 272 51 30 chr13 28702932 28703167 -91041731 - MIR SINE MIR -22 240 1 203 269 173 10 chr13 28704643 28704747 -91040151 + MIR3 SINE MIR 65 185 -23 23 68 0 0 chr13 28704767 28704811 -91040087 + AT_rich Low_complexity Low_complexity 1 44 0 1765 170 38 9 chr13 28706410 28706751 -91038147 - MLT1A1 LTR MaLR -12 353 3 362 340 104 0 chr13 28707319 28707463 -91037435 - MIR3 SINE MIR -47 161 3 2380 90 0 0 chr13 28708004 28708294 -91036604 + AluSx SINE Alu 2 291 -21 384 22 0 0 chr13 28708433 28708478 -91036420 + (CA)n Simple_repeat Simple_repeat 1 45 0 306 253 104 3 chr13 28709056 28709151 -91035747 + MIR SINE MIR 11 124 -84 1220 122 145 37 chr13 28709152 28709366 -91035532 - AluSx SINE Alu -12 300 64 229 282 0 26 chr13 28710883 28710961 -91033937 + CT-rich Low_complexity Low_complexity 3 78 0 2499 75 10 0 chr13 28711286 28711593 -91033305 - AluSp SINE Alu -2 311 2 182 247 124 31 chr13 28711691 28711788 -91033110 - L2 LINE L2 -1047 2267 2162 702 141 39 0 chr13 28713145 28713273 -91031625 + L1P3 LINE L1 5343 5475 -697 949 236 94 9 chr13 28713339 28713572 -91031326 - MIR SINE MIR 0 262 10 608 206 90 13 chr13 28713818 28713973 -91030925 - L2 LINE L2 -5 3308 3142 * 850 262 86 11 chr13 28713966 28714233 -91030665 - L2 LINE L2 -353 2961 2675 302 175 0 169 chr13 28714872 28715026 -91029872 + L1M1 LINE L1 5327 5423 -728 2462 92 0 0 chr13 28715043 28715349 -91029549 + AluSg SINE Alu 2 307 -3 908 87 13 40 chr13 28715810 28715959 -91028939 + MSTB1 LTR MaLR 286 430 -2 463 253 32 158 chr13 28715994 28716310 -91028588 - MER21B LTR ERV1 -582 281 6 2925 173 55 11 chr13 28716911 28717658 -91027240 - L1MA4 LINE L1 -15 6290 5488 2276 105 0 3 chr13 28718001 28718296 -91026602 - AluSx SINE Alu -14 298 5 207 107 0 0 chr13 28718328 28718356 -91026542 - MIR SINE MIR -114 148 121 248 159 68 0 chr13 28718487 28718531 -91026367 + MIR SINE MIR 121 167 -95 2305 107 0 3 chr13 28718543 28718842 -91026056 + AluSx SINE Alu 1 298 -14 2009 146 7 10 chr13 28719146 28719448 -91025450 + AluSx SINE Alu 3 303 -9 2750 129 17 2 chr13 28719925 28720342 -91024556 - MSTB LTR MaLR -3 423 1 238 257 0 68 chr13 28720637 28720711 -91024187 + MIR SINE MIR 36 104 -158 260 171 0 0 chr13 28720737 28720778 -91024120 + L2 LINE L2 3256 3296 -17 276 298 88 35 chr13 28721273 28721387 -91023511 - L2 LINE L2 -10 3262 3143 258 264 57 28 chr13 28721723 28721829 -91023069 + Charlie7 DNA MER1_type 1 109 -2503 488 243 71 47 chr13 28722462 28722631 -91022267 + MIR SINE MIR 71 243 -19 1848 232 153 30 chr13 28723911 28724676 -91020222 + L2 LINE L2 2187 2857 -456 2293 118 48 22 chr13 28724676 28725031 -91019867 + THE1B LTR MaLR 1 364 0 1848 232 153 30 chr13 28725031 28725184 -91019714 + L2 LINE L2 2857 2990 -323 2286 125 3 0 chr13 28725184 28725495 -91019403 - AluSx SINE Alu 0 312 1 1848 232 153 30 chr13 28725495 28725589 -91019309 + L2 LINE L2 2990 3311 -2 328 280 119 28 chr13 28725623 28725766 -91019132 + MIR SINE MIR 3 158 -104 302 253 80 53 chr13 28725844 28725994 -91018904 + L2 LINE L2 2564 2717 -597 3701 221 19 60 chr13 28726050 28727058 -91017840 + L1M4 LINE L1 38 1004 -5538 340 239 0 0 chr13 28727063 28727134 -91017764 + MLT2B2 LTR ERVL 380 450 -65 1905 230 74 11 chr13 28727138 28727803 -91017095 + L1M4 LINE L1 3420 4126 -2518 335 299 136 69 chr13 28727932 28728293 -91016605 + L2 LINE L2 2886 3270 -2 285 245 31 41 chr13 28729197 28729295 -91015603 - MIR SINE MIR -157 105 9 2712 128 74 54 chr13 28731165 28731301 -91013597 - LTR36 LTR ERV1 -38 573 441 2052 114 0 0 chr13 28731301 28731574 -91013324 + AluSx SINE Alu 1 273 -39 2712 128 74 54 chr13 28731574 28731991 -91012907 - LTR36 LTR ERV1 -170 441 9 2303 107 3 19 chr13 28731991 28732308 -91012590 + AluSp SINE Alu 1 312 -1 363 304 69 19 chr13 28732406 28732579 -91012319 + MIR SINE MIR 70 246 -16 252 0 0 0 chr13 28732756 28732784 -91012114 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr13 28733932 28733954 -91010944 + AT_rich Low_complexity Low_complexity 1 22 0 317 356 39 86 chr13 28735612 28736019 -91008879 + L2 LINE L2 2881 3268 -4 898 264 17 17 chr13 28737698 28737937 -91006961 - MIR SINE MIR -23 239 1 2187 104 3 0 chr13 28738436 28738734 -91006164 + AluY SINE Alu 1 299 -12 910 199 70 7 chr13 28739818 28740207 -91004691 - L1MDa LINE L1 -3712 2828 2407 3159 126 37 66 chr13 28740215 28740911 -91003987 - Tigger3(Golem) DNA MER2_type 0 3029 2354 1077 206 5 0 chr13 28740904 28741103 -91003795 - Tigger3(Golem) DNA MER2_type -2828 201 2 * 2635 213 68 11 chr13 28741105 28741855 -91003043 - L1MDa LINE L1 -4141 2399 1607 825 304 43 31 chr13 28742278 28742316 -91002582 - L1MDa LINE L1 -6098 442 406 2382 111 11 32 chr13 28742316 28742687 -91002211 - THE1B LTR MaLR 0 364 2 825 304 43 31 chr13 28742687 28743069 -91001829 - L1MDa LINE L1 -6134 406 17 180 0 0 0 chr13 28744235 28744255 -91000643 + (TG)n Simple_repeat Simple_repeat 1 20 0 422 243 19 19 chr13 28745050 28745153 -90999745 - L2 LINE L2 0 3313 3211 847 317 149 10 chr13 28745496 28745906 -90998992 - L3 LINE CR1 -668 909 443 189 306 35 35 chr13 28746672 28746757 -90998141 + MER5B DNA MER1_type 1 85 -93 2536 44 0 3 chr13 28746822 28747119 -90997779 - AluY SINE Alu -15 296 1 2133 102 0 20 chr13 28747120 28747414 -90997484 - AluY SINE Alu -23 288 1 267 206 32 16 chr13 28747414 28747477 -90997421 + MER5B DNA MER1_type 114 177 -1 202 204 114 0 chr13 28747828 28747872 -90997026 + MIR SINE MIR 81 129 -79 2313 119 0 0 chr13 28747892 28748204 -90996694 + AluSx SINE Alu 1 312 0 546 261 81 58 chr13 28748498 28748793 -90996105 + MLT1I LTR MaLR 71 372 -37 1926 118 33 0 chr13 28750082 28750394 -90994504 + AluSx SINE Alu 1 321 0 216 0 0 0 chr13 28750621 28750645 -90994253 + (T)n Simple_repeat Simple_repeat 1 24 0 197 340 0 0 chr13 28750968 28751021 -90993877 + L2 LINE L2 3175 3227 -86 371 145 26 26 chr13 28752158 28752234 -90992664 + MER63 DNA MER1_type 677 752 -310 723 287 20 5 chr13 28752339 28752541 -90992357 - MIR SINE MIR -39 223 19 357 278 62 14 chr13 28753510 28753654 -90991244 - MER112 DNA MER1_type -17 243 93 1258 232 156 8 chr13 28753735 28754256 -90990642 + Charlie7 DNA MER1_type 1758 2355 -257 29 60 0 0 chr13 28754612 28754662 -90990236 + AT_rich Low_complexity Low_complexity 1 50 0 458 314 58 5 chr13 28756762 28756950 -90987948 + MIR SINE MIR 7 204 -58 184 348 87 26 chr13 28757138 28757253 -90987645 + MIR3 SINE MIR 64 185 -23 326 156 143 0 chr13 28758485 28758562 -90986336 + L1MC2 LINE L1 5375 5462 -871 4695 150 36 6 chr13 28758606 28759458 -90985440 + L1MC2 LINE L1 5456 6333 -11 183 80 0 0 chr13 28762699 28762724 -90982174 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 282 73 0 0 chr13 28762780 28762821 -90982077 + (TG)n Simple_repeat Simple_repeat 1 41 0 265 105 0 0 chr13 28762839 28762877 -90982021 + Alu SINE Alu 1 38 -265 351 0 0 0 chr13 28762917 28762956 -90981942 + (TG)n Simple_repeat Simple_repeat 2 40 0 222 91 0 0 chr13 28763000 28763033 -90981865 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr13 28763092 28763112 -90981786 + (TG)n Simple_repeat Simple_repeat 2 21 0 2140 99 14 7 chr13 28763132 28763448 -90981450 + AluSx SINE Alu 1 318 0 622 26 13 0 chr13 28763747 28763823 -90981075 - MADE1 DNA Mariner 0 80 4 916 127 35 14 chr13 28764751 28764893 -90980005 + AluSg/x SINE Alu 136 280 -32 2472 55 0 3 chr13 28766911 28767204 -90977694 - AluY SINE Alu -10 301 10 180 0 0 0 chr13 28767782 28767802 -90977096 + (A)n Simple_repeat Simple_repeat 1 20 0 432 228 187 53 chr13 28768326 28768738 -90976160 - L1MC4 LINE L1 -1 8041 7575 1430 293 42 15 chr13 28768760 28769503 -90975395 + L1ME3A LINE L1 4553 5315 -831 952 158 32 5 chr13 28769503 28769693 -90975205 + MER52A LTR ERV1 1510 1704 -51 481 230 102 40 chr13 28769707 28769933 -90974965 + L1ME3A LINE L1 5559 5798 -372 1934 148 33 41 chr13 28769933 28770241 -90974657 + MLT1B LTR MaLR 1 307 -83 17241 27 0 1 chr13 28770241 28773067 -90971831 + L1PA3 LINE L1 3326 6152 -3 1934 148 33 41 chr13 28773067 28773149 -90971749 + MLT1B LTR MaLR 307 388 -2 406 201 41 1 chr13 28773208 28773321 -90971577 + L1ME3A LINE L1 5833 5949 -221 2258 75 0 7 chr13 28774302 28774594 -90970304 + AluY SINE Alu 1 290 -21 476 215 185 8 chr13 28774841 28774971 -90969927 + MIR SINE MIR 100 252 -10 207 0 0 0 chr13 28775337 28775360 -90969538 + (TA)n Simple_repeat Simple_repeat 2 24 0 606 260 127 10 chr13 28775604 28776086 -90968812 + MLT1G1 LTR MaLR 5 583 -12 22 56 0 0 chr13 28776287 28776323 -90968575 + AT_rich Low_complexity Low_complexity 1 36 0 218 325 60 96 chr13 28776469 28776771 -90968127 + L2 LINE L2 2982 3272 0 2156 135 0 0 chr13 28777310 28777613 -90967285 + AluSx SINE Alu 1 303 -9 2052 139 3 7 chr13 28777820 28778130 -90966768 - AluSx SINE Alu -2 310 2 289 276 31 16 chr13 28778349 28778476 -90966422 + L1ME2 LINE L1 35 163 -6233 337 310 78 31 chr13 28778562 28778691 -90966207 + L1ME2 LINE L1 790 924 -5472 544 273 16 38 chr13 28778705 28778831 -90966067 - MLT1F LTR MaLR -8 534 412 1575 187 38 106 chr13 28778831 28778907 -90965991 + MLT2C2 LTR ERVL 1 81 -383 2076 146 3 0 chr13 28778907 28779208 -90965690 + AluSp SINE Alu 6 307 -6 1575 187 38 106 chr13 28779208 28779629 -90965269 + MLT2C2 LTR ERVL 81 464 0 544 273 16 38 chr13 28779629 28779685 -90965213 - MLT1F LTR MaLR -130 412 356 2501 235 64 50 chr13 28779706 28779943 -90964955 + L1ME2 LINE L1 2042 2274 -3941 2089 129 0 7 chr13 28779943 28780245 -90964653 + AluSx SINE Alu 1 300 -12 2501 235 64 50 chr13 28780245 28780307 -90964591 + L1ME2 LINE L1 2274 2334 -3881 2363 61 0 10 chr13 28780307 28780600 -90964298 + AluY SINE Alu 18 307 -4 2501 235 64 50 chr13 28780600 28781393 -90963505 + L1ME2 LINE L1 2334 3136 -3079 1590 173 52 28 chr13 28781393 28781682 -90963216 + AluJo SINE Alu 1 296 -16 2501 235 64 50 chr13 28781682 28781964 -90962934 + L1ME2 LINE L1 3136 3413 -2802 1081 259 149 55 chr13 28781968 28782517 -90962381 + MLT2F LTR ERVL 5 605 -58 2816 205 133 9 chr13 28782628 28782780 -90962118 + L1ME2 LINE L1 4870 5002 -1231 351 0 0 0 chr13 28782780 28782819 -90962079 + (CA)n Simple_repeat Simple_repeat 2 40 0 2816 205 133 9 chr13 28782819 28783860 -90961038 + L1ME2 LINE L1 5002 6223 -10 1892 175 3 0 chr13 28783927 28784224 -90960674 + AluSx SINE Alu 1 298 -14 189 107 0 0 chr13 28784882 28784910 -90959988 + (T)n Simple_repeat Simple_repeat 1 28 0 323 219 0 41 chr13 28785461 28785534 -90959364 - AluSg/x SINE Alu -14 288 219 1715 205 0 0 chr13 28785882 28786185 -90958713 - AluJo SINE Alu -9 303 1 1821 150 65 109 chr13 28786513 28786570 -90958328 - Charlie1b DNA MER1_type -2238 523 465 1805 177 7 7 chr13 28786570 28786864 -90958034 + AluJb SINE Alu 1 294 -18 1821 150 65 109 chr13 28786864 28787347 -90957551 - Charlie1b DNA MER1_type -2296 465 7 205 349 94 9 chr13 28787362 28787468 -90957430 + L2 LINE L2 3198 3312 -1 317 234 13 0 chr13 28787923 28788000 -90956898 + L1MC5 LINE L1 7840 7917 -44 25 0 0 0 chr13 28788641 28788666 -90956232 + AT_rich Low_complexity Low_complexity 1 25 0 270 252 171 0 chr13 28789856 28789979 -90954919 + L2 LINE L2 1577 1720 -1594 4202 159 36 20 chr13 28789979 28791334 -90953564 + L1MA4 LINE L1 4888 6298 -7 858 242 51 142 chr13 28791918 28792275 -90952623 + MER21B LTR ERV1 24 412 -451 2041 154 68 39 chr13 28792275 28792690 -90952208 - MSTB1 LTR MaLR -2 430 4 858 242 51 142 chr13 28792690 28792901 -90951997 + MER21B LTR ERV1 412 480 -383 1639 212 66 7 chr13 28792901 28793311 -90951587 - Tigger2a DNA MER2_type 0 434 1 858 242 51 142 chr13 28793311 28793520 -90951378 + MER21B LTR ERV1 480 706 -157 554 344 69 43 chr13 28793530 28794152 -90950746 + L2 LINE L2 2438 3082 -190 225 327 140 37 chr13 28794258 28794365 -90950533 + L2 LINE L2 3143 3260 -12 807 233 73 5 chr13 28795374 28795580 -90949318 - MIR SINE MIR -41 221 2 335 260 52 10 chr13 28796082 28796178 -90948720 + MIR3 SINE MIR 100 199 -9 2003 155 0 0 chr13 28796260 28796557 -90948341 + AluSx SINE Alu 1 297 -15 2290 107 0 0 chr13 28796818 28797116 -90947782 - AluSc SINE Alu -11 298 1 22 0 0 0 chr13 28798312 28798334 -90946564 + AT_rich Low_complexity Low_complexity 1 22 0 376 324 69 6 chr13 28799521 28799694 -90945204 - L2 LINE L2 -11 3302 3119 184 377 9 9 chr13 28799821 28799927 -90944971 - MIR SINE MIR -57 151 46 218 322 92 11 chr13 28800415 28800502 -90944396 - MIR SINE MIR -76 132 39 496 345 142 12 chr13 28800557 28800887 -90944011 + L3 LINE CR1 1081 1453 -124 5296 46 8 3 chr13 28801061 28801716 -90943182 - L1PA7 LINE L1 0 6154 5497 14811 78 15 6 chr13 28801716 28804006 -90940892 + L1PA7 LINE L1 3171 5475 -697 941 236 94 9 chr13 28804072 28804305 -90940593 - MIR SINE MIR 0 262 10 599 206 90 13 chr13 28804551 28804706 -90940192 - L2 LINE L2 -5 3308 3142 * 867 262 86 11 chr13 28804699 28804966 -90939932 - L2 LINE L2 -353 2961 2675 1850 225 92 26 chr13 28805607 28805776 -90939122 + L1ME3A LINE L1 5329 5485 -685 2213 91 0 39 chr13 28805776 28805910 -90938988 + AluSq SINE Alu 2 140 -173 2443 64 0 0 chr13 28805910 28806206 -90938692 + AluY SINE Alu 1 296 -15 2213 91 0 39 chr13 28806206 28806378 -90938520 + AluSq SINE Alu 140 296 -17 1850 225 92 26 chr13 28806378 28806940 -90937958 + L1ME3A LINE L1 5485 6075 -95 2313 208 94 3 chr13 28806961 28807544 -90937354 - MER63 DNA MER1_type 0 1060 425 2459 59 0 7 chr13 28807989 28808292 -90936606 + AluY SINE Alu 1 301 -10 1727 198 34 3 chr13 28808470 28808824 -90936074 + MLT1A1 LTR MaLR 1 365 0 238 351 53 0 chr13 28808870 28808964 -90935934 + L2 LINE L2 3210 3308 -5 366 330 144 9 chr13 28809205 28809420 -90935478 + MIR SINE MIR 4 247 -15 186 266 0 78 chr13 28809525 28809589 -90935309 + MIR SINE MIR 88 146 -62 226 279 73 30 chr13 28809607 28809772 -90935126 + MER112 DNA MER1_type 1 172 -88 2224 113 0 13 chr13 28809869 28810179 -90934719 - AluSx SINE Alu -6 306 1 1686 86 9 9 chr13 28810594 28810816 -90934082 + AluY SINE Alu 81 302 -9 432 263 132 0 chr13 28811036 28811188 -90933710 + MIR SINE MIR 77 248 -14 201 154 0 0 chr13 28812755 28812794 -90932104 + A-rich Low_complexity Low_complexity 2 40 0 189 107 0 0 chr13 28813823 28813851 -90931047 + (A)n Simple_repeat Simple_repeat 1 28 0 846 222 40 79 chr13 28815489 28815582 -90929316 - L1M4 LINE L1 -871 5275 5180 381 121 45 0 chr13 28815582 28815648 -90929250 - L1PA11 LINE L1 -3 6171 6103 846 222 40 79 chr13 28815648 28815982 -90928916 - L1M4 LINE L1 -966 5180 4865 2052 148 0 0 chr13 28816190 28816488 -90928410 + AluSx SINE Alu 1 298 -14 40581 34 23 2 chr13 28816491 28822515 -90922383 + L1PA3 LINE L1 1 6151 -4 216 122 0 0 chr13 28822518 28822559 -90922339 + (A)n Simple_repeat Simple_repeat 1 41 0 2295 107 0 3 chr13 28822861 28823169 -90921729 + AluSp SINE Alu 1 307 -6 1787 120 50 0 chr13 28823175 28823434 -90921464 - AluSx SINE Alu -40 272 1 22 0 0 0 chr13 28823516 28823538 -90921360 + AT_rich Low_complexity Low_complexity 1 22 0 26 88 0 0 chr13 28823568 28823636 -90921262 + AT_rich Low_complexity Low_complexity 1 68 0 1113 277 127 34 chr13 28824785 28825524 -90919374 + L1MEd LINE L1 442 1249 -5281 320 282 184 29 chr13 28825624 28825830 -90919068 + L1MEd LINE L1 1712 1949 -4591 985 241 44 102 chr13 28825979 28826186 -90918712 - L2 LINE L2 0 3313 3140 8471 21 14 276 chr13 28826186 28828059 -90916839 + SVA Other Other 3 1384 -2 985 241 44 102 chr13 28828059 28828262 -90916636 - L2 LINE L2 -173 3140 2927 623 265 71 10 chr13 28828242 28828438 -90916460 - MIR SINE MIR -3 259 52 * 2238 111 91 38 chr13 28828438 28828836 -90916062 - MSTA LTR MaLR -9 419 1 231 114 0 0 chr13 28828998 28829033 -90915865 + (A)n Simple_repeat Simple_repeat 1 35 0 2466 88 0 0 chr13 28829250 28829557 -90915341 + AluSg SINE Alu 1 307 -3 1529 262 112 9 chr13 28829998 28830560 -90914338 + L2 LINE L2 1359 1978 -1336 500 245 57 25 chr13 28830556 28830715 -90914183 + MIR SINE MIR 97 260 -2 * 205 306 102 20 chr13 28831092 28831190 -90913708 + L2 LINE L2 3183 3288 -25 242 314 118 0 chr13 28831228 28831330 -90913568 - MIR SINE MIR -65 143 30 1241 120 42 25 chr13 28831754 28831995 -90912903 + L1MA9 LINE L1 5544 5788 -524 396 138 0 0 chr13 28832014 28832079 -90912819 + (CA)n Simple_repeat Simple_repeat 1 65 0 385 171 267 0 chr13 28832079 28832184 -90912714 + L1MA9 LINE L1 5789 5921 -391 2267 162 32 5 chr13 28832218 28832620 -90912278 - MSTB LTR MaLR -13 413 1 2027 137 37 8 chr13 28832620 28833001 -90911897 + L1MA9 LINE L1 5916 6307 -5 21 0 0 0 chr13 28833332 28833353 -90911545 + AT_rich Low_complexity Low_complexity 1 21 0 189 74 0 0 chr13 28833649 28833676 -90911222 + (A)n Simple_repeat Simple_repeat 1 27 0 459 254 48 38 chr13 28833909 28834169 -90910729 + MIR SINE MIR 3 228 -34 487 270 72 2 chr13 28834457 28834609 -90910289 - MIR SINE MIR -62 146 10 2816 13 0 0 chr13 28834834 28835144 -90909754 + AluYa5 SINE Alu 1 310 -1 218 310 69 103 chr13 28836345 28836461 -90908437 - L2 LINE L2 -1 3271 3160 968 148 65 0 chr13 28838130 28838285 -90906613 + FRAM SINE Alu 1 40 0 577 209 19 0 chr13 28838897 28839002 -90905896 + U6 snRNA snRNA 1 107 0 23 54 0 0 chr13 28839157 28839194 -90905704 + AT_rich Low_complexity Low_complexity 1 37 0 1874 178 0 9 chr13 28839488 28839803 -90905095 + AluJo SINE Alu 1 312 0 2599 58 0 3 chr13 28839805 28840117 -90904781 + AluY SINE Alu 1 311 0 2363 102 3 0 chr13 28840120 28840424 -90904474 + AluSg SINE Alu 1 305 -5 1903 142 57 0 chr13 28841010 28841292 -90903606 - AluSx SINE Alu -14 298 1 1933 135 76 22 chr13 28842402 28842758 -90902140 + THE1C LTR MaLR 1 375 0 10632 111 35 36 chr13 28842758 28844338 -90900560 + THE1C-int LTR MaLR 1 1578 -2 2069 113 85 25 chr13 28844340 28844694 -90900204 + THE1C LTR MaLR 1 375 0 758 243 30 24 chr13 28844936 28844964 -90899934 + L1M4 LINE L1 3027 3053 -3093 12399 172 64 7 chr13 28844964 28847253 -90897645 - Cheshire DNA MER1_type 0 2420 1 758 243 30 24 chr13 28847253 28847553 -90897345 + L1M4 LINE L1 3053 3357 -2789 4345 207 48 84 chr13 28847715 28848886 -90896012 + L1M4 LINE L1 3626 4733 -1413 2187 112 3 0 chr13 28848886 28849181 -90895717 + AluSp SINE Alu 1 296 -17 4345 207 48 84 chr13 28849181 28849490 -90895408 + L1M4 LINE L1 4733 5052 -1094 988 237 57 16 chr13 28849509 28849754 -90895144 - LTR40a LTR ERVL -157 362 108 1872 242 117 31 chr13 28849756 28850433 -90894465 - HAL1 LINE L1 -678 1829 1095 679 186 138 38 chr13 28850437 28850647 -90894251 - L1ME3 LINE L1 -1 6161 5931 775 196 11 34 chr13 28850655 28850834 -90894064 - L1ME1 LINE L1 -5 6161 5987 11731 126 25 1 chr13 28850863 28852614 -90892284 + Tigger1 DNA MER2_type 1 1793 -625 829 163 0 0 chr13 28852618 28852747 -90892151 + FLAM_C SINE Alu 5 133 -10 1930 102 30 16 chr13 28852747 28853051 -90891847 + Tigger1 DNA MER2_type 1781 2088 -330 876 165 0 0 chr13 28853054 28853187 -90891711 + FLAM_C SINE Alu 1 133 0 958 144 0 50 chr13 28854143 28854303 -90890595 + FRAM SINE Alu 23 174 -2 223 177 32 0 chr13 28854305 28854367 -90890531 + GA-rich Low_complexity Low_complexity 3 66 0 2130 114 29 54 chr13 28854369 28854518 -90890380 + Tigger1 DNA MER2_type 2078 2229 -189 4613 115 45 0 chr13 28854518 28855160 -90889738 + L1PA16 LINE L1 5488 6158 -8 2130 114 29 54 chr13 28855160 28855360 -90889538 + Tigger1 DNA MER2_type 2229 2418 0 864 202 71 0 chr13 28855361 28855544 -90889354 - L1ME1 LINE L1 -220 5946 5751 841 240 128 33 chr13 28855717 28856109 -90888789 + L1MEd LINE L1 815 1243 -4876 422 284 51 18 chr13 28856142 28856365 -90888533 + L1MEd LINE L1 1359 1584 -906 321 296 80 0 chr13 28856366 28856491 -90888407 + MIR SINE MIR 56 190 -72 2199 99 7 7 chr13 28858218 28858521 -90886377 + AluSq SINE Alu 1 303 -10 508 282 120 37 chr13 28858567 28858808 -90886090 - MIR SINE MIR 0 262 2 1729 172 0 10 chr13 28859009 28859305 -90885593 - AluJb SINE Alu -17 295 3 976 172 12 0 chr13 28860552 28860715 -90884183 + FRAM SINE Alu 1 164 -12 2293 107 0 0 chr13 28861401 28861700 -90883198 - AluSc SINE Alu -10 299 1 691 328 103 44 chr13 28861719 28862372 -90882526 + L2 LINE L2 2131 2821 -493 248 344 42 52 chr13 28862398 28862610 -90882288 + L2 LINE L2 2872 3081 -191 452 270 163 19 chr13 28862624 28862839 -90882059 + MIR SINE MIR 13 258 -4 285 255 122 10 chr13 28862911 28863009 -90881889 + L2 LINE L2 3205 3313 0 23 54 0 0 chr13 28863386 28863423 -90881475 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr13 28864527 28864549 -90880349 + (CCG)n Simple_repeat Simple_repeat 1 22 0 359 317 118 14 chr13 28865192 28865413 -90879485 + MIR SINE MIR 16 259 -3 669 216 124 11 chr13 28865413 28865598 -90879300 + L1ME3 LINE L1 5949 6154 -8 287 244 81 12 chr13 28865630 28865716 -90879182 - MIR3 SINE MIR -6 202 111 2438 125 34 0 chr13 28866503 28866855 -90878043 + THE1B LTR MaLR 1 364 0 825 239 221 28 chr13 28868812 28869202 -90875696 + LTR50 LTR ERVL 1 465 -330 659 218 51 20 chr13 28869212 28869409 -90875489 + LTR33A LTR ERVL 319 521 -2 297 317 117 20 chr13 28871464 28871911 -90872987 - L1ME1 LINE L1 -217 5949 5446 1563 148 32 25 chr13 28872025 28872308 -90872590 - MLT1E LTR MaLR -2 591 307 597 292 67 46 chr13 28872454 28872800 -90872098 + L2 LINE L2 2920 3272 0 2643 51 0 3 chr13 28873065 28873377 -90871521 - AluY SINE Alu 0 311 1 508 253 39 19 chr13 28873989 28874143 -90870755 - MIR SINE MIR -53 209 53 277 337 12 12 chr13 28874170 28874256 -90870642 + MIR SINE MIR 30 115 -93 1751 126 52 15 chr13 28874274 28874545 -90870353 - AluJo SINE Alu -31 281 1 200 216 26 163 chr13 28874547 28874597 -90870301 + MIR SINE MIR 102 157 -105 2369 84 0 7 chr13 28874597 28874893 -90870005 + AluSc SINE Alu 1 294 -15 200 216 26 163 chr13 28874893 28874995 -90869903 + MIR SINE MIR 157 233 -29 766 217 29 11 chr13 28875209 28875384 -90869514 + MER5B DNA MER1_type 1 178 0 32 26 0 0 chr13 28875956 28875995 -90868903 + AT_rich Low_complexity Low_complexity 1 39 0 583 309 60 0 chr13 28877013 28877230 -90867668 + MIR SINE MIR 33 262 0 21 0 0 0 chr13 28877269 28877290 -90867608 + AT_rich Low_complexity Low_complexity 1 21 0 234 200 15 31 chr13 28878376 28878441 -90866457 + L1ME1 LINE L1 6110 6178 0 180 211 0 26 chr13 28878750 28878788 -90866110 + L3 LINE CR1 1521 1557 -20 392 197 114 68 chr13 28878867 28878999 -90865899 + MER5A DNA MER1_type 3 140 -49 2305 99 0 3 chr13 28879421 28879724 -90865174 - AluSx SINE Alu -10 302 1 244 241 13 38 chr13 28879790 28879869 -90865029 - L3 LINE CR1 -43 1534 1458 303 306 73 114 chr13 28879983 28880326 -90864572 + L2 LINE L2 2944 3272 0 318 343 33 33 chr13 28880698 28880908 -90863990 - L2 LINE L2 -674 2640 2431 255 284 52 52 chr13 28880957 28881073 -90863825 + L2 LINE L2 3153 3268 -4 180 77 0 0 chr13 28881296 28881322 -90863576 + (T)n Simple_repeat Simple_repeat 1 26 0 272 296 0 23 chr13 28882277 28882365 -90862533 + L1ME LINE L1 376 461 -5935 1559 222 67 61 chr13 28882972 28883891 -90861007 + L1ME LINE L1 789 1882 -4524 649 239 32 21 chr13 28883900 28884088 -90860810 + L1ME1 LINE L1 5873 6062 -104 2176 88 17 10 chr13 28884867 28885162 -90859736 + AluY SINE Alu 1 297 -14 203 330 46 28 chr13 28885182 28885291 -90859607 + L2 LINE L2 3203 3313 0 387 267 43 0 chr13 28885676 28885792 -90859106 - MER103 DNA DNA -10 156 36 232 121 0 0 chr13 28885887 28885920 -90858978 - MER3 DNA MER1_type -160 49 17 504 258 88 32 chr13 28885924 28886141 -90858757 - L1ME2 LINE L1 -147 6017 5789 183 113 57 0 chr13 28886162 28886215 -90858683 + (TA)n Simple_repeat Simple_repeat 1 56 0 1402 167 13 0 chr13 28886220 28886454 -90858444 - L1ME2 LINE L1 -378 5786 5550 306 241 0 0 chr13 28886505 28886559 -90858339 + MIR3 SINE MIR 132 185 -23 1933 136 0 43 chr13 28887096 28887420 -90857478 - AluJb SINE Alu -2 310 1 1745 221 42 53 chr13 28887420 28887731 -90857167 + LTR40a LTR ERVL 31 337 -182 2788 10 0 0 chr13 28887731 28888033 -90856865 - AluYa5 SINE Alu -9 302 1 1745 221 42 53 chr13 28888033 28888215 -90856683 + LTR40a LTR ERVL 337 519 0 1652 164 35 60 chr13 28889446 28889843 -90855055 + MLT1B LTR MaLR 4 390 0 516 279 152 25 chr13 28890374 28890657 -90854241 + L1MC5 LINE L1 7604 7922 -39 741 179 8 22 chr13 28890666 28890800 -90854098 + FLAM_A SINE Alu 1 132 -1 361 259 56 1 chr13 28890858 28891016 -90853882 - MER69 DNA AcHobo 0 2526 1 801 228 23 66 chr13 28891069 28891372 -90853526 - L1MC5 LINE L1 -30 7931 7642 1418 197 65 49 chr13 28891481 28891912 -90852986 - L1MC5 LINE L1 -335 7626 7189 228 260 26 26 chr13 28892599 28892676 -90852222 + MLT1L LTR MaLR 1 77 -538 352 204 133 91 chr13 28892748 28893006 -90851892 + MLT1J LTR MaLR 234 440 -71 2089 106 13 3 chr13 28893142 28893443 -90851455 + AluSx SINE Alu 1 304 -8 408 283 22 0 chr13 28893443 28893535 -90851363 + L1MC4 LINE L1 6615 6708 -1334 352 193 2 0 chr13 28893991 28894062 -90850836 + HsTC2 DNA Tc2 17 88 -1810 415 166 237 43 chr13 28894156 28894295 -90850603 + MER103 DNA DNA 1 166 0 266 222 19 0 chr13 28894804 28894858 -90850040 + MER5B DNA MER1_type 121 175 -3 310 275 132 47 chr13 28895027 28895285 -90849613 - L2 LINE L2 -839 2475 2196 526 301 29 1 chr13 28895347 28895543 -90849355 + MIR SINE MIR 30 229 -33 197 374 60 40 chr13 28895706 28895955 -90848943 + L3 LINE CR1 343 596 -981 209 271 29 0 chr13 28896303 28896373 -90848525 + GA-rich Low_complexity Low_complexity 2 73 0 439 247 10 10 chr13 28896460 28896557 -90848341 - L2 LINE L2 -11 3302 3206 419 277 258 37 chr13 28896560 28896936 -90847962 + L2 LINE L2 2091 2549 -765 1829 176 6 35 chr13 28897247 28897594 -90847304 - MER58B DNA MER1_type -3 338 2 203 328 82 70 chr13 28898048 28898219 -90846679 + L3b LINE CR1 1397 1569 -14 388 274 72 13 chr13 28899375 28899528 -90845370 - MIR SINE MIR -80 182 21 531 277 107 81 chr13 28900035 28900382 -90844516 - L1ME4a LINE L1 -60 6061 5706 249 83 0 0 chr13 28900713 28900749 -90844149 + (TCTCC)n Simple_repeat Simple_repeat 4 39 0 1733 194 0 0 chr13 28900754 28901064 -90843834 - AluJb SINE Alu -2 310 1 810 258 92 50 chr13 28901151 28901287 -90843611 + L1ME4a LINE L1 5479 5608 -513 1859 122 3 11 chr13 28901287 28901607 -90843291 + AluSx SINE Alu 1 318 0 810 258 92 50 chr13 28901607 28902024 -90842874 + L1ME4a LINE L1 5608 6056 -65 1536 209 111 55 chr13 28902537 28903050 -90841848 - MLT1F LTR MaLR 0 542 1 2377 143 27 48 chr13 28903906 28904347 -90840551 + MSTB1 LTR MaLR 1 432 0 1101 136 0 6 chr13 28904854 28905016 -90839882 + FRAM SINE Alu 4 164 -2 1959 131 24 0 chr13 28905278 28905569 -90839329 - AluSx SINE Alu -14 298 1 591 276 86 35 chr13 28905850 28906082 -90838816 + MIR SINE MIR 19 262 0 248 136 0 0 chr13 28906226 28906270 -90838628 + MADE1 DNA Mariner 1 44 -36 2206 93 0 0 chr13 28906290 28906580 -90838318 - AluSx SINE Alu -22 290 1 196 311 19 66 chr13 28906891 28906997 -90837901 + MIR SINE MIR 117 217 -45 1857 133 30 13 chr13 28907151 28907451 -90837447 + AluSx SINE Alu 1 305 -7 1696 204 31 64 chr13 28907866 28908021 -90836877 - MER63B DNA MER1_type -626 436 277 2008 117 3 0 chr13 28908021 28908324 -90836574 + AluSx SINE Alu 1 304 0 1696 204 31 64 chr13 28908324 28908439 -90836459 - MER63B DNA MER1_type -785 277 160 1721 167 101 12 chr13 28908439 28908494 -90836404 - MER47A DNA MER2_type -1957 366 317 2084 141 0 3 chr13 28908494 28908807 -90836091 + AluSx SINE Alu 1 312 0 1721 167 101 12 chr13 28908807 28909087 -90835811 - MER47A DNA MER2_type -2006 317 1 1696 204 31 64 chr13 28909087 28909264 -90835634 - MER63B DNA MER1_type -902 160 1 490 249 98 108 chr13 28909266 28909675 -90835223 + HAL1 LINE L1 101 505 -2002 1029 189 159 0 chr13 28909750 28909983 -90834915 - AluJo SINE Alu -38 274 5 1337 245 153 30 chr13 28910007 28910819 -90834079 + HAL1 LINE L1 579 2172 -335 436 215 8 99 chr13 28910844 28911031 -90833867 + MER104 DNA Tc2 14 177 -3 363 248 137 72 chr13 28911067 28911329 -90833569 + HAL1 LINE L1 2227 2505 -2 1684 141 19 56 chr13 28911341 28911661 -90833237 + AluSx SINE Alu 1 308 -4 318 230 40 0 chr13 28913698 28913772 -90831126 - AluJ/FRAM SINE Alu 0 302 226 807 153 73 0 chr13 28913775 28913912 -90830986 + AluJo/FRAM SINE Alu 136 282 -30 1727 158 3 26 chr13 28913925 28914236 -90830662 + AluJb SINE Alu 1 304 -8 250 175 0 0 chr13 28914237 28914277 -90830621 - AluJo/FLAM SINE Alu -178 124 85 1181 180 14 9 chr13 28914278 28914495 -90830403 - AluJo SINE Alu -94 218 1 219 36 0 0 chr13 28914749 28914777 -90830121 + (CAGCC)n Simple_repeat Simple_repeat 5 32 0 357 328 55 0 chr13 28915003 28915131 -90829767 + L3 LINE CR1 1191 1325 -252 1823 158 0 3 chr13 28915231 28915528 -90829370 + AluJb SINE Alu 1 296 -16 297 209 0 0 chr13 28915529 28915596 -90829302 + (CATA)n Simple_repeat Simple_repeat 2 68 0 799 280 76 20 chr13 28915694 28916051 -90828847 - L1MC4a LINE L1 -1858 5950 5574 373 345 107 10 chr13 28916055 28916252 -90828646 + L3 LINE CR1 1351 1566 -11 324 103 73 0 chr13 28916271 28916339 -90828559 - L1MA8 LINE L1 0 6291 6219 545 327 75 53 chr13 28916802 28917163 -90827735 - L3 LINE CR1 -128 1449 1081 266 202 183 39 chr13 28917519 28917623 -90827275 + LTR67 LTR ERVL 432 550 -7 208 337 48 12 chr13 28917665 28917748 -90827150 - L3 LINE CR1 -647 930 845 2154 114 3 0 chr13 28918533 28918839 -90826059 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr13 28918900 28918925 -90825973 + AT_rich Low_complexity Low_complexity 1 25 0 1303 157 124 15 chr13 28919523 28919797 -90825101 + AluJo SINE Alu 1 304 -8 297 304 62 9 chr13 28920452 28920564 -90824334 - MIR SINE MIR -94 168 51 661 254 98 5 chr13 28920569 28920774 -90824124 - L1ME2 LINE L1 -1 6163 5940 301 271 35 12 chr13 28921582 28921667 -90823231 + MER63 DNA MER1_type 1 713 -349 24 0 0 0 chr13 28922390 28922414 -90822484 + AT_rich Low_complexity Low_complexity 1 24 0 1221 156 24 0 chr13 28922414 28922619 -90822279 - L1MA6 LINE L1 -4 6296 6087 225 255 20 0 chr13 28923052 28923103 -90821795 - L2 LINE L2 -86 3227 3176 * 641 243 101 77 chr13 28923095 28923342 -90821556 - MIR SINE MIR 0 262 10 304 226 32 0 chr13 28923474 28923536 -90821362 + L3 LINE CR1 1423 1486 -91 2026 137 0 3 chr13 28923635 28923942 -90820956 - AluSx SINE Alu -6 306 1 234 0 0 0 chr13 28924079 28924105 -90820793 + (TA)n Simple_repeat Simple_repeat 2 27 0 1947 124 7 10 chr13 28924578 28924877 -90820021 + AluSx SINE Alu 1 298 -14 2292 100 0 0 chr13 28925383 28925693 -90819205 + AluSx SINE Alu 1 310 -2 374 370 93 18 chr13 28926116 28926513 -90818385 + L2 LINE L2 2289 2715 -599 850 191 6 0 chr13 28926513 28926670 -90818228 + FRAM SINE Alu 1 157 -19 1962 130 3 3 chr13 28926761 28927069 -90817829 + AluSx SINE Alu 1 308 -4 1111 200 74 13 chr13 28928153 28928383 -90816515 + MIR SINE MIR 19 262 0 229 167 24 0 chr13 28928418 28928460 -90816438 - MIR SINE MIR -117 145 103 2359 54 0 7 chr13 28929986 28930283 -90814615 + AluY SINE Alu 1 295 -16 260 222 197 34 chr13 28931148 28931265 -90813633 + L2 LINE L2 3161 3296 -17 21 0 0 0 chr13 28931267 28931288 -90813610 + AT_rich Low_complexity Low_complexity 1 21 0 238 279 233 16 chr13 28931494 28931623 -90813275 - MIR SINE MIR -72 190 34 486 79 0 0 chr13 28931831 28931907 -90812991 + (TC)n Simple_repeat Simple_repeat 1 76 0 1792 124 3 35 chr13 28931912 28932202 -90812696 - AluJo SINE Alu -31 281 1 2840 137 22 26 chr13 28932326 28932817 -90812081 - Tigger5 DNA MER2_type 0 2323 1835 576 228 16 79 chr13 28932815 28932952 -90811946 - Tigger5 DNA MER2_type -2103 220 97 * 2249 87 0 3 chr13 28932952 28933250 -90811648 - AluSc SINE Alu -12 297 1 576 228 16 79 chr13 28933250 28933301 -90811597 - Tigger5 DNA MER2_type -2226 97 44 274 216 99 99 chr13 28934218 28934317 -90810581 + LTR67 LTR ERVL 373 474 -83 1039 178 50 0 chr13 28934317 28934497 -90810401 + MER5A DNA MER1_type 1 189 0 274 216 99 99 chr13 28934497 28934578 -90810320 + LTR67 LTR ERVL 473 553 -4 237 229 200 0 chr13 28934689 28934829 -90810069 - Charlie7 DNA MER1_type -2 2610 2443 216 200 0 0 chr13 28935024 28935069 -90809829 + (TAA)n Simple_repeat Simple_repeat 2 46 0 417 222 214 0 chr13 28935095 28935221 -90809677 - MIR SINE MIR -71 191 39 395 355 52 0 chr13 28935235 28935407 -90809491 - L2 LINE L2 -863 2451 2271 637 211 9 0 chr13 28935509 28935623 -90809275 + FRAM SINE Alu 1 115 -61 272 133 0 0 chr13 28935696 28935741 -90809157 + Alu SINE Alu 253 297 -5 629 272 36 44 chr13 28935905 28936155 -90808743 + MIR SINE MIR 15 262 0 3061 204 44 29 chr13 28936481 28937371 -90807527 + L1ME1 LINE L1 4697 5593 -621 1999 120 0 26 chr13 28937371 28937679 -90807219 + AluSx SINE Alu 1 300 -12 3061 204 44 29 chr13 28937679 28937855 -90807043 + L1ME1 LINE L1 5593 5765 -449 1113 185 186 42 chr13 28937855 28938272 -90806626 - MER66B LTR ERV1 0 486 97 1250 214 80 29 chr13 28938306 28938655 -90806243 + L1ME1 LINE L1 5744 6110 -56 1849 174 27 49 chr13 28938655 28938689 -90806209 - MLT1B LTR MaLR -31 359 326 1938 112 25 0 chr13 28938689 28938967 -90805931 - AluSx SINE Alu -27 285 1 1849 174 27 49 chr13 28938967 28939299 -90805599 - MLT1B LTR MaLR -64 326 1 1870 114 26 49 chr13 28939489 28939769 -90805129 + AluSx SINE Alu 5 287 -25 226 0 0 0 chr13 28939769 28939794 -90805104 + (TAAA)n Simple_repeat Simple_repeat 2 136 0 1870 114 26 49 chr13 28939794 28939820 -90805078 + AluSx SINE Alu 287 312 0 485 323 58 35 chr13 28940651 28940877 -90804021 - MIR SINE MIR -12 250 20 2232 89 0 0 chr13 28941009 28941300 -90803598 - AluSx SINE Alu -21 291 1 385 283 57 25 chr13 28941368 28941527 -90803371 + L1MD3 LINE L1 7808 7971 -24 1234 66 0 0 chr13 28941529 28941680 -90803218 + AluSq/x SINE Alu 1 151 -162 7109 50 5 8 chr13 28941783 28943231 -90801667 + L1PA6 LINE L1 4674 6144 -10 718 160 0 73 chr13 28943523 28943673 -90801225 + FLAM_C SINE Alu 5 143 0 377 45 0 0 chr13 28944049 28944093 -90800805 + AluSp SINE Alu 108 151 -152 243 88 0 0 chr13 28944094 28944128 -90800770 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2107 116 0 3 chr13 28944135 28944438 -90800460 - AluSx SINE Alu -9 303 2 279 237 26 0 chr13 28944519 28944595 -90800303 + MIR SINE MIR 44 121 -87 3264 258 125 28 chr13 28944672 28946043 -90798855 + HAL1 LINE L1 1 1504 -1003 1694 159 3 41 chr13 28946060 28946424 -90798474 + AluJo SINE Alu 1 352 0 629 153 10 0 chr13 28946514 28946612 -90798286 + FLAM_C SINE Alu 24 122 -21 25 31 0 0 chr13 28946613 28946645 -90798253 + AT_rich Low_complexity Low_complexity 1 32 0 2586 35 0 9 chr13 28946648 28946966 -90797932 + AluYb8 SINE Alu 1 315 -3 207 0 0 0 chr13 28946982 28947005 -90797893 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2093 107 3 0 chr13 28947161 28947470 -90797428 + AluSp SINE Alu 1 310 0 1995 142 3 0 chr13 28947566 28947875 -90797023 + AluSq SINE Alu 1 310 -3 248 77 26 0 chr13 28947875 28947914 -90796984 + (GGA)n Simple_repeat Simple_repeat 1 40 0 1422 236 60 21 chr13 28947914 28948295 -90796603 + L1MD3 LINE L1 7591 7986 -9 2061 108 24 0 chr13 28949742 28950029 -90794869 + AluSx SINE Alu 3 296 -16 1794 166 0 3 chr13 28950154 28950461 -90794437 + AluJb SINE Alu 1 306 -6 1919 157 0 6 chr13 28950610 28950923 -90793975 - AluSx SINE Alu -1 311 1 621 214 132 6 chr13 28950924 28951083 -90793815 - MIR SINE MIR -76 186 8 377 205 154 0 chr13 28951342 28951420 -90793478 + MER20 DNA MER1_type 1 90 -129 555 153 0 0 chr13 28951428 28951513 -90793385 - AluS SINE Alu -226 86 2 21 0 0 0 chr13 28951515 28951536 -90793362 + AT_rich Low_complexity Low_complexity 1 21 0 327 119 0 0 chr13 28951966 28952008 -90792890 + MER20 DNA MER1_type 178 219 0 412 309 50 40 chr13 28952698 28952899 -90791999 + MIR SINE MIR 35 237 -25 1640 267 127 24 chr13 28953166 28953478 -90791420 + MER69 DNA AcHobo 2 280 -2246 1721 172 3 7 chr13 28953478 28953775 -90791123 - AluJb SINE Alu -14 298 3 1640 267 127 24 chr13 28953775 28954054 -90790844 + MER69 DNA AcHobo 280 654 -1872 413 191 134 9 chr13 28954053 28954243 -90790655 + MER69 DNA AcHobo 2238 2525 -1 * 1835 98 68 11 chr13 28954268 28954534 -90790364 - AluSx SINE Alu -13 299 19 22 0 0 0 chr13 28956306 28956328 -90788570 + AT_rich Low_complexity Low_complexity 1 22 0 938 181 62 5 chr13 28956790 28956911 -90787987 - L1PA13 LINE L1 0 6163 6043 2250 133 60 85 chr13 28956911 28957394 -90787504 - L1MB3 LINE L1 -158 6025 5555 1323 182 30 34 chr13 28957394 28957690 -90787208 - AluJo SINE Alu -17 295 1 2219 75 3 36 chr13 28957937 28958244 -90786654 + AluSx SINE Alu 1 297 -15 439 290 32 0 chr13 28959358 28959482 -90785416 + L2 LINE L2 3186 3313 0 867 120 0 0 chr13 28959565 28959682 -90785216 - FLAM_C SINE Alu -16 117 1 2145 97 0 10 chr13 28959901 28960200 -90784698 - AluSq SINE Alu -17 296 1 187 30 30 30 chr13 28960285 28960318 -90784580 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1949 89 71 0 chr13 28960846 28961115 -90783783 + AluSc SINE Alu 5 292 -17 710 183 15 22 chr13 28962194 28962331 -90782567 + FLAM_A SINE Alu 1 136 -6 229 114 45 0 chr13 28962739 28962783 -90782115 - L2 LINE L2 0 3313 3268 438 297 163 29 chr13 28964210 28964419 -90780479 + MIR SINE MIR 16 252 -10 22 0 0 0 chr13 28964870 28964892 -90780006 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 28964957 28964979 -90779919 + AT_rich Low_complexity Low_complexity 1 22 0 2124 113 0 0 chr13 28965097 28965423 -90779475 + AluSg SINE Alu 1 326 0 1140 144 8 107 chr13 28966168 28966411 -90778487 - MER20 DNA MER1_type 0 219 1 264 59 0 0 chr13 28966590 28966624 -90778274 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2003 202 62 9 chr13 28967116 28967537 -90777361 - L1MD3 LINE L1 -13 7982 7540 304 197 91 0 chr13 28967559 28967625 -90777273 + MER112 DNA MER1_type 79 150 -110 2089 138 0 0 chr13 28967625 28967936 -90776962 - AluSx SINE Alu -1 311 1 1130 104 0 44 chr13 28967938 28968121 -90776777 + AluSq SINE Alu 98 272 -41 322 239 109 0 chr13 28968650 28968742 -90776156 - L2 LINE L2 -5 3267 3166 427 283 28 102 chr13 28968910 28969087 -90775811 - L2 LINE L2 -1 3271 3108 21 0 0 0 chr13 28969940 28969961 -90774937 + AT_rich Low_complexity Low_complexity 1 21 0 1845 125 11 3 chr13 28969962 28970249 -90774649 + AluSx SINE Alu 1 289 -23 446 48 0 16 chr13 28970254 28970316 -90774582 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 431 298 232 33 chr13 28970821 28971123 -90773775 - L3 LINE CR1 -7 1570 1209 2149 116 3 0 chr13 28971174 28971477 -90773421 + AluSx SINE Alu 1 304 -8 1783 143 0 31 chr13 28971488 28971807 -90773091 + AluJb SINE Alu 1 310 0 662 269 126 62 chr13 28971841 28972231 -90772667 - L2 LINE L2 -76 3237 2823 774 272 20 15 chr13 28972258 28972453 -90772445 - L3 LINE CR1 -399 1178 983 2196 78 0 32 chr13 28972515 28972823 -90772075 - AluSx SINE Alu -6 306 9 564 184 123 18 chr13 28972987 28973101 -90771797 - FLAM_A SINE Alu -7 126 1 1123 313 104 24 chr13 28973160 28973629 -90771269 - L3 LINE CR1 -708 869 363 2418 71 0 3 chr13 28973847 28974157 -90770741 - AluY SINE Alu -2 309 1 1690 130 75 77 chr13 28974328 28974704 -90770194 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr13 28974708 28974744 -90770154 + AT_rich Low_complexity Low_complexity 1 36 0 5889 121 12 33 chr13 28974744 28975766 -90769132 - L1PA16 LINE L1 -9 6157 5155 2415 161 47 5 chr13 28975792 28976240 -90768658 - Charlie1b DNA MER1_type -22 501 35 2235 88 0 26 chr13 28976720 28977027 -90767871 + AluSx SINE Alu 1 299 -13 2033 95 28 0 chr13 28977038 28977322 -90767576 + AluSq SINE Alu 3 294 -19 491 307 0 7 chr13 28978504 28978644 -90766254 + MIR3 SINE MIR 63 201 -7 448 300 122 6 chr13 28980533 28980713 -90764185 + MIR SINE MIR 23 223 -39 205 220 0 51 chr13 28981439 28981498 -90763400 + G-rich Low_complexity Low_complexity 3 58 0 429 104 0 0 chr13 28982263 28982340 -90762558 + (CAGCC)n Simple_repeat Simple_repeat 3 79 0 216 163 0 0 chr13 28982345 28982388 -90762510 + (CGG)n Simple_repeat Simple_repeat 2 44 0 1684 134 57 3 chr13 28983299 28983582 -90761316 + AluJb SINE Alu 1 298 -14 470 271 132 40 chr13 28983918 28984221 -90760677 + MER102b DNA MER1_type 1 331 -10 200 351 107 18 chr13 28984483 28984651 -90760247 + MIR SINE MIR 21 203 -59 254 219 27 41 chr13 28984684 28984757 -90760141 + MIR SINE MIR 185 256 -6 1326 156 37 12 chr13 28984783 28985026 -90759872 - AluJo SINE Alu -61 251 3 232 270 40 40 chr13 28985061 28985135 -90759763 - MER5A DNA MER1_type -69 120 47 2042 94 35 3 chr13 28985711 28985999 -90758899 + AluSq SINE Alu 1 297 -16 2208 109 0 0 chr13 28985999 28986303 -90758595 + AluSq SINE Alu 1 304 -9 426 218 65 57 chr13 28986353 28986477 -90758421 - L2 LINE L2 -19 3294 3170 1939 124 0 13 chr13 28987488 28987787 -90757111 + AluSx SINE Alu 1 295 -17 1914 105 0 64 chr13 28988959 28989273 -90755625 + AluSq SINE Alu 1 294 -19 21 57 0 0 chr13 28989955 28989990 -90754908 + AT_rich Low_complexity Low_complexity 1 35 0 1871 136 19 32 chr13 28992183 28992493 -90752405 - AluJo SINE Alu -1 311 6 1657 204 0 17 chr13 28992985 28993284 -90751614 + AluJb SINE Alu 19 312 0 2433 94 0 0 chr13 28993342 28993649 -90751249 + AluSg SINE Alu 1 307 -3 255 339 52 0 chr13 28993698 28993813 -90751085 - L2 LINE L2 0 3272 3152 1876 168 0 9 chr13 28994009 28994315 -90750583 + AluJo SINE Alu 1 305 -7 354 23 0 0 chr13 28994315 28994358 -90750540 + (CCA)n Simple_repeat Simple_repeat 1 43 0 2215 114 3 0 chr13 28994671 28994970 -90749928 - AluSx SINE Alu -12 300 1 317 283 61 0 chr13 28995069 28995168 -90749730 + MIR3 SINE MIR 95 199 -9 200 246 18 0 chr13 28995448 28995505 -90749393 + (TA)n Simple_repeat Simple_repeat 1 58 0 242 246 35 0 chr13 28995560 28995617 -90749281 - MIR SINE MIR -10 252 194 2136 118 0 7 chr13 28996438 28996735 -90748163 + AluSx SINE Alu 1 295 -17 1703 166 13 23 chr13 28997955 28998257 -90746641 - AluJb SINE Alu -13 299 1 1033 154 59 0 chr13 28998257 28998426 -90746472 - FRAM SINE Alu -3 173 1 2032 152 0 0 chr13 28999195 28999497 -90745401 + AluJb SINE Alu 1 302 -10 647 251 31 44 chr13 28999647 28999874 -90745024 + MER58A DNA MER1_type 1 224 0 547 209 27 0 chr13 29000081 29000191 -90744707 - MER81 DNA DNA 0 114 2 438 296 89 12 chr13 29000196 29000365 -90744533 + MIR SINE MIR 11 192 -70 740 154 0 41 chr13 29000372 29000495 -90744403 + FLAM_C SINE Alu 2 119 -24 824 83 16 0 chr13 29000495 29000616 -90744282 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2043 115 27 7 chr13 29000761 29001057 -90743841 + AluSx SINE Alu 1 302 -10 2332 92 20 3 chr13 29001845 29002148 -90742750 + AluSg SINE Alu 1 308 -2 529 214 103 7 chr13 29002451 29002596 -90742302 + MER5B DNA MER1_type 1 159 -19 505 113 0 0 chr13 29002610 29002690 -90742208 + FLAM_C SINE Alu 64 143 0 636 259 21 51 chr13 29002702 29002938 -90741960 - MIR SINE MIR -3 259 31 26 0 0 0 chr13 29003425 29003451 -90741447 + AT_rich Low_complexity Low_complexity 1 26 0 1818 157 13 13 chr13 29003497 29003797 -90741101 - AluJo SINE Alu -12 300 1 1566 69 5 0 chr13 29004801 29004990 -90739908 - AluSq SINE Alu -123 190 1 2278 90 7 7 chr13 29004991 29005291 -90739607 - AluSx SINE Alu -12 300 1 333 256 120 73 chr13 29006164 29006398 -90738500 + L2 LINE L2 3032 3276 -37 2648 58 3 0 chr13 29006683 29006995 -90737903 + AluSq SINE Alu 1 313 0 1082 184 0 0 chr13 29007317 29007491 -90737407 - FAM SINE Alu -1 174 1 193 28 0 56 chr13 29007961 29007997 -90736901 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2259 99 0 3 chr13 29008016 29008300 -90736598 - AluSq SINE Alu -30 283 1 824 218 0 24 chr13 29009066 29009236 -90735662 - FRAM SINE Alu 0 166 1 1905 156 7 0 chr13 29009271 29009586 -90735312 + AluJb SINE Alu 1 317 0 2279 96 0 25 chr13 29009787 29010101 -90734797 + AluSq SINE Alu 1 306 -7 1666 141 15 27 chr13 29010278 29010540 -90734358 + AluJo SINE Alu 37 295 -17 2132 130 0 3 chr13 29010726 29011033 -90733865 - AluSx SINE Alu -6 306 1 2194 92 0 7 chr13 29011147 29011469 -90733429 - AluSc SINE Alu 0 320 1 2201 110 7 3 chr13 29011590 29011898 -90733000 + AluSx SINE Alu 1 309 -3 469 245 75 107 chr13 29012565 29012860 -90732038 + L1ME4a LINE L1 5553 5856 -265 2274 92 3 0 chr13 29012860 29013164 -90731734 - AluSq SINE Alu 0 305 1 469 245 75 107 chr13 29013164 29013175 -90731723 + L1ME4a LINE L1 5856 5866 -255 1921 166 0 0 chr13 29013175 29013465 -90731433 - AluSx SINE Alu -22 290 1 469 245 75 107 chr13 29013465 29013585 -90731313 + L1ME4a LINE L1 5866 5967 -154 * 3005 157 26 8 chr13 29013579 29014109 -90730789 + L1MB4 LINE L1 5286 5825 -355 2374 62 41 0 chr13 29014111 29014402 -90730496 + AluY SINE Alu 1 303 -8 268 119 0 0 chr13 29014402 29014444 -90730454 + L1MB5 LINE L1 6133 6174 0 201 119 48 0 chr13 29014446 29014488 -90730410 + (TA)n Simple_repeat Simple_repeat 1 44 0 217 350 8 16 chr13 29015029 29015152 -90729746 + MIR3 SINE MIR 81 202 -6 2501 54 7 3 chr13 29015686 29015983 -90728915 - AluY SINE Alu -13 298 1 355 151 47 70 chr13 29016420 29016506 -90728392 + AluJ/FLAM SINE Alu 1 84 -218 599 126 0 0 chr13 29016773 29016892 -90728006 + (G)n Simple_repeat Simple_repeat 1 119 0 521 222 115 13 chr13 29017362 29017607 -90727291 + L1P5 LINE L1 5572 5848 -308 812 151 0 8 chr13 29017742 29017868 -90727030 - FLAM_C SINE Alu -7 126 2 559 208 30 0 chr13 29018017 29018118 -90726780 + FLAM_A SINE Alu 1 104 -38 2533 67 0 0 chr13 29018916 29019216 -90725682 - AluY SINE Alu -11 300 1 365 169 0 11 chr13 29021961 29022050 -90722848 + CT-rich Low_complexity Low_complexity 2 89 0 23 33 0 0 chr13 29024275 29024305 -90720593 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 29025164 29025186 -90719712 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 29025238 29025266 -90719632 + GC_rich Low_complexity Low_complexity 1 28 0 261 109 0 0 chr13 29025352 29025398 -90719500 + (TG)n Simple_repeat Simple_repeat 1 46 0 28 0 0 0 chr13 29025405 29025433 -90719465 + GC_rich Low_complexity Low_complexity 1 28 0 180 117 33 33 chr13 29025740 29025800 -90719098 + (CCG)n Simple_repeat Simple_repeat 3 62 0 36 0 0 0 chr13 29025854 29025890 -90719008 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr13 29026073 29026115 -90718783 + GC_rich Low_complexity Low_complexity 1 42 0 542 209 58 14 chr13 29028318 29028457 -90716441 + MIR SINE MIR 1 145 -117 2246 91 7 0 chr13 29028613 29028925 -90715973 - AluSq SINE Alu 0 313 1 2126 130 10 0 chr13 29029255 29029562 -90715336 - AluSx SINE Alu -2 310 1 1820 133 0 68 chr13 29029831 29030004 -90714894 - AluJb SINE Alu -10 302 119 189 0 0 0 chr13 29030004 29030025 -90714873 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2199 93 0 0 chr13 29030025 29030304 -90714594 - AluSc SINE Alu -30 279 1 1820 133 0 68 chr13 29030304 29030451 -90714447 - AluJb SINE Alu -191 121 3 571 142 239 0 chr13 29030453 29030566 -90714332 - AluJo SINE Alu -171 141 2 311 239 14 0 chr13 29030575 29030646 -90714252 + L2 LINE L2 3201 3272 0 2371 110 0 0 chr13 29031013 29031322 -90713576 - AluSx SINE Alu -1 311 3 216 0 0 0 chr13 29031324 29031348 -90713550 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 26 23 0 23 chr13 29031348 29031366 -90713532 + AT_rich Low_complexity Low_complexity 1 18 -25 2011 129 25 0 chr13 29031366 29031645 -90713253 - AluSg SINE Alu -24 286 1 26 23 0 23 chr13 29031645 29031670 -90713228 + AT_rich Low_complexity Low_complexity 18 43 0 2377 92 0 22 chr13 29031713 29032030 -90712868 - AluSq SINE Alu -3 310 1 2570 48 10 7 chr13 29032030 29032340 -90712558 - AluSq SINE Alu -2 311 1 26 23 0 23 chr13 29032934 29032959 -90711939 + AT_rich Low_complexity Low_complexity 1 26 -17 2040 125 25 0 chr13 29032959 29033238 -90711660 + AluSg SINE Alu 1 286 -24 26 23 0 23 chr13 29033238 29033256 -90711642 + AT_rich Low_complexity Low_complexity 26 43 0 216 0 0 0 chr13 29033256 29033280 -90711618 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1643 161 45 3 chr13 29033282 29033573 -90711325 + AluSx SINE Alu 3 305 -7 2158 130 0 0 chr13 29033602 29033910 -90710988 + AluSx SINE Alu 1 308 -4 1483 160 21 25 chr13 29034843 29035201 -90709697 + L1MB7 LINE L1 5451 5809 -375 1483 177 42 7 chr13 29035201 29035511 -90709387 + L1MB7 LINE L1 5864 6184 0 621 223 101 0 chr13 29035890 29036029 -90708869 + AluJo SINE Alu 121 273 -39 443 137 27 0 chr13 29036043 29036116 -90708782 - AluS SINE Alu -9 302 228 503 159 0 0 chr13 29036122 29036210 -90708688 - AluJ/FRAM SINE Alu -1 311 224 400 120 93 0 chr13 29036235 29036310 -90708588 - AluSc SINE Alu 0 309 228 180 0 0 0 chr13 29036310 29036330 -90708568 + (TC)n Simple_repeat Simple_repeat 2 21 0 529 69 28 0 chr13 29036330 29036402 -90708496 - Alu SINE Alu -16 295 222 189 0 0 0 chr13 29036402 29036423 -90708475 + (TC)n Simple_repeat Simple_repeat 2 22 0 451 97 111 0 chr13 29036423 29036495 -90708403 - AluJ/FRAM SINE Alu -10 302 223 1578 140 63 28 chr13 29036509 29036794 -90708104 - AluJb SINE Alu -15 297 3 1003 153 0 64 chr13 29036801 29037004 -90707894 + AluJo SINE Alu 110 299 -13 816 207 17 86 chr13 29037018 29037250 -90707648 + MER102a DNA MER1_type 104 319 -11 189 0 0 0 chr13 29037402 29037423 -90707475 + (T)n Simple_repeat Simple_repeat 1 21 0 1818 108 97 4 chr13 29037453 29037722 -90707176 - AluSx SINE Alu -18 294 1 403 253 79 75 chr13 29037801 29037870 -90707028 - MIR SINE MIR -9 253 186 1996 146 0 7 chr13 29037870 29038165 -90706733 + AluSx SINE Alu 6 298 -14 403 253 79 75 chr13 29038165 29038336 -90706562 - MIR SINE MIR -76 186 12 278 155 84 42 chr13 29038503 29038574 -90706324 + MER112 DNA MER1_type 78 151 -109 865 147 12 53 chr13 29039466 29039636 -90705262 + AluJb SINE Alu 129 291 -21 292 229 153 10 chr13 29039651 29039755 -90705143 + L1ME LINE L1 5689 5805 -316 1043 155 0 12 chr13 29039948 29040116 -90704782 - FRAM SINE Alu 0 166 1 1168 81 0 0 chr13 29040140 29040288 -90704610 - AluSg/x SINE Alu 0 312 165 686 250 52 48 chr13 29040871 29041119 -90703779 + MIR SINE MIR 14 262 0 183 129 0 0 chr13 29041565 29041596 -90703302 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 561 147 190 17 chr13 29041689 29041805 -90703093 - FLAM_A SINE Alu -6 136 1 203 295 0 16 chr13 29042006 29042067 -90702831 + CT-rich Low_complexity Low_complexity 3 62 0 1804 106 37 0 chr13 29043121 29043366 -90701532 - AluSx SINE Alu -11 301 48 206 250 0 0 chr13 29043526 29043566 -90701332 + polypyrimidine Low_complexity Low_complexity 5 44 0 433 233 212 42 chr13 29043714 29043903 -90700995 - MIR SINE MIR -6 256 36 23 0 0 0 chr13 29044024 29044047 -90700851 + AT_rich Low_complexity Low_complexity 1 23 0 1722 157 6 38 chr13 29044063 29044376 -90700522 - AluJo SINE Alu -9 303 1 249 324 7 20 chr13 29044598 29044746 -90700152 + L2 LINE L2 2431 2576 -738 1964 157 3 0 chr13 29044897 29045197 -90699701 - AluJb SINE Alu -11 301 1 884 150 0 0 chr13 29045871 29046004 -90698894 + FLAM_C SINE Alu 1 133 0 548 136 17 17 chr13 29046007 29046125 -90698773 + GA-rich Low_complexity Low_complexity 5 122 0 2273 129 3 0 chr13 29046304 29046613 -90698285 - AluSx SINE Alu -1 311 2 321 338 72 7 chr13 29047161 29047300 -90697598 - MIR3 SINE MIR -45 163 16 22 35 0 0 chr13 29049535 29049564 -90695334 + AT_rich Low_complexity Low_complexity 1 29 0 1730 155 53 0 chr13 29049764 29049929 -90694969 - AluJb SINE Alu -9 303 115 459 0 0 0 chr13 29049929 29049980 -90694918 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1730 155 53 0 chr13 29049980 29050098 -90694800 - AluJb SINE Alu -197 115 5 239 106 43 0 chr13 29050157 29050204 -90694694 + (CATA)n Simple_repeat Simple_repeat 4 52 0 743 166 0 50 chr13 29050498 29050637 -90694261 + FLAM_A SINE Alu 1 132 -1 2169 107 31 0 chr13 29051013 29051303 -90693595 - AluSx SINE Alu -7 305 7 198 0 0 0 chr13 29051310 29051332 -90693566 + (A)n Simple_repeat Simple_repeat 1 22 0 2033 146 10 0 chr13 29051621 29051922 -90692976 + AluSx SINE Alu 1 304 -8 843 146 0 16 chr13 29051955 29052078 -90692820 + FRAM SINE Alu 36 156 -20 691 231 35 81 chr13 29052234 29052316 -90692582 + L1ME1 LINE L1 4811 4895 -1251 2385 91 0 3 chr13 29052316 29052613 -90692285 - AluSq SINE Alu -17 296 1 691 231 35 81 chr13 29052613 29052685 -90692213 + L1ME1 LINE L1 4895 4969 -1177 1610 178 80 0 chr13 29052685 29052971 -90691927 + AluJb SINE Alu 1 309 -3 691 231 35 81 chr13 29052971 29053075 -90691823 + L1ME1 LINE L1 4969 5058 -1088 2267 100 3 0 chr13 29053170 29053470 -90691428 + AluY SINE Alu 1 301 -10 776 144 7 85 chr13 29053492 29053645 -90691253 + FLAM_C SINE Alu 2 142 -1 2413 210 91 49 chr13 29053645 29053992 -90690906 + L1ME1 LINE L1 5201 5532 -634 2326 97 0 13 chr13 29053992 29054302 -90690596 + AluSx SINE Alu 1 306 -6 2413 210 91 49 chr13 29054302 29054791 -90690107 + L1ME1 LINE L1 5532 6091 -75 1765 136 11 18 chr13 29054796 29055075 -90689823 + AluJo SINE Alu 1 277 -35 651 184 32 16 chr13 29055115 29055240 -90689658 + FLAM_A SINE Alu 1 127 -6 266 184 92 13 chr13 29055293 29055369 -90689529 + L1MB7 LINE L1 6103 6184 0 402 338 91 29 chr13 29055369 29055600 -90689298 + L2 LINE L2 2305 2520 -794 2511 120 2 85 chr13 29055600 29055651 -90689247 - L1MB3 LINE L1 -2 6181 6127 2431 72 3 0 chr13 29055651 29055944 -90688954 - AluSp SINE Alu -19 294 1 2511 120 2 85 chr13 29055944 29056375 -90688523 - L1MB3 LINE L1 -56 6127 5739 402 338 91 29 chr13 29056375 29056551 -90688347 + L2 LINE L2 2520 2737 -577 995 281 131 30 chr13 29056621 29056750 -90688148 - L3 LINE CR1 -163 1414 1299 2531 77 0 0 chr13 29056750 29057061 -90687837 - AluY SINE Alu 0 311 1 995 281 131 30 chr13 29057061 29057398 -90687500 - L3 LINE CR1 -278 1299 901 1482 75 0 21 chr13 29058542 29058729 -90686169 - AluSg/x SINE Alu -44 268 86 5427 105 0 4 chr13 29058729 29059484 -90685414 - L1PA15 LINE L1 -1 6164 5413 877 144 0 0 chr13 29059486 29059611 -90685287 + AluSg/x SINE Alu 166 290 -22 2080 132 0 0 chr13 29059952 29060273 -90684625 - AluSx SINE Alu 0 321 1 2176 118 0 35 chr13 29060275 29060589 -90684309 - AluSx SINE Alu -9 303 1 1597 213 2 82 chr13 29061250 29061667 -90683231 + MSTD LTR MaLR 13 396 0 875 197 0 0 chr13 29061707 29061859 -90683039 - AluJo/FRAM SINE Alu -14 288 137 1340 123 5 0 chr13 29061862 29062049 -90682849 - AluSg/x SINE Alu -7 305 118 998 101 0 0 chr13 29062049 29062187 -90682711 - AluSg/x SINE Alu -12 300 163 982 187 17 74 chr13 29062213 29062443 -90682455 - AluJo SINE Alu -92 220 4 207 0 0 0 chr13 29062672 29062695 -90682203 + (TTTAG)n Simple_repeat Simple_repeat 1 23 0 331 167 83 0 chr13 29062695 29062755 -90682143 - AluSg/x SINE Alu -21 279 215 29 28 0 0 chr13 29062854 29062890 -90682008 + AT_rich Low_complexity Low_complexity 1 36 0 500 185 11 0 chr13 29063549 29063641 -90681257 - L2 LINE L2 0 3313 3221 644 221 0 89 chr13 29063953 29064192 -90680706 - AluJb SINE Alu 0 331 110 1553 68 5 34 chr13 29064322 29064528 -90680370 + AluY SINE Alu 100 299 -12 197 266 0 16 chr13 29064543 29064607 -90680291 + MIR SINE MIR 186 248 -14 33 43 0 0 chr13 29064607 29064654 -90680244 + AT_rich Low_complexity Low_complexity 1 47 0 213 39 0 0 chr13 29064811 29064837 -90680061 + (T)n Simple_repeat Simple_repeat 1 26 0 888 150 13 39 chr13 29064955 29065108 -90679790 + FAM SINE Alu 18 166 -19 210 37 0 0 chr13 29065109 29065136 -90679762 + (CATA)n Simple_repeat Simple_repeat 4 30 0 2071 102 6 87 chr13 29066128 29066326 -90678572 - AluSx SINE Alu -6 306 94 273 57 0 0 chr13 29066326 29066361 -90678537 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2159 99 0 3 chr13 29066361 29066644 -90678254 - AluY SINE Alu -29 282 1 2071 102 6 87 chr13 29066644 29066777 -90678121 - AluSx SINE Alu -216 96 1 285 250 167 8 chr13 29066801 29066921 -90677977 - L1MC5 LINE L1 -58 7903 7765 915 126 0 15 chr13 29067058 29067193 -90677705 - AluSq/x SINE Alu -180 133 1 247 306 207 0 chr13 29068528 29068639 -90676259 + L2 LINE L2 3139 3272 0 1570 185 0 11 chr13 29068901 29069177 -90675721 + AluJo SINE Alu 24 296 -16 1925 164 3 0 chr13 29069397 29069707 -90675191 + AluSx SINE Alu 2 312 0 1658 167 10 20 chr13 29070104 29070403 -90674495 - AluJb SINE Alu -15 297 2 2043 150 3 0 chr13 29070410 29070704 -90674194 - AluSx SINE Alu -17 295 1 215 321 64 0 chr13 29070943 29071052 -90673846 - MIR SINE MIR -60 202 87 224 313 53 13 chr13 29071058 29071208 -90673690 + L2 LINE L2 2181 2336 -978 193 228 105 0 chr13 29071344 29071401 -90673497 + L2 LINE L2 3249 3311 -2 231 339 0 0 chr13 29071932 29071994 -90672904 + L2 LINE L2 3205 3266 -6 2299 138 109 0 chr13 29072391 29072775 -90672123 + MSTB LTR MaLR 1 426 0 891 152 0 0 chr13 29073198 29073330 -90671568 + FLAM_C SINE Alu 1 132 -1 1483 138 0 14 chr13 29074047 29074264 -90670634 + AluSq SINE Alu 1 214 -99 866 165 0 0 chr13 29074456 29074589 -90670309 - FLAM_A SINE Alu 0 133 1 964 164 12 12 chr13 29074728 29074899 -90669999 - FAM SINE Alu 0 175 5 1453 243 121 27 chr13 29074954 29075561 -90669337 + MLT1E2 LTR MaLR 1 624 -2 1867 165 3 0 chr13 29076737 29077022 -90667876 + AluJo SINE Alu 1 286 -26 1022 176 16 5 chr13 29077220 29077407 -90667491 - MER5A DNA MER1_type 0 189 1 2158 89 57 0 chr13 29077508 29077790 -90667108 - AluSx SINE Alu -14 298 1 1723 176 13 20 chr13 29078150 29078451 -90666447 + AluJo SINE Alu 1 299 -13 665 292 26 13 chr13 29078557 29078783 -90666115 + MIR SINE MIR 21 249 -13 1376 138 61 122 chr13 29078813 29079125 -90665773 - AluJb SINE Alu -19 293 1 2284 122 0 0 chr13 29079212 29079515 -90665383 + AluSx SINE Alu 1 303 -9 2491 53 0 23 chr13 29079515 29079816 -90665082 + AluY SINE Alu 1 294 -17 2001 193 78 76 chr13 29079883 29080141 -90664757 - HsTC2 DNA Tc2 -5 1893 1637 2233 112 0 0 chr13 29080141 29080437 -90664461 + AluSx SINE Alu 1 296 -16 2218 110 0 0 chr13 29080439 29080756 -90664142 + AluSx SINE Alu 1 317 0 2001 193 78 76 chr13 29080756 29081120 -90663778 - HsTC2 DNA Tc2 -261 1637 1265 227 236 97 14 chr13 29081125 29081197 -90663701 - HsTC2 DNA Tc2 -1778 120 43 3819 181 23 6 chr13 29081315 29082048 -90662850 - L1MB8 LINE L1 -6 6172 5427 1798 171 31 14 chr13 29082211 29082503 -90662395 - AluJo SINE Alu -13 299 3 1667 159 65 0 chr13 29082838 29083115 -90661783 - AluJb SINE Alu -17 295 1 1045 179 10 25 chr13 29083843 29084039 -90660859 - AluJ SINE Alu -13 299 107 809 143 80 116 chr13 29084039 29084063 -90660835 - THE1C LTR MaLR -1 374 351 3004 51 5 8 chr13 29084063 29084452 -90660446 + L1PA7 LINE L1 5767 6154 0 809 143 80 116 chr13 29084452 29084651 -90660247 - THE1C LTR MaLR -24 351 159 1120 122 0 0 chr13 29084652 29084829 -90660069 + AluSq SINE Alu 151 327 0 332 330 67 6 chr13 29085104 29085283 -90659615 + MIR SINE MIR 2 191 -71 859 154 70 6 chr13 29085827 29085983 -90658915 - THE1C LTR MaLR -207 168 3 705 173 0 0 chr13 29085987 29086097 -90658801 - AluJ SINE Alu -201 111 2 2073 147 0 0 chr13 29086159 29086458 -90658440 - AluSx SINE Alu -13 299 1 205 219 110 0 chr13 29086492 29086574 -90658324 - MIR SINE MIR -69 193 103 209 240 146 10 chr13 29086686 29086782 -90658116 + MIR SINE MIR 138 246 -16 189 385 120 8 chr13 29087847 29087964 -90656934 - MIR SINE MIR -113 149 20 2669 42 0 3 chr13 29088848 29089159 -90655739 + AluY SINE Alu 1 310 -1 277 175 0 35 chr13 29090220 29090277 -90654621 + Tigger4(Zombi) DNA MER2_type 4 58 -2673 1337 142 0 0 chr13 29090302 29090506 -90654392 + Tigger4(Zombi) DNA MER2_type 2528 2731 0 480 262 213 19 chr13 29090520 29090783 -90654115 + L1MC/D LINE L1 5506 5819 -1989 1942 162 7 0 chr13 29090866 29091163 -90653735 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr13 29091334 29091355 -90653543 + AT_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr13 29091611 29091659 -90653239 + (TG)n Simple_repeat Simple_repeat 2 49 0 609 258 150 45 chr13 29091670 29091724 -90653174 - L1ME4a LINE L1 0 6121 6074 2141 92 18 0 chr13 29091724 29091997 -90652901 + AluSx SINE Alu 6 325 0 250 0 48 24 chr13 29091997 29092039 -90652859 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 609 258 150 45 chr13 29092039 29092158 -90652740 - L1ME4a LINE L1 -47 6074 5969 2373 78 7 0 chr13 29092158 29092454 -90652444 + AluSg SINE Alu 1 298 -12 609 258 150 45 chr13 29092454 29092605 -90652293 - L1ME4a LINE L1 -152 5969 5835 2032 130 41 0 chr13 29092605 29092898 -90652000 - AluSx SINE Alu -7 305 1 609 258 150 45 chr13 29092898 29093016 -90651882 - L1ME4a LINE L1 -286 5835 5629 396 235 117 34 chr13 29093034 29093213 -90651685 - MIR SINE MIR -59 203 10 385 200 60 67 chr13 29093450 29093465 -90651433 + MER112 DNA MER1_type 1 15 -245 2128 139 0 0 chr13 29093465 29093766 -90651132 - AluSx SINE Alu -11 301 1 385 200 60 67 chr13 29093766 29093900 -90650998 + MER112 DNA MER1_type 15 149 -111 2329 79 24 0 chr13 29093968 29094259 -90650639 - AluSp SINE Alu -15 298 1 1646 141 8 0 chr13 29094737 29094978 -90649920 - AluSx SINE Alu -69 243 1 2117 121 3 10 chr13 29095710 29096017 -90648881 + AluSq SINE Alu 2 306 -7 694 222 166 74 chr13 29096361 29096497 -90648401 - HAL1 LINE L1 -226 2281 2159 2023 94 0 0 chr13 29096497 29096751 -90648147 - AluSx SINE Alu -58 254 1 694 222 166 74 chr13 29096751 29097114 -90647784 - HAL1 LINE L1 -348 2159 1736 857 216 144 41 chr13 29097128 29097420 -90647478 - HAL1 LINE L1 -803 1704 1383 899 230 221 63 chr13 29097437 29097754 -90647144 - L1ME3A LINE L1 -8 6162 5754 405 0 0 0 chr13 29097754 29097799 -90647099 + (TA)n Simple_repeat Simple_repeat 1 45 0 899 230 221 63 chr13 29097799 29097924 -90646974 - L1ME3A LINE L1 -416 5754 5650 22 0 0 0 chr13 29098020 29098042 -90646856 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 29098359 29098388 -90646510 + AT_rich Low_complexity Low_complexity 1 29 0 1117 34 34 31 chr13 29098553 29098909 -90645989 + (TTTC)n Simple_repeat Simple_repeat 1 357 0 2262 88 0 0 chr13 29098993 29099298 -90645600 - AluSx SINE Alu 0 305 1 2517 60 3 3 chr13 29100684 29100985 -90643913 - AluSp SINE Alu -12 301 1 813 148 0 16 chr13 29101319 29101441 -90643457 + FLAM_A SINE Alu 6 125 -17 2446 93 0 3 chr13 29103219 29103529 -90641369 - AluSx SINE Alu -3 309 1 480 243 66 29 chr13 29103643 29103779 -90641119 - MLT1E3 LTR MaLR -430 194 54 3157 195 33 3 chr13 29104353 29104928 -90639970 + MER21B LTR ERV1 24 615 -248 546 223 142 9 chr13 29105081 29105292 -90639606 - HAL1 LINE L1 -1468 1039 801 518 158 12 0 chr13 29105298 29105380 -90639518 + FLAM_A SINE Alu 42 124 -18 221 128 43 0 chr13 29105467 29105514 -90639384 + (TTA)n Simple_repeat Simple_repeat 2 50 0 397 321 153 51 chr13 29105592 29105688 -90639210 - HAL1 LINE L1 -1932 575 490 925 173 74 40 chr13 29105688 29105789 -90639109 - MER3 DNA MER1_type 0 209 113 1931 150 0 29 chr13 29105789 29106103 -90638795 - AluJb SINE Alu -7 305 1 925 173 74 40 chr13 29106103 29106203 -90638695 - MER3 DNA MER1_type -96 113 1 397 321 153 51 chr13 29106203 29106219 -90638679 - HAL1 LINE L1 -2017 490 477 2172 105 3 3 chr13 29106219 29106515 -90638383 - AluSc SINE Alu -13 296 1 397 321 153 51 chr13 29106515 29106587 -90638311 - HAL1 LINE L1 -2030 477 414 1699 197 0 3 chr13 29106587 29106886 -90638012 - AluJo SINE Alu -14 298 1 397 321 153 51 chr13 29106886 29107129 -90637769 - HAL1 LINE L1 -2093 414 102 189 316 0 0 chr13 29107325 29107382 -90637516 - L2 LINE L2 -1 3312 3256 240 246 9 105 chr13 29107560 29107674 -90637224 + MLT1H LTR MaLR 434 536 -13 1825 119 0 19 chr13 29107770 29108030 -90636868 + AluSx SINE Alu 35 289 -23 3075 86 3 0 chr13 29108190 29108564 -90636334 + THE1C LTR MaLR 1 375 0 1501 189 54 0 chr13 29109118 29109398 -90635500 + AluJb SINE Alu 2 296 -16 1537 159 32 42 chr13 29109512 29109795 -90635103 - AluJb SINE Alu -31 281 2 2218 100 0 32 chr13 29109809 29110118 -90634780 - AluSx SINE Alu -13 299 1 199 338 13 13 chr13 29110353 29110430 -90634468 - L2 LINE L2 -1 3271 3195 194 300 56 33 chr13 29111582 29111672 -90633226 + L2 LINE L2 2630 2721 -593 1825 125 56 14 chr13 29111808 29112095 -90632803 - AluJo SINE Alu -13 299 1 955 218 70 35 chr13 29112219 29112535 -90632363 - L1MC4 LINE L1 0 8042 7716 207 114 0 0 chr13 29112794 29112829 -90632069 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 491 291 55 58 chr13 29113094 29113438 -90631460 + LTR16C LTR ERVL 149 491 0 462 235 25 86 chr13 29113461 29113623 -90631275 + MIR SINE MIR 29 180 -82 2612 33 0 3 chr13 29115135 29115434 -90629464 - AluY SINE Alu -5 306 9 2191 124 3 0 chr13 29116224 29116522 -90628376 + AluSq SINE Alu 1 299 -14 4041 118 31 2 chr13 29116534 29117144 -90627754 + L1MA5A LINE L1 5667 6294 -3 264 278 83 38 chr13 29117514 29117647 -90627251 + L2 LINE L2 3159 3297 -16 188 360 140 32 chr13 29117665 29117915 -90626983 - L3 LINE CR1 -7 1570 1294 873 164 24 18 chr13 29118858 29119023 -90625875 + MER5A DNA MER1_type 22 187 -2 220 253 232 0 chr13 29119032 29119131 -90625767 + L2 LINE L2 3151 3272 0 187 133 0 0 chr13 29120235 29120265 -90624633 + L2 LINE L2 3284 3313 0 596 326 62 27 chr13 29120270 29120641 -90624257 - L2 LINE L2 -1217 2097 1714 215 291 27 27 chr13 29121235 29121345 -90623553 - L2 LINE L2 -1232 2082 1973 238 291 184 50 chr13 29121387 29121882 -90623016 - L2 LINE L2 -1097 2217 1657 1964 92 92 0 chr13 29122141 29122414 -90622484 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr13 29122472 29122496 -90622402 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 29122518 29122539 -90622359 + AT_rich Low_complexity Low_complexity 1 21 0 1805 160 0 17 chr13 29123428 29123722 -90621176 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr13 29124083 29124105 -90620793 + AT_rich Low_complexity Low_complexity 1 22 0 1494 143 0 115 chr13 29124252 29124598 -90620300 + AluSx SINE Alu 1 309 0 365 279 39 10 chr13 29125151 29125255 -90619643 - MIR SINE MIR -109 153 47 487 204 265 20 chr13 29125668 29125815 -90619083 - MER5A DNA MER1_type -3 186 4 1661 170 47 7 chr13 29126407 29126707 -90618191 - MER58B DNA MER1_type 0 341 30 2234 95 3 26 chr13 29127445 29127751 -90617147 - AluSg SINE Alu -11 299 1 1308 214 126 53 chr13 29128238 29128326 -90616572 + MLT1C LTR MaLR 1 81 -386 1671 185 3 13 chr13 29128326 29128628 -90616270 + AluJo SINE Alu 1 299 -13 1308 214 126 53 chr13 29128628 29128974 -90615924 + MLT1C LTR MaLR 81 467 0 1893 123 41 0 chr13 29128996 29129265 -90615633 + AluSx SINE Alu 1 280 -32 741 254 51 42 chr13 29129576 29129793 -90615105 - MIR SINE MIR -30 232 14 786 155 0 23 chr13 29130283 29130412 -90614486 + FLAM_C SINE Alu 13 138 -5 2397 83 0 3 chr13 29131394 29131695 -90613203 - AluSg SINE Alu -10 300 1 25 31 0 0 chr13 29131919 29131951 -90612947 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 29131977 29132000 -90612898 + AT_rich Low_complexity Low_complexity 1 23 0 2025 143 0 10 chr13 29133747 29134055 -90610843 - AluJb SINE Alu -7 305 1 278 269 39 0 chr13 29134474 29134552 -90610346 + L2 LINE L2 3188 3268 -4 190 333 65 43 chr13 29135526 29135619 -90609279 + L2 LINE L2 3215 3309 -4 828 131 95 0 chr13 29135876 29136013 -90608885 + FRAM SINE Alu 6 155 -21 225 326 103 63 chr13 29136331 29136506 -90608392 + MIR3 SINE MIR 21 202 -6 354 210 20 20 chr13 29136896 29136996 -90607902 + L2 LINE L2 2446 2545 -769 721 210 57 19 chr13 29137002 29137159 -90607739 + MLT1A2 LTR MaLR 1 163 -211 1786 170 10 7 chr13 29137162 29137462 -90607436 + AluJo SINE Alu 1 301 -11 654 195 67 7 chr13 29137462 29137611 -90607287 + MLT1A2 LTR MaLR 230 387 -3 674 272 117 5 chr13 29137713 29137919 -90606979 + MIR SINE MIR 34 262 0 363 307 40 125 chr13 29138210 29138562 -90606336 + L2 LINE L2 2950 3271 -1 541 345 96 47 chr13 29138569 29139244 -90605654 + L2 LINE L2 2538 3259 -13 332 286 0 48 chr13 29139428 29139533 -90605365 - MER112 DNA MER1_type -160 100 1 343 280 113 54 chr13 29139676 29139844 -90605054 + MIR SINE MIR 77 254 -8 235 232 18 0 chr13 29140660 29140716 -90604182 - L2 LINE L2 0 3313 3257 262 288 0 0 chr13 29140789 29140848 -90604050 + L2 LINE L2 3209 3267 -5 708 174 137 31 chr13 29141050 29141211 -90603687 - AluJo SINE Alu -20 292 115 360 285 0 39 chr13 29141531 29141661 -90603237 + L2 LINE L2 2218 2342 -972 387 172 17 0 chr13 29141866 29141924 -90602974 + MER2 DNA MER2_type 2 60 -285 1551 138 65 11 chr13 29142011 29142271 -90602627 + MER2 DNA MER2_type 72 345 0 198 170 21 0 chr13 29142325 29142372 -90602526 - L2 LINE L2 -164 3149 3102 * 222 300 20 0 chr13 29142370 29142420 -90602478 + MER91A DNA MER1_type 119 169 -27 1925 262 72 52 chr13 29142450 29142660 -90602238 - L2 LINE L2 -491 2823 2619 1161 163 62 14 chr13 29142660 29142869 -90602029 + MER20 DNA MER1_type 1 219 0 1925 262 72 52 chr13 29142869 29142945 -90601953 - L2 LINE L2 -695 2619 2546 2353 76 0 3 chr13 29142945 29143248 -90601650 - AluY SINE Alu -9 302 1 1925 262 72 52 chr13 29143248 29144037 -90600861 - L2 LINE L2 -768 2546 1728 225 177 32 32 chr13 29144183 29144245 -90600653 - L1MC4 LINE L1 -191 7851 7790 282 222 0 0 chr13 29144337 29144400 -90600498 - L1MC4 LINE L1 -370 7672 7610 1647 134 105 43 chr13 29145554 29145905 -90598993 + THE1C LTR MaLR 3 375 0 27 29 0 0 chr13 29146093 29146127 -90598771 + AT_rich Low_complexity Low_complexity 1 34 0 953 184 112 18 chr13 29146222 29146445 -90598453 + MLT1F LTR MaLR 1 244 -298 619 183 37 92 chr13 29146449 29146613 -90598285 + MLT1F LTR MaLR 413 567 0 2366 62 10 7 chr13 29147270 29147576 -90597322 + AluY SINE Alu 1 307 -4 224 281 110 12 chr13 29147626 29147708 -90597190 + MER5B DNA MER1_type 50 139 -39 370 122 0 81 chr13 29147715 29147789 -90597109 + Tigger2 DNA MER2_type 2 69 -2649 * 2043 155 67 23 chr13 29147773 29147890 -90597008 + Tigger2 DNA MER2_type 2267 2377 -341 2540 97 24 13 chr13 29147890 29148273 -90596625 - L1PB2 LINE L1 -4 6147 5761 2043 155 67 23 chr13 29148273 29148588 -90596310 + Tigger2 DNA MER2_type 2377 2718 0 423 223 293 19 chr13 29148740 29148897 -90596001 - MIR SINE MIR -6 256 57 204 328 45 0 chr13 29148903 29148970 -90595928 - MIR SINE MIR -114 148 79 1585 108 117 4 chr13 29149490 29149730 -90595168 - AluSg SINE Alu -21 289 23 425 161 0 12 chr13 29150068 29150149 -90594749 + MER21B LTR ERV1 420 499 -364 322 302 0 47 chr13 29150334 29150420 -90594478 - L2 LINE L2 -46 3226 3145 425 179 0 21 chr13 29150448 29150543 -90594355 + (CATATA)n Simple_repeat Simple_repeat 3 95 0 258 330 50 30 chr13 29151268 29151368 -90593530 + MIR SINE MIR 20 121 -87 774 199 12 6 chr13 29151370 29151531 -90593367 - AluSx SINE Alu -11 301 140 595 133 0 0 chr13 29151530 29151613 -90593285 - AluSx SINE Alu -229 83 1 * 344 230 84 42 chr13 29152108 29152409 -90592489 + L1MC4a LINE L1 5650 5822 -299 533 264 58 34 chr13 29152657 29152831 -90592067 - MIR3 SINE MIR -12 196 18 210 250 141 0 chr13 29152829 29152895 -90592003 - MIR SINE MIR -103 105 39 * 1999 105 0 51 chr13 29152986 29153301 -90591597 - AluSg SINE Alu -11 299 1 870 220 121 23 chr13 29153598 29153903 -90590995 - MER46C DNA MER2_type 0 338 4 300 276 105 59 chr13 29157239 29157478 -90587420 - L2 LINE L2 -739 2575 2326 185 218 91 0 chr13 29157920 29157975 -90586923 - MIR SINE MIR -31 231 172 655 187 187 11 chr13 29158137 29158319 -90586579 + MER20 DNA MER1_type 1 214 -5 211 339 122 26 chr13 29158555 29158744 -90586154 - L3 LINE CR1 -79 1498 1292 210 281 123 44 chr13 29161026 29161140 -90583758 - MIR SINE MIR -114 148 26 229 263 112 53 chr13 29161155 29161307 -90583591 + MER5A DNA MER1_type 28 188 -1 998 249 143 27 chr13 29161407 29162019 -90582879 - L2 LINE L2 -8 3305 2629 1783 229 145 64 chr13 29162034 29162767 -90582131 + MER21B LTR ERV1 18 809 -54 2113 120 29 109 chr13 29162780 29162842 -90582056 + MER65A LTR ERV1 1 66 -379 1504 181 0 35 chr13 29162842 29163156 -90581742 + AluJo SINE Alu 1 303 -9 2113 120 29 109 chr13 29163156 29163577 -90581321 + MER65A LTR ERV1 66 445 0 910 186 133 8 chr13 29163609 29163857 -90581041 - L2 LINE L2 -677 2637 2359 369 89 0 0 chr13 29163955 29164011 -90580887 - AluSc SINE Alu -1 298 243 214 333 20 0 chr13 29164133 29164232 -90580666 + CT-rich Low_complexity Low_complexity 2 102 0 2075 104 14 0 chr13 29164453 29164740 -90580158 - AluSx SINE Alu -21 291 1 25 0 0 0 chr13 29164844 29164869 -90580029 + AT_rich Low_complexity Low_complexity 1 25 0 1153 186 16 80 chr13 29164936 29165030 -90579868 + MER58B DNA MER1_type 51 149 -2271 2001 109 14 14 chr13 29165030 29165358 -90579540 + AluSx SINE Alu 1 312 0 1153 186 16 80 chr13 29165358 29165574 -90579324 + MER58B DNA MER1_type 149 341 0 24 0 0 0 chr13 29165867 29165891 -90579007 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 29166665 29166694 -90578204 + AT_rich Low_complexity Low_complexity 1 29 0 1543 125 35 17 chr13 29166699 29166868 -90578030 - L1MB2 LINE L1 -32 6139 5961 2058 95 15 58 chr13 29166868 29167193 -90577705 - AluSx SINE Alu -1 311 1 1543 125 35 17 chr13 29167193 29167310 -90577588 - L1MB2 LINE L1 -210 5961 5848 2271 72 3 7 chr13 29168218 29168510 -90576388 + AluY SINE Alu 1 291 -20 197 233 0 0 chr13 29168652 29168695 -90576203 + L2 LINE L2 2464 2506 -808 528 329 6 6 chr13 29168695 29168865 -90576033 + L2 LINE L2 2483 2652 -662 878 165 0 0 chr13 29168893 29169026 -90575872 - FLAM_C SINE Alu -10 133 1 209 294 29 0 chr13 29169028 29169096 -90575802 + L2 LINE L2 2689 2758 -556 1983 161 16 0 chr13 29169110 29169414 -90575484 + AluJb SINE Alu 1 309 -3 2110 86 53 30 chr13 29169414 29169714 -90575184 + AluSc SINE Alu 1 308 -1 668 230 22 0 chr13 29169744 29169883 -90575015 + FRAM SINE Alu 27 168 -8 260 183 0 17 chr13 29169898 29169958 -90574940 + GA-rich Low_complexity Low_complexity 2 60 0 29 0 0 0 chr13 29169960 29169989 -90574909 + AT_rich Low_complexity Low_complexity 1 29 0 723 276 171 27 chr13 29169992 29170461 -90574437 + L2 LINE L2 2772 3307 -6 23 0 0 0 chr13 29170554 29170577 -90574321 + AT_rich Low_complexity Low_complexity 1 23 0 1886 174 0 7 chr13 29170725 29171023 -90573875 + AluJb SINE Alu 1 296 -16 945 156 22 34 chr13 29171023 29171202 -90573696 + AluJb SINE Alu 134 310 -2 1711 124 84 4 chr13 29171269 29171543 -90573355 + AluSx SINE Alu 5 300 -12 534 266 97 52 chr13 29171631 29171898 -90573000 + L2 LINE L2 1645 1923 -1391 1882 42 0 0 chr13 29172062 29172303 -90572595 - L1PA7 LINE L1 -200 5954 5714 2365 115 0 0 chr13 29172303 29172608 -90572290 - AluSg SINE Alu -5 305 1 1578 129 80 10 chr13 29172987 29173298 -90571600 + MER44D DNA MER2_type 1 603 -6 417 113 0 38 chr13 29173299 29173379 -90571519 - Tigger7 DNA MER2_type -63 2424 2348 2072 116 0 44 chr13 29173385 29173705 -90571193 + AluSx SINE Alu 1 306 -6 3474 167 42 3 chr13 29173717 29174357 -90570541 - Tigger7 DNA MER2_type -1821 666 2 561 299 98 22 chr13 29174408 29175443 -90569455 - L1ME3A LINE L1 -307 5863 4743 357 266 44 44 chr13 29176480 29176638 -90568260 + L1ME LINE L1 5618 5775 -346 677 165 0 0 chr13 29176659 29176768 -90568130 + FLAM_A SINE Alu 11 119 -23 1104 149 63 54 chr13 29176840 29177061 -90567837 - AluJb SINE Alu -7 305 83 436 293 83 13 chr13 29178057 29178214 -90566684 + MER5B DNA MER1_type 7 174 -4 491 233 25 0 chr13 29178217 29178337 -90566561 + MLT1L LTR MaLR 149 271 -344 31 26 0 0 chr13 29178661 29178699 -90566199 + AT_rich Low_complexity Low_complexity 1 38 0 42 65 0 0 chr13 29178754 29178831 -90566067 + AT_rich Low_complexity Low_complexity 1 77 0 2347 88 0 0 chr13 29178831 29179116 -90565782 + AluSc SINE Alu 1 285 -24 294 206 0 0 chr13 29179118 29179181 -90565717 + (TA)n Simple_repeat Simple_repeat 1 63 0 25 0 0 0 chr13 29179275 29179300 -90565598 + AT_rich Low_complexity Low_complexity 1 25 0 300 171 333 19 chr13 29179468 29179573 -90565325 - L1ME1 LINE L1 0 6166 6029 2305 90 3 3 chr13 29180306 29180606 -90564292 + AluSq SINE Alu 1 300 -13 300 273 106 30 chr13 29181009 29181141 -90563757 + MER5B DNA MER1_type 7 148 -30 1427 157 0 26 chr13 29181805 29182035 -90562863 - AluJo SINE Alu -12 300 77 363 158 12 18 chr13 29182092 29182176 -90562722 - AluJ/FLAM SINE Alu -235 67 6 620 116 290 0 chr13 29183179 29183317 -90561581 + Tigger4(Zombi) DNA MER2_type 2554 2731 0 2140 118 0 3 chr13 29183512 29183808 -90561090 - AluSx SINE Alu -17 295 1 2259 94 7 7 chr13 29183901 29184200 -90560698 + AluSq SINE Alu 1 299 -14 446 304 47 23 chr13 29184835 29185049 -90559849 - MIR SINE MIR -41 221 3 414 216 0 39 chr13 29185658 29185760 -90559138 + MIR SINE MIR 87 184 -78 762 192 150 16 chr13 29186477 29186670 -90558228 + MER20 DNA MER1_type 1 219 0 3475 129 93 47 chr13 29188559 29189304 -90555594 + LTR1 LTR ERV1 7 785 0 2106 117 0 29 chr13 29189959 29190275 -90554623 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 29190573 29190594 -90554304 + AT_rich Low_complexity Low_complexity 1 21 0 1432 170 30 48 chr13 29190596 29190867 -90554031 - AluJo SINE Alu -22 290 25 4477 201 25 8 chr13 29191057 29192104 -90552794 - L1 LINE L1 -1250 4896 3832 385 111 48 0 chr13 29194394 29194457 -90550441 - MIR3 SINE MIR -53 155 90 1751 122 45 17 chr13 29196436 29196771 -90548127 - MER4A LTR ERV1 0 664 262 467 101 0 14 chr13 29196786 29196855 -90548043 - MER4A LTR ERV1 -595 69 2 2254 94 7 0 chr13 29197638 29197926 -90546972 - AluSp SINE Alu -23 290 1 270 157 39 0 chr13 29198605 29198656 -90546242 + MIR SINE MIR 200 252 -10 22 0 0 0 chr13 29199020 29199042 -90545856 + AT_rich Low_complexity Low_complexity 1 22 0 381 206 28 0 chr13 29199060 29199167 -90545731 + (TA)n Simple_repeat Simple_repeat 1 110 0 686 87 11 22 chr13 29199168 29199260 -90545638 - FLAM_A SINE Alu -19 123 33 2129 151 10 74 chr13 29199330 29199369 -90545529 - MLT1B LTR MaLR 0 390 350 2371 104 3 0 chr13 29199369 29199678 -90545220 + AluSp SINE Alu 1 310 -3 2129 151 10 74 chr13 29199678 29200055 -90544843 - MLT1B LTR MaLR -40 350 1 180 268 24 0 chr13 29200666 29200707 -90544191 - L2 LINE L2 -16 3256 3215 232 129 0 0 chr13 29200761 29200792 -90544106 + MER46A DNA MER2_type 2 32 -204 800 108 0 0 chr13 29200794 29200896 -90544002 - AluSp/q SINE Alu -18 295 194 703 130 9 9 chr13 29200896 29201004 -90543894 + MER46A DNA MER2_type 129 236 0 203 259 176 0 chr13 29201004 29201089 -90543809 - MIR SINE MIR -111 151 52 1434 155 89 113 chr13 29201089 29201548 -90543350 + LTR7 LTR ERV1 1 448 -2 2895 3 0 3 chr13 29201646 29201958 -90542940 + AluYa5 SINE Alu 1 311 0 180 200 0 93 chr13 29201967 29202042 -90542856 + MIR SINE MIR 137 204 -58 440 285 20 20 chr13 29202053 29202204 -90542694 + MLT1H LTR MaLR 155 305 -244 432 228 165 29 chr13 29202432 29202638 -90542260 + MLT1H LTR MaLR 315 548 -7 255 284 65 41 chr13 29202952 29203121 -90541777 + HAL1 LINE L1 473 645 -1862 2113 163 96 0 chr13 29203386 29203772 -90541126 - MSTB LTR MaLR 0 426 4 230 205 0 48 chr13 29203891 29203974 -90540924 + HAL1 LINE L1 999 1077 -1430 476 348 39 19 chr13 29204464 29204720 -90540178 - MIR SINE MIR 0 262 2 2224 118 0 13 chr13 29204816 29205129 -90539769 + AluSg SINE Alu 2 310 0 2031 104 14 0 chr13 29205509 29205789 -90539109 - AluSx SINE Alu 0 312 29 512 214 0 10 chr13 29205822 29205925 -90538973 + L2 LINE L2 2289 2390 -924 25 51 0 0 chr13 29206031 29206070 -90538828 + AT_rich Low_complexity Low_complexity 1 39 0 1007 192 36 0 chr13 29206352 29206519 -90538379 - FAM SINE Alu -2 173 1 414 368 48 0 chr13 29207355 29207557 -90537341 - L2 LINE L2 -217 3055 2842 2231 107 0 0 chr13 29207668 29207958 -90536940 + AluSx SINE Alu 1 290 -22 2409 84 3 0 chr13 29208041 29208338 -90536560 - AluSp SINE Alu -15 298 1 413 333 28 7 chr13 29208338 29208479 -90536419 - MIR SINE MIR -111 151 8 2013 149 0 3 chr13 29208620 29208916 -90535982 + AluSx SINE Alu 1 295 -17 770 205 38 17 chr13 29209159 29209370 -90535528 + MER3 DNA MER1_type 2 170 -39 1019 111 0 21 chr13 29209392 29209536 -90535362 - AluJb SINE Alu -171 141 1 327 143 0 0 chr13 29209538 29209587 -90535311 + MER3 DNA MER1_type 155 203 -6 1854 189 58 6 chr13 29209672 29210015 -90534883 + MLT1A1 LTR MaLR 5 365 0 2353 105 7 3 chr13 29210061 29210365 -90534533 - AluSx SINE Alu -7 305 1 1661 133 39 0 chr13 29210541 29210796 -90534102 - AluJb SINE Alu -8 304 40 28 48 0 0 chr13 29211116 29211158 -90533740 + AT_rich Low_complexity Low_complexity 1 42 0 206 188 0 42 chr13 29211892 29211940 -90532958 + L3 LINE CR1 177 222 -1355 442 194 0 25 chr13 29211988 29212098 -90532800 - L1PA16 LINE L1 -122 6009 5904 551 218 210 44 chr13 29212773 29213044 -90531854 + L1MC4 LINE L1 7478 7793 -249 21 0 0 0 chr13 29213224 29213245 -90531653 + AT_rich Low_complexity Low_complexity 1 21 0 4180 155 33 19 chr13 29213250 29213979 -90530919 - L1PA16 LINE L1 -9 6157 5419 349 286 57 0 chr13 29213980 29214085 -90530813 + L1MC4 LINE L1 7932 8042 0 2722 190 58 17 chr13 29214540 29215057 -90529841 - MLT1F LTR MaLR 0 542 5 384 192 30 40 chr13 29215638 29215657 -90529241 - MER104 DNA Tc2 -1776 122 104 1942 156 7 7 chr13 29215657 29215964 -90528934 + AluSx SINE Alu 1 307 -5 384 192 30 40 chr13 29215964 29216043 -90528855 - MER104 DNA Tc2 -1794 104 25 2220 111 19 7 chr13 29216077 29216384 -90528514 + AluSx SINE Alu 1 311 -1 1980 132 24 7 chr13 29217043 29217339 -90527559 + AluSx SINE Alu 1 301 -11 514 207 180 0 chr13 29217397 29217547 -90527351 + MER104 DNA MER2_type 1 177 -3 311 324 171 0 chr13 29219517 29219622 -90525276 + MER5B DNA MER1_type 4 126 -52 323 167 0 14 chr13 29219677 29219749 -90525149 + CT-rich Low_complexity Low_complexity 1 71 0 801 149 0 0 chr13 29219749 29219863 -90525035 - FLAM_A SINE Alu -17 125 12 277 130 19 37 chr13 29219886 29219940 -90524958 + MER5B DNA MER1_type 126 178 0 1453 147 34 8 chr13 29220285 29220551 -90524347 - AluSp SINE Alu -19 294 22 3835 131 100 12 chr13 29221478 29222148 -90522750 - L1MB4 LINE L1 0 6180 5452 21 0 0 0 chr13 29224653 29224674 -90520224 + AT_rich Low_complexity Low_complexity 1 21 0 1740 176 243 109 chr13 29224962 29225734 -90519164 - MER52C LTR ERV1 0 1278 211 258 302 101 0 chr13 29226162 29226291 -90518607 - MIR SINE MIR 0 262 121 259 176 39 0 chr13 29226837 29226888 -90518010 - L1ME LINE L1 -477 5644 5592 271 328 47 8 chr13 29227103 29227231 -90517667 - L2 LINE L2 -9 3304 3172 2703 209 59 13 chr13 29227257 29227638 -90517260 + MER82 DNA MER2_type 1 422 -231 2505 65 0 0 chr13 29227638 29227948 -90516950 + AluY SINE Alu 1 310 -1 2703 209 59 13 chr13 29227948 29228177 -90516721 + MER82 DNA MER2_type 422 639 -14 1836 146 4 4 chr13 29228315 29228589 -90516309 - AluSx SINE Alu -36 276 3 402 200 0 0 chr13 29228591 29228661 -90516237 + MLT1A1 LTR MaLR 296 365 0 200 306 200 0 chr13 29228664 29228749 -90516149 + L2 LINE L2 2910 3011 -302 2433 281 177 29 chr13 29228753 29230318 -90514580 - L2 LINE L2 -1278 2036 240 2178 143 0 0 chr13 29230388 29230696 -90514202 + AluSx SINE Alu 1 308 -4 340 152 105 0 chr13 29230729 29230795 -90514103 - AluJ/FLAM SINE Alu -240 62 1 24 32 0 0 chr13 29231370 29231401 -90513497 + AT_rich Low_complexity Low_complexity 1 31 0 874 177 0 0 chr13 29231437 29231578 -90513320 - AluJo SINE Alu -171 141 1 1767 171 161 18 chr13 29232212 29232646 -90512252 + LTR54B LTR ERV1 1 496 -2 2092 121 3 3 chr13 29233294 29233592 -90511306 - AluSx SINE Alu -14 298 1 221 327 152 15 chr13 29235414 29235677 -90509221 - L2 LINE L2 -23 3249 2951 2264 81 0 16 chr13 29235822 29236131 -90508767 + AluY SINE Alu 1 304 -7 2265 126 3 0 chr13 29236459 29236761 -90508137 - AluSg SINE Alu -7 303 1 289 315 82 7 chr13 29237467 29237613 -90507285 - L1ME LINE L1 -398 5772 5616 699 0 0 0 chr13 29237789 29237863 -90507035 - tRNA-Asn-AAC tRNA tRNA -3 74 1 21 57 0 0 chr13 29238049 29238084 -90506814 + GC_rich Low_complexity Low_complexity 1 35 0 369 213 104 91 chr13 29238387 29238608 -90506290 - MER106A DNA MER1_type -11 225 2 2345 55 26 16 chr13 29238712 29239019 -90505879 - AluSg SINE Alu 0 310 1 3389 148 142 5 chr13 29239023 29239680 -90505218 - L1MB3 LINE L1 -52 6131 5385 1247 72 55 6 chr13 29240212 29240393 -90504505 + AluY SINE Alu 1 190 -121 584 137 60 8 chr13 29240493 29240610 -90504288 + AluY SINE Alu 187 309 -2 433 278 24 16 chr13 29241345 29241471 -90503427 + L2 LINE L2 3185 3311 -2 3666 119 88 54 chr13 29241588 29242316 -90502582 + L1MA9 LINE L1 5474 6234 -66 306 0 0 0 chr13 29242316 29242350 -90502548 + (TG)n Simple_repeat Simple_repeat 2 35 0 3666 119 88 54 chr13 29242350 29242415 -90502483 + L1MA9 LINE L1 6234 6295 -5 645 255 75 19 chr13 29242586 29242798 -90502100 + L1ME LINE L1 5566 5789 -332 1757 138 0 44 chr13 29242802 29242934 -90501964 + AluJo SINE Alu 11 147 -165 2008 128 34 0 chr13 29242934 29243231 -90501667 + AluSx SINE Alu 5 311 -1 1757 138 0 44 chr13 29243231 29243395 -90501503 + AluJo SINE Alu 147 294 -18 878 142 0 8 chr13 29443583 29443717 -90301181 - AluJo/FLAM SINE Alu -169 133 1 994 147 32 0 chr13 29445563 29445719 -90299179 - MER20 DNA MER1_type -2 217 57 258 244 13 64 chr13 29445835 29445913 -90298985 - MIR SINE MIR -71 191 118 24 32 0 0 chr13 29446258 29446289 -90298609 + AT_rich Low_complexity Low_complexity 1 31 0 1932 107 9 63 chr13 29446336 29446655 -90298243 - AluSx SINE Alu -10 302 1 710 212 73 20 chr13 29446825 29446976 -90297922 - MER5B DNA MER1_type -3 175 17 360 339 144 10 chr13 29447635 29447830 -90297068 + MIR SINE MIR 29 249 -13 258 271 218 24 chr13 29448427 29448597 -90296301 - L1MC4 LINE L1 -203 7839 7637 303 278 62 21 chr13 29450434 29450531 -90294367 + L2 LINE L2 3209 3309 -4 2748 95 0 8 chr13 29451138 29451505 -90293393 - THE1B LTR MaLR 0 364 1 225 65 0 0 chr13 29452248 29452279 -90292619 + (CA)n Simple_repeat Simple_repeat 1 31 0 283 316 91 74 chr13 29452300 29452597 -90292301 + L2 LINE L2 2971 3272 0 1606 191 118 27 chr13 29452664 29453103 -90291795 - MLT1D LTR MaLR -1 496 9 220 33 0 0 chr13 29454518 29454548 -90290350 + MIR SINE MIR 107 136 -126 255 290 97 39 chr13 29454575 29454730 -90290168 + MIR SINE MIR 60 223 -39 509 246 87 0 chr13 29454889 29455027 -90289871 - MER103 DNA DNA -15 151 2 217 274 126 0 chr13 29455648 29455743 -90289155 - MIR SINE MIR -60 148 42 634 167 7 7 chr13 29455794 29455932 -90288966 + GA-rich Low_complexity Low_complexity 4 141 0 226 291 76 48 chr13 29456140 29456391 -90288507 + MLT1K LTR MaLR 183 440 -148 887 278 80 49 chr13 29456476 29456926 -90287972 - MER115 DNA AcHobo -116 577 114 337 220 84 21 chr13 29457146 29457278 -90287620 + MIR SINE MIR 82 226 -36 568 244 158 24 chr13 29457417 29457626 -90287272 + MIR SINE MIR 8 244 -18 1735 153 0 4 chr13 29458617 29458885 -90286013 + AluSg SINE Alu 1 267 -43 1511 139 60 4 chr13 29459007 29459273 -90285625 - L1MB3 LINE L1 -95 6088 5808 275 271 206 42 chr13 29459273 29459487 -90285411 + L2 LINE L2 2977 3225 -47 498 221 44 22 chr13 29460102 29460238 -90284660 + MIR SINE MIR 49 187 -75 21 0 0 0 chr13 29460733 29460754 -90284144 + AT_rich Low_complexity Low_complexity 1 21 0 276 241 0 0 chr13 29461156 29461210 -90283688 - Tigger3(Golem) DNA MER2_type -30 2999 2946 274 212 15 15 chr13 29462187 29462253 -90282645 - MIR3 SINE MIR -3 205 140 267 309 0 0 chr13 29462204 29462259 -90282639 - L3 LINE CR1 -15 1562 1508 * 193 222 0 25 chr13 29462653 29462734 -90282164 + CT-rich Low_complexity Low_complexity 4 82 0 1532 208 23 26 chr13 29464595 29464942 -90279956 + MLT1A2 LTR MaLR 25 370 -4 227 31 31 0 chr13 29466416 29466448 -90278450 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chr13 29466634 29466669 -90278229 + AT_rich Low_complexity Low_complexity 1 35 0 873 295 67 14 chr13 29466832 29467262 -90277636 - L1ME4a LINE L1 -190 5931 5479 200 305 43 14 chr13 29468716 29468857 -90276041 + MIR3 SINE MIR 57 201 -7 294 278 14 0 chr13 29469860 29469932 -90274966 - MIR SINE MIR -109 153 81 259 305 93 25 chr13 29470299 29470417 -90274481 + L2 LINE L2 3142 3267 -5 745 254 49 15 chr13 29470715 29470920 -90273978 + MLT1A2 LTR MaLR 163 374 0 300 266 37 46 chr13 29470989 29471098 -90273800 - L2 LINE L2 -2 3311 3204 414 252 53 30 chr13 29471158 29471289 -90273609 - MIR SINE MIR -112 150 17 237 299 103 17 chr13 29471600 29471717 -90273181 + MIR SINE MIR 61 187 -75 476 270 38 25 chr13 29471826 29471985 -90272913 + MIR SINE MIR 102 262 0 192 265 48 72 chr13 29472567 29472650 -90272248 + L2 LINE L2 1369 1449 -1865 2006 115 18 0 chr13 29472665 29472951 -90271947 - AluSx SINE Alu -21 291 1 341 242 15 0 chr13 29473739 29473805 -90271093 + L2 LINE L2 3206 3272 0 216 97 0 0 chr13 29473854 29473885 -90271013 + (A)n Simple_repeat Simple_repeat 1 31 0 2074 122 0 0 chr13 29474988 29475284 -90269614 + AluSq SINE Alu 1 296 -17 1463 184 19 8 chr13 29475711 29475977 -90268921 + MLT1A2 LTR MaLR 1 269 -105 248 282 129 45 chr13 29476146 29476348 -90268550 + L2 LINE L2 3094 3312 -1 417 338 42 7 chr13 29476434 29476576 -90268322 + L2 LINE L2 3162 3308 -5 * 501 254 27 0 chr13 29476574 29476684 -90268214 - L2 LINE L2 -12 3301 3189 1889 148 0 16 chr13 29476756 29477060 -90267838 - AluJb SINE Alu -11 301 3 1766 135 8 0 chr13 29478689 29478956 -90265942 - AluSq SINE Alu -44 269 1 2053 123 3 0 chr13 29479915 29480216 -90264682 + AluSx SINE Alu 1 302 -10 412 105 13 66 chr13 29480408 29480484 -90264414 - MER41A-int LTR ERV1 -5874 72 1 3973 103 13 14 chr13 29480484 29480604 -90264294 - MER41A LTR ERV1 0 554 435 1996 68 23 0 chr13 29480604 29480867 -90264031 + AluY SINE Alu 33 301 -10 3973 103 13 14 chr13 29480867 29481301 -90263597 - MER41A LTR ERV1 -119 435 1 1038 113 0 13 chr13 29481306 29481457 -90263441 + LOR1a LTR ERV1 349 497 0 3254 177 77 22 chr13 29481860 29482549 -90262349 + LTR8A LTR ERV1 1 727 0 23 33 0 0 chr13 29483149 29483179 -90261719 + AT_rich Low_complexity Low_complexity 1 30 0 2176 68 31 3 chr13 29483490 29483782 -90261116 + AluY SINE Alu 1 300 -11 235 313 0 0 chr13 29484005 29484069 -90260829 - L2 LINE L2 -253 3060 2997 2964 162 59 67 chr13 29484192 29484889 -90260009 + LTR8 LTR ERV1 1 691 0 604 194 19 0 chr13 29485255 29485363 -90259535 + MER2 DNA MER2_type 10 119 -226 351 254 0 0 chr13 29485432 29485499 -90259399 + MER2 DNA MER2_type 279 345 0 493 270 26 0 chr13 29486588 29486703 -90258195 + MIR SINE MIR 84 201 -61 2519 39 3 0 chr13 29487419 29487727 -90257171 + AluY SINE Alu 1 309 -2 248 202 35 28 chr13 29487903 29487975 -90256923 - MIR SINE MIR -60 148 58 315 273 87 40 chr13 29489062 29489212 -90255686 + MIR3 SINE MIR 6 162 -46 1917 13 105 4 chr13 29490581 29490820 -90254078 - AluYa5 SINE Alu 0 311 49 643 240 111 24 chr13 29490897 29491105 -90253793 + MIR SINE MIR 11 236 -26 2005 119 14 0 chr13 29491134 29491427 -90253471 + AluSx SINE Alu 1 297 -15 180 0 0 0 chr13 29491433 29491453 -90253445 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 368 298 136 35 chr13 29491635 29491701 -90253197 - MIR SINE MIR -14 248 190 2450 196 13 9 chr13 29491701 29492165 -90252733 + MLT1C LTR MaLR 1 466 -1 368 298 136 35 chr13 29492165 29492296 -90252602 - MIR SINE MIR -72 190 31 229 328 40 40 chr13 29493519 29493644 -90251254 - MIR SINE MIR -130 132 8 521 244 174 40 chr13 29493728 29494027 -90250871 + MLT1J2 LTR MaLR 112 450 0 635 238 290 3 chr13 29494854 29495140 -90249758 + L2 LINE L2 2123 2490 -824 4411 160 46 4 chr13 29495152 29495975 -90248923 - L1MB7 LINE L1 -69 6115 5258 1173 140 0 0 chr13 29495970 29496156 -90248742 + L1 LINE L1 5110 5295 -851 * 207 0 0 0 chr13 29496158 29496181 -90248717 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3431 231 85 18 chr13 29496188 29497281 -90247617 - L1MB7 LINE L1 -2036 4110 2945 906 259 50 4 chr13 29497427 29497666 -90247232 - MER46C DNA MER2_type -88 250 1 1035 275 59 53 chr13 29497666 29498383 -90246515 + L2 LINE L2 2534 3313 0 1683 158 37 72 chr13 29498430 29498834 -90246064 - MLT1B LTR MaLR 0 390 1 330 314 42 17 chr13 29500313 29500431 -90244467 - MIR SINE MIR -25 237 117 308 259 152 13 chr13 29500703 29500814 -90244084 + MIR SINE MIR 45 163 -45 730 187 8 0 chr13 29501029 29501294 -90243604 - AluSg/x SINE Alu 0 443 178 2168 112 0 10 chr13 29501507 29501821 -90243077 - AluSx SINE Alu -1 311 1 267 326 202 5 chr13 29502620 29502813 -90242085 - MIR SINE MIR -10 252 22 1704 163 3 14 chr13 29503311 29503600 -90241298 + AluJo SINE Alu 1 286 -26 21 0 0 0 chr13 29503600 29503621 -90241277 + AT_rich Low_complexity Low_complexity 1 21 0 2381 70 0 0 chr13 29503806 29504105 -90240793 + AluY SINE Alu 1 299 -12 2336 180 21 2 chr13 29504230 29504652 -90240246 - MSTB1 LTR MaLR -2 430 1 2005 110 205 6 chr13 29506205 29506561 -90238337 - MSTA LTR MaLR 0 428 2 2922 265 111 21 chr13 29506705 29508143 -90236755 - L2 LINE L2 -3 3310 1762 238 205 0 0 chr13 29508166 29508205 -90236693 + MIR SINE MIR 210 248 -14 288 279 200 21 chr13 29508394 29508534 -90236364 - MIR3 SINE MIR -21 187 23 186 103 0 0 chr13 29509423 29509452 -90235446 + (CTG)n Simple_repeat Simple_repeat 2 30 0 502 310 53 11 chr13 29509685 29509871 -90235027 + MIR SINE MIR 11 204 -58 338 260 13 13 chr13 29509871 29509948 -90234950 - MER5B DNA MER1_type -1 177 101 656 256 79 0 chr13 29509954 29510118 -90234780 + MER5B DNA MER1_type 2 178 0 346 262 0 0 chr13 29510406 29510490 -90234408 - MER5A DNA MER1_type -84 105 22 217 267 67 29 chr13 29510489 29510594 -90234304 + MIR SINE MIR 16 124 -138 * 291 199 16 31 chr13 29510887 29510977 -90233921 + MLT1K LTR MaLR 498 558 -30 552 273 0 27 chr13 29511014 29511164 -90233734 + MIR SINE MIR 97 242 -20 857 107 0 8 chr13 29512737 29512858 -90232040 + FLAM_C SINE Alu 1 120 -23 498 191 111 0 chr13 29512866 29512992 -90231906 + L1MB7 LINE L1 6033 6172 -12 352 315 50 87 chr13 29513061 29513359 -90231539 - HAL1 LINE L1 -1205 1302 1016 1324 216 83 18 chr13 29514005 29514283 -90230615 - AluJo SINE Alu -2 300 5 336 208 58 83 chr13 29515155 29515275 -90229623 + MLT1L LTR MaLR 207 323 -292 203 147 0 0 chr13 29515275 29515309 -90229589 + (TG)n Simple_repeat Simple_repeat 1 34 0 428 303 46 23 chr13 29515358 29515533 -90229365 + MLT1L LTR MaLR 350 528 -87 899 171 42 105 chr13 29515579 29515666 -90229232 - MIR SINE MIR 0 262 171 1806 154 0 13 chr13 29515666 29515964 -90228934 - AluSx SINE Alu -18 294 1 899 171 42 105 chr13 29515964 29516115 -90228783 - MIR SINE MIR -91 171 39 2271 105 0 6 chr13 29516516 29516830 -90228068 - AluSx SINE Alu 0 312 1 413 227 160 0 chr13 29518139 29518258 -90226640 - FLAM_C SINE Alu 0 143 6 279 0 0 0 chr13 29518665 29518696 -90226202 + (TG)n Simple_repeat Simple_repeat 2 32 0 924 286 42 18 chr13 29518900 29519236 -90225662 + L3 LINE CR1 540 883 -694 330 294 101 17 chr13 29519324 29519443 -90225455 + L3 LINE CR1 1136 1264 -313 422 174 60 0 chr13 29520096 29520263 -90224635 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 190 321 60 12 chr13 29520618 29520702 -90224196 - L2 LINE L2 -469 2845 2758 1169 268 65 45 chr13 29520807 29521339 -90223559 + L2 LINE L2 2774 3308 -5 680 239 147 38 chr13 29521568 29521882 -90223016 + MER7A DNA MER2_type 1 346 0 234 283 0 22 chr13 29523423 29523515 -90221383 + (TG)n Simple_repeat Simple_repeat 1 90 0 197 206 0 14 chr13 29523528 29523601 -90221297 + (TG)n Simple_repeat Simple_repeat 1 72 0 392 283 0 23 chr13 29523645 29523822 -90221076 + (TG)n Simple_repeat Simple_repeat 2 174 0 459 264 0 16 chr13 29523864 29524046 -90220852 + (TG)n Simple_repeat Simple_repeat 1 179 0 331 326 0 11 chr13 29524058 29524233 -90220665 + (TG)n Simple_repeat Simple_repeat 1 173 0 437 294 0 27 chr13 29524352 29524727 -90220171 + (TG)n Simple_repeat Simple_repeat 1 364 0 411 252 6 23 chr13 29524912 29525407 -90219491 + (TG)n Simple_repeat Simple_repeat 1 486 0 1421 159 57 70 chr13 29527879 29528194 -90216704 + AluJo SINE Alu 1 311 -1 813 256 242 3 chr13 29528324 29528687 -90216211 + MLT1J2 LTR MaLR 1 450 0 811 230 9 71 chr13 29529673 29529899 -90214999 - MIR SINE MIR -25 237 26 182 309 0 0 chr13 29530768 29530810 -90214088 + L2 LINE L2 3211 3252 -20 192 167 167 0 chr13 29531430 29531484 -90213414 - MIR3 SINE MIR -41 167 105 186 103 0 0 chr13 29532582 29532611 -90212287 + (CAG)n Simple_repeat Simple_repeat 3 31 0 613 239 7 0 chr13 29533842 29533980 -90210918 - MER105 DNA DNA -20 184 46 1815 137 0 20 chr13 29535673 29535965 -90208933 - AluJo SINE Alu -16 296 11 522 259 49 27 chr13 29536185 29536370 -90208528 + MIR SINE MIR 2 190 -72 399 17 50 0 chr13 29536716 29536776 -90208122 + (TG)n Simple_repeat Simple_repeat 1 63 0 288 137 0 0 chr13 29537897 29537948 -90206950 + (TA)n Simple_repeat Simple_repeat 1 51 0 328 307 111 33 chr13 29538217 29538540 -90206358 - L1M4 LINE L1 -1076 5070 4774 1573 174 0 27 chr13 29538540 29538834 -90206064 - AluJo SINE Alu -22 290 5 328 307 111 33 chr13 29538834 29539061 -90205837 - L1M4 LINE L1 -1372 4774 4477 3449 264 60 54 chr13 29539433 29540463 -90204435 + L2 LINE L2 623 1663 -1651 1639 174 6 25 chr13 29540463 29540780 -90204118 + AluJo SINE Alu 1 311 -1 3449 264 60 54 chr13 29540780 29541093 -90203805 + L2 LINE L2 1663 1973 -1341 252 356 63 23 chr13 29541256 29541430 -90203468 + L2 LINE L2 3103 3283 -30 1892 145 47 33 chr13 29542105 29542464 -90202434 + THE1B LTR MaLR 1 364 0 822 241 58 75 chr13 29542633 29542928 -90201970 - L2 LINE L2 0 3313 3024 203 200 108 46 chr13 29543512 29543577 -90201321 + L3 LINE CR1 1380 1448 -129 271 310 69 37 chr13 29545100 29545316 -90199582 - L2 LINE L2 -791 2523 2301 390 253 48 89 chr13 29545791 29546060 -90198838 + L2 LINE L2 2914 3171 -142 242 33 0 0 chr13 29546136 29546166 -90198732 - HSMAR1 DNA Mariner -1257 30 1 311 265 30 90 chr13 29546201 29546401 -90198497 + L2 LINE L2 3123 3310 -3 199 339 17 35 chr13 29546453 29546568 -90198330 - L2 LINE L2 -168 3104 2992 1160 280 223 24 chr13 29546745 29547666 -90197232 - L2 LINE L2 -978 2336 1233 370 242 194 16 chr13 29548238 29548362 -90196536 - MIR SINE MIR 0 262 117 455 177 10 0 chr13 29549920 29550016 -90194882 + GA-rich Low_complexity Low_complexity 3 99 0 545 216 85 51 chr13 29550267 29550443 -90194455 + MLT1B LTR MaLR 7 188 -186 815 254 30 0 chr13 29550472 29550669 -90194229 + MLT1B LTR MaLR 188 390 0 353 240 140 33 chr13 29550878 29551028 -90193870 - MIR SINE MIR 0 262 97 386 298 161 53 chr13 29551076 29551492 -90193406 - L2 LINE L2 -1 3271 2811 237 336 21 21 chr13 29551630 29551770 -90193128 - MIR SINE MIR -73 189 50 387 0 0 0 chr13 29552112 29552155 -90192743 + (CAGGG)n Simple_repeat Simple_repeat 1 43 0 220 301 27 14 chr13 29552442 29552515 -90192383 - L2 LINE L2 -6 3307 3234 198 339 62 0 chr13 29552722 29552787 -90192111 + L2 LINE L2 3187 3255 -17 * 207 107 0 0 chr13 29552761 29552789 -90192109 + MIR SINE MIR 226 253 -9 458 289 21 7 chr13 29553687 29553829 -90191069 + MIR SINE MIR 119 262 0 39 95 0 0 chr13 29554326 29554442 -90190456 + AT_rich Low_complexity Low_complexity 1 116 0 28 0 0 0 chr13 29554719 29554747 -90190151 + AT_rich Low_complexity Low_complexity 1 28 0 430 288 131 49 chr13 29554896 29555202 -90189696 - MARNA DNA Mariner -131 455 125 1895 135 3 25 chr13 29555361 29555679 -90189219 - AluSx SINE Alu -1 311 1 340 314 152 0 chr13 29556040 29556145 -90188753 + L2 LINE L2 3151 3271 -1 545 284 16 31 chr13 29557138 29557300 -90187598 - MIR SINE MIR -62 146 30 1872 148 10 6 chr13 29557571 29557882 -90187016 - AluSx SINE Alu 0 312 1 225 344 44 0 chr13 29558916 29559006 -90185892 + L3 LINE CR1 1214 1307 -270 1967 247 112 17 chr13 29559011 29559482 -90185416 + MLT1E LTR MaLR 8 537 -56 1687 125 8 4 chr13 29559482 29559730 -90185168 + AluSq SINE Alu 48 296 -17 1967 247 112 17 chr13 29559730 29559793 -90185105 + MLT1E LTR MaLR 537 593 0 622 317 53 15 chr13 29559793 29560058 -90184840 + L3 LINE CR1 1302 1576 -1 236 362 101 29 chr13 29560850 29560988 -90183910 - L2 LINE L2 -4 3268 3121 1587 273 50 0 chr13 29561341 29561737 -90183161 + MLT1J LTR MaLR 96 511 0 488 341 49 31 chr13 29561737 29561960 -90182938 + MIR SINE MIR 26 252 -10 410 285 38 38 chr13 29562108 29562294 -90182604 + L2 LINE L2 2904 3089 -183 941 73 0 7 chr13 29562399 29562535 -90182363 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 2201 136 25 17 chr13 29562706 29563067 -90181831 + MLT1A1 LTR MaLR 2 365 0 24 0 0 0 chr13 29563345 29563369 -90181529 + AT_rich Low_complexity Low_complexity 1 24 0 2248 98 3 0 chr13 29563528 29563833 -90181065 - AluSp SINE Alu -7 306 1 1976 84 29 0 chr13 29565836 29566147 -90178751 + AluY SINE Alu 1 319 0 880 228 53 15 chr13 29568339 29568545 -90176353 - MIR SINE MIR -2 260 47 441 264 62 0 chr13 29569272 29569401 -90175497 - MIR3 SINE MIR -12 196 60 373 252 111 75 chr13 29569839 29570065 -90174833 + MLT1H LTR MaLR 109 342 -207 245 227 17 62 chr13 29570090 29570229 -90174669 + MLT1I LTR MaLR 348 409 0 465 237 90 34 chr13 29570397 29570574 -90174324 + MER112 DNA MER1_type 66 252 -8 231 324 14 27 chr13 29570625 29570699 -90174199 + L2 LINE L2 3200 3272 0 266 313 14 61 chr13 29570930 29571077 -90173821 + L2 LINE L2 3132 3271 -1 225 292 180 0 chr13 29571075 29571164 -90173734 + MIR3 SINE MIR 98 202 -6 * 1141 119 0 0 chr13 29572016 29572184 -90172714 - L1M3 LINE L1 -594 5740 5573 * 1364 150 65 56 chr13 29572174 29572321 -90172577 + L1MA10 LINE L1 6025 6169 -165 378 0 0 0 chr13 29572321 29572363 -90172535 + (CA)n Simple_repeat Simple_repeat 2 43 0 1364 150 65 56 chr13 29572363 29572521 -90172377 + L1MA10 LINE L1 6169 6333 -1 360 280 133 14 chr13 29573178 29573321 -90171577 + L2 LINE L2 2993 3152 -120 693 185 0 15 chr13 29574553 29574688 -90170210 + FLAM_A SINE Alu 1 133 0 2388 47 0 3 chr13 29575536 29575832 -90169066 + AluY SINE Alu 2 296 -15 2295 80 0 3 chr13 29575964 29576265 -90168633 - AluSc SINE Alu -9 300 1 427 284 43 35 chr13 29576648 29576789 -90168109 + MIR SINE MIR 120 261 -1 337 315 79 45 chr13 29577456 29577515 -90167383 + MIR3 SINE MIR 4 60 -148 1340 218 44 7 chr13 29577515 29577813 -90167085 - AluJb SINE Alu -3 309 1 337 315 79 45 chr13 29577813 29577931 -90166967 + MIR3 SINE MIR 60 187 -21 409 277 27 0 chr13 29579784 29579896 -90165002 + MIR3 SINE MIR 68 182 -26 214 262 0 0 chr13 29581133 29581175 -90163723 + polypyrimidine Low_complexity Low_complexity 2 43 0 513 265 80 33 chr13 29581496 29581688 -90163210 + MLT1H LTR MaLR 22 210 -339 326 226 57 48 chr13 29581811 29581935 -90162963 + MLT1H LTR MaLR 423 547 -2 233 211 74 74 chr13 29582408 29582503 -90162395 - L2 LINE L2 0 3313 3219 1220 276 72 21 chr13 29582522 29582950 -90161948 - L2 LINE L2 -835 2479 2030 824 266 84 60 chr13 29582952 29582976 -90161922 + MLT1L LTR MaLR 4 26 -589 2806 128 17 7 chr13 29582976 29583398 -90161500 - MSTB LTR MaLR 0 426 1 824 266 84 60 chr13 29583398 29583787 -90161111 + MLT1L LTR MaLR 26 427 -188 316 248 80 8 chr13 29583807 29583932 -90160966 + MLT1L LTR MaLR 481 614 -1 2349 80 0 6 chr13 29584897 29585210 -90159688 - AluSp SINE Alu 0 313 3 5525 30 3 0 chr13 29585228 29585868 -90159030 - L1PA4 LINE L1 0 6155 5514 1545 258 144 17 chr13 29586357 29587069 -90157829 + L2 LINE L2 2346 3128 -185 271 296 80 28 chr13 29587119 29587295 -90157603 + L2 LINE L2 3091 3275 -38 1089 40 213 35 chr13 29587602 29587776 -90157122 - AluY SINE Alu -106 205 1 344 211 196 31 chr13 29587802 29587996 -90156902 - L1ME4a LINE L1 -171 5950 5725 745 267 67 51 chr13 29588020 29588376 -90156522 + MER83C LTR ERV1 2 363 -10 289 267 81 93 chr13 29588477 29588528 -90156370 - L1ME4a LINE L1 -530 5591 5541 1913 220 48 22 chr13 29588528 29588983 -90155915 + MLT1C LTR MaLR 1 467 0 289 267 81 93 chr13 29588983 29589351 -90155547 - L1ME4a LINE L1 -580 5541 5055 1068 40 0 0 chr13 29589362 29589487 -90155411 - L1PA8 LINE L1 -491 5681 5557 3629 84 2 6 chr13 29589487 29589971 -90154927 + L1PA8 LINE L1 5686 6172 0 945 306 34 78 chr13 29589972 29590507 -90154391 - L1ME4a LINE L1 -1100 5046 4543 2324 49 0 3 chr13 29590507 29590819 -90154079 - AluY SINE Alu 0 311 1 945 306 34 78 chr13 29590819 29590953 -90153945 - L1ME4a LINE L1 -1603 4543 4405 294 235 83 53 chr13 29591192 29591324 -90153574 + MER102a DNA MER1_type 33 168 -162 427 260 76 48 chr13 29591334 29591668 -90153230 + L1ME1 LINE L1 57 733 -5689 543 243 57 0 chr13 29591889 29592029 -90152869 + L1ME1 LINE L1 816 963 -5460 2072 115 23 0 chr13 29592074 29592378 -90152520 + AluSx SINE Alu 1 311 -1 3283 237 38 30 chr13 29592380 29593448 -90151450 + L1ME1 LINE L1 3161 4237 -2704 256 214 0 0 chr13 29593491 29593533 -90151365 + AluJ/monomer SINE Alu 2 43 -257 873 197 10 43 chr13 29593556 29593764 -90151134 + L1ME1 LINE L1 4596 4796 -2145 724 223 5 5 chr13 29593796 29594067 -90150831 + L1ME1 LINE L1 5970 6239 -743 3000 142 129 5 chr13 29594090 29594655 -90150243 + LTR24C LTR ERV1 1 635 0 1827 214 86 72 chr13 29594658 29594873 -90150025 + L1ME1 LINE L1 6267 6478 -483 2006 135 6 6 chr13 29594873 29595184 -90149714 + AluSx SINE Alu 1 311 -1 1827 214 86 72 chr13 29595184 29595608 -90149290 + L1ME1 LINE L1 6478 6915 -46 1136 263 14 10 chr13 29595759 29596052 -90148846 - MER87 LTR ERV1 -50 491 198 257 185 37 139 chr13 29596201 29596309 -90148589 + MER102a DNA MER1_type 210 306 -24 2996 223 44 58 chr13 29596329 29596983 -90147915 + MER21B LTR ERV1 12 654 -209 2908 179 70 49 chr13 29596983 29597658 -90147240 - LTR8 LTR ERV1 0 691 3 2996 223 44 58 chr13 29597658 29597855 -90147043 + MER21B LTR ERV1 654 852 -11 216 211 0 0 chr13 29597961 29597999 -90146899 + L2 LINE L2 3035 3072 -200 23 0 0 0 chr13 29598653 29598676 -90146222 + AT_rich Low_complexity Low_complexity 1 23 0 25 99 0 0 chr13 29598765 29598846 -90146052 + AT_rich Low_complexity Low_complexity 1 81 0 366 292 41 59 chr13 29598900 29599119 -90145779 + LTR33 LTR ERVL 1 215 -306 553 259 120 0 chr13 29599391 29599549 -90145349 - MER5B DNA MER1_type -1 177 1 6396 137 174 7 chr13 29599840 29600935 -90143963 + MER52C LTR ERV1 1 1278 0 1046 9 0 0 chr13 29601287 29601403 -90143495 - AluYb8 SINE Alu -3 315 200 595 245 49 12 chr13 29601674 29601837 -90143061 - MLT1H LTR MaLR -379 170 2 1140 180 14 5 chr13 29602080 29602297 -90142601 + L1MC3 LINE L1 5982 6200 -1585 477 281 40 58 chr13 29602532 29602756 -90142142 + L2 LINE L2 2807 3026 -287 358 185 176 28 chr13 29602769 29602877 -90142021 + L2 LINE L2 3180 3303 -10 222 37 0 0 chr13 29603233 29603260 -90141638 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 198 71 0 0 chr13 29603348 29603376 -90141522 + (TG)n Simple_repeat Simple_repeat 1 28 0 503 296 62 48 chr13 29603801 29604173 -90140725 + L1 LINE L1 2254 2630 -3516 240 271 42 42 chr13 29604370 29604488 -90140410 + L1 LINE L1 2894 3011 -3135 331 328 145 15 chr13 29604938 29605159 -90139739 + MIR SINE MIR 2 250 -12 267 196 19 93 chr13 29605297 29605404 -90139494 + MIR3 SINE MIR 79 177 -31 225 0 0 0 chr13 29605413 29605438 -90139460 + (TA)n Simple_repeat Simple_repeat 1 25 0 1775 125 110 0 chr13 29605438 29605702 -90139196 - AluSx SINE Alu -19 293 1 207 146 0 0 chr13 29605887 29605928 -90138970 + (TG)n Simple_repeat Simple_repeat 2 42 0 2878 190 36 60 chr13 29606032 29606633 -90138265 - L1ME2 LINE L1 0 6164 5581 2105 141 0 6 chr13 29606633 29606945 -90137953 + AluSx SINE Alu 1 310 -2 2878 190 36 60 chr13 29606945 29607065 -90137833 - L1ME2 LINE L1 -583 5581 5460 216 343 102 73 chr13 29607293 29607567 -90137331 + L2 LINE L2 2925 3206 -66 204 135 0 0 chr13 29608111 29608148 -90136750 + (TC)n Simple_repeat Simple_repeat 2 38 0 462 18 0 0 chr13 29609356 29609411 -90135487 + (CA)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr13 29609795 29609818 -90135080 + AT_rich Low_complexity Low_complexity 1 23 0 2550 149 171 21 chr13 29611010 29611526 -90133372 + LTR49 LTR ERV1 1 593 -2 477 318 199 12 chr13 29611888 29612300 -90132598 + L3 LINE CR1 1078 1566 -11 2234 109 0 3 chr13 29612842 29613145 -90131753 + AluSq SINE Alu 12 313 0 399 113 113 14 chr13 29613647 29613718 -90131180 - MER53 DNA DNA 0 189 112 327 197 92 0 chr13 29613659 29613735 -90131163 + MER53 DNA DNA 23 105 -84 * 343 104 0 0 chr13 29613741 29613789 -90131109 - MER53 DNA DNA -137 52 5 2225 191 31 8 chr13 29614577 29614964 -90129934 + MSTD LTR MaLR 1 396 0 221 299 13 39 chr13 29615224 29615301 -90129597 - MER5A DNA MER1_type -2 187 113 * 244 281 55 62 chr13 29615247 29615393 -90129505 + MER5A DNA MER1_type 36 180 -9 185 288 178 0 chr13 29615853 29615926 -90128972 + L2 LINE L2 3187 3272 0 2346 88 0 19 chr13 29616442 29616759 -90128139 + AluY SINE Alu 1 311 0 285 316 123 48 chr13 29617123 29617433 -90127465 - L2 LINE L2 -337 2977 2645 420 305 121 8 chr13 29617567 29617922 -90126976 - L2 LINE L2 -1028 2286 1822 929 260 96 122 chr13 29618024 29618710 -90126188 + HAL1 LINE L1 150 852 -1655 231 238 0 0 chr13 29618710 29618752 -90126146 - MER69 DNA AcHobo -135 42 1 929 260 96 122 chr13 29618752 29619025 -90125873 + HAL1 LINE L1 852 1122 -1385 1842 152 26 19 chr13 29619025 29619334 -90125564 + AluSx SINE Alu 1 311 -1 929 260 96 122 chr13 29619334 29619422 -90125476 + HAL1 LINE L1 1122 1211 -1296 1506 213 106 24 chr13 29619426 29619843 -90125055 - HAL1 LINE L1 -806 1701 1251 717 253 104 65 chr13 29619886 29620393 -90124505 + HAL1 LINE L1 1980 2506 -1 556 234 82 43 chr13 29620498 29620682 -90124216 + MIR SINE MIR 35 225 -37 316 256 54 107 chr13 29620684 29620926 -90123972 - L2 LINE L2 -1545 1769 1541 396 259 17 26 chr13 29621725 29621841 -90123057 - L2 LINE L2 0 3272 3158 337 325 117 64 chr13 29621885 29622505 -90122393 + L2 LINE L2 2560 3222 -50 3853 15 0 0 chr13 29623140 29623552 -90121346 + L1PA4 LINE L1 5741 6152 -3 1316 267 70 11 chr13 29623582 29624054 -90120844 + L2 LINE L2 1337 1836 -1478 661 227 117 43 chr13 29624123 29624285 -90120613 - L1MC5 LINE L1 -487 7474 7285 1556 81 90 0 chr13 29624285 29624496 -90120402 - MER30 DNA MER1_type 0 230 1 661 227 117 43 chr13 29624496 29624589 -90120309 - L1MC5 LINE L1 -676 7285 7200 1586 197 3 14 chr13 29624812 29625096 -90119802 + AluJo SINE Alu 1 281 -31 367 202 46 29 chr13 29625099 29625249 -90119649 + (TA)n Simple_repeat Simple_repeat 2 157 -20 387 0 0 0 chr13 29625249 29625292 -90119606 + (TG)n Simple_repeat Simple_repeat 2 44 0 367 202 46 29 chr13 29625292 29625314 -90119584 + (TA)n Simple_repeat Simple_repeat 157 177 0 517 280 105 25 chr13 29625384 29625670 -90119228 + L2 LINE L2 2218 2526 -788 206 315 92 15 chr13 29625817 29625947 -90118951 - L2 LINE L2 -192 3080 2941 792 225 0 6 chr13 29625993 29626162 -90118736 + L1MB5 LINE L1 5677 5844 -330 1630 158 79 7 chr13 29626233 29626536 -90118362 + L1MB5 LINE L1 5850 6174 0 28 71 0 0 chr13 29627116 29627172 -90117726 + AT_rich Low_complexity Low_complexity 1 56 0 1609 239 65 62 chr13 29627182 29628035 -90116863 + L1MC5 LINE L1 7059 7913 -48 1686 147 3 28 chr13 29628198 29628484 -90116414 - AluJo SINE Alu -14 298 20 6187 219 112 77 chr13 29628538 29629223 -90115675 + Charlie2a DNA MER1_type 79 739 -2123 1666 127 0 0 chr13 29629223 29629444 -90115454 - AluSx SINE Alu -89 223 3 6187 219 112 77 chr13 29629444 29630371 -90114527 + Charlie2a DNA MER1_type 739 1632 -1230 7840 43 0 0 chr13 29630371 29631828 -90113070 + L1PA4 LINE L1 4699 6152 -3 6187 219 112 77 chr13 29631828 29632811 -90112087 + Charlie2a DNA MER1_type 1632 2765 -97 14313 195 34 20 chr13 29632811 29638073 -90106825 + L1PB3 LINE L1 800 6210 -1 467 256 130 14 chr13 29638372 29638579 -90106319 - MIR SINE MIR -29 233 3 1529 119 0 0 chr13 29638610 29638828 -90106070 - AluSg/x SINE Alu -8 302 85 2620 61 0 0 chr13 29638937 29639247 -90105651 + AluY SINE Alu 1 310 -1 233 253 53 0 chr13 29640104 29640179 -90104719 - HAL1b LINE L1 -13 1335 1257 850 251 98 4 chr13 29640607 29640882 -90104016 - L2 LINE L2 -1093 2221 1921 1233 185 177 48 chr13 29640885 29641264 -90103634 + MSTC LTR MaLR 1 428 0 310 298 25 0 chr13 29642141 29642262 -90102636 - MER117 DNA MER1_type -35 162 39 719 219 89 33 chr13 29643469 29643663 -90101235 + MLT1D LTR MaLR 27 209 -296 7242 115 61 66 chr13 29643663 29644946 -90099952 - MER52C LTR ERV1 -2 1276 1 719 219 89 33 chr13 29644946 29645139 -90099759 + MLT1D LTR MaLR 209 505 0 513 305 108 40 chr13 29645471 29645822 -90099076 - L2 LINE L2 -933 2381 2007 492 194 100 65 chr13 29647905 29648075 -90096823 + LTR45B LTR ERV1 313 488 -1 193 269 115 0 chr13 29648780 29648858 -90096040 + MIR SINE MIR 108 194 -68 205 278 96 9 chr13 29649163 29649278 -90095620 - L2 LINE L2 -229 3043 2919 1745 181 13 3 chr13 29649670 29649969 -90094929 + AluJo SINE Alu 1 302 -10 243 328 0 0 chr13 29649988 29650055 -90094843 + (CACG)n Simple_repeat Simple_repeat 4 70 0 287 206 29 0 chr13 29650374 29650442 -90094456 - MER5A DNA MER1_type -77 112 43 333 246 239 0 chr13 29650484 29650614 -90094284 + MER5A DNA MER1_type 29 189 0 1883 189 25 3 chr13 29650909 29651263 -90093635 - MLT2D LTR ERVL -52 362 1 189 0 0 0 chr13 29651587 29651608 -90093290 + (T)n Simple_repeat Simple_repeat 1 21 0 928 143 0 0 chr13 29651608 29651741 -90093157 - AluJb SINE Alu -179 133 1 710 242 150 39 chr13 29651876 29651943 -90092955 - MARNA DNA Mariner -55 531 473 2278 111 53 8 chr13 29651943 29652302 -90092596 - THE1C LTR MaLR 0 375 1 710 242 150 39 chr13 29652302 29652494 -90092404 - MARNA DNA Mariner -113 473 243 219 36 0 0 chr13 29652513 29652541 -90092357 + (A)n Simple_repeat Simple_repeat 1 28 0 2228 117 0 0 chr13 29652679 29652991 -90091907 + AluSq SINE Alu 2 313 0 339 236 63 47 chr13 29653118 29653245 -90091653 + L2 LINE L2 3184 3312 -1 328 244 6 6 chr13 29656078 29656238 -90088660 + GA-rich Low_complexity Low_complexity 2 161 0 203 229 0 0 chr13 29656240 29656275 -90088623 + polypurine Low_complexity Low_complexity 2 36 0 2184 120 0 16 chr13 29656349 29656666 -90088232 + AluSx SINE Alu 1 312 0 2332 90 7 0 chr13 29657016 29657315 -90087583 + AluSq SINE Alu 1 301 -12 26 30 0 0 chr13 29657453 29657486 -90087412 + AT_rich Low_complexity Low_complexity 1 33 0 1868 154 20 10 chr13 29658957 29659256 -90085642 - AluJo SINE Alu 0 312 11 517 270 59 7 chr13 29660139 29660291 -90084607 + MER91B DNA MER1_type 23 182 -8 227 191 0 0 chr13 29661141 29661183 -90083715 + MIR SINE MIR 119 160 -102 2465 107 123 5 chr13 29661664 29662047 -90082851 + MSTA LTR MaLR 1 428 0 451 288 58 47 chr13 29662656 29662847 -90082051 - L3 LINE CR1 -675 902 710 183 173 19 58 chr13 29664050 29664102 -90080796 - L2 LINE L2 0 3313 3264 2170 115 0 3 chr13 29665497 29665810 -90079088 - AluSx SINE Alu 0 312 1 1734 160 0 54 chr13 29666036 29666349 -90078549 + AluJo SINE Alu 1 296 -16 305 284 154 18 chr13 29666461 29666630 -90078268 + MIR SINE MIR 57 248 -14 234 0 0 0 chr13 29667036 29667062 -90077836 + (TG)n Simple_repeat Simple_repeat 2 27 0 297 286 143 0 chr13 29667475 29667594 -90077304 - L2 LINE L2 0 3272 3137 423 214 255 7 chr13 29667644 29667789 -90077109 + MER5A DNA MER1_type 9 189 0 223 285 89 0 chr13 29668271 29668394 -90076504 + MIR SINE MIR 81 214 -48 411 247 0 0 chr13 29668412 29668509 -90076389 - MIR SINE MIR -103 159 63 294 269 77 0 chr13 29669031 29669135 -90075763 + MIR SINE MIR 46 157 -105 300 27 0 0 chr13 29669350 29669387 -90075511 + (TG)n Simple_repeat Simple_repeat 2 38 0 1843 157 30 10 chr13 29670428 29670728 -90074170 - AluJb SINE Alu -6 306 1 419 111 0 14 chr13 29670820 29670892 -90074006 + (GGGA)n Simple_repeat Simple_repeat 4 74 0 25 31 0 0 chr13 29672846 29672878 -90072020 + GC_rich Low_complexity Low_complexity 1 32 0 655 348 79 19 chr13 29675081 29675714 -90069184 - L2 LINE L2 -466 2848 2178 181 311 0 0 chr13 29675704 29675749 -90069149 - MIR SINE MIR -172 90 46 * 234 241 157 0 chr13 29675760 29675843 -90069055 - L2 LINE L2 -9 3263 3168 2210 129 0 0 chr13 29676268 29676562 -90068336 + AluSq SINE Alu 1 294 -19 581 313 95 16 chr13 29677014 29677382 -90067516 - L1ME4a LINE L1 -195 5926 5530 410 301 93 31 chr13 29677735 29678024 -90066874 + L2 LINE L2 1649 1955 -1359 297 275 11 11 chr13 29678114 29678205 -90066693 + MIR SINE MIR 61 151 -111 332 260 285 10 chr13 29678215 29678415 -90066483 + MIR SINE MIR 2 256 -6 224 350 118 3 chr13 29678593 29678882 -90066016 + L2 LINE L2 2175 2496 -818 1015 212 35 35 chr13 29679091 29679350 -90065548 + MLT1B LTR MaLR 19 277 -113 1963 141 85 32 chr13 29679354 29679730 -90065168 + MSTD LTR MaLR 1 396 0 244 203 34 0 chr13 29680210 29680269 -90064629 + MIR SINE MIR 197 257 -5 1363 248 68 31 chr13 29681151 29681607 -90063291 + MER74B LTR ERVL 75 547 -75 451 259 79 42 chr13 29681932 29682121 -90062777 - MIR SINE MIR -3 259 64 371 250 25 0 chr13 29682215 29682295 -90062603 + MER58B DNA MER1_type 1 82 -259 267 114 0 23 chr13 29682298 29682342 -90062556 - L1 LINE L1 -1544 4602 4560 1175 210 36 20 chr13 29682342 29682594 -90062304 + MER58B DNA MER1_type 86 341 0 207 114 0 0 chr13 29682847 29682882 -90062016 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 893 250 9 0 chr13 29684113 29684329 -90060569 + MIR SINE MIR 12 229 -33 293 272 10 19 chr13 29684344 29684447 -90060451 + (TA)n Simple_repeat Simple_repeat 2 103 0 347 336 112 27 chr13 29684728 29684987 -90059911 - L1ME4a LINE L1 -576 5545 5265 186 43 0 0 chr13 29685086 29685109 -90059789 + (TG)n Simple_repeat Simple_repeat 2 24 0 2572 71 0 0 chr13 29685374 29685685 -90059213 - AluY SINE Alu 0 311 1 280 279 186 16 chr13 29687031 29687160 -90057738 - MIR SINE MIR -92 170 20 2466 83 0 3 chr13 29687736 29688038 -90056860 + AluSq SINE Alu 1 301 -12 262 235 91 61 chr13 29688422 29688554 -90056344 + MIR SINE MIR 65 200 -62 816 323 34 39 chr13 29688612 29689077 -90055821 - MLT1K LTR MaLR -24 564 102 21 0 0 0 chr13 29689451 29689472 -90055426 + AT_rich Low_complexity Low_complexity 1 21 0 932 277 97 28 chr13 29689993 29690389 -90054509 - MER57B LTR ERV1 0 434 13 1817 143 4 4 chr13 29690836 29691108 -90053790 + AluSx SINE Alu 1 272 -40 207 0 0 0 chr13 29691114 29691137 -90053761 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2236 115 0 7 chr13 29691527 29691823 -90053075 + AluSq SINE Alu 1 294 -19 861 271 79 51 chr13 29691873 29692445 -90052453 + HAL1 LINE L1 1126 1713 -794 2172 93 3 17 chr13 29693014 29693304 -90051594 + AluSx SINE Alu 16 301 -11 3375 124 2 71 chr13 29693308 29693589 -90051309 - MER4B LTR ERV1 -61 549 329 2060 129 7 0 chr13 29693589 29693883 -90051015 + AluSx SINE Alu 5 300 -12 3375 124 2 71 chr13 29693883 29694191 -90050707 - MER4B LTR ERV1 -281 329 1 1795 126 22 0 chr13 29694191 29694468 -90050430 - L1MB3 LINE L1 -271 5912 5630 2998 176 16 60 chr13 29694469 29695098 -90049800 + LTR9 LTR ERV1 1 601 -11 2092 112 24 19 chr13 29695107 29695494 -90049404 - L1MB3 LINE L1 -546 5634 5283 1594 172 17 24 chr13 29695494 29695791 -90049107 - AluJo SINE Alu -17 295 1 2092 112 24 19 chr13 29695791 29695902 -90048996 - L1MB3 LINE L1 -897 5283 5174 22 70 0 0 chr13 29696186 29696229 -90048669 + AT_rich Low_complexity Low_complexity 1 43 0 217 333 43 11 chr13 29698899 29698992 -90045906 + L3b LINE CR1 1368 1463 -120 432 270 0 0 chr13 29699614 29699714 -90045184 - MIR SINE MIR -33 229 130 660 217 94 57 chr13 29699996 29700208 -90044690 - MIR SINE MIR 0 262 43 251 268 41 21 chr13 29700790 29700887 -90044011 - MER94 DNA DNA -34 100 2 1827 166 0 25 chr13 29700956 29701275 -90043623 + AluJb SINE Alu 1 311 -1 2637 56 0 0 chr13 29702467 29702771 -90042127 - AluY SINE Alu -7 304 1 1018 54 78 0 chr13 29702855 29702984 -90041914 + MER85 DNA T2_type 1 139 0 184 203 63 101 chr13 29703583 29703662 -90041236 - L2 LINE L2 -10 3262 3187 1167 241 75 50 chr13 29703662 29704118 -90040780 + MLT1C LTR MaLR 1 467 0 1682 154 0 30 chr13 29704195 29704461 -90040437 + AluJo SINE Alu 16 273 -39 256 345 108 21 chr13 29709315 29709509 -90035389 - MIR SINE MIR -32 230 20 328 333 120 30 chr13 29710120 29710585 -90034313 + L2 LINE L2 1998 2504 -810 231 299 15 0 chr13 29710636 29710703 -90034195 - MIR SINE MIR -72 190 123 1959 135 0 4 chr13 29710708 29710982 -90033916 + AluSx SINE Alu 3 275 -37 1917 140 49 0 chr13 29711021 29711307 -90033591 + AluJo SINE Alu 1 300 -12 402 297 0 0 chr13 29711307 29711408 -90033490 - MIR SINE MIR -131 131 31 224 179 90 30 chr13 29711478 29711545 -90033353 - MIR SINE MIR -63 145 75 442 341 27 23 chr13 29711680 29711900 -90032998 + L3b LINE CR1 1299 1519 -64 585 271 28 14 chr13 29711971 29712189 -90032709 + MER102b DNA MER1_type 119 339 -2 1754 190 104 40 chr13 29715926 29716425 -90028473 - MER74A LTR ERVL -27 531 1 2105 83 36 53 chr13 29717412 29717537 -90027361 + L1MA2 LINE L1 5950 6076 -228 2059 138 0 20 chr13 29717537 29717842 -90027056 + AluJb SINE Alu 5 303 -9 2105 83 36 53 chr13 29717842 29718077 -90026821 + L1MA2 LINE L1 6076 6304 0 1060 211 26 8 chr13 29718160 29718426 -90026472 - LTR37B LTR ERV1 0 468 198 198 0 0 0 chr13 29718445 29718467 -90026431 + (A)n Simple_repeat Simple_repeat 1 22 0 864 215 16 0 chr13 29718489 29718675 -90026223 - LTR37B LTR ERV1 -271 197 9 217 328 16 0 chr13 29718698 29718759 -90026139 + L2 LINE L2 3008 3069 -203 2058 144 31 89 chr13 29718821 29719306 -90025592 - MER31B LTR ERV1 -9 457 1 2314 92 3 0 chr13 29719321 29719613 -90025285 - AluSp SINE Alu -20 293 1 399 273 43 43 chr13 29719652 29719791 -90025107 + L2 LINE L2 3133 3271 -1 369 280 170 10 chr13 29720432 29720632 -90024266 + L2 LINE L2 2053 2284 -1030 792 219 38 162 chr13 29720731 29721206 -90023692 + MLT1E LTR MaLR 177 592 -1 266 279 116 0 chr13 29721206 29721292 -90023606 + L2 LINE L2 2282 2377 -937 295 256 93 32 chr13 29721953 29722142 -90022756 - MIR SINE MIR -28 234 40 194 312 108 11 chr13 29723653 29723746 -90021152 - L2 LINE L2 -35 3237 3136 424 261 0 0 chr13 29724136 29724228 -90020670 + MIR SINE MIR 64 155 -107 1916 153 29 63 chr13 29724241 29724286 -90020612 - MLT2C1 LTR ERVL 0 397 352 342 0 0 0 chr13 29724286 29724324 -90020574 + (TG)n Simple_repeat Simple_repeat 2 39 0 1916 153 29 63 chr13 29724324 29724381 -90020517 - MLT2C1 LTR ERVL -45 352 295 1976 107 92 0 chr13 29724381 29724662 -90020236 + AluSq SINE Alu 1 307 -6 1916 153 29 63 chr13 29724662 29724969 -90019929 - MLT2C1 LTR ERVL -102 295 1 748 195 31 0 chr13 29725103 29725231 -90019667 + FLAM_A SINE Alu 1 132 -1 561 216 194 57 chr13 29726068 29726295 -90018603 + MIR SINE MIR 5 262 0 748 120 0 0 chr13 29726392 29726509 -90018389 - L1M3 LINE L1 -726 5442 5326 * 979 138 6 12 chr13 29726497 29726664 -90018234 + L1MB1 LINE L1 5901 6066 -102 255 231 33 11 chr13 29727042 29727133 -90017765 + (CCG)n Simple_repeat Simple_repeat 3 95 0 25 31 0 0 chr13 29727700 29727732 -90017166 + AT_rich Low_complexity Low_complexity 1 32 0 194 276 35 35 chr13 29728051 29728109 -90016789 - L2 LINE L2 -19 3294 3237 315 301 93 98 chr13 29729509 29729897 -90015001 - L2 LINE L2 -1 3271 2886 2144 133 0 0 chr13 29730560 29730853 -90014045 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr13 29730853 29730875 -90014023 + (TA)n Simple_repeat Simple_repeat 2 23 0 290 224 47 129 chr13 29732135 29732188 -90012710 - MIR SINE MIR -6 256 200 2532 4 0 0 chr13 29732188 29732455 -90012443 - AluYa5 SINE Alu -6 305 39 290 224 47 129 chr13 29732455 29732571 -90012327 - MIR SINE MIR -62 200 101 242 312 172 45 chr13 29732857 29733014 -90011884 - MIR SINE MIR 0 262 86 2964 203 77 16 chr13 29733020 29733769 -90011129 + Charlie1a DNA MER1_type 29 823 -632 1646 138 91 13 chr13 29733767 29734150 -90010748 + Charlie1a DNA MER1_type 1041 1453 -2 * 338 242 53 0 chr13 29734364 29734483 -90010415 - MLT1I LTR MaLR -9 441 313 237 135 0 0 chr13 29734608 29734645 -90010253 - MLT1I LTR MaLR -253 156 120 3971 86 40 100 chr13 29734697 29735370 -90009528 - MER51A LTR ERV1 -1 633 1 208 257 86 43 chr13 29735445 29735515 -90009383 - L2 LINE L2 -44 3228 3156 281 376 138 18 chr13 29736657 29737207 -90007691 - L2 LINE L2 -477 2837 2222 2652 220 57 52 chr13 29737362 29737774 -90007124 - MER21B LTR ERV1 -124 739 320 2032 141 0 16 chr13 29737774 29738080 -90006818 - AluSq SINE Alu -6 307 7 2652 220 57 52 chr13 29738080 29738402 -90006496 - MER21B LTR ERV1 -543 320 1 593 257 123 11 chr13 29738515 29738702 -90006196 + LTR67 LTR ERVL 4 211 -346 378 206 91 101 chr13 29738768 29738987 -90005911 + LTR67 LTR ERVL 329 545 -12 2430 85 0 19 chr13 29739648 29739964 -90004934 - AluSg SINE Alu 0 310 1 2047 116 29 0 chr13 29740552 29740859 -90004039 - AluSx SINE Alu 0 315 1 527 304 19 5 chr13 29742432 29742690 -90002208 - MLT1I LTR MaLR -27 382 85 527 294 165 3 chr13 29742876 29743192 -90001706 - MLT1I LTR MaLR -14 395 29 1455 165 11 26 chr13 29743221 29743494 -90001404 - AluJb SINE Alu -24 288 20 4052 110 111 105 chr13 29743495 29744870 -90000028 + pTR5 LTR ERV1 66 2438 0 243 88 0 0 chr13 29744870 29744904 -89999994 - AluJb SINE Alu -99 34 1 431 232 50 0 chr13 29745421 29745520 -89999378 - ORSL DNA AcHobo 0 275 172 2226 117 3 0 chr13 29745520 29745819 -89999079 + AluSp SINE Alu 1 300 -13 1854 116 9 104 chr13 29745835 29746029 -89998869 - AluSx SINE Alu -6 296 144 2331 90 0 0 chr13 29746029 29746317 -89998581 - AluSx SINE Alu -24 288 1 1854 116 9 104 chr13 29746317 29746449 -89998449 - AluSx SINE Alu -158 144 1 241 294 0 15 chr13 29746944 29747012 -89997886 - ORSL DNA AcHobo 0 275 209 2491 75 10 0 chr13 29747044 29747349 -89997549 + AluY SINE Alu 1 308 -3 762 263 134 15 chr13 29747360 29747695 -89997203 - MER57B LTR ERV1 -4 430 56 854 179 73 51 chr13 29748257 29748354 -89996544 + MER33 DNA MER1_type 41 134 -2451 1849 126 14 18 chr13 29748354 29748632 -89996266 + AluSx SINE Alu 1 277 -35 342 0 0 0 chr13 29748638 29748676 -89996222 + (TA)n Simple_repeat Simple_repeat 1 38 0 854 179 73 51 chr13 29748676 29748845 -89996053 + MER33 DNA MER1_type 138 320 -4 849 104 0 0 chr13 29748901 29749026 -89995872 - LTR12 LTR ERV1 0 714 590 4536 111 49 35 chr13 29749026 29749703 -89995195 - LTR12 LTR ERV1 -2 686 1 786 292 92 49 chr13 29749703 29750166 -89994732 + L2 LINE L2 2719 3202 -111 2136 153 110 5 chr13 29750166 29750557 -89994341 - MSTB1 LTR MaLR 0 432 1 786 292 92 49 chr13 29750557 29750674 -89994224 + L2 LINE L2 3202 3313 0 2306 82 0 26 chr13 29751644 29751950 -89992948 - AluY SINE Alu -13 298 1 484 273 76 29 chr13 29752188 29752360 -89992538 + MIR SINE MIR 60 239 -23 687 244 78 116 chr13 29752551 29752570 -89992328 + MLT1K LTR MaLR 308 326 -262 2234 105 10 0 chr13 29752570 29752864 -89992034 - AluSx SINE Alu -15 297 1 687 244 78 116 chr13 29752864 29753164 -89991734 + MLT1K LTR MaLR 326 588 0 233 184 0 0 chr13 29753621 29753659 -89991239 + L1 LINE L1 4113 4150 -1996 377 297 36 10 chr13 29754483 29754626 -89990272 - MIR SINE MIR -65 143 2 270 268 118 77 chr13 29755318 29755426 -89989472 - MIR SINE MIR 0 262 160 2507 63 3 0 chr13 29755426 29755728 -89989170 - AluSq SINE Alu -10 303 1 270 268 118 77 chr13 29755728 29755839 -89989059 - MIR SINE MIR -102 160 34 251 281 73 0 chr13 29755946 29756028 -89988870 + L2 LINE L2 3160 3247 -25 2223 160 104 18 chr13 29756239 29756730 -89988168 - MER51A LTR ERV1 0 634 90 2127 111 37 3 chr13 29757225 29757559 -89987339 + AluSc SINE Alu 1 344 0 182 180 40 0 chr13 29757638 29757688 -89987210 + GA-rich Low_complexity Low_complexity 2 53 0 2415 94 0 0 chr13 29758001 29758300 -89986598 - AluSc SINE Alu -5 304 6 2199 116 0 3 chr13 29760196 29760497 -89984401 + AluSg SINE Alu 1 300 -10 689 165 36 173 chr13 29760829 29761077 -89983821 + MER20 DNA MER1_type 6 219 0 242 273 211 25 chr13 29761115 29761219 -89983679 - L2 LINE L2 0 3313 3230 288 0 0 0 chr13 29761219 29761251 -89983647 + (CA)n Simple_repeat Simple_repeat 2 33 0 242 273 211 25 chr13 29761251 29761388 -89983510 - L2 LINE L2 -83 3230 3027 333 240 48 40 chr13 29761389 29761514 -89983384 - MLT1L LTR MaLR -14 601 476 423 272 23 46 chr13 29761721 29761894 -89983004 - MLT1K LTR MaLR -340 248 80 206 219 76 129 chr13 29761903 29762113 -89982785 - L2 LINE L2 -253 3060 2862 28 48 0 0 chr13 29762974 29763016 -89981882 + AT_rich Low_complexity Low_complexity 1 42 0 558 234 0 0 chr13 29763041 29763148 -89981750 - FLAM_A SINE Alu -35 107 1 990 175 0 0 chr13 29763157 29763317 -89981581 - FRAM SINE Alu -16 160 1 291 231 130 28 chr13 29763533 29763641 -89981257 - MIR SINE MIR -60 202 84 348 278 0 37 chr13 29763715 29763823 -89981075 - MIR SINE MIR -140 122 19 317 203 139 0 chr13 29764134 29764213 -89980685 - MIR SINE MIR -83 179 90 2404 89 7 0 chr13 29768901 29769204 -89975694 - AluSg SINE Alu -5 305 1 675 228 100 58 chr13 29769418 29769729 -89975169 + MER33 DNA MER1_type 1 324 0 1107 153 0 0 chr13 29770896 29771059 -89973839 - AluSp SINE Alu -16 297 135 2568 47 0 0 chr13 29771070 29771366 -89973532 - AluY SINE Alu -15 296 1 229 247 45 0 chr13 29772505 29772594 -89972304 + CT-rich Low_complexity Low_complexity 1 93 0 737 177 9 0 chr13 29776891 29777004 -89967894 + FRAM SINE Alu 6 119 -57 189 0 0 0 chr13 29778151 29778172 -89966726 + (A)n Simple_repeat Simple_repeat 1 21 0 314 222 244 22 chr13 29780678 29780768 -89964130 - MIR SINE MIR -141 121 12 1635 132 24 68 chr13 29781287 29781582 -89963316 - AluJo SINE Alu -30 282 1 215 198 221 58 chr13 29783580 29783666 -89961232 + MIR SINE MIR 32 131 -77 315 71 0 0 chr13 29784080 29784122 -89960776 + (TG)n Simple_repeat Simple_repeat 1 42 0 26 64 0 0 chr13 29786962 29787009 -89957889 + AT_rich Low_complexity Low_complexity 1 47 0 495 283 111 25 chr13 29787699 29787897 -89957001 - L2 LINE L2 0 3313 3099 406 274 149 6 chr13 29788024 29788192 -89956706 + MIR SINE MIR 40 231 -31 291 273 129 22 chr13 29789412 29789551 -89955347 - L1ME4a LINE L1 0 6121 5968 285 184 75 20 chr13 29789678 29789772 -89955126 - L1ME4a LINE L1 -323 5798 5695 267 252 15 7 chr13 29790391 29790477 -89954421 + A-rich Low_complexity Low_complexity 1 86 0 22 80 0 0 chr13 29790551 29790601 -89954297 + GC_rich Low_complexity Low_complexity 1 50 0 24 96 0 0 chr13 29790833 29790906 -89953992 + GC_rich Low_complexity Low_complexity 1 73 0 220 282 141 28 chr13 29792612 29792754 -89952144 + MIR3 SINE MIR 37 194 -14 543 246 20 80 chr13 29793039 29793238 -89951660 + MLT1J LTR MaLR 241 427 -84 267 279 130 72 chr13 29794242 29794482 -89950416 - L2 LINE L2 -2 3311 3086 918 171 42 65 chr13 29794482 29794699 -89950199 + MER20 DNA MER1_type 4 215 -4 267 279 130 72 chr13 29794699 29795233 -89949665 - L2 LINE L2 -227 3086 2380 320 212 20 10 chr13 29795233 29795332 -89949566 - L1MB3 LINE L1 -3 6180 6081 267 279 130 72 chr13 29795332 29795516 -89949382 - L2 LINE L2 -933 2380 2208 641 197 0 95 chr13 29795532 29795563 -89949335 - FLAM_A SINE Alu -169 133 101 2127 131 0 7 chr13 29795563 29795861 -89949037 + AluSx SINE Alu 1 296 -16 641 197 0 95 chr13 29795861 29795976 -89948922 - FLAM_A SINE Alu -201 101 1 204 40 0 0 chr13 29796141 29796166 -89948732 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 421 229 39 120 chr13 29796495 29796663 -89948235 - MER5A DNA MER1_type 0 189 1 2016 81 57 50 chr13 29796749 29797046 -89947852 + AluSg SINE Alu 3 301 -9 414 242 288 0 chr13 29798209 29798362 -89946536 - MIR SINE MIR -26 236 40 1451 165 66 53 chr13 29801028 29801331 -89943567 - AluJo SINE Alu -5 307 1 2155 114 7 7 chr13 29801401 29801699 -89943199 + AluSx SINE Alu 1 298 -14 1464 182 40 47 chr13 29802398 29802556 -89942342 - AluJo SINE Alu -16 296 139 2396 95 0 0 chr13 29802556 29802861 -89942037 - AluSg SINE Alu -5 305 1 1464 182 40 47 chr13 29802861 29802998 -89941900 - AluJo SINE Alu -173 139 3 294 143 0 0 chr13 29803307 29803356 -89941542 + (TG)n Simple_repeat Simple_repeat 2 50 0 278 241 60 24 chr13 29803506 29803589 -89941309 - L2 LINE L2 0 3272 3187 1806 168 10 0 chr13 29803601 29803893 -89941005 + AluJb SINE Alu 6 300 -12 475 250 64 29 chr13 29804040 29804212 -89940686 - L2 LINE L2 -94 3219 3042 2331 100 0 0 chr13 29805798 29806098 -89938800 - AluSx SINE Alu -12 300 1 288 303 57 0 chr13 29806640 29806762 -89938136 - MIR SINE MIR -50 212 84 333 111 0 0 chr13 29806767 29806821 -89938077 - L1PA15 LINE L1 0 6165 6112 7577 171 39 10 chr13 29806827 29808572 -89936326 - L1PA15 LINE L1 -2 6163 4354 2197 117 13 0 chr13 29808572 29808870 -89936028 - AluSq SINE Alu -11 302 1 7577 171 39 10 chr13 29808870 29809358 -89935540 - L1PA15 LINE L1 -1811 4354 3882 1929 183 14 3 chr13 29809358 29809713 -89935185 + L1PA15 LINE L1 3513 3871 -2275 624 224 141 5 chr13 29809915 29810107 -89934791 + MIR SINE MIR 9 226 -36 348 244 84 25 chr13 29810300 29810419 -89934479 - MIR SINE MIR -8 254 129 546 312 10 25 chr13 29811332 29811531 -89933367 + MIR3 SINE MIR 10 205 -3 2237 110 3 0 chr13 29812373 29812674 -89932224 - AluSg SINE Alu -8 302 1 185 239 22 76 chr13 29812926 29813018 -89931880 - MIR3 SINE MIR -37 171 85 333 290 113 21 chr13 29814649 29814835 -89930063 + L3 LINE CR1 768 970 -607 201 94 0 0 chr13 29815015 29815047 -89929851 + (TG)n Simple_repeat Simple_repeat 1 32 0 219 208 0 62 chr13 29815188 29815236 -89929662 + L2 LINE L2 3210 3254 -18 329 278 158 64 chr13 29816403 29816637 -89928261 + L2 LINE L2 3017 3272 0 880 183 0 0 chr13 29816901 29817032 -89927866 - FLAM_A SINE Alu -2 131 1 538 253 156 18 chr13 29817296 29817627 -89927271 - L1ME3A LINE L1 -165 5956 5588 202 185 0 37 chr13 29818037 29818091 -89926807 + A-rich Low_complexity Low_complexity 5 56 0 2023 137 34 94 chr13 29818675 29819090 -89925808 - MLT1B LTR MaLR 0 390 1 2190 114 0 10 chr13 29819763 29820069 -89924829 + AluSx SINE Alu 1 303 -9 33 0 0 0 chr13 29820129 29820162 -89924736 + AT_rich Low_complexity Low_complexity 1 33 0 198 97 0 0 chr13 29821015 29821027 -89923871 + (T)n Simple_repeat Simple_repeat 1 12 -19 2347 102 0 0 chr13 29821027 29821320 -89923578 + AluSc SINE Alu 1 293 -16 198 97 0 0 chr13 29821320 29821338 -89923560 + (T)n Simple_repeat Simple_repeat 11 31 0 2550 139 65 7 chr13 29822522 29822925 -89921973 - MSTA LTR MaLR -2 426 1 461 307 64 23 chr13 29823890 29824108 -89920790 - MLT1J LTR MaLR -282 229 3 2484 77 0 10 chr13 29824306 29824618 -89920280 - AluY SINE Alu -2 309 1 242 268 111 63 chr13 29825471 29825661 -89919237 - L2 LINE L2 -904 2410 2212 1319 194 88 25 chr13 29825975 29826294 -89918604 - L1MB2 LINE L1 -1 6170 5832 2119 112 3 0 chr13 29827143 29827437 -89917461 + AluSx SINE Alu 1 295 -17 2174 114 0 3 chr13 29827652 29827949 -89916949 - AluSq SINE Alu -13 300 5 815 149 0 0 chr13 29828974 29829088 -89915810 + FLAM_A SINE Alu 16 129 -13 195 42 0 0 chr13 29830766 29830790 -89914108 + (T)n Simple_repeat Simple_repeat 1 24 0 225 175 0 0 chr13 29831156 29831196 -89913702 - L2 LINE L2 -3 3310 3271 197 337 74 32 chr13 29831939 29832034 -89912864 - L2 LINE L2 -191 3081 2983 384 246 120 7 chr13 29832269 29832411 -89912487 - MIR SINE MIR -1 261 104 600 269 41 0 chr13 29832578 29832749 -89912149 + L2 LINE L2 3120 3297 -16 378 325 179 5 chr13 29832766 29832978 -89911920 - MIR SINE MIR -10 252 4 2368 96 0 0 chr13 29834509 29834810 -89910088 + AluSq SINE Alu 1 301 -12 225 154 0 0 chr13 29835036 29835075 -89909823 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 351 136 0 0 chr13 29837216 29837275 -89907623 + (T)n Simple_repeat Simple_repeat 1 59 0 1957 121 21 0 chr13 29837583 29837872 -89907026 - AluSc SINE Alu -14 295 1 407 342 70 56 chr13 29838623 29838980 -89905918 - L2 LINE L2 -15 3257 2896 317 256 111 22 chr13 29839043 29839133 -89905765 + L2 LINE L2 3169 3266 -6 22 80 0 0 chr13 29840306 29840356 -89904542 + AT_rich Low_complexity Low_complexity 1 50 0 1884 154 0 3 chr13 29840466 29840774 -89904124 - AluSx SINE Alu 0 307 1 32408 93 20 31 chr13 29840826 29843608 -89901290 + L1PA7 LINE L1 438 3249 -2905 2387 80 3 19 chr13 29843608 29843920 -89900978 + AluY SINE Alu 1 307 -4 32408 93 20 31 chr13 29843920 29845068 -89899830 + L1PA7 LINE L1 3249 4408 -1746 2000 107 48 7 chr13 29845068 29845358 -89899540 + AluSg SINE Alu 1 302 -8 32408 93 20 31 chr13 29845358 29847222 -89897676 + L1PA7 LINE L1 4408 6153 -1 1007 286 48 13 chr13 29848139 29848454 -89896444 - L2 LINE L2 -3 3310 2985 279 295 74 25 chr13 29848457 29848579 -89896319 + L2 LINE L2 2278 2405 -909 394 331 109 26 chr13 29848881 29849192 -89895706 + L2 LINE L2 2315 2651 -663 561 299 67 55 chr13 29849193 29849775 -89895123 - L1MEc LINE L1 -4772 2350 1762 226 298 35 0 chr13 29849836 29849950 -89894948 - L1MEc LINE L1 -4961 1462 1345 272 329 15 22 chr13 29850475 29850498 -89894400 - L1MEc LINE L1 -5933 998 976 381 29 0 116 chr13 29850498 29850567 -89894331 - L1PA6 LINE L1 0 6154 6094 272 329 15 22 chr13 29850567 29850680 -89894218 - L1MEc LINE L1 -5955 976 863 231 284 60 0 chr13 29850786 29850853 -89894045 + L2 LINE L2 2870 2940 -332 203 265 0 0 chr13 29851166 29851215 -89893683 + L2 LINE L2 3265 3313 0 249 305 72 34 chr13 29851893 29852012 -89892886 + MIR SINE MIR 35 157 -51 254 298 0 122 chr13 29852560 29852691 -89892207 + LTR67 LTR ERVL 62 176 -381 320 315 30 30 chr13 29852845 29853010 -89891888 + LTR67 LTR ERVL 387 551 -6 2008 158 58 11 chr13 29854564 29854911 -89889987 - MLT1A1 LTR MaLR -2 363 1 362 327 142 5 chr13 29855491 29855702 -89889196 - MLT1L LTR MaLR 0 615 376 2156 58 6 95 chr13 29856674 29856999 -89887899 - AluY SINE Alu -15 296 1 2279 106 0 0 chr13 29857438 29857731 -89887167 - AluSx SINE Alu -8 304 12 1302 192 60 36 chr13 29858515 29858817 -89886081 - AluJo SINE Alu -3 309 1 1941 179 20 11 chr13 29860297 29860648 -89884250 + MLT1A1 LTR MaLR 11 364 -1 2043 152 53 52 chr13 29861247 29861697 -89883201 - MER61C LTR ERV1 0 434 1 560 281 30 10 chr13 29861715 29861918 -89882980 - L1ME3A LINE L1 -310 5860 5654 272 197 14 42 chr13 29861923 29861994 -89882904 + MER112 DNA MER1_type 1 69 -191 250 242 189 0 chr13 29862009 29862104 -89882794 - L1MDa LINE L1 -3312 3228 3116 494 286 115 24 chr13 29862273 29862612 -89882286 - L1MDa LINE L1 -3646 2894 2525 2238 109 0 10 chr13 29862651 29862962 -89881936 - AluSg1 SINE Alu -1 308 1 312 238 126 22 chr13 29863285 29863508 -89881390 - L1MDa LINE L1 -4441 2099 1854 2330 102 0 16 chr13 29863525 29863840 -89881058 - AluSg SINE Alu 0 310 1 443 276 107 52 chr13 29863889 29864310 -89880588 - L1MDa LINE L1 -5235 1295 852 252 236 0 56 chr13 29864777 29864849 -89880049 - MER116 DNA Mariner -11 69 2 3000 127 7 0 chr13 29865160 29865601 -89879297 - L1PA16 LINE L1 -20 6146 5703 451 287 84 7 chr13 29865677 29865820 -89879078 - MIR SINE MIR -84 178 25 231 36 0 0 chr13 29866231 29866259 -89878639 + (CA)n Simple_repeat Simple_repeat 2 29 0 188 156 0 0 chr13 29866796 29866828 -89878070 - MIR SINE MIR -5 257 226 22 0 0 0 chr13 29868144 29868166 -89876732 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 29868365 29868398 -89876500 + AT_rich Low_complexity Low_complexity 1 33 0 7416 107 26 16 chr13 29869777 29870833 -89874065 - MER11C LTR ERVK -4 1067 1 2430 55 0 36 chr13 29872804 29873113 -89871785 + AluY SINE Alu 1 298 -13 362 269 93 19 chr13 29873333 29873441 -89871457 - L2 LINE L2 -6 3307 3192 29 28 0 0 chr13 29873969 29874005 -89870893 + AT_rich Low_complexity Low_complexity 1 36 0 1398 136 0 15 chr13 29875713 29875919 -89868979 + L1PB4 LINE L1 5953 6155 -1 234 0 0 0 chr13 29876051 29876077 -89868821 + (A)n Simple_repeat Simple_repeat 1 26 0 282 250 18 134 chr13 29876610 29876722 -89868176 + L2 LINE L2 3174 3272 0 408 326 14 7 chr13 29876861 29876999 -89867899 + MIR3 SINE MIR 46 184 -24 3851 255 84 20 chr13 29877341 29878615 -89866283 + L1MEc LINE L1 45 1399 -4997 6514 218 25 23 chr13 29878674 29880181 -89864717 + L1M2 LINE L1 1067 2575 -4274 484 193 0 0 chr13 29880182 29880270 -89864628 + L1PA15-16 LINE L1 2817 2904 -3945 31937 104 18 57 chr13 29880313 29886713 -89858185 - L1PA7 LINE L1 0 6154 12 180 0 0 0 chr13 29886725 29886745 -89858153 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1287 193 30 37 chr13 29886750 29887050 -89857848 - MLT1A1 LTR MaLR -67 298 1 2637 134 5 30 chr13 29887201 29887640 -89857258 - L1MB2 LINE L1 0 6171 5744 1190 132 103 62 chr13 29887654 29887897 -89857001 - L1MB2 LINE L1 -528 5655 5403 3847 181 86 27 chr13 29887927 29888717 -89856181 - MER21B LTR ERV1 -26 837 1 17363 184 29 19 chr13 29888796 29890806 -89854092 - MER21A-int LTR ERV1 -57 4134 2079 2591 184 67 95 chr13 29890806 29891554 -89853344 - LTR8A LTR ERV1 0 727 1 17363 184 29 19 chr13 29891554 29892759 -89852139 - MER21A-int LTR ERV1 -2112 2079 887 43967 31 21 1 chr13 29892760 29898790 -89846108 + L1HS LINE L1 2 6155 0 5019 184 38 6 chr13 29898815 29899682 -89845216 - MER21A-int LTR ERV1 -3296 895 1 3883 189 65 13 chr13 29899682 29900426 -89844472 - MER21A LTR ERV1 0 931 150 801 216 65 68 chr13 29900429 29901150 -89843748 + MER52A LTR ERV1 1 751 -269 382 261 294 43 chr13 29901161 29901532 -89843366 + MER52A LTR ERV1 1292 1755 0 745 99 21 71 chr13 29901533 29901674 -89843224 - MER21A LTR ERV1 -785 146 13 4530 123 45 0 chr13 29902113 29902794 -89842104 - LTR62 LTR ERVK -4 715 4 10850 99 9 20 chr13 29903719 29905227 -89839671 + THE1A-int LTR MaLR 90 1580 0 2564 109 3 8 chr13 29905227 29905584 -89839314 + THE1A LTR MaLR 1 355 0 8783 111 26 83 chr13 29905585 29906852 -89838046 + THE1A-int LTR MaLR 2 1340 -240 216 0 0 0 chr13 29906852 29906876 -89838022 + (TA)n Simple_repeat Simple_repeat 1 24 0 617 67 0 0 chr13 29906878 29906953 -89837945 - AluSp/q SINE Alu -18 295 221 8783 111 26 83 chr13 29906953 29907134 -89837764 + THE1A-int LTR MaLR 1341 1439 -141 25 0 0 0 chr13 29907849 29907874 -89837024 + AT_rich Low_complexity Low_complexity 1 25 0 204 296 0 0 chr13 29908743 29908797 -89836101 - L2 LINE L2 -4 3309 3256 234 245 0 0 chr13 29909581 29909634 -89835264 - MER117 DNA MER1_type -8 189 137 802 323 135 25 chr13 29909846 29910647 -89834251 + L2 LINE L2 1870 2758 -556 719 182 8 143 chr13 29911826 29912084 -89832814 - MER112 DNA MER1_type -36 224 2 1654 123 25 0 chr13 29912289 29912533 -89832365 - L1PB1 LINE L1 0 6151 5902 354 257 40 46 chr13 29913938 29914113 -89830785 - LTR33A LTR ERVL -18 505 332 233 0 62 0 chr13 29915158 29915190 -89829708 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1504 164 0 9 chr13 29915219 29915451 -89829447 - AluJo SINE Alu -82 230 1 262 266 83 18 chr13 29916499 29916608 -89828290 + L1MB8 LINE L1 6061 6176 -2 2326 98 7 0 chr13 29916720 29917025 -89827873 - AluY SINE Alu -4 307 1 3038 172 13 7 chr13 29917481 29918028 -89826870 - MER44D DNA MER2_type 0 605 1 184 336 0 58 chr13 29918526 29918630 -89826268 + MIR SINE MIR 95 192 -70 2291 108 7 3 chr13 29918856 29919162 -89825736 + AluSx SINE Alu 1 307 -5 2134 205 101 137 chr13 29922683 29924314 -89820584 + L1ME3 LINE L1 3465 5033 -1113 898 192 101 0 chr13 29924314 29924512 -89820386 + MER20 DNA MER1_type 1 218 -1 2134 205 101 137 chr13 29924512 29924589 -89820309 + L1ME3 LINE L1 5033 5111 -1035 718 206 8 0 chr13 29924604 29924730 -89820168 + FLAM_C SINE Alu 7 133 -10 1368 227 134 49 chr13 29924731 29924861 -89820037 + L1ME3 LINE L1 5107 5225 -937 2018 223 94 18 chr13 29924861 29925412 -89819486 + MLT1E LTR MaLR 1 593 0 1368 227 134 49 chr13 29925412 29925746 -89819152 + L1ME3 LINE L1 5225 5529 -633 906 198 127 0 chr13 29925746 29925943 -89818955 + MER58A DNA MER1_type 1 222 -2 1368 227 134 49 chr13 29925943 29926275 -89818623 + L1ME3 LINE L1 5529 5976 -186 7923 122 13 21 chr13 29927076 29928365 -89816533 + L1PA10 LINE L1 4103 5381 -765 1384 96 15 10 chr13 29928365 29928559 -89816339 + L1PA10 LINE L1 5957 6154 -14 1512 121 49 0 chr13 29928991 29929215 -89815683 - LTR12 LTR ERV1 0 714 480 392 194 31 20 chr13 29929216 29929314 -89815584 - LTR30 LTR ERV1 -80 642 544 6851 133 29 87 chr13 29929314 29930678 -89814220 - pTR5 LTR ERV1 -413 2025 741 918 144 19 31 chr13 29930828 29930988 -89813910 + MER61A LTR ERV1 186 343 0 41549 45 37 0 chr13 29931036 29936965 -89807933 + L1PA4 LINE L1 1 6155 0 2477 118 32 52 chr13 29937655 29938061 -89806837 + MER48 LTR ERV1 1 398 0 408 278 198 22 chr13 29938360 29938630 -89806268 - L1MC4 LINE L1 -850 7042 6678 456 267 76 83 chr13 29938671 29938954 -89805944 + L1MC5 LINE L1 7302 7585 -376 2398 93 0 0 chr13 29938954 29939245 -89805653 + AluSc SINE Alu 1 291 -18 456 267 76 83 chr13 29939245 29939519 -89805379 + L1MC5 LINE L1 7585 7857 -104 2254 176 39 10 chr13 29939519 29939934 -89804964 - LTR3 LTR ERVK 0 429 3 456 267 76 83 chr13 29939934 29939990 -89804908 + L1MC5 LINE L1 7857 7912 -49 212 291 200 40 chr13 29940084 29940479 -89804419 + L2 LINE L2 2384 2841 -473 757 249 31 35 chr13 29940732 29940961 -89803937 + MIR SINE MIR 34 261 -1 207 261 206 0 chr13 29941014 29941106 -89803792 - MIR SINE MIR -9 253 143 278 274 0 32 chr13 29941204 29941299 -89803599 - MIR SINE MIR -113 149 58 886 125 0 0 chr13 29941845 29941965 -89802933 + LTR1 LTR ERV1 666 785 0 354 125 0 0 chr13 29943311 29943359 -89801539 + THE1A LTR MaLR 308 355 0 7900 171 163 3 chr13 29943359 29944721 -89800177 + THE1B-int LTR MaLR 1 1580 0 2358 99 48 14 chr13 29944721 29945073 -89799825 + THE1B LTR MaLR 1 364 0 447 268 9 0 chr13 29946653 29946765 -89798133 - MIR SINE MIR -5 257 145 1709 171 42 10 chr13 29946772 29947082 -89797816 + MSTA LTR MaLR 109 428 0 626 356 63 36 chr13 29947082 29947638 -89797260 + PRIMA41-int LTR ERV1 1137 1707 -5415 5015 122 34 1 chr13 29948050 29948811 -89796087 - L1PB3 LINE L1 0 6154 5369 545 283 86 59 chr13 29948815 29949353 -89795545 + PRIMA41-int LTR ERV1 4431 5020 -2921 414 260 42 65 chr13 29949732 29949948 -89794950 + PRIMA41-int LTR ERV1 5356 5570 -2186 3892 102 24 33 chr13 29949982 29950563 -89794335 + PRIMA41-int LTR ERV1 7168 7743 -377 1988 120 14 4 chr13 29950672 29950948 -89793950 + AluSq SINE Alu 1 279 -34 212 0 0 35 chr13 29950953 29950982 -89793916 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 1204 87 0 17 chr13 29951207 29951379 -89793519 + PRIMA41-int LTR ERV1 7768 7936 -184 801 175 12 24 chr13 29951384 29951550 -89793348 + LOR1b LTR ERV1 298 461 0 203 310 58 39 chr13 29952485 29952640 -89792258 + MIR SINE MIR 20 177 -85 975 133 18 24 chr13 29953324 29953490 -89791408 + MER52C LTR ERV1 1 165 -1113 2565 131 187 20 chr13 29953590 29954077 -89790821 + MER52C LTR ERV1 711 1278 0 3327 126 53 11 chr13 29954077 29954624 -89790274 + MER52C-int LTR ERV1 2 571 -6520 5912 156 68 13 chr13 29954734 29956088 -89788810 + MER52C-int LTR ERV1 1698 3204 -3887 1259 120 10 14 chr13 29956095 29956303 -89788595 + MER52-int LTR ERV1 795 1001 -6090 439 291 54 85 chr13 29958137 29958491 -89786407 - L2 LINE L2 -358 2956 2614 1698 169 7 4 chr13 29959774 29960052 -89784846 - AluJo SINE Alu -31 281 3 32 0 0 0 chr13 29960635 29960667 -89784231 + AT_rich Low_complexity Low_complexity 1 32 0 2584 200 6 12 chr13 29963043 29963562 -89781336 - MER82 DNA MER2_type -136 517 2 649 252 69 3 chr13 29963565 29963768 -89781130 - L2 LINE L2 -2001 1313 1031 198 0 0 0 chr13 29963799 29963821 -89781077 + (TA)n Simple_repeat Simple_repeat 1 22 0 29 0 0 0 chr13 29963861 29963890 -89781008 + AT_rich Low_complexity Low_complexity 1 29 0 483 148 13 1 chr13 29964125 29964214 -89780684 - L1P1 LINE L1 -684 5471 5383 1024 188 56 28 chr13 29965271 29965484 -89779414 + AluJo SINE Alu 1 219 -93 2028 133 0 35 chr13 29965537 29965852 -89779046 - AluJb SINE Alu -8 304 1 430 204 19 56 chr13 29965955 29966063 -89778835 + MIR SINE MIR 9 112 -150 1317 104 9 5 chr13 29966130 29966341 -89778557 - LTR1 LTR ERV1 -573 212 1 1685 139 28 0 chr13 29966591 29966878 -89778020 + L1MA5A LINE L1 6000 6294 -3 4622 192 35 42 chr13 29967133 29967701 -89777197 - L1M4 LINE L1 -1091 5055 4485 1558 99 41 0 chr13 29967701 29967922 -89776976 - MER30 DNA MER1_type 0 230 1 4622 192 35 42 chr13 29967922 29968689 -89776209 - L1M4 LINE L1 -1661 4485 3729 262 282 0 0 chr13 29968685 29968770 -89776128 - L1M4 LINE L1 -3558 2588 2504 * 2328 92 3 0 chr13 29968771 29969066 -89775832 - AluSp SINE Alu -17 296 1 3563 102 25 7 chr13 29969217 29969765 -89775133 - LTR9B LTR ERV1 -86 558 1 4226 141 7 44 chr13 29969766 29970168 -89774730 - HUERS-P3b LTR ERV1 -7 7411 6995 2429 90 0 0 chr13 29970168 29970479 -89774419 - AluY SINE Alu 0 311 1 4226 141 7 44 chr13 29970479 29970491 -89774407 - HUERS-P3b LTR ERV1 -423 6995 6984 2332 68 0 29 chr13 29970491 29970798 -89774100 - AluY SINE Alu -12 299 2 4226 141 7 44 chr13 29970798 29971129 -89773769 - HUERS-P3b LTR ERV1 -434 6984 6693 9513 107 49 13 chr13 29971277 29973007 -89771891 - HUERS-P3b LTR ERV1 -426 4589 3101 305 256 43 37 chr13 29973011 29973175 -89771723 - L1M4 LINE L1 -3700 2446 2282 612 192 107 34 chr13 29973213 29973390 -89771508 + Tigger3(Golem) DNA MER2_type 1 2847 -182 6691 104 4 66 chr13 29973390 29974525 -89770373 - Charlie3 DNA MER1_type -4 2706 1642 2066 87 21 14 chr13 29974526 29974814 -89770084 - AluSx SINE Alu -9 303 14 303 87 0 0 chr13 29974828 29974874 -89770024 + MADE1 DNA Mariner 31 76 -4 692 258 50 0 chr13 29976093 29976275 -89768623 + MIR SINE MIR 13 203 -59 1631 165 77 9 chr13 29976294 29976634 -89768264 + MLT2C1 LTR ERVL 35 397 0 292 148 19 0 chr13 29977228 29977282 -89767616 - MER116 DNA Mariner -25 55 1 567 261 48 18 chr13 29977909 29978074 -89766824 + MIR SINE MIR 12 181 -81 369 345 35 30 chr13 29978413 29978613 -89766285 + L2 LINE L2 2552 2752 -562 7116 203 19 33 chr13 29978802 29980684 -89764214 + L1 LINE L1 2367 4222 -1924 710 150 0 0 chr13 29980784 29980904 -89763994 + AluSp/q SINE Alu 194 313 0 1039 193 0 0 chr13 29981030 29981196 -89763702 - AluJb SINE Alu -13 299 134 2060 84 66 0 chr13 29981196 29981469 -89763429 - AluSg SINE Alu -19 291 1 1431 171 56 45 chr13 29983104 29983461 -89761437 - MER47A DNA MER2_type -5 361 1 198 127 18 36 chr13 29984420 29984475 -89760423 + GA-rich Low_complexity Low_complexity 1 54 0 2246 105 0 0 chr13 29984477 29984773 -89760125 - AluSx SINE Alu -16 296 1 295 200 67 40 chr13 29985212 29985287 -89759611 - L2 LINE L2 -33 3280 3204 227 308 90 41 chr13 29985541 29985807 -89759091 + L2 LINE L2 2326 2604 -710 341 302 103 51 chr13 29985988 29986339 -89758559 + L2 LINE L2 2934 3302 -11 2022 116 3 0 chr13 29987629 29987935 -89756963 - AluSx SINE Alu 0 307 1 187 329 41 0 chr13 29988356 29988429 -89756469 + MIR3 SINE MIR 127 202 -6 258 56 0 0 chr13 29988537 29988573 -89756325 + (TA)n Simple_repeat Simple_repeat 1 36 0 276 265 0 0 chr13 29988581 29988664 -89756234 - L1MC4 LINE L1 -1346 6696 6614 203 182 0 0 chr13 29988715 29988748 -89756150 + (TATG)n Simple_repeat Simple_repeat 4 36 0 396 333 25 25 chr13 29989226 29989388 -89755510 - L2 LINE L2 -201 3071 2910 2494 109 43 0 chr13 29991587 29991934 -89752964 + THE1B LTR MaLR 3 364 0 5806 215 37 14 chr13 29992339 29994046 -89750852 - L1 LINE L1 -2395 5170 3420 212 319 69 0 chr13 29994055 29994127 -89750771 + L2 LINE L2 3188 3264 -8 560 127 55 109 chr13 29994506 29994671 -89750227 + LTR37A LTR ERV1 3 158 -268 5543 111 82 19 chr13 29994671 29994733 -89750165 + MER51B-int LTR ERV1 2122 2179 -5637 2261 119 3 6 chr13 29994733 29995045 -89749853 + AluSx SINE Alu 1 311 -1 5543 111 82 19 chr13 29995045 29996059 -89748839 + MER51B-int LTR ERV1 2179 3265 -4551 1914 172 63 35 chr13 29996071 29996559 -89748339 + MER51B-int LTR ERV1 1476 1977 -3240 1019 82 114 2 chr13 29996538 29996808 -89748090 + MER51B-int LTR ERV1 2210 4907 -1691 * 33 0 0 0 chr13 29996822 29996855 -89748043 + AT_rich Low_complexity Low_complexity 1 33 0 9250 134 35 16 chr13 29996876 29997116 -89747782 + MER51B-int LTR ERV1 5617 5851 -1965 1875 116 11 14 chr13 29997116 29997401 -89747497 - AluSx SINE Alu 0 312 29 9250 134 35 16 chr13 29997401 29998725 -89746173 + MER51B-int LTR ERV1 5851 7421 -395 216 0 0 0 chr13 29998725 29998749 -89746149 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 9250 134 35 16 chr13 29998749 29999152 -89745746 + MER51B-int LTR ERV1 7421 7815 -1 2152 99 129 0 chr13 29999155 29999488 -89745410 + MER51B LTR ERV1 2 377 0 461 317 36 20 chr13 29999488 29999823 -89745075 - L1 LINE L1 -5600 1886 1405 461 189 252 0 chr13 30000822 30000949 -89743949 + MER5A DNA MER1_type 26 184 -5 435 257 146 10 chr13 30002135 30002341 -89742557 + MIR SINE MIR 11 244 -18 259 241 66 72 chr13 30002390 30002556 -89742342 - LTR16A1 LTR ERVL 0 457 293 2301 79 3 25 chr13 30003296 30003612 -89741286 - AluSc SINE Alu 0 309 1 24 32 0 0 chr13 30004133 30004164 -89740734 + AT_rich Low_complexity Low_complexity 1 31 0 486 211 23 8 chr13 30004240 30004373 -89740525 - L1ME LINE L1 -382 5780 5646 295 272 37 69 chr13 30004486 30004732 -89740166 - L1M4 LINE L1 -3569 2577 2340 575 284 47 87 chr13 30006324 30006645 -89738253 - L2 LINE L2 0 3313 3006 2315 236 32 0 chr13 30006663 30007256 -89737642 + L1MB8 LINE L1 5379 5990 -188 2011 125 0 29 chr13 30008158 30008470 -89736428 - AluSx SINE Alu -9 303 1 2370 86 3 16 chr13 30008483 30008796 -89736102 - AluSg SINE Alu -1 309 1 400 264 42 77 chr13 30009616 30009912 -89734986 - L1ME LINE L1 -713 5453 5159 288 248 68 26 chr13 30009912 30010029 -89734869 - L1MD2 LINE L1 -30 6329 6208 1655 124 8 4 chr13 30010031 30010273 -89734625 + AluSx SINE Alu 1 243 -69 737 52 0 41 chr13 30010273 30010406 -89734492 + AluSp/q SINE Alu 190 318 0 310 236 0 0 chr13 30010432 30010504 -89734394 - L1MD3 LINE L1 -140 7855 7784 21 0 0 0 chr13 30011135 30011156 -89733742 + AT_rich Low_complexity Low_complexity 1 21 0 704 137 217 6 chr13 30011434 30011595 -89733303 + L1PA16 LINE L1 5963 6157 -9 1988 146 9 22 chr13 30012832 30013147 -89731751 + AluJb SINE Alu 1 311 -1 230 154 0 0 chr13 30013272 30013335 -89731563 + AluSx SINE Alu 246 308 0 24 91 0 0 chr13 30013764 30013830 -89731068 + AT_rich Low_complexity Low_complexity 1 66 0 1664 179 35 6 chr13 30014751 30015091 -89729807 + L1MD2 LINE L1 5647 5996 -363 625 143 86 29 chr13 30015093 30015302 -89729596 + Charlie2 DNA MER1_type 2271 2491 -371 8901 97 79 1 chr13 30015741 30017167 -89727731 - Charlie3 DNA MER1_type -1073 1637 3 1226 148 15 0 chr13 30017168 30017364 -89727534 + Tigger3(Golem) DNA MER2_type 2831 3029 0 234 0 0 0 chr13 30017367 30017393 -89727505 + (CA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr13 30017600 30017621 -89727277 + (TA)n Simple_repeat Simple_repeat 1 21 0 7378 43 0 0 chr13 30017621 30019277 -89725621 - L1PA5 LINE L1 -7 6147 4490 238 188 139 20 chr13 30019277 30019378 -89725520 - L1MEc LINE L1 -4670 1726 1614 22 35 0 0 chr13 30019393 30019422 -89725476 + AT_rich Low_complexity Low_complexity 1 29 0 363 252 77 32 chr13 30019430 30019455 -89725443 - MIR SINE MIR -13 249 227 2322 168 31 17 chr13 30019455 30019877 -89725021 + MSTA LTR MaLR 1 428 0 363 252 77 32 chr13 30019877 30020006 -89724892 - MIR SINE MIR -35 227 88 844 233 47 0 chr13 30020737 30020909 -89723989 - MER5A DNA MER1_type -9 180 1 682 300 76 5 chr13 30022347 30022570 -89722328 + MIR SINE MIR 24 262 0 592 244 62 43 chr13 30022920 30023178 -89721720 + L1MDa LINE L1 1396 1658 -4882 471 291 12 6 chr13 30023251 30023416 -89721482 + L1ME2 LINE L1 5998 6163 -1 2256 116 0 3 chr13 30023825 30024136 -89720762 + AluSg SINE Alu 1 310 0 287 173 111 0 chr13 30025782 30025863 -89719035 - L1MB2 LINE L1 0 6171 6082 955 186 63 94 chr13 30027999 30028414 -89716484 + L1MC4 LINE L1 7498 7899 -143 445 211 9 0 chr13 30028495 30028609 -89716289 + L1MC4 LINE L1 7921 8035 -7 205 200 0 22 chr13 30028627 30028672 -89716226 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 425 274 43 100 chr13 30028753 30029065 -89715833 + L1M4 LINE L1 4990 5287 -859 374 256 45 75 chr13 30029123 30029256 -89715642 + L1M LINE L1 5293 5421 -700 633 272 52 49 chr13 30029484 30029789 -89715109 - LTR16C LTR ERVL 0 491 186 196 238 0 0 chr13 30029978 30030020 -89714878 + L2 LINE L2 3267 3308 -5 306 279 134 96 chr13 30030334 30030906 -89713992 - L2 LINE L2 -640 2674 2072 2307 99 6 6 chr13 30030906 30031218 -89713680 + AluSx SINE Alu 1 312 0 306 279 134 96 chr13 30031218 30031302 -89713596 - L2 LINE L2 -1242 2072 1993 1921 140 10 19 chr13 30031326 30031640 -89713258 + AluJb SINE Alu 1 311 -1 289 274 186 0 chr13 30031727 30031829 -89713069 + L2 LINE L2 3147 3267 -5 25 0 0 0 chr13 30032150 30032175 -89712723 + AT_rich Low_complexity Low_complexity 1 25 0 317 317 48 21 chr13 30033932 30034077 -89710821 - L2 LINE L2 -10 3303 3155 269 244 278 0 chr13 30034762 30034852 -89710046 - MER5A DNA MER1_type -2 187 73 750 184 0 43 chr13 30034863 30035026 -89709872 + L2 LINE L2 3158 3313 0 767 267 142 44 chr13 30035701 30035958 -89708940 - L1M4 LINE L1 -807 5339 5108 4750 148 42 6 chr13 30035958 30036829 -89708069 + MER4D LTR ERV1 1 903 0 767 267 142 44 chr13 30036829 30036889 -89708009 - L1M4 LINE L1 -1038 5108 5055 261 0 0 0 chr13 30036889 30036918 -89707980 + (CA)n Simple_repeat Simple_repeat 2 30 0 767 267 142 44 chr13 30036918 30037482 -89707416 - L1M4 LINE L1 -1091 5055 4371 251 252 185 17 chr13 30037803 30037922 -89706976 - MIR SINE MIR -108 154 16 226 315 14 0 chr13 30037949 30038022 -89706876 - tRNA-Glu-GAG tRNA tRNA 0 75 2 559 297 136 25 chr13 30038160 30038667 -89706231 + L2 LINE L2 2593 3153 -160 837 109 56 11 chr13 30038780 30039047 -89705851 - L1MB3 LINE L1 0 6183 5706 213 259 0 19 chr13 30039068 30039122 -89705776 + L2 LINE L2 3169 3221 -92 629 323 87 39 chr13 30039253 30039885 -89705013 + L2 LINE L2 2589 3242 -30 234 191 0 0 chr13 30040572 30040619 -89704279 + GA-rich Low_complexity Low_complexity 3 49 0 381 288 8 32 chr13 30040956 30041081 -89703817 - MER5A DNA MER1_type -43 146 25 347 256 113 77 chr13 30041085 30041359 -89703539 + L1ME4a LINE L1 5814 6097 -24 1687 186 25 0 chr13 30042173 30042458 -89702440 - AluJo SINE Alu -19 293 2 1738 298 89 66 chr13 30044958 30045215 -89699683 - L2 LINE L2 0 3313 3063 259 71 24 0 chr13 30045215 30045257 -89699641 - MADE1 DNA Mariner -37 43 1 1738 298 89 66 chr13 30045257 30046312 -89698586 - L2 LINE L2 -250 3063 1925 874 151 50 0 chr13 30047483 30047650 -89697248 - FRAM SINE Alu 0 174 1 324 346 46 8 chr13 30047844 30047974 -89696924 - MIR SINE MIR -118 144 10 373 285 56 28 chr13 30048068 30048212 -89696686 + MIR3 SINE MIR 50 197 -11 24 77 0 0 chr13 30048560 30048612 -89696286 + AT_rich Low_complexity Low_complexity 1 52 0 370 286 137 44 chr13 30050275 30050502 -89694396 - MIR SINE MIR -12 250 3 247 297 14 0 chr13 30050554 30050628 -89694270 - MER117 DNA MER1_type -4 193 119 1168 178 50 4 chr13 30052167 30052408 -89692490 + MLT1D LTR MaLR 254 505 0 2270 118 0 0 chr13 30052898 30053204 -89691694 + AluSx SINE Alu 1 306 -6 205 303 90 66 chr13 30053387 30053509 -89691389 + L2 LINE L2 3110 3234 -38 568 233 134 12 chr13 30053580 30053752 -89691146 + MIR SINE MIR 19 211 -51 695 304 32 12 chr13 30053818 30054076 -89690822 + MIR SINE MIR 2 262 0 1867 168 166 9 chr13 30055144 30055579 -89689319 + MLT1D LTR MaLR 1 503 -2 1852 101 0 41 chr13 30055718 30055985 -89688913 + AluSx SINE Alu 1 256 -56 1316 170 19 8 chr13 30056073 30056338 -89688560 + L1MA4 LINE L1 6029 6296 -4 387 308 96 58 chr13 30057359 30057567 -89687331 - MIR SINE MIR -1 261 46 219 269 60 0 chr13 30058596 30058663 -89686235 + L2 LINE L2 3243 3313 0 2257 103 10 0 chr13 30058962 30059253 -89685645 - AluSg SINE Alu -16 294 1 28 0 0 0 chr13 30059790 30059818 -89685080 + AT_rich Low_complexity Low_complexity 1 28 0 2408 82 0 0 chr13 30060503 30060808 -89684090 - AluY SINE Alu -6 305 1 256 294 118 0 chr13 30060993 30061095 -89683803 - MIR SINE MIR -65 143 30 243 0 0 0 chr13 30061852 30061879 -89683019 + (A)n Simple_repeat Simple_repeat 1 27 0 267 203 36 65 chr13 30062473 30062557 -89682341 + MER112 DNA MER1_type 66 146 -114 2133 118 0 14 chr13 30062557 30062853 -89682045 - AluSx SINE Alu -20 292 1 267 203 36 65 chr13 30062853 30062906 -89681992 + MER112 DNA MER1_type 146 199 -61 1800 125 40 68 chr13 30063053 30063333 -89681565 + MER2 DNA MER2_type 2 288 -56 2164 89 0 4 chr13 30063333 30063604 -89681294 + AluY SINE Alu 1 270 -41 180 0 0 0 chr13 30063604 30063624 -89681274 + (TA)n Simple_repeat Simple_repeat 2 21 0 1800 125 40 68 chr13 30063624 30063695 -89681203 + MER2 DNA MER2_type 286 344 0 2074 143 0 0 chr13 30063723 30064009 -89680889 + AluSx SINE Alu 1 286 -26 220 180 33 16 chr13 30065663 30065724 -89679174 + GA-rich Low_complexity Low_complexity 2 63 0 459 305 8 0 chr13 30066532 30066650 -89678248 + MIR SINE MIR 17 135 -127 239 288 72 65 chr13 30067654 30067807 -89677091 - L2 LINE L2 -1 3312 3159 541 292 36 18 chr13 30067813 30067981 -89676917 + MIR SINE MIR 75 245 -17 323 308 117 8 chr13 30068230 30068350 -89676548 + L2 LINE L2 3127 3259 -13 252 0 0 0 chr13 30068350 30068378 -89676520 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 189 278 42 0 chr13 30068697 30068769 -89676129 - L2 LINE L2 -883 2431 2357 964 286 53 26 chr13 30068817 30069383 -89675515 - L1ME4a LINE L1 -1 6120 5540 540 268 69 57 chr13 30069475 30069639 -89675259 - L1ME4a LINE L1 -749 5429 5268 2085 117 26 61 chr13 30069639 30069708 -89675190 - THE1B LTR MaLR 0 364 294 2158 88 17 7 chr13 30069708 30070003 -89674895 - AluSg SINE Alu -10 300 3 2085 117 26 61 chr13 30070003 30070310 -89674588 - THE1B LTR MaLR -70 294 1 540 268 69 57 chr13 30070310 30070605 -89674293 - L1ME4a LINE L1 -910 5268 4957 3877 141 22 6 chr13 30071599 30072271 -89672627 - L1MB3 LINE L1 -2 6181 5499 240 271 34 0 chr13 30072312 30072371 -89672527 - L2 LINE L2 -56 3216 3156 464 246 291 0 chr13 30072677 30072921 -89671977 + MER102a DNA MER1_type 1 315 -15 1029 201 66 3 chr13 30072936 30073042 -89671856 + MER33 DNA MER1_type 8 106 -2479 1793 141 57 37 chr13 30073042 30073340 -89671558 - AluSg SINE Alu -6 304 1 1029 201 66 3 chr13 30073340 30073521 -89671377 + MER33 DNA MER1_type 106 313 -11 25 0 0 0 chr13 30074637 30074662 -89670236 + AT_rich Low_complexity Low_complexity 1 25 0 2279 114 3 0 chr13 30075271 30075568 -89669330 + AluSq SINE Alu 1 298 -15 253 303 138 11 chr13 30076411 30076599 -89668299 + MIR SINE MIR 47 258 -4 252 0 0 0 chr13 30077574 30077602 -89667296 + (CA)n Simple_repeat Simple_repeat 2 29 0 25 31 0 0 chr13 30078995 30079027 -89665871 + AT_rich Low_complexity Low_complexity 1 32 0 183 167 0 0 chr13 30080935 30080977 -89663921 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 2242 145 54 2 chr13 30082290 30082696 -89662202 + MSTB1 LTR MaLR 6 432 0 239 265 265 8 chr13 30083379 30083496 -89661402 + L2 LINE L2 3125 3271 -1 597 225 283 5 chr13 30083513 30083704 -89661194 - MIR SINE MIR 0 262 19 362 254 34 72 chr13 30084390 30084553 -89660345 + MER112 DNA MER1_type 28 183 -77 1984 151 7 0 chr13 30084553 30084851 -89660047 + AluSx SINE Alu 1 300 -12 362 254 34 72 chr13 30084851 30084896 -89660002 + MER112 DNA MER1_type 183 228 -32 609 14 0 0 chr13 30085733 30085803 -89659095 + (TC)n Simple_repeat Simple_repeat 1 70 0 25 31 0 0 chr13 30086640 30086672 -89658226 + AT_rich Low_complexity Low_complexity 1 32 0 333 0 0 0 chr13 30087462 30087499 -89657399 + (CA)n Simple_repeat Simple_repeat 2 38 0 2247 95 0 7 chr13 30088121 30088417 -89656481 + AluSg SINE Alu 16 309 -1 459 242 58 0 chr13 30088517 30088637 -89656261 - MIR SINE MIR -21 241 115 209 284 15 30 chr13 30088628 30088695 -89656203 - L2 LINE L2 -23 3249 3184 * 4831 48 0 3 chr13 30088985 30089606 -89655292 - L1PA6 LINE L1 -122 6032 5414 405 0 0 0 chr13 30090326 30090371 -89654527 + (CA)n Simple_repeat Simple_repeat 2 46 0 201 350 0 0 chr13 30092659 30092719 -89652179 + GA-rich Low_complexity Low_complexity 2 61 0 21 0 0 0 chr13 30093166 30093187 -89651711 + AT_rich Low_complexity Low_complexity 1 21 0 219 218 51 13 chr13 30094009 30094087 -89650811 + (TA)n Simple_repeat Simple_repeat 2 82 0 590 274 50 11 chr13 30096375 30096554 -89648344 + MIR SINE MIR 6 191 -71 2158 113 0 10 chr13 30096749 30097051 -89647847 - AluSx SINE Alu -13 299 1 262 229 16 0 chr13 30098411 30098472 -89646426 - L2 LINE L2 -8 3305 3244 297 0 0 0 chr13 30099794 30099827 -89645071 + (TG)n Simple_repeat Simple_repeat 2 34 0 964 102 15 0 chr13 30099827 30099964 -89644934 - AluY SINE Alu -3 308 170 2479 66 0 3 chr13 30099966 30100269 -89644629 - AluY SINE Alu -9 302 1 181 314 78 0 chr13 30100468 30100519 -89644379 - L2 LINE L2 -8 3264 3210 2220 179 36 21 chr13 30100600 30101130 -89643768 + MER74A LTR ERVL 8 545 -13 418 264 0 85 chr13 30102320 30102521 -89642377 - L2 LINE L2 0 3313 3130 2415 254 35 14 chr13 30102532 30103246 -89641652 + HsTC2c DNA MER2_type 1 729 0 183 80 0 0 chr13 30103834 30103859 -89641039 + (CA)n Simple_repeat Simple_repeat 2 26 0 540 286 99 19 chr13 30104685 30104898 -89640000 + MIR SINE MIR 21 250 -12 380 301 82 86 chr13 30105958 30106309 -89638589 + L1M2 LINE L1 805 1155 -5694 193 29 59 0 chr13 30106309 30106343 -89638555 + (CGCTG)n Simple_repeat Simple_repeat 3 38 0 380 301 82 86 chr13 30106343 30106529 -89638369 + L1M2 LINE L1 1155 1340 -5509 272 283 163 0 chr13 30106848 30106940 -89637958 - MIR3 SINE MIR -27 181 75 1038 156 69 0 chr13 30107068 30107286 -89637612 + L1MB7 LINE L1 5951 6183 -1 2215 99 3 0 chr13 30107292 30107586 -89637312 + AluSg SINE Alu 1 295 -15 643 135 0 0 chr13 30107600 30107696 -89637202 + AluJb SINE Alu 197 292 -20 204 323 77 0 chr13 30107852 30107917 -89636981 - L2 LINE L2 -65 3207 3138 235 363 20 20 chr13 30108295 30108397 -89636501 - MIR SINE MIR -85 123 22 8755 106 37 81 chr13 30108770 30109105 -89635793 + Tigger4(Zombi) DNA MER2_type 1 349 -2382 186 103 0 0 chr13 30109105 30109134 -89635764 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8755 106 37 81 chr13 30109134 30109659 -89635239 + Tigger4(Zombi) DNA MER2_type 349 895 -1836 860 97 0 0 chr13 30109659 30109772 -89635126 - AluSp/q SINE Alu -11 302 190 8755 106 37 81 chr13 30109772 30110462 -89634436 + Tigger4(Zombi) DNA MER2_type 895 1591 -1140 4964 97 13 49 chr13 30110482 30110666 -89634232 + Tigger4(Zombi) DNA MER2_type 1908 2097 -634 2244 104 0 3 chr13 30110666 30110965 -89633933 + AluSc SINE Alu 1 298 -11 4964 97 13 49 chr13 30110965 30111135 -89633763 + Tigger4(Zombi) DNA MER2_type 2097 2272 -459 2156 131 3 13 chr13 30111135 30111447 -89633451 - AluSx SINE Alu -3 309 1 4964 97 13 49 chr13 30111447 30111760 -89633138 + Tigger4(Zombi) DNA MER2_type 2272 2541 -190 2214 121 0 0 chr13 30111760 30112057 -89632841 + AluSx SINE Alu 1 297 -15 4964 97 13 49 chr13 30112057 30112242 -89632656 + Tigger4(Zombi) DNA MER2_type 2541 2731 0 195 133 0 0 chr13 30112333 30112363 -89632535 + L2 LINE L2 3277 3306 -7 22 0 0 0 chr13 30113641 30113663 -89631235 + AT_rich Low_complexity Low_complexity 1 22 0 184 318 83 55 chr13 30113747 30113964 -89630934 - L2 LINE L2 -221 3051 2829 989 194 133 5 chr13 30113967 30114178 -89630720 - MER8 DNA MER2_type -1 238 1 2319 106 0 0 chr13 30114706 30114999 -89629899 + AluSq SINE Alu 1 293 -20 282 354 62 22 chr13 30115158 30115336 -89629562 + L3 LINE CR1 103 287 -1290 652 283 78 27 chr13 30115426 30115865 -89629033 + MLT1J LTR MaLR 1 429 -21 342 336 62 0 chr13 30115891 30116019 -89628879 + L3 LINE CR1 433 568 -1009 715 159 0 0 chr13 30116172 30116285 -89628613 - AluSx SINE Alu -10 302 190 835 88 0 56 chr13 30116286 30116411 -89628487 - AluSx SINE Alu -195 118 1 2202 111 19 3 chr13 30116423 30116730 -89628168 - AluSx SINE Alu 0 312 1 362 250 21 43 chr13 30116826 30116966 -89627932 - MLT1J LTR MaLR -53 458 322 452 179 0 0 chr13 30117057 30117141 -89627757 - L1ME2 LINE L1 -36 6128 6045 248 343 116 7 chr13 30117199 30117338 -89627560 + L3 LINE CR1 691 848 -729 4320 10 6 0 chr13 30117338 30117829 -89627069 + L1PA2 LINE L1 5662 6155 0 1359 203 44 20 chr13 30117839 30118134 -89626764 + AluJo SINE Alu 1 302 -10 365 229 141 77 chr13 30118155 30118325 -89626573 - L1ME3A LINE L1 -31 6139 5959 2347 101 0 7 chr13 30118443 30118750 -89626148 - AluSc SINE Alu -4 305 1 717 235 62 96 chr13 30118750 30119345 -89625553 - L1MC5 LINE L1 -459 7502 6928 707 224 23 95 chr13 30119360 30119691 -89625207 - MER77 LTR ERV1 -7 598 375 869 190 0 6 chr13 30119706 30119869 -89625029 - MLT1A2 LTR MaLR -212 162 1 2286 82 0 3 chr13 30121028 30121353 -89623545 - AluY SINE Alu 0 324 1 2255 106 0 3 chr13 30121363 30121666 -89623232 - AluSq SINE Alu -11 302 1 1433 181 100 15 chr13 30122153 30122423 -89622475 + AluJo SINE Alu 1 293 -19 1850 150 0 31 chr13 30122425 30122747 -89622151 + AluSx SINE Alu 1 313 0 26 0 0 0 chr13 30122882 30122908 -89621990 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr13 30123100 30123129 -89621769 + AT_rich Low_complexity Low_complexity 1 29 0 2217 90 7 0 chr13 30123234 30123522 -89621376 - AluSg SINE Alu -20 290 1 24 0 0 0 chr13 30123525 30123549 -89621349 + AT_rich Low_complexity Low_complexity 1 24 0 2726 156 126 16 chr13 30126126 30126683 -89618215 - LTR26E LTR ERV1 -4 618 1 21 57 0 0 chr13 30126854 30126889 -89618009 + AT_rich Low_complexity Low_complexity 1 35 0 2507 72 0 0 chr13 30126920 30127225 -89617673 - AluY SINE Alu -6 305 1 338 295 42 76 chr13 30127624 30127823 -89617075 - MIR SINE MIR -40 222 32 673 226 35 48 chr13 30127894 30128124 -89616774 - LTR16A LTR ERVL -15 435 209 261 250 278 28 chr13 30128554 30128698 -89616200 - MER5A DNA MER1_type 0 189 10 534 240 135 21 chr13 30128770 30128962 -89615936 - MLT1C LTR MaLR -34 433 220 3148 94 32 2 chr13 30129105 30129574 -89615324 - MER41A LTR ERV1 0 554 72 338 206 0 0 chr13 30130354 30130417 -89614481 - L2 LINE L2 0 3313 3251 250 370 0 12 chr13 30130551 30130632 -89614266 + MIR3 SINE MIR 14 93 -115 1895 181 15 0 chr13 30131957 30132299 -89612599 + MER7A DNA MER2_type 2 346 0 997 134 13 0 chr13 30132532 30132681 -89612217 - AluSc SINE Alu -20 289 139 243 0 0 0 chr13 30132709 30132736 -89612162 + (TA)n Simple_repeat Simple_repeat 2 28 0 2380 97 0 3 chr13 30132736 30133044 -89611854 - AluSg SINE Alu -3 307 1 335 282 35 101 chr13 30133204 30133431 -89611467 - L1MC4 LINE L1 -9 8033 7822 471 291 12 6 chr13 30133453 30133618 -89611280 - L1ME2 LINE L1 -1 6163 5998 561 256 68 37 chr13 30133691 30134012 -89610886 - L1MDa LINE L1 -4882 1198 868 1116 252 128 43 chr13 30134015 30134475 -89610423 + MLT1D LTR MaLR 7 505 0 1123 199 16 29 chr13 30134475 30134791 -89610107 - L1MDa LINE L1 -5191 879 568 443 321 30 57 chr13 30134908 30135004 -89609894 - L1M4 LINE L1 -1306 5800 5703 2069 97 7 39 chr13 30135004 30135313 -89609585 - AluSx SINE Alu -5 307 9 443 321 30 57 chr13 30135313 30135478 -89609420 - L1M4 LINE L1 -1403 5703 5546 683 227 0 0 chr13 30135505 30135637 -89609261 - FLAM_C SINE Alu 0 133 2 302 198 74 58 chr13 30135637 30135751 -89609147 - L1M4 LINE L1 -1671 5435 5317 500 349 67 21 chr13 30135763 30136047 -89608851 - L1M4 LINE L1 -1822 5284 4988 360 257 71 0 chr13 30136110 30136250 -89608648 - L1MEd LINE L1 -5062 1057 908 688 167 21 7 chr13 30136252 30136396 -89608502 - L1MA9 LINE L1 0 6312 6167 3134 237 63 27 chr13 30136399 30139046 -89605852 - L1M4 LINE L1 -3534 3572 1 332 296 10 0 chr13 30139230 30139328 -89605570 - L1MEd LINE L1 -5364 755 657 218 294 15 0 chr13 30139531 30139599 -89605299 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 1884 167 3 13 chr13 30139635 30139947 -89604951 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr13 30140131 30140153 -89604745 + AT_rich Low_complexity Low_complexity 1 22 0 482 249 59 63 chr13 30140235 30140472 -89604426 + L2 LINE L2 3078 3313 0 2294 174 30 16 chr13 30141311 30141737 -89603161 - MSTB1 LTR MaLR 0 432 1 7452 210 33 16 chr13 30141737 30143360 -89601538 - MSTB1-int LTR MaLR 0 1651 1 2131 178 45 21 chr13 30143360 30143782 -89601116 - MSTB1 LTR MaLR 0 432 1 180 111 0 0 chr13 30143875 30143902 -89600996 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 469 221 28 142 chr13 30144451 30144623 -89600275 + Charlie7 DNA MER1_type 1937 2127 -485 2319 101 0 3 chr13 30144623 30144921 -89599977 - AluSq SINE Alu -16 297 1 1730 159 3 10 chr13 30144928 30145217 -89599681 - AluJb SINE Alu -25 287 1 469 221 28 142 chr13 30145217 30145289 -89599609 + Charlie7 DNA MER1_type 2133 2160 -452 219 370 58 22 chr13 30145355 30145633 -89599265 - L2 LINE L2 -1109 2205 1918 289 94 19 19 chr13 30145655 30145708 -89599190 - MST-int LTR MaLR -265 1386 1334 383 311 67 21 chr13 30145719 30146002 -89598896 - L2 LINE L2 -1440 1874 1579 269 348 109 0 chr13 30146615 30146707 -89598191 - MIR SINE MIR -69 139 38 2495 76 0 0 chr13 30147297 30147601 -89597297 + AluY SINE Alu 1 304 -7 346 290 0 35 chr13 30152019 30152188 -89592710 + T-rich Low_complexity Low_complexity 2 164 0 256 158 0 0 chr13 30152450 30152488 -89592410 - 5S rRNA rRNA -83 38 1 2197 91 0 7 chr13 30152511 30152797 -89592101 - AluY SINE Alu 0 311 28 525 165 18 9 chr13 30153219 30153328 -89591570 + MLT1B LTR MaLR 205 314 -76 233 346 176 0 chr13 30153379 30153515 -89591383 - MIR3 SINE MIR -11 197 38 2099 116 0 11 chr13 30153598 30153882 -89591016 + AluSx SINE Alu 1 281 -31 180 365 58 0 chr13 30154904 30155008 -89589890 - L2 LINE L2 -7 3265 3156 241 339 66 25 chr13 30155289 30155410 -89589488 - MER5B DNA MER1_type -2 176 51 1985 132 55 17 chr13 30155976 30156324 -89588574 - MER46B DNA MER2_type 0 236 1 40 37 0 0 chr13 30156672 30156726 -89588172 + AT_rich Low_complexity Low_complexity 1 54 0 2427 26 0 0 chr13 30156802 30157074 -89587824 + AluY SINE Alu 39 310 -1 21 57 0 0 chr13 30157165 30157200 -89587698 + AT_rich Low_complexity Low_complexity 1 35 0 2138 125 0 0 chr13 30157663 30157959 -89586939 + AluSx SINE Alu 1 296 -16 430 191 40 32 chr13 30157970 30158096 -89586802 + L1MC3 LINE L1 7651 7777 -8 186 71 0 0 chr13 30158196 30158224 -89586674 + (TG)n Simple_repeat Simple_repeat 1 28 0 386 336 77 65 chr13 30158280 30158697 -89586201 + L2 LINE L2 2851 3272 0 401 0 20 0 chr13 30158703 30158752 -89586146 + (TG)n Simple_repeat Simple_repeat 2 51 0 224 200 60 0 chr13 30161477 30161527 -89583371 - MIR SINE MIR -114 148 96 783 290 131 11 chr13 30162140 30162582 -89582316 + L2 LINE L2 2811 3305 -8 26 30 0 0 chr13 30164513 30164546 -89580352 + AT_rich Low_complexity Low_complexity 1 33 0 234 310 28 0 chr13 30165069 30165140 -89579758 + L2 LINE L2 3197 3269 -3 2126 137 0 3 chr13 30165172 30165485 -89579413 + AluSx SINE Alu 1 312 0 24 53 0 0 chr13 30165652 30165690 -89579208 + AT_rich Low_complexity Low_complexity 1 38 0 430 349 57 6 chr13 30167871 30168046 -89576852 + MER5A DNA MER1_type 1 184 -5 2077 116 0 42 chr13 30168986 30169319 -89575579 + AluSq SINE Alu 1 313 0 226 322 17 0 chr13 30169462 30169521 -89575377 + L2 LINE L2 3203 3262 -10 406 330 153 5 chr13 30171719 30171934 -89572964 - MIR SINE MIR -6 256 10 217 301 163 39 chr13 30171950 30172103 -89572795 - MIR SINE MIR -71 191 20 683 227 53 0 chr13 30172161 30172311 -89572587 + MER5A DNA MER1_type 32 189 0 22 35 0 0 chr13 30173241 30173270 -89571628 + AT_rich Low_complexity Low_complexity 1 29 0 333 333 81 16 chr13 30173604 30173727 -89571171 - L2 LINE L2 -3 3269 3139 1918 107 0 0 chr13 30173733 30173986 -89570912 + AluSx SINE Alu 47 299 -13 314 285 90 35 chr13 30176408 30176552 -89568346 - MIR SINE MIR -17 245 94 1802 176 6 16 chr13 30176554 30176867 -89568031 + AluJb SINE Alu 1 310 -2 1032 52 29 29 chr13 30176901 30177075 -89567823 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 858 159 0 25 chr13 30177387 30177544 -89567354 + MER20 DNA MER1_type 1 153 -66 287 173 111 0 chr13 30179565 30179646 -89565252 + L1MB2 LINE L1 6082 6171 0 1386 192 39 42 chr13 30181266 30181291 -89563607 - MER1B DNA MER1_type -2405 307 283 1873 163 13 16 chr13 30181291 30181604 -89563294 - AluSx SINE Alu 0 312 1 1386 192 39 42 chr13 30181604 30181886 -89563012 - MER1B DNA MER1_type -2429 283 1 1015 355 178 11 chr13 30182755 30183810 -89561088 + L3 LINE CR1 122 1352 -225 460 254 107 54 chr13 30183859 30184083 -89560815 + L2 LINE L2 3078 3313 0 284 290 91 53 chr13 30184504 30184675 -89560223 + MIR SINE MIR 9 188 -67 451 363 25 6 chr13 30185347 30185504 -89559394 + MIR3 SINE MIR 17 176 -32 182 271 42 0 chr13 30187124 30187172 -89557726 + L3b LINE CR1 1423 1472 -111 414 0 0 0 chr13 30188823 30188869 -89556029 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 68 0 0 chr13 30188999 30189043 -89555855 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 30189090 30189111 -89555787 + AT_rich Low_complexity Low_complexity 1 21 0 794 226 14 42 chr13 30189570 30189727 -89555171 - MER20 DNA MER1_type -8 211 60 2005 158 0 7 chr13 30189727 30190031 -89554867 + AluJb SINE Alu 1 302 -10 794 226 14 42 chr13 30190031 30190090 -89554808 - MER20 DNA MER1_type -159 60 1 180 77 0 0 chr13 30190458 30190484 -89554414 + (CATATA)n Simple_repeat Simple_repeat 3 28 0 21 36 0 0 chr13 30191616 30191644 -89553254 + AT_rich Low_complexity Low_complexity 1 28 0 1751 185 3 0 chr13 30191861 30192159 -89552739 + AluJo SINE Alu 3 301 -11 180 265 68 77 chr13 30192483 30192600 -89552298 - MIR SINE MIR -71 191 76 199 292 250 0 chr13 30192614 30192710 -89552188 - L2 LINE L2 -16 3256 3137 2222 88 0 7 chr13 30192722 30193039 -89551859 + AluSq SINE Alu 1 315 0 303 331 27 20 chr13 30193141 30193289 -89551609 - L2 LINE L2 -207 3065 2917 640 258 185 53 chr13 30193484 30193666 -89551232 + L2 LINE L2 2791 2948 -365 639 0 0 0 chr13 30193666 30193737 -89551161 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 640 258 185 53 chr13 30193737 30194021 -89550877 + L2 LINE L2 2948 3313 0 2182 92 3 33 chr13 30194052 30194357 -89550541 - AluSq SINE Alu -17 296 1 30 27 0 0 chr13 30194458 30194495 -89550403 + AT_rich Low_complexity Low_complexity 1 37 0 192 301 24 36 chr13 30194894 30194977 -89549921 - MIR SINE MIR -48 214 133 2168 108 24 0 chr13 30195006 30195301 -89549597 - AluSg SINE Alu -8 302 1 208 320 100 61 chr13 30195638 30195869 -89549029 - MIR SINE MIR -17 245 6 2077 132 10 0 chr13 30196196 30196491 -89548407 + AluSx SINE Alu 3 300 -12 183 203 0 0 chr13 30197646 30197710 -89547188 + (CA)n Simple_repeat Simple_repeat 2 65 0 326 262 105 17 chr13 30197720 30197892 -89547006 + MER112 DNA MER1_type 60 246 -14 759 276 27 0 chr13 30197931 30198116 -89546782 + MIR SINE MIR 47 236 -26 2206 121 0 0 chr13 30198566 30198864 -89546034 - AluSx SINE Alu -14 298 1 199 196 54 54 chr13 30200195 30200251 -89544647 - L2 LINE L2 0 3272 3217 2131 124 0 7 chr13 30201814 30202105 -89542793 - AluSq SINE Alu -24 289 1 395 310 84 53 chr13 30202211 30202534 -89542364 + L2 LINE L2 1753 2085 -1229 1329 276 131 13 chr13 30203080 30203873 -89541025 + L1ME3A LINE L1 3964 4850 -1296 1503 277 44 36 chr13 30203908 30204105 -89540793 + L1ME3A LINE L1 4987 5181 -989 1945 114 3 55 chr13 30204105 30204412 -89540486 - AluSc SINE Alu -18 291 1 1503 277 44 36 chr13 30204412 30205057 -89539841 + L1ME3A LINE L1 5181 5833 -337 302 104 0 0 chr13 30205369 30205417 -89539481 - MADE1 DNA Mariner 0 80 33 361 276 64 32 chr13 30206868 30207024 -89537874 + MER5A DNA MER1_type 1 161 -28 256 354 26 9 chr13 30207056 30207169 -89537729 - MIR3 SINE MIR -85 123 9 2216 119 0 3 chr13 30207931 30208226 -89536672 - AluSx SINE Alu -18 294 1 687 260 130 21 chr13 30208609 30208894 -89536004 - MER46C DNA MER2_type -21 317 2 2030 122 24 7 chr13 30209626 30209920 -89534978 - AluSx SINE Alu -13 299 1 21 0 0 0 chr13 30211545 30211566 -89533332 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 30212325 30212346 -89532552 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 30212400 30212438 -89532460 + AT_rich Low_complexity Low_complexity 1 38 0 1481 183 74 18 chr13 30216427 30216711 -89528187 - AluJo SINE Alu -10 302 3 237 254 0 16 chr13 30216846 30216909 -89527989 + L1MEd LINE L1 3 64 -6055 852 296 95 24 chr13 30217171 30218067 -89526831 + L1MEd LINE L1 578 1620 -870 649 111 0 0 chr13 30218317 30218407 -89526491 + AluSq SINE Alu 151 240 -73 301 321 0 9 chr13 30218550 30218656 -89526242 + MLT1I LTR MaLR 61 165 -244 2223 51 0 48 chr13 30218656 30218951 -89525947 - AluY SINE Alu -16 295 15 231 348 163 21 chr13 30220659 30221217 -89523681 - L2 LINE L2 -430 2884 2248 279 203 0 0 chr13 30221999 30222058 -89522840 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 25 51 0 0 chr13 30222195 30222234 -89522664 + AT_rich Low_complexity Low_complexity 1 39 0 1623 142 83 10 chr13 30222489 30222595 -89522303 + AluSg SINE Alu 1 98 -212 549 0 0 0 chr13 30222595 30222656 -89522242 + (CA)n Simple_repeat Simple_repeat 2 62 0 1623 142 83 10 chr13 30222656 30222838 -89522060 + AluSg SINE Alu 98 310 0 3781 209 53 48 chr13 30223794 30224441 -89520457 - L1M4 LINE L1 -1118 5264 4607 1523 163 48 0 chr13 30224441 30224693 -89520205 + AluJo SINE Alu 27 290 -22 3781 209 53 48 chr13 30224693 30225182 -89519716 - L1M4 LINE L1 -1775 4607 4122 342 253 61 78 chr13 30225303 30225548 -89519350 - L1M4 LINE L1 -4837 1547 1307 310 294 0 0 chr13 30225894 30225986 -89518912 + L1M4 LINE L1 4936 5027 -1119 606 228 73 0 chr13 30225990 30226112 -89518786 + MER2 DNA MER2_type 1 131 -214 799 203 26 0 chr13 30226112 30226265 -89518633 - Tigger3(Golem) DNA MER2_type -1 3028 2872 542 204 0 76 chr13 30226245 30226377 -89518521 - MLT1E LTR MaLR -471 122 1 * 238 290 110 35 chr13 30226821 30226966 -89517932 - MLT1J LTR MaLR 0 511 356 2034 151 0 0 chr13 30227132 30227430 -89517468 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 30227436 30227457 -89517441 + AT_rich Low_complexity Low_complexity 1 21 0 6928 55 5 3 chr13 30228098 30228984 -89515914 - L1PA8 LINE L1 -2 6170 5284 2270 72 0 10 chr13 30229504 30229809 -89515089 + L1PA5 LINE L1 5852 6153 -1 2539 134 60 0 chr13 30231912 30232314 -89512584 - MSTB LTR MaLR 0 426 1 390 183 0 0 chr13 30233356 30233427 -89511471 + MLT2B3 LTR ERVL 1 71 -483 2130 196 69 37 chr13 30233525 30233989 -89510909 + MLT2B3 LTR ERVL 76 554 0 2342 268 3 10 chr13 30233989 30234608 -89510290 + HERVL-B3 LTR ERVL 1 615 -5039 38 22 0 0 chr13 30234727 30234772 -89510126 + AT_rich Low_complexity Low_complexity 1 45 0 1165 210 69 81 chr13 30235126 30235621 -89509277 - MER39 LTR ERV1 -4 703 1 9860 152 17 10 chr13 30235808 30237438 -89507460 + MER41C-int LTR ERV1 6117 7756 0 2835 167 16 50 chr13 30237438 30238012 -89506886 + MER41C LTR ERV1 1 554 0 1994 155 124 5 chr13 30238014 30238401 -89506497 - MER4D LTR ERV1 -215 688 264 222 37 0 0 chr13 30238447 30238474 -89506424 + (TG)n Simple_repeat Simple_repeat 1 27 0 357 289 141 13 chr13 30238622 30238778 -89506120 + MIR SINE MIR 2 177 -85 476 255 123 13 chr13 30239440 30239675 -89505223 + L1ME4a LINE L1 5346 5606 -515 835 29 10 0 chr13 30239685 30239788 -89505110 + L1PA7 LINE L1 4214 4317 -1829 6948 58 2 1 chr13 30239788 30240665 -89504233 + L1PA7 LINE L1 5265 6151 -3 684 249 29 0 chr13 30240703 30240908 -89503990 + L1ME4a LINE L1 5633 5843 -278 274 305 198 16 chr13 30241225 30241412 -89503486 - L2 LINE L2 -243 3029 2809 258 173 0 39 chr13 30241564 30241616 -89503282 + L2 LINE L2 3223 3272 0 2020 186 72 62 chr13 30241744 30242256 -89502642 + L1MCa LINE L1 9 525 -5901 663 113 81 24 chr13 30242235 30242359 -89502539 + L1MCa LINE L1 1540 1670 -4756 * 273 164 16 49 chr13 30242862 30242923 -89501975 - MLT1J LTR MaLR -221 290 232 322 154 308 0 chr13 30243216 30243320 -89501578 + L1MA9 LINE L1 6177 6312 0 220 336 26 9 chr13 30243387 30243500 -89501398 - L2 LINE L2 -1397 1917 1803 201 269 65 65 chr13 30243668 30243761 -89501137 - L2 LINE L2 -1525 1789 1697 3741 126 48 3 chr13 30243779 30244384 -89500514 - L1PB4 LINE L1 -3 6153 5522 858 203 122 40 chr13 30244467 30244827 -89500071 + MSTC LTR MaLR 3 425 -3 21 0 0 0 chr13 30245498 30245519 -89499379 + AT_rich Low_complexity Low_complexity 1 21 0 438 246 11 109 chr13 30245605 30245788 -89499110 - MIR SINE MIR -3 259 95 899 296 136 34 chr13 30245903 30246118 -89498780 - L3 LINE CR1 -404 1173 981 590 73 0 0 chr13 30246118 30246200 -89498698 - L1PA8 LINE L1 -14 6158 6077 899 296 136 34 chr13 30246200 30246603 -89498295 - L3 LINE CR1 -596 981 492 188 275 100 38 chr13 30246773 30246853 -89498045 - L2 LINE L2 -1847 1467 1383 651 323 183 19 chr13 30246866 30247560 -89497338 - L2 LINE L2 -2035 1279 472 195 42 0 0 chr13 30247634 30247658 -89497240 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 255 264 56 14 chr13 30248450 30248522 -89496376 - L2 LINE L2 -5 3308 3234 666 291 54 9 chr13 30248575 30248798 -89496100 - MIR SINE MIR -26 236 4 237 313 8 53 chr13 30248798 30248920 -89495978 + MIR SINE MIR 106 221 -41 371 261 212 6 chr13 30248971 30249136 -89495762 - MIR SINE MIR -62 200 2 329 358 17 6 chr13 30249508 30249684 -89495214 - L3 LINE CR1 -111 1466 1289 480 256 56 42 chr13 30250268 30250466 -89494432 - MIR3 SINE MIR -33 175 20 399 311 149 45 chr13 30251812 30252371 -89492527 - L2 LINE L2 0 3272 2640 1135 230 122 34 chr13 30252371 30252788 -89492110 + MSTB2 LTR MaLR 1 454 -3 399 311 149 45 chr13 30252788 30252855 -89492043 - L2 LINE L2 -632 2640 2581 216 0 0 0 chr13 30253519 30253543 -89491355 + (A)n Simple_repeat Simple_repeat 1 24 0 219 356 94 19 chr13 30254865 30255025 -89489873 - MIR SINE MIR -57 205 34 1146 168 94 10 chr13 30255110 30255408 -89489490 + MER33 DNA MER1_type 1 323 -1 786 213 29 33 chr13 30256875 30257148 -89487750 - L1M1 LINE L1 -3953 3612 3341 1319 148 12 121 chr13 30257149 30257487 -89487411 + AluSx SINE Alu 2 302 0 2053 279 49 3 chr13 30257509 30258141 -89486757 - L1M1 LINE L1 -4739 2757 2097 426 210 30 0 chr13 30258403 30258503 -89486395 - L1MC3 LINE L1 -315 7470 7368 451 327 68 15 chr13 30258530 30258796 -89486102 + L1M3f LINE L1 16 295 -5033 * 564 60 13 1 chr13 30258789 30258876 -89486022 + L1M2 LINE L1 5701 5787 -504 516 17 0 0 chr13 30258876 30258936 -89485962 + L1P2 LINE L1 5742 5801 -353 * 2409 59 9 0 chr13 30258919 30259266 -89485632 + L1PA7 LINE L1 5644 6152 -2 296 292 46 0 chr13 30259268 30259398 -89485500 - L1M4 LINE L1 -869 6696 6561 235 287 10 10 chr13 30259403 30259504 -89485394 - L1M4 LINE L1 -4124 3441 3341 577 139 0 0 chr13 30259504 30259583 -89485315 + AluS SINE Alu 1 79 -234 396 160 53 75 chr13 30259588 30259682 -89485216 - L1M4 LINE L1 -4655 2841 2750 3282 67 0 0 chr13 30259682 30260102 -89484796 + L1PA7 LINE L1 5729 6148 -6 317 100 0 0 chr13 30260102 30260152 -89484746 + L1M2 LINE L1 5777 5826 -471 * 468 193 26 0 chr13 30260150 30260264 -89484634 + L1MC3 LINE L1 7465 7581 -204 * 1998 66 3 0 chr13 30260257 30260544 -89484354 - L1P LINE L1 -917 5544 5257 * 18303 125 12 63 chr13 30260543 30262680 -89482218 - L1P3 LINE L1 -2181 4280 2383 2267 101 0 0 chr13 30262680 30262976 -89481922 + AluY SINE Alu 1 296 -15 18303 125 12 63 chr13 30262976 30265216 -89479682 - L1P3 LINE L1 -4078 2383 32 1593 161 25 0 chr13 30265216 30265502 -89479396 + MER2 DNA MER2_type 53 345 0 1009 215 12 4 chr13 30265529 30265780 -89479118 - L1M4 LINE L1 -1898 4248 3996 1546 199 104 12 chr13 30266340 30266763 -89478135 + MLT1C LTR MaLR 6 467 0 2787 10 0 0 chr13 30267193 30267498 -89477400 - AluYa5 SINE Alu -6 305 1 288 387 29 7 chr13 30267653 30267790 -89477108 + MIR SINE MIR 3 142 -66 198 0 0 0 chr13 30267929 30267951 -89476947 + (TA)n Simple_repeat Simple_repeat 1 22 0 373 289 74 110 chr13 30268619 30269010 -89475888 + LTR67 LTR ERVL 2 378 -179 514 306 0 6 chr13 30269196 30269356 -89475542 + ERVL LTR ERVL 4049 4207 -1557 755 306 69 34 chr13 30269372 30269780 -89475118 + ERVL LTR ERVL 4913 5334 -430 2023 109 0 18 chr13 30271114 30271424 -89473474 + AluSg SINE Alu 1 305 0 210 305 221 0 chr13 30271718 30271813 -89473085 + MIR SINE MIR 22 137 -71 256 237 18 26 chr13 30272758 30272872 -89472026 - L1MC/D LINE L1 -1904 5904 5792 336 323 126 12 chr13 30273548 30273715 -89471183 + MIR SINE MIR 21 206 -56 4336 51 0 0 chr13 30273720 30274253 -89470645 + L1PA5 LINE L1 5622 6154 0 263 208 42 0 chr13 30274390 30274438 -89470460 + MIR SINE MIR 95 144 -64 6763 72 2 1 chr13 30274753 30276337 -89468561 - L1PA7 LINE L1 -11 6143 4558 2615 22 38 0 chr13 30278056 30278369 -89466529 - L1PA4 LINE L1 -3 6152 5828 641 132 0 0 chr13 30278569 30278675 -89466223 - L1MA4 LINE L1 -6 6294 6189 300 167 0 0 chr13 30278732 30278792 -89466106 - L1MB5 LINE L1 0 6174 6115 2315 179 7 11 chr13 30278888 30279425 -89465473 - L1MB5 LINE L1 -55 6119 5518 8328 179 109 30 chr13 30279434 30280939 -89463959 + L1MB3 LINE L1 230 1982 -4400 1808 138 21 10 chr13 30280939 30281258 -89463640 + AluSx SINE Alu 1 312 0 8328 179 109 30 chr13 30281258 30282033 -89462865 + L1MB3 LINE L1 1982 2694 -3688 2011 168 5 36 chr13 30282034 30282311 -89462587 + LTR44 LTR ERV1 1 262 -257 2401 67 0 19 chr13 30282311 30282623 -89462275 - AluY SINE Alu -5 306 1 2011 168 5 36 chr13 30282623 30282763 -89462135 + LTR44 LTR ERV1 262 405 -114 1318 145 21 34 chr13 30282765 30282785 -89462113 + L1MA8 LINE L1 5022 5041 -1139 1900 128 39 3 chr13 30282785 30283120 -89461778 + L1MA8 LINE L1 5940 6286 -5 1318 145 21 34 chr13 30283120 30283292 -89461606 + L1MA8 LINE L1 5041 5214 -966 2025 116 46 17 chr13 30283292 30283594 -89461304 + AluSx SINE Alu 1 311 -1 1318 145 21 34 chr13 30283594 30283854 -89461044 + L1MA8 LINE L1 5214 5464 -716 388 184 61 0 chr13 30283853 30283951 -89460947 + L1MB3 LINE L1 4644 4747 -1635 * 3488 168 33 7 chr13 30283953 30284651 -89460247 + L1MB3 LINE L1 5703 6418 -1 1926 211 12 5 chr13 30284660 30285236 -89459662 - L1M3 LINE L1 -709 5471 4891 643 233 52 13 chr13 30285238 30285470 -89459428 - MER20B DNA MER1_type -44 739 499 525 264 127 55 chr13 30285496 30285788 -89459110 - MER20B DNA MER1_type -354 429 117 967 190 12 40 chr13 30285879 30286074 -89458824 - L1MC4a LINE L1 -525 7283 7095 2420 69 3 31 chr13 30286074 30286393 -89458505 - AluSp SINE Alu -3 310 1 967 190 12 40 chr13 30286393 30286450 -89458448 - L1MC4a LINE L1 -713 7095 7038 1247 84 21 21 chr13 30286554 30286813 -89458085 + AluY SINE Alu 93 351 0 2282 93 0 3 chr13 30286820 30287130 -89457768 + AluY SINE Alu 1 309 -2 2131 231 44 26 chr13 30287136 30287606 -89457292 - L1MC4a LINE L1 -776 7032 6547 258 32 0 0 chr13 30287606 30287637 -89457261 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 2131 231 44 26 chr13 30287637 30287781 -89457117 - L1MC4a LINE L1 -1261 6547 6407 2381 122 67 10 chr13 30287781 30288184 -89456714 + MSTB LTR MaLR 1 426 0 210 300 75 12 chr13 30288272 30288352 -89456546 - MIR SINE MIR -96 166 82 543 291 101 20 chr13 30289134 30289430 -89455468 + Charlie2 DNA MER1_type 1 320 -2542 573 167 15 38 chr13 30289440 30289572 -89455326 + Charlie2 DNA MER1_type 1856 1984 -878 985 211 115 40 chr13 30289680 30290149 -89454749 + Charlie2 DNA MER1_type 1978 2481 -381 11338 197 20 29 chr13 30290149 30290312 -89454586 + L1PA16 LINE L1 2733 2896 -3973 1969 97 31 0 chr13 30290312 30290570 -89454328 + AluSx SINE Alu 36 301 -11 11338 197 20 29 chr13 30290570 30292210 -89452688 + L1PA16 LINE L1 2896 4550 -2319 2081 153 0 0 chr13 30292210 30292510 -89452388 + AluSx SINE Alu 1 300 -12 11338 197 20 29 chr13 30292510 30294879 -89450019 + L1PA16 LINE L1 4550 6866 -3 649 221 84 42 chr13 30294883 30295218 -89449680 + Charlie2 DNA MER1_type 2476 2824 -38 772 274 36 36 chr13 30295403 30295732 -89449166 - MER110 LTR ERV1 -12 479 151 2643 61 0 0 chr13 30295779 30296089 -89448809 - AluSg SINE Alu 0 310 1 337 263 0 0 chr13 30296089 30296165 -89448733 - MER5A DNA MER1_type -113 76 1 1882 44 0 18 chr13 30296785 30297013 -89447885 + AluY SINE Alu 88 311 0 572 200 75 0 chr13 30297019 30297139 -89447759 + MER5A DNA MER1_type 61 189 0 708 322 22 0 chr13 30297777 30298004 -89446894 - MIR SINE MIR -28 234 3 376 224 48 34 chr13 30298106 30298253 -89446645 + MER53 DNA DNA 1 149 -40 1897 152 10 3 chr13 30298634 30298936 -89445962 - AluSx SINE Alu -8 304 1 314 303 159 3 chr13 30299187 30299385 -89445513 + MLT1J1 LTR MaLR 105 325 -125 2146 98 10 19 chr13 30299716 30300023 -89444875 + AluSx SINE Alu 1 304 -8 186 381 129 14 chr13 30300860 30301070 -89443828 + L2 LINE L2 2606 2839 -475 233 169 17 0 chr13 30301417 30301476 -89443422 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 234 292 42 25 chr13 30301579 30301699 -89443199 - LTR16C LTR ERVL 0 491 370 287 263 102 54 chr13 30302177 30302363 -89442535 - L1MC/D LINE L1 -2022 5855 5661 232 226 0 130 chr13 30302389 30302458 -89442440 - L1MC/D LINE L1 -5013 1383 1307 2088 120 17 10 chr13 30302458 30302759 -89442139 - AluSx SINE Alu -9 303 1 232 226 0 130 chr13 30302759 30302804 -89442094 - L1MC/D LINE L1 -5089 1307 1289 1940 122 4 7 chr13 30302804 30303074 -89441824 + AluSx SINE Alu 1 269 -43 232 226 0 130 chr13 30303074 30303104 -89441794 - L1MC/D LINE L1 -5107 1289 1257 296 27 0 0 chr13 30304103 30304140 -89440758 - PABL_A-int LTR ERV1 -3312 1703 1667 444 118 0 0 chr13 30304228 30304296 -89440602 + (TA)n Simple_repeat Simple_repeat 1 68 0 279 0 0 0 chr13 30304824 30304855 -89440043 + (TA)n Simple_repeat Simple_repeat 1 31 0 499 262 55 18 chr13 30305112 30305276 -89439622 - L2 LINE L2 -4 3309 3140 597 288 41 0 chr13 30305351 30305570 -89439328 - LTR16A LTR ERVL -166 284 57 894 312 60 10 chr13 30305593 30306070 -89438828 - L2 LINE L2 -159 3154 2644 398 204 9 80 chr13 30306246 30306359 -89438539 - MIR SINE MIR -106 156 52 5561 229 60 65 chr13 30306474 30308923 -89435975 - L1M4b LINE L1 -1689 5268 2884 3819 91 0 6 chr13 30308923 30309437 -89435461 - MER9 LTR ERVK 0 511 1 5561 229 60 65 chr13 30309437 30309697 -89435201 - L1M4b LINE L1 -4073 2884 2624 246 235 0 0 chr13 30309814 30309882 -89435016 - L1M4b LINE L1 -4598 2540 2473 640 121 0 0 chr13 30310020 30310119 -89434779 + L1PA8 LINE L1 6074 6172 0 925 268 57 16 chr13 30310155 30310521 -89434377 - L1M4b LINE L1 -4551 2408 2028 752 118 59 0 chr13 30310545 30310680 -89434218 - L1MA9 LINE L1 -2 6310 6168 2224 149 47 5 chr13 30310680 30311082 -89433816 - MSTB LTR MaLR 0 426 8 1980 144 39 23 chr13 30311094 30311482 -89433416 - L1MA9 LINE L1 -139 6173 5780 246 217 17 33 chr13 30311484 30311604 -89433294 + (CATATA)n Simple_repeat Simple_repeat 5 122 0 2734 150 16 23 chr13 30311638 30311937 -89432961 - L1MA9 LINE L1 -512 5779 5479 2835 19 0 0 chr13 30311937 30312248 -89432650 - AluYa5 SINE Alu 0 311 1 2734 150 16 23 chr13 30312248 30312634 -89432264 - L1MA9 LINE L1 -812 5479 5098 5598 207 48 74 chr13 30312699 30314416 -89430482 - L1M4b LINE L1 -4973 1882 182 38009 75 8 3 chr13 30314641 30320746 -89424152 + L1PA5 LINE L1 5 6145 -9 25 65 0 0 chr13 30320747 30320793 -89424105 + AT_rich Low_complexity Low_complexity 1 46 0 498 267 35 6 chr13 30320793 30320907 -89423991 - L1M4b LINE L1 -6682 177 55 198 0 0 0 chr13 30320907 30320929 -89423969 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 498 267 35 6 chr13 30320929 30320986 -89423912 - L1M4b LINE L1 -6804 55 1 2862 151 149 17 chr13 30321687 30322013 -89422885 - LTR8A LTR ERV1 0 727 446 210 37 0 0 chr13 30322013 30322040 -89422858 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2862 151 149 17 chr13 30322040 30322355 -89422543 - LTR8A LTR ERV1 -281 446 1 2264 125 0 0 chr13 30322443 30322748 -89422150 - AluSx SINE Alu -7 305 1 5882 177 38 5 chr13 30323228 30324325 -89420573 + L1M1 LINE L1 943 2076 -5489 2791 34 7 3 chr13 30324325 30324730 -89420168 + MER11A LTR ERVK 1 504 -762 1004 181 0 28 chr13 30324996 30325178 -89419720 - AluJb SINE Alu 0 312 136 396 273 23 2 chr13 30327801 30327977 -89416921 + MIR SINE MIR 13 233 -29 769 285 90 30 chr13 30328086 30329008 -89415890 + L1ME3A LINE L1 3678 4654 -1492 2340 106 96 5 chr13 30329014 30329420 -89415478 - LTR7 LTR ERV1 -7 443 1 482 296 78 14 chr13 30329421 30329908 -89414990 + L1ME3A LINE L1 4650 5167 -979 707 134 45 30 chr13 30329923 30330057 -89414841 + L1M2a LINE L1 -739 4294966692 -7031 266 129 18 33 chr13 30330057 30330117 -89414781 + L1M2a LINE L1 1642 2128 -4299 6690 219 19 5 chr13 30330298 30332179 -89412719 + L1M2a LINE L1 2174 4078 -2348 2383 152 51 54 chr13 30332174 30332726 -89412172 + L1MA6 LINE L1 5751 6300 0 * 327 229 90 64 chr13 30332858 30333045 -89411853 + L1ME3A LINE L1 5683 5881 -289 247 125 0 0 chr13 30333295 30333335 -89411563 - HsTC2 DNA Tc2 -1844 54 15 2375 94 0 3 chr13 30333335 30333634 -89411264 - AluSp SINE Alu -15 298 1 268 265 166 60 chr13 30334622 30334773 -89410125 + MER5A DNA MER1_type 1 167 -22 452 260 46 61 chr13 30335761 30335923 -89408975 - L2 LINE L2 -8 3305 3142 2517 69 0 3 chr13 30335923 30336228 -89408670 + AluY SINE Alu 1 304 -7 453 50 0 0 chr13 30336228 30336288 -89408610 + (TA)n Simple_repeat Simple_repeat 2 61 0 452 260 46 61 chr13 30336288 30336320 -89408578 - L2 LINE L2 -169 3144 3113 2229 108 0 14 chr13 30336526 30336823 -89408075 - AluSx SINE Alu -17 295 3 315 319 41 134 chr13 30337733 30338053 -89406845 - L2 LINE L2 0 3272 2983 250 296 28 0 chr13 30338298 30338369 -89406529 - L2 LINE L2 -7 3265 3193 186 321 71 18 chr13 30338955 30339067 -89405831 - L2 LINE L2 -602 2712 2595 844 251 188 73 chr13 30339098 30339565 -89405333 - MLT1G1 LTR MaLR 0 595 22 2073 146 0 0 chr13 30339626 30339914 -89404984 + AluSx SINE Alu 5 292 -20 1555 192 98 84 chr13 30339923 30340424 -89404474 + MLT2B1 LTR ERVL 13 520 0 280 174 0 0 chr13 30341075 30341121 -89403777 + MIR SINE MIR 112 157 -105 199 204 93 0 chr13 30341159 30341213 -89403685 + MIR SINE MIR 148 206 -56 2293 97 0 3 chr13 30341223 30341523 -89403375 - AluSg SINE Alu -11 299 1 3443 53 24 2 chr13 30342570 30343021 -89401877 + LTR2B LTR ERV1 1 461 -29 499 132 85 9 chr13 30343024 30343130 -89401768 + HERV9 LTR ERV1 787 900 -7726 282 194 0 0 chr13 30343128 30343190 -89401708 + HERV9 LTR ERV1 7503 7564 -835 * 8273 100 85 71 chr13 30343189 30345451 -89399447 + pTR5 LTR ERV1 504 2438 0 2195 83 204 3 chr13 30345478 30345851 -89399047 + LTR7 LTR ERV1 1 448 -2 1477 224 11 50 chr13 30345995 30346325 -89398573 - MLT1A1 LTR MaLR 0 365 50 2147 128 0 3 chr13 30346325 30346615 -89398283 + AluSx SINE Alu 1 289 -23 1477 224 11 50 chr13 30346615 30346664 -89398234 - MLT1A1 LTR MaLR -315 50 1 1294 188 44 32 chr13 30347825 30348166 -89396732 - L1MB4 LINE L1 -6 6174 5830 2495 53 7 0 chr13 30348197 30348496 -89396402 - AluY SINE Alu -10 301 1 2553 231 51 13 chr13 30348524 30349152 -89395746 - MER82 DNA MER2_type 0 653 2 848 181 10 36 chr13 30349158 30349351 -89395547 + MER2 DNA MER2_type 2 189 -156 21 0 0 0 chr13 30349383 30349404 -89395494 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr13 30349478 30349523 -89395375 + AT_rich Low_complexity Low_complexity 1 45 0 301 92 86 18 chr13 30349529 30349692 -89395206 + (TA)n Simple_repeat Simple_repeat 2 175 0 427 79 86 7 chr13 30349768 30349920 -89394978 + (TA)n Simple_repeat Simple_repeat 1 164 0 187 373 20 72 chr13 30349954 30350107 -89394791 + L2 LINE L2 2566 2710 -604 889 187 66 10 chr13 30350144 30350342 -89394556 + MLT1C LTR MaLR 259 467 0 1873 170 68 32 chr13 30350525 30350966 -89393932 + LTR2B LTR ERV1 34 490 0 406 299 50 58 chr13 30351815 30352056 -89392842 + MIR SINE MIR 8 246 -16 742 319 140 38 chr13 30353314 30353895 -89391003 + L3 LINE CR1 562 1235 -342 2395 106 0 0 chr13 30353895 30354207 -89390691 + AluSx SINE Alu 1 312 0 742 319 140 38 chr13 30354207 30354359 -89390539 + L3 LINE CR1 1235 1370 -207 596 290 109 38 chr13 30354482 30354848 -89390050 - MLT1J LTR MaLR -7 504 113 1557 175 45 25 chr13 30355201 30355487 -89389411 + AluJo SINE Alu 3 294 -18 36 23 0 0 chr13 30355810 30355853 -89389045 + AT_rich Low_complexity Low_complexity 1 43 0 1736 192 0 3 chr13 30355853 30356144 -89388754 - AluJb SINE Alu -22 290 1 287 287 70 31 chr13 30357530 30357659 -89387239 - L2 LINE L2 -426 2888 2755 1511 282 216 17 chr13 30358216 30358978 -89385920 - L2 LINE L2 -550 2764 1778 1643 183 23 3 chr13 30358978 30359278 -89385620 + AluJo SINE Alu 1 306 -6 1511 282 216 17 chr13 30359278 30359456 -89385442 - L2 LINE L2 -1536 1778 1637 2361 109 0 0 chr13 30359659 30359963 -89384935 - AluSx SINE Alu -8 304 1 34 55 0 0 chr13 30360523 30360578 -89384320 + AT_rich Low_complexity Low_complexity 1 55 0 234 186 31 56 chr13 30360589 30360750 -89384148 + (TATAA)n Simple_repeat Simple_repeat 4 160 0 657 191 8 84 chr13 30361221 30361487 -89383411 + MER46C DNA MER2_type 37 334 -4 29 47 0 0 chr13 30361771 30361814 -89383084 + AT_rich Low_complexity Low_complexity 1 43 0 2775 157 42 11 chr13 30363409 30363938 -89380960 - LTR35 LTR ERV1 0 618 74 476 83 14 0 chr13 30364118 30364190 -89380708 - MLT1A1 LTR MaLR 0 396 324 282 111 0 0 chr13 30364188 30364233 -89380665 - MADE1 DNA Mariner -35 45 1 * 507 209 112 84 chr13 30364235 30364522 -89380376 - MLT1A1 LTR MaLR -70 295 1 5016 187 75 148 chr13 30364522 30366391 -89378507 - MLT1A1-int LTR MaLR 0 1735 2 1194 218 41 24 chr13 30366392 30366686 -89378212 - MLT1A1 LTR MaLR 0 365 67 270 313 47 26 chr13 30366872 30367064 -89377834 + MLT1K LTR MaLR 381 576 -12 2414 94 0 0 chr13 30367084 30367392 -89377506 + AluY SINE Alu 1 308 -3 17354 61 1 0 chr13 30367558 30373522 -89371376 + L1PA5 LINE L1 11 6152 -2 226 302 71 71 chr13 30373977 30374103 -89370795 - MIR SINE MIR -117 145 20 516 240 0 0 chr13 30374222 30374318 -89370580 - MER63A DNA MER1_type 0 210 115 1812 174 93 30 chr13 30374318 30374779 -89370119 - LTR2B LTR ERV1 0 490 1 481 232 62 0 chr13 30374777 30374889 -89370009 - MER63A DNA MER1_type 0 120 2 * 259 224 0 82 chr13 30374974 30375072 -89369826 - L1MC4 LINE L1 -1339 6703 6614 3699 196 9 15 chr13 30375090 30375948 -89368950 + L1P LINE L1 4505 5357 -789 406 267 39 61 chr13 30377556 30377736 -89367162 - MER5B DNA MER1_type -2 176 1 1164 248 124 21 chr13 30378852 30379319 -89365579 - MLT1H1 LTR MaLR -6 549 35 497 261 73 32 chr13 30379463 30379681 -89365217 + LTR33A LTR ERVL 297 523 0 535 324 34 0 chr13 30379771 30379950 -89364948 - HERV16 LTR ERVL -3422 1574 1390 235 268 330 0 chr13 30379959 30380071 -89364827 + MER5A DNA MER1_type 41 189 0 274 263 12 0 chr13 30380685 30380765 -89364133 + L1MC4a LINE L1 5557 5637 -2171 302 247 0 22 chr13 30381094 30381183 -89363715 - MLT1L LTR MaLR -528 87 1 301 294 139 13 chr13 30381192 30381430 -89363468 + L1MC4a LINE L1 5639 5906 -1902 210 254 0 0 chr13 30381433 30381492 -89363406 + (TA)n Simple_repeat Simple_repeat 1 59 0 33 43 0 0 chr13 30381567 30381614 -89363284 + AT_rich Low_complexity Low_complexity 1 47 0 213 94 0 0 chr13 30382228 30382260 -89362638 + (TG)n Simple_repeat Simple_repeat 2 33 0 444 318 45 23 chr13 30382260 30382436 -89362462 - MIR SINE MIR -69 193 14 5066 210 57 43 chr13 30382615 30384171 -89360727 - L1M4 LINE L1 -4950 1592 16 1897 152 3 23 chr13 30384538 30384677 -89360221 + AluSx SINE Alu 1 141 -171 2187 136 0 0 chr13 30384677 30384971 -89359927 + AluSg SINE Alu 1 294 -16 1897 152 3 23 chr13 30384971 30385133 -89359765 + AluSx SINE Alu 141 296 -16 220 329 12 12 chr13 30385494 30385579 -89359319 - L2 LINE L2 -2 3270 3186 35 54 0 0 chr13 30385633 30385689 -89359209 + AT_rich Low_complexity Low_complexity 1 56 0 4090 269 108 18 chr13 30386339 30388018 -89356880 + L2 LINE L2 1415 3310 -3 315 219 31 10 chr13 30388388 30388484 -89356414 + L1MEd LINE L1 1022 1119 -5000 1976 146 13 3 chr13 30388546 30388854 -89356044 - MER1B DNA MER1_type 0 339 29 697 355 82 7 chr13 30388942 30389368 -89355530 + L1MEd LINE L1 1198 1655 -4474 6605 75 13 5 chr13 30389368 30392488 -89352410 + L1PA7 LINE L1 2937 6151 -3 400 358 47 12 chr13 30392707 30393048 -89351850 - L1MEc LINE L1 -5997 399 47 389 285 17 52 chr13 30393110 30393282 -89351616 - L1M4 LINE L1 -3119 3027 2862 805 245 20 70 chr13 30393282 30393637 -89351261 + L1ME2 LINE L1 5678 6014 -150 25 0 0 0 chr13 30393681 30393706 -89351192 + AT_rich Low_complexity Low_complexity 1 25 0 1756 188 0 13 chr13 30394100 30394404 -89350494 - AluJo SINE Alu -12 300 1 337 253 144 26 chr13 30395868 30396062 -89348836 + L1ME LINE L1 5017 5233 -913 439 310 138 16 chr13 30396102 30396550 -89348348 + L1ME LINE L1 5297 5799 -363 290 241 17 52 chr13 30396721 30396895 -89348003 + (TA)n Simple_repeat Simple_repeat 2 169 0 182 218 0 18 chr13 30396935 30396990 -89347908 + GA-rich Low_complexity Low_complexity 1 54 0 354 271 8 54 chr13 30397001 30397130 -89347768 - MIR SINE MIR -14 248 126 2015 167 34 0 chr13 30398010 30398364 -89346534 + MER47A DNA MER2_type 1 366 0 236 297 0 14 chr13 30398578 30398652 -89346246 - MLT1J2 LTR MaLR -308 142 70 442 288 70 90 chr13 30399020 30399167 -89345731 - L2 LINE L2 -102 3211 3063 2453 66 0 7 chr13 30399167 30399470 -89345428 - AluY SINE Alu -9 302 2 442 288 70 90 chr13 30399470 30399735 -89345163 - L2 LINE L2 -250 3063 2807 1711 214 66 35 chr13 30400128 30400614 -89344284 + L1MC2 LINE L1 21 521 -5905 * 2251 173 24 30 chr13 30400605 30401063 -89343835 + L1MC2 LINE L1 1063 1605 -4821 1777 136 44 57 chr13 30401063 30401379 -89343519 + AluJb SINE Alu 1 312 0 2251 173 24 30 chr13 30401379 30401732 -89343166 + L1MC2 LINE L1 1605 1959 -4467 * 4889 228 24 47 chr13 30401721 30403642 -89341256 + L1MC2 LINE L1 2256 4123 -2303 318 290 0 0 chr13 30403643 30403736 -89341162 + L1MC2 LINE L1 4308 4400 -2026 * 6128 147 21 74 chr13 30403733 30405317 -89339581 + L1MC2 LINE L1 5153 6624 0 1996 199 19 28 chr13 30407683 30408146 -89336752 - LTR40b LTR ERVL -3 459 1 1957 144 0 3 chr13 30408223 30408515 -89336383 - AluSx SINE Alu -21 291 1 2322 138 54 0 chr13 30408725 30409095 -89335803 + MLT1B LTR MaLR 1 390 0 2268 119 0 0 chr13 30409556 30409859 -89335039 + AluSx SINE Alu 1 303 -9 736 126 0 0 chr13 30409861 30409964 -89334934 + AluSp/q SINE Alu 188 290 -23 2063 151 27 0 chr13 30410007 30410345 -89334553 + MER7A DNA MER2_type 1 345 -1 2608 150 13 4 chr13 30410613 30411072 -89333826 - L1MC2 LINE L1 -8 6336 5874 308 237 0 0 chr13 30411170 30411229 -89333669 - L2 LINE L2 -219 3053 2995 208 391 82 9 chr13 30411453 30411563 -89333335 - MIR SINE MIR -57 151 34 901 292 115 5 chr13 30411643 30412016 -89332882 + ERVL LTR ERVL 4719 5132 -632 892 256 79 15 chr13 30412026 30412366 -89332532 + LTR33A LTR ERVL 162 523 0 234 339 16 39 chr13 30412366 30412493 -89332405 + L2 LINE L2 2146 2269 -1045 319 343 64 17 chr13 30412529 30412701 -89332197 - MLT1I LTR MaLR 0 409 230 238 315 96 52 chr13 30412806 30413076 -89331822 + L2 LINE L2 2321 2602 -712 341 308 175 0 chr13 30414053 30414196 -89330702 - MIR SINE MIR -86 176 9 228 349 12 12 chr13 30414207 30414290 -89330608 + L2 LINE L2 3189 3271 -1 267 79 0 0 chr13 30415249 30415287 -89329611 + (TG)n Simple_repeat Simple_repeat 1 38 0 456 19 0 0 chr13 30415556 30415609 -89329289 + (CA)n Simple_repeat Simple_repeat 2 54 0 284 292 97 0 chr13 30417035 30417148 -89327750 + MIR SINE MIR 74 197 -65 587 350 49 55 chr13 30417822 30418390 -89326508 + L1MEd LINE L1 855 1419 -5111 692 164 109 134 chr13 30418409 30418645 -89326253 + MLT1B LTR MaLR 39 268 -122 2211 196 108 65 chr13 30418645 30419310 -89325588 - LTR8A LTR ERV1 0 727 34 600 167 16 24 chr13 30419326 30419452 -89325446 + MLT1B LTR MaLR 266 390 0 482 221 21 35 chr13 30419490 30419635 -89325263 + L1MEd LINE L1 1474 1616 -4914 274 291 50 21 chr13 30419823 30419964 -89324934 + L1MEd LINE L1 1832 1976 -4564 192 111 0 0 chr13 30420439 30420475 -89324423 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 254 250 0 17 chr13 30420751 30420811 -89324087 + GA-rich Low_complexity Low_complexity 2 60 0 3360 124 4 4 chr13 30420958 30421459 -89323439 + MER1A DNA MER1_type 29 529 0 4951 63 11 0 chr13 30421788 30422425 -89322473 - L1PA8 LINE L1 -3 6169 5526 2597 98 25 6 chr13 30423370 30423727 -89321171 + THE1B LTR MaLR 1 364 0 416 241 43 0 chr13 30423811 30423927 -89320971 - MER45A DNA AcHobo 0 178 58 270 339 26 0 chr13 30424389 30424504 -89320394 - MIR SINE MIR -112 150 33 502 273 65 25 chr13 30425190 30425381 -89319517 + MIR SINE MIR 3 195 -62 236 274 69 0 chr13 30425381 30425483 -89319415 + L1ME3A LINE L1 3 111 -6008 214 185 272 0 chr13 30425531 30425623 -89319275 + L2 LINE L2 2949 3065 -248 182 277 0 0 chr13 30425713 30425760 -89319138 + L2 LINE L2 3267 3313 0 348 193 57 23 chr13 30426592 30426680 -89318218 + MER5A DNA MER1_type 1 91 -98 2251 99 10 0 chr13 30426683 30426987 -89317911 - AluSp SINE Alu -2 311 5 499 153 41 0 chr13 30427177 30427275 -89317623 + MER5A DNA MER1_type 88 189 0 215 327 19 29 chr13 30427182 30427286 -89317612 - MER5A DNA MER1_type -83 106 4 * 1382 187 146 31 chr13 30427529 30427947 -89316951 + MER31B LTR ERV1 1 466 0 955 188 8 109 chr13 30428054 30428293 -89316605 + AluJo SINE Alu 3 217 -95 252 171 0 0 chr13 30428294 30428335 -89316563 + FLAM SINE Alu 84 124 -9 321 26 0 0 chr13 30428433 30428471 -89316427 + (TC)n Simple_repeat Simple_repeat 2 39 0 356 311 102 8 chr13 30431346 30431590 -89313308 + L1ME3A LINE L1 3034 3300 -2829 378 282 20 67 chr13 30431914 30432063 -89312835 - MIR SINE MIR -84 178 37 294 95 0 0 chr13 30432705 30432747 -89312151 + (GAA)n Simple_repeat Simple_repeat 2 43 0 526 308 45 32 chr13 30434079 30434326 -89310572 + L1ME3A LINE L1 3662 3911 -2218 1770 174 14 0 chr13 30434353 30434714 -89310184 - AluSx SINE Alu 0 365 1 21 0 0 0 chr13 30434721 30434742 -89310156 + AT_rich Low_complexity Low_complexity 1 21 0 2545 212 36 15 chr13 30434747 30435275 -89309623 - MLT1F LTR MaLR 0 542 4 237 294 42 25 chr13 30435314 30435433 -89309465 + L1ME3A LINE L1 3999 4119 -2010 2109 139 7 3 chr13 30435452 30435753 -89309145 + AluJb SINE Alu 1 302 -10 552 323 69 37 chr13 30435963 30436313 -89308585 + L1ME3A LINE L1 4481 4841 -1288 312 27 0 0 chr13 30436995 30437032 -89307866 + (ATG)n Simple_repeat Simple_repeat 2 38 0 633 68 39 0 chr13 30437032 30437135 -89307763 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 195 302 0 16 chr13 30437484 30437547 -89307351 + MER5B DNA MER1_type 7 68 -110 189 217 22 22 chr13 30437558 30437604 -89307294 - MER5B DNA MER1_type -131 47 2 647 282 104 6 chr13 30437867 30438101 -89306797 - MIR SINE MIR -3 259 4 203 343 0 43 chr13 30438555 30438625 -89306273 - L2 LINE L2 -5 3267 3201 188 323 147 63 chr13 30440755 30441089 -89303809 + L2 LINE L2 2906 3267 -5 2419 86 0 10 chr13 30441220 30441522 -89303376 + AluSc SINE Alu 5 303 -6 21 36 0 0 chr13 30442321 30442349 -89302549 + AT_rich Low_complexity Low_complexity 1 28 0 1773 315 65 17 chr13 30442963 30443611 -89301287 - MER115 DNA AcHobo -11 682 4 1227 275 56 11 chr13 30444151 30444598 -89300300 + L1ME3A LINE L1 5494 5960 -193 1580 178 40 36 chr13 30444605 30444908 -89299990 + AluJo SINE Alu 1 304 -8 648 232 124 36 chr13 30445895 30446089 -89298809 + MIR SINE MIR 49 259 -3 1837 143 0 41 chr13 30446279 30446694 -89298204 + AluSx SINE Alu 2 404 0 750 161 200 0 chr13 30447438 30447593 -89297305 + MER5A DNA MER1_type 1 186 -3 1802 135 95 20 chr13 30447595 30447944 -89296954 - THE1C LTR MaLR 0 375 1 1945 114 75 33 chr13 30448096 30448456 -89296442 - THE1C LTR MaLR 0 375 1 236 215 7 36 chr13 30448652 30448771 -89296127 - L1MDa LINE L1 -3969 2571 2454 236 310 23 62 chr13 30449259 30449388 -89295510 + MLT1I LTR MaLR 269 392 -17 644 235 60 0 chr13 30449389 30449555 -89295343 - MER58C DNA MER1_type 0 215 40 2954 216 59 35 chr13 30449766 30450514 -89294384 - L1MCb LINE L1 -3040 3524 2796 1400 166 15 109 chr13 30450514 30450917 -89293981 - MLT1A1 LTR MaLR 0 365 1 2954 216 59 35 chr13 30450917 30451585 -89293313 - L1MCb LINE L1 -3768 2796 2146 2034 148 0 7 chr13 30451585 30451889 -89293009 - AluSx SINE Alu -10 302 1 2954 216 59 35 chr13 30451889 30452029 -89292869 - L1MCb LINE L1 -4418 2146 2011 1060 200 0 0 chr13 30452029 30452204 -89292694 - FAM SINE Alu 0 175 1 2954 216 59 35 chr13 30452204 30452975 -89291923 - L1MCb LINE L1 -4553 2011 1049 538 253 18 29 chr13 30452975 30453145 -89291753 - L1MCb LINE L1 -5870 175 8 338 221 57 6 chr13 30453163 30453321 -89291577 - L1MDa LINE L1 -4055 2485 2320 2529 104 6 8 chr13 30453325 30453679 -89291219 + THE1A LTR MaLR 1 353 -2 270 0 0 0 chr13 30453719 30453749 -89291149 + (CA)n Simple_repeat Simple_repeat 2 31 0 2020 230 38 11 chr13 30453749 30454270 -89290628 + MER74A LTR ERVL 10 544 -14 7490 223 76 22 chr13 30454283 30455325 -89289573 - L1MDa LINE L1 -4226 2314 1329 4498 71 3 0 chr13 30455325 30455902 -89288996 - L1PA7 LINE L1 -3 6151 5573 7490 223 76 22 chr13 30455902 30457038 -89287860 - L1MDa LINE L1 -5211 1329 19 461 301 75 43 chr13 30457050 30457329 -89287569 - L1 LINE L1 -1127 5019 4732 229 289 169 0 chr13 30457833 30457916 -89286982 + L2 LINE L2 3208 3304 -9 21 36 0 0 chr13 30458428 30458456 -89286442 + AT_rich Low_complexity Low_complexity 1 28 0 320 270 35 35 chr13 30458645 30458760 -89286138 - MLT1J LTR MaLR -67 444 330 186 43 0 0 chr13 30458846 30458869 -89286029 + (TA)n Simple_repeat Simple_repeat 1 23 0 2515 122 12 41 chr13 30458872 30459244 -89285654 - L1PB3 LINE L1 -7 6147 5787 2258 116 7 0 chr13 30459244 30459546 -89285352 - AluSx SINE Alu -8 304 1 2515 122 12 41 chr13 30459546 30459592 -89285306 - L1PB3 LINE L1 -367 5787 5741 276 356 50 0 chr13 30459700 30459801 -89285097 + MIR SINE MIR 1 106 -156 1382 238 118 72 chr13 30459847 30460414 -89284484 - MLT1E LTR MaLR 0 593 1 2081 124 3 0 chr13 30460491 30460781 -89284117 - AluSx SINE Alu -15 297 7 1241 237 134 46 chr13 30461711 30462280 -89282618 + L1MEc LINE L1 1295 1812 -4584 315 0 0 0 chr13 30462280 30462315 -89282583 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1241 237 134 46 chr13 30462315 30462409 -89282489 + L1MEc LINE L1 1812 1896 -4500 2141 104 3 10 chr13 30462409 30462707 -89282191 + AluSx SINE Alu 1 296 -16 1241 237 134 46 chr13 30462707 30462756 -89282142 + L1MEc LINE L1 1896 1939 -4457 180 0 0 0 chr13 30462756 30462776 -89282122 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 1241 237 134 46 chr13 30462776 30462961 -89281937 + L1MEc LINE L1 1939 2274 -4122 780 218 143 4 chr13 30462967 30463247 -89281651 + MER33 DNA MER1_type 6 324 0 253 270 104 0 chr13 30463247 30463362 -89281536 + L1MEc LINE L1 2268 2394 -4002 278 131 246 0 chr13 30463401 30463462 -89281436 - MADE1 DNA Mariner -4 76 1 532 327 183 26 chr13 30463994 30464529 -89280369 + L3 LINE CR1 958 1576 -1 1810 181 29 12 chr13 30464638 30464980 -89279918 - MER7A DNA MER2_type 0 346 1 1554 120 58 82 chr13 30465607 30465899 -89278999 + AluJb SINE Alu 1 285 -27 27 29 0 0 chr13 30465970 30466004 -89278894 + AT_rich Low_complexity Low_complexity 1 34 0 331 229 110 0 chr13 30466316 30466425 -89278473 + MLT1J LTR MaLR 3 123 -388 267 246 0 43 chr13 30466781 30466850 -89278048 + MLT1J2 LTR MaLR 265 330 -120 861 222 11 0 chr13 30467497 30467677 -89277221 - MER97c DNA MER1_type? -908 182 1 22 35 0 0 chr13 30467786 30467815 -89277083 + AT_rich Low_complexity Low_complexity 1 29 0 477 222 269 0 chr13 30467906 30468077 -89276821 + LTR50 LTR ERVL 579 795 0 240 307 123 45 chr13 30468217 30468396 -89276502 + MIR SINE MIR 20 212 -50 37 76 0 0 chr13 30469329 30469408 -89275490 + AT_rich Low_complexity Low_complexity 1 79 0 180 247 68 27 chr13 30469824 30469897 -89275001 + L2 LINE L2 2301 2376 -938 615 121 0 0 chr13 30470160 30470259 -89274639 + (TCTCC)n Simple_repeat Simple_repeat 2 100 0 465 87 19 48 chr13 30470244 30470347 -89274551 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 * 1940 180 0 0 chr13 30470355 30470660 -89274238 - AluJb SINE Alu -7 305 1 2091 131 23 11 chr13 30471243 30471594 -89273304 + THE1A LTR MaLR 1 355 0 11339 89 12 22 chr13 30471594 30472014 -89272884 + THE1A-int LTR MaLR 1 423 -1157 2224 109 0 0 chr13 30472014 30472307 -89272591 - AluSx SINE Alu 0 312 20 11339 89 12 22 chr13 30472307 30473481 -89271417 + THE1A-int LTR MaLR 423 1580 0 2037 129 26 11 chr13 30473481 30473831 -89271067 + THE1A LTR MaLR 1 355 0 815 291 82 12 chr13 30474195 30474514 -89270384 + MLT1H LTR MaLR 209 549 0 409 301 92 32 chr13 30474960 30475209 -89269689 + HAL1b LINE L1 225 488 -860 438 248 27 7 chr13 30475576 30475725 -89269173 - MLT2B1 LTR ERVL -42 478 327 48 72 0 0 chr13 30476092 30476189 -89268709 + AT_rich Low_complexity Low_complexity 1 97 0 2154 118 21 0 chr13 30476492 30476779 -89268119 + AluSx SINE Alu 1 293 -19 502 254 144 28 chr13 30477116 30477435 -89267463 + HsTC2 DNA Tc2 498 853 -1045 251 277 54 8 chr13 30477643 30477773 -89267125 + L1ME4a LINE L1 5974 6109 -12 2178 171 66 34 chr13 30477923 30478511 -89266387 - MER21B LTR ERV1 -15 856 199 456 86 0 0 chr13 30478511 30478581 -89266317 - MER57B LTR ERV1 0 434 365 254 121 61 10 chr13 30478904 30479003 -89265895 + (TA)n Simple_repeat Simple_repeat 1 104 0 208 137 39 0 chr13 30479063 30479114 -89265784 + (TA)n Simple_repeat Simple_repeat 1 53 0 207 233 116 101 chr13 30479116 30479245 -89265653 + L3 LINE CR1 618 748 -829 217 317 35 48 chr13 30479415 30479560 -89265338 - MER5A DNA MER1_type -43 146 4 329 252 111 74 chr13 30480251 30480386 -89264512 + MIR3 SINE MIR 9 148 -60 250 255 54 54 chr13 30480407 30480556 -89264342 - MLT1J2 LTR MaLR 0 450 302 415 275 41 119 chr13 30481013 30481282 -89263616 - MIR SINE MIR 0 262 15 186 302 16 63 chr13 30481294 30481357 -89263541 - MIR SINE MIR -62 146 87 24 0 0 0 chr13 30481698 30481722 -89263176 + AT_rich Low_complexity Low_complexity 1 24 0 255 259 47 0 chr13 30482216 30482301 -89262597 + CT-rich Low_complexity Low_complexity 3 91 0 327 262 138 11 chr13 30482457 30482677 -89262221 + L1M4 LINE L1 1054 1198 -1309 951 283 188 50 chr13 30483306 30483481 -89261417 + HAL1 LINE L1 123 273 -2234 2258 189 36 72 chr13 30483481 30484116 -89260782 + LTR9 LTR ERV1 1 612 0 951 283 188 50 chr13 30484116 30484681 -89260217 + HAL1 LINE L1 273 759 -1748 1540 196 36 0 chr13 30484681 30484961 -89259937 + AluJo SINE Alu 13 302 -10 951 283 188 50 chr13 30484961 30485065 -89259833 + HAL1 LINE L1 759 847 -1660 1826 202 66 7 chr13 30485065 30485505 -89259393 - MLT1C LTR MaLR -1 466 1 951 283 188 50 chr13 30485505 30486453 -89258445 + HAL1 LINE L1 847 2164 -343 232 204 0 0 chr13 30486639 30486688 -89258210 + HAL1 LINE L1 1490 1538 -969 206 323 31 0 chr13 30486688 30486753 -89258145 + L2 LINE L2 2512 2578 -736 361 248 91 52 chr13 30486920 30487150 -89257748 + LTR40b LTR ERVL 136 374 -88 2104 209 87 26 chr13 30487201 30487809 -89257089 + L1MB7 LINE L1 5530 6174 -10 260 263 37 37 chr13 30487810 30488000 -89256898 + HAL1 LINE L1 991 1180 -1327 323 282 224 4 chr13 30488375 30488634 -89256264 + HAL1 LINE L1 1557 1872 -635 2193 123 0 13 chr13 30488649 30488957 -89255941 + AluSc SINE Alu 2 305 -4 372 284 195 2 chr13 30489407 30489592 -89255306 + HAL1b LINE L1 754 2358 -149 436 174 42 8 chr13 30489662 30489798 -89255100 + L1MA4A LINE L1 2249 2350 -157 994 153 7 0 chr13 30489881 30490077 -89254821 + AluSg/x SINE Alu 132 328 0 2627 51 0 3 chr13 30490592 30490904 -89253994 + AluY SINE Alu 1 311 0 229 289 184 7 chr13 30491786 30491938 -89252960 + MIR SINE MIR 15 193 -69 286 250 92 0 chr13 30492303 30492379 -89252519 - MER63 DNA MER1_type 0 1061 979 395 227 0 0 chr13 30492382 30492457 -89252441 - MER63 DNA MER1_type -312 750 676 360 242 39 92 chr13 30492565 30492718 -89252180 - MIR SINE MIR -76 186 42 805 208 51 10 chr13 30493017 30493214 -89251684 + MSTB2 LTR MaLR 1 205 -252 6785 58 16 0 chr13 30493272 30494270 -89250628 - L1PA7 LINE L1 -13 6141 5142 2623 73 14 0 chr13 30494271 30494642 -89250256 + L1P LINE L1 4064 4439 -1707 888 170 18 58 chr13 30494664 30494888 -89250010 + MSTB2 LTR MaLR 243 457 0 266 310 159 0 chr13 30495594 30495707 -89249191 - L2 LINE L2 -2 3270 3140 187 238 12 88 chr13 30496127 30496207 -89248691 - L2 LINE L2 -549 2765 2692 2426 79 0 16 chr13 30497804 30498109 -89246789 - AluSc SINE Alu -9 300 1 207 123 53 18 chr13 30498810 30498867 -89246031 + (TTA)n Simple_repeat Simple_repeat 3 61 0 432 297 51 0 chr13 30498868 30498986 -89245912 + L2 LINE L2 3149 3272 0 1375 191 78 50 chr13 30499184 30499582 -89245316 - LTR27 LTR ERV1 -22 614 206 181 293 24 0 chr13 30499667 30499708 -89245190 + L3 LINE CR1 1529 1570 -7 1094 135 43 5 chr13 30499926 30500111 -89244787 - LTR28 LTR ERV1 -816 204 13 356 253 68 27 chr13 30500235 30500381 -89244517 - Charlie8 DNA MER1_type -2214 203 52 557 351 93 47 chr13 30500667 30501304 -89243594 + L2 LINE L2 2572 3251 -21 23 54 0 0 chr13 30501738 30501775 -89243123 + AT_rich Low_complexity Low_complexity 1 37 0 1016 199 0 6 chr13 30504242 30504413 -89240485 + AluJb SINE Alu 133 302 -10 4078 89 32 0 chr13 30504845 30505429 -89239469 + L1PA10 LINE L1 5566 6168 0 2192 114 0 3 chr13 30506351 30506649 -89238249 + AluSq SINE Alu 2 298 -15 247 234 26 0 chr13 30506686 30506763 -89238135 + L1MC4 LINE L1 6617 6695 -1347 474 299 73 0 chr13 30506803 30506967 -89237931 - MIR SINE MIR -4 258 83 180 364 13 0 chr13 30507090 30507167 -89237731 + L2 LINE L2 3235 3312 -1 25 0 0 0 chr13 30508092 30508117 -89236781 + AT_rich Low_complexity Low_complexity 1 25 0 344 216 159 0 chr13 30509580 30509668 -89235230 - MIR3 SINE MIR -4 204 103 214 159 91 0 chr13 30510367 30510411 -89234487 - MIR3 SINE MIR -6 202 155 296 350 21 14 chr13 30510433 30510576 -89234322 - MER5A DNA MER1_type -9 180 37 2294 107 0 3 chr13 30511373 30511673 -89233225 + AluSq SINE Alu 1 299 -14 261 319 118 8 chr13 30514856 30514975 -89229923 - MIR3 SINE MIR -9 199 68 3808 167 30 13 chr13 30515208 30515907 -89228991 - MER50 LTR ERV1 -23 711 1 1692 198 149 28 chr13 30517367 30517876 -89227022 + LTR1B LTR ERV1 1 571 -255 256 200 36 0 chr13 30517952 30518007 -89226891 - L2 LINE L2 -3 3310 3254 295 328 35 9 chr13 30520108 30520224 -89224674 + MIR SINE MIR 117 235 -27 336 313 148 8 chr13 30520362 30520490 -89224408 - MER5A DNA MER1_type 0 189 44 251 362 16 16 chr13 30520851 30520978 -89223920 - L2 LINE L2 -3 3269 3143 1166 209 25 11 chr13 30521063 30521487 -89223411 - MLT1D LTR MaLR 0 505 1 201 281 18 18 chr13 30521499 30521556 -89223342 - L2 LINE L2 -208 3064 3008 6384 148 21 24 chr13 30521689 30521864 -89223034 + L1MA4 LINE L1 4825 4999 -1301 2119 108 16 13 chr13 30521864 30522170 -89222728 + AluSg SINE Alu 1 307 -3 6384 148 21 24 chr13 30522170 30523470 -89221428 + L1MA4 LINE L1 4999 6295 -5 2329 85 3 0 chr13 30523478 30523771 -89221127 + AluSx SINE Alu 11 304 -8 836 206 82 5 chr13 30523807 30524026 -89220872 + L1MD3 LINE L1 7759 7994 -1 247 320 229 20 chr13 30524195 30524448 -89220450 - L2 LINE L2 -431 2883 2578 649 263 6 40 chr13 30524467 30524674 -89220224 + MIR SINE MIR 52 248 -14 319 279 146 53 chr13 30524892 30525139 -89219759 - L2 LINE L2 -921 2393 2124 446 281 41 53 chr13 30525174 30525345 -89219553 + L2 LINE L2 3104 3272 0 351 60 0 0 chr13 30525554 30525604 -89219294 + (ATG)n Simple_repeat Simple_repeat 2 51 0 2577 265 131 1 chr13 30525949 30526880 -89218018 + L2 LINE L2 1866 2917 -397 287 297 0 0 chr13 30527509 30527583 -89217315 - MIR SINE MIR -21 241 168 1880 154 7 3 chr13 30528405 30528763 -89216135 + AluSx SINE Alu 1 312 0 205 239 106 80 chr13 30529680 30529793 -89215105 - L2 LINE L2 -18 3295 3180 758 160 0 23 chr13 30531174 30531305 -89213593 + MLT1B LTR MaLR 5 132 -258 1399 144 14 0 chr13 30532511 30532726 -89212172 - MLT1B LTR MaLR -22 368 151 229 361 28 37 chr13 30532924 30533140 -89211758 + L2 LINE L2 941 1154 -2160 1274 139 12 101 chr13 30533706 30533964 -89210934 + MLT2C2 LTR ERVL 230 464 0 1373 206 7 31 chr13 30534449 30534595 -89210303 + AluJo SINE Alu 1 149 -168 2295 102 0 0 chr13 30534595 30534890 -89210008 + AluSc SINE Alu 1 295 -14 1373 206 7 31 chr13 30534890 30535067 -89209831 + AluJo SINE Alu 149 317 0 2290 136 109 13 chr13 30535238 30535634 -89209264 - Tigger2a DNA MER2_type 0 434 1 2414 60 0 3 chr13 30588187 30588488 -89156410 + AluY SINE Alu 1 300 -11 1633 94 17 6 chr13 30588493 30588734 -89156164 + L1PB1 LINE L1 5888 6129 -22 2020 131 0 0 chr13 30589543 30589848 -89155050 - AluJb SINE Alu 0 305 1 32 0 0 0 chr13 30590046 30590078 -89154820 + AT_rich Low_complexity Low_complexity 1 32 0 268 200 0 0 chr13 30590280 30590325 -89154573 + AluSc SINE Alu 127 171 -128 935 144 0 0 chr13 30590327 30590459 -89154439 + AluJo/FRAM SINE Alu 156 287 -25 698 238 101 98 chr13 30590507 30591420 -89153478 + L1MC5 LINE L1 7036 7951 -10 479 209 9 204 chr13 30591468 30591688 -89153210 + MER5B DNA MER1_type 1 177 -1 422 323 29 31 chr13 30591972 30592183 -89152715 - MIR SINE MIR -50 212 3 2225 86 21 0 chr13 30592565 30592855 -89152043 - AluSg SINE Alu -14 296 1 942 107 14 7 chr13 30592983 30593123 -89151775 - AluSq/x SINE Alu -171 141 1 293 195 0 6 chr13 30593612 30593675 -89151223 + FLAM SINE Alu 76 127 -6 1084 259 171 36 chr13 30593684 30594239 -89150659 + HAL1 LINE L1 241 870 -1637 694 237 43 61 chr13 30594244 30594523 -89150375 + HAL1 LINE L1 788 1061 -1446 267 54 0 0 chr13 30594543 30594580 -89150318 + (CA)n Simple_repeat Simple_repeat 2 38 0 226 263 15 86 chr13 30594587 30594785 -89150113 + HAL1 LINE L1 1758 1941 -566 261 57 0 0 chr13 30594785 30594820 -89150078 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1714 108 13 0 chr13 30594829 30595060 -89149838 - AluSp SINE Alu -36 277 44 502 151 0 43 chr13 30595286 30595379 -89149519 + FLAM_C SINE Alu 47 135 -8 858 238 76 39 chr13 30596219 30596576 -89148322 - L1MC5 LINE L1 -426 7535 7166 30 83 0 0 chr13 30597118 30597190 -89147708 + AT_rich Low_complexity Low_complexity 1 72 0 2424 69 0 3 chr13 30597503 30597808 -89147090 - AluY SINE Alu -7 304 1 257 299 16 136 chr13 30599456 30599640 -89145258 - MER5B DNA MER1_type -7 171 10 185 244 35 70 chr13 30599675 30599761 -89145137 + L2 LINE L2 2888 2959 -313 1815 151 10 20 chr13 30600345 30600644 -89144254 + AluSx SINE Alu 1 296 -16 229 261 145 0 chr13 30600891 30600960 -89143938 - L2 LINE L2 -15 3257 3179 2149 178 47 34 chr13 30601545 30602012 -89142886 + MLT2B2 LTR ERVL 4 476 -39 243 301 0 14 chr13 30602014 30602087 -89142811 + (TA)n Simple_repeat Simple_repeat 1 72 0 354 272 53 35 chr13 30603209 30603323 -89141575 + L2 LINE L2 3156 3271 -1 1563 193 0 37 chr13 30603932 30604228 -89140670 + AluJb SINE Alu 1 285 -27 275 241 89 27 chr13 30604935 30605047 -89139851 - L1MC5 LINE L1 -44 7917 7799 215 278 133 11 chr13 30605842 30605932 -89138966 + MER91C DNA MER1_type 2 102 -38 21 0 0 0 chr13 30607593 30607614 -89137284 + AT_rich Low_complexity Low_complexity 1 21 0 339 181 236 0 chr13 30607651 30607723 -89137175 - Tigger5 DNA MER2_type -1 2322 2234 1260 161 22 0 chr13 30607848 30608078 -89136820 - L1MA4 LINE L1 0 6300 6066 2024 112 11 3 chr13 30608085 30608372 -89136526 + AluSx SINE Alu 5 293 -19 911 186 54 14 chr13 30608523 30608744 -89136154 - MER20B DNA MER1_type -1 782 553 1789 221 93 41 chr13 30608991 30609552 -89135346 - L1ME2 LINE L1 -121 6043 5454 2001 113 28 7 chr13 30609753 30610044 -89134854 - AluSx SINE Alu -15 297 1 2154 122 3 0 chr13 30610051 30610355 -89134543 - AluSp SINE Alu -8 305 1 22 35 0 0 chr13 30610557 30610586 -89134312 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 30610816 30610860 -89134038 + AT_rich Low_complexity Low_complexity 1 44 0 197 271 224 28 chr13 30611279 30611386 -89133512 + L2 LINE L2 3138 3265 -7 2195 103 0 3 chr13 30611567 30611857 -89133041 + AluY SINE Alu 1 289 -22 1698 167 21 0 chr13 30612393 30612675 -89132223 - AluJo SINE Alu -24 288 1 1712 154 28 18 chr13 30613237 30613522 -89131376 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 30614416 30614437 -89130461 + AT_rich Low_complexity Low_complexity 1 21 0 600 203 42 0 chr13 30616183 30616301 -89128597 + MER58B DNA MER1_type 216 338 -3 408 294 59 7 chr13 30616313 30616449 -89128449 - MIR SINE MIR -111 151 9 379 216 207 0 chr13 30616498 30616609 -89128289 + MER104 DNA Tc2 47 180 0 202 222 0 0 chr13 30617910 30617946 -89126952 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 263 270 88 7 chr13 30617958 30618106 -89126792 - L1ME3A LINE L1 -220 5950 5791 726 267 11 11 chr13 30618280 30618456 -89126442 - MER5B DNA MER1_type -1 177 2 296 280 104 0 chr13 30618457 30618582 -89126316 - L1ME3A LINE L1 -515 5649 5512 243 0 0 0 chr13 30619152 30619179 -89125719 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 30620395 30620427 -89124471 + AT_rich Low_complexity Low_complexity 1 32 0 1206 197 106 23 chr13 30624459 30624723 -89120175 - AluJo SINE Alu -26 286 1 2032 75 8 8 chr13 30625487 30625754 -89119144 - AluSg1 SINE Alu -9 300 34 30 69 0 0 chr13 30626405 30626463 -89118435 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 30626665 30626702 -89118196 + AT_rich Low_complexity Low_complexity 1 37 0 670 274 102 6 chr13 30626812 30627155 -89117743 - L1ME4a LINE L1 -264 5857 5482 388 253 140 26 chr13 30627211 30627509 -89117389 - L1ME4a LINE L1 -738 5426 5086 375 300 40 25 chr13 30627547 30627709 -89117189 + MER5A DNA MER1_type 1 179 -10 387 329 75 32 chr13 30627726 30628006 -89116892 - L1ME4a LINE L1 -1125 5021 4730 210 171 0 0 chr13 30628331 30628372 -89116526 + (CA)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr13 30628526 30628550 -89116348 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 30628860 30628888 -89116010 + AT_rich Low_complexity Low_complexity 1 28 0 614 282 111 9 chr13 30630195 30630411 -89114487 - MIR SINE MIR -21 241 4 2047 133 7 3 chr13 30630908 30631202 -89113696 - AluSx SINE Alu -17 295 1 251 86 0 0 chr13 30631218 30631253 -89113645 - U2 snRNA snRNA -153 35 1 316 293 96 30 chr13 30631566 30631733 -89113165 - L1ME4a LINE L1 -1726 4420 4243 1556 179 51 4 chr13 30632424 30632697 -89112201 - AluJo SINE Alu -24 288 3 2299 95 0 0 chr13 30632728 30633063 -89111835 + AluSx SINE Alu 1 335 0 195 133 0 0 chr13 30634512 30634542 -89110356 - L2 LINE L2 -7 3306 3277 4964 97 13 49 chr13 30634633 30634818 -89110080 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 2214 121 0 0 chr13 30634818 30635115 -89109783 - AluSx SINE Alu -15 297 1 4964 97 13 49 chr13 30635115 30635428 -89109470 - Tigger4(Zombi) DNA MER2_type -190 2541 2218 2156 131 3 13 chr13 30635428 30635740 -89109158 + AluSx SINE Alu 1 309 -3 4964 97 13 49 chr13 30635740 30635910 -89108988 - Tigger4(Zombi) DNA MER2_type -513 2218 2097 2262 97 0 3 chr13 30635910 30636208 -89108690 - AluSc SINE Alu -12 297 1 4964 97 13 49 chr13 30636208 30636392 -89108506 - Tigger4(Zombi) DNA MER2_type -634 2097 1908 8749 106 37 82 chr13 30636412 30637102 -89107796 - Tigger4(Zombi) DNA MER2_type -1140 1591 872 868 97 0 0 chr13 30637102 30637216 -89107682 + AluSp/q SINE Alu 190 303 -10 8749 106 37 82 chr13 30637216 30637741 -89107157 - Tigger4(Zombi) DNA MER2_type -1859 872 349 186 103 0 0 chr13 30637741 30637770 -89107128 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8749 106 37 82 chr13 30637770 30638105 -89106793 - Tigger4(Zombi) DNA MER2_type -2382 349 1 235 363 20 20 chr13 30638478 30638580 -89106318 + MIR SINE MIR 22 123 -85 204 323 77 0 chr13 30638958 30639023 -89105875 + L2 LINE L2 3138 3207 -65 643 135 0 0 chr13 30639179 30639275 -89105623 - AluJb SINE Alu -20 292 197 2188 102 3 0 chr13 30639289 30639583 -89105315 - AluSg SINE Alu -15 295 1 1038 156 69 0 chr13 30639589 30639807 -89105091 - L1MB7 LINE L1 -1 6183 5951 272 283 163 0 chr13 30639935 30640027 -89104871 + MIR3 SINE MIR 75 181 -27 377 303 84 87 chr13 30640346 30640532 -89104366 - L1M2 LINE L1 -5509 1340 1155 193 29 59 0 chr13 30640532 30640566 -89104332 + (CAGCG)n Simple_repeat Simple_repeat 3 38 0 377 303 84 87 chr13 30640566 30640917 -89103981 - L1M2 LINE L1 -5694 1155 805 540 286 99 19 chr13 30641977 30642190 -89102708 - MIR SINE MIR -12 250 21 183 80 0 0 chr13 30643012 30643037 -89101861 + (TG)n Simple_repeat Simple_repeat 2 26 0 2398 255 35 14 chr13 30643625 30644339 -89100559 - HsTC2c DNA MER2_type 0 729 1 418 264 0 85 chr13 30644350 30644551 -89100347 + L2 LINE L2 3130 3313 0 2203 183 36 21 chr13 30645741 30646271 -89098627 - MER74A LTR ERVL -13 545 8 181 314 78 0 chr13 30646352 30646403 -89098495 + L2 LINE L2 3210 3264 -8 2488 66 0 3 chr13 30646602 30646906 -89097992 + AluY SINE Alu 1 303 -8 936 100 15 0 chr13 30646908 30647038 -89097860 + AluY SINE Alu 170 301 -10 261 0 0 0 chr13 30647038 30647067 -89097831 + (CA)n Simple_repeat Simple_repeat 2 30 0 262 229 16 0 chr13 30648388 30648449 -89096449 + L2 LINE L2 3244 3305 -8 2208 109 0 10 chr13 30649809 30650112 -89094786 + AluSx SINE Alu 1 300 -12 590 274 50 11 chr13 30650307 30650486 -89094412 - MIR SINE MIR -71 191 6 219 218 51 13 chr13 30652778 30652856 -89092042 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr13 30653678 30653699 -89091199 + AT_rich Low_complexity Low_complexity 1 21 0 201 350 0 0 chr13 30654134 30654194 -89090704 + CT-rich Low_complexity Low_complexity 2 61 0 405 0 0 0 chr13 30656484 30656529 -89088369 + (TG)n Simple_repeat Simple_repeat 2 46 0 4826 48 0 3 chr13 30657249 30657870 -89087028 + L1PA6 LINE L1 5414 6032 -122 209 284 15 30 chr13 30658160 30658227 -89086671 + L2 LINE L2 3184 3249 -23 * 459 242 58 0 chr13 30658218 30658338 -89086560 + MIR SINE MIR 115 241 -21 2247 95 0 7 chr13 30658438 30658734 -89086164 - AluSg SINE Alu -1 309 16 315 0 0 0 chr13 30659359 30659394 -89085504 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 31 0 0 chr13 30660185 30660217 -89084681 + AT_rich Low_complexity Low_complexity 1 32 0 360 0 0 0 chr13 30661054 30661094 -89083804 + (GA)n Simple_repeat Simple_repeat 1 40 0 362 254 34 72 chr13 30661931 30661976 -89082922 - MER112 DNA MER1_type -32 228 183 1962 154 7 0 chr13 30661976 30662274 -89082624 - AluSx SINE Alu -12 300 1 362 254 34 72 chr13 30662274 30662437 -89082461 - MER112 DNA MER1_type -77 183 28 589 225 305 0 chr13 30663123 30663310 -89081588 + MIR SINE MIR 19 262 0 239 265 265 8 chr13 30663327 30663444 -89081454 - L2 LINE L2 -1 3271 3125 2196 150 54 2 chr13 30664127 30664533 -89080365 - MSTB1 LTR MaLR 0 432 6 183 167 0 0 chr13 30665846 30665888 -89079010 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr13 30667797 30667829 -89077069 + AT_rich Low_complexity Low_complexity 1 32 0 324 0 0 0 chr13 30669222 30669258 -89075640 + (TG)n Simple_repeat Simple_repeat 2 37 0 253 303 138 11 chr13 30670233 30670421 -89074477 - MIR SINE MIR -4 258 47 2292 111 3 0 chr13 30671264 30671561 -89073337 - AluSq SINE Alu -15 298 1 25 0 0 0 chr13 30672171 30672196 -89072702 + AT_rich Low_complexity Low_complexity 1 25 0 1043 195 70 3 chr13 30673312 30673492 -89071406 - MER33 DNA MER1_type -2272 313 106 1807 141 57 34 chr13 30673492 30673790 -89071108 + AluSg SINE Alu 1 305 -5 1043 195 70 3 chr13 30673790 30673896 -89071002 - MER33 DNA MER1_type -2479 106 8 464 246 291 0 chr13 30673911 30674155 -89070743 - MER102a DNA MER1_type -15 315 1 240 271 34 0 chr13 30674461 30674520 -89070378 + L2 LINE L2 3156 3216 -56 3877 141 22 6 chr13 30674561 30675233 -89069665 + L1MB3 LINE L1 5499 6181 -2 538 268 69 57 chr13 30676227 30676522 -89068376 + L1ME4a LINE L1 4957 5268 -910 2119 111 26 61 chr13 30676522 30676829 -89068069 + THE1B LTR MaLR 1 294 -70 2190 87 17 7 chr13 30676829 30677127 -89067771 + AluSg SINE Alu 3 303 -7 2119 111 26 61 chr13 30677127 30677196 -89067702 + THE1B LTR MaLR 294 364 0 538 268 69 57 chr13 30677196 30677360 -89067538 + L1ME4a LINE L1 5268 5429 -749 977 284 53 26 chr13 30677452 30678018 -89066880 + L1ME4a LINE L1 5540 6120 -1 189 278 42 0 chr13 30678066 30678138 -89066760 + L2 LINE L2 2357 2431 -883 252 0 0 0 chr13 30678457 30678485 -89066413 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 323 308 117 8 chr13 30678485 30678605 -89066293 - L2 LINE L2 -13 3259 3127 541 292 36 18 chr13 30678854 30679022 -89065876 - MIR SINE MIR -17 245 75 239 288 72 65 chr13 30679028 30679181 -89065717 + L2 LINE L2 3159 3312 -1 459 305 8 0 chr13 30680185 30680303 -89064595 - MIR SINE MIR -127 135 17 220 180 33 16 chr13 30681111 30681172 -89063726 + CT-rich Low_complexity Low_complexity 2 63 0 2074 143 0 0 chr13 30682827 30683113 -89061785 - AluSx SINE Alu -26 286 1 1875 122 31 60 chr13 30683141 30683207 -89061691 - MER2 DNA MER2_type 0 344 278 774 105 0 0 chr13 30683207 30683321 -89061577 + (TA)n Simple_repeat Simple_repeat 2 115 0 2442 83 0 3 chr13 30683321 30683621 -89061277 - AluY SINE Alu -12 299 1 1875 122 31 60 chr13 30683621 30683906 -89060992 - MER2 DNA MER2_type -64 280 2 267 203 36 65 chr13 30684053 30684106 -89060792 - MER112 DNA MER1_type -61 199 146 2133 118 0 14 chr13 30684106 30684402 -89060496 + AluSx SINE Alu 1 292 -20 267 203 36 65 chr13 30684402 30684486 -89060412 - MER112 DNA MER1_type -114 146 66 216 0 0 0 chr13 30685084 30685108 -89059790 + (T)n Simple_repeat Simple_repeat 1 24 0 256 294 118 0 chr13 30685865 30685967 -89058931 + MIR SINE MIR 30 143 -65 2408 82 0 0 chr13 30686152 30686457 -89058441 + AluY SINE Alu 1 305 -6 28 0 0 0 chr13 30687142 30687170 -89057728 + AT_rich Low_complexity Low_complexity 1 28 0 2257 103 10 0 chr13 30687707 30687998 -89056900 + AluSg SINE Alu 1 294 -16 238 265 44 0 chr13 30688297 30688365 -89056533 - L2 LINE L2 0 3313 3243 387 308 96 58 chr13 30689388 30689596 -89055302 + MIR SINE MIR 46 261 -1 1318 170 19 8 chr13 30690617 30690882 -89054016 - L1MA4 LINE L1 -4 6296 6029 1852 101 0 41 chr13 30690969 30691236 -89053662 - AluSx SINE Alu -56 256 1 1867 168 166 9 chr13 30691375 30691810 -89053088 - MLT1D LTR MaLR -2 503 1 695 304 32 12 chr13 30692878 30693136 -89051762 - MIR SINE MIR 0 262 2 568 233 134 12 chr13 30693202 30693374 -89051524 - MIR SINE MIR -51 211 19 205 303 90 66 chr13 30693445 30693567 -89051331 - L2 LINE L2 -38 3234 3110 2302 114 0 0 chr13 30693750 30694058 -89050840 - AluSx SINE Alu -4 308 1 1149 183 50 4 chr13 30694548 30694789 -89050109 - MLT1D LTR MaLR 0 505 254 251 308 13 0 chr13 30696328 30696406 -89048492 + MER117 DNA MER1_type 119 197 0 370 286 137 44 chr13 30696454 30696681 -89048217 + MIR SINE MIR 3 250 -12 24 77 0 0 chr13 30698344 30698396 -89046502 + AT_rich Low_complexity Low_complexity 1 52 0 352 292 56 28 chr13 30698744 30698888 -89046010 - MIR3 SINE MIR -11 197 50 324 346 46 8 chr13 30698982 30699112 -89045786 + MIR SINE MIR 10 144 -118 875 151 50 0 chr13 30699306 30699473 -89045425 + FRAM SINE Alu 1 174 0 1729 298 89 66 chr13 30700646 30701701 -89043197 + L2 LINE L2 1925 3063 -250 259 71 24 0 chr13 30701701 30701743 -89043155 + MADE1 DNA Mariner 1 43 -37 1729 298 89 66 chr13 30701743 30702000 -89042898 + L2 LINE L2 3063 3313 0 1687 186 25 0 chr13 30704502 30704787 -89040111 + AluJo SINE Alu 2 293 -19 347 256 113 77 chr13 30705601 30705875 -89039023 - L1ME4a LINE L1 -24 6097 5814 381 288 8 32 chr13 30705879 30706004 -89038894 + MER5A DNA MER1_type 25 146 -43 234 191 0 0 chr13 30706344 30706391 -89038507 + CT-rich Low_complexity Low_complexity 3 49 0 633 330 84 34 chr13 30707078 30707709 -89037189 - L2 LINE L2 -30 3242 2589 213 259 0 19 chr13 30707840 30707894 -89037004 - L2 LINE L2 -92 3221 3169 866 115 54 11 chr13 30707915 30708182 -89036716 + L1MB3 LINE L1 5706 6183 0 559 297 136 25 chr13 30708295 30708802 -89036096 - L2 LINE L2 -160 3153 2593 226 315 14 0 chr13 30708940 30709013 -89035885 + tRNA-Glu-GAG tRNA tRNA 2 75 0 248 252 185 17 chr13 30709040 30709159 -89035739 + MIR SINE MIR 16 154 -108 773 267 142 44 chr13 30709480 30710044 -89034854 + L1M4 LINE L1 4371 4879 -1267 225 0 0 0 chr13 30710044 30710069 -89034829 + (TG)n Simple_repeat Simple_repeat 2 26 0 773 267 142 44 chr13 30710069 30710129 -89034769 + L1M4 LINE L1 4879 4932 -1214 4727 150 41 6 chr13 30710129 30711001 -89033897 - MER4D LTR ERV1 0 903 1 773 267 142 44 chr13 30711001 30711258 -89033640 + L1M4 LINE L1 4932 5339 -807 750 184 0 43 chr13 30711933 30712096 -89032802 - L2 LINE L2 0 3313 3158 269 244 278 0 chr13 30712107 30712197 -89032701 + MER5A DNA MER1_type 73 187 -2 317 317 48 21 chr13 30712882 30713027 -89031871 + L2 LINE L2 3155 3303 -10 25 0 0 0 chr13 30714785 30714810 -89030088 + AT_rich Low_complexity Low_complexity 1 25 0 289 274 186 0 chr13 30715131 30715233 -89029665 - L2 LINE L2 -5 3267 3147 1921 140 10 19 chr13 30715320 30715634 -89029264 - AluJb SINE Alu -1 311 1 324 287 126 90 chr13 30715658 30715743 -89029155 + L2 LINE L2 1993 2073 -1241 2307 99 6 6 chr13 30715743 30716055 -89028843 - AluSx SINE Alu 0 312 1 324 287 126 90 chr13 30716055 30716627 -89028271 + L2 LINE L2 2073 2674 -640 196 238 0 0 chr13 30716941 30716983 -89027915 - L2 LINE L2 -5 3308 3267 633 272 52 49 chr13 30717172 30717477 -89027421 + LTR16C LTR ERVL 186 491 0 376 256 45 75 chr13 30717705 30717838 -89027060 - L1M LINE L1 -700 5421 5293 425 316 67 27 chr13 30717896 30718121 -89026777 - L1M4 LINE L1 -859 5287 5054 205 200 0 22 chr13 30718289 30718334 -89026564 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1715 194 43 130 chr13 30718352 30719121 -89025777 - L1MC4 LINE L1 -7 8035 7334 323 294 123 48 chr13 30719221 30719514 -89025384 - L1M4 LINE L1 -1635 4511 4197 333 273 11 57 chr13 30719550 30719726 -89025172 - L1M4 LINE L1 -2391 3755 3588 300 151 0 19 chr13 30719931 30719984 -89024914 + L1MC4 LINE L1 6652 6703 -1339 2242 82 7 7 chr13 30720103 30720397 -89024501 - AluSx SINE Alu -18 294 1 303 356 88 25 chr13 30720633 30720793 -89024105 - MIR3 SINE MIR -4 204 35 233 328 0 0 chr13 30721558 30721619 -89023279 + (CA)n Simple_repeat Simple_repeat 2 62 0 638 287 0 92 chr13 30721871 30721994 -89022904 - MIR SINE MIR -6 256 168 2514 64 0 6 chr13 30721994 30722307 -89022591 - AluY SINE Alu 0 311 1 638 287 0 92 chr13 30722307 30722444 -89022454 - MIR SINE MIR -94 168 20 242 200 0 0 chr13 30724406 30724446 -89020452 - MIR SINE MIR -5 257 218 383 326 154 40 chr13 30724889 30725370 -89019528 - L2 LINE L2 -556 2758 2223 240 111 0 0 chr13 30725484 30725520 -89019378 + (TG)n Simple_repeat Simple_repeat 2 37 0 1701 145 24 28 chr13 30726001 30726291 -89018607 - AluJo SINE Alu -22 290 2 206 61 0 30 chr13 30726342 30726375 -89018523 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 221 21 48 chr13 30727474 30727619 -89017279 + MER103 DNA DNA 1 141 -25 2079 111 11 0 chr13 30727693 30727972 -89016926 + AluSx SINE Alu 1 282 -30 528 258 40 69 chr13 30728090 30728365 -89016533 + Charlie8 DNA MER1_type 38 1391 -1026 345 281 29 7 chr13 30728471 30728610 -89016288 + L1ME4a LINE L1 5974 6115 -6 30 27 0 0 chr13 30728923 30728960 -89015938 + AT_rich Low_complexity Low_complexity 1 37 0 327 256 135 8 chr13 30729525 30729658 -89015240 + MIR SINE MIR 98 247 -15 204 373 112 26 chr13 30730266 30730499 -89014399 - L3b LINE CR1 -24 1559 1307 21 0 0 0 chr13 30730738 30730759 -89014139 + AT_rich Low_complexity Low_complexity 1 21 0 1848 154 0 13 chr13 30730764 30731063 -89013835 + AluJo SINE Alu 1 295 -17 282 136 76 0 chr13 30731135 30731201 -89013697 - L1MA10 LINE L1 -7 6327 6257 4308 211 95 18 chr13 30731283 30732446 -89012452 - L1ME1 LINE L1 -162 6004 4633 2090 117 20 3 chr13 30732446 30732745 -89012153 - AluSx SINE Alu -4 308 5 4308 211 95 18 chr13 30732745 30733487 -89011411 - L1ME1 LINE L1 -1533 4633 3950 307 361 191 24 chr13 30733539 30733957 -89010941 - L2 LINE L2 -630 2684 2197 227 231 0 0 chr13 30735052 30735091 -89009807 + L2 LINE L2 3216 3254 -18 291 345 60 0 chr13 30735131 30735299 -89009599 - L2 LINE L2 -1220 2094 1917 698 164 78 0 chr13 30735757 30735873 -89009025 + AluJb SINE Alu 1 125 -187 1962 135 0 7 chr13 30736114 30736403 -89008495 + AluJb SINE Alu 1 287 -25 22 0 0 0 chr13 30736452 30736474 -89008424 + AT_rich Low_complexity Low_complexity 1 22 0 346 278 0 0 chr13 30737447 30737544 -89007354 + MIR SINE MIR 166 262 0 207 244 0 0 chr13 30739591 30739636 -89005262 + (CGG)n Simple_repeat Simple_repeat 2 46 0 206 341 52 44 chr13 30741560 30741695 -89003203 + MIR3 SINE MIR 2 137 -71 245 359 70 23 chr13 30742057 30742185 -89002713 - MIR3 SINE MIR -71 137 4 656 329 51 57 chr13 30742431 30743029 -89001869 + L2 LINE L2 2636 3264 -8 296 269 103 0 chr13 30743589 30743667 -89001231 - L2 LINE L2 -2 3311 3226 181 310 17 0 chr13 30743698 30743756 -89001142 + L2 LINE L2 3214 3272 0 29 0 0 0 chr13 30744480 30744509 -89000389 + AT_rich Low_complexity Low_complexity 1 29 0 207 320 39 39 chr13 30744941 30745019 -88999879 + L2 LINE L2 3163 3240 -32 312 299 31 10 chr13 30745256 30745353 -88999545 + MIR SINE MIR 49 147 -115 39 38 0 0 chr13 30746094 30746147 -88998751 + AT_rich Low_complexity Low_complexity 1 53 0 180 0 0 0 chr13 30747137 30747157 -88997741 + (A)n Simple_repeat Simple_repeat 1 20 0 2292 90 10 0 chr13 30747923 30748223 -88996675 + AluSp SINE Alu 1 303 -10 1268 113 0 0 chr13 30748223 30748391 -88996507 + AluSg/x SINE Alu 138 305 -7 228 231 91 118 chr13 30749286 30749472 -88995426 - MER5A DNA MER1_type -2 187 7 2152 152 0 25 chr13 30749844 30750014 -88994884 - L1MA5 LINE L1 0 6300 6127 2393 102 0 0 chr13 30750014 30750319 -88994579 - AluSq SINE Alu -8 305 1 2152 152 0 25 chr13 30750319 30750550 -88994348 - L1MA5 LINE L1 -173 6127 5909 418 209 38 25 chr13 30751305 30751463 -88993435 + GA-rich Low_complexity Low_complexity 3 162 0 2042 132 0 3 chr13 30751738 30752052 -88992846 + AluSx SINE Alu 5 317 0 308 250 42 10 chr13 30753277 30753373 -88991525 - MIR3 SINE MIR 0 208 110 214 315 82 0 chr13 30753959 30754032 -88990866 - MIR SINE MIR -98 164 86 235 229 242 57 chr13 30755371 30755528 -88989370 - MER5A DNA MER1_type -3 186 1 27 0 0 0 chr13 30755941 30755968 -88988930 + AT_rich Low_complexity Low_complexity 1 27 0 210 329 16 121 chr13 30756872 30757121 -88987777 + L2 LINE L2 2963 3185 -87 230 81 27 0 chr13 30757123 30757160 -88987738 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 21 0 0 0 chr13 30757255 30757276 -88987622 + AT_rich Low_complexity Low_complexity 1 21 0 194 211 276 26 chr13 30758367 30758443 -88986455 + MIR SINE MIR 46 140 -68 1493 123 0 0 chr13 30758956 30759191 -88985707 - L1MA2 LINE L1 0 6304 6070 1749 188 7 7 chr13 30759882 30760185 -88984713 - AluJo SINE Alu -9 303 1 292 250 16 0 chr13 30760423 30760487 -88984411 - L2 LINE L2 0 3313 3249 1150 201 63 35 chr13 30760494 30761100 -88983798 - L1M4 LINE L1 -3594 2788 2171 * 1725 213 52 48 chr13 30761096 30761332 -88983566 - L1M4 LINE L1 -4569 1734 1501 2265 106 0 17 chr13 30761332 30761634 -88983264 - AluSg SINE Alu -13 297 1 1725 213 52 48 chr13 30761634 30762044 -88982854 - L1M4 LINE L1 -4802 1501 777 294 333 8 8 chr13 30762527 30762659 -88982239 - L1M4 LINE L1 -6009 304 173 393 262 284 0 chr13 30762986 30763127 -88981771 + MIR SINE MIR 76 256 -6 471 314 52 87 chr13 30764713 30765082 -88979816 + L2 LINE L2 2917 3272 0 457 360 0 0 chr13 30765144 30765308 -88979590 - MIR SINE MIR 0 262 99 21 0 0 0 chr13 30765578 30765599 -88979299 + AT_rich Low_complexity Low_complexity 1 21 0 469 202 0 83 chr13 30766325 30766434 -88978464 + L2 LINE L2 3168 3267 -5 450 264 101 8 chr13 30766440 30766569 -88978329 + MIR SINE MIR 8 148 -114 2224 95 7 3 chr13 30767528 30767823 -88977075 + AluSc SINE Alu 1 296 -13 24 32 0 0 chr13 30767974 30768005 -88976893 + AT_rich Low_complexity Low_complexity 1 31 0 7187 118 60 25 chr13 30768206 30768861 -88976037 + HSMAR2 DNA Mariner 1 632 -670 2341 112 0 0 chr13 30768861 30769173 -88975725 + AluSx SINE Alu 1 312 0 7187 118 60 25 chr13 30769173 30769774 -88975124 + HSMAR2 DNA Mariner 632 1301 -1 210 37 0 0 chr13 30769798 30769825 -88975073 + (TTTTTA)n Simple_repeat Simple_repeat 3 29 0 189 0 0 0 chr13 30769827 30769848 -88975050 + (TA)n Simple_repeat Simple_repeat 2 22 0 2434 89 0 6 chr13 30769851 30770164 -88974734 - AluY SINE Alu 0 311 1 587 302 47 50 chr13 30770195 30770496 -88974402 - L1MEd LINE L1 -5818 301 2 416 149 0 176 chr13 30770566 30770714 -88974184 - L1MA8 LINE L1 -4 6287 6166 2135 120 0 10 chr13 30770971 30771294 -88973604 + AluSx SINE Alu 1 312 0 353 319 24 30 chr13 30772367 30772536 -88972362 + MIR3 SINE MIR 20 187 -21 233 217 75 142 chr13 30772894 30773000 -88971898 - L2 LINE L2 0 3272 3174 477 335 170 26 chr13 30774014 30774438 -88970460 - L3 LINE CR1 -93 1484 1000 331 266 129 36 chr13 30774545 30774684 -88970214 - L2 LINE L2 -5 3267 3116 181 355 16 0 chr13 30774776 30774838 -88970060 - L2 LINE L2 0 3272 3210 303 365 213 12 chr13 30774850 30775272 -88969626 - L3 LINE CR1 -1046 531 25 414 317 104 0 chr13 30775522 30775724 -88969174 + L2 LINE L2 2562 2784 -530 361 242 106 148 chr13 30775849 30776086 -88968812 + L2 LINE L2 2939 3160 -112 1292 167 174 4 chr13 30776086 30776362 -88968536 - MER33 DNA MER1_type -1 323 1 361 242 106 148 chr13 30776362 30776455 -88968443 + L2 LINE L2 3160 3255 -17 313 143 45 62 chr13 30776839 30776891 -88968007 + (TA)n Simple_repeat Simple_repeat 1 52 -58 2653 90 11 8 chr13 30776891 30777245 -88967653 + THE1A LTR MaLR 1 355 0 12510 93 9 4 chr13 30777245 30777741 -88967157 + THE1A-int LTR MaLR 1 493 -1087 2077 112 7 3 chr13 30777741 30778044 -88966854 + AluSq SINE Alu 1 304 -9 12510 93 9 4 chr13 30778044 30779119 -88965779 + THE1A-int LTR MaLR 493 1580 0 2677 88 8 8 chr13 30779119 30779472 -88965426 + THE1A LTR MaLR 1 353 -2 313 143 45 62 chr13 30779472 30779529 -88965369 + (TA)n Simple_repeat Simple_repeat 49 110 0 186 43 0 0 chr13 30781503 30781526 -88963372 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2170 127 3 0 chr13 30781948 30782256 -88962642 - AluSq SINE Alu -4 309 1 4315 116 57 17 chr13 30782261 30782966 -88961932 - L1MA4 LINE L1 -5 6295 5563 233 247 123 41 chr13 30783157 30783230 -88961668 - L2 LINE L2 0 3272 3194 2180 125 3 3 chr13 30783342 30783647 -88961251 - AluSg SINE Alu -5 305 1 2205 170 22 3 chr13 30783683 30784041 -88960857 + MLT1A1 LTR MaLR 1 365 0 2346 88 0 7 chr13 30784068 30784374 -88960524 + AluY SINE Alu 5 308 -3 409 293 58 29 chr13 30785504 30785678 -88959220 - MIR SINE MIR -56 206 28 227 361 13 48 chr13 30785750 30785915 -88958983 + MIR SINE MIR 38 195 -67 3283 145 105 24 chr13 30785994 30786026 -88958872 - L1MB2 LINE L1 -1 6170 6142 1581 186 0 4 chr13 30786026 30786290 -88958608 - AluJb SINE Alu -49 263 1 3283 145 105 24 chr13 30786290 30786301 -88958597 - L1MB2 LINE L1 -29 6142 6133 2115 131 7 0 chr13 30786301 30786598 -88958300 - AluSx SINE Alu -13 299 1 3283 145 105 24 chr13 30786598 30787192 -88957706 - L1MB2 LINE L1 -38 6133 5473 189 0 0 0 chr13 30787192 30787213 -88957685 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3283 145 105 24 chr13 30787213 30787240 -88957658 - L1MB2 LINE L1 -698 5473 5450 216 0 0 0 chr13 30787337 30787361 -88957537 + (TG)n Simple_repeat Simple_repeat 2 25 0 1994 133 0 3 chr13 30787361 30787647 -88957251 - AluSx SINE Alu -27 285 1 648 154 4 0 chr13 30787887 30788007 -88956891 - LTR12 LTR ERV1 0 714 49 332 224 0 0 chr13 30788007 30788083 -88956815 - LTR30 LTR ERV1 -98 624 549 908 61 9 0 chr13 30788085 30788199 -88956699 - LTR12 LTR ERV1 -440 274 160 * 1292 109 18 138 chr13 30788169 30788490 -88956408 - LTR12 LTR ERV1 -475 239 1 1651 275 62 80 chr13 30788536 30788790 -88956108 - L1MEd LINE L1 -5011 1108 851 2293 104 0 10 chr13 30788790 30789099 -88955799 - AluSx SINE Alu -6 306 1 1651 275 62 80 chr13 30789099 30789971 -88954927 - L1MEd LINE L1 -5268 851 2 2378 100 0 0 chr13 30790756 30791066 -88953832 + AluSg SINE Alu 1 310 0 837 245 92 39 chr13 30791326 30791632 -88953266 - MLT1H LTR MaLR -227 322 1 191 103 26 0 chr13 30791716 30791755 -88953143 + (TA)n Simple_repeat Simple_repeat 1 40 0 198 191 0 0 chr13 30792054 30792096 -88952802 + (TG)n Simple_repeat Simple_repeat 2 43 0 2024 206 130 35 chr13 30792126 30792408 -88952490 - MLT1E2 LTR MaLR -4 622 368 1687 188 40 40 chr13 30792408 30792780 -88952118 - MLT1A2 LTR MaLR 0 374 3 2024 206 130 35 chr13 30792780 30793065 -88951833 - MLT1E2 LTR MaLR -258 368 1 386 38 0 19 chr13 30793086 30793139 -88951759 + (TCTCCC)n Simple_repeat Simple_repeat 1 52 0 7289 55 29 13 chr13 30793139 30794733 -88950165 + SVA Other Other 1 1384 -2 2408 96 0 0 chr13 30795781 30796082 -88948816 - AluSx SINE Alu -11 301 1 27 73 0 0 chr13 30796188 30796243 -88948655 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr13 30796826 30796855 -88948043 + AT_rich Low_complexity Low_complexity 1 29 0 1623 58 10 0 chr13 30797002 30797210 -88947688 + L1P4 LINE L1 5569 5778 -383 2870 94 5 13 chr13 30797244 30797638 -88947260 + L1PA14 LINE L1 5769 6159 -2 268 261 54 27 chr13 30797638 30797743 -88947155 - MIR SINE MIR -134 128 21 1908 271 35 45 chr13 30799858 30800606 -88944292 - MER20B DNA MER1_type -6 777 38 360 267 154 31 chr13 30801929 30802124 -88942774 + MIR SINE MIR 36 254 -8 435 229 181 21 chr13 30802242 30802386 -88942512 + MIR SINE MIR 82 248 -14 346 338 49 29 chr13 30802423 30802627 -88942271 - MIR SINE MIR -48 214 7 1895 151 0 20 chr13 30802697 30803018 -88941880 + AluJo SINE Alu 1 312 0 22 0 0 0 chr13 30804210 30804232 -88940666 + AT_rich Low_complexity Low_complexity 1 22 0 432 325 53 20 chr13 30804503 30804654 -88940244 - L3 LINE CR1 -3 1574 1419 201 208 19 19 chr13 30804779 30804832 -88940066 - L3 LINE CR1 -160 1417 1365 1284 144 47 0 chr13 30804938 30805153 -88939745 - MLT1B LTR MaLR 0 390 166 892 128 0 0 chr13 30805153 30805302 -88939596 - AluSx SINE Alu 0 305 157 834 99 0 9 chr13 30805309 30805420 -88939478 - AluSx SINE Alu -202 110 1 1070 127 24 0 chr13 30805425 30805591 -88939307 - MLT1B LTR MaLR -220 170 1 202 326 78 39 chr13 30805683 30805812 -88939086 - L3 LINE CR1 -602 975 842 448 214 29 43 chr13 30805815 30805955 -88938943 - L2 LINE L2 -54 3259 3122 274 313 40 66 chr13 30806032 30806230 -88938668 - L3 LINE CR1 -757 820 628 315 0 0 0 chr13 30807167 30807202 -88937696 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1199 276 91 12 chr13 30807203 30807608 -88937290 - L2 LINE L2 -16 3297 2861 270 0 0 0 chr13 30807774 30807804 -88937094 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr13 30809134 30809156 -88935742 + AT_rich Low_complexity Low_complexity 1 22 0 597 323 143 25 chr13 30809225 30809618 -88935280 - L2 LINE L2 0 3272 2834 860 356 83 20 chr13 30809699 30810480 -88934418 - L2 LINE L2 -675 2639 1810 324 329 79 67 chr13 30810625 30810968 -88933930 - L2 LINE L2 -16 3256 2910 * 489 308 83 72 chr13 30810941 30811321 -88933577 - L2 LINE L2 -1175 2139 1750 2676 121 62 5 chr13 30811321 30811726 -88933172 - MSTA LTR MaLR 0 428 1 489 308 83 72 chr13 30811726 30811861 -88933037 - L2 LINE L2 -1564 1750 1618 363 73 0 0 chr13 30812562 30812617 -88932281 + (TG)n Simple_repeat Simple_repeat 1 110 0 363 73 0 0 chr13 30812617 30812672 -88932226 + (TG)n Simple_repeat Simple_repeat 2 56 0 240 329 133 7 chr13 30813020 30813163 -88931735 - MIR SINE MIR -6 256 96 3149 210 29 3 chr13 30813482 30814114 -88930784 - L1MB5 LINE L1 -8 6166 5519 598 250 43 67 chr13 30814116 30814324 -88930574 + MER112 DNA MER1_type 17 219 -41 1330 205 24 27 chr13 30814331 30814668 -88930230 + Charlie4a DNA MER1_type 168 503 -5 1327 168 58 70 chr13 30814676 30815004 -88929894 + MER33 DNA MER1_type 1 324 0 27 0 0 0 chr13 30815373 30815400 -88929498 + AT_rich Low_complexity Low_complexity 1 27 0 2359 94 0 0 chr13 30817625 30817923 -88926975 - AluSx SINE Alu -14 298 1 202 121 30 0 chr13 30818566 30818599 -88926299 + CT-rich Low_complexity Low_complexity 2 35 0 283 274 128 17 chr13 30818699 30818816 -88926082 - MIR SINE MIR -69 193 64 2188 113 36 0 chr13 30818866 30819168 -88925730 - AluSq SINE Alu 0 313 1 186 125 31 0 chr13 30819576 30819608 -88925290 + L2 LINE L2 2726 2758 -556 189 204 0 82 chr13 30820743 30820792 -88924106 - L2 LINE L2 0 3313 3269 380 228 0 219 chr13 30821027 30821255 -88923643 - MER91A DNA MER1_type 0 196 19 2324 116 0 0 chr13 30821439 30821750 -88923148 - AluSx SINE Alu -1 311 1 24 0 0 0 chr13 30821805 30821829 -88923069 + AT_rich Low_complexity Low_complexity 1 24 0 547 223 23 15 chr13 30821873 30822003 -88922895 + MIR SINE MIR 74 204 -58 21 0 0 0 chr13 30822767 30822788 -88922110 + AT_rich Low_complexity Low_complexity 1 21 0 2128 116 38 0 chr13 30823016 30823309 -88921589 + AluSx SINE Alu 1 304 -8 643 298 42 17 chr13 30823315 30823553 -88921345 - MIR SINE MIR -5 257 14 527 86 25 0 chr13 30825553 30825634 -88919264 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 21 0 0 0 chr13 30826387 30826408 -88918490 + AT_rich Low_complexity Low_complexity 1 21 0 422 131 179 0 chr13 30827225 30827309 -88917589 - L2 LINE L2 -4 3268 3170 565 233 164 16 chr13 30828504 30828693 -88916205 + MIR SINE MIR 36 252 -10 384 276 73 0 chr13 30830148 30830271 -88914627 + MER94 DNA DNA 2 133 -1 200 163 0 20 chr13 30830557 30830606 -88914292 + CT-rich Low_complexity Low_complexity 2 49 0 342 0 0 0 chr13 30830611 30830649 -88914249 + (CA)n Simple_repeat Simple_repeat 2 39 0 255 114 0 0 chr13 30833021 30833065 -88911833 + (TC)n Simple_repeat Simple_repeat 1 44 0 1898 96 4 0 chr13 30834860 30835110 -88909788 - AluSq SINE Alu -3 310 60 240 200 0 0 chr13 30835739 30835789 -88909109 + GA-rich Low_complexity Low_complexity 3 52 0 493 302 82 22 chr13 30836296 30836528 -88908370 - MLT1L LTR MaLR -362 253 8 2058 138 42 14 chr13 30836551 30836905 -88907993 - THE1B LTR MaLR 0 364 1 184 243 54 0 chr13 30837096 30837133 -88907765 - MIR SINE MIR -185 77 39 655 183 0 25 chr13 30837488 30837608 -88907290 + AluJb SINE Alu 1 117 -195 29 0 0 0 chr13 30837612 30837641 -88907257 + AT_rich Low_complexity Low_complexity 1 29 0 326 304 193 19 chr13 30837964 30838171 -88906727 - MIR SINE MIR 0 262 20 204 303 49 37 chr13 30838853 30839015 -88905883 + L2 LINE L2 2511 2674 -640 285 167 0 0 chr13 30840524 30840572 -88904326 + MIR SINE MIR 65 112 -150 207 293 101 20 chr13 30840696 30840795 -88904103 + MIR SINE MIR 156 262 0 2210 118 0 25 chr13 30841130 30841451 -88903447 - AluSq SINE Alu 0 313 1 255 313 73 10 chr13 30842497 30842593 -88902305 - L2 LINE L2 -18 3254 3153 1139 43 35 0 chr13 30843013 30843178 -88901720 - AluY SINE Alu 0 308 139 207 238 0 0 chr13 30845288 30845330 -88899568 - L2 LINE L2 -10 3303 3262 255 368 120 8 chr13 30845631 30845764 -88899134 + MIR SINE MIR 2 149 -113 1245 198 60 3 chr13 30846012 30846361 -88898537 - Charlie5 DNA MER1_type -10 2602 2234 532 194 11 80 chr13 30846370 30846414 -88898484 - MER3 DNA MER1_type 6 168 123 2215 102 3 0 chr13 30846414 30846708 -88898190 + AluSx SINE Alu 1 295 -17 532 194 11 80 chr13 30846708 30846838 -88898060 - MER3 DNA MER1_type -39 123 6 22 0 0 0 chr13 30846843 30846865 -88898033 + AT_rich Low_complexity Low_complexity 1 22 0 757 124 0 16 chr13 30847478 30847599 -88897299 + AluSg/x SINE Alu 189 307 -5 2386 86 0 6 chr13 30848174 30848487 -88896411 + AluY SINE Alu 1 311 0 1788 163 23 7 chr13 30848618 30848925 -88895973 - AluJo SINE Alu 0 312 1 332 319 44 15 chr13 30849029 30849164 -88895734 - MER5B DNA MER1_type 0 178 40 2363 98 0 0 chr13 30849493 30849790 -88895108 + AluSc SINE Alu 1 297 -12 2304 117 0 3 chr13 30850746 30851055 -88893843 - AluSx SINE Alu -4 308 1 2464 72 0 3 chr13 30851261 30851566 -88893332 + AluY SINE Alu 1 304 -7 29 60 0 0 chr13 30851723 30851773 -88893125 + AT_rich Low_complexity Low_complexity 1 50 0 389 274 97 0 chr13 30852519 30852643 -88892255 + MIR SINE MIR 78 213 -49 198 0 0 0 chr13 30853043 30853065 -88891833 + (A)n Simple_repeat Simple_repeat 1 22 0 924 165 58 0 chr13 30853133 30853321 -88891577 - L1PB4 LINE L1 -1 6155 5957 205 268 107 0 chr13 30856341 30856397 -88888501 - L2 LINE L2 0 3272 3211 267 119 45 30 chr13 30856488 30856555 -88888343 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 634 232 0 102 chr13 30857017 30857302 -88887596 + MER112 DNA MER1_type 4 259 -1 337 293 52 9 chr13 30857554 30857670 -88887228 - L2 LINE L2 -15 3257 3137 286 287 66 103 chr13 30857931 30858203 -88886695 + L2 LINE L2 3010 3271 -1 1956 141 7 3 chr13 30858902 30859193 -88885705 - AluSq SINE Alu -21 292 1 1751 179 3 14 chr13 30859200 30859491 -88885407 - AluJo SINE Alu -24 288 1 436 279 48 33 chr13 30859495 30859767 -88885131 - L1MC5 LINE L1 -168 7793 7518 342 278 106 61 chr13 30860540 30860720 -88884178 - L2 LINE L2 -10 3262 3075 218 355 47 0 chr13 30860748 30860855 -88884043 + L2 LINE L2 2926 3037 -235 321 311 149 19 chr13 30861244 30861405 -88883493 - MIR3 SINE MIR -11 197 16 587 193 155 0 chr13 30861537 30861698 -88883200 + MER5A DNA MER1_type 1 186 -3 2417 66 3 3 chr13 30862496 30862800 -88882098 - AluY SINE Alu -7 304 1 2206 137 7 29 chr13 30863129 30863304 -88881594 + L1MB1 LINE L1 5749 5926 -242 8795 60 6 1 chr13 30863304 30865233 -88879665 - L1PA6 LINE L1 -5 6149 4218 2206 137 7 29 chr13 30865233 30865465 -88879433 + L1MB1 LINE L1 5926 6147 -21 41 36 0 0 chr13 30865466 30865521 -88879377 + AT_rich Low_complexity Low_complexity 1 55 0 338 292 167 0 chr13 30865566 30865686 -88879212 + MIR SINE MIR 49 188 -74 491 294 23 55 chr13 30867050 30867112 -88877786 + L2 LINE L2 3103 3165 -148 267 114 0 0 chr13 30867112 30867156 -88877742 + (TG)n Simple_repeat Simple_repeat 1 44 0 491 294 23 55 chr13 30867156 30867311 -88877587 + L2 LINE L2 3165 3313 0 355 130 101 0 chr13 30868173 30868242 -88876656 + L1MB3 LINE L1 6106 6181 -2 201 263 26 13 chr13 30870633 30870709 -88874189 + GA-rich Low_complexity Low_complexity 5 81 0 685 259 142 13 chr13 30873879 30874111 -88870787 - MIR SINE MIR 0 262 1 1842 161 0 0 chr13 30874936 30875209 -88869689 - AluSx SINE Alu -39 273 1 180 125 0 0 chr13 30875806 30875838 -88869060 + (A)n Simple_repeat Simple_repeat 1 32 0 1214 294 91 47 chr13 30876208 30877707 -88867191 - L1MEd LINE L1 -812 1678 16 248 329 82 53 chr13 30877912 30878119 -88866779 + L2 LINE L2 2845 3057 -215 246 268 188 0 chr13 30878253 30878365 -88866533 - MER112 DNA MER1_type -97 163 31 266 269 67 42 chr13 30878411 30878458 -88866440 + L2 LINE L2 3151 3195 -77 273 98 0 0 chr13 30878458 30878499 -88866399 + (CA)n Simple_repeat Simple_repeat 2 42 0 266 269 67 42 chr13 30878499 30878570 -88866328 + L2 LINE L2 3195 3272 0 498 251 107 27 chr13 30879047 30879234 -88865664 + MIR SINE MIR 42 243 -19 221 232 111 61 chr13 30879864 30879963 -88864935 + MIR SINE MIR 41 144 -64 21 36 0 0 chr13 30881948 30881976 -88862922 + AT_rich Low_complexity Low_complexity 1 28 0 202 298 151 48 chr13 30882999 30883075 -88861823 - L2 LINE L2 -1168 2146 2079 1521 154 64 57 chr13 30883075 30883373 -88861525 + AluJb SINE Alu 5 304 -8 202 298 151 48 chr13 30883373 30883657 -88861241 - L2 LINE L2 -1235 2079 1826 2414 71 0 10 chr13 30883657 30883968 -88860930 + AluY SINE Alu 1 308 -3 202 298 151 48 chr13 30883968 30884130 -88860768 - L2 LINE L2 -1488 1826 1569 287 290 122 38 chr13 30885390 30885521 -88859377 - MIR SINE MIR -109 153 12 449 113 0 0 chr13 30885654 30885725 -88859173 + L1PB4 LINE L1 6072 6142 -14 1502 209 88 59 chr13 30886591 30887283 -88857615 - L1MC5 LINE L1 -49 7912 7201 6794 103 24 10 chr13 30887810 30888929 -88855969 - L1MA2 LINE L1 0 6304 5170 2225 93 13 0 chr13 30888929 30889230 -88855668 - AluSg SINE Alu -5 305 1 6794 103 24 10 chr13 30889230 30889395 -88855503 - L1MA2 LINE L1 -1134 5170 5009 525 186 11 33 chr13 30889512 30889695 -88855203 + CT-rich Low_complexity Low_complexity 1 179 0 210 282 0 56 chr13 30890003 30890074 -88854824 - L2 LINE L2 -202 3070 3004 2121 102 6 38 chr13 30890101 30890416 -88854482 + AluSx SINE Alu 4 308 -4 2254 104 7 3 chr13 30890946 30891254 -88853644 - AluSx SINE Alu -3 309 1 548 128 92 0 chr13 30891423 30891532 -88853366 + L1MB4 LINE L1 6061 6179 -1 21 0 0 0 chr13 30891533 30891554 -88853344 + AT_rich Low_complexity Low_complexity 1 21 0 233 259 0 35 chr13 30892167 30892225 -88852673 - L2 LINE L2 -253 3060 3005 195 129 0 0 chr13 30892847 30892878 -88852020 + (TA)n Simple_repeat Simple_repeat 1 31 0 276 111 0 0 chr13 30892925 30892970 -88851928 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr13 30893058 30893086 -88851812 + AT_rich Low_complexity Low_complexity 1 28 0 1792 117 93 0 chr13 30893686 30893972 -88850926 - AluSc SINE Alu 0 310 1 23 33 0 0 chr13 30894002 30894032 -88850866 + AT_rich Low_complexity Low_complexity 1 30 0 4579 143 31 21 chr13 30894098 30894259 -88850639 - L1MA7 LINE L1 -10 6281 6123 1539 224 64 0 chr13 30894259 30894602 -88850296 - MLT1A1 LTR MaLR 0 365 1 4579 143 31 21 chr13 30894602 30895302 -88849596 - L1MA7 LINE L1 -168 6123 5411 311 315 85 24 chr13 30895999 30896164 -88848734 - L2 LINE L2 -5 3308 3134 2355 38 0 14 chr13 30896973 30897266 -88847632 + L1PA4 LINE L1 5866 6154 -1 1631 176 24 10 chr13 30897277 30897566 -88847332 + AluJb SINE Alu 2 294 -18 319 279 12 23 chr13 30897807 30897893 -88847005 + MIR SINE MIR 8 92 -170 482 243 197 0 chr13 30897903 30898055 -88846843 + MER5A DNA MER1_type 8 189 0 2544 109 3 14 chr13 30898248 30898616 -88846282 + THE1B LTR MaLR 1 364 0 1130 203 40 27 chr13 30898704 30899029 -88845869 + MLT1A1 LTR MaLR 1 391 -37 209 222 22 0 chr13 30899292 30899337 -88845561 - MIR SINE MIR -10 252 207 23 0 0 0 chr13 30899638 30899661 -88845237 + AT_rich Low_complexity Low_complexity 1 23 0 194 66 26 79 chr13 30899661 30899737 -88845161 + (TTAAA)n Simple_repeat Simple_repeat 5 76 0 202 129 54 65 chr13 30899741 30899834 -88845064 + (TTATA)n Simple_repeat Simple_repeat 1 92 0 894 254 65 29 chr13 30900105 30900380 -88844518 - MLT1J LTR MaLR -191 320 36 2199 107 40 0 chr13 30900668 30900967 -88843931 + AluSx SINE Alu 1 311 -1 332 284 44 98 chr13 30901167 30901392 -88843506 - L2 LINE L2 -35 3237 3025 199 300 33 121 chr13 30901852 30902066 -88842832 - L2 LINE L2 -217 3055 2869 1590 137 109 52 chr13 30902066 30902469 -88842429 - LTR37A LTR ERV1 0 426 1 199 300 33 121 chr13 30902469 30902527 -88842371 - L2 LINE L2 -403 2869 2807 334 320 36 107 chr13 30902819 30903203 -88841695 - L2 LINE L2 -1 3271 2915 2110 145 0 25 chr13 30904799 30905117 -88839781 + AluSx SINE Alu 1 310 -2 533 230 157 6 chr13 30905890 30906068 -88838830 - MIR SINE MIR -11 251 47 675 172 96 13 chr13 30907786 30907943 -88836955 - L1MD3 LINE L1 0 7995 7826 448 167 33 0 chr13 30907959 30908049 -88836849 - MER21A LTR ERV1 -358 573 481 536 183 0 30 chr13 30908049 30908180 -88836718 - L1MC3 LINE L1 -161 7624 7498 330 238 86 19 chr13 30909471 30909731 -88835167 - L1ME4a LINE L1 -164 5957 5679 1066 253 70 24 chr13 30909770 30910269 -88834629 - L1ME4a LINE L1 -505 5616 4942 444 286 71 24 chr13 30911448 30911616 -88833282 + MIR3 SINE MIR 8 183 -25 26 30 0 0 chr13 30911824 30911857 -88833041 + AT_rich Low_complexity Low_complexity 1 33 0 889 116 52 0 chr13 30912197 30912352 -88832546 - L1MB7 LINE L1 -20 6164 6002 279 285 105 2 chr13 30913732 30913908 -88830990 - MIR SINE MIR -16 246 13 5388 110 9 4 chr13 30914062 30914252 -88830646 - L1PB1 LINE L1 0 6151 5964 2318 113 0 0 chr13 30914252 30914553 -88830345 - AluSg SINE Alu -9 301 1 5388 110 9 4 chr13 30914553 30915685 -88829213 - L1PB1 LINE L1 -187 5964 4841 4159 189 2 12 chr13 30915685 30915755 -88829143 + L1 LINE L1 3859 3928 -2218 2440 82 3 0 chr13 30915755 30916059 -88828839 + AluY SINE Alu 1 305 -6 4159 189 2 12 chr13 30916059 30916911 -88827987 + L1 LINE L1 3928 4772 -1374 2093 100 0 24 chr13 30917409 30917726 -88827172 - AluSx SINE Alu 0 310 1 21 0 0 0 chr13 30919402 30919423 -88825475 + AT_rich Low_complexity Low_complexity 1 21 0 2261 91 0 14 chr13 30921087 30921384 -88823514 + AluSc SINE Alu 3 295 -14 182 233 47 0 chr13 30921991 30922034 -88822864 + L2 LINE L2 3209 3253 -19 390 239 65 0 chr13 30922380 30922472 -88822426 - MER5A DNA MER1_type 0 189 92 1354 135 23 0 chr13 30922472 30922687 -88822211 - MLT1B LTR MaLR 0 390 171 266 128 0 0 chr13 30922696 30922743 -88822155 + MLT1B LTR MaLR 152 198 -192 588 208 16 0 chr13 30922804 30922929 -88821969 - MLT1B LTR MaLR -263 127 1 356 277 84 54 chr13 30923327 30923493 -88821405 - L1ME3A LINE L1 -8 6162 5992 1963 105 70 14 chr13 30923644 30923929 -88820969 - AluSx SINE Alu -10 302 2 345 24 0 0 chr13 30924037 30924079 -88820819 + (TG)n Simple_repeat Simple_repeat 2 43 0 2347 91 0 0 chr13 30924407 30924705 -88820193 - AluSq SINE Alu -15 298 1 3775 153 20 45 chr13 30926059 30926812 -88818086 + L1MB7 LINE L1 5443 6176 -8 577 261 65 16 chr13 30926821 30927005 -88817893 + MIR SINE MIR 28 220 -42 1930 147 6 16 chr13 30927354 30927668 -88817230 - AluJb SINE Alu -1 311 1 232 25 75 0 chr13 30931704 30931744 -88813154 + T-rich Low_complexity Low_complexity 2 44 0 28 0 0 0 chr13 30933521 30933549 -88811349 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr13 30933611 30933654 -88811244 + AT_rich Low_complexity Low_complexity 1 43 0 511 249 54 54 chr13 30934038 30934223 -88810675 - L2 LINE L2 -11 3302 3118 438 331 23 17 chr13 30935097 30935272 -88809626 - MER5A DNA MER1_type -13 176 1 635 222 211 31 chr13 30935820 30936014 -88808884 + MIR SINE MIR 12 240 -22 181 257 200 0 chr13 30936397 30936467 -88808431 - L2 LINE L2 -50 3263 3180 262 335 123 33 chr13 30936684 30936896 -88808002 - L2 LINE L2 -474 2840 2610 226 304 0 0 chr13 30937312 30937368 -88807530 + L2 LINE L2 3187 3242 -71 814 258 22 35 chr13 30937395 30937624 -88807274 - MIR SINE MIR -27 235 10 303 302 68 68 chr13 30937843 30938091 -88806807 + L1M4 LINE L1 4600 4847 -1299 320 348 129 11 chr13 30938708 30939064 -88805834 - L2 LINE L2 -456 2858 2461 2938 6 0 0 chr13 30939115 30939432 -88805466 - AluYb8 SINE Alu -1 317 1 2274 97 0 0 chr13 30939912 30940211 -88804687 - AluSg1 SINE Alu 0 309 11 352 300 81 49 chr13 30940218 30940441 -88804457 + L2 LINE L2 3027 3256 -16 209 324 56 28 chr13 30941696 30941804 -88803094 - MIR SINE MIR -80 182 72 269 235 59 0 chr13 30941985 30942053 -88802845 - MIR SINE MIR -7 255 184 354 305 66 13 chr13 30942199 30942350 -88802548 + MIR SINE MIR 53 211 -51 269 188 17 17 chr13 30942595 30942712 -88802186 + (TA)n Simple_repeat Simple_repeat 2 118 0 23 78 0 0 chr13 30942730 30942781 -88802117 + AT_rich Low_complexity Low_complexity 1 51 0 283 236 150 48 chr13 30944036 30944181 -88800717 + MIR SINE MIR 17 166 -67 2289 218 60 22 chr13 30945371 30947300 -88797598 + L1ME1 LINE L1 4125 6334 0 462 234 63 51 chr13 30947339 30947497 -88797401 - MIR SINE MIR -51 211 52 23 0 0 0 chr13 30947993 30948016 -88796882 + AT_rich Low_complexity Low_complexity 1 23 0 256 218 143 113 chr13 30948106 30948239 -88796659 + MIR SINE MIR 113 249 -13 2120 116 24 0 chr13 30949913 30950205 -88794693 + AluSp SINE Alu 1 299 -14 26 64 0 0 chr13 30950386 30950433 -88794465 + AT_rich Low_complexity Low_complexity 1 47 0 239 337 65 0 chr13 30950655 30950747 -88794151 - L2 LINE L2 -12 3301 3204 2196 108 14 0 chr13 30952221 30952517 -88792381 + AluSx SINE Alu 2 301 -11 225 0 0 0 chr13 30952536 30952561 -88792337 + (A)n Simple_repeat Simple_repeat 1 25 0 201 74 0 0 chr13 30953045 30953072 -88791826 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 28 71 0 0 chr13 30953085 30953141 -88791757 + AT_rich Low_complexity Low_complexity 1 56 0 186 333 0 17 chr13 30954639 30954699 -88790199 + MIR SINE MIR 29 87 -121 21 0 0 0 chr13 30954991 30955012 -88789886 + AT_rich Low_complexity Low_complexity 1 21 0 317 213 64 78 chr13 30956964 30957105 -88787793 + MIR SINE MIR 65 203 -59 195 299 31 15 chr13 30958671 30958753 -88786145 - MIR SINE MIR -63 145 84 2763 138 29 7 chr13 30960806 30961249 -88783649 - MLT1C LTR MaLR 0 467 15 1331 182 55 115 chr13 30961604 30962098 -88782800 - MLT2C2 LTR ERVL 0 464 1 242 243 120 35 chr13 30962541 30962656 -88782242 + MIR SINE MIR 30 151 -89 832 278 47 20 chr13 30962954 30963209 -88781689 - MIR SINE MIR 0 262 1 894 156 66 71 chr13 30963531 30963742 -88781156 - MER20 DNA MER1_type -7 212 3 1207 180 43 0 chr13 30963892 30964125 -88780773 + L1MD3 LINE L1 7726 7968 -27 252 0 0 0 chr13 30964129 30964157 -88780741 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2062 127 0 0 chr13 30964159 30964442 -88780456 - AluSx SINE Alu -29 283 1 2146 120 10 3 chr13 30964907 30965215 -88779683 - AluSx SINE Alu -2 310 1 231 104 5 134 chr13 30965628 30965830 -88779068 + (ATGTG)n Simple_repeat Simple_repeat 1 176 0 285 306 0 39 chr13 30965873 30966053 -88778845 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 701 251 29 6 chr13 30968113 30968288 -88776610 - MIR SINE MIR -30 232 54 221 275 30 8 chr13 30968509 30968640 -88776258 + (TA)n Simple_repeat Simple_repeat 2 135 0 217 338 125 6 chr13 30970469 30970629 -88774269 - MIR SINE MIR -21 241 63 1919 136 0 17 chr13 30970970 30971294 -88773604 + AluSx SINE Alu 1 319 0 203 342 83 64 chr13 30971537 30971803 -88773095 - L2 LINE L2 -4 3268 2998 335 389 15 0 chr13 30972313 30972444 -88772454 - L3 LINE CR1 -2 1575 1443 180 403 0 0 chr13 30972869 30972941 -88771957 - MIR SINE MIR -110 152 81 459 0 0 0 chr13 30973175 30973226 -88771672 + (TG)n Simple_repeat Simple_repeat 2 52 0 2402 99 0 0 chr13 30973906 30974218 -88770680 - AluSx SINE Alu 0 312 1 2372 97 0 3 chr13 30974564 30974873 -88770025 - AluSg SINE Alu -2 308 1 2050 106 68 3 chr13 30974996 30975289 -88769609 + AluSx SINE Alu 1 312 0 329 267 47 0 chr13 30975397 30975483 -88769415 + MIR SINE MIR 63 152 -110 193 361 54 39 chr13 30976202 30976332 -88768566 + L2 LINE L2 3133 3264 -8 210 37 0 0 chr13 30976346 30976373 -88768525 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2419 76 0 3 chr13 30977179 30977480 -88767418 + AluSc SINE Alu 1 300 -9 991 186 12 0 chr13 30977536 30977708 -88767190 + AluJo SINE Alu 1 174 -138 1136 160 0 17 chr13 30977712 30977893 -88767005 + FRAM SINE Alu 1 176 0 25 51 0 0 chr13 30979377 30979416 -88765482 + AT_rich Low_complexity Low_complexity 1 39 0 1038 263 64 21 chr13 30981510 30981808 -88763090 + L1ME LINE L1 2706 3037 -3109 7683 129 30 9 chr13 30981808 30983079 -88761819 - HSMAR2 DNA Mariner 0 1302 5 1038 263 64 21 chr13 30983079 30983298 -88761600 + L1ME LINE L1 3037 3245 -2901 2728 275 59 51 chr13 30983342 30985233 -88759665 + L1ME LINE L1 3510 5412 -750 2186 144 11 19 chr13 30985233 30985601 -88759297 - MLT1A1 LTR MaLR 0 365 1 2728 275 59 51 chr13 30985601 30985627 -88759271 + L1ME LINE L1 5412 5436 -726 638 219 72 57 chr13 30985611 30985890 -88759008 + L1ME3A LINE L1 5876 6158 -12 * 1346 37 0 75 chr13 30985949 30986185 -88758713 - AluY SINE Alu 0 331 110 2182 126 3 0 chr13 30986422 30986724 -88758174 - AluSx SINE Alu -9 303 1 2280 98 0 7 chr13 30987273 30987578 -88757320 - AluSx SINE Alu -9 303 1 228 122 0 0 chr13 30990251 30990292 -88754606 + (TG)n Simple_repeat Simple_repeat 2 42 0 348 317 174 22 chr13 30991146 30991370 -88753528 + MIR SINE MIR 2 259 -3 208 147 0 0 chr13 30991969 30992003 -88752895 + (TA)n Simple_repeat Simple_repeat 2 35 0 403 243 314 16 chr13 30992191 30992376 -88752522 + MIR SINE MIR 8 247 -15 284 234 81 9 chr13 30992524 30992635 -88752263 + L1ME LINE L1 5541 5659 -462 488 216 43 0 chr13 30992713 30992829 -88752069 - LTR16A LTR ERVL -6 444 324 286 229 14 0 chr13 30993306 30993376 -88751522 + MLT1F LTR MaLR 279 349 -193 2451 141 57 0 chr13 30993540 30993945 -88750953 - MSTC LTR MaLR 0 428 1 818 219 13 0 chr13 30994130 30994285 -88750613 + FRAM SINE Alu 2 158 -8 455 358 81 44 chr13 30994474 30995235 -88749663 + L2 LINE L2 2469 3271 -1 2130 118 7 7 chr13 30996345 30996641 -88748257 + AluSx SINE Alu 1 296 -16 2145 110 10 0 chr13 30997123 30997414 -88747484 + AluSx SINE Alu 1 294 -18 237 297 40 0 chr13 30997677 30997751 -88747147 - MIR SINE MIR -1 261 185 438 258 242 6 chr13 30997774 30997956 -88746942 + MIR SINE MIR 4 228 -34 500 301 15 8 chr13 30997978 30998111 -88746787 - MIR SINE MIR -106 156 23 205 362 135 9 chr13 30998153 30998382 -88746516 + L2 LINE L2 2827 3084 -188 347 341 89 15 chr13 30998463 30998598 -88746300 - L2 LINE L2 -1 3271 3127 2266 122 3 0 chr13 30998598 30998902 -88745996 + AluSx SINE Alu 1 305 -7 245 307 191 37 chr13 30999387 31000324 -88744574 - L2 LINE L2 -559 2755 1607 235 277 116 27 chr13 31000717 31000829 -88744069 - L2 LINE L2 -42 3271 3150 217 354 50 10 chr13 31001136 31001235 -88743663 + L2 LINE L2 3170 3272 0 28 0 0 0 chr13 31001392 31001420 -88743478 + AT_rich Low_complexity Low_complexity 1 28 0 717 267 27 43 chr13 31001996 31002254 -88742644 - MIR SINE MIR -5 257 4 604 178 8 0 chr13 31002894 31003012 -88741886 + L1MB3 LINE L1 6058 6176 -7 1910 127 42 3 chr13 31004865 31005149 -88739749 + AluSx SINE Alu 1 295 -17 1295 77 120 29 chr13 31008012 31008220 -88736678 - MER30 DNA MER1_type 0 230 4 184 318 47 35 chr13 31008222 31008307 -88736591 + L2 LINE L2 3187 3272 0 958 164 5 0 chr13 31008904 31009099 -88735799 + L1MA4 LINE L1 6099 6294 -6 1884 173 14 0 chr13 31009251 31009546 -88735352 - AluJb SINE Alu -13 299 1 21 36 0 0 chr13 31009570 31009598 -88735300 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 31010968 31010989 -88733909 + AT_rich Low_complexity Low_complexity 1 21 0 294 297 45 63 chr13 31011099 31011321 -88733577 - MIR SINE MIR -1 261 44 305 324 81 7 chr13 31011346 31011482 -88733416 + MIR SINE MIR 61 206 -56 228 89 71 0 chr13 31011499 31011555 -88733343 + T-rich Low_complexity Low_complexity 1 60 0 278 170 0 0 chr13 31011746 31011793 -88733105 - L2 LINE L2 -1 3312 3266 2249 107 3 0 chr13 31012075 31012373 -88732525 + AluSg SINE Alu 1 299 -11 2459 61 0 3 chr13 31012769 31013065 -88731833 - AluY SINE Alu -16 295 1 2270 34 0 4 chr13 31013153 31013416 -88731482 + AluY SINE Alu 1 262 -49 1939 166 3 0 chr13 31015181 31015489 -88729409 - AluSx SINE Alu -3 309 1 1256 223 80 136 chr13 31015519 31016090 -88728808 - L2 LINE L2 -1 3312 2700 492 163 10 20 chr13 31016090 31016188 -88728710 - AluS SINE Alu -216 97 1 1256 223 80 136 chr13 31016188 31016378 -88728520 - L2 LINE L2 -613 2700 2501 353 190 293 9 chr13 31016377 31016493 -88728405 + MIR SINE MIR 94 242 -20 * 226 259 0 0 chr13 31016505 31016559 -88728339 + (TTA)n Simple_repeat Simple_repeat 3 56 0 395 227 47 86 chr13 31016559 31016639 -88728259 - L2 LINE L2 -816 2498 2423 2165 101 0 17 chr13 31016639 31016935 -88727963 - AluSx SINE Alu -21 291 1 395 227 47 86 chr13 31016935 31016982 -88727916 - L2 LINE L2 -891 2423 2376 1520 156 25 83 chr13 31017176 31017412 -88727486 + AluJo SINE Alu 1 214 -98 2090 120 3 30 chr13 31017412 31017713 -88727185 - AluSx SINE Alu -19 293 1 1520 156 25 83 chr13 31017713 31017802 -88727096 + AluJo SINE Alu 214 307 -5 196 273 102 11 chr13 31018318 31018406 -88726492 + L2 LINE L2 3192 3287 -26 283 287 143 42 chr13 31018980 31019245 -88725653 - L2 LINE L2 -1076 2238 1947 23 33 0 0 chr13 31019837 31019867 -88725031 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 31020915 31020937 -88723961 + AT_rich Low_complexity Low_complexity 1 22 0 311 289 59 9 chr13 31020994 31021140 -88723758 - MIR SINE MIR -78 130 1 2431 70 3 0 chr13 31021428 31021726 -88723172 - AluY SINE Alu -12 299 1 212 323 0 16 chr13 31023535 31023597 -88721301 - L2 LINE L2 -5 3308 3248 21 71 0 0 chr13 31023600 31023642 -88721256 + AT_rich Low_complexity Low_complexity 1 42 0 2624 114 5 0 chr13 31023734 31024119 -88720779 - L1PA12 LINE L1 0 6168 5782 4497 81 34 0 chr13 31024117 31024760 -88720138 - L1PA13 LINE L1 -280 5883 5221 1297 258 66 10 chr13 31026097 31026489 -88718409 - MLT1J2 LTR MaLR -1 449 36 329 296 204 0 chr13 31027428 31027580 -88717318 - MIR SINE MIR 0 262 80 865 161 0 0 chr13 31027681 31027811 -88717087 + FLAM_A SINE Alu 4 133 0 2021 140 0 3 chr13 31027822 31028115 -88716783 + AluJb SINE Alu 9 300 -12 1929 143 10 3 chr13 31029018 31029311 -88715587 + AluSx SINE Alu 1 295 -17 228 35 0 0 chr13 31030014 31030043 -88714855 + (CA)n Simple_repeat Simple_repeat 2 30 0 2173 96 4 0 chr13 31032107 31032422 -88712476 - AluSc SINE Alu 0 316 1 885 144 8 0 chr13 31033561 31033693 -88711205 - FLAM_C SINE Alu 0 133 1 313 278 179 37 chr13 31033821 31033983 -88710915 - MIR SINE MIR -58 204 20 1584 194 41 3 chr13 31034965 31035284 -88709614 + L1MB4 LINE L1 5775 6105 -75 346 101 0 72 chr13 31035391 31035460 -88709438 + L1MB2 LINE L1 6108 6171 0 24 53 0 0 chr13 31036082 31036120 -88708778 + AT_rich Low_complexity Low_complexity 1 38 0 2040 131 0 0 chr13 31036200 31036507 -88708391 - AluSq SINE Alu 0 307 1 1218 259 139 48 chr13 31036666 31037327 -88707571 - L1ME4a LINE L1 -2 6119 5399 819 146 15 15 chr13 31037484 31037614 -88707284 + FLAM_C SINE Alu 2 131 -2 2337 73 14 0 chr13 31038632 31038919 -88705979 - AluSg SINE Alu -19 291 1 24 32 0 0 chr13 31038962 31038993 -88705905 + AT_rich Low_complexity Low_complexity 1 31 0 1562 161 7 36 chr13 31038996 31039270 -88705628 + AluJo SINE Alu 1 266 -46 207 195 0 0 chr13 31039271 31039312 -88705586 + (TAGA)n Simple_repeat Simple_repeat 3 43 0 374 319 30 0 chr13 31040046 31040181 -88704717 - L2 LINE L2 -238 3034 2896 282 337 99 29 chr13 31040207 31040450 -88704448 - L2 LINE L2 -512 2802 2543 25 0 0 0 chr13 31040941 31040966 -88703932 + AT_rich Low_complexity Low_complexity 1 25 0 268 255 94 101 chr13 31041787 31041936 -88702962 + L2 LINE L2 3125 3272 0 2020 87 0 0 chr13 31041959 31042213 -88702685 + L1PA7 LINE L1 5901 6154 0 522 294 165 39 chr13 31043362 31043726 -88701172 - L3 LINE CR1 -5 1572 1163 397 262 0 19 chr13 31044092 31044199 -88700699 - MLT1K LTR MaLR -162 426 322 184 154 19 96 chr13 31044441 31044493 -88700405 + L2 LINE L2 3216 3263 -9 242 306 104 0 chr13 31044874 31045008 -88699890 + L3 LINE CR1 1109 1256 -321 755 184 184 11 chr13 31045220 31045481 -88699417 - MER33 DNA MER1_type 0 324 19 23 54 0 0 chr13 31045863 31045900 -88698998 + AT_rich Low_complexity Low_complexity 1 37 0 258 32 0 0 chr13 31047598 31047629 -88697269 + (CA)n Simple_repeat Simple_repeat 2 32 0 1867 151 13 13 chr13 31049919 31050217 -88694681 + AluJb SINE Alu 1 298 -14 682 313 20 24 chr13 31050335 31050485 -88694413 + MIR SINE MIR 8 158 -104 2621 111 3 3 chr13 31050485 31050845 -88694053 + MER46B DNA MER2_type 1 235 -1 682 313 20 24 chr13 31050845 31050943 -88693955 + MIR SINE MIR 158 255 -7 2110 127 3 0 chr13 31052000 31052292 -88692606 + AluSx SINE Alu 3 295 -17 627 105 12 18 chr13 31054263 31054511 -88690387 + AluSx SINE Alu 1 300 -10 784 125 0 0 chr13 31054520 31054624 -88690274 + AluSg SINE Alu 2 105 -205 2237 82 3 7 chr13 31057397 31057688 -88687210 + AluSg1 SINE Alu 1 290 -19 30 0 0 0 chr13 31058058 31058088 -88686810 + AT_rich Low_complexity Low_complexity 1 30 0 396 336 15 0 chr13 31058709 31058846 -88686052 + MIR3 SINE MIR 54 192 -16 1926 138 0 0 chr13 31060373 31060648 -88684250 + AluSx SINE Alu 2 276 -36 206 185 0 37 chr13 31061359 31061413 -88683485 + T-rich Low_complexity Low_complexity 5 56 0 356 319 154 12 chr13 31061627 31061796 -88683102 - MER91A DNA MER1_type 0 196 4 180 0 0 0 chr13 31062157 31062177 -88682721 + (A)n Simple_repeat Simple_repeat 1 20 0 237 33 0 0 chr13 31062177 31062207 -88682691 + (TA)n Simple_repeat Simple_repeat 2 31 0 1045 117 48 0 chr13 31062360 31062505 -88682393 - AluSg/x SINE Alu -30 280 129 2230 93 3 17 chr13 31063076 31063377 -88681521 + AluSx SINE Alu 1 297 -15 2322 104 3 0 chr13 31063876 31064173 -88680725 - AluSq SINE Alu -15 298 1 363 284 158 77 chr13 31064279 31064589 -88680309 + L2 LINE L2 2937 3271 -1 376 261 17 25 chr13 31064891 31065010 -88679888 + MIR SINE MIR 44 161 -101 33 0 0 0 chr13 31065664 31065697 -88679201 + AT_rich Low_complexity Low_complexity 1 33 0 1009 206 0 0 chr13 31066179 31066344 -88678554 + FRAM SINE Alu 2 166 0 1877 101 0 45 chr13 31066388 31066674 -88678224 - AluSg SINE Alu 0 310 38 302 285 98 57 chr13 31066807 31066887 -88678011 + MIR SINE MIR 20 108 -154 2620 26 7 3 chr13 31066887 31067189 -88677709 - AluY SINE Alu -8 303 1 302 285 98 57 chr13 31067189 31067231 -88677667 + MIR SINE MIR 108 147 -115 578 135 79 0 chr13 31067551 31067640 -88677258 + MER46A DNA MER2_type 1 96 -140 * 634 116 12 1 chr13 31067630 31067736 -88677162 + Tigger4(Zombi) DNA MER2_type 130 2731 0 1028 130 76 5 chr13 31067904 31068089 -88676809 + L1MA8 LINE L1 6091 6288 -3 2632 43 10 0 chr13 31068093 31068396 -88676502 + AluY SINE Alu 1 306 -5 2443 58 0 32 chr13 31068762 31069071 -88675827 + AluY SINE Alu 1 299 -12 255 243 29 78 chr13 31070685 31070788 -88674110 - MIR3 SINE MIR -3 205 108 481 329 31 6 chr13 31070866 31071027 -88673871 + MIR SINE MIR 20 184 -78 280 247 38 35 chr13 31071050 31071240 -88673658 - MIR SINE MIR -6 256 14 410 295 147 69 chr13 31072688 31073308 -88671590 - L2 LINE L2 -2 3270 2584 181 305 253 0 chr13 31073780 31073875 -88671023 - MIR SINE MIR -118 144 26 323 291 82 18 chr13 31074878 31074988 -88669910 - MIR SINE MIR -44 218 102 2199 118 0 16 chr13 31076526 31076841 -88668057 + AluSg SINE Alu 1 310 0 386 238 161 70 chr13 31076872 31077171 -88667727 + Charlie8 DNA MER1_type 126 451 -1966 405 327 101 18 chr13 31077837 31078054 -88666844 - L3 LINE CR1 -715 862 628 2259 71 7 10 chr13 31080131 31080425 -88664473 + AluY SINE Alu 1 293 -18 2319 85 0 23 chr13 31080520 31080826 -88664072 + AluSg SINE Alu 3 301 -9 21 36 0 0 chr13 31082916 31082944 -88661954 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr13 31083833 31083869 -88661029 + AT_rich Low_complexity Low_complexity 1 36 0 224 356 134 19 chr13 31084025 31084241 -88660657 - L2 LINE L2 -224 3048 2808 186 401 92 4 chr13 31084262 31084489 -88660409 - L2 LINE L2 -607 2707 2461 2105 123 36 3 chr13 31085035 31085336 -88659562 - AluSp SINE Alu -2 311 1 4502 115 65 56 chr13 31085336 31085636 -88659262 + Tigger1 DNA MER2_type 1552 1848 -570 2056 125 0 3 chr13 31085636 31085924 -88658974 - AluSx SINE Alu -25 287 1 4502 115 65 56 chr13 31085924 31086153 -88658745 + Tigger1 DNA MER2_type 1848 2073 -345 2043 118 4 4 chr13 31086153 31086474 -88658424 + AluSc SINE Alu 1 321 0 4502 115 65 56 chr13 31086474 31086801 -88658097 + Tigger1 DNA MER2_type 2073 2418 0 703 285 66 9 chr13 31087494 31087729 -88657169 - MIR SINE MIR -11 251 5 574 164 16 23 chr13 31088630 31088758 -88656140 + L1MB8 LINE L1 6051 6177 -1 216 158 0 0 chr13 31089529 31089567 -88655331 + T-rich Low_complexity Low_complexity 3 40 0 1678 254 134 66 chr13 31092085 31092653 -88652245 - L2 LINE L2 0 3313 2785 583 109 89 0 chr13 31092653 31092754 -88652144 + L1MB4 LINE L1 6070 6179 -1 1678 254 134 66 chr13 31092754 31093184 -88651714 - L2 LINE L2 -528 2785 2234 409 342 70 0 chr13 31093275 31093433 -88651465 + MER5B DNA MER1_type 5 173 -5 315 267 22 11 chr13 31094077 31094167 -88650731 + MER5B DNA MER1_type 1 91 -87 966 246 123 148 chr13 31094218 31095874 -88649024 + L2 LINE L2 582 2191 -1123 491 112 0 0 chr13 31095874 31095963 -88648935 - L1PB1 LINE L1 0 6151 6063 966 246 123 148 chr13 31095963 31096130 -88648768 + L2 LINE L2 2191 2361 -953 630 268 83 31 chr13 31096159 31096387 -88648511 - MIR SINE MIR 0 262 23 257 264 78 47 chr13 31096471 31096600 -88648298 + L2 LINE L2 2513 2645 -669 222 242 345 6 chr13 31096760 31096925 -88647973 + L2 LINE L2 2926 3146 -167 290 250 53 0 chr13 31097006 31097082 -88647816 + MIR SINE MIR 108 187 -75 409 176 9 120 chr13 31098130 31098238 -88646660 + MER20 DNA MER1_type 6 101 -118 2214 113 0 7 chr13 31098454 31098755 -88646143 - AluSx SINE Alu -13 299 1 2498 63 0 0 chr13 31098870 31099170 -88645728 - AluY SINE Alu -11 300 1 411 301 0 0 chr13 31099185 31099288 -88645610 - MIR SINE MIR -2 260 158 503 286 103 27 chr13 31099584 31100293 -88644605 + L1MEd LINE L1 764 1586 -4724 2359 107 3 0 chr13 31100293 31100602 -88644296 + AluSx SINE Alu 1 310 -2 503 286 103 27 chr13 31100602 31100688 -88644210 + L1MEd LINE L1 1586 1664 -4646 2209 125 10 0 chr13 31100870 31101174 -88643724 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr13 31101442 31101463 -88643435 + AT_rich Low_complexity Low_complexity 1 21 0 2221 105 0 0 chr13 31101463 31101748 -88643150 - AluSg SINE Alu -25 285 1 295 301 169 2 chr13 31101875 31102042 -88642856 + MIR SINE MIR 44 236 -26 2187 117 0 3 chr13 31102641 31102940 -88641958 - AluSq SINE Alu -15 298 1 189 369 18 27 chr13 31104553 31104664 -88640234 + L2 LINE L2 2636 2745 -569 3574 156 35 16 chr13 31105969 31106242 -88638656 + L1MA9 LINE L1 5556 5822 -490 2092 105 0 14 chr13 31106242 31106552 -88638346 + AluSx SINE Alu 1 306 0 3574 156 35 16 chr13 31106552 31106987 -88637911 + L1MA9 LINE L1 5822 6279 -33 2251 105 0 19 chr13 31106998 31107313 -88637585 - AluSx SINE Alu -3 309 1 314 324 221 5 chr13 31107626 31107830 -88637068 + MIR SINE MIR 15 262 0 2086 100 3 7 chr13 31108209 31108509 -88636389 + AluSp SINE Alu 1 299 -14 469 240 104 0 chr13 31109778 31109932 -88634966 - MER3 DNA MER1_type -21 188 19 1185 159 189 27 chr13 31110436 31110556 -88634342 - Charlie1a DNA MER1_type -1306 1455 1356 2219 111 0 3 chr13 31110556 31110862 -88634036 + AluSx SINE Alu 1 305 -7 1185 159 189 27 chr13 31110862 31111144 -88633754 - Charlie1a DNA MER1_type -1405 1356 988 2471 209 108 20 chr13 31111179 31111914 -88632984 - Charlie1a DNA MER1_type -590 865 67 2103 117 10 3 chr13 31112080 31112378 -88632520 - AluSg SINE Alu -10 300 1 25 51 0 0 chr13 31112433 31112472 -88632426 + AT_rich Low_complexity Low_complexity 1 39 0 429 332 91 5 chr13 31112976 31113163 -88631735 + MIR SINE MIR 2 204 -58 287 280 178 49 chr13 31113462 31113766 -88631132 - L2 LINE L2 -95 3218 2876 226 345 64 55 chr13 31113899 31114249 -88630649 + L2 LINE L2 2716 3069 -203 210 139 139 0 chr13 31114233 31114276 -88630622 - L2 LINE L2 -97 3216 3168 * 291 361 41 8 chr13 31114483 31114632 -88630266 + MER5B DNA MER1_type 7 153 -25 232 392 29 0 chr13 31114628 31114730 -88630168 - L2 LINE L2 -648 2666 2562 * 284 304 125 9 chr13 31114858 31114970 -88629928 - L2 LINE L2 -2 3270 3146 22 0 0 0 chr13 31115386 31115408 -88629490 + AT_rich Low_complexity Low_complexity 1 22 0 1778 147 26 3 chr13 31115610 31115923 -88628975 - L1MC2 LINE L1 -158 6186 5867 2639 104 106 2 chr13 31115923 31116356 -88628542 - MER9 LTR ERVK 0 511 34 2503 125 53 9 chr13 31116362 31116782 -88628116 - L1MC2 LINE L1 -471 5873 5432 2490 64 0 13 chr13 31116782 31117095 -88627803 - AluY SINE Alu -2 309 1 2503 125 53 9 chr13 31117095 31117106 -88627792 - L1MC2 LINE L1 -912 5432 5423 582 345 147 23 chr13 31117680 31118068 -88626830 - L2 LINE L2 0 3272 2837 1217 199 107 11 chr13 31118268 31118549 -88626349 - AluJo SINE Alu -2 310 3 181 250 67 17 chr13 31118617 31118677 -88626221 - L3b LINE CR1 -94 1489 1427 22 0 0 0 chr13 31118839 31118861 -88626037 + AT_rich Low_complexity Low_complexity 1 22 0 2512 56 13 0 chr13 31119180 31119482 -88625416 - AluY SINE Alu -5 306 1 1755 150 4 0 chr13 31120808 31121074 -88623824 + AluSq SINE Alu 1 267 -46 1936 93 4 12 chr13 31121074 31121330 -88623568 + AluY SINE Alu 41 296 -15 1234 153 4 75 chr13 31121411 31121665 -88623233 - AluJb SINE Alu -13 299 64 1815 135 4 0 chr13 31121875 31122141 -88622757 - AluSq SINE Alu -2 311 45 585 146 201 14 chr13 31122291 31122435 -88622463 + MER53 DNA DNA 10 180 -9 180 0 0 0 chr13 31122519 31122539 -88622359 + (TG)n Simple_repeat Simple_repeat 2 21 0 1300 84 20 141 chr13 31123347 31123644 -88621254 - Tigger7 DNA MER2_type -2 2489 2229 * 4419 128 42 75 chr13 31123643 31124510 -88620388 - Tigger7 DNA MER2_type -1648 839 2 1185 146 118 9 chr13 31124710 31124922 -88619976 - AluSg/x SINE Alu 0 312 78 898 181 0 0 chr13 31125079 31125228 -88619670 + AluJb SINE Alu 152 300 -12 208 207 11 58 chr13 31125445 31125532 -88619366 + (TATG)n Simple_repeat Simple_repeat 3 85 0 4695 72 3 6 chr13 31127261 31127885 -88617013 - L1PA10 LINE L1 -11 6157 5536 1690 210 7 0 chr13 31128039 31128344 -88616554 + AluJo SINE Alu 1 307 -5 2291 113 0 3 chr13 31128707 31129009 -88615889 + AluSx SINE Alu 1 301 -11 1657 186 14 3 chr13 31129526 31129822 -88615076 - AluJo SINE Alu -9 303 5 2330 4 0 8 chr13 31135270 31135528 -88609370 + AluYa5 SINE Alu 41 296 -15 268 234 240 82 chr13 31135534 31135636 -88609262 + MIR SINE MIR 59 144 -118 2225 100 10 3 chr13 31135636 31135935 -88608963 + AluSx SINE Alu 1 301 -11 268 234 240 82 chr13 31135935 31136003 -88608895 + MIR SINE MIR 144 256 -6 1891 115 44 90 chr13 31136136 31136410 -88608488 - MER7A DNA MER2_type -2692 346 94 2312 97 0 10 chr13 31136410 31136709 -88608189 + AluSx SINE Alu 1 296 -16 1891 115 44 90 chr13 31136709 31136799 -88608099 - MER7A DNA MER2_type -2944 94 1 441 123 92 0 chr13 31138355 31138420 -88606478 - AluS SINE Alu -236 76 6 600 140 9 0 chr13 31138426 31138540 -88606358 - Charlie1a DNA MER1_type -26 1429 1315 1942 184 58 9 chr13 31138542 31138977 -88605921 - Charlie1a DNA MER1_type -617 838 383 329 287 59 22 chr13 31138980 31139116 -88605782 - Charlie1a DNA MER1_type -1314 141 1 1908 115 77 18 chr13 31139229 31139567 -88605331 - MER46B DNA MER2_type -1 235 3 722 235 195 46 chr13 31139588 31140090 -88604808 - L1MC4a LINE L1 -1487 6321 5745 21 0 0 0 chr13 31140657 31140678 -88604220 + AT_rich Low_complexity Low_complexity 1 21 0 244 324 29 36 chr13 31140682 31140821 -88604077 - MIR SINE MIR -39 223 86 2913 257 164 38 chr13 31140829 31142565 -88602333 + HAL1 LINE L1 12 1966 -541 2134 130 20 0 chr13 31142587 31142886 -88602012 + AluSx SINE Alu 1 305 -7 900 256 146 35 chr13 31142886 31143200 -88601698 + HAL1 LINE L1 15 293 -2214 1895 129 71 0 chr13 31143200 31143480 -88601418 + AluSx SINE Alu 2 301 -11 900 256 146 35 chr13 31143480 31143715 -88601183 + HAL1 LINE L1 293 625 -1882 522 262 63 23 chr13 31143741 31143962 -88600936 + HAL1 LINE L1 743 972 -1535 297 245 142 75 chr13 31143964 31144115 -88600783 + HAL1 LINE L1 1945 2084 -423 2456 73 0 13 chr13 31144115 31144430 -88600468 + AluY SINE Alu 1 311 0 297 245 142 75 chr13 31144430 31144506 -88600392 + HAL1 LINE L1 2084 2153 -354 4835 102 21 0 chr13 31144506 31145180 -88599718 + LTR12 LTR ERV1 1 688 0 297 245 142 75 chr13 31145180 31145367 -88599531 + HAL1 LINE L1 2153 2388 -119 2140 116 0 0 chr13 31145432 31145748 -88599150 - AluY SINE Alu 0 311 1 488 279 145 11 chr13 31146694 31146963 -88597935 + L2 LINE L2 1552 1856 -1458 855 279 39 23 chr13 31146970 31147228 -88597670 + L2 LINE L2 2630 2891 -423 351 230 222 16 chr13 31147242 31147368 -88597530 + L2 LINE L2 3161 3312 -1 205 323 211 26 chr13 31147454 31148256 -88596642 - L2 LINE L2 -923 2391 1442 2267 82 20 7 chr13 31149228 31149357 -88595541 + AluSq SINE Alu 1 127 -186 225 0 0 0 chr13 31149357 31149382 -88595516 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2267 82 20 7 chr13 31149382 31149546 -88595352 + AluSq SINE Alu 127 298 -15 2171 81 0 84 chr13 31149696 31150018 -88594880 - AluSp SINE Alu -18 295 1 969 246 20 36 chr13 31150689 31150937 -88593961 - MIR SINE MIR -2 260 17 2354 99 0 0 chr13 31151842 31152146 -88592752 + AluSq SINE Alu 1 304 -9 1001 114 0 7 chr13 31152158 31152298 -88592600 + AluJb SINE Alu 1 139 -173 2109 125 0 3 chr13 31152299 31152588 -88592310 + AluSx SINE Alu 1 288 -24 2336 111 7 0 chr13 31152588 31152895 -88592003 + AluSx SINE Alu 1 309 -3 3587 263 159 20 chr13 31153480 31154018 -88590880 - L2 LINE L2 -8 3305 2843 2183 104 7 3 chr13 31154018 31154307 -88590591 - AluSx SINE Alu -22 290 1 3587 263 159 20 chr13 31154307 31155514 -88589384 - L2 LINE L2 -470 2843 1314 24 32 0 0 chr13 31155575 31155606 -88589292 + AT_rich Low_complexity Low_complexity 1 31 0 1898 155 7 23 chr13 31155669 31155979 -88588919 - AluJo SINE Alu -6 306 2 1192 264 193 29 chr13 31157888 31158728 -88586170 - HAL1 LINE L1 -1 2506 1529 295 161 0 0 chr13 31158766 31158822 -88586076 - Alu SINE Alu 0 302 247 754 187 0 0 chr13 31158827 31158950 -88585948 - FLAM_C SINE Alu -20 123 1 2304 108 10 0 chr13 31159019 31159326 -88585572 - AluSq SINE Alu -3 310 1 222 128 0 0 chr13 31159370 31159409 -88585489 + (T)n Simple_repeat Simple_repeat 1 39 0 648 221 30 30 chr13 31159441 31159676 -88585222 - HAL1 LINE L1 -1173 1334 1100 1061 258 112 46 chr13 31160037 31160188 -88584710 + L1MC5 LINE L1 6456 6596 -1365 2195 131 0 0 chr13 31160188 31160485 -88584413 + AluSx SINE Alu 1 297 -15 1061 258 112 46 chr13 31160485 31160804 -88584094 + L1MC5 LINE L1 6596 6893 -1068 2122 116 0 7 chr13 31160804 31161097 -88583801 + AluSx SINE Alu 6 296 -16 1061 258 112 46 chr13 31161097 31161170 -88583728 + L1MC5 LINE L1 6893 6960 -1001 1586 179 29 38 chr13 31161170 31161483 -88583415 + AluJb SINE Alu 3 312 0 1061 258 112 46 chr13 31161483 31161622 -88583276 + L1MC5 LINE L1 6960 7187 -774 2324 87 0 7 chr13 31161645 31161943 -88582955 - AluSg SINE Alu -1 309 14 381 230 115 71 chr13 31162010 31162236 -88582662 - HAL1 LINE L1 -1433 1074 839 2363 77 3 10 chr13 31162431 31162743 -88582155 - AluSg SINE Alu 0 310 1 524 302 18 6 chr13 31162894 31163063 -88581835 - HAL1 LINE L1 -2066 441 271 520 238 72 66 chr13 31163108 31163208 -88581690 + MIR SINE MIR 78 181 -81 2124 106 0 0 chr13 31163208 31163509 -88581389 - AluSx SINE Alu -11 301 1 520 238 72 66 chr13 31163509 31163589 -88581309 + MIR SINE MIR 181 259 -3 301 243 37 65 chr13 31163606 31163713 -88581185 - HAL1 LINE L1 -2302 205 102 1918 124 57 0 chr13 31164246 31164528 -88580370 - AluSq SINE Alu -15 298 1 6349 119 29 22 chr13 31165352 31165957 -88578941 - Tigger1 DNA MER2_type 0 2418 1818 2051 131 56 14 chr13 31165957 31166317 -88578581 - THE1C LTR MaLR 0 375 1 8389 137 27 75 chr13 31166317 31166632 -88578266 - THE1C-int LTR MaLR 0 1580 1251 1681 117 4 4 chr13 31166632 31166863 -88578035 - AluSg SINE Alu -16 294 64 2205 139 0 0 chr13 31166863 31167171 -88577727 + AluSg SINE Alu 2 310 0 8389 137 27 75 chr13 31167171 31168511 -88576387 - THE1C-int LTR MaLR -327 1253 4 1964 140 59 14 chr13 31168514 31168871 -88576027 - THE1C LTR MaLR 0 375 3 6349 119 29 22 chr13 31168871 31169195 -88575703 - Tigger1 DNA MER2_type -601 1817 1474 2428 74 3 0 chr13 31169195 31169494 -88575404 - AluSp SINE Alu -12 301 2 6349 119 29 22 chr13 31169494 31169629 -88575269 - Tigger1 DNA MER2_type -944 1474 1341 716 169 32 45 chr13 31169623 31169777 -88575121 - Tigger1 DNA MER2_type -2265 153 2 * 2063 139 7 3 chr13 31169876 31170178 -88574720 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr13 31170638 31170661 -88574237 + AT_rich Low_complexity Low_complexity 1 23 0 2257 98 7 0 chr13 31170945 31171242 -88573656 + AluSq SINE Alu 1 299 -14 210 321 191 24 chr13 31171818 31171986 -88572912 + MIR3 SINE MIR 10 205 -3 183 129 0 0 chr13 31172306 31172337 -88572561 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 617 265 33 38 chr13 31172473 31172684 -88572214 + MIR SINE MIR 34 243 -19 2340 105 0 0 chr13 31174169 31174474 -88570424 - AluY SINE Alu -6 305 1 5263 244 115 72 chr13 31174798 31175754 -88569144 - L2 LINE L2 -1 3312 2399 1169 53 0 0 chr13 31175754 31175886 -88569012 - AluY SINE Alu -179 132 1 5263 244 115 72 chr13 31175886 31176714 -88568184 - L2 LINE L2 -914 2399 1609 2211 78 38 0 chr13 31176714 31177007 -88567891 + AluY SINE Alu 1 304 -7 5263 244 115 72 chr13 31177007 31178087 -88566811 - L2 LINE L2 -1704 1609 154 247 91 0 0 chr13 31178106 31178150 -88566748 - L1MA1 LINE L1 0 6302 6259 1824 126 0 0 chr13 31179804 31180058 -88564840 + AluSx SINE Alu 44 297 -15 1788 169 36 3 chr13 31180466 31180786 -88564112 - MLT1C LTR MaLR 0 654 126 4087 175 49 54 chr13 31180786 31181745 -88563153 + LTR13 LTR ERVK 1 954 0 1788 169 36 3 chr13 31181745 31181759 -88563139 - MLT1C LTR MaLR -528 126 114 1863 158 3 3 chr13 31181759 31182056 -88562842 - AluSx SINE Alu -14 298 2 1428 118 102 12 chr13 31182060 31182305 -88562593 + MER47A DNA MER2_type 30 296 -70 2454 238 51 41 chr13 31182371 31183304 -88561594 - L1MDa LINE L1 -3830 2710 1769 320 163 0 0 chr13 31183312 31183361 -88561537 + MER47A DNA MER2_type 307 355 -11 242 234 0 0 chr13 31183365 31183412 -88561486 - MLT1C LTR MaLR -374 93 47 182 322 35 23 chr13 31183788 31183875 -88561023 + L2 LINE L2 2699 2786 -528 672 151 72 50 chr13 31183950 31184089 -88560809 + FLAM_C SINE Alu 2 143 0 490 286 118 0 chr13 31184504 31184682 -88560216 - MIR SINE MIR -61 201 3 753 261 207 14 chr13 31184859 31185212 -88559686 - LTR16A LTR ERVL -14 436 16 580 124 10 15 chr13 31186044 31186246 -88558652 + AluSx SINE Alu 2 299 -3 3845 224 82 39 chr13 31186253 31187398 -88557500 - L1MC4a LINE L1 0 7808 6615 2217 224 58 61 chr13 31187395 31188150 -88556748 - L1MC4a LINE L1 -1594 6214 5462 * 628 248 164 9 chr13 31189061 31189287 -88555611 - MIR SINE MIR 0 262 2 26 0 0 0 chr13 31189393 31189419 -88555479 + AT_rich Low_complexity Low_complexity 1 26 0 2190 125 0 6 chr13 31189601 31189912 -88554986 - AluSx SINE Alu 0 312 4 389 218 13 0 chr13 31190013 31190091 -88554807 + MER116 DNA Mariner 1 79 -1 707 163 70 52 chr13 31191082 31191139 -88553759 - MIR SINE MIR -48 214 159 1186 176 10 19 chr13 31191139 31191344 -88553554 - MER6B DNA MER2_type -3 207 5 707 163 70 52 chr13 31191344 31191458 -88553440 - MIR SINE MIR -103 159 40 937 134 0 8 chr13 31192660 31192794 -88552104 + FLAM_C SINE Alu 1 133 0 2192 120 0 3 chr13 31193428 31193727 -88551171 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 31194235 31194256 -88550642 + AT_rich Low_complexity Low_complexity 1 21 0 495 272 203 20 chr13 31195842 31196088 -88548810 - MARNA DNA Mariner -263 323 33 239 318 162 13 chr13 31197240 31197394 -88547504 - MER5A DNA MER1_type -7 182 6 2065 135 0 0 chr13 31198869 31199172 -88545726 + AluSx SINE Alu 1 303 -9 2553 48 3 26 chr13 31199530 31199843 -88545055 - AluY SINE Alu -5 306 1 2311 93 3 10 chr13 31200091 31200404 -88544494 - AluSq SINE Alu -2 311 1 294 322 128 13 chr13 31202952 31203101 -88541797 + L3 LINE CR1 353 518 -1059 226 364 127 9 chr13 31203135 31203245 -88541653 - L2 LINE L2 -11 3302 3180 558 313 28 36 chr13 31203505 31203754 -88541144 + L3 LINE CR1 1055 1301 -276 419 265 175 23 chr13 31203754 31204116 -88540782 - MLT1H LTR MaLR -90 459 1 302 267 114 9 chr13 31205506 31205611 -88539287 - L1MC5 LINE L1 -36 7925 7810 293 286 0 0 chr13 31205703 31205794 -88539104 - L1MC5 LINE L1 -396 7565 7475 534 281 67 30 chr13 31205818 31205976 -88538922 - L1MC4 LINE L1 0 8042 7868 2134 106 3 47 chr13 31205976 31206297 -88538601 + AluSx SINE Alu 1 307 -5 534 281 67 30 chr13 31206297 31206405 -88538493 - L1MC4 LINE L1 -174 7868 7766 23 0 0 0 chr13 31206523 31206546 -88538352 + AT_rich Low_complexity Low_complexity 1 23 0 2163 106 0 7 chr13 31206565 31206857 -88538041 - AluSx SINE Alu -22 290 1 26 0 0 0 chr13 31206867 31206893 -88538005 + AT_rich Low_complexity Low_complexity 1 26 0 737 278 66 28 chr13 31207002 31207322 -88537576 - L1MC4 LINE L1 -495 7547 7216 312 227 86 121 chr13 31207366 31207508 -88537390 - L1ME4a LINE L1 -89 6032 5887 2456 86 0 0 chr13 31207508 31207811 -88537087 - AluSx SINE Alu -9 303 1 312 227 86 121 chr13 31207811 31208007 -88536891 - L1ME4a LINE L1 -234 5887 5706 349 366 22 22 chr13 31208286 31208469 -88536429 - MIR SINE MIR -33 229 47 287 320 33 16 chr13 31208480 31208602 -88536296 - HAL1b LINE L1 -750 598 475 385 276 73 73 chr13 31208623 31208898 -88536000 - MLT1J LTR MaLR -1 510 236 22 0 0 0 chr13 31209016 31209038 -88535860 + AT_rich Low_complexity Low_complexity 1 22 0 578 281 29 29 chr13 31209498 31209708 -88535190 + L2 LINE L2 3104 3313 0 527 254 216 38 chr13 31209810 31210023 -88534875 - MIR SINE MIR -4 258 8 239 226 135 23 chr13 31210035 31210168 -88534730 - L1ME LINE L1 -375 5787 5640 592 252 7 7 chr13 31210255 31210390 -88534508 + L2 LINE L2 3179 3313 0 2227 90 0 0 chr13 31210465 31210744 -88534154 - AluSg SINE Alu -31 279 1 2841 67 22 3 chr13 31210845 31211201 -88533697 + THE1C LTR MaLR 3 365 -10 11437 98 41 7 chr13 31211201 31212727 -88532171 + THE1C-int LTR MaLR 1 1578 -2 2555 71 22 41 chr13 31212727 31212867 -88532031 + THE1C LTR MaLR 19 160 -215 2099 118 13 35 chr13 31212867 31213180 -88531718 - AluSx SINE Alu -6 306 1 2555 71 22 41 chr13 31213180 31213403 -88531495 + THE1C LTR MaLR 160 375 0 2417 87 0 6 chr13 31214293 31214604 -88530294 - AluSq SINE Alu -4 309 1 364 233 107 79 chr13 31214729 31214944 -88529954 - L2 LINE L2 -4 3309 3089 261 310 181 0 chr13 31215168 31215284 -88529614 + MIR SINE MIR 126 262 0 1665 170 24 40 chr13 31217172 31217548 -88527350 + L1MB4 LINE L1 5777 6146 -34 431 57 0 0 chr13 31218181 31218234 -88526664 - Alu SINE Alu -260 58 6 227 237 34 0 chr13 31218238 31218297 -88526601 - L1ME LINE L1 -454 5667 5607 392 190 110 0 chr13 31218646 31218746 -88526152 - L1ME4a LINE L1 -6 6115 6005 505 263 108 17 chr13 31219176 31219350 -88525548 - MIR SINE MIR -62 146 8 406 319 18 35 chr13 31219387 31219556 -88525342 - MIR3 SINE MIR -23 185 20 312 301 11 0 chr13 31219645 31219738 -88525160 - MIR3 SINE MIR -1 207 114 226 273 260 0 chr13 31220346 31220423 -88524475 - L2 LINE L2 -20 3293 3197 189 74 0 0 chr13 31221362 31221389 -88523509 + (CTGGGG)n Simple_repeat Simple_repeat 6 32 0 23 0 0 0 chr13 31221597 31221620 -88523278 + GC_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr13 31221620 31221645 -88523253 + (CTG)n Simple_repeat Simple_repeat 1 25 0 1268 169 115 17 chr13 31223131 31223214 -88521684 + MER33 DNA MER1_type 1 74 -2511 1931 158 0 3 chr13 31223214 31223517 -88521381 + AluJo SINE Alu 1 302 -10 1268 169 115 17 chr13 31223517 31223728 -88521170 + MER33 DNA MER1_type 74 324 0 238 325 78 12 chr13 31223931 31224097 -88520801 - L2 LINE L2 -1148 2166 1990 210 273 83 58 chr13 31224226 31224347 -88520551 + L2 LINE L2 3169 3292 -21 2345 78 3 0 chr13 31224421 31224736 -88520162 + AluSp SINE Alu 1 316 0 821 215 58 50 chr13 31225411 31225653 -88519245 - MER46C DNA MER2_type 0 338 95 1726 108 0 4 chr13 31225664 31225896 -88519002 - AluJb SINE Alu -81 231 1 835 117 105 146 chr13 31225935 31226182 -88518716 + L1MB3 LINE L1 5942 6178 -5 303 226 0 0 chr13 31226193 31226255 -88518643 - MER46C DNA MER2_type -274 64 3 2080 98 47 17 chr13 31226959 31227255 -88517643 + AluSx SINE Alu 1 305 -7 2239 101 9 22 chr13 31227255 31227572 -88517326 + AluSq SINE Alu 1 313 0 2062 110 3 67 chr13 31227678 31228006 -88516892 - AluSx SINE Alu -5 307 1 277 308 75 25 chr13 31228067 31228187 -88516711 - MIR SINE MIR -66 142 17 342 259 121 26 chr13 31228757 31228851 -88516047 + L2 LINE L2 3187 3295 -18 2217 110 0 0 chr13 31228851 31229142 -88515756 - AluSx SINE Alu -21 291 1 342 259 121 26 chr13 31229142 31229163 -88515735 + L2 LINE L2 3295 3313 0 28 29 0 0 chr13 31230018 31230053 -88514845 + AT_rich Low_complexity Low_complexity 1 35 0 2200 114 13 0 chr13 31230125 31230448 -88514450 + AluSx SINE Alu 10 336 0 2121 116 0 7 chr13 31230466 31230796 -88514102 - AluSx SINE Alu 0 328 1 1273 106 30 43 chr13 31231609 31231844 -88513054 - L1MA6 LINE L1 -7 6293 6062 1251 91 5 0 chr13 31231846 31232032 -88512866 + L1MA6 LINE L1 5791 5977 -323 1227 119 0 0 chr13 31232066 31232234 -88512664 + AluSp SINE Alu 137 304 -9 186 43 0 0 chr13 31232235 31232258 -88512640 + (CA)n Simple_repeat Simple_repeat 2 24 0 2226 105 0 40 chr13 31233345 31233668 -88511230 + AluSg SINE Alu 1 310 0 2171 101 21 0 chr13 31234089 31234375 -88510523 - AluSx SINE Alu -20 292 1 2100 125 0 16 chr13 31234464 31234767 -88510131 - AluSx SINE Alu -14 298 1 2321 88 0 10 chr13 31235019 31235354 -88509544 + AluSq SINE Alu 6 313 0 2160 38 27 0 chr13 31235366 31235493 -88509405 + AluY SINE Alu 1 123 -188 333 0 0 0 chr13 31235493 31235530 -88509368 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2160 38 27 0 chr13 31235530 31235665 -88509233 + AluY SINE Alu 123 270 -41 2150 117 7 7 chr13 31237857 31238166 -88506732 - AluSq SINE Alu -4 309 1 1853 139 3 55 chr13 31238342 31238567 -88506331 - MER7A DNA MER2_type -2712 326 91 1887 136 0 7 chr13 31238567 31238846 -88506052 + AluSx SINE Alu 1 277 -35 270 0 0 0 chr13 31238851 31238881 -88506017 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1853 139 3 55 chr13 31238881 31238994 -88505904 - MER7A DNA MER2_type -2951 87 2 392 215 102 96 chr13 31239188 31239365 -88505533 + MER20B DNA MER1_type 2 179 -604 716 261 84 31 chr13 31240393 31240619 -88504279 - MIR SINE MIR -23 239 2 621 299 33 9 chr13 31241017 31241231 -88503667 - L2 LINE L2 -745 2569 2351 282 282 0 14 chr13 31243248 31243319 -88501579 + MIR SINE MIR 193 262 0 375 275 153 14 chr13 31243550 31243837 -88501061 + L1M4 LINE L1 2518 2844 -3302 21 0 0 0 chr13 31243904 31243925 -88500973 + AT_rich Low_complexity Low_complexity 1 21 0 2471 64 0 0 chr13 31243929 31244224 -88500674 - AluY SINE Alu -16 295 1 1120 142 12 0 chr13 31244224 31244393 -88500505 - AluJb SINE Alu -6 306 136 195 115 77 0 chr13 31244395 31244447 -88500451 + CT-rich Low_complexity Low_complexity 5 60 0 276 30 0 0 chr13 31244470 31244503 -88500395 + (TC)n Simple_repeat Simple_repeat 2 34 0 726 134 18 0 chr13 31244503 31244615 -88500283 - AluJb SINE Alu -198 114 1 347 326 53 8 chr13 31244618 31244750 -88500148 + L1M4 LINE L1 2983 3120 -3026 734 184 0 37 chr13 31244751 31244887 -88500011 + FLAM_C SINE Alu 2 132 -1 457 242 91 18 chr13 31244929 31245094 -88499804 + L1M4 LINE L1 3219 3395 -2751 1458 158 83 32 chr13 31245149 31245427 -88499471 - AluJo SINE Alu -20 292 1 690 267 60 87 chr13 31245427 31245643 -88499255 + L1M4 LINE L1 3410 3630 -2516 2368 89 3 0 chr13 31245643 31245947 -88498951 - AluSp SINE Alu -8 305 1 690 267 60 87 chr13 31245947 31246463 -88498435 + L1M4 LINE L1 3630 4122 -2024 1955 127 14 7 chr13 31246563 31246855 -88498043 + AluSx SINE Alu 1 294 -18 3912 227 69 37 chr13 31246867 31247064 -88497834 + L1M4 LINE L1 2 191 -6351 904 202 12 17 chr13 31247064 31247237 -88497661 - FAM SINE Alu -3 172 1 3912 227 69 37 chr13 31247237 31248295 -88496603 + L1M4 LINE L1 191 1298 -5244 * 13599 166 30 45 chr13 31248294 31250441 -88494457 + L1MA4A LINE L1 1 2178 -4827 1990 148 0 10 chr13 31250441 31250746 -88494152 + AluSx SINE Alu 2 303 -9 210 105 0 0 chr13 31250753 31250791 -88494107 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 13599 166 30 45 chr13 31250791 31251621 -88493277 + L1MA4A LINE L1 2184 3025 -3980 2230 81 0 7 chr13 31251621 31251951 -88492947 - AluY SINE Alu 0 328 1 13599 166 30 45 chr13 31251951 31255202 -88489696 + L1MA4A LINE L1 3025 6130 -875 1880 154 3 3 chr13 31255202 31255488 -88489410 - AluJo SINE Alu -26 286 1 13599 166 30 45 chr13 31255488 31256331 -88488567 + L1MA4A LINE L1 6130 6984 -21 1936 128 3 51 chr13 31256331 31256644 -88488254 + AluSg SINE Alu 1 298 -12 923 196 28 46 chr13 31256663 31256948 -88487950 + L1M4 LINE L1 1264 1543 -4999 2348 93 0 0 chr13 31256965 31257265 -88487633 + AluSx SINE Alu 1 300 -12 1160 222 161 49 chr13 31257270 31257886 -88487012 + L1M4 LINE L1 1760 2444 -4202 349 270 70 42 chr13 31258098 31258313 -88486585 + LTR33A LTR ERVL 299 519 -4 568 299 27 35 chr13 31258315 31258545 -88486353 + L1ME3 LINE L1 5263 5508 -656 2111 135 0 0 chr13 31258545 31258848 -88486050 - AluSg SINE Alu -7 303 1 568 299 27 35 chr13 31258848 31258984 -88485914 + L1ME3 LINE L1 5508 5644 -520 328 284 0 47 chr13 31259034 31259182 -88485716 + MER112 DNA MER1_type 2 142 -118 2235 125 0 0 chr13 31259231 31259535 -88485363 - AluSg SINE Alu -6 304 1 357 253 0 0 chr13 31259574 31259657 -88485241 + MER112 DNA MER1_type 171 253 -7 566 259 49 41 chr13 31259689 31259868 -88485030 + L1ME3 LINE L1 5707 5890 -272 1716 143 111 7 chr13 31259868 31260147 -88484751 + AluSg SINE Alu 1 308 -2 566 259 49 41 chr13 31260147 31260210 -88484688 + L1ME3 LINE L1 5890 5951 -211 305 310 216 0 chr13 31260482 31260653 -88484245 + L3 LINE CR1 320 527 -1050 348 187 53 0 chr13 31260654 31260729 -88484169 - MER116 DNA Mariner 0 80 2 2143 104 0 63 chr13 31260845 31261161 -88483737 - AluSx SINE Alu -16 296 1 2070 138 0 3 chr13 31261290 31261594 -88483304 + AluSx SINE Alu 1 303 -9 215 349 111 24 chr13 31261606 31261947 -88482951 - L2 LINE L2 -962 2352 1982 201 152 87 22 chr13 31261949 31261995 -88482903 - L2 LINE L2 -4 3309 3261 333 274 124 26 chr13 31262023 31262176 -88482722 + L3 LINE CR1 617 784 -793 2886 120 127 72 chr13 31262179 31262761 -88482137 + LTR18B LTR ERVL 1 614 0 1314 211 10 30 chr13 31262774 31263073 -88481825 + HERVL18 LTR ERVL 5 297 -5750 732 188 17 1 chr13 31263067 31263301 -88481597 + HERVL18 LTR ERVL 492 763 -5284 * 267 217 0 54 chr13 31263307 31263399 -88481499 + HERVL18 LTR ERVL 874 960 -5087 990 214 6 10 chr13 31263401 31263750 -88481148 + HERVL18 LTR ERVL 1401 1810 -4237 387 147 13 7 chr13 31263749 31263953 -88480945 + HERVL18 LTR ERVL 2119 2452 -3595 * 4308 176 29 3 chr13 31263952 31264704 -88480194 + HERVL18 LTR ERVL 2720 3491 -2556 2933 127 88 67 chr13 31264886 31265487 -88479411 + LTR18B LTR ERVL 1 614 0 561 195 46 35 chr13 31265526 31265700 -88479198 + L1MC5 LINE L1 7271 7446 -515 464 91 39 13 chr13 31265782 31265859 -88479039 + L1MC2 LINE L1 6251 6329 -15 267 329 128 0 chr13 31266196 31266345 -88478553 - MIR3 SINE MIR -35 173 6 724 146 111 80 chr13 31266428 31266582 -88478316 + MER33 DNA MER1_type 3 168 -2417 2345 94 0 3 chr13 31266582 31266880 -88478018 + AluSx SINE Alu 1 297 -15 724 146 111 80 chr13 31266880 31266951 -88477947 + MER33 DNA MER1_type 168 235 -89 313 185 116 110 chr13 31267031 31267045 -88477853 + L1MC4 LINE L1 7689 7701 -341 2054 172 38 81 chr13 31267045 31267573 -88477325 - MLT1D LTR MaLR 0 505 1 313 185 116 110 chr13 31267573 31267850 -88477048 + L1MC4 LINE L1 7701 7982 -60 1984 125 0 17 chr13 31267991 31268279 -88476619 + AluSx SINE Alu 1 283 -29 2658 148 107 53 chr13 31268818 31269399 -88475499 - LTR9 LTR ERV1 0 612 1 423 323 39 22 chr13 31270080 31270309 -88474589 + L1MEd LINE L1 523 755 -5364 2243 123 0 16 chr13 31272431 31272739 -88472159 + AluSq SINE Alu 1 303 -10 2239 85 0 47 chr13 31272847 31273164 -88471734 - AluY SINE Alu -9 302 1 314 310 61 5 chr13 31273243 31273456 -88471442 + L1MEd LINE L1 924 1148 -4971 926 286 40 28 chr13 31273491 31273987 -88470911 + L1MEd LINE L1 1164 1665 -4645 187 284 149 14 chr13 31274305 31274379 -88470519 - MIR SINE MIR -104 158 75 2291 122 0 0 chr13 31274421 31274733 -88470165 + AluSx SINE Alu 1 312 0 206 302 19 0 chr13 31275750 31275803 -88469095 + L2 LINE L2 3215 3268 -4 1697 142 49 59 chr13 31275961 31276249 -88468649 - AluSx SINE Alu -27 285 1 22 70 0 0 chr13 31277241 31277284 -88467614 + AT_rich Low_complexity Low_complexity 1 43 0 1372 100 5 5 chr13 31277408 31277598 -88467300 + AluSp SINE Alu 124 313 0 1532 176 0 69 chr13 31277609 31277944 -88466954 + AluJb SINE Alu 1 312 0 2231 106 0 3 chr13 31278069 31278370 -88466528 - AluSq SINE Alu -13 300 1 1978 221 50 38 chr13 31278901 31279372 -88465526 + L1M4 LINE L1 3507 3947 -2199 1573 193 0 4 chr13 31279372 31279641 -88465257 + AluJb SINE Alu 1 268 -44 1978 221 50 38 chr13 31279641 31279976 -88464922 + L1M4 LINE L1 3947 4277 -1869 2133 120 0 0 chr13 31279979 31280300 -88464598 + AluSx SINE Alu 1 321 0 2111 133 0 0 chr13 31280303 31280611 -88464287 + AluY SINE Alu 1 308 -3 652 192 0 0 chr13 31280631 31280751 -88464147 + FLAM_A SINE Alu 1 120 -13 1780 153 30 14 chr13 31280787 31281082 -88463816 + AluJb SINE Alu 11 310 -2 1244 102 0 0 chr13 31281111 31281277 -88463621 + AluSg/x SINE Alu 135 300 -10 1066 138 12 6 chr13 31281451 31281611 -88463287 - AluSp SINE Alu -20 293 133 330 304 188 14 chr13 31281613 31281751 -88463147 - MIR SINE MIR -97 165 4 2116 147 59 5 chr13 31281759 31282146 -88462752 + L1PA16 LINE L1 5759 6166 0 22 35 0 0 chr13 31282146 31282175 -88462723 + AT_rich Low_complexity Low_complexity 1 29 0 257 232 0 0 chr13 31282197 31282253 -88462645 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 992 149 0 0 chr13 31282517 31282679 -88462219 + AluSg/x SINE Alu 143 304 0 201 185 292 0 chr13 31283777 31283842 -88461056 + L2 LINE L2 3228 3311 -2 210 37 0 0 chr13 31283876 31283903 -88460995 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2229 92 0 0 chr13 31283905 31284188 -88460710 - AluSq SINE Alu -30 283 1 1748 108 46 23 chr13 31284247 31284507 -88460391 - MER1B DNA MER1_type -73 266 1 370 59 20 59 chr13 31285120 31285222 -88459676 + (TA)n Simple_repeat Simple_repeat 1 98 0 2191 79 3 7 chr13 31285222 31285512 -88459386 - AluSc SINE Alu -20 289 1 1237 75 0 0 chr13 31285859 31286020 -88458878 - AluY SINE Alu 0 311 151 21 36 0 0 chr13 31286398 31286426 -88458472 + AT_rich Low_complexity Low_complexity 1 28 0 2247 96 0 19 chr13 31286498 31286812 -88458086 - AluSx SINE Alu -2 310 3 498 298 53 58 chr13 31287453 31287580 -88457318 + MIR3 SINE MIR 16 143 -65 1960 123 3 41 chr13 31287580 31287896 -88457002 + AluSx SINE Alu 1 304 -8 498 298 53 58 chr13 31287896 31287956 -88456942 + MIR3 SINE MIR 143 202 -6 2266 44 0 11 chr13 31288071 31288341 -88456557 + AluY SINE Alu 1 267 -44 184 208 97 56 chr13 31289139 31289211 -88455687 - MIR3 SINE MIR -133 75 1 1995 141 3 0 chr13 31289280 31289571 -88455327 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 31289785 31289808 -88455090 + AT_rich Low_complexity Low_complexity 1 23 0 618 183 175 61 chr13 31291457 31291575 -88453323 + MER5C DNA MER1_type 1 104 -220 1634 175 52 7 chr13 31291575 31291861 -88453037 - AluSg SINE Alu -11 299 1 618 183 175 61 chr13 31291861 31291924 -88452974 + MER5C DNA MER1_type 104 158 -166 182 36 0 36 chr13 31291924 31291952 -88452946 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2021 123 18 0 chr13 31291952 31292228 -88452670 - AluSx SINE Alu -29 283 3 618 183 175 61 chr13 31292228 31292290 -88452608 + MER5C DNA MER1_type 157 274 -50 1877 145 48 0 chr13 31292309 31292599 -88452299 + AluJb SINE Alu 1 304 -8 295 345 78 14 chr13 31292633 31292775 -88452123 + L2 LINE L2 2903 3053 -219 1450 172 79 29 chr13 31294039 31294318 -88450580 + AluJo SINE Alu 3 295 -17 2016 140 3 13 chr13 31294448 31294756 -88450142 - AluSx SINE Alu -7 305 1 2292 64 0 3 chr13 31295122 31295404 -88449494 + AluY SINE Alu 1 281 -30 2070 99 3 46 chr13 31295651 31295953 -88448945 - AluSx SINE Alu -10 302 14 244 274 36 48 chr13 31296374 31296458 -88448440 - L3 LINE CR1 -114 1463 1381 2199 121 0 0 chr13 31296483 31296788 -88448110 + AluSx SINE Alu 4 308 -4 232 330 148 0 chr13 31296912 31297000 -88447898 - L2 LINE L2 -4 3268 3168 613 158 12 33 chr13 31297354 31297613 -88447285 + AluJo SINE Alu 1 303 -9 2045 173 35 5 chr13 31297824 31298200 -88446698 - MLT1B LTR MaLR -1 389 3 4859 186 53 77 chr13 31298203 31299607 -88445291 - MLT1B-int LTR MaLR -1 1370 1 1953 144 38 12 chr13 31299609 31299950 -88444948 - MLT1B LTR MaLR -2 388 39 315 315 73 18 chr13 31300036 31300201 -88444697 - L2 LINE L2 0 3313 3140 396 380 80 9 chr13 31300305 31300531 -88444367 - L2 LINE L2 -384 2930 2689 410 269 39 10 chr13 31300531 31300635 -88444263 + L1ME3A LINE L1 6000 6106 -64 583 307 131 13 chr13 31300636 31300949 -88443949 - L2 LINE L2 -737 2577 2228 360 274 68 8 chr13 31300980 31301097 -88443801 - L2 LINE L2 -6 3307 3184 544 315 49 36 chr13 31301143 31301473 -88443425 - L2 LINE L2 -278 3035 2633 710 293 174 26 chr13 31301482 31302058 -88442840 - L2 LINE L2 -1112 2202 1542 1076 156 106 28 chr13 31302775 31302993 -88441905 + MER46A DNA MER2_type 1 235 -1 35 0 0 0 chr13 31303926 31303961 -88440937 + AT_rich Low_complexity Low_complexity 1 35 0 2234 104 7 0 chr13 31304089 31304388 -88440510 - AluSx SINE Alu -11 301 1 191 372 58 0 chr13 31304634 31304720 -88440178 + MIR SINE MIR 49 139 -123 2414 63 0 3 chr13 31306341 31306640 -88438258 + AluY SINE Alu 1 298 -13 21 0 0 0 chr13 31307175 31307196 -88437702 + AT_rich Low_complexity Low_complexity 1 21 0 510 194 29 10 chr13 31308128 31308231 -88436667 + FLAM_A SINE Alu 12 116 -26 2248 95 0 20 chr13 31308443 31308748 -88436150 + AluSx SINE Alu 1 299 -13 1287 188 51 51 chr13 31308759 31309035 -88435863 + AluJo SINE Alu 6 281 -31 2149 112 0 3 chr13 31309333 31309627 -88435271 - AluSx SINE Alu -19 293 1 22 70 0 0 chr13 31311191 31311234 -88433664 + AT_rich Low_complexity Low_complexity 1 43 0 343 191 25 134 chr13 31312025 31312182 -88432716 + L1ME3A LINE L1 5823 5962 -208 493 285 40 45 chr13 31312269 31312469 -88432429 + L1ME3A LINE L1 5966 6164 -6 1052 159 35 89 chr13 31312759 31312962 -88431936 + AluJb SINE Alu 46 234 -78 1987 128 24 3 chr13 31312962 31313260 -88431638 + AluSq SINE Alu 1 304 -9 1052 159 35 89 chr13 31313260 31313313 -88431585 + AluJb SINE Alu 234 288 -24 25 31 0 0 chr13 31313434 31313466 -88431432 + AT_rich Low_complexity Low_complexity 1 32 0 530 143 0 19 chr13 31313796 31313901 -88430997 + L1MB8 LINE L1 6071 6173 -5 2287 95 0 16 chr13 31313962 31314277 -88430621 + AluY SINE Alu 1 310 -1 669 246 39 75 chr13 31314358 31314692 -88430206 + MER46C DNA MER2_type 2 323 -15 2157 110 0 0 chr13 31315283 31315582 -88429316 + AluSx SINE Alu 1 299 -13 30 0 0 0 chr13 31315863 31315893 -88429005 + AT_rich Low_complexity Low_complexity 1 30 0 1955 152 3 3 chr13 31316698 31316995 -88427903 + AluSx SINE Alu 1 297 -15 2107 124 3 0 chr13 31316995 31317293 -88427605 + AluSg SINE Alu 1 299 -11 1643 94 17 6 chr13 31317298 31317539 -88427359 + L1PB1 LINE L1 5888 6129 -22 2054 131 0 0 chr13 31318348 31318653 -88426245 - AluJb SINE Alu 0 305 1 32 0 0 0 chr13 31318851 31318883 -88426015 + AT_rich Low_complexity Low_complexity 1 32 0 270 200 0 0 chr13 31319085 31319130 -88425768 + AluSc SINE Alu 127 171 -128 949 144 0 0 chr13 31319132 31319264 -88425634 + AluJo/FRAM SINE Alu 156 287 -25 626 225 105 112 chr13 31319312 31320200 -88424698 + L1MC5 LINE L1 7036 7917 -44 474 285 8 49 chr13 31320273 31320396 -88424502 + MER5B DNA MER1_type 1 118 -60 273 75 0 0 chr13 31320399 31320439 -88424459 + (T)n Simple_repeat Simple_repeat 1 40 0 272 173 19 0 chr13 31320443 31320495 -88424403 + MER5B DNA MER1_type 125 177 -1 420 323 29 31 chr13 31320779 31320990 -88423908 - MIR SINE MIR -50 212 3 2258 86 21 0 chr13 31321372 31321662 -88423236 - AluSg SINE Alu -14 296 1 1624 146 104 19 chr13 31322471 31322779 -88422119 + MER2 DNA MER2_type 7 340 -5 398 130 26 26 chr13 31322833 31322910 -88421988 - MADE1 DNA Mariner -1 79 3 212 57 0 29 chr13 31323245 31323280 -88421618 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2310 104 0 3 chr13 31323309 31323616 -88421282 - AluSx SINE Alu -5 307 2 197 253 121 0 chr13 31324161 31324244 -88420654 - MIR SINE MIR 0 262 170 1660 261 53 37 chr13 31324347 31324892 -88420006 + MLT1E LTR MaLR 23 576 -17 2065 192 63 21 chr13 31325332 31325806 -88419092 - MLT1D LTR MaLR -9 496 3 325 314 35 30 chr13 31325933 31326102 -88418796 - L1 LINE L1 -1085 5061 4892 2426 80 0 6 chr13 31326170 31326481 -88418417 - AluSc SINE Alu 0 309 1 21 0 0 0 chr13 31326481 31326502 -88418396 + AT_rich Low_complexity Low_complexity 1 21 0 677 157 35 9 chr13 31326502 31326617 -88418281 - FLAM_C SINE Alu -25 118 1 320 281 180 11 chr13 31326617 31326884 -88418014 - L1 LINE L1 -1316 4830 4519 728 138 111 3 chr13 31327108 31327332 -88417566 - AluJb SINE Alu -6 306 1 818 174 0 0 chr13 31329163 31329295 -88415603 - FLAM_C SINE Alu 0 133 2 22 35 0 0 chr13 31330652 31330681 -88414217 + AT_rich Low_complexity Low_complexity 1 29 0 228 67 0 0 chr13 31330842 31330872 -88414026 + (TA)n Simple_repeat Simple_repeat 2 31 0 1602 122 21 14 chr13 31331383 31331662 -88413236 + AluSx SINE Alu 1 281 -31 270 208 13 52 chr13 31332968 31333045 -88411853 + MIR SINE MIR 183 256 -6 618 245 179 72 chr13 31333396 31333585 -88411313 - L1MC4 LINE L1 -537 7505 7338 2366 95 0 0 chr13 31333585 31333891 -88411007 + AluSq SINE Alu 1 306 -7 618 245 179 72 chr13 31333891 31334158 -88410740 - L1MC4 LINE L1 -704 7338 7000 1294 143 19 184 chr13 31334164 31334563 -88410335 - L1MC3 LINE L1 -8 7777 7467 2167 124 3 0 chr13 31334563 31334869 -88410029 - AluSx SINE Alu -5 307 1 1294 143 19 184 chr13 31334869 31334943 -88409955 - L1MC3 LINE L1 -318 7467 7382 269 61 0 0 chr13 31334943 31334976 -88409922 + MLT1A2 LTR MaLR 281 313 -61 1316 185 0 0 chr13 31334980 31335202 -88409696 - AluJb SINE Alu -4 308 87 311 107 36 0 chr13 31335239 31335295 -88409603 + T-rich Low_complexity Low_complexity 2 59 0 1813 179 0 10 chr13 31335317 31335613 -88409285 - AluJb SINE Alu -18 294 2 757 262 71 46 chr13 31335690 31336127 -88408771 - MER39 LTR ERV1 0 629 39 3465 155 113 119 chr13 31336145 31336708 -88408190 + L1 LINE L1 4275 4840 -1306 1963 136 0 0 chr13 31336708 31336980 -88407918 + AluSx SINE Alu 7 278 -34 243 0 0 0 chr13 31336985 31337012 -88407886 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3465 155 113 119 chr13 31337012 31337083 -88407815 + L1 LINE L1 4844 4914 -1232 1920 138 7 0 chr13 31337083 31337359 -88407539 - AluSg SINE Alu -32 278 1 2217 126 0 3 chr13 31337363 31337672 -88407226 - AluSx SINE Alu -4 308 1 3465 155 113 119 chr13 31337672 31338092 -88406806 + L1 LINE L1 4917 5336 -810 2092 119 7 3 chr13 31338092 31338385 -88406513 - AluSc SINE Alu -11 298 5 3465 155 113 119 chr13 31338385 31338441 -88406457 + L1 LINE L1 5336 5391 -755 320 104 0 21 chr13 31338422 31338470 -88406428 + L1MB2 LINE L1 4876 4922 -1224 * 354 200 0 0 chr13 31338470 31338525 -88406373 + Alu SINE Alu 1 55 -245 1999 125 4 0 chr13 31338527 31338852 -88406046 + AluSq SINE Alu 3 328 0 1047 172 23 50 chr13 31338852 31339073 -88405825 + MSTB2 LTR MaLR 240 454 -3 363 171 0 0 chr13 31340621 31340691 -88404207 + L1MB4 LINE L1 6111 6180 0 811 184 12 212 chr13 31340694 31340833 -88404065 + L1MB2 LINE L1 4995 5160 -986 1991 142 0 0 chr13 31340833 31341114 -88403784 + AluSx SINE Alu 1 281 -31 317 158 18 0 chr13 31341114 31341171 -88403727 + Alu SINE Alu 245 302 0 811 184 12 212 chr13 31341171 31341393 -88403505 + L1MB2 LINE L1 5158 5329 -817 1728 117 41 63 chr13 31341395 31341712 -88403186 + AluJb SINE Alu 3 312 0 243 0 0 0 chr13 31341718 31341745 -88403153 + (TA)n Simple_repeat Simple_repeat 2 28 0 4240 146 72 45 chr13 31341836 31342331 -88402567 + L1MB2 LINE L1 5322 5849 -322 641 217 8 0 chr13 31342331 31342451 -88402447 + FLAM_C SINE Alu 1 121 -12 4240 146 72 45 chr13 31342451 31342776 -88402122 + L1MB2 LINE L1 5849 6164 -7 848 308 13 0 chr13 31344153 31344377 -88400521 + MIR SINE MIR 2 228 -34 1520 199 21 0 chr13 31344705 31344991 -88399907 + AluJo SINE Alu 1 292 -20 2188 110 0 28 chr13 31344993 31345311 -88399587 + AluSx SINE Alu 1 309 -3 201 242 16 0 chr13 31345606 31345668 -88399230 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 189 0 0 0 chr13 31345704 31345725 -88399173 + (TC)n Simple_repeat Simple_repeat 2 22 0 2210 121 0 6 chr13 31345725 31346039 -88398859 - AluSx SINE Alu 0 312 1 2064 203 17 3 chr13 31346254 31346614 -88398284 + MLT1A1 LTR MaLR 1 365 0 40 0 0 0 chr13 31346636 31346676 -88398222 + AT_rich Low_complexity Low_complexity 1 40 0 200 234 21 0 chr13 31346785 31346832 -88398066 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 883 261 47 8 chr13 31346838 31347091 -88397807 - L1MC4a LINE L1 -1838 5970 5708 217 295 45 36 chr13 31347164 31347276 -88397622 + L2 LINE L2 2185 2297 -1017 1270 134 8 5 chr13 31348080 31348453 -88396445 + LTR47B LTR ERVL 1 443 0 4246 86 21 3 chr13 31348552 31349150 -88395748 + L1PA13 LINE L1 5564 6171 0 1563 137 15 27 chr13 31349334 31349596 -88395302 - THE1C LTR MaLR 0 375 117 1576 157 0 130 chr13 31349751 31349948 -88394950 - AluJo SINE Alu -1 301 167 1971 136 0 7 chr13 31349948 31350235 -88394663 - AluSx SINE Alu -27 285 1 1576 157 0 130 chr13 31350235 31350382 -88394516 - AluJo SINE Alu -135 167 2 244 220 34 85 chr13 31350383 31350423 -88394475 - L1ME2 LINE L1 -194 5970 5930 1913 125 76 0 chr13 31350423 31350711 -88394187 + AluSg SINE Alu 1 310 0 244 220 34 85 chr13 31350711 31350788 -88394110 - L1ME2 LINE L1 -234 5930 5859 2178 222 41 32 chr13 31350837 31351533 -88393365 - L1ME2 LINE L1 -306 5860 5158 768 187 38 106 chr13 31351533 31351758 -88393140 + L1MA4 LINE L1 5995 6161 -139 773 191 8 8 chr13 31351758 31351884 -88393014 + FLAM_A SINE Alu 1 126 -7 768 187 38 106 chr13 31351884 31352011 -88392887 + L1MA4 LINE L1 6161 6295 -5 * 3438 231 31 27 chr13 31352002 31352798 -88392100 - L1ME2 LINE L1 -968 5178 4387 2238 105 3 3 chr13 31352798 31353092 -88391806 - AluSc SINE Alu -15 294 1 3438 231 31 27 chr13 31353092 31353142 -88391756 - L1ME2 LINE L1 -1759 4387 4339 1965 153 0 7 chr13 31353142 31353437 -88391461 + AluSx SINE Alu 1 293 -19 3438 231 31 27 chr13 31353437 31353641 -88391257 - L1ME2 LINE L1 -1807 4339 4122 465 217 45 54 chr13 31353646 31353867 -88391031 - L1ME2 LINE L1 -2900 3246 3028 198 0 0 0 chr13 31353877 31353899 -88390999 + (T)n Simple_repeat Simple_repeat 1 22 0 2031 91 52 21 chr13 31353943 31354229 -88390669 + AluY SINE Alu 1 295 -16 3551 102 4 2 chr13 31354408 31354896 -88390002 + MER41B LTR ERV1 147 635 0 982 202 99 34 chr13 31354896 31355129 -88389769 - MER57A-int LTR ERV1 -7287 250 3 2191 197 33 0 chr13 31355131 31355521 -88389377 - MER57A LTR ERV1 0 403 1 254 228 53 0 chr13 31355521 31355578 -88389320 - MER45 DNA AcHobo -876 77 18 1816 169 42 17 chr13 31355578 31355934 -88388964 + MLT1A1 LTR MaLR 1 365 0 2229 131 0 0 chr13 31356058 31356370 -88388528 + AluSx SINE Alu 1 312 0 338 299 116 42 chr13 31356370 31356654 -88388244 + L1ME4a LINE L1 5737 6041 -80 257 0 30 0 chr13 31357261 31357294 -88387604 + (TA)n Simple_repeat Simple_repeat 2 35 0 2125 109 7 7 chr13 31357294 31357588 -88387310 - AluSq SINE Alu -18 295 2 462 78 70 0 chr13 31358246 31358374 -88386524 + (TA)n Simple_repeat Simple_repeat 2 138 0 24 0 0 0 chr13 31358374 31358398 -88386500 + AT_rich Low_complexity Low_complexity 1 24 0 682 33 44 50 chr13 31358398 31358579 -88386319 + (TA)n Simple_repeat Simple_repeat 1 180 0 2119 111 32 0 chr13 31358579 31358859 -88386039 - AluSx SINE Alu -23 289 1 389 109 0 0 chr13 31359776 31359831 -88385067 - MSTA LTR MaLR 0 428 374 1862 132 150 6 chr13 31359899 31360226 -88384672 - MSTA LTR MaLR -54 374 1 2081 122 21 0 chr13 31360589 31360877 -88384021 - AluSg SINE Alu -14 296 3 2047 135 3 0 chr13 31361138 31361441 -88383457 - AluSp SINE Alu -9 304 1 2303 106 0 0 chr13 31361542 31361845 -88383053 + AluSc SINE Alu 4 306 -3 1594 184 3 11 chr13 31361926 31362209 -88382689 + AluJb SINE Alu 1 281 -31 2041 115 0 14 chr13 31362209 31362503 -88382395 - AluSc SINE Alu -18 291 1 996 122 0 0 chr13 31362699 31362838 -88382060 - AluSq/x SINE Alu -174 139 1 3289 168 20 19 chr13 31362839 31363593 -88381305 - L1MA8 LINE L1 -461 5830 5074 2661 113 68 5 chr13 31363593 31363993 -88380905 - MSTB LTR MaLR 0 426 2 3289 168 20 19 chr13 31363993 31364029 -88380869 - L1MA8 LINE L1 -1217 5074 5040 555 16 0 0 chr13 31364039 31364103 -88380795 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 934 182 53 0 chr13 31364103 31364273 -88380625 - AluSg/x SINE Alu 0 310 132 803 159 22 0 chr13 31364276 31364414 -88380484 - L1MA8 LINE L1 -1094 5052 4912 204 97 0 0 chr13 31364415 31364446 -88380452 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 824 184 21 7 chr13 31364450 31364591 -88380307 - AluJb SINE Alu -37 275 133 1452 183 3 99 chr13 31364591 31364925 -88379973 - AluJb SINE Alu 0 302 1 1406 147 25 4 chr13 31364930 31365168 -88379730 - MSTB2 LTR MaLR -214 243 1 292 378 7 14 chr13 31365262 31365279 -88379619 + L2 LINE L2 2564 2580 -734 2696 189 42 12 chr13 31365279 31365637 -88379261 + LTR42 LTR ERVL 1 378 -117 2319 96 6 3 chr13 31365637 31365949 -88378949 - AluSp SINE Alu 0 313 1 2696 189 42 12 chr13 31365949 31366071 -88378827 + LTR42 LTR ERVL 378 495 0 292 378 7 14 chr13 31366071 31366196 -88378702 + L2 LINE L2 2580 2705 -609 331 407 19 0 chr13 31366207 31366369 -88378529 - L2 LINE L2 -4 3268 3104 1595 201 26 63 chr13 31366372 31366749 -88378149 + MLT2D LTR ERVL 1 363 -51 1163 157 30 0 chr13 31366749 31366946 -88377952 + MER2 DNA MER2_type 4 206 -139 344 122 0 0 chr13 31367024 31367073 -88377825 + MLT2D LTR ERVL 472 520 0 321 221 44 44 chr13 31367180 31367293 -88377605 + MER117 DNA MER1_type 12 124 -73 272 294 69 0 chr13 31367496 31367598 -88377300 - MIR SINE MIR -121 141 33 1498 150 21 25 chr13 31367762 31368002 -88376896 - AluJo SINE Alu -73 239 1 283 329 29 0 chr13 31368060 31368200 -88376698 - MIR SINE MIR 0 262 119 2084 133 0 0 chr13 31368441 31368727 -88376171 - AluSc SINE Alu -23 286 1 7898 43 0 0 chr13 31368903 31370193 -88374705 + L1PA5 LINE L1 4865 6154 0 282 276 35 0 chr13 31370240 31370327 -88374571 + L1ME LINE L1 5528 5617 -504 489 158 0 88 chr13 31370354 31370413 -88374485 - L1MC5 LINE L1 -53 7908 7845 2859 101 8 11 chr13 31370413 31370789 -88374109 + THE1C LTR MaLR 1 375 0 10907 105 39 37 chr13 31370789 31372365 -88372533 + THE1C-int LTR MaLR 1 1580 0 2821 116 0 11 chr13 31372365 31372744 -88372154 + THE1C LTR MaLR 1 375 0 489 158 0 88 chr13 31372744 31372796 -88372102 - L1MC5 LINE L1 -113 7848 7805 366 231 157 0 chr13 31372936 31373044 -88371854 - L1ME3A LINE L1 0 6170 6046 730 146 59 83 chr13 31373061 31373315 -88371583 - L1MC5 LINE L1 -261 7700 7453 1411 198 67 56 chr13 31373319 31373716 -88371182 - L1MC5 LINE L1 -579 7382 6978 2285 92 0 7 chr13 31373716 31374032 -88370866 - AluSc SINE Alu 0 309 1 1411 198 67 56 chr13 31374032 31374115 -88370783 - L1MC5 LINE L1 -983 6978 6897 236 305 25 25 chr13 31374112 31374230 -88370668 + L1ME LINE L1 5750 5867 -254 * 25 31 0 0 chr13 31374230 31374262 -88370636 + AT_rich Low_complexity Low_complexity 1 32 0 1737 166 21 0 chr13 31375284 31375568 -88369330 - AluJo SINE Alu -22 290 1 2321 84 3 0 chr13 31376309 31376607 -88368291 - AluSg1 SINE Alu -10 299 1 2099 203 76 13 chr13 31377048 31377521 -88367377 + MLT1D LTR MaLR 1 503 -2 192 253 161 23 chr13 31378197 31378284 -88366614 - L2 LINE L2 0 3313 3215 2265 104 7 7 chr13 31378285 31378594 -88366304 + AluSc SINE Alu 1 309 0 41 66 0 0 chr13 31380379 31380455 -88364443 + GC_rich Low_complexity Low_complexity 1 76 0 49 69 0 9 chr13 31380509 31380591 -88364307 + GC_rich Low_complexity Low_complexity 1 83 -32 204 40 0 0 chr13 31380591 31380616 -88364282 + (CCG)n Simple_repeat Simple_repeat 3 27 0 49 69 0 9 chr13 31380616 31380649 -88364249 + GC_rich Low_complexity Low_complexity 83 115 0 37 76 0 0 chr13 31380720 31380799 -88364099 + GC_rich Low_complexity Low_complexity 1 79 0 248 273 108 65 chr13 31382715 31382854 -88362044 - MIR3 SINE MIR -23 185 41 21 0 0 0 chr13 31384563 31384584 -88360314 + AT_rich Low_complexity Low_complexity 1 21 0 2145 111 34 0 chr13 31384720 31385017 -88359881 - AluSg SINE Alu -3 307 1 28 61 0 0 chr13 31385100 31385149 -88359749 + AT_rich Low_complexity Low_complexity 1 49 0 261 285 139 0 chr13 31385173 31385338 -88359560 - L1MC/D LINE L1 -2248 5560 5373 2204 98 0 10 chr13 31385851 31386158 -88358740 - AluSq SINE Alu -9 304 1 290 275 148 40 chr13 31386396 31386545 -88358353 + MIR SINE MIR 2 166 -96 568 197 61 0 chr13 31386545 31386677 -88358221 - L1MB7 LINE L1 0 6184 6045 267 163 0 0 chr13 31386699 31386748 -88358150 + L1MA5 LINE L1 5546 5594 -706 * 413 159 105 2 chr13 31386722 31386838 -88358060 + L1MA5 LINE L1 5958 6096 -204 2127 143 91 10 chr13 31386838 31386988 -88357910 - Tigger2 DNA MER2_type 0 2718 2582 1983 91 0 0 chr13 31386988 31387241 -88357657 - AluSq SINE Alu -60 253 1 2127 143 91 10 chr13 31387241 31387496 -88357402 - Tigger2 DNA MER2_type -136 2582 2280 377 143 0 0 chr13 31387494 31387550 -88357348 - Tigger2 DNA MER2_type -2649 69 14 * 1028 120 40 0 chr13 31387551 31387726 -88357172 + L1MA5 LINE L1 6114 6295 -5 296 294 12 0 chr13 31388813 31388898 -88356000 + L2 LINE L2 2438 2523 -791 22 0 0 0 chr13 31388917 31388939 -88355959 + AT_rich Low_complexity Low_complexity 1 22 0 343 198 10 0 chr13 31389425 31389493 -88355405 + AluS SINE Alu 2 57 -244 23 33 0 0 chr13 31389641 31389671 -88355227 + AT_rich Low_complexity Low_complexity 1 30 0 2979 207 102 4 chr13 31389671 31390630 -88354268 - L1ME2 LINE L1 -9 6089 5041 1933 129 16 32 chr13 31390633 31390943 -88353955 - AluJo SINE Alu -7 305 1 287 270 0 0 chr13 31390943 31391017 -88353881 - L1ME2 LINE L1 -1978 4102 4029 699 169 48 16 chr13 31391018 31391142 -88353756 + FLAM_A SINE Alu 1 128 -5 2065 91 6 72 chr13 31391144 31391463 -88353435 + AluSc SINE Alu 1 298 -11 338 229 10 10 chr13 31391517 31391613 -88353285 - L1ME2 LINE L1 -2045 4035 3940 22 35 0 0 chr13 31391659 31391688 -88353210 + AT_rich Low_complexity Low_complexity 1 29 0 2161 92 11 7 chr13 31391689 31391973 -88352925 - AluSg SINE Alu -25 285 1 871 186 14 0 chr13 31392087 31392227 -88352671 - FRAM SINE Alu -26 150 9 443 268 41 41 chr13 31392227 31392359 -88352539 - L1ME2 LINE L1 -4672 1589 1455 2471 87 0 0 chr13 31392359 31392670 -88352228 - AluY SINE Alu 0 311 1 443 268 41 41 chr13 31392670 31392731 -88352167 - L1ME2 LINE L1 -4805 1456 1396 402 201 129 110 chr13 31392818 31392860 -88352038 - L1ME2 LINE L1 -4863 1115 1075 2136 121 0 10 chr13 31392860 31393165 -88351733 - AluSg SINE Alu -8 302 1 402 201 129 110 chr13 31393165 31393233 -88351665 - L1ME2 LINE L1 -4903 1075 1046 2289 90 7 10 chr13 31393233 31393534 -88351364 + AluY SINE Alu 1 300 -11 402 201 129 110 chr13 31393534 31393631 -88351267 - L1ME2 LINE L1 -4932 1046 952 332 221 108 15 chr13 31393727 31393929 -88350969 - L1ME2 LINE L1 -5236 834 484 2092 117 7 10 chr13 31394057 31394357 -88350541 + AluSx SINE Alu 1 299 -13 476 276 125 53 chr13 31394458 31394897 -88350001 - L1ME2 LINE L1 -5597 473 12 37965 65 14 4 chr13 31395695 31401773 -88343125 - L1PA5 LINE L1 -2 6152 12 1481 259 75 60 chr13 31402010 31402659 -88342239 - MLT2F LTR ERVL -4 659 1 1877 232 71 35 chr13 31402964 31403499 -88341399 - ERVL LTR ERVL -360 5404 4851 727 233 88 18 chr13 31403516 31403744 -88341154 - L2 LINE L2 -1626 1688 1445 237 202 32 96 chr13 31403956 31404050 -88340848 + MIR SINE MIR 175 262 0 728 248 124 5 chr13 31404267 31404477 -88340421 + MIR SINE MIR 11 245 -17 297 351 73 20 chr13 31404953 31405104 -88339794 + L2 LINE L2 2582 2740 -574 2140 119 0 3 chr13 31405104 31405407 -88339491 - AluJb SINE Alu -8 304 3 1196 74 0 13 chr13 31405819 31405968 -88338930 - AluSq/x SINE Alu -165 147 1 742 173 12 36 chr13 31405976 31406144 -88338754 - L1MB8 LINE L1 0 6178 6015 1751 190 65 8 chr13 31406154 31406522 -88338376 + MSTD LTR MaLR 1 389 -7 3256 204 32 4 chr13 31406523 31407879 -88337019 - L1MB8 LINE L1 -185 5993 4602 2320 103 0 0 chr13 31407898 31408198 -88336700 - AluSx SINE Alu -12 300 1 213 281 151 41 chr13 31408279 31408425 -88336473 - MIR SINE MIR -98 164 3 931 222 73 28 chr13 31408577 31408865 -88336033 - L1ME3A LINE L1 -37 6116 5816 184 307 163 33 chr13 31409238 31409453 -88335445 + MIR SINE MIR 14 256 -6 2411 75 0 3 chr13 31409660 31409955 -88334943 - AluSq SINE Alu -19 294 1 344 288 50 25 chr13 31411062 31411260 -88333638 + MLT1L LTR MaLR 1 203 -412 275 214 127 40 chr13 31411269 31411395 -88333503 - L1ME3A LINE L1 -685 5462 5326 1071 156 53 97 chr13 31411464 31411824 -88333074 - MLT1A1 LTR MaLR -3 362 19 942 237 35 9 chr13 31411882 31412110 -88332788 + Tigger7 DNA MER2_type 1 234 -471 297 197 42 0 chr13 31412111 31412182 -88332716 + Tigger7 DNA MER2_type 2482 2555 -32 318 270 98 42 chr13 31412444 31412659 -88332239 - L1ME3A LINE L1 -1176 4953 4727 2639 147 153 6 chr13 31412833 31413349 -88331549 - MER7C DNA MER2_type -1 601 10 2152 128 0 0 chr13 31413403 31413699 -88331199 - AluSq SINE Alu -17 296 1 398 258 161 51 chr13 31413845 31413982 -88330916 - L1ME3A LINE L1 -1909 4220 4099 2389 54 10 10 chr13 31413982 31414276 -88330622 + AluY SINE Alu 7 300 -11 398 258 161 51 chr13 31414276 31414530 -88330368 - L1ME3A LINE L1 -2030 4099 3786 359 131 172 30 chr13 31414571 31414670 -88330228 - MER3 DNA MER1_type -96 113 1 1919 154 0 10 chr13 31414782 31415075 -88329823 + AluJb SINE Alu 1 290 -22 374 286 137 24 chr13 31415082 31415324 -88329574 - L1ME3A LINE L1 -2515 3614 3401 810 215 98 5 chr13 31415324 31415529 -88329369 + MER58A DNA MER1_type 1 224 0 374 286 137 24 chr13 31415529 31415923 -88328975 - L1ME3A LINE L1 -2728 3401 2906 353 290 101 22 chr13 31415930 31416426 -88328472 - L1ME3A LINE L1 -3279 2850 2316 914 193 69 112 chr13 31416446 31416946 -88327952 - LTR8A LTR ERV1 -15 707 102 776 208 72 44 chr13 31416989 31417239 -88327659 - LTR8 LTR ERV1 -434 257 1 1600 107 0 0 chr13 31417409 31417624 -88327274 - AluSc SINE Alu -8 301 87 21 0 0 0 chr13 31417631 31417652 -88327246 + AT_rich Low_complexity Low_complexity 1 21 0 237 261 159 52 chr13 31417884 31418344 -88326554 - L1ME3A LINE L1 -5011 1108 600 243 88 0 0 chr13 31418699 31418733 -88326165 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1009 185 177 12 chr13 31418733 31418976 -88325922 - AluJb SINE Alu -18 284 2 2006 141 0 7 chr13 31419436 31419740 -88325158 - AluSx SINE Alu -10 302 1 1634 231 94 36 chr13 31420314 31420864 -88324034 - MER119 DNA MER1_type -1 582 1 209 229 16 33 chr13 31421448 31421509 -88323389 + GA-rich Low_complexity Low_complexity 1 60 0 2020 119 31 3 chr13 31421875 31422168 -88322730 + AluSx SINE Alu 1 301 -11 369 261 90 24 chr13 31422378 31422652 -88322246 - L1P4 LINE L1 -302 5819 5533 313 274 10 49 chr13 31423381 31423483 -88321415 + MIR SINE MIR 57 154 -108 1053 144 8 81 chr13 31423901 31424137 -88320761 + MER20B DNA MER1_type 1 219 0 801 263 106 32 chr13 31424255 31424390 -88320508 + L2 LINE L2 2950 3074 -239 2097 99 13 33 chr13 31424390 31424693 -88320205 - AluSx SINE Alu -15 297 1 801 263 106 32 chr13 31424693 31424704 -88320194 + L2 LINE L2 3074 3083 -230 1595 166 83 3 chr13 31424704 31424993 -88319905 - AluJb SINE Alu 0 312 1 801 263 106 32 chr13 31424993 31425184 -88319714 + L2 LINE L2 3083 3313 0 276 322 0 22 chr13 31425449 31425539 -88319359 + MER5A DNA MER1_type 36 123 -66 2241 178 103 8 chr13 31425564 31426422 -88318476 + L1MB4 LINE L1 4887 5831 -349 1373 90 6 0 chr13 31426422 31426599 -88318299 + AluSc SINE Alu 1 178 -131 1262 148 114 25 chr13 31426608 31426932 -88317966 + L1MB4 LINE L1 5828 6180 0 351 171 13 0 chr13 31426944 31427020 -88317878 + L1MB8 LINE L1 6102 6178 0 1299 181 81 54 chr13 31427970 31428184 -88316714 - L1MB7 LINE L1 -347 5837 5630 2205 104 3 3 chr13 31428184 31428481 -88316417 - AluSg SINE Alu -13 297 1 1299 181 81 54 chr13 31428481 31428602 -88316296 - L1MB7 LINE L1 -554 5630 5514 1533 131 30 128 chr13 31428602 31428938 -88315960 - AluJo SINE Alu -9 303 1 2402 93 0 0 chr13 31428942 31429242 -88315656 - AluSc SINE Alu -9 300 1 1299 181 81 54 chr13 31429242 31429270 -88315628 - L1MB7 LINE L1 -672 5512 5458 2445 56 0 7 chr13 31429366 31429669 -88315229 - AluY SINE Alu -10 301 1 420 237 98 6 chr13 31429707 31429888 -88315010 + MIR SINE MIR 21 216 -46 377 242 153 32 chr13 31430111 31430235 -88314663 + MIR SINE MIR 16 154 -108 831 301 194 44 chr13 31430252 31431467 -88313431 - L2 LINE L2 -16 3297 1891 983 281 89 37 chr13 31431467 31431975 -88312923 - MLT1H LTR MaLR -4 545 12 487 266 42 151 chr13 31431978 31432622 -88312276 - L2 LINE L2 -1415 1899 1326 2071 141 0 0 chr13 31433843 31434147 -88310751 - AluSx SINE Alu -8 304 1 2501 53 0 10 chr13 31434373 31434676 -88310222 + AluY SINE Alu 1 300 -11 212 259 0 17 chr13 31434911 31434969 -88309929 + CT-rich Low_complexity Low_complexity 2 58 0 292 269 126 42 chr13 31435497 31435616 -88309282 + L2 LINE L2 3141 3269 -3 348 314 99 84 chr13 31435844 31436188 -88308710 - L2 LINE L2 -1 3271 2923 307 288 24 16 chr13 31436898 31437038 -88307860 - L1M4 LINE L1 -1062 5084 4944 2194 149 12 0 chr13 31437126 31437469 -88307429 + MER7A DNA MER2_type 1 345 -1 918 241 100 17 chr13 31437478 31437768 -88307130 - L1M4 LINE L1 -1812 4334 4021 436 171 0 40 chr13 31437802 31437878 -88307020 + Tigger5 DNA MER2_type 7 79 -2244 494 158 0 12 chr13 31437898 31437980 -88306918 + Tigger5 DNA MER2_type 2242 2322 -1 921 251 124 94 chr13 31438007 31438610 -88306288 - L1M4 LINE L1 -1856 4290 3650 1171 227 106 0 chr13 31438610 31438883 -88306015 - AluJo SINE Alu 0 302 1 921 251 124 94 chr13 31438883 31439174 -88305724 - L1M4 LINE L1 -2496 3650 3369 1230 222 100 61 chr13 31439306 31439573 -88305325 - L1ME3A LINE L1 0 6170 5915 264 40 60 0 chr13 31439573 31439623 -88305275 + (TG)n Simple_repeat Simple_repeat 2 54 0 1581 204 4 7 chr13 31439623 31439903 -88304995 - AluJb SINE Alu -29 283 5 1230 222 100 61 chr13 31439903 31440162 -88304736 - L1ME3A LINE L1 -254 5916 5622 229 116 47 0 chr13 31440210 31440253 -88304645 - L1MEd LINE L1 -3834 2810 2766 215 267 0 0 chr13 31440347 31440392 -88304506 - MIR SINE MIR -21 241 197 282 360 15 5 chr13 31440404 31440601 -88304297 - L1MEd LINE L1 -4722 2103 1905 23 0 0 0 chr13 31440628 31440651 -88304247 + AT_rich Low_complexity Low_complexity 1 23 0 321 303 64 26 chr13 31440818 31440897 -88304001 - L1MEd LINE L1 -5086 1456 1381 1378 176 74 35 chr13 31440897 31441181 -88303717 - AluJb SINE Alu -17 295 1 321 303 64 26 chr13 31441181 31441349 -88303549 - L1MEd LINE L1 -5161 1381 1225 294 316 147 26 chr13 31441392 31441658 -88303240 - L1MEd LINE L1 -5345 1289 992 21 36 0 0 chr13 31442050 31442078 -88302820 + AT_rich Low_complexity Low_complexity 1 28 0 1372 161 16 79 chr13 31446056 31446373 -88298525 + AluSx SINE Alu 1 297 -15 1792 127 56 0 chr13 31446621 31446905 -88297993 + AluSx SINE Alu 3 302 -10 240 288 0 30 chr13 31447023 31447089 -88297809 - L2 LINE L2 -50 3222 3159 5656 104 25 34 chr13 31448128 31448975 -88295923 - L1PA15 LINE L1 -4 6161 5308 2031 122 20 0 chr13 31448975 31449271 -88295627 - AluSg SINE Alu -8 302 1 5656 104 25 34 chr13 31449271 31450192 -88294706 - L1PA15 LINE L1 -857 5308 4397 1988 147 3 7 chr13 31450196 31450496 -88294402 - AluSx SINE Alu -13 299 1 2971 218 25 1 chr13 31450570 31451253 -88293645 - L1PA15-16 LINE L1 -3388 3461 2763 23 33 0 0 chr13 31452636 31452666 -88292232 + AT_rich Low_complexity Low_complexity 1 30 0 400 273 82 31 chr13 31453469 31453663 -88291235 + L1MEd LINE L1 606 809 -5310 26 0 0 0 chr13 31454582 31454608 -88290290 + AT_rich Low_complexity Low_complexity 1 26 0 2260 120 0 7 chr13 31454702 31455011 -88289887 + AluSx SINE Alu 1 307 -5 346 318 72 63 chr13 31455140 31455458 -88289440 + HAL1 LINE L1 1214 1534 -973 474 286 143 6 chr13 31455708 31456030 -88288868 + L1MEd LINE L1 2242 2607 -3522 628 281 151 87 chr13 31456288 31457249 -88287649 + L1MEd LINE L1 3042 4063 -2066 26 30 0 0 chr13 31457292 31457325 -88287573 + AT_rich Low_complexity Low_complexity 1 33 0 2547 128 21 19 chr13 31457328 31457750 -88287148 - L1PB3 LINE L1 -7 6147 5725 602 285 84 57 chr13 31457984 31458182 -88286716 + L1MEd LINE L1 4380 4571 -1558 1700 172 44 0 chr13 31458182 31458479 -88286419 + AluJb SINE Alu 1 310 -2 602 285 84 57 chr13 31458479 31458910 -88285988 + L1MEd LINE L1 4571 4989 -1140 2475 71 7 0 chr13 31458910 31459219 -88285679 + AluY SINE Alu 1 311 0 602 285 84 57 chr13 31459219 31459327 -88285571 + L1MEd LINE L1 4989 5093 -1036 2843 148 41 36 chr13 31459327 31459677 -88285221 + L1MA4 LINE L1 5710 6066 -234 2016 121 10 3 chr13 31459677 31459975 -88284923 - AluSx SINE Alu -8 304 5 2843 148 41 36 chr13 31459975 31460212 -88284686 + L1MA4 LINE L1 6066 6300 0 602 285 84 57 chr13 31460212 31460273 -88284625 + L1MEd LINE L1 5093 5201 -928 339 181 236 0 chr13 31460337 31460409 -88284489 + Tigger5 DNA MER2_type 2234 2322 -1 21 0 0 0 chr13 31460446 31460467 -88284431 + AT_rich Low_complexity Low_complexity 1 21 0 215 278 133 11 chr13 31462128 31462218 -88282680 - MER91C DNA MER1_type -38 102 2 275 241 89 27 chr13 31463013 31463125 -88281773 + L1MC5 LINE L1 7799 7917 -44 1563 193 0 37 chr13 31463832 31464128 -88280770 - AluJb SINE Alu -27 285 1 354 272 53 35 chr13 31464737 31464851 -88280047 - L2 LINE L2 -1 3271 3156 243 301 0 14 chr13 31465972 31466045 -88278853 + (TA)n Simple_repeat Simple_repeat 1 72 0 2149 178 47 34 chr13 31466047 31466514 -88278384 - MLT2B2 LTR ERVL -39 476 4 229 261 145 0 chr13 31467099 31467168 -88277730 + L2 LINE L2 3179 3257 -15 1770 151 13 20 chr13 31467415 31467713 -88277185 - AluSx SINE Alu -16 296 1 185 324 14 0 chr13 31468312 31468383 -88276515 - L2 LINE L2 -313 2959 2888 257 299 16 136 chr13 31468418 31468602 -88276296 + MER5B DNA MER1_type 10 171 -7 2441 68 0 3 chr13 31470250 31470557 -88274341 + AluY SINE Alu 1 306 -5 30 83 0 0 chr13 31470870 31470942 -88273956 + AT_rich Low_complexity Low_complexity 1 72 0 858 238 76 39 chr13 31471484 31471841 -88273057 + L1MC5 LINE L1 7166 7535 -426 502 151 0 43 chr13 31472681 31472774 -88272124 - FLAM_C SINE Alu -8 135 47 1714 108 13 0 chr13 31473000 31473231 -88271667 + AluSp SINE Alu 44 277 -36 195 114 0 0 chr13 31473240 31473275 -88271623 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 226 263 15 86 chr13 31473275 31473473 -88271425 - HAL1 LINE L1 -566 1941 1758 303 49 0 0 chr13 31473480 31473521 -88271377 + (TG)n Simple_repeat Simple_repeat 2 42 0 694 237 43 61 chr13 31473541 31473820 -88271078 - HAL1 LINE L1 -1446 1061 788 1084 259 171 36 chr13 31473825 31474380 -88270518 - HAL1 LINE L1 -1637 870 241 293 195 0 6 chr13 31474389 31474452 -88270446 - FLAM_A SINE Alu -7 126 75 2190 95 0 10 chr13 31474941 31475237 -88269661 + AluSx SINE Alu 1 293 -19 911 186 54 14 chr13 31475388 31475609 -88269289 - MER20B DNA MER1_type -1 782 553 1789 221 93 41 chr13 31475856 31476417 -88268481 - L1ME2 LINE L1 -121 6043 5454 2001 113 28 7 chr13 31476618 31476909 -88267989 - AluSx SINE Alu -15 297 1 2154 122 3 0 chr13 31476916 31477220 -88267678 - AluSp SINE Alu -8 305 1 22 35 0 0 chr13 31477422 31477451 -88267447 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 31477681 31477725 -88267173 + AT_rich Low_complexity Low_complexity 1 44 0 197 271 224 28 chr13 31478144 31478251 -88266647 + L2 LINE L2 3138 3265 -7 2195 103 0 3 chr13 31478432 31478722 -88266176 + AluY SINE Alu 1 289 -22 1698 167 21 0 chr13 31479258 31479540 -88265358 - AluJo SINE Alu -24 288 1 1712 154 28 18 chr13 31480102 31480387 -88264511 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 31481280 31481301 -88263597 + AT_rich Low_complexity Low_complexity 1 21 0 600 203 42 0 chr13 31483047 31483165 -88261733 + MER58B DNA MER1_type 216 338 -3 399 296 59 7 chr13 31483178 31483313 -88261585 - MIR SINE MIR -112 150 9 379 216 207 0 chr13 31483362 31483473 -88261425 + MER104 DNA Tc2 47 180 0 202 222 0 0 chr13 31484773 31484809 -88260089 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 272 248 96 25 chr13 31484821 31485019 -88259879 - L1ME3A LINE L1 -220 5950 5739 726 267 11 11 chr13 31485143 31485319 -88259579 - MER5B DNA MER1_type -1 177 2 307 275 162 6 chr13 31485320 31485557 -88259341 - L1ME3A LINE L1 -515 5649 5367 243 0 0 0 chr13 31486016 31486043 -88258855 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 31487259 31487291 -88257607 + AT_rich Low_complexity Low_complexity 1 32 0 1202 193 106 23 chr13 31491324 31491588 -88253310 - AluJo SINE Alu -16 286 1 2029 75 8 8 chr13 31492353 31492620 -88252278 - AluSg1 SINE Alu -9 300 34 30 69 0 0 chr13 31493271 31493329 -88251569 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 31493531 31493568 -88251330 + AT_rich Low_complexity Low_complexity 1 37 0 757 274 102 6 chr13 31493678 31494021 -88250877 - L1ME4a LINE L1 -264 5857 5482 387 253 140 26 chr13 31494077 31494375 -88250523 - L1ME4a LINE L1 -738 5426 5086 380 300 40 25 chr13 31494413 31494575 -88250323 + MER5A DNA MER1_type 1 179 -10 386 329 75 32 chr13 31494592 31494872 -88250026 - L1ME4a LINE L1 -1125 5021 4730 207 186 0 0 chr13 31495197 31495240 -88249658 + (CA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr13 31495394 31495418 -88249480 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 31495728 31495756 -88249142 + AT_rich Low_complexity Low_complexity 1 28 0 601 287 111 9 chr13 31497063 31497279 -88247619 - MIR SINE MIR -21 241 4 2024 133 7 3 chr13 31497776 31498070 -88246828 - AluSx SINE Alu -17 295 1 263 86 0 0 chr13 31498086 31498121 -88246777 - U2 snRNA snRNA -153 35 1 316 293 96 30 chr13 31498434 31498601 -88246297 - L1ME4a LINE L1 -1726 4420 4243 1540 179 51 4 chr13 31499292 31499565 -88245333 - AluJo SINE Alu -24 288 3 2289 95 0 0 chr13 31499596 31499927 -88244971 + AluSx SINE Alu 1 331 0 21 0 0 0 chr13 31501022 31501043 -88243855 + AT_rich Low_complexity Low_complexity 1 21 0 271 171 43 29 chr13 31501117 31501187 -88243711 - L1ME4a LINE L1 -201 5920 5850 379 234 186 14 chr13 31501245 31501390 -88243508 + MIR SINE MIR 67 236 -26 2184 188 14 55 chr13 31501454 31501960 -88242938 + MER66B LTR ERV1 2 486 0 541 287 120 29 chr13 31501965 31502359 -88242539 - L1ME4a LINE L1 -357 5764 5321 256 212 66 88 chr13 31502839 31502976 -88241922 - L1 LINE L1 -1107 5039 4906 22 35 0 0 chr13 31503004 31503033 -88241865 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr13 31503280 31503324 -88241574 + AT_rich Low_complexity Low_complexity 1 44 0 2093 108 26 23 chr13 31504585 31504890 -88240008 - AluSx SINE Alu -6 306 1 2025 130 0 0 chr13 31504981 31505258 -88239640 - AluSx SINE Alu -35 277 1 229 246 16 16 chr13 31505350 31505411 -88239487 + (TATG)n Simple_repeat Simple_repeat 2 62 0 602 269 64 6 chr13 31505467 31505638 -88239260 - MIR SINE MIR -57 205 25 25 0 0 0 chr13 31506032 31506057 -88238841 + AT_rich Low_complexity Low_complexity 1 25 0 7951 90 35 26 chr13 31507490 31508715 -88236183 - MER11B LTR ERVK 0 1236 1 366 314 37 16 chr13 31508733 31508924 -88235974 + HAL1b LINE L1 395 589 -759 7015 64 13 53 chr13 31509225 31511307 -88233591 + SVA Other Other 1 1385 -1 23 0 0 0 chr13 31511313 31511336 -88233562 + AT_rich Low_complexity Low_complexity 1 23 0 339 293 94 45 chr13 31511560 31511756 -88233142 + L1ME LINE L1 3741 3926 -2220 2470 58 0 0 chr13 31511756 31512050 -88232848 - AluY SINE Alu -17 294 1 339 293 94 45 chr13 31512050 31512297 -88232601 + L1ME LINE L1 3926 4194 -1952 201 74 0 0 chr13 31512769 31512796 -88232102 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1775 180 0 0 chr13 31512799 31513083 -88231815 - AluJb SINE Alu -28 284 1 188 333 100 22 chr13 31513172 31513262 -88231636 - L2 LINE L2 -35 3237 3141 1676 164 3 33 chr13 31513393 31513698 -88231200 - AluSx SINE Alu -16 296 1 350 233 98 30 chr13 31513905 31514038 -88230860 + L1ME LINE L1 5536 5677 -444 366 263 12 0 chr13 31514093 31514173 -88230725 + Tigger3(Golem) DNA MER2_type 2 82 -2947 193 0 94 0 chr13 31514199 31514231 -88230667 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8482 49 5 222 chr13 31514236 31515979 -88228919 - SVA Other Other -1 1385 21 1684 137 59 0 chr13 31515983 31516253 -88228645 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 286 287 58 0 chr13 31516537 31516624 -88228274 - LTR50 LTR ERVL -703 92 1 337 178 117 84 chr13 31516831 31517023 -88227875 + HAL1b LINE L1 1163 6120 -1 485 247 56 28 chr13 31517480 31517658 -88227240 - L1MC5 LINE L1 -50 7980 7798 1250 170 32 36 chr13 31517717 31517970 -88226928 - AluJo SINE Alu -12 300 49 2349 246 127 51 chr13 31517978 31518172 -88226726 - L1MC5 LINE L1 -385 7645 7467 1855 149 16 3 chr13 31518172 31518480 -88226418 - AluJb SINE Alu 0 312 1 2349 246 127 51 chr13 31518480 31520199 -88224699 - L1MC5 LINE L1 -563 7467 5550 445 259 18 24 chr13 31520196 31520366 -88224532 - L1MC5 LINE L1 -3742 2473 2305 * 754 200 39 19 chr13 31520366 31520521 -88224377 + FRAM SINE Alu 1 155 -21 29 0 0 0 chr13 31520522 31520551 -88224347 + AT_rich Low_complexity Low_complexity 1 29 0 461 158 110 16 chr13 31520605 31520732 -88224166 - L1MC5 LINE L1 -4078 2318 2180 2019 251 85 50 chr13 31520788 31521933 -88222965 - L1MC5 LINE L1 -4370 2026 842 1121 265 78 52 chr13 31521933 31522469 -88222429 - L1MC5 LINE L1 -5825 571 22 9634 87 5 4 chr13 31522547 31524673 -88220225 - L1PA8 LINE L1 -18 6154 4027 348 278 126 63 chr13 31524963 31525186 -88219712 + L2 LINE L2 2962 3198 -115 24 0 0 0 chr13 31525521 31525545 -88219353 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 31526294 31526318 -88218580 + AT_rich Low_complexity Low_complexity 1 24 0 264 30 0 0 chr13 31527586 31527619 -88217279 + (CA)n Simple_repeat Simple_repeat 2 34 0 2024 128 3 0 chr13 31527623 31527911 -88216987 - AluSx SINE Alu -7 305 17 553 271 139 28 chr13 31528053 31528456 -88216442 - MLT1J2 LTR MaLR -2 444 1 24 91 0 0 chr13 31528626 31528692 -88216206 + AT_rich Low_complexity Low_complexity 1 66 0 234 200 42 42 chr13 31529467 31529562 -88215336 - L1MDa LINE L1 -3998 2217 2123 324 340 52 37 chr13 31529571 31529762 -88215136 - L1MDa LINE L1 -4273 2123 1930 554 322 57 13 chr13 31529848 31530326 -88214572 - L1MDa LINE L1 -4640 1756 1258 597 325 43 9 chr13 31531536 31531881 -88213017 - L1ME3A LINE L1 -219 5951 5595 512 233 42 130 chr13 31532223 31532276 -88212622 - L1 LINE L1 -942 5204 5148 2110 114 0 7 chr13 31532276 31532575 -88212323 - AluSx SINE Alu -15 297 1 512 233 42 130 chr13 31532575 31532852 -88212046 - L1 LINE L1 -998 5148 4903 339 269 171 17 chr13 31533744 31533978 -88210920 - HAL1 LINE L1 -910 1597 1328 24 32 0 0 chr13 31535078 31535109 -88209789 + AT_rich Low_complexity Low_complexity 1 31 0 387 0 0 0 chr13 31535301 31535344 -88209554 + (TG)n Simple_repeat Simple_repeat 2 44 0 722 233 33 74 chr13 31536793 31537063 -88207835 + MIR SINE MIR 3 261 -1 30 27 0 0 chr13 31537565 31537602 -88207296 + AT_rich Low_complexity Low_complexity 1 37 0 760 298 4 26 chr13 31537659 31537887 -88207011 + MIR SINE MIR 12 234 -28 1781 164 42 8 chr13 31539116 31539469 -88205429 - MLT1A1 LTR MaLR 0 365 1 3185 174 24 35 chr13 31539889 31540549 -88204349 + MER82 DNA MER2_type 1 653 0 904 80 0 0 chr13 31541094 31541207 -88203691 + AluSg/x SINE Alu 186 298 -11 23 68 0 0 chr13 31543065 31543109 -88201789 + AT_rich Low_complexity Low_complexity 1 44 0 292 341 56 8 chr13 31543131 31543257 -88201641 - L2 LINE L2 -4 3268 3137 2180 100 0 0 chr13 31544162 31544443 -88200455 - AluSx SINE Alu -31 281 1 351 0 0 0 chr13 31544449 31544488 -88200410 + (TG)n Simple_repeat Simple_repeat 2 40 0 5635 115 40 7 chr13 31544493 31545460 -88199438 - L1PA15 LINE L1 -20 6145 5151 1487 117 23 39 chr13 31545760 31546017 -88198881 + Tigger7 DNA MER2_type 2239 2491 0 288 361 107 50 chr13 31546017 31546355 -88198543 - L2 LINE L2 -6 3266 2910 415 195 11 17 chr13 31546426 31546534 -88198364 - AluJb SINE Alu -112 190 122 335 320 157 28 chr13 31547606 31547931 -88196967 + L2 LINE L2 2424 2790 -524 576 306 73 7 chr13 31548203 31548422 -88196476 + MIR SINE MIR 33 262 0 276 313 12 12 chr13 31548485 31548565 -88196333 + L2 LINE L2 3220 3299 -14 243 179 0 0 chr13 31549371 31549438 -88195460 + T-rich Low_complexity Low_complexity 1 67 0 2054 108 0 26 chr13 31550440 31550745 -88194153 + AluSx SINE Alu 1 297 -15 212 184 0 0 chr13 31551646 31551684 -88193214 + T-rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 31552736 31552758 -88192140 + AT_rich Low_complexity Low_complexity 1 22 0 2364 49 18 0 chr13 31553568 31553854 -88191044 - AluY SINE Alu -20 291 1 302 283 117 7 chr13 31554570 31554715 -88190183 + L1MC4a LINE L1 5735 5895 -1913 4551 118 34 10 chr13 31554944 31555731 -88189167 - L1PA16 LINE L1 -2 6164 5321 1305 270 73 74 chr13 31556719 31557039 -88187859 - L2 LINE L2 -423 2891 2572 576 168 0 18 chr13 31557039 31557152 -88187746 - HY1 scRNA scRNA -1 111 1 1305 270 73 74 chr13 31557152 31557547 -88187351 - L2 LINE L2 -742 2572 2177 476 289 34 44 chr13 31557562 31557766 -88187132 - L2 LINE L2 -20 3293 3092 24 53 0 0 chr13 31557864 31557902 -88186996 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 31558211 31558240 -88186658 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 31558288 31558309 -88186589 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 238 167 17 17 chr13 31558451 31558511 -88186387 + T-rich Low_complexity Low_complexity 5 64 0 1825 143 7 0 chr13 31559194 31559497 -88185401 - AluSx SINE Alu 0 308 4 191 342 154 0 chr13 31559648 31559765 -88185133 - L3 LINE CR1 -11 1566 1432 21 57 0 0 chr13 31560265 31560300 -88184598 + AT_rich Low_complexity Low_complexity 1 35 0 349 310 29 56 chr13 31560670 31561011 -88183887 + L1M4 LINE L1 3809 4140 -2006 1638 140 20 98 chr13 31561687 31562093 -88182805 - MLT1A2 LTR MaLR 0 374 1 2222 106 13 0 chr13 31562116 31562419 -88182479 + AluSx SINE Alu 4 310 -2 2168 70 0 70 chr13 31562419 31562734 -88182164 + AluY SINE Alu 1 294 -17 250 292 162 26 chr13 31565566 31565720 -88179178 - L3b LINE CR1 -139 1444 1270 246 244 171 0 chr13 31565893 31565975 -88178923 - L2 LINE L2 -17 3296 3201 273 303 175 52 chr13 31566345 31566556 -88178342 - L2 LINE L2 -706 2608 2372 1985 136 3 7 chr13 31567406 31567701 -88177197 - AluSx SINE Alu -18 294 1 198 0 0 0 chr13 31568696 31568718 -88176180 + (T)n Simple_repeat Simple_repeat 1 22 0 222 118 0 0 chr13 31570938 31570972 -88173926 + (T)n Simple_repeat Simple_repeat 1 34 0 668 243 43 51 chr13 31571911 31572166 -88172732 - L2 LINE L2 0 3313 3061 968 275 96 8 chr13 31572173 31572759 -88172139 - L1MEc LINE L1 -3692 2848 2252 482 271 103 47 chr13 31572884 31573259 -88171639 - L1MEc LINE L1 -4812 1774 1333 1888 118 43 11 chr13 31573259 31573539 -88171359 + AluSx SINE Alu 7 295 -17 482 271 103 47 chr13 31573539 31573645 -88171253 - L1MEc LINE L1 -5253 1333 1234 1124 317 66 22 chr13 31574047 31574706 -88170192 - L2 LINE L2 -231 3082 2387 397 329 176 10 chr13 31574933 31575246 -88169652 + L2 LINE L2 2329 2693 -621 192 77 0 0 chr13 31575273 31575299 -88169599 + (CAG)n Simple_repeat Simple_repeat 1 26 0 1756 143 61 7 chr13 31575758 31576052 -88168846 - AluSx SINE Alu -2 310 1 309 340 174 14 chr13 31576364 31576646 -88168252 - L1 LINE L1 -2275 3871 3545 531 169 123 8 chr13 31577237 31577367 -88167531 + MER104 DNA Tc2 27 171 -9 454 281 113 65 chr13 31577373 31577683 -88167215 - L1ME2 LINE L1 -332 5832 5508 448 311 113 40 chr13 31577714 31578218 -88166680 - L1ME2 LINE L1 -1170 4976 4436 583 296 180 11 chr13 31578390 31578863 -88166035 - L1 LINE L1 -2690 3456 2904 238 321 121 5 chr13 31579182 31579397 -88165501 - L1 LINE L1 -3595 2551 2312 1528 122 18 0 chr13 31580534 31580756 -88164142 - AluSx SINE Alu -18 292 67 458 103 0 0 chr13 31580789 31580857 -88164041 - AluSx SINE Alu -245 68 1 325 293 24 10 chr13 31581053 31581168 -88163730 + MIR SINE MIR 43 161 -63 1679 197 0 13 chr13 31581870 31582180 -88162718 - AluJo SINE Alu -4 308 3 452 257 46 4 chr13 31583538 31583725 -88161173 + MIR SINE MIR 1 259 -3 1232 215 158 48 chr13 31583737 31584179 -88160719 - L2 LINE L2 -419 2895 2405 1963 129 11 7 chr13 31585656 31585943 -88158955 - AluJo SINE Alu -14 298 11 489 273 195 0 chr13 31586190 31586344 -88158554 + MER5A DNA MER1_type 6 189 0 633 291 94 5 chr13 31586492 31586695 -88158203 - MIR SINE MIR -14 248 28 194 289 0 0 chr13 31587021 31587066 -88157832 + L2 LINE L2 3261 3305 -8 2022 261 65 35 chr13 31587112 31587383 -88157515 + L2 LINE L2 2329 2590 -723 2012 138 48 75 chr13 31587383 31587782 -88157116 - MLT1B LTR MaLR -2 388 1 2022 261 65 35 chr13 31587782 31588459 -88156439 + L2 LINE L2 2590 3313 0 353 297 18 27 chr13 31588459 31588570 -88156328 - MIR SINE MIR -63 145 36 2230 110 0 10 chr13 31588684 31588985 -88155913 - AluSp SINE Alu -15 298 1 28 61 0 0 chr13 31589145 31589194 -88155704 + AT_rich Low_complexity Low_complexity 1 49 0 842 209 221 8 chr13 31589318 31589571 -88155327 - HAL1 LINE L1 -607 1900 1594 407 256 23 16 chr13 31591658 31591787 -88153111 + L1ME4a LINE L1 5725 5854 -267 332 197 15 0 chr13 31591795 31591861 -88153037 - MER116 DNA Mariner -12 68 2 400 173 90 0 chr13 31591956 31592048 -88152850 - MIR SINE MIR -49 213 115 2419 98 0 0 chr13 31592634 31592941 -88151957 + AluSx SINE Alu 1 307 -5 468 78 31 0 chr13 31593437 31593501 -88151397 + L1MB8 LINE L1 6104 6169 -9 223 197 0 30 chr13 31593502 31593568 -88151330 + (TA)n Simple_repeat Simple_repeat 1 64 0 748 309 70 25 chr13 31593641 31594169 -88150729 + L1ME2 LINE L1 4483 5034 -1112 2534 66 0 0 chr13 31594174 31594476 -88150422 + AluY SINE Alu 1 302 -9 1189 172 29 10 chr13 31594480 31594689 -88150209 + AluJb SINE Alu 86 298 -14 952 270 105 6 chr13 31594690 31595318 -88149580 + L1ME2 LINE L1 5036 5722 -448 344 204 59 22 chr13 31595330 31595447 -88149451 + L1ME2 LINE L1 5844 5962 -208 226 220 0 0 chr13 31595470 31595520 -88149378 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 3674 147 22 48 chr13 31596360 31597482 -88147416 + L1MA9 LINE L1 4676 5793 -519 242 202 47 8 chr13 31597485 31597614 -88147284 + (TA)n Simple_repeat Simple_repeat 1 134 0 3127 138 38 4 chr13 31597625 31598132 -88146766 + L1MA9 LINE L1 5789 6312 0 321 100 0 0 chr13 31598293 31598343 -88146555 + (TC)n Simple_repeat Simple_repeat 2 51 0 543 30 69 20 chr13 31599578 31599679 -88145219 + GA-rich Low_complexity Low_complexity 2 107 0 1703 74 0 5 chr13 31599882 31600097 -88144801 + AluY SINE Alu 83 296 -15 281 317 20 0 chr13 31600121 31600222 -88144676 + MIR3 SINE MIR 77 179 -29 495 222 152 33 chr13 31601011 31601248 -88143650 - MLT1L LTR MaLR -4 597 349 225 0 0 0 chr13 31601287 31601312 -88143586 + (TG)n Simple_repeat Simple_repeat 2 26 0 3774 183 105 15 chr13 31602414 31602746 -88142152 - L1MB7 LINE L1 -30 6154 5853 2255 194 48 34 chr13 31602746 31603141 -88141757 - MLT1D LTR MaLR 0 505 100 1312 196 45 31 chr13 31603141 31603427 -88141471 + AluJb SINE Alu 1 290 -22 2255 194 48 34 chr13 31603427 31603527 -88141371 - MLT1D LTR MaLR -405 100 3 3774 183 105 15 chr13 31603527 31603722 -88141176 - L1MB7 LINE L1 -331 5853 5677 195 42 0 0 chr13 31603722 31603746 -88141152 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1944 61 20 4 chr13 31603746 31603991 -88140907 - AluY SINE Alu -32 279 31 3774 183 105 15 chr13 31603991 31604436 -88140462 - L1MB7 LINE L1 -506 5678 5093 2220 114 10 3 chr13 31604527 31604834 -88140064 + AluSc SINE Alu 1 309 0 347 167 50 0 chr13 31606972 31607032 -88137866 - U6 snRNA snRNA -44 63 1 671 289 72 30 chr13 31607101 31607426 -88137472 + L2 LINE L2 2692 3022 -291 1267 167 83 34 chr13 31607426 31607690 -88137208 + AluJo SINE Alu 1 277 -35 222 62 0 0 chr13 31607695 31607727 -88137171 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4235 127 51 9 chr13 31607799 31608466 -88136432 - L1PA16 LINE L1 0 6166 5472 412 316 120 45 chr13 31608651 31608917 -88135981 + L1MA9 LINE L1 1493 1778 -5390 5394 179 43 46 chr13 31609001 31609492 -88135406 + L1MA9 LINE L1 3131 3622 -3711 1756 89 31 9 chr13 31609492 31609716 -88135182 + MER30 DNA MER1_type 2 230 0 5394 179 43 46 chr13 31609716 31611302 -88133596 + L1MA9 LINE L1 3622 5211 -2122 2192 82 67 0 chr13 31611302 31611584 -88133314 - AluSc SINE Alu -8 301 1 5394 179 43 46 chr13 31611584 31612848 -88132050 + L1MA9 LINE L1 5211 7214 -119 2009 118 14 0 chr13 31612848 31613166 -88131732 - AluSq SINE Alu 0 322 1 5394 179 43 46 chr13 31613166 31613286 -88131612 + L1MA9 LINE L1 7214 7333 0 183 42 0 0 chr13 31613567 31613591 -88131307 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 28 0 0 0 chr13 31613651 31613679 -88131219 + AT_rich Low_complexity Low_complexity 1 28 0 262 324 68 34 chr13 31613716 31613892 -88131006 - MIR SINE MIR -61 201 20 2187 111 3 10 chr13 31613957 31614255 -88130643 - AluSq SINE Alu -13 300 5 247 215 75 54 chr13 31614270 31614363 -88130535 - MARNA DNA Mariner -374 212 118 2214 92 3 30 chr13 31614461 31614764 -88130134 + AluSg SINE Alu 1 295 -15 241 0 0 0 chr13 31615762 31615789 -88129109 - AluY SINE Alu -257 42 16 676 198 64 43 chr13 31616131 31616318 -88128580 - MIR SINE MIR -2 260 70 207 146 0 0 chr13 31616409 31616450 -88128448 + (TG)n Simple_repeat Simple_repeat 1 41 0 287 194 167 111 chr13 31616456 31616564 -88128334 + L2 LINE L2 3156 3269 -3 413 209 22 14 chr13 31617235 31617374 -88127524 + (TATATG)n Simple_repeat Simple_repeat 1 140 0 * 765 189 0 0 chr13 31617340 31617509 -88127389 + (TG)n Simple_repeat Simple_repeat 2 170 0 632 210 115 0 chr13 31618162 31618319 -88126579 + MER104 DNA MER2_type 5 179 -1 196 289 75 44 chr13 31618415 31618574 -88126324 + L2 LINE L2 2890 3053 -219 453 112 11 56 chr13 31618858 31618947 -88125951 - L1MA10 LINE L1 0 6334 6250 1233 129 78 0 chr13 31619049 31619242 -88125656 - MER2 DNA MER2_type -135 210 3 3291 144 78 93 chr13 31619242 31619773 -88125125 + LTR8 LTR ERV1 1 521 -170 2185 132 0 0 chr13 31619773 31620083 -88124815 + AluSx SINE Alu 3 312 0 3291 144 78 93 chr13 31620083 31620252 -88124646 + LTR8 LTR ERV1 521 691 0 2986 146 111 49 chr13 31620252 31620821 -88124077 + HUERS-P1 LTR ERV1 1 533 -5730 321 68 0 0 chr13 31620821 31620865 -88124033 + (TG)n Simple_repeat Simple_repeat 1 44 0 2986 146 111 49 chr13 31620865 31621389 -88123509 + HUERS-P1 LTR ERV1 533 1246 -5017 1168 158 8 66 chr13 31621455 31621696 -88123202 - LTR8 LTR ERV1 -460 231 5 236 243 114 0 chr13 31621700 31621770 -88123128 - L1MA10 LINE L1 -88 6246 6169 2294 91 7 3 chr13 31621937 31622233 -88122665 + AluSq SINE Alu 1 297 -16 2034 103 156 16 chr13 31622758 31623264 -88121634 - MER4B LTR ERV1 0 694 1 530 267 188 19 chr13 31624269 31624655 -88120243 - L2 LINE L2 -49 3264 2770 2830 254 67 18 chr13 31624726 31625691 -88119207 - L1ME3A LINE L1 -5 6234 5219 5673 230 41 26 chr13 31625733 31625795 -88119103 - L1MEc LINE L1 -2489 3726 3666 2061 143 3 3 chr13 31625795 31626102 -88118796 - AluSx SINE Alu -1 311 5 5673 230 41 26 chr13 31626102 31627901 -88116997 - L1MEc LINE L1 -2549 3666 1881 745 141 16 0 chr13 31628054 31628182 -88116716 + HSMAR2 DNA Mariner 2 131 -1171 * 5941 139 21 12 chr13 31628179 31629130 -88115768 + HSMAR2 DNA Mariner 343 1302 0 350 310 121 41 chr13 31629306 31629596 -88115302 + L2 LINE L2 2059 2371 -943 1068 118 27 43 chr13 31629853 31630040 -88114858 + MER20 DNA MER1_type 36 219 0 444 245 7 53 chr13 31630053 31630151 -88114747 - MER69 DNA AcHobo -1 2525 2435 2196 117 0 3 chr13 31630151 31630460 -88114438 - AluSx SINE Alu -4 308 1 444 245 7 53 chr13 31630460 31630512 -88114386 - MER69 DNA AcHobo -91 2435 2382 * 2031 172 5 33 chr13 31630477 31630844 -88114054 - MLT1A1 LTR MaLR -8 357 1 363 169 0 0 chr13 31631016 31631075 -88113823 - MER69 DNA AcHobo -2467 59 1 279 224 0 0 chr13 31631183 31631259 -88113639 + (TG)n Simple_repeat Simple_repeat 2 77 0 1859 163 7 0 chr13 31633045 31633346 -88111552 - AluSx SINE Alu -9 303 1 540 208 24 24 chr13 31633454 31633614 -88111284 - MER5A DNA MER1_type -25 153 3 2000 133 3 23 chr13 31634180 31634518 -88110380 - AluSx SINE Alu 0 312 1 210 261 0 0 chr13 31635603 31635649 -88109249 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 1865 131 68 18 chr13 31635659 31635996 -88108902 + MER46B DNA MER2_type 2 230 -6 294 73 0 0 chr13 31635998 31636039 -88108859 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr13 31636074 31636098 -88108800 + (CA)n Simple_repeat Simple_repeat 1 24 0 1791 250 110 20 chr13 31636189 31636733 -88108165 + MLT1E LTR MaLR 1 593 0 2672 120 5 10 chr13 31636736 31637144 -88107754 - MER65A LTR ERV1 0 445 40 1256 87 46 25 chr13 31637158 31637354 -88107544 - MSTA LTR MaLR -228 200 1 240 154 0 0 chr13 31637647 31637686 -88107212 - MER65B LTR ERV1 -492 39 1 2125 129 7 7 chr13 31638054 31638364 -88106534 - AluSp SINE Alu -3 310 1 1736 162 7 33 chr13 31638573 31638875 -88106023 + AluJo SINE Alu 6 299 -13 533 324 45 11 chr13 31638976 31639293 -88105605 - L2 LINE L2 -26 3246 2919 2000 93 3 64 chr13 31640751 31641062 -88103836 - AluSc SINE Alu -17 292 1 2258 116 3 7 chr13 31641404 31641714 -88103184 - AluSx SINE Alu -3 309 1 2273 110 0 3 chr13 31642304 31642605 -88102293 + AluSx SINE Alu 1 300 -12 281 228 22 11 chr13 31643954 31644046 -88100852 + MIR3 SINE MIR 109 201 -7 258 361 93 39 chr13 31645115 31645425 -88099473 - L2 LINE L2 -1 3271 2945 1057 273 54 97 chr13 31645565 31646217 -88098681 + L1MEd LINE L1 8 631 -5488 386 285 153 8 chr13 31646558 31646800 -88098098 + L2 LINE L2 1763 2039 -1275 525 339 56 28 chr13 31646872 31647194 -88097704 + L2 LINE L2 2584 2914 -400 578 242 0 17 chr13 31647275 31647395 -88097503 - FLAM_A SINE Alu -15 127 10 423 228 25 21 chr13 31647433 31647591 -88097307 + L1MC4 LINE L1 7017 7256 -632 432 0 0 0 chr13 31647591 31647639 -88097259 + (TA)n Simple_repeat Simple_repeat 2 49 0 351 0 0 0 chr13 31647656 31647695 -88097203 + (CA)n Simple_repeat Simple_repeat 2 40 0 315 0 0 0 chr13 31647756 31647791 -88097107 + (CA)n Simple_repeat Simple_repeat 2 36 0 336 236 69 34 chr13 31647848 31647971 -88096927 + L1MC4 LINE L1 6507 6644 -1191 1007 236 57 74 chr13 31647981 31648455 -88096443 + L1MC4 LINE L1 7265 7730 -312 724 232 72 55 chr13 31648516 31648861 -88096037 + L1MC4 LINE L1 7691 8041 -1 * 1171 221 26 7 chr13 31648837 31649108 -88095790 + L1MC3 LINE L1 6456 6731 -1054 2473 174 118 32 chr13 31649532 31650101 -88094797 + L1MC3 LINE L1 6716 7333 -452 585 220 66 16 chr13 31650080 31650262 -88094636 + L1MC3 LINE L1 7593 7783 -2 * 416 327 90 18 chr13 31650300 31650523 -88094375 + L2 LINE L2 3031 3269 -3 246 333 36 0 chr13 31650996 31651080 -88093818 + L2 LINE L2 3200 3286 -27 1905 143 34 47 chr13 31651080 31651464 -88093434 + MLT1B LTR MaLR 1 379 -11 211 302 62 0 chr13 31651613 31651709 -88093189 - MER5A DNA MER1_type -79 110 9 22 56 0 0 chr13 31652449 31652485 -88092413 + AT_rich Low_complexity Low_complexity 1 36 0 283 254 45 45 chr13 31654106 31654216 -88090682 + LTR67 LTR ERVL 340 449 -108 184 323 102 62 chr13 31654276 31654598 -88090300 + L2 LINE L2 1658 1992 -1322 237 247 68 14 chr13 31655077 31655150 -88089748 - MLT1J LTR MaLR -340 171 95 438 308 85 48 chr13 31655220 31655701 -88089197 + L2 LINE L2 2010 2508 -806 1935 220 24 15 chr13 31656023 31656198 -88088700 + MLT1C LTR MaLR 1 173 -294 1648 185 50 0 chr13 31656198 31656495 -88088403 + AluJo SINE Alu 1 312 0 1935 220 24 15 chr13 31656495 31656782 -88088116 + MLT1C LTR MaLR 173 467 0 237 302 32 0 chr13 31657063 31657126 -88087772 + L2 LINE L2 3111 3175 -97 183 318 30 0 chr13 31657969 31658035 -88086863 + L2 LINE L2 2992 3059 -213 2542 119 16 0 chr13 31658330 31658699 -88086199 - THE1C LTR MaLR 0 375 1 240 243 87 78 chr13 31658745 31658951 -88085947 + Tigger1 DNA MER2_type 879 1086 -1332 21 0 0 0 chr13 31659244 31659265 -88085633 + AT_rich Low_complexity Low_complexity 1 21 0 3067 78 45 2 chr13 31659305 31659731 -88085167 + MLT2A1 LTR ERVL 1 444 0 576 283 12 23 chr13 31659887 31660060 -88084838 - MER5B DNA MER1_type -7 171 1 1386 196 0 51 chr13 31660093 31660404 -88084494 + AluJo SINE Alu 1 295 -17 420 313 42 10 chr13 31661068 31661260 -88083638 + MIR SINE MIR 11 208 -54 8250 12 0 0 chr13 31661292 31662823 -88082075 - L1HS LINE L1 -1 6154 4624 493 335 28 9 chr13 31662844 31663059 -88081839 + L1MEc LINE L1 503 721 -6104 1562 203 25 30 chr13 31663447 31663811 -88081087 + MLT1A1 LTR MaLR 1 362 -3 1120 287 50 36 chr13 31663881 31664568 -88080330 + L1MEc LINE L1 1024 1660 -4882 1878 260 96 28 chr13 31664600 31665496 -88079402 + L1MEc LINE L1 1994 2950 -3875 336 283 41 7 chr13 31665512 31665657 -88079241 + L1MEc LINE L1 3781 3930 -2714 2166 124 10 0 chr13 31665661 31665967 -88078931 + AluSg SINE Alu 1 309 -1 1493 278 117 34 chr13 31666000 31666644 -88078254 + HERV16 LTR ERVL 596 1292 -3704 5384 242 36 58 chr13 31666804 31667442 -88077456 + HERV16 LTR ERVL 1592 2242 -2754 2251 96 3 0 chr13 31667442 31667733 -88077165 + AluSq SINE Alu 1 292 -21 5384 242 36 58 chr13 31667733 31667865 -88077033 + HERV16 LTR ERVL 2242 2375 -2621 1727 157 34 14 chr13 31667865 31668158 -88076740 + AluJo SINE Alu 5 303 -9 5384 242 36 58 chr13 31668158 31668924 -88075974 + HERV16 LTR ERVL 2375 3096 -1900 534 291 11 6 chr13 31669012 31669187 -88075711 + HERV16 LTR ERVL 5175 5350 -304 704 282 13 21 chr13 31669288 31669620 -88075278 + LTR16A LTR ERVL 18 401 -49 882 300 101 39 chr13 31669750 31670287 -88074611 + HERV16 LTR ERVL 2048 2617 -2379 1542 181 19 4 chr13 31670361 31670626 -88074272 + MLT1A1 LTR MaLR 1 269 -96 402 322 34 7 chr13 31670626 31670772 -88074126 + HERV16 LTR ERVL 2778 2927 -2837 2973 317 63 34 chr13 31670806 31672347 -88072551 + HERV16 LTR ERVL 3224 4808 -956 1422 296 35 19 chr13 31672409 31672892 -88072006 + LTR16C LTR ERVL 1 491 0 702 280 19 56 chr13 31675663 31675807 -88069091 - MIR SINE MIR 0 262 131 2499 88 3 0 chr13 31675807 31676115 -88068783 + AluSg SINE Alu 1 309 -1 702 280 19 56 chr13 31676115 31676238 -88068660 - MIR SINE MIR -131 131 5 217 205 0 0 chr13 31676259 31676298 -88068600 + (CCCA)n Simple_repeat Simple_repeat 4 42 0 267 308 26 0 chr13 31676831 31676909 -88067989 + MIR3 SINE MIR 108 187 -21 529 234 111 18 chr13 31677469 31677640 -88067258 - MIR SINE MIR 0 262 76 1870 127 51 0 chr13 31678081 31678357 -88066541 + AluSx SINE Alu 1 290 -22 876 110 79 6 chr13 31679000 31679164 -88065734 - L1MA6 LINE L1 -4 6296 6121 188 282 214 0 chr13 31679164 31679267 -88065631 + L3 LINE CR1 524 648 -929 28 29 0 0 chr13 31679334 31679369 -88065529 + AT_rich Low_complexity Low_complexity 1 35 0 589 269 115 61 chr13 31679459 31680144 -88064754 - L1MC5 LINE L1 -78 7883 7247 1617 166 26 62 chr13 31680782 31681089 -88063809 - AluJo SINE Alu -16 296 1 1566 174 113 64 chr13 31681267 31681674 -88063224 - MER51A LTR ERV1 0 634 208 1406 238 111 2 chr13 31682637 31683086 -88061812 - MER114 LTR ERV 0 648 151 1002 145 0 0 chr13 31683105 31683257 -88061641 - AluSg/x SINE Alu -12 300 149 2169 314 35 10 chr13 31683359 31684348 -88060550 - ERVL LTR ERVL -1412 4352 3292 1206 299 41 19 chr13 31684367 31684870 -88060028 - ERVL LTR ERVL -1913 3083 2666 576 321 38 52 chr13 31684904 31685465 -88059433 - ERVL LTR ERVL -2639 2357 1969 570 263 47 6 chr13 31685480 31685651 -88059247 + L1MD2 LINE L1 6165 6342 -17 204 67 0 0 chr13 31685766 31685796 -88059102 + (CA)n Simple_repeat Simple_repeat 1 30 0 241 308 87 19 chr13 31687706 31687810 -88057088 - L2 LINE L2 -26 3246 3136 207 0 0 0 chr13 31688024 31688047 -88056851 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr13 31688144 31688173 -88056725 + AT_rich Low_complexity Low_complexity 1 29 0 334 365 48 8 chr13 31688201 31688327 -88056571 + L2 LINE L2 3138 3268 -4 1142 251 30 14 chr13 31688398 31688693 -88056205 - MLT1I LTR MaLR -3 406 107 574 182 0 15 chr13 31688925 31689057 -88055841 + CT-rich Low_complexity Low_complexity 2 131 0 1448 172 0 38 chr13 31689063 31689330 -88055568 - AluJo SINE Alu -55 257 1 222 150 0 0 chr13 31689663 31689703 -88055195 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 295 169 185 0 chr13 31690041 31690106 -88054792 + MLT1C LTR MaLR 6 82 -385 3595 136 23 59 chr13 31690107 31690756 -88054142 + L1MA7 LINE L1 5656 6281 -10 496 171 24 81 chr13 31690775 31690898 -88054000 + MLT1C LTR MaLR 67 182 -285 357 62 0 0 chr13 31690903 31690951 -88053947 + (CA)n Simple_repeat Simple_repeat 2 49 0 415 206 11 11 chr13 31691026 31691118 -88053780 + MLT1C LTR MaLR 376 467 0 1085 214 24 36 chr13 31691677 31691929 -88052969 - MIR SINE MIR -3 259 11 279 191 29 0 chr13 31691960 31692028 -88052870 + MER116 DNA Mariner 11 80 0 496 295 9 71 chr13 31692148 31692358 -88052540 + MIR SINE MIR 22 218 -44 2205 128 0 0 chr13 31693230 31693528 -88051370 + AluSx SINE Alu 1 298 -14 1887 201 66 43 chr13 31693632 31694120 -88050778 - MLT1D LTR MaLR -5 500 2 27 62 0 0 chr13 31694544 31694592 -88050306 + AT_rich Low_complexity Low_complexity 1 48 0 225 283 0 0 chr13 31694649 31694709 -88050189 - L1ME4a LINE L1 -88 6033 5974 551 284 148 42 chr13 31694755 31694989 -88049909 + L2 LINE L2 2841 3128 -185 1892 156 70 25 chr13 31694989 31695347 -88049551 - MLT1A2 LTR MaLR 0 374 1 551 284 148 42 chr13 31695347 31695471 -88049427 + L2 LINE L2 3128 3237 -76 303 307 10 10 chr13 31695834 31695935 -88048963 - MIR SINE MIR -74 134 34 1851 183 7 0 chr13 31697092 31697393 -88047505 - AluJo SINE Alu -9 303 1 718 275 160 47 chr13 31697400 31697843 -88047055 + MLT1H LTR MaLR 37 529 -20 336 237 59 44 chr13 31697851 31697986 -88046912 + MER65B LTR ERV1 1 137 -394 777 283 59 110 chr13 31698436 31698826 -88046072 + MLT1L LTR MaLR 110 584 -31 402 287 144 23 chr13 31698905 31699079 -88045819 + MIR3 SINE MIR 7 201 -7 2169 110 10 3 chr13 31700237 31700537 -88044361 - AluSq SINE Alu -11 302 1 240 111 0 0 chr13 31701073 31701118 -88043780 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 2096 115 3 3 chr13 31701369 31701679 -88043219 + AluSq SINE Alu 1 310 0 196 42 0 0 chr13 31701655 31701714 -88043184 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1193 238 161 43 chr13 31702676 31703167 -88041731 - MLT1H LTR MaLR 0 549 1 446 290 129 24 chr13 31705421 31705669 -88039229 - L1ME4a LINE L1 -297 5824 5551 397 219 39 28 chr13 31706260 31706438 -88038460 + (TA)n Simple_repeat Simple_repeat 1 180 0 217 143 44 11 chr13 31706532 31706623 -88038275 + (TA)n Simple_repeat Simple_repeat 1 94 0 207 132 75 0 chr13 31706640 31706693 -88038205 + (TA)n Simple_repeat Simple_repeat 1 57 0 720 170 89 0 chr13 31706699 31706811 -88038087 - FLAM_C SINE Alu -20 123 2 470 316 38 14 chr13 31707984 31708193 -88036705 - MIR SINE MIR -29 233 20 904 218 40 44 chr13 31708372 31708453 -88036445 - MIR SINE MIR -24 238 158 2106 191 8 11 chr13 31708453 31708819 -88036079 - MLT1A1 LTR MaLR 0 365 1 904 218 40 44 chr13 31708819 31708962 -88035936 - MIR SINE MIR -104 158 15 405 273 245 43 chr13 31708979 31709257 -88035641 - L2 LINE L2 -902 2412 2079 183 256 179 36 chr13 31709263 31709458 -88035440 + L2 LINE L2 2465 2687 -627 199 365 56 0 chr13 31710181 31710307 -88034591 + L2 LINE L2 2910 3042 -230 1004 232 76 108 chr13 31710390 31710957 -88033941 + MER34B LTR ERV1 1 542 0 296 347 0 0 chr13 31711026 31711098 -88033800 + L2 LINE L2 3201 3272 0 1721 175 0 14 chr13 31713795 31714087 -88030811 - AluJb SINE Alu -24 288 1 386 300 14 21 chr13 31714193 31714333 -88030565 + MER117 DNA MER1_type 1 139 -58 632 246 97 64 chr13 31715216 31715546 -88029352 - MLT1J LTR MaLR -8 503 163 458 305 37 21 chr13 31715884 31716074 -88028824 + LTR16C LTR ERVL 299 491 0 270 292 50 33 chr13 31716077 31716197 -88028701 - MLT1J LTR MaLR -354 157 36 1654 178 3 32 chr13 31716788 31717102 -88027796 + AluJo SINE Alu 5 309 -3 865 232 217 62 chr13 31717712 31718164 -88026734 - MLT1L LTR MaLR -5 610 89 398 293 115 0 chr13 31718183 31718340 -88026558 + MIR SINE MIR 88 262 0 423 259 127 71 chr13 31718862 31719059 -88025839 + MIR SINE MIR 47 254 -8 9293 233 63 24 chr13 31719142 31720188 -88024710 - L1ME1 LINE L1 -6 6658 5654 1455 201 27 7 chr13 31720188 31720482 -88024416 + AluJo SINE Alu 1 300 -12 9293 233 63 24 chr13 31720482 31721192 -88023706 - L1ME1 LINE L1 -1010 5654 4973 1899 159 21 0 chr13 31721192 31721482 -88023416 - AluJb SINE Alu -16 296 1 9293 233 63 24 chr13 31721482 31722173 -88022725 - L1ME1 LINE L1 -1691 4973 4310 1608 253 46 36 chr13 31722173 31722671 -88022227 + MLT1D LTR MaLR 1 503 -2 9293 233 63 24 chr13 31722671 31723940 -88020958 - L1ME1 LINE L1 -2354 4310 2769 7628 49 7 3 chr13 31723940 31725612 -88019286 - L1PA7 LINE L1 -2 6152 4477 188 133 0 0 chr13 31726113 31726143 -88018755 - MIR SINE MIR -109 153 124 215 304 0 0 chr13 31727280 31727326 -88017572 + L2 LINE L2 3161 3206 -66 411 199 62 85 chr13 31727722 31727898 -88017000 - MER53 DNA DNA 0 189 18 189 333 0 0 chr13 31727909 31727963 -88016935 + MIR SINE MIR 93 146 -62 294 231 15 15 chr13 31728662 31728727 -88016171 - L2 LINE L2 -2 3270 3206 4309 79 70 0 chr13 31728741 31729325 -88015573 - L1PB1 LINE L1 -5 6146 5522 353 77 0 0 chr13 31729573 31729625 -88015273 + FAM SINE Alu 122 173 -2 209 298 60 48 chr13 31729926 31730010 -88014888 + L2 LINE L2 3143 3227 -45 323 328 106 16 chr13 31730118 31730307 -88014591 + MIR SINE MIR 23 228 -34 378 337 66 28 chr13 31731611 31731792 -88013106 + L2 LINE L2 2932 3119 -153 2121 241 30 35 chr13 31731917 31732493 -88012405 - L1ME1 LINE L1 -5688 854 282 611 266 60 22 chr13 31732520 31732704 -88012194 + MLT1L LTR MaLR 43 233 -382 235 221 84 63 chr13 31732731 31732826 -88012072 - MER5A DNA MER1_type -86 103 7 2183 119 0 7 chr13 31732878 31733180 -88011718 + AluSg SINE Alu 1 300 -10 682 272 109 18 chr13 31733190 31733473 -88011425 + MLT1L LTR MaLR 295 603 -12 198 0 0 0 chr13 31733596 31733618 -88011280 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 1120 241 16 4 chr13 31733854 31734103 -88010795 - MER112 DNA MER1_type -1 259 8 278 294 102 99 chr13 31734940 31735283 -88009615 + L2 LINE L2 2913 3256 -16 4823 177 27 29 chr13 31735327 31735894 -88009004 + L1MB3 LINE L1 4838 5405 -778 2096 129 3 0 chr13 31735894 31736188 -88008710 + AluSq SINE Alu 1 295 -18 4823 177 27 29 chr13 31736188 31736968 -88007930 + L1MB3 LINE L1 5405 6183 0 1739 127 35 0 chr13 31737933 31738192 -88006706 + AluSg SINE Alu 36 303 -7 231 241 0 0 chr13 31738299 31738353 -88006545 - MER5B DNA MER1_type -124 54 1 1847 272 118 41 chr13 31738376 31739716 -88005182 - L2 LINE L2 -42 3271 1825 1688 116 8 0 chr13 31739767 31740009 -88004889 - L1MB2 LINE L1 -125 6046 5803 483 33 0 0 chr13 31743134 31743195 -88001703 + (CA)n Simple_repeat Simple_repeat 2 62 0 195 258 318 0 chr13 31743308 31743374 -88001524 - MER5A DNA MER1_type -94 95 9 428 301 30 12 chr13 31744030 31744196 -88000702 - MIR SINE MIR -24 238 70 349 317 20 0 chr13 31744463 31744564 -88000334 + L2 LINE L2 3208 3310 -3 271 258 11 34 chr13 31745066 31745155 -87999743 + MER5A DNA MER1_type 97 183 -6 505 254 14 28 chr13 31745596 31745738 -87999160 - L2 LINE L2 0 3272 3133 396 125 0 0 chr13 31746109 31746173 -87998725 + (GA)n Simple_repeat Simple_repeat 1 64 0 1227 158 171 40 chr13 31746174 31746496 -87998402 - MLT1B LTR MaLR 0 390 27 1350 77 0 22 chr13 31746589 31746770 -87998128 - L1PB1 LINE L1 -1 6150 5974 2355 76 0 7 chr13 31748100 31748404 -87996494 + AluSq SINE Alu 1 302 -11 25 0 0 0 chr13 31748564 31748589 -87996309 + AT_rich Low_complexity Low_complexity 1 25 0 2417 57 17 0 chr13 31748849 31749146 -87995752 - AluY SINE Alu -9 302 1 455 249 37 69 chr13 31749296 31749485 -87995413 + MER5A DNA MER1_type 7 189 0 259 257 162 13 chr13 31749609 31749758 -87995140 - MIR3 SINE MIR -2 206 36 202 359 29 35 chr13 31750253 31750423 -87994475 + L3b LINE CR1 1317 1485 -98 288 363 14 7 chr13 31750550 31750696 -87994202 - ERVL LTR ERVL -765 4999 4853 1739 216 95 31 chr13 31751132 31751553 -87993345 - LTR16A LTR ERVL -2 448 1 1182 308 70 29 chr13 31752175 31752835 -87992063 - ERVL LTR ERVL -867 4787 4102 647 193 20 7 chr13 31752841 31752991 -87991907 + Charlie1 DNA MER1_type 2610 2761 0 342 0 0 0 chr13 31753386 31753424 -87991474 + (TG)n Simple_repeat Simple_repeat 2 39 0 2151 122 0 10 chr13 31753896 31754199 -87990699 + AluSx SINE Alu 1 300 -12 1023 186 41 23 chr13 31756407 31756627 -87988271 - L1MC1 LINE L1 -13 6320 6097 1375 188 16 8 chr13 31756627 31756808 -87988090 - AluJo SINE Alu -3 309 124 8163 21 5 0 chr13 31756808 31757768 -87987130 + L1PA3 LINE L1 5191 6154 -1 1375 188 16 8 chr13 31757768 31757842 -87987056 - AluJo SINE Alu -188 124 52 2347 138 30 51 chr13 31757875 31758309 -87986589 - L1MC1 LINE L1 -227 6106 5682 3079 139 24 6 chr13 31758313 31758808 -87986090 - L1MB3 LINE L1 -1 6182 5679 545 192 8 0 chr13 31758809 31758929 -87985969 + CT-rich Low_complexity Low_complexity 3 123 0 380 148 15 25 chr13 31758944 31759021 -87985877 - L1P5 LINE L1 -478 5676 5605 * 5433 187 50 31 chr13 31759016 31760012 -87984886 - L1MB3 LINE L1 -649 5695 4657 2521 46 3 3 chr13 31760012 31760316 -87984582 - AluY SINE Alu -7 304 1 5433 187 50 31 chr13 31760316 31761093 -87983805 - L1MB3 LINE L1 -1687 4657 3896 805 99 0 0 chr13 31761140 31761241 -87983657 - AluS SINE Alu -211 102 2 1387 247 63 18 chr13 31761272 31761699 -87983199 + LTR51 LTR ERV1 228 842 -81 325 226 75 82 chr13 31762285 31762444 -87982454 + MIR SINE MIR 105 262 0 250 333 11 11 chr13 31762511 31762601 -87982297 + MIR SINE MIR 20 109 -153 508 224 64 26 chr13 31762613 31762769 -87982129 - MER5A DNA MER1_type -21 168 7 218 169 231 0 chr13 31764169 31764234 -87980664 - L2 LINE L2 0 3272 3193 1615 115 77 4 chr13 31764367 31764602 -87980296 - L1PB3 LINE L1 0 6154 5903 193 133 0 0 chr13 31764660 31764690 -87980208 + MIR SINE MIR 158 187 -75 207 209 0 23 chr13 31764957 31765000 -87979898 + CT-rich Low_complexity Low_complexity 4 45 0 1421 134 17 26 chr13 31765992 31766090 -87978808 - MER30 DNA MER1_type 0 230 133 2392 106 0 0 chr13 31766090 31766393 -87978505 - AluSx SINE Alu -9 303 1 1421 134 17 26 chr13 31766393 31766526 -87978372 - MER30 DNA MER1_type -97 133 1 186 43 0 0 chr13 31766607 31766630 -87978268 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1901 94 4 0 chr13 31766940 31767185 -87977713 - AluSx SINE Alu -6 306 61 3908 148 6 16 chr13 31768205 31768849 -87976049 - L1MB3 LINE L1 0 6183 5546 2266 113 3 3 chr13 31768860 31769169 -87975729 - AluSx SINE Alu -3 309 1 1061 250 24 15 chr13 31770551 31770853 -87974045 + MLT2D LTR ERVL 66 366 -48 725 139 20 0 chr13 31770862 31771119 -87973779 + (TG)n Simple_repeat Simple_repeat 1 262 0 923 76 41 0 chr13 31771137 31771309 -87973589 + (TG)n Simple_repeat Simple_repeat 2 180 0 303 130 0 0 chr13 31771329 31771375 -87973523 + MLT2D LTR ERVL 473 518 -2 884 289 141 22 chr13 31771530 31771991 -87972907 - LTR33 LTR ERVL -4 517 2 681 155 84 39 chr13 31772583 31772738 -87972160 + MER96 DNA MER1_type? 14 175 0 318 26 0 0 chr13 31774177 31774216 -87970682 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr13 31774265 31774293 -87970605 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr13 31774412 31774465 -87970433 + AT_rich Low_complexity Low_complexity 1 53 0 198 291 25 25 chr13 31775266 31775345 -87969553 - MIR SINE MIR 0 262 184 2439 60 7 0 chr13 31775429 31775727 -87969171 + AluY SINE Alu 1 300 -11 537 271 91 50 chr13 31775780 31776136 -87968762 + L1ME3A LINE L1 5208 5579 -583 325 367 59 23 chr13 31776161 31776466 -87968432 + L1ME3A LINE L1 5625 5940 -230 304 160 0 0 chr13 31777140 31777190 -87967708 - L2 LINE L2 -2 3311 3262 909 337 104 15 chr13 31777190 31777572 -87967326 + L2 LINE L2 2202 2549 -765 1912 134 26 35 chr13 31777572 31777885 -87967013 - AluSx SINE Alu -2 310 1 909 337 104 15 chr13 31777885 31778215 -87966683 + L2 LINE L2 2549 2977 -337 422 276 78 0 chr13 31778258 31778374 -87966524 - L2 LINE L2 0 3313 3189 486 263 26 53 chr13 31778538 31778690 -87966208 + L2 LINE L2 3124 3271 -1 274 270 118 33 chr13 31778832 31778984 -87965914 - L2 LINE L2 -1605 1709 1545 762 216 34 6 chr13 31779064 31779240 -87965658 + MER33 DNA MER1_type 6 186 -138 3709 140 42 32 chr13 31779269 31779891 -87965007 + MER82 DNA MER2_type 25 652 -1 545 190 28 21 chr13 31779891 31780019 -87964879 + MER33 DNA MER1_type 231 359 -4 22 0 0 0 chr13 31782006 31782028 -87962870 + AT_rich Low_complexity Low_complexity 1 22 0 281 211 119 0 chr13 31782784 31782893 -87962005 - L1ME4a LINE L1 0 6121 6000 21 0 0 0 chr13 31783621 31783642 -87961256 + AT_rich Low_complexity Low_complexity 1 21 0 209 302 0 16 chr13 31783721 31783784 -87961114 - MIR3 SINE MIR -8 200 139 2395 180 40 4 chr13 31784102 31784552 -87960346 - MLT1C LTR MaLR 0 467 2 445 198 155 9 chr13 31784615 31784731 -87960167 - MIR SINE MIR -88 174 42 1129 255 81 15 chr13 31784768 31785365 -87959533 - L2 LINE L2 -18 3295 2328 282 242 0 16 chr13 31785573 31785635 -87959263 + L2 LINE L2 3210 3270 -2 1026 190 0 0 chr13 31785708 31785882 -87959016 + AluJo SINE Alu 122 295 -17 291 204 0 0 chr13 31785887 31785936 -87958962 + AluJo SINE Alu 127 175 -127 343 197 0 0 chr13 31787040 31787106 -87957792 - Alu SINE Alu 0 302 237 189 0 0 0 chr13 31787147 31787168 -87957730 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1657 167 0 57 chr13 31787171 31787470 -87957428 - AluJo SINE Alu -30 282 1 22 0 0 0 chr13 31787980 31788002 -87956896 + AT_rich Low_complexity Low_complexity 1 22 0 1230 217 20 23 chr13 31788321 31788443 -87956455 - L1MA4 LINE L1 -5 6295 6174 1740 139 66 11 chr13 31788443 31788871 -87956027 - AluSq SINE Alu 0 444 1 1230 217 20 23 chr13 31788871 31789051 -87955847 - L1MA4 LINE L1 -126 6174 5998 3468 288 176 24 chr13 31789318 31789469 -87955429 - L2 LINE L2 -2 3311 3184 4727 167 57 16 chr13 31789469 31790300 -87954598 - MER6 DNA MER2_type 0 865 1 3468 288 176 24 chr13 31790300 31791300 -87953598 - L2 LINE L2 -129 3184 2338 2636 156 30 26 chr13 31791300 31791730 -87953168 + Tigger2a DNA MER2_type 3 434 0 3468 288 176 24 chr13 31791730 31793064 -87951834 - L2 LINE L2 -975 2338 451 2119 142 0 0 chr13 31793074 31793376 -87951522 - AluSx SINE Alu -10 302 1 309 320 131 8 chr13 31793798 31794057 -87950841 - L2 LINE L2 -645 2669 2379 119 37 0 0 chr13 31794075 31794236 -87950662 + AT_rich Low_complexity Low_complexity 1 161 0 315 276 121 75 chr13 31794411 31794632 -87950266 - L1ME4a LINE L1 -233 5888 5646 951 196 28 0 chr13 31794632 31794811 -87950087 - L1MD1 LINE L1 0 6242 6059 315 276 121 75 chr13 31794811 31794911 -87949987 - L1ME4a LINE L1 -475 5646 5552 239 304 80 64 chr13 31795053 31795303 -87949595 + MLT1J1 LTR MaLR 58 311 -135 785 121 49 197 chr13 31795420 31795684 -87949214 + MLT1A1 LTR MaLR 1 225 -149 579 230 59 0 chr13 31795836 31795988 -87948910 + L2 LINE L2 2448 2608 -706 630 80 0 0 chr13 31796032 31796107 -87948791 + AluY SINE Alu 218 292 -19 1286 249 47 64 chr13 31796149 31796581 -87948317 + L2 LINE L2 2853 3278 -35 1908 209 96 24 chr13 31796581 31797049 -87947849 - MLT1D LTR MaLR -3 502 1 1286 249 47 64 chr13 31797049 31797085 -87947813 + L2 LINE L2 3278 3313 0 599 307 115 16 chr13 31797767 31798011 -87946887 + L3 LINE CR1 1301 1568 -9 285 306 41 27 chr13 31798057 31798204 -87946694 - LTR67 LTR ERVL 0 557 409 525 334 77 13 chr13 31798739 31799305 -87945593 - L1MD1 LINE L1 -755 5391 5176 227 155 14 113 chr13 31801111 31801182 -87943716 - HAL1 LINE L1 -121 2386 2323 455 216 97 15 chr13 31801217 31801351 -87943547 - HAL1 LINE L1 -314 2193 2049 1805 187 62 40 chr13 31801379 31801426 -87943472 - L1MCb LINE L1 -5015 1030 985 285 29 0 0 chr13 31801426 31801460 -87943438 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1805 187 62 40 chr13 31801460 31801834 -87943064 - L1MCb LINE L1 -5060 985 600 460 198 72 27 chr13 31804171 31804282 -87940616 - MER117 DNA MER1_type -3 194 79 927 311 83 11 chr13 31804344 31804788 -87940110 - L2 LINE L2 0 3313 2838 5241 141 21 27 chr13 31804794 31805229 -87939669 + L1MA8 LINE L1 5168 5604 -708 1933 164 0 16 chr13 31805229 31805541 -87939357 + AluJo SINE Alu 1 307 -5 5241 141 21 27 chr13 31805541 31806108 -87938790 + L1MA8 LINE L1 5604 6142 -170 2303 109 3 3 chr13 31806108 31806420 -87938478 - AluSx SINE Alu 0 312 1 5241 141 21 27 chr13 31806420 31806566 -87938332 + L1MA8 LINE L1 6142 6287 -25 180 0 0 0 chr13 31806567 31806587 -87938311 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 204 281 172 0 chr13 31806652 31806716 -87938182 - L2 LINE L2 0 3313 3239 2136 110 3 0 chr13 31807544 31807826 -87937072 + AluSx SINE Alu 1 283 -29 266 210 81 0 chr13 31808806 31808868 -87936030 - MIR SINE MIR -115 147 81 206 106 43 21 chr13 31809953 31810000 -87934898 + (CGGG)n Simple_repeat Simple_repeat 2 49 0 358 319 129 74 chr13 31810020 31810778 -87934120 + L1M2 LINE L1 471 1270 -5579 225 0 0 0 chr13 31813315 31813340 -87931558 + (TG)n Simple_repeat Simple_repeat 1 25 0 362 119 48 0 chr13 31813340 31813424 -87931474 + GA-rich Low_complexity Low_complexity 2 89 0 1216 282 175 10 chr13 31813832 31814445 -87930453 + L2 LINE L2 1954 2667 -647 2227 99 0 7 chr13 31815217 31815509 -87929389 + AluSq SINE Alu 1 290 -23 211 267 13 67 chr13 31816220 31816295 -87928603 + L2 LINE L2 2957 3027 -245 196 368 35 11 chr13 31816333 31816420 -87928478 + L2 LINE L2 3149 3237 -35 301 265 147 1 chr13 31816632 31816758 -87928140 - MLT1J2 LTR MaLR -223 227 99 337 330 168 21 chr13 31817481 31817766 -87927132 - L3 LINE CR1 -11 1566 1240 187 152 0 0 chr13 31817868 31817901 -87926997 - MIR SINE MIR -10 252 220 905 202 43 58 chr13 31818875 31819083 -87925815 - MER58A DNA MER1_type 0 224 20 709 242 144 28 chr13 31819246 31819531 -87925367 - L3 LINE CR1 -464 1113 796 266 250 37 56 chr13 31819867 31819975 -87924923 + MLT1H LTR MaLR 440 545 -4 303 222 56 0 chr13 31819982 31820054 -87924844 + HAL1 LINE L1 1268 1343 -1164 512 244 9 0 chr13 31820080 31820195 -87924703 - HERV16 LTR ERVL -3169 1827 1712 1465 320 53 18 chr13 31820218 31820881 -87924017 - HERV16 LTR ERVL -3539 1457 772 251 241 69 0 chr13 31820941 31820999 -87923899 - HERV16 LTR ERVL -4320 676 615 303 323 55 18 chr13 31821264 31821428 -87923470 - HERV16 LTR ERVL -4766 230 61 1844 247 33 20 chr13 31821448 31821906 -87922992 - LTR16B LTR ERVL 0 464 1 1278 259 154 22 chr13 31821906 31822490 -87922408 + HAL1 LINE L1 1531 2191 -316 429 213 213 62 chr13 31822492 31822717 -87922181 + HAL1 LINE L1 2235 2493 -14 22 88 0 0 chr13 31822718 31822775 -87922123 + AT_rich Low_complexity Low_complexity 1 57 0 194 348 37 31 chr13 31822826 31822987 -87921911 - L3 LINE CR1 -861 716 555 1489 199 65 70 chr13 31823199 31823244 -87921654 - MSTD LTR MaLR 0 396 352 2397 63 0 0 chr13 31823244 31823554 -87921344 - AluY SINE Alu 0 310 1 1489 199 65 70 chr13 31823554 31823905 -87920993 - MSTD LTR MaLR -44 352 1 842 306 15 6 chr13 31824414 31824750 -87920148 + HAL1 LINE L1 1032 1370 -1137 779 269 200 37 chr13 31824753 31825488 -87919410 + HAL1 LINE L1 1642 2496 -11 268 294 94 0 chr13 31825577 31825662 -87919236 - MIR SINE MIR -86 122 30 603 264 194 65 chr13 31825873 31826400 -87918498 - MLT1G1 LTR MaLR 0 595 1 279 341 83 30 chr13 31826428 31826560 -87918338 + L2 LINE L2 2953 3091 -181 230 288 121 79 chr13 31827070 31827285 -87917613 + L2 LINE L2 2837 3060 -253 250 262 12 36 chr13 31827942 31828026 -87916872 + LTR37B LTR ERV1 117 198 -270 * 297 259 12 12 chr13 31828015 31828100 -87916798 + LTR37A LTR ERV1 111 195 -231 797 203 32 60 chr13 31828175 31828426 -87916472 + L2 LINE L2 3065 3308 -5 495 227 53 0 chr13 31828505 31828637 -87916261 + MER112 DNA MER1_type 77 215 -45 489 125 50 0 chr13 31829954 31830074 -87914824 + (CA)n Simple_repeat Simple_repeat 2 127 0 245 157 0 59 chr13 31830179 31830230 -87914668 - MLT1K LTR MaLR -317 271 224 318 192 41 0 chr13 31830399 31830472 -87914426 + L1MB2 LINE L1 6096 6171 0 282 282 64 0 chr13 31830816 31830894 -87914004 + L2 LINE L2 3229 3311 -2 645 222 100 123 chr13 31831108 31831459 -87913439 + MLT1H LTR MaLR 1 343 -206 408 263 62 96 chr13 31832537 31832956 -87911942 - L1ME4a LINE L1 -4 6117 5713 193 196 0 22 chr13 31832956 31833002 -87911896 + L2 LINE L2 3269 3313 0 765 257 82 31 chr13 31834483 31834740 -87910158 + L2 LINE L2 2451 2720 -594 327 209 132 54 chr13 31834743 31834872 -87910026 + L1ME2 LINE L1 5886 6024 -140 538 156 19 14 chr13 31834875 31834977 -87909921 - L1ME LINE L1 -357 5805 5705 648 49 0 24 chr13 31834977 31835059 -87909839 + MADE1 DNA Mariner 1 80 0 538 156 19 14 chr13 31835059 31835079 -87909819 - L1ME LINE L1 -457 5705 5687 815 165 129 31 chr13 31835133 31835327 -87909571 - MIR SINE MIR -42 220 8 234 180 369 9 chr13 31835546 31835657 -87909241 + L2 LINE L2 3159 3309 -4 21 0 0 0 chr13 31835678 31835699 -87909199 + AT_rich Low_complexity Low_complexity 1 21 0 3010 206 36 81 chr13 31835868 31836304 -87908594 - L1ME2 LINE L1 -36 6197 5743 2118 101 0 10 chr13 31836304 31836601 -87908297 - AluSq SINE Alu -19 294 1 3010 206 36 81 chr13 31836601 31836848 -87908050 - L1ME2 LINE L1 -490 5743 5565 2004 144 14 0 chr13 31836848 31837139 -87907759 - AluSx SINE Alu -17 295 1 3010 206 36 81 chr13 31837139 31837388 -87907510 - L1ME2 LINE L1 -668 5565 5306 358 228 89 0 chr13 31837394 31837495 -87907403 + L1M4 LINE L1 5120 5229 -917 2425 231 78 5 chr13 31837516 31838259 -87906639 - L1ME2 LINE L1 -1033 5182 4386 1107 141 0 50 chr13 31838261 31838460 -87906438 - AluJo SINE Alu 0 312 124 751 173 72 43 chr13 31838460 31838574 -87906324 - L1ME2 LINE L1 -1838 4377 4253 183 42 0 0 chr13 31838574 31838598 -87906300 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 751 173 72 43 chr13 31838598 31838691 -87906207 - L1ME2 LINE L1 -1962 4253 4164 5080 234 30 27 chr13 31838693 31839099 -87905799 - L1M4 LINE L1 -1717 4429 4026 2208 68 14 0 chr13 31839099 31839401 -87905497 - AluSp SINE Alu 0 306 1 5080 234 30 27 chr13 31839401 31840838 -87904060 - L1M4 LINE L1 -2120 4026 2588 674 257 78 47 chr13 31840819 31840976 -87903922 - L1ME2 LINE L1 -3930 2466 2315 * 2093 84 84 0 chr13 31840976 31841250 -87903648 - AluSg SINE Alu -13 297 1 674 257 78 47 chr13 31841250 31841516 -87903382 - L1ME2 LINE L1 -4081 2315 2030 601 304 94 38 chr13 31841532 31842391 -87902507 - L1ME2 LINE L1 -5152 1053 173 277 202 119 36 chr13 31843135 31843219 -87901679 - L2 LINE L2 -213 3059 2969 240 261 0 0 chr13 31843750 31843815 -87901083 - L1ME LINE L1 -367 5754 5690 230 281 45 11 chr13 31844457 31844546 -87900352 - MIR SINE MIR -57 205 114 341 258 22 0 chr13 31844725 31844814 -87900084 - MIR SINE MIR -12 250 160 1682 157 40 30 chr13 31844873 31845173 -87899725 + AluJo SINE Alu 1 303 -9 1517 178 6 38 chr13 31845569 31845889 -87899009 - AluJo SINE Alu -2 310 1 2297 52 0 35 chr13 31850147 31850437 -87894461 + AluY SINE Alu 13 292 -19 2483 72 7 0 chr13 31851946 31852253 -87892645 - AluY SINE Alu -2 309 1 2305 117 0 0 chr13 31853075 31853384 -87891514 - AluSg SINE Alu -1 309 1 1635 163 67 11 chr13 31853575 31853858 -87891040 - AluJb SINE Alu -13 299 1 1767 171 7 10 chr13 31855711 31856004 -87888894 + AluJb SINE Alu 2 293 -19 2303 125 0 0 chr13 31856004 31856309 -87888589 + AluSx SINE Alu 1 305 -7 2054 141 42 12 chr13 31856366 31856919 -87887979 - LTR31 LTR ERV1 -9 610 1 2265 90 0 23 chr13 31857105 31857406 -87887492 + AluSc SINE Alu 1 294 -15 630 160 16 0 chr13 31859304 31859429 -87885469 - L1ME4a LINE L1 -3 6118 5992 398 245 133 0 chr13 31859450 31859601 -87885297 - L1ME4a LINE L1 -204 5917 5747 1800 141 7 4 chr13 31860565 31860834 -87884064 + AluJo SINE Alu 13 282 -30 931 160 50 0 chr13 31860896 31861096 -87883802 - Charlie5 DNA MER1_type 0 2623 2414 230 350 60 10 chr13 31861247 31861347 -87883551 + L2 LINE L2 3168 3272 0 333 0 0 0 chr13 31862023 31862060 -87882838 + (T)n Simple_repeat Simple_repeat 1 37 0 231 206 88 29 chr13 31862152 31862220 -87882678 + MIR SINE MIR 73 144 -118 334 295 0 32 chr13 31864242 31864337 -87880561 + MIR SINE MIR 60 151 -57 445 220 262 0 chr13 31864346 31864487 -87880411 + MER5B DNA MER1_type 1 178 0 453 233 164 25 chr13 31864494 31864653 -87880245 - MER5A DNA MER1_type 0 189 9 1889 112 26 0 chr13 31864909 31865178 -87879720 - L1PA11 LINE L1 -7 6167 5892 27 29 0 0 chr13 31865539 31865573 -87879325 + AT_rich Low_complexity Low_complexity 1 34 0 278 223 284 20 chr13 31866901 31867049 -87877849 + L2 LINE L2 3127 3313 0 511 174 143 0 chr13 31867852 31867950 -87876948 - MER5B DNA MER1_type 0 178 67 763 204 49 35 chr13 31867991 31868217 -87876681 + LTR33A LTR ERVL 274 502 -21 468 0 0 0 chr13 31869031 31869083 -87875815 + (CA)n Simple_repeat Simple_repeat 2 53 0 311 287 47 67 chr13 31869341 31869403 -87875495 - MIR SINE MIR -102 160 98 1218 152 221 70 chr13 31869403 31869719 -87875179 - MLT1A1 LTR MaLR 0 365 2 311 287 47 67 chr13 31869719 31869806 -87875092 - MIR SINE MIR -164 98 14 877 216 161 63 chr13 31870199 31870546 -87874352 + MER45R DNA AcHobo 1 381 -1200 245 152 0 0 chr13 31870562 31870608 -87874290 + MER45R DNA AcHobo 890 935 -646 1964 154 3 0 chr13 31870617 31870910 -87873988 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr13 31870915 31870935 -87873963 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2782 153 40 80 chr13 31870954 31871508 -87873390 + MER45R DNA AcHobo 930 1454 -127 2319 113 0 0 chr13 31871508 31871810 -87873088 - AluSx SINE Alu -10 302 1 2782 153 40 80 chr13 31871810 31871934 -87872964 + MER45R DNA AcHobo 1454 1581 0 1293 214 4 0 chr13 31872443 31872677 -87872221 - Charlie1a DNA MER1_type -1218 237 3 2218 109 0 19 chr13 31872954 31873267 -87871631 + AluSc SINE Alu 1 307 -2 425 319 57 69 chr13 31873342 31873731 -87871167 + HAL1 LINE L1 1218 1601 -906 1049 126 222 104 chr13 31874037 31874307 -87870591 - AluJo SINE Alu 0 302 1 238 226 0 48 chr13 31874670 31874754 -87870144 + A-rich Low_complexity Low_complexity 4 83 0 748 186 7 0 chr13 31874768 31874908 -87869990 + L1MC3 LINE L1 7451 7591 -194 204 97 0 0 chr13 31875176 31875207 -87869691 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 387 301 65 115 chr13 31875209 31875548 -87869350 - L2 LINE L2 -12 3260 2939 607 295 85 66 chr13 31875770 31876380 -87868518 + L1MD1 LINE L1 3356 3953 -2193 1836 135 62 0 chr13 31876380 31876669 -87868229 + AluSx SINE Alu 1 307 -5 607 295 85 66 chr13 31876669 31876837 -87868061 + L1MD1 LINE L1 3953 4116 -2030 743 178 0 31 chr13 31876837 31876966 -87867932 + FLAM_A SINE Alu 1 125 -8 607 295 85 66 chr13 31876966 31877106 -87867792 + L1MD1 LINE L1 4116 4292 -1854 225 154 0 0 chr13 31877781 31877820 -87867078 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 375 284 111 65 chr13 31878031 31878581 -87866317 + L1MD1 LINE L1 5330 5829 -413 189 121 0 0 chr13 31878624 31878657 -87866241 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 250 240 0 0 chr13 31878718 31878768 -87866130 + GA-rich Low_complexity Low_complexity 1 50 0 452 169 17 17 chr13 31878792 31878910 -87865988 + GA-rich Low_complexity Low_complexity 3 120 0 2107 229 44 50 chr13 31881505 31882122 -87862776 + MER97c DNA MER1_type? 4 616 -474 1206 186 5 0 chr13 31882128 31882348 -87862550 + L1M4 LINE L1 5438 5658 -526 739 203 32 0 chr13 31882349 31882507 -87862391 - MLT1F1 LTR MaLR -403 164 2 21 0 0 0 chr13 31882698 31882719 -87862179 + AT_rich Low_complexity Low_complexity 1 21 0 254 270 140 10 chr13 31883541 31883641 -87861257 + MIR SINE MIR 39 151 -111 227 231 0 0 chr13 31883686 31883738 -87861160 + L1MC4 LINE L1 6652 6703 -1339 2144 94 75 70 chr13 31883767 31884139 -87860759 - THE1C LTR MaLR -1 374 1 611 278 81 63 chr13 31887470 31887754 -87857144 + L2 LINE L2 3024 3312 -1 2237 161 75 50 chr13 31887844 31888260 -87856638 - MSTB LTR MaLR 0 426 1 2693 97 17 36 chr13 31888404 31888454 -87856444 - L1MA4 LINE L1 -4 6296 6247 216 0 0 0 chr13 31888454 31888478 -87856420 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2289 88 0 0 chr13 31888478 31888761 -87856137 - AluSx SINE Alu -29 283 1 2693 97 17 36 chr13 31888761 31889122 -87855776 - L1MA4 LINE L1 -51 6249 5892 2640 133 31 0 chr13 31889122 31889544 -87855354 + L1MA4 LINE L1 5409 5843 -457 1240 214 147 38 chr13 31889875 31890221 -87854677 - MLT2B1 LTR ERVL 0 520 137 14706 128 29 13 chr13 31890222 31892887 -87852011 - Tigger2 DNA MER2_type 0 2718 2 608 167 71 0 chr13 31892890 31893016 -87851882 - MLT2B1 LTR ERVL -385 135 1 213 363 113 43 chr13 31893143 31893443 -87851455 + L2 LINE L2 2369 2689 -625 1996 221 22 14 chr13 31894383 31894827 -87850071 - MER82 DNA MER2_type -7 646 199 1152 190 10 0 chr13 31895116 31895316 -87849582 - MER82 DNA MER2_type -451 202 1 512 92 51 51 chr13 31895911 31896009 -87848889 - L1MA5A LINE L1 -3 6294 6197 27 0 0 0 chr13 31896779 31896806 -87848092 + AT_rich Low_complexity Low_complexity 1 27 0 362 236 194 0 chr13 31897152 31897296 -87847602 + MER5A DNA MER1_type 8 179 -10 209 238 16 16 chr13 31898832 31898895 -87846003 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 21 82 0 0 chr13 31898963 31899012 -87845886 + AT_rich Low_complexity Low_complexity 1 49 0 1904 147 0 3 chr13 31899764 31900056 -87844842 + AluJb SINE Alu 1 291 -21 216 147 0 0 chr13 31900076 31900110 -87844788 - L2 LINE L2 -19 3253 3220 756 304 91 6 chr13 31901130 31901482 -87843416 + L3 LINE CR1 1190 1571 -6 277 331 171 7 chr13 31901999 31902268 -87842630 + L2 LINE L2 2967 3279 -34 636 246 104 5 chr13 31903920 31904140 -87840758 - MIR SINE MIR 0 262 21 507 133 61 8 chr13 31906045 31906282 -87838616 + (TCTA)n Simple_repeat Simple_repeat 1 249 0 237 323 42 0 chr13 31906698 31906794 -87838104 - MIR SINE MIR -142 120 21 276 196 54 115 chr13 31907698 31907846 -87837052 + Charlie7 DNA MER1_type 2427 2565 -47 742 267 63 55 chr13 31909113 31909510 -87835388 + MLT1L LTR MaLR 1 400 -215 225 196 107 0 chr13 31909554 31909610 -87835288 + MLT1L LTR MaLR 507 568 -47 241 340 59 55 chr13 31909889 31910145 -87834753 + L2 LINE L2 3004 3260 -12 2230 104 0 7 chr13 31910741 31911038 -87833860 - AluSx SINE Alu -17 295 1 296 267 0 22 chr13 31912048 31912138 -87832760 + MIR SINE MIR 125 212 -50 391 288 17 8 chr13 31912184 31912302 -87832596 - L2 LINE L2 0 3313 3195 522 236 20 92 chr13 31914306 31914404 -87830494 + MLT1L LTR MaLR 420 499 -116 1694 121 121 11 chr13 31914404 31914669 -87830229 - AluSg SINE Alu -16 294 1 522 236 20 92 chr13 31914669 31914765 -87830133 + MLT1L LTR MaLR 499 600 -15 2216 123 0 3 chr13 31914913 31915214 -87829684 + AluSx SINE Alu 1 300 -12 2066 129 0 44 chr13 31915299 31915480 -87829418 - AluSx SINE Alu -8 304 141 2267 118 0 0 chr13 31915480 31915776 -87829122 - AluSq SINE Alu -17 296 1 2066 129 0 44 chr13 31915776 31915912 -87828986 - AluSx SINE Alu -171 141 1 576 205 103 7 chr13 31916032 31916182 -87828716 + MER45A DNA AcHobo 13 178 0 2587 77 0 3 chr13 31916403 31916716 -87828182 + AluSx SINE Alu 1 312 0 213 65 0 0 chr13 31921502 31921533 -87823365 + (TG)n Simple_repeat Simple_repeat 1 31 0 408 172 16 8 chr13 31921533 31921655 -87823243 + GA-rich Low_complexity Low_complexity 2 124 0 433 208 12 0 chr13 31921701 31921874 -87823024 + GA-rich Low_complexity Low_complexity 1 175 0 204 318 0 0 chr13 31922451 31922514 -87822384 + L2 LINE L2 3209 3271 -1 441 175 0 0 chr13 31925161 31925241 -87819657 + AluJ/FRAM SINE Alu 219 298 -14 213 383 47 7 chr13 31925389 31925538 -87819360 + MIR SINE MIR 47 201 -61 1970 133 43 54 chr13 31925854 31926222 -87818676 + THE1B LTR MaLR 1 364 0 793 182 0 0 chr13 31926222 31926354 -87818544 + FLAM_A SINE Alu 11 142 0 600 290 29 29 chr13 31927213 31927458 -87817440 + MER112 DNA MER1_type 8 252 -8 308 310 125 47 chr13 31927615 31927824 -87817074 + L3 LINE CR1 280 520 -1057 1499 112 51 0 chr13 31927824 31928039 -87816859 + MER30 DNA MER1_type 5 230 0 308 310 125 47 chr13 31928039 31928126 -87816772 + L3 LINE CR1 520 599 -978 744 333 80 27 chr13 31928388 31928838 -87816060 + L3 LINE CR1 759 1232 -345 367 219 123 0 chr13 31928838 31928952 -87815946 + MER5C DNA MER1_type 1 128 -196 2093 133 7 0 chr13 31929480 31929774 -87815124 + AluSx SINE Alu 1 296 -16 2385 187 64 27 chr13 31929988 31930576 -87814322 + LTR27 LTR ERV1 3 680 -141 580 192 79 11 chr13 31930717 31930894 -87814004 + MER5C DNA MER1_type 132 320 -4 314 135 0 19 chr13 31931013 31931065 -87813833 - MER58A DNA MER1_type -11 96 46 375 300 74 58 chr13 31931104 31931414 -87813484 + L3 LINE CR1 1261 1575 -2 306 279 135 0 chr13 31932902 31933006 -87811892 + MIR SINE MIR 32 149 -113 2311 95 16 0 chr13 31934394 31934698 -87810200 - AluSx SINE Alu -3 309 1 326 348 118 9 chr13 31934856 31935077 -87809821 + MIR SINE MIR 4 248 -14 189 326 45 30 chr13 31935114 31935246 -87809652 - L2 LINE L2 -350 2963 2830 1280 164 9 35 chr13 31935672 31935903 -87808995 - AluJo SINE Alu -17 295 71 1308 208 58 61 chr13 31936476 31936837 -87808061 + MLT1A2 LTR MaLR 1 360 -14 255 143 0 0 chr13 31936910 31936945 -87807953 - Alu SINE Alu -267 35 1 892 204 78 13 chr13 31936950 31937180 -87807718 - L1ME3 LINE L1 -189 5973 5729 2277 98 3 7 chr13 31937182 31937489 -87807409 - AluSc SINE Alu -3 306 1 203 379 116 12 chr13 31937845 31938096 -87806802 + L2 LINE L2 2368 2644 -670 3035 201 106 61 chr13 31938738 31939539 -87805359 + L1ME1 LINE L1 5213 6220 -114 1842 146 0 33 chr13 31939539 31939679 -87805219 + AluJb SINE Alu 1 144 -168 2283 106 3 0 chr13 31939679 31939971 -87804927 + AluSx SINE Alu 1 293 -19 1842 146 0 33 chr13 31939971 31940132 -87804766 + AluJb SINE Alu 144 292 -20 3035 201 106 61 chr13 31940132 31940252 -87804646 + L1ME1 LINE L1 6220 6333 -1 4431 225 35 27 chr13 31940264 31941308 -87803590 + L1MC1 LINE L1 2 1054 -5488 213 65 0 0 chr13 31941308 31941339 -87803559 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6002 195 26 11 chr13 31941342 31943030 -87801868 + L1MC1 LINE L1 5119 6831 0 189 328 0 31 chr13 31943926 31943990 -87800908 + L2 LINE L2 3201 3262 -10 226 361 67 25 chr13 31944004 31944123 -87800775 - MIR3 SINE MIR -27 181 58 389 300 269 8 chr13 31944524 31944784 -87800114 - L2 LINE L2 0 3272 2945 2422 186 29 10 chr13 31944833 31945248 -87799650 - MSTB LTR MaLR -1 425 3 245 311 194 34 chr13 31945318 31945700 -87799198 - L2 LINE L2 -546 2768 2326 2701 169 53 25 chr13 31945989 31946520 -87798378 + LTR35 LTR ERV1 73 618 0 340 287 37 19 chr13 31948945 31949053 -87795845 + MIR SINE MIR 151 260 -2 31 44 0 0 chr13 31949276 31949321 -87795577 + AT_rich Low_complexity Low_complexity 1 45 0 490 298 42 64 chr13 31949747 31950059 -87794839 + MER41E LTR ERV1 148 452 -60 465 206 36 198 chr13 31950202 31950450 -87794448 + MIR SINE MIR 45 252 -10 28 71 0 0 chr13 31950664 31950720 -87794178 + AT_rich Low_complexity Low_complexity 1 56 0 1980 153 0 7 chr13 31951022 31951330 -87793568 + AluSx SINE Alu 1 306 -6 246 105 0 0 chr13 31951820 31951858 -87793040 + (GA)n Simple_repeat Simple_repeat 2 39 0 3597 235 65 10 chr13 31953243 31954947 -87789951 + L1ME1 LINE L1 4235 6051 -115 1930 174 0 0 chr13 31954947 31955251 -87789647 - AluJo SINE Alu -8 304 1 3597 235 65 10 chr13 31955251 31955354 -87789544 + L1ME1 LINE L1 6051 6147 -19 2581 106 6 11 chr13 31955355 31955712 -87789186 - THE1A LTR MaLR 0 355 1 1199 64 6 0 chr13 31955712 31955869 -87789029 - THE1A-int LTR MaLR 0 1580 1423 * 4989 96 38 10 chr13 31955863 31956569 -87788329 - THE1A-int LTR MaLR -853 727 2 2684 93 8 8 chr13 31956570 31956925 -87787973 - THE1A LTR MaLR 0 355 1 2144 130 0 10 chr13 31956940 31957241 -87787657 + AluSx SINE Alu 1 298 -14 636 100 33 33 chr13 31957241 31957421 -87787477 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 28 0 0 chr13 31957476 31957512 -87787386 + AT_rich Low_complexity Low_complexity 1 36 0 280 344 10 10 chr13 31958086 31958182 -87786716 + MIR SINE MIR 19 114 -94 200 200 18 0 chr13 31958715 31958770 -87786128 + CT-rich Low_complexity Low_complexity 2 57 0 315 357 16 8 chr13 31958798 31958924 -87785974 + L2 LINE L2 3185 3311 -2 2206 120 10 0 chr13 31960377 31960686 -87784212 + AluSx SINE Alu 1 312 0 2999 92 2 10 chr13 31963570 31963973 -87780925 + L1MA1 LINE L1 5903 6302 0 21 36 0 0 chr13 31967919 31967947 -87776951 + AT_rich Low_complexity Low_complexity 1 28 0 738 275 67 37 chr13 31968002 31968364 -87776534 + MLT1I LTR MaLR 52 395 -14 684 48 10 19 chr13 31971367 31971470 -87773428 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 658 262 24 12 chr13 31972676 31972844 -87772054 + MIR SINE MIR 49 218 -44 194 329 106 63 chr13 31972985 31973222 -87771676 - L2 LINE L2 0 3272 3026 201 39 0 0 chr13 31974672 31974698 -87770200 + (CA)n Simple_repeat Simple_repeat 1 26 0 374 236 68 96 chr13 31975432 31975652 -87769246 + MER112 DNA MER1_type 5 218 -42 217 273 48 100 chr13 31975747 31975890 -87769008 + L2 LINE L2 2451 2579 -735 1712 94 31 5 chr13 31975890 31976114 -87768784 + MER30 DNA MER1_type 1 230 0 217 273 48 100 chr13 31976114 31976201 -87768697 + L2 LINE L2 2579 2669 -645 389 335 109 40 chr13 31976393 31976697 -87768201 + L2 LINE L2 2932 3256 -16 190 279 110 118 chr13 31977460 31977697 -87767201 + L2 LINE L2 2954 3188 -84 297 255 57 9 chr13 31977954 31978060 -87766838 + MIR SINE MIR 74 184 -78 227 295 54 60 chr13 31978829 31978978 -87765920 + L2 LINE L2 2702 2849 -465 2083 132 7 7 chr13 31981083 31981387 -87763511 - AluSx SINE Alu -8 304 1 207 179 0 0 chr13 31981880 31981919 -87762979 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 274 0 0 chr13 31982708 31982781 -87762117 + GA-rich Low_complexity Low_complexity 4 76 0 1353 174 101 22 chr13 31983471 31983747 -87761151 + AluJb SINE Alu 1 298 -14 2342 110 3 0 chr13 31983885 31984194 -87760704 - AluSg SINE Alu 0 310 1 22 0 0 0 chr13 31984538 31984560 -87760338 + AT_rich Low_complexity Low_complexity 1 22 0 290 270 14 14 chr13 31984628 31984702 -87760196 + MIR SINE MIR 74 147 -61 442 268 12 95 chr13 31985838 31985931 -87758967 - MIR SINE MIR -27 235 161 2203 104 3 0 chr13 31985931 31986219 -87758679 + AluSp SINE Alu 5 293 -20 442 268 12 95 chr13 31986219 31986293 -87758605 - MIR SINE MIR -101 161 82 277 271 106 65 chr13 31986777 31986947 -87757951 - MIR SINE MIR -41 221 45 579 215 44 0 chr13 31989080 31989215 -87755683 + MIR SINE MIR 53 193 -69 38 40 0 27 chr13 31989378 31989412 -87755486 + AT_rich Low_complexity Low_complexity 1 34 -38 1903 124 35 18 chr13 31989412 31989695 -87755203 + AluSx SINE Alu 1 288 -24 38 40 0 27 chr13 31989695 31989734 -87755164 + AT_rich Low_complexity Low_complexity 34 72 0 995 306 98 30 chr13 31989734 31990274 -87754624 + Charlie7 DNA MER1_type 113 689 -1923 388 182 25 66 chr13 31990259 31990380 -87754518 + Charlie7 DNA MER1_type 2497 2612 0 * 333 0 0 0 chr13 31990726 31990763 -87754135 + (TG)n Simple_repeat Simple_repeat 2 38 0 2305 96 0 0 chr13 31991204 31991507 -87753391 + AluY SINE Alu 1 303 -8 822 290 38 76 chr13 31991618 31992094 -87752804 + L2 LINE L2 2851 3308 -5 240 209 0 0 chr13 31992648 31992691 -87752207 + L2 LINE L2 3219 3261 -11 2451 73 3 19 chr13 31994057 31994373 -87750525 + AluY SINE Alu 1 311 0 213 22 0 89 chr13 31994378 31994423 -87750475 + (TAAAAA)n Simple_repeat Simple_repeat 4 44 0 584 218 123 41 chr13 31995263 31995433 -87749465 - L1ME LINE L1 -382 5739 5556 236 317 122 80 chr13 31995762 31996163 -87748735 - L2 LINE L2 -2 3270 2853 204 326 11 65 chr13 31997313 31997405 -87747493 - MIR SINE MIR -95 113 27 189 0 0 0 chr13 31998832 31998853 -87746045 + (GGAA)n Simple_repeat Simple_repeat 2 22 0 270 0 0 0 chr13 31999684 31999714 -87745184 + (CA)n Simple_repeat Simple_repeat 2 31 0 207 361 78 44 chr13 32001650 32002063 -87742835 - L2 LINE L2 -337 2977 2551 463 257 77 22 chr13 32002112 32002295 -87742603 + L1MC/D LINE L1 5625 5817 -1991 248 197 0 118 chr13 32002484 32002560 -87742338 - MER91A DNA MER1_type -129 67 1 1599 175 11 7 chr13 32003019 32003288 -87741610 + AluJb SINE Alu 12 281 -31 192 40 0 0 chr13 32003292 32003317 -87741581 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 581 259 138 0 chr13 32003703 32003892 -87741006 + MIR SINE MIR 38 252 -10 76 51 0 0 chr13 32004475 32004593 -87740305 + AT_rich Low_complexity Low_complexity 1 118 0 259 221 52 39 chr13 32004699 32004776 -87740122 - L1ME4a LINE L1 -108 6013 5936 1795 149 41 16 chr13 32004807 32005122 -87739776 + MER2 DNA MER2_type 22 344 -1 372 43 0 0 chr13 32005123 32005169 -87739729 + (TG)n Simple_repeat Simple_repeat 1 46 0 251 239 14 14 chr13 32005169 32005240 -87739658 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 573 94 0 0 chr13 32007973 32008058 -87736840 + (CA)n Simple_repeat Simple_repeat 2 86 0 6851 86 3 5 chr13 32009100 32010042 -87734856 + L1PB1 LINE L1 5210 6150 -1 2560 167 57 5 chr13 32010070 32010512 -87734386 + LTR32 LTR ERVL 7 471 0 225 108 0 0 chr13 32011301 32011338 -87733560 + (CA)n Simple_repeat Simple_repeat 2 38 0 2328 157 68 30 chr13 32011428 32011868 -87733030 + LTR32 LTR ERVL 15 471 0 306 139 0 0 chr13 32012695 32012738 -87732160 - MER45A DNA AcHobo 0 178 136 848 67 0 0 chr13 32012761 32012866 -87732032 + AluY SINE Alu 206 310 -1 1704 149 103 0 chr13 32012868 32013149 -87731749 + AluJo SINE Alu 1 310 -2 447 251 56 39 chr13 32013291 32013470 -87731428 + L2 LINE L2 3108 3289 -24 2368 101 0 3 chr13 32013729 32014037 -87730861 + AluSg SINE Alu 1 307 -3 1960 140 70 3 chr13 32014406 32014749 -87730149 - L1MB2 LINE L1 -7 6164 5799 620 182 6 136 chr13 32014950 32015030 -87729868 - MER45A DNA AcHobo -1403 178 132 2648 150 56 23 chr13 32015030 32015187 -87729711 + L1MB2 LINE L1 5670 5820 -351 2261 107 0 0 chr13 32015187 32015476 -87729422 + AluSc SINE Alu 1 289 -20 2648 150 56 23 chr13 32015476 32015797 -87729101 + L1MB2 LINE L1 5820 6164 -7 620 182 6 136 chr13 32015797 32015892 -87729006 - MER45A DNA AcHobo -1449 132 26 2290 91 0 0 chr13 32016695 32016980 -87727918 + AluSq SINE Alu 1 285 -28 1019 240 32 16 chr13 32017003 32017253 -87727645 + MIR SINE MIR 9 262 0 1434 233 78 18 chr13 32017664 32018050 -87726848 - MLT1I LTR MaLR 0 409 1 265 214 270 0 chr13 32018521 32018610 -87726288 - L2 LINE L2 0 3272 3160 1928 170 41 27 chr13 32019187 32019552 -87725346 + MLT1A2 LTR MaLR 1 370 -4 2130 136 3 0 chr13 32019751 32020053 -87724845 - AluSx SINE Alu -9 303 1 264 327 26 96 chr13 32021137 32021522 -87723376 - L2 LINE L2 -33 3239 2882 230 255 0 0 chr13 32024382 32024429 -87720469 - MER81 DNA DNA -36 78 32 1138 155 11 5 chr13 32025162 32025349 -87719549 + MER2 DNA MER2_type 3 190 -155 2234 109 0 10 chr13 32025349 32025653 -87719245 + AluSx SINE Alu 1 301 -11 232 211 56 42 chr13 32025722 32025793 -87719105 + MER2 DNA MER2_type 267 338 -7 2418 136 115 14 chr13 32025955 32026374 -87718524 + LOR1b LTR ERV1 1 461 0 5913 135 96 1 chr13 32026393 32027325 -87717573 + LTR28 LTR ERV1 1 1020 0 290 260 67 10 chr13 32027998 32028102 -87716796 + MIR SINE MIR 86 195 -67 837 253 5 31 chr13 32028366 32028416 -87716482 + MER5A DNA MER1_type 1 51 -138 2862 185 18 73 chr13 32028416 32029033 -87715865 + MER119 DNA MER1_type 1 583 0 837 253 5 31 chr13 32029033 32029176 -87715722 + MER5A DNA MER1_type 51 189 0 211 326 52 42 chr13 32030796 32030989 -87713909 + L2 LINE L2 2569 2763 -551 191 302 0 0 chr13 32031492 32031545 -87713353 - L2 LINE L2 -56 3257 3205 334 331 48 0 chr13 32031945 32032069 -87712829 + MIR SINE MIR 26 155 -107 225 211 39 0 chr13 32032096 32032148 -87712750 - MIR SINE MIR -50 212 159 4882 160 14 104 chr13 32032152 32034372 -87710526 - L1MB2 LINE L1 -1 6170 4166 21 0 0 0 chr13 32034829 32034850 -87710048 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr13 32034855 32034883 -87710015 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 5642 93 18 8 chr13 32034883 32036090 -87708808 + SVA Other Other 52 1386 0 248 350 166 14 chr13 32036786 32037003 -87707895 - L2 LINE L2 -505 2809 2560 658 192 212 25 chr13 32037277 32037475 -87707423 - MER46A DNA MER2_type -1 235 1 * 775 149 0 0 chr13 32037363 32037477 -87707421 + MER46A DNA MER2_type 33 146 -90 343 273 36 72 chr13 32037580 32037719 -87707179 - MIR SINE MIR -73 135 2 1308 249 109 31 chr13 32037775 32038262 -87706636 + MLT1H LTR MaLR 25 549 0 258 190 35 17 chr13 32039871 32039929 -87704969 - L2 LINE L2 0 3313 3255 21 0 0 0 chr13 32039991 32040012 -87704886 + AT_rich Low_complexity Low_complexity 1 21 0 2247 96 0 0 chr13 32040234 32040564 -87704334 + AluSx SINE Alu 1 330 0 354 296 94 13 chr13 32041093 32041252 -87703646 + MER5B DNA MER1_type 7 178 0 539 134 4 15 chr13 32041437 32041689 -87703209 + AluJo SINE Alu 1 312 0 225 298 16 24 chr13 32041925 32042049 -87702849 + CT-rich Low_complexity Low_complexity 1 123 0 428 310 89 24 chr13 32042828 32043041 -87701857 - MIR SINE MIR -23 239 13 198 0 0 0 chr13 32043100 32043122 -87701776 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1704 174 3 3 chr13 32043127 32043409 -87701489 - AluJb SINE Alu -30 282 1 298 306 200 30 chr13 32043823 32044088 -87700810 - L3 LINE CR1 -555 1022 713 373 362 27 43 chr13 32044098 32044286 -87700612 + L2 LINE L2 3087 3271 -1 258 210 123 12 chr13 32044425 32044506 -87700392 + MIR SINE MIR 95 184 -78 395 321 9 0 chr13 32047355 32047464 -87697434 - MER81 DNA DNA -1 113 4 3489 174 73 24 chr13 32047787 32048519 -87696379 + LTR1B LTR ERV1 1 785 0 23 33 0 0 chr13 32050137 32050167 -87694731 + AT_rich Low_complexity Low_complexity 1 30 0 277 335 31 37 chr13 32050360 32050551 -87694347 - L2 LINE L2 -927 2387 2198 281 306 151 83 chr13 32052288 32052540 -87692358 + L2 LINE L2 3004 3272 0 645 89 0 0 chr13 32053120 32053199 -87691699 + THE1B LTR MaLR 1 79 -285 935 136 7 0 chr13 32053199 32053339 -87691559 + AluSg/x SINE Alu 164 304 -6 449 289 44 22 chr13 32053353 32053533 -87691365 - MIR SINE MIR -67 195 12 181 428 86 0 chr13 32054265 32054417 -87690481 + L2 LINE L2 3107 3271 -1 965 241 9 5 chr13 32054470 32054686 -87690212 + MER20 DNA MER1_type 1 217 -2 338 0 24 0 chr13 32055968 32056010 -87688888 + (CA)n Simple_repeat Simple_repeat 1 43 0 384 307 20 0 chr13 32056329 32056430 -87688468 + MIR SINE MIR 50 152 -110 1195 191 38 0 chr13 32056445 32056655 -87688243 - MER20 DNA MER1_type -1 218 1 192 261 29 43 chr13 32056882 32056951 -87687947 + MIR SINE MIR 158 225 -37 1454 231 139 25 chr13 32057182 32057658 -87687240 + MLT1G3 LTR MaLR 1 530 0 548 260 96 19 chr13 32059442 32059650 -87685248 + MIR SINE MIR 21 244 -18 263 254 54 54 chr13 32060108 32060238 -87684660 + L2 LINE L2 3174 3303 -10 24 93 0 0 chr13 32060505 32060559 -87684339 + AT_rich Low_complexity Low_complexity 1 54 0 198 291 25 25 chr13 32061360 32061439 -87683459 - MIR SINE MIR 0 262 184 904 216 81 16 chr13 32061491 32061523 -87683375 + L1ME3 LINE L1 5695 5723 -439 2175 108 7 3 chr13 32061523 32061829 -87683069 + AluSg SINE Alu 1 307 -3 904 216 81 16 chr13 32061829 32062061 -87682837 + L1ME3 LINE L1 5723 5973 -189 250 143 0 0 chr13 32062066 32062101 -87682797 + Alu SINE Alu 1 35 -266 1310 205 58 61 chr13 32062174 32062535 -87682363 - MLT1A2 LTR MaLR -14 360 1 186 346 70 59 chr13 32062543 32062829 -87682069 - L2 LINE L2 -2110 1204 916 1303 157 9 26 chr13 32063108 32063337 -87681561 + AluJo SINE Alu 71 295 -17 230 326 45 30 chr13 32063764 32063896 -87681002 + L2 LINE L2 2831 2964 -350 294 325 102 41 chr13 32064175 32064470 -87680428 - L3 LINE CR1 -1072 505 193 219 308 99 0 chr13 32065351 32065442 -87679456 - L2 LINE L2 -5 3267 3168 1909 131 0 54 chr13 32065757 32066070 -87678828 + AluSx SINE Alu 1 296 -16 325 245 76 3 chr13 32066098 32066215 -87678683 + L1MA9 LINE L1 6167 6290 -4 1411 191 33 46 chr13 32066689 32066992 -87677906 - AluJo SINE Alu -13 299 1 203 42 0 0 chr13 32067777 32067801 -87677097 - L2 LINE L2 -23 3290 3267 185 362 0 0 chr13 32069479 32069548 -87675350 - L3 LINE CR1 -14 1563 1495 625 334 96 30 chr13 32069593 32069958 -87674940 - L3 LINE CR1 -209 1368 980 1572 146 47 36 chr13 32070895 32071170 -87673728 + AluJb SINE Alu 18 295 -17 413 313 87 56 chr13 32071364 32071900 -87672998 + L2 LINE L2 2691 3268 -4 3235 93 7 16 chr13 32072099 32072540 -87672358 + MLT2A1 LTR ERVL 1 437 -7 230 268 83 38 chr13 32072840 32072997 -87671901 + L1ME4a LINE L1 5873 6036 -85 2263 87 16 39 chr13 32073420 32073731 -87671167 - AluSx SINE Alu -4 308 5 230 254 45 0 chr13 32073906 32073973 -87670925 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 2056 137 102 0 chr13 32074269 32074584 -87670314 + MER7A DNA MER2_type 1 345 -1 476 264 0 0 chr13 32075039 32075149 -87669749 - L2 LINE L2 -5 3308 3199 473 316 53 53 chr13 32075362 32075549 -87669349 + MIR SINE MIR 29 215 -47 471 305 63 85 chr13 32076108 32076518 -87668380 + L2 LINE L2 2867 3267 -5 2491 74 0 3 chr13 32076855 32077167 -87667731 - AluY SINE Alu 0 311 1 331 213 50 12 chr13 32077610 32077690 -87667208 - MIR SINE MIR 0 262 180 1597 167 56 24 chr13 32077719 32078006 -87666892 - AluJb SINE Alu -16 296 1 359 145 26 13 chr13 32078006 32078082 -87666816 - MIR SINE MIR -66 196 120 275 306 83 9 chr13 32078333 32078441 -87666457 + L2 LINE L2 2945 3060 -212 400 305 85 0 chr13 32078633 32078790 -87666108 + MIR3 SINE MIR 3 164 -64 465 170 32 0 chr13 32079208 32079302 -87665596 + MER5A DNA MER1_type 9 105 -84 29 84 0 0 chr13 32079540 32079611 -87665287 + AT_rich Low_complexity Low_complexity 1 71 0 5565 107 0 28 chr13 32080196 32080992 -87663906 + L1PA10 LINE L1 4536 5299 -869 2288 122 0 0 chr13 32080992 32081303 -87663595 + AluSx SINE Alu 1 311 -1 5565 107 0 28 chr13 32081303 32081768 -87663130 + L1PA10 LINE L1 5299 5776 -392 738 136 0 0 chr13 32081869 32082005 -87662893 + L1PA10 LINE L1 6045 6180 0 2233 131 0 0 chr13 32082618 32082984 -87661914 - AluSq SINE Alu 0 366 1 2108 127 13 98 chr13 32084554 32084831 -87660067 - MER7A DNA MER2_type -2693 345 109 1776 163 13 16 chr13 32084831 32085144 -87659754 + AluJb SINE Alu 1 312 0 2108 127 13 98 chr13 32085144 32085243 -87659655 - MER7A DNA MER2_type -2929 109 3 487 224 50 37 chr13 32085251 32085419 -87659479 + MIR SINE MIR 40 212 -50 249 325 42 42 chr13 32087467 32087587 -87657311 - MIR3 SINE MIR -52 156 37 198 238 0 0 chr13 32088391 32088433 -87656465 + L2 LINE L2 3271 3312 -1 190 141 35 224 chr13 32088441 32088526 -87656372 - MIR SINE MIR -70 192 124 675 277 25 34 chr13 32089493 32089731 -87655167 - MIR SINE MIR -6 256 21 22 0 0 0 chr13 32090922 32090944 -87653954 + AT_rich Low_complexity Low_complexity 1 22 0 2061 125 0 0 chr13 32091006 32091316 -87653582 + AluSx SINE Alu 1 310 0 275 207 17 0 chr13 32091579 32091637 -87653261 - MIR SINE MIR -100 162 104 438 275 22 89 chr13 32092943 32093212 -87651686 + MIR SINE MIR 1 251 -11 1477 168 17 0 chr13 32093217 32093449 -87651449 - MER46A DNA MER2_type 0 236 1 2131 166 30 0 chr13 32095204 32095577 -87649321 + MLT1B LTR MaLR 7 390 0 207 329 37 12 chr13 32095674 32095756 -87649142 - MIR3 SINE MIR -39 169 86 199 170 0 151 chr13 32096419 32096472 -87648426 - L2 LINE L2 -9 3263 3219 * 622 305 26 34 chr13 32096441 32096674 -87648224 - MIR SINE MIR -17 245 15 248 247 165 21 chr13 32099211 32099308 -87645590 + MER103 DNA DNA 22 132 -34 234 160 0 120 chr13 32099530 32099580 -87645318 - Alu SINE Alu -125 174 131 528 286 32 13 chr13 32101442 32101596 -87643302 - MIR3 SINE MIR -2 206 50 330 26 0 0 chr13 32102066 32102105 -87642793 + (TG)n Simple_repeat Simple_repeat 2 40 0 306 103 0 218 chr13 32102175 32102262 -87642636 + L1MB3 LINE L1 5423 5490 -681 2537 147 2 12 chr13 32102263 32102677 -87642221 + L1MB3 LINE L1 5774 6183 0 1962 153 0 10 chr13 32103408 32103709 -87641189 + AluJo SINE Alu 5 302 -10 457 215 146 15 chr13 32103965 32104095 -87640803 + MIR SINE MIR 6 152 -110 30 0 0 0 chr13 32104520 32104550 -87640348 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 32105380 32105401 -87639497 + AT_rich Low_complexity Low_complexity 1 21 0 204 237 0 0 chr13 32107504 32107542 -87637356 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 244 156 0 0 chr13 32107542 32107587 -87637311 - LTR66 LTR ERVL -172 438 394 440 248 22 72 chr13 32109350 32109525 -87635373 - MIR SINE MIR -63 145 18 1533 254 203 17 chr13 32109657 32110366 -87634532 + L2 LINE L2 1838 2678 -636 699 286 45 31 chr13 32110367 32110654 -87634244 + L2 LINE L2 2949 3239 -74 249 159 0 0 chr13 32110687 32110731 -87634167 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 373 273 57 11 chr13 32110799 32110887 -87634011 - MIR SINE MIR -157 105 14 4704 165 60 2 chr13 32111156 32112408 -87632490 + L1MB7 LINE L1 4865 6183 -1 275 296 74 30 chr13 32112485 32112620 -87632278 + MIR3 SINE MIR 37 177 -31 491 325 66 0 chr13 32112753 32112919 -87631979 + MIR SINE MIR 35 211 -51 656 227 0 8 chr13 32113538 32113670 -87631228 + FLAM_A SINE Alu 1 131 -2 2070 121 13 10 chr13 32114072 32114370 -87630528 + AluSx SINE Alu 1 299 -13 648 175 158 12 chr13 32114380 32114551 -87630347 - MIR SINE MIR 0 262 67 622 270 48 70 chr13 32116009 32116429 -87628469 + L2 LINE L2 2845 3249 -23 21 0 0 0 chr13 32117897 32117918 -87626980 + AT_rich Low_complexity Low_complexity 1 21 0 1803 135 0 18 chr13 32118090 32118364 -87626534 - AluSx SINE Alu -43 269 1 22 0 0 0 chr13 32118747 32118769 -87626129 + AT_rich Low_complexity Low_complexity 1 22 0 888 183 0 23 chr13 32118788 32118963 -87625935 - FRAM SINE Alu -2 174 4 541 290 152 99 chr13 32119181 32119562 -87625336 + L2 LINE L2 2122 2481 -833 1852 159 7 16 chr13 32119562 32119871 -87625027 + AluJb SINE Alu 1 306 -6 541 290 152 99 chr13 32119871 32120258 -87624640 + L2 LINE L2 2481 2931 -383 634 234 72 6 chr13 32120346 32120513 -87624385 + MER5B DNA MER1_type 1 178 0 1082 193 244 52 chr13 32122216 32122621 -87622277 + MLT1F1 LTR MaLR 1 507 -59 1976 120 3 31 chr13 32122875 32123208 -87621690 - AluSx SINE Alu 0 325 1 2087 139 16 68 chr13 32123410 32123507 -87621391 + MER7A DNA MER2_type 1 101 -2937 1999 142 0 35 chr13 32123507 32123817 -87621081 - AluSx SINE Alu -13 299 1 2087 139 16 68 chr13 32123817 32124086 -87620812 + MER7A DNA MER2_type 101 346 0 29 60 0 0 chr13 32126483 32126533 -87618365 + GC_rich Low_complexity Low_complexity 1 50 0 314 221 21 71 chr13 32126920 32127060 -87617838 + C-rich Low_complexity Low_complexity 2 134 0 244 325 202 29 chr13 32128973 32129770 -87615128 + L2 LINE L2 1141 2075 -1239 186 197 76 30 chr13 32129862 32129928 -87614970 + MIR SINE MIR 151 219 -43 610 280 142 19 chr13 32129974 32130242 -87614656 + L2 LINE L2 3013 3313 0 192 379 9 9 chr13 32130287 32130403 -87614495 + L2 LINE L2 2358 2473 -841 185 218 129 118 chr13 32130519 32130689 -87614209 + L2 LINE L2 2912 3083 -189 29 0 0 0 chr13 32131019 32131048 -87613850 + AT_rich Low_complexity Low_complexity 1 29 0 399 261 84 25 chr13 32131197 32131400 -87613498 - L1ME4a LINE L1 -217 5904 5690 855 305 12 4 chr13 32132727 32132986 -87611912 + MIR SINE MIR 2 262 0 196 350 33 42 chr13 32133651 32133771 -87611127 + MIR SINE MIR 25 143 -65 273 321 37 0 chr13 32134391 32134472 -87610426 - MIR SINE MIR -126 136 53 883 138 15 0 chr13 32134486 32134616 -87610282 + AluSq SINE Alu 23 154 -159 7666 130 82 101 chr13 32134616 32136334 -87608564 + pTR5 LTR ERV1 747 2432 -6 1163 145 0 0 chr13 32136334 32136493 -87608405 + AluSg/x SINE Alu 138 296 -16 2201 104 0 0 chr13 32137021 32137318 -87607580 - AluY SINE Alu -14 297 1 327 167 0 0 chr13 32137520 32137574 -87607324 + Tigger2 DNA MER2_type 3 56 -2662 2320 73 3 35 chr13 32137577 32137891 -87607007 - AluY SINE Alu -7 304 1 2072 132 120 57 chr13 32137893 32138305 -87606593 + Tigger2 DNA MER2_type 2267 2708 -10 2444 108 134 8 chr13 32138305 32138685 -87606213 - MSTA LTR MaLR 0 428 1 2072 132 120 57 chr13 32138685 32138697 -87606201 + Tigger2 DNA MER2_type 2708 2718 0 2627 136 75 5 chr13 32138842 32139240 -87605658 - MSTB LTR MaLR 0 426 1 205 242 45 15 chr13 32139346 32139412 -87605486 + L2 LINE L2 3225 3292 -21 523 316 174 4 chr13 32139461 32139708 -87605190 + L2 LINE L2 3006 3294 -19 232 314 107 14 chr13 32139811 32139951 -87604947 + L2 LINE L2 749 901 -2413 282 206 96 0 chr13 32140391 32140464 -87604434 + L2 LINE L2 2891 2970 -343 367 309 57 8 chr13 32140515 32140638 -87604260 + L2 LINE L2 3184 3312 -1 779 197 23 0 chr13 32140970 32141102 -87603796 + AluJo SINE Alu 1 135 -177 23 0 0 0 chr13 32141189 32141212 -87603686 + AT_rich Low_complexity Low_complexity 1 23 0 2553 49 0 0 chr13 32141394 32141699 -87603199 + AluY SINE Alu 1 305 -6 370 210 0 0 chr13 32145123 32145185 -87599713 - L2 LINE L2 0 3313 3252 207 0 0 0 chr13 32145314 32145337 -87599561 + (CAG)n Simple_repeat Simple_repeat 1 23 0 324 231 13 39 chr13 32145366 32145444 -87599454 - L2 LINE L2 -9 3263 3188 462 200 38 9 chr13 32145790 32145895 -87599003 + MER53 DNA DNA 1 108 -81 181 292 0 0 chr13 32146587 32146635 -87598263 + L2 LINE L2 3219 3266 -6 686 217 102 6 chr13 32146822 32146988 -87597910 + MIR SINE MIR 64 245 -17 2250 108 3 10 chr13 32147394 32147708 -87597190 - AluSx SINE Alu 0 312 1 327 365 40 14 chr13 32148404 32148552 -87596346 + MIR3 SINE MIR 48 199 -9 21 0 0 0 chr13 32150197 32150218 -87594680 + AT_rich Low_complexity Low_complexity 1 21 0 5185 150 43 9 chr13 32150281 32151252 -87593646 + L1MB3 LINE L1 5175 6181 -2 193 306 159 71 chr13 32151601 32151771 -87593127 - MER5A DNA MER1_type 0 189 5 374 181 0 96 chr13 32152188 32152231 -87592667 - MER94 DNA DNA -40 94 63 2651 85 13 75 chr13 32152231 32152629 -87592269 - THE1C LTR MaLR -2 373 1 374 181 0 96 chr13 32152629 32152679 -87592219 - MER94 DNA DNA -71 63 10 382 279 0 73 chr13 32153021 32153157 -87591741 - L2 LINE L2 0 3313 3188 812 157 54 7 chr13 32153275 32153422 -87591476 + FAM SINE Alu 18 171 -14 256 253 140 43 chr13 32153538 32153724 -87591174 - L2 LINE L2 -1177 2137 1934 239 312 65 0 chr13 32154443 32154536 -87590362 - L3b LINE CR1 -97 1486 1388 2479 77 0 3 chr13 32155297 32155608 -87589290 + AluSg SINE Alu 1 310 0 2002 156 0 0 chr13 32155616 32155917 -87588981 + AluJb SINE Alu 1 301 -11 694 229 45 22 chr13 32156436 32156615 -87588283 - MIR SINE MIR -74 188 6 303 302 58 0 chr13 32156667 32156753 -87588145 - L2 LINE L2 -19 3294 3204 2135 91 0 88 chr13 32156898 32157227 -87587671 + AluSx SINE Alu 1 300 -12 241 275 47 123 chr13 32157462 32157698 -87587200 - L2 LINE L2 -209 3063 2846 248 320 46 39 chr13 32157924 32158077 -87586821 - MER103 DNA DNA -12 154 1 2255 109 3 3 chr13 32158252 32158563 -87586335 + AluSx SINE Alu 1 311 -1 283 301 48 41 chr13 32159228 32159374 -87585524 + L2 LINE L2 3117 3263 -50 668 161 0 88 chr13 32160045 32160182 -87584716 + FLAM_C SINE Alu 1 125 -8 2116 124 6 43 chr13 32160256 32160578 -87584320 + AluSx SINE Alu 1 310 -2 180 0 0 0 chr13 32161922 32161942 -87582956 + (TA)n Simple_repeat Simple_repeat 2 21 0 330 26 0 0 chr13 32162014 32162053 -87582845 + (TA)n Simple_repeat Simple_repeat 1 39 0 225 0 0 0 chr13 32162259 32162284 -87582614 + (A)n Simple_repeat Simple_repeat 1 25 0 2346 87 30 0 chr13 32162370 32162670 -87582228 + AluSx SINE Alu 1 309 -3 30 0 0 0 chr13 32162670 32162700 -87582198 + AT_rich Low_complexity Low_complexity 1 30 0 1430 208 31 10 chr13 32163809 32164098 -87580800 - AluJo SINE Alu -17 295 1 262 236 85 66 chr13 32164186 32164292 -87580606 - L2 LINE L2 -15 3257 3150 2237 187 52 14 chr13 32164332 32164770 -87580128 - LTR32 LTR ERVL 0 471 17 2359 95 0 7 chr13 32165746 32166052 -87578846 - AluSq SINE Alu -9 304 1 2259 113 0 0 chr13 32169493 32169786 -87575112 - AluSx SINE Alu -19 293 1 215 294 76 0 chr13 32170546 32170638 -87574260 + MIR SINE MIR 94 192 -70 188 254 36 0 chr13 32170829 32170884 -87574014 - MIR SINE MIR -119 143 87 999 211 25 5 chr13 32171370 32171574 -87573324 - MER3 DNA MER1_type -1 208 1 26 30 0 0 chr13 32172479 32172512 -87572386 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr13 32173126 32173146 -87571752 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1532 160 7 44 chr13 32173149 32173442 -87571456 - AluJo SINE Alu -25 287 6 820 176 0 0 chr13 32173465 32173590 -87571308 - AluJb SINE Alu -187 125 1 793 287 61 32 chr13 32174050 32174426 -87570472 + L1MEc LINE L1 92 478 -5918 1987 215 64 16 chr13 32174447 32174885 -87570013 + LTR40b LTR ERVL 4 462 0 486 243 36 0 chr13 32174886 32174997 -87569901 + HERVL40 LTR ERVL 1 115 -5415 1422 215 120 3 chr13 32174999 32175324 -87569574 - MLT1A1 LTR MaLR 0 365 3 719 231 143 37 chr13 32175336 32175552 -87569346 + HERVL40 LTR ERVL 114 352 -5178 1629 240 120 10 chr13 32175559 32176374 -87568524 + L1ME1 LINE L1 4920 5830 -332 1587 142 21 31 chr13 32176379 32176667 -87568231 + L1MA9 LINE L1 5750 6034 -278 473 252 18 87 chr13 32176672 32176707 -87568191 + L1ME1 LINE L1 5832 5868 -298 2362 83 0 22 chr13 32176707 32177020 -87567878 + AluY SINE Alu 1 306 -5 473 252 18 87 chr13 32177020 32177202 -87567696 + L1ME1 LINE L1 5868 6034 -132 2379 151 17 18 chr13 32177228 32177754 -87567144 - L1MA9 LINE L1 -4 6296 5673 2264 88 3 10 chr13 32177760 32178057 -87566841 - AluY SINE Alu -16 295 1 398 214 106 4 chr13 32178065 32178187 -87566711 + L1ME1 LINE L1 6050 6334 0 437 195 48 22 chr13 32178199 32178357 -87566541 + L1MC4 LINE L1 6879 7039 -956 780 306 50 55 chr13 32178612 32179070 -87565828 + LTR16B LTR ERVL 9 464 0 515 321 19 19 chr13 32179127 32179342 -87565556 - L3 LINE CR1 -754 823 609 1769 126 6 94 chr13 32179743 32180085 -87564813 + LTR1B LTR ERV1 1 312 -514 2602 143 69 7 chr13 32180219 32180680 -87564218 + LTR1B LTR ERV1 337 826 0 4704 162 60 0 chr13 32180799 32181780 -87563118 + L1MB7 LINE L1 5149 6183 -1 275 296 74 30 chr13 32181857 32181992 -87562906 + MIR3 SINE MIR 37 177 -31 491 325 66 0 chr13 32182125 32182291 -87562607 + MIR SINE MIR 35 211 -51 656 227 0 8 chr13 32182910 32183042 -87561856 + FLAM_A SINE Alu 1 131 -2 2070 121 13 10 chr13 32183444 32183742 -87561156 + AluSx SINE Alu 1 299 -13 648 190 145 10 chr13 32183752 32183951 -87560947 - MIR SINE MIR 0 262 35 622 270 48 70 chr13 32185381 32185801 -87559097 + L2 LINE L2 2845 3249 -23 21 0 0 0 chr13 32187269 32187290 -87557608 + AT_rich Low_complexity Low_complexity 1 21 0 2506 37 31 0 chr13 32187934 32188228 -87556670 + AluY SINE Alu 1 303 -8 416 314 57 23 chr13 32188775 32188950 -87555948 + MER5A DNA MER1_type 6 186 -3 243 294 171 14 chr13 32189143 32189289 -87555609 + MIR SINE MIR 79 247 -15 1942 130 7 17 chr13 32189593 32189886 -87555012 - AluJo SINE Alu -16 296 7 429 332 29 46 chr13 32190476 32190714 -87554184 + MIR SINE MIR 28 261 -1 2527 172 84 32 chr13 32191509 32191865 -87553033 - L1MA9 LINE L1 -23 6143 5807 321 26 0 0 chr13 32191865 32191903 -87552995 + (TG)n Simple_repeat Simple_repeat 1 38 0 2527 172 84 32 chr13 32191903 32191918 -87552980 - L1MA9 LINE L1 -359 5807 5794 2246 117 0 0 chr13 32191918 32192225 -87552673 - AluSx SINE Alu -5 307 1 2527 172 84 32 chr13 32192225 32192490 -87552408 - L1MA9 LINE L1 -372 5794 5477 1931 135 3 46 chr13 32193549 32193874 -87551024 - AluSp SINE Alu -2 311 1 275 227 0 30 chr13 32193961 32194027 -87550871 + L2 LINE L2 3250 3313 0 930 291 126 22 chr13 32194325 32194527 -87550371 + L2 LINE L2 2823 3003 -310 1645 226 44 14 chr13 32194527 32194890 -87550008 + MLT1A2 LTR MaLR 1 374 0 930 291 126 22 chr13 32194890 32195131 -87549767 + L2 LINE L2 3003 3312 -1 240 35 0 0 chr13 32195217 32195246 -87549652 + (TAA)n Simple_repeat Simple_repeat 3 31 0 2159 119 7 0 chr13 32195316 32195618 -87549280 + AluSx SINE Alu 1 304 -8 374 292 29 64 chr13 32196089 32196260 -87548638 + MIR3 SINE MIR 37 201 -7 189 243 271 22 chr13 32196555 32196736 -87548162 + MIR SINE MIR 8 233 -29 202 188 31 16 chr13 32197046 32197110 -87547788 + (CA)n Simple_repeat Simple_repeat 2 66 0 241 302 0 0 chr13 32197120 32197183 -87547715 + MER5A DNA MER1_type 127 189 0 242 310 90 1 chr13 32197246 32197378 -87547520 + MIR SINE MIR 6 147 -75 479 307 59 7 chr13 32197837 32197990 -87546908 + MER91A DNA MER1_type 1 161 -35 207 283 0 0 chr13 32198016 32198062 -87546836 + MER91A DNA MER1_type 151 196 0 315 49 0 0 chr13 32198175 32198216 -87546682 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 270 329 94 41 chr13 32198217 32198387 -87546511 - L2 LINE L2 -14 3258 3080 1817 175 3 10 chr13 32198679 32198982 -87545916 + AluJo SINE Alu 1 301 -11 557 90 0 0 chr13 32199097 32199175 -87545723 - MADE1 DNA Mariner -2 78 1 25 51 0 0 chr13 32199183 32199222 -87545676 + AT_rich Low_complexity Low_complexity 1 39 0 1000 203 6 0 chr13 32200011 32200188 -87544710 - MER45A DNA AcHobo 0 178 1 298 257 0 14 chr13 32200499 32200569 -87544329 - MIR3 SINE MIR -3 205 137 1952 66 0 4 chr13 32200880 32201121 -87543777 + AluY SINE Alu 71 310 -1 1064 214 13 9 chr13 32201267 32201496 -87543402 - MIR SINE MIR -21 241 12 676 139 131 0 chr13 32202012 32202134 -87542764 + FLAM_C SINE Alu 1 138 -5 1102 162 25 34 chr13 32202420 32202624 -87542274 - AluJb SINE Alu -21 291 90 1362 130 190 8 chr13 32203564 32203817 -87541081 + AluSg SINE Alu 1 299 -1 2305 109 0 0 chr13 32205459 32205762 -87539136 - AluSx SINE Alu -9 303 1 496 327 18 65 chr13 32206580 32206855 -87538043 - MIR SINE MIR 0 262 1 2618 209 58 21 chr13 32207052 32207675 -87537223 + MER82 DNA MER2_type 8 653 0 2341 172 14 2 chr13 32208830 32209267 -87535631 - L1MB2 LINE L1 -2 6169 5728 1033 293 36 38 chr13 32209393 32209892 -87535006 + L2 LINE L2 2810 3307 -6 948 288 8 4 chr13 32209891 32210134 -87534764 - MIR SINE MIR -13 249 6 * 906 103 7 0 chr13 32212343 32212488 -87532410 - L1MC1 LINE L1 -361 5972 5827 2721 211 54 24 chr13 32212492 32214173 -87530725 + L1MD1 LINE L1 1838 3608 -2932 * 3869 172 55 26 chr13 32214169 32214328 -87530570 + L1MD1 LINE L1 5522 5675 -961 189 0 0 0 chr13 32214328 32214349 -87530549 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3869 172 55 26 chr13 32214349 32214435 -87530463 + L1MD1 LINE L1 5675 5757 -879 2175 137 0 3 chr13 32214435 32214748 -87530150 + AluSx SINE Alu 1 312 0 3869 172 55 26 chr13 32214748 32215493 -87529405 + L1MD1 LINE L1 5757 6555 -81 2414 42 0 0 chr13 32215773 32216080 -87528818 + AluY SINE Alu 2 308 0 200 288 0 45 chr13 32216807 32216873 -87528025 - L2 LINE L2 0 3313 3251 2346 204 28 59 chr13 32217255 32218637 -87526261 + L1MB8 LINE L1 4856 6178 0 26897 108 10 9 chr13 32218656 32222861 -87522037 + L1P LINE L1 11 4219 -1927 10228 73 0 0 chr13 32223013 32225155 -87519743 + L1PA6 LINE L1 4010 6154 0 231 336 96 0 chr13 32225219 32225323 -87519575 + MIR SINE MIR 20 133 -129 941 296 69 17 chr13 32226499 32226961 -87517937 + MER20B DNA MER1_type 1 486 -297 482 192 130 11 chr13 32227606 32227783 -87517115 + MER20B DNA MER1_type 522 719 -64 422 284 73 65 chr13 32228109 32228347 -87516551 - MIR SINE MIR 0 262 21 354 209 0 0 chr13 32228635 32228702 -87516196 + MER33 DNA MER1_type 2 68 -256 2481 67 3 0 chr13 32228722 32229022 -87515876 + AluSp SINE Alu 1 301 -12 2733 174 25 3 chr13 32229024 32229706 -87515192 + L1MA4 LINE L1 4789 5484 -745 * 3662 88 6 37 chr13 32229701 32230362 -87514536 + L1MA1 LINE L1 5137 5785 -517 602 54 0 3 chr13 32230363 32230585 -87514313 + AluY SINE Alu 1 295 -17 3171 88 10 83 chr13 32230587 32230986 -87513912 + L1MA1 LINE L1 5769 6115 -187 2404 46 0 0 chr13 32230986 32231267 -87513631 - AluY SINE Alu -30 281 1 3171 88 10 83 chr13 32231267 32231443 -87513455 + L1MA1 LINE L1 6115 6302 0 3934 155 27 10 chr13 32231459 32232226 -87512672 + L1MA4 LINE L1 5477 6256 -44 1005 139 71 52 chr13 32232286 32232553 -87512345 + MER33 DNA MER1_type 53 324 0 291 298 58 25 chr13 32232701 32232822 -87512076 + MIR SINE MIR 67 191 -71 182 263 221 0 chr13 32232826 32232921 -87511977 - L2 LINE L2 -1 3312 3197 2334 119 0 0 chr13 32235121 32235432 -87509466 + AluSx SINE Alu 1 311 -1 257 278 56 74 chr13 32235481 32235643 -87509255 + MIR SINE MIR 91 249 -13 348 262 24 0 chr13 32235811 32235895 -87509003 - L2 LINE L2 -1 3271 3186 566 51 0 13 chr13 32235916 32235995 -87508903 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 265 288 54 45 chr13 32236751 32236862 -87508036 + L2 LINE L2 3198 3309 -4 1832 178 68 36 chr13 32238080 32238523 -87506375 + LTR2B LTR ERV1 34 490 0 1674 163 27 14 chr13 32241043 32241337 -87503561 + AluJb SINE Alu 1 298 -14 921 284 93 99 chr13 32241399 32241828 -87503070 + L2 LINE L2 1862 2292 -1022 856 123 7 43 chr13 32241828 32241966 -87502932 - FLAM_C SINE Alu 0 133 1 921 284 93 99 chr13 32241966 32242454 -87502444 + L2 LINE L2 2292 2773 -541 336 225 56 0 chr13 32242503 32242574 -87502324 + MIR SINE MIR 78 152 -56 25 0 0 0 chr13 32243398 32243423 -87501475 + AT_rich Low_complexity Low_complexity 1 25 0 981 150 14 59 chr13 32243981 32244147 -87500751 + L1MB3 LINE L1 5974 6129 -54 2376 78 3 0 chr13 32244147 32244443 -87500455 + AluY SINE Alu 1 297 -14 981 150 14 59 chr13 32244443 32244496 -87500402 + L1MB3 LINE L1 6129 6183 0 2315 103 0 16 chr13 32244654 32244964 -87499934 + AluSg SINE Alu 1 305 -5 1721 175 3 14 chr13 32245534 32245825 -87499073 + AluJb SINE Alu 1 288 -24 2021 158 60 26 chr13 32246611 32247029 -87497869 - MSTB1 LTR MaLR 0 432 1 950 111 53 5 chr13 32249110 32249300 -87495598 - L1MA6 LINE L1 -4 6296 6098 8425 162 35 11 chr13 32249302 32251597 -87493301 - L1MA6 LINE L1 -285 6015 3672 215 309 59 70 chr13 32251756 32251920 -87492978 - L2 LINE L2 -212 3060 2899 1702 177 10 13 chr13 32251920 32252230 -87492668 - AluJo SINE Alu -3 309 1 215 309 59 70 chr13 32252230 32252321 -87492577 - L2 LINE L2 -373 2899 2808 213 244 24 61 chr13 32252906 32252988 -87491910 - L2 LINE L2 -1355 1959 1881 381 352 56 11 chr13 32253600 32253779 -87491119 + MIR SINE MIR 1 187 -75 974 288 136 0 chr13 32255197 32255513 -87489385 + LTR16B LTR ERVL 106 464 0 214 378 0 54 chr13 32255557 32255668 -87489230 - MIR SINE MIR -69 139 35 230 282 14 14 chr13 32255673 32255744 -87489154 - L2 LINE L2 -2 3311 3241 376 355 18 0 chr13 32255753 32255922 -87488976 - L2 LINE L2 -568 2746 2575 181 258 81 0 chr13 32255979 32256041 -87488857 - L2 LINE L2 -31 3282 3216 426 223 32 0 chr13 32256607 32256701 -87488197 + MER58B DNA MER1_type 20 116 -225 1976 109 25 0 chr13 32256702 32256822 -87488076 + AluSc SINE Alu 1 116 -197 180 0 0 0 chr13 32256822 32256842 -87488056 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1976 109 25 0 chr13 32256842 32257027 -87487871 + AluSc SINE Alu 116 313 0 1134 135 79 68 chr13 32257242 32257303 -87487595 - MLT1B LTR MaLR 0 390 331 2211 109 0 0 chr13 32257303 32257612 -87487286 - AluSx SINE Alu 0 309 1 1134 135 79 68 chr13 32257612 32257814 -87487084 - MLT1B LTR MaLR -59 331 122 1023 167 69 0 chr13 32257798 32257972 -87486926 + MLT1A1 LTR MaLR 109 294 -71 * 536 216 0 0 chr13 32258009 32258106 -87486792 + MER58B DNA MER1_type 239 335 -6 260 335 116 8 chr13 32258274 32258516 -87486382 + HAL1b LINE L1 110 377 -971 604 294 35 75 chr13 32258520 32258672 -87486226 + HAL1b LINE L1 437 593 -755 1953 174 46 3 chr13 32258672 32259022 -87485876 - MLT1A1 LTR MaLR 0 365 1 604 294 35 75 chr13 32259022 32259376 -87485522 + HAL1b LINE L1 593 923 -425 998 82 0 0 chr13 32259386 32259521 -87485377 - AluY SINE Alu -3 308 174 409 204 142 28 chr13 32259522 32259698 -87485200 + HAL1b LINE L1 910 1105 -243 213 296 0 0 chr13 32259727 32259771 -87485127 - MER91A DNA MER1_type 0 196 153 215 283 83 0 chr13 32259870 32259930 -87484968 - MER91A DNA MER1_type -114 82 18 1188 106 0 12 chr13 32259938 32260098 -87484800 - AluSg SINE Alu -8 304 147 426 123 0 0 chr13 32260101 32260166 -87484732 - AluSg SINE Alu -253 65 1 1884 245 43 28 chr13 32260213 32260792 -87484106 - L1ME1 LINE L1 -7 6553 5966 769 277 88 22 chr13 32260789 32261297 -87483601 - L1ME1 LINE L1 -4517 2023 1546 * 2138 103 3 20 chr13 32261331 32261632 -87483266 + AluSc SINE Alu 3 298 -11 1429 232 16 19 chr13 32261979 32262381 -87482517 + L1ME1 LINE L1 5769 6161 -5 460 254 37 15 chr13 32262473 32262607 -87482291 - MIR SINE MIR -19 243 107 1904 176 33 43 chr13 32263517 32264074 -87480824 - MLT2A2 LTR ERVL 0 554 1 2721 191 4 4 chr13 32264217 32264703 -87480195 - MER66B LTR ERV1 0 486 1 1969 142 10 0 chr13 32264855 32265144 -87479754 + AluSq SINE Alu 1 292 -21 312 91 0 0 chr13 32265144 32265188 -87479710 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 487 236 31 21 chr13 32265225 32265416 -87479482 + L1MC5 LINE L1 7725 7917 -44 193 296 244 61 chr13 32265666 32265691 -87479207 - L2 LINE L2 -1 3271 3252 1806 136 50 4 chr13 32265691 32265971 -87478927 + AluSx SINE Alu 1 293 -19 193 296 244 61 chr13 32265971 32266060 -87478838 - L2 LINE L2 -20 3252 3136 396 300 198 55 chr13 32266111 32266319 -87478579 + L2 LINE L2 2437 2614 -700 2465 62 10 0 chr13 32266319 32266625 -87478273 - AluY SINE Alu -2 309 1 396 300 198 55 chr13 32266625 32266816 -87478082 + L2 LINE L2 2614 2893 -421 21 71 0 0 chr13 32267027 32267069 -87477829 + AT_rich Low_complexity Low_complexity 1 42 0 364 286 40 16 chr13 32267137 32267263 -87477635 + MIR SINE MIR 107 235 -27 435 266 42 10 chr13 32267443 32267635 -87477263 - L1MC5 LINE L1 -40 7921 7724 2813 106 0 92 chr13 32268123 32268663 -87476235 - MER1A DNA MER1_type -39 494 1 394 226 108 0 chr13 32268812 32268914 -87475984 - MIR SINE MIR -20 242 130 192 360 65 49 chr13 32269135 32269460 -87475438 + L2 LINE L2 2175 2504 -810 1654 203 7 73 chr13 32269485 32269909 -87474989 + MSTD LTR MaLR 1 396 0 606 308 31 18 chr13 32270217 32270441 -87474457 - MIR SINE MIR -24 238 12 191 333 74 0 chr13 32270644 32270725 -87474173 - L2 LINE L2 -5 3267 3181 253 295 58 58 chr13 32270775 32270931 -87473967 - MIR SINE MIR -75 187 32 198 0 0 0 chr13 32271007 32271029 -87473869 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6936 45 2 0 chr13 32271038 32272275 -87472623 - L1PA7 LINE L1 -7 6147 4926 21 0 0 0 chr13 32273094 32273115 -87471783 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 32273279 32273314 -87471584 + AT_rich Low_complexity Low_complexity 1 35 0 450 118 0 0 chr13 32273314 32273390 -87471508 - L1MA2 LINE L1 0 6304 6229 26 0 0 0 chr13 32273417 32273443 -87471455 + AT_rich Low_complexity Low_complexity 1 26 0 658 210 12 119 chr13 32273509 32273752 -87471146 - MER20 DNA MER1_type -2 217 1 248 234 125 0 chr13 32274224 32274288 -87470610 - L2 LINE L2 0 3272 3201 328 294 59 7 chr13 32274383 32274519 -87470379 - MIR SINE MIR -71 191 49 574 167 0 0 chr13 32274525 32274615 -87470283 - LOR1b LTR ERV1 0 461 372 509 213 37 0 chr13 32274627 32274735 -87470163 + LOR1b LTR ERV1 348 459 -2 10290 139 26 13 chr13 32274737 32276457 -87468441 + LOR1a-int LTR ERV1 1 1743 -6377 8223 132 40 22 chr13 32276458 32276800 -87468098 + LOR1a-int LTR ERV1 2621 2955 -3803 2348 97 3 3 chr13 32276800 32277109 -87467789 + AluSc SINE Alu 1 309 0 8223 132 40 22 chr13 32277109 32278251 -87466647 + LOR1a-int LTR ERV1 2955 6166 -592 1610 153 8 0 chr13 32278432 32278680 -87466218 + LOR1a-int LTR ERV1 6830 7079 -1041 960 198 12 0 chr13 32278703 32278870 -87466028 + MER49 LTR ERV1 1 169 -754 720 112 0 19 chr13 32278870 32278977 -87465921 + LOR1a-int LTR ERV1 7995 8099 -21 2740 128 25 73 chr13 32278990 32279512 -87465386 + LOR1a LTR ERV1 1 497 0 497 244 87 17 chr13 32279605 32279835 -87465063 - Charlie2 DNA MER1_type -6 2856 2611 1913 165 0 0 chr13 32279851 32280136 -87464762 + AluJb SINE Alu 1 285 -27 1614 246 49 65 chr13 32280145 32280837 -87464061 + L1MC5 LINE L1 5187 5323 -823 2866 117 26 7 chr13 32280837 32281257 -87463641 + MSTA LTR MaLR 1 428 0 1614 246 49 65 chr13 32281257 32281326 -87463572 + L1MC5 LINE L1 5323 5392 -754 21 57 0 0 chr13 32281528 32281563 -87463335 + AT_rich Low_complexity Low_complexity 1 35 0 1915 223 55 83 chr13 32281773 32282820 -87462078 + L1MC5 LINE L1 6476 7492 -469 341 216 29 29 chr13 32282871 32282973 -87461925 + L1MC5 LINE L1 7481 7582 -379 1796 60 0 21 chr13 32282996 32283230 -87461668 + AluY SINE Alu 82 310 -1 192 77 0 0 chr13 32283348 32283374 -87461524 + (A)n Simple_repeat Simple_repeat 1 26 0 898 223 31 21 chr13 32283384 32283675 -87461223 + L1MC5 LINE L1 7620 7913 -48 470 216 92 78 chr13 32283689 32284059 -87460839 - Charlie2 DNA MER1_type -246 2616 2242 2271 164 40 16 chr13 32284788 32285238 -87459660 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr13 32285343 32285365 -87459533 + AT_rich Low_complexity Low_complexity 1 22 0 3225 167 43 53 chr13 32285409 32286128 -87458770 + LTR8A LTR ERV1 1 712 -15 1511 138 113 3 chr13 32287676 32287959 -87456939 - MER44D DNA MER2_type -25 584 1 640 245 50 0 chr13 32288424 32288583 -87456315 + MIR SINE MIR 71 237 -25 228 290 0 0 chr13 32288596 32288658 -87456240 + (TTG)n Simple_repeat Simple_repeat 3 64 0 321 319 163 43 chr13 32289207 32289859 -87455039 + L2 LINE L2 1837 2566 -748 298 329 77 21 chr13 32290020 32290163 -87454735 + L2 LINE L2 2911 3061 -211 4071 157 62 31 chr13 32291662 32292463 -87452435 + LTR1B LTR ERV1 1 826 0 269 140 20 20 chr13 32292645 32292695 -87452203 + L2 LINE L2 3264 3313 0 2719 58 137 2 chr13 32293275 32293670 -87451228 - LTR7 LTR ERV1 -2 448 1 230 247 241 25 chr13 32293678 32293762 -87451136 - MIR SINE MIR 0 262 197 4175 91 4 0 chr13 32293762 32294314 -87450584 + MER41A LTR ERV1 1 554 0 230 247 241 25 chr13 32294314 32294387 -87450511 - MIR SINE MIR -65 197 71 506 161 54 9 chr13 32294790 32294902 -87449996 + L1MC2 LINE L1 6083 6199 -145 660 132 81 0 chr13 32294971 32295107 -87449791 + L1MC2 LINE L1 6198 6344 0 503 295 61 64 chr13 32295573 32295868 -87449030 + L2 LINE L2 3020 3313 0 240 143 18 36 chr13 32296679 32296735 -87448163 - L1MB3 LINE L1 -20 6163 6109 24 0 0 0 chr13 32297171 32297195 -87447703 + AT_rich Low_complexity Low_complexity 1 24 0 368 155 48 48 chr13 32297203 32297371 -87447527 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 314 184 34 45 chr13 32297314 32297493 -87447405 + (TTA)n Simple_repeat Simple_repeat 3 179 0 * 113 81 0 0 chr13 32297493 32297753 -87447145 + AT_rich Low_complexity Low_complexity 1 260 0 189 107 0 0 chr13 32297796 32297824 -87447074 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1067 118 82 9 chr13 32300300 32300520 -87444378 + AluSx SINE Alu 32 267 -45 1262 77 0 6 chr13 32300666 32300847 -87444051 + (TTC)n Simple_repeat Simple_repeat 1 180 0 183 80 0 0 chr13 32300847 32300872 -87444026 + (TCTCCC)n Simple_repeat Simple_repeat 4 28 0 1651 164 61 3 chr13 32300874 32301167 -87443731 - AluJo SINE Alu -2 310 1 799 174 31 31 chr13 32301174 32301335 -87443563 - MLT1A2 LTR MaLR -213 161 1 1563 158 31 4 chr13 32302198 32302457 -87442441 - AluSq SINE Alu -7 306 41 18966 55 5 2 chr13 32302457 32304913 -87439985 - L1PA6 LINE L1 -946 5200 2740 7067 57 0 2 chr13 32304913 32305885 -87439013 + L1PA6 LINE L1 5182 6151 -3 290 203 0 0 chr13 32305903 32305962 -87438936 - AluSq SINE Alu -249 59 1 284 319 141 5 chr13 32306258 32306443 -87438455 - MIR SINE MIR -6 256 47 5745 184 55 46 chr13 32306959 32307959 -87436939 + Charlie1a DNA MER1_type 6 1023 -1738 1670 167 47 0 chr13 32307959 32308234 -87436664 + AluJb SINE Alu 11 298 -14 5745 184 55 46 chr13 32308234 32308664 -87436234 + Charlie1a DNA MER1_type 1023 1448 -7 2432 154 14 30 chr13 32308702 32309143 -87435755 - Tigger2a DNA MER2_type 0 434 1 235 314 93 42 chr13 32309245 32309363 -87435535 + MLT1K LTR MaLR 66 189 -399 287 264 107 16 chr13 32309419 32309540 -87435358 + MLT1K LTR MaLR 295 426 -162 2091 145 0 49 chr13 32309866 32310231 -87434667 - MER7A DNA MER2_type 0 346 2 878 291 89 54 chr13 32311564 32311993 -87432905 + MLT1K LTR MaLR 85 528 -60 2060 131 0 10 chr13 32312147 32312444 -87432454 + AluSx SINE Alu 1 294 -18 2158 129 0 3 chr13 32313578 32313889 -87431009 - AluSq SINE Alu -3 310 1 1235 150 5 0 chr13 32313935 32314128 -87430770 + MLT1C LTR MaLR 272 465 -2 844 171 21 0 chr13 32314131 32314271 -87430627 + MER58B DNA MER1_type 194 336 -5 312 297 62 23 chr13 32316194 32316322 -87428576 + MIR SINE MIR 61 193 -69 222 191 0 0 chr13 32317175 32317222 -87427676 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 215 100 75 12 chr13 32317257 32317337 -87427561 + (TA)n Simple_repeat Simple_repeat 2 86 0 24 77 0 0 chr13 32317345 32317397 -87427501 + AT_rich Low_complexity Low_complexity 1 52 0 562 165 0 0 chr13 32317797 32317888 -87427010 + MER33 DNA MER1_type 29 119 -205 972 176 0 33 chr13 32317915 32318097 -87426801 + FRAM SINE Alu 1 176 0 725 133 19 13 chr13 32318099 32318257 -87426641 + MER33 DNA MER1_type 139 297 -27 261 0 0 0 chr13 32319130 32319159 -87425739 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1178 124 173 24 chr13 32320077 32320326 -87424572 + MER31A LTR ERV1 1 286 -199 952 105 13 0 chr13 32320326 32320478 -87424420 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 853 95 0 0 chr13 32320505 32320610 -87424288 - AluSq/x SINE Alu -207 105 1 769 135 24 0 chr13 32320617 32320743 -87424155 + MER31A LTR ERV1 287 415 -70 2353 154 21 34 chr13 32323325 32323799 -87421099 - L1MC1 LINE L1 -5 6328 5861 295 315 0 0 chr13 32323874 32323963 -87420935 + MIR SINE MIR 75 163 -99 291 316 77 0 chr13 32323989 32324106 -87420792 + MIR SINE MIR 120 245 -17 825 336 33 4 chr13 32324139 32324410 -87420488 + LTR33 LTR ERVL 1 279 -242 1580 139 14 11 chr13 32325833 32326113 -87418785 - L1MA8 LINE L1 0 6291 6011 1882 160 0 3 chr13 32326151 32326439 -87418459 - AluJo SINE Alu -22 290 4 32 0 0 0 chr13 32326602 32326634 -87418264 + AT_rich Low_complexity Low_complexity 1 32 0 314 383 8 0 chr13 32327298 32327418 -87417480 - L1M4 LINE L1 -2311 3835 3715 268 276 0 0 chr13 32327522 32327580 -87417318 + L2 LINE L2 3251 3308 -5 709 312 24 12 chr13 32327679 32327926 -87416972 + MIR SINE MIR 13 262 0 38 22 0 0 chr13 32328847 32328892 -87416006 + AT_rich Low_complexity Low_complexity 1 45 0 188 159 0 23 chr13 32329289 32329333 -87415565 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 232 109 0 0 chr13 32329339 32329385 -87415513 + LTR66 LTR ERVL 394 439 -171 1549 190 10 17 chr13 32329397 32329692 -87415206 - AluJo SINE Alu -19 293 1 351 234 32 11 chr13 32330033 32330127 -87414771 + MIR SINE MIR 78 173 -89 251 353 133 47 chr13 32330606 32331028 -87413870 - L2 LINE L2 0 3272 2815 232 266 48 77 chr13 32331275 32331482 -87413416 - L1ME3A LINE L1 -8 6162 5962 2247 229 86 57 chr13 32331622 32332072 -87412826 - L1MC5 LINE L1 -481 7480 7045 2278 133 37 3 chr13 32332072 32332424 -87412474 + THE1B LTR MaLR 1 364 0 2247 229 86 57 chr13 32332424 32332954 -87411944 - L1MC5 LINE L1 -916 7045 6476 243 385 27 27 chr13 32333317 32333616 -87411282 - HAL1b LINE L1 -834 514 216 2170 114 3 10 chr13 32336053 32336351 -87408547 + AluSq SINE Alu 3 298 -15 185 362 0 17 chr13 32338326 32338384 -87406514 + L2 LINE L2 3211 3267 -5 245 312 201 0 chr13 32338515 32338669 -87406229 - MIR SINE MIR -21 241 57 2392 77 0 0 chr13 32339891 32340188 -87404710 - AluY SINE Alu -14 297 1 1887 214 122 10 chr13 32340258 32340856 -87404042 + L1M4 LINE L1 4349 5013 -1133 743 172 59 18 chr13 32340964 32341133 -87403765 + L1M4 LINE L1 5166 5341 -805 459 180 22 0 chr13 32341218 32341307 -87403591 - Tigger7 DNA MER2_type -1 2586 2496 * 1254 175 73 14 chr13 32341306 32341756 -87403142 - Tigger7 DNA MER2_type -212 521 8 370 343 181 16 chr13 32341781 32342146 -87402752 - L2 LINE L2 -1842 1472 1048 246 279 16 0 chr13 32344998 32345059 -87399839 - MER5A DNA MER1_type -120 69 8 2318 80 6 13 chr13 32345995 32346170 -87398728 - AluY SINE Alu -2 309 135 2046 108 3 17 chr13 32346170 32346489 -87398409 - AluSp SINE Alu 0 313 1 2318 80 6 13 chr13 32346489 32346624 -87398274 - AluY SINE Alu -176 135 1 2481 132 27 41 chr13 32346760 32347198 -87397700 + MSTB1 LTR MaLR 1 432 0 995 101 14 0 chr13 32347880 32348018 -87396880 - AluSg/x SINE Alu -17 293 154 22 35 0 0 chr13 32349177 32349206 -87395692 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 32349849 32349870 -87395028 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 32350035 32350070 -87394828 + AT_rich Low_complexity Low_complexity 1 35 0 602 233 30 8 chr13 32350586 32350719 -87394179 + MER5A DNA MER1_type 12 147 -42 12246 139 23 4 chr13 32350751 32352673 -87392225 - Tigger4(Zombi) DNA MER2_type -769 1962 5 1823 211 43 85 chr13 32352677 32352811 -87392087 + L1ME4a LINE L1 2138 2276 -3870 2054 139 3 0 chr13 32352811 32353114 -87391784 - AluSx SINE Alu 0 312 9 1823 211 43 85 chr13 32353114 32353705 -87391193 + L1ME4a LINE L1 2276 2832 -3314 443 189 106 23 chr13 32353710 32353842 -87391056 + L1MB7 LINE L1 6033 6175 -9 381 297 116 47 chr13 32353949 32354269 -87390629 + L1ME4a LINE L1 4479 4820 -1326 275 265 120 72 chr13 32354367 32354741 -87390157 + L1ME4a LINE L1 5617 6008 -113 27 29 0 0 chr13 32354766 32354800 -87390098 + AT_rich Low_complexity Low_complexity 1 34 0 2322 88 0 0 chr13 32354808 32355102 -87389796 - AluSc SINE Alu -15 294 1 22 80 0 0 chr13 32355184 32355234 -87389664 + AT_rich Low_complexity Low_complexity 1 50 0 665 255 62 21 chr13 32355608 32355800 -87389098 + MIR SINE MIR 63 262 0 246 325 58 52 chr13 32355830 32355984 -87388914 - MIR SINE MIR -5 257 103 418 248 12 56 chr13 32356121 32356288 -87388610 - MER5A DNA MER1_type -21 157 7 215 325 65 26 chr13 32356360 32356437 -87388461 - MIR SINE MIR -110 98 19 282 344 48 43 chr13 32356867 32357053 -87387845 + MIR SINE MIR 20 206 -56 229 190 17 35 chr13 32357274 32357332 -87387566 + MER45B DNA AcHobo 752 808 -232 1508 185 11 21 chr13 32357512 32357798 -87387100 - AluJo SINE Alu -21 291 9 1080 158 77 0 chr13 32357991 32358174 -87386724 - AluJb SINE Alu -11 301 105 220 316 0 0 chr13 32358397 32358454 -87386444 + CT-rich Low_complexity Low_complexity 3 59 0 220 330 62 10 chr13 32358782 32358879 -87386019 + L2 LINE L2 3164 3265 -7 676 221 51 67 chr13 32359419 32359614 -87385284 + MIR SINE MIR 66 257 -5 26 0 0 0 chr13 32359614 32359640 -87385258 + AT_rich Low_complexity Low_complexity 1 26 0 194 115 0 66 chr13 32359765 32359826 -87385072 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 1595 208 38 35 chr13 32360633 32360790 -87384108 + MLT1A2 LTR MaLR 11 166 -208 2178 102 0 10 chr13 32360790 32361085 -87383813 + AluSg SINE Alu 1 292 -18 1595 208 38 35 chr13 32361085 32361273 -87383625 + MLT1A2 LTR MaLR 166 357 -17 299 341 67 0 chr13 32363578 32363713 -87381185 + L2 LINE L2 2916 3059 -213 22 0 0 0 chr13 32363755 32363777 -87381121 + AT_rich Low_complexity Low_complexity 1 22 0 4978 163 50 30 chr13 32364241 32365155 -87379743 + L1MA4 LINE L1 4393 5288 -1012 2114 105 6 53 chr13 32365155 32365478 -87379420 + AluSx SINE Alu 1 308 -4 4978 163 50 30 chr13 32365478 32365961 -87378937 + L1MA4 LINE L1 5288 5834 -466 2369 76 17 0 chr13 32365961 32366263 -87378635 + AluY SINE Alu 5 311 0 4978 163 50 30 chr13 32366263 32366572 -87378326 + L1MA4 LINE L1 5834 6135 -165 192 77 0 0 chr13 32368176 32368202 -87376696 + (CA)n Simple_repeat Simple_repeat 1 26 0 300 264 298 6 chr13 32368680 32368846 -87376052 + MIR SINE MIR 1 223 -39 2348 83 0 13 chr13 32368846 32369158 -87375740 + AluY SINE Alu 1 308 -3 300 264 298 6 chr13 32369158 32369169 -87375729 + MIR SINE MIR 223 230 -32 2137 107 0 7 chr13 32369169 32369459 -87375439 + AluY SINE Alu 1 288 -23 1243 112 12 0 chr13 32369460 32369630 -87375268 + AluSg/x SINE Alu 133 304 -8 462 200 33 33 chr13 32369878 32369998 -87374900 + MER94 DNA DNA 15 134 0 469 305 51 13 chr13 32370578 32370784 -87374114 - MIR SINE MIR -44 218 7 699 56 0 11 chr13 32371552 32371642 -87373256 - MER4E LTR ERV1 0 766 678 649 116 42 0 chr13 32371692 32371787 -87373111 - MER4B LTR ERV1 -85 525 427 2689 110 6 88 chr13 32371854 32372353 -87372545 - MER4B LTR ERV1 -152 458 1 491 296 140 37 chr13 32372486 32372837 -87372061 - L2 LINE L2 0 3313 2927 300 328 17 17 chr13 32372833 32372949 -87371949 - L2 LINE L2 -25 3247 3132 * 2221 165 15 22 chr13 32373068 32373474 -87371424 + MER57A LTR ERV1 1 403 0 2363 118 25 3 chr13 32374374 32374739 -87370159 - MER39B LTR ERV1 -23 630 258 697 182 0 47 chr13 32374740 32374888 -87370010 - FLAM_C SINE Alu -2 141 1 1920 98 8 0 chr13 32374888 32375154 -87369744 - MER39B LTR ERV1 -385 268 1 323 256 83 38 chr13 32375163 32375296 -87369602 - MIR SINE MIR -14 248 110 291 213 43 64 chr13 32376153 32376247 -87368651 - MIR SINE MIR -150 112 21 21 0 0 0 chr13 32376342 32376363 -87368535 + AT_rich Low_complexity Low_complexity 1 21 0 399 41 0 0 chr13 32376659 32376708 -87368190 + (CA)n Simple_repeat Simple_repeat 2 50 0 442 288 29 14 chr13 32377677 32377816 -87367082 + MIR SINE MIR 16 156 -106 23 40 0 0 chr13 32378286 32378311 -87366587 + AT_rich Low_complexity Low_complexity 1 25 0 970 280 107 20 chr13 32378660 32379142 -87365756 + MLT1H LTR MaLR 1 537 -12 24 77 0 0 chr13 32380469 32380521 -87364377 + AT_rich Low_complexity Low_complexity 1 52 0 26 0 0 0 chr13 32380653 32380679 -87364219 + AT_rich Low_complexity Low_complexity 1 26 0 224 194 32 0 chr13 32381497 32381559 -87363339 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 383 265 82 14 chr13 32381857 32382004 -87362894 - MIR SINE MIR -94 168 12 319 243 27 14 chr13 32382028 32382102 -87362796 + MIR SINE MIR 40 114 -148 243 287 43 11 chr13 32384976 32385070 -87359828 + L1ME LINE L1 5524 5620 -501 612 80 0 0 chr13 32385595 32385683 -87359215 + L1PB2 LINE L1 5949 6036 -115 2410 134 36 3 chr13 32387659 32388048 -87356850 + MER57A LTR ERV1 2 403 0 844 239 96 31 chr13 32388125 32388447 -87356451 - MER2 DNA MER2_type 0 344 2 22 0 0 0 chr13 32388704 32388726 -87356172 + AT_rich Low_complexity Low_complexity 1 22 0 1721 166 0 21 chr13 32389246 32389535 -87355363 + AluJb SINE Alu 14 296 -16 2158 123 3 3 chr13 32389693 32389995 -87354903 - AluSg SINE Alu -8 302 1 2275 157 56 7 chr13 32390222 32390654 -87354244 + MSTB2 LTR MaLR 1 453 -4 1950 136 0 36 chr13 32391011 32391313 -87353585 - AluJo SINE Alu -21 291 1 1681 213 56 2 chr13 32392324 32392733 -87352165 + L1MC2 LINE L1 4811 5241 -905 * 5735 148 22 6 chr13 32392732 32394413 -87350485 + L1PB3 LINE L1 4441 6148 -6 32 0 0 0 chr13 32394415 32394447 -87350451 + AT_rich Low_complexity Low_complexity 1 32 0 5426 165 44 18 chr13 32394447 32395515 -87349383 + L1MC2 LINE L1 5237 6331 -13 400 249 249 35 chr13 32396632 32396728 -87348170 - MIR SINE MIR -11 251 177 2410 76 0 7 chr13 32396728 32397029 -87347869 + AluY SINE Alu 11 309 -2 400 249 249 35 chr13 32397029 32397133 -87347765 - MIR SINE MIR -85 177 8 1600 165 25 38 chr13 32398634 32398949 -87345949 - L1M3 LINE L1 -410 5773 5463 2340 122 51 25 chr13 32398949 32399341 -87345557 - MSTA LTR MaLR 0 428 27 357 127 14 42 chr13 32399342 32399413 -87345485 - L1M3 LINE L1 -859 5453 5385 636 165 0 0 chr13 32399559 32399656 -87345242 - AluJ/FLAM SINE Alu -213 99 3 199 114 0 0 chr13 32399730 32399765 -87345133 - MER5C DNA MER1_type -57 267 233 439 272 53 0 chr13 32399809 32399923 -87344975 - MER5C DNA MER1_type -204 120 1 747 288 60 21 chr13 32400172 32400293 -87344605 + MIR SINE MIR 17 132 -130 2187 128 0 3 chr13 32400293 32400597 -87344301 + AluSq SINE Alu 1 303 -10 747 288 60 21 chr13 32400597 32400711 -87344187 + MIR SINE MIR 132 262 0 507 256 141 13 chr13 32400705 32400932 -87343966 - L1M4 LINE L1 -2978 3168 2913 * 1095 215 30 70 chr13 32400937 32401374 -87343524 - MLT1D LTR MaLR 0 505 10 200 135 27 0 chr13 32401490 32401527 -87343371 + A-rich Low_complexity Low_complexity 1 38 0 2261 107 3 0 chr13 32401571 32401871 -87343027 - AluY SINE Alu -10 301 1 391 297 67 22 chr13 32401901 32402196 -87342702 + L1ME LINE L1 4147 4478 -1668 1739 185 11 0 chr13 32402196 32402482 -87342416 - AluJo SINE Alu -23 289 1 391 297 67 22 chr13 32402482 32402721 -87342177 + L1ME LINE L1 4478 4705 -1441 2530 33 0 20 chr13 32403080 32403380 -87341518 + AluY SINE Alu 1 294 -17 1181 276 68 43 chr13 32405234 32406164 -87338734 + L1MC4 LINE L1 7090 8042 0 259 289 56 0 chr13 32406273 32406363 -87338535 + MIR SINE MIR 59 153 -109 293 361 83 0 chr13 32406741 32406874 -87338024 - MIR3 SINE MIR -62 146 3 2244 93 0 3 chr13 32407238 32407529 -87337369 - AluY SINE Alu -11 300 11 2213 162 28 45 chr13 32407742 32407769 -87337129 + LOR1b LTR ERV1 1 27 -434 1736 168 42 30 chr13 32407769 32408102 -87336796 + MER1B DNA MER1_type 1 337 0 2213 162 28 45 chr13 32408102 32408543 -87336355 + LOR1b LTR ERV1 27 461 0 424 289 105 76 chr13 32408579 32409485 -87335413 + L1MEd LINE L1 326 1257 -4862 328 270 143 0 chr13 32409469 32409658 -87335240 + HAL1 LINE L1 1351 1566 -941 * 2120 140 0 19 chr13 32409658 32409973 -87334925 + AluSx SINE Alu 1 309 -3 421 132 44 0 chr13 32410103 32410171 -87334727 + AluJ/FLAM SINE Alu 1 71 -241 364 295 133 20 chr13 32410514 32410816 -87334082 + L1ME LINE L1 5302 5637 -529 2469 71 0 7 chr13 32410817 32411127 -87333771 - AluY SINE Alu -3 308 1 180 288 51 34 chr13 32413315 32413374 -87331524 - L2 LINE L2 -7 3265 3206 306 260 14 0 chr13 32413474 32413547 -87331351 - MER91B DNA MER1_type 0 190 117 299 215 139 90 chr13 32413549 32413693 -87331205 - MER91B DNA MER1_type -16 174 24 261 303 156 8 chr13 32414447 32414569 -87330329 - MIR SINE MIR -56 206 67 234 0 0 0 chr13 32415530 32415556 -87329342 + (TG)n Simple_repeat Simple_repeat 2 27 0 695 333 148 30 chr13 32415715 32416661 -87328237 - L2 LINE L2 -13 3300 2236 189 262 0 0 chr13 32417365 32417426 -87327472 + GA-rich Low_complexity Low_complexity 2 62 0 * 308 205 25 33 chr13 32417423 32417545 -87327353 + G-rich Low_complexity Low_complexity 5 125 0 207 167 0 0 chr13 32417537 32417579 -87327319 + GA-rich Low_complexity Low_complexity 4 45 0 * 291 367 24 101 chr13 32417885 32418223 -87326675 - L2 LINE L2 -1 3271 2960 258 281 110 0 chr13 32418479 32418561 -87326337 + MIR SINE MIR 166 256 -6 313 283 141 13 chr13 32418733 32418970 -87325928 - MLT1E2 LTR MaLR -369 257 6 406 325 154 31 chr13 32418977 32419359 -87325539 - L2 LINE L2 -15 3298 2870 522 223 97 34 chr13 32419524 32419699 -87325199 - L2 LINE L2 -11 3302 3117 322 380 22 0 chr13 32419956 32420140 -87324758 + L1ME2 LINE L1 179 366 -6030 295 233 17 89 chr13 32420780 32421016 -87323882 + L1ME2 LINE L1 2048 2266 -4130 1813 152 28 3 chr13 32421024 32421313 -87323585 + AluSq SINE Alu 1 296 -17 1425 215 65 123 chr13 32421335 32421513 -87323385 + L1ME2 LINE L1 2589 2776 -3439 2335 115 0 0 chr13 32421513 32421825 -87323073 - AluSx SINE Alu 0 312 1 1425 215 65 123 chr13 32421825 32422638 -87322260 + L1ME2 LINE L1 2776 3635 -2580 2450 69 0 10 chr13 32422638 32422944 -87321954 + AluY SINE Alu 1 303 -8 1425 215 65 123 chr13 32422944 32423045 -87321853 + L1ME2 LINE L1 3635 3740 -2475 2334 85 3 0 chr13 32423045 32423340 -87321558 - AluSq SINE Alu -10 303 8 1425 215 65 123 chr13 32423340 32423608 -87321290 + L1ME2 LINE L1 3740 3872 -2343 1861 89 89 7 chr13 32423611 32423882 -87321016 + AluY SINE Alu 14 306 -5 2419 80 0 0 chr13 32423882 32424184 -87320714 + AluSc SINE Alu 1 302 -7 1109 123 7 0 chr13 32424186 32424365 -87320533 + AluSg/x SINE Alu 128 307 0 521 279 93 37 chr13 32424526 32424741 -87320157 + L1ME2 LINE L1 5073 5299 -916 1508 200 59 75 chr13 32425002 32425562 -87319336 + L1ME2 LINE L1 5360 5910 -323 182 213 0 21 chr13 32426033 32426080 -87318818 - MIR SINE MIR -157 105 60 2474 73 7 0 chr13 32426534 32426837 -87318061 + AluSc SINE Alu 3 307 -2 5375 125 35 19 chr13 32427134 32428121 -87316777 + L1MA4 LINE L1 5290 6292 -8 2977 161 40 0 chr13 32429452 32430031 -87314867 + L1MB3 LINE L1 5572 6173 -10 298 145 58 0 chr13 32430241 32430310 -87314588 - AluSc SINE Alu -12 287 215 396 0 0 0 chr13 32430410 32430454 -87314444 + (CA)n Simple_repeat Simple_repeat 2 45 0 316 298 64 64 chr13 32431019 32431190 -87313708 + MIR SINE MIR 22 192 -70 230 310 108 19 chr13 32432370 32432528 -87312370 - MIR SINE MIR -79 183 12 1678 171 14 10 chr13 32433536 32433828 -87311070 - AluJo SINE Alu -19 293 1 252 281 56 11 chr13 32433849 32433938 -87310960 - L3b LINE CR1 -340 1243 1151 239 208 14 83 chr13 32434786 32434858 -87310040 + MIR3 SINE MIR 101 167 -41 220 326 96 30 chr13 32435715 32435851 -87309047 - MIR3 SINE MIR -73 135 14 207 167 0 0 chr13 32435986 32436028 -87308870 + GA-rich Low_complexity Low_complexity 3 44 0 346 256 67 110 chr13 32436540 32436756 -87308142 - MIR SINE MIR -8 254 44 180 47 47 47 chr13 32436789 32436832 -87308066 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 318 87 0 0 chr13 32436947 32436993 -87307905 + (CA)n Simple_repeat Simple_repeat 1 46 0 417 20 0 0 chr13 32437247 32437297 -87307601 + (TG)n Simple_repeat Simple_repeat 2 51 0 679 137 77 11 chr13 32437729 32437911 -87306987 + Charlie5 DNA MER1_type 2426 2619 0 219 200 27 13 chr13 32438663 32438738 -87306160 + (CTCA)n Simple_repeat Simple_repeat 4 79 0 237 289 0 62 chr13 32438742 32438839 -87306059 - L2 LINE L2 -2 3270 3180 7518 44 0 1 chr13 32438966 32439966 -87304932 - L1P LINE L1 -2789 3357 2359 3755 38 0 4 chr13 32439966 32440442 -87304456 + L1PA5 LINE L1 5385 5858 -296 687 179 0 14 chr13 32441254 32441394 -87303504 - MER104 DNA Tc2 -15 165 28 2182 163 12 15 chr13 32441475 32441879 -87303019 + MER57A LTR ERV1 1 403 0 355 268 52 57 chr13 32441983 32442177 -87302721 + L1MC5 LINE L1 7695 7887 -74 475 253 124 21 chr13 32442552 32442738 -87302160 - MIR SINE MIR 0 262 58 2396 105 0 0 chr13 32443204 32443510 -87301388 - AluSg SINE Alu -4 306 1 395 316 53 8 chr13 32443914 32444047 -87300851 + L3 LINE CR1 411 549 -1028 1241 319 85 12 chr13 32444093 32444598 -87300300 - L3 LINE CR1 -636 941 400 1526 194 11 0 chr13 32445143 32445450 -87299448 + AluJo SINE Alu 17 326 0 5238 43 5 0 chr13 32445578 32446211 -87298687 + L1PA8 LINE L1 5527 6162 -10 269 318 88 36 chr13 32446465 32446657 -87298241 - L3 LINE CR1 -1128 449 248 2086 119 14 0 chr13 32447227 32447513 -87297385 - AluSc SINE Alu -19 290 1 2263 107 10 0 chr13 32447528 32447836 -87297062 - AluSx SINE Alu -1 311 1 765 85 57 0 chr13 32451543 32451649 -87293249 - AluSg/x SINE Alu -2 307 196 1143 179 85 123 chr13 32451801 32452191 -87292707 + MER4C LTR ERV1 91 465 0 223 305 60 131 chr13 32452502 32452938 -87291960 + L2 LINE L2 2851 3255 -17 205 288 93 42 chr13 32453747 32453865 -87291033 + MIR SINE MIR 16 139 -69 2158 178 37 16 chr13 32454715 32455143 -87289755 + LTR23 LTR ERV1 1 437 0 204 156 0 188 chr13 32455424 32455488 -87289410 - L2 LINE L2 0 3272 3221 188 93 47 47 chr13 32455617 32455660 -87289238 + L3 LINE CR1 1060 1102 -475 22 35 0 0 chr13 32456881 32456910 -87287988 + AT_rich Low_complexity Low_complexity 1 29 0 2416 78 7 3 chr13 32457177 32457483 -87287415 - AluY SINE Alu -4 307 1 1852 161 0 3 chr13 32457485 32457776 -87287122 - AluJb SINE Alu -20 292 3 2643 170 27 29 chr13 32457882 32458406 -87286492 - L1MC2 LINE L1 -2 6342 5820 3330 165 185 31 chr13 32458409 32459722 -87285176 - pTR5 LTR ERV1 0 2438 747 1433 128 60 4 chr13 32459722 32459957 -87284941 - L1MC2 LINE L1 -518 5826 5579 788 250 72 119 chr13 32460174 32460749 -87284149 + MLT1H1 LTR MaLR 1 555 0 2369 74 0 10 chr13 32460870 32461169 -87283729 - AluY SINE Alu -15 296 1 33 0 0 0 chr13 32461171 32461204 -87283694 + AT_rich Low_complexity Low_complexity 1 33 0 269 293 114 32 chr13 32461754 32461877 -87283021 - L2 LINE L2 -4 3268 3136 1903 133 14 7 chr13 32462761 32463040 -87281858 - AluSx SINE Alu -19 293 13 585 311 10 5 chr13 32463106 32463299 -87281599 + Charlie8 DNA MER1_type 1 194 -2223 406 235 70 0 chr13 32463698 32463813 -87281085 + MER94 DNA DNA 12 134 0 648 343 85 50 chr13 32463813 32463977 -87280921 + L2 LINE L2 1779 1936 -1378 2118 125 0 10 chr13 32463977 32464280 -87280618 - AluSx SINE Alu -4 308 9 648 343 85 50 chr13 32464280 32464788 -87280110 + L2 LINE L2 1936 2474 -840 352 314 131 0 chr13 32465361 32465536 -87279362 + L2 LINE L2 2470 2667 -647 403 145 0 0 chr13 32466706 32466768 -87278130 - AluSg/x SINE Alu -85 227 166 610 180 22 43 chr13 32467490 32467629 -87277269 + LTR45 LTR ERV1 390 525 0 2332 90 6 10 chr13 32467717 32468028 -87276870 + AluSp SINE Alu 1 310 -3 1365 201 56 88 chr13 32468548 32469095 -87275803 + MER39 LTR ERV1 5 705 -2 234 209 0 0 chr13 32469618 32469661 -87275237 + LTR30 LTR ERV1 1 43 -679 1027 111 19 167 chr13 32469666 32469936 -87274962 + LTR12 LTR ERV1 49 278 -436 325 237 31 21 chr13 32469936 32470033 -87274865 + LTR30 LTR ERV1 546 643 -79 713 130 0 0 chr13 32470035 32470135 -87274763 + LTR12 LTR ERV1 615 714 0 648 193 0 62 chr13 32470472 32470617 -87274281 + MLT1E2 LTR MaLR 69 204 -420 1570 235 74 17 chr13 32470620 32471092 -87273806 + MER84 LTR ERVI 1 499 -8 1079 265 12 4 chr13 32471224 32471481 -87273417 + MLT1E2 LTR MaLR 368 626 0 1714 152 7 0 chr13 32471700 32471969 -87272929 + AluSq SINE Alu 9 279 -34 22 0 0 0 chr13 32472134 32472156 -87272742 + AT_rich Low_complexity Low_complexity 1 22 0 312 252 108 9 chr13 32472289 32472301 -87272597 - L1MA10 LINE L1 0 6334 6323 2572 228 41 35 chr13 32472301 32472982 -87271916 - L1ME1 LINE L1 -3 6163 5479 216 0 0 0 chr13 32473351 32473375 -87271523 + (A)n Simple_repeat Simple_repeat 1 24 0 3214 180 40 32 chr13 32473483 32474200 -87270698 - L1MB7 LINE L1 -5 6179 5457 2562 14 3 0 chr13 32474204 32474507 -87270391 - AluYa5 SINE Alu 0 304 1 456 51 0 0 chr13 32475436 32475495 -87269403 + (TA)n Simple_repeat Simple_repeat 2 60 0 222 150 0 0 chr13 32475594 32475634 -87269264 + (TA)n Simple_repeat Simple_repeat 2 41 0 232 156 0 0 chr13 32475642 32475687 -87269211 - L1MC4 LINE L1 -1339 6703 6659 24 0 0 0 chr13 32477370 32477394 -87267504 + AT_rich Low_complexity Low_complexity 1 24 0 193 244 0 0 chr13 32477557 32477598 -87267300 + L2 LINE L2 3261 3301 -12 933 133 0 15 chr13 32477774 32477951 -87266947 - FLAM_C SINE Alu 0 175 1 190 330 70 20 chr13 32478024 32478124 -87266774 - L2 LINE L2 0 3272 3168 310 147 29 0 chr13 32478175 32478243 -87266655 + (TA)n Simple_repeat Simple_repeat 1 70 0 209 319 147 56 chr13 32478289 32478521 -87266377 - L2 LINE L2 -216 3056 2804 339 214 262 16 chr13 32478879 32479005 -87265893 + MER5B DNA MER1_type 22 178 0 225 266 177 13 chr13 32479048 32479127 -87265771 - MIR SINE MIR -94 114 23 1225 193 15 50 chr13 32480100 32480359 -87264539 + MIR SINE MIR 13 262 0 2148 98 31 3 chr13 32480488 32480774 -87264124 + AluSx SINE Alu 1 294 -18 484 72 48 84 chr13 32480922 32481005 -87263893 + MADE1 DNA Mariner 1 80 0 545 325 11 26 chr13 32481967 32482158 -87262740 - MIR3 SINE MIR -11 197 10 233 29 29 0 chr13 32482257 32482291 -87262607 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1664 123 119 0 chr13 32482382 32482634 -87262264 + AluSx SINE Alu 1 282 -30 1993 114 0 0 chr13 32482707 32482969 -87261929 + AluSq SINE Alu 39 300 -13 2424 71 0 10 chr13 32483741 32484051 -87260847 - AluY SINE Alu -4 307 1 291 340 72 7 chr13 32484554 32484707 -87260191 - MIR SINE MIR 0 262 100 651 278 9 57 chr13 32484730 32484918 -87259980 - MIR SINE MIR -48 214 36 2180 93 0 54 chr13 32484918 32485231 -87259667 - AluSg1 SINE Alu -13 296 1 651 278 9 57 chr13 32485231 32485254 -87259644 - MIR SINE MIR -226 36 13 2096 126 3 16 chr13 32485953 32486270 -87258628 + AluSq SINE Alu 1 313 0 1998 116 3 39 chr13 32487028 32487338 -87257560 - AluSx SINE Alu -9 303 5 1795 99 12 24 chr13 32488061 32488314 -87256584 + AluSq SINE Alu 1 250 -63 1189 54 7 7 chr13 32488314 32488462 -87256436 + MER4B LTR ERV1 463 610 0 396 268 19 79 chr13 32488656 32488973 -87255925 - HAL1 LINE L1 -1333 1174 877 330 239 112 9 chr13 32489099 32489312 -87255586 + L1ME LINE L1 5568 5854 -267 1026 195 41 1 chr13 32489757 32490079 -87254819 - MER93b LTR ERV1 0 373 6 1977 150 0 10 chr13 32490139 32490439 -87254459 - AluSx SINE Alu -15 297 1 1682 146 58 85 chr13 32490882 32491260 -87253638 + L1MB1 LINE L1 5693 6060 -108 251 325 0 17 chr13 32491750 32491870 -87253028 + (TA)n Simple_repeat Simple_repeat 1 118 0 207 184 41 0 chr13 32491977 32492026 -87252872 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 854 233 115 84 chr13 32492559 32492911 -87251987 - LTR48B LTR ERV1 0 595 215 1813 97 0 12 chr13 32492911 32493158 -87251740 - AluSx SINE Alu -15 297 54 854 233 115 84 chr13 32493158 32493335 -87251563 - LTR48B LTR ERV1 -380 215 45 623 138 21 0 chr13 32493335 32493429 -87251469 + MER2 DNA MER2_type 2 97 -248 1512 198 0 30 chr13 32493429 32493727 -87251171 + AluJo SINE Alu 1 289 -23 182 91 30 0 chr13 32493731 32493764 -87251134 + (TA)n Simple_repeat Simple_repeat 2 35 0 219 36 0 0 chr13 32493764 32493792 -87251106 + (CA)n Simple_repeat Simple_repeat 2 29 0 225 162 0 0 chr13 32493793 32493830 -87251068 - MER2 DNA MER2_type -226 119 83 185 154 26 0 chr13 32493836 32493875 -87251023 + (TA)n Simple_repeat Simple_repeat 1 40 0 357 24 0 0 chr13 32493876 32493918 -87250980 + (TG)n Simple_repeat Simple_repeat 2 43 0 1302 222 134 82 chr13 32493929 32494643 -87250255 + LTR1B LTR ERV1 41 983 -37 451 175 0 12 chr13 32494699 32494779 -87250119 + MER4A LTR ERV1 20 98 -566 1776 136 47 23 chr13 32494779 32495116 -87249782 + MER4A LTR ERV1 261 664 0 720 241 88 32 chr13 32495143 32495392 -87249506 + MER2 DNA MER2_type 83 345 0 492 171 0 23 chr13 32495393 32495487 -87249411 - MER34C LTR ERV1 -503 82 4 316 145 0 79 chr13 32495498 32495574 -87249324 - L1ME4a LINE L1 -54 6067 5998 457 280 66 19 chr13 32495675 32495932 -87248966 - L1ME4a LINE L1 -281 5840 5572 933 125 0 0 chr13 32495932 32496091 -87248807 - AluY SINE Alu 0 316 158 259 236 0 42 chr13 32496228 32496300 -87248598 + MLT1C LTR MaLR 399 467 0 2379 96 0 0 chr13 32496580 32496873 -87248025 + AluSg SINE Alu 1 293 -17 1781 247 95 11 chr13 32498598 32499125 -87245773 + MLT1G LTR MaLR 9 579 -11 736 296 40 12 chr13 32499292 32499539 -87245359 - MIR SINE MIR -7 255 2 1877 151 0 50 chr13 32500206 32500525 -87244373 + MER1B DNA MER1_type 37 339 0 1600 139 70 55 chr13 32500538 32500883 -87244015 + LOR1b LTR ERV1 32 381 -80 210 37 0 0 chr13 32502087 32502114 -87242784 + (TG)n Simple_repeat Simple_repeat 2 28 0 344 296 0 113 chr13 32502771 32502818 -87242080 - MIR SINE MIR -102 160 109 217 0 0 0 chr13 32502818 32502842 -87242056 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 2306 75 0 0 chr13 32502842 32503122 -87241776 - AluSc SINE Alu -29 280 1 344 296 0 113 chr13 32503122 32503232 -87241666 - MIR SINE MIR -151 111 20 206 330 91 0 chr13 32504715 32504803 -87240095 + L2 LINE L2 3134 3229 -43 295 307 88 7 chr13 32505491 32505628 -87239270 - MIR SINE MIR -51 211 64 738 91 20 0 chr13 32505950 32506049 -87238849 - AluSg/x SINE Alu -13 299 199 1205 167 99 111 chr13 32506062 32506386 -87238512 + MLT1B LTR MaLR 1 323 -67 2075 113 3 7 chr13 32506386 32506720 -87238178 - AluSx SINE Alu 0 333 1 1205 167 99 111 chr13 32506720 32506788 -87238110 + MLT1B LTR MaLR 323 390 0 187 149 21 21 chr13 32508041 32508088 -87236810 + (TATATG)n Simple_repeat Simple_repeat 1 47 0 231 103 0 0 chr13 32508132 32508171 -87236727 + (TA)n Simple_repeat Simple_repeat 1 39 0 326 338 70 25 chr13 32508937 32509094 -87235804 - L3b LINE CR1 -8 1575 1412 241 288 261 0 chr13 32509209 32509320 -87235578 + MIR3 SINE MIR 18 157 -51 353 268 89 32 chr13 32509324 32509447 -87235451 + MER5A DNA MER1_type 1 130 -59 * 364 296 9 26 chr13 32509351 32509466 -87235432 - MER5A DNA MER1_type -26 163 51 312 244 90 0 chr13 32511571 32511649 -87233249 + MIR SINE MIR 62 146 -116 1479 176 85 48 chr13 32511705 32512057 -87232841 + MLT1A1 LTR MaLR 1 365 0 457 306 49 61 chr13 32512133 32512460 -87232438 + Charlie7 DNA MER1_type 1 323 -2289 2193 170 62 22 chr13 32512500 32512964 -87231934 + MLT1D LTR MaLR 23 505 0 558 230 36 0 chr13 32512968 32513107 -87231791 + Charlie7 DNA MER1_type 328 471 -2141 34 24 0 0 chr13 32513215 32513256 -87231642 + AT_rich Low_complexity Low_complexity 1 41 0 1978 200 66 22 chr13 32513279 32513503 -87231395 - L1MD2 LINE L1 -1 6358 6145 1709 137 53 66 chr13 32513503 32513883 -87231015 - THE1C LTR MaLR 0 375 1 1978 200 66 22 chr13 32513883 32514157 -87230741 - L1MD2 LINE L1 -214 6145 5838 1381 266 42 54 chr13 32514159 32514663 -87230235 - MLT1E2 LTR MaLR -2 624 127 1483 176 0 46 chr13 32514746 32515075 -87229823 - L1MD2 LINE L1 -517 5842 5529 * 9808 183 32 21 chr13 32515063 32515218 -87229680 - L1 LINE L1 -1670 5895 5743 2326 74 7 7 chr13 32515218 32515515 -87229383 - AluY SINE Alu -14 297 1 9808 183 32 21 chr13 32515515 32517940 -87226958 - L1 LINE L1 -1822 5743 3280 197 291 18 0 chr13 32517940 32517995 -87226903 - MIR3 SINE MIR -42 166 111 2212 138 0 0 chr13 32518904 32519216 -87225682 + AluSx SINE Alu 1 312 0 245 268 28 14 chr13 32519218 32519289 -87225609 - MER5B DNA MER1_type -100 78 7 788 128 0 64 chr13 32519394 32519582 -87225316 + (GAA)n Simple_repeat Simple_repeat 1 176 0 200 324 171 0 chr13 32519892 32519997 -87224901 - L2 LINE L2 0 3272 3150 237 163 0 0 chr13 32520087 32520130 -87224768 - MLT1K LTR MaLR 0 588 546 2231 128 14 3 chr13 32522539 32522897 -87222001 + MER4B LTR ERV1 227 588 -22 1043 99 324 0 chr13 32522897 32523110 -87221788 + LTR12 LTR ERV1 1 282 -432 282 240 0 0 chr13 32523111 32523186 -87221712 + LTR30 LTR ERV1 550 624 -98 1126 95 57 0 chr13 32523186 32523378 -87221520 + LTR12 LTR ERV1 49 660 -54 2471 84 0 0 chr13 32523378 32523686 -87221212 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 32524691 32524712 -87220186 + AT_rich Low_complexity Low_complexity 1 21 0 520 209 276 36 chr13 32525176 32525401 -87219497 + MER39 LTR ERV1 4 282 -425 * 1315 196 95 20 chr13 32525378 32525749 -87219149 + MER39 LTR ERV1 175 707 0 187 280 20 0 chr13 32525750 32525800 -87219098 - MIR SINE MIR -73 135 85 188 61 61 0 chr13 32526728 32526761 -87218137 + T-rich Low_complexity Low_complexity 2 36 0 280 237 145 89 chr13 32527671 32527975 -87216923 + L2 LINE L2 2317 2637 -677 26 0 0 0 chr13 32528014 32528040 -87216858 + AT_rich Low_complexity Low_complexity 1 26 0 315 267 111 39 chr13 32528156 32528336 -87216562 - MIR SINE MIR -13 249 57 227 181 15 98 chr13 32528362 32528495 -87216403 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 213 252 18 18 chr13 32528548 32528659 -87216239 + (TATAA)n Simple_repeat Simple_repeat 5 115 0 208 372 0 0 chr13 32528998 32529084 -87215814 + MIR SINE MIR 162 247 -15 633 266 131 18 chr13 32529092 32529321 -87215577 + MIR SINE MIR 2 256 -6 269 366 66 22 chr13 32529483 32529666 -87215232 - MIR3 SINE MIR -9 199 9 234 431 36 6 chr13 32530169 32530336 -87214562 - L2 LINE L2 -2 3270 3099 332 276 265 0 chr13 32530367 32530552 -87214346 - MIR SINE MIR -3 259 26 210 341 62 31 chr13 32530612 32530741 -87214157 - L2 LINE L2 -186 3086 2954 714 270 75 107 chr13 32530906 32531280 -87213618 + L2 LINE L2 2910 3271 -1 2148 128 0 3 chr13 32531747 32532060 -87212838 + AluSx SINE Alu 1 312 0 316 304 175 21 chr13 32532563 32532757 -87212141 - MIR SINE MIR -20 242 19 245 312 174 7 chr13 32532996 32533134 -87211764 + MIR SINE MIR 96 256 -6 199 111 0 0 chr13 32533530 32533557 -87211341 - L2 LINE L2 -14 3258 3232 2271 90 3 0 chr13 32533604 32533914 -87210984 - AluSp SINE Alu -2 311 1 22 0 0 0 chr13 32533915 32533937 -87210961 + AT_rich Low_complexity Low_complexity 1 22 0 2105 203 60 6 chr13 32534702 32535181 -87209717 + MLT1D LTR MaLR 1 505 0 513 299 57 6 chr13 32535217 32535374 -87209524 + MIR3 SINE MIR 30 194 -14 197 83 28 0 chr13 32535599 32535635 -87209263 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 342 269 0 55 chr13 32537061 32537206 -87207692 - LTR67 LTR ERVL -7 550 414 2584 129 194 21 chr13 32537530 32538055 -87206843 - MER51A LTR ERV1 -18 616 1 302 338 22 35 chr13 32538559 32538790 -87206108 - ERVL LTR ERVL -186 5299 5072 286 315 159 26 chr13 32538941 32539281 -87205617 - ERVL LTR ERVL -764 4890 4506 341 281 21 10 chr13 32539294 32539390 -87205508 - ERVL LTR ERVL -3497 2267 2171 215 265 0 0 chr13 32539397 32539446 -87205452 + (TA)n Simple_repeat Simple_repeat 2 50 0 525 319 113 34 chr13 32539502 32540177 -87204721 - ERVL LTR ERVL -3675 2089 1362 2367 82 3 16 chr13 32540288 32540593 -87204305 - AluSp SINE Alu -12 301 1 200 216 20 0 chr13 32540740 32540791 -87204107 + (ATTG)n Simple_repeat Simple_repeat 3 54 0 313 0 0 0 chr13 32541536 32541573 -87203325 + MSTB LTR MaLR 18 54 -372 199 259 35 0 chr13 32541618 32541676 -87203222 + L2 LINE L2 2715 2774 -540 2172 181 19 14 chr13 32542026 32542446 -87202452 + MSTB LTR MaLR 1 422 -4 203 250 33 11 chr13 32543660 32543752 -87201146 + (TA)n Simple_repeat Simple_repeat 2 95 0 2182 105 0 53 chr13 32544696 32545019 -87199879 - AluSq SINE Alu -7 306 1 871 162 40 0 chr13 32545301 32545449 -87199449 + FRAM SINE Alu 1 153 -23 265 381 35 10 chr13 32545791 32545993 -87198905 + L3 LINE CR1 1113 1319 -258 1877 169 20 31 chr13 32546142 32546532 -87198366 - MLT1B LTR MaLR -4 386 1 246 316 53 13 chr13 32548284 32548360 -87196538 + L2 LINE L2 3231 3309 -4 2154 119 3 0 chr13 32549581 32549909 -87194989 - L1PA13 LINE L1 -5 6158 5830 3265 137 24 0 chr13 32549909 32550742 -87194156 + L1P4 LINE L1 4949 5795 -368 336 115 103 13 chr13 32550814 32550892 -87194006 - MER95 LTR ERV -4 427 343 403 208 21 10 chr13 32550992 32551088 -87193810 - MER95 LTR ERV -313 118 22 1519 291 149 29 chr13 32553833 32554265 -87190633 - Charlie8 DNA MER1_type -426 1991 1612 2068 167 44 39 chr13 32554265 32554696 -87190202 + Tigger2a DNA MER2_type 1 433 -1 1519 291 149 29 chr13 32554696 32555730 -87189168 - Charlie8 DNA MER1_type -805 1612 339 464 216 141 124 chr13 32556003 32556068 -87188830 + L2 LINE L2 2669 2731 -583 1896 148 23 3 chr13 32556068 32556372 -87188526 - AluSx SINE Alu -2 310 1 464 216 141 124 chr13 32556372 32556449 -87188449 + L2 LINE L2 2731 2805 -509 782 170 149 48 chr13 32556449 32556637 -87188261 - MER63A DNA MER1_type 0 210 4 464 216 141 124 chr13 32556637 32556784 -87188114 + L2 LINE L2 2805 2964 -350 255 125 0 0 chr13 32556875 32556915 -87187983 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 387 258 52 45 chr13 32556915 32557070 -87187828 + L2 LINE L2 3158 3313 0 815 297 139 43 chr13 32557740 32558393 -87186505 - L2 LINE L2 -907 2407 1692 267 222 0 16 chr13 32558448 32558511 -87186387 + L1ME LINE L1 45 106 -5964 * 12473 153 38 5 chr13 32558508 32558769 -87186129 + L1M1 LINE L1 12 263 -7302 2102 118 7 7 chr13 32558769 32559073 -87185825 + AluSx SINE Alu 1 304 -8 12473 153 38 5 chr13 32559073 32561552 -87183346 + L1M1 LINE L1 263 3538 -4027 685 295 53 18 chr13 32561564 32561849 -87183049 + L1ME LINE L1 110 404 -5666 381 267 78 0 chr13 32562268 32562384 -87182514 + MIR SINE MIR 121 245 -17 845 331 3 48 chr13 32563961 32564001 -87180897 + L1MA4 LINE L1 2 42 -5913 2103 131 7 0 chr13 32564001 32564299 -87180599 + AluSx SINE Alu 1 300 -12 845 331 3 48 chr13 32564299 32564614 -87180284 + L1MA4 LINE L1 42 341 -5614 14117 188 60 10 chr13 32565808 32566067 -87178831 + L1MA4 LINE L1 335 580 -5608 1586 215 3 3 chr13 32566067 32566360 -87178538 + AluJo SINE Alu 1 293 -19 14117 188 60 10 chr13 32566360 32571653 -87173245 + L1MA4 LINE L1 580 6181 -7 261 0 0 0 chr13 32572221 32572250 -87172648 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 928 153 64 15 chr13 32572836 32573039 -87171859 + L1M4 LINE L1 5000 5212 -934 268 336 27 7 chr13 32573700 32573846 -87171052 + L1MEc LINE L1 241 389 -6007 881 228 60 29 chr13 32573873 32574028 -87170870 - Tigger7 DNA MER2_type -265 74 79 1609 181 13 29 chr13 32574028 32574337 -87170561 - AluJo SINE Alu -8 304 1 881 228 60 29 chr13 32574337 32574396 -87170502 - Tigger7 DNA MER2_type -259 80 24 247 358 30 20 chr13 32574406 32574607 -87170291 + L1MEc LINE L1 498 700 -5696 1036 164 142 0 chr13 32574618 32574844 -87170054 - Tigger2 DNA MER2_type 0 2718 2461 248 128 0 64 chr13 32574880 32574927 -87169971 - Tigger2 DNA MER2_type -1974 744 701 748 137 65 0 chr13 32574927 32575048 -87169850 - Tigger2 DNA MER2_type -2246 472 344 1827 143 67 40 chr13 32575048 32575376 -87169522 - MER1B DNA MER1_type -2 337 1 1492 166 71 12 chr13 32575376 32575699 -87169199 - Tigger2 DNA MER2_type -2376 342 1 490 246 159 31 chr13 32575807 32576322 -87168576 + L1MEc LINE L1 802 1420 -4795 491 238 54 12 chr13 32576473 32576641 -87168257 + L1MEc LINE L1 1608 1782 -4614 688 249 61 30 chr13 32577357 32577654 -87167244 + L1ME2 LINE L1 631 936 -5348 649 259 142 12 chr13 32577667 32577991 -87166907 + L1ME2 LINE L1 1367 1833 -4549 619 187 53 120 chr13 32577998 32578281 -87166617 + L1ME2 LINE L1 2532 2795 -3587 819 216 58 32 chr13 32578319 32578661 -87166237 + L1ME2 LINE L1 3063 3413 -2969 1810 206 126 22 chr13 32578666 32579247 -87165651 + L1ME2 LINE L1 5748 6388 -12 348 296 6 51 chr13 32580467 32580643 -87164255 + L1MC4a LINE L1 5668 5816 -305 265 286 158 5 chr13 32580808 32581011 -87163887 + L2 LINE L2 3077 3310 -3 432 55 0 0 chr13 32582006 32582061 -87162837 + (TA)n Simple_repeat Simple_repeat 2 56 0 235 244 126 76 chr13 32582277 32582396 -87162502 - MIR SINE MIR -118 144 20 213 298 164 10 chr13 32582482 32582586 -87162312 - MIR SINE MIR -122 140 21 246 331 86 63 chr13 32582866 32583041 -87161857 + MIR SINE MIR 13 191 -71 25 0 0 0 chr13 32584321 32584346 -87160552 + AT_rich Low_complexity Low_complexity 1 25 0 2081 109 3 10 chr13 32584764 32585058 -87159840 + AluSx SINE Alu 1 292 -20 2326 93 0 7 chr13 32585060 32585370 -87159528 + AluY SINE Alu 1 308 -3 2181 99 0 0 chr13 32586729 32587021 -87157877 + AluY SINE Alu 1 292 -19 287 280 59 17 chr13 32587947 32588065 -87156833 - L1ME4a LINE L1 -36 6085 5963 953 178 0 41 chr13 32588402 32588571 -87156327 + AluJb SINE Alu 134 295 -17 369 324 47 47 chr13 32588571 32588824 -87156074 - L1ME4a LINE L1 -535 5586 5347 2533 51 0 0 chr13 32589378 32589674 -87155224 - AluY SINE Alu -15 296 1 21 57 0 0 chr13 32589716 32589751 -87155147 + AT_rich Low_complexity Low_complexity 1 35 0 1962 104 82 25 chr13 32589835 32590190 -87154708 + THE1C LTR MaLR 1 375 0 707 190 38 22 chr13 32590549 32590733 -87154165 - MER53 DNA DNA -2 187 1 1704 181 3 13 chr13 32590771 32591069 -87153829 + AluJo SINE Alu 1 295 -17 198 0 0 0 chr13 32591976 32591998 -87152900 + (CAAG)n Simple_repeat Simple_repeat 1 22 0 3953 173 55 21 chr13 32591999 32592142 -87152756 - MER21B LTR ERV1 -114 749 612 2362 87 7 16 chr13 32592142 32592452 -87152446 + AluSx SINE Alu 1 307 -5 3953 173 55 21 chr13 32592452 32593032 -87151866 - MER21B LTR ERV1 -251 612 1 180 349 35 23 chr13 32593135 32593221 -87151677 + MIR SINE MIR 94 180 -82 3033 132 20 4 chr13 32593278 32593772 -87151126 + L1MB3 LINE L1 5681 6182 -1 473 292 9 0 chr13 32594224 32594337 -87150561 + L2 LINE L2 3155 3268 -4 2381 77 7 3 chr13 32594369 32594679 -87150219 - AluY SINE Alu 0 311 1 249 271 0 29 chr13 32595320 32595390 -87149508 + CT-rich Low_complexity Low_complexity 4 71 0 396 255 102 51 chr13 32595390 32595645 -87149253 - L2 LINE L2 -1 3312 3045 310 325 56 25 chr13 32595917 32596077 -87148821 - L2 LINE L2 -4 3309 3145 2366 146 63 5 chr13 32597031 32597178 -87147720 - L1MB7 LINE L1 -20 6164 6018 4245 217 39 10 chr13 32597178 32598741 -87146157 - L1MC4 LINE L1 -743 5403 4390 393 260 29 0 chr13 32598852 32598956 -87145942 - MIR SINE MIR -65 197 91 933 232 65 90 chr13 32599516 32600012 -87144886 - MLT1H1 LTR MaLR -1 554 19 207 265 0 0 chr13 32600034 32600083 -87144815 - L2 LINE L2 -38 3234 3186 499 264 16 0 chr13 32600138 32600263 -87144635 + MER94 DNA DNA 8 134 0 1555 186 16 70 chr13 32600617 32601003 -87143895 - MLT1A1 LTR MaLR 0 365 1 2588 39 0 0 chr13 32601177 32601484 -87143414 + AluYa5 SINE Alu 1 307 -4 1438 126 5 5 chr13 32602378 32602585 -87142313 - AluSq SINE Alu -106 207 1 196 274 145 48 chr13 32604996 32605120 -87139778 + MIR SINE MIR 124 259 -3 192 214 71 0 chr13 32605277 32605319 -87139579 - L3 LINE CR1 -3 1574 1530 209 339 220 0 chr13 32605328 32605446 -87139452 - L2 LINE L2 -20 3252 3109 23 0 0 0 chr13 32605998 32606021 -87138877 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 32606093 32606114 -87138784 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 32607042 32607064 -87137834 + AT_rich Low_complexity Low_complexity 1 22 0 188 282 64 103 chr13 32607200 32607356 -87137542 - MIR SINE MIR -74 188 39 22 0 0 0 chr13 32607482 32607504 -87137394 + AT_rich Low_complexity Low_complexity 1 22 0 1764 139 90 13 chr13 32607901 32608211 -87136687 + MER1B DNA MER1_type 1 334 -3 644 150 35 9 chr13 32609450 32609563 -87135335 + U5 snRNA snRNA 1 116 0 1541 151 34 45 chr13 32610263 32610555 -87134343 + AluJo SINE Alu 1 289 -23 422 207 0 0 chr13 32610708 32610790 -87134108 + AluJ/FLAM SINE Alu 6 87 -225 993 165 6 0 chr13 32610927 32611085 -87133813 - FRAM SINE Alu -5 171 13 24 32 0 0 chr13 32611549 32611580 -87133318 + AT_rich Low_complexity Low_complexity 1 31 0 868 229 0 0 chr13 32611791 32611957 -87132941 - FRAM SINE Alu -10 166 1 552 327 62 2 chr13 32611963 32612412 -87132486 + L1ME LINE L1 3829 4304 -1842 589 249 30 28 chr13 32612623 32612843 -87132055 + L1ME LINE L1 5437 5651 -470 363 229 57 41 chr13 32614242 32614364 -87130534 + MIR SINE MIR 106 229 -33 22 0 0 0 chr13 32615557 32615579 -87129319 + AT_rich Low_complexity Low_complexity 1 22 0 228 281 175 72 chr13 32615586 32616158 -87128740 - L1MC/D LINE L1 -1905 5903 5273 277 312 109 28 chr13 32616363 32616835 -87128063 - L1MC/D LINE L1 -1134 5012 4501 225 329 53 0 chr13 32617523 32617599 -87127299 + MIR SINE MIR 36 115 -93 189 0 0 0 chr13 32618165 32618186 -87126712 + (TA)n Simple_repeat Simple_repeat 1 21 0 210 255 38 104 chr13 32618283 32618389 -87126509 - MER5A DNA MER1_type -7 182 84 821 273 97 76 chr13 32618398 32618874 -87126024 - LTR16C LTR ERVL -2 489 4 2543 52 0 3 chr13 32619897 32620205 -87124693 + AluSq SINE Alu 1 307 -6 703 277 113 18 chr13 32620325 32620725 -87124173 + L2 LINE L2 2701 3143 -170 230 54 0 27 chr13 32621244 32621281 -87123617 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 209 328 17 0 chr13 32621281 32621339 -87123559 - L2 LINE L2 -13 3259 3201 676 271 24 19 chr13 32621954 32622161 -87122737 + L2 LINE L2 2898 3105 -208 344 327 56 23 chr13 32622171 32622385 -87122513 - L2 LINE L2 -2545 769 549 233 67 0 0 chr13 32622480 32622510 -87122388 + MER53 DNA DNA 29 58 -131 1380 128 0 5 chr13 32622559 32622762 -87122136 - AluSx SINE Alu -109 203 2 1270 201 97 3 chr13 32622764 32623072 -87121826 - L1M4 LINE L1 -553 5621 5285 1195 264 106 33 chr13 32623075 32623650 -87121248 - L1M4 LINE L1 -893 5253 4637 1208 250 125 35 chr13 32623802 32624377 -87120521 - L1M4 LINE L1 -893 5253 4627 1044 259 68 67 chr13 32624894 32625158 -87119740 + HAL1 LINE L1 1793 2055 -452 1079 214 110 31 chr13 32625158 32625475 -87119423 + MER2 DNA MER2_type 2 343 -1 1044 259 68 67 chr13 32625475 32625576 -87119322 + HAL1 LINE L1 2055 2154 -353 1749 115 76 49 chr13 32625576 32625864 -87119034 + AluSg SINE Alu 1 296 -14 1044 259 68 67 chr13 32625864 32626068 -87118830 + HAL1 LINE L1 2154 2364 -143 2293 81 3 0 chr13 32626127 32626444 -87118454 + AluSx SINE Alu 1 318 0 192 333 74 43 chr13 32626678 32626936 -87117962 - L2 LINE L2 -187 3085 2820 342 299 35 40 chr13 32627118 32627292 -87117606 + MIR3 SINE MIR 36 208 0 2221 118 3 7 chr13 32628337 32628642 -87116256 - AluSx SINE Alu -7 305 2 230 305 55 55 chr13 32629722 32629850 -87115048 - L2 LINE L2 -222 3050 2923 186 237 0 0 chr13 32630017 32630055 -87114843 + L2 LINE L2 3227 3264 -8 246 298 81 24 chr13 32630112 32630236 -87114662 - MIR SINE MIR -130 132 2 420 220 198 34 chr13 32630278 32630455 -87114443 - MIR SINE MIR -44 218 13 319 380 7 7 chr13 32630817 32630954 -87113944 - MER5B DNA MER1_type -41 137 1 220 146 24 0 chr13 32631076 32631117 -87113781 + (TAA)n Simple_repeat Simple_repeat 2 43 0 379 255 21 0 chr13 32631531 32631625 -87113273 - MIR SINE MIR -72 190 95 2043 135 6 6 chr13 32633863 32634175 -87110723 + AluSq SINE Alu 1 312 -1 260 322 22 61 chr13 32634177 32634357 -87110541 - MLT1J1 LTR MaLR -33 413 241 793 236 45 68 chr13 32634366 32634864 -87110034 + MER39 LTR ERV1 5 787 0 584 274 85 40 chr13 32634864 32635087 -87109811 - MLT1J2 LTR MaLR -217 233 1 2041 125 0 0 chr13 32635201 32635520 -87109378 - AluSx SINE Alu 0 323 5 385 309 66 22 chr13 32635843 32635979 -87108919 - MIR SINE MIR -120 142 1 221 253 110 117 chr13 32637077 32637231 -87107667 - L2 LINE L2 -26 3246 3094 435 207 333 0 chr13 32637301 32637436 -87107462 + MER5A DNA MER1_type 9 188 -1 487 205 134 9 chr13 32638565 32638677 -87106221 - FLAM_A SINE Alu -7 126 1 1484 195 34 84 chr13 32639136 32639612 -87105286 - MLT1C LTR MaLR -15 452 1 1681 207 0 0 chr13 32640353 32640672 -87104226 + AluJb SINE Alu 2 320 0 2177 123 0 3 chr13 32640696 32641005 -87103893 + AluSp SINE Alu 1 308 -5 21 36 0 0 chr13 32641061 32641089 -87103809 + AT_rich Low_complexity Low_complexity 1 28 0 503 284 89 48 chr13 32641099 32641391 -87103507 - L2 LINE L2 -4 3309 3006 213 47 70 0 chr13 32642106 32642149 -87102749 + (TTG)n Simple_repeat Simple_repeat 3 48 0 2131 90 4 7 chr13 32642149 32642427 -87102471 - AluSx SINE Alu -35 277 1 2409 226 108 40 chr13 32642454 32643389 -87101509 - L1ME2 LINE L1 -6 6158 5163 1174 261 88 15 chr13 32643580 32643909 -87100989 - MLT1E3 LTR MaLR -2 622 270 1427 186 82 48 chr13 32644546 32644923 -87099975 - MLT1B LTR MaLR 0 390 1 322 231 19 58 chr13 32644967 32645071 -87099827 + MLT1C LTR MaLR 2 101 -366 1622 133 61 33 chr13 32645177 32645380 -87099518 - L1MB1 LINE L1 0 6168 5951 2325 163 42 7 chr13 32645380 32645790 -87099108 - MSTB LTR MaLR 0 426 3 1622 133 61 33 chr13 32645790 32645916 -87098982 - L1MB1 LINE L1 -217 5951 5830 956 214 6 0 chr13 32645924 32646106 -87098792 + MLT2B1 LTR ERVL 21 203 -317 3941 245 93 16 chr13 32646109 32648411 -87096487 - L1 LINE L1 -3201 3181 802 21 0 0 0 chr13 32648548 32648569 -87096329 + AT_rich Low_complexity Low_complexity 1 21 0 4817 100 33 12 chr13 32648569 32649298 -87095600 - L1PB2 LINE L1 -2 6149 5406 270 295 179 27 chr13 32650704 32650816 -87094082 + L2 LINE L2 3143 3271 -1 506 222 131 17 chr13 32651349 32651525 -87093373 - L1MB8 LINE L1 0 6178 5983 711 153 30 0 chr13 32651531 32651662 -87093236 + MER53 DNA DNA 55 189 0 2310 94 10 0 chr13 32652352 32652661 -87092237 - AluSx SINE Alu 0 312 1 205 296 19 0 chr13 32652859 32652913 -87091985 - L2 LINE L2 -67 3205 3151 1172 208 32 7 chr13 32653274 32653558 -87091340 - L1ME2 LINE L1 -1287 4859 4569 377 20 20 0 chr13 32653634 32653684 -87091214 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr13 32654208 32654229 -87090669 + AT_rich Low_complexity Low_complexity 1 21 0 3127 173 49 2 chr13 32654282 32654872 -87090026 + L1MB2 LINE L1 5538 6155 -16 1651 158 40 4 chr13 32655757 32656029 -87088869 + AluSx SINE Alu 1 322 0 274 75 0 0 chr13 32656029 32656069 -87088829 + (TAAA)n Simple_repeat Simple_repeat 2 176 0 2446 136 32 17 chr13 32656584 32656989 -87087909 + LTR57 LTR ERVL 1 411 0 376 296 24 53 chr13 32657537 32657706 -87087192 - L2 LINE L2 -931 2383 2220 242 325 69 96 chr13 32657770 32657831 -87087067 - L2 LINE L2 -2777 537 476 2122 134 0 7 chr13 32657831 32658137 -87086761 + AluSx SINE Alu 1 304 -8 242 325 69 96 chr13 32658137 32658318 -87086580 - L2 LINE L2 -2838 476 304 2226 174 62 2 chr13 32658318 32658720 -87086178 + MSTB LTR MaLR 1 426 0 242 325 69 96 chr13 32658720 32658811 -87086087 - L2 LINE L2 -3010 304 212 258 282 71 12 chr13 32659244 32659329 -87085569 - L2 LINE L2 -15 3298 3209 1822 172 53 3 chr13 32659611 32659930 -87084968 - MER7A DNA MER2_type -13 333 1 781 216 33 19 chr13 32659930 32660179 -87084719 - L1MA9 LINE L1 -33 6266 5997 2117 177 60 24 chr13 32660186 32660637 -87084261 - MLT1C LTR MaLR 0 467 1 373 289 83 62 chr13 32663643 32663979 -87080919 + L1ME LINE L1 4477 4819 -1327 249 284 110 55 chr13 32663981 32664090 -87080808 + L2 LINE L2 3198 3312 -1 490 196 209 13 chr13 32664679 32664837 -87080061 + MER5A DNA MER1_type 1 189 0 2095 168 43 33 chr13 32665454 32666000 -87078898 + MLT2A2 LTR ERVL 1 554 0 318 329 43 0 chr13 32666163 32666324 -87078574 + L1ME LINE L1 5569 5736 -385 696 266 84 21 chr13 32667796 32668033 -87076865 + MIR SINE MIR 11 262 0 1431 220 36 51 chr13 32668261 32668729 -87076169 + MER65B LTR ERV1 1 461 -70 23 78 0 0 chr13 32668905 32668956 -87075942 + AT_rich Low_complexity Low_complexity 1 51 0 241 378 20 26 chr13 32669378 32669529 -87075369 + GA-rich Low_complexity Low_complexity 1 150 0 2279 30 0 0 chr13 32669534 32669803 -87075095 - L1PA3 LINE L1 -142 6013 5745 320 130 78 26 chr13 32669803 32669880 -87075018 + MER65B LTR ERV1 440 520 -11 183 80 0 0 chr13 32670048 32670073 -87074825 + (TG)n Simple_repeat Simple_repeat 2 26 0 227 125 50 0 chr13 32670087 32670127 -87074771 + L1MA9 LINE L1 6196 6237 -75 219 116 0 47 chr13 32670128 32670171 -87074727 + (TA)n Simple_repeat Simple_repeat 1 41 0 526 134 42 33 chr13 32670177 32670425 -87074473 + (TATG)n Simple_repeat Simple_repeat 1 250 0 535 122 39 39 chr13 32670431 32670611 -87074287 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 264 174 0 76 chr13 32670611 32670703 -87074195 + (TA)n Simple_repeat Simple_repeat 1 85 0 358 172 115 0 chr13 32670704 32670791 -87074107 - L1MA9 LINE L1 -40 6272 6176 1114 158 48 31 chr13 32670791 32671019 -87073879 - L1MA9 LINE L1 -101 6211 5980 314 203 20 27 chr13 32671019 32671167 -87073731 + (TA)n Simple_repeat Simple_repeat 2 148 0 995 252 9 0 chr13 32671200 32671410 -87073488 - MER58A DNA MER1_type -9 215 4 655 267 85 21 chr13 32672798 32673043 -87071855 - MIR SINE MIR -13 249 3 661 193 62 0 chr13 32673424 32673569 -87071329 + L1MB7 LINE L1 6031 6184 0 436 322 87 51 chr13 32674316 32674651 -87070247 + L2 LINE L2 2925 3271 -1 371 324 35 17 chr13 32675625 32675798 -87069100 - MIR SINE MIR -51 211 36 438 285 62 8 chr13 32675960 32676090 -87068808 + MIR3 SINE MIR 3 139 -69 358 234 11 43 chr13 32677300 32677484 -87067414 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1937 143 3 3 chr13 32678040 32678326 -87066572 + AluSx SINE Alu 1 286 -26 22 56 0 0 chr13 32678326 32678362 -87066536 + AT_rich Low_complexity Low_complexity 1 36 0 457 282 49 45 chr13 32679448 32679693 -87065205 - L1ME LINE L1 -368 5753 5508 653 274 30 79 chr13 32680381 32680647 -87064251 - MIR SINE MIR 0 262 10 251 324 140 59 chr13 32681012 32681875 -87063023 + L2 LINE L2 2296 3221 -51 556 79 13 0 chr13 32682063 32682139 -87062759 + MADE1 DNA Mariner 1 77 -3 2697 151 15 30 chr13 32682221 32682684 -87062214 + MSTB2 LTR MaLR 1 456 -1 350 204 10 61 chr13 32682887 32682985 -87061913 + MIR3 SINE MIR 64 156 -52 348 313 36 62 chr13 32683169 32683188 -87061710 + L2 LINE L2 2892 2910 -362 2370 110 126 3 chr13 32683188 32683569 -87061329 + MSTA LTR MaLR 1 428 0 348 313 36 62 chr13 32683569 32683744 -87061154 + L2 LINE L2 2910 3081 -191 465 281 252 5 chr13 32683816 32684026 -87060872 - MIR SINE MIR 0 262 1 192 353 47 12 chr13 32684044 32684129 -87060769 + L2 LINE L2 3184 3271 -1 236 311 11 56 chr13 32684336 32684426 -87060472 + L2 LINE L2 3184 3269 -3 435 317 0 22 chr13 32684656 32684839 -87060059 + GA-rich Low_complexity Low_complexity 1 179 0 203 258 30 30 chr13 32684985 32685051 -87059847 + MIR3 SINE MIR 137 202 -6 1282 236 106 64 chr13 32685155 32685609 -87059289 + MLT2B1 LTR ERVL 1 479 -41 378 0 0 0 chr13 32685609 32685651 -87059247 + (TG)n Simple_repeat Simple_repeat 2 43 0 1282 236 106 64 chr13 32685651 32685695 -87059203 + MLT2B1 LTR ERVL 479 520 0 1255 233 34 15 chr13 32687143 32687405 -87057493 + AluJb SINE Alu 9 275 -37 180 256 0 0 chr13 32688657 32688700 -87056198 - MIR SINE MIR -3 259 217 341 259 79 36 chr13 32688845 32688984 -87055914 - HsTC2 DNA Tc2 -104 1794 1650 * 405 174 209 0 chr13 32688983 32689069 -87055829 - HsTC2 DNA Tc2 -1764 134 31 388 179 214 0 chr13 32689156 32689240 -87055658 - HsTC2 DNA Tc2 -1766 132 31 300 356 83 21 chr13 32689584 32689921 -87054977 - L2 LINE L2 -404 2910 2553 410 258 43 0 chr13 32690134 32690227 -87054671 - L2 LINE L2 -2 3270 3174 1618 190 102 8 chr13 32690785 32691179 -87053719 - MER63 DNA MER1_type -1 1060 630 634 355 44 19 chr13 32691185 32691329 -87053569 - L2 LINE L2 -436 2878 2739 1492 100 45 0 chr13 32691329 32691549 -87053349 - MER30 DNA MER1_type 0 230 1 634 355 44 19 chr13 32691549 32691765 -87053133 - L2 LINE L2 -575 2739 2509 15123 196 18 29 chr13 32692536 32696359 -87048539 - L1MA4 LINE L1 -6 7713 3850 471 87 0 0 chr13 32696359 32696428 -87048470 - L1MA3 LINE L1 -1 6304 6236 15123 196 18 29 chr13 32696428 32697619 -87047279 - L1MA4 LINE L1 -3869 3850 2758 1980 150 40 0 chr13 32697619 32697919 -87046979 - AluSx SINE Alu 0 312 1 15123 196 18 29 chr13 32697919 32698095 -87046803 - L1MA4 LINE L1 -4961 2758 2582 186 43 0 0 chr13 32698171 32698194 -87046704 + (TA)n Simple_repeat Simple_repeat 2 24 0 5474 148 26 18 chr13 32698194 32699639 -87045259 - L1PB3 LINE L1 -1 6153 4706 1561 307 65 18 chr13 32699647 32700353 -87044545 - L1MA4 LINE L1 -6122 1444 706 5274 235 85 12 chr13 32700385 32701638 -87043260 - L1M1 LINE L1 -4065 1263 9 205 362 26 26 chr13 32702304 32702456 -87042442 - L3b LINE CR1 -328 1255 1104 274 393 124 5 chr13 32702703 32702904 -87041994 - L3 LINE CR1 -1132 445 221 556 256 25 103 chr13 32703464 32703706 -87041192 + MIR SINE MIR 26 248 -14 231 360 0 11 chr13 32704287 32704376 -87040522 + L2 LINE L2 3196 3283 -30 540 184 0 7 chr13 32704376 32704484 -87040414 - L1MA6 LINE L1 -295 5871 5770 2248 162 14 7 chr13 32704484 32704898 -87040000 + L1MA6 LINE L1 5879 6295 -5 21 0 0 0 chr13 32704905 32704926 -87039972 + AT_rich Low_complexity Low_complexity 1 21 0 2361 84 3 0 chr13 32705278 32705574 -87039324 + AluY SINE Alu 1 297 -14 21 71 0 0 chr13 32705869 32705911 -87038987 + AT_rich Low_complexity Low_complexity 1 42 0 249 276 0 0 chr13 32705950 32706008 -87038890 - L2 LINE L2 -223 3049 2992 212 254 141 42 chr13 32706025 32706096 -87038802 + MER91C DNA MER1_type 31 108 -32 7493 21 4 0 chr13 32706132 32707685 -87037213 + L1PA3 LINE L1 4593 6152 -3 2012 121 37 0 chr13 32707757 32708055 -87036843 - AluY SINE Alu 0 311 3 259 302 52 51 chr13 32708212 32708494 -87036404 - MLT1J LTR MaLR -161 454 110 893 186 6 0 chr13 32708894 32709050 -87035848 + L1PB4 LINE L1 5982 6138 -18 1328 110 24 5 chr13 32710458 32710667 -87034231 - L1PA13 LINE L1 -2 6161 5949 1060 210 134 7 chr13 32710670 32710869 -87034029 - L1MD2 LINE L1 -1 6358 6109 219 88 0 0 chr13 32710869 32710903 -87033995 + (TG)n Simple_repeat Simple_repeat 2 35 0 1060 210 134 7 chr13 32710903 32710993 -87033905 - L1MD2 LINE L1 -250 6109 6032 1306 243 73 18 chr13 32711251 32711687 -87033211 + L1MD2 LINE L1 5615 6074 -285 1374 202 31 39 chr13 32711688 32712044 -87032854 - MLT1A1 LTR MaLR -12 353 1 313 238 8 41 chr13 32712044 32712166 -87032732 + L1MD2 LINE L1 6068 6185 -174 231 269 0 39 chr13 32712361 32712439 -87032459 - MIR SINE MIR -180 82 8 293 258 113 24 chr13 32712882 32713006 -87031892 + L2 LINE L2 3138 3272 0 1972 131 34 0 chr13 32713257 32713548 -87031350 - AluSg SINE Alu -9 301 1 1002 196 0 5 chr13 32713670 32713874 -87031024 - MER3 DNA MER1_type -1 208 6 1239 206 51 71 chr13 32714137 32714530 -87030368 + MLT1D LTR MaLR 1 385 -120 284 260 34 2 chr13 32714650 32714779 -87030119 - L1M LINE L1 -749 5413 5281 274 253 0 0 chr13 32714802 32714885 -87030013 - L1M4 LINE L1 -933 5213 5131 1236 260 40 46 chr13 32714921 32715497 -87029401 + MER21B LTR ERV1 162 784 -79 770 304 93 27 chr13 32715510 32716207 -87028691 - L1MEc LINE L1 -2790 3636 2894 366 317 59 69 chr13 32716234 32716540 -87028358 - L1MEc LINE L1 -4237 2370 2068 1923 189 21 3 chr13 32716578 32716979 -87027919 + MER61C LTR ERV1 13 404 -30 598 308 59 17 chr13 32717014 32717491 -87027407 - L1MEc LINE L1 -4634 1973 1477 357 266 60 82 chr13 32717685 32717869 -87027029 - L1MEc LINE L1 -5433 993 814 25 0 0 0 chr13 32717939 32717964 -87026934 + AT_rich Low_complexity Low_complexity 1 25 0 940 139 30 0 chr13 32717964 32718130 -87026768 - L1MA3 LINE L1 0 6305 6135 423 238 98 21 chr13 32718137 32718330 -87026568 - Charlie7 DNA MER1_type -1945 667 460 308 289 62 0 chr13 32718866 32718963 -87025935 - MIR SINE MIR -43 219 117 863 251 37 8 chr13 32718964 32719109 -87025789 - MLT1E1 LTR MaLR 0 654 498 893 167 6 0 chr13 32719109 32719277 -87025621 + L1MA5 LINE L1 6132 6300 0 863 251 37 8 chr13 32719277 32719374 -87025524 - MLT1E1 LTR MaLR -156 498 405 316 177 33 73 chr13 32719406 32719566 -87025332 - MLT1E1 LTR MaLR -433 221 51 199 304 33 22 chr13 32720942 32721034 -87023864 - MIR SINE MIR -45 217 125 208 358 127 6 chr13 32721500 32721665 -87023233 + L2 LINE L2 2434 2618 -696 2709 210 81 15 chr13 32722003 32722748 -87022150 - Charlie1a DNA MER1_type -1306 1455 760 1965 135 55 22 chr13 32722748 32723111 -87021787 + THE1C LTR MaLR 1 375 0 9947 121 30 38 chr13 32723111 32724703 -87020195 + THE1C-int LTR MaLR 1 1580 0 1720 130 109 29 chr13 32724703 32725050 -87019848 + THE1C LTR MaLR 1 375 0 2709 210 81 15 chr13 32725050 32725265 -87019633 - Charlie1a DNA MER1_type -2000 761 368 1371 219 82 30 chr13 32725265 32725666 -87019232 + MLT2B1 LTR ERVL 2 423 -97 269 87 0 22 chr13 32725666 32725712 -87019186 + (TC)n Simple_repeat Simple_repeat 2 46 0 306 0 0 0 chr13 32725712 32725746 -87019152 + (CA)n Simple_repeat Simple_repeat 2 35 0 1484 212 45 17 chr13 32725784 32726143 -87018755 - Charlie1a DNA MER1_type -1082 373 5 397 257 59 0 chr13 32726258 32726394 -87018504 + MLT1K LTR MaLR 379 522 -66 200 35 35 0 chr13 32726394 32726423 -87018475 + (TC)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr13 32726679 32726703 -87018195 + (T)n Simple_repeat Simple_repeat 1 24 0 2172 101 3 3 chr13 32726873 32727171 -87017727 - AluY SINE Alu -13 298 1 542 315 64 5 chr13 32727406 32727625 -87017273 - MIR SINE MIR 0 262 31 221 277 12 48 chr13 32727678 32727761 -87017137 - L2 LINE L2 -4 3309 3230 402 311 115 43 chr13 32728318 32728623 -87016275 - L3 LINE CR1 -21 1556 1230 180 0 0 0 chr13 32728964 32728984 -87015914 + (A)n Simple_repeat Simple_repeat 1 20 0 1784 174 19 25 chr13 32730170 32730537 -87014361 - MLT1A1 LTR MaLR 0 365 1 219 233 62 123 chr13 32732297 32732443 -87012455 + MIR SINE MIR 56 192 -70 204 70 70 0 chr13 32732629 32732672 -87012226 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 713 313 37 67 chr13 32733511 32733946 -87010952 - L2 LINE L2 -2 3311 2890 307 319 72 30 chr13 32734859 32735025 -87009873 + L2 LINE L2 2695 2867 -447 2515 163 12 0 chr13 32735420 32735843 -87009055 - MSTA LTR MaLR 0 428 1 192 338 44 0 chr13 32735913 32735981 -87008917 + MIR SINE MIR 38 108 -100 204 348 70 81 chr13 32736523 32736615 -87008283 + L2 LINE L2 2807 2898 -374 860 149 20 51 chr13 32736615 32736810 -87008088 - MER53 DNA DNA 0 189 1 204 348 70 81 chr13 32736810 32737186 -87007712 + L2 LINE L2 2898 3270 -2 304 307 102 0 chr13 32738118 32738245 -87006653 + L1ME4a LINE L1 5573 5712 -409 280 273 13 0 chr13 32738259 32738336 -87006562 + L1ME4a LINE L1 5788 5865 -256 346 281 51 39 chr13 32738639 32738817 -87006081 + L1ME4a LINE L1 5942 6121 0 918 253 89 50 chr13 32740358 32740797 -87004101 + MLT1C LTR MaLR 6 461 -6 355 202 167 39 chr13 32740797 32740914 -87003984 + MIR SINE MIR 18 161 -93 1290 157 197 14 chr13 32740914 32741208 -87003690 + MER7A DNA MER2_type 1 346 0 355 202 167 39 chr13 32741208 32741245 -87003653 + MIR SINE MIR 161 192 -62 205 326 0 0 chr13 32741883 32741932 -87002966 + L2 LINE L2 3008 3056 -257 1986 138 3 22 chr13 32742514 32742832 -87002066 + AluSx SINE Alu 1 312 0 2420 96 0 0 chr13 32743123 32743425 -87001473 - AluSg SINE Alu -8 302 1 235 125 0 0 chr13 32743442 32743482 -87001416 - MER103 DNA DNA -119 47 8 2182 104 7 0 chr13 32743777 32744065 -87000833 - AluSx SINE Alu -22 290 1 289 331 50 50 chr13 32745275 32745414 -86999484 + MIR3 SINE MIR 4 142 -66 4175 96 12 5 chr13 32745556 32746152 -86998746 - L1PA11 LINE L1 0 6174 5575 951 297 88 23 chr13 32746181 32746622 -86998276 - LTR16C LTR ERVL 0 491 22 21 0 0 0 chr13 32746682 32746703 -86998195 + AT_rich Low_complexity Low_complexity 1 21 0 1004 202 0 5 chr13 32747100 32747288 -86997610 - MER58A DNA MER1_type 0 224 38 325 314 65 20 chr13 32747298 32747451 -86997447 - L1ME LINE L1 -353 5809 5650 1911 141 0 14 chr13 32747471 32747755 -86997143 + AluSx SINE Alu 1 280 -32 363 254 97 92 chr13 32747990 32748218 -86996680 - L1MEd LINE L1 -5871 248 20 231 329 57 0 chr13 32748369 32748439 -86996459 + L2 LINE L2 3150 3223 -49 193 276 103 60 chr13 32748882 32748998 -86995900 - L2 LINE L2 -262 3051 2931 335 58 58 0 chr13 32749233 32749285 -86995613 + CT-rich Low_complexity Low_complexity 4 58 0 1807 119 8 0 chr13 32749285 32749537 -86995361 - AluSx SINE Alu -3 309 56 4796 194 36 7 chr13 32750345 32750499 -86994399 + L1MC3 LINE L1 5311 5459 -2326 192 77 0 0 chr13 32750499 32750525 -86994373 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4796 194 36 7 chr13 32750525 32751452 -86993446 + L1MC3 LINE L1 5459 6424 -1361 3713 191 133 42 chr13 32751469 32751876 -86993022 + L1MC3 LINE L1 6614 6982 -803 2752 118 80 4 chr13 32751876 32752350 -86992548 + L1MA4 LINE L1 5785 6294 -6 3713 191 133 42 chr13 32752350 32753016 -86991882 + L1MC3 LINE L1 6982 7785 0 24 32 0 0 chr13 32753146 32753177 -86991721 + AT_rich Low_complexity Low_complexity 1 31 0 28 95 0 0 chr13 32753533 32753617 -86991281 + AT_rich Low_complexity Low_complexity 1 84 0 576 338 49 21 chr13 32754407 32754735 -86990163 + L2 LINE L2 2020 2356 -958 216 284 101 81 chr13 32754873 32755021 -86989877 + L2 LINE L2 2564 2714 -600 1085 120 0 21 chr13 32755164 32755355 -86989543 - L1MA5A LINE L1 -1 6296 6110 392 298 50 8 chr13 32755496 32755617 -86989281 + L2 LINE L2 3145 3270 -2 270 81 0 0 chr13 32756499 32756536 -86988362 + (TA)n Simple_repeat Simple_repeat 2 38 0 233 258 43 0 chr13 32756548 32756641 -86988257 + L1MC4 LINE L1 6622 6718 -1324 198 71 0 0 chr13 32756644 32756672 -86988226 + (TA)n Simple_repeat Simple_repeat 1 28 0 424 254 30 18 chr13 32756683 32756848 -86988050 - L1M4 LINE L1 -957 5189 5023 1339 80 6 6 chr13 32756851 32757026 -86987872 - AluSp SINE Alu -3 310 136 490 291 102 11 chr13 32757096 32757467 -86987431 - L1M4 LINE L1 -1212 4934 4530 321 324 65 46 chr13 32757506 32757834 -86987064 + L2 LINE L2 2635 3055 -258 458 338 47 5 chr13 32757834 32758263 -86986635 + L1M4 LINE L1 3964 4410 -1736 333 214 90 11 chr13 32758264 32758353 -86986545 + L1M4 LINE L1 4419 4514 -1632 753 257 58 35 chr13 32758393 32758929 -86985969 + L1M4 LINE L1 3159 3747 -2399 36 53 0 0 chr13 32758945 32759002 -86985896 + AT_rich Low_complexity Low_complexity 1 57 0 37 23 0 0 chr13 32759118 32759162 -86985736 + AT_rich Low_complexity Low_complexity 1 44 0 1780 243 67 80 chr13 32759182 32760312 -86984586 + L1M4 LINE L1 3797 4912 -1234 24487 42 42 2 chr13 32760316 32763562 -86981336 + L1P LINE L1 3 3378 -2768 277 206 0 27 chr13 32764613 32764686 -86980212 + MER116 DNA Mariner 2 72 -8 306 106 0 0 chr13 32765475 32765522 -86979376 + (GA)n Simple_repeat Simple_repeat 2 48 0 14471 24 1 0 chr13 32766749 32769223 -86975675 + L1PA3 LINE L1 3677 6151 -4 346 264 147 48 chr13 32769237 32769468 -86975430 + L1M4 LINE L1 4566 4819 -1327 325 218 26 26 chr13 32769823 32769901 -86974997 - MIR SINE MIR -113 149 72 1121 191 69 132 chr13 32771055 32771478 -86973420 - MSTD LTR MaLR 0 396 1 3067 268 61 35 chr13 32771748 32772718 -86972180 + L2 LINE L2 2045 3034 -279 2658 184 5 40 chr13 32772725 32773294 -86971604 - MER89 LTR ERV1 -10 549 1 500 313 85 31 chr13 32773294 32773553 -86971345 + L2 LINE L2 3032 3304 -9 2121 192 35 76 chr13 32773607 32773793 -86971105 + L1MD3 LINE L1 7415 7607 -388 2145 85 0 21 chr13 32773793 32774074 -86970824 + AluY SINE Alu 37 311 0 2121 192 35 76 chr13 32774074 32774490 -86970408 + L1MD3 LINE L1 7607 7992 -3 234 279 93 107 chr13 32774770 32774910 -86969988 - L2 LINE L2 -219 3053 2916 1743 175 0 7 chr13 32775738 32776018 -86968880 + AluJb SINE Alu 1 278 -34 797 230 151 42 chr13 32776592 32776949 -86967949 - L1ME1 LINE L1 -5 6161 5766 1586 251 77 20 chr13 32776998 32777277 -86967621 - MER97a DNA MER1_type? -334 560 298 210 37 0 0 chr13 32777277 32777304 -86967594 + (TG)n Simple_repeat Simple_repeat 2 28 0 1586 251 77 20 chr13 32777304 32777531 -86967367 - MER97a DNA MER1_type? -596 298 25 246 176 0 0 chr13 32777859 32777910 -86966988 + GA-rich Low_complexity Low_complexity 2 52 0 186 310 113 14 chr13 32778443 32778514 -86966384 + L2 LINE L2 3186 3263 -9 262 365 88 0 chr13 32779856 32780004 -86964894 - L2 LINE L2 -218 3054 2894 269 373 28 14 chr13 32780045 32780187 -86964711 - L2 LINE L2 -486 2828 2685 204 222 0 0 chr13 32781977 32782013 -86962885 + polypurine Low_complexity Low_complexity 1 36 0 180 125 0 0 chr13 32782544 32782576 -86962322 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 207 269 115 26 chr13 32782640 32782718 -86962180 + L2 LINE L2 3161 3245 -27 29 60 0 0 chr13 32782803 32782853 -86962045 + AT_rich Low_complexity Low_complexity 1 50 0 576 215 80 10 chr13 32783513 32783713 -86961185 + MER33 DNA MER1_type 12 225 -99 364 271 0 8 chr13 32783768 32783886 -86961012 + MER33 DNA MER1_type 245 361 -2 531 315 79 68 chr13 32783950 32784394 -86960504 + L1MEd LINE L1 2 450 -5669 663 313 70 12 chr13 32784536 32785054 -86959844 + L1M4 LINE L1 3223 3770 -2376 387 191 11 11 chr13 32785095 32785184 -86959714 + L1ME1 LINE L1 5893 5981 -185 1271 258 103 4 chr13 32785297 32785773 -86959125 + L1MC4 LINE L1 6935 7457 -585 403 286 12 12 chr13 32785893 32786064 -86958834 + L1MC4 LINE L1 7864 8034 -8 194 103 0 51 chr13 32786195 32786234 -86958664 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 227 288 18 96 chr13 32787419 32787752 -86957146 + L2 LINE L2 2343 2649 -665 1347 209 110 128 chr13 32789270 32790224 -86954674 - LTR1B LTR ERV1 0 1020 3 24 0 0 0 chr13 32790781 32790805 -86954093 + AT_rich Low_complexity Low_complexity 1 24 0 1761 242 87 23 chr13 32791222 32791788 -86953110 - MER21B LTR ERV1 -105 758 157 1907 153 0 11 chr13 32792010 32792326 -86952572 + AluJb SINE Alu 7 319 0 226 204 45 0 chr13 32792326 32792370 -86952528 - MER21B LTR ERV1 -771 92 47 341 289 13 7 chr13 32792612 32792761 -86952137 - L1M4 LINE L1 -1448 4698 4549 1376 214 109 19 chr13 32792793 32793186 -86951712 + MLT1E1 LTR MaLR 6 367 -257 939 248 8 20 chr13 32793203 32793457 -86951441 + AluSx SINE Alu 10 260 -52 1454 96 5 0 chr13 32793558 32793745 -86951153 + AluSg/x SINE Alu 120 307 -3 1003 213 4 29 chr13 32793752 32793996 -86950902 + MLT1E1 LTR MaLR 385 622 -2 21 71 0 0 chr13 32794050 32794092 -86950806 + AT_rich Low_complexity Low_complexity 1 42 0 725 313 111 27 chr13 32794231 32794707 -86950191 - L1M4 LINE L1 -1949 4197 3682 399 229 27 122 chr13 32794841 32795029 -86949869 - MER102a DNA MER1_type -8 322 153 2273 68 3 10 chr13 32796285 32796580 -86948318 - AluSq SINE Alu -20 293 1 699 236 56 14 chr13 32796696 32796921 -86947977 - MLT1J2 LTR MaLR -214 236 1 213 305 28 77 chr13 32798502 32798715 -86946183 + MIR SINE MIR 20 219 -43 376 337 0 18 chr13 32799032 32799195 -86945703 - MIR SINE MIR -32 230 71 296 256 144 0 chr13 32800230 32800320 -86944578 + MIR SINE MIR 30 132 -76 241 356 43 17 chr13 32800363 32800478 -86944420 - L2 LINE L2 -5 3308 3191 262 280 210 14 chr13 32801923 32802066 -86942832 + MIR SINE MIR 81 251 -11 1610 167 48 0 chr13 32803747 32804040 -86940858 - Tigger3(Golem) DNA MER2_type -2 3027 2721 1738 170 3 7 chr13 32804949 32805232 -86939666 + AluJo SINE Alu 1 282 -30 198 118 0 0 chr13 32805235 32805269 -86939629 + (TAA)n Simple_repeat Simple_repeat 2 35 0 379 258 10 10 chr13 32805689 32805786 -86939112 - MIR3 SINE MIR 0 208 112 384 318 8 58 chr13 32805940 32806182 -86938716 + MLT1H LTR MaLR 31 260 -289 234 296 93 0 chr13 32806298 32806406 -86938492 + MLT1H LTR MaLR 421 538 -11 238 363 56 31 chr13 32806717 32806877 -86938021 + MIR SINE MIR 21 184 -78 25 51 0 0 chr13 32808174 32808213 -86936685 + AT_rich Low_complexity Low_complexity 1 39 0 309 268 179 0 chr13 32808448 32808560 -86936338 - MIR SINE MIR -2 260 129 2542 77 0 0 chr13 32808740 32809051 -86935847 - AluY SINE Alu 0 311 1 1004 259 44 24 chr13 32809213 32809486 -86935412 + L1MEc LINE L1 159 425 -5971 2313 146 28 0 chr13 32809486 32809876 -86935022 + MER57A LTR ERV1 3 403 0 1004 259 44 24 chr13 32809876 32810615 -86934283 + L1MEc LINE L1 425 1237 -5159 327 339 57 32 chr13 32810718 32810998 -86933900 - MLT1K LTR MaLR -132 456 170 239 336 67 25 chr13 32811279 32811398 -86933500 + L2 LINE L2 3137 3260 -12 186 43 0 0 chr13 32811550 32811573 -86933325 + (T)n Simple_repeat Simple_repeat 1 23 0 297 218 13 13 chr13 32812533 32812611 -86932287 - HsTC2 DNA Tc2 -1820 78 1 376 304 52 0 chr13 32814555 32814690 -86930208 + MIR SINE MIR 51 192 -70 330 286 118 32 chr13 32814907 32815127 -86929771 + L2 LINE L2 2359 2597 -717 246 359 22 0 chr13 32815258 32815350 -86929548 + L2 LINE L2 3216 3309 -4 229 245 75 0 chr13 32815374 32815427 -86929471 - MIR SINE MIR -87 175 119 530 90 0 0 chr13 32815705 32815783 -86929115 - Alu SINE Alu -2 308 231 805 235 27 76 chr13 32817080 32817184 -86927714 - L1ME2 LINE L1 -5 6159 6051 2474 123 55 26 chr13 32817184 32817600 -86927298 + MSTC LTR MaLR 1 428 0 805 235 27 76 chr13 32817600 32817823 -86927075 - L1ME2 LINE L1 -113 6051 5848 946 231 103 41 chr13 32817930 32818320 -86926578 - MLT1G LTR MaLR -151 439 26 2029 147 14 0 chr13 32818539 32818832 -86926066 + AluSx SINE Alu 1 297 -15 404 177 0 62 chr13 32819195 32819291 -86925607 + MLT1D LTR MaLR 20 109 -517 1313 241 33 41 chr13 32819296 32819795 -86925103 + MLT1C LTR MaLR 6 505 0 896 194 112 23 chr13 32819806 32820064 -86924834 + MLT1D LTR MaLR 153 433 -72 2071 175 13 8 chr13 32820150 32820538 -86924360 + MLT1B LTR MaLR 1 390 0 220 374 84 9 chr13 32820559 32820666 -86924232 - MIR3 SINE MIR -54 154 40 341 294 126 14 chr13 32821707 32821850 -86923048 - MIR SINE MIR -84 178 20 197 257 196 34 chr13 32821844 32821992 -86922906 - MIR SINE MIR -22 240 69 * 837 201 11 11 chr13 32822317 32822506 -86922392 - MER53 DNA DNA 0 189 1 2884 152 47 80 chr13 32822614 32823461 -86921437 + L1MB8 LINE L1 5140 5964 -214 1979 104 61 0 chr13 32823461 32823739 -86921159 + AluY SINE Alu 1 295 -16 2884 152 47 80 chr13 32823739 32823780 -86921118 + L1MB8 LINE L1 5964 6005 -173 488 196 9 0 chr13 32823899 32824006 -86920892 + L1MB8 LINE L1 6064 6171 -7 1730 192 0 22 chr13 32824073 32824390 -86920508 + AluJo SINE Alu 2 311 -1 686 173 39 45 chr13 32824491 32824670 -86920228 + MLT1A1 LTR MaLR 185 362 -3 319 247 45 0 chr13 32824673 32824762 -86920136 - L1MC4a LINE L1 -1105 6703 6611 25 51 0 0 chr13 32824866 32824905 -86919993 + AT_rich Low_complexity Low_complexity 1 39 0 25285 92 21 3 chr13 32824910 32829519 -86915379 - L1PA8 LINE L1 -20 6467 1778 6805 105 3 15 chr13 32829510 32830520 -86914378 - L1PA8 LINE L1 -5454 1007 10 * 2060 156 0 3 chr13 32830535 32830837 -86914061 - AluSx SINE Alu -11 301 1 705 218 94 0 chr13 32831106 32831207 -86913691 - MER5A DNA MER1_type 0 189 99 225 0 0 0 chr13 32831207 32831232 -86913666 + (TG)n Simple_repeat Simple_repeat 1 25 0 705 218 94 0 chr13 32831232 32831300 -86913598 - MER5A DNA MER1_type -90 99 4 1612 189 106 64 chr13 32832012 32832468 -86912430 + MER34B LTR ERV1 1 467 -98 1619 206 3 10 chr13 32832468 32832769 -86912129 + AluJo SINE Alu 1 299 -13 1612 189 106 64 chr13 32832769 32832873 -86912025 + MER34B LTR ERV1 467 565 0 282 56 0 0 chr13 32832993 32833029 -86911869 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1438 182 74 4 chr13 32833032 32833179 -86911719 - AluJo SINE Alu -30 282 147 327 49 0 0 chr13 32833179 32833220 -86911678 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1438 182 74 4 chr13 32833220 32833330 -86911568 - AluJo SINE Alu -165 147 7 28 29 0 0 chr13 32833341 32833376 -86911522 + AT_rich Low_complexity Low_complexity 1 35 0 2407 61 6 10 chr13 32833860 32834172 -86910726 - AluY SINE Alu 0 311 1 279 0 0 0 chr13 32834255 32834286 -86910612 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 449 212 27 49 chr13 32834407 32834460 -86910438 - MER53 DNA DNA -2 187 134 2189 141 122 8 chr13 32834460 32834844 -86910054 - MSTA LTR MaLR 0 428 1 449 212 27 49 chr13 32834844 32834974 -86909924 - MER53 DNA DNA -55 134 8 2456 69 0 13 chr13 32835138 32835443 -86909455 - AluY SINE Alu -10 301 1 452 191 0 0 chr13 32835610 32835694 -86909204 + LTR62 LTR ERVK 1 84 -635 3355 154 40 27 chr13 32835795 32836470 -86908428 + LTR62 LTR ERVK 34 717 -2 618 277 27 27 chr13 32836519 32836743 -86908155 - MLT1H1 LTR MaLR -5 550 327 983 225 100 81 chr13 32836759 32837230 -86907668 + MER34 LTR ERV1 3 482 -60 243 241 35 0 chr13 32837230 32837317 -86907581 + (TA)n Simple_repeat Simple_repeat 1 90 0 706 222 34 36 chr13 32837433 32837676 -86907222 - MLT1H1 LTR MaLR -291 264 1 294 188 31 0 chr13 32837915 32838011 -86906887 + (TA)n Simple_repeat Simple_repeat 1 99 0 487 253 32 19 chr13 32838011 32838169 -86906729 + MER105 DNA DNA 43 202 -2 330 26 0 0 chr13 32838355 32838394 -86906504 + (CA)n Simple_repeat Simple_repeat 2 40 0 2738 7 0 3 chr13 32838603 32838905 -86905993 - AluYa5 SINE Alu -10 301 1 2546 211 31 31 chr13 32839250 32839800 -86905098 - MLT2B3 LTR ERVL -2 552 3 208 386 8 24 chr13 32841292 32841419 -86903479 - L2 LINE L2 -482 2832 2708 1017 275 144 27 chr13 32841549 32841952 -86902946 - L2 LINE L2 0 3313 2864 527 84 56 47 chr13 32842326 32842433 -86902465 + LTR45B LTR ERV1 343 450 -39 495 281 189 6 chr13 32842546 32842710 -86902188 - L2 LINE L2 -586 2728 2535 312 236 69 0 chr13 32844078 32844150 -86900748 + MIR SINE MIR 61 137 -71 1562 150 78 38 chr13 32844164 32844371 -86900527 - MER46B DNA MER2_type -2495 236 133 1848 177 7 7 chr13 32844371 32844670 -86900228 + AluJb SINE Alu 1 299 -13 1562 150 78 38 chr13 32844670 32844808 -86900090 - MER46B DNA MER2_type -2598 133 2 449 314 68 39 chr13 32844821 32845028 -86899870 - MIR SINE MIR -46 216 4 1926 206 40 0 chr13 32845192 32845571 -86899327 + MSTD LTR MaLR 1 394 -2 252 0 0 0 chr13 32845644 32845672 -86899226 + (CA)n Simple_repeat Simple_repeat 1 28 0 986 211 24 87 chr13 32846345 32846736 -86898162 + L1ME1 LINE L1 5674 6034 -132 2032 219 7 7 chr13 32846746 32847171 -86897727 - MLT1C LTR MaLR 0 467 43 2488 161 37 40 chr13 32847171 32847741 -86897157 - MER34C LTR ERV1 0 585 18 287 130 0 0 chr13 32847712 32847758 -86897140 - MLT1C LTR MaLR -421 46 1 * 437 148 188 0 chr13 32847758 32847859 -86897039 + L1ME1 LINE L1 6042 6161 -5 261 139 0 0 chr13 32848169 32848212 -86896686 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 259 114 48 chr13 32848229 32848395 -86896503 + L2 LINE L2 2915 3091 -181 7590 178 94 9 chr13 32848931 32850745 -86894153 - L1 LINE L1 -3706 2676 681 261 0 0 0 chr13 32850745 32850774 -86894124 + (TG)n Simple_repeat Simple_repeat 2 30 0 7590 178 94 9 chr13 32850774 32850901 -86893997 - L1 LINE L1 -5701 681 566 231 321 46 9 chr13 32850958 32851067 -86893831 - MER117 DNA MER1_type -51 146 34 289 331 82 0 chr13 32852031 32852183 -86892715 - MIR SINE MIR -54 208 45 515 296 43 5 chr13 32853642 32853828 -86891070 - MIR SINE MIR -14 248 56 498 248 0 0 chr13 32854505 32854922 -86889976 + (TG)n Simple_repeat Simple_repeat 1 417 0 233 268 0 0 chr13 32855338 32855394 -86889504 + (CA)n Simple_repeat Simple_repeat 1 56 0 548 232 6 0 chr13 32855406 32855583 -86889315 + (CA)n Simple_repeat Simple_repeat 1 178 0 263 275 88 47 chr13 32855889 32856060 -86888838 - L2 LINE L2 -955 2359 2182 1937 155 3 28 chr13 32859762 32860079 -86884819 - AluJb SINE Alu -3 309 1 196 294 162 0 chr13 32860080 32860148 -86884750 + MIR SINE MIR 114 192 -70 1044 266 58 30 chr13 32861011 32861406 -86883492 - MLT1I LTR MaLR 0 409 4 791 188 8 0 chr13 32861775 32861908 -86882990 + MER2 DNA MER2_type 1 134 -211 368 256 12 0 chr13 32861963 32862045 -86882853 + MER2 DNA MER2_type 263 345 0 274 189 21 53 chr13 32863117 32863212 -86881686 - MLT1I LTR MaLR 0 409 318 8928 116 58 12 chr13 32863246 32864689 -86880209 + THE1C-int LTR MaLR 67 1574 -6 1152 190 203 16 chr13 32864694 32865010 -86879888 + THE1C LTR MaLR 1 375 0 462 318 96 46 chr13 32865137 32865187 -86879711 - MIR SINE MIR -1 261 215 2302 94 0 0 chr13 32865187 32865475 -86879423 - AluSg SINE Alu -21 289 2 462 318 96 46 chr13 32865475 32865663 -86879235 - MIR SINE MIR -47 215 11 1128 249 86 90 chr13 32865818 32866042 -86878856 - MLT1E LTR MaLR -1 592 369 2348 83 0 6 chr13 32866042 32866355 -86878543 + AluY SINE Alu 1 311 0 1128 249 86 90 chr13 32866355 32866664 -86878234 - MLT1E LTR MaLR -224 369 61 366 313 41 29 chr13 32866967 32867312 -86877586 - L1ME4a LINE L1 -183 5938 5590 284 236 43 41 chr13 32867631 32867777 -86877121 - L1ME4a LINE L1 -646 5475 5327 666 266 41 22 chr13 32869638 32869905 -86874993 - L1ME4a LINE L1 -1031 5115 4844 835 228 43 17 chr13 32870127 32870483 -86874415 + L1M4 LINE L1 5144 5511 -667 239 233 0 0 chr13 32870488 32870548 -86874350 + LTR68 LTR ERV1 5 64 -676 1831 164 53 0 chr13 32870724 32871065 -86873833 + MER47A DNA MER2_type 8 366 0 3672 187 25 36 chr13 32871216 32871444 -86873454 + L1MB8 LINE L1 4902 5131 -1047 2477 177 88 4 chr13 32871444 32871924 -86872974 - MLT2B1 LTR ERVL 0 520 1 3672 187 25 36 chr13 32871924 32872895 -86872003 + L1MB8 LINE L1 5131 6084 -94 800 278 91 37 chr13 32875895 32876098 -86868800 - HAL1 LINE L1 -383 2124 1933 306 0 0 0 chr13 32876098 32876132 -86868766 + (TG)n Simple_repeat Simple_repeat 2 35 0 800 278 91 37 chr13 32876132 32876388 -86868510 - HAL1 LINE L1 -574 1933 1640 21 0 0 0 chr13 32876415 32876436 -86868462 + AT_rich Low_complexity Low_complexity 1 21 0 1366 274 120 58 chr13 32876634 32878122 -86866776 - HAL1 LINE L1 -927 1580 1 251 243 99 45 chr13 32878860 32878971 -86865927 - MER117 DNA MER1_type -79 118 2 286 136 0 0 chr13 32881072 32881116 -86863782 + AluSx SINE Alu 1 44 -258 2101 92 46 0 chr13 32881117 32881398 -86863500 + AluSx SINE Alu 15 308 -4 692 48 0 0 chr13 32882127 32882210 -86862688 + AluSx SINE Alu 23 105 -207 847 230 14 14 chr13 32882210 32882469 -86862429 - LTR12 LTR ERV1 -136 578 216 1206 166 5 45 chr13 32882617 32882840 -86862058 + AluSx SINE Alu 99 312 0 268 298 255 27 chr13 32883069 32883257 -86861641 + MIR SINE MIR 16 246 -16 198 156 0 0 chr13 32883280 32883325 -86861573 + A-rich Low_complexity Low_complexity 1 45 0 500 250 86 0 chr13 32884374 32884526 -86860372 - MLT2F LTR ERVL -14 649 485 416 286 61 0 chr13 32884769 32884916 -86859982 + MIR SINE MIR 36 191 -71 467 249 167 17 chr13 32884919 32885152 -86859746 - L2 LINE L2 0 3313 3046 1385 221 97 19 chr13 32885153 32885515 -86859383 - MLT1E LTR MaLR 0 593 204 336 334 51 68 chr13 32885677 32885939 -86858959 - L2 LINE L2 -258 3055 2798 749 216 92 80 chr13 32887301 32887824 -86857074 - L1M4 LINE L1 -1296 4850 4322 234 0 0 0 chr13 32888156 32888182 -86856716 + (TTG)n Simple_repeat Simple_repeat 2 27 0 225 289 100 22 chr13 32888553 32888643 -86856255 - MIR SINE MIR -101 161 65 22 56 0 0 chr13 32890345 32890381 -86854517 + AT_rich Low_complexity Low_complexity 1 36 0 243 324 65 14 chr13 32890834 32890973 -86853925 - L2 LINE L2 -1 3312 3167 212 338 83 8 chr13 32891233 32891366 -86853532 - L2 LINE L2 -602 2712 2570 291 71 0 0 chr13 32892216 32892258 -86852640 + (TG)n Simple_repeat Simple_repeat 1 42 0 3894 179 95 3 chr13 32893575 32894331 -86850567 + LTR1B LTR ERV1 1 826 0 2171 104 0 7 chr13 32896088 32896386 -86848512 + AluY SINE Alu 1 296 -15 22 0 0 0 chr13 32896917 32896939 -86847959 + AT_rich Low_complexity Low_complexity 1 22 0 2275 110 13 0 chr13 32897047 32897355 -86847543 + AluSx SINE Alu 1 312 0 287 299 127 0 chr13 32897608 32897742 -86847156 - L2 LINE L2 0 3272 3122 205 312 37 107 chr13 32898200 32898415 -86846483 + L2 LINE L2 298 497 -2817 260 264 58 0 chr13 32898614 32898701 -86846197 - MLT1J LTR MaLR -35 476 385 1153 233 56 15 chr13 32898721 32899112 -86845786 + LTR52 LTR ERVL 1 407 -14 919 319 31 11 chr13 32899127 32899481 -86845417 - MLT1J LTR MaLR -149 362 2 251 265 0 36 chr13 32899928 32900011 -86844887 + CT-rich Low_complexity Low_complexity 1 80 0 2085 148 0 7 chr13 32900301 32900604 -86844294 - AluSq SINE Alu -12 301 1 826 253 140 80 chr13 32900677 32901176 -86843722 - MLT1F1 LTR MaLR -10 557 4 897 324 140 44 chr13 32901191 32902599 -86842299 + L2 LINE L2 1756 3309 -4 1275 188 122 24 chr13 32902599 32902934 -86841964 - MER39 LTR ERV1 0 707 340 473 228 110 8 chr13 32902937 32903064 -86841834 - MER39 LTR ERV1 -567 140 1 895 185 85 25 chr13 32903835 32904035 -86840863 - AluJo SINE Alu -1 311 100 1547 173 121 36 chr13 32904054 32904243 -86840655 + LTR2B LTR ERV1 34 205 -285 246 62 0 0 chr13 32904243 32904275 -86840623 + (TTCTG)n Simple_repeat Simple_repeat 2 33 0 1547 173 121 36 chr13 32904275 32904506 -86840392 + LTR2B LTR ERV1 205 490 0 331 286 19 8 chr13 32904506 32904632 -86840266 - AluJ SINE Alu -197 105 17 234 224 0 0 chr13 32906023 32906072 -86838826 - L2 LINE L2 0 3313 3265 333 186 0 0 chr13 32906158 32906228 -86838670 + (CTA)n Simple_repeat Simple_repeat 2 71 0 256 200 44 33 chr13 32906743 32906833 -86838065 - HAL1 LINE L1 -476 2031 1941 589 242 81 57 chr13 32906861 32907279 -86837619 - HAL1 LINE L1 -1048 1459 1032 374 331 12 45 chr13 32907454 32907696 -86837202 + L2 LINE L2 3080 3313 0 300 282 72 76 chr13 32908240 32908502 -86836396 - L1ME LINE L1 -634 5528 5268 3456 259 46 7 chr13 32908605 32909596 -86835302 + ERVL LTR ERVL 1484 2513 -3251 533 318 10 28 chr13 32909597 32909847 -86835051 + ERVL LTR ERVL 2641 2892 -2768 453 239 99 85 chr13 32909847 32910048 -86834850 + MER58C DNA MER1_type 1 204 -11 2231 256 41 4 chr13 32910055 32910618 -86834280 + ERVL LTR ERVL 2921 3504 -2260 367 199 14 2 chr13 32910631 32910712 -86834186 + ERVL LTR ERVL 4285 4399 -1120 810 136 0 57 chr13 32910943 32911083 -86833815 - FLAM_C SINE Alu -1 132 1 2531 300 57 15 chr13 32911085 32912517 -86832381 + ERVL LTR ERVL 3633 5122 -363 1997 176 7 90 chr13 32912524 32913082 -86831816 + L1MB8 LINE L1 5667 6178 0 421 289 8 16 chr13 32913083 32913211 -86831687 + ERVL LTR ERVL 5176 5302 -462 459 183 206 0 chr13 32913222 32913353 -86831545 - L1MD3 LINE L1 -1020 6975 6818 * 755 290 89 47 chr13 32913352 32914058 -86830840 - L1MEc LINE L1 -4128 2268 1533 303 293 36 72 chr13 32914248 32914582 -86830316 - L1M4 LINE L1 -2054 4092 3771 2106 99 3 54 chr13 32914744 32915058 -86829840 + AluSp SINE Alu 1 298 -15 518 283 139 9 chr13 32915501 32915731 -86829167 - HsTC2a DNA Tc2 -467 277 18 23 33 0 0 chr13 32916238 32916268 -86828630 + AT_rich Low_complexity Low_complexity 1 30 0 191 300 0 0 chr13 32916817 32916867 -86828031 - MIR SINE MIR -10 252 203 368 312 75 23 chr13 32917116 32917289 -86827609 + MLT1J2 LTR MaLR 255 436 -14 318 245 69 58 chr13 32917495 32917617 -86827281 + MIR SINE MIR 30 152 -60 2356 183 14 20 chr13 32919238 32919741 -86825157 + MER89 LTR ERV1 1 500 -59 192 261 0 0 chr13 32920364 32920429 -86824469 + CT-rich Low_complexity Low_complexity 1 65 0 225 94 0 0 chr13 32920441 32920473 -86824425 + (T)n Simple_repeat Simple_repeat 1 32 0 2153 100 4 0 chr13 32922313 32922593 -86822305 + AluSg SINE Alu 17 297 -13 217 281 0 16 chr13 32923274 32923338 -86821560 + L2 LINE L2 3210 3272 0 394 202 25 25 chr13 32923775 32923894 -86821004 - MER103 DNA DNA -25 141 23 1268 218 7 24 chr13 32924119 32924408 -86820490 + MLT1C LTR MaLR 1 284 -183 323 185 9 130 chr13 32924400 32924508 -86820390 - MER4A LTR ERV1 -197 467 373 * 228 111 22 22 chr13 32924562 32924607 -86820291 - MER4A LTR ERV1 -566 98 54 966 185 39 5 chr13 32924626 32924831 -86820067 + MLT1C LTR MaLR 248 459 -8 286 351 177 26 chr13 32924882 32925147 -86819751 + L2 LINE L2 2968 3272 0 2022 130 0 0 chr13 32926413 32926690 -86818208 - AluSx SINE Alu -15 297 21 351 96 0 0 chr13 32926722 32926774 -86818124 + (TG)n Simple_repeat Simple_repeat 2 53 0 2661 166 66 4 chr13 32926789 32927302 -86817596 - L1MB3 LINE L1 -3 6180 5636 201 208 21 0 chr13 32927435 32927483 -86817415 + (TTA)n Simple_repeat Simple_repeat 3 51 0 205 191 48 0 chr13 32927868 32927910 -86816988 - MIR SINE MIR -111 151 108 231 113 19 38 chr13 32928096 32928149 -86816749 + (TA)n Simple_repeat Simple_repeat 1 52 0 664 269 47 0 chr13 32928218 32928389 -86816509 + MIR SINE MIR 78 256 -6 831 258 77 65 chr13 32928941 32929445 -86815453 + LTR33A LTR ERVL 2 511 -12 504 291 105 12 chr13 32930179 32930351 -86814547 - MIR SINE MIR -63 199 12 2054 120 40 0 chr13 32931125 32931425 -86813473 - AluSq SINE Alu -1 312 1 371 310 166 51 chr13 32932870 32933280 -86811618 - L2 LINE L2 -1 3271 2815 186 261 0 0 chr13 32933960 32934006 -86810892 + MIR SINE MIR 171 216 -46 3678 65 43 0 chr13 32934359 32934851 -86810047 - LTR10D LTR ERV1 0 513 1 22 0 0 0 chr13 32935255 32935277 -86809621 + AT_rich Low_complexity Low_complexity 1 22 0 218 255 0 0 chr13 32936309 32936356 -86808542 + MIR SINE MIR 100 146 -116 22 35 0 0 chr13 32936411 32936440 -86808458 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 32939026 32939047 -86805851 + (CAA)n Simple_repeat Simple_repeat 2 22 0 209 176 0 20 chr13 32939597 32939648 -86805250 + CT-rich Low_complexity Low_complexity 2 51 0 691 239 171 11 chr13 32940913 32941177 -86803721 - LTR16A LTR ERVL 0 450 145 498 325 86 11 chr13 32941271 32941551 -86803347 + L2 LINE L2 2384 2684 -630 1014 231 37 34 chr13 32941781 32942131 -86802767 - LTR37A LTR ERV1 -58 368 18 361 204 19 46 chr13 32942236 32942344 -86802554 - MER94 DNA DNA -29 105 1 331 252 27 45 chr13 32944851 32944962 -86799936 - L1ME4a LINE L1 -69 6052 5944 446 265 112 19 chr13 32944966 32945181 -86799717 - L1ME4a LINE L1 -254 5867 5633 450 0 0 0 chr13 32945197 32945247 -86799651 + (TG)n Simple_repeat Simple_repeat 2 51 0 249 286 29 14 chr13 32946707 32946777 -86798121 - L2 LINE L2 -11 3261 3191 186 143 0 0 chr13 32946807 32946842 -86798056 + (TAG)n Simple_repeat Simple_repeat 3 37 0 452 254 147 52 chr13 32946842 32947074 -86797824 - MIR SINE MIR 0 262 9 183 307 27 40 chr13 32947115 32947190 -86797708 + MIR SINE MIR 89 162 -100 300 118 0 0 chr13 32947912 32947963 -86796935 + L1MB2 LINE L1 6079 6129 -42 227 196 0 18 chr13 32948528 32948584 -86796314 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 257 77 26 0 chr13 32949571 32949610 -86795288 - MSTD LTR MaLR 0 396 357 504 157 11 0 chr13 32949621 32949710 -86795188 - MLT1A1-int LTR MaLR -1645 90 1 1391 210 8 72 chr13 32949710 32950100 -86794798 - MLT1A1 LTR MaLR 0 365 1 798 199 117 123 chr13 32950173 32950540 -86794358 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr13 32950613 32950634 -86794264 + AT_rich Low_complexity Low_complexity 1 21 0 404 280 88 39 chr13 32951371 32951553 -86793345 - L2 LINE L2 -4 3309 3119 655 92 0 0 chr13 32952164 32952308 -86792590 + AluSc SINE Alu 195 338 0 292 284 23 0 chr13 32952663 32952751 -86792147 + L1ME LINE L1 5553 5642 -479 1293 274 108 27 chr13 32952766 32953545 -86791353 + L2 LINE L2 2446 3310 -3 744 175 68 178 chr13 32953761 32953916 -86790982 + MLT1A1 LTR MaLR 4 174 -191 1639 119 0 5 chr13 32953916 32954135 -86790763 - AluSg/x SINE Alu -20 290 73 744 175 68 178 chr13 32954135 32954378 -86790520 + MLT1A1 LTR MaLR 174 358 -7 313 259 309 31 chr13 32956255 32956417 -86788481 - MIR SINE MIR -48 214 8 586 291 84 53 chr13 32956453 32956776 -86788122 + MLT1G1 LTR MaLR 47 379 -216 244 314 20 72 chr13 32956913 32957066 -86787832 - MER45C DNA AcHobo -488 465 321 646 257 208 4 chr13 32957069 32957310 -86787588 - MER45C DNA AcHobo -576 377 88 337 206 48 0 chr13 32958192 32958255 -86786643 + MER5A DNA MER1_type 124 189 0 1771 189 0 0 chr13 32958618 32958909 -86785989 - AluJo SINE Alu -19 293 3 292 277 176 34 chr13 32958922 32959070 -86785828 + MIR SINE MIR 53 221 -41 180 307 9 53 chr13 32959096 32959210 -86785688 + MIR SINE MIR 108 216 -46 360 0 0 0 chr13 32960154 32960194 -86784704 + (CA)n Simple_repeat Simple_repeat 2 41 0 3134 179 52 42 chr13 32960822 32961603 -86783295 - L1MB1 LINE L1 -12 6220 5432 1683 224 10 0 chr13 32961604 32961987 -86782911 - L1MB1 LINE L1 -912 5298 4912 1074 222 35 106 chr13 32961995 32962390 -86782508 - L1MB1 LINE L1 -4517 1614 1277 5696 45 22 18 chr13 32962390 32963105 -86781793 + SVA Other Other 665 1382 -4 1074 222 35 106 chr13 32963105 32963440 -86781458 - L1MB1 LINE L1 -4854 1277 920 293 314 12 0 chr13 32963428 32963514 -86781384 - L1MB1 LINE L1 -5151 990 904 * 274 286 39 78 chr13 32963991 32964145 -86780753 - L1MB1 LINE L1 -5487 644 497 819 365 69 11 chr13 32964174 32964607 -86780291 - L1MB1 LINE L1 -5683 458 1 2456 91 0 0 chr13 32964781 32965089 -86779809 + AluSc SINE Alu 1 308 -1 358 306 180 27 chr13 32965881 32966103 -86778795 + MIR SINE MIR 5 260 -2 246 174 152 43 chr13 32966098 32966190 -86778708 + L2 LINE L2 3134 3235 -78 * 1790 152 0 4 chr13 32967608 32967877 -86777021 - AluSx SINE Alu -42 270 3 847 248 9 77 chr13 32968213 32968536 -86776362 - L1MC5 LINE L1 -1021 6940 6640 2076 138 0 0 chr13 32968604 32968894 -86776004 - AluSx SINE Alu -22 290 1 499 320 59 41 chr13 32969260 32969647 -86775251 - HAL1b LINE L1 -734 614 221 684 211 26 10 chr13 32969806 32970000 -86774898 + L1MA4A LINE L1 5926 6122 -181 429 228 0 0 chr13 32970004 32970096 -86774802 + L1MA4A LINE L1 6189 6280 -23 2272 105 3 10 chr13 32970139 32970452 -86774446 - AluY SINE Alu 0 311 1 1807 226 51 44 chr13 32971618 32971887 -86773011 + L1MC4 LINE L1 7282 7548 -494 6733 76 5 2 chr13 32971887 32972844 -86772054 + L1PA7 LINE L1 5194 6152 -2 1807 226 51 44 chr13 32972844 32973166 -86771732 + L1MC4 LINE L1 7548 7877 -165 542 253 7 47 chr13 32973166 32973316 -86771582 + MER82 DNA MER2_type 1 144 -509 1217 185 25 126 chr13 32973316 32973721 -86771177 - MLT1A1 LTR MaLR 0 365 2 815 201 0 0 chr13 32973722 32973876 -86771022 + MER82 DNA MER2_type 140 293 -360 492 226 7 15 chr13 32973968 32974105 -86770793 + L1MC4 LINE L1 7907 8042 0 23 33 0 0 chr13 32975352 32975382 -86769516 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 32975457 32975478 -86769420 + AT_rich Low_complexity Low_complexity 1 21 0 197 284 134 0 chr13 32977060 32977127 -86767771 + MIR3 SINE MIR 81 156 -52 208 0 62 0 chr13 32977160 32977192 -86767706 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3225 22 0 0 chr13 32977192 32977562 -86767336 - L1PA3 LINE L1 -18 6137 5768 23 0 0 0 chr13 32978835 32978858 -86766040 + AT_rich Low_complexity Low_complexity 1 23 0 879 311 73 74 chr13 32979263 32979410 -86765488 + L1MEd LINE L1 75 221 -5898 1983 132 10 0 chr13 32979410 32979698 -86765200 - AluSc SINE Alu -18 291 1 879 311 73 74 chr13 32979698 32980021 -86764877 + L1MEd LINE L1 221 543 -5576 2598 153 29 14 chr13 32980021 32980504 -86764394 + L1MB2 LINE L1 5682 6171 0 879 311 73 74 chr13 32980504 32981198 -86763700 + L1MEd LINE L1 543 1239 -4880 333 200 17 0 chr13 32981254 32981314 -86763584 + MER70B LTR ERVL 1 61 -517 312 87 0 0 chr13 32981314 32981360 -86763538 + MADE1 DNA Mariner 1 46 -34 * 2156 213 17 5 chr13 32981359 32981767 -86763131 + MER70A LTR ERVL 60 472 0 323 278 86 35 chr13 32981829 32982084 -86762814 + L1MEd LINE L1 1430 1697 -4613 34 0 0 0 chr13 32982350 32982384 -86762514 + AT_rich Low_complexity Low_complexity 1 34 0 239 264 11 11 chr13 32982401 32982488 -86762410 - L1M4 LINE L1 -3525 2621 2535 1205 279 73 42 chr13 32983575 32984948 -86759950 + L1MDa LINE L1 1811 3242 -3298 699 310 108 23 chr13 32984955 32985342 -86759556 + L1MDa LINE L1 3395 3814 -2726 1418 278 79 30 chr13 32985464 32986159 -86758739 + L1MDa LINE L1 4090 4749 -1791 2401 211 19 64 chr13 32986159 32986800 -86758098 - LTR9 LTR ERV1 0 612 1 1418 278 79 30 chr13 32986800 32987298 -86757600 + L1MDa LINE L1 4749 5437 -1103 777 288 36 25 chr13 32987328 32987606 -86757292 + MLT1G LTR MaLR 10 290 -300 1752 220 65 21 chr13 32987676 32987852 -86757046 - MLT1D LTR MaLR 0 505 338 2021 138 6 13 chr13 32987852 32988164 -86756734 - AluSx SINE Alu -2 310 1 1752 220 65 21 chr13 32988164 32988460 -86756438 - MLT1D LTR MaLR -167 338 12 508 217 52 40 chr13 32988471 32988643 -86756255 + MLT1F LTR MaLR 356 507 -35 443 331 66 8 chr13 32989488 32989745 -86755153 - L3 LINE CR1 -166 1411 1140 413 299 140 62 chr13 32989749 32990214 -86754684 - MLT1J LTR MaLR 0 511 11 1753 127 0 0 chr13 32990274 32990511 -86754387 + AluSx SINE Alu 63 299 -13 428 346 56 5 chr13 32990706 32990920 -86753978 - L3 LINE CR1 -685 892 668 701 294 93 40 chr13 32992666 32993193 -86751705 + MLT1H1 LTR MaLR 1 555 0 407 277 216 28 chr13 32993398 32993611 -86751287 + MIR SINE MIR 10 262 0 228 86 0 0 chr13 32993799 32993834 -86751064 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2495 32 0 3 chr13 32993836 32994120 -86750778 - AluY SINE Alu -28 283 1 585 299 0 0 chr13 32994879 32995013 -86749885 + MER63 DNA MER1_type 1 760 -302 193 292 0 0 chr13 32996362 32996410 -86748488 - MIR SINE MIR -67 141 94 363 310 18 26 chr13 32996581 32996694 -86748204 - MIR SINE MIR -137 125 14 2579 97 11 6 chr13 32996955 32997317 -86747581 - THE1B LTR MaLR 0 364 1 375 23 0 0 chr13 32997972 32998016 -86746882 + (TG)n Simple_repeat Simple_repeat 2 45 0 25 51 0 0 chr13 32999232 32999271 -86745627 + AT_rich Low_complexity Low_complexity 1 39 0 1692 216 39 18 chr13 32999790 33000174 -86744724 - MSTD LTR MaLR -2 394 3 556 200 26 113 chr13 33000407 33000613 -86744285 + LTR37B LTR ERV1 186 358 -110 1517 174 24 24 chr13 33000613 33000901 -86743997 - AluJo SINE Alu -24 288 1 556 200 26 113 chr13 33000901 33001004 -86743894 + LTR37B LTR ERV1 358 468 0 428 272 73 31 chr13 33001438 33001629 -86743269 - MIR SINE MIR -43 219 21 368 348 76 67 chr13 33003381 33003897 -86741001 + L2 LINE L2 2766 3292 -21 1770 156 8 78 chr13 33004290 33004675 -86740223 + MLT1B LTR MaLR 1 358 -32 305 367 61 18 chr13 33005262 33005491 -86739407 + MIR SINE MIR 8 246 -16 552 261 65 62 chr13 33006566 33006826 -86738072 + MLT1H LTR MaLR 226 486 -63 223 286 14 14 chr13 33007745 33007815 -86737083 - MIR SINE MIR 0 262 193 1822 156 0 36 chr13 33008286 33008594 -86736304 + AluJo SINE Alu 1 297 -15 1653 239 90 37 chr13 33008693 33009182 -86735716 + MLT2B1 LTR ERVL 1 515 -5 230 43 29 87 chr13 33009686 33009755 -86735143 + (TA)n Simple_repeat Simple_repeat 1 65 0 243 45 26 110 chr13 33009785 33009940 -86734958 + (TA)n Simple_repeat Simple_repeat 2 143 0 402 47 77 47 chr13 33009957 33010127 -86734771 + (TA)n Simple_repeat Simple_repeat 2 176 0 280 254 42 17 chr13 33010213 33010331 -86734567 - L1MEc LINE L1 -4700 1696 1576 * 848 142 90 52 chr13 33010329 33010481 -86734417 - L1MA9 LINE L1 0 6312 6148 216 0 0 0 chr13 33010481 33010505 -86734393 + (TG)n Simple_repeat Simple_repeat 1 24 0 848 142 90 52 chr13 33010505 33010564 -86734334 - L1MA9 LINE L1 -164 6148 6093 249 33 0 0 chr13 33010598 33010628 -86734270 + (TA)n Simple_repeat Simple_repeat 1 30 0 1810 174 15 9 chr13 33010665 33011005 -86733893 - MER47A DNA MER2_type -3 363 22 363 96 0 0 chr13 33011007 33011059 -86733839 + (CA)n Simple_repeat Simple_repeat 2 53 0 230 79 0 26 chr13 33011223 33011261 -86733637 + (CAT)n Simple_repeat Simple_repeat 2 38 0 623 292 68 9 chr13 33011293 33011512 -86733386 + MIR SINE MIR 31 262 0 686 289 63 24 chr13 33011552 33011967 -86732931 - L1MCc LINE L1 -4121 3001 2571 41 0 0 0 chr13 33012006 33012047 -86732851 + AT_rich Low_complexity Low_complexity 1 41 0 17560 114 10 4 chr13 33012179 33015473 -86729425 - L1PA8A LINE L1 0 6446 3151 5522 177 13 32 chr13 33015474 33017520 -86727378 - L1PA8A LINE L1 -4288 2173 1 428 271 66 11 chr13 33017522 33017703 -86727195 - L1MCc LINE L1 -4639 2483 2293 * 5401 166 54 3 chr13 33017691 33018190 -86726708 - L1MA9 LINE L1 0 6312 5840 276 30 0 0 chr13 33018190 33018223 -86726675 + (TG)n Simple_repeat Simple_repeat 1 33 0 5401 166 54 3 chr13 33018223 33018876 -86726022 - L1MA9 LINE L1 -472 5840 5111 600 284 77 61 chr13 33018876 33019442 -86725456 - L1MCc LINE L1 -4805 2317 1761 1819 89 0 4 chr13 33019442 33019677 -86725221 - AluSc SINE Alu -4 305 72 600 284 77 61 chr13 33019677 33020079 -86724819 - L1MCc LINE L1 -5361 1761 1130 229 335 75 62 chr13 33020305 33020678 -86724220 - L1MCc LINE L1 -5965 458 81 2254 114 7 3 chr13 33020847 33021155 -86723743 - AluSc SINE Alu 0 309 1 313 227 209 18 chr13 33021495 33021605 -86723293 - MIR SINE MIR -81 181 51 189 306 46 37 chr13 33021686 33021794 -86723104 - MIR SINE MIR -59 203 95 1837 144 85 0 chr13 33023509 33023828 -86721070 - MER46B DNA MER2_type -14 222 2 2351 100 3 0 chr13 33025008 33025308 -86719590 + AluSx SINE Alu 1 301 -11 208 325 58 58 chr13 33025834 33025988 -86718910 - MIR SINE MIR -56 206 53 750 174 0 0 chr13 33026024 33026145 -86718753 - FLAM_A SINE Alu 0 142 22 2187 199 31 51 chr13 33026203 33026715 -86718183 - MLT1D LTR MaLR -2 503 2 249 277 65 65 chr13 33026986 33027141 -86717757 - MER103 DNA DNA -1 165 11 279 373 78 33 chr13 33028278 33028431 -86716467 - L2 LINE L2 -6 3266 3107 430 222 35 62 chr13 33028667 33028811 -86716087 - MER5B DNA MER1_type -1 177 38 496 276 60 10 chr13 33028994 33029144 -86715754 + MIR SINE MIR 2 153 -64 1825 248 113 4 chr13 33029184 33029714 -86715184 + L1MC4 LINE L1 7467 7995 0 632 288 85 33 chr13 33030542 33030966 -86713932 - L1MC/D LINE L1 -1998 5810 5365 496 284 168 5 chr13 33031179 33031376 -86713522 + MIR SINE MIR 23 251 -11 1644 194 54 44 chr13 33033002 33033388 -86711510 + MLT1B LTR MaLR 1 390 0 212 344 0 0 chr13 33033830 33033894 -86711004 - MIR3 SINE MIR -35 173 110 312 286 150 7 chr13 33033922 33034062 -86710836 + MIR SINE MIR 97 256 -6 1007 181 6 0 chr13 33034440 33034611 -86710287 + FRAM SINE Alu 1 168 -8 2243 99 3 3 chr13 33034611 33034903 -86709995 + AluSc SINE Alu 1 292 -17 332 198 0 12 chr13 33034929 33035010 -86709888 + GA-rich Low_complexity Low_complexity 3 82 0 226 301 27 0 chr13 33035456 33035529 -86709369 - MLT1J LTR MaLR -59 452 378 634 256 160 8 chr13 33035597 33035835 -86709063 - MLT1J LTR MaLR -237 274 1 2307 93 7 0 chr13 33035919 33036209 -86708689 - AluSq SINE Alu -21 292 1 354 23 0 0 chr13 33036613 33036656 -86708242 + (CA)n Simple_repeat Simple_repeat 1 43 0 348 24 0 0 chr13 33036655 33036696 -86708202 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 257 271 86 76 chr13 33036775 33036985 -86707913 - MER102b DNA MER1_type -49 292 81 252 122 0 0 chr13 33037364 33037405 -86707493 + (TG)n Simple_repeat Simple_repeat 1 41 0 181 337 144 10 chr13 33037578 33037780 -86707118 - L2 LINE L2 -531 2783 2555 2128 132 0 0 chr13 33037976 33038272 -86706626 + AluSx SINE Alu 1 296 -16 1137 270 167 22 chr13 33038817 33039273 -86705625 - MLT1G1 LTR MaLR -1 594 73 390 301 66 88 chr13 33039572 33039798 -86705100 + L2 LINE L2 3045 3265 -7 279 312 76 27 chr13 33040691 33040883 -86704015 + MIR SINE MIR 6 208 -54 237 234 117 63 chr13 33040883 33040994 -86703904 + L2 LINE L2 3197 3313 0 227 259 0 17 chr13 33040995 33041053 -86703845 + MIR SINE MIR 204 260 -2 201 304 11 22 chr13 33041060 33041152 -86703746 + (TAG)n Simple_repeat Simple_repeat 1 91 0 1041 153 119 84 chr13 33041897 33042186 -86702712 - MER57A LTR ERV1 0 403 111 1876 140 0 4 chr13 33042194 33042497 -86702401 + AluSx SINE Alu 15 316 0 1760 319 15 33 chr13 33042764 33042912 -86701986 - MER57-int LTR ERV1 -588 6949 6800 1874 179 55 0 chr13 33042912 33043242 -86701656 + MER7A DNA MER2_type 1 346 0 1760 319 15 33 chr13 33043242 33043824 -86701074 - MER57-int LTR ERV1 -737 6800 6232 2307 51 0 20 chr13 33044257 33044553 -86700345 + AluY SINE Alu 1 290 -21 233 29 29 0 chr13 33044553 33044587 -86700311 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 893 271 73 84 chr13 33044802 33045428 -86699470 - MER57-int LTR ERV1 -780 6207 3930 3229 221 72 96 chr13 33045578 33046807 -86698091 - MER57-int LTR ERV1 -1716 5821 4623 2027 98 0 41 chr13 33046807 33047127 -86697771 + AluSc SINE Alu 1 308 0 3229 221 72 96 chr13 33047127 33047216 -86697682 - MER57-int LTR ERV1 -2914 4623 4533 423 223 62 46 chr13 33047422 33047552 -86697346 - MER57-int LTR ERV1 -7291 246 115 1713 165 0 7 chr13 33047621 33047912 -86696986 - AluSg SINE Alu -8 302 14 31 26 0 0 chr13 33048210 33048248 -86696650 + AT_rich Low_complexity Low_complexity 1 38 0 379 308 0 0 chr13 33048617 33048750 -86696148 + (TA)n Simple_repeat Simple_repeat 2 134 0 439 243 33 59 chr13 33050139 33050220 -86694678 - MIR SINE MIR -112 150 73 1863 174 0 10 chr13 33050220 33050519 -86694379 - AluSx SINE Alu -16 296 1 439 243 33 59 chr13 33050519 33050589 -86694309 - MIR SINE MIR -189 73 3 2798 10 0 7 chr13 33051182 33051489 -86693409 - AluY SINE Alu -6 305 1 233 245 0 0 chr13 33052039 33052092 -86692806 - L2 LINE L2 -4 3309 3257 2381 89 3 0 chr13 33053533 33053837 -86691061 + AluY SINE Alu 1 305 -6 255 212 35 88 chr13 33053980 33054055 -86690843 + MIR SINE MIR 130 199 -63 2150 246 25 14 chr13 33054055 33054567 -86690331 - LTR40a LTR ERVL 0 519 2 255 212 35 88 chr13 33054567 33054604 -86690294 + MIR SINE MIR 199 236 -26 2265 115 0 0 chr13 33055417 33055722 -86689176 - AluSx SINE Alu -7 305 1 359 225 166 0 chr13 33055954 33056092 -86688806 - MER5A DNA MER1_type -20 158 4 2347 93 0 0 chr13 33057832 33058132 -86686766 + AluSx SINE Alu 1 300 -12 2415 59 0 29 chr13 33058134 33058440 -86686458 + AluY SINE Alu 3 299 -12 245 109 22 0 chr13 33059204 33059250 -86685648 + (TG)n Simple_repeat Simple_repeat 1 47 0 624 276 126 0 chr13 33059404 33059578 -86685320 + MIR SINE MIR 18 213 -49 267 321 92 18 chr13 33059826 33059935 -86684963 - MIR SINE MIR -126 136 20 29 0 0 0 chr13 33059952 33059981 -86684917 + AT_rich Low_complexity Low_complexity 1 29 0 427 296 70 28 chr13 33060800 33060942 -86683956 + L2 LINE L2 3125 3272 0 619 280 62 36 chr13 33061083 33061390 -86683508 - MER102b DNA MER1_type 0 341 27 225 213 131 0 chr13 33061421 33061482 -86683416 - MIR SINE MIR -142 120 52 205 88 29 0 chr13 33061512 33061546 -86683352 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr13 33061557 33061585 -86683313 + AT_rich Low_complexity Low_complexity 1 28 0 1594 55 10 30 chr13 33061738 33061939 -86682959 - MER107 DNA MER1_type 0 197 1 377 225 11 34 chr13 33062057 33062146 -86682752 - MIR SINE MIR -171 91 5 1997 120 28 0 chr13 33062275 33062558 -86682340 + AluSg SINE Alu 1 291 -19 617 179 11 17 chr13 33062580 33062759 -86682139 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 665 171 23 0 chr13 33062794 33062969 -86681929 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 180 0 0 0 chr13 33063011 33063031 -86681867 + (CCA)n Simple_repeat Simple_repeat 1 20 0 219 307 0 0 chr13 33063300 33063437 -86681461 + (TG)n Simple_repeat Simple_repeat 2 138 0 371 245 133 117 chr13 33063778 33064162 -86680736 + LTR33 LTR ERVL 82 471 -50 206 100 0 50 chr13 33065151 33065191 -86679707 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 1122 85 13 0 chr13 33066335 33066488 -86678410 - L1PA14 LINE L1 -4 6157 6003 374 275 25 25 chr13 33069277 33069397 -86675501 - MIR SINE MIR 0 262 143 239 346 0 66 chr13 33069396 33069578 -86675320 + L2 LINE L2 2342 2511 -803 * 262 255 98 0 chr13 33069620 33069722 -86675176 + L2 LINE L2 2809 2920 -352 598 348 68 20 chr13 33069770 33070162 -86674736 + L2 LINE L2 2577 2996 -317 292 270 90 36 chr13 33070532 33070643 -86674255 - MIR SINE MIR -123 139 23 1902 173 28 30 chr13 33071069 33071627 -86673271 + MLT2A2 LTR ERVL 2 554 0 387 113 0 0 chr13 33072617 33072679 -86672219 + (CA)n Simple_repeat Simple_repeat 1 62 0 2246 165 24 14 chr13 33073243 33073668 -86671230 + MSTB1 LTR MaLR 1 429 -3 30 69 0 0 chr13 33074693 33074751 -86670147 + AT_rich Low_complexity Low_complexity 1 58 0 2122 84 44 3 chr13 33075394 33075691 -86669207 - L1PB1 LINE L1 0 6151 5843 321 259 6 18 chr13 33076361 33076527 -86668371 + CT-rich Low_complexity Low_complexity 1 164 0 255 367 115 0 chr13 33079178 33079317 -86665581 + L2 LINE L2 2828 2982 -331 1793 185 33 14 chr13 33079358 33079726 -86665172 + THE1C LTR MaLR 1 375 0 9083 131 13 33 chr13 33079732 33081317 -86663581 + THE1C-int LTR MaLR 27 1580 0 2108 146 30 19 chr13 33081317 33081688 -86663210 + THE1C LTR MaLR 1 375 0 187 213 106 0 chr13 33081688 33081735 -86663163 + L2 LINE L2 3011 3062 -251 308 313 97 7 chr13 33082762 33082906 -86661992 + MIR SINE MIR 57 213 -49 236 227 0 0 chr13 33083112 33083156 -86661742 - LTR33 LTR ERVL 0 521 478 804 216 22 5 chr13 33083405 33083590 -86661308 - MER5A DNA MER1_type 0 189 2 3053 164 44 81 chr13 33084103 33084611 -86660287 + L1MC3 LINE L1 6968 7434 -351 1744 129 3 96 chr13 33084611 33084725 -86660173 + AluSx SINE Alu 2 125 -177 228 35 0 0 chr13 33084725 33084754 -86660144 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1744 129 3 96 chr13 33084754 33084971 -86659927 + AluSx SINE Alu 125 302 0 3053 164 44 81 chr13 33084971 33085303 -86659595 + L1MC3 LINE L1 7434 7777 -8 390 21 0 0 chr13 33086267 33086314 -86658584 + (CA)n Simple_repeat Simple_repeat 1 47 0 263 348 107 30 chr13 33086429 33086728 -86658170 - L2 LINE L2 -680 2634 2313 318 146 0 0 chr13 33087028 33087076 -86657822 + L2 LINE L2 3266 3313 0 1985 133 75 20 chr13 33087413 33087758 -86657140 - THE1B LTR MaLR 0 364 1 222 204 20 0 chr13 33089105 33089154 -86655744 - L2 LINE L2 -13 3259 3210 640 283 128 5 chr13 33091237 33091470 -86653428 + MIR SINE MIR 8 248 -14 255 203 0 0 chr13 33094070 33094134 -86650764 + GA-rich Low_complexity Low_complexity 1 64 0 22 56 0 0 chr13 33094780 33094816 -86650082 + AT_rich Low_complexity Low_complexity 1 36 0 328 200 300 9 chr13 33095038 33095148 -86649750 - MIR SINE MIR -33 229 88 334 265 27 7 chr13 33095234 33095381 -86649517 + L1MC/D LINE L1 4456 4605 -1541 967 331 82 39 chr13 33096101 33096614 -86648284 + L2 LINE L2 1326 1860 -1454 820 92 9 0 chr13 33096621 33096730 -86648168 + AluSg/x SINE Alu 189 298 -11 273 303 71 0 chr13 33096732 33096831 -86648067 + L2 LINE L2 1854 1959 -1355 200 208 146 0 chr13 33096994 33097042 -86647856 - MIR SINE MIR -4 258 204 * 1220 284 186 46 chr13 33097025 33098174 -86646724 + L2 LINE L2 1991 3313 0 565 273 103 39 chr13 33098182 33098719 -86646179 + L1MC/D LINE L1 5197 5761 -409 23 33 0 0 chr13 33098774 33098804 -86646094 + AT_rich Low_complexity Low_complexity 1 30 0 1548 265 53 14 chr13 33098928 33099441 -86645457 - MLT1H1 LTR MaLR -6 549 17 198 351 38 8 chr13 33099606 33099737 -86645161 - L2 LINE L2 -1004 2310 2176 36 40 0 0 chr13 33100236 33100286 -86644612 + AT_rich Low_complexity Low_complexity 1 50 0 2311 75 3 47 chr13 33100485 33100806 -86644092 - AluY SINE Alu -4 307 1 378 310 46 56 chr13 33100860 33101189 -86643709 - L1ME3A LINE L1 -214 5956 5629 408 300 125 21 chr13 33101229 33101556 -86643342 - MLT1L LTR MaLR -52 563 203 334 292 33 2 chr13 33101752 33101925 -86642973 - L1ME3A LINE L1 -561 5601 5423 375 306 99 17 chr13 33101934 33102166 -86642732 - L1ME3A LINE L1 -756 5390 5140 691 278 15 93 chr13 33102348 33102618 -86642280 - MIR SINE MIR -13 249 1 228 277 0 0 chr13 33102821 33102868 -86642030 + polypyrimidine Low_complexity Low_complexity 4 50 0 230 363 44 26 chr13 33104326 33104439 -86640459 - L2 LINE L2 -36 3236 3122 2540 71 3 0 chr13 33105524 33105834 -86639064 - AluY SINE Alu 0 311 1 5709 89 3 44 chr13 33109111 33110025 -86634873 - L1PA11 LINE L1 -14 6160 5284 378 316 44 13 chr13 33110099 33110257 -86634641 - MIR SINE MIR 0 262 100 234 292 80 24 chr13 33110380 33110630 -86634268 + L1ME LINE L1 4342 4605 -1541 232 335 92 38 chr13 33110803 33111042 -86633856 - L2 LINE L2 -2607 707 456 24 0 0 0 chr13 33111092 33111116 -86633782 + AT_rich Low_complexity Low_complexity 1 24 0 462 329 59 29 chr13 33111232 33111797 -86633101 + L1ME LINE L1 4904 5545 -576 1748 166 13 23 chr13 33112022 33112323 -86632575 - AluJb SINE Alu -10 302 5 1686 148 3 42 chr13 33112638 33112779 -86632119 + AluSx SINE Alu 1 127 -185 2098 134 20 0 chr13 33112779 33113085 -86631813 + AluSx SINE Alu 1 312 0 1686 148 3 42 chr13 33113085 33113227 -86631671 + AluSx SINE Alu 127 273 -39 861 40 32 8 chr13 33113231 33113356 -86631542 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 26 30 0 0 chr13 33114344 33114377 -86630521 + AT_rich Low_complexity Low_complexity 1 33 0 466 277 95 92 chr13 33115159 33115484 -86629414 - L2 LINE L2 -1 3312 2987 439 304 51 42 chr13 33117039 33117205 -86627693 + MIR SINE MIR 44 214 -48 2341 124 91 8 chr13 33117205 33117600 -86627298 - MSTA LTR MaLR 0 428 1 439 304 51 42 chr13 33117600 33117650 -86627248 + MIR SINE MIR 214 262 0 200 288 75 62 chr13 33117662 33117742 -86627156 - L2 LINE L2 -25 3288 3208 389 354 78 0 chr13 33119268 33119460 -86625438 + MIR SINE MIR 41 247 -15 5813 144 73 6 chr13 33120317 33120675 -86624223 - L1PBa LINE L1 -3303 3559 3226 396 55 0 0 chr13 33120675 33120730 -86624168 + (TA)n Simple_repeat Simple_repeat 2 56 0 5813 144 73 6 chr13 33120730 33121942 -86622956 - L1PBa LINE L1 -3636 3226 1876 3198 156 7 31 chr13 33121943 33123070 -86621828 + L1PB1 LINE L1 4679 5791 -360 490 147 8 31 chr13 33123070 33123199 -86621699 + (TA)n Simple_repeat Simple_repeat 1 126 0 2327 101 14 20 chr13 33123199 33123554 -86621344 + L1PB1 LINE L1 5782 6134 -17 300 299 41 10 chr13 33124867 33124964 -86619934 + L2 LINE L2 3208 3307 -6 197 311 0 0 chr13 33125329 33125374 -86619524 + L2 LINE L2 3255 3299 -14 505 250 8 23 chr13 33126134 33126262 -86618636 + MIR SINE MIR 66 191 -71 1895 161 49 14 chr13 33126293 33126642 -86618256 - MLT1A1 LTR MaLR -2 363 3 281 293 38 45 chr13 33126793 33126926 -86617972 + L2 LINE L2 2439 2570 -744 269 276 109 13 chr13 33129925 33130081 -86614817 - ERVL LTR ERVL -335 5429 5259 467 313 108 11 chr13 33130309 33130577 -86614321 - ERVL LTR ERVL -2462 3302 3009 495 334 72 20 chr13 33130926 33131231 -86613667 - ERVL LTR ERVL -3163 2491 2171 3084 155 44 24 chr13 33131233 33131799 -86613099 + L1MB7 LINE L1 5280 5862 -322 2129 135 3 0 chr13 33131799 33132102 -86612796 + AluSx SINE Alu 1 304 -8 3084 155 44 24 chr13 33132102 33132169 -86612729 + L1MB7 LINE L1 5862 5926 -258 1745 313 50 13 chr13 33132147 33132840 -86612058 - L1MEc LINE L1 -5646 750 32 * 3344 269 48 54 chr13 33132837 33133801 -86611097 - L1MEc LINE L1 -1336 4879 3911 2339 109 0 0 chr13 33133801 33134114 -86610784 - AluSq SINE Alu 0 313 1 3344 269 48 54 chr13 33134114 33135908 -86608990 - L1MEc LINE L1 -2304 3911 2108 1717 142 15 4 chr13 33135908 33136176 -86608722 - AluSx SINE Alu -3 309 39 3344 269 48 54 chr13 33136176 33137544 -86607354 - L1MEc LINE L1 -4107 2108 288 246 83 333 0 chr13 33137552 33137600 -86607298 - L1M1 LINE L1 -5601 1964 1901 497 306 8 0 chr13 33137695 33137819 -86607079 - L2 LINE L2 0 3313 3189 13979 176 52 22 chr13 33139457 33142067 -86602831 + L1MA4A LINE L1 17 2704 -4861 10631 181 36 23 chr13 33142060 33145194 -86599704 + L1MA4A LINE L1 4462 7637 -85 * 2951 153 56 52 chr13 33145194 33145804 -86599094 + LTR9 LTR ERV1 1 612 0 10631 181 36 23 chr13 33145804 33145864 -86599034 + L1MA4A LINE L1 7637 7695 -27 22 0 0 0 chr13 33145878 33145900 -86598998 + AT_rich Low_complexity Low_complexity 1 22 0 2338 70 37 0 chr13 33145950 33146250 -86598648 + AluY SINE Alu 1 311 0 224 363 44 26 chr13 33147335 33147448 -86597450 + L2 LINE L2 3122 3236 -36 228 277 0 0 chr13 33148904 33148951 -86595947 + polypurine Low_complexity Low_complexity 4 50 0 693 278 15 93 chr13 33149154 33149424 -86595474 + MIR SINE MIR 1 249 -13 349 275 133 24 chr13 33149606 33150020 -86594878 + L1ME LINE L1 5140 5601 -561 513 300 125 21 chr13 33150216 33150543 -86594355 + MLT1L LTR MaLR 203 563 -52 241 326 38 8 chr13 33150635 33150767 -86594131 + L1ME LINE L1 5685 5820 -350 2297 75 3 47 chr13 33150966 33151287 -86593611 + AluY SINE Alu 1 307 -4 36 40 0 0 chr13 33151486 33151536 -86593362 + AT_rich Low_complexity Low_complexity 1 50 0 194 351 38 8 chr13 33152035 33152166 -86592732 + L2 LINE L2 2176 2310 -1004 1699 267 53 14 chr13 33152331 33152844 -86592054 + MLT1H1 LTR MaLR 17 549 -6 24 32 0 0 chr13 33152968 33152999 -86591899 + AT_rich Low_complexity Low_complexity 1 31 0 670 273 97 39 chr13 33153054 33153591 -86591307 - L1ME LINE L1 -409 5761 5197 1173 284 186 46 chr13 33153599 33154748 -86590150 - L2 LINE L2 0 3313 1991 202 208 146 0 chr13 33154731 33154779 -86590119 + MIR SINE MIR 204 258 -4 * 269 313 71 0 chr13 33154942 33155041 -86589857 - L2 LINE L2 -1355 1959 1854 811 92 9 0 chr13 33155043 33155152 -86589746 - AluSg/x SINE Alu -11 298 189 1055 313 80 41 chr13 33155159 33155674 -86589224 - L2 LINE L2 -1454 1860 1326 370 265 27 7 chr13 33156394 33156541 -86588357 - L1ME LINE L1 -1541 4605 4456 331 200 300 9 chr13 33156627 33156737 -86588161 + MIR SINE MIR 88 229 -33 22 56 0 0 chr13 33156959 33156995 -86587903 + AT_rich Low_complexity Low_complexity 1 36 0 327 181 0 0 chr13 33157644 33157716 -86587182 + CT-rich Low_complexity Low_complexity 1 72 0 630 266 132 9 chr13 33160316 33160549 -86584349 - MIR SINE MIR -14 248 8 220 204 20 0 chr13 33162632 33162681 -86582217 + L2 LINE L2 3210 3259 -13 1979 133 75 20 chr13 33164032 33164377 -86580521 + THE1B LTR MaLR 1 364 0 319 146 0 0 chr13 33164714 33164762 -86580136 - L2 LINE L2 0 3313 3266 268 307 131 30 chr13 33165062 33165361 -86579537 + L2 LINE L2 2313 2634 -680 390 21 0 0 chr13 33165476 33165523 -86579375 + (TG)n Simple_repeat Simple_repeat 1 47 0 3393 164 44 82 chr13 33166487 33166819 -86578079 - L1MC3 LINE L1 -8 7777 7434 1887 127 3 96 chr13 33166819 33167036 -86577862 - AluSx SINE Alu 0 302 125 228 35 0 0 chr13 33167036 33167065 -86577833 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1887 127 3 96 chr13 33167065 33167179 -86577719 - AluSx SINE Alu -177 125 2 3393 164 44 82 chr13 33167179 33167680 -86577218 - L1MC3 LINE L1 -351 7434 6975 233 259 19 0 chr13 33167680 33167734 -86577164 + LTR64 LTR ERVK 423 477 -81 903 211 22 5 chr13 33168200 33168385 -86576513 + MER5A DNA MER1_type 2 189 0 258 309 122 8 chr13 33168555 33168678 -86576220 + LTR33 LTR ERVL 385 521 0 294 313 97 7 chr13 33168884 33169028 -86575870 - MIR SINE MIR -49 213 57 183 213 106 0 chr13 33170055 33170102 -86574796 - L2 LINE L2 -251 3062 3011 2281 146 30 19 chr13 33170102 33170473 -86574425 - THE1C LTR MaLR 0 375 1 9881 130 12 33 chr13 33170473 33172060 -86572838 - THE1C-int LTR MaLR 0 1580 27 1959 185 33 14 chr13 33172066 33172434 -86572464 - THE1C LTR MaLR 0 375 1 250 367 115 0 chr13 33172475 33172614 -86572284 - L2 LINE L2 -331 2982 2828 321 259 6 18 chr13 33175265 33175431 -86569467 + GA-rich Low_complexity Low_complexity 1 164 0 2282 84 44 3 chr13 33176101 33176398 -86568500 + L1PB1 LINE L1 5843 6151 0 30 69 0 0 chr13 33177041 33177099 -86567799 + AT_rich Low_complexity Low_complexity 1 58 0 2468 165 24 12 chr13 33178124 33178548 -86566350 - MSTB1 LTR MaLR -3 429 1 333 125 0 0 chr13 33179111 33179167 -86565731 + (TG)n Simple_repeat Simple_repeat 1 56 0 2046 173 28 30 chr13 33180157 33180715 -86564183 - MLT2A2 LTR ERVL 0 554 2 287 270 90 36 chr13 33181141 33181252 -86563646 + MIR SINE MIR 23 139 -123 577 332 76 28 chr13 33181622 33182014 -86562884 - L2 LINE L2 -317 2996 2577 260 274 98 0 chr13 33182062 33182164 -86562734 - L2 LINE L2 -352 2920 2809 229 346 0 66 chr13 33182206 33182388 -86562510 - L2 LINE L2 -803 2511 2342 * 361 275 25 25 chr13 33182387 33182507 -86562391 + MIR SINE MIR 143 262 0 1189 92 13 0 chr13 33185296 33185449 -86559449 + L1PA14 LINE L1 6003 6157 -4 183 42 0 0 chr13 33186592 33186616 -86558282 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 498 240 133 117 chr13 33187623 33188007 -86556891 - LTR33 LTR ERVL -50 471 82 219 307 0 0 chr13 33188348 33188485 -86556413 + (CA)n Simple_repeat Simple_repeat 2 138 0 180 0 0 0 chr13 33188754 33188774 -86556124 + (TGG)n Simple_repeat Simple_repeat 1 20 0 665 171 23 0 chr13 33188816 33188991 -86555907 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 617 179 11 17 chr13 33189026 33189205 -86555693 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1997 120 28 0 chr13 33189227 33189510 -86555388 - AluSg SINE Alu -19 291 1 377 225 11 34 chr13 33189639 33189728 -86555170 + MIR SINE MIR 5 91 -171 1594 55 10 30 chr13 33189846 33190047 -86554851 + MER107 DNA MER1_type 1 197 0 36 70 0 0 chr13 33190200 33190271 -86554627 + AT_rich Low_complexity Low_complexity 1 71 0 225 213 131 0 chr13 33190301 33190362 -86554536 + MIR SINE MIR 52 120 -142 666 283 58 36 chr13 33190393 33190701 -86554197 + MER102b DNA MER1_type 27 341 0 427 296 70 28 chr13 33190842 33190984 -86553914 - L2 LINE L2 0 3272 3125 29 0 0 0 chr13 33191803 33191832 -86553066 + AT_rich Low_complexity Low_complexity 1 29 0 256 314 132 16 chr13 33191837 33191958 -86552940 + MIR SINE MIR 2 136 -126 624 276 126 0 chr13 33192206 33192380 -86552518 - MIR SINE MIR -49 213 18 263 104 21 0 chr13 33192534 33192582 -86552316 + (CA)n Simple_repeat Simple_repeat 1 49 0 2416 62 0 23 chr13 33193346 33193650 -86551248 - AluY SINE Alu -12 299 3 2275 98 0 0 chr13 33193652 33193948 -86550950 - AluSx SINE Alu -16 296 1 346 270 30 0 chr13 33195688 33195788 -86549110 + MER5A DNA MER1_type 4 106 -83 2291 112 0 0 chr13 33196057 33196362 -86548536 + AluSx SINE Alu 1 305 -7 243 221 35 88 chr13 33197175 33197212 -86547686 - MIR SINE MIR -26 236 199 2188 242 25 14 chr13 33197212 33197724 -86547174 + LTR40a LTR ERVL 2 519 0 243 221 35 88 chr13 33197724 33197799 -86547099 - MIR SINE MIR -63 199 130 2364 89 3 0 chr13 33197942 33198244 -86546654 - AluY SINE Alu -8 303 1 233 245 0 0 chr13 33199685 33199738 -86545160 + L2 LINE L2 3257 3309 -4 2885 10 0 0 chr13 33200288 33200598 -86544300 + AluY SINE Alu 1 310 -1 439 243 33 59 chr13 33201200 33201270 -86543628 + MIR SINE MIR 3 73 -189 1866 174 0 10 chr13 33201270 33201568 -86543330 + AluSx SINE Alu 1 295 -17 439 243 33 59 chr13 33201568 33201649 -86543249 + MIR SINE MIR 73 150 -112 379 308 0 0 chr13 33203038 33203171 -86541727 + (TA)n Simple_repeat Simple_repeat 1 133 0 3036 76 0 109 chr13 33204327 33204549 -86540349 + L1PA7 LINE L1 5684 5826 -328 7875 36 6 0 chr13 33204549 33205968 -86538930 + L1PA5 LINE L1 4725 6148 -6 3036 76 0 109 chr13 33205968 33206232 -86538666 + L1PA7 LINE L1 5826 6117 -37 322 299 62 10 chr13 33207598 33207695 -86537203 + MIR SINE MIR 6 107 -155 675 250 13 14 chr13 33207714 33207880 -86537018 + MLT1J2 LTR MaLR 24 218 -270 393 284 134 35 chr13 33208006 33208207 -86536691 + MLT1J2 LTR MaLR 227 447 -3 25 0 0 0 chr13 33208322 33208347 -86536551 + AT_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr13 33208362 33208390 -86536508 + (TC)n Simple_repeat Simple_repeat 1 28 0 306 261 59 34 chr13 33208514 33208633 -86536265 + MIR SINE MIR 71 192 -70 2284 200 37 24 chr13 33209496 33210035 -86534863 + L1MD3 LINE L1 7450 7995 0 63 67 0 0 chr13 33210066 33210185 -86534713 + AT_rich Low_complexity Low_complexity 1 119 0 322 295 92 70 chr13 33211224 33211410 -86533488 + HAL1b LINE L1 59 239 -1109 1887 118 0 11 chr13 33211410 33211681 -86533217 + AluSx SINE Alu 40 307 -5 322 295 92 70 chr13 33211681 33212131 -86532767 + HAL1b LINE L1 239 715 -633 1989 140 27 0 chr13 33212131 33212424 -86532474 + AluSx SINE Alu 1 301 -11 322 295 92 70 chr13 33212424 33212512 -86532386 + HAL1b LINE L1 715 800 -548 1304 233 107 49 chr13 33212701 33213404 -86531494 + L1MC5 LINE L1 6529 7281 -680 538 250 47 8 chr13 33213435 33213563 -86531335 + MLT1D LTR MaLR 1 133 -372 295 217 72 0 chr13 33213563 33213646 -86531252 - L2 LINE L2 -2407 907 819 423 218 0 0 chr13 33213648 33213735 -86531163 + MER105 DNA DNA 2 88 -116 197 331 68 53 chr13 33214364 33214497 -86530401 - L2 LINE L2 -15 3257 3123 250 270 220 0 chr13 33215666 33215766 -86529132 - MIR SINE MIR -85 177 56 27 0 0 0 chr13 33215907 33215934 -86528964 + AT_rich Low_complexity Low_complexity 1 27 0 617 235 99 38 chr13 33216615 33216828 -86528070 + MIR SINE MIR 35 260 -2 312 335 31 43 chr13 33217336 33217497 -86527401 - L2 LINE L2 -9 3263 3105 1763 162 4 0 chr13 33217719 33217990 -86526908 + AluSx SINE Alu 6 277 -35 252 276 143 51 chr13 33218142 33218240 -86526658 + MIR SINE MIR 16 122 -86 210 143 0 0 chr13 33219812 33219847 -86525051 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 285 343 48 113 chr13 33220086 33220485 -86524413 - L2 LINE L2 -6 3266 2894 2110 109 3 3 chr13 33221077 33221397 -86523501 + AluSx SINE Alu 1 320 0 362 252 76 34 chr13 33221939 33222058 -86522840 - MIR SINE MIR -72 190 67 388 289 103 33 chr13 33223821 33224063 -86520835 + LTR33 LTR ERVL 178 436 -85 386 19 0 19 chr13 33224063 33224115 -86520783 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7480 34 0 0 chr13 33224115 33225047 -86519851 - L1PA4 LINE L1 -11 6144 5213 6920 35 6 0 chr13 33225047 33225943 -86518955 + L1P LINE L1 2788 3688 -2458 339 198 12 12 chr13 33225943 33226029 -86518869 + LTR33 LTR ERVL 421 506 -15 235 303 40 10 chr13 33227894 33227993 -86516905 - MIR3 SINE MIR -24 184 83 277 266 14 173 chr13 33228030 33228174 -86516724 + MER5A DNA MER1_type 9 110 -79 2269 102 0 0 chr13 33228174 33228468 -86516430 - AluSg SINE Alu -16 294 1 277 266 14 173 chr13 33228468 33228537 -86516361 + MER5A DNA MER1_type 110 188 -1 1679 192 0 10 chr13 33229055 33229347 -86515551 - AluJo SINE Alu -13 299 11 1509 246 79 78 chr13 33229403 33230116 -86514782 - MER21B LTR ERV1 -125 738 22 351 18 54 0 chr13 33230116 33230172 -86514726 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 222 396 88 11 chr13 33230597 33230688 -86514210 + L2 LINE L2 3147 3244 -28 2452 75 0 3 chr13 33230698 33231003 -86513895 - AluY SINE Alu -7 304 1 24 0 0 0 chr13 33231208 33231232 -86513666 + AT_rich Low_complexity Low_complexity 1 24 0 369 319 28 14 chr13 33231768 33231912 -86512986 - MIR SINE MIR -5 257 112 31 0 0 0 chr13 33232258 33232289 -86512609 + AT_rich Low_complexity Low_complexity 1 31 0 355 246 73 48 chr13 33232317 33232565 -86512333 + L1ME LINE L1 2158 2411 -3985 3109 261 27 37 chr13 33232583 33234555 -86510343 + L1MA6 LINE L1 16 1951 -4098 3983 207 86 7 chr13 33234565 33235774 -86509124 + L1MA6 LINE L1 2440 3743 -2585 684 185 0 0 chr13 33235809 33235928 -86508970 + AluSg/x SINE Alu 183 301 -9 4874 26 2 0 chr13 33236111 33236681 -86508217 - L1PA4 LINE L1 -3 6152 5582 6563 166 37 35 chr13 33236683 33238175 -86506723 + L1MA6 LINE L1 3735 5228 -1100 4110 164 90 18 chr13 33238165 33239129 -86505769 + L1MA6 LINE L1 5449 6482 0 * 1991 276 65 45 chr13 33239227 33240708 -86504190 + L1ME LINE L1 2495 4004 -2211 2336 89 3 6 chr13 33240731 33241045 -86503853 - AluSp SINE Alu 0 313 1 25 0 0 0 chr13 33241101 33241126 -86503772 + AT_rich Low_complexity Low_complexity 1 25 0 239 299 6 19 chr13 33241259 33241416 -86503482 + L1ME LINE L1 4181 4335 -1880 229 100 25 0 chr13 33241418 33241458 -86503440 - MADE1 DNA Mariner -5 75 35 1259 258 80 6 chr13 33241589 33242090 -86502808 + L1ME LINE L1 4875 5412 -803 305 300 11 0 chr13 33242117 33242207 -86502691 - L1MC4 LINE L1 -1339 6703 6613 212 158 0 0 chr13 33242224 33242262 -86502636 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 873 269 26 16 chr13 33242271 33242579 -86502319 + L1ME LINE L1 5464 5774 -457 1376 315 71 41 chr13 33242580 33243628 -86501270 - HERV16 LTR ERVL -1904 3860 2711 1308 317 26 16 chr13 33243694 33244311 -86500587 - HERV16 LTR ERVL -2588 2408 1914 2011 164 45 32 chr13 33244364 33244871 -86500027 + MLT2A2 LTR ERVL 1 520 0 1912 310 71 13 chr13 33244871 33246009 -86498889 - HERV16 LTR ERVL -3124 1872 604 425 355 47 14 chr13 33246268 33246564 -86498334 - HERV16 LTR ERVL -4676 320 15 752 316 33 28 chr13 33246566 33246961 -86497937 - LTR16B LTR ERVL -2 462 66 1866 136 23 0 chr13 33249675 33249977 -86494921 - MER7A DNA MER2_type 0 346 40 526 286 79 31 chr13 33251450 33251677 -86493221 + MIR SINE MIR 20 257 -5 321 68 0 0 chr13 33252925 33252969 -86491929 + (TG)n Simple_repeat Simple_repeat 1 44 0 2132 138 0 0 chr13 33254115 33254426 -86490472 + AluSx SINE Alu 1 311 -1 221 196 18 0 chr13 33254454 33254510 -86490388 + (TA)n Simple_repeat Simple_repeat 1 57 0 1978 205 94 14 chr13 33254716 33255218 -86489680 - MLT1F LTR MaLR 0 542 1 192 111 0 0 chr13 33255292 33255328 -86489570 + (A)n Simple_repeat Simple_repeat 1 36 0 1448 143 9 5 chr13 33258096 33258319 -86486579 + AluSx SINE Alu 1 224 -88 180 0 0 0 chr13 33258330 33258350 -86486548 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1090 207 132 35 chr13 33258355 33258756 -86486142 - MLT1C LTR MaLR -27 440 1 995 200 45 76 chr13 33259058 33259582 -86485316 + MER34B LTR ERV1 4 585 0 287 273 172 50 chr13 33260301 33260499 -86484399 + MIR SINE MIR 3 224 -38 182 273 55 82 chr13 33260553 33260663 -86484235 - MIR SINE MIR -147 115 9 209 327 77 39 chr13 33260999 33261103 -86483795 - L2 LINE L2 -32 3240 3133 778 213 24 0 chr13 33261424 33261588 -86483310 - MER5A DNA MER1_type -5 184 17 1767 130 70 12 chr13 33261588 33261918 -86482980 - THE1C LTR MaLR 0 375 27 1315 187 101 1 chr13 33264445 33264796 -86480102 - MLT2C2 LTR ERVL 0 397 3 2070 113 7 29 chr13 33264823 33265133 -86479765 + AluSq SINE Alu 11 313 0 21 36 0 0 chr13 33265334 33265362 -86479536 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 33265406 33265432 -86479466 + AT_rich Low_complexity Low_complexity 1 26 0 627 278 46 85 chr13 33265447 33266012 -86478886 + L1ME LINE L1 13 555 -5515 1793 215 61 8 chr13 33266486 33266960 -86477938 - Charlie1b DNA MER1_type -1 522 24 560 329 82 16 chr13 33267110 33267426 -86477472 - ERVL LTR ERVL -1914 3850 3514 438 324 42 14 chr13 33267509 33267725 -86477173 - ERVL LTR ERVL -2375 3389 3168 312 333 33 18 chr13 33267766 33267979 -86476919 - ERVL LTR ERVL -1981 3015 2788 362 235 42 48 chr13 33267979 33268134 -86476764 - MLT1F LTR MaLR 0 555 388 238 329 27 67 chr13 33268264 33268337 -86476561 - MLT1F LTR MaLR -362 228 162 2854 82 0 6 chr13 33268337 33268703 -86476195 + THE1B LTR MaLR 1 364 0 238 329 27 67 chr13 33268703 33268778 -86476120 - MLT1F LTR MaLR -428 162 86 410 325 21 16 chr13 33269269 33269463 -86475435 - ERVL LTR ERVL -3427 2337 2143 440 207 33 50 chr13 33269520 33269641 -86475257 - MLT1F LTR MaLR -8 534 416 232 284 23 0 chr13 33271216 33271304 -86473594 + (TA)n Simple_repeat Simple_repeat 2 91 0 736 246 77 40 chr13 33272768 33273016 -86471882 - MIR SINE MIR 0 262 6 38 22 0 0 chr13 33273399 33273444 -86471454 + AT_rich Low_complexity Low_complexity 1 45 0 216 0 0 0 chr13 33276090 33276114 -86468784 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1248 237 58 40 chr13 33276336 33276783 -86468115 - MLT1C LTR MaLR -7 460 6 2725 217 103 23 chr13 33276950 33276991 -86467907 - MER21B LTR ERV1 -15 848 812 2271 82 11 61 chr13 33276991 33277368 -86467530 - L1PB2 LINE L1 0 6151 5794 2725 217 103 23 chr13 33277368 33278096 -86466802 - MER21B LTR ERV1 -51 812 18 410 224 0 0 chr13 33278120 33278196 -86466702 - MER21B LTR ERV1 -776 87 12 527 321 75 25 chr13 33278392 33278672 -86466226 + HAL1 LINE L1 1134 1427 -1080 354 104 15 0 chr13 33278678 33278729 -86466169 + L1PA4 LINE L1 5983 6037 -118 428 105 0 105 chr13 33278729 33278824 -86466074 + L1PA10 LINE L1 6084 6168 0 354 104 15 0 chr13 33278824 33278839 -86466059 + L1PA4 LINE L1 6037 6050 -105 1175 234 127 15 chr13 33278966 33279487 -86465411 + MER114 LTR ERV 70 648 0 22 56 0 0 chr13 33279926 33279962 -86464936 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr13 33279980 33280003 -86464895 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 1724 195 0 16 chr13 33280003 33280311 -86464587 + AluJo SINE Alu 4 306 -6 1803 166 43 10 chr13 33284251 33284616 -86460282 + AluSx SINE Alu 1 375 0 327 236 22 22 chr13 33285438 33285527 -86459371 - MIR SINE MIR -117 145 57 508 315 76 0 chr13 33286451 33286635 -86458263 - MIR SINE MIR -8 254 57 847 255 172 45 chr13 33287595 33287991 -86456907 - L2 LINE L2 0 3313 2868 523 280 46 6 chr13 33288668 33288843 -86456055 + MIR SINE MIR 81 262 0 195 352 130 9 chr13 33288938 33289046 -86455852 - L2 LINE L2 -5 3267 3147 303 294 39 0 chr13 33289615 33289717 -86455181 - MLT1H LTR MaLR 0 549 444 384 240 157 30 chr13 33290418 33290605 -86454293 - MIR SINE MIR 0 262 59 2128 117 3 23 chr13 33291477 33291786 -86453112 + AluSg SINE Alu 1 303 -7 2225 76 10 10 chr13 33292647 33292938 -86451960 - AluY SINE Alu -20 291 1 182 233 0 67 chr13 33292982 33293042 -86451856 + L3 LINE CR1 1377 1432 -145 584 188 8 0 chr13 33293227 33293355 -86451543 + L1MB3 LINE L1 4992 5120 -1026 1041 144 26 0 chr13 33293376 33293570 -86451328 + L1MB3 LINE L1 5949 6147 -36 4415 177 14 13 chr13 33293625 33293867 -86451031 + L1MB3 LINE L1 5173 5413 -770 1856 115 118 38 chr13 33293867 33294214 -86450684 + THE1C LTR MaLR 1 375 0 4415 177 14 13 chr13 33294214 33294981 -86449917 + L1MB3 LINE L1 5413 6183 0 2122 152 0 0 chr13 33295046 33295349 -86449549 + AluSx SINE Alu 1 303 -9 1401 220 90 48 chr13 33295755 33296293 -86448605 + MLT1F1 LTR MaLR 1 567 0 727 263 157 27 chr13 33298433 33298764 -86446134 + L2 LINE L2 2940 3313 0 298 252 79 24 chr13 33299601 33299728 -86445170 + LTR16A1 LTR ERVL 321 454 -3 241 233 11 22 chr13 33299761 33299851 -86445047 + A-rich Low_complexity Low_complexity 3 91 0 1774 191 7 3 chr13 33300822 33301259 -86443639 + AluSx SINE Alu 1 438 0 1772 185 60 32 chr13 33303264 33303798 -86441100 + MLT2A2 LTR ERVL 1 554 0 427 175 62 21 chr13 33304142 33304239 -86440659 - L2 LINE L2 -4 3268 3168 1659 166 10 28 chr13 33305621 33305911 -86438987 + AluJb SINE Alu 16 300 -12 467 318 45 0 chr13 33306154 33306286 -86438612 - L2 LINE L2 0 3313 3176 404 256 103 0 chr13 33306302 33306419 -86438479 - MIR SINE MIR -45 217 89 251 299 0 15 chr13 33307800 33307867 -86437031 + MIR SINE MIR 32 97 -111 758 268 59 35 chr13 33308069 33308408 -86436490 + MLT1I LTR MaLR 63 409 0 186 324 75 104 chr13 33308836 33309250 -86435648 - L2 LINE L2 -38 3234 2833 1685 150 49 36 chr13 33309522 33309828 -86435070 + AluSg SINE Alu 1 310 0 1548 175 43 15 chr13 33310277 33310603 -86434295 - MER2 DNA MER2_type -9 336 2 2183 86 0 67 chr13 33310776 33311091 -86433807 - AluY SINE Alu -17 294 1 226 337 20 0 chr13 33311108 33311206 -86433692 + HAL1b LINE L1 798 897 -451 3528 56 11 0 chr13 33312863 33313313 -86431585 - L1PA7 LINE L1 0 6154 5700 244 341 69 81 chr13 33313547 33313808 -86431090 + L2 LINE L2 3008 3265 -7 195 301 36 24 chr13 33313810 33313893 -86431005 - MIR SINE MIR -67 141 58 543 191 80 19 chr13 33314122 33314284 -86430614 + MER53 DNA DNA 18 189 0 244 309 164 32 chr13 33314787 33315007 -86429891 + MIR SINE MIR 7 255 -7 288 0 0 0 chr13 33315566 33315598 -86429300 + (CA)n Simple_repeat Simple_repeat 1 32 0 447 251 57 43 chr13 33315717 33315928 -86428970 - L1MC/D LINE L1 -1992 5816 5603 280 248 168 0 chr13 33315936 33316037 -86428861 + MER69A DNA AcHobo 8 125 -52 880 249 169 26 chr13 33316436 33317007 -86427891 - L2 LINE L2 -1 3312 2662 39813 37 1 40 chr13 33317917 33324334 -86420564 - L1HS LINE L1 0 6155 1 282 56 0 0 chr13 33325216 33325252 -86419646 + (CA)n Simple_repeat Simple_repeat 2 37 0 2220 113 3 0 chr13 33326344 33326637 -86418261 + AluSx SINE Alu 1 294 -18 398 248 73 29 chr13 33326641 33326778 -86418120 - MIR SINE MIR -1 261 119 331 361 49 0 chr13 33326878 33327000 -86417898 - L2 LINE L2 -1 3271 3144 3428 206 6 57 chr13 33327356 33327749 -86417149 - L1MB5 LINE L1 -14 6160 5749 1984 115 0 11 chr13 33327749 33328018 -86416880 - AluSx SINE Alu -30 282 17 3428 206 6 57 chr13 33328018 33328508 -86416390 - L1MB5 LINE L1 -425 5749 5322 432 200 24 0 chr13 33329265 33329390 -86415508 + (TA)n Simple_repeat Simple_repeat 2 129 0 329 297 27 70 chr13 33330635 33330820 -86414078 + L1ME4a LINE L1 5295 5471 -2337 387 270 114 44 chr13 33330852 33330995 -86413903 + L1ME4a LINE L1 5534 5665 -456 2093 154 0 0 chr13 33330995 33331306 -86413592 + AluSx SINE Alu 1 311 -1 387 270 114 44 chr13 33331306 33331529 -86413369 + L1ME4a LINE L1 5665 5926 -195 22 0 0 0 chr13 33331579 33331601 -86413297 + AT_rich Low_complexity Low_complexity 1 22 0 253 278 87 23 chr13 33331801 33331974 -86412924 - MLT1K LTR MaLR -39 549 366 547 181 19 0 chr13 33332295 33332400 -86412498 + AluJo SINE Alu 1 107 -205 29458 55 4 1 chr13 33332400 33337143 -86407755 + L1PA5 LINE L1 1398 6153 -1 2070 133 10 10 chr13 33337155 33337457 -86407441 + AluSq SINE Alu 1 302 -11 396 247 155 26 chr13 33337669 33337863 -86407035 - MIR SINE MIR -24 238 20 1008 55 29 36 chr13 33338254 33338563 -86406335 + (GAAA)n Simple_repeat Simple_repeat 1 307 0 629 162 12 126 chr13 33338571 33338738 -86406160 + AluJo SINE Alu 106 253 -59 189 121 0 0 chr13 33339132 33339165 -86405733 + (GA)n Simple_repeat Simple_repeat 2 34 0 297 276 67 0 chr13 33341540 33341645 -86403253 - MIR3 SINE MIR -4 204 93 33 0 0 0 chr13 33342967 33343000 -86401898 + AT_rich Low_complexity Low_complexity 1 33 0 1984 172 3 0 chr13 33343894 33344338 -86400560 + AluSx SINE Alu 1 445 0 13888 75 3 10 chr13 33344482 33346537 -86398361 + L1P LINE L1 802 2841 -3305 215 318 173 9 chr13 33347003 33347113 -86397785 + L2 LINE L2 3186 3313 0 2323 103 0 6 chr13 33347190 33347502 -86397396 - AluSg SINE Alu 0 310 1 513 44 0 0 chr13 33348874 33348942 -86395956 + (TCTCCC)n Simple_repeat Simple_repeat 5 72 0 3940 153 26 6 chr13 33349921 33350158 -86394740 - Tigger1 DNA MER2_type 0 2418 2187 180 0 0 0 chr13 33350158 33350178 -86394720 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3940 153 26 6 chr13 33350178 33350254 -86394644 - Tigger1 DNA MER2_type -231 2187 2114 2452 77 0 13 chr13 33350254 33350567 -86394331 - AluY SINE Alu -2 309 1 3940 153 26 6 chr13 33350567 33350970 -86393928 - Tigger1 DNA MER2_type -304 2114 1686 5416 162 30 2 chr13 33350973 33351950 -86392948 - Tigger1 DNA MER2_type -1410 1008 5 479 266 31 8 chr13 33351980 33352108 -86392790 + L2 LINE L2 3134 3264 -8 213 94 0 0 chr13 33352135 33352167 -86392731 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1575 258 52 22 chr13 33352436 33352952 -86391946 + MER74B LTR ERVL 1 535 -87 1427 193 23 49 chr13 33352952 33353257 -86391641 - AluJb SINE Alu -5 297 1 1575 258 52 22 chr13 33353257 33353278 -86391620 + MER74B LTR ERVL 535 554 -68 433 229 85 25 chr13 33353401 33353519 -86391379 + L2 LINE L2 3189 3313 0 255 294 69 20 chr13 33353558 33353660 -86391238 + L2 LINE L2 3152 3258 -14 205 324 29 44 chr13 33353814 33353950 -86390948 + MIR3 SINE MIR 15 148 -60 320 289 102 8 chr13 33354417 33354545 -86390353 - MIR SINE MIR -121 141 2 328 263 32 11 chr13 33356301 33356396 -86388502 + L2 LINE L2 2685 2781 -533 1118 297 96 8 chr13 33356486 33356970 -86387928 + L2 LINE L2 2782 3313 0 1970 121 65 39 chr13 33356993 33357348 -86387550 - THE1B LTR MaLR 0 364 1 242 347 31 20 chr13 33357891 33357989 -86386909 - MER91A DNA MER1_type 0 196 98 252 321 113 19 chr13 33358311 33358417 -86386481 + MIR SINE MIR 32 147 -61 516 125 0 0 chr13 33358705 33358785 -86386113 - MADE1 DNA Mariner 0 80 1 603 266 117 37 chr13 33358815 33359217 -86385681 - L1MEc LINE L1 -3939 2457 2024 447 279 55 30 chr13 33359454 33359655 -86385243 - L1MEc LINE L1 -5853 352 147 291 265 15 0 chr13 33359920 33359988 -86384910 + L2 LINE L2 3204 3272 0 248 342 0 0 chr13 33360140 33360219 -86384679 - MIR SINE MIR -16 246 168 219 333 21 21 chr13 33360768 33360861 -86384037 - L3 LINE CR1 -1415 162 70 437 195 0 0 chr13 33360946 33361028 -86383870 - AluJo SINE Alu -5 307 226 * 686 169 0 2 chr13 33361024 33361178 -86383720 - AluJo SINE Alu -126 186 1 316 308 42 17 chr13 33361316 33361436 -86383462 - L2 LINE L2 -1 3312 3190 316 244 44 22 chr13 33362024 33362114 -86382784 - L2 LINE L2 0 3313 3222 361 286 8 17 chr13 33363971 33364090 -86380808 - L2 LINE L2 -5 3308 3191 371 187 11 11 chr13 33364204 33364295 -86380603 - L1PA16 LINE L1 0 6166 6076 33 0 0 0 chr13 33364378 33364411 -86380487 + AT_rich Low_complexity Low_complexity 1 33 0 1483 148 29 0 chr13 33364793 33365070 -86379828 + L1MA8 LINE L1 6004 6288 -3 217 354 63 25 chr13 33365437 33365516 -86379382 + L3b LINE CR1 1490 1571 -12 868 236 85 69 chr13 33366481 33366845 -86378053 - MLT1A2 LTR MaLR -4 370 1 314 303 9 0 chr13 33367470 33367579 -86377319 - MER103 DNA DNA -49 117 8 293 241 65 15 chr13 33367600 33367740 -86377158 + MLT1J2 LTR MaLR 1 146 -263 456 212 51 6 chr13 33367825 33367992 -86376906 + MLT1J2 LTR MaLR 274 405 -4 756 225 70 20 chr13 33368090 33368290 -86376608 - MER58A DNA MER1_type -13 211 2 1123 220 79 7 chr13 33370157 33370434 -86374464 - MER33 DNA MER1_type 0 324 28 398 227 34 0 chr13 33370484 33370572 -86374326 - MIR SINE MIR -90 172 82 4122 96 2 5 chr13 33370617 33370755 -86374143 - L1PA12 LINE L1 -2 6166 6029 2762 91 11 0 chr13 33370755 33371106 -86373792 + THE1A LTR MaLR 1 355 0 12421 88 15 2 chr13 33371106 33372665 -86372233 + THE1A-int LTR MaLR 1 1580 0 3032 68 3 0 chr13 33372667 33373019 -86371879 + THE1A LTR MaLR 3 355 0 4122 96 2 5 chr13 33373019 33373429 -86371469 - L1PA12 LINE L1 -139 6029 5616 317 306 198 51 chr13 33373554 33373927 -86370971 - L3 LINE CR1 -363 1214 787 2029 123 3 27 chr13 33374092 33374392 -86370506 + AluSx SINE Alu 1 293 -19 754 314 96 17 chr13 33374442 33374795 -86370103 + MLT1I LTR MaLR 3 383 -26 1537 171 62 14 chr13 33377037 33377312 -86367586 - AluJo SINE Alu -20 292 5 419 276 0 35 chr13 33378558 33378674 -86366224 + MER81 DNA DNA 1 112 -2 186 319 15 74 chr13 33378677 33378812 -86366086 + MIR SINE MIR 14 140 -122 498 281 8 0 chr13 33378985 33379113 -86365785 + MER94 DNA DNA 1 129 -5 2221 99 0 23 chr13 33379372 33379674 -86365224 + AluY SINE Alu 1 295 -16 427 53 0 18 chr13 33379805 33379862 -86365036 - MADE1 DNA Mariner 0 80 25 2007 98 0 0 chr13 33379864 33380118 -86364780 + AluSx SINE Alu 3 256 -56 3842 75 18 77 chr13 33380764 33381492 -86363406 + SVA Other Other 439 1123 -263 582 311 19 19 chr13 33382257 33382466 -86362432 - MIR SINE MIR -41 221 13 1188 127 0 0 chr13 33382834 33383007 -86361891 - L1MA6 LINE L1 0 6300 6128 3796 152 57 32 chr13 33383007 33383196 -86361702 + Tigger3(Golem) DNA MER2_type 2 185 -2843 2254 110 0 0 chr13 33383196 33383495 -86361403 + AluSx SINE Alu 1 299 -13 3796 152 57 32 chr13 33383495 33384136 -86360762 + Tigger3(Golem) DNA MER2_type 185 3028 0 4799 166 5 14 chr13 33384136 33385393 -86359505 - L1MA6 LINE L1 -170 6130 4883 267 186 0 0 chr13 33386986 33387029 -86357869 + MLT1D LTR MaLR 1 43 -462 2185 81 0 0 chr13 33387030 33387291 -86357607 + AluSg SINE Alu 1 261 -49 1029 158 0 23 chr13 33387323 33387500 -86357398 + MLT1D LTR MaLR 333 505 0 262 282 120 43 chr13 33388889 33389006 -86355892 + MIR SINE MIR 25 150 -112 474 241 97 7 chr13 33389940 33390085 -86354813 + LTR16A LTR ERVL 293 450 0 776 320 61 28 chr13 33390097 33390556 -86354342 - MARNA DNA Mariner -93 493 20 223 330 68 0 chr13 33390748 33390836 -86354062 + L2 LINE L2 3171 3264 -8 189 0 0 0 chr13 33390902 33390923 -86353975 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2702 165 19 2 chr13 33391433 33391852 -86353046 - MSTB LTR MaLR 0 426 1 4565 37 6 0 chr13 33392295 33392814 -86352084 + L1PA4 LINE L1 5634 6155 0 262 357 62 40 chr13 33393816 33394040 -86350858 - MIR SINE MIR -14 248 20 505 281 107 29 chr13 33394357 33394657 -86350241 + L1ME4a LINE L1 5309 5631 -490 318 319 42 25 chr13 33394658 33394899 -86349999 + L1ME4a LINE L1 5682 5926 -195 415 365 115 21 chr13 33395327 33395710 -86349188 - L2 LINE L2 -16 3256 2838 254 342 49 49 chr13 33395946 33396189 -86348709 - L2 LINE L2 -479 2835 2593 216 372 102 14 chr13 33396417 33396788 -86348110 - L2 LINE L2 -1003 2311 1908 188 271 94 0 chr13 33400427 33400512 -86344386 - MIR SINE MIR -8 254 162 1282 234 58 58 chr13 33401500 33401949 -86342949 + MLT1D LTR MaLR 5 453 -52 206 121 0 0 chr13 33403356 33403389 -86341509 + (A)n Simple_repeat Simple_repeat 1 33 0 8727 162 15 12 chr13 33403391 33405893 -86339005 + L1PB1 LINE L1 3644 6149 -2 5312 156 16 49 chr13 33406191 33407243 -86337655 + L1PB4 LINE L1 4782 5867 -289 327 49 0 0 chr13 33407243 33407284 -86337614 + (CA)n Simple_repeat Simple_repeat 2 42 0 2148 221 6 30 chr13 33407284 33407751 -86337147 + LTR22A LTR ERVK 3 458 0 5312 156 16 49 chr13 33407751 33408104 -86336794 + L1PB4 LINE L1 5865 6145 -11 6871 129 17 13 chr13 33408280 33409891 -86335007 + L1MA2 LINE L1 4677 6297 -7 2424 70 3 0 chr13 33409891 33410189 -86334709 - AluY SINE Alu -12 299 1 26 30 0 0 chr13 33410189 33410222 -86334676 + AT_rich Low_complexity Low_complexity 1 33 0 452 231 163 7 chr13 33412868 33413015 -86331883 - MIR SINE MIR -14 248 79 216 67 0 0 chr13 33413062 33413092 -86331806 + (TC)n Simple_repeat Simple_repeat 1 30 0 1098 178 20 15 chr13 33413108 33413305 -86331593 + MER3 DNA MER1_type 2 199 -10 273 239 0 14 chr13 33413373 33413444 -86331454 - MIR SINE MIR -71 191 122 1263 152 17 46 chr13 33413456 33413693 -86331205 + MSTB1 LTR MaLR 1 230 -202 1086 145 17 0 chr13 33414555 33414727 -86330171 + MSTB1 LTR MaLR 256 430 -2 316 260 94 10 chr13 33414868 33414964 -86329934 + L2 LINE L2 3210 3313 0 281 351 264 5 chr13 33414992 33415200 -86329698 + L3b LINE CR1 1269 1530 -53 310 279 90 0 chr13 33415979 33416101 -86328797 - LTR33A LTR ERVL 0 523 391 500 306 77 25 chr13 33416203 33416438 -86328460 - LTR33A LTR ERVL -276 247 1 190 246 115 0 chr13 33416577 33416638 -86328260 + L2 LINE L2 3205 3272 0 1678 167 0 46 chr13 33416826 33417149 -86327749 + AluJo SINE Alu 1 308 -4 2185 102 6 37 chr13 33417487 33417809 -86327089 + AluSx SINE Alu 1 312 0 254 264 0 0 chr13 33418115 33418187 -86326711 + L1MC/D LINE L1 5680 5751 -2057 276 354 10 10 chr13 33418860 33418956 -86325942 + L2 LINE L2 3177 3272 0 2325 170 39 30 chr13 33419144 33419604 -86325294 + MLT1C LTR MaLR 1 464 -3 255 333 67 11 chr13 33420167 33420257 -86324641 - L2 LINE L2 -25 3247 3153 29 78 0 0 chr13 33422270 33422334 -86322564 + AT_rich Low_complexity Low_complexity 1 64 0 224 368 36 36 chr13 33422618 33422631 -86322267 - L2 LINE L2 0 3272 3260 207 0 0 0 chr13 33422631 33422654 -86322244 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 224 368 36 36 chr13 33422654 33422806 -86322092 - L2 LINE L2 -11 3261 3107 21 36 0 0 chr13 33423435 33423463 -86321435 + AT_rich Low_complexity Low_complexity 1 28 0 222 262 177 28 chr13 33424338 33424479 -86320419 + L2 LINE L2 3144 3305 -8 2326 96 0 3 chr13 33425359 33425660 -86319238 + AluSg SINE Alu 2 301 -9 1353 53 12 16 chr13 33425714 33425963 -86318935 + (GAAA)n Simple_repeat Simple_repeat 4 249 0 2861 224 25 5 chr13 33426337 33426976 -86317922 + MER82 DNA MER2_type 1 652 -1 25 0 0 0 chr13 33427606 33427631 -86317267 + AT_rich Low_complexity Low_complexity 1 25 0 206 247 156 0 chr13 33429222 33429299 -86315599 + L2 LINE L2 2305 2393 -921 278 138 17 0 chr13 33429446 33429504 -86315394 + GA-rich Low_complexity Low_complexity 4 62 0 223 277 24 72 chr13 33429817 33429900 -86314998 + MIR SINE MIR 109 187 -75 1222 258 105 46 chr13 33430075 33430811 -86314087 + L2 LINE L2 2527 3313 0 1709 173 23 13 chr13 33431261 33431562 -86313336 - AluJo SINE Alu -8 304 1 22 56 0 0 chr13 33431630 33431666 -86313232 + AT_rich Low_complexity Low_complexity 1 36 0 270 229 24 0 chr13 33432212 33432295 -86312603 + L1ME LINE L1 5670 5754 -408 608 304 23 37 chr13 33433431 33433645 -86311253 + MIR SINE MIR 52 262 0 211 229 0 0 chr13 33433645 33433693 -86311205 + (TTA)n Simple_repeat Simple_repeat 2 49 0 338 292 92 0 chr13 33433897 33434017 -86310881 - MIR SINE MIR -1 261 131 2338 123 83 5 chr13 33434143 33434540 -86310358 + MSTA LTR MaLR 1 428 0 665 147 0 9 chr13 33435069 33435178 -86309720 + AluSq/x SINE Alu 1 108 -205 364 313 79 0 chr13 33435680 33435889 -86309009 + L1ME LINE L1 5592 5818 -303 195 227 0 0 chr13 33436005 33436049 -86308849 + L2 LINE L2 3021 3064 -208 195 222 62 74 chr13 33436192 33436273 -86308625 + MIR SINE MIR 183 262 0 1973 134 13 19 chr13 33436573 33436887 -86308011 + AluSx SINE Alu 1 312 0 1400 234 103 39 chr13 33438777 33439261 -86305637 - MLT1F LTR MaLR -19 523 9 1081 204 44 87 chr13 33439354 33439700 -86305198 + MER39 LTR ERV1 68 589 -118 2051 119 25 0 chr13 33439700 33439986 -86304912 + AluSp SINE Alu 1 293 -20 1081 204 44 87 chr13 33439986 33440062 -86304836 + MER39 LTR ERV1 589 667 -40 1419 196 122 9 chr13 33440174 33440321 -86304577 + MLT1A2 LTR MaLR 1 130 -244 252 0 0 0 chr13 33440321 33440349 -86304549 + (TC)n Simple_repeat Simple_repeat 1 28 0 1419 196 122 9 chr13 33440349 33440537 -86304361 + MLT1A2 LTR MaLR 130 374 0 207 264 0 19 chr13 33440798 33440851 -86304047 + GA-rich Low_complexity Low_complexity 128 179 0 2468 201 52 89 chr13 33441602 33442486 -86302412 + MER69 DNA AcHobo 1451 2287 -239 2144 104 7 20 chr13 33442486 33442785 -86302113 - AluSg SINE Alu -15 295 1 2468 201 52 89 chr13 33442785 33443017 -86301881 + MER69 DNA AcHobo 2287 2526 0 230 255 176 0 chr13 33443053 33443155 -86301743 - L2 LINE L2 -1262 2052 1933 238 0 0 0 chr13 33443187 33443215 -86301683 + THE1C LTR MaLR 1 28 -347 320 296 18 11 chr13 33445343 33445480 -86299418 - MLT1H1 LTR MaLR -2 565 429 710 291 54 22 chr13 33445776 33446381 -86298517 - L1ME LINE L1 -415 5681 5056 572 263 78 61 chr13 33446432 33447092 -86297806 - L1ME LINE L1 -4748 1513 807 189 368 23 0 chr13 33448012 33448099 -86296799 - L2 LINE L2 -962 2352 2264 423 183 0 0 chr13 33448376 33448458 -86296440 + (TG)n Simple_repeat Simple_repeat 1 82 0 345 275 183 0 chr13 33448648 33448779 -86296119 - MIR3 SINE MIR -12 196 42 240 333 36 29 chr13 33449468 33449606 -86295292 + MIR3 SINE MIR 7 145 -63 1455 214 43 6 chr13 33449616 33449967 -86294931 + MLT1B LTR MaLR 8 371 -19 24 0 0 0 chr13 33451094 33451118 -86293780 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 33452090 33452113 -86292785 + AT_rich Low_complexity Low_complexity 1 23 0 4336 82 2 36 chr13 33452117 33452760 -86292138 - L1PB1 LINE L1 -6 6145 5525 406 306 132 4 chr13 33453232 33453467 -86291431 - L1ME LINE L1 -299 5822 5558 860 268 121 14 chr13 33454036 33454391 -86290507 - LTR16C LTR ERVL 0 491 99 352 287 33 8 chr13 33456768 33456890 -86288008 + L1ME LINE L1 5588 5712 -409 232 178 100 56 chr13 33457408 33457498 -86287400 - Charlie4 DNA MER1_type -587 1374 1281 3618 111 7 16 chr13 33457802 33458286 -86286612 + MER41A LTR ERV1 3 483 -71 2257 102 0 3 chr13 33458286 33458591 -86286307 - AluSq SINE Alu -9 304 1 3618 111 7 16 chr13 33458591 33458663 -86286235 + MER41A LTR ERV1 483 554 0 2132 123 0 49 chr13 33459130 33459456 -86285442 - AluSg SINE Alu 0 310 1 204 125 0 0 chr13 33461086 33461118 -86283780 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2004 212 114 19 chr13 33461810 33461985 -86282913 + L1MC4a LINE L1 7166 7323 -485 1723 115 17 0 chr13 33461985 33462247 -86282651 + AluSx SINE Alu 47 312 0 2004 212 114 19 chr13 33462247 33462655 -86282243 + L1MC4a LINE L1 7323 7806 -2 281 227 176 42 chr13 33464954 33465073 -86279825 - MIR3 SINE MIR -64 144 10 4210 80 2 0 chr13 33465239 33465792 -86279106 - MER41A LTR ERV1 0 554 1 1988 147 24 37 chr13 33466329 33466709 -86278189 - THE1C LTR MaLR 0 375 1 363 179 60 40 chr13 33467167 33467388 -86277510 - MER34B LTR ERV1 -5 537 355 2839 122 7 91 chr13 33467551 33468167 -86276731 + MER4B LTR ERV1 1 564 -46 368 169 22 45 chr13 33468301 33468390 -86276508 - MER34C LTR ERV1 -459 126 40 3425 169 49 25 chr13 33468591 33469301 -86275597 + LTR8A LTR ERV1 1 727 0 311 350 10 0 chr13 33470150 33470247 -86274651 + MIR3 SINE MIR 110 207 -1 234 257 29 100 chr13 33471501 33471641 -86273257 - L2 LINE L2 -202 3070 2941 304 333 79 8 chr13 33472195 33472321 -86272577 - L2 LINE L2 -196 3076 2942 628 225 7 20 chr13 33472350 33472501 -86272397 + MER3 DNA MER1_type 5 153 -56 2570 189 13 25 chr13 33472505 33473062 -86271836 - MER89 LTR ERV1 0 559 10 182 257 156 18 chr13 33474435 33474544 -86270354 + L2 LINE L2 3186 3309 -4 23 0 0 0 chr13 33474547 33474570 -86270328 + AT_rich Low_complexity Low_complexity 1 23 0 214 376 9 46 chr13 33474629 33474738 -86270160 - L2 LINE L2 0 3272 3168 1107 160 0 0 chr13 33474892 33475061 -86269837 + AluSg/x SINE Alu 134 302 -10 288 0 0 0 chr13 33477511 33477543 -86267355 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 426 20 0 0 chr13 33477542 33477593 -86267305 + (TG)n Simple_repeat Simple_repeat 2 52 0 546 223 8 0 chr13 33479263 33479384 -86265514 - MER94 DNA DNA -12 122 1 225 296 0 51 chr13 33479764 33479862 -86265036 - L2 LINE L2 -1 3312 3220 290 136 198 12 chr13 33479964 33480045 -86264853 - MLT1J LTR MaLR -2 509 414 1022 179 0 6 chr13 33480050 33480223 -86264675 + FAM SINE Alu 1 172 -3 798 251 54 133 chr13 33480272 33480754 -86264144 - MLT1J LTR MaLR -67 444 1 234 326 52 36 chr13 33481275 33481468 -86263430 - L2 LINE L2 -411 2903 2708 1963 157 13 0 chr13 33481471 33481776 -86263122 + AluSx SINE Alu 4 312 0 244 213 16 33 chr13 33482184 33482245 -86262653 + GA-rich Low_complexity Low_complexity 1 60 0 2076 141 13 7 chr13 33482261 33482567 -86262331 - AluSx SINE Alu -4 308 1 50 0 0 0 chr13 33482589 33482639 -86262259 + AT_rich Low_complexity Low_complexity 1 50 0 862 295 150 62 chr13 33482721 33483808 -86261090 - L2 LINE L2 0 3313 2126 389 275 55 44 chr13 33483876 33484058 -86260840 + MER69 DNA AcHobo 216 399 -827 2549 197 52 89 chr13 33485018 33485902 -86258996 + MER69 DNA AcHobo 1451 2286 -240 2088 117 7 13 chr13 33485902 33486200 -86258698 - AluY SINE Alu -15 296 1 2549 197 52 89 chr13 33486200 33486433 -86258465 + MER69 DNA AcHobo 2286 2526 0 544 252 80 58 chr13 33486469 33486606 -86258292 - L2 LINE L2 -1262 2052 1920 2125 139 46 0 chr13 33486606 33486952 -86257946 + THE1B LTR MaLR 1 362 -2 10619 98 16 58 chr13 33486955 33488602 -86256296 + THE1B-int LTR MaLR 2 1580 0 2219 152 22 0 chr13 33488602 33488958 -86255940 + THE1B LTR MaLR 1 364 0 544 252 80 58 chr13 33488958 33489041 -86255857 - L2 LINE L2 -1394 1920 1822 573 261 90 36 chr13 33489088 33489487 -86255411 + LTR33 LTR ERVL 45 521 0 183 80 0 0 chr13 33490259 33490284 -86254614 + (A)n Simple_repeat Simple_repeat 1 25 0 470 305 67 14 chr13 33490469 33490692 -86254206 + L2 LINE L2 2827 3061 -211 223 240 120 13 chr13 33490827 33490902 -86253996 + L2 LINE L2 3190 3272 0 192 341 24 24 chr13 33491340 33491422 -86253476 + MIR3 SINE MIR 2 83 -125 580 265 0 0 chr13 33491433 33491569 -86253329 + MIR SINE MIR 65 200 -62 282 352 113 7 chr13 33491601 33491743 -86253155 - MIR3 SINE MIR -34 174 18 2350 63 6 54 chr13 33493010 33493327 -86251571 - AluY SINE Alu -9 302 1 447 290 168 0 chr13 33493687 33493842 -86251056 + MER5A DNA MER1_type 9 189 0 413 253 137 60 chr13 33493968 33494150 -86250748 - MIR SINE MIR -66 196 1 1434 293 74 25 chr13 33495127 33495759 -86249139 - MLT2F LTR ERVL 0 663 1 251 255 92 0 chr13 33495942 33496040 -86248858 - MER103 DNA DNA -59 107 1 1656 197 79 6 chr13 33496170 33496510 -86248388 - MLT1A1 LTR MaLR 0 365 1 1264 240 41 43 chr13 33497974 33498412 -86246486 + LTR16A1 LTR ERVL 7 443 -14 770 258 12 8 chr13 33498503 33498755 -86246143 + L1M4 LINE L1 4795 5047 -1099 458 141 141 0 chr13 33498960 33499059 -86245839 + L1ME LINE L1 4839 4951 -1195 299 250 0 0 chr13 33499059 33499127 -86245771 + Tigger5 DNA MER2_type 2255 2322 -1 1162 268 65 6 chr13 33499180 33499972 -86244926 + L1ME LINE L1 4961 5795 -369 255 234 31 55 chr13 33499973 33500066 -86244832 + L1MC5 LINE L1 7789 7880 -81 1767 201 100 0 chr13 33500066 33500445 -86244453 + MER47B DNA MER2_type 1 417 -1 255 234 31 55 chr13 33500445 33500479 -86244419 + L1MC5 LINE L1 7880 7913 -48 266 288 0 0 chr13 33500742 33500822 -86244076 - MIR SINE MIR 0 262 183 267 311 100 28 chr13 33500846 33501026 -86243872 - L2 LINE L2 -5 3308 3116 400 263 10 20 chr13 33501379 33501478 -86243420 + MER5B DNA MER1_type 17 114 -64 191 269 45 30 chr13 33503977 33504044 -86240854 + L2 LINE L2 3205 3272 0 1810 171 44 3 chr13 33504586 33504884 -86240014 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr13 33505285 33505307 -86239591 + AT_rich Low_complexity Low_complexity 1 22 0 2817 70 0 13 chr13 33505389 33505777 -86239121 + MLT2A1 LTR ERVL 1 383 -61 26 50 0 0 chr13 33505777 33505817 -86239081 + AT_rich Low_complexity Low_complexity 1 40 0 230 57 0 0 chr13 33505819 33505854 -86239044 - MLT2A1 LTR ERVL -44 400 366 366 125 11 4 chr13 33505884 33505967 -86238931 + MLT2A2 LTR ERVL 360 453 0 185 289 24 48 chr13 33506531 33506614 -86238284 - L2 LINE L2 -42 3230 3150 1660 214 73 52 chr13 33506722 33507240 -86237658 + MLT1F LTR MaLR 5 533 -9 236 276 23 11 chr13 33507260 33507347 -86237551 + MLT1F-int LTR MaLR 4 91 -1280 374 276 33 14 chr13 33507945 33508155 -86236743 + MLT1F-int LTR MaLR 307 520 -851 1341 112 128 0 chr13 33508189 33508439 -86236459 - L1MA9 LINE L1 -5 6307 6026 379 252 38 112 chr13 33509114 33509428 -86235470 + MLT1F-int LTR MaLR 1444 1734 -1 1007 246 34 15 chr13 33509429 33509697 -86235201 + MLT1F1 LTR MaLR 1 273 -269 2275 230 90 23 chr13 33509700 33510348 -86234550 + MER63C DNA MER1_type 2 704 -356 3086 168 15 74 chr13 33510348 33511082 -86233816 + LTR8 LTR ERV1 1 691 0 2275 230 90 23 chr13 33511082 33511158 -86233740 + MER63C DNA MER1_type 704 774 -156 2688 130 5 2 chr13 33511159 33511582 -86233316 + MER57B LTR ERV1 2 425 -9 604 195 8 8 chr13 33511651 33511779 -86233119 + MER63C DNA MER1_type 805 932 0 * 1176 180 33 12 chr13 33511779 33512023 -86232875 + MLT1F1 LTR MaLR 311 559 -8 341 232 22 103 chr13 33512208 33512334 -86232564 - MIR SINE MIR -64 144 20 256 133 109 32 chr13 33512644 33512659 -86232239 - L1MC3 LINE L1 -9 7776 7764 2160 64 25 0 chr13 33512659 33512941 -86231957 - L1PA5 LINE L1 -5 6149 5861 256 133 109 32 chr13 33512941 33513239 -86231659 - L1MC3 LINE L1 -21 7764 5989 263 149 0 0 chr13 33514140 33514187 -86230711 - Charlie1 DNA MER1_type -8 2753 2707 2229 198 9 2 chr13 33514282 33514716 -86230182 + MER44D DNA MER2_type 1 492 -113 415 284 9 0 chr13 33514712 33514821 -86230077 - Charlie1 DNA MER1_type -2650 111 2 * 420 293 96 27 chr13 33515131 33515319 -86229579 - MIR SINE MIR -11 251 51 790 244 76 25 chr13 33515339 33515577 -86229321 - MIR SINE MIR -1 261 12 2315 71 40 0 chr13 33516227 33516523 -86228375 + AluY SINE Alu 1 308 -3 222 189 57 0 chr13 33517076 33517129 -86227769 + CT-rich Low_complexity Low_complexity 4 59 0 360 43 0 0 chr13 33517487 33517533 -86227365 + (TG)n Simple_repeat Simple_repeat 1 46 0 1103 252 104 9 chr13 33518551 33518896 -86226002 - MLT1F1 LTR MaLR 0 567 190 261 0 0 0 chr13 33518960 33518989 -86225909 + (T)n Simple_repeat Simple_repeat 1 29 0 695 238 18 6 chr13 33519006 33519174 -86225724 - MLT1F1 LTR MaLR -372 170 1 1100 115 28 197 chr13 33520201 33520591 -86224307 - L1MB3 LINE L1 -13 6170 5847 1719 170 0 31 chr13 33520977 33521271 -86223627 + AluJb SINE Alu 1 285 -27 225 244 128 0 chr13 33522104 33522182 -86222716 - MLT1J2 LTR MaLR -20 430 343 347 256 150 8 chr13 33522265 33522398 -86222500 - MLT1I LTR MaLR -190 219 68 314 279 49 8 chr13 33522584 33522706 -86222192 + MER46C DNA MER2_type 1 127 -211 784 302 53 4 chr13 33522861 33523106 -86221792 - MIR SINE MIR -5 257 1 2072 121 3 7 chr13 33523541 33523846 -86221052 - AluSx SINE Alu -8 304 1 677 167 35 0 chr13 33523849 33523993 -86220905 - L1MA9 LINE L1 -3 6309 6161 5396 26 0 0 chr13 33524236 33524886 -86220012 + L1PA3 LINE L1 5516 6165 0 22 0 0 0 chr13 33525069 33525091 -86219807 + AT_rich Low_complexity Low_complexity 1 22 0 2196 62 7 30 chr13 33525879 33526183 -86218715 - AluY SINE Alu -2 309 13 189 252 272 0 chr13 33526513 33526616 -86218282 + L2 LINE L2 3122 3252 -20 614 200 0 15 chr13 33526636 33526771 -86218127 + L1PB4 LINE L1 6020 6152 -4 1539 160 80 33 chr13 33526868 33527143 -86217755 - AluJo SINE Alu -24 288 1 529 239 201 10 chr13 33527459 33527668 -86217230 - MIR SINE MIR -1 261 13 252 368 11 0 chr13 33528304 33528391 -86216507 - L2 LINE L2 -4 3309 3222 1412 178 2 121 chr13 33528477 33528882 -86216016 - MLT1A1 LTR MaLR -8 357 1 280 288 0 0 chr13 33528890 33528956 -86215942 + L2 LINE L2 3245 3310 -3 200 291 29 107 chr13 33530147 33530250 -86214648 - L2 LINE L2 -71 3201 3107 1881 137 3 11 chr13 33531723 33532028 -86212870 + AluSx SINE Alu 1 303 0 2843 178 40 30 chr13 33532997 33533625 -86211273 - LTR27 LTR ERV1 0 636 3 423 0 0 0 chr13 33534121 33534168 -86210730 + (TG)n Simple_repeat Simple_repeat 2 48 0 230 220 0 60 chr13 33535285 33535335 -86209563 + MIR SINE MIR 23 69 -193 185 281 16 16 chr13 33535350 33535414 -86209484 + MIR SINE MIR 199 262 0 537 220 139 122 chr13 33535754 33536295 -86208603 + MER34C LTR ERV1 36 585 0 1405 167 80 11 chr13 33536344 33536780 -86208118 + LTR54 LTR ERV1 1 510 0 412 262 104 37 chr13 33536796 33536960 -86207938 - MIR SINE MIR -58 204 30 201 291 134 47 chr13 33536982 33537109 -86207789 - L2 LINE L2 -11 3302 3165 311 235 185 34 chr13 33537110 33537229 -86207669 - MER5A DNA MER1_type -46 143 7 210 346 90 60 chr13 33537260 33537494 -86207404 - L2 LINE L2 -221 3051 2811 386 229 102 72 chr13 33538372 33538538 -86206360 - MER20B DNA MER1_type -612 171 1 292 244 102 117 chr13 33538924 33539223 -86205675 + HAL1 LINE L1 1347 1640 -867 2179 104 7 7 chr13 33539223 33539520 -86205378 - AluSg SINE Alu -13 297 1 292 244 102 117 chr13 33539520 33539621 -86205277 + HAL1 LINE L1 1640 1741 -766 21 0 0 0 chr13 33539960 33539981 -86204917 + AT_rich Low_complexity Low_complexity 1 21 0 1435 150 15 15 chr13 33540370 33540636 -86204262 - L1MC2 LINE L1 -12 6332 6067 414 277 0 0 chr13 33541061 33541173 -86203725 - L2 LINE L2 -606 2708 2597 1729 190 27 0 chr13 33541215 33541547 -86203351 - MER58B DNA MER1_type 0 341 1 281 0 77 0 chr13 33541548 33541587 -86203311 + T-rich Low_complexity Low_complexity 3 44 0 1522 93 28 161 chr13 33541598 33541920 -86202978 - AluSc SINE Alu -30 279 1 437 292 129 15 chr13 33542901 33543226 -86201672 + L1MC/D LINE L1 3589 3950 -2196 2269 49 10 26 chr13 33543438 33543742 -86201156 + AluY SINE Alu 1 299 -12 251 287 74 9 chr13 33543764 33543872 -86201026 - MLT1I LTR MaLR -22 387 273 413 290 45 11 chr13 33543877 33544053 -86200845 + L1MC/D LINE L1 5615 5796 -2012 21 0 0 0 chr13 33544059 33544080 -86200818 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 33544241 33544279 -86200619 + AT_rich Low_complexity Low_complexity 1 38 0 309 298 36 36 chr13 33544378 33544546 -86200352 - L1 LINE L1 -3677 2469 2302 1679 146 3 3 chr13 33545581 33545868 -86199030 + L1MA6 LINE L1 5844 6130 -170 1843 172 46 0 chr13 33545875 33546201 -86198697 - MER7A DNA MER2_type -7 339 1 857 205 100 0 chr13 33546221 33546411 -86198487 - MER3 DNA MER1_type 0 209 1 3937 222 89 42 chr13 33547529 33548853 -86196045 + HsTC2 DNA Tc2 61 1629 -269 2261 55 4 4 chr13 33548853 33549151 -86195747 + AluY SINE Alu 9 306 0 3937 222 89 42 chr13 33549151 33549437 -86195461 + HsTC2 DNA Tc2 1629 1900 2 1788 186 0 3 chr13 33551674 33551975 -86192923 + AluJb SINE Alu 1 300 -12 2286 112 0 0 chr13 33551978 33552281 -86192617 + AluSg SINE Alu 1 303 -7 2038 194 69 6 chr13 33552704 33553195 -86191703 - L1PA16 LINE L1 -1743 4403 3882 5416 134 18 16 chr13 33553213 33554939 -86189959 + L1PA16 LINE L1 4434 6157 -9 7893 135 16 10 chr13 33556080 33556478 -86188420 - HSMAR2 DNA Mariner -2 1300 906 207 0 0 0 chr13 33556478 33556501 -86188397 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7893 135 16 10 chr13 33556501 33557393 -86187505 - HSMAR2 DNA Mariner -396 906 2 477 313 25 40 chr13 33559974 33560172 -86184726 - MIR SINE MIR -12 250 56 453 19 0 0 chr13 33560399 33560453 -86184445 + (CA)n Simple_repeat Simple_repeat 2 55 0 6968 243 50 32 chr13 33561251 33562115 -86182783 + L1MEc LINE L1 2166 3012 -3203 1692 191 0 3 chr13 33562115 33562403 -86182495 + AluJb SINE Alu 1 287 -25 6968 243 50 32 chr13 33562403 33564283 -86180615 + L1MEc LINE L1 3012 4935 -1280 2160 158 5 16 chr13 33564283 33564662 -86180236 - THE1C LTR MaLR 0 375 1 6968 243 50 32 chr13 33564662 33564797 -86180101 + L1MEc LINE L1 4935 5066 -1149 1077 165 0 0 chr13 33564797 33564955 -86179943 + AluSq SINE Alu 1 158 -155 275 198 26 103 chr13 33564963 33565079 -86179819 + L1MA10 LINE L1 6228 6334 0 810 266 254 7 chr13 33565485 33565869 -86179029 + L2 LINE L2 2519 2989 -283 894 224 21 5 chr13 33565985 33566177 -86178721 + MLT1H LTR MaLR 40 234 -315 1470 196 58 0 chr13 33566295 33566413 -86178485 + AluJo SINE Alu 3 113 -199 243 0 0 0 chr13 33566413 33566440 -86178458 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1470 196 58 0 chr13 33566440 33566581 -86178317 + AluJo SINE Alu 113 277 -35 226 226 0 32 chr13 33566592 33566654 -86178244 + MLT1G1 LTR MaLR 520 579 -16 440 245 9 9 chr13 33566674 33566780 -86178118 + L2 LINE L2 3171 3276 -37 198 0 0 0 chr13 33566848 33566870 -86178028 + (TA)n Simple_repeat Simple_repeat 1 22 0 1039 251 47 0 chr13 33567105 33567340 -86177558 - MLT1F1 LTR MaLR 0 567 322 2084 92 9 82 chr13 33567470 33567798 -86177100 - AluSx SINE Alu -5 307 4 380 226 77 107 chr13 33567801 33567969 -86176929 - MLT1E LTR MaLR -375 167 5 189 107 0 0 chr13 33568772 33568800 -86176098 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 213 196 0 0 chr13 33569176 33569222 -86175676 + (CA)n Simple_repeat Simple_repeat 1 46 0 1384 276 56 82 chr13 33570637 33571348 -86173550 + MER21B LTR ERV1 22 714 -149 387 194 61 103 chr13 33571709 33571874 -86173024 + L2 LINE L2 2357 2514 -800 992 188 2 205 chr13 33571915 33572178 -86172720 + Charlie1a DNA MER1_type 1 153 -2608 1131 201 43 112 chr13 33572178 33572570 -86172328 - MLT1A1 LTR MaLR 0 365 1 992 188 2 205 chr13 33572570 33572715 -86172183 + Charlie1a DNA MER1_type 153 326 -1129 621 172 70 102 chr13 33572776 33572991 -86171907 + MER3 DNA MER1_type 1 208 -1 353 276 141 18 chr13 33574328 33574491 -86170407 - MIR SINE MIR -50 212 30 2115 138 33 30 chr13 33576243 33576606 -86168292 - THE1B LTR MaLR 0 364 1 200 83 0 28 chr13 33576988 33577024 -86167874 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 2232 147 0 8 chr13 33577028 33577395 -86167503 - L1PB1 LINE L1 -3 6148 5785 551 83 83 5 chr13 33577400 33577609 -86167289 + (TA)n Simple_repeat Simple_repeat 1 225 0 392 129 0 14 chr13 33577751 33577821 -86167077 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 849 136 0 0 chr13 33577821 33577946 -86166952 - AluJb SINE Alu -187 125 1 441 330 78 73 chr13 33577972 33578423 -86166475 + L2 LINE L2 2819 3271 -1 888 205 0 0 chr13 33578751 33578907 -86165991 + FRAM SINE Alu 2 157 -9 31 0 0 0 chr13 33578917 33578948 -86165950 + AT_rich Low_complexity Low_complexity 1 31 0 180 191 143 0 chr13 33578961 33579003 -86165895 - L3 LINE CR1 -71 1506 1459 1363 139 179 7 chr13 33579131 33579433 -86165465 + L1MB7 LINE L1 5815 6168 -16 1988 122 38 0 chr13 33579711 33579998 -86164900 - AluSx SINE Alu -14 298 1 25 0 0 0 chr13 33580006 33580031 -86164867 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr13 33580352 33580387 -86164511 - L2 LINE L2 -6 3307 3273 532 233 184 82 chr13 33580936 33581267 -86163631 - MLT1A1 LTR MaLR 0 365 1 2058 189 26 8 chr13 33581278 33581658 -86163240 - MLT1A1-int LTR MaLR -11 1724 1338 1273 148 15 0 chr13 33581723 33581926 -86162972 - AluSg/x SINE Alu -4 306 101 760 182 32 0 chr13 33581931 33582085 -86162813 - MLT2B1 LTR ERVL -361 159 1 343 281 113 38 chr13 33584330 33584515 -86160383 + MER20 DNA MER1_type 1 199 -20 279 320 133 35 chr13 33585661 33585917 -86158981 - L2 LINE L2 -782 2532 2252 410 271 271 52 chr13 33586279 33586648 -86158250 + L2 LINE L2 2863 3312 -1 2147 110 0 19 chr13 33587441 33587749 -86157149 + AluSx SINE Alu 1 302 -10 755 109 0 9 chr13 33588116 33588226 -86156672 - MER46A DNA MER2_type -3 233 125 1541 131 0 4 chr13 33589543 33589772 -86155126 - MER46A DNA MER2_type -3 233 6 248 235 25 12 chr13 33590271 33590352 -86154546 - MLT1J LTR MaLR 0 511 430 184 373 55 18 chr13 33590906 33591016 -86153882 - L3b LINE CR1 -49 1534 1421 2045 131 7 0 chr13 33591190 33591481 -86153417 - AluSx SINE Alu -18 294 2 300 120 0 0 chr13 33592473 33592523 -86152375 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 370 330 81 4 chr13 33592995 33593159 -86151739 - MIR SINE MIR -76 132 10 1095 52 0 58 chr13 33593233 33593424 -86151474 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1793 148 11 3 chr13 33593424 33593836 -86151062 - AluSx SINE Alu 0 440 27 228 297 36 62 chr13 33593836 33594028 -86150870 - L2 LINE L2 -220 3052 2866 * 761 267 83 21 chr13 33594004 33594238 -86150660 + MIR SINE MIR 21 262 0 21 0 0 0 chr13 33594334 33594355 -86150543 + AT_rich Low_complexity Low_complexity 1 21 0 240 400 27 0 chr13 33598225 33598335 -86146563 - MIR SINE MIR -66 196 84 513 280 33 50 chr13 33598753 33598935 -86145963 + L2 LINE L2 3134 3312 -1 324 245 64 11 chr13 33600651 33600745 -86144153 - MIR SINE MIR -8 254 156 6866 142 24 6 chr13 33600745 33601839 -86143059 + Tigger7 DNA MER2_type 1 1114 -1373 3610 45 0 0 chr13 33601839 33602281 -86142617 + L1PA4 LINE L1 5711 6152 -3 476 205 0 0 chr13 33602310 33602393 -86142505 + Tigger7 DNA MER2_type 2505 2587 0 252 0 0 0 chr13 33602531 33602559 -86142339 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr13 33603424 33603445 -86141453 + AT_rich Low_complexity Low_complexity 1 21 0 393 277 92 41 chr13 33603836 33604031 -86140867 + MIR SINE MIR 2 206 -56 2153 82 3 48 chr13 33604439 33604755 -86140143 - AluY SINE Alu -9 302 1 1237 216 139 29 chr13 33605049 33605477 -86139421 - MLT1C LTR MaLR 0 467 6 223 322 58 0 chr13 33605907 33605994 -86138904 - L2 LINE L2 -627 2687 2596 288 373 13 32 chr13 33606508 33606666 -86138232 + L3 LINE CR1 13 167 -1410 301 327 33 33 chr13 33606771 33606924 -86137974 + L3 LINE CR1 416 568 -1009 669 241 35 96 chr13 33606936 33607197 -86137701 + MER112 DNA MER1_type 6 250 -10 239 250 161 8 chr13 33607246 33607370 -86137528 + L3 LINE CR1 634 776 -801 29 35 0 35 chr13 33607378 33607410 -86137488 + AT_rich Low_complexity Low_complexity 1 32 -24 1925 158 3 0 chr13 33607410 33607707 -86137191 - AluSq SINE Alu -15 298 1 29 35 0 35 chr13 33607707 33607732 -86137166 + AT_rich Low_complexity Low_complexity 32 56 0 265 275 0 92 chr13 33608259 33608390 -86136508 + L3 LINE CR1 964 1082 -495 458 315 94 28 chr13 33608613 33608826 -86136072 - MIR SINE MIR -34 228 2 215 331 191 0 chr13 33609227 33609384 -86135514 - MIR SINE MIR -23 239 53 22 0 0 0 chr13 33610501 33610523 -86134375 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 33610940 33610962 -86133936 + GC_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr13 33612550 33612575 -86132323 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 22 56 0 0 chr13 33614032 33614068 -86130830 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 33615470 33615494 -86129404 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 33615778 33615799 -86129099 + AT_rich Low_complexity Low_complexity 1 21 0 249 321 12 24 chr13 33616108 33616192 -86128706 + L2 LINE L2 3134 3216 -56 234 319 0 0 chr13 33616780 33616852 -86128046 + MLT1K LTR MaLR 200 271 -317 193 253 95 105 chr13 33617431 33617526 -86127372 - L2 LINE L2 -484 2830 2737 502 246 225 21 chr13 33618721 33618957 -86125941 + MLT1K LTR MaLR 279 562 -26 74 69 0 0 chr13 33618970 33619114 -86125784 + AT_rich Low_complexity Low_complexity 1 144 0 651 162 0 0 chr13 33619295 33619394 -86125504 + AluJ/FLAM SINE Alu 1 99 -213 601 172 0 0 chr13 33619393 33619486 -86125412 + AluJb SINE Alu 203 295 -17 * 375 267 154 21 chr13 33619542 33619782 -86125116 + L1ME LINE L1 5547 5818 -303 354 226 168 66 chr13 33619785 33619922 -86124976 + MIR SINE MIR 112 262 0 433 290 89 24 chr13 33620480 33620649 -86124249 - MIR SINE MIR -71 191 12 27 29 0 0 chr13 33621295 33621329 -86123569 + AT_rich Low_complexity Low_complexity 1 34 0 219 365 31 10 chr13 33621432 33621528 -86123370 - MIR SINE MIR -151 111 14 225 278 0 0 chr13 33621572 33621626 -86123272 - MIR SINE MIR -30 232 179 1962 147 41 29 chr13 33622115 33622249 -86122649 - MER2 DNA MER2_type 0 345 214 2115 126 52 15 chr13 33622249 33622574 -86122324 + MER1B DNA MER1_type 1 337 0 1962 147 41 29 chr13 33622574 33622780 -86122118 - MER2 DNA MER2_type -131 214 1 2004 157 21 3 chr13 33623086 33623424 -86121474 + MER2 DNA MER2_type 1 344 0 296 320 148 8 chr13 33623507 33623629 -86121269 - MIR3 SINE MIR -51 157 19 327 329 33 90 chr13 33623807 33624108 -86120790 - L2 LINE L2 -74 3198 2915 983 191 26 24 chr13 33624233 33624476 -86120422 - MLT2B1 LTR ERVL -174 240 1 216 139 93 23 chr13 33624562 33624605 -86120293 + L2 LINE L2 3267 3312 -1 25 65 0 0 chr13 33624793 33624839 -86120059 + AT_rich Low_complexity Low_complexity 1 46 0 922 121 5 107 chr13 33624953 33625008 -86119890 - L1MB3 LINE L1 -3 6180 6121 1157 143 39 0 chr13 33625008 33625211 -86119687 - L1MA6 LINE L1 0 6300 6090 922 121 5 107 chr13 33625211 33625361 -86119537 - L1MB3 LINE L1 -62 6121 5996 512 117 0 0 chr13 33625362 33625439 -86119459 - AluS SINE Alu -236 77 1 414 220 0 0 chr13 33625497 33625597 -86119301 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 880 169 94 42 chr13 33626408 33626716 -86118182 + MER33 DNA MER1_type 1 324 0 6942 134 51 3 chr13 33628180 33629347 -86115551 + Tigger3b DNA MER2_type 10 1231 0 409 335 92 52 chr13 33630052 33630324 -86114574 - L2 LINE L2 0 3272 2990 917 191 115 32 chr13 33630336 33630614 -86114284 + MER33 DNA MER1_type 1 301 -23 283 208 13 26 chr13 33630798 33630875 -86114023 + MLT1J LTR MaLR 436 511 0 967 243 72 6 chr13 33630880 33631226 -86113672 + Charlie7 DNA MER1_type 863 1231 -1381 271 321 91 48 chr13 33631410 33631597 -86113301 - MIR3 SINE MIR 0 208 14 1530 167 72 72 chr13 33631627 33632017 -86112881 - MLT1B LTR MaLR 0 390 1 183 100 0 0 chr13 33632374 33632404 -86112494 + (TAA)n Simple_repeat Simple_repeat 1 30 0 309 310 6 16 chr13 33632404 33632575 -86112323 - MIR SINE MIR -11 251 37 218 324 36 18 chr13 33635005 33635116 -86109782 + MIR SINE MIR 17 129 -133 311 307 124 7 chr13 33635668 33635805 -86109093 + MIR3 SINE MIR 47 199 -9 530 211 73 0 chr13 33636140 33636249 -86108649 - MER58A DNA MER1_type 0 224 108 1460 264 102 46 chr13 33636367 33637025 -86107873 - MER21B LTR ERV1 -152 711 17 420 274 44 9 chr13 33637040 33637153 -86107745 - MER58A DNA MER1_type 0 117 1 22 35 0 0 chr13 33637240 33637269 -86107629 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 33637783 33637828 -86107070 + AT_rich Low_complexity Low_complexity 1 45 0 10525 163 32 3 chr13 33637874 33640653 -86104245 - L1PA12 LINE L1 -1 6167 3326 244 244 88 31 chr13 33640754 33640914 -86103984 - L1MDb LINE L1 -4653 1934 1766 1232 107 11 28 chr13 33640928 33641105 -86103793 - AluSg/x SINE Alu -25 287 114 652 328 81 36 chr13 33641150 33641655 -86103243 - L1MDb LINE L1 -4887 1509 1110 1527 201 3 3 chr13 33641655 33641958 -86102940 - AluJb SINE Alu -9 303 1 652 328 81 36 chr13 33641958 33642128 -86102770 - L1MDb LINE L1 -5286 1110 949 254 224 24 12 chr13 33642336 33642421 -86102477 - L1MB2 LINE L1 0 6171 6086 1833 199 6 0 chr13 33642421 33642758 -86102140 + MER2 DNA MER2_type 1 339 -6 544 219 224 10 chr13 33642770 33642962 -86101936 - L1MB7 LINE L1 -84 6100 5868 2087 279 114 27 chr13 33643313 33644465 -86100433 - L2 LINE L2 0 3313 2078 1921 132 14 14 chr13 33644473 33644760 -86100138 + AluJb SINE Alu 14 300 -12 1308 191 57 35 chr13 33644766 33644907 -86099991 + AluJo SINE Alu 1 138 -174 351 0 0 0 chr13 33644907 33644946 -86099952 + (TA)n Simple_repeat Simple_repeat 1 39 0 1308 191 57 35 chr13 33644946 33645087 -86099811 + AluJo SINE Alu 138 289 -23 584 298 235 22 chr13 33645087 33645500 -86099398 - L2 LINE L2 -1566 1748 1248 23 0 0 0 chr13 33646058 33646081 -86098817 + AT_rich Low_complexity Low_complexity 1 23 0 1963 189 37 11 chr13 33646264 33646644 -86098254 - MSTD LTR MaLR -6 390 1 211 247 74 12 chr13 33646654 33646735 -86098163 - MIR SINE MIR -29 233 148 187 351 0 18 chr13 33646764 33646821 -86098077 - MIR SINE MIR -183 79 24 193 373 27 0 chr13 33647334 33647409 -86097489 - L2 LINE L2 -48 3224 3148 263 252 159 20 chr13 33647467 33647618 -86097280 - L1ME4a LINE L1 0 6121 5950 2193 109 7 0 chr13 33647640 33647934 -86096964 - AluSx SINE Alu -16 296 1 239 301 35 71 chr13 33648621 33648734 -86096164 - MIR3 SINE MIR -23 185 77 195 69 0 0 chr13 33649293 33649322 -86095576 + (A)n Simple_repeat Simple_repeat 1 29 0 22 56 0 0 chr13 33649857 33649893 -86095005 + AT_rich Low_complexity Low_complexity 1 36 0 185 254 0 15 chr13 33650386 33650453 -86094445 + (TA)n Simple_repeat Simple_repeat 2 67 0 539 333 86 44 chr13 33650660 33650755 -86094143 - L2 LINE L2 -32 3281 3191 297 0 0 0 chr13 33650755 33650788 -86094110 + (CA)n Simple_repeat Simple_repeat 2 34 0 539 333 86 44 chr13 33650788 33651303 -86093595 - L2 LINE L2 -122 3191 2645 2545 191 19 0 chr13 33651463 33651996 -86092902 - L1PA12 LINE L1 -2886 4698 4156 275 75 19 16 chr13 33651999 33652051 -86092847 - Alu SINE Alu -260 39 1 6790 220 28 21 chr13 33652052 33653557 -86091341 - L1PA12 LINE L1 -4968 2616 7 332 266 129 0 chr13 33654235 33654359 -86090539 - MIR SINE MIR -72 190 51 6218 137 32 3 chr13 33654398 33655820 -86089078 + L1PB1 LINE L1 4688 6150 -1 243 103 0 0 chr13 33655871 33655910 -86088988 + (T)n Simple_repeat Simple_repeat 1 39 0 2145 135 3 0 chr13 33656169 33656480 -86088418 - AluSp SINE Alu -1 312 1 2158 122 0 0 chr13 33656554 33656849 -86088049 - AluSx SINE Alu -17 295 1 1449 189 56 25 chr13 33657061 33657347 -86087551 - AluJo SINE Alu -17 295 1 2205 248 79 44 chr13 33657736 33658488 -86086410 - L1ME2 LINE L1 -22 6211 5390 2048 131 34 0 chr13 33658488 33658779 -86086119 + AluSx SINE Alu 2 302 -10 2205 248 79 44 chr13 33658779 33659056 -86085842 - L1ME2 LINE L1 -843 5390 5124 387 226 99 94 chr13 33659157 33659563 -86085335 - L1ME2 LINE L1 -1340 4875 4465 299 24 0 24 chr13 33659563 33659604 -86085294 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 544 216 75 0 chr13 33659613 33659747 -86085151 + MLT1A1 LTR MaLR 1 144 -221 471 282 66 42 chr13 33659750 33660009 -86084889 - L1ME2 LINE L1 -2022 4193 3929 2210 230 107 0 chr13 33660025 33660613 -86084285 - L1MB7 LINE L1 0 6184 5534 1035 217 234 36 chr13 33660612 33661354 -86083544 - L1ME2 LINE L1 -2299 3916 3028 * 917 241 67 52 chr13 33661358 33661421 -86083477 - L1ME2 LINE L1 -3248 2967 2906 2001 126 0 17 chr13 33661421 33661714 -86083184 - AluSx SINE Alu -19 293 6 917 241 67 52 chr13 33661714 33662131 -86082767 - L1ME2 LINE L1 -3309 2906 2480 180 0 0 0 chr13 33662134 33662154 -86082744 + (TTA)n Simple_repeat Simple_repeat 2 21 0 33064 76 48 8 chr13 33662154 33667754 -86077144 - L1PA6 LINE L1 -14 6455 632 300 28 0 0 chr13 33667754 33667790 -86077108 - L1PA6 LINE L1 -6416 45 10 * 494 248 77 63 chr13 33667788 33668172 -86076726 - L1ME2 LINE L1 -3723 2523 2143 851 202 52 0 chr13 33668292 33668548 -86076350 - L1M4 LINE L1 -725 5518 5252 5418 252 76 47 chr13 33668552 33670063 -86074835 - L1MEc LINE L1 -987 5228 3762 1937 106 0 4 chr13 33670063 33670327 -86074571 - AluSx SINE Alu -2 310 48 5418 252 76 47 chr13 33670327 33671303 -86073595 - L1MEc LINE L1 -2453 3762 2816 1860 148 7 7 chr13 33671303 33671593 -86073305 - AluSx SINE Alu -21 291 2 5418 252 76 47 chr13 33671593 33671928 -86072970 - L1MEc LINE L1 -3399 2816 2492 569 277 94 0 chr13 33671928 33672130 -86072768 + MER58A DNA MER1_type 1 221 -3 5418 252 76 47 chr13 33672130 33672849 -86072049 - L1MEc LINE L1 -3723 2492 1617 381 326 191 0 chr13 33673470 33673662 -86071236 + MIR SINE MIR 34 260 -2 21 0 0 0 chr13 33674222 33674243 -86070655 + AT_rich Low_complexity Low_complexity 1 21 0 1510 182 24 68 chr13 33674593 33674962 -86069936 - L1PA15 LINE L1 -3 6162 5810 243 0 0 0 chr13 33675532 33675559 -86069339 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 68 0 0 chr13 33675643 33675687 -86069211 + AT_rich Low_complexity Low_complexity 1 44 0 3193 220 55 40 chr13 33675695 33675923 -86068975 + L1ME1 LINE L1 5211 5434 -732 1659 116 39 105 chr13 33675923 33676286 -86068612 + MER44D DNA MER2_type 1 609 0 3193 220 55 40 chr13 33676286 33676737 -86068161 + L1ME1 LINE L1 5434 5876 -290 2009 98 15 0 chr13 33676737 33677011 -86067887 + AluSg SINE Alu 1 278 -32 324 0 0 0 chr13 33677017 33677053 -86067845 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3193 220 55 40 chr13 33677053 33677308 -86067590 + L1ME1 LINE L1 5880 6161 -5 21 0 0 0 chr13 33677315 33677336 -86067562 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr13 33677908 33677931 -86066967 + (TC)n Simple_repeat Simple_repeat 2 24 0 379 0 39 0 chr13 33678115 33678166 -86066732 + (CA)n Simple_repeat Simple_repeat 2 54 0 914 262 13 4 chr13 33678335 33678568 -86066330 - MIR SINE MIR -23 239 5 31 26 0 0 chr13 33679039 33679077 -86065821 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr13 33679362 33679397 -86065501 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr13 33679473 33679510 -86065388 + AT_rich Low_complexity Low_complexity 1 37 0 193 313 157 18 chr13 33682057 33682223 -86062675 + L3 LINE CR1 205 393 -1184 278 369 21 7 chr13 33682491 33682632 -86062266 + L3 LINE CR1 981 1123 -454 203 203 89 89 chr13 33682984 33683063 -86061835 + L3 LINE CR1 1425 1503 -74 404 256 58 16 chr13 33683134 33683255 -86061643 - MIR SINE MIR -103 159 34 20000 168 39 19 chr13 33683302 33688822 -86056076 + L1M1 LINE L1 13 5638 -1927 555 65 98 0 chr13 33688997 33689150 -86055748 + (TA)n Simple_repeat Simple_repeat 1 168 0 13546 197 60 9 chr13 33689150 33695192 -86049706 - L1P5 LINE L1 -360 6507 6 188 356 139 0 chr13 33695642 33695743 -86049155 + L2 LINE L2 3149 3263 -9 243 245 0 0 chr13 33696366 33696419 -86048479 + MIR SINE MIR 74 126 -82 213 132 0 0 chr13 33697815 33697853 -86047045 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 1882 135 4 4 chr13 33699839 33700154 -86044744 + AluSx SINE Alu 2 316 0 4813 85 27 3 chr13 33700374 33701046 -86043852 + LTR12 LTR ERV1 1 688 0 2532 292 96 46 chr13 33701181 33702230 -86042668 + L2 LINE L2 1294 2289 -1024 180 77 0 0 chr13 33702230 33702256 -86042642 + (TG)n Simple_repeat Simple_repeat 2 27 0 2532 292 96 46 chr13 33702256 33703112 -86041786 + L2 LINE L2 2289 3305 -8 2516 212 63 26 chr13 33703569 33704327 -86040571 + L1M4 LINE L1 2323 3108 -3038 2820 210 88 20 chr13 33704332 33704947 -86039951 - L1MB8 LINE L1 -207 5971 5399 2175 135 0 0 chr13 33704947 33705244 -86039654 + AluSx SINE Alu 1 297 -15 2820 210 88 20 chr13 33705244 33705701 -86039197 - L1MB8 LINE L1 -779 5399 4813 320 252 0 20 chr13 33705766 33705889 -86039009 + L1M4 LINE L1 2912 3030 -3116 4732 138 20 1 chr13 33706154 33706902 -86037996 - L1MC1 LINE L1 0 6333 5572 21 0 0 0 chr13 33706970 33706991 -86037907 + AT_rich Low_complexity Low_complexity 1 21 0 496 280 34 11 chr13 33707078 33707253 -86037645 + HAL1b LINE L1 521 699 -649 188 314 157 13 chr13 33707557 33707710 -86037188 + L2 LINE L2 3097 3271 -1 433 305 28 67 chr13 33709141 33709290 -86035608 + MIR3 SINE MIR 20 163 -45 532 261 30 0 chr13 33709538 33709672 -86035226 + MER117 DNA MER1_type 32 169 -28 857 261 49 53 chr13 33709952 33710155 -86034743 + MLT1J LTR MaLR 1 203 -308 2081 163 47 128 chr13 33710155 33710224 -86034674 + LTR48B LTR ERV1 1 74 -570 2014 135 3 7 chr13 33710224 33710520 -86034378 + AluSx SINE Alu 3 297 -15 270 0 0 0 chr13 33710520 33710550 -86034348 + (TA)n Simple_repeat Simple_repeat 2 31 0 2081 163 47 128 chr13 33710550 33711180 -86033718 + LTR48B LTR ERV1 72 644 0 857 261 49 53 chr13 33711180 33711260 -86033638 + MLT1J LTR MaLR 203 283 -228 252 280 50 10 chr13 33711290 33711390 -86033508 + MLT1J LTR MaLR 377 480 -31 1084 208 38 5 chr13 33711597 33711809 -86033089 + MER58A DNA MER1_type 6 224 0 1060 230 50 31 chr13 33712694 33713012 -86031886 + MER33 DNA MER1_type 1 324 0 3639 120 12 2 chr13 33713024 33713542 -86031356 + MER1A DNA MER1_type 5 527 0 739 144 14 7 chr13 33714153 33714292 -86030606 - L1MA6 LINE L1 -5 6295 6156 1819 156 4 0 chr13 33714698 33714974 -86029924 + AluJo SINE Alu 6 282 -30 1734 144 180 18 chr13 33716477 33716865 -86028033 + LTR47A LTR ERVL 2 452 0 1970 122 14 0 chr13 33716994 33717296 -86027602 - AluSg SINE Alu 0 306 1 352 309 41 0 chr13 33717298 33717395 -86027503 - L2 LINE L2 -8 3305 3205 800 215 13 0 chr13 33717547 33717705 -86027193 + FAM SINE Alu 5 164 -11 332 204 61 21 chr13 33717752 33717860 -86027038 + L1MD2 LINE L1 6243 7994 -1 1976 152 24 32 chr13 33717951 33718327 -86026571 - THE1C LTR MaLR 0 375 3 22 0 0 0 chr13 33718416 33718438 -86026460 + AT_rich Low_complexity Low_complexity 1 22 0 265 313 104 10 chr13 33719767 33719863 -86025035 + L2 LINE L2 3168 3272 0 345 295 26 19 chr13 33720353 33720509 -86024389 + L1MC4a LINE L1 5758 5914 -1894 27 0 0 0 chr13 33720640 33720667 -86024231 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 33721027 33721048 -86023850 + AT_rich Low_complexity Low_complexity 1 21 0 251 231 0 19 chr13 33721091 33721143 -86023755 + MIR SINE MIR 114 164 -98 222 37 0 0 chr13 33722368 33722395 -86022503 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1463 190 76 102 chr13 33723760 33724016 -86020882 - MER34B LTR ERV1 0 565 304 852 134 8 15 chr13 33724016 33724150 -86020748 + FLAM_C SINE Alu 1 133 0 1463 190 76 102 chr13 33724150 33724461 -86020437 - MER34B LTR ERV1 -261 304 13 1948 130 4 0 chr13 33724781 33725058 -86019840 - AluSx SINE Alu -34 278 1 216 0 0 0 chr13 33725501 33725525 -86019373 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 478 171 9 19 chr13 33725594 33725702 -86019196 + L1MA7 LINE L1 5914 6020 -280 312 180 0 67 chr13 33725711 33725800 -86019098 + L1MA7 LINE L1 6206 6288 -3 384 268 45 42 chr13 33726371 33726608 -86018290 - MER41B LTR ERV1 -209 426 55 500 255 243 31 chr13 33726682 33726941 -86017957 + L2 LINE L2 2999 3312 -1 1329 211 22 89 chr13 33727024 33727053 -86017845 + LTR37B LTR ERV1 10 39 -429 2584 196 30 13 chr13 33727053 33727593 -86017305 + MER44D DNA MER2_type 1 604 -1 1329 211 22 89 chr13 33727593 33728055 -86016843 + LTR37B LTR ERV1 39 468 0 222 128 0 0 chr13 33729038 33729077 -86015821 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 11996 132 36 7 chr13 33729086 33729129 -86015769 + Tigger1 DNA MER2_type 307 347 -2071 273 29 0 0 chr13 33729129 33729163 -86015735 + (TC)n Simple_repeat Simple_repeat 1 34 0 11996 132 36 7 chr13 33729163 33729772 -86015126 + Tigger1 DNA MER2_type 347 937 -1481 2020 144 0 22 chr13 33729772 33730085 -86014813 - AluSx SINE Alu -6 306 1 11996 132 36 7 chr13 33730085 33731484 -86013414 + Tigger1 DNA MER2_type 937 2418 0 775 138 36 0 chr13 33731680 33731818 -86013080 - Tigger1 DNA MER2_type -223 2195 2053 2277 113 3 0 chr13 33731854 33732154 -86012744 + AluSp SINE Alu 1 301 -12 21 57 0 0 chr13 33732375 33732410 -86012488 + AT_rich Low_complexity Low_complexity 1 35 0 2140 200 41 12 chr13 33732996 33733487 -86011411 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr13 33733659 33733684 -86011214 + AT_rich Low_complexity Low_complexity 1 25 0 1595 122 4 32 chr13 33733804 33733943 -86010955 + AluSq SINE Alu 1 132 -181 2198 125 0 0 chr13 33733943 33734246 -86010652 + AluSc SINE Alu 1 303 -6 1595 122 4 32 chr13 33734246 33734352 -86010546 + AluSq SINE Alu 132 239 -74 1982 147 26 3 chr13 33734450 33734756 -86010142 + AluSq SINE Alu 1 313 0 704 196 0 29 chr13 33735140 33735278 -86009620 + AluJo SINE Alu 1 134 -178 1014 226 47 28 chr13 33735838 33735897 -86009001 - LTR37A LTR ERV1 -22 404 348 1936 164 3 0 chr13 33735897 33736190 -86008708 + AluSq SINE Alu 1 294 -19 1014 226 47 28 chr13 33736190 33736489 -86008409 - LTR37A LTR ERV1 -78 348 39 2012 141 9 3 chr13 33736837 33737177 -86007721 - LTR35 LTR ERV1 0 618 277 1257 160 0 0 chr13 33737177 33737364 -86007534 + AluSg/x SINE Alu 100 286 -26 1739 103 0 73 chr13 33737371 33737435 -86007463 - LTR35 LTR ERV1 -339 279 212 2021 136 7 7 chr13 33737435 33737730 -86007168 + AluSx SINE Alu 1 295 -17 1739 103 0 73 chr13 33737730 33737966 -86006932 - LTR35 LTR ERV1 -406 212 1 2579 203 83 69 chr13 33739039 33739853 -86005045 + LTR1B LTR ERV1 1 826 0 271 348 76 50 chr13 33740417 33740877 -86004021 - L2 LINE L2 -411 2903 2432 1721 182 89 9 chr13 33741399 33741828 -86003070 + MER31A LTR ERV1 1 463 -22 2214 136 31 0 chr13 33741878 33742230 -86002668 + THE1B LTR MaLR 1 363 -1 8728 121 35 59 chr13 33742231 33743796 -86001102 + THE1B-int LTR MaLR 1 1527 -53 2132 142 40 6 chr13 33743815 33744167 -86000731 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr13 33745221 33745249 -85999649 + AT_rich Low_complexity Low_complexity 1 28 0 328 161 7 129 chr13 33745458 33745550 -85999348 - LTR37A LTR ERV1 0 426 324 1769 173 0 7 chr13 33745550 33745839 -85999059 + AluJb SINE Alu 3 289 -23 328 161 7 129 chr13 33745839 33745868 -85999030 - LTR37A LTR ERV1 -102 324 324 1910 181 69 29 chr13 33745868 33746316 -85998582 + MER31B LTR ERV1 1 466 0 328 161 7 129 chr13 33746316 33746348 -85998550 - LTR37A LTR ERV1 -101 325 291 679 58 19 19 chr13 33746354 33746457 -85998441 + LTR7 LTR ERV1 346 448 -2 1390 99 9 0 chr13 33746459 33746682 -85998216 + HERVH LTR ERV1 1 225 -7488 * 15928 84 40 14 chr13 33746663 33749155 -85995743 + HERVH LTR ERV1 437 2995 -4718 936 120 7 0 chr13 33749134 33749284 -85995614 + HERVH LTR ERV1 3140 3290 -4423 * 998 142 0 6 chr13 33749274 33749436 -85995462 + HERVH LTR ERV1 3492 3652 -4061 * 4389 60 10 2 chr13 33749428 33750031 -85994867 + HERVH LTR ERV1 7106 7713 0 1333 172 55 69 chr13 33750031 33750449 -85994449 + LTR7 LTR ERV1 1 412 -38 235 175 0 35 chr13 33750567 33750624 -85994274 - LTR37A LTR ERV1 -288 138 84 1236 197 46 9 chr13 33750647 33750949 -85993949 - MER61A LTR ERV1 -37 306 1 304 196 0 0 chr13 33750971 33751027 -85993871 - LTR37A LTR ERV1 -363 63 8 28 0 0 0 chr13 33751321 33751349 -85993549 + AT_rich Low_complexity Low_complexity 1 28 0 910 246 92 46 chr13 33751632 33751788 -85993110 + MLT1A1 LTR MaLR 1 148 -217 198 71 0 0 chr13 33751788 33751816 -85993082 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 910 246 92 46 chr13 33751816 33752008 -85992890 + MLT1A1 LTR MaLR 148 365 0 408 297 0 0 chr13 33752096 33752207 -85992691 - MIR SINE MIR -4 258 148 330 189 37 33 chr13 33752928 33753026 -85991872 - MER58 DNA MER1_type 0 2420 121 498 155 54 23 chr13 33753276 33753405 -85991493 + MER31-int LTR ERV1 1162 1294 -3642 464 127 155 56 chr13 33753453 33753595 -85991303 + MER31-int LTR ERV1 1291 1446 -3490 493 263 17 30 chr13 33753739 33753975 -85990923 + MER31-int LTR ERV1 1683 1915 -3021 2551 202 13 25 chr13 33754387 33754911 -85989987 - MLT2B1 LTR ERVL 0 520 3 2731 221 39 77 chr13 33756055 33757047 -85987851 + MER31-int LTR ERV1 3270 4224 -712 1381 187 8 0 chr13 33757062 33757329 -85987569 + MER49 LTR ERV1 15 283 -640 1331 258 6 9 chr13 33757389 33757711 -85987187 + MER4D LTR ERV1 551 871 -32 534 149 163 68 chr13 33757764 33757985 -85986913 + LTR37A LTR ERV1 4 245 -181 298 277 0 0 chr13 33758034 33758135 -85986763 + MER31-int LTR ERV1 4370 4470 -466 287 233 9 95 chr13 33758765 33758881 -85986017 + MER92B LTR ERV1 1 106 -530 413 116 14 0 chr13 33759055 33759124 -85985774 + MER92C LTR ERV1 485 554 0 1956 281 132 65 chr13 33759196 33761165 -85983733 - HAL1 LINE L1 -396 2111 10 762 139 90 0 chr13 33762323 33762445 -85982453 - FLAM_A SINE Alu 0 133 1 1787 206 125 22 chr13 33762615 33763197 -85981701 + LTR48B LTR ERV1 1 642 -2 258 32 0 0 chr13 33765303 33765334 -85979564 + (TA)n Simple_repeat Simple_repeat 1 31 0 1768 173 19 3 chr13 33765335 33765642 -85979256 - AluJo SINE Alu 0 312 1 1898 194 18 20 chr13 33765830 33766227 -85978671 - MSTD LTR MaLR 0 396 1 27 29 0 0 chr13 33766322 33766356 -85978542 + AT_rich Low_complexity Low_complexity 1 34 0 2499 110 0 24 chr13 33767110 33767483 -85977415 - THE1B LTR MaLR 0 364 1 1883 174 50 27 chr13 33767576 33768116 -85976782 - MLT2A2 LTR ERVL -2 552 1 248 305 42 0 chr13 33769391 33769509 -85975389 + (TA)n Simple_repeat Simple_repeat 2 124 0 616 220 38 27 chr13 33769509 33769695 -85975203 + MER112 DNA MER1_type 73 260 0 322 298 0 0 chr13 33770491 33770575 -85974323 + L2 LINE L2 3186 3269 -3 287 317 84 54 chr13 33770679 33771048 -85973850 + L2 LINE L2 2398 2777 -537 224 276 35 0 chr13 33771304 33771362 -85973536 - L2 LINE L2 -17 3296 3237 728 212 26 82 chr13 33771499 33771730 -85973168 + MER20 DNA MER1_type 2 219 0 3056 119 38 4 chr13 33771888 33772410 -85972488 - L1MB3 LINE L1 -10 6173 5634 381 301 78 19 chr13 33772410 33772616 -85972282 - L2 LINE L2 -7 3306 3089 255 297 0 0 chr13 33772740 33772804 -85972094 - MIR SINE MIR -149 113 50 1900 95 80 0 chr13 33772875 33773165 -85971733 - AluSp SINE Alu 0 311 1 239 283 0 0 chr13 33774025 33774078 -85970820 - L2 LINE L2 -10 3262 3210 456 291 10 0 chr13 33774403 33774506 -85970392 - L2 LINE L2 -33 3239 3136 277 301 90 32 chr13 33775489 33775645 -85969253 - MLT1K LTR MaLR -394 194 30 504 276 184 44 chr13 33776507 33776822 -85968076 - L2 LINE L2 -1634 1680 1322 2488 71 0 3 chr13 33777130 33777438 -85967460 - AluY SINE Alu -4 307 1 289 358 0 0 chr13 33777460 33777541 -85967357 + L2 LINE L2 3233 3313 0 21 36 0 0 chr13 33777716 33777744 -85967154 + AT_rich Low_complexity Low_complexity 1 28 0 2176 87 38 0 chr13 33778369 33778658 -85966240 - AluSc SINE Alu -9 300 1 25 65 0 0 chr13 33779184 33779230 -85965668 + AT_rich Low_complexity Low_complexity 1 46 0 2456 70 0 0 chr13 33779286 33779587 -85965311 + AluY SINE Alu 1 301 -10 14091 129 24 11 chr13 33782094 33784356 -85960542 + Tigger1 DNA MER2_type 39 2269 -149 279 0 0 0 chr13 33784356 33784387 -85960511 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2088 124 0 3 chr13 33784390 33784673 -85960225 - AluSx SINE Alu -30 282 1 14091 129 24 11 chr13 33784673 33784754 -85960144 + Tigger1 DNA MER2_type 2270 2418 0 3032 278 72 44 chr13 33784784 33785242 -85959656 - L2 LINE L2 0 3313 2869 613 67 11 0 chr13 33785242 33785331 -85959567 + L1PB2 LINE L1 6060 6149 -2 3032 278 72 44 chr13 33785331 33786310 -85958588 - L2 LINE L2 -444 2869 1836 671 292 118 32 chr13 33786348 33787203 -85957695 + L1ME3 LINE L1 4180 5108 -1038 442 256 11 11 chr13 33787214 33787394 -85957504 + GA-rich Low_complexity Low_complexity 1 180 0 324 200 29 19 chr13 33787407 33787512 -85957386 + GA-rich Low_complexity Low_complexity 2 107 0 1207 265 50 12 chr13 33787513 33788228 -85956670 + L1ME3 LINE L1 5122 5862 -300 1480 274 56 2 chr13 33788358 33788789 -85956109 - LTR16B LTR ERVL 0 464 11 1616 182 66 3 chr13 33789094 33789429 -85955469 + MSTA LTR MaLR 1 356 -72 2123 290 135 23 chr13 33789429 33790411 -85954487 - L2 LINE L2 -1687 1627 536 880 288 24 33 chr13 33790492 33790932 -85953966 - L1MC5 LINE L1 -44 7917 7551 405 0 0 0 chr13 33790932 33790977 -85953921 + (CA)n Simple_repeat Simple_repeat 2 46 0 880 288 24 33 chr13 33790977 33791266 -85953632 - L1MC5 LINE L1 -410 7551 7261 236 385 10 29 chr13 33792260 33792364 -85952534 + MER5B DNA MER1_type 15 116 -62 1293 201 8 13 chr13 33792823 33793062 -85951836 + MER8 DNA MER2_type 2 239 0 1135 130 0 0 chr13 33793065 33793226 -85951672 - AluSq SINE Alu -13 300 140 23 0 0 0 chr13 33793251 33793274 -85951624 + AT_rich Low_complexity Low_complexity 1 23 0 1763 96 50 27 chr13 33793817 33794078 -85950820 + AluSx SINE Alu 1 267 -45 1425 253 74 81 chr13 33794871 33795556 -85949342 + L2 LINE L2 2520 3200 -113 2177 159 68 27 chr13 33795556 33795965 -85948933 + MSTB LTR MaLR 1 426 0 1425 253 74 81 chr13 33795965 33796075 -85948823 + L2 LINE L2 3200 3309 -4 310 233 88 82 chr13 33796889 33797002 -85947896 + HAL1b LINE L1 981 1097 -251 2561 105 14 3 chr13 33797002 33797373 -85947525 + THE1C LTR MaLR 1 375 0 310 233 88 82 chr13 33797373 33797418 -85947480 + HAL1b LINE L1 1097 1140 -208 204 246 49 49 chr13 33798474 33798535 -85946363 + MIR SINE MIR 69 129 -133 1923 207 82 29 chr13 33798809 33799297 -85945601 - L1MA9 LINE L1 0 6312 5785 342 115 0 0 chr13 33799297 33799349 -85945549 + (TA)n Simple_repeat Simple_repeat 2 53 0 1923 207 82 29 chr13 33799349 33799455 -85945443 - L1MA9 LINE L1 -527 5785 5686 2551 156 57 2 chr13 33800242 33800698 -85944200 - MER31A LTR ERV1 0 485 5 273 340 7 0 chr13 33801904 33802051 -85942847 - MLT1G1-int LTR MaLR -1221 150 3 934 256 142 47 chr13 33802056 33802458 -85942440 - MLT1G1 LTR MaLR -2 593 114 678 324 17 7 chr13 33802459 33802876 -85942022 - L1M4 LINE L1 -1987 4159 3739 313 310 78 23 chr13 33802881 33803010 -85941888 + L2 LINE L2 3136 3271 -1 396 0 0 0 chr13 33803236 33803280 -85941618 + (CA)n Simple_repeat Simple_repeat 2 45 0 187 241 56 37 chr13 33804094 33804148 -85940750 + L2 LINE L2 3251 3305 -8 369 357 5 55 chr13 33804307 33804506 -85940392 + MIR SINE MIR 1 189 -73 310 0 67 0 chr13 33805559 33805604 -85939294 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1838 119 58 0 chr13 33805609 33805870 -85939028 - AluSx SINE Alu -36 276 1 262 197 121 0 chr13 33806646 33806712 -85938186 + MLT1L LTR MaLR 137 210 -405 3122 64 0 12 chr13 33806713 33807136 -85937762 + L1PA8A LINE L1 5686 6103 -28 954 265 90 24 chr13 33807162 33807539 -85937359 + MLT1L LTR MaLR 196 597 -18 714 283 188 14 chr13 33807550 33807843 -85937055 + L3 LINE CR1 421 764 -813 216 250 0 0 chr13 33808162 33808214 -85936684 + (TGAA)n Simple_repeat Simple_repeat 2 53 0 1673 143 130 69 chr13 33808449 33808749 -85936149 + MSTB LTR MaLR 27 356 -70 2370 91 0 3 chr13 33808749 33809056 -85935842 - AluSg SINE Alu 0 310 5 1673 143 130 69 chr13 33809056 33809132 -85935766 + MSTB LTR MaLR 356 426 0 21 36 0 0 chr13 33809816 33809844 -85935054 + AT_rich Low_complexity Low_complexity 1 28 0 1161 233 72 22 chr13 33810074 33810434 -85934464 + MLT1G LTR MaLR 10 387 -203 908 182 109 0 chr13 33810434 33810599 -85934299 - MER5A DNA MER1_type -4 185 3 255 266 13 51 chr13 33810631 33810710 -85934188 + MLT1G LTR MaLR 435 510 -80 576 266 128 44 chr13 33810974 33811200 -85933698 + MIR SINE MIR 7 251 -11 290 257 76 29 chr13 33811212 33811317 -85933581 + MIR SINE MIR 82 191 -71 2114 146 0 0 chr13 33811542 33811844 -85933054 + AluSq SINE Alu 1 302 -11 308 350 101 19 chr13 33812367 33812460 -85932438 + L1ME4a LINE L1 5022 5106 -1040 204 40 0 0 chr13 33812460 33812485 -85932413 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 308 350 101 19 chr13 33812485 33812648 -85932250 + L1ME4a LINE L1 5106 5299 -847 271 290 106 27 chr13 33812835 33813166 -85931732 + L1ME4a LINE L1 5548 5904 -217 418 244 38 23 chr13 33813191 33813322 -85931576 + MER117 DNA MER1_type 46 178 -19 258 32 0 0 chr13 33813392 33813423 -85931475 + (TG)n Simple_repeat Simple_repeat 2 32 0 1861 145 16 13 chr13 33813498 33813801 -85931097 - AluSx SINE Alu -8 304 1 982 234 51 74 chr13 33813822 33814380 -85930518 + MER39 LTR ERV1 1 707 0 345 296 54 48 chr13 33815002 33815188 -85929710 + MIR SINE MIR 33 219 -43 206 302 0 0 chr13 33817708 33817751 -85927147 - L2 LINE L2 -12 3301 3259 298 327 150 19 chr13 33817895 33818310 -85926588 - L2 LINE L2 -215 3057 2586 1036 346 129 32 chr13 33819090 33819880 -85925018 - L2 LINE L2 -696 2618 1752 2757 152 0 0 chr13 33819898 33820326 -85924572 - MSTC LTR MaLR 0 428 1 200 128 0 106 chr13 33820489 33820536 -85924362 + MIR SINE MIR 109 150 -112 344 263 113 44 chr13 33820801 33820961 -85923937 - MIR SINE MIR -71 191 21 201 94 0 0 chr13 33821392 33821424 -85923474 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1176 183 55 126 chr13 33821507 33821927 -85922971 - MLT1B LTR MaLR 0 390 1 385 322 63 44 chr13 33821970 33822227 -85922671 + L1MEd LINE L1 997 1346 -1144 1469 155 3 94 chr13 33822746 33823084 -85921814 + AluJb SINE Alu 1 310 0 751 311 54 37 chr13 33823527 33824358 -85920540 + L1M4 LINE L1 3714 4558 -1588 1798 123 93 4 chr13 33824365 33824633 -85920265 + AluSx SINE Alu 1 292 -20 437 317 84 51 chr13 33824709 33825168 -85919730 + L1M2 LINE L1 4628 5116 -1030 2226 115 0 0 chr13 33825168 33825463 -85919435 + AluSq SINE Alu 9 303 -10 437 317 84 51 chr13 33825463 33825640 -85919258 + L1M2 LINE L1 5116 5286 -860 258 256 44 44 chr13 33825643 33825803 -85919095 + L1M2 LINE L1 5313 5472 -831 400 298 31 0 chr13 33825987 33826178 -85918720 + L1MC4a LINE L1 5694 5890 -1918 25 51 0 0 chr13 33826178 33826217 -85918681 + AT_rich Low_complexity Low_complexity 1 39 0 1009 167 154 14 chr13 33826257 33826478 -85918420 + AluJo SINE Alu 50 301 -11 305 329 169 41 chr13 33826534 33826878 -85918020 + L2 LINE L2 2926 3313 0 293 375 39 0 chr13 33827600 33827728 -85917170 - L2 LINE L2 0 3313 3181 653 257 36 85 chr13 33828064 33828395 -85916503 + MLT1K LTR MaLR 155 469 -119 25 0 0 0 chr13 33829781 33829806 -85915092 + AT_rich Low_complexity Low_complexity 1 25 0 352 227 242 0 chr13 33831373 33831505 -85913393 + MIR SINE MIR 72 235 -27 1544 202 0 17 chr13 33831741 33832033 -85912865 - AluJo SINE Alu -23 289 3 1723 130 14 51 chr13 33832081 33832373 -85912525 + AluJb SINE Alu 2 282 -30 2072 120 0 0 chr13 33832515 33832789 -85912109 + AluSx SINE Alu 6 279 -33 305 138 0 17 chr13 33832798 33832856 -85912042 + (GGGA)n Simple_repeat Simple_repeat 3 59 0 * 1167 88 18 9 chr13 33832842 33833171 -85911727 + (GAAA)n Simple_repeat Simple_repeat 1 333 0 215 143 41 0 chr13 33833160 33833209 -85911689 + GA-rich Low_complexity Low_complexity 3 53 0 * 333 301 183 20 chr13 33834360 33834513 -85910385 - MER5B DNA MER1_type 0 178 1 1038 191 4 71 chr13 33834643 33834868 -85910030 - MER58A DNA MER1_type -11 213 4 27 49 0 0 chr13 33834923 33834964 -85909934 + AT_rich Low_complexity Low_complexity 1 41 0 2324 103 0 0 chr13 33835019 33835310 -85909588 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr13 33835314 33835336 -85909562 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 33835448 33835469 -85909429 + AT_rich Low_complexity Low_complexity 1 21 0 330 273 149 0 chr13 33835618 33835739 -85909159 - MER117 DNA MER1_type -57 140 2 655 241 189 40 chr13 33836181 33836430 -85908468 - MLT1H LTR MaLR -193 356 71 314 327 29 27 chr13 33836955 33837108 -85907790 - MIR3 SINE MIR -55 153 15 298 242 0 0 chr13 33837174 33837236 -85907662 - MER58A DNA MER1_type 0 224 163 * 635 292 15 15 chr13 33837235 33837437 -85907461 - MER58A DNA MER1_type -20 204 3 325 290 98 63 chr13 33837466 33837561 -85907337 + MLT1H LTR MaLR 24 114 -435 1837 159 27 71 chr13 33837561 33837969 -85906929 + MLT1B LTR MaLR 1 390 0 325 290 98 63 chr13 33837969 33838269 -85906629 + MLT1H LTR MaLR 114 546 -3 309 26 0 0 chr13 33838717 33838755 -85906143 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1310 146 84 62 chr13 33838755 33839029 -85905869 - AluJo SINE Alu -32 280 1 1963 177 101 30 chr13 33839124 33839254 -85905644 + MER77 LTR ERV1 182 301 -304 2065 138 0 20 chr13 33839254 33839558 -85905340 + AluY SINE Alu 1 298 -13 1963 177 101 30 chr13 33839558 33839823 -85905075 + MER77 LTR ERV1 301 605 0 374 322 47 13 chr13 33840132 33840281 -85904617 + MIR SINE MIR 50 203 -59 22 35 0 0 chr13 33841034 33841063 -85903835 + AT_rich Low_complexity Low_complexity 1 29 0 1673 166 43 0 chr13 33841068 33841346 -85903552 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr13 33841347 33841369 -85903529 + AT_rich Low_complexity Low_complexity 1 22 0 939 191 0 0 chr13 33841471 33841647 -85903251 - AluSg/x SINE Alu 0 308 133 2294 101 0 3 chr13 33841647 33841944 -85902954 - AluSq SINE Alu -17 296 1 225 0 0 0 chr13 33842534 33842559 -85902339 + (T)n Simple_repeat Simple_repeat 1 25 0 216 234 146 135 chr13 33842676 33842721 -85902177 - MIR3 SINE MIR -12 196 153 2146 109 24 0 chr13 33842721 33843039 -85901859 + AluSq SINE Alu 1 313 0 216 234 146 135 chr13 33843039 33843185 -85901713 - MIR3 SINE MIR -55 153 3 185 129 0 32 chr13 33843348 33843379 -85901519 - MER5A DNA MER1_type -116 73 44 235 121 0 0 chr13 33844031 33844064 -85900834 + Alu SINE Alu 1 33 -268 207 0 0 0 chr13 33844075 33844098 -85900800 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1990 125 3 26 chr13 33844127 33844432 -85900466 + AluSx SINE Alu 1 298 -14 1533 139 132 0 chr13 33844595 33844853 -85900045 + AluSx SINE Alu 5 296 -16 32 67 0 0 chr13 33844853 33844913 -85899985 + AT_rich Low_complexity Low_complexity 1 60 0 2417 46 0 0 chr13 33845827 33846155 -85898743 - AluY SINE Alu 0 328 1 300 256 25 13 chr13 33848010 33848117 -85896781 - L2 LINE L2 -281 2991 2883 297 0 0 0 chr13 33848185 33848218 -85896680 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2918 26 0 0 chr13 33848223 33848564 -85896334 - L1PA3 LINE L1 0 6155 5815 630 326 42 24 chr13 33849096 33849352 -85895546 - MER102b DNA MER1_type -1088 340 75 243 0 0 0 chr13 33849352 33849379 -85895519 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 630 326 42 24 chr13 33849379 33849456 -85895442 - MER102b DNA MER1_type -1353 75 1 399 275 37 0 chr13 33849539 33849648 -85895250 + MER117 DNA MER1_type 1 113 -84 1373 189 126 31 chr13 33850762 33851143 -85893755 + LTR37A LTR ERV1 8 424 -2 218 279 12 47 chr13 33852038 33852124 -85892774 - L2 LINE L2 -74 3198 3116 2466 194 59 2 chr13 33853053 33853544 -85891354 + LTR53 LTR ERVL 1 519 0 493 299 150 71 chr13 33854164 33855189 -85889709 + L2 LINE L2 1700 2805 -509 604 239 90 7 chr13 33855220 33855375 -85889523 + MIR SINE MIR 75 242 -20 810 174 155 0 chr13 33855377 33855532 -85889366 - AluJb SINE Alu -1 311 133 264 30 0 0 chr13 33855535 33855568 -85889330 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 690 174 0 33 chr13 33855570 33855754 -85889144 + CT-rich Low_complexity Low_complexity 3 180 0 5819 155 8 4 chr13 33855884 33857116 -85887782 + L1M1 LINE L1 4303 5538 -743 5998 112 12 8 chr13 33857122 33858091 -85886807 + L1PA14 LINE L1 5182 6152 -9 277 308 10 10 chr13 33858091 33858195 -85886703 + MIR SINE MIR 158 261 -1 400 226 140 43 chr13 33859158 33859322 -85885576 - MIR SINE MIR -77 185 6 226 399 59 20 chr13 33860297 33860450 -85884448 + L2 LINE L2 2933 3091 -181 31 26 0 0 chr13 33860710 33860748 -85884150 + AT_rich Low_complexity Low_complexity 1 38 0 1408 199 24 3 chr13 33860751 33861047 -85883851 + L1MB4 LINE L1 5787 6088 -92 * 2568 246 56 13 chr13 33861045 33862886 -85882012 + L1MD2 LINE L1 4101 6082 -277 562 150 39 0 chr13 33862934 33863061 -85881837 + Charlie5 DNA MER1_type 2454 2585 -27 1953 134 70 22 chr13 33863397 33863755 -85881143 - THE1C LTR MaLR 0 375 1 2952 168 28 20 chr13 33864123 33865020 -85879878 + L1P4 LINE L1 4697 5609 -557 1742 176 0 28 chr13 33865020 33865348 -85879550 - AluSx SINE Alu 0 320 1 2952 168 28 20 chr13 33865348 33865497 -85879401 + L1P4 LINE L1 5609 5755 -411 299 247 59 12 chr13 33867280 33867365 -85877533 - MIR SINE MIR -10 252 164 * 430 256 196 25 chr13 33867356 33867555 -85877343 + MIR SINE MIR 30 262 0 360 273 73 69 chr13 33867591 33867866 -85877032 + MARNA DNA Mariner 32 307 -279 225 323 65 0 chr13 33868666 33868728 -85876170 - L2 LINE L2 -3 3310 3245 287 384 100 26 chr13 33870871 33871290 -85873608 + L2 LINE L2 2347 2796 -518 244 230 40 80 chr13 33871605 33871705 -85873193 + L2 LINE L2 3177 3272 0 436 286 52 11 chr13 33871819 33871995 -85872903 - MIR SINE MIR -31 231 45 196 296 37 0 chr13 33872016 33872070 -85872828 + L2 LINE L2 3213 3268 -4 2330 107 0 0 chr13 33872658 33872968 -85871930 - AluSx SINE Alu -2 310 1 272 315 149 31 chr13 33873506 33873728 -85871170 + L2 LINE L2 3019 3266 -47 23 0 0 0 chr13 33874010 33874033 -85870865 + AT_rich Low_complexity Low_complexity 1 23 0 893 268 172 27 chr13 33874466 33875036 -85869862 - L2 LINE L2 -126 3187 2536 556 215 23 105 chr13 33875352 33875571 -85869327 + MER58C DNA MER1_type 3 203 -12 21 0 0 0 chr13 33876588 33876609 -85868289 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 33876630 33876658 -85868240 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr13 33877786 33877808 -85867090 + (GA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr13 33878716 33878737 -85866161 + AT_rich Low_complexity Low_complexity 1 21 0 494 299 35 15 chr13 33879757 33879954 -85864944 + L1ME LINE L1 138 338 -5867 930 261 94 36 chr13 33880045 33880785 -85864113 + L1ME LINE L1 830 1588 -4627 1922 276 81 53 chr13 33881209 33882374 -85862524 - L2 LINE L2 0 3313 2023 2011 170 18 30 chr13 33882603 33882998 -85861900 + MLT1B LTR MaLR 1 390 0 519 304 60 57 chr13 33883105 33883703 -85861195 - HAL1b LINE L1 -689 659 60 24 32 0 0 chr13 33883709 33883740 -85861158 + AT_rich Low_complexity Low_complexity 1 31 0 2373 241 81 29 chr13 33883802 33883992 -85860906 - L1MEc LINE L1 -3255 2960 2781 1710 177 3 7 chr13 33883992 33884286 -85860612 - AluJo SINE Alu -19 293 1 2373 241 81 29 chr13 33884286 33885314 -85859584 - L1MEc LINE L1 -3434 2781 1734 759 242 0 25 chr13 33885456 33885654 -85859244 - L1MB7 LINE L1 -8 6176 5984 1559 177 7 18 chr13 33885772 33886049 -85858849 - AluJo SINE Alu -24 288 15 898 231 136 8 chr13 33886754 33887005 -85857893 + MER102a DNA MER1_type 43 325 -5 228 386 20 0 chr13 33887005 33887106 -85857792 - MIR3 SINE MIR -48 160 58 181 321 60 24 chr13 33887187 33887271 -85857627 + MIR SINE MIR 103 189 -73 1939 134 0 11 chr13 33890568 33890888 -85854010 - AluSx SINE Alu 0 317 1 1615 183 3 7 chr13 33891684 33891973 -85852925 + AluJb SINE Alu 1 288 -24 213 382 10 10 chr13 33892078 33892180 -85852718 + MIR SINE MIR 11 112 -150 184 212 0 0 chr13 33892669 33892702 -85852196 - MIR SINE MIR -12 250 218 923 286 29 26 chr13 33892707 33893056 -85851842 - L1MA9 LINE L1 -25 6287 5938 461 286 9 0 chr13 33893090 33893202 -85851696 - MIR SINE MIR -140 122 10 303 330 70 35 chr13 33893115 33893345 -85851553 + MIR SINE MIR 15 252 -10 * 21 36 0 0 chr13 33894118 33894146 -85850752 + AT_rich Low_complexity Low_complexity 1 28 0 374 337 102 76 chr13 33895253 33895793 -85849105 + L2 LINE L2 2220 2773 -541 439 304 123 27 chr13 33896303 33896596 -85848302 - MLT1I LTR MaLR -9 400 80 2035 93 0 0 chr13 33896803 33897072 -85847826 + AluSc SINE Alu 36 304 -5 530 148 42 28 chr13 33899805 33899947 -85844951 - L1MA4A LINE L1 -3 6300 6157 7286 39 1 0 chr13 33899947 33901389 -85843509 - L1PA4 LINE L1 -4 6151 4709 23371 40 13 2 chr13 33901389 33904312 -85840586 + L1PA4 LINE L1 1741 4696 -1450 1307 186 4 0 chr13 33904312 33904565 -85840333 - L1MA4A LINE L1 -136 6167 5914 2897 156 21 2 chr13 33904567 33905248 -85839650 - L1MA4A LINE L1 -530 5773 5082 274 279 0 0 chr13 33905250 33905329 -85839569 + L1MA4A LINE L1 5021 5099 -1047 30 0 0 0 chr13 33905329 33905359 -85839539 + AT_rich Low_complexity Low_complexity 1 30 0 7776 15 0 0 chr13 33906701 33908119 -85836779 + L1PA2 LINE L1 4757 6174 0 306 279 22 59 chr13 33908761 33908897 -85836001 + L1ME1 LINE L1 6 136 -5934 3186 250 75 24 chr13 33909460 33911374 -85833524 + L1ME1 LINE L1 4061 6076 -24 21 36 0 0 chr13 33911377 33911405 -85833493 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 33912752 33912796 -85832102 + AT_rich Low_complexity Low_complexity 1 44 0 34 84 0 0 chr13 33913313 33913396 -85831502 + AT_rich Low_complexity Low_complexity 1 83 0 22 70 0 0 chr13 33916610 33916653 -85828245 + AT_rich Low_complexity Low_complexity 1 43 0 1089 247 51 8 chr13 33916701 33916956 -85827942 + Tigger7 DNA MER2_type 2 267 -466 259 160 20 0 chr13 33916970 33917020 -85827878 + Tigger7 DNA MER2_type 2537 2587 0 1118 123 0 23 chr13 33917052 33917223 -85827675 - AluSg/x SINE Alu -12 298 132 2290 86 0 7 chr13 33917225 33917526 -85827372 - AluY SINE Alu -12 299 1 440 162 30 0 chr13 33918141 33918240 -85826658 + L1MB5 LINE L1 5743 5844 -330 273 252 35 48 chr13 33918711 33918854 -85826044 - L1ME LINE L1 -674 5488 5352 2937 202 40 38 chr13 33918864 33919677 -85825221 - L1MB7 LINE L1 -162 6022 5207 1064 277 101 48 chr13 33919683 33920667 -85824231 - L1M LINE L1 -733 5429 4310 259 86 0 0 chr13 33920667 33920702 -85824196 - U2 snRNA snRNA -153 35 1 1064 277 101 48 chr13 33920702 33921231 -85823667 - L1M LINE L1 -1852 4310 3810 906 321 176 29 chr13 33921231 33922508 -85822390 + L2 LINE L2 1820 3305 -8 707 305 60 4 chr13 33922973 33923317 -85821581 - LTR33 LTR ERVL -2 519 102 359 306 52 8 chr13 33923393 33923527 -85821371 - MLT1L LTR MaLR -112 503 364 204 330 85 0 chr13 33923944 33924038 -85820860 - L3 LINE CR1 -157 1420 1319 22 0 0 0 chr13 33924319 33924341 -85820557 + AT_rich Low_complexity Low_complexity 1 22 0 234 318 32 86 chr13 33925564 33925784 -85819114 + L2 LINE L2 3105 3312 -1 592 251 141 31 chr13 33926422 33926713 -85818185 - MER33 DNA MER1_type -1 323 1 228 287 32 32 chr13 33926804 33926898 -85818000 - L2 LINE L2 -1081 2233 2140 27 62 0 0 chr13 33927848 33927896 -85817002 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr13 33928060 33928082 -85816816 + AT_rich Low_complexity Low_complexity 1 22 0 1395 6 0 0 chr13 33928083 33928241 -85816657 - L1HS LINE L1 -1 6154 5997 440 83 0 0 chr13 33928236 33928296 -85816602 + L1P LINE L1 5349 5408 -747 * 37 69 0 0 chr13 33928532 33928604 -85816294 + AT_rich Low_complexity Low_complexity 1 72 0 30 0 0 0 chr13 33928659 33928689 -85816209 + AT_rich Low_complexity Low_complexity 1 30 0 292 273 50 8 chr13 33929462 33929583 -85815315 - L1ME4a LINE L1 -49 6072 5947 2065 78 0 4 chr13 33929935 33930204 -85814694 - AluY SINE Alu -4 307 40 218 274 292 0 chr13 33930471 33930584 -85814314 - MIR SINE MIR -111 151 6 3473 209 49 59 chr13 33930627 33931615 -85813283 - L1MD3 LINE L1 -6 8028 7065 462 36 0 0 chr13 33931615 33931671 -85813227 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 3473 209 49 59 chr13 33931671 33931713 -85813185 - L1MD3 LINE L1 -969 7065 7024 905 224 52 9 chr13 33931719 33931929 -85812969 - MER58A DNA MER1_type -5 219 1 1613 235 145 0 chr13 33931939 33932429 -85812469 - L1MC4 LINE L1 -1037 7005 6445 23 86 0 0 chr13 33932798 33932856 -85812042 + AT_rich Low_complexity Low_complexity 1 58 0 28 48 0 0 chr13 33933344 33933386 -85811512 + AT_rich Low_complexity Low_complexity 1 42 0 500 256 49 79 chr13 33933780 33933983 -85810915 - MIR SINE MIR 0 262 66 282 275 84 42 chr13 33934301 33934443 -85810455 + L1ME3A LINE L1 6018 6165 -5 31 68 0 0 chr13 33934798 33934857 -85810041 + AT_rich Low_complexity Low_complexity 1 59 0 34 65 0 0 chr13 33935291 33935353 -85809545 + AT_rich Low_complexity Low_complexity 1 62 0 31 26 0 0 chr13 33935524 33935562 -85809336 + AT_rich Low_complexity Low_complexity 1 38 0 38 51 0 0 chr13 33936197 33936256 -85808642 + AT_rich Low_complexity Low_complexity 1 59 0 238 355 90 37 chr13 33936825 33937146 -85807752 - L2 LINE L2 -466 2848 2511 2313 68 0 36 chr13 33937611 33937918 -85806980 - AluY SINE Alu -15 296 1 293 213 67 27 chr13 33937936 33938011 -85806887 + MER116 DNA Mariner 3 80 0 186 417 32 6 chr13 33938070 33938226 -85806672 + L3 LINE CR1 617 776 -801 1725 160 20 23 chr13 33939130 33939436 -85805462 - AluSx SINE Alu -7 305 1 4159 34 2 0 chr13 33940257 33940757 -85804141 + L1PA5 LINE L1 5650 6150 -4 696 189 0 23 chr13 33941042 33941174 -85803724 + AluSq/x SINE Alu 5 133 -180 22 70 0 0 chr13 33941464 33941507 -85803391 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr13 33941743 33941776 -85803122 + AT_rich Low_complexity Low_complexity 1 33 0 268 214 0 78 chr13 33942506 33942609 -85802289 - L1MC4 LINE L1 -1334 6708 6614 232 250 0 48 chr13 33942539 33942623 -85802275 + L1MC4 LINE L1 6624 6703 -1339 * 239 315 0 0 chr13 33942625 33942717 -85802181 - L1MC4 LINE L1 -1335 6707 6616 * 306 208 0 62 chr13 33942643 33942739 -85802159 + L1MC4 LINE L1 6614 6703 -1339 225 287 0 43 chr13 33942757 33942851 -85802047 + L1MC4 LINE L1 6614 6703 -1339 330 26 0 0 chr13 33943851 33943890 -85801008 + (CATA)n Simple_repeat Simple_repeat 2 40 0 589 155 19 0 chr13 33943927 33944030 -85800868 + FLAM_A SINE Alu 24 128 -14 1783 126 69 39 chr13 33944053 33944417 -85800481 + THE1C LTR MaLR 1 375 0 2156 100 0 10 chr13 33944666 33944965 -85799933 + AluSg SINE Alu 1 296 -14 474 278 114 13 chr13 33945356 33945583 -85799315 + HAL1b LINE L1 599 848 -500 392 312 21 64 chr13 33945982 33946115 -85798783 + L1M4 LINE L1 2189 2309 -3837 1302 43 0 0 chr13 33946115 33946278 -85798620 + L1PA3 LINE L1 5993 6155 0 392 312 21 64 chr13 33946278 33946378 -85798520 + L1M4 LINE L1 2309 2412 -3734 1418 84 133 0 chr13 33947023 33947248 -85797650 + L1PA4 LINE L1 5896 6150 -5 450 226 23 15 chr13 33947275 33947408 -85797490 + L1ME2 LINE L1 27 160 -5959 714 264 67 17 chr13 33947468 33947813 -85797085 + L1ME2 LINE L1 892 1253 -4866 23 33 0 0 chr13 33947895 33947925 -85796973 + AT_rich Low_complexity Low_complexity 1 30 0 907 130 34 0 chr13 33948128 33948274 -85796624 + L1MC1 LINE L1 6182 6332 -1 24 0 0 0 chr13 33948463 33948487 -85796411 + AT_rich Low_complexity Low_complexity 1 24 0 278 268 102 19 chr13 33948731 33949048 -85795850 + L1ME2 LINE L1 2662 3014 -3115 452 331 91 15 chr13 33949376 33949705 -85795193 + L1ME2 LINE L1 3756 4109 -2020 734 259 83 30 chr13 33949715 33950016 -85794882 + L1MB7 LINE L1 2644 2960 -3186 1845 241 118 7 chr13 33950027 33950174 -85794724 + L1MB7 LINE L1 5522 5651 -533 1975 136 0 7 chr13 33950174 33950489 -85794409 - AluSx SINE Alu 0 313 1 1845 241 118 7 chr13 33950489 33950925 -85793973 + L1MB7 LINE L1 5651 6171 -13 883 274 126 29 chr13 33950930 33951783 -85793115 + L1ME2 LINE L1 4993 5937 -288 344 339 95 29 chr13 33952097 33952611 -85792287 + L1ME4a LINE L1 2372 2919 -3210 305 322 89 23 chr13 33953482 33953696 -85791202 + L1ME4a LINE L1 4462 4689 -1440 1674 230 130 54 chr13 33954516 33955198 -85789700 + HAL1b LINE L1 256 1033 -315 2148 102 0 0 chr13 33955198 33955493 -85789405 + AluY SINE Alu 1 295 -16 1674 230 130 54 chr13 33955493 33955769 -85789129 + HAL1b LINE L1 1033 1287 -61 397 272 124 54 chr13 33956254 33956489 -85788409 + L1ME4a LINE L1 5508 5725 -379 2115 133 0 0 chr13 33956489 33956789 -85788109 - AluSx SINE Alu -12 300 1 397 272 124 54 chr13 33956789 33957086 -85787812 + L1ME4a LINE L1 5725 6077 -27 2232 125 0 0 chr13 33957087 33957392 -85787506 - AluSx SINE Alu -6 306 2 252 0 0 0 chr13 33957777 33957805 -85787093 + (T)n Simple_repeat Simple_repeat 1 28 0 1411 183 47 14 chr13 33958066 33958345 -85786553 - AluJo SINE Alu -14 288 1 986 311 101 24 chr13 33958793 33959211 -85785687 - MLT1J2 LTR MaLR 0 450 1 2266 104 7 0 chr13 33959290 33959597 -85785301 - AluSg SINE Alu -1 309 1 24 0 0 0 chr13 33960557 33960581 -85784317 + AT_rich Low_complexity Low_complexity 1 24 0 364 341 42 47 chr13 33960871 33961085 -85783813 - L3 LINE CR1 -57 1520 1308 2174 233 103 15 chr13 33961100 33961714 -85783184 + Cheshire DNA MER1_type 40 707 -1713 877 107 0 129 chr13 33961775 33961953 -85782945 + AluJb SINE Alu 157 311 -1 381 284 115 7 chr13 33961993 33962141 -85782757 + MER58B DNA MER1_type 22 185 -156 2315 160 8 15 chr13 33962165 33962564 -85782334 - MER41E LTR ERV1 -116 396 1 1482 249 65 27 chr13 33962653 33963174 -85781724 - MER41E-int LTR ERV1 -1 6675 6135 1006 350 34 27 chr13 33963196 33964012 -85780886 - HUERS-P3 LTR ERV1 -3720 4036 3215 260 176 20 0 chr13 33964570 33964621 -85780277 - HUERS-P3 LTR ERV1 -2803 2151 2100 1055 295 35 47 chr13 33964745 33965363 -85779535 - HUERS-P3 LTR ERV1 -3958 2718 1854 260 267 89 52 chr13 33965449 33965584 -85779314 - HUERS-P3 LTR ERV1 -6036 1720 1581 335 309 0 16 chr13 33965850 33965973 -85778925 - HUERS-P3 LTR ERV1 -7114 1805 1685 1300 151 41 5 chr13 33966103 33966322 -85778576 - MER41E LTR ERV1 0 512 286 468 240 147 7 chr13 33966322 33966472 -85778426 + MER58B DNA MER1_type 171 341 0 1135 167 52 0 chr13 33966772 33966982 -85777916 - MER58A DNA MER1_type -3 221 1 300 383 29 40 chr13 33967042 33967319 -85777579 - L3 LINE CR1 -304 1273 1000 296 356 92 0 chr13 33967326 33967500 -85777398 - MIR SINE MIR -1 261 72 244 333 108 0 chr13 33967988 33968099 -85776799 + L1MD3 LINE L1 6722 6844 -1151 342 0 0 0 chr13 33968827 33968865 -85776033 + (AGTAG)n Simple_repeat Simple_repeat 1 38 0 1886 157 13 7 chr13 33968867 33969173 -85775725 + AluSx SINE Alu 1 308 -4 2347 80 3 0 chr13 33969295 33969595 -85775303 + AluSp SINE Alu 1 301 -12 284 314 78 0 chr13 33970329 33970431 -85774467 - MIR3 SINE MIR -7 201 92 560 154 0 0 chr13 33970775 33970866 -85774032 + MER33 DNA MER1_type 19 109 -215 2388 67 17 3 chr13 33971067 33971366 -85773532 - AluY SINE Alu -8 303 1 222 342 18 45 chr13 33971616 33971727 -85773171 - MIR SINE MIR -46 216 109 276 226 36 24 chr13 33971999 33972083 -85772815 + MER117 DNA MER1_type 10 94 -103 424 295 85 8 chr13 33972608 33972737 -85772161 - L2 LINE L2 0 3313 3175 1677 169 3 22 chr13 33972877 33973191 -85771707 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr13 33973294 33973315 -85771583 + AT_rich Low_complexity Low_complexity 1 21 0 2093 127 13 3 chr13 33973374 33973673 -85771225 + AluSp SINE Alu 1 302 -11 27 0 0 0 chr13 33974402 33974429 -85770469 + AT_rich Low_complexity Low_complexity 1 27 0 241 287 200 7 chr13 33974694 33974844 -85770054 - L2 LINE L2 -8 3305 3127 262 318 12 0 chr13 33975446 33975531 -85769367 - MIR3 SINE MIR -11 197 112 807 249 31 0 chr13 33975999 33976192 -85768706 - MER58A DNA MER1_type -23 201 3 212 204 21 129 chr13 33976196 33976289 -85768609 + MIR3 SINE MIR 113 195 -13 569 205 99 33 chr13 33978240 33978391 -85766507 + MIR3 SINE MIR 47 207 -1 426 191 117 0 chr13 33978542 33978636 -85766262 - MIR SINE MIR -6 256 152 295 222 0 20 chr13 33980561 33980660 -85764238 + CT-rich Low_complexity Low_complexity 2 98 0 430 331 39 39 chr13 33980664 33980924 -85763974 - MLT1L LTR MaLR -355 260 1 1372 149 141 4 chr13 33981404 33981666 -85763232 + AluJo SINE Alu 1 298 -14 28 0 0 0 chr13 33982257 33982285 -85762613 + AT_rich Low_complexity Low_complexity 1 28 0 2096 142 7 0 chr13 33983707 33984017 -85760881 - AluSx SINE Alu 0 312 1 600 243 7 7 chr13 33985144 33985280 -85759618 - MER58B DNA MER1_type 0 341 206 37 81 0 0 chr13 33986883 33986969 -85757929 + AT_rich Low_complexity Low_complexity 1 86 0 21 36 0 0 chr13 33987323 33987351 -85757547 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 33988395 33988418 -85756480 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 33989178 33989200 -85755698 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr13 33989619 33989664 -85755234 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr13 33990488 33990511 -85754387 + AT_rich Low_complexity Low_complexity 1 23 0 963 256 27 16 chr13 33990663 33990921 -85753977 - MIR SINE MIR 0 262 2 30 59 0 0 chr13 33991118 33991169 -85753729 + AT_rich Low_complexity Low_complexity 1 51 0 244 314 148 30 chr13 33991708 33991877 -85753021 + MIR SINE MIR 4 192 -70 325 387 46 29 chr13 33992123 33992361 -85752537 + L2 LINE L2 2813 3054 -218 2274 92 3 0 chr13 33992830 33993123 -85751775 - AluSc SINE Alu -15 294 1 546 307 56 30 chr13 33993161 33993392 -85751506 + MIR SINE MIR 20 256 -6 317 344 104 11 chr13 33994038 33994221 -85750677 - MIR SINE MIR -61 201 2 24 0 0 0 chr13 33995874 33995898 -85749000 + AT_rich Low_complexity Low_complexity 1 24 0 543 282 75 32 chr13 33996380 33996756 -85748142 + L1ME4a LINE L1 5726 6117 -4 274 319 89 22 chr13 33997158 33997293 -85747605 + MIR SINE MIR 8 151 -111 207 88 0 0 chr13 33997565 33997599 -85747299 + (A)n Simple_repeat Simple_repeat 1 34 0 265 236 14 42 chr13 33997700 33997772 -85747126 - L2 LINE L2 0 3313 3244 258 323 93 52 chr13 33998457 33998705 -85746193 - L3 LINE CR1 -301 1276 1019 5734 122 28 12 chr13 33998713 33999793 -85745105 - L1PB1 LINE L1 -3 6148 5053 589 329 108 23 chr13 33999802 34000155 -85744743 - L3 LINE CR1 -577 1000 618 35 41 0 0 chr13 34000215 34000264 -85744634 + AT_rich Low_complexity Low_complexity 1 49 0 1094 285 44 17 chr13 34002362 34002882 -85742016 + L1MEc LINE L1 582 1115 -5281 990 203 87 87 chr13 34002888 34003339 -85741559 + MLT1E3 LTR MaLR 7 452 -172 1901 153 0 3 chr13 34004056 34004350 -85740548 + AluJo SINE Alu 1 293 -19 184 171 24 0 chr13 34004953 34004994 -85739904 + MER5C DNA MER1_type 119 160 -164 21 0 0 0 chr13 34005093 34005114 -85739784 + AT_rich Low_complexity Low_complexity 1 21 0 228 189 56 22 chr13 34005457 34005547 -85739351 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 488 343 163 6 chr13 34005637 34006163 -85738735 + L2 LINE L2 2602 3215 -98 4862 161 54 12 chr13 34006187 34006941 -85737957 - L1MA8 LINE L1 -29 6262 5459 2021 131 3 6 chr13 34006941 34007253 -85737645 - AluSx SINE Alu -1 311 1 4862 161 54 12 chr13 34007253 34007490 -85737408 - L1MA8 LINE L1 -832 5459 5233 29 0 0 0 chr13 34007660 34007689 -85737209 + AT_rich Low_complexity Low_complexity 1 29 0 6063 211 70 30 chr13 34007818 34009395 -85735503 + L1M4 LINE L1 61 1700 -4842 203 175 0 0 chr13 34011092 34011132 -85733766 + T-rich Low_complexity Low_complexity 2 41 0 346 364 99 20 chr13 34012140 34012434 -85732464 - L3 LINE CR1 -877 700 384 184 286 0 18 chr13 34012508 34012564 -85732334 - MIR3 SINE MIR -31 177 123 212 271 83 90 chr13 34012595 34012728 -85732170 - MIR SINE MIR -3 259 128 2149 124 7 0 chr13 34013425 34013731 -85731167 - AluSq SINE Alu -5 308 1 282 376 27 32 chr13 34014542 34014728 -85730170 + MIR3 SINE MIR 22 206 -2 2031 86 54 0 chr13 34015554 34015834 -85729064 - AluSg1 SINE Alu -14 295 1 213 261 31 0 chr13 34016241 34016306 -85728592 + (TATG)n Simple_repeat Simple_repeat 2 68 0 348 390 6 17 chr13 34019584 34019761 -85725137 + MIR3 SINE MIR 21 195 -13 2128 287 91 11 chr13 34020606 34021686 -85723212 + L2 LINE L2 2099 3313 0 1833 147 22 0 chr13 34022024 34022296 -85722602 + Charlie3 DNA MER1_type 1 278 -2432 2599 78 6 14 chr13 34022296 34022654 -85722244 - THE1A LTR MaLR 0 355 1 738 333 111 8 chr13 34023417 34023768 -85721130 - L3 LINE CR1 -238 1339 953 381 286 48 39 chr13 34023775 34024046 -85720852 - MIR SINE MIR -2 260 24 220 426 0 0 chr13 34024284 34024399 -85720499 - L3 LINE CR1 -978 599 485 2080 136 7 0 chr13 34025975 34026283 -85718615 + AluSx SINE Alu 3 312 0 24 0 0 0 chr13 34026604 34026628 -85718270 + AT_rich Low_complexity Low_complexity 1 24 0 249 33 0 0 chr13 34028312 34028342 -85716556 + (TG)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr13 34029026 34029054 -85715844 + AT_rich Low_complexity Low_complexity 1 28 0 2011 116 0 17 chr13 34029567 34029861 -85715037 + AluSx SINE Alu 1 289 -23 234 0 0 0 chr13 34030035 34030061 -85714837 + (CA)n Simple_repeat Simple_repeat 2 27 0 1888 262 99 36 chr13 34030075 34031725 -85713173 - L1ME3A LINE L1 -8 6162 4409 2480 252 38 18 chr13 34031803 34032562 -85712336 - L1ME1 LINE L1 -28 6207 5434 859 232 84 48 chr13 34032590 34033441 -85711457 - L1ME1 LINE L1 -852 5363 4455 465 206 9 0 chr13 34033476 34033583 -85711315 + L1ME2 LINE L1 5881 5988 -176 24 32 0 0 chr13 34033638 34033669 -85711229 + AT_rich Low_complexity Low_complexity 1 31 0 778 277 59 22 chr13 34033793 34034299 -85710599 - L1ME1 LINE L1 -2566 3649 3125 925 239 43 0 chr13 34034304 34034513 -85710385 + MER58A DNA MER1_type 6 223 -1 474 229 75 43 chr13 34034515 34034703 -85710195 - L1ME1 LINE L1 -3084 3131 2938 * 2668 223 52 12 chr13 34034674 34035670 -85709228 - L1MD2 LINE L1 -440 5988 4956 711 328 67 49 chr13 34035672 34036345 -85708553 - L1ME1 LINE L1 -5711 685 1 854 318 34 25 chr13 34036372 34036898 -85708000 - L1MD2 LINE L1 -1831 4298 3768 337 290 12 12 chr13 34036954 34037199 -85707699 - L1MD2 LINE L1 -2585 3544 3258 246 39 0 59 chr13 34037218 34037269 -85707629 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 590 212 106 23 chr13 34037387 34037519 -85707379 - MER5A DNA MER1_type 0 189 47 1503 244 60 71 chr13 34037519 34038040 -85706858 - MLT2B1 LTR ERVL 0 520 6 289 196 0 0 chr13 34038045 34038096 -85706802 - MER5A DNA MER1_type -138 51 1 644 279 55 54 chr13 34038299 34039028 -85705870 - L1MD2 LINE L1 -4573 1737 971 2178 124 3 0 chr13 34039098 34039404 -85705494 + AluSg SINE Alu 1 307 -3 272 221 23 23 chr13 34039991 34040077 -85704821 - L1MD2 LINE L1 -5943 176 91 1514 264 70 68 chr13 34040319 34040881 -85704017 - L1MEc LINE L1 -3823 3118 2558 1999 131 3 13 chr13 34040881 34041187 -85703711 + AluSx SINE Alu 1 303 -9 1514 264 70 68 chr13 34041187 34041770 -85703128 - L1MEc LINE L1 -4383 2558 2010 1733 244 81 51 chr13 34041770 34042376 -85702522 - MLT1E2 LTR MaLR 0 626 3 1514 264 70 68 chr13 34042376 34042629 -85702269 - L1MEc LINE L1 -4931 2010 1759 1693 251 114 9 chr13 34042645 34043301 -85701597 - L1MEc LINE L1 -4887 1536 812 1173 296 57 35 chr13 34043407 34043972 -85700926 - L1MEc LINE L1 -5824 599 23 23 33 0 0 chr13 34044015 34044045 -85700853 + AT_rich Low_complexity Low_complexity 1 30 0 692 283 105 70 chr13 34044102 34044485 -85700413 - LTR16A LTR ERVL -54 396 1 22 0 0 0 chr13 34044485 34044507 -85700391 + AT_rich Low_complexity Low_complexity 1 22 0 608 256 0 0 chr13 34044814 34044931 -85699967 - FAM SINE Alu -65 120 4 21 36 0 0 chr13 34045310 34045338 -85699560 + AT_rich Low_complexity Low_complexity 1 28 0 1735 140 23 29 chr13 34046415 34046722 -85698176 - L1PB4 LINE L1 0 6156 5852 1825 163 0 23 chr13 34047059 34047366 -85697532 - AluJo SINE Alu -12 300 1 21 0 0 0 chr13 34047545 34047566 -85697332 + AT_rich Low_complexity Low_complexity 1 21 0 752 167 70 54 chr13 34048821 34049007 -85695891 + MER5A DNA MER1_type 1 189 0 695 250 156 0 chr13 34049638 34049830 -85695068 - MIR SINE MIR -10 252 31 24 96 0 0 chr13 34050437 34050510 -85694388 + AT_rich Low_complexity Low_complexity 1 73 0 599 271 97 14 chr13 34051459 34051666 -85693232 + MIR SINE MIR 15 238 -24 760 317 38 92 chr13 34051684 34052183 -85692715 - L2 LINE L2 -22 3291 2820 234 225 72 65 chr13 34052481 34052619 -85692279 - L2 LINE L2 -80 3233 3095 2129 76 0 34 chr13 34054443 34054792 -85690106 - AluY SINE Alu 0 339 1 23 0 0 0 chr13 34054907 34054930 -85689968 + AT_rich Low_complexity Low_complexity 1 23 0 1360 169 28 0 chr13 34055050 34055298 -85689600 + AluJo SINE Alu 39 293 -19 22 35 0 0 chr13 34056820 34056849 -85688049 + AT_rich Low_complexity Low_complexity 1 29 0 27 92 0 0 chr13 34057039 34057115 -85687783 + AT_rich Low_complexity Low_complexity 1 76 0 820 323 104 9 chr13 34057574 34058036 -85686862 + L1MC4 LINE L1 6493 6998 -1044 252 39 192 58 chr13 34058046 34058098 -85686800 - MADE1 DNA Mariner 0 80 22 791 266 116 55 chr13 34058232 34058812 -85686086 + L1MC5 LINE L1 6903 7517 -444 319 256 58 58 chr13 34058908 34059029 -85685869 + L1ME3 LINE L1 5961 6081 -81 24 32 0 0 chr13 34059072 34059103 -85685795 + AT_rich Low_complexity Low_complexity 1 31 0 244 143 41 0 chr13 34059142 34059191 -85685707 + L1M4 LINE L1 4490 4540 -1606 40 37 0 0 chr13 34059217 34059271 -85685627 + AT_rich Low_complexity Low_complexity 1 54 0 320 284 136 52 chr13 34059333 34059643 -85685255 + L1M4 LINE L1 4728 5063 -1083 2980 240 65 47 chr13 34060102 34062371 -85682527 + L1MB2 LINE L1 801 3160 -3222 3382 191 49 9 chr13 34062438 34063254 -85681644 - L1 LINE L1 -1161 5701 4853 * 11500 131 137 2 chr13 34063243 34065424 -85679474 - L1PBa LINE L1 -3791 3071 598 259 354 48 20 chr13 34065910 34066057 -85678841 + L2 LINE L2 3118 3268 -4 24 0 0 0 chr13 34066595 34066619 -85678279 + AT_rich Low_complexity Low_complexity 1 24 0 981 252 67 0 chr13 34066681 34066963 -85677935 - MER46C DNA MER2_type -33 305 5 311 121 17 0 chr13 34067084 34067142 -85677756 + (CA)n Simple_repeat Simple_repeat 2 60 0 896 177 24 0 chr13 34067154 34067318 -85677580 + MER58B DNA MER1_type 173 340 -1 26 88 0 0 chr13 34067516 34067584 -85677314 + AT_rich Low_complexity Low_complexity 1 68 0 746 188 7 0 chr13 34068250 34068388 -85676510 + AluJo SINE Alu 1 139 -173 272 246 0 0 chr13 34068388 34068445 -85676453 + AluJ/monomer SINE Alu 241 297 -3 2203 187 52 2 chr13 34068649 34069093 -85675805 - L1PBa LINE L1 -6395 468 3 1052 255 42 7 chr13 34069106 34069652 -85675246 + L1MB2 LINE L1 3431 4139 -2243 2353 197 31 69 chr13 34069689 34069877 -85675021 + L1MB2 LINE L1 4879 5072 -1337 240 86 0 0 chr13 34069877 34069912 -85674986 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2353 197 31 69 chr13 34069912 34070153 -85674745 + L1MB2 LINE L1 5072 5320 -1089 2170 121 3 0 chr13 34070153 34070458 -85674440 + AluSp SINE Alu 1 306 -7 2353 197 31 69 chr13 34070458 34070768 -85674130 + L1MB2 LINE L1 5320 5587 -822 3477 159 45 13 chr13 34070815 34071511 -85673387 + L1MB2 LINE L1 5683 6400 -7 612 295 74 32 chr13 34071517 34072098 -85672800 + L1ME LINE L1 5191 5797 -365 2125 146 24 11 chr13 34073337 34073707 -85671191 - THE1C LTR MaLR 0 375 1 840 169 38 19 chr13 34074485 34074645 -85670253 + Tigger1 DNA MER2_type 1 163 -2255 * 1128 176 23 9 chr13 34074624 34074840 -85670058 + Tigger1 DNA MER2_type 2200 2418 0 826 226 98 0 chr13 34074886 34075090 -85669808 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr13 34075541 34075562 -85669336 + AT_rich Low_complexity Low_complexity 1 21 0 1688 164 26 22 chr13 34075596 34075907 -85668991 - AluJo SINE Alu 0 312 1 35 0 0 0 chr13 34076174 34076209 -85668689 + AT_rich Low_complexity Low_complexity 1 35 0 4102 218 70 104 chr13 34076560 34078376 -85666522 - MER52A LTR ERV1 0 1755 1 21 36 0 0 chr13 34078647 34078675 -85666223 + AT_rich Low_complexity Low_complexity 1 28 0 27 96 0 0 chr13 34079275 34079358 -85665540 + AT_rich Low_complexity Low_complexity 1 83 0 340 294 122 46 chr13 34079397 34079456 -85665442 - MER58C DNA MER1_type -2206 214 161 2113 106 10 0 chr13 34079456 34079749 -85665149 - AluSg SINE Alu -14 296 1 340 294 122 46 chr13 34079749 34079886 -85665012 - MER58C DNA MER1_type -2259 161 3 1692 172 114 12 chr13 34080033 34080365 -85664533 + MER47A DNA MER2_type 1 366 0 29 60 0 0 chr13 34080916 34080966 -85663932 + AT_rich Low_complexity Low_complexity 1 50 0 1382 310 62 51 chr13 34081666 34082515 -85662383 + L1MEc LINE L1 107 974 -5422 1958 134 7 0 chr13 34082515 34082799 -85662099 + AluSx SINE Alu 1 286 -26 1382 310 62 51 chr13 34082799 34083103 -85661795 + L1MEc LINE L1 974 1273 -5123 1930 237 47 48 chr13 34083238 34084061 -85660837 + L1MD2 LINE L1 5262 6115 -51 1958 241 44 2 chr13 34084067 34084593 -85660305 + L1MB3 LINE L1 4437 4984 -1162 * 11586 201 60 8 chr13 34084573 34088008 -85656890 + L1MA8 LINE L1 2493 6125 -166 2232 140 42 28 chr13 34088008 34088436 -85656462 - Tigger2a DNA MER2_type 0 434 1 11586 201 60 8 chr13 34088436 34088597 -85656301 + L1MA8 LINE L1 6125 6276 -15 4340 189 32 19 chr13 34088625 34089743 -85655155 + L1MB3 LINE L1 5052 6179 -4 958 248 23 8 chr13 34090053 34090311 -85654587 + L1MEc LINE L1 1535 1796 -4600 372 219 0 0 chr13 34090326 34090399 -85654499 - Tigger5 DNA MER2_type 0 2323 2251 360 265 164 27 chr13 34090446 34090665 -85654233 + L1M4 LINE L1 3899 4147 -1999 13473 149 15 23 chr13 34091573 34093937 -85650961 + L1P2 LINE L1 12 2357 -3789 22244 75 7 4 chr13 34094053 34097252 -85647646 + L1P2 LINE L1 2301 5506 -648 1145 46 0 20 chr13 34097252 34097398 -85647500 + L1PA6 LINE L1 6006 6153 -1 2297 100 3 0 chr13 34098722 34099031 -85645867 + AluSp SINE Alu 1 310 -3 2019 128 3 3 chr13 34099187 34099476 -85645422 + AluSq SINE Alu 1 289 -24 325 141 28 0 chr13 34099476 34099547 -85645351 + (TA)n Simple_repeat Simple_repeat 1 73 0 1122 259 47 7 chr13 34100147 34100448 -85644450 - MER58B DNA MER1_type 0 341 29 407 253 84 42 chr13 34100453 34100619 -85644279 - MER112 DNA MER1_type -9 251 79 337 318 32 16 chr13 34100671 34100797 -85644101 - MIR SINE MIR -63 145 18 23 33 0 0 chr13 34101384 34101414 -85643484 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr13 34101739 34101771 -85643127 + AT_rich Low_complexity Low_complexity 1 32 0 188 268 21 113 chr13 34103403 34103500 -85641398 + L2 LINE L2 3222 3309 -4 309 51 0 0 chr13 34104028 34104067 -85640831 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 397 321 71 9 chr13 34105003 34105191 -85639707 + MIR SINE MIR 9 205 -57 21 0 0 0 chr13 34105961 34105982 -85638916 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 34106614 34106638 -85638260 + AT_rich Low_complexity Low_complexity 1 24 0 408 264 35 76 chr13 34106880 34107024 -85637874 + MIR SINE MIR 125 262 0 31 0 0 0 chr13 34107131 34107162 -85637736 + AT_rich Low_complexity Low_complexity 1 31 0 411 20 0 0 chr13 34107414 34107463 -85637435 + L1P LINE L1 4009 4057 -2089 28 0 0 0 chr13 34107554 34107582 -85637316 + AT_rich Low_complexity Low_complexity 1 28 0 35 71 0 0 chr13 34107980 34108050 -85636848 + AT_rich Low_complexity Low_complexity 1 70 0 787 87 4 8 chr13 34112219 34112345 -85632553 + MER30B DNA MER1_type 6 110 -80 227 158 66 0 chr13 34112360 34112436 -85632462 + (TA)n Simple_repeat Simple_repeat 1 81 0 2116 94 31 0 chr13 34113377 34113665 -85631233 + AluSg SINE Alu 8 304 -6 796 221 39 63 chr13 34114196 34114450 -85630448 - L1MD2 LINE L1 -24 6335 6088 594 153 9 0 chr13 34115085 34115196 -85629702 - L1MB4 LINE L1 -1 6179 6068 1173 162 14 19 chr13 34115196 34115412 -85629486 - Tigger2 DNA MER2_type -15 2703 2489 339 25 0 0 chr13 34115432 34115472 -85629426 + (TG)n Simple_repeat Simple_repeat 2 41 0 228 67 0 0 chr13 34115471 34115501 -85629397 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1234 102 0 0 chr13 34117419 34117586 -85627312 + AluSg/x SINE Alu 129 295 -15 5789 56 6 0 chr13 34118419 34119151 -85625747 - L1PA8 LINE L1 0 6172 5437 321 68 0 0 chr13 34121579 34121623 -85623275 + (TG)n Simple_repeat Simple_repeat 1 44 0 1064 130 7 0 chr13 34121623 34121777 -85623121 - AluSg/x SINE Alu -33 277 123 27 29 0 0 chr13 34121988 34122022 -85622876 + AT_rich Low_complexity Low_complexity 1 34 0 316 279 130 57 chr13 34122097 34122534 -85622364 - HAL1 LINE L1 -120 2387 1919 817 313 66 18 chr13 34122705 34123040 -85621858 + MLT1I LTR MaLR 59 409 0 430 216 103 0 chr13 34123044 34123160 -85621738 - HAL1 LINE L1 -784 1723 1596 691 229 146 55 chr13 34123352 34123736 -85621162 - HAL1 LINE L1 -973 1534 1116 1242 163 0 0 chr13 34125686 34125952 -85618946 + (TA)n Simple_repeat Simple_repeat 1 266 0 28 48 0 0 chr13 34127314 34127356 -85617542 + AT_rich Low_complexity Low_complexity 1 42 0 33 0 0 0 chr13 34128561 34128594 -85616304 + AT_rich Low_complexity Low_complexity 1 33 0 2136 113 0 20 chr13 34128819 34129119 -85615779 + AluSq SINE Alu 1 294 -19 243 420 0 10 chr13 34129290 34129390 -85615508 - L2 LINE L2 -11 3261 3163 711 320 86 31 chr13 34129817 34130326 -85614572 - L2 LINE L2 -626 2688 2152 546 331 107 32 chr13 34130327 34130674 -85614224 + L2 LINE L2 2929 3301 -12 181 184 26 0 chr13 34130787 34130825 -85614073 - L2 LINE L2 -1385 1929 1891 201 340 0 0 chr13 34130875 34130928 -85613970 - L2 LINE L2 -86 3186 3134 228 352 207 26 chr13 34131032 34131574 -85613324 - L2 LINE L2 -1442 1872 1233 284 308 33 0 chr13 34131857 34131948 -85612950 + MIR SINE MIR 48 141 -121 31223 108 10 59 chr13 34133359 34139815 -85605083 - L1PA7 LINE L1 -4 6150 19 1938 154 0 0 chr13 34140103 34140396 -85604502 - AluJb SINE Alu -19 293 1 4579 20 2 2 chr13 34140430 34140987 -85603911 + L1PA3 LINE L1 5612 6155 0 609 110 50 0 chr13 34142560 34142660 -85602238 - L1MA3 LINE L1 0 6305 6201 847 246 40 11 chr13 34142673 34142950 -85601948 + L1ME1 LINE L1 3558 3842 -2304 3672 241 45 19 chr13 34142958 34143992 -85600906 - L1PA16 LINE L1 -1052 5094 4034 5719 138 23 1 chr13 34143995 34145029 -85599869 + L1PA16 LINE L1 5102 6157 -9 2075 227 125 47 chr13 34145051 34145621 -85599277 + L1ME1 LINE L1 3847 4516 -1630 1730 120 36 0 chr13 34145621 34145896 -85599002 + L1MA2 LINE L1 6018 6302 -2 2075 227 125 47 chr13 34145896 34146234 -85598664 + L1ME1 LINE L1 4516 4826 -1320 3347 218 61 8 chr13 34146235 34147074 -85597824 + L1ME1 LINE L1 5280 6162 -4 187 261 0 0 chr13 34147232 34147278 -85597620 + L2 LINE L2 3227 3272 0 396 226 30 131 chr13 34147376 34147575 -85597323 + MIR SINE MIR 84 262 0 199 411 82 0 chr13 34148596 34148742 -85596156 - MIR3 SINE MIR -28 180 23 206 341 178 19 chr13 34149556 34149764 -85595134 - L2 LINE L2 -340 2974 2734 182 360 67 47 chr13 34149917 34150067 -85594831 - L2 LINE L2 -660 2654 2502 6647 138 13 13 chr13 34150647 34151522 -85593376 - L1MA2 LINE L1 0 6304 5431 1948 150 0 0 chr13 34151522 34151816 -85593082 - AluSx SINE Alu -18 294 1 6647 138 13 13 chr13 34151816 34152810 -85592088 - L1MA2 LINE L1 -873 5431 4433 497 230 30 0 chr13 34152812 34152912 -85591986 + Tigger5 DNA MER2_type 2221 2323 0 2315 243 43 0 chr13 34152978 34153508 -85591390 + L1MB7 LINE L1 495 1047 -5495 306 200 88 72 chr13 34153510 34153635 -85591263 + L1MB7 LINE L1 1075 1201 -5341 3554 160 20 8 chr13 34153643 34154280 -85590618 + L1PA15 LINE L1 5517 6161 -4 6132 238 51 40 chr13 34154294 34156677 -85588221 + L1MB7 LINE L1 2506 4909 -1735 3573 193 43 23 chr13 34156673 34156777 -85588121 + L1MB3 LINE L1 5366 5466 -717 * 2575 128 26 14 chr13 34156777 34157200 -85587698 - MSTA LTR MaLR 0 428 1 3573 193 43 23 chr13 34157200 34157893 -85587005 + L1MB3 LINE L1 5466 6179 -4 4105 205 46 25 chr13 34157906 34159640 -85585258 + L1MB7 LINE L1 4914 6682 0 737 316 63 16 chr13 34160168 34160722 -85584176 + L1M4 LINE L1 2131 2710 -3436 3765 116 9 8 chr13 34160745 34161273 -85583625 + MER1A DNA MER1_type 1 529 0 21 0 0 0 chr13 34161374 34161395 -85583503 + AT_rich Low_complexity Low_complexity 1 21 0 925 284 61 56 chr13 34161434 34162546 -85582352 + L1M4 LINE L1 2909 4026 -2120 183 42 0 0 chr13 34162666 34162690 -85582208 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr13 34164335 34164364 -85580534 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 34164774 34164801 -85580097 + AT_rich Low_complexity Low_complexity 1 27 0 276 130 0 0 chr13 34164914 34164960 -85579938 + (TCC)n Simple_repeat Simple_repeat 1 46 0 999 251 107 31 chr13 34164977 34165436 -85579462 - MLT1G1 LTR MaLR -45 504 1 24 32 0 0 chr13 34165578 34165609 -85579289 + AT_rich Low_complexity Low_complexity 1 31 0 237 254 18 0 chr13 34165806 34165861 -85579037 - L3b LINE CR1 -1 1582 1527 345 152 30 0 chr13 34165869 34165935 -85578963 - MER53 DNA DNA -101 88 21 22 0 0 0 chr13 34165953 34165975 -85578923 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 34166219 34166246 -85578652 + AT_rich Low_complexity Low_complexity 1 27 0 558 214 23 54 chr13 34167554 34167786 -85577112 - MER106B DNA MER1_type 0 1059 11 25 83 0 0 chr13 34167841 34167901 -85576997 + AT_rich Low_complexity Low_complexity 1 60 0 405 0 0 0 chr13 34167981 34168026 -85576872 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 95 0 0 chr13 34168623 34168686 -85576212 + AT_rich Low_complexity Low_complexity 1 63 0 194 224 35 17 chr13 34168835 34168893 -85576005 - MIR3 SINE MIR -30 178 120 28 0 0 0 chr13 34169669 34169697 -85575201 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr13 34170163 34170189 -85574709 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2194 100 3 0 chr13 34170408 34170697 -85574201 + AluSx SINE Alu 3 292 -20 485 258 47 53 chr13 34170884 34171074 -85573824 - MIR SINE MIR -8 254 66 2117 161 45 8 chr13 34171075 34171454 -85573444 - MLT2C1 LTR ERVL 0 397 5 1824 237 35 89 chr13 34171968 34172619 -85572279 + L2 LINE L2 2131 2746 -568 948 210 36 0 chr13 34172622 34172817 -85572081 - MER3 DNA MER1_type 0 209 8 869 302 120 38 chr13 34172822 34173349 -85571549 + L2 LINE L2 2742 3313 0 26 30 0 0 chr13 34173428 34173461 -85571437 + AT_rich Low_complexity Low_complexity 1 33 0 691 248 250 36 chr13 34173956 34174368 -85570530 + L2 LINE L2 2814 3313 0 193 267 67 0 chr13 34174474 34174519 -85570379 + MIR SINE MIR 64 111 -151 2997 84 23 0 chr13 34174554 34174983 -85569915 - L1PA13 LINE L1 -1 6162 5724 235 326 31 31 chr13 34174992 34175121 -85569777 + MIR SINE MIR 102 230 -32 1143 101 0 19 chr13 34175277 34175435 -85569463 - AluSg/x SINE Alu -18 294 140 1190 109 0 0 chr13 34175536 34175692 -85569206 + AluSg/x SINE Alu 136 291 -19 673 300 40 9 chr13 34175926 34176149 -85568749 - L2 LINE L2 -413 2901 2672 366 23 0 0 chr13 34176781 34176824 -85568074 + (TG)n Simple_repeat Simple_repeat 1 43 0 427 311 48 24 chr13 34176944 34177111 -85567787 - MIR SINE MIR -70 192 22 1561 257 96 51 chr13 34177257 34178347 -85566551 + L1ME1 LINE L1 795 1929 -4477 1171 235 59 47 chr13 34178369 34178828 -85566070 + L1ME1 LINE L1 5116 5629 -853 690 263 21 16 chr13 34178820 34179010 -85565888 + L1ME1 LINE L1 6218 6408 -18 * 189 147 0 0 chr13 34179293 34179327 -85565571 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 21 0 0 0 chr13 34179412 34179433 -85565465 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 34179794 34179817 -85565081 + AT_rich Low_complexity Low_complexity 1 23 0 189 364 129 0 chr13 34180893 34181033 -85563865 - L2 LINE L2 -880 2434 2277 259 348 205 28 chr13 34181272 34181804 -85563094 - L2 LINE L2 -2158 1156 531 23 0 0 0 chr13 34183574 34183597 -85561301 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 34185517 34185554 -85559344 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr13 34185789 34185841 -85559057 + AT_rich Low_complexity Low_complexity 1 52 0 3840 198 88 10 chr13 34185975 34186886 -85558012 - L1 LINE L1 -1088 5760 4779 * 16285 186 22 10 chr13 34186881 34190295 -85554603 - L1 LINE L1 -3390 3458 5 1599 129 3 77 chr13 34190298 34190387 -85554511 - Tigger2a DNA MER2_type -2420 288 194 1923 141 3 0 chr13 34190387 34190697 -85554201 + AluJb SINE Alu 1 311 0 1599 129 3 77 chr13 34190697 34190916 -85553982 - Tigger2a DNA MER2_type -2514 194 2 * 2452 180 71 16 chr13 34190916 34191527 -85553371 - Tigger1 DNA MER2_type -1435 983 5 23 0 0 0 chr13 34192024 34192047 -85552851 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 34192998 34193023 -85551875 + AT_rich Low_complexity Low_complexity 1 25 0 1288 264 141 16 chr13 34195616 34196388 -85548510 - L1ME3 LINE L1 -3 6228 5351 236 235 94 0 chr13 34199031 34199116 -85545782 - L1ME3 LINE L1 -866 5349 5257 2095 274 87 46 chr13 34199128 34199768 -85545130 - L1ME3 LINE L1 -1002 5213 4601 2054 113 0 10 chr13 34199768 34200080 -85544818 + AluSx SINE Alu 1 309 0 2095 274 87 46 chr13 34200080 34200656 -85544242 - L1ME3 LINE L1 -1614 4601 3945 2233 105 0 0 chr13 34204127 34204431 -85540467 - AluSx SINE Alu -8 304 1 24 0 0 0 chr13 34204988 34205012 -85539886 + AT_rich Low_complexity Low_complexity 1 24 0 1581 187 6 16 chr13 34205023 34205338 -85539560 + AluJo SINE Alu 1 312 0 33 43 0 0 chr13 34205670 34205717 -85539181 + AT_rich Low_complexity Low_complexity 1 47 0 306 0 0 0 chr13 34209576 34209610 -85535288 + (TG)n Simple_repeat Simple_repeat 2 35 0 2064 150 0 0 chr13 34210600 34210907 -85533991 + AluSx SINE Alu 3 309 -3 23 0 0 0 chr13 34211749 34211772 -85533126 + AT_rich Low_complexity Low_complexity 1 23 0 719 287 0 0 chr13 34212105 34212293 -85532605 + MER46C DNA MER2_type 137 324 -14 2868 258 41 39 chr13 34214352 34214794 -85530104 - L1ME3 LINE L1 -2995 3220 2780 2388 119 94 8 chr13 34214794 34215188 -85529710 + MSTA LTR MaLR 1 428 0 2868 258 41 39 chr13 34215188 34215674 -85529224 - L1ME3 LINE L1 -3435 2780 2328 648 218 0 0 chr13 34215674 34215798 -85529100 - FLAM_A SINE Alu -8 125 2 2868 258 41 39 chr13 34215798 34216170 -85528728 - L1ME3 LINE L1 -3887 2328 1958 405 309 72 21 chr13 34216187 34216423 -85528475 - L1ME3 LINE L1 -5820 385 138 1077 323 122 13 chr13 34216497 34217216 -85527682 + L2 LINE L2 2501 3309 -4 10531 111 82 5 chr13 34217217 34218869 -85526029 - Tigger1 DNA MER2_type 0 2418 640 1752 138 82 31 chr13 34218869 34219224 -85525674 - THE1C LTR MaLR 0 375 3 3604 148 19 0 chr13 34219226 34219808 -85525090 - Tigger1 DNA MER2_type -1771 647 55 189 0 0 0 chr13 34219808 34219829 -85525069 + (A)n Simple_repeat Simple_repeat 1 21 0 272 286 170 14 chr13 34219874 34220021 -85524877 + MIR SINE MIR 63 232 -30 185 307 78 48 chr13 34220640 34220806 -85524092 + L2 LINE L2 3122 3292 -21 187 343 27 14 chr13 34220813 34220886 -85524012 - L2 LINE L2 -38 3234 3161 259 167 61 45 chr13 34221041 34221107 -85523791 + MER103 DNA DNA 8 74 -92 27 0 0 0 chr13 34221743 34221770 -85523128 + AT_rich Low_complexity Low_complexity 1 27 0 44 35 0 0 chr13 34222773 34222831 -85522067 + AT_rich Low_complexity Low_complexity 1 58 0 217 336 41 33 chr13 34222865 34222987 -85521911 - L2 LINE L2 -12 3301 3179 7582 21 6 2 chr13 34223042 34224369 -85520529 + L1PA3 LINE L1 4823 6152 -3 230 202 0 0 chr13 34224910 34224956 -85519942 - MIR SINE MIR -118 90 45 204 40 0 0 chr13 34224971 34224996 -85519902 + (CTG)n Simple_repeat Simple_repeat 2 26 0 330 297 135 0 chr13 34224998 34225109 -85519789 - MIR SINE MIR -25 237 112 23 33 0 0 chr13 34225357 34225387 -85519511 + AT_rich Low_complexity Low_complexity 1 30 0 2200 70 10 3 chr13 34225919 34226221 -85518677 - L1PB1 LINE L1 -4 6147 5844 2121 115 0 28 chr13 34226549 34226870 -85518028 - AluSx SINE Alu 0 312 1 5936 92 24 3 chr13 34227292 34229110 -85515788 + L1PA13 LINE L1 4317 6160 -3 7330 128 39 40 chr13 34230130 34231065 -85513833 - HSMAR2 DNA Mariner -1 1301 367 1655 170 3 48 chr13 34231065 34231248 -85513650 - AluJb SINE Alu -15 297 132 212 0 36 0 chr13 34231248 34231276 -85513622 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1655 170 3 48 chr13 34231276 34231403 -85513495 - AluJb SINE Alu -180 132 1 7330 128 39 40 chr13 34231403 34231762 -85513136 - HSMAR2 DNA Mariner -935 367 9 255 298 41 41 chr13 34232119 34232240 -85512658 + L2 LINE L2 3151 3271 -1 864 241 46 30 chr13 34232391 34232641 -85512257 + MIR SINE MIR 1 254 -8 538 312 38 0 chr13 34232668 34232825 -85512073 - MLT1I LTR MaLR -206 203 41 16580 51 5 6 chr13 34233839 34237907 -85506991 - L1PA5 LINE L1 -3 6151 2127 308 269 10 67 chr13 34238086 34238190 -85506708 + L2 LINE L2 3169 3266 -6 1865 182 14 20 chr13 34238426 34238460 -85506438 - MLT1A1 LTR MaLR 0 365 332 1760 110 116 12 chr13 34238460 34238787 -85506111 - MER46B DNA MER2_type 0 236 1 1865 182 14 20 chr13 34238787 34239104 -85505794 - MLT1A1 LTR MaLR -33 332 16 1811 247 45 15 chr13 34239515 34240859 -85504039 - L1MDa LINE L1 -1780 4760 3273 * 3488 204 68 4 chr13 34240855 34241730 -85503168 - L1MDa LINE L1 -909 1992 1573 44097 37 3 0 chr13 34241756 34247888 -85497010 - L1PA4 LINE L1 -3 6152 1 5112 217 122 11 chr13 34247892 34249223 -85495675 - L1MDa LINE L1 -4984 1556 116 1225 95 0 6 chr13 34249236 34249405 -85495493 - L1PB1 LINE L1 -6 6145 5978 306 0 0 0 chr13 34249406 34249440 -85495458 + (TG)n Simple_repeat Simple_repeat 2 35 0 3377 145 25 8 chr13 34249443 34250189 -85494709 - L1PB1 LINE L1 -371 5780 5017 385 200 24 12 chr13 34250188 34250273 -85494625 - L1MDa LINE L1 -6412 128 43 * 284 358 83 0 chr13 34250734 34250843 -85494055 - L2 LINE L2 -1 3271 3154 204 40 0 0 chr13 34251698 34251723 -85493175 + (TA)n Simple_repeat Simple_repeat 1 25 0 219 210 25 12 chr13 34252419 34252500 -85492398 + (TA)n Simple_repeat Simple_repeat 2 83 0 22 35 0 0 chr13 34252964 34252993 -85491905 + AT_rich Low_complexity Low_complexity 1 29 0 695 277 104 34 chr13 34254528 34254616 -85490282 + L1MC4 LINE L1 7565 7645 -397 233 0 62 0 chr13 34254616 34254648 -85490250 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1969 79 68 8 chr13 34254650 34254915 -85489983 - AluSq SINE Alu -32 281 1 695 277 104 34 chr13 34254915 34255263 -85489635 + L1MC4 LINE L1 7645 8035 -7 400 302 0 28 chr13 34255407 34255573 -85489325 + L1ME LINE L1 5513 5662 -459 2493 50 7 0 chr13 34256031 34256330 -85488568 + AluY SINE Alu 1 301 -10 236 330 78 0 chr13 34258579 34258694 -85486204 - L2 LINE L2 -1 3271 3148 555 166 12 117 chr13 34258701 34258864 -85486034 + MER20 DNA MER1_type 73 218 -1 183 360 99 41 chr13 34258864 34259106 -85485792 - L2 LINE L2 -116 3156 2901 1018 48 0 0 chr13 34259217 34259343 -85485555 + L1PA5 LINE L1 6026 6151 -3 21 0 0 0 chr13 34259449 34259470 -85485428 + AT_rich Low_complexity Low_complexity 1 21 0 2336 99 0 0 chr13 34259479 34259782 -85485116 - AluSq SINE Alu -10 303 1 218 269 0 0 chr13 34261619 34261671 -85483227 + CT-rich Low_complexity Low_complexity 1 52 0 192 189 0 0 chr13 34264572 34264609 -85480289 - L2 LINE L2 -94 3219 3183 232 308 68 55 chr13 34264932 34265078 -85479820 - MIR SINE MIR -5 257 110 188 257 129 29 chr13 34265141 34265211 -85479687 - MIR3 SINE MIR -43 165 89 437 62 15 0 chr13 34265374 34265439 -85479459 + (TA)n Simple_repeat Simple_repeat 2 67 0 5643 22 0 0 chr13 34265439 34266088 -85478810 - L1PA5 LINE L1 -20 6134 5486 215 177 16 0 chr13 34266380 34266442 -85478456 + (TA)n Simple_repeat Simple_repeat 1 63 0 360 294 65 74 chr13 34268130 34268361 -85476537 - L2 LINE L2 0 3272 3044 313 328 140 67 chr13 34268532 34268979 -85475919 - L2 LINE L2 -218 3054 2568 1720 167 3 42 chr13 34269795 34270106 -85474792 + AluJb SINE Alu 1 299 -13 2226 84 3 0 chr13 34270716 34271024 -85473874 - AluY SINE Alu -2 309 1 201 296 80 40 chr13 34271374 34271499 -85473399 + MIR SINE MIR 19 148 -114 21 0 0 0 chr13 34271839 34271860 -85473038 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr13 34273434 34273463 -85471435 + AT_rich Low_complexity Low_complexity 1 29 0 2360 91 0 0 chr13 34274181 34274490 -85470408 + AluY SINE Alu 1 309 -2 202 188 0 0 chr13 34275000 34275032 -85469866 + polypurine Low_complexity Low_complexity 2 33 0 474 264 31 0 chr13 34275296 34275425 -85469473 - MIR SINE MIR -44 218 86 216 86 0 0 chr13 34276587 34276622 -85468276 + (TA)n Simple_repeat Simple_repeat 2 36 0 3196 186 41 26 chr13 34276864 34277215 -85467683 - L1MB7 LINE L1 -10 6174 5830 2172 95 3 0 chr13 34277215 34277509 -85467389 - AluY SINE Alu -16 295 1 3196 186 41 26 chr13 34277509 34277861 -85467037 - L1MB7 LINE L1 -354 5830 5460 189 0 0 0 chr13 34278620 34278641 -85466257 + (CA)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr13 34280318 34280340 -85464558 + AT_rich Low_complexity Low_complexity 1 22 0 2670 119 27 19 chr13 34280369 34280780 -85464118 - MSTC LTR MaLR 0 428 15 215 305 222 39 chr13 34282140 34282785 -85462113 - L2 LINE L2 -509 2805 2043 1726 153 20 10 chr13 34282943 34283244 -85461654 + AluJb SINE Alu 1 304 -8 584 268 112 6 chr13 34284185 34284364 -85460534 + MIR SINE MIR 29 226 -36 196 290 58 29 chr13 34284400 34284469 -85460429 + L2 LINE L2 3180 3250 -63 22 0 0 0 chr13 34284697 34284719 -85460179 + AT_rich Low_complexity Low_complexity 1 22 0 292 314 123 83 chr13 34284860 34285064 -85459834 - L2 LINE L2 -4 3268 3057 1495 183 0 4 chr13 34286114 34286371 -85458527 - AluJo SINE Alu -56 256 1 2150 96 3 3 chr13 34286794 34287086 -85457812 + AluSg SINE Alu 1 292 -18 2609 211 39 10 chr13 34287756 34288353 -85456545 + MER90 LTR ERV1 1 614 0 2168 127 0 3 chr13 34288419 34288726 -85456172 + AluSx SINE Alu 1 306 -6 23 68 0 0 chr13 34288831 34288875 -85456023 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr13 34293248 34293276 -85451622 + AT_rich Low_complexity Low_complexity 1 28 0 531 0 0 0 chr13 34295900 34295959 -85448939 + (CTG)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr13 34299727 34299748 -85445150 + AT_rich Low_complexity Low_complexity 1 21 0 446 242 13 59 chr13 34302341 34302494 -85442404 - L1ME1 LINE L1 -7 6159 6014 369 0 0 0 chr13 34303838 34303879 -85441019 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 179 232 9 chr13 34306102 34306214 -85438684 - MIR SINE MIR -66 196 60 21 0 0 0 chr13 34306395 34306416 -85438482 + AT_rich Low_complexity Low_complexity 1 21 0 571 298 144 59 chr13 34307063 34307506 -85437392 - L3 LINE CR1 -14 1563 1083 204 291 114 25 chr13 34308382 34308461 -85436437 - L3 LINE CR1 -473 1104 1019 22 56 0 0 chr13 34308544 34308580 -85436318 + AT_rich Low_complexity Low_complexity 1 36 0 621 296 29 50 chr13 34310293 34310533 -85434365 - MIR SINE MIR -17 245 11 389 255 102 0 chr13 34310537 34310635 -85434263 + MIR SINE MIR 106 213 -49 207 279 59 15 chr13 34310667 34310735 -85434163 - MIR SINE MIR -164 98 28 994 258 151 6 chr13 34310913 34311258 -85433640 + L2 LINE L2 2209 2603 -711 218 302 149 66 chr13 34311313 34311660 -85433238 - L2 LINE L2 -1150 2164 1774 1930 98 39 3 chr13 34311660 34311946 -85432952 + L1PB1 LINE L1 5852 6147 -4 218 302 149 66 chr13 34311946 34312022 -85432876 - L2 LINE L2 -1540 1774 1706 223 392 0 0 chr13 34312629 34312726 -85432172 - L2 LINE L2 -2569 745 649 222 243 14 71 chr13 34313315 34313385 -85431513 + MIR3 SINE MIR 120 185 -23 27 29 0 0 chr13 34313484 34313518 -85431380 + AT_rich Low_complexity Low_complexity 1 34 0 37 90 0 0 chr13 34313548 34313648 -85431250 + AT_rich Low_complexity Low_complexity 1 100 0 223 316 71 10 chr13 34313780 34313878 -85431020 + L3 LINE CR1 69 172 -1405 1398 220 26 87 chr13 34314021 34314038 -85430860 + L1MEc LINE L1 2030 2046 -4169 567 76 13 0 chr13 34314038 34314117 -85430781 + MADE1 DNA Mariner 1 80 0 1398 220 26 87 chr13 34314117 34314339 -85430559 + L1MEc LINE L1 2046 2280 -3935 1647 195 23 3 chr13 34314339 34314641 -85430257 + AluJb SINE Alu 4 311 -1 1398 220 26 87 chr13 34314641 34315073 -85429825 + L1MEc LINE L1 2280 2652 -3563 316 214 0 0 chr13 34315090 34315146 -85429752 - Tigger5 DNA MER2_type 0 2323 2268 440 206 0 0 chr13 34315158 34315231 -85429667 - Tigger5 DNA MER2_type -2250 73 1 969 148 82 0 chr13 34315232 34315428 -85429470 + L1MEc LINE L1 2669 2880 -3335 301 272 82 90 chr13 34315441 34315720 -85429178 + L3 LINE CR1 1111 1387 -190 602 205 0 47 chr13 34315764 34315891 -85429007 - FLAM_A SINE Alu -12 121 1 1653 188 13 3 chr13 34315956 34316264 -85428634 + AluJo SINE Alu 1 311 -1 22 35 0 0 chr13 34317368 34317397 -85427501 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 34318299 34318329 -85426569 + AT_rich Low_complexity Low_complexity 1 30 0 196 256 128 34 chr13 34321580 34321697 -85423201 - L2 LINE L2 -4 3309 3182 392 217 0 12 chr13 34322241 34322324 -85422574 - MER63 DNA MER1_type -295 766 685 538 269 98 51 chr13 34322789 34323419 -85421479 - L1ME4a LINE L1 -2 6119 5455 255 259 37 104 chr13 34323779 34323914 -85420984 - Charlie8 DNA MER1_type -2291 126 1 1459 151 93 18 chr13 34324237 34324515 -85420383 - AluJo SINE Alu -13 299 1 30 0 0 0 chr13 34324640 34324670 -85420228 + AT_rich Low_complexity Low_complexity 1 30 0 1699 169 0 20 chr13 34325661 34325962 -85418936 - AluJo SINE Alu -7 305 11 210 243 135 40 chr13 34326324 34326398 -85418500 - MIR SINE MIR -105 103 23 323 313 99 0 chr13 34326422 34326553 -85418345 - L3 LINE CR1 -1 1576 1433 2222 230 93 47 chr13 34326601 34327344 -85417554 + L2 LINE L2 1801 2577 -737 260 368 152 6 chr13 34327394 34327565 -85417333 - L3 LINE CR1 -498 1079 884 489 313 27 7 chr13 34327642 34327789 -85417109 - MIR SINE MIR -90 172 23 513 328 99 51 chr13 34327877 34328476 -85416422 - L2 LINE L2 -453 2861 2187 3477 167 11 54 chr13 34328489 34329196 -85415702 + MER54B LTR ERVL 1 677 -116 369 297 95 39 chr13 34329264 34329496 -85415402 - L2 LINE L2 -1212 2102 1858 204 290 108 0 chr13 34329519 34329612 -85415286 - L3 LINE CR1 -731 846 744 243 206 59 15 chr13 34330224 34330292 -85414606 + GA-rich Low_complexity Low_complexity 3 73 0 405 267 102 75 chr13 34330293 34330480 -85414418 - MIR SINE MIR -13 249 58 21 82 0 0 chr13 34331333 34331382 -85413516 + AT_rich Low_complexity Low_complexity 1 49 0 2105 98 3 50 chr13 34332737 34333055 -85411843 - AluSx SINE Alu -9 303 1 29 47 0 0 chr13 34333193 34333236 -85411662 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr13 34333586 34333617 -85411281 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr13 34334169 34334218 -85410680 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr13 34335353 34335382 -85409516 + AT_rich Low_complexity Low_complexity 1 29 0 692 283 68 34 chr13 34336359 34336596 -85408302 - MIR SINE MIR -6 256 12 241 213 129 116 chr13 34337341 34337496 -85407402 + L2 LINE L2 3149 3305 -8 203 350 136 10 chr13 34337678 34337781 -85407117 - L2 LINE L2 -18 3254 3139 582 291 32 16 chr13 34337900 34338089 -85406809 - MIR SINE MIR -66 196 5 24 32 0 0 chr13 34339223 34339254 -85405644 + AT_rich Low_complexity Low_complexity 1 31 0 1795 130 57 3 chr13 34339256 34339572 -85405326 - L1MA4 LINE L1 -14 6286 5954 1296 148 84 15 chr13 34339576 34339836 -85405062 - MER1B DNA MER1_type 0 339 1 36 53 0 0 chr13 34340744 34340801 -85404097 + AT_rich Low_complexity Low_complexity 1 57 0 240 158 105 18 chr13 34340977 34341034 -85403864 - MLT1K LTR MaLR -5 583 522 2181 100 0 55 chr13 34341777 34342106 -85402792 + AluSx SINE Alu 1 311 -1 1815 140 3 17 chr13 34342206 34342499 -85402399 + MER1B DNA MER1_type 51 339 0 293 392 48 0 chr13 34342522 34342688 -85402210 - L2 LINE L2 -743 2571 2398 244 362 79 22 chr13 34342706 34342935 -85401963 - MIR SINE MIR -1 261 20 489 301 80 0 chr13 34342956 34343155 -85401743 - L2 LINE L2 -926 2388 2174 26 0 0 0 chr13 34344247 34344273 -85400625 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr13 34344814 34344844 -85400054 + AT_rich Low_complexity Low_complexity 1 30 0 2133 112 0 7 chr13 34344846 34345174 -85399724 + AluSx SINE Alu 1 312 0 329 314 18 71 chr13 34345220 34345243 -85399655 + MIR SINE MIR 28 51 -211 1291 205 144 28 chr13 34345243 34345570 -85399328 - MLT1A1 LTR MaLR 0 365 1 329 314 18 71 chr13 34345570 34345772 -85399126 + MIR SINE MIR 51 241 -21 1218 154 46 0 chr13 34345946 34346141 -85398757 + AluJb SINE Alu 6 209 -103 4615 186 264 47 chr13 34346143 34347496 -85397402 - MER52A LTR ERV1 -10 1745 1 607 163 0 0 chr13 34347496 34347588 -85397310 + AluSg/x SINE Alu 203 294 -15 634 216 76 22 chr13 34348611 34348796 -85396102 - MIR SINE MIR -1 261 67 24 0 0 0 chr13 34350013 34350037 -85394861 + AT_rich Low_complexity Low_complexity 1 24 0 314 136 227 0 chr13 34352294 34352360 -85392538 + MER69 DNA AcHobo 1 81 -2445 866 279 77 30 chr13 34352506 34352872 -85392026 - L1MC/D LINE L1 -2089 5719 5337 251 300 0 0 chr13 34353386 34353436 -85391462 - L2 LINE L2 -18 3254 3205 22 0 0 0 chr13 34353555 34353577 -85391321 + AT_rich Low_complexity Low_complexity 1 22 0 265 299 46 0 chr13 34354208 34354295 -85390603 - MIR SINE MIR -49 213 123 413 277 27 0 chr13 34354307 34354419 -85390479 + L2 LINE L2 3158 3272 0 228 35 0 0 chr13 34354878 34354907 -85389991 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 374 264 40 69 chr13 34355146 34355320 -85389578 - MIR SINE MIR -12 250 82 402 96 27 14 chr13 34356008 34356081 -85388817 - L1MC2 LINE L1 -13 6331 6258 335 78 20 0 chr13 34356213 34356264 -85388634 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 557 291 108 55 chr13 34356958 34357395 -85387503 - L2 LINE L2 0 3313 2854 3559 115 24 4 chr13 34357685 34358224 -85386674 - Tigger4(Zombi) DNA MER2_type 0 2731 2182 954 208 0 0 chr13 34358243 34358411 -85386487 - Tigger4(Zombi) DNA MER2_type -2559 172 5 371 339 78 0 chr13 34358676 34358791 -85386107 - L2 LINE L2 -32 3240 3117 2704 26 0 0 chr13 34359211 34359519 -85385379 + AluY SINE Alu 1 308 -3 183 318 136 23 chr13 34360250 34360426 -85384472 - L2 LINE L2 -5 3308 3113 220 350 38 0 chr13 34360867 34360947 -85383951 + L2 LINE L2 3172 3254 -59 381 58 0 0 chr13 34361302 34361354 -85383544 + (TG)n Simple_repeat Simple_repeat 2 53 0 732 205 19 68 chr13 34361394 34361599 -85383299 - MIR SINE MIR -8 254 60 2852 219 68 24 chr13 34362214 34363146 -85381752 - Charlie2 DNA MER1_type -35 2827 1855 21 0 0 0 chr13 34363236 34363257 -85381641 + AT_rich Low_complexity Low_complexity 1 21 0 390 308 33 55 chr13 34365619 34365801 -85379097 - L2 LINE L2 -4 3309 3132 1501 169 4 0 chr13 34365816 34366053 -85378845 + AluSx SINE Alu 58 295 -17 27 0 0 26 chr13 34366117 34366132 -85378766 + AT_rich Low_complexity Low_complexity 1 15 -22 2312 94 0 7 chr13 34366132 34366429 -85378469 - AluSg SINE Alu -15 295 1 27 0 0 26 chr13 34366429 34366451 -85378447 + AT_rich Low_complexity Low_complexity 15 37 0 186 43 0 0 chr13 34366557 34366580 -85378318 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 432 273 44 54 chr13 34366685 34366890 -85378008 + MARNA DNA Mariner 19 221 -365 337 185 0 158 chr13 34367043 34367182 -85377716 - LTR41 LTR ERVL -8 765 648 2216 121 0 3 chr13 34367182 34367480 -85377418 + AluSx SINE Alu 1 297 -15 919 224 133 8 chr13 34367567 34367830 -85377068 - LTR41 LTR ERVL -477 296 1 288 276 81 65 chr13 34368572 34368695 -85376203 - MIR SINE MIR -108 154 30 257 288 50 12 chr13 34369171 34369251 -85375647 - MLT1J LTR MaLR -193 318 236 1134 195 23 9 chr13 34369411 34369632 -85375266 + MER58A DNA MER1_type 1 224 0 662 292 88 12 chr13 34371187 34371691 -85373207 - MLT1L LTR MaLR -15 600 1 255 376 51 17 chr13 34371756 34371873 -85373025 + L2 LINE L2 3136 3256 -16 533 338 129 34 chr13 34372059 34372408 -85372490 - L3 LINE CR1 -1192 385 4 1997 153 0 3 chr13 34372466 34372766 -85372132 - AluJb SINE Alu -13 299 1 224 208 0 0 chr13 34373045 34373093 -85371805 + L2 LINE L2 3266 3313 0 2629 205 41 21 chr13 34373305 34373872 -85371026 + MER119 DNA MER1_type 6 583 0 180 77 0 0 chr13 34374189 34374215 -85370683 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 273 268 0 14 chr13 34375668 34375739 -85369159 + (CATA)n Simple_repeat Simple_repeat 2 71 0 252 405 63 0 chr13 34377697 34377808 -85367090 - L2 LINE L2 -21 3251 3134 271 337 79 0 chr13 34377942 34378043 -85366855 - L2 LINE L2 -211 3061 2953 608 239 138 6 chr13 34378160 34378327 -85366571 + MER5A DNA MER1_type 1 189 0 2432 41 0 50 chr13 34379208 34379528 -85365370 + AluY SINE Alu 1 304 -7 1161 248 35 4 chr13 34379567 34379821 -85365077 - MIR SINE MIR 0 262 1 1198 276 45 11 chr13 34380076 34380428 -85364470 - LTR16A LTR ERVL -20 430 67 711 243 50 6 chr13 34380455 34380636 -85364262 - MER5A DNA MER1_type 0 189 1 342 230 115 27 chr13 34381478 34381626 -85363272 - L1ME4a LINE L1 -1 6120 5960 289 290 11 0 chr13 34381675 34381768 -85363130 - L1ME4a LINE L1 -266 5855 5762 405 0 0 0 chr13 34382707 34382752 -85362146 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 31 44 0 0 chr13 34383184 34383229 -85361669 + AT_rich Low_complexity Low_complexity 1 45 0 1217 112 0 6 chr13 34383451 34383629 -85361269 - L1PA15 LINE L1 -3 6162 5986 214 242 144 45 chr13 34384488 34384620 -85360278 - L2 LINE L2 0 3313 3169 21 0 0 0 chr13 34385194 34385215 -85359683 + AT_rich Low_complexity Low_complexity 1 21 0 2202 89 0 0 chr13 34385655 34385966 -85358932 + AluSg SINE Alu 1 311 0 432 274 129 0 chr13 34386089 34386275 -85358623 - MLT1J1 LTR MaLR -236 210 1 464 306 107 19 chr13 34387500 34387716 -85357182 + MIR SINE MIR 28 262 0 1196 151 36 36 chr13 34388199 34388424 -85356474 - MER46A DNA MER2_type 0 236 12 820 248 51 23 chr13 34388427 34388641 -85356257 + MIR SINE MIR 16 235 -27 356 294 25 34 chr13 34389147 34389266 -85355632 - L2 LINE L2 -5 3267 3150 289 77 0 0 chr13 34389585 34389624 -85355274 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2174 88 0 7 chr13 34389624 34389908 -85354990 - AluSg SINE Alu -1 320 1 21 0 0 0 chr13 34390791 34390812 -85354086 + AT_rich Low_complexity Low_complexity 1 21 0 310 253 0 0 chr13 34390858 34390933 -85353965 - MLT1L LTR MaLR 0 615 541 410 347 57 0 chr13 34391001 34391177 -85353721 + MIR SINE MIR 65 250 -12 26 30 0 0 chr13 34391310 34391343 -85353555 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr13 34391451 34391474 -85353424 + AT_rich Low_complexity Low_complexity 1 23 0 477 121 0 0 chr13 34392288 34392393 -85352505 - AluSg/x SINE Alu 0 317 213 290 265 176 0 chr13 34392831 34392933 -85351965 - L2 LINE L2 0 3272 3153 395 260 31 0 chr13 34393690 34393786 -85351112 - MIR SINE MIR 0 262 164 291 161 0 0 chr13 34393955 34394011 -85350887 + A-rich Low_complexity Low_complexity 1 56 0 888 143 0 0 chr13 34394178 34394304 -85350594 + FLAM_C SINE Alu 1 126 -17 1926 101 58 0 chr13 34394332 34394608 -85350290 - AluSq SINE Alu -15 298 7 312 280 104 76 chr13 34395158 34395515 -85349383 - L1MC4 LINE L1 -145 7897 7531 1918 146 3 16 chr13 34395675 34395991 -85348907 - AluSx SINE Alu 0 312 1 1054 301 150 7 chr13 34396487 34396926 -85347972 - MLT1K LTR MaLR -16 572 71 233 261 0 34 chr13 34396994 34397113 -85347785 - L1M LINE L1 -792 5392 5278 25 0 0 0 chr13 34397214 34397239 -85347659 + AT_rich Low_complexity Low_complexity 1 25 0 231 300 89 0 chr13 34397252 34397342 -85347556 - L2 LINE L2 -1 3312 3215 213 293 182 0 chr13 34397789 34397888 -85347010 + MIR3 SINE MIR 70 186 -22 714 178 0 16 chr13 34397948 34398077 -85346821 + FLAM_C SINE Alu 1 127 -16 1508 167 79 24 chr13 34398320 34398661 -85346237 - MER46B DNA MER2_type 0 236 2 21 0 0 0 chr13 34399226 34399247 -85345651 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 34399949 34399970 -85344928 + AT_rich Low_complexity Low_complexity 1 21 0 3415 24 0 1 chr13 34400684 34401121 -85343777 - L1P1 LINE L1 -490 5665 5230 2851 43 0 0 chr13 34401123 34401494 -85343404 + L1PA2 LINE L1 5808 6178 0 2218 78 0 0 chr13 34401579 34401896 -85343002 + AluY SINE Alu 1 317 0 23 33 0 0 chr13 34402517 34402547 -85342351 + AT_rich Low_complexity Low_complexity 1 30 0 1350 186 16 51 chr13 34403889 34404062 -85340836 - AluJo SINE Alu -11 301 142 2386 99 0 0 chr13 34404062 34404374 -85340524 - AluSx SINE Alu 0 312 1 1350 186 16 51 chr13 34404374 34404512 -85340386 - AluJo SINE Alu -170 142 1 568 328 164 42 chr13 34404663 34405585 -85339313 + L2 LINE L2 1653 2686 -628 1574 153 15 37 chr13 34407457 34407783 -85337115 - MER33 DNA MER1_type 0 324 6 25 0 0 0 chr13 34408125 34408150 -85336748 + AT_rich Low_complexity Low_complexity 1 25 0 227 258 164 47 chr13 34408867 34408995 -85335903 + MIR SINE MIR 114 256 -6 261 265 214 0 chr13 34410481 34410579 -85334319 - L2 LINE L2 -8 3264 3146 265 217 103 143 chr13 34410633 34410836 -85334062 - MIR SINE MIR -28 234 40 585 309 125 57 chr13 34411857 34412379 -85332519 - L2 LINE L2 0 3272 2719 185 246 175 0 chr13 34412652 34412709 -85332189 - MIR SINE MIR -57 151 85 396 0 0 0 chr13 34414521 34414565 -85330333 + (CA)n Simple_repeat Simple_repeat 1 44 0 658 292 114 17 chr13 34415038 34415584 -85329314 - L1MC4a LINE L1 -369 5796 5272 372 94 0 0 chr13 34415652 34415705 -85329193 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr13 34416195 34416217 -85328681 + AT_rich Low_complexity Low_complexity 1 22 0 307 256 139 22 chr13 34417148 34417285 -85327613 - MIR SINE MIR -77 185 33 716 261 61 13 chr13 34417310 34417540 -85327358 - MLT1H LTR MaLR -308 241 1 307 256 139 22 chr13 34418130 34418267 -85326631 - MIR SINE MIR -77 185 33 716 261 61 13 chr13 34418292 34418522 -85326376 - MLT1H LTR MaLR -308 241 1 263 258 155 97 chr13 34418538 34418848 -85326050 - MLT1H-int LTR MaLR -18 1353 1026 271 309 75 60 chr13 34419474 34419726 -85325172 - MLT1H-int LTR MaLR -827 544 289 533 267 109 70 chr13 34419832 34420345 -85324553 - MLT1H LTR MaLR 0 549 17 2050 144 21 21 chr13 34420512 34420938 -85323960 - LTR23 LTR ERV1 0 467 10 385 272 114 19 chr13 34421160 34421318 -85323580 - MIR SINE MIR -54 208 36 1941 158 0 0 chr13 34421449 34421753 -85323145 + AluSx SINE Alu 1 304 -8 338 264 224 17 chr13 34421838 34422012 -85322886 - L2 LINE L2 0 3313 3104 2282 119 0 0 chr13 34422036 34422346 -85322552 + AluSg SINE Alu 1 310 0 800 299 27 14 chr13 34422377 34422624 -85322274 + MIR SINE MIR 3 252 -10 192 346 0 0 chr13 34423805 34423857 -85321041 - L2 LINE L2 -16 3256 3205 1064 193 0 33 chr13 34427603 34427815 -85317083 - AluJo SINE Alu -12 300 96 254 309 10 31 chr13 34427970 34428067 -85316831 - L2 LINE L2 0 3313 3219 9757 98 61 30 chr13 34428132 34429195 -85315703 - MER4-int LTR ERV1 -961 5637 4502 2379 79 13 0 chr13 34429195 34429500 -85315398 - AluY SINE Alu 0 311 3 9757 98 61 30 chr13 34429500 34430104 -85314794 - MER4-int LTR ERV1 -2096 4502 3918 839 134 134 56 chr13 34430092 34430324 -85314574 - MER4-int LTR ERV1 -3267 3331 3082 * 3454 202 58 11 chr13 34430431 34430526 -85314372 - L1M4 LINE L1 -639 5545 5456 1376 163 104 31 chr13 34430526 34430815 -85314083 - AluJo SINE Alu -2 310 1 3454 202 58 11 chr13 34430815 34431659 -85313239 - L1M4 LINE L1 -728 5456 4576 1420 208 31 0 chr13 34431659 34431952 -85312946 + MER58B DNA MER1_type 40 341 0 235 260 240 10 chr13 34432216 34432316 -85312582 - MIR3 SINE MIR -5 203 81 2438 87 32 9 chr13 34432401 34432917 -85311981 + MER51A LTR ERV1 1 604 -30 257 302 181 17 chr13 34433091 34433207 -85311691 - MIR SINE MIR -121 141 7 1130 154 0 75 chr13 34434460 34434687 -85310211 + AluJb SINE Alu 100 309 -3 1730 209 73 65 chr13 34434711 34435640 -85309258 + L1MD1 LINE L1 4906 5845 -397 3504 194 69 18 chr13 34435682 34436382 -85308516 - L1MB7 LINE L1 -9 6175 5431 2439 70 0 0 chr13 34436382 34436683 -85308215 - AluY SINE Alu -10 301 1 3504 194 69 18 chr13 34436683 34436746 -85308152 - L1MB7 LINE L1 -753 5431 5373 5296 145 36 30 chr13 34437176 34437860 -85307038 - L1MA7 LINE L1 0 6291 5612 279 0 0 0 chr13 34437860 34437891 -85307007 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1531 157 84 0 chr13 34437891 34438152 -85306746 - AluJb SINE Alu -29 283 1 5296 145 36 30 chr13 34438152 34438484 -85306414 - L1MA7 LINE L1 -678 5613 5268 213 294 29 0 chr13 34439216 34439284 -85305614 - MIR SINE MIR -18 244 175 1263 143 55 73 chr13 34439287 34439560 -85305338 + AluJb SINE Alu 35 302 -10 2230 93 0 3 chr13 34439606 34439897 -85305001 - AluSx SINE Alu -22 290 1 192 239 65 0 chr13 34440342 34440388 -85304510 - MIR SINE MIR -58 150 102 22 0 0 0 chr13 34442666 34442688 -85302210 + AT_rich Low_complexity Low_complexity 1 22 0 911 151 13 7 chr13 34443511 34443663 -85301235 - LTR32 LTR ERVL 0 471 319 1804 170 9 32 chr13 34443671 34444012 -85300886 - LTR32 LTR ERVL -125 346 14 209 315 0 0 chr13 34444081 34444135 -85300763 - L2 LINE L2 0 3272 3219 265 329 88 7 chr13 34444194 34444331 -85300567 - L2 LINE L2 -1 3312 3165 1469 271 126 11 chr13 34444353 34445064 -85299834 - L2 LINE L2 -5 3308 2513 256 355 127 0 chr13 34445300 34445410 -85299488 + L2 LINE L2 3128 3251 -21 1043 257 51 46 chr13 34445519 34445931 -85298967 + L2 LINE L2 2900 3313 0 296 333 42 8 chr13 34446028 34446148 -85298750 - L2 LINE L2 -13 3300 3177 34 55 0 0 chr13 34447776 34447831 -85297067 + AT_rich Low_complexity Low_complexity 1 55 0 314 281 61 43 chr13 34447900 34448178 -85296720 + L1ME LINE L1 3338 3647 -2499 357 93 0 0 chr13 34448279 34448333 -85296565 + (TG)n Simple_repeat Simple_repeat 1 54 0 227 274 63 11 chr13 34448363 34448458 -85296440 + L1ME LINE L1 4063 4162 -1984 447 323 100 31 chr13 34448491 34448872 -85296026 + L1ME LINE L1 4301 4707 -1439 281 329 0 20 chr13 34449221 34449373 -85295525 + L1P LINE L1 4885 5033 -1113 1799 153 0 27 chr13 34449587 34449882 -85295016 + AluJb SINE Alu 1 287 -25 21 0 0 0 chr13 34449882 34449903 -85294995 + AT_rich Low_complexity Low_complexity 1 21 0 584 292 30 15 chr13 34449903 34450167 -85294731 + L1ME LINE L1 5282 5549 -615 26 30 0 0 chr13 34451411 34451444 -85293454 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr13 34452370 34452405 -85292493 + AT_rich Low_complexity Low_complexity 1 35 0 1838 154 3 3 chr13 34453021 34453307 -85291591 + AluJb SINE Alu 4 289 -23 204 115 16 33 chr13 34454414 34454475 -85290423 + (TAAAA)n Simple_repeat Simple_repeat 3 62 0 29 28 0 0 chr13 34454757 34454793 -85290105 + AT_rich Low_complexity Low_complexity 1 36 0 196 328 0 0 chr13 34455479 34455540 -85289358 + MIR SINE MIR 79 139 -123 207 0 0 0 chr13 34456021 34456044 -85288854 + (A)n Simple_repeat Simple_repeat 1 23 0 416 191 43 0 chr13 34456690 34456784 -85288114 + MER5A DNA MER1_type 4 101 -88 387 145 0 0 chr13 34456891 34456953 -85287945 - L1MC5 LINE L1 -63 7898 7837 1554 167 60 0 chr13 34456991 34457272 -85287626 - AluSx SINE Alu -12 300 3 183 292 46 0 chr13 34458156 34458221 -85286677 - L2 LINE L2 -151 3121 3054 457 137 0 84 chr13 34458286 34458381 -85286517 + AluSg SINE Alu 4 90 -220 317 342 8 8 chr13 34458452 34458569 -85286329 + MIR SINE MIR 54 170 -92 2273 80 11 0 chr13 34458938 34459224 -85285674 + AluY SINE Alu 1 289 -22 203 211 0 35 chr13 34461465 34461522 -85283376 + CT-rich Low_complexity Low_complexity 3 57 0 4478 152 25 32 chr13 34462035 34462417 -85282481 + L1MB2 LINE L1 5349 5732 -439 2426 87 0 0 chr13 34462417 34462717 -85282181 + AluSg SINE Alu 1 300 -10 4478 152 25 32 chr13 34462717 34463157 -85281741 + L1MB2 LINE L1 5732 6166 -5 260 236 14 0 chr13 34463174 34463246 -85281652 - LTR33 LTR ERVL -53 468 396 378 274 194 30 chr13 34463276 34463477 -85281421 - LTR33 LTR ERVL -233 288 55 27 29 0 0 chr13 34464108 34464142 -85280756 + AT_rich Low_complexity Low_complexity 1 34 0 260 381 24 0 chr13 34465301 34465385 -85279513 - MER91A DNA MER1_type -110 86 1 24 0 0 0 chr13 34465957 34465981 -85278917 + AT_rich Low_complexity Low_complexity 1 24 0 1453 223 63 12 chr13 34466126 34466557 -85278341 + L1ME3 LINE L1 5561 6013 -149 277 146 0 0 chr13 34466596 34466644 -85278254 - L1ME3 LINE L1 -74 6088 6041 * 326 230 0 103 chr13 34466636 34466762 -85278136 + L1ME3 LINE L1 6020 6132 -30 589 234 24 18 chr13 34467102 34467269 -85277629 + MER104 DNA Tc2 7 174 -6 333 294 150 19 chr13 34467555 34467715 -85277183 - Charlie8 DNA MER1_type -2233 184 4 459 283 17 17 chr13 34467721 34467841 -85277057 + L2 LINE L2 3194 3313 0 199 222 0 0 chr13 34468274 34468310 -85276588 + MIR SINE MIR 222 257 -5 212 259 0 0 chr13 34469352 34469406 -85275492 - L2 LINE L2 -4 3309 3256 821 243 99 0 chr13 34471678 34471900 -85272998 + MIR SINE MIR 8 251 -11 377 244 13 13 chr13 34472310 34472388 -85272510 - L2 LINE L2 -6 3266 3189 2237 108 7 0 chr13 34472442 34472739 -85272159 - AluSg SINE Alu -11 299 1 1558 178 51 7 chr13 34472759 34473035 -85271863 - AluJo SINE Alu -21 291 4 243 0 0 0 chr13 34473055 34473082 -85271816 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr13 34473358 34473385 -85271513 + AT_rich Low_complexity Low_complexity 1 27 0 1435 104 22 5 chr13 34473685 34473907 -85270991 + L1PA10 LINE L1 5943 6168 0 258 274 11 53 chr13 34474862 34474957 -85269941 + L2 LINE L2 3215 3305 -8 391 318 48 8 chr13 34475115 34475241 -85269657 - L2 LINE L2 -4 3309 3179 1672 103 0 0 chr13 34475359 34475582 -85269316 + AluSg/x SINE Alu 72 294 -18 434 268 61 33 chr13 34476274 34476487 -85268411 - L1MCc LINE L1 -6180 243 25 1188 46 7 0 chr13 34477073 34477225 -85267673 + L1PA6 LINE L1 6002 6154 0 2445 58 0 3 chr13 34477226 34477520 -85267378 + AluY SINE Alu 1 293 -18 2457 45 0 0 chr13 34477646 34477937 -85266961 - AluY SINE Alu -20 291 1 2327 65 0 16 chr13 34478269 34478576 -85266322 - AluY SINE Alu -9 302 1 26 50 0 0 chr13 34480411 34480451 -85264447 + AT_rich Low_complexity Low_complexity 1 40 0 208 325 113 12 chr13 34481126 34481206 -85263692 - L2 LINE L2 0 3272 3185 21 57 0 0 chr13 34482873 34482908 -85261990 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 34483000 34483030 -85261868 + AT_rich Low_complexity Low_complexity 1 30 0 238 318 118 0 chr13 34483410 34483495 -85261403 - L2 LINE L2 -22 3291 3197 197 243 135 0 chr13 34485853 34485927 -85258971 + MIR SINE MIR 151 234 -28 21 0 0 0 chr13 34487610 34487631 -85257267 + AT_rich Low_complexity Low_complexity 1 21 0 3368 135 49 22 chr13 34487933 34488562 -85256336 - L1MA4 LINE L1 -6 6294 5649 25 0 0 0 chr13 34488661 34488686 -85256212 + AT_rich Low_complexity Low_complexity 1 25 0 399 271 83 44 chr13 34489564 34489745 -85255153 + MIR SINE MIR 49 236 -26 438 248 66 15 chr13 34489784 34489921 -85254977 - MIR SINE MIR -45 217 74 2004 134 0 3 chr13 34490525 34490824 -85254074 - AluSq SINE Alu -15 298 1 209 345 0 0 chr13 34490858 34490913 -85253985 + MIR SINE MIR 35 89 -119 * 218 267 13 27 chr13 34490906 34490981 -85253917 - L2 LINE L2 -330 2942 2869 195 100 0 0 chr13 34493212 34493242 -85251656 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 220 327 0 20 chr13 34493519 34493620 -85251278 + GA-rich Low_complexity Low_complexity 2 100 0 23 0 0 0 chr13 34494286 34494309 -85250589 + AT_rich Low_complexity Low_complexity 1 23 0 281 207 179 28 chr13 34494906 34495051 -85249847 + Charlie7 DNA MER1_type 2429 2595 -17 197 290 0 89 chr13 34495217 34495341 -85249557 - L2 LINE L2 -946 2368 2256 212 273 26 65 chr13 34498615 34498692 -85246206 - MER5A DNA MER1_type -1 188 115 2007 118 3 13 chr13 34499060 34499364 -85245534 - AluSx SINE Alu -11 301 1 209 333 69 10 chr13 34500625 34500727 -85244171 + MIR SINE MIR 120 227 -35 192 310 17 0 chr13 34500698 34500756 -85244142 + L2 LINE L2 3203 3261 -11 * 458 318 48 63 chr13 34500912 34501164 -85243734 + MLT1K LTR MaLR 156 403 -185 245 281 30 52 chr13 34501434 34501569 -85243329 + L1ME3A LINE L1 5596 5727 -435 685 224 37 70 chr13 34501585 34501826 -85243072 + L1ME3A LINE L1 5931 6163 -7 1535 168 84 4 chr13 34502101 34502375 -85242523 - MLT1A1 LTR MaLR 0 365 70 391 315 0 0 chr13 34502385 34502496 -85242402 + MIR SINE MIR 32 142 -66 2107 119 10 0 chr13 34502856 34503159 -85241739 - AluSx SINE Alu -6 306 1 1543 107 17 34 chr13 34503207 34503441 -85241457 - MER30 DNA MER1_type 0 230 1 255 252 26 61 chr13 34503718 34503833 -85241065 - MIR3 SINE MIR -32 176 66 302 301 75 11 chr13 34503969 34504062 -85240836 + L1MD3 LINE L1 6570 6668 -1327 * 345 287 46 0 chr13 34504054 34504141 -85240757 - L1MC4 LINE L1 -1337 6705 6615 334 200 0 36 chr13 34504159 34504269 -85240629 + (CATATA)n Simple_repeat Simple_repeat 4 109 0 1092 230 144 42 chr13 34504269 34504581 -85240317 - MLT2B1 LTR ERVL -40 480 111 1766 140 3 28 chr13 34504581 34504867 -85240031 - AluSx SINE Alu -32 280 2 1092 230 144 42 chr13 34504867 34504984 -85239914 - MLT2B1 LTR ERVL -409 111 7 2215 119 0 0 chr13 34506071 34506423 -85238475 + AluSx SINE Alu 1 352 0 225 278 35 35 chr13 34506482 34506597 -85238301 + L1MEd LINE L1 60 174 -5945 293 196 0 0 chr13 34506726 34506777 -85238121 + Tigger5 DNA MER2_type 1 51 -2272 360 216 34 11 chr13 34506784 34506872 -85238026 + Tigger5 DNA MER2_type 2234 2323 0 1775 98 0 16 chr13 34507199 34507445 -85237453 + AluSx SINE Alu 12 253 -59 483 241 48 54 chr13 34507472 34507638 -85237260 - MIR SINE MIR -16 246 82 2012 113 0 30 chr13 34507969 34508270 -85236628 - AluSx SINE Alu -20 292 1 263 349 0 0 chr13 34508388 34508474 -85236424 - L2 LINE L2 0 3313 3228 2623 135 114 27 chr13 34509695 34510155 -85234743 - LTR12 LTR ERV1 -227 487 1 1430 160 27 4 chr13 34510155 34510418 -85234480 - AluJo SINE Alu -33 279 11 1870 112 3 26 chr13 34510442 34510747 -85234151 - AluY SINE Alu -13 298 1 198 266 62 86 chr13 34511148 34511191 -85233707 - L3 LINE CR1 -156 1421 1379 1813 138 0 49 chr13 34511191 34511517 -85233381 - AluJb SINE Alu -2 310 1 198 266 62 86 chr13 34511517 34511601 -85233297 - L3 LINE CR1 -198 1379 1297 278 239 28 0 chr13 34512291 34512362 -85232536 + L1MEd LINE L1 6 78 -6041 432 327 116 56 chr13 34512577 34513060 -85231838 + L1MEd LINE L1 329 840 -5279 3106 167 70 27 chr13 34513106 34513693 -85231205 - LTR9 LTR ERV1 0 612 1 240 278 8 23 chr13 34513706 34513839 -85231059 + A-rich Low_complexity Low_complexity 4 134 0 2017 146 36 41 chr13 34514072 34514581 -85230317 + MLT2A2 LTR ERVL 1 416 -37 1787 116 90 0 chr13 34514582 34514859 -85230039 + AluSg SINE Alu 1 302 -8 991 193 104 56 chr13 34515954 34516132 -85228766 - MLT1B LTR MaLR 0 390 222 2041 133 0 13 chr13 34516132 34516448 -85228450 - AluSx SINE Alu 0 312 1 991 193 104 56 chr13 34516448 34516711 -85228187 - MLT1B LTR MaLR -168 222 3 185 326 47 12 chr13 34516797 34516883 -85228015 + MIR SINE MIR 20 108 -154 1612 184 25 69 chr13 34518154 34518562 -85226336 + MLT1B LTR MaLR 1 390 0 1330 195 110 74 chr13 34518792 34519239 -85225659 + MLT1C LTR MaLR 1 463 -4 217 240 0 40 chr13 34519649 34519699 -85225199 + L2 LINE L2 3225 3272 0 446 245 224 47 chr13 34519742 34520193 -85224705 - MLT1F LTR MaLR -5 588 4 195 310 28 0 chr13 34520318 34520389 -85224509 - MIR SINE MIR -42 220 148 1947 115 38 0 chr13 34520488 34520776 -85224122 - AluSx SINE Alu -13 299 1 1546 162 6 38 chr13 34522302 34522617 -85222281 + AluJo SINE Alu 1 305 -7 700 173 0 8 chr13 34525574 34525701 -85219197 + FLAM_C SINE Alu 3 128 -5 2001 135 3 3 chr13 34525712 34526024 -85218874 + AluSx SINE Alu 1 312 0 1150 214 158 15 chr13 34526333 34526740 -85218158 + MLT2B1 LTR ERVL 1 464 0 923 197 25 20 chr13 34526901 34527099 -85217799 + MLT1D LTR MaLR 8 206 -299 3650 192 38 57 chr13 34527114 34527735 -85217163 + L1MB8 LINE L1 4996 5584 -594 309 51 0 0 chr13 34527735 34527774 -85217124 + (TG)n Simple_repeat Simple_repeat 1 39 0 3650 192 38 57 chr13 34527774 34528357 -85216541 + L1MB8 LINE L1 5584 6177 -1 1814 213 44 14 chr13 34528370 34528806 -85216092 - L1MC4a LINE L1 -422 7386 6938 183 388 0 0 chr13 34528823 34528908 -85215990 - L2 LINE L2 0 3272 3188 265 323 119 55 chr13 34529304 34529741 -85215157 - L2 LINE L2 -814 2500 2036 2182 67 0 11 chr13 34530000 34530283 -85214615 + AluSx SINE Alu 1 280 -32 216 86 0 0 chr13 34530283 34530318 -85214580 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1840 135 0 21 chr13 34531352 34531678 -85213220 - AluSx SINE Alu 0 320 1 1294 255 28 28 chr13 34532008 34532146 -85212752 + LTR16A LTR ERVL 68 205 -245 2787 81 3 18 chr13 34532146 34532527 -85212371 + THE1C LTR MaLR 1 375 0 1294 255 28 28 chr13 34532527 34532749 -85212149 + LTR16A LTR ERVL 204 428 -22 940 197 22 0 chr13 34532757 34532940 -85211958 + MER53 DNA DNA 3 189 0 437 230 0 0 chr13 34534223 34534323 -85210575 - L1MB7 LINE L1 -8 6176 6077 427 194 0 0 chr13 34534494 34534566 -85210332 + Tigger7 DNA MER2_type 272 343 -207 * 947 129 14 7 chr13 34534561 34534708 -85210190 + Tigger7 DNA MER2_type 2439 2586 -1 1982 148 0 0 chr13 34534732 34535037 -85209861 - AluSx SINE Alu -7 305 1 277 270 56 0 chr13 34535057 34535146 -85209752 - MLT1J LTR MaLR -416 95 2 327 282 115 70 chr13 34535180 34535510 -85209388 - MLT2C1 LTR ERVL 0 397 53 * 557 253 51 13 chr13 34535384 34535542 -85209356 - MLT1E3 LTR MaLR -420 204 41 * 583 224 52 15 chr13 34535539 34535673 -85209225 - MLT2F LTR ERVL -524 139 1 231 341 0 0 chr13 34535690 34535772 -85209126 - MLT1K LTR MaLR -324 264 183 211 396 32 19 chr13 34536538 34536692 -85208206 + L2 LINE L2 3113 3268 -4 247 174 0 0 chr13 34537005 34537051 -85207847 + L2 LINE L2 3226 3271 -1 423 223 19 167 chr13 34537182 34537397 -85207501 - MIR SINE MIR -14 248 66 2239 213 63 29 chr13 34537615 34538039 -85206859 + L1ME1 LINE L1 5590 6039 -127 745 192 0 0 chr13 34538039 34538169 -85206729 - FLAM_C SINE Alu -3 130 1 2239 213 63 29 chr13 34538169 34538297 -85206601 + L1ME1 LINE L1 6039 6161 -5 359 294 61 31 chr13 34539799 34539962 -85204936 + MIR SINE MIR 84 251 -11 189 359 33 0 chr13 34539963 34540055 -85204843 + MIR SINE MIR 21 115 -93 367 167 0 64 chr13 34541638 34541716 -85203182 + ORSL DNA AcHobo 1 73 -202 461 164 82 74 chr13 34541718 34541843 -85203055 - L1PB4 LINE L1 -6 6150 6023 1322 115 0 0 chr13 34541947 34542130 -85202768 - AluSg/x SINE Alu -5 307 125 180 0 0 0 chr13 34544600 34544620 -85200278 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 276 193 0 18 chr13 34544848 34544905 -85199993 + L2 LINE L2 3255 3310 -3 198 0 0 0 chr13 34544942 34544964 -85199934 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 693 171 34 0 chr13 34546297 34546414 -85198484 + FLAM_A SINE Alu 11 131 -11 258 81 0 0 chr13 34547160 34547197 -85197701 + (TG)n Simple_repeat Simple_repeat 2 38 0 553 329 24 24 chr13 34549445 34549658 -85195240 - MIR SINE MIR -4 258 46 846 146 7 36 chr13 34549806 34550010 -85194888 + FLAM_C SINE Alu 1 200 0 1691 218 105 18 chr13 34551048 34551648 -85193250 - Charlie2 DNA MER1_type -11 2851 2200 705 292 42 39 chr13 34551626 34551845 -85193053 - Charlie2 DNA MER1_type -2469 313 91 * 2272 120 3 0 chr13 34551845 34552154 -85192744 - AluSx SINE Alu -2 310 1 705 292 42 39 chr13 34552154 34552246 -85192652 - Charlie2 DNA MER1_type -2691 91 1 322 269 170 6 chr13 34552311 34552482 -85192416 + MIR SINE MIR 5 203 -59 2390 100 3 0 chr13 34552566 34552877 -85192021 + AluSx SINE Alu 1 312 0 541 329 38 14 chr13 34553399 34553612 -85191286 + MIR SINE MIR 20 237 -25 458 209 9 0 chr13 34553612 34553717 -85191181 + L1M4 LINE L1 4109 4214 -1932 189 107 0 0 chr13 34554580 34554608 -85190290 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 336 239 0 54 chr13 34554776 34554868 -85190030 + MLT1B LTR MaLR 1 87 -287 3053 146 35 28 chr13 34554874 34555671 -85189227 - MER21A LTR ERV1 -6 925 1 1017 231 50 43 chr13 34555671 34555970 -85188928 + MLT1B LTR MaLR 89 389 -1 2130 118 16 7 chr13 34556385 34556689 -85188209 - AluSx SINE Alu -5 307 1 520 152 8 104 chr13 34557207 34557276 -85187622 + L1MB5 LINE L1 6056 6109 -65 2259 111 0 0 chr13 34557276 34557565 -85187333 - AluSx SINE Alu -23 289 1 520 152 8 104 chr13 34557565 34557620 -85187278 + L1MB5 LINE L1 6109 6168 -6 189 0 0 0 chr13 34557620 34557641 -85187257 + (T)n Simple_repeat Simple_repeat 1 21 0 583 225 139 6 chr13 34558672 34558845 -85186053 + L2 LINE L2 2600 2795 -519 559 226 158 0 chr13 34558876 34559022 -85185876 - MER39 LTR ERV1 -279 428 260 277 293 110 12 chr13 34558999 34559081 -85185817 - MER39 LTR ERV1 -574 133 44 * 1458 169 43 14 chr13 34559081 34559360 -85185538 + AluJo SINE Alu 1 287 -25 195 69 0 0 chr13 34559375 34559404 -85185494 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 298 245 0 0 chr13 34559440 34559493 -85185405 - MER39 LTR ERV1 -654 53 1 247 202 222 61 chr13 34559493 34559592 -85185306 + L2 LINE L2 3192 3306 -7 2125 138 0 0 chr13 34559672 34559968 -85184930 - AluSx SINE Alu -16 296 1 878 274 16 12 chr13 34559969 34560217 -85184681 - MER82 DNA MER2_type -23 630 382 3293 83 25 23 chr13 34560636 34561079 -85183819 + MLT2A1 LTR ERVL 1 444 0 2567 204 72 63 chr13 34561334 34561581 -85183317 + MER72 LTR ERV1 5 248 -474 2388 134 34 17 chr13 34561581 34561939 -85182959 + THE1B LTR MaLR 1 364 0 2567 204 72 63 chr13 34561939 34562353 -85182545 + MER72 LTR ERV1 248 675 -47 2046 145 0 0 chr13 34562353 34562649 -85182249 + AluSx SINE Alu 1 296 -16 2567 204 72 63 chr13 34562649 34562697 -85182201 + MER72 LTR ERV1 675 721 -1 394 182 0 15 chr13 34562702 34562765 -85182133 + MER34C LTR ERV1 5 66 -519 2027 97 7 17 chr13 34562765 34563065 -85181833 - MER41A LTR ERV1 0 554 258 608 172 8 30 chr13 34563307 34563441 -85181457 - LTR9 LTR ERV1 -172 440 310 1259 124 143 42 chr13 34563588 34563847 -85181051 - LTR9 LTR ERV1 -327 285 1 1925 81 19 0 chr13 34563847 34564106 -85180792 - MER41A LTR ERV1 -290 264 1 2203 162 58 75 chr13 34564106 34564638 -85180260 + MER34C LTR ERV1 63 585 0 1461 203 110 42 chr13 34564749 34565202 -85179696 - LTR29 LTR ERV1 -2 620 137 303 289 0 0 chr13 34565207 34565283 -85179615 - MER34 LTR ERV1 -446 96 21 1315 193 26 30 chr13 34565440 34565615 -85179283 + MER49 LTR ERV1 25 200 -723 4516 78 9 2 chr13 34565615 34566165 -85178733 - MER41A LTR ERV1 0 554 1 1315 193 26 30 chr13 34566165 34566259 -85178639 + MER49 LTR ERV1 200 293 -630 1606 200 31 31 chr13 34566295 34566650 -85178248 + MER4D LTR ERV1 549 903 0 2139 183 17 32 chr13 34566924 34567227 -85177671 - L1MB7 LINE L1 0 6184 5889 3851 151 48 5 chr13 34567227 34567836 -85177062 - MER41B LTR ERV1 0 635 1 2139 183 17 32 chr13 34567836 34567996 -85176902 - L1MB7 LINE L1 -295 5889 5728 276 176 50 34 chr13 34568233 34568352 -85176546 + LTR48 LTR ERV1 433 536 -6 1060 194 31 15 chr13 34568357 34568645 -85176253 - L1MB7 LINE L1 -447 5731 5374 1418 208 49 3 chr13 34568684 34568972 -85175926 - AluJo SINE Alu -11 301 1 221 258 0 48 chr13 34569524 34569586 -85175312 + L2 LINE L2 1886 1944 -1370 3492 144 62 17 chr13 34569627 34569717 -85175181 - LTR31 LTR ERV1 0 619 535 522 31 0 0 chr13 34569717 34569781 -85175117 + (CAAG)n Simple_repeat Simple_repeat 1 64 0 3492 144 62 17 chr13 34569781 34570282 -85174616 - LTR31 LTR ERV1 -84 535 1 11920 169 46 21 chr13 34570358 34573082 -85171816 - L1MA3 LINE L1 -1 7723 5070 4085 101 28 14 chr13 34573082 34573595 -85171303 + L1PB1 LINE L1 5571 6100 -51 2079 120 43 7 chr13 34573595 34573895 -85171003 + AluSx SINE Alu 1 311 -1 4085 101 28 14 chr13 34573895 34573947 -85170951 + L1PB1 LINE L1 6100 6150 -1 11920 169 46 21 chr13 34573947 34574409 -85170489 - L1MA3 LINE L1 -2654 5070 4621 2565 160 34 14 chr13 34574409 34574827 -85170071 - MSTB LTR MaLR 0 426 1 11920 169 46 21 chr13 34574827 34576656 -85168242 - L1MA3 LINE L1 -3103 4621 2570 637 302 143 47 chr13 34576741 34577094 -85167804 + L2 LINE L2 2260 2578 -735 3523 142 38 28 chr13 34577094 34577698 -85167200 - MER4B LTR ERV1 0 610 1 637 302 143 47 chr13 34577698 34577793 -85167105 + L2 LINE L2 2578 2663 -650 3261 146 66 9 chr13 34577793 34578356 -85166542 - LTR49 LTR ERV1 0 595 1 637 302 143 47 chr13 34578356 34578860 -85166038 + L2 LINE L2 2663 3313 0 198 367 102 9 chr13 34578905 34579131 -85165767 - L2 LINE L2 -565 2749 2503 2674 159 19 80 chr13 34579160 34579725 -85165173 + LTR8 LTR ERV1 158 688 -3 209 333 21 21 chr13 34579783 34579879 -85165019 - L2 LINE L2 -929 2385 2290 3577 128 10 2 chr13 34579951 34580461 -85164437 - MER75 DNA T2_type 0 514 1 3037 144 35 46 chr13 34580652 34581215 -85163683 + MER89 LTR ERV1 3 559 0 437 209 6 16 chr13 34583387 34583569 -85161329 + (CA)n Simple_repeat Simple_repeat 1 180 0 563 218 0 6 chr13 34583590 34583764 -85161134 + (CA)n Simple_repeat Simple_repeat 2 174 0 564 191 17 12 chr13 34583787 34583960 -85160938 + (CATA)n Simple_repeat Simple_repeat 1 174 0 563 226 3 0 chr13 34583965 34584292 -85160606 + (CA)n Simple_repeat Simple_repeat 1 328 0 378 222 0 17 chr13 34584325 34584501 -85160397 + (CA)n Simple_repeat Simple_repeat 1 173 0 420 258 0 0 chr13 34584520 34584698 -85160200 + (CA)n Simple_repeat Simple_repeat 2 179 0 612 228 0 7 chr13 34584718 34585022 -85159876 + (CA)n Simple_repeat Simple_repeat 1 302 0 560 215 12 0 chr13 34585027 34585199 -85159699 + (CATA)n Simple_repeat Simple_repeat 4 177 0 516 240 0 0 chr13 34585241 34585420 -85159478 + (CA)n Simple_repeat Simple_repeat 2 180 0 252 0 0 0 chr13 34586675 34586703 -85158195 + (A)n Simple_repeat Simple_repeat 1 28 0 311 277 67 111 chr13 34587431 34587817 -85157081 + L2 LINE L2 2877 3245 -27 720 142 59 16 chr13 34588325 34588578 -85156320 + CT-rich Low_complexity Low_complexity 1 264 0 202 128 64 0 chr13 34588590 34588637 -85156261 + CT-rich Low_complexity Low_complexity 2 51 0 282 299 0 19 chr13 34589388 34589495 -85155403 + 7SK RNA RNA 1 105 -88 229 236 91 36 chr13 34598932 34599042 -85145856 - L1ME LINE L1 -229 5892 5777 785 300 14 18 chr13 34599074 34599297 -85145601 - MIR SINE MIR -12 250 29 610 295 25 17 chr13 34599430 34599673 -85145225 - L1ME LINE L1 -449 5672 5451 432 333 55 52 chr13 34599932 34600262 -85144636 - L3 LINE CR1 -54 1523 1193 253 283 100 99 chr13 34600345 34600806 -85144092 - L3 LINE CR1 -587 990 476 25 0 0 0 chr13 34601352 34601377 -85143521 + AT_rich Low_complexity Low_complexity 1 25 0 303 140 0 0 chr13 34601410 34601460 -85143438 + (CATA)n Simple_repeat Simple_repeat 1 50 0 203 86 0 29 chr13 34601617 34601652 -85143246 + (CTCA)n Simple_repeat Simple_repeat 2 35 0 180 222 0 0 chr13 34603174 34603210 -85141688 + L3 LINE CR1 1456 1491 -86 205 156 0 0 chr13 34603825 34603857 -85141041 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 321 45 52 chr13 34605263 34605397 -85139501 - MER5B DNA MER1_type -5 173 41 2338 100 3 0 chr13 34605425 34605725 -85139173 - AluSp SINE Alu -12 301 1 358 296 37 69 chr13 34606384 34606573 -85138325 - MIR SINE MIR -7 255 73 1805 158 3 22 chr13 34606882 34607198 -85137700 - AluSx SINE Alu -2 310 1 1259 136 0 25 chr13 34608332 34608530 -85136368 + AluJb SINE Alu 113 305 -7 429 292 61 37 chr13 34609279 34609449 -85135449 + MIR SINE MIR 23 192 -63 2036 132 0 10 chr13 34610302 34610609 -85134289 - AluSx SINE Alu 0 304 1 2080 129 3 0 chr13 34610620 34610907 -85133991 - AluSx SINE Alu -24 288 1 362 205 291 8 chr13 34611039 34611166 -85133732 + MER5A DNA MER1_type 27 189 0 1786 177 0 7 chr13 34611473 34611773 -85133125 - AluSx SINE Alu -14 298 1 770 117 50 0 chr13 34613391 34613511 -85131387 - L1MB3 LINE L1 -4 6179 6054 192 385 24 0 chr13 34613551 34613634 -85131264 + L2 LINE L2 2969 3053 -219 516 234 33 181 chr13 34613703 34614101 -85130797 - L2 LINE L2 -1 3312 2974 2294 79 3 25 chr13 34614813 34615129 -85129769 + AluY SINE Alu 1 309 -2 280 246 109 69 chr13 34615218 34615393 -85129505 + L2 LINE L2 2205 2386 -928 361 363 70 18 chr13 34615924 34615973 -85128925 + L2 LINE L2 3078 3123 -149 2183 174 9 0 chr13 34615973 34616318 -85128580 + MER7A DNA MER2_type 1 346 0 361 363 70 18 chr13 34616318 34616439 -85128459 + L2 LINE L2 3123 3257 -15 215 293 93 0 chr13 34617098 34617173 -85127725 + L2 LINE L2 3232 3313 0 361 60 20 0 chr13 34617373 34617423 -85127475 - Alu SINE Alu -252 51 1 862 225 63 28 chr13 34619959 34620212 -85124686 + L1ME3A LINE L1 5909 6170 0 329 170 32 11 chr13 34620610 34620704 -85124194 + (TA)n Simple_repeat Simple_repeat 2 97 0 26 30 0 0 chr13 34624536 34624569 -85120329 + AT_rich Low_complexity Low_complexity 1 33 0 233 224 0 0 chr13 34624919 34624968 -85119930 + A-rich Low_complexity Low_complexity 2 50 0 195 247 101 45 chr13 34625381 34625470 -85119428 - L3b LINE CR1 -147 1436 1343 427 215 103 9 chr13 34625659 34625766 -85119132 + L2 LINE L2 3197 3313 0 373 318 9 9 chr13 34625994 34626104 -85118794 - L2 LINE L2 0 3272 3163 2190 103 6 25 chr13 34627071 34627390 -85117508 + AluSp SINE Alu 1 313 0 1986 147 10 10 chr13 34627691 34628003 -85116895 + AluSx SINE Alu 1 312 0 25 0 0 0 chr13 34628456 34628481 -85116417 + AT_rich Low_complexity Low_complexity 1 25 0 306 241 72 33 chr13 34628669 34628816 -85116082 - MIR SINE MIR -51 211 61 180 0 0 0 chr13 34629074 34629094 -85115804 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 278 308 33 33 chr13 34629287 34629407 -85115491 + MIR SINE MIR 28 147 -115 270 315 11 0 chr13 34630330 34630422 -85114476 + L1ME LINE L1 5726 5818 -303 2407 86 0 0 chr13 34630740 34631041 -85113857 + AluSq SINE Alu 2 302 -11 1278 147 13 55 chr13 34631873 34632111 -85112787 - AluJo SINE Alu 0 312 85 252 0 0 0 chr13 34633090 34633118 -85111780 + (CA)n Simple_repeat Simple_repeat 1 28 0 263 313 76 15 chr13 34633736 34633867 -85111031 - MER91C DNA MER1_type -1 139 1 1870 147 0 11 chr13 34633929 34634214 -85110684 - AluJo SINE Alu -30 282 1 222 344 50 32 chr13 34634531 34634752 -85110146 + L2 LINE L2 2827 3051 -221 22 56 0 0 chr13 34638202 34638238 -85106660 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr13 34638789 34638835 -85106063 + AT_rich Low_complexity Low_complexity 1 46 0 293 197 16 0 chr13 34639201 34639262 -85105636 - L1ME4a LINE L1 -71 6050 5989 227 290 190 0 chr13 34640675 34640775 -85104123 - L2 LINE L2 0 3313 3195 1317 183 5 9 chr13 34640820 34641044 -85103854 - MER58A DNA MER1_type -1 223 1 337 302 84 11 chr13 34641344 34641523 -85103375 - MIR SINE MIR -50 212 21 870 126 68 5 chr13 34641579 34641769 -85103129 - AluSq SINE Alu -22 291 90 369 362 73 6 chr13 34642480 34642657 -85102241 - MIR3 SINE MIR -15 193 5 820 290 122 52 chr13 34643596 34644120 -85100778 + MLT1K LTR MaLR 25 585 -3 180 0 0 0 chr13 34644218 34644238 -85100660 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 517 92 0 0 chr13 34644247 34644312 -85100586 - AluSq SINE Alu -34 279 215 1295 87 46 0 chr13 34644313 34644486 -85100412 - AluSq SINE Alu -132 181 1 2575 70 3 0 chr13 34645182 34645494 -85099404 + AluSp SINE Alu 1 313 0 423 295 70 0 chr13 34646290 34646419 -85098479 - MIR SINE MIR -75 187 50 564 167 0 9 chr13 34647513 34647621 -85097277 + MER50 LTR ERV1 499 605 -129 1982 107 4 18 chr13 34649045 34649317 -85095581 + AluSx SINE Alu 1 268 -44 1791 149 10 34 chr13 34650950 34651246 -85093652 + AluJo SINE Alu 1 289 -23 217 226 95 36 chr13 34651445 34651529 -85093369 + L2 LINE L2 3175 3263 -9 350 308 142 24 chr13 34653323 34653492 -85091406 + MIR SINE MIR 3 191 -71 721 331 23 43 chr13 34657987 34658186 -85086712 - L3 LINE CR1 -4 1573 1382 1596 59 0 20 chr13 34658186 34658388 -85086510 + AluY SINE Alu 114 311 0 721 331 23 43 chr13 34658388 34658535 -85086363 - L3 LINE CR1 -195 1382 1234 683 162 8 17 chr13 34658535 34658652 -85086246 + FLAM_A SINE Alu 19 134 -8 349 349 176 6 chr13 34658654 34658984 -85085914 - L3 LINE CR1 -483 1094 709 197 284 30 15 chr13 34660851 34660918 -85083980 - L3 LINE CR1 -124 1453 1386 2106 132 0 0 chr13 34661165 34661452 -85083446 + AluSx SINE Alu 3 289 -23 31 58 0 0 chr13 34661566 34661618 -85083280 + AT_rich Low_complexity Low_complexity 1 52 0 333 68 0 0 chr13 34663813 34663857 -85081041 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr13 34666205 34666235 -85078663 + AT_rich Low_complexity Low_complexity 1 30 0 387 60 0 0 chr13 34668170 34668220 -85076678 + (TG)n Simple_repeat Simple_repeat 2 51 0 184 184 0 26 chr13 34668637 34668675 -85076223 + L2 LINE L2 3221 3257 -15 217 359 0 0 chr13 34669482 34669560 -85075338 - MIR SINE MIR -82 126 49 565 278 84 16 chr13 34673006 34673197 -85071701 - MIR SINE MIR -58 204 1 4296 125 7 0 chr13 34673269 34673867 -85071031 + LTR43 LTR ERV1 1 602 0 347 304 35 94 chr13 34674100 34674527 -85070371 - L2 LINE L2 -452 2862 2461 248 353 76 8 chr13 34674599 34674718 -85070180 - MIR SINE MIR -116 146 20 568 91 13 0 chr13 34674843 34674920 -85069978 - MADE1 DNA Mariner -2 78 1 21 0 0 0 chr13 34676772 34676793 -85068105 + AT_rich Low_complexity Low_complexity 1 21 0 2909 0 0 0 chr13 34677408 34677715 -85067183 + AluYa5 SINE Alu 1 307 -4 1746 187 13 10 chr13 34677766 34678076 -85066822 - AluJo SINE Alu -1 311 1 430 94 0 0 chr13 34678327 34678380 -85066518 + Alu SINE Alu 240 292 -20 242 231 125 58 chr13 34678732 34678836 -85066062 + L2 LINE L2 3161 3271 -1 277 318 33 26 chr13 34679177 34679328 -85065570 + MIR SINE MIR 32 183 -79 1159 145 224 59 chr13 34679578 34679833 -85065065 - AluSg SINE Alu -3 297 1 926 69 15 0 chr13 34680973 34681103 -85063795 + (GAAA)n Simple_repeat Simple_repeat 3 134 0 2561 50 3 0 chr13 34681147 34681445 -85063453 - AluY SINE Alu -12 299 1 2135 133 0 3 chr13 34681905 34682213 -85062685 - AluSx SINE Alu -3 309 3 792 217 30 6 chr13 34682773 34682939 -85061959 - MER5A DNA MER1_type -3 186 17 335 250 149 42 chr13 34682952 34683120 -85061778 + MER5A DNA MER1_type 4 189 0 291 226 16 0 chr13 34685488 34685550 -85059348 - MIR3 SINE MIR -50 158 96 236 298 8 66 chr13 34687638 34687759 -85057139 - L3 LINE CR1 -40 1537 1424 1995 67 85 4 chr13 34688158 34688428 -85056470 + L1MA3 LINE L1 6010 6301 -4 2082 127 10 0 chr13 34688430 34688721 -85056177 - AluSx SINE Alu -18 294 1 22 0 0 0 chr13 34688721 34688743 -85056155 + AT_rich Low_complexity Low_complexity 1 22 0 258 276 60 60 chr13 34689126 34689260 -85055638 - MLT1J LTR MaLR -48 463 330 514 196 29 65 chr13 34689473 34689611 -85055287 - MER20 DNA MER1_type -86 133 1 241 313 33 58 chr13 34690259 34690499 -85054399 - Tigger2 DNA MER2_type -1468 1250 1017 2876 168 27 35 chr13 34690653 34691217 -85053681 + MER89 LTR ERV1 1 559 0 1230 250 128 25 chr13 34691646 34692038 -85052860 - MLT1D LTR MaLR -17 488 57 222 333 103 0 chr13 34692134 34692212 -85052686 + L2 LINE L2 2720 2805 -509 186 328 30 60 chr13 34692261 34692395 -85052503 + L2 LINE L2 2896 3025 -247 * 586 286 124 32 chr13 34692393 34692708 -85052190 - L2 LINE L2 0 3313 2970 398 296 162 42 chr13 34692710 34692818 -85052080 - L2 LINE L2 -482 2832 2738 2736 130 30 28 chr13 34692818 34693249 -85051649 + MSTB1 LTR MaLR 1 432 0 398 296 162 42 chr13 34693249 34693448 -85051450 - L2 LINE L2 -576 2738 2488 261 288 36 27 chr13 34693614 34693725 -85051173 + MER5B DNA MER1_type 43 154 -24 186 43 0 0 chr13 34694981 34695004 -85049894 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 83 0 0 chr13 34695644 34695946 -85048952 - AluY SINE Alu -8 303 2 793 195 39 0 chr13 34697405 34697533 -85047365 + FLAM_A SINE Alu 1 133 0 25 0 0 0 chr13 34698655 34698680 -85046218 + AT_rich Low_complexity Low_complexity 1 25 0 303 155 48 36 chr13 34698955 34699039 -85045859 - HAL1b LINE L1 0 1348 1264 22 0 0 0 chr13 34699767 34699789 -85045109 + AT_rich Low_complexity Low_complexity 1 22 0 729 267 146 39 chr13 34699996 34700531 -85044367 - L1MC4a LINE L1 -1926 5882 5291 25 0 0 0 chr13 34700882 34700907 -85043991 + AT_rich Low_complexity Low_complexity 1 25 0 1193 118 0 6 chr13 34701118 34701287 -85043611 + L1MB8 LINE L1 6011 6178 0 247 167 0 0 chr13 34703048 34703090 -85041808 - MIR SINE MIR -3 259 218 199 184 26 0 chr13 34703057 34703095 -85041803 - L2 LINE L2 -18 3254 3216 * 1175 142 12 0 chr13 34703097 34703266 -85041632 + Tigger4(Zombi) DNA MER2_type 3 173 -2558 3568 112 29 11 chr13 34703268 34703763 -85041135 + Tigger4(Zombi) DNA MER2_type 2170 2677 -54 182 62 31 0 chr13 34703763 34703795 -85041103 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3568 112 29 11 chr13 34703795 34703851 -85041047 + Tigger4(Zombi) DNA MER2_type 2677 2731 0 336 269 59 34 chr13 34703909 34704028 -85040870 - MIR SINE MIR -117 145 24 1479 179 32 65 chr13 34704583 34704891 -85040007 - AluJo SINE Alu -14 298 1 2217 119 3 0 chr13 34705891 34706194 -85038704 + AluSq SINE Alu 1 304 -9 203 277 78 92 chr13 34706767 34707038 -85037860 - L2 LINE L2 -494 2820 2554 2080 132 3 0 chr13 34708371 34708667 -85036231 - AluJb SINE Alu -7 305 9 279 0 0 0 chr13 34708973 34709004 -85035894 + (TG)n Simple_repeat Simple_repeat 1 31 0 213 39 0 0 chr13 34709003 34709029 -85035869 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2201 116 0 13 chr13 34709877 34710179 -85034719 - AluSx SINE Alu -14 298 1 1101 132 68 29 chr13 34710253 34710458 -85034440 - MER20 DNA MER1_type 0 219 7 2248 118 0 16 chr13 34710839 34711152 -85033746 + AluSx SINE Alu 1 308 -4 329 382 0 0 chr13 34711782 34711913 -85032985 - MIR SINE MIR -117 145 15 344 250 144 30 chr13 34711928 34712060 -85032838 - MER117 DNA MER1_type -9 188 42 52 0 0 0 chr13 34712581 34712633 -85032265 + AT_rich Low_complexity Low_complexity 1 52 0 1867 111 89 0 chr13 34713856 34714126 -85030772 - AluSx SINE Alu -18 294 1 570 239 81 47 chr13 34714503 34714737 -85030161 + L2 LINE L2 3051 3292 -21 360 310 94 61 chr13 34714891 34715285 -85029613 + MLT1K LTR MaLR 128 534 -54 1094 129 0 12 chr13 34715298 34715461 -85029437 + AluSx SINE Alu 1 161 -151 22 0 0 0 chr13 34715948 34715970 -85028928 + AT_rich Low_complexity Low_complexity 1 22 0 2247 176 23 45 chr13 34716472 34716785 -85028113 + MER65C LTR ERV1 1 302 -159 1671 208 0 0 chr13 34716785 34717097 -85027801 - AluJb SINE Alu 0 312 1 2247 176 23 45 chr13 34717097 34717254 -85027644 + MER65C LTR ERV1 302 461 0 27 62 0 0 chr13 34717544 34717592 -85027306 + AT_rich Low_complexity Low_complexity 1 48 0 407 171 0 0 chr13 34718124 34718194 -85026704 + MER65C LTR ERV1 249 318 -143 226 204 0 0 chr13 34718193 34718237 -85026661 - AluSq SINE Alu -3 299 256 * 2091 125 0 0 chr13 34718290 34718570 -85026328 - AluSq SINE Alu -33 280 1 523 268 146 5 chr13 34719004 34719217 -85025681 + MIR SINE MIR 18 260 -2 414 57 0 0 chr13 34719222 34719275 -85025623 + (TG)n Simple_repeat Simple_repeat 2 54 0 2186 94 7 36 chr13 34720636 34720945 -85023953 + AluY SINE Alu 1 300 -11 299 284 159 5 chr13 34721522 34721730 -85023168 + MIR SINE MIR 10 249 -13 2475 186 243 70 chr13 34721846 34722716 -85022182 + LTR28 LTR ERV1 1 1020 0 2028 135 0 7 chr13 34723670 34723967 -85020931 + AluJb SINE Alu 1 295 -17 489 34 0 0 chr13 34723967 34724026 -85020872 + (TA)n Simple_repeat Simple_repeat 2 60 0 1891 170 3 0 chr13 34724069 34724369 -85020529 + AluJb SINE Alu 1 301 -11 206 368 53 0 chr13 34724445 34724521 -85020377 + L2 LINE L2 3168 3247 -25 1754 154 16 20 chr13 34725053 34725359 -85019539 + AluJo SINE Alu 1 305 -7 280 322 0 11 chr13 34726190 34726280 -85018618 + CT-rich Low_complexity Low_complexity 2 90 0 210 191 24 0 chr13 34726321 34726363 -85018535 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1295 206 45 76 chr13 34726499 34726961 -85017937 + MER39 LTR ERV1 260 707 0 268 169 169 56 chr13 34728231 34728302 -85016596 - L2 LINE L2 -2 3311 3233 1945 110 37 33 chr13 34728527 34728826 -85016072 - AluSx SINE Alu -12 300 1 888 141 0 16 chr13 34729313 34729441 -85015457 + FLAM_C SINE Alu 1 126 -7 429 257 7 59 chr13 34729472 34729608 -85015290 + MIR SINE MIR 104 232 -30 606 293 114 74 chr13 34730520 34731342 -85013556 + L2 LINE L2 2467 3312 -1 199 256 73 49 chr13 34732444 34732526 -85012372 - MIR SINE MIR -107 101 18 2208 118 7 7 chr13 34734002 34734307 -85010591 + AluSx SINE Alu 1 305 -7 1078 246 9 9 chr13 34734434 34734654 -85010244 + MER58A DNA MER1_type 1 220 -4 183 80 0 0 chr13 34735349 34735374 -85009524 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 2094 108 45 0 chr13 34735693 34735980 -85008918 - AluSx SINE Alu -12 300 1 556 279 50 6 chr13 34736342 34736521 -85008377 - MIR SINE MIR -56 206 20 543 291 10 66 chr13 34736582 34736778 -85008120 + MIR3 SINE MIR 20 204 -4 1332 267 86 80 chr13 34737212 34737912 -85006986 + MER21B LTR ERV1 6 709 -154 1072 261 54 45 chr13 34737912 34738357 -85006541 + L2 LINE L2 2857 3305 -8 2120 85 0 0 chr13 34738560 34738819 -85006079 - AluY SINE Alu -20 291 33 186 43 0 0 chr13 34739477 34739500 -85005398 + (T)n Simple_repeat Simple_repeat 1 23 0 1123 162 6 0 chr13 34740073 34740252 -85004646 + AluSg/x SINE Alu 133 312 0 2093 192 8 0 chr13 34740275 34740640 -85004258 + MER93b LTR ERV1 5 372 -1 241 186 0 51 chr13 34740826 34740885 -85004013 - Charlie3 DNA MER1_type -637 2073 2018 754 279 131 46 chr13 34740894 34741352 -85003546 + L3 LINE CR1 740 1236 -341 181 323 0 15 chr13 34741417 34741482 -85003416 - L2 LINE L2 -8 3264 3201 1910 183 79 100 chr13 34741598 34742053 -85002845 + MLT2B1 LTR ERVL 1 464 -56 2101 128 19 53 chr13 34742053 34742429 -85002469 - THE1B LTR MaLR 0 364 2 10937 104 33 56 chr13 34742430 34744046 -85000852 - THE1B-int LTR MaLR 0 1580 1 2259 109 27 56 chr13 34744046 34744421 -85000477 - THE1B LTR MaLR 0 364 1 1910 183 79 100 chr13 34744421 34744493 -85000405 + MLT2B1 LTR ERVL 462 520 0 245 346 34 63 chr13 34744719 34744924 -84999974 - L2 LINE L2 -223 3049 2851 417 374 15 8 chr13 34745162 34745424 -84999474 - L2 LINE L2 -810 2504 2241 374 236 94 16 chr13 34745472 34745599 -84999299 + MIR SINE MIR 37 173 -89 231 346 83 20 chr13 34745662 34745916 -84998982 - L2 LINE L2 -1106 2208 1939 2451 77 0 13 chr13 34746671 34746981 -84997917 - AluY SINE Alu -5 306 1 21 0 0 0 chr13 34747541 34747562 -84997336 + AT_rich Low_complexity Low_complexity 1 21 0 326 330 70 48 chr13 34747967 34748056 -84996842 + L3 LINE CR1 1301 1387 -190 2311 96 0 0 chr13 34748056 34748348 -84996550 + AluY SINE Alu 1 292 -19 326 330 70 48 chr13 34748348 34748528 -84996370 + L3 LINE CR1 1387 1576 -1 1855 136 49 0 chr13 34749117 34749404 -84995494 - AluJb SINE Alu -11 301 1 1618 100 0 0 chr13 34749733 34749943 -84994955 + AluSg/x SINE Alu 85 294 -16 345 96 0 0 chr13 34749966 34750018 -84994880 + Alu SINE Alu 247 298 -2 215 226 0 48 chr13 34750071 34750133 -84994765 + L2 LINE L2 3254 3312 -1 526 111 0 12 chr13 34750871 34750952 -84993946 + MADE1 DNA Mariner 1 80 0 282 237 0 0 chr13 34751259 34751335 -84993563 + (CA)n Simple_repeat Simple_repeat 2 77 0 2295 79 0 54 chr13 34751876 34752191 -84992707 - AluY SINE Alu -13 298 1 487 256 63 59 chr13 34752294 34752532 -84992366 - L3 LINE CR1 -956 621 383 2030 184 63 20 chr13 34752704 34753150 -84991748 + MLT1C LTR MaLR 3 467 0 2259 87 7 0 chr13 34754594 34754908 -84989990 - AluSp SINE Alu 0 313 1 1663 180 36 4 chr13 34755730 34756008 -84988890 - AluJb SINE Alu -21 291 5 27 0 0 0 chr13 34757663 34757690 -84987208 + AT_rich Low_complexity Low_complexity 1 27 0 332 258 21 0 chr13 34758941 34759034 -84985864 + MER103 DNA DNA 72 166 0 712 65 9 9 chr13 34760941 34761049 -84983849 + (TGGA)n Simple_repeat Simple_repeat 1 108 0 263 286 14 0 chr13 34761276 34761346 -84983552 - L2 LINE L2 -3 3310 3240 266 311 10 10 chr13 34762618 34762721 -84982177 + MIR SINE MIR 35 137 -71 191 100 0 0 chr13 34762908 34762938 -84981960 - MIR SINE MIR -108 154 125 28 29 0 0 chr13 34764442 34764477 -84980421 + AT_rich Low_complexity Low_complexity 1 35 0 1604 179 78 29 chr13 34764953 34765299 -84979599 - MLT1A1 LTR MaLR -2 363 1 568 301 28 0 chr13 34765341 34765517 -84979381 + MIR SINE MIR 60 240 -22 364 145 16 0 chr13 34766883 34766945 -84977953 - Charlie8 DNA MER1_type -14 2403 2341 458 293 142 29 chr13 34767000 34767246 -84977652 - Charlie8 DNA MER1_type -2141 276 3 375 127 0 0 chr13 34767436 34767499 -84977399 + (TG)n Simple_repeat Simple_repeat 1 63 0 1425 159 126 4 chr13 34768067 34768338 -84976560 - AluJo SINE Alu -8 304 1 260 343 122 6 chr13 34768638 34768819 -84976079 + MIR SINE MIR 1 202 -60 2625 182 22 0 chr13 34769728 34770185 -84974713 + MLT1C LTR MaLR 1 467 0 276 322 114 20 chr13 34770662 34770811 -84974087 + MIR3 SINE MIR 37 199 -9 1876 156 64 22 chr13 34771180 34771540 -84973358 + THE1C LTR MaLR 1 375 0 1724 168 48 30 chr13 34772278 34772611 -84972287 + MER58B DNA MER1_type 3 341 0 1967 186 15 33 chr13 34773577 34774057 -84970841 + L1MB3 LINE L1 5353 5832 -339 10903 63 18 10 chr13 34774057 34775432 -84969466 + SVA Other Other 1 1386 0 1152 126 15 45 chr13 34775441 34775640 -84969258 + AluSg/x SINE Alu 120 312 0 1847 157 7 0 chr13 34775645 34775945 -84968953 + L1MB3 LINE L1 5823 6124 -59 1578 193 121 24 chr13 34776773 34777193 -84967705 + MLT1C LTR MaLR 1 461 -6 1885 156 82 2 chr13 34777325 34777662 -84967236 + MLT1A1 LTR MaLR 1 396 0 1335 208 12 103 chr13 34777988 34778387 -84966511 + MLT1A1 LTR MaLR 3 365 0 2312 114 0 0 chr13 34779062 34779361 -84965537 + AluSq SINE Alu 1 299 -14 465 173 0 0 chr13 34779867 34779942 -84964956 - FRAM SINE Alu -59 117 43 182 209 23 0 chr13 34781155 34781198 -84963700 + L2 LINE L2 3204 3247 -25 204 40 0 0 chr13 34781201 34781226 -84963672 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1988 203 0 18 chr13 34781759 34782009 -84962889 + MLT1B LTR MaLR 8 250 -140 2079 134 156 5 chr13 34782009 34782381 -84962517 + MSTA LTR MaLR 1 428 0 1988 203 0 18 chr13 34782381 34782520 -84962378 + MLT1B LTR MaLR 250 390 0 235 311 59 0 chr13 34782520 34782655 -84962243 - MIR SINE MIR -36 226 84 2760 16 0 13 chr13 34784107 34784415 -84960483 - AluYa5 SINE Alu -7 304 1 2340 101 10 0 chr13 34785780 34786087 -84958811 - AluSx SINE Alu -2 310 1 379 227 136 39 chr13 34786505 34786659 -84958239 - MIR SINE MIR 0 262 94 915 202 61 45 chr13 34787571 34787755 -84957143 - L1MB3 LINE L1 -1 6182 5992 1782 152 21 0 chr13 34787755 34788044 -84956854 + AluJb SINE Alu 1 295 -17 915 202 61 45 chr13 34788044 34788106 -84956792 - L1MB3 LINE L1 -191 5992 5932 1103 132 5 21 chr13 34788174 34788388 -84956510 - MER1B DNA MER1_type -4 335 56 831 165 0 0 chr13 34788412 34788539 -84956359 - FLAM_C SINE Alu -6 127 1 691 218 21 21 chr13 34788544 34788732 -84956166 + L1M4 LINE L1 2245 2432 -3714 3161 122 8 23 chr13 34788767 34788905 -84955993 - L1MB3 LINE L1 -241 5942 5803 1751 141 45 6 chr13 34788905 34789217 -84955681 - L1MC1 LINE L1 -7 6326 6003 3161 122 8 23 chr13 34789217 34789593 -84955305 - L1MB3 LINE L1 -380 5803 5436 960 172 11 17 chr13 34789815 34789989 -84954909 + FRAM SINE Alu 1 173 -3 294 143 0 0 chr13 34789991 34790040 -84954858 + (GA)n Simple_repeat Simple_repeat 1 49 0 2020 145 7 7 chr13 34790318 34790621 -84954277 - AluSx SINE Alu -9 303 1 180 0 0 0 chr13 34790678 34790698 -84954200 + (TTA)n Simple_repeat Simple_repeat 2 21 0 809 185 0 0 chr13 34790701 34790836 -84954062 - FRAM SINE Alu -30 146 12 1715 88 8 0 chr13 34791077 34791315 -84953583 + L1MA1 LINE L1 6059 6298 -4 243 0 0 0 chr13 34792455 34792482 -84952416 + (CA)n Simple_repeat Simple_repeat 1 27 0 2432 98 3 0 chr13 34793579 34793886 -84951012 + AluSg SINE Alu 1 308 -2 1507 110 5 14 chr13 34794697 34794906 -84949992 + AluSx SINE Alu 1 207 -105 761 107 16 8 chr13 34795063 34795184 -84949714 + L1MA2 LINE L1 6183 6304 0 2294 96 0 0 chr13 34796820 34797111 -84947787 - AluSq SINE Alu -4 309 19 1264 177 12 49 chr13 34797165 34797408 -84947490 - AluJo SINE Alu -77 235 2 24 0 0 0 chr13 34797457 34797481 -84947417 + AT_rich Low_complexity Low_complexity 1 24 0 284 308 10 0 chr13 34798569 34798673 -84946225 + LTR48B LTR ERV1 1 105 -539 1122 196 47 73 chr13 34798676 34798937 -84945961 + MER39 LTR ERV1 330 440 -125 1734 173 10 10 chr13 34798937 34799226 -84945672 + AluJb SINE Alu 1 289 -23 1122 196 47 73 chr13 34799226 34799345 -84945553 + MER39 LTR ERV1 440 561 -4 21 0 0 0 chr13 34799546 34799567 -84945331 + AT_rich Low_complexity Low_complexity 1 21 0 315 274 65 24 chr13 34800227 34800351 -84944547 - MER94 DNA DNA -5 129 1 335 222 35 111 chr13 34801081 34801225 -84943673 + MIR SINE MIR 59 191 -71 1913 126 47 20 chr13 34803485 34803786 -84941112 - AluSq SINE Alu -4 309 1 1699 190 57 35 chr13 34803917 34804322 -84940576 + MLT2D LTR ERVL 1 414 0 22 35 0 0 chr13 34805829 34805858 -84939040 + AT_rich Low_complexity Low_complexity 1 29 0 225 214 0 60 chr13 34806255 34806339 -84938559 + L1MC5 LINE L1 7671 7749 -212 2194 124 0 0 chr13 34806530 34806828 -84938070 + AluSx SINE Alu 1 298 -14 34 55 0 0 chr13 34808065 34808120 -84936778 + AT_rich Low_complexity Low_complexity 1 55 0 213 289 0 0 chr13 34808365 34808417 -84936481 + L2 LINE L2 3262 3313 0 2225 118 3 0 chr13 34808508 34808805 -84936093 - AluSp SINE Alu -15 298 1 447 219 110 49 chr13 34808938 34809101 -84935797 + MIR3 SINE MIR 36 208 0 183 129 0 0 chr13 34810854 34810885 -84934013 + (TG)n Simple_repeat Simple_repeat 1 31 0 304 256 128 42 chr13 34810925 34811285 -84933613 + L1ME4a LINE L1 5508 5898 -223 589 197 51 8 chr13 34811887 34812004 -84932894 + L2 LINE L2 3191 3312 -1 1847 122 65 7 chr13 34812127 34812435 -84932463 - AluJb SINE Alu 0 312 1 3520 69 0 0 chr13 34813284 34813746 -84931152 + L1PA8 LINE L1 5704 6165 -7 221 300 116 28 chr13 34814281 34814422 -84930476 + MIR SINE MIR 5 158 -65 24 0 0 0 chr13 34815692 34815716 -84929182 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr13 34815758 34815787 -84929111 + (TTA)n Simple_repeat Simple_repeat 2 30 0 40662 32 24 2 chr13 34815787 34821795 -84923103 - L1PA2 LINE L1 -7 6148 1 432 55 0 0 chr13 34822536 34822591 -84922307 + (TC)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chr13 34823031 34823053 -84921845 + AT_rich Low_complexity Low_complexity 1 22 0 213 250 18 0 chr13 34823075 34823131 -84921767 + MIR3 SINE MIR 150 206 -2 1135 158 99 11 chr13 34824239 34824523 -84920375 - MER33 DNA MER1_type -10 314 6 25 0 0 0 chr13 34826245 34826270 -84918628 + AT_rich Low_complexity Low_complexity 1 25 0 2013 183 58 22 chr13 34827406 34827821 -84917077 + MSTB1 LTR MaLR 1 430 -2 751 199 54 11 chr13 34827918 34828104 -84916794 + L1MB7 LINE L1 46 239 -6303 461 170 0 40 chr13 34828096 34828196 -84916702 + L1MB7 LINE L1 1419 1514 -5028 * 4896 252 38 33 chr13 34828219 34830653 -84914245 + L1MB7 LINE L1 1936 4334 -2310 392 48 0 65 chr13 34830654 34830716 -84914182 - MLT2C2 LTR ERVL 0 464 407 658 265 76 69 chr13 34830751 34831144 -84913754 - MLT2B1 LTR ERVL -39 481 86 4162 202 16 40 chr13 34831153 34831448 -84913450 + L1MB7 LINE L1 4315 4616 -2028 2270 88 26 0 chr13 34831448 34831753 -84913145 - AluSq SINE Alu 0 313 1 4162 202 16 40 chr13 34831753 34832514 -84912384 + L1MB7 LINE L1 4616 5342 -1302 2436 109 0 0 chr13 34832514 34832827 -84912071 - AluSp SINE Alu 0 313 1 4162 202 16 40 chr13 34832827 34832934 -84911964 + L1MB7 LINE L1 5342 5450 -1194 1231 202 3 31 chr13 34832933 34833250 -84911648 + L1MB7 LINE L1 6138 6445 -237 * 24 0 0 0 chr13 34833370 34833394 -84911504 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr13 34834523 34834573 -84910325 + AT_rich Low_complexity Low_complexity 1 50 0 2007 135 49 18 chr13 34834677 34835004 -84909894 - MER1B DNA MER1_type 0 337 1 1720 156 14 3 chr13 34835279 34835589 -84909309 - AluJb SINE Alu 0 312 1 292 298 158 93 chr13 34835996 34836139 -84908759 + L2 LINE L2 2823 2955 -317 3937 127 46 0 chr13 34836139 34836746 -84908152 + MER41B LTR ERV1 1 635 0 292 298 158 93 chr13 34836746 34837021 -84907877 + L2 LINE L2 2955 3268 -4 410 256 113 34 chr13 34837402 34837593 -84907305 - MIR SINE MIR -18 244 45 2213 105 0 33 chr13 34837860 34838166 -84906732 - AluSq SINE Alu -17 296 1 556 246 116 5 chr13 34838672 34838871 -84906027 - MARNA DNA Mariner -180 406 186 239 286 14 0 chr13 34838988 34839058 -84905840 + (TA)n Simple_repeat Simple_repeat 1 71 0 2406 89 0 6 chr13 34839689 34840003 -84904895 - AluSx SINE Alu 0 312 1 265 339 158 9 chr13 34840984 34841205 -84903693 + MIR SINE MIR 2 255 -7 2129 96 4 0 chr13 34841206 34841477 -84903421 + AluSp SINE Alu 4 275 -38 21 71 0 0 chr13 34841848 34841890 -84903008 + AT_rich Low_complexity Low_complexity 1 42 0 403 211 100 0 chr13 34842244 34842334 -84902564 + MER63 DNA MER1_type 27 751 -85 270 281 12 0 chr13 34842732 34842814 -84902084 + CT-rich Low_complexity Low_complexity 2 84 0 967 147 6 6 chr13 34843105 34843262 -84901636 - FRAM SINE Alu -20 156 1 2348 155 41 56 chr13 34843529 34844014 -84900884 + MER66A LTR ERV1 1 478 0 3462 134 11 62 chr13 34844390 34845037 -84899861 + L1MA4 LINE L1 5593 6204 -96 2240 103 0 0 chr13 34845037 34845343 -84899555 - AluSx SINE Alu 0 306 1 3462 134 11 62 chr13 34845343 34845414 -84899484 + L1MA4 LINE L1 6204 6277 -23 273 315 18 36 chr13 34845640 34845751 -84899147 - MIR3 SINE MIR -3 205 97 442 282 53 73 chr13 34846274 34846480 -84898418 - MIR SINE MIR -48 214 13 218 171 0 0 chr13 34847186 34847221 -84897677 + (CA)n Simple_repeat Simple_repeat 1 35 0 731 130 9 0 chr13 34847490 34847598 -84897300 - FRAM SINE Alu -14 162 54 448 174 0 0 chr13 34847600 34847686 -84897212 + L1 LINE L1 4999 5084 -1062 * 6749 156 47 31 chr13 34847670 34849109 -84895789 - L1MC3 LINE L1 -129 7656 6194 1005 276 123 45 chr13 34850748 34851478 -84893420 + HAL1 LINE L1 962 1803 -704 1985 181 73 5 chr13 34851478 34851877 -84893021 + MSTB LTR MaLR 1 426 0 1005 276 123 45 chr13 34851877 34852215 -84892683 + HAL1 LINE L1 1803 2113 -394 356 264 77 29 chr13 34852323 34852531 -84892367 + HAL1 LINE L1 2290 2507 0 321 267 57 19 chr13 34852640 34852745 -84892153 - L1MC4 LINE L1 -10 8032 7924 357 196 10 82 chr13 34852793 34852890 -84892008 + L1MC4 LINE L1 6614 6703 -1339 198 0 0 0 chr13 34852890 34852912 -84891986 + (TA)n Simple_repeat Simple_repeat 2 23 0 1995 147 0 3 chr13 34853104 34853403 -84891495 + AluSx SINE Alu 1 298 -14 181 222 79 16 chr13 34853405 34853468 -84891430 + L2 LINE L2 3205 3271 -1 4702 117 19 21 chr13 34854496 34855342 -84889556 + L1MA8 LINE L1 5273 6116 -175 996 110 7 19 chr13 34855344 34855499 -84889399 + FRAM SINE Alu 1 153 -23 1004 140 21 16 chr13 34855507 34855700 -84889198 + L1MA8 LINE L1 6098 6291 0 274 304 98 20 chr13 34856186 34856288 -84888610 + MIR3 SINE MIR 6 115 -93 464 252 28 75 chr13 34857423 34857637 -84887261 + MER63A DNA MER1_type 1 204 -6 220 375 111 14 chr13 34860031 34860175 -84884723 - L2 LINE L2 0 3272 3115 297 327 77 39 chr13 34860402 34860610 -84884288 - L3 LINE CR1 -51 1526 1311 339 320 105 0 chr13 34860715 34860868 -84884030 - L2 LINE L2 -8 3264 3096 529 267 38 129 chr13 34860987 34861358 -84883540 - L2 LINE L2 -10 3303 2967 1489 270 105 0 chr13 34861532 34861991 -84882907 + LTR40a LTR ERVL 3 509 -10 533 220 113 28 chr13 34862077 34862254 -84882644 - L2 LINE L2 -128 3185 2994 24 67 0 0 chr13 34863381 34863426 -84881472 + AT_rich Low_complexity Low_complexity 1 45 0 442 0 0 0 chr13 34863431 34863484 -84881414 - L1PA2 LINE L1 -679 5476 5424 6097 6 0 3 chr13 34863484 34864166 -84880732 + L1PA2 LINE L1 5473 6155 0 213 246 15 15 chr13 34864221 34864286 -84880612 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1174 72 13 0 chr13 34864290 34864442 -84880456 + AluY SINE Alu 142 295 -16 225 154 0 0 chr13 34864442 34864481 -84880417 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr13 34864629 34864650 -84880248 + AT_rich Low_complexity Low_complexity 1 21 0 243 61 0 0 chr13 34864677 34864710 -84880188 + (ATG)n Simple_repeat Simple_repeat 3 35 0 2358 99 3 0 chr13 34867403 34867705 -84877193 - AluSq SINE Alu -10 303 1 226 278 56 0 chr13 34869872 34869944 -84874954 + L2 LINE L2 3187 3262 -51 186 285 271 0 chr13 34870038 34870182 -84874716 + MIR SINE MIR 51 233 -29 183 242 0 0 chr13 34870445 34870478 -84874420 - L3 LINE CR1 -871 706 674 290 314 0 0 chr13 34871340 34871426 -84873472 + L2 LINE L2 3228 3313 0 2273 98 0 7 chr13 34871917 34872214 -84872684 + AluSc SINE Alu 5 299 -10 755 222 113 5 chr13 34872689 34872883 -84872015 + MIR SINE MIR 48 262 0 245 277 78 42 chr13 34873634 34873800 -84871098 - MIR SINE MIR -44 218 47 7790 19 0 0 chr13 34874106 34875103 -84869795 + L1PA3 LINE L1 5157 6152 -3 198 0 0 0 chr13 34875106 34875128 -84869770 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 207 284 75 0 chr13 34876595 34876662 -84868236 - MIR SINE MIR -73 189 118 2332 81 0 28 chr13 34878157 34878479 -84866419 - AluSq SINE Alu 0 313 1 21 0 0 0 chr13 34878846 34878867 -84866031 + AT_rich Low_complexity Low_complexity 1 21 0 377 299 170 10 chr13 34878871 34879065 -84865833 - MIR SINE MIR -32 230 6 608 324 40 14 chr13 34879130 34879352 -84865546 - MIR SINE MIR -33 229 2 1647 279 113 10 chr13 34879565 34880175 -84864723 + L2 LINE L2 1709 2381 -933 217 265 44 15 chr13 34880163 34880231 -84864667 + L2 LINE L2 3244 3313 0 * 992 208 50 0 chr13 34880603 34880843 -84864055 - L1MB7 LINE L1 0 6184 5933 336 311 89 0 chr13 34880854 34880989 -84863909 - MIR SINE MIR -13 249 103 2049 43 122 4 chr13 34881755 34882033 -84862865 + AluY SINE Alu 1 311 0 205 320 40 0 chr13 34883121 34883196 -84861702 + MIR SINE MIR 72 149 -113 2020 117 0 27 chr13 34883269 34883567 -84861331 + AluSx SINE Alu 1 290 -22 375 339 0 0 chr13 34884280 34884389 -84860509 - L3 LINE CR1 -233 1344 1236 191 114 29 0 chr13 34884535 34884570 -84860328 + GA-rich Low_complexity Low_complexity 2 37 0 214 246 312 14 chr13 34884603 34884741 -84860157 - MIR SINE MIR -12 250 72 199 315 14 82 chr13 34884820 34884966 -84859932 - L3 LINE CR1 -358 1219 1084 251 371 73 8 chr13 34884981 34885105 -84859793 - L2 LINE L2 -20 3252 3121 1650 193 74 20 chr13 34885510 34885863 -84859035 + MLT1A2 LTR MaLR 3 374 0 314 317 48 36 chr13 34885863 34886030 -84858868 - L3 LINE CR1 -889 688 520 2143 115 0 7 chr13 34886883 34887178 -84857720 + AluSq SINE Alu 2 294 -19 779 264 62 7 chr13 34887402 34887690 -84857208 - MER46C DNA MER2_type -13 325 22 1048 155 26 58 chr13 34888352 34888578 -84856320 + MER20 DNA MER1_type 1 219 0 23 54 0 0 chr13 34888702 34888739 -84856159 + AT_rich Low_complexity Low_complexity 1 37 0 445 123 0 0 chr13 34889581 34889646 -84855252 + Tigger2 DNA MER2_type 3 67 -2651 * 2448 121 70 16 chr13 34889632 34890061 -84854837 + Tigger2 DNA MER2_type 2267 2718 0 233 214 0 36 chr13 34891252 34891308 -84853590 - L2 LINE L2 -9 3304 3251 26 0 0 0 chr13 34892629 34892655 -84852243 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr13 34893576 34893599 -84851299 + AT_rich Low_complexity Low_complexity 1 23 0 6213 52 11 7 chr13 34893987 34894817 -84850081 - L1PA8 LINE L1 0 6172 5340 183 80 0 0 chr13 34898381 34898406 -84846492 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1834 88 14 0 chr13 34898504 34898787 -84846111 - L1PA8 LINE L1 -772 5374 5088 1011 37 7 22 chr13 34898787 34898915 -84845983 + L1PA8 LINE L1 6040 6172 0 25 31 0 0 chr13 34899561 34899593 -84845305 + AT_rich Low_complexity Low_complexity 1 32 0 748 234 22 22 chr13 34899752 34899936 -84844962 + MIR SINE MIR 78 261 -1 21 36 0 0 chr13 34899938 34899966 -84844932 + AT_rich Low_complexity Low_complexity 1 28 0 2796 16 0 0 chr13 34900013 34900320 -84844578 - AluYa5 SINE Alu -4 307 1 224 282 0 42 chr13 34901051 34901122 -84843776 - L2 LINE L2 0 3272 3205 27 0 0 0 chr13 34901296 34901323 -84843575 + AT_rich Low_complexity Low_complexity 1 27 0 582 184 0 9 chr13 34901468 34901577 -84843321 - FLAM_A SINE Alu -23 119 12 1952 149 3 3 chr13 34902704 34903040 -84841858 - AluSx SINE Alu 0 336 1 22 35 0 0 chr13 34903503 34903532 -84841366 + AT_rich Low_complexity Low_complexity 1 29 0 611 261 46 0 chr13 34904727 34904922 -84839976 + L1ME1 LINE L1 5958 6161 -5 21 0 0 0 chr13 34905054 34905075 -84839823 + AT_rich Low_complexity Low_complexity 1 21 0 422 272 144 15 chr13 34905458 34905653 -84839245 + MIR SINE MIR 43 262 0 2389 71 7 0 chr13 34906506 34906801 -84838097 - AluSq SINE Alu -15 298 2 1254 185 21 110 chr13 34907595 34907930 -84836968 + AluYb8 SINE Alu 1 305 -13 284 220 33 0 chr13 34909160 34909251 -84835647 - MER5A DNA MER1_type -83 106 13 2124 117 3 22 chr13 34909261 34909577 -84835321 - AluSx SINE Alu -2 310 1 25 31 0 0 chr13 34909779 34909811 -84835087 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr13 34910601 34910624 -84834274 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2218 115 0 13 chr13 34910653 34910965 -84833933 + AluSx SINE Alu 1 308 -4 260 356 30 69 chr13 34911852 34912085 -84832813 - L2 LINE L2 -53 3219 2996 633 294 51 47 chr13 34912495 34912730 -84832168 - MIR SINE MIR -7 255 20 347 225 25 92 chr13 34912910 34913030 -84831868 - MIR SINE MIR -33 229 118 669 35 0 0 chr13 34914870 34914955 -84829943 - AluY SINE Alu -4 307 223 647 216 199 6 chr13 34916932 34917113 -84827785 + MIR SINE MIR 7 222 -40 317 318 69 29 chr13 34917136 34917309 -84827589 - MIR SINE MIR -45 217 38 2509 52 0 13 chr13 34918362 34918668 -84826230 - AluY SINE Alu -9 302 1 21 36 0 0 chr13 34919763 34919791 -84825107 + AT_rich Low_complexity Low_complexity 1 28 0 278 319 120 0 chr13 34921154 34921281 -84823617 + MIR SINE MIR 43 192 -67 948 181 0 50 chr13 34922554 34922736 -84822162 + AluJb SINE Alu 137 309 -3 207 69 0 0 chr13 34922863 34922892 -84822006 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2215 127 0 9 chr13 34923469 34923784 -84821114 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 34925544 34925565 -84819333 + AT_rich Low_complexity Low_complexity 1 21 0 342 336 81 41 chr13 34925700 34926232 -84818666 - L2 LINE L2 -592 2722 2170 1730 171 79 6 chr13 34926260 34926600 -84818298 - MLT1A1 LTR MaLR 0 365 1 2313 224 107 6 chr13 34926864 34927544 -84817354 + L1MC4a LINE L1 7056 7804 -4 1927 106 14 0 chr13 34927864 34928146 -84816752 + MER7A DNA MER2_type 63 346 0 1256 300 41 18 chr13 34928172 34928829 -84816069 + L1MC4a LINE L1 5255 5926 -1882 798 171 0 14 chr13 34928844 34928990 -84815908 + Tigger7 DNA MER2_type 27 170 -265 * 1359 118 32 112 chr13 34928989 34929302 -84815596 + Tigger7 DNA MER2_type 2300 2587 0 767 154 0 0 chr13 34929358 34929475 -84815423 + FLAM_C SINE Alu 1 117 -16 24 53 0 0 chr13 34929562 34929600 -84815298 + AT_rich Low_complexity Low_complexity 1 38 0 236 275 0 14 chr13 34930323 34930392 -84814506 + (CATA)n Simple_repeat Simple_repeat 2 69 0 867 268 60 0 chr13 34931096 34931331 -84813567 + MIR SINE MIR 14 262 0 447 300 50 39 chr13 34932731 34932911 -84811987 + MIR3 SINE MIR 19 200 -8 743 164 14 100 chr13 34933752 34934084 -84810814 - AluJo SINE Alu -2 310 28 299 331 71 32 chr13 34934364 34934518 -84810380 - MIR SINE MIR -83 179 20 254 213 16 16 chr13 34934823 34934884 -84810014 + GA-rich Low_complexity Low_complexity 3 63 0 555 317 11 28 chr13 34934972 34935152 -84809746 + MIR SINE MIR 65 241 -21 358 296 129 60 chr13 34935718 34935951 -84808947 - MIR SINE MIR -6 256 8 184 300 0 17 chr13 34935996 34936056 -84808842 + MIR SINE MIR 64 122 -86 456 250 191 69 chr13 34938445 34938849 -84806049 - L1M2 LINE L1 -5831 1018 566 207 0 0 0 chr13 34938908 34938931 -84805967 + (CGG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr13 34938978 34938998 -84805900 + (TCC)n Simple_repeat Simple_repeat 1 20 0 650 278 47 16 chr13 34940982 34941173 -84803725 - MIR SINE MIR -12 250 54 268 263 141 0 chr13 34941921 34942020 -84802878 - L3 LINE CR1 -2 1575 1463 857 332 163 27 chr13 34942306 34943075 -84801823 - L3 LINE CR1 -126 1451 579 560 276 152 50 chr13 34943263 34943777 -84801121 - L2 LINE L2 0 3272 2708 1875 177 0 3 chr13 34944029 34944328 -84800570 - AluJb SINE Alu -14 298 1 27 81 0 0 chr13 34944377 34944439 -84800459 + AT_rich Low_complexity Low_complexity 1 62 0 28 0 0 0 chr13 34944454 34944482 -84800416 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 34944708 34944729 -84800169 + AT_rich Low_complexity Low_complexity 1 21 0 2736 220 85 7 chr13 34944947 34946039 -84798859 + L1ME1 LINE L1 4980 6162 -4 337 294 141 54 chr13 34946137 34946783 -84798115 + L1MC4a LINE L1 5263 5964 -1844 237 340 19 19 chr13 34947351 34947457 -84797441 + L1ME3A LINE L1 522 627 -5578 459 244 52 92 chr13 34947678 34948202 -84796696 + L1ME3A LINE L1 818 1320 -4885 26 30 0 0 chr13 34948214 34948247 -84796651 + AT_rich Low_complexity Low_complexity 1 33 0 2874 229 8 2 chr13 34948332 34948962 -84795936 - MER82 DNA MER2_type -9 644 11 264 336 7 7 chr13 34948979 34949125 -84795773 + L1ME3A LINE L1 1384 1529 -4688 227 304 36 24 chr13 34949245 34949498 -84795400 + L1ME3A LINE L1 2144 2399 -3997 380 272 22 37 chr13 34949557 34949693 -84795205 + L1ME3A LINE L1 2466 2599 -3616 * 381 272 52 42 chr13 34949686 34949877 -84795021 + L1ME3A LINE L1 2819 3011 -3204 2301 95 3 7 chr13 34949916 34950222 -84794676 + AluY SINE Alu 1 305 -6 235 344 11 0 chr13 34950274 34950367 -84794531 + MLT1E1 LTR MaLR 3 96 -558 * 933 212 151 84 chr13 34950355 34950760 -84794138 + MLT1E1 LTR MaLR 221 652 -2 1162 295 115 15 chr13 34950777 34951648 -84793250 + L1ME3A LINE L1 3227 4184 -2031 1197 286 79 32 chr13 34951655 34952942 -84791956 + L1ME3A LINE L1 4215 5560 -671 799 326 7 15 chr13 34952981 34953392 -84791506 + L1ME3A LINE L1 5539 5946 -293 238 385 55 0 chr13 34953518 34953609 -84791289 + L2 LINE L2 3128 3223 -49 448 346 16 5 chr13 34953622 34953807 -84791091 - LTR16C LTR ERVL -5 486 300 191 317 17 17 chr13 34954138 34954198 -84790700 - MIR SINE MIR -183 79 20 326 291 76 51 chr13 34954382 34954540 -84790358 - MIR SINE MIR -34 228 67 256 234 0 0 chr13 34956036 34956083 -84788815 + MIR SINE MIR 114 160 -102 338 289 0 0 chr13 34956109 34956185 -84788713 + L2 LINE L2 3197 3272 0 359 271 48 32 chr13 34956694 34956972 -84787926 + L1ME3A LINE L1 4757 5037 -1109 6134 131 7 6 chr13 34957135 34958608 -84786290 + L1PB1 LINE L1 4677 6149 -2 328 237 80 91 chr13 34958712 34958999 -84785899 + L1ME3A LINE L1 5309 5592 -2216 1115 231 172 9 chr13 34959008 34959345 -84785553 + MLT1H LTR MaLR 12 403 -146 2473 103 31 14 chr13 34959525 34959883 -84785015 + THE1B LTR MaLR 1 364 0 595 316 46 14 chr13 34960339 34960557 -84784341 - MIR SINE MIR -26 236 12 342 0 0 0 chr13 34960574 34960612 -84784286 + (CA)n Simple_repeat Simple_repeat 2 39 0 280 315 26 32 chr13 34960649 34960685 -84784213 - MIR SINE MIR -56 152 117 1618 186 17 10 chr13 34960685 34960981 -84783917 - AluJo SINE Alu -13 299 2 280 315 26 32 chr13 34960981 34961104 -84783794 - MIR SINE MIR -91 117 46 1520 157 7 47 chr13 34961843 34962117 -84782781 + AluJb SINE Alu 39 301 -11 1620 264 92 25 chr13 34963495 34964115 -84780783 - L2 LINE L2 -311 3002 2341 270 81 0 0 chr13 34964879 34964916 -84779982 + (A)n Simple_repeat Simple_repeat 1 37 0 533 270 56 33 chr13 34965377 34965617 -84779281 - MIR SINE MIR 0 262 5 515 206 142 0 chr13 34965734 34965875 -84779023 - L2 LINE L2 -1398 1916 1756 578 243 50 55 chr13 34966864 34967045 -84777853 + L2 LINE L2 2608 2787 -527 1054 112 13 0 chr13 34967142 34967385 -84777513 + AluSp/q SINE Alu 160 404 0 564 240 49 44 chr13 34967402 34967606 -84777292 + L1ME3A LINE L1 5935 6139 -31 873 290 9 31 chr13 34967635 34967956 -84776942 - L2 LINE L2 -1479 1835 1522 310 265 232 6 chr13 34967956 34968137 -84776761 - L2 LINE L2 -3005 309 88 315 290 30 0 chr13 34968508 34968677 -84776221 - L1M4 LINE L1 -749 5397 5224 2189 94 0 7 chr13 34968724 34969031 -84775867 - AluY SINE Alu 0 305 1 180 0 0 0 chr13 34969147 34969167 -84775731 + (T)n Simple_repeat Simple_repeat 1 20 0 310 281 157 13 chr13 34969437 34969590 -84775308 - L1MC/D LINE L1 -2191 5617 5443 458 274 101 62 chr13 34970117 34970474 -84774424 + L2 LINE L2 827 1197 -2117 385 295 80 40 chr13 34970648 34970868 -84774030 - MIR SINE MIR -27 235 1 24 0 0 0 chr13 34973003 34973027 -84771871 + AT_rich Low_complexity Low_complexity 1 24 0 356 361 41 24 chr13 34973707 34973876 -84771022 - MER5A DNA MER1_type 0 189 18 331 272 0 33 chr13 34973995 34974087 -84770811 + MER5A DNA MER1_type 63 151 -38 388 336 62 55 chr13 34974599 34974873 -84770025 + L2 LINE L2 2225 2500 -814 23 54 0 0 chr13 34976733 34976770 -84768128 + AT_rich Low_complexity Low_complexity 1 37 0 270 299 22 60 chr13 34977006 34977140 -84767758 + MIR SINE MIR 134 262 0 430 312 57 92 chr13 34977255 34977604 -84767294 + L2 LINE L2 2931 3267 -5 234 322 51 42 chr13 34978896 34979014 -84765884 + MIR3 SINE MIR 15 133 -75 205 161 0 0 chr13 34979898 34979929 -84764969 + polypyrimidine Low_complexity Low_complexity 5 35 0 266 344 86 0 chr13 34980130 34980223 -84764675 + L2 LINE L2 3110 3210 -62 744 232 209 27 chr13 34980623 34980886 -84764012 - L2 LINE L2 -4 3309 2999 295 156 65 0 chr13 34983163 34983233 -84761665 + MIR SINE MIR 50 124 -84 256 318 0 0 chr13 34983395 34983480 -84761418 + L1ME LINE L1 5573 5657 -464 340 186 167 0 chr13 34983728 34983830 -84761068 + L1ME4a LINE L1 5965 6083 -38 304 257 42 108 chr13 34983892 34983989 -84760909 - L1MC4 LINE L1 -8 8034 7957 1456 150 144 0 chr13 34983989 34984302 -84760596 - MER46B DNA MER2_type 0 236 4 304 257 42 108 chr13 34984302 34984418 -84760480 - L1MC4 LINE L1 -85 7957 7835 5191 262 64 39 chr13 34984461 34985558 -84759340 - L1ME2 LINE L1 -34 6524 5456 719 221 34 25 chr13 34985558 34985762 -84759136 - MER3 DNA MER1_type 0 209 4 5191 262 64 39 chr13 34985762 34986952 -84757946 - L1ME2 LINE L1 -1102 5456 4297 1882 163 0 14 chr13 34986952 34987247 -84757651 - AluSx SINE Alu -21 291 1 5191 262 64 39 chr13 34987247 34988001 -84756897 - L1ME2 LINE L1 -2261 4297 3563 543 106 59 0 chr13 34988001 34988086 -84756812 - L1PA10 LINE L1 -1 6167 6078 5191 262 64 39 chr13 34988086 34988870 -84756028 - L1ME2 LINE L1 -2995 3563 2597 734 276 89 39 chr13 34988885 34989449 -84755449 - L1ME2 LINE L1 -4028 2512 1926 1245 273 83 27 chr13 34989846 34990362 -84754536 + MLT1H1 LTR MaLR 7 551 -4 3698 215 140 48 chr13 34990373 34990412 -84754486 + L1MEc LINE L1 1863 1897 -4318 2531 136 41 7 chr13 34990412 34990824 -84754074 + MSTB LTR MaLR 1 426 0 3698 215 140 48 chr13 34990824 34991995 -84752903 + L1MEc LINE L1 1897 2959 -3256 2466 51 10 0 chr13 34991995 34992289 -84752609 - AluY SINE Alu -11 300 4 3698 215 140 48 chr13 34992289 34992303 -84752595 + L1MEc LINE L1 2959 2970 -3245 2947 67 0 5 chr13 34992303 34992689 -84752209 - L1PA8 LINE L1 -17 6155 5772 3698 215 140 48 chr13 34992689 34992721 -84752177 + L1MEc LINE L1 2970 2998 -3217 2259 100 0 0 chr13 34992721 34993029 -84751869 + AluSg SINE Alu 1 308 0 3698 215 140 48 chr13 34993029 34993927 -84750971 + L1MEc LINE L1 2998 4166 -2049 1809 231 83 4 chr13 34995379 34995872 -84749026 + MLT1H1 LTR MaLR 24 555 0 851 333 138 43 chr13 34995978 34997330 -84747568 + L2 LINE L2 1789 3266 -6 487 305 48 29 chr13 34999063 34999273 -84745625 - L3 LINE CR1 -98 1479 1266 183 244 67 0 chr13 34999905 34999950 -84744948 + L3b LINE CR1 1281 1328 -255 1685 135 24 3 chr13 35000159 35000455 -84744443 - L1MA9 LINE L1 0 6312 6011 23 0 0 0 chr13 35001751 35001774 -84743124 + AT_rich Low_complexity Low_complexity 1 23 0 687 292 57 20 chr13 35001797 35002146 -84742752 + L1MC5 LINE L1 7556 7917 -44 21 0 0 0 chr13 35002376 35002397 -84742501 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr13 35002472 35002514 -84742384 + AT_rich Low_complexity Low_complexity 1 42 0 485 302 48 85 chr13 35002521 35003211 -84741687 - L2 LINE L2 -17 3255 2592 303 71 0 0 chr13 35003619 35003661 -84741237 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 1894 164 3 3 chr13 35003662 35003960 -84740938 - AluJb SINE Alu -14 298 1 195 69 0 0 chr13 35006837 35006866 -84738032 + (CA)n Simple_repeat Simple_repeat 2 30 0 359 268 132 34 chr13 35007560 35007759 -84737139 + MIR SINE MIR 19 227 -35 2366 101 0 0 chr13 35008303 35008611 -84736287 + AluSg SINE Alu 1 308 -2 1622 168 25 14 chr13 35009012 35009292 -84735606 - AluJo SINE Alu -17 295 13 269 297 102 48 chr13 35011139 35011433 -84733465 - L1ME LINE L1 -557 5564 5258 2370 91 10 0 chr13 35011476 35011785 -84733113 - AluSx SINE Alu 0 312 1 1020 318 78 39 chr13 35011930 35013274 -84731624 - L1ME LINE L1 -1103 5043 3631 31 44 0 0 chr13 35013497 35013542 -84731356 + AT_rich Low_complexity Low_complexity 1 45 0 849 212 62 0 chr13 35013631 35013824 -84731074 - MER3 DNA MER1_type 0 209 5 392 281 79 60 chr13 35013837 35014318 -84730580 - L1ME LINE L1 -3139 3007 2518 25 31 0 0 chr13 35014390 35014422 -84730476 + AT_rich Low_complexity Low_complexity 1 32 0 2437 164 179 149 chr13 35014961 35015525 -84729373 - L1MD3 LINE L1 -12 7983 7256 555 219 16 0 chr13 35015525 35015648 -84729250 - MLT1F1 LTR MaLR -442 125 1 2437 164 179 149 chr13 35015648 35015974 -84728924 - L1MD3 LINE L1 -739 7256 6941 237 324 0 0 chr13 35016308 35016413 -84728485 - HAL1 LINE L1 -850 1657 1553 306 291 189 49 chr13 35016473 35016779 -84728119 - HAL1 LINE L1 -1071 1436 1088 2057 164 19 6 chr13 35016885 35017245 -84727653 - MLT1A1 LTR MaLR 0 365 1 322 238 114 0 chr13 35018016 35018121 -84726777 - L1MC4 LINE L1 -370 7672 7556 550 214 10 0 chr13 35018704 35018807 -84726091 + MER94 DNA DNA 6 109 -25 611 234 8 0 chr13 35018897 35019021 -84725877 - L2 LINE L2 -1 3312 3188 271 226 118 11 chr13 35020225 35020318 -84724580 - L1ME4a LINE L1 -46 6075 5973 316 283 91 118 chr13 35021766 35022240 -84722658 - L1M2 LINE L1 -5859 990 530 2219 89 3 3 chr13 35022625 35022918 -84721980 + AluSx SINE Alu 1 293 -19 234 0 0 0 chr13 35023851 35023877 -84721021 + (A)n Simple_repeat Simple_repeat 1 26 0 1282 184 61 11 chr13 35023888 35024149 -84720749 + AluJb SINE Alu 9 282 -30 207 0 0 0 chr13 35024153 35024176 -84720722 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1136 168 41 0 chr13 35024226 35024423 -84720475 + MER20 DNA MER1_type 14 218 -1 2139 160 20 0 chr13 35025329 35025686 -84719212 + MLT1A1 LTR MaLR 1 364 -1 1295 156 141 34 chr13 35026381 35026650 -84718248 + AluJo SINE Alu 1 298 -4 22 35 0 0 chr13 35026661 35026690 -84718208 + AT_rich Low_complexity Low_complexity 1 29 0 229 269 64 0 chr13 35026890 35026968 -84717930 + MLT1J2 LTR MaLR 342 424 -26 2692 89 3 21 chr13 35027182 35027562 -84717336 + THE1C LTR MaLR 1 373 -2 976 285 11 73 chr13 35028734 35029103 -84715795 - MLT1J2 LTR MaLR -18 432 87 279 235 29 29 chr13 35029287 35029355 -84715543 - MLT1J2 LTR MaLR -382 68 1 21 36 0 0 chr13 35029541 35029569 -84715329 + AT_rich Low_complexity Low_complexity 1 28 0 1070 297 161 17 chr13 35029594 35030608 -84714290 + L1MEc LINE L1 38 1240 -4873 427 372 7 0 chr13 35030770 35030915 -84713983 - L3 LINE CR1 -4 1573 1428 23 0 0 0 chr13 35031258 35031281 -84713617 + AT_rich Low_complexity Low_complexity 1 23 0 5734 161 16 19 chr13 35031783 35032744 -84712154 + L1PA16 LINE L1 4106 5068 -1098 1894 169 3 3 chr13 35032744 35033039 -84711859 - AluJb SINE Alu -17 295 1 5734 161 16 19 chr13 35033039 35033768 -84711130 + L1PA16 LINE L1 5068 5787 -379 1974 147 8 54 chr13 35033768 35034121 -84710777 - MER1B DNA MER1_type 0 337 1 5734 161 16 19 chr13 35034121 35034495 -84710403 + L1PA16 LINE L1 5787 6161 -5 344 236 11 22 chr13 35034690 35034779 -84710119 + MER5B DNA MER1_type 87 174 -4 22 0 0 0 chr13 35035032 35035054 -84709844 + AT_rich Low_complexity Low_complexity 1 22 0 3570 183 26 4 chr13 35035185 35035885 -84709013 - L1MB8 LINE L1 0 6178 5464 21 0 0 0 chr13 35035937 35035958 -84708940 + AT_rich Low_complexity Low_complexity 1 21 0 1678 139 66 17 chr13 35036093 35036380 -84708518 - AluJb SINE Alu -11 301 1 313 259 58 86 chr13 35036713 35036852 -84708046 - MIR3 SINE MIR -69 139 5 38 0 0 38 chr13 35037051 35037075 -84707823 + AT_rich Low_complexity Low_complexity 1 24 -27 2086 126 3 20 chr13 35037075 35037377 -84707521 - AluSx SINE Alu -15 297 1 38 0 0 38 chr13 35037377 35037405 -84707493 + AT_rich Low_complexity Low_complexity 24 51 0 365 292 62 8 chr13 35038107 35038237 -84706661 - MIR3 SINE MIR -23 185 49 723 217 0 0 chr13 35039289 35039446 -84705452 - L1M4 LINE L1 -5361 1181 1025 1805 213 21 77 chr13 35039484 35040043 -84704855 + L1MB7 LINE L1 38 565 -5977 874 139 0 29 chr13 35040044 35040181 -84704717 + AluSq/x SINE Alu 1 133 -180 882 161 76 85 chr13 35040207 35040431 -84704467 + AluSg/x SINE Alu 74 295 -15 4065 192 48 21 chr13 35040431 35041316 -84703582 + L1MB7 LINE L1 560 1467 -5075 2024 164 137 33 chr13 35041316 35041834 -84703064 + LTR49 LTR ERV1 1 572 -23 2426 245 49 17 chr13 35041849 35042736 -84702162 + L1MB7 LINE L1 1457 2505 -4320 517 238 0 21 chr13 35042736 35042879 -84702019 + L1MB7 LINE L1 4018 4157 -2487 441 234 44 0 chr13 35042875 35043012 -84701886 - L1M4 LINE L1 -3016 3130 2988 * 5246 205 36 21 chr13 35043017 35044362 -84700536 + L1MB7 LINE L1 4493 5877 -795 1116 174 158 26 chr13 35044362 35044592 -84700306 + MER2 DNA MER2_type 1 282 -62 218 32 32 0 chr13 35044592 35044623 -84700275 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1116 174 158 26 chr13 35044623 35044696 -84700202 + MER2 DNA MER2_type 282 344 0 5246 205 36 21 chr13 35044696 35045252 -84699646 + L1MB7 LINE L1 5877 6423 -249 2014 138 52 0 chr13 35045259 35045585 -84699313 + MER7A DNA MER2_type 6 346 0 1092 204 0 0 chr13 35045589 35045795 -84699103 + L1MB7 LINE L1 6420 6625 -57 687 217 0 0 chr13 35045815 35045944 -84698954 - FRAM SINE Alu -26 150 22 21 0 0 0 chr13 35045991 35046012 -84698886 + AT_rich Low_complexity Low_complexity 1 21 0 359 190 124 183 chr13 35046341 35046483 -84698415 - MER112 DNA MER1_type -1 259 139 1605 184 6 34 chr13 35046483 35046804 -84698094 + AluJo SINE Alu 1 312 0 359 190 124 183 chr13 35046804 35046935 -84697963 - MER112 DNA MER1_type -121 139 2 245 390 78 7 chr13 35047166 35047320 -84697578 - MIR SINE MIR -74 188 24 1758 163 27 18 chr13 35047338 35047669 -84697229 + MER44D DNA MER2_type 6 609 0 34 55 0 0 chr13 35047789 35047844 -84697054 + AT_rich Low_complexity Low_complexity 1 55 0 2135 251 81 30 chr13 35048799 35049339 -84695559 - L1ME3A LINE L1 -36 6134 5544 1915 152 139 16 chr13 35049339 35049720 -84695178 + MSTA LTR MaLR 1 428 0 2135 251 81 30 chr13 35049720 35049936 -84694962 - L1ME3A LINE L1 -626 5544 5340 265 366 5 31 chr13 35050415 35050609 -84694289 + ERVL LTR ERVL 5076 5264 -500 453 186 52 0 chr13 35050655 35050752 -84694146 + LTR16A LTR ERVL 296 397 -53 2033 140 0 7 chr13 35050752 35051044 -84693854 + AluSx SINE Alu 1 290 -22 2200 112 3 0 chr13 35051059 35051355 -84693543 + AluSp SINE Alu 1 297 -16 304 263 0 0 chr13 35051362 35051419 -84693479 + LTR16A LTR ERVL 386 442 -8 2334 191 16 56 chr13 35051657 35052143 -84692755 + MER68 LTR ERV1 1 467 -95 417 153 0 0 chr13 35052168 35052240 -84692658 + GA-rich Low_complexity Low_complexity 4 75 0 417 277 11 0 chr13 35052240 35052334 -84692564 + MER68 LTR ERV1 466 560 -2 275 172 17 69 chr13 35052339 35052397 -84692501 + MER77 LTR ERV1 551 605 0 1742 167 13 10 chr13 35052831 35053131 -84691767 - AluJo SINE Alu -11 301 1 5664 132 24 52 chr13 35053274 35054326 -84690572 + Tigger1 DNA MER2_type 1 1022 -1396 8315 120 28 10 chr13 35054461 35055835 -84689063 + Tigger1 DNA MER2_type 1021 2418 0 33 25 0 0 chr13 35055881 35055921 -84688977 + AT_rich Low_complexity Low_complexity 1 40 0 283 295 39 0 chr13 35057490 35057568 -84687330 - L2 LINE L2 0 3272 3192 211 320 131 42 chr13 35057725 35057984 -84686914 - L2 LINE L2 -339 2975 2694 640 298 57 66 chr13 35058079 35058428 -84686470 + L3 LINE CR1 1069 1414 -163 470 241 138 69 chr13 35059399 35059631 -84685267 - MIR SINE MIR 0 262 15 189 333 141 0 chr13 35059646 35059745 -84685153 - L2 LINE L2 -237 3035 2923 217 323 88 80 chr13 35060104 35060367 -84684531 + L2 LINE L2 2074 2338 -976 2152 123 7 0 chr13 35060868 35061169 -84683729 - AluSg SINE Alu -7 303 1 21 36 0 0 chr13 35061679 35061707 -84683191 + AT_rich Low_complexity Low_complexity 1 28 0 2246 106 0 3 chr13 35061810 35062111 -84682787 - AluSx SINE Alu -12 300 1 226 241 17 0 chr13 35062135 35062193 -84682705 - MIR SINE MIR 0 262 204 2061 112 17 3 chr13 35062918 35063212 -84681686 + AluSx SINE Alu 3 300 -12 1825 133 82 20 chr13 35063785 35064138 -84680760 - THE1C LTR MaLR 0 375 1 2197 113 3 0 chr13 35064958 35065259 -84679639 + AluSc SINE Alu 1 302 -7 360 282 68 8 chr13 35065259 35065376 -84679522 + L2 LINE L2 3137 3260 -12 225 262 202 0 chr13 35065389 35065473 -84679425 + MIR3 SINE MIR 87 187 -21 3908 117 44 2 chr13 35065833 35066442 -84678456 + MER41B LTR ERV1 1 635 0 1061 186 320 53 chr13 35066897 35067385 -84677513 - MER51A LTR ERV1 -16 618 1 611 303 51 0 chr13 35067581 35067756 -84677142 - MIR SINE MIR -48 214 31 874 338 38 11 chr13 35068526 35068976 -84675922 + HERVL LTR ERVL 3893 4354 -1300 189 355 0 37 chr13 35070574 35070681 -84674217 - L2 LINE L2 -2497 817 715 22 35 0 0 chr13 35071055 35071084 -84673814 + AT_rich Low_complexity Low_complexity 1 29 0 465 268 57 0 chr13 35072284 35072407 -84672491 - L2 LINE L2 0 3313 3184 835 212 94 0 chr13 35072409 35072621 -84672277 - L1MCa LINE L1 -3413 3151 2920 * 871 277 5 8 chr13 35072613 35072882 -84672016 - L1MCa LINE L1 -5795 323 3 1161 306 23 24 chr13 35072887 35073741 -84671157 - HERV16 LTR ERVL -2419 2577 1664 865 320 48 17 chr13 35073774 35074252 -84670646 - HERV16 LTR ERVL -4221 775 283 484 241 42 47 chr13 35074473 35074685 -84670213 - LTR16B LTR ERVL -12 452 242 746 131 0 0 chr13 35074702 35074809 -84670089 + U6 snRNA snRNA 1 107 0 13665 174 29 19 chr13 35074809 35076357 -84668541 + L1PB3 LINE L1 2458 3990 -2880 2143 134 3 0 chr13 35076357 35076655 -84668243 + AluSx SINE Alu 1 299 -13 13665 174 29 19 chr13 35076655 35079337 -84665561 + L1PB3 LINE L1 3990 6721 -149 2244 112 0 13 chr13 35079337 35079650 -84665248 + AluSg SINE Alu 1 309 -1 13665 174 29 19 chr13 35079650 35079801 -84665097 + L1PB3 LINE L1 6721 6869 -1 409 338 25 50 chr13 35079850 35080051 -84664847 - LTR16B LTR ERVL -268 196 1 21 0 0 0 chr13 35080061 35080082 -84664816 + AT_rich Low_complexity Low_complexity 1 21 0 355 337 92 30 chr13 35080155 35080490 -84664408 - HAL1 LINE L1 -1846 661 306 22 0 0 0 chr13 35081148 35081170 -84663728 + AT_rich Low_complexity Low_complexity 1 22 0 2495 44 10 0 chr13 35082403 35082701 -84662197 - AluY SINE Alu -10 301 1 217 224 122 0 chr13 35084440 35084489 -84660409 + MER5B DNA MER1_type 50 104 -74 472 225 15 22 chr13 35084513 35084707 -84660191 + L1ME3 LINE L1 5654 5825 -337 * 3495 56 2 2 chr13 35084559 35085022 -84659876 + L1PA10 LINE L1 5704 6166 -2 2114 82 60 0 chr13 35085214 35085496 -84659402 + AluSx SINE Alu 1 299 -13 525 276 156 16 chr13 35085721 35085913 -84658985 - MIR SINE MIR -21 241 23 486 357 130 34 chr13 35086070 35086924 -84657974 + L2 LINE L2 1955 2890 -424 307 267 200 13 chr13 35087041 35087191 -84657707 + MER5B DNA MER1_type 1 178 0 746 260 41 32 chr13 35087199 35087418 -84657480 + MER58A DNA MER1_type 1 221 -3 266 298 6 57 chr13 35088390 35088548 -84656350 + MLT1J1 LTR MaLR 1 150 -296 372 268 6 55 chr13 35088631 35088814 -84656084 + MLT1J LTR MaLR 260 433 -78 23 0 0 0 chr13 35088894 35088917 -84655981 + AT_rich Low_complexity Low_complexity 1 23 0 314 89 13 127 chr13 35089082 35089115 -84655783 + L1MB4 LINE L1 6109 6129 -51 1866 166 3 0 chr13 35089115 35089410 -84655488 + AluJb SINE Alu 1 296 -16 314 89 13 127 chr13 35089410 35089455 -84655443 + L1MB4 LINE L1 6129 6178 -2 293 230 15 30 chr13 35091593 35091728 -84653170 + (TA)n Simple_repeat Simple_repeat 1 133 0 513 286 105 46 chr13 35091805 35092043 -84652855 - MIR SINE MIR -3 259 8 21 0 0 0 chr13 35092733 35092754 -84652144 + AT_rich Low_complexity Low_complexity 1 21 0 2217 111 0 29 chr13 35092801 35093117 -84651781 + AluSx SINE Alu 1 307 -5 543 53 0 0 chr13 35093119 35093194 -84651704 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 375 145 53 0 chr13 35093215 35093299 -84651599 - LTR38B LTR ERV1 -1 610 522 1140 149 70 13 chr13 35093326 35093554 -84651344 + LTR38B LTR ERV1 345 585 -25 820 299 12 16 chr13 35093635 35093886 -84651012 + LTR38B-int LTR ERV1 115 364 -1422 205 156 0 0 chr13 35094135 35094167 -84650731 + CT-rich Low_complexity Low_complexity 1 32 0 4996 147 73 79 chr13 35094168 35095532 -84649366 + MER4D-int LTR ERV1 100 1471 -2550 2339 79 0 25 chr13 35095532 35095848 -84649050 - AluY SINE Alu -3 308 1 4996 147 73 79 chr13 35095848 35097314 -84647584 + MER4D-int LTR ERV1 1471 4021 0 392 211 66 40 chr13 35097314 35097450 -84647448 + MER4D-int LTR ERV1 4594 4733 -1865 690 186 6 98 chr13 35097582 35097765 -84647133 + MER4D-int LTR ERV1 3787 3952 -4168 560 140 103 10 chr13 35098015 35098154 -84646744 + MER4D-int LTR ERV1 3950 6134 -624 1348 194 42 9 chr13 35098160 35098511 -84646387 + MER4D-int LTR ERV1 6385 7097 0 1329 105 9 22 chr13 35098523 35098752 -84646146 + MER4D LTR ERV1 9 234 -638 23 0 0 0 chr13 35099054 35099077 -84645821 + AT_rich Low_complexity Low_complexity 1 23 0 386 341 29 29 chr13 35099139 35099344 -84645554 - L1M4 LINE L1 -1957 4189 3985 21 0 0 0 chr13 35099351 35099372 -84645526 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 35099387 35099422 -84645476 + AT_rich Low_complexity Low_complexity 1 35 0 185 333 0 0 chr13 35099469 35099517 -84645381 - L2 LINE L2 -1045 2269 2222 2121 117 7 19 chr13 35099521 35099828 -84645070 - AluSq SINE Alu -10 303 1 231 269 45 0 chr13 35099828 35099895 -84645003 + MIR SINE MIR 120 189 -73 1814 260 53 13 chr13 35100158 35100685 -84644213 - L2 LINE L2 -1483 1831 1284 746 272 181 48 chr13 35100918 35101436 -84643462 + MLT1G1 LTR MaLR 1 587 -8 388 279 82 14 chr13 35101504 35101651 -84643247 + MIR SINE MIR 41 197 -65 1712 195 65 36 chr13 35102109 35102572 -84642326 - LTR2B LTR ERV1 0 490 1 189 386 14 73 chr13 35102578 35102798 -84642100 + L2 LINE L2 2972 3178 -94 22 35 0 0 chr13 35103022 35103051 -84641847 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr13 35103395 35103438 -84641460 + AT_rich Low_complexity Low_complexity 1 43 0 2410 74 0 10 chr13 35103618 35103927 -84640971 - AluSg SINE Alu -4 306 1 338 225 34 22 chr13 35104149 35104238 -84640660 - L2 LINE L2 -3 3310 3221 529 291 19 34 chr13 35104287 35104493 -84640405 - MIR SINE MIR -48 214 12 1720 90 59 67 chr13 35105948 35106304 -84638594 - MER4E LTR ERV1 -2 777 425 872 219 35 101 chr13 35106381 35106719 -84638179 + MLT2D LTR ERVL 91 406 -8 2022 112 7 20 chr13 35106850 35107144 -84637754 - AluSg SINE Alu -20 290 1 1690 222 158 21 chr13 35107244 35107557 -84637341 + L1MEc LINE L1 35 304 -6092 3670 81 140 27 chr13 35107557 35108150 -84636748 - PABL_A LTR ERV1 0 660 1 1690 222 158 21 chr13 35108150 35108511 -84636387 + L1MEc LINE L1 304 802 -5594 637 152 0 9 chr13 35108520 35108625 -84636273 - FLAM_C SINE Alu -35 108 5 307 320 128 57 chr13 35108702 35109068 -84635830 + L1ME LINE L1 4639 5030 -1116 330 272 130 6 chr13 35109299 35109468 -84635430 + L1ME LINE L1 5623 5812 -358 976 224 14 0 chr13 35109875 35110089 -84634809 - MER58A DNA MER1_type -7 217 1 2048 122 80 11 chr13 35110141 35110517 -84634381 - L1MA3 LINE L1 0 6305 5904 21 36 0 0 chr13 35111257 35111285 -84633613 + AT_rich Low_complexity Low_complexity 1 28 0 919 290 107 30 chr13 35112640 35113071 -84631827 + L2 LINE L2 2849 3312 -1 337 263 30 30 chr13 35114301 35114400 -84630498 + MIR SINE MIR 40 138 -70 2333 94 0 0 chr13 35116497 35116794 -84628104 + AluY SINE Alu 1 297 -14 3334 117 86 16 chr13 35116855 35117436 -84627462 + L1PA16 LINE L1 5545 6166 0 556 275 145 19 chr13 35117547 35117754 -84627144 + MIR SINE MIR 21 253 -9 2559 161 57 39 chr13 35118009 35118848 -84626050 - MER73 LTR ERVL -4 640 1 2172 112 10 0 chr13 35119341 35119644 -84625254 + AluSq SINE Alu 2 307 -6 704 103 0 47 chr13 35120153 35120260 -84624638 - FLAM_A SINE Alu -24 118 17 3376 144 29 10 chr13 35120807 35121397 -84623501 + MER7C DNA MER2_type 1 601 -1 472 185 198 51 chr13 35121466 35121623 -84623275 - MER5A DNA MER1_type 0 189 10 239 195 49 73 chr13 35123825 35123859 -84621039 + AluY SINE Alu 1 34 -266 3466 54 9 5 chr13 35123859 35124305 -84620593 + LTR7 LTR ERV1 1 448 -2 239 195 49 73 chr13 35124305 35124352 -84620546 + AluY SINE Alu 34 80 -220 19010 87 57 34 chr13 35124352 35127524 -84617374 + HERVH LTR ERV1 46 3290 -4423 3273 107 0 6 chr13 35127514 35128019 -84616879 + HERVH LTR ERV1 3492 3993 -3720 * 4086 138 6 1 chr13 35128021 35128680 -84616218 + HERVH LTR ERV1 4488 5149 -2564 1267 143 19 0 chr13 35128681 35128897 -84616001 + HERVH LTR ERV1 5600 5819 -1894 2443 71 45 13 chr13 35128897 35129275 -84615623 + HERVH LTR ERV1 7324 7713 0 3550 51 0 7 chr13 35129275 35129726 -84615172 + LTR7 LTR ERV1 1 448 -2 1829 147 0 4 chr13 35129728 35130008 -84614890 + AluSx SINE Alu 30 312 0 1731 246 79 13 chr13 35131665 35132198 -84612700 + MLT1G LTR MaLR 23 590 0 3258 59 2 7 chr13 35132221 35132665 -84612233 - LTR7 LTR ERV1 -8 442 1 2264 136 17 8 chr13 35133406 35133767 -84611131 - MLT1A1 LTR MaLR 0 365 2 283 244 24 0 chr13 35135068 35135150 -84609748 + L1MC4a LINE L1 5841 5924 -1884 2126 98 0 21 chr13 35135240 35135527 -84609371 + AluSx SINE Alu 1 281 -31 187 238 0 0 chr13 35135791 35135833 -84609065 - L2 LINE L2 0 3313 3272 275 372 24 64 chr13 35135899 35136195 -84608703 + L2 LINE L2 2936 3219 -53 1018 169 0 28 chr13 35136470 35136648 -84608250 + AluJb SINE Alu 123 295 -17 22 35 0 0 chr13 35137348 35137377 -84607521 + AT_rich Low_complexity Low_complexity 1 29 0 231 36 0 0 chr13 35137961 35137989 -84606909 + (CA)n Simple_repeat Simple_repeat 1 28 0 23 54 0 0 chr13 35138317 35138354 -84606544 + AT_rich Low_complexity Low_complexity 1 37 0 770 289 72 0 chr13 35138537 35138772 -84606126 - MIR SINE MIR 0 262 11 691 222 49 6 chr13 35139542 35139704 -84605194 - MIR SINE MIR -63 199 31 2000 136 0 37 chr13 35139744 35140067 -84604831 + AluSx SINE Alu 1 311 -1 183 80 0 0 chr13 35140540 35140565 -84604333 + (T)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr13 35140952 35140980 -84603918 + AT_rich Low_complexity Low_complexity 1 28 0 1080 165 52 19 chr13 35141930 35142142 -84602756 - MER20 DNA MER1_type 0 219 1 21 57 0 0 chr13 35142345 35142380 -84602518 + AT_rich Low_complexity Low_complexity 1 35 0 332 299 25 70 chr13 35143407 35143564 -84601334 + L2 LINE L2 3164 3313 0 682 233 99 31 chr13 35143932 35144621 -84600277 + L1MB5 LINE L1 5323 6082 -80 3655 170 40 28 chr13 35144621 35144870 -84600028 + MER44D DNA MER2_type 1 245 -2242 2155 121 32 22 chr13 35144870 35145241 -84599657 + THE1C LTR MaLR 1 375 0 3655 170 40 28 chr13 35145241 35145715 -84599183 + MER44D DNA MER2_type 245 605 0 1931 268 96 55 chr13 35145801 35146492 -84598406 + HAL1 LINE L1 90 751 -1756 222 105 0 0 chr13 35146492 35146530 -84598368 + (CA)n Simple_repeat Simple_repeat 1 38 0 1931 268 96 55 chr13 35146530 35146926 -84597972 + HAL1 LINE L1 751 1129 -1378 1683 115 35 8 chr13 35146926 35147187 -84597711 + AluSx SINE Alu 40 307 -5 1931 268 96 55 chr13 35147187 35147319 -84597579 + HAL1 LINE L1 1129 1254 -1253 1898 152 10 16 chr13 35147319 35147628 -84597270 + AluJo SINE Alu 1 307 -5 1931 268 96 55 chr13 35147628 35147655 -84597243 + HAL1 LINE L1 1254 1278 -1229 2049 86 0 4 chr13 35147655 35147922 -84596976 + AluY SINE Alu 41 306 -5 1931 268 96 55 chr13 35147922 35148125 -84596773 + HAL1 LINE L1 1278 1602 -905 904 275 128 18 chr13 35148220 35148718 -84596180 + HAL1 LINE L1 1857 2409 -98 1205 181 33 13 chr13 35148792 35149096 -84595802 - MER33 DNA MER1_type -6 318 9 289 315 158 7 chr13 35149696 35149842 -84595056 - MIR SINE MIR -9 253 86 626 197 105 7 chr13 35149842 35149994 -84594904 + MER58C DNA MER1_type 46 212 -3 898 164 175 26 chr13 35150046 35150235 -84594663 - MER20 DNA MER1_type 0 219 3 842 262 33 50 chr13 35150242 35150544 -84594354 + Charlie2 DNA MER1_type 2 298 -2564 1027 244 137 18 chr13 35150592 35151140 -84593758 + Charlie2 DNA MER1_type 2232 2844 -18 189 289 324 0 chr13 35151236 35151378 -84593520 - MIR SINE MIR -7 255 68 1027 116 0 43 chr13 35151435 35151599 -84593299 + FRAM SINE Alu 19 175 -1 22 0 0 0 chr13 35153964 35153986 -84590912 + GC_rich Low_complexity Low_complexity 1 22 0 1687 147 0 8 chr13 35154756 35155014 -84589884 - AluSx SINE Alu -15 297 42 527 123 0 0 chr13 35155014 35155087 -84589811 - AluS SINE Alu -240 73 1 1057 176 66 25 chr13 35155175 35155493 -84589405 - Charlie2 DNA MER1_type 0 2862 2532 1655 155 11 7 chr13 35155538 35155816 -84589082 + AluJb SINE Alu 1 279 -33 239 257 37 9 chr13 35155844 35155953 -84588945 - Charlie2 DNA MER1_type -376 2486 2375 2045 182 36 49 chr13 35155980 35156516 -84588382 + L1M4 LINE L1 4225 4755 -1391 2189 104 7 0 chr13 35156516 35156815 -84588083 + AluSp SINE Alu 1 301 -12 2045 182 36 49 chr13 35156815 35156834 -84588064 + L1M4 LINE L1 4755 4773 -1373 760 283 135 7 chr13 35156834 35157138 -84587760 + MER69 DNA AcHobo 286 628 -598 1172 185 198 0 chr13 35157144 35157542 -84587356 + MER69 DNA AcHobo 2043 2521 -5 273 192 39 26 chr13 35157559 35157637 -84587261 - Charlie2a DNA MER1_type -2176 686 608 471 256 279 0 chr13 35158285 35158504 -84586394 - Charlie2a DNA MER1_type -2569 293 14 468 273 159 18 chr13 35158527 35158723 -84586175 + MIR SINE MIR 5 237 -25 806 140 7 37 chr13 35158723 35158859 -84586039 + FLAM_C SINE Alu 2 133 0 468 273 159 18 chr13 35158859 35158882 -84586016 + MIR SINE MIR 237 255 -7 1658 175 0 45 chr13 35160198 35160506 -84584392 + AluJb SINE Alu 1 294 -18 234 91 0 0 chr13 35160666 35160699 -84584199 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 2777 190 44 10 chr13 35160940 35161534 -84583364 - MER90 LTR ERV1 0 614 1 1785 224 35 25 chr13 35161812 35162323 -84582575 + MER77 LTR ERV1 1 597 -8 346 250 13 0 chr13 35162568 35162644 -84582254 - L2 LINE L2 0 3272 3196 972 194 6 0 chr13 35162690 35162860 -84582038 - FRAM SINE Alu -6 170 1 2733 111 24 32 chr13 35163186 35163327 -84581571 + MER4E LTR ERV1 1 142 -624 482 95 12 60 chr13 35163327 35163411 -84581487 - MADE1 DNA Mariner 0 80 1 2733 111 24 32 chr13 35163411 35163455 -84581443 + MER4E LTR ERV1 142 185 -581 2845 104 60 39 chr13 35163455 35163937 -84580961 + LTR22B LTR ERVK 1 492 0 2733 111 24 32 chr13 35163937 35164358 -84580540 + MER4E LTR ERV1 185 766 0 207 338 26 0 chr13 35166574 35166651 -84578247 - MIR SINE MIR -128 134 56 219 330 25 85 chr13 35166784 35166902 -84577996 - MIR SINE MIR -151 111 1 378 309 79 26 chr13 35167048 35167200 -84577698 + MIR SINE MIR 52 211 -51 632 259 121 45 chr13 35167214 35167438 -84577460 + MIR SINE MIR 1 241 -21 26 0 0 0 chr13 35167451 35167477 -84577421 + AT_rich Low_complexity Low_complexity 1 26 0 2060 92 0 0 chr13 35167548 35167809 -84577089 + AluY SINE Alu 1 261 -50 322 278 21 21 chr13 35168070 35168167 -84576731 - MIR SINE MIR -3 259 163 1894 132 4 0 chr13 35168926 35169206 -84575692 - AluSq SINE Alu 0 313 33 2266 100 0 7 chr13 35169603 35169902 -84574996 + AluSx SINE Alu 1 297 -15 403 167 117 0 chr13 35170564 35170659 -84574239 - MER5A DNA MER1_type -77 112 4 399 119 0 0 chr13 35170886 35170953 -84573945 + (TC)n Simple_repeat Simple_repeat 2 68 0 185 81 0 27 chr13 35171294 35171331 -84573567 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 605 206 82 38 chr13 35171331 35171606 -84573292 - L1MD3 LINE L1 -11 7984 6080 326 340 106 30 chr13 35171606 35171974 -84572924 + L2 LINE L2 2102 2497 -817 337 305 16 75 chr13 35171980 35172084 -84572814 - MIR SINE MIR 0 262 172 481 250 44 61 chr13 35172084 35172264 -84572634 - MER69A DNA AcHobo 0 177 1 337 305 16 75 chr13 35172264 35172346 -84572552 - MIR SINE MIR -90 172 87 306 348 79 0 chr13 35172360 35172538 -84572360 + L2 LINE L2 2589 2780 -534 325 337 31 0 chr13 35173230 35173328 -84571570 + L2 LINE L2 3169 3269 -3 437 309 137 44 chr13 35173385 35173793 -84571105 + L2 LINE L2 2468 2913 -401 1249 141 5 0 chr13 35174193 35174392 -84570506 + LTR9B LTR ERV1 445 644 0 1232 136 0 0 chr13 35174434 35174633 -84570265 + HUERS-P3 LTR ERV1 8718 8916 -3 3050 106 50 10 chr13 35174641 35175142 -84569756 + LTR9B LTR ERV1 42 562 -82 21 36 0 0 chr13 35175142 35175170 -84569728 + AT_rich Low_complexity Low_complexity 1 28 0 204 212 45 91 chr13 35175734 35175800 -84569098 - L2 LINE L2 -40 3232 3170 2250 100 10 0 chr13 35176256 35176555 -84568343 + AluSc SINE Alu 1 302 -7 183 328 0 0 chr13 35177294 35177358 -84567540 - L2 LINE L2 0 3313 3250 256 259 121 52 chr13 35178024 35178140 -84566758 + MIR3 SINE MIR 58 181 -27 285 29 0 0 chr13 35178381 35178415 -84566483 + (CA)n Simple_repeat Simple_repeat 2 35 0 896 223 27 0 chr13 35178467 35178651 -84566247 - MER5A DNA MER1_type 0 189 1 567 29 0 0 chr13 35179109 35179178 -84565720 + (CA)n Simple_repeat Simple_repeat 2 70 0 2410 92 48 28 chr13 35180195 35180552 -84564346 + THE1B LTR MaLR 1 364 0 1356 134 99 95 chr13 35180724 35181038 -84563860 - AluJb SINE Alu 0 315 1 2201 105 11 0 chr13 35181345 35181631 -84563267 - AluSc SINE Alu -19 290 2 293 309 52 15 chr13 35182874 35183010 -84561888 - MIR SINE MIR -110 152 12 1883 153 3 31 chr13 35183073 35183393 -84561505 - AluJb SINE Alu -1 311 1 2209 109 0 6 chr13 35184068 35184380 -84560518 - AluSp SINE Alu -1 312 3 227 31 31 0 chr13 35184916 35184948 -84559950 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1708 156 11 7 chr13 35184951 35185226 -84559672 - AluJb SINE Alu -35 277 2 667 129 0 170 chr13 35186430 35186601 -84558297 + AluJb SINE Alu 4 145 -167 1924 129 7 4 chr13 35186601 35186880 -84558018 + AluSq SINE Alu 2 281 -32 444 82 0 0 chr13 35186880 35186941 -84557957 + (GAGAA)n Simple_repeat Simple_repeat 5 65 0 461 243 35 62 chr13 35193897 35194041 -84550857 - L2 LINE L2 -4 3309 3170 215 266 46 46 chr13 35194057 35194166 -84550732 - L2 LINE L2 -438 2876 2768 2061 291 102 16 chr13 35194195 35194995 -84549903 - L2 LINE L2 -518 2796 1928 185 229 72 60 chr13 35195032 35195115 -84549783 - L2 LINE L2 -3 3310 3227 351 207 75 126 chr13 35195996 35196046 -84548852 + L1MEd LINE L1 436 487 -5632 2237 96 0 0 chr13 35196046 35196352 -84548546 - AluSx SINE Alu 0 306 1 351 207 75 126 chr13 35196352 35196474 -84548424 + L1MEd LINE L1 487 600 -5519 687 264 38 27 chr13 35196618 35196910 -84547988 + L1MEd LINE L1 895 1189 -4930 234 106 85 0 chr13 35196909 35196956 -84547942 + L1MB5 LINE L1 6108 6158 -16 * 16525 151 51 15 chr13 35197037 35199397 -84545501 + L1M1 LINE L1 602 3180 -4385 1419 62 21 0 chr13 35199397 35199589 -84545309 - L1PA4 LINE L1 0 6155 5960 16525 151 51 15 chr13 35199589 35201366 -84543532 + L1M1 LINE L1 3180 4891 -2674 863 172 0 0 chr13 35201843 35202012 -84542886 + CT-rich Low_complexity Low_complexity 4 172 0 847 92 42 0 chr13 35202060 35202180 -84542718 - AluJo SINE Alu -174 138 14 1740 163 3 11 chr13 35203728 35204048 -84540850 + AluJb SINE Alu 3 320 0 2173 127 0 20 chr13 35204690 35204990 -84539908 + AluSx SINE Alu 3 296 -16 22 56 0 0 chr13 35205128 35205164 -84539734 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 35205819 35205848 -84539050 + AT_rich Low_complexity Low_complexity 1 29 0 2112 173 6 6 chr13 35206424 35206788 -84538110 - MLT1A1 LTR MaLR 0 365 2 1907 155 30 19 chr13 35206995 35207357 -84537541 - THE1C LTR MaLR -9 366 1 686 270 78 15 chr13 35207460 35207664 -84537234 - MIR SINE MIR -43 219 3 26 64 0 0 chr13 35208061 35208108 -84536790 + AT_rich Low_complexity Low_complexity 1 47 0 710 175 9 0 chr13 35209355 35209469 -84535429 + AluJo SINE Alu 6 120 -192 22 0 0 0 chr13 35209469 35209491 -84535407 + AT_rich Low_complexity Low_complexity 1 22 0 1154 188 0 5 chr13 35209500 35209697 -84535201 + AluJo SINE Alu 101 296 -16 2009 146 7 3 chr13 35210521 35210823 -84534075 - AluSx SINE Alu -9 303 1 2269 114 0 3 chr13 35211422 35211728 -84533170 + AluSc SINE Alu 1 305 -4 1769 294 127 41 chr13 35211921 35212289 -84532609 - L2 LINE L2 0 3313 2978 207 0 0 0 chr13 35212289 35212312 -84532586 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1769 294 127 41 chr13 35212312 35212503 -84532395 - L2 LINE L2 -335 2978 2805 2116 133 7 0 chr13 35212503 35212804 -84532094 - AluSx SINE Alu -5 307 5 1769 294 127 41 chr13 35212804 35213516 -84531382 - L2 LINE L2 -508 2805 1941 254 349 89 29 chr13 35213894 35214328 -84530570 - L2 LINE L2 -181 3091 2633 2088 112 4 0 chr13 35214414 35214691 -84530207 + AluSx SINE Alu 2 279 -33 450 0 0 0 chr13 35214691 35214741 -84530157 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 198 252 74 0 chr13 35217093 35217160 -84527738 + MIR SINE MIR 23 95 -113 1573 148 64 33 chr13 35217435 35217765 -84527133 + THE1C LTR MaLR 1 340 -35 2507 55 0 10 chr13 35217977 35218288 -84526610 + AluY SINE Alu 1 308 -3 1687 188 10 3 chr13 35218485 35218777 -84526121 - AluJb SINE Alu -18 294 1 8682 172 35 20 chr13 35219170 35219846 -84525052 - L1 LINE L1 -1788 4358 3693 2293 116 0 3 chr13 35219846 35220157 -84524741 - AluSq SINE Alu -3 310 1 8682 172 35 20 chr13 35220157 35221384 -84523514 - L1 LINE L1 -2453 3693 2427 2298 113 0 0 chr13 35221384 35221685 -84523213 + AluSq SINE Alu 1 301 -12 309 317 57 8 chr13 35223137 35223260 -84521638 + L2 LINE L2 3142 3270 -2 941 196 20 0 chr13 35223286 35223490 -84521408 + LTR55 LTR ERV 1 208 -340 239 300 100 20 chr13 35223645 35223745 -84521153 - MIR SINE MIR -64 144 37 617 231 113 25 chr13 35224026 35224264 -84520634 + MIR SINE MIR 4 262 0 23 33 0 0 chr13 35225115 35225145 -84519753 + AT_rich Low_complexity Low_complexity 1 30 0 255 230 0 27 chr13 35226597 35226671 -84518227 + MLT1B LTR MaLR 220 291 -99 529 173 19 10 chr13 35226679 35226783 -84518115 - MLT1A1 LTR MaLR -78 287 183 12168 144 19 9 chr13 35226783 35229692 -84515206 + L1PA11 LINE L1 3262 6172 -2 232 317 92 43 chr13 35230634 35230798 -84514100 + L2 LINE L2 2885 3056 -257 205 366 40 40 chr13 35231015 35231116 -84513782 + L2 LINE L2 3169 3269 -3 1029 105 11 22 chr13 35232077 35232258 -84512640 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 465 138 0 0 chr13 35232258 35232338 -84512560 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 600 128 0 21 chr13 35232365 35232459 -84512439 - AluJ/FLAM SINE Alu -220 92 1 2087 141 3 3 chr13 35232584 35232890 -84512008 + AluJb SINE Alu 1 306 -6 616 245 170 0 chr13 35233443 35233602 -84511296 + MER5A DNA MER1_type 4 189 0 338 258 129 45 chr13 35234793 35234948 -84509950 + MIR SINE MIR 89 256 -6 312 264 35 11 chr13 35234959 35235046 -84509852 - MIR SINE MIR -165 97 9 180 314 0 0 chr13 35235060 35235111 -84509787 + L2 LINE L2 3007 3057 -215 249 288 0 0 chr13 35235633 35235706 -84509192 + (TA)n Simple_repeat Simple_repeat 2 74 0 1945 113 45 3 chr13 35237597 35237889 -84507009 + AluSx SINE Alu 1 304 -8 1147 188 58 14 chr13 35237889 35238339 -84506559 + MER63C DNA MER1_type 22 527 -403 1602 180 30 33 chr13 35238339 35238672 -84506226 - MER58B DNA MER1_type -1 340 9 1767 191 37 29 chr13 35238680 35238978 -84505920 + MER63C DNA MER1_type 519 822 -239 2345 90 3 3 chr13 35238978 35239289 -84505609 - AluSx SINE Alu -1 311 1 1767 191 37 29 chr13 35239289 35239398 -84505500 + MER63C DNA MER1_type 822 929 -2 181 226 19 19 chr13 35239460 35239513 -84505385 - L3 LINE CR1 -234 1343 1291 509 283 60 5 chr13 35239626 35239810 -84505088 - MIR SINE MIR -4 258 65 216 316 173 12 chr13 35239909 35239971 -84504927 + L2 LINE L2 2334 2385 -929 252 0 0 0 chr13 35239971 35239999 -84504899 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 216 316 173 12 chr13 35239999 35240104 -84504794 + L2 LINE L2 2385 2528 -786 351 135 144 58 chr13 35240104 35240208 -84504690 + Tigger3(Golem) DNA MER2_type 2762 2874 -155 2358 61 0 10 chr13 35240230 35240527 -84504371 + AluY SINE Alu 1 294 -17 2185 127 0 0 chr13 35240530 35240830 -84504068 + AluSx SINE Alu 1 300 -12 251 304 0 0 chr13 35240830 35240886 -84504012 + Tigger3(Golem) DNA MER2_type 2973 3028 -1 3127 153 19 5 chr13 35240887 35241708 -84503190 - L1M2 LINE L1 -505 7205 6378 7624 190 30 41 chr13 35241718 35242344 -84502554 - L1M2 LINE L1 -2098 5467 4835 2367 93 0 10 chr13 35242344 35242654 -84502244 - AluSx SINE Alu -5 307 1 7624 190 30 41 chr13 35242654 35244215 -84500683 - L1M2 LINE L1 -2730 4835 3313 588 262 85 0 chr13 35244288 35244452 -84500446 + MIR SINE MIR 79 256 -6 207 140 18 211 chr13 35244771 35244885 -84500013 - MER91C DNA MER1_type -32 108 17 8576 166 21 25 chr13 35245405 35248056 -84496842 - L1MA4 LINE L1 -230 7489 4856 39707 62 5 1 chr13 35248072 35254197 -84490701 - L1PA5 LINE L1 -4 6150 1 3757 210 29 20 chr13 35254197 35255261 -84489637 - L1MA4 LINE L1 -2696 4869 3796 1171 248 16 9 chr13 35255278 35255593 -84489305 + L1M1 LINE L1 1782 2098 -5467 2069 247 35 42 chr13 35255731 35256182 -84488716 - L1MA4 LINE L1 -6979 586 133 1267 91 0 23 chr13 35256182 35256358 -84488540 - AluSg/x SINE Alu 0 312 141 2315 93 3 0 chr13 35256196 35256497 -84488401 - AluSx SINE Alu -10 302 1 2069 247 35 42 chr13 35256497 35256605 -84488293 - L1MA4 LINE L1 -7571 4294967290 17 225 276 110 68 chr13 35256616 35256779 -84488119 - L2 LINE L2 -245 3027 2858 6171 201 27 30 chr13 35258403 35260798 -84484100 + L1M3f LINE L1 6 2382 -3946 644 36 12 0 chr13 35260798 35260881 -84484017 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 2513 176 47 11 chr13 35261405 35261431 -84483467 - L1MA4 LINE L1 -7 6995 6971 1963 124 0 0 chr13 35261431 35261706 -84483192 + AluSx SINE Alu 35 309 -3 2513 176 47 11 chr13 35261706 35262297 -84482601 - L1MA4 LINE L1 -31 6971 6309 9239 192 25 10 chr13 35262325 35264396 -84480502 - L1MA4 LINE L1 -1769 5079 2978 1049 178 0 0 chr13 35264396 35264570 -84480328 - FRAM SINE Alu -3 173 1 3384 189 53 30 chr13 35264572 35265083 -84479815 - L1MA4 LINE L1 -3862 2986 2441 2282 152 5 13 chr13 35265083 35265459 -84479439 + THE1C LTR MaLR 1 373 -2 3384 189 53 30 chr13 35265459 35265901 -84478997 - L1MA4 LINE L1 -4407 2441 2011 236 30 30 0 chr13 35265943 35265976 -84478922 + (TTA)n Simple_repeat Simple_repeat 3 36 0 25611 28 0 0 chr13 35265976 35269789 -84475109 - L1PA3 LINE L1 -18 6137 2326 600 240 76 70 chr13 35270256 35270529 -84474369 + L1MC4 LINE L1 7495 7824 -171 409 276 24 24 chr13 35271286 35271420 -84473478 - MLT1I LTR MaLR -232 177 58 225 0 0 0 chr13 35271815 35271840 -84473058 + (TA)n Simple_repeat Simple_repeat 2 26 0 359 226 71 0 chr13 35271840 35271924 -84472974 - L1MC4 LINE L1 -1339 6703 6614 345 248 38 30 chr13 35272180 35272313 -84472585 - MER113 DNA MER1_type? -385 136 3 381 287 60 53 chr13 35273057 35273489 -84471409 + L1MEc LINE L1 1877 2311 -4085 325 361 40 83 chr13 35273729 35273970 -84470928 + L2 LINE L2 2962 3189 -83 1620 234 81 32 chr13 35273970 35274462 -84470436 - LTR40a LTR ERVL -1 518 3 325 361 40 83 chr13 35274462 35274522 -84470376 + L2 LINE L2 3189 3250 -22 21 0 0 0 chr13 35274534 35274555 -84470343 + AT_rich Low_complexity Low_complexity 1 21 0 4136 81 21 2 chr13 35275193 35275771 -84469127 + L1PA10 LINE L1 5575 6163 -5 912 175 78 53 chr13 35276169 35276375 -84468523 - AluJb SINE Alu -15 297 87 2584 96 6 3 chr13 35276589 35276943 -84467955 + HSMAR1 DNA Mariner 931 1285 -2 4460 119 53 24 chr13 35277596 35278383 -84466515 - L1MA5 LINE L1 0 6300 5491 576 244 0 16 chr13 35278453 35278595 -84466303 + FLAM_A SINE Alu 3 133 0 180 0 0 0 chr13 35278938 35278958 -84465940 + (TG)n Simple_repeat Simple_repeat 2 21 0 25 51 0 0 chr13 35278958 35278997 -84465901 + AT_rich Low_complexity Low_complexity 1 39 0 252 186 29 43 chr13 35279021 35279091 -84465807 + MIR SINE MIR 194 262 0 339 319 67 14 chr13 35279296 35279506 -84465392 - HAL1 LINE L1 -746 1761 1541 694 224 29 17 chr13 35279653 35279827 -84465071 + MIR SINE MIR 3 178 -84 780 132 0 8 chr13 35280215 35280344 -84464554 + L1MA3 LINE L1 6173 6300 -5 7352 93 12 18 chr13 35280470 35281533 -84463365 + MER11C LTR ERVK 1 1057 -14 21 0 0 0 chr13 35282465 35282486 -84462412 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr13 35282767 35282792 -84462106 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr13 35283278 35283315 -84461583 + AT_rich Low_complexity Low_complexity 1 37 0 229 267 56 78 chr13 35283434 35283524 -84461374 + MIR SINE MIR 31 118 -90 593 129 65 0 chr13 35283706 35283799 -84461099 + LTR54 LTR ERV1 1 99 -411 439 275 170 10 chr13 35283802 35284039 -84460859 + MER57A LTR ERV1 108 351 -52 1560 125 129 22 chr13 35284109 35284381 -84460517 - AluSg1 SINE Alu -8 301 1 2264 125 0 0 chr13 35285325 35285636 -84459262 - AluSx SINE Alu -1 311 1 298 342 54 92 chr13 35286065 35286544 -84458354 - L2 LINE L2 0 3272 2812 2294 83 0 35 chr13 35286569 35286881 -84458017 + AluY SINE Alu 1 301 -10 1544 133 0 4 chr13 35287064 35287289 -84457609 + AluSg/x SINE Alu 69 292 -20 207 0 0 0 chr13 35287289 35287312 -84457586 + (TA)n Simple_repeat Simple_repeat 1 23 0 453 116 0 0 chr13 35287312 35287381 -84457517 + (CA)n Simple_repeat Simple_repeat 2 70 0 21 0 0 0 chr13 35287399 35287420 -84457478 + AT_rich Low_complexity Low_complexity 1 21 0 417 291 107 46 chr13 35287451 35287908 -84456990 + L1MDa LINE L1 1692 2176 -4364 2169 133 128 8 chr13 35287912 35288294 -84456604 + MSTA LTR MaLR 1 428 0 8325 188 38 7 chr13 35288294 35289896 -84455002 + MSTA-int LTR MaLR 1 1651 0 1766 160 81 64 chr13 35289896 35290315 -84454583 + MSTA LTR MaLR 1 426 -2 14251 129 66 33 chr13 35290374 35291310 -84453588 - Tigger2 DNA MER2_type 0 2718 1814 1921 133 3 17 chr13 35291310 35291611 -84453287 - AluJo SINE Alu -11 301 5 14251 129 66 33 chr13 35291611 35292572 -84452326 - Tigger2 DNA MER2_type -904 1814 886 2029 124 21 0 chr13 35292572 35292863 -84452035 - AluSx SINE Alu -15 297 1 14251 129 66 33 chr13 35292863 35293250 -84451648 - Tigger2 DNA MER2_type -1832 886 513 2306 86 17 0 chr13 35293250 35293540 -84451358 - AluSq SINE Alu -18 295 1 14251 129 66 33 chr13 35293540 35293882 -84451016 - Tigger2 DNA MER2_type -2205 513 3 347 285 161 0 chr13 35294113 35294250 -84450648 + MIR SINE MIR 77 235 -27 2381 88 0 3 chr13 35294267 35294573 -84450325 + AluSq SINE Alu 1 305 -8 238 268 106 73 chr13 35295033 35295117 -84449781 - L2 LINE L2 -1 3312 3221 2346 82 7 0 chr13 35295117 35295411 -84449487 - AluSp SINE Alu -16 297 2 238 268 106 73 chr13 35295411 35295449 -84449449 - L2 LINE L2 -92 3221 3186 520 256 298 5 chr13 35295588 35295779 -84449119 + MIR SINE MIR 5 251 -11 24 0 0 0 chr13 35295904 35295928 -84448970 + AT_rich Low_complexity Low_complexity 1 24 0 625 192 0 0 chr13 35295932 35296036 -84448862 - FRAM SINE Alu -32 144 41 1815 150 10 23 chr13 35297188 35297495 -84447403 - AluJb SINE Alu -9 303 1 202 250 0 0 chr13 35297699 35297735 -84447163 - MIR SINE MIR -112 150 115 1922 127 10 7 chr13 35298403 35298695 -84446203 - AluSq SINE Alu -20 293 1 768 185 0 7 chr13 35300707 35300842 -84444056 - AluJb SINE Alu -23 289 156 332 167 306 9 chr13 35300843 35300951 -84443947 - HAL1 LINE L1 -1280 1227 1088 898 174 27 0 chr13 35300951 35301100 -84443798 - AluJb SINE Alu -159 153 1 999 282 175 18 chr13 35301711 35302364 -84442534 + HAL1 LINE L1 578 1332 -1175 * 3080 150 34 14 chr13 35302346 35303258 -84441640 + L1MA7 LINE L1 4890 5813 -478 786 71 0 18 chr13 35303259 35303372 -84441526 + LTR17 LTR ERV1 256 366 -414 12849 51 1 10 chr13 35303372 35304953 -84439945 + HERV17 LTR ERV1 5582 7147 -1479 308 0 0 0 chr13 35304949 35304985 -84439913 + HERV17 LTR ERV1 7510 7545 -1081 * 2248 60 28 0 chr13 35304978 35305262 -84439636 + HERV17 LTR ERV1 8335 8626 0 2436 76 0 9 chr13 35305262 35305591 -84439307 + LTR17 LTR ERV1 1 326 -454 21 0 0 0 chr13 35305594 35305615 -84439283 + AT_rich Low_complexity Low_complexity 1 21 0 2347 134 74 42 chr13 35305615 35306086 -84438812 + L1MA7 LINE L1 5796 6281 -10 1375 249 218 32 chr13 35306092 35307084 -84437814 + HAL1 LINE L1 1332 2507 0 964 155 7 7 chr13 35307138 35307286 -84437612 - AluJo/FRAM SINE Alu -18 284 137 1351 184 0 13 chr13 35307326 35307554 -84437344 - AluSq SINE Alu -88 225 1 1216 204 113 31 chr13 35307625 35307743 -84437155 - MER2 DNA MER2_type -1 344 237 1657 157 51 3 chr13 35307743 35308036 -84436862 + AluJb SINE Alu 1 307 -5 1216 204 113 31 chr13 35308036 35308235 -84436663 - MER2 DNA MER2_type -108 237 1 25 31 0 0 chr13 35308314 35308346 -84436552 + AT_rich Low_complexity Low_complexity 1 32 0 2289 92 0 20 chr13 35308402 35308697 -84436201 - AluSx SINE Alu -23 289 1 650 191 9 9 chr13 35309124 35309239 -84435659 - AluJb SINE Alu -196 116 2 1074 163 153 42 chr13 35309361 35309561 -84435337 + MER33 DNA MER1_type 5 248 -2337 1510 159 28 42 chr13 35309561 35309850 -84435048 - AluJo SINE Alu -17 295 11 1074 163 153 42 chr13 35309850 35309937 -84434961 + MER33 DNA MER1_type 248 324 0 414 302 56 73 chr13 35310502 35310790 -84434108 - L2 LINE L2 0 3313 3031 216 265 204 8 chr13 35310972 35311104 -84433794 - L2 LINE L2 -710 2604 2447 400 306 82 39 chr13 35311145 35311265 -84433633 - L2 LINE L2 -1311 2003 1890 2059 97 68 0 chr13 35311265 35311544 -84433354 + AluSq SINE Alu 1 298 -15 400 306 82 39 chr13 35311544 35311704 -84433194 - L2 LINE L2 -1424 1890 1711 898 205 0 0 chr13 35313128 35313284 -84431614 - FRAM SINE Alu -21 155 1 2282 119 0 0 chr13 35313550 35313860 -84431038 + AluSx SINE Alu 1 310 -2 644 238 79 46 chr13 35313860 35314082 -84430816 + MIR SINE MIR 15 252 -10 24 0 0 0 chr13 35316017 35316041 -84428857 + AT_rich Low_complexity Low_complexity 1 24 0 242 28 0 28 chr13 35316122 35316158 -84428740 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2167 99 0 3 chr13 35316161 35316444 -84428454 - AluSx SINE Alu -30 282 1 222 152 30 30 chr13 35316642 35316708 -84428190 + (TA)n Simple_repeat Simple_repeat 1 66 0 2102 99 42 0 chr13 35316941 35317224 -84427674 + AluSg SINE Alu 1 295 -15 2236 108 10 0 chr13 35317238 35317543 -84427355 + AluSx SINE Alu 1 308 -4 2087 118 7 13 chr13 35317971 35318277 -84426621 + AluSx SINE Alu 1 304 -8 21 57 0 0 chr13 35318671 35318706 -84426192 + AT_rich Low_complexity Low_complexity 1 35 0 673 282 102 98 chr13 35318963 35319317 -84425581 + L1MC4a LINE L1 4204 4555 -1591 2471 67 0 0 chr13 35319317 35319616 -84425282 + AluY SINE Alu 1 299 -12 673 282 102 98 chr13 35319616 35320338 -84424560 + L1MC4a LINE L1 4555 5284 -862 290 248 71 28 chr13 35320342 35320483 -84424415 + L1MC4a LINE L1 5287 5433 -2375 595 229 264 14 chr13 35320524 35320812 -84424086 + L1MC4a LINE L1 5574 5933 -1875 227 252 30 82 chr13 35320964 35321099 -84423799 - L1ME4a LINE L1 -28 6093 5966 1436 200 144 71 chr13 35321213 35321535 -84423363 - L1MC5 LINE L1 -54 7907 7610 2036 127 0 7 chr13 35321535 35321826 -84423072 + AluSc SINE Alu 1 289 -20 1436 200 144 71 chr13 35321826 35322098 -84422800 - L1MC5 LINE L1 -351 7610 7269 354 291 124 8 chr13 35322125 35322359 -84422539 - L1ME4a LINE L1 -303 5818 5558 402 140 0 2 chr13 35322364 35322601 -84422297 + AluJo SINE Alu 22 305 -7 24 0 0 0 chr13 35322678 35322702 -84422196 + AT_rich Low_complexity Low_complexity 1 24 0 2246 123 10 0 chr13 35322751 35323060 -84421838 + AluSx SINE Alu 1 312 0 2218 115 0 0 chr13 35323070 35323366 -84421532 + AluSx SINE Alu 1 296 -16 669 196 155 20 chr13 35323969 35324117 -84420781 + AluJb SINE Alu 131 298 -14 2152 127 7 0 chr13 35324119 35324418 -84420480 + AluSx SINE Alu 6 306 -6 2149 104 7 3 chr13 35324496 35324784 -84420114 - AluSg SINE Alu -15 295 7 2145 142 0 0 chr13 35324791 35325093 -84419805 - AluSx SINE Alu -10 302 1 245 272 88 44 chr13 35325724 35325838 -84419060 + MIR3 SINE MIR 71 189 -19 295 338 96 15 chr13 35326544 35326680 -84418218 - L2 LINE L2 0 3272 3126 268 227 46 151 chr13 35326812 35327050 -84417848 + MER102a DNA MER1_type 108 320 -10 196 402 0 0 chr13 35327089 35327171 -84417727 - L2 LINE L2 -644 2670 2589 378 184 0 0 chr13 35327657 35327733 -84417165 + (TG)n Simple_repeat Simple_repeat 2 77 0 247 319 22 11 chr13 35328043 35328134 -84416764 - MIR SINE MIR -158 104 13 254 244 23 58 chr13 35328297 35328383 -84416515 + L2 LINE L2 3146 3228 -44 897 195 83 10 chr13 35329753 35329954 -84414944 + MIR SINE MIR 41 257 -5 2221 108 10 0 chr13 35329974 35330271 -84414627 + AluSp SINE Alu 1 300 -13 511 201 117 7 chr13 35330297 35330451 -84414447 - LTR50 LTR ERVL -602 193 23 180 293 40 61 chr13 35330492 35330591 -84414307 + MIR SINE MIR 116 212 -50 617 242 13 19 chr13 35331964 35332121 -84412777 + MER3 DNA MER1_type 1 156 -53 3027 218 37 48 chr13 35332121 35332389 -84412509 - L1ME1 LINE L1 -24 6142 5873 2223 85 3 0 chr13 35332389 35332699 -84412199 - AluSp SINE Alu 0 311 1 3027 218 37 48 chr13 35332699 35333806 -84411092 - L1ME1 LINE L1 -293 5873 4777 2184 96 0 0 chr13 35333806 35334115 -84410783 - AluSx SINE Alu 0 318 10 3027 218 37 48 chr13 35334115 35334177 -84410721 - L1ME1 LINE L1 -1389 4777 4716 237 146 0 0 chr13 35334277 35334318 -84410580 + L1MB3 LINE L1 6143 6183 0 296 268 8 73 chr13 35334424 35334547 -84410351 + MIR3 SINE MIR 62 176 -32 1952 150 3 0 chr13 35334556 35334850 -84410048 + AluSq SINE Alu 1 295 -18 180 0 0 0 chr13 35334853 35334873 -84410025 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 367 321 28 0 chr13 35334886 35334995 -84409903 + MER81 DNA DNA 3 114 0 454 247 62 28 chr13 35335073 35335268 -84409630 - MIR SINE MIR -6 256 4 274 183 67 0 chr13 35335281 35335341 -84409557 - MIR SINE MIR -13 249 186 2428 60 0 29 chr13 35335343 35335659 -84409239 - AluY SINE Alu -4 307 1 420 211 106 10 chr13 35335789 35335893 -84409005 - MER81 DNA DNA 0 114 1 387 0 0 0 chr13 35336061 35336104 -84408794 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1140 152 16 0 chr13 35336544 35336735 -84408163 + AluSg/x SINE Alu 115 308 -2 318 296 83 35 chr13 35336735 35336904 -84407994 - L2 LINE L2 -1211 2103 1927 240 130 0 0 chr13 35336938 35336984 -84407914 + (TG)n Simple_repeat Simple_repeat 1 46 0 1892 160 10 0 chr13 35337360 35337653 -84407245 + AluJo SINE Alu 2 297 -15 1989 124 0 0 chr13 35338978 35339268 -84405630 + L1P5 LINE L1 5517 5806 -348 635 281 112 10 chr13 35339552 35339918 -84404980 + L1ME3 LINE L1 5217 5630 -540 314 222 122 0 chr13 35339919 35340009 -84404889 + MER5A DNA MER1_type 9 109 -80 517 231 22 45 chr13 35340067 35340201 -84404697 + MER5B DNA MER1_type 44 174 -4 487 214 29 103 chr13 35340244 35340298 -84404600 + L1ME3 LINE L1 5717 5773 -389 1713 159 7 13 chr13 35340298 35340600 -84404298 + AluJb SINE Alu 1 300 -12 487 214 29 103 chr13 35340600 35340729 -84404169 + L1ME3 LINE L1 5773 5880 -282 2160 104 7 0 chr13 35340729 35341026 -84403872 + AluSg SINE Alu 1 299 -11 487 214 29 103 chr13 35341026 35341084 -84403814 + L1ME3 LINE L1 5880 5941 -221 231 160 67 27 chr13 35341098 35341173 -84403725 - L1MCa LINE L1 -4363 2063 1986 323 165 12 106 chr13 35341629 35341714 -84403184 + LTR67 LTR ERVL 477 553 -4 1925 156 3 0 chr13 35343017 35343318 -84401580 - AluJo SINE Alu -10 302 1 379 236 11 11 chr13 35344899 35344988 -84399910 - L2 LINE L2 -1 3312 3224 249 270 43 37 chr13 35345151 35345314 -84399584 + L2 LINE L2 878 1041 -2273 1293 281 155 35 chr13 35345315 35345941 -84398957 + Charlie2a DNA MER1_type 1 701 -2161 2753 151 61 30 chr13 35345944 35346486 -84398412 - L1MC3 LINE L1 0 7785 7227 1435 259 65 79 chr13 35346486 35346895 -84398003 + Charlie2a DNA MER1_type 666 1079 -1783 842 37 148 0 chr13 35346895 35347003 -84397895 + L1PA13 LINE L1 6036 6159 -4 1435 259 65 79 chr13 35347003 35347594 -84397304 + Charlie2a DNA MER1_type 1079 1652 -1210 2038 138 3 0 chr13 35347594 35347884 -84397014 + AluSp SINE Alu 1 291 -22 1344 213 32 23 chr13 35347893 35348203 -84396695 + L1MDa LINE L1 86 398 -6142 319 259 49 3 chr13 35348304 35348459 -84396439 - L2 LINE L2 -243 3070 2873 2139 307 137 28 chr13 35348738 35350056 -84394842 - L2 LINE L2 -658 2656 1196 203 197 30 45 chr13 35350489 35350555 -84394343 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 375 254 149 29 chr13 35351476 35351668 -84393230 + MIR SINE MIR 32 249 -13 301 277 11 53 chr13 35351839 35351933 -84392965 + MIR SINE MIR 60 149 -59 191 184 102 0 chr13 35351957 35352006 -84392892 + MIR3 SINE MIR 132 185 -23 416 262 200 7 chr13 35352983 35353273 -84391625 - L1ME LINE L1 -567 5603 5258 638 279 76 18 chr13 35353306 35353582 -84391316 - MLT1J LTR MaLR -151 360 69 195 267 198 0 chr13 35353589 35353675 -84391223 + L3 LINE CR1 1154 1256 -321 261 309 12 36 chr13 35354419 35354503 -84390395 - L2 LINE L2 -15 3257 3176 560 121 0 0 chr13 35354960 35355043 -84389855 + AluJ/FRAM SINE Alu 230 312 0 346 215 0 38 chr13 35355059 35355138 -84389760 + FLAM_A SINE Alu 41 116 -17 2207 119 0 0 chr13 35355204 35355507 -84389391 - AluSx SINE Alu -9 303 1 602 184 128 28 chr13 35355567 35355708 -84389190 - L2 LINE L2 0 3313 3159 599 268 193 5 chr13 35355830 35356043 -84388855 + MIR SINE MIR 9 261 -1 425 132 88 0 chr13 35357014 35357082 -84387816 + MER5A DNA MER1_type 2 75 -114 1236 161 72 14 chr13 35357084 35357124 -84387774 + AluJb SINE Alu 1 37 -275 4017 139 6 35 chr13 35357124 35357778 -84387120 - MER41B LTR ERV1 0 635 1 1236 161 72 14 chr13 35357778 35357960 -84386938 + AluJb SINE Alu 37 236 -76 213 254 0 34 chr13 35358805 35358864 -84386034 + L2 LINE L2 1761 1817 -1497 342 286 17 50 chr13 35358886 35358953 -84385945 + MER5B DNA MER1_type 1 64 -114 2097 143 140 29 chr13 35358953 35359338 -84385560 + MSTA LTR MaLR 1 428 0 342 286 17 50 chr13 35359338 35359389 -84385509 + MER5B DNA MER1_type 64 115 -63 1645 176 0 21 chr13 35359495 35359785 -84385113 - AluJo SINE Alu -24 288 5 3343 153 24 43 chr13 35360361 35360887 -84384011 + MER41B LTR ERV1 1 342 -136 2316 84 3 34 chr13 35360887 35361210 -84383688 - AluSp SINE Alu 0 313 1 3343 153 24 43 chr13 35361210 35361333 -84383565 + MER41B LTR ERV1 342 466 -12 801 223 0 48 chr13 35361362 35361550 -84383348 - LTR16A LTR ERVL -13 437 259 227 323 46 0 chr13 35361588 35361653 -84383245 - MIR SINE MIR -174 88 21 576 209 26 89 chr13 35361691 35361725 -84383173 + MER106A DNA MER1_type 15 50 -186 1795 166 0 17 chr13 35361725 35362026 -84382872 - AluJo SINE Alu -15 297 2 576 209 26 89 chr13 35362026 35362182 -84382716 + MER106A DNA MER1_type 50 193 -43 2240 66 7 0 chr13 35362190 35362464 -84382434 + AluSp SINE Alu 1 276 -37 333 0 0 0 chr13 35363014 35363051 -84381847 + (CA)n Simple_repeat Simple_repeat 2 38 0 1234 215 52 17 chr13 35363082 35363370 -84381528 + AluJb SINE Alu 1 298 -14 340 333 74 19 chr13 35363966 35364128 -84380770 + L2 LINE L2 3077 3247 -25 342 291 66 44 chr13 35364544 35364726 -84380172 + L3b LINE CR1 1181 1366 -217 388 228 13 0 chr13 35364787 35364866 -84380032 + MER5A DNA MER1_type 32 111 -78 1298 197 55 39 chr13 35365059 35365389 -84379509 - MLT1B LTR MaLR -41 349 15 226 179 60 48 chr13 35367220 35367304 -84377594 + HSMAR1 DNA Mariner 1 85 -1202 502 238 74 8 chr13 35367636 35367758 -84377140 - L2 LINE L2 -2 3311 3182 205 377 26 13 chr13 35367926 35368080 -84376818 - L2 LINE L2 -231 3041 2886 1272 183 4 29 chr13 35368674 35368915 -84375983 + L1MB5 LINE L1 5932 6166 -8 754 239 68 108 chr13 35368918 35368950 -84375948 + L2 LINE L2 2695 2727 -586 369 0 0 0 chr13 35368950 35368991 -84375907 + (TG)n Simple_repeat Simple_repeat 2 42 0 754 239 68 108 chr13 35368991 35369342 -84375556 + L2 LINE L2 2727 3049 -264 2278 103 3 10 chr13 35369342 35369644 -84375254 - AluSg SINE Alu -10 300 1 754 239 68 108 chr13 35369644 35369734 -84375164 + L2 LINE L2 3049 3141 -172 441 0 0 0 chr13 35369751 35369800 -84375098 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr13 35369806 35369835 -84375063 + AT_rich Low_complexity Low_complexity 1 29 0 1503 184 0 22 chr13 35369835 35370107 -84374791 - L1MB5 LINE L1 -8 6166 5901 1780 188 9 21 chr13 35370145 35370485 -84374413 - L1MB5 LINE L1 -416 5758 5423 2423 70 6 16 chr13 35370486 35370800 -84374098 - AluSp SINE Alu -2 311 1 2448 93 39 25 chr13 35370800 35371156 -84373742 - MER41A LTR ERV1 -183 371 11 417 258 45 8 chr13 35371336 35371468 -84373430 + L1ME4a LINE L1 5805 5941 -180 543 268 102 38 chr13 35372370 35372566 -84372332 + L1MC4 LINE L1 7791 8006 -36 1499 136 45 0 chr13 35372566 35372786 -84372112 + MER30 DNA MER1_type 1 230 0 543 268 102 38 chr13 35372786 35372824 -84372074 + L1MC4 LINE L1 8006 8040 -2 32 26 0 0 chr13 35372824 35372863 -84372035 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 35372925 35372946 -84371952 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 35373727 35373752 -84371146 + (TA)n Simple_repeat Simple_repeat 1 25 0 819 227 50 80 chr13 35374076 35374113 -84370785 - MER20B DNA MER1_type -492 291 254 2274 96 0 13 chr13 35374113 35374414 -84370484 - AluSq SINE Alu -16 297 1 819 227 50 80 chr13 35374414 35374676 -84370222 - MER20B DNA MER1_type -529 254 1 288 91 0 0 chr13 35375009 35375053 -84369845 + (TG)n Simple_repeat Simple_repeat 1 44 0 2043 111 19 16 chr13 35375383 35375690 -84369208 - AluSx SINE Alu -4 308 1 1808 181 78 22 chr13 35377211 35377582 -84367316 + MSTD LTR MaLR 5 396 0 2076 109 0 0 chr13 35377739 35378040 -84366858 - AluSq SINE Alu 0 310 10 287 257 9 46 chr13 35378804 35378880 -84366018 - L1MEc LINE L1 -1750 4465 4393 1850 142 42 0 chr13 35378880 35379168 -84365730 - AluJo SINE Alu -12 300 1 287 257 9 46 chr13 35379168 35379200 -84365698 - L1MEc LINE L1 -1822 4393 4361 3946 213 80 28 chr13 35379220 35380239 -84364659 - L1MEc LINE L1 -1905 4310 3217 2197 127 3 3 chr13 35380239 35380547 -84364351 - AluSx SINE Alu -4 308 1 3946 213 80 28 chr13 35380547 35380724 -84364174 - L1MEc LINE L1 -2998 3217 3051 950 280 129 58 chr13 35380753 35381289 -84363609 - MER21B LTR ERV1 -149 714 141 2865 237 41 26 chr13 35381438 35382630 -84362268 - L1MEc LINE L1 -3168 3047 1878 5061 254 44 59 chr13 35382650 35384558 -84360340 - L1MEc LINE L1 -4483 1913 35 371 198 86 0 chr13 35384559 35384640 -84360258 + MER3 DNA MER1_type 122 209 0 1778 120 0 4 chr13 35385089 35385369 -84359529 + AluSx SINE Alu 36 314 0 1171 248 85 44 chr13 35385754 35386165 -84358733 - L2 LINE L2 0 3313 2886 343 174 163 0 chr13 35386904 35386996 -84357902 + L2 LINE L2 3197 3303 -10 21 0 0 0 chr13 35387055 35387076 -84357822 + AT_rich Low_complexity Low_complexity 1 21 0 462 318 43 43 chr13 35387498 35387778 -84357120 + L2 LINE L2 2871 3150 -163 224 255 43 96 chr13 35388238 35388332 -84356566 - MIR SINE MIR -115 147 59 2088 125 0 0 chr13 35388749 35389038 -84355860 - AluSx SINE Alu -23 289 1 258 241 161 93 chr13 35390394 35390717 -84354181 - L1ME4a LINE L1 -160 5961 5617 35 0 0 0 chr13 35390799 35390834 -84354064 + AT_rich Low_complexity Low_complexity 1 35 0 423 254 71 24 chr13 35391748 35391874 -84353024 - FLAM_C SINE Alu -1 132 1 314 279 0 0 chr13 35393328 35393396 -84351502 + L2 LINE L2 3205 3272 0 408 251 18 114 chr13 35393520 35393687 -84351211 + L2 LINE L2 2941 3091 -181 2950 176 26 20 chr13 35393763 35394308 -84350590 + Tigger7 DNA MER2_type 29 576 -1911 833 137 25 50 chr13 35394399 35394560 -84350338 + Tigger7 DNA MER2_type 2331 2487 0 250 300 25 0 chr13 35394560 35394640 -84350258 + L2 LINE L2 3191 3272 0 2128 174 14 22 chr13 35394927 35395295 -84349603 - MLT1A1 LTR MaLR 0 365 1 192 77 0 0 chr13 35395808 35395834 -84349064 + (TG)n Simple_repeat Simple_repeat 2 27 0 279 0 42 42 chr13 35395933 35395981 -84348917 + (TTTTTG)n Simple_repeat Simple_repeat 6 53 0 343 278 119 11 chr13 35396028 35396219 -84348679 + MIR3 SINE MIR 26 241 -21 342 45 0 0 chr13 35396952 35396996 -84347902 + (TG)n Simple_repeat Simple_repeat 2 45 0 313 314 111 20 chr13 35397130 35397346 -84347552 + MIR SINE MIR 11 241 -21 677 258 18 53 chr13 35397457 35397682 -84347216 - MIR SINE MIR -29 233 17 228 108 15 62 chr13 35397727 35397792 -84347106 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 273 79 0 0 chr13 35397820 35397858 -84347040 + AluY SINE Alu 45 82 -219 2870 225 62 27 chr13 35398612 35398714 -84346184 - L1ME1 LINE L1 -5 6161 6064 1716 218 88 6 chr13 35398714 35399076 -84345822 - MSTD LTR MaLR 0 396 5 2870 225 62 27 chr13 35399076 35400142 -84344756 - L1ME1 LINE L1 -102 6064 4963 2170 249 72 11 chr13 35400144 35400670 -84344228 - MLT1F1 LTR MaLR -8 559 2 383 212 24 12 chr13 35400671 35400756 -84344142 - L1ME1 LINE L1 -1177 4969 4884 274 333 59 20 chr13 35401348 35401450 -84343448 - L2 LINE L2 -14 3258 3153 503 279 20 7 chr13 35401789 35401936 -84342962 - MLT1F1 LTR MaLR -108 459 311 752 265 131 64 chr13 35402701 35403188 -84341710 - LTR67 LTR ERVL -9 548 29 543 266 76 19 chr13 35403348 35403506 -84341392 + MER5B DNA MER1_type 3 169 -9 1972 182 8 32 chr13 35404147 35404521 -84340377 - MLT1A1 LTR MaLR 0 365 1 756 230 19 0 chr13 35405409 35405570 -84339328 + L1PB4 LINE L1 5993 6156 0 207 204 0 0 chr13 35405755 35405799 -84339099 + (TG)n Simple_repeat Simple_repeat 2 45 0 276 286 36 0 chr13 35406052 35406136 -84338762 + MER5A DNA MER1_type 14 100 -89 397 270 58 29 chr13 35406190 35406327 -84338571 - MER5A DNA MER1_type -28 161 21 1262 122 33 0 chr13 35407176 35407356 -84337542 - MER5A DNA MER1_type -3 186 1 687 316 53 23 chr13 35407378 35407679 -84337219 + LTR16A LTR ERVL 22 331 -119 477 331 31 16 chr13 35408243 35408497 -84336401 - L2 LINE L2 -467 2847 2590 688 271 41 14 chr13 35408516 35408737 -84336161 + MIR SINE MIR 18 244 -18 2219 195 57 13 chr13 35410083 35410611 -84334287 - MER89 LTR ERV1 -5 554 4 263 273 16 91 chr13 35410786 35410907 -84333991 + MIR SINE MIR 128 239 -23 3996 146 20 14 chr13 35411146 35411879 -84333019 - L1MA8 LINE L1 -11 6280 5543 486 291 81 44 chr13 35414545 35414975 -84329923 + HAL1b LINE L1 70 515 -833 2757 267 49 43 chr13 35414985 35416160 -84328738 - L1MEc LINE L1 -4947 1449 263 1901 125 52 35 chr13 35416160 35416529 -84328369 + THE1C LTR MaLR 1 375 0 2757 267 49 43 chr13 35416529 35416714 -84328184 - L1MEc LINE L1 -6133 263 81 1257 228 138 50 chr13 35416756 35417480 -84327418 + HAL1b LINE L1 511 1298 -50 524 322 40 10 chr13 35417499 35417698 -84327200 - L2 LINE L2 -2 3311 3107 1511 243 14 22 chr13 35417698 35418192 -84326706 - L1M4 LINE L1 -1169 4977 4488 27 29 0 0 chr13 35418308 35418342 -84326556 + AT_rich Low_complexity Low_complexity 1 34 0 542 308 32 11 chr13 35418374 35418559 -84326339 - MER5A DNA MER1_type 0 189 1 425 351 49 0 chr13 35419221 35419406 -84325492 + MIR SINE MIR 1 194 -68 272 108 0 0 chr13 35421129 35421191 -84323707 + Alu SINE Alu 246 307 0 618 296 48 5 chr13 35423106 35423312 -84321586 - MIR SINE MIR -1 261 47 488 278 48 32 chr13 35425786 35425973 -84318925 + MIR SINE MIR 73 262 0 437 230 56 32 chr13 35426969 35427095 -84317803 - L2 LINE L2 -1 3312 3184 552 265 158 43 chr13 35427155 35427389 -84317509 + MIR SINE MIR 1 261 -1 252 0 0 0 chr13 35427582 35427610 -84317288 + (A)n Simple_repeat Simple_repeat 1 28 0 423 311 47 14 chr13 35428225 35428373 -84316525 - MIR3 SINE MIR -9 199 47 209 383 25 0 chr13 35428887 35428968 -84315930 + L2 LINE L2 3116 3198 -74 967 254 14 161 chr13 35428991 35429644 -84315254 - L2 LINE L2 -1791 1523 967 205 244 0 0 chr13 35430675 35430716 -84314182 + CT-rich Low_complexity Low_complexity 3 43 0 5049 121 5 16 chr13 35430858 35431508 -84313390 - L1PA16 LINE L1 -6 6160 5519 1617 208 14 14 chr13 35431508 35431802 -84313096 - AluJb SINE Alu -18 294 1 5049 121 5 16 chr13 35431802 35431987 -84312911 - L1PA16 LINE L1 -647 5519 5334 254 283 35 26 chr13 35431988 35432101 -84312797 + MIR SINE MIR 148 261 -1 1220 137 64 4 chr13 35433657 35433906 -84310992 + L1MA4 LINE L1 6031 6294 -6 1716 140 7 57 chr13 35433926 35434226 -84310672 + AluJb SINE Alu 9 293 -19 753 203 0 0 chr13 35434228 35434361 -84310537 + FLAM_C SINE Alu 1 133 0 3159 213 37 22 chr13 35434380 35435213 -84309685 - L1ME1 LINE L1 -24 6142 5297 299 241 0 37 chr13 35435299 35435407 -84309491 - L1ME1 LINE L1 -868 5278 5175 1042 172 0 0 chr13 35435423 35435586 -84309312 - AluJ SINE Alu -15 297 135 286 310 8 70 chr13 35435587 35435716 -84309182 - MIR3 SINE MIR -6 202 82 216 333 93 19 chr13 35436961 35437069 -84307829 - L2 LINE L2 -36 3236 3121 402 214 31 0 chr13 35437469 35437567 -84307331 - L1PA10 LINE L1 -105 6063 5963 1078 273 125 30 chr13 35437567 35438102 -84306796 - Charlie2 DNA MER1_type -2152 630 45 199 376 69 0 chr13 35438118 35438219 -84306679 - L3 LINE CR1 -72 1505 1398 2180 121 0 13 chr13 35438481 35438796 -84306102 - AluY SINE Alu 0 311 1 757 176 23 0 chr13 35438797 35438928 -84305970 - AluJ SINE Alu -168 144 11 483 310 60 25 chr13 35439127 35439411 -84305487 + MLT1I LTR MaLR 108 401 -8 324 329 12 33 chr13 35439419 35439601 -84305297 + L2 LINE L2 2799 2980 -333 263 242 93 46 chr13 35439736 35439863 -84305035 + L1ME1 LINE L1 929 1070 -5326 2153 116 3 7 chr13 35439863 35440157 -84304741 + AluSx SINE Alu 1 293 -19 263 242 93 46 chr13 35440157 35440223 -84304675 + L1ME1 LINE L1 1070 1131 -5265 * 3950 244 65 47 chr13 35440210 35441946 -84302952 + L1ME1 LINE L1 2642 4407 -1808 2234 147 38 20 chr13 35441945 35442378 -84302520 - L1M2 LINE L1 -698 5593 5169 * 207 0 0 0 chr13 35442378 35442401 -84302497 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2207 91 11 0 chr13 35442403 35442689 -84302209 - AluSp SINE Alu -24 289 1 2234 147 38 20 chr13 35442689 35442936 -84301962 - L1M2 LINE L1 -1122 5169 4895 2572 234 19 33 chr13 35442936 35443320 -84301578 + L1ME1 LINE L1 4956 5344 -891 2090 117 3 25 chr13 35443320 35443636 -84301262 - AluSx SINE Alu -3 309 1 2572 234 19 33 chr13 35443636 35444388 -84300510 + L1ME1 LINE L1 5344 6070 -165 379 307 18 9 chr13 35444406 35444520 -84300378 + L2 LINE L2 3197 3311 -2 357 215 234 6 chr13 35444544 35444702 -84300196 + MIR SINE MIR 7 200 -62 4957 198 38 33 chr13 35444737 35444932 -84299966 + L1MB5 LINE L1 3832 4025 -2149 1996 109 65 14 chr13 35444932 35445225 -84299673 + AluSx SINE Alu 1 308 -4 4957 198 38 33 chr13 35445225 35447350 -84297548 + L1MB5 LINE L1 4025 6168 -6 184 291 39 78 chr13 35448108 35448211 -84296687 + L2 LINE L2 3173 3271 -1 658 296 36 32 chr13 35449302 35449552 -84295346 + MIR SINE MIR 12 262 0 225 331 78 19 chr13 35450240 35450394 -84294504 + MIR SINE MIR 49 211 -51 1315 221 24 68 chr13 35451698 35452124 -84292774 - MLT2D LTR ERVL 0 414 8 2278 69 23 13 chr13 35453051 35453354 -84291544 - AluY SINE Alu -5 306 1 2771 211 44 32 chr13 35453371 35454099 -84290799 + L1ME1 LINE L1 5420 6156 -10 2937 233 59 11 chr13 35454121 35454920 -84289978 + L1ME3 LINE L1 5320 6156 -6 2085 146 0 0 chr13 35456132 35456427 -84288471 - AluSx SINE Alu -17 295 1 2112 279 126 13 chr13 35457166 35457883 -84287015 - L3 LINE CR1 -199 1378 581 2116 122 6 3 chr13 35457943 35458321 -84286577 + AluJo SINE Alu 1 379 0 252 317 83 28 chr13 35458431 35458576 -84286322 - L3 LINE CR1 -1080 497 345 1802 191 17 56 chr13 35458610 35459071 -84285827 + LTR47B LTR ERVL 1 443 0 516 280 74 4 chr13 35459090 35459261 -84285637 + MIR SINE MIR 28 206 -56 186 395 80 5 chr13 35459302 35459502 -84285396 - L3 LINE CR1 -1299 278 64 1771 248 68 20 chr13 35459924 35460670 -84284228 - HAL1b LINE L1 -498 850 69 315 0 0 0 chr13 35460977 35461012 -84283886 + (TG)n Simple_repeat Simple_repeat 2 36 0 1835 251 131 9 chr13 35462776 35463425 -84281473 + L2 LINE L2 1481 2208 -1106 2390 118 3 3 chr13 35463434 35463791 -84281107 - THE1B LTR MaLR -1 363 7 2423 277 117 28 chr13 35463993 35465404 -84279494 - HAL1 LINE L1 -698 1809 273 266 309 52 7 chr13 35465414 35465550 -84279348 - HAL1 LINE L1 -2353 154 13 207 0 0 0 chr13 35465687 35465710 -84279188 + (CA)n Simple_repeat Simple_repeat 1 23 0 351 286 76 65 chr13 35465803 35465870 -84279028 - L1M4 LINE L1 -1199 4947 4882 1651 160 22 60 chr13 35465870 35466188 -84278710 - AluJo SINE Alu -2 310 5 351 286 76 65 chr13 35466188 35466595 -84278303 - L1M4 LINE L1 -1264 4882 4468 319 205 13 0 chr13 35466597 35466675 -84278223 + MER116 DNA Mariner 2 80 0 314 275 68 36 chr13 35466886 35467359 -84277539 - L1MEd LINE L1 -2686 3854 3367 420 294 112 13 chr13 35467423 35467957 -84276941 - L1MEd LINE L1 -3290 3250 2664 631 220 3 0 chr13 35467973 35468117 -84276781 + MSTD LTR MaLR 2 148 -217 654 197 15 0 chr13 35468154 35468291 -84276607 + MSTD LTR MaLR 258 396 0 331 302 107 12 chr13 35468305 35468474 -84276424 - L1MEd LINE L1 -3919 2621 2437 307 329 88 52 chr13 35468445 35468760 -84276138 - L1MEd LINE L1 -1126 1775 1473 * 2218 120 7 0 chr13 35468760 35469060 -84275838 + AluSx SINE Alu 1 302 -10 307 329 88 52 chr13 35469060 35469330 -84275568 - L1MEd LINE L1 -1428 1473 1081 34 72 0 0 chr13 35469828 35469897 -84275001 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr13 35470182 35470203 -84274695 + AT_rich Low_complexity Low_complexity 1 21 0 2206 63 0 4 chr13 35470608 35470876 -84274022 - AluY SINE Alu -16 295 29 2498 227 71 65 chr13 35471243 35471586 -84273312 - L1MDa LINE L1 -2798 3742 3403 1691 174 6 32 chr13 35471586 35471902 -84272996 + AluJo SINE Alu 1 308 -4 2498 227 71 65 chr13 35471902 35472818 -84272080 - L1MDa LINE L1 -3137 3403 2483 1585 204 14 17 chr13 35472818 35473112 -84271786 - AluJo SINE Alu -19 293 1 2498 227 71 65 chr13 35473112 35473304 -84271594 - L1MDa LINE L1 -4057 2483 2294 677 168 27 27 chr13 35473350 35473499 -84271399 + L1ME LINE L1 5662 5810 -356 22 0 0 0 chr13 35473600 35473622 -84271276 + AT_rich Low_complexity Low_complexity 1 22 0 4113 156 19 56 chr13 35473974 35474576 -84270322 + MER54B LTR ERVL 1 567 -226 2045 144 36 30 chr13 35474576 35474938 -84269960 - THE1B LTR MaLR 0 364 1 4113 156 19 56 chr13 35474938 35475158 -84269740 + MER54B LTR ERVL 567 793 0 23 68 0 0 chr13 35475508 35475552 -84269346 + AT_rich Low_complexity Low_complexity 1 44 0 2240 166 27 64 chr13 35476193 35476606 -84268292 - MER74A LTR ERVL -26 532 142 1737 170 7 3 chr13 35476606 35476900 -84267998 + AluJo SINE Alu 11 305 -7 2240 166 27 64 chr13 35476900 35477034 -84267864 - MER74A LTR ERVL -416 142 5 4129 157 84 12 chr13 35478552 35479508 -84265390 + L1MA8 LINE L1 4643 5747 -544 2048 139 32 32 chr13 35479508 35479881 -84265017 - THE1C LTR MaLR -2 373 1 4129 157 84 12 chr13 35479881 35480362 -84264536 + L1MA8 LINE L1 5747 6192 -99 652 120 0 0 chr13 35480848 35480948 -84263950 - L1 LINE L1 -2160 3986 3887 754 253 6 0 chr13 35482532 35482702 -84262196 - MLT1D LTR MaLR -334 171 1 905 287 47 40 chr13 35483042 35483345 -84261553 + L1ME3A LINE L1 4995 5294 -876 1895 152 24 0 chr13 35483345 35483634 -84261264 - AluSx SINE Alu -16 296 1 905 287 47 40 chr13 35483634 35484159 -84260739 + L1ME3A LINE L1 5294 5828 -342 620 293 50 50 chr13 35485005 35485288 -84259610 - MLT1I LTR MaLR -18 391 109 242 209 0 0 chr13 35485559 35485602 -84259296 - MER5A DNA MER1_type -10 179 137 497 55 14 0 chr13 35485602 35485675 -84259223 + (TA)n Simple_repeat Simple_repeat 1 74 0 258 244 51 0 chr13 35485694 35485772 -84259126 - L1MC4 LINE L1 -1339 6703 6622 21 0 0 0 chr13 35486206 35486227 -84258671 + AT_rich Low_complexity Low_complexity 1 21 0 702 223 37 32 chr13 35486253 35486441 -84258457 - MER5A DNA MER1_type 0 189 1 199 282 113 14 chr13 35486680 35486751 -84258147 + L2 LINE L2 3235 3312 -1 3619 169 63 9 chr13 35487113 35487798 -84257100 - MER72 LTR ERV1 0 722 1 319 265 209 36 chr13 35488552 35488748 -84256150 - MIR SINE MIR -13 249 20 186 147 0 29 chr13 35489843 35489877 -84255021 + MER5C DNA MER1_type 33 65 -259 431 302 32 58 chr13 35489971 35490160 -84254738 + MIR SINE MIR 71 254 -8 8981 107 13 1 chr13 35491957 35493228 -84251670 - HSMAR1 DNA Mariner 0 1287 1 421 211 78 47 chr13 35493313 35493441 -84251457 - MIR SINE MIR -98 164 33 234 244 9 96 chr13 35493604 35493662 -84251236 + MER103 DNA DNA 3 48 -118 2097 116 0 30 chr13 35493662 35493965 -84250933 + AluSx SINE Alu 1 294 -18 234 244 9 96 chr13 35493965 35494021 -84250877 + MER103 DNA DNA 48 107 -59 2206 115 48 28 chr13 35494069 35494426 -84250472 + THE1B LTR MaLR 1 364 0 862 141 96 15 chr13 35495177 35495376 -84249522 - L1MC3 LINE L1 0 7785 7571 2006 96 4 8 chr13 35495640 35495901 -84248997 + AluY SINE Alu 1 260 -51 408 107 40 0 chr13 35495904 35495979 -84248919 - LTR54B LTR ERV1 -21 477 400 2018 156 125 13 chr13 35496039 35496424 -84248474 + MSTA LTR MaLR 1 428 0 239 140 20 0 chr13 35496429 35496479 -84248419 + CT-rich Low_complexity Low_complexity 2 52 0 1664 184 20 50 chr13 35497277 35497679 -84247219 - L1ME1 LINE L1 -333 5833 5444 474 146 85 12 chr13 35497925 35498007 -84246891 + AluJ/FLAM SINE Alu 3 90 -222 28 29 0 0 chr13 35498019 35498054 -84246844 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 35498092 35498115 -84246783 + AT_rich Low_complexity Low_complexity 1 23 0 214 337 20 20 chr13 35499254 35499352 -84245546 - MER5B DNA MER1_type -80 98 1 718 246 58 45 chr13 35499685 35499882 -84245016 - MIR SINE MIR -27 235 33 2339 92 0 0 chr13 35499882 35500177 -84244721 - AluSq SINE Alu -18 295 1 718 246 58 45 chr13 35500177 35500203 -84244695 - MIR SINE MIR -229 33 9 2211 121 21 9 chr13 35500370 35500709 -84244189 + MER61A LTR ERV1 1 343 0 654 176 183 20 chr13 35501346 35501499 -84243399 - MER5B DNA MER1_type 0 178 1 216 0 0 0 chr13 35501859 35501883 -84243015 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2027 102 11 4 chr13 35501885 35502160 -84242738 - AluSc SINE Alu -32 277 1 617 231 81 6 chr13 35502423 35502583 -84242315 + MIR SINE MIR 85 256 -6 243 401 38 38 chr13 35502796 35502928 -84241970 + L2 LINE L2 3121 3252 -20 4079 87 7 0 chr13 35503017 35503567 -84241331 + MER41A LTR ERV1 1 554 0 1048 153 16 26 chr13 35503980 35504169 -84240729 + MER5A DNA MER1_type 1 187 -2 270 257 66 93 chr13 35504257 35504413 -84240485 - MIR SINE MIR -28 180 37 708 177 8 0 chr13 35505270 35505394 -84239504 + MER5B DNA MER1_type 4 128 -50 348 203 53 88 chr13 35505394 35505673 -84239225 - MER34 LTR ERV1 -15 751 435 425 123 0 0 chr13 35505827 35505892 -84239006 - MER34C LTR ERV1 -484 101 37 1289 169 14 1 chr13 35505985 35506237 -84238661 - MER39 LTR ERV1 -55 640 385 244 190 114 51 chr13 35506281 35506360 -84238538 - LTR48B LTR ERV1 -560 84 1 1886 243 151 61 chr13 35506506 35507904 -84236994 + HAL1 LINE L1 94 1617 -890 2044 84 40 7 chr13 35507913 35508247 -84236651 + AluY SINE Alu 1 343 0 233 288 0 0 chr13 35508366 35508425 -84236473 + CT-rich Low_complexity Low_complexity 3 61 0 404 211 23 23 chr13 35508433 35508604 -84236294 + T-rich Low_complexity Low_complexity 3 173 0 33 56 0 0 chr13 35508647 35508701 -84236197 + AT_rich Low_complexity Low_complexity 1 54 0 1818 123 98 11 chr13 35508715 35508991 -84235907 - AluJo SINE Alu -12 300 1 347 263 63 86 chr13 35509011 35509186 -84235712 + HAL1 LINE L1 1673 1843 -664 614 196 60 114 chr13 35509236 35509588 -84235310 + HAL1 LINE L1 2169 2501 -6 393 340 181 16 chr13 35509714 35510510 -84234388 - L2 LINE L2 -181 3091 2128 1409 165 15 105 chr13 35510514 35510915 -84233983 + MLT1A1 LTR MaLR 1 365 0 190 318 56 37 chr13 35512072 35512179 -84232719 + MIR SINE MIR 84 192 -70 309 272 158 6 chr13 35512518 35512676 -84232222 - LTR33 LTR ERVL 0 521 340 2739 109 46 5 chr13 35512823 35513234 -84231664 - MSTA LTR MaLR 0 428 1 7188 163 121 8 chr13 35513234 35514653 -84230245 - MSTA-int LTR MaLR 0 1580 3 2289 130 50 38 chr13 35514655 35514722 -84230176 - MSTA LTR MaLR 0 428 363 2176 120 10 0 chr13 35514722 35515030 -84229868 + AluSx SINE Alu 1 311 -1 2289 130 50 38 chr13 35515030 35515385 -84229513 - MSTA LTR MaLR -65 363 1 1772 105 22 99 chr13 35515431 35515780 -84229118 - AluYb8 SINE Alu 0 325 1 401 200 73 113 chr13 35516098 35516248 -84228650 - LTR33 LTR ERVL -345 176 33 2343 68 3 65 chr13 35517078 35517402 -84227496 - AluSp SINE Alu -9 304 1 427 246 136 45 chr13 35518578 35518842 -84226056 + MLT1J LTR MaLR 224 511 0 808 234 45 37 chr13 35518859 35519103 -84225795 - MIR SINE MIR 0 262 17 314 202 158 53 chr13 35519760 35519874 -84225024 - L2 LINE L2 -9 3304 3179 * 534 318 69 50 chr13 35519849 35520311 -84224587 - L2 LINE L2 -395 2919 2449 224 292 139 22 chr13 35520407 35520544 -84224354 + MIR SINE MIR 60 212 -50 276 294 184 65 chr13 35521138 35521475 -84223423 - L2 LINE L2 -924 2390 2014 233 216 49 39 chr13 35521770 35521872 -84223026 + HAL1b LINE L1 1212 1314 -34 265 185 111 74 chr13 35522200 35522349 -84222549 - MIR3 SINE MIR -15 193 41 255 246 148 8 chr13 35522380 35522502 -84222396 + L3b LINE CR1 1107 1245 -338 201 226 19 38 chr13 35522867 35522920 -84221978 + L2 LINE L2 3213 3264 -8 194 357 133 36 chr13 35522923 35523119 -84221779 + L3b LINE CR1 1335 1549 -34 22 35 0 0 chr13 35524020 35524049 -84220849 + AT_rich Low_complexity Low_complexity 1 29 0 407 168 141 74 chr13 35524397 35524484 -84220414 + MER69 DNA AcHobo 2368 2471 -55 3258 122 33 15 chr13 35524484 35525002 -84219896 - MER1A DNA MER1_type 0 527 1 407 168 141 74 chr13 35525002 35525063 -84219835 + MER69 DNA AcHobo 2471 2526 0 1486 186 3 69 chr13 35525942 35526238 -84218660 + L1MB1 LINE L1 5811 6125 -96 2232 107 0 3 chr13 35526238 35526536 -84218362 + AluSg SINE Alu 1 297 -13 1486 186 3 69 chr13 35526536 35526571 -84218327 + L1MB1 LINE L1 6125 6161 -60 2345 94 0 0 chr13 35526571 35526868 -84218030 + AluY SINE Alu 1 297 -14 1486 186 3 69 chr13 35526868 35526971 -84217927 + L1MB1 LINE L1 6161 6221 0 255 103 0 0 chr13 35526980 35527019 -84217879 + (GGA)n Simple_repeat Simple_repeat 2 40 0 4282 192 69 33 chr13 35527207 35528285 -84216613 + Charlie1a DNA MER1_type 1 1117 -338 1057 203 53 9 chr13 35528285 35528512 -84216386 + MLT1F1 LTR MaLR 3 239 -328 977 201 5 34 chr13 35528682 35528886 -84216012 + MER58A DNA MER1_type 27 224 0 359 270 237 7 chr13 35529715 35529867 -84215031 - L2 LINE L2 -1 3312 3126 297 0 0 0 chr13 35529893 35529926 -84214972 + (CA)n Simple_repeat Simple_repeat 2 34 0 589 279 123 42 chr13 35530005 35530364 -84214534 + L1MEd LINE L1 573 960 -5456 304 261 34 17 chr13 35530368 35530487 -84214411 + L1MEd LINE L1 1015 1135 -5281 2425 172 34 4 chr13 35530500 35530976 -84213922 + L1MB3 LINE L1 5616 6105 -78 1695 106 26 0 chr13 35530988 35531252 -84213646 - L1MA6 LINE L1 0 6300 6030 520 133 56 0 chr13 35531252 35531342 -84213556 + L1MA6 LINE L1 5840 5934 -366 468 119 36 0 chr13 35531343 35531427 -84213471 + L1MB3 LINE L1 6095 6181 -2 6712 61 6 16 chr13 35531431 35532951 -84211947 - L1PA7 LINE L1 -3 6151 4635 416 206 38 8 chr13 35533054 35533185 -84211713 + L1MEd LINE L1 1201 1335 -5081 397 343 41 6 chr13 35533237 35533406 -84211492 + HAL1 LINE L1 1425 1599 -908 342 45 0 0 chr13 35533407 35533451 -84211447 + (CA)n Simple_repeat Simple_repeat 2 45 0 2104 184 52 7 chr13 35533544 35533989 -84210909 - MLT1C LTR MaLR 0 467 3 24 32 0 0 chr13 35534135 35534166 -84210732 + AT_rich Low_complexity Low_complexity 1 31 0 323 278 142 21 chr13 35534418 35535099 -84209799 + L1MEd LINE L1 2390 3162 -3264 1536 194 25 68 chr13 35535185 35535263 -84209635 + L1MDa LINE L1 18 98 -6442 2066 126 3 0 chr13 35535263 35535549 -84209349 + AluSp SINE Alu 5 291 -22 1536 194 25 68 chr13 35535549 35535868 -84209030 + L1MDa LINE L1 98 398 -6142 2613 310 94 60 chr13 35535975 35537896 -84207002 - L2 LINE L2 -215 3057 1038 3940 203 64 85 chr13 35537900 35539133 -84205765 - Charlie2a DNA MER1_type -2 2860 1603 1483 100 76 0 chr13 35539133 35539382 -84205516 - L1MA2 LINE L1 -3 6301 6034 573 161 0 0 chr13 35539382 35539471 -84205427 - L1MD1 LINE L1 -8 6234 6142 3940 203 64 85 chr13 35539471 35539494 -84205404 - Charlie2a DNA MER1_type -1258 1604 1582 2007 132 0 33 chr13 35539494 35539797 -84205101 - AluSx SINE Alu -19 293 1 3940 203 64 85 chr13 35539797 35540314 -84204584 - Charlie2a DNA MER1_type -1280 1582 1122 779 37 148 0 chr13 35540388 35540496 -84204402 - L1PA13 LINE L1 -4 6159 6036 539 229 72 44 chr13 35540497 35540877 -84204021 - Charlie2a DNA MER1_type -1744 1118 689 2575 164 55 25 chr13 35540879 35541447 -84203451 + L1MC3 LINE L1 7201 7785 0 1062 286 152 32 chr13 35541450 35542076 -84202822 - Charlie2a DNA MER1_type -2161 701 1 270 308 44 13 chr13 35542077 35542236 -84202662 - L2 LINE L2 -2273 1041 878 380 236 11 11 chr13 35542403 35542492 -84202406 + L2 LINE L2 3224 3312 -1 1939 156 3 0 chr13 35544073 35544374 -84200524 + AluJo SINE Alu 1 302 -10 287 165 12 106 chr13 35545677 35545762 -84199136 - LTR67 LTR ERVL -4 553 477 474 317 53 44 chr13 35546079 35546130 -84198768 - MIR SINE MIR -6 256 207 192 77 0 0 chr13 35546130 35546156 -84198742 + (TG)n Simple_repeat Simple_repeat 1 26 0 474 317 53 44 chr13 35546156 35546331 -84198567 - MIR SINE MIR -55 207 28 2228 117 49 9 chr13 35546607 35546957 -84197941 + THE1B LTR MaLR 1 364 0 1031 204 136 52 chr13 35547277 35547569 -84197329 + MLT1C LTR MaLR 1 342 -125 3805 169 20 49 chr13 35547569 35548324 -84196574 + MER44D DNA MER2_type 1 605 0 1031 204 136 52 chr13 35548324 35548457 -84196441 + MLT1C LTR MaLR 342 462 -5 2090 119 0 0 chr13 35548877 35549154 -84195744 + AluSx SINE Alu 1 277 -35 259 366 30 8 chr13 35550126 35550260 -84194638 - MIR3 SINE MIR -10 198 62 212 137 0 137 chr13 35553523 35553574 -84191324 + L2 LINE L2 3265 3308 -5 560 268 73 97 chr13 35555084 35555391 -84189507 - L1ME4a LINE L1 -2 6119 5806 1459 69 35 5 chr13 35555391 35555594 -84189304 + L1PA10 LINE L1 5956 6164 -4 450 0 0 0 chr13 35555596 35555646 -84189252 + (TA)n Simple_repeat Simple_repeat 1 50 0 560 268 73 97 chr13 35555646 35555831 -84189067 - L1ME4a LINE L1 -316 5805 5636 503 157 12 0 chr13 35556117 35556200 -84188698 + Tigger4(Zombi) DNA MER2_type 1 84 -2647 * 3040 91 29 78 chr13 35556197 35556347 -84188551 + Tigger4(Zombi) DNA MER2_type 2169 2325 -406 2198 116 3 7 chr13 35556347 35556657 -84188241 - AluSx SINE Alu -3 309 1 3040 91 29 78 chr13 35556657 35557098 -84187800 + Tigger4(Zombi) DNA MER2_type 2325 2731 0 744 103 8 0 chr13 35557698 35557815 -84187083 - AluSc SINE Alu -6 303 186 223 292 139 0 chr13 35558072 35558144 -84186754 + MER5C DNA MER1_type 2 83 -241 959 150 0 0 chr13 35559834 35559981 -84184917 - AluSg/x SINE Alu 0 310 164 980 245 56 43 chr13 35560437 35560812 -84184086 - MLT1I LTR MaLR -25 384 5 354 255 29 128 chr13 35560850 35560970 -84183928 + MIR SINE MIR 5 93 -159 2069 105 11 0 chr13 35560970 35561256 -84183642 + AluSx SINE Alu 5 293 -19 354 255 29 128 chr13 35561256 35561361 -84183537 + MIR SINE MIR 93 207 -45 22 0 0 0 chr13 35561829 35561851 -84183047 + AT_rich Low_complexity Low_complexity 1 22 0 1078 206 76 79 chr13 35563405 35563774 -84181124 - L1MC4 LINE L1 -30 8012 7645 186 43 0 0 chr13 35564695 35564718 -84180180 + (CA)n Simple_repeat Simple_repeat 2 24 0 2119 130 3 0 chr13 35565171 35565464 -84179434 - AluJb SINE Alu -18 294 1 2145 103 4 0 chr13 35566177 35566492 -84178406 + AluSx SINE Alu 3 318 0 26 0 0 0 chr13 35566769 35566795 -84178103 + AT_rich Low_complexity Low_complexity 1 26 0 385 326 22 22 chr13 35569776 35569914 -84174984 + MIR SINE MIR 46 183 -79 198 329 56 35 chr13 35570049 35570192 -84174706 + MIR3 SINE MIR 58 203 -5 186 133 0 0 chr13 35570326 35570356 -84174542 + (TTC)n Simple_repeat Simple_repeat 1 30 0 401 258 48 24 chr13 35571086 35571210 -84173688 - MIR SINE MIR -65 143 17 357 174 0 0 chr13 35574212 35574281 -84170617 + (TA)n Simple_repeat Simple_repeat 2 70 0 180 0 0 0 chr13 35574548 35574568 -84170330 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 228 205 181 60 chr13 35575076 35575159 -84169739 + MER5A DNA MER1_type 73 165 -24 229 250 0 0 chr13 35575994 35576054 -84168844 + (CA)n Simple_repeat Simple_repeat 2 61 0 1530 72 0 0 chr13 35576417 35576610 -84168288 - L1PA10 LINE L1 -244 5924 5732 478 94 0 0 chr13 35576610 35576674 -84168224 + L1PA10 LINE L1 6101 6164 -4 529 289 154 43 chr13 35576706 35577211 -84167687 - L2 LINE L2 -72 3241 2653 255 177 0 0 chr13 35577378 35577440 -84167458 + CT-rich Low_complexity Low_complexity 2 63 0 270 81 0 0 chr13 35577440 35577477 -84167421 + (CA)n Simple_repeat Simple_repeat 1 37 0 2333 112 92 6 chr13 35577953 35578300 -84166598 - MER51B LTR ERV1 0 377 1 8243 152 38 17 chr13 35578302 35580326 -84164572 - MER51B-int LTR ERV1 -1 7815 5758 1928 87 70 4 chr13 35580331 35580683 -84164215 - MER51-int LTR ERV1 -2577 2640 2221 * 2529 139 136 4 chr13 35580671 35581159 -84163739 - MER51-int LTR ERV1 -2602 3344 2820 804 146 238 0 chr13 35581131 35581282 -84163616 - MER51-int LTR ERV1 -4489 3327 3141 * 713 45 67 0 chr13 35581282 35581371 -84163527 - MER51B LTR ERV1 -282 95 1 479 270 189 18 chr13 35582430 35582652 -84162246 - MIR SINE MIR 0 262 3 725 286 57 21 chr13 35583046 35583329 -84161569 - L2 LINE L2 -1 3312 3020 188 294 73 0 chr13 35583866 35583934 -84160964 - L2 LINE L2 -343 2971 2899 949 26 0 9 chr13 35584403 35584516 -84160382 - L1PA4 LINE L1 -3 6152 6041 227 372 22 15 chr13 35584616 35584753 -84160145 + L2 LINE L2 2709 2846 -468 200 219 141 133 chr13 35585144 35585272 -84159626 + L2 LINE L2 2929 3057 -215 432 258 58 58 chr13 35585543 35585670 -84159228 - HAL1b LINE L1 -806 542 416 1874 153 0 23 chr13 35585670 35585971 -84158927 + AluJo SINE Alu 1 294 -18 432 258 58 58 chr13 35585971 35586103 -84158795 - HAL1b LINE L1 -931 417 283 1042 209 134 28 chr13 35586252 35586518 -84158380 + MLT1F LTR MaLR 1 237 -305 1053 209 47 14 chr13 35586518 35586733 -84158165 + MER58A DNA MER1_type 1 222 -2 1042 209 134 28 chr13 35586733 35586744 -84158154 + MLT1F LTR MaLR 237 245 -297 2328 96 0 3 chr13 35586744 35587046 -84157852 - AluSx SINE Alu -11 301 1 1042 209 134 28 chr13 35587046 35587202 -84157696 + MLT1F LTR MaLR 245 541 -1 1779 230 117 10 chr13 35587203 35587708 -84157190 - MLT2F LTR ERVL -74 589 31 354 291 56 46 chr13 35587924 35588209 -84156689 - L1MEc LINE L1 -4819 1577 1290 347 212 12 0 chr13 35588350 35588435 -84156463 + CT-rich Low_complexity Low_complexity 3 88 0 540 306 129 9 chr13 35588957 35589189 -84155709 + MIR SINE MIR 3 262 0 1488 156 83 60 chr13 35589319 35589633 -84155265 + MSTB LTR MaLR 1 321 -105 3935 192 1 10 chr13 35589638 35590350 -84154548 + MST-int LTR MaLR 540 1245 -406 478 191 118 7 chr13 35590350 35590486 -84154412 + MSTB LTR MaLR 278 428 0 2105 100 0 0 chr13 35591338 35591609 -84153289 - L1PA11 LINE L1 -2 6172 5902 3962 217 24 26 chr13 35591615 35592793 -84152105 - L1PA12 LINE L1 -4903 2681 728 2058 122 13 23 chr13 35593675 35593978 -84150920 + AluJb SINE Alu 11 310 -2 2135 134 0 0 chr13 35594465 35594763 -84150135 - AluSq SINE Alu -15 298 1 2650 142 40 19 chr13 35594850 35595274 -84149624 + Tigger2a DNA MER2_type 2 434 0 2260 101 0 0 chr13 35595671 35595959 -84148939 + AluSx SINE Alu 11 298 -14 694 264 130 13 chr13 35596240 35596471 -84148427 + MIR SINE MIR 2 259 -3 723 172 52 0 chr13 35596795 35596911 -84147987 + FLAM_A SINE Alu 1 122 -11 2057 111 30 7 chr13 35597103 35597400 -84147498 + AluSg SINE Alu 1 304 -6 1838 157 3 7 chr13 35597810 35598104 -84146794 - AluJo SINE Alu -19 293 1 1015 161 0 28 chr13 35598240 35598420 -84146478 - FRAM SINE Alu -2 174 1 366 309 173 0 chr13 35598570 35598738 -84146160 - MIR SINE MIR -34 228 32 2154 119 0 7 chr13 35599406 35599708 -84145190 - AluSx SINE Alu -8 304 5 28 0 0 0 chr13 35601288 35601316 -84143582 + AT_rich Low_complexity Low_complexity 1 28 0 483 243 50 31 chr13 35601337 35601557 -84143341 - L1MC5 LINE L1 -519 7493 7237 2153 177 8 11 chr13 35601718 35602080 -84142818 - MLT1A1 LTR MaLR -4 361 1 639 110 0 0 chr13 35602444 35602526 -84142372 - 5S rRNA rRNA -33 88 7 2402 95 45 31 chr13 35602809 35603166 -84141732 - THE1B LTR MaLR -2 362 1 2495 174 42 43 chr13 35603282 35603633 -84141265 - MER63C DNA MER1_type -223 837 486 2134 128 7 0 chr13 35603633 35603937 -84140961 + AluSg SINE Alu 1 306 -4 2495 174 42 43 chr13 35603937 35604164 -84140734 - MER63C DNA MER1_type -574 486 260 3423 107 11 0 chr13 35604300 35604759 -84140139 - L1PA11 LINE L1 -2 6172 5709 2440 91 0 0 chr13 35604765 35605073 -84139825 - AluSq SINE Alu -5 308 1 370 198 12 0 chr13 35605168 35605249 -84139649 - MER63C DNA MER1_type -757 173 92 237 267 99 30 chr13 35605266 35605367 -84139531 + MER34 LTR ERV1 22 129 -413 374 302 77 28 chr13 35605611 35605793 -84139105 + MER34 LTR ERV1 345 535 -7 827 215 46 38 chr13 35605929 35605947 -84138951 - L1MB8 LINE L1 -12 6166 6150 1427 204 123 17 chr13 35605947 35606305 -84138593 + MSTD LTR MaLR 1 396 0 827 215 46 38 chr13 35606305 35606523 -84138375 - L1MB8 LINE L1 -28 6150 5928 2623 150 2 7 chr13 35606524 35606951 -84137947 - MER50 LTR ERV1 -23 711 287 1093 151 75 15 chr13 35607110 35607309 -84137589 - MER50 LTR ERV1 -523 211 1 957 204 73 0 chr13 35607310 35607516 -84137382 - L1ME1 LINE L1 -239 5927 5707 208 186 47 0 chr13 35607537 35607580 -84137318 + L2 LINE L2 3263 3307 -6 778 254 92 66 chr13 35607707 35608217 -84136681 - LTR48B LTR ERV1 -12 772 3 185 268 0 0 chr13 35608217 35608258 -84136640 + MIR3 SINE MIR 140 180 -28 558 190 0 10 chr13 35608306 35608406 -84136492 - MER5B DNA MER1_type -79 99 1 2026 117 30 10 chr13 35608786 35609084 -84135814 - AluSc SINE Alu -5 304 1 722 308 82 41 chr13 35609403 35609890 -84135008 + LTR33 LTR ERVL 15 521 0 33 0 0 0 chr13 35610697 35610730 -84134168 + AT_rich Low_complexity Low_complexity 1 33 0 487 222 10 0 chr13 35611307 35611406 -84133492 - MER69 DNA AcHobo -572 654 555 1097 164 6 0 chr13 35611416 35611599 -84133299 - AluJb SINE Alu 0 312 129 1905 127 0 0 chr13 35611612 35611872 -84133026 - AluSx SINE Alu -52 260 1 2171 218 23 7 chr13 35612019 35612459 -84132439 + MER39 LTR ERV1 261 707 0 1264 99 11 22 chr13 35612872 35613053 -84131845 - AluSq SINE Alu -14 299 121 1593 188 138 21 chr13 35613548 35613984 -84130914 + LTR54B LTR ERV1 10 496 -2 2030 149 0 0 chr13 35615395 35615691 -84129207 + AluJb SINE Alu 7 302 -10 2418 165 103 9 chr13 35616473 35616909 -84127989 - MER61D LTR ERV1 0 501 25 283 213 0 0 chr13 35616876 35616937 -84127961 - LTR28 LTR ERV1 -959 61 1 * 359 216 105 70 chr13 35617261 35617432 -84127466 - MLT1H1 LTR MaLR -33 522 346 1328 180 51 38 chr13 35617455 35617807 -84127091 + MER58B DNA MER1_type 11 340 -1 2135 112 6 59 chr13 35617836 35618158 -84126740 - AluSq SINE Alu -8 305 1 231 271 108 36 chr13 35618166 35618332 -84126566 - MLT1H1 LTR MaLR -261 288 111 687 206 52 7 chr13 35618560 35618715 -84126183 - LTR1B LTR ERV1 0 826 665 1257 264 46 78 chr13 35619525 35620089 -84124809 + MLT1H LTR MaLR 4 549 0 303 203 81 0 chr13 35620096 35620170 -84124728 - MLT1F LTR MaLR -7 535 456 553 264 126 0 chr13 35620219 35620386 -84124512 + MLT1G1 LTR MaLR 1 188 -407 1921 142 0 0 chr13 35620605 35620873 -84124025 + AluSx SINE Alu 29 296 -16 853 251 100 26 chr13 35620956 35621267 -84123631 + L1ME3A LINE L1 5824 6157 -13 873 244 112 42 chr13 35621294 35621606 -84123292 + MLT1J LTR MaLR 101 434 -77 2112 113 3 42 chr13 35622546 35622856 -84122042 + AluSx SINE Alu 6 303 -9 298 343 164 0 chr13 35623126 35623272 -84121626 - MIR SINE MIR -61 201 32 384 306 89 17 chr13 35623459 35623639 -84121259 - MIR SINE MIR -50 212 20 2122 120 10 0 chr13 35623692 35623984 -84120914 - AluSx SINE Alu -17 295 1 220 347 40 84 chr13 35625061 35625335 -84119563 + L2 LINE L2 256 517 -2797 2307 123 37 35 chr13 35625789 35626163 -84118735 + THE1C LTR MaLR 1 375 0 408 345 62 23 chr13 35626284 35626542 -84118356 + L2 LINE L2 2225 2492 -822 798 118 178 0 chr13 35627662 35627797 -84117101 - MSTA LTR MaLR -269 159 1 2341 110 3 0 chr13 35628326 35628636 -84116262 + AluSq SINE Alu 1 311 -2 2284 98 19 10 chr13 35629230 35629537 -84115361 - AluSx SINE Alu -2 310 1 4581 248 108 98 chr13 35629679 35629879 -84115019 + L1MD1 LINE L1 3 200 -6340 260 19 75 19 chr13 35629879 35629932 -84114966 + (TTTG)n Simple_repeat Simple_repeat 4 59 0 4581 248 108 98 chr13 35629932 35631754 -84113144 + L1MD1 LINE L1 200 2045 -4495 2433 177 85 20 chr13 35633509 35633917 -84110981 + L1MD1 LINE L1 2030 2410 -4130 1729 174 7 23 chr13 35633917 35634227 -84110671 + AluJo SINE Alu 1 305 -7 2433 177 85 20 chr13 35634227 35634686 -84110212 + L1MD1 LINE L1 2410 2956 -3584 * 4165 210 53 28 chr13 35634682 35635404 -84109494 + L1MD1 LINE L1 3919 4726 -1814 2150 106 38 0 chr13 35635404 35635697 -84109201 + AluSp SINE Alu 1 304 -9 4165 210 53 28 chr13 35635697 35636206 -84108692 + L1MD1 LINE L1 4726 5221 -1319 770 250 12 19 chr13 35636206 35636366 -84108532 - AluJo SINE Alu -151 161 3 4998 184 37 19 chr13 35636369 35637687 -84107211 + L1MD1 LINE L1 5243 6593 -43 1812 181 41 9 chr13 35637695 35638038 -84106860 - MLT1A1 LTR MaLR -10 355 2 1820 159 0 28 chr13 35638077 35638398 -84106500 - AluJb SINE Alu 0 312 1 209 229 0 21 chr13 35638451 35638499 -84106399 + (CTA)n Simple_repeat Simple_repeat 2 48 0 2281 109 0 3 chr13 35638720 35639031 -84105867 + AluSx SINE Alu 1 310 -2 722 169 184 0 chr13 35639813 35639949 -84104949 + AluSp SINE Alu 137 297 -16 2475 66 0 13 chr13 35640007 35640312 -84104586 + AluY SINE Alu 1 301 -10 1636 106 23 26 chr13 35640375 35640640 -84104258 - L1MA8 LINE L1 -6 6285 6022 1957 130 33 10 chr13 35640645 35640946 -84103952 - AluJb SINE Alu -4 308 1 3467 89 5 5 chr13 35641008 35641457 -84103441 + L1PA10 LINE L1 5717 6165 -3 34 42 0 0 chr13 35642100 35642148 -84102750 + AT_rich Low_complexity Low_complexity 1 48 0 285 29 0 0 chr13 35642338 35642372 -84102526 + (CA)n Simple_repeat Simple_repeat 2 35 0 436 340 81 20 chr13 35642508 35642805 -84102093 - L2 LINE L2 -1 3312 2998 4481 165 33 16 chr13 35643024 35644029 -84100869 + L1MB2 LINE L1 5096 6119 -52 2207 95 0 3 chr13 35644176 35644470 -84100428 - AluY SINE Alu -18 293 1 1914 127 0 4 chr13 35645566 35645834 -84099064 + AluSx SINE Alu 1 267 -45 391 237 178 0 chr13 35645847 35645965 -84098933 + Charlie8 DNA MER1_type 97 235 -2182 616 173 168 35 chr13 35646021 35646194 -84098704 - L2 LINE L2 -1 3312 3117 282 325 126 7 chr13 35646361 35646512 -84098386 + L2 LINE L2 2507 2675 -639 187 319 80 0 chr13 35646661 35646774 -84098124 + MIR SINE MIR 105 226 -36 332 288 120 0 chr13 35646991 35647116 -84097782 + MER91A DNA MER1_type 5 144 -52 182 298 170 29 chr13 35647202 35647373 -84097525 + L2 LINE L2 3076 3270 -2 23 33 0 0 chr13 35647601 35647631 -84097267 + AT_rich Low_complexity Low_complexity 1 30 0 30 93 0 0 chr13 35650911 35650997 -84093901 + GC_rich Low_complexity Low_complexity 1 86 0 366 134 0 0 chr13 35651085 35651152 -84093746 + (CCG)n Simple_repeat Simple_repeat 1 67 0 2364 144 79 36 chr13 35651602 35652045 -84092853 + LTR26 LTR ERV1 142 603 0 253 337 0 0 chr13 35652102 35652191 -84092707 + L2 LINE L2 1871 1959 -1355 242 319 54 49 chr13 35652572 35652674 -84092224 + L2 LINE L2 1798 1903 -1411 1475 201 30 24 chr13 35652674 35652972 -84091926 - AluJo SINE Alu -12 300 1 242 319 54 49 chr13 35652972 35653054 -84091844 + L2 LINE L2 1903 1983 -1331 1970 181 117 49 chr13 35653769 35654238 -84090660 + MLT1D LTR MaLR 5 505 0 2002 112 4 14 chr13 35656016 35656292 -84088606 + AluSx SINE Alu 17 289 -23 5444 135 22 31 chr13 35656437 35656487 -84088411 + MER4D LTR ERV1 6 55 -848 3465 143 72 21 chr13 35656487 35657069 -84087829 + LTR9 LTR ERV1 1 612 0 5444 135 22 31 chr13 35657069 35657211 -84087687 + MER4D LTR ERV1 55 197 -706 2393 94 0 3 chr13 35657211 35657518 -84087380 + AluSx SINE Alu 1 306 -6 5444 135 22 31 chr13 35657518 35658230 -84086668 + MER4D LTR ERV1 197 903 0 2039 136 7 19 chr13 35659173 35659482 -84085416 - AluSx SINE Alu -7 305 1 396 307 22 7 chr13 35659684 35659821 -84085077 - L2 LINE L2 0 3313 3175 210 329 82 0 chr13 35660751 35660824 -84084074 - MIR SINE MIR -103 105 27 1799 255 77 8 chr13 35660967 35661552 -84083346 - Charlie7 DNA MER1_type -511 2101 1477 1940 143 0 0 chr13 35661555 35661835 -84083063 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr13 35661835 35661859 -84083039 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 321 232 11 0 chr13 35661873 35661968 -84082930 - L1MA4 LINE L1 -5 6295 6200 2111 321 62 27 chr13 35662080 35663266 -84081632 - ERVL LTR ERVL -394 5370 4143 608 236 111 42 chr13 35663641 35663857 -84081041 + LTR16B LTR ERVL 107 337 -127 681 335 126 47 chr13 35664134 35665143 -84079755 - L2 LINE L2 -618 2696 1608 219 69 0 0 chr13 35665205 35665234 -84079664 + (GA)n Simple_repeat Simple_repeat 1 29 0 1333 112 5 5 chr13 35665443 35665640 -84079258 + L1PA6 LINE L1 5958 6154 0 360 256 101 36 chr13 35666690 35666858 -84078040 + L1MEc LINE L1 1550 1696 -4846 347 256 11 33 chr13 35666952 35667042 -84077856 - MER5A DNA MER1_type -51 138 51 270 320 56 34 chr13 35667082 35667316 -84077582 + HAL1 LINE L1 1500 1738 -769 422 316 55 20 chr13 35667646 35667899 -84076999 + L1MEc LINE L1 2561 2822 -4003 1351 224 32 55 chr13 35667908 35668341 -84076557 - MLT1C LTR MaLR 0 467 45 2348 235 40 59 chr13 35668359 35669104 -84075794 - MLT1C-int LTR MaLR -4 1367 637 251 321 61 16 chr13 35669127 35669373 -84075525 + L1MEc LINE L1 2951 3207 -3437 815 294 88 26 chr13 35669402 35670232 -84074666 + L1MEc LINE L1 3873 4753 -1891 * 5671 142 14 7 chr13 35670227 35671966 -84072932 + L1PA13 LINE L1 4386 6129 -34 899 97 8 0 chr13 35674229 35674363 -84070535 + LTR47A LTR ERVL 4 138 -314 1239 137 33 0 chr13 35674398 35674610 -84070288 + LTR47A LTR ERVL 234 452 0 2249 110 3 0 chr13 35675151 35675451 -84069447 + AluSx SINE Alu 1 301 -11 1760 179 140 11 chr13 35675829 35676208 -84068690 - MSTA LTR MaLR 0 428 1 232 368 99 18 chr13 35680101 35680272 -84064626 + L2 LINE L2 609 793 -2521 1508 175 107 0 chr13 35681235 35681561 -84063337 - MER46B DNA MER2_type 0 236 1 342 0 0 0 chr13 35682029 35682067 -84062831 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 29 0 0 chr13 35682881 35682915 -84061983 + AT_rich Low_complexity Low_complexity 1 34 0 201 271 14 0 chr13 35682918 35682988 -84061910 + (TA)n Simple_repeat Simple_repeat 1 71 0 1267 188 73 23 chr13 35683735 35684088 -84060810 + MLT1A2 LTR MaLR 1 503 -2 361 266 31 88 chr13 35684433 35684562 -84060336 + MIR SINE MIR 15 131 -131 2516 109 61 24 chr13 35684562 35684601 -84060297 - MSTB LTR MaLR 0 426 390 2616 55 0 0 chr13 35684601 35684909 -84059989 + AluY SINE Alu 1 308 -3 2516 109 61 24 chr13 35684909 35685280 -84059618 - MSTB LTR MaLR -36 390 1 361 266 31 88 chr13 35685280 35685342 -84059556 + MIR SINE MIR 131 195 -67 818 191 20 80 chr13 35685345 35685544 -84059354 - MER5A DNA MER1_type 0 189 3 1094 190 54 54 chr13 35685756 35686087 -84058811 - MER33 DNA MER1_type -6 318 1 329 180 0 0 chr13 35687016 35687077 -84057821 - MER116 DNA Mariner -5 75 15 224 216 0 0 chr13 35687232 35687269 -84057629 + MER5B DNA MER1_type 3 39 -139 234 245 0 0 chr13 35687310 35687363 -84057535 + MLT1E LTR MaLR 111 163 -430 775 264 79 54 chr13 35687427 35687707 -84057191 + MLT1E LTR MaLR 368 593 0 463 240 101 0 chr13 35687708 35687837 -84057061 + MER5B DNA MER1_type 37 178 0 518 295 62 43 chr13 35687841 35688051 -84056847 + MIR SINE MIR 35 248 -14 254 157 43 57 chr13 35688108 35688178 -84056720 - MLT1B LTR MaLR -2 388 320 240 35 0 0 chr13 35688298 35688327 -84056571 + (GGGTG)n Simple_repeat Simple_repeat 4 32 0 23 0 0 0 chr13 35688394 35688417 -84056481 + GC_rich Low_complexity Low_complexity 1 23 0 230 270 0 0 chr13 35688442 35688505 -84056393 + G-rich Low_complexity Low_complexity 5 67 0 21 36 0 0 chr13 35689972 35690000 -84054898 + AT_rich Low_complexity Low_complexity 1 28 0 199 297 88 33 chr13 35691476 35691567 -84053331 + L2 LINE L2 3200 3295 -18 180 77 0 0 chr13 35692582 35692608 -84052290 + (TC)n Simple_repeat Simple_repeat 1 26 0 2492 68 0 0 chr13 35693601 35693909 -84050989 - AluY SINE Alu -3 308 1 219 249 6 152 chr13 35694729 35694894 -84050004 - L2 LINE L2 -4 3309 3169 1177 182 162 3 chr13 35694966 35695263 -84049635 - MER2 DNA MER2_type 0 344 1 2317 108 3 0 chr13 35696139 35696445 -84048453 + AluSp SINE Alu 1 307 -6 21 0 0 0 chr13 35696604 35696625 -84048273 + AT_rich Low_complexity Low_complexity 1 21 0 1741 162 0 14 chr13 35696837 35697127 -84047771 + AluJb SINE Alu 1 286 -26 208 182 91 0 chr13 35697186 35697230 -84047668 - L2 LINE L2 -1 3312 3265 730 180 0 0 chr13 35697698 35697837 -84047061 - L1MC1 LINE L1 -207 6126 5988 2510 50 0 7 chr13 35697928 35698231 -84046667 - AluY SINE Alu -10 301 1 207 128 77 0 chr13 35698389 35698428 -84046470 - MIR SINE MIR -98 164 123 3794 170 37 40 chr13 35700408 35700455 -84044443 - L1MB4 LINE L1 -3 6177 6131 1522 152 33 43 chr13 35700455 35700758 -84044140 - AluJo SINE Alu -12 300 1 3794 170 37 40 chr13 35700758 35701629 -84043269 - L1MB4 LINE L1 -49 6131 5262 518 146 122 65 chr13 35702176 35702299 -84042599 + FLAM_C SINE Alu 3 132 -11 1559 163 3 62 chr13 35702484 35702791 -84042107 - AluJo SINE Alu -23 289 1 945 204 41 0 chr13 35703029 35703225 -84041673 - MER20 DNA MER1_type -1 218 15 216 222 37 56 chr13 35703336 35703390 -84041508 - L2 LINE L2 -10 3303 3251 27 0 0 0 chr13 35704271 35704298 -84040600 + AT_rich Low_complexity Low_complexity 1 27 0 2223 112 0 6 chr13 35704840 35705152 -84039746 + AluSg SINE Alu 1 310 0 555 248 35 28 chr13 35705323 35705464 -84039434 - L2 LINE L2 0 3313 3172 2509 181 32 42 chr13 35705476 35705509 -84039389 + L1MB5 LINE L1 4672 4704 -1470 2319 95 0 13 chr13 35705509 35705815 -84039083 + AluSg SINE Alu 1 302 -8 2509 181 32 42 chr13 35705815 35706537 -84038361 + L1MB5 LINE L1 4704 5417 -757 2347 107 0 16 chr13 35706537 35706854 -84038044 + AluSx SINE Alu 1 312 0 2509 181 32 42 chr13 35706854 35707170 -84037728 + L1MB5 LINE L1 5417 5735 -439 1380 184 0 22 chr13 35707230 35707502 -84037396 + L1MB5 LINE L1 5901 6166 -8 22 35 0 0 chr13 35707502 35707531 -84037367 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr13 35707537 35707580 -84037318 + (TG)n Simple_repeat Simple_repeat 2 44 0 946 245 69 87 chr13 35707597 35707687 -84037211 - L2 LINE L2 -172 3141 3051 2296 109 3 0 chr13 35707687 35707989 -84036909 + AluSg SINE Alu 1 303 -7 946 245 69 87 chr13 35707989 35708451 -84036447 - L2 LINE L2 -262 3051 2608 234 323 71 8 chr13 35708488 35708615 -84036283 + L2 LINE L2 2185 2319 -995 2987 217 61 50 chr13 35708807 35710037 -84034861 - L1M4 LINE L1 -1462 4684 3441 2596 55 0 7 chr13 35710107 35710415 -84034483 + AluY SINE Alu 1 306 -5 189 0 0 0 chr13 35711191 35711212 -84033686 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 27 73 0 0 chr13 35711445 35711500 -84033398 + AT_rich Low_complexity Low_complexity 1 55 0 1840 160 0 0 chr13 35711832 35712155 -84032743 + AluJb SINE Alu 1 323 0 927 144 133 26 chr13 35712701 35712896 -84032002 + MER20 DNA MER1_type 1 216 -3 2069 134 48 31 chr13 35713749 35714107 -84030791 - THE1B LTR MaLR 0 364 1 26 30 0 0 chr13 35714289 35714322 -84030576 + AT_rich Low_complexity Low_complexity 1 33 0 560 286 59 23 chr13 35714462 35714792 -84030106 - L1ME3 LINE L1 -239 5923 5684 264 111 0 0 chr13 35714802 35714847 -84030051 + (TA)n Simple_repeat Simple_repeat 1 45 0 255 276 20 0 chr13 35715103 35715201 -84029697 - L1ME3 LINE L1 -508 5654 5555 231 269 0 0 chr13 35716939 35716991 -84027907 + L2 LINE L2 3261 3312 -1 1785 137 77 58 chr13 35719755 35720120 -84024778 - THE1C LTR MaLR 0 375 4 186 304 169 11 chr13 35720307 35720491 -84024407 + L2 LINE L2 1293 1505 -1809 429 314 80 81 chr13 35720590 35720742 -84024156 + L2 LINE L2 2558 2709 -563 2338 110 0 0 chr13 35720742 35721050 -84023848 + AluSx SINE Alu 1 308 -4 429 314 80 81 chr13 35721050 35721097 -84023801 + L2 LINE L2 2709 2755 -517 836 127 110 0 chr13 35721097 35721215 -84023683 + FLAM_C SINE Alu 3 133 0 429 314 80 81 chr13 35721215 35721727 -84023171 + L2 LINE L2 2755 3272 0 535 274 124 0 chr13 35722014 35722200 -84022698 + MIR SINE MIR 5 213 -49 180 0 0 0 chr13 35722862 35722882 -84022016 + (TG)n Simple_repeat Simple_repeat 2 21 0 208 320 0 39 chr13 35724326 35724404 -84020494 - MIR SINE MIR -68 140 66 1955 167 0 0 chr13 35724485 35724797 -84020101 - AluJb SINE Alu 0 312 1 806 192 58 13 chr13 35725306 35725462 -84019436 - AluJo SINE Alu -30 282 120 385 65 16 16 chr13 35725984 35726046 -84018852 + (CA)n Simple_repeat Simple_repeat 2 63 0 1436 209 94 0 chr13 35727249 35727631 -84017267 - Charlie1 DNA MER1_type -1 2760 2343 387 211 0 14 chr13 35727630 35727701 -84017197 - Charlie1 DNA MER1_type -2691 70 1 * 308 239 97 0 chr13 35727725 35727838 -84017060 + L1ME4a LINE L1 5994 6117 -4 443 163 255 0 chr13 35728209 35728307 -84016591 - FRAM SINE Alu -35 141 19 207 69 0 0 chr13 35729535 35729564 -84015334 + (AACTG)n Simple_repeat Simple_repeat 2 30 0 1857 176 48 9 chr13 35729700 35730035 -84014863 - MER7A DNA MER2_type 0 346 1 191 167 24 0 chr13 35730071 35730113 -84014785 + (TG)n Simple_repeat Simple_repeat 2 44 0 2080 112 27 0 chr13 35730890 35731184 -84013714 - AluSc SINE Alu -7 302 1 782 221 164 14 chr13 35731589 35731869 -84013029 - MER5C DNA MER1_type 0 324 3 21 36 0 0 chr13 35731958 35731986 -84012912 + AT_rich Low_complexity Low_complexity 1 28 0 226 0 0 0 chr13 35733049 35733076 -84011822 - L1MC2 LINE L1 -16 6328 6302 435 38 0 0 chr13 35733630 35733683 -84011215 + (CA)n Simple_repeat Simple_repeat 2 54 0 2273 102 0 13 chr13 35734091 35734405 -84010493 + AluSg SINE Alu 1 310 0 854 325 105 24 chr13 35734998 35735669 -84009229 + L2 LINE L2 2450 3198 -74 2210 132 0 0 chr13 35735669 35735980 -84008918 - AluJb SINE Alu -1 311 1 854 325 105 24 chr13 35735980 35736056 -84008842 + L2 LINE L2 3198 3266 -6 2184 104 3 7 chr13 35738566 35738864 -84006034 - AluSx SINE Alu -15 297 1 532 405 36 13 chr13 35739359 35739663 -84005235 - L2 LINE L2 -31 3241 2931 425 340 159 11 chr13 35739802 35740172 -84004726 - L2 LINE L2 -433 2881 2457 375 292 0 0 chr13 35740309 35740398 -84004500 - L2 LINE L2 -11 3302 3214 1455 226 35 67 chr13 35740418 35740719 -84004179 - MSTD LTR MaLR -7 389 103 2308 89 3 0 chr13 35740719 35741012 -84003886 - AluSg SINE Alu -16 294 1 1455 226 35 67 chr13 35741012 35741112 -84003786 - MSTD LTR MaLR -293 103 1 485 250 9 102 chr13 35741495 35741711 -84003187 - L2 LINE L2 -91 3222 3027 309 172 0 0 chr13 35742151 35742215 -84002683 + (TG)n Simple_repeat Simple_repeat 1 64 0 249 280 72 106 chr13 35742235 35742471 -84002427 - L2 LINE L2 -565 2749 2522 215 159 0 45 chr13 35742666 35742710 -84002188 - L2 LINE L2 -13 3259 3218 269 278 52 31 chr13 35742898 35742995 -84001903 - L2 LINE L2 -189 3083 2985 258 280 40 82 chr13 35746233 35746266 -83998632 + L2 LINE L2 2063 2096 -1218 1530 195 10 13 chr13 35746266 35746573 -83998325 - AluJo SINE Alu -6 306 1 258 280 40 82 chr13 35746573 35746789 -83998109 + L2 LINE L2 2096 2350 -964 481 270 73 40 chr13 35746869 35747066 -83997832 + MIR SINE MIR 53 256 -6 729 196 184 0 chr13 35747537 35747705 -83997193 - L1MA6 LINE L1 -9 6291 6093 637 133 29 0 chr13 35747700 35747805 -83997093 + L1MA6 LINE L1 5969 6076 -224 * 296 325 121 19 chr13 35748767 35749118 -83995780 - L2 LINE L2 -204 3068 2649 1761 169 13 7 chr13 35749506 35749814 -83995084 + AluSx SINE Alu 1 310 -2 1848 155 28 0 chr13 35749976 35750266 -83994632 - AluSx SINE Alu -14 298 1 1852 151 0 3 chr13 35750430 35750739 -83994159 + AluSx SINE Alu 1 308 0 271 290 60 0 chr13 35751171 35751271 -83993627 + L3 LINE CR1 645 750 -827 2284 77 0 20 chr13 35751545 35751866 -83993032 + AluY SINE Alu 1 311 0 525 290 172 7 chr13 35751880 35752159 -83992739 + L3 LINE CR1 1209 1533 -44 737 236 173 5 chr13 35752161 35752352 -83992546 + MER58A DNA MER1_type 2 224 0 497 145 297 7 chr13 35753168 35753204 -83991694 + MER3 DNA MER1_type 15 39 -170 687 160 101 25 chr13 35753204 35753323 -83991575 + FLAM_A SINE Alu 1 128 -5 497 145 297 7 chr13 35753323 35753424 -83991474 + MER3 DNA MER1_type 39 192 -17 1794 163 0 7 chr13 35754003 35754286 -83990612 - AluJo SINE Alu -14 298 18 1151 167 5 31 chr13 35756542 35756734 -83988164 + AluJo SINE Alu 1 187 -125 304 211 70 53 chr13 35757097 35757211 -83987687 + L2 LINE L2 2330 2445 -869 2241 176 55 2 chr13 35757223 35757621 -83987277 + MSTA LTR MaLR 1 419 -9 292 349 93 40 chr13 35757817 35758195 -83986703 + L2 LINE L2 2816 3213 -59 495 318 23 0 chr13 35758408 35758581 -83986317 + MIR SINE MIR 7 183 -79 608 215 182 23 chr13 35758612 35758826 -83986072 + MLT1J LTR MaLR 234 481 -30 351 329 121 0 chr13 35759978 35760209 -83984689 + L2 LINE L2 1616 1874 -1440 257 360 167 23 chr13 35760571 35761002 -83983896 + L2 LINE L2 2346 2838 -476 858 205 0 48 chr13 35761668 35761834 -83983064 - FRAM SINE Alu -18 158 1 303 282 13 0 chr13 35761975 35762053 -83982845 + MLT1L LTR MaLR 489 567 -48 380 270 159 26 chr13 35763911 35764100 -83980798 + MIR SINE MIR 32 245 -17 259 249 0 12 chr13 35766375 35766455 -83978443 + L1MC4a LINE L1 6830 6962 -918 511 245 53 32 chr13 35766584 35766772 -83978126 + L1MC5 LINE L1 7042 7233 -728 849 235 76 45 chr13 35766918 35767093 -83977805 + L1MC5 LINE L1 7292 7460 -501 2278 87 24 0 chr13 35767093 35767391 -83977507 + AluSq SINE Alu 1 305 -8 849 235 76 45 chr13 35767391 35767700 -83977198 + L1MC5 LINE L1 7460 7791 -170 267 311 107 45 chr13 35767805 35767982 -83976916 + MIR SINE MIR 74 261 -1 216 0 0 0 chr13 35768106 35768130 -83976768 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 329 296 141 41 chr13 35769062 35769282 -83975616 + L1M2 LINE L1 678 919 -5930 272 171 66 26 chr13 35769392 35769468 -83975430 + MER53 DNA DNA 1 79 -110 496 177 108 15 chr13 35769538 35769668 -83975230 - L1MB3 LINE L1 0 6183 6042 273 197 141 0 chr13 35769760 35769831 -83975067 - MER53 DNA DNA -108 81 1 2602 37 0 0 chr13 35769966 35770266 -83974632 + AluY SINE Alu 1 300 -11 2241 65 4 0 chr13 35771030 35771309 -83973589 + AluSx SINE Alu 1 280 -32 1161 212 90 34 chr13 35771419 35771797 -83973101 - Charlie4a DNA MER1_type -47 461 63 423 284 194 27 chr13 35773272 35773494 -83971404 - MIR SINE MIR 0 262 4 534 248 55 76 chr13 35773561 35773776 -83971122 - MIR SINE MIR -18 244 33 2362 81 0 0 chr13 35773776 35774074 -83970824 - AluSx SINE Alu -14 298 1 534 248 55 76 chr13 35774074 35774096 -83970802 - MIR SINE MIR -229 33 12 187 267 50 33 chr13 35774160 35774220 -83970678 + MER5B DNA MER1_type 100 160 -18 1579 194 17 7 chr13 35774736 35775029 -83969869 + AluJo SINE Alu 1 296 -16 2198 107 10 3 chr13 35775487 35775787 -83969111 + AluSc SINE Alu 1 302 -7 433 215 50 41 chr13 35777586 35777707 -83967191 + MIR SINE MIR 111 232 -30 1415 97 5 5 chr13 35778375 35778560 -83966338 + AluSx SINE Alu 1 185 -127 331 148 0 19 chr13 35778896 35778950 -83965948 - MER5A DNA MER1_type 0 189 137 271 258 58 67 chr13 35781044 35781164 -83963734 - MIR3 SINE MIR -25 183 65 2911 220 57 59 chr13 35782507 35783578 -83961320 + L1M4 LINE L1 4114 5182 -964 1945 234 173 4 chr13 35783975 35784692 -83960206 + L1MB2 LINE L1 2248 3085 -3061 4153 163 56 48 chr13 35784924 35786049 -83958849 + L1MB2 LINE L1 5002 6139 -32 2110 98 14 20 chr13 35786049 35786345 -83958553 + AluSc SINE Alu 1 294 -15 21 0 0 0 chr13 35786372 35786393 -83958505 + AT_rich Low_complexity Low_complexity 1 21 0 407 205 36 0 chr13 35786578 35786661 -83958237 + MER5B DNA MER1_type 92 177 -1 281 275 136 34 chr13 35786823 35786959 -83957939 + MIR SINE MIR 8 151 -61 285 287 85 0 chr13 35787324 35787418 -83957480 - L2 LINE L2 -4 3309 3208 32 0 0 0 chr13 35788011 35788043 -83956855 + AT_rich Low_complexity Low_complexity 1 32 0 1742 176 28 0 chr13 35788565 35788849 -83956049 - AluJb SINE Alu -20 292 1 370 213 287 0 chr13 35789878 35790000 -83954898 - MER58C DNA MER1_type -2 213 57 928 237 58 13 chr13 35790781 35791005 -83953893 - MIR SINE MIR -20 242 9 188 33 0 33 chr13 35792866 35792896 -83952002 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr13 35794403 35794445 -83950453 + AT_rich Low_complexity Low_complexity 1 42 0 2259 108 0 0 chr13 35794845 35795142 -83949756 - AluSx SINE Alu -15 297 1 326 226 107 12 chr13 35795887 35795971 -83948927 - MIR3 SINE MIR -6 202 111 677 124 39 8 chr13 35797029 35797158 -83947740 + L1PA16 LINE L1 6034 6166 0 456 290 79 8 chr13 35798531 35798733 -83946165 - MIR SINE MIR -37 225 13 21 0 0 0 chr13 35798842 35798863 -83946035 + AT_rich Low_complexity Low_complexity 1 21 0 2207 94 23 16 chr13 35799147 35799456 -83945442 + AluSq SINE Alu 1 311 -2 444 331 29 29 chr13 35800294 35800469 -83944429 - MER5A DNA MER1_type -14 175 1 * 541 183 183 0 chr13 35800467 35800620 -83944278 + MER5A DNA MER1_type 4 188 -1 24 67 0 0 chr13 35801032 35801077 -83943821 + AT_rich Low_complexity Low_complexity 1 45 0 346 323 35 72 chr13 35801884 35802231 -83942667 - L2 LINE L2 -13 3300 2967 2372 190 16 5 chr13 35802235 35802682 -83942216 + L1MCa LINE L1 21 472 -5954 33 25 0 0 chr13 35803034 35803074 -83941824 + AT_rich Low_complexity Low_complexity 1 40 0 652 202 0 0 chr13 35803124 35803238 -83941660 + FLAM_C SINE Alu 6 119 -24 12673 132 63 17 chr13 35803698 35805425 -83939473 + Tigger1 DNA MER2_type 24 1873 -545 2035 115 0 39 chr13 35805425 35805730 -83939168 - AluSg SINE Alu -16 294 2 12673 132 63 17 chr13 35805730 35806173 -83938725 + Tigger1 DNA MER2_type 1873 2294 -124 393 135 0 95 chr13 35806173 35806228 -83938670 + Tigger2 DNA MER2_type 1 49 -2669 2218 106 10 0 chr13 35806228 35806520 -83938378 - AluSc SINE Alu -14 295 1 393 135 0 95 chr13 35806520 35806538 -83938360 + Tigger2 DNA MER2_type 49 67 -2651 * 2144 153 88 10 chr13 35806524 35806814 -83938084 + Tigger2 DNA MER2_type 2267 2601 -117 1800 174 7 7 chr13 35806814 35807113 -83937785 + AluJb SINE Alu 2 300 -12 2144 153 88 10 chr13 35807113 35807240 -83937658 + Tigger2 DNA MER2_type 2601 2717 -1 737 192 0 0 chr13 35807241 35807366 -83937532 + Tigger1 DNA MER2_type 2293 2417 -1 443 259 54 9 chr13 35807408 35807520 -83937378 - L2 LINE L2 0 3313 3197 324 254 8 31 chr13 35807827 35807957 -83936941 - L1MC5 LINE L1 -543 7418 7292 581 258 67 21 chr13 35808127 35808367 -83936531 - L1MC5 LINE L1 -754 7207 6957 8023 116 44 9 chr13 35808588 35809846 -83935052 + HSMAR2 DNA Mariner 1 1301 -1 2312 90 7 3 chr13 35811138 35811439 -83933459 + AluY SINE Alu 1 302 -9 687 268 195 49 chr13 35811591 35812017 -83932881 - L2 LINE L2 -2 3311 2824 1595 303 133 25 chr13 35812101 35812766 -83932132 - L2 LINE L2 -885 2429 1625 1020 165 146 0 chr13 35812766 35812972 -83931926 - MER46A DNA MER2_type 0 236 1 1595 303 133 25 chr13 35812972 35813276 -83931622 - L2 LINE L2 -1689 1625 1355 401 136 0 0 chr13 35813560 35813619 -83931279 - AluJ/FRAM SINE Alu -25 287 229 328 313 81 38 chr13 35813792 35813952 -83930946 + L1M2 LINE L1 753 919 -5930 272 171 66 26 chr13 35814062 35814138 -83930760 + MER53 DNA DNA 1 79 -110 496 177 108 15 chr13 35814208 35814338 -83930560 - L1MB3 LINE L1 0 6183 6042 273 197 141 0 chr13 35814430 35814501 -83930397 - MER53 DNA DNA -108 81 1 2602 37 0 0 chr13 35814636 35814936 -83929962 + AluY SINE Alu 1 300 -11 2241 65 4 0 chr13 35815700 35815979 -83928919 + AluSx SINE Alu 1 280 -32 1161 212 90 34 chr13 35816089 35816467 -83928431 - Charlie4a DNA MER1_type -47 461 63 422 284 194 27 chr13 35817942 35818164 -83926734 - MIR SINE MIR 0 262 4 538 291 37 16 chr13 35818231 35818420 -83926478 - MIR SINE MIR -18 244 52 2346 87 0 3 chr13 35818446 35818744 -83926154 - AluY SINE Alu -14 297 1 602 297 42 17 chr13 35818855 35819209 -83925689 - HAL1 LINE L1 -918 1589 1227 2306 105 0 0 chr13 35819444 35819739 -83925159 - AluSq SINE Alu -18 295 1 250 254 16 32 chr13 35821434 35821497 -83923401 - L2 LINE L2 -2 3311 3250 243 317 0 0 chr13 35821697 35821757 -83923141 + L2 LINE L2 3213 3272 0 2290 126 0 0 chr13 35821774 35822084 -83922814 - AluSx SINE Alu -2 310 1 329 291 12 0 chr13 35822134 35822220 -83922678 - L2 LINE L2 -1 3271 3185 2173 178 141 6 chr13 35822223 35822707 -83922191 + MER44D DNA MER2_type 2 605 0 456 141 12 0 chr13 35823341 35823426 -83921472 - L1MB8 LINE L1 0 6178 6093 294 90 0 115 chr13 35823429 35823478 -83921420 - L1MB3 LINE L1 0 6183 6145 2113 113 14 0 chr13 35823478 35823769 -83921129 - AluSq SINE Alu -18 295 1 294 90 0 115 chr13 35823769 35823797 -83921101 - L1MB3 LINE L1 -38 6145 6115 250 113 0 0 chr13 35823802 35823855 -83921043 + AluS SINE Alu 5 57 -251 248 200 36 0 chr13 35823958 35824013 -83920885 - AluSp SINE Alu -133 170 114 1911 113 50 0 chr13 35824021 35824303 -83920595 + AluSx SINE Alu 1 296 -16 1889 194 101 6 chr13 35824303 35824778 -83920120 - L1MB4 LINE L1 -59 6121 5602 1738 179 24 14 chr13 35824787 35825084 -83919814 - AluJo SINE Alu -12 300 1 574 297 28 11 chr13 35825212 35825394 -83919504 + MER5A DNA MER1_type 4 188 -1 349 283 30 10 chr13 35826750 35826849 -83918049 - MER5A DNA MER1_type -80 109 9 349 93 27 107 chr13 35829085 35829160 -83915738 + 5S rRNA rRNA 49 117 -4 * 686 89 10 0 chr13 35829124 35829225 -83915673 - MER41B LTR ERV1 -533 102 1 1734 196 83 10 chr13 35829637 35830035 -83914863 - MSTB1 LTR MaLR -5 427 1 346 281 244 12 chr13 35830504 35830746 -83914152 - L2 LINE L2 0 3313 3016 3840 124 19 20 chr13 35830746 35831382 -83913516 - MER41B LTR ERV1 0 635 1 409 176 10 29 chr13 35831411 35831513 -83913385 - MER4B LTR ERV1 -510 100 1 292 219 24 61 chr13 35831513 35831595 -83913303 - L2 LINE L2 -592 2722 2644 2124 116 7 3 chr13 35831596 35831888 -83913010 - AluSx SINE Alu -15 297 5 1092 161 78 0 chr13 35831940 35832075 -83912823 - L1MA9 LINE L1 -383 5929 5769 398 36 18 0 chr13 35832075 35832131 -83912767 + (CA)n Simple_repeat Simple_repeat 2 58 0 1092 161 78 0 chr13 35832131 35832213 -83912685 - L1MA9 LINE L1 -543 5769 5695 216 170 75 57 chr13 35832317 35832370 -83912528 - MIR SINE MIR -98 164 111 804 128 0 0 chr13 35832747 35832856 -83912042 + AluSg/x SINE Alu 186 294 -18 2418 68 0 13 chr13 35833424 35833735 -83911163 + AluY SINE Alu 1 307 -4 3383 101 29 29 chr13 35833998 35834186 -83910712 - MER41A LTR ERV1 0 554 367 2355 96 3 0 chr13 35834186 35834498 -83910400 - AluSp SINE Alu 0 313 1 3383 101 29 29 chr13 35834498 35834853 -83910045 - MER41A LTR ERV1 -186 368 11 322 265 45 8 chr13 35835033 35835165 -83909733 + L1ME4a LINE L1 5805 5941 -180 1067 178 5 11 chr13 35835165 35835350 -83909548 + AluJo SINE Alu 1 184 -128 280 181 118 94 chr13 35835358 35835485 -83909413 + L1ME4a LINE L1 5960 6089 -32 598 237 6 41 chr13 35835701 35835870 -83909028 - MER91B DNA MER1_type -1 189 27 22 35 0 0 chr13 35835941 35835970 -83908928 + AT_rich Low_complexity Low_complexity 1 29 0 330 253 129 17 chr13 35835998 35836239 -83908659 - L1MC5 LINE L1 -51 7910 7643 2327 85 0 7 chr13 35837072 35837377 -83907521 + AluSq SINE Alu 1 303 -10 361 230 240 0 chr13 35837378 35837478 -83907420 + MER5A DNA MER1_type 66 189 0 1575 141 119 15 chr13 35838895 35839164 -83905734 - AluSx SINE Alu -1 311 15 2284 95 3 16 chr13 35839504 35839808 -83905090 + AluSx SINE Alu 1 300 -12 2239 125 0 0 chr13 35839988 35840299 -83904599 - AluSx SINE Alu -1 311 1 2254 101 0 0 chr13 35840885 35841171 -83903727 - AluSg SINE Alu -24 286 1 225 196 36 18 chr13 35842486 35842542 -83902356 + MIR3 SINE MIR 151 207 -1 * 4145 265 171 5 chr13 35842539 35843497 -83901401 - L2 LINE L2 0 3313 2515 2313 104 3 7 chr13 35843497 35843806 -83901092 + AluSx SINE Alu 1 308 -4 4145 265 171 5 chr13 35843806 35844679 -83900219 - L2 LINE L2 -798 2515 1190 22 0 0 0 chr13 35844810 35844832 -83900066 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr13 35844879 35844900 -83899998 + (GA)n Simple_repeat Simple_repeat 2 22 0 206 311 122 0 chr13 35844988 35845062 -83899836 - L2 LINE L2 -27 3286 3204 366 289 31 23 chr13 35847168 35847296 -83897602 - L2 LINE L2 -1 3312 3184 2390 74 20 0 chr13 35847679 35847975 -83896923 - AluSc SINE Alu -7 302 1 850 228 0 12 chr13 35848053 35848220 -83896678 + FRAM SINE Alu 2 166 0 189 0 0 0 chr13 35848837 35848858 -83896040 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 222 171 0 0 chr13 35849041 35849082 -83895816 + (TA)n Simple_repeat Simple_repeat 2 42 0 182 303 15 30 chr13 35849971 35850037 -83894861 + L2 LINE L2 3144 3208 -64 270 233 164 43 chr13 35850218 35850334 -83894564 - L2 LINE L2 -56 3257 3128 414 19 0 19 chr13 35850736 35850788 -83894110 + AluYb8 SINE Alu 241 291 -27 2189 112 3 10 chr13 35851312 35851617 -83893281 + AluSx SINE Alu 1 303 -9 936 214 0 5 chr13 35851617 35851832 -83893066 + L1 LINE L1 5164 5377 -769 4348 132 15 16 chr13 35851938 35852671 -83892227 + HSMAR2 DNA Mariner 570 1301 -1 21 0 0 0 chr13 35854299 35854320 -83890578 + AT_rich Low_complexity Low_complexity 1 21 0 670 244 52 14 chr13 35856402 35856615 -83888283 - MER58A DNA MER1_type -1 223 3 354 216 43 58 chr13 35856667 35856806 -83888092 + L1MA10 LINE L1 6196 6332 -2 442 234 58 23 chr13 35859108 35859279 -83885619 - MER104 DNA MER2_type 0 180 4 2220 122 3 0 chr13 35859451 35859763 -83885135 + AluSq SINE Alu 1 313 0 646 161 89 16 chr13 35860232 35860356 -83884542 + FLAM_C SINE Alu 1 133 0 6712 69 18 6 chr13 35862018 35863698 -83881200 + L1PA8 LINE L1 4482 6172 0 198 0 0 0 chr13 35863725 35863747 -83881151 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 18233 31 3 0 chr13 35863800 35866773 -83878125 + L1PA4 LINE L1 3176 6155 0 418 234 90 30 chr13 35866802 35866969 -83877929 - MER5B DNA MER1_type 0 178 2 1720 162 26 23 chr13 35867011 35867319 -83877579 + AluJb SINE Alu 1 309 -3 201 74 0 0 chr13 35867519 35867546 -83877352 + (A)n Simple_repeat Simple_repeat 1 27 0 660 138 14 65 chr13 35867548 35867686 -83877212 + AluJb SINE Alu 2 132 -180 2202 116 0 0 chr13 35867686 35867988 -83876910 + AluSx SINE Alu 1 302 -10 1778 103 57 21 chr13 35867991 35868273 -83876625 + AluSq SINE Alu 1 292 -21 193 241 126 46 chr13 35868612 35868699 -83876199 - MIR SINE MIR -92 170 77 2122 120 7 3 chr13 35870133 35870441 -83874457 - AluSx SINE Alu -3 309 1 251 182 91 0 chr13 35870504 35870559 -83874339 + L1MB5 LINE L1 6047 6106 -68 3442 179 56 16 chr13 35870562 35871485 -83873413 - L1MB5 LINE L1 -128 6046 5086 591 178 99 20 chr13 35871513 35871665 -83873233 - MLT1B LTR MaLR -219 171 8 4128 235 66 66 chr13 35871671 35871923 -83872975 - MLT1B-int LTR MaLR -6 1365 1114 180 0 0 0 chr13 35871923 35871943 -83872955 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4128 235 66 66 chr13 35871943 35872277 -83872621 - MLT1B-int LTR MaLR -257 1114 781 2225 121 0 0 chr13 35872277 35872574 -83872324 + AluSg SINE Alu 1 297 -13 4128 235 66 66 chr13 35872574 35873351 -83871547 - MLT1B-int LTR MaLR -589 782 1 1116 209 48 129 chr13 35873355 35873775 -83871123 - MLT1B LTR MaLR -4 386 1 799 201 62 84 chr13 35873776 35873859 -83871039 - L1MB5 LINE L1 -1750 4396 4313 1619 191 124 14 chr13 35873859 35874214 -83870684 - MSTD LTR MaLR -2 394 1 799 201 62 84 chr13 35874214 35874404 -83870494 - L1MB5 LINE L1 -1833 4313 4129 2036 169 24 0 chr13 35874410 35874742 -83870156 - MLT2C1 LTR ERVL -57 340 1 278 211 40 138 chr13 35874747 35874899 -83869999 + MLT1I LTR MaLR 1 137 -272 477 34 0 0 chr13 35874974 35875033 -83869865 + (TG)n Simple_repeat Simple_repeat 2 60 0 778 217 50 97 chr13 35875037 35875327 -83869571 + L1MC5 LINE L1 6864 7020 -788 2198 121 7 0 chr13 35875327 35875634 -83869264 - AluSq SINE Alu -4 309 1 778 217 50 97 chr13 35875634 35875784 -83869114 + L1MC5 LINE L1 7020 7176 -632 491 149 56 28 chr13 35875866 35875973 -83868925 + L1MC5 LINE L1 7279 7388 -573 1069 147 0 0 chr13 35876844 35877007 -83867891 - AluSq SINE Alu -17 296 134 483 33 0 0 chr13 35877013 35877074 -83867824 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2198 105 0 10 chr13 35877074 35877361 -83867537 - AluSx SINE Alu -26 286 1 1315 175 72 73 chr13 35877405 35877779 -83867119 + MER67C LTR ERV1 15 408 -243 5277 169 16 4 chr13 35877819 35878803 -83866095 + L1MB4 LINE L1 5184 6179 -1 433 224 95 0 chr13 35878834 35878950 -83865948 + MER67D LTR ERV1 380 506 -8 5360 203 85 60 chr13 35879695 35881354 -83863544 + MER52A LTR ERV1 55 1755 0 1795 153 139 44 chr13 35882207 35882574 -83862324 - MER93a LTR ERV1 0 402 1 444 307 130 38 chr13 35882609 35882770 -83862128 - L2 LINE L2 0 3313 3168 2137 223 116 2 chr13 35882770 35883286 -83861612 - MER90 LTR ERV1 0 575 1 444 307 130 38 chr13 35883286 35883547 -83861351 - L2 LINE L2 -145 3168 2852 2165 102 20 0 chr13 35883702 35883995 -83860903 - AluSq SINE Alu -14 299 1 228 200 175 13 chr13 35884206 35884301 -83860597 + L2 LINE L2 2818 2930 -342 671 193 128 100 chr13 35884321 35884773 -83860125 - L1MC5 LINE L1 -223 7738 7274 190 326 113 28 chr13 35885699 35885840 -83859058 + MIR SINE MIR 33 185 -77 236 241 0 0 chr13 35885841 35885895 -83859003 + L2 LINE L2 2041 2094 -1220 3061 172 28 7 chr13 35885908 35886699 -83858199 - L1MB7 LINE L1 -356 5828 5025 1073 183 44 21 chr13 35886780 35887142 -83857756 + MER63 DNA MER1_type 4 435 -626 1261 178 5 5 chr13 35887154 35887368 -83857530 + MER63 DNA MER1_type 675 888 -173 1213 204 92 32 chr13 35887426 35887740 -83857158 + MER2 DNA MER2_type 7 339 -6 1995 125 14 3 chr13 35887765 35888054 -83856844 - AluSx SINE Alu -20 292 1 800 173 5 70 chr13 35888054 35888174 -83856724 + MER63 DNA MER1_type 889 995 -67 2016 131 3 0 chr13 35888174 35888485 -83856413 - AluSx SINE Alu 0 312 1 800 173 5 70 chr13 35888485 35888548 -83856350 + MER63 DNA MER1_type 995 1061 -1 193 320 103 57 chr13 35888799 35888974 -83855924 - MER5A DNA MER1_type 0 189 7 302 115 19 0 chr13 35889202 35889254 -83855644 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 190 356 0 0 chr13 35889279 35889324 -83855574 - L2 LINE L2 -86 3186 3142 1471 171 103 40 chr13 35889565 35889886 -83855012 - MER2 DNA MER2_type -1 343 3 2301 107 0 0 chr13 35890026 35890326 -83854572 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 35890434 35890459 -83854439 + AT_rich Low_complexity Low_complexity 1 25 0 192 318 117 103 chr13 35890953 35891176 -83853722 + MIR SINE MIR 37 262 0 182 322 81 35 chr13 35891340 35891427 -83853471 - L2 LINE L2 -154 3118 3028 27 0 0 0 chr13 35891983 35892010 -83852888 + AT_rich Low_complexity Low_complexity 1 27 0 2166 104 0 3 chr13 35892881 35893170 -83851728 + AluSq SINE Alu 12 299 -14 223 354 10 10 chr13 35893200 35893299 -83851599 + L3b LINE CR1 1374 1472 -111 2150 106 3 7 chr13 35893363 35893655 -83851243 - AluSx SINE Alu -21 291 1 186 420 58 14 chr13 35893794 35893932 -83850966 + L2 LINE L2 3107 3250 -22 202 359 46 53 chr13 35894206 35894337 -83850561 + L2 LINE L2 3132 3261 -11 320 170 19 0 chr13 35894486 35894539 -83850359 - MER46C DNA MER2_type -10 328 275 377 121 15 15 chr13 35894575 35894641 -83850257 - MER46C DNA MER2_type -178 160 95 1191 118 0 6 chr13 35894868 35895037 -83849861 + AluSg SINE Alu 1 168 -142 1803 106 0 0 chr13 35895631 35895876 -83849022 - AluSx SINE Alu -67 245 1 21 0 0 0 chr13 35896077 35896098 -83848800 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr13 35896376 35896419 -83848479 + AT_rich Low_complexity Low_complexity 1 43 0 2016 177 39 14 chr13 35896566 35896922 -83847976 - MLT1A1 LTR MaLR 0 365 1 3718 64 14 0 chr13 35897064 35897502 -83847396 - MLT2A1 LTR ERVL 0 444 1 788 321 49 49 chr13 35898052 35898482 -83846416 - MLT1K LTR MaLR -3 585 156 1219 130 6 0 chr13 35899246 35899423 -83845475 - AluSg/x SINE Alu -11 301 124 2056 191 27 12 chr13 35899860 35900217 -83844681 + MLT2D LTR ERVL 1 351 -63 543 53 0 0 chr13 35900217 35900292 -83844606 + (TC)n Simple_repeat Simple_repeat 2 76 0 * 612 0 0 0 chr13 35900291 35900359 -83844539 + (TA)n Simple_repeat Simple_repeat 1 68 0 2056 191 27 12 chr13 35900292 35900409 -83844489 + MLT2D LTR ERVL 351 414 0 3982 112 11 20 chr13 35900584 35901137 -83843761 + LTR14 LTR ERVK 1 548 0 694 241 113 108 chr13 35901903 35901938 -83842960 + MLT1F1 LTR MaLR 15 48 -494 1781 131 91 0 chr13 35901938 35902212 -83842686 - AluSx SINE Alu -13 299 1 694 241 113 108 chr13 35902212 35902637 -83842261 + MLT1F1 LTR MaLR 48 477 -65 231 199 211 70 chr13 35902946 35903102 -83841796 + MIR SINE MIR 85 262 0 235 337 77 36 chr13 35903157 35903353 -83841545 + L2 LINE L2 1989 2192 -1122 228 287 122 43 chr13 35904511 35904626 -83840272 + L2 LINE L2 2933 3056 -257 536 202 57 16 chr13 35904879 35905003 -83839895 - MER94 DNA DNA -4 130 2 1897 167 53 21 chr13 35905208 35905586 -83839312 - MLT1B LTR MaLR 0 390 1 2174 120 0 0 chr13 35905720 35906011 -83838887 - AluSx SINE Alu -21 291 1 23 33 0 0 chr13 35906083 35906113 -83838785 + AT_rich Low_complexity Low_complexity 1 30 0 1708 129 12 74 chr13 35906126 35906484 -83838414 + AluSx SINE Alu 1 312 0 561 295 155 14 chr13 35906747 35906954 -83837944 + MER115 DNA AcHobo 455 690 -3 2134 125 0 0 chr13 35906954 35907249 -83837649 - AluSx SINE Alu -17 295 1 334 286 204 10 chr13 35907262 35907468 -83837430 - MIR SINE MIR -14 248 3 802 264 338 6 chr13 35908719 35909193 -83835705 + L2 LINE L2 2319 2949 -365 280 141 98 7 chr13 35909241 35909322 -83835576 - MER92B LTR ERV1 -26 528 288 595 210 73 10 chr13 35909345 35909497 -83835401 - MER92B LTR ERV1 -389 165 5 392 182 114 0 chr13 35909953 35910041 -83834857 - Charlie1 DNA MER1_type -2336 425 328 542 105 324 0 chr13 35910057 35910162 -83834736 - MER21B LTR ERV1 -396 467 329 684 274 98 29 chr13 35910162 35910436 -83834462 + L2 LINE L2 3020 3312 -1 31 68 0 0 chr13 35911654 35911713 -83833185 + AT_rich Low_complexity Low_complexity 1 59 0 2071 113 7 7 chr13 35911905 35912197 -83832701 - AluSx SINE Alu -18 294 3 212 269 127 49 chr13 35916110 35916259 -83828639 - MIR SINE MIR -61 147 11 544 304 43 11 chr13 35917026 35917210 -83827688 - MLT1I LTR MaLR -18 391 202 383 276 39 31 chr13 35917334 35917461 -83827437 - MIR SINE MIR -105 157 30 309 335 14 91 chr13 35918012 35918221 -83826677 + L2 LINE L2 2897 3089 -183 298 104 21 0 chr13 35918383 35918431 -83826467 - L2 LINE L2 0 3313 3265 314 333 0 10 chr13 35918431 35918527 -83826371 - MIR SINE MIR -156 106 12 262 194 0 48 chr13 35918768 35918830 -83826068 - MER69 DNA AcHobo -5 2521 2463 282 29 0 0 chr13 35918830 35918865 -83826033 + (CAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr13 35920850 35920879 -83824019 + AT_rich Low_complexity Low_complexity 1 29 0 464 268 0 36 chr13 35920879 35921047 -83823851 + L1M4 LINE L1 60 221 -6321 638 318 74 12 chr13 35921845 35922087 -83822811 - MIR SINE MIR 0 262 6 262 194 30 30 chr13 35922240 35922307 -83822591 - L1MC5 LINE L1 -50 7911 7845 841 211 13 0 chr13 35922497 35922653 -83822245 + FRAM SINE Alu 1 158 -18 1628 142 22 41 chr13 35922918 35923234 -83821664 - L1MC1 LINE L1 -1 6332 6023 362 332 164 0 chr13 35924044 35924252 -83820646 + MIR SINE MIR 2 243 -19 426 309 46 7 chr13 35925150 35925302 -83819596 + MIR SINE MIR 48 205 -57 965 269 28 8 chr13 35925571 35925949 -83818949 - LTR16A LTR ERVL -9 441 27 237 235 0 0 chr13 35925984 35926035 -83818863 - L3 LINE CR1 -192 1385 1335 342 258 45 0 chr13 35926133 35926265 -83818633 + (CATATA)n Simple_repeat Simple_repeat 2 139 0 477 272 66 33 chr13 35926353 35926566 -83818332 - L2 LINE L2 -947 2367 2148 438 300 69 6 chr13 35926636 35926796 -83818102 + Charlie8 DNA MER1_type 79 248 -2169 207 0 0 0 chr13 35926889 35926912 -83817986 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2209 41 0 0 chr13 35926912 35927179 -83817719 - L1PA5 LINE L1 -11 6143 5877 2173 93 3 23 chr13 35927299 35927601 -83817297 - AluSq SINE Alu -17 296 1 396 263 91 0 chr13 35927641 35927816 -83817082 - L2 LINE L2 -1404 1910 1720 640 226 0 0 chr13 35929025 35929140 -83815758 - FLAM_A SINE Alu -18 115 1 280 346 96 8 chr13 35929151 35929310 -83815588 - MER5A DNA MER1_type -3 186 6 213 261 0 31 chr13 35930165 35930230 -83814668 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 384 335 115 56 chr13 35930247 35930516 -83814382 - L2 LINE L2 -17 3255 2971 227 279 16 0 chr13 35930521 35930582 -83814316 - L1ME LINE L1 -451 5670 5609 47 53 0 0 chr13 35930583 35930658 -83814240 + AT_rich Low_complexity Low_complexity 1 75 0 2093 227 88 8 chr13 35930702 35931318 -83813580 - L1MC4 LINE L1 -140 7902 7238 500 156 161 13 chr13 35931333 35931474 -83813424 - L1MC4 LINE L1 -952 7074 6889 5610 169 26 8 chr13 35931884 35933932 -83810966 - L1PA16 LINE L1 -9 6157 4077 398 195 133 23 chr13 35934005 35934133 -83810765 - L1ME LINE L1 -422 5699 5558 1787 156 3 3 chr13 35934156 35934444 -83810454 - AluSx SINE Alu -24 288 1 367 289 128 36 chr13 35934462 35934909 -83809989 + L1MC/D LINE L1 4567 5054 -1092 1793 136 0 0 chr13 35934977 35935227 -83809671 + AluJb SINE Alu 14 263 -49 1141 224 211 9 chr13 35935281 35935727 -83809171 + L1MC/D LINE L1 5254 5789 -2019 777 263 14 30 chr13 35935843 35936075 -83808823 - L1MC4a LINE L1 -339 5822 5711 2204 105 7 3 chr13 35936075 35936371 -83808527 + AluSq SINE Alu 3 299 -14 777 263 14 30 chr13 35936371 35936402 -83808496 - L1MC4a LINE L1 -450 5711 5681 360 0 0 0 chr13 35937831 35937871 -83807027 + (CA)n Simple_repeat Simple_repeat 2 41 0 297 51 0 0 chr13 35937871 35937910 -83806988 + (CAT)n Simple_repeat Simple_repeat 1 39 0 326 332 91 53 chr13 35938598 35939052 -83805846 - L2 LINE L2 -5 3267 2795 189 0 0 0 chr13 35939169 35939190 -83805708 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 812 130 5 4 chr13 35939190 35939390 -83805508 - AluJb SINE Alu -33 279 2 270 231 96 39 chr13 35939972 35940076 -83804822 - LTR33A LTR ERVL -359 164 55 1979 189 7 55 chr13 35940264 35940698 -83804200 - MLT2D LTR ERVL -1 413 1 1586 213 135 77 chr13 35941543 35942157 -83802741 + MLT1E1 LTR MaLR 1 650 -4 1150 218 3 70 chr13 35942525 35942809 -83802089 + Tigger7 DNA MER2_type 2 266 -284 498 219 0 0 chr13 35942807 35942903 -83801995 + Tigger7 DNA MER2_type 2389 2484 -3 * 316 78 20 0 chr13 35943008 35943059 -83801839 - AluJo SINE Alu -1 301 250 1081 173 78 5 chr13 35943061 35943252 -83801646 - AluJo SINE Alu -107 205 1 2188 108 0 0 chr13 35943492 35943801 -83801097 - AluSc SINE Alu 0 312 4 314 377 9 9 chr13 35943821 35943927 -83800971 - MER91A DNA MER1_type -56 140 35 1045 127 61 0 chr13 35944190 35944355 -83800543 - MER58B DNA MER1_type 0 341 167 207 139 0 0 chr13 35946604 35946640 -83798258 + (T)n Simple_repeat Simple_repeat 1 36 0 798 178 51 13 chr13 35947559 35947716 -83797182 - FRAM SINE Alu -13 163 1 28 0 0 0 chr13 35948302 35948330 -83796568 + AT_rich Low_complexity Low_complexity 1 28 0 1368 232 146 31 chr13 35948452 35948905 -83795993 + MLT1D LTR MaLR 1 505 0 25 65 0 0 chr13 35948951 35948997 -83795901 + AT_rich Low_complexity Low_complexity 1 46 0 33 0 0 0 chr13 35949243 35949276 -83795622 + AT_rich Low_complexity Low_complexity 1 33 0 2054 163 20 45 chr13 35949975 35950375 -83794523 - MLT1B LTR MaLR 0 390 1 6511 42 4 0 chr13 35950681 35951468 -83793430 - L1PA5 LINE L1 -2 6152 5363 1228 302 19 29 chr13 35951468 35951846 -83793052 + LTR16C LTR ERVL 118 491 0 305 383 29 0 chr13 35951847 35952022 -83792876 + ERVL LTR ERVL 2 181 -4815 2507 119 3 13 chr13 35952081 35952460 -83792438 + THE1C LTR MaLR 1 375 0 275 247 26 13 chr13 35952846 35952923 -83791975 + ERVL LTR ERVL 596 673 -4323 311 309 105 42 chr13 35953167 35953358 -83791540 + ERVL LTR ERVL 783 985 -4011 4101 187 28 12 chr13 35953538 35954356 -83790542 + Tigger6a DNA MER2_type 24 854 -229 483 257 112 50 chr13 35954452 35954693 -83790205 + ERVL LTR ERVL 1718 1973 -3681 1758 191 2 72 chr13 35954730 35955149 -83789749 + MLT1B LTR MaLR 1 390 0 1108 310 104 19 chr13 35955157 35956017 -83788881 + ERVL LTR ERVL 2043 2978 -2018 1042 312 35 11 chr13 35956013 35956498 -83788400 + ERVL LTR ERVL 3863 4392 -1093 * 326 171 37 10 chr13 35956508 35956756 -83788142 + AluJo SINE Alu 12 302 0 451 324 43 61 chr13 35957243 35957687 -83787211 + ERVL LTR ERVL 4932 5367 -118 9123 161 4 40 chr13 35958410 35960184 -83784714 + L1P LINE L1 3575 5285 -861 1395 151 101 22 chr13 35961062 35961126 -83783772 - L1PB4 LINE L1 -7 6149 6091 2788 191 71 41 chr13 35961126 35961832 -83783066 - LTR8A LTR ERV1 0 727 1 1395 151 101 22 chr13 35961832 35962045 -83782853 - L1PB4 LINE L1 -65 6091 5850 3308 120 49 44 chr13 35962376 35962911 -83781987 + MER4D LTR ERV1 1 541 -362 1059 85 0 182 chr13 35962911 35963147 -83781751 - 7SK RNA RNA 0 193 1 3308 120 49 44 chr13 35963147 35963202 -83781696 + MER4D LTR ERV1 541 594 -309 1318 146 101 28 chr13 35963212 35963499 -83781399 + THE1C LTR MaLR 2 309 -66 1650 126 3 86 chr13 35963505 35963807 -83781091 + MER4E LTR ERV1 502 778 -1 2432 88 3 0 chr13 35964136 35964442 -83780456 - AluSx SINE Alu -5 307 1 341 211 172 72 chr13 35964664 35964844 -83780054 - MIR SINE MIR -9 253 56 765 228 29 68 chr13 35965124 35965155 -83779743 + LTR16C LTR ERVL 294 325 -166 2377 100 24 19 chr13 35965155 35965524 -83779374 + L1PA13 LINE L1 5790 6160 -3 765 228 29 68 chr13 35965524 35965698 -83779200 + LTR16C LTR ERVL 325 491 0 342 0 0 0 chr13 35966598 35966636 -83778262 + (CA)n Simple_repeat Simple_repeat 1 38 0 254 26 53 0 chr13 35966783 35966821 -83778077 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 15036 27 2 0 chr13 35967365 35969930 -83774968 - L1PA2 LINE L1 0 6155 3589 1062 191 31 12 chr13 35970039 35970296 -83774602 - L1MA7 LINE L1 -4 6287 6026 209 377 9 44 chr13 35970456 35970570 -83774328 + MIR SINE MIR 40 149 -59 314 276 60 17 chr13 35970665 35970781 -83774117 + L2 LINE L2 3193 3313 0 1639 156 48 0 chr13 35970785 35971074 -83773824 - MER58B DNA MER1_type 0 341 39 5786 58 46 3 chr13 35971078 35971819 -83773079 - LTR17 LTR ERV1 -7 773 1 510 122 12 0 chr13 35971900 35971982 -83772916 + L1PA16 LINE L1 6075 6157 -9 642 190 0 36 chr13 35972687 35972824 -83772074 - FLAM_A SINE Alu -1 132 1 612 368 85 29 chr13 35973193 35974049 -83770849 + L2 LINE L2 1777 2680 -634 615 279 40 40 chr13 35974126 35974356 -83770542 - MIR SINE MIR 0 262 30 207 0 0 0 chr13 35976518 35976541 -83768357 + (CAA)n Simple_repeat Simple_repeat 2 24 0 290 343 54 24 chr13 35977572 35977738 -83767160 + MER5B DNA MER1_type 3 173 -5 432 284 21 0 chr13 35978401 35978417 -83766481 - L1MA10 LINE L1 -1 6333 6318 2972 204 25 17 chr13 35978417 35979108 -83765790 - L1ME1 LINE L1 -11 6155 5460 1879 77 0 0 chr13 35979265 35979513 -83765385 - L1PA7 LINE L1 -5 6149 5902 1363 99 80 0 chr13 35979546 35979747 -83765151 + MER30 DNA MER1_type 14 230 0 578 296 38 23 chr13 35980644 35980906 -83763992 + HAL1b LINE L1 360 1666 -734 21 57 0 0 chr13 35981187 35981222 -83763676 + AT_rich Low_complexity Low_complexity 1 35 0 2482 170 21 6 chr13 35981259 35981729 -83763169 + L1MB1 LINE L1 5470 5946 -222 7635 252 18 23 chr13 35981747 35984164 -83760734 + L1P LINE L1 1708 4112 -2034 2156 100 147 44 chr13 35984277 35984714 -83760184 + L1PA12 LINE L1 5708 6168 0 26 0 0 0 chr13 35984818 35984844 -83760054 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr13 35985025 35985069 -83759829 + AT_rich Low_complexity Low_complexity 1 44 0 280 373 121 25 chr13 35985302 35985398 -83759500 - L2 LINE L2 -337 2977 2892 1358 156 69 146 chr13 35985398 35985636 -83759262 - MLT1A2 LTR MaLR 0 374 178 276 30 0 0 chr13 35985636 35985669 -83759229 + (GA)n Simple_repeat Simple_repeat 2 34 0 1358 156 69 146 chr13 35985669 35985835 -83759063 - MLT1A2 LTR MaLR -196 178 1 280 373 121 25 chr13 35985835 35986210 -83758688 - L2 LINE L2 -422 2892 2461 7803 184 27 18 chr13 35987781 35988735 -83756163 + L1PA13 LINE L1 2954 3932 -2214 2030 134 0 3 chr13 35988735 35989048 -83755850 + AluSx SINE Alu 1 312 0 7803 184 27 18 chr13 35989048 35989760 -83755138 + L1PA13 LINE L1 3932 4636 -1510 3096 128 16 6 chr13 35989767 35990273 -83754625 + L1PA13 LINE L1 5649 6159 -4 208 299 104 0 chr13 35993135 35993212 -83751686 - L2 LINE L2 -4 3309 3225 1295 145 47 0 chr13 35993638 35993872 -83751026 - L1MA4A LINE L1 0 6303 6059 3739 185 26 49 chr13 35993878 35994791 -83750107 - L1MB7 LINE L1 0 6184 5293 5213 121 88 0 chr13 35994798 35995650 -83749248 - L1PA16 LINE L1 -9 6860 5995 427 39 0 0 chr13 35995650 35995702 -83749196 - AluSp/q SINE Alu -31 282 231 1139 201 19 8 chr13 35995813 35996081 -83748817 - L1PA16 LINE L1 -927 5922 5652 9447 168 48 12 chr13 35996084 35996851 -83748047 - L1PA16 LINE L1 -4293 2556 1818 180 0 0 0 chr13 35996851 35996871 -83748027 + (TA)n Simple_repeat Simple_repeat 2 21 0 9447 168 48 12 chr13 35996871 35998492 -83746406 - L1PA16 LINE L1 -5031 1818 2 1271 197 11 5 chr13 35998499 35998815 -83746083 - L1MB7 LINE L1 -812 5309 4992 26816 40 39 2 chr13 35998916 36002291 -83742607 - L1P LINE L1 -2646 3500 3 201 239 0 42 chr13 36002295 36002366 -83742532 + T-rich Low_complexity Low_complexity 5 72 0 275 271 47 0 chr13 36002529 36002636 -83742262 - L1ME LINE L1 -295 5875 5764 237 248 132 11 chr13 36002775 36002910 -83741988 - L1ME LINE L1 -758 5601 5437 390 283 91 20 chr13 36003004 36003202 -83741696 - L1ME LINE L1 -807 5339 5128 235 234 0 0 chr13 36003237 36003284 -83741614 - FRAM SINE Alu -11 152 106 525 180 0 0 chr13 36003396 36003485 -83741413 - FRAM SINE Alu -68 108 20 1009 168 55 0 chr13 36003492 36003712 -83741186 - L1MB2 LINE L1 -2 6169 5938 29 0 0 0 chr13 36003712 36003741 -83741157 + AT_rich Low_complexity Low_complexity 1 29 0 3058 135 57 4 chr13 36003745 36004270 -83740628 - L1PA16 LINE L1 -22 6144 5592 1879 207 30 17 chr13 36004264 36004733 -83740165 - L1 LINE L1 -1446 4700 4226 * 406 304 52 36 chr13 36055087 36055658 -83689240 + L1ME3A LINE L1 5260 5873 -297 186 43 0 0 chr13 36055702 36055725 -83689173 + (TA)n Simple_repeat Simple_repeat 2 24 0 7407 42 0 0 chr13 36055740 36056871 -83688027 + L1PA5 LINE L1 5020 6150 -4 2375 60 0 0 chr13 36056984 36057300 -83687598 - AluY SINE Alu 0 316 1 217 227 27 13 chr13 36057614 36057689 -83687209 + (TA)n Simple_repeat Simple_repeat 2 77 0 27 49 0 0 chr13 36057885 36057926 -83686972 + AT_rich Low_complexity Low_complexity 1 41 0 676 307 98 17 chr13 36058391 36059033 -83685865 - L1MEc LINE L1 -4683 1713 1020 21 71 0 0 chr13 36060561 36060603 -83684295 + AT_rich Low_complexity Low_complexity 1 42 0 2543 167 34 85 chr13 36061508 36061612 -83683286 - LTR9 LTR ERV1 0 612 504 1858 122 7 11 chr13 36061612 36061919 -83682979 + AluSc SINE Alu 1 306 0 2543 167 34 85 chr13 36061919 36062458 -83682440 - LTR9 LTR ERV1 -108 504 1 429 20 0 0 chr13 36063709 36063759 -83681139 + (TG)n Simple_repeat Simple_repeat 2 51 0 854 265 43 12 chr13 36064044 36064297 -83680601 - MIR SINE MIR 0 262 2 2135 128 0 0 chr13 36064551 36064848 -83680050 - AluSx SINE Alu -15 297 1 227 357 22 0 chr13 36064848 36064940 -83679958 - MER5A DNA MER1_type -49 140 36 1132 82 0 0 chr13 36065498 36065633 -83679265 + AluSq/x SINE Alu 2 136 -177 2085 129 3 3 chr13 36065633 36065943 -83678955 + AluSx SINE Alu 1 310 -2 2262 50 50 20 chr13 36066302 36066600 -83678298 + AluY SINE Alu 1 307 -4 4555 138 5 19 chr13 36067888 36068644 -83676254 - L1MC1 LINE L1 -1 6612 5867 2123 111 10 10 chr13 36068649 36068956 -83675942 + AluSx SINE Alu 1 307 -5 450 127 0 0 chr13 36068956 36069027 -83675871 + (GA)n Simple_repeat Simple_repeat 1 71 0 1877 142 43 33 chr13 36069027 36069442 -83675456 - L1MC1 LINE L1 -742 5871 5449 5763 232 48 4 chr13 36069557 36071088 -83673810 - L1MC1 LINE L1 -1204 5222 3625 3947 216 31 35 chr13 36071596 36072961 -83671937 - L1MC1 LINE L1 -2792 3634 2265 2275 110 3 0 chr13 36072961 36073261 -83671637 + AluSp SINE Alu 1 301 -12 282 56 0 0 chr13 36073261 36073297 -83671601 + (TA)n Simple_repeat Simple_repeat 2 37 0 3947 216 31 35 chr13 36073297 36073531 -83671367 - L1MC1 LINE L1 -4159 2267 2038 967 164 223 50 chr13 36073544 36074027 -83670871 - LTR29 LTR ERV1 0 622 1 8646 184 77 44 chr13 36074028 36075453 -83669445 - L1MC1 LINE L1 -4413 2013 507 955 41 8 0 chr13 36075453 36075574 -83669324 + L1PA4 LINE L1 6034 6155 0 8646 184 77 44 chr13 36075574 36076092 -83668806 - L1MC1 LINE L1 -5919 507 7 223 278 22 0 chr13 36076740 36076830 -83668068 + T-rich Low_complexity Low_complexity 2 93 0 2127 105 14 3 chr13 36077126 36077422 -83667476 - AluSx SINE Alu -13 299 1 490 317 48 35 chr13 36077422 36077652 -83667246 + MLT1I LTR MaLR 176 408 -1 1655 259 111 9 chr13 36077972 36078529 -83666369 - L1ME3A LINE L1 -230 5940 5327 1209 188 150 11 chr13 36078531 36078797 -83666101 - MLT1D LTR MaLR -194 311 9 1570 219 33 22 chr13 36079321 36079682 -83665216 - MLT1A1 LTR MaLR 0 365 1 301 234 206 27 chr13 36079862 36079989 -83664909 + MIR3 SINE MIR 15 173 -89 397 288 66 54 chr13 36080109 36080508 -83664390 - MLT1K LTR MaLR -49 539 106 592 291 60 5 chr13 36081981 36082180 -83662718 + MIR SINE MIR 53 262 0 563 310 88 0 chr13 36082189 36082428 -83662470 + MIR SINE MIR 3 262 0 553 262 204 16 chr13 36083277 36083468 -83661430 - MIR SINE MIR -10 252 26 2306 152 31 14 chr13 36083560 36083981 -83660917 + MSTC LTR MaLR 1 428 0 355 308 56 85 chr13 36084126 36084516 -83660382 + L1M4 LINE L1 497 875 -5667 1440 265 134 3 chr13 36084585 36085218 -83659680 + L1M4 LINE L1 879 1594 -4948 27 49 0 0 chr13 36085270 36085311 -83659587 + AT_rich Low_complexity Low_complexity 1 41 0 774 253 37 81 chr13 36085341 36085776 -83659122 + L1M4 LINE L1 2140 2555 -4270 231 337 0 10 chr13 36085777 36085878 -83659020 + (TA)n Simple_repeat Simple_repeat 1 100 0 2535 244 67 12 chr13 36085891 36086790 -83658108 + L1M4 LINE L1 2588 3495 -3149 2234 97 7 0 chr13 36088142 36088440 -83656458 - AluSg SINE Alu -10 300 1 31 0 0 0 chr13 36088449 36088480 -83656418 + AT_rich Low_complexity Low_complexity 1 31 0 312 276 9 67 chr13 36088843 36088948 -83655950 + L2 LINE L2 3174 3272 0 1812 154 165 8 chr13 36089105 36089475 -83655423 - MSTA LTR MaLR 0 428 1 2072 131 3 10 chr13 36089809 36090123 -83654775 + AluSx SINE Alu 1 312 0 2161 179 26 21 chr13 36090341 36090771 -83654127 - MSTB1 LTR MaLR 0 432 1 2091 115 16 20 chr13 36090984 36091512 -83653386 + L1P4 LINE L1 5056 5582 -579 606 255 170 12 chr13 36091846 36092093 -83652805 - LTR33 LTR ERVL -235 286 1 23 33 0 0 chr13 36092487 36092517 -83652381 + AT_rich Low_complexity Low_complexity 1 30 0 399 235 156 28 chr13 36092519 36092783 -83652115 + L1ME4a LINE L1 5332 5622 -499 358 277 71 13 chr13 36092804 36092959 -83651939 + L1ME4a LINE L1 5733 5896 -225 608 87 11 0 chr13 36093040 36093132 -83651766 + (TA)n Simple_repeat Simple_repeat 2 94 0 21 0 0 0 chr13 36093601 36093622 -83651276 + AT_rich Low_complexity Low_complexity 1 21 0 1757 196 57 40 chr13 36094195 36094650 -83650248 - MLT1C LTR MaLR -4 463 1 326 268 21 0 chr13 36094819 36094916 -83649982 - MER103 DNA DNA -1 165 67 1463 248 35 28 chr13 36096627 36097051 -83647847 + LTR40a LTR ERVL 1 427 -92 440 240 53 50 chr13 36097228 36097420 -83647478 - MLT1I LTR MaLR -2 407 266 443 276 80 72 chr13 36098070 36098441 -83646457 + L1M4 LINE L1 3190 3557 -2589 1946 178 87 12 chr13 36098441 36098868 -83646030 + MER65C LTR ERV1 1 459 -2 443 276 80 72 chr13 36098868 36098944 -83645954 + L1M4 LINE L1 3557 3631 -2515 1994 147 16 0 chr13 36098944 36099251 -83645647 - AluJo SINE Alu 0 312 1 443 276 80 72 chr13 36099251 36099371 -83645527 + L1M4 LINE L1 3631 3745 -2401 1622 242 80 54 chr13 36099383 36100105 -83644793 + Charlie2a DNA MER1_type 1604 2344 -518 42596 35 21 3 chr13 36100134 36106174 -83638724 + L1PA3 LINE L1 3 6153 -2 235 291 18 0 chr13 36106208 36106263 -83638635 - MER5A DNA MER1_type -127 62 7 555 297 137 5 chr13 36107226 36107445 -83637453 + MIR SINE MIR 14 261 -1 538 308 109 48 chr13 36107470 36107782 -83637116 - L2 LINE L2 0 3272 2942 232 273 15 15 chr13 36107955 36108021 -83636877 + L2 LINE L2 3206 3271 -1 896 148 23 115 chr13 36108880 36109097 -83635801 + MER67D LTR ERV1 1 197 -317 189 0 0 0 chr13 36109224 36109245 -83635653 + (A)n Simple_repeat Simple_repeat 1 21 0 193 50 25 50 chr13 36109802 36109842 -83635056 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 352 275 28 21 chr13 36110690 36110832 -83634066 + HAL1b LINE L1 55 197 -1151 250 245 0 0 chr13 36111926 36111979 -83632919 + L2 LINE L2 3253 3305 -8 1177 105 0 0 chr13 36113543 36113696 -83631202 + AluSx SINE Alu 1 153 -159 1376 201 38 100 chr13 36114925 36115007 -83629891 + MLT1C LTR MaLR 1 87 -380 1182 367 89 35 chr13 36115007 36115413 -83629485 + MSTA LTR MaLR 1 428 0 1376 201 38 100 chr13 36115413 36115436 -83629462 + MLT1C LTR MaLR 87 110 -357 2047 172 83 2 chr13 36115436 36115832 -83629066 + MSTA LTR MaLR 1 428 0 1376 201 38 100 chr13 36115832 36116212 -83628686 + MLT1C LTR MaLR 110 467 0 1931 99 102 3 chr13 36116409 36116692 -83628206 + AluSp SINE Alu 2 312 -1 347 307 112 57 chr13 36116827 36117176 -83627722 - L2 LINE L2 -675 2639 2272 2126 96 10 20 chr13 36118013 36118315 -83626583 + AluSq SINE Alu 1 299 -14 284 265 142 43 chr13 36119764 36120066 -83624832 - L1M4 LINE L1 -815 5829 5498 201 266 0 47 chr13 36120159 36120223 -83624675 - MIR SINE MIR -105 157 97 942 146 12 130 chr13 36120596 36120843 -83624055 + MER20 DNA MER1_type 2 219 0 2508 169 14 86 chr13 36120902 36121459 -83623439 + MLT2B1 LTR ERVL 1 517 -3 843 284 11 17 chr13 36122570 36122824 -83622074 - MIR SINE MIR -12 250 3 6207 74 6 28 chr13 36123817 36124685 -83620213 + SVA Other Other 535 1383 -3 9435 177 30 8 chr13 36124694 36126472 -83618426 - L1M4 LINE L1 -1287 5357 3531 1515 115 0 5 chr13 36126472 36126680 -83618218 + AluSp SINE Alu 107 313 0 9435 177 30 8 chr13 36126680 36126870 -83618028 - L1M4 LINE L1 -3113 3531 3347 3068 212 50 34 chr13 36126987 36127868 -83617030 - L1M4 LINE L1 -5009 1533 639 533 295 107 50 chr13 36129210 36129529 -83615369 - L2 LINE L2 -696 2618 2282 360 245 47 19 chr13 36129530 36129636 -83615262 + MER94 DNA DNA 1 109 -25 514 292 51 31 chr13 36129639 36129834 -83615064 - L2 LINE L2 -1014 2300 2102 21 57 0 0 chr13 36130004 36130039 -83614859 + AT_rich Low_complexity Low_complexity 1 35 0 351 211 0 0 chr13 36130198 36130269 -83614629 + MIR SINE MIR 139 209 -53 2634 88 8 0 chr13 36130292 36130644 -83614254 - THE1A LTR MaLR 0 355 1 24 32 0 0 chr13 36130658 36130689 -83614209 + AT_rich Low_complexity Low_complexity 1 31 0 403 269 134 17 chr13 36130689 36130808 -83614090 - FLAM_A SINE Alu 0 133 1 531 215 173 25 chr13 36130902 36131139 -83613759 - HAL1 LINE L1 -310 2197 1926 337 270 132 35 chr13 36131134 36131429 -83613469 - L1M4 LINE L1 -948 5198 4879 * 1134 264 64 30 chr13 36131571 36131977 -83612921 - HAL1 LINE L1 -613 1894 1475 667 278 137 38 chr13 36133042 36133517 -83611381 - HAL1 LINE L1 -1324 1183 662 352 323 54 27 chr13 36133628 36133761 -83611137 - HAL1 LINE L1 -2007 500 359 2384 78 0 0 chr13 36133761 36134056 -83610842 - AluY SINE Alu -16 295 1 352 323 54 27 chr13 36134056 36134108 -83610790 - HAL1 LINE L1 -2148 359 310 275 231 0 0 chr13 36134113 36134165 -83610733 + LTR30 LTR ERV1 1 52 -670 1532 111 193 182 chr13 36134165 36134688 -83610210 + LTR12 LTR ERV1 53 581 -133 203 399 54 14 chr13 36136722 36136870 -83608028 + L2 LINE L2 2906 3059 -213 254 174 43 43 chr13 36136929 36136998 -83607900 - MER116 DNA Mariner -4 76 8 24 53 0 0 chr13 36137349 36137387 -83607511 + AT_rich Low_complexity Low_complexity 1 38 0 275 348 57 8 chr13 36137576 36137820 -83607078 + L1ME LINE L1 5547 5802 -319 552 235 32 32 chr13 36138344 36138565 -83606333 - MER20B DNA MER1_type -30 753 533 1118 160 14 28 chr13 36139911 36140124 -83604774 + MER2 DNA MER2_type 1 210 -135 22 35 0 0 chr13 36140133 36140162 -83604736 + AT_rich Low_complexity Low_complexity 1 29 0 245 269 45 15 chr13 36140162 36140229 -83604669 + MER2 DNA MER2_type 269 337 -8 1210 145 36 0 chr13 36141552 36141773 -83603125 - L1MA8 LINE L1 -147 6144 5916 794 140 51 6 chr13 36141773 36141922 -83602976 + L1MA8 LINE L1 6124 6287 -4 1721 185 24 18 chr13 36142296 36142382 -83602516 - MER2 DNA MER2_type 0 344 260 2237 110 0 7 chr13 36142382 36142682 -83602216 + AluSx SINE Alu 1 298 -14 1721 185 24 18 chr13 36142682 36142936 -83601962 - MER2 DNA MER2_type -84 260 2 7016 170 158 43 chr13 36142938 36144512 -83600386 + MER52A LTR ERV1 1 1755 0 355 233 38 75 chr13 36144958 36145091 -83599807 + L2 LINE L2 3095 3222 -91 925 207 14 100 chr13 36145095 36145451 -83599447 - L1MA4 LINE L1 -2 6298 5980 319 360 20 28 chr13 36145514 36145767 -83599131 - L2 LINE L2 -1058 2256 2006 269 290 159 28 chr13 36147017 36147124 -83597774 + MIR SINE MIR 16 136 -72 293 296 227 8 chr13 36148310 36148442 -83596456 - MIR3 SINE MIR -10 198 38 427 328 31 13 chr13 36148750 36148979 -83595919 + L2 LINE L2 636 868 -2446 258 214 4 44 chr13 36149021 36149285 -83595613 + AluJo SINE Alu 1 282 -20 191 387 118 14 chr13 36149317 36149749 -83595149 + L2 LINE L2 976 1452 -1862 752 276 68 41 chr13 36149805 36150391 -83594507 - L1M4 LINE L1 -1175 4971 4370 979 332 98 33 chr13 36150524 36151096 -83593802 + L2 LINE L2 2368 2976 -338 348 220 220 10 chr13 36151098 36151198 -83593700 + L2 LINE L2 3190 3310 -3 1910 125 68 0 chr13 36151458 36151737 -83593161 - AluSx SINE Alu -14 298 1 321 318 70 23 chr13 36151747 36151876 -83593022 + L2 LINE L2 3171 3305 -8 28 0 0 0 chr13 36152734 36152762 -83592136 + AT_rich Low_complexity Low_complexity 1 28 0 279 79 0 0 chr13 36152910 36152948 -83591950 + (ATG)n Simple_repeat Simple_repeat 2 39 0 1675 264 30 6 chr13 36154041 36154542 -83590356 - L1M4 LINE L1 -1950 4196 3684 27 0 0 0 chr13 36154546 36154573 -83590325 + AT_rich Low_complexity Low_complexity 1 27 0 4373 193 16 33 chr13 36154575 36155593 -83589305 - L1MA8 LINE L1 -7 6284 5285 228 291 128 40 chr13 36155706 36155854 -83589044 + L2 LINE L2 2744 2904 -410 2626 43 0 0 chr13 36156089 36156393 -83588505 - AluY SINE Alu -7 304 1 2170 91 7 3 chr13 36156491 36156789 -83588109 + AluSq SINE Alu 12 310 -3 28 48 0 0 chr13 36157647 36157689 -83587209 + AT_rich Low_complexity Low_complexity 1 42 0 451 266 189 31 chr13 36158152 36158411 -83586487 - L2 LINE L2 0 3313 3014 1422 195 76 12 chr13 36158738 36159081 -83585817 + MLT1A1 LTR MaLR 1 365 0 255 292 104 0 chr13 36159848 36159944 -83584954 - MIR SINE MIR -38 224 119 393 349 77 40 chr13 36160082 36160526 -83584372 - L2 LINE L2 -1935 1379 920 2376 91 3 0 chr13 36160863 36161170 -83583728 + AluSg SINE Alu 1 308 -2 282 248 79 30 chr13 36161556 36161657 -83583241 + L2 LINE L2 3204 3309 -4 2375 262 88 52 chr13 36163249 36164661 -83580237 + HAL1 LINE L1 1022 2485 -22 596 169 17 8 chr13 36164663 36164781 -83580117 - AluJo SINE Alu -8 304 186 756 151 0 0 chr13 36164794 36164913 -83579985 - AluJo SINE Alu -192 120 2 32 26 0 0 chr13 36166210 36166249 -83578649 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr13 36167298 36167320 -83577578 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 36167383 36167406 -83577492 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr13 36167707 36167731 -83577167 + AT_rich Low_complexity Low_complexity 1 24 0 323 364 29 35 chr13 36168443 36168811 -83576087 + L2 LINE L2 2695 3056 -216 180 156 0 67 chr13 36169845 36169890 -83575008 - L2 LINE L2 0 3313 3272 247 270 70 9 chr13 36169996 36170111 -83574787 - L1MC4 LINE L1 -21 8021 7900 278 256 39 0 chr13 36170116 36170245 -83574653 + (TA)n Simple_repeat Simple_repeat 2 135 0 1811 221 86 60 chr13 36170248 36170926 -83573972 - L1MC4 LINE L1 -136 7906 7212 265 235 0 39 chr13 36171238 36171340 -83573558 + CT-rich Low_complexity Low_complexity 1 98 0 266 324 176 14 chr13 36171476 36171686 -83573212 + MIR SINE MIR 4 247 -15 184 358 46 28 chr13 36174217 36174326 -83570572 - L2 LINE L2 -12 3301 3191 616 195 0 16 chr13 36174521 36174649 -83570249 - MIR SINE MIR -6 256 131 298 270 146 0 chr13 36174907 36174996 -83569902 - MIR SINE MIR -147 115 14 1836 274 96 22 chr13 36178619 36179421 -83565477 - L1ME3A LINE L1 -38 6115 5255 225 0 0 0 chr13 36179510 36179535 -83565363 + (TG)n Simple_repeat Simple_repeat 2 26 0 1262 273 68 25 chr13 36179536 36179982 -83564916 - L1ME3A LINE L1 -1045 5084 4599 2233 115 0 3 chr13 36179982 36180277 -83564621 - AluSg SINE Alu -15 295 2 1262 273 68 25 chr13 36180277 36180496 -83564402 - L1ME3A LINE L1 -1530 4599 4391 2091 113 24 0 chr13 36180500 36180792 -83564106 - AluSx SINE Alu -13 299 1 1072 284 102 9 chr13 36180814 36181208 -83563690 - LTR16A LTR ERVL -2 455 7 2676 163 12 5 chr13 36181402 36181825 -83563073 - MSTB LTR MaLR 0 426 1 2277 207 32 98 chr13 36182062 36182783 -83562115 - LTR8 LTR ERV1 -18 673 1 441 212 122 14 chr13 36182868 36182889 -83562009 + L1M4 LINE L1 2902 2919 -3227 1563 173 0 4 chr13 36182889 36183143 -83561755 + AluJo SINE Alu 41 293 -19 441 212 122 14 chr13 36183143 36183343 -83561555 + L1M4 LINE L1 2919 3147 -2999 30 45 0 0 chr13 36183477 36183521 -83561377 + AT_rich Low_complexity Low_complexity 1 44 0 739 271 83 58 chr13 36183522 36183803 -83561095 - L1MEd LINE L1 -4576 1734 1461 2156 109 7 7 chr13 36183803 36184107 -83560791 - AluSx SINE Alu -8 304 1 739 271 83 58 chr13 36184107 36184734 -83560164 - L1MEd LINE L1 -4849 1461 758 182 313 60 0 chr13 36185415 36185482 -83559416 + L2 LINE L2 3201 3271 -1 553 324 22 0 chr13 36186100 36186285 -83558613 - MIR SINE MIR -14 248 60 31 96 0 0 chr13 36187366 36187460 -83557438 + AT_rich Low_complexity Low_complexity 1 94 0 21 57 0 0 chr13 36187511 36187546 -83557352 + AT_rich Low_complexity Low_complexity 1 35 0 526 280 36 68 chr13 36187571 36187821 -83557077 - MLT1J LTR MaLR -42 469 228 622 139 47 47 chr13 36187868 36187997 -83556901 - AluJb SINE Alu -2 310 182 966 114 8 0 chr13 36187997 36188129 -83556769 - AluSq/x SINE Alu -180 133 1 548 284 76 20 chr13 36188131 36188328 -83556570 - MLT1J LTR MaLR -296 215 8 1395 104 5 0 chr13 36189106 36189298 -83555600 + AluSg/x SINE Alu 114 306 -3 338 343 19 0 chr13 36189310 36189418 -83555480 + MER5A DNA MER1_type 79 188 -1 432 330 45 49 chr13 36190223 36190511 -83554387 + MLT1K LTR MaLR 166 452 -136 198 0 0 0 chr13 36190590 36190612 -83554286 + (T)n Simple_repeat Simple_repeat 1 22 0 333 0 0 0 chr13 36190629 36190666 -83554232 + (TG)n Simple_repeat Simple_repeat 2 38 0 333 303 67 17 chr13 36190756 36190875 -83554023 + L2 LINE L2 3180 3304 -9 649 315 68 64 chr13 36191750 36192268 -83552630 + MLT1L LTR MaLR 2 521 -94 2219 151 34 63 chr13 36193195 36193673 -83551225 + MLT2C2 LTR ERVL 1 464 0 195 42 0 0 chr13 36193806 36193830 -83551068 + (CA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr13 36195244 36195266 -83549632 + AT_rich Low_complexity Low_complexity 1 22 0 1597 276 3 11 chr13 36195605 36195971 -83548927 + L1PA15 LINE L1 1 363 -6424 5527 258 79 27 chr13 36196148 36199110 -83545788 - L1PA13 LINE L1 -3284 3513 377 * 12032 199 26 9 chr13 36199107 36202755 -83542143 + L1PA15 LINE L1 3109 6812 -4 2451 74 0 0 chr13 36202764 36203075 -83541823 + AluY SINE Alu 1 311 0 1163 175 52 22 chr13 36203682 36203978 -83540920 + MER67C LTR ERV1 1 309 -243 21 0 0 0 chr13 36204008 36204029 -83540869 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr13 36204381 36204414 -83540484 + (TG)n Simple_repeat Simple_repeat 2 34 0 2223 102 0 0 chr13 36204450 36204733 -83540165 - AluSq SINE Alu -29 284 2 519 191 227 12 chr13 36205017 36205317 -83539581 + LTR37A LTR ERV1 18 417 -9 2220 117 0 0 chr13 36205602 36205900 -83538998 + AluSq SINE Alu 1 298 -15 23 86 0 0 chr13 36206196 36206254 -83538644 + AT_rich Low_complexity Low_complexity 1 58 0 407 316 113 22 chr13 36206429 36206633 -83538265 + L1MC4a LINE L1 5326 5564 -606 2241 98 0 0 chr13 36206633 36206938 -83537960 - AluSq SINE Alu 0 305 1 407 316 113 22 chr13 36206938 36207007 -83537891 + L1MC4a LINE L1 5564 5625 -545 398 229 9 9 chr13 36207154 36207259 -83537639 + L1MC4a LINE L1 5732 5836 -1972 21 0 0 0 chr13 36207545 36207566 -83537332 + AT_rich Low_complexity Low_complexity 1 21 0 199 385 0 0 chr13 36207740 36207823 -83537075 + MIR SINE MIR 22 104 -158 195 269 131 117 chr13 36207972 36208117 -83536781 - L3b LINE CR1 -155 1428 1282 181 253 114 25 chr13 36208147 36208226 -83536672 - L3 LINE CR1 -159 1418 1333 254 263 13 115 chr13 36210325 36210481 -83534417 + MER70-int LTR ERVL 2511 2650 -3004 390 331 39 39 chr13 36210872 36211180 -83533718 + MER70-int LTR ERVL 1796 2103 -2920 1169 202 10 26 chr13 36211444 36211751 -83533147 - L1MA6 LINE L1 -1 6299 5998 2041 236 52 62 chr13 36211987 36213111 -83531787 - L1 LINE L1 -3231 3151 2030 1344 174 50 129 chr13 36213563 36214177 -83530721 - L1M4c LINE L1 -2948 3434 2869 905 219 72 100 chr13 36214204 36214792 -83530106 - L1M4c LINE L1 -4200 2184 1510 1425 252 97 16 chr13 36215304 36215728 -83529170 - L1MC4 LINE L1 -1065 6977 6520 1927 154 99 3 chr13 36215728 36216060 -83528838 + MLT2D LTR ERVL 1 364 -50 291 143 63 16 chr13 36216127 36216190 -83528708 + MLT2D LTR ERVL 455 520 0 450 222 10 0 chr13 36216200 36216299 -83528599 - L1MC4a LINE L1 -1366 6442 6343 3223 242 72 13 chr13 36216327 36218184 -83526714 - L1ME2 LINE L1 -36 6128 4166 735 286 105 18 chr13 36218183 36218686 -83526212 - L1ME2 LINE L1 -2766 3380 2834 * 1515 142 46 0 chr13 36218715 36218997 -83525901 - L1MA8 LINE L1 -10 6281 5987 1132 152 20 0 chr13 36219004 36219208 -83525690 - L1MA8 LINE L1 -447 5853 5646 716 261 93 0 chr13 36219221 36219501 -83525397 - L1ME2 LINE L1 -3327 2819 2514 288 265 174 0 chr13 36219965 36220063 -83524835 + MIR SINE MIR 31 145 -63 281 380 6 25 chr13 36220353 36220511 -83524387 - MIR3 SINE MIR -24 184 30 1261 219 7 14 chr13 36221569 36222013 -83522885 + MLT1D LTR MaLR 5 503 -2 445 302 82 6 chr13 36222025 36222207 -83522691 + LTR16C LTR ERVL 296 491 0 698 244 43 158 chr13 36222653 36223242 -83521656 - L2 LINE L2 -129 3184 2659 208 231 19 0 chr13 36223245 36223297 -83521601 - L2 LINE L2 -1898 1416 1364 652 211 15 25 chr13 36223297 36223496 -83521402 - L2 LINE L2 -2419 895 699 266 238 83 12 chr13 36224012 36224096 -83520802 - MIR SINE MIR -86 176 87 679 237 30 112 chr13 36224138 36224433 -83520465 - Zaphod DNA AcHobo -3759 272 2 761 288 72 79 chr13 36224545 36225100 -83519798 - L2 LINE L2 -622 2692 2142 376 271 19 9 chr13 36225122 36225229 -83519669 + L2 LINE L2 2531 2638 -676 250 281 141 59 chr13 36225223 36225263 -83519635 - L2 LINE L2 -2816 498 463 * 1553 207 25 17 chr13 36225263 36225625 -83519273 - MLT1A1 LTR MaLR 0 365 1 250 281 141 59 chr13 36225625 36225840 -83519058 - L2 LINE L2 -2851 463 222 449 313 13 9 chr13 36226026 36226168 -83518730 - MER5A DNA MER1_type -1 188 32 187 351 27 0 chr13 36226199 36226273 -83518625 - L2 LINE L2 -43 3270 3195 29 0 0 0 chr13 36226329 36226358 -83518540 + AT_rich Low_complexity Low_complexity 1 29 0 543 284 53 62 chr13 36228399 36228624 -83516274 + MIR SINE MIR 28 250 -12 3857 129 20 22 chr13 36229692 36230328 -83514570 + MER41B LTR ERV1 1 635 0 4002 111 12 7 chr13 36230374 36230967 -83513931 + MER4A LTR ERV1 1 596 -4 23 0 0 0 chr13 36230983 36231006 -83513892 + AT_rich Low_complexity Low_complexity 1 23 0 772 234 121 0 chr13 36232148 36232379 -83512519 - MIR SINE MIR -3 259 1 22 70 0 0 chr13 36232489 36232532 -83512366 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr13 36232806 36232833 -83512065 + AT_rich Low_complexity Low_complexity 1 27 0 2161 122 3 0 chr13 36233417 36233712 -83511186 - AluSg SINE Alu -14 296 1 1784 97 48 87 chr13 36233761 36234070 -83510828 + AluSx SINE Alu 1 297 -15 213 356 55 6 chr13 36234133 36234296 -83510602 - MIR SINE MIR -6 256 86 291 310 49 21 chr13 36234536 36234678 -83510220 - MLT1K LTR MaLR -266 322 177 216 200 0 0 chr13 36234724 36234789 -83510109 + (TG)n Simple_repeat Simple_repeat 1 65 0 2460 61 10 0 chr13 36235480 36235776 -83509122 - AluY SINE Alu -12 299 1 2167 136 0 3 chr13 36236321 36236630 -83508268 - AluSq SINE Alu -5 308 1 1684 272 79 67 chr13 36236751 36237776 -83507122 - L2 LINE L2 -86 3227 2175 194 139 47 0 chr13 36237877 36237920 -83506978 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 271 330 80 0 chr13 36237923 36238011 -83506887 - L2 LINE L2 -5 3267 3173 4161 153 41 21 chr13 36238034 36238676 -83506222 + Tigger1 DNA MER2_type 1 664 -1754 1958 146 10 0 chr13 36238676 36238977 -83505921 - AluJb SINE Alu -8 304 1 4161 153 41 21 chr13 36238977 36239132 -83505766 + Tigger1 DNA MER2_type 664 814 -1604 15988 219 38 17 chr13 36239141 36242544 -83502354 + L1PA15 LINE L1 16 3345 -4258 405 39 0 0 chr13 36242544 36242595 -83502303 + (CA)n Simple_repeat Simple_repeat 2 52 0 15988 219 38 17 chr13 36242595 36246338 -83498560 + L1PA15 LINE L1 3345 7599 -4 8306 134 28 11 chr13 36246350 36247757 -83497141 + Tigger1 DNA MER2_type 802 2231 -187 33 25 0 0 chr13 36247847 36247887 -83497011 + AT_rich Low_complexity Low_complexity 1 40 0 1970 138 47 26 chr13 36247897 36248282 -83496616 - L1MA4 LINE L1 -8 6292 5900 955 151 75 0 chr13 36248284 36248470 -83496428 + Tigger1 DNA MER2_type 2217 2416 -2 21 0 0 0 chr13 36249810 36249831 -83495067 + AT_rich Low_complexity Low_complexity 1 21 0 2015 155 0 3 chr13 36249844 36250141 -83494757 - AluSx SINE Alu -16 296 1 956 189 25 45 chr13 36250875 36251119 -83493779 - MLT1A1 LTR MaLR -126 239 1 2360 98 0 0 chr13 36251738 36252033 -83492865 + AluSg SINE Alu 1 295 -15 2031 67 0 4 chr13 36252773 36253040 -83491858 + L1PA7 LINE L1 5876 6141 -13 709 209 21 38 chr13 36253056 36253295 -83491603 + L1MB8 LINE L1 5927 6161 -17 475 311 66 6 chr13 36254919 36255102 -83489796 + MIR SINE MIR 9 202 -60 911 237 37 12 chr13 36255472 36255927 -83488971 + LTR55 LTR ERV 1 533 -15 1325 175 0 31 chr13 36255937 36256168 -83488730 + L1MA3 LINE L1 6029 6251 -54 2131 123 3 10 chr13 36256168 36256468 -83488430 + AluSx SINE Alu 2 299 -13 1325 175 0 31 chr13 36256468 36256522 -83488376 + L1MA3 LINE L1 6251 6305 0 417 310 222 28 chr13 36256525 36257027 -83487871 - L2 LINE L2 -459 2855 2451 1461 179 68 20 chr13 36257027 36257323 -83487575 + AluJo SINE Alu 1 310 -2 417 310 222 28 chr13 36257323 36257636 -83487262 - L2 LINE L2 -863 2451 1882 261 229 48 24 chr13 36258747 36258830 -83486068 - MIR SINE MIR -66 196 112 933 219 104 1 chr13 36259085 36259443 -83485455 + Charlie4a DNA MER1_type 51 490 -18 2139 93 0 60 chr13 36259448 36259775 -83485123 - AluSq SINE Alu 0 309 1 602 284 91 24 chr13 36259999 36260253 -83484645 + LTR16A LTR ERVL 114 384 -66 661 131 85 26 chr13 36260275 36260428 -83484470 - MER53 DNA DNA -27 162 1 286 169 0 46 chr13 36260428 36260488 -83484410 + LTR16A LTR ERVL 394 450 0 628 217 43 0 chr13 36260943 36261058 -83483840 - FLAM_A SINE Alu -13 120 1 25 31 0 0 chr13 36261801 36261833 -83483065 + AT_rich Low_complexity Low_complexity 1 32 0 267 103 0 0 chr13 36262155 36262194 -83482704 + (TG)n Simple_repeat Simple_repeat 2 40 0 336 176 0 0 chr13 36263267 36263335 -83481563 + CT-rich Low_complexity Low_complexity 5 72 0 262 276 86 112 chr13 36263452 36263684 -83481214 + MIR SINE MIR 10 235 -27 245 264 64 96 chr13 36263839 36263964 -83480934 + MIR SINE MIR 52 172 -90 348 24 0 0 chr13 36264330 36264371 -83480527 + (GA)n Simple_repeat Simple_repeat 2 42 0 546 256 61 17 chr13 36264574 36264754 -83480144 + MIR SINE MIR 1 188 -74 2247 120 73 40 chr13 36264763 36265161 -83479737 + L1MA7 LINE L1 5825 6241 -50 2046 92 28 3 chr13 36265161 36265445 -83479453 + AluSx SINE Alu 1 291 -21 2247 120 73 40 chr13 36265445 36265497 -83479401 + L1MA7 LINE L1 6241 6290 -1 204 217 0 22 chr13 36265516 36265562 -83479336 + MIR SINE MIR 186 230 -32 27 29 0 0 chr13 36265573 36265607 -83479291 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 36266450 36266474 -83478424 + AT_rich Low_complexity Low_complexity 1 24 0 1764 196 70 62 chr13 36266638 36267139 -83477759 - MLT1D LTR MaLR 0 505 1 21630 145 19 35 chr13 36267335 36270048 -83474850 + L1M1 LINE L1 22 2776 -4789 561 26 0 26 chr13 36270048 36270126 -83474772 + L1PA4 LINE L1 6080 6155 0 21630 145 19 35 chr13 36270126 36271929 -83472969 + L1M1 LINE L1 2776 4453 -3112 4054 89 16 0 chr13 36271929 36272498 -83472400 + L1PB1 LINE L1 5571 6151 0 21630 145 19 35 chr13 36272498 36272957 -83471941 + L1M1 LINE L1 4453 4918 -2647 1339 284 266 20 chr13 36273713 36274708 -83470190 - L2 LINE L2 -113 3200 1858 2274 144 5 14 chr13 36274708 36275077 -83469821 - MER47A DNA MER2_type 0 366 1 1339 284 266 20 chr13 36275077 36275264 -83469634 - L2 LINE L2 -1455 1858 1718 186 43 0 0 chr13 36276398 36276421 -83468477 + (CAA)n Simple_repeat Simple_repeat 2 24 0 263 365 153 5 chr13 36276476 36276698 -83468200 - MIR SINE MIR -2 260 6 233 293 27 27 chr13 36277110 36277185 -83467713 + MIR SINE MIR 8 82 -180 1485 202 3 16 chr13 36277598 36277905 -83466993 - AluJb SINE Alu -9 303 1 201 158 0 0 chr13 36277948 36277986 -83466912 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 34 55 0 0 chr13 36277993 36278048 -83466850 + AT_rich Low_complexity Low_complexity 1 55 0 246 322 0 8 chr13 36279221 36279339 -83465559 + GA-rich Low_complexity Low_complexity 3 119 0 281 326 81 8 chr13 36279351 36279835 -83465063 + L1M4 LINE L1 2138 2656 -3490 * 369 289 32 16 chr13 36279830 36280020 -83464878 + L1ME4a LINE L1 5759 5951 -219 2387 195 53 29 chr13 36280082 36280666 -83464232 + L1ME1 LINE L1 5549 6146 -20 24 77 0 0 chr13 36280853 36280905 -83463993 + AT_rich Low_complexity Low_complexity 1 52 0 691 245 88 10 chr13 36281790 36281842 -83463056 - MLT2F LTR ERVL -2 661 614 266 87 22 0 chr13 36281842 36281888 -83463010 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 691 245 88 10 chr13 36281888 36282039 -83462859 - MLT2F LTR ERVL -49 614 442 3060 226 57 12 chr13 36282039 36283293 -83461605 + L1MB7 LINE L1 4864 6175 -9 1087 227 74 35 chr13 36283309 36283669 -83461229 - MLT2F LTR ERVL -215 448 4 4571 139 51 93 chr13 36283797 36283946 -83460952 - L1MA9 LINE L1 0 6312 6158 402 138 0 0 chr13 36283946 36284011 -83460887 - AluS SINE Alu -15 294 230 4571 139 51 93 chr13 36284011 36285283 -83459615 - L1MA9 LINE L1 -154 6158 4904 4218 247 154 40 chr13 36285281 36285802 -83459096 - L1MA9 LINE L1 -1457 4689 4229 * 322 118 0 0 chr13 36285802 36285853 -83459045 - Alu SINE Alu 0 300 250 4218 247 154 40 chr13 36285853 36286761 -83458137 - L1MA9 LINE L1 -1917 4229 3015 2135 103 7 7 chr13 36286761 36287053 -83457845 - AluSp SINE Alu -21 292 1 4218 247 154 40 chr13 36287053 36287153 -83457745 - L1MA9 LINE L1 -3131 3015 2928 24 0 0 0 chr13 36287324 36287348 -83457550 + AT_rich Low_complexity Low_complexity 1 24 0 310 210 169 40 chr13 36287369 36287493 -83457405 + L1ME4a LINE L1 5982 6121 0 909 130 0 0 chr13 36288738 36288869 -83456029 - FLAM_C SINE Alu -2 131 1 227 283 0 0 chr13 36289169 36289222 -83455676 + L3 LINE CR1 1524 1576 -1 690 290 108 58 chr13 36289339 36289767 -83455131 - MLT1J LTR MaLR -18 493 45 273 57 0 0 chr13 36289804 36289839 -83455059 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 207 146 0 0 chr13 36289845 36289886 -83455012 + (CA)n Simple_repeat Simple_repeat 2 42 0 337 330 74 11 chr13 36290055 36290231 -83454667 + MIR SINE MIR 62 248 -14 2080 107 3 17 chr13 36290387 36290687 -83454211 + AluSq SINE Alu 1 296 -17 279 265 48 12 chr13 36290698 36290781 -83454117 + MIR SINE MIR 73 158 -104 326 305 144 6 chr13 36290902 36291076 -83453822 - MIR SINE MIR -42 220 23 2614 193 41 7 chr13 36291728 36292268 -83452630 - MER74A LTR ERVL 0 558 1 491 333 56 0 chr13 36292571 36292733 -83452165 + MIR3 SINE MIR 32 202 -6 22 0 0 0 chr13 36293467 36293489 -83451409 + AT_rich Low_complexity Low_complexity 1 22 0 206 254 0 17 chr13 36294281 36294340 -83450558 - MIR3 SINE MIR -48 160 103 282 322 82 67 chr13 36294365 36294756 -83450142 - MLT1K LTR MaLR -190 398 2 336 303 76 8 chr13 36295367 36295486 -83449412 + L2 LINE L2 3186 3312 -1 3264 101 24 0 chr13 36298764 36299229 -83445669 - L1PA13 LINE L1 -6 6157 5682 273 293 39 72 chr13 36299547 36299728 -83445170 - LTR33 LTR ERVL -24 497 323 1955 124 0 0 chr13 36300132 36300405 -83444493 + AluSc SINE Alu 1 273 -36 2057 164 91 30 chr13 36300909 36301347 -83443551 + MLT1C LTR MaLR 3 467 0 2252 62 51 20 chr13 36302808 36303100 -83441798 - AluSp SINE Alu -11 302 2 1874 170 13 0 chr13 36303742 36304048 -83440850 - AluJb SINE Alu 0 312 3 207 0 0 0 chr13 36304549 36304572 -83440326 + (CA)n Simple_repeat Simple_repeat 2 24 0 1540 269 150 19 chr13 36304808 36305728 -83439170 - L1MC4 LINE L1 -51 7991 6951 8275 209 30 18 chr13 36305740 36306597 -83438301 - L1MB2 LINE L1 -8 6163 5318 189 0 0 0 chr13 36306597 36306618 -83438280 + (TTG)n Simple_repeat Simple_repeat 1 21 0 8275 209 30 18 chr13 36306618 36306639 -83438259 - L1MB2 LINE L1 -853 5318 5299 7116 37 0 0 chr13 36306639 36307759 -83437139 - L1PA3 LINE L1 0 6155 5017 8275 209 30 18 chr13 36307759 36308506 -83436392 - L1MB2 LINE L1 -872 5299 4563 2089 186 56 0 chr13 36308506 36308915 -83435983 - MSTB1 LTR MaLR 0 432 1 8275 209 30 18 chr13 36308915 36310215 -83434683 - L1MB2 LINE L1 -1608 4563 3198 230 286 0 0 chr13 36310961 36311017 -83433881 - L2 LINE L2 -493 2821 2766 31 68 0 0 chr13 36311520 36311579 -83433319 + AT_rich Low_complexity Low_complexity 1 59 0 29 47 0 0 chr13 36311809 36311852 -83433046 + AT_rich Low_complexity Low_complexity 1 43 0 992 240 123 10 chr13 36312023 36312331 -83432567 + LTR16B LTR ERVL 116 458 -6 321 270 110 67 chr13 36312690 36313046 -83431852 + L1ME LINE L1 604 974 -5096 22 56 0 0 chr13 36313423 36313459 -83431439 + AT_rich Low_complexity Low_complexity 1 36 0 1174 249 186 40 chr13 36314081 36314635 -83430263 + MLT1E1 LTR MaLR 1 635 -19 1195 213 26 96 chr13 36314636 36315115 -83429783 + MLT2B3 LTR ERVL 1 451 -2 445 290 62 31 chr13 36315121 36315345 -83429553 + L1ME LINE L1 2355 2585 -3495 523 271 103 58 chr13 36315348 36315658 -83429240 - MER46C DNA MER2_type -6 332 9 236 219 0 27 chr13 36315745 36315818 -83429080 + L1ME LINE L1 2719 2789 -3291 297 0 0 0 chr13 36315977 36316010 -83428888 + (CA)n Simple_repeat Simple_repeat 2 34 0 458 283 117 60 chr13 36316067 36316621 -83428277 - L1MDa LINE L1 -5800 740 155 1902 68 0 0 chr13 36316621 36316857 -83428041 - LTR12 LTR ERV1 0 714 479 5496 93 54 4 chr13 36316858 36317641 -83427257 - LTR12 LTR ERV1 -4 822 1 290 309 59 0 chr13 36317641 36317777 -83427121 - L1MDa LINE L1 -6382 158 15 706 145 60 177 chr13 36318100 36318348 -83426550 - MER20 DNA MER1_type 0 219 1 2040 178 71 57 chr13 36319780 36319879 -83425019 - MER67D LTR ERV1 0 514 418 1653 161 0 0 chr13 36319879 36320153 -83424745 + L1PA13 LINE L1 5878 6151 -12 2040 178 71 57 chr13 36320153 36320560 -83424338 - MER67D LTR ERV1 -96 418 1 327 344 78 0 chr13 36320605 36320733 -83424165 - MIR SINE MIR -84 178 41 341 140 0 0 chr13 36322895 36322945 -83421953 - AluS SINE Alu -228 74 25 1787 100 0 0 chr13 36322945 36323176 -83421722 + AluSg/x SINE Alu 80 310 0 24 53 0 0 chr13 36323207 36323245 -83421653 + AT_rich Low_complexity Low_complexity 1 38 0 2045 150 144 0 chr13 36323390 36323764 -83421134 + MSTC LTR MaLR 1 428 0 1644 116 0 0 chr13 36325617 36325842 -83419056 - AluSg/x SINE Alu 0 312 88 622 223 173 21 chr13 36326428 36326804 -83418094 - MLT1J LTR MaLR -40 471 24 2101 112 11 0 chr13 36328654 36328940 -83415958 + AluSg SINE Alu 9 297 -13 2222 107 72 20 chr13 36329601 36329947 -83414951 - THE1B LTR MaLR 0 364 1 216 184 0 0 chr13 36330704 36330742 -83414156 + (CA)n Simple_repeat Simple_repeat 1 38 0 186 316 31 92 chr13 36331978 36332076 -83412822 - MIR SINE MIR -64 144 53 308 348 0 0 chr13 36332378 36332447 -83412451 - L3 LINE CR1 -95 1482 1414 210 37 0 0 chr13 36332464 36332491 -83412407 + (TTTAG)n Simple_repeat Simple_repeat 3 29 0 423 323 79 37 chr13 36332575 36332953 -83411945 + MLT1K LTR MaLR 137 530 -58 362 372 105 34 chr13 36333045 36333633 -83411265 - L3 LINE CR1 -249 1328 699 27 0 0 0 chr13 36333657 36333684 -83411214 + AT_rich Low_complexity Low_complexity 1 27 0 204 67 0 0 chr13 36335546 36335576 -83409322 + (T)n Simple_repeat Simple_repeat 1 30 0 253 180 45 11 chr13 36335831 36335920 -83408978 + (TA)n Simple_repeat Simple_repeat 1 92 0 180 0 0 0 chr13 36337120 36337140 -83407758 + (TG)n Simple_repeat Simple_repeat 2 21 0 314 231 44 44 chr13 36337432 36337523 -83407375 - L2 LINE L2 -1 3312 3222 24 53 0 0 chr13 36337540 36337578 -83407320 + AT_rich Low_complexity Low_complexity 1 38 0 570 274 222 0 chr13 36338310 36338522 -83406376 + MIR SINE MIR 2 260 -2 438 254 25 8 chr13 36339239 36339361 -83405537 - LTR33 LTR ERVL -5 516 393 256 373 25 21 chr13 36339623 36339859 -83405039 - ERVL LTR ERVL -437 5327 5091 1148 286 63 34 chr13 36339915 36340359 -83404539 - ERVL LTR ERVL -1164 4600 4144 848 351 37 11 chr13 36340610 36340884 -83404014 - ERVL LTR ERVL -1975 3789 3501 1967 160 0 0 chr13 36340884 36341196 -83403702 - AluSx SINE Alu 0 312 1 848 351 37 11 chr13 36341196 36341297 -83403601 - ERVL LTR ERVL -2263 3501 3404 925 329 56 32 chr13 36341339 36342001 -83402897 - ERVL LTR ERVL -2382 3272 2595 26 30 0 0 chr13 36342523 36342556 -83402342 + AT_rich Low_complexity Low_complexity 1 33 0 1381 130 4 59 chr13 36342615 36342853 -83402045 + AluSg/x SINE Alu 74 298 -14 1402 155 19 0 chr13 36342916 36343174 -83401724 - L1MA9 LINE L1 0 6312 6050 378 254 11 39 chr13 36343180 36343253 -83401645 - L1M4 LINE L1 -3123 3023 2950 2342 50 7 23 chr13 36343253 36343554 -83401344 - AluY SINE Alu -15 296 1 378 254 11 39 chr13 36343554 36343661 -83401237 - L1M4 LINE L1 -3196 2950 2848 3894 195 35 60 chr13 36343704 36344553 -83400345 - L1MD1 LINE L1 -8 6234 5365 1609 146 27 42 chr13 36344553 36344889 -83400009 - L1MA8 LINE L1 -3 6288 5958 3894 195 35 60 chr13 36344889 36345921 -83398977 - L1MD1 LINE L1 -877 5365 4405 27 0 0 0 chr13 36346802 36346829 -83398069 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr13 36347053 36347083 -83397815 + AT_rich Low_complexity Low_complexity 1 30 0 6556 69 21 2 chr13 36347151 36348194 -83396704 + L1PA8 LINE L1 5105 6164 -8 290 317 201 0 chr13 36348362 36348526 -83396372 + MIR SINE MIR 8 204 -58 2482 74 0 0 chr13 36349649 36349959 -83394939 + AluY SINE Alu 2 311 0 11209 161 135 16 chr13 36350067 36352619 -83392279 + L1PBa LINE L1 115 2971 -3892 251 174 14 14 chr13 36352619 36352688 -83392210 + (TA)n Simple_repeat Simple_repeat 2 70 0 5954 99 18 9 chr13 36352699 36353810 -83391088 + L1PB1 LINE L1 5022 6150 -1 1339 216 14 0 chr13 36355328 36355611 -83389287 + MER63 DNA MER1_type 776 1062 0 200 322 85 0 chr13 36355986 36356045 -83388853 - L2 LINE L2 -1 3271 3208 354 299 81 88 chr13 36356543 36356988 -83387910 - HAL1b LINE L1 -699 649 208 21 82 0 0 chr13 36357305 36357354 -83387544 + AT_rich Low_complexity Low_complexity 1 49 0 403 313 16 16 chr13 36357963 36358091 -83386807 + MIR SINE MIR 16 143 -119 290 191 34 56 chr13 36359079 36359168 -83385730 - HAL1 LINE L1 -8 2499 2413 880 260 63 29 chr13 36359170 36359485 -83385413 - HAL1 LINE L1 -683 1824 1499 360 373 62 0 chr13 36359489 36359666 -83385232 - HAL1 LINE L1 -2213 294 107 197 264 42 42 chr13 36360022 36360094 -83384804 + L3 LINE CR1 996 1067 -510 27 62 0 0 chr13 36361481 36361529 -83383369 + AT_rich Low_complexity Low_complexity 1 48 0 1800 225 85 140 chr13 36362148 36362330 -83382568 - HsTC2 DNA Tc2 -744 1154 964 2066 125 41 0 chr13 36362330 36362625 -83382273 - AluSg SINE Alu -3 307 1 1800 225 85 140 chr13 36362625 36362886 -83382012 - HsTC2 DNA Tc2 -934 964 690 2181 110 0 0 chr13 36362886 36363176 -83381722 + AluSq SINE Alu 7 296 -17 1800 225 85 140 chr13 36363176 36363951 -83380947 - HsTC2 DNA Tc2 -1208 690 2 699 244 24 21 chr13 36364013 36364226 -83380672 - L1MB8 LINE L1 0 6178 5961 371 183 73 0 chr13 36366483 36366565 -83378333 - L1M4 LINE L1 -1223 4923 4836 340 254 23 39 chr13 36366562 36366692 -83378206 - L1MEc LINE L1 -3679 2536 2409 * 263 222 0 0 chr13 36366727 36366781 -83378117 - L1MEc LINE L1 -3794 2421 2368 1558 304 68 32 chr13 36366887 36367439 -83377459 - L1MEc LINE L1 -4307 2089 1483 2633 98 35 0 chr13 36367439 36367816 -83377082 - L1PA11 LINE L1 -10 6164 5775 1558 304 68 32 chr13 36367816 36368268 -83376630 - L1MEc LINE L1 -4913 1483 1049 503 375 13 15 chr13 36368363 36368758 -83376140 - L1MEc LINE L1 -5501 895 502 1805 159 10 10 chr13 36369072 36369374 -83375524 - AluSx SINE Alu -10 302 1 291 189 41 41 chr13 36370107 36370229 -83374669 + (TTATA)n Simple_repeat Simple_repeat 4 125 0 500 264 61 6 chr13 36371342 36371505 -83373393 - L1ME3A LINE L1 -8 6162 5991 630 207 17 6 chr13 36371807 36371981 -83372917 + CT-rich Low_complexity Low_complexity 2 177 0 309 261 45 9 chr13 36372676 36372787 -83372111 + L1MC4a LINE L1 5811 5925 -1883 896 209 23 6 chr13 36373044 36373216 -83371682 - MER41D LTR ERV1 -1 556 382 21 36 0 0 chr13 36374103 36374131 -83370767 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 36375590 36375619 -83369279 + AT_rich Low_complexity Low_complexity 1 29 0 654 310 57 36 chr13 36375840 36375863 -83369035 + L1MEc LINE L1 1072 1093 -5122 3254 178 25 2 chr13 36375863 36376452 -83368446 + LTR26 LTR ERV1 1 603 0 654 310 57 36 chr13 36376452 36377120 -83367778 + L1MEc LINE L1 1093 1742 -4473 2099 109 0 0 chr13 36377136 36377412 -83367486 + AluSx SINE Alu 22 297 -15 1529 202 108 19 chr13 36377764 36378125 -83366773 + MSTD LTR MaLR 4 396 0 26 30 0 0 chr13 36379104 36379137 -83365761 + AT_rich Low_complexity Low_complexity 1 33 0 2419 62 3 3 chr13 36380093 36380399 -83364499 - AluY SINE Alu -5 306 1 188 61 61 0 chr13 36380493 36380526 -83364372 + T-rich Low_complexity Low_complexity 2 36 0 194 210 0 113 chr13 36380801 36380863 -83364035 + MER5B DNA MER1_type 1 55 -123 186 427 10 0 chr13 36381091 36381187 -83363711 - L2 LINE L2 -190 3082 2986 1044 234 56 59 chr13 36381556 36381894 -83363004 - MLT1A1 LTR MaLR -28 337 1 195 107 0 0 chr13 36381894 36381922 -83362976 - L2 LINE L2 -695 2619 2592 534 341 166 26 chr13 36382119 36382571 -83362327 + L2 LINE L2 1644 2204 -1110 2101 93 0 36 chr13 36382571 36382873 -83362025 - AluY SINE Alu -20 291 1 534 341 166 26 chr13 36382873 36383027 -83361871 + L2 LINE L2 2204 2335 -979 654 222 0 0 chr13 36383030 36383147 -83361751 - MLT1A1 LTR MaLR -219 146 30 1571 177 64 3 chr13 36383461 36383744 -83361154 + AluJb SINE Alu 3 302 -10 185 35 69 0 chr13 36384378 36384407 -83360491 + A-rich Low_complexity Low_complexity 5 35 0 25 0 0 0 chr13 36385476 36385501 -83359397 + AT_rich Low_complexity Low_complexity 1 25 0 181 175 0 53 chr13 36387775 36387832 -83357066 + CT-rich Low_complexity Low_complexity 2 55 0 253 331 73 29 chr13 36388340 36388476 -83356422 + L2 LINE L2 3172 3313 0 467 67 45 22 chr13 36388592 36388681 -83356217 + GA-rich Low_complexity Low_complexity 2 92 0 472 258 16 39 chr13 36389590 36389718 -83355180 + L2 LINE L2 3189 3313 0 180 0 0 0 chr13 36390562 36390582 -83354316 + (TA)n Simple_repeat Simple_repeat 1 20 0 1366 210 19 0 chr13 36390770 36391041 -83353857 + MER58B DNA MER1_type 66 341 0 1506 201 3 23 chr13 36394762 36395061 -83349837 + AluJo SINE Alu 1 293 -19 1986 104 61 14 chr13 36396752 36397049 -83347849 - AluSx SINE Alu -1 311 1 207 0 0 0 chr13 36398003 36398026 -83346872 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 633 209 8 0 chr13 36398586 36398715 -83346183 + FLAM_C SINE Alu 6 135 -8 214 332 68 68 chr13 36402093 36402313 -83342585 - L2 LINE L2 -835 2479 2260 1748 48 0 9 chr13 36402448 36402675 -83342223 - L1PA4 LINE L1 0 6155 5931 21 36 0 0 chr13 36403439 36403467 -83341431 + AT_rich Low_complexity Low_complexity 1 28 0 721 360 76 11 chr13 36404086 36404466 -83340432 + L3 LINE CR1 563 967 -610 253 250 135 0 chr13 36405923 36406019 -83338879 - MIR SINE MIR -56 206 98 1884 110 45 17 chr13 36406033 36406324 -83338574 - AluSx SINE Alu -13 299 1 291 275 119 9 chr13 36407024 36407133 -83337765 - MIR3 SINE MIR -54 154 34 22 0 0 0 chr13 36409194 36409216 -83335682 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 36410695 36410719 -83334179 + AT_rich Low_complexity Low_complexity 1 24 0 1169 239 99 95 chr13 36415218 36415786 -83329112 - MLT1G LTR MaLR 0 590 21 13846 93 1 0 chr13 36415786 36418522 -83326376 + L1PA7 LINE L1 3413 6154 0 397 296 110 25 chr13 36419025 36419489 -83325409 - L1MEc LINE L1 -4460 1965 1368 216 308 26 51 chr13 36419560 36419638 -83325260 - L3 LINE CR1 -1441 136 61 2163 110 0 7 chr13 36420372 36420682 -83324216 - AluSc SINE Alu -1 308 1 225 339 9 18 chr13 36420816 36420925 -83323973 + L2 LINE L2 352 459 -2855 287 117 0 0 chr13 36420962 36421009 -83323889 - Alu SINE Alu -258 44 5 269 271 0 14 chr13 36421271 36421341 -83323557 + MER5B DNA MER1_type 1 69 -109 366 290 24 16 chr13 36422296 36422420 -83322478 + MIR SINE MIR 30 154 -108 490 207 0 0 chr13 36422952 36423034 -83321864 - AluS SINE Alu -230 82 1 1134 279 23 25 chr13 36423746 36424140 -83320758 - LTR52 LTR ERVL -5 416 24 207 0 0 0 chr13 36424950 36424973 -83319925 + (TG)n Simple_repeat Simple_repeat 1 23 0 311 391 75 0 chr13 36425651 36425812 -83319086 + MIR3 SINE MIR 30 202 -6 295 246 177 15 chr13 36426536 36426666 -83318232 + MIR SINE MIR 75 225 -37 2043 144 8 41 chr13 36426790 36427178 -83317720 + THE1C LTR MaLR 1 375 0 318 377 27 7 chr13 36429048 36429194 -83315704 - L2 LINE L2 -5 3308 3160 2838 13 0 0 chr13 36429293 36429604 -83315294 + AluYa5 SINE Alu 1 311 0 2030 140 10 3 chr13 36430064 36430371 -83314527 - AluSg SINE Alu -1 309 1 287 326 20 34 chr13 36430467 36430614 -83314284 + L2 LINE L2 313 457 -2857 2350 170 50 5 chr13 36431100 36431501 -83313397 + MSTC LTR MaLR 10 428 0 2212 118 0 0 chr13 36432711 36433008 -83311890 + AluSc SINE Alu 1 297 -12 1731 108 4 12 chr13 36433575 36433824 -83311074 + AluSx SINE Alu 61 307 -5 1685 160 41 28 chr13 36433873 36434261 -83310637 + L1MB8 LINE L1 5785 6177 -1 184 357 0 14 chr13 36434792 36434862 -83310036 + L2 LINE L2 3188 3256 -16 1866 175 112 5 chr13 36436185 36436568 -83308330 + MSTB LTR MaLR 1 424 -2 4135 214 46 33 chr13 36436618 36437619 -83307279 + L1MD2 LINE L1 5012 5999 -360 12545 159 47 17 chr13 36437619 36439965 -83304933 + Tigger1 DNA MER2_type 1 2418 0 4135 214 46 33 chr13 36439965 36440070 -83304828 + L1MD2 LINE L1 5999 6101 -258 222 91 0 0 chr13 36440070 36440103 -83304795 + (CA)n Simple_repeat Simple_repeat 2 34 0 4135 214 46 33 chr13 36440103 36440290 -83304608 + L1MD2 LINE L1 6101 6337 -22 190 159 87 101 chr13 36440389 36440458 -83304440 - MIR SINE MIR -66 142 75 267 31 0 0 chr13 36440666 36440698 -83304200 + (A)n Simple_repeat Simple_repeat 1 32 0 26 64 0 0 chr13 36440752 36440799 -83304099 + AT_rich Low_complexity Low_complexity 1 47 0 438 259 144 15 chr13 36442580 36442781 -83302117 + MIR SINE MIR 2 228 -34 24 0 0 0 chr13 36446536 36446560 -83298338 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 36446930 36446951 -83297947 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr13 36447347 36447393 -83297505 + AT_rich Low_complexity Low_complexity 1 46 0 214 356 167 6 chr13 36448864 36449038 -83295860 + MIR SINE MIR 3 204 -58 2855 184 17 31 chr13 36449527 36449912 -83294986 - L1M3f LINE L1 -4756 572 196 1917 138 27 3 chr13 36449912 36450210 -83294688 - AluSg SINE Alu -2 308 4 2855 184 17 31 chr13 36450210 36450404 -83294494 - L1M3f LINE L1 -5132 196 1 239 227 30 0 chr13 36451019 36451085 -83293813 - MLT1C LTR MaLR -167 300 233 737 174 7 14 chr13 36451137 36451275 -83293623 - MLT1C LTR MaLR -330 137 1 2339 93 0 10 chr13 36451771 36452083 -83292815 + AluY SINE Alu 1 309 -2 213 290 155 45 chr13 36454894 36455049 -83289849 + MIR3 SINE MIR 6 177 -31 2255 83 0 0 chr13 36455291 36455605 -83289293 - AluSc SINE Alu 0 315 2 2546 58 7 0 chr13 36456818 36457126 -83287772 + AluY SINE Alu 1 310 -1 33 43 0 0 chr13 36457559 36457606 -83287292 + AT_rich Low_complexity Low_complexity 1 47 0 314 61 20 0 chr13 36457927 36457976 -83286922 + (TC)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr13 36457978 36458001 -83286897 + (CA)n Simple_repeat Simple_repeat 2 24 0 289 276 61 0 chr13 36458171 36458269 -83286629 - L2 LINE L2 -33 3239 3136 197 359 60 26 chr13 36458799 36458916 -83285982 - L2 LINE L2 -204 3068 2948 2091 187 44 19 chr13 36459024 36459435 -83285463 + MSTB1 LTR MaLR 12 432 0 679 353 56 49 chr13 36459685 36460519 -83284379 - L2 LINE L2 -797 2517 1678 194 314 35 23 chr13 36460583 36460669 -83284229 - MIR SINE MIR 0 262 176 2130 116 3 3 chr13 36461951 36462245 -83282653 + AluSx SINE Alu 1 294 -18 198 313 0 0 chr13 36464854 36464902 -83279996 + L2 LINE L2 3251 3298 -15 207 0 0 0 chr13 36465233 36465256 -83279642 + (A)n Simple_repeat Simple_repeat 1 23 0 305 216 159 13 chr13 36465657 36465824 -83279074 + LTR40c LTR ERVL 198 384 -78 26 30 0 0 chr13 36466051 36466084 -83278814 + AT_rich Low_complexity Low_complexity 1 33 0 617 279 161 50 chr13 36466159 36466711 -83278187 + L2 LINE L2 2065 2689 -625 2082 118 0 3 chr13 36466711 36467000 -83277898 - AluSx SINE Alu -24 288 1 617 279 161 50 chr13 36467000 36467042 -83277856 + L2 LINE L2 2689 2725 -589 243 267 70 23 chr13 36467298 36467384 -83277514 - L2 LINE L2 -2 3270 3181 25 31 0 0 chr13 36468125 36468157 -83276741 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr13 36468552 36468595 -83276303 + AT_rich Low_complexity Low_complexity 1 43 0 1254 211 77 52 chr13 36469026 36469391 -83275507 + MLT1A2 LTR MaLR 1 374 0 201 378 109 29 chr13 36469974 36470286 -83274612 + L2 LINE L2 2926 3262 -10 259 343 38 59 chr13 36470503 36470621 -83274277 - MIR SINE MIR -64 144 40 203 171 0 24 chr13 36470695 36470736 -83274162 + GA-rich Low_complexity Low_complexity 4 43 0 561 252 77 13 chr13 36470755 36470910 -83273988 - MIR SINE MIR -43 219 55 448 315 33 5 chr13 36471551 36471735 -83273163 + MER5A DNA MER1_type 1 189 0 2811 52 0 0 chr13 36472120 36472469 -83272429 - L1PA5 LINE L1 -2 6152 5804 196 337 12 12 chr13 36473612 36473698 -83271200 - MIR3 SINE MIR -9 199 114 21 71 0 0 chr13 36474158 36474200 -83270698 + AT_rich Low_complexity Low_complexity 1 42 0 310 292 91 32 chr13 36474354 36474573 -83270325 + L1MCc LINE L1 24 255 -6168 361 295 36 30 chr13 36474584 36474750 -83270148 + L1MCc LINE L1 303 469 -5954 2136 114 0 0 chr13 36475520 36475824 -83269074 - AluSg SINE Alu 0 304 1 26 0 0 0 chr13 36476176 36476202 -83268696 + AT_rich Low_complexity Low_complexity 1 26 0 324 367 23 8 chr13 36477732 36477860 -83267038 - MIR3 SINE MIR -33 175 46 229 376 39 11 chr13 36478348 36478529 -83266369 + L2 LINE L2 3118 3303 -10 1671 157 77 7 chr13 36478868 36479155 -83265743 - AluSx SINE Alu -5 307 1 206 400 33 0 chr13 36479157 36479247 -83265651 - L3b LINE CR1 -49 1534 1442 2412 62 0 10 chr13 36479659 36479964 -83264934 - AluY SINE Alu -8 303 2 257 243 90 18 chr13 36481277 36481388 -83263510 + L1ME4a LINE L1 6000 6118 -3 23 0 0 0 chr13 36483615 36483638 -83261260 + AT_rich Low_complexity Low_complexity 1 23 0 312 218 0 0 chr13 36483697 36483784 -83261114 + CT-rich Low_complexity Low_complexity 3 89 0 203 398 21 0 chr13 36484305 36484398 -83260500 - MIR3 SINE MIR 0 208 114 2342 118 39 14 chr13 36484542 36484897 -83260001 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr13 36484950 36484991 -83259907 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr13 36485478 36485508 -83259390 + AT_rich Low_complexity Low_complexity 1 30 0 352 297 30 0 chr13 36486219 36486320 -83258578 + MER5A DNA MER1_type 9 112 -77 645 225 87 6 chr13 36486580 36486729 -83258169 - MER5A DNA MER1_type -2 187 21 1998 94 0 4 chr13 36486729 36486994 -83257904 - AluY SINE Alu -19 292 29 645 225 87 6 chr13 36486994 36487017 -83257881 - MER5A DNA MER1_type -168 21 1 763 309 40 16 chr13 36487570 36487819 -83257079 + MIR SINE MIR 6 260 -2 277 310 20 0 chr13 36487826 36487926 -83256972 + (CATATA)n Simple_repeat Simple_repeat 5 106 0 365 249 116 26 chr13 36487960 36488149 -83256749 + Charlie7 DNA MER1_type 400 605 -2007 1404 244 30 30 chr13 36490451 36490918 -83253980 - MLT1C LTR MaLR 0 467 1 2518 226 33 68 chr13 36492028 36492947 -83251951 + L1ME1 LINE L1 5279 6161 -5 1384 117 216 9 chr13 36492966 36493197 -83251701 + AluSg1 SINE Alu 1 279 -30 243 0 0 0 chr13 36493204 36493231 -83251667 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3916 158 22 7 chr13 36493408 36494147 -83250751 + L1MA8 LINE L1 5542 6291 0 2316 35 0 7 chr13 36495039 36495325 -83249573 - L1PA4 LINE L1 -1 6154 5871 315 244 9 61 chr13 36497190 36497305 -83247593 - L1MC4 LINE L1 -1320 6722 6614 1174 208 6 45 chr13 36500323 36500660 -83244238 - MER33 DNA MER1_type 0 324 1 297 294 14 82 chr13 36501573 36501719 -83243179 - MIR3 SINE MIR -11 197 62 332 117 0 17 chr13 36502593 36502653 -83242245 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 182 37 37 0 chr13 36502647 36502674 -83242224 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 * 2006 136 26 0 chr13 36502686 36502988 -83241910 - AluSx SINE Alu -2 310 1 473 329 80 13 chr13 36503015 36503240 -83241658 + L2 LINE L2 2652 2891 -423 434 285 75 25 chr13 36503361 36503561 -83241337 + L2 LINE L2 3104 3313 0 259 294 76 0 chr13 36504000 36504092 -83240806 + MIR SINE MIR 132 230 -32 1051 196 14 10 chr13 36506055 36506377 -83238521 + MLT1B LTR MaLR 1 390 0 2174 250 82 44 chr13 36506379 36507769 -83237129 + L1ME LINE L1 177 1595 -4620 957 172 0 0 chr13 36507773 36507924 -83236974 + AluJb SINE Alu 147 297 -15 506 280 50 15 chr13 36507924 36508124 -83236774 + L1ME LINE L1 1632 1838 -4558 610 307 70 20 chr13 36508290 36508635 -83236263 + L1ME LINE L1 1683 2044 -4352 340 136 168 101 chr13 36508637 36508755 -83236143 + MLT1E2 LTR MaLR 1 197 -457 822 242 44 16 chr13 36508813 36509152 -83235746 + MLT1D LTR MaLR 125 502 -3 33 0 0 0 chr13 36510147 36510180 -83234718 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr13 36510574 36510600 -83234298 + AT_rich Low_complexity Low_complexity 1 26 0 708 178 0 39 chr13 36510678 36510807 -83234091 - FLAM_C SINE Alu -16 127 4 366 331 50 7 chr13 36510966 36511105 -83233793 - MIR SINE MIR -115 147 3 387 277 72 63 chr13 36512300 36512426 -83232472 + L1MC4a LINE L1 5432 5555 -566 1700 166 20 20 chr13 36512426 36512728 -83232170 - AluJo SINE Alu -10 302 1 387 277 72 63 chr13 36512728 36513053 -83231845 + L1MC4a LINE L1 5555 5790 -331 5993 199 94 35 chr13 36513786 36514799 -83230099 + L1MB3 LINE L1 862 1814 -4568 2028 105 0 18 chr13 36514799 36515084 -83229814 + AluSg SINE Alu 11 290 -20 5993 199 94 35 chr13 36515084 36516715 -83228183 + L1MB3 LINE L1 1814 3667 -2715 3752 214 32 15 chr13 36516715 36518882 -83226016 + L1MB3 LINE L1 4024 6418 -1 186 43 0 0 chr13 36519457 36519480 -83225418 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 68 0 0 chr13 36519916 36519960 -83224938 + AT_rich Low_complexity Low_complexity 1 44 0 397 311 49 37 chr13 36520921 36521085 -83223813 - L2 LINE L2 -3 3269 3104 2547 202 55 10 chr13 36521244 36521840 -83223058 + L1 LINE L1 4043 4669 -1477 216 0 0 0 chr13 36521840 36521864 -83223034 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2547 202 55 10 chr13 36521864 36521885 -83223013 + L1 LINE L1 4669 4688 -1458 1452 211 0 0 chr13 36521885 36522150 -83222748 + AluJo SINE Alu 22 286 -26 349 236 21 14 chr13 36522157 36522258 -83222640 - MLT1H1 LTR MaLR -424 131 45 282 311 121 15 chr13 36522292 36522424 -83222474 - L2 LINE L2 -823 2491 2346 573 306 83 32 chr13 36522599 36522877 -83222021 - L2 LINE L2 -19 3294 3003 251 428 59 11 chr13 36522956 36523143 -83221755 + L2 LINE L2 2895 3090 -182 745 99 0 0 chr13 36523437 36523548 -83221350 + L1MA5A LINE L1 6179 6289 -8 29 0 0 0 chr13 36524687 36524716 -83220182 + AT_rich Low_complexity Low_complexity 1 29 0 1866 160 0 13 chr13 36525602 36525902 -83218996 - AluJb SINE Alu -16 296 1 284 68 0 23 chr13 36526091 36526135 -83218763 + (TAA)n Simple_repeat Simple_repeat 2 44 0 223 238 0 32 chr13 36526158 36526221 -83218677 - MIR SINE MIR -31 231 171 212 171 12 61 chr13 36526321 36526362 -83218536 + (TTTA)n Simple_repeat Simple_repeat 2 39 -40 1477 193 0 7 chr13 36526362 36526636 -83218262 - AluJb SINE Alu -32 280 9 212 171 12 61 chr13 36526636 36526676 -83218222 + (TTTA)n Simple_repeat Simple_repeat 39 79 0 497 255 33 71 chr13 36527345 36527529 -83217369 - MER5B DNA MER1_type -1 177 1 254 224 17 0 chr13 36527774 36527832 -83217066 + MER81 DNA DNA 24 82 -32 2184 117 0 0 chr13 36528374 36528673 -83216225 - AluSg SINE Alu -11 299 1 271 343 61 33 chr13 36530680 36530893 -83214005 + MIR SINE MIR 2 220 -42 199 326 153 68 chr13 36531264 36531558 -83213340 - L2 LINE L2 -5 3267 2949 526 111 0 0 chr13 36531996 36532068 -83212830 + FLAM SINE Alu 54 125 -18 287 259 155 17 chr13 36532414 36532530 -83212368 + L2 LINE L2 3173 3304 -9 21 0 0 0 chr13 36532582 36532603 -83212295 + AT_rich Low_complexity Low_complexity 1 21 0 779 250 0 27 chr13 36534063 36534247 -83210651 + MER8 DNA MER2_type 1 179 -60 387 194 0 0 chr13 36534223 36534285 -83210613 + MER2 DNA MER2_type 283 344 -1 * 234 91 0 0 chr13 36534288 36534321 -83210577 + (TA)n Simple_repeat Simple_repeat 2 34 0 264 278 0 0 chr13 36534321 36534411 -83210487 - L1MC4 LINE L1 -1339 6703 6614 263 333 76 56 chr13 36534432 36534576 -83210322 - MIR SINE MIR -111 151 5 1565 242 12 6 chr13 36536743 36537082 -83207816 - Tigger7 DNA MER2_type -2146 341 1 25 31 0 0 chr13 36537291 36537323 -83207575 + AT_rich Low_complexity Low_complexity 1 32 0 259 130 0 43 chr13 36537502 36537548 -83207350 + THE1B LTR MaLR 1 44 -320 21 0 0 0 chr13 36537592 36537613 -83207285 + AT_rich Low_complexity Low_complexity 1 21 0 1596 163 62 43 chr13 36537801 36538169 -83206729 + THE1C LTR MaLR 1 375 0 26 50 0 0 chr13 36538170 36538210 -83206688 + AT_rich Low_complexity Low_complexity 1 40 0 382 265 73 25 chr13 36538502 36538706 -83206192 - L1MC4 LINE L1 -836 7206 6993 * 983 285 71 16 chr13 36538697 36539150 -83205748 - L1ME3A LINE L1 -1 6169 5692 590 308 37 7 chr13 36539324 36539523 -83205375 - L1ME3A LINE L1 -2194 3952 3729 1868 44 0 0 chr13 36539523 36539750 -83205148 - L1PA7 LINE L1 -8 6146 5920 590 308 37 7 chr13 36539750 36539875 -83205023 - L1ME3A LINE L1 -2417 3729 3609 228 67 0 0 chr13 36540262 36540292 -83204606 + (GA)n Simple_repeat Simple_repeat 1 30 0 267 308 93 19 chr13 36540552 36540659 -83204239 - L2 LINE L2 -4 3268 3154 189 0 0 0 chr13 36540942 36540963 -83203935 + (TA)n Simple_repeat Simple_repeat 2 22 0 258 267 0 0 chr13 36541727 36541787 -83203111 - L2 LINE L2 -1 3271 3212 285 29 0 0 chr13 36541843 36541877 -83203021 + (CA)n Simple_repeat Simple_repeat 1 34 0 549 88 0 0 chr13 36542409 36542489 -83202409 + (GA)n Simple_repeat Simple_repeat 1 80 0 416 102 0 0 chr13 36543835 36543894 -83201004 - MADE1 DNA Mariner 0 80 22 596 227 64 7 chr13 36544149 36544290 -83200608 - AluJb SINE Alu -30 282 134 1306 146 150 33 chr13 36544290 36544564 -83200334 - AluJo SINE Alu -2 310 5 30 45 0 0 chr13 36544937 36544981 -83199917 + AT_rich Low_complexity Low_complexity 1 44 0 259 313 0 12 chr13 36545008 36545088 -83199810 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 222 118 0 0 chr13 36545122 36545156 -83199742 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 2153 123 0 7 chr13 36545391 36545701 -83199197 - AluSx SINE Alu -4 308 1 1061 232 108 30 chr13 36545812 36546282 -83198616 - Charlie4a DNA MER1_type 0 508 2 26 30 0 0 chr13 36546413 36546446 -83198452 + AT_rich Low_complexity Low_complexity 1 33 0 331 330 111 5 chr13 36547269 36547497 -83197401 + L1M4 LINE L1 3985 4236 -1910 286 332 112 6 chr13 36547852 36548068 -83196830 + L1MC/D LINE L1 4015 4252 -1894 340 312 172 41 chr13 36548961 36549403 -83195495 + L1MC/D LINE L1 5305 5804 -2004 1272 119 73 36 chr13 36550022 36550241 -83194657 - MER30 DNA MER1_type 0 230 4 564 283 130 26 chr13 36550586 36550816 -83194082 - MIR SINE MIR -3 259 6 915 19 0 0 chr13 36551594 36551700 -83193198 - L1PA3 LINE L1 -574 5581 5476 5191 20 0 0 chr13 36551700 36552296 -83192602 + L1PA3 LINE L1 5557 6152 -3 1400 98 0 5 chr13 36552308 36552511 -83192387 + HUERS-P3b LTR ERV1 4774 4975 -2443 325 330 25 0 chr13 36552603 36552721 -83192177 - L2 LINE L2 -1176 2138 2018 1488 300 167 24 chr13 36552727 36553488 -83191410 - L2 LINE L2 -1834 1480 611 35 71 0 0 chr13 36553704 36553774 -83191124 + AT_rich Low_complexity Low_complexity 1 70 0 414 261 83 85 chr13 36553813 36554318 -83190580 - L1M4 LINE L1 -1804 4342 3839 216 111 0 0 chr13 36556757 36556793 -83188105 + (TA)n Simple_repeat Simple_repeat 2 37 0 309 89 0 0 chr13 36558071 36558116 -83186782 + (CA)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr13 36558582 36558609 -83186289 + AT_rich Low_complexity Low_complexity 1 27 0 252 209 0 0 chr13 36559399 36559442 -83185456 - MIR SINE MIR -171 91 49 21 36 0 0 chr13 36559511 36559539 -83185359 + AT_rich Low_complexity Low_complexity 1 28 0 237 308 9 28 chr13 36559617 36559724 -83185174 + MIR SINE MIR 45 149 -113 234 310 10 50 chr13 36560830 36560930 -83183968 + L3 LINE CR1 1480 1575 -2 294 73 0 0 chr13 36560971 36561012 -83183886 + (TG)n Simple_repeat Simple_repeat 1 41 0 224 294 0 0 chr13 36561142 36561193 -83183705 - L2 LINE L2 -8 3264 3214 222 208 0 0 chr13 36561913 36561966 -83182932 + (TA)n Simple_repeat Simple_repeat 2 54 0 214 244 89 0 chr13 36562719 36562764 -83182134 + MIR SINE MIR 91 139 -69 332 259 28 19 chr13 36563061 36563169 -83181729 + MIR SINE MIR 128 236 -26 1068 165 30 0 chr13 36563924 36564124 -83180774 - L1PA13 LINE L1 0 6163 5958 24 32 0 0 chr13 36564641 36564672 -83180226 + AT_rich Low_complexity Low_complexity 1 31 0 815 92 77 15 chr13 36564825 36564955 -83179943 - L1PA11 LINE L1 0 6174 6037 2224 124 96 15 chr13 36566600 36566996 -83177902 - MSTA LTR MaLR 0 428 1 277 251 104 67 chr13 36567188 36567359 -83177539 - MIR SINE MIR -73 189 20 551 296 19 51 chr13 36567634 36567850 -83177048 + MIR SINE MIR 54 262 0 253 261 15 15 chr13 36567980 36568045 -83176853 + MIR3 SINE MIR 126 190 -18 727 247 44 6 chr13 36568335 36568517 -83176381 + MER5A DNA MER1_type 1 189 0 228 111 0 0 chr13 36572295 36572331 -83172567 + (A)n Simple_repeat Simple_repeat 1 36 0 266 0 29 0 chr13 36573275 36573309 -83171589 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 892 115 0 8 chr13 36573309 36573428 -83171470 - AluJb SINE Alu -192 120 1 27 62 0 0 chr13 36574138 36574186 -83170712 + AT_rich Low_complexity Low_complexity 1 48 0 29 47 0 0 chr13 36575105 36575148 -83169750 + AT_rich Low_complexity Low_complexity 1 43 0 34 55 0 0 chr13 36575621 36575676 -83169222 + AT_rich Low_complexity Low_complexity 1 55 0 396 0 0 0 chr13 36575709 36575753 -83169145 + (CA)n Simple_repeat Simple_repeat 2 45 0 511 210 17 0 chr13 36578244 36578363 -83166535 - MER3 DNA MER1_type -4 205 85 330 382 36 18 chr13 36578388 36578613 -83166285 + L2 LINE L2 2594 2822 -492 334 300 56 50 chr13 36579540 36579720 -83165178 + L1MEd LINE L1 1061 1241 -4878 787 303 50 3 chr13 36579986 36580286 -83164612 + MER110 LTR ERV1 166 479 -12 24 32 0 0 chr13 36580393 36580424 -83164474 + AT_rich Low_complexity Low_complexity 1 31 0 2272 101 0 13 chr13 36580529 36580836 -83164062 + AluSg SINE Alu 1 303 -7 547 329 114 30 chr13 36580938 36581548 -83163350 - L2 LINE L2 -15 3298 2633 282 56 0 0 chr13 36582140 36582176 -83162722 + (TG)n Simple_repeat Simple_repeat 1 36 0 181 292 46 15 chr13 36582262 36582327 -83162571 - L2 LINE L2 -665 2649 2583 1339 62 11 0 chr13 36582697 36582873 -83162025 - L1PA4 LINE L1 0 6155 5978 643 352 39 21 chr13 36583697 36584032 -83160866 + L3 LINE CR1 1228 1568 -9 21 36 0 0 chr13 36584493 36584521 -83160377 + AT_rich Low_complexity Low_complexity 1 28 0 242 109 0 43 chr13 36584708 36584754 -83160144 + L1MB7 LINE L1 6132 6175 -9 241 245 0 0 chr13 36585300 36585353 -83159545 - MIR SINE MIR -139 123 71 203 125 25 0 chr13 36585607 36585647 -83159251 + (CAA)n Simple_repeat Simple_repeat 2 42 0 384 210 145 16 chr13 36585664 36585788 -83159110 - MIR SINE MIR -37 225 86 834 156 14 0 chr13 36586221 36586362 -83158536 + FLAM_C SINE Alu 1 143 0 224 217 0 17 chr13 36586363 36586423 -83158475 + (TAAAG)n Simple_repeat Simple_repeat 2 60 0 1006 160 5 50 chr13 36586424 36586624 -83158274 + AluJb SINE Alu 122 312 0 2244 90 0 10 chr13 36588342 36588642 -83156256 - AluY SINE Alu -14 297 1 304 256 128 39 chr13 36588854 36589010 -83155888 + MIR SINE MIR 18 187 -75 856 232 6 0 chr13 36589608 36589776 -83155122 - FAM SINE Alu -6 169 1 21 82 0 0 chr13 36589943 36589992 -83154906 + AT_rich Low_complexity Low_complexity 1 49 0 232 326 22 11 chr13 36591220 36591309 -83153589 - L2 LINE L2 -240 3032 2943 3646 194 135 91 chr13 36591516 36592060 -83152838 - L1MD3 LINE L1 -10 7985 7466 416 224 52 35 chr13 36592060 36592176 -83152722 - MLT1F1 LTR MaLR -447 120 3 3646 194 135 91 chr13 36592176 36592908 -83151990 - L1MD3 LINE L1 -529 7466 6516 365 360 139 35 chr13 36592941 36593316 -83151582 - L2 LINE L2 0 3272 2859 640 308 66 9 chr13 36593583 36593810 -83151088 - MIR SINE MIR 0 262 23 911 339 27 25 chr13 36597869 36598270 -83146628 + LTR16A LTR ERVL 16 417 -33 2227 298 29 22 chr13 36600682 36601282 -83143616 + L1MEc LINE L1 78 687 -5709 1864 135 6 49 chr13 36601282 36601607 -83143291 + AluSx SINE Alu 1 311 -1 2227 298 29 22 chr13 36601607 36601863 -83143035 + L1MEc LINE L1 687 940 -5456 773 269 77 67 chr13 36601874 36602469 -83142429 + L1MEc LINE L1 1038 1638 -4758 5690 254 59 21 chr13 36602475 36604629 -83140269 + L1M4 LINE L1 2795 5031 -1115 5854 208 40 6 chr13 36604629 36607143 -83137755 + L1PA7 LINE L1 2087 4516 -1638 207 0 0 0 chr13 36607143 36607166 -83137732 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5854 208 40 6 chr13 36607166 36607791 -83137107 + L1PA7 LINE L1 4516 5119 -1035 5854 66 3 0 chr13 36607791 36608522 -83136376 + L1PA7 LINE L1 5411 6152 -2 5854 208 40 6 chr13 36608522 36608551 -83136347 + L1PA7 LINE L1 5119 6152 -2 5488 125 14 0 chr13 36608563 36609403 -83135495 + L1PA13 LINE L1 5312 6163 0 * 10747 201 22 1 chr13 36609394 36610753 -83134145 + L1PA15 LINE L1 3025 4448 -1713 378 0 0 0 chr13 36610753 36610795 -83134103 + (CA)n Simple_repeat Simple_repeat 1 42 0 10747 201 22 1 chr13 36610795 36611837 -83133061 + L1PA15 LINE L1 4448 5467 -694 2270 70 13 40 chr13 36611837 36612211 -83132687 - L1PA3 LINE L1 0 6155 5792 17085 39 6 0 chr13 36612321 36615211 -83129687 + L1PA3 LINE L1 3245 6147 -8 228 111 0 0 chr13 36617784 36617820 -83127078 + (A)n Simple_repeat Simple_repeat 1 36 0 34 0 0 0 chr13 36618453 36618487 -83126411 + AT_rich Low_complexity Low_complexity 1 34 0 27088 49 38 3 chr13 36618668 36622167 -83122731 - L1P LINE L1 -2524 3622 1 4238 136 29 0 chr13 36622169 36622852 -83122046 + L1PA15 LINE L1 5460 6162 -3 4077 188 26 46 chr13 36622858 36624029 -83120869 + L1MB7 LINE L1 5016 6165 -19 540 243 15 120 chr13 36624107 36624295 -83120603 + L1MEc LINE L1 1685 1810 -4586 2032 125 3 14 chr13 36624295 36624592 -83120306 + AluSq SINE Alu 2 295 -18 540 243 15 120 chr13 36624592 36624803 -83120095 + L1MEc LINE L1 1810 2042 -4354 926 151 54 34 chr13 36624842 36625047 -83119851 - L1MA7 LINE L1 -863 5283 5075 * 5426 162 13 17 chr13 36625040 36626056 -83118842 + L1MA7 LINE L1 5278 6289 -2 680 244 41 55 chr13 36626085 36626133 -83118765 + L1MEc LINE L1 2102 2149 -4247 1826 113 47 14 chr13 36626133 36626435 -83118463 + AluSx SINE Alu 1 312 0 680 244 41 55 chr13 36626435 36626730 -83118168 + L1MEc LINE L1 2149 2440 -3956 1931 120 0 37 chr13 36628605 36628905 -83115993 - AluSx SINE Alu -23 289 1 27 0 0 0 chr13 36628907 36628934 -83115964 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chr13 36628956 36628980 -83115918 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2239 113 51 25 chr13 36629779 36630134 -83114764 + THE1B LTR MaLR 1 364 0 11059 105 19 0 chr13 36630134 36631683 -83113215 + THE1B-int LTR MaLR 1 1578 -2 2062 146 48 25 chr13 36631685 36632041 -83112857 + THE1B LTR MaLR 1 364 0 593 252 15 0 chr13 36632110 36632241 -83112657 + MER5A DNA MER1_type 1 133 -56 348 265 103 8 chr13 36632764 36632881 -83112017 - MIR SINE MIR -116 146 19 206 333 89 0 chr13 36632881 36632971 -83111927 + MIR SINE MIR 156 253 -9 436 332 101 14 chr13 36633427 36633644 -83111254 - MIR SINE MIR -12 250 15 257 263 26 0 chr13 36634414 36634490 -83110408 - MER116 DNA Mariner 0 80 3 29 47 0 0 chr13 36634491 36634534 -83110364 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr13 36634934 36634959 -83109939 + AT_rich Low_complexity Low_complexity 1 25 0 1692 227 60 20 chr13 36635262 36635799 -83109099 + L1MD2 LINE L1 5121 5686 -556 232 215 0 129 chr13 36635811 36635854 -83109044 + L1MD2 LINE L1 5914 5940 -419 2082 124 0 3 chr13 36635854 36636153 -83108745 + AluSx SINE Alu 1 298 -14 232 215 0 129 chr13 36636153 36636202 -83108696 + L1MD2 LINE L1 5940 5994 -365 237 132 0 0 chr13 36636212 36636250 -83108648 + (A)n Simple_repeat Simple_repeat 1 38 0 1518 209 59 15 chr13 36636340 36636680 -83108218 - MLT1A1 LTR MaLR -8 357 3 570 288 89 25 chr13 36636930 36637166 -83107732 + MIR SINE MIR 2 252 -10 357 82 0 0 chr13 36637546 36637595 -83107303 + (CA)n Simple_repeat Simple_repeat 2 50 0 3752 279 53 38 chr13 36637599 36638146 -83106752 + L1M3b LINE L1 2 540 -5810 2273 117 0 0 chr13 36638146 36638454 -83106444 - AluSp SINE Alu 0 313 6 3752 279 53 38 chr13 36638454 36639475 -83105423 + L1M3b LINE L1 540 1545 -4805 198 0 0 0 chr13 36639475 36639497 -83105401 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3752 279 53 38 chr13 36639497 36641415 -83103483 + L1M3b LINE L1 1545 3200 -3150 547 164 3 1 chr13 36641411 36641518 -83103380 + L1MA6 LINE L1 6182 6294 -9 * 1042 150 23 134 chr13 36641541 36641876 -83103022 + L1MA7 LINE L1 5813 6120 -171 300 200 0 0 chr13 36641877 36641927 -83102971 + Tigger5 DNA MER2_type 1 50 -2273 474 167 13 0 chr13 36641934 36642012 -83102886 + Tigger5 DNA MER2_type 2245 2323 0 590 184 31 12 chr13 36642012 36642175 -83102723 + L1MA7 LINE L1 6124 6289 -2 419 203 24 11 chr13 36643083 36643204 -83101694 + L1MD2 LINE L1 5746 5876 -320 198 0 0 0 chr13 36643539 36643561 -83101337 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 23 33 0 0 chr13 36644587 36644617 -83100281 + AT_rich Low_complexity Low_complexity 1 30 0 225 194 0 15 chr13 36645347 36645414 -83099484 + L1M4 LINE L1 1283 1348 -5194 17629 173 53 27 chr13 36645436 36648746 -83096152 + L1MA2 LINE L1 14 3238 -4485 630 156 0 0 chr13 36648746 36648836 -83096062 - 5S rRNA rRNA -30 91 2 17629 173 53 27 chr13 36648836 36652949 -83091949 + L1MA2 LINE L1 3238 7723 0 510 300 57 28 chr13 36653123 36653609 -83091289 + L1M4 LINE L1 1612 2153 -4672 26 50 0 0 chr13 36653679 36653719 -83091179 + AT_rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr13 36656396 36656420 -83088478 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 320 250 0 13 chr13 36656613 36656689 -83088209 + L2 LINE L2 3186 3260 -12 189 107 0 0 chr13 36656690 36656718 -83088180 + (TG)n Simple_repeat Simple_repeat 2 29 0 2057 130 32 13 chr13 36656733 36657049 -83087849 + MER7A DNA MER2_type 1 320 -26 260 266 25 0 chr13 36657286 36657365 -83087533 + (TA)n Simple_repeat Simple_repeat 2 82 0 23 68 0 0 chr13 36660052 36660096 -83084802 + AT_rich Low_complexity Low_complexity 1 44 0 248 321 12 0 chr13 36667273 36667357 -83077541 - L1ME LINE L1 -439 5682 5598 646 296 18 93 chr13 36667925 36668140 -83076758 - L2 LINE L2 -3 3310 3135 2329 72 7 3 chr13 36668140 36668444 -83076454 + AluY SINE Alu 1 305 -6 646 296 18 93 chr13 36668444 36668616 -83076282 - L2 LINE L2 -178 3135 2952 * 909 280 96 23 chr13 36668599 36668995 -83075903 - L2 LINE L2 -571 2743 2319 649 272 10 26 chr13 36668996 36669191 -83075707 + MIR SINE MIR 71 262 0 359 238 12 0 chr13 36669577 36669657 -83075241 + MIR SINE MIR 172 252 -10 4497 54 0 0 chr13 36669766 36670324 -83074574 + LTR6B LTR ERV1 1 558 0 657 277 44 39 chr13 36671156 36671362 -83073536 + MIR SINE MIR 2 208 -54 444 346 5 16 chr13 36671886 36672074 -83072824 + MIR SINE MIR 25 210 -52 958 231 42 49 chr13 36672918 36673204 -83071694 + MER65B LTR ERV1 230 513 -18 21 0 0 0 chr13 36673596 36673617 -83071281 + AT_rich Low_complexity Low_complexity 1 21 0 363 0 0 0 chr13 36673617 36673661 -83071237 - L1PA6 LINE L1 -3 6151 6108 21 57 0 0 chr13 36673789 36673824 -83071074 + AT_rich Low_complexity Low_complexity 1 35 0 1544 208 3 10 chr13 36674280 36674592 -83070306 - AluJo SINE Alu 0 312 3 564 222 49 0 chr13 36674743 36674892 -83070006 - MSTD LTR MaLR -1 403 244 757 169 23 0 chr13 36674906 36675036 -83069862 - MSTD LTR MaLR -263 133 1 276 30 0 0 chr13 36677041 36677074 -83067824 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 405 16 8 chr13 36679965 36680086 -83064812 + MIR SINE MIR 28 149 -113 215 281 62 0 chr13 36681760 36681824 -83063074 - MIR SINE MIR -129 133 66 2558 115 3 6 chr13 36681925 36682290 -83062608 + THE1B LTR MaLR 1 364 0 182 311 59 34 chr13 36682557 36682676 -83062222 - MIR SINE MIR -74 188 67 301 292 56 84 chr13 36682752 36682930 -83061968 + MER5B DNA MER1_type 2 174 -4 312 339 89 32 chr13 36685853 36685977 -83058921 + L2 LINE L2 3122 3252 -20 457 281 179 5 chr13 36686111 36686307 -83058591 - MIR SINE MIR 0 262 33 974 196 54 10 chr13 36686495 36686699 -83058199 - AluJb SINE Alu -9 303 91 367 322 0 0 chr13 36686999 36687114 -83057784 + MER103 DNA DNA 1 115 -51 452 299 63 111 chr13 36688123 36688394 -83056504 - MIR SINE MIR 0 262 5 22 0 0 0 chr13 36688553 36688575 -83056323 + AT_rich Low_complexity Low_complexity 1 22 0 2525 183 7 4 chr13 36688887 36689347 -83055551 - MLT1C LTR MaLR -4 463 3 452 336 111 29 chr13 36689469 36689948 -83054950 + L1 LINE L1 3975 4492 -1654 1573 163 69 14 chr13 36690225 36690514 -83054384 + MLT1A1 LTR MaLR 59 363 -2 26 50 0 0 chr13 36690614 36690654 -83054244 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 36690830 36690851 -83054047 + AT_rich Low_complexity Low_complexity 1 21 0 861 154 0 27 chr13 36691592 36691761 -83053137 - AluSg/x SINE Alu 0 300 136 370 266 53 0 chr13 36691920 36692014 -83052884 + MIR SINE MIR 1 99 -163 423 319 38 4 chr13 36692055 36692226 -83052672 + MIR SINE MIR 24 198 -64 1073 186 89 0 chr13 36693116 36693364 -83051534 - Tigger6 DNA MER2_type -2 1595 1326 1589 262 45 21 chr13 36693373 36693839 -83051059 + L1MDa LINE L1 23 499 -6041 * 1856 74 12 0 chr13 36693837 36694095 -83050803 + L1PA6 LINE L1 3853 4113 -2033 10053 61 0 6 chr13 36694476 36696538 -83048360 + L1PA6 LINE L1 4097 6154 0 2007 157 0 3 chr13 36696595 36696908 -83047990 + AluSx SINE Alu 1 312 0 546 215 69 73 chr13 36696909 36697169 -83047729 + L1MDa LINE L1 1411 1669 -4871 2226 95 0 0 chr13 36698058 36698375 -83046523 + AluSp SINE Alu 1 317 0 520 335 140 31 chr13 36699214 36699665 -83045233 - L2 LINE L2 -4 3309 2810 396 0 0 0 chr13 36701581 36701625 -83043273 + (CA)n Simple_repeat Simple_repeat 1 44 0 2342 193 56 6 chr13 36701882 36702363 -83042535 + MLT1D LTR MaLR 1 505 0 21 36 0 0 chr13 36703444 36703472 -83041426 + AT_rich Low_complexity Low_complexity 1 28 0 1541 163 29 97 chr13 36703815 36704196 -83040702 + MLT1A1 LTR MaLR 4 358 -7 260 242 5 172 chr13 36704227 36704413 -83040485 + L2 LINE L2 3109 3263 -50 319 350 91 54 chr13 36704453 36704804 -83040094 - L2 LINE L2 -28 3285 2922 2291 238 95 11 chr13 36705150 36705771 -83039127 + L1MDa LINE L1 64 736 -5804 1098 186 44 22 chr13 36705887 36706161 -83038737 + L1MDa LINE L1 1903 2182 -4358 1097 185 80 15 chr13 36706171 36706289 -83038609 + L1MDa LINE L1 2352 2461 -4228 203 0 37 0 chr13 36706289 36706316 -83038582 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1097 185 80 15 chr13 36706316 36706576 -83038322 + L1MDa LINE L1 2461 2799 -3890 1438 245 34 5 chr13 36706576 36706992 -83037906 - L1M4 LINE L1 -2347 4610 4183 3468 266 65 62 chr13 36706993 36707981 -83036917 - L1M4 LINE L1 -3516 3441 2457 1675 164 48 0 chr13 36707981 36708250 -83036648 - AluSx SINE Alu -25 287 6 3468 266 65 62 chr13 36708250 36708654 -83036244 - L1M4 LINE L1 -4500 2457 2056 3570 136 20 2 chr13 36708654 36709206 -83035692 - MER61E LTR ERV1 -4 565 4 3468 266 65 62 chr13 36709206 36711204 -83033694 - L1M4 LINE L1 -4901 2056 21 370 123 0 0 chr13 36711224 36711289 -83033609 + L1MD1 LINE L1 6177 6241 -1 3597 76 52 2 chr13 36712692 36713176 -83031722 + MER41A LTR ERV1 1 508 -46 277 299 155 6 chr13 36713771 36713945 -83030953 + MLT1I LTR MaLR 1 200 -209 2064 139 38 12 chr13 36714149 36714494 -83030404 - L1PB4 LINE L1 -31 6125 5772 229 302 31 31 chr13 36714506 36714519 -83030379 + MIR SINE MIR 110 122 -140 1966 142 20 0 chr13 36714519 36714821 -83030077 - AluSx SINE Alu -4 308 1 229 302 31 31 chr13 36714821 36714903 -83029995 + MIR SINE MIR 121 205 -57 227 83 28 0 chr13 36714921 36714957 -83029941 - L1MA4A LINE L1 -17 6286 6250 198 0 0 0 chr13 36714957 36714979 -83029919 + (CA)n Simple_repeat Simple_repeat 2 23 0 180 0 0 0 chr13 36714980 36715000 -83029898 + (TA)n Simple_repeat Simple_repeat 1 20 0 192 241 0 37 chr13 36715002 36715056 -83029842 + MIR SINE MIR 209 260 -2 3339 122 26 66 chr13 36715383 36715571 -83029327 - L1MA4A LINE L1 -5 6298 6104 1976 123 10 3 chr13 36715571 36715864 -83029034 - AluSx SINE Alu -17 295 1 3339 122 26 66 chr13 36715864 36716339 -83028559 - L1MA4A LINE L1 -199 6104 5662 596 346 178 5 chr13 36716480 36716908 -83027990 + L2 LINE L2 1448 1949 -1365 509 285 140 42 chr13 36720402 36720595 -83024303 + MIR SINE MIR 4 215 -47 204 40 0 0 chr13 36722313 36722338 -83022560 + (CA)n Simple_repeat Simple_repeat 1 25 0 317 278 122 41 chr13 36722341 36722586 -83022312 - L1ME LINE L1 -319 5802 5538 1268 201 10 7 chr13 36722587 36722886 -83022012 + L1MA4 LINE L1 6000 6299 -1 217 224 12 12 chr13 36722950 36723035 -83021863 + (CATATA)n Simple_repeat Simple_repeat 5 89 0 580 207 155 72 chr13 36724451 36724644 -83020254 + MER20 DNA MER1_type 8 216 -3 231 207 11 23 chr13 36725494 36725581 -83019317 + CT-rich Low_complexity Low_complexity 2 87 0 574 203 30 15 chr13 36725905 36726038 -83018860 - L1PB4 LINE L1 0 6156 6022 428 245 104 33 chr13 36726054 36726266 -83018632 - HAL1 LINE L1 -1190 1317 1091 399 316 23 63 chr13 36727759 36727933 -83016965 + MIR3 SINE MIR 15 181 -27 1484 197 149 101 chr13 36728244 36728928 -83015970 - LTR28 LTR ERV1 0 1020 304 456 284 28 32 chr13 36728947 36729197 -83015701 + L1 LINE L1 2859 3107 -3039 441 265 20 57 chr13 36729562 36729722 -83015176 - LTR1B LTR ERV1 -634 151 1 199 236 36 18 chr13 36731443 36731498 -83013400 - L3 LINE CR1 -704 873 818 1905 157 7 0 chr13 36732062 36732355 -83012543 + AluSx SINE Alu 4 298 -14 183 356 62 14 chr13 36733530 36733676 -83011222 + L2 LINE L2 3161 3313 0 1041 164 29 17 chr13 36734929 36735167 -83009731 + L1MA4 LINE L1 6041 6281 -19 212 0 36 0 chr13 36735595 36735623 -83009275 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 499 164 55 0 chr13 36736558 36736668 -83008230 + L1MA5 LINE L1 6175 6290 -10 250 374 33 0 chr13 36737930 36738021 -83006877 + L2 LINE L2 2980 3073 -240 336 102 0 0 chr13 36738296 36738345 -83006553 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 278 287 180 0 chr13 36738444 36738528 -83006370 - MARNA DNA Mariner -224 362 294 272 70 23 0 chr13 36738528 36738571 -83006327 + (TG)n Simple_repeat Simple_repeat 2 45 0 278 287 180 0 chr13 36738571 36738653 -83006245 - MARNA DNA Mariner -292 294 166 191 341 114 8 chr13 36740655 36740778 -83004120 - MIR3 SINE MIR -60 148 13 684 204 0 40 chr13 36741090 36741271 -83003627 + AluJb SINE Alu 137 311 0 21 0 0 0 chr13 36741728 36741749 -83003149 + AT_rich Low_complexity Low_complexity 1 21 0 2937 31 0 45 chr13 36743010 36743391 -83001507 - L1PA4 LINE L1 -1 6154 5791 621 341 148 6 chr13 36743771 36744123 -83000775 - L2 LINE L2 -399 2915 2514 322 308 0 0 chr13 36744320 36744424 -83000474 + LTR16A LTR ERVL 326 429 -21 185 0 40 0 chr13 36744547 36744572 -83000326 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1889 113 60 0 chr13 36744574 36744839 -83000059 - AluSx SINE Alu -31 281 1 252 170 0 0 chr13 36744935 36744988 -82999910 + A-rich Low_complexity Low_complexity 3 55 0 223 343 128 0 chr13 36746271 36746373 -82998525 - L2 LINE L2 0 3313 3199 9545 111 12 16 chr13 36746999 36748991 -82995907 - L1P4 LINE L1 -361 5807 3835 1882 100 100 6 chr13 36749029 36749316 -82995582 + L1PA10 LINE L1 5826 6134 -38 378 0 0 0 chr13 36749316 36749358 -82995540 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 1882 100 100 6 chr13 36749358 36749401 -82995497 + L1PA10 LINE L1 6134 6172 0 487 308 96 8 chr13 36750303 36750543 -82994355 - MIR SINE MIR 0 262 2 2236 119 3 0 chr13 36750700 36751011 -82993887 + AluSx SINE Alu 1 312 0 313 300 140 33 chr13 36751953 36752103 -82992795 + MIR SINE MIR 91 256 -6 1267 257 36 70 chr13 36752857 36753444 -82991454 + L1ME3A LINE L1 5595 6161 -9 307 330 132 35 chr13 36753778 36754181 -82990717 + L1M4 LINE L1 4590 5031 -1115 3034 288 80 30 chr13 36754296 36755306 -82989592 - L1MEc LINE L1 -4657 1739 612 276 30 0 0 chr13 36755306 36755339 -82989559 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3034 288 80 30 chr13 36755339 36755980 -82988918 - L1MEc LINE L1 -5784 612 5 2380 256 83 39 chr13 36755950 36756925 -82987973 - L1MC4 LINE L1 -404 7707 6690 * 4529 148 27 33 chr13 36757156 36757306 -82987592 - L1MA7 LINE L1 -207 6084 5935 2474 56 7 0 chr13 36757306 36757610 -82987288 + AluY SINE Alu 1 306 -5 4529 148 27 33 chr13 36757610 36758480 -82986418 - L1MA7 LINE L1 -356 5935 5065 838 288 4 18 chr13 36758665 36758891 -82986007 - MER58A DNA MER1_type 0 224 2 394 292 91 76 chr13 36759077 36759460 -82985438 - MLT1J1 LTR MaLR -7 439 51 415 241 200 0 chr13 36760096 36760241 -82984657 - MLT2E LTR ERVL -436 192 19 260 207 17 17 chr13 36760451 36760509 -82984389 + MIR3 SINE MIR 128 185 -23 180 77 0 0 chr13 36761532 36761558 -82983340 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 684 255 99 108 chr13 36761584 36762039 -82982859 + MLT1J LTR MaLR 1 451 -60 26 64 0 0 chr13 36762945 36762992 -82981906 + AT_rich Low_complexity Low_complexity 1 47 0 2998 176 26 11 chr13 36763147 36763716 -82981182 + L1PA16 LINE L1 5580 6157 -9 263 243 27 0 chr13 36763753 36763827 -82981071 + (TA)n Simple_repeat Simple_repeat 2 77 0 312 328 38 57 chr13 36764063 36764325 -82980573 + L1MEc LINE L1 80 336 -6204 777 305 24 71 chr13 36764584 36765122 -82979776 + L1MDa LINE L1 783 1295 -5235 876 186 62 0 chr13 36765167 36765328 -82979570 + FAM SINE Alu 3 173 -2 515 75 124 31 chr13 36765356 36765517 -82979381 + GA-rich Low_complexity Low_complexity 3 178 0 355 250 196 33 chr13 36765716 36765900 -82978998 + L1MDa LINE L1 1564 1777 -4763 250 240 184 9 chr13 36765927 36766144 -82978754 + L1MDa LINE L1 2326 2580 -3960 1927 153 0 0 chr13 36766151 36766454 -82978444 + AluSq SINE Alu 3 305 0 635 311 21 13 chr13 36767707 36767942 -82976956 + MIR SINE MIR 20 256 -6 307 249 99 99 chr13 36768479 36768680 -82976218 + L1MEc LINE L1 362 562 -6159 1619 240 37 21 chr13 36769130 36769513 -82975385 - MSTD LTR MaLR -2 394 6 357 262 65 62 chr13 36769560 36769709 -82975189 + L1MEc LINE L1 1001 1153 -5377 1446 157 125 20 chr13 36769709 36770014 -82974884 + MER44D DNA MER2_type 2 608 -1 357 262 65 62 chr13 36770014 36770139 -82974759 + L1MEc LINE L1 1153 1276 -5254 559 224 43 50 chr13 36770183 36770344 -82974554 - MLT1A1 LTR MaLR 0 365 206 646 236 25 105 chr13 36770378 36770692 -82974206 - L1M4 LINE L1 -2475 3671 3383 549 222 71 10 chr13 36770678 36770876 -82974022 + L1MC3 LINE L1 5265 5474 -768 * 1805 162 139 18 chr13 36770888 36771270 -82973628 - MSTA LTR MaLR 0 428 1 239 247 26 13 chr13 36771270 36771347 -82973551 + L1MC3 LINE L1 5909 5986 -1799 310 222 14 0 chr13 36771543 36771615 -82973283 + L1MD3 LINE L1 7904 7976 -19 611 99 0 9 chr13 36771747 36771858 -82973040 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 481 275 5 9 chr13 36771878 36772063 -82972835 + MLT1E1 LTR MaLR 284 415 -211 476 252 0 84 chr13 36772131 36772274 -82972624 - MLT1A1 LTR MaLR -521 133 3 209 277 0 0 chr13 36772314 36772361 -82972537 - L3 LINE CR1 -687 890 844 3168 149 10 14 chr13 36772878 36773373 -82971525 + MER1A DNA MER1_type 37 529 0 640 303 29 0 chr13 36773482 36773657 -82971241 - LTR16A LTR ERVL -255 195 16 304 293 171 0 chr13 36773790 36773913 -82970985 - L3 LINE CR1 -393 1184 1041 267 320 50 20 chr13 36774226 36774426 -82970472 - L1ME LINE L1 -301 5820 5615 2305 95 0 3 chr13 36774854 36775159 -82969739 - AluY SINE Alu -7 304 1 1920 124 0 46 chr13 36775486 36775793 -82969105 - AluSg SINE Alu -17 293 1 351 44 0 0 chr13 36775840 36775885 -82969013 + (CA)n Simple_repeat Simple_repeat 2 46 0 305 47 23 0 chr13 36775890 36775933 -82968965 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 1841 224 94 22 chr13 36775933 36776432 -82968466 - MLT2B3 LTR ERVL -19 535 1 5765 181 5 8 chr13 36777189 36778857 -82966041 - L1MA6 LINE L1 -2 6298 4635 21 36 0 0 chr13 36779382 36779410 -82965488 + AT_rich Low_complexity Low_complexity 1 28 0 2760 22 0 0 chr13 36782712 36783027 -82961871 - AluYb8 SINE Alu -3 315 1 288 0 0 0 chr13 36783705 36783737 -82961161 + (CA)n Simple_repeat Simple_repeat 2 33 0 324 0 0 0 chr13 36784328 36784364 -82960534 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 213 302 47 23 chr13 36784779 36784865 -82960033 + L3 LINE CR1 1487 1574 -3 1410 224 62 40 chr13 36784971 36785426 -82959472 - MER101 LTR ERV1 0 474 10 7166 139 32 23 chr13 36786480 36787765 -82957133 + HSMAR2 DNA Mariner 2 1298 -4 2449 74 0 0 chr13 36787799 36788110 -82956788 - L1PA7 LINE L1 -23 6131 5821 435 301 129 31 chr13 36788212 36788696 -82956202 - L1ME LINE L1 -302 5868 5327 1611 149 27 0 chr13 36788698 36788994 -82955904 - L1MA4 LINE L1 -5 6295 5992 200 182 0 0 chr13 36790270 36790303 -82954595 + CT-rich Low_complexity Low_complexity 2 34 0 241 362 58 34 chr13 36790617 36790824 -82954074 + L2 LINE L2 2549 2760 -554 2398 48 20 0 chr13 36791268 36791390 -82953508 + AluY SINE Alu 1 119 -192 225 0 0 0 chr13 36791390 36791415 -82953483 + (TA)n Simple_repeat Simple_repeat 2 26 0 2398 48 20 0 chr13 36791415 36791587 -82953311 + AluY SINE Alu 119 301 -10 4041 105 12 25 chr13 36791838 36792476 -82952422 - L1PA10 LINE L1 -5 6163 5534 2525 152 4 6 chr13 36792476 36792949 -82951949 - L1P LINE L1 -2654 3492 3021 878 229 218 49 chr13 36793047 36793657 -82951241 - L1ME3A LINE L1 -2 6168 5456 1213 279 74 53 chr13 36793707 36793886 -82951012 - L1ME3A LINE L1 -758 5388 5214 1700 155 9 31 chr13 36793886 36794203 -82950695 + AluJo SINE Alu 1 310 -2 1213 279 74 53 chr13 36794203 36795202 -82949696 - L1ME3A LINE L1 -932 5214 4269 1891 122 0 21 chr13 36796920 36797199 -82947699 + AluSx SINE Alu 24 296 -16 24 77 0 0 chr13 36797377 36797429 -82947469 + AT_rich Low_complexity Low_complexity 1 52 0 31 0 0 0 chr13 36798004 36798035 -82946863 + AT_rich Low_complexity Low_complexity 1 31 0 220 297 13 26 chr13 36798529 36798684 -82946214 + A-rich Low_complexity Low_complexity 3 155 0 959 224 68 15 chr13 36799390 36799729 -82945169 - L1ME LINE L1 -827 5319 4963 22 0 0 0 chr13 36799758 36799780 -82945118 + AT_rich Low_complexity Low_complexity 1 22 0 442 205 43 43 chr13 36799836 36799997 -82944901 - L1M4 LINE L1 -798 5348 5188 988 188 0 0 chr13 36800018 36800178 -82944720 - AluJb SINE Alu -23 289 130 5834 213 48 45 chr13 36800190 36802813 -82942085 - L1MA8 LINE L1 -4 6287 3656 1351 164 13 0 chr13 36802813 36803045 -82941853 - MER46A DNA MER2_type 0 236 2 5834 213 48 45 chr13 36803045 36803195 -82941703 - L1MA8 LINE L1 -2635 3656 3508 12741 219 37 40 chr13 36803229 36805167 -82939731 - L1MA4A LINE L1 -5 7000 5057 1418 101 0 10 chr13 36805167 36805374 -82939524 - L1PA13 LINE L1 -1 6162 5958 12741 219 37 40 chr13 36805374 36805659 -82939239 - L1MA4A LINE L1 -1948 5057 4773 2415 46 0 3 chr13 36805659 36805986 -82938912 + AluY SINE Alu 3 328 0 12741 219 37 40 chr13 36805986 36808699 -82936199 - L1MA4A LINE L1 -2232 4773 2038 1915 220 5 23 chr13 36808698 36809094 -82935804 - L1MA4A LINE L1 -6459 390 2 * 564 308 111 14 chr13 36809097 36809448 -82935450 - L1M4 LINE L1 -2623 3523 3139 289 268 25 19 chr13 36809459 36809616 -82935282 - L1M4 LINE L1 -3129 3017 2860 2148 130 3 0 chr13 36809653 36809952 -82934946 + AluSx SINE Alu 3 302 -10 28 0 0 0 chr13 36809977 36810005 -82934893 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 36811054 36811078 -82933820 + AT_rich Low_complexity Low_complexity 1 24 0 30 83 0 0 chr13 36811437 36811509 -82933389 + AT_rich Low_complexity Low_complexity 1 72 0 223 188 0 47 chr13 36811515 36811579 -82933319 + A-rich Low_complexity Low_complexity 1 61 0 190 333 89 33 chr13 36811692 36811782 -82933116 - MIR SINE MIR -115 147 53 189 325 55 12 chr13 36811931 36812029 -82932869 - MIR SINE MIR -46 162 57 198 333 0 0 chr13 36812408 36812468 -82932430 - MIR SINE MIR 0 262 203 8713 153 30 11 chr13 36812481 36813736 -82931162 - L1MA2 LINE L1 0 6304 5074 1683 182 17 13 chr13 36813736 36814038 -82930860 - AluJb SINE Alu -9 303 1 8713 153 30 11 chr13 36814038 36815468 -82929430 - L1MA2 LINE L1 -1230 5074 3566 1076 168 173 0 chr13 36815478 36815704 -82929194 - MSTA LTR MaLR -163 265 1 285 339 28 9 chr13 36815808 36815917 -82928981 + L2 LINE L2 3188 3298 -15 500 128 202 0 chr13 36817039 36817133 -82927765 - AluSp/q SINE Alu -9 304 192 202 316 38 68 chr13 36817502 36817635 -82927263 - MER5A DNA MER1_type -26 163 35 184 280 80 0 chr13 36817603 36817653 -82927245 + MER5A DNA MER1_type 131 184 -5 * 1010 90 0 14 chr13 36818193 36818337 -82926561 - L1PA8 LINE L1 -9 6163 6022 5969 172 111 76 chr13 36818337 36818861 -82926037 - L1MC3 LINE L1 -26 7759 7255 266 243 87 29 chr13 36818861 36818964 -82925934 - MLT1F1 LTR MaLR -424 143 35 5969 172 111 76 chr13 36818964 36819437 -82925461 - L1MC3 LINE L1 -530 7255 6800 1718 194 69 75 chr13 36819437 36819624 -82925274 - MLT1D LTR MaLR -3 502 315 651 78 0 0 chr13 36819624 36819714 -82925184 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1718 194 69 75 chr13 36819714 36820031 -82924867 - MLT1D LTR MaLR -190 315 1 5969 172 111 76 chr13 36820031 36820581 -82924317 - L1MC3 LINE L1 -985 6800 6051 21 0 0 0 chr13 36820631 36820652 -82924246 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 36821054 36821075 -82923823 + AT_rich Low_complexity Low_complexity 1 21 0 2671 70 119 5 chr13 36821268 36821670 -82923228 - LTR7 LTR ERV1 -2 448 1 2411 95 48 13 chr13 36821670 36822049 -82922849 - HERVH LTR ERV1 0 7713 7322 1339 130 28 9 chr13 36822047 36822263 -82922635 - HERVH LTR ERV1 -1894 5819 5600 * 4451 136 0 1 chr13 36822264 36822926 -82921972 - HERVH LTR ERV1 -2564 5149 4489 6042 82 15 2 chr13 36822929 36823772 -82921126 - HERVH LTR ERV1 -3720 3993 3140 * 19133 88 18 31 chr13 36823751 36826659 -82918239 - HERVH LTR ERV1 -4718 2995 125 622 130 0 116 chr13 36826670 36826816 -82918082 - LTR7 LTR ERV1 -319 131 3 8626 44 4 0 chr13 36828015 36829085 -82915813 + L1PA4 LINE L1 1449 2522 -3624 8046 30 7 3 chr13 36829065 36830626 -82914272 + L1PA4 LINE L1 4394 5956 -199 * 5856 261 146 37 chr13 36830726 36833317 -82911581 + L1PA15 LINE L1 98 2969 -4612 11728 207 18 12 chr13 36833417 36836247 -82908651 + L1PA15 LINE L1 3812 6648 -955 2127 144 131 11 chr13 36836247 36836629 -82908269 + MSTA LTR MaLR 1 428 0 11728 207 18 12 chr13 36836629 36837583 -82907315 + L1PA15 LINE L1 6648 7595 -8 41 0 0 0 chr13 36837688 36837729 -82907169 + AT_rich Low_complexity Low_complexity 1 41 0 461 181 28 28 chr13 36837729 36837955 -82906943 + (TAA)n Simple_repeat Simple_repeat 1 226 0 601 300 98 18 chr13 36837970 36838480 -82906418 + L1MEc LINE L1 1089 1639 -4757 2555 169 77 8 chr13 36838801 36839333 -82905565 - L1MA5 LINE L1 -2 6298 5730 731 172 8 0 chr13 36839974 36840096 -82904802 + MER20 DNA MER1_type 93 215 -4 2197 123 0 0 chr13 36841679 36841981 -82902917 - AluY SINE Alu -9 302 1 190 226 36 107 chr13 36842546 36842630 -82902268 + MIR SINE MIR 46 123 -139 750 268 56 9 chr13 36843402 36843615 -82901283 + MIR SINE MIR 25 247 -15 508 281 27 36 chr13 36845459 36845680 -82899218 + L1MC4 LINE L1 6474 6692 -1350 2685 232 54 7 chr13 36845683 36846296 -82898602 + MER82 DNA MER2_type 6 647 -6 596 218 115 13 chr13 36846301 36846457 -82898441 + L1MC4 LINE L1 6673 6844 -1198 1616 91 0 5 chr13 36846461 36846669 -82898229 - AluSx SINE Alu -105 207 1 558 317 38 6 chr13 36847808 36847991 -82896907 + MIR SINE MIR 40 228 -34 262 275 58 0 chr13 36848445 36848565 -82896333 - L1MA5 LINE L1 -736 5426 5300 218 204 0 0 chr13 36848734 36848778 -82896120 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 650 308 90 54 chr13 36848789 36849526 -82895372 - L1M4 LINE L1 -892 5254 4454 1489 186 43 14 chr13 36849526 36849806 -82895092 + AluJb SINE Alu 2 289 -23 650 308 90 54 chr13 36849806 36850300 -82894598 - L1M4 LINE L1 -1692 4454 3979 335 293 90 18 chr13 36850418 36850585 -82894313 - L1MEc LINE L1 -4084 2741 2563 43534 42 5 3 chr13 36851036 36857231 -82887667 + L1PA3 LINE L1 1 6204 0 1990 145 3 0 chr13 36857292 36857588 -82887310 + AluSq SINE Alu 1 297 -16 234 326 46 34 chr13 36857677 36857852 -82887046 - L1MEc LINE L1 -4850 1692 1516 2511 220 22 22 chr13 36858119 36858674 -82886224 + MER74A LTR ERVL 4 558 0 21 0 0 0 chr13 36860347 36860368 -82884530 + AT_rich Low_complexity Low_complexity 1 21 0 254 303 110 9 chr13 36860962 36861071 -82883827 - LTR16C LTR ERVL -8 483 364 288 117 43 5 chr13 36861107 36861169 -82883729 + AluY SINE Alu 1 44 -264 1913 105 19 0 chr13 36861294 36861561 -82883337 - AluSp SINE Alu -1 312 41 1934 290 80 23 chr13 36861566 36862300 -82882598 + L1MC/D LINE L1 95 870 -5670 1293 234 33 19 chr13 36862342 36862649 -82882249 + L1MA1 LINE L1 163 473 -7092 * 11088 162 72 61 chr13 36862638 36868480 -82876418 + L1MA1 LINE L1 1707 7618 -103 3967 220 81 21 chr13 36868491 36869631 -82875267 + L1MC/D LINE L1 1084 2323 -4217 351 0 0 0 chr13 36869631 36869670 -82875228 + (CA)n Simple_repeat Simple_repeat 2 40 0 3967 220 81 21 chr13 36869670 36869913 -82874985 + L1MC/D LINE L1 2323 2550 -3990 1062 218 91 40 chr13 36869920 36870549 -82874349 + L1MC/D LINE L1 4841 5437 -1199 2149 70 0 4 chr13 36870549 36870821 -82874077 + AluY SINE Alu 41 311 0 1062 218 91 40 chr13 36870821 36870945 -82873953 + L1MC/D LINE L1 5437 5553 -1083 2103 117 79 18 chr13 36870945 36871288 -82873610 - THE1B LTR MaLR 0 364 1 1062 218 91 40 chr13 36871288 36871360 -82873538 + L1MC/D LINE L1 5553 5970 -666 4529 184 88 159 chr13 36871360 36873249 -82871649 + MER52A LTR ERV1 1 1755 0 614 124 0 0 chr13 36873249 36873346 -82871552 + L1 LINE L1 4735 4831 -1315 30 27 0 0 chr13 36873798 36873835 -82871063 + AT_rich Low_complexity Low_complexity 1 37 0 7517 144 46 25 chr13 36873957 36874842 -82870056 - MER57-int LTR ERV1 -1042 6495 5630 333 0 0 0 chr13 36874842 36874879 -82870019 + (TA)n Simple_repeat Simple_repeat 1 37 0 * 366 23 0 0 chr13 36874878 36874921 -82869977 + (CA)n Simple_repeat Simple_repeat 2 44 0 7517 144 46 25 chr13 36874879 36876119 -82868779 - MER57-int LTR ERV1 -1907 5630 4299 360 43 0 0 chr13 36876432 36876478 -82868420 + (CA)n Simple_repeat Simple_repeat 2 47 0 957 224 0 45 chr13 36876545 36876813 -82868085 - L1MA4 LINE L1 -40 6260 6005 334 325 61 15 chr13 36876834 36877031 -82867867 - MIR SINE MIR -54 208 3 244 100 100 0 chr13 36878146 36878196 -82866702 - MLT2A1 LTR ERVL 0 453 399 2842 86 20 13 chr13 36878251 36878648 -82866250 - MLT2A1 LTR ERVL -44 400 1 1848 148 4 0 chr13 36878991 36879262 -82865636 + AluSg SINE Alu 22 293 -17 180 0 0 0 chr13 36879324 36879344 -82865554 + (T)n Simple_repeat Simple_repeat 1 20 0 4656 175 32 13 chr13 36881352 36882578 -82862320 + L1PA16 LINE L1 4915 6166 0 263 261 0 29 chr13 36883021 36883090 -82861808 - MIR SINE MIR 0 262 196 190 383 94 16 chr13 36883112 36883240 -82861658 - MIR3 SINE MIR -67 141 4 214 313 50 0 chr13 36883471 36883551 -82861347 + L2 LINE L2 3229 3312 -1 22 56 0 0 chr13 36884074 36884110 -82860788 + AT_rich Low_complexity Low_complexity 1 36 0 732 205 19 26 chr13 36884126 36884282 -82860616 - L1ME1 LINE L1 -26 6140 5986 1041 153 24 17 chr13 36884285 36884489 -82860409 + MER52C LTR ERV1 1 185 -1093 869 295 33 31 chr13 36884498 36884802 -82860096 - L1M4 LINE L1 -1113 5033 4726 1804 155 29 0 chr13 36884802 36885079 -82859819 + AluSx SINE Alu 1 285 -27 869 295 33 31 chr13 36885079 36885296 -82859602 - L1M4 LINE L1 -1420 4726 4511 1973 131 56 47 chr13 36885321 36885680 -82859218 + THE1B LTR MaLR 3 364 0 11600 98 3 1 chr13 36885680 36887257 -82857641 + THE1B-int LTR MaLR 1 1580 0 2166 105 43 65 chr13 36887257 36887586 -82857312 + THE1B LTR MaLR 1 323 -41 1943 158 10 0 chr13 36887586 36887896 -82857002 - AluSq SINE Alu 0 313 1 2166 105 43 65 chr13 36887896 36887937 -82856961 + THE1B LTR MaLR 323 363 -1 827 127 0 0 chr13 36888066 36888184 -82856714 - THE1-int LTR MaLR -255 1325 1208 287 316 0 8 chr13 36888183 36888300 -82856598 - L1M4 LINE L1 -1778 4368 4253 * 1756 180 91 14 chr13 36888317 36888733 -82856165 - L1MC2 LINE L1 -1 6343 5896 3329 153 38 10 chr13 36888886 36889246 -82855652 - L1MC2 LINE L1 -492 5852 5463 2069 164 48 3 chr13 36889246 36889619 -82855279 + MLT1B LTR MaLR 1 390 0 3329 153 38 10 chr13 36889619 36889890 -82855008 - L1MC2 LINE L1 -881 5463 5201 651 360 51 30 chr13 36889889 36890414 -82854484 - L1MEc LINE L1 -5779 617 82 * 512 177 0 9 chr13 36890800 36890913 -82853985 + GA-rich Low_complexity Low_complexity 1 112 0 10462 35 0 0 chr13 36893324 36895392 -82849506 + L1PA3 LINE L1 4109 6167 0 26 0 0 0 chr13 36895422 36895448 -82849450 + AT_rich Low_complexity Low_complexity 1 26 0 1075 236 55 63 chr13 36895550 36896007 -82848891 - L1ME2 LINE L1 -278 5886 5434 322 308 77 0 chr13 36896129 36896259 -82848639 + MIR SINE MIR 66 205 -57 285 323 116 0 chr13 36896405 36896560 -82848338 + L3 LINE CR1 604 776 -801 193 324 40 27 chr13 36896753 36896827 -82848071 + L3 LINE CR1 1069 1143 -434 835 415 70 61 chr13 36897195 36897622 -82847276 - Tigger2 DNA MER2_type -2 2716 2 21 36 0 0 chr13 36898770 36898798 -82846100 + AT_rich Low_complexity Low_complexity 1 28 0 5411 202 17 11 chr13 36898868 36900306 -82844592 + L1PA16 LINE L1 4123 5565 -600 12327 47 12 1 chr13 36900326 36902613 -82842285 + L1PA5 LINE L1 3854 6151 -3 3524 131 40 8 chr13 36902618 36903214 -82841684 + L1PA16 LINE L1 5550 6164 -2 2371 73 0 0 chr13 36903259 36903562 -82841336 - AluY SINE Alu -8 303 1 416 237 38 15 chr13 36904032 36904163 -82840735 - MER94 DNA DNA 0 134 1 411 276 199 32 chr13 36904228 36904384 -82840514 + MER5A DNA MER1_type 7 188 -1 23 33 0 0 chr13 36904612 36904642 -82840256 + AT_rich Low_complexity Low_complexity 1 30 0 457 324 97 31 chr13 36904892 36905275 -82839623 - L1ME3A LINE L1 -224 5946 5539 22 0 0 0 chr13 36905331 36905353 -82839545 + AT_rich Low_complexity Low_complexity 1 22 0 264 312 20 15 chr13 36905508 36905710 -82839188 - L1ME3A LINE L1 -940 5206 5004 4410 258 17 21 chr13 36905944 36907265 -82837633 + L1PA15 LINE L1 1294 2609 -3537 1656 185 110 0 chr13 36907300 36907592 -82837306 + MER1B DNA MER1_type 16 339 0 921 241 68 6 chr13 36907592 36907903 -82836995 + L1PA15 LINE L1 2647 2976 -3170 9140 208 38 11 chr13 36908135 36909702 -82835196 + L1PA15 LINE L1 2975 4498 -1667 2602 87 8 19 chr13 36909702 36910070 -82834828 - THE1B LTR MaLR 0 364 1 9140 208 38 11 chr13 36910070 36910082 -82834816 + L1PA15 LINE L1 4498 4508 -1657 2102 67 14 25 chr13 36910082 36910365 -82834533 - AluY SINE Alu -11 300 21 9140 208 38 11 chr13 36910365 36910898 -82834000 + L1PA15 LINE L1 4508 5025 -1140 195 69 0 0 chr13 36910898 36910927 -82833971 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9140 208 38 11 chr13 36910927 36911949 -82832949 + L1PA15 LINE L1 5025 6165 0 309 266 123 34 chr13 36912057 36912350 -82832548 - L1ME3A LINE L1 -2631 3515 3197 1261 205 60 55 chr13 36912427 36912812 -82832086 - MLT1C LTR MaLR 0 467 81 23 33 0 0 chr13 36912973 36913003 -82831895 + AT_rich Low_complexity Low_complexity 1 30 0 392 365 38 0 chr13 36913512 36913723 -82831175 + MLT1J2 LTR MaLR 21 239 -211 1260 299 90 68 chr13 36915141 36915775 -82829123 + HAL1 LINE L1 427 1046 -1461 2674 89 35 15 chr13 36915775 36916170 -82828728 + L1PA10 LINE L1 5765 6167 -1 1260 299 90 68 chr13 36916170 36916182 -82828716 + HAL1 LINE L1 1046 1056 -1451 1471 207 14 7 chr13 36916182 36916472 -82828426 + AluJo SINE Alu 5 296 -16 1260 299 90 68 chr13 36916472 36917451 -82827447 + HAL1 LINE L1 1056 2088 -419 1233 162 20 0 chr13 36917585 36917789 -82827109 - MER2 DNA MER2_type -134 211 4 429 70 0 0 chr13 36917798 36917855 -82827043 + (CA)n Simple_repeat Simple_repeat 2 58 0 230 147 0 0 chr13 36917956 36917990 -82826908 - U2 snRNA snRNA -154 34 1 339 283 93 4 chr13 36917996 36918233 -82826665 + HAL1 LINE L1 2248 2505 -2 253 133 0 22 chr13 36918672 36918717 -82826181 - MER58 DNA MER1_type 0 2420 2377 2346 148 32 25 chr13 36918754 36919185 -82825713 - Tigger2a DNA MER2_type 0 434 1 381 43 0 0 chr13 36919194 36919241 -82825657 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 307 218 79 79 chr13 36919283 36919384 -82825514 - MER58 DNA MER1_type -114 101 1 348 333 22 11 chr13 36920160 36920343 -82824555 + L1MEd LINE L1 12 196 -5923 2164 142 108 5 chr13 36920647 36921035 -82823863 + MSTA LTR MaLR 1 428 0 228 351 39 13 chr13 36921310 36921464 -82823434 + HAL1 LINE L1 1397 1554 -953 236 234 16 16 chr13 36921662 36921790 -82823108 + (TA)n Simple_repeat Simple_repeat 1 128 0 11123 28 3 0 chr13 36921881 36923976 -82820922 - L1PA3 LINE L1 0 6155 4056 529 202 69 32 chr13 36924202 36924441 -82820457 - MER57A-int LTR ERV1 -2710 3621 1548 2167 160 56 134 chr13 36924441 36925105 -82819793 - LTR9 LTR ERV1 0 612 1 309 175 0 0 chr13 36925194 36925280 -82819618 - MER57A-int LTR ERV1 -3202 2889 1865 461 245 0 0 chr13 36925531 36925625 -82819273 - MER57A-int LTR ERV1 -2991 3340 3247 271 204 0 87 chr13 36925714 36925817 -82819081 - MER57A-int LTR ERV1 -3735 1388 1295 * 337 211 61 26 chr13 36925789 36925903 -82818995 - MER57A-int LTR ERV1 -4612 1986 1869 359 260 13 53 chr13 36925903 36926159 -82818739 - MER34C LTR ERV1 -143 442 155 3901 165 20 6 chr13 36926405 36927174 -82817724 - MER57A-int LTR ERV1 -6695 842 1 2289 156 31 0 chr13 36927174 36927565 -82817333 - MER57A LTR ERV1 0 403 1 26 30 0 0 chr13 36927868 36927901 -82816997 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 36928374 36928396 -82816502 + AT_rich Low_complexity Low_complexity 1 22 0 1771 122 79 4 chr13 36929807 36930086 -82814812 - AluSx SINE Alu -10 302 3 1631 152 40 25 chr13 36930423 36930746 -82814152 + MER4A LTR ERV1 1 328 -336 2965 102 12 0 chr13 36930806 36931207 -82813691 + MLT2A2 LTR ERVL 1 406 -47 258 0 118 0 chr13 36931259 36931293 -82813605 + MLT2A2 LTR ERVL 416 453 0 * 549 189 253 26 chr13 36931293 36931523 -82813375 + MER4C LTR ERV1 165 447 -18 494 339 16 32 chr13 36931843 36932032 -82812866 + MIR SINE MIR 47 232 -30 33 73 0 0 chr13 36932040 36932108 -82812790 + AT_rich Low_complexity Low_complexity 1 68 0 2100 207 52 2 chr13 36932366 36932772 -82812126 - MSTB LTR MaLR 0 426 1 235 275 22 138 chr13 36933347 36933485 -82811413 + MIR3 SINE MIR 82 203 -5 372 348 39 11 chr13 36934430 36934608 -82810290 + MIR SINE MIR 49 231 -31 2137 180 55 2 chr13 36934730 36935130 -82809768 - MSTB1 LTR MaLR -8 424 4 334 265 98 0 chr13 36937017 36937149 -82807749 - L1M4 LINE L1 -2950 3196 3052 12940 242 49 16 chr13 36937424 36942049 -82802849 + L1PA15 LINE L1 1 5415 -1401 2651 154 2 16 chr13 36942049 36942483 -82802415 - MSTA LTR MaLR 0 428 1 12940 242 49 16 chr13 36942483 36943931 -82800967 + L1PA15 LINE L1 5415 6814 -2 193 316 214 8 chr13 36945133 36945250 -82799648 - MIR SINE MIR -6 256 116 34 55 0 0 chr13 36945864 36945919 -82798979 + AT_rich Low_complexity Low_complexity 1 55 0 30429 48 34 8 chr13 36945975 36949912 -82794986 + L1P LINE L1 1 4038 -2108 486 0 0 0 chr13 36950603 36950657 -82794241 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 269 301 111 13 chr13 36951862 36952015 -82792883 - L1MC/D LINE L1 -2233 5575 5408 271 407 0 7 chr13 36953615 36953750 -82791148 - L2 LINE L2 -1 3271 3138 254 285 78 24 chr13 36953749 36953876 -82791022 + MIR3 SINE MIR 12 146 -67 * 3936 191 30 37 chr13 36954062 36955346 -82789552 - L1MB4 LINE L1 0 6180 4909 245 292 83 4 chr13 36955413 36955529 -82789369 - L1M4c LINE L1 -5710 936 642 21 36 0 0 chr13 36955981 36956009 -82788889 + AT_rich Low_complexity Low_complexity 1 28 0 267 81 50 40 chr13 36956505 36956604 -82788294 + (TA)n Simple_repeat Simple_repeat 1 100 0 4620 31 0 0 chr13 36957926 36958475 -82786423 - L1PA4 LINE L1 0 6155 5607 267 114 0 0 chr13 36959004 36959048 -82785850 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 390 274 41 123 chr13 36959056 36959421 -82785477 - L2 LINE L2 -20 3293 2959 1799 249 46 69 chr13 36959450 36960085 -82784813 - MLT1E2 LTR MaLR -6 620 1 193 248 314 9 chr13 36960085 36960190 -82784708 - L2 LINE L2 -378 2936 2800 362 328 32 0 chr13 36960190 36960315 -82784583 - L2 LINE L2 -458 2856 2728 23 33 0 0 chr13 36960412 36960442 -82784456 + AT_rich Low_complexity Low_complexity 1 30 0 506 210 19 70 chr13 36960718 36960875 -82784023 - MIR SINE MIR -21 241 93 285 255 0 39 chr13 36960875 36960977 -82783921 + L1MA9 LINE L1 6185 6282 -30 286 359 32 26 chr13 36961071 36961227 -82783671 - MIR SINE MIR -79 183 27 793 170 12 64 chr13 36961304 36961475 -82783423 - MER58A DNA MER1_type -3 221 60 4094 183 7 16 chr13 36961475 36961686 -82783212 - MER44D DNA MER2_type -1882 605 394 3035 195 16 67 chr13 36961686 36962414 -82782484 - LTR8 LTR ERV1 0 691 1 4094 183 7 16 chr13 36962414 36962601 -82782297 - MER44D DNA MER2_type -2093 394 207 2231 191 20 75 chr13 36962601 36963187 -82781711 + MLT2B3 LTR ERVL 1 554 0 4094 183 7 16 chr13 36963187 36963521 -82781377 - MER44D DNA MER2_type -2280 207 7 299 242 0 15 chr13 36963524 36963590 -82781308 - MER58A DNA MER1_type -42 65 1 662 266 51 65 chr13 36963609 36963843 -82781055 + L1ME3A LINE L1 5821 6050 -120 1254 139 0 23 chr13 36963843 36964059 -82780839 + L1PA15 LINE L1 5948 6158 -7 662 266 51 65 chr13 36964059 36964178 -82780720 + L1ME3A LINE L1 6050 6169 -1 435 337 50 0 chr13 36964336 36964538 -82780360 - MIR SINE MIR 0 262 51 3583 145 51 73 chr13 36964701 36965423 -82779475 - MER50 LTR ERV1 -28 706 1 218 306 62 62 chr13 36965958 36966118 -82778780 + L2 LINE L2 3151 3310 -3 831 196 57 10 chr13 36967048 36967243 -82777655 + L1MC4 LINE L1 7599 7713 -95 188 378 78 0 chr13 36968051 36968141 -82776757 - L2 LINE L2 -24 3248 3152 2215 237 86 9 chr13 36968235 36968884 -82776014 + L1MC3 LINE L1 6100 6798 -987 1143 243 39 3 chr13 36969995 36970279 -82774619 - MER67D LTR ERV1 -4 510 217 2462 165 20 41 chr13 36970289 36970829 -82774069 - L1MA9 LINE L1 -2 6310 5782 183 80 0 0 chr13 36970840 36970865 -82774033 + (CA)n Simple_repeat Simple_repeat 2 26 0 303 28 0 0 chr13 36970910 36970946 -82773952 + (TA)n Simple_repeat Simple_repeat 1 36 0 1144 137 71 0 chr13 36970956 36971168 -82773730 - L1MA9 LINE L1 -523 5789 5563 959 151 0 121 chr13 36971177 36971409 -82773489 - MER67D LTR ERV1 -296 218 15 242 369 25 8 chr13 36971620 36971742 -82773156 + MER5A DNA MER1_type 66 189 0 504 320 84 19 chr13 36971947 36972269 -82772629 + L1ME3A LINE L1 5807 6149 -21 2196 64 17 20 chr13 36972297 36972593 -82772305 + AluY SINE Alu 1 295 -16 650 386 6 6 chr13 36972723 36973044 -82771854 + LTR16B LTR ERVL 77 397 -67 235 323 21 11 chr13 36973195 36973288 -82771610 - L2 LINE L2 0 3313 3220 333 149 0 0 chr13 36973288 36973355 -82771543 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 311 266 114 93 chr13 36973355 36973645 -82771253 - L2 LINE L2 -824 2490 2195 579 240 8 8 chr13 36973939 36974068 -82770830 + FLAM_A SINE Alu 1 129 -4 278 294 127 0 chr13 36974564 36974690 -82770208 - MIR SINE MIR 0 262 121 881 249 24 40 chr13 36974962 36975339 -82769559 + L1ME1 LINE L1 3224 3594 -2552 2082 236 92 39 chr13 36975371 36975622 -82769276 + L1ME1 LINE L1 5317 5553 -613 1604 192 14 3 chr13 36975622 36975914 -82768984 + AluJo SINE Alu 6 300 -12 2082 236 92 39 chr13 36975914 36976451 -82768447 + L1ME1 LINE L1 5553 6147 -19 389 224 0 0 chr13 36976969 36977036 -82767862 + MER2 DNA MER2_type 278 344 -1 1078 181 78 47 chr13 36977233 36977648 -82767250 - MLT1D LTR MaLR 0 505 41 1906 156 3 0 chr13 36977648 36977937 -82766961 - AluSx SINE Alu -21 291 2 1078 181 78 47 chr13 36977937 36977980 -82766918 - MLT1D LTR MaLR -464 41 1 189 0 0 0 chr13 36979265 36979286 -82765612 + (T)n Simple_repeat Simple_repeat 1 21 0 543 273 44 54 chr13 36979905 36980110 -82764788 - LTR33 LTR ERVL -309 212 10 1636 300 97 22 chr13 36980112 36980782 -82764116 - HAL1 LINE L1 -68 2439 1820 501 103 13 0 chr13 36980782 36980860 -82764038 + MADE1 DNA Mariner 1 79 -1 1636 300 97 22 chr13 36980860 36980932 -82763966 - HAL1 LINE L1 -687 1820 1755 207 0 0 0 chr13 36980932 36980955 -82763943 + (TG)n Simple_repeat Simple_repeat 2 24 0 1636 300 97 22 chr13 36980955 36981190 -82763708 - HAL1 LINE L1 -752 1755 1388 222 264 0 0 chr13 36982296 36982349 -82762549 + (TG)n Simple_repeat Simple_repeat 1 53 0 22 0 0 0 chr13 36982869 36982891 -82762007 + AT_rich Low_complexity Low_complexity 1 22 0 401 221 11 21 chr13 36983318 36983413 -82761485 + MER81 DNA DNA 6 99 -15 554 350 34 0 chr13 36984877 36985054 -82759844 + MER91A DNA MER1_type 2 184 -12 1676 95 5 5 chr13 36986137 36986359 -82758539 + AluSx SINE Alu 1 222 -90 300 300 66 80 chr13 36989088 36990132 -82754766 + L1MEc LINE L1 786 1815 -4581 499 309 70 52 chr13 36990143 36990340 -82754558 + L1MEc LINE L1 1880 2072 -4324 239 54 27 0 chr13 36990340 36990377 -82754521 + (TG)n Simple_repeat Simple_repeat 2 39 0 499 309 70 52 chr13 36990377 36990638 -82754260 + L1MEc LINE L1 2072 2346 -4050 323 274 8 49 chr13 36990854 36991010 -82753888 - L1ME LINE L1 -5908 162 13 306 169 0 0 chr13 36991892 36991951 -82752947 + L1MA1 LINE L1 6244 6302 0 30 45 0 0 chr13 36991951 36991995 -82752903 + AT_rich Low_complexity Low_complexity 1 44 0 1095 283 106 45 chr13 36993542 36994101 -82750797 - MLT1E LTR MaLR 0 593 1 21 0 0 0 chr13 36994448 36994469 -82750429 + AT_rich Low_complexity Low_complexity 1 21 0 2358 99 0 13 chr13 36995085 36995399 -82749499 + AluY SINE Alu 1 310 -1 2200 97 16 13 chr13 36995424 36995733 -82749165 + AluSg SINE Alu 1 310 0 273 294 185 8 chr13 36995761 36995880 -82749018 - LTR50 LTR ERVL -612 183 44 575 273 118 51 chr13 36995918 36996273 -82748625 + LTR16A LTR ERVL 67 445 -5 1249 284 88 49 chr13 36996642 36997293 -82747605 - ERVL LTR ERVL -290 5474 4799 6059 75 157 38 chr13 36997533 36998580 -82746318 - MER11A LTR ERVK 0 1266 1 297 314 81 16 chr13 36998789 36998913 -82745985 - L2 LINE L2 -515 2799 2668 2076 158 42 34 chr13 36998977 36999524 -82745374 + MLT2A2 LTR ERVL 1 554 0 557 296 26 57 chr13 36999524 36999754 -82745144 - L2 LINE L2 -991 2323 2101 238 340 57 9 chr13 37000369 37000475 -82744423 - MER5B DNA MER1_type -50 128 18 3476 47 2 0 chr13 37000518 37000948 -82743950 + L1PA5 LINE L1 5720 6150 -4 390 322 65 50 chr13 37002164 37002363 -82742535 - MIR SINE MIR -15 247 46 420 291 54 73 chr13 37002507 37002749 -82742149 - L1M4 LINE L1 -4255 2570 2325 1266 209 95 4 chr13 37002749 37003022 -82741876 + AluJo SINE Alu 1 298 -14 420 291 54 73 chr13 37003022 37003301 -82741597 - L1M4 LINE L1 -4500 2325 2059 * 1899 260 67 39 chr13 37003299 37004524 -82740374 - L1MB7 LINE L1 -3 6181 4903 1156 314 17 101 chr13 37004580 37004988 -82739910 - MLT1A2 LTR MaLR 0 374 1 1172 237 65 67 chr13 37004993 37005305 -82739593 - MLT1D LTR MaLR 0 505 193 2129 130 7 3 chr13 37005305 37005612 -82739286 - AluSg SINE Alu -2 308 1 1172 237 65 67 chr13 37005612 37005776 -82739122 - MLT1D LTR MaLR -312 193 30 1141 248 60 86 chr13 37005798 37006821 -82738077 - L1M4 LINE L1 -4782 1864 875 605 231 26 6 chr13 37007242 37007398 -82737500 - MER57A LTR ERV1 -1 402 244 1637 67 0 0 chr13 37007398 37007608 -82737290 - L1PA8 LINE L1 -187 5944 5735 1545 101 0 0 chr13 37007608 37007824 -82737074 + L1PA8 LINE L1 5941 6158 -14 22 0 0 0 chr13 37007824 37007846 -82737052 + AT_rich Low_complexity Low_complexity 1 22 0 635 220 10 131 chr13 37007846 37008076 -82736822 - MER57B LTR ERV1 -160 274 44 773 296 54 25 chr13 37008097 37008414 -82736484 - MER31-int LTR ERV1 -491 7325 7000 1069 259 33 72 chr13 37009946 37010336 -82734562 - MER31-int LTR ERV1 -1338 6199 5825 3116 224 84 67 chr13 37010671 37012642 -82732256 - MER31-int LTR ERV1 -1492 3444 1959 437 206 37 19 chr13 37012831 37012938 -82731960 - MER34 LTR ERV1 -304 238 130 425 236 75 57 chr13 37013108 37013500 -82731398 - MER31-int LTR ERV1 -374 1412 1029 369 242 0 0 chr13 37013883 37013949 -82730949 - MER31-int LTR ERV1 -7238 299 234 1610 171 0 0 chr13 37014175 37014461 -82730437 - L1P LINE L1 -3774 2372 2087 2432 256 77 26 chr13 37014545 37015245 -82729653 + MER21B LTR ERV1 98 833 -30 22 0 0 0 chr13 37015291 37015313 -82729585 + AT_rich Low_complexity Low_complexity 1 22 0 1481 139 4 0 chr13 37015916 37016153 -82728745 + L1PA13 LINE L1 5735 5972 -191 1180 268 100 33 chr13 37016760 37017189 -82727709 + MLT2B1 LTR ERVL 1 458 -62 646 247 60 11 chr13 37017603 37017785 -82727113 - MIR SINE MIR -4 258 68 625 328 37 72 chr13 37018697 37018897 -82726001 - L1MEc LINE L1 -5668 728 522 1957 153 0 0 chr13 37018897 37019185 -82725713 + AluSg SINE Alu 1 288 -22 625 328 37 72 chr13 37019185 37019496 -82725402 - L1MEc LINE L1 -5874 522 235 2532 56 0 3 chr13 37019581 37019886 -82725012 - AluY SINE Alu -7 304 1 628 127 48 8 chr13 37020227 37020353 -82724545 - L1MA2 LINE L1 0 6304 6174 1834 92 4 0 chr13 37020883 37021123 -82723775 - AluSx SINE Alu -15 297 57 266 280 93 0 chr13 37021412 37021519 -82723379 + LTR41 LTR ERVL 89 205 -568 368 198 47 28 chr13 37021720 37021826 -82723072 + LTR41 LTR ERVL 584 691 -82 5522 137 66 14 chr13 37021932 37022874 -82722024 + MSTA-int LTR MaLR 590 1580 0 1570 157 208 14 chr13 37022874 37023225 -82721673 + MSTA LTR MaLR 1 419 -9 373 310 84 25 chr13 37023843 37024046 -82720852 + L1 LINE L1 3128 3342 -2804 4999 236 59 32 chr13 37025108 37027510 -82717388 + L1PA11 LINE L1 1 3582 -4002 16681 160 20 0 chr13 37027511 37031346 -82713552 + L1PA11 LINE L1 3669 7610 -2 246 105 0 0 chr13 37031385 37031423 -82713475 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2296 95 0 3 chr13 37031797 37032091 -82712807 + AluSp SINE Alu 1 293 -20 198 333 54 27 chr13 37032880 37032991 -82711907 - L2 LINE L2 -5 3308 3195 1067 115 25 0 chr13 37033175 37033332 -82711566 + AluSg/x SINE Alu 136 296 -16 246 32 0 0 chr13 37033336 37033367 -82711531 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2333 85 7 0 chr13 37033465 37033772 -82711126 + AluSc SINE Alu 1 309 0 740 348 0 0 chr13 37033859 37034080 -82710818 - MIR SINE MIR -30 232 12 4138 244 39 66 chr13 37034399 37036040 -82708858 + L1MB8 LINE L1 19 1615 -4927 729 201 0 7 chr13 37036041 37036180 -82708718 + FRAM SINE Alu 1 132 -44 765 176 0 0 chr13 37036206 37036331 -82708567 - FLAM_C SINE Alu -18 125 1 1057 223 11 26 chr13 37036331 37036596 -82708302 + L1MB8 LINE L1 4113 4373 -2271 * 1533 257 56 21 chr13 37036593 37037165 -82707733 + L1MB8 LINE L1 4942 5533 -1111 2071 200 50 43 chr13 37037176 37037294 -82707604 + L1MB8 LINE L1 5753 5869 -813 632 184 0 64 chr13 37037294 37037435 -82707463 + FLAM_C SINE Alu 1 132 -1 2071 200 50 43 chr13 37037435 37037921 -82706977 + L1MB8 LINE L1 5869 6361 -321 403 91 0 65 chr13 37037960 37038037 -82706861 + FLAM_C SINE Alu 70 141 -2 1496 172 17 7 chr13 37038038 37038329 -82706569 + L1MB8 LINE L1 6377 6670 -6 4126 173 19 55 chr13 37038402 37039157 -82705741 + L1MB4 LINE L1 5243 5955 -225 2171 88 35 0 chr13 37039157 37039440 -82705458 + AluSg SINE Alu 1 293 -17 4126 173 19 55 chr13 37039440 37039659 -82705239 + L1MB4 LINE L1 5955 6180 0 257 202 76 8 chr13 37041145 37041264 -82703634 - L1ME4a LINE L1 -11 6110 5984 25 31 0 0 chr13 37041376 37041408 -82703490 + AT_rich Low_complexity Low_complexity 1 32 0 2404 176 36 5 chr13 37041409 37041858 -82703040 + LTR24 LTR ERV1 5 467 0 1537 233 11 31 chr13 37041858 37042378 -82702520 + LTR24-int LTR ERV1 1 651 -4472 324 375 109 14 chr13 37042402 37042677 -82702221 + PABL_B-int LTR ERV1 379 679 -6079 422 209 0 33 chr13 37042691 37042782 -82702116 + PABL_B-int LTR ERV1 654 741 -4382 246 193 11 80 chr13 37043102 37043190 -82701708 + CT-rich Low_complexity Low_complexity 3 84 0 871 333 48 30 chr13 37044704 37045205 -82699693 + PABL_B-int LTR ERV1 153 662 -3985 288 222 16 0 chr13 37045306 37045369 -82699529 + PABL_B-int LTR ERV1 4173 4236 -4683 317 331 7 42 chr13 37046405 37046547 -82698351 + PABL_B-int LTR ERV1 5633 5769 -1353 1126 334 56 26 chr13 37046817 37047460 -82697438 + PABL_B-int LTR ERV1 6014 6675 -447 2741 154 57 23 chr13 37047932 37048497 -82696401 + LTR24B LTR ERV1 3 635 0 207 377 29 0 chr13 37048708 37048777 -82696121 - L2 LINE L2 -94 3178 3108 2157 155 137 42 chr13 37049103 37049644 -82695254 + LTR49 LTR ERV1 4 595 0 226 283 98 22 chr13 37050705 37050797 -82694101 + MIR SINE MIR 50 148 -114 857 171 19 6 chr13 37050887 37051045 -82693853 + MLT1A1 LTR MaLR 1 160 -205 921 288 113 15 chr13 37051355 37051755 -82693143 - LTR16A1 LTR ERVL 0 457 19 181 380 36 15 chr13 37052270 37052407 -82692491 - L2 LINE L2 -453 2861 2722 300 170 130 80 chr13 37053640 37053740 -82691158 - MIR SINE MIR -76 186 82 2162 118 0 3 chr13 37053769 37054074 -82690824 + AluSx SINE Alu 5 308 -4 21 0 0 0 chr13 37054153 37054174 -82690724 + AT_rich Low_complexity Low_complexity 1 21 0 1999 207 40 24 chr13 37054216 37054713 -82690185 - MLT1D LTR MaLR 0 505 1 1915 105 3 99 chr13 37054776 37055108 -82689790 + AluSq SINE Alu 1 300 -13 1952 156 3 0 chr13 37056156 37056451 -82688447 + AluSx SINE Alu 1 296 -16 278 233 62 85 chr13 37056953 37057082 -82687816 - L1ME LINE L1 -5900 170 45 4218 130 24 1 chr13 37057192 37057868 -82687030 + L1PA16 LINE L1 5465 6155 -11 32 26 0 0 chr13 37058721 37058760 -82686138 + AT_rich Low_complexity Low_complexity 1 39 0 12703 173 20 96 chr13 37058841 37060296 -82684602 + L1PA7 LINE L1 10 1573 -4888 2245 127 0 0 chr13 37060296 37060604 -82684294 + AluSx SINE Alu 1 308 -4 12703 173 20 96 chr13 37060604 37061756 -82683142 + L1PA7 LINE L1 1573 2203 -4258 6732 88 15 3 chr13 37061756 37063493 -82681405 + L1PA7 LINE L1 4699 6464 -5 12703 173 20 96 chr13 37063493 37065200 -82679698 + L1PA7 LINE L1 2203 4037 -2424 581 77 0 0 chr13 37066026 37066104 -82678794 + Alu SINE Alu 1 78 -232 2205 186 19 12 chr13 37066105 37066519 -82678379 + MER47B DNA MER2_type 2 418 0 915 316 104 38 chr13 37066572 37066640 -82678258 + L1ME LINE L1 817 879 -5517 19564 114 14 2 chr13 37066640 37070528 -82674370 + L1PA8 LINE L1 2243 6172 0 915 316 104 38 chr13 37070528 37071348 -82673550 + L1ME LINE L1 879 1814 -4582 243 107 27 80 chr13 37071477 37071552 -82673346 + A-rich Low_complexity Low_complexity 5 75 0 989 267 33 11 chr13 37071585 37072048 -82672850 + L1ME LINE L1 2176 2610 -3605 2073 121 7 0 chr13 37072048 37072351 -82672547 - AluSp SINE Alu 0 305 1 431 256 81 60 chr13 37072502 37072736 -82672162 + L1ME LINE L1 2683 2921 -3294 2411 138 4 21 chr13 37072737 37073397 -82671501 - L1P4 LINE L1 -615 5548 4896 15755 97 10 0 chr13 37073417 37074146 -82670752 + L1PA7 LINE L1 3058 3778 -2376 2342 89 0 0 chr13 37074146 37074438 -82670460 + AluY SINE Alu 1 292 -19 15755 97 10 0 chr13 37074438 37076798 -82668100 + L1PA7 LINE L1 3778 6150 -4 2693 114 0 0 chr13 37076805 37077200 -82667698 + L1PA13 LINE L1 5769 6163 0 294 259 44 0 chr13 37077214 37077349 -82667549 + L1ME LINE L1 2932 3072 -3143 1056 101 0 13 chr13 37077498 37077657 -82667241 + L1PA11 LINE L1 6018 6174 0 263 146 37 61 chr13 37077677 37077759 -82667139 + L1M LINE L1 5293 5372 -790 190 403 0 0 chr13 37078129 37078206 -82666692 - L2 LINE L2 -561 2753 2677 308 219 49 18 chr13 37078872 37079036 -82665862 + (TA)n Simple_repeat Simple_repeat 1 169 0 300 198 18 135 chr13 37079072 37079183 -82665715 + MER106B DNA MER1_type 5 102 -957 1858 316 82 40 chr13 37079282 37080026 -82664872 - L2 LINE L2 -44 3269 2557 1777 167 13 60 chr13 37080026 37080072 -82664826 + MLT1A1 LTR MaLR 1 48 -317 2271 107 0 3 chr13 37080072 37080372 -82664526 - AluSc SINE Alu -10 299 1 1777 167 13 60 chr13 37080372 37080708 -82664190 + MLT1A1 LTR MaLR 48 365 0 1858 316 82 40 chr13 37080708 37081152 -82663746 - L2 LINE L2 -756 2557 888 4904 205 35 32 chr13 37081153 37082312 -82662586 + L1MCa LINE L1 4 1166 -5260 * 12312 50 2 8 chr13 37082309 37083908 -82660990 - L1PA3 LINE L1 -3647 2499 910 23387 36 5 0 chr13 37083908 37087549 -82657349 + L1PA3 LINE L1 2508 6153 -2 1781 235 64 29 chr13 37087549 37088358 -82656540 + L1MCa LINE L1 1152 2019 -4407 226 103 0 0 chr13 37088358 37088426 -82656472 - Alu SINE Alu 0 323 256 1411 154 20 20 chr13 37088430 37088676 -82656222 + AluJo SINE Alu 57 302 -10 7149 216 56 16 chr13 37088676 37090608 -82654290 + L1MCa LINE L1 2577 4585 -1841 5328 159 33 29 chr13 37090603 37091763 -82653135 + L1MA9 LINE L1 5135 6302 -10 * 4789 232 52 79 chr13 37091783 37094300 -82650598 + L1M4 LINE L1 2163 4610 -1536 209 298 0 0 chr13 37095228 37095285 -82649613 + L2 LINE L2 2583 2639 -675 193 348 76 0 chr13 37096637 37096729 -82648169 + L2 LINE L2 3180 3278 -35 259 263 113 12 chr13 37096755 37096835 -82648063 + MIR SINE MIR 172 259 -3 198 0 0 0 chr13 37097450 37097472 -82647426 + (T)n Simple_repeat Simple_repeat 1 22 0 564 386 96 6 chr13 37097555 37098153 -82646745 + L2 LINE L2 2631 3282 -31 249 57 0 0 chr13 37098156 37098191 -82646707 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 288 313 78 0 chr13 37098948 37099063 -82645835 + MIR SINE MIR 70 193 -69 28 0 0 0 chr13 37099177 37099205 -82645693 + AT_rich Low_complexity Low_complexity 1 28 0 888 333 89 43 chr13 37099396 37099497 -82645401 + L2 LINE L2 1527 1622 -1692 2368 106 0 0 chr13 37099497 37099809 -82645089 - AluSp SINE Alu -1 312 1 888 333 89 43 chr13 37099809 37100316 -82644582 + L2 LINE L2 1622 2189 -1125 2349 166 31 0 chr13 37100316 37100731 -82644167 - MSTA LTR MaLR 0 428 1 888 333 89 43 chr13 37100731 37100981 -82643917 + L2 LINE L2 2189 2426 -888 267 31 0 0 chr13 37101815 37101847 -82643051 + (TTG)n Simple_repeat Simple_repeat 2 33 0 557 250 15 8 chr13 37101881 37102013 -82642885 + ERVL LTR ERVL 1920 2052 -2944 1932 323 105 57 chr13 37102330 37104203 -82640695 + ERVL LTR ERVL 2479 4534 -1230 2453 138 44 10 chr13 37104203 37104615 -82640283 - MSTA LTR MaLR -2 426 1 1932 323 105 57 chr13 37104615 37104769 -82640129 + ERVL LTR ERVL 4534 4679 -1085 912 181 36 10 chr13 37104769 37105042 -82639856 - MLT1A2 LTR MaLR -2 372 4 501 331 23 8 chr13 37105544 37105810 -82639088 + ERVL LTR ERVL 4727 4996 0 2463 62 0 7 chr13 37105864 37106173 -82638725 + AluY SINE Alu 1 307 -4 407 265 7 52 chr13 37106173 37106304 -82638594 + LTR16B LTR ERVL 35 159 -305 659 264 64 21 chr13 37106340 37106575 -82638323 + LTR16B LTR ERVL 220 464 0 1263 296 52 28 chr13 37108017 37108699 -82636199 - L1ME3A LINE L1 -144 6095 5387 1813 160 6 6 chr13 37108766 37109078 -82635820 - AluJb SINE Alu 0 312 1 539 202 191 7 chr13 37109128 37109325 -82635573 + L1MA4 LINE L1 6067 6287 -10 1002 290 82 28 chr13 37109340 37109780 -82635118 - L1ME3A LINE L1 -2929 3286 2795 786 188 35 6 chr13 37109780 37109950 -82634948 - L1MC1 LINE L1 0 6333 6159 1002 290 82 28 chr13 37109950 37110188 -82634710 - L1ME3A LINE L1 -3420 2795 2571 383 294 19 39 chr13 37110256 37110499 -82634399 - L1MEc LINE L1 -3840 2375 2172 268 232 0 14 chr13 37110494 37110563 -82634335 - L1 LINE L1 -2191 3955 3888 * 551 308 91 14 chr13 37110610 37110896 -82634002 - MLT1I LTR MaLR -7 402 95 271 272 0 76 chr13 37111455 37111547 -82633351 - L2 LINE L2 0 3272 3188 4260 115 17 5 chr13 37112441 37113093 -82631805 - L1PA11 LINE L1 -4 6821 6162 3474 150 20 3 chr13 37113179 37113962 -82630936 - L1PA11 LINE L1 -662 6150 5359 1438 119 0 68 chr13 37113962 37114198 -82630700 - AluSc SINE Alu -9 300 81 4613 48 17 2 chr13 37114202 37114780 -82630118 - LTR14C LTR ERVK 0 587 1 982 192 35 0 chr13 37114781 37114984 -82629914 - L1PA11 LINE L1 -1436 5361 5152 * 1914 147 6 0 chr13 37114965 37115354 -82629544 - L1PA11 LINE L1 -4425 2372 1971 609 144 0 0 chr13 37115354 37115472 -82629426 + AluSg/x SINE Alu 190 307 0 657 210 64 56 chr13 37115564 37115797 -82629101 + MER106A DNA MER1_type 1 235 -1 379 313 122 26 chr13 37116083 37116313 -82628585 - MIR SINE MIR -9 253 2 527 114 13 0 chr13 37116768 37116847 -82628051 - MADE1 DNA Mariner 0 80 1 26 64 0 0 chr13 37116873 37116920 -82627978 + AT_rich Low_complexity Low_complexity 1 47 0 30 0 0 0 chr13 37116936 37116966 -82627932 + AT_rich Low_complexity Low_complexity 1 30 0 223 271 0 0 chr13 37117039 37117098 -82627800 + CT-rich Low_complexity Low_complexity 3 61 0 333 319 68 43 chr13 37117109 37117272 -82627626 - MIR SINE MIR -76 186 20 378 287 60 60 chr13 37117898 37118065 -82626833 + MER5A DNA MER1_type 7 173 -16 3156 218 22 87 chr13 37118479 37120370 -82624528 + L1ME2 LINE L1 11 2115 -4826 685 150 0 0 chr13 37120374 37120474 -82624424 + AluJ/FLAM SINE Alu 3 102 -210 216 0 0 0 chr13 37120493 37120517 -82624381 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 245 227 86 57 chr13 37120531 37120687 -82624211 + L1ME2 LINE L1 2225 2421 -4557 253 333 61 56 chr13 37120956 37121187 -82623711 - L2 LINE L2 -850 2464 2233 909 104 0 8 chr13 37121200 37121365 -82623533 - AluSg/x SINE Alu 0 322 159 2068 109 23 3 chr13 37121382 37121686 -82623212 + AluSx SINE Alu 3 312 0 250 406 64 5 chr13 37122062 37122249 -82622649 + MLT1K LTR MaLR 189 386 -202 325 148 25 25 chr13 37122298 37122379 -82622519 + CT-rich Low_complexity Low_complexity 2 82 0 22 94 0 0 chr13 37123153 37123217 -82621681 + AT_rich Low_complexity Low_complexity 1 64 0 210 154 0 0 chr13 37123402 37123441 -82621457 + T-rich Low_complexity Low_complexity 3 41 0 216 281 0 0 chr13 37123448 37123505 -82621393 + L2 LINE L2 3215 3271 -1 537 181 0 0 chr13 37123739 37123916 -82620982 + (TA)n Simple_repeat Simple_repeat 1 177 0 300 183 215 0 chr13 37124388 37124400 -82620498 - L1MA4A LINE L1 0 6303 6292 1435 171 96 42 chr13 37124400 37124756 -82620142 - L1PB4 LINE L1 -5 6151 5777 4296 225 59 57 chr13 37124869 37125825 -82619073 + L1ME2 LINE L1 4415 5368 -1591 1816 181 0 0 chr13 37125825 37126123 -82618775 - AluJo SINE Alu -14 298 1 4296 225 59 57 chr13 37126123 37127216 -82617682 + L1ME2 LINE L1 5368 6469 -490 2098 134 0 0 chr13 37127216 37127515 -82617383 + AluSx SINE Alu 4 302 -10 4296 225 59 57 chr13 37127515 37127898 -82617000 + L1ME2 LINE L1 6469 6850 -109 244 172 35 0 chr13 37127900 37127958 -82616940 + Charlie4 DNA MER1_type 1840 1899 -62 23 0 0 0 chr13 37128891 37128914 -82615984 + AT_rich Low_complexity Low_complexity 1 23 0 206 146 24 0 chr13 37128930 37128944 -82615954 + (TA)n Simple_repeat Simple_repeat 2 14 -29 189 0 0 0 chr13 37128944 37128965 -82615933 + (GA)n Simple_repeat Simple_repeat 2 22 0 206 146 24 0 chr13 37128965 37128991 -82615907 + (TA)n Simple_repeat Simple_repeat 14 43 0 2937 89 1 1 chr13 37129269 37129884 -82615014 + PABL_A LTR ERV1 1 660 0 1748 276 80 25 chr13 37131022 37132023 -82612875 - L1MEc LINE L1 -4098 2727 1510 498 33 0 0 chr13 37132023 37132083 -82612815 + (TG)n Simple_repeat Simple_repeat 1 60 0 1748 276 80 25 chr13 37132083 37132139 -82612759 - L1MEc LINE L1 -5315 1510 1459 1315 267 126 20 chr13 37132160 37132820 -82612078 - L1MEc LINE L1 -5290 1535 806 433 257 103 17 chr13 37132880 37133055 -82611843 - L1MEc LINE L1 -6170 655 466 242 258 15 0 chr13 37134034 37134100 -82610798 + (TA)n Simple_repeat Simple_repeat 2 68 0 320 216 62 72 chr13 37134100 37134197 -82610701 - L1MC4 LINE L1 -1334 6708 6613 29 47 0 0 chr13 37134219 37134262 -82610636 + AT_rich Low_complexity Low_complexity 1 43 0 1928 119 20 20 chr13 37134314 37134607 -82610291 - AluSx SINE Alu -19 293 1 1598 225 54 61 chr13 37135595 37136155 -82608743 - MER74B LTR ERVL -14 608 53 248 292 0 15 chr13 37138054 37138119 -82606779 - L2 LINE L2 0 3313 3250 22 0 0 0 chr13 37138576 37138598 -82606300 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 37138844 37138872 -82606026 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 37139184 37139210 -82605688 + AT_rich Low_complexity Low_complexity 1 26 0 3645 134 45 0 chr13 37139814 37140417 -82604481 + L1MC1 LINE L1 5704 6333 0 289 309 32 16 chr13 37143437 37143560 -82601338 + L2 LINE L2 3148 3272 0 994 318 172 32 chr13 37145298 37146171 -82598727 + L2 LINE L2 685 1679 -1635 193 235 0 0 chr13 37146226 37146277 -82598621 + L2 LINE L2 3263 3313 0 195 218 0 0 chr13 37146300 37146355 -82598543 + (TG)n Simple_repeat Simple_repeat 1 55 0 1992 131 20 0 chr13 37146571 37146876 -82598022 - AluY SINE Alu 0 311 1 26 50 0 0 chr13 37146958 37146998 -82597900 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chr13 37148538 37148561 -82596337 + (TTA)n Simple_repeat Simple_repeat 2 24 0 354 207 11 11 chr13 37148786 37148873 -82596025 + L1ME LINE L1 5548 5634 -487 215 324 0 63 chr13 37149323 37149434 -82595464 + MIR3 SINE MIR 2 105 -103 522 98 76 0 chr13 37150142 37150234 -82594664 - Tigger2 DNA MER2_type -187 2531 2433 275 243 233 0 chr13 37151476 37151579 -82593319 + HsTC2 DNA Tc2 1 127 -1771 357 296 61 8 chr13 37151631 37151763 -82593135 + HsTC2 DNA Tc2 1159 1297 -601 227 272 107 0 chr13 37151768 37151871 -82593027 + HsTC2 DNA Tc2 1638 1751 -147 2057 137 78 6 chr13 37152027 37152386 -82592512 - Tigger2 DNA MER2_type 0 2718 2334 189 0 0 0 chr13 37152517 37152538 -82592360 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 37152538 37152560 -82592338 + AT_rich Low_complexity Low_complexity 1 22 0 425 169 90 0 chr13 37153999 37154088 -82590810 - MLT1L LTR MaLR -12 603 507 208 202 170 43 chr13 37154115 37154209 -82590689 + MIR SINE MIR 157 262 0 24 32 0 0 chr13 37154353 37154384 -82590514 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 37154595 37154618 -82590280 + AT_rich Low_complexity Low_complexity 1 23 0 217 132 0 0 chr13 37156923 37156961 -82587937 + (T)n Simple_repeat Simple_repeat 1 38 0 689 80 0 0 chr13 37156985 37157073 -82587825 - AluSc SINE Alu -116 193 106 1662 178 60 21 chr13 37157610 37157942 -82586956 + MER7A DNA MER2_type 2 344 -2 290 301 97 57 chr13 37158035 37158211 -82586687 - MER5A DNA MER1_type -4 185 3 5176 59 23 13 chr13 37158371 37159062 -82585836 + SVA Other Other 688 1385 -1 21 0 0 0 chr13 37160612 37160633 -82584265 + AT_rich Low_complexity Low_complexity 1 21 0 330 284 113 28 chr13 37161042 37161183 -82583715 - MIR SINE MIR -25 237 85 28 0 0 0 chr13 37162225 37162253 -82582645 + AT_rich Low_complexity Low_complexity 1 28 0 1769 157 193 0 chr13 37162509 37162872 -82582026 - Tigger2a DNA MER2_type -1 433 1 1782 117 79 41 chr13 37163923 37164264 -82580634 - HSMAR2 DNA Mariner -1 1301 948 7206 193 16 14 chr13 37164264 37165852 -82579046 - L1 LINE L1 -1435 4711 3121 6353 136 8 10 chr13 37165853 37167266 -82577632 + L1PB1 LINE L1 4747 6150 -1 6098 141 8 1 chr13 37167276 37168233 -82576665 - HSMAR2 DNA Mariner -337 965 2 1041 205 5 38 chr13 37168262 37168472 -82576426 - AluJo SINE Alu -25 287 85 367 292 52 36 chr13 37168957 37169149 -82575749 - MIR SINE MIR -57 205 11 2239 204 87 59 chr13 37169396 37169722 -82575176 + LTR8A LTR ERV1 34 349 -378 202 28 28 28 chr13 37169722 37169758 -82575140 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2239 204 87 59 chr13 37169758 37170106 -82574792 + LTR8A LTR ERV1 349 727 0 23 0 0 0 chr13 37170290 37170313 -82574585 + AT_rich Low_complexity Low_complexity 1 23 0 652 232 0 0 chr13 37170340 37170478 -82574420 - FLAM_C SINE Alu -3 140 3 2017 224 54 6 chr13 37170838 37171375 -82573523 + L1M4 LINE L1 3629 4191 -1955 1425 186 12 81 chr13 37171943 37172276 -82572622 - MLT1B LTR MaLR -15 375 66 214 295 211 21 chr13 37173478 37173668 -82571230 - MIR SINE MIR -6 256 31 1447 221 28 36 chr13 37173824 37174181 -82570717 - MLT1A1 LTR MaLR -11 354 1 1303 133 0 84 chr13 37174216 37174465 -82570433 - AluJo SINE Alu 0 312 85 873 230 119 13 chr13 37175068 37175294 -82569604 - MIR SINE MIR -1 261 12 857 219 16 65 chr13 37175782 37176028 -82568870 - MLT1A1 LTR MaLR -5 360 127 206 290 187 9 chr13 37176962 37177069 -82567829 + L2 LINE L2 3139 3264 -8 229 238 262 0 chr13 37177362 37177446 -82567452 - LTR24B LTR ERV1 -7 569 464 528 152 20 20 chr13 37177658 37177757 -82567141 - LTR24B LTR ERV1 -474 102 4 192 165 0 35 chr13 37177768 37177853 -82567045 + (CATTT)n Simple_repeat Simple_repeat 2 83 0 260 189 0 28 chr13 37177888 37178031 -82566867 + (CATTT)n Simple_repeat Simple_repeat 2 140 0 252 246 0 29 chr13 37178043 37178181 -82566717 + T-rich Low_complexity Low_complexity 3 136 0 830 269 56 41 chr13 37178230 37178572 -82566326 + L1ME LINE L1 5412 5758 -363 21 0 0 0 chr13 37178668 37178689 -82566209 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 37178719 37178756 -82566142 + AT_rich Low_complexity Low_complexity 1 37 0 2599 314 89 16 chr13 37179342 37180781 -82564117 - L2 LINE L2 0 3313 1767 4445 177 34 26 chr13 37180942 37182149 -82562749 - L1MB2 LINE L1 -2 6885 5672 2246 109 0 3 chr13 37182149 37182461 -82562437 - AluSx SINE Alu -1 311 1 4445 177 34 26 chr13 37182461 37182558 -82562340 - L1MB2 LINE L1 -1215 5672 5577 299 259 47 12 chr13 37183259 37183344 -82561554 - MIR SINE MIR 0 262 175 6475 164 49 20 chr13 37183960 37187524 -82557374 - L1MB2 LINE L1 -3091 3771 1 842 136 28 51 chr13 37187516 37187693 -82557205 - L1P LINE L1 -966 5180 5008 * 333 319 68 43 chr13 37188001 37188164 -82556734 + MIR SINE MIR 20 186 -76 223 271 0 0 chr13 37188175 37188234 -82556664 + GA-rich Low_complexity Low_complexity 3 61 0 30 0 0 0 chr13 37188307 37188337 -82556561 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr13 37188353 37188400 -82556498 + AT_rich Low_complexity Low_complexity 1 47 0 527 114 13 0 chr13 37188426 37188505 -82556393 + MADE1 DNA Mariner 1 80 0 379 313 122 26 chr13 37188960 37189190 -82555708 + MIR SINE MIR 2 253 -9 657 210 64 56 chr13 37189476 37189709 -82555189 - MER106A DNA MER1_type -1 235 1 608 144 0 0 chr13 37189801 37189919 -82554979 - AluSg/x SINE Alu 0 308 191 1914 146 7 0 chr13 37189919 37190289 -82554609 + L1PA11 LINE L1 1971 2353 -4444 6227 98 19 0 chr13 37190289 37191922 -82552976 + L1PA11 LINE L1 5152 6823 -2 246 105 0 0 chr13 37191960 37191998 -82552900 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2261 95 0 3 chr13 37192372 37192666 -82552232 + AluSp SINE Alu 1 293 -20 204 333 54 27 chr13 37193455 37193566 -82551332 - L2 LINE L2 -5 3308 3195 1043 115 25 0 chr13 37193750 37193907 -82550991 + AluSg/x SINE Alu 136 296 -16 246 32 0 0 chr13 37193911 37193942 -82550956 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2297 85 7 0 chr13 37194040 37194347 -82550551 + AluSc SINE Alu 1 309 0 746 348 0 0 chr13 37194434 37194655 -82550243 - MIR SINE MIR -30 232 12 4221 246 38 65 chr13 37194974 37196615 -82548283 + L1M3 LINE L1 19 1615 -4927 613 212 15 7 chr13 37196616 37196753 -82548145 + FRAM SINE Alu 1 132 -44 707 168 8 8 chr13 37196781 37196906 -82547992 - FLAM_C SINE Alu -18 125 1 1016 231 15 26 chr13 37196906 37197170 -82547728 + L1M3 LINE L1 4113 4373 -2271 * 1593 258 56 21 chr13 37197165 37197739 -82547159 + L1M3 LINE L1 4940 5533 -1111 563 147 44 118 chr13 37197750 37197868 -82547030 + L1M3 LINE L1 5753 5851 -827 614 183 0 70 chr13 37197868 37198010 -82546888 + FLAM_C SINE Alu 1 132 -1 563 147 44 118 chr13 37198010 37198095 -82546803 + L1M3 LINE L1 5851 5941 -737 26 30 0 0 chr13 37198742 37198775 -82546123 + AT_rich Low_complexity Low_complexity 1 33 0 2797 0 0 3 chr13 37198827 37199135 -82545763 + AluYa5 SINE Alu 1 307 -4 21 0 0 0 chr13 37199281 37199302 -82545596 + AT_rich Low_complexity Low_complexity 1 21 0 1625 142 16 84 chr13 37200220 37200531 -82544367 + AluSx SINE Alu 1 290 -22 23 68 0 0 chr13 37201262 37201306 -82543592 + AT_rich Low_complexity Low_complexity 1 44 0 811 266 175 47 chr13 37202464 37202915 -82541983 - MLT1J LTR MaLR -2 509 1 795 235 16 11 chr13 37203966 37204153 -82540745 - MER5A DNA MER1_type 0 189 2 2298 84 0 3 chr13 37204730 37205027 -82539871 + AluSg SINE Alu 2 297 -13 199 355 25 25 chr13 37206118 37206239 -82538659 - L2 LINE L2 -339 2933 2813 244 286 76 8 chr13 37206573 37206692 -82538206 - LTR33A LTR ERVL -2 521 395 282 116 0 0 chr13 37206852 37206895 -82538003 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1813 339 75 24 chr13 37207515 37208646 -82536252 - HERVL LTR ERVL -293 5361 4173 600 297 78 14 chr13 37208645 37208864 -82536034 - HERVL LTR ERVL -2553 3211 2979 * 753 310 115 38 chr13 37208966 37209881 -82535017 - HERVL LTR ERVL -2779 2875 1919 295 191 16 0 chr13 37211758 37211821 -82533077 - L1ME LINE L1 -253 5868 5805 337 198 49 25 chr13 37212094 37212175 -82532723 + L2 LINE L2 3227 3309 -4 210 330 45 23 chr13 37212260 37212348 -82532550 - MIR SINE MIR -102 106 17 25 51 0 0 chr13 37212425 37212464 -82532434 + AT_rich Low_complexity Low_complexity 1 39 0 391 257 5 102 chr13 37212729 37212916 -82531982 + L1ME LINE L1 1201 1369 -5578 2394 70 0 0 chr13 37213006 37213307 -82531591 - AluY SINE Alu -10 301 1 544 328 48 34 chr13 37213509 37214317 -82530581 + L1ME LINE L1 1331 2323 -4815 180 0 0 0 chr13 37214729 37214749 -82530149 + (A)n Simple_repeat Simple_repeat 1 20 0 841 294 70 46 chr13 37215132 37215700 -82529198 + L1ME3 LINE L1 393 974 -5096 * 2480 262 75 29 chr13 37215689 37215962 -82528936 + L1ME3 LINE L1 3812 4071 -2009 342 98 0 0 chr13 37215962 37216013 -82528885 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2480 262 75 29 chr13 37216013 37216893 -82528005 + L1ME3 LINE L1 4071 5018 -1062 329 298 13 13 chr13 37217019 37217177 -82527721 + L1ME3 LINE L1 5001 5158 -922 1291 229 108 25 chr13 37217203 37217712 -82527186 + L1ME3 LINE L1 5247 5794 -306 411 233 20 100 chr13 37217832 37217982 -82526916 + L1ME3 LINE L1 5838 5975 -121 33 66 0 0 chr13 37217982 37218043 -82526855 + AT_rich Low_complexity Low_complexity 1 61 0 25 65 0 0 chr13 37218104 37218150 -82526748 + AT_rich Low_complexity Low_complexity 1 46 0 235 175 16 63 chr13 37218309 37218372 -82526526 + MIR SINE MIR 154 213 -49 25 0 0 0 chr13 37219788 37219813 -82525085 + AT_rich Low_complexity Low_complexity 1 25 0 369 280 37 0 chr13 37219813 37219920 -82524978 + MIR SINE MIR 141 251 -11 1500 164 41 11 chr13 37220059 37220328 -82524570 - AluJo SINE Alu -35 277 1 2780 153 40 17 chr13 37220701 37221232 -82523666 + L1MC1 LINE L1 5780 6322 -11 1039 46 8 0 chr13 37221909 37222039 -82522859 - AluY SINE Alu -8 303 173 650 198 95 107 chr13 37222266 37222509 -82522389 + MER57B LTR ERV1 1 269 -163 2493 148 8 0 chr13 37222554 37222947 -82521951 - MER57A LTR ERV1 0 403 8 586 151 49 15 chr13 37222949 37223133 -82521765 - MER57A-int LTR ERV1 0 7537 7277 731 129 26 0 chr13 37223142 37223258 -82521640 - LTR54B LTR ERV1 -377 121 3 1916 151 14 0 chr13 37223272 37223551 -82521347 + AluSx SINE Alu 1 283 -29 7453 167 13 10 chr13 37223551 37224841 -82520057 - MER57A-int LTR ERV1 -419 7118 5825 6335 158 10 28 chr13 37225136 37225546 -82519352 - MER57A-int LTR ERV1 -1688 5849 5433 2366 85 0 0 chr13 37225546 37225841 -82519057 - AluSg SINE Alu -15 295 1 6335 158 10 28 chr13 37225841 37226597 -82518301 - MER57A-int LTR ERV1 -2104 5433 4704 603 62 0 0 chr13 37226597 37226677 -82518221 + Alu SINE Alu 220 299 -13 369 143 0 14 chr13 37226766 37226836 -82518062 + LTR23-int LTR ERV1 951 1019 -4104 2011 171 56 107 chr13 37226842 37227678 -82517220 - MER57A-int LTR ERV1 -2151 4180 1548 373 231 64 39 chr13 37227678 37227881 -82517017 - MER57A-int LTR ERV1 -3023 1913 1706 779 151 19 159 chr13 37227994 37228252 -82516646 - MER57A-int LTR ERV1 -2879 3452 3231 383 242 55 35 chr13 37228395 37228655 -82516243 - MER57A-int LTR ERV1 -3659 1978 1097 331 133 33 0 chr13 37228700 37228760 -82516138 - MER34C LTR ERV1 -369 216 155 2427 71 0 0 chr13 37228885 37229196 -82515702 - AluY SINE Alu 0 311 1 3975 203 13 31 chr13 37229313 37230171 -82514727 - MER57A-int LTR ERV1 -6695 842 1 605 193 0 0 chr13 37230171 37230280 -82514618 - MER57A LTR ERV1 0 403 295 1070 124 16 38 chr13 37230293 37230478 -82514420 - MER61A LTR ERV1 -1 342 162 408 83 0 12 chr13 37230599 37230718 -82514180 - MER61A LTR ERV1 -190 153 3 349 217 0 0 chr13 37230718 37230786 -82514112 + AluJ/FRAM SINE Alu 234 301 -1 959 294 22 45 chr13 37230818 37231488 -82513410 + MER57-int LTR ERV1 2357 6179 -1358 248 265 172 37 chr13 37232331 37232546 -82512352 + HAL1b LINE L1 1049 1292 -56 406 323 16 8 chr13 37234107 37234231 -82510667 + MIR SINE MIR 23 147 -115 6126 69 1 0 chr13 37236002 37236794 -82508104 - L1PA7 LINE L1 -7 6147 5355 * 8567 77 25 35 chr13 37236792 37238087 -82506811 + L1PA7 LINE L1 4073 5354 -792 2279 190 50 0 chr13 37239210 37239710 -82505188 - L1MB3 LINE L1 0 6183 5659 1574 163 0 83 chr13 37239806 37240143 -82504755 + AluJo SINE Alu 1 309 -3 21 36 0 0 chr13 37240163 37240191 -82504707 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 37240210 37240238 -82504660 + AT_rich Low_complexity Low_complexity 1 28 0 299 378 65 29 chr13 37240377 37240652 -82504246 - L2 LINE L2 -181 3091 2807 240 91 5 0 chr13 37242035 37242082 -82502816 - L1M4 LINE L1 -1136 5010 4963 215 149 64 0 chr13 37242364 37242411 -82502487 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr13 37243151 37243173 -82501725 + AT_rich Low_complexity Low_complexity 1 22 0 238 303 138 0 chr13 37243713 37243858 -82501040 + MLT1J2 LTR MaLR 45 209 -241 244 333 26 51 chr13 37244252 37244299 -82500599 + L2 LINE L2 3121 3168 -104 1654 219 22 3 chr13 37244299 37244655 -82500243 - MLT1A1 LTR MaLR 0 365 3 244 333 26 51 chr13 37244655 37244763 -82500135 + L2 LINE L2 3168 3272 0 2264 247 30 35 chr13 37244810 37245413 -82499485 - MER90 LTR ERV1 -14 600 1 200 296 99 25 chr13 37246375 37246456 -82498442 - L2 LINE L2 0 3272 3186 1142 174 13 49 chr13 37246545 37246609 -82498289 - MLT1D LTR MaLR -3 502 437 1854 142 0 0 chr13 37246609 37246883 -82498015 + AluSx SINE Alu 17 290 -22 1142 174 13 49 chr13 37246883 37247042 -82497856 - MLT1D LTR MaLR -68 437 287 5639 190 66 15 chr13 37247090 37249072 -82495826 - L1MC1 LINE L1 0 6333 4243 616 142 14 170 chr13 37249137 37249349 -82495549 - MLT1D LTR MaLR -446 180 2 256 397 17 9 chr13 37249910 37250026 -82494872 + L2 LINE L2 3154 3270 -2 752 284 96 11 chr13 37250671 37250953 -82493945 + L2 LINE L2 2534 2839 -475 667 163 8 0 chr13 37251959 37252082 -82492816 - L1MB8 LINE L1 -2 6176 6053 2268 102 3 0 chr13 37252082 37252387 -82492511 - AluSq SINE Alu -7 306 1 2283 257 85 19 chr13 37252388 37253458 -82491440 - L1ME1 LINE L1 -201 5965 4813 803 115 0 0 chr13 37253458 37253571 -82491327 - AluJb SINE Alu -197 115 3 753 212 45 20 chr13 37253571 37253769 -82491129 - L1ME1 LINE L1 -1327 4819 4617 21 0 0 0 chr13 37254147 37254168 -82490730 + AT_rich Low_complexity Low_complexity 1 21 0 380 294 183 0 chr13 37254797 37254923 -82489975 - MER5A DNA MER1_type 0 189 41 226 329 69 32 chr13 37255329 37255545 -82489353 - L1P LINE L1 -1923 4223 4000 224 151 0 19 chr13 37255549 37255602 -82489296 + CT-rich Low_complexity Low_complexity 1 52 0 192 125 0 0 chr13 37255613 37255645 -82489253 + (TATATG)n Simple_repeat Simple_repeat 1 32 0 2420 257 54 49 chr13 37255878 37257272 -82487626 - L1ME1 LINE L1 -4 6231 4816 347 172 0 0 chr13 37257278 37257336 -82487562 + Tigger1 DNA MER2_type 1 58 -2360 210 216 0 0 chr13 37257339 37257376 -82487522 + polypyrimidine Low_complexity Low_complexity 2 38 0 497 250 0 9 chr13 37257383 37257495 -82487403 + Tigger1 DNA MER2_type 1028 1138 -1280 7603 162 38 8 chr13 37257496 37258826 -82486072 + Tigger1 DNA MER2_type 67 1436 -982 4502 136 33 11 chr13 37258810 37259560 -82485338 + Tigger1 DNA MER2_type 1652 2418 0 * 845 258 46 27 chr13 37259566 37259938 -82484960 - L1ME1 LINE L1 -1410 4805 4427 * 2694 264 93 94 chr13 37259921 37260301 -82484597 - L1ME1 LINE L1 -4260 2136 1757 2325 217 92 19 chr13 37260301 37260942 -82483956 - MER76 LTR ERV 0 688 1 2694 264 93 94 chr13 37260942 37261849 -82483049 - L1ME1 LINE L1 -4639 1757 849 1319 151 75 86 chr13 37261849 37262141 -82482757 - AluSx SINE Alu -23 289 1 2694 264 93 94 chr13 37262141 37262946 -82481952 - L1ME1 LINE L1 -5547 849 45 197 0 0 67 chr13 37263122 37263152 -82481746 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 25 0 0 0 chr13 37263408 37263433 -82481465 + AT_rich Low_complexity Low_complexity 1 25 0 285 29 0 0 chr13 37263525 37263559 -82481339 + (TG)n Simple_repeat Simple_repeat 2 35 0 204 143 95 0 chr13 37263835 37263898 -82481000 + (ATATG)n Simple_repeat Simple_repeat 2 70 0 21 0 0 0 chr13 37263979 37264000 -82480898 + AT_rich Low_complexity Low_complexity 1 21 0 367 332 29 72 chr13 37264204 37264412 -82480486 - L3 LINE CR1 -18 1559 1361 241 318 0 0 chr13 37265400 37265463 -82479435 + MIR SINE MIR 89 151 -57 6003 105 23 2 chr13 37265894 37267016 -82477882 + L1PA13 LINE L1 5017 6153 -10 604 327 0 0 chr13 37267207 37267372 -82477526 - L2 LINE L2 -962 2352 2188 627 320 184 35 chr13 37267530 37268040 -82476858 - L2 LINE L2 -1926 1388 803 1950 146 0 25 chr13 37268060 37268376 -82476522 + AluSq SINE Alu 1 308 -5 341 318 85 23 chr13 37269218 37269394 -82475504 - L1MC5 LINE L1 -48 7913 7727 2518 192 20 2 chr13 37269579 37270085 -82474813 - L1MD1 LINE L1 0 6242 5728 1259 290 12 8 chr13 37270191 37270670 -82474228 - L1MDa LINE L1 -2533 4007 3527 6865 210 109 87 chr13 37270725 37271839 -82473059 - L1MDa LINE L1 -3681 2859 1771 1022 158 25 0 chr13 37271839 37271997 -82472901 - FRAM SINE Alu -15 161 1 6865 210 109 87 chr13 37271997 37273480 -82471418 - L1MDa LINE L1 -4769 1771 26 26 30 0 0 chr13 37274672 37274705 -82470193 + AT_rich Low_complexity Low_complexity 1 33 0 4006 128 15 127 chr13 37276685 37278235 -82466663 - pTR5 LTR ERV1 0 2606 1524 1520 289 52 16 chr13 37278242 37278816 -82466082 - MLT1H1 LTR MaLR 0 555 6 324 257 0 29 chr13 37278842 37278912 -82465986 - MIR SINE MIR -164 98 31 208 163 23 0 chr13 37278944 37278987 -82465911 + GA-rich Low_complexity Low_complexity 1 44 0 232 350 26 8 chr13 37279101 37279218 -82465680 + L2 LINE L2 3194 3312 -1 1887 112 37 20 chr13 37280335 37280630 -82464268 - AluSq SINE Alu -13 300 1 2107 104 0 7 chr13 37281320 37281627 -82463271 + AluSx SINE Alu 1 305 0 24 0 0 0 chr13 37281913 37281937 -82462961 + AT_rich Low_complexity Low_complexity 1 24 0 2101 91 18 0 chr13 37282124 37282423 -82462475 - AluSq SINE Alu 0 307 4 2372 74 3 0 chr13 37282500 37282797 -82462101 - AluSp SINE Alu -15 298 1 184 361 14 0 chr13 37283047 37283119 -82461779 + L2 LINE L2 3185 3257 -15 595 257 209 26 chr13 37283320 37283631 -82461267 + LTR16C LTR ERVL 36 403 -88 21 36 0 0 chr13 37283717 37283745 -82461153 + AT_rich Low_complexity Low_complexity 1 28 0 1238 79 0 0 chr13 37284853 37285017 -82459881 - AluY SINE Alu 0 311 148 32 0 0 0 chr13 37285721 37285753 -82459145 + AT_rich Low_complexity Low_complexity 1 32 0 785 221 0 0 chr13 37285858 37286007 -82458891 - FRAM SINE Alu -23 153 5 329 324 54 0 chr13 37286021 37286169 -82458729 - MIR SINE MIR 0 262 107 335 209 34 95 chr13 37286174 37286380 -82458518 + MLT1E3 LTR MaLR 1 252 -402 822 308 21 27 chr13 37286768 37287099 -82457799 + MLT1E3 LTR MaLR 293 621 -3 249 192 82 27 chr13 37287603 37287676 -82457222 - MLT2D LTR ERVL 0 414 338 2129 116 0 7 chr13 37287677 37287987 -82456911 + AluSc SINE Alu 1 308 -1 1407 175 10 145 chr13 37288009 37288410 -82456488 - MLT2D LTR ERVL -65 349 3 345 343 73 28 chr13 37289596 37289774 -82455124 + MIR SINE MIR 32 217 -45 605 228 29 58 chr13 37289803 37289974 -82454924 + MER63A DNA MER1_type 45 210 0 492 165 11 11 chr13 37290011 37290102 -82454796 - L1MA9 LINE L1 -445 5867 5777 216 182 0 0 chr13 37290103 37290147 -82454751 + (TA)n Simple_repeat Simple_repeat 2 45 0 2038 165 16 3 chr13 37290212 37290582 -82454316 - L1MA9 LINE L1 -519 5793 5419 1382 176 17 26 chr13 37290582 37290883 -82454015 + L1MB1 LINE L1 5868 6166 -2 1678 174 90 16 chr13 37290977 37291344 -82453554 - MSTD LTR MaLR -2 394 1 243 380 0 10 chr13 37292154 37292254 -82452644 + MIR3 SINE MIR 85 183 -25 739 257 45 65 chr13 37292483 37292775 -82452123 - L2 LINE L2 0 3313 3028 2364 231 54 63 chr13 37292923 37293575 -82451323 - MLT1E1 LTR MaLR -9 632 1 791 313 39 0 chr13 37293575 37293831 -82451067 - L2 LINE L2 -521 2793 2528 290 304 29 65 chr13 37294863 37295001 -82449897 + MER5B DNA MER1_type 1 133 -45 1172 274 162 13 chr13 37295075 37295539 -82449359 + MLT1E2 LTR MaLR 83 615 -11 32 43 0 0 chr13 37295540 37295586 -82449312 + AT_rich Low_complexity Low_complexity 1 46 0 * 1228 183 14 4 chr13 37295578 37295824 -82449074 - L1MC2 LINE L1 -6 7777 6278 477 148 213 39 chr13 37295828 37295983 -82448915 - L1MC3 LINE L1 -388 7397 7216 304 295 0 0 chr13 37295992 37296070 -82448828 - MLT1F1 LTR MaLR -453 114 37 3780 221 38 1 chr13 37296071 37296917 -82447981 - L1MC3 LINE L1 -687 7098 6222 4579 241 37 23 chr13 37296918 37298424 -82446474 - L1M4 LINE L1 -1901 4245 2719 1359 240 8 31 chr13 37298455 37298842 -82446056 - L1MCa LINE L1 -5199 1365 988 1117 222 27 24 chr13 37298853 37299150 -82445748 - L1MCa LINE L1 -5166 879 582 1418 268 41 62 chr13 37299314 37299432 -82445466 - L1MCa LINE L1 -5490 555 436 2345 56 0 17 chr13 37299432 37299734 -82445164 - AluY SINE Alu -14 297 1 1418 268 41 62 chr13 37299734 37300182 -82444716 - L1MCa LINE L1 -5609 436 1 273 137 78 0 chr13 37300208 37300259 -82444639 - MER5B DNA MER1_type -123 55 1 278 235 58 13 chr13 37300637 37300747 -82444151 + MER5A DNA MER1_type 26 137 -41 199 170 50 0 chr13 37301467 37301567 -82443331 + (TA)n Simple_repeat Simple_repeat 2 106 0 340 264 240 0 chr13 37302886 37303011 -82441887 + MIR3 SINE MIR 50 204 -4 483 286 54 6 chr13 37303835 37304003 -82440895 - MER113 DNA MER1_type? 0 521 346 812 286 168 10 chr13 37304067 37304465 -82440433 - MLT1G LTR MaLR -120 470 10 1799 163 10 0 chr13 37304945 37305239 -82439659 - AluJo SINE Alu -8 304 8 284 226 280 0 chr13 37305320 37305506 -82439392 + MER113 DNA MER1_type? 89 326 -195 1143 278 178 6 chr13 37305704 37306186 -82438712 + MLT1G LTR MaLR 26 590 0 1057 271 65 35 chr13 37306197 37306966 -82437932 - L1ME3A LINE L1 -219 5951 5129 2015 100 13 17 chr13 37306971 37307266 -82437632 + AluSx SINE Alu 6 300 -8 198 103 0 0 chr13 37307266 37307295 -82437603 + (CAAGA)n Simple_repeat Simple_repeat 2 30 0 728 315 33 21 chr13 37307414 37307833 -82437065 + L1ME LINE L1 3625 4048 -2098 696 286 83 61 chr13 37308217 37308798 -82436100 + L2 LINE L2 2621 3228 -85 308 340 93 24 chr13 37308827 37309074 -82435824 + L1ME LINE L1 4520 4783 -1363 209 83 28 0 chr13 37309226 37309262 -82435636 + (TA)n Simple_repeat Simple_repeat 2 38 0 348 313 38 30 chr13 37309270 37309535 -82435363 + L1ME LINE L1 4967 5233 -913 744 255 30 46 chr13 37309580 37309882 -82435016 + L1ME LINE L1 5309 5605 -2203 23 33 0 0 chr13 37310154 37310184 -82434714 + AT_rich Low_complexity Low_complexity 1 30 0 750 125 0 47 chr13 37310229 37310357 -82434541 + AluSg/x SINE Alu 176 297 -15 241 350 68 0 chr13 37310963 37311080 -82433818 - L2 LINE L2 -3 3269 3145 220 208 21 0 chr13 37311643 37311691 -82433207 + GA-rich Low_complexity Low_complexity 2 50 0 21 0 0 0 chr13 37311764 37311785 -82433113 + AT_rich Low_complexity Low_complexity 1 21 0 2618 119 9 30 chr13 37311796 37312233 -82432665 + MSTA LTR MaLR 1 428 0 4566 234 94 44 chr13 37313533 37317499 -82427399 - L1MCb LINE L1 -2393 4171 1 417 376 76 21 chr13 37318493 37319100 -82425798 - L2 LINE L2 -1157 2157 1518 290 250 118 0 chr13 37319120 37319196 -82425702 + L2 LINE L2 3150 3234 -38 365 283 72 0 chr13 37319356 37319508 -82425390 + L1ME LINE L1 5654 5816 -305 255 204 0 0 chr13 37319529 37319578 -82425320 + L2 LINE L2 3265 3313 0 2936 70 0 3 chr13 37319904 37320289 -82424609 - L1PA13 LINE L1 -3 6160 5777 191 362 76 0 chr13 37321238 37321343 -82423555 + L2 LINE L2 2634 2746 -568 5267 192 59 64 chr13 37322611 37322734 -82422164 - MER45R DNA AcHobo -3 1578 1456 2157 119 0 0 chr13 37322734 37323029 -82421869 + AluSg SINE Alu 1 295 -15 5267 192 59 64 chr13 37323029 37324492 -82420406 - MER45R DNA AcHobo -125 1456 1 2282 181 26 17 chr13 37324561 37324862 -82420036 - MSTB LTR MaLR 0 426 118 1519 243 79 46 chr13 37324862 37325454 -82419444 + LTR9 LTR ERV1 1 612 0 2282 181 26 17 chr13 37325454 37325573 -82419325 - MSTB LTR MaLR -308 118 2 717 285 102 40 chr13 37325968 37326371 -82418527 + MLT1G LTR MaLR 158 585 -5 218 208 42 0 chr13 37326901 37326949 -82417949 + L2 LINE L2 3264 3313 0 256 282 15 122 chr13 37328438 37328569 -82416329 - L2 LINE L2 -7 3306 3190 1236 215 155 50 chr13 37329116 37329613 -82415285 + MLT1H LTR MaLR 1 549 0 22 35 0 0 chr13 37330033 37330062 -82414836 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 37330121 37330149 -82414749 + AT_rich Low_complexity Low_complexity 1 28 0 735 204 111 40 chr13 37330430 37330505 -82414393 - ORSL DNA AcHobo -7 268 200 186 43 0 0 chr13 37330505 37330528 -82414370 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 735 204 111 40 chr13 37330528 37330678 -82414220 - ORSL DNA AcHobo -75 200 27 30 0 0 0 chr13 37331311 37331341 -82413557 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr13 37331733 37331761 -82413137 + AT_rich Low_complexity Low_complexity 1 28 0 257 370 65 0 chr13 37331885 37332069 -82412829 - MER117 DNA MER1_type 0 197 2 276 30 0 0 chr13 37332483 37332516 -82412382 + (TG)n Simple_repeat Simple_repeat 1 33 0 425 138 12 0 chr13 37332516 37332596 -82412302 + GA-rich Low_complexity Low_complexity 2 82 0 249 350 70 7 chr13 37333461 37333604 -82411294 - MIR SINE MIR -100 162 11 * 258 341 149 28 chr13 37333576 37333831 -82411067 + L2 LINE L2 2244 2529 -785 394 134 12 12 chr13 37334384 37334466 -82410432 + CT-rich Low_complexity Low_complexity 3 84 0 23 78 0 0 chr13 37334605 37334656 -82410242 + AT_rich Low_complexity Low_complexity 1 51 0 254 351 108 7 chr13 37335111 37335259 -82409639 - LTR67 LTR ERVL -26 531 369 256 220 0 17 chr13 37335502 37335561 -82409337 - LTR67 LTR ERVL -498 59 2 185 94 31 0 chr13 37335697 37335729 -82409169 + (CA)n Simple_repeat Simple_repeat 2 34 0 210 333 49 0 chr13 37336708 37336789 -82408109 - L2 LINE L2 -2 3311 3227 744 293 13 26 chr13 37337107 37337339 -82407559 - MIR SINE MIR -15 247 19 955 286 112 30 chr13 37339296 37339733 -82405165 - MLT1J LTR MaLR 0 511 39 35 54 0 0 chr13 37339955 37340011 -82404887 + AT_rich Low_complexity Low_complexity 1 56 0 243 281 256 0 chr13 37341207 37341328 -82403570 + MIR SINE MIR 4 155 -107 221 311 57 66 chr13 37341590 37341696 -82403202 - MER5B DNA MER1_type -67 111 7 378 42 0 0 chr13 37341756 37341804 -82403094 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 1595 180 11 4 chr13 37341808 37342086 -82402812 - AluJo SINE Alu -32 280 1 303 344 152 57 chr13 37342093 37342176 -82402722 + L2 LINE L2 2826 2900 -372 252 0 0 0 chr13 37342176 37342204 -82402694 + (TA)n Simple_repeat Simple_repeat 2 29 0 303 344 152 57 chr13 37342204 37342527 -82402371 + L2 LINE L2 2900 3271 -1 216 214 269 62 chr13 37344562 37344707 -82400191 + MIR SINE MIR 88 262 0 903 241 15 71 chr13 37344742 37345008 -82399890 + MIR SINE MIR 7 257 -5 2221 120 0 0 chr13 37345156 37345465 -82399433 + AluSg SINE Alu 1 309 -1 285 309 194 6 chr13 37345497 37345672 -82399226 - MIR SINE MIR -6 256 49 21 57 0 19 chr13 37345690 37345721 -82399177 + AT_rich Low_complexity Low_complexity 1 32 -20 2150 105 0 3 chr13 37345721 37346006 -82398892 - AluSg SINE Alu -26 284 1 21 57 0 19 chr13 37346006 37346027 -82398871 + AT_rich Low_complexity Low_complexity 32 52 0 24 32 0 0 chr13 37346098 37346129 -82398769 + AT_rich Low_complexity Low_complexity 1 31 0 1965 121 0 0 chr13 37346588 37346853 -82398045 + AluSg1 SINE Alu 44 308 -1 2317 69 3 31 chr13 37347532 37347850 -82397048 - AluY SINE Alu -2 309 1 1272 278 72 33 chr13 37348272 37348757 -82396141 + LTR33 LTR ERVL 1 504 -17 242 349 55 14 chr13 37349895 37350041 -82394857 - MIR SINE MIR -102 160 9 203 375 66 29 chr13 37350916 37351052 -82393846 - L2 LINE L2 0 3272 3132 1537 255 45 102 chr13 37351362 37352032 -82392866 + MER45C DNA AcHobo 1 632 -321 298 196 0 18 chr13 37352028 37352084 -82392814 + MER45C DNA AcHobo 899 953 0 * 2420 223 102 42 chr13 37352276 37352471 -82392427 + L1MC4 LINE L1 6458 6640 -1402 423 0 0 0 chr13 37352471 37352518 -82392380 + (TG)n Simple_repeat Simple_repeat 2 48 0 2420 223 102 42 chr13 37352518 37353108 -82391790 + L1MC4 LINE L1 6640 7290 -752 1306 185 72 9 chr13 37353115 37353434 -82391464 - Charlie1 DNA MER1_type -136 2625 2287 11450 143 28 27 chr13 37353438 37356764 -82388134 - L1MA1 LINE L1 0 7721 4406 835 152 0 137 chr13 37356765 37356969 -82387929 + AluSg/x SINE Alu 137 312 0 10070 177 61 63 chr13 37356986 37357244 -82387654 - L1MA1 LINE L1 -3140 4425 4168 978 116 29 0 chr13 37357244 37357382 -82387516 - AluSc SINE Alu -13 296 155 10070 177 61 63 chr13 37357382 37359802 -82385096 - L1MA1 LINE L1 -3397 4168 1606 296 173 109 55 chr13 37359809 37359919 -82384979 - Charlie1 DNA MER1_type -472 2289 2174 4081 203 55 52 chr13 37359923 37360500 -82384398 - L1MC2 LINE L1 -8 6616 6042 2022 131 20 0 chr13 37360500 37360776 -82384122 + AluSq SINE Alu 1 113 -200 453 36 0 0 chr13 37360776 37360831 -82384067 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 2022 131 20 0 chr13 37360831 37361037 -82383861 + AluSq SINE Alu 113 313 0 4081 203 55 52 chr13 37361037 37361726 -82383172 - L1MC2 LINE L1 -582 6042 5347 2595 242 29 62 chr13 37361851 37362844 -82382054 - L1MC2 LINE L1 -1083 5343 4384 463 240 97 7 chr13 37362876 37363030 -82381868 - L1MC2 LINE L1 -6223 203 36 1346 299 36 26 chr13 37363075 37363734 -82381164 + L1MC4 LINE L1 7328 7993 -49 397 301 54 30 chr13 37363734 37363900 -82380998 + MIR SINE MIR 71 240 -22 207 356 40 10 chr13 37366240 37366341 -82378557 - L2 LINE L2 -1551 1763 1660 198 71 0 0 chr13 37366455 37366483 -82378415 + (TG)n Simple_repeat Simple_repeat 1 28 0 325 295 36 29 chr13 37366626 37366765 -82378133 + HERV16 LTR ERVL 1277 1416 -3580 259 253 23 11 chr13 37366962 37367049 -82377849 - HERV16 LTR ERVL -4017 979 892 291 214 84 69 chr13 37367666 37367797 -82377101 - MER20 DNA MER1_type -6 213 81 272 364 79 0 chr13 37367895 37368060 -82376838 - HERV16 LTR ERVL -4816 180 3 390 277 20 0 chr13 37368157 37368258 -82376640 - LTR16A LTR ERVL -114 336 234 236 311 22 11 chr13 37368302 37368392 -82376506 - LTR16A1 LTR ERVL -316 141 51 191 241 259 0 chr13 37368541 37368599 -82376299 - L2 LINE L2 -2 3270 3198 716 190 11 76 chr13 37369165 37369349 -82375549 + MER20 DNA MER1_type 47 218 -1 246 292 15 0 chr13 37371742 37371807 -82373091 + L2 LINE L2 3248 3313 0 1465 189 36 32 chr13 37371915 37372195 -82372703 - AluJb SINE Alu -31 281 1 13067 212 54 18 chr13 37372935 37375139 -82369759 + L1PA16 LINE L1 409 2532 -3691 1878 159 0 17 chr13 37375139 37375441 -82369457 + AluSx SINE Alu 1 297 -15 13067 212 54 18 chr13 37375441 37378762 -82366136 + L1PA16 LINE L1 2532 6220 -3 793 273 34 102 chr13 37379671 37380169 -82364729 - MLT1J LTR MaLR -22 489 26 26 50 0 0 chr13 37380331 37380371 -82364527 + AT_rich Low_complexity Low_complexity 1 40 0 215 229 34 0 chr13 37380497 37380615 -82364283 + (TA)n Simple_repeat Simple_repeat 1 122 0 1600 179 88 0 chr13 37380703 37381022 -82363876 - MER7A DNA MER2_type -1 345 1 357 298 17 7 chr13 37383363 37383503 -82361395 - MLT1A2 LTR MaLR -48 342 186 22 0 0 0 chr13 37383943 37383965 -82360933 + AT_rich Low_complexity Low_complexity 1 22 0 1818 142 0 51 chr13 37384727 37385053 -82359845 - AluSx SINE Alu 0 313 3 1078 155 225 5 chr13 37385157 37385498 -82359400 + MSTB1 LTR MaLR 1 457 0 1045 160 0 0 chr13 37385645 37385814 -82359084 + FRAM SINE Alu 1 168 -8 854 111 8 0 chr13 37385881 37386007 -82358891 + L1PA15 LINE L1 5828 5954 -211 2757 95 21 37 chr13 37386007 37386061 -82358837 - MLT2A1 LTR ERVL 0 444 391 403 33 33 0 chr13 37386061 37386122 -82358776 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2757 95 21 37 chr13 37386122 37386498 -82358400 - MLT2A1 LTR ERVL -53 391 21 1163 174 9 5 chr13 37386502 37386720 -82358178 + L1PA15 LINE L1 5947 6165 0 1219 184 4 4 chr13 37388189 37388423 -82356475 - L1PA16 LINE L1 -5 6161 5928 1184 280 88 34 chr13 37388576 37389085 -82355813 - L2 LINE L2 0 3313 2787 203 340 113 14 chr13 37389187 37389328 -82355570 - L2 LINE L2 0 3313 3159 2049 129 10 0 chr13 37389458 37389752 -82355146 + AluSx SINE Alu 2 298 -14 749 288 52 9 chr13 37389834 37390063 -82354835 - MIR SINE MIR -10 252 14 23 0 0 0 chr13 37391009 37391032 -82353866 + AT_rich Low_complexity Low_complexity 1 23 0 378 0 0 0 chr13 37391047 37391089 -82353809 + (TG)n Simple_repeat Simple_repeat 2 43 0 595 271 34 83 chr13 37391243 37391509 -82353389 + MIR SINE MIR 10 262 0 1710 136 73 17 chr13 37391947 37392248 -82352650 - THE1C LTR MaLR -55 320 3 22 0 0 0 chr13 37392740 37392762 -82352136 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr13 37392866 37392896 -82352002 + (A)n Simple_repeat Simple_repeat 1 30 0 700 196 8 8 chr13 37393131 37393264 -82351634 - FLAM_A SINE Alu 0 133 1 228 310 15 31 chr13 37393584 37393710 -82351188 + MIR SINE MIR 5 131 -77 515 312 13 13 chr13 37393739 37393896 -82351002 + MIR SINE MIR 12 168 -94 6947 134 39 20 chr13 37394985 37395030 -82349868 + Tigger3b DNA MER2_type 1 44 -2984 2055 117 0 0 chr13 37395030 37395343 -82349555 + AluSc SINE Alu 1 313 0 6947 134 39 20 chr13 37395343 37396490 -82348408 + Tigger3b DNA MER2_type 44 1217 -14 505 325 32 30 chr13 37397346 37397566 -82347332 - MIR SINE MIR -16 246 28 6769 65 9 13 chr13 37398802 37399711 -82345187 - L1PA8 LINE L1 0 6172 5268 338 143 18 0 chr13 37399704 37399760 -82345138 + L1PA8 LINE L1 5206 5262 -884 * 307 242 0 15 chr13 37400104 37400170 -82344728 - L2 LINE L2 0 3313 3249 260 326 169 62 chr13 37400960 37401138 -82343760 + L2 LINE L2 3076 3272 0 1519 228 19 16 chr13 37401537 37401914 -82342984 - MLT1D LTR MaLR 0 505 128 288 291 19 0 chr13 37401942 37402045 -82342853 + L1MC4a LINE L1 4887 4991 -1155 1834 147 5 97 chr13 37402258 37402639 -82342259 - MER7A DNA MER2_type -1 345 2 1184 269 117 76 chr13 37402675 37404007 -82340891 + L1MC4a LINE L1 5319 6705 -1103 818 298 55 30 chr13 37404015 37404444 -82340454 - LTR16B LTR ERVL 0 464 1 342 237 26 0 chr13 37404447 37404523 -82340375 + L1MC4 LINE L1 6799 6876 -1166 5025 144 27 2 chr13 37404534 37405724 -82339174 + L1PA16 LINE L1 4954 6165 -1 21 57 0 0 chr13 37405761 37405796 -82339102 + AT_rich Low_complexity Low_complexity 1 35 0 2002 130 3 0 chr13 37405798 37406091 -82338807 + AluSp SINE Alu 1 294 -19 27 0 0 0 chr13 37406096 37406123 -82338775 + AT_rich Low_complexity Low_complexity 1 27 0 209 242 70 96 chr13 37406179 37406336 -82338562 + MIR3 SINE MIR 44 196 -12 303 241 69 11 chr13 37407478 37407565 -82337333 - L2 LINE L2 -32 3281 3190 220 262 14 83 chr13 37407565 37407710 -82337188 + L2 LINE L2 2372 2506 -808 2061 87 4 11 chr13 37407728 37408029 -82336869 - AluSx SINE Alu 0 305 7 214 270 32 0 chr13 37408824 37408887 -82336011 + L2 LINE L2 3207 3271 -1 660 332 59 59 chr13 37410078 37410572 -82334326 + L3 LINE CR1 1063 1556 -21 200 263 0 0 chr13 37412170 37412208 -82332690 + polypurine Low_complexity Low_complexity 6 43 0 271 238 75 116 chr13 37412357 37412504 -82332394 - MIR SINE MIR -22 240 100 22 80 0 0 chr13 37413448 37413498 -82331400 + AT_rich Low_complexity Low_complexity 1 50 0 399 273 136 26 chr13 37413966 37414120 -82330778 - L2 LINE L2 -5 3308 3138 277 358 22 15 chr13 37414139 37414273 -82330625 + MER115 DNA AcHobo 13 147 -546 2110 138 3 0 chr13 37414458 37414754 -82330144 - AluSq SINE Alu -16 297 1 339 219 64 11 chr13 37414763 37414925 -82329973 + LTR37A LTR ERV1 111 280 -188 201 226 0 0 chr13 37414948 37415001 -82329897 + (TA)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr13 37415154 37415184 -82329714 + AT_rich Low_complexity Low_complexity 1 30 0 209 368 96 0 chr13 37415184 37415320 -82329578 - L2 LINE L2 -230 3083 2935 22 0 0 0 chr13 37415655 37415677 -82329221 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 37415806 37415828 -82329070 + AT_rich Low_complexity Low_complexity 1 22 0 609 215 23 8 chr13 37415909 37416039 -82328859 - MSTD LTR MaLR -1 395 264 503 219 29 0 chr13 37416097 37416199 -82328699 - MSTD LTR MaLR -244 152 48 1851 184 72 3 chr13 37416199 37416558 -82328340 + MSTA LTR MaLR 1 384 -44 567 179 0 0 chr13 37416558 37416642 -82328256 - AluS SINE Alu -227 85 2 1479 131 0 0 chr13 37416642 37416848 -82328050 + AluSg/x SINE Alu 83 288 -22 265 174 0 0 chr13 37416870 37416916 -82327982 + MSTA LTR MaLR 383 428 0 405 77 0 0 chr13 37416916 37416968 -82327930 - MSTD LTR MaLR -344 52 1 486 0 0 0 chr13 37418389 37418443 -82326455 + (TG)n Simple_repeat Simple_repeat 2 55 0 688 293 101 77 chr13 37418604 37418949 -82325949 - L2 LINE L2 -5 3308 2948 825 206 61 88 chr13 37418949 37419357 -82325541 + MLT2C1 LTR ERVL 1 397 0 688 293 101 77 chr13 37419357 37419468 -82325430 - L2 LINE L2 -365 2948 2841 393 239 11 0 chr13 37419493 37419581 -82325317 - L2 LINE L2 -990 2324 2236 1666 218 43 5 chr13 37421392 37421763 -82323135 - MLT1B LTR MaLR 0 390 6 877 152 18 0 chr13 37422481 37422646 -82322252 - L1MA6 LINE L1 0 6300 6133 900 179 28 9 chr13 37422800 37423012 -82321886 - L1MA7 LINE L1 -9 6282 6067 21 0 0 0 chr13 37424115 37424136 -82320762 + AT_rich Low_complexity Low_complexity 1 21 0 208 380 40 20 chr13 37424382 37424482 -82320416 - MIR3 SINE MIR -97 111 10 4175 161 150 79 chr13 37425237 37425800 -82319098 + L1MC3 LINE L1 6495 7016 -769 292 291 0 0 chr13 37425800 37425879 -82319019 + MLT1F1 LTR MaLR 46 124 -443 4175 161 150 79 chr13 37425879 37426427 -82318471 + L1MC3 LINE L1 7016 7769 -16 318 212 51 68 chr13 37426455 37426573 -82318325 - L1MC4 LINE L1 -1338 6704 6589 223 317 33 0 chr13 37426619 37426679 -82318219 + L2 LINE L2 3173 3234 -38 1805 163 3 29 chr13 37426681 37426987 -82317911 - AluJo SINE Alu -13 299 2 198 128 0 0 chr13 37427787 37427826 -82317072 + (TC)n Simple_repeat Simple_repeat 2 40 0 270 233 14 0 chr13 37428494 37428567 -82316331 + L1ME2 LINE L1 5821 5894 -280 474 261 0 65 chr13 37428656 37428794 -82316104 + L1ME2 LINE L1 5920 6048 -116 1008 172 20 0 chr13 37428807 37429010 -82315888 - L1MA8 LINE L1 -4 6287 6081 3095 170 37 35 chr13 37430122 37430401 -82314497 + L1MA8 LINE L1 5621 5898 -393 1879 186 37 127 chr13 37430401 37431073 -82313825 + LTR9 LTR ERV1 1 612 0 3095 170 37 35 chr13 37431073 37431441 -82313457 + L1MA8 LINE L1 5898 6269 -22 212 279 66 0 chr13 37431771 37431832 -82313066 - L2 LINE L2 0 3313 3249 256 111 95 48 chr13 37432580 37432643 -82312255 - MLT1J LTR MaLR -33 478 413 225 228 277 0 chr13 37432673 37432774 -82312124 - MLT1J LTR MaLR -380 131 3 1036 187 34 1 chr13 37433359 37433576 -82311322 + L1M3 LINE L1 5564 5791 -392 765 149 0 0 chr13 37433804 37433918 -82310980 + AluJo/FLAM SINE Alu 1 114 -198 710 200 40 0 chr13 37433912 37434062 -82310836 + AluSg/x SINE Alu 155 310 0 * 285 301 148 53 chr13 37435669 37435878 -82309020 + MIR SINE MIR 33 261 -1 23 0 0 0 chr13 37435882 37435905 -82308993 + AT_rich Low_complexity Low_complexity 1 23 0 467 342 54 19 chr13 37436334 37436594 -82308304 + L2 LINE L2 1733 2001 -1313 698 217 92 0 chr13 37436638 37436790 -82308108 + MER63A DNA MER1_type 1 166 -44 376 233 89 11 chr13 37436805 37436985 -82307913 + Zaphod DNA AcHobo 648 841 -3190 423 0 0 0 chr13 37437013 37437060 -82307838 + (TA)n Simple_repeat Simple_repeat 2 48 0 1860 159 0 23 chr13 37437060 37437361 -82307537 - AluSx SINE Alu -18 294 1 1571 197 60 26 chr13 37437488 37437579 -82307319 + Zaphod DNA AcHobo 3595 3681 -350 2397 72 0 0 chr13 37437579 37437870 -82307028 + AluSg SINE Alu 1 291 -19 1571 197 60 26 chr13 37437870 37438195 -82306703 + Zaphod DNA AcHobo 3681 4025 -6 408 351 81 11 chr13 37439470 37439755 -82305143 + L2 LINE L2 3005 3309 -4 327 238 12 12 chr13 37440440 37440520 -82304378 + L2 LINE L2 3186 3265 -7 2903 118 7 2 chr13 37441719 37442151 -82302747 + MER57B LTR ERV1 1 434 0 34 42 0 0 chr13 37443174 37443222 -82301676 + AT_rich Low_complexity Low_complexity 1 48 0 2226 276 151 28 chr13 37443856 37444581 -82300317 + HAL1 LINE L1 43 677 -1830 198 0 0 0 chr13 37444581 37444603 -82300295 + (CA)n Simple_repeat Simple_repeat 1 22 0 2226 276 151 28 chr13 37444603 37445324 -82299574 + HAL1 LINE L1 677 1668 -839 358 261 121 20 chr13 37445332 37445531 -82299367 + HAL1 LINE L1 2289 2507 0 475 252 8 8 chr13 37446301 37446420 -82298478 - MIR SINE MIR -24 238 120 2347 92 0 13 chr13 37446432 37446748 -82298150 - AluSx SINE Alu 0 312 1 841 201 98 0 chr13 37447559 37447743 -82297155 - MER3 DNA MER1_type 0 209 8 1805 152 51 0 chr13 37448011 37448287 -82296611 + AluSx SINE Alu 2 291 -21 1480 126 78 51 chr13 37448411 37448431 -82296467 - AluSq SINE Alu -12 301 283 262 43 64 0 chr13 37448431 37448478 -82296420 + T-rich Low_complexity Low_complexity 2 180 0 1480 126 78 51 chr13 37448478 37448750 -82296148 - AluSq SINE Alu -30 283 1 2442 58 0 3 chr13 37448796 37449091 -82295807 + AluY SINE Alu 1 294 -17 185 375 18 0 chr13 37449730 37449786 -82295112 - L2 LINE L2 -90 3182 3126 295 253 115 11 chr13 37449885 37449972 -82294926 - L2 LINE L2 0 3313 3218 2339 96 7 0 chr13 37450251 37450554 -82294344 + AluY SINE Alu 6 310 -1 227 362 70 76 chr13 37451011 37451340 -82293558 - L2 LINE L2 0 3272 2946 23 33 0 0 chr13 37451401 37451431 -82293467 + AT_rich Low_complexity Low_complexity 1 30 0 341 309 33 0 chr13 37451866 37452018 -82292880 - L1ME1 LINE L1 -3 6163 6007 1502 210 10 10 chr13 37452356 37452661 -82292237 + AluJb SINE Alu 1 305 -7 345 24 0 0 chr13 37452795 37452837 -82292061 + (TG)n Simple_repeat Simple_repeat 2 43 0 1259 209 25 76 chr13 37453922 37454339 -82290559 + MLT2C1 LTR ERVL 1 662 -1 23 54 0 0 chr13 37454524 37454561 -82290337 + AT_rich Low_complexity Low_complexity 1 37 0 219 224 0 59 chr13 37455334 37455419 -82289479 + A-rich Low_complexity Low_complexity 4 83 0 29 47 0 0 chr13 37456781 37456824 -82288074 + AT_rich Low_complexity Low_complexity 1 43 0 466 337 10 45 chr13 37456853 37457055 -82287843 - MIR SINE MIR -66 196 2 3500 202 126 5 chr13 37457320 37458299 -82286599 - Charlie1a DNA MER1_type 0 1455 359 1150 234 70 32 chr13 37458318 37458634 -82286264 - Charlie1a DNA MER1_type -1126 329 2 537 125 0 11 chr13 37459928 37460038 -82284860 + AluY SINE Alu 213 311 0 1997 84 23 0 chr13 37460653 37460916 -82283982 + AluSc SINE Alu 26 294 -15 4132 207 34 13 chr13 37461594 37462498 -82282400 + MER49 LTR ERV1 1 923 0 267 366 94 14 chr13 37463229 37463442 -82281456 + L2 LINE L2 2139 2368 -946 201 74 0 0 chr13 37463477 37463504 -82281394 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1556 179 3 34 chr13 37463522 37463813 -82281085 - AluJb SINE Alu -30 282 1 342 194 0 0 chr13 37463908 37463980 -82280918 - MER116 DNA Mariner 0 80 9 29 28 0 0 chr13 37466172 37466208 -82278690 + AT_rich Low_complexity Low_complexity 1 36 0 246 105 0 0 chr13 37466874 37466912 -82277986 + (CA)n Simple_repeat Simple_repeat 1 38 0 441 110 0 0 chr13 37467564 37467637 -82277261 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 0 0 0 chr13 37468024 37468046 -82276852 + AT_rich Low_complexity Low_complexity 1 22 0 265 263 62 0 chr13 37468686 37468766 -82276132 - L2 LINE L2 0 3272 3188 284 309 27 34 chr13 37469545 37469694 -82275204 - L2 LINE L2 -1 3312 3165 315 0 0 0 chr13 37470584 37470619 -82274279 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 198 250 103 15 chr13 37471038 37471106 -82273792 - MIR SINE MIR -63 145 72 216 0 0 0 chr13 37471133 37471157 -82273741 + (A)n Simple_repeat Simple_repeat 1 24 0 2304 96 0 0 chr13 37471896 37472189 -82272709 - AluSc SINE Alu -16 293 1 1785 145 151 3 chr13 37472463 37472780 -82272118 + THE1B LTR MaLR 1 364 0 4762 116 59 0 chr13 37472780 37473538 -82271360 + THE1B-int LTR MaLR 1 803 -777 2664 183 2 48 chr13 37473530 37473790 -82271108 + L1MA7 LINE L1 5523 5794 -497 * 231 36 0 0 chr13 37473790 37473818 -82271080 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2664 183 2 48 chr13 37473818 37473834 -82271064 + L1MA7 LINE L1 5794 5809 -482 378 0 0 0 chr13 37473834 37473876 -82271022 + (GA)n Simple_repeat Simple_repeat 1 42 0 2664 183 2 48 chr13 37473876 37474200 -82270698 + L1MA7 LINE L1 5809 6096 -195 1101 120 0 0 chr13 37474227 37474404 -82270494 - AluSg/x SINE Alu 0 308 132 701 133 107 0 chr13 37474471 37474621 -82270277 + L1MA9 LINE L1 6141 6306 -6 304 340 109 32 chr13 37475341 37475497 -82269401 + L2 LINE L2 3101 3268 -4 266 315 11 0 chr13 37475500 37475589 -82269309 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 846 225 29 10 chr13 37475993 37476202 -82268696 - LTR16A1 LTR ERVL 0 457 245 337 289 88 0 chr13 37476285 37476399 -82268499 - LTR16A1 LTR ERVL -333 124 1 969 222 19 5 chr13 37476410 37476626 -82268272 - MER20 DNA MER1_type 0 219 1 252 296 0 0 chr13 37477579 37477633 -82267265 - L2 LINE L2 -3 3269 3216 21 36 0 0 chr13 37478476 37478504 -82266394 + AT_rich Low_complexity Low_complexity 1 28 0 2670 179 16 2 chr13 37479377 37479868 -82265030 + ERVL-B1 LTR ERVL 929 1426 -4338 * 4404 174 63 30 chr13 37479860 37480828 -82264070 + ERVL-B1 LTR ERVL 4758 5757 -7 1224 206 7 58 chr13 37480828 37481138 -82263760 + MLT2B1 LTR ERVL 1 294 -226 268 136 0 10 chr13 37481150 37481166 -82263732 + MLT2B3 LTR ERVL 459 474 -80 503 16 16 0 chr13 37481166 37481230 -82263668 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 268 136 0 10 chr13 37481230 37481272 -82263626 + MLT2B3 LTR ERVL 474 554 0 22 35 0 0 chr13 37481340 37481369 -82263529 + AT_rich Low_complexity Low_complexity 1 29 0 264 219 27 27 chr13 37481589 37481662 -82263236 - MIR SINE MIR -120 142 70 1430 81 0 0 chr13 37481775 37481949 -82262949 - AluSq SINE Alu -6 307 134 1922 143 24 8 chr13 37482480 37482824 -82262074 - MER7A DNA MER2_type -1 345 2 276 30 0 0 chr13 37483076 37483109 -82261789 + (TA)n Simple_repeat Simple_repeat 2 34 0 2143 103 0 10 chr13 37483110 37483402 -82261496 - AluSq SINE Alu -24 289 1 357 326 47 17 chr13 37483421 37483593 -82261305 - L1ME LINE L1 -343 5778 5602 195 338 73 0 chr13 37484371 37484439 -82260459 + MIR SINE MIR 3 75 -187 750 337 95 8 chr13 37484442 37484810 -82260088 + L3 LINE CR1 1084 1483 -94 2312 97 0 0 chr13 37486046 37486336 -82258562 + AluSc SINE Alu 1 290 -19 206 261 15 15 chr13 37486459 37486524 -82258374 + MIR SINE MIR 78 142 -120 373 248 91 16 chr13 37486999 37487120 -82257778 + LTR67 LTR ERVL 426 555 -2 204 270 79 0 chr13 37487574 37487637 -82257261 + MIR3 SINE MIR 104 171 -37 26 30 0 0 chr13 37488687 37488720 -82256178 + AT_rich Low_complexity Low_complexity 1 33 0 239 316 26 13 chr13 37488786 37488862 -82256036 - MIR3 SINE MIR -123 85 9 26 30 0 0 chr13 37488997 37489030 -82255868 + AT_rich Low_complexity Low_complexity 1 33 0 316 388 39 11 chr13 37489282 37489460 -82255438 - MIR3 SINE MIR -19 189 7 198 0 0 0 chr13 37490108 37490130 -82254768 + (A)n Simple_repeat Simple_repeat 1 22 0 28 29 0 0 chr13 37490920 37490955 -82253943 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr13 37493163 37493184 -82251714 + (CTG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr13 37501031 37501063 -82243835 + AT_rich Low_complexity Low_complexity 1 32 0 525 168 131 9 chr13 37501758 37501865 -82243033 + FLAM_C SINE Alu 1 120 -23 2067 128 28 0 chr13 37502543 37502832 -82242066 - AluSx SINE Alu -15 297 1 460 374 52 0 chr13 37503776 37503950 -82240948 + MER91A DNA MER1_type 2 184 -12 282 190 51 63 chr13 37506351 37506430 -82238468 - MIR SINE MIR -108 154 77 693 166 0 22 chr13 37506716 37506855 -82238043 - L1PA13 LINE L1 -1 6162 6027 749 343 115 32 chr13 37509931 37510421 -82234477 - L2 LINE L2 -6 3266 2818 1700 139 72 31 chr13 37510421 37510780 -82234118 - THE1C LTR MaLR 0 375 2 749 343 115 32 chr13 37510780 37511163 -82233735 - L2 LINE L2 -454 2818 2321 596 255 34 68 chr13 37511220 37511455 -82233443 + MIR SINE MIR 10 236 -26 226 194 30 0 chr13 37511526 37511593 -82233305 + CT-rich Low_complexity Low_complexity 4 72 0 260 289 0 0 chr13 37513796 37513872 -82231026 + MIR SINE MIR 184 259 -3 444 227 101 25 chr13 37513874 37513993 -82230905 + L2 LINE L2 3185 3312 -1 2203 116 0 0 chr13 37514106 37514400 -82230498 + AluSx SINE Alu 3 296 -16 2055 131 0 0 chr13 37514488 37514792 -82230106 - AluSq SINE Alu 0 304 1 22 35 0 0 chr13 37515099 37515128 -82229770 + AT_rich Low_complexity Low_complexity 1 29 0 238 242 16 0 chr13 37515146 37515208 -82229690 + (TA)n Simple_repeat Simple_repeat 1 63 0 26 0 0 0 chr13 37515239 37515265 -82229633 + AT_rich Low_complexity Low_complexity 1 26 0 1722 141 36 16 chr13 37515594 37515719 -82229179 + AluSx SINE Alu 1 122 -190 459 0 0 0 chr13 37515719 37515770 -82229128 + (CA)n Simple_repeat Simple_repeat 2 52 0 1722 141 36 16 chr13 37515770 37515950 -82228948 + AluSx SINE Alu 122 312 0 193 301 72 0 chr13 37516353 37516436 -82228462 + L2 LINE L2 3221 3309 -4 1961 84 92 3 chr13 37517642 37517926 -82226972 - AluSg SINE Alu -1 309 1 300 158 0 0 chr13 37518326 37518383 -82226515 + CT-rich Low_complexity Low_complexity 2 58 0 378 74 0 0 chr13 37518383 37518437 -82226461 + (CA)n Simple_repeat Simple_repeat 1 54 0 440 289 30 48 chr13 37518952 37519118 -82225780 + MIR SINE MIR 28 190 -72 777 223 57 33 chr13 37519543 37519754 -82225144 + MER20 DNA MER1_type 1 216 -3 201 297 81 54 chr13 37519828 37519939 -82224959 + L2 LINE L2 3199 3312 -1 955 194 65 27 chr13 37520179 37520522 -82224376 + L1MA8 LINE L1 5982 6290 -1 2028 106 3 27 chr13 37520535 37520853 -82224045 + AluSq SINE Alu 1 311 0 21 36 0 0 chr13 37521617 37521645 -82223253 + AT_rich Low_complexity Low_complexity 1 28 0 1986 140 17 0 chr13 37522240 37522540 -82222358 - AluSx SINE Alu -7 305 1 439 296 62 12 chr13 37522718 37522880 -82222018 + L3 LINE CR1 1318 1487 -90 2200 116 0 0 chr13 37523145 37523439 -82221459 - AluSx SINE Alu -8 304 11 231 333 157 0 chr13 37524543 37524696 -82220202 - MIR SINE MIR -1 261 85 2138 191 21 50 chr13 37524698 37524964 -82219934 - MLT1D LTR MaLR -2 503 258 2190 107 0 0 chr13 37524964 37525253 -82219645 - AluSq SINE Alu -24 289 1 2138 191 21 50 chr13 37525253 37525504 -82219394 - MLT1D LTR MaLR -247 258 1 1242 61 12 0 chr13 37526743 37526907 -82217991 + L1PA10 LINE L1 6001 6166 -2 245 225 102 176 chr13 37527647 37527760 -82217138 + MER5B DNA MER1_type 6 101 -77 1296 133 45 166 chr13 37527760 37528092 -82216806 - AluJo SINE Alu -10 292 1 245 225 102 176 chr13 37528092 37528165 -82216733 + MER5B DNA MER1_type 101 178 0 645 181 194 12 chr13 37528261 37528421 -82216477 - MER5A DNA MER1_type 0 189 1 2114 125 3 13 chr13 37528681 37528993 -82215905 + AluSx SINE Alu 1 309 -3 586 206 121 0 chr13 37529373 37529514 -82215384 + MER105 DNA DNA 5 162 -42 739 241 60 19 chr13 37529525 37529741 -82215157 - MIR SINE MIR -36 226 2 241 353 0 0 chr13 37530071 37530156 -82214742 - MIR SINE MIR -131 131 47 452 364 57 53 chr13 37530911 37531386 -82213512 - L2 LINE L2 0 3313 2837 2564 205 16 23 chr13 37531686 37532248 -82212650 - MER74A LTR ERVL 0 558 1 1308 120 22 0 chr13 37533029 37533241 -82211657 + AluSg/x SINE Alu 95 310 0 373 289 67 0 chr13 37533305 37533409 -82211489 + L2 LINE L2 3200 3310 -3 1556 182 7 27 chr13 37534148 37534445 -82210453 - AluJb SINE Alu -21 291 1 272 170 259 82 chr13 37534511 37534560 -82210338 - MER103 DNA DNA 0 166 127 2008 74 4 0 chr13 37534560 37534828 -82210070 - AluSp SINE Alu 0 308 40 272 170 259 82 chr13 37534828 37534912 -82209986 - MER103 DNA DNA -39 127 8 233 264 66 75 chr13 37537204 37537310 -82207588 + MER94 DNA DNA 4 108 -26 298 282 103 0 chr13 37539159 37539276 -82205622 + MER112 DNA MER1_type 98 226 -34 679 198 0 0 chr13 37539396 37539540 -82205358 - FLAM_C SINE Alu 0 144 1 200 163 0 20 chr13 37539899 37539948 -82204950 + A-rich Low_complexity Low_complexity 2 49 0 1418 171 54 54 chr13 37540215 37540471 -82204427 - Charlie1 DNA MER1_type 0 2761 2503 2289 108 0 3 chr13 37540471 37540778 -82204120 - AluSg SINE Alu -4 306 1 1418 171 54 54 chr13 37540778 37540913 -82203985 - Charlie1 DNA MER1_type -257 2504 2370 195 204 0 0 chr13 37542596 37542645 -82202253 + T-rich Low_complexity Low_complexity 1 49 0 477 339 99 66 chr13 37543468 37544016 -82200882 - L2 LINE L2 -434 2880 2294 2249 110 3 3 chr13 37544016 37544324 -82200574 + AluSx SINE Alu 1 308 -4 477 339 99 66 chr13 37544324 37544604 -82200294 - L2 LINE L2 -1020 2294 2025 607 320 30 17 chr13 37544609 37544843 -82200055 + MIR SINE MIR 17 253 -9 203 156 0 0 chr13 37544893 37544925 -82199973 + (CAT)n Simple_repeat Simple_repeat 2 33 0 225 343 145 14 chr13 37544973 37545180 -82199718 - L2 LINE L2 -1344 1970 1737 445 196 203 8 chr13 37546763 37546896 -82198002 - MIR SINE MIR -54 208 50 455 332 15 19 chr13 37548171 37548430 -82196468 - HAL1 LINE L1 -2203 304 47 222 180 0 0 chr13 37549017 37549078 -82195820 + (TA)n Simple_repeat Simple_repeat 1 61 0 189 274 264 19 chr13 37549515 37549621 -82195277 + L2 LINE L2 3141 3272 0 1251 161 32 0 chr13 37549936 37550153 -82194745 - AluJo SINE Alu -5 307 84 195 0 39 0 chr13 37550212 37550238 -82194660 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2272 84 0 3 chr13 37550238 37550524 -82194374 - AluSq SINE Alu -1 310 1 27 73 0 0 chr13 37550942 37550997 -82193901 + AT_rich Low_complexity Low_complexity 1 55 0 297 0 0 0 chr13 37553128 37553161 -82191737 + (TG)n Simple_repeat Simple_repeat 2 34 0 243 61 0 0 chr13 37553222 37553255 -82191643 + (CA)n Simple_repeat Simple_repeat 2 34 0 361 306 25 12 chr13 37554300 37554460 -82190438 - MER103 DNA DNA -1 165 4 812 143 15 170 chr13 37555253 37555512 -82189386 - MER20 DNA MER1_type 0 219 1 1212 96 28 11 chr13 37555902 37556079 -82188819 + THE1B LTR MaLR 1 180 -184 2199 148 42 10 chr13 37556083 37556424 -82188474 - L1MA4 LINE L1 -369 5931 5575 1836 131 4 15 chr13 37556424 37556698 -82188200 - AluSx SINE Alu -10 302 32 2199 148 42 10 chr13 37556698 37556742 -82188156 - L1MA4 LINE L1 -725 5575 5534 1670 185 3 10 chr13 37556744 37557065 -82187833 - L1MC/D LINE L1 -459 5783 5474 297 0 0 0 chr13 37557597 37557630 -82187268 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 354 0 0 chr13 37557880 37557962 -82186936 + CT-rich Low_complexity Low_complexity 5 86 0 24 53 0 0 chr13 37558131 37558169 -82186729 + AT_rich Low_complexity Low_complexity 1 38 0 29 90 0 0 chr13 37558875 37558953 -82185945 + AT_rich Low_complexity Low_complexity 1 78 0 299 0 73 0 chr13 37559689 37559730 -82185168 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 405 0 0 0 chr13 37560591 37560636 -82184262 + (ATG)n Simple_repeat Simple_repeat 2 46 0 2215 104 0 0 chr13 37560653 37560933 -82183965 - AluSg SINE Alu -30 280 1 2590 188 104 38 chr13 37561923 37562257 -82182641 + MER82 DNA MER2_type 1 312 -341 2162 104 0 41 chr13 37562257 37562573 -82182325 - AluSx SINE Alu -9 303 1 2590 188 104 38 chr13 37562573 37562845 -82182053 + MER82 DNA MER2_type 312 647 -6 2026 126 24 0 chr13 37563324 37563618 -82181280 - AluSx SINE Alu -9 303 3 853 215 0 0 chr13 37564619 37564782 -82180116 + FRAM SINE Alu 1 163 -3 28 0 0 0 chr13 37567216 37567244 -82177654 + AT_rich Low_complexity Low_complexity 1 28 0 297 290 56 48 chr13 37567817 37568052 -82176846 - MIR3 SINE MIR -12 250 15 2260 87 17 0 chr13 37568178 37568467 -82176431 - AluSp SINE Alu -19 294 1 358 374 69 24 chr13 37568762 37569094 -82175804 - L1ME LINE L1 -449 5672 5326 22 56 0 0 chr13 37570188 37570224 -82174674 + AT_rich Low_complexity Low_complexity 1 36 0 2480 67 0 0 chr13 37570644 37570942 -82173956 - AluY SINE Alu -13 298 1 264 292 0 15 chr13 37572590 37572655 -82172243 - L2 LINE L2 0 3313 3250 312 246 200 9 chr13 37572751 37572861 -82172037 - MIR SINE MIR -130 132 2 215 336 28 9 chr13 37572880 37572987 -82171911 - MIR SINE MIR -148 114 6 514 254 8 8 chr13 37573735 37573853 -82171045 + L2 LINE L2 3196 3313 0 192 97 0 0 chr13 37573994 37574025 -82170873 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1717 154 29 4 chr13 37574029 37574309 -82170589 - AluJb SINE Alu -25 287 1 204 82 41 20 chr13 37575732 37575781 -82169117 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 194 32 0 chr13 37575869 37575962 -82168936 + (TA)n Simple_repeat Simple_repeat 1 96 0 753 172 0 0 chr13 37575968 37576090 -82168808 - FLAM_C SINE Alu -21 122 1 189 107 0 0 chr13 37576591 37576619 -82168279 + (A)n Simple_repeat Simple_repeat 1 28 0 188 243 108 14 chr13 37677194 37677268 -82067630 - MIR SINE MIR -109 153 73 701 322 90 52 chr13 37677682 37678719 -82066179 + L2 LINE L2 2175 3272 0 28 29 0 0 chr13 37678733 37678768 -82066130 + AT_rich Low_complexity Low_complexity 1 35 0 1383 153 133 7 chr13 37679118 37679418 -82065480 - MER44D DNA MER2_type -1 608 1 2252 93 3 7 chr13 37679477 37679766 -82065132 - AluSx SINE Alu -24 288 1 371 282 200 12 chr13 37680234 37680404 -82064494 + MIR SINE MIR 32 233 -29 2011 125 0 29 chr13 37681253 37681565 -82063333 - AluSx SINE Alu -9 303 1 2483 73 0 10 chr13 37681578 37681891 -82063007 - AluSg SINE Alu 0 310 1 2481 60 7 0 chr13 37681891 37682191 -82062707 - AluSq SINE Alu -11 302 1 300 332 183 30 chr13 37684622 37684923 -82059975 + L2 LINE L2 2925 3271 -1 281 352 23 8 chr13 37685192 37685320 -82059578 + MER5B DNA MER1_type 1 130 -48 467 179 32 21 chr13 37685327 37685422 -82059476 - L1MC1 LINE L1 -9 6324 6229 526 307 56 42 chr13 37685518 37685733 -82059165 - MIR SINE MIR -34 228 11 25 31 0 0 chr13 37686090 37686122 -82058776 + AT_rich Low_complexity Low_complexity 1 32 0 522 315 90 2 chr13 37686398 37686811 -82058087 + L1M4 LINE L1 3719 4167 -1979 228 85 38 66 chr13 37687695 37687801 -82057097 + (TAAA)n Simple_repeat Simple_repeat 1 103 0 320 250 0 0 chr13 37688353 37688433 -82056465 - Tigger2a DNA MER2_type -354 80 1 607 283 124 13 chr13 37689767 37689993 -82054905 - MIR SINE MIR 0 262 12 292 148 19 0 chr13 37690620 37690674 -82054224 + MER116 DNA Mariner 1 55 -25 1631 165 77 9 chr13 37691273 37691613 -82053285 - MLT2C1 LTR ERVL 0 397 35 692 258 50 0 chr13 37691632 37691814 -82053084 - MIR SINE MIR -59 203 13 6015 166 10 33 chr13 37693109 37694221 -82050677 + L1PA15-16 LINE L1 1 1086 -5763 1975 197 29 30 chr13 37694234 37694957 -82049941 + L1PA15-16 LINE L1 2721 3447 -3402 2856 161 25 20 chr13 37696408 37697333 -82047565 + L1M2 LINE L1 4808 5727 -573 12558 145 19 59 chr13 37697437 37699596 -82045302 + L1PA12 LINE L1 482 3739 -3845 237 33 0 0 chr13 37699596 37699626 -82045272 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 12558 145 19 59 chr13 37699626 37700176 -82044722 + L1PA12 LINE L1 3739 4310 -3274 34 0 0 0 chr13 37700311 37700345 -82044553 + AT_rich Low_complexity Low_complexity 1 34 0 2374 78 0 3 chr13 37701618 37701939 -82042959 + L1PB1 LINE L1 5832 6151 0 295 319 7 14 chr13 37701960 37702101 -82042797 - MER112 DNA MER1_type -104 156 17 190 278 33 56 chr13 37703544 37703634 -82041264 + MIR SINE MIR 47 134 -128 272 329 65 26 chr13 37704916 37705147 -82039751 - MIR SINE MIR 0 262 23 22 35 0 0 chr13 37705406 37705435 -82039463 + AT_rich Low_complexity Low_complexity 1 29 0 319 322 153 6 chr13 37705620 37705803 -82039095 - MIR SINE MIR -6 256 47 183 219 98 0 chr13 37705880 37705921 -82038977 + L2 LINE L2 3267 3311 -2 397 179 84 0 chr13 37707507 37707602 -82037296 - L1MA9 LINE L1 -37 6275 6173 608 308 70 12 chr13 37708161 37708489 -82036409 + MER41E LTR ERV1 166 512 0 195 42 0 0 chr13 37708509 37708533 -82036365 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 2129 114 3 10 chr13 37708533 37708823 -82036075 - AluSp SINE Alu -25 288 1 2276 110 0 0 chr13 37709349 37709648 -82035250 + AluSq SINE Alu 1 299 -14 26 30 0 0 chr13 37711511 37711544 -82033354 + AT_rich Low_complexity Low_complexity 1 33 0 272 308 208 23 chr13 37712061 37712282 -82032616 + L2 LINE L2 2829 3090 -182 520 233 70 0 chr13 37712810 37712982 -82031916 - L1MC4 LINE L1 -389 7653 7470 399 151 0 0 chr13 37712993 37713066 -82031832 - L1PA16 LINE L1 -22 6144 6072 274 262 0 48 chr13 37713067 37713170 -82031728 - L1MC4 LINE L1 -558 7484 7387 315 123 0 18 chr13 37713171 37713228 -82031670 - L1MC4a LINE L1 -590 7218 7163 270 182 68 45 chr13 37713212 37713300 -82031598 - L1MC4 LINE L1 -937 7105 7016 * 3609 137 42 14 chr13 37713354 37713480 -82031418 - Tigger2 DNA MER2_type -2033 685 564 2086 123 0 3 chr13 37713480 37713794 -82031104 + AluSq SINE Alu 1 313 0 3609 137 42 14 chr13 37713794 37714331 -82030567 - Tigger2 DNA MER2_type -2154 564 2 266 216 68 45 chr13 37714331 37714385 -82030513 - L1MC4 LINE L1 -1506 6536 6478 4264 154 61 12 chr13 37714385 37715209 -82029689 - MER6 DNA MER2_type -1 864 1 266 216 68 45 chr13 37715209 37715242 -82029656 - L1MC4 LINE L1 -1564 6478 6447 303 248 165 8 chr13 37715681 37715802 -82029096 - L1M4 LINE L1 -1489 4657 4518 411 231 121 40 chr13 37715848 37716195 -82028703 - L1M4 LINE L1 -1695 4451 4077 1430 226 57 65 chr13 37716277 37716782 -82028116 - MLT1E1 LTR MaLR 0 654 154 305 260 10 0 chr13 37716876 37716976 -82027922 - L1M4 LINE L1 -2154 3992 3892 839 168 0 0 chr13 37716988 37717119 -82027779 - AluJb SINE Alu -16 296 166 2056 174 30 123 chr13 37717127 37717786 -82027112 - LTR9 LTR ERV1 -14 598 1 487 128 90 0 chr13 37717786 37717864 -82027034 - AluJb SINE Alu -143 169 85 22 0 0 0 chr13 37718148 37718170 -82026728 + AT_rich Low_complexity Low_complexity 1 22 0 267 152 80 24 chr13 37718185 37718310 -82026588 + (TA)n Simple_repeat Simple_repeat 1 132 0 319 265 110 40 chr13 37718313 37718513 -82026385 - L1MEc LINE L1 -4708 2117 1904 2519 47 0 0 chr13 37718566 37718866 -82026032 - AluY SINE Alu -11 300 1 325 242 78 33 chr13 37718923 37719076 -82025822 - L1MEc LINE L1 -5018 1616 1457 737 169 16 0 chr13 37719276 37719400 -82025498 - AluJb SINE Alu -186 126 1 1254 228 94 32 chr13 37720750 37721123 -82023775 - MSTD LTR MaLR 0 396 1 879 193 113 0 chr13 37721123 37721336 -82023562 - MSTD-int LTR MaLR 0 1735 1499 1577 199 48 3 chr13 37721481 37721772 -82023126 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr13 37721965 37721993 -82022905 + AT_rich Low_complexity Low_complexity 1 28 0 201 312 32 32 chr13 37723806 37723899 -82020999 + MIR3 SINE MIR 4 96 -112 310 329 12 59 chr13 37723961 37724131 -82020767 - L2 LINE L2 -2 3311 3150 1564 143 8 0 chr13 37724137 37724402 -82020496 + Tigger3b DNA MER2_type 139 405 -826 1047 155 0 0 chr13 37724402 37724595 -82020303 + L1 LINE L1 5043 5235 -911 237 68 23 0 chr13 37724595 37724639 -82020259 + Tigger3(Golem) DNA MER2_type 279 323 -2706 1171 197 79 78 chr13 37724744 37725429 -82019469 - LTR1B LTR ERV1 -81 745 2 3168 127 231 11 chr13 37725458 37726180 -82018718 + Tigger3(Golem) DNA MER2_type 2148 3028 -1 378 314 36 23 chr13 37726184 37726404 -82018494 - L2 LINE L2 -1041 2273 2051 2521 196 144 43 chr13 37727956 37728706 -82016192 - LTR1B LTR ERV1 0 826 1 2801 138 15 4 chr13 37728819 37729275 -82015623 + MER4C LTR ERV1 1 461 -4 2511 252 63 49 chr13 37730372 37731327 -82013571 - L1MEc LINE L1 -5573 969 2 3344 94 12 2 chr13 37732123 37732604 -82012294 - LTR19A LTR ERV1 0 486 1 218 254 68 0 chr13 37732605 37732664 -82012234 + MIR SINE MIR 159 221 -41 202 350 0 0 chr13 37733632 37733692 -82011206 + MER91A DNA MER1_type 19 78 -118 262 312 0 0 chr13 37733702 37733779 -82011119 - MER63 DNA MER1_type -1 1060 984 2283 196 69 12 chr13 37733967 37734472 -82010426 + MER74A LTR ERVL 25 558 0 739 196 20 0 chr13 37734691 37734844 -82010054 + MER74A LTR ERVL 224 379 -179 2269 93 0 7 chr13 37735994 37736283 -82008615 + AluSp SINE Alu 9 295 -18 279 203 0 0 chr13 37736299 37736358 -82008540 + (TATG)n Simple_repeat Simple_repeat 2 60 0 550 323 0 12 chr13 37742629 37742796 -82002102 - MIR3 SINE MIR -11 197 33 21 36 0 0 chr13 37743433 37743461 -82001437 + AT_rich Low_complexity Low_complexity 1 28 0 414 346 27 11 chr13 37743500 37743685 -82001213 - MIR SINE MIR 0 262 75 1618 173 45 14 chr13 37744000 37744289 -82000609 - AluJo SINE Alu -14 298 1 316 330 0 29 chr13 37745037 37745140 -81999758 - L2 LINE L2 -25 3247 3148 328 277 69 5 chr13 37746802 37746936 -81997962 - MIR SINE MIR -51 157 2 434 305 106 0 chr13 37749189 37749330 -81995568 - MIR3 SINE MIR -7 201 46 2329 175 37 2 chr13 37750227 37750684 -81994214 - L1MB8 LINE L1 -9 6169 5697 268 257 0 40 chr13 37753193 37753267 -81991631 + L2 LINE L2 3243 3313 0 505 275 163 0 chr13 37754223 37754383 -81990515 + MIR SINE MIR 75 260 -2 2463 149 112 78 chr13 37754653 37755189 -81989709 + MLT2B3 LTR ERVL 1 554 0 1436 42 6 0 chr13 37756001 37756167 -81988731 - AluSp SINE Alu -12 301 135 183 42 0 0 chr13 37756167 37756191 -81988707 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 2084 88 3 18 chr13 37756191 37756474 -81988424 - AluSx SINE Alu -32 280 2 296 287 79 30 chr13 37756811 37756912 -81987986 - MIR SINE MIR -155 107 2 204 228 18 97 chr13 37757550 37757664 -81987234 + GA-rich Low_complexity Low_complexity 1 105 0 2189 108 13 22 chr13 37758558 37758873 -81986025 + AluSq SINE Alu 1 312 -1 1701 202 98 7 chr13 37758885 37759336 -81985562 + Charlie1b DNA MER1_type 27 518 -5 2318 103 0 0 chr13 37759337 37759629 -81985269 + AluSx SINE Alu 1 292 -20 527 250 85 0 chr13 37759681 37759845 -81985053 - MER58B DNA MER1_type -11 330 153 252 86 0 0 chr13 37760443 37760478 -81984420 + (A)n Simple_repeat Simple_repeat 1 35 0 189 263 35 0 chr13 37761028 37761085 -81983813 + L2 LINE L2 3186 3244 -28 24 53 0 0 chr13 37762229 37762267 -81982631 + AT_rich Low_complexity Low_complexity 1 38 0 254 276 207 0 chr13 37762944 37763031 -81981867 + MIR SINE MIR 9 113 -149 3007 215 18 8 chr13 37763289 37763945 -81980953 - L1 LINE L1 -2096 4050 3388 1894 161 92 34 chr13 37763945 37764325 -81980573 + MSTB1 LTR MaLR 1 402 -30 822 194 117 4 chr13 37764334 37764582 -81980316 - L1 LINE L1 -2758 3388 3113 450 218 61 0 chr13 37764581 37764728 -81980170 + L1M1 LINE L1 2419 2574 -4992 * 467 217 17 25 chr13 37764727 37764847 -81980051 + L1 LINE L1 15 133 -7432 * 3351 204 104 3 chr13 37764846 37765813 -81979085 + L1 LINE L1 1107 2219 -5346 10932 194 29 14 chr13 37765990 37768470 -81976428 + L1 LINE L1 3881 6397 -1168 1748 154 3 3 chr13 37768626 37768912 -81975986 + Tigger1 DNA MER2_type 1307 1592 -826 743 129 0 91 chr13 37768913 37769045 -81975853 + FLAM_C SINE Alu 2 121 -22 180 0 0 0 chr13 37769045 37769065 -81975833 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 366 23 0 0 chr13 37769066 37769109 -81975789 + (TA)n Simple_repeat Simple_repeat 2 44 0 4424 146 71 12 chr13 37769119 37769898 -81975000 + Tigger1 DNA MER2_type 1589 2413 -5 377 164 0 0 chr13 37769905 37769966 -81974932 + L1M1 LINE L1 2907 2967 -4599 2371 104 0 0 chr13 37822155 37822462 -81922436 - AluSx SINE Alu -5 307 1 319 258 188 0 chr13 37822884 37823012 -81921886 - L1ME LINE L1 -468 5653 5502 371 258 75 19 chr13 37823551 37823764 -81921134 - L1MC4a LINE L1 -1906 5902 5678 207 250 191 15 chr13 37824738 37824806 -81920092 - L2 LINE L2 -2 3270 3191 388 156 0 0 chr13 37824809 37824873 -81920025 + LTR8A LTR ERV1 664 727 0 202 241 52 0 chr13 37825103 37825161 -81919737 - MIR3 SINE MIR -25 183 123 1392 259 27 11 chr13 37825686 37826160 -81918738 + L1ME4a LINE L1 5402 5883 -279 543 119 0 0 chr13 37826173 37826257 -81918641 + MER67D LTR ERV1 26 109 -405 22 109 0 0 chr13 37826257 37826349 -81918549 + AT_rich Low_complexity Low_complexity 1 92 0 1028 186 70 0 chr13 37826376 37826591 -81918307 + MER67C LTR ERV1 114 343 -367 1519 156 38 38 chr13 37826611 37826958 -81917940 + MER4A LTR ERV1 1 347 -317 286 167 17 17 chr13 37827078 37827138 -81917760 + MER4C LTR ERV1 296 355 -110 237 136 23 0 chr13 37827135 37827179 -81917719 + MER4A LTR ERV1 603 647 -17 * 582 249 66 6 chr13 37827229 37827410 -81917488 + MER67D LTR ERV1 319 510 -4 2138 154 30 0 chr13 37828433 37828771 -81916127 + MER7A DNA MER2_type 1 346 0 2083 122 3 29 chr13 37829147 37829459 -81915439 + AluSx SINE Alu 1 304 -8 269 207 11 23 chr13 37829809 37829896 -81915002 + L1ME4a LINE L1 5929 6014 -107 336 83 0 0 chr13 37829896 37829944 -81914954 + (T)n Simple_repeat Simple_repeat 1 48 0 1788 134 67 23 chr13 37830042 37830341 -81914557 - AluSx SINE Alu 0 312 1 448 250 45 51 chr13 37830778 37830954 -81913944 + MER5A DNA MER1_type 9 183 -6 490 275 60 40 chr13 37831065 37831247 -81913651 + MER63A DNA MER1_type 2 190 -1498 1551 144 118 11 chr13 37831247 37831517 -81913381 + AluSg SINE Alu 1 299 -11 490 275 60 40 chr13 37831517 37831534 -81913364 + MER63A DNA MER1_type 190 205 -5 22 0 0 0 chr13 37831576 37831598 -81913300 + AT_rich Low_complexity Low_complexity 1 22 0 407 131 58 22 chr13 37831658 37831795 -81913103 + (TA)n Simple_repeat Simple_repeat 2 143 0 633 94 41 18 chr13 37831797 37831968 -81912930 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 394 91 51 51 chr13 37831988 37832163 -81912735 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 408 128 35 50 chr13 37832296 37832554 -81912344 + (TTATA)n Simple_repeat Simple_repeat 1 254 0 1765 167 19 19 chr13 37832984 37833296 -81911602 - AluJb SINE Alu 0 312 1 216 80 20 40 chr13 37833397 37833447 -81911451 + (CA)n Simple_repeat Simple_repeat 1 49 0 378 268 41 8 chr13 37833466 37833589 -81911309 + MIR SINE MIR 92 218 -44 451 306 113 21 chr13 37834655 37834965 -81909933 + L2 LINE L2 2664 2944 -369 840 264 4 51 chr13 37834965 37835062 -81909836 + MER58A DNA MER1_type 1 101 -2319 1967 164 3 16 chr13 37835062 37835372 -81909526 - AluJb SINE Alu -6 306 1 840 264 4 51 chr13 37835372 37835509 -81909389 + MER58A DNA MER1_type 101 224 0 451 306 113 21 chr13 37835509 37835630 -81909268 + L2 LINE L2 2944 3313 0 190 116 47 0 chr13 37835850 37835893 -81909005 + (TTATA)n Simple_repeat Simple_repeat 2 46 0 1364 182 0 0 chr13 37836018 37836243 -81908655 + AluSg/x SINE Alu 85 309 -3 762 267 69 40 chr13 37836523 37836770 -81908128 + MIR SINE MIR 9 262 0 1909 141 6 31 chr13 37837732 37838052 -81906846 - AluSx SINE Alu 0 312 1 2310 78 10 13 chr13 37838412 37838718 -81906180 - AluSx SINE Alu -7 305 1 236 310 54 39 chr13 37838743 37838872 -81906026 + L2 LINE L2 2190 2320 -994 2426 86 0 0 chr13 37839208 37839509 -81905389 + AluSc SINE Alu 1 301 -8 276 313 74 79 chr13 37839629 37840061 -81904837 - L1ME LINE L1 -424 5746 5317 14992 144 48 14 chr13 37840113 37842756 -81902142 - Tigger4(Zombi) DNA MER2_type 0 2731 1 21 36 0 0 chr13 37842917 37842945 -81901953 + AT_rich Low_complexity Low_complexity 1 28 0 304 259 65 22 chr13 37843027 37843166 -81901732 - L1ME LINE L1 -1428 4718 4574 2364 81 0 19 chr13 37843235 37843545 -81901353 - AluY SINE Alu -7 304 1 1778 171 0 52 chr13 37843674 37844002 -81900896 + AluJb SINE Alu 1 311 -1 248 266 25 0 chr13 37844131 37844210 -81900688 - L1ME LINE L1 -1956 4190 4110 40870 30 21 6 chr13 37844316 37850374 -81894524 - L1PA2 LINE L1 -3 6152 3 407 285 80 45 chr13 37850431 37850743 -81894155 - L1ME LINE L1 -2203 3943 3621 3528 154 116 13 chr13 37850925 37851708 -81893190 + MER6 DNA MER2_type 2 865 0 2429 111 53 2 chr13 37851933 37852329 -81892569 + MER57B LTR ERV1 10 425 -9 211 322 33 25 chr13 37852721 37852842 -81892056 + L2 LINE L2 2736 2857 -457 203 349 96 12 chr13 37858555 37858638 -81886260 + L2 LINE L2 3144 3233 -39 553 313 71 5 chr13 37859739 37859950 -81884948 - MIR SINE MIR -31 231 7 318 378 0 9 chr13 37860158 37860269 -81884629 - MIR3 SINE MIR -96 112 3 396 0 0 0 chr13 37861972 37862016 -81882882 + (CA)n Simple_repeat Simple_repeat 2 45 0 267 327 45 14 chr13 37862237 37862457 -81882441 + HAL1 LINE L1 1231 1457 -1050 2239 97 6 50 chr13 37862830 37863151 -81881747 + AluSp SINE Alu 1 307 -6 24 0 0 0 chr13 37863409 37863433 -81881465 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 37863549 37863577 -81881321 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 37864211 37864243 -81880655 + AT_rich Low_complexity Low_complexity 1 32 0 365 289 22 22 chr13 37864269 37864404 -81880494 + L1ME LINE L1 5454 5588 -533 208 247 72 82 chr13 37865256 37865353 -81879545 + MER5B DNA MER1_type 64 159 -19 248 291 13 0 chr13 37865599 37865678 -81879220 - HsTC2 DNA Tc2 -1811 87 8 783 297 40 11 chr13 37867805 37868081 -81876817 + L2 LINE L2 1025 1308 -2006 1233 151 5 10 chr13 37868545 37868744 -81876154 + MER2 DNA MER2_type 13 210 -135 205 152 196 0 chr13 37868782 37868828 -81876070 + L2 LINE L2 1382 1436 -1878 1855 245 106 4 chr13 37869056 37869538 -81875360 + MLT1F LTR MaLR 1 531 -11 380 231 162 0 chr13 37869568 37869685 -81875213 + MER103 DNA DNA 12 147 -19 191 268 169 0 chr13 37870476 37870547 -81874351 - L2 LINE L2 -63 3250 3168 329 250 58 48 chr13 37870637 37870741 -81874157 + L2 LINE L2 3208 3312 -1 214 267 48 0 chr13 37870759 37870864 -81874034 + (TA)n Simple_repeat Simple_repeat 2 111 0 594 227 105 6 chr13 37870954 37871126 -81873772 - L1ME LINE L1 -390 5731 5543 21 57 0 0 chr13 37872188 37872223 -81872675 + AT_rich Low_complexity Low_complexity 1 35 0 286 321 67 15 chr13 37872549 37872683 -81872215 - MIR SINE MIR -31 231 91 213 39 0 0 chr13 37872971 37872997 -81871901 + (A)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr13 37873105 37873130 -81871768 + AT_rich Low_complexity Low_complexity 1 25 0 363 176 199 37 chr13 37873546 37873682 -81871216 + MER103 DNA DNA 2 159 -7 348 250 70 16 chr13 37873823 37873951 -81870947 - Charlie2a DNA MER1_type -1 2861 2727 516 233 100 0 chr13 37873973 37874123 -81870775 - Charlie2a DNA MER1_type -1224 1638 1474 226 246 0 18 chr13 37874193 37874250 -81870648 - Charlie2b DNA MER1_type -2109 673 618 1095 160 5 30 chr13 37874250 37874450 -81870448 - AluJo SINE Alu -117 195 1 239 138 155 35 chr13 37874455 37874513 -81870385 - Charlie2b DNA MER1_type -2158 624 560 434 259 117 19 chr13 37874570 37874732 -81870166 - Charlie2b DNA MER1_type -2640 222 45 604 170 236 0 chr13 37874791 37874956 -81869942 - MER3 DNA MER1_type 0 209 6 813 238 0 5 chr13 37875502 37875687 -81869211 - MER3 DNA MER1_type -25 184 1 2190 108 7 0 chr13 37876646 37876943 -81867955 - AluSq SINE Alu -14 299 1 186 219 98 0 chr13 37878303 37878344 -81866554 - L2 LINE L2 -2 3311 3267 317 322 153 6 chr13 37878421 37878604 -81866294 + MIR SINE MIR 47 256 -6 22 35 0 0 chr13 37878789 37878818 -81866080 + AT_rich Low_complexity Low_complexity 1 29 0 263 329 65 26 chr13 37879077 37879308 -81865590 + MIR SINE MIR 23 262 0 188 278 33 56 chr13 37880590 37880680 -81864218 - MIR SINE MIR -128 134 47 2358 53 0 41 chr13 37883617 37883936 -81860962 + AluY SINE Alu 1 306 -5 26 30 0 0 chr13 37886048 37886081 -81858817 + AT_rich Low_complexity Low_complexity 1 33 0 1275 211 127 42 chr13 37886990 37887416 -81857482 - MLT1C LTR MaLR 0 467 6 354 23 0 0 chr13 37887949 37887992 -81856906 + (TG)n Simple_repeat Simple_repeat 2 44 0 327 177 16 0 chr13 37889209 37889271 -81855627 - MIR SINE MIR -43 219 157 2303 46 42 7 chr13 37889772 37890057 -81854841 + AluY SINE Alu 2 296 -15 193 240 95 32 chr13 37890533 37890635 -81854263 + MIR SINE MIR 31 145 -63 330 352 31 44 chr13 37892136 37892363 -81852535 - L2 LINE L2 -98 3174 2951 204 158 0 0 chr13 37892554 37892592 -81852306 + T-rich Low_complexity Low_complexity 2 39 0 239 235 226 20 chr13 37893092 37893194 -81851704 + MIR SINE MIR 68 190 -72 441 65 0 0 chr13 37894262 37894324 -81850574 - Alu SINE Alu -7 304 243 1919 60 0 28 chr13 37894332 37894582 -81850316 - AluY SINE Alu -40 271 29 216 106 0 64 chr13 37895788 37895835 -81849063 + (TTTAA)n Simple_repeat Simple_repeat 3 46 0 278 336 161 27 chr13 37896348 37896571 -81848327 + L3 LINE CR1 869 1121 -456 2115 168 34 31 chr13 37896587 37897135 -81847763 + MLT2A2 LTR ERVL 1 554 0 251 252 221 38 chr13 37897183 37897314 -81847584 + L3 LINE CR1 1264 1418 -159 626 293 107 18 chr13 37897328 37897553 -81847345 + MIR SINE MIR 4 248 -14 494 292 109 58 chr13 37897993 37898370 -81846528 + MLT1J LTR MaLR 108 503 -8 246 161 43 65 chr13 37898635 37898728 -81846170 + (TTTAA)n Simple_repeat Simple_repeat 4 94 0 272 264 85 54 chr13 37898820 37898949 -81845949 - L1M4 LINE L1 -1999 4147 4015 3227 155 21 3 chr13 37899648 37900215 -81844683 - L1PA16 LINE L1 -8 7596 7020 1246 136 0 0 chr13 37900217 37900408 -81844490 + AluSc SINE Alu 115 305 -4 11076 197 27 129 chr13 37900409 37902726 -81842172 - L1PA16 LINE L1 -580 7024 4473 1161 207 0 0 chr13 37902726 37902939 -81841959 - AluSg/x SINE Alu -14 296 84 11076 197 27 129 chr13 37902939 37903785 -81841113 - L1PA16 LINE L1 -3131 4473 3543 344 21 0 0 chr13 37903785 37903833 -81841065 - AluSp/q SINE Alu 0 303 256 1104 112 7 0 chr13 37903833 37903985 -81840913 - AluSp SINE Alu -160 153 1 11076 197 27 129 chr13 37903985 37904982 -81839916 - L1PA16 LINE L1 -4059 3545 2938 1396 207 13 167 chr13 37905021 37905522 -81839376 - L1PA16 LINE L1 -4893 2681 2256 26 50 0 0 chr13 37905531 37905571 -81839327 + AT_rich Low_complexity Low_complexity 1 40 0 443 296 28 22 chr13 37906352 37906531 -81838367 - L1PA16 LINE L1 -5268 2306 2127 1437 312 58 28 chr13 37906544 37907111 -81837787 - L1PA16 LINE L1 -6203 1371 788 659 191 76 0 chr13 37907400 37907557 -81837341 + MER3 DNA MER1_type 37 205 -4 4706 178 45 24 chr13 37908276 37909412 -81835486 - L1MB2 LINE L1 -1 6170 5059 1651 162 0 54 chr13 37909412 37909746 -81835152 - AluJb SINE Alu 0 318 1 4706 178 45 24 chr13 37909746 37910011 -81834887 - L1MB2 LINE L1 -1112 5059 4801 2093 138 3 13 chr13 37910011 37910323 -81834575 - AluSx SINE Alu -3 309 1 4706 178 45 24 chr13 37910323 37910804 -81834094 - L1MB2 LINE L1 -1370 4801 4237 372 22 0 0 chr13 37910804 37910849 -81834049 + (TG)n Simple_repeat Simple_repeat 2 46 0 4706 178 45 24 chr13 37910849 37910985 -81833913 - L1MB2 LINE L1 -1934 4237 4105 184 360 40 0 chr13 37911291 37911366 -81833532 - MIR3 SINE MIR -129 79 2 1879 141 59 3 chr13 37911415 37911705 -81833193 + AluSx SINE Alu 1 306 -6 392 338 48 0 chr13 37912145 37912290 -81832608 + L1ME LINE L1 5487 5638 -483 676 263 125 22 chr13 37912326 37912558 -81832340 - MIR SINE MIR 0 262 7 645 263 117 24 chr13 37912862 37913075 -81831823 - MIR SINE MIR 0 262 30 1867 142 43 43 chr13 37913294 37913668 -81831230 + THE1C LTR MaLR 1 374 -1 37 81 0 0 chr13 37913739 37913825 -81831073 + AT_rich Low_complexity Low_complexity 1 86 0 1046 310 60 8 chr13 37913893 37914258 -81830640 + L2 LINE L2 1993 2376 -938 915 98 21 0 chr13 37914436 37914579 -81830319 - MER2 DNA MER2_type -135 210 65 609 191 52 0 chr13 37914582 37914697 -81830201 - MER2 DNA MER2_type -224 121 1 659 260 126 36 chr13 37914700 37914977 -81829921 + L2 LINE L2 3005 3306 -7 246 220 17 0 chr13 37915745 37915804 -81829094 + MLT1D LTR MaLR 284 343 -162 712 233 57 25 chr13 37915810 37916089 -81828809 + L1MEc LINE L1 1542 1829 -4567 915 310 64 12 chr13 37916110 37916532 -81828366 + L1M2 LINE L1 3 446 -6403 1335 199 3 43 chr13 37917266 37917568 -81827330 + L1PA16 LINE L1 444 733 -6116 12116 227 30 12 chr13 37918039 37923307 -81821591 + L1PA16 LINE L1 1427 6860 -9 2373 253 48 19 chr13 37923346 37924602 -81820296 + L1MEc LINE L1 1864 3124 -3091 833 101 51 70 chr13 37924605 37924657 -81820241 + MER41A LTR ERV1 400 451 -103 2234 80 0 0 chr13 37924657 37924932 -81819966 + AluSc SINE Alu 35 309 0 833 101 51 70 chr13 37924932 37925037 -81819861 + MER41A LTR ERV1 451 554 0 5369 119 27 30 chr13 37925037 37925668 -81819230 + MER41A-int LTR ERV1 1 632 -5314 2304 92 16 0 chr13 37925668 37925973 -81818925 - AluSg SINE Alu 0 310 1 5369 119 27 30 chr13 37925973 37926926 -81817972 + MER41A-int LTR ERV1 632 1668 -4278 4661 112 35 18 chr13 37926969 37927880 -81817018 + MER41A-int LTR ERV1 1944 2946 -3000 * 12181 103 28 18 chr13 37927862 37930159 -81814739 + MER41B-int LTR ERV1 4092 5941 -5 3435 119 9 11 chr13 37930170 37930718 -81814180 + MER41B LTR ERV1 1 547 -88 356 238 139 5 chr13 37930726 37930949 -81813949 + L1MEc LINE L1 3116 3368 -2847 259 220 57 4 chr13 37930964 37931066 -81813832 - L1ME2 LINE L1 -63 6103 5998 25 31 0 0 chr13 37931134 37931166 -81813732 + AT_rich Low_complexity Low_complexity 1 32 0 779 175 58 0 chr13 37931203 37931357 -81813541 - MER58B DNA MER1_type -12 329 167 803 226 53 43 chr13 37931359 37931682 -81813216 + L1ME2 LINE L1 5829 6154 -10 285 183 42 42 chr13 37933646 37933717 -81811181 - MIR SINE MIR -128 134 64 196 244 22 0 chr13 37933717 37933762 -81811136 - MIR SINE MIR -155 107 62 952 240 69 38 chr13 37934043 37934435 -81810463 - MER96B DNA MER1_type? -1 416 13 273 250 229 14 chr13 37934558 37934698 -81810200 - MIR SINE MIR -65 197 28 26 0 0 0 chr13 37935215 37935241 -81809657 + AT_rich Low_complexity Low_complexity 1 26 0 247 309 21 31 chr13 37935721 37935818 -81809080 + L2 LINE L2 3208 3303 -10 2113 127 0 7 chr13 37936418 37936717 -81808181 - AluSg SINE Alu -13 297 1 250 184 0 41 chr13 37936983 37937032 -81807866 + MER5B DNA MER1_type 8 54 -124 401 347 84 22 chr13 37937342 37937662 -81807236 - L2 LINE L2 -743 2571 2232 236 64 21 43 chr13 37937671 37937718 -81807180 + LTR14B LTR ERVK 1 46 -562 * 1916 122 98 16 chr13 37937706 37938074 -81806824 + LTR14B LTR ERVK 211 608 0 266 335 111 47 chr13 37938111 37938663 -81806235 - L2 LINE L2 -1120 2194 1608 434 271 125 49 chr13 37940201 37941164 -81803734 - L1M4 LINE L1 -2845 3301 2266 186 43 0 0 chr13 37941186 37941209 -81803689 + (TC)n Simple_repeat Simple_repeat 2 24 0 2569 78 24 16 chr13 37941225 37941597 -81803301 - THE1C LTR MaLR 0 375 1 540 281 22 0 chr13 37942165 37942300 -81802598 + MIR3 SINE MIR 70 207 -1 1481 197 3 36 chr13 37942520 37942825 -81802073 - AluJo SINE Alu -13 299 5 1678 235 28 40 chr13 37943498 37944069 -81800829 - L1MC4a LINE L1 -88 7720 7157 273 297 14 22 chr13 37944171 37944309 -81800589 - L1MEd LINE L1 -5914 205 69 246 32 0 0 chr13 37944684 37944715 -81800183 + (ATG)n Simple_repeat Simple_repeat 2 32 0 231 36 0 0 chr13 37945139 37945167 -81799731 + (TG)n Simple_repeat Simple_repeat 1 28 0 406 252 252 0 chr13 37946211 37946417 -81798481 + L1ME3A LINE L1 5516 5773 -397 518 257 7 0 chr13 37946429 37946569 -81798329 + L1ME3A LINE L1 6030 6170 0 327 320 112 37 chr13 37946915 37947184 -81797714 + L2 LINE L2 2241 2529 -785 501 257 118 69 chr13 37947265 37947702 -81797196 + L2 LINE L2 2352 3078 -194 240 261 29 14 chr13 37947699 37947768 -81797130 + L2 LINE L2 3225 3294 -19 * 234 349 159 0 chr13 37947870 37947996 -81796902 + L2 LINE L2 3122 3267 -5 631 169 45 9 chr13 37948048 37948193 -81796705 + MLT1A2 LTR MaLR 1 122 -252 2659 48 0 0 chr13 37948543 37948854 -81796044 - AluY SINE Alu 0 311 1 1048 117 160 34 chr13 37950043 37950249 -81794649 - LTR18B LTR ERVL 0 614 383 1209 122 15 10 chr13 37950292 37950489 -81794409 - LTR18B LTR ERVL -416 198 1 322 267 89 0 chr13 37952599 37952700 -81792198 - MIR SINE MIR -53 209 100 300 338 91 48 chr13 37952797 37953194 -81791704 - L2 LINE L2 -3 3269 2856 331 307 68 45 chr13 37953402 37953578 -81791320 + L1MC/D LINE L1 5596 5775 -2033 722 241 51 22 chr13 37954391 37954625 -81790273 + L1MC/D LINE L1 5324 5563 -605 1065 158 5 48 chr13 37954625 37954834 -81790064 - MLT2D LTR ERVL 0 414 215 781 259 54 11 chr13 37956212 37956510 -81788388 + MLT1I LTR MaLR 63 402 -7 325 296 8 16 chr13 37956829 37956954 -81787944 - MLT1H LTR MaLR -387 162 39 249 218 77 96 chr13 37957052 37957094 -81787804 + L2 LINE L2 22 63 -3251 562 231 16 55 chr13 37957094 37957276 -81787622 - MER69A DNA AcHobo -2 175 1 249 218 77 96 chr13 37957276 37957389 -81787509 + L2 LINE L2 63 174 -3140 883 291 50 18 chr13 37957410 37957692 -81787206 + L2 LINE L2 3019 3309 -4 307 213 33 0 chr13 37957791 37957852 -81787046 - MIR3 SINE MIR -22 186 124 228 216 0 14 chr13 37957853 37957927 -81786971 - Charlie2 DNA MER1_type -116 2746 2674 23300 159 29 22 chr13 37957930 37958071 -81786827 - L1PA10 LINE L1 -4 6479 6340 189 0 0 0 chr13 37958071 37958092 -81786806 + (TCCCC)n Simple_repeat Simple_repeat 1 21 0 23300 159 29 22 chr13 37958092 37963105 -81781793 - L1PA10 LINE L1 -143 6340 1277 180 77 0 0 chr13 37963105 37963131 -81781767 + (TTG)n Simple_repeat Simple_repeat 2 27 0 23300 159 29 22 chr13 37963131 37964401 -81780497 - L1PA10 LINE L1 -5206 1277 17 2155 97 0 42 chr13 37964411 37964720 -81780178 - AluSq SINE Alu -17 296 1 615 235 142 9 chr13 37964720 37965065 -81779833 - Charlie2 DNA MER1_type -171 2691 2301 1072 195 9 26 chr13 37965069 37965300 -81779598 + MER46A DNA MER2_type 1 227 -9 1025 207 40 92 chr13 37965324 37965750 -81779148 - Charlie2 DNA MER1_type -574 2288 1885 590 215 42 14 chr13 37965875 37966019 -81778879 + MER45A DNA AcHobo 31 178 0 * 623 254 85 27 chr13 37966019 37966241 -81778657 - Charlie2 DNA MER1_type -2626 236 2 2658 79 27 3 chr13 37966505 37966871 -81778027 + L1PA11 LINE L1 5798 6172 -2 195 296 0 19 chr13 37967534 37967588 -81777310 + MIR SINE MIR 23 75 -133 449 152 0 11 chr13 37967827 37967919 -81776979 - L1MDa LINE L1 -4115 2425 2335 181 325 0 0 chr13 37970197 37970237 -81774661 + L2 LINE L2 3210 3249 -23 222 333 80 0 chr13 37972229 37972304 -81772594 - L2 LINE L2 -20 3252 3172 300 264 137 61 chr13 37973001 37973198 -81771700 - HAL1 LINE L1 -2295 212 1 399 41 0 0 chr13 37973735 37973784 -81771114 + (CA)n Simple_repeat Simple_repeat 1 49 0 2043 216 50 17 chr13 37974222 37974740 -81770158 - MLT1F1 LTR MaLR -32 535 1 333 390 26 16 chr13 37974772 37974962 -81769936 + L2 LINE L2 2843 3034 -238 183 316 0 18 chr13 37975105 37975162 -81769736 + L2 LINE L2 3193 3248 -24 188 313 157 20 chr13 37975310 37975559 -81769339 - L2 LINE L2 -814 2500 2218 1961 140 20 7 chr13 37977387 37977680 -81767218 - AluSx SINE Alu -15 297 1 945 182 28 0 chr13 37977746 37977927 -81766971 + MLT1B LTR MaLR 1 186 -204 630 205 8 126 chr13 37977923 37978162 -81766736 - LTR24B LTR ERV1 -178 398 188 * 281 148 168 30 chr13 37978257 37978358 -81766540 - LTR23-int LTR ERV1 0 5123 5009 253 319 12 25 chr13 37978729 37978751 -81766147 - MER70-int LTR ERVL -328 4695 4674 338 296 8 15 chr13 37978751 37978883 -81766015 - MER110-int LTR ERV1 -467 6209 6079 2367 78 0 37 chr13 37979361 37979682 -81765216 + AluY SINE Alu 1 309 -2 382 294 74 40 chr13 37980650 37980976 -81763922 - MER110-int LTR ERV1 -2169 2478 2142 539 217 53 59 chr13 37982275 37982597 -81762301 + L1PA16 LINE L1 5812 6131 -35 1245 179 45 38 chr13 37982597 37982887 -81762011 - THE1B LTR MaLR -72 292 1 244 251 239 25 chr13 37982887 37983050 -81761848 + L1ME3A LINE L1 5913 6110 -60 186 319 134 64 chr13 37983543 37983700 -81761198 + MIR SINE MIR 1 168 -94 308 214 9 0 chr13 37983714 37983826 -81761072 + (TA)n Simple_repeat Simple_repeat 1 113 0 1242 221 52 11 chr13 37983845 37984116 -81760782 - AluJo SINE Alu -30 282 1 264 167 0 0 chr13 37984118 37984166 -81760732 + T-rich Low_complexity Low_complexity 1 48 0 6061 126 13 49 chr13 37984183 37985333 -81759565 + L1P LINE L1 3529 4637 -1509 1006 254 48 48 chr13 37985660 37985995 -81758903 + LTR16A LTR ERVL 105 439 -11 1913 117 88 0 chr13 37986264 37986538 -81758360 + AluSc SINE Alu 1 298 -11 1050 182 0 6 chr13 37987451 37987621 -81757277 - AluJb SINE Alu -19 293 125 33 0 0 0 chr13 37987621 37987654 -81757244 + AT_rich Low_complexity Low_complexity 1 33 0 305 309 71 24 chr13 37988287 37988413 -81756485 + MIR3 SINE MIR 66 197 -11 414 0 0 0 chr13 37988440 37988486 -81756412 + (TTA)n Simple_repeat Simple_repeat 3 48 0 39381 35 23 8 chr13 37988486 37994350 -81750548 - L1PA7 LINE L1 -18 6136 187 407 326 181 5 chr13 37995714 37995935 -81748963 + MIR SINE MIR 3 262 0 256 200 36 0 chr13 37997024 37997079 -81747819 + GA-rich Low_complexity Low_complexity 2 58 0 936 136 0 22 chr13 37997079 37997263 -81747635 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2238 124 7 0 chr13 37997819 37998126 -81746772 + AluSp SINE Alu 1 309 -4 269 296 148 9 chr13 37998495 37998610 -81746288 + MIR3 SINE MIR 27 157 -51 3779 125 15 61 chr13 37998832 37999767 -81745131 - L1MA5 LINE L1 -4 6296 5211 1404 76 10 0 chr13 37999771 37999968 -81744930 + L1MA1 LINE L1 6097 6295 -7 312 237 179 47 chr13 37999978 38000168 -81744730 - L1M4 LINE L1 -1623 4523 4309 439 161 35 0 chr13 38000170 38000257 -81744641 - L1M2a LINE L1 -7075 93 4 325 244 26 0 chr13 38000348 38000426 -81744472 - L3 LINE CR1 -149 1428 1349 325 297 33 6 chr13 38000504 38000686 -81744212 + L1ME LINE L1 5325 5511 -653 2042 254 29 28 chr13 38000831 38001546 -81743352 + L1ME3 LINE L1 5445 6160 -2 1096 306 30 21 chr13 38001783 38002211 -81742687 - LTR16A LTR ERVL -3 447 16 1054 339 63 18 chr13 38002681 38003394 -81741504 - ERVL LTR ERVL -951 4813 4069 2156 113 10 7 chr13 38003971 38004273 -81740625 - AluSq SINE Alu -10 303 1 421 233 11 0 chr13 38005339 38005429 -81739469 + L2 LINE L2 3182 3272 0 182 345 46 23 chr13 38005452 38005539 -81739359 + L2 LINE L2 2994 3082 -190 357 75 0 0 chr13 38005606 38005659 -81739239 + (TC)n Simple_repeat Simple_repeat 2 54 0 218 338 144 30 chr13 38006800 38007134 -81737764 + L2 LINE L2 2368 2739 -575 254 146 0 135 chr13 38008140 38008229 -81736669 + AluSq/x SINE Alu 59 135 -168 4859 55 8 0 chr13 38008860 38009496 -81735402 - L1PA7 LINE L1 -94 6060 5420 4733 115 8 0 chr13 38009492 38010239 -81734659 + L1P LINE L1 2454 3206 -2940 * 472 250 83 22 chr13 38010249 38010477 -81734421 - L1MC4a LINE L1 -1885 5923 5682 3840 100 42 8 chr13 38010978 38011618 -81733280 + L1P LINE L1 3079 3740 -2406 21 0 0 0 chr13 38011974 38011995 -81732903 + AT_rich Low_complexity Low_complexity 1 21 0 213 333 0 0 chr13 38012429 38012519 -81732379 + GA-rich Low_complexity Low_complexity 1 90 0 1070 200 37 62 chr13 38013244 38013599 -81731299 - LTR24-int LTR ERV1 -4473 650 305 490 272 21 21 chr13 38013724 38013915 -81730983 - LTR24 LTR ERV1 0 467 277 755 262 63 30 chr13 38014040 38014277 -81730621 - MIR SINE MIR -1 261 17 201 277 0 0 chr13 38014541 38014588 -81730310 + MIR SINE MIR 102 148 -114 2014 158 12 92 chr13 38014591 38015102 -81729796 + L1PB4 LINE L1 5684 6153 -3 193 158 0 26 chr13 38015103 38015141 -81729757 + MIR3 SINE MIR 137 173 -35 186 243 27 0 chr13 38015797 38015834 -81729064 - L2 LINE L2 -17 3255 3218 378 221 115 0 chr13 38015852 38015965 -81728933 - MIR SINE MIR 0 262 137 241 286 13 39 chr13 38016390 38016467 -81728431 - MER5A DNA MER1_type 0 189 115 * 258 200 29 57 chr13 38016413 38016483 -81728415 + MER5A DNA MER1_type 35 102 -87 2228 84 0 0 chr13 38017251 38017525 -81727373 - AluSc SINE Alu -15 294 21 195 254 55 0 chr13 38017608 38017663 -81727235 - L2 LINE L2 -42 3230 3173 2374 75 0 3 chr13 38017954 38018247 -81726651 - AluSq SINE Alu -9 304 13 185 333 0 0 chr13 38018250 38018301 -81726597 - MIR SINE MIR -136 126 76 523 218 132 29 chr13 38019289 38019463 -81725435 + ERVL LTR ERVL 2781 2972 -2792 793 240 204 34 chr13 38019482 38019865 -81725033 + MLT1D LTR MaLR 55 502 -3 302 183 169 0 chr13 38019897 38019968 -81724930 + LTR67 LTR ERVL 97 179 -378 335 219 68 68 chr13 38020098 38020244 -81724654 + LTR67 LTR ERVL 412 557 0 354 212 96 106 chr13 38021642 38021840 -81723058 + MLT1A1 LTR MaLR 1 196 -430 * 899 212 31 62 chr13 38021741 38022033 -81722865 + MLT2C1 LTR ERVL 115 397 0 3193 77 37 2 chr13 38022363 38022751 -81722147 + MLT2A1 LTR ERVL 1 407 -37 225 0 0 0 chr13 38022751 38022776 -81722122 + (TA)n Simple_repeat Simple_repeat 2 26 0 3193 77 37 2 chr13 38022776 38022816 -81722082 + MLT2A1 LTR ERVL 407 444 0 305 75 0 0 chr13 38024521 38024561 -81720337 - MLT2D LTR ERVL 0 520 481 333 0 0 0 chr13 38024561 38024598 -81720300 + (TG)n Simple_repeat Simple_repeat 1 37 0 2105 130 0 20 chr13 38025068 38025423 -81719475 - L1MA8 LINE L1 -430 5861 5514 324 0 0 0 chr13 38025527 38025563 -81719335 + (CA)n Simple_repeat Simple_repeat 2 37 0 273 387 21 14 chr13 38025569 38025711 -81719187 - MIR SINE MIR -73 189 47 22 0 0 0 chr13 38025996 38026018 -81718880 + AT_rich Low_complexity Low_complexity 1 22 0 1930 186 32 67 chr13 38026292 38026461 -81718437 - MLT1D LTR MaLR 0 505 332 2029 161 148 30 chr13 38026461 38026926 -81717972 - MLT2B1 LTR ERVL 0 520 1 1930 186 32 67 chr13 38026926 38027279 -81717619 - MLT1D LTR MaLR -173 332 1 306 314 157 10 chr13 38027349 38027553 -81717345 + MIR SINE MIR 3 236 -26 417 324 78 64 chr13 38028940 38029236 -81715662 + L1ME LINE L1 5316 5615 -506 2563 64 0 3 chr13 38029553 38029864 -81715034 + AluSx SINE Alu 1 310 -2 791 197 0 0 chr13 38030214 38030361 -81714537 + MLT1A1 LTR MaLR 171 317 -48 1624 205 27 19 chr13 38030531 38030897 -81714001 - MLT2D LTR ERVL -40 374 6 199 339 18 37 chr13 38031029 38031138 -81713760 + MIR3 SINE MIR 55 161 -47 2229 135 13 70 chr13 38031273 38031475 -81713423 + Tigger2 DNA MER2_type 6 218 -2500 1466 165 5 0 chr13 38031475 38031699 -81713199 + AluJb SINE Alu 1 225 -87 2229 135 13 70 chr13 38031699 38031964 -81712934 + Tigger2 DNA MER2_type 218 446 -2272 703 210 64 13 chr13 38031967 38032124 -81712774 + AluJb SINE Alu 147 311 -1 1131 129 95 0 chr13 38032125 38032335 -81712563 + Tigger2 DNA MER2_type 530 759 -1959 439 184 39 0 chr13 38032388 38032491 -81712407 + Tigger2 DNA MER2_type 2461 2567 -151 561 28 28 0 chr13 38032491 38032563 -81712335 - AluY SINE Alu -14 296 223 777 172 40 0 chr13 38032563 38032714 -81712184 + Tigger2 DNA MER2_type 2552 2708 -10 23 33 0 0 chr13 38033106 38033136 -81711762 + AT_rich Low_complexity Low_complexity 1 30 0 303 219 14 14 chr13 38033144 38033217 -81711681 - HAL1b LINE L1 -105 1243 1171 477 263 73 167 chr13 38033222 38033467 -81711431 - L2 LINE L2 -20 3293 3027 1763 53 0 18 chr13 38033467 38033694 -81711204 - L1PA8 LINE L1 0 6172 5950 419 70 0 0 chr13 38033694 38033751 -81711147 + L1P3 LINE L1 5681 5737 -435 477 263 73 167 chr13 38033751 38033886 -81711012 - L2 LINE L2 -284 3029 2897 535 295 26 11 chr13 38034985 38035175 -81709723 - HERV16 LTR ERVL -4330 666 474 425 244 79 40 chr13 38035328 38035703 -81709195 + MLT1G1 LTR MaLR 78 589 -6 301 315 31 12 chr13 38035724 38035886 -81709012 - HERV16 LTR ERVL -4680 316 152 375 318 124 32 chr13 38036638 38037016 -81707882 - LTR16A LTR ERVL -29 428 16 225 288 0 0 chr13 38038425 38038484 -81706414 - L2 LINE L2 -547 2767 2709 3957 142 47 20 chr13 38038680 38039433 -81705465 - L1MA5 LINE L1 -5 6295 5523 329 256 16 48 chr13 38040250 38040375 -81704523 - LTR16C LTR ERVL -2 489 369 619 272 138 34 chr13 38040378 38040698 -81704200 - LTR16C LTR ERVL -52 439 87 2012 109 10 10 chr13 38040844 38041165 -81703733 - AluSq SINE Alu 0 313 1 1261 242 97 21 chr13 38042546 38042984 -81701914 - MLT1C LTR MaLR 0 467 1 250 75 0 57 chr13 38043190 38043243 -81701655 - L1MC5 LINE L1 -44 7917 7868 1063 226 72 104 chr13 38043331 38043874 -81701024 - L1MC5 LINE L1 -283 7678 7176 2248 114 0 0 chr13 38043874 38044180 -81700718 - AluY SINE Alu -1 310 5 1063 226 72 104 chr13 38044180 38044575 -81700323 - L1MC5 LINE L1 -785 7176 6770 234 241 92 82 chr13 38044691 38045006 -81699892 + L1M4 LINE L1 4500 4817 -1329 350 229 7 64 chr13 38045522 38045662 -81699236 + L1ME1 LINE L1 5977 6108 -58 * 410 192 96 90 chr13 38045567 38045723 -81699175 + L1MA10 LINE L1 6175 6331 -3 331 309 64 0 chr13 38045835 38045945 -81698953 + MIR SINE MIR 76 192 -70 569 184 0 0 chr13 38046725 38046828 -81698070 - MER58 DNA MER1_type 0 2420 2318 287 243 19 93 chr13 38046840 38046947 -81697951 - MER58 DNA MER1_type -242 99 1 225 0 0 0 chr13 38047597 38047622 -81697276 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 616 301 52 32 chr13 38047705 38048320 -81696578 - L1M4 LINE L1 -1131 5015 4389 318 289 33 43 chr13 38048526 38048737 -81696161 - L1M4 LINE L1 -1988 4158 3950 6739 67 53 0 chr13 38048758 38049135 -81695763 - L1PA7 LINE L1 0 6154 5798 2420 69 6 28 chr13 38049135 38049452 -81695446 - AluY SINE Alu -1 310 1 6739 67 53 0 chr13 38049452 38050095 -81694803 - L1PA7 LINE L1 -356 5798 5124 378 0 0 0 chr13 38050611 38050653 -81694245 + (CA)n Simple_repeat Simple_repeat 2 43 0 1746 145 27 10 chr13 38050997 38051293 -81693605 - AluSx SINE Alu -11 301 1 522 285 105 19 chr13 38051573 38051945 -81692953 - L1M4 LINE L1 -2393 3753 3350 282 259 12 0 chr13 38052252 38052333 -81692565 + MLT1I LTR MaLR 326 407 -2 1948 132 0 43 chr13 38052471 38052797 -81692101 - AluSx SINE Alu 0 312 1 311 282 26 51 chr13 38052832 38053027 -81691871 - L1M4 LINE L1 -2993 3153 2964 1593 161 98 0 chr13 38053066 38053340 -81691558 + AluJo SINE Alu 9 309 -3 354 255 138 7 chr13 38053682 38053827 -81691071 - L1M4 LINE L1 -3647 2499 2336 261 248 103 8 chr13 38053984 38054101 -81690797 - L1MC5 LINE L1 -52 7909 7782 21 57 0 0 chr13 38054229 38054264 -81690634 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 38054361 38054382 -81690516 + AT_rich Low_complexity Low_complexity 1 21 0 379 319 125 83 chr13 38054453 38054600 -81690298 - L2 LINE L2 -422 2892 2753 2172 117 3 3 chr13 38054600 38054900 -81689998 + AluSq SINE Alu 1 300 -13 379 319 125 83 chr13 38054900 38056219 -81688679 - L2 LINE L2 -561 2753 1365 288 328 108 53 chr13 38057213 38057554 -81687344 - L2 LINE L2 -8 3305 2946 204 185 31 15 chr13 38059077 38059142 -81685756 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1022 249 39 0 chr13 38059145 38059402 -81685496 + Tigger3(Golem) DNA MER2_type 17 283 -2746 5703 92 62 1 chr13 38059585 38061004 -81683894 + L1PA11 LINE L1 4697 6174 0 700 174 17 0 chr13 38061008 38061123 -81683775 - FLAM_C SINE Alu -16 117 1 196 262 0 0 chr13 38061527 38061569 -81683329 + MIR3 SINE MIR 162 203 -5 18356 111 9 13 chr13 38062157 38065165 -81679733 - L1P3 LINE L1 -2304 4157 1162 679 98 0 0 chr13 38065163 38065255 -81679643 - L1P3 LINE L1 -6365 96 5 * 381 237 46 15 chr13 38066064 38066195 -81678703 - MER103 DNA DNA -30 136 2 258 229 0 0 chr13 38066909 38066979 -81677919 - L1ME2 LINE L1 -13 6151 6082 201 176 0 0 chr13 38067418 38067452 -81677446 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 26 30 0 0 chr13 38067626 38067659 -81677239 + AT_rich Low_complexity Low_complexity 1 33 0 193 289 48 48 chr13 38069454 38069558 -81675340 + MIR SINE MIR 112 215 -47 7245 161 112 113 chr13 38069838 38071445 -81673453 + L1MC3 LINE L1 5433 7041 -744 847 156 0 15 chr13 38071445 38071580 -81673318 + AluJ SINE Alu 1 133 -169 7245 161 112 113 chr13 38071580 38071614 -81673284 + L1MC3 LINE L1 7041 7074 -711 1114 165 28 0 chr13 38071614 38071796 -81673102 + AluJ SINE Alu 122 308 -4 7245 161 112 113 chr13 38071796 38072319 -81672579 + L1MC3 LINE L1 7074 7776 -9 31 26 0 0 chr13 38072795 38072833 -81672065 + AT_rich Low_complexity Low_complexity 1 38 0 322 272 228 0 chr13 38073386 38073500 -81671398 + MIR3 SINE MIR 31 170 -38 21 36 0 0 chr13 38073652 38073680 -81671218 + AT_rich Low_complexity Low_complexity 1 28 0 1654 258 51 42 chr13 38074467 38075337 -81669561 - L1M4 LINE L1 -833 5313 4437 645 301 84 3 chr13 38075623 38075969 -81668929 - LTR68 LTR ERV1 -366 374 1 238 313 81 30 chr13 38075980 38076079 -81668819 + L2 LINE L2 3204 3307 -6 1522 219 106 47 chr13 38076079 38076591 -81668307 - MLT1F LTR MaLR 0 542 1 261 211 19 19 chr13 38077879 38077931 -81666967 - L2 LINE L2 -16 3256 3205 1139 281 46 13 chr13 38079419 38079811 -81665087 - LTR16A LTR ERVL -39 411 7 1567 184 3 9 chr13 38081104 38081420 -81663478 - L1ME2 LINE L1 -376 5936 5623 327 237 86 59 chr13 38081460 38081612 -81663286 + L1MA9 LINE L1 6119 6274 -38 23 0 0 0 chr13 38081612 38081635 -81663263 + AT_rich Low_complexity Low_complexity 1 23 0 349 200 13 13 chr13 38081666 38081741 -81663157 + MER21B LTR ERV1 16 90 -773 27 49 0 0 chr13 38081889 38081930 -81662968 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 38081986 38082008 -81662890 + AT_rich Low_complexity Low_complexity 1 22 0 845 252 160 69 chr13 38085106 38085242 -81659656 - MLT1E LTR MaLR -68 525 403 2339 70 10 3 chr13 38085242 38085542 -81659356 - AluY SINE Alu -9 302 1 845 252 160 69 chr13 38085542 38085634 -81659264 - MLT1E LTR MaLR -190 403 321 3505 152 0 4 chr13 38085634 38086162 -81658736 - MER1A DNA MER1_type 0 527 2 845 252 160 69 chr13 38086162 38086413 -81658485 - MLT1E LTR MaLR -272 321 1 260 298 51 47 chr13 38086523 38087167 -81657731 - L1M4 LINE L1 -2169 3977 3331 1626 191 40 35 chr13 38087404 38087776 -81657122 - MLT1A2 LTR MaLR 0 374 1 2029 214 30 13 chr13 38087799 38088258 -81656640 + MLT1C LTR MaLR 1 467 0 399 256 192 0 chr13 38089408 38089564 -81655334 + L2 LINE L2 2852 3037 -276 1996 206 84 4 chr13 38089598 38090083 -81654815 - MER74A LTR ERVL -30 528 5 4723 119 29 6 chr13 38090254 38090977 -81653921 + L1PA16 LINE L1 5418 6157 -9 791 197 0 0 chr13 38091567 38091714 -81653184 - MLT1A1 LTR MaLR -48 317 171 2617 42 0 3 chr13 38092064 38092374 -81652524 - AluYa5 SINE Alu -2 309 1 11831 81 7 0 chr13 38092375 38094479 -81650419 - L1P3 LINE L1 -393 5779 3668 298 119 0 0 chr13 38094476 38094518 -81650380 + L1P3 LINE L1 29 70 -6391 * 1040 211 87 16 chr13 38094687 38095010 -81649888 - LTR48B LTR ERV1 0 644 299 605 163 0 47 chr13 38095110 38095239 -81649659 - FAM SINE Alu -62 123 1 288 296 96 32 chr13 38095455 38095580 -81649318 - MER5B DNA MER1_type -4 174 42 392 304 61 16 chr13 38095672 38095838 -81649060 + MIR SINE MIR 10 183 -70 477 203 12 28 chr13 38096416 38096669 -81648229 + GA-rich Low_complexity Low_complexity 1 248 0 21 57 0 0 chr13 38096918 38096953 -81647945 + AT_rich Low_complexity Low_complexity 1 35 0 1145 282 30 30 chr13 38097092 38097544 -81647354 + LTR40a LTR ERVL 5 448 -14 1214 241 21 12 chr13 38097569 38097901 -81646997 + HERVL40 LTR ERVL 17 351 -5179 1517 220 80 23 chr13 38098081 38098518 -81646380 + LTR40b LTR ERVL 1 462 0 369 232 99 110 chr13 38098518 38098853 -81646045 - LTR16A1 LTR ERVL -71 386 54 560 282 153 21 chr13 38100879 38101305 -81643593 - L1ME3A LINE L1 -219 5951 5470 1910 280 55 29 chr13 38101379 38101618 -81643280 - L1ME3A LINE L1 -26 6144 5913 216 0 0 0 chr13 38101618 38101642 -81643256 + (TG)n Simple_repeat Simple_repeat 2 25 0 1910 280 55 29 chr13 38101642 38102270 -81642628 - L1ME3A LINE L1 -257 5913 5254 2009 287 90 27 chr13 38102271 38103443 -81641455 - L1ME3A LINE L1 -2366 3780 2484 2193 142 63 36 chr13 38103443 38103858 -81641040 + MSTB LTR MaLR 1 426 0 2009 287 90 27 chr13 38103858 38104248 -81640650 - L1ME3A LINE L1 -3662 2484 2120 741 304 219 43 chr13 38104420 38105205 -81639693 + L3 LINE CR1 48 970 -607 291 212 0 30 chr13 38105971 38106070 -81638828 - HAL1 LINE L1 -1042 1465 1370 1485 260 124 27 chr13 38106086 38106211 -81638687 - HAL1 LINE L1 -124 2383 2272 2317 166 23 14 chr13 38106211 38106639 -81638259 + MSTB1 LTR MaLR 1 432 0 1485 260 124 27 chr13 38106639 38107337 -81637561 - HAL1 LINE L1 -235 2272 1480 894 265 68 68 chr13 38107379 38107986 -81636912 - HAL1 LINE L1 -1730 777 168 1595 223 7 0 chr13 38107986 38108273 -81636625 - AluJo SINE Alu -23 289 1 894 265 68 68 chr13 38108273 38108431 -81636467 - HAL1 LINE L1 -2338 169 12 333 221 12 0 chr13 38108443 38108529 -81636369 + MER103 DNA DNA 55 141 -25 414 232 14 49 chr13 38108552 38108694 -81636204 - MLT1I LTR MaLR -34 375 239 455 316 126 5 chr13 38109097 38109303 -81635595 + MIR SINE MIR 28 258 -4 1756 147 48 0 chr13 38109303 38109576 -81635322 + AluSq SINE Alu 1 286 -27 423 0 0 0 chr13 38109579 38109626 -81635272 + (TA)n Simple_repeat Simple_repeat 1 47 0 264 30 0 0 chr13 38109625 38109658 -81635240 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 186 191 0 0 chr13 38109662 38109704 -81635194 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2325 98 0 0 chr13 38110003 38110299 -81634599 + AluY SINE Alu 2 297 -14 1748 186 0 11 chr13 38110392 38110763 -81634135 + L1PA14 LINE L1 2290 2656 -3490 * 9328 187 10 12 chr13 38110759 38112734 -81632164 + L1PA14 LINE L1 3266 5236 -910 1964 105 28 50 chr13 38112740 38113103 -81631795 - THE1C LTR MaLR -20 355 1 5312 143 11 2 chr13 38113118 38114016 -81630882 + L1PA14 LINE L1 5254 6159 -2 3485 120 2 22 chr13 38114381 38114923 -81629975 + LTR26B LTR ERV1 1 531 0 3632 118 13 0 chr13 38115926 38116466 -81628432 + L1PA15 LINE L1 5610 6156 -9 21 0 0 0 chr13 38116476 38116497 -81628401 + AT_rich Low_complexity Low_complexity 1 21 0 567 189 139 137 chr13 38118419 38118923 -81625975 - MLT1D LTR MaLR 0 505 1 1675 181 28 19 chr13 38119085 38119449 -81625449 + THE1C LTR MaLR 1 367 -8 9288 115 45 17 chr13 38119449 38120984 -81623914 + THE1C-int LTR MaLR 3 1580 0 1663 164 66 23 chr13 38120999 38121346 -81623552 + THE1C LTR MaLR 14 375 0 1901 181 17 39 chr13 38121868 38122283 -81622615 - MLT2D LTR ERVL -8 406 1 964 299 129 55 chr13 38122850 38123006 -81621892 + L1MC4a LINE L1 4023 4166 -1980 1380 146 33 11 chr13 38123006 38123281 -81621617 - L1MA8 LINE L1 0 6291 6011 964 299 129 55 chr13 38123281 38123490 -81621408 + L1MC4a LINE L1 4166 4358 -1788 195 42 0 0 chr13 38123490 38123514 -81621384 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 964 299 129 55 chr13 38123514 38124146 -81620752 + L1MC4a LINE L1 4358 5095 -1051 336 273 86 8 chr13 38124175 38124303 -81620595 + L1MC4a LINE L1 5195 5332 -814 2020 125 0 40 chr13 38124307 38124628 -81620270 + AluSx SINE Alu 1 308 -4 766 294 109 27 chr13 38124658 38125144 -81619754 + L1MC4a LINE L1 5412 5937 -1871 879 250 23 5 chr13 38126437 38126657 -81618241 + MER58A DNA MER1_type 1 224 0 498 303 60 11 chr13 38126752 38126937 -81617961 + MIR SINE MIR 19 212 -50 456 186 41 0 chr13 38127021 38127118 -81617780 - MLT1H1 LTR MaLR -49 506 406 749 206 7 0 chr13 38127196 38127332 -81617566 + FLAM_C SINE Alu 1 137 -6 927 255 99 14 chr13 38127332 38127614 -81617284 - MLT1H1 LTR MaLR -247 308 3 808 125 18 60 chr13 38127633 38127801 -81617097 + L1M3f LINE L1 1 161 -5167 2037 135 10 0 chr13 38127888 38128185 -81616713 + AluSx SINE Alu 7 306 -6 4700 57 0 7 chr13 38129454 38130049 -81614849 + L1PA7 LINE L1 5558 6148 -6 32 43 0 0 chr13 38130082 38130128 -81614770 + AT_rich Low_complexity Low_complexity 1 46 0 253 278 67 11 chr13 38130332 38130422 -81614476 - MIR SINE MIR -50 212 118 405 254 159 32 chr13 38130950 38131139 -81613759 + L2 LINE L2 2943 3155 -117 266 172 153 24 chr13 38131913 38131996 -81612902 - MER5A DNA MER1_type -8 181 78 229 235 0 49 chr13 38134088 38134169 -81610729 - MER103 DNA DNA -73 93 17 1351 224 53 18 chr13 38134205 38134545 -81610353 - MLT1A1 LTR MaLR -11 354 3 395 326 125 42 chr13 38135712 38136065 -81608833 + MER115 DNA AcHobo 59 440 -253 522 287 60 12 chr13 38136215 38136382 -81608516 - MIR SINE MIR -21 241 67 2211 117 0 0 chr13 38137803 38138101 -81606797 + AluSx SINE Alu 1 298 -14 491 323 68 36 chr13 38138607 38138858 -81606040 + MIR SINE MIR 4 262 0 4629 161 52 13 chr13 38139022 38139513 -81605385 - L1MA8 LINE L1 -4 6287 5817 617 40 0 56 chr13 38139513 38139638 -81605260 + (TA)n Simple_repeat Simple_repeat 2 119 0 4629 161 52 13 chr13 38139638 38140342 -81604556 - L1MA8 LINE L1 -474 5817 5045 339 262 31 10 chr13 38140510 38140637 -81604261 + MER21B LTR ERV1 24 196 -409 * 1040 274 42 83 chr13 38140636 38141250 -81603648 + MER21B LTR ERV1 126 714 -149 25 0 0 0 chr13 38142279 38142304 -81602594 + AT_rich Low_complexity Low_complexity 1 25 0 2354 95 0 0 chr13 38142320 38142616 -81602282 + AluSg SINE Alu 1 296 -14 2201 280 35 54 chr13 38142862 38143844 -81601054 + L1M4b LINE L1 18 1217 -5642 1281 237 19 57 chr13 38144310 38144720 -81600178 + L1M4b LINE L1 1211 1590 -5265 2448 201 50 4 chr13 38144720 38145217 -81599681 + MLT2B1 LTR ERVL 1 520 0 1281 237 19 57 chr13 38145217 38145487 -81599411 + L1M4b LINE L1 1590 1869 -4986 312 27 0 0 chr13 38146106 38146143 -81598755 + (TG)n Simple_repeat Simple_repeat 2 38 0 309 329 62 50 chr13 38146208 38146369 -81598529 + L2 LINE L2 3017 3179 -93 393 247 14 7 chr13 38146433 38146579 -81598319 + GA-rich Low_complexity Low_complexity 2 148 0 381 291 0 0 chr13 38148244 38148409 -81596489 + (CA)n Simple_repeat Simple_repeat 1 165 0 495 268 0 0 chr13 38148430 38148740 -81596158 + (CA)n Simple_repeat Simple_repeat 1 310 0 204 322 44 11 chr13 38149716 38149806 -81595092 + MER5A DNA MER1_type 63 155 -34 322 363 105 36 chr13 38150472 38151041 -81593857 - L2 LINE L2 0 3272 2615 385 217 20 13 chr13 38151130 38151282 -81593616 + (TA)n Simple_repeat Simple_repeat 1 153 0 587 300 137 26 chr13 38152041 38152421 -81592477 - L2 LINE L2 -784 2530 2109 4496 135 30 1 chr13 38152863 38153560 -81591338 - LTR62 LTR ERVK -2 717 1 758 252 85 30 chr13 38153877 38154242 -81590656 - L1MC4a LINE L1 -1759 6049 5665 15765 82 5 0 chr13 38154728 38157225 -81587673 + L1P3 LINE L1 3079 5589 -565 322 314 77 48 chr13 38157396 38157603 -81587295 + L2 LINE L2 1860 2072 -1242 6775 118 20 63 chr13 38157727 38157942 -81586956 + Tigger3b DNA MER2_type 3 226 -2802 1172 139 28 5 chr13 38157942 38158158 -81586740 + L1MA5 LINE L1 6078 6298 -2 6775 118 20 63 chr13 38158158 38158936 -81585962 + Tigger3b DNA MER2_type 226 932 -2096 2253 75 0 0 chr13 38158936 38159277 -81585621 - AluSc SINE Alu 0 341 1 6775 118 20 63 chr13 38159277 38159564 -81585334 + Tigger3b DNA MER2_type 932 1230 -1 234 371 0 0 chr13 38159576 38159665 -81585233 + L2 LINE L2 2260 2348 -966 419 95 54 0 chr13 38159798 38159872 -81585026 - L1MA7 LINE L1 -5 6286 6209 1229 227 175 19 chr13 38160412 38161283 -81583615 - L1ME3 LINE L1 -3 6159 5155 197 400 110 0 chr13 38161413 38161513 -81583385 + L2 LINE L2 3141 3251 -21 180 0 0 0 chr13 38161812 38161832 -81583066 + (A)n Simple_repeat Simple_repeat 1 20 0 1591 161 48 45 chr13 38162612 38162922 -81581976 - AluSx SINE Alu -1 311 1 423 0 0 0 chr13 38164254 38164301 -81580597 + (TG)n Simple_repeat Simple_repeat 2 48 0 894 155 83 22 chr13 38166244 38166425 -81578473 + LTR47A LTR ERVL 261 452 0 196 189 75 0 chr13 38166711 38166764 -81578134 + L2 LINE L2 2433 2489 -825 375 276 40 60 chr13 38166776 38166975 -81577923 - MIR SINE MIR 0 262 68 210 289 208 10 chr13 38166971 38167168 -81577730 + L2 LINE L2 2505 2740 -574 * 934 80 0 24 chr13 38167168 38167293 -81577605 + AluSq/x SINE Alu 22 143 -169 840 114 0 0 chr13 38167396 38167510 -81577388 + AluSg/x SINE Alu 190 303 -7 415 333 113 0 chr13 38167529 38167715 -81577183 + L2 LINE L2 2771 2977 -337 209 261 0 0 chr13 38167725 38167771 -81577127 + L2 LINE L2 3263 3308 -5 477 309 46 68 chr13 38168599 38169056 -81575842 + LTR16A1 LTR ERVL 8 454 -3 24 0 0 0 chr13 38169596 38169620 -81575278 + AT_rich Low_complexity Low_complexity 1 24 0 200 256 0 0 chr13 38169835 38169874 -81575024 + polypyrimidine Low_complexity Low_complexity 3 41 0 433 298 88 77 chr13 38169879 38170255 -81574643 - L2 LINE L2 0 3313 2934 416 297 0 0 chr13 38170443 38170554 -81574344 - L2 LINE L2 -13 3300 3190 362 236 114 65 chr13 38171730 38171853 -81573045 - MIR SINE MIR -112 150 22 2935 131 7 2 chr13 38172001 38172428 -81572470 + MER57B LTR ERV1 1 429 -5 361 279 36 9 chr13 38173206 38173317 -81571581 - L1MC4 LINE L1 -1319 6723 6610 322 283 0 22 chr13 38173236 38173328 -81571570 + L1MC4 LINE L1 6614 6703 -1339 * 236 188 0 0 chr13 38173330 38173378 -81571520 - LTR66 LTR ERVL -169 441 394 2115 92 31 20 chr13 38173398 38173690 -81571208 - AluSx SINE Alu -14 298 4 2099 86 45 7 chr13 38173852 38174144 -81570754 + AluY SINE Alu 1 303 -8 6675 239 28 23 chr13 38174502 38177295 -81567603 + L1PA8 LINE L1 2190 4940 -2644 1651 186 0 7 chr13 38177295 38177623 -81567275 + AluJb SINE Alu 1 312 0 6675 239 28 23 chr13 38177623 38177707 -81567191 + L1PA8 LINE L1 4940 5022 -2562 6275 183 36 37 chr13 38177711 38179298 -81565600 + L1PA8 LINE L1 5383 6983 -627 1997 100 36 0 chr13 38179298 38179578 -81565320 + AluSg SINE Alu 1 290 -20 6275 183 36 37 chr13 38179578 38180206 -81564692 + L1PA8 LINE L1 6983 7610 0 2236 75 11 0 chr13 38180418 38180726 -81564172 - AluY SINE Alu 0 311 1 2404 90 0 6 chr13 38181712 38182023 -81562875 - AluSc SINE Alu 0 309 1 1033 233 94 0 chr13 38182179 38182467 -81562431 + L1MC4 LINE L1 7728 8042 0 2436 125 117 5 chr13 38182504 38182889 -81562009 + MSTA LTR MaLR 1 428 0 279 180 0 0 chr13 38183812 38183856 -81561042 - MER58A DNA MER1_type 0 224 181 542 220 85 0 chr13 38183856 38183974 -81560924 - MER58A DNA MER1_type 0 128 1 671 184 18 0 chr13 38184310 38184424 -81560474 - Tigger3(Golem) DNA MER2_type -4 3025 2910 435 235 0 0 chr13 38184430 38184511 -81560387 - Tigger3(Golem) DNA MER2_type -2948 81 1 763 128 0 32 chr13 38185060 38185185 -81559713 - L1PA8 LINE L1 0 6172 6052 2163 229 67 20 chr13 38186971 38187465 -81557433 - LTR40a LTR ERVL -2 517 1 1367 171 0 0 chr13 38187575 38187792 -81557106 + L1PA16 LINE L1 5950 6166 0 1542 136 0 21 chr13 38188451 38188686 -81556212 + AluSx SINE Alu 1 230 -82 2223 118 0 0 chr13 38188710 38189016 -81555882 + AluSc SINE Alu 1 306 -3 429 141 0 0 chr13 38189976 38190047 -81554851 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 181 341 82 12 chr13 38190104 38190189 -81554709 + L2 LINE L2 3172 3262 -10 22 0 0 0 chr13 38191281 38191303 -81553595 + AT_rich Low_complexity Low_complexity 1 22 0 195 350 25 0 chr13 38191463 38191543 -81553355 + L3 LINE CR1 1493 1574 -3 199 231 26 0 chr13 38191890 38191929 -81552969 - L2 LINE L2 -14 3258 3219 248 335 32 19 chr13 38192555 38192710 -81552188 + MLT1L LTR MaLR 450 606 -9 251 207 0 35 chr13 38194112 38194170 -81550728 + MER58A DNA MER1_type 28 83 -24 5239 106 15 18 chr13 38194170 38194964 -81549934 + L1PA16 LINE L1 5375 6166 0 474 202 56 0 chr13 38194994 38195083 -81549815 + MER58A DNA MER1_type 131 224 0 518 237 21 53 chr13 38195149 38195339 -81549559 + L2 LINE L2 3128 3311 -2 2118 130 3 0 chr13 38195817 38196116 -81548782 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr13 38197075 38197098 -81547800 + AT_rich Low_complexity Low_complexity 1 23 0 269 269 28 46 chr13 38197267 38197375 -81547523 + LTR48B LTR ERV1 1 106 -538 * 1384 217 39 77 chr13 38197342 38197808 -81547090 + MER39 LTR ERV1 260 707 0 361 291 36 55 chr13 38197826 38198046 -81546852 + L1ME LINE L1 5607 5822 -299 213 277 77 71 chr13 38198290 38198445 -81546453 + L2 LINE L2 2918 3073 -240 259 360 90 9 chr13 38198583 38198694 -81546204 + L2 LINE L2 3153 3272 0 3832 132 0 22 chr13 38200737 38200919 -81543979 + MER1A DNA MER1_type 1 186 -2514 1900 131 64 0 chr13 38200919 38201201 -81543697 - AluSx SINE Alu -12 300 1 3832 132 0 22 chr13 38201201 38201557 -81543341 + MER1A DNA MER1_type 186 527 0 990 275 86 43 chr13 38201882 38202087 -81542811 + LTR38 LTR ERV1 94 289 -267 2536 156 2 63 chr13 38202087 38202549 -81542349 - MER57B LTR ERV1 0 434 1 990 275 86 43 chr13 38202549 38202787 -81542111 + LTR38 LTR ERV1 289 556 0 1959 110 50 17 chr13 38202796 38203096 -81541802 - AluSg SINE Alu 0 310 1 21 0 0 0 chr13 38203247 38203268 -81541630 + AT_rich Low_complexity Low_complexity 1 21 0 1028 172 25 39 chr13 38203764 38203968 -81540930 - MER3 DNA MER1_type 0 209 9 256 259 32 127 chr13 38204290 38204510 -81540388 + LTR33A LTR ERVL 325 523 0 266 211 189 21 chr13 38206845 38206940 -81537958 - MIR SINE MIR -79 129 19 262 227 160 0 chr13 38207076 38207151 -81537747 + Charlie8 DNA MER1_type 118 204 -2213 23 54 0 0 chr13 38207553 38207590 -81537308 + AT_rich Low_complexity Low_complexity 1 37 0 2249 114 3 0 chr13 38207675 38207981 -81536917 + AluSg SINE Alu 1 307 -3 264 271 105 38 chr13 38207983 38208116 -81536782 - MIR SINE MIR -108 154 13 281 149 0 21 chr13 38208959 38209006 -81535892 + MIR SINE MIR 102 147 -61 1272 178 0 9 chr13 38210703 38210933 -81533965 + AluJo SINE Alu 84 311 -1 706 194 76 0 chr13 38210954 38211098 -81533800 + L1PB4 LINE L1 6000 6154 -2 2179 97 0 7 chr13 38211119 38211428 -81533470 + AluSx SINE Alu 1 307 0 290 220 68 61 chr13 38211753 38211885 -81533013 + MIR SINE MIR 63 195 -67 186 43 0 0 chr13 38211885 38211908 -81532990 + (TG)n Simple_repeat Simple_repeat 2 24 0 2316 75 4 0 chr13 38212719 38213000 -81531898 + AluSq SINE Alu 1 282 -31 271 0 0 0 chr13 38213000 38213030 -81531868 + (CAAAA)n Simple_repeat Simple_repeat 1 170 0 32 56 0 14 chr13 38213206 38213257 -81531641 + AT_rich Low_complexity Low_complexity 1 52 -18 1847 177 33 3 chr13 38213257 38213591 -81531307 - MER2 DNA MER2_type 0 344 1 32 56 0 14 chr13 38213591 38213610 -81531288 + AT_rich Low_complexity Low_complexity 52 70 0 1440 152 21 128 chr13 38214095 38214341 -81530557 - MLT1B LTR MaLR -7 383 201 1719 184 7 3 chr13 38214341 38214646 -81530252 - AluJo SINE Alu -6 306 1 1440 152 21 128 chr13 38214646 38214828 -81530070 - MLT1B LTR MaLR -189 201 1 187 305 34 68 chr13 38214841 38214959 -81529939 - MIR3 SINE MIR -8 200 87 286 368 60 8 chr13 38215188 38215305 -81529593 - MIR3 SINE MIR -84 124 2 1733 185 81 27 chr13 38216729 38216920 -81527978 + MLT1C LTR MaLR 1 180 -287 1915 156 10 10 chr13 38216920 38217215 -81527683 + AluJb SINE Alu 1 295 -17 1733 185 81 27 chr13 38217215 38217238 -81527660 + MLT1C LTR MaLR 180 200 -267 219 69 0 0 chr13 38217238 38217267 -81527631 + (CA)n Simple_repeat Simple_repeat 2 30 0 1733 185 81 27 chr13 38217267 38217494 -81527404 + MLT1C LTR MaLR 200 467 0 225 108 0 0 chr13 38218313 38218350 -81526548 + (TG)n Simple_repeat Simple_repeat 2 38 0 2112 132 6 9 chr13 38219051 38219391 -81525507 + MER1B DNA MER1_type 1 339 0 2280 113 3 0 chr13 38220218 38220527 -81524371 + AluSp SINE Alu 1 310 -3 541 254 0 8 chr13 38220728 38220858 -81524040 - MER3 DNA MER1_type -80 129 1 2874 3 0 0 chr13 38220908 38221218 -81523680 + AluYa5 SINE Alu 1 310 -1 949 179 17 101 chr13 38222377 38222635 -81522263 + MER33 DNA MER1_type 6 229 -2356 1782 169 0 17 chr13 38222635 38222936 -81521962 - AluJo SINE Alu -16 296 1 949 179 17 101 chr13 38222936 38223023 -81521875 + MER33 DNA MER1_type 229 322 -2 344 318 104 65 chr13 38224729 38224847 -81520051 + L2 LINE L2 2912 3024 -289 722 183 27 70 chr13 38224847 38225033 -81519865 + MER5B DNA MER1_type 1 178 0 344 318 104 65 chr13 38225033 38225298 -81519600 + L2 LINE L2 3024 3310 -3 2478 93 0 0 chr13 38229579 38229890 -81515008 + AluSx SINE Alu 2 312 0 209 59 59 0 chr13 38230189 38230223 -81514675 + GA-rich Low_complexity Low_complexity 5 40 0 440 293 48 6 chr13 38232182 38232349 -81512549 + MLT1J2 LTR MaLR 3 176 -274 270 251 61 25 chr13 38232437 38232561 -81512337 + MLT1J1 LTR MaLR 290 418 -28 620 290 71 44 chr13 38232876 38233049 -81511849 - MIR SINE MIR 0 262 78 2312 93 0 3 chr13 38233049 38233351 -81511547 + AluSg1 SINE Alu 1 301 -8 620 290 71 44 chr13 38233351 38233429 -81511469 - MIR SINE MIR -184 78 4 648 158 7 96 chr13 38233842 38233988 -81510910 - FLAM_A SINE Alu 0 133 1 1751 251 46 2 chr13 38234089 38234614 -81510284 - L1ME3A LINE L1 -12 6158 5611 539 268 0 8 chr13 38236636 38236759 -81508139 + L2 LINE L2 3191 3312 -1 30 0 0 0 chr13 38239406 38239436 -81505462 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 38240084 38240106 -81504792 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 38240251 38240281 -81504617 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 38241848 38241874 -81503024 + AT_rich Low_complexity Low_complexity 1 26 0 2116 117 47 3 chr13 38242718 38243017 -81501881 + AluSp SINE Alu 1 312 -1 2676 76 8 24 chr13 38243162 38243543 -81501355 - THE1C LTR MaLR 0 375 1 1142 165 0 0 chr13 38243823 38243999 -81500899 - AluSq SINE Alu -9 304 129 261 370 101 21 chr13 38244097 38244424 -81500474 - L2 LINE L2 -409 2905 2553 2774 207 84 26 chr13 38245306 38246232 -81498666 - L1ME1 LINE L1 -3 6163 5190 541 250 0 0 chr13 38246249 38246361 -81498537 - FLAM_A SINE Alu -18 115 4 1761 202 9 40 chr13 38246388 38246611 -81498287 - L1MB4 LINE L1 0 6180 5975 2446 90 3 0 chr13 38246611 38246923 -81497975 - AluSp SINE Alu 0 313 1 1761 202 9 40 chr13 38246923 38247129 -81497769 - L1MB4 LINE L1 -205 5975 5764 1242 183 10 29 chr13 38247155 38247467 -81497431 - L1ME1 LINE L1 -985 5161 4856 5794 229 85 16 chr13 38247489 38248144 -81496754 - L1ME1 LINE L1 -1794 4352 3743 2291 140 37 57 chr13 38248144 38248580 -81496318 + MSTA LTR MaLR 2 428 0 5794 229 85 16 chr13 38248580 38250003 -81494895 - L1ME1 LINE L1 -2403 3743 2131 1537 288 19 19 chr13 38250060 38250526 -81494372 + L2 LINE L2 1750 2215 -1099 671 293 79 27 chr13 38250527 38250948 -81493950 + LTR16A LTR ERVL 1 450 0 5503 87 93 0 chr13 38250966 38251722 -81493176 + LTR12 LTR ERV1 1 826 0 1053 58 0 0 chr13 38251722 38251855 -81493043 + LTR12 LTR ERV1 582 714 0 1353 268 39 88 chr13 38251862 38252306 -81492592 + L2 LINE L2 2235 2699 -614 1314 161 99 68 chr13 38252306 38252660 -81492238 + MLT1A1 LTR MaLR 1 365 0 1353 268 39 88 chr13 38252660 38253248 -81491650 + L2 LINE L2 2699 3302 -11 186 103 0 0 chr13 38253248 38253277 -81491621 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 520 336 129 4 chr13 38254579 38254811 -81490087 - MIR SINE MIR -1 261 1 4030 209 86 34 chr13 38254949 38255178 -81489720 + Charlie1a DNA MER1_type 70 286 -2475 2863 22 0 0 chr13 38255178 38255494 -81489404 + AluYb8 SINE Alu 1 316 -2 4030 209 86 34 chr13 38255494 38256577 -81488321 + Charlie1a DNA MER1_type 286 1451 -4 2181 168 30 5 chr13 38257614 38258018 -81486880 + MSTA LTR MaLR 3 416 -12 2496 51 3 0 chr13 38258025 38258320 -81486578 + AluY SINE Alu 1 296 -15 8612 170 33 14 chr13 38258335 38259953 -81484945 + MSTA-int LTR MaLR 2 1651 0 2655 123 28 14 chr13 38259953 38260375 -81484523 + MSTA LTR MaLR 1 428 0 559 260 0 8 chr13 38260751 38260878 -81484020 + FLAM_C SINE Alu 1 126 -17 1454 160 13 78 chr13 38261018 38261127 -81483771 - AluJo SINE Alu -25 287 172 2219 126 30 38 chr13 38261127 38261493 -81483405 + THE1B LTR MaLR 2 364 0 1454 160 13 78 chr13 38261493 38261690 -81483208 - AluJo SINE Alu -140 172 1 1722 179 4 4 chr13 38261931 38262211 -81482687 - AluJb SINE Alu -26 286 7 2331 105 3 0 chr13 38262228 38262533 -81482365 - AluSq SINE Alu -7 306 1 228 329 147 59 chr13 38262934 38263104 -81481794 + MIR3 SINE MIR 11 195 -13 210 118 0 0 chr13 38263324 38263358 -81481540 + (TC)n Simple_repeat Simple_repeat 1 34 0 1526 192 17 79 chr13 38263402 38263809 -81481089 + MSTD LTR MaLR 1 382 -14 4443 232 63 31 chr13 38263814 38264115 -81480783 + MSTD-int LTR MaLR 2 292 -1443 1736 151 100 6 chr13 38264115 38264446 -81480452 + MER47A DNA MER2_type 2 363 -3 4443 232 63 31 chr13 38264446 38265384 -81479514 + MSTD-int LTR MaLR 292 1281 -454 1012 231 78 11 chr13 38265385 38265653 -81479245 + MSTD LTR MaLR 104 389 -7 379 313 76 8 chr13 38267010 38267141 -81477757 - MIR SINE MIR -76 186 47 491 176 20 0 chr13 38267519 38267621 -81477277 - U13 snRNA snRNA 0 104 1 192 179 13 115 chr13 38270682 38270760 -81474138 - L2 LINE L2 -61 3252 3183 350 179 26 13 chr13 38271093 38271171 -81473727 - MER116 DNA Mariner -1 79 1 198 0 0 0 chr13 38272325 38272347 -81472551 + (TG)n Simple_repeat Simple_repeat 1 22 0 702 101 0 18 chr13 38273577 38273686 -81471212 + L1PA8 LINE L1 6066 6172 0 401 235 0 0 chr13 38274235 38274316 -81470582 + Tigger3(Golem) DNA MER2_type 1 81 -2948 619 184 18 0 chr13 38274322 38274436 -81470462 + Tigger3(Golem) DNA MER2_type 2910 3025 -4 496 220 85 0 chr13 38274772 38274890 -81470008 + MER58A DNA MER1_type 1 128 0 256 180 0 0 chr13 38274890 38274934 -81469964 + MER58A DNA MER1_type 181 224 0 2252 125 117 5 chr13 38275857 38276242 -81468656 - MSTA LTR MaLR 0 428 1 910 229 94 0 chr13 38276279 38276567 -81468331 - L1MC4 LINE L1 0 8042 7728 2429 87 0 6 chr13 38276723 38277034 -81467864 + AluSc SINE Alu 1 309 0 2553 61 0 0 chr13 38278020 38278330 -81466568 + AluSx SINE Alu 1 310 -2 791 197 0 0 chr13 38278680 38278827 -81466071 + MLT1A1 LTR MaLR 171 317 -48 345 277 37 0 chr13 38280129 38280254 -81464644 + L1ME1 LINE L1 3729 3873 -2273 * 1792 212 62 3 chr13 38280253 38280470 -81464428 + L1ME1 LINE L1 4855 5058 -1108 2214 109 0 10 chr13 38280470 38280773 -81464125 - AluSx SINE Alu -12 300 1 1792 212 62 3 chr13 38280773 38281297 -81463601 + L1ME1 LINE L1 5058 5636 -530 423 252 61 0 chr13 38281365 38281496 -81463402 + L1ME1 LINE L1 6026 6164 -2 195 42 0 0 chr13 38281934 38281958 -81462940 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1850 150 14 7 chr13 38282088 38282382 -81462516 + AluJb SINE Alu 1 296 -16 461 71 14 0 chr13 38282953 38283023 -81461875 + (TG)n Simple_repeat Simple_repeat 2 72 0 269 283 0 47 chr13 38283051 38283157 -81461741 + T-rich Low_complexity Low_complexity 4 104 0 4498 104 2 3 chr13 38284584 38285225 -81459673 - L1PA15 LINE L1 0 6165 5526 276 256 204 64 chr13 38286373 38286545 -81458353 - MIR SINE MIR -61 201 6 21 0 0 0 chr13 38287152 38287173 -81457725 + AT_rich Low_complexity Low_complexity 1 21 0 256 291 130 72 chr13 38289331 38289692 -81455206 + L3 LINE CR1 1151 1532 -45 233 382 10 10 chr13 38290311 38290413 -81454485 + MIR SINE MIR 12 113 -149 241 298 0 0 chr13 38291024 38291081 -81453817 + L2 LINE L2 3257 3313 0 3495 158 46 3 chr13 38291179 38291793 -81453105 + LTR48B LTR ERV1 1 640 -4 187 250 0 0 chr13 38293532 38293568 -81451330 - L2 LINE L2 -15 3257 3222 21 0 0 0 chr13 38293853 38293874 -81451024 + AT_rich Low_complexity Low_complexity 1 21 0 185 366 47 91 chr13 38294688 38295027 -81449871 - L2 LINE L2 -3 3269 2946 2154 104 0 7 chr13 38296373 38296670 -81448228 - AluSx SINE Alu -17 295 1 186 71 0 0 chr13 38297094 38297122 -81447776 + (CA)n Simple_repeat Simple_repeat 1 28 0 273 297 53 90 chr13 38298421 38298687 -81446211 - L2 LINE L2 -13 3259 3004 354 323 126 6 chr13 38298706 38298873 -81446025 - MER5A DNA MER1_type 0 189 3 964 110 0 0 chr13 38299912 38300039 -81444859 - FLAM_C SINE Alu -16 127 1 25 0 0 0 chr13 38300069 38300094 -81444804 + AT_rich Low_complexity Low_complexity 1 25 0 303 255 57 57 chr13 38301813 38301919 -81442979 - L2 LINE L2 -16 3297 3192 349 344 86 16 chr13 38301995 38302123 -81442775 - L2 LINE L2 -13 3259 3123 234 130 74 0 chr13 38302362 38302416 -81442482 + MLT2B1 LTR ERVL 463 520 0 354 362 87 0 chr13 38302839 38302966 -81441932 - L2 LINE L2 -13 3259 3122 395 350 68 39 chr13 38304538 38304849 -81440049 - L2 LINE L2 -61 3252 2933 546 302 146 62 chr13 38304880 38305377 -81439521 - L2 LINE L2 -646 2668 2099 2085 147 3 0 chr13 38305377 38305670 -81439228 + AluSx SINE Alu 3 296 -16 546 302 146 62 chr13 38305670 38305838 -81439060 - L2 LINE L2 -1215 2099 1947 362 298 104 42 chr13 38306190 38306499 -81438399 + L2 LINE L2 2143 2470 -844 464 310 91 22 chr13 38308027 38308266 -81436632 - MIR SINE MIR 0 262 2 229 348 0 0 chr13 38309569 38309638 -81435260 + MIR SINE MIR 85 153 -109 401 40 0 0 chr13 38309880 38309930 -81434968 + AluY SINE Alu 1 50 -260 996 110 7 0 chr13 38309930 38310066 -81434832 + AluSp SINE Alu 14 150 -163 2084 153 34 3 chr13 38310134 38310488 -81434410 + MLT1A1 LTR MaLR 1 365 0 406 325 70 6 chr13 38311462 38311619 -81433279 + MIR3 SINE MIR 24 190 -18 1911 135 7 7 chr13 38311726 38312008 -81432890 - AluJb SINE Alu -30 282 1 184 297 31 16 chr13 38312307 38312371 -81432527 + L3b LINE CR1 1293 1357 -226 795 168 0 0 chr13 38313879 38314016 -81430882 + MER3 DNA MER1_type 67 203 -6 228 314 91 58 chr13 38314169 38314290 -81430608 + L2 LINE L2 3148 3272 0 316 250 71 0 chr13 38314599 38314711 -81430187 - L1ME4a LINE L1 -4 6117 5998 430 199 71 50 chr13 38314780 38314806 -81430092 - L1ME4a LINE L1 -252 5869 5845 2016 129 3 49 chr13 38314806 38315132 -81429766 - AluSp SINE Alu -1 312 2 430 199 71 50 chr13 38315132 38315246 -81429652 - L1ME4a LINE L1 -276 5845 5726 1007 124 0 0 chr13 38315422 38315559 -81429339 + AluSq/x SINE Alu 1 137 -175 239 0 32 0 chr13 38315562 38315593 -81429305 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 326 307 54 83 chr13 38316505 38316746 -81428152 - MIR SINE MIR -21 241 8 208 310 0 0 chr13 38317930 38317988 -81426910 - L2 LINE L2 -12 3301 3244 225 0 0 0 chr13 38318015 38318040 -81426858 + (T)n Simple_repeat Simple_repeat 1 25 0 338 300 36 27 chr13 38318093 38318203 -81426695 + MIR SINE MIR 17 127 -81 1549 198 85 0 chr13 38318356 38318685 -81426213 - MLT1A1 LTR MaLR -8 357 1 2022 129 7 10 chr13 38321094 38321397 -81423501 - AluSx SINE Alu -10 302 1 243 360 0 0 chr13 38321575 38321664 -81423234 + L2 LINE L2 2577 2665 -649 615 258 107 30 chr13 38321867 38322138 -81422760 + MLT1K LTR MaLR 297 588 0 1253 123 15 15 chr13 38322425 38322620 -81422278 - AluJb SINE Alu 0 312 118 1056 153 6 12 chr13 38322620 38322790 -81422108 - AluJo SINE Alu -143 169 1 941 209 6 0 chr13 38323111 38323283 -81421615 - MER5A DNA MER1_type 0 189 17 252 256 13 26 chr13 38323422 38323500 -81421398 - MIR3 SINE MIR -123 85 9 265 215 46 0 chr13 38324421 38324486 -81420412 - MIR SINE MIR -139 123 56 230 279 82 66 chr13 38324502 38324572 -81420326 + MER5A DNA MER1_type 1 68 -121 1703 146 36 14 chr13 38324572 38324853 -81420045 + AluJo SINE Alu 1 287 -25 230 279 82 66 chr13 38324853 38324965 -81419933 + MER5A DNA MER1_type 68 186 -3 858 227 0 0 chr13 38325133 38325296 -81419602 - FRAM SINE Alu -17 159 1 1310 236 57 64 chr13 38325325 38325902 -81418996 + L2 LINE L2 2719 3311 -2 337 221 71 0 chr13 38325902 38326015 -81418883 + MER112 DNA MER1_type 81 201 -59 278 45 136 0 chr13 38326266 38326310 -81418588 + MADE1 DNA Mariner 31 80 0 21 0 0 0 chr13 38326374 38326395 -81418503 + AT_rich Low_complexity Low_complexity 1 21 0 1960 155 16 16 chr13 38326643 38327017 -81417881 - MLT1B LTR MaLR 0 390 17 202 289 0 66 chr13 38327585 38327661 -81417237 - L2 LINE L2 -10 3262 3192 * 623 283 130 40 chr13 38327653 38328006 -81416892 + L3 LINE CR1 1178 1562 -15 210 71 0 0 chr13 38328775 38328803 -81416095 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 438 244 111 15 chr13 38329975 38330110 -81414788 - MIR SINE MIR -94 168 21 344 153 0 28 chr13 38330121 38330193 -81414705 + CT-rich Low_complexity Low_complexity 1 70 0 326 248 20 67 chr13 38330228 38330262 -81414636 - L1MA10 LINE L1 0 6334 6003 2293 87 0 13 chr13 38330262 38330560 -81414338 - AluSx SINE Alu -18 294 1 2970 227 33 50 chr13 38330560 38331532 -81413366 - L1ME1 LINE L1 -16 6150 5225 429 240 8 8 chr13 38331543 38331668 -81413230 - L1ME1 LINE L1 -1015 5131 5007 30 69 0 0 chr13 38331756 38331814 -81413084 + AT_rich Low_complexity Low_complexity 1 58 0 1695 143 71 0 chr13 38331913 38332193 -81412705 + AluJo SINE Alu 1 300 -12 2419 90 0 0 chr13 38333108 38333408 -81411490 - AluSq SINE Alu -13 300 1 21 36 0 0 chr13 38333690 38333718 -81411180 + AT_rich Low_complexity Low_complexity 1 28 0 2624 48 0 0 chr13 38334556 38334866 -81410032 + AluY SINE Alu 1 310 -1 539 270 49 6 chr13 38335835 38335998 -81408900 - MIR SINE MIR -14 248 79 230 326 146 56 chr13 38336281 38336459 -81408439 + MIR3 SINE MIR 7 200 -8 232 310 0 0 chr13 38338886 38338957 -81405941 + MIR SINE MIR 56 126 -82 240 185 131 69 chr13 38339660 38339790 -81405108 + L2 LINE L2 2140 2277 -1037 269 213 0 0 chr13 38339871 38339932 -81404966 - MER94 DNA DNA -10 124 64 735 165 9 0 chr13 38339948 38340063 -81404835 - FLAM_C SINE Alu -17 116 1 232 277 0 0 chr13 38340067 38340132 -81404766 - MER94 DNA DNA -61 73 9 227 295 91 73 chr13 38340141 38340483 -81404415 + L2 LINE L2 2550 2897 -417 272 173 5 218 chr13 38340916 38341053 -81403845 + MER5B DNA MER1_type 2 125 -64 2200 131 3 0 chr13 38341190 38341495 -81403403 + AluSq SINE Alu 1 306 -7 564 221 156 7 chr13 38343016 38343170 -81401728 + MER5B DNA MER1_type 1 177 -1 1044 231 28 24 chr13 38344382 38344633 -81400265 - MIR SINE MIR -5 257 6 282 211 78 33 chr13 38345089 38345179 -81399719 + L3 LINE CR1 471 564 -1013 253 282 13 0 chr13 38345290 38345368 -81399530 + MIR SINE MIR 59 142 -66 210 321 38 61 chr13 38345473 38345523 -81399375 + L3 LINE CR1 930 980 -597 2233 36 96 0 chr13 38345523 38345803 -81399095 + AluY SINE Alu 1 307 -4 210 321 38 61 chr13 38345803 38345883 -81399015 + L3 LINE CR1 980 1057 -520 235 336 58 39 chr13 38346917 38347021 -81397877 - L2 LINE L2 -33 3239 3134 316 254 28 0 chr13 38348420 38348491 -81396407 + L2 LINE L2 3231 3303 -10 2287 124 0 0 chr13 38351321 38351627 -81393271 - AluSx SINE Alu -6 306 1 236 213 131 0 chr13 38351677 38351738 -81393160 - L2 LINE L2 -3 3310 3242 246 302 0 0 chr13 38351885 38351948 -81392950 - MIR SINE MIR -108 154 92 254 261 0 46 chr13 38352245 38352310 -81392588 + L2 LINE L2 3211 3272 0 669 206 24 0 chr13 38352371 38352497 -81392401 + FLAM_A SINE Alu 1 129 -4 609 280 35 54 chr13 38355453 38355786 -81389112 - MLT1J LTR MaLR 0 450 80 1332 228 121 24 chr13 38357102 38357524 -81387374 - MLT1C LTR MaLR -4 463 1 913 280 36 36 chr13 38358549 38358970 -81385928 + LTR16B LTR ERVL 3 423 -41 180 284 28 64 chr13 38359810 38359919 -81384979 - L3b LINE CR1 -359 1224 1120 2430 91 3 0 chr13 38360216 38360525 -81384373 - AluSx SINE Alu -2 310 1 285 292 103 17 chr13 38360658 38361092 -81383806 + L1MC4 LINE L1 7311 7777 -184 948 191 108 0 chr13 38361149 38361343 -81383555 - MER58A DNA MER1_type -8 216 2 21 0 0 0 chr13 38361540 38361561 -81383337 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 38362877 38362901 -81381997 + AT_rich Low_complexity Low_complexity 1 24 0 556 191 0 45 chr13 38364132 38364242 -81380656 - FLAM_C SINE Alu -38 105 1 185 286 20 0 chr13 38364310 38364359 -81380539 - MIR3 SINE MIR -23 185 136 2377 48 0 24 chr13 38364664 38365004 -81379894 + AluY SINE Alu 1 333 0 315 284 35 0 chr13 38365031 38365149 -81379749 + L1ME3 LINE L1 5991 6109 -53 209 236 181 42 chr13 38365613 38365685 -81379213 - L2 LINE L2 -4 3268 3187 2375 147 15 0 chr13 38365708 38366116 -81378782 - L1MB4 LINE L1 -8 6172 5759 210 310 40 40 chr13 38366255 38366355 -81378543 + L2 LINE L2 3172 3271 -1 314 317 150 42 chr13 38366534 38366701 -81378197 + MIR3 SINE MIR 14 198 -10 2492 59 0 13 chr13 38367822 38368129 -81376769 + AluY SINE Alu 1 303 -8 422 148 86 0 chr13 38368339 38368420 -81376478 + MIR SINE MIR 70 157 -105 1163 166 5 0 chr13 38368423 38368628 -81376270 + MER2 DNA MER2_type 1 206 -139 721 190 7 15 chr13 38368650 38368787 -81376111 + AluJo SINE Alu 1 136 -176 415 184 13 0 chr13 38368840 38368916 -81375982 + MER2 DNA MER2_type 268 344 -1 282 327 19 10 chr13 38368917 38369021 -81375877 + MIR SINE MIR 156 260 -2 340 326 49 43 chr13 38369124 38369308 -81375590 + MER5A DNA MER1_type 2 186 -3 570 165 173 0 chr13 38369314 38369447 -81375451 + MER5A DNA MER1_type 1 156 -33 193 275 58 29 chr13 38370198 38370267 -81374631 + L2 LINE L2 3193 3263 -9 617 243 6 24 chr13 38371555 38371724 -81373174 + L1MC4 LINE L1 6787 6952 -1090 998 222 32 16 chr13 38371733 38372058 -81372840 + L1ME1 LINE L1 5102 5433 -733 845 233 67 33 chr13 38372054 38372324 -81372574 + L1ME1 LINE L1 4837 5115 -1031 * 2028 244 86 30 chr13 38372314 38373012 -81371886 + L1ME1 LINE L1 5425 6161 -5 968 180 78 16 chr13 38373025 38373280 -81371618 + L1ME1 LINE L1 5891 6161 -5 236 159 0 95 chr13 38373773 38373836 -81371062 - L1MC4 LINE L1 -26 8016 7960 1157 211 30 32 chr13 38373874 38373986 -81370912 - L1M4 LINE L1 -1302 4844 4733 1935 167 50 18 chr13 38373986 38374370 -81370528 - MSTD LTR MaLR 0 396 1 1157 211 30 32 chr13 38374370 38374627 -81370271 - L1M4 LINE L1 -1413 4733 4476 826 267 152 38 chr13 38376106 38376291 -81368607 + MLT1H LTR MaLR 1 164 -385 1654 166 33 33 chr13 38376291 38376598 -81368300 + AluJo SINE Alu 1 307 -5 826 267 152 38 chr13 38376598 38376887 -81368011 + MLT1H LTR MaLR 164 529 -20 330 271 0 12 chr13 38378341 38378426 -81366472 + MIR3 SINE MIR 86 169 -39 2610 142 42 2 chr13 38378666 38379076 -81365822 + MSTB LTR MaLR 1 426 0 4870 178 97 14 chr13 38379076 38379543 -81365355 + MSTB-int LTR MaLR 1 428 -1223 1704 197 7 0 chr13 38379543 38379842 -81365056 + AluJo SINE Alu 1 301 -11 4870 178 97 14 chr13 38379842 38380418 -81364480 + MSTB-int LTR MaLR 428 1130 -521 311 254 0 0 chr13 38380445 38380516 -81364382 + MSTB-int LTR MaLR 1581 1651 0 1780 152 34 133 chr13 38380517 38380991 -81363907 + MSTB LTR MaLR 2 426 0 334 224 182 79 chr13 38381086 38381251 -81363647 + MIR SINE MIR 79 260 -2 184 269 87 91 chr13 38382441 38382660 -81362238 - L2 LINE L2 -15 3257 3040 435 317 32 27 chr13 38383077 38383263 -81361635 - MIR SINE MIR -51 211 25 2477 45 7 10 chr13 38383366 38383676 -81361222 - AluY SINE Alu -2 309 1 185 299 247 0 chr13 38384147 38384224 -81360674 + MER5A DNA MER1_type 11 106 -83 1582 170 51 11 chr13 38384343 38384619 -81360279 - AluJo SINE Alu -25 287 1 272 278 0 28 chr13 38384636 38384708 -81360190 + L2 LINE L2 3203 3272 0 441 309 67 24 chr13 38384716 38384881 -81360017 - MIR SINE MIR -71 191 20 242 109 0 0 chr13 38385195 38385241 -81359657 + LTR66 LTR ERVL 394 439 -171 333 303 0 0 chr13 38385247 38385336 -81359562 - L1MC4 LINE L1 -1339 6703 6615 352 229 0 49 chr13 38385522 38385705 -81359193 + (CATATA)n Simple_repeat Simple_repeat 2 175 0 307 326 0 0 chr13 38385705 38385794 -81359104 - L1MC4 LINE L1 -1339 6703 6615 225 154 0 0 chr13 38385794 38385833 -81359065 + (CA)n Simple_repeat Simple_repeat 1 39 0 441 0 0 0 chr13 38386205 38386254 -81358644 + (CA)n Simple_repeat Simple_repeat 2 50 0 180 163 0 0 chr13 38386317 38386360 -81358538 + A-rich Low_complexity Low_complexity 5 47 0 182 274 20 0 chr13 38386966 38387017 -81357881 + MIR SINE MIR 95 146 -62 1926 152 26 0 chr13 38389572 38389874 -81355024 + AluJo SINE Alu 1 310 -2 585 266 80 35 chr13 38389938 38390137 -81354761 + MIR SINE MIR 47 254 -8 200 86 29 0 chr13 38390142 38390177 -81354721 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 257 247 37 0 chr13 38390604 38390685 -81354213 - MER58C DNA MER1_type -10 205 122 380 253 19 2 chr13 38390707 38390849 -81354049 - MER58 DNA MER1_type -71 144 2 1254 182 0 4 chr13 38390858 38391083 -81353815 + MER58A DNA MER1_type 1 224 0 401 298 11 0 chr13 38392145 38392239 -81352659 + L2 LINE L2 3158 3252 -20 567 66 0 0 chr13 38392242 38392318 -81352580 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 496 363 109 11 chr13 38392525 38392891 -81352007 + L3 LINE CR1 179 580 -997 1620 203 10 13 chr13 38393246 38393557 -81351341 - AluJo SINE Alu -2 310 1 304 200 57 9 chr13 38393625 38393730 -81351168 + (TATAA)n Simple_repeat Simple_repeat 3 112 0 186 171 0 0 chr13 38393868 38393909 -81350989 + (TG)n Simple_repeat Simple_repeat 1 41 0 4594 151 159 0 chr13 38394254 38395134 -81349764 + LTR28 LTR ERV1 1 1020 0 378 0 0 0 chr13 38395402 38395444 -81349454 + (TG)n Simple_repeat Simple_repeat 1 42 0 268 369 150 6 chr13 38397147 38397307 -81347591 + MIR SINE MIR 4 186 -76 2493 63 0 3 chr13 38397314 38397614 -81347284 + AluY SINE Alu 1 299 -12 2048 126 10 0 chr13 38397903 38398196 -81346702 + AluSx SINE Alu 1 296 -16 232 118 0 0 chr13 38399723 38399757 -81345141 + MER45A DNA AcHobo 79 112 -66 1180 173 14 34 chr13 38399757 38399965 -81344933 - AluJo SINE Alu -22 290 87 435 176 0 0 chr13 38399965 38400039 -81344859 + MER45A DNA AcHobo 105 178 0 238 255 167 59 chr13 38400100 38400202 -81344696 - L2 LINE L2 0 3313 3201 1887 128 7 38 chr13 38400752 38401041 -81343857 - AluSx SINE Alu -19 293 14 289 299 110 78 chr13 38401927 38402359 -81342539 - L2 LINE L2 -182 3090 2632 334 259 12 12 chr13 38403679 38403760 -81341138 + L2 LINE L2 3220 3300 -13 273 288 128 71 chr13 38403775 38404001 -81340897 - MIR SINE MIR -2 260 22 211 176 0 0 chr13 38404642 38404676 -81340222 + polypurine Low_complexity Low_complexity 3 36 0 230 398 24 10 chr13 38405091 38405297 -81339601 + L2 LINE L2 2232 2440 -874 308 270 112 0 chr13 38406117 38406206 -81338692 - L2 LINE L2 -40 3232 3134 2024 153 3 7 chr13 38406280 38406588 -81338310 - AluJb SINE Alu -5 307 1 311 279 171 66 chr13 38406929 38407356 -81337542 + L2 LINE L2 2842 3313 0 2229 74 60 0 chr13 38407373 38407658 -81337240 + AluSp SINE Alu 1 302 -11 24 77 0 0 chr13 38408729 38408781 -81336117 + AT_rich Low_complexity Low_complexity 1 52 0 551 199 152 18 chr13 38408782 38408953 -81335945 + MER57A LTR ERV1 206 399 -4 2273 114 0 0 chr13 38409988 38410286 -81334612 + AluSq SINE Alu 1 298 -15 1029 280 80 41 chr13 38410714 38411200 -81333698 - LTR33A LTR ERVL 0 523 19 354 316 128 30 chr13 38411319 38411452 -81333446 + L2 LINE L2 3109 3254 -18 331 181 162 0 chr13 38411579 38411684 -81333214 + MER103 DNA DNA 12 133 -33 2145 102 27 14 chr13 38412229 38412522 -81332376 - AluSg SINE Alu -13 297 1 430 242 12 50 chr13 38413365 38413526 -81331372 - MER103 DNA DNA -11 155 1 325 305 54 24 chr13 38414737 38414904 -81329994 + MER5A DNA MER1_type 3 174 -15 2175 130 0 0 chr13 38414927 38415226 -81329672 + AluSq SINE Alu 1 299 -14 14622 30 4 1 chr13 38415400 38418263 -81326635 + L1PA4 LINE L1 3304 6155 0 2024 133 17 0 chr13 38418412 38418705 -81326193 - AluSx SINE Alu -13 299 2 223 113 75 0 chr13 38419221 38419274 -81325624 + (TA)n Simple_repeat Simple_repeat 2 58 0 762 229 94 0 chr13 38419499 38419669 -81325229 + MER5A DNA MER1_type 4 189 0 2229 70 0 7 chr13 38421652 38421970 -81322928 - AluY SINE Alu 0 316 1 21 0 0 0 chr13 38426257 38426278 -81318620 + GC_rich Low_complexity Low_complexity 1 21 0 209 200 20 0 chr13 38426328 38426378 -81318520 + C-rich Low_complexity Low_complexity 4 54 0 282 180 0 0 chr13 38426974 38427035 -81317863 + CT-rich Low_complexity Low_complexity 2 62 0 678 173 100 20 chr13 38427595 38427745 -81317153 + MER20 DNA MER1_type 35 196 -23 274 276 181 39 chr13 38428623 38428750 -81316148 - MIR3 SINE MIR -28 180 36 245 268 0 12 chr13 38429379 38429461 -81315437 + MLT1L LTR MaLR 533 613 -2 233 182 26 65 chr13 38429854 38429900 -81314998 + MLT1J2 LTR MaLR 60 106 -344 3789 169 48 69 chr13 38429900 38430333 -81314565 + MER21A LTR ERV1 1 442 -489 219 36 0 0 chr13 38430333 38430361 -81314537 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3789 169 48 69 chr13 38430361 38430372 -81314526 + MER21A LTR ERV1 442 452 -479 2053 112 4 0 chr13 38430372 38430674 -81314224 + AluSx SINE Alu 6 308 0 3789 169 48 69 chr13 38430674 38431178 -81313720 + MER21A LTR ERV1 452 931 0 233 182 26 65 chr13 38431178 38431208 -81313690 + MLT1J2 LTR MaLR 106 133 -317 200 244 0 0 chr13 38432089 38432118 -81312780 + CT-rich Low_complexity Low_complexity 4 35 -13 2414 62 0 0 chr13 38432118 38432406 -81312492 - AluY SINE Alu 0 311 24 200 244 0 0 chr13 38432406 38432421 -81312477 + CT-rich Low_complexity Low_complexity 34 48 0 26 50 0 0 chr13 38432955 38432995 -81311903 + AT_rich Low_complexity Low_complexity 1 40 0 1540 116 3 99 chr13 38433393 38433686 -81311212 + AluSx SINE Alu 48 312 0 214 213 13 13 chr13 38433956 38434031 -81310867 + GA-rich Low_complexity Low_complexity 2 76 0 397 98 0 16 chr13 38436115 38436176 -81308722 + MADE1 DNA Mariner 1 60 -20 1997 151 6 12 chr13 38436216 38436561 -81308337 - MLT1A1 LTR MaLR -22 343 1 715 283 19 38 chr13 38437333 38437386 -81307512 + MIR SINE MIR 55 107 -155 2283 133 11 22 chr13 38437386 38437754 -81307144 + THE1B LTR MaLR 1 364 0 715 283 19 38 chr13 38437754 38437912 -81306986 + MIR SINE MIR 107 262 0 2348 102 0 9 chr13 38438328 38438643 -81306255 + AluSq SINE Alu 1 312 -1 23 54 0 0 chr13 38439238 38439275 -81305623 + AT_rich Low_complexity Low_complexity 1 37 0 2438 95 0 0 chr13 38439687 38439992 -81304906 + AluSq SINE Alu 1 305 -8 244 263 13 13 chr13 38440058 38440134 -81304764 + MLT1F1 LTR MaLR 50 125 -442 2186 208 58 21 chr13 38440134 38440705 -81304193 + L1MD3 LINE L1 7404 7995 0 699 143 40 16 chr13 38440782 38440908 -81303990 - FLAM_C SINE Alu 0 133 5 324 271 57 29 chr13 38440968 38441108 -81303790 - MIR SINE MIR -70 192 49 15794 172 44 13 chr13 38441192 38443011 -81301887 + L1PBa LINE L1 1 1763 -5099 2135 93 14 3 chr13 38443011 38443300 -81301598 - AluSq SINE Alu -21 292 1 15794 172 44 13 chr13 38443300 38445259 -81299639 + L1PBa LINE L1 1763 3983 -2879 362 21 0 21 chr13 38445259 38445307 -81299591 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 15794 172 44 13 chr13 38445307 38446692 -81298206 + L1PBa LINE L1 3983 5324 -1538 491 237 20 40 chr13 38446726 38446878 -81298020 - L2 LINE L2 0 3313 3165 627 301 89 17 chr13 38446947 38447429 -81297469 + L1ME LINE L1 5255 5771 -391 309 273 0 0 chr13 38447988 38448065 -81296833 - Charlie8 DNA MER1_type -5 2412 2336 1696 168 3 7 chr13 38448147 38448432 -81296466 + AluJo SINE Alu 1 284 -28 369 0 0 0 chr13 38448432 38448473 -81296425 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr13 38448472 38448493 -81296405 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 308 89 0 54 chr13 38448539 38448595 -81296303 + L1MB3 LINE L1 5912 5964 -219 917 238 24 11 chr13 38448661 38448930 -81295968 + L1MC4 LINE L1 6855 7119 -923 2027 164 0 0 chr13 38448930 38449240 -81295658 + AluSx SINE Alu 1 310 -2 917 238 24 11 chr13 38449240 38449421 -81295477 + L1MC4 LINE L1 7119 7504 -538 1883 169 16 0 chr13 38449433 38449800 -81295098 - L1MB3 LINE L1 -109 6310 5938 1036 63 8 0 chr13 38449800 38449926 -81294972 - AluSg SINE Alu -183 127 1 21 36 0 0 chr13 38449930 38449958 -81294940 + AT_rich Low_complexity Low_complexity 1 28 0 992 103 0 109 chr13 38449962 38450182 -81294716 + AluSg/x SINE Alu 127 327 0 2855 201 42 37 chr13 38450183 38451156 -81293742 - L1MB3 LINE L1 -477 5942 4958 797 159 0 36 chr13 38451156 38451294 -81293604 - FLAM_C SINE Alu 0 133 1 2855 201 42 37 chr13 38451294 38451675 -81293223 - L1MB3 LINE L1 -1461 4958 4580 * 10386 187 53 45 chr13 38451672 38452507 -81292391 - L1MB3 LINE L1 -2745 3637 2810 1896 145 28 0 chr13 38452507 38452790 -81292108 - AluSq SINE Alu -22 291 1 10386 187 53 45 chr13 38452790 38453220 -81291678 - L1MB3 LINE L1 -3572 2810 2385 317 24 24 0 chr13 38453220 38453262 -81291636 + (TG)n Simple_repeat Simple_repeat 2 44 0 10386 187 53 45 chr13 38453262 38453365 -81291533 - L1MB3 LINE L1 -3997 2385 2284 1837 203 3 0 chr13 38453365 38453676 -81291222 - AluJb SINE Alu 0 312 1 10386 187 53 45 chr13 38453676 38455898 -81289000 - L1MB3 LINE L1 -4098 2284 24 2023 120 10 10 chr13 38456576 38456875 -81288023 + AluSc SINE Alu 2 300 -9 451 57 11 45 chr13 38456875 38456963 -81287935 + (GGAA)n Simple_repeat Simple_repeat 1 85 0 2131 107 3 17 chr13 38457245 38457545 -81287353 + AluSx SINE Alu 1 296 -16 27 49 0 0 chr13 38458565 38458606 -81286292 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr13 38459273 38459308 -81285590 + AT_rich Low_complexity Low_complexity 1 35 0 291 196 0 0 chr13 38459612 38459658 -81285240 - MER5A DNA MER1_type -10 179 134 212 358 32 21 chr13 38459625 38459720 -81285178 + MER5A DNA MER1_type 35 130 -59 * 205 139 56 0 chr13 38459768 38459804 -81285094 + CT-rich Low_complexity Low_complexity 5 42 0 2099 117 3 0 chr13 38459873 38460163 -81284735 + AluSx SINE Alu 1 291 -21 1412 51 0 6 chr13 38460334 38460510 -81284388 - AluY SINE Alu -18 293 119 974 229 57 45 chr13 38460617 38461098 -81283800 + LTR10B LTR ERV1 17 542 -5 1096 128 24 12 chr13 38461390 38461554 -81283344 + AluSg/x SINE Alu 137 302 -10 402 21 0 0 chr13 38461659 38461706 -81283192 + (TG)n Simple_repeat Simple_repeat 1 47 0 5563 60 29 7 chr13 38461874 38462593 -81282305 + MER4E LTR ERV1 1 739 -27 2158 105 7 10 chr13 38462593 38462887 -81282011 + AluSp SINE Alu 1 293 -20 5563 60 29 7 chr13 38462887 38462916 -81281982 + MER4E LTR ERV1 739 766 0 744 261 41 59 chr13 38462934 38463325 -81281573 + MER51-int LTR ERV1 3452 8576 -343 1975 152 129 62 chr13 38463545 38464064 -81280834 - MER41A LTR ERV1 0 554 1 763 116 16 8 chr13 38464070 38464191 -81280707 + MER51-int LTR ERV1 7667 7788 -28 910 127 0 36 chr13 38464191 38464357 -81280541 + MER51C LTR ERV1 481 640 0 933 148 22 50 chr13 38464386 38464568 -81280330 - AluJb SINE Alu -18 294 118 459 296 159 6 chr13 38464854 38465030 -81279868 - L3 LINE CR1 -5 1572 1370 2282 109 0 10 chr13 38465201 38465512 -81279386 - AluSc SINE Alu -1 308 1 1027 256 66 63 chr13 38465945 38466358 -81278540 + Charlie7 DNA MER1_type 8 425 -2187 2272 103 0 31 chr13 38466358 38466677 -81278221 + AluSg SINE Alu 1 309 -1 1027 256 66 63 chr13 38466677 38466821 -81278077 + Charlie7 DNA MER1_type 425 567 -2045 236 128 0 0 chr13 38466995 38467034 -81277864 + Charlie7 DNA MER1_type 2274 2312 -300 25 65 0 0 chr13 38467077 38467123 -81277775 + AT_rich Low_complexity Low_complexity 1 46 0 1139 196 33 121 chr13 38467306 38467637 -81277261 + AluJb SINE Alu 1 302 0 23 0 0 0 chr13 38467693 38467716 -81277182 + AT_rich Low_complexity Low_complexity 1 23 0 1365 226 67 35 chr13 38467758 38468016 -81276882 - MLT1A1 LTR MaLR -13 352 79 4540 50 2 0 chr13 38468016 38468574 -81276324 - L1PA8 LINE L1 -2 6170 5612 1365 226 67 35 chr13 38468574 38468656 -81276242 - MLT1A1 LTR MaLR -286 79 1 334 315 108 79 chr13 38468656 38468961 -81275937 - L2 LINE L2 -31 3241 2928 365 286 8 8 chr13 38469813 38469939 -81274959 + LTR67 LTR ERVL 426 551 -6 432 362 68 51 chr13 38469970 38470280 -81274618 - L2 LINE L2 -5 3267 2945 1970 170 11 11 chr13 38470280 38470645 -81274253 + MLT1A1 LTR MaLR 1 365 0 432 362 68 51 chr13 38470645 38470787 -81274111 - L2 LINE L2 -327 2945 2807 198 206 0 0 chr13 38470855 38470918 -81273980 + T-rich Low_complexity Low_complexity 1 63 0 191 328 0 31 chr13 38470960 38471024 -81273874 - L2 LINE L2 -575 2739 2678 21 36 0 0 chr13 38471155 38471183 -81273715 + AT_rich Low_complexity Low_complexity 1 28 0 1883 159 0 3 chr13 38471183 38471472 -81273426 - AluSx SINE Alu -24 288 1 961 111 217 21 chr13 38471877 38472066 -81272832 + MER30 DNA MER1_type 5 230 0 2149 119 30 0 chr13 38472135 38472438 -81272460 - AluSx SINE Alu 0 312 1 327 263 66 33 chr13 38473110 38473290 -81271608 - L1MC4a LINE L1 -206 5915 5723 335 220 20 0 chr13 38473313 38473413 -81271485 + CT-rich Low_complexity Low_complexity 4 105 0 1408 223 81 0 chr13 38473494 38473804 -81271094 + MLT1F LTR MaLR 204 538 -4 1238 156 33 0 chr13 38473822 38474034 -81270864 + MER20 DNA MER1_type 1 219 0 1758 158 3 17 chr13 38474068 38474366 -81270532 - AluJb SINE Alu -18 294 1 273 182 0 0 chr13 38474373 38474428 -81270470 + CT-rich Low_complexity Low_complexity 2 56 0 1849 178 3 3 chr13 38474463 38474766 -81270132 - AluJb SINE Alu -9 303 1 1300 119 0 0 chr13 38474785 38474962 -81269936 - AluSg/x SINE Alu 0 312 136 6384 32 2 14 chr13 38475910 38476698 -81268200 - L1P LINE L1 -1259 4887 4109 486 0 0 0 chr13 38479205 38479259 -81265639 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 22 80 0 0 chr13 38480078 38480128 -81264770 + AT_rich Low_complexity Low_complexity 1 50 0 360 43 0 0 chr13 38480144 38480190 -81264708 + (CA)n Simple_repeat Simple_repeat 2 47 0 493 184 0 44 chr13 38480257 38480371 -81264527 - L1MA4 LINE L1 -40 6260 6152 244 100 100 0 chr13 38480759 38480809 -81264089 - MLT2A1 LTR ERVL 0 453 399 2842 86 20 13 chr13 38480864 38481261 -81263637 - MLT2A1 LTR ERVL -44 400 1 1875 151 3 0 chr13 38481604 38481889 -81263009 + AluSg SINE Alu 22 307 -3 180 0 0 0 chr13 38481937 38481957 -81262941 + (T)n Simple_repeat Simple_repeat 1 20 0 235 323 21 11 chr13 38482971 38483064 -81261834 - L2 LINE L2 0 3313 3220 333 149 0 0 chr13 38483064 38483131 -81261767 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 311 266 114 93 chr13 38483131 38483421 -81261477 - L2 LINE L2 -824 2490 2195 579 240 8 8 chr13 38483715 38483844 -81261054 + FLAM_A SINE Alu 1 129 -4 278 294 127 0 chr13 38484340 38484466 -81260432 - MIR SINE MIR 0 262 121 2446 70 0 3 chr13 38587116 38587428 -81157470 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 38587676 38587697 -81157201 + AT_rich Low_complexity Low_complexity 1 21 0 317 173 62 0 chr13 38587903 38587984 -81156914 - L1MB4 LINE L1 -2 6178 6093 4732 130 2 1 chr13 38588006 38588904 -81155994 - L1MA4 LINE L1 -289 6011 5113 3335 173 30 7 chr13 38588909 38589638 -81155260 + L1MA4 LINE L1 4336 5081 -1065 242 346 8 60 chr13 38589711 38589844 -81155054 + MIR SINE MIR 49 174 -88 31 26 0 0 chr13 38591167 38591205 -81153693 + AT_rich Low_complexity Low_complexity 1 38 0 307 71 0 0 chr13 38591207 38591249 -81153649 - AluSx SINE Alu -8 293 252 2043 105 4 0 chr13 38591249 38591525 -81153373 - AluSx SINE Alu -35 277 1 196 238 0 0 chr13 38591642 38591684 -81153214 + MIR SINE MIR 103 144 -64 2341 70 6 22 chr13 38591970 38592286 -81152612 - AluY SINE Alu 0 311 1 694 251 17 17 chr13 38594882 38595057 -81149841 + MIR SINE MIR 88 262 0 226 272 44 44 chr13 38595765 38595879 -81149019 - LTR33 LTR ERVL -384 137 24 2389 85 0 3 chr13 38595977 38596284 -81148614 - AluSx SINE Alu -6 306 1 211 133 67 0 chr13 38597804 38597877 -81147021 + A-rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr13 38598714 38598735 -81146163 + AT_rich Low_complexity Low_complexity 1 21 0 38401 69 7 4 chr13 38598740 38604875 -81140023 - L1PA5 LINE L1 -3 6151 2 2690 156 25 18 chr13 38605511 38606172 -81138726 + MER72 LTR ERV1 1 722 0 360 269 78 60 chr13 38609312 38609580 -81135318 + MARNA DNA Mariner 287 559 -27 246 314 69 29 chr13 38609714 38609816 -81135082 + MIR SINE MIR 26 131 -77 935 188 30 10 chr13 38611096 38611293 -81133605 - LTR40a LTR ERVL -1 518 318 332 331 39 0 chr13 38611287 38611465 -81133433 + MLT1L LTR MaLR 431 615 0 * 942 309 140 50 chr13 38611468 38612216 -81132682 - L2 LINE L2 -676 2638 1823 345 381 67 3 chr13 38612612 38612972 -81131926 + L2 LINE L2 1713 2095 -1219 321 303 28 67 chr13 38614941 38615119 -81129779 - L2 LINE L2 -420 2894 2724 740 234 126 14 chr13 38616115 38616337 -81128561 - MIR SINE MIR -10 252 6 2502 272 140 20 chr13 38616737 38617665 -81127233 + L2 LINE L2 1264 2302 -1012 275 250 0 24 chr13 38617744 38617828 -81127070 + MLT1L LTR MaLR 2 83 -532 1117 152 29 3 chr13 38617858 38618193 -81126705 - MSTB1 LTR MaLR 0 432 1 774 262 88 25 chr13 38618196 38618638 -81126260 + MLT1L LTR MaLR 124 593 -22 410 196 10 0 chr13 38618936 38619038 -81125860 + CT-rich Low_complexity Low_complexity 3 105 0 788 308 97 31 chr13 38619295 38619895 -81125003 - L2 LINE L2 -2 3311 2672 742 216 66 62 chr13 38619896 38620137 -81124761 - MLT1D LTR MaLR -261 244 3 222 37 0 0 chr13 38620152 38620179 -81124719 + (GA)n Simple_repeat Simple_repeat 1 27 0 1695 186 3 32 chr13 38620232 38620544 -81124354 - AluJb SINE Alu -9 303 1 606 243 44 0 chr13 38620744 38620880 -81124018 + L2 LINE L2 3172 3313 0 1608 188 33 23 chr13 38621572 38621876 -81123022 + AluJo SINE Alu 3 309 -3 261 194 14 0 chr13 38622644 38622716 -81122182 + L1MC2 LINE L1 6261 7779 -6 24 32 0 0 chr13 38623143 38623174 -81121724 + AT_rich Low_complexity Low_complexity 1 31 0 375 242 50 72 chr13 38623578 38623758 -81121140 + L1ME4a LINE L1 5219 5387 -873 2301 112 0 0 chr13 38623758 38624061 -81120837 - AluSx SINE Alu -9 303 1 375 242 50 72 chr13 38624061 38624173 -81120725 + L1ME4a LINE L1 5387 5500 -760 227 252 38 30 chr13 38624469 38624600 -81120298 + L1ME4a LINE L1 5813 5944 -177 183 268 169 0 chr13 38625777 38625848 -81119050 - MIR SINE MIR -91 117 35 22 0 0 0 chr13 38626271 38626293 -81118605 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 38626773 38626800 -81118098 + AT_rich Low_complexity Low_complexity 1 27 0 181 222 0 0 chr13 38627396 38627432 -81117466 + L2 LINE L2 3218 3253 -19 504 206 21 7 chr13 38627436 38627577 -81117321 + GA-rich Low_complexity Low_complexity 3 145 0 2345 107 0 3 chr13 38628416 38628725 -81116173 + AluSx SINE Alu 1 308 -4 2011 127 23 13 chr13 38628878 38629186 -81115712 - AluSx SINE Alu -1 311 1 629 259 63 44 chr13 38629187 38629392 -81115506 - MIR SINE MIR -1 261 53 399 292 65 18 chr13 38630700 38630868 -81114030 + MIR SINE MIR 73 248 -14 183 295 49 16 chr13 38631779 38631840 -81113058 - L2 LINE L2 -12 3301 3239 304 307 53 59 chr13 38632624 38632927 -81111971 - LTR33 LTR ERVL 0 521 221 249 267 40 0 chr13 38632965 38633066 -81111832 - LTR33 LTR ERVL -413 108 4 366 292 52 84 chr13 38633120 38633370 -81111528 + L1M4 LINE L1 8 249 -6293 4797 232 49 23 chr13 38633634 38637340 -81107558 + L1M4 LINE L1 543 4428 -2216 303 303 25 76 chr13 38637359 38637557 -81107341 - MIR SINE MIR -14 248 61 210 91 0 0 chr13 38638631 38638664 -81106234 + (TC)n Simple_repeat Simple_repeat 1 33 0 2045 114 23 16 chr13 38638664 38638970 -81105928 - AluSc SINE Alu -1 308 1 23 0 0 0 chr13 38640287 38640310 -81104588 + AT_rich Low_complexity Low_complexity 1 23 0 2376 77 0 3 chr13 38640830 38641127 -81103771 - AluSp SINE Alu -17 296 1 787 205 53 46 chr13 38641585 38641745 -81103153 + L1MC4 LINE L1 7756 7920 -122 420 20 0 0 chr13 38641745 38641794 -81103104 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 787 205 53 46 chr13 38641794 38641916 -81102982 + L1MC4 LINE L1 7920 8040 -2 421 294 127 27 chr13 38642300 38642521 -81102377 - MIR SINE MIR -17 245 3 211 309 0 0 chr13 38642550 38642605 -81102293 - L2 LINE L2 -9 3263 3209 460 319 38 6 chr13 38642816 38642973 -81101925 - MIR3 SINE MIR -9 199 38 255 114 0 0 chr13 38643109 38643153 -81101745 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 33 0 0 chr13 38643674 38643704 -81101194 + (TG)n Simple_repeat Simple_repeat 1 30 0 956 224 85 71 chr13 38644673 38645084 -81099814 - MER39 LTR ERV1 -41 666 250 261 231 0 15 chr13 38645060 38645125 -81099773 - MER34 LTR ERV1 -429 113 50 * 287 295 116 23 chr13 38645723 38645852 -81099046 - MIR3 SINE MIR -37 171 31 870 148 7 7 chr13 38647140 38647275 -81097623 + FRAM SINE Alu 11 145 -31 21 0 0 0 chr13 38647438 38647459 -81097439 + AT_rich Low_complexity Low_complexity 1 21 0 2005 219 86 2 chr13 38648484 38648950 -81095948 + MLT1D LTR MaLR 1 505 0 724 183 0 0 chr13 38650137 38650257 -81094641 - AluJb SINE Alu -192 120 1 311 238 299 7 chr13 38650629 38650776 -81094122 + MIR3 SINE MIR 13 202 -6 2335 141 20 66 chr13 38652138 38652626 -81092272 - MER31B LTR ERV1 0 466 1 2429 82 0 3 chr13 38653026 38653331 -81091567 + AluSx SINE Alu 1 304 -8 207 266 97 0 chr13 38653380 38653474 -81091424 + MIR SINE MIR 50 154 -108 232 214 0 54 chr13 38653884 38653940 -81090958 + L2 LINE L2 3220 3272 0 24 0 0 0 chr13 38654091 38654115 -81090783 + AT_rich Low_complexity Low_complexity 1 24 0 1418 162 0 0 chr13 38654124 38654340 -81090558 - AluJo SINE Alu -10 302 87 836 255 111 15 chr13 38654420 38654691 -81090207 - L2 LINE L2 -4 3309 3013 518 294 92 14 chr13 38654931 38655149 -81089749 - L2 LINE L2 -345 2969 2735 390 21 0 0 chr13 38655157 38655204 -81089694 + (TG)n Simple_repeat Simple_repeat 2 48 0 1631 179 63 24 chr13 38655204 38655735 -81089163 - MLT2A2 LTR ERVL -5 549 1 2736 166 2 44 chr13 38655736 38656126 -81088772 - L1MB3 LINE L1 -10 6173 5813 411 43 0 43 chr13 38656126 38656195 -81088703 + (TA)n Simple_repeat Simple_repeat 1 66 0 2736 166 2 44 chr13 38656195 38656372 -81088526 - L1MB3 LINE L1 -370 5813 5630 539 250 323 0 chr13 38656372 38656604 -81088294 - L2 LINE L2 -563 2751 2445 183 42 0 0 chr13 38656813 38656837 -81088061 + (TG)n Simple_repeat Simple_repeat 2 25 0 366 260 208 0 chr13 38657225 38657379 -81087519 - MIR SINE MIR -7 255 70 214 264 56 28 chr13 38658802 38658874 -81086024 + MIR3 SINE MIR 81 154 -54 240 250 60 0 chr13 38658901 38658985 -81085913 - LTR67 LTR ERVL -3 554 466 669 246 7 115 chr13 38660394 38660682 -81084216 + L2 LINE L2 3055 3311 -2 264 30 0 0 chr13 38661139 38661172 -81083726 + (TG)n Simple_repeat Simple_repeat 2 34 0 403 259 84 78 chr13 38661755 38662099 -81082799 - HAL1 LINE L1 -879 1628 1283 416 297 116 60 chr13 38662154 38662800 -81082098 - HAL1 LINE L1 -1778 729 48 304 209 0 45 chr13 38663116 38663183 -81081715 - L2 LINE L2 0 3313 3250 886 329 90 26 chr13 38663633 38663704 -81081194 + L2 LINE L2 2365 2430 -842 2373 174 26 9 chr13 38663704 38664159 -81080739 - MLT1C LTR MaLR -4 463 1 886 329 90 26 chr13 38664159 38664735 -81080163 + L2 LINE L2 2430 3051 -221 1144 233 152 37 chr13 38664755 38665184 -81079714 + MLT1D LTR MaLR 22 499 -6 242 310 76 44 chr13 38665235 38665393 -81079505 + L2 LINE L2 3083 3245 -27 563 290 35 66 chr13 38666096 38666413 -81078485 + MLT1K LTR MaLR 167 473 -115 214 243 14 40 chr13 38667948 38668022 -81076876 + (TG)n Simple_repeat Simple_repeat 2 73 0 300 233 0 0 chr13 38668043 38668116 -81076782 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 33 43 0 0 chr13 38668143 38668190 -81076708 + AT_rich Low_complexity Low_complexity 1 47 0 293 301 9 26 chr13 38668390 38668503 -81076395 - MIR SINE MIR -49 159 48 1219 160 62 4 chr13 38669752 38669996 -81074902 - L1MB1 LINE L1 -1 6167 5910 3181 188 20 4 chr13 38669998 38670684 -81074214 + L1 LINE L1 4448 5144 -1002 13767 197 27 43 chr13 38670937 38674107 -81070791 - L1MA5 LINE L1 -4 7358 4336 1475 197 38 4 chr13 38674107 38674371 -81070527 - AluJo SINE Alu -39 273 1 13767 197 27 43 chr13 38674371 38675896 -81069002 - L1MA5 LINE L1 -3026 4336 2789 2031 225 11 17 chr13 38675883 38676404 -81068494 - L1MA5 LINE L1 -4915 2294 1777 * 1814 262 35 53 chr13 38676439 38677277 -81067621 - L1MA5 LINE L1 -6409 800 1 24 0 0 0 chr13 38677938 38677962 -81066936 + AT_rich Low_complexity Low_complexity 1 24 0 2012 75 3 98 chr13 38678142 38678446 -81066452 + AluY SINE Alu 1 272 -39 180 0 0 0 chr13 38678446 38678466 -81066432 + (CA)n Simple_repeat Simple_repeat 1 20 0 2012 75 3 98 chr13 38678466 38678496 -81066402 + AluY SINE Alu 272 303 -8 448 261 73 0 chr13 38679473 38679638 -81065260 - HAL1 LINE L1 -353 2154 1978 2375 271 90 28 chr13 38679642 38680785 -81064113 - HAL1 LINE L1 -1245 1262 49 521 258 48 0 chr13 38680864 38680988 -81063910 + MER91B DNA MER1_type 1 130 -60 236 323 32 21 chr13 38681005 38681098 -81063800 + MER91B DNA MER1_type 90 183 -7 922 136 4 140 chr13 38682243 38682471 -81062427 + L1PA16 LINE L1 5961 6157 -9 6854 62 1 0 chr13 38682641 38683511 -81061387 + L1PA6 LINE L1 5282 6152 -2 606 275 130 5 chr13 38684070 38684270 -81060628 + MIR SINE MIR 14 238 -24 22 56 0 0 chr13 38684388 38684424 -81060474 + AT_rich Low_complexity Low_complexity 1 36 0 2311 109 0 0 chr13 38684432 38684736 -81060162 + AluSq SINE Alu 1 304 -9 230 250 40 81 chr13 38685166 38685290 -81059608 + HAL1b LINE L1 589 707 -641 404 315 149 41 chr13 38685469 38685859 -81059039 + MLT1L LTR MaLR 41 472 -143 385 321 86 45 chr13 38685873 38686116 -81058782 + L1M4 LINE L1 2787 3039 -3107 4536 35 0 0 chr13 38686461 38686998 -81057900 + L1PA4 LINE L1 5611 6147 -8 400 257 75 35 chr13 38687141 38687367 -81057531 + L1ME4a LINE L1 5664 5898 -223 405 0 0 0 chr13 38687684 38687729 -81057169 + (TG)n Simple_repeat Simple_repeat 2 46 0 2399 66 7 0 chr13 38688372 38688661 -81056237 - AluYa5 SINE Alu -7 304 14 2328 87 0 0 chr13 38689840 38690127 -81054771 + AluSc SINE Alu 1 287 -22 287 313 64 21 chr13 38690834 38690982 -81053916 - MIR SINE MIR -63 145 2 233 168 9 224 chr13 38691105 38691212 -81053686 - MIR SINE MIR -1 261 178 255 271 57 41 chr13 38691411 38691533 -81053365 - MIR SINE MIR -137 125 2 225 294 55 84 chr13 38692702 38692977 -81051921 - MLT1L LTR MaLR -182 433 167 1261 178 47 34 chr13 38693627 38693947 -81050951 + MER33 DNA MER1_type 1 324 0 211 194 0 0 chr13 38694119 38694155 -81050743 + (ATG)n Simple_repeat Simple_repeat 3 38 0 12370 231 20 21 chr13 38695785 38700012 -81044886 + L1PA15 LINE L1 1081 5309 -1488 5769 98 39 3 chr13 38700042 38701528 -81043370 + L1PA15 LINE L1 5280 6811 -5 237 232 0 18 chr13 38701918 38701974 -81042924 + G-rich Low_complexity Low_complexity 3 57 0 217 347 174 0 chr13 38705336 38705434 -81039464 + L2 LINE L2 3150 3264 -8 2107 129 10 0 chr13 38705695 38706004 -81038894 - AluSx SINE Alu 0 312 1 509 311 0 0 chr13 38707333 38707455 -81037443 - L2 LINE L2 -1 3271 3150 809 197 111 5 chr13 38707462 38707660 -81037238 - MER58A DNA MER1_type -5 219 1 445 343 106 35 chr13 38707852 38708278 -81036620 - L2 LINE L2 -337 2977 2522 295 21 64 0 chr13 38709248 38709295 -81035603 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6286 23 8 10 chr13 38709295 38710083 -81034815 - L1PA3 LINE L1 -16 6139 5354 22 56 0 0 chr13 38711343 38711379 -81033519 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr13 38711578 38711598 -81033300 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1123 256 34 21 chr13 38711849 38712267 -81032631 - Charlie7 DNA MER1_type -461 2151 1729 571 261 40 27 chr13 38712271 38712493 -81032405 - Charlie7 DNA MER1_type -2091 521 297 3329 94 13 0 chr13 38712754 38713213 -81031685 - L1PA11 LINE L1 0 6174 5710 294 233 0 68 chr13 38714505 38714608 -81030290 - MIR SINE MIR -56 206 111 1840 135 40 4 chr13 38714626 38714951 -81029947 - AluSx SINE Alu 0 335 1 1066 205 68 34 chr13 38715346 38715693 -81029205 - MSTD LTR MaLR 0 396 1 1421 217 98 61 chr13 38715695 38716220 -81028678 + MLT1F1 LTR MaLR 25 567 0 199 185 358 0 chr13 38716576 38716657 -81028241 + MIR SINE MIR 117 226 -36 260 231 0 0 chr13 38716675 38716727 -81028171 - MIR SINE MIR -60 148 97 359 185 0 0 chr13 38717867 38717932 -81026966 - U4 snRNA snRNA -80 65 1 325 343 42 30 chr13 38718130 38718366 -81026532 + L2 LINE L2 2518 2756 -558 532 278 64 71 chr13 38718615 38718910 -81025988 + L2 LINE L2 3021 3313 0 262 379 85 26 chr13 38719243 38719515 -81025383 + L2 LINE L2 2981 3268 -4 1144 70 6 0 chr13 38720455 38720611 -81024287 + L1PA13 LINE L1 5564 5720 -454 479 93 0 103 chr13 38720611 38720716 -81024182 + L1PA13 LINE L1 6064 6159 -4 808 320 128 43 chr13 38722258 38723020 -81021878 + L2 LINE L2 2329 3173 -99 1622 171 45 7 chr13 38723020 38723312 -81021586 + AluJb SINE Alu 1 303 -9 808 320 128 43 chr13 38723312 38723422 -81021476 + L2 LINE L2 3173 3272 0 219 204 0 0 chr13 38724206 38724255 -81020643 + CT-rich Low_complexity Low_complexity 4 52 0 200 233 0 0 chr13 38724257 38724300 -81020598 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 251 320 21 31 chr13 38724315 38724412 -81020486 - L2 LINE L2 -50 3263 3168 227 368 26 0 chr13 38724535 38724611 -81020287 - L2 LINE L2 -204 3068 2991 260 67 0 67 chr13 38724853 38724913 -81019985 + (CA)n Simple_repeat Simple_repeat 2 57 0 279 0 0 0 chr13 38725342 38725373 -81019525 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 322 308 83 30 chr13 38727662 38727831 -81017067 + MIR SINE MIR 56 233 -29 1546 220 37 135 chr13 38728216 38729237 -81015661 - L1MC5 LINE L1 -423 7818 6898 24 53 0 0 chr13 38729559 38729597 -81015301 + AT_rich Low_complexity Low_complexity 1 38 0 1334 247 146 2 chr13 38729765 38730243 -81014655 - L1MC5 LINE L1 -1879 6209 5663 437 309 80 41 chr13 38730506 38731094 -81013804 - L1MC5 LINE L1 -1094 5332 4722 291 284 82 48 chr13 38731097 38731575 -81013323 - L1MC5 LINE L1 -5034 1392 899 550 231 81 6 chr13 38731849 38732009 -81012889 - MLT1D LTR MaLR 0 505 334 537 190 32 38 chr13 38732043 38732201 -81012697 + MER53 DNA DNA 28 184 -5 * 1329 211 12 36 chr13 38732184 38732520 -81012378 - MLT1D LTR MaLR -177 328 1 796 183 56 17 chr13 38732533 38732713 -81012185 + MER53 DNA DNA 1 187 -2 3160 133 2 4 chr13 38734310 38734827 -81010071 + L1MA5A LINE L1 5508 6023 -274 1274 122 39 24 chr13 38734851 38734935 -81009963 + L1MC3 LINE L1 7527 7608 -177 2052 131 3 7 chr13 38734935 38735269 -81009629 + AluSx SINE Alu 1 333 0 1274 122 39 24 chr13 38735269 38735437 -81009461 + L1MC3 LINE L1 7608 7784 -1 2037 129 0 3 chr13 38735859 38736145 -81008753 - AluSx SINE Alu -15 297 13 385 258 18 60 chr13 38736201 38736368 -81008530 - L1MC5 LINE L1 -50 7911 7752 226 307 166 57 chr13 38736393 38736676 -81008222 - L2 LINE L2 -15 3298 2985 7636 15 0 0 chr13 38736897 38738140 -81006758 - L1HS LINE L1 0 6155 4913 3454 56 6 0 chr13 38740331 38740799 -81004099 - L1P LINE L1 -3813 2333 1863 2470 98 3 3 chr13 38740796 38741172 -81003726 - L1P LINE L1 -4759 1387 1012 * 7223 45 8 2 chr13 38741172 38742171 -81002727 + L1PA5 LINE L1 5146 6150 -4 2272 109 3 3 chr13 38742659 38742972 -81001926 + AluSq SINE Alu 1 313 0 1988 148 26 3 chr13 38743918 38744223 -81000675 + AluSx SINE Alu 1 312 0 540 248 86 40 chr13 38744418 38744553 -81000345 + MIR SINE MIR 53 201 -61 2444 100 0 0 chr13 38744553 38744863 -81000035 + AluSg SINE Alu 1 310 0 540 248 86 40 chr13 38744863 38744925 -80999973 + MIR SINE MIR 201 259 -3 250 135 0 96 chr13 38748196 38748248 -80996650 + L2 LINE L2 2709 2755 -559 309 325 60 13 chr13 38748338 38748489 -80996409 + MIR SINE MIR 48 205 -57 360 304 123 57 chr13 38748568 38748973 -80995925 - L2 LINE L2 -50 3263 2832 535 210 81 16 chr13 38749068 38749192 -80995706 - FLAM_C SINE Alu 0 133 2 2063 164 125 74 chr13 38749919 38749956 -80994942 - MLT2B2 LTR ERVL 0 515 481 432 0 0 0 chr13 38749956 38750004 -80994894 + (GA)n Simple_repeat Simple_repeat 1 48 0 2063 164 125 74 chr13 38750004 38750454 -80994444 - MLT2B2 LTR ERVL -34 481 3 2979 118 7 0 chr13 38750956 38751381 -80993517 - MSTA LTR MaLR 0 428 1 203 383 78 8 chr13 38751714 38751842 -80993056 - L2 LINE L2 -43 3229 3093 243 140 0 0 chr13 38753615 38753665 -80991233 + (CA)n Simple_repeat Simple_repeat 2 51 0 32 43 0 0 chr13 38754869 38754915 -80989983 + AT_rich Low_complexity Low_complexity 1 46 0 10009 25 4 1 chr13 38754918 38756878 -80988020 - L1PA3 LINE L1 0 6155 4195 296 227 0 0 chr13 38756972 38757038 -80987860 + MER113 DNA MER1_type? 456 521 0 1051 247 79 25 chr13 38757428 38757955 -80986943 + MLT2F LTR ERVL 1 601 -62 727 189 0 40 chr13 38757959 38758107 -80986791 + Tigger2 DNA MER2_type 2577 2718 0 13962 131 6 4 chr13 38758247 38760617 -80984281 - L1P LINE L1 -1038 5108 2735 1415 215 16 0 chr13 38760616 38760932 -80983966 + L1ME1 LINE L1 5840 6160 -6 * 31 112 0 0 chr13 38761544 38761687 -80983211 + AT_rich Low_complexity Low_complexity 1 143 0 383 219 18 6 chr13 38761703 38761867 -80983031 + (TA)n Simple_repeat Simple_repeat 1 166 0 228 214 39 48 chr13 38761870 38761973 -80982925 + (TATATG)n Simple_repeat Simple_repeat 5 106 0 342 253 1 94 chr13 38761993 38762159 -80982739 + L1MC4 LINE L1 1988 7019 -1303 2153 136 7 0 chr13 38763137 38763446 -80981452 - AluSx SINE Alu -1 311 1 463 317 17 17 chr13 38763558 38763738 -80981160 - MIR3 SINE MIR -11 197 18 247 366 41 41 chr13 38763844 38764016 -80980882 + MER5A DNA MER1_type 18 189 0 373 299 174 11 chr13 38764046 38764230 -80980668 + MIR SINE MIR 43 256 -6 21 0 0 0 chr13 38764347 38764368 -80980530 + AT_rich Low_complexity Low_complexity 1 21 0 1381 225 18 3 chr13 38764633 38764967 -80979931 - L1ME2 LINE L1 -9 6155 5817 2480 38 0 0 chr13 38765059 38765351 -80979547 - AluY SINE Alu -19 292 1 1282 233 37 43 chr13 38765785 38766245 -80978653 + Charlie7 DNA MER1_type 265 721 -1891 607 290 207 16 chr13 38767911 38768381 -80976517 - L2 LINE L2 -5 3308 2750 1230 189 60 98 chr13 38768394 38768791 -80976107 - MLT1B LTR MaLR -8 382 1 1227 264 338 8 chr13 38768792 38769564 -80975334 - L2 LINE L2 -561 2753 1727 220 222 141 40 chr13 38769650 38769749 -80975149 + MIR SINE MIR 97 205 -57 392 296 28 0 chr13 38770011 38770119 -80974779 + MIR SINE MIR 73 183 -79 1698 222 18 22 chr13 38771267 38771843 -80973055 + LTR40a LTR ERVL 1 519 0 984 172 0 0 chr13 38771874 38772031 -80972867 + FAM SINE Alu 6 162 -23 2037 141 0 0 chr13 38772046 38772336 -80972562 + AluSx SINE Alu 1 290 -22 543 43 0 0 chr13 38772411 38772481 -80972417 + (TG)n Simple_repeat Simple_repeat 1 70 0 390 265 68 8 chr13 38772589 38772706 -80972192 + L2 LINE L2 3187 3310 -3 201 342 44 61 chr13 38772912 38773026 -80971872 + MIR3 SINE MIR 95 206 -2 2400 101 0 0 chr13 38773424 38773732 -80971166 + AluSx SINE Alu 1 308 -4 2311 127 12 0 chr13 38775985 38776307 -80968591 + L1PA16 LINE L1 5832 6157 -9 207 0 0 0 chr13 38777020 38777043 -80967855 + (TG)n Simple_repeat Simple_repeat 2 24 0 294 255 21 11 chr13 38777073 38777167 -80967731 + (TA)n Simple_repeat Simple_repeat 2 96 0 2171 128 3 0 chr13 38778268 38778573 -80966325 + AluSx SINE Alu 1 306 -6 686 227 29 29 chr13 38780549 38780754 -80964144 + MER8 DNA MER2_type 20 345 0 253 170 21 0 chr13 38781218 38781265 -80963633 - L2 LINE L2 -5 3267 3220 2150 69 0 0 chr13 38782215 38782475 -80962423 + AluSx SINE Alu 32 291 -21 1712 238 83 65 chr13 38782488 38782932 -80961966 + MER97c DNA MER1_type? 45 479 -611 1742 171 53 73 chr13 38782932 38783330 -80961568 - MLT1B LTR MaLR 0 390 1 1712 238 83 65 chr13 38783330 38783356 -80961542 + MER97c DNA MER1_type? 479 503 -587 2199 130 0 0 chr13 38783356 38783663 -80961235 + AluSx SINE Alu 1 307 -5 1712 238 83 65 chr13 38783663 38783872 -80961026 + MER97c DNA MER1_type? 503 707 -383 2115 121 30 0 chr13 38783872 38784169 -80960729 + AluSc SINE Alu 1 306 -3 1712 238 83 65 chr13 38784169 38784238 -80960660 + MER97c DNA MER1_type? 707 773 -317 526 163 0 0 chr13 38784238 38784318 -80960580 + MADE1 DNA Mariner 1 80 0 1712 238 83 65 chr13 38784318 38784387 -80960511 + MER97c DNA MER1_type? 773 880 -210 402 344 158 4 chr13 38784740 38785019 -80959879 - MER115 DNA AcHobo -287 406 85 2168 128 0 0 chr13 38785297 38785595 -80959303 - AluSx SINE Alu -14 298 1 243 0 0 0 chr13 38786791 38786818 -80958080 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5031 161 17 19 chr13 38786819 38788533 -80956365 - L1PA16 LINE L1 -177 5989 4273 182 298 140 89 chr13 38788987 38789279 -80955619 - L2 LINE L2 -1022 2292 1986 27 0 0 0 chr13 38789297 38789324 -80955574 + AT_rich Low_complexity Low_complexity 1 27 0 892 206 0 0 chr13 38789324 38789484 -80955414 + AluJo SINE Alu 1 160 -152 1869 53 109 0 chr13 38791401 38791648 -80953250 + LTR12 LTR ERV1 1 274 -440 297 303 10 0 chr13 38791652 38791751 -80953147 + LTR30 LTR ERV1 544 643 -79 1038 159 176 2 chr13 38791751 38791977 -80952921 + LTR12 LTR ERV1 73 614 -100 462 287 69 21 chr13 38792511 38792699 -80952199 + L1ME4a LINE L1 5669 5865 -256 206 234 4 34 chr13 38793745 38793811 -80951087 - MIR SINE MIR -69 139 74 404 331 18 12 chr13 38794858 38795021 -80949877 + MIR SINE MIR 73 236 -26 439 221 213 0 chr13 38795033 38795155 -80949743 - MIR SINE MIR 0 262 115 690 222 34 108 chr13 38795693 38795964 -80948934 + L1MA9 LINE L1 6039 6289 -2 * 1489 269 191 20 chr13 38795962 38797017 -80947881 - L1M4 LINE L1 -2672 3474 2239 300 288 128 0 chr13 38797279 38797404 -80947494 - L1MC4 LINE L1 -1 8041 7901 193 286 119 12 chr13 38797647 38797731 -80947167 + MER5A DNA MER1_type 54 146 -43 645 306 31 9 chr13 38797764 38797986 -80946912 - MIR SINE MIR -12 250 24 3830 172 87 56 chr13 38797998 38798823 -80946075 - MER21B LTR ERV1 -12 851 1 250 202 167 35 chr13 38799323 38799437 -80945461 + L2 LINE L2 2678 2806 -508 2004 113 0 55 chr13 38799813 38800122 -80944776 - AluSq SINE Alu -21 292 1 21 71 0 0 chr13 38800266 38800308 -80944590 + AT_rich Low_complexity Low_complexity 1 42 0 191 243 0 0 chr13 38800498 38800535 -80944363 - MER5A DNA MER1_type -102 87 51 215 227 0 0 chr13 38800575 38800619 -80944279 + MER5A DNA MER1_type 146 189 0 320 317 116 31 chr13 38801318 38801542 -80943356 - MIR SINE MIR 0 262 20 * 482 271 0 16 chr13 38801531 38801653 -80943245 + L2 LINE L2 3175 3294 -19 441 243 40 35 chr13 38801765 38801991 -80942907 + L1MEc LINE L1 2078 2304 -4092 365 271 57 57 chr13 38802052 38802192 -80942706 - MIR3 SINE MIR -67 141 2 186 339 54 54 chr13 38802263 38802744 -80942154 - L2 LINE L2 -1977 1337 857 458 276 56 56 chr13 38804354 38804550 -80940348 + MLT1J LTR MaLR 3 198 -313 780 259 137 8 chr13 38805837 38806100 -80938798 + MLT1J2 LTR MaLR 117 413 -37 568 293 6 6 chr13 38807137 38807301 -80937597 + MIR SINE MIR 33 196 -66 214 245 57 0 chr13 38808083 38808136 -80936762 + L2 LINE L2 3177 3232 -40 212 152 0 0 chr13 38808210 38808243 -80936655 + L2 LINE L2 3240 3272 0 2365 96 3 0 chr13 38808559 38808861 -80936037 + AluSp SINE Alu 1 303 -10 613 270 52 56 chr13 38809319 38809552 -80935346 - MER102a DNA MER1_type -7 323 92 748 249 138 9 chr13 38812804 38813029 -80931869 - MIR SINE MIR -1 261 8 677 289 80 17 chr13 38813175 38813414 -80931484 + MIR SINE MIR 9 262 0 1050 193 78 21 chr13 38816026 38816066 -80928832 - MLT2B3 LTR ERVL 0 554 518 767 49 37 25 chr13 38816066 38816229 -80928669 + (TA)n Simple_repeat Simple_repeat 1 165 0 198 0 0 0 chr13 38816238 38816260 -80928638 + (GA)n Simple_repeat Simple_repeat 2 23 0 1050 193 78 21 chr13 38816260 38816521 -80928377 - MLT2B3 LTR ERVL -43 511 229 1927 130 19 16 chr13 38816522 38816648 -80928250 + AluSq SINE Alu 1 125 -188 189 0 0 0 chr13 38816648 38816669 -80928229 + (CA)n Simple_repeat Simple_repeat 2 22 0 1927 130 19 16 chr13 38816669 38816850 -80928048 + AluSq SINE Alu 125 309 -4 513 128 29 0 chr13 38816850 38816952 -80927946 + GA-rich Low_complexity Low_complexity 1 105 0 1653 116 39 4 chr13 38816953 38817212 -80927686 - MLT2A2 LTR ERVL -185 268 1 269 247 24 35 chr13 38817262 38817347 -80927551 - L2 LINE L2 -1 3271 3188 1429 183 66 101 chr13 38817554 38817724 -80927174 + MLT1A1 LTR MaLR 1 175 -190 278 26 26 0 chr13 38817724 38817763 -80927135 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1429 183 66 101 chr13 38817763 38817969 -80926929 + MLT1A1 LTR MaLR 175 364 -1 189 74 0 0 chr13 38818337 38818364 -80926534 + (TA)n Simple_repeat Simple_repeat 2 28 0 335 285 162 54 chr13 38818623 38819012 -80925886 + L2 LINE L2 2842 3272 0 613 265 40 20 chr13 38819089 38819289 -80925609 - MIR SINE MIR -17 245 42 1844 87 0 4 chr13 38819386 38819627 -80925271 - AluSc SINE Alu -1 308 69 431 367 65 4 chr13 38820895 38821124 -80923774 + MIR SINE MIR 20 262 0 211 293 173 0 chr13 38821390 38821465 -80923433 + MIR SINE MIR 30 117 -91 279 337 0 12 chr13 38821482 38821568 -80923330 + MIR SINE MIR 11 95 -167 727 259 22 0 chr13 38821583 38821768 -80923130 - MIR SINE MIR -6 256 68 207 333 126 0 chr13 38821885 38821972 -80922926 - L2 LINE L2 -20 3252 3155 224 267 17 0 chr13 38822398 38822458 -80922440 - L2 LINE L2 -2 3311 3251 333 222 8 64 chr13 38822737 38822848 -80922050 + MIR SINE MIR 46 154 -66 231 88 0 0 chr13 38823692 38823726 -80921172 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1660 91 5 0 chr13 38823812 38824022 -80920876 - AluSq SINE Alu -19 294 84 1309 85 17 0 chr13 38824455 38824631 -80920267 + AluSg/x SINE Alu 127 305 -5 182 377 123 0 chr13 38824971 38825125 -80919773 - L3b LINE CR1 -287 1296 1124 193 319 0 0 chr13 38825501 38825548 -80919350 + MIR SINE MIR 29 75 -133 470 298 162 5 chr13 38826450 38826648 -80918250 - L3 LINE CR1 -1 1576 1348 193 290 16 0 chr13 38826871 38826933 -80917965 + L2 LINE L2 2596 2658 -656 998 139 0 6 chr13 38827483 38827514 -80917384 + (GGAA)n Simple_repeat Simple_repeat 1 209 0 998 139 0 6 chr13 38827514 38827694 -80917204 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 225 309 96 0 chr13 38827822 38827916 -80916982 - L3 LINE CR1 -356 1221 1119 204 200 17 50 chr13 38828423 38828483 -80916415 + GA-rich Low_complexity Low_complexity 6 63 0 187 353 78 33 chr13 38828978 38829131 -80915767 - L3 LINE CR1 -1166 411 252 22 35 0 0 chr13 38829673 38829702 -80915196 + AT_rich Low_complexity Low_complexity 1 29 0 229 330 68 17 chr13 38829702 38829820 -80915078 - MIR SINE MIR -104 158 35 2006 243 36 4 chr13 38831210 38831709 -80913189 + L1ME1 LINE L1 5647 6161 -5 2416 76 0 3 chr13 38831793 38832094 -80912804 + AluY SINE Alu 1 300 -11 186 43 0 0 chr13 38832671 38832694 -80912204 + (TGG)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 38832804 38832827 -80912071 + AT_rich Low_complexity Low_complexity 1 23 0 217 318 62 23 chr13 38834811 38834940 -80909958 - L2 LINE L2 0 3313 3180 439 202 56 22 chr13 38836138 38836227 -80908671 - MER81 DNA DNA -21 93 2 813 226 24 0 chr13 38836548 38836712 -80908186 + MER5A DNA MER1_type 21 188 -1 2772 26 3 0 chr13 38836823 38837133 -80907765 - AluY SINE Alu 0 311 1 215 321 48 0 chr13 38838767 38838851 -80906047 - L2 LINE L2 0 3272 3185 938 196 88 0 chr13 38838880 38839074 -80905824 - MIR SINE MIR -49 213 3 2327 111 0 0 chr13 38840450 38840757 -80904141 - AluSx SINE Alu -5 307 1 1395 189 33 49 chr13 38840964 38841270 -80903628 - AluJo SINE Alu -6 306 6 541 331 116 52 chr13 38842002 38842666 -80902232 + L2 LINE L2 1610 2371 -943 1953 131 0 4 chr13 38842666 38842964 -80901934 - AluSx SINE Alu 0 307 11 541 331 116 52 chr13 38842964 38843366 -80901532 + L2 LINE L2 2371 2746 -568 216 97 0 0 chr13 38843472 38843503 -80901395 + (CAT)n Simple_repeat Simple_repeat 3 33 0 501 273 52 6 chr13 38843508 38843680 -80901218 - MIR SINE MIR -10 252 73 648 320 40 0 chr13 38845132 38845360 -80899538 - MIR SINE MIR 0 262 26 2213 108 3 7 chr13 38845437 38845765 -80899133 - AluSq SINE Alu 0 313 1 686 270 25 0 chr13 38845768 38845964 -80898934 - MIR SINE MIR -49 213 13 510 326 38 13 chr13 38846908 38847144 -80897754 + MIR SINE MIR 21 262 0 296 327 0 0 chr13 38848539 38848640 -80896258 - MIR SINE MIR -130 132 32 262 320 0 19 chr13 38849500 38849603 -80895295 - MIR SINE MIR -130 132 32 1219 242 81 73 chr13 38849851 38850343 -80894555 + MER21B LTR ERV1 100 595 -268 710 61 0 10 chr13 38851037 38851135 -80893763 + L1PB1 LINE L1 6054 6150 -1 27 49 0 0 chr13 38851135 38851176 -80893722 + AT_rich Low_complexity Low_complexity 1 41 0 2005 133 3 11 chr13 38851177 38851494 -80893404 - AluSx SINE Alu 0 315 1 190 241 0 19 chr13 38853944 38853998 -80890900 - MER5B DNA MER1_type -124 54 2 252 0 0 0 chr13 38854018 38854046 -80890852 + (CA)n Simple_repeat Simple_repeat 2 29 0 246 309 100 0 chr13 38854156 38854266 -80890632 + MIR3 SINE MIR 64 184 -24 537 295 62 48 chr13 38855927 38856263 -80888635 - MER102b DNA MER1_type 0 341 1 1034 99 35 0 chr13 38858037 38858178 -80886720 - AluSp/q SINE Alu -7 306 161 841 156 96 0 chr13 38858652 38858819 -80886079 - MER5A DNA MER1_type -1 188 6 21 36 0 0 chr13 38859165 38859193 -80885705 + AT_rich Low_complexity Low_complexity 1 28 0 465 244 51 21 chr13 38859527 38859717 -80885181 + MIR SINE MIR 25 218 -44 256 269 11 75 chr13 38862540 38862633 -80882265 + MER5A DNA MER1_type 87 173 -16 327 293 41 0 chr13 38863587 38863710 -80881188 - L2 LINE L2 -6 3307 3180 243 283 0 0 chr13 38864028 38864081 -80880817 - L2 LINE L2 -680 2634 2582 312 309 146 28 chr13 38865335 38865513 -80879385 + MIR3 SINE MIR 3 201 -7 354 311 82 20 chr13 38867015 38867211 -80877687 + L2 LINE L2 3075 3282 -31 1569 192 0 21 chr13 38868590 38868876 -80876022 + AluJb SINE Alu 3 282 -30 24 0 0 0 chr13 38868885 38868909 -80875989 + AT_rich Low_complexity Low_complexity 1 24 0 1766 217 125 53 chr13 38870476 38870988 -80873910 - MLT1H LTR MaLR 0 549 1 362 202 48 0 chr13 38873009 38873093 -80871805 - Charlie8 DNA MER1_type -2259 158 71 269 276 41 41 chr13 38873587 38873710 -80871188 - MIR3 SINE MIR -54 154 32 456 311 144 0 chr13 38873964 38874144 -80870754 - MIR SINE MIR -29 233 28 333 228 138 83 chr13 38875979 38876124 -80868774 + MER5A DNA MER1_type 37 189 0 2012 154 0 10 chr13 38876575 38876880 -80868018 - AluJb SINE Alu 0 312 11 549 255 50 6 chr13 38877058 38877219 -80867679 + MER5B DNA MER1_type 9 176 -2 870 183 5 42 chr13 38877973 38878164 -80866734 + MER5A DNA MER1_type 5 188 -1 190 259 69 17 chr13 38878782 38878840 -80866058 - MIR SINE MIR -127 81 21 4331 108 21 3 chr13 38879812 38880435 -80864463 - MER51A LTR ERV1 0 634 1 453 270 36 0 chr13 38880860 38880997 -80863901 - MIR SINE MIR 0 262 121 26 0 0 0 chr13 38882062 38882088 -80862810 + AT_rich Low_complexity Low_complexity 1 26 0 1701 162 30 18 chr13 38882218 38882552 -80862346 - L1MB8 LINE L1 -1 6177 5840 28 0 0 0 chr13 38882635 38882663 -80862235 + AT_rich Low_complexity Low_complexity 1 28 0 193 284 241 12 chr13 38882665 38882827 -80862071 - MIR SINE MIR -32 230 32 608 226 77 52 chr13 38883041 38883289 -80861609 + MIR SINE MIR 9 262 0 2457 90 0 3 chr13 38883652 38883963 -80860935 + AluSg SINE Alu 1 310 0 271 331 52 15 chr13 38884329 38884465 -80860433 + L1ME LINE L1 5684 5824 -297 2233 114 58 73 chr13 38885023 38885436 -80859462 - MLT2D LTR ERVL -6 408 2 495 288 118 26 chr13 38885443 38885749 -80859149 - MER93a LTR ERV1 -11 391 58 790 261 38 93 chr13 38885846 38886137 -80858761 - MLT1E LTR MaLR -88 505 231 2004 128 24 0 chr13 38886449 38886738 -80858160 - AluSx SINE Alu -16 296 1 2119 156 30 0 chr13 38886846 38887180 -80857718 + MSTB LTR MaLR 1 344 -82 330 338 105 18 chr13 38887725 38888059 -80856839 + L2 LINE L2 2920 3282 -31 249 33 0 0 chr13 38888066 38888096 -80856802 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 237 255 32 11 chr13 38888792 38888886 -80856012 + L2 LINE L2 2934 3029 -243 224 283 44 62 chr13 38889852 38889965 -80854933 + MIR SINE MIR 46 156 -106 270 170 19 0 chr13 38891170 38891223 -80853675 + MER116 DNA Mariner 22 75 -5 254 239 43 33 chr13 38891896 38891988 -80852910 - L3 LINE CR1 -62 1515 1423 489 297 29 42 chr13 38892045 38892284 -80852614 + MIR SINE MIR 15 250 -12 268 247 118 12 chr13 38892318 38892403 -80852495 - L3 LINE CR1 -255 1322 1229 2665 30 0 0 chr13 38892841 38893138 -80851760 + AluY SINE Alu 1 297 -14 745 256 256 10 chr13 38893988 38894220 -80850678 + L2 LINE L2 2805 2979 -334 180 0 0 0 chr13 38894220 38894240 -80850658 + (TC)n Simple_repeat Simple_repeat 1 20 0 745 256 256 10 chr13 38894240 38894414 -80850484 + L2 LINE L2 2979 3311 -2 275 244 39 0 chr13 38895097 38895175 -80849723 + GA-rich Low_complexity Low_complexity 1 81 0 566 322 10 5 chr13 38895283 38895491 -80849407 + MIR SINE MIR 30 238 -24 221 180 20 0 chr13 38895494 38895544 -80849354 + (CAT)n Simple_repeat Simple_repeat 1 51 0 197 293 67 0 chr13 38895554 38895629 -80849269 - MIR SINE MIR -42 220 141 198 260 20 0 chr13 38895879 38895929 -80848969 + MIR SINE MIR 21 71 -137 498 276 10 36 chr13 38896629 38896825 -80848073 + MIR SINE MIR 44 234 -28 632 297 4 48 chr13 38898784 38899033 -80845865 + MIR SINE MIR 15 252 -10 1660 59 0 18 chr13 38899038 38899257 -80845641 + L1PA8 LINE L1 5957 6171 -1 2351 105 0 7 chr13 38901814 38902119 -80842779 - AluSx SINE Alu -9 303 1 404 226 135 30 chr13 38902667 38902800 -80842098 - MLT1K LTR MaLR -254 334 188 1817 245 89 35 chr13 38902818 38903357 -80841541 - MLT1E2 LTR MaLR -8 618 51 262 339 87 0 chr13 38904017 38904144 -80840754 + MIR3 SINE MIR 20 157 -51 1188 289 51 12 chr13 38904717 38905126 -80839772 - LTR16A LTR ERVL 0 450 26 1986 161 70 21 chr13 38905472 38905844 -80839054 - MLT1B LTR MaLR 0 390 1 189 0 0 0 chr13 38905956 38905977 -80838921 + (T)n Simple_repeat Simple_repeat 1 21 0 501 110 0 128 chr13 38906017 38906126 -80838772 - L1PA10 LINE L1 0 6168 6074 250 209 108 39 chr13 38906147 38906276 -80838622 - L1ME4a LINE L1 -40 6081 5944 218 57 57 0 chr13 38906737 38906772 -80838126 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 314 183 0 12 chr13 38907521 38907603 -80837295 + GA-rich Low_complexity Low_complexity 4 84 0 227 229 0 16 chr13 38907604 38907665 -80837233 - LTR66 LTR ERVL -152 458 399 608 186 87 0 chr13 38908471 38908632 -80836266 + MER96B DNA MER1_type? 1 175 -242 581 138 0 0 chr13 38908773 38908867 -80836031 + L1MA8 LINE L1 6186 6279 -12 2258 237 78 95 chr13 38910305 38910895 -80834003 - MLT1G LTR MaLR -15 575 1 2198 108 3 10 chr13 38911555 38911852 -80833046 + AluSx SINE Alu 1 295 -17 697 275 90 9 chr13 38912136 38912369 -80832529 - MIR SINE MIR -5 257 6 711 163 188 6 chr13 38912824 38912984 -80831914 - MER53 DNA DNA 0 189 1 313 176 15 0 chr13 38913253 38913321 -80831577 - L1MC4 LINE L1 0 8042 7974 699 257 40 14 chr13 38913524 38913746 -80831152 - L1MC4 LINE L1 -203 7839 7612 571 309 100 0 chr13 38913765 38913985 -80830913 - MIR SINE MIR -20 242 1 205 339 104 42 chr13 38914166 38914358 -80830540 + MIR SINE MIR 47 250 -12 1772 197 67 6 chr13 38914769 38915125 -80829773 + MLT1B LTR MaLR 1 378 -12 1543 99 49 0 chr13 38915178 38915356 -80829542 + MLT2A2 LTR ERVL 220 413 -40 333 0 0 0 chr13 38915356 38915393 -80829505 + (TG)n Simple_repeat Simple_repeat 2 38 0 1543 99 49 0 chr13 38915393 38915437 -80829461 + MLT2A2 LTR ERVL 413 453 0 2135 128 0 0 chr13 38917055 38917345 -80827553 - AluSx SINE Alu -15 297 8 492 157 22 11 chr13 38919303 38919392 -80825506 - MER46A DNA MER2_type -97 139 50 320 323 60 42 chr13 38920125 38920342 -80824556 - MIR SINE MIR -24 238 18 287 296 40 59 chr13 38920390 38920542 -80824356 + MIR SINE MIR 39 187 -75 856 201 0 19 chr13 38920597 38920756 -80824142 - FRAM SINE Alu -7 159 4 528 251 113 88 chr13 38920886 38921329 -80823569 - MLT1L LTR MaLR 0 615 162 293 194 30 15 chr13 38921367 38921434 -80823464 - MLT1L LTR MaLR -543 72 5 261 282 73 16 chr13 38923001 38923125 -80821773 - MIR SINE MIR -46 216 86 1247 144 8 58 chr13 38924247 38924490 -80820408 - L1PA13 LINE L1 -7 6156 5926 258 252 189 0 chr13 38927727 38927838 -80817060 + L2 LINE L2 3182 3313 0 288 0 0 0 chr13 38928533 38928565 -80816333 + (TC)n Simple_repeat Simple_repeat 1 32 0 257 233 128 0 chr13 38928767 38928853 -80816045 + MER5A DNA MER1_type 10 106 -83 2242 116 0 10 chr13 38928947 38929258 -80815640 + AluSg SINE Alu 1 308 -2 359 275 38 33 chr13 38929626 38929836 -80815062 + MIR SINE MIR 17 232 -30 821 141 59 82 chr13 38930188 38930408 -80814490 + MER20 DNA MER1_type 1 215 -4 359 297 97 11 chr13 38930890 38931065 -80813833 + MLT1L LTR MaLR 368 557 -58 2027 97 0 4 chr13 38931251 38931508 -80813390 - AluSq SINE Alu -26 287 32 403 257 26 9 chr13 38932742 38932855 -80812043 + MIR SINE MIR 81 195 -67 516 271 103 23 chr13 38932873 38933087 -80811811 + MIR SINE MIR 2 232 -30 204 217 0 0 chr13 38933118 38933164 -80811734 + MIR SINE MIR 215 260 -2 1519 237 22 16 chr13 38933320 38933683 -80811215 - MLT1A2 LTR MaLR -5 369 5 22 0 0 0 chr13 38934879 38934901 -80809997 + AT_rich Low_complexity Low_complexity 1 22 0 330 328 8 22 chr13 38935988 38936122 -80808776 - MER5A DNA MER1_type 0 189 58 222 285 60 53 chr13 38936008 38936159 -80808739 + MER5A DNA MER1_type 31 182 -7 * 222 339 100 83 chr13 38936389 38936728 -80808170 - L2 LINE L2 -50 3222 2878 2014 163 12 15 chr13 38936759 38937102 -80807796 - MLT1A1 LTR MaLR 0 365 24 377 240 11 33 chr13 38938228 38938411 -80806487 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 237 236 0 0 chr13 38938443 38938498 -80806400 - MIR SINE MIR -112 150 96 934 244 40 4 chr13 38938930 38939180 -80805718 - MIR SINE MIR 0 262 4 180 0 0 0 chr13 38941719 38941739 -80803159 + (TTG)n Simple_repeat Simple_repeat 2 21 0 234 270 52 43 chr13 38942164 38942279 -80802619 - MIR3 SINE MIR -29 179 64 183 80 0 0 chr13 38942338 38942363 -80802535 + (CCCCCA)n Simple_repeat Simple_repeat 3 27 0 420 335 36 0 chr13 38946380 38946547 -80798351 + L3b LINE CR1 1264 1436 -147 222 167 24 0 chr13 38947690 38947732 -80797166 + (TA)n Simple_repeat Simple_repeat 1 43 0 1142 182 36 9 chr13 38949905 38950130 -80794768 + L1MC1 LINE L1 6101 6331 -2 1675 231 164 25 chr13 38950420 38950970 -80793928 - MLT1E2 LTR MaLR 0 626 1 192 255 189 20 chr13 38950970 38951123 -80793775 + L2 LINE L2 1828 2006 -1308 2172 117 3 0 chr13 38951440 38951738 -80793160 + AluSq SINE Alu 2 300 -13 1846 163 3 16 chr13 38952000 38952306 -80792592 + AluJo SINE Alu 1 302 -10 520 139 0 0 chr13 38952446 38952532 -80792366 + MER5A DNA MER1_type 20 105 -84 228 356 130 18 chr13 38952755 38953039 -80791859 + L2 LINE L2 2910 3225 -47 320 250 36 0 chr13 38953694 38953778 -80791120 + MIR SINE MIR 120 206 -56 2286 119 0 0 chr13 38954157 38954469 -80790429 - AluSx SINE Alu 0 312 1 2179 179 39 10 chr13 38955604 38956018 -80788880 + MSTB LTR MaLR 1 426 0 285 289 26 50 chr13 38956231 38956355 -80788543 - MIR SINE MIR -67 141 46 293 274 18 44 chr13 38956461 38956598 -80788300 - LTR33A LTR ERVL -2 521 411 241 311 48 0 chr13 38956856 38956959 -80787939 - LTR67 LTR ERVL -336 221 114 309 26 0 0 chr13 38957645 38957683 -80787215 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr13 38957692 38957730 -80787168 + AT_rich Low_complexity Low_complexity 1 38 0 531 353 92 11 chr13 38957756 38958104 -80786794 + L3 LINE CR1 1068 1443 -134 201 39 0 0 chr13 38959001 38959027 -80785871 + (TG)n Simple_repeat Simple_repeat 1 26 0 180 258 135 0 chr13 38960419 38960508 -80784390 + MIR SINE MIR 162 262 0 338 288 42 42 chr13 38960606 38960724 -80784174 + L2 LINE L2 3137 3254 -18 223 265 29 20 chr13 38960916 38961018 -80783880 + MER5A DNA MER1_type 85 187 -2 2513 77 0 0 chr13 38962443 38962754 -80782144 + AluY SINE Alu 1 311 0 273 186 246 36 chr13 38962971 38963138 -80781760 + L2 LINE L2 3107 3308 -5 1028 152 25 0 chr13 38964076 38964234 -80780664 - AluSg/x SINE Alu -15 297 136 2424 149 39 12 chr13 38964272 38964681 -80780217 - MSTB LTR MaLR 0 426 7 207 0 0 0 chr13 38964762 38964785 -80780113 + (CAA)n Simple_repeat Simple_repeat 2 24 0 218 236 56 0 chr13 38965065 38965137 -80779761 - L2 LINE L2 -215 3057 2982 201 286 51 41 chr13 38965152 38965250 -80779648 - L2 LINE L2 -49 3264 3166 194 333 106 8 chr13 38965989 38966112 -80778786 + L2 LINE L2 2681 2815 -499 512 249 30 6 chr13 38966157 38966322 -80778576 - L1M4 LINE L1 -775 5371 5203 329 306 171 14 chr13 38966868 38967084 -80777814 + MIR SINE MIR 13 262 0 522 173 0 0 chr13 38967299 38967403 -80777495 + (TCCA)n Simple_repeat Simple_repeat 2 105 0 317 250 54 45 chr13 38967403 38967515 -80777383 - L2 LINE L2 0 3272 3160 260 367 120 6 chr13 38967609 38967767 -80777131 + MIR3 SINE MIR 20 195 -13 267 291 53 76 chr13 38968468 38968770 -80776128 + L2 LINE L2 2943 3237 -35 523 296 23 6 chr13 38968798 38968970 -80775928 - MIR SINE MIR 0 262 88 368 206 0 0 chr13 38969148 38969216 -80775682 - AluJo SINE Alu -7 295 228 553 179 9 28 chr13 38969216 38969322 -80775576 - AluJo SINE Alu -160 152 49 180 135 0 0 chr13 38970308 38970345 -80774553 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 2172 181 21 65 chr13 38970418 38970944 -80773954 - MLT1D LTR MaLR -2 503 1 1414 245 52 46 chr13 38971502 38972004 -80772894 + MLT1D LTR MaLR 1 505 0 354 212 0 0 chr13 38972392 38972491 -80772407 + (CA)n Simple_repeat Simple_repeat 1 99 0 189 270 0 0 chr13 38972900 38972937 -80771961 - L2 LINE L2 -34 3279 3243 520 216 60 0 chr13 38973302 38973418 -80771480 - L1PB4 LINE L1 0 6156 6034 1279 301 93 21 chr13 38973423 38974240 -80770658 - L2 LINE L2 -1064 2250 1375 411 288 76 83 chr13 38974513 38974933 -80769965 + L1MEd LINE L1 176 592 -5613 337 289 79 5 chr13 38974986 38975040 -80769858 + L1MEd LINE L1 723 772 -5433 204 40 0 0 chr13 38975040 38975065 -80769833 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 337 289 79 5 chr13 38975065 38975200 -80769698 + L1MEd LINE L1 772 926 -5279 731 87 0 39 chr13 38975218 38975322 -80769576 + HY3 scRNA scRNA 1 100 -1 504 145 111 26 chr13 38975364 38975481 -80769417 + L1MB1 LINE L1 6042 6168 0 * 570 259 62 69 chr13 38975478 38975654 -80769244 + L1MEd LINE L1 935 1111 -5094 2178 113 3 0 chr13 38975654 38975959 -80768939 + AluSx SINE Alu 1 306 0 570 259 62 69 chr13 38975959 38976186 -80768712 + L1MEd LINE L1 1111 1336 -4869 443 285 79 18 chr13 38976323 38976551 -80768347 + L1MEd LINE L1 1573 1814 -4582 206 337 214 0 chr13 38977491 38977589 -80767309 - L2 LINE L2 0 3272 3154 294 340 92 76 chr13 38977600 38977982 -80766916 - L2 LINE L2 -48 3224 2837 22 0 0 0 chr13 38978105 38978127 -80766771 + AT_rich Low_complexity Low_complexity 1 22 0 402 350 79 46 chr13 38978158 38978549 -80766349 - L2 LINE L2 -649 2665 2262 297 287 124 16 chr13 38980004 38980133 -80764765 + MIR3 SINE MIR 20 162 -46 702 204 45 17 chr13 38980142 38980318 -80764580 + Charlie8 DNA MER1_type 57 237 -2180 1102 180 24 33 chr13 38980407 38980618 -80764280 - MER3 DNA MER1_type 0 209 1 405 301 22 22 chr13 38981516 38981652 -80763246 + MER5B DNA MER1_type 43 178 0 2289 76 38 3 chr13 38982984 38983275 -80761623 - AluY SINE Alu -10 301 1 189 314 124 46 chr13 38983467 38983620 -80761278 - MER5A DNA MER1_type -3 186 22 429 183 11 32 chr13 38983735 38983828 -80761070 - MER5A DNA MER1_type -90 99 9 484 274 97 6 chr13 38983914 38984089 -80760809 + MIR SINE MIR 2 192 -70 378 0 0 0 chr13 38984299 38984341 -80760557 + (TG)n Simple_repeat Simple_repeat 2 43 0 902 38 0 0 chr13 38985450 38985555 -80759343 - L1PA8 LINE L1 -2 6170 6066 388 327 49 12 chr13 38985849 38986011 -80758887 + MER5B DNA MER1_type 5 172 -6 * 486 340 6 19 chr13 38985999 38986158 -80758740 - MIR3 SINE MIR -32 176 20 460 248 38 124 chr13 38986291 38986501 -80758397 + MIR SINE MIR 56 247 -15 638 229 157 0 chr13 38987157 38987310 -80757588 + MER5A DNA MER1_type 13 189 0 280 294 29 0 chr13 38987627 38987729 -80757169 - L1MC4 LINE L1 -1324 6718 6614 2300 185 32 31 chr13 38987731 38988223 -80756675 - MLT2B1 LTR ERVL -20 472 1 510 267 175 52 chr13 38988237 38988893 -80756005 + L2 LINE L2 2564 3273 -40 326 261 0 0 chr13 38990300 38990365 -80754533 + MER69 DNA AcHobo 1 65 -2461 676 182 49 28 chr13 38990514 38990657 -80754241 + MER69 DNA AcHobo 2380 2525 -1 371 184 208 48 chr13 38991463 38991588 -80753310 - L2 LINE L2 0 3313 3169 461 259 93 51 chr13 38992961 38993177 -80751721 - L2 LINE L2 -123 3190 2966 315 277 0 0 chr13 38993486 38993551 -80751347 + MER69 DNA AcHobo 1 65 -2461 2617 267 106 12 chr13 38993561 38994446 -80750452 - L2 LINE L2 -363 2951 1984 298 268 52 0 chr13 38994447 38994544 -80750354 - L2 LINE L2 -2383 931 830 227 179 221 63 chr13 38994545 38994640 -80750258 - Charlie2 DNA MER1_type -2718 144 35 439 254 164 5 chr13 38994736 38994925 -80749973 + L2 LINE L2 1319 1537 -1777 460 244 64 19 chr13 38994929 38995085 -80749813 + L1MC4 LINE L1 7879 8041 -1 1172 210 178 25 chr13 38995121 38995421 -80749477 + Charlie2 DNA MER1_type 2249 2502 -360 2243 60 63 0 chr13 38995421 38995705 -80749193 - AluY SINE Alu -9 302 1 1172 210 178 25 chr13 38995705 38995933 -80748965 + Charlie2 DNA MER1_type 2502 2858 -4 1213 297 79 2 chr13 38995968 38996386 -80748512 - L2 LINE L2 -2031 1283 834 1495 220 133 21 chr13 38996386 38996968 -80747930 + MLT1E3 LTR MaLR 1 597 -27 1911 273 88 26 chr13 38996984 38997714 -80747184 - L2 LINE L2 -2492 822 48 1971 185 83 37 chr13 38997994 38998427 -80746471 - MSTB2 LTR MaLR 0 457 5 24 0 0 0 chr13 38999205 38999229 -80745669 + AT_rich Low_complexity Low_complexity 1 24 0 376 349 94 10 chr13 38999729 38999921 -80744977 - MIR SINE MIR -21 241 34 1251 168 15 58 chr13 39000390 39000664 -80744234 + AluJo SINE Alu 48 309 -3 650 254 128 89 chr13 39001685 39002248 -80742650 + MER45C DNA AcHobo 4 633 -320 354 127 0 0 chr13 39002243 39002298 -80742600 + MER45C DNA AcHobo 899 953 0 * 222 320 26 0 chr13 39002328 39002406 -80742492 - L3 LINE CR1 -763 814 735 440 299 69 10 chr13 39002753 39002957 -80741941 - MER67D LTR ERV1 -3 511 296 * 1806 201 37 16 chr13 39002955 39003338 -80741560 - MER67B LTR ERV1 -270 391 1 451 335 65 39 chr13 39004280 39004590 -80740308 + L3 LINE CR1 687 1004 -573 1483 208 68 42 chr13 39005451 39005875 -80739023 - L1ME1 LINE L1 -4 6162 5728 1853 185 46 48 chr13 39005895 39006355 -80738543 + MLT1C LTR MaLR 1 459 -8 1494 202 105 8 chr13 39006361 39007241 -80737657 - L1ME1 LINE L1 -470 5696 4680 180 301 89 96 chr13 39007879 39008025 -80736873 - L2 LINE L2 -5 3267 3123 786 229 62 110 chr13 39009119 39009538 -80735360 - MLT1J LTR MaLR -3 508 110 230 236 36 0 chr13 39009497 39009552 -80735346 - LTR67 LTR ERVL -401 156 100 * 582 15 0 0 chr13 39010474 39010541 -80734357 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 295 152 15 15 chr13 39010541 39010607 -80734291 + GA-rich Low_complexity Low_complexity 2 67 0 518 269 73 18 chr13 39011348 39011395 -80733503 + MIR SINE MIR 10 53 -209 2026 130 10 17 chr13 39011395 39011695 -80733203 + AluSx SINE Alu 1 298 -14 518 269 73 18 chr13 39011695 39011882 -80733016 + MIR SINE MIR 53 250 -12 1191 158 79 0 chr13 39012162 39012364 -80732534 + MER58A DNA MER1_type 1 218 -6 255 311 119 37 chr13 39012983 39013227 -80731671 - L2 LINE L2 -653 2661 2398 1200 107 40 0 chr13 39013272 39013449 -80731449 - L1MB2 LINE L1 -3 6168 5985 254 314 57 19 chr13 39013572 39013677 -80731221 - L2 LINE L2 0 3272 3164 1786 235 21 41 chr13 39014272 39014740 -80730158 + MER20B DNA MER1_type 33 491 -292 597 157 0 0 chr13 39014900 39014989 -80729909 + AluSg/x SINE Alu 208 296 -16 240 203 43 29 chr13 39014997 39015066 -80729832 + MIR SINE MIR 57 126 -136 408 154 108 15 chr13 39015296 39015426 -80729472 + MER20B DNA MER1_type 568 709 -74 244 288 15 0 chr13 39015427 39015493 -80729405 - MIR SINE MIR -75 133 67 353 350 126 37 chr13 39015564 39015993 -80728905 - L2 LINE L2 -2 3270 2804 193 318 84 58 chr13 39016125 39016433 -80728465 - L2 LINE L2 -694 2620 2305 323 273 230 7 chr13 39016513 39016652 -80728246 - MIR SINE MIR -70 192 23 1012 181 0 0 chr13 39018524 39018695 -80726203 - FRAM SINE Alu -7 169 1 196 326 101 11 chr13 39019174 39019263 -80725635 - L2 LINE L2 -25 3288 3192 432 258 198 22 chr13 39019550 39019732 -80725166 - MIR SINE MIR -18 244 31 1750 185 0 13 chr13 39021414 39021716 -80723182 + AluJo SINE Alu 1 298 -14 399 285 107 69 chr13 39022671 39022990 -80721908 - L2 LINE L2 0 3272 2942 355 310 53 103 chr13 39023738 39024206 -80720692 + L2 LINE L2 2824 3268 -4 265 238 129 0 chr13 39024824 39024925 -80719973 - MER103 DNA DNA -2 164 51 258 32 0 0 chr13 39025048 39025079 -80719819 + (CA)n Simple_repeat Simple_repeat 2 32 0 214 158 0 0 chr13 39025468 39025506 -80719392 + CT-rich Low_complexity Low_complexity 1 38 0 193 29 59 0 chr13 39026529 39026563 -80718335 + (TA)n Simple_repeat Simple_repeat 2 37 0 1721 65 32 9 chr13 39027073 39027324 -80717574 + L1PA11 LINE L1 5940 6195 0 2213 129 0 0 chr13 39027406 39027715 -80717183 + AluSx SINE Alu 3 311 -1 213 297 30 69 chr13 39027995 39028096 -80716802 + MIR SINE MIR 15 111 -151 770 198 111 0 chr13 39028514 39028686 -80716212 + MIR SINE MIR 7 197 -65 530 317 6 28 chr13 39028684 39028864 -80716034 - MIR SINE MIR -73 189 14 * 228 271 0 0 chr13 39029153 39029201 -80715697 + polypurine Low_complexity Low_complexity 3 50 0 238 290 62 92 chr13 39029285 39029557 -80715341 - L2 LINE L2 -1491 1823 1560 588 65 0 0 chr13 39029593 39029670 -80715228 + (GGATG)n Simple_repeat Simple_repeat 5 81 0 249 33 0 0 chr13 39029670 39029700 -80715198 - MLT2A1 LTR ERVL 0 444 415 9475 70 6 1 chr13 39029701 39030877 -80714021 - HERVL-A1 LTR ERVL -4472 1182 1 3177 69 72 19 chr13 39030877 39030923 -80713975 - MLT2A1 LTR ERVL 0 444 402 441 97 0 0 chr13 39030923 39030995 -80713903 + (TA)n Simple_repeat Simple_repeat 2 73 0 3177 69 72 19 chr13 39030995 39031366 -80713532 - MLT2A1 LTR ERVL -42 402 5 306 212 15 15 chr13 39031419 39031485 -80713413 - MER112 DNA MER1_type -186 74 9 232 230 0 54 chr13 39031655 39031729 -80713169 - L2 LINE L2 -1 3312 3243 2017 124 7 7 chr13 39032574 39032886 -80712012 - AluSq SINE Alu 0 313 1 211 262 33 0 chr13 39032886 39032947 -80711951 - MIR3 SINE MIR -54 154 92 197 278 134 12 chr13 39033894 39033999 -80710899 - MIR SINE MIR -62 146 27 242 309 203 0 chr13 39035311 39035434 -80709464 + MIR SINE MIR 16 163 -99 341 204 9 3 chr13 39037045 39037182 -80707716 + MER96B DNA MER1_type? 1 176 -241 201 121 30 15 chr13 39037408 39037474 -80707424 + (TTTA)n Simple_repeat Simple_repeat 4 70 0 21 82 0 0 chr13 39037480 39037529 -80707369 + AT_rich Low_complexity Low_complexity 1 49 0 2375 97 0 0 chr13 39037531 39037829 -80707069 + AluSx SINE Alu 1 298 -14 25 31 0 0 chr13 39037846 39037878 -80707020 + AT_rich Low_complexity Low_complexity 1 32 0 251 143 24 0 chr13 39037895 39037937 -80706961 + MER96B DNA MER1_type? 190 232 -185 1655 174 36 44 chr13 39038173 39038307 -80706591 + MLT1A1 LTR MaLR 2 136 -229 2579 125 80 10 chr13 39038307 39038707 -80706191 - MSTA LTR MaLR 0 428 1 1655 174 36 44 chr13 39038707 39038935 -80705963 + MLT1A1 LTR MaLR 136 361 -4 219 204 0 0 chr13 39038954 39039003 -80705895 + (TG)n Simple_repeat Simple_repeat 2 50 0 1843 114 4 46 chr13 39040046 39040327 -80704571 - AluSx SINE Alu -17 295 27 474 357 43 4 chr13 39040490 39040725 -80704173 - MIR SINE MIR 0 262 19 429 272 24 0 chr13 39041540 39041665 -80703233 - MER94 DNA DNA -5 129 2 304 215 108 39 chr13 39043245 39043375 -80701523 - MLT1H LTR MaLR -375 174 36 280 280 0 0 chr13 39043394 39043469 -80701429 - L1P4 LINE L1 -361 5805 5731 274 252 54 68 chr13 39043504 39043651 -80701247 - MIR SINE MIR -70 192 48 3296 160 60 88 chr13 39044437 39045185 -80699713 - LTR8A LTR ERV1 0 727 1 2105 251 50 44 chr13 39045185 39045842 -80699056 - HUERS-P1 LTR ERV1 0 6263 5603 4929 145 88 42 chr13 39045852 39045906 -80698992 - HUERS-P1 LTR ERV1 -2862 5258 5208 2311 98 0 7 chr13 39045906 39046202 -80698696 + AluSq SINE Alu 1 294 -19 4929 145 88 42 chr13 39046202 39047198 -80697700 - HUERS-P1 LTR ERV1 -2912 5208 2326 189 107 0 0 chr13 39047205 39047233 -80697665 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3743 91 12 4 chr13 39047233 39047719 -80697179 - L1PB1 LINE L1 -6 6145 5656 5163 121 16 5 chr13 39047727 39050165 -80694733 - L1PBa LINE L1 -2988 3874 1360 4668 158 20 28 chr13 39050167 39050254 -80694644 - HUERS-P1 LTR ERV1 -1786 3575 3489 2108 143 0 0 chr13 39050254 39050555 -80694343 - AluSx SINE Alu -11 301 1 4668 158 20 28 chr13 39050555 39051486 -80693412 - HUERS-P1 LTR ERV1 -1872 3489 1843 237 184 20 0 chr13 39051535 39051584 -80693314 - MER34C LTR ERV1 -366 219 170 3233 212 71 79 chr13 39051585 39052539 -80692359 - HUERS-P1 LTR ERV1 -3083 1797 836 2150 137 0 0 chr13 39052539 39052838 -80692060 + AluSx SINE Alu 1 299 -13 3233 212 71 79 chr13 39052838 39053440 -80691458 - HUERS-P1 LTR ERV1 -4044 836 941 225 0 0 0 chr13 39053440 39053465 -80691433 + (TTA)n Simple_repeat Simple_repeat 1 25 0 3233 212 71 79 chr13 39053465 39053639 -80691259 - HUERS-P1 LTR ERV1 -3938 942 768 * 4620 182 81 45 chr13 39053626 39054877 -80690021 - HUERS-P1 LTR ERV1 -4648 1615 364 606 321 5 27 chr13 39054961 39055185 -80689713 - HUERS-P1 LTR ERV1 -6044 219 1 3098 167 93 66 chr13 39055185 39055893 -80689005 - LTR8A LTR ERV1 0 727 1 272 301 26 53 chr13 39057383 39057496 -80687402 + MIR SINE MIR 37 146 -62 26 0 0 0 chr13 39059041 39059067 -80685831 + AT_rich Low_complexity Low_complexity 1 26 0 861 150 0 0 chr13 39059067 39059200 -80685698 - L1MA8 LINE L1 -5 6286 6154 651 281 51 41 chr13 39059206 39059598 -80685300 + L1ME4a LINE L1 5706 6101 -20 503 220 170 65 chr13 39059781 39059981 -80684917 + MIR SINE MIR 39 259 -3 228 67 0 0 chr13 39060546 39060576 -80684322 + (A)n Simple_repeat Simple_repeat 1 30 0 726 213 72 23 chr13 39060855 39061076 -80683822 - MIR SINE MIR -30 232 1 243 0 0 0 chr13 39061091 39061118 -80683780 + (TG)n Simple_repeat Simple_repeat 1 27 0 405 0 0 0 chr13 39061356 39061401 -80683497 + (TG)n Simple_repeat Simple_repeat 1 45 0 1745 209 71 23 chr13 39061454 39061847 -80683051 + MLT2D LTR ERVL 3 414 0 243 0 0 0 chr13 39062260 39062287 -80682611 + (A)n Simple_repeat Simple_repeat 1 27 0 439 232 36 51 chr13 39063258 39063396 -80681502 + L2 LINE L2 3154 3289 -24 309 212 40 61 chr13 39063497 39063596 -80681302 + MIR SINE MIR 21 117 -91 621 317 60 0 chr13 39064309 39064508 -80680390 - MIR SINE MIR -36 226 16 235 314 142 58 chr13 39064640 39065245 -80679653 + L2 LINE L2 1656 2311 -1003 2663 29 3 19 chr13 39065564 39065880 -80679018 - AluY SINE Alu 0 311 1 241 309 89 32 chr13 39065897 39066020 -80678878 + L2 LINE L2 3184 3313 0 2000 181 12 35 chr13 39067488 39067887 -80677011 - MLT1B LTR MaLR 0 390 1 250 148 0 148 chr13 39067983 39068044 -80676854 - L2 LINE L2 -190 3082 3031 415 278 216 22 chr13 39068595 39068868 -80676030 - MLT1J1 LTR MaLR -117 329 4 2295 91 3 0 chr13 39069291 39069589 -80675309 + AluY SINE Alu 1 299 -12 382 239 209 0 chr13 39070462 39070596 -80674302 + MIR SINE MIR 74 235 -27 378 259 9 0 chr13 39071059 39071171 -80673727 - L1M4 LINE L1 -1059 5087 4975 * 2313 220 100 62 chr13 39071167 39071333 -80673565 - L1MEc LINE L1 -2111 4104 3946 2019 68 4 0 chr13 39071333 39071582 -80673316 - AluY SINE Alu -2 309 60 2313 220 100 62 chr13 39071582 39072003 -80672895 - L1MEc LINE L1 -2269 3946 3467 2505 99 0 0 chr13 39072003 39072316 -80672582 - AluSq SINE Alu 0 313 1 2313 220 100 62 chr13 39072316 39072636 -80672262 - L1MEc LINE L1 -2748 3467 3161 * 3176 247 60 40 chr13 39072605 39074238 -80670660 - L1MEc LINE L1 -4436 1960 201 2267 98 20 0 chr13 39074984 39075279 -80669619 - AluSp SINE Alu -12 301 1 1873 187 89 11 chr13 39075487 39075845 -80669053 - MLT1B LTR MaLR -4 386 1 1591 174 0 25 chr13 39075914 39076190 -80668708 + AluJb SINE Alu 1 269 -43 1816 237 79 7 chr13 39076346 39076801 -80668097 - L1ME3A LINE L1 -174 5996 5509 549 213 121 87 chr13 39076812 39076949 -80667949 + L1ME4a LINE L1 5710 5841 -280 1992 148 10 3 chr13 39076949 39077259 -80667639 + AluSx SINE Alu 1 312 0 549 213 121 87 chr13 39077259 39077511 -80667387 + L1ME4a LINE L1 5841 6112 -9 531 244 141 6 chr13 39077770 39077926 -80666972 + MER5B DNA MER1_type 1 177 -1 3636 132 29 61 chr13 39078261 39078884 -80666014 + LTR26 LTR ERV1 1 603 0 519 279 37 23 chr13 39078965 39079180 -80665718 - L1ME1 LINE L1 -5 6161 5944 1837 179 153 37 chr13 39079187 39079678 -80665220 - LTR10A LTR ERV1 -61 548 1 1876 202 122 5 chr13 39079687 39080180 -80664718 - L1ME1 LINE L1 -211 5953 5397 440 182 0 34 chr13 39080220 39080308 -80664590 + MER21B LTR ERV1 6 90 -773 2629 216 101 61 chr13 39080332 39080880 -80664018 + MER21B LTR ERV1 22 613 -250 1994 127 0 16 chr13 39080880 39081196 -80663702 + AluSx SINE Alu 1 311 -1 2629 216 101 61 chr13 39081196 39081446 -80663452 + MER21B LTR ERV1 613 852 -11 506 181 38 56 chr13 39081447 39081607 -80663291 + L1M4 LINE L1 4959 5115 -1031 208 309 165 10 chr13 39081654 39081751 -80663147 - MIR SINE MIR -131 131 20 1752 146 55 6 chr13 39082061 39082390 -80662508 + L1MA8 LINE L1 5947 6291 0 1788 164 0 0 chr13 39083107 39083394 -80661504 + AluJb SINE Alu 1 287 -25 1981 129 3 3 chr13 39083402 39083705 -80661193 + AluSx SINE Alu 1 303 -9 1236 88 6 2 chr13 39083857 39084029 -80660869 - L1HS LINE L1 -267 5854 5674 2802 44 3 3 chr13 39084029 39084363 -80660535 + L1PA5 LINE L1 5804 6145 -9 1236 88 6 2 chr13 39084363 39084393 -80660505 - L1HS LINE L1 -447 5674 5646 205 215 185 15 chr13 39085217 39085282 -80659616 - MIR3 SINE MIR -7 201 126 529 283 178 0 chr13 39085289 39085508 -80659390 - MIR SINE MIR -3 259 2 415 353 14 0 chr13 39085685 39085824 -80659074 - MIR3 SINE MIR -8 200 60 543 231 74 79 chr13 39087208 39087411 -80657487 + L3 LINE CR1 1178 1379 -198 356 290 81 81 chr13 39087454 39087482 -80657416 - L2 LINE L2 -1 3271 3244 392 160 122 99 chr13 39087482 39087613 -80657285 - MER94 DNA DNA 0 134 1 356 290 81 81 chr13 39087613 39087708 -80657190 - L2 LINE L2 -27 3245 3148 180 328 0 31 chr13 39087752 39087816 -80657082 - MIR3 SINE MIR -7 201 140 * 354 297 8 34 chr13 39087809 39087927 -80656971 - L2 LINE L2 0 3313 3199 256 339 62 8 chr13 39087956 39088086 -80656812 - L3 LINE CR1 -162 1415 1279 1171 74 0 0 chr13 39088087 39088235 -80656663 + L1PA8 LINE L1 5962 6109 -63 328 322 249 8 chr13 39088383 39088628 -80656270 - L2 LINE L2 -1 3312 3009 216 195 195 26 chr13 39088698 39088775 -80656123 - L3 LINE CR1 -899 678 589 264 122 0 0 chr13 39089418 39089459 -80655439 + (A)n Simple_repeat Simple_repeat 1 41 0 221 200 0 0 chr13 39089727 39089767 -80655131 - L2 LINE L2 0 3313 3274 333 349 47 0 chr13 39090279 39090408 -80654490 + MIR SINE MIR 60 194 -68 2767 98 0 6 chr13 39090548 39090914 -80653984 - THE1B LTR MaLR 0 364 1 235 163 0 23 chr13 39091842 39091885 -80653013 + L2 LINE L2 3262 3303 -10 383 299 55 18 chr13 39091936 39092100 -80652798 - MIR3 SINE MIR -9 199 30 180 250 0 77 chr13 39092312 39092364 -80652534 + MER5B DNA MER1_type 5 52 -126 207 302 217 0 chr13 39093212 39093318 -80651580 + MIR SINE MIR 134 262 0 206 322 26 70 chr13 39094591 39094706 -80650192 + MIR SINE MIR 16 125 -83 539 265 105 6 chr13 39094770 39094932 -80649966 + MER5A DNA MER1_type 12 189 0 691 257 46 28 chr13 39095056 39095274 -80649624 - MIR SINE MIR -37 225 4 1295 189 0 0 chr13 39095563 39095791 -80649107 + L1MC1 LINE L1 6016 6243 -90 21 36 0 0 chr13 39095800 39095828 -80649070 + AT_rich Low_complexity Low_complexity 1 28 0 2164 108 3 7 chr13 39095837 39096143 -80648755 + AluSx SINE Alu 1 305 -7 1173 164 0 9 chr13 39096143 39096356 -80648542 + AluJo SINE Alu 88 298 -14 843 216 28 23 chr13 39097267 39097473 -80647425 + MIR SINE MIR 29 233 -29 223 290 118 0 chr13 39097624 39097717 -80647181 - L2 LINE L2 -21 3292 3189 627 274 11 11 chr13 39098817 39098996 -80645902 + MIR3 SINE MIR 30 208 0 22 0 0 0 chr13 39099804 39099826 -80645072 + AT_rich Low_complexity Low_complexity 1 22 0 201 121 0 0 chr13 39101952 39101985 -80642913 + (ATG)n Simple_repeat Simple_repeat 3 35 0 269 250 17 17 chr13 39101986 39102046 -80642852 - MIR SINE MIR -6 256 197 449 362 23 18 chr13 39102339 39102575 -80642323 + MIR SINE MIR 8 249 -13 2624 127 43 19 chr13 39102848 39103266 -80641632 - MSTA LTR MaLR 0 428 1 851 222 5 26 chr13 39103372 39103561 -80641337 + MER5A DNA MER1_type 1 185 -4 1163 169 113 108 chr13 39104154 39104516 -80640382 + MLT1A1 LTR MaLR 2 365 0 640 172 26 0 chr13 39104544 39104660 -80640238 + AluJo SINE Alu 4 122 -190 43715 34 21 1 chr13 39104682 39110713 -80634185 + L1PA2 LINE L1 3 6155 0 936 172 5 32 chr13 39110736 39110922 -80633976 + AluJo SINE Alu 120 300 -12 571 269 9 104 chr13 39112374 39112586 -80632312 - MIR SINE MIR -38 224 33 305 276 60 82 chr13 39112972 39113106 -80631792 - MIR SINE MIR -124 138 8 21 0 0 0 chr13 39113440 39113461 -80631437 + AT_rich Low_complexity Low_complexity 1 21 0 1713 116 7 25 chr13 39113541 39113689 -80631209 - AluSg SINE Alu -31 279 137 2299 93 0 3 chr13 39113689 39114002 -80630896 - AluSq SINE Alu -1 312 1 1713 116 7 25 chr13 39114002 39114137 -80630761 - AluSg SINE Alu -173 137 1 309 314 69 0 chr13 39115095 39115197 -80629701 - L2 LINE L2 -19 3253 3145 1840 89 100 4 chr13 39115309 39115578 -80629320 - AluSx SINE Alu -17 295 1 263 273 65 0 chr13 39115589 39115666 -80629232 + MER5A DNA MER1_type 96 177 -12 629 288 104 14 chr13 39115934 39116156 -80628742 + MIR SINE MIR 12 253 -9 535 108 21 21 chr13 39116611 39116704 -80628194 + MER53 DNA DNA 1 93 -96 418 132 22 33 chr13 39116627 39116718 -80628180 - MER53 DNA DNA -7 182 93 * 249 57 0 0 chr13 39117264 39117299 -80627599 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr13 39117444 39117465 -80627433 + AT_rich Low_complexity Low_complexity 1 21 0 1811 137 0 11 chr13 39117465 39117749 -80627149 + AluJo SINE Alu 15 295 -17 441 279 104 7 chr13 39117895 39118049 -80626849 + MIR3 SINE MIR 32 200 -8 180 0 0 0 chr13 39120127 39120147 -80624751 + (A)n Simple_repeat Simple_repeat 1 20 0 271 305 101 32 chr13 39120683 39120853 -80624045 + MIR SINE MIR 3 201 -61 740 184 153 0 chr13 39120853 39121016 -80623882 + MER5A DNA MER1_type 1 188 -1 271 305 101 32 chr13 39121016 39121044 -80623854 + MIR SINE MIR 201 226 -36 2677 58 81 0 chr13 39121957 39122304 -80622594 - THE1C LTR MaLR 0 375 1 286 247 12 24 chr13 39122425 39122510 -80622388 - L2 LINE L2 0 3313 3230 730 252 81 66 chr13 39122867 39123072 -80621826 + MIR SINE MIR 1 212 -50 2382 76 0 0 chr13 39123072 39123373 -80621525 + AluSx SINE Alu 1 301 -11 730 252 81 66 chr13 39123373 39123425 -80621473 + MIR SINE MIR 212 262 0 237 250 47 0 chr13 39124053 39124117 -80620781 + MIR SINE MIR 137 203 -59 842 221 201 20 chr13 39124136 39124442 -80620456 - MLT1I LTR MaLR -19 390 72 299 238 0 0 chr13 39124471 39124534 -80620364 + MIR SINE MIR 200 262 0 346 302 16 8 chr13 39124540 39124669 -80620229 + MIR SINE MIR 130 259 -3 417 313 82 26 chr13 39125355 39125550 -80619348 - L2 LINE L2 -2 3311 3106 514 232 173 5 chr13 39126066 39126251 -80618647 + LTR16C LTR ERVL 274 489 -2 224 256 39 26 chr13 39126255 39126333 -80618565 + MIR SINE MIR 79 157 -105 780 261 19 71 chr13 39126539 39126628 -80618270 + MIR SINE MIR 9 101 -161 2322 151 58 19 chr13 39126628 39127040 -80617858 + MSTA LTR MaLR 1 428 0 780 261 19 71 chr13 39127040 39127218 -80617680 + MIR SINE MIR 101 262 0 656 273 122 37 chr13 39127470 39127906 -80616992 - L1ME4a LINE L1 -115 6006 5534 219 260 67 29 chr13 39129050 39129154 -80615744 - L3 LINE CR1 -417 1160 1053 582 216 133 76 chr13 39129355 39129791 -80615107 + L1ME4a LINE L1 5661 6121 0 1952 97 7 7 chr13 39129915 39130205 -80614693 - AluSg SINE Alu -18 292 3 2198 93 4 0 chr13 39131145 39131454 -80613444 - AluSp SINE Alu 0 311 2 351 0 0 0 chr13 39131464 39131503 -80613395 + (T)n Simple_repeat Simple_repeat 1 39 0 533 268 20 40 chr13 39131896 39132094 -80612804 + MIR SINE MIR 61 254 -8 594 215 6 37 chr13 39132499 39132662 -80612236 + MIR SINE MIR 104 261 -1 195 310 50 30 chr13 39132717 39132817 -80612081 + MIR SINE MIR 88 189 -73 212 0 36 0 chr13 39132859 39132887 -80612011 + (TTG)n Simple_repeat Simple_repeat 2 30 0 345 47 0 0 chr13 39132893 39132936 -80611962 + (TG)n Simple_repeat Simple_repeat 2 44 0 2087 99 11 14 chr13 39132936 39133220 -80611678 - AluSc SINE Alu -26 283 1 521 229 11 11 chr13 39133832 39134007 -80610891 + GA-rich Low_complexity Low_complexity 3 177 0 306 331 60 0 chr13 39134706 39134857 -80610041 - MIR SINE MIR -7 255 96 409 194 142 37 chr13 39135424 39135558 -80609340 + MIR SINE MIR 89 236 -26 1103 254 23 23 chr13 39136041 39136383 -80608515 - L1MEc LINE L1 -4512 1884 1543 180 271 0 0 chr13 39136476 39136524 -80608374 - L2 LINE L2 0 3313 3266 1932 132 86 9 chr13 39136568 39136916 -80607982 - THE1C LTR MaLR 0 375 1 215 303 58 32 chr13 39136958 39137113 -80607785 - L2 LINE L2 -292 3021 2863 959 189 43 56 chr13 39137114 39137179 -80607719 + MER96B DNA MER1_type? 1 65 -352 2306 106 0 3 chr13 39137179 39137480 -80607418 + AluSx SINE Alu 1 300 -12 959 189 43 56 chr13 39137480 39137647 -80607251 + MER96B DNA MER1_type? 65 230 -187 328 183 0 16 chr13 39137652 39137731 -80607167 - MER96B DNA MER1_type? -102 73 1 216 373 9 9 chr13 39138242 39138352 -80606546 + MIR SINE MIR 39 148 -114 279 268 83 51 chr13 39139304 39139461 -80605437 - MER20B DNA MER1_type -616 167 6 288 359 0 8 chr13 39139594 39139711 -80605187 + MIR SINE MIR 77 192 -70 365 314 69 0 chr13 39141455 39141643 -80603255 + MIR SINE MIR 62 262 0 4198 55 2 4 chr13 39142176 39142700 -80602198 + L1PA8 LINE L1 5650 6172 0 686 112 87 0 chr13 39142724 39142885 -80602013 + GA-rich Low_complexity Low_complexity 5 179 0 1226 80 11 0 chr13 39142892 39143067 -80601831 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 644 115 21 0 chr13 39144027 39144123 -80600775 + AluJo SINE Alu 37 134 -178 22 35 0 0 chr13 39144174 39144203 -80600695 + AT_rich Low_complexity Low_complexity 1 29 0 257 288 172 18 chr13 39144273 39144710 -80600188 + L1MB4 LINE L1 2311 2814 -3332 * 1268 215 37 44 chr13 39144691 39144735 -80600163 + L1MB4 LINE L1 3346 3389 -2757 3537 118 39 0 chr13 39144735 39145242 -80599656 - MER1A DNA MER1_type 0 527 1 1268 215 37 44 chr13 39145242 39145602 -80599296 + L1MB4 LINE L1 3389 3747 -2399 828 220 24 43 chr13 39145607 39145816 -80599082 + MER6B DNA MER2_type 6 210 0 526 226 16 16 chr13 39145816 39145940 -80598958 + L1MB4 LINE L1 3746 3869 -2277 * 4567 183 28 13 chr13 39145935 39146805 -80598093 + L1MB4 LINE L1 4597 5504 -676 246 32 0 0 chr13 39146805 39146836 -80598062 + (CA)n Simple_repeat Simple_repeat 2 32 0 4567 183 28 13 chr13 39146836 39147516 -80597382 + L1MB4 LINE L1 5504 6172 -8 256 189 0 0 chr13 39147612 39147665 -80597233 + L1MCc LINE L1 1410 1462 -4961 962 112 0 0 chr13 39147676 39147801 -80597097 - AluSq SINE Alu -78 235 111 1564 268 105 10 chr13 39147810 39148485 -80596413 + L1MCc LINE L1 2926 3664 -3277 30 0 0 0 chr13 39148728 39148758 -80596140 + AT_rich Low_complexity Low_complexity 1 30 0 255 290 29 0 chr13 39148895 39148964 -80595934 - L2 LINE L2 -3 3269 3199 1426 153 9 113 chr13 39149132 39149459 -80595439 - AluJb SINE Alu -9 293 1 272 27 27 0 chr13 39149581 39149618 -80595280 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 189 143 29 0 chr13 39150012 39150047 -80594851 + L2 LINE L2 3266 3301 -12 509 267 82 0 chr13 39150364 39150510 -80594388 - MIR SINE MIR -2 260 103 181 333 148 30 chr13 39150593 39150896 -80594002 - L2 LINE L2 -1117 2197 1859 279 0 0 0 chr13 39150944 39150975 -80593923 + (TC)n Simple_repeat Simple_repeat 2 32 0 234 0 0 0 chr13 39151801 39151827 -80593071 + (A)n Simple_repeat Simple_repeat 1 26 0 1215 283 60 22 chr13 39153848 39154617 -80590281 + L2 LINE L2 2518 3312 -1 181 196 39 59 chr13 39154625 39154676 -80590222 - MIR SINE MIR -209 53 4 236 286 9 54 chr13 39154917 39155029 -80589869 + L2 LINE L2 3121 3227 -86 388 277 21 0 chr13 39155528 39155622 -80589276 + MER117 DNA MER1_type 101 196 -1 1778 175 0 19 chr13 39157143 39157451 -80587447 + AluJb SINE Alu 1 302 -10 318 239 29 142 chr13 39158232 39158471 -80586427 - MIR SINE MIR -16 246 35 2087 142 3 0 chr13 39159110 39159406 -80585492 - AluSx SINE Alu -15 297 1 340 329 41 7 chr13 39159429 39159575 -80585323 + MIR SINE MIR 30 180 -82 268 220 30 50 chr13 39159879 39159980 -80584918 - LTR67 LTR ERVL -14 509 412 2186 126 0 0 chr13 39160936 39161262 -80583636 - AluSx SINE Alu 0 312 1 23 0 0 0 chr13 39161300 39161323 -80583575 + AT_rich Low_complexity Low_complexity 1 23 0 3285 228 88 53 chr13 39161652 39162884 -80582014 - L1MC5 LINE L1 -30 7931 6656 512 199 65 111 chr13 39162905 39163211 -80581687 - L1MC5 LINE L1 -371 7590 7299 22017 66 3 0 chr13 39164824 39168502 -80576396 + L1PA6 LINE L1 2460 6154 0 2243 130 30 16 chr13 39169255 39169625 -80575273 - THE1C LTR MaLR 0 375 1 1098 278 66 37 chr13 39170258 39170785 -80574113 + L1ME4a LINE L1 5533 6078 -43 342 0 0 0 chr13 39170785 39170823 -80574075 + (TA)n Simple_repeat Simple_repeat 2 39 0 1098 278 66 37 chr13 39170823 39170838 -80574060 + L1ME4a LINE L1 6078 6091 -30 428 254 105 74 chr13 39171992 39172315 -80572583 - MLT1I LTR MaLR -7 402 70 1440 175 108 16 chr13 39172686 39173001 -80571897 - MER2 DNA MER2_type 0 344 1 437 254 75 128 chr13 39173591 39173819 -80571079 + L2 LINE L2 2467 2706 -608 2394 50 0 0 chr13 39173819 39174140 -80570758 + AluY SINE Alu 1 321 0 437 254 75 128 chr13 39174140 39174185 -80570713 + L2 LINE L2 2706 2752 -562 617 68 0 0 chr13 39174185 39174273 -80570625 - L1PB1 LINE L1 -1 6150 6063 437 254 75 128 chr13 39174273 39174296 -80570602 + L2 LINE L2 2752 2775 -539 432 133 11 33 chr13 39174296 39174386 -80570512 + L1PB4 LINE L1 6068 6155 -1 437 254 75 128 chr13 39174386 39174609 -80570289 + L2 LINE L2 2775 2961 -353 194 108 0 27 chr13 39175887 39175924 -80568974 - MER5B DNA MER1_type -77 101 66 279 336 0 0 chr13 39176797 39176901 -80567997 - L3 LINE CR1 -8 1569 1466 748 356 76 7 chr13 39177457 39177890 -80567008 - L3 LINE CR1 -170 1407 945 330 87 0 0 chr13 39178731 39178777 -80566121 + (CA)n Simple_repeat Simple_repeat 2 47 0 342 0 0 0 chr13 39179857 39179895 -80565003 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr13 39180666 39180688 -80564210 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr13 39180928 39180963 -80563935 + AT_rich Low_complexity Low_complexity 1 35 0 382 276 41 32 chr13 39181834 39181957 -80562941 - MIR SINE MIR -137 125 2 724 281 114 48 chr13 39181993 39182406 -80562492 - MLT1J1 LTR MaLR -6 440 1 1271 112 0 0 chr13 39182429 39182607 -80562291 + AluSg/x SINE Alu 127 304 -8 2368 130 0 23 chr13 39182828 39183173 -80561725 + MER1B DNA MER1_type 1 337 0 2130 126 0 0 chr13 39183264 39183566 -80561332 + AluSg SINE Alu 1 302 -8 487 266 28 0 chr13 39184884 39185027 -80559871 - MER103 DNA DNA -17 149 3 180 271 62 52 chr13 39185328 39185424 -80559474 - L3 LINE CR1 -334 1243 1147 1776 124 0 0 chr13 39185846 39186103 -80558795 - AluSx SINE Alu -55 257 1 1651 177 3 7 chr13 39186545 39186839 -80558059 + AluJo SINE Alu 1 293 -19 484 272 83 17 chr13 39187948 39188128 -80556770 - MIR SINE MIR -2 260 69 932 105 0 15 chr13 39188828 39188961 -80555937 - FLAM_C SINE Alu -2 131 1 202 339 16 48 chr13 39188971 39189095 -80555803 - MIR SINE MIR -120 142 23 26 0 0 0 chr13 39190537 39190563 -80554335 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr13 39191751 39191778 -80553120 + (TG)n Simple_repeat Simple_repeat 1 27 0 239 147 0 0 chr13 39194041 39194075 -80550823 + AluSx SINE Alu 1 34 -265 25 0 0 0 chr13 39194467 39194492 -80550406 + AT_rich Low_complexity Low_complexity 1 25 0 1724 97 4 16 chr13 39194503 39194842 -80550056 + AluSx SINE Alu 39 374 0 1645 127 156 16 chr13 39195154 39195462 -80549436 + MLT1C LTR MaLR 2 352 -115 1813 140 0 0 chr13 39195462 39195733 -80549165 + AluSx SINE Alu 1 271 -41 1234 38 5 32 chr13 39195788 39195973 -80548925 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 300 200 0 0 chr13 39195979 39196049 -80548849 + GA-rich Low_complexity Low_complexity 2 71 0 471 131 9 0 chr13 39196049 39196129 -80548769 + MLT1C LTR MaLR 245 407 -60 3023 179 72 34 chr13 39196131 39196846 -80548052 - Tigger7 DNA MER2_type -21 2566 1 236 121 0 0 chr13 39196846 39196878 -80548020 + MLT1C LTR MaLR 434 465 -2 433 263 112 50 chr13 39196942 39197201 -80547697 + L2 LINE L2 2970 3244 -69 238 294 171 24 chr13 39198059 39198229 -80546669 + MIR SINE MIR 64 258 -4 633 205 145 6 chr13 39201858 39202024 -80542874 + MER5A DNA MER1_type 1 189 0 1779 157 3 0 chr13 39202408 39202701 -80542197 - AluJb SINE Alu -16 296 3 463 333 78 16 chr13 39203467 39203725 -80541173 - L1M4 LINE L1 -2208 3938 3665 1840 106 53 0 chr13 39204007 39204291 -80540607 + AluSc SINE Alu 1 298 0 2012 131 7 0 chr13 39204532 39204829 -80540069 + AluSg SINE Alu 1 299 -11 219 152 0 136 chr13 39206193 39206259 -80538639 + L2 LINE L2 3252 3308 -5 180 111 0 0 chr13 39207022 39207049 -80537849 + (CA)n Simple_repeat Simple_repeat 1 27 0 321 89 0 0 chr13 39207612 39207657 -80537241 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 803 152 49 12 chr13 39208086 39208250 -80536648 + L1MB1 LINE L1 5998 6167 -1 1958 143 0 3 chr13 39208512 39208819 -80536079 + AluSx SINE Alu 1 306 -6 332 158 40 13 chr13 39209012 39209088 -80535810 - L1ME1 LINE L1 -5 6161 6084 1970 173 131 52 chr13 39209091 39209549 -80535349 + MLT1D LTR MaLR 12 505 0 936 196 116 40 chr13 39209549 39209706 -80535192 - L1ME2 LINE L1 -79 6154 6010 2092 120 0 0 chr13 39209706 39209997 -80534901 - AluSx SINE Alu -21 291 1 936 196 116 40 chr13 39209997 39210115 -80534783 - L1ME2 LINE L1 -223 6010 5858 6519 134 48 51 chr13 39210123 39210571 -80534327 - Tigger3b DNA MER2_type -1797 1231 783 1766 151 0 35 chr13 39210571 39210882 -80534016 - AluJo SINE Alu -12 300 1 6519 134 48 51 chr13 39210882 39210955 -80533943 - Tigger3b DNA MER2_type -2245 783 711 1931 140 0 0 chr13 39210955 39211255 -80533643 + AluSx SINE Alu 1 300 -12 6519 134 48 51 chr13 39211255 39211754 -80533144 - Tigger3b DNA MER2_type -2317 711 212 2056 128 25 0 chr13 39211754 39212074 -80532824 - L1PB1 LINE L1 0 6151 5824 6519 134 48 51 chr13 39212074 39212285 -80532613 - Tigger3b DNA MER2_type -2816 212 2 2228 202 45 12 chr13 39212287 39212401 -80532497 - L1ME2 LINE L1 -383 5852 5743 1932 191 39 34 chr13 39212401 39212866 -80532032 + MLT1C LTR MaLR 1 467 0 2228 202 45 12 chr13 39212866 39213369 -80531529 - L1ME2 LINE L1 -492 5743 5210 1919 248 66 16 chr13 39213370 39213919 -80530979 - L1ME2 LINE L1 -5786 610 35 634 149 0 0 chr13 39213930 39214024 -80530874 - AluSx SINE Alu -25 284 191 1117 85 0 0 chr13 39214025 39214166 -80530732 - AluSx SINE Alu -171 141 1 1682 76 27 4 chr13 39214728 39214953 -80529945 + MER30 DNA MER1_type 1 230 0 395 264 0 0 chr13 39215162 39215249 -80529649 - L2 LINE L2 0 3272 3186 597 14 0 0 chr13 39215359 39215429 -80529469 + (CATAA)n Simple_repeat Simple_repeat 2 71 0 225 347 93 13 chr13 39215484 39215634 -80529264 - L3 LINE CR1 -223 1354 1193 412 338 111 0 chr13 39215661 39215859 -80529039 + MIR SINE MIR 31 250 -12 1455 172 67 2 chr13 39216340 39216712 -80528186 + MLT2B2 LTR ERVL 2 476 -39 805 157 4 4 chr13 39216726 39216972 -80527926 + (TCCA)n Simple_repeat Simple_repeat 1 246 0 266 134 6 29 chr13 39216985 39217001 -80527897 + MLT2C2 LTR ERVL 426 441 -23 950 143 6 0 chr13 39217001 39217176 -80527722 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 492 62 0 0 chr13 39217182 39217246 -80527652 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 266 134 6 29 chr13 39217246 39217285 -80527613 + MLT2C2 LTR ERVL 446 464 0 231 200 140 0 chr13 39217446 39217546 -80527352 - Charlie7 DNA MER1_type -69 2543 2430 * 240 182 15 61 chr13 39217539 39217605 -80527293 - Charlie7 DNA MER1_type -2511 101 39 211 204 61 0 chr13 39217680 39217729 -80527169 - L2 LINE L2 -16 3256 3205 920 114 8 0 chr13 39218073 39218205 -80526693 - FLAM_C SINE Alu 0 133 1 313 345 0 0 chr13 39218385 39218495 -80526403 + (CA)n Simple_repeat Simple_repeat 1 110 0 220 320 131 0 chr13 39219109 39219231 -80525667 + MIR3 SINE MIR 3 140 -68 219 325 56 19 chr13 39219878 39220038 -80524860 - L2 LINE L2 -312 3001 2836 252 345 81 21 chr13 39220111 39220395 -80524503 - L2 LINE L2 -706 2608 2308 339 353 38 61 chr13 39220437 39220596 -80524302 - MIR SINE MIR -6 256 104 2012 122 36 42 chr13 39220596 39220932 -80523966 + MER1B DNA MER1_type 4 337 0 339 353 38 61 chr13 39220932 39221033 -80523865 - MIR SINE MIR -158 104 2 905 258 107 4 chr13 39221683 39221908 -80522990 - MIR SINE MIR -6 256 9 2645 140 20 40 chr13 39222341 39222392 -80522506 - MER31A LTR ERV1 0 485 434 1725 109 80 14 chr13 39222392 39222668 -80522230 + AluSx SINE Alu 3 296 -16 2645 140 20 40 chr13 39222668 39223110 -80521788 - MER31A LTR ERV1 -51 434 2 211 242 21 116 chr13 39223217 39223312 -80521586 - MIR SINE MIR 0 262 177 * 2262 265 123 45 chr13 39223304 39223847 -80521051 + L2 LINE L2 1938 2437 -876 2301 93 0 0 chr13 39223847 39224157 -80520741 + AluSx SINE Alu 1 310 -2 2262 265 123 45 chr13 39224157 39224875 -80520023 + L2 LINE L2 2437 3305 -8 261 0 0 0 chr13 39224876 39224905 -80519993 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 520 204 0 10 chr13 39224911 39225014 -80519884 - MIR SINE MIR -125 137 36 223 229 0 21 chr13 39225269 39225317 -80519581 - L2 LINE L2 -76 3196 3150 322 312 47 53 chr13 39225504 39225674 -80519224 - L1MDa LINE L1 -3899 2641 2473 1334 94 5 28 chr13 39226055 39226267 -80518631 - AluJb SINE Alu -20 292 86 194 250 0 58 chr13 39228590 39228642 -80516256 + MIR SINE MIR 106 154 -108 276 308 81 75 chr13 39229509 39229869 -80515029 - L2 LINE L2 0 3272 2911 261 269 0 77 chr13 39230394 39230498 -80514400 - MER5A DNA MER1_type 0 189 94 2014 132 148 8 chr13 39231147 39231519 -80513379 - MSTA LTR MaLR -4 424 1 365 209 15 0 chr13 39231793 39231860 -80513038 - MER81 DNA DNA -7 107 40 399 233 157 46 chr13 39231899 39232122 -80512776 + MIR SINE MIR 14 251 -11 466 285 117 35 chr13 39232869 39233537 -80511361 - L2 LINE L2 -87 3226 2231 219 297 72 9 chr13 39234749 39234860 -80510038 + MIR3 SINE MIR 54 171 -37 488 292 77 10 chr13 39235605 39235800 -80509098 + MIR SINE MIR 4 211 -51 1853 128 7 34 chr13 39235957 39236285 -80508613 - AluJo SINE Alu 0 312 3 413 278 75 12 chr13 39236892 39237065 -80507833 - MIR SINE MIR -40 222 39 2330 91 3 0 chr13 39237095 39237403 -80507495 - AluSx SINE Alu -3 309 1 252 282 43 91 chr13 39238713 39238922 -80505976 + MIR SINE MIR 14 212 -50 24 0 0 0 chr13 39239400 39239424 -80505474 + AT_rich Low_complexity Low_complexity 1 24 0 203 268 0 0 chr13 39239974 39240015 -80504883 + polypyrimidine Low_complexity Low_complexity 4 44 0 2406 166 24 7 chr13 39240547 39240964 -80503934 + MSTB LTR MaLR 3 426 0 2216 112 3 6 chr13 39241374 39241687 -80503211 + AluSx SINE Alu 1 312 0 700 235 93 0 chr13 39241779 39241941 -80502957 + MER45A DNA AcHobo 1 177 -1 254 311 78 0 chr13 39241971 39242074 -80502824 - MIR SINE MIR -55 153 43 1053 223 20 24 chr13 39242610 39242857 -80502041 - MIR SINE MIR -1 261 16 228 184 0 0 chr13 39243086 39243135 -80501763 + CT-rich Low_complexity Low_complexity 2 50 0 234 0 0 0 chr13 39243158 39243184 -80501714 + (GA)n Simple_repeat Simple_repeat 2 27 0 297 219 31 0 chr13 39243727 39243791 -80501107 + Charlie8 DNA MER1_type 223 288 -2129 2044 181 83 15 chr13 39243792 39244251 -80500647 - L1MD1 LINE L1 -7 6235 5746 226 200 20 0 chr13 39244290 39244340 -80500558 + Charlie8 DNA MER1_type 1376 1426 -991 223 220 20 0 chr13 39244921 39244971 -80499927 - L2 LINE L2 -5 3267 3217 326 296 57 44 chr13 39245421 39245583 -80499315 - MIR SINE MIR -67 141 1 679 284 167 0 chr13 39245715 39246050 -80498848 - LTR16A LTR ERVL -3 447 57 1027 108 27 0 chr13 39246684 39246832 -80498066 - L1PA7 LINE L1 -1 6153 6002 213 213 0 0 chr13 39246868 39246915 -80497983 + (CA)n Simple_repeat Simple_repeat 2 48 0 180 364 99 0 chr13 39247002 39247123 -80497775 + L2 LINE L2 2920 3052 -220 31 0 0 0 chr13 39247678 39247709 -80497189 + AT_rich Low_complexity Low_complexity 1 31 0 2102 129 20 0 chr13 39247850 39248153 -80496745 + AluSp SINE Alu 1 309 -4 2463 65 0 0 chr13 39248534 39248827 -80496071 + AluY SINE Alu 1 293 -18 2944 81 8 0 chr13 39249422 39249794 -80495104 + THE1C LTR MaLR 1 375 0 3765 126 42 11 chr13 39249985 39250626 -80494272 + L1MA5 LINE L1 5640 6300 0 276 353 8 17 chr13 39250849 39250968 -80493930 + MIR SINE MIR 2 119 -143 186 43 0 0 chr13 39251056 39251079 -80493819 + (CAT)n Simple_repeat Simple_repeat 1 23 0 324 0 0 0 chr13 39251540 39251576 -80493322 + (CA)n Simple_repeat Simple_repeat 2 37 0 199 387 45 9 chr13 39252431 39252542 -80492356 + L2 LINE L2 3144 3258 -14 246 116 0 0 chr13 39252671 39252714 -80492184 + (CA)n Simple_repeat Simple_repeat 1 43 0 537 168 90 13 chr13 39253514 39253669 -80491229 - MER69 DNA AcHobo -708 1818 1652 2332 230 76 10 chr13 39253701 39254296 -80490602 - MER69 DNA AcHobo -537 689 56 225 0 0 0 chr13 39255198 39255223 -80489675 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2419 93 0 3 chr13 39256300 39256602 -80488296 - AluSc SINE Alu -8 301 1 355 271 266 11 chr13 39257522 39257710 -80487188 + MIR SINE MIR 3 238 -24 651 221 51 32 chr13 39257735 39257952 -80486946 + MIR SINE MIR 10 230 -32 1701 147 68 0 chr13 39258046 39258340 -80486558 + AluJb SINE Alu 1 312 0 323 83 0 0 chr13 39258349 39258397 -80486501 + L1MB4 LINE L1 6128 6175 -5 4673 161 25 26 chr13 39258426 39259733 -80485165 + L1MB8 LINE L1 4869 6173 -5 3866 96 13 8 chr13 39259731 39260583 -80484315 - L1PA10 LINE L1 -522 5646 4794 * 3729 79 20 4 chr13 39260583 39261087 -80483811 + L1PA10 LINE L1 5652 6164 -4 236 208 0 52 chr13 39261832 39261909 -80482989 + CT-rich Low_complexity Low_complexity 3 75 0 1042 242 206 32 chr13 39262446 39262908 -80481990 + MLT1G LTR MaLR 47 588 -2 1823 161 3 10 chr13 39263657 39263961 -80480937 - AluJo SINE Alu -2 310 9 1866 135 39 7 chr13 39264065 39264368 -80480530 + AluSx SINE Alu 1 312 0 2243 96 10 0 chr13 39264807 39265098 -80479800 + AluSp SINE Alu 1 294 -19 1763 158 156 15 chr13 39265476 39265881 -80479017 + MLT1C LTR MaLR 6 467 0 287 284 39 0 chr13 39266503 39266605 -80478293 + MIR SINE MIR 92 197 -65 208 239 138 138 chr13 39266701 39266810 -80478088 + L2 LINE L2 3146 3254 -18 678 212 150 49 chr13 39268551 39268938 -80475960 - L1MC5 LINE L1 -30 7931 7506 376 327 133 15 chr13 39269557 39269948 -80474950 + LTR16A1 LTR ERVL 16 452 -5 1169 221 18 27 chr13 39270283 39270661 -80474237 + L2 LINE L2 2676 3050 -263 730 276 98 20 chr13 39270678 39270975 -80473923 + Charlie2 DNA MER1_type 5 324 -2458 1827 202 16 21 chr13 39270978 39271408 -80473490 + Charlie2 DNA MER1_type 1856 2283 -579 723 173 53 132 chr13 39271421 39271511 -80473387 + Charlie2 DNA MER1_type 2478 2574 -288 806 139 46 0 chr13 39271511 39271662 -80473236 + L1MA8 LINE L1 6134 6291 0 723 173 53 132 chr13 39271662 39271784 -80473114 + Charlie2 DNA MER1_type 2574 2655 -207 2306 95 7 0 chr13 39271784 39272078 -80472820 - AluSc SINE Alu -13 296 1 723 173 53 132 chr13 39272078 39272206 -80472692 + Charlie2 DNA MER1_type 2655 2792 -70 5152 221 27 22 chr13 39272216 39272555 -80472343 + L1M4 LINE L1 3308 3644 -2502 1467 88 48 0 chr13 39272555 39272783 -80472115 + L1MA5A LINE L1 6055 6293 -4 5152 221 27 22 chr13 39272783 39273796 -80471102 + L1M4 LINE L1 3644 4666 -1480 1942 146 0 3 chr13 39273814 39274101 -80470797 + AluJb SINE Alu 11 296 -16 546 223 13 19 chr13 39274318 39274475 -80470423 + AluSg/x SINE Alu 141 296 -16 10566 158 51 22 chr13 39274478 39274746 -80470152 + L1MC3 LINE L1 5666 5925 -1860 2152 124 3 13 chr13 39274746 39275060 -80469838 + AluSq SINE Alu 1 311 -2 10566 158 51 22 chr13 39275060 39276579 -80468319 + L1MC3 LINE L1 5925 7521 -264 2461 81 3 0 chr13 39276579 39276887 -80468011 + AluSp SINE Alu 1 309 -4 10566 158 51 22 chr13 39276887 39277112 -80467786 + L1MC3 LINE L1 7521 7738 -47 287 193 0 18 chr13 39277099 39277156 -80467742 + L1M4 LINE L1 4107 4162 -1984 * 2715 221 66 4 chr13 39277199 39277286 -80467612 + L1M4 LINE L1 4155 4235 -1911 270 0 0 0 chr13 39277286 39277316 -80467582 + (CA)n Simple_repeat Simple_repeat 2 31 0 2715 221 66 4 chr13 39277316 39277942 -80466956 + L1M4 LINE L1 4235 4912 -1234 547 205 26 19 chr13 39277942 39278098 -80466800 + L1MB8 LINE L1 6022 6178 0 690 146 31 39 chr13 39278181 39278311 -80466587 + FLAM_A SINE Alu 1 129 -4 183 42 0 0 chr13 39278354 39278378 -80466520 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2630 220 46 86 chr13 39278400 39279215 -80465683 + L1MC5 LINE L1 6377 7143 -818 2028 105 64 17 chr13 39279215 39279511 -80465387 + AluSg SINE Alu 1 310 0 2630 220 46 86 chr13 39279511 39279944 -80464954 + L1MC5 LINE L1 7143 7592 -369 414 216 0 90 chr13 39279940 39280000 -80464898 + L1MB8 LINE L1 6050 6093 -85 * 2259 96 3 0 chr13 39280000 39280291 -80464607 + AluSc SINE Alu 1 292 -17 414 216 0 90 chr13 39280291 39280364 -80464534 + L1MB8 LINE L1 6093 6171 -7 377 172 115 8 chr13 39280377 39280499 -80464399 + L1MC5 LINE L1 7609 7743 -218 1539 100 5 0 chr13 39280638 39280838 -80464060 + AluSx SINE Alu 1 201 -111 338 164 0 0 chr13 39280838 39280899 -80463999 + AluSx SINE Alu 241 301 0 41 0 0 0 chr13 39281058 39281099 -80463799 + AT_rich Low_complexity Low_complexity 1 41 0 2239 102 0 3 chr13 39281404 39281709 -80463189 + AluSx SINE Alu 1 304 0 312 171 14 0 chr13 39281751 39281821 -80463077 + L1MB8 LINE L1 6108 6178 0 304 324 171 0 chr13 39281966 39282142 -80462756 + MIR SINE MIR 2 207 -55 2424 78 3 13 chr13 39282268 39282576 -80462322 + AluSg SINE Alu 1 305 -5 1592 129 3 129 chr13 39283566 39283906 -80460992 - AluJb SINE Alu 0 312 16 1489 168 0 82 chr13 39285102 39285246 -80459652 + AluJo SINE Alu 6 160 -152 678 73 0 31 chr13 39285246 39285362 -80459536 + L1PA5 LINE L1 6055 6154 0 2271 118 0 0 chr13 39285369 39285665 -80459233 + AluSx SINE Alu 1 296 -16 1489 168 0 82 chr13 39285665 39285828 -80459070 + AluJo SINE Alu 166 295 -17 1979 192 60 12 chr13 39285829 39286245 -80458653 - L1MD3 LINE L1 -58 7937 7502 287 257 14 0 chr13 39286245 39286319 -80458579 - MIR SINE MIR -134 128 54 2304 100 0 0 chr13 39286566 39286857 -80458041 + AluSx SINE Alu 1 291 -21 909 205 45 67 chr13 39286857 39287125 -80457773 - L1MC4a LINE L1 -474 7334 7073 569 266 39 0 chr13 39287172 39287300 -80457598 + MER94 DNA DNA 2 134 0 992 191 79 130 chr13 39288559 39288595 -80456303 + L1MC5 LINE L1 7128 7164 -797 2030 129 13 23 chr13 39288595 39288904 -80455994 + AluSx SINE Alu 1 306 -6 992 191 79 130 chr13 39288904 39289070 -80455828 + L1MC5 LINE L1 7164 7337 -624 2363 109 3 0 chr13 39289070 39289382 -80455516 + AluSq SINE Alu 1 313 0 992 191 79 130 chr13 39289382 39289606 -80455292 + L1MC5 LINE L1 7337 7519 -442 2285 87 28 7 chr13 39289606 39289895 -80455003 + AluSg SINE Alu 2 296 -14 992 191 79 130 chr13 39289895 39290059 -80454839 + L1MC5 LINE L1 7519 7690 -271 2710 159 53 121 chr13 39290115 39290942 -80453956 + L1MD2 LINE L1 5038 5821 -343 924 96 80 0 chr13 39290945 39291070 -80453828 + AluSx SINE Alu 1 135 -178 908 186 6 6 chr13 39291102 39291274 -80453624 + AluSx SINE Alu 110 281 -29 261 196 34 97 chr13 39291450 39291597 -80453301 + L1MD2 LINE L1 5828 5983 -1978 5586 120 76 120 chr13 39291597 39292536 -80452362 + Tigger3b DNA MER2_type 1 869 -2159 209 33 33 0 chr13 39292536 39292566 -80452332 + (CTCA)n Simple_repeat Simple_repeat 4 34 0 5586 120 76 120 chr13 39292566 39292914 -80451984 + Tigger3b DNA MER2_type 869 1231 0 261 196 34 97 chr13 39292914 39292970 -80451928 + L1MD2 LINE L1 5983 6041 -1920 2231 86 0 4 chr13 39292970 39293250 -80451648 + AluSp SINE Alu 29 307 -6 261 196 34 97 chr13 39293250 39293325 -80451573 + L1MD2 LINE L1 6041 7928 -33 265 193 0 36 chr13 39293362 39293445 -80451453 + GA-rich Low_complexity Low_complexity 3 82 0 426 239 0 77 chr13 39294417 39294547 -80450351 + L2 LINE L2 3153 3272 0 382 291 44 44 chr13 39294581 39294763 -80450135 - MER5A DNA MER1_type -1 188 7 2267 123 0 0 chr13 39296024 39296333 -80448565 - AluSx SINE Alu -3 309 1 27 92 0 0 chr13 39296495 39296571 -80448327 + AT_rich Low_complexity Low_complexity 1 76 0 1370 154 128 70 chr13 39297613 39297958 -80446940 - MLT1A1 LTR MaLR 0 365 1 346 252 143 25 chr13 39298140 39298259 -80446639 + MER94 DNA DNA 1 133 -1 244 301 88 0 chr13 39298259 39298372 -80446526 - MIR SINE MIR -12 250 128 1089 180 52 16 chr13 39298820 39299185 -80445713 + MER63 DNA MER1_type 3 442 -619 255 307 114 0 chr13 39299219 39299307 -80445591 + LTR8 LTR ERV1 27 124 -567 1428 198 72 20 chr13 39299348 39299696 -80445202 + MER87 LTR ERV1 174 539 -2 539 218 26 32 chr13 39299698 39299854 -80445044 + MER63 DNA MER1_type 790 944 -118 1709 130 0 112 chr13 39300295 39300651 -80444247 + AluSx SINE Alu 1 312 0 333 182 50 50 chr13 39301817 39301916 -80442982 + MER63D DNA MER1_type 313 411 -650 213 121 0 0 chr13 39306621 39306654 -80438244 + (CA)n Simple_repeat Simple_repeat 2 34 0 2359 93 0 0 chr13 39308647 39308947 -80435951 + AluY SINE Alu 1 300 -11 1858 108 104 7 chr13 39309263 39309542 -80435356 + AluSq SINE Alu 1 306 -7 550 197 126 27 chr13 39309962 39310145 -80434753 + MIR SINE MIR 43 243 -19 309 205 134 55 chr13 39313379 39313506 -80431392 + L2 LINE L2 3132 3268 -4 2327 87 0 7 chr13 39314207 39314506 -80430392 - AluSg SINE Alu -13 297 1 268 233 35 70 chr13 39315203 39315289 -80429609 - MIR SINE MIR -70 192 110 2256 106 0 0 chr13 39315515 39315807 -80429091 + AluSg SINE Alu 1 292 -18 267 325 25 0 chr13 39316652 39316732 -80428166 - MIR3 SINE MIR -19 189 108 739 169 0 0 chr13 39317612 39317736 -80427162 - FLAM_C SINE Alu -17 126 3 2195 86 7 4 chr13 39317858 39318136 -80426762 + AluSc SINE Alu 1 279 -30 186 71 0 0 chr13 39318139 39318167 -80426731 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1533 67 0 0 chr13 39319017 39319211 -80425687 + L1PA5 LINE L1 5960 6153 -1 322 26 0 0 chr13 39322174 39322213 -80422685 + L1PA8 LINE L1 6127 6165 -7 1352 192 0 33 chr13 39323094 39323370 -80421528 + AluJo SINE Alu 1 267 -45 324 336 79 0 chr13 39323998 39324138 -80420760 + MIR SINE MIR 12 162 -100 224 170 19 0 chr13 39325814 39325867 -80419031 + (CAGAA)n Simple_repeat Simple_repeat 2 55 0 252 289 13 0 chr13 39326749 39326825 -80418073 + MER103 DNA DNA 13 89 -77 559 294 20 15 chr13 39328436 39328640 -80416258 + MIR SINE MIR 12 216 -46 12714 120 35 50 chr13 39330118 39332299 -80412599 - Tigger1 DNA MER2_type 0 2418 272 1654 162 0 80 chr13 39332484 39332798 -80412100 + AluJb SINE Alu 1 289 -23 270 0 0 0 chr13 39333486 39333516 -80411382 + (CA)n Simple_repeat Simple_repeat 1 30 0 391 308 140 14 chr13 39334250 39334464 -80410434 - MER112 DNA MER1_type -17 243 3 2027 142 0 3 chr13 39336965 39337260 -80407638 + AluSx SINE Alu 1 294 -18 1975 140 0 17 chr13 39339856 39340149 -80404749 - AluSx SINE Alu -24 288 1 1943 156 0 13 chr13 39341162 39341470 -80403428 - AluJo SINE Alu -8 304 1 414 259 71 0 chr13 39342519 39342631 -80402267 - MIR3 SINE MIR -52 156 37 1887 145 3 7 chr13 39342841 39343124 -80401774 - AluJo SINE Alu -25 287 6 210 200 346 85 chr13 39343473 39343603 -80401295 - MER5A DNA MER1_type 0 189 26 516 174 10 0 chr13 39343612 39343710 -80401188 - L1MA5 LINE L1 0 6300 6202 249 56 111 0 chr13 39343907 39343943 -80400955 - L1MA6 LINE L1 -101 6199 6160 180 0 0 0 chr13 39344081 39344101 -80400797 + (T)n Simple_repeat Simple_repeat 1 20 0 357 235 174 0 chr13 39344628 39344726 -80400172 + MIR SINE MIR 47 161 -101 2357 108 0 9 chr13 39397511 39397826 -80347072 - AluSx SINE Alu 0 312 1 220 316 118 15 chr13 39398069 39398205 -80346693 + L2 LINE L2 2716 2865 -449 204 313 112 45 chr13 39398412 39398546 -80346352 + L2 LINE L2 3125 3267 -5 197 286 143 42 chr13 39398675 39398794 -80346104 - L2 LINE L2 -1 3271 3141 265 341 22 71 chr13 39399008 39399190 -80345708 - MIR3 SINE MIR -17 191 19 338 204 64 30 chr13 39399608 39399749 -80345149 + MLT1H LTR MaLR 250 549 0 1606 190 133 3 chr13 39400948 39401317 -80343581 + Charlie4a DNA MER1_type 5 421 -87 26 0 0 0 chr13 39401872 39401898 -80343000 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr13 39402531 39402555 -80342343 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1690 166 16 7 chr13 39403001 39403308 -80341590 + AluJb SINE Alu 1 310 -2 1623 143 136 10 chr13 39403839 39404140 -80340758 + MER44D DNA MER2_type 1 609 0 840 282 145 28 chr13 39406295 39406466 -80338432 - L2 LINE L2 -3 3310 3161 2009 98 36 0 chr13 39406466 39406740 -80338158 + AluSx SINE Alu 1 284 -28 441 0 0 0 chr13 39406740 39406789 -80338109 + (CATA)n Simple_repeat Simple_repeat 2 50 0 840 282 145 28 chr13 39406789 39407366 -80337532 - L2 LINE L2 -151 3162 2469 2241 83 38 0 chr13 39408375 39408665 -80336233 + AluSp SINE Alu 1 301 -12 1627 148 37 30 chr13 39409289 39409587 -80335311 - AluJb SINE Alu -12 300 1 2097 108 9 32 chr13 39410216 39410531 -80334367 + AluSq SINE Alu 1 308 -5 2233 102 3 0 chr13 39412011 39412306 -80332592 - AluSx SINE Alu -13 299 4 232 298 99 33 chr13 39413863 39413984 -80330914 + MIR SINE MIR 134 262 0 631 266 48 29 chr13 39414794 39415001 -80329897 + L3 LINE CR1 937 1147 -430 1604 141 59 59 chr13 39415031 39415337 -80329561 + AluJo SINE Alu 1 306 -6 198 0 0 0 chr13 39415529 39415551 -80329347 + (A)n Simple_repeat Simple_repeat 1 22 0 423 62 62 0 chr13 39416806 39416871 -80328027 + MER41B LTR ERV1 481 549 -86 200 35 35 0 chr13 39417182 39417211 -80327687 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 805 139 9 0 chr13 39417213 39417328 -80327570 - FLAM_C SINE Alu -17 116 1 587 275 85 19 chr13 39418504 39418762 -80326136 + L1MC4 LINE L1 7501 7775 -267 1272 131 10 5 chr13 39418762 39418961 -80325937 + AluSq SINE Alu 1 200 -113 1829 160 4 0 chr13 39419151 39419432 -80325466 - AluSx SINE Alu -30 282 1 337 200 76 38 chr13 39419796 39419901 -80324997 + MER34 LTR ERV1 434 542 0 28 29 0 0 chr13 39421376 39421411 -80323487 + AT_rich Low_complexity Low_complexity 1 35 0 4435 86 2 9 chr13 39421635 39422193 -80322705 - MER41A LTR ERV1 0 554 1 2068 118 0 60 chr13 39422469 39422800 -80322098 - AluSx SINE Alu -1 311 1 712 205 0 0 chr13 39422823 39422950 -80321948 - FLAM_A SINE Alu 0 142 16 229 153 31 20 chr13 39423365 39423463 -80321435 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 605 109 43 0 chr13 39424015 39424107 -80320791 - AluSg/x SINE Alu -9 303 208 1100 108 13 0 chr13 39424107 39424265 -80320633 - AluSq SINE Alu -153 160 1 2188 113 3 3 chr13 39424694 39424995 -80319903 - AluSg SINE Alu -9 301 1 2065 113 0 78 chr13 39425919 39426254 -80318644 + AluSg1 SINE Alu 1 309 0 2102 111 3 44 chr13 39426777 39427093 -80317805 + AluSx SINE Alu 1 303 -9 1662 163 37 23 chr13 39427358 39427658 -80317240 - AluSx SINE Alu -6 306 3 1824 81 0 13 chr13 39428557 39428793 -80316105 - AluY SINE Alu -15 296 64 1880 146 0 50 chr13 39429034 39429357 -80315541 - AluSx SINE Alu -5 307 1 303 296 95 37 chr13 39430067 39430256 -80314642 - L2 LINE L2 -837 2477 2278 2477 72 0 10 chr13 39430451 39430757 -80314141 + AluY SINE Alu 1 303 -8 2340 90 30 0 chr13 39430767 39431068 -80313830 + AluSg SINE Alu 1 310 0 866 179 0 19 chr13 39432510 39432713 -80312185 + AluSg/x SINE Alu 127 326 0 1875 127 3 68 chr13 39432998 39433320 -80311578 - AluSx SINE Alu -11 301 1 2259 112 3 0 chr13 39433615 39433920 -80310978 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr13 39434926 39434955 -80309943 + AT_rich Low_complexity Low_complexity 1 29 0 2226 72 0 0 chr13 39435716 39435995 -80308903 + AluSc SINE Alu 1 279 -30 386 222 48 56 chr13 39436233 39436359 -80308539 - L1 LINE L1 -1153 4993 4867 2224 136 107 3 chr13 39436359 39436741 -80308157 - MSTC LTR MaLR 0 428 7 2845 102 6 3 chr13 39436741 39437104 -80307794 + THE1B LTR MaLR 1 364 0 519 281 45 30 chr13 39437107 39437374 -80307524 - L1 LINE L1 -1270 4876 4606 2325 90 3 0 chr13 39437379 39437679 -80307219 + AluSq SINE Alu 5 305 -8 324 305 0 0 chr13 39437689 39437784 -80307114 + L1MC4 LINE L1 7770 7864 -178 351 248 64 8 chr13 39437861 39438008 -80306890 + L1MC4 LINE L1 5936 8042 0 536 240 55 7 chr13 39438035 39438181 -80306717 + L1MA10 LINE L1 6175 6327 -7 306 0 0 0 chr13 39438181 39438215 -80306683 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 158 42 0 chr13 39438451 39438499 -80306399 + MIR SINE MIR 97 148 -62 2484 64 3 0 chr13 39438969 39439266 -80305632 - AluSp SINE Alu -15 298 1 1583 144 31 0 chr13 39439324 39439553 -80305345 - MER46A DNA MER2_type 0 236 1 2000 124 13 3 chr13 39440197 39440495 -80304403 + AluSx SINE Alu 1 301 -11 1172 183 8 12 chr13 39441090 39441331 -80303567 + L1MC/D LINE L1 4948 5187 -959 2224 150 136 20 chr13 39441332 39441780 -80303118 + L1MB3 LINE L1 5684 6183 0 2323 104 0 0 chr13 39441814 39442121 -80302777 + AluY SINE Alu 1 307 -4 2622 183 44 18 chr13 39442121 39442618 -80302280 - MST-int LTR MaLR -49 1686 1089 842 196 20 110 chr13 39442609 39442778 -80302120 - L1MC4a LINE L1 -857 6951 6768 * 234 0 0 0 chr13 39442778 39442804 -80302094 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2059 124 0 0 chr13 39442807 39443080 -80301818 - AluSg SINE Alu -30 280 8 842 196 20 110 chr13 39443080 39443151 -80301747 - L1MC4a LINE L1 -1042 6766 6729 1384 121 0 73 chr13 39443152 39443384 -80301514 - AluSg/x SINE Alu -13 299 85 989 99 0 112 chr13 39443384 39443545 -80301353 - AluSq SINE Alu -63 250 108 953 138 0 0 chr13 39443645 39443775 -80301123 - AluSq SINE Alu -182 130 1 2191 133 3 0 chr13 39443786 39444094 -80300804 - AluSx SINE Alu -3 309 1 279 178 0 0 chr13 39444109 39444154 -80300744 - L1MC4a LINE L1 -1086 6722 6678 232 282 219 60 chr13 39444467 39444501 -80300397 + L1MC/D LINE L1 5385 5412 -2396 2247 108 0 0 chr13 39444501 39444825 -80300073 + AluY SINE Alu 1 311 0 232 282 219 60 chr13 39444825 39444905 -80299993 + L1MC/D LINE L1 5412 5478 -2330 2166 132 0 3 chr13 39444905 39445209 -80299689 + AluSx SINE Alu 1 303 -9 232 282 219 60 chr13 39445209 39445357 -80299541 + L1MC/D LINE L1 5478 5601 -2207 246 81 0 0 chr13 39445357 39445394 -80299504 + (TG)n Simple_repeat Simple_repeat 1 37 0 232 282 219 60 chr13 39445394 39445462 -80299436 + L1MC/D LINE L1 5601 5770 -2038 237 281 53 111 chr13 39445493 39445664 -80299234 - L2 LINE L2 -252 3061 2901 184 255 21 0 chr13 39445812 39445859 -80299039 + L2 LINE L2 3265 3312 -1 2652 154 28 9 chr13 39445934 39446394 -80298504 + Charlie4a DNA MER1_type 37 505 -3 1534 252 44 9 chr13 39446598 39447031 -80297867 + L1ME1 LINE L1 5476 5923 -243 8040 33 0 0 chr13 39447036 39448059 -80296839 - L1PA3 LINE L1 0 6155 5133 7869 40 0 1 chr13 39448059 39449002 -80295896 + L1PA3 LINE L1 4220 5161 -985 374 230 82 59 chr13 39449131 39449266 -80295632 + L1MA10 LINE L1 6192 6329 -5 1999 134 3 3 chr13 39449794 39450125 -80294773 - AluSq SINE Alu 0 313 1 26 50 0 0 chr13 39450449 39450489 -80294409 + AT_rich Low_complexity Low_complexity 1 40 0 551 259 129 40 chr13 39450703 39450744 -80294154 + MIR SINE MIR 13 49 -213 2026 140 0 3 chr13 39450744 39451051 -80293847 + AluSx SINE Alu 1 306 0 551 259 129 40 chr13 39451051 39451232 -80293666 + MIR SINE MIR 49 256 -6 1450 186 42 11 chr13 39451678 39451963 -80292935 + AluJb SINE Alu 1 294 -18 2355 119 0 0 chr13 39452101 39452413 -80292485 + AluSx SINE Alu 1 312 0 230 231 100 32 chr13 39452927 39453036 -80291862 - MIR SINE MIR -62 146 40 1960 99 64 7 chr13 39454843 39455126 -80289772 + AluSp SINE Alu 1 299 -14 429 56 0 0 chr13 39455335 39455389 -80289509 - Alu SINE Alu -13 297 244 21 0 0 0 chr13 39457164 39457185 -80287713 + AT_rich Low_complexity Low_complexity 1 21 0 723 275 29 59 chr13 39457191 39457319 -80287579 - L1MC/D LINE L1 -1992 5816 5686 2020 44 48 0 chr13 39457319 39457569 -80287329 + AluY SINE Alu 41 302 -9 723 275 29 59 chr13 39457569 39457713 -80287185 - L1MC/D LINE L1 -2122 5686 5552 316 390 70 6 chr13 39457733 39457905 -80286993 - MIR3 SINE MIR -6 202 20 272 206 41 14 chr13 39457917 39457990 -80286908 - L1ME4a LINE L1 -75 6046 5972 1955 133 11 0 chr13 39458066 39458352 -80286546 + AluSx SINE Alu 1 289 -23 195 69 0 0 chr13 39458357 39458386 -80286512 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 192 97 0 0 chr13 39458455 39458486 -80286412 + (T)n Simple_repeat Simple_repeat 1 31 0 228 211 0 70 chr13 39459245 39459302 -80285596 - L2 LINE L2 -2 3270 3218 385 272 9 0 chr13 39459802 39459916 -80284982 + L1ME4a LINE L1 5716 5830 -291 1799 140 0 26 chr13 39459916 39460188 -80284710 + AluSx SINE Alu 1 265 -47 390 307 8 0 chr13 39461453 39461580 -80283318 - MIR SINE MIR -48 214 87 653 173 136 0 chr13 39462436 39462546 -80282352 + FLAM_A SINE Alu 3 127 -6 1705 120 90 0 chr13 39462556 39462822 -80282076 + AluSx SINE Alu 1 290 -22 2041 114 10 16 chr13 39464237 39464544 -80280354 + AluSx SINE Alu 7 311 -1 361 244 71 62 chr13 39464544 39464688 -80280210 + MIR SINE MIR 41 191 -65 765 169 0 59 chr13 39464691 39464820 -80280078 + AluJo/FLAM SINE Alu 2 124 -188 1928 112 98 4 chr13 39464820 39465097 -80279801 - AluSq SINE Alu -10 303 1 500 174 98 45 chr13 39465220 39465352 -80279546 - MIR SINE MIR -27 235 97 2247 79 0 4 chr13 39465464 39465744 -80279154 + AluY SINE Alu 1 279 -32 539 283 100 12 chr13 39465907 39466147 -80278751 - MIR SINE MIR 0 262 2 2241 93 0 17 chr13 39467214 39467514 -80277384 + AluSq SINE Alu 1 295 -18 827 88 0 0 chr13 39467747 39467849 -80277049 - AluS SINE Alu -211 102 1 2005 124 7 7 chr13 39467850 39468132 -80276766 - AluSq SINE Alu -31 282 1 313 75 57 19 chr13 39468132 39468185 -80276713 + MSTB-int LTR MaLR 1526 1580 0 2442 120 85 22 chr13 39468185 39468517 -80276381 + MSTB LTR MaLR 1 364 -62 2500 85 0 0 chr13 39468517 39468822 -80276076 - AluSx SINE Alu -7 305 1 2442 120 85 22 chr13 39468822 39468890 -80276008 + MSTB LTR MaLR 364 426 0 2650 198 118 31 chr13 39468892 39469576 -80275322 + L1MC4a LINE L1 6944 7708 -100 2046 107 38 0 chr13 39469576 39469865 -80275033 - AluSx SINE Alu -12 300 1 2650 198 118 31 chr13 39469865 39469975 -80274923 + L1MC4a LINE L1 7708 7807 -1 648 102 102 8 chr13 39469994 39470112 -80274786 + L1MA9 LINE L1 6162 6290 -22 27 62 0 0 chr13 39470112 39470160 -80274738 + AT_rich Low_complexity Low_complexity 1 48 0 15595 86 8 2 chr13 39470347 39473151 -80271747 - L1PA7 LINE L1 -1 6153 3332 33483 79 7 10 chr13 39473251 39478658 -80266240 + L1PA5 LINE L1 767 6154 0 2157 121 10 3 chr13 39479417 39479723 -80265175 - AluSg SINE Alu -2 308 1 2277 100 3 3 chr13 39479729 39480040 -80264858 - AluSx SINE Alu 0 312 2 2143 118 10 20 chr13 39480084 39480390 -80264508 - AluSq SINE Alu -10 303 1 975 127 0 0 chr13 39480419 39480553 -80264345 - AluSq/x SINE Alu -179 134 1 234 0 0 0 chr13 39480751 39480777 -80264121 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1174 137 6 0 chr13 39480777 39480953 -80263945 - AluJb SINE Alu -4 308 129 396 0 0 0 chr13 39480977 39481021 -80263877 + (CTTG)n Simple_repeat Simple_repeat 2 45 0 2172 114 0 0 chr13 39481040 39481348 -80263550 - AluSg SINE Alu 0 310 1 1596 92 0 32 chr13 39481372 39481452 -80263446 - AluSc SINE Alu -98 211 130 2273 72 3 62 chr13 39481452 39481773 -80263125 - AluY SINE Alu -7 304 3 1596 92 0 32 chr13 39481773 39481909 -80262989 - AluSc SINE Alu -179 130 2 36 23 0 0 chr13 39482294 39482337 -80262561 + AT_rich Low_complexity Low_complexity 1 43 0 1136 88 0 0 chr13 39482354 39482490 -80262408 - AluSq/x SINE Alu -171 141 6 2223 113 0 3 chr13 39482963 39483264 -80261634 - AluSq SINE Alu -13 300 1 419 293 161 0 chr13 39483632 39483806 -80261092 - MIR SINE MIR 0 262 61 840 160 0 0 chr13 39483881 39484006 -80260892 + FLAM_C SINE Alu 1 125 -18 2870 10 0 0 chr13 39484209 39484518 -80260380 - AluYa5 SINE Alu -2 309 1 879 206 0 0 chr13 39484520 39484680 -80260218 - FRAM SINE Alu -16 160 1 213 276 35 0 chr13 39485224 39485282 -80259616 - L2 LINE L2 -9 3263 3204 2332 122 0 0 chr13 39485507 39485819 -80259079 - AluSx SINE Alu 0 312 1 826 167 17 69 chr13 39486129 39486303 -80258595 + AluJb SINE Alu 137 301 -11 2238 92 31 0 chr13 39486694 39486986 -80257912 - AluSx SINE Alu -11 301 1 4048 185 8 19 chr13 39487042 39487843 -80257055 + L1 LINE L1 4243 5034 -1112 1746 169 10 24 chr13 39487854 39488150 -80256748 + AluJb SINE Alu 1 292 -20 207 162 0 0 chr13 39488150 39488187 -80256711 + G-rich Low_complexity Low_complexity 1 37 0 1317 173 38 21 chr13 39488258 39488495 -80256403 + AluJo SINE Alu 3 243 -69 1771 82 5 0 chr13 39488497 39488716 -80256182 + AluSp SINE Alu 76 295 -18 5007 141 93 38 chr13 39488717 39488810 -80256088 + L1PA16 LINE L1 5183 5269 -897 2167 127 0 0 chr13 39488810 39489101 -80255797 + AluSg SINE Alu 3 293 -17 5007 141 93 38 chr13 39489101 39489451 -80255447 + L1PA16 LINE L1 5269 5598 -568 2316 107 3 3 chr13 39489451 39489759 -80255139 + AluSp SINE Alu 1 308 -5 5007 141 93 38 chr13 39489759 39489923 -80254975 + L1PA16 LINE L1 5598 5751 -415 2150 122 7 0 chr13 39489923 39490217 -80254681 + AluSp SINE Alu 1 296 -17 5007 141 93 38 chr13 39490217 39490541 -80254357 + L1PA16 LINE L1 5751 6157 -9 260 207 216 36 chr13 39490735 39490846 -80254052 - MIR SINE MIR -14 248 118 2125 127 0 3 chr13 39490847 39491146 -80253752 - AluSx SINE Alu -14 298 1 1730 132 69 31 chr13 39491598 39491887 -80253011 + AluJo SINE Alu 1 300 -12 246 32 0 0 chr13 39491933 39491964 -80252934 + (CA)n Simple_repeat Simple_repeat 2 32 0 2488 14 41 7 chr13 39492326 39492616 -80252282 + AluY SINE Alu 1 300 -11 2280 92 7 0 chr13 39492665 39492959 -80251939 + AluSx SINE Alu 1 296 -16 727 203 7 7 chr13 39492973 39493116 -80251782 - AluJb SINE Alu -2 310 168 3825 163 49 57 chr13 39493860 39494702 -80250196 - L1MB8 LINE L1 0 6178 5331 1781 125 121 7 chr13 39494702 39494983 -80249915 - AluSp SINE Alu 0 313 1 1633 146 0 0 chr13 39494984 39495231 -80249667 - AluSx SINE Alu -8 304 58 3825 163 49 57 chr13 39495231 39495353 -80249545 - L1MB8 LINE L1 -846 5332 5207 1621 166 3 3 chr13 39495355 39495638 -80249260 - AluY SINE Alu -12 299 17 389 273 47 16 chr13 39495818 39495946 -80248952 + MLT1J2 LTR MaLR 262 393 -57 13569 21 0 0 chr13 39495952 39498206 -80246692 - L1PA2 LINE L1 0 6155 3902 532 185 267 56 chr13 39498776 39498938 -80245960 + MIR SINE MIR 2 215 -47 2274 79 0 24 chr13 39498938 39499279 -80245619 + AluSx SINE Alu 1 334 0 189 176 88 0 chr13 39499279 39499313 -80245585 + L2 LINE L2 3213 3249 -23 1882 172 33 44 chr13 39499508 39499897 -80245001 - MLT1B LTR MaLR -5 385 1 21 0 0 0 chr13 39500080 39500101 -80244797 + AT_rich Low_complexity Low_complexity 1 21 0 817 188 0 7 chr13 39500313 39500451 -80244447 + AluJo SINE Alu 3 139 -173 2256 111 3 0 chr13 39500455 39500762 -80244136 + AluSg SINE Alu 1 308 -2 27 0 0 0 chr13 39500763 39500790 -80244108 + AT_rich Low_complexity Low_complexity 1 27 0 837 176 0 0 chr13 39500791 39500922 -80243976 + AluSq/x SINE Alu 2 132 -180 2170 89 10 29 chr13 39500924 39501237 -80243661 + AluSx SINE Alu 1 307 -5 2200 108 0 40 chr13 39501239 39501375 -80243523 + AluSq SINE Alu 1 141 -172 2549 41 0 7 chr13 39501375 39501669 -80243229 + AluY SINE Alu 1 292 -19 2200 108 0 40 chr13 39501669 39501856 -80243042 + AluSq SINE Alu 141 311 -2 2154 112 0 3 chr13 39502378 39502673 -80242225 + AluSq SINE Alu 1 294 -19 977 118 0 15 chr13 39502861 39502996 -80241902 - FLAM_C SINE Alu 0 133 1 2012 154 0 3 chr13 39503417 39503722 -80241176 + AluJo SINE Alu 1 304 -8 194 183 83 17 chr13 39504039 39504099 -80240799 - MIR SINE MIR -43 219 156 14347 134 75 113 chr13 39504706 39505910 -80238988 - L1P LINE L1 -2894 3252 2003 2356 87 0 19 chr13 39505910 39506222 -80238676 + AluSg SINE Alu 5 310 0 14347 134 75 113 chr13 39506222 39508400 -80236498 - L1P LINE L1 -4143 2003 1 486 277 77 23 chr13 39508491 39508679 -80236219 + MIR3 SINE MIR 2 208 0 2392 102 0 6 chr13 39508852 39509165 -80235733 - AluSx SINE Alu -1 311 1 1915 160 3 0 chr13 39510270 39510564 -80234334 - AluJo SINE Alu -17 295 1 2602 122 45 47 chr13 39510571 39510919 -80233979 - L1MB4 LINE L1 0 6180 5832 2157 131 3 3 chr13 39510919 39511225 -80233673 - AluSg SINE Alu -4 306 1 2602 122 45 47 chr13 39511225 39511344 -80233554 - L1MB4 LINE L1 -348 5832 5714 1855 107 0 93 chr13 39511738 39512077 -80232821 + AluSx SINE Alu 1 310 0 1979 121 3 3 chr13 39512149 39512478 -80232420 + AluSx SINE Alu 1 329 0 1166 164 50 142 chr13 39512689 39513091 -80231807 + MLT1A1 LTR MaLR 1 365 0 243 347 10 80 chr13 39513191 39513390 -80231508 - L2 LINE L2 -1 3271 3087 270 268 42 0 chr13 39513451 39513522 -80231376 + L2 LINE L2 3199 3272 0 222 243 264 43 chr13 39514097 39514237 -80230661 - MIR SINE MIR -61 201 31 216 0 0 0 chr13 39514296 39514320 -80230578 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1436 134 21 134 chr13 39514323 39514659 -80230239 - AluSc SINE Alu -1 298 1 844 225 70 65 chr13 39514790 39515024 -80229874 - L1MEc LINE L1 -864 5351 5113 2292 109 0 10 chr13 39515024 39515326 -80229572 - AluSx SINE Alu -13 299 1 844 225 70 65 chr13 39515326 39515505 -80229393 - L1MEc LINE L1 -1102 5113 4936 2224 136 107 3 chr13 39515505 39515887 -80229011 - MSTC LTR MaLR 0 428 7 2845 102 6 3 chr13 39515887 39516250 -80228648 + THE1B LTR MaLR 1 364 0 716 272 39 58 chr13 39516253 39516521 -80228377 - L1MEc LINE L1 -1270 4945 4684 2148 116 7 0 chr13 39516521 39516814 -80228084 + AluSq SINE Alu 2 296 -17 716 272 39 58 chr13 39516814 39516909 -80227989 - L1MEc LINE L1 -1531 4684 4589 1879 154 7 3 chr13 39516944 39517230 -80227668 - AluSx SINE Alu -25 287 1 323 190 0 25 chr13 39517306 39517385 -80227513 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 2226 91 3 3 chr13 39517385 39517672 -80227226 - AluSc SINE Alu -22 287 1 380 179 77 17 chr13 39517675 39517792 -80227106 - L1MEc LINE L1 -1701 4514 4391 1440 233 106 58 chr13 39517894 39518392 -80226506 - MLT1E LTR MaLR -2 591 70 740 289 260 17 chr13 39518443 39519100 -80225798 - L1MEc LINE L1 -1988 4227 3411 796 224 21 0 chr13 39519173 39519316 -80225582 - FRAM SINE Alu -30 146 1 1387 150 109 19 chr13 39519630 39519897 -80225001 + AluJb SINE Alu 1 291 -21 21 0 0 0 chr13 39519921 39519942 -80224956 + AT_rich Low_complexity Low_complexity 1 21 0 2355 102 0 3 chr13 39519993 39520298 -80224600 - AluSx SINE Alu -8 304 1 620 271 201 24 chr13 39520305 39520807 -80224091 - L1MEc LINE L1 -3241 2974 2384 1962 125 11 0 chr13 39520885 39521202 -80223696 + AluSq SINE Alu 1 320 0 289 73 0 0 chr13 39521372 39521413 -80223485 - LTR60 LTR ERV1 0 586 546 240 250 161 27 chr13 39521472 39521584 -80223314 - L1MEc LINE L1 -4653 1743 1617 319 200 15 0 chr13 39521651 39521716 -80223182 - L1MEc LINE L1 -3435 2780 2715 1931 159 0 3 chr13 39521731 39522033 -80222865 - AluSx SINE Alu -11 301 1 365 263 5 54 chr13 39522159 39522345 -80222553 + C-rich Low_complexity Low_complexity 2 178 0 2318 41 44 7 chr13 39523142 39523436 -80221462 + AluY SINE Alu 1 305 -6 2163 93 0 23 chr13 39523443 39523753 -80221145 + AluSg SINE Alu 1 303 -7 386 238 87 0 chr13 39524053 39524179 -80220719 - L1MEc LINE L1 -5282 923 787 2104 132 3 7 chr13 39524308 39524612 -80220286 + AluSx SINE Alu 1 303 -9 1685 192 7 0 chr13 39524612 39524903 -80219995 - AluJo SINE Alu -19 293 1 201 268 0 0 chr13 39525089 39525145 -80219753 + (TA)n Simple_repeat Simple_repeat 2 57 0 471 290 50 73 chr13 39525787 39525839 -80219059 + MIR SINE MIR 3 55 -207 2319 97 0 3 chr13 39525839 39526138 -80218760 - AluSx SINE Alu -14 298 1 471 290 50 73 chr13 39526138 39526344 -80218554 + MIR SINE MIR 55 255 -7 1880 146 4 11 chr13 39526349 39526629 -80218269 + AluSx SINE Alu 1 278 -34 2298 95 3 0 chr13 39526674 39526968 -80217930 - AluSq SINE Alu -18 295 1 687 226 120 20 chr13 39526994 39527088 -80217810 + L1MDa LINE L1 2348 2431 -4253 2109 120 31 0 chr13 39527088 39527379 -80217519 + AluJb SINE Alu 1 300 -12 687 226 120 20 chr13 39527379 39527398 -80217500 + L1MDa LINE L1 2431 2447 -4237 2214 106 3 37 chr13 39527398 39527719 -80217179 + AluSg SINE Alu 1 310 0 687 226 120 20 chr13 39527719 39527973 -80216925 + L1MDa LINE L1 2447 2792 -3892 183 42 0 0 chr13 39528027 39528051 -80216847 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 528 346 49 11 chr13 39528220 39528486 -80216412 + HAL1 LINE L1 618 893 -1614 421 337 34 17 chr13 39528487 39528561 -80216337 + MLT1J LTR MaLR 3 74 -335 1782 154 10 29 chr13 39528561 39528867 -80216031 + AluJo SINE Alu 1 300 -12 421 337 34 17 chr13 39528867 39529001 -80215897 + MLT1J LTR MaLR 74 174 -235 326 116 0 0 chr13 39529011 39529054 -80215844 + Alu SINE Alu 1 43 -265 2522 81 3 0 chr13 39529104 39529413 -80215485 - AluSq SINE Alu -3 310 1 522 239 64 32 chr13 39529414 39529753 -80215145 + HAL1 LINE L1 1055 1496 -1011 1480 173 48 17 chr13 39529796 39530091 -80214807 + AluJb SINE Alu 1 304 -8 870 175 0 0 chr13 39530092 39530229 -80214669 + AluSg/x SINE Alu 137 273 -39 435 275 222 44 chr13 39530229 39530684 -80214214 + HAL1 LINE L1 1531 2066 -441 1788 145 25 7 chr13 39530728 39531011 -80213887 + AluJo SINE Alu 1 288 -24 43593 33 23 2 chr13 39531029 39537055 -80207843 + L1PA2 LINE L1 1 6151 -4 311 218 0 13 chr13 39537115 39537193 -80207705 + HAL1 LINE L1 2129 2205 -302 248 245 177 27 chr13 39537218 39537365 -80207533 + HAL1 LINE L1 2309 2477 -30 545 290 119 10 chr13 39537418 39537802 -80207096 + L1MC4a LINE L1 5188 5614 -630 439 245 54 44 chr13 39537863 39537998 -80206900 + L1MC4a LINE L1 5750 5882 -239 414 0 0 0 chr13 39537998 39538044 -80206854 + (CA)n Simple_repeat Simple_repeat 2 47 0 439 245 54 44 chr13 39538044 39538169 -80206729 + L1MC4a LINE L1 5882 6016 -105 29 28 0 0 chr13 39538243 39538279 -80206619 + AT_rich Low_complexity Low_complexity 1 36 0 6472 121 4 0 chr13 39538950 39539139 -80205759 + L1PA15 LINE L1 4928 5115 -1050 2123 117 0 13 chr13 39539139 39539439 -80205459 + AluSq SINE Alu 1 296 -17 6472 121 4 0 chr13 39539439 39540481 -80204417 + L1PA15 LINE L1 5115 6165 0 1818 100 3 147 chr13 39540662 39541023 -80203875 - AluSx SINE Alu -3 309 1 2145 137 0 0 chr13 39541025 39541331 -80203567 - AluSx SINE Alu -6 306 1 2166 103 3 0 chr13 39541340 39541661 -80203237 - AluSq SINE Alu 0 322 1 595 246 15 20 chr13 39541661 39541856 -80203042 - L1M4 LINE L1 -864 5282 5089 482 225 8 62 chr13 39542976 39543105 -80201793 - MIR SINE MIR -54 208 87 1201 138 0 6 chr13 39543176 39543357 -80201541 - AluSg/x SINE Alu 0 310 131 285 242 110 11 chr13 39543473 39543564 -80201334 - MIR SINE MIR -64 144 45 1834 99 134 0 chr13 39543704 39543966 -80200932 + AluSx SINE Alu 1 297 -5 2256 108 13 0 chr13 39544257 39544562 -80200336 - AluSq SINE Alu -4 309 1 279 250 125 11 chr13 39545828 39545916 -80198982 - MIR SINE MIR -16 246 149 2400 232 26 42 chr13 39546014 39546655 -80198243 + L1ME1 LINE L1 5531 6161 -5 332 43 22 0 chr13 39546851 39546897 -80198001 + (TA)n Simple_repeat Simple_repeat 2 48 0 353 322 41 7 chr13 39546899 39547045 -80197853 - L1ME LINE L1 -356 5765 5615 321 266 159 18 chr13 39547433 39547546 -80197352 - MIR SINE MIR -10 252 124 188 293 67 40 chr13 39547546 39547621 -80197277 - MIR3 SINE MIR -129 79 3 294 298 0 12 chr13 39547725 39547809 -80197089 - L2 LINE L2 0 3313 3231 2290 106 13 0 chr13 39548130 39548432 -80196466 - AluSq SINE Alu -7 306 1 1180 239 19 0 chr13 39548845 39549105 -80195793 - AluJo SINE Alu -9 303 39 1974 158 87 14 chr13 39549623 39549991 -80194907 + LTR57 LTR ERVL 17 411 0 2195 119 0 16 chr13 39550855 39551166 -80193732 + AluSq SINE Alu 1 306 -7 217 243 0 0 chr13 39551499 39551536 -80193362 - L2 LINE L2 -12 3260 3224 * 424 289 98 5 chr13 39551504 39551698 -80193200 - MIR SINE MIR -11 251 40 34 55 0 0 chr13 39551880 39551935 -80192963 + AT_rich Low_complexity Low_complexity 1 55 0 1617 115 0 0 chr13 39553549 39553775 -80191123 - AluY SINE Alu -8 303 78 2064 44 4 4 chr13 39553875 39554123 -80190775 + AluY SINE Alu 52 299 -12 1121 192 5 0 chr13 39554123 39554321 -80190577 - AluJo SINE Alu -113 199 1 2269 100 3 25 chr13 39555118 39555437 -80189461 + AluSx SINE Alu 1 312 0 566 173 209 0 chr13 39555791 39555930 -80188968 + L1ME2 LINE L1 5726 5893 -273 1224 131 11 11 chr13 39555936 39556119 -80188779 + AluSg/x SINE Alu 120 302 -8 607 260 130 18 chr13 39556119 39556342 -80188556 + L1ME2 LINE L1 5907 6154 -10 318 305 39 8 chr13 39556369 39556497 -80188401 + L1MC5 LINE L1 7782 7913 -48 729 216 0 8 chr13 39556595 39556729 -80188169 - FLAM_A SINE Alu 0 133 1 1651 155 34 7 chr13 39556955 39557252 -80187646 + AluJo SINE Alu 1 305 -7 452 205 39 71 chr13 39557760 39557887 -80187011 + L1ME LINE L1 5547 5669 -452 207 100 0 0 chr13 39557887 39557917 -80186981 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1695 162 47 14 chr13 39557922 39558218 -80186680 + AluJb SINE Alu 1 306 -6 697 275 74 89 chr13 39558240 39558434 -80186464 + L2 LINE L2 2915 3110 -203 1659 143 0 8 chr13 39558434 39558678 -80186220 - AluJo SINE Alu -50 262 21 697 275 74 89 chr13 39558678 39558745 -80186153 + L2 LINE L2 3110 3176 -137 531 0 0 0 chr13 39558745 39558804 -80186094 + (TG)n Simple_repeat Simple_repeat 2 60 0 697 275 74 89 chr13 39558804 39558945 -80185953 + L2 LINE L2 3176 3312 -1 1079 288 76 3 chr13 39559571 39559915 -80184983 + MLT1G1 LTR MaLR 5 373 -222 373 237 40 0 chr13 39560043 39560119 -80184779 + MER2 DNA MER2_type 267 345 0 584 252 15 0 chr13 39560125 39560260 -80184638 + MER119 DNA MER1_type 170 306 -277 * 1157 202 185 34 chr13 39560250 39560607 -80184291 + MLT1G3 LTR MaLR 110 520 -10 2133 118 0 7 chr13 39561974 39562278 -80182620 - AluSx SINE Alu -10 302 1 1665 93 5 0 chr13 39562846 39563060 -80181838 - AluSp SINE Alu -18 295 81 233 331 237 0 chr13 39563102 39563241 -80181657 - MIR SINE MIR -12 250 79 321 322 0 0 chr13 39564020 39564110 -80180788 - L2 LINE L2 -32 3281 3192 1534 114 199 4 chr13 39564224 39564470 -80180428 - AluJb SINE Alu -8 294 1 554 206 56 32 chr13 39564490 39564616 -80180282 - MER5A DNA MER1_type -44 145 17 2059 116 4 0 chr13 39564880 39565157 -80179741 + AluSg SINE Alu 1 278 -32 432 0 0 0 chr13 39565158 39565206 -80179692 + (TA)n Simple_repeat Simple_repeat 2 49 0 206 286 43 0 chr13 39566581 39566651 -80178247 + MIR SINE MIR 46 118 -90 2185 82 0 58 chr13 39567281 39567426 -80177472 + AluSx SINE Alu 1 153 -159 237 33 0 0 chr13 39567426 39567456 -80177442 + (CA)n Simple_repeat Simple_repeat 2 31 0 2185 82 0 58 chr13 39567456 39567638 -80177260 + AluSx SINE Alu 153 309 -3 2112 114 3 0 chr13 39567650 39567939 -80176959 + AluSx SINE Alu 5 294 -18 1354 145 200 14 chr13 39568336 39568728 -80176170 - LTR54B LTR ERV1 0 510 8 2007 143 3 0 chr13 39568783 39569076 -80175822 - AluSx SINE Alu -18 294 1 281 268 37 12 chr13 39569078 39569160 -80175738 - L1ME3A LINE L1 -53 6117 6034 1084 157 24 43 chr13 39569674 39569884 -80175014 + AluJb SINE Alu 107 312 0 595 231 164 29 chr13 39570273 39570511 -80174387 - MLT1H1 LTR MaLR 0 555 286 1562 178 4 15 chr13 39571868 39572137 -80172761 + AluJb SINE Alu 32 297 -15 189 319 125 48 chr13 39573331 39573579 -80171319 + L2 LINE L2 2898 3164 -149 * 312 289 70 18 chr13 39573569 39573683 -80171215 - L2 LINE L2 -1 3271 3152 612 225 0 26 chr13 39573697 39573848 -80171050 + L2 LINE L2 3166 3312 -1 489 158 0 12 chr13 39573875 39573957 -80170941 + FLAM_A SINE Alu 44 124 -18 581 257 93 51 chr13 39574104 39574215 -80170683 - MIR SINE MIR 0 262 157 2236 104 0 16 chr13 39574215 39574522 -80170376 - AluSx SINE Alu -10 302 1 581 257 93 51 chr13 39574522 39574647 -80170251 - MIR SINE MIR -105 157 16 1757 146 0 76 chr13 39575186 39575502 -80169396 + AluJo SINE Alu 1 292 -20 21 0 0 0 chr13 39575502 39575523 -80169375 + AT_rich Low_complexity Low_complexity 1 21 0 236 30 30 0 chr13 39575986 39576019 -80168879 + (GA)n Simple_repeat Simple_repeat 1 34 0 1764 155 26 4 chr13 39576191 39576462 -80168436 + AluJo SINE Alu 3 279 -33 300 222 120 26 chr13 39576568 39576685 -80168213 + L2 LINE L2 2841 2968 -304 754 295 83 58 chr13 39576697 39577236 -80167662 + LTR67 LTR ERVL 2 554 -3 192 342 86 70 chr13 39577392 39577579 -80167319 + L2 LINE L2 3071 3260 -12 776 232 97 56 chr13 39577814 39577915 -80166983 + MLT1L LTR MaLR 41 136 -479 1376 228 66 9 chr13 39577915 39578235 -80166663 + MER58B DNA MER1_type 1 338 -3 776 232 97 56 chr13 39578235 39578473 -80166425 + MLT1L LTR MaLR 136 394 -221 299 207 17 17 chr13 39578504 39578562 -80166336 + MLT1L LTR MaLR 467 524 -91 1844 149 14 3 chr13 39578586 39578881 -80166017 + AluJo SINE Alu 1 298 -14 21 36 0 0 chr13 39579088 39579116 -80165782 + AT_rich Low_complexity Low_complexity 1 28 0 232 258 32 0 chr13 39579145 39579207 -80165691 + CT-rich Low_complexity Low_complexity 6 69 0 23 0 0 0 chr13 39579341 39579364 -80165534 + AT_rich Low_complexity Low_complexity 1 23 0 1959 142 38 0 chr13 39579370 39579686 -80165212 + L1MA5 LINE L1 5973 6300 0 2038 94 0 18 chr13 39579816 39580092 -80164806 - AluSx SINE Alu -2 310 40 2305 102 0 0 chr13 39580561 39580856 -80164042 - AluSx SINE Alu -17 295 1 1168 105 6 6 chr13 39581131 39581293 -80163605 - AluSg/x SINE Alu -22 287 126 1394 77 0 11 chr13 39581394 39581576 -80163322 + AluSg/x SINE Alu 120 299 -11 210 290 204 21 chr13 39582099 39582192 -80162706 - MIR3 SINE MIR -84 124 15 1387 134 103 65 chr13 39582204 39582389 -80162509 - AluJo SINE Alu -10 302 101 4206 128 14 76 chr13 39582389 39583126 -80161772 + LTR8 LTR ERV1 1 691 0 1387 134 103 65 chr13 39583126 39583231 -80161667 - AluJo SINE Alu -211 101 1 2333 104 3 3 chr13 39583605 39583914 -80160984 + AluSx SINE Alu 3 311 -1 282 29 0 0 chr13 39583979 39584014 -80160884 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr13 39584013 39584035 -80160863 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 827 196 28 0 chr13 39584041 39584169 -80160729 - AluJo SINE Alu -44 268 134 2180 112 6 13 chr13 39584169 39584482 -80160416 - AluSx SINE Alu -1 311 1 827 196 28 0 chr13 39584482 39584496 -80160402 - AluJo SINE Alu -178 134 122 398 271 90 115 chr13 39584780 39585457 -80159441 - L1M2 LINE L1 -5721 1128 507 2401 62 7 3 chr13 39586006 39586311 -80158587 - AluSp SINE Alu -7 306 1 236 240 79 41 chr13 39586594 39586707 -80158191 + MIR SINE MIR 24 144 -64 334 0 21 21 chr13 39586726 39586773 -80158125 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2123 116 0 3 chr13 39586789 39587081 -80157817 - AluSg SINE Alu -19 291 1 288 323 0 21 chr13 39587594 39587687 -80157211 + MER5A DNA MER1_type 68 158 -31 445 271 129 13 chr13 39587722 39587877 -80157021 + MER5A DNA MER1_type 8 180 -9 21 0 0 0 chr13 39588015 39588036 -80156862 + AT_rich Low_complexity Low_complexity 1 21 0 1963 197 21 0 chr13 39588709 39589049 -80155849 + MER7A DNA MER2_type 1 345 -1 2423 81 3 0 chr13 39589483 39589781 -80155117 + AluSp SINE Alu 1 299 -14 393 314 39 39 chr13 39591200 39591404 -80153494 - MIR3 SINE MIR 0 208 5 2050 133 17 0 chr13 39593427 39593720 -80151178 + AluSx SINE Alu 1 298 -14 305 280 197 0 chr13 39594041 39594173 -80150725 - MIR SINE MIR -25 237 80 805 169 7 7 chr13 39594793 39594929 -80149969 + AluJo SINE Alu 1 136 -176 2021 139 16 7 chr13 39596375 39596684 -80148214 + AluJb SINE Alu 1 312 0 197 279 78 62 chr13 39596812 39596941 -80147957 - MIR SINE MIR -54 208 78 212 154 39 58 chr13 39597175 39597227 -80147671 + L2 LINE L2 3220 3270 -2 2369 68 7 3 chr13 39598003 39598296 -80146602 - AluSc SINE Alu -15 294 1 299 233 226 15 chr13 39598384 39598517 -80146381 + MER20B DNA MER1_type 29 189 -594 1762 116 105 0 chr13 39598646 39598913 -80145985 - AluSx SINE Alu -17 295 1 1436 200 75 8 chr13 39599433 39599739 -80145159 - MLT1A2 LTR MaLR 0 593 55 429 303 69 6 chr13 39599775 39599950 -80144948 + MIR SINE MIR 20 205 -57 2410 69 0 29 chr13 39599968 39600274 -80144624 - AluY SINE Alu -14 297 1 898 207 12 6 chr13 39600283 39600447 -80144451 - FAM SINE Alu -10 165 1 447 217 40 63 chr13 39601590 39601762 -80143136 - L1ME3A LINE L1 -1 6163 5996 2493 63 7 7 chr13 39604076 39604379 -80140519 + AluY SINE Alu 1 303 -8 2306 93 0 13 chr13 39605587 39605887 -80139011 - AluSx SINE Alu -16 296 1 2456 83 0 0 chr13 39606633 39606934 -80137964 + AluSg SINE Alu 1 301 -9 873 294 16 13 chr13 39608223 39608536 -80136362 + L1PA16 LINE L1 2 315 -7266 240 682 0 0 chr13 39608539 39608696 -80136202 + C-rich Low_complexity Low_complexity 1 157 0 14784 224 39 26 chr13 39608710 39612416 -80132482 + L1PA16 LINE L1 320 4929 -2675 2158 108 10 3 chr13 39612416 39612712 -80132186 + AluSg SINE Alu 1 298 -12 14784 224 39 26 chr13 39612712 39615411 -80129487 + L1PA16 LINE L1 4929 7591 -13 1912 155 10 13 chr13 39616572 39616881 -80128017 + AluJb SINE Alu 1 308 -4 254 222 16 0 chr13 39617645 39617708 -80127190 + (TA)n Simple_repeat Simple_repeat 2 65 0 2242 96 17 0 chr13 39618110 39618403 -80126495 - AluSc SINE Alu -11 298 1 2592 48 0 16 chr13 39618408 39618717 -80126181 - AluY SINE Alu -7 304 1 916 50 117 0 chr13 39618853 39618973 -80125925 + MER85 DNA T2_type 4 137 -2 3003 196 44 7 chr13 39620681 39621277 -80123621 - MER54A LTR ERVL 0 901 284 893 132 0 0 chr13 39621277 39621398 -80123500 + FRAM SINE Alu 28 148 -28 2039 101 11 0 chr13 39621398 39621676 -80123222 - AluSp SINE Alu -16 297 17 23 0 0 0 chr13 39621676 39621699 -80123199 + AT_rich Low_complexity Low_complexity 1 23 0 21 119 0 0 chr13 39621780 39621906 -80122992 + AT_rich Low_complexity Low_complexity 1 126 0 225 94 0 0 chr13 39622319 39622351 -80122547 + (TG)n Simple_repeat Simple_repeat 1 32 0 2275 114 0 0 chr13 39622501 39622809 -80122089 - AluSc SINE Alu -1 308 1 23 78 0 0 chr13 39622836 39622887 -80122011 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr13 39622995 39623023 -80121875 + AT_rich Low_complexity Low_complexity 1 28 0 2394 103 3 0 chr13 39623581 39623893 -80121005 + AluSp SINE Alu 1 313 0 670 193 0 6 chr13 39623916 39624157 -80120741 + AluJ SINE Alu 2 295 -17 43819 32 23 1 chr13 39624164 39630212 -80114686 + L1PA2 LINE L1 3 6155 0 287 241 143 9 chr13 39630503 39630615 -80114283 - MIR SINE MIR -55 207 81 220 362 103 9 chr13 39630704 39630936 -80113962 - L2 LINE L2 -668 2646 2393 483 348 17 6 chr13 39631401 39631579 -80113319 + MER5A DNA MER1_type 7 186 -3 2236 132 0 7 chr13 39632323 39632633 -80112265 + AluSx SINE Alu 1 308 -4 261 357 94 22 chr13 39632724 39632948 -80111950 - L3b LINE CR1 -219 1364 1125 26740 57 5 0 chr13 39633076 39637212 -80107686 + L1PA6 LINE L1 1997 6149 -5 9709 200 21 44 chr13 39637206 39637786 -80107112 + L1 LINE L1 2920 3512 -2634 * 2246 106 3 3 chr13 39637786 39638088 -80106810 + AluSg SINE Alu 1 302 -8 9709 200 21 44 chr13 39638088 39638604 -80106294 + L1 LINE L1 3512 4038 -2108 2167 120 7 0 chr13 39638604 39638903 -80105995 + AluSx SINE Alu 1 301 -11 9709 200 21 44 chr13 39638903 39640335 -80104563 + L1 LINE L1 4038 5392 -754 1375 124 27 0 chr13 39640330 39640555 -80104343 + L1PA16 LINE L1 5602 5832 -334 * 327 136 0 34 chr13 39640565 39640624 -80104274 + L1P4 LINE L1 5778 5834 -332 2107 158 5 23 chr13 39640632 39640690 -80104208 + L1PA16 LINE L1 5778 5836 -330 2416 89 0 0 chr13 39640690 39640992 -80103906 + AluSq SINE Alu 3 304 -9 2107 158 5 23 chr13 39640992 39641319 -80103579 + L1PA16 LINE L1 5836 6156 -10 737 278 36 26 chr13 39641409 39641718 -80103180 + L1ME LINE L1 3837 4148 -1998 2693 258 87 105 chr13 39641936 39643291 -80101607 + L1ME LINE L1 2577 3955 -2207 2005 138 16 0 chr13 39643291 39643596 -80101302 - AluSx SINE Alu -2 310 1 2693 258 87 105 chr13 39643596 39643628 -80101270 + L1ME LINE L1 3955 3986 -2176 324 0 0 0 chr13 39643628 39643664 -80101234 + (CA)n Simple_repeat Simple_repeat 2 37 0 2693 258 87 105 chr13 39643664 39644007 -80100891 + L1ME LINE L1 3986 4334 -1828 905 137 0 0 chr13 39644007 39644131 -80100767 + AluJb SINE Alu 168 291 -21 2693 258 87 105 chr13 39644131 39645460 -80099438 + L1ME LINE L1 4334 5705 -457 2246 121 0 0 chr13 39645460 39645758 -80099140 + AluSx SINE Alu 1 298 -14 2693 258 87 105 chr13 39645758 39645802 -80099096 + L1ME LINE L1 5705 5748 -414 393 244 138 8 chr13 39645842 39646088 -80098810 + L1ME LINE L1 4415 4692 -1454 555 292 113 52 chr13 39646134 39646460 -80098438 + L1ME LINE L1 4813 5176 -970 1871 165 0 7 chr13 39646460 39646757 -80098141 + AluJo SINE Alu 3 297 -15 555 292 113 52 chr13 39646757 39646889 -80098009 + L1ME LINE L1 5176 5299 -847 350 169 26 13 chr13 39647206 39647283 -80097615 - MER116 DNA Mariner 0 80 3 5754 133 55 15 chr13 39647807 39648997 -80095901 + L1MA8 LINE L1 4770 6029 -262 2247 108 10 3 chr13 39648997 39649302 -80095596 - AluSq SINE Alu -6 307 1 5754 133 55 15 chr13 39649302 39649576 -80095322 + L1MA8 LINE L1 6029 6291 0 315 276 31 0 chr13 39649706 39649804 -80095094 + CT-rich Low_complexity Low_complexity 2 102 0 24 32 0 0 chr13 39650038 39650069 -80094829 + AT_rich Low_complexity Low_complexity 1 31 0 216 228 0 0 chr13 39651707 39651764 -80093134 + (TA)n Simple_repeat Simple_repeat 1 57 0 430 291 189 31 chr13 39652425 39652807 -80092091 + L1ME LINE L1 5320 5761 -360 480 176 0 0 chr13 39652862 39652964 -80091934 + (TA)n Simple_repeat Simple_repeat 1 102 0 2536 59 0 3 chr13 39652964 39653270 -80091628 - AluY SINE Alu -6 305 1 2346 104 0 3 chr13 39653281 39653589 -80091309 - AluSq SINE Alu -6 307 1 188 149 21 0 chr13 39653773 39653820 -80091078 + (TA)n Simple_repeat Simple_repeat 1 48 0 883 186 127 51 chr13 39655100 39655337 -80089561 + AluJo SINE Alu 49 303 -9 279 231 39 13 chr13 39655822 39655900 -80088998 + MLT1H LTR MaLR 4 83 -466 2902 249 108 21 chr13 39656121 39656699 -80088199 + L1M4 LINE L1 3670 4196 -1950 1405 160 103 39 chr13 39656699 39656980 -80087918 + AluJo SINE Alu 1 299 -13 2902 249 108 21 chr13 39656980 39657260 -80087638 + L1M4 LINE L1 4196 4450 -1696 324 94 0 0 chr13 39657260 39657313 -80087585 + (TG)n Simple_repeat Simple_repeat 2 54 0 2902 249 108 21 chr13 39657313 39657692 -80087206 + L1M4 LINE L1 4450 5016 -1130 335 208 42 10 chr13 39657694 39657790 -80087108 + L1ME3 LINE L1 6062 6160 -2 234 255 0 0 chr13 39657797 39657848 -80087050 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2811 83 20 0 chr13 39657864 39658259 -80086639 - L1PA11 LINE L1 -3 6171 5769 526 94 249 0 chr13 39659247 39659360 -80085538 - L1M2 LINE L1 -376 5787 5661 347 132 0 0 chr13 39659372 39659425 -80085473 - AluSg SINE Alu -215 85 33 204 40 0 0 chr13 39659644 39659669 -80085229 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 42654 36 22 1 chr13 39659857 39665884 -80079014 - L1PA3 LINE L1 0 6155 1 21 57 0 0 chr13 39667238 39667273 -80077625 + AT_rich Low_complexity Low_complexity 1 35 0 1235 195 10 70 chr13 39667384 39667686 -80077212 + AluJo SINE Alu 13 296 -16 241 293 0 13 chr13 39667687 39667762 -80077136 + L1PA12 LINE L1 1 74 -7507 1091 137 36 0 chr13 39717779 39717947 -80026951 - AluSg/x SINE Alu -10 300 127 930 188 6 29 chr13 39718515 39718685 -80026213 + FRAM SINE Alu 1 166 0 21 71 0 0 chr13 39719448 39719490 -80025408 + AT_rich Low_complexity Low_complexity 1 42 0 263 227 45 15 chr13 39719549 39719615 -80025283 - L2 LINE L2 -6 3307 3240 300 263 132 26 chr13 39719883 39720035 -80024863 - MIR SINE MIR 0 262 95 324 309 24 42 chr13 39720138 39720306 -80024592 + MIR SINE MIR 68 232 -30 545 227 106 7 chr13 39720360 39720501 -80024397 + MIR SINE MIR 90 244 -18 2459 67 7 0 chr13 39720836 39721133 -80023765 + AluY SINE Alu 1 299 -12 180 0 0 0 chr13 39721193 39721213 -80023685 + (CATTC)n Simple_repeat Simple_repeat 5 24 0 2090 125 0 3 chr13 39721481 39721770 -80023128 + AluSg SINE Alu 2 289 -21 24 85 0 0 chr13 39721849 39721908 -80022990 + AT_rich Low_complexity Low_complexity 1 59 0 279 0 0 0 chr13 39722197 39722228 -80022670 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 5802 58 21 53 chr13 39722228 39723072 -80021826 + SVA Other Other 50 866 -520 1084 91 63 14 chr13 39723100 39723321 -80021577 + SVA Other Other 635 866 -520 2100 122 0 16 chr13 39723534 39723837 -80021061 - AluSx SINE Alu -14 298 1 558 318 76 14 chr13 39724066 39724289 -80020609 + L2 LINE L2 2805 3041 -272 2486 68 7 0 chr13 39725772 39726080 -80018818 + AluSg SINE Alu 1 310 0 279 0 0 0 chr13 39726082 39726113 -80018785 + (TA)n Simple_repeat Simple_repeat 2 32 0 1416 243 106 63 chr13 39726608 39727365 -80017533 - L1M4 LINE L1 -1353 4793 3883 35 41 0 0 chr13 39727365 39727414 -80017484 + AT_rich Low_complexity Low_complexity 1 49 0 1884 178 152 8 chr13 39727477 39727871 -80017027 - LTR32 LTR ERVL -7 464 14 1902 141 14 0 chr13 39727999 39728290 -80016608 + AluSx SINE Alu 1 295 -17 1774 235 148 28 chr13 39728300 39728462 -80016436 + L1ME3 LINE L1 5419 5560 -602 2803 146 26 2 chr13 39728462 39728879 -80016019 - MSTA LTR MaLR -1 427 1 1774 235 148 28 chr13 39728879 39729349 -80015549 + L1ME3 LINE L1 5560 6127 -35 1523 154 61 39 chr13 39729351 39729657 -80015241 + AluJo SINE Alu 3 314 0 653 164 52 177 chr13 39730318 39730468 -80014430 + L1M4 LINE L1 4339 4506 -1640 1986 107 4 0 chr13 39730468 39730740 -80014158 + AluSp SINE Alu 41 313 0 653 164 52 177 chr13 39730740 39730782 -80014116 + L1M4 LINE L1 4506 4552 -1594 2402 43 3 10 chr13 39730782 39731083 -80013815 + AluY SINE Alu 1 299 -12 653 164 52 177 chr13 39731083 39731199 -80013699 + L1M4 LINE L1 4552 4609 -1537 625 149 16 58 chr13 39731205 39731326 -80013572 + FLAM_A SINE Alu 22 137 -5 236 160 0 40 chr13 39731326 39731376 -80013522 + L1M4 LINE L1 4604 4651 -1495 2346 96 0 0 chr13 39731382 39731684 -80013214 + AluSx SINE Alu 1 302 -10 273 330 9 19 chr13 39731701 39731767 -80013131 - MER5A DNA MER1_type -75 114 48 1444 169 37 30 chr13 39731767 39732063 -80012835 + AluJb SINE Alu 1 298 -14 273 330 9 19 chr13 39732063 39732102 -80012796 - MER5A DNA MER1_type -141 48 10 1229 174 9 0 chr13 39732204 39732417 -80012481 - AluJb SINE Alu -12 300 86 234 278 41 52 chr13 39732462 39732559 -80012339 + MER21B LTR ERV1 1 96 -767 2624 226 59 35 chr13 39732598 39733289 -80011609 + MER21B LTR ERV1 98 805 -58 332 263 32 11 chr13 39733345 39733440 -80011458 + L2 LINE L2 3216 3312 -1 1927 155 0 3 chr13 39733628 39733924 -80010974 - AluJb SINE Alu -15 297 3 1215 202 122 55 chr13 39734162 39734312 -80010586 + MSTC LTR MaLR 1 139 -289 2204 103 3 0 chr13 39734312 39734621 -80010277 + AluSp SINE Alu 1 310 0 1215 202 122 55 chr13 39734621 39734870 -80010028 + MSTC LTR MaLR 139 428 0 262 259 71 0 chr13 39734936 39735021 -80009877 + L1ME LINE L1 5767 5857 -264 2174 113 0 7 chr13 39735168 39735468 -80009430 + AluSx SINE Alu 5 302 -10 22 35 0 0 chr13 39735708 39735737 -80009161 + AT_rich Low_complexity Low_complexity 1 29 0 385 208 131 69 chr13 39736373 39736503 -80008395 - MIR3 SINE MIR -6 202 65 2233 106 10 0 chr13 39738093 39738396 -80006502 - AluSp SINE Alu -7 306 1 1795 90 4 8 chr13 39739352 39739586 -80005312 - AluSg/x SINE Alu -14 298 66 344 261 127 28 chr13 39739767 39739909 -80004989 - MIR SINE MIR -105 157 2 253 288 17 0 chr13 39740088 39740147 -80004751 - MER91B DNA MER1_type 0 196 137 2252 97 3 28 chr13 39740148 39740467 -80004431 + AluY SINE Alu 1 311 0 1057 100 6 47 chr13 39740469 39740639 -80004259 + AluSg/x SINE Alu 129 291 -21 244 293 120 0 chr13 39740639 39740714 -80004184 - MER91B DNA MER1_type -50 140 57 280 267 108 25 chr13 39741024 39741144 -80003754 - MIR SINE MIR -71 191 62 2229 90 0 3 chr13 39741156 39741445 -80003453 - AluSg SINE Alu -22 288 1 2102 135 0 7 chr13 39741490 39741793 -80003105 - AluSx SINE Alu -11 301 1 467 291 106 5 chr13 39742154 39742343 -80002555 + MIR SINE MIR 2 209 -53 27 29 0 0 chr13 39742381 39742415 -80002483 + AT_rich Low_complexity Low_complexity 1 34 0 353 298 78 0 chr13 39742506 39742647 -80002251 + L1MC4 LINE L1 7890 8041 -1 1328 197 80 24 chr13 39742727 39743016 -80001882 + AluJo SINE Alu 1 305 -7 1183 148 51 5 chr13 39743318 39743535 -80001363 + MER46A DNA MER2_type 6 232 -4 291 28 0 0 chr13 39744063 39744099 -80000799 + (A)n Simple_repeat Simple_repeat 1 36 0 1801 179 0 3 chr13 39745344 39745635 -79999263 - AluJo SINE Alu -22 290 1 1968 140 3 7 chr13 39746206 39746498 -79998400 - AluJb SINE Alu -21 291 1 205 297 0 31 chr13 39747855 39747919 -79996979 - L3 LINE CR1 -1199 378 317 301 284 49 39 chr13 39749003 39749105 -79995793 - L1MEd LINE L1 -4741 1390 1288 464 201 169 44 chr13 39749294 39749525 -79995373 - L1MEd LINE L1 -4917 1202 931 1905 134 31 14 chr13 39749525 39749815 -79995083 - AluSx SINE Alu -17 295 1 464 201 169 44 chr13 39749815 39749856 -79995042 - L1MEd LINE L1 -5188 931 896 652 192 53 0 chr13 39749902 39750053 -79994845 - L1MA10 LINE L1 -1 6333 6175 285 171 27 95 chr13 39750053 39750166 -79994732 - L1ME2 LINE L1 -151 6015 5917 339 147 0 44 chr13 39750174 39750242 -79994656 + Tigger2 DNA MER2_type 5 69 -2649 * 925 130 0 12 chr13 39750232 39750394 -79994504 + Tigger2 DNA MER2_type 2273 2432 -286 911 180 12 30 chr13 39750394 39750561 -79994337 + AluJo SINE Alu 1 164 -148 284 238 48 0 chr13 39750563 39750626 -79994272 + Tigger2 DNA MER2_type 2653 2718 0 315 202 18 37 chr13 39750644 39750753 -79994145 - L1ME2 LINE L1 -279 5887 5781 443 83 0 0 chr13 39750756 39750816 -79994082 + Alu SINE Alu 236 295 -15 385 184 11 0 chr13 39750818 39750905 -79993993 + L1M4 LINE L1 5688 5775 -409 1613 141 12 0 chr13 39750938 39751180 -79993718 + AluSx SINE Alu 1 245 -67 708 319 59 12 chr13 39751208 39751616 -79993282 + L1MEd LINE L1 474 900 -5219 798 239 0 10 chr13 39751628 39751825 -79993073 + L1MEc LINE L1 37 231 -6165 492 187 16 32 chr13 39751833 39751956 -79992942 + L1ME LINE L1 5564 5684 -482 * 524 277 86 26 chr13 39751937 39752204 -79992694 - L1MEd LINE L1 -5669 450 168 25 31 0 0 chr13 39752635 39752667 -79992231 + AT_rich Low_complexity Low_complexity 1 32 0 2130 131 0 0 chr13 39752672 39752962 -79991936 - AluSq SINE Alu -23 290 1 1808 170 13 3 chr13 39753025 39753331 -79991567 - AluJo SINE Alu -3 309 1 337 333 80 84 chr13 39754068 39754519 -79990379 + L2 LINE L2 2809 3257 -15 25 31 0 0 chr13 39755206 39755238 -79989660 + AT_rich Low_complexity Low_complexity 1 32 0 1931 148 21 3 chr13 39755271 39755561 -79989337 + AluSx SINE Alu 6 300 -12 778 236 48 75 chr13 39755562 39755960 -79988938 - L1MC5 LINE L1 -287 7674 7288 1645 154 0 101 chr13 39756032 39756369 -79988529 - AluJo SINE Alu -6 306 4 587 181 56 95 chr13 39756375 39756655 -79988243 - L1MC5 LINE L1 -34 7927 7658 2373 91 3 0 chr13 39756655 39756952 -79987946 - AluSp SINE Alu -15 298 1 587 181 56 95 chr13 39756952 39756975 -79987923 - L1MC5 LINE L1 -303 7658 7636 1854 167 86 3 chr13 39756975 39757335 -79987563 + MLT1B LTR MaLR 1 390 0 897 123 152 6 chr13 39757926 39758097 -79986801 + MSTA LTR MaLR 1 196 -232 6606 65 21 35 chr13 39758097 39760088 -79984810 + SVA Other Other 7 1386 0 4616 26 0 0 chr13 39760135 39760672 -79984226 - L1PA2 LINE L1 -5 6150 5614 4144 20 0 0 chr13 39760672 39761173 -79983725 + L1P LINE L1 4507 5007 -1139 440 167 10 0 chr13 39761530 39761626 -79983272 + (TA)n Simple_repeat Simple_repeat 2 98 0 404 174 0 31 chr13 39761996 39762034 -79982864 + MER53 DNA DNA 95 133 -56 2269 109 0 3 chr13 39762034 39762338 -79982560 + AluSx SINE Alu 1 303 -9 404 174 0 31 chr13 39762338 39762397 -79982501 + MER53 DNA DNA 133 189 0 2382 104 0 0 chr13 39762958 39763257 -79981641 + AluSq SINE Alu 1 299 -14 2022 160 0 3 chr13 39763589 39763902 -79980996 + AluSx SINE Alu 1 312 0 208 319 14 0 chr13 39763968 39764040 -79980858 - MIR3 SINE MIR -11 197 125 2234 112 0 7 chr13 39764152 39764448 -79980450 - AluSx SINE Alu -18 294 1 2075 154 0 3 chr13 39764662 39764960 -79979938 - AluSx SINE Alu -15 297 1 1083 150 0 0 chr13 39765002 39765155 -79979743 + FRAM SINE Alu 5 157 -19 2048 102 25 3 chr13 39765823 39766107 -79978791 - AluSc SINE Alu -19 290 1 23 0 0 0 chr13 39766229 39766252 -79978646 + AT_rich Low_complexity Low_complexity 1 23 0 442 223 117 0 chr13 39766435 39766529 -79978369 - L2 LINE L2 -10 3303 3199 21 0 0 0 chr13 39766600 39766621 -79978277 + AT_rich Low_complexity Low_complexity 1 21 0 31 76 0 0 chr13 39767105 39767171 -79977727 + AT_rich Low_complexity Low_complexity 1 66 0 2079 122 27 3 chr13 39767543 39767839 -79977059 + AluSg SINE Alu 5 307 -3 627 142 8 16 chr13 39767842 39767969 -79976929 + GA-rich Low_complexity Low_complexity 3 128 0 1796 158 0 47 chr13 39768001 39768318 -79976580 + AluJo SINE Alu 1 302 -10 1691 176 6 53 chr13 39768384 39768707 -79976191 + AluJb SINE Alu 1 308 -4 968 241 9 14 chr13 39769024 39769244 -79975654 - MER20 DNA MER1_type 0 219 1 2373 92 0 19 chr13 39770783 39771097 -79973801 + AluSg SINE Alu 1 308 -2 2176 113 3 0 chr13 39771365 39771656 -79973242 + AluSq SINE Alu 1 292 -21 829 138 0 23 chr13 39771725 39771855 -79973043 - FLAM_C SINE Alu -6 127 1 21 0 0 0 chr13 39771861 39771882 -79973016 + AT_rich Low_complexity Low_complexity 1 21 0 193 156 62 109 chr13 39772492 39772507 -79972391 + MIR SINE MIR 201 215 -47 2339 96 0 3 chr13 39772507 39772809 -79972089 + AluSx SINE Alu 1 301 -11 193 156 62 109 chr13 39772809 39772857 -79972041 + MIR SINE MIR 215 261 -1 713 287 206 37 chr13 39773456 39773864 -79971034 - L2 LINE L2 -398 2916 2440 206 220 0 60 chr13 39773865 39773915 -79970983 + MIR SINE MIR 210 256 -6 2237 121 0 3 chr13 39774116 39774430 -79970468 + AluSq SINE Alu 1 313 0 313 333 140 71 chr13 39774448 39775190 -79969708 + L2 LINE L2 2128 2920 -394 * 714 285 54 16 chr13 39775180 39775422 -79969476 - MIR SINE MIR -10 252 2 471 197 31 79 chr13 39775975 39776036 -79968862 - MER5A DNA MER1_type -68 121 68 2170 123 0 0 chr13 39776036 39776329 -79968569 + AluSx SINE Alu 1 293 -19 471 197 31 79 chr13 39776329 39776394 -79968504 - MER5A DNA MER1_type -121 68 1 230 251 12 152 chr13 39776400 39776502 -79968396 + MIR3 SINE MIR 25 95 -113 756 143 0 86 chr13 39776502 39776642 -79968256 - FLAM_C SINE Alu -5 128 1 230 251 12 152 chr13 39776642 39776710 -79968188 + MIR3 SINE MIR 95 171 -37 2236 98 0 7 chr13 39776712 39777009 -79967889 - AluSx SINE Alu -17 295 1 363 239 14 0 chr13 39777026 39777097 -79967801 - MER5A DNA MER1_type -114 75 4 1233 236 69 55 chr13 39777126 39777676 -79967222 + L1ME3 LINE L1 5604 6161 -1 2111 97 36 4 chr13 39777681 39777959 -79966939 + AluSx SINE Alu 1 287 -25 6418 60 35 38 chr13 39778169 39779222 -79965676 + SVA Other Other 433 1386 0 458 143 92 59 chr13 39779254 39779307 -79965591 + LTR49-int LTR ERV1 3141 3191 -3140 2158 138 3 6 chr13 39779307 39779619 -79965279 - AluSq SINE Alu -2 311 1 458 143 92 59 chr13 39779619 39779684 -79965214 + LTR49-int LTR ERV1 3191 3263 -3068 319 200 0 0 chr13 39779738 39779798 -79965100 + LTR49-int LTR ERV1 3275 3334 -2997 457 194 20 0 chr13 39779861 39779959 -79964939 + LTR49-int LTR ERV1 3348 3447 -2884 186 43 0 0 chr13 39780136 39780159 -79964739 + (A)n Simple_repeat Simple_repeat 1 23 0 1320 96 87 30 chr13 39780160 39780390 -79964508 + MSTA LTR MaLR 186 428 0 245 343 14 0 chr13 39780558 39780631 -79964267 - L2 LINE L2 -44 3228 3155 788 191 0 0 chr13 39781040 39781171 -79963727 + FLAM_A SINE Alu 1 131 -2 2270 97 0 7 chr13 39781842 39782142 -79962756 + AluSc SINE Alu 1 298 -11 423 273 42 35 chr13 39782404 39782547 -79962351 - MIR3 SINE MIR -1 207 64 2348 185 79 84 chr13 39782571 39783249 -79961649 - L1MC4 LINE L1 -5 8037 7362 734 167 0 0 chr13 39783249 39783363 -79961535 - FLAM_A SINE Alu -18 115 2 2348 185 79 84 chr13 39783363 39783477 -79961421 - L1MC4 LINE L1 -680 7362 7249 673 159 0 0 chr13 39783502 39783609 -79961289 - AluSg/x SINE Alu -16 293 187 994 206 0 0 chr13 39784033 39784208 -79960690 + FAM SINE Alu 1 175 0 26 30 0 0 chr13 39784884 39784917 -79959981 + AT_rich Low_complexity Low_complexity 1 33 0 1940 136 19 10 chr13 39785028 39785336 -79959562 + AluSx SINE Alu 1 311 -1 430 261 187 25 chr13 39785648 39785851 -79959047 - MIR SINE MIR -21 241 6 2315 90 3 3 chr13 39786255 39786554 -79958344 + AluSc SINE Alu 2 300 -9 1600 154 60 101 chr13 39786905 39787189 -79957709 - MLT1C LTR MaLR 0 467 210 1780 154 0 0 chr13 39787189 39787462 -79957436 - AluJb SINE Alu -39 273 1 1600 154 60 101 chr13 39787462 39787664 -79957234 - MLT1C LTR MaLR -257 210 1 2137 130 7 3 chr13 39787967 39788267 -79956631 + AluSx SINE Alu 1 301 -11 448 269 100 0 chr13 39788448 39788608 -79956290 + MER5B DNA MER1_type 3 178 0 508 286 65 39 chr13 39789908 39790140 -79954758 + MIR SINE MIR 30 260 -2 2055 119 7 7 chr13 39790220 39790515 -79954383 - AluJo SINE Alu -12 300 6 334 265 10 0 chr13 39790707 39790805 -79954093 + L1ME3A LINE L1 6072 6170 0 1999 167 0 0 chr13 39791346 39791645 -79953253 - AluJb SINE Alu -11 301 3 438 256 78 85 chr13 39791937 39792195 -79952703 + MIR SINE MIR 7 262 0 238 238 32 16 chr13 39792249 39792312 -79952586 - L1P LINE L1 -2471 3675 3612 1003 224 10 15 chr13 39792343 39792548 -79952350 - AluJo SINE Alu -25 287 84 295 250 83 0 chr13 39793650 39793722 -79951176 - MIR SINE MIR -173 89 12 1786 171 23 0 chr13 39793879 39794178 -79950720 - AluJo SINE Alu -6 306 1 258 268 163 26 chr13 39795232 39795385 -79949513 - MIR SINE MIR -12 250 77 2004 170 10 24 chr13 39796407 39796825 -79948073 + L1MB8 LINE L1 5761 6172 -6 666 280 147 5 chr13 39797006 39797224 -79947674 + MIR SINE MIR 12 260 -2 2199 101 7 16 chr13 39799164 39799471 -79945427 - AluSp SINE Alu -8 305 2 239 287 178 25 chr13 39800321 39800596 -79944302 + L1ME LINE L1 4600 4916 -1230 2195 114 0 3 chr13 39800725 39801032 -79943866 + AluSc SINE Alu 1 306 -3 25 75 0 0 chr13 39801121 39801174 -79943724 + AT_rich Low_complexity Low_complexity 1 53 0 266 269 177 7 chr13 39801353 39801494 -79943404 + L1M1 LINE L1 5399 5563 -737 1183 100 9 113 chr13 39801509 39801739 -79943159 - L1PA16 LINE L1 -12 6154 5949 1172 194 13 17 chr13 39801895 39802127 -79942771 - MIR SINE MIR -29 233 3 265 222 148 0 chr13 39802149 39802230 -79942668 + L1ME LINE L1 5689 5781 -340 633 258 45 0 chr13 39802807 39802939 -79941959 + MIR SINE MIR 36 173 -89 280 301 68 30 chr13 39803099 39803232 -79941666 - MER112 DNA MER1_type -121 139 2 28 29 0 0 chr13 39803635 39803670 -79941228 + AT_rich Low_complexity Low_complexity 1 35 0 431 299 0 0 chr13 39804083 39804180 -79940718 - MIR3 SINE MIR -27 181 85 213 241 63 38 chr13 39806712 39806791 -79938107 - L2 LINE L2 -5 3308 3228 1469 203 11 18 chr13 39806909 39807190 -79937708 + AluJo SINE Alu 1 279 -33 344 290 107 8 chr13 39808788 39808919 -79935979 + MIR SINE MIR 1 144 -118 266 236 163 24 chr13 39808924 39809047 -79935851 + MIR SINE MIR 117 256 -6 2489 40 7 3 chr13 39809565 39809863 -79935035 - AluY SINE Alu -12 299 1 2180 115 6 16 chr13 39809927 39810241 -79934657 + AluSx SINE Alu 1 311 -1 457 310 26 7 chr13 39810840 39810995 -79933903 - MIR3 SINE MIR -9 199 42 2054 138 10 0 chr13 39811429 39811725 -79933173 - AluSx SINE Alu -13 299 1 27 0 0 0 chr13 39812167 39812194 -79932704 + AT_rich Low_complexity Low_complexity 1 27 0 2200 98 17 0 chr13 39813201 39813497 -79931401 + AluSx SINE Alu 1 301 -11 2042 126 80 89 chr13 39813500 39813961 -79930937 + L1MC3 LINE L1 7206 7662 -123 238 155 138 0 chr13 39813970 39814028 -79930870 + L1MC3 LINE L1 7709 7774 -11 806 174 0 0 chr13 39814072 39814204 -79930694 - FLAM_C SINE Alu -1 132 1 311 293 152 30 chr13 39814751 39814915 -79929983 - MIR SINE MIR -71 191 8 1752 176 7 13 chr13 39816111 39816412 -79928486 - AluJo SINE Alu -13 299 1 1984 137 3 3 chr13 39816988 39817287 -79927611 + AluSx SINE Alu 1 299 -13 206 360 64 12 chr13 39817825 39817997 -79926901 + L2 LINE L2 2637 2817 -497 3876 155 78 5 chr13 39818104 39819163 -79925735 + L1MC1 LINE L1 4748 5879 -454 1417 123 24 44 chr13 39819163 39819413 -79925485 + L1MC1 LINE L1 6083 6328 -5 2308 95 0 0 chr13 39819889 39820183 -79924715 - AluSg SINE Alu -16 294 1 852 141 8 0 chr13 39820187 39820315 -79924583 - FLAM_C SINE Alu 0 133 5 1715 155 24 3 chr13 39820496 39820792 -79924106 + AluJb SINE Alu 1 302 -10 1918 150 67 3 chr13 39820859 39821186 -79923712 + MER7A DNA MER2_type 1 346 0 965 172 53 6 chr13 39821433 39821602 -79923296 + AluSx SINE Alu 42 218 -94 1638 138 106 0 chr13 39822866 39823148 -79921750 - AluSx SINE Alu 0 312 1 22 35 0 0 chr13 39823494 39823523 -79921375 + AT_rich Low_complexity Low_complexity 1 29 0 773 101 72 203 chr13 39823524 39823606 -79921292 + L1 LINE L1 4558 4649 -1497 2338 95 0 0 chr13 39823606 39823902 -79920996 - AluSg SINE Alu -14 296 1 773 101 72 203 chr13 39823902 39823933 -79920965 + L1 LINE L1 4649 4682 -1464 769 174 0 0 chr13 39823933 39824048 -79920850 + FLAM_C SINE Alu 1 115 -18 773 101 72 203 chr13 39824048 39824209 -79920689 + L1 LINE L1 4682 4797 -1349 441 239 0 0 chr13 39824209 39824297 -79920601 - L2 LINE L2 -37 3276 3189 548 275 88 0 chr13 39824352 39824512 -79920386 + FAM SINE Alu 1 174 -11 191 233 0 47 chr13 39824849 39824892 -79920006 - MER5B DNA MER1_type -99 79 39 1070 178 11 0 chr13 39824988 39825173 -79919725 + AluJo SINE Alu 1 187 -125 183 42 0 0 chr13 39825244 39825268 -79919630 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr13 39825534 39825564 -79919334 + AT_rich Low_complexity Low_complexity 1 30 0 199 371 136 14 chr13 39826676 39826816 -79918082 - L2 LINE L2 0 3272 3116 189 414 36 18 chr13 39827089 39827200 -79917698 + MIR SINE MIR 18 130 -132 180 0 0 0 chr13 39828078 39828098 -79916800 + (A)n Simple_repeat Simple_repeat 1 20 0 5170 198 92 35 chr13 39830418 39831586 -79913312 + Charlie1a DNA MER1_type 1 1260 -1501 683 195 8 23 chr13 39831586 39831714 -79913184 - FLAM_A SINE Alu -7 126 1 5170 198 92 35 chr13 39831714 39831916 -79912982 + Charlie1a DNA MER1_type 1260 1449 -6 266 305 97 7 chr13 39831966 39832120 -79912778 - L1ME LINE L1 -422 5699 5532 25 51 0 0 chr13 39832242 39832281 -79912617 + AT_rich Low_complexity Low_complexity 1 39 0 607 167 0 0 chr13 39832503 39832605 -79912293 - Charlie1 DNA MER1_type 0 2761 2660 759 178 0 22 chr13 39832751 39832886 -79912012 + AluJo SINE Alu 1 132 -170 751 201 30 37 chr13 39832915 39833079 -79911819 + AluJo SINE Alu 120 282 -30 186 43 0 0 chr13 39833116 39833139 -79911759 + (TG)n Simple_repeat Simple_repeat 1 23 0 217 234 208 0 chr13 39833279 39833356 -79911542 + L2 LINE L2 3221 3313 0 1881 163 0 0 chr13 39834080 39834368 -79910530 - AluJb SINE Alu -21 291 4 538 228 31 8 chr13 39834392 39834519 -79910379 - FLAM_A SINE Alu -3 130 1 2010 138 0 19 chr13 39834652 39834964 -79909934 + AluSx SINE Alu 1 306 -6 1755 161 3 50 chr13 39835158 39835481 -79909417 - AluJo SINE Alu 0 312 5 27 29 0 0 chr13 39835591 39835625 -79909273 + AT_rich Low_complexity Low_complexity 1 34 0 477 177 0 0 chr13 39835718 39835797 -79909101 - Charlie2 DNA MER1_type -2554 308 230 305 226 43 0 chr13 39835959 39836052 -79908846 + L1ME3 LINE L1 5727 5823 -339 329 260 56 51 chr13 39836064 39836260 -79908638 + L1ME3 LINE L1 5871 6067 -95 23 33 0 0 chr13 39836488 39836518 -79908380 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr13 39836557 39836592 -79908306 + AT_rich Low_complexity Low_complexity 1 35 0 296 241 69 35 chr13 39836776 39836892 -79908006 + HAL1 LINE L1 2379 2498 -9 206 312 37 46 chr13 39838166 39838275 -79906623 + MER5A DNA MER1_type 7 114 -75 2447 84 3 0 chr13 39839264 39839572 -79905326 + AluSp SINE Alu 5 313 0 306 0 0 0 chr13 39839575 39839609 -79905289 + (TA)n Simple_repeat Simple_repeat 2 35 0 504 241 115 9 chr13 39839946 39840095 -79904803 + MIR3 SINE MIR 39 208 0 24 53 0 0 chr13 39842200 39842238 -79902660 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 39843257 39843287 -79901611 + AT_rich Low_complexity Low_complexity 1 30 0 569 283 66 6 chr13 39844158 39844324 -79900574 + MIR SINE MIR 25 200 -62 3613 198 59 24 chr13 39844324 39845202 -79899696 + L1ME1 LINE L1 5254 6162 -4 2030 121 7 0 chr13 39845226 39845507 -79899391 + AluSx SINE Alu 1 283 -29 253 160 7 0 chr13 39845520 39845576 -79899322 + L1PA7 LINE L1 6091 6166 -6 218 330 85 28 chr13 39846380 39846486 -79898412 + L2 LINE L2 3159 3270 -2 27 29 0 0 chr13 39846753 39846787 -79898111 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr13 39846917 39846940 -79897958 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1341 143 6 163 chr13 39846955 39847304 -79897594 - AluJo SINE Alu -18 294 1 208 125 0 100 chr13 39848020 39848060 -79896838 - MIR3 SINE MIR -22 186 151 230 223 152 45 chr13 39848144 39848256 -79896642 - MIR3 SINE MIR -27 181 58 458 163 35 0 chr13 39848261 39848347 -79896551 - L2 LINE L2 -2 3311 3223 18811 146 57 20 chr13 39848365 39851361 -79893537 + ERVL-B3 LTR ERVL 2409 5533 -231 2195 104 0 36 chr13 39851361 39851670 -79893228 - AluSg SINE Alu -12 298 1 18811 146 57 20 chr13 39851670 39851902 -79892996 + ERVL-B3 LTR ERVL 5533 5755 -9 1376 127 73 70 chr13 39851904 39852020 -79892878 + MLT2B3 LTR ERVL 1 115 -439 1815 146 42 0 chr13 39852020 39852307 -79892591 - AluJb SINE Alu -11 301 3 1376 127 73 70 chr13 39852307 39852449 -79892449 + MLT2B3 LTR ERVL 115 260 -294 1468 275 79 55 chr13 39852449 39853088 -79891810 - L2 LINE L2 -879 2435 1778 1743 184 7 26 chr13 39853088 39853393 -79891505 + AluJb SINE Alu 1 299 -13 1468 275 79 55 chr13 39853393 39853423 -79891475 - L2 LINE L2 -1536 1778 1750 1634 194 16 7 chr13 39853506 39853815 -79891083 + AluJb SINE Alu 1 312 0 396 224 103 67 chr13 39853917 39854082 -79890816 + MIR3 SINE MIR 33 203 -5 2300 96 0 7 chr13 39854165 39854468 -79890430 + AluSg1 SINE Alu 1 301 -8 2434 91 0 0 chr13 39854835 39855144 -79889754 - AluSq SINE Alu -3 310 2 1720 175 36 7 chr13 39855205 39855508 -79889390 + AluJo SINE Alu 1 312 0 518 299 147 5 chr13 39855811 39856022 -79888876 + MIR SINE MIR 4 244 -18 612 205 117 2 chr13 39856025 39856179 -79888719 + L1MD2 LINE L1 5750 5918 -263 1656 149 20 0 chr13 39856189 39856438 -79888460 + MER1B DNA MER1_type 86 339 0 919 212 69 27 chr13 39856439 39856712 -79888186 + L1ME1 LINE L1 5901 6135 -31 1739 206 97 10 chr13 39856712 39857114 -79887784 + L1MD3 LINE L1 7559 7995 0 23 0 0 0 chr13 39857414 39857437 -79887461 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chr13 39857950 39857994 -79886904 + L2 LINE L2 3265 3308 -5 198 143 0 0 chr13 39858341 39858376 -79886522 + (A)n Simple_repeat Simple_repeat 1 35 0 234 0 0 0 chr13 39858472 39858498 -79886400 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2306 84 0 53 chr13 39858520 39858843 -79886055 - AluY SINE Alu -5 306 1 5817 33 0 0 chr13 39859099 39859735 -79885163 + L1PA5 LINE L1 5510 6145 -9 22 0 0 0 chr13 39859735 39859757 -79885141 + AT_rich Low_complexity Low_complexity 1 22 0 225 320 64 13 chr13 39860005 39860083 -79884815 - MIR SINE MIR -161 101 20 2465 87 0 3 chr13 39860142 39860453 -79884445 + AluSg SINE Alu 1 310 0 1601 140 9 89 chr13 39860835 39861150 -79883748 + AluJb SINE Alu 1 290 -22 2039 120 34 0 chr13 39861362 39861654 -79883244 + AluSx SINE Alu 1 302 -10 817 160 8 0 chr13 39861745 39861890 -79883008 + FLAM_C SINE Alu 1 146 0 189 0 0 0 chr13 39861964 39861985 -79882913 + (A)n Simple_repeat Simple_repeat 1 21 0 401 278 152 32 chr13 39862487 39863082 -79881816 + L1MC4a LINE L1 5299 5993 -128 2236 144 6 37 chr13 39863082 39863430 -79881468 - MER1B DNA MER1_type 0 337 1 401 278 152 32 chr13 39863430 39863488 -79881410 + L1MC4a LINE L1 5993 6043 -78 237 257 122 0 chr13 39863497 39863571 -79881327 - L2 LINE L2 -24 3289 3207 352 302 158 14 chr13 39863612 39863827 -79881071 - L2 LINE L2 -241 3072 2827 1621 187 20 7 chr13 39864024 39864318 -79880580 + AluJb SINE Alu 1 298 -14 316 275 147 0 chr13 39864359 39864468 -79880430 - MER5A DNA MER1_type -22 167 43 1584 153 43 0 chr13 39864664 39864919 -79879979 - AluSx SINE Alu -24 288 23 42550 59 7 1 chr13 39864936 39871042 -79873856 - L1PA5 LINE L1 0 6154 11 1505 201 21 0 chr13 39871056 39871340 -79873558 - AluJb SINE Alu -22 290 1 456 261 197 46 chr13 39871418 39871789 -79873109 + L2 LINE L2 1729 2155 -1159 403 339 104 32 chr13 39872067 39872538 -79872360 + L2 LINE L2 2726 3221 -51 3287 153 59 65 chr13 39872643 39873194 -79871704 - L1MB2 LINE L1 -1 6170 5622 2099 110 21 0 chr13 39873194 39873476 -79871422 - AluSg SINE Alu -22 288 1 3287 153 59 65 chr13 39873476 39873652 -79871246 - L1MB2 LINE L1 -549 5622 5447 2214 125 3 13 chr13 39874554 39874867 -79870031 - AluSx SINE Alu -2 310 1 823 231 0 0 chr13 39875197 39875357 -79869541 + FRAM SINE Alu 1 160 -6 21 0 0 0 chr13 39875678 39875699 -79869199 + AT_rich Low_complexity Low_complexity 1 21 0 2235 116 0 0 chr13 39875701 39875995 -79868903 + AluSx SINE Alu 3 296 -16 359 266 58 91 chr13 39877631 39877785 -79867113 - L2 LINE L2 -1 3271 3123 247 276 47 39 chr13 39877976 39878103 -79866795 + L2 LINE L2 2932 3059 -213 1335 138 5 37 chr13 39878317 39878534 -79866364 - AluJb SINE Alu -17 295 86 2950 189 80 14 chr13 39878621 39879247 -79865651 - L1MB8 LINE L1 -2 6176 5510 491 296 177 24 chr13 39879297 39879691 -79865207 - L2 LINE L2 -94 3219 2770 1112 150 22 75 chr13 39879779 39880005 -79864893 - AluJo SINE Alu -12 300 87 1313 132 118 87 chr13 39880012 39880299 -79864599 - AluSg SINE Alu -14 296 1 2247 102 0 3 chr13 39881318 39881621 -79863277 + AluSx SINE Alu 1 302 -10 654 41 0 0 chr13 39883364 39883437 -79861461 - tRNA-Glu-GAA tRNA tRNA -2 73 1 333 118 0 0 chr13 39883533 39883584 -79861314 + (CCG)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chr13 39884724 39884752 -79860146 + (T)n Simple_repeat Simple_repeat 1 28 0 1447 247 113 23 chr13 39886676 39887154 -79857744 - L1MC4a LINE L1 -1775 6033 5513 189 0 0 0 chr13 39887917 39887938 -79856960 + (A)n Simple_repeat Simple_repeat 1 21 0 467 288 105 9 chr13 39889318 39889547 -79855351 - L1ME LINE L1 -336 5785 5535 1365 144 144 4 chr13 39889620 39889877 -79855021 - AluJb SINE Alu -15 297 5 1573 150 7 37 chr13 39890026 39890299 -79854599 + AluJo SINE Alu 1 265 -47 796 158 0 15 chr13 39890672 39890805 -79854093 - L1PB4 LINE L1 0 6156 6026 277 265 100 80 chr13 39890870 39891119 -79853779 - L1ME LINE L1 -1310 4836 4583 181 30 91 0 chr13 39891256 39891289 -79853609 + A-rich Low_complexity Low_complexity 3 38 0 970 120 0 8 chr13 39891872 39892005 -79852893 + AluSq/x SINE Alu 1 132 -181 1969 95 4 0 chr13 39892008 39892260 -79852638 + AluY SINE Alu 1 253 -58 621 108 0 0 chr13 39892260 39892343 -79852555 + AluY SINE Alu 209 291 -20 1237 128 0 0 chr13 39892343 39892531 -79852367 + AluSp SINE Alu 121 308 -5 342 250 0 0 chr13 39892874 39892938 -79851960 + L2 LINE L2 3186 3249 -23 196 302 201 35 chr13 39893119 39893463 -79851435 - L2 LINE L2 -881 2433 2033 1976 137 0 16 chr13 39894388 39894695 -79850203 + AluSg SINE Alu 1 302 -8 2493 139 58 15 chr13 39894897 39895307 -79849591 - MSTA LTR MaLR 0 428 1 207 180 49 82 chr13 39895797 39895858 -79849040 - MIR3 SINE MIR -28 180 122 2114 104 13 10 chr13 39895859 39896157 -79848741 + AluSq SINE Alu 1 299 -14 2180 92 34 0 chr13 39896160 39896453 -79848445 + AluSx SINE Alu 1 303 -9 2403 61 7 3 chr13 39896563 39896856 -79848042 - AluY SINE Alu -15 296 3 426 313 149 9 chr13 39897119 39897333 -79847565 + MIR SINE MIR 6 249 -13 1693 130 0 0 chr13 39897346 39897584 -79847314 + AluSx SINE Alu 6 243 -69 31 0 0 0 chr13 39897584 39897615 -79847283 + AT_rich Low_complexity Low_complexity 1 31 0 379 272 39 0 chr13 39897703 39897806 -79847092 - MER94 DNA DNA 0 134 28 1610 197 3 10 chr13 39898009 39898303 -79846595 - AluJo SINE Alu -14 298 7 2218 113 0 13 chr13 39898898 39899209 -79845689 - AluSc SINE Alu -2 307 1 1629 158 27 30 chr13 39899637 39899973 -79844925 + L1PB4 LINE L1 3679 4013 -2133 989 170 0 0 chr13 39899974 39900133 -79844765 + AluSg/x SINE Alu 137 295 -17 5767 178 43 26 chr13 39900135 39901174 -79843724 + L1PB4 LINE L1 4003 5023 -1133 2371 106 3 0 chr13 39901174 39901486 -79843412 + AluSp SINE Alu 1 313 0 5767 178 43 26 chr13 39901486 39901917 -79842981 + L1PB4 LINE L1 5023 5445 -711 1868 102 117 11 chr13 39901917 39902191 -79842707 + AluSx SINE Alu 1 303 -9 5767 178 43 26 chr13 39902191 39902850 -79842048 + L1PB4 LINE L1 5445 6152 -4 2095 103 4 0 chr13 39903563 39903836 -79841062 + AluSc SINE Alu 18 291 -18 1823 171 7 3 chr13 39903845 39904149 -79840749 + AluJb SINE Alu 1 305 -7 913 182 0 0 chr13 39904295 39904454 -79840444 + FRAM SINE Alu 1 158 -18 1485 168 0 4 chr13 39904804 39905042 -79839856 - AluJb SINE Alu -75 237 1 247 336 65 19 chr13 39906152 39906259 -79838639 - L2 LINE L2 -11 3302 3191 24 0 0 0 chr13 39907255 39907279 -79837619 + AT_rich Low_complexity Low_complexity 1 24 0 1572 175 11 21 chr13 39907592 39907877 -79837021 + AluJb SINE Alu 11 292 -20 233 294 84 64 chr13 39907921 39908278 -79836620 - L1M4 LINE L1 -1347 4799 4436 2168 103 14 0 chr13 39908300 39908590 -79836308 + AluSg SINE Alu 1 294 -16 182 147 118 0 chr13 39908591 39908625 -79836273 + L2 LINE L2 3201 3238 -75 1734 224 44 48 chr13 39908625 39909143 -79835755 + MER74B LTR ERVL 72 587 -35 1054 281 47 0 chr13 39909169 39909510 -79835388 + L1MC4a LINE L1 5543 5899 -1909 498 270 95 21 chr13 39909519 39909708 -79835190 + MIR SINE MIR 9 211 -51 513 127 13 0 chr13 39910141 39910220 -79834678 + L1MB3 LINE L1 6059 6138 -45 900 155 0 0 chr13 39910220 39910349 -79834549 + FLAM_C SINE Alu 1 129 -4 298 98 61 0 chr13 39910349 39910431 -79834467 + (TA)n Simple_repeat Simple_repeat 2 88 0 41 66 0 0 chr13 39910433 39910509 -79834389 + AT_rich Low_complexity Low_complexity 1 76 0 210 231 0 0 chr13 39910509 39910574 -79834324 + (TA)n Simple_repeat Simple_repeat 1 65 0 1629 158 7 58 chr13 39910713 39911023 -79833875 - AluJo SINE Alu -18 294 1 1612 116 9 0 chr13 39911298 39911548 -79833350 - AluSg/x SINE Alu 0 312 67 3005 246 63 12 chr13 39911666 39912629 -79832269 - L1MCa LINE L1 -2592 3834 2823 648 144 245 43 chr13 39912621 39912691 -79832207 - L1MCa LINE L1 -4120 2306 2251 * 2560 47 3 0 chr13 39912691 39912991 -79831907 - AluY SINE Alu -10 301 1 2114 102 14 3 chr13 39912991 39913285 -79831613 - AluSq SINE Alu -16 297 1 648 144 245 43 chr13 39913285 39913500 -79831398 - L1MCa LINE L1 -4174 2252 1933 520 264 0 0 chr13 39913504 39913614 -79831284 + FLAM_A SINE Alu 1 110 -32 951 106 0 0 chr13 39913616 39913739 -79831159 + AluSg/x SINE Alu 163 285 -25 252 0 0 0 chr13 39913739 39913767 -79831131 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2455 74 15 21 chr13 39913769 39914106 -79830792 + L1PB2 LINE L1 5816 6150 -1 1116 137 24 19 chr13 39914116 39914186 -79830712 - L1MCa LINE L1 -4502 1924 1856 2437 86 3 0 chr13 39914186 39914489 -79830409 - AluSg SINE Alu -6 304 1 1116 137 24 19 chr13 39914489 39914586 -79830312 - L1MCa LINE L1 -4570 1856 1753 1535 162 92 4 chr13 39914586 39914857 -79830041 - AluJb SINE Alu -17 295 1 1116 137 24 19 chr13 39914857 39914893 -79830005 - L1MCa LINE L1 -4673 1753 1719 2656 73 0 12 chr13 39914893 39915235 -79829663 - MER4C LTR ERV1 0 465 128 704 89 40 0 chr13 39915235 39915336 -79829562 - AluSc SINE Alu -3 306 202 643 186 0 9 chr13 39915343 39915456 -79829442 - MER4D LTR ERV1 -238 665 554 2512 43 0 13 chr13 39915467 39915768 -79829130 + AluY SINE Alu 1 297 -14 2117 132 103 97 chr13 39916030 39916361 -79828537 + MSTA LTR MaLR 1 328 -100 2272 112 0 6 chr13 39916361 39916674 -79828224 - AluSq SINE Alu -2 311 1 2117 132 103 97 chr13 39916674 39916727 -79828171 + MSTA LTR MaLR 328 391 -37 2177 125 3 0 chr13 39916727 39917023 -79827875 - AluSq SINE Alu -16 297 1 2117 132 103 97 chr13 39917023 39917062 -79827836 + MSTA LTR MaLR 391 428 0 2143 214 105 62 chr13 39917427 39917962 -79826936 + MER50 LTR ERV1 1 512 -222 8379 128 16 24 chr13 39917962 39918082 -79826816 - L1PA11 LINE L1 0 6174 6055 2328 99 0 0 chr13 39918082 39918385 -79826513 - AluSc SINE Alu -6 303 1 8379 128 16 24 chr13 39918385 39919114 -79825784 - L1PA11 LINE L1 -119 6055 5322 2379 79 3 0 chr13 39919114 39919405 -79825493 - AluY SINE Alu -19 292 1 2405 103 3 0 chr13 39919415 39919726 -79825172 - AluSx SINE Alu 0 312 1 8379 128 16 24 chr13 39919726 39920992 -79823906 - L1PA11 LINE L1 -861 5313 4052 2143 214 105 62 chr13 39920992 39921160 -79823738 + MER50 LTR ERV1 512 734 0 1029 147 0 71 chr13 39921909 39921952 -79822946 - AluSx SINE Alu 0 310 266 180 0 0 0 chr13 39921952 39921972 -79822926 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1029 147 0 71 chr13 39921972 39922126 -79822772 - AluSx SINE Alu -44 266 127 310 221 130 0 chr13 39922134 39922211 -79822687 - L1MC4 LINE L1 -1339 6703 6617 2405 70 0 17 chr13 39922211 39922512 -79822386 - AluY SINE Alu -15 296 1 911 118 0 15 chr13 39922513 39922648 -79822250 - AluSx SINE Alu -180 133 1 2525 124 8 0 chr13 39922660 39923031 -79821867 - MER41D LTR ERV1 -183 374 1 1265 185 22 0 chr13 39923032 39923254 -79821644 + AluJo SINE Alu 56 282 -30 226 333 77 26 chr13 39923336 39923453 -79821445 - MIR SINE MIR -63 145 23 742 241 47 16 chr13 39923660 39923851 -79821047 - MIR SINE MIR -60 202 6 735 286 91 33 chr13 39924067 39924431 -79820467 + L1MC4a LINE L1 5464 5848 -1960 1633 161 21 0 chr13 39924509 39924788 -79820110 + MER49 LTR ERV1 1 285 -638 1200 189 6 8 chr13 39924838 39925098 -79819800 + LTR39 LTR ERV1 394 774 -129 498 158 0 0 chr13 39925102 39925178 -79819720 - AluS SINE Alu -229 84 9 342 288 25 34 chr13 39925188 39925306 -79819592 + MER4E LTR ERV1 641 757 -22 878 151 0 0 chr13 39925306 39925432 -79819466 + AluJo SINE Alu 1 126 -186 516 124 29 0 chr13 39925432 39925537 -79819361 + (TA)n Simple_repeat Simple_repeat 1 108 0 2142 120 3 0 chr13 39925555 39925847 -79819051 + AluSg SINE Alu 1 293 -17 452 261 21 63 chr13 39925859 39926001 -79818897 + AluJo SINE Alu 129 264 -48 1728 157 0 4 chr13 39926379 39926653 -79818245 - AluJb SINE Alu -37 275 3 239 204 68 80 chr13 39926800 39926888 -79818010 - MLT2B3 LTR ERVL 0 554 468 387 0 0 0 chr13 39926890 39926933 -79817965 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1972 183 147 5 chr13 39926963 39927400 -79817498 - MLT2B3 LTR ERVL -55 499 1 2156 110 24 0 chr13 39927419 39927709 -79817189 + AluSg SINE Alu 1 297 -13 2181 127 0 10 chr13 39927832 39928139 -79816759 + AluSx SINE Alu 1 304 -8 268 233 100 33 chr13 39928173 39928263 -79816635 - LTR67 LTR ERVL -276 281 186 257 292 0 42 chr13 39928420 39928516 -79816382 - L1MC/D LINE L1 -1936 5872 5781 2037 112 3 43 chr13 39928620 39928943 -79815955 + AluSg SINE Alu 1 310 0 2202 105 24 0 chr13 39929103 39929398 -79815500 + AluSp SINE Alu 1 302 -11 2325 78 7 10 chr13 39929400 39929709 -79815189 + AluY SINE Alu 1 308 -3 7228 128 96 17 chr13 39930169 39931224 -79813674 + MER52C LTR ERV1 1 1162 -116 2146 128 0 0 chr13 39931224 39931530 -79813368 + AluSg SINE Alu 1 306 -4 7228 128 96 17 chr13 39931530 39931658 -79813240 + MER52C LTR ERV1 1162 1278 0 213 262 0 0 chr13 39931805 39931847 -79813051 + L3 LINE CR1 1453 1494 -83 2360 92 0 13 chr13 39932024 39932329 -79812569 + AluSx SINE Alu 2 302 -10 878 205 0 0 chr13 39932373 39932524 -79812374 - Tigger3(Golem) DNA MER2_type -1 3028 2878 284 208 113 0 chr13 39932525 39932578 -79812320 - Tigger3(Golem) DNA MER2_type -2969 60 2 1602 152 97 61 chr13 39932673 39933035 -79811863 + THE1C LTR MaLR 1 375 0 1473 187 0 53 chr13 39933038 39933134 -79811764 + AluJo SINE Alu 1 101 -211 2549 58 0 0 chr13 39933134 39933428 -79811470 + AluSg SINE Alu 1 294 -16 1473 187 0 53 chr13 39933428 39933615 -79811283 + AluJo SINE Alu 101 269 -43 488 314 61 61 chr13 39933682 39933978 -79810920 - L2 LINE L2 -78 3194 2899 279 0 0 0 chr13 39934005 39934036 -79810862 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1365 161 8 56 chr13 39934114 39934219 -79810679 + AluJb SINE Alu 42 151 -161 2315 108 0 0 chr13 39934219 39934515 -79810383 + AluSx SINE Alu 1 296 -16 1365 161 8 56 chr13 39934515 39934676 -79810222 + AluJb SINE Alu 151 295 -17 476 288 22 27 chr13 39934678 39934862 -79810036 - L2 LINE L2 -450 2864 2682 416 240 19 0 chr13 39934891 39934995 -79809903 - Charlie4a DNA MER1_type -16 492 387 3343 175 62 40 chr13 39934995 39935083 -79809815 + L1MB8 LINE L1 4360 4445 -1701 1858 159 3 19 chr13 39935083 39935391 -79809507 + AluJo SINE Alu 1 303 -9 3343 175 62 40 chr13 39935391 39936004 -79808894 + L1MB8 LINE L1 4445 5084 -1062 1352 205 37 34 chr13 39936004 39936302 -79808596 + AluJo SINE Alu 1 299 -13 3343 175 62 40 chr13 39936302 39936422 -79808476 + L1MB8 LINE L1 5084 5200 -946 1637 132 92 86 chr13 39936429 39936672 -79808226 - MLT1B LTR MaLR 0 390 143 1634 117 133 0 chr13 39936672 39936936 -79807962 - AluSg SINE Alu -9 301 3 1637 132 92 86 chr13 39936936 39937040 -79807858 - MLT1B LTR MaLR -247 143 41 1790 149 73 89 chr13 39937044 39937445 -79807453 + L1MB8 LINE L1 5745 6140 -38 2556 59 0 3 chr13 39937445 39937749 -79807149 - AluY SINE Alu -8 303 1 1790 149 73 89 chr13 39937749 39937783 -79807115 + L1MB8 LINE L1 6140 6173 -5 297 111 0 0 chr13 39937783 39937837 -79807061 - Charlie4a DNA MER1_type -97 411 358 232 91 0 0 chr13 39937843 39937876 -79807022 - Alu SINE Alu -10 292 260 513 127 13 0 chr13 39938237 39938316 -79806582 + L1MB3 LINE L1 6059 6138 -45 900 155 0 0 chr13 39938316 39938445 -79806453 + FLAM_C SINE Alu 1 129 -4 298 98 61 0 chr13 39938445 39938527 -79806371 + (TA)n Simple_repeat Simple_repeat 2 88 0 41 66 0 0 chr13 39938529 39938605 -79806293 + AT_rich Low_complexity Low_complexity 1 76 0 210 231 0 0 chr13 39938605 39938670 -79806228 + (TA)n Simple_repeat Simple_repeat 2 66 0 1629 158 7 58 chr13 39938809 39939119 -79805779 - AluJo SINE Alu -18 294 1 2169 100 3 3 chr13 39939394 39939710 -79805188 - AluSg SINE Alu 0 310 1 906 141 6 24 chr13 39939718 39939888 -79805010 - L1MA6 LINE L1 0 6300 6134 349 218 158 45 chr13 39940176 39940309 -79804589 + MIR SINE MIR 104 251 -11 347 369 78 18 chr13 39940318 39940535 -79804363 + L3 LINE CR1 1329 1558 -19 370 167 0 15 chr13 39942553 39942619 -79802279 - AluSp/q SINE Alu -10 293 229 353 75 0 0 chr13 39942614 39942667 -79802231 + AluSp/q SINE Alu 251 303 0 * 1348 180 30 67 chr13 39942663 39942812 -79802086 - Charlie4a DNA MER1_type -1627 334 181 1909 132 7 30 chr13 39942812 39943115 -79801783 - AluSx SINE Alu -14 298 3 1348 180 30 67 chr13 39943115 39943293 -79801605 - Charlie4a DNA MER1_type -1780 181 19 668 332 94 17 chr13 39943349 39943924 -79800974 - L2 LINE L2 -675 2639 2021 1778 153 7 17 chr13 39944073 39944374 -79800524 + AluJb SINE Alu 1 298 -14 318 23 0 0 chr13 39944482 39944526 -79800372 - L1MB4 LINE L1 -1 6179 6136 692 180 0 9 chr13 39944548 39944659 -79800239 - FLAM_A SINE Alu -10 132 23 1026 187 30 38 chr13 39944671 39944830 -79800068 - L1MB4 LINE L1 -28 6152 5994 2738 161 29 84 chr13 39944830 39945006 -79799892 - L1MB4 LINE L1 -250 5930 5746 2695 146 36 5 chr13 39945006 39945444 -79799454 - LTR47A LTR ERVL 0 452 1 2738 161 29 84 chr13 39945444 39945548 -79799350 - L1MB4 LINE L1 -434 5746 5638 1935 127 0 17 chr13 39945548 39945840 -79799058 - AluSx SINE Alu -1 311 25 2738 161 29 84 chr13 39945840 39946290 -79798608 - L1MB4 LINE L1 -542 5638 5332 2279 117 0 7 chr13 39946319 39946627 -79798271 - AluSx SINE Alu -6 306 1 2193 116 13 3 chr13 39946637 39946947 -79797951 - AluSq SINE Alu 0 313 1 941 219 35 62 chr13 39946953 39947213 -79797685 - L1MB4 LINE L1 -1196 4950 4698 2180 103 0 39 chr13 39947290 39947601 -79797297 + AluSg SINE Alu 1 299 -11 1769 119 20 0 chr13 39947623 39947874 -79797024 - AluSx SINE Alu -56 256 1 2342 86 0 0 chr13 39948539 39948831 -79796067 - AluSg SINE Alu -18 292 1 2235 131 10 0 chr13 39949046 39949352 -79795546 + 7SLRNA srpRNA srpRNA 1 309 -11 1403 191 68 25 chr13 39949368 39949646 -79795252 + AluJo SINE Alu 1 290 -22 29 28 0 0 chr13 39949646 39949682 -79795216 + AT_rich Low_complexity Low_complexity 1 36 0 263 273 118 18 chr13 39950345 39950455 -79794443 - L2 LINE L2 0 3313 3193 1003 134 24 18 chr13 39950466 39950630 -79794268 - AluJo SINE Alu -147 165 1 2000 112 7 0 chr13 39950817 39951095 -79793803 + AluSq SINE Alu 12 291 -22 1202 115 6 23 chr13 39951172 39951346 -79793552 - AluSx SINE Alu -141 171 1 308 96 0 58 chr13 39951347 39951399 -79793499 - FLAM_A SINE Alu 0 133 85 918 264 75 17 chr13 39951462 39951754 -79793144 - MLT1J LTR MaLR -132 379 71 2310 106 7 0 chr13 39951805 39952107 -79792791 - AluSg SINE Alu -6 304 1 669 128 0 0 chr13 39952458 39952552 -79792346 + AluJ/FLAM SINE Alu 3 96 -216 1620 125 0 0 chr13 39952609 39952841 -79792057 + AluSg/x SINE Alu 81 312 0 1144 188 99 50 chr13 39952844 39953095 -79791803 + AluJo SINE Alu 1 269 -43 2658 81 27 48 chr13 39953095 39953313 -79791585 + THE1B LTR MaLR 1 209 -155 2009 127 13 10 chr13 39953313 39953613 -79791285 - AluSx SINE Alu -11 301 1 2658 81 27 48 chr13 39953613 39953766 -79791132 + THE1B LTR MaLR 209 364 0 1144 188 99 50 chr13 39953766 39953796 -79791102 + AluJo SINE Alu 269 296 -16 1869 145 103 16 chr13 39954360 39954670 -79790228 - MER1B DNA MER1_type 0 337 1 1289 157 15 114 chr13 39955804 39956128 -79788770 - AluJo SINE Alu -19 293 2 2445 81 10 0 chr13 39956826 39957135 -79787763 - AluSx SINE Alu 0 312 1 213 39 0 0 chr13 39958709 39958735 -79786163 + (CTG)n Simple_repeat Simple_repeat 1 26 0 240 258 157 0 chr13 39960246 39960335 -79784563 + MIR SINE MIR 109 211 -51 578 193 67 0 chr13 39960565 39960684 -79784214 - L1MC2 LINE L1 -37 6307 6181 189 0 0 0 chr13 39960684 39960705 -79784193 + (T)n Simple_repeat Simple_repeat 1 21 0 443 277 66 59 chr13 39961106 39961532 -79783366 + MER92C-int LTR ERV1 3304 3732 -3069 2273 80 0 42 chr13 39961685 39961997 -79782901 - AluSq SINE Alu -14 299 1 1367 197 61 0 chr13 39962223 39962502 -79782396 + MER92C-int LTR ERV1 738 1033 -3903 618 323 46 39 chr13 39963436 39963786 -79781112 + MER92C-int LTR ERV1 6191 6546 -255 2866 115 4 80 chr13 39963786 39964247 -79780651 + MSTB LTR MaLR 1 426 0 618 323 46 39 chr13 39964247 39964327 -79780571 + MER92C-int LTR ERV1 6546 6624 -177 1885 214 20 63 chr13 39964495 39965000 -79779898 + MER92C LTR ERV1 57 539 -15 1668 140 11 15 chr13 39965076 39965341 -79779557 + MER21A LTR ERV1 1 264 -667 3208 138 35 57 chr13 39965346 39965627 -79779271 + MER21A LTR ERV1 376 641 -290 2022 110 3 30 chr13 39965627 39965928 -79778970 + AluSx SINE Alu 1 293 -19 3208 138 35 57 chr13 39965928 39966212 -79778686 + MER21A LTR ERV1 641 929 -2 2921 221 46 68 chr13 39966218 39967400 -79777498 + L1ME2 LINE L1 5008 6154 -10 28 48 0 0 chr13 39967438 39967480 -79777418 + AT_rich Low_complexity Low_complexity 1 42 0 281 322 87 0 chr13 39967513 39967628 -79777270 + MIR SINE MIR 125 249 -13 2858 145 9 2 chr13 39968363 39968784 -79776114 - MSTB LTR MaLR -2 424 1 26 50 0 0 chr13 39969166 39969206 -79775692 + AT_rich Low_complexity Low_complexity 1 40 0 494 204 254 7 chr13 39969488 39969630 -79775268 + MER5A DNA MER1_type 13 189 0 2392 93 0 0 chr13 39969924 39970226 -79774672 - AluSq SINE Alu -11 302 1 220 146 57 32 chr13 39971111 39971234 -79773664 + (TATAA)n Simple_repeat Simple_repeat 5 130 0 27 29 0 0 chr13 39971271 39971305 -79773593 + AT_rich Low_complexity Low_complexity 1 34 0 2296 101 0 3 chr13 39971335 39971632 -79773266 - AluSq SINE Alu -17 296 1 3964 214 61 32 chr13 39972044 39972105 -79772793 - L1MC/D LINE L1 -598 5761 5703 1746 135 79 0 chr13 39972105 39972371 -79772527 + AluSx SINE Alu 1 287 -25 3964 214 61 32 chr13 39972371 39972747 -79772151 - L1MC/D LINE L1 -656 5703 5339 2465 139 15 105 chr13 39972747 39973222 -79771676 + MER61C LTR ERV1 3 434 0 3964 214 61 32 chr13 39973222 39974153 -79770745 - L1MC/D LINE L1 -1020 5339 4348 3336 125 34 43 chr13 39974153 39974182 -79770716 + LTR26B LTR ERV1 1 29 -502 2327 95 0 0 chr13 39974182 39974477 -79770421 - AluSg SINE Alu -15 295 1 3336 125 34 43 chr13 39974477 39974983 -79769915 + LTR26B LTR ERV1 29 531 0 3964 214 61 32 chr13 39974983 39975227 -79769671 - L1MC/D LINE L1 -2011 4348 4112 705 156 0 70 chr13 39975228 39975356 -79769542 + AluJo SINE Alu 102 220 -92 698 247 52 108 chr13 39975366 39975735 -79769163 + LTR4 LTR ERV1 10 357 -239 1090 209 20 62 chr13 39975821 39976113 -79768785 + LTR4 LTR ERV1 317 596 0 520 195 0 0 chr13 39976113 39976195 -79768703 + AluJ SINE Alu 213 294 -18 597 232 6 65 chr13 39976199 39976367 -79768531 - L1MC/D LINE L1 -2037 4109 3952 2679 181 4 9 chr13 39976398 39976852 -79768046 + LTR47A LTR ERVL 1 452 0 1351 166 36 23 chr13 39977149 39977450 -79767448 - LTR25 LTR ERV1 -10 784 480 328 141 141 0 chr13 39977420 39977484 -79767414 - MER51A LTR ERV1 -354 280 208 * 527 190 133 62 chr13 39977477 39977684 -79767214 - MER61E LTR ERV1 -484 85 1 344 210 51 65 chr13 39977774 39977912 -79766986 + MER4-int LTR ERV1 2151 2286 -2594 * 1476 248 43 43 chr13 39977887 39978310 -79766588 + MER4-int LTR ERV1 1851 2273 -4058 551 151 0 5 chr13 39978311 39978407 -79766491 + MER4-int LTR ERV1 2646 2726 -3220 271 179 0 18 chr13 39978433 39978489 -79766409 + MER4-int LTR ERV1 1181 1235 -3888 604 179 79 62 chr13 39978517 39978733 -79766165 + MER4-int LTR ERV1 1956 2746 -4012 1223 150 169 52 chr13 39978741 39979263 -79765635 + LTR29 LTR ERV1 1 616 -6 326 167 0 0 chr13 39979266 39979326 -79765572 + MER4-int LTR ERV1 3577 3636 -3901 752 203 96 137 chr13 39979326 39979826 -79765072 - LTR8 LTR ERV1 0 707 246 701 121 71 37 chr13 39980106 39980287 -79764611 + MER4B-int LTR ERV1 2779 3554 -2777 1091 181 0 11 chr13 39980287 39980469 -79764429 + AluJb SINE Alu 133 312 0 1663 165 45 37 chr13 39980482 39980873 -79764025 + MER4B-int LTR ERV1 2790 3306 -1977 917 169 33 11 chr13 39980873 39981056 -79763842 - MER4C LTR ERV1 0 465 279 6692 139 18 68 chr13 39981090 39981576 -79763322 - LTR49-int LTR ERV1 -2640 5480 4971 1838 173 17 0 chr13 39981576 39981877 -79763021 - AluSx SINE Alu -6 306 1 6692 139 18 68 chr13 39981877 39982339 -79762559 - LTR49-int LTR ERV1 -3149 4971 4487 2421 91 0 7 chr13 39982339 39982647 -79762251 + AluSg SINE Alu 1 306 -4 6692 139 18 68 chr13 39982647 39982890 -79762008 - LTR49-int LTR ERV1 -3633 4487 4357 2350 93 7 0 chr13 39982890 39983192 -79761706 - AluSp SINE Alu -9 304 1 6692 139 18 68 chr13 39983192 39983306 -79761592 - LTR49-int LTR ERV1 -3763 4357 4239 680 182 86 61 chr13 39983309 39983507 -79761391 - LTR49-int LTR ERV1 -1959 2921 2719 1404 154 36 128 chr13 39983527 39984044 -79760854 - LTR49-int LTR ERV1 -3808 3729 1833 325 243 32 57 chr13 39984054 39984261 -79760637 - MER34C LTR ERV1 -183 402 155 1539 252 80 84 chr13 39984261 39985177 -79759721 - LTR49-int LTR ERV1 -3512 2434 1516 378 0 0 0 chr13 39985177 39985219 -79759679 + (TG)n Simple_repeat Simple_repeat 2 43 0 1539 252 80 84 chr13 39985219 39985281 -79759617 - LTR49-int LTR ERV1 -4430 1516 1455 182 62 31 0 chr13 39985281 39985313 -79759585 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1539 252 80 84 chr13 39985313 39985366 -79759532 - LTR49-int LTR ERV1 -4491 1455 753 1016 182 80 99 chr13 39985367 39985779 -79759119 - LTR49-int LTR ERV1 -3015 1865 768 * 1378 169 19 71 chr13 39985776 39986183 -79758715 - LTR49-int LTR ERV1 -4880 2538 355 629 178 15 86 chr13 39986241 39986438 -79758460 - MER4A LTR ERV1 -479 185 3 9727 196 68 41 chr13 39986438 39987114 -79757784 + MER21-int LTR ERV1 282 938 -5755 3526 48 0 70 chr13 39987114 39987596 -79757302 + LTR7 LTR ERV1 1 448 -2 9727 196 68 41 chr13 39987596 39987819 -79757079 + MER21-int LTR ERV1 938 1154 -5539 2287 93 3 3 chr13 39987819 39988120 -79756778 + AluSg SINE Alu 3 303 -7 9727 196 68 41 chr13 39988120 39990337 -79754561 + MER21-int LTR ERV1 1154 6061 -632 1496 185 119 3 chr13 39990339 39990658 -79754240 + LTR47A LTR ERVL 1 356 -96 1562 192 16 19 chr13 39990658 39990965 -79753933 + AluJo SINE Alu 2 307 -5 393 195 38 19 chr13 39990965 39991080 -79753818 + GA-rich Low_complexity Low_complexity 1 121 -41 2331 89 0 0 chr13 39991080 39991372 -79753526 + AluSc SINE Alu 1 292 -17 393 195 38 19 chr13 39991372 39991415 -79753483 + GA-rich Low_complexity Low_complexity 121 162 0 285 29 0 0 chr13 39991416 39991450 -79753448 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 560 172 10 0 chr13 39991451 39991550 -79753348 + LTR47A LTR ERVL 351 450 -2 325 175 0 0 chr13 39991571 39991634 -79753264 - L1MB5 LINE L1 -8 6402 6340 3404 147 22 38 chr13 39991634 39992624 -79752274 - L1MB5 LINE L1 -315 6095 5125 2888 221 63 50 chr13 39992617 39993983 -79750915 - L1MB5 LINE L1 -3028 3354 1966 * 1746 167 0 7 chr13 39993997 39994284 -79750614 + AluJo SINE Alu 14 298 -14 1831 110 0 0 chr13 39994305 39994551 -79750347 + AluSg SINE Alu 1 246 -64 2389 101 7 0 chr13 39994599 39994907 -79749991 - AluSx SINE Alu -2 310 1 4069 237 55 36 chr13 39994929 39995081 -79749817 - L1MDa LINE L1 -2196 4448 4300 1691 183 73 14 chr13 39995081 39995425 -79749473 + MLT1A1 LTR MaLR 2 365 0 4069 237 55 36 chr13 39995425 39996008 -79748890 - L1MDa LINE L1 -2344 4300 3730 2575 71 0 0 chr13 39996008 39996319 -79748579 + AluY SINE Alu 1 311 0 4069 237 55 36 chr13 39996319 39996404 -79748494 - L1MDa LINE L1 -2914 3730 3648 1669 151 45 20 chr13 39996404 39996696 -79748202 - AluJo SINE Alu -13 299 1 4069 237 55 36 chr13 39996696 39997415 -79747483 - L1MDa LINE L1 -2996 3648 2877 2324 88 0 10 chr13 39997425 39997440 -79747458 - AluSg SINE Alu -3 307 293 187 43 0 0 chr13 39997440 39997463 -79747435 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2324 88 0 10 chr13 39997463 39997753 -79747145 - AluSg SINE Alu -17 293 5 2113 116 3 7 chr13 39998410 39998702 -79746196 - AluSq SINE Alu -22 291 1 2476 207 60 78 chr13 39998702 39999032 -79745866 - L1MDa LINE L1 -4378 2266 1932 1498 200 0 23 chr13 39999032 39999332 -79745566 + AluJo SINE Alu 1 293 -19 2476 207 60 78 chr13 39999332 39999492 -79745406 - L1MDa LINE L1 -4712 1932 1771 2465 71 0 7 chr13 39999492 39999800 -79745098 - AluY SINE Alu -4 307 2 2476 207 60 78 chr13 39999800 40000174 -79744724 - L1MDa LINE L1 -4873 1771 1423 1043 187 6 0 chr13 40000174 40000340 -79744558 - FAM SINE Alu -8 167 1 2476 207 60 78 chr13 40000340 40000630 -79744268 - L1MDa LINE L1 -5221 1423 1130 2289 103 3 0 chr13 40001247 40001549 -79743349 + AluSp SINE Alu 1 303 -10 1699 202 0 0 chr13 40001690 40001987 -79742911 - AluJo SINE Alu -15 297 1 22 35 0 0 chr13 40002413 40002442 -79742456 + AT_rich Low_complexity Low_complexity 1 29 0 6713 109 28 19 chr13 40002487 40003548 -79741350 - MER11C LTR ERVK 0 1071 1 796 169 0 0 chr13 40003993 40004111 -79740787 - FLAM_A SINE Alu -12 121 4 2213 104 0 0 chr13 40004420 40004707 -79740191 - AluSg1 SINE Alu -22 287 1 353 237 154 58 chr13 40005481 40005637 -79739261 - L2 LINE L2 0 3313 3143 2000 98 0 29 chr13 40005967 40006242 -79738656 + AluSx SINE Alu 1 267 -45 673 108 14 72 chr13 40006260 40006399 -79738499 + L1MD1 LINE L1 5698 5828 -414 3892 156 23 76 chr13 40006401 40007151 -79737747 - L1MB7 LINE L1 0 6184 5518 492 196 0 28 chr13 40007151 40007258 -79737640 - U13 snRNA snRNA 0 104 1 3892 156 23 76 chr13 40007258 40007621 -79737277 - L1MB7 LINE L1 -666 5518 5137 1322 245 30 53 chr13 40007635 40008104 -79736794 - L1MDa LINE L1 -6070 472 15 2067 170 57 48 chr13 40008111 40008212 -79736686 + L1MD2 LINE L1 5827 5926 -433 1707 162 42 21 chr13 40008212 40008496 -79736402 - AluJo SINE Alu -18 294 5 2067 170 57 48 chr13 40008496 40008605 -79736293 + L1MD2 LINE L1 5926 6032 -327 2489 80 3 3 chr13 40008605 40008916 -79735982 + AluSp SINE Alu 1 311 -2 2067 170 57 48 chr13 40008916 40009209 -79735689 + L1MD2 LINE L1 6032 6336 -23 249 83 0 0 chr13 40009753 40009789 -79735109 + (TA)n Simple_repeat Simple_repeat 2 37 0 1673 155 24 34 chr13 40009789 40010080 -79734818 - AluJo SINE Alu -24 288 1 1871 112 4 4 chr13 40010461 40010721 -79734177 - AluSx SINE Alu -14 298 39 38 0 0 0 chr13 40011131 40011169 -79733729 + AT_rich Low_complexity Low_complexity 1 38 0 201 187 0 53 chr13 40011209 40011284 -79733614 + A-rich Low_complexity Low_complexity 2 72 0 997 122 0 0 chr13 40011513 40011644 -79733254 + AluJb SINE Alu 3 133 -179 212 398 11 11 chr13 40011732 40011820 -79733078 + MIR SINE MIR 34 121 -87 610 129 0 20 chr13 40011841 40011942 -79732956 + AluJb SINE Alu 205 303 -9 21 0 0 0 chr13 40012046 40012067 -79732831 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 40012955 40012983 -79731915 + AT_rich Low_complexity Low_complexity 1 28 0 401 293 106 35 chr13 40012989 40013187 -79731711 + MLT1J LTR MaLR 51 262 -249 395 341 72 47 chr13 40013514 40013875 -79731023 + L2 LINE L2 2544 2913 -401 1001 234 137 15 chr13 40014211 40014548 -79730350 + MLT1J LTR MaLR 1 378 -133 913 104 0 0 chr13 40014825 40014940 -79729958 + AluSg SINE Alu 1 115 -195 2539 58 0 10 chr13 40016087 40016397 -79728501 - AluSc SINE Alu 0 309 3 283 266 125 0 chr13 40016989 40017053 -79727845 + MIR SINE MIR 35 106 -102 231 36 0 0 chr13 40018716 40018744 -79726154 + (T)n Simple_repeat Simple_repeat 1 28 0 213 39 0 0 chr13 40020455 40020481 -79724417 + (CTG)n Simple_repeat Simple_repeat 1 26 0 685 79 0 20 chr13 40021922 40022023 -79722875 - AluJ/FLAM SINE Alu -213 99 1 2892 76 19 0 chr13 40022766 40023136 -79721762 + MER51B LTR ERV1 1 377 0 1421 201 46 26 chr13 40023507 40023811 -79721087 - AluJo SINE Alu -1 311 2 855 138 209 9 chr13 40023847 40024057 -79720841 - L1MB3 LINE L1 -12 6171 5920 637 188 86 0 chr13 40024172 40024300 -79720598 + MER3 DNA MER1_type 3 141 -68 890 219 42 50 chr13 40024312 40024502 -79720396 + L1ME2 LINE L1 4867 5054 -1092 2507 87 0 0 chr13 40024502 40024813 -79720085 + AluY SINE Alu 1 311 0 890 219 42 50 chr13 40024813 40025001 -79719897 + L1ME2 LINE L1 5054 5242 -904 984 265 57 0 chr13 40025012 40025291 -79719607 + L1ME2 LINE L1 5418 5712 -452 2159 116 3 0 chr13 40025518 40025811 -79719087 + AluSx SINE Alu 1 294 -18 270 210 0 16 chr13 40025902 40025964 -79718934 - MER41B LTR ERV1 -301 334 274 1439 176 34 81 chr13 40026135 40026214 -79718684 + L1ME2 LINE L1 5703 5784 -380 1996 129 40 64 chr13 40026214 40026587 -79718311 - THE1B LTR MaLR 0 364 1 1439 176 34 81 chr13 40026587 40026979 -79717919 + L1ME2 LINE L1 5784 6152 -12 2109 130 25 91 chr13 40028058 40028437 -79716461 + MSTC LTR MaLR 1 354 -74 2054 114 24 3 chr13 40028437 40028734 -79716164 - AluSx SINE Alu -9 303 1 2109 130 25 91 chr13 40028734 40028805 -79716093 + MSTC LTR MaLR 354 428 0 1814 88 69 47 chr13 40028968 40029266 -79715632 - AluY SINE Alu 0 304 1 570 172 0 0 chr13 40029270 40029363 -79715535 - FLAM_A SINE Alu -8 134 42 22 0 0 0 chr13 40029368 40029390 -79715508 + AT_rich Low_complexity Low_complexity 1 22 0 1074 176 0 0 chr13 40029414 40029579 -79715319 + AluJb SINE Alu 135 299 -13 498 182 15 45 chr13 40029581 40029713 -79715185 - L1ME3A LINE L1 -15 6155 6028 255 177 165 76 chr13 40030187 40030266 -79714632 + MER5A DNA MER1_type 9 94 -95 2297 103 0 10 chr13 40030280 40030581 -79714317 - AluSg SINE Alu -8 302 5 1746 168 42 3 chr13 40030586 40030871 -79714027 - AluJo SINE Alu -16 296 1 1079 252 77 49 chr13 40030998 40031501 -79713397 - MLT1F1 LTR MaLR -40 527 6 309 304 222 24 chr13 40031506 40031608 -79713290 + L1MC4 LINE L1 7248 7329 -713 3386 157 70 11 chr13 40031608 40032232 -79712666 - MER67B LTR ERV1 0 661 1 309 304 222 24 chr13 40032232 40032336 -79712562 + L1MC4 LINE L1 7329 7495 -547 1916 176 83 8 chr13 40032365 40032485 -79712413 + MSTA LTR MaLR 1 111 -317 2470 78 3 7 chr13 40032485 40032792 -79712106 - AluSp SINE Alu -7 306 1 1916 176 83 8 chr13 40032792 40033069 -79711829 + MSTA LTR MaLR 111 428 0 272 226 36 12 chr13 40033125 40033209 -79711689 + L1MC4 LINE L1 7492 7577 -465 934 170 114 55 chr13 40033230 40033591 -79711307 + MSTC LTR MaLR 1 425 -3 461 249 114 72 chr13 40033607 40033940 -79710958 + L1MC4 LINE L1 7621 7967 -75 3227 98 64 2 chr13 40033968 40034500 -79710398 - L1MA2 LINE L1 0 7723 7159 14762 160 15 36 chr13 40034502 40037633 -79707265 - L1MA2 LINE L1 -726 6998 3804 931 136 0 0 chr13 40037633 40037765 -79707133 - FLAM_C SINE Alu -1 132 1 14762 160 15 36 chr13 40037765 40037963 -79706935 - L1MA2 LINE L1 -3920 3804 3753 2517 81 7 0 chr13 40037963 40038272 -79706626 - AluY SINE Alu 0 311 1 14762 160 15 36 chr13 40038272 40038559 -79706339 - L1MA2 LINE L1 -3971 3753 3462 * 16454 132 95 13 chr13 40038553 40038755 -79706143 - L1MA2 LINE L1 -4314 3251 3067 2039 135 14 7 chr13 40038755 40039051 -79705847 - AluSp SINE Alu -15 298 1 16454 132 95 13 chr13 40039051 40039646 -79705252 - L1MA2 LINE L1 -4498 3067 2523 215 61 30 0 chr13 40039646 40039679 -79705219 + (TG)n Simple_repeat Simple_repeat 1 34 0 2072 121 0 0 chr13 40039679 40039959 -79704939 - AluSq SINE Alu -33 280 1 16454 132 95 13 chr13 40039959 40042149 -79702749 - L1MA2 LINE L1 -5041 2524 15 1888 164 11 0 chr13 40042179 40042466 -79702432 + AluJo SINE Alu 1 290 -22 2267 107 0 7 chr13 40042472 40042770 -79702128 + AluSg1 SINE Alu 1 296 -13 2292 100 6 6 chr13 40042939 40043250 -79701648 - AluSx SINE Alu -1 311 1 224 381 36 0 chr13 40043298 40043382 -79701516 + L2 LINE L2 3100 3186 -86 213 39 0 0 chr13 40043495 40043521 -79701377 + (A)n Simple_repeat Simple_repeat 1 26 0 568 189 47 0 chr13 40043733 40043839 -79701059 - FLAM_C SINE Alu -18 125 15 24 0 0 0 chr13 40043941 40043965 -79700933 + AT_rich Low_complexity Low_complexity 1 24 0 286 245 0 101 chr13 40045117 40045276 -79699622 + L1MC4 LINE L1 7837 7979 -63 1762 137 23 50 chr13 40045295 40045594 -79699304 - AluJb SINE Alu -21 291 1 2379 90 0 0 chr13 40046179 40046478 -79698420 + AluSx SINE Alu 1 299 -13 2307 117 3 0 chr13 40046887 40047194 -79697704 + AluSp SINE Alu 1 308 -5 2062 118 27 7 chr13 40047221 40047517 -79697381 + AluSx SINE Alu 5 306 -6 2399 70 3 10 chr13 40048327 40048628 -79696270 - AluY SINE Alu -12 299 1 22 0 0 0 chr13 40049436 40049458 -79695440 + AT_rich Low_complexity Low_complexity 1 22 0 1636 209 133 57 chr13 40049568 40050147 -79694751 + MLT1E3 LTR MaLR 1 623 -1 203 296 235 30 chr13 40051626 40051758 -79693140 + MER5A DNA MER1_type 20 178 0 394 194 107 10 chr13 40051776 40051879 -79693019 + MER5B DNA MER1_type 60 172 -6 2143 124 7 0 chr13 40052100 40052399 -79692499 + AluSx SINE Alu 1 301 -11 1283 106 0 6 chr13 40052831 40053001 -79691897 + AluSc SINE Alu 133 301 -8 1792 131 65 3 chr13 40054179 40054469 -79690429 + AluSc SINE Alu 1 308 -1 1851 157 10 16 chr13 40055455 40055768 -79689130 + AluJo SINE Alu 1 311 -1 1964 114 26 26 chr13 40056365 40056706 -79688192 - L1MA5 LINE L1 -1 6299 5959 2055 127 0 10 chr13 40056989 40057288 -79687610 + AluSx SINE Alu 1 296 -16 226 223 75 53 chr13 40057325 40057419 -79687479 + L1ME4a LINE L1 5955 6050 -71 2386 86 3 0 chr13 40057432 40057734 -79687164 - AluSp SINE Alu -10 303 1 2232 107 0 10 chr13 40057897 40058196 -79686702 - AluSq SINE Alu -17 296 1 389 300 75 33 chr13 40058312 40058552 -79686346 + HAL1 LINE L1 162 411 -2096 939 253 158 40 chr13 40058705 40058929 -79685969 + HAL1 LINE L1 649 845 -1662 1547 168 0 96 chr13 40058929 40059262 -79685636 + AluJb SINE Alu 1 301 -11 939 253 158 40 chr13 40059262 40059994 -79684904 + HAL1 LINE L1 845 1894 -613 480 229 42 0 chr13 40060227 40060371 -79684527 + HAL1 LINE L1 2225 2374 -133 319 240 26 162 chr13 40060394 40060548 -79684350 + HAL1 LINE L1 2353 2485 -22 26 64 0 0 chr13 40060553 40060600 -79684298 + AT_rich Low_complexity Low_complexity 1 47 0 1903 165 0 3 chr13 40061352 40061649 -79683249 - AluJo SINE Alu -16 296 1 965 225 5 10 chr13 40061796 40062005 -79682893 - MER82 DNA MER2_type -2 651 444 383 288 105 21 chr13 40062039 40062230 -79682668 + MIR SINE MIR 8 214 -48 1223 129 0 0 chr13 40062263 40062426 -79682472 - FRAM SINE Alu -14 162 1 382 213 0 0 chr13 40062494 40062569 -79682329 - MER82 DNA MER2_type -577 76 2 1212 180 164 22 chr13 40062607 40062996 -79681902 + MLT1C LTR MaLR 18 461 -6 255 93 0 0 chr13 40062999 40063042 -79681856 + (CA)n Simple_repeat Simple_repeat 2 44 0 704 124 0 18 chr13 40063065 40063178 -79681720 - AluSg/x SINE Alu -3 307 197 309 109 0 0 chr13 40063193 40063248 -79681650 + (CA)n Simple_repeat Simple_repeat 2 56 0 1944 131 3 11 chr13 40063260 40063583 -79681315 - AluSg SINE Alu 0 321 1 2034 153 0 3 chr13 40064106 40064413 -79680485 + AluJb SINE Alu 1 306 -6 1923 232 82 102 chr13 40064479 40064672 -79680226 + L1MC4 LINE L1 6118 6313 -1729 2299 101 0 10 chr13 40064672 40064970 -79679928 - AluSx SINE Alu -17 295 1 1923 232 82 102 chr13 40064970 40066293 -79678605 + L1MC4 LINE L1 6313 7694 -348 695 186 17 8 chr13 40066293 40066411 -79678487 + FLAM_A SINE Alu 2 120 -13 1923 232 82 102 chr13 40066411 40066737 -79678161 + L1MC4 LINE L1 7694 8025 -17 2223 107 0 7 chr13 40067049 40067347 -79677551 + AluSx SINE Alu 1 296 -16 235 164 16 0 chr13 40067918 40067979 -79676919 + L1ME4a LINE L1 6058 6119 -2 1961 147 0 3 chr13 40068214 40068514 -79676384 - AluSg SINE Alu -11 299 1 275 252 9 61 chr13 40068611 40068726 -79676172 - L1ME3A LINE L1 -100 6070 5962 1855 233 76 60 chr13 40068802 40069741 -79675157 - L1MC5 LINE L1 -427 7534 6611 1781 213 95 29 chr13 40069741 40069972 -79674926 + LTR40a LTR ERVL 1 215 -304 1778 153 13 45 chr13 40069972 40070109 -79674789 + AluJo SINE Alu 1 141 -171 2322 106 0 6 chr13 40070109 40070421 -79674477 + AluSg SINE Alu 1 310 0 1778 153 13 45 chr13 40070421 40070596 -79674302 + AluJo SINE Alu 141 303 -9 1781 213 95 29 chr13 40070596 40070847 -79674051 + LTR40a LTR ERVL 215 515 -4 1855 233 76 60 chr13 40070847 40070876 -79674022 - L1MC5 LINE L1 -1350 6611 6553 470 297 87 32 chr13 40071224 40071571 -79673327 - HAL1b LINE L1 -690 658 293 1521 229 151 13 chr13 40071663 40072134 -79672764 + MLT1F LTR MaLR 7 542 0 1776 153 10 17 chr13 40072420 40072715 -79672183 - AluJb SINE Alu -19 293 1 347 274 145 8 chr13 40074040 40074157 -79670741 + MIR SINE MIR 41 173 -89 270 244 13 26 chr13 40074255 40074333 -79670565 + MIR SINE MIR 157 233 -29 5019 171 30 21 chr13 40074380 40075348 -79669550 - ERVL LTR ERVL -3003 2761 1785 1779 136 0 0 chr13 40075349 40075592 -79669306 - AluSx SINE Alu -69 243 1 1190 207 11 11 chr13 40075592 40075853 -79669045 - ERVL LTR ERVL -4159 1605 1345 2431 78 0 0 chr13 40076430 40076725 -79668173 + AluY SINE Alu 1 295 -16 1981 134 50 3 chr13 40076783 40077081 -79667817 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 40077157 40077178 -79667720 + AT_rich Low_complexity Low_complexity 1 21 0 1866 112 101 0 chr13 40077665 40077933 -79666965 - AluSg SINE Alu -15 295 1 528 262 61 0 chr13 40078120 40078284 -79666614 + MIR SINE MIR 2 175 -87 234 0 0 0 chr13 40078466 40078492 -79666406 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 2138 120 7 0 chr13 40079055 40079347 -79665551 - AluSx SINE Alu -18 294 1 301 256 165 8 chr13 40082226 40082359 -79662539 - Charlie8 DNA MER1_type -2165 252 99 995 175 30 12 chr13 40082382 40082548 -79662350 - FAM SINE Alu -6 169 1 2109 136 0 0 chr13 40082577 40082872 -79662026 + AluSx SINE Alu 1 295 -17 383 386 43 5 chr13 40083258 40083468 -79661430 - L2 LINE L2 -40 3232 3015 2398 78 3 0 chr13 40083496 40083791 -79661107 - AluSg SINE Alu -14 296 1 292 349 186 37 chr13 40083995 40084350 -79660548 - L2 LINE L2 -10 3262 2855 468 246 102 0 chr13 40084631 40084749 -79660149 + MIR SINE MIR 13 142 -120 1348 164 0 9 chr13 40084768 40084981 -79659917 + AluJo SINE Alu 86 296 -16 452 210 34 17 chr13 40084989 40085108 -79659790 + MIR SINE MIR 142 262 0 449 111 0 0 chr13 40085652 40085715 -79659183 + FRAM/FAM SINE Alu 20 82 -94 201 108 0 0 chr13 40085731 40085768 -79659130 + (A)n Simple_repeat Simple_repeat 1 37 0 1757 191 63 14 chr13 40085769 40086585 -79658313 + L1MD3 LINE L1 4969 5403 -743 2353 80 3 10 chr13 40086585 40086897 -79658001 + AluSx SINE Alu 1 310 -2 227 345 0 89 chr13 40086912 40087115 -79657783 + L2 LINE L2 3004 3188 -84 559 177 92 46 chr13 40087410 40087540 -79657358 + FRAM SINE Alu 25 160 -16 2170 111 0 0 chr13 40088219 40088516 -79656382 + AluSq SINE Alu 1 297 -16 255 336 85 44 chr13 40088764 40088943 -79655955 - MIR3 SINE MIR -3 205 17 2193 111 3 10 chr13 40089223 40089529 -79655369 + AluSx SINE Alu 2 305 -7 350 254 22 15 chr13 40089530 40089664 -79655234 + L1ME4a LINE L1 5986 6120 -1 669 202 8 0 chr13 40089847 40089971 -79654927 + FLAM_A SINE Alu 1 125 -8 207 0 0 0 chr13 40090971 40090994 -79653904 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 40091373 40091394 -79653504 + AT_rich Low_complexity Low_complexity 1 21 0 626 243 136 15 chr13 40091804 40092010 -79652888 - MIR SINE MIR -27 235 5 522 254 40 8 chr13 40092045 40092171 -79652727 - L2 LINE L2 -2 3311 3182 2360 85 7 0 chr13 40092308 40092603 -79652295 + AluSp SINE Alu 1 297 -16 1093 189 14 112 chr13 40092672 40093007 -79651891 + MLT1A2 LTR MaLR 30 396 22 2359 101 3 0 chr13 40093007 40093314 -79651584 - AluSc SINE Alu -1 308 1 534 135 216 36 chr13 40093314 40093425 -79651473 - AluJo/FLAM SINE Alu -171 131 1 1093 189 14 112 chr13 40093425 40093453 -79651445 + MLT1A2 LTR MaLR 329 358 -16 1908 166 10 0 chr13 40093497 40093799 -79651099 + AluSx SINE Alu 1 305 -7 1082 183 66 87 chr13 40093835 40093880 -79651018 - L1MC5 LINE L1 -315 7646 7602 2420 58 3 16 chr13 40093880 40094189 -79650709 + AluY SINE Alu 2 306 -5 1082 183 66 87 chr13 40094189 40094673 -79650225 - L1MC5 LINE L1 -359 7602 7128 1684 191 17 0 chr13 40094754 40095042 -79649856 + AluJb SINE Alu 1 293 -19 22 35 0 0 chr13 40095090 40095119 -79649779 + AT_rich Low_complexity Low_complexity 1 29 0 266 73 24 0 chr13 40095119 40095160 -79649738 - AluJb SINE Alu -171 131 90 1063 138 0 16 chr13 40095162 40095340 -79649558 - LTR26E LTR ERV1 -283 339 165 373 57 0 0 chr13 40095340 40095393 -79649505 + LTR9 LTR ERV1 1 53 -559 1204 78 10 10 chr13 40095393 40095603 -79649295 - MER4A-int LTR ERV1 -1665 4832 3286 940 150 0 0 chr13 40095603 40095743 -79649155 + AluSg/x SINE Alu 173 312 0 3461 132 76 48 chr13 40095743 40096353 -79648545 - MER4A-int LTR ERV1 -2943 3655 3011 2264 122 0 10 chr13 40096353 40096665 -79648233 - AluSg SINE Alu -1 309 1 3461 132 76 48 chr13 40096665 40096948 -79647950 - MER4A-int LTR ERV1 -3587 3011 2737 1424 114 84 0 chr13 40096948 40097185 -79647713 + LTR8 LTR ERV1 1 257 -434 3831 96 65 7 chr13 40097185 40097891 -79647007 - MER4A-int LTR ERV1 -4103 2495 1749 2128 110 10 16 chr13 40097896 40098206 -79646692 - AluSq SINE Alu -5 308 1 342 0 0 0 chr13 40098222 40098260 -79646638 + (CA)n Simple_repeat Simple_repeat 2 39 0 4256 114 21 9 chr13 40098264 40099151 -79645747 - MER4A-int LTR ERV1 -5616 1142 190 1407 235 70 25 chr13 40099156 40099514 -79645384 - MER4A-int LTR ERV1 -4107 2224 1851 2363 147 51 77 chr13 40099573 40100212 -79644686 - MER4A-int LTR ERV1 -5761 837 42 2495 61 0 0 chr13 40100212 40100509 -79644389 + AluY SINE Alu 1 297 -14 2363 147 51 77 chr13 40100509 40100550 -79644348 - MER4A-int LTR ERV1 -6556 42 1 1384 137 22 142 chr13 40100553 40100746 -79644152 - MER4A LTR ERV1 0 748 534 2239 80 4 0 chr13 40100746 40101022 -79643876 + AluSp SINE Alu 24 300 -13 1384 137 22 142 chr13 40101022 40101217 -79643681 - MER4A LTR ERV1 -214 534 261 664 100 0 20 chr13 40101217 40101317 -79643581 - MER4A LTR ERV1 -566 98 1 * 858 152 7 26 chr13 40101317 40101465 -79643433 - LTR26B LTR ERV1 -386 145 1 524 208 110 29 chr13 40101552 40101725 -79643173 - LTR37A LTR ERV1 0 426 240 620 149 9 28 chr13 40101730 40101829 -79643069 + MER75 DNA T2_type 1 99 -415 199 0 0 61 chr13 40101829 40101862 -79643036 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1212 133 118 0 chr13 40101885 40102080 -79642818 - AluSx SINE Alu -94 218 1 2863 102 19 21 chr13 40102080 40102373 -79642525 + MER75 DNA T2_type 94 386 -128 2319 85 0 0 chr13 40102373 40102667 -79642231 - AluY SINE Alu -17 294 1 2232 116 0 3 chr13 40102667 40102960 -79641938 - AluSx SINE Alu -20 292 1 2863 102 19 21 chr13 40102960 40103088 -79641810 + MER75 DNA T2_type 679 514 0 500 198 45 9 chr13 40103115 40103226 -79641672 - LTR37A LTR ERV1 -229 197 83 2145 129 0 3 chr13 40103345 40103639 -79641259 - AluSx SINE Alu -19 293 1 288 217 0 0 chr13 40103649 40103695 -79641203 - L2 LINE L2 -21 3292 3247 3770 124 144 17 chr13 40103726 40104297 -79640601 + LTR8A LTR ERV1 1 665 -62 1933 142 3 17 chr13 40104297 40104599 -79640299 - AluJb SINE Alu -14 298 1 3770 124 144 17 chr13 40104599 40104672 -79640226 + LTR8A LTR ERV1 665 727 0 2828 166 62 2 chr13 40104672 40105133 -79639765 - MER21B LTR ERV1 -371 492 1 678 146 6 4 chr13 40105207 40105390 -79639508 - MER21B-int LTR ERV1 -56 4135 3873 2404 103 65 0 chr13 40105402 40105743 -79639155 - MER51B LTR ERV1 0 377 15 1049 162 57 29 chr13 40105748 40105958 -79638940 - MER21B-int LTR ERV1 -323 3868 3653 2141 113 44 76 chr13 40105958 40106143 -79638755 + MER4B LTR ERV1 1 190 -420 2333 118 0 3 chr13 40106143 40106457 -79638441 - AluSq SINE Alu 0 313 1 2141 113 44 76 chr13 40106457 40106680 -79638218 + MER4B LTR ERV1 190 396 -214 5598 65 18 22 chr13 40106682 40107105 -79637793 + MER4E LTR ERV1 1 421 -345 2110 125 3 0 chr13 40107105 40107402 -79637496 - AluSg SINE Alu -12 298 1 5598 65 18 22 chr13 40107402 40107742 -79637156 + MER4E LTR ERV1 421 761 -5 1494 108 23 9 chr13 40107741 40107955 -79636943 + MER4E LTR ERV1 563 779 0 * 5140 166 24 38 chr13 40107955 40108879 -79636019 - MER21B-int LTR ERV1 -535 3656 2746 2528 62 0 7 chr13 40109022 40109326 -79635572 + AluY SINE Alu 1 302 -9 1046 195 29 10 chr13 40109426 40109631 -79635267 + AluJo SINE Alu 86 294 -18 409 248 52 46 chr13 40109725 40109878 -79635020 + LTR38 LTR ERV1 403 556 0 5622 186 43 23 chr13 40109878 40110753 -79634145 - MER21B-int LTR ERV1 -1442 2749 1846 2543 21 41 0 chr13 40110753 40111044 -79633854 - AluY SINE Alu -8 303 1 5622 186 43 23 chr13 40111044 40111248 -79633650 - MER21B-int LTR ERV1 -2345 1846 1648 476 151 0 0 chr13 40111294 40111367 -79633531 + AluJo SINE Alu 68 140 -172 1825 108 77 39 chr13 40111371 40111657 -79633241 + AluSx SINE Alu 1 297 -15 525 118 0 0 chr13 40111660 40111736 -79633162 + AluJ/FRAM SINE Alu 232 307 -5 427 140 0 0 chr13 40111809 40111866 -79633032 - AluSc SINE Alu -26 283 227 1802 126 4 0 chr13 40111866 40112120 -79632778 - AluSq SINE Alu -58 255 1 2459 159 128 0 chr13 40112126 40112565 -79632333 + LTR44 LTR ERV1 25 519 0 2159 78 55 42 chr13 40112966 40113274 -79631624 + AluSx SINE Alu 1 312 0 2416 134 98 3 chr13 40114273 40114662 -79630236 - MSTB LTR MaLR 0 426 1 9701 98 8 21 chr13 40115751 40116400 -79628498 + HSMAR1 DNA Mariner 1 657 -630 2196 112 7 10 chr13 40116400 40116703 -79628195 - AluSx SINE Alu -10 302 1 9701 98 8 21 chr13 40116703 40117254 -79627644 + HSMAR1 DNA Mariner 657 1214 -73 2461 67 0 10 chr13 40117254 40117566 -79627332 - AluY SINE Alu -2 309 1 2217 105 0 3 chr13 40117566 40117860 -79627038 - AluSg SINE Alu -17 293 1 9701 98 8 21 chr13 40117860 40117960 -79626938 + HSMAR1 DNA Mariner 1212 1286 -1 2542 71 0 10 chr13 40117978 40118289 -79626609 + AluSp SINE Alu 1 308 -5 1764 187 7 0 chr13 40118343 40118643 -79626255 - AluJb SINE Alu -10 302 1 813 222 10 10 chr13 40119064 40119258 -79625640 + LOR1-int LTR ERV1 1147 1340 -3531 830 164 5 72 chr13 40119339 40119470 -79625428 + LOR1-int LTR ERV1 1374 1489 -3382 2477 73 10 0 chr13 40119470 40119771 -79625127 + AluY SINE Alu 1 304 -7 830 164 5 72 chr13 40119771 40119834 -79625064 + LOR1-int LTR ERV1 1489 1555 -3316 1101 189 7 65 chr13 40119835 40120110 -79624788 + AluJo SINE Alu 31 289 -23 3502 184 84 68 chr13 40120112 40120320 -79624578 + LOR1-int LTR ERV1 1407 1610 -3261 189 0 0 0 chr13 40120320 40120341 -79624557 + (TG)n Simple_repeat Simple_repeat 2 22 0 3502 184 84 68 chr13 40120341 40121089 -79623809 + LOR1-int LTR ERV1 1610 2494 -2377 455 171 79 66 chr13 40121139 40121291 -79623607 + LOR1-int LTR ERV1 1596 1749 -6371 2429 101 0 0 chr13 40121305 40121612 -79623286 + AluSc SINE Alu 1 307 -2 1425 176 43 109 chr13 40121620 40122205 -79622693 + LOR1-int LTR ERV1 1930 2475 -4283 880 168 15 50 chr13 40122292 40122494 -79622404 + LOR1-int LTR ERV1 3536 3730 -2868 1433 156 53 29 chr13 40122543 40122931 -79621967 + LOR1-int LTR ERV1 2474 4657 -1941 861 221 52 0 chr13 40122951 40123105 -79621793 - FRAM SINE Alu -4 162 1 1420 214 27 10 chr13 40123113 40123407 -79621491 - AluJo SINE Alu -7 305 7 699 208 0 8 chr13 40123416 40123541 -79621357 - FLAM_C SINE Alu -9 124 1 786 199 63 101 chr13 40123543 40123890 -79621008 + MER31-int LTR ERV1 2729 3036 -1900 * 1986 170 87 48 chr13 40123883 40124402 -79620496 + MER31-int LTR ERV1 4304 4842 -1489 1256 190 69 84 chr13 40124399 40124731 -79620167 - LTR56-int LTR ERV1 -3924 2407 2081 * 1946 151 3 3 chr13 40124745 40125043 -79619855 - AluSx SINE Alu -14 298 1 252 250 19 74 chr13 40125997 40126065 -79618833 + GA-rich Low_complexity Low_complexity 1 62 -40 2019 117 28 3 chr13 40126065 40126272 -79618626 + AluSx SINE Alu 1 218 -94 189 0 0 0 chr13 40126272 40126293 -79618605 + (TG)n Simple_repeat Simple_repeat 1 21 0 2019 117 28 3 chr13 40126293 40126376 -79618522 + AluSx SINE Alu 218 298 -14 252 250 19 74 chr13 40126376 40126415 -79618483 + GA-rich Low_complexity Low_complexity 62 102 0 1665 209 72 32 chr13 40126730 40127306 -79617592 - LTR56-int LTR ERV1 -4378 745 1 579 149 26 6 chr13 40127306 40127451 -79617447 - LTR56 LTR ERV1 0 467 318 2461 67 0 0 chr13 40127472 40127772 -79617126 + AluY SINE Alu 1 300 -11 584 183 135 0 chr13 40127772 40127876 -79617022 - AluJo/FLAM SINE Alu -193 119 2 1976 95 51 14 chr13 40127877 40128173 -79616725 - LTR23 LTR ERV1 -130 307 1 323 239 76 0 chr13 40128176 40128268 -79616630 + MIR SINE MIR 149 247 -15 1523 186 249 57 chr13 40128398 40128633 -79616265 - LTR48 LTR ERV1 -6 781 593 2152 134 0 0 chr13 40128633 40128931 -79615967 + AluSx SINE Alu 1 298 -14 1523 186 249 57 chr13 40128931 40129188 -79615710 - LTR48 LTR ERV1 -194 593 387 2152 104 0 11 chr13 40129188 40129497 -79615401 - AluSx SINE Alu 0 306 1 1523 186 249 57 chr13 40129497 40129657 -79615241 - LTR48 LTR ERV1 -400 387 1 1972 137 17 10 chr13 40129692 40129992 -79614906 - AluJo SINE Alu -10 302 1 224 30 30 0 chr13 40130248 40130281 -79614617 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 193 313 84 23 chr13 40130379 40130510 -79614388 - L2 LINE L2 -944 2370 2232 203 289 62 52 chr13 40130536 40130633 -79614265 + L2 LINE L2 3205 3302 -11 278 225 94 69 chr13 40130701 40130773 -79614125 - L2 LINE L2 -1219 2095 2026 3372 145 53 8 chr13 40130773 40131303 -79613595 + MER41C LTR ERV1 1 554 0 278 225 94 69 chr13 40131303 40131390 -79613508 - L2 LINE L2 -1288 2026 1932 889 204 7 0 chr13 40131442 40131594 -79613304 - FAM SINE Alu -20 165 13 2261 189 38 5 chr13 40131671 40132120 -79612778 - MER101 LTR ERV1 0 474 11 404 274 36 143 chr13 40132244 40132274 -79612624 + L2 LINE L2 2667 2699 -614 1521 191 0 4 chr13 40132274 40132525 -79612373 - AluJb SINE Alu -62 250 1 404 274 36 143 chr13 40132525 40132611 -79612287 + L2 LINE L2 2699 2793 -520 198 71 0 0 chr13 40132611 40132639 -79612259 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 404 274 36 143 chr13 40132639 40133150 -79611748 + L2 LINE L2 2793 3219 -94 2545 52 0 7 chr13 40133268 40133576 -79611322 + AluY SINE Alu 1 306 -5 2482 106 116 40 chr13 40134335 40134512 -79610386 + MSTA LTR MaLR 1 163 -265 2055 116 28 0 chr13 40134512 40134796 -79610102 + AluSg SINE Alu 2 293 -17 2482 106 116 40 chr13 40134796 40135016 -79609882 + MSTA LTR MaLR 163 428 0 3583 126 18 27 chr13 40135881 40136360 -79608538 - L1PA15 LINE L1 0 6165 5690 1403 133 152 4 chr13 40136360 40136509 -79608389 - AluSq SINE Alu -19 294 168 378 0 0 0 chr13 40136509 40136551 -79608347 + (TG)n Simple_repeat Simple_repeat 2 43 0 1403 133 152 4 chr13 40136551 40136657 -79608241 - AluSq SINE Alu -145 168 1 3583 126 18 27 chr13 40136657 40136724 -79608174 - L1PA15 LINE L1 -475 5690 5624 2237 107 3 0 chr13 40136885 40137184 -79607714 + AluSp SINE Alu 4 303 -10 2104 84 3 14 chr13 40137556 40137842 -79607056 + AluSc SINE Alu 1 283 -26 33 0 0 0 chr13 40140129 40140162 -79604736 + AT_rich Low_complexity Low_complexity 1 33 0 693 198 0 8 chr13 40140406 40140527 -79604371 - FLAM_C SINE Alu -13 120 1 248 266 85 43 chr13 40140891 40140985 -79603913 - MIR SINE MIR -61 147 50 959 113 35 0 chr13 40141027 40141168 -79603730 - AluSg/x SINE Alu -10 302 157 546 217 106 81 chr13 40141185 40141420 -79603478 + MIR SINE MIR 22 262 0 23 0 0 0 chr13 40141569 40141592 -79603306 + AT_rich Low_complexity Low_complexity 1 23 0 457 305 121 51 chr13 40141846 40141877 -79603021 - L2 LINE L2 -62 3251 3224 1408 160 63 63 chr13 40141877 40142177 -79602721 + AluJo SINE Alu 1 300 -12 457 305 121 51 chr13 40142177 40142535 -79602363 - L2 LINE L2 -89 3224 2835 275 316 148 7 chr13 40142670 40142825 -79602073 + MIR SINE MIR 79 255 -7 1525 199 4 0 chr13 40142946 40143212 -79601686 - AluJo SINE Alu -20 292 26 1239 134 0 0 chr13 40143293 40143472 -79601426 - AluSg/x SINE Alu -8 302 124 2310 83 7 0 chr13 40143473 40143762 -79601136 - AluSx SINE Alu -11 301 11 2209 115 14 0 chr13 40145373 40145669 -79599229 - AluSq SINE Alu -13 300 1 2132 126 0 10 chr13 40146683 40146984 -79597914 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 40146984 40147005 -79597893 + AT_rich Low_complexity Low_complexity 1 21 0 206 241 0 0 chr13 40147021 40147075 -79597823 + T-rich Low_complexity Low_complexity 5 58 0 474 192 10 120 chr13 40147545 40147753 -79597145 - L1MC5 LINE L1 -33 7928 7744 1792 166 14 3 chr13 40148189 40148484 -79596414 + AluJo SINE Alu 5 302 -10 849 160 0 0 chr13 40148525 40148644 -79596254 - FLAM_C SINE Alu -14 119 1 240 330 0 11 chr13 40148845 40148936 -79595962 + L2 LINE L2 2271 2360 -954 1348 128 27 14 chr13 40199618 40199837 -79545061 + AluSq SINE Alu 1 222 -91 1216 222 225 21 chr13 40199841 40200716 -79544182 - SATR1 Satellite Satellite -96 1053 1 964 219 193 27 chr13 40201899 40202308 -79542590 - SATR1 Satellite Satellite -2 476 1 1149 215 263 33 chr13 40202355 40203203 -79541695 - SATR1 Satellite Satellite -51 1042 1 1203 216 238 41 chr13 40203268 40204490 -79540408 - SATR1 Satellite Satellite -95 1463 1 1084 230 252 28 chr13 40204536 40205866 -79539032 - SATR1 Satellite Satellite -51 1627 1 1296 217 278 7 chr13 40205900 40208649 -79536249 - SATR1 Satellite Satellite -1 3494 1 1129 229 240 40 chr13 40208664 40210246 -79534652 - SATR1 Satellite Satellite -2 1898 1 2064 202 108 9 chr13 40210306 40211642 -79533256 - SATR1 Satellite Satellite -1 1468 1 248 216 5 88 chr13 40211729 40211923 -79532975 + (TTA)n Simple_repeat Simple_repeat 1 178 0 2295 180 104 21 chr13 40212020 40213720 -79531178 - SATR1 Satellite Satellite 0 1841 1 808 172 45 45 chr13 40213867 40214065 -79530833 + LTR2 LTR ERV1 235 432 -17 514 83 0 0 chr13 40214090 40214162 -79530736 - tRNA-Glu-GAG tRNA tRNA -2 73 2 3148 105 14 0 chr13 40214163 40214602 -79530296 + HERVE LTR ERV1 647 1091 -6722 381 210 36 51 chr13 40214603 40214741 -79530157 - L1M LINE L1 -774 5390 5255 1220 80 0 0 chr13 40214746 40214897 -79530001 + AluSp SINE Alu 1 151 -162 22 80 0 0 chr13 40215632 40215682 -79529216 + GC_rich Low_complexity Low_complexity 1 50 0 28 48 0 0 chr13 40215879 40215921 -79528977 + GC_rich Low_complexity Low_complexity 1 42 0 189 290 137 0 chr13 40216179 40216303 -79528595 + MIR SINE MIR 46 186 -76 186 133 0 0 chr13 40216706 40216736 -79528162 + MIR SINE MIR 117 146 -62 216 67 0 0 chr13 40217329 40217359 -79527539 + (CAA)n Simple_repeat Simple_repeat 1 30 0 324 48 0 0 chr13 40221628 40221670 -79523228 + (TG)n Simple_repeat Simple_repeat 1 42 0 438 261 118 6 chr13 40223622 40223783 -79521115 - MIR3 SINE MIR 0 208 30 218 206 0 16 chr13 40224225 40224288 -79520610 + (CA)n Simple_repeat Simple_repeat 2 63 0 608 176 6 0 chr13 40224299 40224469 -79520429 + (CA)n Simple_repeat Simple_repeat 1 171 0 2162 119 0 7 chr13 40224564 40224857 -79520041 - AluSx SINE Alu -21 291 1 222 37 0 0 chr13 40226904 40226931 -79517967 + (TC)n Simple_repeat Simple_repeat 1 27 0 2179 90 7 4 chr13 40227145 40227424 -79517474 + AluSx SINE Alu 1 280 -32 303 28 0 0 chr13 40227426 40227462 -79517436 + (TAA)n Simple_repeat Simple_repeat 2 37 0 342 0 0 0 chr13 40227462 40227500 -79517398 + (GAA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr13 40229059 40229080 -79515818 + AT_rich Low_complexity Low_complexity 1 21 0 3572 135 86 26 chr13 40229895 40230513 -79514385 - L1MB7 LINE L1 0 6184 5415 2425 66 7 3 chr13 40230513 40230815 -79514083 - AluY SINE Alu -8 303 1 3572 135 86 26 chr13 40230815 40230960 -79513938 - L1MB7 LINE L1 -769 5415 5280 * 7028 118 29 4 chr13 40230948 40232519 -79512379 - L1MA2 LINE L1 0 7723 6115 32535 106 15 51 chr13 40232523 40238900 -79505998 - L1PA7 LINE L1 -4 6150 12 5373 136 26 1 chr13 40238912 40239824 -79505074 - L1MA2 LINE L1 -1434 6131 5197 3858 70 6 6 chr13 40239824 40240323 -79504575 - L1PA7 LINE L1 0 6154 5656 5265 80 0 0 chr13 40240323 40241012 -79503886 + L1P LINE L1 3753 4441 -1705 * 20893 147 39 30 chr13 40240983 40241740 -79503158 - L1MA2 LINE L1 -2330 5235 4486 2455 76 0 3 chr13 40241740 40242043 -79502855 + AluSq SINE Alu 5 306 -7 20893 147 39 30 chr13 40242043 40242980 -79501918 - L1MA2 LINE L1 -3079 4486 3559 2180 123 0 10 chr13 40242980 40243281 -79501617 - AluSq SINE Alu -15 298 1 20893 147 39 30 chr13 40243281 40245110 -79499788 - L1MA2 LINE L1 -4006 3559 1649 198 0 0 0 chr13 40245110 40245132 -79499766 + (TC)n Simple_repeat Simple_repeat 2 23 0 20893 147 39 30 chr13 40245132 40246786 -79498112 - L1MA2 LINE L1 -5916 1649 11 1871 172 7 3 chr13 40246817 40247119 -79497779 - AluJo SINE Alu -9 303 1 4854 192 42 54 chr13 40247120 40247348 -79497550 - L1M4 LINE L1 -858 5288 5059 2450 64 3 0 chr13 40247348 40247643 -79497255 - AluY SINE Alu -15 296 1 4854 192 42 54 chr13 40247643 40248053 -79496845 - L1M4 LINE L1 -1087 5059 4646 750 163 0 22 chr13 40248053 40248188 -79496710 - FLAM_C SINE Alu -1 132 1 4854 192 42 54 chr13 40248188 40248834 -79496064 - L1M4 LINE L1 -1500 4646 4018 225 0 0 0 chr13 40249179 40249204 -79495694 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 387 0 0 0 chr13 40249203 40249246 -79495652 + (TG)n Simple_repeat Simple_repeat 1 43 0 279 208 13 52 chr13 40249435 40249512 -79495386 - MER103 DNA DNA -8 158 85 1029 262 80 17 chr13 40249538 40249924 -79494974 - MLT1J LTR MaLR -34 477 1 265 186 0 0 chr13 40249924 40249966 -79494932 - MER103 DNA DNA -74 92 51 582 244 45 24 chr13 40250575 40250780 -79494118 + MIR SINE MIR 11 229 -33 188 242 200 11 chr13 40250945 40251040 -79493858 + MIR SINE MIR 19 131 -77 571 269 55 79 chr13 40251457 40251830 -79493068 + L2 LINE L2 2910 3270 -2 276 154 0 0 chr13 40252282 40252334 -79492564 + (TG)n Simple_repeat Simple_repeat 1 52 0 243 208 14 83 chr13 40253076 40253148 -79491750 - MIR3 SINE MIR -41 167 101 261 270 67 22 chr13 40253996 40254085 -79490813 + L3b LINE CR1 1151 1243 -340 1569 171 14 10 chr13 40254106 40254398 -79490500 + AluJo SINE Alu 1 293 -19 338 189 245 0 chr13 40255125 40255231 -79489667 - MIR SINE MIR -70 192 61 241 293 150 14 chr13 40256026 40256166 -79488732 + MIR SINE MIR 54 212 -50 432 0 0 0 chr13 40256286 40256334 -79488564 + (CA)n Simple_repeat Simple_repeat 2 49 0 290 245 71 20 chr13 40256339 40256437 -79488461 - L1ME3 LINE L1 -95 6067 5965 234 308 11 33 chr13 40256720 40256811 -79488087 + L2 LINE L2 3141 3229 -43 695 223 0 0 chr13 40256918 40257048 -79487850 + FLAM_C SINE Alu 2 131 -2 24 0 0 0 chr13 40257207 40257231 -79487667 + AT_rich Low_complexity Low_complexity 1 24 0 2616 197 7 45 chr13 40257886 40257969 -79486929 - L1MB7 LINE L1 -1 6183 6098 1759 146 3 14 chr13 40257969 40258264 -79486634 + AluJb SINE Alu 1 292 -20 2616 197 7 45 chr13 40258264 40258774 -79486124 - L1MB7 LINE L1 -86 6098 5613 188 319 110 11 chr13 40258927 40259018 -79485880 + L2 LINE L2 2950 3049 -223 * 248 283 124 9 chr13 40259007 40259120 -79485778 - L2 LINE L2 -63 3250 3125 744 288 91 30 chr13 40259180 40259548 -79485350 + MLT1J2 LTR MaLR 71 440 -10 1688 160 3 30 chr13 40259719 40260019 -79484879 + AluJb SINE Alu 1 292 -20 833 148 0 0 chr13 40261328 40261456 -79483442 - FRAM SINE Alu -9 167 40 799 252 70 21 chr13 40261459 40261701 -79483197 - MIR SINE MIR -1 261 8 204 158 0 0 chr13 40261858 40261896 -79483002 + GA-rich Low_complexity Low_complexity 3 40 0 2719 107 3 3 chr13 40262143 40262507 -79482391 - THE1B LTR MaLR 0 364 1 3932 98 24 5 chr13 40262771 40263351 -79481547 + L1PB1 LINE L1 5561 6151 0 553 289 90 61 chr13 40263445 40263890 -79481008 + MLT1H LTR MaLR 1 547 -2 366 244 130 0 chr13 40264343 40264458 -79480440 - L1ME4a LINE L1 0 6121 5992 393 305 30 30 chr13 40264487 40264701 -79480197 - L1ME4a LINE L1 -226 5895 5679 1584 183 10 16 chr13 40264701 40265007 -79479891 - AluJb SINE Alu -8 304 1 393 305 30 30 chr13 40265007 40265054 -79479844 - L1ME4a LINE L1 -441 5680 5634 315 0 0 0 chr13 40265063 40265098 -79479800 + (CA)n Simple_repeat Simple_repeat 2 36 0 2355 110 19 45 chr13 40265108 40265482 -79479416 - THE1B LTR MaLR 0 364 1 7157 89 4 1 chr13 40265482 40266400 -79478498 - THE1B-int LTR MaLR 0 1580 660 3092 76 21 7 chr13 40266396 40266818 -79478080 - THE1B-int LTR MaLR -1152 428 1 * 600 116 0 12 chr13 40266818 40266904 -79477994 - THE1B LTR MaLR 0 375 291 274 226 45 11 chr13 40266947 40267035 -79477863 + L1ME LINE L1 5513 5612 -509 450 123 235 0 chr13 40267039 40267120 -79477778 + AluJ/FLAM SINE Alu 2 101 -211 3565 151 50 18 chr13 40268246 40268850 -79476048 - MER21B LTR ERV1 -113 750 128 361 238 42 35 chr13 40268852 40268995 -79475903 + L1MEc LINE L1 356 499 -5897 719 176 58 5 chr13 40268996 40269216 -79475682 + L1M4 LINE L1 4897 5182 -964 2144 147 97 1 chr13 40269294 40269798 -79475100 - L1ME4a LINE L1 -666 5518 4964 417 234 73 8 chr13 40269804 40269928 -79474970 + L1MA10 LINE L1 6201 6332 -2 384 274 112 80 chr13 40269932 40270246 -79474652 - L1ME4a LINE L1 -4 6117 5794 835 186 13 46 chr13 40271074 40271393 -79473505 - MLT1A1 LTR MaLR -2 372 15 488 256 184 23 chr13 40271396 40271662 -79473236 - L2 LINE L2 -23 3249 2941 367 256 77 10 chr13 40272146 40272302 -79472596 - MIR SINE MIR 0 262 40 563 257 29 12 chr13 40272376 40272547 -79472351 - L2 LINE L2 -31 3282 3109 1458 136 55 0 chr13 40273129 40273365 -79471533 - AluSx SINE Alu -8 304 56 790 159 166 18 chr13 40273370 40273533 -79471365 - MER21B LTR ERV1 -113 750 564 572 90 0 0 chr13 40273540 40273618 -79471280 - AluSx SINE Alu -234 79 2 358 250 43 26 chr13 40274322 40274438 -79470460 + MIR SINE MIR 80 197 -65 302 278 19 9 chr13 40274682 40274790 -79470108 - MER103 DNA DNA -12 154 46 1275 171 22 44 chr13 40275010 40275284 -79469614 - L1MD3 LINE L1 0 7995 7728 874 256 107 90 chr13 40276005 40276528 -79468370 + MLT1L LTR MaLR 1 532 -83 1131 189 89 5 chr13 40276667 40277038 -79467860 - MLT1D LTR MaLR 0 505 3 186 133 0 0 chr13 40277231 40277261 -79467637 + (GA)n Simple_repeat Simple_repeat 1 30 0 427 268 36 0 chr13 40279439 40279577 -79465321 - LTR67 LTR ERVL -2 555 413 839 115 94 120 chr13 40280141 40280310 -79464588 - L1MA9 LINE L1 0 6312 6149 342 0 0 0 chr13 40280310 40280348 -79464550 + (TG)n Simple_repeat Simple_repeat 1 38 0 839 115 94 120 chr13 40280348 40280412 -79464486 - L1MA9 LINE L1 -163 6149 6085 2082 112 10 0 chr13 40280625 40280921 -79463977 + AluSx SINE Alu 1 299 -13 213 225 292 13 chr13 40281340 40281474 -79463424 - MIR SINE MIR -48 214 29 253 343 76 35 chr13 40281674 40281846 -79463052 + MIR SINE MIR 4 182 -80 695 99 124 25 chr13 40282725 40282846 -79462052 + THE1C LTR MaLR 194 326 -49 690 229 0 14 chr13 40282875 40283015 -79461883 + FLAM_A SINE Alu 2 139 -3 1053 324 75 15 chr13 40283107 40283626 -79461272 + L2 LINE L2 1745 2294 -1020 749 211 0 0 chr13 40283657 40283790 -79461108 + FLAM_A SINE Alu 1 133 0 315 221 18 62 chr13 40283820 40283933 -79460965 - L1MC4 LINE L1 -17 8025 7918 203 186 51 17 chr13 40283948 40284007 -79460891 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 766 193 54 170 chr13 40284008 40284217 -79460681 - L1MC4 LINE L1 -124 7918 7686 448 143 0 0 chr13 40284217 40284294 -79460604 - L1PB1 LINE L1 -1 6150 6074 766 193 54 170 chr13 40284294 40284520 -79460378 - L1MC4 LINE L1 -356 7686 7450 558 318 13 0 chr13 40284525 40284676 -79460222 - MIR SINE MIR -76 186 34 1346 254 27 70 chr13 40284771 40285331 -79459567 - L1MC4 LINE L1 -469 7573 7038 699 268 26 26 chr13 40285370 40285598 -79459300 + L2 LINE L2 2290 2517 -797 653 239 14 7 chr13 40285672 40285814 -79459084 + MER5B DNA MER1_type 2 144 -34 1376 196 109 16 chr13 40286341 40286718 -79458180 + MER66A LTR ERV1 27 438 -40 580 324 109 37 chr13 40287132 40288309 -79456589 + L1MC4a LINE L1 3683 4957 -1189 1637 179 18 72 chr13 40288309 40288695 -79456203 + MLT1A1 LTR MaLR 1 365 0 580 324 109 37 chr13 40288695 40288779 -79456119 + L1MC4a LINE L1 4957 5034 -1112 1023 264 138 24 chr13 40288999 40289541 -79455357 + L1MC4a LINE L1 5264 5867 -1941 520 302 58 39 chr13 40289777 40289865 -79455033 + L1M4 LINE L1 4741 4826 -1320 2170 144 5 57 chr13 40289865 40290248 -79454650 - MLT1A1 LTR MaLR 0 365 3 520 302 58 39 chr13 40290248 40290523 -79454375 + L1M4 LINE L1 4826 5111 -1035 674 184 40 0 chr13 40290546 40290671 -79454227 + FLAM_A SINE Alu 1 130 -3 889 61 0 0 chr13 40290888 40291002 -79453896 - L1PA5 LINE L1 -2 6152 6039 773 173 0 29 chr13 40291052 40291191 -79453707 - AluJo SINE Alu -175 137 3 265 318 10 42 chr13 40291195 40291387 -79453511 + HAL1 LINE L1 1278 1463 -1044 1952 122 3 0 chr13 40292458 40292745 -79452153 - AluSg SINE Alu -22 288 1 45497 33 4 1 chr13 40292918 40299035 -79445863 - L1PA4 LINE L1 -3 6152 12 1829 252 31 35 chr13 40299458 40299978 -79444920 + MER97c DNA MER1_type? 1 518 -572 270 270 144 47 chr13 40300075 40300290 -79444608 + MER97c DNA MER1_type? 824 1059 -31 249 250 0 0 chr13 40300993 40301045 -79443853 + LTR30 LTR ERV1 1 52 -670 2338 81 169 157 chr13 40301045 40301638 -79443260 + LTR12 LTR ERV1 57 581 -133 846 219 0 0 chr13 40301778 40301942 -79442956 - FAM SINE Alu -16 169 6 1338 257 82 21 chr13 40301952 40302376 -79442522 + MER74B LTR ERVL 91 540 -82 259 250 68 0 chr13 40302307 40302395 -79442503 - MER88 LTR ERVL -291 173 80 * 396 0 0 0 chr13 40302896 40302940 -79441958 + (CA)n Simple_repeat Simple_repeat 2 45 0 795 346 38 3 chr13 40302955 40303302 -79441596 + MER115 DNA AcHobo 3 361 -332 240 35 0 0 chr13 40304986 40305015 -79439883 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr13 40306954 40306976 -79437922 + AT_rich Low_complexity Low_complexity 1 22 0 808 241 72 14 chr13 40307193 40307400 -79437498 + MER20 DNA MER1_type 1 219 0 354 249 137 29 chr13 40308100 40308305 -79436593 + L1MC5 LINE L1 7701 7927 -34 575 254 103 82 chr13 40309060 40309553 -79435345 - MLT1H LTR MaLR -4 545 1 410 243 196 0 chr13 40310975 40311123 -79433775 - MER5B DNA MER1_type -1 177 1 1786 279 71 1 chr13 40311483 40312150 -79432748 + L2 LINE L2 2396 3145 -168 2033 137 0 10 chr13 40312150 40312449 -79432449 - AluJb SINE Alu -6 306 11 1786 279 71 1 chr13 40312449 40312631 -79432267 + L2 LINE L2 3145 3313 0 182 294 119 24 chr13 40313442 40313568 -79431330 - MIR SINE MIR -19 243 106 1157 209 0 5 chr13 40313578 40313793 -79431105 + L1MB7 LINE L1 1 214 -6328 * 5606 174 48 13 chr13 40313790 40314913 -79429985 + L1MB7 LINE L1 4761 5976 -706 2075 137 7 0 chr13 40314913 40315206 -79429692 + AluSx SINE Alu 1 295 -17 5606 174 48 13 chr13 40315206 40315921 -79428977 + L1MB7 LINE L1 5976 6664 -18 21 36 0 0 chr13 40315922 40315950 -79428948 + AT_rich Low_complexity Low_complexity 1 28 0 401 198 10 0 chr13 40316481 40316582 -79428316 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 1775 208 14 14 chr13 40317953 40318318 -79426580 - MLT1A1 LTR MaLR 0 365 1 430 223 37 15 chr13 40318408 40318562 -79426336 - MLT1I LTR MaLR -206 203 46 416 242 33 0 chr13 40318821 40318941 -79425957 + MIR SINE MIR 136 259 -3 24 53 0 0 chr13 40318943 40318981 -79425917 + AT_rich Low_complexity Low_complexity 1 38 0 907 160 0 13 chr13 40319125 40319275 -79425623 - AluJo SINE Alu -161 151 4 354 23 0 0 chr13 40321956 40321999 -79422899 + (CA)n Simple_repeat Simple_repeat 2 44 0 205 214 125 0 chr13 40322467 40322523 -79422375 - MIR SINE MIR -85 123 61 1938 166 0 22 chr13 40322661 40322980 -79421918 + AluJb SINE Alu 1 312 0 359 244 17 26 chr13 40324538 40324653 -79420245 + MIR SINE MIR 46 159 -103 478 278 29 17 chr13 40324685 40324858 -79420040 + MIR SINE MIR 88 262 0 200 216 0 0 chr13 40326928 40326965 -79417933 + CT-rich Low_complexity Low_complexity 3 39 0 263 323 16 8 chr13 40328115 40328239 -79416659 + (TA)n Simple_repeat Simple_repeat 1 125 0 34 24 0 0 chr13 40328402 40328443 -79416455 + AT_rich Low_complexity Low_complexity 1 41 0 186 232 0 54 chr13 40328468 40328524 -79416374 + L2 LINE L2 3180 3232 -81 231 143 0 0 chr13 40329399 40329434 -79415464 + L1P LINE L1 4204 4238 -1908 615 9 0 73 chr13 40329434 40329544 -79415354 + (TCTCCC)n Simple_repeat Simple_repeat 4 105 0 6922 76 13 8 chr13 40329564 40330981 -79413917 + SVA Other Other 78 1386 0 2081 138 0 3 chr13 40330994 40331298 -79413600 + AluSg SINE Alu 1 303 -7 1784 144 27 33 chr13 40331300 40331599 -79413299 + AluSx SINE Alu 1 297 -15 287 100 0 0 chr13 40331599 40331639 -79413259 + L1MA2 LINE L1 6069 6108 -196 529 174 15 0 chr13 40331653 40331785 -79413113 + (TA)n Simple_repeat Simple_repeat 2 135 0 1705 138 0 21 chr13 40331799 40332088 -79412810 - AluSx SINE Alu -29 283 1 1138 143 10 0 chr13 40332088 40332284 -79412614 + L1MA2 LINE L1 6107 6304 0 2841 188 7 0 chr13 40332370 40332938 -79411960 + L1 LINE L1 4270 4841 -1305 4459 76 20 19 chr13 40332938 40333585 -79411313 + L1PB2 LINE L1 5504 6151 0 2246 263 57 13 chr13 40334796 40335394 -79409504 - MER115 DNA AcHobo -10 683 60 193 219 16 16 chr13 40336292 40336356 -79408542 + CT-rich Low_complexity Low_complexity 4 67 0 261 239 119 28 chr13 40337611 40337720 -79407178 + MIR3 SINE MIR 51 169 -39 181 313 240 0 chr13 40337905 40338001 -79406897 - MIR SINE MIR -62 146 28 1903 160 3 26 chr13 40338009 40338321 -79406577 - AluJo SINE Alu -7 305 1 439 298 101 6 chr13 40338881 40339039 -79405859 + MIR3 SINE MIR 23 195 -13 2364 28 7 11 chr13 40339145 40339468 -79405430 - AluY SINE Alu 0 322 1 450 234 0 2 chr13 40341165 40341255 -79403643 - MER2 DNA MER2_type -150 89 1 940 230 72 122 chr13 40341448 40341528 -79403370 + L1MC4 LINE L1 7355 7437 -605 2440 90 0 3 chr13 40341528 40341839 -79403059 + AluSg SINE Alu 1 310 0 940 230 72 122 chr13 40341839 40342359 -79402539 + L1MC4 LINE L1 7437 8042 0 273 306 68 14 chr13 40342419 40342566 -79402332 + MIR3 SINE MIR 42 196 -12 2547 78 0 0 chr13 40343750 40344058 -79400840 + AluSg SINE Alu 1 308 -2 1674 199 6 3 chr13 40346605 40346916 -79397982 + AluJo SINE Alu 1 312 0 21 0 0 0 chr13 40346949 40346970 -79397928 + AT_rich Low_complexity Low_complexity 1 21 0 1088 260 122 26 chr13 40347620 40347661 -79397237 + LTR33 LTR ERVL 55 91 -430 1957 211 127 10 chr13 40347661 40348238 -79396660 + LTR48B LTR ERV1 1 644 0 1088 260 122 26 chr13 40348238 40348615 -79396283 + LTR33 LTR ERVL 91 513 -8 192 152 0 0 chr13 40348647 40348680 -79396218 + T-rich Low_complexity Low_complexity 1 33 0 7963 12 0 1 chr13 40349689 40350665 -79394233 + L1PA3 LINE L1 5199 6173 0 459 212 62 27 chr13 40350749 40350895 -79394003 - L1MEc LINE L1 -5341 1055 905 356 308 14 5 chr13 40350935 40351070 -79393828 + MIR SINE MIR 52 187 -62 1696 144 17 50 chr13 40352285 40352584 -79392314 - AluJo SINE Alu -11 301 13 396 330 189 3 chr13 40352927 40353245 -79391653 + HsTC2 DNA Tc2 242 618 -1280 1935 217 93 28 chr13 40353579 40354231 -79390667 - L1ME3A LINE L1 -23 6141 5420 405 0 0 0 chr13 40354955 40355000 -79389898 + (CA)n Simple_repeat Simple_repeat 2 46 0 976 246 68 73 chr13 40355858 40356268 -79388630 + L2 LINE L2 2302 2709 -605 450 288 61 69 chr13 40356598 40357119 -79387779 - HAL1b LINE L1 -597 751 235 272 288 0 0 chr13 40357193 40357259 -79387639 - L2 LINE L2 0 3313 3248 317 279 115 8 chr13 40358120 40358242 -79386656 + MLT1L LTR MaLR 132 266 -349 534 251 65 17 chr13 40358348 40358605 -79386293 + MLT1L LTR MaLR 260 612 -3 5662 199 15 4 chr13 40359048 40360316 -79384582 + L1P LINE L1 3220 4501 -1645 3318 27 2 0 chr13 40360341 40360903 -79383995 + L1P2 LINE L1 5107 5669 -486 286 153 0 17 chr13 40361003 40361062 -79383836 + MER51B-int LTR ERV1 3146 3203 -4613 * 949 94 19 0 chr13 40361057 40361216 -79383682 + MER51B-int LTR ERV1 6085 6246 -1570 1502 145 0 4 chr13 40361219 40361460 -79383438 + MER51B-int LTR ERV1 7576 7815 -1 1497 100 124 0 chr13 40361462 40361712 -79383186 + MER51B LTR ERV1 1 281 -96 1225 119 2 20 chr13 40361742 40361969 -79382929 + L1PA15 LINE L1 5476 5701 -462 1819 151 16 70 chr13 40362019 40362308 -79382590 + L1PA15 LINE L1 5685 5951 -214 2394 97 0 0 chr13 40362308 40362616 -79382282 + AluSc SINE Alu 1 308 -1 1819 151 16 70 chr13 40362616 40362697 -79382201 + L1PA15 LINE L1 5951 6035 -130 444 143 20 20 chr13 40362702 40362779 -79382119 + L1 LINE L1 4376 4455 -1691 692 151 0 8 chr13 40362779 40362902 -79381996 + L1PA15 LINE L1 6041 6165 0 444 143 20 20 chr13 40362902 40362922 -79381976 + L1 LINE L1 4454 4473 -1673 940 174 24 42 chr13 40363718 40363930 -79380968 + MER3 DNA MER1_type 2 209 0 242 111 0 0 chr13 40364082 40364118 -79380780 + Alu SINE Alu 3 38 -264 2331 105 0 0 chr13 40364217 40364512 -79380386 - AluSx SINE Alu -12 300 6 6821 58 7 0 chr13 40364589 40366099 -79378799 - L1PA6 LINE L1 -2 6152 4625 8610 60 1 0 chr13 40366199 40367371 -79377527 - L1PA6 LINE L1 -1996 4150 2978 314 331 29 11 chr13 40367377 40367552 -79377346 - MARNA DNA Mariner -119 467 290 426 287 15 29 chr13 40367563 40367699 -79377199 + MIR3 SINE MIR 74 207 -1 345 250 92 43 chr13 40367700 40367775 -79377123 - MARNA DNA Mariner -286 300 230 2135 170 6 6 chr13 40367775 40368139 -79376759 + MER47A DNA MER2_type 3 366 0 345 250 92 43 chr13 40368139 40368227 -79376671 - MARNA DNA Mariner -356 230 129 24 0 0 0 chr13 40368277 40368301 -79376597 + AT_rich Low_complexity Low_complexity 1 24 0 259 313 155 51 chr13 40369641 40370015 -79374883 + L2 LINE L2 2247 2659 -655 281 339 67 67 chr13 40370100 40370416 -79374482 + L2 LINE L2 2932 3247 -25 230 305 39 94 chr13 40371411 40371539 -79373359 + MIR SINE MIR 67 187 -75 259 336 82 0 chr13 40371549 40371671 -79373227 + MIR SINE MIR 123 254 -8 317 238 0 0 chr13 40371860 40371923 -79372975 + MIR SINE MIR 200 262 0 303 284 140 36 chr13 40371936 40372158 -79372740 - L3b LINE CR1 -118 1465 1221 402 349 32 16 chr13 40372531 40372720 -79372178 + L2 LINE L2 2866 3057 -215 732 224 120 26 chr13 40374279 40374471 -79370427 + MER63A DNA MER1_type 1 210 0 549 332 71 42 chr13 40374758 40375138 -79369760 + L2 LINE L2 2880 3270 -2 448 178 92 72 chr13 40375812 40375964 -79368934 + MER112 DNA MER1_type 6 160 -100 300 276 51 41 chr13 40375966 40376064 -79368834 + L2 LINE L2 3167 3265 -7 249 303 72 59 chr13 40376971 40377123 -79367775 - MIR SINE MIR -60 202 49 280 299 0 35 chr13 40377373 40377460 -79367438 - Charlie8 DNA MER1_type -2332 85 2 818 226 127 0 chr13 40377601 40377782 -79367116 + MIR SINE MIR 37 240 -22 398 222 129 46 chr13 40379410 40379604 -79365294 - MIR SINE MIR -7 255 46 489 285 48 5 chr13 40380910 40381096 -79363802 - L2 LINE L2 -2 3311 3118 386 241 136 27 chr13 40381181 40381438 -79363460 + L1MC5 LINE L1 7631 7915 -46 213 349 40 20 chr13 40382153 40382305 -79362593 - MIR SINE MIR -49 213 59 461 318 19 26 chr13 40383440 40383594 -79361304 + MIR3 SINE MIR 16 168 -40 305 318 55 18 chr13 40383813 40383923 -79360975 + MIR SINE MIR 36 149 -59 522 211 53 119 chr13 40383933 40384270 -79360628 + HAL1 LINE L1 2081 2395 -112 555 253 60 134 chr13 40384393 40384729 -79360169 - L2 LINE L2 -19 3253 2943 7608 25 7 0 chr13 40385002 40386433 -79358465 + L1PA4 LINE L1 4700 6154 -1 25 0 0 0 chr13 40386433 40386458 -79358440 + AT_rich Low_complexity Low_complexity 1 25 0 314 339 63 25 chr13 40386765 40386927 -79357971 + MIR SINE MIR 26 192 -65 337 292 18 35 chr13 40386929 40387042 -79357856 + MIR3 SINE MIR 73 183 -25 796 300 171 32 chr13 40387281 40388007 -79356891 - L2 LINE L2 -1191 2123 1297 1346 111 0 53 chr13 40388570 40388796 -79356102 + L1PA15 LINE L1 5939 6152 -13 354 231 157 0 chr13 40390828 40390936 -79353962 - MER94 DNA DNA -9 125 1 2310 104 0 3 chr13 40391135 40391444 -79353454 + AluSg SINE Alu 1 308 -2 2114 123 3 0 chr13 40391504 40391796 -79353102 + AluSq SINE Alu 1 293 -20 317 300 0 0 chr13 40392253 40392333 -79352565 + L2 LINE L2 3234 3313 0 3507 137 28 28 chr13 40393237 40393841 -79351057 + MER6A DNA MER2_type 2 605 0 687 270 180 5 chr13 40393873 40394084 -79350814 + MIR SINE MIR 15 262 0 2355 93 3 0 chr13 40394823 40395123 -79349775 - AluSp SINE Alu -12 301 1 447 335 71 11 chr13 40395253 40395435 -79349463 - MIR SINE MIR -47 215 23 395 346 32 0 chr13 40395765 40395921 -79348977 + MIR SINE MIR 68 228 -34 393 314 10 0 chr13 40396381 40396483 -79348415 - L2 LINE L2 -1 3271 3169 2221 124 3 0 chr13 40396565 40396863 -79348035 + AluSx SINE Alu 1 299 -13 1956 111 7 4 chr13 40397759 40398065 -79346833 + AluSx SINE Alu 1 307 0 514 254 92 40 chr13 40399071 40399244 -79345654 - MIR SINE MIR -50 212 31 223 339 54 18 chr13 40399477 40399589 -79345309 - L2 LINE L2 0 3313 3198 611 184 0 14 chr13 40399903 40400050 -79344848 + L1P LINE L1 4753 4897 -1249 687 187 0 0 chr13 40400051 40400185 -79344713 - L1 LINE L1 -1455 4691 4558 1422 163 33 33 chr13 40400318 40400619 -79344279 - MER58B DNA MER1_type 0 341 41 678 261 85 15 chr13 40400779 40401051 -79343847 + MER102b DNA MER1_type 35 325 -16 424 291 166 10 chr13 40401155 40401354 -79343544 + MIR SINE MIR 19 248 -14 408 304 75 50 chr13 40401432 40401593 -79343305 - MIR3 SINE MIR -28 180 16 3722 203 5 5 chr13 40402077 40402910 -79341988 + L1P LINE L1 4304 5136 -1010 1429 189 71 0 chr13 40402908 40403246 -79341652 + L1MC4 LINE L1 7062 7423 -619 * 1473 166 14 38 chr13 40403247 40403536 -79341362 - MER1B DNA MER1_type -1 338 57 1845 186 72 23 chr13 40403547 40403948 -79340950 + L1MC4 LINE L1 7415 7844 -198 2190 114 7 0 chr13 40403948 40404246 -79340652 - AluSx SINE Alu -12 300 1 1845 186 72 23 chr13 40404246 40404318 -79340580 + L1MC4 LINE L1 7844 7911 -131 306 50 0 0 chr13 40404339 40404379 -79340519 + (GA)n Simple_repeat Simple_repeat 2 41 0 216 0 0 0 chr13 40405704 40405728 -79339170 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1065 230 45 63 chr13 40405752 40406230 -79338668 + MLT1K LTR MaLR 63 558 -30 2743 23 0 0 chr13 40406337 40406646 -79338252 - AluYb8 SINE Alu -9 309 1 429 252 23 0 chr13 40406842 40406973 -79337925 + MER103 DNA DNA 13 146 -20 548 258 8 0 chr13 40407035 40407163 -79337735 + FLAM_A SINE Alu 1 129 -13 500 234 30 96 chr13 40408144 40408341 -79336557 + MIR SINE MIR 79 262 0 2082 146 0 0 chr13 40408971 40409273 -79335625 - AluSx SINE Alu -10 302 1 2203 94 35 0 chr13 40409733 40410021 -79334877 - AluSc SINE Alu -11 298 1 521 203 161 8 chr13 40410275 40410393 -79334505 + MIR SINE MIR 4 139 -123 3164 236 36 29 chr13 40410713 40411543 -79333355 - L1M4 LINE L1 -1198 4948 4108 581 23 23 35 chr13 40411543 40411630 -79333268 - L1PA4 LINE L1 0 6155 6070 3164 236 36 29 chr13 40411630 40411786 -79333112 - L1M4 LINE L1 -2038 4108 3955 306 342 33 0 chr13 40411906 40412026 -79332872 - L1ME LINE L1 -5941 129 6 920 243 71 41 chr13 40412239 40412606 -79332292 - HAL1 LINE L1 0 2507 2130 254 139 0 23 chr13 40412606 40412649 -79332249 + Tigger5 DNA MER2_type 4 45 -2278 254 128 0 43 chr13 40412686 40412733 -79332165 - Tigger5 DNA MER2_type -2278 45 1 293 68 0 23 chr13 40412834 40412878 -79332020 + Tigger5 DNA MER2_type 2123 2165 -158 1049 190 119 36 chr13 40412903 40413240 -79331658 - HAL1 LINE L1 -754 1753 1389 369 0 0 0 chr13 40413241 40413282 -79331616 + (TG)n Simple_repeat Simple_repeat 2 42 0 368 342 31 12 chr13 40413426 40413587 -79331311 - HAL1 LINE L1 -2065 442 279 431 252 214 15 chr13 40414098 40414304 -79330594 - MIR SINE MIR -14 248 2 239 129 29 43 chr13 40414385 40414455 -79330443 + (TAAG)n Simple_repeat Simple_repeat 1 69 0 299 346 0 0 chr13 40415341 40415422 -79329476 - MER63 DNA MER1_type -1 1060 980 283 135 77 0 chr13 40415425 40415477 -79329421 - MER63 DNA MER1_type -312 748 693 907 141 14 0 chr13 40417844 40417986 -79326912 - AluSg/x SINE Alu -33 279 136 190 316 53 40 chr13 40418280 40418356 -79326542 - L2 LINE L2 -12 3260 3184 23 0 0 0 chr13 40418772 40418795 -79326103 + AT_rich Low_complexity Low_complexity 1 23 0 10433 32 0 1 chr13 40420265 40421531 -79323367 - L1P LINE L1 -1997 4149 2885 8431 30 0 3 chr13 40421531 40423306 -79321592 + L1PA3 LINE L1 4382 6153 -2 2319 171 11 11 chr13 40423318 40423775 -79321123 + L1P LINE L1 4481 4937 -1209 1444 157 45 114 chr13 40424044 40424446 -79320452 + MLT1A2 LTR MaLR 1 374 0 180 111 0 0 chr13 40424821 40424848 -79320050 + (TATG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 40425532 40425555 -79319343 + AT_rich Low_complexity Low_complexity 1 23 0 1385 138 47 7 chr13 40426029 40426304 -79318594 + MER33 DNA MER1_type 37 322 -2 419 252 70 14 chr13 40428156 40428299 -79316599 + MIR SINE MIR 2 152 -110 238 230 8 143 chr13 40428299 40428425 -79316473 + MIR SINE MIR 127 235 -27 572 143 19 38 chr13 40428496 40428601 -79316297 + Ricksha DNA DNA 1 103 -3143 2131 159 28 3 chr13 40428613 40428965 -79315933 + Ricksha DNA DNA 240 600 -2646 1765 140 23 44 chr13 40428957 40429150 -79315748 + Ricksha DNA DNA 2882 3021 -239 * 2243 107 0 0 chr13 40429150 40429458 -79315440 - AluSq SINE Alu -5 308 1 1765 140 23 44 chr13 40429458 40429681 -79315217 + Ricksha DNA DNA 3021 3247 -13 268 136 23 0 chr13 40429766 40429810 -79315088 + Ricksha DNA DNA 2563 2607 -247 381 303 92 50 chr13 40429899 40430117 -79314781 - MIR SINE MIR -32 230 4 309 51 0 0 chr13 40430297 40430336 -79314562 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 288 374 96 0 chr13 40430504 40430619 -79314279 - L2 LINE L2 -4 3268 3143 1668 243 131 20 chr13 40432293 40432956 -79311942 - HAL1 LINE L1 -4 2503 1767 231 298 0 0 chr13 40432956 40433013 -79311885 - MIR SINE MIR -11 251 195 265 273 129 7 chr13 40433049 40433203 -79311695 + L1P5 LINE L1 5290 5467 -684 688 268 118 21 chr13 40433253 40433448 -79311450 + L1ME3A LINE L1 5626 5859 -311 1986 195 10 45 chr13 40433448 40433931 -79310967 + MER31B LTR ERV1 1 466 0 688 268 118 21 chr13 40433931 40434022 -79310876 + L1ME3A LINE L1 5859 5940 -230 257 316 68 34 chr13 40434301 40434418 -79310480 - L2 LINE L2 -190 3082 2962 1619 179 10 67 chr13 40434571 40434973 -79309925 + L1ME1 LINE L1 4679 5057 -1089 243 243 57 0 chr13 40434985 40435055 -79309843 + L1ME1 LINE L1 5210 5283 -863 1378 172 9 4 chr13 40435056 40435288 -79309610 + AluJb SINE Alu 67 299 -13 3180 223 77 26 chr13 40435289 40436119 -79308779 + L1ME1 LINE L1 5275 6146 -20 309 294 46 46 chr13 40436143 40436296 -79308602 - L2 LINE L2 -605 2709 2557 226 384 34 20 chr13 40436842 40436988 -79307910 + MIR3 SINE MIR 2 149 -59 1190 167 0 0 chr13 40437809 40437989 -79306909 + AluJb SINE Alu 1 180 -132 460 328 69 10 chr13 40438340 40438715 -79306183 - L1 LINE L1 -1058 5088 4674 1037 195 0 19 chr13 40438733 40438948 -79305950 - L1ME LINE L1 -642 5524 5314 656 238 72 6 chr13 40438952 40439133 -79305765 - L1MC4 LINE L1 -1374 6668 6476 926 191 10 10 chr13 40439455 40439664 -79305234 - L1ME LINE L1 -816 5330 5122 367 276 16 42 chr13 40439672 40439828 -79305070 - L1ME LINE L1 -2008 4138 3987 285 310 185 33 chr13 40439958 40440142 -79304756 + MIR SINE MIR 14 225 -37 284 347 0 0 chr13 40440203 40440275 -79304623 - L2 LINE L2 -2 3311 3240 1852 113 14 0 chr13 40441153 40441428 -79303470 + L1PA15 LINE L1 5884 6162 -3 240 294 39 0 chr13 40443920 40444022 -79300876 + L1ME LINE L1 5757 5862 -259 25 31 0 0 chr13 40446988 40447020 -79297878 + AT_rich Low_complexity Low_complexity 1 32 0 1893 143 7 0 chr13 40449169 40449442 -79295456 - MER1B DNA MER1_type -64 275 1 822 275 226 25 chr13 40449500 40449907 -79294991 + L2 LINE L2 2823 3311 -2 317 316 30 77 chr13 40450195 40450429 -79294469 + L2 LINE L2 2980 3202 -111 387 183 0 0 chr13 40450429 40450489 -79294409 + MER20 DNA MER1_type 160 219 0 511 300 116 38 chr13 40451132 40451452 -79293446 - L3b LINE CR1 -116 1467 1123 490 224 146 18 chr13 40451501 40451666 -79293232 - MER5A DNA MER1_type 0 189 4 209 236 28 28 chr13 40451878 40451984 -79292914 + (TA)n Simple_repeat Simple_repeat 1 106 0 264 252 45 81 chr13 40453959 40454070 -79290828 + LTR33A LTR ERVL 56 162 -361 1167 188 14 14 chr13 40454162 40454380 -79290518 + MER58A DNA MER1_type 2 219 -5 231 146 0 24 chr13 40454524 40454565 -79290333 + LTR33A LTR ERVL 458 497 -26 1991 96 68 4 chr13 40455415 40455695 -79289203 - AluSp SINE Alu -13 300 3 253 252 108 0 chr13 40455868 40455979 -79288919 - L1ME3A LINE L1 -87 6083 5961 1852 147 7 24 chr13 40456101 40456394 -79288504 - AluJo SINE Alu -12 300 13 21 36 0 0 chr13 40456577 40456605 -79288293 + AT_rich Low_complexity Low_complexity 1 28 0 270 327 48 58 chr13 40457202 40457306 -79287592 + MIR SINE MIR 28 130 -78 267 298 107 0 chr13 40457322 40457406 -79287492 + MIR3 SINE MIR 105 197 -11 232 347 92 25 chr13 40459318 40459514 -79285384 + L2 LINE L2 2851 3059 -213 2376 74 0 10 chr13 40459713 40460011 -79284887 + AluSp SINE Alu 1 295 -18 375 393 11 6 chr13 40460959 40461137 -79283761 + L2 LINE L2 2565 2743 -571 1144 149 6 0 chr13 40461409 40461583 -79283315 - FAM SINE Alu 0 175 1 192 385 46 9 chr13 40461608 40461717 -79283181 + L2 LINE L2 3142 3254 -18 282 323 72 36 chr13 40462879 40463046 -79281852 - L3 LINE CR1 -6 1571 1399 2536 60 0 0 chr13 40463230 40463529 -79281369 + AluY SINE Alu 1 299 -12 2410 125 8 5 chr13 40463636 40464035 -79280863 + L1MA4A LINE L1 5900 6299 -4 237 341 89 16 chr13 40464281 40464404 -79280494 + MIR3 SINE MIR 10 141 -67 266 272 123 0 chr13 40464482 40464563 -79280335 + MIR SINE MIR 172 262 0 22 0 0 0 chr13 40465041 40465063 -79279835 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 40465498 40465520 -79279378 + AT_rich Low_complexity Low_complexity 1 22 0 617 275 60 0 chr13 40466667 40466849 -79278049 + MIR SINE MIR 60 252 -10 254 256 23 12 chr13 40466851 40466937 -79277961 + (TTA)n Simple_repeat Simple_repeat 3 89 0 47 24 4 0 chr13 40468878 40468976 -79275922 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr13 40469724 40469754 -79275144 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr13 40470375 40470418 -79274480 + AT_rich Low_complexity Low_complexity 1 43 0 1551 157 16 36 chr13 40472044 40472349 -79272549 - L1MA7 LINE L1 -3 6288 5990 679 265 107 55 chr13 40474332 40474656 -79270242 - L2 LINE L2 -253 3060 2723 1281 209 90 47 chr13 40474704 40475106 -79269792 + LTR40b LTR ERVL 44 462 0 3899 248 81 120 chr13 40475108 40477289 -79267609 - L2 LINE L2 -656 2658 563 196 347 32 11 chr13 40477295 40477390 -79267508 - L2 LINE L2 -3059 255 159 611 237 102 57 chr13 40477682 40477997 -79266901 - L1MC4 LINE L1 -1984 5824 5613 331 320 44 61 chr13 40478240 40478350 -79266548 + MIR SINE MIR 3 110 -152 2208 127 0 0 chr13 40478350 40478657 -79266241 + AluSx SINE Alu 1 307 -5 331 320 44 61 chr13 40478657 40478727 -79266171 + MIR SINE MIR 110 180 -82 198 222 0 0 chr13 40478776 40478830 -79266068 + (TTA)n Simple_repeat Simple_repeat 1 54 0 405 0 0 0 chr13 40481436 40481481 -79263417 + (CA)n Simple_repeat Simple_repeat 2 46 0 1012 47 0 8 chr13 40482532 40482661 -79262237 + L1PA3 LINE L1 6026 6153 -2 198 91 0 0 chr13 40482667 40482700 -79262198 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2101 127 33 33 chr13 40483263 40483626 -79261272 + THE1B LTR MaLR 1 363 -1 204 125 62 0 chr13 40484123 40484171 -79260727 + (TA)n Simple_repeat Simple_repeat 1 51 0 510 302 29 71 chr13 40485202 40485510 -79259388 + L2 LINE L2 2977 3271 -1 2139 113 0 0 chr13 40485695 40485987 -79258911 + AluSg SINE Alu 1 292 -18 1819 135 71 17 chr13 40488471 40488767 -79256131 - AluSx SINE Alu 0 312 1 746 190 47 65 chr13 40489210 40489442 -79255456 + L1MA7 LINE L1 6021 6248 -43 310 336 82 9 chr13 40490690 40490800 -79254098 - L2 LINE L2 -2 3311 3194 2464 81 0 3 chr13 40491480 40491790 -79253108 - AluY SINE Alu 0 311 3 577 264 56 76 chr13 40492603 40492906 -79251992 + L2 LINE L2 3017 3313 0 185 184 0 0 chr13 40493065 40493103 -79251795 + L2 LINE L2 3015 3052 -261 188 366 0 0 chr13 40493240 40493311 -79251587 + L2 LINE L2 3201 3271 -1 380 402 94 18 chr13 40493921 40494145 -79250753 - L2 LINE L2 0 3272 3032 946 228 123 19 chr13 40494146 40494505 -79250393 - Charlie7 DNA MER1_type -123 2489 2094 231 326 174 0 chr13 40494809 40494947 -79249951 - L2 LINE L2 -559 2755 2594 550 184 48 68 chr13 40495368 40495515 -79249383 + L2 LINE L2 3159 3302 -11 1382 230 53 65 chr13 40495519 40495953 -79248945 + LTR16A1 LTR ERVL 29 457 0 239 0 0 31 chr13 40496219 40496251 -79248647 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2121 87 7 14 chr13 40496456 40496776 -79248122 - AluY SINE Alu 0 318 1 2155 68 0 0 chr13 40496778 40497057 -79247841 - L1PA6 LINE L1 -1 6153 5875 2958 53 0 0 chr13 40497058 40497480 -79247418 + L1P2 LINE L1 5205 5626 -528 218 302 151 9 chr13 40498180 40498286 -79246612 + L3 LINE CR1 586 706 -871 13601 38 1 1 chr13 40498619 40500275 -79244623 - L1PA4 LINE L1 -1377 4769 3114 7119 36 7 22 chr13 40500275 40501674 -79243224 + L1PA4 LINE L1 4770 6155 0 2241 164 6 81 chr13 40501674 40501790 -79243108 + Tigger1 DNA MER2_type 1471 1594 -824 2251 108 0 0 chr13 40501790 40502125 -79242773 + AluSc SINE Alu 1 309 0 213 39 0 0 chr13 40502125 40502151 -79242747 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2241 164 6 81 chr13 40502151 40502527 -79242371 + Tigger1 DNA MER2_type 1592 1927 -491 811 261 115 0 chr13 40502546 40502772 -79242126 + MIR SINE MIR 1 252 -10 22 35 0 0 chr13 40502772 40502801 -79242097 + AT_rich Low_complexity Low_complexity 1 29 0 180 301 133 0 chr13 40502802 40502885 -79242013 + L3b LINE CR1 1116 1209 -374 19961 65 1 1 chr13 40503764 40507190 -79237708 + L1PA6 LINE L1 2722 6152 -2 1661 85 0 0 chr13 40507267 40507468 -79237430 + AluSq SINE Alu 6 206 -107 5795 96 5 17 chr13 40508730 40508751 -79236147 - L1MA3 LINE L1 0 6305 6285 1991 112 115 15 chr13 40508751 40509081 -79235817 + THE1B LTR MaLR 2 364 0 5795 96 5 17 chr13 40509081 40509922 -79234976 - L1MA3 LINE L1 -20 6285 5454 22 70 0 0 chr13 40510076 40510119 -79234779 + AT_rich Low_complexity Low_complexity 1 43 0 189 329 13 13 chr13 40510367 40510443 -79234455 - MIR3 SINE MIR -22 186 111 686 266 102 9 chr13 40510452 40510794 -79234104 + L1M4 LINE L1 3001 3374 -2772 26 0 0 0 chr13 40511175 40511201 -79233697 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr13 40511366 40511392 -79233506 + AT_rich Low_complexity Low_complexity 1 26 0 1501 156 4 0 chr13 40512055 40512299 -79232599 - L1PA16 LINE L1 -12 6154 5910 236 180 117 54 chr13 40512881 40512992 -79231906 - L1M4 LINE L1 -1703 4443 4326 307 200 9 118 chr13 40513003 40513113 -79231785 - L1MC4 LINE L1 -1331 6711 6614 1863 235 95 11 chr13 40513130 40513738 -79231160 - L1M4 LINE L1 -1807 4339 3681 929 261 100 22 chr13 40513729 40514178 -79230720 - L1MEc LINE L1 -4688 2434 1951 * 504 264 133 22 chr13 40514185 40514500 -79230398 - L1MEc LINE L1 -4890 1731 1306 1211 128 79 57 chr13 40516630 40516857 -79228041 + MER46A DNA MER2_type 3 234 -2 536 319 27 11 chr13 40516862 40517047 -79227851 - MIR SINE MIR -32 230 43 493 248 55 9 chr13 40517375 40517484 -79227414 + L2 LINE L2 3158 3271 -1 1528 181 38 0 chr13 40517596 40517716 -79227182 + AluJo SINE Alu 1 115 -197 230 0 33 0 chr13 40517716 40517746 -79227152 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1528 181 38 0 chr13 40517746 40517891 -79227007 + AluJo SINE Alu 115 276 -36 447 68 0 0 chr13 40517902 40517961 -79226937 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 21 0 0 0 chr13 40518216 40518237 -79226661 + AT_rich Low_complexity Low_complexity 1 21 0 334 250 0 22 chr13 40518880 40518972 -79225926 + CT-rich Low_complexity Low_complexity 3 92 0 617 330 121 42 chr13 40518977 40519850 -79225048 - L2 LINE L2 -8 3264 2325 22 35 0 0 chr13 40520184 40520213 -79224685 + AT_rich Low_complexity Low_complexity 1 29 0 207 301 0 27 chr13 40520925 40520998 -79223900 + GA-rich Low_complexity Low_complexity 2 72 0 223 317 40 40 chr13 40521982 40522083 -79222815 + MIR3 SINE MIR 105 205 -3 284 119 34 0 chr13 40522118 40522177 -79222721 + L1ME4a LINE L1 6061 6121 0 23 0 0 0 chr13 40522675 40522698 -79222200 + AT_rich Low_complexity Low_complexity 1 23 0 321 267 103 67 chr13 40523423 40523514 -79221384 + L1MC5 LINE L1 7505 7591 -370 1572 199 3 13 chr13 40523514 40523815 -79221083 - AluJb SINE Alu -12 300 3 321 267 103 67 chr13 40523815 40524082 -79220816 + L1MC5 LINE L1 7591 7876 -85 221 236 127 0 chr13 40524154 40524209 -79220689 + MIR SINE MIR 200 261 -1 445 318 115 5 chr13 40524265 40524457 -79220441 + MIR SINE MIR 20 232 -30 2328 57 23 3 chr13 40524776 40525077 -79219821 + AluY SINE Alu 1 307 -4 24 32 0 0 chr13 40525368 40525399 -79219499 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr13 40525512 40525533 -79219365 + (A)n Simple_repeat Simple_repeat 1 21 0 2180 116 0 0 chr13 40525740 40526033 -79218865 - AluSx SINE Alu -19 293 1 1894 171 0 10 chr13 40526181 40526491 -79218407 - AluJb SINE Alu -4 308 2 2349 79 3 0 chr13 40526497 40526800 -79218098 - AluSp SINE Alu -9 304 1 23 33 0 0 chr13 40527318 40527348 -79217550 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 40528434 40528462 -79216436 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr13 40528734 40528757 -79216141 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2032 127 0 10 chr13 40528761 40529053 -79215845 - AluSx SINE Alu -23 289 1 209 267 0 0 chr13 40529089 40529134 -79215764 - L2 LINE L2 -4 3309 3265 271 310 35 49 chr13 40529301 40529443 -79215455 - MIR3 SINE MIR 0 208 69 523 317 25 10 chr13 40531247 40531449 -79213449 - MIR SINE MIR -40 222 18 22 56 0 0 chr13 40531525 40531561 -79213337 + AT_rich Low_complexity Low_complexity 1 36 0 424 332 121 33 chr13 40531718 40532424 -79212474 - L2 LINE L2 -10 3262 2482 21 0 0 0 chr13 40532966 40532987 -79211911 + AT_rich Low_complexity Low_complexity 1 21 0 2278 74 0 13 chr13 40533443 40533755 -79211143 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 40533765 40533786 -79211112 + AT_rich Low_complexity Low_complexity 1 21 0 237 212 15 15 chr13 40534443 40534509 -79210389 + (TA)n Simple_repeat Simple_repeat 2 67 0 710 196 0 0 chr13 40534512 40534624 -79210274 - FLAM_A SINE Alu -30 112 1 23 33 0 0 chr13 40534642 40534672 -79210226 + AT_rich Low_complexity Low_complexity 1 30 0 546 278 68 35 chr13 40534734 40534961 -79209937 - MIR SINE MIR -16 246 13 219 358 31 42 chr13 40535019 40535212 -79209686 - L2 LINE L2 -170 3102 2912 201 260 71 55 chr13 40535474 40535601 -79209297 - L2 LINE L2 -1317 1997 1869 329 319 184 20 chr13 40536170 40536778 -79208120 + L2 LINE L2 2174 2881 -433 491 368 93 33 chr13 40536867 40537316 -79207582 + L2 LINE L2 2498 2973 -341 338 317 48 10 chr13 40537712 40537816 -79207082 - L2 LINE L2 0 3272 3165 214 208 19 0 chr13 40538280 40538333 -79206565 + CT-rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr13 40538658 40538694 -79206204 + AT_rich Low_complexity Low_complexity 1 36 0 219 69 0 0 chr13 40538909 40538938 -79205960 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 275 194 37 0 chr13 40539091 40539199 -79205699 + (TA)n Simple_repeat Simple_repeat 1 112 0 2188 124 0 0 chr13 40539298 40539596 -79205302 + AluSg SINE Alu 1 298 -12 1650 164 11 4 chr13 40540323 40540591 -79204307 + AluJb SINE Alu 1 270 -42 189 0 0 0 chr13 40540599 40540620 -79204278 + (TC)n Simple_repeat Simple_repeat 2 22 0 260 109 0 0 chr13 40540642 40540688 -79204210 + LTR66 LTR ERVL 394 439 -171 192 303 56 22 chr13 40540744 40540833 -79204065 + MER5B DNA MER1_type 87 178 0 22 35 0 0 chr13 40540841 40540870 -79204028 + AT_rich Low_complexity Low_complexity 1 29 0 201 263 0 0 chr13 40541031 40541088 -79203810 + (TAA)n Simple_repeat Simple_repeat 2 58 0 255 296 169 17 chr13 40541089 40541261 -79203637 - MIR SINE MIR -1 261 64 280 240 47 54 chr13 40543042 40543171 -79201727 + MER103 DNA DNA 8 135 -31 270 0 0 0 chr13 40543550 40543580 -79201318 + (CA)n Simple_repeat Simple_repeat 2 31 0 759 284 111 19 chr13 40547236 40547817 -79197081 - L1P3 LINE L1 -312 5842 5202 517 296 74 7 chr13 40547954 40548251 -79196647 - L1M4 LINE L1 -1300 4846 4530 21 0 0 0 chr13 40548370 40548391 -79196507 + AT_rich Low_complexity Low_complexity 1 21 0 377 329 47 0 chr13 40548542 40548691 -79196207 - L1M4 LINE L1 -2036 4110 3955 2181 102 0 13 chr13 40549063 40549366 -79195532 + AluSc SINE Alu 1 299 -10 5793 135 12 3 chr13 40549379 40550299 -79194599 - L1P4 LINE L1 -1200 4946 4019 2259 153 40 1 chr13 40550292 40550784 -79194114 + L1P4 LINE L1 4947 5455 -713 * 641 200 0 0 chr13 40551522 40551637 -79193261 + FLAM_C SINE Alu 9 123 -20 446 0 19 0 chr13 40551652 40551706 -79193192 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 351 346 11 33 chr13 40552625 40552807 -79192091 + MER5B DNA MER1_type 1 178 0 280 157 0 0 chr13 40552957 40553008 -79191890 - L1MC4 LINE L1 -1340 6702 6652 5356 71 4 1 chr13 40553478 40554180 -79190718 - L1PA11 LINE L1 -8 6166 5463 233 167 0 56 chr13 40555287 40555359 -79189539 + T-rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr13 40555429 40555451 -79189447 + AT_rich Low_complexity Low_complexity 1 22 0 198 309 82 21 chr13 40555521 40555618 -79189280 + L3b LINE CR1 1299 1401 -182 241 275 175 17 chr13 40555975 40556095 -79188803 + MIR SINE MIR 3 141 -121 5381 193 37 26 chr13 40556144 40557565 -79187333 + L1M1 LINE L1 16 2171 -5394 2417 118 34 14 chr13 40557565 40557922 -79186976 - THE1B LTR MaLR 0 364 1 5381 193 37 26 chr13 40557922 40558027 -79186871 + L1M1 LINE L1 2171 2273 -5292 2163 249 20 15 chr13 40558128 40558786 -79186112 - L1P LINE L1 -2473 3673 3013 351 0 0 0 chr13 40560292 40560331 -79184567 + (TA)n Simple_repeat Simple_repeat 1 39 0 2681 32 3 0 chr13 40560337 40560647 -79184251 - AluY SINE Alu 0 311 1 597 289 79 21 chr13 40561038 40561228 -79183670 + MIR SINE MIR 61 261 -1 1793 167 7 3 chr13 40561381 40561668 -79183230 - AluJb SINE Alu -16 296 9 1798 67 20 20 chr13 40561675 40561929 -79182969 - L1PA7 LINE L1 -1 6153 5900 495 71 48 12 chr13 40561929 40562013 -79182885 + L1P LINE L1 4298 4384 -1762 390 240 20 0 chr13 40562113 40562213 -79182685 + MLT1D LTR MaLR 402 503 -2 362 236 69 48 chr13 40562573 40562724 -79182174 - MIR SINE MIR -6 256 100 198 267 59 59 chr13 40562757 40562892 -79182006 - L2 LINE L2 -1025 2289 2155 499 321 58 26 chr13 40564014 40564204 -79180694 - MIR SINE MIR -59 203 8 481 208 38 9 chr13 40564292 40564398 -79180500 + MER3 DNA MER1_type 1 109 -100 433 86 0 0 chr13 40564409 40564467 -79180431 - Alu SINE Alu -16 296 239 1884 138 33 0 chr13 40564568 40564870 -79180028 + AluSx SINE Alu 1 311 0 950 223 11 0 chr13 40565169 40565353 -79179545 + MER5A DNA MER1_type 4 189 0 1794 123 82 7 chr13 40567349 40567642 -79177256 - MSTA LTR MaLR -113 315 1 6978 156 19 16 chr13 40567652 40569905 -79174993 + L1MA3 LINE L1 4044 6302 -3 207 0 0 0 chr13 40569914 40569937 -79174961 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 554 88 0 25 chr13 40569939 40570019 -79174879 - MSTB1 LTR MaLR -53 379 302 378 212 168 62 chr13 40570811 40570990 -79173908 - HAL1b LINE L1 -201 1147 950 1009 266 22 33 chr13 40571066 40571434 -79173464 + L1ME1 LINE L1 5796 6159 -7 610 222 50 16 chr13 40572012 40572242 -79172656 + L1ME2 LINE L1 5796 6031 -144 22 0 0 0 chr13 40572364 40572386 -79172512 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 40572580 40572609 -79172289 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 222 28 chr13 40573596 40573740 -79171158 - L2 LINE L2 -856 2458 2287 1543 168 57 20 chr13 40573799 40574096 -79170802 + AluJo SINE Alu 5 312 0 285 109 0 0 chr13 40574105 40574151 -79170747 + (GGGGA)n Simple_repeat Simple_repeat 5 50 0 239 250 0 69 chr13 40575602 40575718 -79169180 + HAL1 LINE L1 1156 1263 -1244 1591 185 13 22 chr13 40575836 40576150 -79168748 + AluJo SINE Alu 1 311 -1 250 271 9 28 chr13 40576155 40576262 -79168636 + HAL1 LINE L1 1912 2016 -491 959 256 30 53 chr13 40576374 40576847 -79168051 + HAL1 LINE L1 2040 2501 -6 751 235 58 86 chr13 40577752 40578181 -79166717 - L1MC4 LINE L1 0 8042 7626 4846 82 28 10 chr13 40578425 40578779 -79166119 + L1PB2 LINE L1 5428 5774 -377 444 37 0 0 chr13 40578779 40578833 -79166065 + (CA)n Simple_repeat Simple_repeat 2 55 0 4846 82 28 10 chr13 40578833 40579188 -79165710 + L1PB2 LINE L1 5774 6150 -1 2436 70 0 3 chr13 40579210 40579509 -79165389 + AluY SINE Alu 1 298 -13 22 0 0 0 chr13 40579556 40579578 -79165320 + AT_rich Low_complexity Low_complexity 1 22 0 308 289 18 44 chr13 40580407 40580521 -79164377 - MIR3 SINE MIR -25 183 73 313 339 63 25 chr13 40580523 40580685 -79164213 - MIR SINE MIR -65 143 26 25 0 0 0 chr13 40580992 40581017 -79163881 + AT_rich Low_complexity Low_complexity 1 25 0 7656 27 0 0 chr13 40581017 40581975 -79162923 - L1PA4 LINE L1 -1 6154 5199 344 372 51 5 chr13 40582858 40583073 -79161825 - L2 LINE L2 -244 3028 2804 425 271 157 7 chr13 40583075 40583215 -79161683 + MER5B DNA MER1_type 1 161 -17 425 316 41 18 chr13 40583203 40583374 -79161524 - L2 LINE L2 -487 2827 2653 2025 136 35 32 chr13 40583891 40584265 -79160633 + THE1C LTR MaLR 1 375 0 2293 114 0 0 chr13 40585110 40585418 -79159480 + AluSg SINE Alu 1 308 -2 1910 214 153 28 chr13 40585852 40586507 -79158391 + L1M3e LINE L1 1431 2172 -4865 3688 158 31 52 chr13 40586515 40586912 -79157986 - L1MA9 LINE L1 -131 6169 5765 2542 103 11 0 chr13 40586912 40587263 -79157635 + THE1A LTR MaLR 1 355 0 3688 158 31 52 chr13 40587263 40588546 -79156352 - L1MA9 LINE L1 -535 5765 4558 1573 142 8 4 chr13 40588534 40588801 -79156097 - L1MA9 LINE L1 -1888 4258 3991 * 2130 199 65 7 chr13 40588799 40589356 -79155542 - L1MA9 LINE L1 -2414 3732 3144 1489 223 87 118 chr13 40589454 40590217 -79154681 + HsTC2a DNA Tc2 6 744 0 428 98 39 0 chr13 40590807 40590909 -79153989 + (TA)n Simple_repeat Simple_repeat 2 107 0 592 237 43 38 chr13 40590958 40591169 -79153729 + L1MB4 LINE L1 5778 5989 -191 * 1454 189 122 4 chr13 40590989 40591327 -79153571 + L1ME1 LINE L1 5800 6332 -2 824 211 0 7 chr13 40591349 40591501 -79153397 + MER58B DNA MER1_type 188 338 -3 1740 186 0 0 chr13 40591557 40591832 -79153066 + AluSx SINE Alu 1 275 -37 270 0 0 0 chr13 40591837 40591867 -79153031 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1898 165 0 16 chr13 40592042 40592358 -79152540 + AluJb SINE Alu 1 311 -1 2072 173 143 30 chr13 40593255 40593722 -79151176 + MLT2B1 LTR ERVL 1 520 0 2197 113 0 19 chr13 40593827 40594138 -79150760 + AluSx SINE Alu 1 305 -7 709 191 11 85 chr13 40594435 40594624 -79150274 + FRAM SINE Alu 1 40 0 29 0 0 0 chr13 40596481 40596510 -79148388 + AT_rich Low_complexity Low_complexity 1 29 0 903 104 0 0 chr13 40596601 40596726 -79148172 + AluSg/x SINE Alu 170 294 -18 272 123 9 132 chr13 40596727 40596839 -79148059 + L1MB4 LINE L1 5236 5334 -815 * 5686 191 39 7 chr13 40596838 40598480 -79146418 + L1PA16 LINE L1 4019 5710 -456 2900 78 20 8 chr13 40598480 40598875 -79146023 + MLT2A1 LTR ERVL 1 400 -44 386 78 0 16 chr13 40598876 40598940 -79145958 + (TG)n Simple_repeat Simple_repeat 2 64 0 303 59 0 4 chr13 40599109 40599155 -79145743 + MLT2A2 LTR ERVL 400 453 0 2272 155 59 11 chr13 40599155 40599593 -79145305 + L1PA16 LINE L1 5706 6164 -2 4610 150 22 29 chr13 40599607 40600420 -79144478 + L1MB4 LINE L1 5322 6130 -50 1451 105 5 14 chr13 40600420 40600629 -79144269 + AluSq SINE Alu 97 303 -10 4610 150 22 29 chr13 40600629 40600680 -79144218 + L1MB4 LINE L1 6130 6180 0 1393 206 3 0 chr13 40600805 40601115 -79143783 - L1MA4 LINE L1 -11 6289 5979 2199 105 3 7 chr13 40601685 40601979 -79142919 + AluSx SINE Alu 1 293 -19 357 82 0 0 chr13 40601995 40602044 -79142854 + (TG)n Simple_repeat Simple_repeat 2 50 0 199 260 71 55 chr13 40602376 40602503 -79142395 + L2 LINE L2 1869 1997 -1317 233 361 26 41 chr13 40602765 40602959 -79141939 + L2 LINE L2 2912 3102 -170 591 260 82 42 chr13 40603017 40603243 -79141655 + MIR SINE MIR 13 246 -16 23 33 0 0 chr13 40603305 40603335 -79141563 + AT_rich Low_complexity Low_complexity 1 30 0 721 196 0 0 chr13 40603353 40603465 -79141433 + FLAM_A SINE Alu 1 112 -30 237 212 15 15 chr13 40603468 40603534 -79141364 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 0 0 0 chr13 40604191 40604212 -79140686 + AT_rich Low_complexity Low_complexity 1 21 0 2313 76 0 13 chr13 40604222 40604537 -79140361 + AluY SINE Alu 1 311 0 187 242 65 32 chr13 40604894 40604956 -79139942 + L2 LINE L2 3246 3309 -4 2261 101 10 3 chr13 40604973 40605280 -79139618 + AluSx SINE Alu 3 311 -1 2267 98 10 0 chr13 40605976 40606281 -79138617 + AluSx SINE Alu 1 308 -4 496 223 127 0 chr13 40606609 40606775 -79138123 + L2 LINE L2 2386 2572 -742 8446 30 0 0 chr13 40606921 40608698 -79136200 - L1PA3 LINE L1 0 6155 4382 12589 28 0 1 chr13 40608692 40610200 -79134698 + L1PA3 LINE L1 2879 4385 -1761 23 33 0 0 chr13 40610241 40610271 -79134627 + AT_rich Low_complexity Low_complexity 1 30 0 360 323 24 24 chr13 40610588 40610715 -79134183 + L2 LINE L2 3186 3312 -1 181 250 42 0 chr13 40610793 40610841 -79134057 - L2 LINE L2 -528 2786 2737 212 357 49 27 chr13 40610990 40611253 -79133645 + L2 LINE L2 1657 1925 -1389 2807 254 102 8 chr13 40611256 40612298 -79132600 + L2 LINE L2 2039 3272 -41 584 361 95 22 chr13 40612350 40612885 -79132013 + L2 LINE L2 1931 2504 -810 185 339 35 58 chr13 40613035 40613206 -79131692 + L2 LINE L2 3146 3312 -1 258 164 0 0 chr13 40614925 40614980 -79129918 + CT-rich Low_complexity Low_complexity 2 56 0 378 61 0 0 chr13 40614987 40615036 -79129862 + (CA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr13 40615202 40615231 -79129667 + AT_rich Low_complexity Low_complexity 1 29 0 4039 226 113 58 chr13 40615849 40617006 -79127892 - L1MC4 LINE L1 -64 7978 6724 5937 89 29 73 chr13 40617006 40618343 -79126555 - SVA Other Other -518 1073 7 4039 226 113 58 chr13 40618343 40618624 -79126274 - L1MC4 LINE L1 -1318 6724 6460 207 242 15 38 chr13 40618743 40618875 -79126023 + GA-rich Low_complexity Low_complexity 3 131 0 294 336 86 51 chr13 40619143 40619515 -79125383 + L2 LINE L2 2150 2534 -780 713 224 99 48 chr13 40619530 40619656 -79125242 + L1MC4 LINE L1 7713 7831 -211 2578 97 22 8 chr13 40619656 40620026 -79124872 + THE1C LTR MaLR 1 375 0 713 224 99 48 chr13 40620026 40620212 -79124686 + L1MC4 LINE L1 7831 8041 -1 474 18 0 0 chr13 40620380 40620435 -79124463 + (CATA)n Simple_repeat Simple_repeat 4 58 0 280 347 25 30 chr13 40620922 40621121 -79123777 + LTR16C LTR ERVL 73 270 -221 26 30 0 0 chr13 40621542 40621575 -79123323 + AT_rich Low_complexity Low_complexity 1 33 0 467 316 120 14 chr13 40623299 40623465 -79121433 - MIR SINE MIR -3 259 72 213 358 78 26 chr13 40623465 40623658 -79121240 + MIR SINE MIR 1 203 -59 24 0 0 0 chr13 40624309 40624333 -79120565 + AT_rich Low_complexity Low_complexity 1 24 0 2260 112 0 0 chr13 40624882 40625178 -79119720 - AluSx SINE Alu -16 296 1 605 176 66 44 chr13 40626089 40626225 -79118673 - L2 LINE L2 0 3313 3175 * 691 275 42 17 chr13 40626208 40626444 -79118454 - L2 LINE L2 -492 2822 2581 276 358 45 8 chr13 40626475 40626609 -79118289 + L2 LINE L2 3133 3271 -1 255 320 0 13 chr13 40626609 40626724 -79118174 + GA-rich Low_complexity Low_complexity 1 113 0 611 304 23 6 chr13 40627188 40627359 -79117539 + MIR3 SINE MIR 30 203 -5 200 351 138 22 chr13 40627969 40628331 -79116567 + L2 LINE L2 2087 2490 -824 23 0 0 0 chr13 40628955 40628978 -79115920 + AT_rich Low_complexity Low_complexity 1 23 0 2019 118 0 0 chr13 40629103 40629374 -79115524 + AluSg SINE Alu 1 271 -39 1794 190 17 27 chr13 40630021 40630432 -79114466 + L1MC4a LINE L1 7064 7470 -338 231 257 204 9 chr13 40630688 40630801 -79114097 - MIR SINE MIR -50 212 78 189 121 0 0 chr13 40631326 40631359 -79113539 + (T)n Simple_repeat Simple_repeat 1 33 0 618 282 97 35 chr13 40632135 40632628 -79112270 + L1ME4a LINE L1 5360 5883 -238 1892 148 53 6 chr13 40632681 40633039 -79111859 + L1M2 LINE L1 5256 5630 -670 1284 91 59 0 chr13 40633068 40633254 -79111644 - LTR12 LTR ERV1 -133 581 385 351 226 11 14 chr13 40633254 40633361 -79111537 - LTR30 LTR ERV1 -94 620 377 4094 148 80 77 chr13 40633361 40634508 -79110390 - pTR5 LTR ERV1 -413 2025 741 25 31 0 0 chr13 40634592 40634624 -79110274 + AT_rich Low_complexity Low_complexity 1 32 0 276 323 73 16 chr13 40635464 40635588 -79109310 + L3b LINE CR1 1259 1389 -194 246 366 45 18 chr13 40635884 40635996 -79108902 + MIR SINE MIR 31 145 -63 263 261 143 25 chr13 40636262 40636381 -79108517 + MIR SINE MIR 64 196 -66 214 143 0 48 chr13 40636439 40636471 -79108427 + (CAT)n Simple_repeat Simple_repeat 2 33 -8 863 223 6 6 chr13 40636471 40636637 -79108261 - FRAM SINE Alu 0 166 1 214 143 0 48 chr13 40636637 40636646 -79108252 + (CAT)n Simple_repeat Simple_repeat 33 41 0 460 314 144 16 chr13 40636661 40636855 -79108043 + MIR SINE MIR 3 221 -41 2065 128 10 3 chr13 40636947 40637252 -79107646 + AluSx SINE Alu 1 307 -5 315 146 0 0 chr13 40637252 40637307 -79107591 + (TA)n Simple_repeat Simple_repeat 1 55 0 460 240 45 83 chr13 40637455 40637743 -79107155 + L1ME4a LINE L1 5710 5986 -135 393 238 139 16 chr13 40637839 40637961 -79106937 + L2 LINE L2 3173 3309 -4 272 328 85 17 chr13 40639008 40639185 -79105713 - L2 LINE L2 -420 2894 2706 24 53 0 0 chr13 40639424 40639462 -79105436 + AT_rich Low_complexity Low_complexity 1 38 0 30 27 0 0 chr13 40639673 40639710 -79105188 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr13 40640328 40640372 -79104526 + AT_rich Low_complexity Low_complexity 1 44 0 795 103 0 0 chr13 40640479 40640586 -79104312 + U6 snRNA snRNA 1 107 0 27 96 0 0 chr13 40640789 40640872 -79104026 + AT_rich Low_complexity Low_complexity 1 83 0 415 258 66 91 chr13 40640971 40641335 -79103563 - L1MC4 LINE L1 -425 7617 7263 420 203 129 18 chr13 40641422 40641582 -79103316 - L1MC4a LINE L1 -527 7281 7146 800 295 88 47 chr13 40641738 40642395 -79102503 - L1MC4a LINE L1 -1814 5994 5311 2231 113 0 19 chr13 40643545 40643854 -79101044 + AluSx SINE Alu 1 303 -9 211 198 0 47 chr13 40643899 40643985 -79100913 + GA-rich Low_complexity Low_complexity 6 87 0 1962 139 7 23 chr13 40644416 40644719 -79100179 - AluSx SINE Alu -12 300 3 1977 116 31 3 chr13 40645673 40645966 -79098932 + AluSg SINE Alu 1 301 -9 2345 107 0 0 chr13 40646415 40646723 -79098175 - AluSx SINE Alu -2 310 3 324 302 23 12 chr13 40646839 40646925 -79097973 + MIR SINE MIR 50 136 -126 253 206 22 0 chr13 40647604 40647696 -79097202 + (TA)n Simple_repeat Simple_repeat 2 95 0 313 270 177 11 chr13 40648273 40648526 -79096372 + L1ME LINE L1 5618 5922 -242 658 209 71 67 chr13 40649240 40649321 -79095577 + MER106A DNA MER1_type 26 105 -131 1428 101 206 13 chr13 40649321 40649559 -79095339 + AluSg1 SINE Alu 1 284 -25 658 209 71 67 chr13 40649559 40649687 -79095211 + MER106A DNA MER1_type 105 236 0 250 188 0 139 chr13 40650698 40650799 -79094099 + MER20B DNA MER1_type 1 87 -696 932 206 121 0 chr13 40651354 40651553 -79093345 + MIR SINE MIR 19 241 -21 247 358 108 20 chr13 40651561 40651709 -79093189 - MIR SINE MIR -101 161 1 285 319 52 84 chr13 40652649 40652779 -79092119 + MIR SINE MIR 2 126 -136 332 78 0 78 chr13 40652779 40652843 -79092055 - L1PA8 LINE L1 -1 6171 6113 285 319 52 84 chr13 40652843 40652903 -79091995 + MIR SINE MIR 126 186 -76 203 244 154 39 chr13 40653451 40653529 -79091369 - L2 LINE L2 0 3313 3227 649 209 20 7 chr13 40654197 40654350 -79090548 + L1M4 LINE L1 2739 2893 -3253 7550 227 48 94 chr13 40654360 40655746 -79089152 + L1MA9 LINE L1 402 1851 -5715 17873 51 0 2 chr13 40655746 40658807 -79086091 + L1PA5 LINE L1 3087 6150 -4 7550 227 48 94 chr13 40658807 40659739 -79085159 + L1MA9 LINE L1 1851 2825 -4741 269 211 26 0 chr13 40659739 40659815 -79085083 + G-rich Low_complexity Low_complexity 5 82 0 7550 227 48 94 chr13 40659815 40660123 -79084775 + L1MA9 LINE L1 2825 2692 -4874 896 59 0 8 chr13 40660123 40660258 -79084640 - L1PA5 LINE L1 0 6154 6028 7550 227 48 94 chr13 40660258 40660931 -79083967 + L1MA9 LINE L1 2691 3394 -4172 3777 225 59 15 chr13 40662916 40664287 -79080611 + L1MA9 LINE L1 3344 4767 -2798 * 3838 165 53 70 chr13 40664284 40664513 -79080385 + L1MA9 LINE L1 5911 6142 -1589 2036 156 10 0 chr13 40664513 40664814 -79080084 - AluJo SINE Alu -8 304 1 3838 165 53 70 chr13 40664814 40665862 -79079036 + L1MA9 LINE L1 6142 7206 -525 1381 201 69 34 chr13 40665862 40666211 -79078687 + MER46B DNA MER2_type 1 236 0 3838 165 53 70 chr13 40666211 40666230 -79078668 + L1MA9 LINE L1 7206 7224 -507 2526 65 0 3 chr13 40666230 40666537 -79078361 + AluSc SINE Alu 1 306 -3 3838 165 53 70 chr13 40666537 40667065 -79077833 + L1MA9 LINE L1 7224 7694 -37 * 7367 218 55 33 chr13 40667060 40670293 -79074605 + L1MB7 LINE L1 2860 6184 0 24 67 0 0 chr13 40670940 40670985 -79073913 + AT_rich Low_complexity Low_complexity 1 45 0 497 327 54 40 chr13 40671232 40671786 -79073112 - L1MC/D LINE L1 -1985 5823 5262 1609 103 34 4 chr13 40671963 40672225 -79072673 + L1MA8 LINE L1 5989 6258 -33 921 146 46 48 chr13 40672225 40672516 -79072382 + MER7A DNA MER2_type 1 241 -105 3300 120 29 0 chr13 40672516 40673006 -79071892 - MER1A DNA MER1_type 0 529 26 551 177 26 35 chr13 40673011 40673124 -79071774 + MER7A DNA MER2_type 225 336 0 32 0 0 0 chr13 40673141 40673173 -79071725 + AT_rich Low_complexity Low_complexity 1 32 0 2125 111 7 13 chr13 40673240 40673538 -79071360 + AluSx SINE Alu 1 296 -16 2375 92 0 0 chr13 40673732 40674026 -79070872 + AluSg SINE Alu 1 294 -16 241 309 200 17 chr13 40675432 40675607 -79069291 + MIR3 SINE MIR 2 208 0 481 303 81 20 chr13 40677062 40677260 -79067638 - MIR SINE MIR 0 262 53 23 33 0 0 chr13 40677585 40677615 -79067283 + AT_rich Low_complexity Low_complexity 1 30 0 478 319 53 30 chr13 40677623 40677984 -79066914 + L1ME LINE L1 21 389 -6034 410 220 19 53 chr13 40678454 40678663 -79066235 + L1ME LINE L1 3920 4121 -2820 832 244 32 10 chr13 40678775 40679182 -79065716 + L1ME LINE L1 5812 6235 -722 2108 101 3 10 chr13 40679182 40679499 -79065399 + AluSx SINE Alu 1 315 0 542 218 30 0 chr13 40679539 40679672 -79065226 + L1MCc LINE L1 320 456 -6383 567 152 0 30 chr13 40679721 40679820 -79065078 - AluJ SINE Alu -5 307 212 811 112 0 64 chr13 40679836 40679961 -79064937 - AluJ SINE Alu -182 130 14 4611 227 75 29 chr13 40679988 40682013 -79062885 + L1MCc LINE L1 562 2808 -4314 2561 153 50 7 chr13 40682144 40682609 -79062289 + MER31A LTR ERV1 1 485 0 206 353 180 7 chr13 40682666 40682816 -79062082 - L2 LINE L2 -425 2889 2714 3326 163 58 47 chr13 40682835 40683014 -79061884 + L1MB7 LINE L1 5406 5582 -602 1880 141 20 10 chr13 40683014 40683320 -79061578 + AluSx SINE Alu 1 309 -3 3326 163 58 47 chr13 40683320 40683903 -79060995 + L1MB7 LINE L1 5582 6176 -8 1760 216 115 46 chr13 40683909 40684554 -79060344 + L1ME2 LINE L1 5428 6122 -42 3565 52 5 0 chr13 40684554 40684997 -79059901 + L1PA7 LINE L1 5710 6154 0 1760 216 115 46 chr13 40684997 40685022 -79059876 + L1ME2 LINE L1 6122 6144 -20 357 222 120 18 chr13 40685073 40685240 -79059658 + L1MC5 LINE L1 7724 7907 -54 2401 93 0 0 chr13 40685729 40686029 -79058869 - AluY SINE Alu -11 300 1 2366 110 0 0 chr13 40686029 40686330 -79058568 - AluSx SINE Alu -11 301 1 2328 103 0 0 chr13 40686496 40686797 -79058101 + AluSx SINE Alu 1 301 -11 239 212 424 0 chr13 40687111 40687210 -79057688 - MIR SINE MIR 0 262 122 735 204 44 7 chr13 40687473 40687610 -79057288 + MER5A DNA MER1_type 34 175 -14 797 211 12 0 chr13 40688151 40688317 -79056581 - LTR33 LTR ERVL -28 493 326 266 115 0 0 chr13 40688409 40688461 -79056437 + L1MCc LINE L1 3275 3326 -3615 378 177 52 0 chr13 40688588 40688684 -79056214 + L1MCc LINE L1 3389 3489 -3452 946 202 28 44 chr13 40688791 40688885 -79056013 + L1MCc LINE L1 3470 3564 -3377 2190 104 3 19 chr13 40688885 40689192 -79055706 + AluSq SINE Alu 1 302 -11 946 202 28 44 chr13 40689192 40689345 -79055553 + L1MCc LINE L1 3564 3713 -3228 242 294 20 39 chr13 40689345 40689447 -79055451 + MER117 DNA MER1_type 98 197 0 290 310 65 73 chr13 40689574 40689806 -79055092 + L2 LINE L2 2204 2433 -881 662 211 54 111 chr13 40689965 40690316 -79054582 + Charlie2 DNA MER1_type 2532 2862 0 216 292 167 0 chr13 40690357 40690429 -79054469 + L2 LINE L2 3187 3270 -2 717 322 31 6 chr13 40690716 40691036 -79053862 + MER57-int LTR ERV1 6816 7143 -394 1002 268 108 18 chr13 40691038 40691426 -79053472 + MER57B LTR ERV1 1 423 -11 1329 157 0 22 chr13 40691461 40691684 -79053214 - MER20 DNA MER1_type -1 218 1 2067 126 3 17 chr13 40692322 40692469 -79052429 + AluSx SINE Alu 3 150 -162 2515 111 6 6 chr13 40692469 40692831 -79052067 + THE1B LTR MaLR 3 364 0 2067 126 3 17 chr13 40692831 40692984 -79051914 + AluSx SINE Alu 150 299 -13 551 260 143 17 chr13 40694507 40694738 -79050160 - MIR SINE MIR 0 262 3 183 100 0 0 chr13 40694848 40694878 -79050020 + (A)n Simple_repeat Simple_repeat 1 30 0 2269 43 20 23 chr13 40694968 40695269 -79049629 - AluY SINE Alu -11 300 1 333 312 55 18 chr13 40695560 40695669 -79049229 + MIR3 SINE MIR 75 187 -21 297 309 81 7 chr13 40695965 40696101 -79048797 - MIR3 SINE MIR -34 174 29 227 264 0 0 chr13 40697628 40697681 -79047217 - MIR SINE MIR -53 209 157 423 230 170 7 chr13 40697715 40697850 -79047048 - MIR SINE MIR -18 244 88 1678 152 0 19 chr13 40698013 40698276 -79046622 - AluJo SINE Alu -16 296 39 209 339 17 0 chr13 40698280 40698339 -79046559 - L2 LINE L2 -16 3256 3197 213 328 68 68 chr13 40698447 40698682 -79046216 - L2 LINE L2 -224 3048 2814 2340 103 3 0 chr13 40699333 40699643 -79045255 + AluSx SINE Alu 1 311 -1 570 242 15 72 chr13 40699837 40700004 -79044894 - MER5A DNA MER1_type 0 189 22 2370 112 0 3 chr13 40700070 40700384 -79044514 + AluSp SINE Alu 1 313 0 1966 153 10 0 chr13 40700436 40700731 -79044167 - AluJb SINE Alu -14 298 1 357 284 148 7 chr13 40700836 40700991 -79043907 - L1MC/D LINE L1 -2376 5432 5256 734 277 62 22 chr13 40701098 40701224 -79043674 + MIR SINE MIR 20 160 -102 2204 100 10 3 chr13 40701224 40701523 -79043375 + AluSc SINE Alu 1 301 -8 734 277 62 22 chr13 40701523 40701620 -79043278 + MIR SINE MIR 160 252 -10 189 0 0 0 chr13 40702948 40702969 -79041929 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 21 0 0 0 chr13 40702969 40702990 -79041908 + AT_rich Low_complexity Low_complexity 1 21 0 2193 119 0 0 chr13 40702990 40703276 -79041622 - AluSx SINE Alu -26 286 1 205 276 52 17 chr13 40703625 40703683 -79041215 + L2 LINE L2 2942 3001 -312 382 263 113 30 chr13 40703733 40703866 -79041032 + L2 LINE L2 3166 3309 -4 23 54 0 0 chr13 40704045 40704082 -79040816 + AT_rich Low_complexity Low_complexity 1 37 0 1194 185 8 4 chr13 40704082 40704336 -79040562 - L1MB3 LINE L1 -7 6176 5922 1467 223 112 23 chr13 40704371 40704843 -79040055 - MLT2B1 LTR ERVL -6 514 1 2910 123 6 12 chr13 40704843 40705331 -79039567 - L1MB3 LINE L1 -255 5928 5444 323 258 15 0 chr13 40706227 40706293 -79038605 - L2 LINE L2 -21 3251 3185 705 267 133 65 chr13 40706487 40706899 -79037999 + MER21B LTR ERV1 98 537 -326 300 209 73 36 chr13 40706934 40707044 -79037854 + MER21B LTR ERV1 626 739 -124 200 349 0 0 chr13 40707176 40707242 -79037656 - MIR SINE MIR -113 149 84 38 39 0 0 chr13 40708005 40708057 -79036841 + AT_rich Low_complexity Low_complexity 1 52 0 263 189 113 47 chr13 40708145 40708251 -79036647 - MER20B DNA MER1_type -639 144 32 492 84 12 48 chr13 40708399 40708482 -79036416 - MADE1 DNA Mariner 0 80 1 1925 114 10 55 chr13 40709476 40709784 -79035114 - AluSc SINE Alu -15 294 1 2388 88 3 0 chr13 40710619 40710926 -79033972 + AluSc SINE Alu 2 309 0 572 246 205 8 chr13 40711102 40711370 -79033528 + L1ME1 LINE L1 5522 5842 -279 460 254 16 8 chr13 40711957 40712079 -79032819 - L2 LINE L2 -996 2318 2196 1136 181 10 20 chr13 40712096 40712300 -79032598 + MER20 DNA MER1_type 1 202 -17 496 159 103 111 chr13 40712541 40712667 -79032231 - FLAM_C SINE Alu -10 133 9 402 323 56 60 chr13 40712668 40713121 -79031777 + L2 LINE L2 2536 3271 -1 238 317 144 37 chr13 40713162 40713433 -79031465 - L2 LINE L2 -1144 2170 1871 1042 288 79 4 chr13 40713434 40713701 -79031197 - MLT2E LTR ERVL -306 322 36 1232 254 57 35 chr13 40713765 40714276 -79030622 - L1MEc LINE L1 -4564 1832 1311 596 214 23 88 chr13 40714412 40714627 -79030271 + L2 LINE L2 3113 3313 0 220 289 105 0 chr13 40714768 40714882 -79030016 - L2 LINE L2 -1503 1811 1686 408 318 76 33 chr13 40715067 40715397 -79029501 + ERVL LTR ERVL 5041 5384 -380 2144 126 0 0 chr13 40715436 40715737 -79029161 + AluSx SINE Alu 1 301 -11 719 286 143 34 chr13 40715830 40716242 -79028656 + LTR16A1 LTR ERVL 1 457 0 600 232 65 7 chr13 40716638 40716776 -79028122 + MER5A DNA MER1_type 7 152 -37 806 171 12 18 chr13 40716817 40716981 -79027917 + L1MB5 LINE L1 6012 6174 0 711 227 87 19 chr13 40716982 40717189 -79027709 + L1ME1 LINE L1 5941 6161 -5 191 256 0 0 chr13 40717220 40717263 -79027635 + MER5A DNA MER1_type 147 189 0 1487 215 106 81 chr13 40717273 40717831 -79027067 + Charlie7 DNA MER1_type 3 574 -2038 * 2247 229 53 14 chr13 40717829 40718414 -79026484 + Charlie7 DNA MER1_type 1765 2372 -240 299 334 145 22 chr13 40718443 40718754 -79026144 + L2 LINE L2 2150 2498 -816 243 325 160 15 chr13 40719289 40719495 -79025403 + L2 LINE L2 2153 2388 -926 303 67 40 40 chr13 40719624 40719699 -79025199 + (TA)n Simple_repeat Simple_repeat 2 76 0 185 296 220 31 chr13 40720442 40720601 -79024297 - L2 LINE L2 -572 2742 2554 282 326 8 31 chr13 40720670 40720799 -79024099 + GA-rich Low_complexity Low_complexity 5 130 0 325 324 75 68 chr13 40721962 40722401 -79022497 + LTR16A LTR ERVL 1 442 -8 528 82 118 12 chr13 40722441 40722526 -79022372 - AluS SINE Alu -218 95 2 22 0 0 0 chr13 40722623 40722645 -79022253 + AT_rich Low_complexity Low_complexity 1 22 0 2221 116 0 3 chr13 40723003 40723305 -79021593 - AluSx SINE Alu -11 301 1 625 293 82 77 chr13 40724055 40724081 -79020817 - L3 LINE CR1 -1 1576 1552 2133 117 13 0 chr13 40724081 40724379 -79020519 + AluSx SINE Alu 1 302 -10 625 293 82 77 chr13 40724379 40724779 -79020119 - L3 LINE CR1 -25 1552 1148 1699 190 26 21 chr13 40724841 40725153 -79019745 + L1MC4a LINE L1 5171 5486 -698 2322 80 10 3 chr13 40725153 40725453 -79019445 + AluSq SINE Alu 1 302 -11 1699 190 26 21 chr13 40725453 40725577 -79019321 + L1MC4a LINE L1 5486 5608 -576 272 306 135 40 chr13 40726428 40726549 -79018349 - MIR SINE MIR -14 248 140 1955 147 0 16 chr13 40726549 40726856 -79018042 - AluJb SINE Alu -10 302 1 272 306 135 40 chr13 40726856 40726956 -79017942 - MIR SINE MIR -122 140 6 2112 124 10 7 chr13 40727029 40727336 -79017562 + AluSx SINE Alu 1 308 -4 1754 131 11 11 chr13 40727336 40727601 -79017297 - L1MB4 LINE L1 -20 6160 5893 437 294 113 32 chr13 40727862 40728083 -79016815 - MIR SINE MIR -10 252 14 749 205 0 0 chr13 40729649 40729771 -79015127 + FRAM SINE Alu 1 122 -54 839 204 14 64 chr13 40729778 40729998 -79014900 + AluJo SINE Alu 89 297 -15 2260 92 24 0 chr13 40730460 40730752 -79014146 - AluSg SINE Alu -3 307 9 21 0 0 0 chr13 40731057 40731078 -79013820 + AT_rich Low_complexity Low_complexity 1 21 0 2172 148 8 8 chr13 40732781 40733140 -79011758 - L1MB3 LINE L1 -3 6180 5822 251 305 17 0 chr13 40733397 40733456 -79011442 - MER5A DNA MER1_type -67 122 63 249 280 195 38 chr13 40733486 40733747 -79011151 - L3 LINE CR1 -196 1381 1080 1458 218 82 62 chr13 40733805 40734305 -79010593 + MLT1E3 LTR MaLR 115 624 0 814 293 14 20 chr13 40735778 40736075 -79008823 + L1MC4a LINE L1 5643 5937 -1871 516 261 68 6 chr13 40736151 40736327 -79008571 - LTR33A LTR ERVL 0 523 337 282 225 11 67 chr13 40737255 40737344 -79007554 + LTR16C LTR ERVL 408 491 0 201 233 0 0 chr13 40737575 40737618 -79007280 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2537 83 0 0 chr13 40737891 40738204 -79006694 - AluSq SINE Alu 0 313 1 1939 141 0 0 chr13 40739300 40739570 -79005328 + AluSx SINE Alu 3 272 -40 272 25 50 0 chr13 40739582 40739622 -79005276 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 1987 164 2 97 chr13 40739795 40740046 -79004852 + MLT1A1 LTR MaLR 1 201 -164 2454 47 0 20 chr13 40740046 40740346 -79004552 - AluY SINE Alu -17 294 1 1987 164 2 97 chr13 40740346 40740497 -79004401 + MLT1A1 LTR MaLR 201 365 0 249 350 83 17 chr13 40740517 40740697 -79004201 + MIR SINE MIR 35 226 -36 224 388 84 14 chr13 40740739 40741097 -79003801 + L2 LINE L2 1896 2278 -1036 662 288 109 43 chr13 40741752 40742120 -79002778 + LTR16C LTR ERVL 100 491 0 2098 128 0 16 chr13 40742300 40742606 -79002292 - AluJb SINE Alu -11 301 1 1922 172 85 19 chr13 40744351 40744717 -79000181 + MLT1B LTR MaLR 1 390 0 2078 128 3 16 chr13 40744944 40745257 -78999641 + AluSx SINE Alu 1 309 -3 502 278 141 43 chr13 40745703 40746030 -78998868 + L2 LINE L2 2616 2974 -340 222 245 0 0 chr13 40746097 40746146 -78998752 + (TAA)n Simple_repeat Simple_repeat 2 50 0 873 307 39 14 chr13 40747929 40748366 -78996532 - L1MC4a LINE L1 -1867 5941 5494 1078 159 0 6 chr13 40748410 40748580 -78996318 - FRAM SINE Alu -7 169 1 39 0 0 0 chr13 40748843 40748882 -78996016 + AT_rich Low_complexity Low_complexity 1 39 0 848 141 0 40 chr13 40749562 40749711 -78995187 - FAM SINE Alu 0 49 1 250 197 106 0 chr13 40751015 40751081 -78993817 + LTR33A LTR ERVL 451 523 0 2255 111 3 0 chr13 40751986 40752293 -78992605 + AluSc SINE Alu 1 308 -1 583 286 25 20 chr13 40752723 40752926 -78991972 - ERVL LTR ERVL -772 4992 4789 2458 141 27 83 chr13 40753074 40753383 -78991515 + L1MA9 LINE L1 5790 6115 -197 674 238 16 0 chr13 40753383 40753505 -78991393 + FLAM_A SINE Alu 1 124 -9 2458 141 27 83 chr13 40753505 40753608 -78991290 + L1MA9 LINE L1 6115 6166 -146 1989 156 0 0 chr13 40753608 40753910 -78990988 + AluSq SINE Alu 1 302 -11 2458 141 27 83 chr13 40753910 40754050 -78990848 + L1MA9 LINE L1 6166 6312 0 329 287 153 0 chr13 40754678 40754887 -78990011 - L1MC4a LINE L1 -1532 4614 4374 381 305 6 12 chr13 40754980 40755144 -78989754 - L1MC4a LINE L1 -2106 4040 3878 2273 100 0 3 chr13 40755839 40756139 -78988759 + AluY SINE Alu 1 299 -12 2452 72 0 7 chr13 40756589 40756894 -78988004 - AluY SINE Alu -8 303 1 2035 157 103 0 chr13 40757789 40758120 -78986778 + MLT1A1 LTR MaLR 1 365 0 859 269 88 0 chr13 40758580 40758818 -78986080 + MIR SINE MIR 2 260 -2 3336 274 60 34 chr13 40758834 40759861 -78985037 - L2 LINE L2 -4 3309 2239 2400 171 44 35 chr13 40759861 40760340 -78984558 - MER66B LTR ERV1 -3 483 1 3336 274 60 34 chr13 40760340 40760799 -78984099 - L2 LINE L2 -1074 2239 1794 198 0 0 0 chr13 40761724 40761746 -78983152 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 414 0 0 0 chr13 40761745 40761791 -78983107 + (GA)n Simple_repeat Simple_repeat 1 46 0 1789 158 0 0 chr13 40761791 40762069 -78982829 - AluJb SINE Alu -34 278 1 306 309 44 97 chr13 40762580 40762900 -78981998 + L2 LINE L2 2804 3106 -166 212 305 0 0 chr13 40762956 40763015 -78981883 + L2 LINE L2 3255 3313 0 27 29 0 0 chr13 40763115 40763149 -78981749 + AT_rich Low_complexity Low_complexity 1 34 0 548 191 63 24 chr13 40764388 40764514 -78980384 + MIR SINE MIR 58 188 -74 203 337 139 10 chr13 40764739 40764829 -78980069 - MIR SINE MIR -34 228 151 1909 119 0 63 chr13 40764829 40765163 -78979735 + AluSx SINE Alu 1 315 0 203 337 139 10 chr13 40765163 40765273 -78979625 - MIR SINE MIR -111 151 1 2081 127 0 3 chr13 40765793 40766084 -78978814 - AluSx SINE Alu -22 290 1 349 254 0 0 chr13 40766193 40766260 -78978638 + MER1B DNA MER1_type 1 67 -270 14469 22 3 1 chr13 40766261 40768443 -78976455 + L1PA3 LINE L1 3722 5907 -248 2219 130 0 0 chr13 40768998 40769305 -78975593 + AluSx SINE Alu 1 307 -5 2212 120 0 0 chr13 40769654 40769954 -78974944 + AluSx SINE Alu 1 300 -12 27 0 0 0 chr13 40770055 40770082 -78974816 + AT_rich Low_complexity Low_complexity 1 27 0 325 267 53 107 chr13 40770093 40770192 -78974706 - MIR SINE MIR -59 203 119 824 239 183 56 chr13 40770192 40770585 -78974313 - MLT1J1 LTR MaLR 0 446 4 325 267 53 107 chr13 40770585 40770691 -78974207 - MIR SINE MIR -143 119 9 1209 170 24 10 chr13 40770810 40771016 -78973882 + MER6B DNA MER2_type 1 209 -1 188 254 64 36 chr13 40771232 40771342 -78973556 + L2 LINE L2 2888 3000 -313 655 248 55 30 chr13 40771375 40771577 -78973321 + L2 LINE L2 3107 3313 0 24 53 0 0 chr13 40771703 40771741 -78973157 + AT_rich Low_complexity Low_complexity 1 38 0 267 340 0 20 chr13 40772318 40772418 -78972480 + GA-rich Low_complexity Low_complexity 6 103 0 363 161 0 0 chr13 40773091 40773153 -78971745 - AluJo SINE Alu 0 302 241 810 208 22 44 chr13 40773153 40773336 -78971562 - AluJo SINE Alu -133 179 1 1193 171 49 53 chr13 40774040 40774303 -78970595 + MER58B DNA MER1_type 2 263 -78 1238 183 77 31 chr13 40774315 40774638 -78970260 - L1MA9 LINE L1 -9 6303 5966 498 231 0 0 chr13 40774640 40774731 -78970167 + MER58B DNA MER1_type 251 341 0 348 198 198 0 chr13 40774958 40775054 -78969844 + MER112 DNA MER1_type 141 255 -5 2162 91 3 11 chr13 40775285 40775570 -78969328 + AluSc SINE Alu 1 283 -26 330 255 0 47 chr13 40775570 40775666 -78969232 + L1MC4 LINE L1 6611 6703 -1339 363 212 0 0 chr13 40775705 40775851 -78969047 + (TA)n Simple_repeat Simple_repeat 1 146 0 818 32 0 0 chr13 40775870 40775965 -78968933 - L1PA8 LINE L1 -3 6169 6075 637 214 16 24 chr13 40776011 40776137 -78968761 - FLAM_C SINE Alu -5 138 14 283 82 41 41 chr13 40776947 40776996 -78967902 + MER116 DNA Mariner 1 49 -31 2469 73 6 19 chr13 40777051 40777368 -78967530 + AluSp SINE Alu 1 313 0 231 36 0 0 chr13 40778130 40778158 -78966740 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 826 175 30 48 chr13 40778160 40778326 -78966572 - AluJo SINE Alu -30 282 120 1918 120 0 0 chr13 40778658 40778925 -78965973 - AluSx SINE Alu -45 267 1 253 89 0 54 chr13 40779811 40779867 -78965031 + (CCCCG)n Simple_repeat Simple_repeat 5 57 0 281 310 0 41 chr13 40779873 40780044 -78964854 + C-rich Low_complexity Low_complexity 2 165 0 532 296 91 0 chr13 40780344 40780530 -78964368 - L1ME1 LINE L1 -5 6161 5959 362 159 79 0 chr13 40780535 40780598 -78964300 - L1ME LINE L1 -641 5521 5454 1890 110 10 53 chr13 40780703 40781004 -78963894 + MER1B DNA MER1_type 52 339 0 1504 160 12 8 chr13 40781321 40781571 -78963327 - AluJo SINE Alu -53 259 9 25 31 0 0 chr13 40781581 40781613 -78963285 + AT_rich Low_complexity Low_complexity 1 32 0 364 248 30 53 chr13 40782240 40782373 -78962525 + MLT1G LTR MaLR 9 138 -457 294 95 0 0 chr13 40782373 40782415 -78962483 + (T)n Simple_repeat Simple_repeat 1 42 0 459 220 52 181 chr13 40782415 40782713 -78962185 + MLT1G LTR MaLR 100 402 -193 1035 277 82 64 chr13 40782714 40783739 -78961159 + L1MEd LINE L1 596 1750 -740 464 260 78 50 chr13 40784191 40784433 -78960465 + MLT1J LTR MaLR 3 251 -260 314 253 75 48 chr13 40784637 40784783 -78960115 + L1MEd LINE L1 2126 2275 -3854 1854 166 67 9 chr13 40784859 40785202 -78959696 - MLT1A1 LTR MaLR 0 365 3 434 296 50 13 chr13 40785237 40785396 -78959502 + MIR SINE MIR 48 212 -50 849 329 124 41 chr13 40785440 40786531 -78958367 - L2 LINE L2 0 3272 1976 1564 152 53 14 chr13 40786531 40786814 -78958084 + AluJo SINE Alu 1 294 -18 849 329 124 41 chr13 40786814 40786962 -78957936 - L2 LINE L2 -1296 1976 1842 21 0 0 0 chr13 40787717 40787738 -78957160 + GC_rich Low_complexity Low_complexity 1 21 0 301 281 6 34 chr13 40787951 40788129 -78956769 + G-rich Low_complexity Low_complexity 2 174 0 264 223 125 54 chr13 40789323 40789435 -78955463 - L2 LINE L2 -1 3312 3193 242 304 0 14 chr13 40789808 40789877 -78955021 - Charlie4 DNA MER1_type -2 1959 1892 231 229 16 16 chr13 40789900 40789961 -78954937 + (TATG)n Simple_repeat Simple_repeat 3 63 0 1395 158 89 4 chr13 40790093 40790352 -78954546 - AluJo SINE Alu -10 302 22 1518 149 0 78 chr13 40790590 40790899 -78953999 - AluJo SINE Alu -27 285 1 2177 93 37 0 chr13 40791030 40791330 -78953568 - AluY SINE Alu 0 311 1 1356 171 6 73 chr13 40791756 40792071 -78952827 + AluJo SINE Alu 6 299 -13 477 139 0 38 chr13 40795096 40795175 -78949723 + AluS SINE Alu 225 300 -11 288 102 0 0 chr13 40795188 40795237 -78949661 + (TTG)n Simple_repeat Simple_repeat 3 51 0 1674 172 18 0 chr13 40795242 40795521 -78949377 - AluSx SINE Alu -28 284 1 331 204 43 75 chr13 40795847 40795940 -78948958 - MLT1K LTR MaLR -15 573 484 1051 287 111 28 chr13 40795987 40796349 -78948549 - MLT1K LTR MaLR -187 401 10 288 77 0 0 chr13 40796829 40796868 -78948030 + (TG)n Simple_repeat Simple_repeat 1 39 0 2519 146 28 2 chr13 40796959 40797385 -78947513 + L1MC3 LINE L1 7342 7778 -7 301 265 39 10 chr13 40797395 40797497 -78947401 - L1ME4a LINE L1 -76 6045 5941 347 200 14 0 chr13 40797586 40797656 -78947242 + MER58 DNA MER1_type 167 237 -104 13529 138 13 10 chr13 40797681 40798990 -78945908 - L1MA2 LINE L1 0 6304 5000 2196 110 0 16 chr13 40798990 40799298 -78945600 - AluSx SINE Alu -9 303 1 13529 138 13 10 chr13 40799298 40801303 -78943595 - L1MA2 LINE L1 -1304 5000 2983 21 0 0 0 chr13 40801760 40801781 -78943117 + AT_rich Low_complexity Low_complexity 1 21 0 486 0 0 0 chr13 40803529 40803583 -78941315 + (TG)n Simple_repeat Simple_repeat 2 55 0 370 321 58 32 chr13 40803583 40803773 -78941125 + MIR SINE MIR 19 213 -49 237 303 126 42 chr13 40803970 40804089 -78940809 + MIR3 SINE MIR 34 162 -46 1507 130 174 105 chr13 40804183 40804484 -78940414 + MSTB LTR MaLR 9 345 -81 9215 26 5 1 chr13 40804484 40806266 -78938632 + L1PA2 LINE L1 4369 6153 -2 1507 130 174 105 chr13 40806266 40806355 -78938543 + MSTB LTR MaLR 345 426 0 288 241 57 49 chr13 40806653 40806760 -78938138 + L1M4 LINE L1 5539 5647 -485 2448 223 74 60 chr13 40807015 40807235 -78937663 + L1MC5 LINE L1 6966 7181 -780 2273 236 73 21 chr13 40807235 40807799 -78937099 + MLT1E LTR MaLR 1 593 0 2448 223 74 60 chr13 40807799 40808509 -78936389 + L1MC5 LINE L1 7181 7909 -52 2509 138 131 17 chr13 40809370 40809962 -78934936 - LTR12 LTR ERV1 -226 2212 1 564 232 7 7 chr13 40810654 40810792 -78934106 + L1ME3A LINE L1 6020 6157 -13 289 139 0 0 chr13 40811007 40811050 -78933848 - L1MA8 LINE L1 -205 6086 6044 2453 143 34 5 chr13 40811175 40811554 -78933344 + MLT1B LTR MaLR 1 390 0 956 184 63 29 chr13 40811792 40811999 -78932899 - MER20 DNA MER1_type 0 219 6 1374 193 71 7 chr13 40813893 40814173 -78930725 + AluJo SINE Alu 1 298 -14 223 246 0 46 chr13 40814182 40814247 -78930651 + GA-rich Low_complexity Low_complexity 1 62 0 362 251 178 52 chr13 40814739 40814930 -78929968 - MLT1J LTR MaLR -267 244 30 204 267 0 0 chr13 40815760 40815805 -78929093 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1148 185 79 114 chr13 40816431 40816809 -78928089 + MLT1A1 LTR MaLR 1 365 0 226 273 0 0 chr13 40816896 40816951 -78927947 + L2 LINE L2 3246 3300 -13 1551 178 7 21 chr13 40817572 40817859 -78927039 + AluSx SINE Alu 28 310 -2 749 11 11 0 chr13 40818018 40818108 -78926790 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1803 168 26 16 chr13 40819265 40819574 -78925324 + AluJo SINE Alu 1 312 0 751 143 77 50 chr13 40819602 40819784 -78925114 - MER5A DNA MER1_type 0 189 3 207 69 0 0 chr13 40820050 40820079 -78924819 + (A)n Simple_repeat Simple_repeat 1 29 0 374 253 68 56 chr13 40820436 40820598 -78924300 - MER5B DNA MER1_type -14 164 1 242 296 200 9 chr13 40820791 40820906 -78923992 - MIR SINE MIR -106 156 20 23 0 0 29 chr13 40823018 40823029 -78921869 + AT_rich Low_complexity Low_complexity 1 11 -22 1919 138 3 14 chr13 40823029 40823326 -78921572 + AluSx SINE Alu 1 294 -18 23 0 0 29 chr13 40823326 40823348 -78921550 + AT_rich Low_complexity Low_complexity 11 33 0 442 327 108 23 chr13 40823821 40824127 -78920771 + L2 LINE L2 2494 2825 -489 2386 222 66 85 chr13 40824132 40824368 -78920530 + MER21B LTR ERV1 1 240 -623 2112 131 40 37 chr13 40824368 40824742 -78920156 - THE1C LTR MaLR 0 375 1 2386 222 66 85 chr13 40824742 40825320 -78919578 + MER21B LTR ERV1 240 800 -63 370 323 92 51 chr13 40827233 40827549 -78917349 - L2 LINE L2 -15 3257 2929 252 86 0 0 chr13 40827549 40827584 -78917314 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 716 245 126 39 chr13 40830000 40830310 -78914588 + MLT1J LTR MaLR 3 339 -172 261 263 72 26 chr13 40831219 40831371 -78913527 - Charlie7 DNA MER1_type -3 2609 2451 480 284 111 20 chr13 40833431 40833700 -78911198 - L1 LINE L1 -1818 4328 4034 283 202 48 0 chr13 40833827 40833911 -78910987 - L1 LINE L1 -2196 3950 3863 1651 169 6 32 chr13 40833973 40834287 -78910611 - AluJb SINE Alu -6 306 1 465 203 32 96 chr13 40834820 40835007 -78909891 + MER104 DNA MER2_type 3 177 -3 180 324 28 83 chr13 40835575 40835720 -78909178 + L2 LINE L2 1399 1535 -1779 449 266 135 73 chr13 40835925 40836324 -78908574 + MLT1L LTR MaLR 191 614 -1 216 97 0 0 chr13 40836341 40836372 -78908526 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chr13 40836490 40836514 -78908384 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3594 98 6 2 chr13 40836514 40836995 -78907903 - L1PB2 LINE L1 -3 6148 5666 182 269 58 19 chr13 40837039 40837091 -78907807 - L2 LINE L2 -19 3294 3241 181 247 72 21 chr13 40838471 40838568 -78906330 - L2 LINE L2 -224 3048 2947 181 309 0 0 chr13 40838747 40838789 -78906109 + L2 LINE L2 3209 3250 -22 405 0 0 0 chr13 40838931 40838976 -78905922 + (CA)n Simple_repeat Simple_repeat 2 46 0 2072 100 4 11 chr13 40838988 40839293 -78905605 + AluSx SINE Alu 7 309 0 3210 120 52 19 chr13 40839587 40840127 -78904771 - MER34B LTR ERV1 -7 558 1 1957 139 0 17 chr13 40840356 40840670 -78904228 - AluSx SINE Alu 0 309 1 204 125 0 0 chr13 40841201 40841233 -78903665 + (CA)n Simple_repeat Simple_repeat 2 33 0 295 21 0 21 chr13 40841500 40841548 -78903350 + AluSp/q SINE Alu 257 303 0 555 239 31 44 chr13 40842233 40842392 -78902506 + MLT1C LTR MaLR 23 179 -326 * 1056 93 21 0 chr13 40842390 40842530 -78902368 - MER50 LTR ERV1 -23 711 569 1376 49 55 11 chr13 40842530 40842713 -78902185 + AluYa5 SINE Alu 105 295 -16 1181 147 21 11 chr13 40842713 40842903 -78901995 - MER50 LTR ERV1 -161 573 382 2047 164 40 5 chr13 40843192 40843565 -78901333 - MER50 LTR ERV1 -348 386 1 903 211 107 25 chr13 40843566 40843586 -78901312 + MLT1C LTR MaLR 165 182 -285 2025 137 3 13 chr13 40843586 40843899 -78900999 + AluSx SINE Alu 1 310 -2 903 211 107 25 chr13 40843899 40844158 -78900740 + MLT1C LTR MaLR 182 467 0 2333 165 40 2 chr13 40844932 40845337 -78899561 + MLT2B1 LTR ERVL 3 422 -98 417 39 0 0 chr13 40845967 40846018 -78898880 + (TG)n Simple_repeat Simple_repeat 2 52 0 1078 187 61 108 chr13 40846365 40846760 -78898138 + MLT1C LTR MaLR 103 467 0 2188 121 0 3 chr13 40848817 40849122 -78895776 - AluSg SINE Alu -6 304 1 362 329 104 33 chr13 40849364 40849604 -78895294 + L2 LINE L2 3016 3272 0 3961 134 31 5 chr13 40849639 40850227 -78894671 + LTR26 LTR ERV1 1 603 0 343 111 0 19 chr13 40850789 40850843 -78894055 - L1PA2 LINE L1 -5 6150 6098 259 294 44 114 chr13 40852832 40853175 -78891723 - L2 LINE L2 -37 3235 2917 2278 103 3 3 chr13 40854084 40854394 -78890504 + AluSg SINE Alu 1 310 0 587 252 86 43 chr13 40856824 40857058 -78887840 - MIR SINE MIR 0 262 19 288 346 85 13 chr13 40857183 40857336 -78887562 + MIR SINE MIR 21 184 -78 23 0 0 0 chr13 40858428 40858451 -78886447 + AT_rich Low_complexity Low_complexity 1 23 0 350 231 67 10 chr13 40859195 40859299 -78885599 + MIR SINE MIR 122 231 -31 1829 139 3 21 chr13 40859323 40859611 -78885287 + AluSx SINE Alu 28 310 -2 5007 126 14 28 chr13 40859794 40860603 -78884295 - L1PA16 LINE L1 -47 6119 5323 5485 63 16 3 chr13 40860603 40861271 -78883627 - L1PA7 LINE L1 -6 6148 5472 13687 94 1 1 chr13 40861271 40863146 -78881752 - L1PA7 LINE L1 -1308 4838 2963 942 27 18 0 chr13 40863186 40863296 -78881602 + L1PA4 LINE L1 6044 6155 0 530 194 10 0 chr13 40863298 40863396 -78881502 - HAL1 LINE L1 -866 1641 1543 360 289 52 21 chr13 40863869 40864045 -78880853 - MLT1H LTR MaLR -199 210 68 198 0 0 0 chr13 40864271 40864293 -78880605 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 850 96 45 39 chr13 40864431 40864587 -78880311 + L1PA6 LINE L1 5996 6152 -2 23 0 0 0 chr13 40864587 40864610 -78880288 + AT_rich Low_complexity Low_complexity 1 23 0 210 247 216 21 chr13 40864704 40864801 -78880097 + MIR SINE MIR 31 146 -116 264 248 20 20 chr13 40865533 40865634 -78879264 + CT-rich Low_complexity Low_complexity 3 103 0 21 0 0 0 chr13 40865645 40865666 -78879232 + AT_rich Low_complexity Low_complexity 1 21 0 1516 209 0 22 chr13 40867553 40867864 -78877034 + AluJo SINE Alu 5 308 -4 203 293 53 0 chr13 40867973 40868048 -78876850 - MIR SINE MIR -26 236 158 * 257 303 40 0 chr13 40868047 40868123 -78876775 + L2 LINE L2 2930 3008 -264 245 278 0 14 chr13 40868433 40868505 -78876393 + CT-rich Low_complexity Low_complexity 2 72 0 266 267 17 0 chr13 40868508 40868568 -78876330 + MIR SINE MIR 1 61 -201 2270 108 0 0 chr13 40869310 40869605 -78875293 + AluSx SINE Alu 1 295 -17 295 255 107 41 chr13 40871285 40871348 -78873550 - L1ME4a LINE L1 -2 6119 6062 2085 138 0 0 chr13 40871348 40871644 -78873254 + AluSq SINE Alu 1 296 -17 295 255 107 41 chr13 40871644 40871851 -78873047 - L1ME4a LINE L1 -59 6062 5831 12050 98 12 28 chr13 40871944 40873918 -78870980 + L1P3 LINE L1 2 1980 -4481 11550 226 24 4 chr13 40873920 40877167 -78867731 - L1PA15-16 LINE L1 -814 6035 2719 2235 124 47 11 chr13 40877167 40877529 -78867369 - THE1C LTR MaLR 0 375 1 1008 91 19 0 chr13 40877529 40877683 -78867215 - THE1C-int LTR MaLR 0 1580 1424 * 1350 216 22 9 chr13 40877675 40877990 -78866908 - L1P LINE L1 -2305 3841 3523 8395 126 9 54 chr13 40878007 40879497 -78865401 - THE1C-int LTR MaLR -157 1423 1 1909 149 68 11 chr13 40879497 40879852 -78865046 - THE1C LTR MaLR 0 375 1 346 102 0 0 chr13 40879852 40879901 -78864997 - L1PA15-16 LINE L1 -4126 2723 2675 331 70 0 0 chr13 40879901 40879944 -78864954 - HY3 scRNA scRNA -58 43 1 3546 129 17 5 chr13 40879945 40880535 -78864363 - L1PA15-16 LINE L1 -4164 2685 2089 711 300 64 9 chr13 40881687 40881920 -78862978 - MIR SINE MIR 0 262 17 452 289 30 15 chr13 40881912 40882047 -78862851 - MIR SINE MIR -79 183 47 * 425 247 230 25 chr13 40882858 40883055 -78861843 + MIR SINE MIR 3 242 -20 325 284 9 9 chr13 40883182 40883298 -78861600 - MARNA DNA Mariner -196 390 275 271 264 28 0 chr13 40883774 40883846 -78861052 + MIR SINE MIR 63 136 -126 517 212 61 0 chr13 40883958 40884090 -78860808 + MER69 DNA AcHobo 1 140 -1086 1857 154 9 31 chr13 40884118 40884436 -78860462 - AluJo SINE Alu -1 311 1 2680 32 3 0 chr13 40884444 40884754 -78860144 - AluY SINE Alu 0 311 1 366 182 0 0 chr13 40884754 40884820 -78860078 + MER69 DNA AcHobo 2458 2523 -3 207 0 0 0 chr13 40884985 40885008 -78859890 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 387 0 0 0 chr13 40885808 40885851 -78859047 + (CA)n Simple_repeat Simple_repeat 2 44 0 407 292 42 8 chr13 40886144 40886264 -78858634 - L2 LINE L2 -3 3269 3146 1043 221 56 39 chr13 40886505 40886900 -78857998 - MLT1E2 LTR MaLR -4 622 117 3787 116 68 11 chr13 40887120 40887777 -78857121 + L1MB2 LINE L1 5446 6140 -31 2198 217 46 79 chr13 40887175 40888040 -78856858 + L1MC1 LINE L1 5497 6333 0 * 211 274 36 48 chr13 40888234 40888318 -78856580 + MIR3 SINE MIR 125 207 -1 1282 251 52 6 chr13 40888537 40889020 -78855878 + L1MB2 LINE L1 2735 3239 -2907 * 4965 167 21 3 chr13 40889009 40890260 -78854638 + L1MB2 LINE L1 4894 6170 -1 194 358 8 50 chr13 40890651 40890771 -78854127 + L2 LINE L2 308 422 -2892 234 91 0 0 chr13 40890794 40890827 -78854071 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 523 132 0 0 chr13 40891123 40891214 -78853684 + L1MA5 LINE L1 6210 6300 0 616 277 0 0 chr13 40891281 40891440 -78853458 + L1MD2 LINE L1 5993 6151 -208 838 159 23 0 chr13 40891443 40891575 -78853323 - FRAM SINE Alu -31 145 11 3554 180 74 3 chr13 40891650 40891991 -78852907 - Charlie1a DNA MER1_type -1540 1221 906 2201 146 28 25 chr13 40891991 40892354 -78852544 - THE1B LTR MaLR 0 364 1 3554 180 74 3 chr13 40892354 40892768 -78852130 - Charlie1a DNA MER1_type -1855 906 412 389 266 0 0 chr13 40892877 40892971 -78851927 - Charlie1a DNA MER1_type -1207 248 155 277 177 16 0 chr13 40893692 40893754 -78851144 - Charlie1a DNA MER1_type -1317 138 76 1570 199 44 18 chr13 40894712 40895098 -78849800 - L1MC2 LINE L1 -2 6342 5947 * 1679 253 10 69 chr13 40895091 40895811 -78849087 - L1M4 LINE L1 -2267 3879 3203 586 158 55 0 chr13 40895823 40895950 -78848948 + L1MC3 LINE L1 7645 7778 -7 590 350 38 25 chr13 40896184 40896550 -78848348 + L1MC/D LINE L1 2788 3158 -2988 306 308 63 86 chr13 40896897 40897280 -78847618 + L1MC/D LINE L1 3617 3990 -2156 243 0 0 0 chr13 40897298 40897325 -78847573 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 345 24 0 0 chr13 40897324 40897366 -78847532 + (TG)n Simple_repeat Simple_repeat 1 42 0 301 263 131 15 chr13 40897409 40897546 -78847352 + L1MC/D LINE L1 4071 4223 -1923 1313 254 107 67 chr13 40898070 40898638 -78846260 - MLT2E LTR ERVL 0 628 38 345 309 135 62 chr13 40898731 40899278 -78845620 + L1MC/D LINE L1 4451 5037 -1109 405 86 0 0 chr13 40899339 40899397 -78845501 + (TC)n Simple_repeat Simple_repeat 1 58 0 358 330 97 26 chr13 40899559 40899786 -78845112 + L1MC/D LINE L1 5502 5744 -2064 2360 108 0 3 chr13 40900257 40900563 -78844335 + AluSg SINE Alu 1 305 -5 180 269 54 108 chr13 40901242 40901312 -78843586 - MIR SINE MIR -10 252 180 2094 107 4 0 chr13 40901312 40901582 -78843316 + AluSx SINE Alu 38 308 -4 180 269 54 108 chr13 40901582 40901697 -78843201 - MIR SINE MIR -82 180 77 183 208 19 38 chr13 40901889 40901942 -78842956 - L2 LINE L2 -4 3268 3217 236 232 81 40 chr13 40902892 40902991 -78841907 - L2 LINE L2 -1 3271 3169 745 240 161 0 chr13 40903011 40903228 -78841670 - MIR SINE MIR 0 262 11 715 202 0 0 chr13 40903737 40903905 -78840993 - L1P LINE L1 -3240 2906 2739 359 309 116 10 chr13 40903915 40904122 -78840776 - MLT1H LTR MaLR -250 299 71 309 293 50 21 chr13 40904466 40904606 -78840292 - L1M4 LINE L1 -2323 3823 3680 561 301 71 61 chr13 40904611 40905027 -78839871 - HAL1 LINE L1 -1002 1505 1143 1738 191 13 3 chr13 40905027 40905336 -78839562 - AluJo SINE Alu 0 312 1 561 301 71 61 chr13 40905336 40905520 -78839378 - HAL1 LINE L1 -1364 1143 962 1793 158 83 4 chr13 40905985 40906399 -78838499 - MLT1D LTR MaLR -10 495 1 203 296 69 89 chr13 40906772 40906975 -78837923 - L2 LINE L2 -34 3238 3040 208 208 42 0 chr13 40907141 40907189 -78837709 + CT-rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr13 40908761 40908782 -78836116 + AT_rich Low_complexity Low_complexity 1 21 0 225 304 108 49 chr13 40908796 40908898 -78836000 + L2 LINE L2 3149 3256 -16 522 221 33 33 chr13 40908912 40909034 -78835864 - L2 LINE L2 0 3313 3192 2670 134 13 18 chr13 40909093 40909549 -78835349 + L1MA8 LINE L1 5334 5787 -504 22 0 0 0 chr13 40909685 40909707 -78835191 + AT_rich Low_complexity Low_complexity 1 22 0 2853 128 21 21 chr13 40909723 40910193 -78834705 + L1MA8 LINE L1 5769 6241 -50 2095 110 7 17 chr13 40910193 40910493 -78834405 + AluSq SINE Alu 1 297 -16 2853 128 21 21 chr13 40910493 40910544 -78834354 + L1MA8 LINE L1 6240 6290 -1 457 255 28 49 chr13 40910858 40911105 -78833793 - MLT1K LTR MaLR -28 560 319 267 326 50 32 chr13 40911294 40911512 -78833386 - MLT1K LTR MaLR -252 336 115 235 206 0 96 chr13 40911594 40911667 -78833231 - Charlie5 DNA MER1_type -2537 75 10 2203 178 44 36 chr13 40911749 40912250 -78832648 - MLT1D LTR MaLR 0 505 1 1189 316 125 28 chr13 40912260 40913225 -78831673 - L2 LINE L2 -337 2977 1919 429 283 31 50 chr13 40913336 40913495 -78831403 + MIR SINE MIR 2 157 -105 292 346 83 28 chr13 40913695 40913912 -78830986 - L2 LINE L2 0 3272 3044 389 285 164 6 chr13 40914030 40914195 -78830703 - MIR3 SINE MIR -6 202 12 3683 146 8 0 chr13 40914615 40915216 -78829682 + L1PA16 LINE L1 5556 6161 -5 244 313 104 10 chr13 40916764 40916956 -78827942 + L1MC/D LINE L1 5697 5906 -1902 210 340 10 0 chr13 40916956 40917053 -78827845 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 702 274 63 30 chr13 40917271 40917508 -78827390 - MIR SINE MIR 0 262 18 2205 125 0 0 chr13 40920342 40920654 -78824244 - AluSx SINE Alu 0 312 1 1252 132 37 25 chr13 40921412 40921655 -78823243 - L1MA8 LINE L1 -3 6288 6043 2002 147 221 116 chr13 40921882 40922143 -78822755 + L1MC3 LINE L1 6816 7048 -737 237 256 35 12 chr13 40922143 40922229 -78822669 + MLT1F1 LTR MaLR 37 124 -443 2002 147 221 116 chr13 40922229 40922656 -78822242 + L1MC3 LINE L1 7048 7670 -115 400 186 35 0 chr13 40922666 40922752 -78822146 - L1MC3 LINE L1 -33 7752 7664 307 169 0 0 chr13 40922800 40922859 -78822039 + L1MC3 LINE L1 6995 7053 -732 668 142 47 0 chr13 40923031 40923158 -78821740 + L1MC3 LINE L1 7653 7785 0 205 266 64 85 chr13 40923162 40923256 -78821642 - MER5A DNA MER1_type -58 131 29 270 56 0 0 chr13 40924175 40924211 -78820687 + (TG)n Simple_repeat Simple_repeat 2 37 0 1066 173 70 38 chr13 40925724 40926037 -78818861 - MER33 DNA MER1_type 0 324 2 1919 185 56 23 chr13 40926114 40926594 -78818304 - MLT1D LTR MaLR -9 496 1 476 320 31 15 chr13 40927340 40927528 -78817370 - MIR3 SINE MIR -1 207 16 578 236 181 23 chr13 40927578 40927837 -78817061 - L2 LINE L2 0 3313 3014 186 43 0 0 chr13 40929302 40929325 -78815573 + (T)n Simple_repeat Simple_repeat 1 23 0 2191 119 6 19 chr13 40929371 40929682 -78815216 - AluSx SINE Alu -5 307 1 349 277 72 100 chr13 40929798 40930047 -78814851 - L1ME3A LINE L1 -3 6167 5926 491 264 98 37 chr13 40930124 40930450 -78814448 - L1ME LINE L1 -4864 1255 910 2353 108 0 0 chr13 40930452 40930757 -78814141 + AluSq SINE Alu 1 305 -8 1593 134 6 111 chr13 40930757 40931062 -78813836 + MLT2D LTR ERVL 102 367 -47 369 0 0 0 chr13 40931062 40931103 -78813795 + (CA)n Simple_repeat Simple_repeat 2 42 0 1593 134 6 111 chr13 40931103 40931147 -78813751 + MLT2D LTR ERVL 367 414 0 262 281 48 5 chr13 40931279 40931410 -78813488 - L1ME LINE L1 -5958 161 20 2902 64 11 5 chr13 40932570 40932943 -78811955 + THE1C LTR MaLR 1 375 0 299 261 119 40 chr13 40933000 40933165 -78811733 + MIR SINE MIR 2 191 -67 305 280 100 14 chr13 40933324 40933573 -78811325 - L1MDa LINE L1 -4621 1761 1551 250 235 153 20 chr13 40933667 40933765 -78811133 - L1ME3A LINE L1 -94 6076 5966 22 0 0 0 chr13 40934079 40934101 -78810797 + AT_rich Low_complexity Low_complexity 1 22 0 2142 106 0 3 chr13 40934163 40934456 -78810442 + AluSq SINE Alu 6 297 -16 350 323 101 0 chr13 40934749 40934907 -78809991 + L1MEd LINE L1 478 651 -5468 183 339 0 16 chr13 40934912 40934974 -78809924 - MIR SINE MIR -198 64 4 769 350 81 16 chr13 40935016 40935521 -78809377 - L3 LINE CR1 -30 1547 1010 198 242 111 92 chr13 40935626 40935779 -78809119 + L2 LINE L2 2869 3024 -248 522 180 18 9 chr13 40935872 40935983 -78808915 + MER6 DNA MER2_type 33 865 0 184 348 22 45 chr13 40936001 40936090 -78808808 + L2 LINE L2 3134 3220 -52 2306 136 67 0 chr13 40936952 40937343 -78807555 + MSTA LTR MaLR 1 417 -11 289 279 260 9 chr13 40937365 40937584 -78807314 - L3 LINE CR1 -987 590 317 561 263 89 41 chr13 40937786 40938079 -78806819 - MER102b DNA MER1_type -13 328 22 1171 159 87 35 chr13 40938738 40939027 -78805871 + L1MC1 LINE L1 6029 6332 -1 213 195 0 0 chr13 40942076 40942117 -78802781 + (CA)n Simple_repeat Simple_repeat 2 42 0 346 272 18 9 chr13 40942123 40942237 -78802661 + GA-rich Low_complexity Low_complexity 6 120 0 210 37 0 0 chr13 40942406 40942433 -78802465 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 396 0 0 0 chr13 40942748 40942792 -78802106 + (CA)n Simple_repeat Simple_repeat 2 45 0 195 42 0 0 chr13 40944117 40944141 -78800757 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 633 133 91 14 chr13 40944295 40944438 -78800460 - L1MB7 LINE L1 0 6184 6031 577 297 54 18 chr13 40944700 40944922 -78799976 - MIR SINE MIR -18 244 15 1851 148 19 13 chr13 40945521 40945831 -78799067 + AluSx SINE Alu 1 312 0 947 240 86 1 chr13 40945851 40946086 -78798812 - MIR SINE MIR -9 253 10 24 0 0 0 chr13 40946823 40946847 -78798051 + AT_rich Low_complexity Low_complexity 1 24 0 2191 127 0 7 chr13 40948228 40948536 -78796362 - AluSx SINE Alu -6 306 1 21 0 0 0 chr13 40948834 40948855 -78796043 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 40949169 40949190 -78795708 + AT_rich Low_complexity Low_complexity 1 21 0 363 244 101 8 chr13 40951219 40951338 -78793560 + MER94 DNA DNA 4 133 -1 2179 99 7 20 chr13 40951826 40952128 -78792770 - AluSx SINE Alu -14 298 1 397 326 7 14 chr13 40952234 40952381 -78792517 + MER5A DNA MER1_type 7 152 -37 558 288 191 50 chr13 40952432 40952894 -78792004 - L3 LINE CR1 -616 961 435 23 68 0 0 chr13 40953987 40954031 -78790867 + AT_rich Low_complexity Low_complexity 1 44 0 713 270 85 86 chr13 40954817 40955438 -78789460 + L2 LINE L2 2653 3270 -43 880 183 0 0 chr13 40955713 40955855 -78789043 + FLAM_C SINE Alu 1 142 -1 1480 188 42 27 chr13 40956569 40956602 -78788296 - MER58B DNA MER1_type -2079 341 310 1858 125 81 36 chr13 40956602 40956961 -78787937 + THE1C LTR MaLR 1 375 0 1480 188 42 27 chr13 40956961 40957263 -78787635 - MER58B DNA MER1_type -2110 310 1 2343 97 0 0 chr13 40957648 40957946 -78786952 + AluSx SINE Alu 1 298 -14 547 191 0 0 chr13 40958193 40958287 -78786611 - Tigger7 DNA MER2_type -1 2486 2393 * 1051 211 155 4 chr13 40958264 40958515 -78786383 - Tigger7 DNA MER2_type -443 290 2 216 301 87 19 chr13 40958545 40958648 -78786250 + MIR SINE MIR 62 171 -91 27 62 0 0 chr13 40965802 40965850 -78779048 + AT_rich Low_complexity Low_complexity 1 48 0 573 261 48 0 chr13 40967423 40967588 -78777310 + L2 LINE L2 2879 3051 -262 308 225 150 53 chr13 40967697 40967884 -78777014 + L1ME4a LINE L1 5825 6029 -92 2230 119 10 3 chr13 40967998 40968300 -78776598 + AluSx SINE Alu 1 304 -8 339 230 163 7 chr13 40968659 40968794 -78776104 + MIR SINE MIR 92 247 -15 304 200 0 0 chr13 40969338 40969393 -78775505 + Tigger5 DNA MER2_type 1 55 -2268 413 221 0 0 chr13 40969402 40969488 -78775410 + Tigger5 DNA MER2_type 2237 2322 -1 2088 115 21 0 chr13 40971152 40971440 -78773458 + AluSx SINE Alu 1 294 -18 258 274 74 8 chr13 40971646 40972628 -78772270 + L1MD3 LINE L1 6546 7777 -218 234 213 0 75 chr13 40972760 40972840 -78772058 + L1MC4 LINE L1 7957 8030 -12 538 266 61 76 chr13 40972983 40973325 -78771573 + L1MC4 LINE L1 6762 7098 -944 953 265 74 70 chr13 40973366 40974410 -78770488 + L1MC4 LINE L1 7006 8041 -1 2357 78 0 3 chr13 40975115 40975409 -78769489 + AluY SINE Alu 1 293 -18 195 333 121 0 chr13 40975577 40975709 -78769189 - L2 LINE L2 -1218 2096 1949 232 273 91 11 chr13 40975902 40975990 -78768908 + L2 LINE L2 3219 3313 0 204 97 0 0 chr13 40976491 40976522 -78768376 + (TAAAAA)n Simple_repeat Simple_repeat 3 33 0 217 268 18 36 chr13 40977147 40977203 -78767695 - L2 LINE L2 -50 3222 3168 771 208 0 0 chr13 40977356 40977486 -78767412 + FLAM_A SINE Alu 1 130 -3 283 311 88 20 chr13 40977909 40978057 -78766841 + MIR SINE MIR 59 216 -46 260 272 76 0 chr13 40978362 40978454 -78766444 + L1ME4a LINE L1 5565 5663 -458 506 318 71 38 chr13 40978471 40978710 -78766188 - MIR SINE MIR -14 248 2 356 272 233 17 chr13 40980151 40980438 -78764460 + L1MC4a LINE L1 5598 5946 -1862 1827 139 77 0 chr13 40980442 40980729 -78764169 + AluSx SINE Alu 1 309 -3 395 285 91 29 chr13 40980883 40981125 -78763773 + L1ME4a LINE L1 5861 6117 -4 202 272 132 52 chr13 40981283 40981419 -78763479 - MER5A DNA MER1_type 0 189 43 211 312 148 52 chr13 40981504 40981982 -78762916 + L2 LINE L2 2135 2658 -656 508 246 199 9 chr13 40982409 40982620 -78762278 + L1MEc LINE L1 100 350 -6046 2184 259 70 53 chr13 40982757 40983381 -78761517 + L1MEc LINE L1 608 1220 -5176 198 118 0 0 chr13 40983381 40983415 -78761483 + (TGAG)n Simple_repeat Simple_repeat 3 36 0 2184 259 70 53 chr13 40983415 40984280 -78760618 + L1MEc LINE L1 1220 2123 -4273 1048 177 52 5 chr13 40984539 40984731 -78760167 - MER20 DNA MER1_type 0 219 19 1762 157 3 7 chr13 40986152 40986439 -78758459 + AluJb SINE Alu 1 286 -26 24 0 0 0 chr13 40986440 40986464 -78758434 + AT_rich Low_complexity Low_complexity 1 24 0 213 352 48 9 chr13 40986745 40986850 -78758048 + L2 LINE L2 3189 3297 -16 503 257 108 0 chr13 40986869 40987017 -78757881 - MIR SINE MIR -22 240 77 1904 156 3 7 chr13 40987995 40988297 -78756601 - AluSx SINE Alu -11 301 1 27 0 0 0 chr13 40988884 40988911 -78755987 + AT_rich Low_complexity Low_complexity 1 27 0 202 169 31 46 chr13 40990548 40990613 -78754285 + (CCCCG)n Simple_repeat Simple_repeat 5 68 0 198 0 0 0 chr13 40990625 40990647 -78754251 + (CCG)n Simple_repeat Simple_repeat 3 24 0 364 324 99 7 chr13 40991773 40991915 -78752983 - L2 LINE L2 -261 3052 2898 1385 140 88 6 chr13 40991960 40992380 -78752518 - LTR19A LTR ERV1 0 486 1 387 338 61 19 chr13 40992391 40992604 -78752294 - L2 LINE L2 -494 2820 2599 246 366 53 15 chr13 40992967 40993098 -78751800 + MIR3 SINE MIR 37 172 -36 1546 203 103 27 chr13 40993875 40994054 -78750844 - L1MB8 LINE L1 0 6178 6014 2240 47 27 23 chr13 40994054 40994353 -78750545 + L1PA6 LINE L1 5852 6151 -3 1546 203 103 27 chr13 40994353 40994647 -78750251 - L1MB8 LINE L1 -164 6014 5669 531 277 78 106 chr13 40994869 40995302 -78749596 + L2 LINE L2 2836 3256 -16 197 393 0 12 chr13 40995774 40995858 -78749040 - MIR SINE MIR -72 136 54 1426 173 100 4 chr13 40996311 40996582 -78748316 - AluJo SINE Alu -15 297 1 2864 133 31 0 chr13 40996782 40997235 -78747663 - LTR24 LTR ERV1 0 467 1 426 248 291 26 chr13 40998616 40998846 -78746052 + L3 LINE CR1 954 1244 -333 27 49 0 0 chr13 40999052 40999093 -78745805 + AT_rich Low_complexity Low_complexity 1 41 0 2802 114 20 20 chr13 41000771 41001157 -78743741 + MER83 LTR ERV1 1 389 -59 2128 125 45 31 chr13 41001157 41001516 -78743382 - THE1B LTR MaLR 0 364 1 2802 114 20 20 chr13 41001516 41001577 -78743321 + MER83 LTR ERV1 388 448 0 1777 114 34 9 chr13 41003507 41003842 -78741056 - MER61C LTR ERV1 0 434 1 29 0 0 0 chr13 41004083 41004112 -78740786 + AT_rich Low_complexity Low_complexity 1 29 0 2119 108 14 0 chr13 41004120 41004431 -78740467 + AluSx SINE Alu 1 315 0 418 338 102 9 chr13 41004852 41005175 -78739723 - L1MB8 LINE L1 -523 5647 5295 2472 218 95 13 chr13 41005190 41005937 -78738961 + L1ME1 LINE L1 5353 6160 -6 386 314 31 0 chr13 41005960 41006119 -78738779 - L1MB8 LINE L1 -856 5290 5127 408 304 24 19 chr13 41006863 41007070 -78737828 - L1MB8 LINE L1 -1036 5110 4903 21 57 0 0 chr13 41007383 41007418 -78737480 + AT_rich Low_complexity Low_complexity 1 35 0 523 154 107 0 chr13 41007564 41007713 -78737185 - MER33 DNA MER1_type -7 356 192 2147 112 7 16 chr13 41008049 41008353 -78736545 - AluSq SINE Alu -12 301 1 504 315 40 11 chr13 41008365 41008641 -78736257 - L1ME LINE L1 -303 5818 5535 646 181 110 0 chr13 41008735 41008890 -78736008 - MER33 DNA MER1_type -152 172 1 347 183 28 0 chr13 41009146 41009217 -78735681 - MLT1A1 LTR MaLR 0 374 302 1697 171 19 7 chr13 41009244 41009553 -78735345 - MLT1A1 LTR MaLR -52 313 1 312 260 67 10 chr13 41009622 41009726 -78735172 + L1M4 LINE L1 2869 2978 -3168 1671 120 0 0 chr13 41009729 41009946 -78734952 + AluSg/x SINE Alu 77 293 -17 281 242 0 0 chr13 41010333 41010399 -78734499 + L1M4 LINE L1 2963 3028 -3118 355 302 45 64 chr13 41010432 41010637 -78734261 + L1M4 LINE L1 3485 3685 -2461 258 353 81 22 chr13 41010697 41010833 -78734065 - L2 LINE L2 -2 3270 3127 27 29 0 0 chr13 41011257 41011291 -78733607 + AT_rich Low_complexity Low_complexity 1 34 0 1293 179 0 0 chr13 41011298 41011505 -78733393 - AluJo SINE Alu -105 207 1 304 324 18 0 chr13 41012077 41012188 -78732710 - L1M4 LINE L1 -3316 2830 2718 798 150 34 0 chr13 41012254 41012401 -78732497 + L1MA6 LINE L1 6144 6295 -5 2387 85 0 3 chr13 41012430 41012737 -78732161 + AluSc SINE Alu 1 306 -3 320 368 22 44 chr13 41012772 41012954 -78731944 - MER5B DNA MER1_type 0 178 1 976 189 6 0 chr13 41013016 41013196 -78731702 + MER58A DNA MER1_type 40 220 -4 259 210 32 172 chr13 41013198 41013264 -78731634 - MER112 DNA MER1_type -33 227 193 1514 136 0 117 chr13 41013264 41013604 -78731294 - AluJb SINE Alu 0 306 4 259 210 32 172 chr13 41013604 41013693 -78731205 - MER112 DNA MER1_type -67 193 93 1593 122 52 4 chr13 41013743 41014013 -78730885 - Tigger3b DNA MER2_type 0 1231 949 267 184 46 35 chr13 41014027 41014201 -78730697 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 226 79 79 0 chr13 41014203 41014266 -78730632 + (TA)n Simple_repeat Simple_repeat 1 68 0 1912 114 0 15 chr13 41014266 41014539 -78730359 - AluSx SINE Alu -23 289 21 4678 114 63 54 chr13 41014543 41015170 -78729728 - Tigger3b DNA MER2_type -2086 942 302 2184 114 7 3 chr13 41015170 41015469 -78729429 + AluSx SINE Alu 3 302 -10 4678 114 63 54 chr13 41015469 41015774 -78729124 - Tigger3b DNA MER2_type -2726 302 1 225 128 128 0 chr13 41016145 41016192 -78728706 + MIR SINE MIR 138 190 -72 803 122 0 38 chr13 41016266 41016397 -78728501 - FLAM_C SINE Alu -7 126 1 2167 106 3 0 chr13 41016826 41017110 -78727788 + AluSg SINE Alu 11 295 -15 196 266 94 0 chr13 41017244 41017308 -78727590 - L3 LINE CR1 -13 1564 1495 359 280 93 0 chr13 41017309 41017416 -78727482 - L2 LINE L2 -4 3309 3193 219 333 78 0 chr13 41017423 41017513 -78727385 - L3 LINE CR1 -84 1493 1397 219 183 7 222 chr13 41017552 41017705 -78727193 - L3 LINE CR1 -278 1299 1180 2863 6 0 0 chr13 41017765 41018076 -78726822 - AluYa5 SINE Alu 0 311 1 327 237 82 0 chr13 41018128 41018225 -78726673 + LTR50 LTR ERVL 18 122 -673 364 250 0 45 chr13 41018318 41018430 -78726468 + LTR50 LTR ERVL 367 473 -322 181 356 69 0 chr13 41018438 41018525 -78726373 + L2 LINE L2 2174 2266 -1048 217 327 97 43 chr13 41018583 41018840 -78726058 + L2 LINE L2 2418 2688 -626 2272 120 75 35 chr13 41019342 41019767 -78725131 + L1MD1 LINE L1 5801 6242 0 255 320 117 10 chr13 41021431 41021534 -78723364 + L2 LINE L2 3158 3271 -1 2253 102 17 0 chr13 41021570 41021864 -78723034 - AluSx SINE Alu -13 299 1 224 193 175 0 chr13 41022535 41022592 -78722306 - L2 LINE L2 -5 3308 3242 242 196 36 18 chr13 41022704 41022760 -78722138 - L2 LINE L2 -209 3063 3007 23 33 0 0 chr13 41023508 41023538 -78721360 + AT_rich Low_complexity Low_complexity 1 30 0 1898 112 83 0 chr13 41025779 41026055 -78718843 - AluSx SINE Alu -13 299 1 30 0 0 0 chr13 41026249 41026279 -78718619 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr13 41026740 41026789 -78718109 + AT_rich Low_complexity Low_complexity 1 49 0 539 215 19 0 chr13 41029319 41029426 -78715472 - MER5A DNA MER1_type -80 109 1 721 128 149 103 chr13 41029434 41029574 -78715324 + MER3 DNA MER1_type 1 154 -55 1513 180 18 25 chr13 41029574 41029852 -78715046 - AluJo SINE Alu -36 276 1 721 128 149 103 chr13 41029852 41029906 -78714992 + MER3 DNA MER1_type 154 204 -5 240 135 0 0 chr13 41030846 41030883 -78714015 - tRNA-Lys-AAG tRNA tRNA -37 39 3 2058 104 7 33 chr13 41031327 41031626 -78713272 - AluSx SINE Alu -21 291 1 435 209 0 0 chr13 41031952 41032057 -78712841 + (TA)n Simple_repeat Simple_repeat 2 106 0 25 31 0 0 chr13 41032121 41032153 -78712745 + AT_rich Low_complexity Low_complexity 1 32 0 35 54 0 0 chr13 41032504 41032560 -78712338 + AT_rich Low_complexity Low_complexity 1 56 0 252 300 0 0 chr13 41033602 41033692 -78711206 + A-rich Low_complexity Low_complexity 1 90 0 563 125 28 28 chr13 41033953 41034097 -78710801 + CT-rich Low_complexity Low_complexity 1 144 0 21 0 0 0 chr13 41034804 41034825 -78710073 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr13 41035254 41035287 -78709611 + AT_rich Low_complexity Low_complexity 1 33 0 6316 78 23 10 chr13 41035417 41035827 -78709071 - L1PA10 LINE L1 0 6168 5765 2157 117 0 10 chr13 41035827 41036125 -78708773 - AluSg SINE Alu -15 295 1 6316 78 23 10 chr13 41036125 41036795 -78708103 - L1PA10 LINE L1 -403 5765 5096 2301 108 0 0 chr13 41036909 41037206 -78707692 - AluSg SINE Alu -13 297 1 1729 183 0 3 chr13 41037476 41037761 -78707137 + AluJo SINE Alu 1 284 -28 26 30 0 0 chr13 41037771 41037804 -78707094 + AT_rich Low_complexity Low_complexity 1 33 0 1024 307 111 28 chr13 41037858 41038519 -78706379 - L2 LINE L2 -238 3034 2329 1830 182 46 36 chr13 41038524 41038915 -78705983 + L1PB4 LINE L1 5738 6132 -24 236 189 82 98 chr13 41038844 41038932 -78705966 + L1MA4A LINE L1 6182 6269 -34 * 1996 125 3 3 chr13 41038932 41039219 -78705679 - AluY SINE Alu -24 287 1 236 189 82 98 chr13 41039219 41039252 -78705646 + L1MA4A LINE L1 6269 6301 -2 206 219 16 0 chr13 41039839 41039903 -78704995 + (TATG)n Simple_repeat Simple_repeat 2 66 0 28 0 0 0 chr13 41040204 41040232 -78704666 + AT_rich Low_complexity Low_complexity 1 28 0 433 250 32 8 chr13 41042706 41042830 -78702068 - L1MB3 LINE L1 -9 6174 6048 2106 134 0 7 chr13 41043890 41044196 -78700702 + AluSx SINE Alu 1 304 -8 363 327 52 20 chr13 41044517 41044637 -78700261 + MIR3 SINE MIR 26 141 -67 225 0 0 0 chr13 41044637 41044662 -78700236 + (ATG)n Simple_repeat Simple_repeat 2 26 0 1951 140 0 3 chr13 41044662 41044947 -78699951 - AluSx SINE Alu -28 284 1 363 327 52 20 chr13 41044947 41044978 -78699920 + MIR3 SINE MIR 140 183 -25 23 33 0 0 chr13 41044982 41045012 -78699886 + AT_rich Low_complexity Low_complexity 1 30 0 1705 129 57 18 chr13 41045156 41045436 -78699462 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr13 41047189 41047217 -78697681 + AT_rich Low_complexity Low_complexity 1 28 0 413 283 86 20 chr13 41048633 41048785 -78696113 - MIR SINE MIR -75 187 26 187 403 52 13 chr13 41049088 41049242 -78695656 + L3 LINE CR1 67 226 -1351 * 210 340 170 23 chr13 41049231 41049578 -78695320 + L2 LINE L2 2269 2666 -648 234 318 163 50 chr13 41049617 41049979 -78694919 + L2 LINE L2 2810 3212 -60 256 221 65 39 chr13 41050564 41050641 -78694257 + L3 LINE CR1 609 687 -890 2433 119 5 30 chr13 41050685 41050981 -78693917 + THE1B LTR MaLR 3 290 -74 2217 113 0 3 chr13 41050981 41051283 -78693615 - AluSx SINE Alu -11 301 1 2433 119 5 30 chr13 41051283 41051357 -78693541 + THE1B LTR MaLR 290 364 0 298 208 115 10 chr13 41051385 41051481 -78693417 - MIR SINE MIR -70 192 87 756 166 83 2 chr13 41052318 41052532 -78692366 + AluJ SINE Alu 44 306 -6 1882 143 29 76 chr13 41052653 41053073 -78691825 + L1MC2 LINE L1 5928 6327 -17 37 23 0 0 chr13 41053823 41053867 -78691031 + AT_rich Low_complexity Low_complexity 1 44 0 337 228 323 6 chr13 41054543 41054710 -78690188 + MIR SINE MIR 43 262 0 189 0 0 0 chr13 41054982 41055003 -78689895 + (TA)n Simple_repeat Simple_repeat 2 22 0 2039 136 0 3 chr13 41055208 41055494 -78689404 + AluSx SINE Alu 1 285 -27 408 40 0 0 chr13 41055494 41055544 -78689354 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 1232 84 11 0 chr13 41055545 41055723 -78689175 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1824 176 92 36 chr13 41055745 41056223 -78688675 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr13 41056810 41056832 -78688066 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr13 41057609 41057649 -78687249 + AT_rich Low_complexity Low_complexity 1 40 0 308 143 0 0 chr13 41058349 41058398 -78686500 + L2 LINE L2 3265 3313 0 25 31 0 0 chr13 41058528 41058560 -78686338 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 41058798 41058819 -78686079 + AT_rich Low_complexity Low_complexity 1 21 0 983 183 0 11 chr13 41058838 41059013 -78685885 - FRAM SINE Alu -4 172 1 354 206 227 14 chr13 41059155 41059296 -78685602 + MIR SINE MIR 48 218 -44 349 180 279 9 chr13 41059360 41059471 -78685427 + MIR SINE MIR 48 188 -74 26 50 0 0 chr13 41059572 41059612 -78685286 + AT_rich Low_complexity Low_complexity 1 40 0 215 269 26 0 chr13 41060500 41060578 -78684320 + T-rich Low_complexity Low_complexity 5 84 0 1657 207 84 22 chr13 41060626 41061090 -78683808 + Charlie4a DNA MER1_type 12 504 -4 2022 115 0 4 chr13 41061410 41061715 -78683183 + AluSc SINE Alu 3 306 0 1050 154 6 11 chr13 41064961 41065136 -78679762 - AluJb SINE Alu -2 310 137 2247 114 13 0 chr13 41065419 41065727 -78679171 - AluSx SINE Alu 0 312 1 4149 190 48 14 chr13 41065889 41066975 -78677923 - L1MB7 LINE L1 -9 6175 5043 382 258 21 10 chr13 41067082 41067179 -78677719 + MER5A DNA MER1_type 38 135 -54 1929 149 0 10 chr13 41067179 41067480 -78677418 - AluSg SINE Alu -12 298 1 254 261 72 0 chr13 41068231 41068266 -78676632 + AluJb SINE Alu 96 135 -167 1784 159 25 0 chr13 41068266 41068542 -78676356 + AluJo SINE Alu 1 283 -29 593 285 117 37 chr13 41069424 41069722 -78675176 + L3 LINE CR1 519 840 -737 303 283 99 76 chr13 41069808 41070031 -78674867 + L3 LINE CR1 1055 1282 -295 556 153 7 29 chr13 41070033 41070170 -78674728 + GA-rich Low_complexity Low_complexity 2 135 0 387 253 158 41 chr13 41070301 41070522 -78674376 + L3 LINE CR1 1320 1566 -11 696 250 52 0 chr13 41070632 41070804 -78674094 - MIR SINE MIR -28 234 54 1055 131 47 11 chr13 41071181 41071372 -78673526 - L1PA16 LINE L1 0 6166 5969 1935 145 0 3 chr13 41072731 41073020 -78671878 + AluJb SINE Alu 1 288 -24 22 0 0 0 chr13 41073276 41073298 -78671600 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 41073926 41073947 -78670951 + AT_rich Low_complexity Low_complexity 1 21 0 2126 124 3 0 chr13 41075023 41075313 -78669585 + AluSx SINE Alu 1 291 -21 375 23 0 0 chr13 41076644 41076688 -78668210 + (CA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr13 41077801 41077823 -78667075 + AT_rich Low_complexity Low_complexity 1 22 0 1398 204 10 31 chr13 41077825 41078119 -78666779 - AluJo SINE Alu -14 288 1 1041 284 99 2 chr13 41078136 41078541 -78666357 - Tigger8 DNA MER2_type -177 489 46 361 255 92 21 chr13 41078542 41078683 -78666215 + MIR3 SINE MIR 55 205 -3 1969 171 0 0 chr13 41079398 41079690 -78665208 - AluJb SINE Alu -18 294 3 24 53 0 0 chr13 41079887 41079925 -78664973 + AT_rich Low_complexity Low_complexity 1 38 0 213 225 0 0 chr13 41079928 41079968 -78664930 + (CA)n Simple_repeat Simple_repeat 1 40 0 1922 155 30 6 chr13 41079968 41080303 -78664595 - MER2 DNA MER2_type 0 344 2 403 256 127 71 chr13 41080523 41080957 -78663941 + L1M2 LINE L1 417 1396 -5453 2659 36 0 3 chr13 41081395 41081704 -78663194 - AluY SINE Alu -3 308 1 1882 148 0 26 chr13 41082902 41083206 -78661692 - AluJb SINE Alu -14 298 3 1936 252 105 28 chr13 41084823 41085641 -78659257 + L1ME2 LINE L1 5265 6145 -19 233 271 113 18 chr13 41086679 41086818 -78658080 - MIR SINE MIR 0 262 72 390 145 48 0 chr13 41087326 41087409 -78657489 + L1ME4a LINE L1 5997 6083 -38 915 187 0 23 chr13 41087829 41088000 -78656898 + AluJb SINE Alu 137 303 -9 339 85 0 0 chr13 41088710 41088757 -78656141 + (CA)n Simple_repeat Simple_repeat 2 48 0 302 278 70 17 chr13 41088959 41089074 -78655824 + MER112 DNA MER1_type 128 248 -12 1902 159 3 0 chr13 41089428 41089724 -78655174 + AluJb SINE Alu 1 297 -15 2147 119 0 3 chr13 41089724 41090017 -78654881 + AluSq SINE Alu 1 292 -21 1856 87 28 32 chr13 41090316 41090569 -78654329 + AluSc SINE Alu 36 287 -22 2571 53 3 0 chr13 41090571 41090874 -78654024 + AluY SINE Alu 1 304 -7 182 313 199 46 chr13 41090900 41091031 -78653867 - L2 LINE L2 0 3272 3122 342 264 72 77 chr13 41091360 41091568 -78653330 + MIR SINE MIR 22 228 -34 2379 87 0 0 chr13 41091739 41092038 -78652860 - AluSx SINE Alu -13 299 1 186 43 0 0 chr13 41092251 41092274 -78652624 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 852 206 0 0 chr13 41092278 41092433 -78652465 - AluJb SINE Alu -22 290 136 559 41 165 10 chr13 41092659 41092756 -78652142 - L1MA9 LINE L1 -17 6295 6184 413 238 16 97 chr13 41093659 41093844 -78651054 - L2 LINE L2 0 3313 3144 428 267 9 9 chr13 41096631 41096736 -78648162 + MER2 DNA MER2_type 1 105 -240 256 256 12 24 chr13 41097628 41097710 -78647188 + GA-rich Low_complexity Low_complexity 1 81 0 7638 27 1 0 chr13 41098626 41099837 -78645061 + L1PA3 LINE L1 4944 6155 0 2089 121 0 0 chr13 41099878 41100159 -78644739 - AluSq SINE Alu -14 299 19 2135 131 0 7 chr13 41100164 41100470 -78644428 - AluSq SINE Alu -9 304 1 2345 90 3 6 chr13 41100888 41101199 -78643699 - AluY SINE Alu -1 310 1 1117 61 0 0 chr13 41101201 41101332 -78643566 - AluY SINE Alu -180 131 1 490 250 17 0 chr13 41103774 41103890 -78641008 + L1ME3A LINE L1 6035 6152 -18 1918 132 3 14 chr13 41104640 41104959 -78639939 + AluSx SINE Alu 1 316 0 598 63 0 0 chr13 41105114 41105193 -78639705 - AluS SINE Alu -234 79 1 27 0 0 0 chr13 41105308 41105335 -78639563 + AT_rich Low_complexity Low_complexity 1 27 0 493 328 81 0 chr13 41105686 41105872 -78639026 - MIR SINE MIR -57 205 5 1454 156 27 19 chr13 41106194 41106451 -78638447 + AluJo SINE Alu 37 295 -17 22 0 0 0 chr13 41107756 41107778 -78637120 + AT_rich Low_complexity Low_complexity 1 22 0 1076 60 0 0 chr13 41107806 41107940 -78636958 - AluSc SINE Alu -175 134 1 554 224 29 46 chr13 41109750 41109924 -78634974 + LTR1B LTR ERV1 650 820 -6 434 204 10 0 chr13 41110172 41110275 -78634623 + (TA)n Simple_repeat Simple_repeat 1 104 0 582 186 2 1 chr13 41110437 41110551 -78634347 - MLT1D LTR MaLR 0 505 251 3048 105 34 16 chr13 41110553 41111047 -78633851 + L1PB4 LINE L1 5289 5791 -365 243 95 0 5 chr13 41111045 41111084 -78633814 - L1P5 LINE L1 -322 5829 5790 * 324 0 0 0 chr13 41111084 41111120 -78633778 + (TG)n Simple_repeat Simple_repeat 2 37 0 2098 127 43 32 chr13 41111175 41111192 -78633706 + L1PB4 LINE L1 5782 5797 -359 252 0 0 0 chr13 41111192 41111220 -78633678 + (CA)n Simple_repeat Simple_repeat 2 29 0 2098 127 43 32 chr13 41111220 41111573 -78633325 + L1PB4 LINE L1 5797 6156 0 1410 180 129 42 chr13 41111574 41111930 -78632968 - MLT1D LTR MaLR -118 387 1 312 286 95 24 chr13 41113136 41113262 -78631636 - L2 LINE L2 -1 3271 3137 1528 185 66 0 chr13 41113470 41113757 -78631141 + AluJo SINE Alu 1 306 -6 216 200 22 0 chr13 41114494 41114539 -78630359 - MIR SINE MIR -132 130 85 614 270 57 20 chr13 41116006 41116254 -78628644 - L1MC4a LINE L1 -1884 5924 5668 2086 130 16 0 chr13 41117987 41118294 -78626604 - AluSx SINE Alu 0 312 1 600 13 0 0 chr13 41118693 41118772 -78626126 - L1PA4 LINE L1 -3010 3136 3058 18477 35 39 1 chr13 41118770 41121766 -78623132 + L1PA4 LINE L1 3123 6153 -2 40 0 0 0 chr13 41121766 41121806 -78623092 + AT_rich Low_complexity Low_complexity 1 40 0 295 280 0 43 chr13 41122923 41123016 -78621882 + L2 LINE L2 3225 3313 0 22 56 0 0 chr13 41123861 41123897 -78621001 + AT_rich Low_complexity Low_complexity 1 36 0 472 219 53 18 chr13 41124193 41124307 -78620591 - L2 LINE L2 -1 3271 3154 209 313 172 16 chr13 41124495 41124623 -78620275 + MIR3 SINE MIR 37 184 -24 748 307 100 24 chr13 41124640 41125021 -78619877 - L3 LINE CR1 -119 1458 1049 438 305 127 20 chr13 41125154 41125351 -78619547 + MIR SINE MIR 2 219 -43 714 274 11 16 chr13 41126558 41126748 -78618150 - MIR SINE MIR -62 200 12 21 0 0 0 chr13 41127152 41127173 -78617725 + AT_rich Low_complexity Low_complexity 1 21 0 1990 134 31 0 chr13 41127190 41127482 -78617416 - AluJb SINE Alu -11 301 1 1714 136 96 0 chr13 41127705 41127977 -78616921 - AluSx SINE Alu -13 299 2 964 120 15 0 chr13 41127978 41128111 -78616787 - AluSq/x SINE Alu -177 135 1 516 159 119 32 chr13 41128129 41128255 -78616643 + MLT1E3 LTR MaLR 486 622 -2 323 201 43 95 chr13 41128352 41128511 -78616387 + MLT1H1 LTR MaLR 1 157 -398 1859 160 6 13 chr13 41128975 41129287 -78615611 - AluJo SINE Alu -2 310 1 187 85 43 21 chr13 41129487 41129514 -78615384 + A-rich Low_complexity Low_complexity 5 30 -22 2279 97 0 10 chr13 41129514 41129812 -78615086 - AluY SINE Alu -16 295 1 1589 143 120 0 chr13 41129821 41130079 -78614819 - AluJo SINE Alu -23 289 1 1664 121 8 0 chr13 41130292 41130557 -78614341 + L1MA5A LINE L1 6028 6294 -3 184 281 0 18 chr13 41131141 41131198 -78613700 + L2 LINE L2 1358 1413 -1901 756 295 108 52 chr13 41131244 41131882 -78613016 + L2 LINE L2 1514 2187 -1127 206 265 0 0 chr13 41132273 41132322 -78612576 + L2 LINE L2 3264 3312 -1 26 30 0 0 chr13 41132842 41132875 -78612023 + AT_rich Low_complexity Low_complexity 1 33 0 196 167 24 0 chr13 41133569 41133611 -78611287 + MIR SINE MIR 96 138 -124 22 35 0 0 chr13 41134380 41134409 -78610489 + AT_rich Low_complexity Low_complexity 1 29 0 195 270 14 40 chr13 41134585 41134659 -78610239 - MIR SINE MIR -20 242 171 189 0 0 0 chr13 41134754 41134775 -78610123 + (TC)n Simple_repeat Simple_repeat 1 21 0 1047 229 47 20 chr13 41135547 41135800 -78609098 + MIR SINE MIR 2 261 -1 236 318 129 47 chr13 41135840 41136095 -78608803 - L2 LINE L2 -181 3091 2816 417 237 182 67 chr13 41136174 41136520 -78608378 + L2 LINE L2 2826 3211 -102 203 250 0 21 chr13 41136790 41136838 -78608060 + L2 LINE L2 3231 3277 -36 602 292 44 22 chr13 41137128 41137354 -78607544 + MIR SINE MIR 20 250 -12 183 139 28 0 chr13 41137639 41137675 -78607223 + MER5B DNA MER1_type 142 178 0 490 285 91 0 chr13 41138650 41138836 -78606062 - L1ME1 LINE L1 -5 6161 5959 1201 222 43 6 chr13 41138841 41139294 -78605604 - L1ME1 LINE L1 -648 5518 5049 2378 146 33 24 chr13 41140022 41140441 -78604457 + MSTC LTR MaLR 4 426 -2 2067 147 34 3 chr13 41141224 41141578 -78603320 - MER47A DNA MER2_type 0 366 2 362 74 19 0 chr13 41141578 41141632 -78603266 + (TG)n Simple_repeat Simple_repeat 2 56 0 392 135 27 0 chr13 41142927 41143001 -78601897 + L1MB2 LINE L1 6071 6146 -25 23 78 0 0 chr13 41143001 41143052 -78601846 + AT_rich Low_complexity Low_complexity 1 51 0 2379 62 0 0 chr13 41144472 41144763 -78600135 - AluY SINE Alu -20 291 1 224 319 149 0 chr13 41144989 41145083 -78599815 - L2 LINE L2 -13 3259 3152 189 356 111 36 chr13 41146738 41147126 -78597772 + L2 LINE L2 2543 2959 -355 191 422 73 0 chr13 41147285 41147394 -78597504 + L2 LINE L2 3140 3256 -16 354 256 22 0 chr13 41147579 41147669 -78597229 + MIR SINE MIR 48 139 -123 22 0 0 0 chr13 41147975 41147997 -78596901 + AT_rich Low_complexity Low_complexity 1 22 0 202 250 76 43 chr13 41148089 41148181 -78596717 + L2 LINE L2 2289 2383 -931 * 499 300 7 14 chr13 41148156 41148296 -78596602 + L2 LINE L2 3134 3272 0 249 309 211 8 chr13 41149251 41149374 -78595524 - MER5B DNA MER1_type 0 178 31 1033 143 12 0 chr13 41150253 41150414 -78594484 + FRAM SINE Alu 1 163 -13 2175 94 10 0 chr13 41151112 41151400 -78593498 - AluSx SINE Alu -21 291 1 1371 48 0 0 chr13 41151626 41151792 -78593106 - L1PA10 LINE L1 -1 6167 6002 204 40 0 0 chr13 41152086 41152111 -78592787 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 223 85 43 21 chr13 41152702 41152749 -78592149 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 321 140 0 0 chr13 41153003 41153060 -78591838 + (CA)n Simple_repeat Simple_repeat 2 58 0 811 255 45 10 chr13 41153292 41153492 -78591406 + MIR SINE MIR 43 249 -13 213 353 57 25 chr13 41153523 41153645 -78591253 + L2 LINE L2 3143 3268 -4 186 338 41 35 chr13 41153955 41154100 -78590798 + L2 LINE L2 2196 2341 -973 274 388 0 20 chr13 41154129 41154227 -78590671 + MIR3 SINE MIR 10 105 -103 303 290 24 93 chr13 41155175 41155423 -78589475 + L2 LINE L2 2708 2938 -376 2098 120 3 10 chr13 41155637 41155937 -78588961 - AluSg SINE Alu -12 298 1 2320 110 0 7 chr13 41156391 41156701 -78588197 + AluSx SINE Alu 1 308 -4 471 227 31 23 chr13 41156775 41156903 -78587995 - L2 LINE L2 0 3313 3185 1949 178 28 38 chr13 41157229 41157629 -78587269 + MSTD LTR MaLR 1 396 0 294 125 0 0 chr13 41157650 41157698 -78587200 + (CATA)n Simple_repeat Simple_repeat 4 51 0 295 273 64 14 chr13 41157972 41158126 -78586772 + MLT1J LTR MaLR 1 194 -294 583 267 54 67 chr13 41158216 41158587 -78586311 + MLT1J2 LTR MaLR 64 429 -21 346 241 0 23 chr13 41158613 41158700 -78586198 + MLT1J LTR MaLR 376 460 -51 584 248 17 84 chr13 41158831 41159069 -78585829 + MLT1L LTR MaLR 23 244 -371 267 31 0 0 chr13 41160894 41160926 -78583972 + (TC)n Simple_repeat Simple_repeat 1 32 0 1040 194 40 0 chr13 41161124 41161325 -78583573 + MER3 DNA MER1_type 1 209 0 274 212 271 0 chr13 41161721 41161806 -78583092 - MIR SINE MIR -67 141 34 3633 110 25 11 chr13 41162175 41162695 -78582203 - MER1A DNA MER1_type 0 527 1 314 244 44 22 chr13 41162981 41163071 -78581827 + L2 LINE L2 3220 3311 -2 192 291 36 18 chr13 41163349 41163404 -78581494 + L2 LINE L2 3248 3303 -10 2161 124 0 3 chr13 41164196 41164495 -78580403 - AluSx SINE Alu -14 298 1 25 31 0 0 chr13 41164495 41164527 -78580371 + AT_rich Low_complexity Low_complexity 1 32 0 1320 265 83 52 chr13 41164614 41165323 -78579575 + HAL1 LINE L1 78 808 -1699 1104 233 114 26 chr13 41165352 41165815 -78579083 + HAL1 LINE L1 1148 1651 -856 2898 104 32 2 chr13 41166172 41166604 -78578294 + L1PA16 LINE L1 5719 6163 -3 2312 111 0 0 chr13 41167236 41167542 -78577356 + AluSx SINE Alu 1 306 -6 183 133 33 0 chr13 41167548 41167578 -78577320 - L2 LINE L2 -16 3256 3226 1843 36 0 0 chr13 41168420 41168641 -78576257 - L1PA4 LINE L1 -3 6152 5932 4177 159 23 24 chr13 41168670 41169439 -78575459 - L1MB2 LINE L1 0 6240 5471 1982 154 0 3 chr13 41169439 41169738 -78575160 - AluJb SINE Alu -14 298 1 4177 159 23 24 chr13 41169738 41169787 -78575111 - L1MB2 LINE L1 -769 5471 5423 4311 152 22 25 chr13 41169804 41170657 -78574241 - L1MA4 LINE L1 -5 6295 5445 677 117 9 9 chr13 41170657 41170768 -78574130 + L1M1 LINE L1 5524 5634 -666 * 1680 106 14 0 chr13 41170765 41171154 -78573744 - L1M1 LINE L1 -743 5403 5107 3377 211 55 30 chr13 41171164 41171582 -78573316 - L1MB2 LINE L1 -777 5438 5032 1451 184 13 93 chr13 41171582 41171979 -78572919 - MLT1A1 LTR MaLR 0 365 1 3377 211 55 30 chr13 41171979 41172524 -78572374 - L1MB2 LINE L1 -1183 5032 4451 416 181 128 0 chr13 41172526 41172620 -78572278 - HERVL40 LTR ERVL -929 4601 4496 5657 250 66 29 chr13 41172638 41172820 -78572078 - L1MB2 LINE L1 -3211 3004 2830 2050 207 35 41 chr13 41172820 41173328 -78571570 + MLT1D LTR MaLR 1 505 0 5657 250 66 29 chr13 41173328 41175614 -78569284 - L1MB2 LINE L1 -3385 2830 442 360 0 0 0 chr13 41175614 41175654 -78569244 + (TG)n Simple_repeat Simple_repeat 2 41 0 5657 250 66 29 chr13 41175654 41176087 -78568811 - L1MB2 LINE L1 -5773 442 27 1888 156 10 0 chr13 41176482 41176771 -78568127 + AluSx SINE Alu 2 293 -19 22 35 0 0 chr13 41177596 41177625 -78567273 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr13 41178434 41178473 -78566425 + AT_rich Low_complexity Low_complexity 1 39 0 1918 237 58 45 chr13 41180616 41181169 -78563729 + L1MC4a LINE L1 6441 7006 -802 2065 145 0 0 chr13 41181169 41181465 -78563433 + AluSx SINE Alu 1 296 -16 1918 237 58 45 chr13 41181465 41181578 -78563320 + L1MC4a LINE L1 7006 7116 -692 282 187 80 13 chr13 41181705 41181780 -78563118 + MIR SINE MIR 65 144 -64 991 226 126 12 chr13 41182593 41183076 -78561822 + HAL1b LINE L1 322 884 -464 750 257 15 0 chr13 41183201 41183394 -78561504 + L1PB4 LINE L1 5963 6295 -10 21 0 0 0 chr13 41183399 41183420 -78561478 + AT_rich Low_complexity Low_complexity 1 21 0 2219 88 16 16 chr13 41183483 41183789 -78561109 + AluSx SINE Alu 1 306 -6 427 169 0 12 chr13 41183918 41184001 -78560897 + HAL1b LINE L1 1186 1267 -81 239 209 105 23 chr13 41184102 41184188 -78560710 + MLT1J LTR MaLR 79 171 -340 * 306 229 114 57 chr13 41184118 41184223 -78560675 + MLT2E LTR ERVL 32 142 -486 233 269 26 13 chr13 41184468 41184546 -78560352 + LTR33A LTR ERVL 445 523 0 243 348 56 0 chr13 41184763 41184852 -78560046 - L2 LINE L2 -612 2702 2609 293 333 68 0 chr13 41187567 41187684 -78557214 - MIR SINE MIR -66 196 72 459 78 0 0 chr13 41187995 41188059 -78556839 + (TGGA)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chr13 41188577 41188598 -78556300 + AT_rich Low_complexity Low_complexity 1 21 0 204 241 37 0 chr13 41188836 41188890 -78556008 + L2 LINE L2 3007 3062 -210 2175 164 6 3 chr13 41188968 41189333 -78555565 - MER47A DNA MER2_type 0 366 1 840 276 17 27 chr13 41189613 41189910 -78554988 - L2 LINE L2 -5 3308 3015 765 261 59 32 chr13 41190240 41190493 -78554405 - MIR SINE MIR -1 261 2 27 49 0 0 chr13 41194453 41194494 -78550404 + AT_rich Low_complexity Low_complexity 1 41 0 198 0 0 0 chr13 41194987 41195009 -78549889 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 973 207 5 20 chr13 41195483 41195686 -78549212 + MER82 DNA MER2_type 5 204 -449 1851 197 103 7 chr13 41195779 41196186 -78548712 + MER82 DNA MER2_type 206 651 -2 894 144 7 20 chr13 41196327 41196480 -78548418 - L1MB3 LINE L1 -348 5835 5685 2063 112 14 7 chr13 41196504 41196790 -78548108 + AluSx SINE Alu 1 288 -24 323 209 302 8 chr13 41197621 41197750 -78547148 - MIR SINE MIR -5 257 91 1309 255 79 77 chr13 41198087 41198750 -78546148 + L2 LINE L2 995 1662 -1652 2280 89 3 0 chr13 41198750 41199042 -78545856 - AluSp SINE Alu -20 293 1 1309 255 79 77 chr13 41199042 41199146 -78545752 + L2 LINE L2 1662 1764 -1550 260 264 0 0 chr13 41199228 41199281 -78545617 - MIR SINE MIR -1 261 209 412 266 30 75 chr13 41199312 41199511 -78545387 + L2 LINE L2 2813 3002 -311 305 246 0 0 chr13 41199558 41199619 -78545279 + Charlie1 DNA MER1_type 38 98 -2663 710 307 117 21 chr13 41200564 41200689 -78544209 + L2 LINE L2 2953 3065 -248 273 29 0 0 chr13 41200689 41200723 -78544175 + (CA)n Simple_repeat Simple_repeat 2 35 0 710 307 117 21 chr13 41200723 41200923 -78543975 + L2 LINE L2 3065 3309 -4 4134 115 48 0 chr13 41201204 41201788 -78543110 + LTR9 LTR ERV1 1 612 0 2008 134 7 3 chr13 41202182 41202473 -78542425 + AluSx SINE Alu 1 292 -20 294 348 27 0 chr13 41202968 41203080 -78541818 - L2 LINE L2 0 3313 3199 711 144 150 40 chr13 41203117 41203299 -78541599 - THE1C LTR MaLR 0 375 185 2336 105 0 0 chr13 41203300 41203604 -78541294 - AluSx SINE Alu -8 304 1 845 282 64 23 chr13 41203604 41204001 -78540897 - L2 LINE L2 -164 3149 2729 772 283 134 19 chr13 41204021 41204496 -78540402 - L1ME LINE L1 -398 5764 5236 1716 211 98 25 chr13 41204498 41204938 -78539960 - MLT1D LTR MaLR 0 505 34 243 206 0 48 chr13 41204938 41205001 -78539897 - L1MC5 LINE L1 -75 7886 7827 253 200 0 0 chr13 41205041 41205091 -78539807 - L1ME3 LINE L1 0 6162 6113 2369 211 90 38 chr13 41205093 41205758 -78539140 - L1ME1 LINE L1 -107 6059 5360 43094 30 21 1 chr13 41205820 41211851 -78533047 - L1PA2 LINE L1 0 6155 1 408 188 47 16 chr13 41211852 41211980 -78532918 - L1ME1 LINE L1 -864 5282 5151 2488 224 18 18 chr13 41211981 41212578 -78532320 - L1ME1 LINE L1 -2 6164 5568 1134 205 95 79 chr13 41212580 41212946 -78531952 - MLT1C LTR MaLR -103 364 1 462 253 57 50 chr13 41213007 41213288 -78531610 - L1MEd LINE L1 -4896 1223 941 198 324 29 29 chr13 41213476 41213612 -78531286 + L2 LINE L2 1964 2099 -1215 597 279 30 6 chr13 41214230 41214395 -78530503 - MIR SINE MIR 0 262 94 888 173 56 0 chr13 41214484 41214663 -78530235 - MER53 DNA DNA 0 189 1 1716 131 92 3 chr13 41214721 41215003 -78529895 + AluSx SINE Alu 1 307 -5 1042 201 11 0 chr13 41215305 41215494 -78529404 - MER20 DNA MER1_type -28 191 1 819 293 58 8 chr13 41216491 41216733 -78528165 - MIR SINE MIR -3 259 6 289 324 156 15 chr13 41216801 41217134 -78527764 - L2 LINE L2 -595 2719 2340 536 264 96 30 chr13 41218006 41218203 -78526695 - MIR SINE MIR -31 231 22 833 119 16 8 chr13 41219180 41219306 -78525592 + AluJb SINE Alu 1 127 -185 65 0 0 0 chr13 41219306 41219371 -78525527 + AT_rich Low_complexity Low_complexity 1 65 0 1020 172 18 0 chr13 41219371 41219540 -78525358 + AluJb SINE Alu 130 301 -11 2192 163 116 15 chr13 41219579 41220038 -78524860 - MLT1D LTR MaLR 0 505 1 2510 58 0 0 chr13 41220045 41220338 -78524560 - AluY SINE Alu -18 293 1 225 0 0 0 chr13 41220406 41220431 -78524467 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1447 167 144 20 chr13 41220722 41221028 -78523870 - MER2 DNA MER2_type 0 344 1 745 256 56 64 chr13 41221863 41221938 -78522960 - MIR SINE MIR 0 262 188 2173 201 56 63 chr13 41221938 41222494 -78522404 + MLT2B3 LTR ERVL 1 552 -2 745 256 56 64 chr13 41222494 41222668 -78522230 - MIR SINE MIR -74 188 15 393 22 0 0 chr13 41224149 41224195 -78520703 + (TG)n Simple_repeat Simple_repeat 1 46 0 2433 187 72 36 chr13 41225127 41225624 -78519274 + MLT2B2 LTR ERVL 1 515 0 380 321 112 5 chr13 41225950 41226137 -78518761 + MIR SINE MIR 48 254 -8 249 197 0 0 chr13 41226411 41226487 -78518411 + (TG)n Simple_repeat Simple_repeat 2 77 0 853 186 0 51 chr13 41227403 41227580 -78517318 + MER5A DNA MER1_type 1 168 -21 1401 189 129 30 chr13 41227740 41228143 -78516755 - HsTC2 DNA Tc2 0 1900 1282 226 319 49 92 chr13 41228374 41228722 -78516176 - L2 LINE L2 -832 2482 2150 294 262 87 32 chr13 41228902 41229028 -78515870 - L2 LINE L2 -1270 2044 1912 337 344 8 30 chr13 41229058 41229189 -78515709 - MIR SINE MIR -62 146 19 1783 186 43 55 chr13 41229269 41229614 -78515284 - MSTD LTR MaLR -2 394 53 2438 77 0 3 chr13 41229614 41229913 -78514985 - AluSq SINE Alu -15 298 1 1783 186 43 55 chr13 41229913 41229966 -78514932 - MSTD LTR MaLR -343 53 1 182 169 17 119 chr13 41230418 41230434 -78514464 + MER5A DNA MER1_type 2 11 -178 251 246 48 119 chr13 41230434 41230560 -78514338 - MER5A DNA MER1_type 0 189 73 487 250 29 43 chr13 41231477 41231562 -78513336 + MIR3 SINE MIR 68 152 -56 1769 172 3 23 chr13 41231562 41231870 -78513028 + AluJb SINE Alu 1 302 -10 487 250 29 43 chr13 41231870 41231924 -78512974 + MIR3 SINE MIR 152 205 -3 311 256 88 24 chr13 41232202 41232269 -78512629 + MER103 DNA DNA 14 88 -78 1019 175 40 0 chr13 41232269 41232446 -78512452 + MER3 DNA MER1_type 3 186 -23 352 231 67 39 chr13 41232948 41233052 -78511846 - MIR SINE MIR -78 184 78 238 194 15 30 chr13 41234441 41234508 -78510390 + MER5A DNA MER1_type 124 189 0 245 380 26 0 chr13 41234521 41234634 -78510264 + MIR SINE MIR 26 141 -67 559 298 12 29 chr13 41234650 41234821 -78510077 - MIR SINE MIR -80 182 15 207 200 0 0 chr13 41235521 41235566 -78509332 + (TA)n Simple_repeat Simple_repeat 1 45 0 273 326 72 43 chr13 41235713 41235851 -78509047 + L3 LINE CR1 1429 1570 -7 597 303 75 34 chr13 41235861 41236155 -78508743 - L3 LINE CR1 -355 1222 917 279 79 0 0 chr13 41236683 41236721 -78508177 + (CA)n Simple_repeat Simple_repeat 1 38 0 351 337 92 5 chr13 41238452 41238636 -78506262 + MIR SINE MIR 56 255 -7 207 69 0 0 chr13 41240373 41240402 -78504496 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 690 215 0 0 chr13 41240414 41240535 -78504363 - FLAM_C SINE Alu -21 122 2 21 0 0 0 chr13 41240538 41240559 -78504339 + AT_rich Low_complexity Low_complexity 1 21 0 491 297 61 12 chr13 41242603 41242768 -78502130 - MLT1K LTR MaLR -7 581 409 317 243 179 7 chr13 41242799 41242939 -78501959 - MLT1K LTR MaLR -269 319 156 195 270 203 0 chr13 41243901 41243975 -78500923 - L2 LINE L2 -11 3261 3173 437 312 60 36 chr13 41244848 41245358 -78499540 + L1MEd LINE L1 1026 1665 -825 2174 108 10 0 chr13 41246081 41246369 -78498529 + AluSx SINE Alu 1 291 -21 192 355 214 0 chr13 41246403 41246623 -78498275 - L2 LINE L2 -1158 2156 1890 570 176 54 38 chr13 41246812 41247054 -78497844 + L1MA9 LINE L1 5783 6020 -292 1510 165 111 7 chr13 41247054 41247168 -78497730 + AluJo SINE Alu 1 102 -210 333 0 0 0 chr13 41247168 41247205 -78497693 + (CA)n Simple_repeat Simple_repeat 2 38 0 1510 165 111 7 chr13 41247205 41247369 -78497529 + AluJo SINE Alu 102 308 -4 570 176 54 38 chr13 41247369 41247493 -78497405 + L1MA9 LINE L1 6020 6288 -24 216 0 0 0 chr13 41249724 41249748 -78495150 + (A)n Simple_repeat Simple_repeat 1 24 0 1893 124 0 70 chr13 41250009 41250339 -78494559 - AluJo SINE Alu -2 310 4 395 278 192 0 chr13 41250352 41250503 -78494395 + MER5A DNA MER1_type 4 183 -6 232 263 13 53 chr13 41250441 41250517 -78494381 - MER5A DNA MER1_type -109 80 8 * 240 250 152 36 chr13 41250704 41250816 -78494082 + MER5B DNA MER1_type 54 178 0 212 245 11 117 chr13 41250736 41250830 -78494068 - L3 LINE CR1 -79 1498 1415 * 430 277 21 0 chr13 41251357 41251451 -78493447 - L2 LINE L2 -40 3232 3137 180 111 0 0 chr13 41251892 41251919 -78492979 + (CA)n Simple_repeat Simple_repeat 2 28 0 632 241 79 15 chr13 41252511 41252714 -78492184 - L1MC5 LINE L1 -50 7911 7696 884 213 46 37 chr13 41256539 41256755 -78488143 - MER20 DNA MER1_type -1 218 1 466 288 124 33 chr13 41256946 41256999 -78487899 + L2 LINE L2 2605 2652 -662 2309 140 6 105 chr13 41256999 41257477 -78487421 + MSTB1 LTR MaLR 2 432 0 466 288 124 33 chr13 41257477 41257753 -78487145 + L2 LINE L2 2652 2964 -350 3136 168 39 8 chr13 41259269 41259854 -78485044 - L1MB3 LINE L1 -2 6181 5579 1477 200 43 7 chr13 41259867 41260147 -78484751 - AluJo SINE Alu -22 290 1 226 203 68 17 chr13 41260321 41260380 -78484518 - L2 LINE L2 -26 3287 3226 267 143 243 29 chr13 41260547 41260617 -78484281 - MIR SINE MIR -70 192 108 553 304 62 27 chr13 41261223 41261447 -78483451 - MIR SINE MIR -16 246 15 6399 148 24 25 chr13 41261705 41262915 -78481983 - L1MC1 LINE L1 -1 6612 5403 562 167 21 130 chr13 41262939 41263184 -78481714 - MLT1C LTR MaLR -46 421 157 1202 140 11 0 chr13 41263187 41263373 -78481525 - L1PA13 LINE L1 -11 6152 5965 5169 230 16 19 chr13 41263385 41264700 -78480198 - L1MC1 LINE L1 -1036 5390 4080 5600 168 29 38 chr13 41264704 41265541 -78479357 - L1MC1 LINE L1 -4554 2053 1045 1620 168 4 0 chr13 41265541 41265809 -78479089 - L1MB1 LINE L1 -1 6167 5899 5600 168 29 38 chr13 41265809 41266263 -78478635 - L1MC1 LINE L1 -5562 1045 588 4767 117 3 18 chr13 41266367 41267076 -78477822 - L1P3 LINE L1 -5761 700 3 346 255 93 47 chr13 41267170 41267382 -78477516 + L1ME4a LINE L1 5831 6060 -61 1888 134 79 0 chr13 41267382 41267672 -78477226 - AluSq SINE Alu 0 313 1 346 255 93 47 chr13 41267672 41267737 -78477161 + L1ME4a LINE L1 6060 6121 0 180 0 0 0 chr13 41267749 41267769 -78477129 + (T)n Simple_repeat Simple_repeat 1 20 0 2084 138 0 0 chr13 41269184 41269482 -78475416 - AluSx SINE Alu -14 298 1 265 267 17 0 chr13 41270224 41270284 -78474614 - MIR SINE MIR -201 61 1 245 278 0 14 chr13 41270287 41270359 -78474539 + GA-rich Low_complexity Low_complexity 2 72 0 265 349 161 20 chr13 41270457 41270755 -78474143 - L2 LINE L2 -3 3269 2930 203 293 53 0 chr13 41270754 41270829 -78474069 + MIR SINE MIR 158 236 -26 * 1562 198 0 29 chr13 41270941 41271254 -78473644 - AluJo SINE Alu -4 308 5 264 273 0 40 chr13 41273178 41273277 -78471621 + GA-rich Low_complexity Low_complexity 3 97 0 407 234 76 57 chr13 41273967 41274125 -78470773 - MIR SINE MIR -71 191 31 303 28 0 0 chr13 41274168 41274204 -78470694 + (TTG)n Simple_repeat Simple_repeat 2 37 0 352 311 31 19 chr13 41274649 41274810 -78470088 + MLT1H LTR MaLR 117 279 -270 700 281 181 16 chr13 41275284 41275404 -78469494 + HAL1 LINE L1 1543 1642 -865 17051 99 2 1 chr13 41275404 41277531 -78467367 + L1PA7 LINE L1 2963 5040 -1114 2312 100 0 0 chr13 41277531 41277832 -78467066 + AluY SINE Alu 1 301 -10 17051 99 2 1 chr13 41277832 41278945 -78465953 + L1PA7 LINE L1 5040 6150 -4 700 281 181 16 chr13 41278945 41279144 -78465754 + HAL1 LINE L1 1642 1915 -592 239 256 64 0 chr13 41279225 41279303 -78465595 + HAL1 LINE L1 2059 2141 -366 1033 180 0 6 chr13 41279323 41279495 -78465403 - AluJb SINE Alu -13 299 129 389 281 65 54 chr13 41279554 41279814 -78465084 + HAL1 LINE L1 2240 2502 -5 356 346 87 22 chr13 41279835 41280147 -78464751 - L2 LINE L2 -418 2896 2565 361 200 279 48 chr13 41280394 41280559 -78464339 - MER105 DNA DNA -1 203 1 538 255 28 14 chr13 41280781 41280926 -78463972 + MLT1I LTR MaLR 9 155 -254 7582 35 1 0 chr13 41280931 41281820 -78463078 - L1PA4 LINE L1 0 6155 5266 565 238 88 77 chr13 41281825 41282086 -78462812 + MLT1I LTR MaLR 146 409 0 648 246 14 0 chr13 41282290 41282428 -78462470 + MER97a DNA MER1_type? 7 146 -748 1109 309 97 27 chr13 41282680 41283283 -78461615 - L2 LINE L2 -269 3044 2404 378 0 0 0 chr13 41283365 41283407 -78461491 + (TAA)n Simple_repeat Simple_repeat 2 43 0 312 137 0 0 chr13 41284533 41284584 -78460314 + (CA)n Simple_repeat Simple_repeat 2 52 0 643 206 202 31 chr13 41284633 41284856 -78460042 + MIR SINE MIR 2 262 0 641 244 86 25 chr13 41285112 41285309 -78459589 + MIR SINE MIR 45 253 -9 2280 93 0 13 chr13 41285784 41286085 -78458813 - AluSg SINE Alu -13 297 1 1518 222 221 56 chr13 41286649 41287161 -78457737 - L2 LINE L2 0 3313 2887 2257 115 0 3 chr13 41287161 41287466 -78457432 + AluSq SINE Alu 2 305 -8 1518 222 221 56 chr13 41287466 41288027 -78456871 - L2 LINE L2 -426 2887 2053 630 154 9 9 chr13 41288753 41288863 -78456035 + FLAM_A SINE Alu 29 138 -4 933 237 5 14 chr13 41288944 41289159 -78455739 - MIR SINE MIR -49 213 1 200 128 0 26 chr13 41289211 41289250 -78455648 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1415 170 64 18 chr13 41289549 41289700 -78455198 - AluJo SINE Alu -17 295 152 2400 79 0 31 chr13 41289700 41290017 -78454881 - AluSx SINE Alu -5 307 1 1415 170 64 18 chr13 41290017 41290147 -78454751 - AluJo SINE Alu -160 152 1 379 179 26 0 chr13 41290458 41290536 -78454362 - MER5A DNA MER1_type -85 104 25 831 206 23 23 chr13 41290569 41290744 -78454154 - MER5B DNA MER1_type -2 176 2 875 180 67 6 chr13 41290755 41290933 -78453965 + MER5A DNA MER1_type 1 189 0 203 250 0 33 chr13 41290962 41291022 -78453876 + CT-rich Low_complexity Low_complexity 1 58 0 1330 186 36 112 chr13 41291188 41291581 -78453317 + MLT1A1 LTR MaLR 1 363 -2 4861 159 17 27 chr13 41292270 41293192 -78451706 - L1MB2 LINE L1 -4 6167 5255 933 226 25 5 chr13 41293206 41293410 -78451488 - L1MB2 LINE L1 -1269 4877 4670 980 150 20 7 chr13 41293556 41293709 -78451189 - FRAM SINE Alu -26 150 1 2532 183 77 20 chr13 41293709 41294293 -78450605 - L1M4 LINE L1 -862 5284 4668 245 288 106 42 chr13 41294306 41294542 -78450356 + L2 LINE L2 2697 2947 -367 306 276 0 0 chr13 41294553 41294629 -78450269 - L2 LINE L2 -1 3312 3237 185 341 0 0 chr13 41294801 41294845 -78450053 + L2 LINE L2 3137 3180 -92 22 35 0 0 chr13 41295818 41295847 -78449051 + AT_rich Low_complexity Low_complexity 1 29 0 490 310 26 37 chr13 41296407 41296676 -78448222 + L1ME4a LINE L1 5694 5887 -234 2348 105 0 0 chr13 41296815 41297119 -78447779 - AluSx SINE Alu -8 304 1 464 275 67 84 chr13 41297339 41297695 -78447203 - MLT1I LTR MaLR 0 409 60 857 212 26 78 chr13 41298077 41298308 -78446590 + MER20 DNA MER1_type 1 219 0 466 289 139 29 chr13 41298446 41298719 -78446179 + MLT1H LTR MaLR 232 534 -15 749 299 39 32 chr13 41298817 41299125 -78445773 - MLT1J LTR MaLR -182 329 20 209 216 59 0 chr13 41299560 41299611 -78445287 - L2 LINE L2 -492 2822 2769 1149 270 110 43 chr13 41299625 41299916 -78444982 + L1MC4a LINE L1 5307 5577 -2231 2526 57 0 0 chr13 41299916 41300213 -78444685 + AluY SINE Alu 1 297 -14 1149 270 110 43 chr13 41300213 41300528 -78444370 + L1MC4a LINE L1 5577 5954 -1854 27 49 0 0 chr13 41300616 41300657 -78444241 + AT_rich Low_complexity Low_complexity 1 41 0 1835 161 7 13 chr13 41300709 41301019 -78443879 - AluSx SINE Alu -4 308 1 340 298 96 11 chr13 41301047 41301235 -78443663 - L3 LINE CR1 -546 1031 828 2469 50 13 13 chr13 41301261 41301562 -78443336 + AluY SINE Alu 1 301 -10 244 133 33 44 chr13 41301721 41301811 -78443087 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 2206 83 14 0 chr13 41301906 41302194 -78442704 - AluY SINE Alu -19 292 1 442 210 37 9 chr13 41302471 41302585 -78442313 - L1ME4a LINE L1 -1 6376 1512 384 287 237 14 chr13 41303250 41303718 -78441180 + L2 LINE L2 2458 3030 -242 260 233 107 10 chr13 41303749 41303852 -78441046 + L1ME4a LINE L1 5979 6091 -30 359 263 91 116 chr13 41304104 41304553 -78440345 + L2 LINE L2 2835 3272 0 239 204 20 0 chr13 41304556 41304605 -78440293 - MIR SINE MIR -117 145 96 23 0 0 0 chr13 41305659 41305682 -78439216 + AT_rich Low_complexity Low_complexity 1 23 0 184 245 0 38 chr13 41305756 41305809 -78439089 - MIR3 SINE MIR -14 194 144 25 0 0 0 chr13 41306022 41306047 -78438851 + AT_rich Low_complexity Low_complexity 1 25 0 5116 80 41 25 chr13 41306047 41306774 -78438124 - SVA Other Other -4 1382 644 259 309 64 36 chr13 41306983 41307093 -78437805 - L2 LINE L2 -1 3312 3200 411 253 18 148 chr13 41308938 41309167 -78435731 - MIR SINE MIR -17 245 47 352 119 0 22 chr13 41309466 41309535 -78435363 + Alu SINE Alu 1 51 -252 2698 189 12 18 chr13 41309635 41310019 -78434879 - L1ME4a LINE L1 -5914 512 130 2527 136 8 104 chr13 41310019 41310418 -78434480 - MSTB LTR MaLR 0 426 77 1933 121 7 0 chr13 41310418 41310690 -78434208 - AluSx SINE Alu -9 303 30 2527 136 8 104 chr13 41310690 41310760 -78434138 - MSTB LTR MaLR -349 77 2 2698 189 12 18 chr13 41310760 41310871 -78434027 - L1ME4a LINE L1 -6296 130 20 324 347 28 35 chr13 41311173 41311317 -78433581 + MIR SINE MIR 33 175 -87 225 159 0 0 chr13 41311350 41311394 -78433504 + (CAT)n Simple_repeat Simple_repeat 2 45 0 209 347 21 0 chr13 41311398 41311493 -78433405 - L2 LINE L2 -1676 1638 1542 1299 219 0 0 chr13 41311863 41312105 -78432793 - MLT2C1 LTR ERVL -150 247 6 558 254 37 75 chr13 41312369 41312637 -78432261 - MIR SINE MIR -2 260 3 1912 132 10 24 chr13 41312658 41312954 -78431944 + AluSq SINE Alu 1 292 -21 707 151 126 8 chr13 41313054 41313173 -78431725 - FLAM_C SINE Alu 0 133 1 360 221 29 48 chr13 41314074 41314178 -78430720 + MLT1I LTR MaLR 25 126 -283 531 241 24 111 chr13 41315735 41315942 -78428956 - MIR SINE MIR -1 261 73 312 271 76 49 chr13 41316055 41316199 -78428699 - L2 LINE L2 0 3313 3166 270 319 55 51 chr13 41316606 41316879 -78428019 - L2 LINE L2 -457 2857 2584 256 360 27 27 chr13 41317435 41317546 -78427352 - L2 LINE L2 -981 2333 2223 206 250 125 0 chr13 41319415 41319479 -78425419 - MIR3 SINE MIR -52 156 85 1707 159 14 0 chr13 41320577 41320866 -78424032 + L1MA8 LINE L1 5995 6287 -4 314 256 0 0 chr13 41320897 41320983 -78423915 + A-rich Low_complexity Low_complexity 1 86 0 58 47 0 0 chr13 41320984 41321070 -78423828 + AT_rich Low_complexity Low_complexity 1 86 0 1002 152 79 0 chr13 41322372 41322550 -78422348 + LTR47A LTR ERVL 261 452 0 605 314 29 14 chr13 41322964 41323037 -78421861 + MIR SINE MIR 28 98 -164 446 145 0 84 chr13 41323037 41323120 -78421778 - MER116 DNA Mariner -2 78 3 605 314 29 14 chr13 41323120 41323256 -78421642 + MIR SINE MIR 98 240 -22 817 153 0 36 chr13 41323436 41323573 -78421325 - FLAM_C SINE Alu 0 133 2 192 163 0 0 chr13 41324894 41324937 -78419961 + (CTG)n Simple_repeat Simple_repeat 2 44 0 2690 20 0 0 chr13 41325066 41325366 -78419532 - AluYb8 SINE Alu -18 300 1 399 312 200 5 chr13 41325594 41325809 -78419089 + MIR SINE MIR 2 258 -4 3818 106 31 30 chr13 41325858 41326500 -78418398 - L1MA3 LINE L1 -158 6147 5505 803 304 90 24 chr13 41326669 41326942 -78417956 + LTR16B LTR ERVL 1 313 -151 3114 122 48 19 chr13 41326942 41327458 -78417440 - LTR26B LTR ERV1 0 531 1 803 304 90 24 chr13 41327458 41327605 -78417293 + LTR16B LTR ERVL 313 449 -15 1541 140 20 48 chr13 41328993 41329204 -78415694 + MER49 LTR ERV1 1 203 -720 2318 105 0 0 chr13 41329204 41329498 -78415400 - AluSx SINE Alu -18 294 1 1541 140 20 48 chr13 41329498 41329579 -78415319 + MER49 LTR ERV1 203 285 -638 392 180 0 77 chr13 41329571 41329686 -78415212 + MER4E LTR ERV1 59 168 -611 * 1008 186 90 32 chr13 41329956 41330452 -78414446 - MLT1E3 LTR MaLR 0 624 20 1308 77 0 0 chr13 41330506 41330675 -78414223 + AluY SINE Alu 137 305 -6 1516 127 72 36 chr13 41330998 41331274 -78413624 + AluJo SINE Alu 27 312 0 2180 101 0 36 chr13 41331405 41331711 -78413187 + AluSx SINE Alu 1 295 -17 520 239 113 50 chr13 41332715 41332954 -78411944 - MLT1J2 LTR MaLR 0 450 197 2185 233 16 21 chr13 41332959 41333525 -78411373 + MER119 DNA MER1_type 5 567 -16 522 287 6 24 chr13 41333520 41333687 -78411211 - MLT1J2 LTR MaLR -250 200 37 * 2068 112 7 7 chr13 41333715 41334010 -78410888 + AluSx SINE Alu 1 295 -17 211 321 104 33 chr13 41334187 41334368 -78410530 - MIR3 SINE MIR -63 145 1 368 100 25 26 chr13 41334618 41334690 -78410208 + MSTD LTR MaLR 1 76 -289 1673 245 59 65 chr13 41334699 41335610 -78409288 + L1PA12 LINE L1 37 2228 -4770 10742 125 37 9 chr13 41335611 41338141 -78406757 + L1PA10 LINE L1 3570 6168 0 1591 188 71 6 chr13 41338142 41338309 -78406589 + MSTD LTR MaLR 39 194 -202 252 0 0 0 chr13 41338309 41338337 -78406561 + (TC)n Simple_repeat Simple_repeat 1 28 0 1591 188 71 6 chr13 41338337 41338505 -78406393 + MSTD LTR MaLR 194 396 0 1118 208 100 20 chr13 41339873 41340066 -78404832 - MLT1B LTR MaLR 0 390 214 1726 177 3 19 chr13 41340066 41340377 -78404521 - AluSx SINE Alu -6 306 1 1118 208 100 20 chr13 41340377 41340524 -78404374 - MLT1B LTR MaLR -176 214 23 234 345 34 10 chr13 41340607 41340766 -78404132 - MIR SINE MIR -34 228 15 3033 119 47 43 chr13 41341188 41341381 -78403517 + LTR26B LTR ERV1 1 192 -339 2045 124 7 0 chr13 41341381 41341671 -78403227 + AluSq SINE Alu 1 292 -21 3033 119 47 43 chr13 41341671 41342006 -78402892 + LTR26B LTR ERV1 192 531 0 951 211 83 15 chr13 41342495 41342760 -78402138 + MER4D LTR ERV1 621 903 0 194 360 13 0 chr13 41344051 41344126 -78400772 + L3 LINE CR1 755 830 -747 424 262 161 13 chr13 41344156 41344305 -78400593 + MIR3 SINE MIR 15 185 -23 514 165 40 191 chr13 41344338 41344610 -78400288 + L1MC4 LINE L1 6796 7026 -1016 375 227 82 0 chr13 41344625 41344735 -78400163 + L1MC4 LINE L1 7924 8042 0 532 306 179 32 chr13 41344952 41345331 -78399567 + L3 LINE CR1 1099 1533 -44 24 0 0 0 chr13 41345623 41345647 -78399251 + AT_rich Low_complexity Low_complexity 1 24 0 339 265 22 72 chr13 41345661 41345842 -78399056 + L1M4 LINE L1 4487 4658 -1488 1019 221 53 0 chr13 41346677 41346885 -78398013 - MER58A DNA MER1_type 0 224 6 334 262 151 8 chr13 41347706 41347832 -78397066 - MIR3 SINE MIR -1 207 64 288 299 37 27 chr13 41349405 41349592 -78395306 + HAL1 LINE L1 1616 1804 -703 601 260 15 10 chr13 41349601 41349805 -78395093 + L1MA9 LINE L1 6070 6274 -38 2169 117 0 13 chr13 41349834 41350143 -78394755 + AluSg SINE Alu 1 305 -5 2033 155 3 0 chr13 41350364 41350661 -78394237 - AluSx SINE Alu -14 298 1 325 351 8 15 chr13 41350842 41350973 -78393925 + L2 LINE L2 3182 3311 -2 249 270 135 8 chr13 41351077 41351203 -78393695 + MLT1L LTR MaLR 474 615 0 1576 208 82 10 chr13 41351597 41351810 -78393088 - LTR52 LTR ERVL -1 420 224 201 94 0 0 chr13 41351810 41351842 -78393056 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 1576 208 82 10 chr13 41351842 41352018 -78392880 - LTR52 LTR ERVL -197 224 3 5603 151 16 10 chr13 41352530 41354125 -78390773 - L1PB1 LINE L1 -2 6865 5267 3136 177 79 0 chr13 41354126 41354770 -78390128 - L1PB1 LINE L1 -3412 3450 2737 181 0 69 0 chr13 41354770 41354799 -78390099 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3136 177 79 0 chr13 41354799 41354897 -78390001 - L1PB1 LINE L1 -4125 2737 2648 * 6115 195 165 8 chr13 41354894 41356687 -78388211 - L1PB1 LINE L1 -4783 2080 6 725 328 89 8 chr13 41357036 41357405 -78387493 + MLT1L LTR MaLR 7 405 -210 1550 137 160 28 chr13 41357519 41357956 -78386942 - LTR54B LTR ERV1 -2 496 2 407 266 71 13 chr13 41358174 41358328 -78386570 + MLT1H LTR MaLR 180 342 -207 834 286 51 32 chr13 41358506 41358876 -78386022 + MLT1I LTR MaLR 33 409 0 1242 223 129 88 chr13 41358876 41358957 -78385941 - L2 LINE L2 -254 3059 2983 2158 133 33 16 chr13 41358957 41359324 -78385574 - THE1C LTR MaLR -2 373 1 1242 223 129 88 chr13 41359324 41359553 -78385345 - L2 LINE L2 -330 2983 2765 1737 151 14 7 chr13 41359553 41359831 -78385067 - AluJo SINE Alu -32 280 1 1242 223 129 88 chr13 41359831 41360143 -78384755 - L2 LINE L2 -548 2765 2420 440 287 57 29 chr13 41361151 41361405 -78383493 + L2 LINE L2 2760 3018 -254 253 222 63 0 chr13 41361510 41361573 -78383325 - L2 LINE L2 -557 2757 2691 236 175 0 0 chr13 41361568 41361608 -78383290 + L2 LINE L2 3027 3066 -247 * 2585 150 6 8 chr13 41361649 41362117 -78382781 - MER41B LTR ERV1 -39 596 130 251 289 31 38 chr13 41362323 41362482 -78382416 - LTR33 LTR ERVL -331 190 33 312 324 199 12 chr13 41362512 41362768 -78382130 + L2 LINE L2 3001 3304 -9 245 222 19 0 chr13 41362768 41362822 -78382076 + GA-rich Low_complexity Low_complexity 3 57 0 310 354 31 23 chr13 41363019 41363149 -78381749 - MIR SINE MIR -71 191 61 261 0 0 0 chr13 41363791 41363820 -78381078 + (TG)n Simple_repeat Simple_repeat 2 30 0 1000 233 163 96 chr13 41364523 41365076 -78379822 + MLT1G1 LTR MaLR 1 590 -5 414 264 56 71 chr13 41365719 41365916 -78378982 - L2 LINE L2 -3 3310 3117 1583 116 6 142 chr13 41366790 41367165 -78377733 - AluSg1 SINE Alu 0 309 1 191 250 19 39 chr13 41367622 41367674 -78377224 + MIR SINE MIR 47 97 -165 260 252 94 24 chr13 41368814 41368941 -78375957 - MER103 DNA DNA -20 146 11 223 265 88 98 chr13 41370631 41370733 -78374165 - MIR3 SINE MIR -105 103 3 823 93 106 56 chr13 41370948 41371109 -78373789 - MER44D DNA MER2_type -4 701 533 4118 118 52 4 chr13 41371109 41371827 -78373071 - Tigger3(Golem) DNA MER2_type -1 3028 2277 438 169 0 0 chr13 41371820 41371891 -78373007 - Tigger3(Golem) DNA MER2_type -2923 106 36 * 534 250 79 0 chr13 41371951 41372103 -78372795 - MER44D DNA MER2_type -171 438 5 765 234 72 63 chr13 41372113 41372446 -78372452 + MER46C DNA MER2_type 3 338 0 628 235 6 0 chr13 41372475 41372637 -78372261 - HAL1b LINE L1 -7 1341 1179 615 263 122 62 chr13 41372683 41372810 -78372088 - HAL1b LINE L1 -323 1025 907 3786 200 19 65 chr13 41372810 41373826 -78371072 + LTR5 LTR ERVK 1 969 0 615 263 122 62 chr13 41373826 41374397 -78370501 - HAL1b LINE L1 -441 907 285 2956 76 3 0 chr13 41374447 41374801 -78370097 - THE1A LTR MaLR 0 355 1 203 267 0 0 chr13 41374845 41374905 -78369993 + T-rich Low_complexity Low_complexity 2 61 0 329 309 115 7 chr13 41374972 41375111 -78369787 + L2 LINE L2 3160 3313 0 313 252 97 32 chr13 41376419 41376440 -78368458 - L1MA10 LINE L1 -1 6333 6313 3273 212 85 24 chr13 41376440 41377071 -78367827 - L1ME1 LINE L1 -12 6154 5456 1766 162 0 27 chr13 41377071 41377208 -78367690 + AluJo SINE Alu 1 140 -172 2200 81 22 0 chr13 41377208 41377511 -78367387 + AluSc SINE Alu 1 309 0 1766 162 0 27 chr13 41377511 41377668 -78367230 + AluJo SINE Alu 140 288 -24 3273 212 85 24 chr13 41377668 41377884 -78367014 - L1ME1 LINE L1 -710 5456 5255 1974 174 47 20 chr13 41377884 41378293 -78366605 - LTR52 LTR ERVL -1 420 1 1979 123 4 7 chr13 41378349 41378626 -78366272 - AluSq SINE Alu -37 276 1 266 215 46 31 chr13 41379103 41379168 -78365730 - L2 LINE L2 -23 3249 3184 5172 68 18 2 chr13 41379770 41380400 -78364498 + L1PA7 LINE L1 5513 6152 -2 1121 323 167 23 chr13 41380437 41381406 -78363492 + L3 LINE CR1 367 1519 -58 516 275 64 64 chr13 41381537 41381559 -78363339 - MIR SINE MIR -25 237 216 330 87 0 0 chr13 41381559 41381605 -78363293 + (TA)n Simple_repeat Simple_repeat 1 46 0 516 275 64 64 chr13 41381605 41381713 -78363185 - MIR SINE MIR -46 216 104 1875 194 41 22 chr13 41381713 41382080 -78362818 + MLT1A2 LTR MaLR 1 374 0 516 275 64 64 chr13 41382080 41382166 -78362732 - MIR SINE MIR -157 105 20 298 154 115 91 chr13 41382958 41383071 -78361827 - MLT1I LTR MaLR 0 549 275 2894 131 41 5 chr13 41383441 41383852 -78361046 + MSTB LTR MaLR 1 426 0 236 204 0 37 chr13 41383853 41383907 -78360991 - MLT1L LTR MaLR -555 60 9 467 332 62 12 chr13 41384058 41384302 -78360596 - MIR SINE MIR -6 256 1 306 346 68 0 chr13 41384351 41384484 -78360414 - L3 LINE CR1 -267 1310 1169 1249 188 71 23 chr13 41384630 41384896 -78360002 + AluJo SINE Alu 1 279 -33 231 88 0 0 chr13 41384899 41384933 -78359965 + (TAA)n Simple_repeat Simple_repeat 1 34 0 358 301 45 30 chr13 41385080 41385259 -78359639 + MER20B DNA MER1_type 34 219 0 418 290 107 45 chr13 41386332 41386556 -78358342 + MIR SINE MIR 1 238 -24 763 307 53 0 chr13 41386562 41386790 -78358108 - MIR SINE MIR -21 241 2 359 310 123 77 chr13 41387132 41387296 -78357602 - L3 LINE CR1 -407 1170 1015 2237 125 0 0 chr13 41387296 41387607 -78357291 - AluSx SINE Alu -1 311 1 359 310 123 77 chr13 41387607 41387832 -78357066 - L3 LINE CR1 -562 1015 763 343 65 0 0 chr13 41387836 41387882 -78357016 - MADE1 DNA Mariner 0 80 35 30 0 0 0 chr13 41387882 41387912 -78356986 + AT_rich Low_complexity Low_complexity 1 30 0 291 43 0 5 chr13 41387928 41387975 -78356923 - MADE1 DNA Mariner -42 38 4 534 363 144 5 chr13 41388059 41388428 -78356470 + L3 LINE CR1 236 655 -922 248 267 55 73 chr13 41388927 41389092 -78355806 - L2 LINE L2 -103 3210 3049 212 256 0 0 chr13 41389340 41389383 -78355515 + L2 LINE L2 3267 3309 -4 2143 103 7 3 chr13 41389534 41389826 -78355072 + AluSg SINE Alu 1 293 -17 303 350 37 25 chr13 41390001 41390164 -78354734 - L2 LINE L2 -211 3061 2897 3706 158 33 16 chr13 41390181 41390847 -78354051 + L1MC2 LINE L1 5658 6334 -10 301 319 123 23 chr13 41390955 41391297 -78353601 - L2 LINE L2 -468 2846 2471 561 277 85 68 chr13 41392026 41392496 -78352402 - MLT1J LTR MaLR -33 478 1 390 245 149 27 chr13 41394612 41394800 -78350098 - L1ME LINE L1 -438 5683 5473 299 262 193 22 chr13 41395056 41395331 -78349567 - L1ME4a LINE L1 -1 6120 5799 846 168 90 18 chr13 41395502 41395669 -78349229 + MER20 DNA MER1_type 29 207 -12 406 277 93 63 chr13 41395692 41396018 -78348880 + MLT1H LTR MaLR 96 547 -2 399 223 29 39 chr13 41396036 41396139 -78348759 - MIR SINE MIR -160 102 1 362 270 132 11 chr13 41396147 41396321 -78348577 - L1ME4a LINE L1 -338 5783 5589 31 0 0 0 chr13 41396564 41396595 -78348303 + AT_rich Low_complexity Low_complexity 1 31 0 582 253 129 10 chr13 41397221 41397415 -78347483 + MER45C DNA AcHobo 13 229 -724 929 188 41 41 chr13 41397513 41397710 -78347188 + AluJo SINE Alu 109 305 -7 723 327 44 17 chr13 41398845 41399206 -78345692 - MLT1I LTR MaLR 0 409 39 188 280 56 84 chr13 41399610 41399860 -78345038 + L2 LINE L2 2848 3090 -182 1827 129 84 19 chr13 41399877 41400187 -78344711 + MER44D DNA MER2_type 1 600 -9 208 275 188 0 chr13 41400249 41400329 -78344569 + L2 LINE L2 3160 3254 -18 380 245 21 0 chr13 41401366 41401460 -78343438 + MER94 DNA DNA 39 134 0 198 243 0 108 chr13 41401566 41401640 -78343258 - MIR3 SINE MIR -1 207 142 * 297 337 83 12 chr13 41401636 41401706 -78343192 + MER5A DNA MER1_type 9 73 -116 2451 94 0 0 chr13 41401706 41402015 -78342883 + AluSp SINE Alu 1 309 -4 297 337 83 12 chr13 41402015 41402113 -78342785 + MER5A DNA MER1_type 73 189 0 197 175 53 53 chr13 41402120 41402177 -78342721 - MIR SINE MIR -119 143 87 300 291 146 36 chr13 41402270 41402435 -78342463 + MIR3 SINE MIR 23 205 -3 2720 148 16 73 chr13 41402807 41403299 -78341599 + MLT2C2 LTR ERVL 1 464 0 324 263 12 0 chr13 41403441 41403521 -78341377 + L2 LINE L2 3188 3268 -4 801 281 23 30 chr13 41403761 41404024 -78340874 + MIR SINE MIR 2 262 0 867 199 46 7 chr13 41404108 41404259 -78340639 + FRAM SINE Alu 2 158 -18 1953 157 49 35 chr13 41404639 41405009 -78339889 + THE1C LTR MaLR 1 375 0 1645 148 73 20 chr13 41405037 41405158 -78339740 - L1MB7 LINE L1 -214 5970 5857 2419 144 3 19 chr13 41405158 41405527 -78339371 - MER47A DNA MER2_type 0 366 4 1645 148 73 20 chr13 41405527 41405708 -78339190 - L1MB7 LINE L1 -327 5857 5652 525 263 160 30 chr13 41406444 41406756 -78338142 + MLT1H LTR MaLR 114 498 -57 207 0 0 0 chr13 41406756 41406779 -78338119 + (CAA)n Simple_repeat Simple_repeat 2 24 0 525 263 160 30 chr13 41406779 41406846 -78338052 + MLT1H LTR MaLR 498 555 0 1064 169 33 5 chr13 41407306 41407490 -78337408 + MER5A DNA MER1_type 1 189 0 1517 201 85 13 chr13 41407498 41407816 -78337082 - MER58B DNA MER1_type 0 341 1 376 296 70 9 chr13 41409050 41409165 -78335733 - MIR SINE MIR -128 134 13 643 291 84 0 chr13 41409223 41409436 -78335462 - MIR SINE MIR -27 235 5 492 299 112 5 chr13 41409433 41409647 -78335251 + MIR SINE MIR 26 262 0 * 711 146 28 97 chr13 41409734 41409878 -78335020 - AluJb SINE Alu -177 135 2 888 228 52 77 chr13 41409892 41410295 -78334603 - L1ME4a LINE L1 -19 6102 5710 420 271 49 42 chr13 41410372 41410516 -78334382 + MIR SINE MIR 48 192 -70 535 255 42 75 chr13 41410531 41410770 -78334128 - L1ME4a LINE L1 -479 5642 5412 26 0 0 0 chr13 41411735 41411761 -78333137 + AT_rich Low_complexity Low_complexity 1 26 0 587 114 13 0 chr13 41412952 41413031 -78331867 - MADE1 DNA Mariner 0 80 1 261 320 78 31 chr13 41413298 41413426 -78331472 + L2 LINE L2 3139 3272 0 236 351 53 47 chr13 41413993 41414164 -78330734 - MIR SINE MIR -14 248 77 180 0 0 0 chr13 41416602 41416622 -78328276 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 2227 111 7 0 chr13 41416726 41417032 -78327866 - AluY SINE Alu -3 308 1 322 135 0 40 chr13 41417419 41417493 -78327405 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 2158 128 7 0 chr13 41417510 41417816 -78327082 - AluSx SINE Alu -4 308 1 700 200 14 98 chr13 41419652 41419867 -78325031 - MER3 DNA MER1_type -7 202 6 209 341 77 0 chr13 41419981 41420072 -78324826 - MIR SINE MIR -75 133 36 753 294 75 27 chr13 41420953 41421364 -78323534 + L1ME LINE L1 3476 3906 -2240 429 345 60 42 chr13 41421457 41421842 -78323056 + MLT1I LTR MaLR 16 407 -2 749 287 90 50 chr13 41421848 41422210 -78322688 + L1ME LINE L1 3999 4345 -1801 204 40 0 0 chr13 41422210 41422235 -78322663 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 943 144 0 0 chr13 41422242 41422367 -78322531 - FLAM_C SINE Alu -8 125 1 749 287 90 50 chr13 41422367 41423057 -78321841 + L1ME LINE L1 4350 5207 -939 292 278 220 19 chr13 41423090 41423261 -78321637 + L1ME LINE L1 5325 5460 -702 495 0 0 0 chr13 41423261 41423316 -78321582 + (TA)n Simple_repeat Simple_repeat 1 55 0 292 278 220 19 chr13 41423316 41423403 -78321495 + L1ME LINE L1 5460 5635 -527 456 178 262 9 chr13 41423659 41423766 -78321132 - MER45 DNA AcHobo 0 1581 1448 625 283 93 61 chr13 41423925 41424367 -78320531 + L1MC4a LINE L1 5517 5972 -1836 1313 235 91 20 chr13 41424369 41424710 -78320188 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr13 41424825 41424850 -78320048 + AT_rich Low_complexity Low_complexity 1 25 0 230 295 125 54 chr13 41425171 41425283 -78319615 - L2 LINE L2 -17 3255 3136 303 280 85 44 chr13 41425808 41425966 -78318932 + MIR SINE MIR 38 207 -55 402 21 0 0 chr13 41426670 41426717 -78318181 + (CA)n Simple_repeat Simple_repeat 2 48 0 302 208 0 0 chr13 41427448 41427501 -78317397 + MER91 DNA MER1_type 1 53 -87 2369 135 30 30 chr13 41427593 41427957 -78316941 - THE1B LTR MaLR 0 364 1 240 35 0 0 chr13 41429201 41429230 -78315668 + (CA)n Simple_repeat Simple_repeat 1 29 0 586 201 90 155 chr13 41429255 41429609 -78315289 - LTR37A LTR ERV1 -5 421 91 5421 155 9 12 chr13 41429679 41430567 -78314331 + MER4D LTR ERV1 2 886 -17 234 250 78 0 chr13 41430778 41430842 -78314056 - MIR3 SINE MIR -7 201 133 24 0 0 0 chr13 41431638 41431662 -78313236 + AT_rich Low_complexity Low_complexity 1 24 0 1920 169 20 48 chr13 41432271 41432625 -78312273 - MER2 DNA MER2_type 0 344 1 285 151 0 0 chr13 41432996 41433049 -78311849 + CT-rich Low_complexity Low_complexity 3 55 0 251 291 67 15 chr13 41433323 41433457 -78311441 - L1MDa LINE L1 -4649 1891 1751 355 284 19 43 chr13 41433460 41433622 -78311276 + L2 LINE L2 3151 3308 -5 195 350 70 0 chr13 41433696 41433796 -78311102 + L2 LINE L2 2648 2754 -560 1817 180 0 6 chr13 41433845 41434156 -78310742 + AluJo SINE Alu 1 309 -3 278 271 54 39 chr13 41434224 41434353 -78310545 + L2 LINE L2 2954 3084 -188 308 260 173 40 chr13 41434407 41434580 -78310318 - L2 LINE L2 -1 3312 3117 23 68 0 0 chr13 41434854 41434898 -78310000 + AT_rich Low_complexity Low_complexity 1 44 0 287 203 29 29 chr13 41435118 41435187 -78309711 - MLT1K LTR MaLR -67 521 453 * 339 314 21 68 chr13 41435168 41435359 -78309539 - MLT1K LTR MaLR -404 184 3 1019 234 122 32 chr13 41435393 41435803 -78309095 - Charlie1b DNA MER1_type -31 492 46 * 1160 159 72 120 chr13 41435801 41435937 -78308961 - MLT1D LTR MaLR -188 317 176 2553 71 0 0 chr13 41435937 41436247 -78308651 - AluY SINE Alu -1 310 1 1160 159 72 120 chr13 41436247 41436443 -78308455 - MLT1D LTR MaLR -329 176 1 431 197 114 30 chr13 41436458 41436590 -78308308 + LTR33 LTR ERVL 370 512 -9 4019 177 49 42 chr13 41437101 41437975 -78306923 - MER49 LTR ERV1 -11 912 33 1861 156 7 0 chr13 41438487 41438801 -78306097 - AluSx SINE Alu 0 316 1 252 314 112 37 chr13 41439644 41439832 -78305066 + L2 LINE L2 2588 2789 -525 443 333 17 0 chr13 41439985 41440105 -78304793 - L2 LINE L2 0 3272 3151 180 0 0 0 chr13 41440303 41440323 -78304575 + (TA)n Simple_repeat Simple_repeat 2 21 0 541 303 32 83 chr13 41440813 41440952 -78303946 + L1MEc LINE L1 790 935 -5461 2123 112 10 3 chr13 41440952 41441248 -78303650 - AluSp SINE Alu -15 298 1 541 303 32 83 chr13 41441248 41441481 -78303417 + L1MEc LINE L1 935 1143 -5253 758 282 63 32 chr13 41441643 41442118 -78302780 + L1MDa LINE L1 1259 1748 -4792 2195 129 3 3 chr13 41442167 41442478 -78302420 - AluSq SINE Alu -2 311 1 783 324 76 56 chr13 41443451 41444098 -78300800 - L2 LINE L2 -253 3060 2377 323 330 52 88 chr13 41444131 41444277 -78300621 + L2 LINE L2 2955 3105 -167 1764 169 43 10 chr13 41444277 41444578 -78300320 - AluSx SINE Alu -1 311 1 323 330 52 88 chr13 41444578 41444761 -78300137 + L2 LINE L2 3105 3272 0 4010 121 55 63 chr13 41444997 41446268 -78298630 - pTR5 LTR ERV1 -143 2295 281 367 239 171 8 chr13 41446451 41446568 -78298330 + MIR SINE MIR 5 140 -122 243 319 0 0 chr13 41446642 41446711 -78298187 + MIR SINE MIR 163 231 -31 2187 105 34 0 chr13 41447238 41447533 -78297365 + AluSx SINE Alu 1 305 -7 9904 25 5 1 chr13 41447754 41449624 -78295274 - L1PA3 LINE L1 0 6155 4282 12193 29 1 0 chr13 41449624 41451058 -78293840 + L1PA3 LINE L1 2844 4278 -1868 302 348 50 7 chr13 41451330 41451471 -78293427 + L3 LINE CR1 1417 1563 -14 616 178 12 0 chr13 41451581 41451696 -78293202 + MER3 DNA MER1_type 7 2337 0 198 118 29 0 chr13 41451780 41451814 -78293084 + L2 LINE L2 3263 3297 -16 1916 155 12 108 chr13 41452767 41453194 -78291704 + MLT1B LTR MaLR 5 390 0 234 91 0 0 chr13 41454263 41454296 -78290602 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 186 62 0 62 chr13 41454613 41454661 -78290237 + (TTTAA)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr13 41454693 41454716 -78290182 + AT_rich Low_complexity Low_complexity 1 23 0 207 213 0 21 chr13 41454774 41454821 -78290077 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 544 270 49 5 chr13 41455284 41455469 -78289429 - L1ME LINE L1 -340 5781 5589 367 319 25 0 chr13 41455972 41456091 -78288807 - L2 LINE L2 -9 3263 3142 467 294 34 67 chr13 41458034 41458272 -78286626 - MIR SINE MIR 0 262 33 1691 153 162 86 chr13 41459956 41460387 -78284511 - MLT1C LTR MaLR -3 464 1 475 275 21 7 chr13 41460387 41460529 -78284369 + MIR SINE MIR 119 262 0 554 216 15 30 chr13 41461424 41461558 -78283340 + FLAM_A SINE Alu 1 132 -1 348 268 9 18 chr13 41461599 41461711 -78283187 + HsTC2 DNA Tc2 1788 1898 0 321 269 39 0 chr13 41462923 41463001 -78281897 - L2 LINE L2 -43 3229 3149 2084 106 22 0 chr13 41464054 41464352 -78280546 + AluSg SINE Alu 1 304 0 483 303 108 28 chr13 41464690 41465075 -78279823 - L2 LINE L2 -193 3079 2652 2309 140 6 105 chr13 41465075 41465553 -78279345 - MSTB1 LTR MaLR 0 432 2 483 303 108 28 chr13 41465553 41465606 -78279292 - L2 LINE L2 -620 2652 2605 1108 188 47 24 chr13 41465797 41466010 -78278888 + MER20 DNA MER1_type 1 218 -1 2296 144 18 73 chr13 41467842 41468280 -78276618 - MLT2D LTR ERVL 0 414 1 633 312 55 13 chr13 41468689 41468926 -78275972 - MIR SINE MIR -10 252 6 944 293 56 68 chr13 41470949 41470992 -78273906 - MLT1K LTR MaLR -12 576 534 2445 130 28 0 chr13 41470992 41471346 -78273552 + THE1B LTR MaLR 1 364 0 944 293 56 68 chr13 41471346 41471875 -78273023 - MLT1K LTR MaLR -54 534 11 22 35 0 0 chr13 41473317 41473346 -78271552 + AT_rich Low_complexity Low_complexity 1 29 0 1258 197 38 4 chr13 41474018 41474282 -78270616 + L1MA4 LINE L1 6022 6294 -6 23 0 0 0 chr13 41474747 41474770 -78270128 + AT_rich Low_complexity Low_complexity 1 23 0 201 317 81 56 chr13 41474923 41475084 -78269814 + MIR SINE MIR 92 256 -6 4426 214 63 68 chr13 41476108 41477280 -78267618 + L1MC4a LINE L1 6272 7436 -372 2415 93 0 0 chr13 41477280 41477591 -78267307 + AluY SINE Alu 1 311 0 4426 214 63 68 chr13 41477591 41477963 -78266935 + L1MC4a LINE L1 7436 7808 0 1727 206 61 47 chr13 41478047 41478360 -78266538 - MLT1D LTR MaLR -7 498 174 2358 94 7 0 chr13 41478360 41478667 -78266231 - AluSp SINE Alu -4 309 1 1727 206 61 47 chr13 41478667 41478844 -78266054 - MLT1D LTR MaLR -331 174 1 551 301 30 12 chr13 41479640 41479806 -78265092 - MER5B DNA MER1_type -8 170 2 821 282 32 51 chr13 41480236 41480708 -78264190 + LTR16B LTR ERVL 1 463 -1 559 255 76 6 chr13 41480911 41481068 -78263830 - MER5B DNA MER1_type -6 172 5 23 0 0 0 chr13 41483982 41484005 -78260893 + AT_rich Low_complexity Low_complexity 1 23 0 233 219 14 14 chr13 41484067 41484140 -78260758 + L1ME LINE L1 5643 5715 -406 * 29139 115 10 57 chr13 41484134 41490588 -78254310 - L1PA7 LINE L1 -3 6151 12 212 342 162 0 chr13 41491130 41491247 -78253651 - MIR SINE MIR -95 167 32 23 0 0 0 chr13 41491850 41491873 -78253025 + AT_rich Low_complexity Low_complexity 1 23 0 1861 141 42 0 chr13 41493521 41493805 -78251093 - AluSx SINE Alu -16 296 1 1264 237 132 20 chr13 41494620 41495068 -78249830 + MLT1D LTR MaLR 8 505 0 411 315 45 94 chr13 41495394 41495661 -78249237 - L2 LINE L2 0 3272 3019 314 261 129 54 chr13 41496582 41496986 -78247912 - L1MEc LINE L1 -2833 3296 2833 2117 212 43 25 chr13 41496986 41497496 -78247402 - LTR40a LTR ERVL 0 519 1 314 261 129 54 chr13 41497496 41497681 -78247217 - L1MEc LINE L1 -3296 2833 2663 352 293 73 7 chr13 41498386 41498536 -78246362 - L1MEc LINE L1 -4656 1654 1495 281 241 0 0 chr13 41498538 41498596 -78246302 - L1MEc LINE L1 -5447 672 615 535 320 123 5 chr13 41498653 41499050 -78245848 - L1MEc LINE L1 -5586 533 90 487 242 131 75 chr13 41499064 41499370 -78245528 + MLT1J LTR MaLR 141 463 -48 243 329 163 50 chr13 41501845 41502325 -78242573 + L2 LINE L2 2008 2541 -773 563 308 0 0 chr13 41502461 41502628 -78242270 + MIR SINE MIR 65 230 -32 216 269 19 0 chr13 41502649 41502701 -78242197 + CT-rich Low_complexity Low_complexity 1 53 0 234 143 18 18 chr13 41502730 41502786 -78242112 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 29138 117 16 78 chr13 41503129 41508881 -78236017 - L1P LINE L1 -743 5403 13 2153 8 0 0 chr13 41509598 41509842 -78235056 - L1PA2 LINE L1 -1 6154 5911 2309 12 0 0 chr13 41509842 41510163 -78234735 + L1P LINE L1 5107 5427 -728 223 329 0 0 chr13 41511637 41511710 -78233188 + (CAG)n Simple_repeat Simple_repeat 3 75 0 289 291 58 17 chr13 41511838 41512010 -78232888 + LTR33A LTR ERVL 329 507 -16 191 349 75 0 chr13 41513800 41513906 -78230992 - MIR SINE MIR -51 211 98 374 199 202 71 chr13 41514355 41514511 -78230387 + L1ME4a LINE L1 5796 5930 -191 1761 180 7 10 chr13 41514511 41514817 -78230081 + AluJo SINE Alu 7 311 -1 374 199 202 71 chr13 41514817 41514860 -78230038 + L1ME4a LINE L1 5930 5966 -155 1310 171 4 17 chr13 41514860 41515099 -78229799 - MER46A DNA MER2_type 0 236 1 374 199 202 71 chr13 41515099 41515180 -78229718 + L1ME4a LINE L1 5966 6114 -7 21 36 0 0 chr13 41515190 41515218 -78229680 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 41515302 41515332 -78229566 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 41515651 41515671 -78229227 + (T)n Simple_repeat Simple_repeat 1 20 0 2266 50 0 57 chr13 41516013 41516348 -78228550 + AluY SINE Alu 1 318 0 273 255 57 92 chr13 41516993 41517134 -78227764 + MIR SINE MIR 123 258 -4 776 173 18 36 chr13 41517323 41517491 -78227407 - MER20 DNA MER1_type -54 165 1 240 241 0 17 chr13 41517701 41517759 -78227139 + L2 LINE L2 2999 3055 -217 475 283 181 22 chr13 41518724 41518950 -78225948 - MIR SINE MIR 0 262 1 713 291 40 14 chr13 41519252 41519475 -78225423 - MIR SINE MIR 0 262 34 444 261 24 111 chr13 41519560 41519767 -78225131 - MER5A DNA MER1_type 0 189 1 297 0 0 0 chr13 41521114 41521147 -78223751 + (TG)n Simple_repeat Simple_repeat 2 34 0 204 271 140 28 chr13 41522258 41522365 -78222533 + L2 LINE L2 3193 3311 -2 1587 202 19 19 chr13 41522456 41522975 -78221923 + MER97c DNA MER1_type? 1 588 -306 2861 191 23 0 chr13 41523162 41523504 -78221394 - L1PA16 LINE L1 -24 6142 5780 357 24 0 0 chr13 41523504 41523546 -78221352 + (TG)n Simple_repeat Simple_repeat 2 43 0 2861 191 23 0 chr13 41523546 41523775 -78221123 - L1PA16 LINE L1 -386 5780 5558 2436 252 39 0 chr13 41523775 41524413 -78220485 - L1ME1 LINE L1 -56 6110 5448 1692 265 75 18 chr13 41524809 41525357 -78219541 - MLT1E LTR MaLR 0 593 15 359 261 346 0 chr13 41525366 41525496 -78219402 + MER96 DNA MER1_type 1 175 0 228 291 87 58 chr13 41525758 41525861 -78219037 + MER5A DNA MER1_type 1 106 -83 2011 120 0 24 chr13 41526737 41527028 -78217870 + AluSx SINE Alu 1 315 0 210 32 0 32 chr13 41527028 41527059 -78217839 + (TAA)n Simple_repeat Simple_repeat 2 180 0 181 224 52 52 chr13 41529968 41530026 -78214872 - L2 LINE L2 -6 3266 3209 207 0 0 0 chr13 41530348 41530371 -78214527 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2151 139 7 0 chr13 41530391 41530701 -78214197 + AluSx SINE Alu 1 312 0 542 301 46 6 chr13 41530796 41530969 -78213929 + MIR SINE MIR 7 186 -76 2643 107 12 22 chr13 41531136 41531538 -78213360 + L1PA16 LINE L1 5760 6157 -9 814 255 29 31 chr13 41531719 41532142 -78212756 + L1ME3A LINE L1 5721 6131 -31 273 330 126 51 chr13 41533492 41533733 -78211165 + L2 LINE L2 2288 2510 -762 1992 117 125 67 chr13 41533733 41534134 -78210764 + MSTA LTR MaLR 1 424 -4 273 330 126 51 chr13 41534134 41534742 -78210156 + L2 LINE L2 2510 3223 -49 1017 251 5 0 chr13 41534839 41535062 -78209836 + MER58A DNA MER1_type 1 224 0 708 252 105 55 chr13 41535301 41535778 -78209120 + MLT1J LTR MaLR 5 505 -6 2265 179 44 72 chr13 41537220 41537790 -78207108 + MLT2B3 LTR ERVL 1 554 0 191 266 25 76 chr13 41538164 41538243 -78206655 + MIR SINE MIR 108 182 -80 344 300 130 20 chr13 41538774 41538974 -78205924 - MIR SINE MIR -18 244 23 682 258 51 23 chr13 41538990 41539207 -78205691 + MIR SINE MIR 40 262 0 323 365 60 16 chr13 41539230 41539545 -78205353 + L2 LINE L2 2153 2481 -833 26 30 0 0 chr13 41539660 41539693 -78205205 + AT_rich Low_complexity Low_complexity 1 33 0 668 211 0 12 chr13 41539693 41539854 -78205044 - MER96B DNA MER1_type? -258 159 1 1789 167 48 14 chr13 41540380 41540733 -78204165 + MLT1A1 LTR MaLR 1 365 0 2133 125 0 26 chr13 41541006 41541319 -78203579 + AluSx SINE Alu 1 305 -7 271 315 12 12 chr13 41542239 41542356 -78202542 + MIR SINE MIR 3 120 -88 1649 136 0 12 chr13 41543430 41543680 -78201218 - AluJo SINE Alu -21 291 45 2208 128 126 5 chr13 41544437 41544819 -78200079 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr13 41544912 41544941 -78199957 + AT_rich Low_complexity Low_complexity 1 29 0 180 176 0 0 chr13 41545417 41545451 -78199447 + (CATA)n Simple_repeat Simple_repeat 2 35 0 281 317 113 36 chr13 41545514 41545735 -78199163 + L2 LINE L2 2811 3048 -224 254 71 0 24 chr13 41545978 41546020 -78198878 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 227 196 22 0 chr13 41547148 41547194 -78197704 - MIR SINE MIR -114 148 102 549 224 82 20 chr13 41547395 41547542 -78197356 + MIR SINE MIR 3 158 -104 285 239 228 58 chr13 41548306 41548661 -78196237 - MLT1L LTR MaLR -138 477 1 998 150 0 0 chr13 41548808 41548955 -78195943 + AluSq SINE Alu 151 297 -16 377 336 8 16 chr13 41549005 41549140 -78195758 - MIR3 SINE MIR -31 177 43 1849 113 77 39 chr13 41549214 41549551 -78195347 - THE1B LTR MaLR -12 352 3 11805 92 5 4 chr13 41549553 41551132 -78193766 - THE1B-int LTR MaLR 0 1580 1 2134 118 29 31 chr13 41551132 41551481 -78193417 - THE1B LTR MaLR 0 364 17 426 347 58 11 chr13 41551660 41551850 -78193048 + MIR SINE MIR 57 255 -7 25 51 0 0 chr13 41552578 41552617 -78192281 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr13 41552722 41552750 -78192148 + AT_rich Low_complexity Low_complexity 1 28 0 414 248 169 23 chr13 41553252 41553554 -78191344 + L1MEc LINE L1 797 1142 -5254 723 256 24 71 chr13 41553636 41554386 -78190512 + L1ME LINE L1 710 1462 -4848 897 45 18 0 chr13 41554774 41554885 -78190013 - L1PA10 LINE L1 -4 6164 6052 728 286 67 37 chr13 41554995 41555666 -78189232 - L1M4 LINE L1 -1703 4443 3753 270 0 0 0 chr13 41555902 41555932 -78188966 + (T)n Simple_repeat Simple_repeat 1 30 0 365 276 76 11 chr13 41557536 41557721 -78187177 - L1M3 LINE L1 -718 5450 5254 346 305 41 7 chr13 41557980 41558272 -78186626 + L1ME LINE L1 4291 4592 -1537 229 254 106 7 chr13 41558902 41559044 -78185854 + L1ME LINE L1 5275 5430 -719 1182 90 145 47 chr13 41559335 41559569 -78185329 + MLT1B LTR MaLR 1 257 -133 830 150 90 6 chr13 41559732 41559899 -78184999 + MLT1B LTR MaLR 210 390 0 884 252 32 5 chr13 41559922 41560140 -78184758 - MER58A DNA MER1_type 0 224 1 1872 261 173 28 chr13 41560586 41561629 -78183269 + L2 LINE L2 2115 3313 0 848 285 21 0 chr13 41561713 41561948 -78182950 + MIR SINE MIR 21 260 -2 502 276 83 7 chr13 41562842 41562987 -78181911 - L2 LINE L2 -8 3264 3109 2490 112 22 0 chr13 41563142 41563498 -78181400 + THE1B LTR MaLR 1 364 0 216 196 20 0 chr13 41563620 41563671 -78181227 + L2 LINE L2 3262 3313 0 380 233 58 10 chr13 41565003 41565106 -78179792 - MIR SINE MIR -50 212 105 852 196 63 23 chr13 41565108 41565532 -78179366 + MLT1D LTR MaLR 1 505 0 258 289 21 91 chr13 41565597 41565784 -78179114 - MIR SINE MIR -17 245 72 237 163 0 0 chr13 41567085 41567134 -78177764 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 270 143 0 0 chr13 41567271 41567313 -78177585 + 5S rRNA rRNA 1 42 -79 186 43 0 0 chr13 41567379 41567402 -78177496 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1597 160 21 42 chr13 41567405 41567693 -78177205 - AluJo SINE Alu -30 282 1 2295 106 3 0 chr13 41567852 41568163 -78176735 + AluSx SINE Alu 1 312 0 324 0 0 0 chr13 41568170 41568206 -78176692 + (TA)n Simple_repeat Simple_repeat 2 37 0 1775 149 0 0 chr13 41570738 41571006 -78173892 + AluSx SINE Alu 38 305 -7 282 260 0 27 chr13 41571018 41571091 -78173807 - MER5A DNA MER1_type -24 165 95 782 301 45 4 chr13 41571718 41571964 -78172934 + MIR SINE MIR 7 262 0 387 0 0 0 chr13 41572943 41572986 -78171912 + (TG)n Simple_repeat Simple_repeat 2 44 0 198 405 24 0 chr13 41573094 41573178 -78171720 - L2 LINE L2 -608 2706 2621 1912 160 7 3 chr13 41573458 41573751 -78171147 + AluJb SINE Alu 1 294 -18 330 115 0 0 chr13 41573753 41573805 -78171093 + (TG)n Simple_repeat Simple_repeat 1 52 0 413 291 17 51 chr13 41574781 41574939 -78169959 + MIR SINE MIR 20 172 -61 31 0 0 0 chr13 41575154 41575185 -78169713 + AT_rich Low_complexity Low_complexity 1 31 0 2123 109 10 3 chr13 41575195 41575489 -78169409 + AluSx SINE Alu 1 296 -16 2018 114 3 20 chr13 41575573 41575871 -78169027 + AluSq SINE Alu 1 293 -20 504 287 117 24 chr13 41575878 41576341 -78168557 + L1M4 LINE L1 2318 2823 -3323 384 293 64 80 chr13 41576673 41576984 -78167914 - L1M4 LINE L1 -1300 4846 4541 911 298 111 17 chr13 41577385 41577989 -78166909 - L1M4 LINE L1 -1830 4316 3656 2202 187 44 67 chr13 41578203 41578678 -78166220 + MLT2C2 LTR ERVL 1 464 0 219 238 0 0 chr13 41579330 41579372 -78165526 + (CA)n Simple_repeat Simple_repeat 1 42 0 307 219 41 27 chr13 41579557 41579630 -78165268 + MIR SINE MIR 76 149 -113 2120 183 119 28 chr13 41581595 41582097 -78162801 - Charlie1a DNA MER1_type -907 548 1 1285 230 138 17 chr13 41582324 41582729 -78162169 - MLT1C LTR MaLR 0 467 14 1287 262 58 38 chr13 41582905 41583355 -78161543 - L1ME1 LINE L1 -5 6161 5703 305 343 38 9 chr13 41583500 41583713 -78161185 + L1ME LINE L1 5544 5762 -359 2366 253 35 16 chr13 41584171 41584847 -78160051 + L1ME3A LINE L1 5473 6161 -9 1375 267 34 59 chr13 41585702 41586298 -78158600 + L1MC5 LINE L1 6676 7255 -733 1202 246 62 26 chr13 41586415 41586915 -78157983 + L1MC5 LINE L1 7260 7777 -184 336 296 83 15 chr13 41587665 41587797 -78157101 + MIR SINE MIR 20 160 -102 1705 185 3 7 chr13 41588144 41588441 -78156457 + AluJo SINE Alu 1 296 -16 1449 206 18 83 chr13 41588516 41588683 -78156215 + MLT1A2 LTR MaLR 1 177 -197 16681 28 1 0 chr13 41588683 41591308 -78153590 + L1PA3 LINE L1 3528 6155 0 1449 206 18 83 chr13 41591308 41591537 -78153361 + MLT1A2 LTR MaLR 177 371 -3 186 337 36 24 chr13 41591626 41591709 -78153189 + MIR SINE MIR 64 147 -61 187 320 13 13 chr13 41591761 41591836 -78153062 + MIR SINE MIR 172 246 -16 254 300 108 31 chr13 41591859 41591989 -78152909 + L2 LINE L2 3169 3308 -5 24 0 0 0 chr13 41592296 41592320 -78152578 + AT_rich Low_complexity Low_complexity 1 24 0 205 322 89 0 chr13 41593354 41593444 -78151454 - L2 LINE L2 -528 2786 2689 348 333 68 10 chr13 41593760 41593967 -78150931 + L1MEd LINE L1 264 482 -5637 545 292 55 41 chr13 41594105 41594595 -78150303 + L1MEd LINE L1 654 1150 -4969 2565 52 0 0 chr13 41594637 41594942 -78149956 + AluY SINE Alu 1 305 -6 863 136 0 45 chr13 41595104 41595236 -78149662 + FLAM_C SINE Alu 1 126 -7 22 0 0 0 chr13 41595236 41595258 -78149640 + AT_rich Low_complexity Low_complexity 1 22 0 196 209 0 90 chr13 41595542 41595609 -78149289 - MIR3 SINE MIR -133 75 15 667 240 31 10 chr13 41596417 41596609 -78148289 + LTR16A LTR ERVL 25 220 -230 1938 170 58 33 chr13 41596663 41597204 -78147694 + MLT2A2 LTR ERVL 1 554 0 554 196 45 0 chr13 41597204 41597333 -78147565 + LTR16A LTR ERVL 306 440 -10 1939 159 3 0 chr13 41597366 41597668 -78147230 - AluJo SINE Alu -8 304 2 552 145 0 12 chr13 41597851 41597934 -78146964 + AluJb SINE Alu 172 253 -59 421 238 157 0 chr13 41597969 41598116 -78146782 + LTR16A LTR ERVL 281 450 0 3743 55 0 7 chr13 41598515 41598966 -78145932 - LTR7 LTR ERV1 -2 448 1 2526 81 45 16 chr13 41598966 41599347 -78145551 - HERVH LTR ERV1 0 7713 7322 1364 119 18 44 chr13 41599345 41599571 -78145327 - HERVH LTR ERV1 -1894 5819 5600 * 2458 173 15 0 chr13 41599572 41599976 -78144922 - HERVH LTR ERV1 -2564 5149 4740 1011 143 0 7 chr13 41599975 41600129 -78144769 - HERVH LTR ERV1 -4069 3644 3492 * 871 124 41 0 chr13 41600119 41600264 -78144634 - HERVH LTR ERV1 -4423 3290 3140 * 15769 88 12 16 chr13 41600243 41602510 -78142388 - HERVH LTR ERV1 -4718 2995 739 19073 90 26 15 chr13 41602690 41605473 -78139425 - HERVH LTR ERV1 -4898 2815 1 3701 53 0 11 chr13 41605475 41605928 -78138970 - LTR7 LTR ERV1 -2 448 1 1102 215 42 106 chr13 41606298 41606885 -78138013 + MER39 LTR ERV1 1 684 0 528 279 13 6 chr13 41607589 41607747 -78137151 - MER114 LTR ERV 0 648 490 315 204 0 0 chr13 41608179 41608233 -78136665 - MER94 DNA DNA -72 62 9 5036 156 34 37 chr13 41608233 41609155 -78135743 - MER49 LTR ERV1 0 923 5 181 235 101 128 chr13 41609305 41609454 -78135444 + MER5B DNA MER1_type 6 150 -28 333 303 92 41 chr13 41609493 41609688 -78135210 - L3 LINE CR1 -195 1382 1178 347 265 37 52 chr13 41609709 41609845 -78135053 + L3 LINE CR1 822 955 -622 487 211 64 9 chr13 41610272 41610381 -78134517 + L2 LINE L2 3173 3287 -26 1161 123 41 10 chr13 41610382 41610577 -78134321 - MER67C LTR ERV1 -3 707 507 734 249 34 15 chr13 41610587 41610792 -78134106 - MER67C LTR ERV1 -379 331 123 2391 53 7 10 chr13 41610794 41611095 -78133803 - AluY SINE Alu -11 300 1 280 192 39 0 chr13 41611344 41611422 -78133476 + GA-rich Low_complexity Low_complexity 4 84 0 4295 142 31 46 chr13 41611675 41612249 -78132649 - LTR8A LTR ERV1 0 727 165 2305 84 7 0 chr13 41612249 41612557 -78132341 - AluY SINE Alu 0 311 2 4295 142 31 46 chr13 41612557 41612720 -78132178 - LTR8A LTR ERV1 -562 165 1 191 322 0 0 chr13 41613922 41613981 -78130917 - MIR SINE MIR -140 122 64 282 56 0 0 chr13 41614333 41614369 -78130529 + (TC)n Simple_repeat Simple_repeat 1 36 0 333 0 0 0 chr13 41614369 41614406 -78130492 + (TG)n Simple_repeat Simple_repeat 2 38 0 1884 161 154 15 chr13 41614406 41614796 -78130102 - LTR47A LTR ERVL -3 449 6 583 197 43 0 chr13 41614947 41615064 -78129834 - L2 LINE L2 0 3313 3192 238 319 34 88 chr13 41615377 41615581 -78129317 + L2 LINE L2 2554 2746 -568 270 0 0 0 chr13 41615672 41615702 -78129196 + (TC)n Simple_repeat Simple_repeat 2 31 0 261 0 0 0 chr13 41615701 41615730 -78129168 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 266 238 24 36 chr13 41615753 41615837 -78129061 + L2 LINE L2 3181 3263 -9 496 271 18 60 chr13 41615938 41616104 -78128794 + MLT1I LTR MaLR 11 169 -240 3877 135 56 32 chr13 41617720 41617858 -78127040 - MER50 LTR ERV1 -23 711 578 2314 91 7 0 chr13 41617858 41618155 -78126743 + AluSp SINE Alu 1 299 -14 3877 135 56 32 chr13 41618155 41618613 -78126285 - MER50 LTR ERV1 -156 578 93 2274 107 0 13 chr13 41618613 41618923 -78125975 + AluSx SINE Alu 1 306 -6 3877 135 56 32 chr13 41618923 41619019 -78125879 - MER50 LTR ERV1 -641 93 1 26 30 0 0 chr13 41622006 41622039 -78122859 + AT_rich Low_complexity Low_complexity 1 33 0 268 300 130 10 chr13 41622492 41622785 -78122113 - L1 LINE L1 -945 5201 4874 308 275 131 31 chr13 41622972 41623045 -78121853 - L1 LINE L1 -1612 4534 4470 2408 77 0 3 chr13 41623045 41623357 -78121541 - AluY SINE Alu 0 311 1 308 275 131 31 chr13 41623357 41624132 -78120766 - L1 LINE L1 -1676 4470 3502 602 214 14 50 chr13 41624159 41624299 -78120599 - L1MC/D LINE L1 -2249 5559 5425 3328 267 113 46 chr13 41624492 41626222 -78118676 - L2 LINE L2 -24 3289 1388 23 0 0 0 chr13 41628469 41628492 -78116406 + AT_rich Low_complexity Low_complexity 1 23 0 234 318 218 0 chr13 41629243 41629413 -78115485 + L2 LINE L2 2481 2687 -627 593 328 92 48 chr13 41629759 41630047 -78114851 + L2 LINE L2 2579 2853 -460 2035 132 21 0 chr13 41630047 41630336 -78114562 + AluSx SINE Alu 6 300 -12 593 328 92 48 chr13 41630336 41630733 -78114165 + L2 LINE L2 2853 3308 -5 2325 113 0 0 chr13 41632134 41632445 -78112453 + AluSx SINE Alu 1 311 -1 2971 3 0 3 chr13 41634985 41635319 -78109579 - L1PA3 LINE L1 -1 6154 5822 492 214 42 88 chr13 41635628 41635843 -78109055 - HAL1 LINE L1 -2299 208 4 291 336 19 37 chr13 41635960 41636067 -78108831 - MIR SINE MIR -62 146 42 1271 82 146 10 chr13 41636587 41636793 -78108105 + L1PA11 LINE L1 5941 6174 0 484 276 33 26 chr13 41637201 41637353 -78107545 - L2 LINE L2 0 3313 3161 288 247 95 21 chr13 41637478 41637668 -78107230 + L1MC4a LINE L1 5292 5495 -2313 428 296 86 57 chr13 41637753 41638135 -78106763 + L1MC4a LINE L1 5659 6023 -98 1208 177 23 19 chr13 41640064 41640330 -78104568 - L1MA6 LINE L1 0 6300 6034 303 301 193 39 chr13 41640482 41640814 -78104084 - L1ME4a LINE L1 -224 5897 5515 5234 132 25 63 chr13 41641088 41641422 -78103476 + L1MA8 LINE L1 4752 5097 -1194 1950 161 6 3 chr13 41641422 41641733 -78103165 + AluSx SINE Alu 1 312 0 5234 132 25 63 chr13 41641733 41642019 -78102879 + L1MA8 LINE L1 5097 5393 -898 2069 111 3 41 chr13 41642019 41642334 -78102564 + AluSq SINE Alu 1 303 -10 5234 132 25 63 chr13 41642334 41643306 -78101592 + L1MA8 LINE L1 5393 6285 -6 2155 115 27 0 chr13 41643475 41643771 -78101127 - AluSq SINE Alu -9 304 1 451 316 108 53 chr13 41644013 41644428 -78100470 - L1ME4a LINE L1 -2009 4137 3700 210 71 0 0 chr13 41644433 41644461 -78100437 + (GA)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr13 41644461 41644482 -78100416 + (TG)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr13 41644861 41644882 -78100016 + (TG)n Simple_repeat Simple_repeat 1 21 0 273 294 99 17 chr13 41645155 41645448 -78099450 - L1ME4a LINE L1 -2709 3437 3121 763 268 105 88 chr13 41646141 41646724 -78098174 + HAL1 LINE L1 844 1436 -1071 467 294 86 47 chr13 41646767 41647101 -78097797 + L1MEc LINE L1 2182 2481 -3734 451 281 26 7 chr13 41647114 41647267 -78097631 - MLT1L LTR MaLR -367 248 93 1983 144 144 8 chr13 41647395 41647769 -78097129 + MSTA LTR MaLR 4 428 0 474 299 27 27 chr13 41647847 41647994 -78096904 + L2 LINE L2 3167 3313 0 225 179 0 0 chr13 41648683 41648722 -78096176 + L2 LINE L2 3274 3312 -1 2237 108 3 3 chr13 41648866 41649161 -78095737 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr13 41649879 41649903 -78094995 + AT_rich Low_complexity Low_complexity 1 24 0 286 304 43 14 chr13 41650527 41650665 -78094233 - MARNA DNA Mariner -14 572 431 183 233 0 23 chr13 41651352 41651395 -78093503 + MIR SINE MIR 219 260 -2 289 202 0 24 chr13 41652544 41652628 -78092270 + GA-rich Low_complexity Low_complexity 4 85 0 235 426 59 34 chr13 41653196 41653433 -78091465 - L2 LINE L2 -87 3185 2943 1571 178 146 26 chr13 41653434 41653851 -78091047 - MLT1C LTR MaLR 0 467 1 376 343 83 44 chr13 41654005 41654416 -78090482 + HAL1 LINE L1 164 590 -1917 1663 270 91 26 chr13 41654548 41655220 -78089678 + HAL1 LINE L1 1088 1818 -689 830 192 66 0 chr13 41655220 41655387 -78089511 + MER5B DNA MER1_type 1 178 0 1663 270 91 26 chr13 41655387 41655480 -78089418 + HAL1 LINE L1 1818 1903 -604 1401 196 161 7 chr13 41655842 41656271 -78088627 + MLT1D LTR MaLR 2 496 -9 254 83 42 62 chr13 41656512 41656560 -78088338 - MER5A DNA MER1_type -84 105 59 1986 154 0 0 chr13 41656883 41657188 -78087710 + AluJb SINE Alu 1 305 -7 26 30 0 0 chr13 41657530 41657563 -78087335 + AT_rich Low_complexity Low_complexity 1 33 0 518 374 74 12 chr13 41657725 41658062 -78086836 + L3 LINE CR1 438 795 -782 316 389 42 27 chr13 41658590 41658922 -78085976 + L2 LINE L2 2418 2754 -560 389 264 50 0 chr13 41659048 41659169 -78085729 + MER20B DNA MER1_type 53 179 -604 426 183 0 0 chr13 41659601 41659716 -78085182 + (TGGA)n Simple_repeat Simple_repeat 4 118 0 354 23 0 0 chr13 41660942 41660985 -78083913 + (CA)n Simple_repeat Simple_repeat 2 44 0 841 269 59 20 chr13 41662655 41662960 -78081938 + MLT1J1 LTR MaLR 1 317 -129 1608 233 32 15 chr13 41663058 41663579 -78081319 + MER90 LTR ERV1 8 614 0 214 263 128 38 chr13 41663882 41664015 -78080883 + MER5A DNA MER1_type 14 158 -31 * 415 290 57 8 chr13 41663896 41664020 -78080878 - MER5A DNA MER1_type -22 167 38 230 278 0 0 chr13 41664265 41664319 -78080579 - L2 LINE L2 0 3272 3219 529 250 64 70 chr13 41664863 41665147 -78079751 + MLT1J2 LTR MaLR 4 290 -156 2819 6 3 3 chr13 41665147 41665460 -78079438 - AluYb8 SINE Alu -5 313 1 529 250 64 70 chr13 41665460 41665582 -78079316 + MLT1J2 LTR MaLR 290 411 -35 314 266 90 11 chr13 41665632 41665809 -78079089 - L1MC4a LINE L1 -1891 5917 5727 1532 170 115 0 chr13 41665918 41666188 -78078710 - AluJo SINE Alu -11 301 1 2639 210 42 25 chr13 41666551 41667266 -78077632 + L1MC4a LINE L1 7082 7808 0 180 0 0 0 chr13 41667268 41667288 -78077610 + (A)n Simple_repeat Simple_repeat 1 20 0 593 340 57 20 chr13 41667295 41667592 -78077306 + L2 LINE L2 336 643 -2671 2194 311 116 48 chr13 41668787 41669395 -78075503 + L2 LINE L2 692 1257 -2057 2251 120 3 3 chr13 41669395 41669704 -78075194 - AluSq SINE Alu -4 309 1 2194 311 116 48 chr13 41669704 41670824 -78074074 + L2 LINE L2 1257 2537 -777 12624 116 32 92 chr13 41670829 41672443 -78072455 - Tigger1 DNA MER2_type -1 2417 1015 2333 93 0 3 chr13 41672443 41672744 -78072154 + AluSx SINE Alu 1 300 -12 12624 116 32 92 chr13 41672744 41673702 -78071196 - Tigger1 DNA MER2_type -1403 1015 1 520 337 96 44 chr13 41673703 41674368 -78070530 + L2 LINE L2 2552 3288 -25 963 119 7 20 chr13 41674396 41674547 -78070351 - FRAM SINE Alu -25 151 3 314 319 122 16 chr13 41674682 41674936 -78069962 - L1MC4a LINE L1 -777 5369 5089 902 207 29 0 chr13 41675278 41675452 -78069446 + AluJb SINE Alu 129 307 -5 356 317 129 54 chr13 41675485 41676113 -78068785 - L1MC4a LINE L1 -3324 2822 2148 2918 16 0 0 chr13 41676481 41676799 -78068099 - AluYb8 SINE Alu 0 318 1 360 324 122 38 chr13 41677191 41677404 -78067494 - MIR SINE MIR -11 251 21 7076 57 5 0 chr13 41677545 41678492 -78066406 + L1PA7 LINE L1 5203 6153 -1 2300 167 29 18 chr13 41678497 41678874 -78066024 + MER90 LTR ERV1 75 459 -155 2549 106 0 11 chr13 41678874 41679241 -78065657 - THE1B LTR MaLR -1 363 1 2300 167 29 18 chr13 41679241 41679311 -78065587 + MER90 LTR ERV1 459 527 -87 1611 131 8 17 chr13 41680579 41680816 -78064082 + MER1B DNA MER1_type 105 339 0 5901 206 65 32 chr13 41680816 41682221 -78062677 + MER109 Unknown Unknown 980 2430 -2 276 79 16 32 chr13 41682234 41682297 -78062601 + (TTTTTG)n Simple_repeat Simple_repeat 2 63 0 2121 151 99 14 chr13 41682538 41682970 -78061928 + MER4D LTR ERV1 1 469 -434 2146 117 3 7 chr13 41682979 41683287 -78061611 + AluSx SINE Alu 3 309 -3 2130 143 0 0 chr13 41684543 41684843 -78060055 + AluSx SINE Alu 1 300 -12 207 360 88 0 chr13 41685383 41685519 -78059379 - L3b LINE CR1 -117 1466 1319 1677 86 3 162 chr13 41685541 41685880 -78059018 + LTR12 LTR ERV1 1 285 -429 328 253 11 0 chr13 41685880 41685971 -78058927 + LTR30 LTR ERV1 552 643 -79 706 120 0 0 chr13 41685973 41686073 -78058825 + LTR12 LTR ERV1 615 714 0 190 320 230 11 chr13 41686820 41686998 -78057900 - MIR SINE MIR -12 250 34 22 0 0 0 chr13 41688040 41688062 -78056836 + AT_rich Low_complexity Low_complexity 1 22 0 2317 113 0 0 chr13 41689188 41689498 -78055400 + AluSq SINE Alu 1 310 -3 347 349 55 0 chr13 41689614 41689723 -78055175 - L2 LINE L2 -22 3250 3136 397 354 29 23 chr13 41690114 41690289 -78054609 + MER91A DNA MER1_type 1 176 -20 248 337 109 0 chr13 41690292 41690384 -78054514 + MER91A DNA MER1_type 95 196 0 235 368 173 32 chr13 41690449 41691133 -78053765 - L2 LINE L2 -406 2908 2129 29 21 0 21 chr13 41691220 41691250 -78053648 + AT_rich Low_complexity Low_complexity 1 31 -15 1792 165 7 0 chr13 41691250 41691541 -78053357 - AluJb SINE Alu -19 293 1 29 21 0 21 chr13 41691541 41691557 -78053341 + AT_rich Low_complexity Low_complexity 31 46 0 731 215 0 0 chr13 41691608 41691738 -78053160 - FLAM_C SINE Alu -2 131 2 498 259 67 0 chr13 41692733 41692868 -78052030 - MIR SINE MIR -14 248 105 2512 176 32 36 chr13 41693604 41694110 -78050788 - MLT1D LTR MaLR -1 504 1 341 321 15 36 chr13 41694264 41694401 -78050497 + MER63 DNA MER1_type 1 760 -76 673 243 151 0 chr13 41695263 41695415 -78049483 - MER5A DNA MER1_type -3 186 12 1868 135 13 48 chr13 41695547 41695859 -78049039 + AluJb SINE Alu 1 301 -11 202 222 22 0 chr13 41696176 41696221 -78048677 + GA-rich Low_complexity Low_complexity 1 46 0 253 216 27 27 chr13 41696587 41696661 -78048237 + (TCTCTG)n Simple_repeat Simple_repeat 5 78 0 209 33 33 0 chr13 41696661 41696691 -78048207 + (TG)n Simple_repeat Simple_repeat 2 32 0 938 7 20 61 chr13 41698734 41698882 -78046016 + (TCTCCC)n Simple_repeat Simple_repeat 1 142 0 6820 53 35 31 chr13 41698882 41700363 -78044535 + SVA Other Other 57 1386 0 405 0 0 0 chr13 41701982 41702027 -78042871 + (CA)n Simple_repeat Simple_repeat 2 46 0 356 225 63 36 chr13 41704369 41704480 -78040418 + L2 LINE L2 3154 3267 -5 721 211 133 0 chr13 41705309 41705475 -78039423 - MER5A DNA MER1_type 0 189 2 33 25 0 0 chr13 41705920 41705960 -78038938 + AT_rich Low_complexity Low_complexity 1 40 0 2345 112 0 3 chr13 41707125 41707437 -78037461 + AluSx SINE Alu 1 311 -1 2594 37 0 7 chr13 41707446 41707745 -78037153 + AluY SINE Alu 1 297 -14 412 351 104 13 chr13 41708679 41708833 -78036065 - MER91A DNA MER1_type -28 168 1 1466 218 85 19 chr13 41709102 41709478 -78035420 - LTR40c LTR ERVL 0 465 65 307 248 110 35 chr13 41710069 41710214 -78034684 - L1ME4a LINE L1 -4 6117 5962 321 254 189 30 chr13 41710216 41710417 -78034481 - L1ME4a LINE L1 -187 5934 5702 671 280 54 88 chr13 41710640 41710994 -78033904 + MLT1J LTR MaLR 25 366 -145 360 342 111 0 chr13 41711034 41711151 -78033747 + MIR SINE MIR 43 172 -90 1799 124 159 90 chr13 41711160 41711211 -78033687 - MER4A LTR ERV1 0 664 618 2469 60 0 10 chr13 41711211 41711511 -78033387 + AluY SINE Alu 1 297 -14 1799 124 159 90 chr13 41711511 41711837 -78033061 - MER4A LTR ERV1 -46 618 261 611 111 10 20 chr13 41711837 41711936 -78032962 - MER4A LTR ERV1 -566 98 1 286 176 0 20 chr13 41711999 41712050 -78032848 + MLT1J LTR MaLR 388 437 -74 236 246 0 14 chr13 41712446 41712515 -78032383 - L1ME3A LINE L1 -3 6167 6100 2432 61 0 22 chr13 41712643 41712955 -78031943 + AluY SINE Alu 5 309 -2 1141 251 105 33 chr13 41712955 41713506 -78031392 - L1MC4 LINE L1 -10 8032 7442 774 214 109 50 chr13 41713864 41714102 -78030796 - MER112 DNA MER1_type -1 259 8 4213 98 7 0 chr13 41714166 41714716 -78030182 + MER41A LTR ERV1 1 554 0 1830 217 50 37 chr13 41714832 41715345 -78029553 + MER39 LTR ERV1 1 700 -7 2466 90 0 0 chr13 41715437 41715747 -78029151 + AluSg SINE Alu 1 310 0 341 318 47 8 chr13 41715809 41715938 -78028960 + MIR SINE MIR 10 143 -119 842 270 35 45 chr13 41717288 41717441 -78027457 - LTR16B LTR ERVL 0 464 311 2228 140 89 29 chr13 41717441 41717855 -78027043 - MER65A LTR ERV1 -4 441 3 842 270 35 45 chr13 41717855 41718005 -78026893 - LTR16B LTR ERVL -153 311 164 385 294 98 7 chr13 41718005 41718148 -78026750 + LTR26 LTR ERV1 1 156 -447 951 196 22 45 chr13 41718159 41718383 -78026515 + LTR26 LTR ERV1 385 603 0 318 255 41 69 chr13 41718383 41718515 -78026383 - LTR16B LTR ERVL -303 161 34 2034 224 82 84 chr13 41718576 41718775 -78026123 + MER21B LTR ERV1 1 199 -664 2439 94 0 7 chr13 41718775 41719084 -78025814 + AluSg SINE Alu 1 307 -3 2034 224 82 84 chr13 41719084 41719624 -78025274 + MER21B LTR ERV1 199 739 -124 244 316 129 58 chr13 41719678 41719773 -78025125 + L2 LINE L2 2991 3078 -194 1448 110 48 40 chr13 41719773 41720001 -78024897 - MER30 DNA MER1_type 0 230 1 244 316 129 58 chr13 41720001 41720076 -78024822 + L2 LINE L2 3078 3173 -99 2216 117 0 0 chr13 41720763 41721061 -78023837 + AluSg SINE Alu 1 298 -12 1203 201 39 42 chr13 41721163 41721473 -78023425 - AluJo SINE Alu 0 309 1 474 286 97 19 chr13 41721598 41721752 -78023146 - MIR SINE MIR -89 173 8 186 43 0 0 chr13 41721873 41721896 -78023002 + (T)n Simple_repeat Simple_repeat 1 23 0 2573 59 0 0 chr13 41721898 41722205 -78022693 - AluY SINE Alu -4 307 1 185 35 69 0 chr13 41723590 41723619 -78021279 + T-rich Low_complexity Low_complexity 1 31 0 2128 91 4 0 chr13 41723623 41723897 -78021001 - AluSx SINE Alu -37 275 1 301 242 80 37 chr13 41725178 41725325 -78019573 - MER5B DNA MER1_type -18 171 4 189 307 70 53 chr13 41725325 41725409 -78019489 - L2 LINE L2 -66 3247 3162 247 206 32 48 chr13 41725854 41725917 -78018981 - MER5A DNA MER1_type 0 189 128 789 151 0 8 chr13 41725921 41726040 -78018858 + AluSq/x SINE Alu 2 119 -194 259 59 0 0 chr13 41726040 41726074 -78018824 + Alu SINE Alu 256 289 -13 662 170 28 0 chr13 41726083 41726189 -78018709 - MER5A DNA MER1_type -80 109 1 202 335 86 46 chr13 41726202 41726354 -78018544 - L2 LINE L2 -559 2755 2598 843 146 0 0 chr13 41726412 41726535 -78018363 + AluJb SINE Alu 1 123 -189 245 311 9 38 chr13 41726662 41726768 -78018130 + MIR3 SINE MIR 62 164 -44 1145 228 5 5 chr13 41726776 41726995 -78017903 + MER20 DNA MER1_type 1 219 0 2498 70 0 0 chr13 41727567 41727868 -78017030 + AluY SINE Alu 1 301 -10 2364 88 0 0 chr13 41729230 41729524 -78015374 - AluSg SINE Alu -16 294 1 1549 138 270 9 chr13 41729548 41729881 -78015017 + LTR29 LTR ERV1 1 420 -202 755 189 37 18 chr13 41729879 41730043 -78014855 + LTR49 LTR ERV1 416 582 -13 * 652 256 134 59 chr13 41730159 41730524 -78014374 - LTR38B LTR ERV1 0 611 184 2256 102 0 25 chr13 41730524 41730838 -78014060 - AluSg SINE Alu -4 306 1 652 256 134 59 chr13 41730838 41730972 -78013926 - LTR38B LTR ERV1 -427 184 61 2079 191 43 41 chr13 41730999 41731461 -78013437 - MLT1C LTR MaLR -1 466 4 4038 171 66 159 chr13 41731477 41731550 -78013348 - L1MC4 LINE L1 -140 7902 7824 1494 156 114 35 chr13 41731550 41731839 -78013059 - AluSx SINE Alu 0 312 1 4038 171 66 159 chr13 41731839 41732730 -78012168 - L1MC4 LINE L1 -218 7824 6948 915 107 7 53 chr13 41732730 41732880 -78012018 - FLAM_C SINE Alu 0 143 1 4038 171 66 159 chr13 41732880 41733190 -78011708 - L1MC4 LINE L1 -1094 6948 6611 2003 215 113 21 chr13 41733212 41733797 -78011101 + MLT1E2 LTR MaLR 1 626 0 469 221 89 0 chr13 41733798 41733946 -78010952 - L1MC4 LINE L1 -1198 6610 6443 2140 97 3 10 chr13 41734292 41734590 -78010308 + AluSx SINE Alu 1 296 -16 1507 168 58 24 chr13 41734662 41734954 -78009944 - AluJo SINE Alu -8 304 3 2175 132 0 0 chr13 41734966 41735269 -78009629 - AluSg SINE Alu -7 303 1 935 241 61 67 chr13 41735486 41735814 -78009084 - MSTD LTR MaLR 0 396 40 181 385 12 0 chr13 41736014 41736097 -78008801 - L2 LINE L2 -5 3267 3184 313 325 51 17 chr13 41736129 41736246 -78008652 - MIR3 SINE MIR -54 154 34 2107 133 0 13 chr13 41736968 41737270 -78007628 - AluSx SINE Alu -14 298 1 387 322 7 34 chr13 41737436 41737585 -78007313 + MIR SINE MIR 20 164 -98 2330 100 3 0 chr13 41737797 41738107 -78006791 - AluSx SINE Alu 0 312 2 596 100 0 0 chr13 41738496 41738576 -78006322 - MADE1 DNA Mariner 0 80 1 2455 158 28 125 chr13 41738704 41739344 -78005554 + MER70B LTR ERVL 1 578 0 696 238 62 33 chr13 41739388 41739598 -78005300 + MIR SINE MIR 47 262 0 1524 244 74 17 chr13 41739627 41740086 -78004812 + L1ME LINE L1 5324 5808 -362 890 316 104 13 chr13 41740203 41740577 -78004321 - MLT1J LTR MaLR -3 508 101 468 259 0 37 chr13 41740595 41740703 -78004195 + MLT1F LTR MaLR 1 104 -438 * 813 206 111 26 chr13 41740701 41740890 -78004008 + MLT1F1 LTR MaLR 363 567 0 1717 181 0 13 chr13 41740932 41741231 -78003667 + AluJb SINE Alu 5 299 -13 2501 244 48 57 chr13 41741486 41741781 -78003117 - L2 LINE L2 -355 2959 2663 1658 185 31 69 chr13 41741781 41742170 -78002728 + MLT1A2 LTR MaLR 1 374 0 2501 244 48 57 chr13 41742170 41742687 -78002211 - L2 LINE L2 -651 2663 2154 928 196 17 0 chr13 41742984 41743157 -78001741 - MER5B DNA MER1_type 0 178 3 2351 85 0 0 chr13 41743307 41743601 -78001297 + AluSq SINE Alu 3 296 -17 2239 128 0 0 chr13 41743883 41744196 -78000702 - AluSq SINE Alu 0 313 1 234 307 0 0 chr13 41744992 41745067 -77999831 + MIR SINE MIR 65 139 -123 2478 223 45 75 chr13 41745608 41746318 -77998580 + MER21B LTR ERV1 123 811 -52 22 0 0 0 chr13 41746444 41746466 -77998432 + AT_rich Low_complexity Low_complexity 1 22 0 1990 122 0 67 chr13 41747098 41747425 -77997473 + AluSx SINE Alu 1 305 -7 228 231 103 13 chr13 41747818 41747896 -77997002 + L2 LINE L2 1876 1960 -1354 484 51 0 0 chr13 41747921 41747980 -77996918 - Alu SINE Alu -10 300 242 1094 101 0 0 chr13 41747980 41748118 -77996780 - AluSg SINE Alu -172 138 1 335 122 110 12 chr13 41748432 41748514 -77996384 - MLT1L LTR MaLR -4 611 522 322 256 86 52 chr13 41748525 41748582 -77996316 + L1MC5 LINE L1 7479 7533 -428 1914 212 20 20 chr13 41748582 41748978 -77995920 - MSTD LTR MaLR 0 396 1 322 256 86 52 chr13 41748978 41749189 -77995709 + L1MC5 LINE L1 7533 7756 -205 305 232 0 12 chr13 41749378 41749480 -77995418 + L1MC5 LINE L1 7832 8011 -31 323 251 78 42 chr13 41749501 41749668 -77995230 - MLT1L LTR MaLR -60 555 383 560 195 55 8 chr13 41749669 41749797 -77995101 - MER94 DNA DNA 0 134 1 407 369 68 28 chr13 41750103 41750428 -77994470 + L2 LINE L2 2549 2886 -428 2022 123 0 36 chr13 41750712 41750877 -77994021 - AluSq SINE Alu -20 293 142 2491 77 0 3 chr13 41750877 41751187 -77993711 - AluSg1 SINE Alu 0 309 1 2022 123 0 36 chr13 41751187 41751323 -77993575 - AluSq SINE Alu -171 142 3 394 173 15 90 chr13 41751364 41751497 -77993401 - MER106A DNA MER1_type -3 233 111 659 174 60 9 chr13 41751947 41752103 -77992795 - MIR SINE MIR 0 262 98 412 323 8 23 chr13 41752801 41752934 -77991964 + L2 LINE L2 3183 3313 0 606 180 18 9 chr13 41753337 41753448 -77991450 - MER101 LTR ERV1 0 474 363 553 128 12 0 chr13 41753437 41753523 -77991375 - MER101 LTR ERV1 -387 87 1 * 183 248 108 101 chr13 41753560 41753661 -77991237 - MIR SINE MIR -63 145 41 4680 97 16 75 chr13 41753661 41753835 -77991063 - LTR8 LTR ERV1 0 691 508 2356 79 10 3 chr13 41753835 41754140 -77990758 - AluSc SINE Alu -2 307 1 4680 97 16 75 chr13 41754140 41754697 -77990201 - LTR8 LTR ERV1 -183 508 3 183 248 108 101 chr13 41754697 41754724 -77990174 - MIR SINE MIR -167 41 16 1886 72 124 11 chr13 41755031 41755296 -77989602 + AluSg SINE Alu 1 295 -15 1214 97 103 0 chr13 41755470 41755645 -77989253 - AluSg SINE Alu -117 193 1 232 362 43 83 chr13 41756478 41756829 -77988069 - L2 LINE L2 -26 3246 2910 586 174 39 84 chr13 41756897 41756941 -77987957 - Charlie5 DNA MER1_type -5 2580 2536 2652 23 0 3 chr13 41756941 41757241 -77987657 - AluY SINE Alu -11 300 2 586 174 39 84 chr13 41757241 41757374 -77987524 - Charlie5 DNA MER1_type -49 2536 2411 1699 146 7 43 chr13 41757380 41757682 -77987216 + AluJo SINE Alu 9 299 -13 265 282 26 13 chr13 41757682 41757760 -77987138 - MIR SINE MIR -131 131 53 1919 252 54 44 chr13 41758109 41758230 -77986668 - MER20B DNA MER1_type -70 713 595 2054 129 3 0 chr13 41758230 41758524 -77986374 + AluSx SINE Alu 1 295 -17 1919 252 54 44 chr13 41758524 41759101 -77985797 - MER20B DNA MER1_type -188 595 8 243 131 16 66 chr13 41759322 41759383 -77985515 + FAM SINE Alu 121 178 -1 22 0 0 0 chr13 41759476 41759498 -77985400 + AT_rich Low_complexity Low_complexity 1 22 0 1415 80 0 0 chr13 41759722 41759898 -77985000 - L1PA11 LINE L1 0 6174 5999 2062 129 0 0 chr13 41760152 41760447 -77984451 - AluSx SINE Alu -17 295 1 394 250 58 33 chr13 41760489 41760609 -77984289 + L2 LINE L2 3191 3313 0 187 260 164 0 chr13 41761233 41761306 -77983592 + L2 LINE L2 2977 3061 -211 371 228 69 40 chr13 41761625 41761726 -77983172 + L2 LINE L2 3156 3259 -13 221 221 29 59 chr13 41762330 41762398 -77982500 + L2 LINE L2 3207 3272 0 372 266 0 0 chr13 41762810 41762889 -77982009 - MER58B DNA MER1_type 0 341 263 234 54 0 81 chr13 41762889 41762926 -77981972 + L1PA12 LINE L1 6099 6132 -36 186 316 34 60 chr13 41763075 41763192 -77981706 - L2 LINE L2 0 3313 3200 230 348 36 45 chr13 41763218 41763330 -77981568 + L2 LINE L2 3153 3263 -9 395 187 167 136 chr13 41763520 41763718 -77981180 - MER102a DNA MER1_type 0 330 127 513 274 65 60 chr13 41764081 41764296 -77980602 - MIR SINE MIR -32 230 15 1072 287 130 11 chr13 41764341 41764801 -77980097 - LTR33A LTR ERVL -7 516 2 1950 161 0 3 chr13 41815032 41815331 -77929567 + AluSx SINE Alu 2 299 -13 2166 175 21 0 chr13 41815342 41815714 -77929184 - MSTA LTR MaLR -48 380 1 992 215 10 10 chr13 41815715 41815920 -77928978 + AluJo SINE Alu 93 297 -15 2134 154 23 37 chr13 41815920 41816236 -77928662 - L1MC3 LINE L1 -150 7635 7325 2220 134 3 0 chr13 41816236 41816542 -77928356 + AluSq SINE Alu 1 307 -6 2134 154 23 37 chr13 41816542 41816659 -77928239 - L1MC3 LINE L1 -460 7325 7208 262 296 11 11 chr13 41816665 41816753 -77928145 - MLT1F1 LTR MaLR -443 124 37 265 83 0 0 chr13 41816760 41816796 -77928102 - L1MC3 LINE L1 -693 7092 7057 1234 112 0 0 chr13 41816797 41816966 -77927932 - AluY SINE Alu -5 306 138 2038 125 0 7 chr13 41817069 41817356 -77927542 - AluSx SINE Alu -27 285 1 1299 187 69 0 chr13 41817446 41817692 -77927206 - AluJo SINE Alu -15 297 35 21 36 0 0 chr13 41817888 41817916 -77926982 + AT_rich Low_complexity Low_complexity 1 28 0 2171 116 0 22 chr13 41818096 41818414 -77926484 - AluSq SINE Alu -2 311 1 4300 105 29 5 chr13 41818420 41818771 -77926127 - L1PB1 LINE L1 -1 6150 5776 252 0 0 0 chr13 41818771 41818799 -77926099 + (TG)n Simple_repeat Simple_repeat 2 29 0 4300 105 29 5 chr13 41818799 41819065 -77925833 - L1PB1 LINE L1 -375 5776 5518 835 104 0 0 chr13 41819165 41819271 -77925627 - AluSc SINE Alu -203 106 1 8862 186 23 29 chr13 41819271 41819433 -77925465 - L1PB1 LINE L1 -660 5491 5330 2184 96 10 7 chr13 41819433 41819725 -77925173 - AluSq SINE Alu -20 293 1 8862 186 23 29 chr13 41819725 41821759 -77923139 - L1PB1 LINE L1 -821 5330 3305 2448 74 39 97 chr13 41821759 41822194 -77922704 + LTR19C LTR ERV1 1 410 -369 1781 156 0 37 chr13 41822912 41823233 -77921665 - AluJo SINE Alu -3 309 1 1034 160 18 0 chr13 41823365 41823534 -77921364 - AluJb SINE Alu -3 309 138 2408 204 98 76 chr13 41823534 41824375 -77920523 - MER52A LTR ERV1 -782 973 4 493 323 72 40 chr13 41824876 41825127 -77919771 - MIR SINE MIR -2 260 2 705 285 94 18 chr13 41825138 41825478 -77919420 - L1ME4a LINE L1 -224 5897 5532 2459 87 0 0 chr13 41825717 41826026 -77918872 + AluY SINE Alu 1 309 -2 377 280 87 7 chr13 41826337 41826487 -77918411 + MIR3 SINE MIR 36 197 -11 2020 152 0 10 chr13 41826940 41827249 -77917649 + AluSx SINE Alu 1 306 -6 7284 81 18 14 chr13 41827750 41828716 -77916182 - LTR5 LTR ERVK 0 969 1 224 385 51 0 chr13 41829032 41829110 -77915788 - L2 LINE L2 -49 3223 3142 1189 115 25 140 chr13 41829260 41829546 -77915352 - Tigger7 DNA MER2_type -1 2490 2238 1153 173 116 46 chr13 41829853 41830137 -77914761 - MLT2C1 LTR ERVL -92 305 2 1997 121 27 7 chr13 41830318 41830615 -77914283 - AluSx SINE Alu -9 303 1 248 254 167 71 chr13 41831637 41831763 -77913135 + L2 LINE L2 2345 2482 -832 1465 308 61 20 chr13 41831954 41832516 -77912382 + L2 LINE L2 2486 3096 -217 3062 194 28 59 chr13 41832516 41833022 -77911876 - LTR2B LTR ERV1 0 490 1 1465 308 61 20 chr13 41833022 41833250 -77911648 + L2 LINE L2 3096 3313 0 4935 113 47 8 chr13 41833635 41834386 -77910512 + LTR17 LTR ERV1 1 780 0 198 328 95 35 chr13 41834440 41834556 -77910342 - L2 LINE L2 -45 3268 3146 212 269 171 10 chr13 41834792 41834940 -77909958 - MIR SINE MIR -62 146 20 2214 101 0 41 chr13 41835434 41835752 -77909146 + AluSp SINE Alu 1 305 -8 21 36 0 0 chr13 41836193 41836221 -77908677 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 41836831 41836853 -77908045 + AT_rich Low_complexity Low_complexity 1 22 0 2162 124 41 86 chr13 41837278 41837697 -77907201 + LTR19C LTR ERV1 380 779 0 3894 206 34 20 chr13 41837698 41838269 -77906629 - L1 LINE L1 -2839 3307 2714 1983 120 52 7 chr13 41838269 41838560 -77906338 - AluSq SINE Alu -9 304 1 3894 206 34 20 chr13 41838560 41839010 -77905888 - L1 LINE L1 -3432 2714 2272 12924 103 137 23 chr13 41839022 41841276 -77903622 - L1PBa LINE L1 -4349 2514 3 21 0 0 0 chr13 41841349 41841370 -77903528 + AT_rich Low_complexity Low_complexity 1 21 0 1299 92 54 0 chr13 41841490 41841674 -77903224 - AluSp SINE Alu -6 307 114 1272 205 86 37 chr13 41841795 41842224 -77902674 - LTR7 LTR ERV1 0 450 1 3323 132 24 4 chr13 41842224 41842770 -77902128 - HERVH LTR ERV1 0 7713 7157 309 200 0 0 chr13 41842763 41842818 -77902080 - HERVH LTR ERV1 -1697 6016 5962 * 4652 102 27 3 chr13 41842838 41843512 -77901386 - HERVH LTR ERV1 -2803 4910 4221 1422 134 0 5 chr13 41843510 41843726 -77901172 - HERVH LTR ERV1 -3423 4290 4076 * 1162 181 60 32 chr13 41843726 41843974 -77900924 - MSTB LTR MaLR -168 258 4 1099 283 114 23 chr13 41844195 41844623 -77900275 - LTR33 LTR ERVL -52 469 3 2360 107 0 0 chr13 41844833 41845142 -77899756 - AluSq SINE Alu -4 309 1 2183 103 7 3 chr13 41845142 41845433 -77899465 - AluSx SINE Alu -20 292 1 331 278 9 28 chr13 41845459 41845567 -77899331 - MIR SINE MIR -11 251 146 356 246 82 33 chr13 41845651 41845868 -77899030 - L1M3 LINE L1 -734 5437 5210 1185 247 147 28 chr13 41846691 41847148 -77897750 - MLT1J LTR MaLR 0 511 1 1702 184 78 9 chr13 41848398 41848746 -77896152 - MLT1D LTR MaLR -133 372 1 2081 83 28 7 chr13 41848753 41849042 -77895856 - AluY SINE Alu -16 295 1 395 252 107 0 chr13 41851415 41851518 -77893380 - L2 LINE L2 -1 3271 3158 236 216 0 20 chr13 41851898 41851949 -77892949 + L2 LINE L2 3222 3271 -1 763 306 192 21 chr13 41852458 41853102 -77891796 - L2 LINE L2 -8 3305 2557 461 232 134 75 chr13 41854305 41854695 -77890203 - L1MEd LINE L1 -1037 1453 947 1675 156 4 4 chr13 41854737 41854987 -77889911 - AluSq SINE Alu -63 250 1 249 305 76 44 chr13 41854999 41855248 -77889650 - HAL1 LINE L1 -1429 1078 822 23 68 0 0 chr13 41855979 41856023 -77888875 + AT_rich Low_complexity Low_complexity 1 44 0 902 216 31 108 chr13 41856927 41857186 -77887712 - MER8 DNA MER2_type 0 239 1 1897 123 18 3 chr13 41857800 41858084 -77886814 - AluSx SINE Alu -24 288 1 241 188 62 0 chr13 41858388 41858436 -77886462 + L2 LINE L2 3222 3272 0 1116 251 244 17 chr13 41858813 41859399 -77885499 + L2 LINE L2 1743 2461 -853 723 268 117 0 chr13 41859404 41859609 -77885289 - LTR16A LTR ERVL -5 445 217 308 266 89 0 chr13 41859610 41859689 -77885209 - L2 LINE L2 -1112 2202 2117 455 309 73 0 chr13 41859689 41859867 -77885031 - LTR16A LTR ERVL -242 208 18 1168 267 135 3 chr13 41859876 41860262 -77884636 + L2 LINE L2 2450 2886 -428 188 326 10 82 chr13 41860398 41860496 -77884402 - MIR SINE MIR -102 106 16 216 0 0 0 chr13 41860987 41861011 -77883887 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr13 41861508 41861541 -77883357 + AT_rich Low_complexity Low_complexity 1 33 0 475 265 146 64 chr13 41862010 41862197 -77882701 + MIR SINE MIR 13 222 -40 2677 141 53 0 chr13 41862197 41862651 -77882247 - L1PA13 LINE L1 0 6163 5686 475 265 146 64 chr13 41862651 41862682 -77882216 + MIR SINE MIR 222 249 -13 258 369 85 0 chr13 41862774 41862915 -77881983 + MIR SINE MIR 104 256 -6 970 171 62 0 chr13 41863355 41863531 -77881367 - MER6B DNA MER2_type -1 209 23 2165 80 14 3 chr13 41863568 41863855 -77881043 - AluY SINE Alu -20 291 2 2508 96 11 14 chr13 41863909 41864274 -77880624 - THE1B LTR MaLR 0 364 1 312 241 0 0 chr13 41864964 41865043 -77879855 + (TA)n Simple_repeat Simple_repeat 1 79 0 2495 66 0 0 chr13 41865283 41865586 -77879312 - AluY SINE Alu -8 303 1 372 330 79 23 chr13 41866416 41866631 -77878267 - MIR SINE MIR -30 232 6 356 252 122 46 chr13 41866646 41866777 -77878121 - MIR SINE MIR -65 197 57 637 236 146 6 chr13 41867022 41867200 -77877698 - MIR SINE MIR -17 245 43 2168 95 4 0 chr13 41867202 41867475 -77877423 + AluSg SINE Alu 2 275 -35 231 245 0 0 chr13 41869403 41869456 -77875442 - Charlie4 DNA MER1_type -1908 53 1 233 242 66 55 chr13 41870230 41870321 -77874577 + MER5C DNA MER1_type 14 105 -219 236 278 44 22 chr13 41870360 41870450 -77874448 + MER5C DNA MER1_type 233 324 0 * 527 305 30 30 chr13 41870450 41870639 -77874259 - L3 LINE CR1 -47 1530 1342 308 294 76 34 chr13 41870867 41870986 -77873912 + L3 LINE CR1 269 392 -1185 852 319 146 22 chr13 41871342 41871908 -77872990 - L2 LINE L2 -1 3312 2688 564 200 0 0 chr13 41871995 41872095 -77872803 + Charlie1a DNA MER1_type 102 201 -1254 245 169 220 68 chr13 41872139 41872174 -77872724 + L1M4 LINE L1 4972 5000 -1146 782 264 49 59 chr13 41872174 41872580 -77872318 - MER93a LTR ERV1 0 402 1 245 169 220 68 chr13 41872580 41872662 -77872236 + L1M4 LINE L1 5000 5107 -1039 686 268 48 67 chr13 41872675 41872818 -77872080 - L1M4 LINE L1 -2414 3732 3588 1995 97 22 4 chr13 41872818 41873087 -77871811 - AluY SINE Alu -3 308 35 686 268 48 67 chr13 41873087 41873193 -77871705 - L1M4 LINE L1 -2558 3588 3482 2313 96 0 10 chr13 41873193 41873507 -77871391 - AluSx SINE Alu -1 311 1 686 268 48 67 chr13 41873507 41873734 -77871164 - L1M4 LINE L1 -2664 3482 3264 1306 277 106 10 chr13 41873757 41874595 -77870303 - L1M4 LINE L1 -2998 3148 2131 192 234 0 0 chr13 41874599 41874646 -77870252 + (TA)n Simple_repeat Simple_repeat 1 47 0 1530 187 0 8 chr13 41874784 41875046 -77869852 + AluJo SINE Alu 36 295 -17 2575 169 26 61 chr13 41875455 41875518 -77869380 - Charlie1 DNA MER1_type -76 2685 2621 1695 194 3 16 chr13 41875518 41875828 -77869070 - AluJb SINE Alu 0 312 7 2575 169 26 61 chr13 41875828 41876416 -77868482 - Charlie1 DNA MER1_type -140 2621 2057 950 200 17 0 chr13 41876416 41876596 -77868302 + MER5A DNA MER1_type 7 189 0 1225 319 133 33 chr13 41877279 41878126 -77866772 - L2 LINE L2 -685 2629 1698 715 262 50 130 chr13 41878232 41878655 -77866243 + L3 LINE CR1 796 1184 -393 386 275 125 0 chr13 41878655 41878775 -77866123 - L2 LINE L2 -2 3311 3177 1057 230 39 30 chr13 41878788 41879199 -77865699 + MLT1H LTR MaLR 3 539 -10 1098 289 113 42 chr13 41879218 41879775 -77865123 - L2 LINE L2 -164 3149 2530 2360 78 3 0 chr13 41879775 41880068 -77864830 + AluSp SINE Alu 1 294 -19 1098 289 113 42 chr13 41880068 41880205 -77864693 - L2 LINE L2 -783 2530 2404 309 290 77 13 chr13 41880201 41880356 -77864542 + L3 LINE CR1 1220 1384 -193 * 202 224 24 106 chr13 41880376 41880461 -77864437 - L2 LINE L2 -6 3307 3230 407 250 80 0 chr13 41880506 41880606 -77864292 + L3 LINE CR1 1467 1574 -3 585 174 42 7 chr13 41880671 41880815 -77864083 - L1MB8 LINE L1 -3 6175 6027 4341 205 81 60 chr13 41880841 41882278 -77862620 - L1M4 LINE L1 -1325 4821 3355 23 0 0 0 chr13 41883879 41883902 -77860996 + AT_rich Low_complexity Low_complexity 1 23 0 1269 169 24 109 chr13 41884592 41884843 -77860055 + MLT1D LTR MaLR 1 219 -286 198 0 0 0 chr13 41884843 41884865 -77860033 + (GA)n Simple_repeat Simple_repeat 1 22 0 1269 169 24 109 chr13 41884865 41884944 -77859954 + MLT1D LTR MaLR 219 303 -202 368 311 37 62 chr13 41885812 41885973 -77858925 + MIR3 SINE MIR 31 187 -21 211 275 62 88 chr13 41886105 41886127 -77858771 + L2 LINE L2 3157 3178 -94 3218 175 60 15 chr13 41886127 41886722 -77858176 - LTR26E LTR ERV1 0 622 1 211 275 62 88 chr13 41886722 41886779 -77858119 + L2 LINE L2 3178 3234 -38 1713 128 13 58 chr13 41886915 41887228 -77857670 + MER4D LTR ERV1 1 299 -573 3178 163 125 29 chr13 41887423 41888086 -77856812 - LTR8A LTR ERV1 0 727 1 232 342 105 13 chr13 41888093 41888169 -77856729 - MIR SINE MIR -156 106 24 542 287 130 14 chr13 41888243 41888466 -77856432 - MIR SINE MIR -12 250 2 2131 112 84 35 chr13 41888789 41889136 -77855762 + THE1B LTR MaLR 1 364 0 180 321 107 0 chr13 41889881 41889965 -77854933 + L2 LINE L2 3201 3293 -20 252 231 167 0 chr13 41890599 41890677 -77854221 + L2 LINE L2 2640 2730 -584 861 301 36 42 chr13 41890815 41891201 -77853697 - HAL1 LINE L1 -1594 913 530 670 257 25 40 chr13 41891215 41891417 -77853481 - MER63A DNA MER1_type -11 199 1 1269 261 80 23 chr13 41891432 41891868 -77853030 - HAL1 LINE L1 -2001 506 46 663 188 0 55 chr13 41892061 41892189 -77852709 + FLAM_A SINE Alu 1 121 -12 336 260 68 62 chr13 41893135 41893281 -77851617 + MIR SINE MIR 34 180 -82 26 50 0 0 chr13 41893426 41893466 -77851432 + AT_rich Low_complexity Low_complexity 1 40 0 190 235 26 130 chr13 41893903 41894018 -77850880 + L2 LINE L2 2954 3056 -257 525 280 53 0 chr13 41894191 41894341 -77850557 + MIR SINE MIR 2 159 -103 387 250 29 10 chr13 41895098 41895202 -77849696 - MER103 DNA DNA -45 121 16 364 321 144 52 chr13 41895838 41896440 -77848458 + L2 LINE L2 2212 2869 -445 358 369 27 34 chr13 41896804 41896953 -77847945 + L2 LINE L2 3125 3272 0 395 240 0 20 chr13 41898098 41898198 -77846700 - MER63 DNA MER1_type -271 790 693 2230 107 10 0 chr13 41898199 41898621 -77846277 + AluSp SINE Alu 1 425 0 321 150 0 190 chr13 41898624 41898724 -77846174 - MER63 DNA MER1_type -129 707 1 1111 279 74 20 chr13 41900758 41901149 -77843749 + HERV16 LTR ERVL 742 1153 -3843 2607 257 109 45 chr13 41901530 41901714 -77843184 + HAL1 LINE L1 798 969 -1538 1988 152 0 10 chr13 41901714 41902024 -77842874 + AluSx SINE Alu 1 307 -5 2607 257 109 45 chr13 41902024 41903269 -77841629 + HAL1 LINE L1 969 2319 -188 931 135 7 7 chr13 41903272 41903413 -77841485 + AluJb SINE Alu 1 141 -171 3097 101 26 0 chr13 41903542 41903966 -77840932 + MLT2A2 LTR ERVL 19 453 0 227 200 0 13 chr13 41904007 41904082 -77840816 + (CTA)n Simple_repeat Simple_repeat 1 74 0 185 147 0 0 chr13 41904474 41904508 -77840390 + L2 LINE L2 3239 3272 0 2139 156 35 24 chr13 41904762 41905133 -77839765 + THE1C LTR MaLR 1 375 0 466 284 7 20 chr13 41905383 41905531 -77839367 - L2 LINE L2 -1 3312 3167 231 103 0 0 chr13 41905807 41905836 -77839062 + (A)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr13 41905841 41905866 -77839032 + (TA)n Simple_repeat Simple_repeat 2 26 0 977 179 0 28 chr13 41905966 41906145 -77838753 - AluJb SINE Alu -138 174 1 1809 246 55 7 chr13 41906146 41906823 -77838075 - L1M4 LINE L1 -3108 3038 2202 844 158 0 8 chr13 41906834 41906961 -77837937 - FLAM_C SINE Alu -17 126 1 270 256 0 0 chr13 41906966 41907048 -77837850 - L1M4 LINE L1 -3932 2214 2133 5639 124 12 21 chr13 41907055 41908053 -77836845 - L1PB1 LINE L1 -3 6148 5160 667 133 250 0 chr13 41908121 41908249 -77836649 + AluSq SINE Alu 134 293 -20 830 244 235 6 chr13 41908269 41908597 -77836301 - L1ME LINE L1 -2272 3808 3406 443 185 167 43 chr13 41908745 41908907 -77835991 - L1ME LINE L1 -3225 2855 2674 473 259 210 13 chr13 41908914 41909138 -77835760 - MER5C DNA MER1_type -56 268 1 1170 284 62 6 chr13 41909147 41909618 -77835280 - L1ME LINE L1 -3372 2708 2212 1033 206 45 45 chr13 41909672 41909958 -77834940 - L1ME1 LINE L1 -5 6161 5876 263 272 58 53 chr13 41909960 41910166 -77834732 - L1ME LINE L1 -5862 208 2 2107 148 3 0 chr13 41910306 41910616 -77834282 - AluJb SINE Alu -1 311 1 288 0 0 0 chr13 41913152 41913184 -77831714 + (CA)n Simple_repeat Simple_repeat 2 33 0 272 206 15 29 chr13 41913469 41913537 -77831361 + L3b LINE CR1 1135 1201 -382 262 288 71 35 chr13 41913577 41913747 -77831151 - L2 LINE L2 0 3313 3138 1031 204 43 14 chr13 41914214 41914425 -77830473 - MER20 DNA MER1_type -1 218 2 239 225 371 0 chr13 41914710 41914799 -77830099 + L2 LINE L2 3151 3272 0 292 247 146 73 chr13 41915203 41915320 -77829578 + MIR SINE MIR 24 160 -102 1448 62 6 0 chr13 41915320 41915496 -77829402 + L1PA5 LINE L1 5974 6150 -4 292 247 146 73 chr13 41915496 41915556 -77829342 + MIR SINE MIR 160 214 -48 479 258 103 37 chr13 41915664 41916030 -77828868 - MLT1G1 LTR MaLR -59 536 67 229 352 0 0 chr13 41916333 41916387 -77828511 + L2 LINE L2 3151 3204 -68 617 256 128 10 chr13 41918242 41918437 -77826461 - MIR SINE MIR -43 219 2 1092 87 0 0 chr13 41921108 41921246 -77823652 - AluSp/q SINE Alu -17 296 159 211 257 68 40 chr13 41923090 41923164 -77821734 + MIR SINE MIR 45 120 -88 463 314 73 14 chr13 41923204 41923424 -77821474 + MIR SINE MIR 20 252 -10 633 170 63 6 chr13 41923882 41924041 -77820857 - Charlie4 DNA MER1_type -54 1907 1740 395 281 260 5 chr13 41924600 41924796 -77820102 + MIR SINE MIR 6 251 -11 492 232 179 0 chr13 41924824 41924975 -77819923 + MER5B DNA MER1_type 1 178 0 684 228 93 0 chr13 41925450 41925612 -77819286 + MER5A DNA MER1_type 13 189 0 502 253 58 32 chr13 41925616 41925770 -77819128 + MIR SINE MIR 9 166 -96 1717 187 82 12 chr13 41925784 41925954 -77818944 + Charlie4a DNA MER1_type 17 174 -1787 2600 59 0 0 chr13 41925954 41926259 -77818639 - AluY SINE Alu -2 309 5 1717 187 82 12 chr13 41926259 41926500 -77818398 + Charlie4a DNA MER1_type 174 457 -51 346 194 30 0 chr13 41927006 41927073 -77817825 - L2 LINE L2 -7 3306 3238 1917 211 27 17 chr13 41927189 41927596 -77817302 + MLT2D LTR ERVL 4 414 0 487 270 74 47 chr13 41927834 41928049 -77816849 - MIR SINE MIR -11 251 31 302 315 19 19 chr13 41928482 41928590 -77816308 - L3 LINE CR1 -1150 427 320 313 321 0 70 chr13 41929786 41929973 -77814925 + LTR67 LTR ERVL 13 186 -371 395 264 93 21 chr13 41930071 41930264 -77814634 + LTR67 LTR ERVL 351 557 0 262 240 0 0 chr13 41930485 41930535 -77814363 + MER3 DNA MER1_type 41 90 -119 * 322 118 0 105 chr13 41930497 41930562 -77814336 - MER3 DNA MER1_type -5 204 146 5592 67 20 39 chr13 41930562 41930796 -77814102 + L1MA1 LINE L1 5554 5791 -511 2174 110 0 0 chr13 41930796 41931104 -77813794 + AluSx SINE Alu 1 308 0 5592 67 20 39 chr13 41931104 41931631 -77813267 + L1MA1 LINE L1 5791 6302 0 616 271 6 0 chr13 41931652 41931818 -77813080 - MER3 DNA MER1_type -42 167 1 244 242 316 0 chr13 41932257 41932352 -77812546 + L2 LINE L2 3137 3261 -11 343 236 118 18 chr13 41932653 41932763 -77812135 + MIR SINE MIR 126 246 -16 21 0 0 0 chr13 41933044 41933065 -77811833 + AT_rich Low_complexity Low_complexity 1 21 0 206 132 0 26 chr13 41933230 41933268 -77811630 + (TCTCCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr13 41933484 41933511 -77811387 + (TC)n Simple_repeat Simple_repeat 2 28 0 312 278 24 18 chr13 41933513 41933682 -77811216 + (TCTCTG)n Simple_repeat Simple_repeat 2 171 0 226 308 19 39 chr13 41934146 41934250 -77810648 - MIR SINE MIR -97 165 64 234 62 0 0 chr13 41935972 41936004 -77808894 + (CA)n Simple_repeat Simple_repeat 1 32 0 4111 138 5 20 chr13 41936966 41937611 -77807287 - MER41B LTR ERV1 0 635 1 255 203 34 0 chr13 41938686 41938745 -77806153 + tRNA-Ile-ATT tRNA tRNA 14 74 -3 896 241 71 83 chr13 41939223 41939674 -77805224 - L2 LINE L2 -2 3311 2851 4800 130 30 13 chr13 41939674 41940444 -77804454 - LTR39 LTR ERV1 0 783 1 896 241 71 83 chr13 41940444 41940543 -77804355 - L2 LINE L2 -462 2851 2752 397 153 0 47 chr13 41941411 41941496 -77803402 - MER53 DNA DNA -6 183 103 2461 86 0 0 chr13 41941497 41941798 -77803100 + AluSq SINE Alu 1 301 -12 2290 104 0 7 chr13 41941808 41942117 -77802781 + AluSq SINE Alu 1 307 -6 227 151 19 19 chr13 41942132 41942185 -77802713 - MER53 DNA DNA -3 186 134 1956 92 0 0 chr13 41942307 41942545 -77802353 - AluSx SINE Alu -74 238 1 651 189 23 0 chr13 41942545 41942677 -77802221 - MER53 DNA DNA -49 140 6 363 359 21 11 chr13 41943363 41943597 -77801301 - MIR SINE MIR -14 248 14 2262 103 7 0 chr13 41945345 41945645 -77799253 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr13 41946328 41946357 -77798541 + AT_rich Low_complexity Low_complexity 1 29 0 330 243 201 14 chr13 41946557 41946701 -77798197 - MER5A DNA MER1_type -2 187 17 1568 190 96 25 chr13 41948343 41948779 -77796119 + MLT1C LTR MaLR 1 467 0 193 274 65 0 chr13 41948875 41948937 -77795961 + L2 LINE L2 3207 3272 0 548 276 131 0 chr13 41952356 41952555 -77792343 - MIR SINE MIR -1 261 37 227 323 196 5 chr13 41952809 41953029 -77791869 + L2 LINE L2 2576 2837 -477 1764 174 0 17 chr13 41953149 41953448 -77791450 + AluJo SINE Alu 1 294 -18 836 221 43 14 chr13 41953448 41953645 -77791253 - MLT1D LTR MaLR -299 206 1 207 271 0 0 chr13 41953683 41953731 -77791167 + L2 LINE L2 3240 3287 -26 185 259 17 17 chr13 41954298 41954356 -77790542 + MIR SINE MIR 152 209 -53 1324 199 112 13 chr13 41954946 41955258 -77789640 + MER2 DNA MER2_type 1 343 -1 407 300 0 0 chr13 41955304 41955404 -77789494 - L3 LINE CR1 -7 1570 1471 259 300 11 0 chr13 41955897 41955987 -77788911 - L1ME LINE L1 -274 5847 5757 459 313 21 26 chr13 41957288 41957480 -77787418 + MLT1K LTR MaLR 124 314 -274 1735 215 39 35 chr13 41958687 41959147 -77785751 - MLT1C LTR MaLR 0 467 6 304 315 18 9 chr13 41959348 41959459 -77785439 + MER81 DNA DNA 3 114 0 211 360 9 0 chr13 41960542 41960653 -77784245 + L2 LINE L2 2943 3054 -218 437 277 54 36 chr13 41961605 41961771 -77783127 + MIR3 SINE MIR 3 171 -37 307 295 36 0 chr13 41962302 41962414 -77782484 - MLT1L LTR MaLR -4 611 496 358 276 52 88 chr13 41962443 41962635 -77782263 - MLT1L LTR MaLR -204 411 227 793 356 21 23 chr13 41963441 41963868 -77781030 - LTR16B LTR ERVL 0 464 39 617 247 165 40 chr13 41964572 41964888 -77780010 - MLT1L LTR MaLR -10 554 240 22 0 0 0 chr13 41965578 41965600 -77779298 + AT_rich Low_complexity Low_complexity 1 22 0 11321 27 0 0 chr13 41966590 41967894 -77777004 - L1PA2 LINE L1 -1201 4945 3642 7915 19 0 0 chr13 41967894 41969094 -77775804 + L1PA2 LINE L1 4952 6151 -4 299 319 111 0 chr13 41969148 41969283 -77775615 + MIR SINE MIR 85 234 -28 2194 113 0 17 chr13 41969597 41969898 -77775000 - AluSg SINE Alu -14 296 1 29 47 0 0 chr13 41970075 41970118 -77774780 + AT_rich Low_complexity Low_complexity 1 43 0 7437 85 4 0 chr13 41970118 41971902 -77772996 - L1PA7 LINE L1 -5 6149 4358 1278 224 97 63 chr13 41973203 41973708 -77771190 - MER39 LTR ERV1 0 707 51 2624 226 79 25 chr13 41973734 41973953 -77770945 - MER72 LTR ERV1 0 722 516 2145 120 0 17 chr13 41973953 41974252 -77770646 + AluSq SINE Alu 1 294 -19 2624 226 79 25 chr13 41974252 41974717 -77770181 - MER72 LTR ERV1 -206 516 1 366 278 63 16 chr13 41974740 41974866 -77770032 + L2 LINE L2 3182 3313 0 229 321 112 15 chr13 41975196 41975330 -77769568 + MER20B DNA MER1_type 29 175 -608 2246 108 0 13 chr13 41975367 41975673 -77769225 - AluY SINE Alu -8 303 2 182 229 0 16 chr13 41975747 41975808 -77769090 + CT-rich Low_complexity Low_complexity 1 60 0 329 314 0 79 chr13 41976139 41976279 -77768619 + LTR33A LTR ERVL 5 133 -390 588 271 71 28 chr13 41976296 41976551 -77768347 + LTR33A LTR ERVL 250 515 -8 263 286 193 0 chr13 41976574 41976693 -77768205 - MIR SINE MIR -119 143 2 251 279 38 0 chr13 41976859 41976938 -77767960 + L3 LINE CR1 400 481 -1096 1966 124 67 0 chr13 41978331 41978614 -77766284 - AluSq SINE Alu -9 304 3 1123 221 109 22 chr13 41978836 41979202 -77765696 - MLT1C LTR MaLR -69 398 1 330 243 201 14 chr13 41980844 41980988 -77763910 + MER5A DNA MER1_type 17 187 -2 22 35 0 0 chr13 41981189 41981218 -77763680 + AT_rich Low_complexity Low_complexity 1 29 0 2242 104 7 0 chr13 41981901 41982199 -77762699 - AluSx SINE Alu -10 302 3 637 230 119 28 chr13 41982239 41982603 -77762295 + MLT1J2 LTR MaLR 13 396 -13 575 350 137 24 chr13 41982617 41983239 -77761659 + L3 LINE CR1 553 1244 -333 2242 196 21 0 chr13 41983246 41983720 -77761178 - L1MB7 LINE L1 -5 6179 5696 1496 113 0 0 chr13 41983750 41983954 -77760944 - L1PA8A LINE L1 -17 6114 5911 2178 176 44 26 chr13 41983958 41984002 -77760896 - L1MB7 LINE L1 -488 5690 5648 1850 158 40 53 chr13 41984002 41984382 -77760516 + THE1C LTR MaLR 1 375 0 2178 176 44 26 chr13 41984382 41985126 -77759772 - L1MB7 LINE L1 -530 5648 4890 2981 214 19 6 chr13 41985146 41985818 -77759080 - L1MB7 LINE L1 -3014 3132 2452 274 217 14 0 chr13 41985827 41985896 -77759002 - L1MEc LINE L1 -1542 4864 4795 5621 124 51 15 chr13 41985910 41986787 -77758111 - HSMAR2 DNA Mariner -2 1300 392 1176 123 22 0 chr13 41986774 41986953 -77757945 - HSMAR2 DNA Mariner -1119 183 1 * 903 282 63 36 chr13 41986954 41987508 -77757390 - L1MEc LINE L1 -1627 4779 4211 367 294 139 21 chr13 41987762 41988000 -77756898 + Charlie8 DNA MER1_type 1 266 -2151 1510 95 3 165 chr13 41989259 41989586 -77755312 + LTR12 LTR ERV1 1 274 -440 243 260 70 0 chr13 41989588 41989688 -77755210 + LTR30 LTR ERV1 537 643 -79 529 172 10 0 chr13 41989690 41989789 -77755109 + LTR12 LTR ERV1 615 714 0 944 292 123 6 chr13 41990508 41991022 -77753876 - L1MEc LINE L1 -2299 4107 3534 770 223 36 86 chr13 41991069 41991289 -77753609 + MER58A DNA MER1_type 4 212 -12 1714 255 81 50 chr13 41991309 41992369 -77752529 - L1MEc LINE L1 -2923 3483 2391 341 328 20 55 chr13 41992664 41992776 -77752122 - L1MEc LINE L1 -4576 2011 1908 2296 111 0 13 chr13 41992776 41993091 -77751807 + AluSq SINE Alu 1 311 -2 341 328 20 55 chr13 41993091 41993179 -77751719 - L1MEc LINE L1 -4679 1908 1818 324 327 40 15 chr13 41993345 41993544 -77751354 - L1MEc LINE L1 -4936 1460 1257 1079 150 0 0 chr13 41993544 41993704 -77751194 - FRAM SINE Alu -4 172 13 2302 156 28 49 chr13 41993761 41994234 -77750664 - L1MB8 LINE L1 0 6178 5716 208 246 14 29 chr13 41994366 41994435 -77750463 + T-rich Low_complexity Low_complexity 2 69 0 233 88 29 0 chr13 41994523 41994557 -77750341 - L1MEc LINE L1 -5489 907 873 265 277 39 39 chr13 41994877 41995007 -77749891 - L1MEc LINE L1 -5987 409 280 876 292 87 5 chr13 41995040 41995431 -77749467 + L1ME4a LINE L1 5502 5924 -197 314 201 97 65 chr13 41995448 41995602 -77749296 + L1ME4a LINE L1 5963 6121 0 2034 143 23 7 chr13 41996040 41996347 -77748551 + AluSx SINE Alu 1 312 0 266 107 196 0 chr13 41997231 41997287 -77747611 - L1MEc LINE L1 -5597 812 746 410 252 17 28 chr13 41997295 41997417 -77747481 - L1MEc LINE L1 -5753 656 460 682 232 57 11 chr13 41997440 41997617 -77747281 - L1MEc LINE L1 -6223 186 2 1223 284 147 8 chr13 41998236 41998980 -77745918 + L2 LINE L2 2461 3312 -1 2065 198 111 20 chr13 41999277 41999805 -77745093 - MLT1E2 LTR MaLR -1 625 72 223 348 0 0 chr13 42000305 42000374 -77744524 - MIR SINE MIR -169 93 25 2390 150 23 71 chr13 42001472 42001953 -77742945 + LTR32 LTR ERVL 14 471 0 413 353 0 0 chr13 42002141 42002257 -77742641 + L2 LINE L2 3153 3268 -4 245 328 23 8 chr13 42003234 42003365 -77741533 + CT-rich Low_complexity Low_complexity 1 133 0 558 343 33 6 chr13 42003377 42003558 -77741340 + MER91A DNA MER1_type 10 195 -1 307 246 29 0 chr13 42004071 42004140 -77740758 + L2 LINE L2 3201 3271 -1 207 181 169 60 chr13 42006167 42006250 -77738648 - MIR SINE MIR -81 127 36 2576 153 9 41 chr13 42007148 42007611 -77737287 + MLT2C2 LTR ERVL 2 449 -15 444 201 60 75 chr13 42007674 42007841 -77737057 + MIR SINE MIR 30 192 -61 2012 116 0 0 chr13 42007900 42008167 -77736731 + AluSx SINE Alu 31 297 -15 34 0 0 0 chr13 42008919 42008953 -77735945 + AT_rich Low_complexity Low_complexity 1 34 0 1013 181 88 15 chr13 42008972 42009176 -77735722 + MER20 DNA MER1_type 1 219 0 242 266 103 7 chr13 42010095 42010191 -77734707 - MIR3 SINE MIR -104 104 12 209 284 136 0 chr13 42010288 42010369 -77734529 + MIR SINE MIR 62 153 -109 391 265 122 0 chr13 42010538 42010685 -77734213 + MER103 DNA DNA 2 166 0 2311 136 67 84 chr13 42010944 42011406 -77733492 - LTR32 LTR ERVL 0 471 18 482 294 51 68 chr13 42011413 42011706 -77733192 + MLT1H LTR MaLR 249 536 -13 321 279 109 82 chr13 42011765 42012105 -77732793 - MLT1E2-int LTR MaLR 0 1371 1023 458 202 56 0 chr13 42013056 42013145 -77731753 - MLT1H LTR MaLR -13 536 443 2144 119 3 0 chr13 42013538 42013833 -77731065 + AluSx SINE Alu 2 297 -15 253 354 0 14 chr13 42014171 42014315 -77730583 + (TG)n Simple_repeat Simple_repeat 1 142 0 199 225 188 0 chr13 42015181 42015261 -77729637 - MIR SINE MIR -83 179 85 2320 97 0 3 chr13 42015410 42015710 -77729188 + AluSg SINE Alu 1 299 -11 293 326 66 22 chr13 42017414 42017595 -77727303 - MIR SINE MIR -34 228 40 1822 188 47 21 chr13 42018348 42018364 -77726534 + L1MB4 LINE L1 5788 5802 -378 2123 108 3 66 chr13 42018364 42018697 -77726201 - AluSx SINE Alu 0 312 1 1822 188 47 21 chr13 42018697 42019063 -77725835 + L1MB4 LINE L1 5802 6180 0 233 242 154 11 chr13 42019370 42019461 -77725437 - L2 LINE L2 -179 3093 2990 502 314 32 5 chr13 42020165 42020350 -77724548 + MIR SINE MIR 3 192 -70 210 256 0 0 chr13 42020414 42020457 -77724441 + L3 LINE CR1 1528 1570 -7 2181 93 29 35 chr13 42021254 42021567 -77723331 - AluSx SINE Alu -1 311 1 2043 136 30 0 chr13 42022996 42023298 -77721600 - AluSx SINE Alu -1 311 1 855 241 68 4 chr13 42024018 42024254 -77720644 + MIR SINE MIR 7 257 -5 207 290 241 35 chr13 42025022 42025167 -77719731 - MIR3 SINE MIR -12 196 22 414 265 98 7 chr13 42025830 42026117 -77718781 - L1M4 LINE L1 -2714 3432 3120 1631 194 0 25 chr13 42026125 42026440 -77718458 - AluJb SINE Alu -5 307 1 822 236 70 16 chr13 42026502 42026816 -77718082 - L1M4 LINE L1 -3132 3014 2684 378 0 0 0 chr13 42027461 42027503 -77717395 + (TG)n Simple_repeat Simple_repeat 2 43 0 242 299 25 38 chr13 42027504 42027661 -77717237 + (CAGAGA)n Simple_repeat Simple_repeat 2 156 0 493 234 48 6 chr13 42027984 42028151 -77716747 + L1ME4a LINE L1 5946 6119 -2 1975 87 4 19 chr13 42028258 42028522 -77716376 + AluSq SINE Alu 46 305 -8 326 290 93 16 chr13 42029703 42029886 -77715012 + MIR SINE MIR 16 212 -50 5526 164 17 19 chr13 42031548 42033434 -77711464 + L1PA16 LINE L1 4279 6155 -11 2213 125 0 13 chr13 42033434 42033745 -77711153 + AluSx SINE Alu 1 307 -5 631 299 111 29 chr13 42034713 42035155 -77709743 + HAL1 LINE L1 812 1289 -1218 462 285 14 0 chr13 42035470 42035614 -77709284 + (CACCAT)n Simple_repeat Simple_repeat 4 149 0 180 235 0 0 chr13 42035708 42035776 -77709122 + (CCA)n Simple_repeat Simple_repeat 1 68 0 229 345 17 35 chr13 42035782 42035956 -77708942 + (CACCAT)n Simple_repeat Simple_repeat 3 173 0 * 306 368 6 6 chr13 42035862 42036028 -77708870 + (CCA)n Simple_repeat Simple_repeat 1 166 0 476 320 6 0 chr13 42036058 42036236 -77708662 + (CCA)n Simple_repeat Simple_repeat 2 180 0 399 89 0 0 chr13 42037555 42037611 -77707287 + (T)n Simple_repeat Simple_repeat 1 56 0 315 228 32 106 chr13 42039541 42039664 -77705234 - MIR SINE MIR -70 192 79 355 219 23 78 chr13 42039796 42039924 -77704974 - MER5A DNA MER1_type -32 157 37 493 216 147 59 chr13 42039930 42039958 -77704940 + MIR SINE MIR 9 33 -229 2147 99 0 10 chr13 42039958 42040250 -77704648 + AluSg SINE Alu 1 289 -21 493 216 147 59 chr13 42040250 42040425 -77704473 + MIR SINE MIR 33 230 -32 400 264 189 0 chr13 42041008 42041156 -77703742 - MIR SINE MIR -73 189 14 263 272 111 12 chr13 42041718 42041799 -77703099 + MIR3 SINE MIR 66 154 -54 680 260 98 6 chr13 42041989 42042162 -77702736 - MIR SINE MIR -21 241 53 1974 144 3 0 chr13 42042388 42042679 -77702219 + AluJo SINE Alu 1 292 -20 188 182 23 0 chr13 42044116 42044160 -77700738 + GA-rich Low_complexity Low_complexity 1 45 0 351 270 37 37 chr13 42044178 42044341 -77700557 + GA-rich Low_complexity Low_complexity 2 164 0 267 79 0 0 chr13 42046424 42046462 -77698436 + (CA)n Simple_repeat Simple_repeat 2 39 0 1674 138 40 0 chr13 42049018 42049295 -77695603 + L1PA16 LINE L1 5692 5982 -184 924 216 0 0 chr13 42049396 42049581 -77695317 + L1PA16 LINE L1 5982 6166 0 21 36 0 0 chr13 42050216 42050244 -77694654 + AT_rich Low_complexity Low_complexity 1 28 0 1573 129 0 4 chr13 42050439 42050680 -77694218 - L1MA4 LINE L1 -11 6289 6050 234 0 0 0 chr13 42052241 42052267 -77692631 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr13 42052559 42052580 -77692318 + AT_rich Low_complexity Low_complexity 1 21 0 1644 273 182 37 chr13 42052861 42053085 -77691813 - L2 LINE L2 -41 3272 3082 2338 135 28 28 chr13 42053085 42053449 -77691449 + THE1B LTR MaLR 1 364 0 1644 273 182 37 chr13 42053449 42054642 -77690256 - L2 LINE L2 -231 3082 1652 214 181 114 133 chr13 42054714 42054819 -77690079 - MIR3 SINE MIR -24 184 82 256 357 105 32 chr13 42055668 42055945 -77688953 + L2 LINE L2 2879 3175 -97 1805 148 7 30 chr13 42056072 42056377 -77688521 - AluJo SINE Alu -11 301 4 2355 97 3 0 chr13 42059597 42059897 -77685001 + AluSx SINE Alu 1 301 -11 22 88 0 0 chr13 42060693 42060750 -77684148 + AT_rich Low_complexity Low_complexity 1 57 0 227 324 45 0 chr13 42064783 42064894 -77680004 - L2 LINE L2 -914 2400 2285 824 192 93 5 chr13 42064929 42065122 -77679776 + LTR40c LTR ERVL 61 270 -195 190 289 163 50 chr13 42066172 42066473 -77678425 + L2 LINE L2 1755 2089 -1225 314 327 29 0 chr13 42066729 42066833 -77678065 + MIR SINE MIR 47 153 -55 2336 114 0 0 chr13 42067000 42067306 -77677592 + AluSx SINE Alu 1 306 -6 843 161 0 0 chr13 42067609 42067733 -77677165 - FLAM_C SINE Alu -8 125 2 2763 13 0 0 chr13 42067934 42068236 -77676662 - AluYa5 SINE Alu -9 302 1 22 35 0 0 chr13 42068241 42068270 -77676628 + AT_rich Low_complexity Low_complexity 1 29 0 228 226 170 71 chr13 42068733 42068945 -77675953 - L1ME4a LINE L1 0 6121 5889 244 262 138 71 chr13 42070051 42070276 -77674622 - MIR SINE MIR 0 262 23 203 231 15 15 chr13 42070846 42070911 -77673987 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 815 262 17 0 chr13 42070990 42071162 -77673736 + MER5A DNA MER1_type 12 186 -3 198 302 75 0 chr13 42071227 42071280 -77673618 + MIR3 SINE MIR 132 188 -20 362 258 67 0 chr13 42074633 42074753 -77670145 + L1ME4a LINE L1 5695 5822 -299 5539 182 67 10 chr13 42074757 42077484 -77667414 + L1MA4 LINE L1 3310 6293 -7 499 260 141 0 chr13 42077466 42077708 -77667190 + L1ME4a LINE L1 5800 6075 -46 * 234 313 25 25 chr13 42079017 42079097 -77665801 + L2 LINE L2 3151 3230 -42 320 273 175 7 chr13 42079163 42079317 -77665581 - MIR SINE MIR -81 181 2 2195 98 7 23 chr13 42079520 42079825 -77665073 - AluSg SINE Alu -10 300 1 439 219 190 83 chr13 42081477 42081625 -77663273 + L1ME4a LINE L1 5656 5787 -334 3986 14 0 0 chr13 42081625 42082051 -77662847 + L1PA2 LINE L1 5727 6152 -3 439 219 190 83 chr13 42082051 42082144 -77662754 + L1ME4a LINE L1 5787 5869 -252 186 43 0 0 chr13 42082144 42082167 -77662731 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 439 219 190 83 chr13 42082167 42082335 -77662563 + L1ME4a LINE L1 5869 6110 -11 26 30 0 0 chr13 42082456 42082489 -77662409 + AT_rich Low_complexity Low_complexity 1 33 0 1191 155 204 12 chr13 42082583 42082828 -77662070 - AluSg1 SINE Alu -17 292 1 295 280 93 34 chr13 42082922 42083040 -77661858 - MIR SINE MIR -126 136 12 193 218 0 55 chr13 42083602 42083657 -77661241 - MIR SINE MIR -29 233 182 358 231 9 37 chr13 42083697 42083805 -77661093 - MIR SINE MIR -41 221 117 433 264 50 14 chr13 42084181 42084321 -77660577 - MIR SINE MIR -66 196 52 243 240 27 116 chr13 42084382 42084528 -77660370 + L2 LINE L2 3173 3305 -8 346 328 31 36 chr13 42091261 42091453 -77653445 + L1ME4a LINE L1 5726 5916 -205 189 0 0 0 chr13 42091718 42091739 -77653159 + (CA)n Simple_repeat Simple_repeat 2 22 0 368 138 0 50 chr13 42092144 42092224 -77652674 - L1PA3 LINE L1 -1 6154 6079 415 372 92 26 chr13 42092268 42092658 -77652240 - L1MC/D LINE L1 -2028 5780 5365 22 0 0 0 chr13 42092663 42092685 -77652213 + AT_rich Low_complexity Low_complexity 1 22 0 583 257 0 48 chr13 42092693 42092880 -77652018 + MER5B DNA MER1_type 1 178 0 223 396 0 0 chr13 42092906 42093002 -77651896 + L2 LINE L2 1822 1917 -1397 231 291 15 37 chr13 42093017 42093151 -77651747 + L2 LINE L2 2150 2280 -1034 197 313 0 31 chr13 42093552 42093607 -77651291 + L2 LINE L2 2980 3032 -240 512 365 26 0 chr13 42093607 42093796 -77651102 - MER91A DNA MER1_type -2 194 1 225 132 0 0 chr13 42093971 42094009 -77650889 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 188 234 0 43 chr13 42094999 42095046 -77649852 - MIR SINE MIR -115 147 103 294 29 0 0 chr13 42095625 42095660 -77649238 + (CA)n Simple_repeat Simple_repeat 2 36 0 309 228 69 40 chr13 42095742 42095843 -77649055 - L2 LINE L2 0 3272 3169 2342 190 168 25 chr13 42098000 42098767 -77646131 + MER97b DNA MER1_type? 2 878 -175 414 238 82 34 chr13 42098865 42099071 -77645827 + MER97c DNA MER1_type? 870 1085 -5 191 290 120 22 chr13 42099760 42099868 -77645030 - MIR SINE MIR -62 146 44 265 341 40 16 chr13 42099971 42100097 -77644801 - L3 LINE CR1 -1108 469 341 545 261 73 58 chr13 42102068 42102494 -77642404 - L1M4 LINE L1 -2130 4016 3581 1792 137 87 0 chr13 42102494 42102771 -77642127 - AluJb SINE Alu -7 305 5 545 261 73 58 chr13 42102771 42102807 -77642091 - L1M4 LINE L1 -2565 3581 3547 420 252 122 34 chr13 42154749 42154896 -77590002 + MLT1J2 LTR MaLR 284 443 -7 917 193 21 11 chr13 42154897 42155084 -77589814 - MER5A DNA MER1_type 0 189 1 319 263 44 44 chr13 42155415 42155529 -77589369 - MIR SINE MIR -30 232 119 476 302 34 7 chr13 42158480 42158629 -77586269 + MER5A DNA MER1_type 35 187 -2 408 149 284 35 chr13 42159806 42159947 -77584951 - MER5B DNA MER1_type 0 178 3 2095 122 20 0 chr13 42160194 42160488 -77584410 - AluSx SINE Alu -10 302 3 2338 93 13 3 chr13 42161092 42161393 -77583505 + AluSc SINE Alu 3 306 -3 238 49 24 24 chr13 42161871 42161912 -77582986 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 251 207 207 35 chr13 42162413 42162529 -77582369 + MIR SINE MIR 63 198 -64 186 283 50 0 chr13 42162608 42162668 -77582230 - L2 LINE L2 0 3272 3210 33 43 0 0 chr13 42164681 42164728 -77580170 + AT_rich Low_complexity Low_complexity 1 47 0 425 288 140 14 chr13 42164758 42165043 -77579855 - L1ME4a LINE L1 -74 6047 5727 200 200 0 0 chr13 42167938 42167973 -77576925 + A-rich Low_complexity Low_complexity 2 36 0 29 28 0 0 chr13 42168701 42168737 -77576161 + AT_rich Low_complexity Low_complexity 1 36 0 2511 64 0 0 chr13 42168892 42169187 -77575711 + AluY SINE Alu 1 295 -16 306 204 11 102 chr13 42169936 42170024 -77574874 - MIR SINE MIR -10 252 173 333 255 0 0 chr13 42170137 42170235 -77574663 + GA-rich Low_complexity Low_complexity 1 98 0 1075 136 15 97 chr13 42172319 42172525 -77572373 - MER5A DNA MER1_type 0 189 1 477 227 162 25 chr13 42173843 42174041 -77570857 + MIR SINE MIR 33 257 -5 344 296 150 23 chr13 42174035 42174255 -77570643 + MIR SINE MIR 15 262 0 * 186 103 0 0 chr13 42174308 42174337 -77570561 + (CA)n Simple_repeat Simple_repeat 1 29 0 346 363 76 56 chr13 42179994 42180297 -77564601 - L2 LINE L2 0 3272 2964 330 221 137 30 chr13 42180627 42180758 -77564140 - L2 LINE L2 -928 2386 2242 206 146 0 24 chr13 42180890 42180931 -77563967 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2202 131 34 0 chr13 42183331 42183659 -77561239 - MER1B DNA MER1_type 0 339 1 419 121 55 33 chr13 42184188 42184279 -77560619 - L1MC4a LINE L1 -1873 5935 5843 253 285 60 26 chr13 42184282 42184433 -77560465 - L1MC4a LINE L1 -400 5721 5566 2257 96 7 0 chr13 42184798 42185091 -77559807 - AluSx SINE Alu -17 295 1 571 312 30 30 chr13 42185111 42185157 -77559741 - MIR SINE MIR -15 247 202 989 217 27 0 chr13 42185157 42185341 -77559557 + MER5A DNA MER1_type 1 189 0 571 312 30 30 chr13 42185341 42185531 -77559367 - MIR SINE MIR -59 203 11 244 301 211 35 chr13 42185564 42185763 -77559135 - L2 LINE L2 -33 3239 3006 387 309 115 22 chr13 42186112 42186251 -77558647 + MIR3 SINE MIR 35 186 -22 329 212 0 0 chr13 42186264 42186330 -77558568 - MER58 DNA MER1_type 0 2420 2355 219 69 0 0 chr13 42186937 42186966 -77557932 + (A)n Simple_repeat Simple_repeat 1 29 0 206 250 0 21 chr13 42187494 42187542 -77557356 + L2 LINE L2 3263 3309 -4 508 303 12 18 chr13 42187898 42188063 -77556835 - MIR3 SINE MIR -7 201 38 191 263 184 18 chr13 42188660 42188774 -77556124 - L2 LINE L2 -225 3047 2915 231 36 0 0 chr13 42188907 42188935 -77555963 + (CA)n Simple_repeat Simple_repeat 2 29 0 521 269 64 18 chr13 42188937 42189108 -77555790 + MIR3 SINE MIR 21 199 -9 2692 39 0 0 chr13 42189845 42190153 -77554745 - AluY SINE Alu -3 308 1 418 310 131 34 chr13 42192147 42192184 -77552714 - L2 LINE L2 -176 3137 3105 2373 79 3 0 chr13 42192184 42192476 -77552422 + AluY SINE Alu 1 293 -18 418 310 131 34 chr13 42192476 42192831 -77552067 - L2 LINE L2 -208 3105 2705 465 275 88 92 chr13 42192888 42193401 -77551497 + MLT1J LTR MaLR 1 511 0 396 345 71 16 chr13 42193418 42193673 -77551225 - L2 LINE L2 -729 2585 2317 285 217 67 0 chr13 42197035 42197095 -77547803 - L2 LINE L2 -3 3269 3206 295 320 89 92 chr13 42199167 42199483 -77545415 + L2 LINE L2 2831 3145 -127 3087 162 19 32 chr13 42199598 42200130 -77544768 + Tigger7 DNA MER2_type 1 525 -208 695 120 0 0 chr13 42200124 42200216 -77544682 + Tigger7 DNA MER2_type 2396 2487 0 * 316 256 264 0 chr13 42200759 42200888 -77544010 + MER5A DNA MER1_type 27 189 0 346 154 10 135 chr13 42201225 42201329 -77543569 + LTR37A LTR ERV1 94 184 -242 693 179 37 0 chr13 42201350 42201484 -77543414 + LTR37A LTR ERV1 288 426 0 2418 80 3 0 chr13 42201613 42201913 -77542985 - AluSp SINE Alu -12 301 1 4173 11 0 4 chr13 42202557 42203050 -77541848 - L1PA2 LINE L1 0 6155 5702 21 0 0 0 chr13 42204073 42204094 -77540804 + AT_rich Low_complexity Low_complexity 1 21 0 272 234 85 78 chr13 42204126 42204267 -77540631 + L2 LINE L2 3171 3312 -1 182 74 0 37 chr13 42204390 42204417 -77540481 - L2 LINE L2 -20 3252 3227 235 312 62 63 chr13 42205758 42206134 -77538764 + L2 LINE L2 2675 3091 -181 1053 180 115 14 chr13 42209451 42209668 -77535230 - MER8 DNA MER2_type 0 239 1 493 299 7 0 chr13 42209769 42209913 -77534985 - MIR SINE MIR -2 260 116 306 0 0 0 chr13 42213325 42213359 -77531539 + (CA)n Simple_repeat Simple_repeat 2 35 0 185 297 0 31 chr13 42213459 42213523 -77531375 + L3b LINE CR1 1368 1429 -154 230 147 0 0 chr13 42214123 42214157 -77530741 + MARNA DNA Mariner 75 108 -478 240 292 22 11 chr13 42214184 42214273 -77530625 + MIR3 SINE MIR 115 204 -4 285 308 29 19 chr13 42214374 42214478 -77530420 - MIR SINE MIR -111 151 47 237 216 112 64 chr13 42214626 42214751 -77530147 + MARNA DNA Mariner 407 537 -49 2309 85 3 7 chr13 42217451 42217744 -77527154 - AluY SINE Alu -19 292 1 193 298 0 18 chr13 42217758 42217815 -77527083 + MIR3 SINE MIR 105 160 -48 659 273 14 43 chr13 42217883 42218092 -77526806 + MIR SINE MIR 58 260 -2 251 349 112 13 chr13 42218196 42218348 -77526550 - L2 LINE L2 -2 3270 3104 1961 175 51 66 chr13 42218428 42218896 -77526002 + MLT1C LTR MaLR 4 464 -3 190 194 0 60 chr13 42218924 42218991 -77525907 - L2 LINE L2 -209 3063 3001 652 268 18 0 chr13 42219934 42220098 -77524800 - MIR3 SINE MIR -1 207 41 348 335 42 32 chr13 42220141 42220425 -77524473 - L3 LINE CR1 -110 1467 1181 275 217 145 26 chr13 42220680 42220832 -77524066 - L3 LINE CR1 -607 970 801 2406 74 0 0 chr13 42221254 42221550 -77523348 + AluY SINE Alu 1 296 -15 218 370 92 8 chr13 42223098 42223217 -77521681 + L2 LINE L2 3143 3271 -1 483 230 7 61 chr13 42224088 42224236 -77520662 + MIR SINE MIR 113 252 -10 204 200 0 0 chr13 42224743 42224788 -77520110 + (CA)n Simple_repeat Simple_repeat 1 45 0 488 111 12 0 chr13 42225226 42225307 -77519591 + (TTCCC)n Simple_repeat Simple_repeat 3 84 0 314 96 0 19 chr13 42225339 42225391 -77519507 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2202 133 3 0 chr13 42225402 42225711 -77519187 - AluJb SINE Alu 0 312 3 227 271 0 0 chr13 42226398 42226457 -77518441 + GA-rich Low_complexity Low_complexity 1 59 0 237 307 150 20 chr13 42226601 42226754 -77518144 - L2 LINE L2 0 3272 3100 211 218 0 18 chr13 42226834 42226889 -77518009 + L2 LINE L2 3173 3226 -46 1808 171 38 97 chr13 42228214 42228635 -77516263 + MSTD LTR MaLR 1 396 0 2910 229 62 28 chr13 42229207 42229971 -77514927 + L1MEc LINE L1 36 825 -5571 1535 236 41 41 chr13 42229978 42230439 -77514459 + MLT1D LTR MaLR 43 503 -2 2785 266 37 20 chr13 42230454 42231565 -77513333 + L1MEc LINE L1 816 1945 -4451 5838 237 70 29 chr13 42231594 42233624 -77511274 + L1MEc LINE L1 2101 4185 -2030 891 212 59 47 chr13 42233630 42233977 -77510921 + L1ME1 LINE L1 5829 6331 -3 779 273 97 2 chr13 42235156 42235378 -77509520 + MIR SINE MIR 11 262 0 406 328 64 0 chr13 42235566 42235737 -77509161 - MIR SINE MIR -2 260 79 316 283 60 33 chr13 42236782 42236966 -77507932 + L1ME4a LINE L1 5827 6015 -106 24 32 0 0 chr13 42237011 42237042 -77507856 + AT_rich Low_complexity Low_complexity 1 31 0 2083 141 0 0 chr13 42237052 42237357 -77507541 + AluSx SINE Alu 1 305 -7 967 303 80 34 chr13 42238208 42238683 -77506215 - L2 LINE L2 0 3313 2817 451 225 12 12 chr13 42238842 42239011 -77505887 + (CATATA)n Simple_repeat Simple_repeat 4 172 0 202 346 29 37 chr13 42239854 42239990 -77504908 - L2 LINE L2 -178 3094 2960 246 284 59 0 chr13 42240376 42240478 -77504420 + L1ME LINE L1 5638 5745 -376 240 244 78 11 chr13 42240571 42240661 -77504237 + L1ME LINE L1 5532 5627 -494 264 239 15 0 chr13 42240807 42240874 -77504024 - MIR SINE MIR -98 164 97 1021 319 124 35 chr13 42242208 42243476 -77501422 + L2 LINE L2 1832 3219 -94 2068 92 0 54 chr13 42243565 42243860 -77501038 + AluSq SINE Alu 1 279 -34 305 159 16 0 chr13 42244718 42244781 -77500117 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 2398 164 60 2 chr13 42244948 42245351 -77499547 + MSTB LTR MaLR 1 426 0 337 301 128 8 chr13 42246086 42246219 -77498679 + MER117 DNA MER1_type 7 155 -42 1863 158 3 30 chr13 42246403 42246707 -77498191 + AluJb SINE Alu 1 296 -16 2241 91 7 3 chr13 42247553 42247849 -77497049 - AluSq SINE Alu -16 297 1 2083 165 36 17 chr13 42248985 42249343 -77495555 - MLT1A1 LTR MaLR 0 365 1 335 209 15 0 chr13 42249694 42249761 -77495137 + Tigger2 DNA MER2_type 2 69 -2649 * 2575 157 11 27 chr13 42249752 42249962 -77494936 + Tigger2 DNA MER2_type 2274 2486 -232 1670 164 55 10 chr13 42249962 42250255 -77494643 - AluJb SINE Alu -6 306 1 2575 157 11 27 chr13 42250255 42250495 -77494403 + Tigger2 DNA MER2_type 2486 2717 -1 404 237 137 8 chr13 42250788 42250919 -77493979 - MIR SINE MIR -86 176 29 189 318 199 26 chr13 42251024 42251568 -77493330 + L2 LINE L2 864 1501 -1813 515 290 120 14 chr13 42252080 42252297 -77492601 + MIR SINE MIR 23 262 0 2935 258 52 22 chr13 42252404 42253061 -77491837 + L1MEc LINE L1 35 730 -5666 207 0 0 0 chr13 42253061 42253084 -77491814 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2935 258 52 22 chr13 42253084 42253373 -77491525 + L1MEc LINE L1 730 1009 -5387 219 252 39 10 chr13 42254164 42254267 -77490631 + (TA)n Simple_repeat Simple_repeat 2 107 0 23 0 0 0 chr13 42254437 42254460 -77490438 + AT_rich Low_complexity Low_complexity 1 23 0 1694 169 32 23 chr13 42254728 42255036 -77489862 + AluJb SINE Alu 1 311 -1 192 200 25 0 chr13 42255115 42255155 -77489743 + L2 LINE L2 3210 3250 -22 192 380 0 0 chr13 42255659 42255709 -77489189 + L2 LINE L2 3005 3054 -259 656 291 102 52 chr13 42256523 42257065 -77487833 + L2 LINE L2 2197 2765 -549 207 320 301 0 chr13 42257125 42257228 -77487670 + L2 LINE L2 3137 3270 -2 2568 47 0 3 chr13 42257660 42257960 -77486938 - AluY SINE Alu -12 299 1 1180 35 42 14 chr13 42258601 42258744 -77486154 - L1PA8 LINE L1 -8 6164 6018 395 254 37 15 chr13 42258758 42258892 -77486006 - MER103 DNA DNA -8 158 22 306 246 72 0 chr13 42259612 42259681 -77485217 + L3 LINE CR1 1478 1551 -26 274 342 34 0 chr13 42259851 42260000 -77484898 + L1ME LINE L1 4736 4889 -1257 22 0 0 0 chr13 42260208 42260230 -77484668 + AT_rich Low_complexity Low_complexity 1 22 0 381 321 37 0 chr13 42260413 42260575 -77484323 + L1ME LINE L1 5564 5731 -390 278 275 169 50 chr13 42260634 42260794 -77484104 - MIR SINE MIR -10 252 74 27 0 0 0 chr13 42260860 42260887 -77484011 + AT_rich Low_complexity Low_complexity 1 27 0 333 118 0 0 chr13 42261770 42261821 -77483077 + (CA)n Simple_repeat Simple_repeat 2 52 0 234 214 265 20 chr13 42262064 42262162 -77482736 + L2 LINE L2 3179 3300 -13 183 80 0 0 chr13 42262162 42262187 -77482711 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 246 318 139 16 chr13 42262578 42262707 -77482191 + MIR SINE MIR 10 154 -108 357 86 0 0 chr13 42264852 42264910 -77479988 + (TA)n Simple_repeat Simple_repeat 1 58 0 25 31 0 0 chr13 42265133 42265165 -77479733 + AT_rich Low_complexity Low_complexity 1 32 0 6109 58 6 323 chr13 42266411 42268396 -77476502 - SVA Other Other 0 1386 32 271 0 0 49 chr13 42268397 42268438 -77476460 + (GGGAGA)n Simple_repeat Simple_repeat 1 39 0 2127 118 7 0 chr13 42269095 42269382 -77475516 + AluSx SINE Alu 1 289 -23 2284 114 7 0 chr13 42269414 42269721 -77475177 + AluSx SINE Alu 1 309 -3 1260 108 0 0 chr13 42270103 42270269 -77474629 + AluSg SINE Alu 38 203 -107 1372 196 0 91 chr13 42270409 42270751 -77474147 + AluJo SINE Alu 1 311 -1 2119 124 3 0 chr13 42270858 42271149 -77473749 + AluSx SINE Alu 1 292 -20 483 176 24 0 chr13 42272397 42272482 -77472416 - Tigger5 DNA MER2_type 0 2323 2237 546 193 0 0 chr13 42272493 42272581 -77472317 + Tigger5 DNA MER2_type 1 88 -2235 250 175 0 0 chr13 42272644 42272684 -77472214 - Tigger5 DNA MER2_type -2283 40 1 186 289 173 41 chr13 42272806 42273003 -77471895 + L2 LINE L2 3074 3296 -17 40 49 0 0 chr13 42273003 42273064 -77471834 + AT_rich Low_complexity Low_complexity 1 61 0 303 274 24 0 chr13 42273089 42273173 -77471725 + GA-rich Low_complexity Low_complexity 3 88 0 361 247 12 0 chr13 42274148 42274233 -77470665 + Tigger7 DNA MER2_type 2402 2487 0 361 197 82 109 chr13 42278480 42278627 -77466271 - MIR SINE MIR -81 181 39 328 340 54 14 chr13 42278762 42278909 -77465989 - L2 LINE L2 0 3313 3161 392 320 155 31 chr13 42282353 42282805 -77462093 + L2 LINE L2 2782 3288 -25 2850 150 78 23 chr13 42282894 42283420 -77461478 + MER74A LTR ERVL 2 556 -2 1997 135 10 16 chr13 42283527 42283839 -77461059 + AluSx SINE Alu 1 310 -2 822 133 66 46 chr13 42284127 42284214 -77460684 + L1MC1 LINE L1 6161 6254 -79 2625 119 86 28 chr13 42284214 42284644 -77460254 - MSTB2 LTR MaLR -2 455 1 822 133 66 46 chr13 42284644 42284707 -77460191 + L1MC1 LINE L1 6254 6314 -19 394 195 0 26 chr13 42285795 42285872 -77459026 - MER116 DNA Mariner -5 75 1 225 0 0 0 chr13 42286106 42286131 -77458767 + (T)n Simple_repeat Simple_repeat 1 25 0 200 317 50 0 chr13 42288896 42288956 -77455942 - L2 LINE L2 -3 3310 3248 210 360 138 14 chr13 42289306 42289595 -77455303 - L2 LINE L2 -519 2795 2471 647 209 27 75 chr13 42289860 42290047 -77454851 - MER5B DNA MER1_type 0 178 1 1179 97 6 45 chr13 42290210 42290386 -77454512 - AluSq SINE Alu -11 302 134 1899 92 110 14 chr13 42290386 42290668 -77454230 - AluSg1 SINE Alu 0 309 1 293 366 71 0 chr13 42290885 42290997 -77453901 + L2 LINE L2 3134 3253 -19 993 168 77 10 chr13 42292067 42292275 -77452623 + L1MC4a LINE L1 7306 7527 -281 183 390 26 39 chr13 42294644 42294798 -77450100 - L2 LINE L2 -5 3267 3116 270 289 99 21 chr13 42294877 42295019 -77449879 - L2 LINE L2 -192 3080 2928 290 260 130 84 chr13 42296097 42296251 -77448647 + MIR3 SINE MIR 43 203 -5 2450 74 0 0 chr13 42296294 42296591 -77448307 - AluY SINE Alu -14 297 1 186 224 75 45 chr13 42297446 42297513 -77447385 - L2 LINE L2 -16 3297 3229 224 286 0 0 chr13 42298238 42298287 -77446611 + L2 LINE L2 3246 3294 -19 377 161 74 12 chr13 42298374 42298455 -77446443 + L2 LINE L2 3223 3308 -5 21 0 0 0 chr13 42299436 42299457 -77445441 + AT_rich Low_complexity Low_complexity 1 21 0 2561 199 18 32 chr13 42301526 42302084 -77442814 - MER74A LTR ERVL -6 552 3 308 291 284 0 chr13 42302122 42302263 -77442635 - MER5A DNA MER1_type 0 189 9 349 302 81 29 chr13 42302338 42302510 -77442388 - MIR SINE MIR -16 246 66 735 265 113 4 chr13 42302972 42303210 -77441688 - L2 LINE L2 -50 3263 3000 3030 75 2 0 chr13 42303291 42303691 -77441207 - L1PA7 LINE L1 -1 6153 5753 2072 125 3 0 chr13 42303701 42303990 -77440908 - AluSx SINE Alu -22 290 1 198 0 0 0 chr13 42304548 42304570 -77440328 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 413 255 21 55 chr13 42305301 42305446 -77439452 - HAL1 LINE L1 -7 2500 2361 2587 253 80 50 chr13 42305609 42306774 -77438124 - HAL1 LINE L1 -115 2392 1193 2095 158 6 28 chr13 42306802 42307163 -77437735 + THE1B LTR MaLR 1 353 -11 431 243 83 74 chr13 42307173 42307498 -77437400 - HAL1 LINE L1 -1358 1149 822 323 319 93 54 chr13 42308135 42308339 -77436559 - HAL1 LINE L1 -2294 213 2 253 280 27 0 chr13 42308642 42308717 -77436181 + GA-rich Low_complexity Low_complexity 4 80 0 213 214 0 0 chr13 42309081 42309123 -77435775 + (TATG)n Simple_repeat Simple_repeat 2 43 0 223 309 155 0 chr13 42309441 42309525 -77435373 + MIR SINE MIR 152 248 -14 2137 113 0 7 chr13 42310881 42311172 -77433726 + AluSg SINE Alu 2 290 -20 403 222 0 0 chr13 42311604 42311676 -77433222 + MER81 DNA DNA 1 72 -42 2492 59 20 0 chr13 42311688 42311992 -77432906 + AluY SINE Alu 2 311 0 395 258 168 39 chr13 42312208 42312363 -77432535 - MER5B DNA MER1_type -2 176 2 203 324 54 14 chr13 42312632 42312706 -77432192 - L2 LINE L2 -40 3273 3197 403 348 108 42 chr13 42315051 42315404 -77429494 - L2 LINE L2 0 3272 2897 3911 203 116 78 chr13 42315748 42316310 -77428588 - L1MC3 LINE L1 -12 7773 7234 312 212 61 0 chr13 42316310 42316376 -77428522 - MLT1F1 LTR MaLR -453 114 45 3911 203 116 78 chr13 42316376 42317064 -77427834 - L1MC3 LINE L1 -551 7234 6408 22 0 0 0 chr13 42317095 42317117 -77427781 + AT_rich Low_complexity Low_complexity 1 22 0 416 242 102 16 chr13 42317170 42317298 -77427600 + MLT1J2 LTR MaLR 35 173 -277 791 268 64 38 chr13 42317372 42317793 -77427105 + L1ME2 LINE L1 3873 4304 -1842 4125 215 84 41 chr13 42317798 42319353 -77425545 - L1MB7 LINE L1 -1 6168 4681 2244 87 3 3 chr13 42319353 42319639 -77425259 - AluSc SINE Alu -13 296 11 4125 215 84 41 chr13 42319639 42319679 -77425219 - L1MB7 LINE L1 -1488 4681 4644 782 160 0 8 chr13 42319679 42319810 -77425088 + FLAM_C SINE Alu 4 133 0 4125 215 84 41 chr13 42319810 42320631 -77424267 - L1MB7 LINE L1 -1525 4644 3649 2457 242 85 49 chr13 42320635 42321407 -77423491 + L1ME2 LINE L1 4322 5065 -1099 1179 117 0 0 chr13 42321407 42321587 -77423311 + (TA)n Simple_repeat Simple_repeat 1 180 0 2457 242 85 49 chr13 42321587 42322590 -77422308 + L1ME2 LINE L1 5065 6154 -10 2311 110 0 0 chr13 42322697 42323006 -77421892 + AluY SINE Alu 1 309 -2 21 57 0 0 chr13 42323131 42323166 -77421732 + AT_rich Low_complexity Low_complexity 1 35 0 203 100 0 50 chr13 42323179 42323219 -77421679 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 433 271 149 11 chr13 42323221 42323402 -77421496 + MIR SINE MIR 57 262 0 204 40 0 0 chr13 42326963 42326988 -77417910 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 42328212 42328233 -77416665 + AT_rich Low_complexity Low_complexity 1 21 0 227 223 0 96 chr13 42328236 42328330 -77416568 + L1ME4a LINE L1 5880 5964 -157 191 111 0 28 chr13 42328333 42328369 -77416529 + (TA)n Simple_repeat Simple_repeat 1 35 0 252 59 0 0 chr13 42329223 42329257 -77415641 + (T)n Simple_repeat Simple_repeat 1 34 0 2149 121 0 9 chr13 42331092 42331407 -77413491 - AluSq SINE Alu -1 312 1 231 288 0 17 chr13 42331407 42331466 -77413432 + MER20B DNA MER1_type 122 179 -604 264 333 33 8 chr13 42331556 42331676 -77413222 + L3b LINE CR1 1108 1230 -353 2179 170 30 24 chr13 42331806 42332271 -77412627 + L1MB1 LINE L1 3287 3754 -2392 4456 180 34 9 chr13 42332432 42333820 -77411078 + L1MB1 LINE L1 4744 6166 -2 227 343 52 52 chr13 42333854 42333988 -77410910 + L3b LINE CR1 1443 1576 -7 186 43 0 0 chr13 42334622 42334645 -77410253 + (CA)n Simple_repeat Simple_repeat 2 24 0 276 296 91 15 chr13 42335615 42335747 -77409151 - MIR SINE MIR -9 253 112 1931 147 6 13 chr13 42336962 42337097 -77407801 + AluSx SINE Alu 1 135 -177 2386 88 0 0 chr13 42337097 42337402 -77407496 + AluY SINE Alu 1 305 -6 1931 147 6 13 chr13 42337402 42337580 -77407318 + AluSx SINE Alu 135 312 0 565 311 96 0 chr13 42337842 42338051 -77406847 + MIR SINE MIR 26 254 -8 2337 91 7 3 chr13 42338059 42338356 -77406542 + AluSx SINE Alu 1 298 -14 1104 198 9 91 chr13 42339353 42339672 -77405226 + MLT1A1 LTR MaLR 56 348 -17 6438 205 98 60 chr13 42339682 42341110 -77403788 + MLT1A1-int LTR MaLR 1 1503 -232 1928 151 0 10 chr13 42341110 42341408 -77403490 - AluSx SINE Alu -15 297 3 6438 205 98 60 chr13 42341408 42341651 -77403247 + MLT1A1-int LTR MaLR 1503 1735 0 1081 223 57 79 chr13 42341654 42342022 -77402876 + MLT1A1 LTR MaLR 4 363 -2 2452 164 31 2 chr13 42342133 42342547 -77402351 - MSTB LTR MaLR 0 426 1 1972 128 24 0 chr13 42342655 42342944 -77401954 + AluSx SINE Alu 1 296 -16 795 265 38 93 chr13 42343257 42343548 -77401350 + MLT1E LTR MaLR 231 505 -88 484 288 118 26 chr13 42343645 42343951 -77400947 + MER93a LTR ERV1 58 391 -11 2191 119 58 73 chr13 42343958 42344371 -77400527 + MLT2D LTR ERVL 2 408 -6 2252 198 19 50 chr13 42344374 42344839 -77400059 - MLT2B3 LTR ERVL -23 531 81 349 97 28 83 chr13 42344951 42344982 -77399916 - MLT2B3 LTR ERVL -486 68 37 1974 132 46 32 chr13 42344982 42345352 -77399546 - THE1C LTR MaLR 0 375 1 349 97 28 83 chr13 42345352 42345392 -77399506 - MLT2B3 LTR ERVL -517 37 1 1918 240 107 56 chr13 42346364 42347544 -77397354 - L1ME2 LINE L1 -15 6149 4866 1704 176 13 10 chr13 42347544 42347850 -77397048 - AluJo SINE Alu -5 307 1 1918 240 107 56 chr13 42347850 42348205 -77396693 - L1ME2 LINE L1 -1298 4866 4530 1407 246 101 58 chr13 42348210 42349001 -77395897 - L1ME2 LINE L1 -1778 4368 3544 21 36 0 0 chr13 42400699 42400727 -77344171 + AT_rich Low_complexity Low_complexity 1 28 0 454 246 85 106 chr13 42400934 42401170 -77343728 + MIR SINE MIR 21 251 -11 1583 169 86 0 chr13 42401318 42401585 -77343313 + AluJb SINE Alu 1 290 -22 360 133 0 0 chr13 42401585 42401645 -77343253 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 319 172 62 0 chr13 42401660 42401724 -77343174 + L1M1 LINE L1 14 81 -7484 * 5773 179 36 36 chr13 42401722 42403755 -77341143 + L1M1 LINE L1 3128 5183 -2382 1214 112 28 0 chr13 42403755 42403970 -77340928 + L1M1 LINE L1 5854 6074 -1491 373 65 65 0 chr13 42403970 42404030 -77340868 + L1MA3 LINE L1 6240 6305 0 699 317 106 26 chr13 42404508 42404924 -77339974 - L2 LINE L2 0 3313 2865 22 35 0 0 chr13 42406023 42406052 -77338846 + AT_rich Low_complexity Low_complexity 1 29 0 340 211 11 22 chr13 42408423 42408513 -77336385 + MER117 DNA MER1_type 5 93 -104 243 182 39 13 chr13 42408917 42408994 -77335904 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 225 293 107 27 chr13 42409600 42409675 -77335223 + L2 LINE L2 3155 3235 -37 259 328 99 59 chr13 42409687 42410261 -77334637 - L2 LINE L2 -850 2464 1868 2164 77 7 44 chr13 42411008 42411328 -77333570 + AluSp SINE Alu 1 309 0 311 246 15 0 chr13 42411383 42411448 -77333450 + MIR3 SINE MIR 117 182 -26 192 77 0 0 chr13 42411704 42411730 -77333168 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 213 39 0 0 chr13 42413231 42413257 -77331641 + (CACAA)n Simple_repeat Simple_repeat 3 28 0 521 150 8 92 chr13 42416088 42416208 -77328690 + MER33 DNA MER1_type 27 136 -188 * 613 189 27 7 chr13 42416197 42416345 -77328553 + MLT1D LTR MaLR 353 503 -2 285 200 15 0 chr13 42416345 42416410 -77328488 + MER33 DNA MER1_type 258 323 -1 354 291 34 0 chr13 42416414 42416531 -77328367 + L2 LINE L2 3192 3312 -1 276 253 0 53 chr13 42416569 42416644 -77328254 - L2 LINE L2 0 3313 3243 396 208 12 66 chr13 42416644 42416741 -77328157 + L1MB5 LINE L1 5961 6049 -125 2385 102 0 0 chr13 42416741 42417044 -77327854 - AluSx SINE Alu -9 303 1 396 208 12 66 chr13 42417044 42417066 -77327832 + L1MB5 LINE L1 6049 6071 -103 488 200 37 126 chr13 42417142 42417357 -77327541 - MLT1A1 LTR MaLR -169 196 1 421 269 149 62 chr13 42418139 42418414 -77326484 + L2 LINE L2 3015 3313 0 520 206 136 39 chr13 42418635 42418790 -77326108 + MIR SINE MIR 82 251 -11 368 369 78 18 chr13 42418799 42419016 -77325882 + L3 LINE CR1 1329 1558 -19 2828 16 0 0 chr13 42420735 42421044 -77323854 - AluYa5 SINE Alu -2 309 1 422 262 8 16 chr13 42421278 42421400 -77323498 + MER20B DNA MER1_type 58 178 -605 321 303 67 52 chr13 42421600 42421867 -77323031 + L1M4 LINE L1 2670 2940 -3206 1362 157 0 9 chr13 42422179 42422402 -77322496 - AluJo SINE Alu -5 307 87 264 158 0 0 chr13 42422587 42422644 -77322254 + (CA)n Simple_repeat Simple_repeat 2 58 0 373 267 46 59 chr13 42422644 42422947 -77321951 + L1M4 LINE L1 3524 3822 -2324 2257 198 39 6 chr13 42424569 42425058 -77319840 + MLT1D LTR MaLR 1 505 0 2304 98 0 3 chr13 42425183 42425489 -77319409 - AluSg SINE Alu -5 305 1 821 141 6 24 chr13 42425497 42425667 -77319231 - L1MA6 LINE L1 0 6300 6134 2190 89 7 36 chr13 42426403 42426705 -77318193 + AluSc SINE Alu 9 301 -8 373 344 73 38 chr13 42426840 42427128 -77317770 - L3 LINE CR1 -343 1234 937 1321 306 66 80 chr13 42428600 42429137 -77315761 + L1MEd LINE L1 23 566 -5553 1367 201 21 28 chr13 42429137 42429420 -77315478 - AluJo SINE Alu -31 281 1 1321 306 66 80 chr13 42429420 42429984 -77314914 + L1MEd LINE L1 566 1109 -5010 2100 128 0 13 chr13 42430105 42430403 -77314495 + AluSc SINE Alu 1 294 -15 719 275 107 46 chr13 42430421 42431046 -77313852 + L1ME3A LINE L1 5294 5956 -214 207 0 0 0 chr13 42433082 42433105 -77311793 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 495 0 0 0 chr13 42433282 42433337 -77311561 + (CA)n Simple_repeat Simple_repeat 2 56 0 607 295 52 19 chr13 42434166 42434376 -77310522 - MIR SINE MIR -14 248 32 352 282 8 8 chr13 42434466 42434583 -77310315 + LTR16B LTR ERVL 35 151 -313 456 77 0 0 chr13 42435025 42435090 -77309808 - L1PA6 LINE L1 -1 6153 6089 322 265 49 29 chr13 42436425 42436527 -77308371 - L2 LINE L2 -7 3265 3162 1909 147 119 16 chr13 42436527 42436915 -77307983 - MSTA LTR MaLR 0 428 1 1619 274 100 10 chr13 42437029 42437661 -77307237 + L2 LINE L2 2440 3151 -162 303 274 12 0 chr13 42437704 42437788 -77307110 - MER63A DNA MER1_type -26 184 100 476 259 38 8 chr13 42437871 42438002 -77306896 + L2 LINE L2 3178 3312 -1 16692 138 29 19 chr13 42438728 42441596 -77303302 + L1MA3 LINE L1 27 2921 -4644 371 215 56 0 chr13 42441594 42441701 -77303197 + L1MA3 LINE L1 4246 4358 -3207 * 362 236 21 126 chr13 42441865 42442056 -77302842 + L1ME LINE L1 5254 5424 -2384 255 295 38 0 chr13 42442161 42442266 -77302632 + L1ME LINE L1 5496 5604 -517 203 0 0 36 chr13 42442973 42443001 -77301897 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7560 29 18 0 chr13 42443001 42443965 -77300933 - L1PA3 LINE L1 -6 6149 5182 276 206 0 0 chr13 42443966 42444034 -77300864 + L1MA3 LINE L1 4349 4416 -3149 1456 179 19 0 chr13 42444034 42444302 -77300596 - L1MA3 LINE L1 -2094 5471 5199 6700 136 17 32 chr13 42444309 42446342 -77298556 + L1MA3 LINE L1 5486 7480 -244 1731 136 39 11 chr13 42446342 42446622 -77298276 + AluJb SINE Alu 1 288 -24 6700 136 17 32 chr13 42446622 42446864 -77298034 + L1MA3 LINE L1 7480 7724 0 195 386 68 11 chr13 42447936 42448024 -77296874 - L2 LINE L2 -32 3240 3148 278 191 0 0 chr13 42448642 42448689 -77296209 + L2 LINE L2 3210 3256 -16 436 169 102 8 chr13 42452591 42452709 -77292189 + L1MA8 LINE L1 6161 6289 -2 716 140 67 61 chr13 42452913 42453077 -77291821 + L1MB8 LINE L1 6008 6172 -6 1110 179 93 4 chr13 42453090 42453369 -77291529 + L1 LINE L1 3183 3486 -2660 1181 123 15 20 chr13 42453369 42453564 -77291334 + AluSg/x SINE Alu 115 308 -4 215 233 0 0 chr13 42454184 42454227 -77290671 + CT-rich Low_complexity Low_complexity 2 44 0 608 245 155 0 chr13 42454440 42454595 -77290303 + MER5A DNA MER1_type 11 189 0 541 254 56 0 chr13 42455023 42455165 -77289733 + MER69A DNA AcHobo 28 177 0 3755 48 0 6 chr13 42455205 42455679 -77289219 - L1PA7 LINE L1 -8 6146 5676 405 172 0 0 chr13 42455689 42455811 -77289087 + (TA)n Simple_repeat Simple_repeat 1 122 0 2161 125 3 0 chr13 42455811 42456108 -77288790 - AluSx SINE Alu -14 298 1 195 129 0 0 chr13 42456532 42456563 -77288335 + (CA)n Simple_repeat Simple_repeat 2 32 0 318 352 57 6 chr13 42456785 42456961 -77287937 - L1ME LINE L1 -320 5801 5617 14506 189 74 16 chr13 42457150 42457498 -77287400 - L1PB1 LINE L1 -316 6551 6225 234 0 0 0 chr13 42457498 42457524 -77287374 + (TTG)n Simple_repeat Simple_repeat 2 27 0 14506 189 74 16 chr13 42457524 42463355 -77281543 - L1PB1 LINE L1 -642 6225 6 9036 234 66 17 chr13 42463369 42469206 -77275692 - L1MDa LINE L1 -421 6215 17 257 194 0 30 chr13 42470427 42470494 -77274404 + (CATA)n Simple_repeat Simple_repeat 2 66 0 824 247 101 22 chr13 42470494 42470515 -77274383 - L1ME4a LINE L1 -157 5964 5946 297 109 0 0 chr13 42470515 42470561 -77274337 + (TG)n Simple_repeat Simple_repeat 2 47 0 824 247 101 22 chr13 42470561 42470855 -77274043 - L1ME4a LINE L1 -175 5946 5624 312 317 45 55 chr13 42471672 42471981 -77272917 - L1ME4a LINE L1 -801 5345 5040 2280 96 0 3 chr13 42472060 42472353 -77272545 - AluSq SINE Alu -21 292 1 30 27 0 0 chr13 42472355 42472392 -77272506 + AT_rich Low_complexity Low_complexity 1 37 0 950 321 68 14 chr13 42472755 42473257 -77271641 + L1MC4a LINE L1 5373 5901 -1907 285 29 0 0 chr13 42473287 42473321 -77271577 + (TG)n Simple_repeat Simple_repeat 1 34 0 31 26 0 0 chr13 42473549 42473587 -77271311 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 42475072 42475100 -77269798 + AT_rich Low_complexity Low_complexity 1 28 0 191 133 22 0 chr13 42475348 42475393 -77269505 + GA-rich Low_complexity Low_complexity 2 47 0 201 264 38 75 chr13 42475977 42476083 -77268815 + MIR SINE MIR 33 134 -74 263 331 90 35 chr13 42476514 42476659 -77268239 + MIR3 SINE MIR 19 171 -37 2223 91 10 3 chr13 42478626 42478924 -77265974 + AluSx SINE Alu 1 300 -12 2011 148 3 0 chr13 42479352 42479650 -77265248 + AluSx SINE Alu 1 299 -13 321 244 85 37 chr13 42479902 42480066 -77264832 + MER104 DNA Tc2 8 179 -1 21 57 0 0 chr13 42480402 42480437 -77264461 + AT_rich Low_complexity Low_complexity 1 35 0 528 122 0 0 chr13 42480460 42480542 -77264356 + (CA)n Simple_repeat Simple_repeat 2 83 0 2297 86 10 3 chr13 42481134 42481437 -77263461 - AluY SINE Alu -6 305 1 477 225 95 35 chr13 42481571 42481740 -77263158 - MIR SINE MIR -10 252 74 244 196 0 0 chr13 42483216 42483267 -77261631 + L1MC4 LINE L1 6653 6703 -1339 236 295 36 18 chr13 42483226 42483338 -77261560 - L1MC4 LINE L1 -1340 6702 6589 * 375 279 95 39 chr13 42484247 42484436 -77260462 - MIR SINE MIR -65 143 1 23 33 0 0 chr13 42484633 42484663 -77260235 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 42484753 42484774 -77260124 + AT_rich Low_complexity Low_complexity 1 21 0 1229 226 17 24 chr13 42484775 42485063 -77259835 - AluJo SINE Alu -26 286 1 1591 245 35 38 chr13 42485475 42485928 -77258970 + LTR40a LTR ERVL 68 519 0 191 312 183 0 chr13 42486525 42486618 -77258280 - MIR SINE MIR -83 125 16 708 236 15 84 chr13 42486718 42486921 -77257977 + MIR SINE MIR 8 196 -66 1879 214 47 31 chr13 42487271 42487758 -77257140 + MLT1D LTR MaLR 1 495 -10 395 267 51 90 chr13 42487854 42488165 -77256733 - L2 LINE L2 0 3313 3015 299 304 31 99 chr13 42489176 42489337 -77255561 + MIR SINE MIR 24 173 -89 670 197 88 23 chr13 42489822 42490009 -77254889 - MER58C DNA MER1_type 0 215 1 2054 112 3 10 chr13 42490162 42490457 -77254441 + AluSq SINE Alu 6 298 -15 261 224 0 31 chr13 42490822 42490920 -77253978 + GA-rich Low_complexity Low_complexity 2 96 0 2061 126 0 3 chr13 42491017 42491310 -77253588 + AluSx SINE Alu 1 292 -20 2056 108 17 7 chr13 42491310 42491598 -77253300 + AluSp SINE Alu 17 307 -6 230 376 40 0 chr13 42491811 42491912 -77252986 - MER91A DNA MER1_type -45 151 47 2260 185 12 7 chr13 42493611 42494033 -77250865 + MLT2C2 LTR ERVL 1 424 -40 23 54 0 0 chr13 42495782 42495819 -77249079 + AT_rich Low_complexity Low_complexity 1 37 0 1344 240 75 16 chr13 42497911 42498470 -77246428 - HAL1 LINE L1 -171 2336 1701 580 283 96 33 chr13 42498505 42498811 -77246087 - HAL1 LINE L1 -1164 1343 1058 2102 128 0 3 chr13 42498811 42499107 -77245791 + AluSx SINE Alu 1 295 -17 580 283 96 33 chr13 42499107 42499980 -77244918 - HAL1 LINE L1 -1449 1058 14 243 195 0 0 chr13 42501447 42501488 -77243410 - L2 LINE L2 -8 3264 3224 183 352 0 34 chr13 42503049 42503137 -77241761 + L2 LINE L2 2994 3078 -194 198 103 0 0 chr13 42503275 42503304 -77241594 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 806 109 36 7 chr13 42505596 42505734 -77239164 - Tigger1 DNA MER2_type -74 2344 2203 * 927 166 0 13 chr13 42505726 42505883 -77239015 - Tigger1 DNA MER2_type -2263 155 1 1844 185 92 14 chr13 42505894 42506327 -77238571 + MLT1C LTR MaLR 1 467 0 475 253 187 0 chr13 42507752 42507902 -77236996 + MER5A DNA MER1_type 9 186 -3 181 250 0 97 chr13 42510028 42510100 -77234798 + L2 LINE L2 3249 3313 0 2010 114 40 0 chr13 42510176 42510488 -77234410 + AluSx SINE Alu 1 323 0 1761 128 94 26 chr13 42510564 42510915 -77233983 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr13 42511526 42511559 -77233339 + AT_rich Low_complexity Low_complexity 1 33 0 738 236 62 36 chr13 42511933 42512209 -77232689 + MER39 LTR ERV1 425 707 0 492 294 78 39 chr13 42513758 42513962 -77230936 - L2 LINE L2 -3 3310 3099 657 309 240 17 chr13 42513990 42514021 -77230877 - L2 LINE L2 -351 2963 2940 2640 174 10 14 chr13 42514021 42514526 -77230372 + L1MC1 LINE L1 5830 6332 -1 657 309 240 17 chr13 42514526 42514960 -77229938 - L2 LINE L2 -374 2940 2394 274 294 0 0 chr13 42515088 42515156 -77229742 + (TA)n Simple_repeat Simple_repeat 2 69 0 203 306 26 45 chr13 42515221 42515366 -77229532 - MIR SINE MIR -63 145 24 283 311 153 22 chr13 42517279 42517462 -77227436 - MIR SINE MIR -50 212 6 345 354 67 12 chr13 42518185 42518349 -77226549 + MIR SINE MIR 28 200 -62 380 330 0 0 chr13 42519191 42519303 -77225595 + MIR3 SINE MIR 87 198 -10 819 296 20 2 chr13 42520109 42520348 -77224550 + MIR SINE MIR 4 244 -18 337 366 49 24 chr13 42520842 42521006 -77223892 - MIR3 SINE MIR -28 180 13 378 0 0 0 chr13 42521291 42521333 -77223565 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr13 42521665 42521688 -77223210 + AT_rich Low_complexity Low_complexity 1 23 0 657 36 0 0 chr13 42523634 42523718 -77221180 + AluSg/x SINE Alu 219 302 -8 324 0 0 0 chr13 42525478 42525514 -77219384 + (CA)n Simple_repeat Simple_repeat 2 37 0 472 314 35 30 chr13 42525762 42525931 -77218967 - MIR SINE MIR -51 211 42 382 322 24 97 chr13 42527257 42527630 -77217268 - L2 LINE L2 -27 3245 2900 272 257 0 40 chr13 42527667 42527741 -77217157 - L2 LINE L2 -538 2776 2706 790 318 69 40 chr13 42527835 42528029 -77216869 - L2 LINE L2 -609 2705 2518 953 243 14 9 chr13 42528029 42528251 -77216647 - MER58A DNA MER1_type -1 223 1 790 318 69 40 chr13 42528251 42528506 -77216392 - L2 LINE L2 -796 2518 2243 294 214 20 51 chr13 42528724 42528822 -77216076 - MLT1J2 LTR MaLR -354 96 2 21 36 0 0 chr13 42529845 42529873 -77215025 + AT_rich Low_complexity Low_complexity 1 28 0 2270 106 0 0 chr13 42531296 42531597 -77213301 - AluY SINE Alu -10 301 1 234 324 52 0 chr13 42531804 42531940 -77212958 + L1P LINE L1 4910 5052 -1094 329 287 231 12 chr13 42532177 42532501 -77212397 + L1ME4a LINE L1 5260 5654 -467 22 70 0 0 chr13 42532620 42532663 -77212235 + AT_rich Low_complexity Low_complexity 1 43 0 305 261 39 46 chr13 42532704 42532857 -77212041 + L1ME4a LINE L1 5964 6115 -6 304 235 0 0 chr13 42534444 42534512 -77210386 + MER92C LTR ERV1 483 550 -4 200 214 0 0 chr13 42534903 42534945 -77209953 + MIR SINE MIR 99 140 -122 2340 103 0 0 chr13 42535039 42535341 -77209557 - AluSx SINE Alu -10 302 1 3551 155 11 16 chr13 42535357 42535994 -77208904 - L1MB7 LINE L1 0 6184 5551 22 56 0 0 chr13 42536389 42536425 -77208473 + AT_rich Low_complexity Low_complexity 1 36 0 243 389 24 8 chr13 42536438 42536564 -77208334 - L2 LINE L2 -219 3053 2926 356 338 29 38 chr13 42536619 42536859 -77208039 - L2 LINE L2 -815 2499 2262 1232 134 51 24 chr13 42539414 42539667 -77205231 - L1MA4 LINE L1 -15 6285 6026 318 203 159 11 chr13 42540078 42540210 -77204688 - L1MD3 LINE L1 -11 7984 6192 5353 169 39 26 chr13 42540211 42541370 -77203528 + Ricksha_a DNA DNA 35 1176 -10 1364 191 78 58 chr13 42541377 42541791 -77203107 - L1MD3 LINE L1 -140 7855 5808 1587 203 75 17 chr13 42542126 42542262 -77202636 + MLT1A1 LTR MaLR 1 128 -237 2382 99 0 6 chr13 42542262 42542576 -77202322 + AluSq SINE Alu 1 312 -1 1587 203 75 17 chr13 42542576 42542784 -77202114 + MLT1A1 LTR MaLR 128 365 0 25 0 0 0 chr13 42543443 42543468 -77201430 + AT_rich Low_complexity Low_complexity 1 25 0 380 274 27 41 chr13 42543767 42543913 -77200985 + L1MDa LINE L1 2440 2583 -3957 512 282 135 71 chr13 42543915 42544351 -77200547 + L1ME LINE L1 141 604 -5601 247 220 77 18 chr13 42544637 42544805 -77200093 + L1ME LINE L1 2086 2263 -4133 513 132 0 0 chr13 42544816 42544892 -77200006 + AluSg/x SINE Alu 218 293 -16 198 0 0 0 chr13 42544898 42544920 -77199978 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 266 50 25 0 chr13 42544919 42544959 -77199939 + (TA)n Simple_repeat Simple_repeat 1 41 0 1904 248 84 29 chr13 42544963 42545962 -77198936 + L1ME LINE L1 2233 3286 -2929 2252 252 62 44 chr13 42545966 42547054 -77197844 + L1ME LINE L1 3669 4783 -1432 2455 66 3 0 chr13 42547054 42547357 -77197541 + AluSc SINE Alu 5 308 -1 2252 252 62 44 chr13 42547357 42547492 -77197406 + L1ME LINE L1 4783 4914 -1301 4183 149 13 4 chr13 42547492 42548197 -77196701 + MER50 LTR ERV1 1 711 -23 499 237 89 21 chr13 42548206 42548529 -77196369 + L1ME LINE L1 4919 5284 -931 290 211 94 35 chr13 42548653 42548824 -77196074 + L1ME LINE L1 5325 5506 -727 422 279 87 38 chr13 42548839 42549022 -77195876 + L1M4 LINE L1 2732 2923 -3223 205 164 18 18 chr13 42549172 42549227 -77195671 + GA-rich Low_complexity Low_complexity 3 57 0 513 314 81 50 chr13 42549348 42549730 -77195168 + L1M4 LINE L1 3385 3778 -2368 461 261 35 4 chr13 42549879 42550109 -77194789 + L1M4 LINE L1 3816 4052 -2094 34983 31 3 28 chr13 42550517 42555968 -77188930 - L1PA4 LINE L1 -8 6147 835 646 110 0 0 chr13 42555966 42556066 -77188832 - L1PA4 LINE L1 -6043 103 4 * 5470 172 14 9 chr13 42556110 42558139 -77186759 + L1PA16 LINE L1 4125 6157 -9 1098 59 0 0 chr13 42558160 42558296 -77186602 + AluY SINE Alu 172 307 -4 414 0 0 0 chr13 42558889 42558935 -77185963 + (CA)n Simple_repeat Simple_repeat 2 47 0 2009 161 34 27 chr13 42560111 42560954 -77183944 + MER45B DNA AcHobo 1 940 -641 2759 26 0 0 chr13 42560954 42561264 -77183634 - AluYa5 SINE Alu -1 310 1 2009 161 34 27 chr13 42561264 42561363 -77183535 + MER45B DNA AcHobo 940 1037 -3 226 374 35 17 chr13 42561365 42561480 -77183418 + L2 LINE L2 3188 3304 -9 337 315 47 16 chr13 42561512 42561639 -77183259 + L3 LINE CR1 1006 1136 -441 266 339 36 18 chr13 42561641 42561753 -77183145 + MIR SINE MIR 48 161 -101 200 316 151 19 chr13 42561891 42562097 -77182801 + L3 LINE CR1 1219 1451 -126 328 271 77 71 chr13 42562188 42562358 -77182540 - MIR SINE MIR -14 248 78 222 37 0 0 chr13 42563359 42563386 -77181512 + (CA)n Simple_repeat Simple_repeat 2 28 0 1928 149 0 7 chr13 42565271 42565566 -77179332 + AluJb SINE Alu 2 294 -18 2098 107 4 4 chr13 42566111 42566392 -77178506 + AluSx SINE Alu 28 308 -4 189 265 258 13 chr13 42566417 42566568 -77178330 - MER5A DNA MER1_type -1 188 1 523 266 89 128 chr13 42566631 42566876 -77178022 + L2 LINE L2 2536 2789 -524 678 85 0 0 chr13 42566876 42566970 -77177928 + L1MB5 LINE L1 6075 6168 -6 523 266 89 128 chr13 42566970 42567476 -77177422 + L2 LINE L2 2789 3275 -38 2175 124 7 0 chr13 42568459 42568765 -77176133 - AluSq SINE Alu -5 308 1 1540 187 34 24 chr13 42568765 42569059 -77175839 - AluJo SINE Alu -15 297 1 512 220 63 13 chr13 42570146 42570305 -77174593 - LTR33A LTR ERVL -13 510 344 901 139 63 67 chr13 42571002 42571158 -77173740 + L1MD2 LINE L1 6137 6293 -66 2005 92 4 26 chr13 42571158 42571431 -77173467 - AluSx SINE Alu -10 302 36 901 139 63 67 chr13 42571431 42571497 -77173401 + L1MD2 LINE L1 6293 6358 -1 180 0 0 0 chr13 42572446 42572466 -77172432 + (CAGGG)n Simple_repeat Simple_repeat 3 22 0 246 328 82 8 chr13 42572586 42572720 -77172178 + L2 LINE L2 2560 2703 -611 189 0 0 0 chr13 42572801 42572822 -77172076 + (A)n Simple_repeat Simple_repeat 1 21 0 457 224 105 28 chr13 42572848 42572991 -77171907 - LTR16C LTR ERVL -21 470 317 281 285 41 49 chr13 42573180 42573303 -77171595 + MER5B DNA MER1_type 57 178 0 240 319 18 62 chr13 42573455 42573492 -77171406 + L2 LINE L2 3163 3200 -72 2519 61 0 16 chr13 42573492 42573802 -77171096 + AluY SINE Alu 1 305 -6 240 319 18 62 chr13 42573802 42573877 -77171021 + L2 LINE L2 3200 3270 -2 198 205 0 0 chr13 42573995 42574034 -77170864 - L2 LINE L2 -12 3301 3263 256 246 0 43 chr13 42574892 42574961 -77169937 - L2 LINE L2 0 3272 3207 2014 106 10 3 chr13 42575137 42575429 -77169469 - AluSp SINE Alu -19 294 1 189 295 77 13 chr13 42577105 42577183 -77167715 + MIR3 SINE MIR 77 159 -49 2291 123 0 7 chr13 42580219 42580529 -77164369 - AluSx SINE Alu -4 308 1 324 0 0 0 chr13 42580731 42580767 -77164131 + (TG)n Simple_repeat Simple_repeat 1 36 0 1978 123 0 0 chr13 42580772 42581040 -77163858 - AluSx SINE Alu -30 282 15 222 283 0 0 chr13 42582089 42582142 -77162756 + CT-rich Low_complexity Low_complexity 3 55 0 369 214 69 23 chr13 42582636 42582767 -77162131 + MER103 DNA DNA 21 157 -9 432 311 8 8 chr13 42583042 42583161 -77161737 - MIR3 SINE MIR -36 172 54 356 85 0 0 chr13 42583866 42583913 -77160985 - U6 snRNA snRNA -60 47 1 201 263 18 0 chr13 42584120 42584177 -77160721 + L2 LINE L2 2182 2239 -1075 386 323 117 40 chr13 42584451 42585103 -77159795 + L2 LINE L2 2544 3271 -1 22 0 0 0 chr13 42587202 42587224 -77157674 + AT_rich Low_complexity Low_complexity 1 22 0 800 194 18 0 chr13 42588789 42588959 -77155939 + MLT1B LTR MaLR 1 173 -217 526 158 0 83 chr13 42588961 42589081 -77155817 + FRAM SINE Alu 66 175 -1 666 243 115 12 chr13 42589084 42589275 -77155623 + MLT1B LTR MaLR 200 423 -44 377 20 0 20 chr13 42589275 42589326 -77155572 + (TTG)n Simple_repeat Simple_repeat 1 50 0 666 243 115 12 chr13 42589326 42589377 -77155521 + MLT1B LTR MaLR 423 467 0 815 188 18 0 chr13 42590275 42590445 -77154453 + MLT1B LTR MaLR 1 173 -217 526 158 0 83 chr13 42590447 42590567 -77154331 + FRAM SINE Alu 66 175 -1 671 234 138 17 chr13 42590570 42590760 -77154138 + MLT1B LTR MaLR 200 426 -41 437 0 0 19 chr13 42590760 42590814 -77154084 + (TTG)n Simple_repeat Simple_repeat 2 54 0 671 234 138 17 chr13 42590814 42590862 -77154036 + MLT1B LTR MaLR 426 467 0 181 262 95 36 chr13 42591421 42591505 -77153393 - MIR3 SINE MIR -5 203 115 2191 112 0 3 chr13 42592007 42592301 -77152597 + AluSx SINE Alu 1 293 -19 376 221 115 29 chr13 42595701 42595805 -77149093 - L2 LINE L2 -2 3311 3199 1870 141 0 7 chr13 42595840 42596123 -77148775 + AluJb SINE Alu 5 285 -27 47 19 0 0 chr13 42596123 42596177 -77148721 + AT_rich Low_complexity Low_complexity 1 54 0 1406 109 12 51 chr13 42596332 42596588 -77148310 + Tigger2a DNA MER2_type 1 246 -188 519 209 0 0 chr13 42596585 42596676 -77148222 + Tigger2a DNA MER2_type 354 444 0 * 734 276 132 0 chr13 42596681 42596924 -77147974 - L2 LINE L2 -338 2976 2702 483 202 57 8 chr13 42596924 42597048 -77147850 - L1MB8 LINE L1 0 6178 6049 1838 225 56 56 chr13 42597051 42597285 -77147613 - L1PA13 LINE L1 -2 6161 5928 2803 174 65 12 chr13 42597285 42597654 -77147244 - L1MB8 LINE L1 -250 5934 5586 2391 91 0 0 chr13 42597654 42597950 -77146948 - AluSg SINE Alu -11 299 4 2803 174 65 12 chr13 42597950 42598605 -77146293 - L1MB8 LINE L1 -598 5586 4858 1056 253 41 15 chr13 42598605 42598708 -77146190 - L2 LINE L2 -599 2715 2616 2240 156 55 103 chr13 42598708 42599254 -77145644 - MLT2B1 LTR ERVL 0 520 1 1056 253 41 15 chr13 42599254 42599419 -77145479 - L2 LINE L2 -698 2616 2440 1956 174 67 5 chr13 42600316 42600689 -77144209 - MSTD LTR MaLR 0 396 1 345 229 259 0 chr13 42601864 42601995 -77142903 + L1ME4a LINE L1 5831 5995 -126 431 274 18 58 chr13 42602117 42602233 -77142665 + L1MC4 LINE L1 5694 5798 -2010 2342 127 42 3 chr13 42602233 42602594 -77142304 + THE1C LTR MaLR 1 375 0 431 274 18 58 chr13 42602594 42602703 -77142195 + L1MC4 LINE L1 5798 5910 -1898 21 0 0 0 chr13 42602816 42602837 -77142061 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 42602913 42602934 -77141964 + AT_rich Low_complexity Low_complexity 1 21 0 291 137 20 0 chr13 42603783 42603838 -77141060 + L2 LINE L2 3217 3313 0 1885 216 45 2 chr13 42604391 42604863 -77140035 + Charlie4a DNA MER1_type 17 508 0 485 288 56 68 chr13 42605080 42605330 -77139568 + MIR SINE MIR 1 247 -15 952 260 41 4 chr13 42605436 42605682 -77139216 + MIR SINE MIR 8 262 0 275 366 101 26 chr13 42607479 42607747 -77137151 + L2 LINE L2 2684 2971 -343 3494 229 34 19 chr13 42607939 42609427 -77135471 - L1ME1 LINE L1 -5 6161 4644 2368 106 0 0 chr13 42609427 42609730 -77135168 - AluSx SINE Alu -9 303 1 3494 229 34 19 chr13 42609730 42610095 -77134803 - L1ME1 LINE L1 -1522 4644 4286 186 133 0 0 chr13 42610567 42610597 -77134301 + (TA)n Simple_repeat Simple_repeat 1 30 0 329 242 0 44 chr13 42610598 42610689 -77134209 + L1MC4 LINE L1 6614 6700 -1342 * 336 261 0 22 chr13 42610628 42610720 -77134178 - L1MC4 LINE L1 -1339 6703 6614 302 307 11 0 chr13 42610697 42610785 -77134113 + L1MC4 LINE L1 6615 6703 -1339 * 307 258 0 0 chr13 42610821 42610910 -77133988 + L1MC4 LINE L1 6616 6704 -1338 27 0 0 0 chr13 42610910 42610937 -77133961 + AT_rich Low_complexity Low_complexity 1 27 0 1459 124 0 0 chr13 42610937 42611131 -77133767 - AluSg/x SINE Alu -46 264 71 1586 163 50 0 chr13 42611161 42611419 -77133479 - AluJo SINE Alu -18 294 24 332 286 57 21 chr13 42612124 42612264 -77132634 - L1ME4a LINE L1 -12 6109 5965 1664 166 3 21 chr13 42612716 42613005 -77131893 + AluJb SINE Alu 1 284 -28 535 149 0 18 chr13 42613005 42613119 -77131779 + (GGGGA)n Simple_repeat Simple_repeat 1 112 0 203 265 181 12 chr13 42613169 42613252 -77131646 + L2 LINE L2 3125 3221 -51 433 127 42 127 chr13 42613446 42613564 -77131334 + FLAM_A SINE Alu 35 142 0 1211 231 75 14 chr13 42613739 42614099 -77130799 + MLT1H LTR MaLR 1 382 -167 2853 171 97 62 chr13 42614153 42614523 -77130375 + L1MD1 LINE L1 5410 5766 -476 2229 118 3 3 chr13 42614523 42614829 -77130069 + AluSx SINE Alu 1 306 -6 2853 171 97 62 chr13 42614829 42615261 -77129637 + L1MD1 LINE L1 5766 6240 -2 381 269 156 18 chr13 42615261 42615428 -77129470 + MIR SINE MIR 73 262 0 2121 115 7 7 chr13 42615664 42615969 -77128929 - AluSx SINE Alu -7 305 1 218 336 133 28 chr13 42616019 42616162 -77128736 - L3 LINE CR1 -3 1574 1417 499 274 0 9 chr13 42616419 42616525 -77128373 - L2 LINE L2 0 3272 3168 263 237 79 13 chr13 42617595 42617671 -77127227 - MIR SINE MIR -98 164 84 184 345 142 26 chr13 42619621 42619734 -77125164 - MIR3 SINE MIR -25 183 58 1311 191 9 10 chr13 42619740 42620063 -77124835 - MLT1A1 LTR MaLR -10 355 1 221 289 67 115 chr13 42621221 42621429 -77123469 - L3b LINE CR1 -93 1490 1293 202 323 75 21 chr13 42622504 42622597 -77122301 + MIR SINE MIR 19 116 -92 208 344 89 89 chr13 42622698 42622968 -77121930 + L2 LINE L2 3003 3272 0 1605 185 25 4 chr13 42625596 42625715 -77119183 + AluJo SINE Alu 1 116 -196 201 39 0 0 chr13 42625715 42625741 -77119157 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 1605 185 25 4 chr13 42625741 42625897 -77119001 + AluJo SINE Alu 116 282 -30 213 253 80 27 chr13 42626342 42626417 -77118481 + MIR SINE MIR 52 130 -132 299 294 63 21 chr13 42627241 42627384 -77117514 + L1ME4a LINE L1 5607 5755 -2053 399 237 160 65 chr13 42627800 42627963 -77116935 + L1ME4a LINE L1 5788 5987 -134 333 0 0 0 chr13 42627963 42628000 -77116898 + (CA)n Simple_repeat Simple_repeat 2 38 0 399 237 160 65 chr13 42628000 42628098 -77116800 + L1ME4a LINE L1 5987 6074 -47 2064 59 3 69 chr13 42629045 42629335 -77115563 - AluY SINE Alu -16 295 25 7447 85 9 1 chr13 42629564 42630693 -77114205 - L1P LINE L1 -2758 3388 2251 337 279 50 37 chr13 42630805 42630966 -77113932 - L1MC4a LINE L1 -1945 5863 5701 201 383 0 82 chr13 42631562 42631745 -77113153 + L2 LINE L2 296 463 -2851 218 401 14 24 chr13 42631817 42632024 -77112874 + L2 LINE L2 542 746 -2568 1435 188 47 0 chr13 42632287 42632721 -77112177 + L1MC/D LINE L1 5132 5588 -743 280 245 52 12 chr13 42632907 42633104 -77111794 + L1ME LINE L1 784 994 -5076 830 192 145 30 chr13 42633168 42633402 -77111496 + MSTA LTR MaLR 1 261 -167 22 0 0 0 chr13 42633708 42633730 -77111168 + GC_rich Low_complexity Low_complexity 1 22 0 245 279 0 0 chr13 42633950 42634011 -77110887 + (CG)n Simple_repeat Simple_repeat 2 62 0 317 287 99 61 chr13 42634248 42634429 -77110469 + L1M2 LINE L1 768 955 -5894 279 266 85 32 chr13 42635019 42635113 -77109785 + L2 LINE L2 3172 3270 -2 1619 114 24 108 chr13 42635471 42635805 -77109093 - AluYb8 SINE Alu -12 306 1 2153 204 91 12 chr13 42636413 42636982 -77107916 + LTR48B LTR ERV1 1 614 -30 432 0 0 0 chr13 42637595 42637643 -77107255 + (A)n Simple_repeat Simple_repeat 1 48 0 191 345 9 43 chr13 42638475 42638591 -77106307 - L2 LINE L2 -12 3301 3190 403 297 60 22 chr13 42639389 42639574 -77105324 + MIR SINE MIR 7 198 -64 2096 130 3 3 chr13 42640155 42640456 -77104442 + AluSq SINE Alu 1 301 -12 2310 86 7 7 chr13 42640567 42640869 -77104029 + AluSx SINE Alu 1 302 -10 2827 10 0 0 chr13 42641012 42641322 -77103576 - AluYb8 SINE Alu -8 310 1 378 235 168 13 chr13 42642939 42643088 -77101810 + MIR SINE MIR 40 211 -51 2274 92 0 0 chr13 42643608 42643933 -77100965 - AluSx SINE Alu 0 325 1 380 292 50 8 chr13 42644166 42644286 -77100612 + L3b LINE CR1 1335 1459 -124 204 40 0 0 chr13 42644623 42644648 -77100250 + (GA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 42645616 42645637 -77099261 + AT_rich Low_complexity Low_complexity 1 21 0 239 235 0 44 chr13 42645828 42645896 -77099002 + CT-rich Low_complexity Low_complexity 2 66 0 201 229 25 147 chr13 42646227 42646384 -77098514 - MIR SINE MIR -33 229 92 3432 132 105 8 chr13 42646433 42647060 -77097838 - L1MA4A LINE L1 -7 6296 5609 249 348 22 0 chr13 42647128 42647220 -77097678 + L2 LINE L2 3171 3264 -8 198 0 0 0 chr13 42647222 42647244 -77097654 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1681 159 4 0 chr13 42648631 42648883 -77096015 + AluSx SINE Alu 38 290 -22 21 36 0 0 chr13 42648883 42648911 -77095987 + AT_rich Low_complexity Low_complexity 1 28 0 456 287 7 22 chr13 42649321 42649457 -77095441 - MIR SINE MIR -109 153 20 1381 173 103 11 chr13 42650654 42650925 -77093973 + AluJb SINE Alu 5 300 -12 504 291 107 22 chr13 42650939 42651168 -77093730 - MIR SINE MIR -12 250 2 336 328 0 8 chr13 42652330 42652449 -77092449 + MER5A DNA MER1_type 16 133 -56 1205 79 0 6 chr13 42652463 42652628 -77092270 - L1PA8 LINE L1 -1 6171 6008 341 70 123 0 chr13 42652731 42652788 -77092110 - L1PA8 LINE L1 -169 6003 5940 239 288 14 0 chr13 42652957 42653030 -77091868 - MER5B DNA MER1_type -19 159 86 2860 3 0 3 chr13 42653272 42653607 -77091291 - AluYa5 SINE Alu 0 334 1 2065 112 0 34 chr13 42653785 42654106 -77090792 - AluSx SINE Alu 0 311 1 279 260 170 20 chr13 42654683 42654783 -77090115 + L2 LINE L2 3146 3260 -12 360 319 85 21 chr13 42655190 42655331 -77089567 - MER5B DNA MER1_type -23 155 6 2687 33 0 0 chr13 42657021 42657327 -77087571 - AluY SINE Alu -5 306 1 2102 116 0 0 chr13 42657646 42657954 -77086944 - AluSx SINE Alu 0 308 1 21 0 0 0 chr13 42659607 42659628 -77085270 + AT_rich Low_complexity Low_complexity 1 21 0 245 297 16 0 chr13 42659643 42659707 -77085191 + L2 LINE L2 3133 3197 -75 21 0 0 0 chr13 42660153 42660174 -77084724 + AT_rich Low_complexity Low_complexity 1 21 0 206 214 24 0 chr13 42660961 42661003 -77083895 + L2 LINE L2 3255 3297 -16 242 217 14 0 chr13 42661226 42661295 -77083603 + GA-rich Low_complexity Low_complexity 3 72 0 2115 121 0 0 chr13 42662878 42663192 -77081706 + AluSx SINE Alu 1 314 0 21 0 0 0 chr13 42663203 42663224 -77081674 + AT_rich Low_complexity Low_complexity 1 21 0 371 288 79 58 chr13 42663314 42663453 -77081445 + MIR SINE MIR 20 161 -101 * 633 300 70 0 chr13 42663442 42663642 -77081256 - MIR SINE MIR 0 262 49 308 283 43 11 chr13 42663985 42664172 -77080726 + L1MC4a LINE L1 5039 5231 -915 1412 236 27 50 chr13 42664199 42664431 -77080467 + L1 LINE L1 4776 4995 -1151 2259 110 0 0 chr13 42664431 42664722 -77080176 + AluSx SINE Alu 1 291 -21 1412 236 27 50 chr13 42664722 42664930 -77079968 + L1 LINE L1 4995 5206 -940 3833 40 0 0 chr13 42664930 42665409 -77079489 - L1P LINE L1 -4424 1722 1244 416 73 0 0 chr13 42665414 42665469 -77079429 - L1P LINE L1 -5983 163 109 5404 39 5 1 chr13 42665469 42666129 -77078769 + L1PA4 LINE L1 5491 6152 -3 1564 273 57 29 chr13 42666136 42666822 -77078076 + L1MC4a LINE L1 5348 6052 -1756 1329 266 17 62 chr13 42667268 42667859 -77077039 + L1MC5 LINE L1 6575 7142 -819 215 179 71 18 chr13 42667859 42667915 -77076983 + MIR SINE MIR 121 179 -83 15164 155 45 19 chr13 42668164 42668319 -77076579 - L1M1 LINE L1 -4833 2732 2583 2068 146 0 0 chr13 42668319 42668614 -77076284 - AluSq SINE Alu -18 295 1 15164 155 45 19 chr13 42668614 42671107 -77073791 - L1M1 LINE L1 -4982 2583 15 540 336 37 8 chr13 42671204 42671448 -77073450 + L3 LINE CR1 931 1181 -396 4885 136 28 4 chr13 42671456 42672510 -77072388 + L1PA16 LINE L1 4950 6028 -138 1057 157 60 23 chr13 42672512 42672578 -77072320 + L1PA16 LINE L1 5929 5991 -175 2271 119 0 0 chr13 42672578 42672880 -77072018 + AluSx SINE Alu 1 302 -10 1057 157 60 23 chr13 42672880 42673029 -77071869 + L1PA16 LINE L1 5991 6152 -14 1152 192 12 41 chr13 42674631 42674876 -77070022 - MER8 DNA MER2_type 0 239 2 254 296 59 53 chr13 42674930 42675082 -77069816 - L2 LINE L2 -228 3044 2892 293 271 47 12 chr13 42675349 42675434 -77069464 - L2 LINE L2 0 3272 3185 342 0 0 0 chr13 42675646 42675684 -77069214 + (CA)n Simple_repeat Simple_repeat 2 39 0 2283 114 0 0 chr13 42676384 42676690 -77068208 - AluSx SINE Alu -6 306 1 2260 100 0 0 chr13 42676970 42677260 -77067638 - AluSx SINE Alu -22 290 1 515 267 53 13 chr13 42677453 42677603 -77067295 - LTR16A1 LTR ERVL -3 454 299 24 32 0 0 chr13 42679347 42679378 -77065520 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 42679752 42679783 -77065115 + AT_rich Low_complexity Low_complexity 1 31 0 575 287 63 36 chr13 42679826 42680049 -77064849 + MIR SINE MIR 34 262 0 7452 29 8 0 chr13 42681188 42682547 -77062351 + L1PA4 LINE L1 4786 6151 -4 2818 13 0 0 chr13 42683646 42683955 -77060943 + AluYb8 SINE Alu 1 309 -9 614 276 66 17 chr13 42684662 42684843 -77060055 - MIR SINE MIR -14 248 59 775 236 158 42 chr13 42684904 42685264 -77059634 + MER57B LTR ERV1 10 411 -23 228 103 0 0 chr13 42685296 42685335 -77059563 + MER57A LTR ERV1 365 403 0 561 139 20 0 chr13 42685557 42685658 -77059240 - L1MB7 LINE L1 0 6184 6082 617 243 94 58 chr13 42685670 42686007 -77058891 - LTR35 LTR ERV1 -1 676 350 265 276 22 104 chr13 42686121 42686255 -77058643 - LTR35 LTR ERV1 -495 123 1 3226 163 34 42 chr13 42686260 42686872 -77058026 - L1MB8 LINE L1 -103 6075 5467 2907 107 16 5 chr13 42686872 42687301 -77057597 - MER57B LTR ERV1 0 434 1 3226 163 34 42 chr13 42687301 42687338 -77057560 - L1MB8 LINE L1 -711 5467 5431 274 100 0 0 chr13 42687414 42687454 -77057444 - L1ME LINE L1 -362 6044 6005 5445 37 1 8 chr13 42687457 42688125 -77056773 - L1PA4 LINE L1 -1 6154 5491 408 74 0 0 chr13 42688125 42688179 -77056719 + L1P LINE L1 109 162 -5984 8601 232 59 46 chr13 42688180 42688813 -77056085 - L1MEc LINE L1 -382 6018 5395 1703 166 15 0 chr13 42688813 42689084 -77055814 - AluJo SINE Alu -37 275 1 8601 232 59 46 chr13 42689084 42692322 -77052576 - L1MEc LINE L1 -1005 5395 2138 319 211 25 121 chr13 42692434 42692506 -77052392 - L1MEc LINE L1 -4586 1923 1846 1732 171 7 4 chr13 42692506 42692813 -77052085 + AluSx SINE Alu 1 308 0 319 211 25 121 chr13 42692813 42692877 -77052021 - L1MEc LINE L1 -4663 1846 1673 1851 85 4 0 chr13 42693145 42693381 -77051517 - AluSq SINE Alu -7 306 70 2348 95 3 0 chr13 42693662 42693967 -77050931 - AluSq SINE Alu -7 306 1 225 178 44 0 chr13 42694026 42694071 -77050827 - L1MEc LINE L1 -5475 897 851 433 330 153 11 chr13 42694568 42694850 -77050048 + L1MC4a LINE L1 5612 5933 -237 276 292 12 47 chr13 42695056 42695150 -77049748 + MIR SINE MIR 34 125 -83 1938 171 0 0 chr13 42695367 42695666 -77049232 - AluJb SINE Alu -11 301 3 4020 222 67 74 chr13 42696946 42698879 -77046019 + L1MDa LINE L1 23 2097 -4443 328 258 42 8 chr13 42698898 42699018 -77045880 + L1MB8 LINE L1 6015 6138 -40 * 17104 182 17 11 chr13 42699016 42702956 -77041942 + L1PA13 LINE L1 1079 5065 -1732 279 0 0 0 chr13 42702956 42702987 -77041911 + (CA)n Simple_repeat Simple_repeat 1 31 0 17104 182 17 11 chr13 42702987 42703185 -77041713 + L1PA13 LINE L1 5065 5260 -1537 4722 84 58 36 chr13 42703184 42703937 -77040961 + L1PA13 LINE L1 6037 6806 -8 * 2526 75 0 0 chr13 42703941 42704248 -77040650 + AluY SINE Alu 1 307 -4 292 125 0 0 chr13 42704301 42704349 -77040549 + L1MB8 LINE L1 6125 6172 -6 488 259 89 35 chr13 42704350 42704555 -77040343 + L1ME3 LINE L1 5961 6334 0 341 310 143 16 chr13 42704569 42704814 -77040084 - L1ME LINE L1 -587 5579 5304 294 95 0 0 chr13 42705042 42705084 -77039814 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 43 0 21 chr13 42705188 42705213 -77039685 + AT_rich Low_complexity Low_complexity 1 26 -20 2294 104 0 0 chr13 42705213 42705511 -77039387 + AluSx SINE Alu 1 298 -14 22 43 0 21 chr13 42705511 42705532 -77039366 + AT_rich Low_complexity Low_complexity 26 46 0 22 35 0 0 chr13 42707934 42707963 -77036935 + AT_rich Low_complexity Low_complexity 1 29 0 220 344 15 53 chr13 42708007 42708138 -77036760 + MIR SINE MIR 20 145 -63 307 375 148 8 chr13 42708149 42708405 -77036493 + L2 LINE L2 1947 2238 -1076 379 264 95 125 chr13 42708639 42709007 -77035891 - MLT1H LTR MaLR -170 379 23 1183 332 109 20 chr13 42709328 42710286 -77034612 + L2 LINE L2 2286 3313 0 309 275 12 0 chr13 42710513 42710593 -77034305 + CT-rich Low_complexity Low_complexity 3 83 0 1020 232 102 34 chr13 42710599 42711268 -77033630 - L1MB7 LINE L1 0 6184 5454 306 50 0 0 chr13 42711268 42711308 -77033590 + (TG)n Simple_repeat Simple_repeat 1 40 0 1477 208 110 25 chr13 42711414 42711852 -77033046 - L1ME LINE L1 -948 5198 4724 2190 209 88 81 chr13 42711853 42711920 -77032978 + MER21B LTR ERV1 1 66 -797 2435 145 33 9 chr13 42711920 42712340 -77032558 - MSTB1 LTR MaLR 0 432 3 2190 209 88 81 chr13 42712340 42712964 -77031934 + MER21B LTR ERV1 66 697 -166 1550 106 65 12 chr13 42712964 42713210 -77031688 - Tigger7 DNA MER2_type 0 2487 2229 1064 97 28 0 chr13 42713210 42713355 -77031543 - AluSq/x SINE Alu -164 149 1 3123 184 12 0 chr13 42713357 42713868 -77031030 - Tigger7 DNA MER2_type -216 517 1 242 310 35 11 chr13 42713868 42713955 -77030943 + MER21B LTR ERV1 696 784 -79 3082 246 22 1 chr13 42713955 42714761 -77030137 - L1ME LINE L1 -1419 4727 3905 21 0 0 0 chr13 42714771 42714792 -77030106 + AT_rich Low_complexity Low_complexity 1 21 0 220 262 254 32 chr13 42715151 42715277 -77029621 + L2 LINE L2 3138 3291 -22 494 322 121 0 chr13 42715561 42715735 -77029163 - MIR SINE MIR -65 197 3 21 0 0 0 chr13 42716420 42716441 -77028457 + AT_rich Low_complexity Low_complexity 1 21 0 483 305 155 13 chr13 42717152 42717378 -77027520 + MIR SINE MIR 5 262 0 251 341 0 0 chr13 42717394 42717479 -77027419 + MER117 DNA MER1_type 64 148 -49 190 208 42 0 chr13 42717863 42717911 -77026987 + L2 LINE L2 3004 3053 -219 711 266 100 22 chr13 42718202 42718431 -77026467 - MIR SINE MIR -15 247 1 1053 212 4 37 chr13 42718504 42718749 -77026149 + MER8 DNA MER2_type 2 238 -1 3658 284 202 25 chr13 42718995 42721068 -77023830 + L2 LINE L2 22 2461 -853 364 304 27 9 chr13 42721241 42721353 -77023545 + L2 LINE L2 2471 2584 -730 284 259 326 0 chr13 42721337 42721484 -77023414 + L2 LINE L2 3022 3216 -97 * 769 304 40 8 chr13 42721713 42721963 -77022935 + MIR SINE MIR 5 262 0 212 339 65 0 chr13 42721986 42722048 -77022850 + L2 LINE L2 3143 3208 -64 583 211 45 64 chr13 42722914 42723070 -77021828 + MLT1D LTR MaLR 1 153 -352 2063 188 183 2 chr13 42723071 42723540 -77021358 + MER89 LTR ERV1 6 559 0 520 238 131 60 chr13 42723546 42723828 -77021070 + MLT1D LTR MaLR 164 465 -2 2209 81 18 0 chr13 42724429 42724712 -77020186 + AluSx SINE Alu 9 296 -16 320 187 0 0 chr13 42724990 42725065 -77019833 - L1MB7 LINE L1 0 6184 6110 352 242 88 144 chr13 42725357 42725551 -77019347 - MER5B DNA MER1_type -6 183 1 473 84 127 0 chr13 42725808 42725879 -77019019 + MADE1 DNA Mariner 1 80 0 343 314 151 57 chr13 42726760 42727218 -77017680 + L1M2 LINE L1 765 1265 -5584 577 118 42 0 chr13 42727321 42727440 -77017458 + (CGAGG)n Simple_repeat Simple_repeat 4 127 0 213 167 0 0 chr13 42730157 42730193 -77014705 + (TA)n Simple_repeat Simple_repeat 2 38 0 3408 165 27 2 chr13 42730193 42730782 -77014116 - MER6A DNA MER2_type -1 604 1 380 258 88 61 chr13 42731789 42731913 -77012985 - MER20B DNA MER1_type 0 219 67 180 77 0 0 chr13 42731913 42731939 -77012959 + (CCAA)n Simple_repeat Simple_repeat 3 28 0 380 258 88 61 chr13 42731939 42732004 -77012894 - MER20B DNA MER1_type -152 67 5 5583 131 19 6 chr13 42732604 42734363 -77010535 + L1PA15 LINE L1 4400 6165 0 22 35 0 0 chr13 42734363 42734392 -77010506 + AT_rich Low_complexity Low_complexity 1 29 0 236 323 106 43 chr13 42734592 42734827 -77010071 + L2 LINE L2 2250 2499 -815 453 150 0 0 chr13 42735231 42735311 -77009587 + L1MB2 LINE L1 4456 4535 -1611 3942 161 24 20 chr13 42735311 42736061 -77008837 + L1MB2 LINE L1 5411 6163 -8 282 237 26 13 chr13 42737879 42737955 -77006943 + CT-rich Low_complexity Low_complexity 2 78 0 681 242 26 84 chr13 42738394 42738571 -77006327 - MER58A DNA MER1_type -2206 214 51 618 188 31 8 chr13 42738571 42738699 -77006199 + FLAM_A SINE Alu 1 131 -2 681 242 26 84 chr13 42738699 42738748 -77006150 - MER58A DNA MER1_type -2369 51 1 447 364 145 27 chr13 42739314 42740330 -77004568 - L2 LINE L2 0 3272 2143 318 342 92 11 chr13 42740790 42740974 -77003924 - MIR SINE MIR -31 231 33 1363 138 21 0 chr13 42741747 42741986 -77002912 - L1MA5A LINE L1 0 6297 6054 2252 49 3 11 chr13 42744117 42744440 -77000458 - AluY SINE Alu 0 321 1 624 324 180 9 chr13 42744544 42745093 -76999805 + L2 LINE L2 2272 2914 -400 415 182 0 20 chr13 42745310 42745409 -76999489 + (TA)n Simple_repeat Simple_repeat 2 98 0 247 330 70 10 chr13 42745898 42745998 -76998900 + L2 LINE L2 3159 3264 -49 1764 108 148 75 chr13 42746055 42746096 -76998802 - MSTA LTR MaLR 0 428 391 2322 90 0 3 chr13 42746096 42746395 -76998503 + AluSc SINE Alu 1 298 -11 1764 108 148 75 chr13 42746395 42746752 -76998146 - MSTA LTR MaLR -37 391 1 4723 114 38 23 chr13 42747033 42747829 -76997069 + L1MA5 LINE L1 5491 6298 -2 748 232 48 0 chr13 42748177 42748345 -76996553 + MER5B DNA MER1_type 2 177 -1 26 0 0 0 chr13 42748383 42748409 -76996489 + AT_rich Low_complexity Low_complexity 1 26 0 2000 130 7 0 chr13 42748417 42748709 -76996189 + AluSx SINE Alu 1 294 -18 2148 102 14 0 chr13 42749494 42749787 -76995111 + AluSx SINE Alu 1 297 -15 193 29 29 29 chr13 42749857 42749892 -76995006 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 45 0 0 0 chr13 42750018 42750063 -76994835 + AT_rich Low_complexity Low_complexity 1 45 0 2045 98 0 3 chr13 42750063 42750348 -76994550 - AluY SINE Alu -27 284 1 791 291 100 28 chr13 42750533 42751135 -76993763 + L1MC5 LINE L1 7260 7904 -57 21 0 0 0 chr13 42751147 42751168 -76993730 + AT_rich Low_complexity Low_complexity 1 21 0 1187 251 75 12 chr13 42751536 42752278 -76992620 - L1M4 LINE L1 -2887 3259 2448 980 236 8 37 chr13 42753205 42753446 -76991452 - MER8 DNA MER2_type -4 235 2 261 366 144 16 chr13 42755544 42755801 -76989097 - L2 LINE L2 -1078 2236 1947 218 322 7 59 chr13 42755775 42755943 -76988955 - MIR SINE MIR -63 145 20 * 22 35 0 0 chr13 42755988 42756017 -76988881 + AT_rich Low_complexity Low_complexity 1 29 0 2251 114 0 0 chr13 42757386 42757685 -76987213 - AluSx SINE Alu -13 299 1 2003 126 0 0 chr13 42757965 42758250 -76986648 - AluSx SINE Alu -22 290 6 2729 165 34 38 chr13 42758350 42758907 -76985991 + L1MB8 LINE L1 5521 6075 -103 244 284 22 104 chr13 42758912 42759046 -76985852 + LTR35 LTR ERV1 1 123 -495 427 274 73 81 chr13 42759160 42759497 -76985401 + LTR35 LTR ERV1 350 617 -1 474 136 34 11 chr13 42759509 42759597 -76985301 + L1MB8 LINE L1 6080 6169 -9 2527 188 38 13 chr13 42759715 42760246 -76984652 + L1MC3 LINE L1 7221 7764 -21 823 311 55 60 chr13 42761205 42761842 -76983056 - HAL1 LINE L1 -1871 636 3 651 248 7 0 chr13 42762099 42762244 -76982654 + FRAM SINE Alu 1 145 -31 4361 250 8 10 chr13 42762380 42763550 -76981348 + L1P LINE L1 1264 2430 -3716 286 67 22 22 chr13 42765367 42765412 -76979486 - L1PA7 LINE L1 -617 5537 5493 4147 79 3 18 chr13 42765412 42766009 -76978889 + L1PA7 LINE L1 5567 6154 0 1840 126 0 27 chr13 42766304 42766597 -76978301 + AluY SINE Alu 16 300 -11 2516 64 0 0 chr13 42767016 42767327 -76977571 - AluY SINE Alu 0 311 1 1017 283 82 20 chr13 42767491 42768138 -76976760 + L1MC5 LINE L1 7260 7925 -36 1105 170 5 16 chr13 42768319 42768513 -76976385 + AluJo SINE Alu 87 278 -34 312 331 134 52 chr13 42768839 42769087 -76975811 + L3 LINE CR1 1095 1372 -205 1520 225 85 40 chr13 42769087 42769532 -76975366 + LTR40c LTR ERVL 1 465 0 312 331 134 52 chr13 42769532 42769573 -76975325 + L3 LINE CR1 1372 1408 -169 412 193 145 0 chr13 42769948 42770031 -76974867 - L1MC3 LINE L1 -477 7308 7214 4530 174 61 13 chr13 42771391 42772324 -76972574 - L1MC3 LINE L1 -21 7764 6787 31 44 0 0 chr13 42772946 42772991 -76971907 + AT_rich Low_complexity Low_complexity 1 45 0 381 335 101 33 chr13 42774158 42774614 -76970284 - L2 LINE L2 -457 2857 2371 231 36 0 0 chr13 42774614 42774642 -76970256 + (TGG)n Simple_repeat Simple_repeat 2 29 0 2095 41 8 19 chr13 42775361 42775628 -76969270 - AluY SINE Alu -8 303 40 219 238 36 36 chr13 42776622 42776706 -76968192 - MIR3 SINE MIR 0 208 125 855 196 63 74 chr13 42777455 42777726 -76967172 - L2 LINE L2 -4 3309 3042 * 1229 278 97 43 chr13 42777716 42778338 -76966560 - L2 LINE L2 -1050 2264 1610 370 319 9 9 chr13 42779058 42779171 -76965727 - MIR3 SINE MIR -35 173 61 23 0 0 0 chr13 42779174 42779197 -76965701 + AT_rich Low_complexity Low_complexity 1 23 0 394 267 19 0 chr13 42779201 42779306 -76965592 - MIR SINE MIR -3 259 153 749 181 87 0 chr13 42779488 42779626 -76965272 + MER5A DNA MER1_type 35 184 -5 2277 310 95 55 chr13 42779650 42780537 -76964361 + ERVL LTR ERVL 2256 3219 -2545 2211 62 66 3 chr13 42780537 42780825 -76964073 - AluY SINE Alu -5 306 1 2277 310 95 55 chr13 42780825 42781310 -76963588 + ERVL LTR ERVL 3219 3683 -2081 377 283 113 40 chr13 42781732 42782031 -76962867 - MLT1H LTR MaLR -200 349 1 332 341 98 0 chr13 42782127 42782250 -76962648 - L2 LINE L2 -8 3305 3171 339 294 128 0 chr13 42782281 42782390 -76962508 - MIR SINE MIR -87 175 53 196 303 45 84 chr13 42783074 42783229 -76961669 - MIR SINE MIR -77 185 37 648 266 36 39 chr13 42785584 42785803 -76959095 - MIR SINE MIR -46 216 2 1337 179 29 7 chr13 42785847 42786120 -76958778 + L1MB8 LINE L1 5891 6169 -9 228 359 54 74 chr13 42786135 42786486 -76958412 - L2 LINE L2 -101 3171 2828 1839 166 3 7 chr13 42786587 42786895 -76958003 - AluJo SINE Alu -5 307 1 2190 119 0 0 chr13 42787644 42787939 -76956959 - AluSx SINE Alu -17 295 1 35 71 0 0 chr13 42788318 42788388 -76956510 + AT_rich Low_complexity Low_complexity 1 70 0 257 350 0 16 chr13 42788552 42788675 -76956223 + CT-rich Low_complexity Low_complexity 5 125 0 204 40 0 0 chr13 42788929 42788954 -76955944 + (T)n Simple_repeat Simple_repeat 1 25 0 2336 162 29 10 chr13 42789237 42789651 -76955247 - MSTB LTR MaLR -4 422 1 2098 115 3 0 chr13 42790068 42790355 -76954543 + AluSp SINE Alu 1 288 -25 186 43 0 0 chr13 42790355 42790378 -76954520 + (TA)n Simple_repeat Simple_repeat 2 24 0 2249 114 3 0 chr13 42790831 42791138 -76953760 + AluSx SINE Alu 1 308 -4 2731 96 48 32 chr13 42791207 42791251 -76953647 - MLT2A1 LTR ERVL 0 444 402 2065 138 0 19 chr13 42791251 42791569 -76953329 + AluSx SINE Alu 1 312 0 2731 96 48 32 chr13 42791569 42791592 -76953306 - MLT2A1 LTR ERVL -42 402 381 315 0 0 0 chr13 42791592 42791627 -76953271 + (TA)n Simple_repeat Simple_repeat 2 36 0 2731 96 48 32 chr13 42791627 42791995 -76952903 - MLT2A1 LTR ERVL -63 381 1 2665 77 51 134 chr13 42792460 42792913 -76951985 + MLT2A2 LTR ERVL 1 411 -42 504 0 0 0 chr13 42792913 42792969 -76951929 + (TA)n Simple_repeat Simple_repeat 2 57 0 2665 77 51 134 chr13 42792969 42793007 -76951891 + MLT2A2 LTR ERVL 411 451 -2 380 181 0 14 chr13 42793333 42793405 -76951493 + L1MEd LINE L1 1181 1251 -4868 1147 228 63 77 chr13 42793541 42793576 -76951322 - L1M4 LINE L1 -2648 3498 3464 1459 148 9 4 chr13 42793576 42793805 -76951093 + AluJb SINE Alu 74 303 -9 1147 228 63 77 chr13 42793805 42794325 -76950573 - L1M4 LINE L1 -2682 3464 2951 1274 155 10 0 chr13 42794325 42794531 -76950367 + MER57A LTR ERV1 1 208 -195 837 154 66 6 chr13 42794538 42794720 -76950178 - L1M4 LINE L1 -3197 2949 2757 2448 179 18 53 chr13 42794721 42795196 -76949702 + MLT1C LTR MaLR 4 467 0 1975 237 25 23 chr13 42795196 42795243 -76949655 - L1M4 LINE L1 -3428 2718 2673 2258 143 79 13 chr13 42795243 42795635 -76949263 - MER47B DNA MER2_type 0 418 1 1975 237 25 23 chr13 42795635 42796190 -76948708 - L1M4 LINE L1 -3473 2673 2115 893 130 0 15 chr13 42796199 42796330 -76948568 + FLAM_C SINE Alu 2 130 -13 2093 145 10 3 chr13 42796455 42796765 -76948133 - AluSx SINE Alu 0 312 1 503 148 10 10 chr13 42796836 42796937 -76947961 - MER69 DNA AcHobo -416 2110 2010 * 1793 244 127 10 chr13 42796935 42797439 -76947459 - MER69 DNA AcHobo -1958 568 6 592 319 111 62 chr13 42797648 42798404 -76946494 + L2 LINE L2 2153 2945 -369 461 344 89 37 chr13 42798424 42798852 -76946046 + L2 LINE L2 2509 2958 -356 21 57 0 0 chr13 42798951 42798986 -76945912 + AT_rich Low_complexity Low_complexity 1 35 0 318 299 74 65 chr13 42799150 42799381 -76945517 + L3 LINE CR1 1333 1565 -12 273 29 0 0 chr13 42799523 42799557 -76945341 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 702 39 29 0 chr13 42801166 42801268 -76943630 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 201 39 0 0 chr13 42801270 42801296 -76943602 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 312 321 12 75 chr13 42801342 42801582 -76943316 + MARNA DNA Mariner 348 572 -14 208 246 0 0 chr13 42804575 42804632 -76940266 + (TA)n Simple_repeat Simple_repeat 2 58 0 1069 81 0 32 chr13 42805318 42805503 -76939395 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 201 74 0 0 chr13 42805510 42805537 -76939361 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 202 235 20 0 chr13 42805637 42805688 -76939210 + GA-rich Low_complexity Low_complexity 4 55 0 193 146 18 127 chr13 42805791 42805846 -76939052 - L2 LINE L2 0 3313 3265 1273 270 106 23 chr13 42805969 42806056 -76938842 + LTR16A LTR ERVL 22 100 -350 2493 195 122 4 chr13 42806056 42806477 -76938421 + MLT2B2 LTR ERVL 1 482 -33 288 53 0 0 chr13 42806477 42806515 -76938383 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 2493 195 122 4 chr13 42806515 42806554 -76938344 + MLT2B2 LTR ERVL 482 515 0 1273 270 106 23 chr13 42806554 42806862 -76938036 + LTR16A LTR ERVL 100 450 0 1853 328 53 27 chr13 42807004 42808040 -76936858 + HERVL LTR ERVL 4225 5287 -367 992 243 65 11 chr13 42808321 42808597 -76936301 + LTR16A LTR ERVL 160 450 0 576 323 194 27 chr13 42808597 42809254 -76935644 - L2 LINE L2 -181 3132 2364 232 258 65 0 chr13 42809466 42809528 -76935370 - MER5A DNA MER1_type -113 76 11 426 287 79 24 chr13 42809560 42809724 -76935174 + MIR SINE MIR 36 208 -54 339 340 54 15 chr13 42811579 42811782 -76933116 + MIR SINE MIR 49 259 -3 2006 125 0 17 chr13 42812077 42812366 -76932532 - AluSx SINE Alu -28 284 1 3832 154 36 39 chr13 42812582 42812703 -76932195 + L1MC2 LINE L1 5593 5713 -631 922 237 90 88 chr13 42812703 42813239 -76931659 + MER34 LTR ERV1 5 541 -1 3832 154 36 39 chr13 42813239 42813862 -76931036 + L1MC2 LINE L1 5713 6335 -9 224 260 0 0 chr13 42814048 42814098 -76930800 + T-rich Low_complexity Low_complexity 1 50 0 3125 240 47 13 chr13 42814483 42815501 -76929397 - L1ME3 LINE L1 0 6162 5107 412 288 192 0 chr13 42815566 42815806 -76929092 - L1ME3 LINE L1 -1227 4919 4634 4308 261 104 61 chr13 42815866 42816189 -76928709 - HAL1 LINE L1 -5 2502 2194 2330 112 3 0 chr13 42816189 42816501 -76928397 - AluSq SINE Alu 0 313 1 4308 261 104 61 chr13 42816501 42816782 -76928116 - HAL1 LINE L1 -313 2194 1927 1811 177 18 81 chr13 42816782 42817167 -76927731 - MLT1A1 LTR MaLR -4 361 1 4308 261 104 61 chr13 42817167 42818958 -76925940 - HAL1 LINE L1 -580 1927 3 955 184 0 0 chr13 42819215 42819367 -76925531 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr13 42819513 42819537 -76925361 + AT_rich Low_complexity Low_complexity 1 24 0 2201 86 0 24 chr13 42821035 42821326 -76923572 - AluY SINE Alu -12 299 16 547 181 16 50 chr13 42821606 42821621 -76923277 + L1P3 LINE L1 5477 5491 -671 4942 57 2 12 chr13 42821621 42822216 -76922682 - L1PA7 LINE L1 0 6154 5566 547 181 16 50 chr13 42822216 42822312 -76922586 + L1PA7 LINE L1 5491 5581 -581 2324 105 0 0 chr13 42822316 42822620 -76922278 + AluY SINE Alu 1 304 -7 283 267 188 0 chr13 42822763 42822864 -76922034 - L2 LINE L2 -12 3301 3182 1530 230 34 27 chr13 42823266 42823675 -76921223 - LTR52 LTR ERVL -9 412 1 225 0 0 0 chr13 42824034 42824059 -76920839 + (T)n Simple_repeat Simple_repeat 1 25 0 223 360 86 14 chr13 42824102 42824241 -76920657 - MER5A DNA MER1_type -6 183 35 355 262 121 13 chr13 42824499 42824648 -76920250 - MIR SINE MIR -50 212 48 1979 79 64 4 chr13 42824665 42824966 -76919932 - AluY SINE Alu 0 317 1 557 354 34 20 chr13 42825287 42825581 -76919317 - L2 LINE L2 -398 2916 2619 1966 215 8 11 chr13 42825646 42826009 -76918889 + MLT1A1 LTR MaLR 4 365 0 35 24 0 0 chr13 42826192 42826234 -76918664 + AT_rich Low_complexity Low_complexity 1 42 0 2115 78 0 84 chr13 42826356 42826676 -76918222 - AluSx SINE Alu -19 293 1 332 250 13 0 chr13 42826946 42827022 -76917876 - MLT1K LTR MaLR -2 586 510 1765 205 68 20 chr13 42827901 42827952 -76916946 - MLT2D LTR ERVL 0 414 367 216 0 0 0 chr13 42827952 42827976 -76916922 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 1765 205 68 20 chr13 42827976 42828319 -76916579 - MLT2D LTR ERVL -47 367 1 1574 174 55 4 chr13 42830102 42830377 -76914521 + AluJo SINE Alu 1 289 -23 533 219 75 147 chr13 42831142 42831516 -76913382 - L1MC4 LINE L1 -2 8040 7694 183 80 0 0 chr13 42831520 42831545 -76913353 + (T)n Simple_repeat Simple_repeat 1 25 0 8418 12 3 0 chr13 42831567 42833089 -76911809 - L1PA2 LINE L1 0 6155 4630 37455 36 29 2 chr13 42836474 42840983 -76903915 - L1PA2 LINE L1 -1514 4632 2 594 295 28 31 chr13 42840994 42841282 -76903616 - L1MC4 LINE L1 -364 7678 7392 1567 235 57 40 chr13 42841341 42841817 -76903081 + MLT1D LTR MaLR 22 505 0 527 230 11 11 chr13 42842390 42842568 -76902330 + CT-rich Low_complexity Low_complexity 3 180 0 233 205 0 0 chr13 42842568 42842607 -76902291 + polypyrimidine Low_complexity Low_complexity 2 40 0 231 167 0 0 chr13 42842724 42842766 -76902132 + CT-rich Low_complexity Low_complexity 1 42 0 317 147 0 29 chr13 42842776 42842844 -76902054 + (TCTCCC)n Simple_repeat Simple_repeat 3 68 0 1587 263 92 0 chr13 42843355 42843788 -76901110 - MER45C DNA AcHobo -480 473 1 235 255 0 0 chr13 42845062 42845113 -76899785 - MER63 DNA MER1_type 0 1062 1012 181 315 130 37 chr13 42845500 42845608 -76899290 - L2 LINE L2 -16 3256 3139 297 303 74 19 chr13 42845707 42845869 -76899029 + L1ME4a LINE L1 5945 6115 -6 1741 152 4 14 chr13 42845946 42846223 -76898675 - MER1B DNA MER1_type -65 274 1 329 314 94 54 chr13 42847444 42847721 -76897177 - L2 LINE L2 0 3313 3026 473 305 142 19 chr13 42849789 42850163 -76894735 - L1ME4a LINE L1 -202 5919 5500 251 238 0 32 chr13 42850213 42850276 -76894622 - MIR SINE MIR -114 148 88 277 242 33 44 chr13 42851978 42852069 -76892829 + MLT2E LTR ERVL 49 138 -490 655 241 38 72 chr13 42852440 42852681 -76892217 + L1ME3A LINE L1 5887 6118 -52 2363 108 3 0 chr13 42852681 42852987 -76891911 - AluSp SINE Alu -6 307 1 655 241 38 72 chr13 42852987 42853036 -76891862 + L1ME3A LINE L1 6118 6167 -3 242 254 4 4 chr13 42853102 42853179 -76891719 - MIR SINE MIR -45 163 86 2311 100 3 13 chr13 42853948 42854258 -76890640 - AluSx SINE Alu -5 307 1 281 355 45 0 chr13 42854362 42854472 -76890426 - L2 LINE L2 0 3272 3158 272 354 12 0 chr13 42855585 42855667 -76889231 + MIR SINE MIR 30 112 -96 185 362 8 31 chr13 42855659 42855786 -76889112 + MER5A DNA MER1_type 38 161 -28 * 6006 93 12 40 chr13 42857975 42859060 -76885838 + L1PA13 LINE L1 5105 6162 -1 4445 146 28 4 chr13 42860118 42860823 -76884075 - MER50 LTR ERV1 -12 722 1 230 325 50 15 chr13 42863355 42863488 -76881410 + MIR SINE MIR 1 144 -118 1729 113 50 108 chr13 42863488 42863844 -76881054 + THE1C LTR MaLR 1 333 -42 2114 143 0 0 chr13 42863844 42864137 -76880761 - AluSx SINE Alu -19 293 1 1729 113 50 108 chr13 42864137 42864178 -76880720 + THE1C LTR MaLR 333 375 0 577 208 130 0 chr13 42864392 42864546 -76880352 - MIR SINE MIR -30 232 59 1289 235 81 47 chr13 42864547 42864994 -76879904 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr13 42865254 42865275 -76879623 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 42865401 42865445 -76879453 + AT_rich Low_complexity Low_complexity 1 44 0 4288 77 266 3 chr13 42866295 42866949 -76877949 + LTR12 LTR ERV1 1 826 0 23 0 0 0 chr13 42867094 42867117 -76877781 + AT_rich Low_complexity Low_complexity 1 23 0 1126 205 117 56 chr13 42868568 42868910 -76875988 + MLT1A1 LTR MaLR 1 363 -2 223 276 48 38 chr13 42868947 42869052 -76875846 + L2 LINE L2 2394 2499 -815 2144 124 0 43 chr13 42869083 42869406 -76875492 - AluSx SINE Alu -3 309 1 266 257 43 107 chr13 42870675 42870858 -76874040 - MER5A DNA MER1_type 0 189 7 1226 300 72 9 chr13 42871527 42872040 -76872858 - MLT1G1 LTR MaLR -7 588 3 53 49 0 0 chr13 42875361 42875442 -76869456 + AT_rich Low_complexity Low_complexity 1 81 0 1596 203 15 30 chr13 42875544 42875943 -76868955 - MER69 DNA AcHobo 0 2526 2134 1597 259 100 34 chr13 42875944 42876532 -76868366 - MER69 DNA AcHobo -1899 627 1 195 353 60 26 chr13 42876655 42876921 -76867977 - L2 LINE L2 -1217 2097 1823 398 255 186 49 chr13 42877431 42877694 -76867204 - L1ME4a LINE L1 -261 5860 5562 2199 117 0 3 chr13 42878163 42878463 -76866435 - AluSq SINE Alu -13 300 2 197 373 36 0 chr13 42878582 42878692 -76866206 - L2 LINE L2 -245 3027 2914 320 260 41 18 chr13 42879194 42879344 -76865554 + MIR3 SINE MIR 30 181 -27 1720 134 76 44 chr13 42880121 42880422 -76864476 + AluJo SINE Alu 1 310 0 215 356 0 0 chr13 42880584 42880657 -76864241 - MIR SINE MIR -79 129 57 * 225 219 0 31 chr13 42880643 42880707 -76864191 + L2 LINE L2 3250 3311 -2 353 336 39 0 chr13 42881046 42881174 -76863724 + LTR67 LTR ERVL 110 242 -315 278 301 156 23 chr13 42881543 42881716 -76863182 + L2 LINE L2 3118 3313 0 188 255 121 64 chr13 42882451 42882592 -76862306 - L2 LINE L2 -175 3097 2949 180 316 0 0 chr13 42882783 42882840 -76862058 + L2 LINE L2 2907 2963 -309 522 269 0 44 chr13 42882928 42883088 -76861810 + L2 LINE L2 3161 3313 0 435 253 129 39 chr13 42883235 42883413 -76861485 - L2 LINE L2 -18 3295 3102 232 209 42 49 chr13 42884070 42884176 -76860722 - MIR SINE MIR -73 135 42 553 246 67 58 chr13 42884180 42884404 -76860494 - L1MC5 LINE L1 -30 7931 7706 233 283 0 0 chr13 42884485 42884545 -76860353 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 290 164 18 0 chr13 42884608 42884663 -76860235 + AluS SINE Alu 2 57 -242 531 333 44 27 chr13 42884808 42885033 -76859865 - MER115 DNA AcHobo -375 318 90 731 228 109 50 chr13 42885162 42885190 -76859708 + MLT1E3 LTR MaLR 4 29 -595 1574 213 133 42 chr13 42885190 42885623 -76859275 + MLT2B1 LTR ERVL 3 484 -36 414 0 0 0 chr13 42885623 42885669 -76859229 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1574 213 133 42 chr13 42885669 42885710 -76859188 + MLT2B1 LTR ERVL 484 520 0 731 228 109 50 chr13 42885710 42886037 -76858861 + MLT1E3 LTR MaLR 29 387 -237 503 132 0 0 chr13 42886153 42886229 -76858669 - AluS SINE Alu -235 77 2 217 273 45 34 chr13 42887474 42887562 -76857336 - MIR3 SINE MIR -2 206 118 240 291 97 10 chr13 42887863 42887966 -76856932 + MIR3 SINE MIR 85 196 -12 473 92 0 0 chr13 42888853 42888918 -76855980 + Alu SINE Alu 227 291 -19 667 251 96 17 chr13 42888938 42889177 -76855721 + MER112 DNA MER1_type 2 259 -1 221 312 0 64 chr13 42889602 42889711 -76855187 + MIR SINE MIR 87 188 -74 399 301 18 24 chr13 42889834 42890000 -76854898 - MIR SINE MIR -16 246 82 7501 42 5 0 chr13 42890108 42891667 -76853231 + L1PA6 LINE L1 4585 6149 -5 198 167 0 0 chr13 42891682 42891718 -76853180 + A-rich Low_complexity Low_complexity 1 36 0 244 266 133 16 chr13 42891719 42891847 -76853051 + L1MC5 LINE L1 7743 7885 -76 973 198 62 41 chr13 42891856 42892099 -76852799 + L1MC/D LINE L1 5387 5634 -2174 218 223 146 29 chr13 42892343 42892446 -76852452 - MIR3 SINE MIR -27 181 67 806 180 0 0 chr13 42892857 42892985 -76851913 + FLAM_C SINE Alu 1 128 -5 2197 120 7 10 chr13 42894117 42894425 -76850473 + AluSx SINE Alu 2 308 -4 622 197 116 34 chr13 42894425 42894658 -76850240 + L1M4 LINE L1 3091 3342 -2804 2771 221 68 41 chr13 42894680 42895369 -76849529 + MER21B LTR ERV1 20 732 -131 192 77 0 0 chr13 42895369 42895395 -76849503 + (AATTG)n Simple_repeat Simple_repeat 1 26 0 2771 221 68 41 chr13 42895395 42895459 -76849439 + MER21B LTR ERV1 732 793 -70 1459 228 32 39 chr13 42895489 42895924 -76848974 + L1M4 LINE L1 3340 3771 -2375 2241 107 3 19 chr13 42896084 42896393 -76848505 + AluSx SINE Alu 5 308 -4 472 200 0 27 chr13 42896527 42896637 -76848261 + L1MC5 LINE L1 7808 7914 -47 2573 238 83 29 chr13 42896699 42898301 -76846597 + L1M4 LINE L1 48 1821 -4825 187 283 44 53 chr13 42898969 42899082 -76845816 - MIR SINE MIR 0 262 151 2350 110 0 0 chr13 42899555 42899854 -76845044 - AluSq SINE Alu -14 299 1 425 222 21 65 chr13 42899904 42900109 -76844789 - MLT1H LTR MaLR -53 496 241 1794 168 3 0 chr13 42900415 42900700 -76844198 + AluJb SINE Alu 5 290 -22 236 296 0 0 chr13 42901449 42901503 -76843395 + MIR SINE MIR 94 147 -115 1227 102 6 6 chr13 42902059 42902235 -76842663 + L1P5 LINE L1 5570 5745 -409 434 70 23 105 chr13 42902335 42902421 -76842477 + L1MB5 LINE L1 6090 6168 -6 232 277 53 11 chr13 42902435 42902529 -76842369 - MLT1J LTR MaLR -310 201 104 219 209 99 55 chr13 42902736 42902827 -76842071 + MIR3 SINE MIR 89 183 -25 2702 191 111 44 chr13 42903513 42904213 -76840685 - MER21B LTR ERV1 -57 806 60 2649 184 86 12 chr13 42904319 42905048 -76839850 + L1MB3 LINE L1 4782 5593 -590 1509 134 14 28 chr13 42905052 42905335 -76839563 + L1MB3 LINE L1 5904 6182 -1 818 280 36 18 chr13 42905367 42905753 -76839145 + L1M4 LINE L1 2265 2657 -3989 797 286 97 19 chr13 42906163 42906534 -76838364 + LTR16C LTR ERVL 92 491 0 475 318 179 14 chr13 42906709 42907061 -76837837 - L2 LINE L2 -765 2549 2140 508 254 164 0 chr13 42907320 42907485 -76837413 + MIR SINE MIR 14 205 -57 2303 91 3 0 chr13 42907558 42907865 -76837033 + AluSp SINE Alu 1 308 -5 911 176 74 0 chr13 42908542 42908718 -76836180 - MER5A DNA MER1_type 0 189 1 684 251 25 6 chr13 42909145 42909308 -76835590 - Charlie8 DNA MER1_type -2241 176 11 215 196 36 0 chr13 42909318 42909374 -76835524 - L2 LINE L2 -541 2773 2716 642 225 33 33 chr13 42909798 42909949 -76834949 - MLT1G LTR MaLR 0 590 440 216 135 216 27 chr13 42910082 42910156 -76834742 + MIR SINE MIR 33 120 -88 1951 129 7 7 chr13 42910676 42910970 -76833928 - AluSx SINE Alu -18 294 1 601 216 32 16 chr13 42910970 42911146 -76833752 - L1MEc LINE L1 -4310 2086 1905 2459 281 35 29 chr13 42911166 42911936 -76832962 - HERV16 LTR ERVL -3667 1329 555 648 165 0 19 chr13 42912021 42912124 -76832774 - FRAM SINE Alu -16 160 60 462 274 68 7 chr13 42912491 42912637 -76832261 + MER117 DNA MER1_type 6 160 -37 196 270 243 0 chr13 42912835 42912909 -76831989 - MIR3 SINE MIR -54 154 63 1789 159 0 3 chr13 42913483 42913784 -76831114 - AluJb SINE Alu -12 300 1 372 301 9 0 chr13 42913853 42913966 -76830932 - MIR SINE MIR -70 192 79 385 333 18 0 chr13 42915184 42915298 -76829600 + MIR3 SINE MIR 86 201 -7 696 97 11 0 chr13 42915459 42915552 -76829346 - AluSq/x SINE Alu -204 108 15 505 317 112 18 chr13 42916108 42916332 -76828566 + MIR SINE MIR 9 253 -9 207 180 45 112 chr13 42916367 42916456 -76828442 + MIR SINE MIR 69 151 -57 1780 144 7 7 chr13 42917144 42917436 -76827462 + AluSx SINE Alu 1 292 -20 393 211 35 35 chr13 42917601 42917715 -76827183 - MER112 DNA MER1_type 0 260 147 2155 59 0 24 chr13 42917765 42918076 -76826822 + AluY SINE Alu 1 304 0 311 270 53 112 chr13 42918707 42918859 -76826039 - MIR SINE MIR -65 143 1 1080 123 57 75 chr13 42919439 42919667 -76825231 - AluJo SINE Alu 0 312 89 794 220 109 43 chr13 42919767 42919829 -76825069 - L1MEc LINE L1 -2987 3228 3172 2117 111 3 0 chr13 42919829 42920136 -76824762 - AluSp SINE Alu -5 308 1 794 220 109 43 chr13 42920136 42920469 -76824429 - L1MEc LINE L1 -3043 3172 2807 * 1232 235 40 9 chr13 42920462 42920883 -76824015 - L1MEc LINE L1 -3873 2523 2090 2058 136 0 3 chr13 42920886 42921194 -76823704 - AluSx SINE Alu -5 307 1 287 288 0 0 chr13 42922062 42922128 -76822770 - MIR SINE MIR -13 249 184 316 329 169 30 chr13 42922326 42922563 -76822335 - L3 LINE CR1 -29 1548 1279 560 319 32 0 chr13 42923057 42923214 -76821684 + L2 LINE L2 3111 3272 0 197 118 59 0 chr13 42923499 42923533 -76821365 + MIR SINE MIR 109 144 -64 200 326 38 53 chr13 42923852 42923984 -76820914 - L3 LINE CR1 -32 1545 1416 607 321 80 13 chr13 42924296 42924533 -76820365 + MIR SINE MIR 9 261 -1 303 293 154 8 chr13 42924591 42924714 -76820184 + MIR SINE MIR 58 198 -64 311 296 10 0 chr13 42924722 42924820 -76820078 + MER94 DNA DNA 1 99 -35 1760 64 0 0 chr13 42924891 42925110 -76819788 - AluY SINE Alu -9 302 84 1467 177 7 40 chr13 42925179 42925478 -76819420 + AluJo SINE Alu 19 307 -5 216 198 359 38 chr13 42925820 42925926 -76818972 - MIR SINE MIR -107 155 16 263 307 193 9 chr13 42926431 42926545 -76818353 + MIR SINE MIR 96 230 -32 22 0 0 0 chr13 42926564 42926586 -76818312 + AT_rich Low_complexity Low_complexity 1 22 0 1907 112 24 10 chr13 42926590 42926884 -76818014 + AluSx SINE Alu 1 298 -14 456 337 87 0 chr13 42927011 42927183 -76817715 + MIR3 SINE MIR 2 143 -65 2165 104 0 3 chr13 42927712 42928009 -76816889 - AluSq SINE Alu -15 298 3 261 242 17 92 chr13 42928061 42928181 -76816717 + L2 LINE L2 3151 3261 -52 767 180 16 0 chr13 42928208 42928336 -76816562 + AluJo SINE Alu 2 131 -181 1950 137 0 0 chr13 42928528 42928887 -76816011 - AluSx SINE Alu 0 359 1 691 305 32 28 chr13 42928948 42929197 -76815701 + MIR SINE MIR 7 256 -6 1999 123 7 13 chr13 42929999 42930300 -76814598 + AluSx SINE Alu 1 299 -13 898 188 0 0 chr13 42930300 42930460 -76814438 + AluJo SINE Alu 134 293 -19 184 248 67 86 chr13 42931384 42931489 -76813409 + MIR SINE MIR 30 132 -76 3592 271 69 63 chr13 42931648 42931920 -76812978 - HAL1 LINE L1 -429 2078 1809 1694 177 18 81 chr13 42931920 42932305 -76812593 - MLT1A1 LTR MaLR -4 361 1 3592 271 69 63 chr13 42932305 42934096 -76810802 - HAL1 LINE L1 -698 1809 3 904 184 0 0 chr13 42934353 42934505 -76810393 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr13 42934651 42934675 -76810223 + AT_rich Low_complexity Low_complexity 1 24 0 2094 86 0 24 chr13 42936173 42936464 -76808434 - AluY SINE Alu -12 299 16 547 181 16 50 chr13 42936744 42936759 -76808139 + L1P3 LINE L1 5477 5491 -671 4702 57 2 12 chr13 42936759 42937354 -76807544 - L1PA7 LINE L1 0 6154 5566 547 181 16 50 chr13 42937354 42937450 -76807448 + L1PA7 LINE L1 5491 5581 -581 2124 112 0 0 chr13 42937454 42937749 -76807149 + AluY SINE Alu 1 295 -16 944 260 22 5 chr13 42938078 42938301 -76806597 - MIR SINE MIR 0 262 36 437 224 28 56 chr13 42938301 42938444 -76806454 - L1MC/D LINE L1 -2012 5796 5658 1986 123 13 25 chr13 42938483 42938799 -76806099 + AluSx SINE Alu 1 312 0 231 336 44 9 chr13 42939170 42939283 -76805615 + MIR3 SINE MIR 38 154 -54 433 355 15 30 chr13 42939332 42939535 -76805363 + L2 LINE L2 2848 3047 -266 1007 226 51 117 chr13 42943230 42943800 -76801098 + L2 LINE L2 2787 3313 0 2903 205 62 10 chr13 42945283 42945897 -76799001 - MER82 DNA MER2_type -7 646 1 199 201 191 92 chr13 42945948 42946071 -76798827 - MIR SINE MIR -66 142 16 415 314 39 13 chr13 42946360 42946513 -76798385 + MIR3 SINE MIR 9 165 -43 21 36 0 0 chr13 42947163 42947191 -76797707 + AT_rich Low_complexity Low_complexity 1 28 0 418 291 148 22 chr13 42948492 42948715 -76796183 + MIR SINE MIR 10 260 -2 1181 195 7 77 chr13 42948833 42948987 -76795911 + MLT1D LTR MaLR 247 356 -149 872 132 0 22 chr13 42948987 42949123 -76795775 - FLAM_C SINE Alu 0 133 1 1181 195 7 77 chr13 42949123 42949264 -76795634 + MLT1D LTR MaLR 356 505 0 267 246 8 67 chr13 42949388 42949522 -76795376 + GA-rich Low_complexity Low_complexity 5 130 0 1101 239 88 73 chr13 42949757 42950302 -76794596 + HAL1 LINE L1 1238 1790 -717 1061 216 46 0 chr13 42950361 42950579 -76794319 + AluJb SINE Alu 85 312 0 287 164 16 0 chr13 42950579 42950640 -76794258 + GA-rich Low_complexity Low_complexity 4 65 0 922 243 112 36 chr13 42950646 42951084 -76793814 + HAL1 LINE L1 1869 2349 -158 2093 97 10 0 chr13 42951084 42951382 -76793516 + AluSq SINE Alu 1 301 -12 922 243 112 36 chr13 42951382 42951436 -76793462 + HAL1 LINE L1 2349 2398 -109 338 0 0 23 chr13 42951464 42951507 -76793391 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 8057 8 0 0 chr13 42951507 42952546 -76792352 - L1PA3 LINE L1 -10 6145 5108 7522 32 0 0 chr13 42952546 42953427 -76791471 + L1PA3 LINE L1 4229 5109 -1037 317 305 118 17 chr13 42953585 42953724 -76791174 - MIR SINE MIR -81 181 32 510 295 31 16 chr13 42955981 42956174 -76788724 + MIR SINE MIR 39 234 -28 271 340 17 8 chr13 42956417 42956627 -76788271 - L1M3 LINE L1 -345 5826 5617 1821 100 52 8 chr13 42958330 42958580 -76786318 - AluSc SINE Alu -5 304 44 213 333 0 0 chr13 42960980 42961040 -76783858 + CT-rich Low_complexity Low_complexity 1 60 0 755 219 38 0 chr13 42964362 42964522 -76780376 + MER5A DNA MER1_type 5 170 -19 648 309 88 5 chr13 42967672 42967889 -76777009 - MIR SINE MIR -6 256 22 327 325 81 16 chr13 42968499 42968622 -76776276 + MIR SINE MIR 1 131 -131 563 179 50 1 chr13 42968893 42969026 -76775872 + MLT1B LTR MaLR 1 125 -265 1171 181 15 31 chr13 42969115 42969375 -76775523 + MLT1B LTR MaLR 135 390 0 202 167 33 17 chr13 42969425 42969485 -76775413 + T-rich Low_complexity Low_complexity 5 65 0 24 0 0 0 chr13 42969489 42969513 -76775385 + AT_rich Low_complexity Low_complexity 1 24 0 511 241 43 32 chr13 42970736 42970923 -76773975 - MLT1C LTR MaLR -3 464 276 1929 141 0 23 chr13 42970971 42971275 -76773623 - AluSx SINE Alu -15 297 1 238 269 26 13 chr13 42971702 42971780 -76773118 + L2 LINE L2 2992 3070 -202 2328 107 0 0 chr13 42972694 42973049 -76771849 - L1P LINE L1 -1263 4883 4529 231 189 139 50 chr13 42973451 42973631 -76771267 - Charlie7 DNA MER1_type -67 2545 2350 667 258 113 56 chr13 42973636 42973938 -76770960 - MLT1H LTR MaLR 0 549 231 1735 137 8 4 chr13 42973966 42974228 -76770670 - AluSc SINE Alu -3 306 44 3759 171 66 34 chr13 42974228 42975108 -76769790 - L1MC2 LINE L1 -14 6330 5423 1684 209 124 26 chr13 42975277 42976004 -76768894 - Charlie7 DNA MER1_type -294 2318 1521 348 254 164 38 chr13 42976004 42976217 -76768681 - Charlie7 DNA MER1_type -2286 326 87 737 206 139 10 chr13 42976875 42977069 -76767829 - MER20 DNA MER1_type 0 219 1 1335 270 24 34 chr13 42977452 42977936 -76766962 + L2 LINE L2 2542 3020 -293 1862 155 21 3 chr13 42977936 42978265 -76766633 + MSTB LTR MaLR 91 425 -1 1326 198 49 34 chr13 42978583 42978907 -76765991 + MLT1A1 LTR MaLR 35 363 -2 1949 160 7 74 chr13 42979099 42979517 -76765381 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr13 42979517 42979541 -76765357 + AT_rich Low_complexity Low_complexity 1 24 0 2011 154 3 7 chr13 42979691 42979996 -76764902 - AluSx SINE Alu -4 308 5 223 327 19 0 chr13 42980128 42980180 -76764718 + L2 LINE L2 3134 3186 -86 297 304 68 68 chr13 42980273 42980523 -76764375 + MLT1J LTR MaLR 101 350 -161 1356 274 68 54 chr13 42980523 42981714 -76763184 - L1MEd LINE L1 -4604 1525 323 383 379 9 23 chr13 42982014 42982233 -76762665 + L1MC4a LINE L1 5708 5923 -1885 259 212 24 71 chr13 42982424 42982509 -76762389 + MIR SINE MIR 182 262 0 2526 69 0 0 chr13 42982621 42982924 -76761974 - AluSp SINE Alu -10 303 1 1846 220 82 76 chr13 42983995 42984164 -76760734 - MER50 LTR ERV1 0 734 567 2151 93 17 0 chr13 42984164 42984455 -76760443 + AluSq SINE Alu 1 296 -17 1846 220 82 76 chr13 42984455 42984468 -76760430 - MER50 LTR ERV1 -167 567 556 284 0 28 0 chr13 42984468 42984504 -76760394 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1846 220 82 76 chr13 42984504 42985043 -76759855 - MER50 LTR ERV1 -178 556 8 222 37 0 0 chr13 42986057 42986084 -76758814 - MIR SINE MIR -64 144 118 238 254 70 0 chr13 42986775 42986856 -76758042 + MIR3 SINE MIR 75 159 -49 2317 101 3 0 chr13 42987589 42987886 -76757012 - AluSg SINE Alu -12 298 1 778 330 83 46 chr13 42988539 42988802 -76756096 + L2 LINE L2 2329 2581 -691 2154 141 82 25 chr13 42988802 42989207 -76755691 - MSTA LTR MaLR 0 428 1 778 330 83 46 chr13 42989207 42989646 -76755252 + L2 LINE L2 2581 3064 -208 317 242 0 11 chr13 42989966 42990061 -76754837 - L1ME LINE L1 -3775 2305 2212 228 347 8 0 chr13 42990340 42990464 -76754434 - L1ME LINE L1 -4579 1682 1558 436 268 42 38 chr13 42990495 42990708 -76754190 + L1MC5 LINE L1 7321 7534 -427 431 283 73 26 chr13 42991088 42991279 -76753619 - L1ME LINE L1 -4814 1268 1069 302 278 38 22 chr13 42991343 42991579 -76753319 - L1ME LINE L1 -5040 1043 807 368 319 128 14 chr13 42992370 42992511 -76752387 + L2 LINE L2 3116 3272 0 485 244 37 7 chr13 42992513 42992648 -76752250 - MIR SINE MIR -38 224 86 25 31 0 0 chr13 42992995 42993027 -76751871 + AT_rich Low_complexity Low_complexity 1 32 0 632 105 21 6 chr13 42993028 42993174 -76751724 - L1MC1 LINE L1 0 6333 6155 258 244 64 0 chr13 42993702 42993780 -76751118 + MIR SINE MIR 93 175 -87 291 54 0 0 chr13 42994750 42994787 -76750111 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 268 177 26 chr13 42995347 42995549 -76749349 - MIR3 SINE MIR -4 258 35 208 368 110 13 chr13 42995961 42996189 -76748709 + L2 LINE L2 2926 3175 -97 289 268 147 45 chr13 42997173 42997321 -76747577 + MIR SINE MIR 23 189 -73 478 234 117 7 chr13 42997321 42997475 -76747423 + MER5B DNA MER1_type 4 174 -4 203 140 18 105 chr13 42998900 42998957 -76745941 + L2 LINE L2 3175 3226 -87 501 291 34 17 chr13 42999306 42999477 -76745421 - MIR SINE MIR -65 143 5 572 246 40 75 chr13 43000381 43000465 -76744433 - MIR SINE MIR -70 192 107 186 43 0 0 chr13 43000465 43000488 -76744410 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 572 246 40 75 chr13 43000488 43000602 -76744296 - MIR SINE MIR -155 107 1 1056 146 0 0 chr13 43002360 43002538 -76742360 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 504 294 29 69 chr13 43002548 43002824 -76742074 + MLT1K LTR MaLR 319 583 -5 291 307 105 18 chr13 43003239 43003353 -76741545 - L2 LINE L2 -16 3256 3133 475 315 30 0 chr13 43003633 43003798 -76741100 + L2 LINE L2 3133 3302 -11 621 315 97 59 chr13 43003810 43004283 -76740615 - L3 LINE CR1 -407 1170 680 343 308 304 9 chr13 43004372 43004694 -76740204 - L3 LINE CR1 -880 697 281 185 0 0 39 chr13 43006058 43006084 -76738814 + (TAA)n Simple_repeat Simple_repeat 2 26 0 28 29 0 0 chr13 43006320 43006355 -76738543 + AT_rich Low_complexity Low_complexity 1 35 0 2171 133 0 0 chr13 43006637 43006939 -76737959 + AluSg SINE Alu 2 303 -7 401 316 51 19 chr13 43008914 43009072 -76735826 + MIR3 SINE MIR 3 165 -43 289 287 37 0 chr13 43009578 43009584 -76735314 + (CATATA)n Simple_repeat Simple_repeat 3 7 -107 248 75 0 25 chr13 43009584 43009624 -76735274 + (TATG)n Simple_repeat Simple_repeat 2 40 0 289 287 37 0 chr13 43009624 43009725 -76735173 + (CATATA)n Simple_repeat Simple_repeat 7 114 0 180 77 0 0 chr13 43010424 43010450 -76734448 + (TAGA)n Simple_repeat Simple_repeat 3 28 0 315 0 0 0 chr13 43010714 43010749 -76734149 + (CA)n Simple_repeat Simple_repeat 2 36 0 2842 105 54 13 chr13 43010974 43011421 -76733477 - MER4C LTR ERV1 0 465 1 1019 121 0 0 chr13 43011459 43011600 -76733298 + AluSg/x SINE Alu 163 303 -9 291 325 5 78 chr13 43011698 43011829 -76733069 + MIR SINE MIR 34 146 -116 2257 98 0 14 chr13 43011829 43012125 -76732773 + AluSx SINE Alu 14 305 -7 291 325 5 78 chr13 43012125 43012199 -76732699 + MIR SINE MIR 146 224 -38 1427 207 55 65 chr13 43012452 43012945 -76731953 + L1 LINE L1 2294 2781 -3365 1034 209 4 4 chr13 43012947 43013177 -76731721 + L1 LINE L1 3776 4005 -2141 3819 165 98 31 chr13 43013177 43014099 -76730799 + L1MC3 LINE L1 6803 7785 0 330 291 112 8 chr13 43014528 43014662 -76730236 - MIR SINE MIR -68 194 47 286 339 50 16 chr13 43015464 43015585 -76729313 + L3 LINE CR1 1381 1505 -72 2430 157 16 9 chr13 43016230 43016669 -76728229 - LTR47B LTR ERVL -1 442 1 2267 95 10 0 chr13 43016832 43017126 -76727772 + AluSx SINE Alu 1 297 -15 983 180 14 24 chr13 43017157 43017368 -76727530 + L1MB3 LINE L1 5958 6166 -17 22 35 0 0 chr13 43017373 43017402 -76727496 + AT_rich Low_complexity Low_complexity 1 29 0 199 265 157 20 chr13 43017867 43017969 -76726929 - L3 LINE CR1 -170 1407 1292 1143 315 139 30 chr13 43018778 43019707 -76725191 - L2 LINE L2 -1 3312 2281 555 326 39 72 chr13 43019705 43020095 -76724803 - L2 LINE L2 0 3272 2896 * 2222 134 0 20 chr13 43020319 43020663 -76724235 - MER1B DNA MER1_type 0 337 1 1670 176 30 19 chr13 43021870 43022233 -76722665 + L1MC2 LINE L1 5969 6335 -9 1008 323 132 0 chr13 43022307 43022740 -76722158 - L2 LINE L2 -1089 2225 1736 230 293 84 58 chr13 43022768 43022801 -76722097 - L2 LINE L2 -2228 1086 1055 2537 46 7 3 chr13 43022801 43023105 -76721793 + AluY SINE Alu 1 305 -6 230 293 84 58 chr13 43023105 43023262 -76721636 - L2 LINE L2 -2259 1055 891 385 291 67 22 chr13 43023727 43023861 -76721037 - MIR SINE MIR -78 184 45 24 77 0 0 chr13 43024618 43024670 -76720228 + AT_rich Low_complexity Low_complexity 1 52 0 380 360 48 36 chr13 43024684 43024934 -76719964 + L1ME LINE L1 58 310 -5809 643 298 46 36 chr13 43025455 43025689 -76719209 + L1ME LINE L1 1097 1327 -4983 2266 128 0 0 chr13 43025689 43026001 -76718897 - AluSq SINE Alu -1 312 1 643 298 46 36 chr13 43026001 43026349 -76718549 + L1ME LINE L1 1327 1729 -4581 39 22 0 0 chr13 43026374 43026420 -76718478 + AT_rich Low_complexity Low_complexity 1 46 0 424 349 121 8 chr13 43026432 43026681 -76718217 + L1ME LINE L1 1832 2108 -4202 1941 245 68 56 chr13 43026708 43027138 -76717760 + L1MEc LINE L1 1372 1795 -4420 2368 93 3 0 chr13 43027138 43027448 -76717450 + AluSp SINE Alu 3 313 0 1941 245 68 56 chr13 43027448 43028495 -76716403 + L1MEc LINE L1 1795 2941 -3274 489 336 68 32 chr13 43028946 43029189 -76715709 + L2 LINE L2 2917 3179 -134 1166 201 146 19 chr13 43029189 43029457 -76715441 + AluJo SINE Alu 1 302 0 489 336 68 32 chr13 43029457 43029582 -76715316 + L2 LINE L2 3179 3298 -15 686 270 76 30 chr13 43029609 43029913 -76714985 + L2 LINE L2 2996 3313 0 250 191 0 32 chr13 43030453 43030516 -76714382 + GA-rich Low_complexity Low_complexity 3 63 0 697 190 0 22 chr13 43030897 43031034 -76713864 - MER94 DNA DNA 0 134 1 1162 152 52 44 chr13 43031362 43031612 -76713286 + MER33 DNA MER1_type 1 252 -72 262 280 270 35 chr13 43032249 43032449 -76712449 - L2 LINE L2 -484 2830 2584 336 306 181 14 chr13 43032651 43032867 -76712031 - L1ME4a LINE L1 -268 5853 5602 22 0 0 0 chr13 43033020 43033042 -76711856 + AT_rich Low_complexity Low_complexity 1 22 0 181 301 161 21 chr13 43033053 43033146 -76711752 - L2 LINE L2 -1 3271 3166 21 36 0 0 chr13 43033260 43033288 -76711610 + AT_rich Low_complexity Low_complexity 1 28 0 1361 270 64 33 chr13 43034167 43034915 -76709983 - L2 LINE L2 0 3313 2542 539 171 86 0 chr13 43035053 43035170 -76709728 + MSTB-int LTR MaLR 1520 1646 -5 2177 159 55 15 chr13 43035182 43035584 -76709314 + MSTB LTR MaLR 9 426 0 28 61 0 0 chr13 43036307 43036356 -76708542 + AT_rich Low_complexity Low_complexity 1 49 0 198 91 0 0 chr13 43036817 43036850 -76708048 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6702 68 9 2 chr13 43036850 43038013 -76706885 - L1PA7 LINE L1 -18 6136 4979 180 0 0 0 chr13 43038034 43038054 -76706844 + (C)n Simple_repeat Simple_repeat 1 20 0 1996 29 25 0 chr13 43088627 43088869 -76656029 - L1PA4 LINE L1 -1 6154 5907 6224 148 24 30 chr13 43089126 43089470 -76655428 + L1MA4 LINE L1 4145 4489 -1811 1469 138 5 5 chr13 43089470 43089687 -76655211 - AluSq SINE Alu -96 217 1 6224 148 24 30 chr13 43089687 43091509 -76653389 + L1MA4 LINE L1 4489 6294 -6 1285 195 60 4 chr13 43091536 43091803 -76653095 + L1ME1 LINE L1 5876 6157 -9 2455 136 35 0 chr13 43092168 43092537 -76652361 - MLT1B LTR MaLR 0 390 9 376 351 65 10 chr13 43094724 43095017 -76649881 + L2 LINE L2 2426 2734 -580 269 258 30 0 chr13 43095143 43095209 -76649689 + MLT1J2 LTR MaLR 67 134 -316 233 229 0 0 chr13 43095787 43095835 -76649063 + L2 LINE L2 3241 3288 -25 422 247 340 19 chr13 43095921 43096245 -76648653 + L2 LINE L2 2886 3313 0 934 66 29 0 chr13 43098345 43098482 -76646416 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 298 303 13 40 chr13 43098610 43098762 -76646136 - L2 LINE L2 -1 3312 3165 269 311 33 13 chr13 43100116 43100267 -76644631 + L2 LINE L2 1952 2105 -1209 7001 41 0 0 chr13 43100344 43101167 -76643731 - L1PA4 LINE L1 0 6155 5333 1834 101 4 14 chr13 43101163 43101440 -76643458 + L1PA4 LINE L1 5069 5342 -804 * 683 157 0 0 chr13 43101553 43101661 -76643237 + L1PA4 LINE L1 5979 6086 -69 271 0 0 77 chr13 43101661 43101700 -76643198 + L1P LINE L1 5307 5342 -830 186 340 0 0 chr13 43102264 43102314 -76642584 + L2 LINE L2 3248 3297 -16 332 291 136 31 chr13 43102351 43102521 -76642377 - MIR SINE MIR -63 199 6 544 279 111 13 chr13 43106364 43106590 -76638308 - MIR SINE MIR -3 259 12 1963 157 0 10 chr13 43107431 43107736 -76637162 + AluJb SINE Alu 1 302 -10 234 200 22 0 chr13 43107866 43107911 -76636987 + L2 LINE L2 3210 3255 -17 202 211 0 0 chr13 43107878 43107916 -76636982 + MIR SINE MIR 219 256 -6 * 254 304 152 6 chr13 43107930 43108101 -76636797 - MIR SINE MIR -65 197 2 243 351 41 23 chr13 43108136 43108307 -76636591 - MIR SINE MIR -40 222 49 4579 37 0 2 chr13 43108828 43109366 -76635532 + L1PA4 LINE L1 5608 6144 -11 26 64 0 0 chr13 43109366 43109413 -76635485 + AT_rich Low_complexity Low_complexity 1 47 0 429 20 0 0 chr13 43109497 43109547 -76635351 + (TG)n Simple_repeat Simple_repeat 1 50 0 494 269 113 72 chr13 43109547 43109963 -76634935 - L1ME LINE L1 -308 5813 5381 215 30 0 30 chr13 43110175 43110208 -76634690 + (TAA)n Simple_repeat Simple_repeat 3 34 0 4839 190 55 20 chr13 43110309 43111722 -76633176 - L1MD1 LINE L1 0 6242 4760 2278 108 7 0 chr13 43111722 43112018 -76632880 - AluSx SINE Alu -14 298 1 4839 190 55 20 chr13 43112018 43112168 -76632730 - L1MD1 LINE L1 -1482 4760 4617 1398 219 138 35 chr13 43112204 43112660 -76632238 + MLT1D LTR MaLR 1 503 -2 1597 230 32 60 chr13 43112678 43113264 -76631634 - L1MDa LINE L1 -5502 1038 236 1402 167 25 16 chr13 43113276 43113521 -76631377 - L1MDa LINE L1 -6291 249 3 542 245 50 31 chr13 43114018 43114177 -76630721 + MLT1I LTR MaLR 101 262 -147 2013 207 37 86 chr13 43114215 43114785 -76630113 - MLT1F LTR MaLR 0 542 1 588 181 145 24 chr13 43115766 43115932 -76628966 - MER53 DNA DNA -3 186 1 296 188 0 118 chr13 43116313 43116398 -76628500 - MIR SINE MIR -78 184 110 915 176 6 29 chr13 43116407 43116577 -76628321 + FRAM SINE Alu 1 166 0 256 329 0 0 chr13 43118522 43118592 -76626306 + (CGTG)n Simple_repeat Simple_repeat 4 73 0 496 286 95 5 chr13 43118983 43119193 -76625705 - MIR SINE MIR 0 262 34 786 270 72 41 chr13 43119212 43119531 -76625367 + MER102b DNA MER1_type 4 332 -9 5129 101 0 25 chr13 43119986 43120737 -76624161 - L1PB1 LINE L1 0 6151 5420 703 232 85 0 chr13 43120758 43120922 -76623976 + MER45A DNA AcHobo 1 178 0 1166 216 166 38 chr13 43121584 43122006 -76622892 - MLT1D LTR MaLR -8 497 22 849 309 116 40 chr13 43122039 43122935 -76621963 - L2 LINE L2 -181 3091 2123 2112 131 0 13 chr13 43123432 43123745 -76621153 - AluSx SINE Alu -3 309 1 1067 202 10 5 chr13 43123771 43123979 -76620919 + MER3 DNA MER1_type 1 209 0 197 254 0 63 chr13 43124199 43124262 -76620636 + L2 LINE L2 3253 3311 -2 2097 136 0 0 chr13 43124262 43124556 -76620342 + AluSx SINE Alu 1 294 -18 192 153 0 136 chr13 43124702 43124761 -76620137 - L2 LINE L2 -938 2376 2326 180 348 98 36 chr13 43124923 43125147 -76619751 - L3 LINE CR1 -793 784 547 685 171 92 75 chr13 43126277 43126505 -76618393 + MER106B DNA MER1_type 5 1059 0 195 217 330 28 chr13 43126510 43126616 -76618282 + L2 LINE L2 3124 3261 -11 2366 245 62 34 chr13 43127589 43128657 -76616241 - L1ME3A LINE L1 -28 6142 5052 1139 148 6 0 chr13 43128715 43128898 -76616000 - L1MA9 LINE L1 0 6312 6129 233 297 0 0 chr13 43128900 43128974 -76615924 - L1ME3A LINE L1 -1652 4494 4421 180 340 75 19 chr13 43129188 43129347 -76615551 - L2 LINE L2 -220 3052 2885 244 262 12 48 chr13 43130963 43131047 -76613851 - MLT1K LTR MaLR -318 270 190 317 357 8 0 chr13 43131346 43131475 -76613423 + MIR SINE MIR 2 131 -131 255 61 0 0 chr13 43131477 43131510 -76613388 + (CAT)n Simple_repeat Simple_repeat 3 35 0 263 221 10 125 chr13 43132806 43132910 -76611988 - MIR3 SINE MIR -48 160 69 787 224 29 11 chr13 43132992 43133166 -76611732 - MLT1J2 LTR MaLR -8 442 266 1099 193 28 5 chr13 43133173 43133386 -76611512 + MER20 DNA MER1_type 2 219 0 438 292 245 8 chr13 43133712 43134096 -76610802 + L2 LINE L2 2249 2723 -591 639 278 96 52 chr13 43134391 43134848 -76610050 + L2 LINE L2 2837 3313 0 279 202 0 31 chr13 43135573 43135686 -76609212 + MER69 DNA AcHobo 1 166 -1060 1791 222 53 52 chr13 43135686 43136566 -76608332 + MER69 DNA AcHobo 137 2427 -99 1893 95 0 0 chr13 43136806 43137067 -76607831 - AluY SINE Alu 0 300 40 194 160 260 40 chr13 43140064 43140164 -76604734 + MIR SINE MIR 120 241 -21 350 252 19 29 chr13 43141268 43141371 -76603527 + MIR SINE MIR 100 201 -61 602 265 126 0 chr13 43141618 43141769 -76603129 + MER45A DNA AcHobo 8 177 -1 380 209 11 11 chr13 43144496 43144587 -76600311 - MLT1K LTR MaLR -3 585 495 234 185 62 15 chr13 43144844 43144909 -76599989 - MLT1K LTR MaLR -512 76 9 2318 113 0 0 chr13 43145547 43145857 -76599041 + AluSx SINE Alu 1 310 -2 2024 208 47 16 chr13 43146113 43146603 -76598295 + MLT1D LTR MaLR 1 505 0 2431 153 10 0 chr13 43146687 43147078 -76597820 - MER57A LTR ERV1 -1 402 8 394 271 31 47 chr13 43147095 43147224 -76597674 + MIR3 SINE MIR 66 192 -16 251 219 106 0 chr13 43149410 43149509 -76595389 + MIR3 SINE MIR 78 188 -20 369 0 0 0 chr13 43150668 43150709 -76594189 + (CA)n Simple_repeat Simple_repeat 1 41 0 698 283 21 13 chr13 43150755 43150992 -76593906 + MIR SINE MIR 23 261 -1 305 343 81 6 chr13 43151186 43151358 -76593540 - MIR3 SINE MIR -20 188 4 2173 129 7 0 chr13 43151421 43151731 -76593167 + AluSx SINE Alu 1 312 0 207 0 0 0 chr13 43152191 43152214 -76592684 + (A)n Simple_repeat Simple_repeat 1 23 0 2681 147 22 2 chr13 43152255 43152671 -76592227 + MSTB LTR MaLR 1 424 -2 466 200 46 23 chr13 43152717 43152847 -76592051 + L2 LINE L2 3181 3313 0 204 254 200 9 chr13 43152896 43153006 -76591892 + MIR SINE MIR 92 222 -40 2103 109 31 3 chr13 43153153 43153446 -76591452 + AluSx SINE Alu 1 301 -11 182 314 86 29 chr13 43154283 43154458 -76590440 + MIR SINE MIR 77 261 -1 1853 157 0 28 chr13 43154493 43154811 -76590087 + AluJo SINE Alu 1 309 -3 330 26 0 0 chr13 43155446 43155485 -76589413 + (TG)n Simple_repeat Simple_repeat 2 40 0 1134 52 0 8 chr13 43155866 43156000 -76588898 + AluY SINE Alu 1 133 -178 282 248 44 35 chr13 43156055 43156168 -76588730 + MIR SINE MIR 79 192 -70 368 331 110 33 chr13 43156414 43156779 -76588119 - L2 LINE L2 -8 3264 2872 1438 199 58 17 chr13 43157010 43157183 -76587715 - AluJo SINE Alu -4 308 117 366 61 0 0 chr13 43157183 43157232 -76587666 + (TG)n Simple_repeat Simple_repeat 2 50 0 1438 199 58 17 chr13 43157232 43157350 -76587548 - AluJo SINE Alu -195 117 5 2224 138 24 162 chr13 43159496 43160034 -76584864 + LTR32 LTR ERVL 7 470 -1 188 348 22 22 chr13 43160183 43160272 -76584626 - MIR SINE MIR -172 90 2 404 251 78 63 chr13 43160343 43160534 -76584364 + MIR3 SINE MIR 15 208 0 203 294 44 0 chr13 43160818 43160886 -76584012 + MIR SINE MIR 96 166 -96 478 288 169 5 chr13 43162263 43162482 -76582416 + MIR SINE MIR 3 257 -5 517 222 136 25 chr13 43162490 43162688 -76582210 - MIR SINE MIR -6 256 37 242 235 0 74 chr13 43162898 43162979 -76581919 + MLT1L LTR MaLR 1 75 -540 2163 176 13 10 chr13 43163002 43163388 -76581510 - L1MB3 LINE L1 -109 6074 5688 2547 147 71 16 chr13 43163388 43163836 -76581062 + MER44D DNA MER2_type 1 528 -77 2132 172 8 3 chr13 43163924 43164285 -76580613 + MLT1A1 LTR MaLR 1 363 -2 218 301 0 24 chr13 43165057 43165140 -76579758 + GA-rich Low_complexity Low_complexity 2 82 0 289 269 77 31 chr13 43166241 43166371 -76578527 - MIR SINE MIR -56 206 71 313 295 107 0 chr13 43166743 43166855 -76578043 - L2 LINE L2 -28 3244 3121 238 208 152 88 chr13 43168637 43168762 -76576136 + L2 LINE L2 3136 3268 -4 189 0 0 0 chr13 43168803 43168824 -76576074 + (A)n Simple_repeat Simple_repeat 1 21 0 359 309 57 11 chr13 43170326 43170501 -76574397 - MIR SINE MIR -59 203 21 249 260 0 13 chr13 43170896 43170973 -76573925 + GA-rich Low_complexity Low_complexity 2 77 0 359 157 1 28 chr13 43172018 43172090 -76572808 + L1MC2 LINE L1 5861 5931 -257 * 6508 156 43 17 chr13 43172081 43173278 -76571620 - L1MCa LINE L1 -5179 1247 20 1177 185 29 8 chr13 43173281 43173519 -76571379 + L1MB8 LINE L1 5914 6156 -22 284 252 0 19 chr13 43173528 43173631 -76571267 + GA-rich Low_complexity Low_complexity 2 102 0 194 229 0 16 chr13 43173660 43173721 -76571177 + G-rich Low_complexity Low_complexity 2 61 0 527 250 132 5 chr13 43176421 43176633 -76568265 + MIR SINE MIR 12 250 -12 1659 184 70 28 chr13 43176894 43177253 -76567645 + MLT1A2 LTR MaLR 1 374 0 205 273 0 0 chr13 43177596 43177640 -76567258 + (TATG)n Simple_repeat Simple_repeat 4 47 0 209 330 82 0 chr13 43179379 43179476 -76565422 - L2 LINE L2 0 3313 3209 1972 112 0 0 chr13 43179494 43179783 -76565115 + AluSx SINE Alu 35 323 0 585 185 9 0 chr13 43180888 43180996 -76563902 + FLAM_A SINE Alu 34 142 0 216 67 0 0 chr13 43181483 43181513 -76563385 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 897 140 0 0 chr13 43181515 43181693 -76563205 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 439 267 25 43 chr13 43181928 43182089 -76562809 + L2 LINE L2 2925 3082 -190 183 445 27 7 chr13 43182163 43182309 -76562589 + L2 LINE L2 3124 3272 0 379 71 0 0 chr13 43184119 43184175 -76560723 - L1MB2 LINE L1 -1 6170 6115 1775 168 29 0 chr13 43184176 43184491 -76560407 - L1MB2 LINE L1 -173 6010 5687 255 161 0 0 chr13 43185078 43185134 -76559764 + (CA)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chr13 43185708 43185739 -76559159 + AT_rich Low_complexity Low_complexity 1 31 0 520 227 27 27 chr13 43187012 43187162 -76557736 + L1MC4 LINE L1 7473 7622 -420 * 1434 61 0 6 chr13 43187160 43187341 -76557557 - L1PA7 LINE L1 -142 6012 5833 1258 236 47 33 chr13 43187335 43187759 -76557139 + L1MC4 LINE L1 7613 8042 0 * 3431 50 0 0 chr13 43188754 43189173 -76555725 - L1PA8 LINE L1 0 6172 5754 533 42 0 0 chr13 43189173 43189245 -76555653 + L1P LINE L1 5270 5341 -831 294 259 110 52 chr13 43189286 43189595 -76555303 + L2 LINE L2 2348 2674 -640 1040 123 25 6 chr13 43189660 43189823 -76555075 - L1PA10 LINE L1 -12 6156 5991 360 347 54 77 chr13 43190059 43190408 -76554490 + L2 LINE L2 2923 3263 -9 214 270 56 11 chr13 43190963 43191052 -76553846 + L2 LINE L2 3138 3230 -42 334 323 89 22 chr13 43192093 43192336 -76552562 - MIR SINE MIR 0 262 8 820 250 207 25 chr13 43192377 43192959 -76551939 - LTR50 LTR ERVL -1 794 25 402 310 70 11 chr13 43193061 43193248 -76551650 - MIR SINE MIR -26 236 39 1046 224 80 32 chr13 43193273 43193612 -76551286 - MLT1C LTR MaLR 0 467 113 289 244 39 0 chr13 43193708 43193786 -76551112 - MLT1C LTR MaLR -379 88 8 1125 221 53 8 chr13 43196197 43196460 -76548438 + MLT1C LTR MaLR 193 467 0 2000 191 75 0 chr13 43197110 43197512 -76547386 - MSTB1 LTR MaLR 0 432 1 230 351 0 0 chr13 43197517 43197594 -76547304 + MER103 DNA DNA 36 112 -54 266 176 0 0 chr13 43198996 43199047 -76545851 - L2 LINE L2 0 3313 3263 262 254 15 0 chr13 43199168 43199235 -76545663 - MER91 DNA MER1_type -5 135 68 323 348 49 0 chr13 43199440 43199610 -76545288 - MIR SINE MIR -58 150 20 1099 177 10 19 chr13 43199629 43199838 -76545060 + MER3 DNA MER1_type 3 209 0 404 271 47 100 chr13 43200348 43200669 -76544229 + MER102b DNA MER1_type 35 338 -3 210 259 0 0 chr13 43200954 43201008 -76543890 + MIR SINE MIR 206 259 -3 198 327 59 30 chr13 43201400 43201501 -76543397 + L2 LINE L2 3150 3253 -19 22 0 0 0 chr13 43201664 43201686 -76543212 + AT_rich Low_complexity Low_complexity 1 22 0 294 298 69 55 chr13 43201691 43201980 -76542918 + L1ME LINE L1 5545 5837 -284 1802 174 0 20 chr13 43202086 43202384 -76542514 + AluJo SINE Alu 1 292 -20 1472 199 11 0 chr13 43202386 43202663 -76542235 - L1ME LINE L1 -529 5637 5358 * 1739 210 65 60 chr13 43202661 43203196 -76541702 + L1ME2 LINE L1 5639 6334 0 393 339 110 46 chr13 43203264 43203701 -76541197 + L2 LINE L2 2808 3272 0 342 331 34 29 chr13 43205709 43205884 -76539014 - L2 LINE L2 -173 3099 2924 908 210 0 6 chr13 43206388 43206564 -76538334 + MER5B DNA MER1_type 3 177 -1 1826 192 57 21 chr13 43206829 43207250 -76537648 - MER63B DNA MER1_type 0 436 1 210 224 0 0 chr13 43208356 43208405 -76536493 + (TG)n Simple_repeat Simple_repeat 2 50 0 3067 143 17 37 chr13 43208838 43209368 -76535530 - LTR27 LTR ERV1 -137 810 3 276 291 12 0 chr13 43209711 43209797 -76535101 - L2 LINE L2 -2 3270 3184 928 143 23 0 chr13 43211237 43211412 -76533486 + GA-rich Low_complexity Low_complexity 2 180 0 219 129 0 0 chr13 43211414 43211445 -76533453 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 200 86 86 0 chr13 43211723 43211758 -76533140 - MIR SINE MIR -55 153 116 1185 191 56 88 chr13 43212447 43212823 -76532075 - MLT2D LTR ERVL -48 366 3 466 287 50 36 chr13 43213761 43214079 -76530819 - MLT1I LTR MaLR -14 395 31 222 37 0 0 chr13 43214930 43214957 -76529941 + (A)n Simple_repeat Simple_repeat 1 27 0 974 257 62 54 chr13 43216290 43216738 -76528160 + LTR16A1 LTR ERVL 1 452 -5 409 318 18 12 chr13 43217064 43217234 -76527664 - MARNA DNA Mariner -41 545 375 399 303 107 11 chr13 43217505 43217683 -76527215 - L2 LINE L2 0 3313 3119 593 258 66 16 chr13 43218057 43218239 -76526659 - MIR SINE MIR -44 218 28 2911 119 21 5 chr13 43218289 43218716 -76526182 - MER57B LTR ERV1 0 434 1 690 286 70 39 chr13 43218892 43219249 -76525649 + L1ME4a LINE L1 5527 5894 -227 1897 108 63 4 chr13 43219668 43219936 -76524962 - AluSg SINE Alu -26 284 1 231 184 41 0 chr13 43220630 43220679 -76524219 + GA-rich Low_complexity Low_complexity 2 52 0 1640 221 8 21 chr13 43220925 43221300 -76523598 - MLT1A2 LTR MaLR -4 370 1 522 276 41 31 chr13 43222210 43222406 -76522492 + MLT1L LTR MaLR 418 615 0 643 237 19 0 chr13 43222531 43222687 -76522211 + MIR SINE MIR 33 191 -71 2403 75 14 0 chr13 43222855 43223147 -76521751 + AluSx SINE Alu 1 296 -16 397 230 158 54 chr13 43223332 43223667 -76521231 - L1ME4a LINE L1 -206 5915 5546 758 157 55 180 chr13 43224684 43224939 -76519959 - MER58A DNA MER1_type 0 224 2 337 235 0 78 chr13 43225384 43225486 -76519412 + MIR3 SINE MIR 69 162 -46 2282 169 86 21 chr13 43225811 43226297 -76518601 - MLT2B1 LTR ERVL 0 520 3 21 0 0 0 chr13 43226808 43226829 -76518069 + AT_rich Low_complexity Low_complexity 1 21 0 196 301 27 0 chr13 43226914 43226987 -76517911 + MIR SINE MIR 124 198 -64 396 238 36 0 chr13 43228058 43228142 -76516756 - HERV16 LTR ERVL -4909 87 1 667 292 70 23 chr13 43228164 43228457 -76516441 - LTR16A LTR ERVL -10 440 133 1136 334 76 34 chr13 43228696 43230307 -76514591 - HERV16 LTR ERVL -367 5287 3628 426 39 0 0 chr13 43230825 43230877 -76514021 + (TG)n Simple_repeat Simple_repeat 1 52 0 274 245 43 11 chr13 43231199 43231293 -76513605 - MER5A DNA MER1_type -84 105 9 2568 86 3 0 chr13 43231845 43232196 -76512702 - L1PA8 LINE L1 -1489 4657 4306 7211 63 16 0 chr13 43232198 43233681 -76511217 + L1PA8 LINE L1 4675 6172 0 184 330 39 50 chr13 43233830 43234009 -76510889 - MIR3 SINE MIR -2 206 30 421 257 140 47 chr13 43234560 43234577 -76510321 - MIR SINE MIR -16 246 232 462 230 18 9 chr13 43234577 43234690 -76510208 - MER81 DNA DNA 0 114 1 421 257 140 47 chr13 43234690 43234886 -76510012 - MIR SINE MIR -30 232 13 304 284 0 0 chr13 43235489 43235570 -76509328 - MIR SINE MIR -64 198 118 296 169 36 60 chr13 43236612 43236695 -76508203 - LTR67 LTR ERVL -5 552 472 312 318 9 9 chr13 43237084 43237201 -76507697 + MIR SINE MIR 19 134 -74 1018 150 0 0 chr13 43239183 43239336 -76505562 + FRAM SINE Alu 1 151 -25 209 288 19 19 chr13 43239427 43239517 -76505381 - MER5A DNA MER1_type 0 189 92 2657 48 0 0 chr13 43240172 43240481 -76504417 + AluY SINE Alu 1 309 -2 545 295 54 28 chr13 43241118 43241344 -76503554 + MIR SINE MIR 17 247 -15 409 282 176 25 chr13 43241759 43242242 -76502656 + L2 LINE L2 111 666 -2648 1757 229 35 53 chr13 43242243 43242316 -76502582 + MLT1D LTR MaLR 1 74 -431 2104 145 33 41 chr13 43242316 43242709 -76502189 + MLT1B LTR MaLR 1 390 0 1757 229 35 53 chr13 43242709 43243147 -76501751 + MLT1D LTR MaLR 74 503 -2 478 263 229 45 chr13 43243156 43243711 -76501187 + L2 LINE L2 670 1326 -1988 205 291 94 115 chr13 43243722 43243966 -76500932 + L2 LINE L2 3019 3257 -15 186 103 0 0 chr13 43243966 43243995 -76500903 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 190 290 81 16 chr13 43244255 43244317 -76500581 - L3b LINE CR1 -5 1578 1513 24 32 0 0 chr13 43244385 43244416 -76500482 + AT_rich Low_complexity Low_complexity 1 31 0 338 269 62 88 chr13 43245028 43245188 -76499710 - L2 LINE L2 0 3272 3117 299 241 99 43 chr13 43245408 43245549 -76499349 + MLT1J2 LTR MaLR 302 450 0 325 338 15 0 chr13 43245797 43245930 -76498968 - MER113 DNA MER1_type? -38 483 349 2283 151 88 103 chr13 43245931 43246454 -76498444 + MLT2B2 LTR ERVL 1 515 0 1210 294 38 21 chr13 43246455 43247013 -76497885 + L2 LINE L2 2750 3313 0 348 244 12 0 chr13 43247027 43247109 -76497789 - MER113 DNA MER1_type? -201 320 238 1340 189 55 32 chr13 43247118 43247498 -76497400 - LTR37A LTR ERV1 0 426 38 347 230 35 9 chr13 43247555 43247668 -76497230 - MER113 DNA MER1_type? -286 235 120 349 302 154 0 chr13 43247728 43247877 -76497021 - MER5A DNA MER1_type -9 180 9 206 232 71 0 chr13 43247971 43248027 -76496871 - L2 LINE L2 -567 2747 2688 814 282 70 4 chr13 43248711 43248904 -76495994 - L1ME1 LINE L1 -5 6161 5943 2256 104 14 0 chr13 43248904 43249201 -76495697 - AluSg SINE Alu -9 301 1 814 282 70 4 chr13 43249201 43249280 -76495618 - L1ME1 LINE L1 -223 5943 5871 2252 221 49 61 chr13 43249383 43250174 -76494724 - L1ME1 LINE L1 -746 5420 4640 494 277 123 5 chr13 43250398 43250593 -76494305 + MIR SINE MIR 35 252 -10 183 224 20 0 chr13 43250560 43250609 -76494289 + L2 LINE L2 3264 3313 0 * 2068 139 0 0 chr13 43250923 43251218 -76493680 + AluSx SINE Alu 1 295 -17 638 171 0 9 chr13 43251339 43251450 -76493448 - FLAM_A SINE Alu -8 134 25 632 177 44 55 chr13 43251503 43251684 -76493214 + MER53 DNA DNA 4 182 -7 * 1071 257 135 88 chr13 43251683 43252135 -76492763 + Zaphod DNA AcHobo 44 516 -3515 1289 168 5 0 chr13 43252244 43252453 -76492445 - MER2 DNA MER2_type -135 210 1 1170 186 114 45 chr13 43252453 43252899 -76491999 + Zaphod DNA AcHobo 515 991 -3040 1084 225 76 3 chr13 43252896 43253211 -76491687 + Zaphod DNA AcHobo 3595 3932 -99 * 180 291 93 46 chr13 43253976 43254127 -76490771 + L2 LINE L2 2938 3095 -177 368 270 67 32 chr13 43255351 43255546 -76489352 + MIR SINE MIR 31 229 -33 571 298 132 17 chr13 43255685 43255980 -76488918 - MER102a DNA MER1_type 0 330 2 354 258 153 0 chr13 43256149 43256273 -76488625 - MIR SINE MIR -62 200 58 519 311 110 18 chr13 43256839 43257304 -76487594 + L1MC4a LINE L1 5421 5941 -227 2188 62 66 4 chr13 43257790 43258063 -76486835 + AluY SINE Alu 1 290 -21 211 344 51 38 chr13 43258214 43258371 -76486527 + MIR SINE MIR 35 193 -69 377 240 8 33 chr13 43258422 43258543 -76486355 + MER104 DNA Tc2 1 118 -62 260 293 100 4 chr13 43259136 43259282 -76485616 - MIR SINE MIR -63 145 31 217 0 61 0 chr13 43259285 43259318 -76485580 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 425 290 124 14 chr13 43260091 43260236 -76484662 - MIR SINE MIR -96 166 6 2296 81 0 0 chr13 43260281 43260576 -76484322 + AluY SINE Alu 1 295 -16 269 321 0 45 chr13 43260707 43260819 -76484079 - L2 LINE L2 -48 3265 3159 1697 166 14 0 chr13 43260835 43261124 -76483774 + AluJb SINE Alu 1 293 -19 199 280 0 0 chr13 43261469 43261519 -76483379 - L2 LINE L2 -809 2505 2456 1029 183 22 27 chr13 43261697 43261921 -76482977 + AluJo SINE Alu 87 309 -3 528 59 0 0 chr13 43261922 43261953 -76482945 + (GGAA)n Simple_repeat Simple_repeat 1 99 0 528 59 0 0 chr13 43261953 43262021 -76482877 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 491 299 87 0 chr13 43262177 43262361 -76482537 - MIR SINE MIR -49 213 14 1906 148 0 0 chr13 43263247 43263545 -76481353 + AluJo SINE Alu 15 312 0 23 0 0 0 chr13 43263846 43263869 -76481029 + AT_rich Low_complexity Low_complexity 1 23 0 1567 181 13 13 chr13 43263869 43264179 -76480719 - AluJo SINE Alu -2 310 1 1377 166 12 0 chr13 43264341 43264594 -76480304 + L1MB3 LINE L1 5921 6176 -7 380 57 0 267 chr13 43264943 43264982 -76479916 + MADE1 DNA Mariner 1 4294967293 -83 1956 135 0 31 chr13 43264982 43265301 -76479597 - AluSq SINE Alu -4 309 1 380 57 0 267 chr13 43265301 43265366 -76479532 + MADE1 DNA Mariner -4 77 -3 1337 96 127 22 chr13 43265377 43265606 -76479292 + L1MB4 LINE L1 5928 6180 0 2385 81 0 0 chr13 43265707 43266015 -76478883 + AluSg SINE Alu 1 308 -2 252 0 0 0 chr13 43266989 43267017 -76477881 + (A)n Simple_repeat Simple_repeat 1 28 0 251 93 23 0 chr13 43267778 43267821 -76477077 + (CA)n Simple_repeat Simple_repeat 2 45 0 263 319 0 0 chr13 43267927 43267996 -76476902 + L3 LINE CR1 1508 1576 -1 23 0 0 0 chr13 43268146 43268169 -76476729 + AT_rich Low_complexity Low_complexity 1 23 0 315 237 35 79 chr13 43268282 43268396 -76476502 + MIR SINE MIR 112 220 -42 674 228 60 102 chr13 43269873 43270211 -76474687 + L1MC4a LINE L1 5521 5843 -1965 2202 95 0 0 chr13 43270211 43270506 -76474392 - AluSg SINE Alu -15 295 1 674 228 60 102 chr13 43270506 43270549 -76474349 + L1MC4a LINE L1 5843 5886 -1922 24 32 0 0 chr13 43270638 43270669 -76474229 + AT_rich Low_complexity Low_complexity 1 31 0 196 313 0 16 chr13 43270964 43271028 -76473870 + L2 LINE L2 3132 3194 -78 263 232 29 43 chr13 43271036 43271105 -76473793 + MIR SINE MIR 89 156 -106 527 268 93 22 chr13 43271110 43271244 -76473654 - MIR SINE MIR -8 254 102 1353 180 33 59 chr13 43271244 43271550 -76473348 - AluJo SINE Alu -12 300 3 527 268 93 22 chr13 43271550 43271598 -76473300 - MIR SINE MIR -160 102 59 183 129 0 0 chr13 43272198 43272229 -76472669 + (GA)n Simple_repeat Simple_repeat 1 31 0 186 367 17 0 chr13 43272342 43272402 -76472496 + MIR SINE MIR 36 96 -112 385 331 55 0 chr13 43272447 43272574 -76472324 + L2 LINE L2 3139 3272 0 421 183 54 11 chr13 43273092 43273185 -76471713 - LTR67 LTR ERVL -3 554 458 371 296 67 79 chr13 43273256 43273496 -76471402 - LTR67 LTR ERVL -318 239 3 2059 119 10 0 chr13 43273644 43273938 -76470960 + AluSx SINE Alu 1 297 -15 475 263 80 62 chr13 43274440 43274484 -76470414 + L1MC4a LINE L1 5621 5663 -2145 4281 190 47 18 chr13 43274484 43275322 -76469576 - MER21B LTR ERV1 -1 862 1 475 263 80 62 chr13 43275322 43275615 -76469283 + L1MC4a LINE L1 5663 5964 -1844 206 96 0 96 chr13 43277930 43277982 -76466916 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 251 193 53 0 chr13 43278302 43278359 -76466539 + L2 LINE L2 3213 3272 0 2100 104 0 13 chr13 43280267 43280576 -76464322 + AluSx SINE Alu 1 305 -7 346 328 40 45 chr13 43281605 43281803 -76463095 - L2 LINE L2 0 3313 3117 784 233 47 55 chr13 43281918 43282193 -76462705 + MER20B DNA MER1_type 219 491 -292 316 237 349 6 chr13 43282941 43283110 -76461788 + MIR SINE MIR 36 262 0 347 269 77 29 chr13 43283284 43283388 -76461510 + L2 LINE L2 3163 3271 -1 21 0 0 0 chr13 43284321 43284342 -76460556 + AT_rich Low_complexity Low_complexity 1 21 0 347 343 184 29 chr13 43284529 43284844 -76460054 - L3 LINE CR1 -70 1507 1144 1203 81 0 6 chr13 43284877 43285038 -76459860 + AluSp SINE Alu 145 304 -9 2024 100 0 7 chr13 43285038 43285329 -76459569 + AluSg SINE Alu 1 289 -21 502 311 16 38 chr13 43285357 43285540 -76459358 - L3 LINE CR1 -508 1069 891 340 279 115 57 chr13 43285524 43285768 -76459130 + L2 LINE L2 3031 3288 -25 * 432 0 0 0 chr13 43285768 43285816 -76459082 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 2427 55 7 3 chr13 43285935 43286245 -76458653 + AluY SINE Alu 1 311 0 256 289 198 37 chr13 43286339 43286526 -76458372 - L3 LINE CR1 -803 774 558 * 375 332 89 61 chr13 43286524 43286916 -76457982 - L2 LINE L2 0 3272 2870 321 294 18 28 chr13 43286997 43287106 -76457792 - L3 LINE CR1 -1141 436 329 2164 101 0 16 chr13 43287323 43287629 -76457269 - AluSc SINE Alu -8 301 1 307 318 63 24 chr13 43289428 43289554 -76455344 + MIR SINE MIR 22 152 -110 1971 114 17 0 chr13 43290169 43290459 -76454439 - AluSx SINE Alu -15 297 3 353 266 0 0 chr13 43291087 43291166 -76453732 + MER117 DNA MER1_type 74 152 -45 366 198 75 19 chr13 43291775 43291881 -76453017 + L1ME4a LINE L1 6009 6120 -1 255 287 0 0 chr13 43292003 43292170 -76452728 + (TG)n Simple_repeat Simple_repeat 2 168 0 572 258 83 68 chr13 43293003 43293255 -76451643 + MIR SINE MIR 7 262 0 336 307 121 30 chr13 43293612 43293843 -76451055 - MIR SINE MIR -8 254 3 1214 307 120 53 chr13 43295179 43295410 -76449488 - L2 LINE L2 -1 3312 3098 731 202 92 6 chr13 43295410 43295583 -76449315 + MER5A DNA MER1_type 2 189 0 1214 307 120 53 chr13 43295583 43295702 -76449196 - L2 LINE L2 -215 3098 2988 2050 93 0 17 chr13 43295702 43295992 -76448906 + AluSc SINE Alu 12 296 -13 1214 307 120 53 chr13 43295992 43297133 -76447765 - L2 LINE L2 -325 2988 1672 2121 80 45 3 chr13 43297912 43298199 -76446699 - AluSc SINE Alu -8 301 3 328 284 81 21 chr13 43298404 43298565 -76446333 - MIR SINE MIR -46 216 45 371 308 136 5 chr13 43298623 43298837 -76446061 - MIR SINE MIR -3 259 18 2460 56 0 0 chr13 43299101 43299403 -76445495 + AluY SINE Alu 1 302 -9 184 194 0 0 chr13 43299997 43300028 -76444870 + L2 LINE L2 3217 3247 -25 278 118 176 81 chr13 43303285 43303421 -76441477 + MER112 DNA MER1_type 35 183 -77 932 170 53 0 chr13 43304715 43304886 -76440012 - MER58A DNA MER1_type -1 223 44 1851 138 0 14 chr13 43304887 43305023 -76439875 + AluSx SINE Alu 1 137 -175 2043 123 7 0 chr13 43305023 43305323 -76439575 + AluSq SINE Alu 1 302 -11 1851 138 0 14 chr13 43305323 43305482 -76439416 + AluSx SINE Alu 137 292 -20 557 173 28 6 chr13 43305482 43305595 -76439303 + MER5A DNA MER1_type 59 185 -4 558 206 290 40 chr13 43305926 43306174 -76438724 - L2 LINE L2 0 3313 3004 359 253 95 32 chr13 43306233 43306391 -76438507 - MLT1J2 LTR MaLR -1 449 282 297 154 39 19 chr13 43307801 43307905 -76436993 + (TCTCTG)n Simple_repeat Simple_repeat 2 107 0 209 277 0 31 chr13 43309056 43309121 -76435777 + CT-rich Low_complexity Low_complexity 3 65 0 255 293 86 17 chr13 43309138 43309254 -76435644 - MIR SINE MIR 0 262 139 345 102 0 0 chr13 43309289 43309348 -76435550 + (CA)n Simple_repeat Simple_repeat 1 59 0 2699 192 31 13 chr13 43310207 43310748 -76434150 + L1MB3 LINE L1 5631 6181 -2 253 279 94 74 chr13 43310531 43310775 -76434123 + L1MA6 LINE L1 5949 6197 -103 845 245 91 65 chr13 43310886 43311258 -76433640 + L2 LINE L2 2930 3311 -2 2202 124 0 3 chr13 43311949 43312247 -76432651 + AluSx SINE Alu 1 297 -15 2149 136 0 7 chr13 43312358 43312667 -76432231 - AluSx SINE Alu -5 307 1 713 292 11 31 chr13 43312809 43313069 -76431829 - MER112 DNA MER1_type 0 260 6 213 297 0 55 chr13 43313124 43313215 -76431683 - L2 LINE L2 -1 3271 3186 306 220 40 80 chr13 43313221 43313371 -76431527 - LTR33 LTR ERVL -7 514 371 342 220 142 21 chr13 43313523 43313664 -76431234 - LTR33 LTR ERVL -356 165 8 187 321 20 59 chr13 43314731 43314997 -76429901 - L3 LINE CR1 -381 1196 901 2162 123 0 3 chr13 43315077 43315370 -76429528 - AluSx SINE Alu -20 292 1 562 191 15 0 chr13 43315589 43315720 -76429178 + GA-rich Low_complexity Low_complexity 1 133 0 186 286 88 11 chr13 43316379 43316470 -76428428 - L2 LINE L2 0 3272 3175 354 248 48 0 chr13 43316965 43317070 -76427828 - MIR SINE MIR -66 196 87 4617 135 36 28 chr13 43317171 43318540 -76426358 + pTR5 LTR ERV1 743 2438 0 1957 125 14 10 chr13 43318843 43319140 -76425758 + AluSq SINE Alu 1 298 -15 319 248 29 19 chr13 43319148 43319253 -76425645 - MIR3 SINE MIR -22 186 81 214 229 266 0 chr13 43319658 43319767 -76425131 - MIR SINE MIR -70 192 55 2305 176 105 23 chr13 43320588 43321023 -76423875 + MLT2B2 LTR ERVL 1 480 -35 939 80 23 17 chr13 43321023 43321198 -76423700 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 2305 176 105 23 chr13 43321198 43321238 -76423660 + MLT2B2 LTR ERVL 480 515 0 356 182 0 0 chr13 43322069 43322135 -76422763 + AluJ/FRAM SINE Alu 227 292 -10 369 275 58 7 chr13 43322301 43322439 -76422459 - L1ME4a LINE L1 -21 6100 5956 319 338 39 0 chr13 43322584 43322738 -76422160 - L1ME4a LINE L1 -391 5730 5571 1584 188 90 37 chr13 43323278 43323735 -76421163 + Charlie4a DNA MER1_type 26 506 -2 261 0 0 0 chr13 43323856 43323885 -76421013 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1723 141 54 30 chr13 43323919 43324216 -76420682 + AluJo SINE Alu 1 304 -8 2059 143 0 0 chr13 43325027 43325320 -76419578 - AluSx SINE Alu -19 293 1 206 156 22 0 chr13 43325522 43325567 -76419331 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 234 257 83 46 chr13 43325624 43325733 -76419165 + MIR3 SINE MIR 47 159 -49 292 320 29 34 chr13 43326968 43327143 -76417755 - MLT1J2 LTR MaLR -34 416 243 285 256 163 3 chr13 43327147 43327272 -76417626 - MLT1J2 LTR MaLR -220 226 76 1969 155 7 0 chr13 43328504 43328808 -76416090 - AluJb SINE Alu -5 307 2 401 36 18 0 chr13 43328843 43328898 -76416000 + (GA)n Simple_repeat Simple_repeat 1 56 0 365 266 208 24 chr13 43329859 43330066 -76414832 + MIR SINE MIR 7 251 -11 296 234 20 164 chr13 43330317 43330518 -76414380 - MER102b DNA MER1_type -7 334 163 1073 244 50 45 chr13 43331021 43331402 -76413496 - MLT1J1 LTR MaLR -61 385 3 645 235 135 41 chr13 43332740 43333048 -76411850 - MLT1J1 LTR MaLR -80 366 29 408 258 11 0 chr13 43333048 43333141 -76411757 - MER81 DNA DNA -3 111 18 225 253 242 21 chr13 43333581 43333676 -76411222 + L2 LINE L2 3156 3271 -1 502 262 94 20 chr13 43333865 43334102 -76410796 + Charlie8 DNA MER1_type 17 285 -2132 361 215 116 25 chr13 43334772 43334893 -76410005 - MIR SINE MIR -80 182 51 186 43 0 0 chr13 43334938 43334961 -76409937 + (CA)n Simple_repeat Simple_repeat 1 23 0 231 323 65 13 chr13 43335028 43335183 -76409715 - MIR3 SINE MIR -26 182 20 227 274 60 24 chr13 43336865 43336949 -76407949 - L3 LINE CR1 -214 1363 1277 249 246 197 16 chr13 43336976 43337098 -76407800 - MIR3 SINE MIR -3 205 62 21 82 0 0 chr13 43338985 43339034 -76405864 + GC_rich Low_complexity Low_complexity 1 49 0 200 329 0 0 chr13 43340708 43340781 -76404117 + C-rich Low_complexity Low_complexity 1 73 0 347 259 15 74 chr13 43342218 43342353 -76402545 - MARNA DNA Mariner -244 342 216 26 30 0 0 chr13 43342423 43342456 -76402442 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 43342754 43342775 -76402123 + AT_rich Low_complexity Low_complexity 1 21 0 368 309 80 6 chr13 43342913 43343075 -76401823 - L1MC/D LINE L1 -2028 5780 5607 290 230 35 11 chr13 43343865 43343952 -76400946 - MER53 DNA DNA 0 189 101 2088 118 10 38 chr13 43344076 43344390 -76400508 + AluSx SINE Alu 4 308 -4 1419 258 156 35 chr13 43344394 43345075 -76399823 + HAL1 LINE L1 1189 1951 -556 564 256 110 23 chr13 43345249 43345550 -76399348 + HAL1 LINE L1 2181 2507 0 4872 214 118 73 chr13 43345593 43346410 -76398488 + L1ME1 LINE L1 390 1169 -5227 2047 113 32 26 chr13 43346410 43346720 -76398178 + AluSx SINE Alu 1 312 0 4872 214 118 73 chr13 43346720 43347343 -76397555 + L1ME1 LINE L1 1169 1763 -4633 642 205 0 33 chr13 43347343 43347465 -76397433 + FLAM_A SINE Alu 1 118 -15 4872 214 118 73 chr13 43347465 43347780 -76397118 + L1ME1 LINE L1 1763 2062 -4334 2275 112 26 0 chr13 43347780 43348084 -76396814 + AluSx SINE Alu 1 312 0 4872 214 118 73 chr13 43348084 43348368 -76396530 + L1ME1 LINE L1 2062 2523 -3873 1199 243 50 17 chr13 43348382 43348909 -76395989 + L1ME1 LINE L1 2853 3777 -2438 3238 207 75 28 chr13 43348924 43348987 -76395911 + L1ME1 LINE L1 4834 4893 -1342 333 0 0 0 chr13 43348987 43349024 -76395874 + (CA)n Simple_repeat Simple_repeat 2 38 0 3238 207 75 28 chr13 43349024 43350224 -76394674 + L1ME1 LINE L1 4893 6173 -62 895 210 27 0 chr13 43350224 43350410 -76394488 + L1PA16 LINE L1 5959 6149 -17 3238 207 75 28 chr13 43350410 43350477 -76394421 + L1ME1 LINE L1 6173 6235 0 668 169 8 0 chr13 43350514 43350644 -76394254 + GA-rich Low_complexity Low_complexity 2 132 0 1069 151 84 9 chr13 43350688 43350913 -76393985 - L1MB2 LINE L1 -2 6169 5928 925 125 0 22 chr13 43350918 43351054 -76393844 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chr13 43351599 43351622 -76393276 + (T)n Simple_repeat Simple_repeat 1 23 0 286 121 318 0 chr13 43351622 43351688 -76393210 - MER31B LTR ERV1 -29 437 351 261 340 60 0 chr13 43352475 43352575 -76392323 - MIR3 SINE MIR -15 193 88 216 0 0 0 chr13 43352663 43352687 -76392211 + (TG)n Simple_repeat Simple_repeat 2 25 0 183 315 27 0 chr13 43356051 43356124 -76388774 - MIR SINE MIR -67 195 121 248 244 13 39 chr13 43357293 43357371 -76387527 - MIR SINE MIR -150 112 37 570 265 24 6 chr13 43358388 43358558 -76386340 - MIR SINE MIR -7 255 83 21 0 0 0 chr13 43358668 43358689 -76386209 + AT_rich Low_complexity Low_complexity 1 21 0 1043 274 56 11 chr13 43358689 43359046 -76385852 - L2 LINE L2 -8 3305 2933 734 145 24 40 chr13 43359813 43359937 -76384961 - LTR12 LTR ERV1 -234 480 359 229 236 28 28 chr13 43359937 43360009 -76384889 - LTR30 LTR ERV1 -98 624 553 2057 58 3 126 chr13 43360010 43360335 -76384563 - LTR12 LTR ERV1 -429 285 1 611 247 161 38 chr13 43360374 43360771 -76384127 + HAL1 LINE L1 910 1355 -1152 189 0 0 0 chr13 43361386 43361407 -76383491 + (A)n Simple_repeat Simple_repeat 1 21 0 262 223 85 90 chr13 43361492 43361680 -76383218 + Tigger1 DNA MER2_type 815 1001 -1417 6933 158 109 62 chr13 43362169 43363845 -76381053 + MER52A LTR ERV1 1 1755 0 244 313 124 51 chr13 43364837 43365054 -76379844 - MIR SINE MIR -10 252 20 187 189 27 0 chr13 43365065 43365102 -76379796 - L2 LINE L2 -15 3298 3261 1518 168 43 13 chr13 43367633 43367936 -76376962 + MLT1F LTR MaLR 229 540 -2 484 234 139 19 chr13 43369191 43369349 -76375549 - MER5B DNA MER1_type 0 178 2 2282 104 0 0 chr13 43369470 43369786 -76375112 + AluSq SINE Alu 1 316 0 191 172 86 52 chr13 43370207 43370265 -76374633 - MER5A DNA MER1_type -5 184 125 1969 171 0 3 chr13 43370266 43370570 -76374328 + AluJb SINE Alu 1 303 -9 208 340 0 0 chr13 43370574 43370627 -76374271 + MER5A DNA MER1_type 65 117 -72 2291 108 3 0 chr13 43370660 43370967 -76373931 + AluSx SINE Alu 1 308 -4 3000 133 21 11 chr13 43370977 43371770 -76373128 + L1PB3 LINE L1 4943 5743 -411 237 65 0 0 chr13 43371771 43371802 -76373096 + (CA)n Simple_repeat Simple_repeat 2 32 0 2313 115 6 3 chr13 43371817 43372155 -76372743 + L1PB3 LINE L1 5807 6145 -9 409 217 373 6 chr13 43372175 43372336 -76372562 - MIR SINE MIR -8 254 35 22 70 0 0 chr13 43374999 43375042 -76369856 + AT_rich Low_complexity Low_complexity 1 43 0 1477 150 113 13 chr13 43375560 43375990 -76368908 + MER44D DNA MER2_type 1 569 -36 209 130 65 43 chr13 43376328 43376374 -76368524 - L2 LINE L2 0 3272 3226 1112 174 57 28 chr13 43376408 43376620 -76368278 + AluJb SINE Alu 20 237 -75 911 158 45 50 chr13 43376728 43376930 -76367968 - THE1B LTR MaLR 0 364 164 36 23 0 0 chr13 43376976 43377019 -76367879 + AT_rich Low_complexity Low_complexity 1 43 0 1964 127 0 0 chr13 43377068 43377344 -76367554 + AluJb SINE Alu 1 276 -36 194 0 39 0 chr13 43377354 43377380 -76367518 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr13 43377461 43377482 -76367416 + (TG)n Simple_repeat Simple_repeat 2 22 0 459 258 37 18 chr13 43378491 43378654 -76366244 + GA-rich Low_complexity Low_complexity 3 168 0 313 243 72 83 chr13 43379142 43379516 -76365382 + L1M4 LINE L1 2931 3300 -2846 262 229 0 82 chr13 43379571 43379693 -76365205 + L1M4 LINE L1 3428 3539 -2607 22 0 0 0 chr13 43380158 43380180 -76364718 + AT_rich Low_complexity Low_complexity 1 22 0 211 341 67 61 chr13 43380180 43380344 -76364554 + L2 LINE L2 2913 3077 -195 2401 76 0 3 chr13 43380364 43380666 -76364232 - AluSg SINE Alu -9 301 1 180 68 45 23 chr13 43380770 43380814 -76364084 + (TAA)n Simple_repeat Simple_repeat 2 46 0 557 267 80 37 chr13 43381044 43381231 -76363667 - MIR SINE MIR -48 214 20 348 152 0 0 chr13 43381620 43381686 -76363212 + (TG)n Simple_repeat Simple_repeat 2 67 0 1379 81 99 14 chr13 43381955 43382166 -76362732 - MER30 DNA MER1_type 0 230 2 398 293 31 63 chr13 43383713 43384031 -76360867 - L2 LINE L2 -1154 2160 1853 226 258 32 16 chr13 43384287 43384349 -76360549 - L2 LINE L2 -1 3271 3209 21 57 0 0 chr13 43384772 43384807 -76360091 + AT_rich Low_complexity Low_complexity 1 35 0 358 262 59 104 chr13 43384857 43384978 -76359920 - MIR SINE MIR -3 259 127 1975 126 0 14 chr13 43384978 43385283 -76359615 + AluSx SINE Alu 1 301 0 358 262 59 104 chr13 43385283 43385392 -76359506 - MIR SINE MIR -135 127 15 346 321 33 10 chr13 43385572 43385749 -76359149 - MIR SINE MIR -1 261 5 2298 52 16 39 chr13 43386105 43386413 -76358485 + AluY SINE Alu 1 301 -10 264 322 92 30 chr13 43387601 43387794 -76357104 + MIR SINE MIR 41 254 -8 387 259 59 28 chr13 43388942 43389197 -76355701 + L1ME3A LINE L1 2202 2464 -3682 569 286 102 34 chr13 43389250 43389691 -76355207 + L1ME3A LINE L1 2558 3028 -3118 273 254 70 75 chr13 43389864 43389939 -76354959 + L1ME3A LINE L1 3621 3695 -2451 2439 92 0 6 chr13 43389939 43390253 -76354645 + AluSx SINE Alu 1 312 0 273 254 70 75 chr13 43390253 43390405 -76354493 + L1ME3A LINE L1 3695 3847 -2299 2080 146 0 3 chr13 43390497 43390798 -76354100 + AluSx SINE Alu 1 300 -12 834 256 200 32 chr13 43390952 43391064 -76353834 + L1ME3A LINE L1 4006 4098 -2048 1152 169 83 51 chr13 43391064 43391377 -76353521 + MER33 DNA MER1_type 1 323 -1 834 256 200 32 chr13 43391377 43392397 -76352501 + L1ME3A LINE L1 4098 5329 -817 851 159 0 28 chr13 43392397 43392542 -76352356 + FLAM_C SINE Alu 1 141 -2 1038 212 38 38 chr13 43392559 43392904 -76351994 + L1ME3A LINE L1 5318 5662 -508 923 273 90 12 chr13 43392910 43393320 -76351578 + L1ME3A LINE L1 5716 6157 -13 364 256 23 87 chr13 43393324 43393469 -76351429 + L1ME3A LINE L1 4981 5134 -1012 2279 84 3 24 chr13 43393469 43393767 -76351131 + AluSp SINE Alu 1 292 -21 364 256 23 87 chr13 43393767 43393789 -76351109 + L1ME3A LINE L1 5134 5156 -990 210 71 0 0 chr13 43393789 43393817 -76351081 + (TA)n Simple_repeat Simple_repeat 2 29 0 364 256 23 87 chr13 43393817 43393867 -76351031 + L1ME3A LINE L1 5156 5185 -961 1162 122 0 6 chr13 43393868 43394032 -76350866 + AluSg/x SINE Alu 132 294 -18 2486 74 0 3 chr13 43394125 43394435 -76350463 + AluY SINE Alu 1 309 -2 616 304 96 26 chr13 43394438 43394962 -76349936 + L1ME3A LINE L1 5255 5855 -315 2067 131 67 3 chr13 43394962 43395306 -76349592 - MER47A DNA MER2_type 0 366 1 616 304 96 26 chr13 43395306 43395411 -76349487 + L1ME3A LINE L1 5855 5951 -219 3452 236 83 59 chr13 43395867 43396802 -76348096 + L1MB5 LINE L1 2 913 -5733 1743 174 0 64 chr13 43396802 43396947 -76347951 + AluJo SINE Alu 1 154 -158 2427 103 0 0 chr13 43396947 43397259 -76347639 + AluSx SINE Alu 1 312 0 1743 174 0 64 chr13 43397259 43397441 -76347457 + AluJo SINE Alu 154 307 -5 3452 236 83 59 chr13 43397441 43398436 -76346462 + L1MB5 LINE L1 913 2158 -4488 3591 173 77 40 chr13 43398520 43399125 -76345773 + L1MB5 LINE L1 5295 5876 -796 1267 170 112 54 chr13 43399125 43399259 -76345639 + AluJo SINE Alu 1 126 -186 2336 102 0 6 chr13 43399259 43399574 -76345324 + AluSq SINE Alu 1 313 0 1267 170 112 54 chr13 43399574 43399715 -76345183 + AluJo SINE Alu 126 292 -20 3591 173 77 40 chr13 43399715 43400416 -76344482 + L1MB5 LINE L1 5876 6671 -1 401 381 42 32 chr13 43400472 43400879 -76344019 + L2 LINE L2 2456 2866 -448 1143 178 5 5 chr13 43400985 43401182 -76343716 + AluJb SINE Alu 112 308 -4 34 24 0 0 chr13 43402244 43402285 -76342613 + AT_rich Low_complexity Low_complexity 1 41 0 2382 93 0 3 chr13 43402663 43402975 -76341923 + AluSq SINE Alu 1 311 -2 2034 128 0 3 chr13 43403551 43403833 -76341065 - AluJo SINE Alu -20 292 12 613 249 26 5 chr13 43405284 43405473 -76339425 - MER105 DNA DNA -9 195 3 516 180 85 138 chr13 43405479 43405668 -76339230 - MIR SINE MIR -82 180 2 30 27 0 0 chr13 43406730 43406767 -76338131 + AT_rich Low_complexity Low_complexity 1 37 0 1960 131 35 0 chr13 43407191 43407481 -76337417 + AluJb SINE Alu 5 304 -8 723 186 8 0 chr13 43408003 43408127 -76336771 + FLAM_C SINE Alu 1 125 -8 1573 179 39 4 chr13 43408140 43408419 -76336479 + AluJb SINE Alu 5 293 -19 265 333 28 9 chr13 43408595 43408703 -76336195 - L2 LINE L2 -5 3308 3199 710 235 150 15 chr13 43408757 43408957 -76335941 - MIR SINE MIR -33 229 3 1962 104 46 3 chr13 43409180 43409487 -76335411 + L1PA11 LINE L1 5834 6153 -21 184 321 89 9 chr13 43409596 43409708 -76335190 - L2 LINE L2 -641 2673 2553 802 298 42 39 chr13 43411354 43411710 -76333188 + L2 LINE L2 2604 2960 -354 579 51 0 226 chr13 43412139 43412213 -76332685 + L1MB3 LINE L1 6066 6097 -86 2290 68 0 4 chr13 43412213 43412494 -76332404 + AluSx SINE Alu 1 280 -32 579 51 0 226 chr13 43412494 43412556 -76332342 + L1MB3 LINE L1 6097 6171 -12 589 236 168 82 chr13 43412825 43412959 -76331939 + L1ME4a LINE L1 5469 5590 -531 2146 91 10 36 chr13 43412959 43413266 -76331632 + AluSp SINE Alu 2 300 -13 589 236 168 82 chr13 43413266 43413443 -76331455 + L1ME4a LINE L1 5590 5750 -371 226 0 0 0 chr13 43413443 43413468 -76331430 + (TTTTG)n Simple_repeat Simple_repeat 3 115 0 1867 135 11 11 chr13 43413468 43413751 -76331147 - AluSx SINE Alu -1 307 1 589 236 168 82 chr13 43413751 43413852 -76331046 + L1ME4a LINE L1 5749 5920 -201 1838 134 21 14 chr13 43413868 43414159 -76330739 + AluJb SINE Alu 9 301 -11 288 0 0 0 chr13 43414476 43414508 -76330390 + (CA)n Simple_repeat Simple_repeat 2 33 0 426 340 93 50 chr13 43414830 43415014 -76329884 + L2 LINE L2 2149 2324 -948 2584 58 0 0 chr13 43415014 43415325 -76329573 - AluY SINE Alu 0 311 1 426 340 93 50 chr13 43415325 43415514 -76329384 + L2 LINE L2 2324 2503 -769 2335 79 24 0 chr13 43415514 43415804 -76329094 - AluSc SINE Alu -12 297 1 426 340 93 50 chr13 43415804 43416107 -76328791 + L2 LINE L2 2503 3186 -86 272 283 93 66 chr13 43416987 43417365 -76327533 + L1MC4a LINE L1 4885 5272 -874 1788 258 40 32 chr13 43417383 43417434 -76327464 + L1MC4a LINE L1 5331 5380 -2428 2037 155 0 0 chr13 43417434 43417743 -76327155 + AluSx SINE Alu 1 309 -3 1788 258 40 32 chr13 43417743 43418284 -76326614 + L1MC4a LINE L1 5380 5928 -1880 1998 138 14 0 chr13 43418302 43418593 -76326305 - AluSx SINE Alu -17 295 1 243 0 0 0 chr13 43420190 43420217 -76324681 + (CA)n Simple_repeat Simple_repeat 2 28 0 937 143 0 0 chr13 43420419 43420552 -76324346 + AluSq/x SINE Alu 1 133 -180 198 103 0 0 chr13 43420582 43420611 -76324287 + (TA)n Simple_repeat Simple_repeat 2 30 0 261 111 0 0 chr13 43420613 43420658 -76324240 + LTR66 LTR ERVL 394 438 -172 288 170 0 0 chr13 43420661 43420714 -76324184 + (TA)n Simple_repeat Simple_repeat 2 54 0 1730 150 37 3 chr13 43420714 43421008 -76323890 - AluJb SINE Alu -8 304 1 262 282 76 53 chr13 43421513 43421644 -76323254 + Charlie7 DNA MER1_type 59 192 -2420 811 335 180 38 chr13 43422349 43423542 -76321356 - L2 LINE L2 -405 2909 1547 185 263 0 0 chr13 43423756 43423794 -76321104 + MIR SINE MIR 217 254 -8 * 668 240 106 6 chr13 43423760 43423939 -76320959 - MIR SINE MIR -35 227 31 627 315 152 6 chr13 43424770 43425390 -76319508 - L2 LINE L2 -15 3298 2543 3022 211 94 8 chr13 43425406 43426500 -76318398 + L1MC2 LINE L1 4846 6028 -316 304 330 139 15 chr13 43426503 43426776 -76318122 - L2 LINE L2 -1392 1922 1616 6268 214 99 87 chr13 43427103 43427399 -76317499 + L1MCb LINE L1 19 310 -6254 1998 119 37 7 chr13 43427399 43427693 -76317205 - AluSq SINE Alu -10 303 1 6268 214 99 87 chr13 43427693 43428175 -76316723 + L1MCb LINE L1 310 785 -5779 1738 156 3 10 chr13 43428175 43428463 -76316435 + AluJo SINE Alu 16 301 -11 6268 214 99 87 chr13 43428463 43428674 -76316224 + L1MCb LINE L1 785 992 -5572 1615 183 3 7 chr13 43428674 43428987 -76315911 + AluJb SINE Alu 1 312 0 6268 214 99 87 chr13 43428987 43429444 -76315454 + L1MCb LINE L1 992 1442 -5122 277 191 176 0 chr13 43429444 43429512 -76315386 - Tigger5 DNA MER2_type 0 2323 2244 * 460 140 514 0 chr13 43429509 43429616 -76315282 - Tigger5 DNA MER2_type -2129 194 33 * 6268 214 99 87 chr13 43429512 43432563 -76312335 + L1MCb LINE L1 1442 4682 -1882 2013 119 14 3 chr13 43432781 43433076 -76311822 + AluSq SINE Alu 1 298 -15 187 254 0 56 chr13 43434431 43434502 -76310396 - L2 LINE L2 -286 2986 2920 1063 346 103 17 chr13 43434608 43435366 -76309532 - L2 LINE L2 -542 2772 1950 707 139 37 19 chr13 43435690 43435798 -76309100 - AluJb SINE Alu -186 126 17 22 0 0 0 chr13 43435871 43435893 -76309005 + AT_rich Low_complexity Low_complexity 1 22 0 258 298 61 75 chr13 43436181 43436356 -76308542 + MIR SINE MIR 16 189 -66 2832 249 123 55 chr13 43436586 43438396 -76306502 + HAL1 LINE L1 23 2054 -453 253 217 0 0 chr13 43438392 43438438 -76306460 + HAL1 LINE L1 735 780 -1727 * 28 0 0 0 chr13 43438446 43438474 -76306424 + AT_rich Low_complexity Low_complexity 1 28 0 804 176 0 0 chr13 43438474 43438593 -76306305 - FLAM_C SINE Alu -24 119 1 533 198 17 113 chr13 43438607 43438784 -76306114 + HAL1 LINE L1 797 956 -1551 715 282 74 9 chr13 43439058 43439274 -76305624 - MIR SINE MIR -30 232 3 532 246 59 27 chr13 43439282 43439469 -76305429 + HAL1 LINE L1 2310 2502 -5 192 289 31 72 chr13 43439515 43439612 -76305286 - L3 LINE CR1 -246 1331 1239 276 335 81 49 chr13 43439839 43440024 -76304874 - L2 LINE L2 -94 3178 2988 2129 132 0 3 chr13 43440145 43440448 -76304450 - AluJb SINE Alu -10 302 1 266 282 77 13 chr13 43441076 43441154 -76303744 - L2 LINE L2 -90 3182 3100 23 0 0 0 chr13 43441268 43441291 -76303607 + AT_rich Low_complexity Low_complexity 1 23 0 234 150 0 0 chr13 43444501 43444541 -76300357 + (TTG)n Simple_repeat Simple_repeat 1 40 0 207 297 0 0 chr13 43445314 43445378 -76299520 + (TGG)n Simple_repeat Simple_repeat 2 65 0 23 0 0 0 chr13 43446513 43446536 -76298362 + GC_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr13 43446659 43446717 -76298181 + GC_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr13 43446779 43446802 -76298096 + GC_rich Low_complexity Low_complexity 1 23 0 200 272 0 39 chr13 43447281 43447384 -76297514 + G-rich Low_complexity Low_complexity 4 102 0 321 26 0 0 chr13 43448973 43449011 -76295887 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 216 0 0 0 chr13 43449421 43449445 -76295453 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2401 91 0 0 chr13 43449842 43450150 -76294748 + AluY SINE Alu 1 308 -3 2242 103 10 0 chr13 43450466 43450767 -76294131 - AluSx SINE Alu -8 304 1 1897 115 0 4 chr13 43451120 43451389 -76293509 + AluSx SINE Alu 34 301 -11 2738 29 0 0 chr13 43451394 43451701 -76293197 + AluY SINE Alu 1 307 -4 2428 84 0 6 chr13 43451775 43452086 -76292812 + AluSp SINE Alu 2 310 -3 342 247 134 0 chr13 43452661 43452758 -76292140 - MIR SINE MIR -65 197 88 24 0 0 0 chr13 43453124 43453148 -76291750 + AT_rich Low_complexity Low_complexity 1 24 0 514 332 78 5 chr13 43453185 43453390 -76291508 - MIR SINE MIR -5 257 38 25 51 0 0 chr13 43453828 43453867 -76291031 + AT_rich Low_complexity Low_complexity 1 39 0 1857 139 0 43 chr13 43453960 43454263 -76290635 + AluJb SINE Alu 1 290 -22 533 213 56 0 chr13 43455753 43455861 -76289037 + MLT1D LTR MaLR 3 116 -389 2022 118 0 0 chr13 43455861 43456133 -76288765 - AluSg SINE Alu -7 303 32 2171 123 0 0 chr13 43456634 43456926 -76287972 + AluSx SINE Alu 1 292 -20 696 203 0 0 chr13 43457016 43457134 -76287764 + FLAM_C SINE Alu 1 118 -15 3409 124 81 48 chr13 43457135 43457725 -76287173 - MER4B LTR ERV1 0 610 1 1878 166 13 3 chr13 43457734 43458041 -76286857 - AluSx SINE Alu -2 310 1 216 135 0 0 chr13 43458058 43458095 -76286803 + (TA)n Simple_repeat Simple_repeat 1 37 0 1635 171 92 43 chr13 43458387 43458714 -76286184 + MER61A LTR ERV1 1 343 0 198 0 0 0 chr13 43458972 43458994 -76285904 + (T)n Simple_repeat Simple_repeat 1 22 0 195 100 0 0 chr13 43459014 43459044 -76285854 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr13 43459363 43459395 -76285503 + AT_rich Low_complexity Low_complexity 1 32 0 1691 135 52 0 chr13 43460337 43460604 -76284294 - AluJb SINE Alu -31 281 1 2437 74 0 0 chr13 43460612 43460921 -76283977 - AluY SINE Alu -1 310 2 1406 137 26 9 chr13 43460940 43461196 -76283702 - AluSx SINE Alu 0 311 52 228 288 15 0 chr13 43461343 43461409 -76283489 + MER52A LTR ERV1 1 67 -1688 206 141 0 94 chr13 43461424 43461488 -76283410 + (CCCCCA)n Simple_repeat Simple_repeat 3 60 0 3785 212 56 71 chr13 43461660 43462838 -76282060 + MER52A LTR ERV1 56 511 -125 366 203 0 0 chr13 43462810 43462884 -76282014 + MER52A LTR ERV1 1682 1755 0 * 2145 135 3 0 chr13 43463338 43463649 -76281249 + AluSq SINE Alu 1 312 -1 640 200 193 0 chr13 43463662 43463802 -76281096 + AluSg/x SINE Alu 135 301 -9 2394 114 41 11 chr13 43463944 43464070 -76280828 - LTR12 LTR ERV1 0 714 375 6180 90 46 0 chr13 43464070 43464860 -76280038 - LTR12 LTR ERV1 0 826 1 2151 120 13 0 chr13 43466390 43466698 -76278200 + AluSx SINE Alu 1 312 0 707 121 0 43 chr13 43466846 43466962 -76277936 + FLAM_A SINE Alu 24 134 -8 1049 214 86 62 chr13 43467522 43467906 -76276992 - LTR1B LTR ERV1 -433 393 1 820 201 85 0 chr13 43467911 43468100 -76276798 - L1MB7 LINE L1 -59 6125 5921 2065 135 3 3 chr13 43468316 43468627 -76276271 - AluSq SINE Alu -2 311 1 1173 141 40 5 chr13 43468713 43468911 -76275987 - AluSx SINE Alu -107 205 1 1234 216 65 129 chr13 43469029 43469136 -76275762 - L1MC4 LINE L1 -30 8012 7900 264 100 0 0 chr13 43469136 43469176 -76275722 + (CA)n Simple_repeat Simple_repeat 2 41 0 1234 216 65 129 chr13 43469176 43469389 -76275509 - L1MC4 LINE L1 -142 7900 7675 559 168 14 154 chr13 43469389 43469532 -76275366 - FLAM_C SINE Alu -8 125 3 1234 216 65 129 chr13 43469532 43469738 -76275160 - L1MC4 LINE L1 -367 7675 7531 2284 99 10 0 chr13 43469738 43470032 -76274866 - AluSg SINE Alu -13 297 1 1234 216 65 129 chr13 43470032 43470146 -76274752 - L1MC4 LINE L1 -511 7531 7411 833 133 0 0 chr13 43470246 43470359 -76274539 + FRAM SINE Alu 1 106 -70 1967 140 0 4 chr13 43470417 43470695 -76274203 - AluJb SINE Alu -27 285 9 258 281 45 0 chr13 43470715 43470804 -76274094 - L1M4 LINE L1 -2368 3778 3686 436 230 127 70 chr13 43470826 43471157 -76273741 - L1M4 LINE L1 -2932 3214 2865 297 318 112 0 chr13 43471180 43471287 -76273611 - MIR SINE MIR -67 141 23 2015 99 31 20 chr13 43472195 43472488 -76272410 - AluSx SINE Alu -16 296 1 846 153 0 15 chr13 43472651 43472782 -76272116 + FLAM_C SINE Alu 1 129 -4 1758 156 3 27 chr13 43472863 43473158 -76271740 - AluSx SINE Alu -24 288 1 1391 156 62 0 chr13 43473229 43473485 -76271413 - MER65A LTR ERV1 0 445 174 1848 175 0 13 chr13 43473537 43473840 -76271058 + AluJo SINE Alu 1 299 -13 2000 138 14 0 chr13 43473840 43474137 -76270761 + AluSg SINE Alu 1 301 -9 293 136 0 0 chr13 43474142 43474186 -76270712 - LTR54 LTR ERV1 -68 442 399 837 129 58 0 chr13 43474204 43474343 -76270555 - MER65B LTR ERV1 -345 186 40 2311 115 0 0 chr13 43474350 43474663 -76270235 - AluSq SINE Alu 0 313 1 207 0 0 0 chr13 43474663 43474686 -76270212 + (T)n Simple_repeat Simple_repeat 1 23 0 231 163 23 0 chr13 43474686 43474729 -76270169 - MER65A LTR ERV1 -401 44 1 339 259 111 69 chr13 43474814 43475218 -76269680 + MLT1L LTR MaLR 168 615 0 1886 281 13 2 chr13 43475302 43475761 -76269137 + LTR16B LTR ERVL 1 464 0 2387 128 67 78 chr13 43475844 43476012 -76268886 - MSTB2 LTR MaLR 0 457 289 2209 93 10 3 chr13 43476012 43476302 -76268596 + AluSg SINE Alu 1 292 -18 2387 128 67 78 chr13 43476302 43476595 -76268303 - MSTB2 LTR MaLR -168 289 1 719 152 0 32 chr13 43476695 43476820 -76268078 - L1PB3 LINE L1 0 6154 6034 1016 228 54 131 chr13 43476921 43477569 -76267329 + MLT1G LTR MaLR 13 590 0 186 281 0 18 chr13 43477569 43477626 -76267272 + L2 LINE L2 676 731 -2583 283 333 0 0 chr13 43477724 43477799 -76267099 + MER91A DNA MER1_type 1 75 -121 2625 35 0 13 chr13 43477810 43478123 -76266775 - AluY SINE Alu -2 309 1 1897 109 7 25 chr13 43478126 43478410 -76266488 - AluSx SINE Alu -14 298 20 2374 91 7 3 chr13 43478521 43478828 -76266070 - AluSp SINE Alu -5 308 1 797 174 8 0 chr13 43478895 43479027 -76265871 + MER3 DNA MER1_type 1 133 -76 1332 192 11 11 chr13 43479030 43479291 -76265607 - AluJo SINE Alu -11 301 41 1764 159 0 54 chr13 43479296 43479611 -76265287 - AluSx SINE Alu -14 298 1 233 167 0 0 chr13 43479611 43479653 -76265245 + MER3 DNA MER1_type 153 194 -15 287 330 29 0 chr13 43480338 43480441 -76264457 + MIR SINE MIR 106 211 -51 866 193 0 0 chr13 43480815 43480965 -76263933 - AluJb SINE Alu -26 286 137 2179 119 10 0 chr13 43480983 43481286 -76263612 - AluSx SINE Alu 0 312 7 609 271 70 80 chr13 43481312 43481550 -76263348 - MLT1L LTR MaLR -81 534 295 234 0 0 0 chr13 43481550 43481576 -76263322 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1901 96 61 0 chr13 43481576 43481837 -76263061 - AluSx SINE Alu -32 280 4 1996 119 0 34 chr13 43481843 43482169 -76262729 - AluSx SINE Alu 0 316 1 609 271 70 80 chr13 43482169 43482319 -76262579 - MLT1L LTR MaLR -324 291 141 2161 113 7 13 chr13 43483549 43483851 -76261047 + AluSx SINE Alu 1 300 -12 2202 116 0 0 chr13 43484855 43485147 -76259751 + AluSq SINE Alu 1 292 -21 1590 157 75 20 chr13 43485456 43485750 -76259148 - AluJo SINE Alu -2 310 1 281 202 53 32 chr13 43485787 43485881 -76259017 + MER34 LTR ERV1 435 530 -12 566 229 114 0 chr13 43485892 43486023 -76258875 - MIR SINE MIR -64 198 53 827 145 0 23 chr13 43486150 43486281 -76258617 - AluJb SINE Alu -101 211 84 2121 121 0 0 chr13 43486671 43486994 -76257904 - AluSx SINE Alu 0 323 1 23 0 0 0 chr13 43487032 43487055 -76257843 + AT_rich Low_complexity Low_complexity 1 23 0 750 243 21 46 chr13 43489113 43489352 -76255546 + LTR16B LTR ERVL 232 464 0 442 313 6 45 chr13 43489509 43489651 -76255247 + MIR SINE MIR 33 168 -94 1829 129 42 14 chr13 43489651 43489937 -76254961 + AluJo SINE Alu 5 298 -14 442 313 6 45 chr13 43489937 43489973 -76254925 + MIR SINE MIR 168 204 -58 25 31 0 0 chr13 43490278 43490310 -76254588 + GC_rich Low_complexity Low_complexity 1 32 0 24 77 0 0 chr13 43490365 43490417 -76254481 + GC_rich Low_complexity Low_complexity 1 52 0 1996 104 26 23 chr13 43490491 43490800 -76254098 + AluSg SINE Alu 1 310 0 228 35 0 0 chr13 43490815 43490844 -76254054 + (GA)n Simple_repeat Simple_repeat 2 30 0 721 183 43 9 chr13 43490907 43491022 -76253876 + FLAM_C SINE Alu 6 124 -19 283 72 26 5 chr13 43491030 43491225 -76253673 + AluSg SINE Alu 1 294 -6 249 182 0 0 chr13 43491315 43491370 -76253528 + (TG)n Simple_repeat Simple_repeat 2 56 0 2558 57 0 0 chr13 43491651 43491949 -76252949 - AluY SINE Alu -13 298 1 1480 142 97 22 chr13 43493031 43493299 -76251599 + AluJo SINE Alu 9 296 -16 4413 75 16 0 chr13 43493754 43494315 -76250583 - L1PA14 LINE L1 0 6161 5592 807 174 0 35 chr13 43495044 43495188 -76249710 + FLAM_C SINE Alu 1 139 -4 504 303 51 67 chr13 43495571 43495755 -76249143 + MIR SINE MIR 3 183 -79 1598 199 0 0 chr13 43495755 43496046 -76248852 + AluJb SINE Alu 1 291 -21 504 303 51 67 chr13 43496046 43496115 -76248783 + MIR SINE MIR 183 252 -10 399 308 50 8 chr13 43496128 43496248 -76248650 - L2 LINE L2 -9 3304 3180 1259 280 93 23 chr13 43496705 43497180 -76247718 + MLT1J LTR MaLR 1 508 -3 315 268 65 59 chr13 43497554 43497707 -76247191 - L2 LINE L2 -1 3312 3159 24 0 0 0 chr13 43497707 43497731 -76247167 + AT_rich Low_complexity Low_complexity 1 24 0 294 194 0 0 chr13 43497772 43497844 -76247054 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 2084 137 0 0 chr13 43497949 43498241 -76246657 + AluSx SINE Alu 1 292 -20 1277 242 104 103 chr13 43498241 43498556 -76246342 + L1MEc LINE L1 1030 1343 -5053 2062 164 0 0 chr13 43498556 43498866 -76246032 + AluSq SINE Alu 1 310 -3 1277 242 104 103 chr13 43498866 43499069 -76245829 + L1MEc LINE L1 1343 1544 -4852 2198 141 0 0 chr13 43499069 43499381 -76245517 + AluSx SINE Alu 1 312 0 1675 101 0 0 chr13 43499389 43499596 -76245302 + AluSq SINE Alu 1 207 -106 293 176 0 0 chr13 43499596 43499647 -76245251 + AluSq SINE Alu 250 300 0 1277 242 104 103 chr13 43499647 43500050 -76244848 + L1MEc LINE L1 1550 1951 -4445 1739 178 0 17 chr13 43500050 43500348 -76244550 + AluJo SINE Alu 1 293 -19 1920 174 3 0 chr13 43500353 43500658 -76244240 - AluJb SINE Alu -6 306 1 1277 242 104 103 chr13 43500658 43500751 -76244147 + L1MEc LINE L1 1954 2045 -4351 626 268 0 0 chr13 43500751 43500878 -76244020 - FLAM_A SINE Alu -6 127 1 1277 242 104 103 chr13 43500878 43501172 -76243726 + L1MEc LINE L1 2045 2409 -3987 2419 84 0 10 chr13 43501199 43501508 -76243390 + AluSp SINE Alu 1 306 -7 2089 125 4 0 chr13 43502071 43502351 -76242547 - AluSg SINE Alu -29 281 1 1730 173 0 33 chr13 43502455 43502761 -76242137 + AluJo SINE Alu 1 296 -16 2210 113 7 3 chr13 43502838 43503140 -76241758 - AluSx SINE Alu -9 303 1 2236 121 3 0 chr13 43503350 43503656 -76241242 - AluSq SINE Alu -6 307 1 1202 155 9 161 chr13 43503688 43503864 -76241034 - AluJo SINE Alu -6 296 197 1943 164 3 10 chr13 43503864 43504176 -76240722 - AluSx SINE Alu -2 310 1 1202 155 9 161 chr13 43504176 43504347 -76240551 - AluJo SINE Alu -105 197 2 2200 95 3 7 chr13 43504491 43504804 -76240094 + AluSp SINE Alu 1 312 0 429 193 158 9 chr13 43505013 43505127 -76239771 - MLT1L LTR MaLR -343 272 142 2182 114 0 3 chr13 43505312 43505609 -76239289 - AluSx SINE Alu -16 296 1 21 0 0 0 chr13 43505669 43505690 -76239208 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr13 43506127 43506167 -76238731 + AT_rich Low_complexity Low_complexity 1 40 0 2264 121 0 0 chr13 43506187 43506485 -76238413 + AluSx SINE Alu 1 298 -14 33 80 0 0 chr13 43506553 43506628 -76238270 + AT_rich Low_complexity Low_complexity 1 75 0 2447 74 0 7 chr13 43506632 43506930 -76237968 + AluSp SINE Alu 1 296 -17 940 160 0 0 chr13 43508210 43508341 -76236557 - FLAM_C SINE Alu -1 132 2 217 260 81 116 chr13 43510276 43510449 -76234449 - MIR SINE MIR -21 241 75 2599 228 88 139 chr13 43510534 43510675 -76234223 - HAL1 LINE L1 0 2507 2360 2143 129 0 3 chr13 43510675 43510985 -76233913 + AluSx SINE Alu 1 309 -3 2599 228 88 139 chr13 43510985 43511190 -76233708 - HAL1 LINE L1 -147 2360 2146 1843 147 13 33 chr13 43511190 43511490 -76233408 + AluJo SINE Alu 1 294 -18 2599 228 88 139 chr13 43511490 43511638 -76233260 - HAL1 LINE L1 -361 2146 1992 2405 72 23 0 chr13 43511638 43511944 -76232954 - AluSp SINE Alu 0 313 1 2599 228 88 139 chr13 43511944 43512187 -76232711 - HAL1 LINE L1 -515 1992 1738 2344 110 0 3 chr13 43512187 43512496 -76232402 - AluSq SINE Alu -5 308 1 2599 228 88 139 chr13 43512496 43512644 -76232254 - HAL1 LINE L1 -769 1738 1584 832 120 0 93 chr13 43512644 43512794 -76232104 - FLAM_C SINE Alu 0 143 8 2599 228 88 139 chr13 43512794 43513641 -76231257 - HAL1 LINE L1 -923 1584 718 2584 148 4 60 chr13 43513653 43514132 -76230766 + MLT2C2 LTR ERVL 11 462 -2 1574 168 0 11 chr13 43514189 43514463 -76230435 - AluSx SINE Alu 0 312 42 1031 293 114 13 chr13 43514862 43515258 -76229640 + HAL1 LINE L1 3 438 -2069 1182 171 89 26 chr13 43515281 43515461 -76229437 + MSTA LTR MaLR 3 207 -221 2444 46 20 7 chr13 43515461 43515763 -76229135 + AluY SINE Alu 1 306 -5 1182 171 89 26 chr13 43515763 43515851 -76229047 + MSTA LTR MaLR 207 288 -140 608 125 19 29 chr13 43516004 43516108 -76228790 - U13 snRNA snRNA -1 103 1 2053 156 3 3 chr13 43516110 43516417 -76228481 - AluJb SINE Alu -5 307 1 1629 192 72 47 chr13 43516497 43516536 -76228362 + MSTD LTR MaLR 1 38 -358 1892 143 4 0 chr13 43516536 43516847 -76228051 - AluSg SINE Alu 0 312 1 1629 192 72 47 chr13 43516847 43517192 -76227706 + MSTD LTR MaLR 38 396 0 5072 240 82 67 chr13 43517194 43518892 -76226006 + MSTD-int LTR MaLR 2 1726 -9 238 111 111 0 chr13 43518900 43518945 -76225953 + MSTD LTR MaLR 1 50 -378 2382 76 0 7 chr13 43518949 43519250 -76225648 + AluY SINE Alu 1 299 -12 2303 195 97 17 chr13 43519383 43520474 -76224424 + L1MC2 LINE L1 4457 5631 -713 1302 168 76 8 chr13 43520479 43520785 -76224113 + L1MC2 LINE L1 6009 7994 -1 360 332 98 10 chr13 43520874 43521079 -76223819 + MIR SINE MIR 40 262 0 399 269 133 84 chr13 43521839 43521972 -76222926 + L3 LINE CR1 1003 1128 -449 2273 69 3 3 chr13 43521972 43522262 -76222636 - AluY SINE Alu -21 290 1 399 269 133 84 chr13 43522262 43522451 -76222447 + L3 LINE CR1 1128 1341 -236 188 397 50 0 chr13 43522470 43522611 -76222287 + MIR3 SINE MIR 33 180 -28 1995 141 13 10 chr13 43522668 43522972 -76221926 + AluSx SINE Alu 1 305 -7 1738 126 4 4 chr13 43523019 43523273 -76221625 + AluSx SINE Alu 29 282 -30 198 0 0 0 chr13 43523276 43523298 -76221600 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1567 170 85 7 chr13 43523455 43523737 -76221161 + AluJb SINE Alu 1 304 -8 579 196 233 0 chr13 43523738 43523871 -76221027 + AluJo/FRAM SINE Alu 139 302 0 215 31 31 0 chr13 43525106 43525138 -76219760 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 336 24 0 0 chr13 43526416 43526457 -76218441 + (A)n Simple_repeat Simple_repeat 1 41 0 345 24 0 0 chr13 43526848 43526890 -76218008 + (A)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 43527706 43527727 -76217171 + AT_rich Low_complexity Low_complexity 1 21 0 239 224 0 52 chr13 43533568 43533626 -76211272 + L2 LINE L2 3203 3257 -15 2145 127 0 3 chr13 43533754 43534061 -76210837 + AluSx SINE Alu 1 306 -6 31 26 0 0 chr13 43534464 43534502 -76210396 + AT_rich Low_complexity Low_complexity 1 38 0 2131 109 10 3 chr13 43534998 43535300 -76209598 + AluSx SINE Alu 1 304 -8 2345 111 0 0 chr13 43535639 43535946 -76208952 + AluSx SINE Alu 1 307 -5 1858 204 154 9 chr13 43536129 43536687 -76208211 + L1MC4a LINE L1 7121 7759 -49 261 119 0 0 chr13 43536694 43536736 -76208162 + (TG)n Simple_repeat Simple_repeat 2 43 0 1422 203 41 0 chr13 43536740 43537006 -76207892 - AluJb SINE Alu -35 277 1 232 96 19 39 chr13 43537008 43537060 -76207838 + L1MC4 LINE L1 7991 8041 -1 922 197 0 0 chr13 43537740 43537892 -76207006 - FAM SINE Alu -27 158 7 672 284 46 5 chr13 43537895 43538089 -76206809 - MIR SINE MIR -28 234 33 993 73 0 0 chr13 43538179 43538303 -76206595 + AluSq/x SINE Alu 1 124 -189 408 115 16 0 chr13 43538305 43538366 -76206532 + AluS SINE Alu 229 290 -19 23 0 0 0 chr13 43539149 43539172 -76205726 + AT_rich Low_complexity Low_complexity 1 23 0 1879 154 26 7 chr13 43539435 43539741 -76205157 + AluJb SINE Alu 1 312 0 2367 101 3 13 chr13 43540245 43540561 -76204337 + AluSq SINE Alu 1 313 0 1104 171 22 40 chr13 43540687 43540739 -76204159 + AluJb SINE Alu 82 133 -179 1380 188 0 96 chr13 43540739 43541063 -76203835 + AluJb SINE Alu 1 293 -19 1104 171 22 40 chr13 43541063 43541232 -76203666 + AluJb SINE Alu 133 299 -13 279 0 0 0 chr13 43541255 43541286 -76203612 + (TG)n Simple_repeat Simple_repeat 1 31 0 396 0 0 0 chr13 43541334 43541378 -76203520 + (TG)n Simple_repeat Simple_repeat 2 45 0 2009 123 3 11 chr13 43541379 43541664 -76203234 - AluSx SINE Alu -29 283 1 855 216 0 12 chr13 43541698 43541865 -76203033 + FRAM SINE Alu 1 165 -1 2312 67 0 0 chr13 43542650 43542955 -76201943 + AluY SINE Alu 1 305 0 441 200 152 36 chr13 43543744 43543909 -76200989 + MER105 DNA DNA 21 204 0 371 337 58 0 chr13 43544066 43544238 -76200660 - MIR SINE MIR -34 228 47 222 329 82 12 chr13 43544451 43544536 -76200362 + L2 LINE L2 3178 3268 -4 216 0 0 0 chr13 43544573 43544597 -76200301 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr13 43544652 43544687 -76200211 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 43545055 43545078 -76199820 + AT_rich Low_complexity Low_complexity 1 23 0 1800 148 11 0 chr13 43545269 43545582 -76199316 + AluSx SINE Alu 1 316 0 2012 129 7 7 chr13 43546206 43546501 -76198397 + AluSg SINE Alu 1 295 -15 1785 139 0 0 chr13 43546526 43546770 -76198128 + AluSx SINE Alu 1 244 -68 2401 82 3 13 chr13 43546804 43547120 -76197778 + AluSp SINE Alu 1 313 0 2218 97 0 0 chr13 43547123 43547421 -76197477 + AluSc SINE Alu 1 298 0 212 280 108 54 chr13 43548136 43548229 -76196669 + MIR SINE MIR 14 111 -151 2248 122 0 0 chr13 43548400 43548703 -76196195 + AluSx SINE Alu 1 303 -9 817 197 40 0 chr13 43549473 43549625 -76195273 - FRAM SINE Alu -8 158 1 2178 126 0 3 chr13 43549632 43549934 -76194964 - AluSx SINE Alu -11 301 1 949 112 0 22 chr13 43550090 43550224 -76194674 + AluJb SINE Alu 1 131 -181 189 326 0 22 chr13 43552110 43552199 -76192699 - L2 LINE L2 -1405 1909 1823 422 198 113 19 chr13 43552717 43552823 -76192075 - MIR SINE MIR -83 179 64 198 132 0 26 chr13 43552814 43552852 -76192046 + L2 LINE L2 3276 3312 -1 * 260 312 32 48 chr13 43553468 43553514 -76191384 + L2 LINE L2 3149 3194 -78 2207 114 0 22 chr13 43553514 43553550 -76191348 - AluSx SINE Alu 0 312 277 216 0 0 0 chr13 43553550 43553574 -76191324 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2207 114 0 22 chr13 43553574 43553852 -76191046 - AluSx SINE Alu -35 277 5 260 312 32 48 chr13 43553852 43553930 -76190968 + L2 LINE L2 3194 3271 -1 348 83 0 0 chr13 43554649 43554697 -76190201 + (TA)n Simple_repeat Simple_repeat 2 49 0 1498 171 3 70 chr13 43554738 43555036 -76189862 - AluJo SINE Alu -30 282 5 2131 143 0 3 chr13 43555113 43555421 -76189477 - AluSg SINE Alu -3 307 1 2539 57 0 0 chr13 43555557 43555856 -76189042 + AluY SINE Alu 1 299 -12 2227 67 0 3 chr13 43556053 43556375 -76188523 + AluY SINE Alu 1 321 0 2250 93 7 7 chr13 43557460 43557761 -76187137 + AluSg SINE Alu 1 301 -9 691 265 263 25 chr13 43557817 43558289 -76186609 + MLT1K LTR MaLR 2 585 -3 1299 186 27 0 chr13 43558362 43558630 -76186268 + AluJb SINE Alu 86 359 0 201 191 24 0 chr13 43558696 43558738 -76186160 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr13 43558859 43558880 -76186018 + AT_rich Low_complexity Low_complexity 1 21 0 244 261 70 84 chr13 43558883 43559098 -76185800 - L1MC4 LINE L1 -372 7670 7459 451 233 27 34 chr13 43559103 43559249 -76185649 - L1MC4 LINE L1 -1891 5917 5773 747 263 27 6 chr13 43559270 43559528 -76185370 - L1ME4a LINE L1 -278 5843 5572 30 0 0 0 chr13 43559573 43559603 -76185295 + AT_rich Low_complexity Low_complexity 1 30 0 234 105 0 0 chr13 43559705 43559743 -76185155 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 369 0 0 0 chr13 43560038 43560079 -76184819 + (CA)n Simple_repeat Simple_repeat 2 42 0 210 37 0 0 chr13 43560222 43560249 -76184649 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1678 175 7 21 chr13 43560252 43560538 -76184360 - AluJo SINE Alu -30 282 1 391 276 60 37 chr13 43560979 43561330 -76183568 + MLT1K LTR MaLR 228 586 -2 306 270 88 46 chr13 43561539 43561977 -76182921 + LTR33 LTR ERVL 24 508 -13 232 274 47 66 chr13 43562521 43562627 -76182271 + L2 LINE L2 3137 3240 -32 2124 169 54 41 chr13 43562862 43563323 -76181575 + MLT1C LTR MaLR 1 467 0 543 230 66 20 chr13 43563412 43563564 -76181334 + MIR SINE MIR 94 252 -10 314 306 35 0 chr13 43563579 43563664 -76181234 - MIR SINE MIR -57 151 64 2354 82 0 7 chr13 43563956 43564261 -76180637 + AluSc SINE Alu 3 305 -4 203 86 0 29 chr13 43565202 43565237 -76179661 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr13 43565777 43565800 -76179098 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1964 160 3 0 chr13 43565805 43566111 -76178787 - AluSx SINE Alu -5 307 1 848 134 0 22 chr13 43566609 43566743 -76178155 - FLAM_C SINE Alu -2 131 1 2020 139 3 3 chr13 43567061 43567355 -76177543 + AluSx SINE Alu 2 295 -17 182 61 0 30 chr13 43567355 43567388 -76177510 + (TA)n Simple_repeat Simple_repeat 2 33 0 936 160 0 0 chr13 43567394 43567544 -76177354 + AluJb SINE Alu 143 292 -20 1519 185 11 0 chr13 43567548 43567808 -76177090 - AluJo SINE Alu -49 263 1 406 224 191 7 chr13 43568059 43568206 -76176692 + MER5A DNA MER1_type 9 182 -7 43 0 0 0 chr13 43568652 43568695 -76176203 + AT_rich Low_complexity Low_complexity 1 43 0 225 269 15 0 chr13 43570403 43570470 -76174428 + Tigger7 DNA MER2_type 1774 1841 -646 247 261 205 4 chr13 43571024 43571202 -76173696 - MIR SINE MIR -54 208 3 2624 105 8 6 chr13 43571555 43571917 -76172981 - THE1B LTR MaLR 0 364 2 2233 111 3 3 chr13 43572662 43572969 -76171929 + AluSc SINE Alu 1 307 -2 2142 138 0 0 chr13 43573019 43573331 -76171567 - AluSx SINE Alu 0 312 1 22 0 0 0 chr13 43573513 43573535 -76171363 + AT_rich Low_complexity Low_complexity 1 22 0 364 343 92 18 chr13 43573565 43573848 -76171050 + L3 LINE CR1 1193 1496 -81 2079 123 3 7 chr13 43574576 43574878 -76170020 - AluSx SINE Alu -11 301 1 1933 170 0 0 chr13 43575125 43575414 -76169484 - AluJo SINE Alu -23 289 1 2336 99 3 0 chr13 43575479 43575781 -76169117 - AluSp SINE Alu -10 303 1 1797 155 3 23 chr13 43576220 43576529 -76168369 + AluJo SINE Alu 1 303 -9 2173 114 0 3 chr13 43576979 43577268 -76167630 + AluSg SINE Alu 1 288 -22 225 269 15 0 chr13 43577491 43577558 -76167340 + Tigger7 DNA MER2_type 1774 1841 -646 247 261 205 4 chr13 43578110 43578288 -76166610 - MIR SINE MIR -54 208 3 2624 105 8 6 chr13 43578641 43579003 -76165895 - THE1B LTR MaLR 0 364 2 2229 104 3 3 chr13 43579748 43580045 -76164853 + AluSc SINE Alu 1 297 -12 306 0 0 0 chr13 43580690 43580724 -76164174 + (CA)n Simple_repeat Simple_repeat 2 35 0 240 86 0 0 chr13 43581209 43581244 -76163654 + (T)n Simple_repeat Simple_repeat 1 35 0 503 226 94 31 chr13 43582369 43582528 -76162370 - MIR SINE MIR -48 214 46 328 308 0 0 chr13 43582611 43582702 -76162196 - L2 LINE L2 -4 3309 3219 2036 164 49 49 chr13 43582874 43583060 -76161838 + MSTB LTR MaLR 1 186 -240 2185 127 0 0 chr13 43583060 43583351 -76161547 + AluSx SINE Alu 1 291 -21 2036 164 49 49 chr13 43583351 43583590 -76161308 + MSTB LTR MaLR 185 426 0 660 245 31 20 chr13 43584110 43584306 -76160592 + L1MC5 LINE L1 7710 7907 -54 2233 126 7 0 chr13 43584311 43584621 -76160277 + AluSx SINE Alu 1 312 0 2076 134 13 0 chr13 43586503 43586801 -76158097 + AluSx SINE Alu 1 302 -10 2584 40 3 0 chr13 43586801 43587100 -76157798 + AluY SINE Alu 1 301 -10 2174 112 10 0 chr13 43588598 43588893 -76156005 - AluSp SINE Alu -15 298 1 4723 254 73 42 chr13 43589015 43589986 -76154912 + L1MEc LINE L1 34 973 -5423 2391 71 3 7 chr13 43589986 43590281 -76154617 - AluSp SINE Alu -19 294 1 4723 254 73 42 chr13 43590281 43590900 -76153998 + L1MEc LINE L1 973 1571 -4825 1987 148 0 0 chr13 43590900 43591178 -76153720 + AluSg SINE Alu 2 279 -31 315 0 0 0 chr13 43591181 43591216 -76153682 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4723 254 73 42 chr13 43591216 43591578 -76153320 + L1MEc LINE L1 1572 2053 -4343 246 278 79 56 chr13 43592415 43592541 -76152357 + MIR3 SINE MIR 4 132 -76 28 71 0 0 chr13 43592594 43592650 -76152248 + AT_rich Low_complexity Low_complexity 1 56 0 1112 166 9 74 chr13 43592743 43592801 -76152097 + MER46A DNA MER2_type 1 61 -2670 634 159 106 0 chr13 43592801 43592914 -76151984 - FLAM_A SINE Alu -8 125 1 1112 166 9 74 chr13 43592914 43593084 -76151814 + MER46A DNA MER2_type 61 214 -22 2259 105 0 0 chr13 43593104 43593390 -76151508 - AluSq SINE Alu -23 290 5 191 308 0 0 chr13 43593410 43593462 -76151436 + L2 LINE L2 3216 3267 -5 348 83 0 0 chr13 43594187 43594235 -76150663 + (TA)n Simple_repeat Simple_repeat 2 49 0 1490 171 3 70 chr13 43594276 43594574 -76150324 - AluJo SINE Alu -30 282 5 2125 143 0 3 chr13 43594651 43594959 -76149939 - AluSg SINE Alu -3 307 1 2579 57 0 0 chr13 43595095 43595394 -76149504 + AluY SINE Alu 1 299 -12 2279 67 0 3 chr13 43595591 43595913 -76148985 + AluY SINE Alu 1 321 0 341 237 10 31 chr13 43596749 43596846 -76148052 + MER69 DNA AcHobo 2096 2190 -336 868 128 0 30 chr13 43597582 43597715 -76147183 - FLAM_C SINE Alu -3 130 2 294 298 18 61 chr13 43597856 43598083 -76146815 + MLT1L LTR MaLR 107 317 -194 436 255 0 28 chr13 43598797 43598903 -76145995 + MER5A DNA MER1_type 4 106 -83 306 0 0 0 chr13 43599852 43599886 -76145012 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2202 122 0 0 chr13 43599888 43600182 -76144716 - AluSx SINE Alu -18 294 1 2385 107 22 25 chr13 43600730 43601095 -76143803 + THE1B LTR MaLR 1 364 0 2327 99 0 0 chr13 43601873 43602166 -76142732 + AluSc SINE Alu 1 293 -16 10485 22 3 184 chr13 43602253 43602306 -76142592 - SVA Other Other 0 1386 1325 234 0 0 0 chr13 43602306 43602332 -76142566 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 10485 22 3 184 chr13 43602332 43603989 -76140909 - SVA Other Other -61 1325 3 22 0 0 0 chr13 43603989 43604011 -76140887 + GC_rich Low_complexity Low_complexity 1 22 0 476 314 20 25 chr13 43604011 43604253 -76140645 + CT-rich Low_complexity Low_complexity 1 240 0 257 409 0 8 chr13 43604197 43604329 -76140569 + C-rich Low_complexity Low_complexity 3 133 0 * 2064 130 17 3 chr13 43604642 43604934 -76139964 + AluSx SINE Alu 1 296 -16 3194 128 23 54 chr13 43604935 43605543 -76139355 + L1MA7 LINE L1 5701 6289 -2 235 268 179 0 chr13 43605577 43605700 -76139198 - MIR3 SINE MIR -28 180 36 288 95 24 0 chr13 43606678 43606720 -76138178 + MER75 DNA T2_type 462 504 0 1541 253 104 41 chr13 43606736 43606878 -76138020 + L2 LINE L2 2046 2178 -1136 2350 154 48 17 chr13 43606878 43607294 -76137604 - MSTB1 LTR MaLR -2 430 2 1541 253 104 41 chr13 43607294 43607959 -76136939 + L2 LINE L2 2178 2904 -410 431 143 78 0 chr13 43607966 43608043 -76136855 - Charlie4a DNA MER1_type -2 506 424 2035 141 0 6 chr13 43608043 43608356 -76136542 - AluSx SINE Alu -1 311 1 2047 141 0 0 chr13 43608399 43608683 -76136215 - AluSx SINE Alu -25 287 4 291 100 186 0 chr13 43608690 43608760 -76136138 - Charlie4a DNA MER1_type -75 433 351 1885 203 12 15 chr13 43608777 43609186 -76135712 - Charlie4a DNA MER1_type -100 408 1 636 298 114 27 chr13 43609189 43609565 -76135333 + L2 LINE L2 2905 3313 0 23 33 0 0 chr13 43609676 43609706 -76135192 + AT_rich Low_complexity Low_complexity 1 30 0 223 303 62 21 chr13 43610053 43610198 -76134700 - L2 LINE L2 -955 2359 2209 2116 166 63 96 chr13 43611628 43611998 -76132900 + MER69 DNA AcHobo 1932 2312 -214 2480 95 0 0 chr13 43611998 43612302 -76132596 + AluSx SINE Alu 1 304 -8 2116 166 63 96 chr13 43612302 43612488 -76132410 + MER69 DNA AcHobo 2312 2470 -56 1958 145 3 0 chr13 43612488 43612793 -76132105 + AluSx SINE Alu 1 306 0 2116 166 63 96 chr13 43612793 43612849 -76132049 + MER69 DNA AcHobo 2470 2526 0 258 205 246 57 chr13 43613688 43613810 -76131088 + MIR3 SINE MIR 38 182 -26 282 247 55 0 chr13 43614109 43614182 -76130716 - MER91C DNA MER1_type -62 78 2 2415 95 3 0 chr13 43614763 43615068 -76129830 + AluSx SINE Alu 7 312 0 427 252 17 17 chr13 43615362 43615481 -76129417 + MER5B DNA MER1_type 1 119 -59 650 237 7 0 chr13 43615622 43615761 -76129137 + MER5B DNA MER1_type 39 178 0 1911 148 0 29 chr13 43616091 43616401 -76128497 + AluSx SINE Alu 1 301 -11 2127 102 3 3 chr13 43617378 43617750 -76127148 + AluSq SINE Alu 1 372 0 207 0 0 0 chr13 43617898 43617921 -76126977 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2072 119 14 3 chr13 43618457 43618743 -76126155 - AluSq SINE Alu -24 289 1 190 274 60 12 chr13 43619744 43619828 -76125070 - MIR3 SINE MIR -16 192 105 2194 102 34 0 chr13 43620417 43620710 -76124188 + AluY SINE Alu 3 305 -6 1133 153 0 11 chr13 43620713 43620903 -76123995 + AluSx SINE Alu 1 188 -124 577 95 36 0 chr13 43621007 43621122 -76123776 + AluSx SINE Alu 195 312 0 341 263 10 10 chr13 43621900 43621999 -76122899 - MIR3 SINE MIR -5 203 105 188 286 76 59 chr13 43622113 43622232 -76122666 + L3b LINE CR1 1179 1299 -284 2167 132 0 7 chr13 43622783 43623093 -76121805 + AluSq SINE Alu 1 308 -5 253 143 40 24 chr13 43623137 43623263 -76121635 + (TA)n Simple_repeat Simple_repeat 1 128 0 259 256 64 0 chr13 43623420 43623498 -76121400 - L1ME LINE L1 -329 5792 5710 358 129 0 0 chr13 43623781 43623843 -76121055 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 764 142 41 0 chr13 43623849 43624018 -76120880 + CT-rich Low_complexity Low_complexity 1 176 0 247 65 0 0 chr13 43624022 43624053 -76120845 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr13 43624053 43624076 -76120822 + (TC)n Simple_repeat Simple_repeat 1 23 0 1508 207 26 26 chr13 43624076 43624258 -76120640 - AluJb SINE Alu -7 305 121 549 0 0 0 chr13 43624258 43624319 -76120579 + (TG)n Simple_repeat Simple_repeat 2 62 0 1508 207 26 26 chr13 43624319 43624440 -76120458 - AluJb SINE Alu -190 122 2 1721 146 27 4 chr13 43625174 43625466 -76119432 - AluJb SINE Alu 0 313 16 1650 99 47 0 chr13 43625583 43625815 -76119083 + AluSx SINE Alu 62 304 -8 1179 146 41 55 chr13 43625815 43626035 -76118863 - MER4E LTR ERV1 -186 593 377 1033 84 156 0 chr13 43626137 43626291 -76118607 - MER4E LTR ERV1 -601 178 1 181 283 33 17 chr13 43626684 43626744 -76118154 - MIR SINE MIR -51 211 151 205 163 61 0 chr13 43626745 43626794 -76118104 - L2 LINE L2 0 3313 3262 1057 78 0 0 chr13 43626820 43626949 -76117949 + AluSq/x SINE Alu 1 129 -184 6292 222 123 49 chr13 43627128 43627347 -76117551 - L1MC3 LINE L1 0 7785 7584 2291 117 10 0 chr13 43627347 43627656 -76117242 - AluSx SINE Alu 0 312 1 6292 222 123 49 chr13 43627656 43628097 -76116801 - L1MC3 LINE L1 -201 7584 7177 2519 55 6 13 chr13 43628097 43628408 -76116490 - AluY SINE Alu -2 309 1 6292 222 123 49 chr13 43628408 43628848 -76116050 - L1MC3 LINE L1 -608 7177 6771 1089 200 9 14 chr13 43628848 43629068 -76115830 + MER20 DNA MER1_type 1 219 0 6292 222 123 49 chr13 43629068 43629384 -76115514 - L1MC3 LINE L1 -1014 6771 6480 2290 113 0 3 chr13 43629384 43629693 -76115205 + AluSx SINE Alu 1 308 -4 6292 222 123 49 chr13 43629693 43630586 -76114312 - L1MC3 LINE L1 -1305 6480 5298 2193 107 33 3 chr13 43630837 43631167 -76113731 + AluSc SINE Alu 1 339 0 2143 97 3 48 chr13 43631314 43631624 -76113274 + AluSg SINE Alu 1 296 -14 282 221 104 0 chr13 43631917 43631994 -76112904 - MIR SINE MIR -55 207 123 2098 138 0 3 chr13 43632274 43632571 -76112327 - AluJo SINE Alu -16 296 1 556 190 33 43 chr13 43632609 43632793 -76112105 - Charlie7 DNA MER1_type 0 2612 2431 989 302 78 44 chr13 43632842 43633256 -76111642 - Charlie7 DNA MER1_type -2062 550 112 1931 110 18 14 chr13 43633256 43633568 -76111330 - AluSq SINE Alu 0 313 1 989 302 78 44 chr13 43633568 43633678 -76111220 - Charlie7 DNA MER1_type -2500 112 7 2575 116 29 60 chr13 43633678 43633868 -76111030 + Tigger2a DNA MER2_type 1 195 -2513 1900 139 13 10 chr13 43633868 43634169 -76110729 + AluJb SINE Alu 1 302 -10 2575 116 29 60 chr13 43634169 43634255 -76110643 + Tigger2a DNA MER2_type 195 282 -2426 2405 84 7 0 chr13 43634255 43634554 -76110344 + AluSp SINE Alu 1 301 -12 2575 116 29 60 chr13 43634554 43634723 -76110175 + Tigger2a DNA MER2_type 282 433 -1 1418 77 0 0 chr13 43635544 43635725 -76109173 + AluY SINE Alu 131 311 0 1900 126 18 0 chr13 43635784 43636101 -76108797 - AluSx SINE Alu 0 324 3 2109 125 0 0 chr13 43637300 43637587 -76107311 - AluSg SINE Alu -23 287 1 1779 179 0 22 chr13 43637718 43638031 -76106867 + AluSx SINE Alu 2 307 -5 206 105 53 0 chr13 43638041 43638079 -76106819 + A-rich Low_complexity Low_complexity 1 40 0 2104 130 10 0 chr13 43638407 43638708 -76106190 - AluSx SINE Alu -8 304 1 763 211 75 111 chr13 43638720 43639074 -76105824 - HAL1 LINE L1 -147 2360 2026 2241 99 3 0 chr13 43639074 43639399 -76105499 - AluSp SINE Alu 0 326 1 763 211 75 111 chr13 43639399 43639537 -76105361 - HAL1 LINE L1 -481 2026 1885 718 281 92 20 chr13 43639536 43639831 -76105067 - HAL1 LINE L1 -2081 426 111 * 232 125 0 0 chr13 43639965 43639997 -76104901 - MER46A DNA MER2_type 0 236 205 2210 111 3 0 chr13 43639997 43640286 -76104612 + AluSq SINE Alu 1 290 -23 1112 166 9 74 chr13 43640306 43640476 -76104422 - MER46A DNA MER2_type -2517 214 61 634 159 106 0 chr13 43640476 43640589 -76104309 + FLAM_A SINE Alu 1 125 -8 1112 166 9 74 chr13 43640589 43640647 -76104251 - MER46A DNA MER2_type -2670 61 1 28 71 0 0 chr13 43640740 43640796 -76104102 + AT_rich Low_complexity Low_complexity 1 56 0 246 278 79 56 chr13 43640849 43640975 -76103923 - MIR3 SINE MIR -76 132 4 4723 254 73 42 chr13 43641812 43642174 -76102724 - L1MEc LINE L1 -4343 2053 1704 315 0 0 0 chr13 43642174 43642209 -76102689 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1987 148 0 0 chr13 43642212 43642490 -76102408 - AluSg SINE Alu -31 279 2 4723 254 73 42 chr13 43642490 43643109 -76101789 - L1MEc LINE L1 -4693 1703 1105 2391 71 3 7 chr13 43643109 43643404 -76101494 + AluSp SINE Alu 1 294 -19 4723 254 73 42 chr13 43643404 43644375 -76100523 - L1MEc LINE L1 -5291 1105 34 2174 112 10 0 chr13 43644497 43644792 -76100106 + AluSp SINE Alu 1 298 -15 2617 36 3 0 chr13 43646291 43646593 -76098305 - AluY SINE Alu -8 303 1 2114 128 13 0 chr13 43646593 43646890 -76098008 - AluSx SINE Alu -10 302 1 2269 115 0 3 chr13 43646930 43647234 -76097664 + AluSg SINE Alu 1 303 -7 243 268 138 43 chr13 43647427 43647565 -76097333 + MLT1K LTR MaLR 252 402 -186 4070 149 19 27 chr13 43647578 43648275 -76096623 + LTR8 LTR ERV1 1 691 0 2773 136 57 47 chr13 43648305 43648344 -76096554 - MER21A LTR ERV1 -22 909 872 5311 64 31 0 chr13 43648344 43649014 -76095884 + LTR8 LTR ERV1 1 691 0 2773 136 57 47 chr13 43649014 43649326 -76095572 - MER21A LTR ERV1 -59 872 549 2037 89 100 0 chr13 43649326 43649597 -76095301 - AluSp SINE Alu -15 298 1 2773 136 57 47 chr13 43649597 43649753 -76095145 - MER21A LTR ERV1 -382 549 396 757 245 16 16 chr13 43649764 43649952 -76094946 - AluJb SINE Alu -18 294 107 1200 143 56 5 chr13 43649981 43650197 -76094701 - MER21A LTR ERV1 -704 227 1 349 273 109 0 chr13 43650204 43650314 -76094584 + MLT1K LTR MaLR 435 556 -32 2443 96 0 3 chr13 43651381 43651694 -76093204 + AluSx SINE Alu 1 312 0 188 171 0 0 chr13 43651791 43651826 -76093072 - MIR SINE MIR -111 151 117 297 0 0 0 chr13 43652125 43652158 -76092740 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr13 43652200 43652229 -76092669 + AT_rich Low_complexity Low_complexity 1 29 0 1539 156 8 38 chr13 43652272 43652535 -76092363 - AluJo SINE Alu -57 255 1 2207 148 16 34 chr13 43652539 43652936 -76091962 - L1MB3 LINE L1 -48 6135 5747 486 340 20 5 chr13 43652936 43653139 -76091759 - L3 LINE CR1 -164 1413 1208 1776 140 0 0 chr13 43654312 43654576 -76090322 + AluSx SINE Alu 49 312 0 2344 98 3 0 chr13 43654699 43654995 -76089903 + AluSc SINE Alu 1 297 -12 288 0 0 0 chr13 43655607 43655639 -76089259 + (TC)n Simple_repeat Simple_repeat 2 33 0 1893 171 41 36 chr13 43657666 43658029 -76086869 - MLT1A1 LTR MaLR 0 365 1 281 261 69 23 chr13 43658193 43658323 -76086575 + MER5A DNA MER1_type 4 139 -50 250 281 140 18 chr13 43658426 43658540 -76086358 + MIR SINE MIR 20 147 -115 306 296 51 0 chr13 43658661 43658759 -76086139 + L2 LINE L2 2560 2662 -652 21 0 0 0 chr13 43659210 43659231 -76085667 + AT_rich Low_complexity Low_complexity 1 21 0 3536 154 48 165 chr13 43659277 43660102 -76084796 - L1MC3 LINE L1 0 7785 6865 537 154 22 0 chr13 43660102 43660193 -76084705 - Tigger5 DNA MER2_type 0 2323 2231 231 200 40 0 chr13 43660200 43660250 -76084648 - Tigger5 DNA MER2_type -2270 53 2 3536 154 48 165 chr13 43660250 43660498 -76084400 - L1MC3 LINE L1 -926 6859 6708 2263 144 78 8 chr13 43660509 43660906 -76083992 - MSTB LTR MaLR -1 425 1 28 0 0 0 chr13 43660932 43660960 -76083938 + AT_rich Low_complexity Low_complexity 1 28 0 712 209 7 0 chr13 43660983 43661122 -76083776 - FLAM_C SINE Alu -1 142 3 2251 101 0 3 chr13 43661176 43661472 -76083426 + AluSg SINE Alu 1 295 -15 583 255 60 30 chr13 43661736 43662003 -76082895 + L1ME4a LINE L1 5831 6105 -16 1948 143 0 3 chr13 43662140 43662440 -76082458 - AluJb SINE Alu -13 299 1 27 0 0 0 chr13 43662491 43662518 -76082380 + AT_rich Low_complexity Low_complexity 1 27 0 335 194 28 14 chr13 43662593 43662665 -76082233 - L2 LINE L2 0 3313 3241 363 276 23 51 chr13 43662683 43662770 -76082128 + L1ME4a LINE L1 5690 5778 -343 2419 84 0 13 chr13 43662770 43663080 -76081818 + AluY SINE Alu 1 306 -5 363 276 23 51 chr13 43663080 43663206 -76081692 + L1ME4a LINE L1 5778 5897 -224 1962 122 54 4 chr13 43663359 43663637 -76081261 - AluSg SINE Alu -18 292 1 882 121 0 64 chr13 43664143 43664284 -76080614 - FLAM_C SINE Alu 0 133 2 421 221 229 0 chr13 43664534 43664656 -76080242 - MIR SINE MIR -11 251 102 181 318 12 0 chr13 43664656 43664741 -76080157 + L2 LINE L2 2148 2233 -1081 243 236 160 38 chr13 43664748 43664854 -76080044 + L2 LINE L2 3195 3313 0 355 216 134 0 chr13 43665158 43665255 -76079643 + MIR SINE MIR 14 123 -139 452 300 109 48 chr13 43665262 43665310 -76079588 - MLT1K LTR MaLR 0 588 544 189 0 0 0 chr13 43665310 43665331 -76079567 + (CAA)n Simple_repeat Simple_repeat 1 21 0 452 300 109 48 chr13 43665331 43665770 -76079128 - MLT1K LTR MaLR -44 544 1 403 293 158 34 chr13 43666344 43666641 -76078257 + L2 LINE L2 2904 3237 -76 2128 103 4 4 chr13 43666651 43666963 -76077935 - AluSx SINE Alu 0 312 1 181 0 0 0 chr13 43667410 43667430 -76077468 + (TTTTG)n Simple_repeat Simple_repeat 1 110 0 2056 113 4 0 chr13 43667430 43667704 -76077194 - AluSx SINE Alu -31 281 7 608 31 31 10 chr13 43668734 43668830 -76076068 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 2235 98 0 3 chr13 43669060 43669370 -76075528 + AluSx SINE Alu 1 309 0 2168 114 7 3 chr13 43672087 43672395 -76072503 + AluSx SINE Alu 1 309 -3 1466 103 79 5 chr13 43672398 43672612 -76072286 + MER30 DNA MER1_type 1 230 0 233 261 0 58 chr13 43673416 43673485 -76071413 + L2 LINE L2 3206 3270 -2 24 0 0 0 chr13 43674109 43674133 -76070765 + AT_rich Low_complexity Low_complexity 1 24 0 466 186 0 12 chr13 43674143 43674229 -76070669 - AluJ/FLAM SINE Alu -226 86 2 644 241 21 7 chr13 43674745 43674890 -76070008 - MER58B DNA MER1_type 0 341 195 288 234 0 31 chr13 43674861 43674925 -76069973 - MER58B DNA MER1_type -279 62 1 * 269 323 134 25 chr13 43674936 43675137 -76069761 - MIR SINE MIR 0 262 40 2143 126 3 0 chr13 43675726 43676019 -76068879 - AluSx SINE Alu -18 294 1 198 250 14 83 chr13 43676134 43676206 -76068692 - MIR SINE MIR -78 184 118 924 217 0 0 chr13 43676569 43676767 -76068131 - AluJo SINE Alu -1 311 114 316 219 14 0 chr13 43676767 43676840 -76068058 - L1ME2 LINE L1 -15 6149 6076 708 215 37 6 chr13 43677845 43678008 -76066890 + MIR SINE MIR 31 198 -64 875 193 14 45 chr13 43678014 43678237 -76066661 - L2 LINE L2 -3 3310 3095 2188 107 0 0 chr13 43678237 43678517 -76066381 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr13 43678519 43678546 -76066352 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 274 215 25 91 chr13 43679002 43679123 -76065775 + L2 LINE L2 3152 3264 -49 2233 126 7 0 chr13 43681889 43682199 -76062699 - AluSx SINE Alu 0 312 1 660 245 31 20 chr13 43682204 43682400 -76062498 - L1MC5 LINE L1 -54 7907 7710 2036 164 49 49 chr13 43682920 43683159 -76061739 - MSTB LTR MaLR 0 426 185 2185 127 0 0 chr13 43683159 43683450 -76061448 - AluSx SINE Alu -21 291 1 2036 164 49 49 chr13 43683450 43683636 -76061262 - MSTB LTR MaLR -240 186 1 328 308 0 0 chr13 43683808 43683899 -76060999 + L2 LINE L2 3219 3309 -4 503 226 94 31 chr13 43683982 43684141 -76060757 + MIR SINE MIR 46 214 -48 240 86 0 0 chr13 43685266 43685301 -76059597 + (A)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr13 43685786 43685820 -76059078 + (TG)n Simple_repeat Simple_repeat 2 35 0 2347 80 3 13 chr13 43686465 43686767 -76058131 - AluSq SINE Alu -12 301 3 369 0 0 0 chr13 43687807 43687848 -76057050 + (TG)n Simple_repeat Simple_repeat 2 42 0 2373 148 46 7 chr13 43688263 43688675 -76056223 - MSTC LTR MaLR 0 428 1 1251 171 9 5 chr13 43690041 43690257 -76054641 + AluJo SINE Alu 83 299 -13 2379 104 0 0 chr13 43691584 43691891 -76053007 + AluSg SINE Alu 4 310 0 286 176 20 0 chr13 43692028 43692079 -76052819 - MER66A LTR ERV1 -140 338 287 1544 99 5 18 chr13 43692216 43692437 -76052461 - AluSp SINE Alu -8 305 88 1236 223 10 14 chr13 43693511 43693802 -76051096 - AluSp SINE Alu -13 290 1 2128 138 0 19 chr13 43693830 43694148 -76050750 + AluJb SINE Alu 1 312 0 1275 128 8 64 chr13 43694289 43694524 -76050374 - AluSq SINE Alu -4 309 88 1731 197 7 3 chr13 43694827 43695137 -76049761 - AluJb SINE Alu -1 311 1 36 53 0 0 chr13 43695142 43695199 -76049699 + AT_rich Low_complexity Low_complexity 1 57 0 1921 126 30 0 chr13 43695220 43695511 -76049387 - AluSg SINE Alu 0 301 3 749 186 16 115 chr13 43695597 43695850 -76049048 - L1MD2 LINE L1 -1 6358 6131 * 21624 87 8 4 chr13 43695834 43695857 -76049041 - L1P LINE L1 -2124 4022 4001 389 98 0 0 chr13 43695857 43695918 -76048980 - L1PA3 LINE L1 -1 6154 6094 21624 87 8 4 chr13 43695918 43698888 -76046010 - L1P LINE L1 -2145 4001 1018 1767 170 35 3 chr13 43698946 43699234 -76045664 - AluJb SINE Alu -15 297 1 1238 114 0 0 chr13 43699241 43699407 -76045491 - AluSx SINE Alu -2 308 143 385 141 0 31 chr13 43699408 43699472 -76045426 - AluJo SINE Alu -121 181 120 993 171 0 47 chr13 43699485 43699655 -76045243 - AluSx SINE Alu -150 162 1 508 186 12 0 chr13 43699823 43699909 -76044989 - MER7C DNA MER2_type -28 574 488 2091 119 0 75 chr13 43699915 43700050 -76044848 - MER1B DNA MER1_type -2379 333 189 1540 116 9 21 chr13 43700050 43700283 -76044615 + MER30 DNA MER1_type 1 230 0 2091 119 0 75 chr13 43700283 43700507 -76044391 - MER1B DNA MER1_type -2523 189 1 * 2482 163 40 50 chr13 43700507 43701009 -76043889 - MER7C DNA MER2_type -105 497 1 1631 117 0 0 chr13 43701471 43701693 -76043205 - AluSg/x SINE Alu -19 293 72 1885 134 31 3 chr13 43701698 43701989 -76042909 - AluSx SINE Alu -11 301 3 2226 106 0 0 chr13 43702422 43702736 -76042162 - AluSq SINE Alu 0 314 1 207 0 0 0 chr13 43702762 43702785 -76042113 + (T)n Simple_repeat Simple_repeat 1 23 0 1629 165 34 3 chr13 43702891 43703182 -76041716 + AluJb SINE Alu 1 300 -12 653 247 124 10 chr13 43703209 43703403 -76041495 + MIR SINE MIR 44 259 -3 1967 109 55 0 chr13 43703423 43703697 -76041201 - AluSx SINE Alu -23 289 1 233 260 0 0 chr13 43703901 43703951 -76040947 + Charlie8 DNA MER1_type 1373 1422 -995 2323 96 3 10 chr13 43704121 43704300 -76040598 - AluSx SINE Alu 0 312 134 2228 110 3 0 chr13 43704300 43704621 -76040277 - AluSp SINE Alu 0 313 1 2323 96 3 10 chr13 43704621 43704755 -76040143 - AluSx SINE Alu -178 134 1 21 0 0 0 chr13 43704883 43704904 -76039994 + AT_rich Low_complexity Low_complexity 1 21 0 1954 195 128 76 chr13 43705055 43705756 -76039142 - LTR1B LTR ERV1 -88 738 1 786 183 49 0 chr13 43705781 43705945 -76038953 + L1MC1 LINE L1 6162 6333 0 296 271 17 34 chr13 43705955 43706073 -76038825 - MIR SINE MIR 0 262 147 247 349 40 24 chr13 43706164 43706290 -76038608 - MIR SINE MIR -112 150 23 627 288 35 35 chr13 43706607 43706836 -76038062 - MIR SINE MIR -9 253 25 2021 141 0 17 chr13 43707345 43707664 -76037234 + AluSx SINE Alu 1 312 0 675 269 124 22 chr13 43707860 43708135 -76036763 + L1ME4a LINE L1 5566 5868 -253 1239 217 51 74 chr13 43708172 43708521 -76036377 - L1MC5 LINE L1 -66 7895 7562 2329 96 0 7 chr13 43708521 43708822 -76036076 + AluSq SINE Alu 1 299 -14 1239 217 51 74 chr13 43708822 43709038 -76035860 - L1MC5 LINE L1 -399 7562 7343 2011 159 86 0 chr13 43709067 43709426 -76035472 + MLT1B LTR MaLR 1 390 0 883 130 0 46 chr13 43709546 43709677 -76035221 + FLAM_C SINE Alu 1 125 -18 563 300 53 16 chr13 43709700 43709890 -76035008 - MIR SINE MIR -28 234 38 642 286 47 5 chr13 43710348 43710561 -76034337 + MIR SINE MIR 16 237 -25 7882 110 27 24 chr13 43711641 43712882 -76032016 - MER52C LTR ERV1 0 1278 35 1263 185 46 108 chr13 43713662 43714051 -76030847 + MLT1A1 LTR MaLR 1 365 0 2153 82 0 4 chr13 43714149 43714416 -76030482 + AluSg SINE Alu 14 279 -31 328 0 20 41 chr13 43714419 43714468 -76030430 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 371 294 49 35 chr13 43714498 43714718 -76030180 - MIR SINE MIR -6 256 31 22 0 0 0 chr13 43714743 43714765 -76030133 + AT_rich Low_complexity Low_complexity 1 22 0 2104 149 18 39 chr13 43715585 43715624 -76029274 - THE1C LTR MaLR 0 375 337 2228 141 0 0 chr13 43715624 43715936 -76028962 + AluSx SINE Alu 1 312 0 2104 149 18 39 chr13 43715936 43716279 -76028619 - THE1C LTR MaLR -38 337 1 198 276 134 55 chr13 43716823 43716950 -76027948 + L2 LINE L2 3136 3272 0 1695 168 93 110 chr13 43717438 43717839 -76027059 - MLT2B1 LTR ERVL 0 520 129 1773 169 21 58 chr13 43717839 43718149 -76026749 + MLT1A1 LTR MaLR 1 296 -69 2272 107 0 3 chr13 43718149 43718447 -76026451 - AluSq SINE Alu -16 297 1 1773 169 21 58 chr13 43718447 43718515 -76026383 + MLT1A1 LTR MaLR 296 365 0 1695 168 93 110 chr13 43718515 43718642 -76026256 - MLT2B1 LTR ERVL -391 129 1 387 241 60 9 chr13 43718735 43718851 -76026047 - LTR67 LTR ERVL 0 557 436 268 258 21 129 chr13 43719037 43719231 -76025667 - LTR67 LTR ERVL -364 193 21 1651 175 145 7 chr13 43719880 43720314 -76024584 - LTR54B LTR ERV1 -4 494 1 221 351 9 45 chr13 43720926 43720944 -76023954 + L2 LINE L2 2444 2461 -853 2354 72 3 13 chr13 43720944 43721251 -76023647 - AluSx SINE Alu -8 304 1 221 351 9 45 chr13 43721251 43721343 -76023555 + L2 LINE L2 2461 2550 -764 2532 51 3 13 chr13 43721571 43721883 -76023015 - AluY SINE Alu -2 309 1 2137 116 0 20 chr13 43722311 43722614 -76022284 - AluSx SINE Alu -15 297 1 1240 251 122 43 chr13 43722794 43723403 -76021495 + MLT2F LTR ERVL 1 657 -6 293 288 55 31 chr13 43723936 43724099 -76020799 + MIR SINE MIR 96 262 0 325 313 52 8 chr13 43724142 43724276 -76020622 - MIR SINE MIR 0 262 123 1790 185 93 14 chr13 43724546 43724978 -76019920 + MLT1C LTR MaLR 2 467 0 359 256 134 17 chr13 43725116 43725288 -76019610 - MIR SINE MIR -70 192 1 1885 203 7 56 chr13 43726155 43726234 -76018664 - MSTD LTR MaLR -2 394 313 2162 119 6 3 chr13 43726234 43726545 -76018353 + AluSx SINE Alu 1 312 0 1885 203 7 56 chr13 43726545 43726878 -76018020 - MSTD LTR MaLR -83 313 2 329 276 38 0 chr13 43726899 43727004 -76017894 + LTR33 LTR ERVL 33 141 -380 276 81 0 0 chr13 43727055 43727092 -76017806 + MLT2A2 LTR ERVL 267 303 -150 * 492 261 69 15 chr13 43727059 43727189 -76017709 + MLT2B3 LTR ERVL 267 403 -151 246 118 0 0 chr13 43727171 43727205 -76017693 + MLT2A2 LTR ERVL 293 326 -127 * 531 105 0 0 chr13 43727233 43727309 -76017589 + Alu SINE Alu 220 295 -14 615 34 2 0 chr13 43727309 43727428 -76017470 - MLT2A2 LTR ERVL -355 98 1 202 254 0 36 chr13 43727506 43727561 -76017337 + CT-rich Low_complexity Low_complexity 2 54 0 1351 165 9 120 chr13 43728242 43728575 -76016323 - AluJo SINE Alu -4 298 3 552 230 115 30 chr13 43728813 43729039 -76015859 + MIR SINE MIR 19 258 -4 2106 164 22 3 chr13 43730013 43730379 -76014519 - L1MB2 LINE L1 0 6171 5799 357 270 84 22 chr13 43730666 43730844 -76014054 + MIR SINE MIR 62 250 -12 1386 174 4 68 chr13 43731103 43731384 -76013514 + AluJo SINE Alu 1 263 -49 266 0 0 29 chr13 43731883 43731918 -76012980 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 2014 109 0 4 chr13 43731926 43732200 -76012698 - AluSx SINE Alu -39 273 1 22 56 0 0 chr13 43733210 43733246 -76011652 + AT_rich Low_complexity Low_complexity 1 36 0 326 250 21 21 chr13 43733394 43733490 -76011408 - L1MB2 LINE L1 -392 5729 5634 4499 230 165 76 chr13 43733956 43734208 -76010690 - HAL1 LINE L1 0 2507 2279 1756 143 0 51 chr13 43734208 43734502 -76010396 - AluJb SINE Alu -11 301 23 4499 230 165 76 chr13 43734502 43736511 -76008387 - HAL1 LINE L1 -228 2279 44 257 339 36 26 chr13 43736887 43737002 -76007896 - MIR SINE MIR -61 147 40 227 137 78 20 chr13 43738570 43738621 -76006277 - MIR SINE MIR -128 134 81 27 29 0 0 chr13 43742462 43742496 -76002402 + AT_rich Low_complexity Low_complexity 1 34 0 800 276 154 34 chr13 43742585 43743052 -76001846 - LTR33A LTR ERVL 0 523 1 2084 160 98 50 chr13 43743289 43743409 -76001489 + MLT1D LTR MaLR 3 116 -389 2269 112 3 16 chr13 43743409 43743721 -76001177 - AluSx SINE Alu -4 308 1 2084 160 98 50 chr13 43743721 43744080 -76000818 + MLT1D LTR MaLR 116 505 0 359 241 62 25 chr13 43744365 43744516 -76000382 + MLT1F1 LTR MaLR 42 198 -369 243 216 0 0 chr13 43744537 43744640 -76000258 + CT-rich Low_complexity Low_complexity 1 103 0 1280 115 146 181 chr13 43745199 43745618 -75999280 - MER4A LTR ERV1 0 664 261 431 263 67 34 chr13 43745687 43745866 -75999032 - MIR SINE MIR -70 192 8 2038 129 7 0 chr13 43745988 43746317 -75998581 - AluSx SINE Alu 0 331 1 1058 170 9 65 chr13 43746352 43746582 -75998316 - MER20 DNA MER1_type -2 217 1 312 91 0 0 chr13 43746723 43746767 -75998131 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1746 171 34 0 chr13 43746767 43747059 -75997839 - AluJb SINE Alu -10 302 1 1038 255 93 26 chr13 43747556 43747933 -75996965 - LTR16C LTR ERVL -6 485 84 1861 258 60 34 chr13 43747954 43748519 -75996379 - MLT1E LTR MaLR 0 593 14 2175 120 3 0 chr13 43749475 43749775 -75995123 + AluSg SINE Alu 1 301 -9 2112 146 3 0 chr13 43750013 43750383 -75994515 - AluSx SINE Alu 0 371 1 215 220 88 0 chr13 43750834 43750925 -75993973 + L2 LINE L2 949 1047 -2267 1081 188 14 19 chr13 43750959 43751167 -75993731 - MSTD LTR MaLR -3 393 187 1083 118 6 30 chr13 43751169 43751338 -75993560 - AluSg/x SINE Alu -11 301 137 910 160 19 18 chr13 43751340 43751506 -75993392 - MSTD LTR MaLR -243 153 7 3163 267 132 16 chr13 43751513 43753521 -75991377 + L2 LINE L2 1063 3313 0 1627 41 0 0 chr13 43754196 43754390 -75990508 + L1PA6 LINE L1 5959 6152 -2 2119 166 24 7 chr13 43754424 43754833 -75990065 + L1MB8 LINE L1 5751 6166 -12 348 197 19 188 chr13 43754897 43755004 -75989894 + MER69A DNA AcHobo 2 59 -2467 2319 109 0 0 chr13 43755004 43755307 -75989591 - AluSg SINE Alu -7 303 1 348 197 19 188 chr13 43755307 43755407 -75989491 + MER69A DNA AcHobo 59 174 -3 24 53 0 0 chr13 43755759 43755797 -75989101 + AT_rich Low_complexity Low_complexity 1 38 0 314 272 97 16 chr13 43756908 43757105 -75987793 - MIR SINE MIR -7 255 40 835 226 71 4 chr13 43757271 43757537 -75987361 + L2 LINE L2 2228 2511 -803 9373 103 9 7 chr13 43757540 43758816 -75986082 - HSMAR1 DNA Mariner -3 1284 6 852 233 224 26 chr13 43758816 43759237 -75985661 + L2 LINE L2 2514 2850 -463 2069 195 6 3 chr13 43759237 43759601 -75985297 - MLT1A1 LTR MaLR 0 365 1 852 233 224 26 chr13 43759601 43759841 -75985057 + L2 LINE L2 2850 3312 -1 1719 146 56 14 chr13 43759972 43760259 -75984639 - AluJb SINE Alu -11 301 3 513 177 102 128 chr13 43760953 43761173 -75983725 - L1MC5 LINE L1 -51 7910 7697 2052 149 0 3 chr13 43761173 43761481 -75983417 + AluJb SINE Alu 1 307 -5 513 177 102 128 chr13 43761481 43761526 -75983372 - L1MC5 LINE L1 -264 7697 7652 307 291 81 34 chr13 43761764 43761912 -75982986 + MIR SINE MIR 50 204 -58 2067 125 0 67 chr13 43762021 43762350 -75982548 + AluSx SINE Alu 1 307 -5 547 292 96 48 chr13 43763165 43763497 -75981401 + L2 LINE L2 2916 3263 -9 288 142 43 185 chr13 43763513 43763637 -75981261 - MIR SINE MIR -11 251 154 2196 99 7 17 chr13 43763637 43763929 -75980969 - AluSx SINE Alu -23 289 1 288 142 43 185 chr13 43763929 43763966 -75980932 - MIR SINE MIR -108 154 113 855 138 0 15 chr13 43764751 43764881 -75980017 + FLAM_A SINE Alu 1 128 -5 203 229 0 0 chr13 43764957 43764992 -75979906 + (CGTG)n Simple_repeat Simple_repeat 4 38 0 1531 261 118 39 chr13 43765136 43765640 -75979258 + MER115 DNA AcHobo 11 575 -118 2268 200 113 16 chr13 43765640 43766199 -75978699 + MER90 LTR ERV1 2 614 0 1531 261 118 39 chr13 43766199 43766314 -75978584 + MER115 DNA AcHobo 575 679 -14 2072 108 0 0 chr13 43766913 43767182 -75977716 - AluSx SINE Alu -2 310 42 453 127 14 0 chr13 43767182 43767253 -75977645 - AluS SINE Alu -240 73 2 2191 114 0 32 chr13 43767750 43768058 -75976840 - AluSx SINE Alu -14 298 1 340 108 45 27 chr13 43768059 43768161 -75976737 + T-rich Low_complexity Low_complexity 3 109 -6 2411 89 3 10 chr13 43768161 43768475 -75976423 - AluSx SINE Alu 0 312 1 850 137 0 0 chr13 43768500 43768617 -75976281 + FLAM_C SINE Alu 2 118 -15 34 24 0 0 chr13 43768617 43768658 -75976240 + AT_rich Low_complexity Low_complexity 1 41 0 550 265 56 68 chr13 43768658 43768753 -75976145 - L1MC4 LINE L1 -24 8018 7923 306 0 0 0 chr13 43768753 43768787 -75976111 + (CA)n Simple_repeat Simple_repeat 2 35 0 550 265 56 68 chr13 43768787 43769071 -75975827 - L1MC4 LINE L1 -119 7923 7521 5250 129 28 23 chr13 43769090 43769964 -75974934 - L1MC1 LINE L1 -16 6317 5440 182 330 22 22 chr13 43769965 43770056 -75974842 - L3 LINE CR1 -164 1413 1323 775 234 16 96 chr13 43770176 43770479 -75974419 + Charlie8 DNA MER1_type 1 279 -2138 247 267 53 0 chr13 43770528 43770603 -75974295 + Charlie8 DNA MER1_type 2339 2417 0 1217 189 68 4 chr13 43770651 43770823 -75974075 - AluJo SINE Alu 0 307 109 198 0 0 0 chr13 43770823 43770845 -75974053 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1217 189 68 4 chr13 43770845 43770961 -75973937 - AluJo SINE Alu -198 109 2 255 239 14 42 chr13 43770968 43771039 -75973859 - MIR SINE MIR -75 187 119 208 270 63 16 chr13 43772403 43772466 -75972432 - L2 LINE L2 -55 3217 3152 467 296 136 0 chr13 43772588 43772750 -75972148 - MER63A DNA MER1_type -23 187 4 948 147 0 0 chr13 43772779 43772929 -75971969 + FRAM SINE Alu 8 157 -19 396 228 50 95 chr13 43773381 43773570 -75971328 - MIR3 SINE MIR -7 201 17 2405 162 86 35 chr13 43773586 43774099 -75970799 + LTR55 LTR ERV 1 539 -9 1719 166 0 3 chr13 43774140 43774429 -75970469 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr13 43774430 43774456 -75970442 + AT_rich Low_complexity Low_complexity 1 26 0 442 221 52 44 chr13 43775340 43775476 -75969422 - MIR SINE MIR -47 215 79 1181 153 64 70 chr13 43775508 43775822 -75969076 + MER33 DNA MER1_type 6 317 -7 576 268 90 38 chr13 43777182 43777367 -75967531 + MIR3 SINE MIR 5 205 -3 2371 93 0 0 chr13 43777689 43778002 -75966896 - AluSq SINE Alu 0 313 1 1263 203 12 92 chr13 43778535 43778823 -75966075 - Charlie5 DNA MER1_type 0 2624 2379 1698 158 11 0 chr13 43778823 43779108 -75965790 - AluJo SINE Alu -23 289 2 1263 203 12 92 chr13 43779108 43779242 -75965656 - Charlie5 DNA MER1_type -245 2379 2236 553 217 17 0 chr13 43779252 43779372 -75965526 - MER3 DNA MER1_type -87 122 48 268 264 18 45 chr13 43779459 43779569 -75965329 + L2 LINE L2 3160 3266 -6 186 43 0 0 chr13 43780642 43780665 -75964233 + (TTG)n Simple_repeat Simple_repeat 2 24 0 768 286 24 78 chr13 43781372 43781784 -75963114 - MLT1K LTR MaLR 0 588 199 511 296 62 36 chr13 43782078 43782352 -75962546 + L1MC4 LINE L1 7618 7898 -144 339 25 0 0 chr13 43782359 43782399 -75962499 + (TG)n Simple_repeat Simple_repeat 2 41 0 650 166 283 0 chr13 43782830 43782975 -75961923 - MLT1D LTR MaLR 0 505 320 1359 212 61 88 chr13 43783208 43783317 -75961581 + L1MC5 LINE L1 7260 7370 -591 2177 68 3 19 chr13 43783317 43783663 -75961235 + AluY SINE Alu 1 311 0 1359 212 61 88 chr13 43783663 43784030 -75960868 + L1MC5 LINE L1 7370 7746 -215 248 0 0 30 chr13 43784030 43784063 -75960835 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 2266 60 4 0 chr13 43784067 43784348 -75960550 - AluY SINE Alu -29 282 1 1359 212 61 88 chr13 43784348 43784393 -75960505 + L1MC5 LINE L1 7749 7794 -167 11066 34 1 0 chr13 43784393 43786456 -75958442 + L1PA5 LINE L1 4090 6153 -1 1359 212 61 88 chr13 43786456 43786616 -75958282 + L1MC5 LINE L1 7794 7929 -32 814 241 85 98 chr13 43786641 43787159 -75957739 + MLT1J LTR MaLR 1 511 0 246 297 16 0 chr13 43787244 43787308 -75957590 - L2 LINE L2 -220 3052 2988 1293 171 105 49 chr13 43787344 43787630 -75957268 + AluJb SINE Alu 1 302 0 237 265 20 82 chr13 43788179 43788277 -75956621 + MIR SINE MIR 56 147 -61 391 152 22 87 chr13 43788952 43789044 -75955854 - MLT1D LTR MaLR -323 182 95 2130 96 3 7 chr13 43789170 43789472 -75955426 + AluSx SINE Alu 1 301 -11 1710 199 39 34 chr13 43789472 43789880 -75955018 - MLT1D LTR MaLR -95 410 1 1570 174 7 4 chr13 43791553 43791851 -75953047 - AluJb SINE Alu 0 307 9 1864 132 0 24 chr13 43791924 43792219 -75952679 + AluSx SINE Alu 1 288 -24 380 213 143 49 chr13 43792246 43792490 -75952408 + L1ME4a LINE L1 5855 6121 0 438 241 86 37 chr13 43793152 43793314 -75951584 + MIR SINE MIR 69 238 -24 925 111 0 42 chr13 43793568 43793712 -75951186 + AluJo SINE Alu 2 139 -173 1563 168 15 4 chr13 43793716 43793984 -75950914 + AluJo SINE Alu 21 291 -21 4319 188 51 9 chr13 43794964 43795333 -75949565 - MER54A LTR ERVL -2 899 547 2313 56 10 7 chr13 43795333 43795638 -75949260 + AluY SINE Alu 3 308 -3 4319 188 51 9 chr13 43795638 43796131 -75948767 - MER54A LTR ERVL -354 547 1 753 212 61 30 chr13 43796263 43796461 -75948437 - MIR SINE MIR -11 251 48 250 261 118 65 chr13 43796971 43797124 -75947774 + L2 LINE L2 3108 3268 -4 1794 165 0 0 chr13 43798189 43798480 -75946418 - AluJb SINE Alu -20 292 2 1695 69 142 0 chr13 43799664 43799952 -75944946 + AluY SINE Alu 1 323 0 2340 98 48 31 chr13 43800033 43800391 -75944507 + THE1B LTR MaLR 1 364 0 448 241 36 9 chr13 43801855 43801967 -75942931 + MIR SINE MIR 32 146 -116 2106 127 0 10 chr13 43802523 43802837 -75942061 + AluSx SINE Alu 1 311 -1 374 332 31 57 chr13 43803055 43803130 -75941768 - L2 LINE L2 -3 3269 3194 850 132 0 31 chr13 43803130 43803259 -75941639 + FLAM_C SINE Alu 3 127 -6 374 332 31 57 chr13 43803259 43803376 -75941522 - L2 LINE L2 -78 3194 3082 382 194 21 11 chr13 43803903 43803996 -75940902 - L1ME3A LINE L1 0 6170 6077 202 294 59 0 chr13 43804855 43804923 -75939975 - L2 LINE L2 0 3272 3201 886 289 87 18 chr13 43804978 43805354 -75939544 + MLT1J2 LTR MaLR 66 444 -6 2247 97 0 7 chr13 43805437 43805745 -75939153 + AluSg SINE Alu 1 306 -4 319 232 24 73 chr13 43805798 43805880 -75939018 + L1MC4 LINE L1 6635 6712 -1330 331 290 71 18 chr13 43805993 43806162 -75938736 + MLT1K LTR MaLR 229 406 -182 1529 246 90 44 chr13 43806606 43807172 -75937726 - MLT1G1 LTR MaLR -3 592 1 361 284 26 84 chr13 43807244 43807293 -75937605 + MLT1K LTR MaLR 393 443 -145 1800 163 0 7 chr13 43807293 43807613 -75937285 + AluSx SINE Alu 1 312 0 361 284 26 84 chr13 43807613 43807753 -75937145 + MLT1K LTR MaLR 443 571 -17 1971 133 0 7 chr13 43807816 43808116 -75936782 - AluSx SINE Alu -14 298 1 311 216 0 40 chr13 43808160 43808234 -75936664 + FLAM SINE Alu 64 125 -8 823 145 8 8 chr13 43808245 43808376 -75936522 + FLAM_C SINE Alu 1 131 -12 371 319 17 17 chr13 43808387 43808506 -75936392 - L2 LINE L2 -4 3309 3191 277 232 42 53 chr13 43808601 43808696 -75936202 - L2 LINE L2 -1206 2108 2015 2318 75 0 0 chr13 43808735 43809029 -75935869 + AluSc SINE Alu 1 294 -15 216 67 0 0 chr13 43809240 43809270 -75935628 + (GA)n Simple_repeat Simple_repeat 1 30 0 432 0 0 0 chr13 43809270 43809318 -75935580 + (TG)n Simple_repeat Simple_repeat 2 49 0 388 276 32 87 chr13 43809655 43809840 -75935058 - MIR3 SINE MIR -4 204 30 449 312 39 34 chr13 43810484 43810689 -75934209 - MIR SINE MIR 0 262 57 348 259 24 0 chr13 43810796 43810881 -75934017 - MIR SINE MIR -110 152 66 1553 181 20 10 chr13 43810908 43811201 -75933697 - AluJb SINE Alu -16 296 1 579 245 86 0 chr13 43811250 43811389 -75933509 - MIR SINE MIR -5 257 107 2171 118 0 0 chr13 43811589 43811886 -75933012 + AluSx SINE Alu 2 298 -14 389 273 94 38 chr13 43812006 43812313 -75932585 + MLT1J LTR MaLR 219 542 0 416 266 133 73 chr13 43813008 43813377 -75931521 - MLT1K LTR MaLR -11 577 187 2321 87 0 0 chr13 43813414 43813712 -75931186 + AluSg SINE Alu 1 298 -12 1087 147 17 82 chr13 43814045 43814277 -75930621 - MER20 DNA MER1_type 0 219 3 424 265 70 76 chr13 43814546 43814653 -75930245 - MIR SINE MIR -70 192 85 1852 122 14 10 chr13 43814653 43814949 -75929949 + AluJb SINE Alu 1 297 -15 424 265 70 76 chr13 43814949 43815026 -75929872 - MIR SINE MIR -177 85 9 491 289 8 63 chr13 43815368 43815514 -75929384 + MIR3 SINE MIR 6 143 -65 1794 169 0 0 chr13 43815514 43815810 -75929088 - AluJo SINE Alu -15 297 2 491 289 8 63 chr13 43815810 43815853 -75929045 + MIR3 SINE MIR 143 187 -21 1581 141 74 27 chr13 43817057 43817355 -75927543 - AluJo SINE Alu 0 312 1 359 311 61 45 chr13 43817684 43817816 -75927082 + L2 LINE L2 3180 3313 0 276 291 0 13 chr13 43817868 43817947 -75926951 + L2 LINE L2 3235 3312 -1 224 308 13 0 chr13 43818536 43818614 -75926284 + CT-rich Low_complexity Low_complexity 4 82 0 1298 224 128 17 chr13 43819057 43819472 -75925426 - MLT1C LTR MaLR -1 466 6 1138 179 63 5 chr13 43819667 43819874 -75925024 + MER20 DNA MER1_type 1 219 0 1935 106 3 3 chr13 43820033 43820353 -75924545 - AluSx SINE Alu 0 320 1 3300 74 2 9 chr13 43820425 43820870 -75924028 - L1PA13 LINE L1 -2 6161 5720 281 336 63 45 chr13 43821069 43821481 -75923417 + L2 LINE L2 2851 3271 -1 2591 103 3 0 chr13 43821803 43822170 -75922728 + L1PA8 LINE L1 5805 6172 0 650 272 112 18 chr13 43822467 43822819 -75922079 + MLT1J LTR MaLR 51 476 -35 297 323 124 58 chr13 43823434 43823886 -75921012 - L2 LINE L2 0 3313 2832 231 36 0 0 chr13 43827255 43827283 -75917615 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 219 159 0 23 chr13 43828500 43828544 -75916354 + GA-rich Low_complexity Low_complexity 3 45 0 217 228 118 81 chr13 43828578 43828714 -75916184 - MIR SINE MIR -59 203 63 2024 108 11 4 chr13 43830043 43830346 -75914552 - AluSx SINE Alu 0 305 1 252 149 0 0 chr13 43830489 43830536 -75914362 + (TA)n Simple_repeat Simple_repeat 2 48 0 276 149 0 0 chr13 43830569 43830616 -75914282 + (CATA)n Simple_repeat Simple_repeat 2 48 0 201 74 0 0 chr13 43830913 43830940 -75913958 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 316 246 76 42 chr13 43831341 43831459 -75913439 - L1ME LINE L1 -473 5648 5527 496 306 32 0 chr13 43831649 43831806 -75913092 - MER91B DNA MER1_type 0 190 29 2149 149 0 3 chr13 43833096 43833405 -75911493 + AluSx SINE Alu 1 308 -4 1320 246 108 46 chr13 43833527 43833999 -75910899 + MER77 LTR ERV1 119 599 -6 284 218 36 0 chr13 43833973 43834028 -75910870 + MER21A LTR ERV1 682 738 -193 * 215 208 21 0 chr13 43834399 43834447 -75910451 + L2 LINE L2 3224 3272 0 463 129 82 0 chr13 43834516 43834601 -75910297 - L1MB7 LINE L1 -15 6169 6078 210 239 0 0 chr13 43835095 43835141 -75909757 - L2 LINE L2 -6 3307 3262 243 270 81 18 chr13 43835634 43835745 -75909153 - L2 LINE L2 -643 2671 2554 229 120 40 20 chr13 43835772 43835822 -75909076 + A-rich Low_complexity Low_complexity 3 53 0 273 119 0 0 chr13 43835874 43835916 -75908982 + (ATG)n Simple_repeat Simple_repeat 1 42 0 538 225 23 0 chr13 43835923 43836052 -75908846 - MIR SINE MIR -42 220 89 1333 114 19 215 chr13 43836221 43836625 -75908273 - AluJb SINE Alu 0 330 1 380 353 29 10 chr13 43836673 43836880 -75908018 - L3 LINE CR1 -1131 446 236 1966 152 0 0 chr13 43837287 43837617 -75907281 + AluSx SINE Alu 1 330 0 237 288 15 0 chr13 43837793 43837859 -75907039 + MIR3 SINE MIR 136 202 -6 1456 159 32 62 chr13 43838163 43838471 -75906427 - AluJo SINE Alu -13 299 1 23 54 0 0 chr13 43838712 43838749 -75906149 + AT_rich Low_complexity Low_complexity 1 37 0 2050 96 4 0 chr13 43838749 43839020 -75905878 + AluSq SINE Alu 1 272 -41 2377 49 0 3 chr13 43839022 43839307 -75905591 + AluY SINE Alu 17 300 -11 227 30 0 30 chr13 43839505 43839538 -75905360 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 652 0 0 0 chr13 43840180 43840253 -75904645 - tRNA-Glu-GAA tRNA tRNA -2 73 1 257 205 115 0 chr13 43840415 43840493 -75904405 + L2 LINE L2 2130 2216 -1098 2254 103 0 13 chr13 43841440 43841750 -75903148 + AluSx SINE Alu 1 306 -6 189 200 120 0 chr13 43841826 43841876 -75903022 - MIR SINE MIR -71 191 136 1667 150 15 11 chr13 43842289 43842563 -75902335 - AluJb SINE Alu -9 303 29 883 213 40 0 chr13 43842684 43842858 -75902040 - MER63A DNA MER1_type -2 208 28 2201 117 0 0 chr13 43843000 43843298 -75901600 + AluSx SINE Alu 1 298 -14 293 252 145 44 chr13 43843480 43843639 -75901259 + MER5A DNA MER1_type 15 189 0 255 292 52 0 chr13 43844130 43844226 -75900672 - L3b LINE CR1 -144 1439 1339 322 265 45 61 chr13 43844953 43845085 -75899813 + L2 LINE L2 3107 3236 -36 441 228 26 0 chr13 43845102 43845216 -75899682 - MIR SINE MIR -51 211 95 28 48 0 0 chr13 43845252 43845294 -75899604 + AT_rich Low_complexity Low_complexity 1 42 0 959 229 31 0 chr13 43846193 43846420 -75898478 - MIR SINE MIR 0 262 29 1462 271 124 27 chr13 43846917 43847836 -75897062 + L2 LINE L2 2294 3313 0 2500 175 49 68 chr13 43848547 43848840 -75896058 - MER89 LTR ERV1 0 559 262 1903 137 11 4 chr13 43848840 43849111 -75895787 + AluSx SINE Alu 1 273 -39 2389 84 0 3 chr13 43849121 43849418 -75895480 + AluSx SINE Alu 1 296 -16 2500 175 49 68 chr13 43849418 43849683 -75895215 - MER89 LTR ERV1 -306 253 1 2075 96 7 3 chr13 43849914 43850219 -75894679 + AluSx SINE Alu 1 306 0 2185 123 0 10 chr13 43851050 43851358 -75893540 + AluSq SINE Alu 1 305 -8 2325 100 3 6 chr13 43851587 43851898 -75893000 + AluSg SINE Alu 1 310 0 373 191 85 0 chr13 43852517 43852611 -75892287 + LTR50 LTR ERVL 57 158 -637 874 199 241 74 chr13 43852660 43852931 -75891967 + LTR50 LTR ERVL 292 517 -278 2099 123 3 0 chr13 43852931 43853231 -75891667 - AluSx SINE Alu -6 306 6 874 199 241 74 chr13 43853231 43853391 -75891507 + LTR50 LTR ERVL 517 795 0 1451 220 115 5 chr13 43853612 43853985 -75890913 - LTR40b LTR ERVL -47 415 2 2077 122 7 7 chr13 43854198 43854493 -75890405 - AluSx SINE Alu -12 300 6 301 308 92 46 chr13 43855125 43855472 -75889426 - L2 LINE L2 -32 3281 2919 746 193 7 0 chr13 43855812 43855957 -75888941 + MER5A DNA MER1_type 1 146 -43 312 248 188 27 chr13 43856007 43856156 -75888742 + MER5A DNA MER1_type 17 189 0 2156 120 0 3 chr13 43856604 43856913 -75887985 - AluSx SINE Alu 0 308 1 244 219 103 41 chr13 43857875 43858021 -75886877 + L1P LINE L1 5270 5424 -742 436 217 209 98 chr13 43858483 43858842 -75886056 - LTR37B LTR ERV1 -1 467 69 1234 164 14 10 chr13 43858857 43859064 -75885834 - AluSg/x SINE Alu -6 304 97 1365 130 30 0 chr13 43859086 43859286 -75885612 + MER1B DNA MER1_type 133 338 -1 2309 116 0 0 chr13 43859554 43859856 -75885042 + AluSx SINE Alu 5 306 -6 2294 100 37 0 chr13 43859883 43860183 -75884715 + AluSp SINE Alu 1 311 -2 1812 134 3 55 chr13 43860242 43860549 -75884349 + AluJo SINE Alu 6 296 -16 24 32 0 0 chr13 43860725 43860756 -75884142 + AT_rich Low_complexity Low_complexity 1 31 0 439 252 59 51 chr13 43860786 43861040 -75883858 + HAL1 LINE L1 1331 1586 -921 2621 53 0 0 chr13 43863764 43864067 -75880831 - AluY SINE Alu -8 303 1 1273 104 0 0 chr13 43864166 43864329 -75880569 - AluSp SINE Alu -17 296 134 1115 144 39 11 chr13 43865061 43865242 -75879656 + AluJo SINE Alu 117 302 -10 237 33 0 0 chr13 43865602 43865632 -75879266 + (CA)n Simple_repeat Simple_repeat 2 31 0 218 54 0 27 chr13 43865942 43865979 -75878919 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3479 245 106 14 chr13 43866172 43867976 -75876922 + L1MEc LINE L1 1732 3964 -2251 655 153 69 28 chr13 43868192 43868336 -75876562 + MIR SINE MIR 3 152 -110 2394 105 0 0 chr13 43869489 43869793 -75875105 - AluSx SINE Alu -8 304 1 185 220 271 0 chr13 43869801 43869860 -75875038 + MIR3 SINE MIR 109 183 -25 2204 118 10 0 chr13 43870391 43870696 -75874202 - AluSx SINE Alu -4 308 1 2885 0 0 0 chr13 43871454 43871755 -75873143 - AluYa5 SINE Alu -10 301 1 1951 147 0 7 chr13 43872610 43872902 -75871996 - AluSx SINE Alu -22 290 1 198 304 72 56 chr13 43873618 43873743 -75871155 - MIR SINE MIR -129 133 7 267 217 50 0 chr13 43873827 43873887 -75871011 + L2 LINE L2 1732 1794 -1520 2190 136 18 0 chr13 43873897 43874227 -75870671 - Tigger1 DNA MER2_type -4 2414 2079 343 281 98 37 chr13 43874227 43874391 -75870507 + L2 LINE L2 2955 3128 -185 1881 128 82 0 chr13 43874397 43874679 -75870219 - AluSx SINE Alu -7 305 1 4628 159 122 93 chr13 43874825 43875394 -75869504 - L1MD3 LINE L1 0 7995 7444 604 170 45 0 chr13 43875394 43875506 -75869392 - MLT1F1 LTR MaLR -445 122 6 4628 159 122 93 chr13 43875506 43876080 -75868818 - L1MD3 LINE L1 -551 7444 6705 207 0 0 0 chr13 43876266 43876289 -75868609 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1443 110 57 48 chr13 43877986 43878116 -75866782 + MER30 DNA MER1_type 1 135 -95 2625 30 7 3 chr13 43878116 43878420 -75866478 + AluY SINE Alu 1 305 -6 1443 110 57 48 chr13 43878420 43878517 -75866381 + MER30 DNA MER1_type 135 230 0 3157 129 30 55 chr13 43878596 43879137 -75865761 - MER1A DNA MER1_type 0 527 1 43 35 0 0 chr13 43879268 43879325 -75865573 + AT_rich Low_complexity Low_complexity 1 57 0 2242 128 0 0 chr13 43879460 43879766 -75865132 - AluSq SINE Alu -7 306 1 187 309 18 0 chr13 43880429 43880484 -75864414 + MIR SINE MIR 34 89 -173 368 127 0 0 chr13 43880496 43880551 -75864347 + MADE1 DNA Mariner 1 55 -25 226 296 207 7 chr13 43880552 43880687 -75864211 + MIR SINE MIR 101 262 0 205 301 98 16 chr13 43880706 43880829 -75864069 - L3 LINE CR1 -767 810 678 310 256 25 25 chr13 43882052 43882173 -75862725 + MER104 DNA Tc2 11 131 -49 2320 119 0 0 chr13 43882174 43882484 -75862414 - AluSg SINE Alu 0 310 1 2185 104 7 0 chr13 43882532 43882821 -75862077 - AluSx SINE Alu -21 291 1 1856 138 51 3 chr13 43883035 43883331 -75861567 + AluSq SINE Alu 1 310 -3 190 278 211 50 chr13 43883548 43883728 -75861170 + MIR SINE MIR 48 256 -6 500 212 66 47 chr13 43884338 43884557 -75860341 + L1ME1 LINE L1 2179 2359 -3856 * 558 242 45 0 chr13 43884547 43884704 -75860194 - L1M4 LINE L1 -1236 4910 4747 3014 179 78 0 chr13 43884741 43885295 -75859603 + MER7C DNA MER2_type 1 597 -5 858 234 97 42 chr13 43885392 43886052 -75858846 - L1M4 LINE L1 -1576 4570 3712 766 255 5 15 chr13 43886063 43886267 -75858631 - L1M4 LINE L1 -3651 2495 2294 585 255 68 36 chr13 43886266 43886544 -75858354 + L1ME1 LINE L1 4975 5261 -954 * 2694 265 42 23 chr13 43886528 43887259 -75857639 + L1MEc LINE L1 22 771 -5625 2360 107 44 41 chr13 43887259 43887622 -75857276 + THE1B LTR MaLR 1 364 0 2694 265 42 23 chr13 43887622 43887679 -75857219 + L1MEc LINE L1 771 825 -5571 2024 82 0 4 chr13 43887692 43887984 -75856914 + AluSc SINE Alu 25 315 0 274 234 85 43 chr13 43888356 43888450 -75856448 + MER5C DNA MER1_type 1 98 -226 2280 119 0 0 chr13 43888559 43888869 -75856029 - AluSx SINE Alu -2 310 1 2083 116 3 14 chr13 43888953 43889270 -75855628 + AluSx SINE Alu 8 312 0 1920 103 84 4 chr13 43889504 43889777 -75855121 + AluSg SINE Alu 1 295 -15 437 233 206 0 chr13 43890678 43890858 -75854040 + L3b LINE CR1 1117 1333 -250 202 260 179 32 chr13 43891089 43891212 -75853686 + L3b LINE CR1 1326 1466 -117 2181 118 7 3 chr13 43892924 43893230 -75851668 - AluSx SINE Alu -5 307 1 2266 201 77 23 chr13 43894347 43894909 -75849989 + L1ME1 LINE L1 5641 6232 -3 194 339 0 0 chr13 43896742 43896801 -75848097 - L2 LINE L2 -2506 808 750 1127 189 9 9 chr13 43896803 43897020 -75847878 - AluJo SINE Alu -9 303 87 789 324 119 31 chr13 43897240 43897940 -75846958 + L2 LINE L2 1927 2687 -627 631 188 8 34 chr13 43898537 43898798 -75846100 + GA-rich Low_complexity Low_complexity 1 253 0 1551 139 175 75 chr13 43898933 43899321 -75845577 - MSTC LTR MaLR -1 427 1 225 263 0 0 chr13 43899422 43899479 -75845419 - L2 LINE L2 -5 3308 3252 2067 125 14 0 chr13 43900021 43900308 -75844590 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr13 43901942 43901963 -75842935 + AT_rich Low_complexity Low_complexity 1 21 0 1197 125 60 10 chr13 43903440 43903640 -75841258 + Tigger2 DNA MER2_type 1 210 -2508 792 194 93 0 chr13 43903641 43903780 -75841118 + Tigger2 DNA MER2_type 2566 2717 -1 2215 108 3 3 chr13 43903784 43904089 -75840809 + AluSx SINE Alu 1 305 -7 29 0 0 0 chr13 43904446 43904475 -75840423 + AT_rich Low_complexity Low_complexity 1 29 0 1750 187 0 3 chr13 43904979 43905262 -75839636 + AluJo SINE Alu 1 282 -30 800 160 8 0 chr13 43905282 43905407 -75839491 - FLAM_C SINE Alu -6 127 2 1463 117 5 31 chr13 43905422 43905644 -75839254 - AluSq SINE Alu -12 301 86 333 138 0 0 chr13 43905745 43905803 -75839095 + Alu SINE Alu 244 301 -1 * 807 197 111 20 chr13 43905800 43905998 -75838900 + MSTD LTR MaLR 181 396 0 2059 150 0 3 chr13 43906346 43906659 -75838239 + AluSx SINE Alu 1 312 0 2964 58 0 0 chr13 43906697 43907042 -75837856 - L1PA3 LINE L1 -1 6154 5810 1043 238 91 9 chr13 43907090 43907409 -75837489 + L2 LINE L2 2193 2537 -777 3346 155 68 4 chr13 43907410 43907958 -75836940 + Tigger1 DNA MER2_type 2 584 -1834 795 222 14 0 chr13 43907962 43908106 -75836792 - FRAM SINE Alu -29 147 2 2922 97 11 36 chr13 43908139 43908397 -75836501 + Tigger1 DNA MER2_type 1495 1739 -679 2355 79 0 7 chr13 43908397 43908702 -75836196 + AluY SINE Alu 1 303 -8 2922 97 11 36 chr13 43908702 43908887 -75836011 + Tigger1 DNA MER2_type 1739 1927 -491 1186 154 13 60 chr13 43908887 43909083 -75835815 - AluJo SINE Alu -89 223 38 2122 118 16 10 chr13 43909083 43909389 -75835509 + AluSq SINE Alu 1 308 -5 1186 154 13 60 chr13 43909389 43909426 -75835472 - AluJo SINE Alu -274 38 1 731 113 77 186 chr13 43909426 43909647 -75835251 + Tigger1 DNA MER2_type 2220 2416 -2 1040 246 151 22 chr13 43909650 43910126 -75834772 + L2 LINE L2 2537 3128 -185 1778 103 0 109 chr13 43910126 43910465 -75834433 + AluSg1 SINE Alu 1 302 -7 1040 246 151 22 chr13 43910465 43910673 -75834225 + L2 LINE L2 3128 3308 -5 300 68 0 0 chr13 43910713 43910757 -75834141 + Tigger1 DNA MER2_type 1884 1927 -491 727 153 24 8 chr13 43910757 43910881 -75834017 - AluJo SINE Alu -89 223 98 245 316 223 14 chr13 43911945 43912160 -75832738 - MIR SINE MIR -1 261 2 291 280 42 109 chr13 43912342 43912535 -75832363 + L2 LINE L2 2986 3165 -107 2174 100 7 3 chr13 43912795 43913095 -75831803 + AluSx SINE Alu 1 301 -11 2498 67 0 0 chr13 43913155 43913452 -75831446 + AluSc SINE Alu 1 297 -12 1436 232 183 35 chr13 43913731 43914777 -75830121 - L1ME3A LINE L1 -168 6002 4809 * 4284 143 42 35 chr13 43914763 43915342 -75829556 - L1MB3 LINE L1 0 6183 5596 1614 105 23 139 chr13 43915342 43915686 -75829212 + AluYb8 SINE Alu 1 304 -14 4284 143 42 35 chr13 43915686 43915939 -75828959 - L1MB3 LINE L1 -587 5596 5346 1916 134 67 0 chr13 43915943 43916227 -75828671 + AluJo SINE Alu 1 303 -9 1603 56 15 10 chr13 43916289 43916486 -75828412 + AluSp SINE Alu 1 198 -115 221 378 73 7 chr13 43916492 43916643 -75828255 + L2 LINE L2 2882 3042 -230 2363 82 7 0 chr13 43916844 43917138 -75827760 - AluSp SINE Alu -15 298 3 196 353 63 19 chr13 43917145 43917158 -75827740 + L2 LINE L2 1988 1999 -1315 306 0 0 0 chr13 43917158 43917192 -75827706 + (CA)n Simple_repeat Simple_repeat 2 35 0 196 353 63 19 chr13 43917192 43917385 -75827513 + L2 LINE L2 1999 2203 -1111 512 204 0 0 chr13 43917593 43917681 -75827217 - MER81 DNA DNA -26 88 1 417 222 205 0 chr13 43917697 43917814 -75827084 - MER5A DNA MER1_type 0 189 49 189 94 0 0 chr13 43917814 43917846 -75827052 + (CTG)n Simple_repeat Simple_repeat 3 34 0 260 295 131 25 chr13 43917904 43918026 -75826872 + L2 LINE L2 3160 3294 -19 2009 165 0 0 chr13 43918061 43918358 -75826540 + AluJo SINE Alu 1 297 -15 406 328 231 20 chr13 43918610 43919553 -75825345 + L2 LINE L2 1024 3053 -219 330 95 0 0 chr13 43919627 43919669 -75825229 - Cheshire DNA MER1_type -2 2418 2377 250 304 0 63 chr13 43919669 43919748 -75825150 - MER2 DNA MER2_type 0 345 272 327 135 0 122 chr13 43919766 43919840 -75825058 - MER2 DNA MER2_type -280 65 1 1234 199 65 7 chr13 43919840 43920117 -75824781 - Cheshire DNA MER1_type -42 2378 2086 2322 101 0 0 chr13 43920443 43920739 -75824159 - AluSc SINE Alu -13 296 1 1392 186 18 46 chr13 43920998 43921278 -75823620 + AluJo SINE Alu 3 274 -38 207 139 0 0 chr13 43921278 43921314 -75823584 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr13 43921380 43921412 -75823486 + AT_rich Low_complexity Low_complexity 1 32 0 2691 93 14 3 chr13 43921887 43922251 -75822647 + THE1C LTR MaLR 8 375 0 551 310 35 58 chr13 43922251 43922539 -75822359 + L2 LINE L2 2264 2550 -764 2325 102 3 0 chr13 43922539 43922842 -75822056 - AluSx SINE Alu -8 304 1 551 310 35 58 chr13 43922842 43922900 -75821998 + L2 LINE L2 2550 2608 -706 2010 160 6 3 chr13 43923011 43923329 -75821569 + 7SLRNA srpRNA srpRNA 1 319 -1 1033 224 32 5 chr13 43923371 43923590 -75821308 - MIR SINE MIR -7 255 31 438 247 238 23 chr13 43923566 43923891 -75821007 + L2 LINE L2 2772 3177 -136 * 875 282 62 0 chr13 43923954 43924195 -75820703 + MIR SINE MIR 7 262 0 318 329 41 41 chr13 43924258 43924404 -75820494 + MER5A DNA MER1_type 41 186 -3 216 86 0 0 chr13 43924802 43924837 -75820061 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1571 172 0 34 chr13 43925518 43925814 -75819084 - AluJb SINE Alu -21 291 6 2239 137 0 3 chr13 43925950 43926263 -75818635 - AluSx SINE Alu 0 312 1 2316 101 0 3 chr13 43926606 43926912 -75817986 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr13 43926985 43927006 -75817892 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 43927084 43927109 -75817789 + (ATG)n Simple_repeat Simple_repeat 1 25 0 242 282 56 28 chr13 43927459 43927530 -75817368 - MIR SINE MIR -115 93 21 258 314 27 96 chr13 43927563 43927751 -75817147 + MIR SINE MIR 82 256 -6 525 190 127 7 chr13 43927957 43928099 -75816799 + MER58C DNA MER1_type 56 214 -1 30 27 0 0 chr13 43928733 43928770 -75816128 + AT_rich Low_complexity Low_complexity 1 37 0 286 330 32 21 chr13 43928860 43928954 -75815944 + MIR3 SINE MIR 4 98 -110 358 366 119 8 chr13 43930244 43930479 -75814419 - MIR SINE MIR 0 262 2 216 260 0 0 chr13 43930616 43930666 -75814232 - L2 LINE L2 0 3313 3264 1026 270 162 42 chr13 43930681 43931411 -75813487 + L2 LINE L2 2497 3313 0 264 356 64 75 chr13 43931406 43931566 -75813332 - L2 LINE L2 -76 3196 3036 * 1967 134 10 3 chr13 43931566 43931873 -75813025 + AluJo SINE Alu 1 309 -3 264 356 64 75 chr13 43931873 43932088 -75812810 - L2 LINE L2 -236 3036 2825 294 225 42 0 chr13 43932133 43932204 -75812694 + MIR SINE MIR 119 192 -70 2618 75 21 16 chr13 43932213 43932586 -75812312 - THE1C LTR MaLR 0 375 1 534 334 60 63 chr13 43932736 43933167 -75811731 + L1MEd LINE L1 12 441 -5678 279 228 19 152 chr13 43933168 43933379 -75811519 + L1MC4 LINE L1 7860 8042 0 255 277 96 11 chr13 43933737 43933831 -75811067 - MIR SINE MIR -2 260 159 445 274 59 113 chr13 43933955 43934363 -75810535 - MLT1L LTR MaLR -62 553 168 349 313 0 10 chr13 43934552 43934651 -75810247 - MIR SINE MIR -99 163 66 216 301 36 12 chr13 43935332 43935415 -75809483 + MIR SINE MIR 111 195 -67 426 302 62 17 chr13 43936664 43936843 -75808055 - MIR SINE MIR -70 192 6 2318 98 0 3 chr13 43937033 43937339 -75807559 + AluSx SINE Alu 1 305 -7 1539 134 90 60 chr13 43937495 43937794 -75807104 - AluJo SINE Alu -4 308 1 2480 71 0 0 chr13 43938980 43939274 -75805624 + AluY SINE Alu 3 296 -15 951 128 0 0 chr13 43939745 43940023 -75804875 + (TA)n Simple_repeat Simple_repeat 1 278 0 1984 132 3 3 chr13 43940023 43940310 -75804588 - AluSx SINE Alu -25 287 1 408 225 0 110 chr13 43940313 43940514 -75804384 - L1 LINE L1 -1817 4329 4151 2270 100 13 0 chr13 43940742 43941042 -75803856 - AluSx SINE Alu -7 305 2 21 0 0 0 chr13 43941118 43941139 -75803759 + AT_rich Low_complexity Low_complexity 1 21 0 783 182 0 0 chr13 43941317 43941438 -75803460 + FLAM_A SINE Alu 1 121 -12 630 247 133 0 chr13 43942366 43942516 -75802382 + FRAM SINE Alu 1 170 -6 409 164 35 17 chr13 43942553 43942669 -75802229 + L1M4 LINE L1 2894 3011 -3135 1159 228 101 68 chr13 43942733 43943289 -75801609 + L1ME2 LINE L1 5581 6154 -10 1518 180 3 40 chr13 43943612 43943912 -75800986 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr13 43943913 43943935 -75800963 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 43944086 43944111 -75800787 + AT_rich Low_complexity Low_complexity 1 25 0 202 318 35 12 chr13 43944858 43944943 -75799955 - MER5A DNA MER1_type -42 147 61 549 0 0 0 chr13 43945009 43945070 -75799828 + (TG)n Simple_repeat Simple_repeat 2 62 0 423 0 0 0 chr13 43945124 43945171 -75799727 + (TG)n Simple_repeat Simple_repeat 2 48 0 2048 121 3 17 chr13 43945171 43945460 -75799438 - AluSx SINE Alu -27 285 1 1947 106 39 3 chr13 43945508 43945790 -75799108 + AluSg SINE Alu 1 292 -18 645 237 46 62 chr13 43945806 43945888 -75799010 - Charlie2a DNA MER1_type -611 2251 2169 794 106 0 0 chr13 43945888 43946001 -75798897 + L1PB3 LINE L1 6040 6152 -2 645 237 46 62 chr13 43946001 43946243 -75798655 - Charlie2a DNA MER1_type -693 2169 1932 229 247 67 45 chr13 43946285 43946374 -75798524 + MIR SINE MIR 124 214 -48 * 379 278 57 52 chr13 43946364 43946576 -75798322 - MIR SINE MIR -2 260 48 2364 81 7 0 chr13 43946635 43946931 -75797967 - AluSp SINE Alu -15 298 1 691 191 391 14 chr13 43946978 43947323 -75797575 - Charlie2a DNA MER1_type -915 1947 1473 1077 257 74 33 chr13 43947359 43947971 -75796927 - Charlie2b DNA MER1_type -2116 666 1 28 29 0 0 chr13 43948961 43948996 -75795902 + AT_rich Low_complexity Low_complexity 1 35 0 1806 159 28 10 chr13 43949343 43949633 -75795265 + AluJo SINE Alu 1 295 -17 2208 102 0 35 chr13 43949638 43949952 -75794946 + AluSx SINE Alu 10 312 0 22 56 0 0 chr13 43950637 43950673 -75794225 + AT_rich Low_complexity Low_complexity 1 36 0 2152 117 0 19 chr13 43951228 43951545 -75793353 - AluSx SINE Alu -1 311 1 2286 102 0 0 chr13 43951735 43952047 -75792851 + AluSq SINE Alu 1 312 0 1836 68 4 8 chr13 43953394 43953629 -75791269 + AluSx SINE Alu 64 297 -15 189 0 0 0 chr13 43954528 43954549 -75790349 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 405 255 122 0 chr13 43954711 43954809 -75790089 - L2 LINE L2 -1 3271 3162 406 277 164 38 chr13 43954815 43955162 -75789736 - L2 LINE L2 -49 3264 2874 209 344 0 16 chr13 43955221 43955282 -75789616 - L2 LINE L2 -182 3090 3031 1771 87 4 0 chr13 43955300 43955530 -75789368 - AluSg/x SINE Alu 0 312 82 2532 46 0 0 chr13 43955530 43955831 -75789067 - AluY SINE Alu -9 302 1 520 314 51 11 chr13 43956276 43956451 -75788447 + MER5A DNA MER1_type 8 189 0 747 183 0 8 chr13 43956461 43956592 -75788306 + AluJb SINE Alu 4 133 -179 1783 150 6 38 chr13 43957238 43957558 -75787340 + AluJo SINE Alu 1 310 -2 180 250 54 18 chr13 43958005 43958061 -75786837 - L3 LINE CR1 -586 991 934 357 179 40 168 chr13 43958523 43958997 -75785901 - MER5A DNA MER1_type 0 189 39 1985 146 17 7 chr13 43958603 43958905 -75785993 - AluSx SINE Alu -7 305 1 322 194 59 182 chr13 43958905 43959019 -75785879 + MER5A DNA MER1_type 97 185 -4 492 206 11 0 chr13 43959187 43959279 -75785619 + LTR67 LTR ERVL 92 184 -373 389 329 81 14 chr13 43959568 43959778 -75785120 + MIR SINE MIR 5 228 -34 320 195 23 46 chr13 43959885 43959960 -75784938 - MLT1K LTR MaLR -11 577 503 1458 153 71 46 chr13 43959960 43960103 -75784795 + AluJo SINE Alu 1 139 -173 2366 90 3 0 chr13 43960103 43960413 -75784485 + AluY SINE Alu 1 311 0 1458 153 71 46 chr13 43960413 43960550 -75784348 + AluJo SINE Alu 139 288 -24 320 195 23 46 chr13 43960550 43960561 -75784337 - MLT1K LTR MaLR -85 503 493 189 232 0 0 chr13 43960577 43960646 -75784252 + A-rich Low_complexity Low_complexity 1 69 0 1184 302 58 14 chr13 43960653 43961136 -75783762 - MLT1K LTR MaLR -71 517 14 278 232 29 14 chr13 43961899 43961968 -75782930 - MLT1K LTR MaLR -505 83 14 2091 133 0 0 chr13 43962171 43962465 -75782433 + AluSx SINE Alu 1 294 -18 2128 124 7 3 chr13 43962781 43963080 -75781818 + AluSx SINE Alu 1 300 -12 200 268 207 0 chr13 43963170 43963252 -75781646 - L2 LINE L2 -10 3303 3205 1804 159 0 26 chr13 43963790 43964092 -75780806 + AluJb SINE Alu 1 294 -18 2018 116 7 0 chr13 43964810 43965086 -75779812 + AluSq SINE Alu 1 278 -35 207 0 0 0 chr13 43965092 43965115 -75779783 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 231 263 93 25 chr13 43965170 43965288 -75779610 + L1M4 LINE L1 4877 5002 -1144 1933 137 3 0 chr13 43965292 43965577 -75779321 - AluSx SINE Alu -18 294 9 2271 104 3 0 chr13 43965713 43966012 -75778886 + AluSp SINE Alu 6 305 -8 348 247 86 46 chr13 43966016 43966243 -75778655 + L1M4 LINE L1 5121 5372 -784 2138 110 31 0 chr13 43966279 43966569 -75778329 - AluSg SINE Alu -9 301 3 234 338 130 56 chr13 43967424 43967458 -75777440 + L2 LINE L2 3004 3034 -238 2453 47 0 13 chr13 43967458 43967757 -75777141 + AluY SINE Alu 2 296 -15 234 338 130 56 chr13 43967757 43967953 -75776945 + L2 LINE L2 3034 3251 -21 405 216 56 40 chr13 43969470 43969595 -75775303 + MIR SINE MIR 54 180 -82 1520 188 34 13 chr13 43969762 43970060 -75774838 + AluJb SINE Alu 1 304 -8 1016 227 44 0 chr13 43970118 43970347 -75774551 - MIR SINE MIR -19 243 5 1878 100 55 11 chr13 43970696 43971003 -75773895 - AluSx SINE Alu 0 319 1 674 49 0 0 chr13 43971209 43971332 -75773566 - AluY SINE Alu 0 323 201 222 260 140 25 chr13 43971354 43971554 -75773344 + L2 LINE L2 1940 2162 -1152 2324 91 3 0 chr13 43972660 43972957 -75771941 - AluSx SINE Alu -14 298 1 231 167 48 0 chr13 43972960 43973002 -75771896 + MIR3 SINE MIR 154 197 -11 265 350 133 32 chr13 43973198 43973507 -75771391 - L2 LINE L2 0 3272 2933 1850 156 7 13 chr13 43973749 43974051 -75770847 - AluJo SINE Alu -1 311 12 594 191 28 14 chr13 43974847 43974988 -75769910 - LTR67 LTR ERVL -13 544 402 769 122 122 47 chr13 43975372 43975397 -75769501 + MER53 DNA DNA 5 27 -162 2052 146 0 3 chr13 43975397 43975692 -75769206 + AluSx SINE Alu 1 294 -18 769 122 122 47 chr13 43975692 43975838 -75769060 + MER53 DNA DNA 27 189 0 269 290 109 36 chr13 43976764 43976957 -75767941 + L2 LINE L2 2885 3091 -181 445 243 171 43 chr13 43977040 43977250 -75767648 + MLT1J LTR MaLR 40 276 -235 1819 123 4 19 chr13 43977413 43977537 -75767361 - AluSx SINE Alu -56 256 132 2169 116 17 3 chr13 43977537 43977839 -75767059 - AluSq SINE Alu -7 306 1 1819 123 4 19 chr13 43977839 43977974 -75766924 - AluSx SINE Alu -180 132 1 1562 117 0 5 chr13 43978244 43978449 -75766449 - AluSx SINE Alu -108 204 1 2279 104 3 28 chr13 43978774 43978809 -75766089 - AluSx SINE Alu -2 310 276 216 0 0 0 chr13 43978809 43978833 -75766065 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2279 104 3 28 chr13 43978833 43979115 -75765783 - AluSx SINE Alu -36 276 1 2092 133 7 3 chr13 43979367 43979660 -75765238 + AluSx SINE Alu 1 294 -18 515 272 153 40 chr13 43979665 43979966 -75764932 - L1MC4a LINE L1 -1895 5913 5579 421 271 43 29 chr13 43980463 43980603 -75764295 - L2 LINE L2 0 3313 3172 2272 185 40 2 chr13 43980632 43981076 -75763822 - L1MB3 LINE L1 -3 6180 5720 1161 129 77 138 chr13 43981095 43981272 -75763626 + AluJo SINE Alu 1 152 -160 967 111 0 183 chr13 43981272 43981507 -75763391 + 7SK RNA RNA 2 193 0 1161 129 77 138 chr13 43981507 43981640 -75763258 + AluJo SINE Alu 152 292 -20 702 160 0 38 chr13 43981861 43981992 -75762906 + AluJo/FLAM SINE Alu 1 126 -176 1293 173 0 5 chr13 43981992 43982206 -75762692 + AluJb SINE Alu 88 300 -12 2181 119 10 3 chr13 43982456 43982766 -75762132 + AluSx SINE Alu 1 312 0 2482 66 13 0 chr13 43983004 43983306 -75761592 - AluY SINE Alu -5 306 1 1784 158 3 7 chr13 43983777 43984091 -75760807 - AluJb SINE Alu 0 313 1 554 220 8 0 chr13 43984450 43984568 -75760330 + FLAM_A SINE Alu 4 122 -11 458 272 18 78 chr13 43984708 43984781 -75760117 + L2 LINE L2 2236 2312 -1002 2302 92 0 0 chr13 43984781 43985108 -75759790 - AluSq SINE Alu 0 327 1 458 272 18 78 chr13 43985108 43985250 -75759648 + L2 LINE L2 2312 2439 -875 182 289 97 26 chr13 43985249 43985363 -75759535 + L2 LINE L2 2915 3036 -236 * 933 109 92 27 chr13 43985702 43985875 -75759023 + L1M3 LINE L1 5428 5615 -556 2374 84 0 3 chr13 43985875 43986172 -75758726 + AluY SINE Alu 1 296 -15 2041 142 0 0 chr13 43986247 43986543 -75758355 - AluSx SINE Alu -16 296 1 189 94 0 0 chr13 43986548 43986580 -75758318 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 488 72 14 0 chr13 43986580 43986649 -75758249 - MER41A LTR ERV1 -86 468 399 957 105 8 0 chr13 43986696 43986820 -75758078 - FLAM_C SINE Alu -16 127 3 1513 183 84 44 chr13 43986929 43987312 -75757586 + L1MC4 LINE L1 7475 7872 -170 283 164 206 0 chr13 43987433 43987506 -75757392 + L1MC4 LINE L1 7919 8006 -36 2081 153 0 3 chr13 43987506 43987814 -75757084 - AluJb SINE Alu -5 307 1 1780 167 10 22 chr13 43987915 43988227 -75756671 + AluJb SINE Alu 1 308 -4 445 93 13 0 chr13 43988333 43988408 -75756490 + AluSp/q SINE Alu 232 307 -6 246 311 58 0 chr13 43988507 43988610 -75756288 - LTR67 LTR ERVL -18 539 431 2213 109 3 3 chr13 43989033 43989326 -75755572 + AluSx SINE Alu 6 298 -14 328 177 4 4 chr13 43989332 43989404 -75755494 - Alu SINE Alu -253 49 1 2176 134 0 3 chr13 43989749 43990062 -75754836 - AluSx SINE Alu 0 312 1 892 146 28 7 chr13 43991085 43991229 -75753669 + FRAM SINE Alu 11 157 -19 2008 127 38 0 chr13 43991229 43991520 -75753378 + AluSx SINE Alu 1 302 -10 585 214 18 0 chr13 43991645 43991757 -75753141 + FLAM_A SINE Alu 2 115 -18 1605 147 114 0 chr13 43991757 43992029 -75752869 - AluJb SINE Alu -9 303 1 1006 185 19 38 chr13 43992029 43992240 -75752658 - AluJb SINE Alu -10 302 96 3613 201 33 64 chr13 43992340 43992520 -75752378 + L1ME1 LINE L1 4847 5031 -1303 2096 115 7 33 chr13 43992520 43992824 -75752074 + AluSx SINE Alu 1 296 -16 3613 201 33 64 chr13 43992824 43992906 -75751992 + L1ME1 LINE L1 5031 5114 -1220 1422 175 48 28 chr13 43992906 43993197 -75751701 - AluJo SINE Alu -15 297 1 3613 201 33 64 chr13 43993197 43993343 -75751555 + L1ME1 LINE L1 5114 5263 -1071 2455 93 0 6 chr13 43993343 43993655 -75751243 + AluSg SINE Alu 1 310 0 3613 201 33 64 chr13 43993655 43994269 -75750629 + L1ME1 LINE L1 5263 5964 -370 1240 156 107 52 chr13 43994269 43994558 -75750340 + AluJb SINE Alu 1 305 -7 3613 201 33 64 chr13 43994558 43994918 -75749980 + L1ME1 LINE L1 5964 6334 0 2225 123 0 0 chr13 43994934 43995226 -75749672 + AluSx SINE Alu 1 292 -20 1757 141 0 11 chr13 43996172 43996442 -75748456 - AluSx SINE Alu -45 267 1 268 214 22 11 chr13 43996444 43996513 -75748385 + (TTTA)n Simple_repeat Simple_repeat 1 68 -331 1830 142 4 4 chr13 43996513 43996780 -75748118 - AluJb SINE Alu -45 267 1 268 214 22 11 chr13 43996780 43996839 -75748059 + (TTTA)n Simple_repeat Simple_repeat 68 399 0 1240 180 43 31 chr13 43997613 43997868 -75747030 - MLT1A2 LTR MaLR -92 282 25 612 256 33 56 chr13 43997900 43998115 -75746783 + LTR16A LTR ERVL 229 438 -12 299 206 75 109 chr13 43998157 43998303 -75746595 - MIR SINE MIR -51 211 77 2210 141 0 0 chr13 43998303 43998615 -75746283 + AluSx SINE Alu 1 312 0 299 206 75 109 chr13 43998615 43998655 -75746243 - MIR SINE MIR -185 77 37 357 24 0 0 chr13 43999266 43999308 -75745590 + (CA)n Simple_repeat Simple_repeat 2 43 0 26 74 0 0 chr13 43999671 43999725 -75745173 + AT_rich Low_complexity Low_complexity 1 54 0 1753 85 0 5 chr13 44000196 44000420 -75744478 - AluSc SINE Alu -4 305 83 951 301 76 22 chr13 44000614 44001022 -75743876 + L2 LINE L2 2883 3312 -1 2645 50 0 0 chr13 44001052 44001351 -75743547 + AluY SINE Alu 1 299 -12 353 284 11 11 chr13 44001354 44001449 -75743449 - MER5A DNA MER1_type -80 109 15 1791 172 7 3 chr13 44001449 44001751 -75743147 - AluJb SINE Alu -9 303 1 1935 142 0 43 chr13 44001823 44002125 -75742773 - AluSx SINE Alu -23 289 1 1439 202 73 89 chr13 44002312 44003217 -75741681 - LTR28 LTR ERV1 0 1020 1 1898 159 10 3 chr13 44003239 44003528 -75741370 - AluSx SINE Alu -21 291 1 2935 136 39 53 chr13 44003540 44004083 -75740815 - MER4D LTR ERV1 -368 535 1 305 173 25 49 chr13 44004086 44004167 -75740731 - MER92C LTR ERV1 -274 280 202 903 152 0 0 chr13 44004242 44004374 -75740524 + AluSg/x SINE Alu 165 296 -16 2064 114 11 32 chr13 44004374 44004422 -75740476 + MER4B LTR ERV1 313 360 -250 1116 166 257 4 chr13 44004422 44004663 -75740235 - AluJo SINE Alu 0 302 1 2064 114 11 32 chr13 44004663 44004819 -75740079 + MER4B LTR ERV1 360 436 -174 2012 119 57 33 chr13 44004819 44005154 -75739744 - MER61A LTR ERV1 0 343 1 2064 114 11 32 chr13 44005154 44005326 -75739572 + MER4B LTR ERV1 436 610 0 756 221 133 29 chr13 44005326 44005550 -75739348 + MER92C LTR ERV1 280 528 -26 183 42 0 0 chr13 44005550 44005574 -75739324 + (GA)n Simple_repeat Simple_repeat 2 25 0 583 245 40 44 chr13 44005578 44005760 -75739138 - MLT1F1 LTR MaLR -401 189 4 243 0 0 0 chr13 44006129 44006156 -75738742 + (A)n Simple_repeat Simple_repeat 1 27 0 2375 74 0 0 chr13 44006578 44006885 -75738013 - AluSq SINE Alu 0 307 1 1264 84 0 0 chr13 44007475 44007630 -75737268 + AluSg/x SINE Alu 132 286 -26 750 189 31 70 chr13 44007926 44008154 -75736744 + L1MC5 LINE L1 7144 7362 -599 2058 131 0 22 chr13 44008163 44008475 -75736423 + AluSx SINE Alu 1 305 -7 2108 93 29 0 chr13 44008475 44008753 -75736145 + AluSx SINE Alu 1 286 -26 330 240 10 31 chr13 44008859 44008955 -75735943 + AluSg/x SINE Alu 208 301 -1 452 301 16 27 chr13 44009724 44009910 -75734988 - MER5A DNA MER1_type 0 189 6 2094 146 3 7 chr13 44010026 44010335 -75734563 + AluJb SINE Alu 1 308 -4 227 333 40 0 chr13 44010663 44010762 -75734136 + MIR SINE MIR 141 243 -19 206 139 28 0 chr13 44011068 44011104 -75733794 + (CA)n Simple_repeat Simple_repeat 2 38 0 913 127 0 8 chr13 44011350 44011484 -75733414 - FLAM_C SINE Alu 0 133 1 809 204 18 24 chr13 44011492 44011659 -75733239 - FRAM SINE Alu 0 166 1 236 309 25 12 chr13 44011868 44011949 -75732949 - L2 LINE L2 -5 3267 3186 260 0 0 0 chr13 44011953 44011985 -75732913 + L1MA9 LINE L1 6274 6305 -7 266 306 39 105 chr13 44011999 44012362 -75732536 - L2 LINE L2 -107 3165 2827 263 289 128 50 chr13 44014068 44014248 -75730650 + L2 LINE L2 3120 3313 0 2281 108 0 10 chr13 44014831 44015137 -75729761 + AluSg SINE Alu 1 303 -7 529 119 0 48 chr13 44015485 44015569 -75729329 + AluSg/x SINE Alu 215 294 -18 952 119 0 179 chr13 44015571 44015806 -75729092 + 7SK RNA RNA 1 193 0 1972 152 0 7 chr13 44015823 44016125 -75728773 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr13 44016267 44016288 -75728610 + AT_rich Low_complexity Low_complexity 1 21 0 1058 75 8 0 chr13 44016616 44016750 -75728148 - AluSq SINE Alu -69 244 110 24 0 0 0 chr13 44016943 44016967 -75727931 + AT_rich Low_complexity Low_complexity 1 24 0 1472 162 0 0 chr13 44017025 44017254 -75727644 + AluSg SINE Alu 64 292 -18 1839 158 3 7 chr13 44017254 44017561 -75727337 - AluJo SINE Alu 0 307 2 2123 124 0 3 chr13 44017889 44018179 -75726719 - AluJb SINE Alu -23 289 1 687 270 146 39 chr13 44018341 44018820 -75726078 - L2 LINE L2 -49 3264 2744 798 264 80 8 chr13 44018831 44019070 -75725828 + MIR SINE MIR 2 257 -5 3076 248 52 22 chr13 44019076 44019640 -75725258 - L2 LINE L2 -568 2746 2140 1896 63 178 0 chr13 44019640 44019893 -75725005 + AluSp SINE Alu 1 298 -15 3076 248 52 22 chr13 44019893 44020293 -75724605 - L2 LINE L2 -1174 2140 1753 1850 168 27 0 chr13 44020293 44020591 -75724307 + AluJb SINE Alu 1 306 -6 553 222 111 0 chr13 44020645 44020789 -75724109 + MIR SINE MIR 66 225 -37 1519 268 45 28 chr13 44020797 44021260 -75723638 - MLT1E LTR MaLR 0 593 123 1260 237 122 86 chr13 44021297 44021959 -75722939 - L2 LINE L2 -1720 1594 909 480 248 19 73 chr13 44021966 44022172 -75722726 + LTR4 LTR ERV1 2 196 -400 890 216 28 39 chr13 44022347 44022629 -75722269 + LTR4 LTR ERV1 318 596 0 303 216 45 9 chr13 44022629 44022740 -75722158 - L2 LINE L2 -2401 913 799 725 303 192 2 chr13 44022824 44023246 -75721652 + MLT1K LTR MaLR 76 577 -11 294 297 216 0 chr13 44023415 44023600 -75721298 + MIR SINE MIR 3 227 -35 2150 128 0 3 chr13 44023623 44023919 -75720979 - AluSx SINE Alu -13 299 5 2062 88 81 0 chr13 44023954 44024227 -75720671 - AluSg SINE Alu -15 295 1 183 216 114 91 chr13 44024451 44024539 -75720359 - MIR SINE MIR 0 262 173 1030 235 49 4 chr13 44024689 44024936 -75719962 + MIR SINE MIR 1 258 -4 260 324 39 0 chr13 44026000 44026102 -75718796 + L2 LINE L2 1803 1908 -1406 529 198 40 16 chr13 44026106 44026232 -75718666 - MLT1H LTR MaLR -2 547 419 545 229 78 42 chr13 44026302 44026494 -75718404 - MLT1H LTR MaLR -278 271 73 198 0 0 0 chr13 44026509 44026531 -75718367 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 713 97 29 0 chr13 44026532 44026635 -75718263 - U6 snRNA snRNA -1 106 1 1022 215 85 17 chr13 44026657 44026950 -75717948 + L2 LINE L2 1903 2215 -1099 1967 148 0 0 chr13 44027329 44027620 -75717278 - AluSx SINE Alu -21 291 1 854 262 55 61 chr13 44028140 44028483 -75716415 + L2 LINE L2 2946 3286 -27 1025 155 34 19 chr13 44028511 44028718 -75716180 + MER2 DNA MER2_type 1 210 -135 884 188 6 29 chr13 44028756 44028926 -75715972 - AluJo SINE Alu -146 166 1 309 258 0 0 chr13 44028935 44029001 -75715897 + MER2 DNA MER2_type 280 345 0 267 298 29 39 chr13 44029077 44029181 -75715717 + MIR SINE MIR 39 141 -67 234 343 0 29 chr13 44030217 44030322 -75714576 + MIR SINE MIR 111 212 -50 446 209 26 17 chr13 44030670 44030785 -75714113 - MER94 DNA DNA 0 134 19 2264 99 0 3 chr13 44031449 44031742 -75713156 - AluSx SINE Alu -20 292 1 790 320 84 36 chr13 44032069 44032460 -75712438 + L3 LINE CR1 845 1254 -323 519 236 174 0 chr13 44032603 44032747 -75712151 + MIR SINE MIR 2 170 -92 1956 158 0 3 chr13 44033246 44033538 -75711360 + AluSq SINE Alu 3 293 -20 2082 42 72 8 chr13 44033698 44033983 -75710915 - AluY SINE Alu 0 334 33 386 354 25 19 chr13 44034229 44034387 -75710511 + L3 LINE CR1 1009 1167 -410 1626 223 89 16 chr13 44034541 44034989 -75709909 - L1MC4 LINE L1 -1097 6945 6465 1797 187 0 10 chr13 44035488 44035793 -75709105 + AluJb SINE Alu 1 302 -10 366 222 10 10 chr13 44036786 44036885 -75708013 - Charlie8 DNA MER1_type -2212 205 107 245 217 33 0 chr13 44036920 44036980 -75707918 - MER103 DNA DNA -54 112 51 247 241 114 108 chr13 44037236 44037394 -75707504 + L2 LINE L2 3153 3311 -2 197 395 81 16 chr13 44037450 44037698 -75707200 + L2 LINE L2 2618 2881 -433 23 0 0 0 chr13 44038070 44038093 -75706805 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 44038252 44038278 -75706620 + AT_rich Low_complexity Low_complexity 1 26 0 1700 160 67 27 chr13 44038437 44038737 -75706161 + AluJb SINE Alu 1 312 0 279 280 91 23 chr13 44039804 44039936 -75704962 - L2 LINE L2 0 3313 3173 1094 123 0 0 chr13 44039971 44040117 -75704781 - AluSq/x SINE Alu -167 146 1 1984 152 15 0 chr13 44040255 44040590 -75704308 - L1PA16 LINE L1 -13 6153 5814 843 199 78 0 chr13 44040629 44040795 -75704103 - FAM SINE Alu -5 44 1 23 68 0 0 chr13 44040868 44040912 -75703986 + AT_rich Low_complexity Low_complexity 1 44 0 2393 86 3 0 chr13 44041185 44041488 -75703410 - AluSp SINE Alu -9 304 1 2423 42 3 29 chr13 44042285 44042591 -75702307 - AluY SINE Alu -13 298 1 191 190 52 17 chr13 44042840 44042898 -75702000 - L2 LINE L2 0 3313 3254 2271 116 3 0 chr13 44042973 44043276 -75701622 + AluSx SINE Alu 3 306 -6 352 271 181 8 chr13 44043903 44044036 -75700862 + MIR SINE MIR 107 262 0 816 142 47 0 chr13 44045247 44045374 -75699524 - FLAM_A SINE Alu 0 133 1 294 275 34 67 chr13 44045922 44046071 -75698827 - L2 LINE L2 -798 2516 2373 1248 263 77 40 chr13 44046131 44046835 -75698063 - L2 LINE L2 -1 3312 2567 1273 135 5 54 chr13 44046937 44047159 -75697739 - AluJo SINE Alu -101 211 1 2150 119 42 31 chr13 44047373 44047733 -75697165 + THE1B LTR MaLR 1 364 0 954 111 0 0 chr13 44048663 44048798 -75696100 - AluSx SINE Alu -9 301 167 342 68 232 4 chr13 44048808 44048877 -75696021 + AluSq/x SINE Alu 62 133 -169 1081 133 6 6 chr13 44048883 44049048 -75695850 - AluSx SINE Alu -147 165 1 231 175 0 0 chr13 44049354 44049394 -75695504 - Charlie1a DNA MER1_type -1 1454 1415 5055 196 43 29 chr13 44049425 44050642 -75694256 - Charlie1a DNA MER1_type -220 1235 2 2226 98 0 3 chr13 44050835 44051131 -75693767 + AluSq SINE Alu 1 295 -18 344 308 0 17 chr13 44051285 44051402 -75693496 - MIR SINE MIR -55 207 93 308 229 114 9 chr13 44052062 44052167 -75692731 - L1MC4 LINE L1 0 8042 7927 1566 102 0 5 chr13 44052613 44052828 -75692070 + AluSg/x SINE Alu 84 297 -13 24 32 0 0 chr13 44052875 44052906 -75691992 + AT_rich Low_complexity Low_complexity 1 31 0 1252 158 0 0 chr13 44053147 44053324 -75691574 + AluSx SINE Alu 1 177 -135 1575 135 9 0 chr13 44053342 44053572 -75691326 + AluSg/x SINE Alu 68 299 -11 1554 190 39 7 chr13 44053728 44054012 -75690886 + AluJb SINE Alu 1 293 -19 22 35 0 0 chr13 44054529 44054558 -75690340 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr13 44054586 44054608 -75690290 + (TA)n Simple_repeat Simple_repeat 2 23 0 457 186 0 0 chr13 44054608 44054678 -75690220 - AluS SINE Alu -17 294 225 625 216 22 89 chr13 44054879 44055079 -75689819 - L1MC5 LINE L1 -48 7913 7740 2454 87 0 0 chr13 44055079 44055388 -75689510 - AluSq SINE Alu -4 309 1 625 216 22 89 chr13 44055388 44055502 -75689396 - L1MC5 LINE L1 -221 7740 7620 1562 123 57 104 chr13 44056507 44056671 -75688227 - AluSx SINE Alu -10 302 159 2354 83 0 10 chr13 44056671 44056973 -75687925 - AluSc SINE Alu -10 299 1 1562 123 57 104 chr13 44056973 44057125 -75687773 - AluSx SINE Alu -153 159 1 37 0 0 0 chr13 44057471 44057508 -75687390 + AT_rich Low_complexity Low_complexity 1 37 0 735 112 9 0 chr13 44057739 44057846 -75687052 - AluSq/x SINE Alu -201 111 4 1565 139 57 60 chr13 44057852 44058220 -75686678 + MLT1B LTR MaLR 24 390 0 425 197 31 8 chr13 44058322 44058449 -75686449 - L1ME3A LINE L1 -5 6165 6036 23 33 0 0 chr13 44058679 44058709 -75686189 + AT_rich Low_complexity Low_complexity 1 30 0 1606 178 56 14 chr13 44058720 44059006 -75685892 - AluJo SINE Alu -14 298 1 2066 127 33 3 chr13 44059764 44060063 -75684835 - AluSx SINE Alu -4 308 1 2401 153 59 20 chr13 44060310 44060952 -75683946 - L1MB8 LINE L1 -9 6169 5413 2237 180 156 32 chr13 44061141 44061819 -75683079 - L1MB8 LINE L1 -845 5301 4540 3157 186 41 55 chr13 44061903 44062114 -75682784 - L1MD2 LINE L1 -1 6358 6145 243 0 0 0 chr13 44062114 44062141 -75682757 + (TG)n Simple_repeat Simple_repeat 2 28 0 3157 186 41 55 chr13 44062141 44062357 -75682541 - L1MD2 LINE L1 -214 6145 5927 2596 62 0 0 chr13 44062357 44062661 -75682237 - AluY SINE Alu -7 304 1 3157 186 41 55 chr13 44062661 44063044 -75681854 - L1MD2 LINE L1 -432 5927 5559 228 122 0 0 chr13 44063626 44063667 -75681231 + (CA)n Simple_repeat Simple_repeat 2 42 0 2043 100 3 7 chr13 44066036 44066335 -75678563 + L1PA12 LINE L1 5871 6168 0 21 71 0 0 chr13 44066427 44066469 -75678429 + AT_rich Low_complexity Low_complexity 1 42 0 212 323 0 16 chr13 44066472 44066534 -75678364 + L2 LINE L2 3248 3308 -5 1623 178 7 26 chr13 44068135 44068498 -75676400 - AluJb SINE Alu 0 357 1 1482 154 12 20 chr13 44068575 44068821 -75676077 + AluJo SINE Alu 1 244 -68 22 0 0 0 chr13 44068830 44068852 -75676046 + AT_rich Low_complexity Low_complexity 1 22 0 303 360 10 0 chr13 44068917 44069017 -75675881 - MIR SINE MIR -150 112 12 612 195 8 16 chr13 44069046 44069174 -75675724 + FLAM_A SINE Alu 4 130 -3 2359 195 21 87 chr13 44069296 44069698 -75675200 - MLT1E3 LTR MaLR 0 624 280 2382 111 0 0 chr13 44069698 44070005 -75674893 - AluSx SINE Alu -5 307 1 2359 195 21 87 chr13 44070005 44070254 -75674644 - MLT1E3 LTR MaLR -344 280 16 227 54 27 0 chr13 44071045 44071082 -75673816 + (TA)n Simple_repeat Simple_repeat 2 39 0 599 141 0 0 chr13 44071096 44071195 -75673703 + L1P5 LINE L1 5705 5803 -353 329 186 58 12 chr13 44071175 44071261 -75673637 + L1M4 LINE L1 3362 3451 -2695 * 654 221 15 36 chr13 44072063 44072258 -75672640 - L1MC5 LINE L1 -44 7917 7727 521 187 0 22 chr13 44072273 44072364 -75672534 + AluJ/FLAM SINE Alu 3 91 -221 1896 130 42 3 chr13 44072510 44072794 -75672104 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr13 44074940 44074962 -75669936 + AT_rich Low_complexity Low_complexity 1 22 0 45 104 0 0 chr13 44075139 44075303 -75669595 + AT_rich Low_complexity Low_complexity 1 164 0 35 63 0 0 chr13 44075484 44075547 -75669351 + AT_rich Low_complexity Low_complexity 1 63 0 883 272 91 33 chr13 44075705 44076296 -75668602 - L1ME LINE L1 -539 5903 5256 2015 133 9 19 chr13 44076296 44076611 -75668287 - AluSx SINE Alu 0 312 1 883 272 91 33 chr13 44076611 44076820 -75668078 - L1ME LINE L1 -1186 5256 5061 3015 165 17 4 chr13 44076864 44077338 -75667560 + Tigger7 DNA MER2_type 32 511 -222 615 276 111 42 chr13 44077401 44078027 -75666871 - L1MEd LINE L1 -4859 1567 1015 1116 225 65 98 chr13 44078263 44078721 -75666177 - MLT1H LTR MaLR -23 526 84 366 267 23 30 chr13 44078864 44078995 -75665903 + MER94 DNA DNA 5 134 0 277 281 134 61 chr13 44079361 44079838 -75665060 - HAL1b LINE L1 -252 1096 585 34 42 0 0 chr13 44080211 44080259 -75664639 + AT_rich Low_complexity Low_complexity 1 48 0 859 144 7 7 chr13 44080403 44080542 -75664356 + AluJb SINE Alu 3 141 -171 33 66 0 0 chr13 44080949 44081010 -75663888 + AT_rich Low_complexity Low_complexity 1 61 0 1274 133 225 4 chr13 44081681 44081921 -75662977 - AluSg1 SINE Alu -16 293 1 386 254 231 8 chr13 44082631 44082765 -75662133 + MIR SINE MIR 2 165 -97 854 268 131 40 chr13 44082790 44083219 -75661679 - MLT1J LTR MaLR -43 468 1 234 260 10 73 chr13 44083221 44083317 -75661581 + MIR SINE MIR 161 250 -12 1741 150 11 11 chr13 44083372 44083646 -75661252 - AluSx SINE Alu -4 308 35 914 121 8 8 chr13 44083922 44084054 -75660844 - FRAM SINE Alu -21 155 24 1585 162 20 40 chr13 44084342 44084644 -75660254 - AluJb SINE Alu -16 296 1 906 135 195 0 chr13 44085067 44085252 -75659646 + L1MA8 LINE L1 6066 6286 -5 2203 118 0 0 chr13 44085502 44085798 -75659100 - AluSx SINE Alu -16 296 1 2222 108 0 16 chr13 44085800 44086114 -75658784 - AluSg SINE Alu -1 309 1 24 0 0 0 chr13 44086141 44086165 -75658733 + AT_rich Low_complexity Low_complexity 1 24 0 883 146 0 0 chr13 44086631 44086754 -75658144 + FLAM_C SINE Alu 1 123 -20 38 0 0 0 chr13 44086755 44086793 -75658105 + AT_rich Low_complexity Low_complexity 1 38 0 1994 142 10 3 chr13 44087433 44087729 -75657169 - AluSx SINE Alu -14 298 1 489 279 49 44 chr13 44088084 44088288 -75656610 - MIR SINE MIR -50 212 8 6028 62 11 1 chr13 44088432 44089159 -75655739 - L1PA6 LINE L1 -1 6153 5420 224 333 82 53 chr13 44089678 44089885 -75655013 + L2 LINE L2 2845 3057 -215 296 250 188 0 chr13 44090019 44090131 -75654767 - MER112 DNA MER1_type -97 163 31 248 277 67 42 chr13 44090177 44090224 -75654674 + L2 LINE L2 3151 3195 -77 291 93 0 0 chr13 44090224 44090267 -75654631 + (CA)n Simple_repeat Simple_repeat 2 44 0 248 277 67 42 chr13 44090267 44090338 -75654560 + L2 LINE L2 3195 3272 0 505 257 107 27 chr13 44090815 44091002 -75653896 + MIR SINE MIR 42 243 -19 216 232 111 61 chr13 44091632 44091731 -75653167 + MIR SINE MIR 41 144 -64 722 240 36 58 chr13 44093005 44093223 -75651675 - MLT1A1 LTR MaLR 0 374 160 2268 97 7 16 chr13 44093223 44093533 -75651365 - AluSq SINE Alu -6 307 1 369 0 0 0 chr13 44093539 44093580 -75651318 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1510 144 67 42 chr13 44093639 44093923 -75650975 - AluJo SINE Alu 0 312 22 928 150 6 12 chr13 44093952 44094112 -75650786 - MLT1A1 LTR MaLR -206 159 1 257 265 36 0 chr13 44094241 44094324 -75650574 - L2 LINE L2 -111 3202 3117 2123 106 3 7 chr13 44094694 44094987 -75649911 + AluSx SINE Alu 1 292 -20 232 177 21 125 chr13 44094988 44095084 -75649814 + L1MCa LINE L1 1995 2080 -4346 492 297 53 65 chr13 44095097 44095405 -75649493 + L1MCa LINE L1 2434 2739 -3687 2301 98 166 5 chr13 44095405 44095772 -75649126 - MSTA LTR MaLR 0 428 3 492 297 53 65 chr13 44095772 44095803 -75649095 + L1MCa LINE L1 2739 2769 -3657 1301 79 6 0 chr13 44095843 44096007 -75648891 - AluSp SINE Alu -13 300 136 647 83 9 46 chr13 44096008 44096117 -75648781 + MER11A LTR ERVK 1161 1265 -1 514 235 10 0 chr13 44096141 44096239 -75648659 - L2 LINE L2 -6 3307 3209 392 270 59 2 chr13 44096239 44096387 -75648511 + L1ME1 LINE L1 5940 6104 -74 322 306 118 12 chr13 44096393 44096638 -75648260 - L2 LINE L2 -108 3205 2935 397 289 93 61 chr13 44096675 44096693 -75648205 + L1MCa LINE L1 3352 3368 -3058 2242 112 7 0 chr13 44096693 44096996 -75647902 + AluSg SINE Alu 1 305 -5 397 289 93 61 chr13 44096996 44097243 -75647655 + L1MCa LINE L1 3368 3605 -2821 2440 80 0 0 chr13 44097243 44097545 -75647353 + AluSc SINE Alu 1 302 -7 397 289 93 61 chr13 44097545 44097952 -75646946 + L1MCa LINE L1 3605 4047 -2379 2440 90 0 0 chr13 44097988 44098289 -75646609 + AluSc SINE Alu 1 301 -8 1146 125 0 28 chr13 44098289 44098456 -75646442 + AluSg/x SINE Alu 136 299 -13 1571 195 42 0 chr13 44098525 44098812 -75646086 + AluJb SINE Alu 1 299 -13 848 237 31 77 chr13 44098892 44099206 -75645692 + L1MC4a LINE L1 5543 5694 -468 2288 99 7 3 chr13 44099206 44099509 -75645389 + AluSq SINE Alu 1 304 -9 848 237 31 77 chr13 44099509 44099624 -75645274 + L1MC4a LINE L1 5694 5813 -349 1776 140 51 10 chr13 44100318 44100610 -75644288 + AluSx SINE Alu 1 304 -8 212 373 27 27 chr13 44100698 44100848 -75644050 - L2 LINE L2 -498 2816 2667 224 0 65 0 chr13 44101788 44101819 -75643079 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 818 169 0 15 chr13 44101998 44102128 -75642770 - FLAM_C SINE Alu -3 130 3 1013 223 125 75 chr13 44103124 44103326 -75641572 + MLT1D LTR MaLR 1 191 -314 2094 111 20 7 chr13 44103326 44103623 -75641275 + AluSx SINE Alu 1 301 -11 1013 223 125 75 chr13 44103623 44103650 -75641248 + MLT1D LTR MaLR 191 215 -290 2119 128 3 0 chr13 44103650 44103948 -75640950 + AluSx SINE Alu 1 299 -13 1013 223 125 75 chr13 44103948 44104198 -75640700 + MLT1D LTR MaLR 215 505 0 275 304 43 9 chr13 44104198 44104313 -75640585 + L2 LINE L2 2966 3084 -188 2146 109 0 0 chr13 44104890 44105208 -75639690 + AluSx SINE Alu 1 318 0 276 308 78 67 chr13 44105667 44105785 -75639113 + L1ME LINE L1 5531 5646 -475 1895 164 3 3 chr13 44105785 44106072 -75638826 + AluJb SINE Alu 1 287 -25 276 308 78 67 chr13 44106072 44106297 -75638601 + L1ME LINE L1 5646 5878 -243 333 295 75 75 chr13 44106713 44106777 -75638121 + L2 LINE L2 2650 2713 -601 2046 137 6 10 chr13 44106777 44107090 -75637808 + AluSx SINE Alu 1 312 0 333 295 75 75 chr13 44107090 44107293 -75637605 + L2 LINE L2 2712 2917 -397 1915 176 52 55 chr13 44107722 44107838 -75637060 - MLT1C LTR MaLR -4 463 348 2265 86 0 0 chr13 44107838 44108141 -75636757 + AluSg SINE Alu 1 303 0 1915 176 52 55 chr13 44108141 44108482 -75636416 - MLT1C LTR MaLR -119 348 6 1521 133 4 9 chr13 44108552 44108777 -75636121 - AluSx SINE Alu -88 224 1 423 200 0 0 chr13 44108827 44108902 -75635996 - MLT1A1 LTR MaLR 0 365 291 1011 126 0 0 chr13 44108902 44109037 -75635861 + AluSq/x SINE Alu 1 135 -178 2100 104 3 42 chr13 44109037 44109346 -75635552 + AluSg SINE Alu 1 297 -13 1190 246 63 0 chr13 44109346 44109614 -75635284 - MLT1A1 LTR MaLR -79 286 2 1428 192 23 23 chr13 44109983 44110143 -75634755 - AluJo SINE Alu -5 307 145 2090 120 23 3 chr13 44110143 44110442 -75634456 - AluSg SINE Alu -5 305 1 1428 192 23 23 chr13 44110442 44110583 -75634315 - AluJo SINE Alu -166 146 6 1838 147 3 11 chr13 44110852 44111167 -75633731 - AluSx SINE Alu 0 313 1 362 193 67 80 chr13 44111268 44111418 -75633480 + L1MC5 LINE L1 7507 7654 -307 863 85 0 0 chr13 44111418 44111524 -75633374 + AluSp SINE Alu 1 106 -207 25 51 0 0 chr13 44112565 44112604 -75632294 + AT_rich Low_complexity Low_complexity 1 39 0 1934 136 0 33 chr13 44114262 44114564 -75630334 + AluSx SINE Alu 1 292 -20 1786 156 3 35 chr13 44114567 44114882 -75630016 + AluJb SINE Alu 1 305 -7 245 299 9 169 chr13 44115344 44115575 -75629323 + L2 LINE L2 3027 3220 -52 2378 92 0 0 chr13 44115654 44115957 -75628941 + AluSg SINE Alu 2 304 -6 789 241 64 15 chr13 44116077 44116452 -75628446 + LTR16A LTR ERVL 7 450 0 2274 92 0 25 chr13 44116581 44116898 -75628000 + AluSc SINE Alu 1 309 0 299 284 23 0 chr13 44116974 44117062 -75627836 + MIR SINE MIR 90 179 -83 1029 110 0 85 chr13 44117222 44117338 -75627560 + AluSq/x SINE Alu 1 101 -211 2124 133 0 3 chr13 44117338 44117647 -75627251 + AluSg SINE Alu 1 308 -2 1029 110 0 85 chr13 44117647 44117694 -75627204 + AluSq/x SINE Alu 101 150 -162 739 87 0 0 chr13 44117694 44117786 -75627112 - AluS SINE Alu -220 93 2 1030 119 0 179 chr13 44117804 44118039 -75626859 - 7SK RNA RNA 0 193 1 522 143 0 48 chr13 44118041 44118125 -75626773 - AluSg/x SINE Alu -18 292 213 22 0 0 0 chr13 44119100 44119122 -75625776 + AT_rich Low_complexity Low_complexity 1 22 0 37 0 0 0 chr13 44121658 44121695 -75623203 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr13 44121944 44121966 -75622932 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 808 169 0 0 chr13 44122247 44122371 -75622527 - AluJb SINE Alu -188 124 1 183 381 79 8 chr13 44122641 44122767 -75622131 - MIR3 SINE MIR -38 170 36 1891 147 0 39 chr13 44123630 44123942 -75620956 + AluSx SINE Alu 1 300 -12 565 195 47 13 chr13 44126426 44126575 -75618323 + MER104 DNA Tc2 25 178 -2 23 33 0 0 chr13 44126715 44126745 -75618153 + AT_rich Low_complexity Low_complexity 1 30 0 1323 167 126 15 chr13 44126745 44127008 -75617890 - AluJo SINE Alu -19 293 2 442 272 105 25 chr13 44127866 44128028 -75616870 - MIR3 SINE MIR -23 185 11 236 183 33 50 chr13 44128116 44128176 -75616722 - MLT1K LTR MaLR -10 578 520 2155 103 0 0 chr13 44128520 44128821 -75616077 + AluSx SINE Alu 1 301 0 1956 120 0 31 chr13 44129086 44129401 -75615497 + AluSx SINE Alu 1 306 0 1661 173 0 28 chr13 44129517 44129800 -75615098 - AluSx SINE Alu -37 275 1 603 193 0 52 chr13 44130309 44130444 -75614454 + Charlie1 DNA MER1_type 1 128 -2633 241 218 69 11 chr13 44130443 44130530 -75614368 + Charlie1 DNA MER1_type 2625 2716 -45 * 518 123 38 0 chr13 44130565 44130671 -75614227 - L1MA7 LINE L1 -2 6289 6180 270 279 81 9 chr13 44130706 44130817 -75614081 + L2 LINE L2 3193 3311 -2 23 33 0 0 chr13 44130945 44130975 -75613923 + AT_rich Low_complexity Low_complexity 1 30 0 1601 124 161 24 chr13 44131528 44131858 -75613040 - THE1C LTR MaLR 0 375 1 2173 112 3 3 chr13 44131930 44132233 -75612665 - AluSc SINE Alu -6 303 1 26 50 0 0 chr13 44132456 44132496 -75612402 + AT_rich Low_complexity Low_complexity 1 40 0 407 290 57 0 chr13 44132760 44132884 -75612014 + L2 LINE L2 3137 3267 -5 387 41 0 0 chr13 44133410 44133459 -75611439 + (CA)n Simple_repeat Simple_repeat 1 49 0 1376 189 128 4 chr13 44134290 44134555 -75610343 + AluSx SINE Alu 1 298 -14 382 321 0 9 chr13 44134871 44134980 -75609918 - L2 LINE L2 -19 3294 3187 941 131 199 0 chr13 44135612 44135843 -75609055 + Tigger3(Golem) DNA MER2_type 54 3029 0 2081 255 83 65 chr13 44136084 44137135 -75607763 + L2 LINE L2 2246 3313 0 239 354 157 22 chr13 44137121 44137440 -75607458 - L2 LINE L2 -450 2864 2503 * 22 35 0 0 chr13 44137777 44137806 -75607092 + AT_rich Low_complexity Low_complexity 1 29 0 889 134 0 0 chr13 44137840 44137984 -75606914 - FLAM_C SINE Alu 0 144 1 2203 99 7 0 chr13 44138002 44138296 -75606602 - AluSp SINE Alu -12 301 6 290 138 17 0 chr13 44138372 44138430 -75606468 + (CA)n Simple_repeat Simple_repeat 2 60 0 960 137 6 19 chr13 44138840 44139156 -75605742 - AluSq SINE Alu 0 439 126 2051 137 0 0 chr13 44139157 44139457 -75605441 - AluSx SINE Alu -12 300 1 234 0 0 0 chr13 44139460 44139486 -75605412 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2281 97 0 3 chr13 44139490 44139790 -75605108 - AluY SINE Alu -8 303 5 231 236 36 0 chr13 44139986 44140041 -75604857 + L2 LINE L2 3179 3235 -78 238 203 17 34 chr13 44140041 44140100 -75604798 + CT-rich Low_complexity Low_complexity 3 60 0 22 0 0 0 chr13 44140187 44140209 -75604689 + AT_rich Low_complexity Low_complexity 1 22 0 593 206 125 25 chr13 44141488 44141648 -75603250 + MER46A DNA MER2_type 1 176 -60 334 197 0 0 chr13 44141684 44141745 -75603153 + MER94 DNA DNA 1 61 -73 2086 112 14 7 chr13 44141893 44142188 -75602710 + AluSx SINE Alu 1 297 -15 1442 136 140 11 chr13 44142385 44142650 -75602248 + AluJb SINE Alu 1 299 -13 1979 140 3 7 chr13 44142925 44143233 -75601665 - AluSx SINE Alu -5 307 1 183 358 8 41 chr13 44143285 44143408 -75601490 + L2 LINE L2 2831 2949 -323 2327 97 0 0 chr13 44143434 44143732 -75601166 + AluSg1 SINE Alu 1 298 -11 229 200 127 0 chr13 44143872 44143927 -75600971 + L2 LINE L2 3137 3198 -74 521 206 0 10 chr13 44144714 44144811 -75600087 - MER91B DNA MER1_type -4 186 91 242 174 217 0 chr13 44144828 44144897 -75600001 - MER91B DNA MER1_type -60 130 47 413 310 35 9 chr13 44145599 44145712 -75599186 - MIR SINE MIR -116 146 31 441 297 8 31 chr13 44146417 44146545 -75598353 + L2 LINE L2 3188 3312 -1 234 302 0 0 chr13 44146705 44146758 -75598140 - L2 LINE L2 0 3313 3261 764 244 84 65 chr13 44147321 44147349 -75597549 + L2 LINE L2 2178 2204 -1110 351 44 0 0 chr13 44147349 44147394 -75597504 + (TG)n Simple_repeat Simple_repeat 2 46 0 764 244 84 65 chr13 44147394 44147734 -75597164 + L2 LINE L2 2204 2553 -761 784 219 16 44 chr13 44147773 44147845 -75597053 - MER45A DNA AcHobo -1403 178 106 428 120 13 0 chr13 44147845 44147920 -75596978 + L1PB2 LINE L1 6069 6144 -7 784 219 16 44 chr13 44147920 44148030 -75596868 - MER45A DNA AcHobo -1475 106 1 577 324 168 34 chr13 44148030 44148644 -75596254 + L2 LINE L2 2606 3313 0 198 333 204 0 chr13 44149087 44149180 -75595718 - L2 LINE L2 -7 3265 3154 686 174 25 8 chr13 44149289 44149410 -75595488 + AluJ SINE Alu 1 123 -179 912 170 19 22 chr13 44149459 44149702 -75595196 + AluJ SINE Alu 104 309 -3 299 310 60 0 chr13 44151303 44151403 -75593495 - L2 LINE L2 -9 3304 3199 608 286 11 27 chr13 44151409 44151594 -75593304 - MER5A DNA MER1_type -1 188 7 943 143 54 24 chr13 44151882 44152050 -75592848 + AluSq SINE Alu 134 306 -7 650 300 112 36 chr13 44152810 44153303 -75591595 - L1M4 LINE L1 -1250 4896 4367 1336 146 5 41 chr13 44153308 44153527 -75591371 + AluJb SINE Alu 84 294 -18 249 180 81 10 chr13 44153866 44153962 -75590936 + L1MA9 LINE L1 6213 6333 -1 264 48 0 0 chr13 44154699 44154741 -75590157 - AluSp/q SINE Alu -3 300 259 2352 97 3 0 chr13 44155085 44155385 -75589513 - AluSp SINE Alu -12 301 1 1520 88 0 5 chr13 44155406 44155598 -75589300 - AluSq SINE Alu -122 191 1 2309 107 0 7 chr13 44156349 44156658 -75588240 + AluSx SINE Alu 1 307 -5 2299 103 3 7 chr13 44157469 44157820 -75587078 - AluSg SINE Alu 0 350 1 2051 144 3 26 chr13 44158760 44159072 -75585826 + AluJo SINE Alu 1 305 -7 821 211 68 0 chr13 44159521 44159682 -75585216 + FAM SINE Alu 1 172 -3 1960 161 3 0 chr13 44160047 44160351 -75584547 + AluJb SINE Alu 1 305 -7 26 50 0 0 chr13 44160978 44161018 -75583880 + AT_rich Low_complexity Low_complexity 1 40 0 2291 86 23 7 chr13 44161185 44161487 -75583411 + AluSp SINE Alu 7 313 0 32 26 0 0 chr13 44161671 44161710 -75583188 + AT_rich Low_complexity Low_complexity 1 39 0 2048 117 3 49 chr13 44161995 44162320 -75582578 - AluSx SINE Alu -2 310 1 393 22 0 0 chr13 44162899 44162945 -75581953 + (CA)n Simple_repeat Simple_repeat 1 46 0 416 306 166 5 chr13 44163904 44164103 -75580795 - MIR SINE MIR 0 262 32 1883 154 0 3 chr13 44164364 44164670 -75580228 - AluSx SINE Alu 0 305 1 2513 83 3 0 chr13 44165078 44165390 -75579508 + AluSp SINE Alu 1 313 0 203 337 36 12 chr13 44166292 44166375 -75578523 + MIR SINE MIR 42 126 -82 234 0 0 0 chr13 44166517 44166543 -75578355 + (T)n Simple_repeat Simple_repeat 1 26 0 2284 110 0 0 chr13 44166961 44167261 -75577637 + AluSq SINE Alu 1 300 -13 1585 163 3 72 chr13 44167275 44167594 -75577304 + AluJb SINE Alu 3 299 -13 198 0 0 0 chr13 44167600 44167622 -75577276 + (TA)n Simple_repeat Simple_repeat 2 23 0 479 254 30 66 chr13 44167628 44167825 -75577073 + MER102b DNA MER1_type 149 338 -3 1007 163 58 0 chr13 44167830 44168020 -75576878 + MER3 DNA MER1_type 4 204 -5 192 265 217 24 chr13 44168222 44168305 -75576593 - L2 LINE L2 -18 3295 3197 222 37 0 0 chr13 44168669 44168696 -75576202 + (T)n Simple_repeat Simple_repeat 1 27 0 196 304 0 0 chr13 44169179 44169235 -75575663 - L2 LINE L2 0 3313 3258 1032 143 9 67 chr13 44169496 44169634 -75575264 + MER2 DNA MER2_type 1 123 -222 1854 144 37 18 chr13 44169634 44169961 -75574937 + MER1B DNA MER1_type 1 333 -4 1032 143 9 67 chr13 44169961 44170045 -75574853 + MER2 DNA MER2_type 123 210 -135 2306 104 0 0 chr13 44170077 44170376 -75574522 - AluSx SINE Alu -13 299 1 243 320 0 0 chr13 44170385 44170463 -75574435 + MER2 DNA MER2_type 268 345 0 253 242 21 63 chr13 44170768 44170863 -75574035 + MIR SINE MIR 172 262 0 2170 107 31 3 chr13 44171087 44171378 -75573520 - AluSx SINE Alu -13 299 1 2303 117 17 47 chr13 44171715 44172082 -75572816 - L1PB1 LINE L1 0 6151 5796 363 44 0 0 chr13 44172082 44172127 -75572771 + (TA)n Simple_repeat Simple_repeat 1 45 0 2303 117 17 47 chr13 44172127 44172162 -75572736 - L1PB1 LINE L1 -355 5796 5761 688 68 0 0 chr13 44172184 44172272 -75572626 + AluY SINE Alu 110 197 -114 2059 120 23 3 chr13 44172402 44172702 -75572196 - AluSg SINE Alu -4 306 1 2187 118 0 0 chr13 44172867 44173156 -75571742 - AluSg SINE Alu -21 289 1 241 91 18 18 chr13 44173411 44173466 -75571432 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2411 82 0 13 chr13 44173472 44173789 -75571109 - AluSq SINE Alu 0 313 1 24 53 0 0 chr13 44174366 44174404 -75570494 + AT_rich Low_complexity Low_complexity 1 38 0 1975 136 37 0 chr13 44175065 44175359 -75569539 - AluSx SINE Alu -7 305 1 333 286 13 0 chr13 44175545 44175622 -75569276 + L2 LINE L2 3234 3311 -2 1126 138 37 43 chr13 44177163 44177351 -75567547 - AluJb SINE Alu -19 293 107 378 177 0 0 chr13 44177384 44177446 -75567452 + MER3 DNA MER1_type 1 62 -147 2066 178 15 32 chr13 44178110 44178510 -75566388 + Tigger6 DNA MER2_type 1205 1597 0 2441 196 16 64 chr13 44178512 44178807 -75566091 + MER44D DNA MER2_type 1 311 -2176 2196 66 43 26 chr13 44178807 44179110 -75565788 + AluY SINE Alu 1 308 -3 2441 196 16 64 chr13 44179110 44179392 -75565506 + MER44D DNA MER2_type 311 605 0 617 268 142 0 chr13 44179486 44179691 -75565207 - MIR SINE MIR -27 235 2 2415 88 3 0 chr13 44179898 44180204 -75564694 + AluSq SINE Alu 1 307 -6 250 196 19 149 chr13 44180302 44180409 -75564489 - MER102a DNA MER1_type -15 315 223 616 267 79 0 chr13 44180895 44181097 -75563801 + L1ME LINE L1 5559 5776 -345 1182 257 137 40 chr13 44182656 44183227 -75561671 + Charlie7 DNA MER1_type 38 663 -1949 310 247 12 12 chr13 44183208 44183289 -75561609 - LTR33A LTR ERVL -4 519 439 * 343 262 0 49 chr13 44183558 44183680 -75561218 + Charlie7 DNA MER1_type 641 756 -1856 269 257 118 7 chr13 44183743 44183879 -75561019 + Charlie7 DNA MER1_type 2444 2594 -18 418 274 96 20 chr13 44184101 44184158 -75560740 - MER5B DNA MER1_type -5 173 122 2368 101 3 0 chr13 44184158 44184466 -75560432 + AluSq SINE Alu 1 309 -4 418 274 96 20 chr13 44184466 44184554 -75560344 - MER5B DNA MER1_type -56 122 17 1481 67 0 0 chr13 44184661 44184839 -75560059 - AluY SINE Alu -2 309 132 509 97 0 0 chr13 44184840 44184902 -75559996 - AluY SINE Alu -255 63 2 901 152 6 67 chr13 44185751 44185929 -75558969 + AluJo SINE Alu 1 167 -145 1643 118 0 0 chr13 44185930 44186150 -75558748 + AluSg/x SINE Alu 72 291 -19 2265 109 0 0 chr13 44186158 44186461 -75558437 + AluY SINE Alu 1 303 -8 1696 197 0 7 chr13 44187103 44187392 -75557506 + AluJo SINE Alu 1 287 -25 1724 156 32 0 chr13 44187450 44187732 -75557166 - AluJb SINE Alu -21 291 1 204 67 0 0 chr13 44187737 44187767 -75557131 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1561 154 71 11 chr13 44187773 44188039 -75556859 - AluJo SINE Alu -30 282 1 29 0 0 0 chr13 44188118 44188147 -75556751 + AT_rich Low_complexity Low_complexity 1 29 0 2549 51 0 3 chr13 44188245 44188541 -75556357 - AluY SINE Alu -16 295 1 596 146 0 3 chr13 44188577 44188694 -75556204 + LTR24 LTR ERV1 350 467 0 26 0 0 0 chr13 44189260 44189286 -75555612 + AT_rich Low_complexity Low_complexity 1 26 0 1898 124 54 10 chr13 44189286 44189584 -75555314 - AluSx SINE Alu -1 311 1 2460 81 0 0 chr13 44189992 44190287 -75554611 + AluSg SINE Alu 1 295 -15 2358 92 0 3 chr13 44191879 44192182 -75552716 + AluSq SINE Alu 1 302 -11 180 0 0 0 chr13 44192824 44192844 -75552054 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 44193688 44193709 -75551189 + AT_rich Low_complexity Low_complexity 1 21 0 302 314 50 0 chr13 44194649 44194744 -75550154 + MIR SINE MIR 7 106 -102 2245 110 7 0 chr13 44194844 44195143 -75549755 - AluSq SINE Alu -12 301 1 1886 159 212 17 chr13 44195329 44195687 -75549211 - MSTC LTR MaLR 0 428 1 2202 60 4 0 chr13 44196024 44196289 -75548609 + AluY SINE Alu 1 266 -45 1085 186 10 122 chr13 44196450 44196594 -75548304 - AluJo SINE Alu -50 262 166 2472 66 0 7 chr13 44196594 44196897 -75548001 - AluSg1 SINE Alu -8 301 1 1085 186 10 122 chr13 44196897 44197047 -75547851 - AluJo SINE Alu -146 166 1 1383 64 0 12 chr13 44197327 44197500 -75547398 - AluSg/x SINE Alu -13 297 127 1255 175 51 78 chr13 44197984 44197995 -75546903 - L1MB8 LINE L1 -34 6150 6140 2206 112 0 10 chr13 44197995 44198300 -75546598 - AluY SINE Alu -9 302 1 1255 175 51 78 chr13 44198300 44198330 -75546568 - L1MB8 LINE L1 -44 6140 6111 1434 166 121 11 chr13 44198330 44198595 -75546303 + AluJb SINE Alu 1 294 -18 1255 175 51 78 chr13 44198595 44198884 -75546014 - L1MB8 LINE L1 -73 6111 5828 461 214 56 0 chr13 44198884 44198973 -75545925 + MER2 DNA MER2_type 1 94 -251 207 0 0 0 chr13 44198973 44198996 -75545902 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5500 42 0 0 chr13 44198996 44199638 -75545260 - L1PA5 LINE L1 -22 6132 5491 1050 184 90 30 chr13 44199638 44199871 -75545027 + MER2 DNA MER2_type 99 345 0 1134 175 62 12 chr13 44199871 44200111 -75544787 - L1MB8 LINE L1 -355 5829 5578 2203 103 0 13 chr13 44200111 44200412 -75544486 - AluSq SINE Alu -16 297 1 2730 128 59 2 chr13 44200857 44201262 -75543636 - MSTA LTR MaLR 0 428 1 2321 110 3 0 chr13 44202483 44202793 -75542105 - AluSx SINE Alu 0 312 2 237 246 0 31 chr13 44202863 44202928 -75541970 + L2 LINE L2 3210 3272 0 2074 105 11 0 chr13 44203297 44203574 -75541324 + AluSp SINE Alu 1 280 -33 336 328 173 8 chr13 44203713 44204000 -75540898 - L2 LINE L2 -218 3054 2718 420 250 100 31 chr13 44205217 44205377 -75539521 - MER5A DNA MER1_type -12 177 7 2293 70 11 7 chr13 44205588 44205874 -75539024 + AluSq SINE Alu 1 287 -26 24 32 0 0 chr13 44205874 44205905 -75538993 + AT_rich Low_complexity Low_complexity 1 31 0 2354 105 0 0 chr13 44206171 44206476 -75538422 - AluSq SINE Alu -8 305 1 2110 104 0 17 chr13 44209068 44209380 -75535518 - AluSx SINE Alu 0 307 1 2217 92 7 3 chr13 44209619 44209913 -75534985 - AluY SINE Alu -16 295 1 2033 122 4 0 chr13 44210006 44210284 -75534614 + AluSg SINE Alu 1 279 -31 1426 97 0 5 chr13 44210355 44210541 -75534357 - AluSp SINE Alu -17 296 112 231 167 0 0 chr13 44210583 44210625 -75534273 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 324 154 0 92 chr13 44210628 44210693 -75534205 - Charlie1 DNA MER1_type -2702 59 1 2042 103 21 4 chr13 44211541 44211822 -75533076 + AluSx SINE Alu 19 304 -8 228 304 139 0 chr13 44211971 44212086 -75532812 - MIR SINE MIR 0 262 132 2223 79 0 7 chr13 44212451 44212730 -75532168 + AluSc SINE Alu 1 277 -32 2040 113 21 0 chr13 44212971 44213253 -75531645 - AluSq SINE Alu 0 313 26 1744 169 3 29 chr13 44213298 44213605 -75531293 - AluJo SINE Alu -13 299 1 1840 109 11 8 chr13 44213613 44213899 -75530999 - AluSc SINE Alu 0 303 17 590 125 0 0 chr13 44213903 44213983 -75530915 + AluSg/x SINE Alu 217 296 -16 2392 81 0 0 chr13 44214020 44214316 -75530582 - AluY SINE Alu -15 296 1 2149 77 4 0 chr13 44215102 44215361 -75529537 + AluSp SINE Alu 31 290 -23 617 310 10 10 chr13 44215463 44215663 -75529235 - MIR SINE MIR 0 262 63 210 293 17 0 chr13 44216162 44216220 -75528678 - L2 LINE L2 -54 3218 3160 534 249 68 34 chr13 44216323 44216500 -75528398 + MIR SINE MIR 79 261 -1 201 360 32 32 chr13 44216509 44216634 -75528264 - L2 LINE L2 -179 3093 2969 1113 172 48 171 chr13 44217724 44218033 -75526865 + L1ME1 LINE L1 5217 5432 -1092 2052 120 0 7 chr13 44218033 44218332 -75526566 - AluSx SINE Alu -15 297 1 1113 172 48 171 chr13 44218332 44218578 -75526320 + L1ME1 LINE L1 5432 5707 -817 969 159 7 0 chr13 44218579 44218765 -75526133 - AluSq SINE Alu 0 320 134 2310 86 3 22 chr13 44218765 44218943 -75525955 - AluSg SINE Alu -2 308 137 2155 108 17 0 chr13 44218943 44219238 -75525660 - AluSp SINE Alu -13 300 1 2310 86 3 22 chr13 44219238 44219373 -75525525 - AluSg SINE Alu -173 137 1 500 188 0 10 chr13 44219374 44219475 -75525423 + L1ME1 LINE L1 5698 5797 -369 581 242 224 9 chr13 44219480 44219699 -75525199 + L1ME1 LINE L1 5876 6141 -25 2069 119 14 0 chr13 44219722 44220008 -75524890 + AluSx SINE Alu 3 292 -20 244 275 88 55 chr13 44220395 44220492 -75524406 + L1MC/D LINE L1 5725 5817 -1991 2341 78 7 0 chr13 44220492 44220785 -75524113 + AluSx SINE Alu 1 295 -17 244 275 88 55 chr13 44220785 44220869 -75524029 + L1MC/D LINE L1 5817 5912 -1896 2148 105 16 10 chr13 44221677 44221983 -75522915 + AluY SINE Alu 1 308 -3 1905 151 3 3 chr13 44223196 44223480 -75521418 + AluJo SINE Alu 3 286 -26 1215 186 46 8 chr13 44223486 44223723 -75521175 + AluSx SINE Alu 48 293 -19 1519 154 0 40 chr13 44224393 44224646 -75520252 - AluJb SINE Alu -64 248 6 201 227 80 0 chr13 44224969 44225021 -75519877 + L2 LINE L2 3213 3306 -7 2131 114 7 3 chr13 44225478 44225775 -75519123 + AluSq SINE Alu 1 298 -15 908 103 0 29 chr13 44225778 44225914 -75518984 + AluSg/x SINE Alu 178 309 -1 1557 154 116 16 chr13 44226274 44226592 -75518306 - MLT1A1 LTR MaLR 0 365 16 2340 100 0 3 chr13 44226592 44226892 -75518006 + AluSg SINE Alu 1 299 -11 192 77 0 0 chr13 44226960 44226986 -75517912 + (T)n Simple_repeat Simple_repeat 1 26 0 249 167 106 30 chr13 44227955 44228021 -75516877 - MLT1K LTR MaLR -2 586 516 264 30 0 0 chr13 44228180 44228213 -75516685 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2141 114 0 0 chr13 44228213 44228493 -75516405 - AluSx SINE Alu -32 280 1 333 316 86 34 chr13 44228885 44229002 -75515896 + L2 LINE L2 3146 3268 -4 1802 154 3 30 chr13 44229375 44229680 -75515218 - AluSx SINE Alu -15 297 1 311 247 34 51 chr13 44229682 44229851 -75515047 - L1MC/D LINE L1 -297 5824 5673 1809 139 0 77 chr13 44230194 44230504 -75514394 + AluSx SINE Alu 6 291 -21 843 161 0 8 chr13 44230509 44230639 -75514259 - FLAM_C SINE Alu 0 133 5 271 264 127 59 chr13 44230768 44230780 -75514118 - HAL1 LINE L1 -1446 1061 1051 1801 145 6 42 chr13 44230780 44230991 -75513907 - AluJo SINE Alu 0 312 114 1886 133 91 0 chr13 44230991 44231277 -75513621 - AluSx SINE Alu 0 312 1 1801 145 6 42 chr13 44231277 44231376 -75513522 - AluJo SINE Alu -198 114 13 271 264 127 59 chr13 44231376 44231670 -75513228 - HAL1 LINE L1 -1456 1051 734 467 356 68 5 chr13 44231906 44232128 -75512770 - MIR SINE MIR -1 261 26 248 116 4 0 chr13 44232131 44232174 -75512724 + Alu SINE Alu 161 196 -105 235 114 0 0 chr13 44232765 44232800 -75512098 + U2 snRNA snRNA 1 35 -153 1996 105 0 4 chr13 44232860 44233117 -75511781 + AluSq SINE Alu 1 256 -57 1676 245 92 6 chr13 44233117 44233607 -75511291 + MLT1F LTR MaLR 11 542 0 932 103 0 0 chr13 44234336 44234462 -75510436 - FLAM_C SINE Alu -7 126 1 2682 45 0 3 chr13 44234468 44234780 -75510118 - AluY SINE Alu 0 311 1 297 0 0 0 chr13 44235839 44235872 -75509026 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr13 44236010 44236033 -75508865 + (GGA)n Simple_repeat Simple_repeat 2 24 0 1043 105 6 52 chr13 44236761 44236933 -75507965 + AluSx SINE Alu 1 164 -148 322 42 21 0 chr13 44237099 44237147 -75507751 - AluY SINE Alu -259 49 1 1817 126 49 11 chr13 44237147 44237312 -75507586 - AluSx SINE Alu -15 297 140 2177 78 24 3 chr13 44237312 44237326 -75507572 - AluSc SINE Alu -10 299 287 486 0 0 0 chr13 44237326 44237380 -75507518 + (TTATG)n Simple_repeat Simple_repeat 2 55 0 2177 78 24 3 chr13 44237380 44237658 -75507240 - AluSc SINE Alu -22 287 1 315 0 0 0 chr13 44237658 44237693 -75507205 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1817 126 49 11 chr13 44237693 44237812 -75507086 - AluSx SINE Alu -171 141 1 1209 176 24 0 chr13 44237875 44238044 -75506854 - AluSg/x SINE Alu -8 302 126 207 0 0 0 chr13 44238044 44238067 -75506831 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1209 176 24 0 chr13 44238067 44238102 -75506796 - AluSg/x SINE Alu -184 126 93 246 158 0 0 chr13 44238108 44238146 -75506752 - Alu SINE Alu -264 38 1 235 276 209 56 chr13 44238415 44238486 -75506412 - L2 LINE L2 -239 3074 3015 2178 112 0 53 chr13 44238486 44238808 -75506090 + AluSg SINE Alu 1 305 -5 235 276 209 56 chr13 44238808 44238932 -75505966 - L2 LINE L2 -298 3015 2849 1955 127 39 0 chr13 44238963 44239084 -75505814 + AluSx SINE Alu 1 116 -196 2728 14 0 0 chr13 44239084 44239379 -75505519 + AluYa5 SINE Alu 16 310 -1 1955 127 39 0 chr13 44239379 44239541 -75505357 + AluSx SINE Alu 116 295 -17 246 62 0 0 chr13 44239541 44239573 -75505325 + (GGGGA)n Simple_repeat Simple_repeat 1 32 0 227 185 0 19 chr13 44239725 44239779 -75505119 + GA-rich Low_complexity Low_complexity 3 55 0 26 30 0 0 chr13 44240141 44240174 -75504724 + AT_rich Low_complexity Low_complexity 1 33 0 878 134 0 0 chr13 44240332 44240474 -75504424 + L1PA14 LINE L1 6019 6160 -1 972 205 78 83 chr13 44240537 44240567 -75504331 - L1MC5 LINE L1 -370 7591 7562 3960 108 11 0 chr13 44240567 44241115 -75503783 + MER41A LTR ERV1 1 554 0 972 205 78 83 chr13 44241115 44241479 -75503419 - L1MC5 LINE L1 -399 7562 7199 1816 167 27 10 chr13 44241495 44241795 -75503103 + AluJb SINE Alu 1 305 -7 2461 68 22 19 chr13 44242087 44242398 -75502500 + AluSx SINE Alu 1 312 0 2391 113 0 0 chr13 44242410 44242719 -75502179 + AluSq SINE Alu 1 309 -4 1902 113 46 14 chr13 44242787 44242919 -75501979 + AluSx SINE Alu 1 127 -185 2315 98 3 0 chr13 44242919 44243215 -75501683 + AluSx SINE Alu 1 297 -15 1902 113 46 14 chr13 44243215 44243366 -75501532 + AluSx SINE Alu 127 293 -19 612 85 19 19 chr13 44243383 44243489 -75501409 + (GGAA)n Simple_repeat Simple_repeat 1 106 0 192 133 0 0 chr13 44243621 44243651 -75501247 + MER5C DNA MER1_type 78 107 -217 588 134 62 0 chr13 44243682 44243779 -75501119 + AluSg/x SINE Alu 201 303 -6 765 190 26 65 chr13 44243801 44243997 -75500901 + MER5C DNA MER1_type 102 289 -35 2171 118 3 25 chr13 44243997 44244312 -75500586 + AluSx SINE Alu 1 308 -4 765 190 26 65 chr13 44244312 44244347 -75500551 + MER5C DNA MER1_type 289 324 0 420 125 0 0 chr13 44245002 44245058 -75499840 + AluS SINE Alu 2 57 -255 1154 133 61 0 chr13 44245062 44245227 -75499671 - AluSx SINE Alu -137 175 1 2303 204 22 66 chr13 44245338 44245917 -75498981 + MLT2B3 LTR ERVL 1 554 0 2498 57 0 13 chr13 44245938 44246237 -75498661 - AluY SINE Alu -16 295 1 1311 239 90 32 chr13 44246403 44246927 -75497971 + HAL1 LINE L1 1207 1760 -747 1729 170 125 50 chr13 44246931 44247348 -75497550 - MLT2B1 LTR ERVL -72 448 1 1272 261 82 57 chr13 44247348 44247581 -75497317 - L2 LINE L2 -27 3286 3060 2252 101 0 38 chr13 44247581 44247725 -75497173 + AluSx SINE Alu 1 149 -163 2393 82 10 0 chr13 44247725 44248018 -75496880 + AluSg SINE Alu 1 296 -14 2252 101 0 38 chr13 44248018 44248190 -75496708 + AluSx SINE Alu 149 305 -7 1272 261 82 57 chr13 44248190 44248213 -75496685 - L2 LINE L2 -253 3060 3039 1899 134 31 7 chr13 44248213 44248503 -75496395 - AluSx SINE Alu -15 297 1 1272 261 82 57 chr13 44248503 44249061 -75495837 - L2 LINE L2 -274 3039 2227 1752 211 114 30 chr13 44249122 44249614 -75495284 - MLT1H LTR MaLR -16 533 1 2572 59 3 0 chr13 44249632 44249935 -75494963 - AluY SINE Alu -7 304 1 1668 147 62 38 chr13 44250018 44250310 -75494588 + AluJb SINE Alu 11 309 -3 1782 181 3 3 chr13 44250314 44250617 -75494281 + AluJo SINE Alu 1 303 -9 270 280 38 68 chr13 44250942 44251074 -75493824 - L3b LINE CR1 -164 1419 1292 2065 145 0 3 chr13 44251467 44251764 -75493134 - AluSg SINE Alu -14 296 1 2677 62 0 0 chr13 44251773 44252079 -75492819 - AluY SINE Alu -5 306 1 330 268 106 16 chr13 44252261 44252384 -75492514 - MIR SINE MIR -81 181 48 183 80 0 0 chr13 44252524 44252549 -75492349 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 488 266 88 26 chr13 44252606 44252798 -75492100 + L3 LINE CR1 794 997 -580 2424 69 10 7 chr13 44252812 44253116 -75491782 + AluY SINE Alu 1 305 -6 2219 114 7 0 chr13 44253431 44253728 -75491170 + AluSx SINE Alu 1 299 -13 825 231 0 0 chr13 44253781 44253941 -75490957 + FRAM SINE Alu 6 165 -11 1049 213 59 75 chr13 44253943 44254219 -75490679 + MER39 LTR ERV1 343 613 -94 2250 97 13 0 chr13 44254219 44254517 -75490381 + AluSc SINE Alu 1 302 -7 1049 213 59 75 chr13 44254517 44254611 -75490287 + MER39 LTR ERV1 613 707 0 910 158 0 0 chr13 44255367 44255500 -75489398 - AluJb SINE Alu -179 133 1 732 151 0 103 chr13 44255520 44255666 -75489232 + FLAM_C SINE Alu 3 133 0 771 217 0 26 chr13 44256412 44256564 -75488334 - FRAM SINE Alu -21 155 8 417 247 65 71 chr13 44257198 44257352 -75487546 + L2 LINE L2 1917 2069 -1245 1364 161 107 29 chr13 44257352 44257632 -75487266 - AluJo SINE Alu -10 302 1 305 145 246 0 chr13 44257635 44257704 -75487194 - FLAM_A SINE Alu -13 120 35 531 244 349 11 chr13 44257721 44258421 -75486477 + L2 LINE L2 2069 3054 -259 672 208 8 0 chr13 44259054 44259179 -75485719 + FLAM_C SINE Alu 1 126 -17 1086 183 79 8 chr13 44259475 44259715 -75485183 + AluJo SINE Alu 31 287 -25 289 218 129 10 chr13 44260007 44260108 -75484790 - MER58 DNA MER1_type -82 259 147 1957 143 11 0 chr13 44261553 44261839 -75483059 - AluSx SINE Alu -23 289 1 1074 182 30 2 chr13 44265567 44265629 -75479269 + AluJo SINE Alu 7 66 -246 189 0 0 0 chr13 44265629 44265650 -75479248 + (CA)n Simple_repeat Simple_repeat 2 22 0 1074 182 30 2 chr13 44265650 44265823 -75479075 + AluJo SINE Alu 66 297 -15 1109 68 0 0 chr13 44266221 44266354 -75478544 + AluSp SINE Alu 149 281 -32 2239 85 0 7 chr13 44266681 44266963 -75477935 - AluSx SINE Alu -31 281 2 2426 89 0 0 chr13 44267166 44267470 -75477428 + AluSx SINE Alu 1 304 -8 250 179 86 60 chr13 44267540 44267657 -75477241 - MER112 DNA MER1_type -43 217 98 1170 127 0 0 chr13 44267657 44267882 -75477016 - AluSg/x SINE Alu 0 345 121 2025 157 0 0 chr13 44268261 44268561 -75476337 + AluSx SINE Alu 1 300 -12 2108 95 0 0 chr13 44268630 44268892 -75476006 + AluSq SINE Alu 1 262 -51 535 134 24 0 chr13 44268892 44268974 -75475924 + FLAM SINE Alu 45 128 -15 2504 60 0 7 chr13 44269040 44269340 -75475558 + AluY SINE Alu 1 298 -13 450 246 73 92 chr13 44269348 44269434 -75475464 + L2 LINE L2 3015 3101 -212 1785 148 79 0 chr13 44269434 44269712 -75475186 - AluSx SINE Alu -10 302 3 2536 64 0 10 chr13 44269712 44270025 -75474873 - AluY SINE Alu -1 310 1 450 246 73 92 chr13 44270025 44270073 -75474825 + L2 LINE L2 3100 3147 -166 2359 103 10 0 chr13 44270073 44270383 -75474515 - AluSp SINE Alu 0 313 1 450 246 73 92 chr13 44270383 44270506 -75474392 + L2 LINE L2 3147 3269 -44 2055 137 0 40 chr13 44270508 44270830 -75474068 + AluSx SINE Alu 1 309 -3 841 146 0 23 chr13 44271291 44271421 -75473477 + FLAM_C SINE Alu 1 127 -16 2251 93 23 3 chr13 44272012 44272314 -75472584 - AluSg SINE Alu -2 308 1 2394 96 3 6 chr13 44272324 44272636 -75472262 - AluY SINE Alu 0 311 1 558 0 0 0 chr13 44272757 44272819 -75472079 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 2529 85 0 0 chr13 44273412 44273717 -75471181 + AluSp SINE Alu 1 305 -8 2159 117 0 0 chr13 44274011 44274294 -75470604 + AluSx SINE Alu 21 303 -9 800 171 0 0 chr13 44274583 44274706 -75470192 - FLAM_A SINE Alu -10 123 1 1775 175 0 23 chr13 44275288 44275597 -75469301 - AluJb SINE Alu -8 304 3 2576 57 0 0 chr13 44275882 44276180 -75468718 - AluY SINE Alu -13 298 1 2235 107 0 13 chr13 44276180 44276345 -75468553 - AluSp SINE Alu -17 296 135 2421 76 3 13 chr13 44276345 44276659 -75468239 - AluY SINE Alu 0 311 1 2235 107 0 13 chr13 44276659 44276793 -75468105 - AluSp SINE Alu -178 135 1 843 127 0 24 chr13 44276794 44276920 -75467978 - FLAM_C SINE Alu -11 132 10 1821 160 0 36 chr13 44276927 44277234 -75467664 + AluJb SINE Alu 1 296 -16 1961 149 0 7 chr13 44277597 44277899 -75466999 - AluJb SINE Alu -1 311 12 2306 129 0 0 chr13 44277936 44278247 -75466651 - AluSx SINE Alu -1 311 1 2324 104 0 0 chr13 44278395 44278693 -75466205 - AluSx SINE Alu -14 298 1 280 255 189 46 chr13 44479406 44479602 -75265296 - L3 LINE CR1 -164 1413 1190 * 582 251 278 3 chr13 44479560 44479855 -75265043 + L2 LINE L2 2255 2630 -684 2647 165 34 16 chr13 44479861 44480359 -75264539 - MLT2B2 LTR ERVL -8 507 1 495 258 90 86 chr13 44480486 44480951 -75263947 + L2 LINE L2 2844 3310 -3 192 292 77 0 chr13 44481318 44481383 -75263515 - L3 LINE CR1 -901 676 607 207 0 0 0 chr13 44481687 44481710 -75263188 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 333 0 44 chr13 44482165 44482255 -75262643 - L3 LINE CR1 -1312 265 180 455 336 22 0 chr13 44482367 44482501 -75262397 - MIR SINE MIR -79 183 47 182 115 0 0 chr13 44482718 44482744 -75262154 - MIR SINE MIR -12 250 225 399 41 0 0 chr13 44483410 44483459 -75261439 + (TA)n Simple_repeat Simple_repeat 2 50 0 2273 118 0 0 chr13 44483459 44483764 -75261134 - AluSx SINE Alu -7 305 1 582 224 106 103 chr13 44483878 44484208 -75260690 - MER46C DNA MER2_type -7 331 1 1069 182 50 1 chr13 44484777 44485121 -75259777 + MER119 DNA MER1_type 10 401 -182 269 286 89 18 chr13 44485097 44485209 -75259689 + MER34B LTR ERV1 5 124 -441 * 398 272 35 49 chr13 44485296 44485583 -75259315 + MER34B LTR ERV1 283 565 0 934 161 49 45 chr13 44485583 44485807 -75259091 + MER119 DNA MER1_type 359 583 0 303 209 38 57 chr13 44485822 44485927 -75258971 + L2 LINE L2 2435 2537 -777 2458 87 10 0 chr13 44486438 44486747 -75258151 - AluSx SINE Alu 0 312 1 3304 143 28 2 chr13 44488254 44488794 -75256104 + MER41C LTR ERV1 1 554 0 734 270 77 8 chr13 44489244 44489503 -75255395 - L1MC/D LINE L1 -2148 5660 5384 23 33 0 0 chr13 44491223 44491253 -75253645 + AT_rich Low_complexity Low_complexity 1 30 0 792 142 0 0 chr13 44491503 44491630 -75253268 - L1PB1 LINE L1 -8 6143 6017 204 293 67 0 chr13 44491791 44491866 -75253032 - L2 LINE L2 -1454 1860 1781 1474 137 32 0 chr13 44491867 44492111 -75252787 - AluSq SINE Alu 0 307 57 970 140 156 31 chr13 44492250 44492507 -75252391 - L1MB8 LINE L1 -118 6060 5772 270 293 155 6 chr13 44492642 44492823 -75252075 - L1MC4a LINE L1 -1614 6194 5987 2374 51 41 0 chr13 44492827 44493122 -75251776 - AluY SINE Alu -4 307 1 634 250 213 0 chr13 44493134 44493430 -75251468 - L2 LINE L2 -1597 1717 1359 353 270 10 50 chr13 44493436 44493536 -75251362 - L2 LINE L2 -2075 1239 1144 1372 225 98 38 chr13 44493583 44494156 -75250742 - L1MC4 LINE L1 -2 8040 7434 2055 126 3 14 chr13 44494612 44494905 -75249993 + AluSx SINE Alu 1 290 -22 435 277 7 51 chr13 44495497 44495634 -75249264 + MIR SINE MIR 80 210 -52 314 281 67 85 chr13 44496808 44496972 -75247926 + HAL1b LINE L1 751 911 -437 581 167 45 15 chr13 44497850 44497982 -75246916 - L1MD1 LINE L1 -23 6219 6084 430 193 72 0 chr13 44498135 44498218 -75246680 + Tigger5 DNA MER2_type 1 89 -2234 464 149 0 0 chr13 44498268 44498342 -75246556 + Tigger5 DNA MER2_type 2250 2323 0 1519 225 63 48 chr13 44498347 44498423 -75246475 - L1MEc LINE L1 -4354 2768 2695 1796 148 3 53 chr13 44498423 44498727 -75246171 + AluJo SINE Alu 1 289 -23 1519 225 63 48 chr13 44498727 44499024 -75245874 - L1MEc LINE L1 -4427 2695 2380 2438 87 0 0 chr13 44499024 44499333 -75245565 - AluSq SINE Alu -3 310 2 1519 225 63 48 chr13 44499333 44499563 -75245335 - L1MEc LINE L1 -4742 2380 2155 830 267 41 9 chr13 44499791 44500106 -75244792 - L1MEc LINE L1 -5257 1684 1360 2425 77 0 0 chr13 44500107 44500405 -75244493 - AluY SINE Alu -13 298 1 504 263 61 9 chr13 44500419 44500632 -75244266 - L1MEc LINE L1 -6168 255 32 245 175 105 0 chr13 44500880 44500937 -75243961 - MIR SINE MIR -3 259 197 2505 56 0 28 chr13 44501376 44501696 -75243202 - AluY SINE Alu 0 311 1 371 319 42 21 chr13 44501698 44501842 -75243056 - MIR SINE MIR -70 192 46 1646 160 23 23 chr13 44502438 44502738 -75242160 - AluJb SINE Alu -12 300 1 1729 181 7 7 chr13 44502960 44503258 -75241640 + AluJb SINE Alu 1 298 -14 692 303 39 17 chr13 44504248 44504482 -75240416 + MIR SINE MIR 16 254 -8 536 229 35 47 chr13 44504668 44504838 -75240060 - L1ME1 LINE L1 -15 6151 5984 2260 104 3 0 chr13 44504905 44505204 -75239694 - AluY SINE Alu -11 300 1 2292 60 43 0 chr13 44505475 44505757 -75239141 - AluY SINE Alu -17 294 1 2325 71 0 52 chr13 44505757 44506065 -75238833 - AluSx SINE Alu -18 294 3 707 279 53 5 chr13 44506807 44507015 -75237883 - MIR SINE MIR -13 249 32 23 0 0 0 chr13 44507598 44507621 -75237277 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 44507849 44507875 -75237023 + AT_rich Low_complexity Low_complexity 1 26 0 272 253 121 40 chr13 44508773 44508872 -75236026 - L2 LINE L2 -14 3299 3193 266 193 0 0 chr13 44509420 44509477 -75235421 + L1ME4a LINE L1 5968 6024 -97 392 337 40 20 chr13 44509587 44509786 -75235112 - L2 LINE L2 -8 3305 3103 258 337 11 11 chr13 44510124 44510216 -75234682 - MIR SINE MIR -83 125 34 372 22 0 0 chr13 44510342 44510387 -75234511 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 9206 35 8 177 chr13 44510387 44512004 -75232894 - SVA Other Other -23 1363 20 284 0 0 27 chr13 44512005 44512042 -75232856 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 193 350 86 29 chr13 44512428 44512568 -75232330 - L2 LINE L2 -188 3084 2937 4713 123 47 10 chr13 44512728 44513927 -75230971 + L1MA4A LINE L1 4785 6028 -275 21 0 0 0 chr13 44514028 44514049 -75230849 + AT_rich Low_complexity Low_complexity 1 21 0 809 117 39 7 chr13 44514212 44514366 -75230532 + L1MA4 LINE L1 6137 6295 -5 184 326 0 54 chr13 44514372 44514464 -75230434 - L2 LINE L2 -627 2687 2601 1998 163 3 0 chr13 44514753 44515060 -75229838 + AluJb SINE Alu 1 308 -4 260 264 105 34 chr13 44515446 44515742 -75229156 + L1ME4a LINE L1 4381 4697 -1449 317 287 96 22 chr13 44515999 44516135 -75228763 + L1ME4a LINE L1 5481 5626 -495 257 317 124 0 chr13 44516151 44516296 -75228602 - MIR SINE MIR -92 170 8 234 259 19 0 chr13 44516383 44516437 -75228461 - MIR SINE MIR -13 249 195 299 224 143 27 chr13 44516448 44516707 -75228191 + L1ME4a LINE L1 5828 6116 -5 2357 99 0 0 chr13 44519921 44520223 -75224675 + AluSq SINE Alu 1 302 -11 1706 169 7 13 chr13 44520396 44520704 -75224194 - AluJb SINE Alu -6 306 1 2293 78 48 0 chr13 44520728 44521022 -75223876 - AluSc SINE Alu -1 308 1 843 147 0 22 chr13 44521030 44521166 -75223732 - FLAM_C SINE Alu 0 133 1 1909 153 10 16 chr13 44521251 44521558 -75223340 - AluJb SINE Alu -7 305 1 225 309 71 0 chr13 44521623 44521707 -75223191 + MIR SINE MIR 81 170 -92 25 31 0 0 chr13 44521785 44521817 -75223081 + AT_rich Low_complexity Low_complexity 1 32 0 38 0 0 0 chr13 44522242 44522280 -75222618 + AT_rich Low_complexity Low_complexity 1 38 0 874 86 8 0 chr13 44522280 44522397 -75222501 - AluJb SINE Alu -194 118 1 2468 69 0 0 chr13 44522546 44522851 -75222047 - AluY SINE Alu -6 305 1 352 205 178 49 chr13 44523219 44523380 -75221518 - L1MC5 LINE L1 -48 7913 7723 1903 145 0 7 chr13 44523380 44523699 -75221199 + AluJb SINE Alu 1 317 0 352 205 178 49 chr13 44523699 44523721 -75221177 - L1MC5 LINE L1 -238 7723 7705 449 153 15 73 chr13 44523860 44523997 -75220901 - L1MC5 LINE L1 -230 7731 7603 * 736 234 70 8 chr13 44523981 44524225 -75220673 - L1MC4 LINE L1 -76 7966 7708 814 100 0 0 chr13 44524235 44524345 -75220553 - AluSp/q SINE Alu -10 303 194 1146 221 28 22 chr13 44524373 44524517 -75220381 - L1M4 LINE L1 -1172 4974 4832 216 0 0 0 chr13 44524517 44524541 -75220357 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1146 221 28 22 chr13 44524541 44524718 -75220180 - L1M4 LINE L1 -1314 4832 4651 1085 234 102 41 chr13 44524813 44525275 -75219623 - L1MC4a LINE L1 -1011 6797 6308 250 264 216 14 chr13 44525375 44525523 -75219375 + MIR SINE MIR 36 213 -49 1817 153 14 0 chr13 44525618 44525905 -75218993 + AluJb SINE Alu 1 291 -21 477 34 0 0 chr13 44525915 44525974 -75218924 + (TG)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chr13 44525973 44525995 -75218903 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 4847 163 30 68 chr13 44526416 44527612 -75217286 - L1MC3 LINE L1 -1 7784 6634 21 71 0 0 chr13 44527820 44527862 -75217036 + AT_rich Low_complexity Low_complexity 1 42 0 1242 126 5 5 chr13 44528506 44528705 -75216193 - L1PB2 LINE L1 0 6151 5953 354 373 6 0 chr13 44530406 44530575 -75214323 - L2 LINE L2 -663 2651 2482 566 127 83 142 chr13 44530617 44530780 -75214118 + MER33 DNA MER1_type 1 142 -90 2221 91 0 0 chr13 44530780 44531055 -75213843 + AluSx SINE Alu 1 275 -37 342 78 20 0 chr13 44531186 44531237 -75213661 + Alu SINE Alu 247 298 -2 * 561 100 91 0 chr13 44531226 44531336 -75213562 + MER33 DNA MER1_type 163 282 -81 2319 94 0 10 chr13 44531337 44531636 -75213262 - AluSx SINE Alu -16 296 1 1390 158 115 29 chr13 44531648 44531926 -75212972 - AluJo SINE Alu 0 302 1 916 206 0 6 chr13 44531928 44532108 -75212790 - AluSg/x SINE Alu -13 299 121 2326 118 0 0 chr13 44533512 44533817 -75211081 + AluSx SINE Alu 1 305 -7 2210 126 0 3 chr13 44533819 44534128 -75210770 + AluSg SINE Alu 3 310 0 24 0 0 0 chr13 44534393 44534417 -75210481 + AT_rich Low_complexity Low_complexity 1 24 0 291 250 48 0 chr13 44534417 44534501 -75210397 - L1MC4 LINE L1 -1339 6703 6616 263 248 132 8 chr13 44534508 44534629 -75210269 - L1MC4 LINE L1 -124 7918 7783 2363 96 0 0 chr13 44535072 44535365 -75209533 - AluSg SINE Alu -15 295 3 1866 167 0 3 chr13 44537925 44538225 -75206673 - AluJo SINE Alu -13 299 1 1714 174 46 0 chr13 44538225 44538506 -75206392 - AluJb SINE Alu -17 295 2 654 88 65 6 chr13 44538776 44538946 -75205952 + (TA)n Simple_repeat Simple_repeat 1 180 0 212 95 0 48 chr13 44538946 44538988 -75205910 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 669 78 72 0 chr13 44538988 44539154 -75205744 + (TA)n Simple_repeat Simple_repeat 1 178 0 2286 116 0 0 chr13 44539750 44540053 -75204845 - AluSx SINE Alu -9 303 1 2391 67 3 7 chr13 44540240 44540540 -75204358 - AluY SINE Alu -12 299 1 226 313 28 31 chr13 44542251 44542384 -75202514 + MIR SINE MIR 23 152 -63 480 199 252 0 chr13 44542735 44542866 -75202032 + MER105 DNA DNA 25 188 -16 26 30 0 0 chr13 44543079 44543112 -75201786 + AT_rich Low_complexity Low_complexity 1 33 0 1083 184 5 42 chr13 44545185 44545402 -75199496 - MER6B DNA MER2_type 0 210 2 1644 174 9 31 chr13 44545589 44545906 -75198992 + AluJb SINE Alu 1 310 -2 582 171 9 9 chr13 44546644 44546749 -75198149 + FLAM_A SINE Alu 15 119 -23 231 36 0 0 chr13 44547169 44547197 -75197701 + (CA)n Simple_repeat Simple_repeat 1 28 0 2084 126 7 7 chr13 44547394 44547696 -75197202 - AluSx SINE Alu -10 302 1 548 82 0 24 chr13 44551096 44551181 -75193717 - L1PA16 LINE L1 -2 6164 6082 1197 130 10 24 chr13 44553242 44553450 -75191448 - L1MD2 LINE L1 -1 6358 6154 631 214 120 94 chr13 44553872 44554288 -75190610 - L1MC4 LINE L1 -133 7909 7483 247 206 137 0 chr13 44554292 44554365 -75190533 + L1M4 LINE L1 2664 2746 -3400 764 185 20 70 chr13 44554417 44554617 -75190281 + MER20 DNA MER1_type 30 219 0 355 221 157 36 chr13 44554685 44554825 -75190073 + L2 LINE L2 3141 3297 -16 323 178 0 14 chr13 44555403 44555476 -75189422 + C-rich Low_complexity Low_complexity 4 75 0 1688 170 18 4 chr13 44555477 44555753 -75189145 - AluJb SINE Alu -32 280 1 1862 152 10 10 chr13 44555758 44556061 -75188837 - AluSx SINE Alu -9 303 1 212 250 0 0 chr13 44557287 44557335 -75187563 + MIR SINE MIR 82 129 -133 693 258 52 14 chr13 44557594 44557807 -75187091 - MIR SINE MIR -19 243 23 497 257 9 0 chr13 44559469 44559582 -75185316 - MER81 DNA DNA 0 114 1 1551 194 76 45 chr13 44559963 44560411 -75184487 + MLT1C LTR MaLR 6 467 0 1056 161 0 87 chr13 44560630 44560711 -75184187 - AluJo SINE Alu -101 211 125 1906 146 0 10 chr13 44560711 44561026 -75183872 - AluSx SINE Alu 0 312 1 1056 161 0 87 chr13 44561026 44561161 -75183737 - AluJo SINE Alu -187 125 13 325 238 125 12 chr13 44561852 44562012 -75182886 + L2 LINE L2 2888 3065 -248 320 157 121 60 chr13 44562082 44562165 -75182733 + MER82 DNA MER2_type 7 94 -559 281 328 17 9 chr13 44562413 44562529 -75182369 - MIR SINE MIR -115 147 31 443 229 10 10 chr13 44562593 44562689 -75182209 + MER82 DNA MER2_type 448 543 -110 555 186 0 10 chr13 44562724 44562821 -75182077 - MER82 DNA MER2_type -557 96 1 221 324 29 19 chr13 44562821 44562926 -75181972 + L2 LINE L2 3169 3274 -39 1260 239 36 18 chr13 44563260 44563590 -75181308 + LTR47B LTR ERVL 108 443 0 817 181 19 0 chr13 44563846 44564006 -75180892 + MIR SINE MIR 28 190 -72 296 253 11 0 chr13 44564340 44564427 -75180471 + LTR43 LTR ERV1 204 291 -311 2196 115 3 0 chr13 44565810 44566105 -75178793 + AluSx SINE Alu 1 296 -16 216 222 0 0 chr13 44567263 44567308 -75177590 + MIR3 SINE MIR 116 160 -48 2160 182 63 11 chr13 44567364 44567808 -75177090 - MLT1C LTR MaLR 0 467 1 279 219 96 0 chr13 44567986 44568059 -75176839 - MLT1C LTR MaLR -387 80 1 618 249 83 118 chr13 44568061 44568538 -75176360 - L1M4 LINE L1 -2682 3464 2972 746 182 0 8 chr13 44568538 44568659 -75176239 - 5S rRNA rRNA 0 121 2 618 249 83 118 chr13 44568659 44568682 -75176216 - L1M4 LINE L1 -3174 2972 2950 1499 203 124 14 chr13 44568682 44569037 -75175861 + MSTD LTR MaLR 1 394 -2 618 249 83 118 chr13 44569037 44569352 -75175546 - L1M4 LINE L1 -3196 2950 2676 567 268 21 16 chr13 44569412 44569602 -75175296 - L1MEd LINE L1 -5910 209 19 216 273 91 0 chr13 44570357 44570412 -75174486 - L3 LINE CR1 -75 1502 1443 181 327 133 9 chr13 44570710 44570823 -75174075 - MIR SINE MIR -4 258 132 3055 129 38 40 chr13 44571005 44571562 -75173336 - L1MA8 LINE L1 0 6291 5736 289 209 67 48 chr13 44572672 44572777 -75172121 + MLT1J1 LTR MaLR 29 135 -311 406 302 26 37 chr13 44572827 44573016 -75171882 + MLT1J2 LTR MaLR 264 450 0 850 315 42 24 chr13 44573113 44573494 -75171404 + L2 LINE L2 2925 3312 -1 14246 174 23 14 chr13 44573579 44577404 -75167494 - L1PB1 LINE L1 -2 6149 2295 3218 127 64 7 chr13 44577490 44578034 -75166864 - L1MC1 LINE L1 0 6333 5759 1059 167 0 17 chr13 44578091 44578265 -75166633 - FAM SINE Alu -4 171 1 231 301 41 0 chr13 44578918 44578991 -75165907 - L2 LINE L2 -3 3310 3235 1509 174 97 0 chr13 44579255 44579513 -75165385 - AluSx SINE Alu -29 283 1 314 161 113 0 chr13 44581898 44581960 -75162938 + L2 LINE L2 3238 3306 -7 1973 134 102 15 chr13 44582394 44582729 -75162169 + THE1B LTR MaLR 1 364 0 11970 89 11 3 chr13 44582729 44584297 -75160601 + THE1B-int LTR MaLR 1 1580 0 2113 126 85 18 chr13 44584297 44584638 -75160260 + THE1B LTR MaLR 1 364 0 1163 80 74 0 chr13 44585510 44585673 -75159225 + L1PA11 LINE L1 6000 6174 0 2039 126 0 0 chr13 44586058 44586351 -75158547 - AluSx SINE Alu -19 293 1 929 124 0 0 chr13 44587241 44587370 -75157528 + FLAM_C SINE Alu 1 129 -4 1377 179 13 152 chr13 44588512 44588965 -75155933 + MLT1B LTR MaLR 1 390 0 244 306 90 0 chr13 44589205 44589316 -75155582 + L2 LINE L2 2603 2723 -591 899 278 78 61 chr13 44589636 44590175 -75154723 + L1MC/D LINE L1 5255 5802 -2006 189 314 20 0 chr13 44590474 44590525 -75154373 + L2 LINE L2 2700 2751 -563 948 183 61 5 chr13 44591449 44591646 -75153252 - L1MDa LINE L1 -6137 403 196 223 307 43 97 chr13 44592086 44592343 -75152555 - L2 LINE L2 -254 3059 2817 186 295 54 8 chr13 44592319 44592448 -75152450 - L2 LINE L2 -422 2892 2758 * 224 287 65 73 chr13 44594221 44594399 -75150499 + MIR SINE MIR 35 218 -44 2068 93 0 0 chr13 44594451 44594731 -75150167 - AluSc SINE Alu -4 305 26 1556 155 72 21 chr13 44594777 44595067 -75149831 - AluJo SINE Alu -7 305 1 2960 142 10 12 chr13 44595167 44595653 -75149245 + MER31A LTR ERV1 1 485 0 299 235 241 35 chr13 44595892 44595945 -75148953 + MER5A DNA MER1_type 5 46 -143 1378 186 54 0 chr13 44595945 44596225 -75148673 + AluJb SINE Alu 1 295 -17 299 235 241 35 chr13 44596225 44596317 -75148581 + MER5A DNA MER1_type 46 185 -4 189 288 220 17 chr13 44597360 44597478 -75147420 + L2 LINE L2 3167 3308 -5 2074 119 0 0 chr13 44598558 44598851 -75146047 - AluSx SINE Alu -19 293 1 1776 312 114 34 chr13 44599049 44600116 -75144782 - L3 LINE CR1 -124 1453 301 2254 113 39 36 chr13 44600723 44601086 -75143812 + THE1B LTR MaLR 1 364 0 230 167 24 0 chr13 44601277 44601319 -75143579 - L2 LINE L2 -8 3305 3263 192 167 0 28 chr13 44601737 44601773 -75143125 + MER5A DNA MER1_type 40 74 -115 214 281 34 67 chr13 44605153 44605242 -75139656 + MIR SINE MIR 20 105 -157 860 254 22 17 chr13 44606646 44606878 -75138020 - MIR SINE MIR -12 250 18 214 229 0 21 chr13 44607363 44607411 -75137487 - L2 LINE L2 -6 3307 3261 233 243 27 81 chr13 44608661 44608680 -75136218 + L1ME LINE L1 5809 5827 -294 2171 107 0 0 chr13 44608680 44608988 -75135910 + AluY SINE Alu 1 308 -3 233 243 27 81 chr13 44608988 44609079 -75135819 + L1ME LINE L1 5827 5913 -208 278 315 56 42 chr13 44609372 44609515 -75135383 + MIR3 SINE MIR 19 163 -45 369 250 138 17 chr13 44610223 44610339 -75134559 - MIR SINE MIR -46 216 87 874 217 25 43 chr13 44610794 44611029 -75133869 - MIR SINE MIR -1 261 31 497 205 77 64 chr13 44611105 44611261 -75133637 - MER117 DNA MER1_type -34 163 6 240 218 0 103 chr13 44611368 44611455 -75133443 - L2 LINE L2 -5 3267 3190 370 177 73 179 chr13 44612520 44613028 -75131870 + L1ME4a LINE L1 5618 6071 -50 1238 174 5 9 chr13 44613091 44613310 -75131588 - AluJo SINE Alu -94 218 1 328 264 0 78 chr13 44613992 44614185 -75130713 + CT-rich Low_complexity Low_complexity 1 178 0 225 355 0 0 chr13 44614881 44614957 -75129941 - LTR16B LTR ERVL -388 76 1 451 299 60 57 chr13 44615189 44615710 -75129188 + L2 LINE L2 2514 3313 0 657 340 62 35 chr13 44616070 44616502 -75128396 + LTR16A LTR ERVL 7 450 0 1513 164 171 32 chr13 44616742 44617176 -75127722 - LTR54B LTR ERV1 -4 494 1 690 109 0 0 chr13 44617628 44617720 -75127178 + MER31A LTR ERV1 1 92 -393 281 152 0 15 chr13 44617728 44617794 -75127104 - L1PB4 LINE L1 0 6156 6092 12964 110 11 58 chr13 44617935 44620794 -75124104 - L1P3 LINE L1 -3611 2850 9 678 169 0 8 chr13 44620810 44620934 -75123964 + MER69 DNA AcHobo 2394 2516 -10 305 274 32 42 chr13 44621726 44621821 -75123077 - L2 LINE L2 -20 3293 3200 1472 255 138 39 chr13 44622655 44623628 -75121270 + L2 LINE L2 2268 3311 -2 984 210 0 0 chr13 44623840 44624007 -75120891 - FAM SINE Alu -8 167 1 30 0 0 0 chr13 44624174 44624204 -75120694 + AT_rich Low_complexity Low_complexity 1 30 0 271 394 80 17 chr13 44625193 44625495 -75119403 - L3 LINE CR1 -1110 467 147 192 328 15 0 chr13 44628651 44628718 -75116180 - MIR SINE MIR 0 262 195 636 266 178 49 chr13 44629125 44629512 -75115386 + L2 LINE L2 2863 3299 -14 1905 138 58 21 chr13 44629645 44629716 -75115182 - MER7A DNA MER2_type -2693 345 278 4735 117 14 29 chr13 44629716 44630453 -75114445 + LTR8A LTR ERV1 2 727 0 1905 138 58 21 chr13 44630453 44630707 -75114191 - MER7A DNA MER2_type -2760 278 10 225 0 0 0 chr13 44630712 44630737 -75114161 + (TG)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chr13 44630737 44630770 -75114128 + AT_rich Low_complexity Low_complexity 1 33 0 236 273 129 38 chr13 44631764 44631896 -75113002 - L3 LINE CR1 -215 1362 1219 482 279 81 15 chr13 44631896 44632093 -75112805 - L3 LINE CR1 -706 871 662 362 267 0 22 chr13 44632119 44632209 -75112689 - L2 LINE L2 -2 3270 3183 257 285 73 56 chr13 44632290 44632469 -75112429 - L2 LINE L2 -2765 549 368 192 310 92 23 chr13 44634241 44634328 -75110570 + L2 LINE L2 3180 3272 0 305 162 15 0 chr13 44635468 44635536 -75109362 + GA-rich Low_complexity Low_complexity 2 70 0 18411 95 11 3 chr13 44636262 44639569 -75105329 - L1PA7 LINE L1 -2 6152 2823 359 265 109 14 chr13 44639715 44639862 -75105036 - MIR SINE MIR -13 249 89 1719 209 90 37 chr13 44640444 44640956 -75103942 + HsTC2 DNA Tc2 1185 1899 0 412 266 96 15 chr13 44641136 44641335 -75103563 - MLT1J1 LTR MaLR -1 445 231 234 0 0 0 chr13 44641340 44641366 -75103532 + (GA)n Simple_repeat Simple_repeat 1 26 0 2511 84 0 0 chr13 44641482 44641793 -75103105 + AluSq SINE Alu 1 311 -2 1747 167 17 17 chr13 44642266 44642566 -75102332 - AluJo SINE Alu -10 302 3 498 275 8 0 chr13 44642648 44642779 -75102119 + MLT1J2 LTR MaLR 37 168 -282 579 295 124 5 chr13 44642791 44643001 -75101897 + MLT1J1 LTR MaLR 207 441 -5 858 196 49 0 chr13 44643027 44643196 -75101702 + FRAM SINE Alu 1 40 0 31855 110 11 57 chr13 44643909 44650365 -75094533 - L1PA7 LINE L1 -1 6153 10 451 138 32 64 chr13 44650747 44650841 -75094057 + MER41A-int LTR ERV1 4 94 -7662 * 1338 133 0 10 chr13 44650832 44651035 -75093863 + MER41A-int LTR ERV1 2675 2875 -2140 * 9862 68 21 12 chr13 44651021 44652325 -75092573 + MER41A-int LTR ERV1 4630 5944 -2 3729 73 0 0 chr13 44652325 44652791 -75092107 + MER41A LTR ERV1 1 466 -88 223 184 20 0 chr13 44653108 44653157 -75091741 + GA-rich Low_complexity Low_complexity 1 50 0 430 311 114 17 chr13 44653239 44653590 -75091308 + L1MC/D LINE L1 3439 3823 -2323 875 158 8 0 chr13 44653622 44653755 -75091143 + AluJo SINE Alu 3 136 -176 43740 32 21 2 chr13 44653762 44659799 -75085099 + L1PA2 LINE L1 1 6155 0 367 296 136 24 chr13 44660086 44660382 -75084516 + MLT1L LTR MaLR 235 505 -6 192 77 0 0 chr13 44660586 44660612 -75084286 + (CA)n Simple_repeat Simple_repeat 2 27 0 321 335 87 5 chr13 44661091 44661458 -75083440 + L1MC/D LINE L1 4186 4602 -1544 1900 212 29 73 chr13 44661488 44662018 -75082880 - MLT2B3 LTR ERVL -48 500 3 26 50 0 0 chr13 44662494 44662534 -75082364 + AT_rich Low_complexity Low_complexity 1 40 0 2569 189 12 7 chr13 44662567 44662991 -75081907 - MSTB LTR MaLR 0 426 1 10496 149 9 33 chr13 44662991 44664682 -75080216 - MSTB-int LTR MaLR 0 1651 1 2740 171 0 14 chr13 44664682 44665114 -75079784 - MSTB LTR MaLR 0 426 1 346 295 82 76 chr13 44665137 44665639 -75079259 + L1MC/D LINE L1 5266 5770 -2038 328 243 9 54 chr13 44665647 44665758 -75079140 - LTR33A LTR ERVL 0 523 418 261 0 0 0 chr13 44665907 44665936 -75078962 + (TC)n Simple_repeat Simple_repeat 2 30 0 239 180 144 77 chr13 44666198 44666331 -75078567 + MLT1I LTR MaLR 96 139 -270 512 234 84 45 chr13 44666365 44666535 -75078363 + MLT1H LTR MaLR 322 510 -39 984 217 68 5 chr13 44666535 44666742 -75078156 - MER58A DNA MER1_type -2 222 3 512 234 84 45 chr13 44666742 44666782 -75078116 + MLT1H LTR MaLR 510 547 -2 258 250 25 12 chr13 44667996 44668076 -75076822 + (CATATA)n Simple_repeat Simple_repeat 1 81 0 1160 183 0 38 chr13 44668160 44668373 -75076525 - AluJo SINE Alu -23 289 85 548 220 16 14 chr13 44669061 44669171 -75075727 + L1PB4 LINE L1 6024 6133 -33 2255 124 156 13 chr13 44669171 44669543 -75075355 - MSTA LTR MaLR 0 428 4 548 220 16 14 chr13 44669543 44669574 -75075324 + L1PB4 LINE L1 6133 6162 -4 1772 167 48 12 chr13 44669755 44670090 -75074808 - THE1C LTR MaLR 0 375 29 393 274 232 12 chr13 44670321 44670489 -75074409 + MIR SINE MIR 2 206 -56 5966 54 1 0 chr13 44671498 44672183 -75072715 - L1PA7 LINE L1 -3 6151 5466 1982 158 3 0 chr13 44672217 44672688 -75072210 - AluSx SINE Alu 0 312 1 198 0 0 0 chr13 44672747 44672769 -75072129 + (T)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr13 44672773 44672798 -75072100 + AT_rich Low_complexity Low_complexity 1 25 0 44095 47 0 9 chr13 44672798 44678992 -75065906 - L1PA3 LINE L1 -7 6148 9 191 254 8 110 chr13 44679806 44679924 -75064974 - MIR SINE MIR -45 217 112 2193 121 0 7 chr13 44680445 44680751 -75064147 - AluSx SINE Alu -8 304 1 1661 188 46 56 chr13 44681978 44682371 -75062527 - MSTD LTR MaLR 0 396 8 228 86 0 0 chr13 44682654 44682689 -75062209 + (TC)n Simple_repeat Simple_repeat 2 36 0 630 195 30 67 chr13 44683264 44683482 -75061416 + MER106B DNA MER1_type 22 1058 -1 251 212 0 15 chr13 44683726 44683792 -75061106 + GA-rich Low_complexity Low_complexity 3 67 0 2536 47 0 13 chr13 44684133 44684431 -75060467 - AluY SINE Alu -17 294 1 308 282 34 34 chr13 44685477 44685594 -75059304 + MIR SINE MIR 34 150 -112 373 240 20 10 chr13 44685864 44685964 -75058934 - MLT1J2 LTR MaLR -287 163 63 453 36 0 0 chr13 44687515 44687570 -75057328 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 2206 125 0 3 chr13 44687570 44687874 -75057024 - AluSq SINE Alu -6 307 5 2309 98 3 0 chr13 44688015 44688322 -75056576 - AluSp SINE Alu -5 308 1 203 229 55 101 chr13 44688338 44688447 -75056451 + MER5A DNA MER1_type 64 167 -22 509 263 133 78 chr13 44688470 44688691 -75056207 + LTR33 LTR ERVL 1 249 -272 4047 134 123 7 chr13 44688691 44689428 -75055470 - LTR1B LTR ERV1 -2 824 2 509 263 133 78 chr13 44689428 44689552 -75055346 + LTR33 LTR ERVL 249 365 -156 1340 159 0 0 chr13 44691087 44691288 -75053610 + AluJb SINE Alu 111 311 -1 908 296 71 24 chr13 44691297 44691706 -75053192 + Charlie7 DNA MER1_type 89 516 -2096 741 259 123 13 chr13 44691737 44692054 -75052844 + Charlie7 DNA MER1_type 615 966 -1646 1074 262 118 32 chr13 44692062 44692281 -75052617 + L2 LINE L2 2219 2418 -895 502 43 0 0 chr13 44692281 44692350 -75052548 + L1PA2 LINE L1 6087 6155 0 1074 262 118 32 chr13 44692350 44693134 -75051764 + L2 LINE L2 2418 3313 0 1157 266 125 20 chr13 44693138 44693586 -75051312 + Charlie7 DNA MER1_type 977 1471 -1141 730 179 8 0 chr13 44693592 44693709 -75051189 + AluJ SINE Alu 2 119 -193 199 0 0 61 chr13 44693830 44693863 -75051035 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1048 147 6 6 chr13 44693867 44694023 -75050875 + AluJ SINE Alu 129 284 -28 1832 297 43 91 chr13 44694073 44694621 -75050277 + Charlie7 DNA MER1_type 1487 2060 -552 3202 63 55 26 chr13 44694621 44695078 -75049820 + L1PB2 LINE L1 5680 6149 -2 560 202 8 8 chr13 44695078 44695193 -75049705 - L1MB7 LINE L1 -18 6166 6038 1832 297 43 91 chr13 44695193 44695682 -75049216 + Charlie7 DNA MER1_type 2058 2543 -69 2540 61 0 3 chr13 44695684 44695981 -75048917 + AluY SINE Alu 1 296 -15 201 74 0 0 chr13 44695981 44696008 -75048890 + (TA)n Simple_repeat Simple_repeat 1 27 0 292 338 69 10 chr13 44697608 44697805 -75047093 - MIR SINE MIR -14 248 35 692 179 112 31 chr13 44697849 44698045 -75046853 + MIR SINE MIR 51 262 0 202 182 0 45 chr13 44698122 44698166 -75046732 + CT-rich Low_complexity Low_complexity 4 45 0 2054 130 3 7 chr13 44698241 44698540 -75046358 + AluSx SINE Alu 1 298 -14 270 275 143 37 chr13 44698610 44698799 -75046099 - MIR SINE MIR -34 228 20 215 279 35 35 chr13 44700756 44700828 -75044070 - MIR SINE MIR -57 151 80 1629 183 79 28 chr13 44700828 44701184 -75043714 + MLT1A2 LTR MaLR 1 374 0 215 279 35 35 chr13 44701184 44701197 -75043701 - MIR SINE MIR -127 81 69 2380 97 64 11 chr13 44701279 44701639 -75043259 - L1PA11 LINE L1 0 6174 5796 1802 216 68 7 chr13 44702638 44703078 -75041820 + MLT1C LTR MaLR 1 467 0 2051 148 3 0 chr13 44703316 44703613 -75041285 - AluSx SINE Alu -14 298 1 3266 184 21 2 chr13 44703627 44704231 -75040667 + L1MB2 LINE L1 5478 6093 -78 1837 68 63 0 chr13 44704992 44705229 -75039669 - AluY SINE Alu -11 300 49 298 360 20 0 chr13 44705422 44705575 -75039323 - LTR38-int LTR ERV1 -525 4429 4274 6302 187 67 72 chr13 44705973 44709154 -75035744 - LTR38-int LTR ERV1 -708 4415 885 507 173 0 0 chr13 44709153 44709234 -75035664 - LTR38-int LTR ERV1 -498 1288 1208 * 430 195 63 14 chr13 44709227 44709421 -75035477 - LTR57-int LTR ERVL -4636 707 438 * 500 236 58 42 chr13 44710099 44710290 -75034608 - LTR45B LTR ERV1 0 489 296 478 244 57 52 chr13 44710682 44710875 -75034023 + LTR45B LTR ERV1 296 489 0 306 225 70 0 chr13 44710875 44710941 -75033957 + MER21B LTR ERV1 681 751 -112 343 276 32 8 chr13 44711894 44712017 -75032881 + MIR3 SINE MIR 81 206 -2 422 127 0 0 chr13 44716326 44716389 -75028509 - MER116 DNA Mariner -16 64 2 242 229 117 10 chr13 44717083 44717180 -75027718 - MIR SINE MIR -46 162 56 220 313 40 13 chr13 44717979 44718129 -75026769 - MIR3 SINE MIR -8 200 47 858 204 82 66 chr13 44718384 44718688 -75026210 + L1MC5 LINE L1 7605 7913 -48 426 291 26 7 chr13 44718838 44718989 -75025909 + MIR SINE MIR 99 252 -10 2298 68 4 7 chr13 44719138 44719460 -75025438 + AluSc SINE Alu 2 322 0 243 253 0 38 chr13 44720171 44720250 -75024648 - MIR SINE MIR -56 206 131 316 331 45 25 chr13 44720266 44720423 -75024475 - MIR3 SINE MIR -21 187 28 383 223 36 18 chr13 44720487 44720599 -75024299 + MER5A DNA MER1_type 28 141 -48 182 262 79 56 chr13 44720498 44720624 -75024274 - MER5B DNA MER1_type -28 150 22 * 382 347 59 23 chr13 44721098 44721317 -75023581 - MIR SINE MIR -31 231 5 2388 209 109 20 chr13 44721324 44721912 -75022986 - MER82 DNA MER2_type -7 646 7 243 0 0 0 chr13 44723466 44723493 -75021405 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3328 129 30 60 chr13 44723500 44724136 -75020762 - L1MC1 LINE L1 -5 6328 5712 296 301 7 34 chr13 44724140 44724286 -75020612 + CT-rich Low_complexity Low_complexity 1 142 0 1009 178 31 11 chr13 44724343 44724534 -75020364 - MER20 DNA MER1_type 0 219 25 326 250 53 53 chr13 44724603 44724755 -75020143 - MER103 DNA DNA -12 154 3 750 250 11 0 chr13 44725043 44725219 -75019679 - MER5B DNA MER1_type 0 178 1 1939 130 35 7 chr13 44725709 44725994 -75018904 + AluJb SINE Alu 1 293 -19 4599 151 34 52 chr13 44727008 44727928 -75016970 + MER4D LTR ERV1 1 903 0 314 392 75 7 chr13 44728914 44729192 -75015706 + L2 LINE L2 2496 2792 -522 1524 163 115 9 chr13 44729423 44729761 -75015137 + MLT1A2 LTR MaLR 1 374 0 713 273 65 26 chr13 44729902 44730032 -75014866 + MIR SINE MIR 23 167 -95 1816 236 84 12 chr13 44730032 44730544 -75014354 - MLT1H LTR MaLR 0 549 1 713 273 65 26 chr13 44730544 44730644 -75014254 + MIR SINE MIR 167 262 0 306 292 21 0 chr13 44730825 44730921 -75013977 + MIR SINE MIR 165 262 0 539 128 0 0 chr13 44731132 44731210 -75013688 + MADE1 DNA Mariner 3 80 0 2275 91 0 7 chr13 44731227 44731535 -75013363 + AluY SINE Alu 1 306 0 306 261 158 67 chr13 44731539 44731869 -75013029 - L1MC5 LINE L1 -95 7866 7507 208 327 0 37 chr13 44732789 44732896 -75012002 + L2 LINE L2 2665 2767 -547 213 368 110 0 chr13 44733175 44733311 -75011587 + L2 LINE L2 2937 3087 -185 267 146 0 0 chr13 44733461 44733502 -75011396 + L2 LINE L2 3213 3253 -19 312 27 0 0 chr13 44734016 44734053 -75010845 + (CA)n Simple_repeat Simple_repeat 1 37 0 1360 158 85 95 chr13 44734466 44734829 -75010069 - MLT2B1 LTR ERVL -104 411 1 274 216 39 13 chr13 44735247 44735400 -75009498 + (TA)n Simple_repeat Simple_repeat 2 158 0 570 249 163 20 chr13 44735565 44735810 -75009088 - L2 LINE L2 0 3313 3034 1678 192 83 3 chr13 44735837 44736175 -75008723 - MLT1A1 LTR MaLR 0 365 1 3901 173 58 4 chr13 44736202 44736921 -75007977 - L1MCa LINE L1 -5649 777 20 336 264 138 0 chr13 44736940 44737107 -75007791 - L2 LINE L2 -254 3018 2829 216 0 0 0 chr13 44737207 44737231 -75007667 + (A)n Simple_repeat Simple_repeat 1 24 0 2401 88 3 0 chr13 44737307 44737604 -75007294 + AluSq SINE Alu 1 298 -15 2190 104 0 0 chr13 44738079 44738359 -75006539 + AluSx SINE Alu 1 280 -32 218 29 59 0 chr13 44738366 44738400 -75006498 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 785 236 0 6 chr13 44738985 44739150 -75005748 - FRAM SINE Alu -2 164 1 719 293 128 18 chr13 44739292 44739627 -75005271 - MLT1D LTR MaLR -133 372 1 189 0 0 0 chr13 44740431 44740452 -75004446 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 582 251 14 65 chr13 44740631 44740846 -75004052 + MIR SINE MIR 9 212 -50 1452 167 62 23 chr13 44740992 44741250 -75003648 - 7SLRNA srpRNA srpRNA -10 310 43 2235 107 13 0 chr13 44741263 44741561 -75003337 - AluSx SINE Alu -10 302 1 270 220 0 0 chr13 44741563 44741613 -75003285 - AluSg/x SINE Alu -115 187 138 626 267 54 33 chr13 44743372 44743612 -75001286 + MLT1J LTR MaLR 217 461 -50 922 287 36 58 chr13 44744324 44744553 -75000345 - MLT1I LTR MaLR 0 409 191 718 153 112 182 chr13 44744553 44744719 -75000179 - MER33 DNA MER1_type -2261 324 193 2500 67 0 3 chr13 44744719 44745018 -74999880 + AluY SINE Alu 1 298 -13 718 153 112 182 chr13 44745018 44745198 -74999700 - MER33 DNA MER1_type -2392 193 2 922 287 36 58 chr13 44745198 44745379 -74999519 - MLT1I LTR MaLR -218 191 8 2234 8 0 0 chr13 44745875 44746112 -74998786 - AluYb8 SINE Alu -8 310 74 2984 163 19 30 chr13 44746435 44746999 -74997899 - MER74A LTR ERVL 0 558 1 913 256 48 24 chr13 44748263 44748513 -74996385 - MIR SINE MIR 0 262 7 605 178 37 0 chr13 44748844 44748951 -74995947 - MLT1I LTR MaLR -3 406 296 2320 104 0 7 chr13 44749333 44749640 -74995258 + AluSx SINE Alu 6 310 -2 235 279 14 16 chr13 44750261 44750340 -74994558 + MIR SINE MIR 29 107 -101 2301 101 3 0 chr13 44751332 44751628 -74993270 - AluSx SINE Alu -15 297 1 1490 301 69 38 chr13 44752252 44753005 -74991893 + L2 LINE L2 2292 3077 -236 2583 49 0 0 chr13 44753005 44753312 -74991586 + AluY SINE Alu 1 307 -4 1490 301 69 38 chr13 44753312 44753500 -74991398 + L2 LINE L2 3077 3258 -55 249 119 0 0 chr13 44753519 44753561 -74991337 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 1563 245 102 47 chr13 44754419 44754978 -74989920 + MLT1G LTR MaLR 1 590 0 272 296 173 12 chr13 44754991 44755153 -74989745 + MIR SINE MIR 21 208 -54 763 262 28 14 chr13 44755574 44755788 -74989110 + MIR SINE MIR 20 236 -26 303 293 179 7 chr13 44755812 44755952 -74988946 + MER5A DNA MER1_type 20 183 -6 2194 117 0 28 chr13 44756374 44756691 -74988207 - AluSx SINE Alu 0 312 5 700 294 57 11 chr13 44758713 44758978 -74985920 - L1ME4a LINE L1 -234 5887 5611 1830 214 74 36 chr13 44759023 44759082 -74985816 - MER39 LTR ERV1 0 707 652 3021 160 65 24 chr13 44759082 44759701 -74985197 - LTR48B LTR ERV1 0 644 1 1830 214 74 36 chr13 44759701 44760183 -74984715 - MER39 LTR ERV1 -55 652 6 625 175 16 104 chr13 44760451 44760519 -74984379 + MER96B DNA MER1_type? 250 322 -95 1394 209 84 23 chr13 44760519 44760863 -74984035 - MLT1A1 LTR MaLR 0 365 1 625 175 16 104 chr13 44760863 44760977 -74983921 + MER96B DNA MER1_type? 322 416 -1 2201 122 18 42 chr13 44761658 44762042 -74982856 - THE1C LTR MaLR 0 375 1 215 130 0 43 chr13 44762047 44762093 -74982805 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 3495 70 5 0 chr13 44762106 44762546 -74982352 - MLT2A1 LTR ERVL -2 442 1 2654 63 11 0 chr13 44762546 44762894 -74982004 - HERVL-A1 LTR ERVL 0 5654 5303 43619 64 7 3 chr13 44763049 44768374 -74976524 - HERVL-A1 LTR ERVL -306 5348 1 3092 75 58 0 chr13 44768374 44768790 -74976108 - MLT2A1 LTR ERVL 0 444 5 1566 180 26 7 chr13 44768793 44769065 -74975833 - AluJb SINE Alu -35 277 1 282 237 193 0 chr13 44769069 44769183 -74975715 + MIR SINE MIR 117 252 -10 323 285 58 22 chr13 44769185 44769322 -74975576 + MLT1J LTR MaLR 1 142 -369 206 247 94 24 chr13 44769338 44769423 -74975475 - MIR3 SINE MIR -3 205 115 * 467 193 155 68 chr13 44769406 44769518 -74975380 + MER5A DNA MER1_type 15 147 -42 1580 172 6 63 chr13 44769518 44769849 -74975049 + AluJo SINE Alu 1 312 0 467 193 155 68 chr13 44769849 44769897 -74975001 + MER5A DNA MER1_type 147 189 0 403 278 9 28 chr13 44770701 44770809 -74974089 + MLT1L LTR MaLR 2 107 -508 371 271 10 85 chr13 44770863 44771062 -74973836 + L2 LINE L2 3113 3296 -17 244 239 43 54 chr13 44771083 44771175 -74973723 - L2 LINE L2 0 3272 3182 323 224 15 119 chr13 44771207 44771341 -74973557 + MER21B LTR ERV1 329 448 -415 256 0 24 49 chr13 44772013 44772054 -74972844 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2603 108 23 83 chr13 44772964 44773436 -74971462 - MER65A LTR ERV1 0 445 2 190 280 80 40 chr13 44773467 44773542 -74971356 - L2 LINE L2 -8 3264 3187 232 287 123 0 chr13 44773678 44773800 -74971098 - L2 LINE L2 -211 3061 2925 1983 163 34 0 chr13 44773821 44774176 -74970722 - MER34B LTR ERV1 0 565 199 2990 184 105 5 chr13 44774176 44774875 -74970023 + MER21B LTR ERV1 1 802 -61 1440 96 41 5 chr13 44774928 44775148 -74969750 - MER34B LTR ERV1 -361 204 1 497 251 33 20 chr13 44775485 44775758 -74969140 - MER20B DNA MER1_type -74 709 396 1625 182 27 90 chr13 44776241 44776495 -74968403 + MER31B LTR ERV1 7 275 -386 1661 179 7 13 chr13 44776495 44776797 -74968101 - AluJb SINE Alu -12 300 1 1625 182 27 90 chr13 44776797 44777019 -74967879 + MER31B LTR ERV1 275 648 -13 201 39 0 0 chr13 44777228 44777254 -74967644 + (TTG)n Simple_repeat Simple_repeat 2 27 0 198 0 0 0 chr13 44778657 44778679 -74966219 + (A)n Simple_repeat Simple_repeat 1 22 0 3166 156 139 38 chr13 44779867 44780571 -74964327 - LTR48 LTR ERV1 -10 777 3 331 197 16 0 chr13 44780590 44780651 -74964247 + LTR67 LTR ERVL 494 555 -2 300 229 33 0 chr13 44780689 44780750 -74964148 + MER91B DNA MER1_type 2 64 -126 1790 241 56 26 chr13 44780989 44781491 -74963407 + MER74B LTR ERVL 56 572 -50 1321 196 5 0 chr13 44782074 44782294 -74962604 + MER58A DNA MER1_type 4 224 0 643 246 63 116 chr13 44782480 44782878 -74962020 + LTR40a LTR ERVL 1 377 -142 878 179 0 27 chr13 44783513 44783697 -74961201 + MER53 DNA DNA 2 180 -9 1639 121 124 8 chr13 44783803 44784083 -74960815 - AluSg SINE Alu -29 281 4 396 298 121 0 chr13 44785329 44785470 -74959428 + MER5A DNA MER1_type 29 186 -3 1401 148 7 1 chr13 44787792 44788097 -74956801 - MER2 DNA MER2_type -1 344 2 * 2035 187 64 10 chr13 44788097 44788503 -74956395 + MER63B DNA MER1_type 8 435 -1 714 293 27 18 chr13 44788659 44788884 -74956014 + MIR SINE MIR 32 258 -4 1669 161 13 17 chr13 44789389 44789687 -74955211 - AluJo SINE Alu -15 297 1 276 332 58 8 chr13 44789844 44789985 -74954913 + MIR SINE MIR 18 146 -62 304 297 135 42 chr13 44791109 44791301 -74953597 + L3b LINE CR1 1120 1329 -254 242 224 0 0 chr13 44792365 44792423 -74952475 + A-rich Low_complexity Low_complexity 1 58 0 378 139 0 0 chr13 44793034 44793106 -74951792 + (TGG)n Simple_repeat Simple_repeat 1 72 0 270 0 0 0 chr13 44793305 44793335 -74951563 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 225 65 0 0 chr13 44793518 44793549 -74951349 + (T)n Simple_repeat Simple_repeat 1 31 0 272 233 137 0 chr13 44793982 44794055 -74950843 - L2 LINE L2 -16 3256 3174 213 321 92 9 chr13 44794133 44794242 -74950656 - MIR SINE MIR -109 153 36 307 292 11 11 chr13 44794642 44794731 -74950167 + (CA)n Simple_repeat Simple_repeat 2 90 0 25 31 0 0 chr13 44795110 44795142 -74949756 + AT_rich Low_complexity Low_complexity 1 32 0 487 233 53 27 chr13 44795451 44795601 -74949297 - MIR SINE MIR -77 185 32 196 243 230 14 chr13 44795670 44795744 -74949154 + MIR SINE MIR 120 209 -53 457 222 111 15 chr13 44796125 44796260 -74948638 - LTR33 LTR ERVL -304 217 70 323 304 182 46 chr13 44796436 44796846 -74948052 - L2 LINE L2 -1 3271 2791 635 25 12 0 chr13 44798458 44798539 -74946359 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 1949 144 0 0 chr13 44798542 44798826 -74946072 - AluSx SINE Alu -28 284 1 181 270 191 0 chr13 44799694 44799757 -74945141 + L2 LINE L2 3158 3232 -40 1664 151 65 0 chr13 44800019 44800310 -74944588 + AluJb SINE Alu 1 310 -2 272 264 82 27 chr13 44800326 44800436 -74944462 + L2 LINE L2 3179 3294 -19 331 87 0 0 chr13 44800437 44800483 -74944415 + MADE1 DNA Mariner 1 46 -34 207 0 0 0 chr13 44800493 44800516 -74944382 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 772 320 114 20 chr13 44801100 44801450 -74943448 + MER115 DNA AcHobo 75 457 -236 1979 141 0 0 chr13 44801480 44801777 -74943121 - AluSq SINE Alu -16 297 1 547 275 27 0 chr13 44801777 44801926 -74942972 + MER115 DNA AcHobo 541 693 0 343 304 51 43 chr13 44802617 44802755 -74942143 + L2 LINE L2 3134 3272 0 205 250 213 0 chr13 44802788 44802868 -74942030 + L2 LINE L2 2540 2636 -678 1107 210 126 43 chr13 44802868 44803216 -74941682 + MLT1D LTR MaLR 1 377 -128 1096 98 0 0 chr13 44803216 44803359 -74941539 - AluSg/x SINE Alu -16 296 154 2683 97 8 3 chr13 44803568 44803930 -74940968 + THE1B LTR MaLR 1 364 0 1628 199 122 99 chr13 44804074 44804723 -74940175 - LTR49-int LTR ERV1 -5208 1123 460 712 125 0 27 chr13 44804734 44804846 -74940052 + LTR40a LTR ERVL 404 512 -7 1527 226 63 53 chr13 44804853 44805363 -74939535 + L1ME3 LINE L1 5646 6160 -2 496 245 157 25 chr13 44806699 44806858 -74938040 - MER5A DNA MER1_type 0 189 10 352 298 57 16 chr13 44807455 44807579 -74937319 - L2 LINE L2 -2 3311 3183 1181 233 8 4 chr13 44807692 44807954 -74936944 + MER93a LTR ERV1 139 401 -1 219 341 82 22 chr13 44808369 44808504 -74936394 + MIR SINE MIR 61 203 -59 373 338 25 20 chr13 44808607 44808805 -74936093 - MIR SINE MIR -43 219 21 396 293 31 16 chr13 44809156 44809347 -74935551 - L1ME4a LINE L1 -2 6119 5926 2190 103 3 6 chr13 44811142 44811453 -74933445 + AluSx SINE Alu 1 310 -2 2197 89 10 0 chr13 44811909 44812201 -74932697 + AluSq SINE Alu 1 295 -18 183 80 0 0 chr13 44812382 44812407 -74932491 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 254 283 59 138 chr13 44812430 44812734 -74932164 - L2 LINE L2 -50 3222 2943 21 36 0 0 chr13 44813182 44813210 -74931688 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr13 44813282 44813320 -74931578 + AT_rich Low_complexity Low_complexity 1 38 0 1712 174 20 0 chr13 44813375 44813674 -74931224 + L1MB7 LINE L1 5828 6132 -52 * 6497 161 30 5 chr13 44813667 44814083 -74930815 + L1PA16 LINE L1 3974 4378 -1788 423 0 0 0 chr13 44814083 44814130 -74930768 + (CA)n Simple_repeat Simple_repeat 2 48 0 6497 161 30 5 chr13 44814130 44815854 -74929044 + L1PA16 LINE L1 4378 6165 -1 366 274 50 13 chr13 44815941 44816100 -74928798 + L1ME4a LINE L1 4032 4196 -1950 589 302 109 30 chr13 44816199 44816603 -74928295 + L1ME4a LINE L1 4395 4830 -1316 3431 169 38 92 chr13 44816925 44817846 -74927052 - MER63C DNA MER1_type -24 906 36 340 236 128 24 chr13 44818725 44818975 -74925923 + L1ME4a LINE L1 5843 6118 -3 551 273 164 9 chr13 44820116 44820336 -74924562 + MIR SINE MIR 2 255 -7 1083 149 0 0 chr13 44820592 44820760 -74924138 - AluJb SINE Alu -22 290 123 340 279 29 69 chr13 44821324 44821548 -74923350 - MIR SINE MIR -22 240 19 219 125 0 0 chr13 44821781 44821821 -74923077 + (CA)n Simple_repeat Simple_repeat 2 41 0 1669 205 16 32 chr13 44822622 44822686 -74922212 - MLT1A2 LTR MaLR -2 372 308 500 100 0 12 chr13 44822686 44822766 -74922132 - MADE1 DNA Mariner -1 79 1 1669 205 16 32 chr13 44822766 44823076 -74921822 - MLT1A2 LTR MaLR -66 308 4 2471 56 0 3 chr13 44823076 44823381 -74921517 + AluY SINE Alu 1 304 -7 294 285 68 104 chr13 44823431 44823680 -74921218 - L2 LINE L2 -99 3173 2934 520 77 0 121 chr13 44823813 44823852 -74921046 + MADE1 DNA Mariner 1 24 -56 2028 114 10 0 chr13 44823852 44824142 -74920756 - AluSx SINE Alu -19 293 1 520 77 0 121 chr13 44824142 44824193 -74920705 + MADE1 DNA Mariner 24 80 0 2352 140 22 16 chr13 44824279 44824650 -74920248 + MLT2D LTR ERVL 2 374 -40 183 156 0 0 chr13 44824653 44824685 -74920213 + (TATG)n Simple_repeat Simple_repeat 3 34 0 467 279 64 6 chr13 44825092 44825264 -74919634 - MIR SINE MIR -67 195 14 454 267 25 0 chr13 44826119 44826239 -74918659 + MIR SINE MIR 116 238 -24 1806 163 81 0 chr13 44826257 44826577 -74918321 + MER7A DNA MER2_type 2 345 -1 1047 184 27 68 chr13 44826577 44826868 -74918030 + MLT1D LTR MaLR 72 350 -155 306 236 97 0 chr13 44826888 44826960 -74917938 - MIR SINE MIR -58 204 126 1232 257 43 3 chr13 44827147 44827450 -74917448 + LTR16C LTR ERVL 177 491 0 1988 199 68 19 chr13 44827529 44828001 -74916897 - MLT1D LTR MaLR -8 497 3 261 242 99 22 chr13 44828050 44828141 -74916757 - L2 LINE L2 -50 3263 3166 226 290 101 57 chr13 44828193 44828441 -74916457 + MLT1J LTR MaLR 253 511 0 1396 255 79 18 chr13 44828866 44828947 -74915951 + MER115 DNA AcHobo 160 235 -458 1250 176 58 105 chr13 44828947 44829328 -74915570 - MLT1A1 LTR MaLR -2 363 1 1396 255 79 18 chr13 44829328 44829701 -74915197 + MER115 DNA AcHobo 235 642 -51 1561 175 153 41 chr13 44830130 44830548 -74914350 + MLT1C LTR MaLR 3 467 0 250 197 66 0 chr13 44830631 44830692 -74914206 + L2 LINE L2 3238 3302 -11 306 0 0 0 chr13 44831640 44831674 -74913224 + (TA)n Simple_repeat Simple_repeat 2 35 0 360 188 135 23 chr13 44831675 44831808 -74913090 + L1ME4a LINE L1 5971 6118 -3 281 323 115 0 chr13 44832118 44832248 -74912650 - L3b LINE CR1 -188 1395 1251 644 246 29 23 chr13 44832297 44832468 -74912430 - MER5B DNA MER1_type -6 172 1 305 182 0 0 chr13 44832968 44833023 -74911875 + MIR SINE MIR 83 137 -125 739 130 9 0 chr13 44833054 44833169 -74911729 - L1PA16 LINE L1 -18 6148 6033 204 299 58 36 chr13 44833214 44833351 -74911547 - MIR SINE MIR -74 188 49 480 238 8 66 chr13 44833622 44833744 -74911154 + MER5B DNA MER1_type 64 178 0 595 51 0 0 chr13 44833943 44834021 -74910877 + Alu SINE Alu 228 305 -4 545 335 143 30 chr13 44835070 44835440 -74909458 + L2 LINE L2 2887 3298 -15 1143 113 0 0 chr13 44835442 44835679 -74909219 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 182 256 0 0 chr13 44835859 44835898 -74909000 - L2 LINE L2 -97 3175 3137 530 287 92 35 chr13 44836300 44836656 -74908242 + MLT1J LTR MaLR 209 509 -2 655 161 188 7 chr13 44837050 44837199 -74907699 + MER45A DNA AcHobo 1 176 -2 483 256 58 7 chr13 44837202 44837339 -74907559 + MIR SINE MIR 65 208 -54 192 250 19 0 chr13 44837533 44837585 -74907313 + L2 LINE L2 3220 3272 0 294 311 8 8 chr13 44838239 44838361 -74906537 - MIR SINE MIR -74 188 67 732 169 19 106 chr13 44838392 44838482 -74906416 - L1ME3 LINE L1 -29 6133 6070 1945 137 0 20 chr13 44838482 44838774 -74906124 + AluJo SINE Alu 1 286 -26 732 169 19 106 chr13 44838774 44838890 -74906008 - L1ME3 LINE L1 -92 6070 5945 1273 284 93 21 chr13 44839096 44839697 -74905201 - MER115 DNA AcHobo 0 693 5 2130 117 0 0 chr13 44840058 44840402 -74904496 + AluSx SINE Alu 1 344 0 529 282 25 49 chr13 44840647 44840892 -74904006 - L2 LINE L2 0 3313 3075 186 221 232 11 chr13 44840935 44841030 -74903868 - L2 LINE L2 -18 3295 3180 3225 184 52 6 chr13 44841338 44842027 -74902871 - L1MB4 LINE L1 0 6180 5460 315 71 0 0 chr13 44842628 44842670 -74902228 + (CA)n Simple_repeat Simple_repeat 2 43 0 305 254 43 87 chr13 44842781 44842966 -74901932 - MIR SINE MIR -51 211 35 180 176 0 0 chr13 44843163 44843197 -74901701 + A-rich Low_complexity Low_complexity 1 34 0 762 183 62 52 chr13 44843926 44844130 -74900768 + MIR SINE MIR 41 251 -11 802 234 82 20 chr13 44844612 44844856 -74900042 - MIR SINE MIR 0 262 4 225 253 13 40 chr13 44845131 44845206 -74899692 - L2 LINE L2 0 3272 3200 1529 117 0 0 chr13 44845391 44845597 -74899301 + L1PA11 LINE L1 5665 5870 -304 2269 86 40 20 chr13 44845603 44845953 -74898945 + L1PA11 LINE L1 5817 6173 -1 685 160 0 53 chr13 44846608 44846796 -74898102 + GA-rich Low_complexity Low_complexity 3 180 0 366 329 99 9 chr13 44846814 44847027 -74897871 - MIR SINE MIR -6 256 25 263 320 107 0 chr13 44847299 44847402 -74897496 - MIR SINE MIR -58 150 37 200 233 0 0 chr13 44848372 44848415 -74896483 + T-rich Low_complexity Low_complexity 1 43 0 2383 92 0 0 chr13 44848712 44849017 -74895881 + AluY SINE Alu 1 305 -6 2039 131 3 0 chr13 44849137 44849427 -74895471 + AluSx SINE Alu 1 291 -21 622 224 101 22 chr13 44849450 44849629 -74895269 + MIR SINE MIR 65 257 -5 423 196 93 0 chr13 44849648 44849745 -74895153 - LTR16C LTR ERVL -1 490 385 291 269 177 14 chr13 44850025 44850166 -74894732 + MIR SINE MIR 63 226 -36 207 293 0 24 chr13 44851132 44851214 -74893684 + MIR SINE MIR 47 126 -82 224 280 224 84 chr13 44851441 44851517 -74893381 - MIR SINE MIR -1 261 197 1817 147 7 20 chr13 44851517 44851809 -74893089 - AluJo SINE Alu -24 288 1 224 280 224 84 chr13 44851809 44851946 -74892952 - MIR SINE MIR -65 197 18 243 0 0 0 chr13 44852196 44852223 -74892675 + (TG)n Simple_repeat Simple_repeat 2 28 0 12172 131 50 9 chr13 44853024 44854959 -74889939 + Ricksha_c DNA DNA 8 2021 -25 2462 88 0 0 chr13 44855243 44855551 -74889347 - AluSq SINE Alu -5 308 1 288 111 0 0 chr13 44856777 44856822 -74888076 + (TG)n Simple_repeat Simple_repeat 2 46 0 191 369 18 0 chr13 44858704 44858815 -74886083 - MIR SINE MIR -63 145 33 405 0 0 0 chr13 44860081 44860126 -74884772 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 206 16 79 chr13 44862840 44862903 -74881995 + L2 LINE L2 3177 3235 -78 3309 163 20 18 chr13 44863063 44863666 -74881232 - L1MC1 LINE L1 -3 6330 5727 318 180 34 67 chr13 44863666 44863755 -74881143 - L1MC1 LINE L1 -1160 4986 4901 2881 213 18 3 chr13 44863756 44864382 -74880516 - L1MC1 LINE L1 -1714 4432 3798 214 250 15 15 chr13 44864405 44864473 -74880425 + MIR SINE MIR 84 151 -111 318 316 85 11 chr13 44865019 44865196 -74879702 + MIR SINE MIR 37 226 -36 180 0 0 0 chr13 44865226 44865246 -74879652 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2050 246 63 35 chr13 44865278 44865843 -74879055 + L1ME3A LINE L1 5488 6075 -95 2377 186 31 7 chr13 44865843 44866299 -74878599 + MLT1C LTR MaLR 1 467 0 2050 246 63 35 chr13 44866299 44866387 -74878511 + L1ME3A LINE L1 6075 6159 -11 283 202 125 87 chr13 44866720 44866824 -74878074 + L1M3c LINE L1 1 108 -6033 362 167 0 14 chr13 44866825 44866897 -74878001 + L1MA10 LINE L1 6262 6332 -2 211 189 45 36 chr13 44867011 44867122 -74877776 + (TATAA)n Simple_repeat Simple_repeat 3 114 0 474 253 52 105 chr13 44867260 44867489 -74877409 - MIR SINE MIR 0 262 46 572 216 34 110 chr13 44867523 44867600 -74877298 + L1ME4a LINE L1 5539 5620 -501 2081 137 7 0 chr13 44867600 44867893 -74877005 - AluSx SINE Alu -17 295 1 572 216 34 110 chr13 44867893 44868143 -74876755 + L1ME4a LINE L1 5620 5841 -280 * 618 284 126 13 chr13 44868135 44868589 -74876309 + L1MC4a LINE L1 5664 6168 -1640 1841 222 93 38 chr13 44868830 44869326 -74875572 + MLT1F1 LTR MaLR 45 567 0 304 281 141 0 chr13 44869329 44869457 -74875441 + MLT1F1-int LTR MaLR 5 150 -1221 2399 77 31 6 chr13 44869546 44869871 -74875027 + L1PA8 LINE L1 5835 6167 -5 289 111 22 0 chr13 44870237 44870282 -74874616 - AluSp/q SINE Alu -72 231 186 520 227 45 148 chr13 44870290 44870620 -74874278 + MLT1F1-int LTR MaLR 1074 1369 -2 1754 293 25 6 chr13 44870624 44871142 -74873756 + MLT1F1 LTR MaLR 14 541 -26 301 159 14 14 chr13 44871322 44871391 -74873507 + GA-rich Low_complexity Low_complexity 6 74 0 2759 201 50 76 chr13 44871408 44871445 -74873453 + L1MC5 LINE L1 6636 6672 -1289 1750 128 6 62 chr13 44871445 44871765 -74873133 + AluJb SINE Alu 3 304 -8 2759 201 50 76 chr13 44871765 44872581 -74872317 + L1MC5 LINE L1 6672 7467 -494 29 70 0 0 chr13 44872795 44872852 -74872046 + AT_rich Low_complexity Low_complexity 1 57 0 266 73 24 0 chr13 44873740 44873781 -74871117 + (TCC)n Simple_repeat Simple_repeat 1 42 0 321 328 96 0 chr13 44874130 44874307 -74870591 - L1ME LINE L1 -372 5749 5556 2166 139 34 65 chr13 44874808 44875226 -74869672 - MLT2D LTR ERVL -7 407 3 902 295 29 9 chr13 44876064 44876379 -74868519 + L1ME4a LINE L1 5503 5823 -298 2583 144 8 8 chr13 44876460 44876862 -74868036 + MER57A LTR ERV1 2 403 0 234 260 130 8 chr13 44876964 44877087 -74867811 + L1ME4a LINE L1 5981 6118 -3 2177 83 0 0 chr13 44877100 44877365 -74867533 - AluSg SINE Alu -11 299 35 229 278 0 0 chr13 44877807 44877861 -74867037 + (TG)n Simple_repeat Simple_repeat 2 55 0 362 206 15 29 chr13 44879162 44879298 -74865600 + CT-rich Low_complexity Low_complexity 4 137 0 3988 52 19 0 chr13 44880287 44880768 -74864130 - LTR2B LTR ERV1 0 490 1 351 113 0 0 chr13 44881290 44881343 -74863555 + (CA)n Simple_repeat Simple_repeat 2 54 0 1570 190 14 17 chr13 44882540 44882835 -74862063 + AluJo SINE Alu 1 294 -18 572 233 39 73 chr13 44883475 44883681 -74861217 - MER112 DNA MER1_type 0 260 62 2104 132 3 13 chr13 44883705 44884016 -74860882 - AluSx SINE Alu -4 308 1 686 250 28 14 chr13 44884304 44884516 -74860382 - L1ME3A LINE L1 -264 5906 5692 1106 187 9 0 chr13 44884626 44884845 -74860053 - L1 LINE L1 -3275 2871 2651 1839 179 108 56 chr13 44885025 44885546 -74859352 - LTR10A LTR ERV1 -61 548 1 239 250 28 90 chr13 44886203 44886347 -74858551 + MIR SINE MIR 63 197 -65 1239 158 111 88 chr13 44886489 44886543 -74858355 - MLT2C1 LTR ERVL -35 485 434 2170 103 10 0 chr13 44886543 44886844 -74858054 + AluSg SINE Alu 1 304 -6 1239 158 111 88 chr13 44886844 44887003 -74857895 - MLT2C1 LTR ERVL -86 434 280 1590 140 163 35 chr13 44887003 44887081 -74857817 + MLT1B LTR MaLR 4 71 -319 2140 110 7 0 chr13 44887081 44887380 -74857518 - AluSg SINE Alu -8 302 2 1590 140 163 35 chr13 44887380 44887644 -74857254 + MLT1B LTR MaLR 71 390 0 1239 158 111 88 chr13 44887644 44887761 -74857137 - MLT2C1 LTR ERVL -240 280 30 350 263 73 22 chr13 44887739 44887876 -74857022 - MER46C DNA MER2_type -115 223 80 * 558 217 31 0 chr13 44888090 44888219 -74856679 - MIR SINE MIR -70 192 60 280 292 56 56 chr13 44888703 44888864 -74856034 + MIR SINE MIR 50 210 -52 5936 182 24 11 chr13 44889370 44890591 -74854307 + L1 LINE L1 2304 3540 -2606 548 125 11 0 chr13 44891127 44891215 -74853683 - L1MB3 LINE L1 -7 6176 6088 418 289 96 12 chr13 44891516 44891682 -74853216 - MIR SINE MIR -6 256 77 1858 212 21 24 chr13 44893124 44893549 -74851349 - MLT1C LTR MaLR -43 424 1 616 231 0 27 chr13 44893550 44893697 -74851201 - LTR16C LTR ERVL -9 482 340 22 0 0 0 chr13 44893998 44894020 -74850878 + AT_rich Low_complexity Low_complexity 1 22 0 226 245 0 0 chr13 44894204 44894257 -74850641 + L2 LINE L2 3261 3313 0 2280 192 53 13 chr13 44895180 44895284 -74849614 + L1MB5 LINE L1 5690 5788 -386 228 35 0 0 chr13 44895284 44895313 -74849585 + (CA)n Simple_repeat Simple_repeat 1 29 0 2280 192 53 13 chr13 44895313 44895421 -74849477 + L1MB5 LINE L1 5788 5890 -284 2584 133 35 41 chr13 44895421 44895499 -74849399 - MSTB2 LTR MaLR 0 457 380 1765 125 54 4 chr13 44895499 44895778 -74849120 + AluSx SINE Alu 20 312 0 2584 133 35 41 chr13 44895778 44896159 -74848739 - MSTB2 LTR MaLR -77 380 1 2280 192 53 13 chr13 44896159 44896399 -74848499 + L1MB5 LINE L1 5890 6161 -13 420 246 69 91 chr13 44897283 44897458 -74847440 - MIR SINE MIR -71 191 21 1713 143 14 7 chr13 44897794 44898106 -74846792 - AluJb SINE Alu 0 314 1 327 310 169 0 chr13 44898127 44898311 -74846587 + Charlie8 DNA MER1_type 61 275 -2142 189 233 256 0 chr13 44898677 44898763 -74846135 - L2 LINE L2 -4 3268 3161 216 227 91 30 chr13 44899586 44899652 -74845246 + L2 LINE L2 3203 3272 0 2358 39 0 0 chr13 44899927 44900208 -74844690 - AluY SINE Alu -10 301 21 195 42 0 0 chr13 44900537 44900561 -74844337 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 330 268 122 61 chr13 44900940 44901104 -74843794 + MIR SINE MIR 45 218 -44 509 236 45 0 chr13 44901408 44901518 -74843380 - MIR SINE MIR -76 186 72 449 288 89 0 chr13 44901684 44901830 -74843068 + MIR SINE MIR 103 261 -1 207 159 0 43 chr13 44901896 44901965 -74842933 + GA-rich Low_complexity Low_complexity 3 68 0 1982 171 28 6 chr13 44902465 44902822 -74842076 - MLT1A1 LTR MaLR 0 365 1 211 293 13 40 chr13 44904375 44904450 -74840448 - L2 LINE L2 -7 3265 3193 699 155 10 10 chr13 44906265 44906459 -74838439 + CT-rich Low_complexity Low_complexity 1 194 0 256 297 79 10 chr13 44906459 44906560 -74838338 - L2 LINE L2 -17 3255 3148 265 316 46 64 chr13 44906563 44906749 -74838149 + MER5A DNA MER1_type 4 177 -1 197 307 54 108 chr13 44906781 44906947 -74837951 - L2 LINE L2 -150 3122 2966 181 374 55 23 chr13 44907003 44907222 -74837676 - L2 LINE L2 -437 2877 2652 1780 83 14 54 chr13 44907235 44907512 -74837386 - AluY SINE Alu -6 305 40 1534 208 23 32 chr13 44909307 44909653 -74835245 - MER61A LTR ERV1 0 343 1 365 272 88 22 chr13 44909988 44910124 -74834774 + MER20B DNA MER1_type 35 179 -604 2066 110 0 0 chr13 44911512 44911820 -74833078 - AluSx SINE Alu 0 308 1 393 225 14 133 chr13 44911936 44912154 -74832744 - L2 LINE L2 -87 3226 3035 574 172 0 0 chr13 44912280 44912379 -74832519 - MER5A DNA MER1_type -76 113 15 219 288 68 51 chr13 44912382 44912500 -74832398 + L2 LINE L2 3152 3271 -1 332 312 102 37 chr13 44913184 44913399 -74831499 + MIR SINE MIR 28 256 -6 241 258 98 36 chr13 44913647 44913841 -74831057 - L2 LINE L2 -212 3060 2855 204 258 79 11 chr13 44914161 44914250 -74830648 + L2 LINE L2 1608 1702 -1612 763 146 23 15 chr13 44914265 44914395 -74830503 + FLAM_C SINE Alu 3 133 0 392 153 68 51 chr13 44914587 44914705 -74830193 - L1ME4a LINE L1 -41 6080 5961 230 200 20 0 chr13 44914706 44914756 -74830142 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 303 294 132 64 chr13 44914821 44915025 -74829873 - L1ME4a LINE L1 -295 5826 5609 255 31 0 0 chr13 44915025 44915057 -74829841 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1298 159 61 81 chr13 44915059 44915354 -74829544 - AluJo SINE Alu -23 289 1 1799 118 0 0 chr13 44915766 44916020 -74828878 - AluSx SINE Alu -20 292 39 512 318 108 10 chr13 44917215 44917511 -74827387 - L2 LINE L2 -1 3312 2988 284 269 11 32 chr13 44917525 44917618 -74827280 + MIR3 SINE MIR 104 194 -14 1227 216 34 40 chr13 44917784 44918108 -74826790 + L1MB3 LINE L1 5566 5887 -296 794 191 30 50 chr13 44918109 44918308 -74826590 + L1MB3 LINE L1 5989 6183 0 563 259 7 34 chr13 44918783 44918930 -74825968 + MER5A DNA MER1_type 44 186 -3 451 239 128 0 chr13 44920096 44920205 -74824693 - MER45 DNA AcHobo -55 123 1 291 179 0 0 chr13 44920767 44920834 -74824064 + GA-rich Low_complexity Low_complexity 2 68 0 467 305 47 26 chr13 44921425 44921615 -74823283 - L2 LINE L2 0 3313 3120 715 187 58 6 chr13 44921839 44922010 -74822888 + Charlie5 DNA MER1_type 24 203 -2409 2734 149 23 13 chr13 44922019 44922490 -74822408 + L1PA16 LINE L1 5683 6158 -8 621 238 46 11 chr13 44922545 44922728 -74822170 - L1ME4a LINE L1 -749 5397 5201 1800 140 19 7 chr13 44922728 44923036 -74821862 - AluSx SINE Alu 0 312 1 621 238 46 11 chr13 44923036 44923113 -74821785 - L1ME4a LINE L1 -945 5201 5128 253 281 110 0 chr13 44923115 44923197 -74821701 - MIR SINE MIR -49 213 123 196 351 75 11 chr13 44923185 44923279 -74821619 - MIR3 SINE MIR -97 111 12 * 1270 142 109 29 chr13 44924190 44924429 -74820469 + MER52A LTR ERV1 1 258 -1497 1028 188 10 10 chr13 44924397 44924589 -74820309 + MER52A LTR ERV1 361 552 -1203 * 733 162 81 25 chr13 44924646 44924844 -74820054 + Charlie5 DNA MER1_type 2353 2561 -51 311 226 16 0 chr13 44925543 44925605 -74819293 - MER69 DNA AcHobo -3 2523 2461 352 51 39 26 chr13 44925623 44925701 -74819197 + (TA)n Simple_repeat Simple_repeat 1 79 0 1462 146 16 4 chr13 44925703 44925949 -74818949 - AluJo SINE Alu -39 273 25 346 221 74 0 chr13 44925970 44926065 -74818833 - MER69 DNA AcHobo -1098 128 27 834 190 49 12 chr13 44926081 44926244 -74818654 + MER5A DNA MER1_type 21 189 0 * 908 285 16 16 chr13 44926244 44926487 -74818411 + MIR SINE MIR 9 254 -8 17976 123 16 8 chr13 44926487 44926623 -74818275 - Tigger4(Zombi) DNA MER2_type 0 2731 2598 2020 118 0 13 chr13 44926623 44926927 -74817971 + AluSx SINE Alu 1 300 -12 17976 123 16 8 chr13 44926927 44929500 -74815398 - Tigger4(Zombi) DNA MER2_type -133 2598 1 2344 68 0 0 chr13 44929871 44930167 -74814731 + AluY SINE Alu 1 296 -15 1637 173 0 23 chr13 44931372 44931673 -74813225 + AluJo SINE Alu 1 294 -18 1583 186 6 13 chr13 44931702 44932013 -74812885 + AluJb SINE Alu 1 309 -3 21 36 0 0 chr13 44932072 44932100 -74812798 + AT_rich Low_complexity Low_complexity 1 28 0 2109 95 0 48 chr13 44932107 44932423 -74812475 + AluSx SINE Alu 6 306 -6 282 307 149 18 chr13 44932726 44932840 -74812058 + MIR SINE MIR 86 214 -48 454 288 36 14 chr13 44933182 44933321 -74811577 - MIR SINE MIR -115 147 6 1000 176 11 5 chr13 44933325 44933512 -74811386 + MER5A DNA MER1_type 1 188 -1 285 98 0 0 chr13 44933942 44933983 -74810915 + (TA)n Simple_repeat Simple_repeat 1 41 0 400 220 100 10 chr13 44934055 44934155 -74810743 - MER91C DNA MER1_type 0 140 32 1455 178 0 4 chr13 44934588 44934846 -74810052 - AluJo SINE Alu -55 257 1 1214 166 51 75 chr13 44935319 44935614 -74809284 + AluJb SINE Alu 1 288 -24 908 205 67 5 chr13 44935938 44936133 -74808765 - MER58A DNA MER1_type -5 219 13 1667 196 88 37 chr13 44936797 44937174 -74807724 + MLT2B1 LTR ERVL 125 520 0 342 318 121 14 chr13 44937177 44937400 -74807498 - MIR SINE MIR -6 256 10 252 304 103 73 chr13 44937507 44937780 -74807118 - L2 LINE L2 0 3272 2992 411 21 0 0 chr13 44937880 44937928 -74806970 + (TA)n Simple_repeat Simple_repeat 2 49 0 2023 217 58 76 chr13 44937978 44938679 -74806219 - MER20B DNA MER1_type -92 691 3 654 118 62 19 chr13 44938721 44938882 -74806016 - Charlie5 DNA MER1_type -54 2558 2391 1795 151 7 7 chr13 44938898 44939176 -74805722 - AluJo SINE Alu -34 278 1 273 273 0 80 chr13 44940056 44940144 -74804754 + MIR SINE MIR 18 98 -110 242 206 0 0 chr13 44940247 44940310 -74804588 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 321 286 0 0 chr13 44941491 44941638 -74803260 + (CA)n Simple_repeat Simple_repeat 2 148 0 603 169 308 17 chr13 44941641 44941823 -74803075 + L1MD3 LINE L1 6137 7986 -9 381 58 0 0 chr13 44942571 44942623 -74802275 + (GA)n Simple_repeat Simple_repeat 1 52 0 391 200 42 0 chr13 44943401 44943496 -74801402 - L2 LINE L2 -1897 1417 1319 1114 199 100 64 chr13 44944578 44944939 -74799959 - MLT1A2 LTR MaLR 0 374 1 489 336 16 20 chr13 44946657 44946910 -74797988 + HAL1b LINE L1 369 620 -728 2080 123 7 13 chr13 44947273 44947575 -74797323 + AluSq SINE Alu 1 300 -13 2548 155 7 12 chr13 44947622 44948034 -74796864 + MSTA LTR MaLR 19 428 0 2227 125 0 3 chr13 44948399 44948712 -74796186 - AluSx SINE Alu 0 312 1 1341 175 133 51 chr13 44948822 44949250 -74795648 + MER31B LTR ERV1 4 466 0 1663 253 52 55 chr13 44949329 44949969 -74794929 + L1MC5 LINE L1 6696 7333 -628 325 258 152 13 chr13 44950229 44950380 -74794518 + MIR SINE MIR 78 249 -13 1144 251 156 26 chr13 44950494 44950957 -74793941 + LTR67 LTR ERVL 1 523 -34 426 304 214 23 chr13 44950996 44951253 -74793645 - MLT1J2 LTR MaLR -2 448 143 1903 221 37 69 chr13 44951587 44952043 -74792855 - MER92B LTR ERV1 0 636 202 1935 199 15 35 chr13 44952043 44952445 -74792453 + MSTD LTR MaLR 3 396 0 1903 221 37 69 chr13 44952445 44952580 -74792318 - MER92B LTR ERV1 -434 202 64 985 203 0 0 chr13 44953867 44954030 -74790868 - FRAM SINE Alu -3 163 1 27 62 0 0 chr13 44954792 44954840 -74790058 + AT_rich Low_complexity Low_complexity 1 48 0 1838 207 33 5 chr13 44955272 44955363 -74789535 + MER93a LTR ERV1 1 88 -314 2295 108 7 3 chr13 44955363 44955670 -74789228 - AluSq SINE Alu -5 308 1 1838 207 33 5 chr13 44955670 44955969 -74788929 + MER93a LTR ERV1 88 402 0 243 330 48 10 chr13 44956572 44956675 -74788223 - MIR SINE MIR -55 153 47 404 65 52 0 chr13 44956822 44956899 -74787999 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2213 147 18 23 chr13 44957338 44957727 -74787171 - MLT1B LTR MaLR 0 390 4 396 327 132 63 chr13 45009731 45010162 -74734736 + L2 LINE L2 2804 3264 -8 490 304 52 26 chr13 45010241 45010471 -74734427 + MIR SINE MIR 21 256 -6 209 300 0 0 chr13 45011313 45011363 -74733535 + MER5B DNA MER1_type 85 134 -44 2220 228 87 13 chr13 45012295 45012918 -74731980 + L1MD2 LINE L1 5691 6359 0 366 262 90 8 chr13 45012979 45013101 -74731797 + L1MC4a LINE L1 590 721 -5398 * 4187 13 0 0 chr13 45013094 45013566 -74731332 - L1PA3 LINE L1 -285 5870 5399 2452 31 0 7 chr13 45013566 45013896 -74731002 + L1PA3 LINE L1 5865 6155 0 21 0 0 0 chr13 45014060 45014081 -74730817 + AT_rich Low_complexity Low_complexity 1 21 0 425 261 76 0 chr13 45014148 45014305 -74730593 + L1MC4a LINE L1 958 1126 -4993 230 163 0 0 chr13 45014350 45014399 -74730499 + L1MC4a LINE L1 2261 2309 -3820 949 136 130 6 chr13 45014426 45014595 -74730303 - MER46A DNA MER2_type 0 236 47 241 226 16 32 chr13 45014635 45014697 -74730201 + MER46A DNA MER2_type 82 142 -94 * 296 80 300 0 chr13 45014649 45014699 -74730199 - MER46A DNA MER2_type -171 65 1 353 249 98 70 chr13 45014733 45015102 -74729796 + L1MC4a LINE L1 2409 2787 -3342 346 321 36 27 chr13 45015104 45015216 -74729682 + L1MC4a LINE L1 3959 4071 -2058 2664 39 0 3 chr13 45015240 45015552 -74729346 - AluY SINE Alu 0 311 1 349 288 85 9 chr13 45015796 45016008 -74728890 + L1MC4a LINE L1 5660 5887 -1904 227 202 81 10 chr13 45016324 45016423 -74728475 + L1MEd LINE L1 4579 4684 -1445 626 218 0 49 chr13 45018137 45018279 -74726619 + FLAM_A SINE Alu 1 135 -7 214 279 16 0 chr13 45018322 45018383 -74726515 - MIR3 SINE MIR -34 174 113 2168 109 0 0 chr13 45020072 45020382 -74724516 - AluY SINE Alu 0 310 1 1208 163 0 32 chr13 45021904 45022125 -74722773 - MER20 DNA MER1_type -4 215 2 1692 162 18 4 chr13 45022649 45022921 -74721977 - AluJo SINE Alu -30 282 7 376 261 0 0 chr13 45024071 45024159 -74720739 - L2 LINE L2 -1 3312 3225 395 265 51 0 chr13 45024191 45024289 -74720609 - MIR SINE MIR 0 262 160 1361 215 215 34 chr13 45024295 45024326 -74720572 + MLT2B3 LTR ERVL 1 25 -529 813 78 93 16 chr13 45024326 45024455 -74720443 - MER85 DNA T2_type 0 139 1 1361 215 215 34 chr13 45024455 45024892 -74720006 + MLT2B3 LTR ERVL 25 554 0 266 326 226 14 chr13 45025161 45025464 -74719434 - L2 LINE L2 -233 3080 2719 2198 141 82 15 chr13 45025812 45026217 -74718681 + Tigger2a DNA MER2_type 3 434 0 890 134 56 0 chr13 45027548 45027694 -74717204 + MSTB LTR MaLR 273 375 0 1922 179 104 43 chr13 45028259 45028729 -74716169 + Tigger7 DNA MER2_type 28 526 -1961 564 165 0 0 chr13 45028723 45028808 -74716090 + Tigger7 DNA MER2_type 2496 2580 -7 * 21 0 0 0 chr13 45028853 45028874 -74716024 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr13 45029704 45029730 -74715168 + (CA)n Simple_repeat Simple_repeat 2 27 0 2526 164 31 9 chr13 45030027 45030189 -74714709 - Tigger1 DNA MER2_type 0 2418 2261 2289 93 0 13 chr13 45030189 45030490 -74714408 + AluY SINE Alu 1 297 -14 2526 164 31 9 chr13 45030490 45030784 -74714114 - Tigger1 DNA MER2_type -157 2261 1952 1306 206 18 25 chr13 45030784 45031060 -74713838 + AluJb SINE Alu 1 274 -38 275 159 175 0 chr13 45031061 45031124 -74713774 + AluS SINE Alu 221 294 -6 11577 131 26 27 chr13 45031146 45033083 -74711815 - Tigger1 DNA MER2_type -454 1964 30 31 0 0 0 chr13 45033294 45033325 -74711573 + AT_rich Low_complexity Low_complexity 1 31 0 4997 149 21 26 chr13 45033741 45034758 -74710140 + L1MB2 LINE L1 5163 6169 -2 308 209 15 0 chr13 45035493 45035560 -74709338 - L1ME4a LINE L1 -72 6049 5982 1444 202 19 6 chr13 45035603 45035920 -74708978 + L1 LINE L1 4922 5242 -904 189 0 0 0 chr13 45035966 45035987 -74708911 + (TG)n Simple_repeat Simple_repeat 2 22 0 1974 110 0 18 chr13 45036101 45036374 -74708524 + AluSx SINE Alu 24 291 -21 278 255 142 0 chr13 45036578 45036684 -74708214 - L1M4 LINE L1 -1045 5101 4981 312 361 57 5 chr13 45036765 45036959 -74707939 - HAL1b LINE L1 -784 564 361 1595 174 4 0 chr13 45037309 45037568 -74707330 - AluJb SINE Alu -6 306 47 2053 104 35 10 chr13 45037637 45037926 -74706972 + AluSg SINE Alu 1 296 -14 1352 92 34 84 chr13 45037936 45038175 -74706723 + LTR8 LTR ERV1 361 587 -104 234 0 0 0 chr13 45038180 45038206 -74706692 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 700 292 70 59 chr13 45038960 45039402 -74705496 + MLT1J2 LTR MaLR 1 401 -8 213 274 53 88 chr13 45040737 45040850 -74704048 - L2 LINE L2 -20 3293 3185 186 393 56 0 chr13 45041081 45041188 -74703710 - L2 LINE L2 -520 2794 2682 24 0 0 0 chr13 45041464 45041488 -74703410 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 27 chr13 45042421 45042440 -74702458 + AT_rich Low_complexity Low_complexity 1 20 -16 1328 195 57 30 chr13 45042440 45042738 -74702160 + AluJo SINE Alu 2 307 -5 26 0 0 27 chr13 45042738 45042755 -74702143 + AT_rich Low_complexity Low_complexity 20 36 0 275 307 145 17 chr13 45042943 45043122 -74701776 + MIR SINE MIR 20 221 -41 2274 98 0 0 chr13 45044959 45045266 -74699632 + AluSc SINE Alu 1 307 -2 344 290 13 113 chr13 45045831 45045997 -74698901 + L1ME LINE L1 5483 5619 -502 1468 69 0 86 chr13 45045997 45046229 -74698669 - L1PA8 LINE L1 -6 6166 5955 344 290 13 113 chr13 45046229 45046300 -74698598 + L1ME LINE L1 5619 5696 -425 292 330 55 32 chr13 45046677 45046989 -74697909 - L1MC/D LINE L1 -1952 5856 5538 279 272 134 40 chr13 45046998 45047200 -74697698 - L1MC/D LINE L1 -678 5486 5266 229 373 44 32 chr13 45047507 45047665 -74697233 - L2 LINE L2 -468 2846 2687 1936 255 65 47 chr13 45047665 45048571 -74696327 + L1ME3A LINE L1 5203 6162 -8 195 311 97 80 chr13 45048580 45048879 -74696019 - L2 LINE L2 -613 2701 2398 1483 206 109 38 chr13 45049053 45049530 -74695368 + Charlie1b DNA MER1_type 2 512 -11 451 349 176 14 chr13 45049830 45050494 -74694404 - L2 LINE L2 -1156 2158 1387 24 0 0 0 chr13 45050773 45050797 -74694101 + AT_rich Low_complexity Low_complexity 1 24 0 223 247 71 59 chr13 45050911 45050996 -74693902 + L3 LINE CR1 1373 1458 -119 698 247 60 22 chr13 45051051 45051233 -74693665 - MER58A DNA MER1_type -35 189 1 1057 168 6 11 chr13 45051516 45051695 -74693203 - AluJo SINE Alu -119 193 16 515 212 10 0 chr13 45051695 45051794 -74693104 + AluJb SINE Alu 194 293 -19 23 0 0 0 chr13 45054134 45054157 -74690741 + AT_rich Low_complexity Low_complexity 1 23 0 737 244 140 25 chr13 45054643 45054922 -74689976 - MER46C DNA MER2_type -5 333 23 272 258 89 8 chr13 45054973 45055097 -74689801 + MER20B DNA MER1_type 649 782 -1 605 319 22 86 chr13 45055121 45055434 -74689464 - L3 LINE CR1 -22 1555 1263 339 305 103 35 chr13 45055435 45055609 -74689289 - L3 LINE CR1 -420 1157 972 300 254 0 28 chr13 45055987 45056058 -74688840 - MLT1L LTR MaLR -415 200 132 479 288 89 22 chr13 45056278 45056602 -74688296 - L1MEd LINE L1 -861 2144 1838 535 245 37 43 chr13 45056615 45056838 -74688060 - L1MEd LINE L1 -4893 1741 1519 196 366 37 0 chr13 45056843 45056925 -74687973 - L3 LINE CR1 -683 894 810 248 92 15 46 chr13 45057234 45057299 -74687599 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 1665 156 11 22 chr13 45057300 45057576 -74687322 - AluJo SINE Alu -28 284 12 236 246 51 42 chr13 45058451 45058569 -74686329 + L1 LINE L1 2647 2765 -3381 700 250 143 73 chr13 45058746 45059078 -74685820 + L1MC4a LINE L1 2956 3346 -2800 1903 149 7 3 chr13 45059078 45059380 -74685518 - AluJb SINE Alu -7 305 3 700 250 143 73 chr13 45059380 45059622 -74685276 + L1MC4a LINE L1 3346 3570 -2576 9131 202 40 67 chr13 45059648 45061402 -74683496 + L1MC1 LINE L1 2100 3899 -2714 2755 7 0 0 chr13 45061402 45061705 -74683193 - AluY SINE Alu -8 303 1 9131 202 40 67 chr13 45061705 45064031 -74680867 + L1MC1 LINE L1 3899 6056 -557 846 237 15 5 chr13 45064046 45064244 -74680654 + L1MC1 LINE L1 6413 6612 -1 1609 245 102 54 chr13 45064298 45065033 -74679865 + L1MC4a LINE L1 5260 6029 -1779 359 310 166 20 chr13 45065394 45065791 -74679107 + L1MC5 LINE L1 6411 6797 -1011 2878 211 110 31 chr13 45065792 45066740 -74678158 + L1ME1 LINE L1 5133 6178 0 1286 145 70 4 chr13 45066811 45067039 -74677859 + L1MC3 LINE L1 6520 6762 -1023 670 175 306 30 chr13 45067085 45067353 -74677545 + MLT1G3 LTR MaLR 156 497 -33 220 284 148 87 chr13 45067668 45067897 -74677001 - MIR SINE MIR -14 248 6 764 264 0 0 chr13 45067979 45068146 -74676752 + AluJb SINE Alu 137 303 -9 2048 129 34 0 chr13 45068701 45068996 -74675902 - AluSx SINE Alu -7 305 1 231 135 0 95 chr13 45069032 45069068 -74675830 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 -39 737 149 37 0 chr13 45069068 45069202 -74675696 + L1MB4 LINE L1 6042 6180 0 231 135 0 95 chr13 45069202 45069239 -74675659 + (CAAAAA)n Simple_repeat Simple_repeat 31 70 0 1043 175 53 19 chr13 45069671 45069934 -74674964 - MER33 DNA MER1_type 0 324 53 202 211 0 0 chr13 45069956 45069994 -74674904 + MER5B DNA MER1_type 1 38 -140 2009 119 0 4 chr13 45070728 45071006 -74673892 + AluSg SINE Alu 11 287 -23 1121 206 188 37 chr13 45071573 45071951 -74672947 - MER63B DNA MER1_type -1 435 1 303 261 35 63 chr13 45071967 45072098 -74672800 - MER5A DNA MER1_type -29 149 37 3843 188 62 19 chr13 45072350 45073551 -74671347 + L1MB8 LINE L1 4920 6155 -23 24 32 0 0 chr13 45074825 45074856 -74670042 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 45076148 45076169 -74668729 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 45078099 45078119 -74666779 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 45078281 45078305 -74666593 + AT_rich Low_complexity Low_complexity 1 24 0 1002 81 0 0 chr13 45078353 45078477 -74666421 + AluY SINE Alu 1 124 -187 1284 106 0 0 chr13 45078577 45078756 -74666142 + AluY SINE Alu 119 297 -14 2612 32 0 13 chr13 45080369 45080678 -74664220 + AluY SINE Alu 2 306 -5 2334 53 0 72 chr13 45080921 45081241 -74663657 + AluSc SINE Alu 1 297 -12 522 309 98 20 chr13 45085965 45086363 -74658535 - L1ME LINE L1 -373 5748 5320 22 0 0 0 chr13 45086684 45086706 -74658192 + AT_rich Low_complexity Low_complexity 1 22 0 2027 132 0 0 chr13 45086835 45087123 -74657775 - AluSx SINE Alu -24 288 1 353 212 0 0 chr13 45087454 45087520 -74657378 - MER91 DNA MER1_type -74 66 1 33 25 0 0 chr13 45088139 45088179 -74656719 + AT_rich Low_complexity Low_complexity 1 40 0 230 242 105 32 chr13 45090722 45090817 -74654081 + MLT1J LTR MaLR 386 487 -24 328 324 38 0 chr13 45091254 45091359 -74653539 - MIR SINE MIR -6 256 148 704 273 53 24 chr13 45091435 45091644 -74653254 + MIR SINE MIR 39 253 -9 396 0 0 0 chr13 45091650 45091694 -74653204 + (CAT)n Simple_repeat Simple_repeat 2 45 0 1295 171 18 73 chr13 45092170 45092253 -74652645 - MER33 DNA MER1_type -2261 324 238 2010 125 4 0 chr13 45092253 45092532 -74652366 + AluSx SINE Alu 1 280 -32 1295 171 18 73 chr13 45092532 45092788 -74652110 - MER33 DNA MER1_type -2347 238 4 469 282 92 11 chr13 45092839 45093013 -74651885 + MIR3 SINE MIR 16 203 -5 1031 191 52 36 chr13 45093035 45093287 -74651611 + L1MB4 LINE L1 5925 6180 0 1705 175 61 29 chr13 45093441 45093819 -74651079 + MLT1B LTR MaLR 1 390 0 21 36 0 0 chr13 45094098 45094126 -74650772 + AT_rich Low_complexity Low_complexity 1 28 0 270 283 9 88 chr13 45094346 45094459 -74650439 + MIR SINE MIR 35 138 -124 261 295 171 39 chr13 45094730 45094859 -74650039 - L2 LINE L2 0 3313 3168 3380 144 5 7 chr13 45095256 45095824 -74649074 - L1PA16 LINE L1 -26 6140 5574 38 51 0 0 chr13 45095914 45095973 -74648925 + AT_rich Low_complexity Low_complexity 1 59 0 1992 124 17 10 chr13 45096052 45096342 -74648556 + AluSx SINE Alu 1 292 -20 2593 42 0 3 chr13 45097417 45097723 -74647175 + AluY SINE Alu 1 305 -6 180 317 0 0 chr13 45098010 45098051 -74646847 - L2 LINE L2 -18 3254 3214 1411 202 66 63 chr13 45098390 45098635 -74646263 + L1MC5 LINE L1 7353 7596 -365 2224 103 0 7 chr13 45098635 45098937 -74645961 + AluSg SINE Alu 1 300 -10 1411 202 66 63 chr13 45098937 45099250 -74645648 + L1MC5 LINE L1 7596 7913 -48 22 35 0 0 chr13 45099252 45099281 -74645617 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 45099740 45099769 -74645129 + AT_rich Low_complexity Low_complexity 1 29 0 219 120 60 20 chr13 45100253 45100303 -74644595 + (TTTAA)n Simple_repeat Simple_repeat 2 53 0 2410 37 3 0 chr13 45100618 45100912 -74643986 - L1PA7 LINE L1 -3 6151 5857 413 254 34 59 chr13 45101276 45101394 -74643504 + MER91A DNA MER1_type 42 156 -40 3157 143 45 22 chr13 45101395 45101997 -74642901 - L1MB7 LINE L1 -9 6175 5560 1692 183 31 28 chr13 45102091 45102451 -74642447 + MER47A DNA MER2_type 6 366 0 207 0 0 0 chr13 45102619 45102642 -74642256 + (CAA)n Simple_repeat Simple_repeat 2 24 0 206 267 67 67 chr13 45102970 45103075 -74641823 - L2 LINE L2 -8 3305 3201 412 378 142 26 chr13 45103503 45104040 -74640858 - L2 LINE L2 -2503 811 213 263 274 29 49 chr13 45104060 45104162 -74640736 - L2 LINE L2 -10 3262 3163 212 274 164 0 chr13 45104600 45104673 -74640225 + L2 LINE L2 3227 3311 -2 281 289 208 13 chr13 45105768 45105917 -74638981 - MER5A DNA MER1_type -5 184 7 2100 146 0 56 chr13 45106765 45107122 -74637776 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr13 45107879 45107900 -74636998 + AT_rich Low_complexity Low_complexity 1 21 0 5224 141 69 23 chr13 45108205 45110231 -74634667 + L1MA4 LINE L1 4125 6255 -45 270 125 0 0 chr13 45110247 45110295 -74634603 + L1MA4 LINE L1 6242 6289 -11 27 0 0 0 chr13 45110327 45110354 -74634544 + AT_rich Low_complexity Low_complexity 1 27 0 710 149 117 0 chr13 45110544 45110698 -74634200 + MLT1B LTR MaLR 39 210 -180 312 120 0 0 chr13 45111601 45111651 -74633247 + (A)n Simple_repeat Simple_repeat 1 50 0 1615 165 16 85 chr13 45112558 45112761 -74632137 + MLT1B LTR MaLR 29 194 -196 2215 138 0 3 chr13 45112761 45113073 -74631825 + AluSx SINE Alu 1 311 -1 1615 165 16 85 chr13 45113073 45113256 -74631642 + MLT1B LTR MaLR 194 388 -2 25 51 0 0 chr13 45113337 45113376 -74631522 + AT_rich Low_complexity Low_complexity 1 39 0 192 125 0 0 chr13 45115022 45115054 -74629844 + (T)n Simple_repeat Simple_repeat 1 32 0 323 299 96 53 chr13 45115304 45115491 -74629407 + MIR SINE MIR 46 240 -22 401 247 171 0 chr13 45115722 45115868 -74629030 - MIR SINE MIR -89 173 3 265 350 50 0 chr13 45116011 45116131 -74628767 - MIR3 SINE MIR -5 203 78 2276 54 7 0 chr13 45116899 45117216 -74627682 - AluY SINE Alu 0 325 7 283 328 152 11 chr13 45117223 45117402 -74627496 - MIR SINE MIR -46 216 19 407 313 92 6 chr13 45117426 45117818 -74627080 + LTR16B LTR ERVL 1 462 -2 7210 165 147 12 chr13 45117850 45119397 -74625501 - MER52A LTR ERV1 0 1755 1 24 0 0 0 chr13 45119531 45119555 -74625343 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr13 45120165 45120190 -74624708 + AT_rich Low_complexity Low_complexity 1 25 0 286 260 39 31 chr13 45120446 45120573 -74624325 - L1ME3A LINE L1 -219 5951 5824 614 282 14 20 chr13 45120590 45121059 -74623839 - L1ME3A LINE L1 -522 5642 5175 235 242 70 47 chr13 45121349 45121477 -74623421 + MLT1J2 LTR MaLR 22 152 -298 1822 152 63 14 chr13 45121646 45121994 -74622904 + MLT1A1 LTR MaLR 1 365 0 478 295 39 60 chr13 45122086 45122432 -74622466 - L1ME3A LINE L1 -1314 4832 4480 2280 106 0 3 chr13 45122432 45122734 -74622164 - AluSg SINE Alu -9 301 1 478 295 39 60 chr13 45122734 45122797 -74622101 - L1ME3A LINE L1 -1666 4480 4417 2332 77 0 7 chr13 45122797 45123096 -74621802 - AluSg SINE Alu -13 297 1 478 295 39 60 chr13 45123096 45123231 -74621667 - L1ME3A LINE L1 -1729 4417 4299 362 21 0 0 chr13 45123320 45123367 -74621531 + MADE1 DNA Mariner 1 47 -33 623 268 98 18 chr13 45123388 45123724 -74621174 - L1ME3A LINE L1 -1948 4198 3836 23 0 0 0 chr13 45124051 45124074 -74620824 + AT_rich Low_complexity Low_complexity 1 23 0 318 187 0 13 chr13 45124250 45124325 -74620573 + L1MEc LINE L1 78 151 -6245 1216 175 34 8 chr13 45124327 45124595 -74620303 + L1MD3 LINE L1 7721 7995 0 2383 81 0 10 chr13 45124957 45125281 -74619617 - AluSx SINE Alu 0 312 5 276 291 34 11 chr13 45125449 45125617 -74619281 + L1P3 LINE L1 5657 5828 -344 999 287 62 19 chr13 45126134 45126458 -74618440 - HERV16 LTR ERVL -3675 1321 984 663 163 16 8 chr13 45126453 45126582 -74618316 - HERV16 LTR ERVL -4135 861 732 * 1378 286 28 24 chr13 45126579 45127651 -74617247 + HERV16 LTR ERVL 1334 2530 -2466 1251 302 14 21 chr13 45127757 45127949 -74616949 + LTR16B LTR ERVL 31 223 -241 2318 115 3 0 chr13 45127949 45128253 -74616645 - AluSq SINE Alu -8 305 1 1251 302 14 21 chr13 45128253 45128497 -74616401 + LTR16B LTR ERVL 223 464 0 2367 90 0 3 chr13 45128568 45128868 -74616030 + AluSx SINE Alu 1 299 -13 1368 327 17 12 chr13 45128904 45129676 -74615222 + HERV16 LTR ERVL 3726 4542 -943 483 331 29 69 chr13 45129957 45130434 -74614464 + HERV16 LTR ERVL 4926 5383 -381 1278 251 25 48 chr13 45130578 45131017 -74613881 + LTR16A LTR ERVL 21 449 -1 217 289 169 0 chr13 45131556 45131639 -74613259 + L3 LINE CR1 1376 1472 -105 292 167 69 28 chr13 45131730 45131802 -74613096 - MIR SINE MIR -39 223 149 2063 154 0 0 chr13 45131815 45132127 -74612771 + AluSx SINE Alu 1 312 0 722 256 124 28 chr13 45133090 45133447 -74611451 + MER57A LTR ERV1 27 403 0 314 328 30 60 chr13 45133779 45133913 -74610985 - MIR3 SINE MIR -64 144 15 585 282 60 9 chr13 45135529 45135745 -74609153 + MIR SINE MIR 21 247 -15 205 298 0 0 chr13 45135861 45135908 -74608990 - MIR3 SINE MIR -1 207 161 482 333 39 35 chr13 45137401 45137656 -74607242 + L3 LINE CR1 530 785 -792 2151 130 0 9 chr13 45137979 45138294 -74606604 - AluSx SINE Alu 0 312 1 936 197 111 57 chr13 45138384 45138755 -74606143 + L1MC4a LINE L1 5912 6302 -1506 341 308 94 39 chr13 45138966 45139555 -74605343 - L1MEd LINE L1 -790 2512 1786 297 71 0 0 chr13 45140186 45140228 -74604670 - L1ME2 LINE L1 -23 6141 6100 252 0 0 0 chr13 45140230 45140258 -74604640 + (TA)n Simple_repeat Simple_repeat 1 28 0 500 206 23 8 chr13 45140258 45140389 -74604509 - L1M4 LINE L1 -797 5349 5217 * 1703 219 63 6 chr13 45140379 45140886 -74604012 - L1M4 LINE L1 -782 5364 4829 546 262 31 4 chr13 45140940 45141165 -74603733 - L1MEd LINE L1 -5219 1722 1492 667 288 81 60 chr13 45141190 45141721 -74603177 - L1MEd LINE L1 -5018 1405 864 1294 183 168 89 chr13 45141844 45142326 -74602572 + MLT2B1 LTR ERVL 1 520 0 385 295 51 6 chr13 45142409 45142565 -74602333 - L1MEd LINE L1 -6242 181 19 2062 109 44 0 chr13 45142586 45142879 -74602019 - AluSp SINE Alu -7 306 1 61 45 0 0 chr13 45143361 45143450 -74601448 + AT_rich Low_complexity Low_complexity 1 89 0 2237 132 96 69 chr13 45143995 45144277 -74600621 + L1MC2 LINE L1 5812 6116 -228 785 181 0 0 chr13 45144277 45144410 -74600488 + FLAM_A SINE Alu 1 133 0 2237 132 96 69 chr13 45144410 45144636 -74600262 + L1MC2 LINE L1 6116 6334 -10 189 107 0 0 chr13 45144807 45144835 -74600063 + (A)n Simple_repeat Simple_repeat 1 28 0 380 290 117 9 chr13 45145592 45145823 -74599075 - LTR33 LTR ERVL -28 493 238 458 185 0 0 chr13 45145827 45145908 -74598990 - AluJo SINE Alu -16 296 216 946 182 19 0 chr13 45145909 45146063 -74598835 - AluJo SINE Alu -155 157 1 243 357 35 39 chr13 45146378 45146633 -74598265 - L2 LINE L2 -705 2609 2356 454 228 44 37 chr13 45146988 45147124 -74597774 - MLT1F LTR MaLR -34 508 372 442 250 96 45 chr13 45147192 45147348 -74597550 - MLT1F LTR MaLR -302 288 125 4992 249 42 35 chr13 45147354 45147651 -74597247 + L1ME1 LINE L1 2590 2883 -3283 932 190 23 0 chr13 45147651 45147872 -74597026 - L1MA5A LINE L1 -4 6293 6068 4992 249 42 35 chr13 45147872 45148569 -74596329 + L1ME1 LINE L1 2883 3574 -2592 2216 105 0 0 chr13 45148569 45148855 -74596043 + AluSx SINE Alu 1 286 -26 884 36 9 0 chr13 45148860 45148972 -74595926 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 4992 249 42 35 chr13 45148972 45149991 -74594907 + L1ME1 LINE L1 3577 4587 -1579 1630 223 19 58 chr13 45149991 45150475 -74594423 + LTR40c LTR ERVL 1 465 0 4992 249 42 35 chr13 45150475 45151941 -74592957 + L1ME1 LINE L1 4587 6144 -22 270 206 0 0 chr13 45151962 45152030 -74592868 + GA-rich Low_complexity Low_complexity 3 70 0 296 199 385 0 chr13 45152110 45152276 -74592622 + MIR SINE MIR 20 249 -13 806 251 6 0 chr13 45153294 45153465 -74591433 + MER5B DNA MER1_type 7 178 0 390 342 39 7 chr13 45153473 45153628 -74591270 + MER5A DNA MER1_type 1 160 -29 261 354 31 0 chr13 45153697 45153793 -74591105 + L2 LINE L2 2890 2988 -284 190 211 79 0 chr13 45153917 45153955 -74590943 + L3 LINE CR1 1429 1469 -108 446 232 312 0 chr13 45154397 45154535 -74590363 - MER5A DNA MER1_type 0 189 9 432 0 0 0 chr13 45155401 45155449 -74589449 + (TG)n Simple_repeat Simple_repeat 1 48 0 268 341 82 22 chr13 45155495 45155677 -74589221 - L3b LINE CR1 -37 1546 1354 474 340 8 16 chr13 45156132 45156382 -74588516 + L1MC4a LINE L1 5685 5932 -1876 4105 143 16 14 chr13 45156920 45157626 -74587272 + MER39 LTR ERV1 1 707 0 333 291 160 19 chr13 45157730 45157936 -74586962 + L2 LINE L2 3079 3313 0 876 111 0 8 chr13 45160076 45160202 -74584696 - FLAM_C SINE Alu -7 136 12 2360 68 0 7 chr13 45160389 45160684 -74584214 + AluSc SINE Alu 1 293 -16 284 289 93 10 chr13 45161309 45161406 -74583492 + MIR SINE MIR 6 110 -152 392 306 31 65 chr13 45161417 45161688 -74583210 + L2 LINE L2 2901 3159 -113 1581 190 146 19 chr13 45161811 45162222 -74582676 + MLT1C LTR MaLR 1 463 -4 731 246 126 0 chr13 45162268 45162451 -74582447 - MER58A DNA MER1_type -12 212 7 4663 140 1 0 chr13 45163317 45164075 -74580823 + L1PA16 LINE L1 5383 6141 -25 250 320 140 0 chr13 45164506 45164606 -74580292 + MIR SINE MIR 71 184 -78 324 109 0 0 chr13 45165366 45165414 -74579484 + L1PA16 LINE L1 5924 5974 -191 1832 145 7 14 chr13 45165414 45165704 -74579194 + AluJo SINE Alu 1 288 -24 235 134 30 45 chr13 45165712 45165779 -74579119 + A-rich Low_complexity Low_complexity 2 67 0 1144 158 0 0 chr13 45165780 45165970 -74578928 + L1PA16 LINE L1 5968 6157 -9 1903 142 0 17 chr13 45166913 45167209 -74577689 + AluJb SINE Alu 20 310 -2 760 146 82 58 chr13 45167820 45167991 -74576907 - FAM SINE Alu 0 175 1 351 0 0 0 chr13 45168147 45168186 -74576712 + (CA)n Simple_repeat Simple_repeat 2 40 0 193 263 125 75 chr13 45168201 45168361 -74576537 + L2 LINE L2 2872 3039 -233 2262 88 3 10 chr13 45169328 45169622 -74575276 + AluSp SINE Alu 1 292 -21 2256 107 3 0 chr13 45170716 45171015 -74573883 - AluSx SINE Alu -9 303 4 4033 257 109 28 chr13 45171943 45173198 -74571700 + L1MEc LINE L1 37 1466 -4930 2331 112 0 0 chr13 45173198 45173503 -74571395 + AluSg SINE Alu 1 305 -5 4033 257 109 28 chr13 45173503 45173945 -74570953 + L1MEc LINE L1 1466 1871 -4525 616 230 7 66 chr13 45173942 45174216 -74570682 + L1MEc LINE L1 2327 2584 -3631 * 202 146 0 24 chr13 45174555 45174596 -74570302 + (TAAAAA)n Simple_repeat Simple_repeat 4 43 0 403 281 92 7 chr13 45175508 45175661 -74569237 - MIR SINE MIR -4 258 93 569 71 12 0 chr13 45175729 45175813 -74569085 + L1PA15 LINE L1 6059 6143 -22 2393 80 0 16 chr13 45175860 45176173 -74568725 + AluY SINE Alu 4 311 0 187 350 36 21 chr13 45177542 45177682 -74567216 - L2 LINE L2 -774 2540 2399 2898 3 0 0 chr13 45177700 45178011 -74566887 + AluYa5 SINE Alu 1 311 0 245 340 135 7 chr13 45178066 45178207 -74566691 - L2 LINE L2 -938 2376 2218 26 0 0 0 chr13 45179554 45179580 -74565318 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr13 45179708 45179747 -74565151 + AT_rich Low_complexity Low_complexity 1 39 0 181 300 0 0 chr13 45182409 45182459 -74562439 - L3b LINE CR1 -314 1269 1220 * 582 237 46 26 chr13 45182457 45182609 -74562289 + MIR SINE MIR 108 262 0 21 0 0 0 chr13 45183297 45183318 -74561580 + AT_rich Low_complexity Low_complexity 1 21 0 231 340 104 0 chr13 45183352 45183458 -74561440 - MIR SINE MIR -110 152 36 357 188 8 117 chr13 45184108 45184236 -74560662 - L1MA9 LINE L1 -40 6272 6159 228 143 0 0 chr13 45184236 45184278 -74560620 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 635 221 39 0 chr13 45184278 45184432 -74560466 - L1MA9 LINE L1 -148 6164 6005 2333 112 0 0 chr13 45185496 45185800 -74559098 + AluSq SINE Alu 6 309 -4 2463 71 3 0 chr13 45188884 45189192 -74555706 - AluY SINE Alu -2 309 1 222 204 31 0 chr13 45189255 45189353 -74555545 + (TA)n Simple_repeat Simple_repeat 2 102 0 309 236 0 38 chr13 45189653 45189759 -74555139 - MER103 DNA DNA -9 157 56 2034 98 74 0 chr13 45189814 45190099 -74554799 - AluSx SINE Alu -6 306 1 1089 262 139 36 chr13 45191939 45192465 -74552433 + MLT1G1 LTR MaLR 16 595 0 38 61 0 0 chr13 45193393 45193459 -74551439 + AT_rich Low_complexity Low_complexity 1 66 0 296 189 14 0 chr13 45193617 45193691 -74551207 + CT-rich Low_complexity Low_complexity 3 77 0 269 369 28 14 chr13 45194114 45194255 -74550643 - MIR3 SINE MIR -63 145 3 201 74 0 0 chr13 45194312 45194339 -74550559 + (CCCCCT)n Simple_repeat Simple_repeat 5 31 0 10677 61 10 11 chr13 45194339 45195725 -74549173 + SVA Other Other 3 1386 0 305 196 0 0 chr13 45196060 45196116 -74548782 - L2 LINE L2 0 3313 3258 337 305 21 43 chr13 45196832 45196973 -74547925 - MIR3 SINE MIR -24 184 47 2064 148 0 3 chr13 45197163 45197468 -74547430 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr13 45198000 45198028 -74546870 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 45200082 45200104 -74544794 + AT_rich Low_complexity Low_complexity 1 22 0 292 273 30 0 chr13 45200232 45200298 -74544600 + MIR SINE MIR 81 148 -60 290 294 297 21 chr13 45200710 45201043 -74543855 - L3b LINE CR1 -50 1533 1109 539 258 45 17 chr13 45201060 45201238 -74543660 - MIR3 SINE MIR -5 203 21 1890 143 40 13 chr13 45201516 45201817 -74543081 - 7SLRNA srpRNA srpRNA -7 313 5 206 206 95 48 chr13 45202076 45202139 -74542759 + L2 LINE L2 3189 3254 -18 476 324 166 8 chr13 45202795 45203036 -74541862 - L2 LINE L2 0 3272 2994 545 184 203 18 chr13 45203169 45203332 -74541566 - MIR SINE MIR 0 262 70 606 316 58 82 chr13 45203653 45203853 -74541045 - L2 LINE L2 -2 3270 3080 1026 161 18 161 chr13 45203853 45204132 -74540766 - MER8 DNA MER2_type 0 239 1 606 316 58 82 chr13 45204132 45204273 -74540625 - L2 LINE L2 -192 3080 2937 2227 127 0 9 chr13 45204274 45204589 -74540309 + AluSx SINE Alu 1 312 0 248 264 28 0 chr13 45204916 45204988 -74539910 - MIR SINE MIR -65 143 70 423 311 11 62 chr13 45205297 45205474 -74539424 + MIR SINE MIR 59 226 -36 242 206 16 0 chr13 45205479 45205542 -74539356 + GA-rich Low_complexity Low_complexity 2 65 0 2074 106 47 13 chr13 45206634 45206935 -74537963 + AluSq SINE Alu 1 311 -2 630 294 23 15 chr13 45207081 45207302 -74537596 + MIR SINE MIR 25 249 -13 254 272 74 0 chr13 45207377 45207515 -74537383 - MIR SINE MIR -62 146 34 1956 112 48 10 chr13 45208107 45208420 -74536478 + L1MA5A LINE L1 5973 6297 0 414 120 0 0 chr13 45208901 45208976 -74535922 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 103 0 0 chr13 45208976 45209005 -74535893 + (GA)n Simple_repeat Simple_repeat 2 30 0 2148 58 4 0 chr13 45209432 45209693 -74535205 + AluY SINE Alu 1 262 -49 672 75 0 0 chr13 45209694 45209797 -74535101 + AluSg/x SINE Alu 204 306 0 204 97 0 0 chr13 45209911 45209942 -74534956 + (CTG)n Simple_repeat Simple_repeat 3 33 0 260 53 26 0 chr13 45209942 45209980 -74534918 + (ATG)n Simple_repeat Simple_repeat 3 41 0 244 305 74 0 chr13 45210223 45210318 -74534580 + MIR SINE MIR 159 260 -2 22 56 0 0 chr13 45211995 45212031 -74532867 + AT_rich Low_complexity Low_complexity 1 36 0 239 140 20 0 chr13 45212043 45212093 -74532805 + CT-rich Low_complexity Low_complexity 2 52 0 211 264 107 39 chr13 45212210 45212392 -74532506 + MIR SINE MIR 34 262 0 277 109 0 0 chr13 45214441 45214487 -74530411 - Alu SINE Alu 0 302 257 226 241 133 0 chr13 45216109 45216192 -74528706 - L2 LINE L2 -62 3251 3158 667 236 67 20 chr13 45216509 45216704 -74528194 - MER97a DNA MER1_type? -677 217 14 192 289 53 40 chr13 45217503 45217579 -74527319 - L2 LINE L2 -60 3212 3136 1040 218 13 18 chr13 45217694 45217923 -74526975 + MIR SINE MIR 8 235 -27 361 250 0 19 chr13 45217938 45218042 -74526856 - MIR SINE MIR -14 248 147 2801 148 27 32 chr13 45218056 45218421 -74526477 - L1MB7 LINE L1 0 6184 5821 1896 164 0 16 chr13 45218421 45218732 -74526166 - AluJo SINE Alu -6 306 1 2801 148 27 32 chr13 45218732 45218893 -74526005 - L1MB7 LINE L1 -363 5821 5661 1437 229 144 58 chr13 45218893 45219706 -74525192 - HAL1 LINE L1 0 2507 1625 1482 286 34 18 chr13 45219708 45220219 -74524679 - HAL1 LINE L1 -918 1589 1067 1341 180 138 48 chr13 45220219 45220552 -74524346 - MLT1A1 LTR MaLR -2 363 1 1482 286 34 18 chr13 45220552 45220592 -74524306 - HAL1 LINE L1 -1440 1067 1029 537 290 16 52 chr13 45220608 45220856 -74524042 - HAL1 LINE L1 -2111 396 158 252 310 218 21 chr13 45220862 45221004 -74523894 + L2 LINE L2 3103 3272 0 225 132 0 0 chr13 45221283 45221321 -74523577 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1698 194 86 56 chr13 45221322 45221785 -74523113 - MLT2B1 LTR ERVL -42 478 2 1953 196 96 10 chr13 45221818 45222236 -74522662 - MLT1C LTR MaLR -2 465 12 309 343 107 38 chr13 45222241 45222606 -74522292 - L2 LINE L2 -571 2743 2354 817 185 23 0 chr13 45223423 45223553 -74521345 - MER45A DNA AcHobo 0 178 46 1239 111 30 30 chr13 45223945 45224143 -74520755 + L1MA7 LINE L1 5430 5627 -685 877 193 20 0 chr13 45224145 45224295 -74520603 + MER45A DNA AcHobo 26 178 0 3462 170 47 2 chr13 45224411 45225034 -74519864 + L1MA7 LINE L1 5641 6291 0 237 269 58 87 chr13 45225043 45225147 -74519751 - L2 LINE L2 -252 3020 2920 217 236 236 0 chr13 45225162 45225234 -74519664 + L2 LINE L2 3149 3237 -35 2239 82 0 0 chr13 45225356 45225669 -74519229 + AluY SINE Alu 1 313 0 2150 142 0 0 chr13 45226396 45226707 -74518191 + AluSx SINE Alu 1 311 -1 194 280 70 40 chr13 45227065 45227165 -74517733 - MIR SINE MIR -48 214 112 2353 151 38 21 chr13 45227694 45228112 -74516786 + MSTB1 LTR MaLR 8 432 0 227 371 109 0 chr13 45228255 45228430 -74516468 - L2 LINE L2 -1031 2283 2090 225 368 0 0 chr13 45228795 45228871 -74516027 - L2 LINE L2 -47 3225 3150 405 214 292 68 chr13 45229560 45229752 -74515146 - MER102b DNA MER1_type -14 327 93 198 103 0 0 chr13 45230315 45230344 -74514554 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4388 250 92 60 chr13 45230344 45231420 -74513478 - L2 LINE L2 -13 3300 2259 2218 131 0 0 chr13 45231420 45231725 -74513173 + AluSx SINE Alu 1 305 -7 4388 250 92 60 chr13 45231725 45231765 -74513133 - L2 LINE L2 -1054 2259 2222 1096 150 0 6 chr13 45231765 45231932 -74512966 + L1PB3 LINE L1 5989 6154 0 4388 250 92 60 chr13 45231932 45232823 -74512075 - L2 LINE L2 -1091 2222 1245 2057 190 39 28 chr13 45232863 45233397 -74511501 - L1MC4a LINE L1 0 7808 7215 2494 63 13 0 chr13 45233404 45233704 -74511194 + AluSx SINE Alu 1 304 -8 422 280 98 0 chr13 45233708 45233840 -74511058 - L2 LINE L2 -2083 1231 1087 570 319 86 9 chr13 45234545 45234777 -74510121 + MIR SINE MIR 6 255 -7 233 278 0 0 chr13 45234818 45234872 -74510026 + MIR3 SINE MIR 106 159 -49 203 267 0 0 chr13 45235355 45235400 -74509498 + L2 LINE L2 2713 2757 -557 410 304 122 45 chr13 45235503 45235905 -74508993 - L1MEd LINE L1 -3380 2749 2317 364 319 131 51 chr13 45235924 45236259 -74508639 - L1MEd LINE L1 -5707 412 51 234 150 0 0 chr13 45236374 45236414 -74508484 + (TA)n Simple_repeat Simple_repeat 1 40 0 750 293 45 12 chr13 45236543 45236785 -74508113 - MIR SINE MIR 0 262 13 1915 146 6 22 chr13 45236885 45237201 -74507697 + AluJo SINE Alu 1 311 -1 293 262 131 16 chr13 45237231 45237353 -74507545 + L1ME LINE L1 5318 5453 -668 * 972 164 97 10 chr13 45237350 45237537 -74507361 + L1 LINE L1 5164 5372 -774 1656 161 14 11 chr13 45237537 45237823 -74507075 + AluJo SINE Alu 1 287 -25 972 164 97 10 chr13 45237823 45237842 -74507056 + L1 LINE L1 5372 5388 -758 699 210 93 14 chr13 45240428 45240642 -74504256 - MIR SINE MIR -9 253 23 22 35 0 0 chr13 45240960 45240989 -74503909 + AT_rich Low_complexity Low_complexity 1 29 0 228 311 0 0 chr13 45241113 45241174 -74503724 + L2 LINE L2 3210 3270 -2 247 159 32 32 chr13 45243922 45243985 -74500913 + (CCCCG)n Simple_repeat Simple_repeat 2 64 0 2883 228 41 2 chr13 45245358 45245971 -74498927 - MER82 DNA MER2_type -13 640 4 339 263 139 52 chr13 45246377 45246571 -74498327 - HAL1b LINE L1 -504 844 634 312 191 0 16 chr13 45246572 45246635 -74498263 - MER20 DNA MER1_type 0 219 158 31902 95 9 25 chr13 45246701 45253002 -74491896 - L1PA8A LINE L1 -1 6445 144 392 290 136 19 chr13 45253083 45253238 -74491660 + L2 LINE L2 3096 3268 -4 1492 160 12 78 chr13 45254056 45254596 -74490302 - L1M1 LINE L1 -743 6105 5637 6035 24 0 0 chr13 45254596 45255294 -74489604 + L1PA3 LINE L1 5455 6152 -3 1492 160 12 78 chr13 45255294 45255421 -74489477 - L1M1 LINE L1 -1211 5637 5503 * 7233 175 24 46 chr13 45255414 45255646 -74489252 - L1M1 LINE L1 -4246 2603 2367 2277 106 0 6 chr13 45255646 45255958 -74488940 + AluSg SINE Alu 1 310 0 7233 175 24 46 chr13 45255958 45257265 -74487633 - L1M1 LINE L1 -4482 2367 1098 190 276 76 67 chr13 45257551 45257656 -74487242 - L2 LINE L2 -1490 1824 1719 1740 181 10 3 chr13 45258047 45258356 -74486542 - AluJo SINE Alu -1 311 1 21 36 0 0 chr13 45259544 45259572 -74485326 + AT_rich Low_complexity Low_complexity 1 28 0 259 269 97 82 chr13 45261359 45261690 -74483208 + L1ME LINE L1 31 366 -5704 565 182 36 0 chr13 45261713 45261823 -74483075 + FLAM_A SINE Alu 1 114 -19 2082 160 71 22 chr13 45261823 45262228 -74482670 - MSTB LTR MaLR 0 426 1 682 169 63 7 chr13 45262229 45262371 -74482527 - MSTB-int LTR MaLR -1 1650 1501 1194 238 33 40 chr13 45262371 45262674 -74482224 - MLT2B3 LTR ERVL 0 554 254 3724 168 21 1 chr13 45262677 45263337 -74481561 - MSTB-int LTR MaLR -977 674 2 1757 213 33 24 chr13 45263338 45263577 -74481321 - MSTB LTR MaLR 0 426 191 2092 136 13 0 chr13 45263577 45263878 -74481020 - AluSx SINE Alu -7 305 1 2522 57 0 0 chr13 45263888 45264187 -74480711 - AluY SINE Alu -12 299 1 1757 213 33 24 chr13 45264187 45264358 -74480540 - MSTB LTR MaLR -243 183 1 186 103 0 0 chr13 45264709 45264738 -74480160 + (GA)n Simple_repeat Simple_repeat 1 29 0 232 206 88 69 chr13 45264778 45264938 -74479960 + L1ME LINE L1 445 607 -4955 24 0 0 0 chr13 45265612 45265636 -74479262 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 45266238 45266258 -74478640 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 569 295 167 9 chr13 45266775 45266985 -74477913 - MIR SINE MIR 0 262 20 253 138 0 108 chr13 45266995 45267060 -74477838 - L1MC4 LINE L1 -1 8041 7924 1100 252 33 34 chr13 45267066 45267448 -74477450 + L1M4c LINE L1 601 954 -5588 505 155 3 8 chr13 45267467 45267566 -74477332 + L1M1 LINE L1 1045 1207 -5175 * 3705 222 35 49 chr13 45267558 45267743 -74477155 + L1M4c LINE L1 951 1137 -5509 437 252 0 0 chr13 45267743 45267846 -74477052 - U13 snRNA snRNA -1 103 1 3705 222 35 49 chr13 45267846 45269216 -74475682 + L1M4c LINE L1 1137 2574 -4072 1509 201 21 12 chr13 45269230 45269564 -74475334 + L1MC2 LINE L1 5928 6264 -80 1476 246 18 6 chr13 45269567 45270059 -74474839 + L1M4c LINE L1 3534 4031 -2613 14742 181 11 2 chr13 45270071 45270486 -74474412 + L1PA13 LINE L1 2332 2742 -3421 2362 116 37 6 chr13 45270486 45270839 -74474059 - THE1B LTR MaLR 0 364 1 14742 181 11 2 chr13 45270839 45271750 -74473148 + L1PA13 LINE L1 2742 3643 -2520 210 71 0 0 chr13 45271750 45271778 -74473120 + (CAA)n Simple_repeat Simple_repeat 3 30 0 14742 181 11 2 chr13 45271778 45272193 -74472705 + L1PA13 LINE L1 3643 4053 -2110 2500 62 7 3 chr13 45272193 45272499 -74472399 - AluY SINE Alu -4 307 1 14742 181 11 2 chr13 45272499 45274558 -74470340 + L1PA13 LINE L1 4053 6162 -1 2828 250 77 11 chr13 45274562 45275745 -74469153 + L1M4 LINE L1 1374 2640 -3742 676 95 0 0 chr13 45275754 45275849 -74469049 - AluS SINE Alu -218 95 1 1787 244 43 82 chr13 45275963 45276560 -74468338 + L1MEc LINE L1 1618 2237 -3978 1449 210 14 14 chr13 45276560 45276850 -74468048 + AluJo SINE Alu 1 290 -22 1787 244 43 82 chr13 45276850 45277771 -74467127 + L1MEc LINE L1 2237 3022 -3193 22 56 0 0 chr13 45277871 45277907 -74466991 + AT_rich Low_complexity Low_complexity 1 36 0 2413 110 100 3 chr13 45277996 45278386 -74466512 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr13 45278741 45278763 -74466135 + AT_rich Low_complexity Low_complexity 1 22 0 3986 223 42 44 chr13 45279998 45281629 -74463269 + L1MEc LINE L1 1881 3488 -2727 420 212 10 0 chr13 45281660 45281759 -74463139 + L1M4 LINE L1 4873 4972 -1410 517 337 6 12 chr13 45282876 45283042 -74461856 + MIR3 SINE MIR 20 184 -24 24 53 0 0 chr13 45283364 45283402 -74461496 + AT_rich Low_complexity Low_complexity 1 38 0 1020 222 14 9 chr13 45283548 45283764 -74461134 - L1MC3 LINE L1 -977 6808 6592 195 100 0 0 chr13 45283806 45283836 -74461062 + (TA)n Simple_repeat Simple_repeat 1 30 0 716 335 84 16 chr13 45284920 45285287 -74459611 - L2 LINE L2 -461 2853 2462 449 342 149 32 chr13 45285337 45285871 -74459027 - L2 LINE L2 0 3313 2720 636 304 190 21 chr13 45286061 45286534 -74458364 - L2 LINE L2 -1235 2079 1527 220 217 0 0 chr13 45286619 45286665 -74458233 - L2 LINE L2 0 3313 3268 392 213 37 37 chr13 45286943 45287051 -74457847 + L1ME LINE L1 5672 5779 -385 2364 170 8 31 chr13 45287053 45287535 -74457363 + L1MB4 LINE L1 5710 6180 0 962 171 136 11 chr13 45287542 45287718 -74457180 + AluJb SINE Alu 87 284 -28 189 0 0 0 chr13 45287718 45287739 -74457159 + (TA)n Simple_repeat Simple_repeat 1 21 0 1054 229 84 46 chr13 45287786 45288131 -74456767 - L1ME2 LINE L1 -1 6163 5806 712 305 5 10 chr13 45288148 45288345 -74456553 + MLT1E2-int LTR MaLR 692 887 -484 1524 229 17 67 chr13 45288531 45288937 -74455961 + MLT1E2-int LTR MaLR 971 1356 -15 1971 213 107 38 chr13 45288943 45289525 -74455373 + MLT1E2 LTR MaLR 1 622 -4 537 273 98 19 chr13 45289525 45289730 -74455168 - L2 LINE L2 -78 3235 3015 195 244 137 61 chr13 45290107 45290197 -74454701 + MIR3 SINE MIR 5 109 -99 2325 93 0 7 chr13 45290197 45290499 -74454399 - AluSg SINE Alu -10 300 1 195 244 137 61 chr13 45290499 45290539 -74454359 + MIR3 SINE MIR 109 145 -63 777 133 0 0 chr13 45290668 45290788 -74454110 + AluSc SINE Alu 190 309 0 2015 77 0 11 chr13 45290829 45291101 -74453797 - AluY SINE Alu -2 309 41 21 0 0 0 chr13 45291453 45291474 -74453424 + AT_rich Low_complexity Low_complexity 1 21 0 229 356 130 9 chr13 45291905 45292020 -74452878 - L2 LINE L2 -7 3265 3137 180 97 0 0 chr13 45292164 45292195 -74452703 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2362 70 3 10 chr13 45293769 45294071 -74450827 + AluSg SINE Alu 1 300 -10 521 341 118 24 chr13 45295678 45296120 -74448778 - L2 LINE L2 -5 3267 2781 1676 180 151 29 chr13 45296461 45296877 -74448021 + MLT1C LTR MaLR 1 467 0 505 307 103 65 chr13 45297624 45298237 -74446661 - L1M4 LINE L1 -1351 4795 4160 1638 141 8 12 chr13 45298416 45298671 -74446227 - AluJo SINE Alu -10 302 49 533 320 98 46 chr13 45299172 45299664 -74445234 - HAL1b LINE L1 -803 1704 1239 189 94 0 0 chr13 45299664 45299696 -74445202 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 533 320 98 46 chr13 45299696 45299737 -74445161 - HAL1b LINE L1 -1268 1239 42 2113 118 0 10 chr13 45300118 45300415 -74444483 + AluSx SINE Alu 1 294 -18 1968 141 53 6 chr13 45300610 45300951 -74443947 - MLT1A1 LTR MaLR -8 357 1 301 291 30 22 chr13 45302818 45302952 -74441946 + L1M4 LINE L1 3396 3530 -2616 342 338 110 18 chr13 45303163 45303382 -74441516 + L1MC4a LINE L1 974 1212 -5318 351 251 242 43 chr13 45303397 45303724 -74441174 + L1MC4a LINE L1 1277 1668 -4862 360 258 108 52 chr13 45303862 45304056 -74440842 + L1MC4a LINE L1 1893 2097 -4443 1222 292 32 40 chr13 45304187 45305008 -74439890 + L1MC4a LINE L1 4809 5622 -918 321 90 8 90 chr13 45305031 45305164 -74439734 + (TA)n Simple_repeat Simple_repeat 2 123 0 848 159 15 0 chr13 45305164 45305296 -74439602 - Tigger7 DNA MER2_type -1 2486 2353 300 291 14 35 chr13 45306131 45306250 -74438648 - L1ME4a LINE L1 -3 6118 6001 855 237 101 9 chr13 45306250 45306469 -74438429 - MER8 DNA MER2_type 0 239 1 300 291 14 35 chr13 45306469 45306490 -74438408 - L1ME4a LINE L1 -120 6001 5981 1249 164 187 0 chr13 45307135 45307166 -74437732 - Tigger7 DNA MER2_type -127 2360 2336 229 19 19 74 chr13 45307166 45307220 -74437678 + (TAA)n Simple_repeat Simple_repeat 1 51 0 1249 164 187 0 chr13 45307220 45307523 -74437375 - Tigger7 DNA MER2_type -151 2336 1 496 299 146 26 chr13 45307533 45308076 -74436822 + L1MC4a LINE L1 5677 5831 -714 220 328 32 24 chr13 45308377 45308502 -74436396 - L2 LINE L2 -213 3059 2934 2230 104 3 0 chr13 45308567 45308865 -74436033 + AluY SINE Alu 3 301 -10 2200 117 3 0 chr13 45308875 45309174 -74435724 + AluSx SINE Alu 1 300 -12 5352 143 65 5 chr13 45309962 45311171 -74433727 - L1MA5 LINE L1 0 6300 5024 300 296 10 9 chr13 45311199 45311370 -74433528 - L1MC/D LINE L1 -701 5463 5292 247 253 49 31 chr13 45311452 45311614 -74433284 - L1ME4a LINE L1 -2 6119 5955 498 103 0 0 chr13 45312062 45312140 -74432758 + (TA)n Simple_repeat Simple_repeat 1 78 0 1093 180 129 69 chr13 45313758 45314259 -74430639 - LTR36 LTR ERV1 -5 606 1 326 80 13 40 chr13 45314735 45314810 -74430088 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 660 336 20 16 chr13 45314856 45315100 -74429798 - MLT1K LTR MaLR -238 350 106 315 278 100 96 chr13 45315309 45315579 -74429319 + L1MC4a LINE L1 5634 5904 -1904 680 262 119 7 chr13 45315727 45316013 -74428885 - L1MC4a LINE L1 -1894 5914 5597 610 306 13 0 chr13 45316262 45316419 -74428479 + MER5A DNA MER1_type 31 189 0 1993 125 4 0 chr13 45316576 45316886 -74428012 - AluJo SINE Alu 0 311 1 228 186 0 0 chr13 45316886 45316929 -74427969 + L1M4 LINE L1 3819 3861 -2285 247 294 17 25 chr13 45317064 45317183 -74427715 + CT-rich Low_complexity Low_complexity 1 118 0 21 57 0 0 chr13 45317742 45317777 -74427121 + AT_rich Low_complexity Low_complexity 1 35 0 363 23 0 0 chr13 45318041 45318085 -74426813 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 336 292 64 40 chr13 45318479 45318681 -74426217 - L1MC4a LINE L1 -1302 4844 4638 3937 73 4 37 chr13 45319240 45319776 -74425122 + SVA Other Other 866 1383 -3 1812 147 33 10 chr13 45319827 45320126 -74424772 + AluJb SINE Alu 2 307 -5 2355 94 3 28 chr13 45320631 45320951 -74423947 + AluSx SINE Alu 1 312 0 1291 164 14 0 chr13 45321115 45321335 -74423563 + AluJb SINE Alu 87 309 -3 219 204 0 0 chr13 45321562 45321616 -74423282 + T-rich Low_complexity Low_complexity 1 54 0 1279 49 6 0 chr13 45321619 45321782 -74423116 - L1PA4 LINE L1 -3 6152 5989 277 269 0 0 chr13 45322316 45322383 -74422515 - L2 LINE L2 -8 3264 3198 288 322 71 71 chr13 45322394 45322689 -74422209 - L2 LINE L2 -349 2965 2671 446 336 0 8 chr13 45323285 45323413 -74421485 - L2 LINE L2 0 3313 3187 232 267 0 17 chr13 45323475 45323535 -74421363 + L2 LINE L2 3214 3272 0 1017 274 68 57 chr13 45323924 45324398 -74420500 + MLT1J LTR MaLR 32 510 -1 273 274 14 0 chr13 45324866 45324939 -74419959 - MER117 DNA MER1_type -57 140 67 192 125 0 0 chr13 45325183 45325215 -74419683 + (TG)n Simple_repeat Simple_repeat 1 32 0 246 62 0 0 chr13 45325219 45325251 -74419647 + (TA)n Simple_repeat Simple_repeat 2 33 0 1895 154 6 16 chr13 45327551 45327862 -74417036 + AluJo SINE Alu 1 308 -4 1921 119 48 0 chr13 45329185 45329554 -74415344 + AluSx SINE Alu 1 382 0 23 33 0 0 chr13 45329883 45329913 -74414985 + AT_rich Low_complexity Low_complexity 1 30 0 330 261 23 0 chr13 45329957 45330045 -74414853 - MIR SINE MIR -73 189 100 2263 82 24 0 chr13 45330056 45330347 -74414551 + AluSq SINE Alu 1 298 -15 1378 167 21 41 chr13 45331649 45332110 -74412788 - MLT1D LTR MaLR -8 497 1 239 316 43 34 chr13 45332154 45332271 -74412627 - MIR SINE MIR -123 139 22 461 339 11 17 chr13 45332409 45332586 -74412312 + MIR3 SINE MIR 31 206 -2 292 270 27 0 chr13 45332615 45332689 -74412209 + MER5C DNA MER1_type 1 76 -248 728 283 22 96 chr13 45333120 45333234 -74411664 + MLT1I LTR MaLR 64 185 -224 2058 106 0 0 chr13 45333234 45333520 -74411378 + AluSx SINE Alu 17 302 0 728 283 22 96 chr13 45333520 45333768 -74411130 + MLT1I LTR MaLR 185 400 -9 1886 118 0 0 chr13 45333768 45334040 -74410858 - L1P4 LINE L1 -488 5673 5402 186 43 0 0 chr13 45334224 45334247 -74410651 + (CA)n Simple_repeat Simple_repeat 2 24 0 418 291 42 91 chr13 45334294 45334509 -74410389 + L2 LINE L2 2483 2684 -630 2314 89 0 43 chr13 45334509 45334834 -74410064 + AluY SINE Alu 1 311 0 418 291 42 91 chr13 45334834 45334883 -74410015 + L2 LINE L2 2684 2734 -580 14423 177 23 23 chr13 45334883 45335933 -74408965 + L1MA5A LINE L1 2661 3710 -3289 2045 145 3 0 chr13 45335933 45336229 -74408669 + AluSx SINE Alu 1 297 -15 14423 177 23 23 chr13 45336229 45337025 -74407873 + L1MA5A LINE L1 3710 4505 -2494 1876 138 0 27 chr13 45337025 45337322 -74407576 - AluSx SINE Alu -19 293 5 14423 177 23 23 chr13 45337322 45339808 -74405090 + L1MA5A LINE L1 4505 6998 -1 523 306 74 93 chr13 45339911 45340073 -74404825 + L2 LINE L2 2809 2973 -299 1265 210 34 27 chr13 45340073 45340368 -74404530 - AluJb SINE Alu -5 297 1 523 306 74 93 chr13 45340368 45340429 -74404469 + L2 LINE L2 2973 3034 -238 5091 90 18 26 chr13 45340429 45341209 -74403689 + L1MA2 LINE L1 5524 6297 -7 523 306 74 93 chr13 45341209 45341455 -74403443 + L2 LINE L2 3034 3270 -2 994 191 0 0 chr13 45341507 45341675 -74403223 - AluJo SINE Alu -24 288 121 2381 91 0 19 chr13 45341681 45341999 -74402899 - AluSq SINE Alu -1 312 1 331 269 13 0 chr13 45342073 45342151 -74402747 - L2 LINE L2 0 3313 3235 242 180 82 16 chr13 45342407 45342468 -74402430 - MLT1K LTR MaLR -12 576 512 394 324 9 0 chr13 45343307 45343412 -74401486 - L2 LINE L2 -2 3311 3206 2282 153 21 19 chr13 45343753 45344132 -74400766 + MSTB LTR MaLR 47 426 0 33 43 0 0 chr13 45344146 45344193 -74400705 + AT_rich Low_complexity Low_complexity 1 47 0 2147 129 0 0 chr13 45344286 45344588 -74400310 + AluSq SINE Alu 5 306 -7 2289 307 103 10 chr13 45344633 45345918 -74398980 - HAL1 LINE L1 -56 2451 1048 2582 205 12 2 chr13 45345939 45346525 -74398373 + L1 LINE L1 3178 3769 -2377 778 205 46 46 chr13 45346574 45346753 -74398145 - L1MD1 LINE L1 -8 6234 6053 1760 153 117 3 chr13 45346753 45347061 -74397837 - MER61A LTR ERV1 0 343 1 778 205 46 46 chr13 45347061 45347120 -74397778 - L1MD1 LINE L1 -188 6054 5996 621 296 127 59 chr13 45347122 45347642 -74397256 - HAL1 LINE L1 -1527 980 414 1453 130 18 102 chr13 45347642 45347774 -74397124 + AluSq SINE Alu 1 98 -215 2275 113 3 0 chr13 45347774 45348083 -74396815 + AluSx SINE Alu 1 310 -2 1453 130 18 102 chr13 45348083 45348235 -74396663 + AluSq SINE Alu 98 261 -52 621 296 127 59 chr13 45348235 45348306 -74396592 - HAL1 LINE L1 -2093 414 349 26 0 0 0 chr13 45348616 45348642 -74396256 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 45349376 45349398 -74395500 + AT_rich Low_complexity Low_complexity 1 22 0 1219 289 60 8 chr13 45349606 45350121 -74394777 + L1ME2 LINE L1 5399 5940 -230 233 189 11 84 chr13 45350344 45350534 -74394364 + (TTAA)n Simple_repeat Simple_repeat 4 179 0 337 345 28 0 chr13 45350582 45350724 -74394174 - L2 LINE L2 -341 2972 2827 404 289 25 46 chr13 45350793 45351032 -74393866 - L2 LINE L2 -2388 926 693 1527 170 98 48 chr13 45351574 45351910 -74392988 - MLT1A1 LTR MaLR 0 365 13 397 248 30 38 chr13 45351932 45352065 -74392833 - MIR SINE MIR -118 144 13 1327 240 92 33 chr13 45352513 45352971 -74391927 + L1MC4 LINE L1 7434 7918 -124 6304 134 23 23 chr13 45353011 45354738 -74390160 + L1MA5A LINE L1 4559 6296 -1 502 166 29 9 chr13 45355169 45355278 -74389620 + L1MC4 LINE L1 7671 8042 0 532 226 12 11 chr13 45355295 45355330 -74389568 + GA-rich Low_complexity Low_complexity 1 34 -551 2325 65 3 37 chr13 45355330 45355651 -74389247 + AluY SINE Alu 1 310 -1 532 226 12 11 chr13 45355651 45355880 -74389018 + GA-rich Low_complexity Low_complexity 34 585 0 198 143 0 0 chr13 45356654 45356689 -74388209 + (CA)n Simple_repeat Simple_repeat 1 35 0 194 289 19 0 chr13 45356894 45356946 -74387952 + L3 LINE CR1 1521 1573 -4 337 302 0 9 chr13 45357110 45357216 -74387682 - MIR SINE MIR -1 261 157 2157 103 7 20 chr13 45357233 45357533 -74387365 - AluSx SINE Alu -16 296 1 2371 92 7 0 chr13 45357716 45358022 -74386876 + AluSx SINE Alu 2 309 -3 469 228 26 9 chr13 45358027 45358141 -74386757 + L1ME2 LINE L1 6040 6155 -9 1233 177 357 0 chr13 45358287 45358682 -74386216 - L1ME2 LINE L1 -194 5970 5435 2201 110 0 3 chr13 45359023 45359322 -74385576 - AluSx SINE Alu -14 298 1 2490 157 44 0 chr13 45360478 45360885 -74384013 + MSTB LTR MaLR 2 426 0 451 258 61 0 chr13 45361063 45361195 -74383703 + MIR SINE MIR 66 205 -57 1495 213 14 70 chr13 45361779 45362193 -74382705 + MLT2C1 LTR ERVL 3 393 -4 874 101 122 0 chr13 45362469 45362617 -74382281 + LTR47A LTR ERVL 279 444 -8 258 269 132 12 chr13 45362828 45362995 -74381903 + L1MC/D LINE L1 5292 5478 -2330 281 151 38 0 chr13 45363003 45363056 -74381842 + L1MA10 LINE L1 6278 6332 -2 316 338 25 0 chr13 45363079 45363236 -74381662 + L1MC/D LINE L1 5493 5653 -468 236 236 0 0 chr13 45363271 45363315 -74381583 + GA-rich Low_complexity Low_complexity 4 50 -8 2111 143 3 10 chr13 45363315 45363629 -74381269 + AluSx SINE Alu 1 312 0 265 266 85 77 chr13 45363642 45363890 -74381008 + L1MC/D LINE L1 5648 5897 -224 198 200 22 0 chr13 45364457 45364502 -74380396 - L2 LINE L2 0 3272 3227 1520 271 50 30 chr13 45364835 45365334 -74379564 + MER21B LTR ERV1 317 825 -38 414 284 8 8 chr13 45366114 45366241 -74378657 - LTR67 LTR ERVL -3 554 428 274 346 31 16 chr13 45366310 45366437 -74378461 - LTR67 LTR ERVL -316 241 113 2359 86 3 3 chr13 45367389 45367690 -74377208 + AluSc SINE Alu 1 301 -8 528 221 29 125 chr13 45367788 45367996 -74376902 + HAL1 LINE L1 3 190 -2317 228 67 0 0 chr13 45368004 45368034 -74376864 + (T)n Simple_repeat Simple_repeat 1 30 0 956 18 0 0 chr13 45368035 45368144 -74376754 - L1PA2 LINE L1 -1 6154 6046 310 217 60 0 chr13 45369156 45369239 -74375659 - MER53 DNA DNA -96 93 6 324 303 56 14 chr13 45369489 45369631 -74375267 - MIR SINE MIR -52 210 63 325 319 113 16 chr13 45369958 45370143 -74374755 - MIR SINE MIR -33 229 27 1631 125 6 119 chr13 45370312 45370639 -74374259 - AluJo SINE Alu -8 294 5 1039 235 77 9 chr13 45370659 45370785 -74374113 - L2 LINE L2 -561 2753 2637 308 222 12 25 chr13 45370785 45370866 -74374032 - MER116 DNA Mariner 0 80 1 1039 235 77 9 chr13 45370866 45371079 -74373819 - L2 LINE L2 -677 2637 2391 290 231 179 85 chr13 45371130 45371342 -74373556 - L2 LINE L2 -1057 2257 2026 30 0 0 0 chr13 45371803 45371833 -74373065 + AT_rich Low_complexity Low_complexity 1 30 0 306 310 134 9 chr13 45371882 45372098 -74372800 - L2 LINE L2 -1367 1947 1705 1743 153 26 129 chr13 45372192 45372403 -74372495 + MLT1A2 LTR MaLR 1 149 -225 1818 123 14 61 chr13 45372403 45372696 -74372202 - AluSc SINE Alu -30 279 1 1743 153 26 129 chr13 45372696 45372901 -74371997 + MLT1A2 LTR MaLR 149 374 0 336 260 48 31 chr13 45372957 45373116 -74371782 - MLT1I LTR MaLR 0 409 293 825 263 124 4 chr13 45373367 45373626 -74371272 - MER115 DNA AcHobo -3 690 401 2012 94 42 14 chr13 45374016 45374304 -74370594 + AluSg SINE Alu 1 296 -14 1466 215 55 48 chr13 45374782 45374818 -74370080 - MLT1C LTR MaLR -26 441 407 2239 119 0 0 chr13 45374818 45375129 -74369769 + AluSx SINE Alu 1 311 -1 1466 215 55 48 chr13 45375129 45375530 -74369368 - MLT1C LTR MaLR -60 407 1 229 267 105 0 chr13 45375530 45375616 -74369282 - MIR SINE MIR -100 162 68 199 268 149 60 chr13 45375658 45375784 -74369114 - MIR SINE MIR -22 240 94 2462 126 38 14 chr13 45375784 45376206 -74368692 - MSTB1 LTR MaLR 0 432 1 199 268 149 60 chr13 45376206 45376247 -74368651 - MIR SINE MIR -168 94 58 427 291 35 14 chr13 45377024 45377165 -74367733 + MIR SINE MIR 23 166 -96 811 293 86 40 chr13 45378963 45379393 -74365505 + LTR16A LTR ERVL 1 450 0 685 193 8 0 chr13 45379541 45379660 -74365238 - MER58B DNA MER1_type -1 340 221 394 281 55 29 chr13 45380436 45380664 -74364234 + MIR SINE MIR 3 239 -23 21 57 0 0 chr13 45380934 45380969 -74363929 + AT_rich Low_complexity Low_complexity 1 35 0 785 136 8 0 chr13 45382226 45382344 -74362554 - L1PA16 LINE L1 -9 6157 6039 1972 136 0 3 chr13 45382389 45382676 -74362222 + AluSx SINE Alu 25 310 -2 2650 133 29 25 chr13 45382806 45382951 -74361947 + L1MB3 LINE L1 5687 5830 -353 2500 62 0 7 chr13 45382951 45383255 -74361643 + AluY SINE Alu 1 302 -9 2650 133 29 25 chr13 45383255 45383597 -74361301 + L1MB3 LINE L1 5830 6176 -7 2541 110 3 30 chr13 45383690 45383848 -74361050 + THE1B LTR MaLR 3 164 -200 2420 91 0 0 chr13 45383848 45384145 -74360753 - AluSc SINE Alu -12 297 1 2541 110 3 30 chr13 45384145 45384358 -74360540 + THE1B LTR MaLR 164 364 0 664 240 39 13 chr13 45384776 45384922 -74359976 - MER69A DNA AcHobo -2352 174 22 2266 108 0 23 chr13 45384922 45385227 -74359671 - AluSx SINE Alu -14 298 1 390 259 136 68 chr13 45386082 45386224 -74358674 + L1ME4a LINE L1 5270 5401 -720 1638 166 25 21 chr13 45386224 45386508 -74358390 + AluJo SINE Alu 1 285 -27 390 259 136 68 chr13 45386508 45386886 -74358012 + L1ME4a LINE L1 5401 5817 -304 261 284 94 16 chr13 45386918 45387045 -74357853 + L1ME4a LINE L1 5889 6025 -96 2449 75 3 0 chr13 45387072 45387367 -74357531 - AluSx SINE Alu -12 300 5 366 165 63 13 chr13 45387443 45387522 -74357376 + MLT1I LTR MaLR 319 401 -8 301 190 30 20 chr13 45387705 45387805 -74357093 - L1MC5 LINE L1 -525 7436 7336 2361 94 3 0 chr13 45388144 45388443 -74356455 - AluSx SINE Alu -8 304 5 2230 110 3 13 chr13 45388841 45389151 -74355747 + AluSp SINE Alu 1 307 -6 425 318 57 5 chr13 45389186 45389378 -74355520 - MIR SINE MIR -15 247 46 740 250 0 0 chr13 45389541 45389693 -74355205 + MER82 DNA MER2_type 2 153 -500 738 178 259 0 chr13 45389828 45390002 -74354896 + MER20 DNA MER1_type 1 219 0 1087 173 61 0 chr13 45390076 45390273 -74354625 + MER3 DNA MER1_type 1 209 0 233 268 0 0 chr13 45390273 45390344 -74354554 + L1MC4 LINE L1 7604 7674 -368 1296 156 125 8 chr13 45390506 45390762 -74354136 + L1MD3 LINE L1 7700 7985 -10 2195 116 0 10 chr13 45391613 45391916 -74352982 - AluSx SINE Alu -12 300 1 833 239 36 140 chr13 45392017 45392544 -74352354 - L2 LINE L2 0 3313 2842 1599 138 21 96 chr13 45393013 45393347 -74351551 - AluJo SINE Alu -3 309 1 505 118 0 0 chr13 45393380 45393456 -74351442 + AluJ/FLAM SINE Alu 2 77 -235 2447 58 31 0 chr13 45394073 45394365 -74350533 + AluY SINE Alu 1 301 -10 2330 117 0 3 chr13 45394635 45394943 -74349955 - AluSx SINE Alu -5 307 1 1857 133 3 36 chr13 45395567 45395876 -74349022 - AluSx SINE Alu -13 299 1 917 102 0 0 chr13 45396009 45396127 -74348771 + AluJb SINE Alu 1 118 -194 24 32 0 0 chr13 45396148 45396179 -74348719 + AT_rich Low_complexity Low_complexity 1 31 0 660 126 0 2 chr13 45397119 45397381 -74347517 + AluSx SINE Alu 1 313 0 297 314 8 40 chr13 45397890 45397954 -74346944 + MIR SINE MIR 137 197 -65 2288 88 7 13 chr13 45397954 45398261 -74346637 + AluSx SINE Alu 1 305 -7 297 314 8 40 chr13 45398261 45398320 -74346578 + MIR SINE MIR 197 256 -6 279 326 59 8 chr13 45398808 45398948 -74345950 + MIR SINE MIR 14 146 -62 2221 108 0 35 chr13 45398955 45399269 -74345629 + AluSq SINE Alu 1 303 -10 249 67 0 0 chr13 45400382 45400412 -74344486 + Alu SINE Alu 18 47 -128 1743 165 0 26 chr13 45400549 45400852 -74344046 + AluJb SINE Alu 2 296 -16 324 239 18 0 chr13 45400874 45400983 -74343915 + (TAA)n Simple_repeat Simple_repeat 1 111 0 2150 118 0 10 chr13 45401091 45401388 -74343510 + AluSg SINE Alu 1 294 -16 187 279 114 0 chr13 45401440 45401519 -74343379 + MIR SINE MIR 77 164 -98 457 196 61 68 chr13 45401534 45401697 -74343201 + MER112 DNA MER1_type 18 179 -81 2331 111 0 0 chr13 45402002 45402308 -74342590 + AluSx SINE Alu 1 306 -6 211 286 0 18 chr13 45403556 45403612 -74341286 - L2 LINE L2 -7 3306 3252 1404 202 20 0 chr13 45404613 45404866 -74340032 + Tigger7 DNA MER2_type 6 263 -2224 583 177 0 0 chr13 45404870 45404966 -74339932 + Tigger7 DNA MER2_type 2390 2485 -2 468 254 79 0 chr13 45405490 45405616 -74339282 - MER117 DNA MER1_type -52 145 10 1587 185 13 23 chr13 45406197 45406499 -74338399 - AluJo SINE Alu -13 299 1 593 230 0 2 chr13 45406899 45407086 -74337812 - MER58B DNA MER1_type -4 337 4 24 0 0 0 chr13 45409872 45409896 -74335002 + AT_rich Low_complexity Low_complexity 1 24 0 2326 107 0 0 chr13 45409946 45410255 -74334643 - AluSx SINE Alu -3 309 1 788 293 166 43 chr13 45410735 45411095 -74333803 + L2 LINE L2 2193 2507 -806 2019 107 4 0 chr13 45411095 45411358 -74333540 - AluSg SINE Alu -46 264 1 788 293 166 43 chr13 45411358 45411386 -74333512 + L2 LINE L2 2507 2530 -783 1535 54 5 0 chr13 45411386 45411572 -74333326 - U2 snRNA snRNA -1 187 1 788 293 166 43 chr13 45411572 45412185 -74332713 + L2 LINE L2 2530 3308 -5 2305 94 7 0 chr13 45412232 45412530 -74332368 + AluSx SINE Alu 1 300 -12 2616 133 21 25 chr13 45412805 45413240 -74331658 + Tigger2a DNA MER2_type 1 433 -1 347 269 34 7 chr13 45413241 45413390 -74331508 + (TA)n Simple_repeat Simple_repeat 2 154 0 341 238 127 75 chr13 45413668 45414029 -74330869 - L1ME4a LINE L1 -89 6032 5653 2136 125 7 0 chr13 45414239 45414544 -74330354 - AluSx SINE Alu -5 307 1 339 274 25 89 chr13 45415072 45415229 -74329669 - L2 LINE L2 -2 3311 3165 331 270 110 57 chr13 45415888 45416063 -74328835 + L2 LINE L2 3020 3215 -98 2097 102 54 3 chr13 45416063 45416357 -74328541 - AluSq SINE Alu -4 309 1 331 270 110 57 chr13 45416357 45416444 -74328454 + L2 LINE L2 3215 3296 -17 187 299 13 39 chr13 45417383 45417460 -74327438 - MIR SINE MIR -106 102 28 250 279 59 0 chr13 45417762 45417830 -74327068 - Charlie7 DNA MER1_type -2538 74 3 2719 192 39 29 chr13 45417993 45418553 -74326345 + L1MB8 LINE L1 5542 6095 -83 2108 71 4 11 chr13 45418553 45418821 -74326077 - AluSp SINE Alu -5 308 43 1550 188 15 0 chr13 45418821 45419082 -74325816 - AluJb SINE Alu -47 265 1 2719 192 39 29 chr13 45419082 45419136 -74325762 + L1MB8 LINE L1 6094 6163 -15 2209 95 7 14 chr13 45419522 45419816 -74325082 - AluSq SINE Alu -21 292 1 390 226 165 12 chr13 45419992 45420156 -74324742 + L1MC5 LINE L1 7737 7925 -36 184 259 17 17 chr13 45420445 45420503 -74324395 - MIR SINE MIR -4 258 201 214 143 24 24 chr13 45422046 45422088 -74322810 + MIR SINE MIR 72 113 -149 206 300 27 64 chr13 45423202 45423312 -74321586 - MIR SINE MIR -73 135 30 2116 93 40 13 chr13 45424907 45425208 -74319690 + AluSx SINE Alu 1 309 -3 394 162 10 10 chr13 45425211 45425310 -74319588 + GA-rich Low_complexity Low_complexity 2 100 0 722 75 5 101 chr13 45425320 45425519 -74319379 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 207 139 0 0 chr13 45425530 45425566 -74319332 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 441 332 86 17 chr13 45426076 45426308 -74318590 - MIR SINE MIR -8 254 7 1427 179 33 0 chr13 45427447 45427720 -74317178 + L1MB4 LINE L1 5892 6173 -7 238 115 39 0 chr13 45427738 45427790 -74317108 + (TA)n Simple_repeat Simple_repeat 1 54 0 2305 118 0 6 chr13 45427905 45428219 -74316679 - AluSx SINE Alu 0 312 1 1902 152 3 16 chr13 45428219 45428528 -74316370 - AluJb SINE Alu -7 305 1 2150 128 3 0 chr13 45428550 45428854 -74316044 + AluSx SINE Alu 2 306 -6 4904 110 49 15 chr13 45429036 45429789 -74315109 + MER4E LTR ERV1 1 779 0 477 110 0 0 chr13 45429821 45429894 -74315004 + (GA)n Simple_repeat Simple_repeat 2 74 0 1980 37 0 8 chr13 45431800 45432042 -74312856 - L1PA8 LINE L1 -243 5929 5690 1763 77 0 46 chr13 45432044 45432186 -74312712 + L1PA8 LINE L1 5925 6052 -120 2284 96 0 0 chr13 45432186 45432497 -74312401 + AluSg1 SINE Alu 1 311 0 1763 77 0 46 chr13 45432497 45432612 -74312286 + L1PA8 LINE L1 6052 6171 -1 1305 114 0 0 chr13 45432661 45432836 -74312062 + AluSq SINE Alu 131 305 -8 424 224 47 47 chr13 45433034 45433141 -74311757 + MLT1D LTR MaLR 1 107 -398 1025 135 0 0 chr13 45433148 45433289 -74311609 + AluJb SINE Alu 1 141 -171 47 19 0 0 chr13 45433304 45433358 -74311540 + AT_rich Low_complexity Low_complexity 1 54 0 1627 185 46 80 chr13 45433359 45433723 -74311175 + MLT1D LTR MaLR 117 439 -66 2208 119 3 0 chr13 45433723 45434025 -74310873 - AluSx SINE Alu -9 303 1 1627 185 46 80 chr13 45434025 45434088 -74310810 + MLT1D LTR MaLR 439 503 -2 189 173 19 39 chr13 45434216 45434268 -74310630 + L2 LINE L2 3263 3313 0 1611 140 186 69 chr13 45434385 45434793 -74310105 + MLT2B1 LTR ERVL 2 457 -63 2220 112 3 0 chr13 45434804 45435109 -74309789 + AluSx SINE Alu 4 309 -3 230 203 127 0 chr13 45435144 45435223 -74309675 - L1MC4 LINE L1 -1337 6705 6617 296 200 13 0 chr13 45435236 45435311 -74309587 + (TA)n Simple_repeat Simple_repeat 1 76 0 301 56 0 0 chr13 45435346 45435382 -74309516 + MLT2B1 LTR ERVL 477 512 -8 1950 138 9 52 chr13 45435541 45435866 -74309032 - AluSx SINE Alu 0 312 2 1786 142 35 35 chr13 45435898 45436018 -74308880 + AluJo SINE Alu 1 120 -192 231 36 0 0 chr13 45436018 45436046 -74308852 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1786 142 35 35 chr13 45436046 45436236 -74308662 + AluJo SINE Alu 119 311 -1 201 74 0 0 chr13 45436258 45436285 -74308613 + (TTG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 45436285 45436308 -74308590 + AT_rich Low_complexity Low_complexity 1 23 0 2144 117 0 3 chr13 45437052 45437343 -74307555 - AluSx SINE Alu -22 290 1 769 185 0 0 chr13 45437424 45437559 -74307339 + FLAM_C SINE Alu 7 141 -2 2183 99 0 0 chr13 45437820 45438092 -74306806 - AluSg SINE Alu -38 272 1 196 304 51 13 chr13 45438255 45438334 -74306564 - L2 LINE L2 -518 2796 2715 341 305 199 0 chr13 45438390 45438541 -74306357 - MER5A DNA MER1_type 0 189 9 2131 116 24 3 chr13 45438845 45439138 -74305760 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr13 45439291 45439312 -74305586 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr13 45439420 45439444 -74305454 + (CA)n Simple_repeat Simple_repeat 2 25 0 293 219 0 61 chr13 45439456 45439513 -74305385 + MIR SINE MIR 185 237 -25 3048 126 108 24 chr13 45439513 45440062 -74304836 + LTR49 LTR ERV1 1 595 0 293 219 0 61 chr13 45440062 45440086 -74304812 + MIR SINE MIR 237 261 -1 1725 190 0 13 chr13 45440108 45440418 -74304480 + AluJo SINE Alu 3 308 -4 272 294 54 11 chr13 45440443 45440535 -74304363 + MIR SINE MIR 151 246 -16 308 179 9 38 chr13 45440571 45440677 -74304221 + GA-rich Low_complexity Low_complexity 2 104 0 240 162 0 0 chr13 45440740 45440777 -74304121 + MER63 DNA MER1_type 1 37 -173 217 284 0 102 chr13 45440791 45440918 -74303980 - L2 LINE L2 -3194 120 7 267 83 0 21 chr13 45440963 45441011 -74303887 + L1MB4 LINE L1 6130 6176 -4 2157 107 37 0 chr13 45441786 45442085 -74302813 - AluSx SINE Alu -2 310 1 206 281 0 16 chr13 45442282 45442346 -74302552 + L2 LINE L2 3250 3312 -1 407 160 25 25 chr13 45442929 45443048 -74301850 + GA-rich Low_complexity Low_complexity 3 121 0 565 163 0 0 chr13 45443457 45443543 -74301355 + AluJ/FRAM SINE Alu 219 304 -8 1290 198 145 26 chr13 45443688 45444094 -74300804 + MER66B LTR ERV1 97 486 0 1039 241 36 53 chr13 45444505 45444625 -74300273 + L1ME1 LINE L1 4787 4907 -1239 2432 63 23 0 chr13 45444625 45444927 -74299971 + AluY SINE Alu 1 309 -2 1039 241 36 53 chr13 45444927 45445163 -74299735 + L1ME1 LINE L1 4907 5137 -1009 12494 113 7 38 chr13 45445272 45447679 -74297219 - L1P3 LINE L1 -4071 2390 1 910 268 90 34 chr13 45447730 45448235 -74296663 + L1ME1 LINE L1 5633 6163 -3 580 175 29 0 chr13 45448579 45448682 -74296216 + U6 snRNA snRNA 2 107 0 21319 172 10 10 chr13 45448682 45453106 -74291792 + L1PA11 LINE L1 1261 5688 -486 2405 84 0 0 chr13 45453106 45453414 -74291484 - AluY SINE Alu -3 308 1 21319 172 10 10 chr13 45453414 45453902 -74290996 + L1PA11 LINE L1 5688 6174 0 214 211 66 13 chr13 45453906 45453982 -74290916 + (TTAAA)n Simple_repeat Simple_repeat 4 83 0 1587 112 0 0 chr13 45453982 45454223 -74290675 + L1MA3 LINE L1 6064 6304 -1 22 35 0 0 chr13 45455786 45455815 -74289083 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 45455923 45455944 -74288954 + AT_rich Low_complexity Low_complexity 1 21 0 321 399 45 30 chr13 45456563 45456831 -74288067 + L2 LINE L2 2997 3268 -4 390 359 24 14 chr13 45457328 45457537 -74287361 + MLT1I LTR MaLR 196 406 -3 258 164 284 0 chr13 45458186 45458253 -74286645 + MLT1H LTR MaLR 421 506 -43 1207 201 106 19 chr13 45458266 45458625 -74286273 - MLT1B LTR MaLR 0 390 1 2320 100 7 0 chr13 45458748 45459057 -74285841 + AluSx SINE Alu 2 312 0 301 169 156 0 chr13 45459228 45459305 -74285593 - L1MA9 LINE L1 -7 6305 6217 502 228 48 68 chr13 45459356 45459562 -74285336 + LTR52 LTR ERVL 15 216 -205 5084 278 79 65 chr13 45459674 45461854 -74283044 + LTR52-int LTR ERVL 1 2220 -1336 234 0 0 0 chr13 45461854 45461880 -74283018 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5084 278 79 65 chr13 45461880 45462108 -74282790 + LTR52-int LTR ERVL 2220 2443 -1113 406 365 35 10 chr13 45462120 45462323 -74282575 + LTR52-int LTR ERVL 2806 3013 -543 532 304 96 29 chr13 45462324 45462736 -74282162 - L1MEc LINE L1 -3651 2564 2158 339 263 59 17 chr13 45463218 45463336 -74281562 - HAL1 LINE L1 -866 1641 1519 208 382 32 0 chr13 45464125 45464248 -74280650 + L2 LINE L2 2911 3037 -276 283 149 60 45 chr13 45464399 45464466 -74280432 - L1MC1 LINE L1 -1 6332 6265 2152 191 76 56 chr13 45464470 45464822 -74280076 + MER44D DNA MER2_type 1 344 -2143 1860 127 46 62 chr13 45464822 45465149 -74279749 + THE1B LTR MaLR 1 323 -41 2234 99 3 0 chr13 45465149 45465451 -74279447 - AluSq SINE Alu -10 303 1 1860 127 46 62 chr13 45465451 45465493 -74279405 + THE1B LTR MaLR 323 364 0 2152 191 76 56 chr13 45465493 45465587 -74279311 + MER44D DNA MER2_type 344 435 -2052 2349 142 37 28 chr13 45465587 45466016 -74278882 + Tigger2a DNA MER2_type 1 433 -1 2152 191 76 56 chr13 45466016 45466107 -74278791 + MER44D DNA MER2_type 435 605 0 2525 217 42 20 chr13 45466109 45467290 -74277608 - L1MC1 LINE L1 -73 6260 4810 21 0 0 0 chr13 45468788 45468809 -74276089 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr13 45469179 45469213 -74275685 + AT_rich Low_complexity Low_complexity 1 34 0 281 219 14 0 chr13 45470046 45470119 -74274779 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 571 253 29 6 chr13 45470452 45470626 -74274272 - MER5B DNA MER1_type 0 178 1 402 328 8 0 chr13 45472310 45472429 -74272469 - L2 LINE L2 0 3272 3153 25 0 0 0 chr13 45472835 45472860 -74272038 + AT_rich Low_complexity Low_complexity 1 25 0 230 253 184 0 chr13 45472915 45473002 -74271896 + Charlie8 DNA MER1_type 2315 2417 0 1985 321 132 39 chr13 45473413 45474835 -74270063 + L2 LINE L2 492 2045 -1269 393 354 19 19 chr13 45476439 45476648 -74268250 + L2 LINE L2 2038 2246 -1068 244 269 234 0 chr13 45477180 45477325 -74267573 + MIR SINE MIR 83 261 -1 282 329 13 20 chr13 45478318 45478467 -74266431 - LTR28 LTR ERV1 0 1755 1608 * 907 204 185 158 chr13 45478452 45479275 -74265623 - LTR28 LTR ERV1 -261 1494 280 22 0 0 0 chr13 45479847 45479869 -74265029 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 45481210 45481252 -74263646 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 45481699 45481720 -74263178 + AT_rich Low_complexity Low_complexity 1 21 0 373 296 56 5 chr13 45482119 45482315 -74262583 + L1M4 LINE L1 4645 4850 -1296 219 103 0 0 chr13 45482318 45482357 -74262541 + (TC)n Simple_repeat Simple_repeat 2 40 0 330 26 0 0 chr13 45482517 45482556 -74262342 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr13 45484185 45484213 -74260685 + AT_rich Low_complexity Low_complexity 1 28 0 182 146 0 104 chr13 45484535 45484583 -74260315 + L2 LINE L2 3270 3312 -1 408 20 0 0 chr13 45485957 45486006 -74258892 + (CA)n Simple_repeat Simple_repeat 2 50 0 248 77 26 0 chr13 45486298 45486337 -74258561 + (TC)n Simple_repeat Simple_repeat 1 40 0 207 186 0 0 chr13 45486336 45486379 -74258519 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 312 315 45 0 chr13 45486397 45486486 -74258412 - L2 LINE L2 -16 3297 3205 298 296 61 9 chr13 45487306 45487421 -74257477 + MIR SINE MIR 66 186 -76 15237 139 26 53 chr13 45488011 45490819 -74254079 - Tigger4(Zombi) DNA MER2_type 0 2731 2 214 337 42 0 chr13 45491259 45491354 -74253544 + MIR SINE MIR 91 189 -73 351 65 0 0 chr13 45492074 45492120 -74252778 + (CA)n Simple_repeat Simple_repeat 2 47 0 280 279 29 10 chr13 45492328 45492432 -74252466 - L1MC/D LINE L1 -2024 5784 5679 424 284 132 104 chr13 45492466 45492861 -74252037 + LTR67 LTR ERVL 20 425 -132 342 339 22 46 chr13 45492935 45493196 -74251702 - L1MC/D LINE L1 -716 5448 5194 2420 59 3 0 chr13 45493696 45493999 -74250899 - AluY SINE Alu -7 304 1 454 236 75 46 chr13 45494271 45494445 -74250453 - LTR41 LTR ERVL -592 181 3 208 348 77 13 chr13 45494455 45494610 -74250288 - L2 LINE L2 -39 3274 3110 194 326 148 30 chr13 45494888 45495023 -74249875 - L2 LINE L2 -1339 1975 1825 253 176 54 40 chr13 45495073 45495147 -74249751 + Charlie8 DNA MER1_type 79 153 -2264 7338 32 17 0 chr13 45495237 45496121 -74248777 - L1PA5 LINE L1 -1 6153 5255 10207 40 9 0 chr13 45495251 45497173 -74247725 - L1PA5 LINE L1 -15 6139 4196 194 100 67 17 chr13 45497979 45498039 -74246859 + T-rich Low_complexity Low_complexity 6 68 0 2046 161 3 0 chr13 45498057 45498368 -74246530 - AluJb SINE Alu 0 312 1 296 243 39 48 chr13 45498464 45498567 -74246331 - MIR SINE MIR -119 143 42 264 77 51 0 chr13 45498584 45498623 -74246275 - MADE1 DNA Mariner -39 41 1 2305 145 58 24 chr13 45498938 45499352 -74245546 + MSTA LTR MaLR 1 428 0 203 198 185 0 chr13 45499516 45499597 -74245301 - MIR SINE MIR -69 193 98 240 263 51 15 chr13 45501038 45501175 -74243723 - Charlie7 DNA MER1_type -33 2579 2438 226 300 30 40 chr13 45501161 45501261 -74243637 - Charlie7 DNA MER1_type -2507 105 7 * 4820 186 12 17 chr13 45501859 45503261 -74241637 - L1MB8 LINE L1 -6 6172 4779 4033 35 2 15 chr13 45504344 45504806 -74240092 - SVA Other Other 0 1386 931 372 22 0 0 chr13 45506909 45506954 -74237944 + (CA)n Simple_repeat Simple_repeat 2 46 0 248 77 26 0 chr13 45507246 45507285 -74237613 + (TC)n Simple_repeat Simple_repeat 1 40 0 207 186 0 0 chr13 45507284 45507327 -74237571 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 308 315 45 0 chr13 45507345 45507434 -74237464 - L2 LINE L2 -16 3297 3205 265 296 61 9 chr13 45508254 45508369 -74236529 + MIR SINE MIR 66 186 -76 15614 138 26 53 chr13 45508963 45511766 -74233132 - Tigger4(Zombi) DNA MER2_type -4 2727 2 190 337 42 0 chr13 45512206 45512301 -74232597 + MIR SINE MIR 91 189 -73 204 125 0 0 chr13 45513020 45513052 -74231846 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 284 27 16 chr13 45513229 45513364 -74231534 - L1ME LINE L1 -308 5813 5679 422 277 136 102 chr13 45513382 45513793 -74231105 + LTR67 LTR ERVL 1 425 -132 328 339 22 46 chr13 45513867 45514128 -74230770 - L1ME LINE L1 -714 5448 5194 2487 56 3 0 chr13 45514628 45514931 -74229967 - AluY SINE Alu -7 304 1 462 236 75 46 chr13 45515203 45515377 -74229521 - LTR41 LTR ERVL -592 181 3 258 176 54 40 chr13 45516005 45516079 -74228819 + Charlie8 DNA MER1_type 79 153 -2264 3337 47 0 0 chr13 45516169 45516550 -74228348 - L1PA5 LINE L1 -1 6153 5773 238 331 79 7 chr13 45516914 45517053 -74227845 + MIR SINE MIR 96 244 -18 2620 173 47 29 chr13 45517226 45517510 -74227388 - Tigger3(Golem) DNA MER2_type 0 3029 2752 261 0 0 0 chr13 45517510 45517539 -74227359 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2620 173 47 29 chr13 45517539 45517808 -74227090 - Tigger3(Golem) DNA MER2_type -277 2752 2466 200 154 77 0 chr13 45518527 45518566 -74226332 - L2 LINE L2 -11 3302 3261 25 0 0 0 chr13 45519133 45519158 -74225740 + AT_rich Low_complexity Low_complexity 1 25 0 3702 59 0 2 chr13 45519171 45519609 -74225289 - L1PA5 LINE L1 -11 6143 5707 1000 213 228 38 chr13 45520283 45521325 -74223573 - SATR1 Satellite Satellite -8 1240 1 864 236 308 4 chr13 45521364 45522511 -74222387 - SATR1 Satellite Satellite -1 1495 1 345 241 170 9 chr13 45522638 45522750 -74222148 - SATR1 Satellite Satellite -144 326 197 586 259 72 31 chr13 45522833 45523126 -74221772 - SATR1 Satellite Satellite -24 446 142 332 229 99 164 chr13 45523196 45523519 -74221379 + L1M4b LINE L1 340 641 -6218 1772 100 4 12 chr13 45523589 45523848 -74221050 + HERVE LTR ERV1 3249 3505 -4308 * 3233 99 0 5 chr13 45523842 45524288 -74220610 + HERVE LTR ERV1 3403 3846 -3967 4172 99 7 8 chr13 45524751 45525347 -74219551 + HERVE LTR ERV1 3249 3843 -3970 295 134 6 17 chr13 45525415 45525477 -74219421 - Alu SINE Alu -263 40 1 840 163 0 0 chr13 45525701 45525824 -74219074 + FLAM_C SINE Alu 1 123 -20 30 45 0 0 chr13 45525824 45525868 -74219030 + AT_rich Low_complexity Low_complexity 1 44 0 678 130 37 0 chr13 45525887 45525995 -74218903 - L1MA5A LINE L1 -4 6293 6182 208 323 31 10 chr13 45526549 45526645 -74218253 + MIR SINE MIR 101 198 -64 293 244 26 0 chr13 45526664 45526742 -74218156 - L1MEc LINE L1 -4516 1880 1801 904 143 0 0 chr13 45526758 45526891 -74218007 + FLAM_C SINE Alu 1 133 0 2035 69 0 23 chr13 45526994 45527256 -74217642 + AluY SINE Alu 1 256 -55 2254 91 0 0 chr13 45527293 45527579 -74217319 + AluY SINE Alu 21 306 -5 2257 111 3 13 chr13 45527592 45527899 -74216999 + AluSx SINE Alu 1 304 -8 539 251 121 36 chr13 45528127 45528457 -74216441 - L1ME4a LINE L1 0 6121 5764 2703 110 128 125 chr13 45528666 45528786 -74216112 + MER4A LTR ERV1 1 119 -545 2102 120 0 3 chr13 45528786 45529110 -74215788 - AluSx SINE Alu 0 323 1 2193 122 0 0 chr13 45529116 45529419 -74215479 - AluSp SINE Alu -10 303 1 2703 110 128 125 chr13 45529419 45529952 -74214946 + MER4A LTR ERV1 123 664 0 2277 105 3 0 chr13 45530327 45530631 -74214267 + AluSg SINE Alu 1 305 -5 1832 161 0 20 chr13 45530640 45530939 -74213959 + AluSx SINE Alu 1 293 -19 2023 171 25 33 chr13 45531124 45531492 -74213406 + MLT1A1 LTR MaLR 1 365 0 2205 106 0 3 chr13 45531520 45531812 -74213086 + AluSg SINE Alu 2 292 -18 28 0 0 0 chr13 45531812 45531840 -74213058 + AT_rich Low_complexity Low_complexity 1 28 0 832 154 0 0 chr13 45533293 45533423 -74211475 - FLAM_A SINE Alu 0 142 13 2212 104 3 0 chr13 45533599 45533886 -74211012 - AluSp SINE Alu -25 288 1 241 180 45 108 chr13 45534208 45534319 -74210579 + L1ME3A LINE L1 5879 5982 -202 314 189 8 118 chr13 45534346 45534433 -74210465 + L1ME3A LINE L1 5963 6033 -137 3763 100 67 43 chr13 45534433 45535001 -74209897 - LTR9 LTR ERV1 0 612 28 2418 57 0 13 chr13 45535001 45535302 -74209596 - AluY SINE Alu -14 297 1 3763 100 67 43 chr13 45535302 45535331 -74209567 - LTR9 LTR ERV1 -584 28 1 314 189 8 118 chr13 45535331 45535370 -74209528 + L1ME3A LINE L1 6033 6075 -95 607 199 88 178 chr13 45535380 45535812 -74209086 + MSTD LTR MaLR 4 396 0 367 237 81 116 chr13 45536586 45536759 -74208139 - L2 LINE L2 -35 3278 3112 3016 85 3 0 chr13 45537890 45538253 -74206645 + THE1B LTR MaLR 1 364 0 470 212 140 78 chr13 45538336 45538529 -74206369 + MER63A DNA MER1_type 1 205 -5 532 128 9 73 chr13 45539620 45539729 -74205169 - L1MA4 LINE L1 -13 6287 6186 862 219 0 0 chr13 45539730 45539876 -74205022 + AluJb SINE Alu 140 285 -27 306 67 0 0 chr13 45540075 45540120 -74204778 + (TG)n Simple_repeat Simple_repeat 2 46 0 3766 175 25 117 chr13 45540121 45541090 -74203808 + MER21A LTR ERV1 24 903 -28 1039 157 27 11 chr13 45541111 45541296 -74203602 - L1 LINE L1 -1131 5015 4828 2189 246 55 33 chr13 45541303 45541345 -74203553 - L1M1 LINE L1 -4096 1232 1192 1707 127 109 8 chr13 45541345 45541612 -74203286 + AluSx SINE Alu 1 294 -18 2189 246 55 33 chr13 45541612 45542391 -74202507 - L1M1 LINE L1 -4136 1192 560 1524 125 36 20 chr13 45542408 45542656 -74202242 + L1MA5A LINE L1 6046 6297 0 218 282 313 8 chr13 45542936 45543067 -74201831 + MER5B DNA MER1_type 2 172 -6 434 121 0 0 chr13 45543167 45543225 -74201673 + AluS SINE Alu 2 59 -251 221 364 61 6 chr13 45543740 45543905 -74200993 + L2 LINE L2 1757 1930 -1384 2089 174 6 88 chr13 45543905 45544061 -74200837 + L1ME1 LINE L1 5449 5616 -550 2337 106 0 0 chr13 45544061 45544364 -74200534 + AluY SINE Alu 1 303 -8 2089 174 6 88 chr13 45544364 45544437 -74200461 + L1ME1 LINE L1 5616 5693 -473 1864 207 34 11 chr13 45544437 45544790 -74200108 - MLT1A1 LTR MaLR 0 365 5 2089 174 6 88 chr13 45544790 45545060 -74199838 + L1ME1 LINE L1 5693 5908 -258 2385 98 143 11 chr13 45545060 45545438 -74199460 - MSTA LTR MaLR 0 428 1 707 252 34 64 chr13 45545438 45545704 -74199194 + L1ME1 LINE L1 5904 6161 -5 305 294 24 32 chr13 45545722 45545848 -74199050 + L2 LINE L2 1917 2041 -1273 2137 119 0 0 chr13 45546179 45546474 -74198424 + AluSx SINE Alu 1 295 -17 2173 123 0 3 chr13 45548447 45548749 -74196149 - AluSx SINE Alu -11 301 1 225 183 270 78 chr13 45548767 45548882 -74196016 - MIR SINE MIR -118 144 8 186 71 0 0 chr13 45548935 45548963 -74195935 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 291 231 94 43 chr13 45549134 45549251 -74195647 + MIR SINE MIR 23 145 -63 180 220 186 17 chr13 45549585 45549644 -74195254 - L2 LINE L2 -8 3264 3196 2093 124 0 0 chr13 45550545 45550853 -74194045 - AluSx SINE Alu 0 308 1 194 298 53 76 chr13 45550855 45550944 -74193954 - L2 LINE L2 -1 3271 3184 2453 87 0 3 chr13 45550944 45551256 -74193642 + AluSx SINE Alu 1 311 -1 194 298 53 76 chr13 45551256 45551297 -74193601 - L2 LINE L2 -88 3184 3144 221 198 208 28 chr13 45551438 45551544 -74193354 + MIR SINE MIR 20 144 -64 2384 122 53 10 chr13 45551635 45552028 -74192870 - L1MB3 LINE L1 -2 6181 5772 2219 161 34 6 chr13 45552206 45552561 -74192337 - MLT1A1 LTR MaLR 0 365 1 423 298 89 25 chr13 45553430 45553588 -74191310 + MIR SINE MIR 24 191 -71 2095 132 10 0 chr13 45553595 45553890 -74191008 - AluSx SINE Alu -13 299 2 1785 141 35 35 chr13 45553922 45554042 -74190856 + AluJo SINE Alu 1 120 -192 303 28 0 0 chr13 45554042 45554078 -74190820 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1785 141 35 35 chr13 45554078 45554269 -74190629 + AluJo SINE Alu 119 312 0 201 74 0 0 chr13 45554291 45554318 -74190580 + (TTG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 45554318 45554341 -74190557 + AT_rich Low_complexity Low_complexity 1 23 0 2125 117 0 3 chr13 45555085 45555376 -74189522 - AluSx SINE Alu -22 290 1 819 181 0 21 chr13 45555453 45555597 -74189301 + FLAM_C SINE Alu 3 143 0 393 22 0 0 chr13 45556215 45556261 -74188637 + (CA)n Simple_repeat Simple_repeat 2 47 0 232 376 35 14 chr13 45557202 45557343 -74187555 - MIR SINE MIR 0 262 119 2266 97 23 0 chr13 45557454 45557753 -74187145 + AluSq SINE Alu 1 306 -7 2074 104 27 27 chr13 45557844 45558143 -74186755 + AluSx SINE Alu 1 299 -13 2295 97 0 3 chr13 45558255 45558555 -74186343 + AluSq SINE Alu 1 299 -14 2238 204 67 71 chr13 45559004 45560276 -74184622 + L1MC4 LINE L1 4711 5397 -749 1966 133 56 0 chr13 45560509 45560794 -74184104 - AluSx SINE Alu -11 301 1 256 179 18 18 chr13 45561111 45561167 -74183731 + L1M4 LINE L1 4188 4243 -1903 503 229 133 60 chr13 45561240 45561508 -74183390 - MLT1H1 LTR MaLR -30 525 186 893 132 0 8 chr13 45561805 45561934 -74182964 + AluJb SINE Alu 26 153 -159 10173 42 9 0 chr13 45562870 45564803 -74180095 - L1PA5 LINE L1 -4 6150 4196 194 100 67 17 chr13 45565608 45565668 -74179230 + T-rich Low_complexity Low_complexity 6 68 0 2005 167 3 0 chr13 45565686 45565997 -74178901 - AluJb SINE Alu 0 312 1 296 243 39 48 chr13 45566093 45566196 -74178702 - MIR SINE MIR -119 143 42 264 77 51 0 chr13 45566213 45566252 -74178646 - MADE1 DNA Mariner -39 41 1 820 90 0 30 chr13 45566675 45566841 -74178057 - SVA Other Other -606 780 620 826 124 0 0 chr13 45566853 45566966 -74177932 - AluJb SINE Alu -187 125 13 247 206 0 15 chr13 45568078 45568127 -74176771 + A-rich Low_complexity Low_complexity 4 53 -17 243 0 0 0 chr13 45568127 45568154 -74176744 + (CA)n Simple_repeat Simple_repeat 2 28 0 247 206 0 15 chr13 45568154 45568172 -74176726 + A-rich Low_complexity Low_complexity 53 70 0 2245 103 0 7 chr13 45569140 45569432 -74175466 + AluSg SINE Alu 1 290 -20 2202 110 16 7 chr13 45569789 45570098 -74174800 + AluSx SINE Alu 1 312 0 386 275 259 0 chr13 45570100 45570231 -74174667 - MER5A DNA MER1_type -16 173 9 382 312 163 21 chr13 45570414 45570843 -74174055 - LTR33 LTR ERVL -4 517 28 467 139 0 0 chr13 45571821 45571900 -74172998 - L1MB4 LINE L1 -5 6175 6097 22 0 0 0 chr13 45571907 45571929 -74172969 + AT_rich Low_complexity Low_complexity 1 22 0 2321 100 6 3 chr13 45572007 45572318 -74172580 - AluSq SINE Alu -1 312 1 514 197 58 122 chr13 45572660 45572848 -74172050 + MIR SINE MIR 17 192 -70 594 247 89 49 chr13 45572851 45573139 -74171759 - MLT1J2 LTR MaLR -3 447 102 207 0 0 0 chr13 45573156 45573179 -74171719 + (A)n Simple_repeat Simple_repeat 1 23 0 456 242 100 0 chr13 45573179 45573299 -74171599 - LTR33 LTR ERVL -17 504 373 262 324 142 17 chr13 45573340 45573516 -74171382 - LTR33 LTR ERVL -321 200 3 231 250 0 0 chr13 45573519 45573571 -74171327 + MIR SINE MIR 199 250 -12 333 273 103 48 chr13 45574249 45574414 -74170484 - L3 LINE CR1 0 1577 1404 * 347 324 67 31 chr13 45574408 45574633 -74170265 - MIR SINE MIR -22 240 8 192 306 74 28 chr13 45574818 45574889 -74170009 - MIR SINE MIR -70 192 113 1913 181 0 6 chr13 45574889 45575203 -74169695 + AluJb SINE Alu 1 312 0 192 306 74 28 chr13 45575203 45575239 -74169659 - MIR SINE MIR -149 113 80 235 344 42 21 chr13 45575245 45575341 -74169557 - MIR3 SINE MIR -107 101 4 195 42 0 0 chr13 45576165 45576189 -74168709 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1158 169 5 50 chr13 45576194 45576413 -74168485 - AluJb SINE Alu -23 289 81 2448 140 8 3 chr13 45576543 45576907 -74167991 + MER47A DNA MER2_type 1 366 0 232 290 43 0 chr13 45577086 45577155 -74167743 - MIR SINE MIR -31 231 160 277 311 172 8 chr13 45577769 45577891 -74167007 + L2 LINE L2 3129 3270 -2 207 299 37 19 chr13 45578727 45578834 -74166064 + MIR SINE MIR 100 208 -54 1103 179 20 0 chr13 45578937 45579133 -74165765 - MER44D DNA MER2_type -2 703 504 22 35 0 0 chr13 45579523 45579552 -74165346 + AT_rich Low_complexity Low_complexity 1 29 0 1610 38 0 0 chr13 45579818 45580080 -74164818 + (G)n Simple_repeat Simple_repeat 1 262 0 833 171 0 27 chr13 45580084 45580230 -74164668 - MER44D DNA MER2_type -197 412 1 2133 116 0 49 chr13 45580560 45580887 -74164011 + AluSx SINE Alu 1 311 -1 799 232 57 38 chr13 45581268 45581531 -74163367 - LTR40b LTR ERVL -2 460 193 326 300 18 71 chr13 45581861 45582031 -74162867 + MLT1K LTR MaLR 347 507 -81 2266 171 19 102 chr13 45582090 45582656 -74162242 - MLT2B1 LTR ERVL -1 519 1 437 0 0 19 chr13 45583000 45583054 -74161844 + (GA)n Simple_repeat Simple_repeat 1 53 0 1973 106 3 78 chr13 45584514 45584835 -74160063 - AluSq SINE Alu -16 297 1 287 278 0 19 chr13 45584928 45585036 -74159862 + (TA)n Simple_repeat Simple_repeat 2 107 0 508 260 110 59 chr13 45585050 45585323 -74159575 - L1MC4 LINE L1 -143 7899 7613 2342 100 3 3 chr13 45585333 45585643 -74159255 - AluSq SINE Alu -3 310 1 39 22 0 0 chr13 45585702 45585748 -74159150 + AT_rich Low_complexity Low_complexity 1 46 0 265 307 88 44 chr13 45585862 45586067 -74158831 - L1MC4 LINE L1 -547 7495 7282 1952 149 0 19 chr13 45586485 45586800 -74158098 + AluJb SINE Alu 1 309 -3 2551 95 34 3 chr13 45588952 45589331 -74155567 - MER39B LTR ERV1 0 653 263 596 38 0 12 chr13 45589331 45589411 -74155487 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 3222 138 40 0 chr13 45589539 45590045 -74154853 - L1MC2 LINE L1 -288 6056 5531 426 278 103 64 chr13 45590191 45590349 -74154549 - MIR SINE MIR 0 262 91 2261 112 0 0 chr13 45590349 45590645 -74154253 + AluSx SINE Alu 1 296 -16 426 278 103 64 chr13 45590645 45590720 -74154178 - MIR SINE MIR -171 91 20 1372 174 56 62 chr13 45590821 45591148 -74153750 + LTR37A LTR ERV1 39 365 -61 2195 128 0 0 chr13 45591148 45591453 -74153445 - AluSx SINE Alu -7 305 1 1372 174 56 62 chr13 45591453 45591515 -74153383 + LTR37A LTR ERV1 365 426 0 1957 123 42 0 chr13 45591566 45591850 -74153048 + AluSx SINE Alu 5 300 -12 469 352 11 11 chr13 45592476 45592658 -74152240 - MIR3 SINE MIR -7 201 20 21 0 0 0 chr13 45593117 45593138 -74151760 + AT_rich Low_complexity Low_complexity 1 21 0 346 351 39 13 chr13 45594995 45595149 -74149749 + MIR3 SINE MIR 19 176 -32 202 311 104 37 chr13 45595989 45596124 -74148774 + L2 LINE L2 3121 3264 -8 25 75 0 0 chr13 45596359 45596412 -74148486 + AT_rich Low_complexity Low_complexity 1 53 0 453 237 20 33 chr13 45597566 45597718 -74147180 - MER103 DNA DNA -7 159 10 1914 164 32 18 chr13 45597828 45598170 -74146728 + MER7A DNA MER2_type 1 345 -1 2346 85 0 3 chr13 45598388 45598683 -74146215 - AluSc SINE Alu -15 294 1 1836 86 14 50 chr13 45598883 45599072 -74145826 - L1PB1 LINE L1 -2 6149 5972 2150 122 3 0 chr13 45599072 45599366 -74145532 - AluSx SINE Alu -17 295 1 1836 86 14 50 chr13 45599366 45599455 -74145443 - L1PB1 LINE L1 -179 5972 5881 2025 128 4 0 chr13 45600083 45600385 -74144513 + AluSx SINE Alu 1 303 0 1564 114 152 73 chr13 45600387 45600676 -74144222 + AluSq SINE Alu 1 312 -1 21 36 0 0 chr13 45600966 45600994 -74143904 + AT_rich Low_complexity Low_complexity 1 28 0 182 274 62 82 chr13 45601549 45601695 -74143203 - L2 LINE L2 -1 3312 3170 188 299 182 32 chr13 45603004 45603191 -74141707 + MIR SINE MIR 30 244 -18 21 36 0 0 chr13 45603871 45603899 -74140999 + GC_rich Low_complexity Low_complexity 1 28 0 225 65 0 0 chr13 45603981 45604012 -74140886 + (CCA)n Simple_repeat Simple_repeat 3 33 0 22 0 0 0 chr13 45604019 45604041 -74140857 + GC_rich Low_complexity Low_complexity 1 22 0 358 297 36 14 chr13 45607127 45607265 -74137633 - MIR SINE MIR -114 148 8 439 203 81 47 chr13 45607331 45607479 -74137419 - L2 LINE L2 -3 3310 3158 1615 142 44 22 chr13 45607933 45608068 -74136830 + AluJb SINE Alu 1 132 -177 2033 119 0 52 chr13 45608068 45608404 -74136494 + AluSx SINE Alu 1 312 0 1615 142 44 22 chr13 45608404 45608571 -74136327 + AluJb SINE Alu 132 309 0 1799 155 11 0 chr13 45608961 45609264 -74135634 + AluSx SINE Alu 1 306 0 21 0 0 0 chr13 45609696 45609717 -74135181 + AT_rich Low_complexity Low_complexity 1 21 0 1931 165 20 48 chr13 45612756 45613156 -74131742 - MLT1B LTR MaLR 0 390 2 701 261 17 11 chr13 45613868 45614048 -74130850 + MIR SINE MIR 3 183 -79 242 308 15 0 chr13 45614061 45614126 -74130772 - MIR SINE MIR 0 262 197 347 217 16 78 chr13 45614264 45614393 -74130505 - MIR3 SINE MIR -40 168 48 216 294 77 47 chr13 45615215 45615385 -74129513 + MIR SINE MIR 65 239 -23 565 199 232 0 chr13 45615486 45615667 -74129231 + MIR SINE MIR 7 229 -33 195 333 132 0 chr13 45615880 45615994 -74128904 - MIR3 SINE MIR -65 143 15 2068 125 7 0 chr13 45616037 45616317 -74128581 + AluSx SINE Alu 1 282 -30 396 59 0 0 chr13 45616320 45616371 -74128527 + (TAA)n Simple_repeat Simple_repeat 2 52 0 198 263 139 44 chr13 45617007 45617144 -74127754 - MIR SINE MIR -70 192 43 315 0 0 0 chr13 45618000 45618035 -74126863 + (TG)n Simple_repeat Simple_repeat 2 36 0 409 215 112 0 chr13 45618737 45618844 -74126054 - MER94 DNA DNA -15 119 1 569 222 99 47 chr13 45619181 45619386 -74125512 + L1ME2 LINE L1 5955 6177 -1 246 279 140 39 chr13 45619748 45619927 -74124971 - MIR SINE MIR -10 252 56 491 304 54 6 chr13 45620576 45620744 -74124154 - MIR SINE MIR -32 230 55 182 350 80 0 chr13 45620935 45621035 -74123863 - MIR SINE MIR -133 129 22 509 301 40 6 chr13 45622173 45622346 -74122552 + MIR SINE MIR 10 188 -74 312 120 0 0 chr13 45622388 45622438 -74122460 + (GA)n Simple_repeat Simple_repeat 1 50 0 715 261 81 0 chr13 45623407 45623618 -74121280 + MIR SINE MIR 34 261 -1 274 256 56 81 chr13 45623631 45623791 -74121107 + L2 LINE L2 3158 3313 0 4283 79 32 48 chr13 45623876 45624352 -74120546 + L1MA2 LINE L1 5635 6117 -187 198 0 0 0 chr13 45624352 45624374 -74120524 + (TA)n Simple_repeat Simple_repeat 2 23 0 1939 98 83 18 chr13 45624374 45624651 -74120247 - AluSx SINE Alu -17 295 1 4283 79 32 48 chr13 45624651 45624854 -74120044 + L1MA2 LINE L1 6115 6304 0 216 0 0 0 chr13 45625329 45625353 -74119545 + (T)n Simple_repeat Simple_repeat 1 24 0 315 0 0 0 chr13 45626017 45626052 -74118846 + (TG)n Simple_repeat Simple_repeat 2 36 0 1259 212 109 9 chr13 45627281 45627593 -74117305 - MLT1E1 LTR MaLR 0 654 375 2223 113 3 13 chr13 45627593 45627904 -74116994 - AluSq SINE Alu -5 308 1 1259 212 109 9 chr13 45627904 45628079 -74116819 - MLT1E1 LTR MaLR -279 375 57 488 306 77 24 chr13 45631972 45632220 -74112678 - MIR SINE MIR 0 262 2 2006 120 0 0 chr13 45632410 45632686 -74112212 + AluSx SINE Alu 37 312 0 1650 167 0 55 chr13 45632996 45633307 -74111591 - AluJb SINE Alu -18 294 1 1235 117 0 0 chr13 45634263 45634434 -74110464 - AluSg/x SINE Alu -8 304 134 531 216 169 7 chr13 45634815 45634963 -74109935 + MER5A DNA MER1_type 9 180 -9 2226 67 84 0 chr13 45635802 45636086 -74108812 + AluY SINE Alu 1 308 -3 1998 139 0 10 chr13 45636922 45637225 -74107673 - AluJb SINE Alu -12 300 1 23 0 0 0 chr13 45638495 45638518 -74106380 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 45638721 45638742 -74106156 + AT_rich Low_complexity Low_complexity 1 21 0 2303 98 0 10 chr13 45639103 45639409 -74105489 - AluSx SINE Alu -9 303 1 641 236 54 106 chr13 45639466 45639555 -74105343 - L1MC4 LINE L1 -124 7918 7826 1706 168 36 7 chr13 45639555 45639835 -74105063 - AluJo SINE Alu -24 288 1 641 236 54 106 chr13 45639835 45640100 -74104798 - L1MC4 LINE L1 -216 7826 7498 2140 138 0 0 chr13 45640100 45640405 -74104493 - AluSq SINE Alu -6 307 3 641 236 54 106 chr13 45640405 45640602 -74104296 - L1MC4 LINE L1 -544 7498 7292 1088 179 0 0 chr13 45641022 45641201 -74103697 + FRAM SINE Alu 1 176 0 237 132 0 0 chr13 45643770 45643808 -74101090 + (T)n Simple_repeat Simple_repeat 1 38 0 261 272 12 0 chr13 45644586 45644667 -74100231 - MIR SINE MIR -149 113 32 3020 200 9 47 chr13 45647527 45647866 -74097032 - MER82 DNA MER2_type 0 653 351 2339 98 0 0 chr13 45647866 45648161 -74096737 - AluSq SINE Alu -18 295 1 3020 200 9 47 chr13 45648161 45648496 -74096402 - MER82 DNA MER2_type -302 351 5 1275 95 0 0 chr13 45648503 45648661 -74096237 + AluSq SINE Alu 1 158 -155 22 35 0 0 chr13 45649006 45649035 -74095863 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 45649423 45649452 -74095446 + AT_rich Low_complexity Low_complexity 1 29 0 4060 141 42 20 chr13 45649769 45650455 -74094443 - L1MB2 LINE L1 0 6171 5471 207 167 50 67 chr13 45650685 45650745 -74094153 + L2 LINE L2 3255 3313 0 23 0 0 0 chr13 45650903 45650926 -74093972 + AT_rich Low_complexity Low_complexity 1 23 0 1171 69 0 7 chr13 45650964 45651109 -74093789 - AluSq/x SINE Alu -168 144 1 235 241 0 0 chr13 45651462 45651516 -74093382 + MER112 DNA MER1_type 1 54 -206 333 0 0 0 chr13 45651541 45651578 -74093320 + (CA)n Simple_repeat Simple_repeat 2 38 0 302 323 21 11 chr13 45652984 45653077 -74091821 + MIR SINE MIR 30 123 -85 507 272 80 46 chr13 45653317 45653556 -74091342 + MIR SINE MIR 16 262 0 1601 179 22 0 chr13 45653595 45653869 -74091029 + AluJb SINE Alu 1 280 -32 423 56 0 0 chr13 45653874 45653928 -74090970 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1726 147 44 4 chr13 45654607 45654879 -74090019 - AluJo SINE Alu -29 283 1 1116 119 38 16 chr13 45655001 45655186 -74089712 + MER53 DNA DNA 1 189 0 275 127 0 18 chr13 45656430 45656485 -74088413 + (TCC)n Simple_repeat Simple_repeat 2 55 0 671 289 17 0 chr13 45656810 45656983 -74087915 - MIR3 SINE MIR -13 195 20 279 0 0 0 chr13 45657071 45657102 -74087796 + (TG)n Simple_repeat Simple_repeat 2 32 0 811 191 122 69 chr13 45657456 45657479 -74087419 - MER74B LTR ERVL -57 565 545 1908 140 14 0 chr13 45657479 45657788 -74087110 - AluSx SINE Alu 0 314 2 811 191 122 69 chr13 45657788 45658082 -74086816 - MER74B LTR ERVL -77 545 230 252 254 0 0 chr13 45658120 45658175 -74086723 - MER74B LTR ERVL -565 57 3 368 139 42 0 chr13 45658499 45658571 -74086327 + CT-rich Low_complexity Low_complexity 5 79 0 302 300 46 23 chr13 45660528 45660658 -74084240 - L2 LINE L2 -4 3268 3136 22 35 0 0 chr13 45660658 45660687 -74084211 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr13 45661323 45661363 -74083535 + AT_rich Low_complexity Low_complexity 1 40 0 1845 95 0 46 chr13 45661451 45661736 -74083162 - L1PB1 LINE L1 -204 5947 5676 305 266 46 0 chr13 45662346 45662455 -74082443 + Charlie5 DNA MER1_type 10 123 -2489 1204 183 110 27 chr13 45662470 45662798 -74082100 + Charlie5 DNA MER1_type 2268 2622 0 678 113 0 106 chr13 45663018 45663160 -74081738 + L1PA7 LINE L1 6028 6154 0 2319 84 7 0 chr13 45664029 45664326 -74080572 + AluSc SINE Alu 1 299 -10 528 209 29 0 chr13 45664507 45664612 -74080286 - MER5B DNA MER1_type -6 172 65 1167 223 55 0 chr13 45664923 45665197 -74079701 - L1MA9 LINE L1 -36 6276 5988 2595 149 21 14 chr13 45666031 45666454 -74078444 - MSTB LTR MaLR 0 426 1 1649 149 110 65 chr13 45667623 45668052 -74076846 - LTR7 LTR ERV1 -2 448 1 505 261 61 61 chr13 45668168 45668348 -74076550 + MIR3 SINE MIR 3 182 -26 318 327 77 0 chr13 45668791 45668895 -74076003 - L2 LINE L2 -1 3271 3160 1765 127 6 100 chr13 45668939 45669279 -74075619 - Tigger3(Golem) DNA MER2_type -1 3028 2721 257 274 123 0 chr13 45669277 45669350 -74075548 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 456 67 0 0 chr13 45669971 45670031 -74074867 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 2124 114 3 3 chr13 45670031 45670328 -74074570 - AluSx SINE Alu -15 297 1 186 118 0 0 chr13 45670650 45670684 -74074214 + (TTG)n Simple_repeat Simple_repeat 2 35 0 833 175 15 0 chr13 45671158 45671295 -74073603 + FRAM SINE Alu 22 160 -16 271 283 0 0 chr13 45674683 45674736 -74070162 + MIR SINE MIR 23 75 -187 493 101 56 45 chr13 45674866 45674955 -74069943 - L1MB4 LINE L1 0 6180 6091 397 230 78 84 chr13 45674957 45675077 -74069821 + MIR SINE MIR 66 186 -76 2127 138 0 3 chr13 45675077 45675375 -74069523 + AluSx SINE Alu 1 297 -15 397 230 78 84 chr13 45675375 45675445 -74069453 + MIR SINE MIR 186 255 -7 298 309 86 82 chr13 45676773 45677037 -74067861 + L2 LINE L2 2131 2393 -921 2539 57 3 0 chr13 45677037 45677335 -74067563 - AluSg SINE Alu -11 299 1 298 309 86 82 chr13 45677335 45677595 -74067303 + L2 LINE L2 2393 2657 -657 236 345 115 40 chr13 45677607 45677981 -74066917 + L2 LINE L2 2869 3270 -2 540 301 166 12 chr13 45678300 45678625 -74066273 + L2 LINE L2 1207 1581 -1733 1360 85 6 0 chr13 45678625 45678801 -74066097 - AluY SINE Alu -9 302 126 1347 45 0 0 chr13 45681207 45681362 -74063536 - L1PA5 LINE L1 0 6154 6000 1962 164 0 3 chr13 45681369 45681680 -74063218 - AluJo SINE Alu -2 310 1 269 214 36 0 chr13 45682756 45682810 -74062088 - MLT1G1 LTR MaLR -3 592 537 1713 128 28 92 chr13 45682810 45683130 -74061768 + MLT1A1 LTR MaLR 1 297 -68 1879 154 3 22 chr13 45683130 45683448 -74061450 - AluJb SINE Alu 0 312 1 1713 128 28 92 chr13 45683448 45683487 -74061411 + MLT1A1 LTR MaLR 297 337 -28 1535 157 119 72 chr13 45683774 45684202 -74060696 + LTR7 LTR ERV1 1 448 -2 188 316 95 63 chr13 45684528 45684623 -74060275 + MIR SINE MIR 1 98 -164 2063 106 0 65 chr13 45685853 45686175 -74058723 + AluSg SINE Alu 3 303 -7 1247 177 0 63 chr13 45687561 45687614 -74057284 - L1MB2 LINE L1 -3 6168 6113 2337 96 6 13 chr13 45687614 45687926 -74056972 - AluSx SINE Alu -2 310 1 1247 177 0 63 chr13 45687926 45688126 -74056772 - L1MB2 LINE L1 -58 6113 5931 2575 269 118 11 chr13 45688131 45689472 -74055426 + L2 LINE L2 1823 3307 -6 926 234 18 32 chr13 45691799 45692017 -74052881 - MIR SINE MIR -10 252 38 341 241 195 79 chr13 45692167 45692408 -74052490 - L2 LINE L2 -4 3309 3041 592 260 34 17 chr13 45693877 45694054 -74050844 + MIR SINE MIR 13 192 -70 383 296 121 15 chr13 45694388 45694520 -74050378 + MER5B DNA MER1_type 30 175 -3 279 307 113 20 chr13 45697101 45697251 -74047647 - MIR3 SINE MIR -12 196 33 21 57 0 0 chr13 45698043 45698078 -74046820 + AT_rich Low_complexity Low_complexity 1 35 0 404 217 17 58 chr13 45698085 45698205 -74046693 - L1MC4a LINE L1 -1898 5910 5796 424 235 181 0 chr13 45698329 45698387 -74046511 - L1MC4a LINE L1 -2037 5771 5725 2229 125 0 0 chr13 45698387 45698690 -74046208 + AluSx SINE Alu 1 303 -9 424 235 181 0 chr13 45698690 45698797 -74046101 - L1MC4a LINE L1 -2083 5725 5576 680 232 41 41 chr13 45698815 45699061 -74045837 - L1MC4a LINE L1 -2295 5513 5268 3136 119 45 0 chr13 45699455 45699943 -74044955 - MER1A DNA MER1_type 0 529 20 545 86 25 0 chr13 45700530 45700611 -74044287 + L1PA6 LINE L1 5802 5884 -270 1118 173 0 0 chr13 45701228 45701401 -74043497 + AluJb SINE Alu 126 298 -14 25 51 0 0 chr13 45702117 45702156 -74042742 + AT_rich Low_complexity Low_complexity 1 39 0 183 80 0 0 chr13 45702279 45702304 -74042594 + (A)n Simple_repeat Simple_repeat 1 25 0 2121 89 14 14 chr13 45702937 45703230 -74041668 + AluSq SINE Alu 1 293 -20 697 206 41 105 chr13 45703449 45703838 -74041060 + L1MC5 LINE L1 6695 7058 -903 279 0 0 0 chr13 45703841 45703872 -74041026 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 777 167 14 0 chr13 45703872 45704016 -74040882 - FRAM SINE Alu -18 148 3 1216 46 7 0 chr13 45704020 45704213 -74040685 - AluY SINE Alu 0 320 127 2573 55 0 0 chr13 45704218 45704529 -74040369 - AluY SINE Alu 0 311 1 1937 116 31 20 chr13 45705696 45706011 -74038887 + AluJb SINE Alu 1 312 0 317 134 0 45 chr13 45707272 45707339 -74037559 + (ATGGTG)n Simple_repeat Simple_repeat 5 68 0 199 217 22 0 chr13 45708773 45708819 -74036079 - L3 LINE CR1 -7 1570 1524 205 151 38 0 chr13 45709603 45709656 -74035242 + CT-rich Low_complexity Low_complexity 3 57 0 360 0 0 0 chr13 45710512 45710552 -74034346 + (TG)n Simple_repeat Simple_repeat 1 40 0 2262 145 23 16 chr13 45710687 45711074 -74033824 - MLT1B LTR MaLR 0 390 1 201 171 0 0 chr13 45714452 45714487 -74030411 + T-rich Low_complexity Low_complexity 1 35 0 3795 106 72 13 chr13 45714671 45715286 -74029612 - MER39B LTR ERV1 0 653 3 2222 121 0 0 chr13 45715541 45715848 -74029050 - AluSx SINE Alu -5 307 1 228 35 0 0 chr13 45718302 45718331 -74026567 + (TTCTG)n Simple_repeat Simple_repeat 4 32 0 198 94 0 0 chr13 45719597 45719629 -74025269 + L2 LINE L2 3281 3312 -1 1567 150 108 81 chr13 45720051 45720287 -74024611 - MSTB LTR MaLR -1 425 172 2359 92 0 0 chr13 45720287 45720582 -74024316 - AluSc SINE Alu -14 295 1 1567 150 108 81 chr13 45720582 45720752 -74024146 - MSTB LTR MaLR -254 172 8 947 161 169 4 chr13 45720813 45721055 -74023843 - L1ME3A LINE L1 -50 6120 5839 484 291 84 11 chr13 45721318 45721497 -74023401 - MIR SINE MIR 0 262 71 1288 83 0 22 chr13 45721558 45721738 -74023160 - AluSg/x SINE Alu -8 304 129 671 286 142 25 chr13 45721776 45722136 -74022762 - MLT1J1 LTR MaLR 0 446 45 295 321 101 0 chr13 45722141 45722250 -74022648 + MIR3 SINE MIR 87 206 -2 213 293 103 52 chr13 45723028 45723144 -74021754 + L2 LINE L2 3184 3305 -8 342 0 0 0 chr13 45724789 45724827 -74020071 + (CA)n Simple_repeat Simple_repeat 2 39 0 1717 175 11 0 chr13 45725381 45725667 -74019231 + AluJb SINE Alu 1 289 -23 2948 199 7 53 chr13 45725733 45726417 -74018481 + MER82 DNA MER2_type 1 653 0 2181 157 34 23 chr13 45727386 45727863 -74017035 - L1MB2 LINE L1 -4 6167 5686 854 220 86 10 chr13 45728421 45728630 -74016268 - MIR SINE MIR -6 256 32 364 222 196 39 chr13 45729126 45729279 -74015619 - MER5B DNA MER1_type -1 177 1 206 382 36 27 chr13 45730664 45730774 -74014124 - L2 LINE L2 -8 3264 3154 2258 122 0 0 chr13 45730811 45731123 -74013775 + AluSx SINE Alu 1 312 0 196 329 38 0 chr13 45731366 45731445 -74013453 - MER5A DNA MER1_type 0 189 108 430 215 93 0 chr13 45731910 45732017 -74012881 + MIR SINE MIR 85 201 -61 485 278 111 57 chr13 45732019 45732461 -74012437 + L1ME4a LINE L1 5531 5996 -125 249 280 251 5 chr13 45734746 45734953 -74009945 + MIR SINE MIR 3 260 -2 640 178 8 17 chr13 45735177 45735295 -74009603 - AluJo SINE Alu -176 136 20 22 70 0 0 chr13 45735306 45735349 -74009549 + AT_rich Low_complexity Low_complexity 1 43 0 1208 272 33 65 chr13 45735418 45736124 -74008774 - L1MC4 LINE L1 -92 7950 7268 449 293 49 8 chr13 45736378 45736501 -74008397 - L2 LINE L2 -1 3312 3185 2158 122 20 0 chr13 45736868 45737163 -74007735 - AluSq SINE Alu -12 301 1 1993 146 0 52 chr13 45738322 45738706 -74006192 - AluJb SINE Alu 0 367 1 545 302 102 53 chr13 45739096 45739349 -74005549 - L1M4 LINE L1 -3020 3126 2842 1736 179 3 13 chr13 45739349 45739656 -74005242 - AluJb SINE Alu -6 306 3 545 302 102 53 chr13 45739656 45739832 -74005066 - L1M4 LINE L1 -3304 2842 2676 243 0 0 0 chr13 45740041 45740068 -74004830 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2031 123 0 0 chr13 45740078 45740354 -74004544 - AluSx SINE Alu -36 276 1 2194 47 72 11 chr13 45740896 45741175 -74003723 - AluY SINE Alu -15 296 1 401 358 46 14 chr13 45742060 45742278 -74002620 + MIR SINE MIR 32 256 -6 21 36 0 0 chr13 45742649 45742677 -74002221 + AT_rich Low_complexity Low_complexity 1 28 0 1657 80 5 0 chr13 45742793 45742994 -74001904 + AluSg SINE Alu 1 202 -108 24 32 0 0 chr13 45744030 45744061 -74000837 + AT_rich Low_complexity Low_complexity 1 31 0 1593 140 10 143 chr13 45745112 45745512 -73999386 + MER7A DNA MER2_type 2 346 0 253 216 226 74 chr13 45745650 45745783 -73999115 - MIR SINE MIR -67 141 19 22 56 0 0 chr13 45745896 45745932 -73998966 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 45747141 45747162 -73997736 + AT_rich Low_complexity Low_complexity 1 21 0 366 155 0 0 chr13 45748234 45748305 -73996593 - L1ME3A LINE L1 -5 6165 6095 2029 37 0 4 chr13 45748305 45748551 -73996347 + L1PA5 LINE L1 5910 6154 0 385 232 101 7 chr13 45748629 45748767 -73996131 - L1ME4a LINE L1 0 6121 5971 33 0 0 0 chr13 45749670 45749703 -73995195 + AT_rich Low_complexity Low_complexity 1 33 0 204 299 104 0 chr13 45750754 45750831 -73994067 - L2 LINE L2 -38 3234 3150 183 318 47 9 chr13 45751686 45751793 -73993105 - L2 LINE L2 -291 2981 2871 406 346 96 30 chr13 45751861 45752313 -73992585 + L2 LINE L2 2779 3265 -7 3633 89 87 3 chr13 45752618 45753190 -73991708 - L1MC1 LINE L1 -9 6324 5705 309 274 20 89 chr13 45753652 45753798 -73991100 - MIR3 SINE MIR -14 194 59 1025 209 35 11 chr13 45753807 45754090 -73990808 - MER33 DNA MER1_type 0 324 35 2067 105 0 81 chr13 45754608 45754941 -73989957 - AluSx SINE Alu -6 306 1 30 0 0 0 chr13 45755000 45755030 -73989868 + AT_rich Low_complexity Low_complexity 1 30 0 528 305 126 0 chr13 45755519 45755742 -73989156 - MIR SINE MIR -11 251 1 1958 81 77 0 chr13 45756856 45757116 -73987782 + AluSg SINE Alu 1 280 -30 1833 179 3 10 chr13 45757632 45757939 -73986959 - AluJb SINE Alu -7 305 1 2019 89 0 62 chr13 45757987 45758279 -73986619 + AluSx SINE Alu 1 274 -38 185 0 40 0 chr13 45758286 45758311 -73986587 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 338 336 103 63 chr13 45761135 45761817 -73983081 - L2 LINE L2 -16 3256 2551 286 317 126 15 chr13 45762156 45762355 -73982543 + MIR SINE MIR 6 226 -36 201 222 0 0 chr13 45762968 45763004 -73981894 + polypurine Low_complexity Low_complexity 1 36 0 241 387 104 6 chr13 45764901 45765265 -73979633 + L2 LINE L2 2076 2475 -839 204 259 231 9 chr13 45765681 45765789 -73979109 - L2 LINE L2 -4 3309 3178 29 47 0 0 chr13 45768349 45768392 -73976506 + AT_rich Low_complexity Low_complexity 1 43 0 283 299 78 0 chr13 45771109 45771234 -73973664 - MIR SINE MIR -68 140 37 229 302 62 10 chr13 45772315 45772411 -73972487 - MIR SINE MIR -56 206 106 413 337 5 43 chr13 45772415 45772599 -73972299 - MER5B DNA MER1_type -1 177 1 344 345 0 18 chr13 45773061 45773171 -73971727 - L2 LINE L2 -15 3298 3191 2201 117 0 0 chr13 45773736 45774036 -73970862 + AluSx SINE Alu 2 301 -11 1918 145 0 0 chr13 45774124 45774406 -73970492 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr13 45775440 45775462 -73969436 + AT_rich Low_complexity Low_complexity 1 22 0 279 312 32 48 chr13 45777404 45777529 -73967369 + MIR SINE MIR 18 140 -122 1544 180 4 0 chr13 45777538 45777788 -73967110 + AluJo SINE Alu 1 251 -61 25 31 0 0 chr13 45777951 45777983 -73966915 + AT_rich Low_complexity Low_complexity 1 32 0 1201 179 0 5 chr13 45777985 45778186 -73966712 - AluSg/x SINE Alu 0 310 111 231 147 0 0 chr13 45778189 45778223 -73966675 - Alu SINE Alu -266 35 2 737 208 25 44 chr13 45778227 45778386 -73966512 - FRAM SINE Alu -10 156 1 3326 143 15 0 chr13 45778824 45779362 -73965536 + L1PA16 LINE L1 5604 6149 -17 505 260 72 22 chr13 45779416 45779597 -73965301 - L2 LINE L2 -1 3312 3123 2034 232 75 22 chr13 45780176 45781299 -73963599 + L1MDa LINE L1 -95 1286 -5140 655 190 11 49 chr13 45781408 45781623 -73963275 + L1MDa LINE L1 1147 1440 -4986 1024 99 0 0 chr13 45781661 45781792 -73963106 - AluSg/x SINE Alu -14 296 166 1141 133 90 5 chr13 45781792 45782003 -73962895 + L1MD1 LINE L1 6009 6237 -5 1906 177 3 3 chr13 45782062 45782373 -73962525 - AluSx SINE Alu -1 311 1 2049 115 31 0 chr13 45782386 45782672 -73962226 - AluSx SINE Alu -17 295 1 23 0 0 0 chr13 45783335 45783358 -73961540 + AT_rich Low_complexity Low_complexity 1 23 0 1655 132 28 68 chr13 45783412 45783737 -73961161 + AluJo SINE Alu 1 312 0 31 26 0 0 chr13 45785114 45785152 -73959746 + AT_rich Low_complexity Low_complexity 1 38 0 203 167 0 0 chr13 45785173 45785209 -73959689 + A-rich Low_complexity Low_complexity 4 39 0 2099 103 28 0 chr13 45785397 45785687 -73959211 - AluSx SINE Alu -14 298 1 185 264 14 0 chr13 45788131 45788203 -73956695 + (TA)n Simple_repeat Simple_repeat 1 73 0 392 213 56 69 chr13 45788224 45788440 -73956458 + L1ME4a LINE L1 5891 6103 -18 21 0 0 0 chr13 45788643 45788664 -73956234 + AT_rich Low_complexity Low_complexity 1 21 0 227 227 15 0 chr13 45789558 45789624 -73955274 + CT-rich Low_complexity Low_complexity 3 69 0 2322 108 0 13 chr13 45790391 45790705 -73954193 - AluSx SINE Alu -2 310 1 333 0 0 0 chr13 45790727 45790764 -73954134 + (TG)n Simple_repeat Simple_repeat 2 38 0 731 189 8 0 chr13 45791886 45792008 -73952890 - FLAM_C SINE Alu -10 123 1 253 309 126 80 chr13 45799590 45799696 -73945202 - L2 LINE L2 0 3272 3172 1002 218 23 5 chr13 45799696 45799916 -73944982 - MER58A DNA MER1_type 0 224 1 253 309 126 80 chr13 45799916 45800223 -73944675 - L2 LINE L2 -100 3172 2840 544 262 102 36 chr13 45800699 45800924 -73943974 + MIR SINE MIR 4 243 -19 332 294 41 104 chr13 45802252 45802350 -73942548 - L1M4 LINE L1 -798 5348 5245 1766 161 0 14 chr13 45802350 45802641 -73942257 - AluJo SINE Alu -15 297 11 332 294 41 104 chr13 45802641 45802957 -73941941 - L1M4 LINE L1 -901 5245 4960 1516 121 4 9 chr13 45803805 45804037 -73940861 + L1MA7 LINE L1 5802 6032 -259 1066 138 28 18 chr13 45804037 45804247 -73940651 + L1MA8 LINE L1 6072 6291 0 212 224 86 0 chr13 45805376 45805434 -73939464 + L3 LINE CR1 1339 1401 -176 28 0 0 0 chr13 45805731 45805759 -73939139 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr13 45807367 45807419 -73937479 + AT_rich Low_complexity Low_complexity 1 52 0 288 0 0 0 chr13 45807694 45807726 -73937172 + (CA)n Simple_repeat Simple_repeat 1 32 0 187 173 39 0 chr13 45807763 45807815 -73937083 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 1914 158 39 6 chr13 45807851 45808187 -73936711 - MER7A DNA MER2_type -1 345 1 270 0 0 0 chr13 45808240 45808270 -73936628 + (CA)n Simple_repeat Simple_repeat 2 31 0 303 208 14 28 chr13 45808939 45809011 -73935887 + L2 LINE L2 3197 3267 -46 7362 39 0 2 chr13 45809978 45811245 -73933653 - L1PA4 LINE L1 0 6155 4890 422 274 32 54 chr13 45811592 45811778 -73933120 - LTR16C LTR ERVL -90 401 220 294 230 48 32 chr13 45811785 45811911 -73932987 + L1MEd LINE L1 41 168 -5951 2158 131 0 0 chr13 45812033 45812345 -73932553 + AluSx SINE Alu 1 312 0 570 173 30 18 chr13 45812350 45812518 -73932380 + GA-rich Low_complexity Low_complexity 2 171 0 977 198 71 0 chr13 45813802 45814014 -73930884 + MSTB1 LTR MaLR 2 228 -198 1428 122 61 0 chr13 45814117 45814347 -73930551 + MSTB1 LTR MaLR 189 432 0 965 150 5 78 chr13 45814379 45814572 -73930326 + AluJb SINE Alu 1 179 -133 252 0 0 0 chr13 45814591 45814619 -73930279 + (A)n Simple_repeat Simple_repeat 1 28 0 215 286 77 22 chr13 45815148 45815239 -73929659 + L2 LINE L2 1702 1797 -1517 529 292 25 0 chr13 45815246 45815366 -73929532 + L2 LINE L2 3191 3313 0 338 354 193 17 chr13 45815387 45816164 -73928734 + L2 LINE L2 1853 2766 -548 1707 160 24 3 chr13 45816633 45816921 -73927977 + MLT2B3 LTR ERVL 1 294 -260 1437 155 4 69 chr13 45817013 45817290 -73927608 + MLT2B3 LTR ERVL 294 552 -2 537 308 133 0 chr13 45817290 45817501 -73927397 - MIR SINE MIR -19 243 5 231 213 27 40 chr13 45817573 45817648 -73927250 - MIR SINE MIR -54 208 135 2112 101 42 0 chr13 45818028 45818315 -73926583 - AluSx SINE Alu -13 299 1 1710 162 17 30 chr13 45818556 45818858 -73926040 - AluJo SINE Alu -14 298 1 396 0 0 0 chr13 45819178 45819222 -73925676 + (CA)n Simple_repeat Simple_repeat 1 44 0 370 188 38 45 chr13 45819841 45819974 -73924924 - Charlie7 DNA MER1_type -54 2558 2427 231 217 157 24 chr13 45819958 45820041 -73924857 - Charlie7 DNA MER1_type -2511 101 8 * 676 272 171 9 chr13 45820809 45821369 -73923529 - L1M4 LINE L1 -1227 4919 4258 2396 97 0 0 chr13 45821739 45822047 -73922851 - AluSg SINE Alu -2 308 1 1916 134 22 0 chr13 45822299 45822574 -73922324 - AluSx SINE Alu -31 281 1 1055 278 107 51 chr13 45822790 45823720 -73921178 - L1ME3A LINE L1 -11 6159 5176 831 194 90 93 chr13 45824196 45824506 -73920392 + MLT2C1 LTR ERVL 24 332 -65 29 0 0 0 chr13 45824507 45824536 -73920362 + AT_rich Low_complexity Low_complexity 1 29 0 3056 41 0 23 chr13 45824536 45824926 -73919972 - L1PA5 LINE L1 -11 6143 5763 225 191 0 0 chr13 45824957 45825004 -73919894 + MLT2F LTR ERVL 607 653 -10 27 49 0 0 chr13 45825240 45825281 -73919617 + AT_rich Low_complexity Low_complexity 1 41 0 260 273 114 11 chr13 45825587 45825675 -73919223 + MIR SINE MIR 42 138 -70 299 292 22 22 chr13 45825723 45825812 -73919086 - L2 LINE L2 -42 3230 3142 4174 93 27 36 chr13 45827175 45827439 -73917459 - L1PA11 LINE L1 0 6174 5909 2218 87 21 0 chr13 45827439 45827726 -73917172 - AluY SINE Alu -18 293 1 4174 93 27 36 chr13 45827726 45828098 -73916800 - L1PA11 LINE L1 -265 5909 5544 234 238 88 38 chr13 45829542 45829622 -73915276 - L2 LINE L2 -4 3268 3185 22 0 0 0 chr13 45829965 45829987 -73914911 + AT_rich Low_complexity Low_complexity 1 22 0 565 258 33 39 chr13 45831207 45831389 -73913509 + MIR SINE MIR 32 212 -50 21 0 0 0 chr13 45831549 45831570 -73913328 + AT_rich Low_complexity Low_complexity 1 21 0 846 147 6 38 chr13 45834118 45834275 -73910623 + MER46A DNA MER2_type 1 152 -84 21 36 0 0 chr13 45834343 45834371 -73910527 + AT_rich Low_complexity Low_complexity 1 28 0 354 66 75 9 chr13 45834450 45834556 -73910342 + (TA)n Simple_repeat Simple_repeat 2 114 0 477 290 75 28 chr13 45836557 45836812 -73908086 + L1ME LINE L1 5552 5818 -303 551 266 81 12 chr13 45837637 45837810 -73907088 + MLT1I LTR MaLR 18 202 -207 234 279 154 0 chr13 45838141 45838342 -73906556 - L1M4 LINE L1 -1532 4614 4383 249 239 62 80 chr13 45838737 45838850 -73906048 + MIR SINE MIR 98 208 -54 1308 170 0 0 chr13 45839122 45839340 -73905558 + L1PA16 LINE L1 5940 6157 -9 442 286 84 0 chr13 45839578 45839756 -73905142 - MER46C DNA MER2_type -19 319 127 665 161 34 0 chr13 45840032 45840191 -73904707 - L1M4 LINE L1 -401 5777 5610 376 229 236 14 chr13 45840700 45840844 -73904054 + MIR3 SINE MIR 30 205 -3 754 234 130 29 chr13 45842571 45842947 -73901951 - HAL1 LINE L1 -69 2438 2025 311 148 33 0 chr13 45843272 45843333 -73901565 + L1MB1 LINE L1 6105 6167 -1 675 216 111 33 chr13 45843669 45843850 -73901048 + MER3 DNA MER1_type 1 195 -14 1525 228 172 27 chr13 45843895 45844559 -73900339 - HAL1 LINE L1 -690 1817 1046 2032 114 0 84 chr13 45844559 45844891 -73900007 - AluSq SINE Alu -9 304 1 1525 228 172 27 chr13 45844891 45844923 -73899975 - HAL1 LINE L1 -1461 1046 1020 882 288 97 4 chr13 45844974 45845241 -73899657 - HAL1 LINE L1 -1626 881 590 1227 276 100 32 chr13 45845243 45845773 -73899125 - HAL1 LINE L1 -1941 566 1 327 217 29 0 chr13 45847260 45847329 -73897569 - MIR SINE MIR -190 72 2 21 36 0 0 chr13 45847570 45847598 -73897300 + AT_rich Low_complexity Low_complexity 1 28 0 246 32 0 0 chr13 45848908 45848939 -73895959 + (CAA)n Simple_repeat Simple_repeat 2 32 0 810 214 20 25 chr13 45849080 45849276 -73895622 - AluJo SINE Alu -12 300 106 428 118 26 0 chr13 45850120 45850196 -73894702 - L1MB2 LINE L1 -7 6164 6087 1167 142 55 18 chr13 45850491 45850710 -73894188 - AluJb SINE Alu -5 307 81 22 0 0 0 chr13 45850770 45850792 -73894106 + AT_rich Low_complexity Low_complexity 1 22 0 202 253 38 38 chr13 45850799 45850878 -73894020 + L2 LINE L2 2770 2848 -466 778 241 65 28 chr13 45850957 45851173 -73893725 + MIR SINE MIR 9 232 -30 241 242 15 0 chr13 45852705 45852771 -73892127 + MER45A DNA AcHobo 104 170 -8 26 50 0 0 chr13 45853294 45853334 -73891564 + AT_rich Low_complexity Low_complexity 1 40 0 1248 220 16 35 chr13 45853610 45853923 -73890975 - MLT1A1 LTR MaLR -58 307 1 1069 147 17 97 chr13 45854036 45854274 -73890624 - MER20 DNA MER1_type 0 219 1 2093 139 0 0 chr13 45854679 45854980 -73889918 - AluJo SINE Alu 0 301 1 441 0 0 0 chr13 45855964 45856013 -73888885 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 1965 180 12 0 chr13 45856013 45856357 -73888541 - MER7A DNA MER2_type 0 346 1 198 143 0 77 chr13 45856379 45856423 -73888475 - L2 LINE L2 -15 3298 3219 389 330 42 50 chr13 45856475 45856736 -73888162 + L2 LINE L2 2841 3099 -173 791 188 3 6 chr13 45856884 45857173 -73887725 + MLT1A1 LTR MaLR 1 365 0 599 206 143 71 chr13 45857676 45858055 -73886843 - MLT1H1 LTR MaLR 0 555 150 1700 161 93 19 chr13 45858061 45858772 -73886126 - MER21A LTR ERV1 -6 925 1 380 264 16 32 chr13 45858772 45858896 -73886002 - MLT1H1 LTR MaLR -404 151 37 277 151 2 17 chr13 45858952 45859019 -73885879 - L1MC1 LINE L1 -9 6324 6266 339 160 0 46 chr13 45859039 45859126 -73885772 - L1MC1 LINE L1 -302 5819 5752 1809 219 147 6 chr13 45859139 45859641 -73885257 - MLT1G LTR MaLR -17 573 1 258 234 44 102 chr13 45859647 45859704 -73885194 - L1MC1 LINE L1 -2059 5749 5690 2219 102 159 8 chr13 45859704 45860076 -73884822 + MSTA LTR MaLR 1 428 0 258 234 44 102 chr13 45860076 45860155 -73884743 - L1MC1 LINE L1 -2118 5690 5621 287 328 0 0 chr13 45860168 45860287 -73884611 - L1MC1 LINE L1 -470 5651 5533 2347 114 0 0 chr13 45860350 45860656 -73884242 - AluSg SINE Alu -2 308 3 2290 88 3 0 chr13 45860660 45860943 -73883955 - AluSq SINE Alu -29 284 1 266 274 14 0 chr13 45862201 45862274 -73882624 + AluYa8 SINE Alu 131 204 -96 210 37 0 0 chr13 45864133 45864160 -73880738 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 512 259 119 49 chr13 45864353 45864697 -73880201 - L1ME4a LINE L1 -11 6110 5743 511 201 34 20 chr13 45864745 45864894 -73880004 - L1MC5 LINE L1 -101 7860 7710 411 286 28 11 chr13 45865062 45865259 -73879639 - L1MEc LINE L1 -5307 1721 1375 468 325 52 11 chr13 45865651 45865919 -73878979 - L1MEc LINE L1 -5989 1149 871 1278 225 66 16 chr13 45866041 45866543 -73878355 - L1ME1 LINE L1 -5 6161 5506 21 0 0 0 chr13 45866883 45866904 -73877994 + AT_rich Low_complexity Low_complexity 1 21 0 1459 277 80 22 chr13 45867150 45867875 -73877023 + L1MC4a LINE L1 5260 6026 -1782 316 278 19 0 chr13 45868688 45868796 -73876102 + L1M4 LINE L1 4549 4658 -1488 3469 174 27 6 chr13 45869498 45870019 -73874879 - LTR51 LTR ERV1 0 671 132 180 0 0 0 chr13 45870019 45870039 -73874859 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3469 174 27 6 chr13 45870039 45870174 -73874724 - LTR51 LTR ERV1 -539 132 1 228 59 0 0 chr13 45870507 45870541 -73874357 - MLT1D LTR MaLR 0 626 593 4449 135 88 40 chr13 45870542 45871610 -73873288 + MER52C LTR ERV1 1 1278 0 677 171 16 0 chr13 45871610 45871732 -73873166 - MLT1D LTR MaLR -34 471 348 841 261 193 20 chr13 45871733 45872127 -73872771 - L2 LINE L2 -381 2933 2472 279 78 47 31 chr13 45872145 45872209 -73872689 + GA-rich Low_complexity Low_complexity 5 69 0 558 241 0 0 chr13 45872757 45872902 -73871996 + (TA)n Simple_repeat Simple_repeat 2 146 0 359 338 48 28 chr13 45872962 45873107 -73871791 + L2 LINE L2 3125 3272 0 352 315 19 49 chr13 45873137 45873299 -73871599 + MER5A DNA MER1_type 4 160 -29 205 247 68 123 chr13 45873172 45873334 -73871564 - MER5A DNA MER1_type -27 162 10 * 263 253 40 0 chr13 45874604 45874679 -73870219 + MER103 DNA DNA 43 120 -46 941 176 0 35 chr13 45874699 45874898 -73870000 - L1MA9 LINE L1 0 6312 6121 362 301 158 5 chr13 45875185 45875394 -73869504 - MIR SINE MIR -2 260 20 312 27 0 0 chr13 45876030 45876067 -73868831 + (TG)n Simple_repeat Simple_repeat 2 38 0 496 268 163 21 chr13 45877448 45877658 -73867240 + MIR SINE MIR 15 249 -13 195 170 0 0 chr13 45877690 45877737 -73867161 + (TTG)n Simple_repeat Simple_repeat 1 47 0 618 235 8 15 chr13 45877749 45877881 -73867017 + MER58A DNA MER1_type 1 131 0 229 250 0 0 chr13 45877881 45877930 -73866968 + MER58A DNA MER1_type 172 220 -4 185 260 228 63 chr13 45880353 45880480 -73864418 - MIR3 SINE MIR -23 185 38 2271 101 0 7 chr13 45880599 45880905 -73863993 + AluSg SINE Alu 1 304 -6 298 354 0 0 chr13 45881729 45881825 -73863073 - MIR SINE MIR -117 145 50 661 313 48 10 chr13 45881890 45882098 -73862800 + MIR SINE MIR 31 246 -16 2041 102 0 3 chr13 45884102 45884415 -73860483 - L1P3 LINE L1 -503 5651 5340 309 295 13 0 chr13 45884415 45884493 -73860405 - MIR SINE MIR -182 80 2 27 0 0 0 chr13 45884629 45884656 -73860242 + AT_rich Low_complexity Low_complexity 1 27 0 471 261 35 26 chr13 45884746 45884861 -73860037 - L2 LINE L2 0 3313 3198 1721 158 10 43 chr13 45884861 45885165 -73859733 - AluJo SINE Alu -7 305 12 293 224 92 92 chr13 45885230 45885404 -73859494 - MIR SINE MIR -56 206 33 2462 49 0 3 chr13 45885701 45886005 -73858893 + AluY SINE Alu 1 303 -8 192 40 0 0 chr13 45886846 45886871 -73858027 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1181 193 5 23 chr13 45886871 45887089 -73857809 - AluJb SINE Alu -32 280 67 2141 264 39 62 chr13 45887106 45888480 -73856418 - L1MEc LINE L1 -4100 2296 955 233 111 67 0 chr13 45888654 45888699 -73856199 - L1MC5 LINE L1 -311 7650 7603 303 352 88 11 chr13 45890049 45890231 -73854667 + MIR SINE MIR 41 236 -26 357 24 0 0 chr13 45890766 45890808 -73854090 + (CA)n Simple_repeat Simple_repeat 2 43 0 349 384 0 0 chr13 45892345 45892457 -73852441 - MIR SINE MIR -63 145 34 2165 112 41 22 chr13 45892677 45893044 -73851854 + THE1C LTR MaLR 1 374 -1 423 261 11 0 chr13 45893249 45893337 -73851561 - MER5B DNA MER1_type -1 177 89 409 214 9 9 chr13 45893797 45893909 -73850989 + L1MA7 LINE L1 6178 6289 -2 2960 180 22 2 chr13 45894660 45895199 -73849699 + MER44D DNA MER2_type 1 605 0 421 259 118 15 chr13 45896492 45896627 -73848271 + MIR SINE MIR 3 151 -111 253 253 36 0 chr13 45896823 45896906 -73847992 - L1MC5 LINE L1 -36 7925 7840 204 40 0 0 chr13 45897441 45897466 -73847432 + (A)n Simple_repeat Simple_repeat 1 25 0 456 215 37 0 chr13 45897525 45897632 -73847266 - Charlie1b DNA MER1_type -319 204 94 1083 143 63 49 chr13 45897636 45897859 -73847039 + MER7A DNA MER2_type 2 225 -121 199 283 111 30 chr13 45897951 45898050 -73846848 + MIR SINE MIR 86 192 -70 252 302 0 0 chr13 45898841 45898904 -73845994 - LTR67 LTR ERVL -390 167 105 228 136 0 45 chr13 45899326 45899370 -73845528 - Charlie8 DNA MER1_type -2342 75 34 420 307 95 5 chr13 45900298 45900487 -73844411 - MIR SINE MIR -8 254 49 807 290 137 44 chr13 45900806 45901738 -73843160 + L2 LINE L2 2283 3312 -1 902 253 63 66 chr13 45902077 45902334 -73842564 - MIR SINE MIR -10 252 2 1525 216 34 78 chr13 45903588 45904116 -73840782 + MLT1D LTR MaLR 1 505 0 345 255 43 80 chr13 45904554 45904742 -73840156 - L1M4 LINE L1 -1476 4670 4490 590 226 67 6 chr13 45905232 45905396 -73839502 - MER5B DNA MER1_type 0 178 5 1705 175 91 32 chr13 45906601 45907042 -73837856 + MLT1C LTR MaLR 1 467 0 21 57 0 0 chr13 45907536 45907571 -73837327 + AT_rich Low_complexity Low_complexity 1 35 0 388 310 81 83 chr13 45908550 45908744 -73836154 - L2 LINE L2 0 3272 3078 1742 199 11 32 chr13 45908744 45908817 -73836081 - MLT1A1 LTR MaLR -2 363 290 2220 115 3 0 chr13 45908817 45909113 -73835785 + AluSc SINE Alu 1 297 -12 1742 199 11 32 chr13 45909113 45909410 -73835488 - MLT1A1 LTR MaLR -75 290 1 388 310 81 83 chr13 45909410 45909563 -73835335 - L2 LINE L2 -194 3078 2926 429 329 176 16 chr13 45909593 45910082 -73834816 - L2 LINE L2 -469 2845 2279 282 372 115 9 chr13 45910307 45910638 -73834260 - L2 LINE L2 -549 2765 2400 322 335 100 30 chr13 45911032 45911237 -73833661 + L2 LINE L2 2984 3218 -95 2301 100 108 8 chr13 45911237 45911626 -73833272 + MSTA LTR MaLR 1 428 0 322 335 100 30 chr13 45911626 45911721 -73833177 + L2 LINE L2 3218 3305 -8 2017 133 6 22 chr13 45915137 45915454 -73829444 + AluJo SINE Alu 1 312 0 4866 74 50 9 chr13 45915461 45916201 -73828697 + L1PA13 LINE L1 5375 6144 -19 2463 184 64 14 chr13 45916213 45916788 -73828110 + MER67C LTR ERV1 106 709 -1 666 227 66 10 chr13 45917358 45917556 -73827342 + MER3 DNA MER1_type 1 209 0 284 342 42 8 chr13 45918255 45918375 -73826523 + MIR SINE MIR 9 132 -130 712 263 115 48 chr13 45918378 45918542 -73826356 - L2 LINE L2 -3 3310 3158 2179 104 3 0 chr13 45918542 45918829 -73826069 + AluSq SINE Alu 1 288 -25 712 263 115 48 chr13 45918829 45918995 -73825903 - L2 LINE L2 -155 3158 2958 1008 231 140 20 chr13 45919340 45919690 -73825208 + LTR40b LTR ERVL 71 462 0 3610 179 61 16 chr13 45920836 45921876 -73823022 + L1MB4 LINE L1 5093 6177 -3 335 306 100 19 chr13 45922128 45922288 -73822610 + L1ME4a LINE L1 5756 5928 -193 873 90 135 0 chr13 45924701 45924834 -73820064 - AluSp SINE Alu -26 287 137 239 128 0 0 chr13 45925159 45925206 -73819692 - Charlie5 DNA MER1_type -121 2491 2445 333 0 0 0 chr13 45925225 45925262 -73819636 + (TTA)n Simple_repeat Simple_repeat 3 39 0 2361 39 3 0 chr13 45925262 45925545 -73819353 - L1PA3 LINE L1 -18 6137 5854 203 333 13 0 chr13 45926192 45926270 -73818628 + CT-rich Low_complexity Low_complexity 2 80 0 28 0 0 0 chr13 45927277 45927305 -73817593 + AT_rich Low_complexity Low_complexity 1 28 0 210 369 8 25 chr13 45927948 45928070 -73816828 + L2 LINE L2 2941 3060 -212 180 0 0 0 chr13 45928183 45928203 -73816695 + (TA)n Simple_repeat Simple_repeat 2 21 0 2459 65 0 23 chr13 45928203 45928513 -73816385 - AluY SINE Alu -8 303 1 1982 160 3 0 chr13 45931523 45931817 -73813081 + AluJb SINE Alu 3 297 -15 2240 115 0 0 chr13 45932354 45932659 -73812239 + AluSx SINE Alu 1 305 -7 409 296 210 18 chr13 45934157 45934495 -73810403 + L1M4 LINE L1 4860 5262 -884 760 232 18 0 chr13 45934691 45934855 -73810043 - MIR SINE MIR -84 178 12 400 75 0 0 chr13 45935961 45936014 -73808884 + AluY SINE Alu 1 53 -257 565 244 15 0 chr13 45936016 45936151 -73808747 - Tigger7 DNA MER2_type -596 137 1 1854 119 0 0 chr13 45936225 45936485 -73808413 + AluY SINE Alu 47 306 -5 217 238 0 0 chr13 45936595 45936637 -73808261 + (TATG)n Simple_repeat Simple_repeat 3 44 0 829 188 18 6 chr13 45936761 45936926 -73807972 - Tigger7 DNA MER2_type 0 2487 2321 1404 234 13 0 chr13 45936944 45937251 -73807647 - Tigger7 DNA MER2_type -2166 321 11 485 309 109 45 chr13 45937400 45937776 -73807122 - L1MC/D LINE L1 -2154 5654 5255 2482 56 0 13 chr13 45938935 45939238 -73805660 + AluY SINE Alu 1 299 -12 348 289 62 62 chr13 45939392 45939617 -73805281 + L1MEd LINE L1 937 1161 -5044 1918 69 35 0 chr13 45939622 45939882 -73805016 + L1PA11 LINE L1 5903 6171 -3 377 295 60 44 chr13 45939932 45940345 -73804553 + L1MEd LINE L1 1229 1648 -4748 627 234 151 26 chr13 45940544 45941108 -73803790 + L1MEd LINE L1 1940 2535 -3680 2239 85 3 0 chr13 45941863 45942146 -73802752 + AluSp SINE Alu 5 288 -25 249 167 372 26 chr13 45942636 45942714 -73802184 + MER5B DNA MER1_type 1 105 -73 219 400 83 0 chr13 45942848 45942993 -73801905 + MIR SINE MIR 18 172 -63 308 290 11 21 chr13 45943101 45943194 -73801704 + MIR SINE MIR 57 148 -114 765 216 33 22 chr13 45945064 45945245 -73799653 - MER5A DNA MER1_type -6 183 1 535 143 29 149 chr13 45945254 45945429 -73799469 + MER5B DNA MER1_type 2 155 -23 629 336 73 13 chr13 45950007 45950245 -73794653 + MIR SINE MIR 1 254 -8 562 261 122 21 chr13 45950559 45950747 -73794151 + MIR SINE MIR 56 262 0 282 184 356 0 chr13 45950854 45950941 -73793957 + L2 LINE L2 3196 3313 0 765 296 79 10 chr13 45951690 45952097 -73792801 + LTR16A LTR ERVL 16 449 -1 454 250 8 8 chr13 45952536 45952664 -73792234 - MER103 DNA DNA -1 165 38 524 255 7 0 chr13 45952713 45952862 -73792036 - L1ME2 LINE L1 -7 6157 6008 306 292 115 0 chr13 45953439 45953535 -73791363 - L2 LINE L2 0 3313 3207 * 1346 261 77 11 chr13 45953526 45953979 -73790919 - L2 LINE L2 -985 2329 1847 1815 280 77 20 chr13 45953980 45954641 -73790257 - L2 LINE L2 -641 2673 1975 28 48 0 0 chr13 45954900 45954942 -73789956 + AT_rich Low_complexity Low_complexity 1 42 0 485 294 132 51 chr13 45955050 45955482 -73789416 - MLT1K LTR MaLR 0 588 122 224 292 69 42 chr13 45957337 45957481 -73787417 + L3 LINE CR1 1424 1571 -6 21 36 0 0 chr13 45957653 45957681 -73787217 + AT_rich Low_complexity Low_complexity 1 28 0 226 204 0 0 chr13 45957832 45957876 -73787022 - L1M1 LINE L1 -739 5561 5518 1047 271 68 39 chr13 45958448 45959020 -73785878 - HAL1b LINE L1 -512 836 248 1891 149 7 3 chr13 45959091 45959380 -73785518 - AluSx SINE Alu -22 290 1 201 208 21 0 chr13 45959818 45959866 -73785032 + T-rich Low_complexity Low_complexity 1 49 0 198 71 0 0 chr13 45959947 45959975 -73784923 + (TG)n Simple_repeat Simple_repeat 1 28 0 807 181 96 11 chr13 45959976 45960153 -73784745 - L1PB4 LINE L1 -1 6155 5964 2339 112 3 0 chr13 45960668 45961007 -73783891 - L1PB3 LINE L1 -3 6151 5812 783 273 32 9 chr13 45961391 45961607 -73783291 + MER58A DNA MER1_type 2 222 -2 189 318 57 57 chr13 45963050 45963138 -73781760 - MIR SINE MIR -19 243 156 1871 190 77 31 chr13 45963360 45963882 -73781016 - L1ME3A LINE L1 -1 6169 5624 237 235 18 127 chr13 45963945 45964026 -73780872 + MER5B DNA MER1_type 31 87 -91 1811 194 132 14 chr13 45964026 45964459 -73780439 - MER66B LTR ERV1 0 486 3 237 235 18 127 chr13 45964459 45964543 -73780355 + MER5B DNA MER1_type 87 178 0 3065 29 0 13 chr13 45964680 45965054 -73779844 - L1PA4 LINE L1 -2 6153 5785 422 276 152 0 chr13 45965414 45965559 -73779339 + MIR SINE MIR 84 250 -12 1048 209 0 15 chr13 45966168 45966369 -73778529 - AluJo SINE Alu -32 280 83 2651 142 85 6 chr13 45967323 45967843 -73777055 - L1MC1 LINE L1 0 6333 5773 2243 228 83 40 chr13 45967874 45968911 -73775987 - L1MDa LINE L1 -1889 4651 3571 * 4970 165 35 13 chr13 45968904 45970278 -73774620 - L1PA16 LINE L1 0 6166 4752 2303 88 0 26 chr13 45970278 45970586 -73774312 - AluY SINE Alu -11 300 1 4970 165 35 13 chr13 45970586 45970872 -73774026 - L1PA16 LINE L1 -1414 4752 4474 4884 217 21 49 chr13 45970846 45972473 -73772425 - L1MDa LINE L1 -2385 4155 2574 * 2387 84 0 10 chr13 45972473 45972783 -73772115 - AluY SINE Alu -4 307 1 650 156 66 25 chr13 45972802 45972924 -73771974 + Charlie3 DNA MER1_type 1 127 -2583 478 181 71 0 chr13 45972926 45973081 -73771817 - L1MDa LINE L1 -3949 2591 2426 318 186 0 0 chr13 45973081 45973140 -73771758 - AluJb SINE Alu -4 297 239 * 331 125 0 111 chr13 45973139 45973211 -73771687 - AluJb SINE Alu -155 147 84 1303 161 99 3 chr13 45973211 45973534 -73771364 - L1MDa LINE L1 -4106 2434 2081 1202 244 32 21 chr13 45973598 45974029 -73770869 - L1MDa LINE L1 -3126 3414 2979 5578 200 109 61 chr13 45974032 45975081 -73769817 - L1MDa LINE L1 -4527 2013 831 1930 129 60 60 chr13 45975081 45975445 -73769453 + THE1B LTR MaLR 1 364 0 5578 200 109 61 chr13 45975445 45976299 -73768599 - L1MDa LINE L1 -5709 831 19 2222 113 12 134 chr13 45976514 45977020 -73767878 + MLT2A1 LTR ERVL 1 444 0 24 77 0 0 chr13 45977184 45977236 -73767662 + AT_rich Low_complexity Low_complexity 1 52 0 2707 279 130 32 chr13 45977624 45979212 -73765686 - L2 LINE L2 -2 3311 1564 182 173 0 19 chr13 45979235 45979287 -73765611 + A-rich Low_complexity Low_complexity 2 52 0 2099 127 3 3 chr13 45979598 45979897 -73765001 + AluSg SINE Alu 1 299 -11 400 262 10 0 chr13 45980086 45980189 -73764709 + MLT1K LTR MaLR 484 587 -1 21 0 0 0 chr13 45980206 45980227 -73764671 + AT_rich Low_complexity Low_complexity 1 21 0 2013 107 64 0 chr13 45980278 45980559 -73764339 + AluSx SINE Alu 5 303 -9 776 240 6 6 chr13 45981582 45981761 -73763137 + MLT1A2 LTR MaLR 194 372 -2 795 251 122 43 chr13 45981767 45982161 -73762737 - L1MDb LINE L1 -5212 1197 773 4231 174 51 10 chr13 45982257 45983422 -73761476 - L1MB1 LINE L1 -1 6167 4951 816 237 61 5 chr13 45983827 45984025 -73760873 - MER58A DNA MER1_type -15 209 1 1778 110 15 157 chr13 45984119 45984520 -73760378 - LTR14B LTR ERVK 0 608 1 216 271 0 34 chr13 45985498 45985557 -73759341 + GA-rich Low_complexity Low_complexity 4 60 0 30 0 0 0 chr13 45985597 45985627 -73759271 + AT_rich Low_complexity Low_complexity 1 30 0 245 127 18 55 chr13 45985631 45985686 -73759212 - MER4D LTR ERV1 0 903 851 15796 129 53 138 chr13 45985688 45986813 -73758085 + L1MA3 LINE L1 17 1237 -6328 4221 137 19 88 chr13 45986813 45987696 -73757202 - LTR12 LTR ERV1 0 826 5 15796 129 53 138 chr13 45987696 45989589 -73755309 + L1MA3 LINE L1 1237 3291 -4274 180 0 0 0 chr13 45989589 45989609 -73755289 + (TG)n Simple_repeat Simple_repeat 1 20 0 15796 129 53 138 chr13 45989609 45990686 -73754212 + L1MA3 LINE L1 3291 3695 -3870 2418 73 0 7 chr13 45990686 45990986 -73753912 + AluY SINE Alu 1 298 -13 15796 129 53 138 chr13 45990986 45991439 -73753459 + L1MA3 LINE L1 3695 4185 -3380 1311 114 0 114 chr13 45991439 45991667 -73753231 + AluSg/x SINE Alu 82 283 -29 6509 177 30 48 chr13 45991692 45993352 -73751546 + L1MA3 LINE L1 4195 5824 -1741 541 182 91 0 chr13 45993388 45993509 -73751389 + L1MA3 LINE L1 7311 7442 -282 6798 57 11 0 chr13 45993530 45994927 -73749971 + L1PA7 LINE L1 4737 6152 -2 1209 147 56 4 chr13 45994981 45995232 -73749666 + L1MA3 LINE L1 7461 7724 0 2981 131 25 21 chr13 45995256 45995548 -73749350 + MER75 DNA T2_type 1 290 -224 1987 144 39 36 chr13 45995548 45995909 -73748989 - THE1B LTR MaLR 0 364 3 10612 104 24 37 chr13 45995911 45997511 -73747387 - THE1B-int LTR MaLR 0 1580 2 1985 128 60 28 chr13 45997512 45997865 -73747033 - THE1B LTR MaLR 0 364 1 2981 131 25 21 chr13 45997865 45998078 -73746820 + MER75 DNA T2_type 289 513 -1 1196 246 24 27 chr13 45998085 45998196 -73746702 - MER4D LTR ERV1 -36 867 757 3372 126 73 9 chr13 45998196 45998769 -73746129 + MER4B LTR ERV1 1 610 0 1196 246 24 27 chr13 45998769 45998987 -73745911 - MER4D LTR ERV1 -146 757 539 1875 195 73 47 chr13 45998990 45999686 -73745212 - LTR49 LTR ERV1 -23 572 20 1004 273 16 4 chr13 45999776 46000025 -73744873 + MIR SINE MIR 6 257 -5 1739 258 60 22 chr13 46000653 46001263 -73743635 + MER21B LTR ERV1 126 855 -76 253 297 167 36 chr13 46001543 46001681 -73743217 - L2 LINE L2 0 3313 3158 2239 120 13 0 chr13 46003419 46003728 -73741170 + AluSq SINE Alu 1 313 0 1344 278 35 51 chr13 46003761 46004605 -73740293 + L1MC4 LINE L1 7212 8042 0 24 0 0 0 chr13 46004671 46004695 -73740203 + AT_rich Low_complexity Low_complexity 1 24 0 2308 101 10 0 chr13 46005372 46005679 -73739219 + AluSg SINE Alu 1 310 0 241 215 69 169 chr13 46005787 46005917 -73738981 - L1ME3 LINE L1 -88 6074 5958 383 149 14 0 chr13 46005997 46006071 -73738827 + (TA)n Simple_repeat Simple_repeat 1 75 0 1445 239 114 42 chr13 46006121 46006952 -73737946 - L1MC5 LINE L1 -438 7523 6633 276 331 122 9 chr13 46007315 46007750 -73737148 - HAL1b LINE L1 -588 760 277 2998 166 40 26 chr13 46007993 46008612 -73736286 - L1MC1 LINE L1 0 6333 5706 1252 127 15 0 chr13 46008619 46008824 -73736074 - L1MC1 LINE L1 -693 5640 5433 604 194 219 12 chr13 46008842 46009002 -73735896 - 7SK RNA RNA 0 193 1 308 259 35 0 chr13 46009284 46009369 -73735529 + MIR SINE MIR 66 153 -109 2100 121 0 0 chr13 46010370 46010652 -73734246 + AluSx SINE Alu 1 282 -30 205 211 0 0 chr13 46010666 46010704 -73734194 + (TA)n Simple_repeat Simple_repeat 1 38 0 263 225 27 88 chr13 46011379 46011566 -73733332 + L1MC3 LINE L1 6708 6771 -1014 783 184 0 22 chr13 46011603 46011739 -73733159 + FLAM_C SINE Alu 1 133 0 1048 115 204 0 chr13 46012213 46012404 -73732494 - MER30 DNA MER1_type 0 230 1 2207 105 3 3 chr13 46012462 46012767 -73732131 + AluSx SINE Alu 1 305 -7 541 213 71 38 chr13 46014325 46014508 -73730390 + LTR50 LTR ERVL 15 203 -592 451 309 57 17 chr13 46014519 46014694 -73730204 - MIR SINE MIR -80 182 1 688 300 50 0 chr13 46014794 46014994 -73729904 - MER63A DNA MER1_type 0 210 1 378 240 145 0 chr13 46015652 46015831 -73729067 - LTR40c LTR ERVL -106 359 155 429 315 21 0 chr13 46016052 46016195 -73728703 - HERVL40 LTR ERVL -138 5392 5247 2030 264 22 52 chr13 46016559 46017252 -73727646 - HERVL40 LTR ERVL -356 5174 4503 330 357 18 4 chr13 46017716 46017943 -73726955 - HERVL40 LTR ERVL -1545 3985 3756 2620 56 0 0 chr13 46018378 46018681 -73726217 + AluY SINE Alu 1 303 -8 429 268 81 30 chr13 46019315 46019550 -73725348 - LTR40c LTR ERVL -50 415 169 2096 101 21 3 chr13 46020957 46021122 -73723776 - AluSg SINE Alu -18 292 118 477 0 0 0 chr13 46021122 46021175 -73723723 + (TG)n Simple_repeat Simple_repeat 2 54 0 2096 101 21 3 chr13 46021175 46021296 -73723602 - AluSg SINE Alu -192 118 1 357 269 160 32 chr13 46022348 46022477 -73722421 + L1ME4a LINE L1 5666 5777 -344 2147 114 3 3 chr13 46022477 46022766 -73722132 + AluSx SINE Alu 1 289 -23 213 65 0 0 chr13 46022766 46022797 -73722101 + (TA)n Simple_repeat Simple_repeat 1 31 0 357 269 160 32 chr13 46022797 46022885 -73722013 + L1ME4a LINE L1 5776 5912 -209 327 157 0 0 chr13 46023195 46023265 -73721633 + (TA)n Simple_repeat Simple_repeat 1 70 0 1712 172 59 3 chr13 46023268 46023606 -73721292 - MLT2C1 LTR ERVL -40 357 1 272 341 71 56 chr13 46023740 46023992 -73720906 + L2 LINE L2 2722 2977 -337 1013 317 38 31 chr13 46025136 46025740 -73719158 + L1MB1 LINE L1 416 922 -5381 2460 240 149 23 chr13 46025910 46026115 -73718783 + L1MB1 LINE L1 800 978 -5404 2474 72 0 3 chr13 46026115 46026422 -73718476 + AluY SINE Alu 1 306 -5 2460 240 149 23 chr13 46026422 46027283 -73717615 + L1MB1 LINE L1 978 1730 -4652 1437 113 13 22 chr13 46027283 46027513 -73717385 + L1PA10 LINE L1 5929 6156 -12 2460 240 149 23 chr13 46027513 46027715 -73717183 + L1MB1 LINE L1 1730 1905 -4477 1900 113 59 48 chr13 46027715 46028086 -73716812 + THE1C LTR MaLR 1 375 0 2460 240 149 23 chr13 46028086 46028487 -73716411 + L1MB1 LINE L1 1905 2561 -3821 4516 166 43 15 chr13 46028497 46029529 -73715369 - L1MA7 LINE L1 -31 6260 5207 1096 228 50 0 chr13 46029529 46029906 -73714992 + L1MB1 LINE L1 3101 3496 -2886 3391 22 7 0 chr13 46030026 46030438 -73714460 - L1P2 LINE L1 -335 5819 5405 2387 99 0 0 chr13 46030440 46030773 -73714125 - THE1C LTR MaLR -42 333 1 6235 190 55 76 chr13 46030773 46032770 -73712128 + L1MB1 LINE L1 3572 5526 -856 2793 200 84 10 chr13 46032771 46033487 -73711411 + L1MB1 LINE L1 5628 6396 -8 2246 132 11 11 chr13 46033723 46034103 -73710795 - L1MC1 LINE L1 -17 6316 5937 225 139 0 0 chr13 46035871 46035907 -73708991 - Alu SINE Alu -8 292 257 2148 117 7 0 chr13 46035949 46036240 -73708658 - AluSx SINE Alu -18 294 2 385 313 172 12 chr13 46037218 46037381 -73707517 - MER5A DNA MER1_type 0 189 1 1947 148 21 0 chr13 46037426 46037717 -73707181 - AluSx SINE Alu -15 297 1 1203 153 76 8 chr13 46037822 46038071 -73706827 - L1MA9 LINE L1 -2 6310 6045 1179 170 60 0 chr13 46038391 46038626 -73706272 - L1MC2 LINE L1 -490 5854 5606 387 232 67 89 chr13 46038639 46038863 -73706035 - MLT1I LTR MaLR -62 347 129 2461 155 23 46 chr13 46039914 46040067 -73704831 + MLT1C LTR MaLR 1 156 -311 2228 115 0 0 chr13 46040067 46040362 -73704536 - AluSc SINE Alu -14 295 1 2461 155 23 46 chr13 46040362 46040686 -73704212 + MLT1C LTR MaLR 156 467 0 314 235 182 8 chr13 46040873 46041005 -73703893 - MLT1I LTR MaLR -5 404 250 1384 227 48 23 chr13 46041175 46041527 -73703371 - MLT1A1 LTR MaLR 0 365 5 366 306 272 18 chr13 46041625 46042095 -73702803 - L2 LINE L2 -2 3311 2736 386 234 65 16 chr13 46042103 46042227 -73702671 - LTR16A LTR ERVL -320 130 1 677 288 40 18 chr13 46043513 46043735 -73701163 + MIR SINE MIR 10 236 -26 317 231 91 74 chr13 46043844 46043965 -73700933 - MIR SINE MIR -70 138 16 26 0 0 0 chr13 46044526 46044552 -73700346 + AT_rich Low_complexity Low_complexity 1 26 0 3991 114 71 6 chr13 46044552 46045212 -73699686 - L1PA16 LINE L1 -20 6146 5444 2413 100 120 15 chr13 46046558 46047006 -73697892 - Tigger3(Golem) DNA MER2_type -136 2893 2395 568 118 11 0 chr13 46047006 46047099 -73697799 - L1PA8 LINE L1 -2 6170 6077 4188 154 80 13 chr13 46048796 46049570 -73695328 - LTR1B LTR ERV1 0 826 1 2101 146 52 3 chr13 46049876 46050245 -73694653 + MLT1B LTR MaLR 1 387 -3 275 276 0 0 chr13 46052707 46052783 -73692115 + MIR SINE MIR 78 153 -109 2138 113 3 29 chr13 46053332 46053641 -73691257 + AluSx SINE Alu 1 301 -11 188 167 21 0 chr13 46054402 46054450 -73690448 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1681 159 4 0 chr13 46054457 46054734 -73690164 - L1PB4 LINE L1 -13 6143 5866 300 286 92 17 chr13 46056330 46056449 -73688449 - L2 LINE L2 -557 2757 2630 1411 190 80 3 chr13 46056464 46056789 -73688109 + AluJo SINE Alu 1 347 0 435 38 0 0 chr13 46057566 46057619 -73687279 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 400 289 61 9 chr13 46057620 46057734 -73687164 - L2 LINE L2 -14 3299 3180 666 154 7 59 chr13 46057849 46057985 -73686913 - FLAM_A SINE Alu -3 130 2 1742 172 123 0 chr13 46058405 46058731 -73686167 + MER47A DNA MER2_type 1 366 0 422 332 142 0 chr13 46059066 46059277 -73685621 - MIR SINE MIR -17 245 5 29 0 0 0 chr13 46059311 46059340 -73685558 + AT_rich Low_complexity Low_complexity 1 29 0 633 271 62 56 chr13 46059641 46059999 -73684899 + L1ME2 LINE L1 49 408 -6015 932 267 81 65 chr13 46060058 46060735 -73684163 + L1ME2 LINE L1 2080 2767 -4355 3777 239 88 70 chr13 46060797 46062280 -73682618 + L1ME2 LINE L1 3760 5294 -1647 2215 113 0 7 chr13 46062280 46062582 -73682316 + AluSx SINE Alu 1 300 -12 3777 239 88 70 chr13 46062582 46063214 -73681684 + L1ME2 LINE L1 5294 5913 -1028 1816 221 81 25 chr13 46063524 46064421 -73680477 + L1ME2 LINE L1 5967 6958 -1 233 220 30 10 chr13 46065049 46065149 -73679749 + GA-rich Low_complexity Low_complexity 4 105 0 4922 73 30 0 chr13 46065193 46065834 -73679064 - PABL_A LTR ERV1 0 660 1 562 227 144 25 chr13 46066127 46066405 -73678493 + LTR50 LTR ERVL 481 791 -4 742 263 25 48 chr13 46067052 46067306 -73677592 + MIR SINE MIR 10 252 -10 298 333 67 86 chr13 46067325 46067592 -73677306 + L2 LINE L2 3011 3272 0 1743 125 88 25 chr13 46067937 46068290 -73676608 + THE1C LTR MaLR 1 375 0 10792 22 0 0 chr13 46069319 46071339 -73673559 - L1PA3 LINE L1 -5 6150 4131 2066 239 126 11 chr13 46071723 46072255 -73672643 + MLT1E LTR MaLR 1 593 0 195 338 14 0 chr13 46072962 46073036 -73671862 - MIR SINE MIR -96 166 92 1553 170 26 51 chr13 46073320 46073709 -73671189 + L1MD2 LINE L1 5281 5659 -700 2266 190 91 18 chr13 46073713 46074228 -73670670 + L1MD2 LINE L1 5804 6356 -3 193 269 96 0 chr13 46074267 46074319 -73670579 - L2 LINE L2 -7 3265 3209 303 277 146 8 chr13 46077330 46077460 -73667438 + MIR SINE MIR 21 168 -94 914 190 6 11 chr13 46077821 46078000 -73666898 + MER5B DNA MER1_type 1 178 0 331 292 47 44 chr13 46078231 46078368 -73666530 - MIR3 SINE MIR -41 167 31 1865 201 57 55 chr13 46078771 46079284 -73665614 - MER67D LTR ERV1 0 514 1 531 267 11 61 chr13 46079433 46079613 -73665285 - MER5B DNA MER1_type -4 174 4 213 362 24 24 chr13 46079622 46079749 -73665149 - MIR SINE MIR -57 151 25 215 214 71 0 chr13 46079916 46079972 -73664926 + MIR SINE MIR 92 151 -111 195 223 0 63 chr13 46079974 46080149 -73664749 + (TA)n Simple_repeat Simple_repeat 1 164 0 354 205 0 49 chr13 46080160 46080345 -73664553 + (TA)n Simple_repeat Simple_repeat 1 176 0 289 229 14 0 chr13 46080358 46080428 -73664470 - HAL1 LINE L1 -971 1536 1466 351 0 0 0 chr13 46080455 46080494 -73664404 + (TA)n Simple_repeat Simple_repeat 1 39 0 2057 109 22 0 chr13 46080832 46081107 -73663791 - AluSp SINE Alu -28 285 5 258 283 76 69 chr13 46081256 46081832 -73663066 - L1M4 LINE L1 -1089 5057 4478 339 215 51 0 chr13 46081888 46081967 -73662931 - HAL1 LINE L1 -952 1555 1473 694 111 83 19 chr13 46082376 46082484 -73662414 - FRAM SINE Alu -25 151 37 27 81 0 0 chr13 46082980 46083042 -73661856 + AT_rich Low_complexity Low_complexity 1 62 0 292 213 16 16 chr13 46083257 46083318 -73661580 - MIR SINE MIR -6 256 196 327 286 166 0 chr13 46083679 46083854 -73661044 + MIR SINE MIR 3 206 -56 918 322 122 12 chr13 46084210 46084874 -73660024 + L2 LINE L2 1396 2132 -1182 285 336 35 26 chr13 46084994 46085107 -73659791 - L2 LINE L2 -12 3260 3147 427 298 29 44 chr13 46085444 46085649 -73659249 - HAL1 LINE L1 0 2507 2306 333 259 129 0 chr13 46085698 46085868 -73659030 - HAL1 LINE L1 -276 2231 2040 307 185 0 0 chr13 46085896 46085950 -73658948 - LTR3b LTR ERVK 0 500 447 3005 116 61 4 chr13 46085950 46086407 -73658491 - LTR3b LTR ERVK -17 483 1 2141 265 65 14 chr13 46086407 46088088 -73656810 - HAL1 LINE L1 -507 2000 1 549 230 82 0 chr13 46088931 46089066 -73655832 - MIR SINE MIR -13 249 104 550 303 34 0 chr13 46090254 46090429 -73654469 + MIR SINE MIR 76 256 -6 611 345 72 14 chr13 46092171 46092533 -73652365 + L2 LINE L2 2150 2532 -782 227 357 36 54 chr13 46092541 46092709 -73652189 - L2 LINE L2 -8 3264 3100 762 277 36 9 chr13 46092755 46092975 -73651923 - MIR SINE MIR -24 238 13 24 0 0 0 chr13 46093325 46093349 -73651549 + AT_rich Low_complexity Low_complexity 1 24 0 42 82 0 0 chr13 46093847 46093945 -73650953 + AT_rich Low_complexity Low_complexity 1 98 0 1615 187 6 12 chr13 46094092 46094418 -73650480 + L1MB1 LINE L1 5799 6122 -46 608 302 210 8 chr13 46094699 46095080 -73649818 + L2 LINE L2 1901 2358 -956 924 321 113 30 chr13 46095088 46095761 -73649137 + L2 LINE L2 2569 3308 -5 339 225 7 4 chr13 46097002 46097077 -73647821 - AluJ/monomer SINE Alu -248 55 1 1913 110 0 0 chr13 46097281 46097536 -73647362 - AluSx SINE Alu -14 298 44 441 344 79 22 chr13 46097846 46098073 -73646825 + MIR SINE MIR 5 244 -18 2190 115 3 3 chr13 46098592 46098904 -73645994 + AluSq SINE Alu 1 312 -1 2363 243 60 41 chr13 46099196 46099979 -73644919 + L1MEc LINE L1 35 832 -5564 1451 209 73 6 chr13 46102461 46102805 -73642093 - MLT1A2 LTR MaLR -3 371 5 682 345 89 44 chr13 46102820 46103506 -73641392 + HAL1b LINE L1 61 777 -571 1601 152 16 0 chr13 46103629 46103872 -73641026 - AluSx SINE Alu -61 251 5 495 318 64 42 chr13 46104042 46104494 -73640404 + L1MEc LINE L1 2172 2586 -3629 1213 128 29 0 chr13 46104725 46104929 -73639969 + L1MA4A LINE L1 6086 6295 -8 543 331 61 20 chr13 46105383 46105779 -73639119 - L1MC/D LINE L1 -2143 5665 5254 2282 97 50 42 chr13 46106827 46107187 -73637711 - THE1B LTR MaLR -1 363 1 278 346 15 8 chr13 46107642 46107772 -73637126 + L2 LINE L2 3181 3311 -2 318 330 191 10 chr13 46108347 46108556 -73636342 + MIR SINE MIR 14 260 -2 805 134 76 41 chr13 46108808 46108980 -73635918 - MER53 DNA DNA -7 182 5 242 87 22 0 chr13 46109137 46109183 -73635715 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6648 202 25 13 chr13 46109569 46112027 -73632871 - L1MB3 LINE L1 -30 6389 3902 12694 177 35 24 chr13 46112084 46114516 -73630382 - L1MB3 LINE L1 -2888 3494 1090 2111 133 10 3 chr13 46114516 46114824 -73630074 - AluSq SINE Alu -3 310 1 12694 177 35 24 chr13 46114824 46114940 -73629958 - L1MB3 LINE L1 -5292 1090 977 2066 147 3 0 chr13 46114940 46115247 -73629651 - AluSc SINE Alu -1 308 1 12694 177 35 24 chr13 46115247 46115315 -73629583 - L1MB3 LINE L1 -5405 977 911 189 0 0 0 chr13 46115315 46115336 -73629562 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 12694 177 35 24 chr13 46115336 46116156 -73628742 - L1MB3 LINE L1 -5471 911 20 29 0 0 0 chr13 46116379 46116408 -73628490 + AT_rich Low_complexity Low_complexity 1 29 0 2408 88 0 0 chr13 46116835 46117140 -73627758 + AluY SINE Alu 1 305 -6 561 224 22 117 chr13 46118090 46118313 -73626585 - MIR SINE MIR -29 233 32 1224 283 55 25 chr13 46120307 46120706 -73624192 - LTR16C LTR ERVL 0 491 81 22 70 0 0 chr13 46121280 46121323 -73623575 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 46121638 46121660 -73623238 + AT_rich Low_complexity Low_complexity 1 22 0 1550 262 26 4 chr13 46122094 46122598 -73622300 - L1P LINE L1 -2885 3261 2747 180 97 0 0 chr13 46122620 46122651 -73622247 + L2 LINE L2 2943 2973 -340 813 267 42 84 chr13 46122810 46123166 -73621732 + L2 LINE L2 2972 3312 -1 1458 205 15 0 chr13 46123668 46123936 -73620962 - AluJo SINE Alu -25 287 16 22 35 0 0 chr13 46123936 46123965 -73620933 + AT_rich Low_complexity Low_complexity 1 29 0 1497 194 4 18 chr13 46123965 46124243 -73620655 + AluJo SINE Alu 1 274 -38 1659 120 0 0 chr13 46124269 46124528 -73620370 + L1MA2 LINE L1 6046 6304 0 15722 206 50 16 chr13 46124749 46130140 -73614758 + L1PA15 LINE L1 1247 6816 0 349 242 159 17 chr13 46130250 46130482 -73614416 - MER5C DNA MER1_type 0 324 4 1856 198 17 14 chr13 46130573 46130926 -73613972 + MLT1A1 LTR MaLR 12 365 0 416 270 63 0 chr13 46130935 46131046 -73613852 + L2 LINE L2 3196 3313 0 2327 50 7 0 chr13 46131488 46131786 -73613112 + AluY SINE Alu 1 300 0 2584 137 74 11 chr13 46133574 46134048 -73610850 - MLT1D LTR MaLR 0 505 2 288 355 63 18 chr13 46134319 46134510 -73610388 - MIR SINE MIR -57 151 3 1423 258 102 38 chr13 46135774 46136461 -73608437 - HAL1 LINE L1 -32 2475 1745 279 203 0 0 chr13 46136461 46136520 -73608378 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 248 167 0 37 chr13 46136521 46136575 -73608323 - L1MC4 LINE L1 -1339 6703 6652 1215 264 87 25 chr13 46136602 46137117 -73607781 - HAL1 LINE L1 -794 1713 1167 1056 219 105 30 chr13 46137182 46137621 -73607277 + Charlie1b DNA MER1_type 51 522 -1 1781 261 125 52 chr13 46137625 46138520 -73606378 - HAL1 LINE L1 -1461 1046 87 290 267 7 7 chr13 46138526 46138661 -73606237 + (TA)n Simple_repeat Simple_repeat 2 136 0 27 49 0 0 chr13 46139126 46139167 -73605731 + AT_rich Low_complexity Low_complexity 1 41 0 191 354 0 15 chr13 46139893 46139958 -73604940 - MER5A DNA MER1_type -86 103 40 498 317 157 3 chr13 46140578 46140884 -73604014 + L3 LINE CR1 1218 1570 -7 23 0 0 0 chr13 46141041 46141064 -73603834 + AT_rich Low_complexity Low_complexity 1 23 0 1280 235 81 30 chr13 46141086 46141456 -73603442 - MSTD LTR MaLR -7 389 1 920 166 7 0 chr13 46141626 46141771 -73603127 - MER44D DNA MER2_type 0 605 588 779 166 6 103 chr13 46141771 46141946 -73602952 - FRAM SINE Alu -17 159 2 3237 196 14 2 chr13 46141946 46142534 -73602364 - MER44D DNA MER2_type -105 600 6 1578 204 36 31 chr13 46143013 46143370 -73601528 + MLT1A1 LTR MaLR 1 359 -6 276 243 129 7 chr13 46143476 46143616 -73601282 + LTR68 LTR ERV1 9 165 -575 553 348 179 14 chr13 46144124 46145160 -73599738 + L2 LINE L2 1264 2470 -844 216 0 0 0 chr13 46145703 46145727 -73599171 + (T)n Simple_repeat Simple_repeat 1 24 0 1916 216 31 13 chr13 46146387 46146835 -73598063 - LTR40b LTR ERVL -3 459 4 3315 132 8 4 chr13 46146936 46147429 -73597469 + MER41E LTR ERV1 17 511 -1 559 187 66 28 chr13 46147837 46148019 -73596879 - L1MC5 LINE L1 -34 7927 7739 333 118 0 0 chr13 46148295 46148346 -73596552 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1011 188 12 78 chr13 46149365 46149610 -73595288 - L1PA16 LINE L1 -16 6150 5922 515 112 45 0 chr13 46150519 46150608 -73594290 - L1PA16 LINE L1 -5 6161 6069 475 284 35 55 chr13 46150682 46150883 -73594015 + MIR SINE MIR 25 221 -41 425 285 233 5 chr13 46152411 46152604 -73592294 + MIR SINE MIR 20 256 -6 687 153 16 32 chr13 46153002 46153126 -73591772 - LTR54B LTR ERV1 -363 135 14 687 110 0 0 chr13 46153683 46153783 -73591115 + L1P3 LINE L1 733 832 -5043 238 235 20 0 chr13 46153783 46153834 -73591064 + LTR30 LTR ERV1 1 52 -670 1316 103 11 119 chr13 46153834 46154095 -73590803 + LTR12 LTR ERV1 53 285 -429 323 233 11 0 chr13 46154095 46154185 -73590713 + LTR30 LTR ERV1 552 642 -80 1529 120 36 0 chr13 46154187 46154412 -73590486 + LTR12 LTR ERV1 481 713 -1 19469 136 16 16 chr13 46154412 46156690 -73588208 + L1P3 LINE L1 828 3105 -3356 834 109 16 0 chr13 46156690 46156809 -73588089 + L1PA7 LINE L1 6017 6146 -8 19469 136 16 16 chr13 46156809 46159162 -73585736 + L1P3 LINE L1 3105 5514 -947 1897 246 66 36 chr13 46159167 46159606 -73585292 - HERV15 LTR ERV1 -3686 5049 4581 2208 88 0 7 chr13 46159606 46159921 -73584977 - AluY SINE Alu 0 313 1 1897 246 66 36 chr13 46159921 46160148 -73584750 - HERV15 LTR ERV1 -4154 4581 4362 * 6164 290 33 47 chr13 46160133 46162751 -73582147 - HERV15 LTR ERV1 -5843 2583 1 622 205 136 61 chr13 46162751 46163155 -73581743 - LTR30 LTR ERV1 0 596 190 29 28 0 0 chr13 46163508 46163544 -73581354 + AT_rich Low_complexity Low_complexity 1 36 0 357 266 25 118 chr13 46163908 46164145 -73580753 - L3 LINE CR1 -303 1274 1060 246 291 66 60 chr13 46165422 46165573 -73579325 + L2 LINE L2 1752 1903 -1411 753 276 46 8 chr13 46166083 46166322 -73578576 - MIR SINE MIR 0 262 15 2505 30 7 3 chr13 46166705 46167006 -73577892 + AluY SINE Alu 1 302 -9 330 262 0 0 chr13 46167243 46167304 -73577594 - MER81 DNA DNA -49 65 5 1017 269 112 44 chr13 46169556 46170054 -73574844 - L2 LINE L2 0 3313 2795 2564 167 16 7 chr13 46170058 46170507 -73574391 + MLT1C LTR MaLR 10 462 -5 1220 222 50 104 chr13 46170512 46171031 -73573867 - L2 LINE L2 -517 2797 2307 335 317 58 0 chr13 46172915 46173019 -73571879 - MIR SINE MIR -69 139 30 21 36 0 0 chr13 46173417 46173445 -73571453 + AT_rich Low_complexity Low_complexity 1 28 0 258 136 0 0 chr13 46173515 46173559 -73571339 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 233 342 27 77 chr13 46173828 46174126 -73570772 - L2 LINE L2 -337 2977 2695 482 118 0 118 chr13 46174239 46174443 -73570455 + (TA)n Simple_repeat Simple_repeat 1 180 0 1209 242 121 22 chr13 46175649 46175904 -73568994 - MLT1D LTR MaLR -5 500 272 369 75 0 0 chr13 46175904 46175957 -73568941 + (TG)n Simple_repeat Simple_repeat 1 53 0 1209 242 121 22 chr13 46175957 46176156 -73568742 - MLT1D LTR MaLR -233 272 1 747 277 42 8 chr13 46176626 46176864 -73568034 - MIR SINE MIR 0 262 17 22 70 0 0 chr13 46177345 46177388 -73567510 + AT_rich Low_complexity Low_complexity 1 43 0 198 118 0 0 chr13 46178117 46178151 -73566747 + (TC)n Simple_repeat Simple_repeat 2 35 0 402 21 0 0 chr13 46178153 46178200 -73566698 + (CA)n Simple_repeat Simple_repeat 1 47 0 287 200 36 86 chr13 46178513 46178530 -73566368 - L1MA10 LINE L1 -2 6332 6316 358 240 77 81 chr13 46178530 46178822 -73566076 - L1ME1 LINE L1 -14 6152 5873 * 1355 224 41 10 chr13 46178820 46179330 -73565568 - L1ME1 LINE L1 -718 5466 4943 242 218 0 18 chr13 46180103 46180158 -73564740 + (TG)n Simple_repeat Simple_repeat 1 54 0 451 303 61 35 chr13 46181029 46181227 -73563671 - MIR SINE MIR -39 223 21 268 258 11 43 chr13 46182549 46182642 -73562256 + (TATATG)n Simple_repeat Simple_repeat 5 94 0 233 168 10 109 chr13 46182645 46182746 -73562152 + L1MC4 LINE L1 6615 6705 -1337 322 237 44 26 chr13 46182746 46182860 -73562038 + (TATATG)n Simple_repeat Simple_repeat 6 121 0 2519 135 29 11 chr13 46182948 46183400 -73561498 - L1MA8 LINE L1 0 6291 5832 407 289 52 0 chr13 46184184 46184319 -73560579 - MIR3 SINE MIR -20 188 47 317 349 35 30 chr13 46185474 46185643 -73559255 + MIR SINE MIR 76 245 -17 432 217 78 55 chr13 46185746 46185963 -73558935 - MER112 DNA MER1_type -38 222 1 385 246 0 73 chr13 46186098 46186151 -73558747 + MIR SINE MIR 105 148 -114 2222 123 0 16 chr13 46186151 46186469 -73558429 + AluSq SINE Alu 1 313 0 385 246 0 73 chr13 46186469 46186525 -73558373 + MIR SINE MIR 148 206 -56 223 220 242 77 chr13 46188223 46188405 -73556493 - MIR SINE MIR -50 212 1 379 278 153 31 chr13 46188657 46188953 -73555945 + MLT1L LTR MaLR 216 615 0 474 295 121 5 chr13 46189421 46189645 -73555253 - MIR SINE MIR -6 256 7 2305 86 13 0 chr13 46189975 46190278 -73554620 + AluSp SINE Alu 1 307 -6 484 290 73 13 chr13 46190390 46190693 -73554205 + L1ME4a LINE L1 5687 6007 -114 26 64 0 0 chr13 46190700 46190747 -73554151 + AT_rich Low_complexity Low_complexity 1 47 0 2160 156 30 28 chr13 46190917 46191348 -73553550 + MSTB1 LTR MaLR 1 432 0 338 309 50 83 chr13 46191565 46191928 -73552970 - L2 LINE L2 -136 3177 2827 2196 80 58 0 chr13 46194011 46194287 -73550611 - AluSg SINE Alu -18 292 1 276 141 56 14 chr13 46194294 46194365 -73550533 - L1MD3 LINE L1 0 7995 7922 476 306 102 24 chr13 46194661 46194867 -73550031 + MIR SINE MIR 28 249 -13 2519 185 67 45 chr13 46194910 46195536 -73549362 + MER82 DNA MER2_type 1 640 -13 788 291 26 0 chr13 46195809 46196036 -73548862 + MIR SINE MIR 1 233 -29 2163 120 0 3 chr13 46196252 46196702 -73548196 - AluSg1 SINE Alu 0 449 1 208 333 90 0 chr13 46196715 46196793 -73548105 + L2 LINE L2 3229 3313 0 196 316 0 18 chr13 46197001 46197058 -73547840 + MER5A DNA MER1_type 46 101 -88 375 298 8 53 chr13 46197156 46197287 -73547611 + L2 LINE L2 3189 3313 0 400 262 83 30 chr13 46197370 46197538 -73547360 - MER5A DNA MER1_type -6 183 7 1996 167 37 31 chr13 46197666 46198214 -73546684 - MLT2A2 LTR ERVL 0 554 1 9144 160 9 4 chr13 46199616 46201340 -73543558 - L1P3 LINE L1 -2692 3769 2038 741 228 6 6 chr13 46201338 46201505 -73543393 - L1P3 LINE L1 -5708 167 1 * 2034 143 10 0 chr13 46201510 46201841 -73543057 - AluSx SINE Alu 0 334 1 2050 262 92 44 chr13 46202388 46202865 -73542033 - HAL1 LINE L1 -414 2093 1640 2555 175 7 85 chr13 46202865 46203475 -73541423 + MER68 LTR ERV1 1 562 0 2050 262 92 44 chr13 46203475 46204307 -73540591 - HAL1 LINE L1 -867 1640 722 231 311 129 0 chr13 46204364 46204496 -73540402 - HAL1 LINE L1 -1901 606 458 552 282 23 53 chr13 46204662 46204924 -73539974 - HAL1 LINE L1 -2250 257 4 353 250 0 0 chr13 46204959 46205031 -73539867 + L2 LINE L2 3234 3305 -8 220 232 11 11 chr13 46205031 46205126 -73539772 + (TA)n Simple_repeat Simple_repeat 2 96 0 303 296 177 58 chr13 46205205 46205337 -73539561 - MLT1K LTR MaLR -63 525 410 1837 147 26 57 chr13 46205337 46205724 -73539174 - THE1C LTR MaLR 0 375 1 303 296 177 58 chr13 46205724 46205902 -73538996 - MLT1K LTR MaLR -178 410 178 264 237 0 82 chr13 46205912 46206009 -73538889 + MER58 DNA MER1_type 11 99 -242 248 180 0 33 chr13 46206026 46206087 -73538811 + MER58 DNA MER1_type 2328 2386 -34 298 273 23 0 chr13 46206700 46206788 -73538110 + L1MC4 LINE L1 6614 6703 -1339 22 0 0 0 chr13 46206788 46206810 -73538088 + AT_rich Low_complexity Low_complexity 1 22 0 394 266 179 23 chr13 46207029 46207247 -73537651 + L1MC4a LINE L1 5597 5848 -1960 2280 127 31 14 chr13 46207250 46207607 -73537291 + THE1B LTR MaLR 1 426 0 285 247 25 0 chr13 46207719 46207800 -73537098 + L1MC4 LINE L1 6617 6699 -1343 * 702 296 99 63 chr13 46207774 46208584 -73536314 + L1MC4a LINE L1 5948 6786 -1022 760 116 0 16 chr13 46208584 46208705 -73536193 + L1PA11 LINE L1 6053 6171 -3 1681 128 24 14 chr13 46208754 46209050 -73535848 - L1MA4 LINE L1 -7 6293 5995 329 156 31 0 chr13 46209108 46209172 -73535726 + L1MC5 LINE L1 7000 7065 -896 1740 189 52 6 chr13 46209260 46209609 -73535289 + MLT1A1 LTR MaLR 1 365 0 469 246 29 14 chr13 46210603 46210741 -73534157 + L1MC5 LINE L1 7095 7234 -727 244 254 123 72 chr13 46210838 46211243 -73533655 + L1MC5 LINE L1 7250 7675 -286 2730 175 223 48 chr13 46211243 46211964 -73532934 + MER52A LTR ERV1 1 847 -908 2649 95 171 122 chr13 46212138 46213130 -73531768 - LTR12 LTR ERV1 0 2429 57 257 231 0 0 chr13 46213132 46213184 -73531714 - LTR30 LTR ERV1 -670 52 1 391 263 105 58 chr13 46213357 46213434 -73531464 + L1ME2 LINE L1 1278 1350 -5772 2409 90 0 7 chr13 46213434 46213744 -73531154 + AluSp SINE Alu 1 308 -5 391 263 105 58 chr13 46213744 46214138 -73530760 + L1ME2 LINE L1 1350 1724 -5398 261 0 0 0 chr13 46214138 46214167 -73530731 + (CA)n Simple_repeat Simple_repeat 2 30 0 391 263 105 58 chr13 46214167 46214342 -73530556 + L1ME2 LINE L1 1724 2173 -4949 * 1735 259 90 36 chr13 46214326 46214553 -73530345 + L1ME2 LINE L1 5028 5241 -1700 1321 19 0 0 chr13 46214553 46214708 -73530190 - L1PA4 LINE L1 0 6155 6001 1735 259 90 36 chr13 46214708 46215412 -73529486 + L1ME2 LINE L1 5241 6009 -932 * 1997 241 68 37 chr13 46215394 46216012 -73528886 + L1MCa LINE L1 5 641 -5785 458 196 65 0 chr13 46216044 46216151 -73528747 + L1MCa LINE L1 573 686 -5740 2822 168 8 48 chr13 46216158 46216788 -73528110 + L1MC2 LINE L1 5727 6331 -13 2077 219 93 20 chr13 46216791 46217249 -73527649 + L1ME2 LINE L1 5991 6524 -435 2181 113 0 3 chr13 46217249 46217542 -73527356 + AluSx SINE Alu 1 292 -20 2077 219 93 20 chr13 46217542 46217825 -73527073 + L1ME2 LINE L1 6524 6785 -174 1094 181 0 0 chr13 46217838 46218015 -73526883 + MER58A DNA MER1_type 47 223 -1 340 290 125 11 chr13 46218805 46218981 -73525917 - MIR SINE MIR 0 262 67 4024 210 40 31 chr13 46219069 46220142 -73524756 - Tigger6a DNA MER2_type 0 1083 1 289 262 29 40 chr13 46221442 46221618 -73523280 - L1ME LINE L1 -273 5897 5725 2082 108 0 0 chr13 46221725 46222004 -73522894 - AluSq SINE Alu 0 313 35 264 256 183 17 chr13 46222047 46222181 -73522717 - L1P4 LINE L1 -596 5570 5417 250 314 41 29 chr13 46222252 46222424 -73522474 - L2 LINE L2 -1410 1904 1731 386 162 101 30 chr13 46223171 46223270 -73521628 - L1MC2 LINE L1 0 6344 6239 3083 102 104 8 chr13 46223295 46223776 -73521122 - MER1A DNA MER1_type 0 527 1 22 56 0 0 chr13 46224266 46224302 -73520596 + AT_rich Low_complexity Low_complexity 1 36 0 3782 219 47 22 chr13 46225483 46226570 -73518328 - L1M4 LINE L1 -1373 4773 3660 890 326 109 5 chr13 46226678 46227089 -73517809 - L2 LINE L2 0 3313 2860 507 286 108 69 chr13 46227095 46227473 -73517425 - MLT1J LTR MaLR -3 508 116 1806 160 36 3 chr13 46227572 46227929 -73516969 + L1MA8 LINE L1 5918 6286 -5 360 300 75 0 chr13 46228118 46228238 -73516660 - LTR16C LTR ERVL -2 489 361 725 356 41 41 chr13 46228465 46229153 -73515745 - ERVL LTR ERVL -423 5341 4654 1272 136 0 0 chr13 46229170 46229384 -73515514 - L1MA4 LINE L1 0 6300 6087 615 169 16 0 chr13 46229393 46229517 -73515381 - L1MA3 LINE L1 -288 6017 5892 431 339 103 9 chr13 46229542 46229775 -73515123 - ERVL LTR ERVL -1188 4576 4322 1309 140 115 0 chr13 46229804 46230039 -73514859 - MER2 DNA MER2_type -83 262 1 658 333 77 35 chr13 46230137 46230707 -73514191 - ERVL LTR ERVL -1543 4221 3628 375 331 58 26 chr13 46230731 46231021 -73513877 - ERVL LTR ERVL -2220 3434 3112 1900 320 95 58 chr13 46231138 46231699 -73513199 - ERVL LTR ERVL -2771 2993 2454 1564 132 14 14 chr13 46231699 46231979 -73512919 + L1MA5A LINE L1 6013 6292 -5 1900 320 95 58 chr13 46231979 46233064 -73511834 - ERVL LTR ERVL -3310 2454 1286 2241 211 38 58 chr13 46234058 46234690 -73510208 + MLT1D LTR MaLR 1 626 0 336 94 0 0 chr13 46235181 46235234 -73509664 + (CATTC)n Simple_repeat Simple_repeat 3 55 0 265 233 81 0 chr13 46235667 46235753 -73509145 - MIR SINE MIR -59 203 111 309 245 170 0 chr13 46237494 46237600 -73507298 + MIR SINE MIR 105 228 -34 306 329 2 29 chr13 46239316 46239466 -73505432 + MIR SINE MIR 22 166 -62 26 0 0 0 chr13 46239681 46239707 -73505191 + AT_rich Low_complexity Low_complexity 1 26 0 1084 220 3 80 chr13 46240413 46240713 -73504185 - MER76 LTR ERV -410 278 2 214 264 14 28 chr13 46240874 46240946 -73503952 + MIR SINE MIR 81 151 -57 1837 199 98 19 chr13 46241097 46241565 -73503333 + MLT1D LTR MaLR 1 505 0 259 346 162 13 chr13 46243019 46243253 -73501645 + L3 LINE CR1 1307 1575 -2 201 74 0 0 chr13 46243626 46243653 -73501245 + (T)n Simple_repeat Simple_repeat 1 27 0 225 328 141 0 chr13 46244481 46244609 -73500289 + LTR16C LTR ERVL 104 249 -242 396 0 0 0 chr13 46244747 46244791 -73500107 + (CA)n Simple_repeat Simple_repeat 1 44 0 2075 220 126 9 chr13 46244967 46245499 -73499399 - L1MCa LINE L1 -5816 610 17 2228 103 0 0 chr13 46246569 46246851 -73498047 + AluSx SINE Alu 12 293 -19 197 121 30 0 chr13 46247072 46247105 -73497793 - L2 LINE L2 -23 3249 3216 * 777 242 102 5 chr13 46247076 46247291 -73497607 - MIR SINE MIR -22 240 5 801 249 10 5 chr13 46247618 46247811 -73497087 + MIR SINE MIR 68 261 -1 1308 204 42 92 chr13 46248561 46249018 -73495880 - MER63B DNA MER1_type 0 436 3 1446 164 174 0 chr13 46249202 46249513 -73495385 + MER47A DNA MER2_type 2 366 0 193 304 165 9 chr13 46249703 46249818 -73495080 + L2 LINE L2 3169 3301 -12 622 221 13 20 chr13 46250958 46251107 -73493791 + L1M4 LINE L1 14 161 -6381 478 248 13 13 chr13 46251136 46251293 -73493605 - L1MB7 LINE L1 -3 6181 6025 1776 168 14 7 chr13 46251293 46251585 -73493313 + AluJb SINE Alu 1 294 -18 232 306 40 6 chr13 46252098 46252271 -73492627 - L1M4 LINE L1 -3519 2627 2449 21 36 0 0 chr13 46252321 46252349 -73492549 + AT_rich Low_complexity Low_complexity 1 28 0 2081 133 3 3 chr13 46252546 46252840 -73492058 - AluSx SINE Alu -16 296 3 358 318 75 34 chr13 46252844 46253083 -73491815 - L1MC4a LINE L1 -1983 5825 5577 1858 168 3 7 chr13 46253382 46253691 -73491207 - AluJb SINE Alu -2 310 3 3116 171 84 0 chr13 46253697 46254289 -73490609 + MER73 LTR ERVL 1 642 -2 2656 241 43 19 chr13 46254724 46255461 -73489437 + L1M4 LINE L1 4136 4890 -1754 1428 159 31 72 chr13 46255453 46255694 -73489204 + L1MB5 LINE L1 5867 6093 -81 * 2346 98 0 0 chr13 46255694 46255989 -73488909 + AluSx SINE Alu 1 295 -17 1428 159 31 72 chr13 46255989 46256068 -73488830 + L1MB5 LINE L1 6093 6174 0 21 0 0 0 chr13 46256105 46256126 -73488772 + AT_rich Low_complexity Low_complexity 1 21 0 571 273 65 22 chr13 46256192 46256548 -73488350 + L1M4 LINE L1 2194 2564 -3582 25 0 0 0 chr13 46257111 46257136 -73487762 + AT_rich Low_complexity Low_complexity 1 25 0 681 267 28 16 chr13 46257194 46257449 -73487449 - MIR SINE MIR -1 261 4 405 281 15 55 chr13 46257494 46257640 -73487258 - MIR3 SINE MIR -64 144 9 297 197 51 17 chr13 46258122 46258239 -73486659 + (TA)n Simple_repeat Simple_repeat 2 122 0 667 242 36 0 chr13 46258880 46259045 -73485853 - MER5B DNA MER1_type -4 174 4 197 308 19 0 chr13 46259567 46259619 -73485279 + MIR SINE MIR 66 118 -90 216 295 158 0 chr13 46260650 46260745 -73484153 + L2 LINE L2 3163 3272 0 414 0 0 0 chr13 46261204 46261250 -73483648 + (TG)n Simple_repeat Simple_repeat 1 46 0 1766 100 0 8 chr13 46261283 46261522 -73483376 + AluSg/x SINE Alu 73 309 -3 25 0 0 0 chr13 46261720 46261745 -73483153 + AT_rich Low_complexity Low_complexity 1 25 0 204 269 340 19 chr13 46262071 46262227 -73482671 + MIR SINE MIR 50 255 -7 497 79 53 0 chr13 46264659 46264735 -73480163 - MADE1 DNA Mariner 0 80 1 196 226 22 109 chr13 46264805 46264907 -73479991 - MIR SINE MIR -75 133 74 505 333 31 0 chr13 46264956 46265118 -73479780 - MIR3 SINE MIR -28 180 14 619 296 105 4 chr13 46265441 46265626 -73479272 + MLT1L LTR MaLR 322 544 -71 762 234 61 5 chr13 46265626 46265823 -73479075 - MER63A DNA MER1_type -2 208 1 619 296 105 4 chr13 46265823 46265904 -73478994 + MLT1L LTR MaLR 544 615 0 823 113 8 8 chr13 46266539 46266672 -73478226 - L1MA3 LINE L1 0 6305 6173 232 211 113 42 chr13 46266875 46266946 -73477952 + MIR SINE MIR 79 154 -108 315 325 48 18 chr13 46268339 46268505 -73476393 - MIR SINE MIR -26 236 66 294 220 37 73 chr13 46268827 46268893 -73476005 - MER103 DNA DNA -52 114 52 2103 129 3 7 chr13 46268893 46269195 -73475703 - AluSp SINE Alu -12 301 1 294 220 37 73 chr13 46269195 46269237 -73475661 - MER103 DNA DNA -114 52 10 4086 184 45 7 chr13 46269467 46270720 -73474178 - L1MB7 LINE L1 -8 6674 5376 1857 166 19 44 chr13 46270730 46271050 -73473848 - AluJb SINE Alu 0 312 1 1576 215 63 14 chr13 46271051 46271479 -73473419 - MLT1C LTR MaLR 0 467 19 3894 217 40 84 chr13 46271521 46272736 -73472162 - MLT1C-int LTR MaLR 0 1371 210 382 225 18 78 chr13 46272729 46272947 -73471951 - L1MB7 LINE L1 -4907 1739 1535 * 25966 21 0 0 chr13 46272948 46276940 -73467958 - L1PA2 LINE L1 0 6155 2165 1138 231 25 76 chr13 46276941 46277494 -73467404 - L1MB7 LINE L1 -4977 1565 1041 1875 167 10 7 chr13 46277495 46277795 -73467103 + AluJb SINE Alu 1 301 -11 696 203 14 0 chr13 46277915 46278058 -73466840 + AluJb SINE Alu 159 303 -9 1739 204 49 34 chr13 46278063 46278557 -73466341 - L1MB7 LINE L1 -5494 1048 548 1270 237 70 45 chr13 46278872 46279497 -73465401 - HAL1b LINE L1 -631 717 77 298 270 22 11 chr13 46280166 46280255 -73464643 - MLT1J2 LTR MaLR -294 156 67 555 324 53 8 chr13 46280334 46280578 -73464320 - MLT1K LTR MaLR -177 411 157 1825 202 53 26 chr13 46280895 46280936 -73463962 + MLT1C LTR MaLR 1 39 -428 2282 105 0 3 chr13 46280936 46281230 -73463668 + AluSx SINE Alu 1 293 -19 1825 202 53 26 chr13 46281230 46281643 -73463255 + MLT1C LTR MaLR 39 467 0 3002 269 89 34 chr13 46281777 46283267 -73461631 - L1MEc LINE L1 -4694 1702 131 323 325 158 0 chr13 46284946 46285066 -73459832 - MIR SINE MIR -73 189 51 407 358 30 12 chr13 46287392 46287557 -73457341 - MIR SINE MIR -74 188 21 1565 231 71 0 chr13 46287803 46288171 -73456727 - MSTD LTR MaLR 0 396 3 288 111 0 0 chr13 46288472 46288517 -73456381 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 219 329 13 107 chr13 46288564 46288664 -73456234 - L2 LINE L2 -87 3185 3102 425 259 9 26 chr13 46288664 46288780 -73456118 + MER81 DNA DNA 1 114 0 219 329 13 107 chr13 46288780 46288828 -73456070 - L2 LINE L2 -170 3102 3051 297 0 0 0 chr13 46289006 46289039 -73455859 + (CA)n Simple_repeat Simple_repeat 2 34 0 243 0 0 0 chr13 46289038 46289065 -73455833 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 280 272 80 24 chr13 46290461 46290586 -73454312 + MER58C DNA MER1_type 1 132 -83 425 258 0 0 chr13 46290652 46290741 -73454157 + MER58C DNA MER1_type 127 215 0 541 227 0 57 chr13 46291126 46291267 -73453631 - FLAM_C SINE Alu 0 133 1 2073 153 7 0 chr13 46291275 46291582 -73453316 - AluJo SINE Alu -3 309 1 4518 64 7 7 chr13 46291606 46292201 -73452697 - L1PA7 LINE L1 -3 6151 5557 918 172 73 1 chr13 46292266 46292465 -73452433 + L1MA7 LINE L1 6031 6248 -43 2189 112 3 7 chr13 46292465 46292769 -73452129 + AluSq SINE Alu 1 303 -10 918 172 73 1 chr13 46292769 46292788 -73452110 + L1MA7 LINE L1 6248 6264 -27 334 224 20 68 chr13 46292820 46292967 -73451931 - L1MC4 LINE L1 -1339 6983 1925 1962 131 0 51 chr13 46292982 46293334 -73451564 - MER1B DNA MER1_type -5 334 1 1398 181 57 12 chr13 46294148 46294480 -73450418 - L1MC3 LINE L1 -18 7767 7421 401 200 90 0 chr13 46294525 46294625 -73450273 - L1MC3 LINE L1 -355 7430 7322 3854 157 88 13 chr13 46294644 46295470 -73449428 - L1MC1 LINE L1 -7 6326 5439 4289 203 59 32 chr13 46295485 46296634 -73448264 - L1MC3 LINE L1 -627 7158 5979 2152 204 36 0 chr13 46296744 46297245 -73447653 - L1P LINE L1 -967 5179 4661 * 3229 126 38 2 chr13 46297241 46297796 -73447102 - L1PA8A LINE L1 -2413 3733 3159 10118 109 8 4 chr13 46297797 46299681 -73445217 + L1PA8A LINE L1 3730 5621 -510 1496 216 74 24 chr13 46300046 46300467 -73444431 + L1ME3 LINE L1 5484 5925 -237 506 217 22 109 chr13 46300541 46300808 -73444090 + L1ME3 LINE L1 5911 6154 -8 456 241 94 29 chr13 46300850 46301020 -73443878 + MIR SINE MIR 66 246 -16 237 195 39 91 chr13 46303146 46303223 -73441675 + MER91B DNA MER1_type 1 73 -117 691 88 0 0 chr13 46303967 46304069 -73440829 - MLT2C2 LTR ERVL -361 103 2 24 0 0 0 chr13 46304092 46304116 -73440782 + AT_rich Low_complexity Low_complexity 1 24 0 920 193 36 0 chr13 46305482 46305674 -73439224 + MER3 DNA MER1_type 6 204 -5 26 0 0 0 chr13 46306053 46306079 -73438819 + AT_rich Low_complexity Low_complexity 1 26 0 976 282 90 40 chr13 46306395 46306903 -73437995 - L2 LINE L2 -3 3310 2777 2013 262 75 35 chr13 46306960 46307768 -73437130 - L2 LINE L2 -1185 2129 1289 257 366 88 16 chr13 46308508 46308814 -73436084 - L2 LINE L2 -947 2367 2040 559 277 31 65 chr13 46308889 46309181 -73435717 + MLT1I LTR MaLR 108 389 -20 525 296 66 10 chr13 46309773 46310013 -73434885 + MIR SINE MIR 9 260 -2 460 76 0 15 chr13 46310164 46310230 -73434668 - AluSc SINE Alu -14 295 231 245 282 14 0 chr13 46311445 46311516 -73433382 - MLT1J1 LTR MaLR 0 446 375 704 274 193 16 chr13 46311673 46311979 -73432919 + LTR16A LTR ERVL 90 449 -1 236 324 111 11 chr13 46312002 46312114 -73432784 - MLT1J1 LTR MaLR -230 220 98 26 0 0 0 chr13 46312798 46312824 -73432074 + AT_rich Low_complexity Low_complexity 1 26 0 1683 176 7 0 chr13 46313149 46313428 -73431470 - AluJb SINE Alu -31 281 1 204 290 29 0 chr13 46314119 46314188 -73430710 + (TTTA)n Simple_repeat Simple_repeat 4 74 0 331 277 80 66 chr13 46314198 46314335 -73430563 + L2 LINE L2 3171 3309 -4 449 268 129 21 chr13 46314346 46314540 -73430358 + MLT1J LTR MaLR 1 215 -296 678 279 105 0 chr13 46314637 46314856 -73430042 - L1ME3 LINE L1 -15 6147 5906 343 205 24 34 chr13 46314857 46315002 -73429896 - LTR50 LTR ERVL -2 793 637 378 285 36 54 chr13 46315276 46315497 -73429401 - LTR41 LTR ERVL -556 217 1 401 252 58 101 chr13 46315517 46315775 -73429123 + MLT1J LTR MaLR 221 467 -44 428 297 78 14 chr13 46316522 46316741 -73428157 - L1ME3 LINE L1 -823 5323 5091 215 349 97 67 chr13 46317586 46318034 -73426864 - L2 LINE L2 -107 3165 2698 2493 68 7 0 chr13 46318182 46318491 -73426407 + AluY SINE Alu 1 311 0 364 280 136 0 chr13 46319009 46319141 -73425757 + MIR SINE MIR 113 262 0 294 29 0 0 chr13 46319472 46319507 -73425391 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 198 71 0 0 chr13 46319508 46319536 -73425362 + (CCTA)n Simple_repeat Simple_repeat 1 28 0 2223 97 24 0 chr13 46319555 46319844 -73425054 + AluSx SINE Alu 1 296 -16 340 325 65 32 chr13 46320725 46320879 -73424019 - MIR SINE MIR -71 191 33 25 65 0 0 chr13 46320933 46320979 -73423919 + AT_rich Low_complexity Low_complexity 1 46 0 472 270 97 26 chr13 46321759 46322026 -73422872 - L1ME4a LINE L1 -254 5867 5582 973 138 0 0 chr13 46322797 46322967 -73421931 + AluSg/x SINE Alu 145 314 0 339 257 120 2 chr13 46322974 46323160 -73421738 + L1ME LINE L1 642 868 -5234 * 433 226 0 0 chr13 46323155 46323261 -73421637 + L1M4 LINE L1 4465 4570 -1576 1844 280 81 15 chr13 46323300 46323905 -73420993 + L1MDa LINE L1 18 839 -5701 1396 196 33 6 chr13 46323920 46324252 -73420646 + L1MDa LINE L1 1831 2171 -4369 1155 218 66 36 chr13 46324773 46325213 -73419685 + L1MDa LINE L1 2153 2605 -3935 23 0 0 0 chr13 46325370 46325393 -73419505 + AT_rich Low_complexity Low_complexity 1 23 0 377 99 84 28 chr13 46325413 46325484 -73419414 + L1MA1 LINE L1 6228 6302 0 260 200 0 0 chr13 46325500 46325545 -73419353 - L1MA2 LINE L1 -84 6220 6176 436 133 0 0 chr13 46325646 46325721 -73419177 + L1MA2 LINE L1 6230 6304 0 4778 116 18 11 chr13 46325734 46326499 -73418399 - L1MA2 LINE L1 -84 6220 5450 7019 224 13 6 chr13 46326625 46328454 -73416444 + L1MB7 LINE L1 1883 3714 -2432 962 135 0 29 chr13 46328454 46328624 -73416274 - L1 LINE L1 -1472 4674 4510 1779 202 106 19 chr13 46328633 46328717 -73416181 + L1P LINE L1 4454 4529 -1617 2052 132 0 0 chr13 46328717 46329006 -73415892 - AluSx SINE Alu -23 289 1 1779 202 106 19 chr13 46329006 46329291 -73415607 + L1MB7 LINE L1 4529 4883 -1263 297 0 0 0 chr13 46329291 46329324 -73415574 + (TG)n Simple_repeat Simple_repeat 2 34 0 1779 202 106 19 chr13 46329324 46329473 -73415425 + L1MB7 LINE L1 4883 5018 -1128 189 329 29 50 chr13 46329834 46329974 -73414924 + MIR SINE MIR 39 175 -87 1003 201 169 19 chr13 46329986 46330297 -73414601 + MER47B DNA MER2_type 1 417 -1 1545 202 3 7 chr13 46330371 46330663 -73414235 + AluJb SINE Alu 1 291 -21 1490 173 189 70 chr13 46331385 46331649 -73413249 - MLT1D LTR MaLR 0 505 274 2136 114 0 25 chr13 46331649 46331964 -73412934 + AluSx SINE Alu 1 307 -5 1490 173 189 70 chr13 46331964 46332144 -73412754 - MLT1D LTR MaLR -231 274 8 587 139 14 0 chr13 46332712 46332817 -73412081 - L1MA9 LINE L1 -210 5946 5839 245 235 0 0 chr13 46332816 46332867 -73412031 + L1P LINE L1 4930 4980 -1166 * 2122 68 79 7 chr13 46333233 46333513 -73411385 - AluY SINE Alu -11 300 1 1082 224 102 41 chr13 46336714 46337009 -73407889 + MLT1A1 LTR MaLR 1 313 -52 5501 104 10 2 chr13 46337018 46337819 -73407079 - L1PA15 LINE L1 -21 6144 5338 383 281 228 5 chr13 46337827 46338051 -73406847 - L2 LINE L2 -606 2708 2435 281 266 46 37 chr13 46338622 46338731 -73406167 - L2 LINE L2 -1067 2247 2138 703 302 43 47 chr13 46339126 46339696 -73405202 + L1MB7 LINE L1 5310 5890 -294 417 141 0 0 chr13 46340885 46340956 -73403942 + (TG)n Simple_repeat Simple_repeat 2 72 0 429 348 0 0 chr13 46341570 46341711 -73403187 + (TG)n Simple_repeat Simple_repeat 2 142 0 610 93 0 56 chr13 46342275 46342383 -73402515 + L1PA2 LINE L1 6054 6155 0 197 192 0 19 chr13 46343019 46343071 -73401827 + (TAA)n Simple_repeat Simple_repeat 2 52 0 867 242 27 7 chr13 46343077 46343280 -73401618 - MIR SINE MIR -46 216 18 2061 113 35 0 chr13 46344768 46345050 -73399848 + AluSg SINE Alu 1 292 -18 24 0 0 0 chr13 46345765 46345789 -73399109 + AT_rich Low_complexity Low_complexity 1 24 0 692 269 69 29 chr13 46346243 46346618 -73398280 + L1M4 LINE L1 4968 5357 -789 372 296 94 5 chr13 46346659 46346862 -73398036 + L1ME3A LINE L1 5064 5284 -862 290 111 95 0 chr13 46346876 46346939 -73397959 + L1MC2 LINE L1 6275 6343 -1 186 43 0 0 chr13 46346942 46346965 -73397933 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 305 218 35 23 chr13 46346969 46347056 -73397842 + L1P LINE L1 5311 5398 -768 * 1288 99 0 0 chr13 46347052 46347233 -73397665 - L1PA8 LINE L1 -1158 4988 4808 6890 61 3 6 chr13 46347235 46348401 -73396497 + L1PA8 LINE L1 4990 6155 -17 1437 233 126 28 chr13 46348478 46349087 -73395811 + L1ME3A LINE L1 5453 6143 -21 1744 185 47 31 chr13 46349657 46350079 -73394819 - L1MA10 LINE L1 -12 6322 5894 269 289 12 12 chr13 46350439 46350522 -73394376 + CT-rich Low_complexity Low_complexity 3 85 0 192 391 76 60 chr13 46351198 46351382 -73393516 + L2 LINE L2 3007 3193 -79 1813 206 122 4 chr13 46352026 46352478 -73392420 + MLT1D LTR MaLR 1 505 0 234 0 0 0 chr13 46352678 46352704 -73392194 + (TTA)n Simple_repeat Simple_repeat 2 27 0 389 319 37 15 chr13 46353831 46353966 -73390932 + MIR3 SINE MIR 11 148 -60 273 327 96 0 chr13 46354341 46354445 -73390453 + MIR SINE MIR 19 132 -130 237 169 0 0 chr13 46354800 46354859 -73390039 + CT-rich Low_complexity Low_complexity 2 60 0 363 44 0 0 chr13 46354861 46354906 -73389992 + (CA)n Simple_repeat Simple_repeat 1 45 0 317 290 48 8 chr13 46355215 46355334 -73389564 - MIR SINE MIR -56 152 40 1928 250 62 7 chr13 46355805 46356369 -73388529 + L1M4 LINE L1 4557 5151 -995 1837 179 62 89 chr13 46356516 46357030 -73387868 - MLT1D LTR MaLR 0 505 6 21 0 0 0 chr13 46358315 46358336 -73386562 + AT_rich Low_complexity Low_complexity 1 21 0 346 321 0 0 chr13 46359442 46359554 -73385344 - MIR SINE MIR 0 262 151 302 316 21 0 chr13 46361201 46361296 -73383602 - MIR SINE MIR -50 212 116 807 318 26 0 chr13 46361371 46361604 -73383294 + MIR SINE MIR 11 249 -13 251 291 137 8 chr13 46361643 46361760 -73383138 + L2 LINE L2 3167 3298 -15 517 240 124 46 chr13 46362685 46362902 -73381996 - MIR SINE MIR -12 250 17 1343 132 42 68 chr13 46363284 46363549 -73381349 - MSTA LTR MaLR -1 427 170 882 83 0 0 chr13 46363549 46363658 -73381240 + AluY SINE Alu 1 109 -202 578 67 0 11 chr13 46363658 46363773 -73381125 + Alu SINE Alu 224 312 0 873 121 150 0 chr13 46363773 46363913 -73380985 - MSTA LTR MaLR -250 178 18 314 395 107 11 chr13 46364157 46364420 -73380478 - L2 LINE L2 0 3272 2985 530 94 7 17 chr13 46364692 46364825 -73380073 + L1M2 LINE L1 5326 5452 -704 634 314 181 13 chr13 46365037 46365419 -73379479 + LTR33 LTR ERVL 76 521 0 266 380 38 20 chr13 46365604 46365774 -73379124 - MIR SINE MIR -75 187 7 243 389 94 7 chr13 46366155 46366304 -73378594 - MIR SINE MIR -75 187 26 2541 53 0 0 chr13 46366664 46366966 -73377932 - AluY SINE Alu -9 302 1 4665 175 47 17 chr13 46367173 46368214 -73376684 + L1MA8 LINE L1 5216 6286 -5 2049 239 70 31 chr13 46368254 46369289 -73375609 + L1ME3 LINE L1 4501 5583 -579 1126 161 0 0 chr13 46369296 46369489 -73375409 + L1PB1 LINE L1 8 200 -6663 4256 122 59 8 chr13 46369491 46370632 -73374266 + L1PB1 LINE L1 636 1978 -4885 1604 164 8 109 chr13 46370632 46371028 -73373870 + LTR8 LTR ERV1 1 356 -335 4223 190 26 8 chr13 46371162 46372066 -73372832 + L1 LINE L1 3495 4415 -1731 1298 206 18 0 chr13 46372077 46372358 -73372540 + L1PB1 LINE L1 2951 3236 -3626 * 4910 148 12 69 chr13 46372348 46374099 -73370799 + L1PB1 LINE L1 5132 6797 -70 731 250 31 35 chr13 46374083 46374311 -73370587 + L1ME3 LINE L1 5849 6075 -87 * 460 202 0 11 chr13 46374527 46374621 -73370277 + MLT1A1 LTR MaLR 1 93 -272 1574 139 37 29 chr13 46374721 46374789 -73370109 + MLT1A1 LTR MaLR 91 157 -208 1492 119 163 16 chr13 46374789 46375041 -73369857 + AluSg1 SINE Alu 1 289 -20 1574 139 37 29 chr13 46375041 46375245 -73369653 + MLT1A1 LTR MaLR 157 365 0 2204 92 0 7 chr13 46375322 46375606 -73369292 + AluY SINE Alu 1 282 -29 28 0 0 0 chr13 46375614 46375642 -73369256 + AT_rich Low_complexity Low_complexity 1 28 0 383 88 63 38 chr13 46375873 46375994 -73368904 + (TA)n Simple_repeat Simple_repeat 1 128 -35 1148 171 45 0 chr13 46375994 46376193 -73368705 + MER6B DNA MER2_type 3 210 0 383 88 63 38 chr13 46376193 46376230 -73368668 + (TA)n Simple_repeat Simple_repeat 128 163 0 192 40 0 0 chr13 46376610 46376635 -73368263 + (CA)n Simple_repeat Simple_repeat 2 26 0 271 217 214 67 chr13 46376635 46376760 -73368138 - L1ME4a LINE L1 -19 6102 5997 1529 170 41 52 chr13 46376760 46377125 -73367773 - MLT1A1 LTR MaLR -4 361 1 271 217 214 67 chr13 46377125 46377340 -73367558 - L1ME4a LINE L1 -124 5997 5712 267 263 0 0 chr13 46377538 46377595 -73367303 - L2 LINE L2 -6 3307 3251 24 0 0 0 chr13 46378731 46378755 -73366143 + AT_rich Low_complexity Low_complexity 1 24 0 2003 140 17 10 chr13 46379991 46380291 -73364607 - AluSx SINE Alu -10 302 1 225 320 117 10 chr13 46380617 46380720 -73364178 - MIR3 SINE MIR -52 156 43 203 375 0 14 chr13 46381885 46381957 -73362941 + MIR SINE MIR 37 107 -155 2635 113 15 0 chr13 46382476 46382866 -73362032 + L1PA15 LINE L1 5768 6163 -2 4714 260 68 31 chr13 46382927 46384984 -73359914 - L1MEc LINE L1 -4228 2168 37 1012 233 141 98 chr13 46387167 46387536 -73357362 + MLT1G LTR MaLR 1 385 -210 410 206 88 101 chr13 46387537 46387765 -73357133 + L1M4 LINE L1 4895 5119 -1027 691 188 111 0 chr13 46388001 46388162 -73356736 + L1ME1 LINE L1 5999 6184 0 22 35 0 0 chr13 46388303 46388332 -73356566 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 46388666 46388694 -73356204 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr13 46389524 46389551 -73355347 + (A)n Simple_repeat Simple_repeat 1 27 0 2058 122 7 3 chr13 46389610 46389913 -73354985 - AluSx SINE Alu -8 304 1 398 340 49 12 chr13 46390000 46390162 -73354736 + MIR3 SINE MIR 16 183 -25 212 206 147 98 chr13 46390570 46390672 -73354226 - MIR SINE MIR -31 231 125 448 345 20 35 chr13 46390696 46390893 -73354005 - MIR3 SINE MIR -12 196 3 188 45 0 0 chr13 46391761 46391783 -73353115 + (T)n Simple_repeat Simple_repeat 1 22 0 7071 82 10 1 chr13 46391887 46392929 -73351969 - L1P LINE L1 -727 5428 4380 202 214 0 143 chr13 46393093 46393191 -73351707 + MIR SINE MIR 35 118 -144 619 293 83 9 chr13 46393541 46393770 -73351128 - MIR SINE MIR -6 256 11 819 324 136 23 chr13 46394149 46394455 -73350443 + L3 LINE CR1 317 690 -887 2439 113 28 22 chr13 46394455 46394817 -73350081 + THE1B LTR MaLR 1 364 0 819 324 136 23 chr13 46394817 46394952 -73349946 + L3 LINE CR1 690 808 -769 317 340 10 0 chr13 46394961 46395061 -73349837 + L3 LINE CR1 1290 1390 -187 263 102 0 20 chr13 46396779 46396828 -73348070 + (TA)n Simple_repeat Simple_repeat 2 49 0 474 300 131 45 chr13 46396955 46397247 -73347651 + L1MEd LINE L1 789 1129 -4990 2315 76 3 3 chr13 46397247 46397550 -73347348 - AluY SINE Alu -8 303 1 474 300 131 45 chr13 46397550 46397677 -73347221 + L1MEd LINE L1 1129 1244 -4875 1373 222 7 7 chr13 46397914 46398198 -73346700 - AluJo SINE Alu -28 284 1 21 0 0 0 chr13 46398298 46398319 -73346579 + AT_rich Low_complexity Low_complexity 1 21 0 188 192 11 62 chr13 46398538 46398715 -73346183 + (CATATA)n Simple_repeat Simple_repeat 6 173 0 216 260 178 14 chr13 46399798 46399871 -73345027 - L2 LINE L2 0 3313 3229 22 0 0 0 chr13 46400555 46400577 -73344321 + AT_rich Low_complexity Low_complexity 1 22 0 562 214 24 8 chr13 46402715 46402841 -73342057 + MIR SINE MIR 79 206 -56 237 65 0 0 chr13 46402993 46403024 -73341874 + (CATA)n Simple_repeat Simple_repeat 2 32 0 274 291 23 0 chr13 46403610 46403696 -73341202 - MER103 DNA DNA -33 133 46 2366 171 60 50 chr13 46405697 46406212 -73338686 + MLT2B1 LTR ERVL 1 520 0 10708 131 11 1 chr13 46406998 46408710 -73336188 - L1PA8A LINE L1 -1377 4769 3041 3791 96 34 26 chr13 46408707 46409426 -73335472 + L1PA8A LINE L1 4781 5487 -644 * 1673 145 37 7 chr13 46410348 46410644 -73334254 - L1PB4 LINE L1 -2 6154 5850 813 194 78 0 chr13 46410645 46410836 -73334062 - L1 LINE L1 -2490 3656 3451 317 314 29 9 chr13 46411977 46412082 -73332816 + MIR SINE MIR 40 146 -62 1847 193 13 80 chr13 46412093 46412381 -73332517 + L1M4 LINE L1 4783 5022 -1124 2627 30 0 0 chr13 46412381 46412676 -73332222 + AluYb8 SINE Alu 22 316 -2 1847 193 13 80 chr13 46412676 46412910 -73331988 + L1M4 LINE L1 5022 5270 -876 2326 109 14 3 chr13 46413315 46413665 -73331233 - L1PB1 LINE L1 0 6151 5798 2163 86 4 4 chr13 46414061 46414362 -73330536 + AluSc SINE Alu 3 303 0 1901 158 32 16 chr13 46414988 46415298 -73329600 - 7SLRNA srpRNA srpRNA -5 315 1 2259 118 0 0 chr13 46417200 46417506 -73327392 + AluSg SINE Alu 1 306 -4 270 0 0 0 chr13 46417827 46417857 -73327041 + (T)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr13 46418254 46418277 -73326621 + AT_rich Low_complexity Low_complexity 1 23 0 3135 81 45 0 chr13 46418465 46418883 -73326015 - LTR3b LTR ERVK 0 437 1 234 264 111 0 chr13 46419048 46419120 -73325778 - MIR SINE MIR -116 146 67 4569 145 6 4 chr13 46419340 46420069 -73324829 + L1P3 LINE L1 2 731 -5144 254 190 35 0 chr13 46421054 46421112 -73323786 + LTR61 LTR ERV1 218 277 -318 1400 174 42 122 chr13 46422412 46422815 -73322083 + MER67D LTR ERV1 1 371 -143 888 157 220 0 chr13 46422830 46423021 -73321877 - Tigger3(Golem) DNA MER2_type -35 2994 2762 4673 24 0 0 chr13 46423021 46423561 -73321337 + L1PA4 LINE L1 5506 6045 -110 7902 135 9 14 chr13 46423664 46426097 -73318801 - L1P LINE L1 -2249 3897 1407 1425 215 3 14 chr13 46426209 46426493 -73318405 - AluJo SINE Alu -31 281 1 4043 150 10 46 chr13 46426493 46427304 -73317594 - L1 LINE L1 -870 5276 4495 3637 226 113 57 chr13 46427305 46428773 -73316125 - L1 LINE L1 -2372 3774 2224 37412 34 1 0 chr13 46428884 46434195 -73310703 + L1PA3 LINE L1 838 6153 -2 736 158 19 6 chr13 46434191 46434349 -73310549 + L1MD1 LINE L1 5283 5442 -917 * 1620 164 26 3 chr13 46434350 46434655 -73310243 + L1MC1 LINE L1 6017 6328 -5 19995 200 32 55 chr13 46434677 46435498 -73309400 + L1MA2 LINE L1 22 860 -6705 1914 129 18 4 chr13 46435498 46435776 -73309122 - AluSx SINE Alu -30 282 1 19995 200 32 55 chr13 46435776 46440190 -73304708 + L1MA2 LINE L1 860 5314 -2251 1290 128 10 15 chr13 46440190 46440386 -73304512 - AluY SINE Alu -17 294 100 19995 200 32 55 chr13 46440386 46440896 -73304002 + L1MA2 LINE L1 5314 5834 -1731 876 125 7 0 chr13 46440892 46441036 -73303862 + L1MA2 LINE L1 6077 6221 -1344 * 4907 111 18 5 chr13 46441138 46441916 -73302982 + L1MA2 LINE L1 6936 7723 0 2921 197 32 65 chr13 46441936 46442098 -73302800 + L1MD1 LINE L1 5444 5610 -632 2261 108 3 3 chr13 46442098 46442403 -73302495 + AluSx SINE Alu 1 305 -7 2921 197 32 65 chr13 46442403 46442616 -73302282 + L1MD1 LINE L1 5610 5828 -414 2545 132 31 24 chr13 46442616 46443041 -73301857 - MSTA LTR MaLR 0 428 1 2921 197 32 65 chr13 46443041 46443360 -73301538 + L1MD1 LINE L1 5828 6112 -130 336 94 0 0 chr13 46443360 46443413 -73301485 + L1MA9 LINE L1 6259 6311 -1 2921 197 32 65 chr13 46443413 46443522 -73301376 + L1MD1 LINE L1 6112 6223 -19 324 0 0 0 chr13 46443746 46443782 -73301116 + (TG)n Simple_repeat Simple_repeat 2 37 0 493 325 16 31 chr13 46444472 46444666 -73300232 + MIR SINE MIR 3 193 -69 225 65 0 0 chr13 46445184 46445215 -73299683 + (CA)n Simple_repeat Simple_repeat 1 31 0 277 240 264 31 chr13 46445620 46445749 -73299149 + MIR SINE MIR 2 160 -102 1615 194 0 14 chr13 46445813 46446096 -73298802 - AluJo SINE Alu -31 281 3 491 303 28 17 chr13 46446113 46446291 -73298607 - MIR SINE MIR -14 248 69 2122 135 0 0 chr13 46448523 46448819 -73296079 + AluSg SINE Alu 1 296 -14 452 267 272 15 chr13 46448827 46449022 -73295876 - MIR SINE MIR -8 254 10 3169 228 61 15 chr13 46449353 46451510 -73293388 - L1MB8 LINE L1 -28 6150 3854 286 290 11 86 chr13 46451548 46451734 -73293164 - L1MA10 LINE L1 -18 6316 6145 9578 177 44 31 chr13 46451738 46453156 -73291742 + L1MA7 LINE L1 2998 4396 -1895 245 29 29 0 chr13 46453156 46453190 -73291708 + (TA)n Simple_repeat Simple_repeat 2 36 0 9578 177 44 31 chr13 46453190 46455014 -73289884 + L1MA7 LINE L1 4396 6285 -6 1390 192 17 10 chr13 46455026 46455317 -73289581 - L1MA9 LINE L1 -164 6148 5856 4696 240 62 14 chr13 46455319 46456704 -73288194 - L1MB8 LINE L1 -2286 3860 2379 2009 147 0 0 chr13 46456704 46457037 -73287861 - AluSq SINE Alu 0 333 1 4696 240 62 14 chr13 46457037 46457314 -73287584 - L1MB8 LINE L1 -3767 2379 2117 6182 73 13 4 chr13 46457390 46458222 -73286676 - L1PA7 LINE L1 -4 6150 5311 4712 191 24 21 chr13 46458447 46458805 -73286093 + L1MA4 LINE L1 4686 5042 -1258 423 139 13 0 chr13 46458805 46458884 -73286014 + MADE1 DNA Mariner 1 80 0 4712 191 24 21 chr13 46458884 46460088 -73284810 + L1MA4 LINE L1 5042 6217 -83 232 225 70 0 chr13 46460400 46460471 -73284427 + L1MA4 LINE L1 6203 6278 -22 7881 144 45 6 chr13 46460497 46462176 -73282722 - Tigger4(Zombi) DNA MER2_type -950 1781 28 2162 237 61 65 chr13 46462188 46462436 -73282462 - L1M4c LINE L1 -4414 2411 2164 2594 26 7 7 chr13 46462436 46462740 -73282158 - AluY SINE Alu -7 304 1 2162 237 61 65 chr13 46462740 46463483 -73281415 - L1M4c LINE L1 -4661 2164 1285 1535 201 3 31 chr13 46463483 46463771 -73281127 + AluJb SINE Alu 3 282 -30 2162 237 61 65 chr13 46463771 46464143 -73280755 - L1M4c LINE L1 -5540 1285 913 353 314 21 7 chr13 46464146 46464286 -73280612 - L1M4c LINE L1 -4711 1935 1794 2546 251 61 35 chr13 46464292 46465128 -73279770 - L1M4c LINE L1 -5639 903 46 341 164 27 55 chr13 46465700 46465773 -73279125 + MLT1A2 LTR MaLR 1 63 -311 180 278 111 0 chr13 46466855 46466927 -73277971 + MIR SINE MIR 54 133 -75 522 318 71 62 chr13 46466930 46467383 -73277515 - LTR67 LTR ERVL -57 500 44 1676 181 7 0 chr13 46469751 46470043 -73274855 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr13 46471564 46471588 -73273310 + AT_rich Low_complexity Low_complexity 1 24 0 1200 165 238 36 chr13 46472968 46473271 -73271627 - THE1B LTR MaLR 0 364 1 359 304 219 0 chr13 46473276 46473477 -73271421 - L2 LINE L2 -920 2394 2150 251 299 75 124 chr13 46474032 46474500 -73270398 + L2 LINE L2 2828 3272 0 184 274 0 59 chr13 46474652 46474703 -73270195 - L2 LINE L2 -15 3257 3210 * 680 250 50 6 chr13 46474672 46474852 -73270046 - MIR SINE MIR -26 236 49 456 19 0 0 chr13 46475004 46475057 -73269841 + (CA)n Simple_repeat Simple_repeat 2 54 0 272 70 23 0 chr13 46475926 46475969 -73268929 + (TG)n Simple_repeat Simple_repeat 1 44 0 24 32 0 0 chr13 46476895 46476926 -73267972 + AT_rich Low_complexity Low_complexity 1 31 0 318 217 0 17 chr13 46476942 46477002 -73267896 - L2 LINE L2 -6 3266 3208 242 345 46 0 chr13 46477216 46477303 -73267595 - MIR SINE MIR -152 110 20 405 287 43 19 chr13 46477592 46477801 -73267097 - L1M4 LINE L1 -2145 4001 3788 270 325 0 88 chr13 46478087 46478201 -73266697 + MER5B DNA MER1_type 1 104 -74 1479 132 5 0 chr13 46478203 46478415 -73266483 + AluSx SINE Alu 1 213 -99 502 117 0 26 chr13 46478462 46478574 -73266324 + AluSx SINE Alu 206 315 0 376 288 58 37 chr13 46478765 46478956 -73265942 + L2 LINE L2 3114 3308 -5 218 336 132 28 chr13 46529149 46529399 -73215499 - L2 LINE L2 -571 2743 2468 280 103 0 46 chr13 46530011 46530066 -73214832 + FLAM SINE Alu 87 133 0 511 250 27 79 chr13 46530201 46530529 -73214369 + L1ME4a LINE L1 5562 5872 -249 206 225 0 0 chr13 46530564 46530604 -73214294 - L2 LINE L2 -16 3297 3258 183 184 0 0 chr13 46530660 46530698 -73214200 + (TA)n Simple_repeat Simple_repeat 1 38 0 358 241 90 0 chr13 46530736 46530869 -73214029 + L1ME4a LINE L1 5975 6119 -2 217 310 0 0 chr13 46531626 46531697 -73213201 - MIR SINE MIR -108 154 84 248 260 240 34 chr13 46531809 46531955 -73212943 - MIR SINE MIR -20 242 67 500 164 10 10 chr13 46532403 46532507 -73212391 - Charlie5 DNA MER1_type 0 2621 2518 1077 245 0 0 chr13 46532529 46532729 -73212169 - MER8 DNA MER2_type 0 239 40 966 99 0 14 chr13 46532740 46532881 -73212017 + MLT2A2 LTR ERVL 315 453 0 691 345 47 21 chr13 46533380 46533762 -73211136 - L1M3c LINE L1 -5749 392 1 472 205 58 85 chr13 46534368 46534592 -73210306 + L1M1 LINE L1 3307 3524 -4041 * 1598 279 73 41 chr13 46534563 46535684 -73209214 + L1MEc LINE L1 541 1732 -4664 416 306 19 6 chr13 46535727 46535884 -73209014 - L1ME1 LINE L1 -63 6103 5945 282 352 39 15 chr13 46535999 46536150 -73208748 - MIR3 SINE MIR -48 160 4 201 183 28 28 chr13 46536489 46536560 -73208338 + (TA)n Simple_repeat Simple_repeat 1 71 0 1367 211 116 22 chr13 46537283 46537653 -73207245 - MLT1D LTR MaLR -72 433 29 485 231 130 6 chr13 46538507 46538676 -73206222 - MER20 DNA MER1_type 0 219 30 225 163 0 0 chr13 46538733 46538782 -73206116 + (TA)n Simple_repeat Simple_repeat 1 49 0 387 261 111 85 chr13 46538825 46539331 -73205567 + L1ME4a LINE L1 5395 5913 -208 1971 101 4 8 chr13 46540920 46541188 -73203710 - AluSx SINE Alu -15 297 31 727 130 0 0 chr13 46541188 46541288 -73203610 - LTR12 LTR ERV1 0 714 615 249 265 31 20 chr13 46541291 46541389 -73203509 - LTR30 LTR ERV1 -80 642 544 1406 97 220 0 chr13 46541389 46541616 -73203282 - LTR12 LTR ERV1 -437 277 1 5468 107 7 1 chr13 46541616 46542390 -73202508 - HERV9 LTR ERV1 0 8399 7622 1339 194 22 19 chr13 46542997 46543265 -73201633 + AluJo SINE Alu 1 269 -43 640 339 60 39 chr13 46543333 46543716 -73201182 + L2 LINE L2 2433 2823 -491 2089 189 63 39 chr13 46544876 46545369 -73199529 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr13 46546414 46546435 -73198463 + AT_rich Low_complexity Low_complexity 1 21 0 1698 181 59 43 chr13 46548168 46548539 -73196359 + L1MCa LINE L1 47 423 -6003 5031 144 28 95 chr13 46548542 46548772 -73196126 + L1MCa LINE L1 597 841 -5586 2041 118 4 0 chr13 46548772 46549076 -73195822 + AluSx SINE Alu 1 305 0 5031 144 28 95 chr13 46549076 46549114 -73195784 + L1MCa LINE L1 841 880 -5547 1380 174 85 26 chr13 46549114 46549384 -73195514 - AluJo SINE Alu -22 290 5 5031 144 28 95 chr13 46549384 46550308 -73194590 + L1MCa LINE L1 880 2154 -4273 897 170 80 48 chr13 46550313 46550435 -73194463 + L1MCa LINE L1 2053 2170 -4256 1818 155 0 11 chr13 46550435 46550712 -73194186 + AluSx SINE Alu 20 293 -19 897 170 80 48 chr13 46550712 46550878 -73194020 + L1MCa LINE L1 2170 2350 -4076 * 3230 154 26 53 chr13 46550860 46551022 -73193876 + L1PBa LINE L1 1 166 -6697 4351 25 4 2 chr13 46551022 46551537 -73193361 + L1PA3 LINE L1 5640 6155 0 3230 154 26 53 chr13 46551537 46551557 -73193341 + L1PBa LINE L1 166 185 -6678 2082 131 13 0 chr13 46551557 46551863 -73193035 + AluSg SINE Alu 1 310 0 3230 154 26 53 chr13 46551863 46552303 -73192595 + L1PBa LINE L1 185 607 -6256 * 4366 124 29 17 chr13 46552300 46553057 -73191841 + L1PBa LINE L1 1316 2081 -4782 2481 206 30 13 chr13 46553063 46553090 -73191808 + L1MCa LINE L1 2700 2725 -3701 198 0 0 0 chr13 46553090 46553112 -73191786 + (TA)n Simple_repeat Simple_repeat 2 23 0 2481 206 30 13 chr13 46553112 46553682 -73191216 + L1MCa LINE L1 2725 3307 -3119 1808 137 3 0 chr13 46553682 46553998 -73190900 + L1PB1 LINE L1 5393 5746 -405 * 8300 105 10 21 chr13 46553983 46555283 -73189615 - L1P LINE L1 -2938 3208 1924 3529 79 28 1 chr13 46555275 46557472 -73187426 + L1PA7 LINE L1 3779 6150 -4 * 2448 116 0 79 chr13 46557489 46557930 -73186968 + L1PB1 LINE L1 5737 6142 -9 2850 256 37 16 chr13 46557995 46558956 -73185942 + L1MC1 LINE L1 2153 3097 -3118 5170 174 44 29 chr13 46558970 46559736 -73185162 + L1MC1 LINE L1 5014 5812 -590 826 126 15 0 chr13 46559736 46559871 -73185027 - MER85 DNA T2_type -1 138 2 5170 174 44 29 chr13 46559871 46560458 -73184440 + L1MC1 LINE L1 5812 6389 -13 3256 140 75 15 chr13 46560482 46561083 -73183815 + MER67C LTR ERV1 74 710 0 727 324 137 26 chr13 46561874 46562674 -73182224 - L2 LINE L2 -31 3282 2405 227 241 181 0 chr13 46565290 46565373 -73179525 + L2 LINE L2 3204 3301 -12 1031 237 57 0 chr13 46567337 46567548 -73177350 - MER58A DNA MER1_type 0 224 2 332 240 62 10 chr13 46567752 46567848 -73177050 + ERVL LTR ERVL 1263 1363 -3633 275 341 37 27 chr13 46567851 46568214 -73176684 + ERVL LTR ERVL 4792 5200 -454 920 292 71 19 chr13 46568531 46568856 -73176042 + LTR16A LTR ERVL 96 437 -13 199 317 37 0 chr13 46568890 46568972 -73175926 + MIR SINE MIR 112 196 -66 1391 248 148 12 chr13 46569258 46569738 -73175160 - HsTC2 DNA Tc2 -86 1812 1268 575 243 68 0 chr13 46569867 46570015 -73174883 + MIR SINE MIR 105 262 0 1938 167 73 6 chr13 46570990 46571180 -73173718 - MLT1A1 LTR MaLR 0 365 189 2510 69 0 0 chr13 46571180 46571484 -73173414 - AluY SINE Alu -7 304 1 1938 167 73 6 chr13 46571484 46571634 -73173264 - MLT1A1 LTR MaLR -176 189 2 236 213 113 107 chr13 46574278 46574428 -73170470 - Charlie8 DNA MER1_type -2240 177 27 21 0 0 0 chr13 46574511 46574532 -73170366 + AT_rich Low_complexity Low_complexity 1 21 0 1150 229 152 9 chr13 46574913 46575241 -73169657 - LOR1b LTR ERV1 -8 453 79 234 167 0 0 chr13 46575233 46575269 -73169629 - LOR1a LTR ERV1 -461 36 1 * 259 327 53 53 chr13 46575694 46575844 -73169054 - MIR3 SINE MIR -55 153 4 2113 138 7 0 chr13 46576572 46576876 -73168022 - AluSx SINE Alu -6 306 1 244 274 132 61 chr13 46577147 46577344 -73167554 + LTR16A LTR ERVL 10 220 -230 * 324 93 0 0 chr13 46577342 46577385 -73167513 - MADE1 DNA Mariner -32 48 6 386 204 10 0 chr13 46577390 46577493 -73167405 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 245 98 24 0 chr13 46577503 46577544 -73167354 + (TCTCCC)n Simple_repeat Simple_repeat 2 43 0 21 57 0 0 chr13 46578304 46578339 -73166559 + AT_rich Low_complexity Low_complexity 1 35 0 1102 261 160 7 chr13 46578554 46579191 -73165707 + L2 LINE L2 2566 3309 -4 300 264 150 61 chr13 46579286 46579358 -73165540 + L1MEd LINE L1 894 958 -5161 2349 86 0 7 chr13 46579358 46579660 -73165238 + AluSc SINE Alu 1 300 -9 300 264 150 61 chr13 46579660 46579867 -73165031 + L1MEd LINE L1 958 1198 -4921 192 191 0 0 chr13 46579922 46579935 -73164963 + A-rich Low_complexity Low_complexity 1 13 -29 1875 154 50 3 chr13 46579935 46580233 -73164665 + AluJb SINE Alu 1 312 0 192 191 0 0 chr13 46580233 46580261 -73164637 + A-rich Low_complexity Low_complexity 12 42 0 238 250 0 11 chr13 46580445 46580537 -73164361 + L1ME LINE L1 826 916 -5154 745 273 71 8 chr13 46580796 46581034 -73163864 - MLT1I LTR MaLR -59 350 98 1984 140 11 0 chr13 46582431 46582716 -73162182 + AluJo SINE Alu 6 293 -19 31973 107 18 57 chr13 46583869 46590274 -73154624 + L1PA7 LINE L1 12 6154 0 333 271 52 10 chr13 46590368 46590464 -73154434 + MIR SINE MIR 48 147 -115 843 170 7 0 chr13 46590630 46590765 -73154133 - Tigger3(Golem) DNA MER2_type -2 3027 2892 2088 125 0 0 chr13 46590768 46591083 -73153815 - AluSg SINE Alu 0 315 1 534 108 0 0 chr13 46591384 46591458 -73153440 + Tigger3(Golem) DNA MER2_type 2893 2966 -63 1020 104 45 0 chr13 46591463 46591617 -73153281 - Tigger3b DNA MER2_type -147 1084 924 2402 133 24 27 chr13 46591618 46591994 -73152904 + THE1C LTR MaLR 1 375 0 9859 125 13 64 chr13 46591994 46593659 -73151239 + THE1C-int LTR MaLR 1 1580 0 2309 130 15 56 chr13 46593659 46594050 -73150848 + THE1C LTR MaLR 1 375 0 3295 143 66 0 chr13 46594051 46594640 -73150258 - Tigger3b DNA MER2_type -309 922 295 6499 208 32 8 chr13 46594643 46596283 -73148615 + L1PA15 LINE L1 1 1451 -5398 2223 173 50 24 chr13 46596283 46596515 -73148383 - MSTA LTR MaLR 0 428 179 2159 110 0 23 chr13 46596515 46596815 -73148083 - AluSq SINE Alu -15 298 6 2223 173 50 24 chr13 46596815 46596999 -73147899 - MSTA LTR MaLR -249 179 1 9481 181 25 2 chr13 46596999 46598613 -73146285 - MSTA-int LTR MaLR 0 1651 1 2566 149 14 30 chr13 46598613 46598726 -73146172 - MSTA LTR MaLR 0 428 315 3184 186 25 73 chr13 46598726 46599452 -73145446 + LTR8 LTR ERV1 1 691 0 2566 149 14 30 chr13 46599452 46599773 -73145125 - MSTA LTR MaLR -113 315 1 9365 201 39 9 chr13 46599773 46601849 -73143049 + L1PA15 LINE L1 1447 3648 -3201 2074 118 0 0 chr13 46601849 46602129 -73142769 + AluSg SINE Alu 30 309 -1 9365 201 39 9 chr13 46602129 46603001 -73141897 + L1PA15 LINE L1 3648 4492 -2357 2029 234 18 4 chr13 46602991 46603492 -73141406 + L1PA15 LINE L1 5381 5888 -961 * 2857 90 3 3 chr13 46603505 46603860 -73141038 - THE1A LTR MaLR 0 355 1 12200 97 16 1 chr13 46603860 46605417 -73139481 - THE1A-int LTR MaLR 0 1580 1 2280 117 14 40 chr13 46605417 46605834 -73139064 - THE1A LTR MaLR 0 375 1 5426 138 22 18 chr13 46605849 46606757 -73138141 + L1PA15 LINE L1 5957 6868 0 1733 203 123 13 chr13 46606732 46607457 -73137441 + L1P LINE L1 4425 5408 -1441 * 1804 232 34 46 chr13 46607486 46608073 -73136825 + L1ME1 LINE L1 5585 6164 -2 205 267 79 30 chr13 46608827 46608928 -73135970 + L2 LINE L2 3161 3266 -47 411 284 71 7 chr13 46608934 46609089 -73135809 - MIR SINE MIR 0 262 98 867 215 6 12 chr13 46609230 46609393 -73135505 + FRAM SINE Alu 1 162 -4 207 69 0 0 chr13 46609885 46609914 -73134984 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr13 46610297 46610326 -73134572 + AT_rich Low_complexity Low_complexity 1 29 0 862 215 32 59 chr13 46610451 46610703 -73134195 - MLT1A1 LTR MaLR -8 420 115 2736 119 33 33 chr13 46610703 46611094 -73133804 - MSTA LTR MaLR 0 428 35 7315 50 15 1 chr13 46611094 46611961 -73132937 + L1PA5 LINE L1 5276 6154 0 2736 119 33 33 chr13 46611961 46611997 -73132901 - MSTA LTR MaLR -392 36 1 597 222 0 17 chr13 46611997 46612114 -73132784 - MLT1A1 LTR MaLR -312 116 2 8594 200 24 25 chr13 46612115 46613789 -73131109 - MLT1A1-int LTR MaLR 0 1735 64 1463 211 51 42 chr13 46613797 46614153 -73130745 - MLT1A1 LTR MaLR -6 359 1 319 300 71 36 chr13 46614514 46614654 -73130244 + L2 LINE L2 1845 1989 -1325 254 300 41 59 chr13 46614850 46615020 -73129878 + L2 LINE L2 2890 3056 -216 1956 208 126 26 chr13 46615022 46615521 -73129377 - MLT1H LTR MaLR 0 549 1 218 366 0 24 chr13 46615696 46615778 -73129120 + L2 LINE L2 3227 3306 -7 180 0 0 0 chr13 46615993 46616013 -73128885 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 2007 105 3 48 chr13 46616015 46616131 -73128767 - AluSx SINE Alu -30 282 162 3930 73 176 32 chr13 46616131 46616732 -73128166 + LTR12 LTR ERV1 1 688 0 2007 105 3 48 chr13 46616732 46616910 -73127988 - AluSx SINE Alu -150 162 1 2169 164 56 10 chr13 46619305 46619714 -73125184 + MSTA LTR MaLR 1 428 0 537 274 218 0 chr13 46619721 46619900 -73124998 - MIR SINE MIR -21 241 24 591 262 61 19 chr13 46620408 46620622 -73124276 - MLT1J2 LTR MaLR -227 223 1 590 231 82 0 chr13 46620624 46620758 -73124140 + MIR SINE MIR 72 216 -46 260 271 93 25 chr13 46620782 46620900 -73123998 - MIR SINE MIR -58 204 79 233 73 146 36 chr13 46620902 46620957 -73123941 - MLT2D LTR ERVL 0 464 404 2288 69 0 75 chr13 46620970 46621303 -73123595 + AluY SINE Alu 2 309 -2 773 199 79 28 chr13 46621303 46621519 -73123379 - MLT2D LTR ERVL -187 227 1 13553 187 51 21 chr13 46623710 46624103 -73120795 + L1MA4 LINE L1 1 381 -6101 6042 12 0 0 chr13 46624103 46624782 -73120116 + L1PA2 LINE L1 5476 6154 -1 13553 187 51 21 chr13 46624782 46630408 -73114490 + L1MA4 LINE L1 381 6190 -292 364 171 80 0 chr13 46630425 46630513 -73114385 + L1MB4 LINE L1 6086 6180 0 415 206 7 20 chr13 46631095 46631241 -73113657 + (CCA)n Simple_repeat Simple_repeat 2 145 0 2294 164 26 17 chr13 46631473 46631895 -73113003 - MSTB LTR MaLR 0 426 1 533 13 120 0 chr13 46632423 46632498 -73112400 + L1PA3 LINE L1 6072 6155 0 9966 174 20 19 chr13 46632522 46635342 -73109556 - L1PA13 LINE L1 -13 6150 3321 403 236 81 0 chr13 46635960 46636083 -73108815 + MIR SINE MIR 103 235 -27 295 290 49 31 chr13 46636496 46636649 -73108249 + MIR SINE MIR 3 159 -49 763 269 25 4 chr13 46636676 46636921 -73107977 + MER20B DNA MER1_type 24 273 -510 614 183 138 29 chr13 46637093 46637333 -73107565 + MER20B DNA MER1_type 518 783 0 998 160 137 18 chr13 46638410 46638813 -73106085 - LTR1B LTR ERV1 0 826 332 2156 163 117 42 chr13 46638814 46639368 -73105530 + LTR1B LTR ERV1 5 600 -226 409 322 163 15 chr13 46639933 46640259 -73104639 + L1ME4a LINE L1 5502 5875 -246 663 180 80 10 chr13 46640261 46640461 -73104437 + Charlie5 DNA MER1_type 2345 2558 -54 504 117 0 0 chr13 46643155 46643232 -73101666 - MADE1 DNA Mariner -3 77 1 1367 335 146 21 chr13 46644123 46645453 -73099445 + L2 LINE L2 1764 3269 -3 242 306 36 45 chr13 46645870 46645981 -73098917 - MER5A DNA MER1_type 0 189 80 761 256 91 41 chr13 46645991 46646077 -73098821 + L1MD3 LINE L1 6842 6922 -1073 195 42 0 0 chr13 46646077 46646101 -73098797 + (CA)n Simple_repeat Simple_repeat 1 24 0 761 256 91 41 chr13 46646101 46647051 -73097847 + L1MD3 LINE L1 6922 7981 -14 186 259 56 0 chr13 46647051 46647105 -73097793 + MER5A DNA MER1_type 131 187 -2 822 305 78 16 chr13 46647611 46647985 -73096913 - MLT1I LTR MaLR -8 401 5 384 273 71 66 chr13 46647987 46648185 -73096713 - MIR SINE MIR -59 203 5 1146 236 78 17 chr13 46648678 46649022 -73095876 + MLT1A1 LTR MaLR 1 365 0 222 290 77 84 chr13 46649699 46649854 -73095044 + L2 LINE L2 2925 3078 -194 5667 29 0 0 chr13 46650745 46651405 -73093493 + L1PA4 LINE L1 5492 6151 -4 1553 145 45 11 chr13 46651829 46652246 -73092652 - MER61D LTR ERV1 -10 424 1 23741 147 17 10 chr13 46652296 46658176 -73086722 + L1PA8A LINE L1 3 5959 -487 2238 173 65 41 chr13 46658172 46658885 -73086013 + L1 LINE L1 3065 3794 -2352 * 384 215 0 13 chr13 46658883 46658962 -73085936 + L1PB4 LINE L1 6008 6085 -71 * 720 244 121 3 chr13 46659004 46659393 -73085505 - L1M4 LINE L1 -2640 3506 3072 261 273 65 0 chr13 46660297 46660374 -73084524 + MIR SINE MIR 61 142 -120 1968 116 3 46 chr13 46660756 46661059 -73083839 - AluSx SINE Alu 0 312 23 290 287 11 0 chr13 46661185 46661272 -73083626 + (TATG)n Simple_repeat Simple_repeat 4 91 0 351 271 52 10 chr13 46661275 46661371 -73083527 - L2 LINE L2 -29 3243 3144 389 288 23 0 chr13 46661634 46661766 -73083132 - LTR67 LTR ERVL -14 543 409 274 372 146 12 chr13 46662533 46662869 -73082029 + L2 LINE L2 2349 2729 -585 249 103 64 13 chr13 46663896 46663974 -73080924 + (TA)n Simple_repeat Simple_repeat 1 82 0 22 56 0 0 chr13 46664048 46664084 -73080814 + AT_rich Low_complexity Low_complexity 1 36 0 846 314 112 38 chr13 46664109 46664717 -73080181 + L2 LINE L2 2098 2750 -564 664 270 76 81 chr13 46664723 46664784 -73080114 + MLT1H1 LTR MaLR 7 67 -488 1156 202 113 58 chr13 46664784 46665130 -73079768 + MLT1A1 LTR MaLR 1 365 0 664 270 76 81 chr13 46665130 46665653 -73079245 + MLT1H1 LTR MaLR 67 543 -12 384 302 224 0 chr13 46665664 46665910 -73078988 + L2 LINE L2 2750 3044 -228 218 244 199 23 chr13 46665926 46666057 -73078841 - L2 LINE L2 -1564 1750 1597 353 310 53 31 chr13 46666151 46666377 -73078521 + LTR33 LTR ERVL 55 285 -236 21 36 0 0 chr13 46667166 46667194 -73077704 + AT_rich Low_complexity Low_complexity 1 28 0 544 299 30 0 chr13 46667238 46667402 -73077496 - MIR SINE MIR -15 247 79 2977 171 82 16 chr13 46667735 46668453 -73076445 + L1MB4 LINE L1 5444 6207 0 216 283 81 46 chr13 46668467 46668554 -73076344 + MIR SINE MIR 58 151 -57 26 50 0 0 chr13 46668751 46668791 -73076107 + AT_rich Low_complexity Low_complexity 1 40 0 242 289 39 53 chr13 46668796 46669004 -73075894 + L1MCc LINE L1 25 229 -6194 1456 178 94 0 chr13 46669118 46669404 -73075494 - MLT1A1 LTR MaLR -52 313 1 542 183 69 104 chr13 46669573 46669775 -73075123 - L1ME2 LINE L1 -2 6162 5968 416 280 66 28 chr13 46670928 46671110 -73073788 + MIR SINE MIR 18 206 -56 248 389 103 15 chr13 46671268 46671471 -73073427 - L2 LINE L2 -254 3059 2839 21 0 0 0 chr13 46672005 46672026 -73072872 + AT_rich Low_complexity Low_complexity 1 21 0 602 338 140 25 chr13 46672065 46672737 -73072161 + L2 LINE L2 2132 2880 -434 319 191 146 0 chr13 46673355 46673444 -73071454 + MER46C DNA MER2_type 12 113 -225 2628 128 32 44 chr13 46673731 46674231 -73070667 - L1MA9 LINE L1 0 6312 5819 1148 92 6 0 chr13 46674231 46674394 -73070504 - L1PA15 LINE L1 -151 6014 5851 638 81 0 0 chr13 46674395 46674481 -73070417 - L1PA15 LINE L1 -519 5647 5562 444 113 14 0 chr13 46674481 46674552 -73070346 - L1MA9 LINE L1 -801 5490 5419 1401 269 86 14 chr13 46675048 46675632 -73069266 + L1MC4a LINE L1 5254 5879 -1929 256 325 116 37 chr13 46676408 46676676 -73068222 + L2 LINE L2 2471 2759 -555 195 309 79 79 chr13 46676964 46677103 -73067795 + L2 LINE L2 3126 3264 -8 3049 136 40 11 chr13 46677105 46677633 -73067265 + L1PA16 LINE L1 5619 6161 -5 279 0 0 0 chr13 46678639 46678670 -73066228 + (CA)n Simple_repeat Simple_repeat 1 31 0 325 186 12 12 chr13 46678677 46678763 -73066135 + CT-rich Low_complexity Low_complexity 2 87 0 180 0 0 0 chr13 46678763 46678783 -73066115 + (CA)n Simple_repeat Simple_repeat 1 20 0 274 274 137 43 chr13 46679730 46679847 -73065051 + L2 LINE L2 3165 3292 -21 1310 208 23 8 chr13 46680077 46680342 -73064556 - MLT1E LTR MaLR -6 587 319 465 273 53 20 chr13 46680343 46680493 -73064405 - MLT1E LTR MaLR -438 155 1 4330 90 21 0 chr13 46680527 46681136 -73063762 - L1PA13 LINE L1 -4 6159 5538 2101 103 43 6 chr13 46682460 46682809 -73062089 + L1PB4 LINE L1 5308 5669 -487 1698 61 18 0 chr13 46682809 46683038 -73061860 + MLT2A1 LTR ERVL 1 233 -211 240 35 0 0 chr13 46683043 46683072 -73061826 + (CATA)n Simple_repeat Simple_repeat 3 31 0 245 125 0 0 chr13 46683093 46683133 -73061765 + MLT2A1 LTR ERVL 397 436 -8 2563 136 22 62 chr13 46683137 46683256 -73061642 + L1PB4 LINE L1 5665 5787 -369 2301 117 0 3 chr13 46683256 46683563 -73061335 + AluSx SINE Alu 1 306 -6 2563 136 22 62 chr13 46683563 46683942 -73060956 + L1PB4 LINE L1 5787 6143 -13 264 274 16 0 chr13 46685290 46685352 -73059546 - L3 LINE CR1 -2 1575 1513 428 275 116 60 chr13 46685488 46685721 -73059177 + MIR SINE MIR 1 246 -16 316 309 224 40 chr13 46686349 46687026 -73057872 + L2 LINE L2 1890 2691 -623 390 334 91 49 chr13 46687140 46687526 -73057372 + L2 LINE L2 2871 3272 0 231 259 0 17 chr13 46687932 46687990 -73056908 - L2 LINE L2 -1 3271 3215 17237 32 5 0 chr13 46688362 46691203 -73053695 + L1PA4 LINE L1 3307 6150 -5 213 350 94 0 chr13 46691229 46691346 -73053552 - L2 LINE L2 -159 3113 2986 190 200 0 0 chr13 46692196 46692226 -73052672 - MIR SINE MIR -23 239 210 * 394 260 203 53 chr13 46692201 46692428 -73052470 - L2 LINE L2 -34 3279 3019 434 274 103 44 chr13 46693678 46694169 -73050729 + L2 LINE L2 2676 3203 -110 2396 90 0 0 chr13 46694420 46694719 -73050179 + AluY SINE Alu 1 299 -12 263 299 39 16 chr13 46694942 46695069 -73049829 + L1ME LINE L1 5522 5651 -470 189 303 45 73 chr13 46695552 46695730 -73049168 + L2 LINE L2 2933 3105 -167 344 267 86 9 chr13 46695944 46696049 -73048849 + L2 LINE L2 3158 3270 -2 187 378 27 27 chr13 46696662 46696773 -73048125 - L2 LINE L2 -1 3312 3202 1344 293 58 12 chr13 46696943 46697020 -73047878 - LTR33 LTR ERVL 0 521 449 2404 103 28 14 chr13 46697020 46697379 -73047519 - THE1B LTR MaLR 0 364 1 1344 293 58 12 chr13 46697379 46697799 -73047099 - LTR33 LTR ERVL -72 449 1 243 336 35 35 chr13 46699137 46699253 -73045645 - L2 LINE L2 -1 3312 3197 434 358 97 35 chr13 46699518 46700199 -73044699 - L2 LINE L2 0 3272 2538 499 330 82 25 chr13 46700208 46700523 -73044375 - L2 LINE L2 -1344 1970 1638 351 293 286 0 chr13 46700846 46700986 -73043912 - MER5A DNA MER1_type -6 183 4 361 281 58 7 chr13 46701035 46701174 -73043724 + L1MC/D LINE L1 4561 4706 -1440 322 301 34 34 chr13 46701307 46701569 -73043329 + L1MC/D LINE L1 4906 5167 -979 340 243 57 29 chr13 46701602 46701742 -73043156 + L1MC/D LINE L1 5564 5707 -2101 919 159 29 12 chr13 46701753 46701923 -73042975 - THE1C LTR MaLR -202 173 1 302 186 35 12 chr13 46702251 46702337 -73042561 + L1 LINE L1 5063 5150 -996 2560 229 94 33 chr13 46702385 46703205 -73041693 - HsTC2 DNA Tc2 -946 952 73 4605 57 34 7 chr13 46703205 46703818 -73041080 - L1PA8 LINE L1 -7 6165 5536 2560 229 94 33 chr13 46703818 46703880 -73041018 - HsTC2 DNA Tc2 -1825 73 16 661 251 105 38 chr13 46704077 46704316 -73040582 - MIR SINE MIR 0 262 8 3272 107 15 0 chr13 46704321 46704789 -73040109 - L1PA15 LINE L1 -4 6161 5687 3321 147 0 9 chr13 46704789 46705699 -73039199 + L1P4 LINE L1 4716 5615 -550 2058 72 52 0 chr13 46705695 46706047 -73038851 - L1PA7 LINE L1 -710 5444 5079 * 5496 65 1 1 chr13 46706047 46706740 -73038158 + L1PA7 LINE L1 5445 6138 -16 545 105 0 12 chr13 46706753 46706839 -73038059 + L1P4 LINE L1 5603 5687 -478 241 298 48 12 chr13 46707046 46707130 -73037768 - MIR SINE MIR -56 206 120 605 231 88 75 chr13 46707183 46707562 -73037336 - MLT1J LTR MaLR -50 461 29 271 259 39 30 chr13 46707565 46707685 -73037213 - MIR SINE MIR -78 130 4 229 219 0 0 chr13 46709122 46709163 -73035735 - MER5A DNA MER1_type -105 84 44 324 341 77 75 chr13 46709875 46710327 -73034571 - L2 LINE L2 -3 3269 2817 22 0 0 0 chr13 46710802 46710824 -73034074 + AT_rich Low_complexity Low_complexity 1 22 0 244 204 20 0 chr13 46710876 46710925 -73033973 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 348 43 0 0 chr13 46711642 46711688 -73033210 + (TG)n Simple_repeat Simple_repeat 1 46 0 1024 222 21 12 chr13 46711856 46712099 -73032799 - MLT1D LTR MaLR 0 505 261 1723 171 28 108 chr13 46712122 46712306 -73032592 + MSTB LTR MaLR 1 198 -228 4343 44 2 0 chr13 46712306 46712830 -73032068 + L1PA7 LINE L1 5617 6141 -13 1723 171 28 108 chr13 46712830 46713060 -73031838 + MSTB LTR MaLR 198 445 19 186 43 0 0 chr13 46713060 46713083 -73031815 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1277 39 0 0 chr13 46713090 46713243 -73031655 - L1PA3 LINE L1 -2 6153 6001 1723 171 28 108 chr13 46713243 46713282 -73031616 + MSTB LTR MaLR 385 426 0 627 164 138 13 chr13 46713299 46713451 -73031447 - MLT1D LTR MaLR -309 196 26 302 261 82 137 chr13 46713463 46713938 -73030960 + L2 LINE L2 1318 1766 -1548 3659 173 25 82 chr13 46713958 46714430 -73030468 - L1MD2 LINE L1 0 6359 5862 306 73 0 0 chr13 46714430 46714471 -73030427 + (TG)n Simple_repeat Simple_repeat 2 42 0 3659 173 25 82 chr13 46714471 46714974 -73029924 - L1MD2 LINE L1 -497 5862 5444 2520 72 0 0 chr13 46714974 46715278 -73029620 - AluY SINE Alu -7 304 1 3659 173 25 82 chr13 46715278 46715334 -73029564 - L1MD2 LINE L1 -915 5444 5386 4345 138 21 0 chr13 46715332 46715985 -73028913 - L1PA16 LINE L1 0 6166 5500 596 324 128 42 chr13 46715989 46716396 -73028502 + L2 LINE L2 1826 2292 -1022 2119 116 3 0 chr13 46716396 46716680 -73028218 - AluSq SINE Alu -22 291 7 596 324 128 42 chr13 46716680 46716813 -73028085 + L2 LINE L2 2292 2412 -902 622 308 73 26 chr13 46716913 46717215 -73027683 - MLT1J2 LTR MaLR -132 318 3 270 221 63 63 chr13 46719776 46719903 -73024995 + MLT1J LTR MaLR 23 149 -362 254 281 133 8 chr13 46720078 46720206 -73024692 + MLT1L LTR MaLR 407 550 -65 559 198 35 93 chr13 46720357 46720529 -73024369 - MLT2C1 LTR ERVL 0 397 236 8283 234 39 13 chr13 46720534 46722524 -73022374 + ERVL LTR ERVL 1553 3650 -2114 450 0 0 0 chr13 46722524 46722574 -73022324 + (CA)n Simple_repeat Simple_repeat 1 50 0 8283 234 39 13 chr13 46722574 46723160 -73021738 + ERVL LTR ERVL 3650 4220 -1544 885 224 64 43 chr13 46723160 46723441 -73021457 + MLT1F LTR MaLR 278 542 0 305 125 18 0 chr13 46723769 46723825 -73021073 + GA-rich Low_complexity Low_complexity 2 58 0 1340 267 70 25 chr13 46725099 46725582 -73019316 - MLT1D LTR MaLR 0 505 1 401 313 67 7 chr13 46726125 46726275 -73018623 - MIR SINE MIR -78 184 26 2116 127 3 0 chr13 46727144 46727443 -73017455 + AluSx SINE Alu 1 300 -12 1485 154 37 197 chr13 46729538 46730063 -73014835 + MER61D LTR ERV1 1 501 0 2350 119 41 36 chr13 46730701 46731063 -73013835 + THE1B LTR MaLR 1 364 0 416 272 73 47 chr13 46732184 46732375 -73012523 - L2 LINE L2 0 3313 3118 45269 39 0 3 chr13 46732385 46738555 -73006343 + L1PA3 LINE L1 1 6155 0 283 269 86 21 chr13 46738536 46738770 -73006128 + L1MC5 LINE L1 7284 7532 -429 * 210 71 0 0 chr13 46738773 46738801 -73006097 + (A)n Simple_repeat Simple_repeat 1 28 0 401 234 229 27 chr13 46739158 46739346 -73005552 - MER46C DNA MER2_type -112 226 1 421 186 289 57 chr13 46739447 46739544 -73005354 - MIR SINE MIR -15 247 174 635 78 0 0 chr13 46739544 46739621 -73005277 - MADE1 DNA Mariner -3 77 1 421 186 289 57 chr13 46739621 46739717 -73005181 - MIR SINE MIR -88 174 9 291 114 0 0 chr13 46740352 46740396 -73004502 + (TG)n Simple_repeat Simple_repeat 2 45 0 261 137 0 20 chr13 46740829 46740880 -73004018 + MIR SINE MIR 95 144 -118 663 189 169 0 chr13 46740915 46741063 -73003835 - MER5A DNA MER1_type -7 182 10 341 247 0 24 chr13 46741079 46741164 -73003734 + MIR SINE MIR 169 251 -11 2159 183 74 69 chr13 46741855 46742369 -73002529 + MLT2B3 LTR ERVL 1 520 -34 438 20 0 0 chr13 46742369 46742420 -73002478 + (CA)n Simple_repeat Simple_repeat 1 51 0 2159 183 74 69 chr13 46742420 46742456 -73002442 + MLT2B3 LTR ERVL 520 554 0 674 230 112 25 chr13 46743059 46743255 -73001643 + MIR SINE MIR 36 248 -14 191 206 48 48 chr13 46743266 46743329 -73001569 + MIR SINE MIR 83 145 -63 187 278 111 48 chr13 46744031 46744157 -73000741 + MIR SINE MIR 26 159 -103 997 230 278 21 chr13 46744161 46744592 -73000306 - MLT1F LTR MaLR 0 542 1 392 272 10 10 chr13 46744592 46744695 -73000203 + MIR SINE MIR 159 261 -1 3168 216 15 10 chr13 46746670 46747254 -72997644 - MER82 DNA MER2_type 0 653 67 2080 76 0 0 chr13 46747254 46747504 -72997394 + L1PA8 LINE L1 5917 6166 -6 1888 130 22 4 chr13 46747507 46747784 -72997114 + AluSx SINE Alu 1 282 -30 231 61 0 0 chr13 46747787 46747820 -72997078 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 304 250 105 0 chr13 46747840 46747916 -72996982 - MER82 DNA MER2_type -569 84 1 994 91 0 23 chr13 46747963 46748095 -72996803 + AluSq/x SINE Alu 1 129 -183 2327 110 0 3 chr13 46748166 46748475 -72996423 - AluSx SINE Alu -4 308 1 806 206 114 26 chr13 46749329 46749557 -72995341 + MIR SINE MIR 13 260 -2 27447 27 2 0 chr13 46749662 46753532 -72991366 - L1PA3 LINE L1 0 6155 2284 864 247 0 6 chr13 46753722 46753900 -72990998 - MER58A DNA MER1_type -6 218 42 3368 164 16 23 chr13 46753901 46754546 -72990352 + L1MB3 LINE L1 5283 5922 -258 1245 148 59 13 chr13 46754613 46754850 -72990048 + L1MB3 LINE L1 5935 6182 -1 30 0 0 0 chr13 46754851 46754881 -72990017 + AT_rich Low_complexity Low_complexity 1 30 0 350 186 43 0 chr13 46754956 46755026 -72989872 - MLT1I LTR MaLR -6 403 331 39100 77 14 9 chr13 46755039 46761137 -72983761 + L1PA6 LINE L1 11 6148 -6 6200 57 0 0 chr13 46761142 46761863 -72983035 + L1PA5 LINE L1 5428 6148 -6 6175 59 1 3 chr13 46761868 46762596 -72982302 + L1PA6 LINE L1 5428 6154 0 377 306 68 61 chr13 46762601 46762912 -72981986 - MLT1I LTR MaLR -72 337 25 2680 118 60 0 chr13 46763002 46763400 -72981498 + L1MA2 LINE L1 5883 6304 0 2171 122 7 0 chr13 46764146 46764442 -72980456 + AluSx SINE Alu 1 298 -14 2469 49 0 13 chr13 46765066 46765370 -72979528 + AluY SINE Alu 1 300 -11 204 40 0 0 chr13 46767068 46767093 -72977805 + (ATG)n Simple_repeat Simple_repeat 2 26 0 1514 217 92 74 chr13 46767362 46767919 -72976979 - MLT1F1 LTR MaLR 0 567 1 841 215 191 57 chr13 46768137 46768756 -72976142 + LTR50 LTR ERVL 1 794 -1 294 87 0 0 chr13 46769544 46769590 -72975308 + (TC)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr13 46769914 46769937 -72974961 + AT_rich Low_complexity Low_complexity 1 23 0 2252 106 0 3 chr13 46770505 46770806 -72974092 + AluSc SINE Alu 1 300 -9 666 168 0 0 chr13 46770997 46771116 -72973782 + MLT2D LTR ERVL 1 119 -295 210 252 25 8 chr13 46771434 46771511 -72973387 + CT-rich Low_complexity Low_complexity 1 78 0 318 324 70 22 chr13 46771547 46771732 -72973166 + L2 LINE L2 2434 2627 -687 1390 217 57 3 chr13 46771732 46772068 -72972830 + MLT2D LTR ERVL 1 354 -60 189 0 0 0 chr13 46772068 46772089 -72972809 + (TC)n Simple_repeat Simple_repeat 2 22 0 774 281 144 22 chr13 46772115 46772529 -72972369 + L2 LINE L2 2607 3061 -211 749 172 23 0 chr13 46772555 46772683 -72972215 - MIR SINE MIR -32 230 100 197 180 20 0 chr13 46772792 46772842 -72972056 + (CATA)n Simple_repeat Simple_repeat 2 52 0 13201 89 12 2 chr13 46772954 46775587 -72969311 + L1PA7 LINE L1 3493 6149 -5 1083 146 47 13 chr13 46777016 46777249 -72967649 + L1MA8 LINE L1 6048 6288 -3 235 294 0 15 chr13 46777362 46777430 -72967468 - MIR SINE MIR -2 260 194 364 310 98 12 chr13 46778350 46778595 -72966303 + MLT1I LTR MaLR 1 266 -143 8960 57 10 3 chr13 46778762 46780718 -72964180 + L1PA7 LINE L1 4177 6149 -5 1083 146 47 13 chr13 46782147 46782380 -72962518 + L1MA8 LINE L1 6048 6288 -3 235 294 0 15 chr13 46782493 46782561 -72962337 - MIR SINE MIR -2 260 194 364 310 98 12 chr13 46783481 46783726 -72961172 + MLT1I LTR MaLR 1 266 -143 687 269 32 15 chr13 46783830 46784168 -72960730 - Charlie2a DNA MER1_type 0 2862 2519 1668 229 123 13 chr13 46784206 46784637 -72960261 - Charlie2a DNA MER1_type -699 2163 1642 2342 101 0 3 chr13 46784637 46784935 -72959963 - AluSq SINE Alu -16 297 1 1668 229 123 13 chr13 46784935 46785120 -72959778 - Charlie2a DNA MER1_type -1220 1642 1479 234 215 0 31 chr13 46785180 46785245 -72959653 - Charlie2b DNA MER1_type -2105 677 615 986 262 170 31 chr13 46785366 46785877 -72959021 - Charlie2b DNA MER1_type -2254 608 27 2387 185 97 62 chr13 46785973 46786605 -72958293 - MLT1E1 LTR MaLR 0 654 1 378 306 45 25 chr13 46786726 46786883 -72958015 - MER5A DNA MER1_type -28 161 2 195 290 32 32 chr13 46787635 46787697 -72957201 - L2 LINE L2 -1 3312 3251 903 154 14 29 chr13 46788364 46788572 -72956326 - L1MA7 LINE L1 -1 6290 6086 627 58 23 0 chr13 46788572 46788659 -72956239 + LOR1-int LTR ERV1 3314 3402 -4718 189 196 0 0 chr13 46789822 46789873 -72955025 + GA-rich Low_complexity Low_complexity 1 51 0 1111 204 61 0 chr13 46789910 46790174 -72954724 + L1MC3 LINE L1 7341 7620 -165 846 203 0 6 chr13 46790174 46790332 -72954566 + Tigger1 DNA MER2_type 1 157 -2261 * 1179 152 24 0 chr13 46790321 46790532 -72954366 + Tigger1 DNA MER2_type 2202 2417 -1 472 169 0 0 chr13 46790533 46790616 -72954282 + L1MC3 LINE L1 7624 7706 -79 393 141 13 13 chr13 46791071 46791149 -72953749 + L1MC3 LINE L1 7700 7777 -8 347 299 36 52 chr13 46791244 46791632 -72953266 + L1ME LINE L1 695 1076 -4994 266 125 0 0 chr13 46791628 46791668 -72953230 - L1P LINE L1 -2286 3860 3821 * 717 140 20 20 chr13 46791726 46791876 -72953022 + L1M1 LINE L1 19 168 -7397 22625 160 20 20 chr13 46792830 46798555 -72946343 - L1PA11 LINE L1 0 6489 756 2136 111 9 19 chr13 46799016 46799209 -72945689 - AluSp SINE Alu 0 313 123 186 43 0 0 chr13 46799209 46799232 -72945666 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2136 111 9 19 chr13 46799232 46799354 -72945544 - AluSp SINE Alu -190 123 1 186 43 0 0 chr13 46800918 46800941 -72943957 + (CAA)n Simple_repeat Simple_repeat 2 24 0 410 90 15 0 chr13 46802032 46802099 -72942799 + MER53 DNA DNA 101 168 -21 2555 145 24 9 chr13 46802727 46803147 -72941751 + MSTB LTR MaLR 1 426 0 1056 215 107 15 chr13 46803169 46803439 -72941459 - MLT1E LTR MaLR -42 551 257 4754 53 13 0 chr13 46803751 46804349 -72940549 - L1PA7 LINE L1 -2 6152 5547 2017 95 0 0 chr13 46804351 46804656 -72940242 + L1P LINE L1 3679 3983 -2163 2234 144 9 0 chr13 46804863 46805197 -72939701 - MER1B DNA MER1_type 0 337 1 312 158 0 0 chr13 46805712 46805769 -72939129 + (CCA)n Simple_repeat Simple_repeat 3 59 0 1723 212 113 53 chr13 46805794 46806318 -72938580 - MLT1F1 LTR MaLR 0 567 13 778 203 6 6 chr13 46806762 46806939 -72937959 + L1MB8 LINE L1 5581 5757 -421 1415 131 8 4 chr13 46806942 46807194 -72937704 + L1MA9 LINE L1 4075 4327 -1819 40551 35 22 1 chr13 46807195 46813219 -72931679 + L1PA2 LINE L1 2 6150 -5 5329 151 32 19 chr13 46813214 46815182 -72929716 + L1MA9 LINE L1 4316 6312 0 * 2381 105 17 8 chr13 46815254 46815606 -72929292 + THE1A LTR MaLR 1 355 0 11677 100 2 1 chr13 46815606 46817183 -72927715 + THE1A-int LTR MaLR 1 1580 0 2599 124 3 6 chr13 46817183 46817539 -72927359 + THE1A LTR MaLR 1 355 0 2160 128 42 39 chr13 46817539 46817915 -72926983 + L1MB8 LINE L1 5782 6161 -17 310 206 40 8 chr13 46818942 46819068 -72925830 + (TA)n Simple_repeat Simple_repeat 1 130 0 366 162 0 0 chr13 46819068 46819142 -72925756 + (TG)n Simple_repeat Simple_repeat 1 74 0 350 246 85 15 chr13 46820068 46820198 -72924700 + L1ME4a LINE L1 5961 6099 -22 1264 205 88 22 chr13 46821368 46821685 -72923213 - MER46C DNA MER2_type 0 338 1 1557 188 3 13 chr13 46822885 46823194 -72921704 + AluJo SINE Alu 1 306 -6 245 207 52 0 chr13 46824146 46824204 -72920694 + MIR3 SINE MIR 127 187 -21 842 203 9 65 chr13 46824414 46824631 -72920267 + MLT1C LTR MaLR 1 205 -262 1285 234 83 41 chr13 46824640 46825003 -72919895 + MER21B LTR ERV1 284 661 -202 405 339 67 0 chr13 46825704 46825869 -72919029 - L3 LINE CR1 -2 1575 1400 1926 168 7 0 chr13 46826444 46826753 -72918145 - AluJb SINE Alu -1 311 1 2000 228 135 26 chr13 46826761 46827296 -72917602 - MLT1E LTR MaLR 0 593 1 214 279 16 0 chr13 46827298 46827359 -72917539 + MER5B DNA MER1_type 111 172 -6 781 191 54 6 chr13 46827415 46827583 -72917315 + MER5B DNA MER1_type 3 178 0 228 330 50 82 chr13 46827747 46828029 -72916869 - L2 LINE L2 -707 2607 2335 7372 57 9 2 chr13 46829489 46830679 -72914219 + L1PA7 LINE L1 4948 6143 -11 33 43 0 0 chr13 46830685 46830732 -72914166 + AT_rich Low_complexity Low_complexity 1 47 0 5620 156 28 9 chr13 46831387 46832333 -72912565 + L1MC1 LINE L1 5371 6333 0 474 333 143 16 chr13 46832430 46832793 -72912105 - LTR67 LTR ERVL -2 555 147 285 317 182 14 chr13 46832950 46833313 -72911585 - L2 LINE L2 -997 2317 1894 218 325 79 16 chr13 46833362 46833488 -72911410 + L2 LINE L2 3170 3303 -10 182 304 0 0 chr13 46833796 46833852 -72911046 - MIR SINE MIR -70 192 137 389 323 118 0 chr13 46835040 46835269 -72909629 + MIR SINE MIR 6 261 -1 1728 187 31 24 chr13 46836372 46836831 -72908067 - MLT2B1 LTR ERVL -5 510 1 279 306 107 0 chr13 46837887 46838008 -72906890 + L2 LINE L2 3180 3313 0 2308 237 24 4 chr13 46838122 46838675 -72906223 + MER90 LTR ERV1 1 564 -11 571 229 176 16 chr13 46838799 46838987 -72905911 - MIR SINE MIR 0 262 45 24 32 0 0 chr13 46840604 46840635 -72904263 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 46840908 46840929 -72903969 + AT_rich Low_complexity Low_complexity 1 21 0 374 235 21 18 chr13 46842894 46843009 -72901889 - MLT1L LTR MaLR 0 615 478 295 302 141 13 chr13 46843486 46843635 -72901263 + MIR SINE MIR 87 254 -8 1460 155 136 124 chr13 46844625 46845044 -72899854 + MSTA LTR MaLR 1 424 -4 522 221 53 15 chr13 46845110 46845241 -72899657 + MIR SINE MIR 1 136 -126 2222 120 0 0 chr13 46845902 46846202 -72898696 - AluY SINE Alu -11 300 1 833 216 129 87 chr13 46846319 46846389 -72898509 - LTR41 LTR ERVL -6 767 701 2373 94 0 3 chr13 46846389 46846698 -72898200 + AluSg SINE Alu 1 308 -2 833 216 129 87 chr13 46846698 46847007 -72897891 - LTR41 LTR ERVL -72 701 372 663 187 39 39 chr13 46847327 46847482 -72897416 - MER3 DNA MER1_type -3 206 52 1273 284 98 5 chr13 46848061 46848449 -72896449 + LTR16C LTR ERVL 68 491 0 2952 93 3 3 chr13 46848859 46849223 -72895675 + THE1B LTR MaLR 1 364 0 1919 98 39 0 chr13 46849595 46849851 -72895047 + L1PA16 LINE L1 5901 6166 0 380 250 196 20 chr13 46849911 46850059 -72894839 + MIR SINE MIR 26 199 -63 300 216 372 74 chr13 46850496 46850557 -72894341 + L2 LINE L2 1706 1748 -1566 2675 121 8 3 chr13 46850557 46850928 -72893970 - THE1C LTR MaLR -2 373 1 300 216 372 74 chr13 46850928 46851301 -72893597 + L2 LINE L2 1748 2270 -1044 326 301 11 11 chr13 46851679 46851772 -72893126 + LTR16C LTR ERVL 265 357 -134 2342 100 0 0 chr13 46852189 46852488 -72892410 + AluSg SINE Alu 1 299 -11 816 208 35 98 chr13 46853154 46853409 -72891489 - MIR SINE MIR -1 261 23 249 83 0 0 chr13 46855437 46855473 -72889425 + (GA)n Simple_repeat Simple_repeat 1 36 0 1643 190 31 0 chr13 46856048 46856337 -72888561 + AluJo SINE Alu 1 298 -14 1532 145 4 0 chr13 46856711 46856939 -72887959 - Tigger3(Golem) DNA MER2_type -1 3028 2800 650 157 0 0 chr13 46857487 46857589 -72887309 + MER45A DNA AcHobo 77 178 0 344 314 121 0 chr13 46858904 46859044 -72885854 - MIR SINE MIR -36 226 70 2269 123 0 3 chr13 46859618 46859926 -72884972 - AluSx SINE Alu -5 307 1 2180 112 0 0 chr13 46860067 46860361 -72884537 + AluSx SINE Alu 1 294 -18 460 289 89 0 chr13 46860405 46860540 -72884358 + MER5B DNA MER1_type 1 147 -31 630 155 113 35 chr13 46860576 46860718 -72884180 - MER5B DNA MER1_type -25 153 1 228 278 130 10 chr13 46860943 46861094 -72883804 + MIR SINE MIR 23 259 -3 1705 97 135 31 chr13 46861125 46861635 -72883263 + MER51A LTR ERV1 1 657 0 431 189 28 47 chr13 46861654 46861760 -72883138 - MIR SINE MIR 0 262 159 285 252 231 28 chr13 46863020 46863163 -72881735 + MIR SINE MIR 78 249 -13 203 211 70 56 chr13 46863402 46863473 -72881425 - MIR SINE MIR -179 83 12 23 0 0 0 chr13 46863716 46863739 -72881159 + AT_rich Low_complexity Low_complexity 1 23 0 2373 97 0 0 chr13 46864362 46864662 -72880236 - AluSg SINE Alu -10 300 1 245 208 21 0 chr13 46864873 46864921 -72879977 + L1MC4a LINE L1 5549 5597 -2211 622 246 86 48 chr13 46864924 46865198 -72879700 + L1MC4a LINE L1 5642 5928 -252 692 193 104 35 chr13 46865294 46865496 -72879402 - MIR SINE MIR -27 235 20 690 255 77 0 chr13 46867056 46867252 -72877646 - LTR16C LTR ERVL -1 490 280 1816 137 16 36 chr13 46867949 46868255 -72876643 - Tigger1 DNA MER2_type 0 2418 2119 * 3543 138 41 2 chr13 46868230 46868794 -72876104 - Tigger1 DNA MER2_type -1662 756 171 266 26 53 0 chr13 46869340 46869378 -72875520 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 2244 90 3 40 chr13 46869384 46869705 -72875193 - AluY SINE Alu -1 310 2 1724 204 19 25 chr13 46869734 46870101 -72874797 + MLT1A1 LTR MaLR 1 365 0 1875 150 0 52 chr13 46870390 46870716 -72874182 + AluSx SINE Alu 4 312 0 1347 13 0 0 chr13 46871140 46871289 -72873609 + AluYa5 SINE Alu 148 296 -15 1218 207 56 77 chr13 46871360 46872003 -72872895 + MER76 LTR ERV 3 688 0 287 242 0 0 chr13 46872063 46872129 -72872769 - MIR SINE MIR -1 261 196 513 204 19 0 chr13 46872136 46872244 -72872654 + MER5C DNA MER1_type 3 112 -212 291 236 90 0 chr13 46872268 46872357 -72872541 + MER5C DNA MER1_type 227 323 -1 * 485 306 50 0 chr13 46872357 46872516 -72872382 - MIR SINE MIR -63 199 33 1200 156 10 0 chr13 46873018 46873210 -72871688 + Tigger1 DNA MER2_type 3 196 -2222 5894 168 12 28 chr13 46873210 46873943 -72870955 - L1PB1 LINE L1 -23 6128 5385 2582 39 0 19 chr13 46873943 46874251 -72870647 - L1PA5 LINE L1 -7 6147 5846 5894 168 12 28 chr13 46874251 46874771 -72870127 - L1PB1 LINE L1 -766 5385 4859 2111 116 3 0 chr13 46874771 46875056 -72869842 - AluSq SINE Alu -27 286 1 5894 168 12 28 chr13 46875056 46875936 -72868962 - L1PB1 LINE L1 -1292 4859 4027 389 132 0 0 chr13 46876209 46876262 -72868636 + MER63 DNA MER1_type 685 737 -99 24 0 0 0 chr13 46876500 46876524 -72868374 + AT_rich Low_complexity Low_complexity 1 24 0 266 322 141 8 chr13 46877591 46877712 -72867186 + L2 LINE L2 3136 3272 0 1773 203 39 107 chr13 46878836 46879279 -72865619 + MLT1D LTR MaLR 2 403 -102 1963 141 0 4 chr13 46879279 46879556 -72865342 + AluSx SINE Alu 14 289 -23 1773 203 39 107 chr13 46879556 46879653 -72865245 + MLT1D LTR MaLR 403 505 0 192 77 0 0 chr13 46880522 46880548 -72864350 + (CA)n Simple_repeat Simple_repeat 1 26 0 1461 199 57 3 chr13 46880838 46881120 -72863778 - AluJo SINE Alu -10 302 6 1683 182 10 7 chr13 46881134 46881431 -72863467 - AluJb SINE Alu -14 298 1 460 271 15 70 chr13 46882391 46882590 -72862308 - MER5A DNA MER1_type -1 188 1 295 198 35 48 chr13 46883562 46883697 -72861201 + LTR16A1 LTR ERVL 360 457 0 562 209 72 43 chr13 46884122 46884261 -72860637 - MLT1F1 LTR MaLR -396 171 29 1657 273 71 23 chr13 46885214 46885883 -72859015 + L1MC4a LINE L1 5221 5399 -747 34 65 0 0 chr13 46885981 46886043 -72858855 + AT_rich Low_complexity Low_complexity 1 62 0 10447 163 30 44 chr13 46886110 46888076 -72856822 + L1PB4 LINE L1 2975 4968 -1188 1644 66 0 0 chr13 46888076 46888273 -72856625 - L1PA7 LINE L1 -2 6152 5956 10447 163 30 44 chr13 46888273 46888763 -72856135 + L1PB4 LINE L1 4968 5464 -692 2407 58 7 16 chr13 46888763 46889073 -72855825 + AluY SINE Alu 1 307 -4 10447 163 30 44 chr13 46889073 46889290 -72855608 + L1PB4 LINE L1 5464 5683 -473 2375 89 0 3 chr13 46889290 46889592 -72855306 + AluSx SINE Alu 10 310 -2 10447 163 30 44 chr13 46889592 46889818 -72855080 + L1PB4 LINE L1 5683 5911 -245 2475 69 7 0 chr13 46889818 46890122 -72854776 + AluSq SINE Alu 1 306 -7 10447 163 30 44 chr13 46890122 46890477 -72854421 + L1PB4 LINE L1 5911 6156 0 219 167 0 0 chr13 46890856 46890898 -72854000 + CT-rich Low_complexity Low_complexity 1 42 0 2430 74 0 13 chr13 46891943 46892255 -72852643 - AluY SINE Alu -3 308 1 1883 172 0 10 chr13 46893025 46893339 -72851559 - AluJb SINE Alu 0 312 2 180 0 0 0 chr13 46893654 46893674 -72851224 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr13 46894553 46894582 -72850316 + AT_rich Low_complexity Low_complexity 1 29 0 399 21 0 0 chr13 46895089 46895137 -72849761 + (TG)n Simple_repeat Simple_repeat 2 49 0 1024 199 0 17 chr13 46895144 46895325 -72849573 + MER5B DNA MER1_type 1 178 0 800 189 0 7 chr13 46895483 46895631 -72849267 + MLT2A2 LTR ERVL 307 453 0 425 157 0 0 chr13 46895631 46895701 -72849197 + MLT1D LTR MaLR 390 459 -46 272 330 102 0 chr13 46895873 46895961 -72848937 - MER5A DNA MER1_type -80 109 13 201 178 44 0 chr13 46896052 46896097 -72848801 + L2 LINE L2 3160 3206 -107 1750 135 58 0 chr13 46896693 46896953 -72847945 - AluSx SINE Alu -37 275 1 638 299 44 57 chr13 46897188 46897506 -72847392 + L1MEc LINE L1 35 348 -6048 2161 132 47 47 chr13 46897525 46897889 -72847009 - THE1B LTR MaLR 0 364 1 12517 91 10 8 chr13 46897889 46899465 -72845433 - THE1B-int LTR MaLR 0 1580 1 2002 149 57 34 chr13 46899465 46899814 -72845084 - THE1B LTR MaLR 0 364 8 1526 288 59 43 chr13 46899818 46900489 -72844409 + L1MEc LINE L1 390 1084 -5312 2214 147 134 11 chr13 46900489 46900869 -72844029 - MSTA LTR MaLR 0 428 2 1526 288 59 43 chr13 46900869 46901215 -72843683 + L1MEc LINE L1 1084 1423 -4973 2361 180 83 7 chr13 46901736 46902169 -72842729 - MER82 DNA MER2_type 0 653 188 327 269 123 36 chr13 46902380 46902599 -72842299 - LTR40c LTR ERVL -59 406 169 1890 151 3 25 chr13 46903565 46903884 -72841014 + AluSx SINE Alu 1 312 0 1065 149 55 11 chr13 46904111 46904292 -72840606 - MER5A DNA MER1_type 0 189 1 483 158 14 7 chr13 46905392 46905481 -72839417 + MER72 LTR ERV1 586 881 -42 1161 233 51 34 chr13 46905571 46905927 -72838971 - LTR16B LTR ERVL -100 364 3 793 184 8 0 chr13 46906405 46906530 -72838368 + FLAM_C SINE Alu 2 127 -6 2464 175 76 12 chr13 46906651 46907136 -72837762 - MER34 LTR ERV1 0 542 27 1378 210 79 19 chr13 46907829 46908196 -72836702 - L1MC4 LINE L1 -1 8041 7653 2470 51 0 0 chr13 46910358 46910653 -72834245 - AluY SINE Alu -16 295 1 219 36 0 0 chr13 46911222 46911250 -72833648 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 432 0 0 0 chr13 46912053 46912101 -72832797 + (TG)n Simple_repeat Simple_repeat 2 49 0 1884 107 19 15 chr13 46912118 46912389 -72832509 - THE1B LTR MaLR -92 272 1 688 300 46 29 chr13 46913236 46913586 -72831312 + L2 LINE L2 2358 2713 -601 2530 135 22 24 chr13 46914177 46914559 -72830339 + L1MC1 LINE L1 5442 5824 -509 2389 98 0 0 chr13 46914559 46914865 -72830033 + AluSg SINE Alu 1 306 -4 2530 135 22 24 chr13 46914865 46914896 -72830002 + L1MC1 LINE L1 5824 5854 -479 1993 139 10 0 chr13 46914897 46915185 -72829713 + AluSx SINE Alu 2 292 -20 1349 119 44 9 chr13 46916269 46916495 -72828403 + L1MA5A LINE L1 6064 6297 0 2336 111 0 0 chr13 46916543 46916841 -72828057 + AluSx SINE Alu 1 298 -14 307 299 95 54 chr13 46916989 46917084 -72827814 - L2 LINE L2 -3 3269 3164 3229 174 30 2 chr13 46917084 46917625 -72827273 + MER74A LTR ERVL 1 556 -2 307 299 95 54 chr13 46917625 46917676 -72827222 - L2 LINE L2 -108 3164 3117 2227 100 3 3 chr13 46918112 46918403 -72826495 + AluSx SINE Alu 1 291 -21 233 284 49 12 chr13 46918410 46918491 -72826407 + MIR3 SINE MIR 105 188 -20 1593 188 74 56 chr13 46918525 46918903 -72825995 + MLT1B LTR MaLR 1 385 -5 363 245 117 42 chr13 46920295 46920446 -72824452 + MIR3 SINE MIR 22 187 -21 50 31 0 0 chr13 46920495 46920559 -72824339 + AT_rich Low_complexity Low_complexity 1 64 0 1712 125 80 21 chr13 46920685 46920974 -72823924 + AluSx SINE Alu 1 306 -6 1730 213 136 5 chr13 46920993 46921406 -72823492 + MLT1C LTR MaLR 1 467 0 378 224 128 32 chr13 46921714 46921839 -72823059 + LTR67 LTR ERVL 414 550 -7 348 296 91 8 chr13 46921988 46922120 -72822778 - MIR SINE MIR -80 182 40 1528 212 115 15 chr13 46923222 46923632 -72821266 + L1ME3 LINE L1 5564 6016 -146 229 156 0 44 chr13 46923632 46923677 -72821221 + MER3 DNA MER1_type 12 54 -155 515 92 0 0 chr13 46923729 46923805 -72821093 + L1PA11 LINE L1 6099 6174 0 2361 73 0 3 chr13 46923833 46924134 -72820764 - AluY SINE Alu -11 300 1 506 313 121 0 chr13 46924317 46924499 -72820399 - MIR SINE MIR 0 262 59 10212 76 10 1 chr13 46924616 46926683 -72818215 + L1PA7 LINE L1 4079 6154 0 272 207 86 159 chr13 46927093 46927489 -72817409 - MLT1K LTR MaLR -5 583 217 660 319 22 0 chr13 46927687 46927869 -72817029 + MIR SINE MIR 61 246 -16 2598 68 0 0 chr13 46928850 46929160 -72815738 - AluY SINE Alu -1 310 1 220 263 30 61 chr13 46929296 46929395 -72815503 - L3 LINE CR1 -81 1496 1401 1526 136 6 196 chr13 46929553 46930037 -72814861 + MER57A LTR ERV1 12 403 0 198 347 116 0 chr13 46930038 46930133 -72814765 - L3 LINE CR1 -394 1183 1078 291 175 0 0 chr13 46930842 46930899 -72813999 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1554 180 24 20 chr13 46930916 46931210 -72813688 + AluJo SINE Alu 1 295 -17 552 194 15 179 chr13 46931992 46932129 -72812769 - MER5B DNA MER1_type -7 171 74 911 144 0 8 chr13 46932129 46932261 -72812637 - FLAM_C SINE Alu -2 131 1 552 194 15 179 chr13 46932261 46932319 -72812579 - MER5B DNA MER1_type -104 74 8 1838 180 0 7 chr13 46932499 46932804 -72812094 + AluJb SINE Alu 2 304 -8 2234 138 0 0 chr13 46932901 46933212 -72811686 + AluSx SINE Alu 1 311 -1 37274 98 10 9 chr13 46933295 46939437 -72805461 + L1PA6 LINE L1 11 6153 -1 732 286 41 39 chr13 46939454 46939886 -72805012 + L1MC4a LINE L1 4735 5170 -976 1769 168 3 3 chr13 46939886 46940171 -72804727 + AluJb SINE Alu 1 285 -27 732 286 41 39 chr13 46940171 46940245 -72804653 + L1MC4a LINE L1 5170 5242 -904 3469 224 86 91 chr13 46940281 46941949 -72802949 + L1MC4a LINE L1 5276 6935 -873 16784 114 106 6 chr13 46941956 46944647 -72800251 + L1PB1 LINE L1 1 2959 -3904 1392 121 5 0 chr13 46944647 46944837 -72800061 - AluSp SINE Alu -8 305 115 2011 119 25 7 chr13 46944996 46945281 -72799617 + AluSx SINE Alu 1 290 -22 11661 199 78 19 chr13 46945281 46946165 -72798733 + L1PB1 LINE L1 2993 3823 -3039 185 0 40 0 chr13 46946165 46946190 -72798708 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 11661 199 78 19 chr13 46946190 46947115 -72797783 + L1PB1 LINE L1 3823 4692 -2170 1939 156 0 0 chr13 46947115 46947423 -72797475 + AluSx SINE Alu 1 308 0 11661 199 78 19 chr13 46947423 46948059 -72796839 + L1PB1 LINE L1 4692 5289 -1573 2579 65 0 0 chr13 46948059 46948365 -72796533 + AluY SINE Alu 1 306 -5 11661 199 78 19 chr13 46948365 46948725 -72796173 + L1PB1 LINE L1 5289 5967 -895 1128 148 46 60 chr13 46948725 46948942 -72795956 + AluSg/x SINE Alu 83 296 -16 5240 86 27 11 chr13 46948944 46949696 -72795202 + L1PB1 LINE L1 5973 6736 -131 1350 75 0 70 chr13 46949694 46949895 -72795003 + L1PB1 LINE L1 5965 6151 0 * 1176 240 168 76 chr13 46949925 46950014 -72794884 + L1MC4 LINE L1 6999 7078 -964 482 24 107 155 chr13 46950014 46950042 -72794856 + MADE1 DNA Mariner 1 29 -51 2584 51 0 0 chr13 46950042 46950337 -72794561 + AluY SINE Alu 1 295 -16 482 24 107 155 chr13 46950337 46950392 -72794506 + MADE1 DNA Mariner 29 80 0 1176 240 168 76 chr13 46950392 46951064 -72793834 + L1MC4 LINE L1 7078 7830 -212 739 243 16 57 chr13 46952299 46952546 -72792352 + L1MC4 LINE L1 7804 8040 -2 2695 142 26 19 chr13 46954027 46954456 -72790442 - MSTB1 LTR MaLR 0 432 1 197 95 0 48 chr13 46954770 46954812 -72790086 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 946 154 0 0 chr13 46955071 46955214 -72789684 + FLAM_C SINE Alu 1 143 0 401 275 132 6 chr13 46955229 46955396 -72789502 + MIR SINE MIR 20 207 -55 642 332 33 26 chr13 46955573 46955844 -72789054 + L3 LINE CR1 1220 1492 -85 433 189 72 36 chr13 46955859 46955970 -72788928 + L2 LINE L2 3197 3311 -2 721 205 39 0 chr13 46955975 46956102 -72788796 + FLAM_A SINE Alu 2 133 0 449 160 8 34 chr13 46956109 46956228 -72788670 + GA-rich Low_complexity Low_complexity 2 117 0 204 40 0 0 chr13 46956231 46956256 -72788642 + (GGGAA)n Simple_repeat Simple_repeat 2 26 0 373 298 43 0 chr13 46956599 46956693 -72788205 + L2 LINE L2 3208 3305 -8 456 254 62 31 chr13 46956811 46956941 -72787957 + L2 LINE L2 3139 3272 0 2480 60 3 0 chr13 46957188 46957489 -72787409 - AluY SINE Alu -9 302 1 4201 80 58 41 chr13 46958570 46959160 -72785738 + MER4A LTR ERV1 1 600 0 454 248 113 14 chr13 46959887 46960028 -72784870 - MER5A DNA MER1_type 0 189 35 316 293 150 0 chr13 46960767 46960907 -72783991 - MARNA DNA Mariner -164 422 262 2074 129 0 20 chr13 46960910 46961213 -72783685 + AluSx SINE Alu 1 297 -15 2342 93 0 0 chr13 46961670 46961960 -72782938 + AluSg SINE Alu 1 290 -20 903 45 0 75 chr13 46962032 46962165 -72782733 + AluY SINE Alu 188 310 -1 2073 110 3 29 chr13 46962221 46962530 -72782368 + AluSx SINE Alu 1 301 -11 705 174 66 114 chr13 46962842 46963059 -72781839 + L1MC5 LINE L1 7342 7539 -422 2020 135 0 13 chr13 46963059 46963362 -72781536 + AluSx SINE Alu 1 299 -13 705 174 66 114 chr13 46963362 46963477 -72781421 + L1MC5 LINE L1 7539 7658 -303 1008 83 15 8 chr13 46963477 46963610 -72781288 + AluSq/x SINE Alu 1 134 -179 1406 210 101 24 chr13 46963714 46964128 -72780770 - L1MD2 LINE L1 -253 6106 5661 1216 298 27 33 chr13 46964128 46964448 -72780450 - L1MC4 LINE L1 -1095 6947 6629 2300 101 0 3 chr13 46964448 46964755 -72780143 - AluSx SINE Alu -6 306 1 1216 298 27 33 chr13 46964755 46964917 -72779981 - L1MC4 LINE L1 -1413 6629 6468 2261 171 97 7 chr13 46964918 46965340 -72779558 - LOR1b LTR ERV1 -1 460 1 634 154 0 0 chr13 46965340 46965431 -72779467 - LOR1b-int LTR ERV1 0 8120 8030 * 1603 99 41 78 chr13 46965430 46965724 -72779174 - LOR1-int LTR ERV1 -2056 6064 5782 * 10028 105 32 21 chr13 46965704 46967302 -72777596 - LOR1-int LTR ERV1 -2596 5524 3908 3833 121 66 19 chr13 46967296 46968536 -72776362 - LOR1-int LTR ERV1 -4798 3322 1984 * 276 30 0 0 chr13 46968585 46968618 -72776280 + (TCC)n Simple_repeat Simple_repeat 1 33 0 1692 210 47 24 chr13 46968734 46968852 -72776046 + L1M4 LINE L1 3791 3905 -2241 1674 186 0 26 chr13 46968852 46969158 -72775740 + AluJo SINE Alu 1 298 -14 2324 112 3 0 chr13 46969160 46969464 -72775434 + AluSp SINE Alu 1 305 -8 1692 210 47 24 chr13 46969464 46969766 -72775132 + L1M4 LINE L1 3905 4224 -1922 1926 161 15 42 chr13 46969768 46970178 -72774720 + MSTB1 LTR MaLR 1 399 -33 2324 95 117 22 chr13 46970193 46970602 -72774296 - LTR7 LTR ERV1 -2 448 1 2938 235 43 25 chr13 46970605 46971578 -72773320 + L1M4 LINE L1 4214 5210 -936 1950 138 27 7 chr13 46971578 46971875 -72773023 + AluSx SINE Alu 1 303 -9 2938 235 43 25 chr13 46971875 46971999 -72772899 + L1M4 LINE L1 5210 5330 -816 1075 152 184 8 chr13 46972110 46972366 -72772532 + L1MD1 LINE L1 5920 6220 -22 1565 97 0 0 chr13 46972488 46972684 -72772214 + AluSg SINE Alu 1 196 -114 487 161 0 21 chr13 46972851 46972944 -72771954 - THE1B LTR MaLR -273 91 1 267 295 47 54 chr13 46973219 46973348 -72771550 - L2 LINE L2 -12 3260 3133 909 363 50 21 chr13 46973495 46974256 -72770642 - L2 LINE L2 -1607 1707 925 2441 59 0 0 chr13 46974873 46975163 -72769735 + AluY SINE Alu 2 291 -20 44 20 0 0 chr13 46975243 46975294 -72769604 + AT_rich Low_complexity Low_complexity 1 51 0 1570 208 211 69 chr13 46975294 46976075 -72768823 + L1MC4 LINE L1 6935 7844 -198 2136 109 0 0 chr13 46976075 46976358 -72768540 + AluY SINE Alu 13 295 -16 1570 208 211 69 chr13 46976358 46976414 -72768484 + L1MC4 LINE L1 7844 7891 -151 410 138 0 12 chr13 46976792 46976872 -72768026 - MADE1 DNA Mariner -1 79 1 444 311 63 30 chr13 46976936 46977030 -72767868 - L1MEc LINE L1 -3207 3008 2919 1633 171 10 24 chr13 46977030 46977322 -72767576 + AluJo SINE Alu 1 288 -24 444 311 63 30 chr13 46977322 46977497 -72767401 - L1MEc LINE L1 -3296 2919 2730 2018 133 0 26 chr13 46977855 46978163 -72766735 + AluSx SINE Alu 1 300 -12 312 179 95 0 chr13 46978295 46978379 -72766519 + L1MC4a LINE L1 5826 5917 -1891 882 202 66 10 chr13 46978444 46978642 -72766256 + MER3 DNA MER1_type 1 209 0 311 164 55 0 chr13 46979221 46979276 -72765622 - MIR SINE MIR -111 151 94 23 33 0 0 chr13 46979353 46979383 -72765515 + AT_rich Low_complexity Low_complexity 1 30 0 769 145 15 8 chr13 46979386 46979517 -72765381 + AluSq/x SINE Alu 1 132 -181 295 250 40 13 chr13 46979650 46979726 -72765172 - L2 LINE L2 -3 3269 3192 198 345 56 28 chr13 46979767 46979909 -72764989 - MER5A DNA MER1_type -28 161 16 233 116 0 23 chr13 46980138 46980181 -72764717 + (TCTCCC)n Simple_repeat Simple_repeat 6 47 0 9068 115 87 7 chr13 46980200 46981846 -72763052 - LOR1b-int LTR ERV1 -6141 1979 203 1873 184 24 3 chr13 46981850 46982219 -72762679 - LOR1b-int LTR ERV1 -7743 377 1 2467 143 40 22 chr13 46982219 46982672 -72762226 - LOR1b LTR ERV1 0 461 1 780 218 28 38 chr13 46982714 46982925 -72761973 - MER20 DNA MER1_type -1 218 10 566 234 38 0 chr13 46982968 46983126 -72761772 - L1MEc LINE L1 -4666 1730 1567 909 247 101 25 chr13 46983140 46983703 -72761195 - L1MEc LINE L1 -4981 1224 619 270 298 0 0 chr13 46983734 46983818 -72761080 - L2 LINE L2 -407 2906 2823 * 492 227 0 9 chr13 46983812 46983922 -72760976 - L2 LINE L2 -1416 1898 1790 544 193 47 115 chr13 46983936 46984088 -72760810 - MER58C DNA MER1_type -2240 180 42 1998 166 0 0 chr13 46984088 46984390 -72760508 + AluSx SINE Alu 1 302 -10 544 193 47 115 chr13 46984390 46984429 -72760469 - MER58C DNA MER1_type -2378 42 2 492 247 127 67 chr13 46984480 46984747 -72760151 - L2 LINE L2 -1519 1795 1513 27 0 0 0 chr13 46984754 46984781 -72760117 + AT_rich Low_complexity Low_complexity 1 27 0 36 94 0 0 chr13 46985466 46985572 -72759326 + AT_rich Low_complexity Low_complexity 1 106 0 236 266 55 9 chr13 46985576 46985685 -72759213 - L1ME LINE L1 -236 5885 5772 199 407 37 19 chr13 46985866 46985974 -72758924 + L2 LINE L2 3151 3260 -12 21 36 0 0 chr13 46986023 46986051 -72758847 + AT_rich Low_complexity Low_complexity 1 28 0 390 294 131 31 chr13 46987233 46987583 -72757315 - L2 LINE L2 -1158 2156 1772 225 379 76 11 chr13 46988313 46988590 -72756308 - L2 LINE L2 -2390 924 630 856 138 83 22 chr13 46989118 46989299 -72755599 - LTR47A LTR ERVL 0 452 261 1311 173 9 35 chr13 46990764 46991104 -72753794 - MER31A LTR ERV1 -1 484 37 606 131 0 0 chr13 46991104 46991188 -72753710 + FLAM_C SINE Alu 37 120 -23 198 167 0 0 chr13 46991194 46991230 -72753668 + (CACG)n Simple_repeat Simple_repeat 3 38 0 253 0 0 0 chr13 46991292 46991322 -72753576 - MER67A LTR ERV1 -513 30 1 1512 201 92 127 chr13 46991342 46992287 -72752611 - L1MC5 LINE L1 -111 7850 6952 278 50 25 0 chr13 46992287 46992327 -72752571 + (TG)n Simple_repeat Simple_repeat 1 41 0 1512 201 92 127 chr13 46992327 46992712 -72752186 - L1MC5 LINE L1 -1009 6952 6555 3622 149 60 6 chr13 46993234 46993896 -72751002 - MER44D DNA MER2_type 0 705 8 387 0 0 0 chr13 46993901 46993944 -72750954 + (TG)n Simple_repeat Simple_repeat 2 44 0 2105 142 7 0 chr13 46994143 46994314 -72750584 - AluSx SINE Alu -8 304 129 2234 109 13 0 chr13 46994314 46994617 -72750281 - AluSq SINE Alu -6 307 1 2105 142 7 0 chr13 46994617 46994747 -72750151 - AluSx SINE Alu -183 129 1 440 274 155 23 chr13 46995282 46995501 -72749397 - MIR SINE MIR -7 255 8 22 35 0 0 chr13 46995791 46995820 -72749078 + AT_rich Low_complexity Low_complexity 1 29 0 291 54 0 0 chr13 46995820 46995857 -72749041 + (CA)n Simple_repeat Simple_repeat 2 38 0 1539 179 3 69 chr13 46997054 46997372 -72747526 - AluJo SINE Alu -15 297 1 186 350 33 0 chr13 46997465 46997525 -72747373 - MIR SINE MIR -193 69 8 2075 86 0 0 chr13 46997584 46997852 -72747046 - AluY SINE Alu -8 303 36 205 211 0 0 chr13 46997923 46997961 -72746937 + (TA)n Simple_repeat Simple_repeat 2 39 0 407 247 24 0 chr13 46998118 46998203 -72746695 + MIR SINE MIR 2 88 -174 1328 161 18 5 chr13 46998207 46998424 -72746474 - AluJo SINE Alu -8 304 85 2304 86 0 17 chr13 46998646 46998948 -72745950 + AluSq SINE Alu 1 297 -16 1252 163 303 57 chr13 46999136 46999591 -72745307 - MLT1F1 LTR MaLR 0 567 1 364 278 105 25 chr13 46999788 46999950 -72744948 - L2 LINE L2 -1292 2022 1848 2225 88 7 16 chr13 47000368 47000675 -72744223 + AluY SINE Alu 1 304 -7 1125 88 27 0 chr13 47000862 47001009 -72743889 + AluSq/x SINE Alu 1 151 -161 1212 269 83 44 chr13 47001010 47001468 -72743430 + MLT1E2 LTR MaLR 149 626 0 675 244 115 11 chr13 47001546 47001816 -72743082 - MER5C DNA MER1_type -26 298 1 1895 107 22 88 chr13 47002114 47002318 -72742580 - THE1B LTR MaLR 0 364 167 2060 109 7 23 chr13 47002318 47002620 -72742278 + AluSx SINE Alu 10 306 -6 1895 107 22 88 chr13 47002620 47002777 -72742121 - THE1B LTR MaLR -197 167 1 631 269 88 36 chr13 47003040 47003515 -72741383 - L1ME4a LINE L1 -15 6106 5607 198 71 0 0 chr13 47003671 47003699 -72741199 + (TG)n Simple_repeat Simple_repeat 2 29 0 2558 55 0 13 chr13 47003722 47004032 -72740866 - AluSg SINE Alu -4 306 1 3343 57 11 2 chr13 47004644 47005080 -72739818 + L1PA7 LINE L1 5715 6154 0 1747 180 6 6 chr13 47005285 47005596 -72739302 + AluJb SINE Alu 1 311 -1 2045 139 33 0 chr13 47006130 47006432 -72738466 - AluSx SINE Alu 0 312 1 900 134 0 35 chr13 47006946 47007088 -72737810 + FLAM_C SINE Alu 1 137 -6 232 159 0 0 chr13 47007098 47007142 -72737756 + MER77 LTR ERV1 278 321 -284 433 320 50 70 chr13 47007142 47007545 -72737353 + L1 LINE L1 9 403 -5488 1388 150 35 0 chr13 47007652 47007879 -72737019 - MER46A DNA MER2_type 0 236 2 2805 214 76 8 chr13 47007883 47008812 -72736086 + L1 LINE L1 2888 3880 -2090 * 7100 78 11 7 chr13 47008809 47009886 -72735012 + L1P LINE L1 4303 5383 -763 181 345 17 0 chr13 47010033 47010091 -72734807 - L2 LINE L2 -2923 391 333 2136 109 0 10 chr13 47010206 47010499 -72734399 + AluSc SINE Alu 1 290 -19 2208 144 19 16 chr13 47010621 47010995 -72733903 + THE1C LTR MaLR 1 375 0 191 146 24 0 chr13 47011140 47011181 -72733717 + GA-rich Low_complexity Low_complexity 1 42 0 342 229 143 57 chr13 47011309 47011449 -72733449 + L1ME4a LINE L1 5967 6118 -3 720 278 69 33 chr13 47011953 47012259 -72732639 - MLT1I LTR MaLR 0 409 93 2075 111 0 34 chr13 47012451 47012749 -72732149 + AluSg SINE Alu 1 288 -22 201 300 91 45 chr13 47012824 47012934 -72731964 - MIR SINE MIR -30 232 118 2254 69 0 4 chr13 47013044 47013318 -72731580 + AluY SINE Alu 19 291 -20 493 266 135 60 chr13 47013566 47014002 -72730896 + MLT1H LTR MaLR 81 549 0 334 311 15 53 chr13 47014141 47014273 -72730625 - L2 LINE L2 -8 3264 3138 721 123 0 0 chr13 47014319 47014425 -72730473 + AluJb SINE Alu 199 304 -8 12686 26 9 0 chr13 47014679 47016944 -72727954 + L1PA7 LINE L1 3879 6152 -2 5084 197 19 41 chr13 47016953 47017432 -72727466 + L1MB2 LINE L1 4015 4503 -1668 2400 88 3 0 chr13 47017432 47017739 -72727159 + AluY SINE Alu 1 308 -3 5084 197 19 41 chr13 47017739 47018829 -72726069 + L1MB2 LINE L1 4503 5563 -608 2209 103 13 3 chr13 47018831 47019133 -72725765 + AluSx SINE Alu 1 305 -7 1084 135 0 0 chr13 47019133 47019289 -72725609 + AluSg/x SINE Alu 132 287 -23 2222 184 63 10 chr13 47019301 47019790 -72725108 + L1MB2 LINE L1 5550 6064 -107 260 111 22 0 chr13 47019895 47019940 -72724958 + CT-rich Low_complexity Low_complexity 2 47 0 514 237 168 63 chr13 47020015 47020367 -72724531 + MER77 LTR ERV1 299 670 -36 23 33 0 0 chr13 47020410 47020440 -72724458 + AT_rich Low_complexity Low_complexity 1 30 0 2596 61 0 0 chr13 47020775 47021086 -72723812 - AluY SINE Alu 0 311 1 2299 78 7 29 chr13 47021492 47021799 -72723099 - AluY SINE Alu -11 300 1 1133 114 23 11 chr13 47021925 47022100 -72722798 + AluSg/x SINE Alu 135 311 -1 6918 81 8 26 chr13 47022523 47023327 -72721571 - L1PA11 LINE L1 0 6174 5376 2249 116 0 0 chr13 47023327 47023628 -72721270 - AluSx SINE Alu -11 301 1 6918 81 8 26 chr13 47023628 47024113 -72720785 - L1PA11 LINE L1 -798 5376 4883 2547 42 0 3 chr13 47026506 47026795 -72718103 - AluY SINE Alu -11 300 13 283 81 0 0 chr13 47026795 47026832 -72718066 - AluY SINE Alu -266 37 1 1977 144 7 0 chr13 47027362 47027646 -72717252 + AluSx SINE Alu 1 286 -26 718 104 87 0 chr13 47027649 47027764 -72717134 + L1MA4A LINE L1 6178 6302 -1 1049 285 166 9 chr13 47028275 47028970 -72715928 + L2 LINE L2 2476 3280 -33 198 0 0 0 chr13 47029685 47029707 -72715191 + (A)n Simple_repeat Simple_repeat 1 22 0 324 226 196 10 chr13 47029807 47029909 -72714989 - L2 LINE L2 0 3313 3193 * 642 317 149 32 chr13 47029906 47030246 -72714652 - L3 LINE CR1 -779 798 499 1940 137 0 7 chr13 47030246 47030545 -72714353 + AluJb SINE Alu 3 299 -13 642 317 149 32 chr13 47030545 47030741 -72714157 - L3 LINE CR1 -1078 499 199 2214 62 6 84 chr13 47031047 47031369 -72713529 + AluSp SINE Alu 1 297 -16 2629 53 0 0 chr13 47031584 47031886 -72713012 + AluSg SINE Alu 1 302 -8 775 171 26 0 chr13 47032375 47032492 -72712406 + FLAM_A SINE Alu 5 124 -9 419 202 57 65 chr13 47033244 47033338 -72711560 - L2 LINE L2 0 3313 3219 2269 103 10 6 chr13 47033338 47033650 -72711248 + AluSq SINE Alu 1 313 0 419 202 57 65 chr13 47033650 47033679 -72711219 - L2 LINE L2 -94 3219 3191 207 0 0 0 chr13 47033955 47033978 -72710920 + (TAA)n Simple_repeat Simple_repeat 3 25 0 378 230 97 97 chr13 47034784 47034980 -72709918 + LTR16A LTR ERVL 1 196 -254 392 253 71 55 chr13 47035109 47035291 -72709607 + MER5A DNA MER1_type 4 188 -1 1010 169 0 33 chr13 47035426 47035609 -72709289 + FRAM SINE Alu 1 176 0 2035 230 32 32 chr13 47035642 47036199 -72708699 + L1ME3 LINE L1 5598 6154 -8 392 279 88 14 chr13 47036496 47036643 -72708255 + L1MC4 LINE L1 7690 7847 -195 2544 53 0 0 chr13 47036722 47037022 -72707876 + AluY SINE Alu 1 300 -11 311 291 136 0 chr13 47037036 47037139 -72707759 + MIR3 SINE MIR 69 185 -23 438 335 60 9 chr13 47037621 47037854 -72707044 + MIR SINE MIR 18 262 0 268 140 60 0 chr13 47038849 47038899 -72705999 + MIR SINE MIR 90 142 -120 272 304 25 0 chr13 47038902 47038981 -72705917 - L2 LINE L2 -5 3308 3228 2210 114 139 25 chr13 47039082 47039486 -72705412 - LTR7 LTR ERV1 0 450 1 204 40 0 0 chr13 47039538 47039563 -72705335 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1670 166 0 18 chr13 47039563 47039846 -72705052 - AluJo SINE Alu -34 278 1 370 229 82 35 chr13 47039847 47040017 -72704881 + L1M4 LINE L1 3196 3373 -2773 367 359 20 31 chr13 47040156 47040351 -72704547 - LTR16B LTR ERVL -238 226 34 1596 138 117 50 chr13 47040363 47040646 -72704252 - AluJb SINE Alu 0 302 1 4704 144 25 50 chr13 47040646 47041360 -72703538 - L1MB3 LINE L1 -32 6151 5421 2083 139 13 0 chr13 47041360 47041662 -72703236 - AluSx SINE Alu -6 306 1 4704 144 25 50 chr13 47041662 47041725 -72703173 - L1MB3 LINE L1 -762 5421 5358 2187 131 0 0 chr13 47041725 47042030 -72702868 - AluSx SINE Alu -7 305 1 4704 144 25 50 chr13 47042030 47042172 -72702726 - L1MB3 LINE L1 -825 5358 5254 442 217 48 0 chr13 47042286 47042369 -72702529 + MER45A DNA AcHobo 90 176 -2 279 0 0 0 chr13 47042575 47042606 -72702292 + (TA)n Simple_repeat Simple_repeat 1 31 0 520 272 42 68 chr13 47043032 47043223 -72701675 - MLT1H1 LTR MaLR -289 266 105 1540 114 14 0 chr13 47043285 47043505 -72701393 - L1PA7 LINE L1 -3408 2738 2516 20172 75 3 2 chr13 47043505 47043591 -72701307 + L1PA7 LINE L1 2752 2836 -3318 2270 83 7 10 chr13 47043591 47043893 -72701005 + AluSp SINE Alu 1 301 -12 20172 75 3 2 chr13 47043893 47047200 -72697698 + L1PA7 LINE L1 2836 6151 -3 2242 180 26 83 chr13 47047605 47048150 -72696748 + MLT2B3 LTR ERVL 1 514 -40 472 192 19 58 chr13 47048216 47048320 -72696578 - MLT1H1 LTR MaLR -455 100 1 2185 121 7 0 chr13 47048415 47048721 -72696177 - AluSx SINE Alu -2 310 3 638 143 31 0 chr13 47049064 47049162 -72695736 + AluJb SINE Alu 206 306 -6 2333 67 3 3 chr13 47049572 47049911 -72694987 + AluY SINE Alu 1 339 0 445 131 0 0 chr13 47050729 47050790 -72694108 - Tigger5 DNA MER2_type 0 2323 2263 312 161 16 16 chr13 47050792 47050854 -72694044 + Tigger5 DNA MER2_type 2248 2309 -14 359 192 39 13 chr13 47050858 47050936 -72693962 - Tigger5 DNA MER2_type -2243 80 1 250 280 48 36 chr13 47051609 47051635 -72693263 - L1MA10 LINE L1 -1 6333 6308 3973 212 25 17 chr13 47051635 47052412 -72692486 - L1ME1 LINE L1 -17 6149 5359 2256 150 33 25 chr13 47052412 47052773 -72692125 + THE1B LTR MaLR 1 364 0 3973 212 25 17 chr13 47052773 47052949 -72691949 - L1ME1 LINE L1 -807 5359 5186 877 223 0 21 chr13 47052953 47053146 -72691752 - MLT1A2 LTR MaLR 0 374 186 1785 181 36 80 chr13 47053151 47053565 -72691333 - MSTD LTR MaLR 0 396 1 2544 117 42 70 chr13 47053568 47054022 -72690876 - LTR59 LTR ERV1 -2 595 155 488 169 24 0 chr13 47054026 47054109 -72690789 - AluY SINE Alu -8 303 219 4259 65 73 39 chr13 47054109 47054697 -72690201 - LTR14B LTR ERVK 0 608 1 1791 86 0 0 chr13 47054702 47054924 -72689974 - AluSq SINE Alu -91 222 1 968 171 0 57 chr13 47054924 47055100 -72689798 - LTR59 LTR ERV1 -431 166 1 * 1013 186 46 5 chr13 47055100 47055279 -72689619 - MLT1A2 LTR MaLR -187 187 1 2560 226 38 27 chr13 47055279 47055992 -72688906 - L1ME1 LINE L1 -963 5183 4463 5895 94 23 3 chr13 47056007 47056466 -72688432 + L1PB2 LINE L1 5223 5709 -442 2302 55 48 3 chr13 47056466 47056756 -72688142 + AluY SINE Alu 1 303 -8 5895 94 23 3 chr13 47056756 47057173 -72687725 + L1PB2 LINE L1 5709 6116 -35 3651 98 12 39 chr13 47057189 47057808 -72687090 - MER4B LTR ERV1 -7 772 3 1192 221 88 16 chr13 47057808 47058183 -72686715 - L1ME1 LINE L1 -1677 4469 4068 1978 161 72 11 chr13 47058239 47058588 -72686310 - MLT1B LTR MaLR -20 370 1 970 175 57 64 chr13 47058590 47058870 -72686028 - L1ME1 LINE L1 -2104 4042 3765 377 165 12 59 chr13 47058976 47059061 -72685837 + HAL1 LINE L1 2320 2400 -107 702 211 0 0 chr13 47059118 47059251 -72685647 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr13 47059275 47059298 -72685600 + AT_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr13 47060521 47060550 -72684348 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 1697 96 4 0 chr13 47060550 47060780 -72684118 - AluSx SINE Alu -29 283 53 187 300 0 78 chr13 47060794 47060884 -72684014 - MIR SINE MIR -4 258 176 2890 3 0 0 chr13 47061878 47062184 -72682714 - AluYa5 SINE Alu -5 306 1 210 274 143 36 chr13 47062427 47062511 -72682387 - MIR SINE MIR -162 100 8 21 57 0 0 chr13 47062656 47062691 -72682207 + AT_rich Low_complexity Low_complexity 1 35 0 1543 170 28 28 chr13 47062694 47062982 -72681916 - AluJb SINE Alu -24 288 1 270 239 0 0 chr13 47063064 47063135 -72681763 + (TA)n Simple_repeat Simple_repeat 2 72 0 1973 158 69 17 chr13 47063461 47063808 -72681090 + MLT1A1 LTR MaLR 1 365 0 365 191 206 8 chr13 47063865 47063991 -72680907 + MIR SINE MIR 35 185 -77 1151 214 58 108 chr13 47064176 47064727 -72680171 - LTR8 LTR ERV1 -13 714 26 1138 199 40 16 chr13 47064734 47064985 -72679913 - LTR8 LTR ERV1 -434 257 1 191 297 0 31 chr13 47065030 47065094 -72679804 - MIR SINE MIR -26 236 175 694 257 117 23 chr13 47065235 47065492 -72679406 - L2 LINE L2 -5 3308 3028 1218 160 10 15 chr13 47065506 47065712 -72679186 + AluJo SINE Alu 90 294 -18 278 321 12 0 chr13 47066028 47066109 -72678789 + L2 LINE L2 2261 2342 -972 202 356 76 15 chr13 47066123 47066255 -72678643 + L2 LINE L2 3173 3312 -1 193 122 0 41 chr13 47067005 47067054 -72677844 + (TCTCCC)n Simple_repeat Simple_repeat 3 49 0 21 57 0 0 chr13 47067803 47067838 -72677060 + AT_rich Low_complexity Low_complexity 1 35 0 1211 162 32 112 chr13 47068740 47068841 -72676057 + Charlie1b DNA MER1_type 5 112 -2649 2218 123 0 0 chr13 47068841 47069141 -72675757 - AluSx SINE Alu -12 300 1 1211 162 32 112 chr13 47069141 47069574 -72675324 + Charlie1b DNA MER1_type 112 496 -27 2039 123 10 17 chr13 47069813 47070113 -72674785 - AluSx SINE Alu -14 298 1 1188 170 0 0 chr13 47070500 47070682 -72674216 + AluJo SINE Alu 1 182 -130 1984 108 35 3 chr13 47071493 47071780 -72673118 - AluSp SINE Alu -17 296 1 2117 127 0 0 chr13 47072036 47072335 -72672563 + AluSx SINE Alu 1 299 -13 180 278 19 56 chr13 47072335 47072443 -72672455 + L2 LINE L2 3043 3146 -167 452 118 147 0 chr13 47072626 47072694 -72672204 - AluJ/FLAM SINE Alu -233 79 2 2487 87 0 0 chr13 47073199 47073511 -72671387 + AluSx SINE Alu 1 312 0 27 0 0 0 chr13 47073557 47073584 -72671314 + AT_rich Low_complexity Low_complexity 1 27 0 202 229 0 0 chr13 47073845 47073893 -72671005 + T-rich Low_complexity Low_complexity 1 48 0 2048 146 0 0 chr13 47075791 47076092 -72668806 + AluSx SINE Alu 1 301 -11 1632 136 7 66 chr13 47076113 47076400 -72668498 + AluJo SINE Alu 24 293 -19 328 78 0 39 chr13 47076990 47077041 -72667857 - L1MB2 LINE L1 -2 6169 6121 203 378 36 40 chr13 47077179 47077401 -72667497 + L2 LINE L2 2826 3046 -226 302 333 83 0 chr13 47077890 47078010 -72666888 + L2 LINE L2 3179 3308 -5 2021 141 0 7 chr13 47079383 47079680 -72665218 + AluJb SINE Alu 2 296 -16 255 211 18 18 chr13 47079693 47079750 -72665148 + L2 LINE L2 3243 3299 -14 1029 207 225 20 chr13 47079824 47080285 -72664613 - L1ME3A LINE L1 0 6170 5601 560 265 20 33 chr13 47080307 47080458 -72664440 + MER46C DNA MER2_type 189 337 -1 302 281 50 33 chr13 47080752 47080873 -72664025 - MER5A DNA MER1_type -65 124 2 2474 93 0 0 chr13 47080889 47081201 -72663697 + AluSq SINE Alu 1 312 -1 2845 85 125 5 chr13 47081372 47081772 -72663126 + LTR7 LTR ERV1 1 448 -2 3130 78 64 0 chr13 47082349 47082770 -72662128 + LTR7 LTR ERV1 1 448 -2 19416 101 14 30 chr13 47082772 47085816 -72659082 + HERVH LTR ERV1 1 2995 -4718 5675 104 28 2 chr13 47085795 47086628 -72658270 + HERVH LTR ERV1 3140 3993 -3720 * 4623 131 0 1 chr13 47086630 47087293 -72657605 + HERVH LTR ERV1 4488 5149 -2564 1431 120 19 0 chr13 47087294 47087510 -72657388 + HERVH LTR ERV1 5600 5819 -1894 2438 96 48 13 chr13 47087510 47087887 -72657011 + HERVH LTR ERV1 7324 7713 0 2908 86 103 0 chr13 47087887 47088293 -72656605 + LTR7 LTR ERV1 1 448 -2 472 221 47 116 chr13 47088300 47088490 -72656408 + L2 LINE L2 3131 3307 -6 281 127 0 73 chr13 47088536 47088591 -72656307 - MER117 DNA MER1_type -80 117 67 1687 176 14 3 chr13 47088946 47089236 -72655662 + AluJb SINE Alu 1 293 -19 1397 141 0 65 chr13 47089292 47089555 -72655343 + MLT1B LTR MaLR 1 246 -144 255 33 0 0 chr13 47089567 47089597 -72655301 + MLT1B LTR MaLR 361 390 0 285 195 81 11 chr13 47089815 47089902 -72654996 - L1MC5 LINE L1 -36 7925 7833 2197 117 3 0 chr13 47089980 47090278 -72654620 - AluSx SINE Alu -13 299 1 3449 154 34 52 chr13 47090546 47091119 -72653779 - L1MB7 LINE L1 -16 6168 5609 1877 156 0 17 chr13 47091119 47091407 -72653491 - AluSx SINE Alu -25 287 5 3449 154 34 52 chr13 47091407 47091519 -72653379 - L1MB7 LINE L1 -575 5609 5496 2225 182 15 16 chr13 47091521 47092122 -72652776 - L1MB3 LINE L1 -201 6480 4703 2427 242 10 4 chr13 47092122 47092639 -72652259 - L1MB3 LINE L1 -5634 908 389 2397 140 35 14 chr13 47092642 47093067 -72651831 + MER61C LTR ERV1 13 430 -4 951 151 54 96 chr13 47093071 47093310 -72651588 + MER61C-int LTR ERV1 2 230 -4987 * 3058 111 18 47 chr13 47093289 47093802 -72651096 + MER61C-int LTR ERV1 343 840 -4377 28736 91 31 31 chr13 47093802 47097468 -72647430 + MER61C-int LTR ERV1 958 4623 -594 2003 141 10 0 chr13 47097468 47097759 -72647139 - AluSx SINE Alu -18 294 1 28736 91 31 31 chr13 47097759 47098354 -72646544 + MER61C-int LTR ERV1 4623 5217 0 2061 151 78 20 chr13 47098372 47098770 -72646128 + MER61C LTR ERV1 14 434 0 1148 242 61 37 chr13 47098771 47099147 -72645751 - L1MB3 LINE L1 -6153 389 5 1489 193 61 4 chr13 47099532 47099812 -72645086 - AluJb SINE Alu -16 296 1 240 179 0 119 chr13 47099815 47099882 -72645016 - L2 LINE L2 0 3272 3214 631 224 48 0 chr13 47100374 47100499 -72644399 + FLAM_C SINE Alu 2 132 -1 2397 74 0 3 chr13 47100769 47101065 -72643833 + AluY SINE Alu 1 295 -16 1575 211 103 44 chr13 47101153 47101628 -72643270 + MLT1D LTR MaLR 3 505 0 415 220 92 52 chr13 47102191 47102364 -72642534 + HAL1 LINE L1 2272 2451 -56 25 31 0 0 chr13 47102400 47102432 -72642466 + AT_rich Low_complexity Low_complexity 1 32 0 1751 164 20 13 chr13 47103398 47103703 -72641195 - AluJo SINE Alu 0 312 6 388 226 38 9 chr13 47104266 47104372 -72640526 + LTR41 LTR ERVL 70 178 -595 245 305 0 0 chr13 47104815 47104897 -72640001 + L1ME4a LINE L1 5802 5883 -238 23 33 0 0 chr13 47105048 47105078 -72639820 + AT_rich Low_complexity Low_complexity 1 30 0 1645 146 71 11 chr13 47105459 47105739 -72639159 + AluSx SINE Alu 4 300 -12 2462 93 0 0 chr13 47106112 47106424 -72638474 + AluSx SINE Alu 1 312 0 202 229 0 0 chr13 47106737 47106785 -72638113 + T-rich Low_complexity Low_complexity 1 48 0 2649 34 0 0 chr13 47108543 47108839 -72636059 + AluY SINE Alu 1 296 -15 410 296 146 39 chr13 47109947 47109977 -72634921 + MIR SINE MIR 5 30 -232 2033 133 10 26 chr13 47109977 47110285 -72634613 + AluSx SINE Alu 1 303 -9 410 296 146 39 chr13 47110285 47110487 -72634411 + MIR SINE MIR 30 262 0 345 309 29 7 chr13 47110672 47110808 -72634090 + L1ME4a LINE L1 5971 6109 -12 231 183 33 0 chr13 47110815 47110875 -72634023 + (TA)n Simple_repeat Simple_repeat 1 62 0 2024 128 3 10 chr13 47110875 47111163 -72633735 - AluSx SINE Alu -26 286 1 1932 125 12 65 chr13 47111165 47111486 -72633412 - AluSg SINE Alu -6 304 1 21 0 0 0 chr13 47111488 47111509 -72633389 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr13 47111842 47111912 -72632986 + AT_rich Low_complexity Low_complexity 1 70 0 2116 123 14 0 chr13 47112764 47113056 -72631842 + AluSx SINE Alu 1 296 -16 2198 84 7 0 chr13 47113080 47113364 -72631534 + AluSp SINE Alu 1 286 -27 2363 98 0 0 chr13 47113566 47113862 -72631036 + AluSg SINE Alu 1 296 -14 258 111 89 0 chr13 47113881 47113926 -72630972 - MER113 DNA MER1_type? -438 83 35 461 296 106 25 chr13 47113947 47114146 -72630752 + MIR SINE MIR 46 260 -2 223 154 51 0 chr13 47114681 47114720 -72630178 + MIR SINE MIR 38 78 -130 222 300 20 0 chr13 47114758 47114808 -72630090 + L3 LINE CR1 1518 1568 -9 238 267 0 0 chr13 47115010 47115055 -72629843 + L2 LINE L2 3223 3267 -5 1380 182 6 64 chr13 47115445 47115758 -72629140 + AluJb SINE Alu 1 295 -17 917 226 20 10 chr13 47116855 47117059 -72627839 + MER58A DNA MER1_type 19 224 0 866 242 104 76 chr13 47117619 47118093 -72626805 - L2 LINE L2 0 3313 2772 2357 74 3 16 chr13 47118093 47118404 -72626494 - AluSp SINE Alu -6 307 1 866 242 104 76 chr13 47118404 47118687 -72626211 - L2 LINE L2 -541 2772 2498 491 81 0 0 chr13 47119612 47119674 -72625224 - Alu SINE Alu -247 63 2 195 264 0 38 chr13 47119889 47119942 -72624956 - L2 LINE L2 -218 3054 3004 183 182 0 0 chr13 47120408 47120441 -72624457 + L2 LINE L2 2929 2961 -352 2399 70 3 13 chr13 47121928 47122242 -72622656 - AluY SINE Alu 0 311 1 2392 148 50 0 chr13 47122242 47122646 -72622252 - L1MB3 LINE L1 -41 6142 5719 32 0 0 0 chr13 47123663 47123695 -72621203 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr13 47123737 47123759 -72621139 + AT_rich Low_complexity Low_complexity 1 22 0 1082 196 34 0 chr13 47124107 47124311 -72620587 - MIR SINE MIR -39 223 13 630 167 0 0 chr13 47124386 47124506 -72620392 - HSMAR2 DNA Mariner -1 1301 1182 521 238 89 92 chr13 47124703 47125017 -72619881 - HAL1 LINE L1 0 2507 2193 1798 137 83 11 chr13 47125017 47125295 -72619603 + AluSp SINE Alu 1 298 -15 521 238 89 92 chr13 47125295 47125371 -72619527 - HAL1 LINE L1 -314 2193 2118 389 151 187 43 chr13 47125411 47125550 -72619348 - MER112 DNA MER1_type -96 164 6 * 1792 201 3 12 chr13 47125537 47125865 -72619033 + MLT1B LTR MaLR 64 388 -2 1158 280 23 33 chr13 47125902 47126295 -72618603 + L2 LINE L2 1043 1431 -1883 2278 115 0 0 chr13 47126950 47127262 -72617636 - AluSx SINE Alu 0 312 1 285 228 101 13 chr13 47127445 47127524 -72617374 - L2 LINE L2 -1 3271 3186 1568 199 85 47 chr13 47127700 47128148 -72616750 + MLT1C LTR MaLR 3 467 0 309 330 0 9 chr13 47128481 47128587 -72616311 - L3 LINE CR1 -207 1370 1266 2617 68 0 0 chr13 47128786 47129097 -72615801 - AluSx SINE Alu -1 311 1 314 239 137 17 chr13 47129147 47129264 -72615634 - L1ME4a LINE L1 -23 6098 5968 503 327 75 10 chr13 47129265 47129464 -72615434 - L3 LINE CR1 -354 1223 1012 514 268 124 0 chr13 47129713 47129866 -72615032 - MIR SINE MIR -90 172 1 2708 166 36 24 chr13 47129987 47130691 -72614207 + L1MC3 LINE L1 5728 6657 -1128 1783 189 9 96 chr13 47130727 47130866 -72614032 - MSTB LTR MaLR -15 411 262 548 202 182 0 chr13 47130866 47130965 -72613933 - FLAM_C SINE Alu -16 117 1 1783 189 9 96 chr13 47130965 47131275 -72613623 - MSTB LTR MaLR -164 262 1 2117 103 7 0 chr13 47131277 47131589 -72613309 + AluSx SINE Alu 1 314 0 428 178 75 9 chr13 47131596 47131703 -72613195 + L1MC3 LINE L1 7180 7293 -492 1556 176 61 71 chr13 47131705 47131871 -72613027 + MLT1B LTR MaLR 1 167 -223 8423 13 0 0 chr13 47131871 47132851 -72612047 - L1PA2 LINE L1 0 6155 5176 1556 176 61 71 chr13 47132851 47133077 -72611821 + MLT1B LTR MaLR 167 389 -1 1425 383 78 0 chr13 47133079 47133381 -72611517 + L1MC3 LINE L1 7295 7639 -146 1965 118 22 7 chr13 47133381 47133652 -72611246 - AluSx SINE Alu -37 275 1 1425 383 78 0 chr13 47133652 47133762 -72611136 + L1MC3 LINE L1 7639 7739 -46 1120 101 34 45 chr13 47133763 47133942 -72610956 - AluJb SINE Alu -52 260 84 358 278 0 26 chr13 47134019 47134134 -72610764 - HAL1 LINE L1 -349 2158 2047 278 353 45 8 chr13 47134568 47134701 -72610197 - L3 LINE CR1 -1011 566 429 186 43 0 0 chr13 47136547 47136570 -72608328 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 646 257 147 64 chr13 47136573 47136824 -72608074 - L2 LINE L2 -17 3296 3007 2282 102 0 7 chr13 47136824 47137127 -72607771 + AluSx SINE Alu 1 301 -11 646 257 147 64 chr13 47137127 47137221 -72607677 - L2 LINE L2 -306 3007 2922 424 250 0 0 chr13 47137242 47137334 -72607564 - MER93a LTR ERV1 -304 98 7 184 242 0 97 chr13 47137404 47137466 -72607432 - L2 LINE L2 -232 3040 2985 571 135 101 0 chr13 47137497 47137586 -72607312 - Tigger7 DNA MER2_type 0 2487 2390 * 1406 217 15 0 chr13 47137585 47137848 -72607050 - Tigger7 DNA MER2_type -2220 267 1 884 152 0 0 chr13 47137933 47138058 -72606840 + FLAM_C SINE Alu 1 125 -18 279 0 0 0 chr13 47138062 47138093 -72606805 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1209 164 13 44 chr13 47138737 47138962 -72605936 + AluJo SINE Alu 65 282 -30 882 57 0 0 chr13 47138962 47139068 -72605830 - AluSp/q SINE Alu -8 305 200 239 266 16 16 chr13 47139970 47140034 -72604864 + MIR SINE MIR 90 153 -109 234 103 0 176 chr13 47140037 47140105 -72604793 - L2 LINE L2 -1 3312 3257 207 296 0 28 chr13 47140103 47140174 -72604724 + MIR SINE MIR 156 224 -38 * 2409 89 0 3 chr13 47140387 47140691 -72604207 - AluSq SINE Alu -10 303 1 334 301 80 9 chr13 47141401 47141514 -72603384 + L2 LINE L2 3137 3257 -15 564 129 0 0 chr13 47141544 47141645 -72603253 + (TGGA)n Simple_repeat Simple_repeat 2 102 0 771 270 25 0 chr13 47142817 47143021 -72601877 + MIR SINE MIR 3 211 -51 1801 130 0 4 chr13 47143244 47143514 -72601384 - AluSg SINE Alu 0 310 42 2677 26 0 7 chr13 47143614 47143918 -72600980 + L1PA4 LINE L1 5851 6152 -3 358 308 51 62 chr13 47143999 47144194 -72600704 - LTR16B LTR ERVL -238 226 34 1837 92 117 50 chr13 47144206 47144489 -72600409 - AluJo SINE Alu 0 302 1 27 0 0 0 chr13 47144875 47144902 -72599996 + AT_rich Low_complexity Low_complexity 1 27 0 964 222 64 13 chr13 47146237 47146471 -72598427 - MIR SINE MIR -3 259 14 1906 106 16 4 chr13 47147337 47147592 -72597306 + AluSg SINE Alu 1 258 -52 252 0 0 0 chr13 47147933 47147961 -72596937 + (CCTAT)n Simple_repeat Simple_repeat 4 31 0 1992 128 0 4 chr13 47149617 47149898 -72595000 + AluSx SINE Alu 1 280 -32 2285 110 0 3 chr13 47150036 47150345 -72594553 + AluSg SINE Alu 1 308 -2 502 180 30 20 chr13 47150509 47150609 -72594289 - FLAM_C SINE Alu -3 140 40 310 154 200 0 chr13 47150609 47150674 -72594224 - MER81 DNA DNA -36 78 1 2329 84 7 0 chr13 47151266 47151565 -72593333 - AluSq SINE Alu -12 301 1 33 25 0 0 chr13 47153027 47153067 -72591831 + AT_rich Low_complexity Low_complexity 1 40 0 527 257 23 39 chr13 47153067 47153310 -72591588 - L1ME1 LINE L1 -238 5928 5690 232 347 41 31 chr13 47153345 47153443 -72591455 - L2 LINE L2 -33 3239 3141 2338 92 10 0 chr13 47153469 47153773 -72591125 + AluSx SINE Alu 6 312 0 369 0 0 0 chr13 47153787 47153828 -72591070 + (TA)n Simple_repeat Simple_repeat 2 42 0 788 143 63 8 chr13 47154129 47154255 -72590643 - FLAM_A SINE Alu 0 133 1 2139 118 0 3 chr13 47155026 47155322 -72589576 + AluSx SINE Alu 1 295 -17 638 260 77 20 chr13 47155443 47155639 -72589259 - MIR SINE MIR 0 262 56 336 292 0 11 chr13 47155895 47155984 -72588914 + MIR3 SINE MIR 113 200 -8 965 209 100 7 chr13 47156208 47156476 -72588422 - L1MA6 LINE L1 -9 6291 6001 875 316 30 12 chr13 47157351 47157690 -72587208 + L1MC4a LINE L1 5263 5607 -2201 5038 234 18 12 chr13 47157695 47158855 -72586043 + MER69B DNA AcHobo 1 1167 -59 236 185 77 15 chr13 47159474 47159539 -72585359 + MER69B DNA AcHobo 1150 1218 -8 931 246 98 27 chr13 47159583 47159920 -72584978 + L1MC4a LINE L1 5638 5998 -1810 1745 122 103 4 chr13 47160060 47160331 -72584567 - AluSx SINE Alu -14 298 1 263 143 20 0 chr13 47160888 47160937 -72583961 + L1MA8 LINE L1 5319 5368 -778 845 172 14 0 chr13 47160944 47161089 -72583809 + FRAM SINE Alu 20 166 -10 5163 137 35 12 chr13 47161089 47161509 -72583389 + L1MA8 LINE L1 5359 5768 -523 243 0 0 0 chr13 47161509 47161536 -72583362 + (CA)n Simple_repeat Simple_repeat 2 28 0 5163 137 35 12 chr13 47161536 47162004 -72582894 + L1MA8 LINE L1 5768 6267 -24 2277 109 0 7 chr13 47162082 47162386 -72582512 + AluSg SINE Alu 1 302 -8 204 304 217 11 chr13 47162840 47162932 -72581966 + L2 LINE L2 3162 3272 0 2864 138 12 33 chr13 47163079 47163252 -72581646 - L1MB5 LINE L1 -1 6173 5998 2673 133 30 30 chr13 47163252 47163638 -72581260 + MSTA LTR MaLR 1 390 -38 1795 155 3 11 chr13 47163638 47163944 -72580954 - AluJb SINE Alu 0 304 1 2673 133 30 30 chr13 47163944 47163984 -72580914 + MSTA LTR MaLR 389 428 0 2864 138 12 33 chr13 47163984 47164295 -72580603 - L1MB5 LINE L1 -176 5998 5699 355 286 85 20 chr13 47165015 47165214 -72579684 + L1ME LINE L1 5564 5775 -346 1925 127 4 0 chr13 47165487 47165762 -72579136 + AluSp SINE Alu 5 280 -33 372 43 0 0 chr13 47165762 47165808 -72579090 + (CA)n Simple_repeat Simple_repeat 1 46 0 770 245 81 66 chr13 47166256 47166597 -72578301 - L2 LINE L2 -1 3312 2957 2210 86 48 0 chr13 47166597 47166889 -72578009 + AluSp SINE Alu 3 308 -5 770 245 81 66 chr13 47166889 47167068 -72577830 - L2 LINE L2 -356 2957 2782 1573 126 0 9 chr13 47167842 47168065 -72576833 + AluSq SINE Alu 1 221 -92 1127 168 6 0 chr13 47168066 47168239 -72576659 + AluJo/FRAM SINE Alu 129 302 -10 1308 250 145 38 chr13 47168239 47168342 -72576556 - L2 LINE L2 -1091 2223 2132 2287 110 13 0 chr13 47168342 47168642 -72576256 + AluSx SINE Alu 1 304 -8 1308 250 145 38 chr13 47168642 47169138 -72575760 - L2 LINE L2 -1182 2132 1560 417 254 0 29 chr13 47169265 47169403 -72575495 + L1ME4a LINE L1 5988 6121 0 1912 113 3 56 chr13 47169843 47170189 -72574709 + AluSq SINE Alu 1 330 0 5978 147 22 45 chr13 47170537 47170590 -72574308 - L1MC2 LINE L1 -8 6336 6283 2127 106 0 82 chr13 47170590 47170930 -72573968 + AluSx SINE Alu 1 312 0 5978 147 22 45 chr13 47170930 47171933 -72572965 - L1MC2 LINE L1 -61 6283 5306 2013 97 0 88 chr13 47171933 47172252 -72572646 - AluSg SINE Alu -19 291 1 5978 147 22 45 chr13 47172252 47172371 -72572527 - L1MC2 LINE L1 -1038 5306 5186 199 240 156 101 chr13 47172567 47172632 -72572266 - MIR SINE MIR -25 237 177 2353 86 0 0 chr13 47172632 47172922 -72571976 + AluSg SINE Alu 2 291 -19 199 240 156 101 chr13 47172922 47173035 -72571863 - MIR SINE MIR -85 177 49 1053 187 0 12 chr13 47174247 47174413 -72570485 + FRAM SINE Alu 1 164 -2 2342 92 0 3 chr13 47174501 47174796 -72570102 + AluSg SINE Alu 1 294 -16 216 212 99 113 chr13 47174829 47174980 -72569918 + MER5A DNA MER1_type 1 149 -40 1620 202 57 95 chr13 47175366 47175686 -72569212 + MLT1D LTR MaLR 1 332 -173 2114 91 24 24 chr13 47175686 47175983 -72568915 + AluSg SINE Alu 1 297 -13 1620 202 57 95 chr13 47175983 47175995 -72568903 + MLT1D LTR MaLR 332 343 -162 2204 106 0 28 chr13 47175995 47176315 -72568583 + AluSx SINE Alu 1 311 -1 1620 202 57 95 chr13 47176315 47176505 -72568393 + MLT1D LTR MaLR 343 504 -1 320 302 12 0 chr13 47176708 47176794 -72568104 - MER5B DNA MER1_type -91 87 1 4701 235 107 103 chr13 47177674 47178875 -72566023 - HAL1 LINE L1 -12 2495 1097 1364 98 0 5 chr13 47178875 47179059 -72565839 - AluSg/x SINE Alu 0 310 128 4701 235 107 103 chr13 47179059 47180023 -72564875 - HAL1 LINE L1 -1410 1097 138 738 206 44 22 chr13 47180087 47180267 -72564631 + HAL1 LINE L1 1348 1531 -976 2197 99 3 45 chr13 47180411 47180724 -72564174 - AluSg SINE Alu -9 301 2 369 211 88 35 chr13 47181122 47181293 -72563605 - Charlie7 DNA MER1_type -1 2611 2432 303 163 0 75 chr13 47181263 47181343 -72563555 - Charlie7 DNA MER1_type -2501 111 38 * 235 274 44 25 chr13 47181350 47181455 -72563443 + MER5A DNA MER1_type 7 124 -65 1784 119 236 9 chr13 47181476 47181819 -72563079 + MER61C LTR ERV1 14 434 0 2376 82 3 0 chr13 47181917 47182211 -72562687 + AluSg SINE Alu 1 295 -15 27 0 0 0 chr13 47182390 47182417 -72562481 + AT_rich Low_complexity Low_complexity 1 27 0 530 193 128 9 chr13 47182417 47182526 -72562372 - FLAM_C SINE Alu -11 122 1 243 223 121 79 chr13 47182568 47182710 -72562188 - L1ME4a LINE L1 -23 6098 5943 2178 104 0 0 chr13 47182710 47182997 -72561901 + AluSq SINE Alu 1 287 -26 243 223 121 79 chr13 47182997 47183069 -72561829 - L1ME4a LINE L1 -178 5943 5875 200 273 18 45 chr13 47183204 47183314 -72561584 + CT-rich Low_complexity Low_complexity 3 109 0 1903 90 124 0 chr13 47183497 47183763 -72561135 - AluSp SINE Alu -14 299 1 2961 132 104 20 chr13 47185537 47186075 -72558823 + LTR59 LTR ERV1 9 591 -6 2161 95 28 0 chr13 47187764 47188047 -72556851 + AluSg SINE Alu 1 291 -19 1087 273 146 57 chr13 47188216 47189061 -72555837 + L1MC4a LINE L1 5255 6174 -1634 2073 129 3 3 chr13 47189061 47189379 -72555519 - AluSx SINE Alu 0 318 1 242 163 0 0 chr13 47189465 47189508 -72555390 + L1MB5 LINE L1 6131 6173 -1 424 282 166 11 chr13 47189602 47189783 -72555115 + MER63A DNA MER1_type 2 210 0 299 291 55 24 chr13 47190168 47190295 -72554603 + MLT1L LTR MaLR 150 280 -335 1733 157 44 29 chr13 47190565 47190909 -72553989 + MLT2C1 LTR ERVL 1 349 -48 227 175 18 18 chr13 47190942 47190999 -72553899 + MLT2C1 LTR ERVL 464 520 0 376 231 67 0 chr13 47191112 47191216 -72553682 - L1ME4a LINE L1 -476 5645 5535 230 121 0 0 chr13 47191249 47191282 -72553616 + L2 LINE L2 3264 3296 -17 306 305 30 23 chr13 47191470 47191601 -72553297 + MIR SINE MIR 21 152 -110 408 335 132 16 chr13 47192798 47193117 -72551781 + L1MEc LINE L1 29 384 -6012 409 89 36 0 chr13 47193335 47193391 -72551507 + FAM SINE Alu 105 162 -17 381 194 103 101 chr13 47193395 47193644 -72551254 + L1MEc LINE L1 2094 2300 -3915 2062 138 14 0 chr13 47193644 47193941 -72550957 + AluSx SINE Alu 1 301 -11 381 194 103 101 chr13 47193941 47194004 -72550894 + L1MEc LINE L1 2300 2361 -3854 1931 149 0 35 chr13 47194007 47194323 -72550575 + AluSx SINE Alu 1 305 -7 982 144 0 40 chr13 47194323 47194496 -72550402 + AluJo/FRAM SINE Alu 134 299 -13 2761 214 39 64 chr13 47194514 47195230 -72549668 + L1MEc LINE L1 2364 3053 -3162 2011 127 7 3 chr13 47195230 47195522 -72549376 + AluSq SINE Alu 1 293 -20 2761 214 39 64 chr13 47195522 47195733 -72549165 + L1MEc LINE L1 3053 3268 -2947 2108 146 0 3 chr13 47195743 47196045 -72548853 + AluSx SINE Alu 1 301 -11 2374 203 3 52 chr13 47196074 47196431 -72548467 - L1M4 LINE L1 -1941 4205 3832 2201 89 34 0 chr13 47196431 47196724 -72548174 - AluSq SINE Alu -10 303 1 2374 203 3 52 chr13 47196724 47196901 -72547997 - L1M4 LINE L1 -2314 3832 3699 892 152 0 36 chr13 47196901 47197039 -72547859 - FLAM_A SINE Alu 0 133 1 2374 203 3 52 chr13 47197039 47197084 -72547814 - L1M4 LINE L1 -2447 3699 3653 1611 142 0 15 chr13 47197857 47198118 -72546780 - AluSg SINE Alu -53 257 1 2273 142 9 0 chr13 47199415 47199747 -72545151 + MER2 DNA MER2_type 1 335 -10 210 71 0 0 chr13 47200119 47200147 -72544751 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 186 286 32 0 chr13 47200395 47200458 -72544440 - L3 LINE CR1 -882 695 631 183 80 0 0 chr13 47200584 47200609 -72544289 + (CA)n Simple_repeat Simple_repeat 1 25 0 2199 106 3 16 chr13 47201082 47201394 -72543504 + AluSx SINE Alu 1 308 -4 5197 135 84 42 chr13 47201873 47202845 -72542053 - L1MC1 LINE L1 -2 6331 5319 294 172 0 0 chr13 47202846 47202904 -72541994 + Charlie5 DNA MER1_type 50 107 -2505 183 80 0 0 chr13 47202906 47202931 -72541967 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 516 193 0 12 chr13 47202935 47203018 -72541880 - FRAM/FAM SINE Alu -97 79 1 1080 183 0 24 chr13 47203027 47203196 -72541702 - FAM SINE Alu -10 165 1 742 169 7 0 chr13 47203202 47203344 -72541554 - L1MC1 LINE L1 -819 5327 5185 192 77 0 0 chr13 47203390 47203416 -72541482 + (TC)n Simple_repeat Simple_repeat 2 27 0 2282 89 0 41 chr13 47203432 47203611 -72541287 - AluSp SINE Alu -10 303 141 2378 66 0 35 chr13 47203611 47203930 -72540968 - AluY SINE Alu -3 308 1 2282 89 0 41 chr13 47203930 47204066 -72540832 - AluSp SINE Alu -172 141 1 44 46 0 0 chr13 47204255 47204320 -72540578 + AT_rich Low_complexity Low_complexity 1 65 0 311 297 151 53 chr13 47206746 47207103 -72537795 + L1M2 LINE L1 628 1019 -5830 185 349 47 0 chr13 47209584 47209670 -72535228 - MIR3 SINE MIR -13 195 106 360 0 0 0 chr13 47209790 47209830 -72535068 + (A)n Simple_repeat Simple_repeat 1 40 0 1412 175 17 34 chr13 47209831 47210128 -72534770 + AluJo SINE Alu 1 292 -20 414 0 0 0 chr13 47210604 47210650 -72534248 + (CA)n Simple_repeat Simple_repeat 2 47 0 8337 121 24 21 chr13 47210650 47211935 -72532963 - HSMAR2 DNA Mariner -5 1297 9 2018 100 11 0 chr13 47211957 47212227 -72532671 + AluSq SINE Alu 11 283 -30 992 185 82 26 chr13 47213200 47213432 -72531466 + MIR SINE MIR 17 261 -1 186 189 27 0 chr13 47213924 47213961 -72530937 - MIR SINE MIR -76 186 149 311 298 54 32 chr13 47214114 47214283 -72530615 - L1MEd LINE L1 -5053 1066 918 2114 133 3 3 chr13 47214297 47214599 -72530299 - AluSx SINE Alu -10 302 1 2347 99 0 0 chr13 47214601 47214904 -72529994 - AluSx SINE Alu -9 303 1 245 243 81 58 chr13 47214967 47215140 -72529758 - HAL1 LINE L1 -1498 1009 833 982 200 12 86 chr13 47215248 47215503 -72529395 - MER106A DNA MER1_type 0 236 1 614 129 129 29 chr13 47215717 47215857 -72529041 - L1MC1 LINE L1 0 6333 6180 969 156 58 82 chr13 47216322 47216579 -72528319 - L1MB8 LINE L1 0 6178 5928 2107 144 23 121 chr13 47216583 47216808 -72528090 - L1MA6 LINE L1 -239 6061 5914 1579 159 87 14 chr13 47216808 47217127 -72527771 - AluJo SINE Alu 0 312 1 2107 144 23 121 chr13 47217127 47217422 -72527476 - L1MA6 LINE L1 -386 5914 5592 1510 256 139 19 chr13 47217967 47218479 -72526419 + MLT1G1 LTR MaLR 1 573 -22 2577 113 21 32 chr13 47218483 47218819 -72526079 + THE1C LTR MaLR 1 334 -41 2068 142 7 0 chr13 47218819 47219122 -72525776 - AluSx SINE Alu -7 305 1 2577 113 21 32 chr13 47219122 47219164 -72525734 + THE1C LTR MaLR 334 375 0 9052 96 44 132 chr13 47219164 47220896 -72524002 + THE1C-int LTR MaLR 1 1580 0 3069 94 0 0 chr13 47220898 47221271 -72523627 + THE1C LTR MaLR 3 375 0 2197 127 0 0 chr13 47221375 47221667 -72523231 - AluSg SINE Alu -18 292 1 592 276 133 5 chr13 47221764 47221960 -72522938 + MIR SINE MIR 29 249 -13 285 324 39 16 chr13 47222078 47222260 -72522638 - MLT1L LTR MaLR 0 615 430 1742 163 3 16 chr13 47222497 47222804 -72522094 + AluJb SINE Alu 1 303 -9 189 250 181 28 chr13 47223237 47223309 -72521589 + L2 LINE L2 3219 3301 -12 1040 216 80 50 chr13 47223397 47223587 -72521311 + MLT1D LTR MaLR 1 184 -321 285 29 0 0 chr13 47223587 47223621 -72521277 + (TC)n Simple_repeat Simple_repeat 1 34 0 237 33 0 0 chr13 47223620 47223650 -72521248 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 1040 216 80 50 chr13 47223621 47223820 -72521078 + MLT1D LTR MaLR 184 372 -133 605 142 0 25 chr13 47223899 47224019 -72520879 + MLT1D LTR MaLR 389 505 0 183 42 0 0 chr13 47224803 47224827 -72520071 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2077 117 17 13 chr13 47225767 47226067 -72518831 + AluSx SINE Alu 1 301 -11 209 94 19 75 chr13 47226916 47226969 -72517929 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 1902 135 15 4 chr13 47227307 47227581 -72517317 + AluSx SINE Alu 29 305 -7 929 241 95 59 chr13 47227666 47227799 -72517099 + LTR33 LTR ERVL 36 163 -358 2303 111 0 0 chr13 47227799 47228106 -72516792 - AluSg SINE Alu -2 308 2 929 241 95 59 chr13 47228106 47228433 -72516465 + LTR33 LTR ERVL 163 513 -8 257 257 14 14 chr13 47228578 47228648 -72516250 + MLT1L LTR MaLR 132 201 -414 210 143 29 0 chr13 47228996 47229031 -72515867 + (CA)n Simple_repeat Simple_repeat 2 37 0 452 328 90 0 chr13 47229044 47229367 -72515531 - L1MC4a LINE L1 -1883 5925 5574 33805 92 9 27 chr13 47229388 47235526 -72509372 + L1PA6 LINE L1 64 6088 -66 3551 135 70 38 chr13 47235526 47236404 -72508494 - MER11A LTR ERVK 0 1266 223 2591 58 0 6 chr13 47236404 47236716 -72508182 + AluY SINE Alu 1 310 -1 3551 135 70 38 chr13 47236716 47236800 -72508098 - MER11A LTR ERVK -1043 223 143 1368 88 5 5 chr13 47236976 47237168 -72507730 - AluY SINE Alu -119 192 1 2222 95 0 10 chr13 47237699 47237994 -72506904 - AluSc SINE Alu -16 293 2 704 306 128 30 chr13 47238073 47238475 -72506423 + L2 LINE L2 2245 2606 -708 2448 80 3 0 chr13 47238475 47238775 -72506123 - AluSp SINE Alu -12 301 1 1514 180 39 7 chr13 47238779 47239063 -72505835 - AluJb SINE Alu -19 293 1 704 306 128 30 chr13 47239063 47239256 -72505642 + L2 LINE L2 2608 2904 -410 192 154 0 26 chr13 47239475 47239514 -72505384 + MIR SINE MIR 218 255 -7 682 277 40 68 chr13 47239586 47239777 -72505121 + MIR SINE MIR 21 206 -56 2594 3 0 0 chr13 47239777 47240093 -72504805 + AluYa5 SINE Alu 1 316 0 682 277 40 68 chr13 47240093 47240149 -72504749 + MIR SINE MIR 206 262 0 2142 66 14 3 chr13 47240450 47240738 -72504160 - AluY SINE Alu -20 291 1 193 156 172 47 chr13 47241069 47241133 -72503765 - L2 LINE L2 -92 3221 3150 453 333 98 14 chr13 47241218 47241494 -72503404 - L2 LINE L2 -354 2960 2662 1960 146 3 7 chr13 47241494 47241782 -72503116 + AluJb SINE Alu 1 287 -25 28 0 0 0 chr13 47241783 47241811 -72503087 + AT_rich Low_complexity Low_complexity 1 28 0 188 357 12 24 chr13 47241811 47241895 -72503003 - L2 LINE L2 -640 2674 2592 688 278 75 82 chr13 47242443 47242907 -72501991 + L2 LINE L2 2144 2604 -710 183 368 45 45 chr13 47243336 47243559 -72501339 - L2 LINE L2 -485 2829 2607 21 36 0 0 chr13 47243905 47243933 -72500965 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr13 47244446 47244468 -72500430 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1908 137 7 3 chr13 47244470 47244754 -72500144 - AluSg SINE Alu -25 285 1 246 279 128 0 chr13 47245659 47245745 -72499153 + MER5A DNA MER1_type 6 102 -87 2443 62 3 31 chr13 47247455 47247775 -72497123 + AluY SINE Alu 1 311 0 1519 138 20 126 chr13 47247858 47248214 -72496684 + AluYb8 SINE Alu 1 318 0 2142 135 16 11 chr13 47248249 47248620 -72496278 + L1MB3 LINE L1 5804 6176 -7 1943 149 3 0 chr13 47248851 47249176 -72495722 - AluJb SINE Alu 0 326 1 271 301 264 0 chr13 47249199 47249392 -72495506 - MIR SINE MIR -5 257 14 327 258 32 11 chr13 47249476 47249569 -72495329 - L2 LINE L2 -1 3312 3218 2303 98 3 3 chr13 47251634 47251941 -72492957 - AluSp SINE Alu -6 307 1 2387 125 35 5 chr13 47251965 47252341 -72492557 + MLT1B LTR MaLR 1 387 -3 362 298 32 32 chr13 47252351 47252475 -72492423 + L2 LINE L2 3145 3268 -4 703 198 0 0 chr13 47252861 47252977 -72491921 + FLAM_C SINE Alu 1 116 -27 198 0 0 0 chr13 47252980 47253002 -72491896 + (CA)n Simple_repeat Simple_repeat 2 23 0 578 305 63 11 chr13 47253004 47253355 -72491543 - L1ME LINE L1 -357 5764 5396 494 159 34 35 chr13 47254038 47254163 -72490735 - L1ME3 LINE L1 -176 5986 5850 358 182 13 0 chr13 47254163 47254240 -72490658 - L1MB4 LINE L1 -1 6179 6102 2841 171 34 60 chr13 47254327 47254551 -72490347 - L1MB3 LINE L1 -107 6076 5848 1854 159 13 7 chr13 47254551 47254853 -72490045 - AluJb SINE Alu -8 304 1 2841 171 34 60 chr13 47254853 47255299 -72489599 - L1MB3 LINE L1 -335 5848 5423 2039 159 0 0 chr13 47255304 47255600 -72489298 - AluSx SINE Alu -16 296 1 292 372 67 9 chr13 47255633 47255856 -72489042 + L2 LINE L2 2036 2271 -1043 2266 82 31 0 chr13 47256092 47256384 -72488514 - AluSc SINE Alu -8 301 1 705 214 7 7 chr13 47256384 47256529 -72488369 - L1MC1 LINE L1 -8 6325 6181 1283 187 99 29 chr13 47256529 47256681 -72488217 - LTR54 LTR ERV1 -4 399 259 2234 129 0 0 chr13 47256681 47256990 -72487908 + AluSg1 SINE Alu 1 309 0 1283 187 99 29 chr13 47256990 47257287 -72487611 - LTR54 LTR ERV1 -144 259 1 2833 129 42 40 chr13 47257288 47257487 -72487411 - L1MC1 LINE L1 -146 6187 5990 2268 119 0 0 chr13 47257487 47257790 -72487108 - AluSg SINE Alu -7 303 1 1576 228 0 10 chr13 47257798 47258105 -72486793 - AluJo SINE Alu -8 304 1 2833 129 42 40 chr13 47258105 47258468 -72486430 - L1MC1 LINE L1 -349 5984 5615 1074 176 19 147 chr13 47258471 47258549 -72486349 + MLT1A1 LTR MaLR 3 89 -276 725 240 0 0 chr13 47258549 47258678 -72486220 - FLAM_A SINE Alu -3 130 2 1074 176 19 147 chr13 47258678 47259015 -72485883 + MLT1A1 LTR MaLR 89 365 0 617 160 88 0 chr13 47259015 47259140 -72485758 - L1MC1 LINE L1 -726 5618 5483 1633 135 15 8 chr13 47259185 47259444 -72485454 + AluSx SINE Alu 1 261 -51 421 62 15 0 chr13 47261272 47261337 -72483561 - MER41B LTR ERV1 -89 546 481 22 0 0 0 chr13 47261429 47261451 -72483447 + AT_rich Low_complexity Low_complexity 1 22 0 1945 152 17 0 chr13 47261851 47262141 -72482757 + AluSx SINE Alu 2 296 -16 247 245 0 0 chr13 47262168 47262217 -72482681 - Charlie8 DNA MER1_type -2244 173 125 433 272 24 8 chr13 47262305 47262430 -72482468 + MER58 DNA MER1_type 4 130 -2290 473 235 39 0 chr13 47262533 47262635 -72482263 + MIR SINE MIR 51 156 -106 1712 123 0 4 chr13 47262699 47262942 -72481956 - AluSg SINE Alu -10 300 59 580 245 87 15 chr13 47263268 47263464 -72481434 - L1ME2 LINE L1 -6 6158 5949 471 305 189 0 chr13 47263598 47263762 -72481136 - MER91A DNA MER1_type 0 196 2 2151 98 4 0 chr13 47263813 47264090 -72480808 - AluSx SINE Alu -34 278 1 510 155 0 10 chr13 47264127 47264224 -72480674 - Charlie1b DNA MER1_type 0 523 428 * 792 174 68 133 chr13 47264217 47264539 -72480359 - Charlie1b DNA MER1_type -217 306 6 528 221 81 97 chr13 47264544 47264978 -72479920 - HAL1 LINE L1 -170 2337 1911 626 193 167 10 chr13 47265143 47265335 -72479563 - HAL1 LINE L1 -837 1670 1449 345 209 47 70 chr13 47265389 47265518 -72479380 - HAL1 LINE L1 -2339 168 43 1830 147 50 7 chr13 47266125 47266404 -72478494 + AluJb SINE Alu 1 291 -21 36 23 0 0 chr13 47266404 47266447 -72478451 + AT_rich Low_complexity Low_complexity 1 43 0 289 296 61 0 chr13 47266591 47266689 -72478209 + MIR3 SINE MIR 77 180 -28 2337 88 7 0 chr13 47267621 47267915 -72476983 + AluSx SINE Alu 1 296 -16 2365 83 0 7 chr13 47268404 47268705 -72476193 - AluY SINE Alu -12 299 1 2260 101 3 0 chr13 47269456 47269754 -72475144 - AluSc SINE Alu -10 299 1 30 27 0 0 chr13 47269971 47270008 -72474890 + AT_rich Low_complexity Low_complexity 1 37 0 842 145 0 35 chr13 47270919 47271064 -72473834 - FLAM_C SINE Alu -3 140 1 460 247 51 66 chr13 47271108 47271239 -72473659 - L1ME2 LINE L1 -461 5701 5606 1398 103 75 0 chr13 47271239 47271453 -72473445 + MER30 DNA MER1_type 1 230 0 460 247 51 66 chr13 47271453 47271584 -72473314 - L1ME2 LINE L1 -556 5606 5474 1548 214 79 18 chr13 47271630 47272087 -72472811 - L1ME1 LINE L1 -7 6159 5675 537 278 104 33 chr13 47272090 47272511 -72472387 - L1ME1 LINE L1 -1819 4327 3877 238 318 47 47 chr13 47272699 47272806 -72472092 + L2 LINE L2 3150 3256 -16 2433 65 3 0 chr13 47272966 47273260 -72471638 + AluY SINE Alu 1 295 -16 253 289 70 23 chr13 47273269 47273397 -72471501 - L2 LINE L2 -1 3312 3179 270 376 133 26 chr13 47273924 47274150 -72470748 + L2 LINE L2 2998 3247 -25 1761 113 71 37 chr13 47274938 47275264 -72469634 + MER1B DNA MER1_type 3 339 0 2298 104 0 0 chr13 47277506 47277804 -72467094 - AluSq SINE Alu -15 298 1 337 83 0 33 chr13 47277840 47277900 -72466998 + (TG)n Simple_repeat Simple_repeat 1 58 0 1886 151 0 33 chr13 47277931 47278230 -72466668 - AluJb SINE Alu -23 289 1 329 248 88 93 chr13 47279497 47279591 -72465307 - L1MC4 LINE L1 -195 7847 7754 1781 136 51 30 chr13 47279591 47279923 -72464975 - MER44D DNA MER2_type 0 609 1 329 248 88 93 chr13 47279923 47280054 -72464844 - L1MC4 LINE L1 -288 7754 7623 603 161 93 43 chr13 47280291 47280453 -72464445 - MER105 DNA DNA -1 203 34 266 179 0 30 chr13 47281114 47281181 -72463717 - MER58A DNA MER1_type 0 112 48 609 160 9 0 chr13 47281181 47281287 -72463611 + FLAM_C SINE Alu 1 107 -36 230 275 0 0 chr13 47281489 47281558 -72463340 - AluSq SINE Alu -90 213 145 964 65 14 7 chr13 47282481 47282619 -72462279 - L1PA16 LINE L1 0 6166 6028 186 43 0 0 chr13 47282619 47282642 -72462256 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 4768 68 5 2 chr13 47282642 47283261 -72461637 - L1PA7 LINE L1 -13 6141 5521 1076 119 110 32 chr13 47283261 47283289 -72461609 - L1PA16 LINE L1 -127 6039 6015 186 43 0 0 chr13 47283289 47283312 -72461586 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 1076 119 110 32 chr13 47283312 47283502 -72461396 - L1PA16 LINE L1 -151 6015 5804 357 241 28 19 chr13 47283560 47283668 -72461230 - L1ME1 LINE L1 -23 6143 6035 21 57 0 0 chr13 47283864 47283899 -72460999 + AT_rich Low_complexity Low_complexity 1 35 0 309 299 24 47 chr13 47285401 47285528 -72459370 - L2 LINE L2 -18 3295 3172 1871 162 61 6 chr13 47286357 47286703 -72458195 - MLT1A1 LTR MaLR 0 365 1 283 298 119 62 chr13 47288206 47288605 -72456293 + L2 LINE L2 2624 3053 -219 24 0 0 0 chr13 47288671 47288695 -72456203 + AT_rich Low_complexity Low_complexity 1 24 0 234 273 65 26 chr13 47288724 47288801 -72456097 + L2 LINE L2 3193 3272 0 194 289 0 0 chr13 47289128 47289173 -72455725 + L2 LINE L2 2989 3033 -239 361 219 151 34 chr13 47289741 47289887 -72455011 + MER20B DNA MER1_type 1 163 -620 21 0 0 0 chr13 47290486 47290507 -72454391 + AT_rich Low_complexity Low_complexity 1 21 0 1096 212 45 101 chr13 47290767 47291145 -72453753 - L1ME2 LINE L1 -17 6147 5804 1795 159 0 25 chr13 47291145 47291459 -72453439 - AluJb SINE Alu -6 306 1 1096 212 45 101 chr13 47291459 47291595 -72453303 - L1ME2 LINE L1 -360 5804 5662 2306 249 76 18 chr13 47291875 47292638 -72452260 + L2 LINE L2 2291 3094 -219 877 220 35 20 chr13 47293101 47293301 -72451597 + L2 LINE L2 3106 3308 -5 35 33 0 17 chr13 47293831 47293857 -72451041 + AT_rich Low_complexity Low_complexity 1 26 -33 2346 89 7 0 chr13 47293857 47294150 -72450748 - AluSg SINE Alu -15 295 1 35 33 0 17 chr13 47294150 47294183 -72450715 + AT_rich Low_complexity Low_complexity 26 59 0 724 175 0 44 chr13 47294184 47294321 -72450577 - FLAM_C SINE Alu -12 131 1 8850 137 48 22 chr13 47294576 47296535 -72448363 - Ricksha DNA DNA -7 3239 1171 416 289 108 42 chr13 47296638 47296869 -72448029 + L2 LINE L2 1873 2120 -1194 631 208 0 16 chr13 47296869 47296994 -72447904 + MER5C DNA MER1_type 2 124 -200 27 62 0 0 chr13 47297563 47297611 -72447287 + AT_rich Low_complexity Low_complexity 1 48 0 374 226 161 50 chr13 47298193 47298392 -72446506 + MER5C DNA MER1_type 104 324 0 791 241 18 0 chr13 47298772 47298942 -72445956 - MER45A DNA AcHobo 0 178 6 328 336 29 0 chr13 47298946 47299050 -72445848 + L2 LINE L2 3163 3269 -3 815 124 16 0 chr13 47299050 47299179 -72445719 - MLT1B LTR MaLR -259 131 1 2050 155 0 0 chr13 47300150 47300447 -72444451 + AluSx SINE Alu 1 297 -15 928 268 73 42 chr13 47300505 47300987 -72443911 - MLT1J LTR MaLR -10 501 5 253 240 250 20 chr13 47301090 47301286 -72443612 + MLT1F LTR MaLR 124 364 -185 255 183 33 0 chr13 47301301 47301361 -72443537 + MLT1F LTR MaLR 481 542 0 641 289 19 33 chr13 47302747 47302958 -72441940 + MER63A DNA MER1_type 3 210 0 1623 324 78 13 chr13 47303011 47303792 -72441106 + HERVL LTR ERVL 1830 2661 -2993 223 157 229 0 chr13 47303833 47303903 -72440995 - MER5C DNA MER1_type 0 324 239 471 280 8 0 chr13 47304033 47304151 -72440747 - MER5C DNA MER1_type -200 124 6 1027 335 40 2 chr13 47304183 47304655 -72440243 + HERVL LTR ERVL 2806 3295 -2359 1193 246 43 0 chr13 47304665 47304941 -72439957 + MLT1E LTR MaLR 277 564 -29 2086 201 50 48 chr13 47304979 47305597 -72439301 + L1ME2 LINE L1 5546 6164 0 511 286 47 6 chr13 47307044 47307215 -72437683 - MIR SINE MIR -42 220 43 2207 106 0 0 chr13 47307444 47307748 -72437150 + AluSx SINE Alu 1 304 0 333 0 0 0 chr13 47308745 47308782 -72436116 + (TG)n Simple_repeat Simple_repeat 2 38 0 745 318 208 10 chr13 47309037 47309590 -72435308 - L2 LINE L2 0 3272 2613 1216 247 3 0 chr13 47310698 47310994 -72433904 - AluSp SINE Alu -2 301 5 1971 188 84 16 chr13 47311431 47311921 -72432977 - Charlie1b DNA MER1_type 0 523 1 974 93 93 0 chr13 47312845 47312995 -72431903 + MER5A DNA MER1_type 1 164 -25 238 261 23 11 chr13 47313002 47313090 -72431808 + L1M4 LINE L1 4494 4582 -1564 2053 128 16 57 chr13 47313114 47313480 -72431418 + L1MB2 LINE L1 5766 6115 -56 2126 108 0 4 chr13 47313480 47313789 -72431109 + AluSc SINE Alu 1 308 0 2053 128 16 57 chr13 47313789 47313844 -72431054 + L1MB2 LINE L1 6115 6171 0 28 0 0 0 chr13 47313844 47313872 -72431026 + AT_rich Low_complexity Low_complexity 1 28 0 854 127 30 22 chr13 47313874 47314008 -72430890 + AluJb SINE Alu 1 135 -177 26 30 0 0 chr13 47314012 47314045 -72430853 + AT_rich Low_complexity Low_complexity 1 33 0 276 222 0 0 chr13 47314162 47314225 -72430673 + L1MC5 LINE L1 7809 7871 -90 211 296 0 0 chr13 47314235 47314306 -72430592 + (CA)n Simple_repeat Simple_repeat 2 72 0 951 154 0 0 chr13 47314313 47314475 -72430423 + L1MB3 LINE L1 5851 6012 -171 297 0 0 0 chr13 47314492 47314525 -72430373 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 414 0 0 0 chr13 47314524 47314570 -72430328 + (GA)n Simple_repeat Simple_repeat 2 47 0 679 236 68 19 chr13 47314763 47314924 -72429974 - AluJo SINE Alu -143 169 1 308 364 23 34 chr13 47315996 47316172 -72428726 + MIR3 SINE MIR 32 205 -3 291 298 167 0 chr13 47316638 47316752 -72428146 + MIR SINE MIR 112 244 -18 462 248 40 0 chr13 47316916 47317065 -72427833 + L1ME4a LINE L1 5962 6116 -5 1077 263 45 53 chr13 47317225 47317825 -72427073 + L1MC5 LINE L1 7337 7931 -30 3158 142 99 14 chr13 47317961 47318519 -72426379 - MER6A DNA MER2_type 0 605 1 420 256 38 30 chr13 47319297 47319430 -72425468 - AluJb SINE Alu -177 135 2 2113 111 0 4 chr13 47319522 47319825 -72425073 - AluSc SINE Alu 0 302 1 1871 140 22 19 chr13 47319826 47320191 -72424707 - L1MB2 LINE L1 -40 6131 5766 238 261 23 11 chr13 47320215 47320303 -72424595 - L1M4 LINE L1 -1564 4582 4494 974 93 93 0 chr13 47320310 47320460 -72424438 - MER5A DNA MER1_type -25 164 1 606 51 0 0 chr13 47321368 47321446 -72423452 + (CA)n Simple_repeat Simple_repeat 1 78 0 11530 103 36 30 chr13 47324273 47327126 -72417772 + L1P3 LINE L1 66 2963 -3498 2157 124 0 7 chr13 47327338 47327644 -72417254 - AluSc SINE Alu -5 304 1 265 190 35 0 chr13 47328925 47328983 -72415915 - MER5B DNA MER1_type 0 178 119 1825 149 24 17 chr13 47328993 47329288 -72415610 + AluSx SINE Alu 5 301 -11 2594 41 0 25 chr13 47329288 47329604 -72415294 + AluY SINE Alu 1 308 -3 1356 213 75 57 chr13 47330219 47330442 -72414456 - MSTB2 LTR MaLR -7 450 233 2081 112 3 7 chr13 47330442 47330728 -72414170 - AluSg SINE Alu -25 285 1 1356 213 75 57 chr13 47330728 47330946 -72413952 - MSTB2 LTR MaLR -224 233 1 6775 129 29 6 chr13 47330957 47332100 -72412798 + L1MC1 LINE L1 5172 6333 0 314 257 81 14 chr13 47333043 47333117 -72411781 - L2 LINE L2 -23 3249 3171 2757 287 157 5 chr13 47335381 47336591 -72408307 + L2 LINE L2 1243 2646 -668 315 0 0 0 chr13 47336591 47336626 -72408272 + (CA)n Simple_repeat Simple_repeat 1 35 0 2757 287 157 5 chr13 47336626 47336649 -72408249 + L2 LINE L2 2646 2664 -650 426 96 24 12 chr13 47336649 47336655 -72408243 + (TC)n Simple_repeat Simple_repeat 1 5 -79 243 0 0 0 chr13 47336655 47336682 -72408216 + (CA)n Simple_repeat Simple_repeat 1 27 0 426 96 24 12 chr13 47336682 47336758 -72408140 + (TC)n Simple_repeat Simple_repeat 5 84 0 1000 245 64 50 chr13 47336892 47337328 -72407570 + L2 LINE L2 2872 3313 0 600 279 80 35 chr13 47337356 47337582 -72407316 + MIR SINE MIR 1 236 -26 535 259 25 43 chr13 47337819 47337981 -72406917 - L2 LINE L2 -3 3310 3152 242 191 0 16 chr13 47338366 47338429 -72406469 + L1ME4a LINE L1 6059 6120 -1 495 155 155 27 chr13 47338562 47338710 -72406188 - L1ME4a LINE L1 0 6121 5955 436 281 179 23 chr13 47338788 47339223 -72405675 - L1ME4a LINE L1 -301 5820 5318 25 0 0 0 chr13 47339433 47339458 -72405440 + AT_rich Low_complexity Low_complexity 1 25 0 181 239 75 0 chr13 47339975 47340042 -72404856 + L2 LINE L2 1610 1681 -1633 316 56 56 0 chr13 47340057 47340111 -72404787 + A-rich Low_complexity Low_complexity 1 57 0 186 43 0 0 chr13 47340121 47340144 -72404754 + (GGGGA)n Simple_repeat Simple_repeat 2 24 0 913 78 23 0 chr13 47340244 47340372 -72404526 + L1MA5 LINE L1 6168 6298 -2 513 205 71 104 chr13 47340374 47340675 -72404223 + L1M4 LINE L1 3772 4067 -2079 2249 80 42 0 chr13 47340898 47341186 -72403712 + AluY SINE Alu 1 300 -11 1704 238 23 10 chr13 47341247 47341633 -72403265 - MLT1J LTR MaLR -120 391 1 7106 175 162 30 chr13 47341711 47343239 -72401659 - MER52A LTR ERV1 0 1755 26 1943 141 0 33 chr13 47344070 47344374 -72400524 - AluJb SINE Alu -18 294 1 226 312 192 40 chr13 47344516 47345010 -72399888 + L2 LINE L2 2407 2975 -339 204 135 0 0 chr13 47345557 47345594 -72399304 + (T)n Simple_repeat Simple_repeat 1 37 0 232 210 0 160 chr13 47345622 47345722 -72399176 + MIR SINE MIR 48 131 -131 2156 98 39 0 chr13 47348937 47349222 -72395676 - AluSx SINE Alu -16 296 1 1850 166 20 0 chr13 47349573 47349869 -72395029 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr13 47350375 47350397 -72394501 + AT_rich Low_complexity Low_complexity 1 22 0 257 118 132 15 chr13 47351594 47351662 -72393236 - L1ME4a LINE L1 0 6121 6046 454 207 164 92 chr13 47351682 47352108 -72392790 - L1ME4a LINE L1 -148 5973 5517 210 277 0 0 chr13 47353731 47353778 -72391120 + MIR SINE MIR 98 144 -64 355 261 59 26 chr13 47353802 47353955 -72390943 - L1ME3A LINE L1 0 6170 6013 368 169 67 0 chr13 47353972 47354061 -72390837 - L1ME3A LINE L1 -211 5951 5857 262 293 8 49 chr13 47354595 47354718 -72390180 - MLT1K LTR MaLR -6 582 465 202 177 16 16 chr13 47354733 47354795 -72390103 + CT-rich Low_complexity Low_complexity 1 62 0 459 267 79 92 chr13 47354795 47355087 -72389811 - MLT1K LTR MaLR -158 430 143 1216 206 111 49 chr13 47355111 47355455 -72389443 - MLT1A1 LTR MaLR 0 365 1 457 278 94 17 chr13 47355851 47356031 -72388867 - L1ME3A LINE L1 -2159 5649 5456 1316 158 48 90 chr13 47356689 47356999 -72387899 - AluJo SINE Alu -15 297 1 2005 145 7 0 chr13 47357003 47357299 -72387599 - AluSx SINE Alu -12 300 3 510 241 194 24 chr13 47357703 47357900 -72386998 + MIR SINE MIR 36 261 -1 185 222 0 67 chr13 47357910 47357955 -72386943 + MIR SINE MIR 215 256 -6 467 264 8 8 chr13 47361464 47361585 -72383313 - LTR28 LTR ERV1 0 1020 900 1609 216 84 121 chr13 47361625 47362445 -72382453 - LTR28 LTR ERV1 -39 981 1 1342 230 37 74 chr13 47362577 47363034 -72381864 + L1MC5 LINE L1 6928 7367 -594 726 99 0 187 chr13 47363061 47363133 -72381765 - MER57A LTR ERV1 -264 139 116 2901 83 0 0 chr13 47363133 47363495 -72381403 - L1PA7 LINE L1 0 6154 5793 726 99 0 187 chr13 47363495 47363593 -72381305 - MER57A LTR ERV1 -287 116 1 1669 91 5 0 chr13 47363593 47363813 -72381085 - MER4B LTR ERV1 -389 221 1 321 352 6 19 chr13 47363932 47364094 -72380804 - L1M4 LINE L1 -2258 3888 3729 199 288 14 27 chr13 47364185 47364258 -72380640 - MIR3 SINE MIR -52 156 85 1467 188 40 24 chr13 47364303 47364483 -72380415 - AluJo SINE Alu -9 303 115 477 0 0 0 chr13 47364483 47364536 -72380362 + (TG)n Simple_repeat Simple_repeat 2 54 0 1467 188 40 24 chr13 47364536 47364653 -72380245 - AluJo SINE Alu -197 115 1 190 321 18 73 chr13 47364673 47364838 -72380060 + L2 LINE L2 2509 2664 -650 411 312 96 0 chr13 47364982 47365107 -72379791 + MIR3 SINE MIR 10 146 -62 3603 121 61 113 chr13 47365138 47365905 -72378993 - MER4E LTR ERV1 0 779 53 1390 143 0 0 chr13 47365905 47366114 -72378784 + AluSg/x SINE Alu 92 300 -10 2441 159 72 13 chr13 47366147 47366606 -72378292 - L1MA8 LINE L1 0 6291 5806 2979 142 43 2 chr13 47366607 47367492 -72377406 + L1M2 LINE L1 4853 5769 -522 1412 116 0 0 chr13 47367654 47367844 -72377054 - AluSq SINE Alu -123 190 1 208 290 108 32 chr13 47368117 47368210 -72376688 - MIR SINE MIR -78 130 31 2028 267 79 38 chr13 47368632 47368986 -72375912 - L2 LINE L2 -1106 2208 1870 2044 163 0 0 chr13 47368986 47369286 -72375612 + AluSx SINE Alu 1 300 -12 2028 267 79 38 chr13 47369286 47369668 -72375230 - L2 LINE L2 -1444 1870 1442 370 258 225 0 chr13 47370090 47370210 -72374688 + MIR SINE MIR 102 248 -14 249 261 34 0 chr13 47370286 47370374 -72374524 + L1MD3 LINE L1 7881 7971 -24 199 240 100 0 chr13 47370620 47370670 -72374228 - L2 LINE L2 -2918 396 342 432 308 125 44 chr13 47372887 47373208 -72371690 + L2 LINE L2 2859 3205 -108 651 249 103 28 chr13 47373291 47373544 -72371354 - L2 LINE L2 0 3313 3042 1541 159 26 55 chr13 47374342 47374650 -72370248 + AluJb SINE Alu 1 299 -13 216 139 116 0 chr13 47376431 47376474 -72368424 + L2 LINE L2 3262 3309 -4 476 130 0 0 chr13 47376866 47376935 -72367963 + (GGGGA)n Simple_repeat Simple_repeat 3 71 0 989 285 133 21 chr13 47376954 47377427 -72367471 + L2 LINE L2 1728 2253 -1061 823 231 57 44 chr13 47378043 47378500 -72366398 + MER115 DNA AcHobo 140 691 -2 547 296 110 19 chr13 47378507 47378520 -72366378 + L2 LINE L2 2289 2299 -1015 2487 64 3 0 chr13 47378520 47378815 -72366083 + AluSp SINE Alu 1 296 -17 547 296 110 19 chr13 47378815 47379109 -72365789 + L2 LINE L2 2299 2624 -690 288 0 0 0 chr13 47379183 47379215 -72365683 + (CA)n Simple_repeat Simple_repeat 2 33 0 243 0 0 0 chr13 47379214 47379241 -72365657 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 1822 174 83 60 chr13 47380172 47380353 -72364545 + MLT1C LTR MaLR 3 178 -289 2320 77 0 3 chr13 47380353 47380639 -72364259 + AluSg SINE Alu 5 289 -21 1822 174 83 60 chr13 47380639 47380893 -72364005 + MLT1C LTR MaLR 178 448 -19 897 253 88 5 chr13 47381025 47381318 -72363580 + L1ME2 LINE L1 5818 6135 -29 4296 35 19 0 chr13 47381498 47381977 -72362921 - LTR2B LTR ERV1 -2 488 1 3809 143 61 53 chr13 47381977 47382744 -72362154 - MER4D LTR ERV1 -130 773 1 247 287 9 52 chr13 47382813 47382928 -72361970 - MIR SINE MIR -56 206 97 22 0 0 0 chr13 47383018 47383040 -72361858 + AT_rich Low_complexity Low_complexity 1 22 0 2431 123 74 42 chr13 47383092 47383524 -72361374 - Tigger2 DNA MER2_type 0 2718 2273 258 169 169 0 chr13 47383514 47383573 -72361325 - Tigger2 DNA MER2_type -2649 69 1 * 2205 145 20 6 chr13 47384543 47384895 -72360003 + MLT1A1 LTR MaLR 1 357 -8 3587 71 0 11 chr13 47384994 47385447 -72359451 + LTR7 LTR ERV1 1 448 -2 187 286 13 13 chr13 47385610 47385687 -72359211 + MIR SINE MIR 36 112 -150 1123 188 68 34 chr13 47385923 47386189 -72358709 - ORSL DNA AcHobo 0 275 1 297 315 0 18 chr13 47386493 47386575 -72358323 + (TA)n Simple_repeat Simple_repeat 2 83 -27 4209 104 7 0 chr13 47386575 47387125 -72357773 + MER41A LTR ERV1 1 554 0 297 315 0 18 chr13 47387125 47387153 -72357745 + (TA)n Simple_repeat Simple_repeat 83 110 0 3414 140 24 34 chr13 47387181 47387772 -72357126 + MER34C LTR ERV1 1 585 0 702 249 64 49 chr13 47387799 47388064 -72356834 - HAL1 LINE L1 -81 2426 2158 497 202 0 0 chr13 47388073 47388157 -72356741 - LTR8 LTR ERV1 0 691 608 5059 147 63 1 chr13 47388282 47389059 -72355839 + LTR1B LTR ERV1 2 826 0 1946 199 82 23 chr13 47389108 47389706 -72355192 + MER39 LTR ERV1 1 707 0 651 183 17 0 chr13 47390198 47390318 -72354580 - L2 LINE L2 0 3313 3192 198 265 73 15 chr13 47390790 47390858 -72354040 - L2 LINE L2 -4 3309 3238 969 133 0 0 chr13 47391411 47391546 -72353352 - AluJo/FRAM SINE Alu -11 301 167 602 192 0 0 chr13 47391549 47391648 -72353250 - AluJ/FLAM SINE Alu -212 100 2 582 258 113 20 chr13 47391877 47392125 -72352773 - L2 LINE L2 0 3313 3043 1093 123 0 109 chr13 47392327 47392538 -72352360 + MER5A DNA MER1_type 1 188 -1 900 128 17 0 chr13 47392879 47393028 -72351870 - ERVL LTR ERVL -3289 2216 2043 426 108 0 0 chr13 47393040 47393114 -72351784 + (GA)n Simple_repeat Simple_repeat 2 75 0 1973 182 121 14 chr13 47393119 47393532 -72351366 - MLT2B1 LTR ERVL -60 460 4 1489 191 4 8 chr13 47393535 47393791 -72351107 - ERVL LTR ERVL -3685 2079 1825 1506 164 94 30 chr13 47393995 47394324 -72350574 - L1MB8 LINE L1 -16 6162 5813 21479 150 35 14 chr13 47394334 47394979 -72349919 - L1MA3 LINE L1 0 7724 7094 2276 105 10 0 chr13 47394979 47395274 -72349624 + AluSq SINE Alu 1 298 -15 21479 150 35 14 chr13 47395274 47396697 -72348201 - L1MA3 LINE L1 -630 7094 5703 2071 147 0 0 chr13 47396697 47396997 -72347901 - AluSx SINE Alu -12 300 1 21479 150 35 14 chr13 47396997 47402439 -72342459 - L1MA3 LINE L1 -2021 5703 1 723 81 0 0 chr13 47402435 47402534 -72342364 - L1MB8 LINE L1 -350 5828 5730 * 264 259 19 0 chr13 47402534 47402588 -72342310 - LTR48B LTR ERV1 0 644 590 1025 188 31 0 chr13 47402620 47402812 -72342086 - L1MB8 LINE L1 -618 5566 5369 635 144 33 0 chr13 47402812 47402933 -72341965 + FLAM_A SINE Alu 26 149 0 3171 116 49 61 chr13 47402933 47403520 -72341378 - MER39B LTR ERV1 -68 585 6 1906 197 63 40 chr13 47403524 47404103 -72340795 - L1M4 LINE L1 -452 5732 5133 2276 112 3 0 chr13 47404103 47404407 -72340491 - AluSp SINE Alu -7 306 2 1906 197 63 40 chr13 47404407 47404702 -72340196 - L1M4 LINE L1 -1051 5133 4846 1950 219 27 22 chr13 47405740 47406146 -72338752 - MER77 LTR ERV1 -2 603 196 1243 168 35 10 chr13 47406222 47406425 -72338473 - MER77 LTR ERV1 -397 208 1 823 169 107 23 chr13 47406621 47406798 -72338100 + LTR47A LTR ERVL 261 452 0 372 338 53 32 chr13 47408484 47408920 -72335978 + HERVL18 LTR ERVL 1666 2097 -1321 1551 181 0 15 chr13 47408952 47409160 -72335738 - AluJb SINE Alu -56 256 51 4619 80 14 4 chr13 47409160 47409723 -72335175 + MER61E LTR ERV1 1 569 0 1551 181 0 15 chr13 47409723 47409774 -72335124 - AluJb SINE Alu -261 51 1 2418 109 0 0 chr13 47409779 47410091 -72334807 - AluSx SINE Alu 0 312 1 625 294 21 24 chr13 47410124 47410390 -72334508 + HERVL18 LTR ERVL 2033 2323 -1095 456 194 37 19 chr13 47410413 47410521 -72334377 + MER4C LTR ERV1 5 114 -351 260 231 0 0 chr13 47410605 47410657 -72334241 + MER4A LTR ERV1 136 187 -477 1468 229 36 87 chr13 47410666 47410903 -72333995 + LTR34 LTR ERV1 202 400 -299 1682 188 16 10 chr13 47410903 47411207 -72333691 - AluJo SINE Alu -4 308 3 1468 229 36 87 chr13 47411207 47411489 -72333409 + LTR34 LTR ERV1 400 695 -4 2992 86 11 0 chr13 47411635 47412006 -72332892 - THE1C LTR MaLR 0 375 1 576 347 65 48 chr13 47412291 47413614 -72331284 + HERVL18 LTR ERVL 2728 4079 -1264 275 234 89 81 chr13 47414298 47414422 -72330476 + MER4B-int LTR ERV1 5633 5757 -1365 251 338 88 34 chr13 47414631 47414835 -72330063 + MER4B-int LTR ERV1 5997 6211 -911 510 395 7 3 chr13 47414987 47415276 -72329622 + MER4B-int LTR ERV1 6396 6685 -437 567 198 0 52 chr13 47415453 47415569 -72329329 + MER4B-int LTR ERV1 5968 6077 -681 962 169 79 0 chr13 47415816 47415994 -72328904 + LTR47A LTR ERVL 261 452 0 3602 95 12 16 chr13 47416053 47416548 -72328350 + LTR15 LTR ERV1 1 493 0 21 36 0 0 chr13 47416778 47416806 -72328092 + AT_rich Low_complexity Low_complexity 1 28 0 201 274 0 20 chr13 47417115 47417166 -72327732 - L2 LINE L2 -12 3260 3211 245 29 0 29 chr13 47417363 47417398 -72327500 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 948 248 173 18 chr13 47417399 47417936 -72326962 - L2 LINE L2 -14 3299 2688 2676 81 32 46 chr13 47417943 47417991 -72326907 - THE1B LTR MaLR 0 364 317 2034 143 0 7 chr13 47417991 47418291 -72326607 - AluSx SINE Alu -14 298 1 2676 81 32 46 chr13 47418291 47418611 -72326287 - THE1B LTR MaLR -47 317 1 707 213 8 0 chr13 47418654 47418781 -72326117 - FRAM SINE Alu -48 128 1 2440 95 0 0 chr13 47418831 47419135 -72325763 + AluSc SINE Alu 3 306 -3 383 247 40 40 chr13 47419188 47419338 -72325560 - L2 LINE L2 0 3313 3164 779 178 35 47 chr13 47419421 47419590 -72325308 - MLT2D LTR ERVL 0 414 248 2696 119 19 67 chr13 47419593 47420214 -72324684 - MER4E LTR ERV1 -1 765 1 959 221 21 21 chr13 47420268 47420508 -72324390 - MLT2D LTR ERVL -169 245 6 213 295 74 42 chr13 47420541 47420636 -72324262 - L2 LINE L2 -223 3049 2952 655 215 74 6 chr13 47421926 47422089 -72322809 - MIR SINE MIR 0 262 89 316 247 35 0 chr13 47422487 47422572 -72322326 - MER5A DNA MER1_type -76 113 26 2065 172 23 48 chr13 47422759 47423155 -72321743 + MLT1B LTR MaLR 1 386 -4 464 237 50 14 chr13 47423583 47423722 -72321176 + LTR67 LTR ERVL 408 551 -6 1685 159 65 17 chr13 47423983 47424189 -72320709 + LTR64 LTR ERVK 5 200 -358 2124 117 3 7 chr13 47424189 47424487 -72320411 + AluSx SINE Alu 1 297 -15 1685 159 65 17 chr13 47424487 47424720 -72320178 + LTR64 LTR ERVK 200 529 -29 3894 172 27 56 chr13 47424871 47425768 -72319130 + LTR67-int LTR ERVL 310 1180 -4163 627 196 103 58 chr13 47425780 47426004 -72318894 + LOR1-int LTR ERV1 1461 1694 -6426 344 31 31 31 chr13 47426010 47426074 -72318824 + (TA)n Simple_repeat Simple_repeat 1 64 0 286 330 10 0 chr13 47426086 47426186 -72318712 - L2 LINE L2 -463 2851 2751 329 194 0 15 chr13 47426207 47426274 -72318624 - MIR SINE MIR -6 256 191 743 258 36 10 chr13 47426305 47426499 -72318399 + MIR SINE MIR 26 224 -38 189 336 39 16 chr13 47426747 47426875 -72318023 - L2 LINE L2 -281 2991 2861 1278 194 72 25 chr13 47427091 47427369 -72317529 + AluJo SINE Alu 1 291 -21 869 292 136 45 chr13 47427396 47428025 -72316873 - L2 LINE L2 -4 3309 2738 1269 153 40 179 chr13 47428025 47428449 -72316449 + MLT1A1 LTR MaLR 1 365 0 2331 169 98 7 chr13 47428450 47428869 -72316029 - MSTB2 LTR MaLR 0 457 1 869 292 136 45 chr13 47428869 47428987 -72315911 - L2 LINE L2 -574 2739 2496 264 254 30 0 chr13 47429035 47429102 -72315796 - MLT1J LTR MaLR -61 450 382 574 116 0 0 chr13 47429125 47429211 -72315687 + MLT-int LTR MaLR 1429 1514 -221 554 279 165 56 chr13 47429214 47429525 -72315373 - L2 LINE L2 -820 2494 2129 2242 71 4 4 chr13 47429525 47429836 -72315062 + AluY SINE Alu 1 311 0 554 279 165 56 chr13 47429836 47429918 -72314980 - L2 LINE L2 -1185 2129 2057 723 188 125 40 chr13 47429926 47430198 -72314700 + L1MC5 LINE L1 7635 7929 -32 2234 289 110 29 chr13 47430214 47431308 -72313590 - L2 LINE L2 -1248 2066 858 923 152 0 0 chr13 47431308 47431440 -72313458 + FLAM_C SINE Alu 1 132 -1 2234 289 110 29 chr13 47431440 47431588 -72313310 - L2 LINE L2 -2456 858 723 237 191 0 0 chr13 47432247 47432289 -72312609 - MLT2C2 LTR ERVL -1 463 422 231 167 0 0 chr13 47432289 47432331 -72312567 + (CA)n Simple_repeat Simple_repeat 1 42 0 399 180 56 11 chr13 47432345 47432434 -72312464 - MLT2C1 LTR ERVL -57 340 248 1094 153 159 52 chr13 47432434 47432742 -72312156 + MER4A LTR ERV1 1 341 -323 611 130 210 22 chr13 47432815 47432953 -72311945 + MER4C LTR ERV1 302 465 0 1279 146 190 4 chr13 47432953 47433221 -72311677 - MLT2C2 LTR ERVL -146 318 1 228 317 89 24 chr13 47433646 47433769 -72311129 - MIR SINE MIR -21 241 111 1009 156 7 7 chr13 47433773 47434046 -72310852 - MLT1A1 LTR MaLR -2 363 1 326 217 14 0 chr13 47434742 47434811 -72310087 - L2 LINE L2 -1 3312 3243 539 258 101 56 chr13 47435985 47436211 -72308687 - LTR33A LTR ERVL -61 462 248 2282 131 46 22 chr13 47436211 47436577 -72308321 + THE1C LTR MaLR 1 375 0 539 258 101 56 chr13 47436577 47436744 -72308154 - LTR33A LTR ERVL -275 248 13 1355 229 34 26 chr13 47438331 47438681 -72306217 - MER4D LTR ERV1 -8 895 543 482 254 25 25 chr13 47438678 47438851 -72306047 - MER4E LTR ERV1 -590 282 1 * 1128 212 183 59 chr13 47439451 47439894 -72305004 - MLT1D LTR MaLR -7 498 1 2243 112 7 7 chr13 47440000 47440305 -72304593 - AluSq SINE Alu -8 305 1 22 35 0 0 chr13 47441162 47441191 -72303707 + AT_rich Low_complexity Low_complexity 1 29 0 2232 95 7 0 chr13 47441191 47441485 -72303413 - AluSg1 SINE Alu 0 309 14 1566 197 13 17 chr13 47441485 47441784 -72303114 - AluJb SINE Alu -14 298 1 1780 107 0 4 chr13 47441831 47442065 -72302833 - AluSg SINE Alu -77 233 1 2117 128 14 4 chr13 47442334 47442693 -72302205 - L1MA5 LINE L1 -303 5997 5634 1076 193 0 68 chr13 47442685 47442981 -72301917 - L1 LINE L1 -1727 4419 4144 * 446 296 280 23 chr13 47442981 47443624 -72301274 - L2 LINE L2 -690 2624 1817 486 0 0 0 chr13 47444312 47444366 -72300532 + (TG)n Simple_repeat Simple_repeat 1 54 0 306 0 0 0 chr13 47444468 47444502 -72300396 + (TA)n Simple_repeat Simple_repeat 2 35 0 2113 118 3 0 chr13 47444502 47444789 -72300109 - AluSq SINE Alu -25 288 1 22 0 0 0 chr13 47444883 47444905 -72299993 + AT_rich Low_complexity Low_complexity 1 22 0 1349 122 25 0 chr13 47444913 47445110 -72299788 - L1PA10 LINE L1 -16 6152 5951 405 58 0 0 chr13 47445116 47445168 -72299730 + (TG)n Simple_repeat Simple_repeat 2 53 0 2451 121 6 8 chr13 47445207 47445563 -72299335 - L1PA15 LINE L1 -5 6160 5806 196 326 61 0 chr13 47445817 47445866 -72299032 - L2 LINE L2 -27 3245 3194 393 329 24 6 chr13 47445964 47446128 -72298770 - MLT1L LTR MaLR -105 510 344 25 31 0 0 chr13 47446135 47446167 -72298731 + AT_rich Low_complexity Low_complexity 1 32 0 284 323 0 0 chr13 47446199 47446292 -72298606 - MLT1L LTR MaLR -361 254 162 303 235 60 179 chr13 47446850 47446985 -72297913 + MIR SINE MIR 34 131 -131 1133 78 0 0 chr13 47446985 47447127 -72297771 + L1PA8 LINE L1 6031 6172 0 303 235 60 179 chr13 47447127 47447225 -72297673 + MIR SINE MIR 131 239 -23 181 243 27 0 chr13 47447192 47447229 -72297669 + L2 LINE L2 3211 3248 -24 * 242 113 0 38 chr13 47448099 47448152 -72296746 + (CCG)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr13 47449449 47449473 -72295425 + AT_rich Low_complexity Low_complexity 1 24 0 814 168 0 8 chr13 47450147 47450278 -72294620 + FLAM_A SINE Alu 1 130 -3 1716 172 13 7 chr13 47450281 47450584 -72294314 + AluJo SINE Alu 1 305 -7 500 289 71 40 chr13 47450611 47450864 -72294034 + MIR SINE MIR 2 262 0 254 224 72 40 chr13 47451592 47451717 -72293181 - L1ME4a LINE L1 0 6121 5993 2045 89 19 57 chr13 47451729 47452043 -72292855 + AluSx SINE Alu 1 302 -10 1095 156 0 0 chr13 47452358 47452525 -72292373 + AluJb SINE Alu 135 301 -11 2163 111 10 0 chr13 47452528 47452826 -72292072 + AluSx SINE Alu 1 301 -11 297 146 18 0 chr13 47452920 47452975 -72291923 - MIR SINE MIR -120 142 87 609 230 81 124 chr13 47453009 47453453 -72291445 - L1ME4a LINE L1 -176 5945 5521 418 333 119 0 chr13 47454538 47454715 -72290183 + MIR SINE MIR 16 213 -49 21 0 0 0 chr13 47455003 47455024 -72289874 + AT_rich Low_complexity Low_complexity 1 21 0 341 309 43 15 chr13 47455193 47455362 -72289536 + MIR SINE MIR 2 178 -69 1723 117 43 8 chr13 47455487 47455743 -72289155 - Tigger3(Golem) DNA MER2_type 0 3038 2774 707 257 86 38 chr13 47455748 47455856 -72289042 - L1MCc LINE L1 -3546 3395 3294 2384 71 14 0 chr13 47455856 47456153 -72288745 - AluSg SINE Alu -9 301 1 707 257 86 38 chr13 47456153 47456383 -72288515 - L1MCc LINE L1 -3647 3294 3041 506 275 58 36 chr13 47456407 47456683 -72288215 - L1MCc LINE L1 -6125 298 17 246 241 0 23 chr13 47456859 47456946 -72287952 - L1M4 LINE L1 -3024 3122 3038 3285 207 51 53 chr13 47457397 47457896 -72287002 - L1ME4a LINE L1 -886 5260 4762 2549 51 3 6 chr13 47457896 47458208 -72286690 - AluY SINE Alu 0 311 1 3285 207 51 53 chr13 47458208 47458655 -72286243 - L1ME4a LINE L1 -1384 4762 4316 2128 79 0 4 chr13 47458682 47458947 -72285951 + AluSq SINE Alu 5 268 -45 444 276 21 14 chr13 47458955 47459100 -72285798 - L1MA9 LINE L1 -164 6148 6003 4013 175 26 18 chr13 47459105 47459877 -72285021 - L1P LINE L1 -1411 4735 3958 2223 95 13 0 chr13 47459878 47460184 -72284714 - L1P5 LINE L1 -367 5787 5478 444 67 0 0 chr13 47460880 47460940 -72283958 + (CA)n Simple_repeat Simple_repeat 1 60 0 2210 97 3 0 chr13 47464677 47464977 -72279921 + AluSg SINE Alu 1 301 -9 423 175 68 0 chr13 47465378 47465478 -72279420 - L1MA9 LINE L1 -354 5943 5838 23 33 0 0 chr13 47465501 47465531 -72279367 + GC_rich Low_complexity Low_complexity 1 30 0 1328 143 25 31 chr13 47465549 47465699 -72279199 - L1P5 LINE L1 -665 5489 5340 2191 116 0 0 chr13 47465699 47466001 -72278897 + AluSq SINE Alu 1 302 -11 1328 143 25 31 chr13 47466001 47466231 -72278667 - L1P5 LINE L1 -814 5340 5104 1317 152 5 9 chr13 47466243 47466467 -72278431 - L1MA9 LINE L1 -371 5941 5719 * 4617 228 26 7 chr13 47466447 47467628 -72277270 - L1M4 LINE L1 -1785 4361 3158 4496 131 25 37 chr13 47468176 47468952 -72275946 - L1MA4 LINE L1 -1 6299 5534 366 270 0 35 chr13 47468978 47469093 -72275805 - L1ME1 LINE L1 -272 5894 5784 2406 100 9 3 chr13 47469101 47469430 -72275468 - L1PA13 LINE L1 -14 6149 5819 682 289 68 19 chr13 47469716 47470024 -72274874 - L1MC4a LINE L1 -1906 5902 5580 655 304 80 28 chr13 47470054 47470340 -72274558 + L2 LINE L2 3013 3313 0 185 0 40 0 chr13 47470466 47470491 -72274407 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 180 215 31 46 chr13 47470543 47470608 -72274290 + L2 LINE L2 1365 1428 -1886 21 57 0 0 chr13 47473247 47473282 -72271616 + AT_rich Low_complexity Low_complexity 1 35 0 366 185 148 0 chr13 47473912 47473993 -72270905 + L1MA9 LINE L1 4 96 -6045 6570 192 48 7 chr13 47474005 47475420 -72269478 + L1MA9 LINE L1 2764 4236 -1974 1360 166 105 0 chr13 47475421 47475668 -72269230 + MSTC LTR MaLR 1 273 -155 1968 143 13 3 chr13 47475678 47475992 -72268906 + L1MA9 LINE L1 5531 5847 -529 340 238 12 0 chr13 47475992 47476072 -72268826 - Tigger5 DNA MER2_type 0 2323 2243 265 175 0 0 chr13 47476089 47476129 -72268769 - Tigger5 DNA MER2_type -2277 46 7 2738 129 38 62 chr13 47476130 47476406 -72268492 + L1MA9 LINE L1 5840 6121 -255 1469 166 10 55 chr13 47476406 47476713 -72268185 + AluJo SINE Alu 9 301 -11 2738 129 38 62 chr13 47476713 47476881 -72268017 + L1MA9 LINE L1 6121 6271 -105 2044 154 27 15 chr13 47476881 47477212 -72267686 - MER44D DNA MER2_type 0 609 5 2738 129 38 62 chr13 47477212 47477316 -72267582 + L1MA9 LINE L1 6271 6376 0 293 282 86 17 chr13 47477852 47477969 -72266929 - L1ME4a LINE L1 -33 6088 5964 445 281 57 12 chr13 47477975 47478221 -72266677 - L1ME4a LINE L1 -188 5933 5677 407 192 0 0 chr13 47478228 47478301 -72266597 - L1MA1 LINE L1 0 6302 6230 28320 68 4 0 chr13 47478965 47482670 -72262228 - L1P LINE L1 -2414 3732 13 1726 216 67 22 chr13 47482768 47483216 -72261682 + L1M4 LINE L1 4744 5211 -935 28 0 0 0 chr13 47483670 47483698 -72261200 + AT_rich Low_complexity Low_complexity 1 28 0 3040 207 44 19 chr13 47483780 47484484 -72260414 - L1ME1 LINE L1 -5 6161 5440 336 308 57 57 chr13 47484849 47485008 -72259890 - MIR SINE MIR 0 262 104 213 273 0 15 chr13 47485009 47485075 -72259823 + (TGAA)n Simple_repeat Simple_repeat 3 67 0 748 200 84 5 chr13 47487503 47487693 -72257205 + L1MC4 LINE L1 6459 6663 -1379 180 0 0 0 chr13 47488958 47488978 -72255920 + (T)n Simple_repeat Simple_repeat 1 20 0 360 0 0 0 chr13 47489230 47489270 -72255628 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr13 47489493 47489521 -72255377 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 47490559 47490587 -72254311 + AT_rich Low_complexity Low_complexity 1 28 0 182 250 104 0 chr13 47490990 47491038 -72253860 - L2 LINE L2 -4 3268 3216 22 0 0 0 chr13 47491448 47491470 -72253428 + AT_rich Low_complexity Low_complexity 1 22 0 226 187 122 93 chr13 47492138 47492245 -72252653 - HAL1b LINE L1 -7 1341 1232 16401 150 27 12 chr13 47492253 47493446 -72251452 + L1MA1 LINE L1 3248 4422 -3299 6342 167 44 21 chr13 47493446 47494531 -72250367 - L1PA14 LINE L1 -17 6144 5085 2174 116 3 0 chr13 47494531 47494824 -72250074 - AluSx SINE Alu -18 294 1 6342 167 44 21 chr13 47494824 47495849 -72249049 - L1PA14 LINE L1 -1076 5085 4008 16401 150 27 12 chr13 47495849 47499061 -72245837 + L1MA1 LINE L1 4422 7721 0 2420 271 105 20 chr13 47499066 47500204 -72244694 - HAL1b LINE L1 -111 1237 4 392 295 22 7 chr13 47500373 47500512 -72244386 + MER117 DNA MER1_type 4 144 -53 395 342 32 26 chr13 47500664 47500819 -72244079 - L2 LINE L2 0 3272 3117 560 134 42 113 chr13 47500862 47501004 -72243894 - LTR8A LTR ERV1 0 727 596 76 100 0 0 chr13 47502228 47502479 -72242419 + AT_rich Low_complexity Low_complexity 1 251 0 320 388 6 12 chr13 47503008 47503168 -72241730 - L2 LINE L2 -6 3307 3149 1634 195 96 54 chr13 47504199 47504759 -72240139 - L1MC5 LINE L1 -50 7911 7328 2282 89 0 16 chr13 47504791 47505095 -72239803 - AluSg SINE Alu -11 299 1 27 49 0 0 chr13 47505183 47505224 -72239674 + AT_rich Low_complexity Low_complexity 1 41 0 1852 162 0 19 chr13 47506117 47506431 -72238467 + AluJo SINE Alu 1 308 -4 276 229 72 24 chr13 47506595 47506678 -72238220 - MIR3 SINE MIR -11 197 111 1336 142 29 8 chr13 47506957 47507197 -72237701 + Tigger2 DNA MER2_type 1 245 -2473 702 144 70 53 chr13 47507258 47507445 -72237453 + Tigger2 DNA MER2_type 2451 2640 -78 965 173 6 0 chr13 47507454 47507616 -72237282 + FAM SINE Alu 1 46 -3 406 186 0 43 chr13 47507616 47507686 -72237212 + Tigger2 DNA MER2_type 2649 2715 -3 387 208 14 0 chr13 47508564 47508636 -72236262 - L2 LINE L2 0 3313 3241 2370 86 3 0 chr13 47509684 47509987 -72234911 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr13 47511470 47511491 -72233407 + AT_rich Low_complexity Low_complexity 1 21 0 2311 85 0 0 chr13 47511573 47511866 -72233032 + AluSq SINE Alu 1 293 -20 1016 318 87 43 chr13 47512044 47512873 -72232025 + L2 LINE L2 2452 3313 0 192 330 136 19 chr13 47512954 47513057 -72231841 - L2 LINE L2 -240 3032 2918 4521 171 49 1 chr13 47513088 47513877 -72231021 - MER21B LTR ERV1 -36 827 1 272 188 0 0 chr13 47514168 47514216 -72230682 + MER5B DNA MER1_type 1 48 -130 249 327 79 52 chr13 47514483 47514636 -72230262 - L2 LINE L2 -1070 2244 2097 1957 150 36 27 chr13 47514636 47514970 -72229928 + MER1B DNA MER1_type 1 337 0 249 327 79 52 chr13 47514970 47515228 -72229670 - L2 LINE L2 -1217 2097 1818 2149 90 33 0 chr13 47515228 47515527 -72229371 + AluSx SINE Alu 1 309 -3 249 327 79 52 chr13 47515527 47515557 -72229341 - L2 LINE L2 -1496 1818 1790 400 246 65 87 chr13 47516543 47516919 -72227979 - L1MEc LINE L1 -833 1743 1440 2444 117 0 3 chr13 47517687 47518037 -72226861 - L1PA16 LINE L1 -136 6030 5682 30 27 0 0 chr13 47518402 47518439 -72226459 + AT_rich Low_complexity Low_complexity 1 37 0 1739 174 3 3 chr13 47518439 47518727 -72226171 - AluSq SINE Alu -25 288 1 200 132 26 0 chr13 47518847 47518885 -72226013 + (TATAA)n Simple_repeat Simple_repeat 5 43 0 2198 107 7 0 chr13 47519069 47519368 -72225530 + AluSx SINE Alu 3 303 -9 351 288 102 8 chr13 47520287 47520405 -72224493 + MIR SINE MIR 7 135 -127 6438 137 58 21 chr13 47520559 47521745 -72223153 - Tigger3b DNA MER2_type 0 1231 2 187 211 88 53 chr13 47521970 47522027 -72222871 + MIR SINE MIR 174 232 -30 716 191 0 8 chr13 47522251 47522382 -72222516 + FLAM_C SINE Alu 2 131 -2 2193 112 0 0 chr13 47522528 47522832 -72222066 + AluSc SINE Alu 1 304 -5 23 97 0 0 chr13 47522934 47523006 -72221892 + AT_rich Low_complexity Low_complexity 1 72 0 6808 48 7 0 chr13 47524552 47525886 -72219012 - L1PA5 LINE L1 -6 6148 4810 190 291 105 23 chr13 47526761 47526847 -72218051 - L2 LINE L2 -1 3312 3220 504 189 27 9 chr13 47527303 47527414 -72217484 - L1ME3A LINE L1 -14 6156 6044 205 300 17 0 chr13 47527707 47527767 -72217131 + L3b LINE CR1 1393 1453 -130 293 293 93 21 chr13 47527990 47528130 -72216768 + L2 LINE L2 2601 2750 -564 1481 246 84 21 chr13 47528302 47528732 -72216166 + L1ME LINE L1 197 653 -5417 720 140 26 0 chr13 47528774 47528888 -72216010 + AluJo/FLAM SINE Alu 1 117 -185 1001 160 16 41 chr13 47528888 47528968 -72215930 + AluJo SINE Alu 2 189 -123 21 36 0 0 chr13 47528988 47529016 -72215882 + AT_rich Low_complexity Low_complexity 1 28 0 969 185 23 6 chr13 47529044 47529217 -72215681 - Tigger3(Golem) DNA MER2_type 0 3036 2861 * 4221 173 75 22 chr13 47529216 47530163 -72214735 + Charlie1 DNA MER1_type 1612 2608 -153 1260 162 16 76 chr13 47530251 47530566 -72214332 + L1MB8 LINE L1 5855 6150 -28 690 136 37 37 chr13 47530567 47530729 -72214169 + Charlie1 DNA MER1_type 2600 2761 0 529 271 76 34 chr13 47531044 47531280 -72213618 - L2 LINE L2 -825 2489 2244 633 250 159 9 chr13 47531298 47531518 -72213380 - MIR SINE MIR -8 254 2 630 308 110 47 chr13 47531519 47531725 -72213173 - L2 LINE L2 -1101 2213 2022 2098 124 3 10 chr13 47531725 47532057 -72212841 + AluSx SINE Alu 3 312 0 630 308 110 47 chr13 47532057 47532386 -72212512 - L2 LINE L2 -1292 2022 1644 413 200 227 22 chr13 47532389 47532574 -72212324 - MLT1H1 LTR MaLR -7 548 326 1580 188 31 3 chr13 47532718 47533006 -72211892 + AluJo SINE Alu 1 296 -16 2967 218 42 46 chr13 47533481 47534312 -72210586 - L1MEc LINE L1 -3684 2531 1698 663 188 8 0 chr13 47534312 47534429 -72210469 + FLAM_C SINE Alu 1 118 -15 2967 218 42 46 chr13 47534429 47534453 -72210445 - L1MEc LINE L1 -4517 1698 1675 2348 92 0 7 chr13 47534453 47534757 -72210141 - AluSg SINE Alu -8 302 1 2967 218 42 46 chr13 47534757 47534937 -72209961 - L1MEc LINE L1 -4540 1675 1541 2275 119 0 0 chr13 47534946 47535248 -72209650 - AluSx SINE Alu -10 302 1 4295 224 25 23 chr13 47535282 47536409 -72208489 - L1MEc LINE L1 -5224 1172 44 13242 79 21 29 chr13 47536787 47538805 -72206093 + L1PA7 LINE L1 4 2044 -4417 6951 64 6 0 chr13 47538805 47540486 -72204412 + L1PA7 LINE L1 4783 6469 0 24 0 0 0 chr13 47541048 47541072 -72203826 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr13 47541369 47541397 -72203501 + AT_rich Low_complexity Low_complexity 1 28 0 210 286 229 14 chr13 47541435 47541505 -72203393 - MIR SINE MIR -155 107 23 622 273 164 5 chr13 47543040 47543260 -72201638 - MIR SINE MIR 0 262 8 343 232 53 21 chr13 47543406 47543501 -72201397 - MIR SINE MIR -70 192 95 321 187 220 11 chr13 47543505 47543596 -72201302 + MIR SINE MIR 83 192 -70 1716 156 20 17 chr13 47545208 47545510 -72199388 - AluJo SINE Alu -9 303 1 922 151 84 39 chr13 47546454 47546633 -72198265 - MER5A DNA MER1_type 0 189 3 961 167 0 0 chr13 47546705 47546855 -72198043 + AluJb SINE Alu 152 301 -11 437 285 102 12 chr13 47547230 47547365 -72197533 + HAL1 LINE L1 1246 1367 -1140 2052 123 7 3 chr13 47547365 47547658 -72197240 - AluSg SINE Alu -15 295 2 437 285 102 12 chr13 47547658 47547778 -72197120 + HAL1 LINE L1 1367 1524 -983 260 347 40 17 chr13 47547799 47547972 -72196926 + HAL1 LINE L1 1611 1787 -720 187 125 175 0 chr13 47548225 47548265 -72196633 - L2 LINE L2 -4 3309 3263 638 213 69 6 chr13 47548359 47548519 -72196379 + MER58B DNA MER1_type 170 339 -2 1846 231 55 18 chr13 47548521 47548933 -72195965 - L1MC4a LINE L1 -1652 6156 5668 267 103 0 0 chr13 47548933 47548972 -72195926 + (TG)n Simple_repeat Simple_repeat 2 40 0 1846 231 55 18 chr13 47548972 47549140 -72195758 - L1MC4a LINE L1 -2140 5668 5508 701 183 9 0 chr13 47549609 47549724 -72195174 + FLAM_A SINE Alu 1 116 -17 189 0 0 0 chr13 47549730 47549751 -72195147 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 238 339 62 8 chr13 47549751 47549881 -72195017 + MIR3 SINE MIR 51 187 -21 25 65 0 0 chr13 47551091 47551137 -72193761 + AT_rich Low_complexity Low_complexity 1 46 0 649 167 0 0 chr13 47551972 47552086 -72192812 - FRAM SINE Alu 0 176 63 2457 79 0 0 chr13 47552406 47552710 -72192188 - AluSc SINE Alu -5 304 1 1688 161 37 3 chr13 47553001 47553299 -72191599 + MER7A DNA MER2_type 1 306 -40 33 73 0 0 chr13 47553837 47553905 -72190993 + AT_rich Low_complexity Low_complexity 1 68 0 2023 122 17 0 chr13 47556895 47557189 -72187709 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr13 47557992 47558014 -72186884 + AT_rich Low_complexity Low_complexity 1 22 0 1968 126 33 3 chr13 47558104 47558405 -72186493 - AluSx SINE Alu -2 310 1 30945 108 20 56 chr13 47558964 47565330 -72179568 + L1PA7 LINE L1 10 6142 -12 1117 216 14 0 chr13 47565410 47565628 -72179270 + AluJb SINE Alu 84 304 -8 1493 197 42 0 chr13 47565670 47565934 -72178964 + AluJb SINE Alu 1 275 -37 186 43 0 0 chr13 47565941 47565964 -72178934 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 680 80 0 0 chr13 47566074 47566174 -72178724 - AluSg/x SINE Alu 0 310 211 863 226 0 11 chr13 47566575 47566752 -72178146 + FAM SINE Alu 1 175 0 2156 131 3 3 chr13 47567582 47567894 -72177004 + AluSx SINE Alu 1 312 0 745 216 45 6 chr13 47568098 47568274 -72176624 - MER105 DNA DNA -20 184 2 603 185 8 8 chr13 47568395 47568514 -72176384 + FLAM_A SINE Alu 14 132 -10 259 306 122 10 chr13 47568519 47568617 -72176281 + MIR3 SINE MIR 87 195 -13 309 302 30 23 chr13 47568662 47568782 -72176116 - MIR SINE MIR -66 142 43 2286 177 8 13 chr13 47569583 47569979 -72174919 - MSTB LTR MaLR 0 426 33 227 269 0 0 chr13 47569980 47570032 -72174866 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570033 47570085 -72174813 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570086 47570138 -72174760 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570139 47570191 -72174707 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570192 47570244 -72174654 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570245 47570297 -72174601 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570298 47570350 -72174548 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570351 47570403 -72174495 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570404 47570456 -72174442 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570457 47570509 -72174389 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570510 47570562 -72174336 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570563 47570615 -72174283 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570616 47570668 -72174230 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570669 47570721 -72174177 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570722 47570774 -72174124 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570775 47570827 -72174071 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570828 47570880 -72174018 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570881 47570933 -72173965 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570934 47570986 -72173912 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570987 47571039 -72173859 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571040 47571092 -72173806 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571093 47571145 -72173753 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571146 47571198 -72173700 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571199 47571251 -72173647 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571252 47571304 -72173594 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571305 47571357 -72173541 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571358 47571410 -72173488 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571411 47571463 -72173435 - MSTB LTR MaLR -342 84 33 474 202 0 0 chr13 47571464 47571548 -72173350 - MSTB LTR MaLR -342 84 1 1372 132 20 0 chr13 47572294 47572491 -72172407 + 7SLRNA srpRNA srpRNA 1 201 -119 27 62 0 0 chr13 47572677 47572725 -72172173 + AT_rich Low_complexity Low_complexity 1 48 0 365 271 34 73 chr13 47572779 47572956 -72171942 + L1M4 LINE L1 4332 4501 -1645 2115 113 3 0 chr13 47573483 47573803 -72171095 + AluSx SINE Alu 1 321 0 521 179 86 34 chr13 47573813 47573930 -72170968 + FRAM SINE Alu 8 130 -46 30 0 0 0 chr13 47573942 47573972 -72170926 + AT_rich Low_complexity Low_complexity 1 30 0 1166 238 104 3 chr13 47574933 47575232 -72169666 - L2 LINE L2 -15 3298 2970 24 0 0 0 chr13 47575796 47575820 -72169078 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 47576326 47576356 -72168542 + AT_rich Low_complexity Low_complexity 1 30 0 842 146 0 0 chr13 47576926 47577049 -72167849 - FLAM_C SINE Alu -10 123 1 21 0 0 0 chr13 47577136 47577157 -72167741 + AT_rich Low_complexity Low_complexity 1 21 0 705 186 0 29 chr13 47577190 47577330 -72167568 + FLAM_C SINE Alu 1 136 -7 396 312 40 7 chr13 47577490 47577667 -72167231 + L1MDb LINE L1 410 656 -5753 3381 192 50 28 chr13 47577737 47578877 -72166021 - L1MD1 LINE L1 -222 6020 4856 847 173 96 5 chr13 47578873 47579081 -72165817 + L1MDb LINE L1 2363 2589 -3998 * 366 358 48 52 chr13 47579113 47579381 -72165517 - L2 LINE L2 -850 2464 2198 2278 102 0 3 chr13 47579381 47579674 -72165224 + AluSx SINE Alu 1 292 -20 1435 257 48 60 chr13 47580430 47580928 -72163970 - MLT1F LTR MaLR -50 492 1 204 273 0 0 chr13 47581033 47581077 -72163821 - L2 LINE L2 -8 3305 3262 393 250 50 0 chr13 47581227 47581327 -72163571 - MIR SINE MIR -30 232 128 239 359 15 103 chr13 47581340 47581602 -72163296 + L2 LINE L2 2925 3163 -109 * 607 277 134 26 chr13 47581601 47581832 -72163066 + MIR SINE MIR 5 260 -2 355 277 53 0 chr13 47581850 47581944 -72162954 - MIR SINE MIR -15 247 149 618 332 137 4 chr13 47582125 47582351 -72162547 + MIR SINE MIR 7 262 0 208 254 0 0 chr13 47582972 47583027 -72161871 + (TA)n Simple_repeat Simple_repeat 1 55 0 205 314 66 58 chr13 47583075 47583212 -72161686 + MER5B DNA MER1_type 24 161 -17 1589 147 0 12 chr13 47584068 47584313 -72160585 - MLT1A1 LTR MaLR -8 357 116 1660 93 0 0 chr13 47585223 47585439 -72159459 - AluY SINE Alu -13 298 83 23 0 0 0 chr13 47585938 47585961 -72158937 + AT_rich Low_complexity Low_complexity 1 23 0 265 265 60 0 chr13 47586498 47586581 -72158317 + MIR SINE MIR 119 206 -56 313 215 62 0 chr13 47586744 47586809 -72158089 + MER96 DNA MER1_type? 107 175 0 3090 136 53 20 chr13 47586924 47587258 -72157640 - MER21A LTR ERV1 -6 925 567 2030 128 10 0 chr13 47587258 47587554 -72157344 + AluSx SINE Alu 3 301 -11 3090 136 53 20 chr13 47587554 47587725 -72157173 - MER21A LTR ERV1 -364 567 403 723 172 98 23 chr13 47587759 47587933 -72156965 - MER21A LTR ERV1 -667 264 78 187 314 111 53 chr13 47588444 47588651 -72156247 + L2 LINE L2 2835 3053 -219 2197 117 3 0 chr13 47588977 47589275 -72155623 - AluSx SINE Alu -13 299 1 1465 296 82 15 chr13 47589363 47590324 -72154574 - L2 LINE L2 0 3313 2294 555 269 166 9 chr13 47590536 47590759 -72154139 - MIR SINE MIR 0 262 5 252 336 123 62 chr13 47591835 47591981 -72152917 - MIR SINE MIR -89 173 19 676 270 135 0 chr13 47592140 47592392 -72152506 - HAL1 LINE L1 -1540 967 682 524 296 6 6 chr13 47592402 47592574 -72152324 - HAL1 LINE L1 -2192 315 144 512 126 0 35 chr13 47592578 47592753 -72152145 + AluJo SINE Alu 85 291 -21 279 223 75 21 chr13 47592768 47592862 -72152036 - HAL1 LINE L1 -2401 106 8 12375 130 41 32 chr13 47592925 47595188 -72149710 - L1M LINE L1 -803 5343 3089 1104 302 50 9 chr13 47595184 47595764 -72149134 - L1M4 LINE L1 -2469 3677 3074 * 2827 103 86 0 chr13 47596610 47597038 -72147860 - MER4C LTR ERV1 0 465 1 540 274 146 24 chr13 47597046 47597258 -72147640 - MIR SINE MIR -23 239 2 944 284 166 41 chr13 47597504 47598371 -72146527 - L2 LINE L2 -40 3273 2264 742 209 15 0 chr13 47599384 47599518 -72145380 + MIR SINE MIR 18 153 -109 7998 169 63 37 chr13 47599546 47601202 -72143696 - MER52A LTR ERV1 -20 1735 37 897 190 27 0 chr13 47601508 47601692 -72143206 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr13 47601996 47602017 -72142881 + AT_rich Low_complexity Low_complexity 1 21 0 457 56 0 14 chr13 47602262 47602334 -72142564 + L1PB1 LINE L1 6069 6139 -12 1192 177 98 0 chr13 47602346 47602561 -72142337 + MER21B LTR ERV1 277 512 -351 2034 100 14 4 chr13 47602904 47603283 -72141615 - AluSx SINE Alu 0 382 1 1809 167 11 3 chr13 47603692 47603979 -72140919 + AluJb SINE Alu 1 289 -23 4968 158 41 23 chr13 47604014 47604832 -72140066 - L1MB7 LINE L1 -9 6175 5373 2319 110 0 0 chr13 47604832 47605142 -72139756 - AluSg SINE Alu 0 310 1 1889 162 0 3 chr13 47605144 47605434 -72139464 - AluJb SINE Alu -21 291 3 4968 158 41 23 chr13 47605434 47606000 -72138898 - L1MB7 LINE L1 -811 5373 4751 494 303 11 28 chr13 47606175 47606353 -72138545 - L1ME3A LINE L1 -9 6161 5987 24 32 0 0 chr13 47607060 47607091 -72137807 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr13 47607841 47607866 -72137032 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr13 47607970 47607994 -72136904 + (T)n Simple_repeat Simple_repeat 1 24 0 42766 31 21 2 chr13 47608567 47614585 -72130313 + L1HS LINE L1 12 6148 -7 195 42 0 0 chr13 47614593 47614617 -72130281 + (A)n Simple_repeat Simple_repeat 1 24 0 188 163 23 0 chr13 47616647 47616690 -72128208 + (TA)n Simple_repeat Simple_repeat 1 44 0 2530 230 85 51 chr13 47616707 47617472 -72127426 - MER21B LTR ERV1 -54 809 19 32 0 0 0 chr13 47617911 47617943 -72126955 + AT_rich Low_complexity Low_complexity 1 32 0 1198 212 13 0 chr13 47617969 47618195 -72126703 - AluJo SINE Alu -83 229 1 1498 231 67 71 chr13 47618235 47618772 -72126126 - MLT1F LTR MaLR -7 535 1 418 206 71 35 chr13 47618929 47619070 -72125828 - Charlie2a DNA MER1_type -1 2861 2716 442 209 70 76 chr13 47619070 47619228 -72125670 - Charlie2a DNA MER1_type -1199 1663 1507 22 0 0 0 chr13 47620235 47620257 -72124641 + AT_rich Low_complexity Low_complexity 1 22 0 1928 159 0 3 chr13 47621969 47622259 -72122639 + AluJo SINE Alu 6 294 -18 259 221 174 0 chr13 47622447 47622533 -72122365 + Charlie7 DNA MER1_type 2 102 -2510 231 253 21 32 chr13 47622556 47622651 -72122247 + Charlie7 DNA MER1_type 2519 2612 0 1232 112 93 0 chr13 47622675 47622890 -72122008 - L1MA4 LINE L1 0 6300 6066 29 28 0 0 chr13 47623471 47623507 -72121391 + AT_rich Low_complexity Low_complexity 1 36 0 408 267 26 0 chr13 47624986 47625102 -72119796 + L2 LINE L2 2173 2291 -1023 527 319 215 5 chr13 47625234 47625627 -72119271 + L2 LINE L2 2588 3070 -243 890 316 95 34 chr13 47625909 47626289 -72118609 - L2 LINE L2 -27 3286 2884 1024 241 63 25 chr13 47626356 47626675 -72118223 + MER46C DNA MER2_type 1 331 -7 24 0 0 0 chr13 47627189 47627213 -72117685 + AT_rich Low_complexity Low_complexity 1 24 0 1185 234 104 3 chr13 47627777 47628076 -72116822 + L2 LINE L2 2970 3298 -15 30 0 0 0 chr13 47629037 47629067 -72115831 + AT_rich Low_complexity Low_complexity 1 30 0 544 171 86 34 chr13 47629079 47629196 -72115702 - FRAM SINE Alu -46 130 8 2070 120 3 0 chr13 47629209 47629527 -72115371 - AluSx SINE Alu 0 319 1 365 271 34 73 chr13 47630054 47630231 -72114667 - L1M4 LINE L1 -1645 4501 4332 27 62 0 0 chr13 47630285 47630333 -72114565 + AT_rich Low_complexity Low_complexity 1 48 0 1397 126 15 0 chr13 47630519 47630717 -72114181 - 7SLRNA srpRNA srpRNA -119 201 1 595 143 0 0 chr13 47631463 47631547 -72113351 + MSTB LTR MaLR 1 84 -342 317 192 0 0 chr13 47631548 47631600 -72113298 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631601 47631653 -72113245 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631654 47631706 -72113192 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631707 47631759 -72113139 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631760 47631812 -72113086 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631813 47631865 -72113033 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631866 47631918 -72112980 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631919 47631971 -72112927 + MSTB LTR MaLR 33 84 -342 323 173 0 0 chr13 47631972 47632024 -72112874 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 47632025 47632077 -72112821 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 47632078 47632130 -72112768 + MSTB LTR MaLR 33 84 -342 286 231 0 0 chr13 47632131 47632183 -72112715 + MSTB LTR MaLR 33 84 -342 2396 169 8 13 chr13 47632234 47632630 -72112268 + MSTB LTR MaLR 33 426 0 296 302 30 23 chr13 47633443 47633563 -72111335 + MIR SINE MIR 43 154 -66 239 306 122 10 chr13 47633608 47633706 -72111192 - MIR3 SINE MIR -13 195 87 632 193 8 8 chr13 47633711 47633830 -72111068 - FLAM_A SINE Alu -10 132 14 771 216 45 6 chr13 47633951 47634127 -72110771 + MER105 DNA DNA 2 184 -20 2174 131 3 3 chr13 47634332 47634644 -72110254 - AluSx SINE Alu 0 312 1 711 184 0 16 chr13 47635472 47635597 -72109301 - FAM SINE Alu -8 41 1 263 299 65 30 chr13 47635816 47636187 -72108711 - L1M4c LINE L1 -3653 2562 2179 385 219 223 53 chr13 47636393 47636707 -72108191 + MLT1H LTR MaLR 39 403 -192 300 244 35 12 chr13 47636814 47636900 -72107998 + MLT1H LTR MaLR 458 545 -4 449 316 24 11 chr13 47637218 47637566 -72107332 - L1M4c LINE L1 -864 1712 1319 4656 223 42 20 chr13 47638077 47639424 -72105474 + L1MD2 LINE L1 2553 3929 -2217 323 222 38 113 chr13 47639434 47639619 -72105279 + L1MD2 LINE L1 4873 5043 -1103 1269 74 0 12 chr13 47639623 47639785 -72105113 + AluSc SINE Alu 1 160 -149 5168 178 76 2 chr13 47639906 47640931 -72103967 + L1MD2 LINE L1 5257 6357 -2 1340 174 81 0 chr13 47641169 47641427 -72103471 + AluJo SINE Alu 14 292 -20 26 0 0 0 chr13 47642143 47642169 -72102729 + AT_rich Low_complexity Low_complexity 1 26 0 2432 89 3 0 chr13 47643387 47643689 -72101209 + AluSx SINE Alu 1 303 -9 390 282 0 27 chr13 47644075 47644186 -72100712 + MIR3 SINE MIR 79 187 -21 21 0 0 0 chr13 47644405 47644426 -72100472 + AT_rich Low_complexity Low_complexity 1 21 0 1070 192 47 0 chr13 47645268 47645461 -72099437 + MER20 DNA MER1_type 18 219 0 208 234 0 0 chr13 47645936 47645983 -72098915 + (TG)n Simple_repeat Simple_repeat 1 47 0 1099 166 90 11 chr13 47646992 47647269 -72097629 + AluSp SINE Alu 5 303 0 875 263 133 16 chr13 47647393 47647701 -72097197 - L1MC4 LINE L1 -923 6961 6542 322 285 49 59 chr13 47648622 47648817 -72096081 + MIR SINE MIR 17 212 -50 236 32 32 0 chr13 47649395 47649426 -72095472 - L2 LINE L2 -19 3294 3263 211 229 83 0 chr13 47649635 47649683 -72095215 + L2 LINE L2 3262 3313 0 390 268 71 42 chr13 47650061 47650119 -72094779 - MIR SINE MIR 0 262 207 2031 205 48 34 chr13 47650119 47650356 -72094542 + MLT1D LTR MaLR 1 233 -272 183 42 0 0 chr13 47650356 47650380 -72094518 + (ATGTG)n Simple_repeat Simple_repeat 5 28 0 2031 205 48 34 chr13 47650380 47650640 -72094258 + MLT1D LTR MaLR 233 505 0 390 268 71 42 chr13 47650640 47650749 -72094149 - MIR SINE MIR -55 207 90 301 235 39 39 chr13 47650819 47650921 -72093977 - MIR SINE MIR -59 149 48 197 294 22 65 chr13 47650970 47651062 -72093836 - MER5A DNA MER1_type -80 109 22 1636 185 7 7 chr13 47651352 47651649 -72093249 + AluJo SINE Alu 16 312 0 22 0 0 0 chr13 47651808 47651830 -72093068 + AT_rich Low_complexity Low_complexity 1 22 0 369 254 69 8 chr13 47652522 47652652 -72092246 + L1ME4a LINE L1 5934 6071 -50 2288 102 0 7 chr13 47652669 47652974 -72091924 - AluSx SINE Alu -9 303 1 22 0 0 0 chr13 47652990 47653012 -72091886 + AT_rich Low_complexity Low_complexity 1 22 0 1698 167 0 7 chr13 47653012 47653288 -72091610 + AluJb SINE Alu 22 295 -17 579 107 12 0 chr13 47653315 47653399 -72091499 - L1PB3 LINE L1 -6 6148 6064 284 202 250 0 chr13 47653864 47653968 -72090930 + MIR SINE MIR 123 252 -10 189 74 0 0 chr13 47654387 47654414 -72090484 + (CA)n Simple_repeat Simple_repeat 1 27 0 2257 217 166 15 chr13 47654663 47655330 -72089568 + MER69 DNA AcHobo 25 792 -1734 757 211 199 23 chr13 47655379 47655640 -72089258 + MER69 DNA AcHobo 105 411 -2115 289 167 0 0 chr13 47655637 47655679 -72089219 + AluSg/x SINE Alu 210 251 -49 * 2285 110 0 0 chr13 47655714 47656014 -72088884 - AluY SINE Alu -9 302 3 315 104 0 0 chr13 47656352 47656400 -72088498 + (ATG)n Simple_repeat Simple_repeat 1 48 0 232 273 26 26 chr13 47656472 47656549 -72088349 - MIR SINE MIR -98 164 88 1687 230 47 12 chr13 47656870 47657278 -72087620 + LTR40c LTR ERVL 44 465 0 354 318 101 61 chr13 47657295 47657493 -72087405 + L2 LINE L2 3067 3272 0 1701 189 34 99 chr13 47658460 47658578 -72086320 - LTR56 LTR ERV1 0 445 321 1948 168 0 0 chr13 47658578 47658876 -72086022 - AluJo SINE Alu -1 311 14 1701 189 34 99 chr13 47658876 47659233 -72085665 - LTR56 LTR ERV1 -124 321 1 187 214 79 67 chr13 47659317 47659406 -72085492 + MIR SINE MIR 3 92 -170 242 283 0 124 chr13 47660203 47660316 -72084582 - L2 LINE L2 -5 3267 3169 1937 64 0 0 chr13 47660404 47660638 -72084260 + L1MA2 LINE L1 6071 6304 0 578 207 36 7 chr13 47660843 47660983 -72083915 - Charlie2a DNA MER1_type 0 2862 2719 538 219 0 41 chr13 47660998 47661121 -72083777 - Charlie2a DNA MER1_type -1234 1628 1511 1326 134 9 209 chr13 47661142 47661567 -72083331 - THE1A LTR MaLR -15 340 1 2161 88 4 0 chr13 47661782 47662056 -72082842 - AluSp SINE Alu -14 299 25 377 229 57 57 chr13 47662056 47662231 -72082667 - Charlie2 DNA MER1_type -2514 268 94 2033 135 3 7 chr13 47662901 47663204 -72081694 - AluSx SINE Alu -10 302 1 192 280 0 40 chr13 47663308 47663358 -72081540 + L2 LINE L2 3241 3288 -25 4464 188 59 17 chr13 47663539 47664367 -72080531 - MER21B LTR ERV1 0 863 1 562 66 0 13 chr13 47664762 47664838 -72080060 + MADE1 DNA Mariner 6 80 0 891 223 6 0 chr13 47665245 47665411 -72079487 - AluJb SINE Alu -14 298 132 2036 148 0 3 chr13 47665412 47665709 -72079189 - AluSx SINE Alu -16 296 1 850 183 80 0 chr13 47666219 47666394 -72078504 + MER53 DNA DNA 1 189 0 1668 181 10 23 chr13 47667565 47667868 -72077030 + AluJb SINE Alu 1 299 -13 1353 119 5 15 chr13 47667868 47668069 -72076829 + AluSq SINE Alu 1 199 -114 216 0 0 0 chr13 47668192 47668216 -72076682 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3604 146 70 66 chr13 47668263 47668987 -72075911 + LTR8A LTR ERV1 1 727 0 3244 170 50 22 chr13 47669429 47669562 -72075336 - LTR26E LTR ERV1 -2 620 492 2184 112 7 0 chr13 47669562 47669857 -72075041 + AluSc SINE Alu 1 297 -12 3244 170 50 22 chr13 47669857 47670324 -72074574 - LTR26E LTR ERV1 -130 492 3 983 194 99 12 chr13 47670537 47670790 -72074108 + MLT1A2 LTR MaLR 100 374 0 944 104 17 7 chr13 47670810 47670959 -72073939 - THE1C LTR MaLR 0 375 237 257 348 26 0 chr13 47671218 47671333 -72073565 - L1MEd LINE L1 -5286 833 716 969 137 160 0 chr13 47671336 47671511 -72073387 - Tigger7 DNA MER2_type -1 2586 2384 * 2703 170 78 0 chr13 47671510 47671974 -72072924 - Tigger7 DNA MER2_type -233 500 1 256 268 114 57 chr13 47672346 47672469 -72072429 - MIR3 SINE MIR -7 201 72 255 31 0 0 chr13 47673578 47673610 -72071288 + (GA)n Simple_repeat Simple_repeat 2 33 0 1834 177 134 17 chr13 47673804 47674222 -72070676 - MLT1C LTR MaLR 0 467 1 1626 218 102 14 chr13 47675275 47675698 -72069200 + MLT1C LTR MaLR 6 465 -2 230 284 0 54 chr13 47675731 47675805 -72069093 - MIR SINE MIR -119 89 20 216 0 0 0 chr13 47675962 47675986 -72068912 + (TA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr13 47676117 47676141 -72068757 + AT_rich Low_complexity Low_complexity 1 24 0 555 236 42 14 chr13 47676485 47676629 -72068269 - MIR SINE MIR -67 195 48 1435 108 50 67 chr13 47677384 47677624 -72067274 + MER46A DNA MER2_type 1 236 0 840 261 104 24 chr13 47678653 47679029 -72065869 + Tigger8 DNA MER2_type 97 502 -164 27 0 0 0 chr13 47680153 47680180 -72064718 + AT_rich Low_complexity Low_complexity 1 27 0 209 333 0 0 chr13 47681109 47681166 -72063732 + GA-rich Low_complexity Low_complexity 3 59 0 408 271 226 6 chr13 47681856 47682033 -72062865 - MIR SINE MIR -26 236 21 339 239 176 40 chr13 47682575 47682862 -72062036 + L1ME4a LINE L1 5010 5341 -805 462 75 0 0 chr13 47682862 47682929 -72061969 + (TA)n Simple_repeat Simple_repeat 2 68 0 339 239 176 40 chr13 47682929 47682942 -72061956 + L1ME4a LINE L1 5341 5351 -795 228 193 101 73 chr13 47683023 47683132 -72061766 + MER112 DNA MER1_type 149 260 0 1638 160 71 11 chr13 47683754 47684036 -72060862 + AluJo SINE Alu 1 299 -13 24 0 0 0 chr13 47684101 47684125 -72060773 + AT_rich Low_complexity Low_complexity 1 24 0 24 24 0 24 chr13 47684186 47684197 -72060701 + AT_rich Low_complexity Low_complexity 1 11 -30 2028 145 0 3 chr13 47684197 47684486 -72060412 + AluSx SINE Alu 1 288 -24 24 24 0 24 chr13 47684486 47684516 -72060382 + AT_rich Low_complexity Low_complexity 11 41 0 305 272 59 101 chr13 47685348 47685517 -72059381 - MER5B DNA MER1_type 0 178 17 184 232 125 0 chr13 47686233 47686289 -72058609 - L3b LINE CR1 -244 1339 1277 268 340 119 5 chr13 47686301 47686486 -72058412 - MIR SINE MIR -10 252 47 518 302 114 20 chr13 47686503 47686854 -72058044 + L1ME4a LINE L1 5736 6119 -2 266 316 105 30 chr13 47687080 47687213 -72057685 - MIR3 SINE MIR -63 145 3 206 225 0 28 chr13 47688133 47688204 -72056694 + G-rich Low_complexity Low_complexity 3 71 0 24 53 0 0 chr13 47688287 47688325 -72056573 + AT_rich Low_complexity Low_complexity 1 38 0 438 171 34 77 chr13 47688476 47688593 -72056305 - L1PB4 LINE L1 -7 6149 6038 362 317 92 32 chr13 47689095 47689344 -72055554 - L2 LINE L2 -24 3248 2985 495 329 30 0 chr13 47689522 47689686 -72055212 - L2 LINE L2 -572 2742 2574 210 313 24 24 chr13 47689978 47690061 -72054837 - MIR SINE MIR -149 113 31 433 237 26 9 chr13 47691601 47691715 -72053183 - MIR SINE MIR 0 262 147 29 28 0 0 chr13 47691729 47691765 -72053133 + AT_rich Low_complexity Low_complexity 1 36 0 837 145 0 15 chr13 47691765 47691896 -72053002 - FLAM_C SINE Alu -4 129 1 325 284 71 16 chr13 47691901 47692028 -72052870 - MIR SINE MIR -58 150 17 392 231 19 28 chr13 47692197 47692305 -72052593 - MIR SINE MIR -90 172 66 14045 202 28 19 chr13 47692371 47698349 -72046549 - L1MA5A LINE L1 -10 6929 890 21 0 0 0 chr13 47699233 47699254 -72045644 + AT_rich Low_complexity Low_complexity 1 21 0 5240 64 0 3 chr13 47699258 47699933 -72044965 - L1PA7 LINE L1 -6 6148 5476 28747 114 8 64 chr13 47699939 47703251 -72041647 - L1PA7 LINE L1 -17 6137 3375 2320 117 3 0 chr13 47703251 47703560 -72041338 - AluY SINE Alu -1 310 1 28747 114 8 64 chr13 47703560 47706747 -72038151 - L1PA7 LINE L1 -2779 3375 12 285 198 231 58 chr13 47706747 47706868 -72038030 - MIR3 SINE MIR -50 158 17 246 264 41 91 chr13 47707405 47707526 -72037372 + MIR SINE MIR 93 207 -55 193 283 163 43 chr13 47708098 47708190 -72036708 - MIR SINE MIR -85 123 21 1090 119 0 19 chr13 47708513 47708673 -72036225 - AluSx SINE Alu -12 300 144 1047 85 8 0 chr13 47708815 47708944 -72035954 - AluSx SINE Alu -174 139 10 468 350 159 15 chr13 47708975 47709849 -72035049 + L2 LINE L2 1978 2977 -337 446 237 37 104 chr13 47710083 47710336 -72034562 + MIR SINE MIR 9 240 -22 330 132 0 0 chr13 47711413 47711466 -72033432 + (T)n Simple_repeat Simple_repeat 1 53 0 5633 113 15 19 chr13 47713369 47714460 -72030438 - L1PA13 LINE L1 -3 6160 5080 1594 160 8 37 chr13 47714593 47714861 -72030037 - AluJo SINE Alu -31 281 22 238 224 106 47 chr13 47715223 47715308 -72029590 - MIR SINE MIR -20 242 153 1784 169 39 74 chr13 47715316 47715679 -72029219 + MLT1C LTR MaLR 1 344 -123 2595 117 38 17 chr13 47715679 47716097 -72028801 - MSTA LTR MaLR 0 428 2 1784 169 39 74 chr13 47716097 47716217 -72028681 + MLT1C LTR MaLR 344 467 0 300 229 76 19 chr13 47716559 47716664 -72028234 + MER103 DNA DNA 54 164 -2 519 236 94 42 chr13 47716944 47717135 -72027763 - MER90 LTR ERV1 -1 613 413 284 326 56 22 chr13 47717291 47717469 -72027429 - MER89-int LTR ERV1 -408 6393 6210 2499 183 40 4 chr13 47717514 47717985 -72026913 + MLT2B3 LTR ERVL 21 508 -46 238 50 50 0 chr13 47717986 47718026 -72026872 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 382 68 99 19 chr13 47718064 47718226 -72026672 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 334 103 17 0 chr13 47718227 47718285 -72026613 + MLT2B3 LTR ERVL 462 520 0 609 183 0 0 chr13 47718782 47718875 -72026023 - AluJb SINE Alu -58 254 162 13343 92 5 2 chr13 47718922 47721597 -72023301 - L1PA7 LINE L1 -1 6153 3463 592 350 29 51 chr13 47721806 47722332 -72022566 - MER89-int LTR ERV1 -3152 3649 3136 25 65 0 0 chr13 47722480 47722526 -72022372 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr13 47722566 47722592 -72022306 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr13 47723751 47723794 -72021104 + AT_rich Low_complexity Low_complexity 1 43 0 238 293 0 0 chr13 47724181 47724239 -72020659 + GA-rich Low_complexity Low_complexity 3 60 0 379 163 25 25 chr13 47725310 47725390 -72019508 - MER90 LTR ERV1 0 614 535 427 186 115 0 chr13 47725607 47725720 -72019178 - L1MD1 LINE L1 -19 6617 6492 1127 167 11 5 chr13 47725722 47725908 -72018990 - AluJb SINE Alu -4 308 122 689 137 18 30 chr13 47725908 47726076 -72018822 + CT-rich Low_complexity Low_complexity 4 169 0 253 132 0 0 chr13 47726094 47726132 -72018766 - FLAM SINE Alu -24 109 72 3872 179 56 20 chr13 47726132 47727178 -72017720 - L1MD1 LINE L1 -135 6501 5409 35012 71 18 5 chr13 47727192 47732174 -72012724 + L1PA5 LINE L1 11 5028 -1118 7237 44 3 0 chr13 47732177 47733067 -72011831 + L1PA5 LINE L1 5254 6146 -8 3620 218 71 83 chr13 47733080 47734896 -72010002 - L1MD1 LINE L1 -1121 5419 3582 889 180 25 0 chr13 47734896 47735057 -72009841 + AluJb SINE Alu 1 165 -147 3620 218 71 83 chr13 47735057 47736250 -72008648 - L1MD1 LINE L1 -2958 3582 2376 266 87 22 0 chr13 47736250 47736296 -72008602 + (TA)n Simple_repeat Simple_repeat 2 48 0 3620 218 71 83 chr13 47736296 47736615 -72008283 - L1MD1 LINE L1 -4164 2376 1990 2032 125 3 3 chr13 47736615 47736949 -72007949 - AluSq SINE Alu 0 313 1 3620 218 71 83 chr13 47736949 47737146 -72007752 - L1MD1 LINE L1 -4550 1990 1792 495 268 122 18 chr13 47739602 47739766 -72005132 - MIR SINE MIR -9 253 73 665 300 33 49 chr13 47739945 47740335 -72004563 + HAL1 LINE L1 501 884 -1623 1700 245 97 9 chr13 47740386 47740793 -72004105 + HAL1 LINE L1 1710 2200 -307 3725 168 23 34 chr13 47740793 47741533 -72003365 + MER44D DNA MER2_type 2 605 0 1700 245 97 9 chr13 47741533 47741795 -72003103 + HAL1 LINE L1 2200 2438 -69 30 27 0 0 chr13 47741839 47741876 -72003022 + AT_rich Low_complexity Low_complexity 1 37 0 417 242 2 7 chr13 47742089 47742226 -72002672 - MLT1L LTR MaLR 0 615 454 1117 156 123 0 chr13 47743947 47744159 -72000739 - LTR64 LTR ERVK -90 468 231 2313 123 0 0 chr13 47744170 47744479 -72000419 - AluSq SINE Alu -4 309 1 2128 127 31 20 chr13 47744479 47744833 -72000065 - THE1B LTR MaLR -6 358 1 1542 127 0 0 chr13 47744833 47745069 -71999829 - LTR64 LTR ERVK -322 236 1 1385 182 92 26 chr13 47745582 47746180 -71998718 - LOR1-int LTR ERV1 -1682 4916 2471 714 192 10 54 chr13 47746258 47746461 -71998437 - LOR1-int LTR ERV1 -2869 3729 3536 3225 162 30 54 chr13 47746545 47747666 -71997232 - LOR1-int LTR ERV1 -4279 2479 1220 4022 152 14 1 chr13 47747675 47748385 -71996513 - L1PB4 LINE L1 -7 6149 5431 625 229 0 0 chr13 47748429 47748560 -71996338 - FLAM_C SINE Alu -6 137 7 2931 180 51 16 chr13 47748564 47749325 -71995573 - L1PB4 LINE L1 -743 5403 4654 3914 159 54 31 chr13 47749328 47750258 -71994640 - LTR57-int LTR ERVL -4073 1270 320 496 301 51 47 chr13 47750532 47750788 -71994110 - LOR1-int LTR ERV1 -6135 623 367 3087 125 60 4 chr13 47751195 47751708 -71993190 - LTR64 LTR ERVK -16 542 1 345 306 65 2 chr13 47751942 47752251 -71992647 - L1ME LINE L1 -390 5772 5428 459 296 167 14 chr13 47752498 47752714 -71992184 - MIR SINE MIR 0 262 14 311 299 98 37 chr13 47752773 47752987 -71991911 - L1MDa LINE L1 -4766 1774 1548 384 313 83 17 chr13 47753116 47753356 -71991542 - L1MDa LINE L1 -5353 1177 922 835 273 82 40 chr13 47753546 47754096 -71990802 + MLT1G3 LTR MaLR 1 555 -12 778 267 32 16 chr13 47754506 47754753 -71990145 + L2 LINE L2 1822 2072 -1242 423 0 0 0 chr13 47754782 47754829 -71990069 + (TG)n Simple_repeat Simple_repeat 2 48 0 230 328 114 81 chr13 47755294 47755687 -71989211 - L2 LINE L2 0 3272 2867 2749 111 14 5 chr13 47756172 47756596 -71988302 + L1PB1 LINE L1 5723 6150 -1 2152 169 74 89 chr13 47756718 47757246 -71987652 + MLT2B1 LTR ERVL 1 520 0 347 302 47 7 chr13 47757467 47757623 -71987275 + MIR SINE MIR 31 195 -67 1424 180 48 57 chr13 47758926 47759298 -71985600 - MLT1B LTR MaLR -16 374 6 1396 287 29 22 chr13 47759701 47760004 -71984894 + L2 LINE L2 2860 3168 -145 2056 153 16 19 chr13 47760004 47760370 -71984528 - MER47A DNA MER2_type 0 366 2 1396 287 29 22 chr13 47760370 47760516 -71984382 + L2 LINE L2 3168 3312 -1 442 251 36 72 chr13 47761238 47761393 -71983505 + MIR SINE MIR 19 169 -63 452 145 24 0 chr13 47762219 47762302 -71982596 + Charlie1 DNA MER1_type 2661 2745 -16 325 194 15 0 chr13 47762315 47762382 -71982516 + Charlie1 DNA MER1_type 2694 2761 0 365 239 202 0 chr13 47763148 47763257 -71981641 + MIR SINE MIR 47 177 -85 190 400 42 0 chr13 47763430 47763525 -71981373 - L2 LINE L2 -23 3249 3151 1142 141 137 0 chr13 47763584 47763825 -71981073 - L1MC1 LINE L1 0 6333 6060 2070 176 37 60 chr13 47764089 47764601 -71980297 + MLT1D LTR MaLR 6 505 0 490 321 66 10 chr13 47765038 47765234 -71979664 - MIR SINE MIR 0 262 56 295 270 103 32 chr13 47765286 47765412 -71979486 + MIR SINE MIR 20 154 -108 706 339 13 0 chr13 47765429 47765665 -71979233 + MIR SINE MIR 7 245 -17 206 204 0 23 chr13 47767382 47767426 -71977472 - MIR SINE MIR -50 212 170 5310 84 20 8 chr13 47767541 47768280 -71976618 + L1PA11 LINE L1 5420 6167 -7 529 315 62 28 chr13 47768358 47768611 -71976287 - MIR SINE MIR 0 262 3 319 310 49 15 chr13 47768890 47769033 -71975865 + MIR SINE MIR 16 163 -45 298 333 77 39 chr13 47769427 47769634 -71975264 + MIR SINE MIR 42 256 -6 354 383 62 29 chr13 47770649 47771152 -71973746 - L2 LINE L2 -212 3060 2542 4798 199 42 13 chr13 47772547 47774011 -71970887 - L1MD2 LINE L1 -10 6349 4848 3920 169 60 40 chr13 47774019 47774058 -71970840 + L1MB3 LINE L1 5173 5210 -973 2047 158 92 5 chr13 47774058 47774450 -71970448 + MSTB LTR MaLR 1 426 0 3920 169 60 40 chr13 47774450 47774993 -71969905 + L1MB3 LINE L1 5210 5781 -402 1621 171 25 109 chr13 47774993 47775425 -71969473 + MSTD LTR MaLR 1 396 0 3920 169 60 40 chr13 47775425 47775835 -71969063 + L1MB3 LINE L1 5781 6181 -2 1579 221 16 14 chr13 47775830 47776259 -71968639 - L1MD2 LINE L1 -1286 4860 4431 * 572 330 11 5 chr13 47777933 47778118 -71966780 - MIR SINE MIR -21 241 56 2144 110 3 0 chr13 47778129 47778420 -71966478 - AluSg SINE Alu -12 298 7 305 255 59 20 chr13 47779835 47779937 -71964961 + L2 LINE L2 3164 3269 -44 325 262 76 131 chr13 47780006 47780243 -71964655 + MIR SINE MIR 8 231 -31 848 284 45 0 chr13 47781158 47781380 -71963518 - MIR SINE MIR 0 262 31 362 321 67 36 chr13 47781815 47782127 -71962771 + L2 LINE L2 2956 3272 0 1516 157 82 37 chr13 47782320 47782614 -71962284 + AluJo SINE Alu 1 307 -5 456 65 16 0 chr13 47782745 47782807 -71962091 + MADE1 DNA Mariner 18 80 0 254 261 33 22 chr13 47783203 47783295 -71961603 - L1MC4 LINE L1 -16 8026 7934 2394 87 3 0 chr13 47783428 47783728 -71961170 - AluSx SINE Alu -11 301 1 353 323 125 22 chr13 47783957 47784189 -71960709 - L1MC/D LINE L1 -2055 5577 5322 1110 193 97 75 chr13 47784206 47784661 -71960237 - L1MC4 LINE L1 -16 8026 7562 621 274 163 16 chr13 47784664 47785239 -71959659 - L1MC/D LINE L1 -660 5330 4674 398 288 12 62 chr13 47785270 47785410 -71959488 - L1ME LINE L1 -519 5643 5498 2718 98 31 17 chr13 47785410 47785769 -71959129 + THE1B LTR MaLR 1 364 0 13022 82 9 1 chr13 47785769 47787336 -71957562 + THE1B-int LTR MaLR 1 1580 0 2571 122 28 17 chr13 47787336 47787696 -71957202 + THE1B LTR MaLR 1 364 0 398 288 12 62 chr13 47787696 47787713 -71957185 - L1ME LINE L1 -661 5501 5492 185 299 138 0 chr13 47787976 47788063 -71956835 + MIR SINE MIR 164 262 0 376 385 115 7 chr13 47788066 47788362 -71956536 + L2 LINE L2 2403 2730 -584 541 264 115 0 chr13 47788582 47788764 -71956134 + MIR SINE MIR 8 210 -52 278 286 66 33 chr13 47788915 47789006 -71955892 + MLT1K LTR MaLR 104 197 -391 1218 249 72 34 chr13 47789413 47789858 -71955040 + MLT1C LTR MaLR 6 467 0 545 258 8 0 chr13 47790088 47790216 -71954682 - MER94 DNA DNA -1 133 5 2509 124 113 10 chr13 47790283 47790671 -71954227 - MSTA LTR MaLR 0 428 1 679 228 84 18 chr13 47791158 47791325 -71953573 + MER5B DNA MER1_type 1 178 0 2548 103 48 50 chr13 47791427 47791826 -71953072 + MER48 LTR ERV1 1 398 0 350 314 176 41 chr13 47792915 47793233 -71951665 + L2 LINE L2 2904 3264 -8 246 296 0 28 chr13 47793411 47793482 -71951416 - MIR3 SINE MIR -125 83 15 501 303 68 0 chr13 47793971 47794133 -71950765 - MIR SINE MIR -21 241 69 433 304 144 29 chr13 47794197 47794440 -71950458 + L1MC/D LINE L1 5536 5806 -2002 335 307 11 0 chr13 47794765 47794853 -71950045 - LTR67 LTR ERVL -377 180 92 4965 216 39 79 chr13 47795182 47795549 -71949349 - L1MC/D LINE L1 -1746 4224 3844 697 101 0 0 chr13 47795549 47795638 -71949260 + 5S rRNA rRNA 1 89 -32 4965 216 39 79 chr13 47795638 47796889 -71948009 - L1MC/D LINE L1 -2126 3844 2587 3389 252 76 41 chr13 47796878 47797362 -71947536 - L1M1 LINE L1 -3627 2343 1877 * 4870 82 8 2 chr13 47797362 47797958 -71946940 - MER4A LTR ERV1 0 600 1 3389 252 76 41 chr13 47797958 47798240 -71946658 - L1M1 LINE L1 -4093 1877 1606 2820 138 7 9 chr13 47798240 47798675 -71946223 - MER57B LTR ERV1 0 434 1 3389 252 76 41 chr13 47798675 47799344 -71945554 - L1M1 LINE L1 -4364 1606 845 180 0 0 0 chr13 47799344 47799364 -71945534 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3389 252 76 41 chr13 47799364 47799842 -71945056 - L1M1 LINE L1 -5125 845 385 571 288 77 55 chr13 47800087 47800413 -71944485 - L1M1 LINE L1 -5558 333 1 2324 175 89 69 chr13 47801136 47801644 -71943254 + MLT2B1 LTR ERVL 3 520 0 459 0 0 0 chr13 47803232 47803283 -71941615 + (TG)n Simple_repeat Simple_repeat 2 52 0 266 279 15 0 chr13 47803283 47803351 -71941547 + L2 LINE L2 3193 3261 -11 250 229 186 42 chr13 47803526 47803644 -71941254 + MIR SINE MIR 120 254 -8 202 276 86 95 chr13 47803897 47804002 -71940896 + L2 LINE L2 3169 3272 0 329 285 65 83 chr13 47804108 47804440 -71940458 + L2 LINE L2 2716 3063 -209 800 265 78 37 chr13 47804440 47804680 -71940218 - L2 LINE L2 0 3313 3055 1393 263 87 11 chr13 47804680 47805060 -71939838 - MLT1I LTR MaLR 0 409 1 800 265 78 37 chr13 47805060 47805140 -71939758 - L2 LINE L2 -258 3055 2980 1481 232 44 25 chr13 47805144 47805618 -71939280 + L2 LINE L2 2413 2895 -419 263 325 39 13 chr13 47805627 47805704 -71939194 - L2 LINE L2 -1 3312 3234 303 93 0 0 chr13 47805860 47805903 -71938995 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr13 47805902 47805922 -71938976 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 * 258 32 0 0 chr13 47807151 47807182 -71937716 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 208 303 148 21 chr13 47808178 47808320 -71936578 + MIR SINE MIR 47 206 -56 511 304 51 33 chr13 47808661 47808875 -71936023 - LTR67 LTR ERVL -3 554 337 23 0 0 0 chr13 47809157 47809180 -71935718 + AT_rich Low_complexity Low_complexity 1 23 0 4789 154 11 62 chr13 47809203 47810187 -71934711 - L1MA7 LINE L1 -4 6287 5354 1665 309 68 22 chr13 47810412 47811182 -71933716 - ERVL LTR ERVL -501 5263 4459 5731 215 49 33 chr13 47811232 47812647 -71932251 - L1PBa LINE L1 -3916 2947 2390 1812 146 71 0 chr13 47812647 47812914 -71931984 + AluSx SINE Alu 13 298 -14 5731 215 49 33 chr13 47812914 47814963 -71929935 - L1PBa LINE L1 -4473 2390 376 269 255 49 49 chr13 47814963 47815065 -71929833 - ERVL LTR ERVL -1583 4181 4080 287 238 95 12 chr13 47815111 47815195 -71929703 - ERVL LTR ERVL -2346 3418 3328 1158 318 75 28 chr13 47815345 47816020 -71928878 - ERVL LTR ERVL -1912 3084 2413 2355 139 24 9 chr13 47816044 47816383 -71928515 + MER2 DNA MER2_type 1 344 0 742 200 74 7 chr13 47816435 47816601 -71928297 + MLT1B LTR MaLR 1 176 -198 450 0 0 0 chr13 47816601 47816651 -71928247 + (TC)n Simple_repeat Simple_repeat 1 50 0 742 200 74 7 chr13 47816651 47816662 -71928236 + MLT1B LTR MaLR 176 185 -189 343 336 0 0 chr13 47817155 47817274 -71927624 - ERVL LTR ERVL -5134 630 512 206 188 16 31 chr13 47817304 47817368 -71927530 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 393 213 0 0 chr13 47817488 47817563 -71927335 - LTR67 LTR ERVL -2 555 481 1012 59 0 0 chr13 47817575 47817694 -71927204 + AluY SINE Alu 1 119 -192 865 260 100 82 chr13 47817707 47818196 -71926702 - LTR67 LTR ERVL -58 499 2 2408 35 6 35 chr13 47818246 47818559 -71926339 + AluY SINE Alu 1 304 -7 205 190 52 35 chr13 47818727 47818785 -71926113 - MER91 DNA MER1_type 0 140 82 203 366 9 9 chr13 47818812 47818924 -71925974 + MIR SINE MIR 12 123 -139 1084 223 48 0 chr13 47819097 47819303 -71925595 + MER20 DNA MER1_type 4 219 0 1047 208 14 27 chr13 47819582 47819803 -71925095 + MER20 DNA MER1_type 1 218 -1 193 230 81 68 chr13 47820237 47820311 -71924587 - L2 LINE L2 -10 3262 3188 1160 161 12 33 chr13 47820603 47820633 -71924265 - MSTB LTR MaLR -1 425 396 1435 150 26 9 chr13 47820633 47820859 -71924039 + MER30 DNA MER1_type 1 230 0 1160 161 12 33 chr13 47820859 47821161 -71923737 - MSTB LTR MaLR -30 396 1 223 172 52 35 chr13 47821358 47821416 -71923482 + MER91 DNA MER1_type 1 59 -81 392 324 7 7 chr13 47821443 47821579 -71923319 + MIR SINE MIR 12 147 -115 394 274 119 32 chr13 47823199 47823444 -71921454 + MIR SINE MIR 1 262 0 2069 110 4 7 chr13 47823454 47823762 -71921136 - AluSx SINE Alu 0 310 4 1392 132 19 0 chr13 47823763 47823968 -71920930 + Tigger1 DNA MER2_type 364 572 -1846 721 203 0 0 chr13 47823968 47824086 -71920812 - FLAM_C SINE Alu -15 118 1 651 313 110 26 chr13 47824169 47824479 -71920419 - L2 LINE L2 0 3272 2937 2283 118 0 0 chr13 47824747 47825053 -71919845 + AluSx SINE Alu 1 306 -6 618 247 96 60 chr13 47825579 47825830 -71919068 - MIR SINE MIR -1 261 2 324 298 85 0 chr13 47825922 47826063 -71918835 + L1ME LINE L1 5672 5824 -297 1254 296 69 21 chr13 47826068 47826534 -71918364 + HAL1 LINE L1 1 488 -2019 1982 268 137 0 chr13 47826588 47827244 -71917654 + L2 LINE L2 1956 2701 -613 509 292 120 0 chr13 47827239 47827448 -71917450 + L2 LINE L2 2837 3070 -243 * 1895 129 37 0 chr13 47827456 47827754 -71917144 - AluSq SINE Alu 0 308 1 257 280 0 0 chr13 47827829 47827879 -71917019 + MIR SINE MIR 204 253 -9 441 287 32 6 chr13 47827950 47828107 -71916791 + HAL1 LINE L1 605 765 -1742 507 184 11 0 chr13 47828123 47828210 -71916688 + MER81 DNA DNA 26 113 -1 3369 255 164 33 chr13 47828211 47829743 -71915155 + HAL1 LINE L1 761 2494 -13 2732 26 0 6 chr13 47829743 47830071 -71914827 - AluYa5 SINE Alu 0 326 1 484 236 179 61 chr13 47830088 47830187 -71914711 - L1ME3A LINE L1 -5 6165 6079 2196 122 0 0 chr13 47830187 47830481 -71914417 - AluSx SINE Alu -18 294 1 484 236 179 61 chr13 47830481 47830610 -71914288 - L1ME3A LINE L1 -91 6079 5910 205 222 25 12 chr13 47830614 47830681 -71914217 + (TAA)n Simple_repeat Simple_repeat 2 72 -11 361 121 60 96 chr13 47830681 47830764 -71914134 - MADE1 DNA Mariner 0 80 1 205 222 25 12 chr13 47830764 47830777 -71914121 + (TAA)n Simple_repeat Simple_repeat 72 83 0 501 262 87 4 chr13 47830790 47830981 -71913917 - L1ME3A LINE L1 -272 5898 5727 530 323 113 50 chr13 47831117 47831516 -71913382 - L2 LINE L2 0 3272 2849 255 296 68 0 chr13 47831573 47831661 -71913237 - L2 LINE L2 -1407 1907 1814 270 0 0 0 chr13 47832062 47832092 -71912806 + (CA)n Simple_repeat Simple_repeat 2 31 0 30 0 0 0 chr13 47832976 47833006 -71911892 + AT_rich Low_complexity Low_complexity 1 30 0 204 308 158 17 chr13 47833127 47833247 -71911651 - L2 LINE L2 -2 3311 3175 236 30 30 0 chr13 47833975 47834008 -71910890 + (TC)n Simple_repeat Simple_repeat 2 35 0 250 343 41 68 chr13 47834345 47834491 -71910407 - L2 LINE L2 -5 3267 3126 183 268 116 71 chr13 47834731 47834929 -71909969 + L2 LINE L2 2375 2581 -733 * 467 220 5 151 chr13 47834905 47835123 -71909775 + L2 LINE L2 3095 3280 -33 237 132 0 0 chr13 47835138 47835176 -71909722 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 374 294 73 45 chr13 47836229 47836406 -71908492 + MIR SINE MIR 25 206 -56 344 302 9 17 chr13 47836695 47836811 -71908087 - L2 LINE L2 -2 3270 3156 1008 275 69 125 chr13 47837053 47837678 -71907220 + L2 LINE L2 1755 2319 -995 1852 156 9 41 chr13 47837678 47837998 -71906900 - AluJb SINE Alu -2 310 1 1008 275 69 125 chr13 47837998 47838246 -71906652 + L2 LINE L2 2319 2579 -735 843 244 79 125 chr13 47838221 47838559 -71906339 + L2 LINE L2 2816 3123 -190 * 2258 97 3 0 chr13 47838559 47838847 -71906051 + AluSx SINE Alu 1 289 -23 843 244 79 125 chr13 47838847 47839029 -71905869 + L2 LINE L2 3123 3312 -1 382 299 25 6 chr13 47839545 47839702 -71905196 - MER117 DNA MER1_type -37 160 1 383 234 175 0 chr13 47840075 47840212 -71904686 + MIR SINE MIR 92 252 -10 203 383 33 17 chr13 47841671 47841791 -71903107 - L3b LINE CR1 -121 1462 1341 1439 196 11 48 chr13 47841980 47842337 -71902561 - L1MD3 LINE L1 -296 7699 7356 1962 168 11 14 chr13 47842479 47842842 -71902056 - MLT1A1 LTR MaLR 0 365 4 39 60 0 0 chr13 47842863 47842930 -71901968 + AT_rich Low_complexity Low_complexity 1 67 0 6124 120 22 1 chr13 47842937 47844028 -71900870 - L1MA4 LINE L1 -27 6273 5157 232 254 0 70 chr13 47844493 47844564 -71900334 + L3 LINE CR1 1508 1573 -4 2220 99 30 0 chr13 47844675 47845052 -71899846 + AluSx SINE Alu 1 386 0 808 216 0 82 chr13 47845129 47845361 -71899537 - MER58C DNA MER1_type -1 214 2 316 253 101 0 chr13 47845365 47845464 -71899434 - MER103 DNA DNA -57 109 1 450 279 180 41 chr13 47845549 47845861 -71899037 + L1ME4a LINE L1 4942 5302 -844 464 319 66 43 chr13 47845869 47846433 -71898465 + L1ME4a LINE L1 5311 5887 -234 1983 144 7 0 chr13 47846441 47846746 -71898152 + AluSp SINE Alu 1 307 -6 950 108 0 0 chr13 47846885 47847005 -71897893 - AluSq/x SINE Alu -193 120 1 254 263 90 32 chr13 47849286 47849442 -71895456 - LTR67 LTR ERVL -36 521 357 550 289 183 34 chr13 47851214 47851629 -71893269 - L2 LINE L2 0 3313 2837 307 275 42 48 chr13 47852182 47852349 -71892549 - L2 LINE L2 -560 2754 2589 1858 154 34 3 chr13 47852817 47853110 -71891788 + AluJb SINE Alu 1 302 -10 212 29 0 59 chr13 47853171 47853205 -71891693 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 715 175 26 0 chr13 47853216 47853330 -71891568 - FLAM_C SINE Alu -26 117 1 2139 114 7 3 chr13 47854072 47854362 -71890536 - AluSc SINE Alu -18 291 1 260 216 108 14 chr13 47854749 47854823 -71890075 + MER57A LTR ERV1 1 81 -353 960 220 103 28 chr13 47855151 47855460 -71889438 + MER57A LTR ERV1 99 403 0 22 35 0 0 chr13 47855485 47855514 -71889384 + AT_rich Low_complexity Low_complexity 1 29 0 635 340 98 18 chr13 47855564 47855964 -71888934 + L3 LINE CR1 678 1109 -468 2047 145 132 8 chr13 47855978 47856358 -71888540 - MSTA LTR MaLR -1 427 1 8553 144 41 42 chr13 47856358 47857937 -71886961 - MSTA-int LTR MaLR 0 1580 3 1858 143 137 8 chr13 47857942 47858314 -71886584 - MSTA LTR MaLR -3 425 6 368 284 72 49 chr13 47858316 47858705 -71886193 - MLT1J LTR MaLR -4 461 106 338 282 212 46 chr13 47858904 47859163 -71885735 + L3 LINE CR1 1276 1577 0 311 289 151 19 chr13 47859234 47859393 -71885505 - MIR SINE MIR -77 185 6 275 327 87 7 chr13 47860520 47860670 -71884228 + MIR3 SINE MIR 30 191 -17 277 180 155 0 chr13 47860739 47860815 -71884083 - MIR SINE MIR -62 146 82 386 236 129 21 chr13 47860886 47861026 -71883872 - HAL1 LINE L1 -40 2467 2313 722 193 71 21 chr13 47861042 47861280 -71883618 - HAL1 LINE L1 -279 2228 1979 14540 122 27 21 chr13 47861326 47861694 -71883204 + Tigger1 DNA MER2_type 14 378 -2040 2177 116 0 13 chr13 47861694 47861997 -71882901 - AluSx SINE Alu -10 302 4 14540 122 27 21 chr13 47861997 47863459 -71881439 + Tigger1 DNA MER2_type 378 1865 -553 2324 92 13 0 chr13 47863459 47863762 -71881136 + AluY SINE Alu 2 308 -3 14540 122 27 21 chr13 47863762 47864320 -71880578 + Tigger1 DNA MER2_type 1865 2418 0 1534 259 18 11 chr13 47864320 47864764 -71880134 - HAL1 LINE L1 -555 1952 1506 1410 236 40 60 chr13 47865647 47866107 -71878791 - L1ME3A LINE L1 -270 5900 5451 1928 113 53 25 chr13 47866107 47866255 -71878643 - AluSc SINE Alu -18 291 149 2239 98 40 0 chr13 47866255 47866551 -71878347 - AluSq SINE Alu -5 308 1 1928 113 53 25 chr13 47866551 47866685 -71878213 - AluSc SINE Alu -160 149 1 1410 236 40 60 chr13 47866685 47866754 -71878144 - L1ME3A LINE L1 -719 5451 5382 2367 256 61 24 chr13 47866755 47867005 -71877893 - L1ME3A LINE L1 -1329 4817 4578 2069 134 0 7 chr13 47867005 47867311 -71877587 - AluSq SINE Alu -8 305 2 2367 256 61 24 chr13 47867311 47868183 -71876715 - L1ME3A LINE L1 -1568 4578 3653 610 267 112 14 chr13 47868984 47869211 -71875687 - MIR SINE MIR -12 250 5 281 311 73 0 chr13 47869655 47869806 -71875092 + MER103 DNA DNA 4 165 -1 460 319 44 6 chr13 47869941 47870123 -71874775 + L3 LINE CR1 1388 1576 -1 3276 198 48 42 chr13 47870190 47870967 -71873931 + MER21B LTR ERV1 12 792 -71 520 252 156 66 chr13 47871053 47871522 -71873376 - MLT1J LTR MaLR 0 511 1 415 277 60 42 chr13 47872405 47872571 -71872327 + MER5B DNA MER1_type 7 175 -3 404 346 107 4 chr13 47873096 47873330 -71871568 - L3b LINE CR1 -197 1386 1129 446 313 34 56 chr13 47873515 47873694 -71871204 + MIR3 SINE MIR 19 193 -15 659 276 56 28 chr13 47875267 47875481 -71869417 + MIR SINE MIR 17 236 -26 24 0 0 0 chr13 47876814 47876838 -71868060 + AT_rich Low_complexity Low_complexity 1 24 0 403 210 95 123 chr13 47877216 47877459 -71867439 - MER112 DNA MER1_type 0 260 25 1931 123 76 25 chr13 47877529 47877886 -71867012 + THE1C LTR MaLR 1 375 0 320 114 0 0 chr13 47878016 47878071 -71866827 - MLT2D LTR ERVL -2 462 415 480 215 0 0 chr13 47878071 47878178 -71866720 + (TA)n Simple_repeat Simple_repeat 1 107 0 317 87 0 0 chr13 47878256 47878302 -71866596 + MLT2C2 LTR ERVL 417 462 -2 895 173 115 21 chr13 47878374 47878617 -71866281 - MLT2D LTR ERVL -46 368 103 488 140 65 9 chr13 47878709 47878816 -71866082 - MLT2B1 LTR ERVL -407 113 1 452 264 61 7 chr13 47878919 47879067 -71865831 - MER63A DNA MER1_type 0 210 55 980 47 0 16 chr13 47879248 47879377 -71865521 - L1PB3 LINE L1 0 6154 6028 2349 112 0 0 chr13 47879557 47879861 -71865037 + AluSx SINE Alu 1 304 -8 378 130 26 13 chr13 47879868 47879945 -71864953 + L1MC5 LINE L1 7393 7470 -491 503 250 90 7 chr13 47879995 47880139 -71864759 - MER5A DNA MER1_type 0 189 34 2484 121 54 5 chr13 47880191 47880597 -71864301 + MSTA LTR MaLR 3 428 0 480 248 35 25 chr13 47880598 47880796 -71864102 + L1MC5 LINE L1 7711 7910 -51 1992 116 22 0 chr13 47881268 47881571 -71863327 + AluSq SINE Alu 1 309 0 4901 117 30 4 chr13 47881628 47882387 -71862511 + MER4E LTR ERV1 1 779 0 272 328 15 22 chr13 47882531 47882665 -71862233 - MIR3 SINE MIR -9 199 67 395 236 77 93 chr13 47882982 47883116 -71861782 - MIR SINE MIR 0 262 130 2400 88 3 0 chr13 47883116 47883422 -71861476 + AluSp SINE Alu 1 307 -6 395 236 77 93 chr13 47883422 47883469 -71861429 - MIR SINE MIR -132 130 84 330 289 95 74 chr13 47883521 47883603 -71861295 + MER91A DNA MER1_type 1 194 -2 336 306 148 0 chr13 47883603 47883711 -71861187 + MER91A DNA MER1_type 71 194 -2 373 261 193 11 chr13 47883882 47884058 -71860840 + L1MB7 LINE L1 5975 6182 -2 4815 191 42 24 chr13 47884195 47885208 -71859690 + MER45B DNA AcHobo 8 1039 -1 2090 97 3 79 chr13 47885225 47885555 -71859343 + AluSx SINE Alu 1 305 -7 310 265 88 10 chr13 47885574 47885676 -71859222 - MIR SINE MIR -82 126 17 2212 123 10 0 chr13 47885742 47886044 -71858854 + AluSx SINE Alu 1 305 -7 622 240 125 10 chr13 47886855 47887047 -71857851 - MIR SINE MIR 0 262 49 204 264 97 69 chr13 47887205 47887277 -71857621 - MER91A DNA MER1_type 0 196 123 2005 108 0 30 chr13 47887502 47887799 -71857099 + AluSg SINE Alu 1 288 -22 306 73 0 0 chr13 47887799 47887840 -71857058 + (TA)n Simple_repeat Simple_repeat 1 41 0 1996 135 0 3 chr13 47887857 47888145 -71856753 + AluSg SINE Alu 1 287 -23 26 0 0 0 chr13 47888145 47888171 -71856727 + AT_rich Low_complexity Low_complexity 1 26 0 259 130 0 0 chr13 47888175 47888221 -71856677 - LTR66 LTR ERVL -171 439 394 21 0 0 0 chr13 47889700 47889721 -71855177 + AT_rich Low_complexity Low_complexity 1 21 0 421 258 110 31 chr13 47890427 47890590 -71854308 - MIR SINE MIR -6 256 81 684 226 64 10 chr13 47890723 47890927 -71853971 + MER20B DNA MER1_type 569 783 0 1843 118 135 32 chr13 47892646 47892986 -71851912 - THE1C LTR MaLR 0 375 1 23 78 0 0 chr13 47893606 47893657 -71851241 + AT_rich Low_complexity Low_complexity 1 51 0 258 32 0 0 chr13 47893658 47893670 -71851228 + (TG)n Simple_repeat Simple_repeat 1 43 0 258 32 0 0 chr13 47893670 47893701 -71851197 + (TG)n Simple_repeat Simple_repeat 2 32 0 258 286 143 31 chr13 47893995 47894093 -71850805 - L2 LINE L2 -50 3222 3114 214 200 0 0 chr13 47894671 47894711 -71850187 + (TAA)n Simple_repeat Simple_repeat 2 41 0 3873 243 121 35 chr13 47895204 47896636 -71848262 - L2 LINE L2 -184 3129 1558 180 0 0 0 chr13 47896659 47896679 -71848219 + (A)n Simple_repeat Simple_repeat 1 20 0 190 244 24 0 chr13 47896686 47896727 -71848171 - L2 LINE L2 -1764 1550 1509 1803 182 54 6 chr13 47896803 47897138 -71847760 + MLT1A1 LTR MaLR 15 365 0 183 100 0 0 chr13 47897321 47897351 -71847547 + (T)n Simple_repeat Simple_repeat 1 30 0 374 109 0 18 chr13 47897368 47897423 -71847475 - LTR7 LTR ERV1 -8 442 389 873 115 92 14 chr13 47897593 47897751 -71847147 - LTR7 LTR ERV1 -232 218 1 2863 95 16 29 chr13 47897751 47898202 -71846696 - HERVH LTR ERV1 0 7713 7269 * 16332 168 62 46 chr13 47898184 47901970 -71842928 - HERVH LTR ERV1 -2693 5020 1172 1911 157 67 66 chr13 47901957 47902685 -71842213 - HERVH LTR ERV1 -6668 1045 1 * 1424 183 116 74 chr13 47902685 47903117 -71841781 - LTR7 LTR ERV1 0 450 1 209 145 29 29 chr13 47903591 47903660 -71841238 + GA-rich Low_complexity Low_complexity 2 70 0 262 341 30 0 chr13 47903851 47903986 -71840912 + L2 LINE L2 2247 2385 -929 835 203 88 30 chr13 47905400 47905655 -71839243 + L1ME1 LINE L1 5915 6182 -2 196 176 0 0 chr13 47905693 47905727 -71839171 + L2 LINE L2 3230 3263 -9 187 263 100 12 chr13 47907277 47907357 -71837541 - MIR SINE MIR 0 262 176 1736 186 0 3 chr13 47907720 47908005 -71836893 + AluJo SINE Alu 1 284 -28 2147 117 3 3 chr13 47908008 47908306 -71836592 - AluSg SINE Alu -12 298 1 25 65 0 0 chr13 47908308 47908354 -71836544 + AT_rich Low_complexity Low_complexity 1 46 0 806 268 106 11 chr13 47908435 47908812 -71836086 - L1ME4a LINE L1 -2 6119 5707 252 250 0 0 chr13 47908816 47908872 -71836026 - L1ME4a LINE L1 -452 5669 5614 2397 94 0 0 chr13 47908888 47909195 -71835703 + AluSx SINE Alu 1 307 -5 2362 89 0 13 chr13 47909220 47909353 -71835545 + AluSg SINE Alu 1 134 -176 2473 64 3 6 chr13 47909353 47909665 -71835233 + AluY SINE Alu 1 311 0 2362 89 0 13 chr13 47909665 47909834 -71835064 + AluSg SINE Alu 134 299 -11 246 128 0 0 chr13 47910007 47910046 -71834852 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 235 299 92 40 chr13 47910821 47910995 -71833903 - MIR SINE MIR -46 216 34 3228 94 16 16 chr13 47911002 47911436 -71833462 + MER57B LTR ERV1 1 434 0 624 276 15 67 chr13 47911783 47912051 -71832847 + MIR SINE MIR 1 254 -8 189 132 0 0 chr13 47912052 47912090 -71832808 + (ATG)n Simple_repeat Simple_repeat 2 39 0 719 235 125 14 chr13 47912586 47912821 -71832077 + MIR SINE MIR 2 261 -1 544 240 114 7 chr13 47913521 47913674 -71831224 + MER69 DNA AcHobo 1 2524 -2 280 207 108 54 chr13 47913709 47913820 -71831078 - MER117 DNA MER1_type -79 118 2 1401 206 74 50 chr13 47913936 47914353 -71830545 + MER31B LTR ERV1 1 427 -39 2354 138 33 33 chr13 47914499 47914862 -71830036 + THE1B LTR MaLR 2 364 0 2046 125 4 0 chr13 47915357 47915636 -71829262 + AluSq SINE Alu 1 280 -33 369 0 0 0 chr13 47915636 47915677 -71829221 + (CA)n Simple_repeat Simple_repeat 1 41 0 551 281 34 0 chr13 47916431 47916577 -71828321 + MLT1J1 LTR MaLR 191 341 -105 232 130 0 43 chr13 47917107 47917153 -71827745 - L2 LINE L2 -5 3308 3265 1172 282 68 18 chr13 47917442 47917822 -71827076 - MER115 DNA AcHobo 0 693 295 324 304 20 0 chr13 47917931 47918033 -71826865 - MER115 DNA AcHobo -589 104 1 330 258 60 26 chr13 47918075 47918143 -71826755 - MER103 DNA DNA -10 156 92 1790 193 73 28 chr13 47918143 47918501 -71826397 - MLT1A2 LTR MaLR 0 374 1 330 258 60 26 chr13 47918501 47918583 -71826315 - MER103 DNA DNA -74 92 1 24 32 0 0 chr13 47919853 47919884 -71825014 + AT_rich Low_complexity Low_complexity 1 31 0 805 144 133 16 chr13 47920515 47920788 -71824110 + MLT1E1 LTR MaLR 1 353 -301 367 274 11 21 chr13 47922275 47922370 -71822528 + L2 LINE L2 3149 3242 -30 320 297 79 39 chr13 47922546 47922677 -71822221 - MIR SINE MIR -63 145 30 287 359 114 15 chr13 47923811 47923883 -71821015 + MIR SINE MIR 2 65 -197 2342 112 0 3 chr13 47923883 47924196 -71820702 - AluSx SINE Alu 0 312 1 287 359 114 15 chr13 47924196 47924254 -71820644 + MIR SINE MIR 65 145 -117 2201 222 38 23 chr13 47924403 47924931 -71819967 - MLT1F LTR MaLR -6 536 1 483 285 85 18 chr13 47924933 47925098 -71819800 + MIR SINE MIR 87 262 0 718 310 56 40 chr13 47925605 47925928 -71818970 - L2 LINE L2 -1 3312 2985 1371 193 0 12 chr13 47926489 47926748 -71818150 + AluJb SINE Alu 40 295 -17 455 262 8 33 chr13 47926758 47926880 -71818018 - MIR3 SINE MIR -21 187 69 376 336 8 8 chr13 47927046 47927174 -71817724 - L2 LINE L2 -973 2341 2214 451 236 66 38 chr13 47927175 47927321 -71817577 - MIR SINE MIR -58 150 20 351 0 0 0 chr13 47928166 47928205 -71816693 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 1910 132 22 0 chr13 47928205 47928477 -71816421 - AluSg SINE Alu -32 278 1 281 270 114 93 chr13 47928520 47928887 -71816011 + L2 LINE L2 1967 2341 -973 260 318 184 20 chr13 47929362 47929682 -71815216 + L2 LINE L2 2473 2739 -533 1458 196 43 4 chr13 47929682 47929958 -71814940 - AluJo SINE Alu -21 291 5 260 318 184 20 chr13 47929958 47930115 -71814783 + L2 LINE L2 2739 3055 -217 1987 167 23 3 chr13 47930198 47930545 -71814353 - MER47A DNA MER2_type -12 354 1 319 307 21 107 chr13 47930575 47930715 -71814183 + L2 LINE L2 3133 3260 -12 250 314 116 8 chr13 47931438 47931556 -71813342 + MIR SINE MIR 23 151 -65 720 265 115 99 chr13 47932048 47932724 -71812174 + HAL1 LINE L1 1117 1803 -704 1256 281 51 8 chr13 47933020 47933411 -71811487 - LTR16A1 LTR ERVL 0 457 50 407 263 11 56 chr13 47933744 47933923 -71810975 + HAL1b LINE L1 746 916 -432 566 289 30 42 chr13 47934041 47934304 -71810594 + HAL1 LINE L1 2246 2505 -2 186 262 90 57 chr13 47934306 47934428 -71810470 + MIR SINE MIR 137 262 0 274 338 50 88 chr13 47934900 47935060 -71809838 + L2 LINE L2 3109 3262 -10 393 102 0 0 chr13 47935060 47935119 -71809779 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 311 231 33 33 chr13 47935328 47935419 -71809479 + MIR SINE MIR 22 112 -150 275 275 150 25 chr13 47935505 47935625 -71809273 + MIR SINE MIR 128 262 0 214 320 200 0 chr13 47935661 47935761 -71809137 - L2 LINE L2 -21 3251 3132 303 313 95 0 chr13 47938395 47938501 -71806397 + MIR SINE MIR 34 148 -66 787 193 47 6 chr13 47939289 47939460 -71805438 - MER5B DNA MER1_type 0 178 1 21 36 0 0 chr13 47939962 47939990 -71804908 + AT_rich Low_complexity Low_complexity 1 28 0 397 296 255 8 chr13 47940786 47941053 -71803845 + L2 LINE L2 2940 3272 0 220 299 11 11 chr13 47941117 47941204 -71803694 + A-rich Low_complexity Low_complexity 4 90 0 207 0 0 0 chr13 47941993 47942016 -71802882 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr13 47942151 47942174 -71802724 + AT_rich Low_complexity Low_complexity 1 23 0 777 252 64 33 chr13 47942244 47942573 -71802325 + MLT1J1 LTR MaLR 86 424 -22 258 169 13 52 chr13 47942761 47942838 -71802060 - L1ME LINE L1 -237 5884 5811 201 306 0 48 chr13 47942936 47942998 -71801900 + MER5A DNA MER1_type 1 59 -130 259 294 88 0 chr13 47943280 47943416 -71801482 - MLT1J LTR MaLR -355 156 9 235 310 187 19 chr13 47943453 47943608 -71801290 + MIR SINE MIR 20 200 -62 993 229 52 4 chr13 47943744 47943975 -71800923 + MIR SINE MIR 15 256 -6 2876 224 84 13 chr13 47944970 47945829 -71799069 - L1MC4a LINE L1 -1 7807 6888 2274 97 7 3 chr13 47947008 47947307 -71797591 - AluSx SINE Alu -12 300 1 233 273 26 13 chr13 47947905 47947982 -71796916 + L1MDa LINE L1 5 82 -6458 290 250 0 0 chr13 47948280 47948348 -71796550 - MIR SINE MIR 0 262 195 680 232 0 0 chr13 47948365 47948490 -71796408 + FLAM_A SINE Alu 1 125 -8 2519 68 0 0 chr13 47948495 47948790 -71796108 + AluSg SINE Alu 1 295 -15 978 236 14 0 chr13 47948830 47949046 -71795852 - MER58A DNA MER1_type 0 224 6 443 256 157 0 chr13 47949055 47949176 -71795722 - MIR SINE MIR -121 141 2 2466 163 63 6 chr13 47949317 47949795 -71795103 - MLT1D LTR MaLR 0 505 1 612 309 132 9 chr13 47950159 47950486 -71794412 - LTR16B LTR ERVL -3 461 95 919 244 141 42 chr13 47951952 47952406 -71792492 - LTR33A LTR ERVL 0 523 25 2429 181 82 0 chr13 47952464 47952940 -71791958 + MLT2B2 LTR ERVL 1 515 0 1729 180 10 14 chr13 47953141 47953430 -71791468 - AluJo SINE Alu -24 288 1 26 0 0 0 chr13 47953701 47953727 -71791171 + AT_rich Low_complexity Low_complexity 1 26 0 527 125 0 0 chr13 47954640 47954720 -71790178 - MADE1 DNA Mariner 0 80 1 326 280 54 0 chr13 47954816 47954909 -71789989 - MIR SINE MIR -129 133 36 354 316 38 30 chr13 47955417 47955550 -71789348 + MER91A DNA MER1_type 40 173 -23 24 0 0 0 chr13 47955745 47955769 -71789129 + AT_rich Low_complexity Low_complexity 1 24 0 182 345 0 0 chr13 47956054 47956109 -71788789 - L2 LINE L2 -17 3255 3201 2359 67 10 13 chr13 47956199 47956499 -71788399 - AluY SINE Alu -12 299 1 1485 249 267 21 chr13 47957278 47958416 -71786482 - L2 LINE L2 -159 3154 1527 292 277 88 7 chr13 47958491 47958639 -71786259 - L1MC/D LINE L1 -682 5480 5318 1968 172 51 109 chr13 47958988 47959576 -71785322 + MLT2B3 LTR ERVL 1 554 0 505 275 95 5 chr13 47959609 47959831 -71785067 + L1MEc LINE L1 1579 1820 -4576 2394 62 13 0 chr13 47959993 47960297 -71784601 - AluY SINE Alu -3 308 1 444 215 79 34 chr13 47960387 47960564 -71784334 - LTR16B LTR ERVL -2 462 278 331 320 39 56 chr13 47960580 47960814 -71784084 - L2 LINE L2 -340 2974 2745 202 287 172 0 chr13 47960834 47960921 -71783977 - L2 LINE L2 -3 3269 3168 597 175 83 0 chr13 47961094 47961214 -71783684 + MER96 DNA MER1_type? 1 130 -45 1626 194 20 13 chr13 47961215 47961514 -71783384 - AluJb SINE Alu -11 301 1 3244 158 46 7 chr13 47961523 47961978 -71782920 - L1MB7 LINE L1 -2 6182 5647 579 74 0 12 chr13 47961978 47962059 -71782839 + MADE1 DNA Mariner 1 80 0 3244 158 46 7 chr13 47962059 47962340 -71782558 - L1MB7 LINE L1 -537 5647 5379 1987 222 132 34 chr13 47963866 47964573 -71780325 + LTR50 LTR ERVL 19 794 -1 5910 155 16 5 chr13 47964919 47966986 -71777912 - L1PB1 LINE L1 -1 6150 4063 421 346 67 31 chr13 47967070 47967324 -71777574 + ERVL LTR ERVL 352 614 -5150 285 396 10 0 chr13 47967450 47967657 -71777241 + ERVL LTR ERVL 775 983 -4781 2255 123 0 0 chr13 47967673 47967973 -71776925 - AluJb SINE Alu -10 302 3 831 300 14 18 chr13 47968067 47968347 -71776551 + ERVL LTR ERVL 2921 3199 -2565 243 291 12 0 chr13 47968371 47968457 -71776441 + L1M4 LINE L1 3681 3767 -2379 375 252 56 9 chr13 47968473 47968580 -71776318 + L2 LINE L2 3196 3307 -6 296 233 31 83 chr13 47968583 47968776 -71776122 + L1M4 LINE L1 3791 3973 -2173 384 243 107 23 chr13 47968782 47968959 -71775939 + L1M4 LINE L1 4362 4553 -1593 189 0 0 0 chr13 47968959 47968980 -71775918 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 439 214 207 21 chr13 47969390 47969535 -71775363 - MIR SINE MIR 0 262 91 30 27 0 0 chr13 47969549 47969586 -71775312 + AT_rich Low_complexity Low_complexity 1 37 0 1166 264 48 50 chr13 47969620 47970083 -71774815 - MLT1C LTR MaLR 0 467 6 248 259 25 37 chr13 47970087 47970168 -71774730 - MIR SINE MIR -180 82 3 206 163 0 23 chr13 47970696 47970739 -71774159 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1760 173 7 20 chr13 47971437 47971738 -71773160 - AluJb SINE Alu -15 297 1 973 205 31 31 chr13 47972398 47972622 -71772276 + MER58A DNA MER1_type 1 224 0 336 293 81 77 chr13 47972807 47973104 -71771794 - L2 LINE L2 -843 2471 2174 25 0 0 0 chr13 47973489 47973514 -71771384 + AT_rich Low_complexity Low_complexity 1 25 0 2866 162 48 3 chr13 47973568 47974135 -71770763 - L1MD3 LINE L1 0 7995 7404 470 153 71 0 chr13 47974135 47974220 -71770678 - MLT1F1 LTR MaLR -442 125 35 771 226 15 0 chr13 47974231 47974430 -71770468 - L1MC3 LINE L1 -702 7083 6882 213 121 0 0 chr13 47974445 47974478 -71770420 + (TG)n Simple_repeat Simple_repeat 2 34 0 1561 226 101 58 chr13 47975316 47975478 -71769420 + L1MEc LINE L1 1724 1878 -4337 1628 169 14 32 chr13 47975478 47975762 -71769136 + AluJb SINE Alu 2 280 -32 1561 226 101 58 chr13 47975762 47976411 -71768487 + L1MEc LINE L1 1878 2498 -3717 2077 142 0 6 chr13 47976411 47976722 -71768176 + AluJb SINE Alu 1 309 -3 1561 226 101 58 chr13 47976722 47976768 -71768130 + L1MEc LINE L1 2498 2541 -3674 2052 146 36 11 chr13 47976768 47977125 -71767773 - MER47A DNA MER2_type 0 366 1 1561 226 101 58 chr13 47977125 47977172 -71767726 + L1MEc LINE L1 2541 2633 -3582 1166 200 92 19 chr13 47977185 47977569 -71767329 + L1M4 LINE L1 5011 5421 -743 389 225 12 50 chr13 47977593 47977753 -71767145 + L1MA10 LINE L1 6180 6333 -1 269 272 43 22 chr13 47978318 47978410 -71766488 - MIR SINE MIR -68 194 101 419 265 71 0 chr13 47978811 47978909 -71765989 - L2 LINE L2 0 3272 3168 28 29 0 0 chr13 47978949 47978984 -71765914 + AT_rich Low_complexity Low_complexity 1 35 0 371 319 48 59 chr13 47979254 47979527 -71765371 - L2 LINE L2 -556 2758 2489 217 210 16 16 chr13 47981228 47981290 -71763608 + T-rich Low_complexity Low_complexity 4 65 0 2297 97 0 19 chr13 47981586 47981896 -71763002 - AluSg SINE Alu -6 304 1 207 0 0 0 chr13 47983143 47983166 -71761732 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr13 47983301 47983324 -71761574 + AT_rich Low_complexity Low_complexity 1 23 0 764 255 64 33 chr13 47983394 47983723 -71761175 + MLT1J1 LTR MaLR 86 424 -22 258 169 13 52 chr13 47983911 47983988 -71760910 - L1ME LINE L1 -237 5884 5811 201 306 0 48 chr13 47984086 47984148 -71760750 + MER5A DNA MER1_type 1 59 -130 2011 234 106 14 chr13 47984924 47985591 -71759307 - L1MC4a LINE L1 -1 7807 7079 234 190 69 0 chr13 47986722 47986780 -71758118 + MER116 DNA Mariner 18 79 -1 842 84 0 0 chr13 47986880 47986987 -71757911 + U6 snRNA snRNA 1 107 0 2054 117 13 3 chr13 47986987 47987304 -71757594 + L1P LINE L1 2354 2673 -3473 1606 173 22 35 chr13 47987529 47987841 -71757057 + AluJo SINE Alu 1 308 -4 2002 259 113 4 chr13 47987882 47988578 -71756320 + L1MEc LINE L1 409 1180 -5216 487 236 180 48 chr13 47988582 47988727 -71756171 + L1MEc LINE L1 1269 1394 -5002 2360 95 0 0 chr13 47988727 47989022 -71755876 - AluSc SINE Alu -14 295 1 487 236 180 48 chr13 47989022 47989249 -71755649 + L1MEc LINE L1 1394 1690 -4706 261 83 0 0 chr13 47989456 47989492 -71755406 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 521 329 134 11 chr13 47990253 47990573 -71754325 - LTR16A LTR ERVL -64 386 32 2291 112 0 13 chr13 47990653 47990965 -71753933 - AluSx SINE Alu -2 310 3 694 279 95 52 chr13 47992526 47992936 -71751962 + MLT1J LTR MaLR 1 526 -89 27 0 0 0 chr13 47992988 47993015 -71751883 + AT_rich Low_complexity Low_complexity 1 27 0 268 167 45 0 chr13 47993038 47993104 -71751794 + CT-rich Low_complexity Low_complexity 2 70 0 280 265 75 20 chr13 47993462 47993662 -71751236 + L1ME4a LINE L1 5754 5964 -157 791 258 107 9 chr13 47994025 47994258 -71750640 + MLT1H1 LTR MaLR 246 501 -54 2479 43 26 0 chr13 47994514 47994816 -71750082 + AluY SINE Alu 1 310 -1 2100 99 0 0 chr13 47996723 47996995 -71747903 + AluSx SINE Alu 1 272 -40 358 105 0 0 chr13 47997603 47997660 -71747238 + Alu SINE Alu 242 298 -3 361 234 16 73 chr13 47997868 47997992 -71746906 + LTR33A LTR ERVL 405 521 -2 379 288 59 33 chr13 47998180 47998333 -71746565 - MIR SINE MIR -71 191 35 2262 189 33 29 chr13 47998333 47998815 -71746083 + MER31A LTR ERV1 2 485 0 2277 93 0 0 chr13 47999356 47999645 -71745253 - AluSg SINE Alu -16 294 6 2035 149 0 0 chr13 47999920 48000221 -71744677 - AluSx SINE Alu -10 302 2 22 35 0 0 chr13 48000739 48000768 -71744130 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 48000934 48000958 -71743940 + AT_rich Low_complexity Low_complexity 1 24 0 379 341 81 17 chr13 48001649 48001822 -71743076 + MER5A DNA MER1_type 5 188 -1 2397 97 7 0 chr13 48001998 48002307 -71742591 - AluSp SINE Alu -2 311 1 512 250 138 40 chr13 48002711 48002935 -71741963 - MIR SINE MIR -13 249 4 204 296 30 91 chr13 48003131 48003265 -71741633 + L2 LINE L2 1720 1840 -1474 2025 188 31 74 chr13 48003265 48003807 -71741091 - LTR40a LTR ERVL 0 519 1 204 296 30 91 chr13 48003807 48003871 -71741027 + L2 LINE L2 1840 1906 -1408 1390 314 131 51 chr13 48003927 48005162 -71739736 - L2 LINE L2 -6 3266 1931 184 261 62 46 chr13 48005166 48005231 -71739667 - MIR SINE MIR -118 144 79 295 270 20 20 chr13 48005492 48005592 -71739306 + MER5B DNA MER1_type 43 142 -36 191 103 26 0 chr13 48007194 48007233 -71737665 + T-rich Low_complexity Low_complexity 2 41 0 863 194 37 46 chr13 48008276 48008492 -71736406 - MER58C DNA MER1_type 0 215 2 241 319 78 44 chr13 48009781 48009939 -71734959 + MIR SINE MIR 23 183 -79 281 269 13 87 chr13 48011360 48011509 -71733389 + MIR SINE MIR 75 212 -50 186 373 67 67 chr13 48011584 48011734 -71733164 - L2 LINE L2 0 3272 3123 23 0 0 0 chr13 48011735 48011758 -71733140 + AT_rich Low_complexity Low_complexity 1 23 0 1035 231 9 5 chr13 48011935 48012156 -71732742 - MER58A DNA MER1_type -2 222 1 372 329 13 20 chr13 48012211 48012360 -71732538 - MIR SINE MIR 0 262 115 333 324 140 16 chr13 48012561 48013067 -71731831 + L1M4 LINE L1 4274 4842 -1304 2386 84 3 0 chr13 48013344 48013652 -71731246 - AluSc SINE Alu 0 309 1 292 258 86 12 chr13 48013779 48013942 -71730956 + L1MC4a LINE L1 5199 5373 -773 404 326 130 33 chr13 48013972 48014303 -71730595 + L1MC4a LINE L1 5542 5907 -255 349 253 63 0 chr13 48014599 48014694 -71730204 - MER94 DNA DNA -6 128 28 235 271 12 35 chr13 48014701 48014786 -71730112 - L2 LINE L2 -1407 1907 1825 2408 84 0 7 chr13 48015058 48015367 -71729531 - AluSg SINE Alu -3 307 1 873 166 40 0 chr13 48015715 48015866 -71729032 - MER47A DNA MER2_type -209 157 1 1259 200 92 19 chr13 48015926 48016311 -71728587 + L1M4 LINE L1 5011 5422 -743 714 213 0 7 chr13 48016335 48016490 -71728408 + L1MA10 LINE L1 6180 6333 -1 367 38 19 293 chr13 48016513 48016619 -71728279 + MADE1 DNA Mariner 1 77 -3 806 220 18 6 chr13 48017008 48017176 -71727722 + MER5A DNA MER1_type 15 184 -5 1141 200 86 40 chr13 48018017 48018245 -71726653 + L1MC5 LINE L1 7501 7756 -205 2284 88 3 3 chr13 48018245 48018542 -71726356 + AluSg SINE Alu 1 297 -13 1141 200 86 40 chr13 48018542 48018708 -71726190 + L1MC5 LINE L1 7756 7913 -48 648 143 20 0 chr13 48018856 48018954 -71725944 - FLAM_C SINE Alu -34 109 10 21 36 0 0 chr13 48018969 48018997 -71725901 + AT_rich Low_complexity Low_complexity 1 28 0 1885 172 21 0 chr13 48020091 48020428 -71724470 - MER2 DNA MER2_type 0 344 1 2159 119 0 3 chr13 48020528 48020830 -71724068 + AluSq SINE Alu 1 301 -12 1362 225 35 24 chr13 48021167 48021536 -71723362 + MLT1A2 LTR MaLR 1 373 -1 3130 197 7 34 chr13 48021539 48022031 -71722867 + MLT1A2-int LTR MaLR 3 474 -1261 2153 127 43 3 chr13 48022031 48022378 -71722520 + MER46B DNA MER2_type 1 236 0 3130 197 7 34 chr13 48022378 48022561 -71722337 + MLT1A2-int LTR MaLR 474 660 -1075 230 207 0 52 chr13 48022623 48022681 -71722217 + MLT1A2-int LTR MaLR 829 883 -488 400 277 0 0 chr13 48022711 48022805 -71722093 + MLT-int LTR MaLR 696 789 -946 * 2220 202 84 55 chr13 48022790 48023359 -71721539 + MLT1A2-int LTR MaLR 1150 1735 0 1403 204 23 67 chr13 48023362 48023750 -71721148 + MLT1A2 LTR MaLR 4 374 0 6189 194 26 12 chr13 48023751 48024705 -71720193 - L1 LINE L1 -912 5234 4294 228 35 0 0 chr13 48024705 48024734 -71720164 + (TG)n Simple_repeat Simple_repeat 2 30 0 6189 194 26 12 chr13 48024734 48024819 -71720079 - L1 LINE L1 -1852 4294 4212 7238 96 17 18 chr13 48024819 48025887 -71719011 + MER11C LTR ERVK 1 1067 -4 6189 194 26 12 chr13 48025887 48026176 -71718722 - L1 LINE L1 -1934 4212 3887 1179 251 42 26 chr13 48026200 48026583 -71718315 - L1ME3A LINE L1 -14 6156 5768 418 231 109 30 chr13 48026638 48026809 -71718089 - L1ME3A LINE L1 -536 5626 5471 2071 136 3 0 chr13 48026819 48027113 -71717785 - AluSx SINE Alu -17 295 1 351 277 142 36 chr13 48027114 48027446 -71717452 - L1ME3A LINE L1 -776 5370 5004 311 188 47 47 chr13 48027492 48027577 -71717321 - L1MC4 LINE L1 -8 8034 7950 302 245 113 60 chr13 48028160 48028311 -71716587 + MIR SINE MIR 94 252 -10 3751 147 86 15 chr13 48029022 48029757 -71715141 - L1MC2 LINE L1 -13 6331 5545 21 0 0 0 chr13 48030099 48030120 -71714778 + AT_rich Low_complexity Low_complexity 1 21 0 2376 236 30 20 chr13 48030134 48030740 -71714158 - MER74B LTR ERVL -10 612 1 343 256 62 67 chr13 48030780 48030975 -71713923 - L1ME3A LINE L1 -15 6653 6460 445 273 54 41 chr13 48031041 48031283 -71713615 - L1ME3A LINE L1 -220 6448 6204 329 201 24 110 chr13 48031323 48031420 -71713478 - L1ME3A LINE L1 -874 5770 5691 2282 98 0 3 chr13 48031420 48031717 -71713181 - AluSx SINE Alu -15 297 2 329 201 24 110 chr13 48031717 48031783 -71713115 - L1ME3A LINE L1 -953 5691 5621 1060 201 0 6 chr13 48031809 48031988 -71712910 + AluJb SINE Alu 113 290 -22 802 260 93 52 chr13 48032053 48032306 -71712592 - L1ME3A LINE L1 -1103 5541 5300 2065 74 8 0 chr13 48032306 48032562 -71712336 - AluY SINE Alu -19 292 35 802 260 93 52 chr13 48032562 48032733 -71712165 - L1ME3A LINE L1 -1344 5300 5137 201 74 0 0 chr13 48032733 48032760 -71712138 + (CA)n Simple_repeat Simple_repeat 2 28 0 802 260 93 52 chr13 48032760 48032988 -71711910 - L1ME3A LINE L1 -1507 5137 4852 315 0 0 0 chr13 48032988 48033023 -71711875 + (TG)n Simple_repeat Simple_repeat 2 36 0 802 260 93 52 chr13 48033023 48033098 -71711800 - L1ME3A LINE L1 -1792 4852 4782 1611 191 11 7 chr13 48033216 48033498 -71711400 + AluJb SINE Alu 1 283 -29 602 14 0 0 chr13 48033567 48033638 -71711260 - L1PA3 LINE L1 -8 6147 6077 369 263 12 23 chr13 48033638 48033809 -71711089 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 29897 33 17 3 chr13 48033809 48039811 -71705087 - L1PA3 LINE L1 -34 6121 2 360 284 83 43 chr13 48039815 48040139 -71704759 - L1ME3A LINE L1 -2299 4345 4009 624 250 128 0 chr13 48040602 48040774 -71704124 - MLT1I LTR MaLR -2 407 214 498 296 73 57 chr13 48040858 48041105 -71703793 - MIR SINE MIR -1 261 11 2237 241 28 31 chr13 48041371 48041977 -71702921 - L1ME3A LINE L1 -5934 608 5 21 36 0 0 chr13 48043152 48043180 -71701718 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr13 48043617 48043655 -71701243 + AT_rich Low_complexity Low_complexity 1 38 0 1110 168 61 4 chr13 48044099 48044379 -71700519 + L1 LINE L1 3163 3458 -2688 38 258 0 0 chr13 48044784 48044873 -71700025 + AT_rich Low_complexity Low_complexity 1 89 0 4315 174 25 14 chr13 48045172 48046078 -71698820 + L1 LINE L1 3163 4078 -2068 310 309 189 24 chr13 48046997 48047330 -71697568 + L1MC/D LINE L1 5417 5804 -366 1697 144 0 4 chr13 48047740 48048012 -71696886 - AluJo SINE Alu 0 318 48 325 308 119 13 chr13 48048297 48048456 -71696442 - MIR3 SINE MIR -2 206 31 789 234 66 50 chr13 48048721 48049188 -71695710 + L1MB8 LINE L1 1966 2424 -3958 2023 149 0 10 chr13 48049188 48049483 -71695415 + AluSx SINE Alu 4 295 -17 789 234 66 50 chr13 48049483 48049521 -71695377 + L1MB8 LINE L1 2424 2460 -3922 1409 174 76 14 chr13 48049521 48049796 -71695102 - AluJo SINE Alu -20 292 1 789 234 66 50 chr13 48049796 48050230 -71694668 + L1MB8 LINE L1 2460 2991 -3391 1151 191 15 5 chr13 48050237 48050441 -71694457 - AluJo SINE Alu -20 292 87 7724 206 67 36 chr13 48050441 48050943 -71693955 + L1MB8 LINE L1 2986 3471 -2949 228 135 0 0 chr13 48050943 48050980 -71693918 + tRNA-Gly-GGA tRNA tRNA 3 39 -36 7724 206 67 36 chr13 48050980 48052362 -71692536 + L1MB8 LINE L1 3471 5032 -1388 2047 134 17 3 chr13 48052362 48052654 -71692244 + AluSx SINE Alu 3 298 -14 7724 206 67 36 chr13 48052654 48053798 -71691100 + L1MB8 LINE L1 5032 6140 -280 1818 29 0 0 chr13 48053800 48054006 -71690892 + AluY SINE Alu 88 293 -18 515 206 21 14 chr13 48054017 48054158 -71690740 + L1MB8 LINE L1 6267 6408 -6 23 33 0 0 chr13 48054174 48054204 -71690694 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 48055329 48055367 -71689531 + AT_rich Low_complexity Low_complexity 1 38 0 365 298 0 19 chr13 48057272 48057376 -71687522 + L2 LINE L2 3171 3272 0 1047 201 35 15 chr13 48057858 48058057 -71686841 - MER3 DNA MER1_type -6 203 1 451 167 0 0 chr13 48058824 48058902 -71685996 - MIR SINE MIR -21 241 164 459 65 0 117 chr13 48059182 48059258 -71685640 + MLT1B LTR MaLR 24 90 -300 1552 155 44 25 chr13 48059258 48059965 -71684933 - LTR1B LTR ERV1 0 826 1 1248 157 144 0 chr13 48059983 48060212 -71684686 + MLT1B LTR MaLR 127 388 -2 2263 102 3 0 chr13 48061300 48061604 -71683294 - AluSq SINE Alu -2 311 7 392 287 19 9 chr13 48062941 48063049 -71681849 + L2 LINE L2 3164 3272 0 584 290 94 45 chr13 48063086 48063125 -71681773 - L2 LINE L2 -1 3312 3276 2286 109 0 6 chr13 48063125 48063438 -71681460 + AluSq SINE Alu 1 311 -2 584 290 94 45 chr13 48063438 48063729 -71681169 - L2 LINE L2 -37 3276 2966 1565 181 31 21 chr13 48064090 48064378 -71680520 + AluJb SINE Alu 1 291 -21 904 188 0 0 chr13 48064538 48064682 -71680216 + FRAM SINE Alu 12 155 -21 4354 169 42 36 chr13 48064789 48065131 -71679767 - L1MB5 LINE L1 -8 6166 5828 2389 91 3 0 chr13 48065131 48065438 -71679460 - AluSx SINE Alu -4 308 1 4354 169 42 36 chr13 48065438 48066044 -71678854 - L1MB5 LINE L1 -346 5828 5219 2135 126 0 7 chr13 48066044 48066354 -71678544 + AluSx SINE Alu 1 308 -4 4354 169 42 36 chr13 48066354 48066703 -71678195 - L1MB5 LINE L1 -955 5219 4874 345 301 58 0 chr13 48066706 48066809 -71678089 - L1MC4a LINE L1 -942 6866 6758 1173 189 15 64 chr13 48067047 48067306 -71677592 - MLT1B LTR MaLR -5 385 140 1544 186 29 26 chr13 48067306 48067743 -71677155 + LTR2B LTR ERV1 1 490 0 894 133 0 21 chr13 48067743 48067886 -71677012 - MLT1B LTR MaLR -247 143 4 237 267 35 0 chr13 48068187 48068273 -71676625 + L1MEd LINE L1 4 92 -6027 1125 285 99 62 chr13 48068290 48069476 -71675422 + L1MEd LINE L1 143 1481 -1009 264 260 0 0 chr13 48069483 48069533 -71675365 + AluJ/monomer SINE Alu 1 50 -252 1286 151 15 5 chr13 48069663 48069869 -71675029 - AluJb SINE Alu -104 208 1 3588 108 17 17 chr13 48069869 48070461 -71674437 - MER4B LTR ERV1 -21 758 1 1255 160 14 5 chr13 48070461 48070674 -71674224 + AluJo SINE Alu 90 304 -8 340 319 98 39 chr13 48070675 48070929 -71673969 + L1M4c LINE L1 1528 1796 -4588 284 79 0 0 chr13 48071220 48071258 -71673640 - MER4E LTR ERV1 -99 667 630 4095 166 53 25 chr13 48071545 48072405 -71672493 + MER4D LTR ERV1 1 593 -17 1006 186 26 0 chr13 48072409 48072602 -71672296 + L1PB1 LINE L1 3 200 -6663 9709 115 113 6 chr13 48072602 48074225 -71670673 + L1PB1 LINE L1 634 2429 -4434 12643 178 28 21 chr13 48074325 48075149 -71669749 + L1PB1 LINE L1 3172 3989 -2878 2168 125 0 0 chr13 48075149 48075454 -71669444 + AluSx SINE Alu 8 312 0 12643 178 28 21 chr13 48075454 48078305 -71666593 + L1PB1 LINE L1 3989 6867 0 1938 154 10 0 chr13 48079709 48080007 -71664891 + AluSx SINE Alu 1 301 -11 410 47 16 109 chr13 48080011 48080139 -71664759 + (GGAAA)n Simple_repeat Simple_repeat 3 118 0 2330 109 0 0 chr13 48080470 48080772 -71664126 - AluSg SINE Alu -8 302 1 236 299 69 50 chr13 48081602 48081901 -71662997 + L1M4c LINE L1 2794 3103 -3279 1730 169 3 39 chr13 48081901 48082209 -71662689 + AluJb SINE Alu 5 301 -11 236 299 69 50 chr13 48082209 48082270 -71662628 + L1M4c LINE L1 3103 3161 -3221 1131 135 22 44 chr13 48082435 48082664 -71662234 + L1PB1 LINE L1 5926 6149 -2 399 191 12 0 chr13 48082808 48082892 -71662006 - MER46B DNA MER2_type -5 231 147 212 143 24 0 chr13 48082901 48082943 -71661955 + (TA)n Simple_repeat Simple_repeat 2 44 0 320 225 56 11 chr13 48082943 48083032 -71661866 - L1MC4 LINE L1 -1338 6704 6612 211 93 47 0 chr13 48083032 48083075 -71661823 + (TA)n Simple_repeat Simple_repeat 1 45 0 1469 127 94 22 chr13 48083080 48083347 -71661551 - MER46B DNA MER2_type -75 161 1 673 154 48 0 chr13 48083643 48083767 -71661131 + MER33 DNA MER1_type 1 121 -97 1251 120 0 0 chr13 48083770 48083970 -71660928 + L1MA4 LINE L1 4132 4331 -1815 894 122 0 0 chr13 48083970 48084085 -71660813 + FLAM_C SINE Alu 1 115 -28 24 0 0 0 chr13 48084087 48084111 -71660787 + AT_rich Low_complexity Low_complexity 1 24 0 696 168 34 0 chr13 48084111 48084260 -71660638 + L1MA4 LINE L1 4316 4469 -1677 * 5782 134 30 68 chr13 48084250 48084778 -71660120 + L1MA4 LINE L1 4742 5289 -1011 855 154 8 0 chr13 48084778 48084908 -71659990 + FLAM_C SINE Alu 2 132 -1 5782 134 30 68 chr13 48084908 48085558 -71659340 + L1MA4 LINE L1 5289 5832 -468 1796 171 3 7 chr13 48085558 48085867 -71659031 + AluJo SINE Alu 5 312 0 5782 134 30 68 chr13 48085867 48086286 -71658612 + L1MA4 LINE L1 5832 6265 -35 402 150 218 0 chr13 48086302 48086449 -71658449 + MER33 DNA MER1_type 111 289 -35 327 314 51 80 chr13 48087015 48087326 -71657572 - L2 LINE L2 -229 3043 2738 352 237 72 10 chr13 48087377 48087474 -71657424 - L1M4 LINE L1 -2992 3154 3052 3853 119 3 18 chr13 48087552 48088163 -71656735 - L1PA13 LINE L1 -3 6160 5559 28 0 0 0 chr13 48088223 48088251 -71656647 + AT_rich Low_complexity Low_complexity 1 28 0 1440 153 12 97 chr13 48088251 48088571 -71656327 - AluJb SINE Alu -9 293 1 255 191 16 63 chr13 48088783 48088846 -71656052 + Charlie4 DNA MER1_type 1 60 -1901 845 86 86 0 chr13 48088973 48089101 -71655797 + MER85 DNA T2_type 1 139 0 21 36 0 0 chr13 48089438 48089466 -71655432 + AT_rich Low_complexity Low_complexity 1 28 0 1124 71 13 0 chr13 48089775 48089929 -71654969 + L1PA7 LINE L1 5999 6154 0 464 297 87 35 chr13 48089948 48090177 -71654721 + MIR SINE MIR 20 260 -2 266 271 73 10 chr13 48090287 48090383 -71654515 + MARNA DNA Mariner 157 258 -328 405 289 60 27 chr13 48091033 48091182 -71653716 - L2 LINE L2 -8 3305 3152 257 247 136 25 chr13 48091314 48091395 -71653503 + MLT1H LTR MaLR 179 268 -287 548 196 80 22 chr13 48091474 48091612 -71653286 + MLT1H LTR MaLR 400 545 -4 2400 76 0 0 chr13 48092275 48092564 -71652334 - AluSg SINE Alu -21 289 1 295 313 9 0 chr13 48092585 48092700 -71652198 - L1M4 LINE L1 -813 5333 5218 2623 109 46 2 chr13 48092814 48093228 -71651670 + LTR23 LTR ERV1 1 432 -5 518 377 27 54 chr13 48093719 48094197 -71650701 - L2 LINE L2 0 3272 2808 392 202 70 9 chr13 48094297 48094411 -71650487 - L1MC4 LINE L1 -3 8039 7919 670 256 107 11 chr13 48094443 48094705 -71650193 - L1MC4 LINE L1 -656 7386 7100 542 196 0 0 chr13 48094706 48094798 -71650100 + AluJ/FLAM SINE Alu 3 94 -218 556 71 0 44 chr13 48094798 48094911 -71649987 + (GGAGA)n Simple_repeat Simple_repeat 3 110 0 24 0 0 0 chr13 48095945 48095969 -71648929 + AT_rich Low_complexity Low_complexity 1 24 0 183 279 23 0 chr13 48096925 48096968 -71647930 - L2 LINE L2 -12 3260 3217 590 244 58 13 chr13 48097068 48097224 -71647674 - MIR SINE MIR -18 244 82 414 261 39 61 chr13 48097867 48098047 -71646851 + L1ME4a LINE L1 5628 5803 -318 266 309 48 0 chr13 48098157 48098283 -71646615 + L1ME4a LINE L1 5979 6110 -11 207 0 0 0 chr13 48099255 48099278 -71645620 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 808 268 30 5 chr13 48099365 48099563 -71645335 - MER20 DNA MER1_type -13 206 4 640 220 39 114 chr13 48099593 48099703 -71645195 + MIR SINE MIR 20 137 -125 2322 99 0 0 chr13 48099703 48099996 -71644902 - AluSx SINE Alu -19 293 1 640 220 39 114 chr13 48099996 48100140 -71644758 + MIR SINE MIR 137 255 -7 22 80 0 0 chr13 48100263 48100313 -71644585 + AT_rich Low_complexity Low_complexity 1 50 0 1733 171 18 0 chr13 48100453 48100733 -71644165 + AluJo SINE Alu 7 291 -21 296 208 113 66 chr13 48100761 48100867 -71644031 + MER94 DNA DNA 4 114 -20 1485 103 0 0 chr13 48101032 48101246 -71643652 + L1PA8 LINE L1 5945 6158 -14 413 335 71 71 chr13 48102681 48103063 -71641835 - L2 LINE L2 -19 3253 2872 227 238 24 36 chr13 48103091 48103175 -71641723 + L1MEd LINE L1 36 118 -6001 1517 183 76 0 chr13 48103286 48103548 -71641350 - AluJo SINE Alu -30 282 1 226 309 15 29 chr13 48104416 48104484 -71640414 + L2 LINE L2 3201 3267 -5 190 268 24 0 chr13 48104880 48104921 -71639977 + MIR SINE MIR 45 86 -176 398 318 64 88 chr13 48105320 48105554 -71639344 + L3 LINE CR1 561 788 -789 2213 108 0 3 chr13 48105554 48105850 -71639048 + AluSx SINE Alu 1 295 -17 398 318 64 88 chr13 48105850 48105911 -71638987 + L3 LINE CR1 788 849 -728 356 301 165 37 chr13 48106805 48107077 -71637821 + L3 LINE CR1 916 1222 -355 526 115 0 23 chr13 48107087 48107174 -71637724 - AluSc SINE Alu -224 85 1 205 359 185 0 chr13 48107174 48107369 -71637529 + L3 LINE CR1 1345 1575 -2 412 274 65 91 chr13 48109211 48109328 -71635570 + L3 LINE CR1 1321 1440 -137 2215 121 3 0 chr13 48109328 48109633 -71635265 - AluSx SINE Alu -6 306 1 412 274 65 91 chr13 48109633 48109778 -71635120 + L3 LINE CR1 1440 1576 -1 22 35 0 0 chr13 48110658 48110687 -71634211 + AT_rich Low_complexity Low_complexity 1 29 0 260 128 21 21 chr13 48111642 48111689 -71633209 + L2 LINE L2 3267 3313 0 558 196 8 145 chr13 48111943 48112178 -71632720 + L2 LINE L2 1882 2084 -1230 833 140 0 29 chr13 48112180 48112316 -71632582 - FLAM_C SINE Alu 0 133 2 1788 137 29 7 chr13 48112363 48112669 -71632229 + L1MB3 LINE L1 5871 6183 0 1751 219 93 32 chr13 48112744 48113332 -71631566 + MLT1E3 LTR MaLR 1 624 0 403 258 70 103 chr13 48113332 48113592 -71631306 - MLT1J LTR MaLR -65 446 194 2148 107 27 3 chr13 48113592 48113892 -71631006 + AluSg SINE Alu 1 307 -3 2865 157 44 32 chr13 48113942 48114171 -71630727 + L1M4c LINE L1 338 563 -5821 1674 144 50 22 chr13 48114171 48114448 -71630450 + AluJo SINE Alu 1 285 -27 2865 157 44 32 chr13 48114448 48114803 -71630095 + L1M4c LINE L1 563 929 -5455 289 143 0 0 chr13 48114830 48114879 -71630019 + L1M4c LINE L1 910 958 -5426 7871 60 14 0 chr13 48114879 48115854 -71629044 - HERVL LTR ERVL -1775 3879 2891 1428 88 49 0 chr13 48115854 48116058 -71628840 - MLT2A1 LTR ERVL -230 214 1 200 200 60 0 chr13 48116533 48116583 -71628315 + MER5B DNA MER1_type 27 79 -99 835 276 60 4 chr13 48116857 48117089 -71627809 - MIR SINE MIR -1 261 17 306 305 34 42 chr13 48117994 48118112 -71626786 - L2 LINE L2 -15 3298 3182 29 28 0 0 chr13 48118575 48118611 -71626287 + AT_rich Low_complexity Low_complexity 1 36 0 718 92 0 0 chr13 48118843 48118941 -71625957 + HY3 scRNA scRNA 2 99 -2 21 0 0 0 chr13 48119966 48119987 -71624911 + AT_rich Low_complexity Low_complexity 1 21 0 319 300 97 74 chr13 48120171 48120605 -71624293 - L2 LINE L2 -101 3171 2726 575 193 179 47 chr13 48123127 48123401 -71621497 - MER114 LTR ERV -338 310 1 254 268 14 0 chr13 48123745 48123816 -71621082 - MER94 DNA DNA -62 72 1 198 0 0 0 chr13 48125246 48125268 -71619630 + (T)n Simple_repeat Simple_repeat 1 22 0 595 143 0 0 chr13 48125482 48125573 -71619325 - FLAM_C SINE Alu -36 107 17 973 238 82 0 chr13 48126470 48126701 -71618197 - MIR SINE MIR -11 251 2 776 311 227 27 chr13 48126863 48127681 -71617217 - L2 LINE L2 -497 2817 1836 2163 69 7 31 chr13 48127696 48128017 -71616881 + AluY SINE Alu 1 314 0 596 280 85 30 chr13 48128170 48128570 -71616328 + L1ME LINE L1 4905 5326 -820 637 247 116 26 chr13 48128585 48128855 -71616043 + L1ME LINE L1 5414 5715 -455 957 218 30 26 chr13 48128889 48129123 -71615775 + L2 LINE L2 2152 2386 -928 799 196 54 34 chr13 48129124 48129328 -71615570 - L1ME LINE L1 -436 5734 5527 1182 252 102 62 chr13 48129329 48129765 -71615133 + L2 LINE L2 2687 3160 -153 1595 202 14 7 chr13 48129765 48130062 -71614836 - AluJb SINE Alu -13 299 1 1182 252 102 62 chr13 48130062 48130222 -71614676 + L2 LINE L2 3160 3312 -1 180 0 0 0 chr13 48130225 48130245 -71614653 + (A)n Simple_repeat Simple_repeat 1 20 0 232 248 99 10 chr13 48130288 48130389 -71614509 + L1ME LINE L1 5765 5874 -296 304 327 201 38 chr13 48131404 48132192 -71612706 - L2 LINE L2 -2297 1017 102 371 253 272 0 chr13 48132494 48132656 -71612242 + MIR SINE MIR 57 262 0 205 280 182 7 chr13 48132683 48132826 -71612072 - MIR SINE MIR -1 261 94 22 35 0 0 chr13 48133157 48133186 -71611712 + AT_rich Low_complexity Low_complexity 1 29 0 2415 87 0 0 chr13 48134895 48135195 -71609703 + AluSx SINE Alu 1 300 -12 585 218 223 32 chr13 48136097 48136285 -71608613 + MIR SINE MIR 14 237 -25 22 0 0 0 chr13 48136296 48136318 -71608580 + AT_rich Low_complexity Low_complexity 1 22 0 487 292 3 43 chr13 48136474 48136732 -71608166 + CT-rich Low_complexity Low_complexity 1 247 0 233 261 130 72 chr13 48137720 48137858 -71607040 + MER5A DNA MER1_type 7 152 -37 287 308 41 82 chr13 48139004 48139150 -71605748 + MIR3 SINE MIR 6 145 -63 224 330 204 23 chr13 48139173 48139437 -71605461 + L2 LINE L2 1773 2084 -1230 215 343 15 0 chr13 48139478 48139545 -71605353 - L2 LINE L2 -19 3253 3186 887 275 191 14 chr13 48139811 48139965 -71604933 - L2 LINE L2 -9 3304 3179 2228 87 31 0 chr13 48139965 48140252 -71604646 + AluSx SINE Alu 2 297 -15 887 275 191 14 chr13 48140252 48140522 -71604376 - L2 LINE L2 -134 3179 2805 324 292 0 0 chr13 48140526 48140598 -71604300 + L2 LINE L2 3188 3259 -13 1793 164 59 0 chr13 48140990 48141313 -71603585 - MER2 DNA MER2_type -2 342 1 29805 98 13 20 chr13 48141633 48147949 -71596949 + L1PA7 LINE L1 128 6469 0 371 282 97 32 chr13 48149112 48149236 -71595662 - L2 LINE L2 -2 3311 3180 965 181 10 10 chr13 48149726 48149925 -71594973 - L1MB3 LINE L1 0 6183 5985 853 247 43 0 chr13 48150071 48150257 -71594641 + MIR SINE MIR 10 203 -59 2415 237 228 52 chr13 48150421 48151334 -71593564 + L2 LINE L2 1413 2556 -758 2329 104 0 0 chr13 48151334 48151631 -71593267 - AluSg SINE Alu -13 297 1 2415 237 228 52 chr13 48151631 48151821 -71593077 + L2 LINE L2 2556 2711 -603 589 245 51 51 chr13 48151828 48152024 -71592874 - MER20 DNA MER1_type 0 219 24 677 300 32 62 chr13 48152029 48152509 -71592389 + L2 LINE L2 2714 3177 -136 252 364 20 33 chr13 48152996 48153147 -71591751 + LTR67 LTR ERVL 94 242 -315 2186 115 10 0 chr13 48154217 48154512 -71590386 - AluSx SINE Alu -9 303 6 256 282 51 0 chr13 48155109 48155187 -71589711 - U4 snRNA snRNA -63 82 1 981 313 163 25 chr13 48155325 48155835 -71589063 + L2 LINE L2 2240 2679 -593 733 224 0 114 chr13 48155835 48156080 -71588818 - MER20 DNA MER1_type -1 218 2 981 313 163 25 chr13 48156080 48156475 -71588423 + L2 LINE L2 2679 3270 -2 478 192 20 10 chr13 48156583 48156682 -71588216 - MER5A DNA MER1_type -86 103 4 22 35 0 0 chr13 48156741 48156770 -71588128 + AT_rich Low_complexity Low_complexity 1 29 0 429 255 189 36 chr13 48157132 48157328 -71587570 - MIR SINE MIR -34 228 3 240 190 139 0 chr13 48157434 48157513 -71587385 - L1MB8 LINE L1 -12 6166 6077 2790 150 87 93 chr13 48157514 48158293 -71586605 - L1MB7 LINE L1 -62 6122 5340 2437 70 0 26 chr13 48158293 48158606 -71586292 - AluSg SINE Alu -5 305 1 2790 150 87 93 chr13 48158606 48158998 -71585900 - L1MB7 LINE L1 -844 5340 4947 21 36 0 0 chr13 48159667 48159695 -71585203 + AT_rich Low_complexity Low_complexity 1 28 0 440 92 77 0 chr13 48160339 48160404 -71584494 - AluJo SINE Alu -19 293 224 1036 178 0 6 chr13 48160404 48160578 -71584320 - AluJo SINE Alu -139 173 1 1950 147 0 0 chr13 48160791 48161083 -71583815 - AluSx SINE Alu -7 305 14 21 57 0 0 chr13 48162162 48162197 -71582701 + AT_rich Low_complexity Low_complexity 1 35 0 247 250 65 21 chr13 48162462 48162644 -71582254 - L2 LINE L2 -2 3311 3032 369 281 187 29 chr13 48163206 48163377 -71581521 - MIR SINE MIR -37 225 28 1560 197 17 14 chr13 48163506 48163800 -71581098 + AluJo SINE Alu 1 295 -17 501 291 90 85 chr13 48164101 48164479 -71580419 - L2 LINE L2 -5 3267 2888 271 287 75 0 chr13 48164560 48164654 -71580244 + MIR SINE MIR 57 157 -105 295 271 86 57 chr13 48165375 48165515 -71579383 + MIR SINE MIR 48 191 -71 2081 133 0 27 chr13 48166318 48166619 -71578279 - AluSx SINE Alu -19 293 1 743 158 0 24 chr13 48166693 48166820 -71578078 + FLAM_C SINE Alu 1 124 -9 34 65 0 0 chr13 48166820 48166882 -71578016 + AT_rich Low_complexity Low_complexity 1 62 0 767 155 65 0 chr13 48166943 48167111 -71577787 + L1MD3 LINE L1 7817 7995 0 197 309 96 11 chr13 48167138 48167232 -71577666 - MIR3 SINE MIR -43 165 64 791 139 0 0 chr13 48167314 48167429 -71577469 + FLAM_C SINE Alu 1 115 -18 483 18 0 0 chr13 48167430 48167486 -71577412 + (CTA)n Simple_repeat Simple_repeat 1 56 0 444 269 110 59 chr13 48168289 48168890 -71576008 - L1MC4a LINE L1 -335 5786 5303 2273 108 0 0 chr13 48169906 48170203 -71574695 + AluSx SINE Alu 1 297 -15 13492 167 41 14 chr13 48171029 48173558 -71571340 - L1M1 LINE L1 -494 6511 4053 794 183 0 0 chr13 48173558 48173689 -71571209 - FLAM_A SINE Alu -2 131 1 13492 167 41 14 chr13 48173689 48174116 -71570782 - L1M1 LINE L1 -2952 4053 3639 2265 93 3 3 chr13 48174116 48174416 -71570482 + AluSc SINE Alu 1 300 -9 13492 167 41 14 chr13 48174416 48175012 -71569886 - L1M1 LINE L1 -3366 3639 2865 6784 63 29 6 chr13 48175027 48175954 -71568944 - L1PA6 LINE L1 0 6154 5225 40657 33 22 2 chr13 48175965 48181987 -71562911 - L1PA2 LINE L1 -3 6152 13 36432 76 9 10 chr13 48181988 48187226 -71557672 - L1PA6 LINE L1 -911 5235 1 10442 167 27 19 chr13 48187226 48188048 -71556850 - L1M1 LINE L1 -3970 2879 2065 1875 109 18 7 chr13 48188048 48188322 -71556576 - AluSq SINE Alu -1 312 36 10442 167 27 19 chr13 48188322 48190261 -71554637 - L1M1 LINE L1 -4784 2065 83 31 68 0 0 chr13 48190801 48190860 -71554038 + AT_rich Low_complexity Low_complexity 1 59 0 1808 158 24 3 chr13 48190881 48191172 -71553726 + AluJo SINE Alu 1 297 -15 29 0 0 0 chr13 48191353 48191382 -71553516 + AT_rich Low_complexity Low_complexity 1 29 0 390 286 143 24 chr13 48191680 48191890 -71553008 - MER112 DNA MER1_type -11 249 15 664 300 58 19 chr13 48192690 48193082 -71551816 - MER20B DNA MER1_type -327 456 12 299 224 103 19 chr13 48193667 48193774 -71551124 + MIR SINE MIR 144 259 -3 382 143 0 16 chr13 48193899 48193962 -71550936 - MER97a DNA MER1_type? -715 179 118 375 286 87 36 chr13 48194030 48194226 -71550672 + MIR SINE MIR 7 212 -50 29 0 0 0 chr13 48194595 48194624 -71550274 + AT_rich Low_complexity Low_complexity 1 29 0 453 236 143 33 chr13 48194790 48194972 -71549926 + L3b LINE CR1 1230 1431 -152 1745 205 85 17 chr13 48195815 48196288 -71548610 - MLT1D LTR MaLR 0 505 1 280 56 0 0 chr13 48196317 48196353 -71548545 + MER30 DNA MER1_type 1 36 -194 531 95 0 0 chr13 48196365 48196439 -71548459 - MADE1 DNA Mariner -5 75 2 * 1032 119 40 0 chr13 48196439 48196588 -71548310 + MER30 DNA MER1_type 76 230 0 450 310 129 25 chr13 48196701 48197182 -71547716 + L1M4 LINE L1 3759 4289 -1857 5578 80 22 1 chr13 48199036 48199797 -71545101 - L1P LINE L1 -1873 4273 3497 2313 63 0 0 chr13 48199797 48200083 -71544815 + L1PA7 LINE L1 5856 6141 -13 1977 150 10 0 chr13 48200256 48200549 -71544349 - AluJo SINE Alu -16 296 1 2287 126 118 65 chr13 48200970 48201478 -71543420 + L1MB7 LINE L1 5631 6165 -19 1642 173 29 0 chr13 48202171 48202478 -71542420 - AluJb SINE Alu 0 315 1 3562 195 69 49 chr13 48202693 48203658 -71541240 - L1MC4 LINE L1 -562 7480 6496 1029 169 0 0 chr13 48204200 48204360 -71540538 + AluSg/x SINE Alu 135 294 -16 839 196 0 20 chr13 48204384 48204532 -71540366 + FRAM SINE Alu 2 146 -30 597 233 42 62 chr13 48204764 48204957 -71539941 + MER5A DNA MER1_type 1 189 0 1667 152 10 35 chr13 48205427 48205740 -71539158 - AluJo SINE Alu 0 306 1 21 0 0 0 chr13 48205780 48205801 -71539097 + AT_rich Low_complexity Low_complexity 1 21 0 183 318 0 0 chr13 48206866 48206910 -71537988 + L2 LINE L2 3255 3298 -15 778 274 225 18 chr13 48207334 48207976 -71536922 - L2 LINE L2 -2 3311 2454 1827 134 98 128 chr13 48207980 48208481 -71536417 - LTR21A LTR ERV1 -19 486 1 222 269 58 29 chr13 48208482 48208586 -71536312 - L2 LINE L2 -866 2448 2342 1239 188 188 0 chr13 48208673 48208934 -71535964 - MLT1F1 LTR MaLR -5 562 253 727 197 7 20 chr13 48208932 48209079 -71535819 - MLT1F1 LTR MaLR -418 149 5 * 340 200 306 12 chr13 48209967 48210037 -71534861 + L1ME4a LINE L1 5689 5737 -384 2321 104 0 0 chr13 48210037 48210336 -71534562 + AluSx SINE Alu 1 299 -13 340 200 306 12 chr13 48210336 48210425 -71534473 + L1ME4a LINE L1 5737 5895 -226 2014 92 3 73 chr13 48212616 48212932 -71531966 - AluSg SINE Alu -16 294 1 2318 87 0 0 chr13 48213348 48213637 -71531261 - AluY SINE Alu -22 289 1 759 208 101 0 chr13 48213828 48213987 -71530911 + FAM SINE Alu 1 175 0 465 296 21 14 chr13 48215379 48215521 -71529377 - MIR SINE MIR -114 148 6 1786 176 0 7 chr13 48215758 48216048 -71528850 - AluJb SINE Alu -24 288 1 1743 160 17 7 chr13 48216725 48217013 -71527885 - AluJb SINE Alu -21 291 1 2122 129 3 7 chr13 48217089 48217398 -71527500 + AluSx SINE Alu 1 308 -4 1875 137 21 7 chr13 48217430 48217715 -71527183 + AluSx SINE Alu 1 289 -23 25 65 0 0 chr13 48218311 48218357 -71526541 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr13 48218931 48218961 -71525937 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr13 48219120 48219166 -71525732 + AT_rich Low_complexity Low_complexity 1 46 0 1883 133 0 61 chr13 48219230 48219560 -71525338 + AluJb SINE Alu 1 310 -2 27 0 0 0 chr13 48219944 48219971 -71524927 + AT_rich Low_complexity Low_complexity 1 27 0 856 144 0 0 chr13 48222101 48222226 -71522672 + FLAM_C SINE Alu 1 125 -18 1682 180 0 3 chr13 48222478 48222773 -71522125 - AluJb SINE Alu -18 294 1 2312 77 10 3 chr13 48222780 48223077 -71521821 - AluSc SINE Alu -10 299 1 194 224 0 41 chr13 48223113 48223162 -71521736 + L2 LINE L2 3150 3196 -76 949 217 136 31 chr13 48226173 48226431 -71518467 + AluJo SINE Alu 2 286 -16 863 248 202 35 chr13 48226918 48227533 -71517365 - L2 LINE L2 0 3313 2611 1227 137 66 22 chr13 48228885 48229111 -71515787 + MER46A DNA MER2_type 1 236 0 245 313 12 38 chr13 48229472 48229552 -71515346 + MIR SINE MIR 71 148 -60 351 296 0 10 chr13 48229591 48229689 -71515209 - MIR SINE MIR -17 245 149 863 78 70 0 chr13 48229792 48229920 -71514978 - MER85 DNA T2_type -2 137 1 217 300 30 10 chr13 48231655 48231755 -71513143 + (TA)n Simple_repeat Simple_repeat 1 102 0 276 135 0 0 chr13 48233541 48233593 -71511305 + L1MB4 LINE L1 6129 6180 0 1631 140 4 4 chr13 48234528 48234764 -71510134 + AluSq SINE Alu 1 236 -77 28 29 0 0 chr13 48234764 48234799 -71510099 + AT_rich Low_complexity Low_complexity 1 35 0 2425 93 0 0 chr13 48236124 48236425 -71508473 + AluSg SINE Alu 1 301 -9 305 311 75 9 chr13 48236899 48237060 -71507838 - MIR SINE MIR -36 172 1 208 267 0 0 chr13 48237136 48237181 -71507717 - L2 LINE L2 -18 3295 3251 1461 177 100 3 chr13 48237447 48237747 -71507151 + L1MB5 LINE L1 5839 6167 -7 748 130 0 8 chr13 48238908 48239031 -71505867 + FLAM_C SINE Alu 1 122 -21 2818 3 0 0 chr13 48239126 48239428 -71505470 - AluYa5 SINE Alu -9 302 1 652 233 138 24 chr13 48239598 48239808 -71505090 + MIR SINE MIR 8 241 -21 561 217 63 68 chr13 48240372 48240579 -71504319 - L2 LINE L2 0 3313 3108 240 164 16 16 chr13 48241195 48241256 -71503642 - L2 LINE L2 -1484 1830 1770 946 267 196 16 chr13 48241256 48242068 -71502830 - L2 LINE L2 -1652 1662 705 233 231 265 0 chr13 48242183 48242330 -71502568 - L2 LINE L2 -2820 494 309 1974 121 19 7 chr13 48242780 48243087 -71501811 + AluJb SINE Alu 2 312 0 252 226 85 19 chr13 48243147 48243253 -71501645 - MIR SINE MIR -123 139 27 27 0 0 0 chr13 48243554 48243581 -71501317 + GC_rich Low_complexity Low_complexity 1 27 0 265 315 45 0 chr13 48246904 48246993 -71497905 + MER91C DNA MER1_type 40 132 -8 2029 157 0 0 chr13 48247954 48248254 -71496644 - AluJo SINE Alu -12 300 1 516 261 78 32 chr13 48248459 48248677 -71496221 - MER112 DNA MER1_type -25 235 8 215 176 0 78 chr13 48248975 48249026 -71495872 - L2 LINE L2 -1 3271 3225 1647 171 16 40 chr13 48249437 48249741 -71495157 - AluJb SINE Alu -15 297 1 870 161 0 0 chr13 48250090 48250239 -71494659 - MER5A DNA MER1_type 0 189 41 1053 205 11 0 chr13 48250239 48250424 -71494474 - Tigger7 DNA MER2_type -545 188 2 2067 143 3 7 chr13 48250515 48250816 -71494082 - AluJb SINE Alu -7 305 6 775 179 92 0 chr13 48251011 48251184 -71493714 - MER5A DNA MER1_type 0 189 1 241 120 220 70 chr13 48251419 48251519 -71493379 + MER53 DNA DNA 1 115 -74 1312 197 4 20 chr13 48251522 48251776 -71493122 + AluJo SINE Alu 1 250 -62 360 188 35 0 chr13 48251797 48251882 -71493016 - MER53 DNA DNA -101 88 1 2060 129 0 3 chr13 48252452 48252747 -71492151 - AluJb SINE Alu -13 299 6 776 195 12 30 chr13 48253418 48253587 -71491311 + FRAM SINE Alu 1 166 0 1923 100 7 54 chr13 48253747 48254026 -71490872 + AluSx SINE Alu 21 286 -26 1815 136 0 11 chr13 48254237 48254510 -71490388 + AluJo SINE Alu 38 307 -5 240 275 38 12 chr13 48254588 48254668 -71490230 + MIR3 SINE MIR 99 180 -28 2086 152 3 0 chr13 48254744 48255046 -71489852 + AluJb SINE Alu 1 303 -9 3205 125 39 34 chr13 48255376 48255600 -71489298 - L1MA8 LINE L1 -6 6285 6064 1642 176 48 7 chr13 48255600 48255890 -71489008 - AluJb SINE Alu -10 302 1 3205 125 39 34 chr13 48255890 48256163 -71488735 - L1MA8 LINE L1 -227 6064 5782 228 67 0 0 chr13 48256163 48256193 -71488705 + (TATG)n Simple_repeat Simple_repeat 2 31 0 3205 125 39 34 chr13 48256193 48256260 -71488638 - L1MA8 LINE L1 -509 5782 5717 1993 97 0 0 chr13 48256812 48257069 -71487829 - AluSc SINE Alu -4 305 49 679 178 16 0 chr13 48258388 48258517 -71486381 + FLAM_C SINE Alu 2 132 -1 350 184 0 11 chr13 48258531 48258618 -71486280 + G-rich Low_complexity Low_complexity 3 88 0 2211 177 100 93 chr13 48259063 48259785 -71485113 - LTR8A LTR ERV1 0 727 1 2064 136 10 10 chr13 48260402 48260697 -71484201 - AluSg SINE Alu -15 295 1 619 190 10 2 chr13 48260871 48261019 -71483879 + L1MC1 LINE L1 5384 5532 -801 3483 103 33 48 chr13 48261019 48261641 -71483257 - MER4B LTR ERV1 0 779 1 4925 112 18 42 chr13 48261641 48262032 -71482866 + L1MC1 LINE L1 5529 5928 -405 2066 151 65 45 chr13 48262032 48262128 -71482770 - LTR47A LTR ERVL 0 452 359 207 0 0 0 chr13 48262128 48262151 -71482747 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2066 151 65 45 chr13 48262151 48262497 -71482401 - LTR47A LTR ERVL -93 359 1 4925 112 18 42 chr13 48262497 48262930 -71481968 + L1MC1 LINE L1 5928 6333 0 418 203 50 66 chr13 48262930 48263112 -71481786 + LTR37B LTR ERV1 216 394 -74 788 192 58 0 chr13 48263121 48263277 -71481621 + MER58B DNA MER1_type 175 339 -2 410 260 10 0 chr13 48263481 48263581 -71481317 + MER5A DNA MER1_type 89 189 0 439 245 0 0 chr13 48263614 48263712 -71481186 - MER5A DNA MER1_type -80 109 12 360 202 36 0 chr13 48263702 48263786 -71481112 + MIR SINE MIR 117 203 -59 * 538 283 85 5 chr13 48263772 48263984 -71480914 + MIR SINE MIR 34 262 0 1749 193 0 7 chr13 48264114 48264419 -71480479 - AluJo SINE Alu -9 303 1 1072 116 35 86 chr13 48264982 48265060 -71479838 + LTR26E LTR ERV1 1 81 -541 2141 103 3 13 chr13 48265060 48265362 -71479536 + AluSx SINE Alu 1 299 -13 2022 148 0 13 chr13 48265371 48265674 -71479224 + AluSx SINE Alu 4 302 -10 1072 116 35 86 chr13 48265674 48265783 -71479115 + LTR26E LTR ERV1 89 188 -434 1820 190 85 124 chr13 48265784 48266559 -71478339 + LTR1B LTR ERV1 1 745 -81 567 240 8 8 chr13 48266638 48266759 -71478139 + LTR28 LTR ERV1 900 1020 0 1977 163 70 0 chr13 48266766 48267121 -71477777 + LTR26E LTR ERV1 195 574 -48 245 254 0 0 chr13 48267494 48267553 -71477345 + CT-rich Low_complexity Low_complexity 4 62 0 400 212 195 0 chr13 48267724 48267841 -71477057 + MLT1I LTR MaLR 233 372 -37 662 102 10 10 chr13 48267841 48267939 -71476959 + MER4A LTR ERV1 1 98 -566 1918 124 9 22 chr13 48267939 48268288 -71476610 + MER4A LTR ERV1 262 664 0 283 184 220 55 chr13 48268568 48268677 -71476221 + L1MEd LINE L1 12 138 -5981 247 250 17 0 chr13 48268816 48268876 -71476022 + (TA)n Simple_repeat Simple_repeat 1 61 0 4055 212 64 31 chr13 48268877 48269449 -71475449 - L1MD2 LINE L1 -19 6340 5788 2377 93 0 3 chr13 48269449 48269751 -71475147 - AluSg SINE Alu -9 301 1 4055 212 64 31 chr13 48269751 48270286 -71474612 - L1MD2 LINE L1 -571 5788 5198 425 237 86 20 chr13 48270427 48270579 -71474319 + L1MEd LINE L1 985 1146 -4973 1179 150 45 20 chr13 48270590 48270790 -71474108 - MER3 DNA MER1_type -4 205 1 253 242 74 21 chr13 48270792 48270887 -71474011 + L1MEd LINE L1 2714 2813 -3316 2074 124 10 7 chr13 48272903 48273194 -71471704 + AluSx SINE Alu 1 292 -20 236 325 0 0 chr13 48273909 48273992 -71470906 - L2 LINE L2 -213 3059 2977 242 29 29 0 chr13 48274482 48274517 -71470381 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2250 89 48 0 chr13 48274579 48274872 -71470026 + AluSc SINE Alu 1 307 -2 839 238 66 16 chr13 48276891 48277135 -71467763 + MIR SINE MIR 7 262 0 216 67 0 0 chr13 48277147 48277177 -71467721 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 750 154 0 0 chr13 48277180 48277297 -71467601 - FLAM_C SINE Alu -25 118 2 637 235 186 5 chr13 48277370 48277591 -71467307 + MIR SINE MIR 2 262 0 2466 84 0 0 chr13 48277856 48278152 -71466746 - AluSg SINE Alu -14 296 1 226 269 104 0 chr13 48278258 48278325 -71466573 + L2 LINE L2 3240 3313 0 2042 203 51 26 chr13 48278397 48278890 -71466008 - MLT1D LTR MaLR 0 505 1 264 351 52 6 chr13 48278897 48279071 -71465827 + L2 LINE L2 711 892 -2422 2099 211 35 18 chr13 48279618 48280073 -71464825 + LTR40c LTR ERVL 1 463 -2 210 378 0 0 chr13 48280138 48280220 -71464678 - MER5B DNA MER1_type -76 102 21 2143 66 37 0 chr13 48280940 48281212 -71463686 + AluY SINE Alu 1 282 -29 231 36 0 0 chr13 48281212 48281240 -71463658 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 321 120 0 0 chr13 48281240 48281290 -71463608 + Alu SINE Alu 251 300 -1 234 306 65 9 chr13 48282311 48282419 -71462479 + MIR SINE MIR 34 147 -61 1673 196 14 0 chr13 48283024 48283320 -71461578 + AluJo SINE Alu 5 304 -8 1112 163 0 0 chr13 48283398 48283564 -71461334 + FRAM SINE Alu 1 165 -11 560 290 125 17 chr13 48283671 48283968 -71460930 - MLT1J2 LTR MaLR 0 450 122 5250 175 111 13 chr13 48285533 48285612 -71459286 + Charlie1a DNA MER1_type 1 71 -2690 1819 171 0 16 chr13 48285612 48285917 -71458981 + AluJb SINE Alu 1 300 -12 5250 175 111 13 chr13 48285917 48285976 -71458922 + Charlie1a DNA MER1_type 71 123 -2638 2314 112 3 0 chr13 48285976 48286279 -71458619 - AluSg SINE Alu -6 304 1 5250 175 111 13 chr13 48286279 48287201 -71457697 + Charlie1a DNA MER1_type 123 1166 -289 1452 196 17 17 chr13 48287891 48288187 -71456711 + AluJo SINE Alu 1 296 -16 848 225 21 38 chr13 48288260 48288496 -71456402 - MIR SINE MIR -30 232 1 1361 128 56 7 chr13 48288978 48289266 -71455632 + Charlie1a DNA MER1_type 1154 1455 0 443 236 86 93 chr13 48290019 48290299 -71454599 - L1ME4a LINE L1 -248 5873 5596 1628 194 56 0 chr13 48290478 48290797 -71454101 - MER58B DNA MER1_type -1 340 4 1705 179 19 32 chr13 48291830 48292138 -71452760 + AluJo SINE Alu 1 304 -8 212 292 44 31 chr13 48292807 48292917 -71451981 + MER5A DNA MER1_type 65 177 -1 1080 189 141 42 chr13 48293611 48293674 -71451224 - MER46C DNA MER2_type -2 336 281 1707 161 24 7 chr13 48293674 48293965 -71450933 - AluJb SINE Alu -12 300 5 1080 189 141 42 chr13 48293965 48294207 -71450691 - MER46C DNA MER2_type -57 281 1 267 210 12 37 chr13 48294226 48294307 -71450591 - MIR SINE MIR 0 262 184 474 128 26 0 chr13 48294583 48294661 -71450237 + AluJ/FLAM SINE Alu 1 80 -232 190 297 10 79 chr13 48294926 48295027 -71449871 - MER5A DNA MER1_type 0 189 96 27 0 0 0 chr13 48295057 48295084 -71449814 + AT_rich Low_complexity Low_complexity 1 27 0 373 273 48 48 chr13 48295916 48296081 -71448817 + L2 LINE L2 3130 3294 -19 1780 98 0 0 chr13 48296099 48296324 -71448574 - AluSg/x SINE Alu -2 308 84 1998 62 4 35 chr13 48297878 48298135 -71446763 + AluY SINE Alu 46 294 -17 277 254 0 70 chr13 48298213 48298284 -71446614 - L2 LINE L2 -3 3269 3204 2084 153 0 0 chr13 48298536 48298837 -71446061 - AluSx SINE Alu -11 301 1 22 35 0 0 chr13 48298846 48298875 -71446023 + AT_rich Low_complexity Low_complexity 1 29 0 193 335 13 83 chr13 48298989 48299080 -71445818 - L2 LINE L2 -480 2834 2738 694 171 269 45 chr13 48299080 48299141 -71445757 - MER33 DNA MER1_type -2261 324 278 342 0 0 0 chr13 48299141 48299179 -71445719 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 630 0 0 0 chr13 48299178 48299248 -71445650 + (GA)n Simple_repeat Simple_repeat 2 71 0 694 171 269 45 chr13 48299179 48299248 -71445650 - MER33 DNA MER1_type -2307 278 226 2073 118 0 0 chr13 48299248 48299518 -71445380 - AluSc SINE Alu -39 270 1 694 171 269 45 chr13 48299518 48299719 -71445179 - MER33 DNA MER1_type -2359 226 2 193 335 13 83 chr13 48299719 48299857 -71445041 - L2 LINE L2 -576 2738 2621 329 243 48 29 chr13 48300206 48300309 -71444589 + L2 LINE L2 3168 3272 -41 551 265 46 26 chr13 48300430 48300634 -71444264 + MIR SINE MIR 3 208 -54 1337 176 5 0 chr13 48300641 48300862 -71444036 + AluJb SINE Alu 1 222 -90 207 0 0 0 chr13 48300886 48300909 -71443989 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 580 179 21 132 chr13 48302321 48302511 -71442387 + MER7A DNA MER2_type 1 167 -179 298 356 69 5 chr13 48302783 48302971 -71441927 - L2 LINE L2 -222 3050 2851 194 273 0 55 chr13 48303471 48303526 -71441372 - L2 LINE L2 -2 3270 3219 2234 78 0 3 chr13 48304257 48304585 -71440313 - AluSx SINE Alu 0 327 1 2110 125 34 6 chr13 48304811 48305139 -71439759 - MER1B DNA MER1_type 0 337 1 1877 88 7 81 chr13 48305233 48305569 -71439329 - AluSq SINE Alu 0 313 1 814 197 56 11 chr13 48305692 48305870 -71439028 - AluSg/x SINE Alu 0 310 125 444 256 118 36 chr13 48305870 48306114 -71438784 - L1MC4 LINE L1 -1 7994 7688 1272 114 116 32 chr13 48306143 48306403 -71438495 + MER1B DNA MER1_type 97 338 -1 26 30 0 0 chr13 48306638 48306671 -71438227 + AT_rich Low_complexity Low_complexity 1 33 0 231 220 0 0 chr13 48307686 48307745 -71437153 - L1ME4a LINE L1 -3 6118 6060 398 288 59 12 chr13 48307792 48307962 -71436936 - L1ME4a LINE L1 -263 5858 5681 189 74 0 0 chr13 48308518 48308545 -71436353 + (ATATG)n Simple_repeat Simple_repeat 4 30 0 2457 78 10 0 chr13 48308618 48308926 -71435972 - AluY SINE Alu 0 311 1 215 319 32 21 chr13 48309038 48309132 -71435766 + MIR SINE MIR 50 144 -64 2240 123 0 16 chr13 48309248 48309565 -71435333 - AluSx SINE Alu 0 312 1 2145 137 0 0 chr13 48310360 48310659 -71434239 + AluSx SINE Alu 1 299 -13 474 75 0 0 chr13 48310918 48310985 -71433913 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 305 295 58 64 chr13 48311060 48311141 -71433757 + L1ME3A LINE L1 5100 5180 -966 1918 176 0 3 chr13 48311141 48311442 -71433456 + AluJb SINE Alu 1 300 -12 305 295 58 64 chr13 48311442 48311533 -71433365 + L1ME3A LINE L1 5180 5271 -875 347 241 45 38 chr13 48311584 48311717 -71433181 + L1ME3A LINE L1 6001 6134 -36 1141 182 29 10 chr13 48311811 48312020 -71432878 - L1MB7 LINE L1 -77 6107 5895 303 195 0 0 chr13 48312486 48312567 -71432331 + L1ME3A LINE L1 5372 5449 -733 2351 104 3 0 chr13 48312572 48312879 -71432019 - AluSx SINE Alu -4 308 1 661 262 65 31 chr13 48312896 48313186 -71431712 + L1ME3A LINE L1 5639 5938 -232 1739 176 3 16 chr13 48313215 48313528 -71431370 + AluJo SINE Alu 1 309 -3 458 257 0 0 chr13 48314048 48314153 -71430745 + L1MA10 LINE L1 6166 6270 -64 700 175 0 8 chr13 48314165 48314285 -71430613 + FLAM_C SINE Alu 13 131 -12 1779 156 19 36 chr13 48314615 48314923 -71429975 - AluJo SINE Alu -9 303 1 513 162 110 37 chr13 48316926 48316977 -71427921 + L2 LINE L2 3168 3214 -99 198 0 0 0 chr13 48316977 48316999 -71427899 + (TG)n Simple_repeat Simple_repeat 2 23 0 513 162 110 37 chr13 48316999 48317083 -71427815 + L2 LINE L2 3214 3313 0 205 367 79 22 chr13 48317052 48317191 -71427707 - L2 LINE L2 -7 3265 3119 * 2013 135 0 47 chr13 48317207 48317525 -71427373 + AluSx SINE Alu 1 303 -9 511 233 120 0 chr13 48317526 48317676 -71427222 + MER5A DNA MER1_type 20 187 -2 216 0 0 0 chr13 48318041 48318065 -71426833 + (A)n Simple_repeat Simple_repeat 1 24 0 2037 103 0 39 chr13 48318212 48318523 -71426375 - AluJo SINE Alu -13 299 1 540 196 29 36 chr13 48319254 48319392 -71425506 - L2 LINE L2 -4 3268 3132 1984 111 9 70 chr13 48319639 48319954 -71424944 + AluSg SINE Alu 1 296 -14 1694 141 0 15 chr13 48320143 48320406 -71424492 + AluJo SINE Alu 38 296 -16 661 211 144 107 chr13 48320645 48320991 -71423907 - MLT1H1 LTR MaLR -7 548 190 180 322 0 44 chr13 48322661 48322751 -71422147 - L3 LINE CR1 -74 1503 1418 391 293 153 0 chr13 48322996 48323146 -71421752 - MIR SINE MIR -70 192 20 2049 152 0 3 chr13 48323171 48323473 -71421425 - AluJb SINE Alu -10 302 2 248 276 58 23 chr13 48323641 48323728 -71421170 + MLT1H1 LTR MaLR 100 189 -366 251 235 44 96 chr13 48323747 48323883 -71421015 + MLT1H LTR MaLR 421 549 0 373 310 58 26 chr13 48324522 48324748 -71420150 - L3 LINE CR1 -721 856 624 1808 138 48 17 chr13 48325064 48325353 -71419545 - AluJb SINE Alu -14 298 1 186 167 0 0 chr13 48325566 48325602 -71419296 + GA-rich Low_complexity Low_complexity 2 37 0 395 241 37 9 chr13 48325695 48325803 -71419095 - L2 LINE L2 -23 3290 3180 317 294 139 28 chr13 48326010 48326932 -71417966 - L2 LINE L2 -495 2819 1721 231 293 24 0 chr13 48327904 48327986 -71416912 + L2 LINE L2 2228 2311 -1003 393 234 95 32 chr13 48328179 48328270 -71416628 + MIR SINE MIR 48 155 -107 1911 177 88 24 chr13 48328270 48328688 -71416210 + MER65A LTR ERV1 1 445 0 393 234 95 32 chr13 48328688 48328754 -71416144 + MIR SINE MIR 155 215 -47 468 153 0 0 chr13 48330479 48330551 -71414347 - FLAM SINE Alu -15 128 57 308 167 0 0 chr13 48330595 48330643 -71414255 - Alu SINE Alu -244 56 9 296 284 71 31 chr13 48330949 48331076 -71413822 + MIR SINE MIR 15 146 -116 7154 125 40 30 chr13 48334611 48335350 -71409548 + Tigger3b DNA MER2_type 1 758 -2270 1745 169 3 7 chr13 48335350 48335646 -71409252 - AluJo SINE Alu -17 295 1 7154 125 40 30 chr13 48335646 48336125 -71408773 + Tigger3b DNA MER2_type 758 1231 0 2632 54 0 0 chr13 48336651 48336949 -71407949 + AluY SINE Alu 1 298 -13 262 285 23 54 chr13 48336959 48337089 -71407809 - MER5A DNA MER1_type -63 126 1 185 286 104 26 chr13 48337643 48337720 -71407178 + MIR SINE MIR 8 90 -172 264 284 101 18 chr13 48337994 48338163 -71406735 - MIR SINE MIR -48 214 32 * 695 268 16 49 chr13 48338111 48338354 -71406544 + MIR SINE MIR 6 240 -22 3588 200 60 19 chr13 48338896 48339057 -71405841 + L1MB5 LINE L1 2880 3033 -3113 2280 113 3 0 chr13 48339057 48339366 -71405532 + AluSg SINE Alu 1 310 0 3588 200 60 19 chr13 48339366 48340152 -71404746 + L1MB5 LINE L1 3033 3866 -2280 1970 169 102 32 chr13 48340156 48340588 -71404310 + MLT1C LTR MaLR 6 467 0 532 157 39 10 chr13 48340593 48340695 -71404203 + L1MB5 LINE L1 3860 3964 -2182 1961 163 0 0 chr13 48340699 48341006 -71403892 + AluJb SINE Alu 1 307 -5 1867 151 41 60 chr13 48341015 48341630 -71403268 + L1MB5 LINE L1 4918 5528 -652 1575 181 53 20 chr13 48341631 48341930 -71402968 + AluJb SINE Alu 1 309 -3 548 80 5 120 chr13 48341939 48342139 -71402759 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 3261 146 40 35 chr13 48342142 48342422 -71402476 + L1MB5 LINE L1 5535 5812 -362 2092 120 33 7 chr13 48342422 48342723 -71402175 + AluSx SINE Alu 1 309 -3 3261 146 40 35 chr13 48342723 48343071 -71401827 + L1MB5 LINE L1 5812 6166 -8 21 0 0 0 chr13 48343087 48343108 -71401790 + AT_rich Low_complexity Low_complexity 1 21 0 581 214 71 25 chr13 48344526 48344764 -71400134 - L1ME4a LINE L1 -7 6114 5866 394 279 88 7 chr13 48344831 48344967 -71399931 - MIR SINE MIR -12 250 104 1625 163 30 30 chr13 48345432 48345800 -71399098 - L1MB8 LINE L1 -6 6172 5805 215 302 23 0 chr13 48345805 48345891 -71399007 + MIR SINE MIR 166 253 -9 555 308 165 43 chr13 48346139 48346558 -71398340 - L3b LINE CR1 -9 1574 1105 558 180 168 12 chr13 48347262 48347423 -71397475 + MER53 DNA DNA 4 189 0 2284 110 0 16 chr13 48347481 48347798 -71397100 + AluSx SINE Alu 1 312 0 305 264 27 55 chr13 48347841 48347951 -71396947 - L2 LINE L2 -7 3306 3200 214 301 78 10 chr13 48348079 48348182 -71396716 + MIR SINE MIR 81 190 -72 2247 103 0 0 chr13 48348958 48349250 -71395648 + AluSp SINE Alu 1 292 -21 21 0 0 0 chr13 48349253 48349274 -71395624 + AT_rich Low_complexity Low_complexity 1 21 0 249 338 142 0 chr13 48349740 48349888 -71395010 - MIR3 SINE MIR -36 172 4 23 0 0 0 chr13 48350613 48350636 -71394262 + AT_rich Low_complexity Low_complexity 1 23 0 1985 152 0 0 chr13 48350757 48351053 -71393845 - AluSx SINE Alu -14 298 3 592 314 105 15 chr13 48351233 48351338 -71393560 - L1ME4a LINE L1 -319 5802 5708 709 177 125 31 chr13 48351338 48351530 -71393368 - MER6B DNA MER2_type 0 210 1 592 314 105 15 chr13 48351530 48351892 -71393006 - L1ME4a LINE L1 -413 5708 5293 584 304 73 30 chr13 48351914 48352008 -71392890 - L1ME4a LINE L1 -927 5219 5130 1501 196 28 14 chr13 48352008 48352294 -71392604 + AluJb SINE Alu 1 290 -22 584 304 73 30 chr13 48352294 48352830 -71392068 - L1ME4a LINE L1 -1016 5130 4562 567 222 9 0 chr13 48352875 48352983 -71391915 + MER21B LTR ERV1 329 437 -426 477 0 0 0 chr13 48352996 48353049 -71391849 + (TA)n Simple_repeat Simple_repeat 2 54 0 3501 135 27 15 chr13 48353220 48353822 -71391076 + LTR38B LTR ERV1 1 609 -1 1802 152 7 11 chr13 48353822 48354098 -71390800 + AluJo SINE Alu 27 301 -11 222 61 61 0 chr13 48354119 48354168 -71390730 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 501 312 38 38 chr13 48354211 48354474 -71390424 + L1ME4a LINE L1 5630 5892 -229 2094 120 3 10 chr13 48354635 48354943 -71389955 + AluSg SINE Alu 1 306 -4 24 0 0 0 chr13 48354991 48355015 -71389883 + AT_rich Low_complexity Low_complexity 1 24 0 469 344 134 30 chr13 48356694 48357012 -71387886 + L2 LINE L2 1925 2208 -1106 2523 74 0 3 chr13 48357012 48357323 -71387575 - AluY SINE Alu -1 310 1 469 344 134 30 chr13 48357323 48357711 -71387187 + L2 LINE L2 2208 2705 -609 857 214 105 68 chr13 48358209 48358620 -71386278 - MER67C LTR ERV1 -139 571 146 397 284 45 30 chr13 48361121 48361184 -71383714 + L2 LINE L2 3008 3069 -244 351 0 0 0 chr13 48361184 48361223 -71383675 + (CA)n Simple_repeat Simple_repeat 1 39 0 397 284 45 30 chr13 48361223 48361360 -71383538 + L2 LINE L2 3069 3211 -102 4443 21 0 0 chr13 48361597 48362112 -71382786 + L1PA3 LINE L1 5641 6155 0 2532 75 0 0 chr13 48362573 48362878 -71382020 - AluSq SINE Alu -8 305 1 195 265 20 0 chr13 48363296 48363345 -71381553 - MIR SINE MIR -110 152 103 1953 104 0 0 chr13 48364691 48364950 -71379948 - AluSg1 SINE Alu -2 307 49 1927 117 31 9 chr13 48365003 48365329 -71379569 + L1MA4 LINE L1 5963 6295 -5 32 0 0 0 chr13 48365474 48365506 -71379392 + AT_rich Low_complexity Low_complexity 1 32 0 207 279 16 16 chr13 48366001 48366062 -71378836 - L2 LINE L2 -32 3240 3180 1283 105 42 155 chr13 48366158 48366519 -71378379 + MER33 DNA MER1_type 5 324 0 465 226 250 43 chr13 48366710 48366918 -71377980 - MIR SINE MIR -2 260 10 446 124 58 0 chr13 48367006 48367127 -71377771 + GA-rich Low_complexity Low_complexity 2 129 0 2093 71 4 8 chr13 48367969 48368236 -71376662 - AluY SINE Alu -12 299 34 23 54 0 0 chr13 48368618 48368655 -71376243 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr13 48368738 48368768 -71376130 + AT_rich Low_complexity Low_complexity 1 30 0 388 61 0 30 chr13 48369506 48369572 -71375326 + (TA)n Simple_repeat Simple_repeat 2 65 0 224 256 26 13 chr13 48369673 48369751 -71375147 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 428 282 90 27 chr13 48370096 48370284 -71374614 - MIR SINE MIR -12 250 51 207 182 0 0 chr13 48371303 48371336 -71373562 + polypyrimidine Low_complexity Low_complexity 2 34 0 1843 163 0 3 chr13 48371732 48372020 -71372878 + AluSx SINE Alu 1 287 -25 22 0 0 0 chr13 48372741 48372763 -71372135 + AT_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr13 48372899 48372929 -71371969 + (TA)n Simple_repeat Simple_repeat 2 31 0 406 305 66 73 chr13 48372972 48373411 -71371487 + MARNA DNA Mariner 125 560 -26 646 169 21 42 chr13 48373450 48373592 -71371306 + L1MB2 LINE L1 5953 6091 -80 233 245 75 0 chr13 48374479 48374532 -71370366 - L2 LINE L2 -4 3309 3253 327 25 0 0 chr13 48374710 48374750 -71370148 + (TG)n Simple_repeat Simple_repeat 1 40 0 1603 290 57 46 chr13 48374786 48375565 -71369333 - L2 LINE L2 -340 2974 2188 717 163 57 0 chr13 48375923 48376046 -71368852 + AluJb SINE Alu 5 134 -178 694 183 9 0 chr13 48376058 48376173 -71368725 + AluJb SINE Alu 103 218 -94 185 0 0 39 chr13 48376189 48376215 -71368683 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 325 284 49 10 chr13 48376965 48377067 -71367831 + L2 LINE L2 2948 3053 -219 241 337 179 0 chr13 48377991 48378086 -71366812 + L2 LINE L2 3158 3269 -3 1848 178 0 20 chr13 48378541 48378844 -71366054 + AluJo SINE Alu 1 297 -15 843 204 85 27 chr13 48378857 48379117 -71365781 + L1MC5 LINE L1 6633 6907 -1054 222 174 0 0 chr13 48379201 48379247 -71365651 + (TA)n Simple_repeat Simple_repeat 1 46 0 479 263 21 44 chr13 48379305 48379574 -71365324 + L1MC5 LINE L1 7005 7256 -733 23 33 0 0 chr13 48379706 48379736 -71365162 + AT_rich Low_complexity Low_complexity 1 30 0 195 391 0 0 chr13 48379821 48379890 -71365008 - L3 LINE CR1 -1468 109 41 2094 94 52 3 chr13 48380230 48380516 -71364382 + AluSg SINE Alu 1 300 -10 770 262 57 13 chr13 48380632 48380861 -71364037 + MIR SINE MIR 12 250 -12 316 260 71 39 chr13 48380932 48381086 -71363812 + L1ME4a LINE L1 5962 6120 -1 274 309 59 33 chr13 48381222 48381416 -71363482 + L2 LINE L2 2724 2919 -353 238 246 45 36 chr13 48381505 48381615 -71363283 + MLT1J2 LTR MaLR 338 448 -2 547 207 138 69 chr13 48381646 48382026 -71362872 + HAL1 LINE L1 2027 2444 -63 2255 120 3 0 chr13 48382026 48382335 -71362563 + AluSx SINE Alu 1 310 -2 547 207 138 69 chr13 48382335 48382403 -71362495 + HAL1 LINE L1 2444 2506 -1 297 120 0 0 chr13 48383301 48383351 -71361547 + L1MB8 LINE L1 6108 6157 -21 2198 148 8 13 chr13 48384057 48384434 -71360464 + THE1C LTR MaLR 1 375 0 190 347 159 11 chr13 48384461 48384637 -71360261 + L2 LINE L2 2578 2779 -535 2325 112 0 0 chr13 48384645 48385041 -71359857 + AluSg SINE Alu 1 396 0 424 169 60 12 chr13 48385348 48385431 -71359467 - MIR SINE MIR -10 252 166 21 112 0 0 chr13 48385487 48385585 -71359313 + AT_rich Low_complexity Low_complexity 1 98 0 9274 113 16 1 chr13 48385629 48387156 -71357742 + L1M1 LINE L1 2060 3609 -3956 953 160 0 0 chr13 48387156 48387300 -71357598 + AluJb SINE Alu 169 312 0 1681 174 0 30 chr13 48387300 48387673 -71357225 + L1M1 LINE L1 3597 3958 -3607 454 204 92 0 chr13 48387674 48387772 -71357126 + L1M1 LINE L1 5484 5590 -1975 4370 140 14 11 chr13 48387823 48389813 -71355085 + L1MA2 LINE L1 4065 6304 0 1856 92 0 0 chr13 48389858 48390097 -71354801 + AluSq SINE Alu 67 305 -8 1846 149 47 0 chr13 48390182 48390457 -71354441 + AluSx SINE Alu 2 289 -23 711 139 26 80 chr13 48390486 48390637 -71354261 + FLAM_C SINE Alu 1 143 0 2040 114 34 3 chr13 48390641 48390999 -71353899 + L1MC/D LINE L1 5317 5685 -557 1942 142 0 45 chr13 48391082 48391391 -71353507 + AluJb SINE Alu 1 295 -17 191 176 0 0 chr13 48392171 48392205 -71352693 + L2 LINE L2 3280 3313 0 872 191 106 12 chr13 48392343 48392631 -71352267 + L1ME1 LINE L1 5190 5503 -743 1863 220 99 28 chr13 48392635 48393038 -71351860 + L1ME1 LINE L1 5619 6067 -99 2339 102 0 0 chr13 48393038 48393333 -71351565 - AluSg SINE Alu -15 295 1 1863 220 99 28 chr13 48393333 48393433 -71351465 + L1ME1 LINE L1 6067 6158 -8 33 0 0 0 chr13 48393702 48393735 -71351163 + AT_rich Low_complexity Low_complexity 1 33 0 2008 121 57 7 chr13 48394622 48394920 -71349978 - AluSq SINE Alu 0 313 1 1821 165 21 3 chr13 48395048 48395339 -71349559 - AluJb SINE Alu -16 296 1 2381 56 7 13 chr13 48396115 48396419 -71348479 - AluY SINE Alu -9 302 1 262 297 10 0 chr13 48396912 48397013 -71347885 - MARNA DNA Mariner -51 535 434 195 42 0 0 chr13 48397517 48397541 -71347357 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr13 48397766 48397796 -71347102 + AT_rich Low_complexity Low_complexity 1 30 0 434 241 178 29 chr13 48398623 48398797 -71346101 - MIR SINE MIR -58 204 5 2229 45 0 17 chr13 48398970 48399261 -71345637 + L1PA5 LINE L1 5869 6154 0 738 249 104 10 chr13 48399978 48400179 -71344719 + MIR SINE MIR 43 262 0 270 0 0 0 chr13 48400339 48400369 -71344529 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 724 144 68 8 chr13 48400718 48400836 -71344062 - LTR9B LTR ERV1 -432 212 88 5608 82 42 11 chr13 48400836 48401666 -71343232 + SVA Other Other 13 868 -518 185 376 0 0 chr13 48402455 48402564 -71342334 - MIR SINE MIR -134 128 20 811 222 64 5 chr13 48403101 48403304 -71341594 + MER20 DNA MER1_type 1 215 -4 609 257 47 34 chr13 48403382 48403583 -71341315 - MIR SINE MIR -14 248 44 267 193 0 0 chr13 48403732 48403820 -71341078 + (TG)n Simple_repeat Simple_repeat 1 88 0 3534 245 68 30 chr13 48404700 48406794 -71338104 + L1M4 LINE L1 795 3074 -3570 6882 53 2 32 chr13 48406901 48407818 -71337080 + SVA Other Other 497 1386 0 31 26 0 0 chr13 48407861 48407899 -71336999 + AT_rich Low_complexity Low_complexity 1 38 0 2273 95 7 0 chr13 48407943 48408237 -71336661 - AluY SINE Alu -15 296 1 1220 130 17 35 chr13 48408544 48408774 -71336124 + L1MB7 LINE L1 5940 6165 -19 22 0 0 0 chr13 48408970 48408992 -71335906 + AT_rich Low_complexity Low_complexity 1 22 0 2178 125 0 0 chr13 48409021 48409326 -71335572 - AluSq SINE Alu -8 305 1 260 230 40 0 chr13 48409497 48409571 -71335327 - L1ME3A LINE L1 -88 6082 6006 235 139 0 0 chr13 48409625 48409661 -71335237 - MIR SINE MIR -110 152 117 1285 300 42 9 chr13 48409664 48410208 -71334690 - L1ME3A LINE L1 -208 5962 5401 25 51 0 0 chr13 48411191 48411230 -71333668 + AT_rich Low_complexity Low_complexity 1 39 0 14401 115 43 40 chr13 48411657 48411826 -71333072 - Tigger1 DNA MER2_type -1 2417 2250 768 41 10 0 chr13 48411826 48411923 -71332975 + L1PA3 LINE L1 6056 6153 -2 14401 115 43 40 chr13 48411923 48414161 -71330737 - Tigger1 DNA MER2_type -168 2250 1 435 333 37 7 chr13 48414443 48414578 -71330320 - L2 LINE L2 0 3272 3134 199 369 12 24 chr13 48415157 48415241 -71329657 + MIR SINE MIR 69 151 -57 275 348 189 0 chr13 48416028 48416192 -71328706 - L2 LINE L2 0 3272 3078 1814 150 19 0 chr13 48417149 48417456 -71327442 + L1M2 LINE L1 5473 5785 -506 2038 130 3 0 chr13 48417456 48417748 -71327150 + AluSx SINE Alu 1 293 -19 378 318 7 7 chr13 48417813 48417964 -71326934 - L1ME LINE L1 -578 5584 5434 1187 168 5 0 chr13 48417964 48418149 -71326749 - AluJb SINE Alu -56 256 71 795 176 0 0 chr13 48418159 48418284 -71326614 - FLAM_C SINE Alu -8 125 1 813 181 27 13 chr13 48418359 48418508 -71326390 - FRAM SINE Alu -25 151 1 25 0 0 0 chr13 48418685 48418710 -71326188 + AT_rich Low_complexity Low_complexity 1 25 0 475 261 73 105 chr13 48418728 48419383 -71325515 + HAL1 LINE L1 999 1632 -875 367 264 123 75 chr13 48419840 48420045 -71324853 + L1ME4a LINE L1 2104 2329 -4067 216 0 0 0 chr13 48420045 48420069 -71324829 + (CA)n Simple_repeat Simple_repeat 1 24 0 367 264 123 75 chr13 48420069 48420155 -71324743 + L1ME4a LINE L1 2329 2409 -3987 2098 91 0 18 chr13 48420462 48420768 -71324130 + AluSg SINE Alu 9 309 0 349 337 183 5 chr13 48421086 48421457 -71323441 + L1ME4a LINE L1 4108 4544 -1671 254 247 146 19 chr13 48421563 48421721 -71323177 + HAL1b LINE L1 1164 1341 -7 303 284 234 12 chr13 48421803 48422060 -71322838 + L1ME4a LINE L1 4588 4901 -1314 22 0 0 0 chr13 48422204 48422226 -71322672 + AT_rich Low_complexity Low_complexity 1 22 0 595 245 132 34 chr13 48422509 48422774 -71322124 + L1ME4a LINE L1 5583 5873 -317 457 307 13 0 chr13 48422814 48422964 -71321934 + MER104 DNA Tc2 28 179 -1 322 225 23 54 chr13 48423111 48423240 -71321658 + L1ME4a LINE L1 6061 6185 -5 2358 89 7 0 chr13 48423326 48423629 -71321269 - AluSg SINE Alu -5 305 1 294 150 0 0 chr13 48424080 48424120 -71320778 + Alu SINE Alu 1 40 -268 653 94 0 31 chr13 48424120 48424216 -71320682 + AluJb SINE Alu 208 300 -12 2257 100 3 0 chr13 48424524 48424823 -71320075 + AluSx SINE Alu 1 300 -12 354 265 6 0 chr13 48424944 48425049 -71319849 + L1ME2 LINE L1 6054 6166 0 188 268 0 0 chr13 48426574 48426615 -71318283 - L2 LINE L2 -4 3309 3269 260 262 16 0 chr13 48427256 48427317 -71317581 - L2 LINE L2 -6 3307 3246 339 44 0 0 chr13 48428531 48428576 -71316322 + (CA)n Simple_repeat Simple_repeat 2 46 0 2020 230 27 6 chr13 48431271 48431784 -71313114 + L1MEc LINE L1 859 1382 -5339 475 143 13 0 chr13 48431787 48431864 -71313034 + LTR54 LTR ERV1 404 481 -29 244 313 6 32 chr13 48431876 48432060 -71312838 + L1MEc LINE L1 1322 1500 -5040 8595 122 24 39 chr13 48432102 48433582 -71311316 + L1M1 LINE L1 1587 3044 -4521 354 147 9 4 chr13 48433590 48433810 -71311088 + AluJo SINE Alu 1 300 0 434 136 12 0 chr13 48433812 48433893 -71311005 + GA-rich Low_complexity Low_complexity 3 84 0 2961 117 30 36 chr13 48433893 48434267 -71310631 + L1MA3 LINE L1 5780 6152 -153 2302 84 0 42 chr13 48434267 48434577 -71310321 - AluY SINE Alu -14 297 1 2961 117 30 36 chr13 48434577 48434730 -71310168 + L1MA3 LINE L1 6152 6304 -1 301 368 57 24 chr13 48434786 48434995 -71309903 - L1MC4a LINE L1 -1223 6585 6370 36 87 0 0 chr13 48435725 48435817 -71309081 + AT_rich Low_complexity Low_complexity 1 92 0 884 111 0 15 chr13 48435841 48435976 -71308922 + FLAM_C SINE Alu 1 133 0 190 357 142 37 chr13 48436273 48436649 -71308249 - L2 LINE L2 -790 2524 2084 1592 165 36 25 chr13 48436649 48436928 -71307970 + AluJb SINE Alu 1 282 -30 190 357 142 37 chr13 48436928 48437036 -71307862 - L2 LINE L2 -1230 2084 1989 778 127 22 30 chr13 48437890 48438024 -71306874 + FLAM_C SINE Alu 1 133 0 1978 154 7 3 chr13 48439224 48439530 -71305368 + AluSx SINE Alu 1 307 -5 2434 150 65 14 chr13 48439777 48440210 -71304688 + LTR32 LTR ERVL 15 469 -2 318 52 0 103 chr13 48440453 48440511 -71304387 - MADE1 DNA Mariner -28 52 1 2032 156 0 29 chr13 48440737 48441084 -71303814 - MER1B DNA MER1_type 0 337 1 261 0 0 0 chr13 48441203 48441232 -71303666 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 534 220 98 50 chr13 48442548 48442737 -71302161 + L1ME4a LINE L1 5694 5872 -249 22 35 0 0 chr13 48442737 48442766 -71302132 + AT_rich Low_complexity Low_complexity 1 29 0 534 220 98 50 chr13 48442766 48442935 -71301963 + L1ME4a LINE L1 5872 6098 -23 2009 135 0 22 chr13 48443010 48443328 -71301570 + AluJb SINE Alu 2 312 0 2230 107 0 20 chr13 48443332 48443632 -71301266 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr13 48443632 48443656 -71301242 + AT_rich Low_complexity Low_complexity 1 24 0 652 217 8 0 chr13 48443811 48443931 -71300967 + L2 LINE L2 3189 3309 -4 24 0 0 0 chr13 48443938 48443962 -71300936 + AT_rich Low_complexity Low_complexity 1 24 0 719 281 41 8 chr13 48444387 48444629 -71300269 + MER112 DNA MER1_type 6 255 -5 1064 224 54 12 chr13 48444684 48444925 -71299973 + MIR SINE MIR 12 262 0 467 234 43 14 chr13 48445284 48445425 -71299473 - L1MB7 LINE L1 0 6184 6040 3413 172 49 14 chr13 48445963 48446656 -71298242 + L1MB8 LINE L1 5452 6168 -10 1912 136 30 7 chr13 48446663 48446958 -71297940 - AluSx SINE Alu -10 302 1 2173 96 3 0 chr13 48447073 48447355 -71297543 - AluSx SINE Alu -19 293 11 1247 182 0 22 chr13 48447477 48447702 -71297196 + AluJb SINE Alu 85 304 -8 392 242 36 129 chr13 48448510 48448704 -71296194 + MLT1J LTR MaLR 1 176 -335 261 196 71 0 chr13 48448712 48448768 -71296130 + L1MDa LINE L1 40 99 -6441 3290 202 63 96 chr13 48449095 48450190 -71294708 + L1MDa LINE L1 89 1147 -5393 2019 141 3 3 chr13 48450388 48450686 -71294212 + AluSx SINE Alu 1 298 -14 670 175 18 0 chr13 48450715 48450829 -71294069 - FLAM_A SINE Alu -11 131 16 812 236 39 0 chr13 48451226 48451408 -71293490 - MER5A DNA MER1_type 0 189 1 764 125 15 29 chr13 48451533 48451669 -71293229 + AluJb SINE Alu 1 134 -178 194 217 87 0 chr13 48451808 48451854 -71293044 - L2 LINE L2 0 3313 3264 3465 154 119 14 chr13 48452094 48452815 -71292083 + L1MC3 LINE L1 6987 7783 -2 404 138 0 0 chr13 48453675 48453733 -71291165 + MER58 DNA MER1_type 2363 2420 0 453 297 46 15 chr13 48454055 48454250 -71290648 - MLT1A1-int LTR MaLR -478 893 693 270 130 0 0 chr13 48454481 48454527 -71290371 + LTR49 LTR ERV1 2 47 -548 * 704 180 86 54 chr13 48454514 48454527 -71290371 + MER34B LTR ERV1 337 348 -217 2376 65 3 0 chr13 48454527 48454818 -71290080 - AluY SINE Alu -19 292 1 704 180 86 54 chr13 48454818 48455026 -71289872 + MER34B LTR ERV1 348 565 0 503 313 67 17 chr13 48455053 48455350 -71289548 - MLT1A1-int LTR MaLR -765 606 295 1725 165 4 0 chr13 48455525 48455791 -71289107 + AluJb SINE Alu 25 291 -21 2024 177 11 3 chr13 48455805 48456156 -71288742 - MLT1A1 LTR MaLR 0 365 12 1278 222 214 39 chr13 48456190 48456649 -71288249 - MLT1F LTR MaLR -3 539 1 193 247 0 136 chr13 48457160 48457241 -71287657 - MIR SINE MIR -73 189 120 1269 219 12 0 chr13 48457243 48457485 -71287413 - AluJo SINE Alu -66 246 2 344 334 58 30 chr13 48457516 48457911 -71286987 - L1ME LINE L1 -338 5783 5378 790 239 163 35 chr13 48459103 48459471 -71285427 - L1ME1 LINE L1 -4 6162 5748 * 1082 194 51 77 chr13 48459469 48459518 -71285380 + L1ME2 LINE L1 5559 5608 -556 2226 126 0 0 chr13 48459518 48459828 -71285070 + AluSx SINE Alu 1 310 -2 1082 194 51 77 chr13 48459828 48460128 -71284770 + L1ME2 LINE L1 5608 5899 -265 1569 165 73 0 chr13 48460269 48460529 -71284369 - AluJb SINE Alu -33 279 1 629 321 37 47 chr13 48460530 48460932 -71283966 - L1MEd LINE L1 -5286 833 436 548 308 19 10 chr13 48461056 48461264 -71283634 - L1MEd LINE L1 -5899 220 11 492 310 54 10 chr13 48461273 48461476 -71283422 - L3 LINE CR1 -715 862 651 353 350 122 14 chr13 48462335 48462549 -71282349 + MIR SINE MIR 20 256 -6 712 184 28 14 chr13 48462671 48462812 -71282086 + FLAM_C SINE Alu 1 143 0 384 305 103 62 chr13 48462882 48463154 -71281744 - L1MC4a LINE L1 -1470 6338 6056 242 272 11 22 chr13 48463168 48463260 -71281638 - L1MC4a LINE L1 -1907 5901 5811 498 233 0 17 chr13 48463304 48463424 -71281474 - L1MC4a LINE L1 -2001 5807 5690 652 219 159 56 chr13 48463434 48463602 -71281296 - L1MC4a LINE L1 -2232 5576 5368 2079 134 0 0 chr13 48463602 48463892 -71281006 - AluSx SINE Alu -20 292 3 652 219 159 56 chr13 48463892 48463993 -71280905 - L1MC4a LINE L1 -2440 5368 5279 549 290 114 18 chr13 48464156 48464428 -71280470 - HAL1b LINE L1 -835 513 216 662 145 145 8 chr13 48464656 48464773 -71280125 - FLAM_A SINE Alu 0 133 1 876 134 0 0 chr13 48465037 48465164 -71279734 - FLAM_C SINE Alu -16 127 1 302 186 75 36 chr13 48465796 48465899 -71278999 + LTR48 LTR ERV1 486 751 -13 1794 142 0 53 chr13 48465928 48466230 -71278668 - AluJb SINE Alu -26 286 1 574 301 122 44 chr13 48466346 48466897 -71278001 - HAL1b LINE L1 -498 850 257 398 170 140 0 chr13 48466987 48467087 -71277811 - L1MB4 LINE L1 -2 6178 6065 4049 176 117 20 chr13 48467382 48468809 -71276089 - L1PA16 LINE L1 -1 6165 4352 402 21 0 0 chr13 48468809 48468856 -71276042 + (TG)n Simple_repeat Simple_repeat 1 47 0 4049 176 117 20 chr13 48468856 48469112 -71275786 - L1PA16 LINE L1 -1814 4352 4122 207 0 0 0 chr13 48469315 48469338 -71275560 + (TA)n Simple_repeat Simple_repeat 2 24 0 1673 197 28 0 chr13 48469386 48469675 -71275223 + AluJb SINE Alu 1 297 -15 336 217 130 36 chr13 48469685 48469823 -71275075 - L1MB4 LINE L1 -2193 5802 5652 488 235 45 8 chr13 48469841 48469973 -71274925 + L1ME LINE L1 5406 5542 -622 * 817 227 89 38 chr13 48469960 48470251 -71274647 - L1MB4 LINE L1 -511 5655 5350 457 228 131 67 chr13 48470242 48470510 -71274388 - L1ME4a LINE L1 -234 5887 5603 * 2311 94 16 0 chr13 48470603 48470911 -71273987 + AluSq SINE Alu 1 313 0 279 54 0 0 chr13 48471833 48471870 -71273028 + (CCA)n Simple_repeat Simple_repeat 1 37 0 344 284 219 22 chr13 48473191 48473374 -71271524 + MIR SINE MIR 21 239 -23 349 202 87 10 chr13 48473569 48473673 -71271225 + L1ME4a LINE L1 5992 6103 -18 2273 65 0 26 chr13 48473740 48474046 -71270852 + AluSx SINE Alu 1 298 -14 596 103 164 35 chr13 48474051 48474167 -71270731 + FLAM_C SINE Alu 1 131 -2 401 120 0 40 chr13 48474180 48474255 -71270643 + L1ME LINE L1 5533 5604 -517 23 33 0 0 chr13 48474272 48474302 -71270596 + AT_rich Low_complexity Low_complexity 1 30 0 663 276 93 16 chr13 48474852 48475289 -71269609 - L1ME LINE L1 -336 5768 5305 528 281 107 60 chr13 48475440 48476045 -71268853 - L1ME LINE L1 -1956 4173 3518 258 302 147 23 chr13 48476435 48477034 -71267864 - L1ME LINE L1 -3044 3085 2413 316 219 100 62 chr13 48477125 48477285 -71267613 - L1ME LINE L1 -3850 2279 2114 1961 125 0 0 chr13 48477356 48477620 -71267278 - AluSx SINE Alu -24 288 25 349 267 104 45 chr13 48478005 48478342 -71266556 - HAL1b LINE L1 -770 1653 457 235 261 120 28 chr13 48478388 48478530 -71266368 - L1ME LINE L1 -5070 1049 895 180 182 0 136 chr13 48478579 48478645 -71266253 - L3 LINE CR1 -294 1283 1227 271 238 100 81 chr13 48478871 48479031 -71265867 + L1ME LINE L1 5599 5761 -360 53 0 0 0 chr13 48479031 48479084 -71265814 + AT_rich Low_complexity Low_complexity 1 53 0 253 169 99 14 chr13 48479291 48479362 -71265536 - MIR SINE MIR -50 212 136 312 27 0 0 chr13 48479563 48479600 -71265298 + (TA)n Simple_repeat Simple_repeat 1 37 0 2051 97 12 66 chr13 48480204 48480524 -71264374 - AluSg SINE Alu -7 303 1 8342 164 23 47 chr13 48480524 48481388 -71263510 - L1MC3 LINE L1 -25 7760 6877 2199 125 0 3 chr13 48481388 48481691 -71263207 - AluSx SINE Alu -10 302 1 8342 164 23 47 chr13 48481691 48482236 -71262662 - L1MC3 LINE L1 -908 6877 6399 1369 185 70 21 chr13 48482236 48482522 -71262376 + AluSg SINE Alu 3 302 -8 8342 164 23 47 chr13 48482522 48482879 -71262019 - L1MC3 LINE L1 -1386 6399 6035 4168 191 73 22 chr13 48482948 48483954 -71260944 - Charlie1a DNA MER1_type 0 1455 399 933 205 44 57 chr13 48484019 48484248 -71260650 - Charlie1a DNA MER1_type -1219 236 11 1835 119 8 8 chr13 48485529 48485790 -71259108 - AluSx SINE Alu -12 300 40 1445 142 41 0 chr13 48486247 48486466 -71258432 - AluJo SINE Alu -82 230 3 297 289 0 48 chr13 48486491 48486574 -71258324 - MIR SINE MIR -172 90 12 228 291 197 33 chr13 48486579 48486935 -71257963 + L2 LINE L2 2005 2473 -841 185 343 152 39 chr13 48486936 48487114 -71257784 + L2 LINE L2 2678 2875 -439 21 0 0 0 chr13 48487507 48487528 -71257370 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 48487965 48487996 -71256902 + AT_rich Low_complexity Low_complexity 1 31 0 600 266 48 16 chr13 48488958 48489146 -71255752 + MIR SINE MIR 36 229 -33 2969 209 47 65 chr13 48489727 48490532 -71254366 - MER21B LTR ERV1 -54 809 19 274 238 60 24 chr13 48490557 48490641 -71254257 - MER21B LTR ERV1 -776 87 1 1989 116 7 23 chr13 48491099 48491402 -71253496 - AluSx SINE Alu -12 300 3 894 180 72 68 chr13 48491428 48491706 -71253192 - LTR4 LTR ERV1 0 596 318 512 249 19 80 chr13 48491898 48492111 -71252787 - LTR4 LTR ERV1 -396 200 1 534 241 87 34 chr13 48492237 48492444 -71252454 - LTR48B LTR ERV1 -304 340 123 1675 179 0 39 chr13 48492873 48493180 -71251718 + AluJo SINE Alu 1 295 -17 639 273 54 66 chr13 48493596 48493633 -71251265 - LTR24B LTR ERV1 -6 570 534 2300 106 0 0 chr13 48493633 48493926 -71250972 - AluSq SINE Alu -16 297 5 639 273 54 66 chr13 48493926 48494222 -71250676 - LTR24B LTR ERV1 -42 534 241 1481 198 10 26 chr13 48494245 48494548 -71250350 + AluJo SINE Alu 1 298 -14 419 181 9 57 chr13 48494607 48494712 -71250186 - LTR24B LTR ERV1 -365 100 1 1500 208 10 48 chr13 48494734 48495047 -71249851 - AluJo SINE Alu 0 302 2 23 33 0 0 chr13 48495176 48495206 -71249692 + AT_rich Low_complexity Low_complexity 1 30 0 1983 138 10 14 chr13 48495209 48495505 -71249393 + AluSx SINE Alu 1 295 -17 941 318 125 40 chr13 48497060 48497730 -71247168 - L3 LINE CR1 -673 904 178 23 33 0 0 chr13 48497773 48497803 -71247095 + AT_rich Low_complexity Low_complexity 1 30 0 1897 157 14 3 chr13 48498659 48498945 -71245953 + AluJb SINE Alu 1 289 -23 1691 161 9 40 chr13 48499049 48499371 -71245527 - AluJo SINE Alu 0 312 1 220 191 43 0 chr13 48499752 48499799 -71245099 + (CATA)n Simple_repeat Simple_repeat 4 52 0 180 0 0 0 chr13 48500008 48500028 -71244870 + (TA)n Simple_repeat Simple_repeat 2 21 0 933 125 0 22 chr13 48500029 48500165 -71244733 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr13 48500165 48500195 -71244703 + AT_rich Low_complexity Low_complexity 1 30 0 202 190 17 35 chr13 48500860 48500918 -71243980 + CT-rich Low_complexity Low_complexity 2 58 0 1959 160 0 3 chr13 48501362 48501668 -71243230 + AluJb SINE Alu 1 305 -7 2045 142 0 14 chr13 48502074 48502370 -71242528 + AluSx SINE Alu 1 292 -20 566 300 89 0 chr13 48502397 48502577 -71242321 + L1ME4a LINE L1 5447 5642 -2166 229 297 55 0 chr13 48502778 48502869 -71242029 + L1ME4a LINE L1 5741 5836 -1972 1228 186 5 9 chr13 48502869 48503079 -71241819 - MER3 DNA MER1_type 0 209 1 2526 94 51 14 chr13 48503089 48503440 -71241458 - THE1B LTR MaLR 0 364 1 1848 186 0 3 chr13 48503586 48503882 -71241016 - AluJb SINE Alu -17 295 1 23 0 0 0 chr13 48503885 48503908 -71240990 + AT_rich Low_complexity Low_complexity 1 23 0 867 185 20 0 chr13 48504248 48504399 -71240499 + FAM SINE Alu 12 165 -20 1658 163 16 16 chr13 48505248 48505554 -71239344 + AluJb SINE Alu 1 306 -6 530 230 122 12 chr13 48505725 48505898 -71239000 - MIR SINE MIR -33 229 39 1952 139 3 3 chr13 48506739 48507033 -71237865 + AluJb SINE Alu 1 294 -18 317 266 53 35 chr13 48507081 48507194 -71237704 + L1ME4a LINE L1 5815 5929 -235 303 200 130 20 chr13 48507365 48507465 -71237433 + L1ME4a LINE L1 5976 6086 -35 187 286 302 0 chr13 48507616 48507742 -71237156 - MIR3 SINE MIR -7 201 38 767 226 6 28 chr13 48508754 48508935 -71235963 - MIR SINE MIR -55 207 31 1859 155 30 0 chr13 48511712 48512015 -71232883 - AluJo SINE Alu 0 312 1 2148 107 3 3 chr13 48512355 48512665 -71232233 - AluSq SINE Alu 0 313 1 366 277 218 16 chr13 48512973 48513161 -71231737 + MIR SINE MIR 34 259 -3 1458 196 57 45 chr13 48513956 48514134 -71230764 + MER58B DNA MER1_type 2 187 -2233 1526 189 60 0 chr13 48514134 48514415 -71230483 + AluJo SINE Alu 1 298 -14 1458 196 57 45 chr13 48514415 48514572 -71230326 + MER58B DNA MER1_type 187 341 0 1732 155 7 42 chr13 48515429 48515738 -71229160 - AluJo SINE Alu -14 298 1 217 310 195 17 chr13 48516132 48516306 -71228592 + MIR SINE MIR 10 214 -48 714 259 96 0 chr13 48516806 48517003 -71227895 + MIR SINE MIR 26 241 -21 902 132 90 0 chr13 48517202 48517346 -71227552 - AluSg/x SINE Alu -1 311 155 2248 108 10 0 chr13 48517686 48517991 -71226907 - AluSx SINE Alu -4 308 1 1077 266 57 55 chr13 48518011 48518089 -71226809 - L1MC4a LINE L1 -1872 5936 5860 2300 100 0 16 chr13 48518089 48518399 -71226499 + AluSx SINE Alu 1 305 -7 1077 266 57 55 chr13 48518399 48518738 -71226160 - L1MC4a LINE L1 -1948 5860 5518 1119 178 70 19 chr13 48519067 48519280 -71225618 + AluJb SINE Alu 1 224 -88 24 67 0 0 chr13 48519289 48519334 -71225564 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr13 48520212 48520244 -71224654 + AT_rich Low_complexity Low_complexity 1 32 0 1814 174 7 3 chr13 48520775 48521062 -71223836 + AluJb SINE Alu 3 290 -22 2440 199 151 100 chr13 48521483 48522739 -71222159 - HAL1 LINE L1 -559 1948 630 2561 50 0 0 chr13 48523165 48523466 -71221432 - AluSg SINE Alu -5 305 5 2185 79 4 0 chr13 48523565 48523893 -71221005 - AluSg SINE Alu 0 330 2 207 0 0 0 chr13 48524205 48524228 -71220670 + (CGGG)n Simple_repeat Simple_repeat 2 24 0 280 291 196 59 chr13 48524749 48524927 -71219971 - L2 LINE L2 -38 3234 3082 1622 58 19 0 chr13 48524927 48525132 -71219766 - AluSp SINE Alu -9 304 96 280 291 196 59 chr13 48525132 48525224 -71219674 - L2 LINE L2 -190 3082 2927 1084 304 125 29 chr13 48525335 48526293 -71218605 + L2 LINE L2 2247 3297 -16 220 128 0 0 chr13 48526298 48526337 -71218561 + L2 LINE L2 3275 3313 0 2435 93 3 0 chr13 48529097 48529409 -71215489 - AluSp SINE Alu 0 313 1 2419 84 10 0 chr13 48529777 48530087 -71214811 - AluSq SINE Alu 0 313 1 29 37 0 19 chr13 48530087 48530114 -71214784 + AT_rich Low_complexity Low_complexity 1 27 -26 1877 162 0 7 chr13 48530114 48530410 -71214488 + AluJb SINE Alu 1 294 -18 29 37 0 19 chr13 48530410 48530436 -71214462 + AT_rich Low_complexity Low_complexity 27 53 0 2008 116 13 13 chr13 48530816 48531119 -71213779 - AluSq SINE Alu -10 303 1 974 200 76 89 chr13 48531585 48531818 -71213080 + MER33 DNA MER1_type 1 226 -2359 1914 146 36 7 chr13 48531818 48532120 -71212778 - AluSx SINE Alu -1 311 1 974 200 76 89 chr13 48532120 48532214 -71212684 + MER33 DNA MER1_type 226 320 -4 1741 149 10 30 chr13 48532264 48532560 -71212338 + AluJb SINE Alu 1 290 -22 5070 32 17 3 chr13 48532584 48533175 -71211723 + SVA Other Other 635 1233 -153 277 43 43 0 chr13 48533192 48533239 -71211659 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 228 234 62 0 chr13 48534103 48534167 -71210731 - MIR SINE MIR 0 262 195 1197 182 91 23 chr13 48534211 48534475 -71210423 + AluJo SINE Alu 1 282 -30 2554 65 0 7 chr13 48534991 48535299 -71209599 - AluY SINE Alu -3 308 3 534 289 86 31 chr13 48535404 48535695 -71209203 - L1ME3A LINE L1 -307 5863 5557 1358 108 10 0 chr13 48535695 48535889 -71209009 - Tigger5 DNA MER2_type -77 2246 2051 813 161 8 0 chr13 48535888 48536018 -71208880 - MER2 DNA MER2_type -214 131 1 * 355 233 0 0 chr13 48536061 48536151 -71208747 - L1ME3A LINE L1 -1495 4651 4562 41 0 0 0 chr13 48536167 48536208 -71208690 + AT_rich Low_complexity Low_complexity 1 41 0 220 258 54 12 chr13 48536241 48536408 -71208490 + (TATG)n Simple_repeat Simple_repeat 2 175 0 * 374 218 41 24 chr13 48536324 48536494 -71208404 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 264 172 0 17 chr13 48536507 48536565 -71208333 - L1ME3A LINE L1 -1610 4536 4480 198 0 0 0 chr13 48536633 48536655 -71208243 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 586 318 72 18 chr13 48536671 48537115 -71207783 - L1ME3A LINE L1 -1785 4361 3894 398 204 65 126 chr13 48537226 48537311 -71207587 - L1MC4 LINE L1 -128 7914 7825 2213 105 3 10 chr13 48537311 48537607 -71207291 - AluSc SINE Alu -15 294 1 398 204 65 126 chr13 48537607 48537634 -71207264 - L1MC4 LINE L1 -217 7825 7798 2452 119 28 19 chr13 48537634 48537995 -71206903 + THE1B LTR MaLR 1 364 0 398 204 65 126 chr13 48537995 48538111 -71206787 - L1MC4 LINE L1 -244 7798 7699 1928 151 3 7 chr13 48538129 48538421 -71206477 - AluJb SINE Alu -21 291 1 1647 149 76 21 chr13 48538579 48538867 -71206031 - AluJo SINE Alu -8 304 1 453 285 20 0 chr13 48538917 48538936 -71205962 - L1MA10 LINE L1 -1 6333 6315 1502 239 74 9 chr13 48538936 48539383 -71205515 - L1ME2 LINE L1 -14 6150 5675 2325 87 0 3 chr13 48539424 48539724 -71205174 - AluSq SINE Alu -14 299 1 305 316 62 11 chr13 48539806 48539983 -71204915 - L1ME2 LINE L1 -1771 4375 4190 1605 192 107 0 chr13 48540018 48540562 -71204336 - L1ME LINE L1 -510 5656 5046 2517 73 0 0 chr13 48541425 48541727 -71203171 - AluSq SINE Alu -11 302 1 482 296 129 21 chr13 48541781 48542014 -71202884 - MLT1L LTR MaLR -6 609 352 1838 164 0 23 chr13 48542569 48542874 -71202024 + AluJb SINE Alu 3 300 -12 656 298 113 55 chr13 48543464 48543552 -71201346 + L2 LINE L2 2285 2366 -947 441 0 0 0 chr13 48543552 48543601 -71201297 + (CA)n Simple_repeat Simple_repeat 2 50 0 656 298 113 55 chr13 48543601 48544472 -71200426 + L2 LINE L2 2366 3297 -16 275 269 34 89 chr13 48544593 48544695 -71200203 - L1M4 LINE L1 -914 5232 5126 1782 157 28 3 chr13 48544695 48544981 -71199917 - AluJo SINE Alu -19 293 1 275 269 34 89 chr13 48544981 48545205 -71199693 - L1M4 LINE L1 -1020 5126 4924 24 0 0 0 chr13 48546421 48546445 -71198453 + AT_rich Low_complexity Low_complexity 1 24 0 999 223 70 4 chr13 48546631 48546860 -71198038 - MIR SINE MIR -13 249 6 2790 10 0 0 chr13 48546931 48547229 -71197669 - AluY SINE Alu -11 300 3 237 237 61 53 chr13 48547757 48547871 -71197027 + L1MC5 LINE L1 7793 7907 -54 2295 89 0 7 chr13 48548139 48548443 -71196455 - AluSc SINE Alu -7 302 1 2271 116 0 0 chr13 48550856 48551159 -71193739 - AluSg SINE Alu -7 303 1 922 86 8 16 chr13 48551771 48551899 -71192999 + L1PB2 LINE L1 6023 6149 -2 2342 96 0 3 chr13 48552571 48552872 -71192026 - AluSq SINE Alu -13 300 1 2135 139 0 0 chr13 48553343 48553644 -71191254 - AluSx SINE Alu -11 301 1 536 205 31 75 chr13 48553878 48553983 -71190915 - MER5A DNA MER1_type -6 183 86 2467 93 0 0 chr13 48553983 48554294 -71190604 + AluSx SINE Alu 1 311 -1 536 205 31 75 chr13 48554294 48554349 -71190549 - MER5A DNA MER1_type -103 86 30 343 255 152 37 chr13 48554648 48554891 -71190007 + L1ME4a LINE L1 5848 6118 -3 224 296 37 12 chr13 48556918 48556999 -71187899 + L2 LINE L2 3190 3272 0 184 226 151 21 chr13 48557539 48557632 -71187266 + MER5A DNA MER1_type 1 105 -84 2487 79 0 0 chr13 48557704 48558009 -71186889 - AluSc SINE Alu -4 305 1 1988 140 64 14 chr13 48558589 48558946 -71185952 - THE1C LTR MaLR 0 375 1 1913 141 54 30 chr13 48559269 48559393 -71185505 - L1MB3 LINE L1 0 6183 6064 2211 120 3 84 chr13 48559393 48559760 -71185138 - MER1B DNA MER1_type 0 337 1 1913 141 54 30 chr13 48559760 48560003 -71184895 - L1MB3 LINE L1 -119 6064 5807 183 158 0 0 chr13 48560389 48560427 -71184471 + L2 LINE L2 3275 3312 -1 192 152 0 0 chr13 48562596 48562629 -71182269 + (CA)n Simple_repeat Simple_repeat 2 34 0 2204 81 14 17 chr13 48562848 48563145 -71181753 + AluSx SINE Alu 1 296 -16 2429 80 0 3 chr13 48563839 48564138 -71180760 + AluSg SINE Alu 1 298 -12 806 175 8 8 chr13 48566262 48566388 -71178510 - FLAM_A SINE Alu -7 126 1 1766 156 13 30 chr13 48566525 48566827 -71178071 + AluJb SINE Alu 1 297 -15 195 184 0 0 chr13 48566843 48566881 -71178017 + (TA)n Simple_repeat Simple_repeat 2 39 0 2037 98 73 11 chr13 48566974 48567261 -71177637 - AluSx SINE Alu -7 305 1 259 224 30 15 chr13 48567316 48567383 -71177515 - L2 LINE L2 0 3272 3205 193 286 0 0 chr13 48567520 48567569 -71177329 + L3 LINE CR1 1350 1398 -179 382 221 202 10 chr13 48568265 48568369 -71176529 - L2 LINE L2 -1 3271 3148 998 58 8 0 chr13 48569421 48569542 -71175356 + L1PA10 LINE L1 6047 6168 0 2347 81 10 0 chr13 48570030 48570325 -71174573 + AluSp SINE Alu 1 298 -15 22 35 0 0 chr13 48571013 48571042 -71173856 + AT_rich Low_complexity Low_complexity 1 29 0 2001 132 0 23 chr13 48571076 48571379 -71173519 + AluSx SINE Alu 6 301 -11 1671 169 53 3 chr13 48571799 48572083 -71172815 - AluJo SINE Alu -14 298 1 2255 93 3 3 chr13 48572284 48572606 -71172292 + AluSp SINE Alu 1 313 0 4013 108 9 9 chr13 48574481 48575008 -71169890 - MER1A DNA MER1_type 0 527 1 1961 128 35 0 chr13 48575893 48576175 -71168723 - AluJb SINE Alu -20 292 1 2365 85 10 7 chr13 48576206 48576511 -71168387 + AluSg SINE Alu 1 306 -4 2279 184 24 52 chr13 48576586 48576997 -71167901 + L1MB5 LINE L1 5678 6074 -100 1938 96 4 0 chr13 48576997 48577246 -71167652 + AluSx SINE Alu 51 300 -12 2279 184 24 52 chr13 48577246 48577338 -71167560 + L1MB5 LINE L1 6074 6167 -7 1760 158 41 3 chr13 48578083 48578375 -71166523 - AluJb SINE Alu -9 303 1 2128 108 14 11 chr13 48578914 48579201 -71165697 + AluSx SINE Alu 1 288 -24 240 200 78 0 chr13 48579201 48579291 -71165607 + GA-rich Low_complexity Low_complexity 1 97 0 2505 67 0 0 chr13 48579715 48580014 -71164884 + AluY SINE Alu 1 299 -12 1990 114 0 0 chr13 48580998 48581260 -71163638 + AluSc SINE Alu 1 262 -47 219 304 53 76 chr13 48581364 48581535 -71163363 - L2 LINE L2 -595 2719 2553 658 292 46 38 chr13 48581857 48582097 -71162801 + L1MB3 LINE L1 5515 5756 -2052 21 36 0 0 chr13 48582435 48582463 -71162435 + AT_rich Low_complexity Low_complexity 1 28 0 2304 120 3 40 chr13 48582597 48582947 -71161951 + MER1B DNA MER1_type 1 337 0 760 235 64 80 chr13 48583859 48584110 -71160788 - MIR SINE MIR -13 249 3 2317 82 20 0 chr13 48584293 48584586 -71160312 - AluY SINE Alu -12 299 1 973 124 0 8 chr13 48585734 48585863 -71159035 + FLAM_C SINE Alu 1 128 -5 2522 167 14 29 chr13 48586028 48586106 -71158792 + L1MB3 LINE L1 5706 5784 -399 4772 167 39 24 chr13 48586106 48586451 -71158447 + MER6 DNA MER2_type 1 339 -526 186 43 0 0 chr13 48586451 48586474 -71158424 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 4772 167 39 24 chr13 48586474 48586517 -71158381 + MER6 DNA MER2_type 339 380 -485 2370 71 3 7 chr13 48586517 48586814 -71158084 + AluSq SINE Alu 11 306 -7 4772 167 39 24 chr13 48586814 48587275 -71157623 + MER6 DNA MER2_type 380 864 -1 2522 167 14 29 chr13 48587275 48587471 -71157427 + L1MB3 LINE L1 5784 5981 -202 2582 60 0 0 chr13 48587471 48587773 -71157125 + AluY SINE Alu 1 302 -9 2522 167 14 29 chr13 48587773 48587982 -71156916 + L1MB3 LINE L1 5981 6183 0 818 227 52 0 chr13 48588725 48588897 -71156001 - MLT1G LTR MaLR -49 541 361 483 197 90 90 chr13 48588924 48589112 -71155786 - MER21B LTR ERV1 -361 570 290 411 321 64 28 chr13 48589657 48589906 -71154992 + L1M4 LINE L1 4491 4748 -1398 1847 116 18 39 chr13 48589926 48590211 -71154687 + AluSx SINE Alu 21 299 -13 478 276 26 0 chr13 48590250 48590406 -71154492 + HAL1 LINE L1 990 1149 -1358 870 124 24 143 chr13 48590423 48590632 -71154266 + AluJb SINE Alu 120 303 -9 286 242 194 75 chr13 48590633 48590702 -71154196 + HAL1 LINE L1 1196 1255 -1252 1763 132 0 75 chr13 48590702 48591021 -71153877 - AluJo SINE Alu -17 295 1 286 242 194 75 chr13 48591021 48591203 -71153695 + HAL1 LINE L1 1255 1477 -1030 801 130 0 21 chr13 48591215 48591477 -71153421 + AluJb SINE Alu 2 307 -5 2003 149 20 0 chr13 48591477 48591778 -71153120 + AluSx SINE Alu 1 307 -5 276 370 31 8 chr13 48591902 48592029 -71152869 + L3b LINE CR1 1102 1231 -352 2343 88 7 3 chr13 48592401 48592706 -71152192 + AluSg SINE Alu 1 306 -4 2641 48 0 0 chr13 48592707 48593017 -71151881 + AluY SINE Alu 2 311 0 6092 61 55 7 chr13 48593088 48594403 -71150495 + SVA Other Other 1 1415 0 630 307 43 53 chr13 48596263 48596660 -71148238 - L1MC4a LINE L1 -1926 5882 5490 2169 92 0 0 chr13 48596755 48597036 -71147862 + AluSc SINE Alu 11 291 -18 475 221 387 6 chr13 48597058 48597239 -71147659 - MIR SINE MIR 0 262 13 1771 148 0 49 chr13 48597388 48597526 -71147372 + AluJb SINE Alu 1 144 -168 1960 132 0 22 chr13 48597526 48597845 -71147053 + AluSx SINE Alu 1 312 0 1771 148 0 49 chr13 48597845 48598030 -71146868 + AluJb SINE Alu 144 308 -4 448 260 83 35 chr13 48598822 48598991 -71145907 - MIR SINE MIR -6 256 80 2150 98 3 0 chr13 48599161 48599456 -71145442 + AluSp SINE Alu 1 296 -17 1953 151 0 0 chr13 48600142 48600440 -71144458 + AluJb SINE Alu 2 299 -13 1649 153 25 11 chr13 48600616 48600898 -71144000 + AluSx SINE Alu 1 286 -26 2338 76 0 3 chr13 48601545 48601846 -71143052 - AluSq SINE Alu -13 300 1 2066 132 0 0 chr13 48601876 48602180 -71142718 - AluSx SINE Alu -8 304 1 2031 114 0 0 chr13 48602235 48602515 -71142383 - AluSx SINE Alu -32 280 1 22 0 0 0 chr13 48602700 48602722 -71142176 + AT_rich Low_complexity Low_complexity 1 22 0 2854 143 54 14 chr13 48602727 48603230 -71141668 + L1MB3 LINE L1 5539 6061 -122 5182 115 26 4 chr13 48603231 48603999 -71140899 + L1PA16 LINE L1 5373 6157 -9 2197 76 33 3 chr13 48604002 48604303 -71140595 + AluY SINE Alu 1 310 -1 643 167 0 16 chr13 48604321 48604447 -71140451 + L1MB3 LINE L1 6053 6176 -7 2120 125 46 3 chr13 48606180 48606509 -71138389 + MER2 DNA MER2_type 1 343 -1 2251 80 3 3 chr13 48607438 48607739 -71137159 + AluY SINE Alu 1 301 -10 1747 169 3 13 chr13 48608399 48608700 -71136198 + AluJb SINE Alu 1 298 -14 1278 328 139 33 chr13 48609174 48610292 -71134606 - L2 LINE L2 -528 2786 1550 2160 96 0 0 chr13 48610302 48610609 -71134289 + AluSq SINE Alu 2 308 0 551 167 175 0 chr13 48610768 48610888 -71134010 - L1M4 LINE L1 -627 5557 5417 1878 116 20 14 chr13 48610991 48611283 -71133615 + AluJo SINE Alu 1 294 -18 276 30 0 0 chr13 48611477 48611510 -71133388 + (TG)n Simple_repeat Simple_repeat 2 34 0 2016 113 3 10 chr13 48611650 48611943 -71132955 - AluSg SINE Alu -19 291 1 24 0 0 0 chr13 48613753 48613777 -71131121 + GC_rich Low_complexity Low_complexity 1 24 0 279 236 0 45 chr13 48614291 48614380 -71130518 - MIR3 SINE MIR -15 193 109 327 243 38 2 chr13 48614879 48614990 -71129908 + MER67B LTR ERV1 352 661 0 180 247 0 130 chr13 48615012 48615089 -71129809 + L2 LINE L2 2995 3061 -211 230 257 284 28 chr13 48615212 48615321 -71129577 + L2 LINE L2 3172 3308 -5 181 244 0 110 chr13 48615477 48615559 -71129339 - L2 LINE L2 -14 3258 3186 1846 138 39 0 chr13 48615810 48616092 -71128806 + AluSx SINE Alu 6 298 -14 831 176 0 0 chr13 48616268 48616404 -71128494 + FLAM_C SINE Alu 2 137 -6 1554 175 10 30 chr13 48616511 48616814 -71128084 - AluJo SINE Alu -15 297 1 2152 122 0 0 chr13 48617011 48617314 -71127584 + AluSx SINE Alu 3 305 -7 1746 174 0 3 chr13 48617355 48617665 -71127233 - AluJo SINE Alu -3 309 1 1694 118 3 96 chr13 48618118 48618440 -71126458 + AluSq SINE Alu 1 292 -21 399 211 26 18 chr13 48618451 48618559 -71126339 + L1MC4 LINE L1 7466 7675 -367 853 181 0 19 chr13 48618559 48618719 -71126179 - FRAM SINE Alu -19 157 1 289 264 76 61 chr13 48618732 48618855 -71126043 + L1MC5 LINE L1 7579 7699 -343 1793 148 29 0 chr13 48618855 48619172 -71125726 + AluJo SINE Alu 1 325 0 289 264 76 61 chr13 48619172 48619328 -71125570 + L1MC5 LINE L1 7699 7968 -74 1672 137 108 0 chr13 48619362 48619640 -71125258 - AluSg SINE Alu -2 308 1 371 264 11 0 chr13 48619729 48619816 -71125082 - L2 LINE L2 0 3272 3185 500 286 93 6 chr13 48619843 48620004 -71124894 + LTR16A LTR ERVL 18 192 -258 5313 68 32 56 chr13 48620233 48621192 -71123706 + SVA Other Other 17 868 -645 8117 193 85 113 chr13 48621294 48622160 -71122738 + MER66A-int LTR ERV1 2504 3393 -3283 1944 135 0 0 chr13 48622160 48622487 -71122411 + AluSq SINE Alu 1 327 0 8117 193 85 113 chr13 48622487 48622681 -71122217 + MER66A-int LTR ERV1 3393 3591 -3085 1689 168 14 0 chr13 48622681 48622961 -71121937 + AluJb SINE Alu 1 284 -28 360 0 0 0 chr13 48622961 48623001 -71121897 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 8117 193 85 113 chr13 48623001 48623499 -71121399 + MER66A-int LTR ERV1 3590 4100 -2576 2112 108 3 13 chr13 48623499 48623813 -71121085 + AluSx SINE Alu 2 312 0 8117 193 85 113 chr13 48623813 48624116 -71120782 + MER66A-int LTR ERV1 4100 4410 -2266 2336 88 0 0 chr13 48624116 48624421 -71120477 - AluSc SINE Alu -4 305 1 8117 193 85 113 chr13 48624421 48625060 -71119838 + MER66A-int LTR ERV1 4410 4941 -1735 1611 162 31 45 chr13 48625049 48625307 -71119591 + MER66A-int LTR ERV1 6390 6645 -31 * 2283 98 0 0 chr13 48625307 48625612 -71119286 + AluSq SINE Alu 1 305 -8 1611 162 31 45 chr13 48625612 48625643 -71119255 + MER66A-int LTR ERV1 6645 6675 -1 1287 200 108 53 chr13 48625711 48626132 -71118766 + MER66A LTR ERV1 99 462 -16 1589 121 4 12 chr13 48626139 48626388 -71118510 + AluJb SINE Alu 58 304 -8 2165 115 3 0 chr13 48626390 48626702 -71118196 + AluSq SINE Alu 1 313 0 2207 142 65 70 chr13 48626929 48627387 -71117511 - MER31B LTR ERV1 -8 458 3 191 146 24 0 chr13 48628340 48628381 -71116517 + T-rich Low_complexity Low_complexity 3 44 0 428 301 46 20 chr13 48628812 48628965 -71115933 - L1 LINE L1 -2678 3468 3312 33 0 0 0 chr13 48629244 48629277 -71115621 + AT_rich Low_complexity Low_complexity 1 33 0 1261 85 0 6 chr13 48629277 48629441 -71115457 - AluSq SINE Alu -150 163 1 2616 93 14 19 chr13 48629513 48629879 -71115019 + THE1B LTR MaLR 1 364 0 389 283 66 0 chr13 48629923 48630029 -71114869 + MIR3 SINE MIR 50 162 -46 * 667 226 75 0 chr13 48630027 48630173 -71114725 - MIR SINE MIR 0 262 106 2143 109 3 0 chr13 48630766 48631068 -71113830 + AluSx SINE Alu 1 303 -9 1392 170 130 4 chr13 48631157 48631410 -71113488 - AluJo SINE Alu -14 288 4 2009 134 0 3 chr13 48631781 48632080 -71112818 + AluSx SINE Alu 1 298 -14 4304 156 84 82 chr13 48632095 48632671 -71112227 - L1MC3 LINE L1 -1 7784 7211 258 323 0 0 chr13 48632671 48632764 -71112134 - MLT1F1 LTR MaLR -442 125 33 4304 156 84 82 chr13 48632764 48632896 -71112002 - L1MC3 LINE L1 -574 7211 7081 2162 116 0 0 chr13 48632896 48633199 -71111699 - AluSx SINE Alu -9 303 1 4304 156 84 82 chr13 48633199 48633551 -71111347 - L1MC3 LINE L1 -704 7081 6629 404 242 166 6 chr13 48633889 48634046 -71110852 + LTR33A LTR ERVL 298 479 -44 186 43 0 0 chr13 48634896 48634919 -71109979 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 777 128 0 0 chr13 48634931 48635040 -71109858 - FLAM_C SINE Alu -33 110 2 2219 75 24 0 chr13 48635052 48635345 -71109553 - AluY SINE Alu -11 300 1 433 239 85 85 chr13 48635927 48636186 -71108712 + MER102b DNA MER1_type 66 324 -17 348 24 0 0 chr13 48636248 48636289 -71108609 + (CA)n Simple_repeat Simple_repeat 2 42 0 303 262 145 29 chr13 48636302 48636474 -71108424 + L2 LINE L2 2870 3061 -211 771 150 277 33 chr13 48636603 48636816 -71108082 - ORSL DNA AcHobo -4 271 7 1841 146 0 10 chr13 48636816 48637110 -71107788 + AluSx SINE Alu 1 291 -21 684 288 54 21 chr13 48637174 48637414 -71107484 - MLT1J LTR MaLR -261 250 3 721 235 24 18 chr13 48637441 48637611 -71107287 - MLT1F LTR MaLR -353 189 19 667 254 177 4 chr13 48637919 48638167 -71106731 - L2 LINE L2 -56 3257 2967 1077 145 0 6 chr13 48638167 48638333 -71106565 + AluSp SINE Alu 1 165 -148 2023 115 30 0 chr13 48638618 48638913 -71105985 + AluSx SINE Alu 1 304 -8 331 281 117 12 chr13 48638913 48639084 -71105814 - L2 LINE L2 -1808 1506 1318 493 191 161 56 chr13 48639125 48639287 -71105611 - MER5A DNA MER1_type 0 189 11 1349 173 38 125 chr13 48639301 48639701 -71105197 + MLT1A1 LTR MaLR 1 365 0 423 288 245 0 chr13 48639721 48639954 -71104944 - L2 LINE L2 -2058 1256 967 685 111 0 10 chr13 48639956 48640055 -71104843 + MER4A LTR ERV1 1 98 -566 1629 126 3 83 chr13 48640055 48640389 -71104509 + MER4A LTR ERV1 261 643 -21 1010 299 107 13 chr13 48640393 48640787 -71104111 - L2 LINE L2 -2352 962 532 451 289 101 7 chr13 48640845 48640994 -71103904 - L2 LINE L2 -547 2767 2605 1013 147 18 6 chr13 48640997 48641167 -71103731 + MER5A DNA MER1_type 5 176 -13 2141 107 0 7 chr13 48641744 48642054 -71102844 - AluSg1 SINE Alu -1 308 1 430 313 82 13 chr13 48642411 48642638 -71102260 - MIR SINE MIR 0 262 15 2149 125 0 0 chr13 48642990 48643301 -71101597 + AluSx SINE Alu 1 311 -1 2199 62 13 16 chr13 48643359 48643663 -71101235 - AluY SINE Alu -8 303 1 1276 50 12 0 chr13 48643942 48644102 -71100796 + AluY SINE Alu 1 162 -149 225 0 0 0 chr13 48644117 48644142 -71100756 + (A)n Simple_repeat Simple_repeat 1 25 0 321 245 174 11 chr13 48644867 48644979 -71099919 + MIR SINE MIR 36 151 -72 273 236 0 0 chr13 48645453 48645508 -71099390 - L2 LINE L2 -8 3264 3210 1795 119 22 35 chr13 48645542 48645854 -71099044 + AluJo SINE Alu 1 308 -4 696 213 21 0 chr13 48646014 48646155 -71098743 - MLT1B LTR MaLR -246 144 1 897 147 0 0 chr13 48646168 48646297 -71098601 - FLAM_C SINE Alu -4 129 1 282 190 15 198 chr13 48646359 48646422 -71098476 - MER5B DNA MER1_type 0 178 105 2335 101 0 0 chr13 48646422 48646720 -71098178 + AluSx SINE Alu 1 298 -14 282 190 15 198 chr13 48646720 48646878 -71098020 - MER5B DNA MER1_type -73 105 1 2248 117 3 0 chr13 48647014 48647321 -71097577 - AluSg SINE Alu -2 308 1 451 304 89 69 chr13 48648091 48648533 -71096365 + L1MEc LINE L1 946 1378 -1198 1827 178 13 3 chr13 48648533 48648831 -71096067 + AluJb SINE Alu 1 301 -11 451 304 89 69 chr13 48648831 48648931 -71095967 + L1MEc LINE L1 1378 1475 -1101 2104 123 0 13 chr13 48648931 48649232 -71095666 - AluSx SINE Alu -15 297 1 451 304 89 69 chr13 48649232 48649280 -71095618 + L1MEc LINE L1 1475 1610 -966 1546 212 6 10 chr13 48649283 48649594 -71095304 + AluJo SINE Alu 1 310 -2 216 97 0 0 chr13 48649597 48649628 -71095270 + (A)n Simple_repeat Simple_repeat 1 31 0 2172 117 0 0 chr13 48649686 48650014 -71094884 - AluSc SINE Alu 0 328 1 2031 143 0 3 chr13 48650016 48650310 -71094588 - AluSx SINE Alu -19 293 1 1599 216 14 0 chr13 48650349 48650646 -71094252 - MER66A-int LTR ERV1 -3429 3247 2947 3034 209 20 8 chr13 48650749 48651343 -71093555 - MER66A-int LTR ERV1 -3743 2933 2333 * 4160 189 67 23 chr13 48651328 48653262 -71091636 - MER66A-int LTR ERV1 -4507 2169 65 1493 209 85 79 chr13 48653407 48653949 -71090949 - MER66A LTR ERV1 0 478 97 370 288 72 7 chr13 48653999 48654152 -71090746 - MIR SINE MIR -70 192 30 2535 54 0 7 chr13 48655530 48655828 -71089070 + AluY SINE Alu 1 296 -15 380 235 37 0 chr13 48656018 48656099 -71088799 + Tigger3(Golem) DNA MER2_type 1 84 -2945 1101 141 0 0 chr13 48656157 48656168 -71088730 - AluSg SINE Alu -154 156 146 1557 178 8 0 chr13 48656168 48656426 -71088472 - AluSx SINE Alu -52 260 1 1101 141 0 0 chr13 48656426 48656570 -71088328 - AluSg SINE Alu -163 147 1 12580 94 65 47 chr13 48656570 48657263 -71087635 + LOR1-int LTR ERV1 603 1282 -6838 1845 120 88 7 chr13 48657263 48657547 -71087351 + AluSg SINE Alu 1 307 -3 12580 94 65 47 chr13 48657547 48658603 -71086295 + LOR1-int LTR ERV1 1282 2402 -5718 1898 143 58 0 chr13 48658603 48658896 -71086002 - AluSg SINE Alu 0 310 1 12580 94 65 47 chr13 48658896 48659323 -71085575 + LOR1-int LTR ERV1 2402 2820 -5300 2127 204 78 5 chr13 48659456 48659877 -71085021 + MER82 DNA MER2_type 202 653 0 671 141 8 41 chr13 48660003 48660124 -71084774 + FLAM_A SINE Alu 20 136 -6 309 346 56 26 chr13 48660124 48660358 -71084540 + L3b LINE CR1 1259 1499 -84 2121 132 7 0 chr13 48660812 48661122 -71083776 + AluSx SINE Alu 1 312 0 258 307 0 0 chr13 48661803 48661878 -71083020 + HsTC2 DNA Tc2 44 118 -1780 * 294 178 0 0 chr13 48661876 48661921 -71082977 + HsTC2 DNA Tc2 1242 1286 -612 5551 133 4 55 chr13 48662644 48664208 -71080690 + L1PA14 LINE L1 4661 6143 -18 257 184 0 0 chr13 48664218 48664267 -71080631 + L1M LINE L1 5320 5368 -936 2021 131 3 10 chr13 48664269 48664566 -71080332 + AluSx SINE Alu 1 295 -17 15278 63 7 2 chr13 48665001 48666970 -71077928 + L1P LINE L1 2605 4581 -1565 237 283 72 72 chr13 48667175 48667341 -71077557 + MLT1K LTR MaLR 413 578 -10 2205 106 17 3 chr13 48667753 48668054 -71076844 + AluSx SINE Alu 1 305 -7 2037 125 0 14 chr13 48668233 48668521 -71076377 + AluSx SINE Alu 1 284 -28 4210 100 24 3 chr13 48669558 48670137 -71074761 + MER51A LTR ERV1 1 591 -43 6614 65 3 43 chr13 48670165 48671092 -71073806 + SVA Other Other 497 1386 0 2276 108 3 3 chr13 48671128 48671433 -71073465 + AluSx SINE Alu 8 312 0 726 201 67 12 chr13 48671435 48671599 -71073299 + LTR16A LTR ERVL 206 378 -72 2477 305 47 34 chr13 48671609 48672237 -71072661 + ERVL LTR ERVL 4057 4675 -1089 5251 59 6 0 chr13 48672237 48672880 -71072018 + L1PA8 LINE L1 5521 6167 -5 2477 305 47 34 chr13 48672880 48673479 -71071419 + ERVL LTR ERVL 4675 5300 -464 2105 145 92 36 chr13 48673653 48674046 -71070852 - MSTB LTR MaLR 0 426 12 251 211 18 18 chr13 48674086 48674143 -71070755 + LTR16A LTR ERVL 96 152 -298 423 231 77 17 chr13 48674177 48674294 -71070604 + LTR16A LTR ERVL 327 450 0 281 329 47 20 chr13 48674399 48674548 -71070350 - L2 LINE L2 -220 3052 2900 1739 131 37 0 chr13 48674589 48674834 -71070064 + AluSx SINE Alu 1 254 -58 1363 179 38 4 chr13 48674834 48675069 -71069829 - AluJb SINE Alu -69 243 1 388 314 0 16 chr13 48675076 48675200 -71069698 - L2 LINE L2 -540 2774 2653 2171 127 0 10 chr13 48675226 48675534 -71069364 + AluSc SINE Alu 5 309 0 1773 263 80 50 chr13 48675542 48675867 -71069031 + MER115 DNA AcHobo 114 428 -265 8688 44 0 0 chr13 48675867 48676836 -71068062 + LTR5 LTR ERVK 1 969 0 1773 263 80 50 chr13 48676836 48676947 -71067951 + MER115 DNA AcHobo 428 534 -159 1752 178 3 26 chr13 48676947 48677251 -71067647 + AluJb SINE Alu 1 297 -15 1773 263 80 50 chr13 48677251 48677376 -71067522 + MER115 DNA AcHobo 534 693 0 448 305 54 12 chr13 48677390 48677623 -71067275 + L1MEc LINE L1 1685 1972 -815 2174 117 7 7 chr13 48677623 48677921 -71066977 - AluSx SINE Alu -14 298 1 448 305 54 12 chr13 48677921 48677938 -71066960 + L1MEc LINE L1 1972 1987 -800 768 146 0 23 chr13 48678191 48678321 -71066577 - FLAM_C SINE Alu -6 137 11 22 0 0 0 chr13 48678336 48678358 -71066540 + AT_rich Low_complexity Low_complexity 1 22 0 2508 64 3 0 chr13 48678502 48678800 -71066098 - AluY SINE Alu -12 299 1 884 147 45 51 chr13 48679361 48679391 -71065507 + FAM SINE Alu 1 4294967192 -289 2888 180 68 62 chr13 48679391 48679735 -71065163 - LTR8A LTR ERV1 0 727 386 2448 82 0 13 chr13 48679735 48680050 -71064848 + AluY SINE Alu 1 311 0 2888 180 68 62 chr13 48680050 48680428 -71064470 - LTR8A LTR ERV1 -341 386 1 884 147 45 51 chr13 48680428 48680574 -71064324 + FAM SINE Alu -105 40 -9 963 227 154 18 chr13 48681017 48681186 -71063712 - MLT1J2 LTR MaLR -125 325 180 4638 125 25 11 chr13 48681186 48681906 -71062992 + MER50 LTR ERV1 1 730 -4 963 227 154 18 chr13 48681906 48682022 -71062876 - MLT1J2 LTR MaLR -270 180 1 293 171 57 14 chr13 48682033 48682103 -71062795 - MIR SINE MIR -70 192 120 387 154 0 0 chr13 48682107 48682189 -71062709 - L1MA4A LINE L1 -1 6276 6074 1473 189 0 0 chr13 48682243 48682476 -71062422 - AluJb SINE Alu -77 235 3 382 336 0 0 chr13 48682477 48682587 -71062311 - MIR SINE MIR -133 129 20 2253 103 16 13 chr13 48682820 48682951 -71061947 + AluSx SINE Alu 1 130 -182 2419 80 0 17 chr13 48682951 48683250 -71061648 + AluSp SINE Alu 1 294 -19 2253 103 16 13 chr13 48683250 48683429 -71061469 + AluSx SINE Alu 130 312 0 1981 121 15 0 chr13 48683547 48683819 -71061079 + AluSx SINE Alu 5 280 -32 204 40 0 0 chr13 48683820 48683845 -71061053 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 443 190 197 42 chr13 48683876 48684018 -71060880 + MLT1J2 LTR MaLR 162 325 -125 875 164 0 0 chr13 48684451 48684585 -71060313 + AluJo SINE Alu 1 134 -178 854 134 0 0 chr13 48684868 48684987 -71059911 - AluSg/x SINE Alu -20 290 172 1532 123 19 0 chr13 48684987 48685199 -71059699 - AluSx SINE Alu -96 216 1 1341 151 106 70 chr13 48686245 48686529 -71058369 - AluJo SINE Alu -18 294 1 250 307 0 0 chr13 48686793 48686868 -71058030 + L1M4 LINE L1 3986 4060 -2086 1716 246 55 50 chr13 48686888 48687469 -71057429 + MLT1G LTR MaLR 7 590 0 348 289 127 12 chr13 48687474 48687820 -71057078 + L1M4 LINE L1 4075 4460 -1686 491 269 33 61 chr13 48688067 48688279 -71056619 + L1ME LINE L1 255 460 -5610 * 1138 229 46 134 chr13 48688270 48688774 -71056124 + L1ME LINE L1 116 553 -5517 2242 77 40 10 chr13 48688774 48689073 -71055825 - AluY SINE Alu -3 308 1 1138 229 46 134 chr13 48689073 48689382 -71055516 + L1ME LINE L1 553 888 -5182 411 257 49 83 chr13 48689387 48689593 -71055305 + L1M4 LINE L1 4474 4663 -1483 2208 113 10 0 chr13 48689593 48689884 -71055014 + AluSx SINE Alu 1 294 -18 411 257 49 83 chr13 48689884 48690062 -71054836 + L1M4 LINE L1 4663 4845 -1301 2319 177 40 42 chr13 48690214 48690717 -71054181 - L1MA10 LINE L1 -10 6324 5823 347 113 0 0 chr13 48690717 48690770 -71054128 - AluSx SINE Alu -1 300 248 1463 92 22 0 chr13 48690770 48690955 -71053943 - AluSx SINE Alu -123 189 1 1538 139 0 0 chr13 48690986 48691195 -71053703 + AluSg SINE Alu 2 210 -100 650 220 43 10 chr13 48691195 48691404 -71053494 + HAL1 LINE L1 1050 1265 -1242 1900 136 4 0 chr13 48691411 48691683 -71053215 + AluSx SINE Alu 1 273 -39 397 191 55 9 chr13 48691715 48691825 -71053073 - MIR SINE MIR -58 204 90 648 221 0 43 chr13 48691830 48691970 -71052928 - FLAM_C SINE Alu -4 139 6 2109 120 0 0 chr13 48692090 48692396 -71052502 - AluSx SINE Alu 0 306 1 1637 113 25 119 chr13 48693758 48694076 -71050822 + AluSx SINE Alu 1 288 -24 378 240 60 160 chr13 48694087 48694176 -71050722 - MIR3 SINE MIR -10 198 138 1614 151 10 67 chr13 48694176 48694475 -71050423 + AluJo SINE Alu 1 282 -30 378 240 60 160 chr13 48694475 48694585 -71050313 - MIR3 SINE MIR -70 138 19 235 268 155 54 chr13 48694858 48695026 -71049872 + MLT1L LTR MaLR 1 185 -430 2131 130 0 7 chr13 48695147 48695446 -71049452 - AluSq SINE Alu -16 297 1 560 265 48 32 chr13 48695514 48695703 -71049195 + MLT1L LTR MaLR 411 602 -13 270 233 93 0 chr13 48695707 48695793 -71049105 + MIR SINE MIR 107 200 -62 2302 110 0 3 chr13 48696127 48696437 -71048461 - AluSg SINE Alu -1 309 1 239 296 12 0 chr13 48696437 48696518 -71048380 + L1ME LINE L1 5603 5684 -437 2354 67 24 7 chr13 48696641 48696939 -71047959 + AluY SINE Alu 1 303 -8 713 43 0 11 chr13 48697673 48697767 -71047131 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 1837 152 0 14 chr13 48697768 48698064 -71046834 - AluJo SINE Alu -20 292 1 2349 58 3 0 chr13 48698101 48698395 -71046503 + AluY SINE Alu 1 295 -16 374 229 26 52 chr13 48698839 48698992 -71045906 - MER20B DNA MER1_type -19 764 616 261 0 0 0 chr13 48698998 48699027 -71045871 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1312 133 35 0 chr13 48699030 48699233 -71045665 - AluJo SINE Alu -30 282 73 400 197 0 40 chr13 48699344 48699420 -71045478 - AluJo SINE Alu -228 74 2 * 1520 248 45 73 chr13 48699420 48699788 -71045110 - MER20B DNA MER1_type -169 614 263 2028 107 0 0 chr13 48699788 48700128 -71044770 - AluSg SINE Alu 0 340 1 1520 248 45 73 chr13 48700128 48700291 -71044607 - MER20B DNA MER1_type -520 263 97 641 271 42 47 chr13 48701820 48702012 -71042886 - MIR SINE MIR -28 234 44 2109 66 0 0 chr13 48703169 48703428 -71041470 - AluSc SINE Alu -12 297 39 210 71 0 0 chr13 48703614 48703642 -71041256 + (T)n Simple_repeat Simple_repeat 1 28 0 2079 124 0 0 chr13 48703655 48703953 -71040945 + AluSx SINE Alu 1 298 -14 1692 164 4 0 chr13 48703960 48704240 -71040658 - AluJb SINE Alu -30 282 2 2225 103 0 0 chr13 48704421 48704731 -71040167 - AluSg SINE Alu 0 310 1 904 154 143 0 chr13 48704759 48704934 -71039964 + AluSg/x SINE Alu 84 283 -27 217 0 61 0 chr13 48704939 48704972 -71039926 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1746 122 13 55 chr13 48705655 48705966 -71038932 + AluSx SINE Alu 1 298 -14 945 129 0 0 chr13 48705967 48706157 -71038741 + AluJb SINE Alu 142 331 0 1772 133 35 90 chr13 48706268 48706636 -71038262 + MER7A DNA MER2_type 1 346 0 742 144 0 24 chr13 48707090 48707215 -71037683 - FLAM_C SINE Alu -19 124 3 1679 139 31 17 chr13 48707977 48708292 -71036606 + AluJo SINE Alu 1 312 0 1594 143 16 0 chr13 48708448 48708699 -71036199 + AluSx SINE Alu 45 299 -13 26 50 0 0 chr13 48709052 48709092 -71035806 + AT_rich Low_complexity Low_complexity 1 40 0 210 268 18 0 chr13 48709485 48709541 -71035357 - L3 LINE CR1 -162 1415 1359 230 314 57 14 chr13 48709672 48709742 -71035156 - L2 LINE L2 -37 3276 3204 549 274 104 38 chr13 48709815 48710027 -71034871 - MIR SINE MIR -14 248 23 705 301 59 80 chr13 48710697 48711143 -71033755 - L1MEd LINE L1 -5364 755 328 2136 103 0 7 chr13 48711143 48711443 -71033455 + AluSg SINE Alu 3 300 -10 705 301 59 80 chr13 48711443 48711721 -71033177 - L1MEd LINE L1 -5791 328 46 4420 101 23 3 chr13 48712255 48712861 -71032037 - MER51A LTR ERV1 -16 618 1 1701 159 7 3 chr13 48713994 48714290 -71030608 - AluJb SINE Alu -10 302 6 709 141 17 85 chr13 48714296 48714322 -71030576 + MER67C LTR ERV1 8 34 -676 917 179 41 9 chr13 48714322 48714540 -71030358 + L1MA4 LINE L1 6072 6296 -4 709 141 17 85 chr13 48714540 48714690 -71030208 + MER67C LTR ERV1 34 172 -538 666 238 12 12 chr13 48714691 48714859 -71030039 + FRAM SINE Alu 1 168 -8 2875 180 49 9 chr13 48714859 48715393 -71029505 + MER67C LTR ERV1 156 710 0 405 0 0 0 chr13 48715696 48715741 -71029157 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1415 162 7 57 chr13 48715744 48715914 -71028984 - AluJo SINE Alu -30 282 132 2053 115 0 10 chr13 48715914 48716210 -71028688 + AluSp SINE Alu 1 293 -20 1415 162 7 57 chr13 48716210 48716336 -71028562 - AluJo SINE Alu -180 132 1 561 298 35 29 chr13 48716924 48717095 -71027803 + MIR SINE MIR 21 192 -70 1526 171 7 20 chr13 48717149 48717441 -71027457 - AluJo SINE Alu -24 288 1 192 293 40 91 chr13 48717456 48717555 -71027343 - L2 LINE L2 -38 3234 3141 281 226 0 128 chr13 48718458 48718560 -71026338 - LTR33 LTR ERVL -432 89 1 599 175 0 47 chr13 48719211 48719447 -71025451 + GA-rich Low_complexity Low_complexity 1 224 0 278 289 0 40 chr13 48719447 48719466 -71025432 + polypurine Low_complexity Low_complexity 1 72 0 1969 148 3 0 chr13 48719466 48719831 -71025067 + AluSx SINE Alu 1 366 0 214 151 0 75 chr13 48719856 48719909 -71024989 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 387 285 199 5 chr13 48720092 48720278 -71024620 - MIR SINE MIR -18 244 23 295 271 107 0 chr13 48720357 48720479 -71024419 + HAL1 LINE L1 320 454 -2053 1875 134 6 16 chr13 48720537 48720850 -71024048 + AluJb SINE Alu 1 310 -2 651 276 110 46 chr13 48721087 48721216 -71023682 - L1MC4 LINE L1 -1 8041 7922 2092 139 0 0 chr13 48721216 48721526 -71023372 - AluSx SINE Alu -2 310 1 651 276 110 46 chr13 48721526 48722005 -71022893 - L1MC4 LINE L1 -120 7922 7365 2358 78 0 0 chr13 48722005 48722312 -71022586 - AluY SINE Alu -4 307 1 651 276 110 46 chr13 48722312 48722460 -71022438 - L1MC4 LINE L1 -677 7365 7228 346 233 78 11 chr13 48722509 48722599 -71022299 + HAL1 LINE L1 812 907 -1600 555 276 70 60 chr13 48722599 48722769 -71022129 + HAL1 LINE L1 866 1033 -1474 1793 140 23 30 chr13 48722769 48723069 -71021829 - AluJo SINE Alu -14 298 1 555 276 70 60 chr13 48723069 48723199 -71021699 + HAL1 LINE L1 1033 1160 -1347 2174 119 0 0 chr13 48723199 48723509 -71021389 + AluSg SINE Alu 1 310 0 555 276 70 60 chr13 48723509 48723638 -71021260 + HAL1 LINE L1 1160 1300 -1207 1590 136 81 34 chr13 48723640 48723935 -71020963 + AluJb SINE Alu 1 309 -3 398 156 16 148 chr13 48723950 48724072 -71020826 + L1MA9 LINE L1 6156 6269 -30 25 51 0 0 chr13 48724073 48724112 -71020786 + AT_rich Low_complexity Low_complexity 1 39 0 526 164 229 0 chr13 48724118 48724258 -71020640 + HAL1 LINE L1 1372 1543 -964 2208 109 0 3 chr13 48724261 48724565 -71020333 + AluSx SINE Alu 1 303 -9 1877 140 0 7 chr13 48724576 48724876 -71020022 + AluJo SINE Alu 1 298 -14 2364 49 0 0 chr13 48724879 48725215 -71019683 + AluY SINE Alu 1 336 0 3411 198 94 7 chr13 48725245 48726083 -71018815 + L1MC4a LINE L1 6898 7808 0 1833 234 115 39 chr13 48726086 48726758 -71018140 + HAL1 LINE L1 1553 2275 -232 450 270 0 0 chr13 48727166 48727281 -71017617 + MER103 DNA DNA 2 116 -50 2195 125 0 0 chr13 48728019 48728331 -71016567 + AluSx SINE Alu 1 312 0 243 140 0 0 chr13 48729456 48729506 -71015392 + (G)n Simple_repeat Simple_repeat 1 50 0 1374 168 37 0 chr13 48730321 48730565 -71014333 + AluJo SINE Alu 38 290 -22 299 262 159 19 chr13 48730566 48730673 -71014225 + MIR3 SINE MIR 81 202 -6 1831 145 33 3 chr13 48731224 48731527 -71013371 + AluJb SINE Alu 1 312 0 31 0 0 0 chr13 48731920 48731951 -71012947 + AT_rich Low_complexity Low_complexity 1 31 0 765 192 0 0 chr13 48731951 48732081 -71012817 - FLAM_C SINE Alu -12 131 2 1836 167 16 87 chr13 48732518 48732944 -71011954 - MSTD LTR MaLR 0 396 1 1622 158 16 41 chr13 48733147 48733463 -71011435 + AluJo SINE Alu 3 310 -2 575 215 98 31 chr13 48733534 48733594 -71011304 - MER104 DNA Tc2 -1724 174 119 1429 121 8 163 chr13 48733594 48733957 -71010941 + AluJb SINE Alu 1 307 -5 575 215 98 31 chr13 48733957 48734059 -71010839 - MER104 DNA Tc2 -1779 119 1 28 0 0 0 chr13 48734580 48734608 -71010290 + AT_rich Low_complexity Low_complexity 1 28 0 312 209 9 0 chr13 48734617 48734694 -71010204 + L1MA4A LINE L1 6210 6290 -10 2221 121 108 5 chr13 48734750 48735138 -71009760 - MSTA LTR MaLR 0 428 1 1053 191 39 0 chr13 48735302 48735506 -71009392 + AluJb SINE Alu 86 297 -15 341 204 186 54 chr13 48735506 48735673 -71009225 - L1ME3A LINE L1 -19 6151 5963 841 152 7 0 chr13 48735683 48735821 -71009077 - FLAM_C SINE Alu -4 139 1 1136 200 169 31 chr13 48735821 48735974 -71008924 - L1ME3A LINE L1 -196 5974 5843 1648 153 14 11 chr13 48735974 48736261 -71008637 - AluJb SINE Alu -24 288 1 1136 200 169 31 chr13 48736261 48736427 -71008471 - L1ME3A LINE L1 -327 5843 5611 344 143 14 0 chr13 48736647 48736717 -71008181 + GA-rich Low_complexity Low_complexity 2 72 0 2070 105 3 16 chr13 48738837 48739141 -71005757 - AluSg SINE Alu -10 300 1 1800 158 16 13 chr13 48739470 48739781 -71005117 - AluJb SINE Alu 0 312 1 2267 67 40 0 chr13 48740501 48740798 -71004100 + AluY SINE Alu 1 309 -2 2107 105 0 0 chr13 48740815 48741100 -71003798 + AluSq SINE Alu 1 285 -28 1871 126 16 48 chr13 48741959 48742134 -71002764 - AluSq SINE Alu -13 300 138 2050 110 3 0 chr13 48742134 48742416 -71002482 - AluSx SINE Alu -29 283 1 1871 126 16 48 chr13 48742416 48742550 -71002348 - AluSq SINE Alu -175 138 1 239 320 140 22 chr13 48742587 48742765 -71002133 - L2 LINE L2 -44 3228 3030 2144 199 24 46 chr13 48742765 48743268 -71001630 - LTR53 LTR ERVL 0 519 28 2249 93 0 6 chr13 48743274 48743586 -71001312 + AluY SINE Alu 1 310 -1 1142 112 18 0 chr13 48743586 48743755 -71001143 + AluSg/x SINE Alu 132 303 -7 258 163 23 0 chr13 48743755 48743798 -71001100 - LTR53 LTR ERVL -475 44 1 204 186 186 0 chr13 48743827 48743886 -71001012 - L2 LINE L2 -302 2970 2901 212 317 17 0 chr13 48744365 48744425 -71000473 + MER5A DNA MER1_type 128 188 -1 715 213 0 0 chr13 48744502 48744629 -71000269 - FLAM_A SINE Alu -6 127 1 2347 62 3 3 chr13 48745137 48745441 -70999457 + AluY SINE Alu 1 304 -7 2247 91 0 0 chr13 48745727 48746024 -70998874 - AluY SINE Alu -14 297 1 1174 188 0 5 chr13 48746038 48746261 -70998637 - AluJo SINE Alu -4 308 87 1154 156 72 54 chr13 48746270 48746546 -70998352 - L1MB7 LINE L1 -2 6182 5902 309 241 134 18 chr13 48747723 48747835 -70997063 - HAL1b LINE L1 -519 829 705 1844 152 7 20 chr13 48747982 48748284 -70996614 - AluSx SINE Alu -14 298 1 199 279 0 0 chr13 48748530 48748573 -70996325 + MIR SINE MIR 109 151 -57 222 386 24 24 chr13 48748767 48748894 -70996004 + L2 LINE L2 2966 3092 -180 222 275 120 42 chr13 48749177 48749396 -70995502 + L2 LINE L2 2998 3270 -2 1515 152 54 123 chr13 48749413 48749428 -70995470 + L1MD2 LINE L1 5297 5311 -1048 198 71 0 0 chr13 48749428 48749456 -70995442 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1515 152 54 123 chr13 48749456 48749623 -70995275 + L1MD2 LINE L1 5311 5488 -871 2126 129 3 6 chr13 48749623 48749934 -70994964 + AluSg SINE Alu 1 310 0 1515 152 54 123 chr13 48749934 48750273 -70994625 + L1MD2 LINE L1 5488 5849 -510 2141 129 3 0 chr13 48750273 48750582 -70994316 - AluSx SINE Alu -2 310 1 1515 152 54 123 chr13 48750582 48750808 -70994090 + L1MD2 LINE L1 5849 6089 -270 284 0 28 0 chr13 48750808 48750844 -70994054 + (CA)n Simple_repeat Simple_repeat 2 38 0 1515 152 54 123 chr13 48750844 48750960 -70993938 + L1MD2 LINE L1 6089 6211 -148 2148 97 24 3 chr13 48750960 48751249 -70993649 - AluSq SINE Alu -18 295 1 1515 152 54 123 chr13 48751249 48751387 -70993511 + L1MD2 LINE L1 6211 6358 -1 3813 181 46 36 chr13 48751707 48751908 -70992990 - L1MB3 LINE L1 -66 6117 5919 1541 160 21 108 chr13 48751908 48752289 -70992609 - MER7A DNA MER2_type 0 346 1 3813 181 46 36 chr13 48752289 48752910 -70991988 - L1MB3 LINE L1 -264 5919 5287 2350 69 0 3 chr13 48753155 48753477 -70991421 + AluY SINE Alu 1 321 0 983 108 15 0 chr13 48754472 48754602 -70990296 + AluSx SINE Alu 1 132 -180 2653 141 197 89 chr13 48754611 48755682 -70989216 - pTR5 LTR ERV1 -133 1523 5 1040 152 23 6 chr13 48755694 48755865 -70989033 + AluSx SINE Alu 119 292 -18 1609 166 38 17 chr13 48756358 48756648 -70988250 - AluJo SINE Alu -16 296 1 2210 97 0 10 chr13 48757400 48757699 -70987199 + AluSc SINE Alu 14 309 0 22 0 0 0 chr13 48757865 48757887 -70987011 + AT_rich Low_complexity Low_complexity 1 22 0 2329 98 7 0 chr13 48758141 48758436 -70986462 - AluSx SINE Alu -15 297 1 181 167 48 48 chr13 48759459 48759501 -70985397 - MER5B DNA MER1_type -135 43 2 202 288 106 0 chr13 48759519 48759585 -70985313 - MIR SINE MIR -71 191 119 189 74 0 0 chr13 48759801 48759828 -70985070 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 2050 103 0 4 chr13 48759831 48760104 -70984794 - AluSx SINE Alu -24 288 17 2200 73 7 17 chr13 48760104 48760404 -70984494 + AluY SINE Alu 15 311 0 1012 238 98 22 chr13 48760502 48761120 -70983778 + L1MD3 LINE L1 5449 6161 -5 383 234 57 91 chr13 48761192 48761234 -70983664 + L1M4 LINE L1 4384 4426 -1720 1960 125 7 17 chr13 48761234 48761530 -70983368 + AluSx SINE Alu 1 293 -19 383 234 57 91 chr13 48761530 48761752 -70983146 + L1M4 LINE L1 4426 4639 -1507 1228 130 0 0 chr13 48761757 48761926 -70982972 - AluSg/x SINE Alu -18 294 126 352 325 69 39 chr13 48761990 48762221 -70982677 + L1M4 LINE L1 4689 4926 -1220 231 254 0 0 chr13 48762279 48762342 -70982556 + L1M4 LINE L1 5265 5327 -819 2128 105 32 0 chr13 48762438 48762723 -70982175 + AluSg SINE Alu 1 294 -16 1571 132 45 69 chr13 48763651 48763940 -70980958 - AluJo SINE Alu -22 290 9 383 244 93 138 chr13 48764275 48764631 -70980267 + LTR40a LTR ERVL 1 340 -179 282 188 109 0 chr13 48764640 48764704 -70980194 + LTR40a LTR ERVL 448 518 -1 233 189 94 19 chr13 48764749 48764802 -70980096 + L2 LINE L2 2718 2774 -540 2597 62 0 0 chr13 48765283 48765588 -70979310 + AluY SINE Alu 1 305 -6 2126 126 3 0 chr13 48766196 48766489 -70978409 - AluSg SINE Alu -13 297 4 2197 109 0 22 chr13 48766721 48767032 -70977866 + AluSx SINE Alu 9 312 0 216 97 0 0 chr13 48767318 48767349 -70977549 + (TG)n Simple_repeat Simple_repeat 1 31 0 409 265 169 5 chr13 48767462 48767651 -70977247 + MIR SINE MIR 21 240 -22 23 92 0 0 chr13 48768140 48768205 -70976693 + GC_rich Low_complexity Low_complexity 1 65 0 253 286 22 0 chr13 48768332 48768423 -70976475 + (CGGGG)n Simple_repeat Simple_repeat 5 97 0 4850 69 60 22 chr13 48768913 48768996 -70975902 + PABL_A LTR ERV1 1 79 -581 2543 34 10 0 chr13 48768996 48769291 -70975607 + AluY SINE Alu 1 298 -13 4850 69 60 22 chr13 48769291 48769843 -70975055 + PABL_A LTR ERV1 79 660 0 1236 136 95 66 chr13 48769860 48770172 -70974726 + L1MB2 LINE L1 5855 6171 0 521 253 59 38 chr13 48770222 48770408 -70974490 + L2 LINE L2 3120 3309 -4 858 298 189 43 chr13 48770485 48771547 -70973351 + L2 LINE L2 1758 2974 -340 234 200 53 80 chr13 48771731 48771806 -70973092 + L2 LINE L2 3185 3257 -15 187 326 128 29 chr13 48771954 48772126 -70972772 + L3 LINE CR1 875 1063 -514 1382 153 98 29 chr13 48772332 48772607 -70972291 - AluJb SINE Alu -16 296 3 1288 154 14 32 chr13 48773545 48773766 -70971132 + MER20 DNA MER1_type 1 217 -2 2103 95 42 0 chr13 48773773 48774058 -70970840 + AluSq SINE Alu 1 297 -16 826 137 0 32 chr13 48774426 48774550 -70970348 - FLAM_A SINE Alu -10 123 4 1364 190 15 15 chr13 48774910 48775179 -70969719 + MLT1C LTR MaLR 199 467 0 4993 130 43 26 chr13 48775255 48776025 -70968873 + LTR39 LTR ERV1 1 783 0 21 36 0 0 chr13 48777250 48777278 -70967620 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr13 48778878 48778916 -70965982 + AT_rich Low_complexity Low_complexity 1 38 0 262 341 24 0 chr13 48779592 48779677 -70965221 - MIR SINE MIR -65 143 57 2318 68 0 24 chr13 48779715 48780011 -70964887 - AluY SINE Alu -20 291 3 2384 78 10 3 chr13 48780017 48780325 -70964573 - AluSg SINE Alu 0 310 1 223 333 32 21 chr13 48780877 48780970 -70963928 + MIR SINE MIR 38 131 -77 2168 87 38 10 chr13 48780985 48781341 -70963557 + AluSp SINE Alu 1 313 0 22 0 0 0 chr13 48781387 48781409 -70963489 + AT_rich Low_complexity Low_complexity 1 22 0 283 225 108 27 chr13 48781783 48781894 -70963004 + MER103 DNA DNA 2 121 -45 2280 117 0 0 chr13 48781922 48782221 -70962677 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr13 48782648 48782672 -70962226 + AT_rich Low_complexity Low_complexity 1 24 0 912 137 0 0 chr13 48782694 48782825 -70962073 + FAM SINE Alu 33 163 -22 372 200 109 36 chr13 48783426 48783536 -70961362 - L2 LINE L2 0 3313 3196 2607 55 0 3 chr13 48783585 48783894 -70961004 - AluY SINE Alu -3 308 1 24 0 0 0 chr13 48783951 48783975 -70960923 + AT_rich Low_complexity Low_complexity 1 24 0 341 272 10 0 chr13 48784161 48784264 -70960634 + L1MC4 LINE L1 7932 8035 -7 2516 87 0 0 chr13 48784830 48785140 -70959758 - AluY SINE Alu -1 310 1 2572 173 30 25 chr13 48785144 48785689 -70959209 + L1MB4 LINE L1 5417 5969 -201 2415 74 7 0 chr13 48785966 48786262 -70958636 + AluSg SINE Alu 1 298 -12 2074 125 3 3 chr13 48786825 48787112 -70957786 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr13 48787112 48787133 -70957765 + AT_rich Low_complexity Low_complexity 1 21 0 275 354 164 18 chr13 48787215 48787605 -70957293 - L2 LINE L2 -647 2667 2221 961 243 45 29 chr13 48789001 48789514 -70955384 + L1MC/D LINE L1 1006 1635 -4905 645 301 71 55 chr13 48789641 48790143 -70954755 + L1MC/D LINE L1 2427 2913 -3627 207 0 0 0 chr13 48790143 48790166 -70954732 + (CA)n Simple_repeat Simple_repeat 2 24 0 645 301 71 55 chr13 48790166 48790249 -70954649 + L1MC/D LINE L1 2913 2993 -3547 369 0 0 0 chr13 48790480 48790521 -70954377 + (CA)n Simple_repeat Simple_repeat 2 42 0 2139 141 0 0 chr13 48790545 48790849 -70954049 - AluSx SINE Alu -8 304 1 264 289 0 0 chr13 48790876 48790952 -70953946 + L1P LINE L1 2942 3017 -3129 520 124 0 62 chr13 48790955 48791052 -70953846 + L1MC1 LINE L1 6079 6169 -164 30 45 0 0 chr13 48791619 48791663 -70953235 + AT_rich Low_complexity Low_complexity 1 44 0 309 326 26 17 chr13 48791676 48791909 -70952989 + L1MC/D LINE L1 4078 4312 -2228 1158 227 64 6 chr13 48791996 48792384 -70952514 + L1MC/D LINE L1 5497 5921 -743 942 243 64 12 chr13 48792540 48792791 -70952107 + L1MC/D LINE L1 5937 6200 -2002 533 143 48 0 chr13 48793004 48793088 -70951810 - AluJo SINE Alu -175 137 50 2008 145 3 0 chr13 48793293 48793583 -70951315 - AluSx SINE Alu -21 291 1 230 268 79 55 chr13 48793605 48793769 -70951129 + L2 LINE L2 2078 2245 -1069 1307 104 6 0 chr13 48794122 48794305 -70950593 + AluSg/x SINE Alu 127 310 0 634 238 50 44 chr13 48794455 48794636 -70950262 + MIR SINE MIR 77 258 -4 416 360 81 0 chr13 48794893 48795054 -70949844 + MIR SINE MIR 20 193 -69 381 261 50 39 chr13 48796156 48796297 -70948601 + MIR SINE MIR 42 183 -60 1686 142 98 0 chr13 48797320 48797595 -70947303 + AluSx SINE Alu 1 302 -10 2118 124 7 7 chr13 48797780 48798087 -70946811 + AluSx SINE Alu 1 307 -5 2287 61 0 4 chr13 48798383 48798662 -70946236 + AluY SINE Alu 1 278 -33 180 0 0 0 chr13 48798665 48798685 -70946213 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr13 48799676 48799698 -70945200 + (A)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chr13 48799962 48799990 -70944908 + AT_rich Low_complexity Low_complexity 1 28 0 1812 161 89 83 chr13 48799993 48800135 -70944763 - L1MB8 LINE L1 -2 6176 6036 2284 103 0 0 chr13 48800135 48800426 -70944472 + AluSg1 SINE Alu 1 291 -18 2456 88 3 0 chr13 48800436 48800742 -70944156 + AluSc SINE Alu 1 307 -2 1812 161 89 83 chr13 48800742 48801152 -70943746 - L1MB8 LINE L1 -150 6028 5610 2426 63 0 13 chr13 48801152 48801452 -70943446 - AluY SINE Alu -15 296 1 1645 186 4 0 chr13 48801452 48801732 -70943166 - AluJb SINE Alu -21 291 11 271 241 25 13 chr13 48801744 48801823 -70943075 + MER113 DNA MER1_type? 408 487 -34 2063 143 7 0 chr13 48802492 48802786 -70942112 - AluSx SINE Alu -15 297 2 1748 168 0 34 chr13 48803519 48803817 -70941081 + AluJo SINE Alu 14 301 -11 2327 114 0 0 chr13 48804013 48804320 -70940578 + AluSx SINE Alu 3 309 -3 7537 115 41 33 chr13 48804451 48804799 -70940099 + HSMAR2 DNA Mariner 2 346 -956 2497 64 0 0 chr13 48804799 48805097 -70939801 + AluY SINE Alu 1 298 -13 7537 115 41 33 chr13 48805097 48806036 -70938862 + HSMAR2 DNA Mariner 346 1299 -3 288 305 225 42 chr13 48806328 48806348 -70938550 - MIR SINE MIR 0 262 247 2353 79 13 0 chr13 48806348 48806653 -70938245 + AluY SINE Alu 1 309 -2 288 305 225 42 chr13 48806653 48806845 -70938053 - MIR SINE MIR -15 247 11 368 211 73 28 chr13 48806894 48807003 -70937895 + L1ME3A LINE L1 6042 6155 -15 2153 100 47 3 chr13 48807096 48807395 -70937503 + AluSx SINE Alu 1 312 0 25 0 0 0 chr13 48807441 48807466 -70937432 + AT_rich Low_complexity Low_complexity 1 25 0 1335 32 0 0 chr13 48807466 48807622 -70937276 - L1PA3 LINE L1 -2 6153 5998 2210 92 0 14 chr13 48807632 48807925 -70936973 - AluY SINE Alu -22 289 1 1869 144 0 46 chr13 48807928 48808234 -70936664 - AluJb SINE Alu -20 292 1 2107 131 0 7 chr13 48810128 48810434 -70934464 - AluSx SINE Alu -8 304 1 451 271 125 56 chr13 48810605 48810908 -70933990 + MLT1H LTR MaLR 226 549 0 336 256 43 57 chr13 48810993 48811223 -70933675 - L1M4 LINE L1 -3135 3011 2785 675 215 70 17 chr13 48811385 48811557 -70933341 - MER119 DNA MER1_type -400 183 3 276 100 0 0 chr13 48811745 48811785 -70933113 + (TA)n Simple_repeat Simple_repeat 1 40 0 258 56 0 0 chr13 48811785 48811821 -70933077 + (GA)n Simple_repeat Simple_repeat 1 36 0 546 265 86 60 chr13 48811908 48811972 -70932926 - Charlie2 DNA MER1_type -2307 475 414 2253 88 3 3 chr13 48811972 48812267 -70932631 - AluSp SINE Alu -18 295 1 546 265 86 60 chr13 48812267 48812470 -70932428 - Charlie2 DNA MER1_type -2368 414 201 244 233 82 0 chr13 48812635 48812708 -70932190 - MER116 DNA Mariner -1 79 1 4341 216 65 35 chr13 48813336 48814396 -70930502 - L1MD2 LINE L1 0 6359 5332 525 16 0 0 chr13 48814396 48814458 -70930440 + (TG)n Simple_repeat Simple_repeat 2 63 0 824 211 0 12 chr13 48814458 48814619 -70930279 - FAM SINE Alu -16 159 1 4341 216 65 35 chr13 48814619 48815866 -70929032 - L1MD2 LINE L1 -1026 5333 3962 246 233 50 0 chr13 48816234 48816294 -70928604 + MIR SINE MIR 64 126 -136 255 230 27 40 chr13 48816489 48816563 -70928335 + MER5C DNA MER1_type 4 76 -248 4352 145 65 47 chr13 48816713 48816814 -70928084 - L1MA8 LINE L1 -4 6287 6189 1829 173 17 3 chr13 48816814 48817109 -70927789 + AluSx SINE Alu 1 299 -13 4352 145 65 47 chr13 48817109 48817228 -70927670 - L1MA8 LINE L1 -102 6189 6074 2077 148 77 0 chr13 48817228 48817566 -70927332 + THE1B LTR MaLR 1 364 0 4352 145 65 47 chr13 48817566 48818302 -70926596 - L1MA8 LINE L1 -217 6074 5285 2411 68 0 3 chr13 48818302 48818595 -70926303 - AluY SINE Alu -15 296 5 4352 145 65 47 chr13 48818595 48819067 -70925831 - L1MA8 LINE L1 -1006 5285 4823 1579 165 16 3 chr13 48819293 48819614 -70925284 - L1MA8 LINE L1 -1330 4816 4492 781 229 139 11 chr13 48820805 48821072 -70923826 + L1ME3A LINE L1 5870 6170 0 933 96 0 0 chr13 48821443 48821558 -70923340 - AluSx SINE Alu -137 175 61 331 309 107 34 chr13 48821758 48821936 -70922962 + L2 LINE L2 3005 3195 -118 21 36 0 0 chr13 48822084 48822112 -70922786 + AT_rich Low_complexity Low_complexity 1 28 0 2193 112 10 0 chr13 48822208 48822502 -70922396 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 48822594 48822615 -70922283 + AT_rich Low_complexity Low_complexity 1 21 0 2439 85 0 0 chr13 48822627 48822934 -70921964 + AluY SINE Alu 1 307 -4 1452 157 56 94 chr13 48823026 48823345 -70921553 + AluJb SINE Alu 1 307 -5 210 242 187 11 chr13 48823557 48823648 -70921250 + MIR SINE MIR 155 261 -1 2117 117 0 16 chr13 48823905 48824221 -70920677 + AluSx SINE Alu 1 311 -1 1937 153 20 3 chr13 48824254 48824555 -70920343 + AluSx SINE Alu 1 306 -6 305 262 0 12 chr13 48824964 48825048 -70919850 + LTR67 LTR ERVL 458 540 -17 248 270 11 11 chr13 48825284 48825373 -70919525 - L1M4 LINE L1 -2319 3827 3739 214 346 59 7 chr13 48826782 48826935 -70917963 + L2 LINE L2 2144 2304 -1010 407 219 42 10 chr13 48827016 48827112 -70917786 + MER58 DNA MER1_type 1 99 -2321 398 184 11 0 chr13 48827128 48827215 -70917683 + MER58 DNA MER1_type 2324 2411 -9 1047 229 106 29 chr13 48827216 48827491 -70917407 + AluJb SINE Alu 1 296 -6 2217 113 0 0 chr13 48827555 48827848 -70917050 + AluSx SINE Alu 1 293 -19 398 259 142 77 chr13 48827979 48828396 -70916502 + L2 LINE L2 2318 2761 -553 1913 146 17 0 chr13 48828472 48828766 -70916132 + AluJo SINE Alu 1 299 -13 2662 52 3 0 chr13 48829592 48829902 -70914996 + AluY SINE Alu 1 311 0 469 289 25 47 chr13 48829950 48830185 -70914713 + HAL1b LINE L1 149 378 -970 255 235 29 0 chr13 48830348 48830416 -70914482 + HAL1b LINE L1 668 737 -611 1786 147 40 25 chr13 48830432 48830758 -70914140 + MER1B DNA MER1_type 9 339 0 1968 140 7 19 chr13 48830860 48831168 -70913730 + AluSx SINE Alu 1 304 -8 1725 257 113 27 chr13 48831258 48832360 -70912538 + L1MD1 LINE L1 2980 4228 -1918 2264 90 13 0 chr13 48832360 48832660 -70912238 + AluSc SINE Alu 1 304 -5 1725 257 113 27 chr13 48832660 48832826 -70912072 + L1MD1 LINE L1 4228 4378 -1768 1674 177 0 20 chr13 48832831 48833131 -70911767 + AluJb SINE Alu 1 294 -18 1583 171 43 21 chr13 48833142 48833423 -70911475 + AluJo SINE Alu 11 297 -15 2446 212 70 22 chr13 48833423 48834537 -70910361 + L1MD1 LINE L1 4504 5704 -538 189 0 0 0 chr13 48834537 48834558 -70910340 + (CA)n Simple_repeat Simple_repeat 2 22 0 2446 212 70 22 chr13 48834558 48834718 -70910180 + L1MD1 LINE L1 5704 5855 -387 617 155 26 0 chr13 48834723 48834839 -70910059 + L1MD1 LINE L1 6108 6226 -16 338 298 126 79 chr13 48835096 48835566 -70909332 + L1MC4a LINE L1 6126 6617 -1191 202 188 58 0 chr13 48835567 48835636 -70909262 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 1428 230 40 89 chr13 48835771 48836187 -70908711 + L1MC5 LINE L1 6749 7184 -777 3444 128 29 6 chr13 48836187 48836702 -70908196 - MER1A DNA MER1_type 0 527 1 1428 230 40 89 chr13 48836702 48836986 -70907912 + L1MC5 LINE L1 7184 7404 -557 1717 164 44 17 chr13 48836986 48837284 -70907614 + AluJb SINE Alu 1 306 -6 1428 230 40 89 chr13 48837284 48837427 -70907471 + L1MC5 LINE L1 7404 7552 -409 469 87 0 14 chr13 48837427 48837496 -70907402 + MLT2B3 LTR ERVL 1 68 -486 585 204 24 22 chr13 48837596 48837800 -70907098 + MLT2B3 LTR ERVL 78 326 -189 9736 31 4 179 chr13 48838047 48839720 -70905178 + SVA Other Other 1 1379 -7 26 0 0 0 chr13 48839720 48839746 -70905152 + AT_rich Low_complexity Low_complexity 1 26 0 494 253 66 50 chr13 48840047 48840418 -70904480 + L1MEd LINE L1 892 1306 -4869 960 98 23 0 chr13 48840498 48840630 -70904268 + AluSq/x SINE Alu 1 135 -177 1778 172 10 10 chr13 48840630 48840933 -70903965 + AluJo SINE Alu 1 303 -9 252 0 0 0 chr13 48840964 48840992 -70903906 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 438 299 236 35 chr13 48841022 48842038 -70902860 + L2 LINE L2 1050 2269 -1045 495 113 65 48 chr13 48842241 48842365 -70902533 - L1MB8 LINE L1 -5 6173 6048 851 110 8 24 chr13 48842365 48842481 -70902417 - FLAM_C SINE Alu -196 116 1 377 220 0 51 chr13 48842482 48842600 -70902298 - L1MB7 LINE L1 -129 6055 5944 210 289 157 31 chr13 48842759 48842918 -70901980 + L2 LINE L2 2244 2422 -892 * 212 286 116 0 chr13 48842916 48843028 -70901870 + MIR SINE MIR 132 256 -6 373 239 134 16 chr13 48843086 48843333 -70901565 - L1MEd LINE L1 -5155 964 689 28 0 0 0 chr13 48843842 48843870 -70901028 + AT_rich Low_complexity Low_complexity 1 28 0 2349 76 10 3 chr13 48843986 48844288 -70900610 + AluSx SINE Alu 7 310 -2 289 191 0 48 chr13 48844332 48844416 -70900482 + L1MA10 LINE L1 6202 6281 -53 388 270 30 0 chr13 48844519 48844619 -70900279 + MIR SINE MIR 63 165 -97 2099 95 0 4 chr13 48844870 48845144 -70899754 + AluSg SINE Alu 27 299 -11 389 262 18 50 chr13 48845210 48845565 -70899333 - L1MEc LINE L1 -3913 2339 2003 495 319 90 32 chr13 48845648 48846024 -70898874 - L1MEc LINE L1 -5663 542 145 3652 192 83 10 chr13 48846124 48847026 -70897872 - L1MB7 LINE L1 -9 6175 5162 1718 183 33 13 chr13 48847026 48847326 -70897572 - AluJb SINE Alu -6 306 1 3652 192 83 10 chr13 48847326 48847669 -70897229 - L1MB7 LINE L1 -1022 5162 4846 228 67 0 0 chr13 48847681 48847711 -70897187 + (A)n Simple_repeat Simple_repeat 1 30 0 949 178 4 54 chr13 48847733 48847974 -70896924 - L1MB7 LINE L1 -1305 4841 4613 212 197 0 33 chr13 48847974 48848035 -70896863 + A-rich Low_complexity Low_complexity 3 61 0 566 166 106 13 chr13 48848047 48848198 -70896700 - L1MB7 LINE L1 -1540 4606 4442 267 175 48 0 chr13 48848234 48848297 -70896601 - L1MB7 LINE L1 -1696 4450 4385 792 175 32 7 chr13 48848308 48848462 -70896436 - AluJb SINE Alu -19 293 136 1414 190 0 101 chr13 48848469 48848806 -70896092 - AluJb SINE Alu -9 303 1 1452 233 22 3 chr13 48848808 48849173 -70895725 - L1MB7 LINE L1 -1780 4366 3995 * 2167 243 47 44 chr13 48849158 48849367 -70895531 + L1ME1 LINE L1 5386 5593 -573 2226 115 0 3 chr13 48849367 48849662 -70895236 + AluSx SINE Alu 1 294 -18 2167 243 47 44 chr13 48849662 48850182 -70894716 + L1ME1 LINE L1 5593 6117 -49 245 257 35 69 chr13 48850076 48850220 -70894678 + L1MA10 LINE L1 6171 6309 -25 * 1781 161 11 3 chr13 48850766 48851051 -70893847 - AluJb SINE Alu -25 287 1 2081 128 6 31 chr13 48851719 48852039 -70892859 + AluSx SINE Alu 1 312 0 954 126 0 7 chr13 48852927 48853062 -70891836 - AluSq/x SINE Alu -178 134 1 1075 115 22 28 chr13 48854179 48854350 -70890548 + MER2 DNA MER2_type 30 201 -144 1562 186 16 33 chr13 48854350 48854656 -70890242 - AluJo SINE Alu -11 301 1 535 214 67 57 chr13 48854898 48855000 -70889898 + L1MC5 LINE L1 7705 7805 -156 2178 136 109 14 chr13 48855000 48855368 -70889530 + MER57A LTR ERV1 1 403 0 535 214 67 57 chr13 48855368 48855475 -70889423 + L1MC5 LINE L1 7805 7916 -45 1315 196 13 0 chr13 48855519 48855754 -70889144 - AluJo SINE Alu -74 238 1 230 298 114 26 chr13 48855834 48855948 -70888950 + MIR3 SINE MIR 70 193 -15 779 216 24 61 chr13 48857009 48857222 -70887676 + MER58A DNA MER1_type 19 223 -1 2394 101 0 3 chr13 48857562 48857868 -70887030 - AluSx SINE Alu -7 305 1 253 302 42 69 chr13 48857948 48858137 -70886761 + L2 LINE L2 2996 3179 -93 262 288 164 46 chr13 48858163 48858382 -70886516 + MIR SINE MIR 18 262 0 580 254 0 0 chr13 48858551 48858665 -70886233 - MER81 DNA DNA 0 114 1 230 212 25 136 chr13 48858672 48858790 -70886108 - LTR67 LTR ERVL -20 537 433 1982 118 61 0 chr13 48859443 48859723 -70885175 + AluJb SINE Alu 1 297 -15 461 200 0 67 chr13 48860269 48860374 -70884524 + MER2 DNA MER2_type 1 98 -247 1467 168 121 0 chr13 48860817 48861073 -70883825 + AluJo SINE Alu 1 287 -25 24 0 0 0 chr13 48861078 48861102 -70883796 + AT_rich Low_complexity Low_complexity 1 24 0 285 215 51 38 chr13 48861207 48861286 -70883612 + MER116 DNA Mariner 1 80 0 581 175 0 0 chr13 48861337 48861440 -70883458 + L1M3 LINE L1 5716 5818 -353 352 298 124 0 chr13 48861616 48861737 -70883161 - L2 LINE L2 0 3272 3137 1046 163 0 0 chr13 48864354 48864520 -70880378 - AluSg/x SINE Alu -13 297 132 2534 65 0 0 chr13 48864520 48864826 -70880072 - AluSx SINE Alu -6 306 1 590 220 60 40 chr13 48864854 48865054 -70879844 + MIR SINE MIR 57 260 -2 426 176 0 0 chr13 48865286 48865354 -70879544 + AluJ/FLAM SINE Alu 3 70 -242 1193 150 0 16 chr13 48865401 48865594 -70879304 + AluJb SINE Alu 88 277 -35 189 0 0 0 chr13 48865595 48865616 -70879282 + (T)n Simple_repeat Simple_repeat 1 21 0 1537 206 7 3 chr13 48867061 48867348 -70877550 + AluJo SINE Alu 1 288 -24 252 221 137 0 chr13 48867351 48867446 -70877452 + MIR SINE MIR 124 231 -31 182 171 0 24 chr13 48867582 48867623 -70877275 - L2 LINE L2 -3 3310 3271 39 50 0 0 chr13 48869233 48869293 -70875605 + GC_rich Low_complexity Low_complexity 1 60 0 183 42 0 0 chr13 48869415 48869439 -70875459 + (CGG)n Simple_repeat Simple_repeat 3 26 0 185 108 27 0 chr13 48869445 48869482 -70875416 + G-rich Low_complexity Low_complexity 5 42 0 332 270 72 72 chr13 48870171 48870393 -70874505 + L2 LINE L2 3083 3304 -9 1946 70 62 37 chr13 48870646 48870953 -70873945 + AluSc SINE Alu 1 314 0 2279 99 3 10 chr13 48871130 48871432 -70873466 + AluSg SINE Alu 1 300 -10 180 0 0 0 chr13 48871504 48871524 -70873374 + (A)n Simple_repeat Simple_repeat 1 20 0 326 255 75 0 chr13 48871661 48871755 -70873143 - Charlie8 DNA MER1_type -2229 188 88 2156 115 3 32 chr13 48871902 48872215 -70872683 + AluSx SINE Alu 1 304 -8 183 309 69 57 chr13 48872909 48873084 -70871814 + L2 LINE L2 2324 2500 -814 652 93 0 0 chr13 48873306 48873392 -70871506 + AluSq SINE Alu 2 87 -225 2457 63 7 3 chr13 48873392 48873692 -70871206 + AluY SINE Alu 1 301 -10 1575 96 5 18 chr13 48873692 48873911 -70870987 + AluSq SINE Alu 73 289 -24 767 217 6 6 chr13 48874508 48874665 -70870233 + MLT1A1 LTR MaLR 1 157 -208 1001 184 0 0 chr13 48874668 48874826 -70870072 + FAM SINE Alu 14 171 -14 227 194 0 0 chr13 48874854 48874890 -70870008 + MLT1A1 LTR MaLR 172 207 -167 * 637 173 116 107 chr13 48874888 48875038 -70869860 + MLT1A1 LTR MaLR 171 299 -66 2408 53 3 0 chr13 48875038 48875356 -70869542 + AluY SINE Alu 1 319 0 637 173 116 107 chr13 48875356 48875407 -70869491 + MLT1A1 LTR MaLR 299 348 -17 207 139 0 0 chr13 48875428 48875464 -70869434 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 21 95 0 0 chr13 48876996 48877059 -70867839 + AT_rich Low_complexity Low_complexity 1 63 0 318 333 93 13 chr13 48877090 48877240 -70867658 + MIR3 SINE MIR 19 180 -28 973 165 0 13 chr13 48877536 48877694 -70867204 + FRAM SINE Alu 1 156 -10 296 347 33 20 chr13 48877960 48878110 -70866788 + L2 LINE L2 3162 3313 0 2116 90 59 0 chr13 48878192 48878482 -70866416 + AluSc SINE Alu 3 309 0 1135 130 0 2 chr13 48878562 48878835 -70866063 + AluSx SINE Alu 9 312 0 1069 131 6 6 chr13 48878838 48879014 -70865884 + L1PA10 LINE L1 5989 6164 -4 568 301 6 0 chr13 48879064 48879240 -70865658 - MIR SINE MIR 0 262 86 2213 103 34 0 chr13 48879896 48880188 -70864710 - AluSq SINE Alu -10 303 2 2034 110 0 0 chr13 48880189 48880452 -70864446 - AluSx SINE Alu -15 297 35 2277 104 0 0 chr13 48880656 48880953 -70863945 + AluSg1 SINE Alu 1 297 -12 322 200 31 0 chr13 48881079 48881091 -70863807 + MER3 DNA MER1_type 37 50 -159 675 176 59 98 chr13 48881091 48881188 -70863710 - MER3 DNA MER1_type -1 208 122 1451 135 67 74 chr13 48881188 48881485 -70863413 + AluJo SINE Alu 1 295 -17 675 176 59 98 chr13 48881485 48881591 -70863307 - MER3 DNA MER1_type -87 122 13 190 347 11 0 chr13 48881645 48881740 -70863158 + MIR SINE MIR 53 148 -114 2403 105 0 3 chr13 48881741 48882087 -70862811 + AluSx SINE Alu 1 345 0 2253 100 0 10 chr13 48882218 48882517 -70862381 + AluSx SINE Alu 1 296 -16 2253 109 0 10 chr13 48883348 48883659 -70861239 + AluSg1 SINE Alu 1 308 -1 877 255 64 10 chr13 48884030 48884267 -70860631 - MIR SINE MIR 0 262 16 267 234 19 103 chr13 48884517 48884624 -70860274 + MLT1K LTR MaLR 429 526 -62 409 255 87 91 chr13 48884688 48884986 -70859912 + MLT1K LTR MaLR 183 479 -109 317 175 30 24 chr13 48884993 48885084 -70859814 - MLT1F1 LTR MaLR -3 592 485 493 287 46 69 chr13 48885089 48885392 -70859506 - MLT1I LTR MaLR -7 402 107 2394 78 10 3 chr13 48885557 48885853 -70859045 - AluSq SINE Alu -15 298 1 963 249 118 33 chr13 48886648 48887013 -70857885 - MLT1L LTR MaLR -26 589 194 853 89 9 0 chr13 48887029 48887141 -70857757 + AluSg/x SINE Alu 179 291 -19 1474 123 30 30 chr13 48887147 48887382 -70857516 - MER46A DNA MER2_type 0 236 2 463 273 8 8 chr13 48887741 48887869 -70857029 - MIR SINE MIR -112 150 23 202 310 0 0 chr13 48888612 48888683 -70856215 - MIR SINE MIR -49 213 143 21 0 0 0 chr13 48888687 48888708 -70856190 + AT_rich Low_complexity Low_complexity 1 21 0 727 169 7 44 chr13 48888714 48888850 -70856048 + AluJo SINE Alu 6 136 -176 206 349 58 0 chr13 48888897 48888983 -70855915 - MIR SINE MIR -66 142 52 353 131 16 0 chr13 48889359 48889420 -70855478 + MER5A DNA MER1_type 42 103 -86 1985 201 19 17 chr13 48890933 48891346 -70853552 + MLT2D LTR ERVL 1 414 0 341 200 95 95 chr13 48892035 48892140 -70852758 + MLT1J2 LTR MaLR 346 450 0 2396 78 0 3 chr13 48892217 48892512 -70852386 + AluSg SINE Alu 1 294 -16 379 194 140 0 chr13 48892659 48892752 -70852146 - MER91C DNA MER1_type -34 106 1 567 123 18 18 chr13 48893109 48893223 -70851675 + CT-rich Low_complexity Low_complexity 4 117 0 2158 111 6 35 chr13 48893228 48893543 -70851355 - AluSx SINE Alu -6 306 1 1786 208 75 73 chr13 48893568 48894007 -70850891 - L1MC5 LINE L1 -39 7922 7480 221 0 35 0 chr13 48894007 48894036 -70850862 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 1786 208 75 73 chr13 48894036 48894292 -70850606 - L1MC5 LINE L1 -481 7480 7226 1979 184 36 69 chr13 48894342 48894817 -70850081 - L1MC4 LINE L1 -733 7228 6739 186 43 0 0 chr13 48894817 48894840 -70850058 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1624 166 7 35 chr13 48894848 48895008 -70849890 - AluJb SINE Alu -30 282 132 2051 53 7 64 chr13 48895008 48895291 -70849607 - AluY SINE Alu -11 300 34 1624 166 7 35 chr13 48895291 48895420 -70849478 - AluJb SINE Alu -180 132 1 1979 184 36 69 chr13 48895420 48895516 -70849382 - L1MC4 LINE L1 -1229 6732 6697 1899 187 9 11 chr13 48895664 48895917 -70848981 - MER7A DNA MER2_type -2693 345 94 2173 89 22 26 chr13 48895917 48896230 -70848668 + AluSq SINE Alu 1 312 -1 1899 187 9 11 chr13 48896230 48896324 -70848574 - MER7A DNA MER2_type -2944 94 1 2535 54 0 7 chr13 48896514 48896812 -70848086 - AluY SINE Alu -15 296 1 370 288 72 7 chr13 48898190 48898343 -70846555 + MIR SINE MIR 30 192 -70 1493 209 85 79 chr13 48898393 48898935 -70845963 + MER66A LTR ERV1 97 478 0 4160 189 67 23 chr13 48899080 48901014 -70843884 + MER66A-int LTR ERV1 65 2169 -4507 * 9161 190 82 106 chr13 48900999 48902032 -70842866 + MER66A-int LTR ERV1 2333 3390 -3286 1944 135 0 0 chr13 48902032 48902359 -70842539 + AluSq SINE Alu 1 327 0 9161 190 82 106 chr13 48902359 48902553 -70842345 + MER66A-int LTR ERV1 3390 3587 -3089 1689 168 14 0 chr13 48902553 48902833 -70842065 + AluJb SINE Alu 1 284 -28 360 0 0 0 chr13 48902833 48902873 -70842025 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 9161 190 82 106 chr13 48902873 48903371 -70841527 + MER66A-int LTR ERV1 3586 4095 -2581 2112 108 3 13 chr13 48903371 48903685 -70841213 + AluSx SINE Alu 2 312 0 9161 190 82 106 chr13 48903685 48903988 -70840910 + MER66A-int LTR ERV1 4095 4404 -2272 2336 88 0 0 chr13 48903988 48904293 -70840605 - AluSc SINE Alu -4 305 1 9161 190 82 106 chr13 48904293 48904932 -70839966 + MER66A-int LTR ERV1 4404 4941 -1735 1611 162 31 45 chr13 48904921 48905179 -70839719 + MER66A-int LTR ERV1 6390 6645 -31 * 2283 98 0 0 chr13 48905179 48905484 -70839414 + AluSq SINE Alu 1 305 -8 1611 162 31 45 chr13 48905484 48905515 -70839383 + MER66A-int LTR ERV1 6645 6675 -1 1287 200 108 53 chr13 48905583 48906004 -70838894 + MER66A LTR ERV1 99 462 -16 1589 121 4 12 chr13 48906011 48906260 -70838638 + AluJb SINE Alu 58 304 -8 2165 115 3 0 chr13 48906262 48906574 -70838324 + AluSq SINE Alu 1 313 0 2207 142 65 70 chr13 48906801 48907259 -70837639 - MER31B LTR ERV1 -8 458 3 224 239 0 0 chr13 48908212 48908258 -70836640 + T-rich Low_complexity Low_complexity 4 49 0 428 301 46 20 chr13 48908684 48908837 -70836061 - L1 LINE L1 -2678 3468 3312 33 0 0 0 chr13 48909116 48909149 -70835749 + AT_rich Low_complexity Low_complexity 1 33 0 1261 85 0 6 chr13 48909149 48909313 -70835585 - AluSq SINE Alu -150 163 1 2592 90 16 19 chr13 48909385 48909750 -70835148 + THE1B LTR MaLR 1 364 0 389 283 66 0 chr13 48909794 48909900 -70834998 + MIR3 SINE MIR 50 162 -46 * 667 226 75 0 chr13 48909898 48910044 -70834854 - MIR SINE MIR 0 262 106 2143 109 3 0 chr13 48910637 48910939 -70833959 + AluSx SINE Alu 1 303 -9 1392 170 130 4 chr13 48911028 48911281 -70833617 - AluJo SINE Alu -14 288 4 2009 134 0 3 chr13 48911652 48911951 -70832947 + AluSx SINE Alu 1 298 -14 4304 156 84 82 chr13 48911966 48912542 -70832356 - L1MC3 LINE L1 -1 7784 7211 258 323 0 0 chr13 48912542 48912635 -70832263 - MLT1F1 LTR MaLR -442 125 33 4304 156 84 82 chr13 48912635 48912767 -70832131 - L1MC3 LINE L1 -574 7211 7081 2162 116 0 0 chr13 48912767 48913070 -70831828 - AluSx SINE Alu -9 303 1 4304 156 84 82 chr13 48913070 48913422 -70831476 - L1MC3 LINE L1 -704 7081 6629 404 242 166 6 chr13 48913760 48913917 -70830981 + LTR33A LTR ERVL 298 479 -44 186 43 0 0 chr13 48914767 48914790 -70830108 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 777 128 0 0 chr13 48914802 48914911 -70829987 - FLAM_C SINE Alu -33 110 2 2219 75 24 0 chr13 48914923 48915216 -70829682 - AluY SINE Alu -11 300 1 433 239 85 85 chr13 48915798 48916057 -70828841 + MER102a DNA MER1_type 55 313 -17 348 24 0 0 chr13 48916119 48916160 -70828738 + (CA)n Simple_repeat Simple_repeat 2 42 0 303 262 145 29 chr13 48916173 48916345 -70828553 + L2 LINE L2 2870 3061 -211 771 150 277 33 chr13 48916474 48916687 -70828211 - ORSL DNA AcHobo -4 271 7 1841 146 0 10 chr13 48916687 48916981 -70827917 + AluSx SINE Alu 1 291 -21 684 288 54 21 chr13 48917045 48917285 -70827613 - MLT1J LTR MaLR -261 250 3 721 235 24 18 chr13 48917312 48917482 -70827416 - MLT1F LTR MaLR -353 189 19 667 254 177 4 chr13 48917790 48918038 -70826860 - L2 LINE L2 -56 3257 2967 1077 145 0 6 chr13 48918038 48918204 -70826694 + AluSp SINE Alu 1 165 -148 2023 115 30 0 chr13 48918489 48918784 -70826114 + AluSx SINE Alu 1 304 -8 331 281 117 12 chr13 48918784 48918955 -70825943 - L2 LINE L2 -1808 1506 1318 493 191 161 56 chr13 48918996 48919158 -70825740 - MER5A DNA MER1_type 0 189 11 1349 173 38 125 chr13 48919172 48919572 -70825326 + MLT1A1 LTR MaLR 1 365 0 423 288 245 0 chr13 48919592 48919825 -70825073 - L2 LINE L2 -2058 1256 967 685 111 0 10 chr13 48919827 48919926 -70824972 + MER4A LTR ERV1 1 98 -566 1629 126 3 83 chr13 48919926 48920260 -70824638 + MER4A LTR ERV1 261 643 -21 1010 299 107 13 chr13 48920264 48920658 -70824240 - L2 LINE L2 -2352 962 532 451 289 101 7 chr13 48920716 48920865 -70824033 - L2 LINE L2 -547 2767 2605 1013 147 18 6 chr13 48920868 48921038 -70823860 + MER5A DNA MER1_type 5 176 -13 2141 107 0 7 chr13 48921615 48921925 -70822973 - AluSg1 SINE Alu -1 308 1 430 313 82 13 chr13 48922282 48922509 -70822389 - MIR SINE MIR 0 262 15 2149 125 0 0 chr13 48922861 48923172 -70821726 + AluSx SINE Alu 1 311 -1 2156 63 16 16 chr13 48923230 48923533 -70821365 - AluY SINE Alu -8 303 1 1276 50 12 0 chr13 48923812 48923972 -70820926 + AluY SINE Alu 1 162 -149 225 0 0 0 chr13 48923987 48924012 -70820886 + (A)n Simple_repeat Simple_repeat 1 25 0 321 245 174 11 chr13 48924737 48924849 -70820049 + MIR SINE MIR 36 151 -72 273 236 0 0 chr13 48925323 48925378 -70819520 - L2 LINE L2 -8 3264 3210 1795 119 22 35 chr13 48925412 48925724 -70819174 + AluJo SINE Alu 1 308 -4 692 213 21 0 chr13 48925884 48926025 -70818873 - MLT1B LTR MaLR -246 144 1 897 147 0 0 chr13 48926038 48926167 -70818731 - FLAM_C SINE Alu -4 129 1 334 203 14 212 chr13 48926229 48926292 -70818606 - MER5B DNA MER1_type 0 178 104 2205 101 0 0 chr13 48926292 48926590 -70818308 + AluSx SINE Alu 1 298 -14 334 203 14 212 chr13 48926590 48926748 -70818150 - MER5B DNA MER1_type -74 104 1 2124 117 3 0 chr13 48926884 48927191 -70817707 - AluSg SINE Alu -2 308 1 704 279 107 95 chr13 48927808 48928403 -70816495 + L1M2 LINE L1 899 1485 -4731 1713 178 13 3 chr13 48928403 48928701 -70816197 + AluJb SINE Alu 1 301 -11 704 279 107 95 chr13 48928701 48928801 -70816097 + L1M2 LINE L1 1485 1582 -4634 1973 119 0 17 chr13 48928801 48929103 -70815795 - AluSx SINE Alu -15 297 1 704 279 107 95 chr13 48929103 48929154 -70815744 + L1M2 LINE L1 1582 1631 -4585 1437 212 6 10 chr13 48929154 48929465 -70815433 + AluJo SINE Alu 1 310 -2 704 279 107 95 chr13 48929465 48929555 -70815343 + L1M2 LINE L1 1631 1837 -4379 2047 117 0 0 chr13 48929557 48929885 -70815013 - AluSc SINE Alu 0 328 1 1983 129 0 3 chr13 48929887 48930181 -70814717 - AluSx SINE Alu -19 293 1 308 273 69 12 chr13 48930583 48930866 -70814032 + L1ME3 LINE L1 2471 2765 -3775 1362 171 19 31 chr13 48930903 48931160 -70813738 + AluJb SINE Alu 1 254 -58 1213 247 83 53 chr13 48931223 48931434 -70813464 + L1ME3 LINE L1 5613 5816 -740 2339 73 0 3 chr13 48931434 48931734 -70813164 + AluY SINE Alu 3 301 -10 1213 247 83 53 chr13 48931734 48931892 -70813006 + L1ME3 LINE L1 5816 5968 -588 1564 197 123 42 chr13 48931892 48932058 -70812840 + MLT1C LTR MaLR 1 152 -315 2188 109 3 0 chr13 48932058 48932360 -70812538 + AluSq SINE Alu 1 303 -10 1564 197 123 42 chr13 48932360 48932625 -70812273 + MLT1C LTR MaLR 152 467 0 1213 247 83 53 chr13 48932625 48932847 -70812051 + L1ME3 LINE L1 5968 6235 -321 2719 137 41 33 chr13 48932847 48933335 -70811563 - LTR22B LTR ERVK 0 492 1 1213 247 83 53 chr13 48933335 48933441 -70811457 + L1ME3 LINE L1 6235 6336 -220 2218 103 0 0 chr13 48933808 48934109 -70810789 - AluSq SINE Alu -10 303 3 2537 55 0 0 chr13 48934704 48935015 -70809883 - AluY SINE Alu 0 311 1 1024 316 91 32 chr13 48936212 48936687 -70808211 + ERVL LTR ERVL 1338 1840 -3924 337 219 49 49 chr13 48936689 48936771 -70808127 + FRAM/FAM SINE Alu 1 81 -85 636 179 36 100 chr13 48936771 48936807 -70808091 + L1M4 LINE L1 4965 5002 -1144 2068 98 3 20 chr13 48936807 48937112 -70807786 + AluSg SINE Alu 5 304 -6 636 179 36 100 chr13 48937112 48937253 -70807645 + L1M4 LINE L1 5002 5124 -1022 2054 124 13 0 chr13 48937253 48937559 -70807339 + AluSx SINE Alu 1 310 -2 636 179 36 100 chr13 48937559 48937631 -70807267 + L1M4 LINE L1 5124 5199 -947 1183 180 0 5 chr13 48937634 48937840 -70807058 + AluJo SINE Alu 1 205 -107 876 261 23 29 chr13 48937861 48938167 -70806731 + L1ME2 LINE L1 5852 6155 -9 182 235 161 25 chr13 48938264 48938345 -70806553 + L2 LINE L2 3047 3138 -175 345 169 0 0 chr13 48938353 48938412 -70806486 - MSTD LTR MaLR -12 384 326 1916 142 10 0 chr13 48938412 48938700 -70806198 + AluJb SINE Alu 1 291 -21 297 75 0 0 chr13 48938718 48938758 -70806140 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 1103 51 11 62 chr13 48938767 48938945 -70805953 + MER11A LTR ERVK 1 264 -1002 1705 85 0 30 chr13 48938945 48939181 -70805717 - AluY SINE Alu -82 229 1 437 214 53 121 chr13 48939570 48939809 -70805089 + L1ME3A LINE L1 5797 6051 -119 2198 85 0 7 chr13 48939809 48940103 -70804795 - AluSc SINE Alu -17 292 1 437 214 53 121 chr13 48940103 48940116 -70804782 + L1ME3A LINE L1 6051 6063 -107 990 139 0 61 chr13 48940116 48940296 -70804602 - L1MB5 LINE L1 -6 6168 6000 437 214 53 121 chr13 48940296 48940347 -70804551 + L1ME3A LINE L1 6063 6157 -13 922 284 80 69 chr13 48940359 48941060 -70803838 - L2 LINE L2 -2282 1032 261 1388 198 171 20 chr13 48941388 48941732 -70803166 + MSTD LTR MaLR 1 396 0 2149 92 0 0 chr13 48941831 48942136 -70802762 + AluY SINE Alu 1 305 0 3419 201 57 22 chr13 48942204 48943064 -70801834 + L1ME1 LINE L1 5221 6108 -58 738 238 0 0 chr13 48943069 48943216 -70801682 + FRAM SINE Alu 5 151 -25 1400 187 26 4 chr13 48943223 48943491 -70801407 + AluJo SINE Alu 2 275 -37 297 0 0 0 chr13 48943491 48943524 -70801374 + (TC)n Simple_repeat Simple_repeat 1 33 0 198 118 0 0 chr13 48943523 48943557 -70801341 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 353 230 180 0 chr13 48943557 48943657 -70801241 + MIR SINE MIR 140 257 -5 3861 147 20 45 chr13 48943672 48944255 -70800643 - L1MB3 LINE L1 -9 6174 5613 2045 130 0 0 chr13 48944255 48944548 -70800350 - AluSx SINE Alu -19 293 1 3861 147 20 45 chr13 48944548 48944713 -70800185 - L1MB3 LINE L1 -570 5613 5445 247 250 134 93 chr13 48944737 48944909 -70799989 + Charlie8 DNA MER1_type 1 179 -2238 198 0 0 0 chr13 48945021 48945043 -70799855 + (CAGCT)n Simple_repeat Simple_repeat 3 24 0 198 91 0 0 chr13 48945516 48945549 -70799349 + (A)n Simple_repeat Simple_repeat 1 33 0 339 175 0 32 chr13 48945601 48945664 -70799234 - L2 LINE L2 -16 3256 3196 534 220 0 85 chr13 48945800 48945941 -70798957 - MER5A DNA MER1_type 0 189 61 1011 171 6 0 chr13 48945945 48946120 -70798778 - FRAM SINE Alu 0 176 1 517 117 13 0 chr13 48946120 48946197 -70798701 - MER5A DNA MER1_type -111 78 1 304 161 71 0 chr13 48946975 48947031 -70797867 - MER5B DNA MER1_type 0 178 119 4622 147 48 16 chr13 48947036 48947865 -70797033 + L1MC3 LINE L1 6919 7774 -11 277 239 204 80 chr13 48947933 48948046 -70796852 - MER5B DNA MER1_type -48 130 4 2190 123 0 0 chr13 48948161 48948471 -70796427 - AluSx SINE Alu -2 310 1 1322 167 50 89 chr13 48948495 48948894 -70796004 + MLT1B LTR MaLR 2 467 0 3619 167 28 56 chr13 48949355 48949425 -70795473 - L1MB8 LINE L1 -1 6177 6107 1803 167 10 10 chr13 48949425 48949737 -70795161 + AluJb SINE Alu 1 312 0 3619 167 28 56 chr13 48949737 48949898 -70795000 - L1MB8 LINE L1 -71 6107 5943 2166 110 0 7 chr13 48949898 48950206 -70794692 - AluSx SINE Alu -6 306 1 3619 167 28 56 chr13 48950206 48950771 -70794127 - L1MB8 LINE L1 -235 5943 5403 2213 151 30 63 chr13 48950911 48951029 -70793869 + LOR1b LTR ERV1 45 165 -296 2393 76 0 0 chr13 48951029 48951319 -70793579 + AluY SINE Alu 9 298 -13 2213 151 30 63 chr13 48951319 48951631 -70793267 + LOR1b LTR ERV1 165 461 0 2238 128 42 8 chr13 48951631 48951990 -70792908 + LOR1b-int LTR ERV1 1 371 -7749 374 39 19 0 chr13 48951993 48952045 -70792853 + (TG)n Simple_repeat Simple_repeat 2 54 0 14929 94 74 46 chr13 48952045 48952407 -70792491 + LOR1-int LTR ERV1 208 558 -7562 2056 119 0 45 chr13 48952407 48952573 -70792325 - AluSg SINE Alu -13 297 150 2547 47 0 7 chr13 48952573 48952870 -70792028 - AluY SINE Alu -16 295 1 2056 119 0 45 chr13 48952870 48953014 -70791884 - AluSg SINE Alu -160 150 1 14929 94 74 46 chr13 48953014 48953707 -70791191 + LOR1-int LTR ERV1 558 1230 -6890 1835 120 88 7 chr13 48953707 48953991 -70790907 + AluSg SINE Alu 1 307 -3 14929 94 74 46 chr13 48953991 48955047 -70789851 + LOR1-int LTR ERV1 1230 2407 -5713 1887 143 58 0 chr13 48955047 48955340 -70789558 - AluSg SINE Alu 0 310 1 14929 94 74 46 chr13 48955340 48955767 -70789131 + LOR1-int LTR ERV1 2407 2820 -5300 236 200 0 0 chr13 48955912 48955952 -70788946 - MER5A DNA MER1_type -141 48 9 32179 107 16 66 chr13 48956011 48957608 -70787290 + L1PA8 LINE L1 9 1684 -4488 2226 126 0 0 chr13 48957608 48957909 -70786989 + AluSg SINE Alu 1 301 -9 32179 107 16 66 chr13 48957909 48962800 -70782098 + L1PA8 LINE L1 1684 6164 -8 2088 80 44 87 chr13 48962806 48962989 -70781909 + LOR1-int LTR ERV1 2816 3005 -5115 258 32 0 0 chr13 48962989 48963020 -70781878 + (TTA)n Simple_repeat Simple_repeat 1 31 0 1713 152 7 18 chr13 48963028 48963305 -70781593 - AluSx SINE Alu -38 274 1 2088 80 44 87 chr13 48963305 48963497 -70781401 + LOR1-int LTR ERV1 3012 3183 -4937 2236 86 21 0 chr13 48963497 48963787 -70781111 + AluSx SINE Alu 2 297 -15 9336 92 72 34 chr13 48963787 48963900 -70780998 + LOR1-int LTR ERV1 3941 4048 -4072 2317 94 3 3 chr13 48963900 48964199 -70780699 + AluY SINE Alu 1 299 -12 9336 92 72 34 chr13 48964199 48964874 -70780024 + LOR1-int LTR ERV1 4048 4696 -3424 230 0 33 0 chr13 48964874 48964904 -70779994 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1736 154 4 0 chr13 48964907 48965160 -70779738 - AluSx SINE Alu -31 281 28 9336 92 72 34 chr13 48965160 48965892 -70779006 + LOR1-int LTR ERV1 4697 5524 -2596 1827 103 44 4 chr13 48965872 48966144 -70778754 + LOR1-int LTR ERV1 5782 6064 -2056 * 412 153 42 0 chr13 48966143 48966215 -70778683 + LOR1-int LTR ERV1 8030 8104 -16 * 1860 162 7 0 chr13 48966235 48966525 -70778373 - AluSx SINE Alu -20 292 1 643 102 0 11 chr13 48966558 48966646 -70778252 - HY4 scRNA scRNA -3 90 4 4235 116 54 18 chr13 48966647 48967329 -70777569 + Tigger3b DNA MER2_type 280 986 -245 2816 194 18 29 chr13 48970325 48970878 -70774020 - MER74A LTR ERVL -9 549 3 796 181 289 17 chr13 48971012 48971244 -70773654 - SATR1 Satellite Satellite -18 452 158 1124 277 30 38 chr13 48971244 48971612 -70773286 - MLT1J LTR MaLR -146 365 1 1960 120 3 40 chr13 48971765 48972066 -70772832 - AluSx SINE Alu -22 290 1 1758 152 0 48 chr13 48972190 48972500 -70772398 - AluJb SINE Alu -16 296 2 2082 141 3 0 chr13 48973103 48973407 -70771491 + AluSq SINE Alu 1 305 -8 2025 114 47 0 chr13 48973540 48973837 -70771061 - AluSq SINE Alu 0 313 3 1067 177 6 0 chr13 48974061 48974225 -70770673 - FAM SINE Alu -10 165 1 390 42 0 0 chr13 48974824 48974872 -70770026 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 1225 208 77 0 chr13 48974872 48975132 -70769766 - AluJb SINE Alu -32 280 1 2125 102 20 0 chr13 48975407 48975700 -70769198 + AluSp SINE Alu 1 299 -14 637 187 8 24 chr13 48975762 48975885 -70769013 + AluJo/FLAM SINE Alu 1 121 -191 1936 115 3 30 chr13 48975887 48976057 -70768841 - AluSq SINE Alu -14 299 139 2109 121 24 0 chr13 48976057 48976354 -70768544 - AluSg SINE Alu -6 304 1 1936 115 3 30 chr13 48976354 48976478 -70768420 - AluSq SINE Alu -174 139 13 1362 183 260 24 chr13 48976530 48977129 -70767769 + SATR1 Satellite Satellite 1 457 -1776 2360 86 3 3 chr13 48977129 48977432 -70767466 - AluY SINE Alu -8 303 1 1362 183 260 24 chr13 48977432 48978015 -70766883 + SATR1 Satellite Satellite 457 1836 -397 1747 161 3 14 chr13 48978769 48979060 -70765838 + AluJb SINE Alu 1 288 -24 1037 126 0 38 chr13 48979074 48979233 -70765665 + FAM SINE Alu 4 156 -19 546 269 164 24 chr13 48979275 48979483 -70765415 + MIR SINE MIR 9 245 -17 1487 152 9 84 chr13 48979840 48980023 -70764875 - AluJo SINE Alu -14 298 148 2401 54 0 7 chr13 48980023 48980318 -70764580 - AluY SINE Alu -18 293 1 1487 152 9 84 chr13 48980318 48980456 -70764442 - AluJo SINE Alu -164 148 1 2123 89 44 10 chr13 48980714 48981007 -70763891 - AluSc SINE Alu -6 303 1 2471 81 0 0 chr13 48981308 48981618 -70763280 + AluY SINE Alu 1 310 -1 1687 196 47 28 chr13 48981816 48982138 -70762760 + MER74A LTR ERVL 189 520 -38 1632 205 126 14 chr13 48982138 48982494 -70762404 + MSTD LTR MaLR 1 396 0 1687 196 47 28 chr13 48982494 48982534 -70762364 + MER74A LTR ERVL 520 558 0 327 317 109 35 chr13 48982536 48982738 -70762160 - L3 LINE CR1 -114 1463 1247 2565 58 0 6 chr13 48982987 48983298 -70761600 - AluY SINE Alu -2 309 1 237 223 74 91 chr13 48983299 48983327 -70761571 - L3 LINE CR1 -463 1114 1087 2006 130 0 23 chr13 48983327 48983628 -70761270 + AluSx SINE Alu 2 295 -17 237 223 74 91 chr13 48983628 48983720 -70761178 - L3 LINE CR1 -490 1087 996 2285 97 3 0 chr13 48983817 48984115 -70760783 - AluSp SINE Alu -14 299 1 1403 158 70 40 chr13 48984242 48984514 -70760384 - AluJb SINE Alu -20 292 13 2041 86 0 96 chr13 48984781 48985105 -70759793 - AluY SINE Alu -18 293 1 6936 131 34 51 chr13 48985129 48985411 -70759487 + Tigger3b DNA MER2_type 1 286 -2742 2078 127 3 0 chr13 48985411 48985702 -70759196 - AluSx SINE Alu -20 292 1 6936 131 34 51 chr13 48985702 48985724 -70759174 + Tigger3b DNA MER2_type 286 307 -2721 715 85 0 11 chr13 48985724 48985818 -70759080 - HY4 scRNA scRNA 0 93 1 6936 131 34 51 chr13 48985818 48986230 -70758668 + Tigger3b DNA MER2_type 307 725 -2303 2471 69 0 7 chr13 48986230 48986533 -70758365 - AluSc SINE Alu -8 301 1 6936 131 34 51 chr13 48986533 48987067 -70757831 + Tigger3b DNA MER2_type 725 1231 0 2486 50 3 10 chr13 48988235 48988537 -70756361 - AluY SINE Alu -11 300 1 1965 153 78 21 chr13 48988545 48988559 -70756339 - L1MC3 LINE L1 -1 7784 7772 2116 115 3 3 chr13 48988559 48988855 -70756043 - AluSx SINE Alu -16 296 1 1965 153 78 21 chr13 48988855 48989264 -70755634 - L1MC3 LINE L1 -13 7772 7337 2251 100 7 0 chr13 48989452 48989743 -70755155 + AluSc SINE Alu 1 293 -16 23 33 0 0 chr13 48989743 48989773 -70755125 + AT_rich Low_complexity Low_complexity 1 30 0 485 182 50 10 chr13 48990124 48990223 -70754675 - MER5A DNA MER1_type -85 104 2 2299 119 0 0 chr13 48990227 48990537 -70754361 + AluSg SINE Alu 1 310 0 257 279 103 44 chr13 48990577 48990599 -70754299 - MIR SINE MIR -11 251 232 2173 81 0 14 chr13 48990599 48990912 -70753986 - AluY SINE Alu 0 310 2 257 279 103 44 chr13 48990912 48991024 -70753874 - MIR SINE MIR -30 232 108 21 0 0 0 chr13 48992309 48992330 -70752568 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 48992464 48992485 -70752413 + AT_rich Low_complexity Low_complexity 1 21 0 674 262 35 0 chr13 48992576 48992778 -70752120 - L1MD3 LINE L1 0 7995 7787 1899 213 23 19 chr13 48992781 48993213 -70751685 + L1ME1 LINE L1 5638 6071 -95 254 341 32 0 chr13 48993319 48993442 -70751456 + L1ME3 LINE L1 6027 6153 -9 215 319 33 22 chr13 48993457 48993548 -70751350 - L2 LINE L2 -1379 1935 1844 543 83 52 42 chr13 48993608 48993704 -70751194 + L1PA13 LINE L1 6067 6163 0 187 292 69 0 chr13 48994017 48994089 -70750809 - L2 LINE L2 -1880 1434 1358 2455 68 0 0 chr13 48994171 48994490 -70750408 - AluY SINE Alu 0 319 1 1605 175 6 32 chr13 48995130 48995444 -70749454 - AluJb SINE Alu -1 311 6 1772 119 112 7 chr13 48995488 48995765 -70749133 - AluSg SINE Alu -4 306 1 2143 115 0 10 chr13 48995775 48996098 -70748800 - AluSx SINE Alu 0 312 6 2065 112 3 62 chr13 48996222 48996364 -70748534 + AluSx SINE Alu 1 150 -162 2263 100 0 0 chr13 48996364 48996655 -70748243 + AluSc SINE Alu 15 305 -4 2065 112 3 62 chr13 48996655 48996833 -70748065 + AluSx SINE Alu 150 302 -10 827 165 13 106 chr13 48996908 48997145 -70747753 + L1MC5 LINE L1 7697 7911 -50 229 146 0 125 chr13 48997150 48997198 -70747700 + FRAM SINE Alu 1 32 -135 939 132 0 0 chr13 48997199 48997335 -70747563 + AluJo/FRAM SINE Alu 145 280 -32 332 0 47 0 chr13 48997336 48997379 -70747519 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2351 113 0 0 chr13 48997765 48998076 -70746822 + AluSx SINE Alu 1 311 -1 2892 97 8 3 chr13 48998136 48998509 -70746389 + THE1C LTR MaLR 1 375 0 80 21 0 0 chr13 48999343 48999437 -70745461 + AT_rich Low_complexity Low_complexity 1 94 0 967 192 98 0 chr13 48999478 48999671 -70745227 - MIR SINE MIR -42 220 9 214 319 0 42 chr13 48999909 48999981 -70744917 - MIR3 SINE MIR -31 177 109 2297 109 0 0 chr13 49000327 49000630 -70744268 - AluSx SINE Alu -9 303 1 716 147 184 7 chr13 49000737 49000873 -70744025 - FRAM SINE Alu -10 166 7 2497 60 0 13 chr13 49001071 49001373 -70743525 - AluSp SINE Alu -15 298 1 1606 166 14 38 chr13 49001374 49001543 -70743355 - AluJb SINE Alu -30 282 121 216 97 0 0 chr13 49001543 49001574 -70743324 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1606 166 14 38 chr13 49001574 49001693 -70743205 - AluJb SINE Alu -191 121 1 472 173 113 125 chr13 49001726 49001781 -70743117 + MIR SINE MIR 97 151 -111 2235 111 0 7 chr13 49001781 49002081 -70742817 + AluSq SINE Alu 4 335 0 307 0 0 0 chr13 49002081 49002115 -70742783 + (TAA)n Simple_repeat Simple_repeat 2 180 0 472 173 113 125 chr13 49002115 49002199 -70742699 + MIR SINE MIR 151 239 -23 2213 100 0 3 chr13 49002199 49002488 -70742410 + AluSg SINE Alu 3 290 -20 472 173 113 125 chr13 49002488 49002512 -70742386 + MIR SINE MIR 239 262 0 2235 97 0 3 chr13 49002616 49002924 -70741974 + AluY SINE Alu 1 307 -4 2268 101 16 3 chr13 49004299 49004607 -70740291 + AluSx SINE Alu 1 312 0 1417 159 0 0 chr13 49005329 49005549 -70739349 + AluJb SINE Alu 84 303 -9 589 265 110 15 chr13 49005585 49005785 -70739113 + MIR SINE MIR 3 221 -41 934 162 0 7 chr13 49006070 49006218 -70738680 - AluJo SINE Alu -161 151 5 988 191 0 12 chr13 49006250 49006418 -70738480 + FRAM SINE Alu 1 166 0 2254 100 7 3 chr13 49006570 49006879 -70738019 - AluSg SINE Alu 0 310 1 2186 120 0 0 chr13 49006881 49007173 -70737725 - AluSx SINE Alu -17 295 4 2244 106 0 3 chr13 49007398 49007691 -70737207 + AluSg SINE Alu 13 304 -6 318 244 8 84 chr13 49007868 49007987 -70736911 - MIR SINE MIR -92 170 61 2213 92 0 7 chr13 49008258 49008566 -70736332 - AluSg SINE Alu 0 306 1 21 0 0 0 chr13 49008665 49008686 -70736212 + AT_rich Low_complexity Low_complexity 1 21 0 1664 170 4 0 chr13 49008754 49009019 -70735879 + AluJb SINE Alu 2 267 -45 332 336 49 28 chr13 49010236 49010379 -70734519 + MLT1K LTR MaLR 121 266 -322 2356 100 0 3 chr13 49010405 49010716 -70734182 + AluSx SINE Alu 1 310 -2 306 172 156 0 chr13 49010887 49010951 -70733947 - MARNA DNA Mariner -40 546 473 320 266 79 22 chr13 49010956 49011095 -70733803 + MARNA DNA Mariner 320 466 -120 255 286 60 0 chr13 49011036 49011120 -70733778 - MARNA DNA Mariner -408 178 90 * 2382 81 16 7 chr13 49011362 49011672 -70733226 + AluSq SINE Alu 1 313 0 322 324 9 9 chr13 49011906 49012014 -70732884 + L2 LINE L2 3206 3313 0 2393 80 13 0 chr13 49014350 49014652 -70730246 + AluSx SINE Alu 1 306 -6 207 0 0 0 chr13 49015124 49015147 -70729751 + (T)n Simple_repeat Simple_repeat 1 23 0 237 327 82 18 chr13 49015272 49015382 -70729516 - MIR SINE MIR -111 151 35 3305 87 24 0 chr13 49015382 49015806 -70729092 - MER57B LTR ERV1 0 434 1 879 271 61 4 chr13 49016851 49017098 -70727800 - MIR SINE MIR 0 262 2 2196 113 3 13 chr13 49017133 49017443 -70727455 + AluSx SINE Alu 1 307 -5 480 92 0 0 chr13 49017733 49017798 -70727100 - AluJb SINE Alu -6 306 242 1090 123 0 7 chr13 49017798 49017952 -70726946 - AluJb SINE Alu -159 153 1 1390 122 0 0 chr13 49017962 49018150 -70726748 - AluSq SINE Alu -15 298 111 557 101 0 0 chr13 49018150 49018219 -70726679 + AluSq/x SINE Alu 35 103 -210 22 56 0 0 chr13 49018335 49018371 -70726527 + AT_rich Low_complexity Low_complexity 1 36 0 1034 218 0 0 chr13 49019611 49019785 -70725113 + FAM SINE Alu 1 174 -1 2301 58 3 17 chr13 49019947 49020241 -70724657 - AluY SINE Alu -21 290 1 2348 102 0 0 chr13 49020552 49020855 -70724043 - AluSc SINE Alu -6 303 1 1980 128 3 20 chr13 49020988 49021285 -70723613 - AluJo SINE Alu -20 292 1 4331 189 46 15 chr13 49021292 49022335 -70722563 - L1MB7 LINE L1 0 6184 5103 795 127 16 0 chr13 49022338 49022464 -70722434 + MLT2B3 LTR ERVL 1 128 -387 1007 120 0 0 chr13 49022464 49022597 -70722301 + AluSq/x SINE Alu 1 133 -180 2063 128 7 7 chr13 49022608 49022904 -70721994 + AluSx SINE Alu 1 296 -16 1767 237 36 48 chr13 49022904 49023343 -70721555 + MLT2B3 LTR ERVL 118 551 -3 1302 200 12 4 chr13 49023345 49023595 -70721303 - L1MB7 LINE L1 -1042 5104 4853 2416 87 0 0 chr13 49023805 49024105 -70720793 + AluY SINE Alu 1 300 -11 3952 90 15 43 chr13 49024259 49024828 -70720070 + MER4B LTR ERV1 1 554 -56 2205 115 0 0 chr13 49024828 49025114 -70719784 - AluSx SINE Alu -26 286 1 3952 90 15 43 chr13 49025114 49025147 -70719751 + MER4B LTR ERV1 554 586 -24 4361 155 27 10 chr13 49025147 49025778 -70719120 + L1PB1 LINE L1 4134 4753 -1398 2179 112 3 3 chr13 49025778 49026073 -70718825 + AluSx SINE Alu 1 295 -17 4361 155 27 10 chr13 49026073 49027180 -70717718 + L1PB1 LINE L1 4753 6083 -68 2031 115 14 3 chr13 49027541 49027827 -70717071 + AluSc SINE Alu 1 289 -20 1284 125 103 22 chr13 49027856 49028080 -70716818 + MLT1D LTR MaLR 3 244 -261 720 102 0 74 chr13 49028113 49028221 -70716677 - MER30 DNA MER1_type 0 230 131 1811 115 4 4 chr13 49028221 49028473 -70716425 - AluSq SINE Alu -12 301 50 2110 143 0 0 chr13 49028474 49028781 -70716117 + AluSx SINE Alu 1 307 -5 3195 75 19 0 chr13 49028781 49029197 -70715701 - MER41A LTR ERV1 -130 424 1 297 224 0 0 chr13 49029206 49029264 -70715634 + MLT1D LTR MaLR 396 453 -52 1042 178 163 15 chr13 49029275 49029607 -70715291 - MER21B LTR ERV1 -369 494 93 249 196 0 0 chr13 49029623 49029679 -70715219 + (TA)n Simple_repeat Simple_repeat 1 56 0 2140 116 3 0 chr13 49029679 49029964 -70714934 - AluSx SINE Alu -26 286 1 551 122 41 0 chr13 49029964 49030062 -70714836 - MER21A LTR ERV1 -829 102 1 7436 140 34 51 chr13 49030136 49030383 -70714515 - MER21A-int LTR ERV1 -51 4140 3890 1589 188 0 33 chr13 49030383 49030686 -70714212 - AluJb SINE Alu -19 293 1 7436 140 34 51 chr13 49030686 49031120 -70713778 - MER21A-int LTR ERV1 -301 3890 3450 2309 84 3 0 chr13 49031120 49031417 -70713481 - AluY SINE Alu -13 298 1 7436 140 34 51 chr13 49031417 49032057 -70712841 - MER21A-int LTR ERV1 -741 3450 2841 5971 166 77 28 chr13 49032037 49033083 -70711815 - MER21A-int LTR ERV1 -1776 2415 1309 * 861 165 0 8 chr13 49033083 49033216 -70711682 - FLAM_C SINE Alu -1 132 1 5971 166 77 28 chr13 49033216 49033299 -70711599 - MER21A-int LTR ERV1 -2882 1309 1231 360 133 0 0 chr13 49033312 49033372 -70711526 + (TCC)n Simple_repeat Simple_repeat 3 62 0 389 137 0 11 chr13 49033376 49033471 -70711427 + (CTG)n Simple_repeat Simple_repeat 2 95 0 * 520 173 6 40 chr13 49033463 49033636 -70711262 + CT-rich Low_complexity Low_complexity 3 169 0 498 161 23 11 chr13 49033643 49033730 -70711168 + polypyrimidine Low_complexity Low_complexity 1 88 0 994 151 7 0 chr13 49033730 49033882 -70711016 - FRAM SINE Alu -3 173 21 449 267 50 40 chr13 49035226 49035451 -70709447 + L1MC5 LINE L1 7236 7493 -534 1786 216 45 31 chr13 49035468 49035916 -70708982 - LTR40c LTR ERVL -4 461 8 2510 206 37 19 chr13 49036044 49036635 -70708263 - L1M4 LINE L1 -1099 5047 4446 * 8435 200 40 68 chr13 49036621 49037050 -70707848 + L1MCa LINE L1 2080 2519 -3907 2298 120 0 0 chr13 49037050 49037358 -70707540 + AluSg SINE Alu 3 310 0 8435 200 40 68 chr13 49037358 49037574 -70707324 + L1MCa LINE L1 2519 2739 -3687 2033 122 10 32 chr13 49037574 49037885 -70707013 - AluSx SINE Alu -8 304 1 8435 200 40 68 chr13 49037885 49038330 -70706568 + L1MCa LINE L1 2739 3195 -3231 2124 65 0 8 chr13 49038330 49038591 -70706307 - AluY SINE Alu -13 298 40 8435 200 40 68 chr13 49038591 49039501 -70705397 + L1MCa LINE L1 3195 3966 -2460 1879 164 6 13 chr13 49039501 49039813 -70705085 + AluJo SINE Alu 1 310 -2 8435 200 40 68 chr13 49039813 49040845 -70704053 + L1MCa LINE L1 3966 5025 -1401 472 206 0 0 chr13 49040853 49040926 -70703972 + FLAM_A SINE Alu 6 78 -64 6322 163 24 25 chr13 49040930 49041049 -70703849 + L1MC1 LINE L1 4628 4746 -1587 797 194 0 43 chr13 49041049 49041188 -70703710 + FLAM_A SINE Alu 1 133 0 6322 163 24 25 chr13 49041188 49041521 -70703377 + L1MC1 LINE L1 4746 5078 -1255 2710 166 26 5 chr13 49041521 49041938 -70702960 + MSTB LTR MaLR 1 426 0 6322 163 24 25 chr13 49041938 49041955 -70702943 + L1MC1 LINE L1 5078 5094 -1239 2511 54 0 10 chr13 49041955 49042253 -70702645 - AluY SINE Alu -16 295 1 6322 163 24 25 chr13 49042253 49043487 -70701411 + L1MC1 LINE L1 5094 6327 -6 3570 206 113 75 chr13 49043494 49043505 -70701393 + L1ME2 LINE L1 3793 3802 -2344 2448 94 3 0 chr13 49043505 49043813 -70701085 + AluSg SINE Alu 1 309 -1 3570 206 113 75 chr13 49043813 49044562 -70700336 + L1ME2 LINE L1 3802 4521 -1625 827 142 0 25 chr13 49044562 49044682 -70700216 + FLAM_C SINE Alu 2 118 -15 495 0 0 0 chr13 49044688 49044743 -70700155 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3570 206 113 75 chr13 49044743 49044801 -70700097 + L1ME2 LINE L1 4525 4579 -1567 2063 135 6 6 chr13 49044801 49045113 -70699785 - AluSx SINE Alu 0 312 1 3570 206 113 75 chr13 49045113 49045521 -70699377 + L1ME2 LINE L1 4579 5084 -1062 2236 98 3 3 chr13 49045521 49045818 -70699080 - AluSx SINE Alu -15 297 1 3570 206 113 75 chr13 49045818 49045899 -70698999 + L1ME2 LINE L1 5084 5160 -986 1606 200 31 14 chr13 49046118 49046473 -70698425 - L1M4 LINE L1 -1089 5057 4697 21 0 0 0 chr13 49046480 49046501 -70698397 + AT_rich Low_complexity Low_complexity 1 21 0 2094 137 0 0 chr13 49046502 49046801 -70698097 + AluSx SINE Alu 1 299 -13 2591 184 91 13 chr13 49046802 49047465 -70697433 + L1ME2 LINE L1 5162 5873 -293 2504 69 0 0 chr13 49047682 49047987 -70696911 + AluY SINE Alu 1 305 -6 1080 125 0 7 chr13 49047988 49048140 -70696758 + AluSg/x SINE Alu 134 284 -28 180 0 0 0 chr13 49048145 49048165 -70696733 + (CAA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr13 49048194 49048225 -70696673 + AT_rich Low_complexity Low_complexity 1 31 0 1753 172 31 0 chr13 49048578 49048869 -70696029 - AluJb SINE Alu -12 300 1 2346 82 7 0 chr13 49049065 49049356 -70695542 + AluSp SINE Alu 1 293 -20 1481 122 176 16 chr13 49049362 49049617 -70695281 + AluSg SINE Alu 1 296 -4 351 238 14 95 chr13 49049617 49049764 -70695134 + L1ME2 LINE L1 6020 6154 -10 254 260 13 13 chr13 49049799 49049876 -70695022 + L1MC4 LINE L1 7826 7902 -140 1880 111 41 4 chr13 49050140 49050410 -70694488 - AluSg SINE Alu -30 280 1 309 186 43 0 chr13 49050531 49050601 -70694297 - L2 LINE L2 -1 3271 3199 2132 110 14 3 chr13 49051244 49051536 -70693362 + AluSx SINE Alu 3 297 -15 1996 112 53 0 chr13 49051818 49052103 -70692795 - AluSp SINE Alu -13 300 1 1271 137 0 2 chr13 49053133 49053381 -70691517 - AluJb SINE Alu -9 303 2 210 222 0 0 chr13 49053573 49053627 -70691271 + (TATG)n Simple_repeat Simple_repeat 2 55 0 342 309 113 24 chr13 49054612 49054780 -70690118 + L2 LINE L2 3090 3272 0 291 218 0 0 chr13 49055200 49055255 -70689643 - MIR3 SINE MIR -43 165 111 1980 146 10 0 chr13 49055417 49055712 -70689186 + AluJo SINE Alu 1 298 -14 364 293 193 0 chr13 49056692 49056842 -70688056 - MER5A DNA MER1_type -7 182 4 2039 104 0 75 chr13 49057539 49057857 -70687041 + AluSp SINE Alu 1 294 -19 2312 91 0 7 chr13 49057867 49058165 -70686733 + AluSc SINE Alu 1 296 -13 291 299 79 30 chr13 49058516 49058680 -70686218 - MIR SINE MIR -1 261 90 * 976 280 95 40 chr13 49058660 49058912 -70685986 + L2 LINE L2 2429 2666 -648 1533 195 3 52 chr13 49058912 49059143 -70685755 - AluJo SINE Alu 0 312 71 216 0 0 0 chr13 49059143 49059167 -70685731 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2163 102 3 0 chr13 49059168 49059451 -70685447 - AluSq SINE Alu -29 284 1 1533 195 3 52 chr13 49059451 49059545 -70685353 - AluJo SINE Alu -240 72 1 976 280 95 40 chr13 49059545 49059671 -70685227 + L2 LINE L2 2666 2828 -486 1458 261 127 18 chr13 49059687 49060372 -70684526 - L2 LINE L2 0 3313 2540 27 0 0 0 chr13 49060796 49060823 -70684075 + AT_rich Low_complexity Low_complexity 1 27 0 2077 101 54 10 chr13 49060966 49061262 -70683636 + AluSc SINE Alu 1 309 0 2523 58 0 0 chr13 49061269 49061563 -70683335 + AluY SINE Alu 1 294 -17 311 254 108 27 chr13 49061986 49062156 -70682742 + MIR SINE MIR 23 203 -59 274 204 83 91 chr13 49062265 49062397 -70682501 + MER94 DNA DNA 3 133 -1 1937 126 0 52 chr13 49062569 49062878 -70682020 + AluJo SINE Alu 2 294 -18 2209 114 19 3 chr13 49062911 49063218 -70681680 + AluSq SINE Alu 1 312 -1 267 213 13 80 chr13 49064091 49064166 -70680732 + MIR SINE MIR 81 150 -112 2341 96 0 3 chr13 49064212 49064515 -70680383 - AluSg SINE Alu -8 302 1 1442 128 14 9 chr13 49064611 49064830 -70680068 - AluSg/x SINE Alu -9 303 84 2322 101 0 3 chr13 49065325 49065623 -70679275 + AluSg SINE Alu 1 297 -13 2214 132 0 0 chr13 49065632 49065943 -70678955 + AluSx SINE Alu 1 311 -1 1127 126 0 0 chr13 49066212 49066387 -70678511 + AluSc SINE Alu 131 305 0 215 278 153 53 chr13 49066708 49066744 -70678154 - L2 LINE L2 -47 3266 3235 228 35 0 0 chr13 49066744 49066773 -70678125 + (CA)n Simple_repeat Simple_repeat 2 30 0 215 278 153 53 chr13 49066773 49067114 -70677784 - L2 LINE L2 -78 3235 2851 515 283 89 31 chr13 49067241 49067499 -70677399 - L2 LINE L2 -1159 2155 1883 2428 83 3 6 chr13 49068149 49068461 -70676437 - AluSp SINE Alu -2 311 1 2004 129 24 3 chr13 49068709 49069004 -70675894 + AluSx SINE Alu 1 301 -11 25 31 0 0 chr13 49069092 49069124 -70675774 + AT_rich Low_complexity Low_complexity 1 32 0 1202 195 112 4 chr13 49069264 49069547 -70675351 + AluJb SINE Alu 6 315 0 184 307 144 40 chr13 49069704 49069906 -70674992 + L2 LINE L2 2895 3117 -155 2335 95 0 0 chr13 49069950 49070245 -70674653 - AluSq SINE Alu -18 295 1 628 274 160 19 chr13 49070949 49071161 -70673737 - MIR SINE MIR -1 261 20 45 87 0 0 chr13 49071520 49071635 -70673263 + AT_rich Low_complexity Low_complexity 1 115 0 28 0 0 0 chr13 49072172 49072200 -70672698 + AT_rich Low_complexity Low_complexity 1 28 0 1484 149 193 80 chr13 49072221 49072584 -70672314 - MER4A LTR ERV1 0 664 261 603 92 41 41 chr13 49072584 49072682 -70672216 - MER4A LTR ERV1 -566 98 1 1813 136 11 0 chr13 49072750 49073014 -70671884 + AluJo SINE Alu 1 267 -45 676 228 35 108 chr13 49073734 49073829 -70671069 + LTR9 LTR ERV1 3 103 -509 1921 96 11 8 chr13 49073829 49074090 -70670808 + AluSx SINE Alu 36 297 -15 676 228 35 108 chr13 49074090 49074253 -70670645 + LTR9 LTR ERV1 103 242 -370 845 226 99 53 chr13 49074270 49074665 -70670233 + LTR9 LTR ERV1 213 612 0 693 174 23 38 chr13 49074691 49074823 -70670075 - FLAM_A SINE Alu -2 131 2 273 304 0 0 chr13 49074949 49075018 -70669880 - MIR3 SINE MIR -28 180 112 195 291 127 76 chr13 49075039 49075197 -70669701 + MIR3 SINE MIR 30 195 -13 604 264 36 27 chr13 49075385 49075605 -70669293 + L1ME LINE L1 5508 5729 -392 1527 108 0 5 chr13 49075790 49075994 -70668904 + AluSq SINE Alu 99 301 -12 2015 139 10 0 chr13 49076792 49077094 -70667804 + AluSx SINE Alu 1 305 -7 2203 124 0 0 chr13 49077347 49077645 -70667253 - AluSg SINE Alu -12 298 1 416 125 0 0 chr13 49077673 49077729 -70667169 + FLAM_A SINE Alu 5 60 -72 1491 177 23 30 chr13 49078863 49079163 -70665735 + AluJb SINE Alu 1 298 -14 1889 141 0 55 chr13 49079165 49079477 -70665421 + AluSx SINE Alu 1 295 -17 2457 74 0 0 chr13 49079478 49079775 -70665123 + AluSq SINE Alu 1 297 -16 1850 80 106 14 chr13 49080050 49080325 -70664573 - AluSp SINE Alu -13 300 1 2191 101 0 16 chr13 49081208 49081515 -70663383 + AluSx SINE Alu 1 302 -10 2238 95 7 7 chr13 49081518 49081814 -70663084 + AluSg SINE Alu 1 296 -14 2183 91 21 3 chr13 49081815 49082100 -70662798 + AluSq SINE Alu 2 291 -22 2329 78 0 7 chr13 49082373 49082668 -70662230 - AluY SINE Alu -18 293 1 1509 171 100 7 chr13 49082846 49083126 -70661772 + AluJo SINE Alu 1 306 -6 5704 159 109 40 chr13 49083158 49083216 -70661682 - Charlie1a DNA MER1_type -1310 1451 1398 1596 163 27 44 chr13 49083216 49083511 -70661387 + AluJb SINE Alu 21 310 -2 5704 159 109 40 chr13 49083511 49083788 -70661110 - Charlie1a DNA MER1_type -1363 1398 1141 1424 155 33 100 chr13 49083788 49083917 -70660981 + AluJo SINE Alu 1 137 -175 2449 89 0 0 chr13 49083917 49084221 -70660677 + AluSx SINE Alu 1 304 -8 1424 155 33 100 chr13 49084221 49084420 -70660478 + AluJo SINE Alu 137 307 -5 5704 159 109 40 chr13 49084420 49084503 -70660395 - Charlie1a DNA MER1_type -1620 1141 1065 1836 160 0 16 chr13 49084503 49084816 -70660082 - AluJb SINE Alu -4 308 1 5704 159 109 40 chr13 49084816 49085753 -70659145 - Charlie1a DNA MER1_type -1696 1065 1 2239 94 0 50 chr13 49087981 49088300 -70656598 - AluY SINE Alu -8 303 1 693 199 0 57 chr13 49088650 49088791 -70656107 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr13 49088791 49088815 -70656083 + AT_rich Low_complexity Low_complexity 1 24 0 225 234 0 0 chr13 49088815 49088879 -70656019 - L1MC4 LINE L1 -1339 6703 6640 23 0 0 0 chr13 49089534 49089557 -70655341 + AT_rich Low_complexity Low_complexity 1 23 0 513 0 0 0 chr13 49089557 49089614 -70655284 + (TA)n Simple_repeat Simple_repeat 1 57 0 478 189 90 8 chr13 49090672 49090794 -70654104 + MER94 DNA DNA 1 132 -2 22 35 0 0 chr13 49091313 49091342 -70653556 + AT_rich Low_complexity Low_complexity 1 29 0 2250 102 0 0 chr13 49093255 49093540 -70651358 - AluSp SINE Alu -28 285 1 806 67 0 0 chr13 49093595 49093699 -70651199 - AluY SINE Alu 0 311 208 2165 133 0 0 chr13 49094218 49094519 -70650379 + AluSx SINE Alu 1 301 -11 345 130 37 0 chr13 49095173 49095227 -70649671 + AluS SINE Alu 226 281 -21 586 209 0 0 chr13 49095227 49095356 -70649542 + L1MA4 LINE L1 6164 6292 -8 192 40 0 0 chr13 49095398 49095423 -70649475 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2125 93 0 7 chr13 49095423 49095702 -70649196 - AluSc SINE Alu -32 277 1 25 0 0 0 chr13 49095747 49095772 -70649126 + AT_rich Low_complexity Low_complexity 1 25 0 1613 131 10 86 chr13 49095786 49096076 -70648822 - AluJo SINE Alu -44 268 1 2151 128 0 3 chr13 49096265 49096562 -70648336 - AluSx SINE Alu -16 296 1 629 147 73 59 chr13 49097115 49097251 -70647647 + FLAM_C SINE Alu 6 143 0 2035 123 20 13 chr13 49097316 49097618 -70647280 + AluSx SINE Alu 1 304 -8 1758 180 7 3 chr13 49098121 49098415 -70646483 - AluJo SINE Alu -17 295 1 2104 125 10 0 chr13 49098735 49099030 -70645868 + AluSq SINE Alu 1 298 -15 419 321 109 40 chr13 49100581 49100735 -70644163 + L2 LINE L2 2228 2370 -944 2171 117 13 0 chr13 49100735 49101033 -70643865 - AluSx SINE Alu -10 302 1 419 321 109 40 chr13 49101033 49101273 -70643625 + L2 LINE L2 2370 2649 -665 198 374 0 24 chr13 49102895 49102978 -70641920 - L2 LINE L2 -7 3265 3185 2434 179 50 44 chr13 49104589 49105109 -70639789 - MER44D DNA MER2_type -1 604 27 22 0 0 0 chr13 49105294 49105316 -70639582 + AT_rich Low_complexity Low_complexity 1 22 0 2089 104 6 22 chr13 49105319 49105455 -70639443 + AluSx SINE Alu 1 138 -174 2324 78 0 53 chr13 49105455 49105775 -70639123 + AluY SINE Alu 1 303 -8 2089 104 6 22 chr13 49105775 49105955 -70638943 + AluSx SINE Alu 138 312 0 2188 107 10 0 chr13 49107442 49107742 -70637156 + AluSg SINE Alu 1 303 -7 2178 107 3 0 chr13 49108917 49109215 -70635683 - AluSq SINE Alu -14 299 1 298 278 0 0 chr13 49109560 49109650 -70635248 + L1MC4 LINE L1 6614 6703 -1339 201 182 0 0 chr13 49109650 49109683 -70635215 + (TA)n Simple_repeat Simple_repeat 2 34 0 2063 137 0 0 chr13 49109683 49109975 -70634923 - AluSx SINE Alu -20 292 1 580 301 118 18 chr13 49110616 49110845 -70634053 + MIR SINE MIR 11 262 0 180 0 0 0 chr13 49111369 49111389 -70633509 + (CA)n Simple_repeat Simple_repeat 2 21 0 2018 85 14 11 chr13 49111793 49112075 -70632823 - AluSg SINE Alu -27 283 1 270 302 274 16 chr13 49112198 49112453 -70632445 - L3 LINE CR1 -155 1422 1102 1485 173 40 10 chr13 49112811 49113111 -70631787 + AluJo SINE Alu 1 309 -3 1904 87 112 0 chr13 49113450 49113726 -70631172 - AluSx SINE Alu -5 307 1 2028 129 0 10 chr13 49114089 49114392 -70630506 - AluSx SINE Alu -10 302 3 23 33 0 0 chr13 49114853 49114883 -70630015 + AT_rich Low_complexity Low_complexity 1 30 0 2001 121 17 0 chr13 49116416 49116706 -70628192 + AluSg SINE Alu 3 297 -13 1936 110 7 17 chr13 49117123 49117414 -70627484 + AluSg SINE Alu 1 288 -22 1196 263 33 82 chr13 49117461 49117947 -70626951 + L2 LINE L2 2804 3265 -48 24 0 0 0 chr13 49119276 49119300 -70625598 + AT_rich Low_complexity Low_complexity 1 24 0 2007 120 7 0 chr13 49120627 49120926 -70623972 - AluSx SINE Alu -11 301 1 237 267 0 0 chr13 49120936 49120981 -70623917 + C-rich Low_complexity Low_complexity 5 49 0 1985 101 0 0 chr13 49120984 49121241 -70623657 - AluSg SINE Alu -53 257 1 1491 116 148 12 chr13 49121535 49121785 -70623113 - AluSx SINE Alu -28 284 1 688 157 26 0 chr13 49121810 49121925 -70622973 + FLAM_C SINE Alu 1 118 -25 25 51 0 0 chr13 49121925 49121964 -70622934 + AT_rich Low_complexity Low_complexity 1 39 0 2143 108 0 3 chr13 49121964 49122259 -70622639 - AluSq SINE Alu -19 294 1 2211 71 44 3 chr13 49122263 49122558 -70622340 - AluY SINE Alu -4 307 1 45 34 0 0 chr13 49122564 49122623 -70622275 + AT_rich Low_complexity Low_complexity 1 59 0 21 95 0 0 chr13 49124198 49124261 -70620637 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chr13 49124318 49124353 -70620545 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 49124944 49124975 -70619923 + AT_rich Low_complexity Low_complexity 1 31 0 1475 179 14 21 chr13 49125132 49125412 -70619486 - AluJo SINE Alu -34 278 1 925 92 8 15 chr13 49125419 49125549 -70619349 - AluSq/x SINE Alu -180 133 5 333 226 65 65 chr13 49125739 49125832 -70619066 - L2 LINE L2 -6 3307 3215 9845 126 81 13 chr13 49125836 49126031 -70618867 + Tigger2 DNA MER2_type 944 1124 -1594 2457 70 0 0 chr13 49126031 49126332 -70618566 - AluY SINE Alu -10 301 1 9845 126 81 13 chr13 49126332 49127797 -70617101 + Tigger2 DNA MER2_type 1124 2718 0 4507 183 75 20 chr13 49127799 49128761 -70616137 - L1MB3 LINE L1 0 6183 5275 1908 115 54 0 chr13 49128761 49129039 -70615859 - AluSg SINE Alu -17 293 1 4507 183 75 20 chr13 49129039 49129981 -70614917 - L1MB3 LINE L1 -908 5275 4190 647 257 231 21 chr13 49130033 49130371 -70614527 + L2 LINE L2 1284 1692 -1622 22 0 0 0 chr13 49130531 49130553 -70614345 + AT_rich Low_complexity Low_complexity 1 22 0 1850 155 0 20 chr13 49131220 49131523 -70613375 - AluJb SINE Alu -14 298 2 1473 129 40 114 chr13 49132417 49132559 -70612339 + AluJo SINE Alu 1 107 -205 1546 77 0 61 chr13 49132559 49132632 -70612266 - L1PA13 LINE L1 -5 6158 6082 2153 118 0 6 chr13 49132632 49132945 -70611953 - AluSx SINE Alu -1 311 1 1546 77 0 61 chr13 49132945 49133118 -70611780 - L1PA13 LINE L1 -81 6082 5927 1473 129 40 114 chr13 49133118 49133300 -70611598 + AluJo SINE Alu 107 301 -11 545 272 97 106 chr13 49134455 49134775 -70610123 + L3 LINE CR1 907 1223 -354 4552 158 60 10 chr13 49134826 49135649 -70609249 + MER6 DNA MER2_type 2 865 0 23 54 0 0 chr13 49135770 49135807 -70609091 + AT_rich Low_complexity Low_complexity 1 37 0 2144 128 0 0 chr13 49136009 49136306 -70608592 - AluSx SINE Alu -15 297 1 1999 119 11 3 chr13 49136322 49136608 -70608290 - AluSq SINE Alu -25 288 1 1327 117 0 0 chr13 49136777 49136956 -70607942 - AluSg/x SINE Alu -6 304 126 450 0 0 0 chr13 49136956 49137006 -70607892 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2042 121 0 0 chr13 49137006 49137288 -70607610 - AluSg SINE Alu -28 282 1 2183 96 0 32 chr13 49139235 49139549 -70605349 + AluSp SINE Alu 1 304 -9 659 104 58 0 chr13 49139582 49139929 -70604969 + (TA)n Simple_repeat Simple_repeat 1 367 0 1394 83 0 0 chr13 49139944 49140125 -70604773 - AluY SINE Alu 0 311 131 187 286 18 0 chr13 49141555 49141611 -70603287 + MER5A DNA MER1_type 50 106 -83 504 228 0 0 chr13 49141648 49141740 -70603158 + L2 LINE L2 3221 3312 -1 2487 30 3 3 chr13 49141812 49142109 -70602789 - AluY SINE Alu -14 297 1 966 161 0 25 chr13 49142795 49142956 -70601942 - FRAM SINE Alu -20 156 1 257 281 76 41 chr13 49143883 49144123 -70600775 - L1ME LINE L1 -364 5798 5533 22 0 0 0 chr13 49144599 49144621 -70600277 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr13 49145107 49145134 -70599764 + (A)n Simple_repeat Simple_repeat 1 27 0 192 77 0 0 chr13 49146139 49146165 -70598733 + (CTG)n Simple_repeat Simple_repeat 2 27 0 28 29 0 0 chr13 49146266 49146301 -70598597 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 49147147 49147176 -70597722 + AT_rich Low_complexity Low_complexity 1 29 0 26 74 0 0 chr13 49147661 49147715 -70597183 + AT_rich Low_complexity Low_complexity 1 54 0 1281 109 0 0 chr13 49150590 49150764 -70594134 - AluSq SINE Alu -6 307 134 32 75 0 0 chr13 49151658 49151725 -70593173 + AT_rich Low_complexity Low_complexity 1 67 0 23 86 0 0 chr13 49152320 49152378 -70592520 + AT_rich Low_complexity Low_complexity 1 58 0 214 246 0 0 chr13 49152524 49152585 -70592313 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 626 254 57 24 chr13 49156963 49157172 -70587726 - MIR SINE MIR -43 219 4 657 234 86 54 chr13 49157480 49157702 -70587196 - MIR SINE MIR -2 260 32 2480 45 0 0 chr13 49157748 49158035 -70586863 - AluSc SINE Alu -15 294 8 682 230 177 10 chr13 49158268 49158477 -70586421 + MIR SINE MIR 18 261 -1 2093 85 60 0 chr13 49158560 49158842 -70586056 - AluSg SINE Alu -10 300 2 391 261 52 0 chr13 49159313 49159428 -70585470 - MIR SINE MIR -10 252 132 2544 52 0 3 chr13 49160184 49160490 -70584408 + AluY SINE Alu 1 305 -6 721 195 16 0 chr13 49160927 49161055 -70583843 - FLAM_A SINE Alu -3 130 1 1656 181 96 86 chr13 49161206 49161704 -70583194 + MLT1D LTR MaLR 1 503 -2 198 0 0 0 chr13 49161761 49161783 -70583115 + (TG)n Simple_repeat Simple_repeat 2 23 0 1244 162 18 9 chr13 49161810 49162039 -70582859 - AluJb SINE Alu 0 312 82 1828 128 64 0 chr13 49162832 49163113 -70581785 - AluSx SINE Alu -13 299 1 403 329 57 73 chr13 49163338 49163654 -70581244 - L3 LINE CR1 -213 1364 1054 1825 141 0 53 chr13 49164842 49165146 -70579752 - AluSx SINE Alu -24 288 1 675 308 113 68 chr13 49166110 49166235 -70578663 - L2 LINE L2 -809 2505 2387 225 0 0 0 chr13 49166235 49166260 -70578638 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 423 68 0 0 chr13 49166259 49166318 -70578580 + (TG)n Simple_repeat Simple_repeat 1 59 0 675 308 113 68 chr13 49166260 49166854 -70578044 - L2 LINE L2 -927 2387 1814 2145 137 3 0 chr13 49166854 49167160 -70577738 + AluSp SINE Alu 1 307 -6 30 0 0 0 chr13 49167200 49167230 -70577668 + AT_rich Low_complexity Low_complexity 1 30 0 1517 215 75 32 chr13 49167450 49167892 -70577006 + L1MA10 LINE L1 5871 6331 -3 540 272 110 0 chr13 49167950 49168178 -70576720 + L1MD3 LINE L1 7743 7995 0 476 158 11 0 chr13 49168179 49168274 -70576624 + L1MB4 LINE L1 6067 6162 -18 544 209 0 0 chr13 49168305 49168410 -70576488 + L1PA16 LINE L1 6053 6157 -9 26 0 0 0 chr13 49168410 49168436 -70576462 + AT_rich Low_complexity Low_complexity 1 26 0 1454 211 65 8 chr13 49168440 49168796 -70576102 + MER101 LTR ERV1 72 447 -27 257 308 33 42 chr13 49168983 49169103 -70575795 - MER5B DNA MER1_type -59 119 1 433 302 21 30 chr13 49170073 49170314 -70574584 + L2 LINE L2 2756 2992 -321 572 290 159 12 chr13 49170629 49170881 -70574017 + L2 LINE L2 3024 3312 -1 34 24 0 0 chr13 49170919 49170960 -70573938 + AT_rich Low_complexity Low_complexity 1 41 0 234 0 0 0 chr13 49171079 49171105 -70573793 + (TA)n Simple_repeat Simple_repeat 2 27 0 1542 121 12 0 chr13 49171517 49171766 -70573132 - L1MA5A LINE L1 -6 6291 6040 198 343 48 19 chr13 49171875 49171980 -70572918 + MIR SINE MIR 30 137 -71 22 0 0 0 chr13 49172490 49172512 -70572386 + AT_rich Low_complexity Low_complexity 1 22 0 457 195 47 8 chr13 49172673 49172801 -70572097 + L1MB7 LINE L1 6052 6184 0 1308 201 42 50 chr13 49173549 49173832 -70571066 + AluJo SINE Alu 4 284 -18 327 49 0 0 chr13 49173832 49173873 -70571025 + (CA)n Simple_repeat Simple_repeat 2 42 0 1860 168 3 0 chr13 49175009 49175301 -70569597 - AluJb SINE Alu -19 293 1 562 284 119 49 chr13 49175852 49176324 -70568574 + MLT1K LTR MaLR 77 581 -7 2077 152 3 3 chr13 49176340 49176643 -70568255 - AluSx SINE Alu -9 303 1 381 287 0 19 chr13 49176975 49177083 -70567815 + MLT2E LTR ERVL 30 135 -493 297 0 0 0 chr13 49177323 49177356 -70567542 + (CAGC)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr13 49177687 49177716 -70567182 + AT_rich Low_complexity Low_complexity 1 29 0 730 142 0 0 chr13 49182949 49183055 -70561843 + FRAM SINE Alu 41 146 -30 207 0 0 0 chr13 49183059 49183082 -70561816 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 310 256 70 35 chr13 49183330 49183416 -70561482 + MIR SINE MIR 40 128 -134 428 334 13 5 chr13 49184066 49184251 -70560647 + MIR3 SINE MIR 15 200 -8 368 278 35 77 chr13 49184451 49184620 -70560278 + MLT1J LTR MaLR 258 419 -92 581 293 47 16 chr13 49186270 49186461 -70558437 - MIR SINE MIR -38 224 28 2986 167 14 61 chr13 49186479 49187121 -70557777 + LTR9 LTR ERV1 1 612 0 298 273 203 16 chr13 49188315 49188443 -70556455 + MIR SINE MIR 110 261 -1 1742 173 9 35 chr13 49188750 49189096 -70555802 - MER1B DNA MER1_type 0 337 1 211 237 105 26 chr13 49189234 49189310 -70555588 + MIR SINE MIR 181 262 0 231 339 150 0 chr13 49189311 49189438 -70555460 + L3b LINE CR1 1168 1313 -270 502 152 50 0 chr13 49190146 49190245 -70554653 - MER5A DNA MER1_type -77 112 9 192 163 116 0 chr13 49192188 49192231 -70552667 + MIR3 SINE MIR 119 166 -42 * 692 211 60 18 chr13 49192225 49192391 -70552507 - MER5B DNA MER1_type -5 173 1 214 271 17 0 chr13 49192391 49192446 -70552452 + MIR3 SINE MIR 153 208 0 262 229 0 0 chr13 49192967 49193028 -70551870 + T-rich Low_complexity Low_complexity 1 61 0 7295 30 1 1 chr13 49193029 49193931 -70550967 - L1PA3 LINE L1 0 6155 5254 475 29 43 0 chr13 49193942 49194012 -70550886 + L1P LINE L1 3745 3817 -2329 312 206 137 0 chr13 49194494 49194567 -70550331 + MIR SINE MIR 71 153 -109 6204 124 40 22 chr13 49194568 49194761 -70550137 + Tigger1 DNA MER2_type 1 189 -2229 2199 103 7 0 chr13 49194761 49195053 -70549845 - AluSx SINE Alu -18 294 1 6204 124 40 22 chr13 49195053 49195078 -70549820 + Tigger1 DNA MER2_type 189 212 -2206 2232 143 6 3 chr13 49195078 49195420 -70549478 + MER61A LTR ERV1 1 343 0 6204 124 40 22 chr13 49195420 49196280 -70548618 + Tigger1 DNA MER2_type 212 1099 -1319 2046 144 6 54 chr13 49196496 49196850 -70548048 + MER1B DNA MER1_type 1 337 0 1686 187 25 30 chr13 49197416 49197812 -70547086 + MSTD LTR MaLR 3 396 0 353 330 0 0 chr13 49197934 49198034 -70546864 + MIR SINE MIR 157 256 -6 396 289 56 41 chr13 49198167 49198364 -70546534 - MIR3 SINE MIR -1 207 8 309 283 71 0 chr13 49198785 49198884 -70546014 + MIR SINE MIR 65 170 -92 180 111 0 0 chr13 49198934 49198961 -70545937 + (TTG)n Simple_repeat Simple_repeat 3 29 0 372 261 292 5 chr13 49199198 49199393 -70545505 - MIR SINE MIR 0 262 12 327 49 0 0 chr13 49199837 49199878 -70545020 + (TA)n Simple_repeat Simple_repeat 2 42 0 326 298 101 38 chr13 49200103 49200261 -70544637 + MIR3 SINE MIR 30 197 -11 216 255 0 0 chr13 49200489 49200540 -70544358 + CT-rich Low_complexity Low_complexity 3 53 0 28 0 0 0 chr13 49200574 49200602 -70544296 + AT_rich Low_complexity Low_complexity 1 28 0 1597 199 34 0 chr13 49202044 49202340 -70542558 - AluJo SINE Alu -1 311 6 223 294 98 29 chr13 49202536 49202638 -70542260 - MIR SINE MIR -44 218 110 273 119 0 0 chr13 49202775 49202817 -70542081 + (A)n Simple_repeat Simple_repeat 1 42 0 2163 119 7 10 chr13 49203171 49203474 -70541424 + AluSq SINE Alu 1 302 -11 2188 128 0 0 chr13 49204237 49204533 -70540365 + AluSx SINE Alu 1 296 -16 438 294 25 103 chr13 49205088 49205448 -70539450 + L2 LINE L2 2941 3272 0 1539 164 4 4 chr13 49205710 49205960 -70538938 + AluSx SINE Alu 1 250 -62 25 0 0 0 chr13 49206081 49206106 -70538792 + AT_rich Low_complexity Low_complexity 1 25 0 326 279 125 0 chr13 49206124 49206228 -70538670 + L2 LINE L2 3156 3272 0 282 327 215 22 chr13 49206439 49207039 -70537859 - L3 LINE CR1 -102 1475 760 820 176 0 0 chr13 49207894 49208019 -70536879 - FLAM_C SINE Alu -8 125 1 298 278 104 26 chr13 49208408 49208523 -70536375 - L3 LINE CR1 -68 1509 1386 297 0 0 0 chr13 49209691 49209723 -70535175 + L1PA10 LINE L1 6025 6056 -112 2388 104 3 0 chr13 49209924 49210233 -70534665 + AluSp SINE Alu 1 310 -3 234 220 68 0 chr13 49211532 49211591 -70533307 - L1ME LINE L1 -328 5793 5731 2209 103 7 0 chr13 49211633 49211923 -70532975 - AluSq SINE Alu -19 294 3 1141 74 0 0 chr13 49211924 49212059 -70532839 - AluSq/x SINE Alu -176 136 2 619 164 60 0 chr13 49212498 49212614 -70532284 - L1MB3 LINE L1 -7 6176 6054 2260 95 3 0 chr13 49212884 49213169 -70531729 - AluSx SINE Alu -26 286 1 2297 75 7 3 chr13 49213503 49213797 -70531101 - AluSc SINE Alu -14 295 1 255 281 16 0 chr13 49214016 49214080 -70530818 + CT-rich Low_complexity Low_complexity 3 67 0 231 304 183 9 chr13 49215203 49215318 -70529580 - MIR SINE MIR -120 142 8 1094 241 181 20 chr13 49215636 49216542 -70528356 + L1MEc LINE L1 626 1691 -4705 1052 200 120 4 chr13 49216548 49216823 -70528075 + L1MEc LINE L1 2017 2323 -4073 2114 121 3 19 chr13 49217437 49217750 -70527148 + AluJb SINE Alu 1 308 -4 5688 219 56 79 chr13 49217776 49217823 -70527075 + L1MEc LINE L1 2272 2319 -3896 2013 137 40 0 chr13 49217823 49218123 -70526775 + AluSx SINE Alu 1 312 0 5688 219 56 79 chr13 49218123 49218168 -70526730 + L1MEc LINE L1 2319 2363 -3852 1924 127 25 74 chr13 49218168 49218491 -70526407 + AluJb SINE Alu 1 307 -5 5688 219 56 79 chr13 49218491 49218854 -70526044 + L1MEc LINE L1 2363 2733 -3482 910 129 204 30 chr13 49218854 49219055 -70525843 + MER46A DNA MER2_type 1 236 0 5688 219 56 79 chr13 49219055 49219121 -70525777 + L1MEc LINE L1 2733 2799 -3416 888 215 126 0 chr13 49219121 49219312 -70525586 + MER58C DNA MER1_type 1 215 0 5688 219 56 79 chr13 49219312 49220026 -70524872 + L1MEc LINE L1 2799 3528 -2687 1983 141 36 10 chr13 49220026 49220330 -70524568 + AluJb SINE Alu 1 312 0 5688 219 56 79 chr13 49220330 49221134 -70523764 + L1MEc LINE L1 3528 4269 -1946 535 221 18 55 chr13 49221141 49221304 -70523594 - L1ME1 LINE L1 -124 6042 5886 1587 141 102 18 chr13 49221395 49221678 -70523220 - AluJo SINE Alu -3 309 3 182 238 0 0 chr13 49221686 49221728 -70523170 + L2 LINE L2 2216 2257 -1057 476 139 89 0 chr13 49222753 49222832 -70522066 + L2 LINE L2 3228 3313 0 2289 88 14 3 chr13 49222896 49223193 -70521705 + AluSq SINE Alu 1 300 -13 540 269 87 0 chr13 49224842 49224991 -70519907 + MLT1J2 LTR MaLR 3 164 -286 234 271 17 0 chr13 49225161 49225220 -70519678 + MLT1J1 LTR MaLR 384 443 -3 263 269 29 19 chr13 49225701 49225805 -70519093 + MIR3 SINE MIR 103 207 -1 2146 98 3 17 chr13 49225845 49226140 -70518758 - AluSc SINE Alu -18 291 1 2056 108 0 46 chr13 49226147 49226470 -70518428 - AluSp SINE Alu -5 308 1 909 201 12 0 chr13 49226683 49226852 -70518046 - AluJb SINE Alu -10 302 132 594 253 46 4 chr13 49227564 49227836 -70517062 + L1ME4a LINE L1 5716 6035 -86 1792 171 0 13 chr13 49228300 49228605 -70516293 + AluJb SINE Alu 1 301 -11 347 333 29 0 chr13 49229099 49229204 -70515694 - MIR3 SINE MIR -16 192 85 226 205 238 41 chr13 49229891 49230013 -70514885 + L1ME4a LINE L1 5598 5743 -378 306 245 39 90 chr13 49230141 49230296 -70514602 + L1ME4a LINE L1 5968 6114 -7 2160 126 0 10 chr13 49230668 49230977 -70513921 - AluSx SINE Alu -6 306 1 419 257 57 0 chr13 49231104 49231209 -70513689 + MIR SINE MIR 151 261 -1 886 206 7 7 chr13 49231311 49231466 -70513432 + FRAM SINE Alu 1 155 -11 1070 268 342 12 chr13 49231775 49232693 -70512205 + L2 LINE L2 1259 2479 -835 815 274 131 8 chr13 49232693 49232938 -70511960 + LTR50 LTR ERVL 5 279 -516 565 275 80 13 chr13 49232995 49233244 -70511654 + LTR50 LTR ERVL 271 483 -40 879 252 215 27 chr13 49233244 49233774 -70511124 + L2 LINE L2 2679 3313 0 1311 268 142 18 chr13 49233823 49234476 -70510422 + HAL1b LINE L1 84 817 -531 736 247 188 12 chr13 49234478 49234700 -70510198 + HAL1b LINE L1 870 1052 -296 2388 62 3 32 chr13 49234700 49235009 -70509889 + AluY SINE Alu 1 300 -11 736 247 188 12 chr13 49235009 49235191 -70509707 + HAL1b LINE L1 1052 1345 -3 624 76 9 57 chr13 49235221 49235326 -70509572 + L1MB2 LINE L1 6070 6169 -2 26 50 0 0 chr13 49235326 49235366 -70509532 + AT_rich Low_complexity Low_complexity 1 40 0 357 267 76 8 chr13 49235968 49236099 -70508799 - L1ME LINE L1 -386 5735 5596 2327 88 0 10 chr13 49236128 49236435 -70508463 - AluSg SINE Alu -4 306 3 2692 16 7 3 chr13 49236674 49236979 -70507919 - AluY SINE Alu -5 306 1 23 0 0 0 chr13 49238241 49238264 -70506634 + AT_rich Low_complexity Low_complexity 1 23 0 1027 235 268 20 chr13 49238688 49238860 -70506038 + MLT1G LTR MaLR 1 129 -461 2086 109 0 4 chr13 49238860 49239135 -70505763 + AluSc SINE Alu 3 276 -33 1027 235 268 20 chr13 49239135 49239413 -70505485 + MLT1G LTR MaLR 129 563 -27 228 265 148 43 chr13 49239949 49240111 -70504787 + L2 LINE L2 2056 2234 -1080 331 243 120 117 chr13 49241600 49241900 -70502998 - L1M2 LINE L1 -5832 1017 717 257 287 21 35 chr13 49242084 49242227 -70502671 + C-rich Low_complexity Low_complexity 4 144 0 36 53 0 0 chr13 49242955 49243012 -70501886 + GC_rich Low_complexity Low_complexity 1 57 0 333 0 0 0 chr13 49248735 49248772 -70496126 + (TG)n Simple_repeat Simple_repeat 2 38 0 315 0 0 0 chr13 49249484 49249519 -70495379 + (CA)n Simple_repeat Simple_repeat 2 36 0 340 277 208 0 chr13 49252224 49252325 -70492573 - L2 LINE L2 -2 3270 3149 217 213 131 0 chr13 49252819 49252880 -70492018 - L2 LINE L2 -67 3205 3137 531 218 182 12 chr13 49253415 49253585 -70491313 - MIR SINE MIR -43 219 21 403 252 42 70 chr13 49254114 49254257 -70490641 - L2 LINE L2 -2 3270 3132 428 248 99 0 chr13 49254347 49254468 -70490430 - MIR SINE MIR -127 135 3 193 282 59 35 chr13 49254850 49254935 -70489963 - L2 LINE L2 -54 3218 3132 1575 146 59 4 chr13 49254981 49255235 -70489663 - AluJo SINE Alu -44 268 1 1234 162 4 51 chr13 49255619 49255854 -70489044 + AluJb SINE Alu 72 295 -17 22 0 0 0 chr13 49256473 49256495 -70488403 + AT_rich Low_complexity Low_complexity 1 22 0 451 233 76 8 chr13 49256497 49256642 -70488256 - L1ME4a LINE L1 -7 6114 5961 239 248 53 23 chr13 49256674 49256807 -70488091 - L1ME4a LINE L1 -226 5895 5759 206 95 24 0 chr13 49256808 49256850 -70488048 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 236 79 0 0 chr13 49256857 49256895 -70488003 - L1PA3 LINE L1 -3 6152 6115 278 57 0 75 chr13 49257024 49257077 -70487821 - L1MA3 LINE L1 0 6305 6257 1960 130 7 10 chr13 49257089 49257381 -70487517 - AluJb SINE Alu -19 293 3 318 80 0 0 chr13 49258154 49258204 -70486694 + (CA)n Simple_repeat Simple_repeat 2 51 0 1677 158 14 21 chr13 49260039 49260174 -70484724 + AluJo SINE Alu 1 135 -177 2200 103 0 7 chr13 49260174 49260510 -70484388 + AluY SINE Alu 1 311 0 1677 158 14 21 chr13 49260510 49260658 -70484240 + AluJo SINE Alu 135 282 -30 207 0 0 0 chr13 49260662 49260685 -70484213 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2315 97 7 0 chr13 49261225 49261523 -70483375 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr13 49262047 49262067 -70482831 + (T)n Simple_repeat Simple_repeat 1 20 0 359 243 56 47 chr13 49262512 49262619 -70482279 + MIR SINE MIR 20 127 -81 247 214 159 76 chr13 49262875 49263085 -70481813 - L1ME4a LINE L1 -1 6120 5878 2208 135 0 0 chr13 49263085 49263397 -70481501 - AluSx SINE Alu 0 312 1 247 214 159 76 chr13 49263397 49263475 -70481423 - L1ME4a LINE L1 -243 5878 5808 28 86 0 0 chr13 49263475 49263545 -70481353 + AT_rich Low_complexity Low_complexity 1 70 0 218 276 19 29 chr13 49263667 49263772 -70481126 + (TATG)n Simple_repeat Simple_repeat 4 107 0 2173 113 7 10 chr13 49263935 49264236 -70480662 - AluSg SINE Alu -10 300 1 436 271 117 12 chr13 49264247 49264487 -70480411 - L1ME4a LINE L1 -346 5775 5511 185 343 20 29 chr13 49265231 49265333 -70479565 + MIR SINE MIR 6 106 -156 243 230 0 115 chr13 49265588 49265675 -70479223 - L2 LINE L2 -1 3271 3195 333 212 25 8 chr13 49266377 49266495 -70478403 + CT-rich Low_complexity Low_complexity 2 121 0 1492 267 50 16 chr13 49267265 49267703 -70477195 + L3b LINE CR1 1121 1573 -10 1235 191 19 32 chr13 49268457 49268508 -70476390 - L1MB2 LINE L1 0 6171 6121 1904 147 0 19 chr13 49268508 49268815 -70476083 - AluJo SINE Alu -11 301 1 1235 191 19 32 chr13 49268815 49269078 -70475820 - L1MB2 LINE L1 -50 6121 5861 2138 151 7 6 chr13 49269080 49269542 -70475356 - L1MB2 LINE L1 -546 5625 5161 297 0 0 0 chr13 49269670 49269703 -70475195 + (CA)n Simple_repeat Simple_repeat 2 34 0 305 215 115 62 chr13 49271796 49271926 -70472972 - HAL1b LINE L1 -7 1341 1205 227 213 0 0 chr13 49272012 49272059 -70472839 + (TA)n Simple_repeat Simple_repeat 1 47 0 180 333 0 0 chr13 49272150 49272204 -70472694 + MIR SINE MIR 197 250 -12 649 280 86 48 chr13 49272205 49272659 -70472239 - L1MC/D LINE L1 -2016 5792 5322 2149 106 0 48 chr13 49272863 49273174 -70471724 - AluSx SINE Alu -14 298 3 225 0 0 0 chr13 49274320 49274345 -70470553 + (T)n Simple_repeat Simple_repeat 1 25 0 1437 86 0 16 chr13 49275149 49275376 -70469522 + AluY SINE Alu 101 324 0 275 350 32 32 chr13 49277602 49277725 -70467173 - L2 LINE L2 -11 3302 3180 996 262 73 4 chr13 49278752 49279027 -70465871 - L2 LINE L2 -480 2834 2541 192 77 0 0 chr13 49279300 49279326 -70465572 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 224 293 185 19 chr13 49279649 49279806 -70465092 - MIR SINE MIR -42 220 38 503 267 153 6 chr13 49279854 49280030 -70464868 + MIR SINE MIR 52 253 -9 2255 119 3 0 chr13 49280850 49281152 -70463746 - AluSq SINE Alu -10 303 1 2718 219 78 58 chr13 49281385 49282410 -70462488 + MER69 DNA AcHobo 89 1133 -1393 580 128 0 0 chr13 49282411 49282505 -70462393 + L1PA16 LINE L1 6057 6150 -16 2303 111 0 9 chr13 49282512 49282827 -70462071 + AluSx SINE Alu 1 312 0 7880 49 1 0 chr13 49282877 49284642 -70460256 + L1PA6 LINE L1 4387 6154 0 626 171 92 12 chr13 49284701 49284865 -70460033 + MER69 DNA AcHobo 2347 2523 -3 346 319 157 0 chr13 49284954 49285120 -70459778 + MIR SINE MIR 60 251 -11 234 0 0 0 chr13 49285398 49285424 -70459474 + (CA)n Simple_repeat Simple_repeat 2 27 0 2451 93 0 0 chr13 49285949 49286260 -70458638 + AluSx SINE Alu 2 312 0 208 211 42 99 chr13 49286893 49286964 -70457934 - L2 LINE L2 -5 3308 3242 1695 153 7 45 chr13 49286978 49287286 -70457612 - AluJo SINE Alu -16 296 1 1404 117 21 0 chr13 49287573 49287812 -70457086 - L1MA4 LINE L1 -4 6296 6053 23 54 0 0 chr13 49288351 49288388 -70456510 + AT_rich Low_complexity Low_complexity 1 37 0 2459 61 0 10 chr13 49288787 49289099 -70455799 + AluSc SINE Alu 1 309 0 296 328 31 23 chr13 49289250 49289378 -70455520 + L2 LINE L2 3138 3266 -6 247 380 47 22 chr13 49291518 49291879 -70453019 + L2 LINE L2 2283 2652 -662 2992 112 2 0 chr13 49292088 49292527 -70452371 - L1MB3 LINE L1 -8 6175 5736 212 326 32 32 chr13 49292589 49292684 -70452214 + L2 LINE L2 2712 2806 -508 282 314 95 19 chr13 49292741 49292846 -70452052 - L2 LINE L2 -3 3269 3157 2005 149 3 0 chr13 49293496 49293784 -70451114 - AluSx SINE Alu -23 289 1 2261 103 0 28 chr13 49295488 49295808 -70449090 + AluJb SINE Alu 1 311 -1 207 0 0 0 chr13 49296516 49296539 -70448359 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 216 149 0 85 chr13 49296835 49296882 -70448016 + L2 LINE L2 3271 3313 0 1874 156 69 0 chr13 49297222 49297511 -70447387 - AluSx SINE Alu -3 309 1 41007 30 21 2 chr13 49297823 49303859 -70441039 - L1PA2 LINE L1 0 6155 1 233 160 20 0 chr13 49306040 49306090 -70438808 - MLT2B1 LTR ERVL 0 554 504 1379 206 92 70 chr13 49306131 49306588 -70438310 - MLT2B1 LTR ERVL -53 467 1 25 0 0 0 chr13 49306713 49306738 -70438160 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr13 49307775 49307815 -70437083 + AT_rich Low_complexity Low_complexity 1 40 0 701 142 17 50 chr13 49308000 49308120 -70436778 - FLAM_C SINE Alu -11 132 17 377 258 112 102 chr13 49309973 49310365 -70434533 + MLT1L LTR MaLR 6 401 -214 901 171 84 46 chr13 49310706 49310901 -70433997 - MER63 DNA MER1_type -16 1045 838 1651 153 13 67 chr13 49310901 49311215 -70433683 - AluJo SINE Alu -15 297 1 901 171 84 46 chr13 49311215 49311258 -70433640 - MER63 DNA MER1_type -223 838 798 2595 96 2 5 chr13 49311258 49311653 -70433245 - L1M2 LINE L1 -584 5707 5314 1738 179 4 0 chr13 49312635 49312915 -70431983 - AluJo SINE Alu -31 281 1 1525 184 70 27 chr13 49313373 49313704 -70431194 - MLT1A1 LTR MaLR 0 365 21 744 185 99 0 chr13 49313719 49313870 -70431028 - AluJo SINE Alu -97 215 50 553 259 17 32 chr13 49314089 49314253 -70430645 - MIR SINE MIR -66 142 3 222 241 43 139 chr13 49315948 49316135 -70428763 + MIR SINE MIR 21 190 -18 1986 102 88 0 chr13 49316759 49317033 -70427865 - AluSx SINE Alu -14 298 1 1295 137 13 4 chr13 49317049 49317275 -70427623 - L1MB3 LINE L1 -7 6176 5949 494 274 173 10 chr13 49319189 49319397 -70425501 + MIR SINE MIR 7 248 -14 1430 233 7 3 chr13 49320394 49320686 -70424212 + AluJb SINE Alu 2 294 -18 324 0 0 0 chr13 49320689 49320725 -70424173 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1928 148 122 26 chr13 49320860 49321286 -70423612 - MLT1C LTR MaLR 0 467 1 571 284 42 21 chr13 49322166 49322402 -70422496 + L1ME4a LINE L1 5637 5877 -244 1963 159 0 0 chr13 49322506 49322802 -70422096 - AluJo SINE Alu -16 296 1 203 179 0 0 chr13 49323890 49323929 -70420969 + T-rich Low_complexity Low_complexity 3 41 0 289 100 0 0 chr13 49324934 49324974 -70419924 + MADE1 DNA Mariner 1 40 -40 356 241 73 125 chr13 49325084 49325316 -70419582 - L1MC4 LINE L1 -1 8041 7822 753 237 12 43 chr13 49325353 49325610 -70419288 - L1ME2 LINE L1 -10 6154 5906 880 103 0 0 chr13 49325777 49325894 -70419004 - AluSq/x SINE Alu -196 117 1 268 284 0 0 chr13 49326342 49326409 -70418489 + CT-rich Low_complexity Low_complexity 2 68 0 2140 136 0 0 chr13 49327813 49328107 -70416791 - AluSx SINE Alu -18 294 1 265 327 0 19 chr13 49328219 49328326 -70416572 - L3b LINE CR1 -202 1381 1277 2424 80 0 3 chr13 49329128 49329427 -70415471 + AluSc SINE Alu 1 298 -11 332 48 0 0 chr13 49329639 49329681 -70415217 + MER4E LTR ERV1 653 694 -72 201 361 0 0 chr13 49329821 49329882 -70415016 + MIR SINE MIR 42 102 -106 41 48 0 0 chr13 49330204 49330266 -70414632 + AT_rich Low_complexity Low_complexity 1 62 0 427 264 158 10 chr13 49330318 49330610 -70414288 - L1MEc LINE L1 -4709 1687 1353 7076 227 55 26 chr13 49330614 49335096 -70409802 + L1MB7 LINE L1 118 4827 -1817 1110 142 124 34 chr13 49335096 49335294 -70409604 + Tigger2 DNA MER2_type 1 180 -2538 1868 162 0 9 chr13 49335294 49335609 -70409289 - AluJb SINE Alu 0 312 1 1110 142 124 34 chr13 49335609 49335792 -70409106 + Tigger2 DNA MER2_type 180 2718 0 1210 170 9 9 chr13 49335845 49336057 -70408841 - AluJb SINE Alu -16 296 85 4484 187 36 9 chr13 49336057 49337808 -70407090 + L1MB7 LINE L1 4870 6663 -19 1373 178 127 0 chr13 49337810 49338164 -70406734 + L1MC3 LINE L1 7387 7785 0 1786 154 14 7 chr13 49338169 49338461 -70406437 + AluSq SINE Alu 1 294 -19 667 108 0 0 chr13 49338688 49338790 -70406108 + L1PA14 LINE L1 6060 6161 0 1163 167 152 60 chr13 49339390 49339659 -70405239 + AluJo SINE Alu 1 294 -8 639 197 57 8 chr13 49343134 49343256 -70401642 - L2 LINE L2 -4 3309 3182 746 225 24 62 chr13 49343256 49343465 -70401433 + MIR SINE MIR 46 246 -16 198 242 45 45 chr13 49343971 49344037 -70400861 + MIR3 SINE MIR 100 165 -43 390 282 122 19 chr13 49344846 49345002 -70399896 - MIR3 SINE MIR -5 203 32 221 267 0 0 chr13 49345237 49345282 -70399616 - MIR SINE MIR -71 137 93 222 259 17 0 chr13 49345295 49345353 -70399545 - L2 LINE L2 -6 3307 3249 2099 134 0 0 chr13 49346487 49346791 -70398107 - AluSx SINE Alu 0 304 1 180 0 0 0 chr13 49347141 49347161 -70397737 + (TA)n Simple_repeat Simple_repeat 1 20 0 203 265 0 0 chr13 49347171 49347220 -70397678 + (TATG)n Simple_repeat Simple_repeat 3 51 0 852 124 35 41 chr13 49347737 49347906 -70396992 + L1MB2 LINE L1 5624 5791 -380 1885 123 17 3 chr13 49347922 49348224 -70396674 + L1MB2 LINE L1 5864 6169 -2 618 172 95 0 chr13 49348229 49348345 -70396553 + MER5B DNA MER1_type 52 178 0 21 36 0 0 chr13 49348847 49348875 -70396023 + AT_rich Low_complexity Low_complexity 1 28 0 2457 160 20 0 chr13 49348904 49349442 -70395456 - L1MA9 LINE L1 -22 6290 5646 180 0 0 0 chr13 49349462 49349482 -70395416 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2410 69 36 3 chr13 49350262 49350595 -70394303 + THE1A LTR MaLR 1 344 -11 12016 78 11 3 chr13 49350614 49352182 -70392716 + THE1A-int LTR MaLR 1 1580 0 2724 79 0 38 chr13 49352182 49352419 -70392479 + THE1A LTR MaLR 1 221 -134 2367 101 0 0 chr13 49352419 49352715 -70392183 + AluSg SINE Alu 4 299 -11 2724 79 0 38 chr13 49352715 49352846 -70392052 + THE1A LTR MaLR 221 355 0 210 245 41 0 chr13 49352968 49353017 -70391881 + L2 LINE L2 3262 3312 -1 516 258 18 42 chr13 49353110 49353277 -70391621 + MIR SINE MIR 46 208 -54 201 39 0 0 chr13 49353746 49353772 -70391126 + (TG)n Simple_repeat Simple_repeat 2 27 0 374 250 67 0 chr13 49355127 49355231 -70389667 + MIR SINE MIR 93 203 -59 425 295 87 35 chr13 49355540 49355752 -70389146 - MIR3 SINE MIR -42 220 1 341 226 39 59 chr13 49356734 49356836 -70388062 + L2 LINE L2 3209 3308 -5 287 176 0 59 chr13 49356887 49356972 -70387926 + L1MC5 LINE L1 7832 7911 -50 2198 110 0 0 chr13 49357320 49357611 -70387287 - AluSq SINE Alu -22 291 1 2120 146 0 3 chr13 49357616 49357925 -70386973 - AluSx SINE Alu -4 308 1 1769 158 3 24 chr13 49358462 49358754 -70386144 + AluJo SINE Alu 6 291 -21 216 97 0 0 chr13 49358754 49358785 -70386113 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 3419 186 52 14 chr13 49358802 49359431 -70385467 + MER82 DNA MER2_type 1 653 0 23 0 0 0 chr13 49359598 49359621 -70385277 + AT_rich Low_complexity Low_complexity 1 23 0 5987 118 43 4 chr13 49360540 49361478 -70383420 + Tigger3b DNA MER2_type 1 974 -257 588 275 81 31 chr13 49362265 49362523 -70382375 + L2 LINE L2 3041 3311 -2 507 333 24 6 chr13 49362765 49362930 -70381968 + MIR3 SINE MIR 31 198 -10 243 0 0 0 chr13 49363335 49363362 -70381536 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 2020 128 0 4 chr13 49363362 49363643 -70381255 - AluSx SINE Alu -32 280 1 24 0 0 0 chr13 49363643 49363667 -70381231 + AT_rich Low_complexity Low_complexity 1 24 0 1980 141 16 0 chr13 49363783 49364088 -70380810 - AluSx SINE Alu -1 311 2 23 54 0 0 chr13 49365036 49365073 -70379825 + AT_rich Low_complexity Low_complexity 1 37 0 329 212 106 0 chr13 49365341 49365426 -70379472 + MER103 DNA DNA 10 103 -63 423 279 55 38 chr13 49365620 49365803 -70379095 + L2 LINE L2 2772 2957 -357 2138 103 7 17 chr13 49365818 49366108 -70378790 - AluSc SINE Alu -18 291 5 210 188 42 42 chr13 49366744 49366792 -70378106 - MIR3 SINE MIR -49 159 112 303 208 56 0 chr13 49366799 49366871 -70378027 - MER91C DNA MER1_type -32 108 33 214 176 0 0 chr13 49366881 49366915 -70377983 - MIR SINE MIR -89 119 86 324 321 109 30 chr13 49367040 49367305 -70377593 + L3 LINE CR1 833 1118 -459 255 159 23 0 chr13 49367401 49367445 -70377453 + MIR SINE MIR 218 262 0 327 179 0 0 chr13 49367643 49367710 -70377188 + CT-rich Low_complexity Low_complexity 3 69 0 568 252 189 37 chr13 49367862 49368132 -70376766 - L2 LINE L2 -4 3268 2958 1838 181 0 10 chr13 49368203 49368506 -70376392 - AluJo SINE Alu -9 303 4 284 318 63 16 chr13 49369662 49369788 -70375110 - L2 LINE L2 -18 3295 3164 803 254 46 171 chr13 49369821 49370582 -70374316 - L2 LINE L2 -848 2466 1801 333 0 0 0 chr13 49371876 49371913 -70372985 + (CA)n Simple_repeat Simple_repeat 2 38 0 2544 62 3 3 chr13 49372089 49372394 -70372504 + AluSp SINE Alu 1 305 -8 290 160 0 53 chr13 49373085 49373160 -70371738 - L1ME4a LINE L1 -3 6118 6048 240 35 0 0 chr13 49373818 49373847 -70371051 + (CA)n Simple_repeat Simple_repeat 1 29 0 7839 46 0 0 chr13 49373891 49374962 -70369936 + L1PA6 LINE L1 5078 6148 -6 473 291 16 0 chr13 49375153 49375280 -70369618 - L1ME3A LINE L1 -98 6072 5944 843 277 182 9 chr13 49375330 49375872 -70369026 + LTR50 LTR ERVL 46 771 -24 868 292 82 19 chr13 49376032 49376347 -70368551 - HAL1 LINE L1 -529 1978 1644 1149 257 82 14 chr13 49376359 49377340 -70367558 - HAL1 LINE L1 -913 1594 419 947 257 28 28 chr13 49377389 49377673 -70367225 - HAL1 LINE L1 -2223 284 1 216 0 0 0 chr13 49377702 49377726 -70367172 + (T)n Simple_repeat Simple_repeat 1 24 0 1970 65 19 27 chr13 49377847 49378107 -70366791 - AluY SINE Alu -15 296 39 1158 295 53 28 chr13 49379144 49379652 -70365246 + MLT1K LTR MaLR 66 586 -2 2429 71 0 3 chr13 49379980 49380276 -70364622 - AluY SINE Alu -16 295 1 777 98 0 0 chr13 49380693 49380805 -70364093 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 2115 98 14 4 chr13 49380807 49381084 -70363814 - AluSq SINE Alu -32 281 2 385 190 25 0 chr13 49381169 49381248 -70363650 - L1MB7 LINE L1 0 6184 6104 368 125 80 0 chr13 49381423 49381511 -70363387 + L1ME4a LINE L1 6023 6117 -4 2208 86 0 24 chr13 49381675 49381989 -70362909 - AluSq SINE Alu 0 307 1 25 31 0 0 chr13 49381990 49382022 -70362876 + AT_rich Low_complexity Low_complexity 1 32 0 2186 62 0 0 chr13 49382680 49382985 -70361913 - AluY SINE Alu 0 331 27 22 35 0 0 chr13 49383432 49383461 -70361437 + AT_rich Low_complexity Low_complexity 1 29 0 246 32 0 0 chr13 49383922 49383953 -70360945 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1874 124 19 0 chr13 49383964 49384231 -70360667 - AluSx SINE Alu -40 272 1 403 334 45 51 chr13 49385638 49385875 -70359023 + MIR SINE MIR 3 256 -6 1885 143 6 30 chr13 49387452 49387781 -70357117 - L1MA7 LINE L1 -2 6289 5969 264 330 77 19 chr13 49389911 49390120 -70354778 - L2 LINE L2 -969 2345 2125 2444 78 0 0 chr13 49390941 49391235 -70353663 + AluSc SINE Alu 1 294 -15 1556 178 36 7 chr13 49391530 49391811 -70353087 + AluJo SINE Alu 5 293 -19 995 329 55 31 chr13 49392565 49393076 -70351822 - L3 LINE CR1 -517 1060 538 5741 113 19 7 chr13 49393082 49393952 -70350946 - Tigger3(Golem) DNA MER2_type -1 3028 2148 588 198 0 27 chr13 49393981 49394092 -70350806 - Tigger3(Golem) DNA MER2_type -2921 108 1 268 254 11 0 chr13 49394686 49394863 -70350035 + (CA)n Simple_repeat Simple_repeat 2 180 0 844 203 92 0 chr13 49395016 49395179 -70349719 + MER45A DNA AcHobo 1 178 0 4222 138 14 60 chr13 49395411 49396134 -70348764 - LTR8 LTR ERV1 0 691 2 2354 108 0 9 chr13 49396201 49396516 -70348382 - AluSx SINE Alu 0 312 1 763 224 35 80 chr13 49396584 49396897 -70348001 - L2 LINE L2 -10 3303 3005 326 229 0 12 chr13 49397741 49397824 -70347074 + LTR33A LTR ERVL 426 507 -16 1220 168 84 4 chr13 49398059 49398309 -70346589 - L1MA9 LINE L1 -32 6280 6011 1404 124 10 0 chr13 49398345 49398554 -70346344 - L1PA14 LINE L1 0 6161 5951 380 265 12 59 chr13 49398718 49398888 -70346010 - HAL1b LINE L1 -437 911 750 234 191 0 0 chr13 49399249 49399296 -70345602 + T-rich Low_complexity Low_complexity 1 47 0 410 318 112 12 chr13 49399355 49399597 -70345301 - HAL1 LINE L1 -578 1929 1664 277 299 57 25 chr13 49400310 49400467 -70344431 - MIR3 SINE MIR -27 181 20 306 0 0 0 chr13 49401416 49401450 -70343448 + (A)n Simple_repeat Simple_repeat 1 34 0 317 339 162 44 chr13 49401941 49402330 -70342568 + L2 LINE L2 2824 3258 -14 1605 312 71 14 chr13 49402584 49403242 -70341656 - L3 LINE CR1 -2 1575 880 21 0 0 0 chr13 49403409 49403430 -70341468 + AT_rich Low_complexity Low_complexity 1 21 0 311 308 9 0 chr13 49403622 49403729 -70341169 + MARNA DNA Mariner 141 248 -338 27 0 0 0 chr13 49404284 49404311 -70340587 + AT_rich Low_complexity Low_complexity 1 27 0 4314 106 21 32 chr13 49405352 49406128 -70338770 - L1PB1 LINE L1 -16 6150 5333 558 220 57 40 chr13 49407279 49407362 -70337536 - MER104 DNA Tc2 -1718 180 100 1697 194 40 48 chr13 49407362 49407760 -70337138 - MLT2C1 LTR ERVL -2 395 1 558 220 57 40 chr13 49407760 49407853 -70337045 - MER104 DNA Tc2 -1798 100 1 282 262 164 16 chr13 49407980 49408102 -70336796 - MIR3 SINE MIR -56 152 13 868 281 83 67 chr13 49408389 49408884 -70336014 + LTR33A LTR ERVL 3 505 -18 1474 142 46 0 chr13 49408982 49409242 -70335656 - MSTB LTR MaLR 0 426 155 975 113 0 0 chr13 49409419 49409561 -70335337 - MSTB LTR MaLR -284 142 1 198 337 22 45 chr13 49409661 49409750 -70335148 - MIR SINE MIR -91 117 31 319 341 121 14 chr13 49409759 49409982 -70334916 + MIR SINE MIR 6 252 -10 2283 104 10 0 chr13 49410158 49410466 -70334432 + AluSx SINE Alu 1 311 -1 240 192 0 19 chr13 49411807 49411859 -70333039 + CT-rich Low_complexity Low_complexity 2 52 0 26826 93 3 15 chr13 49411905 49416925 -70327973 - L1PA7 LINE L1 0 6154 1178 3502 243 58 66 chr13 49417181 49418893 -70326005 + L1ME4a LINE L1 44 1767 -4313 2138 103 14 7 chr13 49418893 49419183 -70325715 + AluSc SINE Alu 1 292 -17 3502 243 58 66 chr13 49419183 49419287 -70325611 + L1ME4a LINE L1 1767 1870 -4210 270 0 0 0 chr13 49419287 49419317 -70325581 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 702 113 0 0 chr13 49419316 49419422 -70325476 + (TA)n Simple_repeat Simple_repeat 1 106 0 3502 243 58 66 chr13 49419317 49419467 -70325431 + L1ME4a LINE L1 1870 2020 -4060 2204 104 16 0 chr13 49419467 49419774 -70325124 + AluSx SINE Alu 1 312 0 3502 243 58 66 chr13 49419774 49421223 -70323675 + L1ME4a LINE L1 2020 3289 -2791 28 29 0 0 chr13 49421418 49421453 -70323445 + AT_rich Low_complexity Low_complexity 1 35 0 8648 178 28 8 chr13 49421453 49423607 -70321291 - L1PA15 LINE L1 -1 6164 3997 2221 101 0 7 chr13 49423607 49423903 -70320995 - AluSq SINE Alu -19 294 1 8648 178 28 8 chr13 49423903 49424335 -70320563 - L1PA15 LINE L1 -2168 3997 3575 4863 126 1 3 chr13 49424402 49425138 -70319760 - L1PA16 LINE L1 -9 6157 5423 2160 200 68 29 chr13 49425139 49425940 -70318958 + L1ME4a LINE L1 5001 5876 -224 668 321 127 3 chr13 49425998 49426359 -70318539 - L2 LINE L2 -969 2345 1940 28 29 0 0 chr13 49426516 49426551 -70318347 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr13 49426673 49426719 -70318179 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr13 49426906 49426936 -70317962 + AT_rich Low_complexity Low_complexity 1 30 0 388 247 119 44 chr13 49428054 49428226 -70316672 + MIR SINE MIR 6 184 -63 545 280 119 13 chr13 49430041 49430277 -70314621 + MIR SINE MIR 2 262 0 247 229 0 0 chr13 49430530 49430591 -70314307 + L1ME4a LINE L1 5922 5982 -73 1462 130 56 53 chr13 49431510 49431833 -70313065 + MER33 DNA MER1_type 1 324 0 350 262 56 9 chr13 49431862 49431969 -70312929 + MIR SINE MIR 69 180 -82 32 0 0 0 chr13 49431982 49432014 -70312884 + AT_rich Low_complexity Low_complexity 1 32 0 4663 225 45 18 chr13 49433499 49434215 -70310683 + L1M4 LINE L1 3317 4012 -2134 1981 148 0 3 chr13 49434215 49434528 -70310370 + AluSx SINE Alu 1 312 0 4663 225 45 18 chr13 49434528 49435327 -70309571 + L1M4 LINE L1 4012 4948 -1198 187 365 75 13 chr13 49436227 49436386 -70308512 - L2 LINE L2 -996 2318 2150 3481 137 9 6 chr13 49436537 49437061 -70307837 + MER1A DNA MER1_type 2 527 0 1738 165 41 48 chr13 49437624 49438017 -70306881 - MLT1B LTR MaLR 0 390 1 225 233 0 0 chr13 49438050 49438093 -70306805 + L2 LINE L2 3267 3309 -4 375 235 151 17 chr13 49438433 49438552 -70306346 - MIR3 SINE MIR -59 149 15 2975 220 56 32 chr13 49439205 49440801 -70304097 - L1ME1 LINE L1 -4 6162 4532 395 219 144 64 chr13 49440860 49441047 -70303851 - Charlie7 DNA MER1_type -2367 245 44 358 312 86 62 chr13 49442127 49442250 -70302648 + L2 LINE L2 2723 2841 -472 2011 132 3 14 chr13 49442250 49442546 -70302352 - AluSx SINE Alu -19 293 1 358 312 86 62 chr13 49442546 49442915 -70301983 + L2 LINE L2 2841 3242 -71 1460 111 0 0 chr13 49442930 49443119 -70301779 + AluSx SINE Alu 1 189 -123 226 275 33 11 chr13 49443122 49443213 -70301685 + CT-rich Low_complexity Low_complexity 4 96 0 301 310 165 37 chr13 49443241 49443593 -70301305 + L2 LINE L2 2115 2511 -803 694 307 12 90 chr13 49443897 49444242 -70300656 - L2 LINE L2 -12 3260 2943 400 248 64 0 chr13 49445180 49445289 -70299609 - MER46C DNA MER2_type -14 324 209 360 189 144 27 chr13 49445345 49445456 -70299442 - MER46C DNA MER2_type -214 124 1 393 265 16 81 chr13 49445919 49446104 -70298794 + MIR SINE MIR 20 192 -70 248 323 217 5 chr13 49446253 49446442 -70298456 - MIR SINE MIR -12 250 22 1867 137 53 66 chr13 49447037 49447416 -70297482 + THE1C LTR MaLR 2 375 0 387 295 41 16 chr13 49447873 49447995 -70296903 - L2 LINE L2 -5 3267 3143 236 211 9 101 chr13 49448218 49448327 -70296571 + L1MC4 LINE L1 6605 6703 -1339 265 265 229 9 chr13 49448340 49448676 -70296222 - L1ME4a LINE L1 -9 6112 5703 225 172 0 94 chr13 49448704 49448768 -70296130 + T-rich Low_complexity Low_complexity 1 58 0 7716 20 4 0 chr13 49448769 49449790 -70295108 - L1PA3 LINE L1 -3 6152 5130 544 238 20 0 chr13 49449791 49449938 -70294960 - L1ME4a LINE L1 -452 5669 5520 980 92 15 0 chr13 49450047 49450178 -70294720 - AluSc SINE Alu -11 298 166 311 318 70 8 chr13 49450180 49450309 -70294589 - L1ME4a LINE L1 -2413 5395 5259 204 381 138 13 chr13 49450671 49450902 -70293996 - L2 LINE L2 -337 2977 2718 1877 152 42 3 chr13 49451047 49451330 -70293568 + AluJo SINE Alu 1 294 -18 2049 112 0 0 chr13 49451429 49451735 -70293163 + AluSx SINE Alu 14 319 0 380 295 98 23 chr13 49451752 49451925 -70292973 + MIR3 SINE MIR 16 201 -7 2069 109 3 36 chr13 49453035 49453338 -70291560 - AluSq SINE Alu -19 294 2 658 344 113 9 chr13 49453832 49454178 -70290720 + L3 LINE CR1 256 637 -940 317 311 46 76 chr13 49454199 49454437 -70290461 - MLT1I LTR MaLR 0 409 179 315 318 47 56 chr13 49454611 49454718 -70290180 + MIR SINE MIR 40 145 -63 541 99 0 12 chr13 49455451 49455532 -70289366 + MADE1 DNA Mariner 1 80 0 2533 21 0 0 chr13 49455554 49455838 -70289060 - AluYb8 SINE Alu 0 318 35 281 310 51 58 chr13 49455839 49455900 -70288998 - HAL1b LINE L1 -630 718 658 1445 188 75 10 chr13 49455900 49456193 -70288705 - AluJb SINE Alu 0 312 1 281 310 51 58 chr13 49456193 49456405 -70288493 - HAL1b LINE L1 -690 658 447 396 321 91 0 chr13 49460505 49460670 -70284228 - MIR3 SINE MIR -16 192 13 279 235 136 0 chr13 49460749 49460830 -70284068 - MIR SINE MIR -87 175 84 1613 63 0 5 chr13 49461120 49461325 -70283573 - L1P2 LINE L1 -349 5805 5602 1920 86 0 0 chr13 49461325 49461546 -70283352 + L1PA6 LINE L1 5912 6143 -11 2297 114 0 0 chr13 49462007 49462314 -70282584 - AluSg SINE Alu -3 307 1 1661 174 11 3 chr13 49462853 49463150 -70281748 - L1MB2 LINE L1 -121 6047 5736 349 305 33 8 chr13 49463186 49463300 -70281598 + MIR SINE MIR 3 115 -93 25 0 0 0 chr13 49463300 49463325 -70281573 + AT_rich Low_complexity Low_complexity 1 25 0 608 86 0 11 chr13 49463727 49463820 -70281078 + (TCCC)n Simple_repeat Simple_repeat 4 95 0 804 318 25 7 chr13 49463889 49464169 -70280729 - L1ME LINE L1 -441 5729 5445 389 282 86 73 chr13 49464871 49465091 -70279807 - L2 LINE L2 -220 3052 2830 729 279 117 22 chr13 49466105 49466421 -70278477 + MLT1J LTR MaLR 22 367 -144 357 261 112 75 chr13 49466835 49467103 -70277795 - MLT1J LTR MaLR -2 509 232 2735 248 70 32 chr13 49467156 49468031 -70276867 - L1ME3A LINE L1 -9 6161 5254 1142 115 0 0 chr13 49468034 49468190 -70276708 - MLT1B LTR MaLR 0 390 235 1310 264 71 33 chr13 49469036 49469460 -70275438 - LTR16B LTR ERVL -17 447 8 2427 101 0 0 chr13 49469491 49469798 -70275100 + AluSx SINE Alu 1 307 -5 562 271 55 15 chr13 49473609 49473808 -70271090 - MER112 DNA MER1_type -5 255 49 227 83 0 28 chr13 49475098 49475134 -70269764 - LTR27 LTR ERV1 -104 532 498 220 224 0 0 chr13 49476601 49476650 -70268248 + A-rich Low_complexity Low_complexity 1 49 0 190 167 130 0 chr13 49477607 49477661 -70267237 + MIR SINE MIR 40 100 -108 247 239 60 0 chr13 49478070 49478137 -70266761 + L2 LINE L2 3235 3305 -8 211 176 39 0 chr13 49478286 49478337 -70266561 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 399 261 30 52 chr13 49479144 49479278 -70265620 + L2 LINE L2 3142 3272 0 4788 150 73 10 chr13 49479533 49480385 -70264513 - L1MB3 LINE L1 -4 6179 5264 618 88 0 0 chr13 49480385 49480465 -70264433 + MADE1 DNA Mariner 1 80 0 4788 150 73 10 chr13 49480465 49480509 -70264389 - L1MB3 LINE L1 -919 5264 5224 3999 242 21 10 chr13 49480495 49481531 -70263367 - L1MB3 LINE L1 -1556 4590 3543 * 2443 271 102 15 chr13 49481498 49482361 -70262537 - L1MEc LINE L1 -5282 1114 177 * 322 347 33 0 chr13 49482401 49482522 -70262376 - L1MEc LINE L1 -5944 261 137 1707 165 57 9 chr13 49484401 49484717 -70260181 + MLT1C LTR MaLR 2 332 -135 1412 237 15 26 chr13 49484714 49484729 -70260169 + MLT1C LTR MaLR 130 144 -323 * 2532 134 22 6 chr13 49484729 49485088 -70259810 - MLT1A1 LTR MaLR 0 365 1 1412 237 15 26 chr13 49485088 49485414 -70259484 + MLT1C LTR MaLR 144 467 0 328 358 67 65 chr13 49486048 49486512 -70258386 + L2 LINE L2 2804 3268 -4 * 638 284 17 30 chr13 49486510 49486742 -70258156 - L2 LINE L2 0 3313 3085 242 324 112 39 chr13 49486908 49487087 -70257811 - MIR SINE MIR -32 230 39 527 289 22 101 chr13 49487117 49487216 -70257682 - L2 LINE L2 -8 3305 3200 4517 130 25 12 chr13 49487216 49487908 -70256990 + L1MB3 LINE L1 5483 6183 0 527 289 22 101 chr13 49487908 49488085 -70256813 - L2 LINE L2 -113 3200 3051 181 366 24 0 chr13 49489005 49489128 -70255770 - L2 LINE L2 -593 2721 2596 231 61 0 0 chr13 49489956 49489989 -70254909 + (CA)n Simple_repeat Simple_repeat 2 34 0 1298 155 16 52 chr13 49490081 49490333 -70254565 - L1MC/D LINE L1 -570 5789 5547 46 33 0 0 chr13 49490338 49490398 -70254500 + AT_rich Low_complexity Low_complexity 1 60 0 434 183 12 0 chr13 49490551 49490633 -70254265 - MLT1A2 LTR MaLR -4 370 288 1155 163 25 5 chr13 49490830 49491033 -70253865 + MER20 DNA MER1_type 13 219 0 210 97 32 0 chr13 49492148 49492179 -70252719 + MIR SINE MIR 113 144 -118 1477 214 41 6 chr13 49492184 49492502 -70252396 - MER46C DNA MER2_type -7 331 3 24 0 0 0 chr13 49492639 49492663 -70252235 + AT_rich Low_complexity Low_complexity 1 24 0 214 116 93 0 chr13 49492694 49492737 -70252161 + CT-rich Low_complexity Low_complexity 4 50 0 302 159 32 0 chr13 49492772 49492835 -70252063 + CT-rich Low_complexity Low_complexity 3 67 0 222 118 0 0 chr13 49492859 49492893 -70252005 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 204 125 0 0 chr13 49493272 49493304 -70251594 + (CAG)n Simple_repeat Simple_repeat 1 32 0 201 147 0 0 chr13 49493496 49493530 -70251368 + (T)n Simple_repeat Simple_repeat 1 34 0 248 229 128 18 chr13 49494802 49494911 -70249987 - L1ME4a LINE L1 -41 6080 5960 686 296 46 11 chr13 49494998 49495282 -70249616 - L1ME4a LINE L1 -296 5825 5532 225 132 0 0 chr13 49495494 49495532 -70249366 + (T)n Simple_repeat Simple_repeat 1 38 0 200 204 23 0 chr13 49496286 49496330 -70248568 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 1149 280 69 83 chr13 49496892 49497459 -70247439 - MER77 LTR ERV1 -6 599 41 1827 134 3 77 chr13 49497548 49497921 -70246977 - MER4A LTR ERV1 0 664 261 729 81 0 10 chr13 49497921 49498020 -70246878 - MER4A LTR ERV1 -566 98 1 474 292 16 25 chr13 49498331 49498574 -70246324 + L1MDa LINE L1 1857 2108 -4443 2621 160 5 0 chr13 49498671 49499072 -70245826 - MER57A LTR ERV1 0 403 1 210 37 0 0 chr13 49499969 49499996 -70244902 + (TG)n Simple_repeat Simple_repeat 2 28 0 208 213 347 0 chr13 49500728 49500803 -70244095 - MIR SINE MIR -31 231 131 337 289 173 5 chr13 49501168 49501253 -70243645 + L1MC4 LINE L1 7584 7653 -389 189 0 0 0 chr13 49501253 49501274 -70243624 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 337 289 173 5 chr13 49501274 49501396 -70243502 + L1MC4 LINE L1 7653 7826 -216 258 246 97 9 chr13 49501407 49501521 -70243377 + L1MC4 LINE L1 7918 8041 -1 305 191 0 71 chr13 49501557 49501683 -70243215 + T-rich Low_complexity Low_complexity 5 121 0 183 42 0 0 chr13 49502453 49502477 -70242421 + (TA)n Simple_repeat Simple_repeat 1 24 0 2259 141 5 25 chr13 49502529 49502897 -70242001 + MLT1B LTR MaLR 30 390 0 702 292 52 17 chr13 49506169 49506402 -70238496 - MIR SINE MIR -14 248 8 257 250 10 48 chr13 49506837 49506941 -70237957 + MIR SINE MIR 107 206 -56 1790 253 97 4 chr13 49507061 49507536 -70237362 - LTR33 LTR ERVL -2 519 1 1647 261 121 21 chr13 49507856 49508470 -70236428 + L1ME1 LINE L1 83 757 -5313 746 213 53 92 chr13 49508473 49508853 -70236045 + L1ME1 LINE L1 2921 3285 -2795 613 311 58 9 chr13 49508862 49509087 -70235811 - MERVL LTR ERVL -504 4981 4746 324 212 74 50 chr13 49509394 49509566 -70235332 + MLT1J2 LTR MaLR 68 243 -166 241 234 0 65 chr13 49509618 49509695 -70235203 + MLT1J2 LTR MaLR 377 448 -2 270 0 0 0 chr13 49510218 49510248 -70234650 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 184 228 0 0 chr13 49510450 49510497 -70234401 - MIR SINE MIR -108 154 109 3688 130 2 26 chr13 49510609 49511149 -70233749 - MER1A DNA MER1_type 0 527 1 3086 222 60 44 chr13 49511149 49512830 -70232068 + L1ME1 LINE L1 4387 6095 -5 565 302 49 22 chr13 49512898 49513123 -70231775 + MIR SINE MIR 31 261 -1 499 302 31 78 chr13 49513100 49513355 -70231543 - MIR SINE MIR -10 252 10 * 321 202 149 43 chr13 49513514 49513608 -70231290 + MLT1J1 LTR MaLR 3 106 -303 4605 106 120 131 chr13 49513608 49515027 -70229871 + pTR5 LTR ERV1 743 2438 0 389 274 157 24 chr13 49515030 49515302 -70229596 + MLT1J2 LTR MaLR 103 437 -13 1916 110 8 11 chr13 49515548 49515812 -70229086 - AluSg SINE Alu -15 295 33 260 217 27 27 chr13 49516674 49516735 -70228163 - MIR3 SINE MIR -44 164 103 437 277 62 0 chr13 49516735 49516865 -70228033 + MER5C DNA MER1_type 2 139 -185 3255 173 35 21 chr13 49516922 49517574 -70227324 - L1MC3 LINE L1 0 7785 7125 308 202 155 0 chr13 49517580 49517664 -70227234 + MER5C DNA MER1_type 228 324 0 514 250 0 0 chr13 49518001 49518113 -70226785 - LTR16A LTR ERVL -108 342 231 229 258 72 31 chr13 49518280 49518377 -70226521 - LTR16A1 LTR ERVL -356 101 1 589 281 18 6 chr13 49519419 49519590 -70225308 - MIR SINE MIR 0 262 90 407 250 214 0 chr13 49520935 49521047 -70223851 - MIR3 SINE MIR -54 154 19 311 259 15 96 chr13 49521481 49521616 -70223282 - MIR SINE MIR -119 143 20 366 273 93 35 chr13 49521625 49521791 -70223107 - MER5A DNA MER1_type 0 189 1 311 175 9 53 chr13 49523135 49523249 -70221649 + CT-rich Low_complexity Low_complexity 3 111 0 1659 174 18 81 chr13 49523262 49523646 -70221252 + MLT1A2 LTR MaLR 15 374 0 350 136 30 0 chr13 49523900 49523966 -70220932 + CT-rich Low_complexity Low_complexity 3 70 0 606 245 38 6 chr13 49525565 49525724 -70219174 - MIR SINE MIR 0 262 99 457 232 161 0 chr13 49526223 49526335 -70218563 + FLAM_A SINE Alu 4 133 0 180 325 24 12 chr13 49527000 49527083 -70217815 - MIR3 SINE MIR -54 154 71 541 289 39 100 chr13 49528261 49528642 -70216256 - L2 LINE L2 0 3272 2915 315 0 0 0 chr13 49530917 49530952 -70213946 + (TG)n Simple_repeat Simple_repeat 2 36 0 254 284 53 11 chr13 49531986 49532081 -70212817 - L2 LINE L2 -204 3068 2970 261 270 216 9 chr13 49532442 49532517 -70212381 + L2 LINE L2 3138 3196 -76 1847 124 199 10 chr13 49532517 49532823 -70212075 - THE1B LTR MaLR 0 364 1 261 270 216 9 chr13 49532823 49532858 -70212040 + L2 LINE L2 3196 3271 -1 682 291 80 8 chr13 49535353 49535590 -70209308 + MIR SINE MIR 1 254 -8 206 248 30 20 chr13 49535628 49535729 -70209169 + (TTAA)n Simple_repeat Simple_repeat 4 105 0 21 57 0 0 chr13 49535781 49535816 -70209082 + AT_rich Low_complexity Low_complexity 1 35 0 244 336 0 18 chr13 49536875 49536988 -70207910 + (TAG)n Simple_repeat Simple_repeat 2 112 0 518 264 39 0 chr13 49536997 49537126 -70207772 - MIR SINE MIR -31 231 98 312 286 20 0 chr13 49537187 49537285 -70207613 - MIR SINE MIR -46 216 117 398 245 10 10 chr13 49537548 49537646 -70207252 + MER96B DNA MER1_type? 2 99 -318 1010 134 34 0 chr13 49537662 49537811 -70207087 - FRAM SINE Alu -25 151 1 245 165 0 76 chr13 49537874 49537953 -70206945 - MER96B DNA MER1_type? -107 310 238 23 0 0 0 chr13 49538550 49538573 -70206325 + AT_rich Low_complexity Low_complexity 1 23 0 298 291 0 34 chr13 49539442 49539559 -70205339 + MIR SINE MIR 102 214 -48 208 244 202 48 chr13 49540252 49540420 -70204478 - L2 LINE L2 -1 3312 3119 225 0 0 0 chr13 49540990 49541015 -70203883 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 49541235 49541256 -70203642 + AT_rich Low_complexity Low_complexity 1 21 0 336 287 95 26 chr13 49541357 49541518 -70203380 + MIR SINE MIR 42 212 -50 907 254 76 16 chr13 49541913 49542216 -70202682 + L1MEd LINE L1 6 326 -5793 235 300 0 0 chr13 49542305 49542365 -70202533 - L2 LINE L2 -4 3309 3250 252 86 0 0 chr13 49543357 49543392 -70201506 + (A)n Simple_repeat Simple_repeat 1 35 0 287 303 66 41 chr13 49543663 49543785 -70201113 + MIR SINE MIR 23 147 -115 733 284 82 39 chr13 49544260 49544591 -70200307 - L2 LINE L2 0 3313 2969 292 204 0 0 chr13 49544597 49544651 -70200247 + MER94 DNA DNA 81 134 0 512 226 250 0 chr13 49544651 49544815 -70200083 - L2 LINE L2 -517 2797 2593 2115 76 40 43 chr13 49544845 49545148 -70199750 - AluY SINE Alu -8 303 2 188 321 0 0 chr13 49546106 49546162 -70198736 - MIR SINE MIR -157 105 50 465 222 74 43 chr13 49546210 49546372 -70198526 - L1ME4a LINE L1 -11 6110 5944 21 36 0 0 chr13 49546509 49546537 -70198361 + AT_rich Low_complexity Low_complexity 1 28 0 2850 77 3 35 chr13 49546557 49546933 -70197965 - THE1B LTR MaLR 0 364 1 193 313 15 0 chr13 49546968 49547035 -70197863 - MIR SINE MIR -10 252 185 582 250 46 32 chr13 49547115 49547331 -70197567 - L1ME4a LINE L1 -518 5603 5385 2481 75 0 0 chr13 49547407 49547702 -70197196 + AluY SINE Alu 1 295 -16 249 240 31 21 chr13 49547881 49547977 -70196921 + (TA)n Simple_repeat Simple_repeat 2 98 0 523 301 97 47 chr13 49547977 49548642 -70196256 - L1ME4a LINE L1 -157 6033 5327 2242 85 0 31 chr13 49548645 49548962 -70195936 - AluSq SINE Alu 0 308 1 37 86 0 0 chr13 49548972 49549065 -70195833 + AT_rich Low_complexity Low_complexity 1 93 0 382 299 108 19 chr13 49549250 49549564 -70195334 - L1ME4a LINE L1 -2144 4071 3730 7519 182 53 13 chr13 49549579 49549731 -70195167 - L1 LINE L1 -1332 4814 4670 3243 67 0 0 chr13 49549731 49550120 -70194778 + L1PA7 LINE L1 5764 6153 -1 7519 182 53 13 chr13 49550120 49551611 -70193287 - L1 LINE L1 -1476 4670 3105 1158 217 94 8 chr13 49551621 49552004 -70192894 - L1ME4a LINE L1 -1567 4579 4164 946 278 12 12 chr13 49552000 49552331 -70192567 - L1ME4a LINE L1 -2543 3672 3342 * 538 217 46 108 chr13 49552330 49552470 -70192428 - L1MDa LINE L1 -3895 2320 2238 * 1593 190 0 11 chr13 49552470 49552754 -70192144 - AluJo SINE Alu -17 295 15 538 217 46 108 chr13 49552754 49552853 -70192045 - L1MDa LINE L1 -3977 2238 2134 1944 176 0 0 chr13 49553389 49553691 -70191207 - AluJb SINE Alu -10 302 1 719 253 195 34 chr13 49553691 49554019 -70190879 - MLT1J2 LTR MaLR -64 386 6 1347 251 207 50 chr13 49555252 49556311 -70188587 - L2 LINE L2 -145 3168 1251 1312 267 75 3 chr13 49556344 49556733 -70188165 - L2 LINE L2 -464 2850 2434 691 254 119 13 chr13 49557875 49558111 -70186787 + MIR SINE MIR 2 262 0 194 174 22 0 chr13 49558202 49558248 -70186650 + (TA)n Simple_repeat Simple_repeat 2 48 0 981 250 5 5 chr13 49558306 49558494 -70186404 + MER5A DNA MER1_type 1 188 -1 1434 190 4 15 chr13 49558555 49558824 -70186074 + AluJo SINE Alu 11 276 -36 259 278 0 0 chr13 49558922 49558976 -70185922 - L2 LINE L2 -5 3267 3214 836 289 120 56 chr13 49559017 49560470 -70184428 - L1M4 LINE L1 -1324 4822 3464 2034 194 28 0 chr13 49560470 49560825 -70184073 + MLT1A1 LTR MaLR 1 365 0 836 289 120 56 chr13 49560825 49561028 -70183870 - L1M4 LINE L1 -2682 3464 3276 2022 161 0 3 chr13 49561028 49561339 -70183559 - AluJb SINE Alu -2 310 1 836 289 120 56 chr13 49561339 49561750 -70183148 - L1M4 LINE L1 -2870 3276 2631 24 0 0 0 chr13 49562835 49562859 -70182039 + AT_rich Low_complexity Low_complexity 1 24 0 717 118 45 0 chr13 49563548 49563658 -70181240 + AluJo SINE Alu 21 135 -177 3532 177 21 34 chr13 49563662 49564390 -70180508 - L1MA10 LINE L1 -38 6296 5579 457 176 28 142 chr13 49564390 49564566 -70180332 - LTR28 LTR ERV1 0 1020 865 483 238 46 33 chr13 49564631 49564839 -70180059 - LTR1 LTR ERV1 -565 220 70 319 309 58 29 chr13 49564843 49564982 -70179916 + MIR SINE MIR 86 228 -34 2764 162 17 53 chr13 49565649 49566229 -70178669 + MER89 LTR ERV1 1 559 0 425 235 35 0 chr13 49567223 49567308 -70177590 + L2 LINE L2 3147 3234 -38 1897 171 7 3 chr13 49567323 49567632 -70177266 + AluJo SINE Alu 1 310 -2 2318 159 17 26 chr13 49568443 49568872 -70176026 - MSTB LTR MaLR -1 411 1 485 284 56 0 chr13 49569142 49569304 -70175594 + LTR67 LTR ERVL 380 550 -7 246 305 0 49 chr13 49569782 49569864 -70175034 - MIR SINE MIR -124 138 61 602 238 121 29 chr13 49570977 49571183 -70173715 + MIR SINE MIR 26 250 -12 523 261 13 32 chr13 49571737 49571894 -70173004 + MER5A DNA MER1_type 36 189 0 422 320 155 0 chr13 49571903 49572109 -70172789 + MIR SINE MIR 19 256 -6 225 108 0 0 chr13 49572398 49572435 -70172463 + (CA)n Simple_repeat Simple_repeat 2 38 0 1323 239 122 19 chr13 49576592 49576960 -70167938 + MLT1H LTR MaLR 3 408 -141 763 323 18 4 chr13 49576970 49577199 -70167699 + MIR SINE MIR 8 239 -23 189 0 0 0 chr13 49577299 49577320 -70167578 + (A)n Simple_repeat Simple_repeat 1 21 0 804 299 30 15 chr13 49577326 49577590 -70167308 + L3 LINE CR1 1293 1560 -17 31 26 0 0 chr13 49577590 49577628 -70167270 + AT_rich Low_complexity Low_complexity 1 38 0 253 226 48 0 chr13 49577884 49577946 -70166952 - L1ME4a LINE L1 -202 5919 5855 490 294 77 49 chr13 49578175 49579004 -70165894 + L1ME4a LINE L1 4955 5809 -752 423 247 173 44 chr13 49579225 49579441 -70165457 - L1ME4a LINE L1 -157 5964 5777 4058 157 14 4 chr13 49579441 49580156 -70164742 + L1MD1 LINE L1 5520 6241 -1 423 247 173 44 chr13 49580156 49580303 -70164595 - L1ME4a LINE L1 -344 5777 5554 578 347 50 0 chr13 49580355 49580597 -70164301 - MIR SINE MIR -8 254 1 272 256 103 26 chr13 49582812 49583007 -70161891 + L1ME4a LINE L1 5898 6107 -14 25 0 0 0 chr13 49583007 49583032 -70161866 + AT_rich Low_complexity Low_complexity 1 25 0 247 246 8 29 chr13 49583211 49583339 -70161559 - MER5B DNA MER1_type 0 178 1 210 290 167 56 chr13 49586456 49586780 -70158118 + L2 LINE L2 2390 2749 -565 350 282 63 28 chr13 49587410 49587552 -70157346 - MLT1J2 LTR MaLR -41 409 263 314 288 12 0 chr13 49587590 49587670 -70157228 - MLT1I LTR MaLR -261 148 68 395 273 142 23 chr13 49587777 49587953 -70156945 + MIR SINE MIR 66 262 0 27 29 0 0 chr13 49588002 49588036 -70156862 + AT_rich Low_complexity Low_complexity 1 34 0 10495 21 2 7 chr13 49588224 49589470 -70155428 - L1PA4 LINE L1 -1384 4762 3524 7556 25 0 1 chr13 49589470 49590879 -70154019 + L1PA4 LINE L1 4766 6155 0 512 293 68 20 chr13 49591063 49591312 -70153586 + MIR SINE MIR 2 262 0 30 27 0 0 chr13 49592207 49592244 -70152654 + AT_rich Low_complexity Low_complexity 1 37 0 2199 82 14 0 chr13 49592317 49592620 -70152278 - AluSq SINE Alu 0 307 1 189 0 0 0 chr13 49592677 49592698 -70152200 + (TG)n Simple_repeat Simple_repeat 1 21 0 307 299 104 0 chr13 49592823 49592970 -70151928 + MIR3 SINE MIR 2 159 -60 288 0 0 0 chr13 49593115 49593147 -70151751 + (CA)n Simple_repeat Simple_repeat 2 33 0 2373 98 35 19 chr13 49593418 49593786 -70151112 - L1PA11 LINE L1 -1 6173 5800 2939 208 6 20 chr13 49594602 49595238 -70149660 + L1MC3 LINE L1 7070 7696 -89 1224 226 78 0 chr13 49595238 49595495 -70149403 + MSTD LTR MaLR 1 277 -119 426 98 0 0 chr13 49595495 49595556 -70149342 + MSTD LTR MaLR 397 457 0 438 137 42 11 chr13 49595558 49595653 -70149245 + L1MC2 LINE L1 6247 6344 0 243 304 61 43 chr13 49595680 49595795 -70149103 - L3 LINE CR1 -76 1501 1385 1893 135 0 64 chr13 49596571 49596898 -70148000 - AluSx SINE Alu -6 306 1 256 264 9 123 chr13 49597394 49597500 -70147398 - MIR SINE MIR -1 261 168 25 0 0 0 chr13 49598885 49598910 -70145988 + AT_rich Low_complexity Low_complexity 1 25 0 336 286 66 54 chr13 49599235 49599476 -70145422 + HAL1b LINE L1 331 574 -774 800 269 138 38 chr13 49599536 49600215 -70144683 + L1MC5 LINE L1 4487 5233 -913 474 260 55 17 chr13 49600283 49600464 -70144434 + L1MC5 LINE L1 5301 5488 -2320 1860 220 41 62 chr13 49600597 49601228 -70143670 + L1MC5 LINE L1 6614 7231 -730 271 205 60 13 chr13 49601228 49601379 -70143519 + (TA)n Simple_repeat Simple_repeat 2 159 0 227 171 40 40 chr13 49601372 49601448 -70143450 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 * 25 31 0 0 chr13 49602310 49602342 -70142556 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr13 49602990 49603025 -70141873 + AT_rich Low_complexity Low_complexity 1 35 0 204 281 0 18 chr13 49603173 49603230 -70141668 + CT-rich Low_complexity Low_complexity 6 61 0 1496 225 26 17 chr13 49604594 49604654 -70140244 - L1ME1 LINE L1 -90 6076 6018 3377 101 36 0 chr13 49604654 49605158 -70139740 - L1MA2 LINE L1 -1 6303 5782 1496 225 26 17 chr13 49605158 49605536 -70139362 - L1ME1 LINE L1 -148 6018 5718 2880 192 7 68 chr13 49605548 49606257 -70138641 - L1MA10 LINE L1 -2 6332 5667 1358 273 63 10 chr13 49606256 49606860 -70138038 - L1MCc LINE L1 -4285 2837 2202 * 3884 157 41 7 chr13 49606880 49607606 -70137292 - L1MC3 LINE L1 -8 7777 7027 1824 256 47 38 chr13 49607615 49608349 -70136549 - L1MCc LINE L1 -4897 1526 1260 2131 117 0 27 chr13 49608349 49608649 -70136249 - AluSx SINE Alu -13 299 8 1824 256 47 38 chr13 49608649 49609054 -70135844 - L1MCc LINE L1 -5163 1260 860 186 356 14 0 chr13 49609148 49609221 -70135677 - L2 LINE L2 -5 3267 3194 375 313 129 11 chr13 49609609 49609807 -70135091 + MIR SINE MIR 44 262 0 273 197 0 0 chr13 49610521 49610587 -70134311 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 418 324 45 47 chr13 49610655 49611202 -70133696 - L2 LINE L2 -100 3213 2624 823 345 92 37 chr13 49611222 49612085 -70132813 - L2 LINE L2 -1605 1709 800 260 237 99 69 chr13 49612086 49612217 -70132681 + LTR40a LTR ERVL 1 135 -384 2053 146 24 11 chr13 49612403 49612779 -70132119 - MSTB-int LTR MaLR -1270 381 1 2300 158 70 0 chr13 49612779 49613177 -70131721 - MSTB LTR MaLR 0 426 1 274 243 23 0 chr13 49613218 49613299 -70131599 + L1ME LINE L1 5462 5543 -578 261 299 6 45 chr13 49613365 49613542 -70131356 - L1ME LINE L1 -235 5886 5717 324 308 105 15 chr13 49614294 49614427 -70130471 - L1ME4a LINE L1 -198 5923 5779 41704 42 3 1 chr13 49614505 49620630 -70124268 - L1PA4 LINE L1 -3 6152 13 1607 186 20 14 chr13 49620713 49621009 -70123889 - AluJo SINE Alu -14 298 1 1451 255 107 27 chr13 49621808 49622368 -70122530 - L2 LINE L2 -749 2565 1961 1960 169 40 31 chr13 49622368 49622908 -70121990 + MLT2A2 LTR ERVL 3 554 0 577 209 68 14 chr13 49622911 49623059 -70121839 - L2 LINE L2 -1353 1961 1806 651 112 0 9 chr13 49623108 49623224 -70121674 + Charlie5 DNA MER1_type 2510 2624 0 1173 233 99 17 chr13 49623225 49623637 -70121261 - L2 LINE L2 -1517 1797 1352 192 125 0 0 chr13 49623847 49623879 -70121019 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 810 108 24 24 chr13 49625825 49625991 -70118907 + GA-rich Low_complexity Low_complexity 3 168 0 2618 127 19 0 chr13 49626735 49627160 -70117738 - L1MB2 LINE L1 -9 6162 5730 1208 223 42 71 chr13 49627304 49627784 -70117114 + LTR37B LTR ERV1 1 466 -2 186 208 0 0 chr13 49628413 49628461 -70116437 + (TG)n Simple_repeat Simple_repeat 1 48 0 408 295 43 68 chr13 49629618 49629852 -70115046 - MIR SINE MIR -12 250 23 4796 87 5 0 chr13 49630787 49631434 -70113464 - L1PA10 LINE L1 0 6168 5519 295 141 31 0 chr13 49633621 49633685 -70111213 + GA-rich Low_complexity Low_complexity 2 67 0 366 261 69 0 chr13 49635589 49635719 -70109179 - MIR SINE MIR -84 178 40 672 311 50 9 chr13 49636000 49636222 -70108676 - MIR SINE MIR -26 236 6 203 348 160 14 chr13 49636553 49636701 -70108197 - MIR SINE MIR -50 212 45 2424 84 0 0 chr13 49636703 49637014 -70107884 + AluY SINE Alu 1 311 0 203 245 20 0 chr13 49638298 49638347 -70106551 + G-rich Low_complexity Low_complexity 1 50 0 533 270 142 33 chr13 49639045 49639256 -70105642 + MIR SINE MIR 15 248 -14 956 207 18 6 chr13 49641217 49641442 -70103456 + L1ME1 LINE L1 5949 6332 -2 261 256 143 37 chr13 49642049 49642370 -70102528 + L1ME4a LINE L1 4541 4895 -1251 22 0 0 0 chr13 49642466 49642488 -70102410 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 49642848 49642873 -70102025 + AT_rich Low_complexity Low_complexity 1 25 0 647 254 127 51 chr13 49642968 49643519 -70101379 + L1ME4a LINE L1 5523 6115 -6 6397 226 28 14 chr13 49643744 49643958 -70100940 - L1MB7 LINE L1 -19 6807 6597 3047 206 72 9 chr13 49643958 49644699 -70100199 + LTR48 LTR ERV1 1 787 0 6397 226 28 14 chr13 49644699 49647092 -70097806 - L1MB7 LINE L1 -229 6597 4096 3222 195 61 26 chr13 49647096 49647695 -70097203 - L1MB7 LINE L1 -4536 2253 1613 369 0 0 0 chr13 49647695 49647736 -70097162 + (TG)n Simple_repeat Simple_repeat 2 42 0 3222 195 61 26 chr13 49647736 49648004 -70096894 - L1MB7 LINE L1 -5176 1613 1356 1308 323 41 28 chr13 49648168 49648782 -70096116 - L1MB7 LINE L1 -6159 630 9 273 270 45 27 chr13 49648925 49649036 -70095862 - L1M4c LINE L1 -4629 1755 1643 5764 221 60 38 chr13 49649067 49649310 -70095588 - L1M4c LINE L1 -4453 2372 2136 2179 131 3 0 chr13 49649310 49649615 -70095283 - AluSp SINE Alu -7 306 1 5764 221 60 38 chr13 49649615 49651576 -70093322 - L1M4c LINE L1 -4689 2136 2 224 328 31 0 chr13 49652043 49652107 -70092791 - L3b LINE CR1 -1 1582 1517 350 294 14 7 chr13 49652154 49652297 -70092601 + MER103 DNA DNA 20 163 -3 188 372 47 12 chr13 49652365 49652400 -70092498 - MIR SINE MIR -114 148 116 546 206 109 29 chr13 49652400 49652575 -70092323 + MER53 DNA DNA 1 189 0 188 372 47 12 chr13 49652575 49652625 -70092273 - MIR SINE MIR -146 116 60 2311 113 0 0 chr13 49652841 49653150 -70091748 + AluSg SINE Alu 1 309 -1 810 229 25 15 chr13 49653161 49653362 -70091536 - MIR SINE MIR 0 262 60 212 314 58 35 chr13 49653699 49653785 -70091113 + L2 LINE L2 3209 3296 -17 440 283 157 0 chr13 49654461 49654627 -70090271 - MIR SINE MIR 0 262 71 9819 25 0 0 chr13 49657276 49659232 -70085666 + L1PA4 LINE L1 4226 6181 0 1260 175 8 4 chr13 49659763 49660009 -70084889 + MLT1D LTR MaLR 1 247 -258 361 167 0 0 chr13 49660322 49660382 -70084516 + MER81 DNA DNA 54 113 -1 372 281 43 36 chr13 49661532 49661671 -70083227 + MIR3 SINE MIR 14 153 -55 217 341 77 40 chr13 49661935 49662208 -70082690 + L2 LINE L2 3023 3305 -8 194 282 128 0 chr13 49662802 49662880 -70082018 - MIR SINE MIR 0 262 175 192 276 110 76 chr13 49663344 49663489 -70081409 + L2 LINE L2 1764 1913 -1401 3709 130 58 1 chr13 49664786 49665837 -70079061 + Tigger2 DNA MER2_type 1 1142 -1576 8123 27 1 0 chr13 49665837 49666874 -70078024 - L1P LINE L1 -2344 3802 2765 7500 24 0 0 chr13 49666874 49667745 -70077153 + L1PA3 LINE L1 5284 6155 0 40 21 0 0 chr13 49667745 49667792 -70077106 + AT_rich Low_complexity Low_complexity 1 47 0 7875 120 38 25 chr13 49667818 49669155 -70075743 + Tigger2 DNA MER2_type 1134 2487 -231 415 118 0 24 chr13 49669165 49669250 -70075648 - Tigger2 DNA MER2_type -169 2549 2467 636 198 101 128 chr13 49669252 49669620 -70075278 + MLT1J LTR MaLR 154 511 0 185 80 0 0 chr13 49669688 49669713 -70075185 - L3b LINE CR1 -125 1458 1434 216 67 0 0 chr13 49670019 49670049 -70074849 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 243 345 21 99 chr13 49670073 49670215 -70074683 - L2 LINE L2 -15 3257 3127 339 311 134 0 chr13 49671596 49671715 -70073183 + MIR SINE MIR 9 143 -119 318 50 0 0 chr13 49671727 49671767 -70073131 + (TG)n Simple_repeat Simple_repeat 2 41 0 303 288 158 5 chr13 49671995 49672179 -70072719 - L1M4 LINE L1 -1113 5033 4822 363 157 0 0 chr13 49672580 49672650 -70072248 + (CA)n Simple_repeat Simple_repeat 1 70 0 180 176 0 0 chr13 49673118 49673152 -70071746 + (CCCCAG)n Simple_repeat Simple_repeat 1 34 0 520 269 146 56 chr13 49673450 49673882 -70071016 - L2 LINE L2 0 3313 2843 256 295 38 48 chr13 49674251 49674356 -70070542 - L2 LINE L2 -50 3222 3119 238 277 21 0 chr13 49674374 49674468 -70070430 - L1M4 LINE L1 -1712 4434 4339 840 187 7 0 chr13 49674468 49674618 -70070280 - MLT1B LTR MaLR 0 390 240 761 271 69 8 chr13 49674618 49674865 -70070033 - L2 LINE L2 -1360 1954 1693 4092 133 18 28 chr13 49674937 49675681 -70069217 - L1MA8 LINE L1 -4 6287 5552 2327 223 24 38 chr13 49675683 49676396 -70068502 - L1ME2 LINE L1 -34 6199 5497 * 2636 239 43 20 chr13 49676390 49677419 -70067479 - L1ME2 LINE L1 -2692 3523 2472 1462 295 83 30 chr13 49677404 49678530 -70066368 - L1ME2 LINE L1 -4632 1764 580 * 22 35 0 0 chr13 49678625 49678654 -70066244 + AT_rich Low_complexity Low_complexity 1 29 0 359 330 30 15 chr13 49678681 49678945 -70065953 - L1MEd LINE L1 -4971 1148 881 308 187 49 106 chr13 49678945 49679068 -70065830 - HAL1 LINE L1 -1490 1017 902 216 0 0 0 chr13 49679604 49679628 -70065270 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1070 194 35 112 chr13 49679905 49680281 -70064617 - MLT1A1 LTR MaLR 0 365 19 316 296 0 11 chr13 49680870 49680958 -70063940 - MIR SINE MIR -101 161 75 2281 82 0 30 chr13 49683024 49683328 -70061570 + AluY SINE Alu 1 295 -16 612 277 48 68 chr13 49683487 49683779 -70061119 + Charlie8 DNA MER1_type 1 286 -2131 1160 269 87 18 chr13 49683779 49684169 -70060729 + L2 LINE L2 2894 3310 -3 515 357 0 11 chr13 49685014 49685196 -70059702 + (TG)n Simple_repeat Simple_repeat 1 180 0 369 286 0 0 chr13 49685200 49685347 -70059551 + (TATATG)n Simple_repeat Simple_repeat 4 150 0 395 261 8 0 chr13 49685434 49685568 -70059330 + (TG)n Simple_repeat Simple_repeat 2 136 0 21 0 0 0 chr13 49685784 49685805 -70059093 + AT_rich Low_complexity Low_complexity 1 21 0 293 147 274 11 chr13 49685812 49685907 -70058991 - L2 LINE L2 -2 3311 3192 193 271 119 0 chr13 49687028 49687087 -70057811 - MIR SINE MIR -148 114 49 251 309 138 20 chr13 49687090 49687242 -70057656 - MIR3 SINE MIR -37 171 2 544 335 26 9 chr13 49687377 49687604 -70057294 - MIR SINE MIR -12 250 20 183 42 0 0 chr13 49688049 49688073 -70056825 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2263 103 0 17 chr13 49688611 49688913 -70055985 - AluSx SINE Alu -15 297 1 326 297 122 68 chr13 49689817 49690113 -70054785 + L2 LINE L2 2990 3301 -12 4384 157 4 11 chr13 49691931 49692682 -70052216 - L1MB5 LINE L1 -8 6166 5421 252 313 268 0 chr13 49692918 49693030 -70051868 + MER5A DNA MER1_type 48 189 0 746 220 36 12 chr13 49693149 49693317 -70051581 - MER5B DNA MER1_type 0 178 7 1877 158 14 0 chr13 49693834 49694119 -70050779 + AluJo SINE Alu 2 290 -22 202 167 0 0 chr13 49694265 49694301 -70050597 - L2 LINE L2 -1 3312 3277 965 232 45 80 chr13 49694352 49694814 -70050084 + MER20B DNA MER1_type 3 448 -335 488 104 0 13 chr13 49694810 49694887 -70050011 + MLT1B LTR MaLR 315 390 0 * 965 238 70 0 chr13 49695176 49695390 -70049508 - MIR SINE MIR 0 262 34 1519 186 18 87 chr13 49695669 49696061 -70048837 - MLT1A1 LTR MaLR 0 365 1 522 276 129 50 chr13 49699580 49699943 -70044955 + MER115 DNA AcHobo 302 693 0 292 163 0 0 chr13 49701147 49701196 -70043702 - L2 LINE L2 0 3313 3265 1001 219 78 14 chr13 49701445 49701640 -70043258 - MIR SINE MIR -5 257 45 501 257 9 9 chr13 49701640 49701753 -70043145 + MER81 DNA DNA 2 114 0 1001 219 78 14 chr13 49701753 49701776 -70043122 - MIR SINE MIR -217 45 25 468 257 235 0 chr13 49702580 49702763 -70042135 + MIR SINE MIR 21 246 -16 2702 125 184 71 chr13 49703039 49704137 -70040761 - Tigger3b DNA MER2_type -1 1231 7 237 233 86 52 chr13 49704264 49704380 -70040518 + MER46C DNA MER2_type 1 120 -218 292 267 11 0 chr13 49704398 49704488 -70040410 + MER46C DNA MER2_type 248 338 0 589 288 46 14 chr13 49704489 49704708 -70040190 - L1MC/D LINE L1 -2028 5780 5555 347 249 70 19 chr13 49704777 49704990 -70039908 - L1MC/D LINE L1 -749 5397 5174 802 276 15 0 chr13 49706745 49706948 -70037950 + MIR SINE MIR 50 255 -7 195 42 0 0 chr13 49709128 49709152 -70035746 + (T)n Simple_repeat Simple_repeat 1 24 0 409 271 19 19 chr13 49709986 49710093 -70034805 + MIR SINE MIR 36 142 -120 224 380 42 0 chr13 49711291 49711433 -70033465 - MIR SINE MIR -5 257 110 546 211 166 9 chr13 49712883 49713106 -70031792 + L1ME4a LINE L1 5861 6118 -3 2211 114 0 19 chr13 49713302 49713619 -70031279 - AluSx SINE Alu -1 311 1 5148 164 47 48 chr13 49713795 49714701 -70030197 - Ricksha_a DNA DNA -2078 1173 268 1963 163 0 16 chr13 49714701 49715008 -70029890 - AluJo SINE Alu -10 302 1 5148 164 47 48 chr13 49715008 49715276 -70029622 - Ricksha_a DNA DNA -2983 268 1 212 237 176 38 chr13 49715797 49715953 -70028945 + MIR SINE MIR 22 202 -60 2158 121 3 0 chr13 49716245 49716542 -70028356 + AluSc SINE Alu 1 298 -11 2329 111 0 0 chr13 49717172 49717470 -70027428 - AluSg SINE Alu -12 298 1 3862 133 24 13 chr13 49717850 49718481 -70026417 + L1PA16 LINE L1 5520 6157 -9 564 130 0 0 chr13 49718482 49718597 -70026301 + (TA)n Simple_repeat Simple_repeat 1 115 0 22 56 0 0 chr13 49718695 49718731 -70026167 + AT_rich Low_complexity Low_complexity 1 36 0 255 276 82 66 chr13 49718795 49718991 -70025907 - L1ME LINE L1 -248 5873 5675 486 182 161 14 chr13 49721857 49722000 -70022898 - MIR SINE MIR -36 226 63 496 299 55 20 chr13 49722363 49722564 -70022334 + MIR SINE MIR 31 238 -24 217 270 63 0 chr13 49723217 49723280 -70021618 - L2 LINE L2 -8 3305 3239 314 332 71 65 chr13 49723624 49723965 -70020933 + L2 LINE L2 2925 3293 -20 1032 174 64 4 chr13 49724416 49724680 -70020218 + MER33 DNA MER1_type 45 324 0 494 315 71 34 chr13 49724816 49725054 -70019844 - MIR SINE MIR 0 262 16 188 315 31 63 chr13 49725337 49725464 -70019434 + MIR SINE MIR 137 259 -3 535 217 20 35 chr13 49725746 49725944 -70018954 - L1MC5 LINE L1 -164 7797 7603 1574 178 10 29 chr13 49725963 49726272 -70018626 + AluJo SINE Alu 1 303 -9 1897 172 0 3 chr13 49726402 49726693 -70018205 + AluJo SINE Alu 1 290 -22 194 355 26 13 chr13 49727383 49727535 -70017363 - L2 LINE L2 -1315 1999 1846 594 232 55 24 chr13 49727609 49727773 -70017125 + MIR SINE MIR 43 211 -51 546 237 180 34 chr13 49729484 49729834 -70015064 + HAL1b LINE L1 208 608 -740 325 306 47 43 chr13 49730033 49730286 -70014612 + HAL1b LINE L1 709 2359 -148 1606 204 40 3 chr13 49730666 49731018 -70013880 + MLT1A1 LTR MaLR 1 365 0 309 300 142 34 chr13 49731036 49731289 -70013609 + L1 LINE L1 2367 2678 -3468 410 0 20 0 chr13 49731289 49731339 -70013559 + (CA)n Simple_repeat Simple_repeat 2 52 0 309 300 142 34 chr13 49731339 49731472 -70013426 + L1 LINE L1 2678 2795 -3351 520 264 6 13 chr13 49733488 49733647 -70011251 - MIR SINE MIR 0 262 105 640 217 0 13 chr13 49733649 49733801 -70011097 + L1MC5 LINE L1 6696 6845 -1116 510 231 9 0 chr13 49733803 49733911 -70010987 - MER81 DNA DNA 0 114 6 2133 183 96 92 chr13 49733913 49734170 -70010728 + L1MC5 LINE L1 6852 7106 -855 1510 46 0 0 chr13 49734170 49734369 -70010529 - AluY SINE Alu 0 304 106 2133 183 96 92 chr13 49734369 49735158 -70009740 + L1MC5 LINE L1 7106 7883 -78 238 326 11 21 chr13 49735202 49735297 -70009601 - MIR SINE MIR -148 114 21 4597 150 40 3 chr13 49735508 49736824 -70008074 - L1PB3 LINE L1 -146 6008 4641 2842 169 249 1 chr13 49736832 49737544 -70007354 + L1PB3 LINE L1 3733 4620 -1526 518 228 16 16 chr13 49737554 49737681 -70007217 - MLT1F1 LTR MaLR -53 514 388 236 262 8 82 chr13 49737671 49737793 -70007105 - MLT1E LTR MaLR -327 240 128 * 213 39 0 0 chr13 49737797 49737823 -70007075 + (T)n Simple_repeat Simple_repeat 1 26 0 330 234 101 8 chr13 49737828 49737939 -70006959 - MLT1E LTR MaLR -450 92 1 3551 39 83 0 chr13 49738683 49738997 -70005901 + L1MC1 LINE L1 5508 5776 -557 3551 144 54 2 chr13 49738997 49739623 -70005275 + L1MC1 LINE L1 5670 6328 -5 3551 39 83 0 chr13 49739623 49739705 -70005193 + L1MC1 LINE L1 5776 6328 -5 180 97 0 0 chr13 49739824 49739855 -70005043 + (TA)n Simple_repeat Simple_repeat 1 31 0 5434 56 1 0 chr13 49739855 49740532 -70004366 - L1PA5 LINE L1 -15 6139 5462 1614 172 20 16 chr13 49740593 49740896 -70004002 - AluJo SINE Alu -8 304 1 1003 142 35 104 chr13 49742276 49742564 -70002334 + ORSL DNA AcHobo 6 273 -2 2208 131 0 0 chr13 49743261 49743567 -70001331 + AluSx SINE Alu 1 306 -6 324 0 0 0 chr13 49744791 49744827 -70000071 + (TG)n Simple_repeat Simple_repeat 2 37 0 706 181 9 0 chr13 49744831 49744947 -69999951 - FLAM_A SINE Alu -16 117 1 3698 124 0 6 chr13 49745587 49746117 -69998781 - MER1A DNA MER1_type 0 527 1 233 333 40 0 chr13 49746735 49746810 -69998088 - MIR3 SINE MIR -27 181 104 570 191 67 49 chr13 49747301 49747514 -69997384 + LTR45B LTR ERV1 296 489 0 277 361 108 0 chr13 49748156 49748286 -69996612 - MIR3 SINE MIR -63 145 2 429 206 130 101 chr13 49748501 49749067 -69995831 - L1MC5 LINE L1 -336 7625 6855 2525 54 0 3 chr13 49749067 49749365 -69995533 - AluY SINE Alu -14 297 1 429 206 130 101 chr13 49749365 49749585 -69995313 - L1MC5 LINE L1 -1106 6855 6643 371 162 29 0 chr13 49749910 49749978 -69994920 - AluJ/FRAM SINE Alu -2 300 231 21 0 0 0 chr13 49750137 49750158 -69994740 + AT_rich Low_complexity Low_complexity 1 21 0 284 310 103 35 chr13 49751630 49751804 -69993094 - MIR3 SINE MIR -5 203 18 4075 134 18 5 chr13 49752323 49752994 -69991904 - L1PA16 LINE L1 -2 6164 5485 459 0 0 0 chr13 49753066 49753117 -69991781 + (TG)n Simple_repeat Simple_repeat 1 51 0 197 341 34 57 chr13 49753694 49753782 -69991116 + L2 LINE L2 3137 3222 -50 935 280 69 24 chr13 49753793 49754168 -69990730 + L2 LINE L2 1452 1843 -1471 1656 225 34 5 chr13 49754224 49754610 -69990288 + MLT1C LTR MaLR 71 467 0 1630 275 96 21 chr13 49754625 49755055 -69989843 + L2 LINE L2 1889 2378 -936 2421 146 59 0 chr13 49755055 49755459 -69989439 - MSTC LTR MaLR 0 428 1 1630 275 96 21 chr13 49755459 49755635 -69989263 + L2 LINE L2 2378 2540 -774 443 262 133 38 chr13 49755671 49755881 -69989017 - L2 LINE L2 -4 3309 3080 876 297 122 34 chr13 49755895 49756609 -69988289 + L2 LINE L2 2530 3313 0 341 324 29 24 chr13 49757349 49757519 -69987379 - L1MC4a LINE L1 -1894 5914 5744 360 310 26 65 chr13 49757794 49757949 -69986949 + MIR3 SINE MIR 14 162 -46 1790 80 0 0 chr13 49758454 49758692 -69986206 - L1PA8 LINE L1 -4 6168 5931 222 365 26 0 chr13 49758867 49758982 -69985916 + MER5B DNA MER1_type 61 178 0 204 273 0 0 chr13 49758995 49759039 -69985859 - L2 LINE L2 -535 2779 2736 2888 173 12 4 chr13 49759046 49759607 -69985291 - L1MB3 LINE L1 -2 6181 5616 2025 144 39 33 chr13 49759825 49760187 -69984711 + THE1B LTR MaLR 1 364 0 1386 115 23 0 chr13 49760192 49760409 -69984489 - L1MA4A LINE L1 -15 6288 6067 336 241 0 71 chr13 49760450 49760562 -69984336 - L2 LINE L2 -617 2697 2594 3263 130 4 54 chr13 49760583 49761246 -69983652 - MER41B LTR ERV1 0 554 6 265 222 16 16 chr13 49761263 49761326 -69983572 - L2 LINE L2 -751 2563 2501 297 311 121 37 chr13 49765844 49766078 -69978820 + MIR SINE MIR 5 257 -5 215 191 172 89 chr13 49766657 49766799 -69978099 + MIR SINE MIR 21 171 -76 673 216 0 0 chr13 49769564 49769698 -69975200 + L1PB4 LINE L1 6023 6156 0 257 341 38 8 chr13 49769973 49770105 -69974793 + MIR3 SINE MIR 54 189 -19 394 231 242 10 chr13 49770324 49770354 -69974544 - L1MC4a LINE L1 -320 5801 5779 1349 144 35 5 chr13 49770354 49770556 -69974342 - MER6B DNA MER2_type -2 208 1 394 231 242 10 chr13 49770556 49770718 -69974180 - L1MC4a LINE L1 -342 5779 5600 3111 201 48 36 chr13 49770728 49770873 -69974025 - L1ME1 LINE L1 -5 6161 6019 1692 188 40 77 chr13 49770873 49771325 -69973573 - MER63B DNA MER1_type -1 435 1 2830 0 3 3 chr13 49771333 49771640 -69973258 - AluYa5 SINE Alu -4 307 1 3111 201 48 36 chr13 49771640 49772207 -69972691 - L1ME1 LINE L1 -153 6013 5431 575 271 92 70 chr13 49772263 49772894 -69972004 - L1MDa LINE L1 -4615 1925 1281 73 57 0 0 chr13 49773015 49773137 -69971761 + AT_rich Low_complexity Low_complexity 1 122 0 2037 150 3 3 chr13 49773386 49773680 -69971218 - AluSx SINE Alu -17 295 2 256 245 0 0 chr13 49774206 49774259 -69970639 - MER5B DNA MER1_type -122 56 4 343 273 45 0 chr13 49775003 49775113 -69969785 - MIR SINE MIR 0 262 148 356 322 8 25 chr13 49775237 49775358 -69969540 + MIR SINE MIR 20 138 -124 272 297 95 54 chr13 49776272 49776441 -69968457 - MER5A DNA MER1_type -3 186 1 425 287 19 0 chr13 49776880 49776988 -69967910 + ERVL LTR ERVL 4734 4843 -921 2135 142 44 0 chr13 49777000 49777338 -69967560 + THE1B LTR MaLR 2 354 -10 439 319 26 53 chr13 49777419 49777527 -69967371 + ERVL LTR ERVL 5015 5124 -640 2732 134 3 0 chr13 49777527 49777901 -69966997 + THE1C LTR MaLR 1 375 0 439 319 26 53 chr13 49777901 49778171 -69966727 + ERVL LTR ERVL 5124 5383 -381 863 276 68 52 chr13 49778312 49778739 -69966159 + LTR16A LTR ERVL 17 450 0 337 332 106 42 chr13 49779934 49780151 -69964747 - MIR SINE MIR -11 251 21 330 167 0 0 chr13 49780992 49781052 -69963846 + (TA)n Simple_repeat Simple_repeat 2 61 0 2129 154 21 68 chr13 49781095 49781518 -69963380 + MSTB1 LTR MaLR 8 410 -22 3573 113 16 19 chr13 49781518 49782030 -69962868 - MER1A DNA MER1_type 0 529 20 349 190 76 38 chr13 49781991 49782070 -69962828 + Charlie3 DNA MER1_type 6 87 -2623 * 191 253 213 67 chr13 49782310 49782460 -69962438 - MIR3 SINE MIR -7 201 30 1638 267 68 45 chr13 49784403 49785339 -69959559 + L2 LINE L2 2353 3311 -2 1456 169 60 18 chr13 49785377 49785661 -69959237 - AluJo SINE Alu -9 303 8 391 273 99 84 chr13 49785672 49786005 -69958893 - MLT1J LTR MaLR -50 461 124 1920 121 21 38 chr13 49786760 49787100 -69957798 - L1MA4A LINE L1 0 6303 5970 604 308 174 20 chr13 49787695 49788052 -69956846 + L3 LINE CR1 1154 1565 -12 201 227 227 45 chr13 49788359 49788469 -69956429 - MER5A DNA MER1_type -48 141 12 184 277 44 109 chr13 49788650 49788787 -69956111 + L2 LINE L2 3164 3291 -22 358 300 18 9 chr13 49789999 49790109 -69954789 - MIR SINE MIR -129 133 23 235 304 72 56 chr13 49791483 49791608 -69953290 - MER5A DNA MER1_type -2 187 61 * 476 260 23 23 chr13 49791513 49791658 -69953240 + MER5A DNA MER1_type 34 189 0 267 300 106 38 chr13 49791838 49791923 -69952975 + MER5B DNA MER1_type 2 80 -98 348 24 0 0 chr13 49791923 49791964 -69952934 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 378 0 0 0 chr13 49791963 49792005 -69952893 + (CA)n Simple_repeat Simple_repeat 1 42 0 267 300 106 38 chr13 49791964 49792079 -69952819 + MER5B DNA MER1_type 80 172 -6 394 225 167 25 chr13 49792704 49792877 -69952021 + L1MC4 LINE L1 7860 7995 0 269 268 28 28 chr13 49793647 49793780 -69951118 - MLT1J1 LTR MaLR -4 442 358 * 489 305 77 31 chr13 49793779 49794038 -69950860 - MLT1J LTR MaLR -176 335 65 186 389 22 17 chr13 49794894 49795041 -69949857 + MIR3 SINE MIR 12 156 -79 189 107 0 0 chr13 49795464 49795492 -69949406 + (TAAAAA)n Simple_repeat Simple_repeat 1 28 0 862 248 47 23 chr13 49796612 49796911 -69947987 - L1MC5 LINE L1 -48 7913 7608 2961 132 79 2 chr13 49798381 49798851 -69946047 - L1PA16 LINE L1 -4 6162 5657 716 151 277 18 chr13 49799983 49800149 -69944749 - MER3 DNA MER1_type 0 209 1 211 299 11 46 chr13 49800181 49800268 -69944630 + MIR3 SINE MIR 110 193 -15 293 403 45 0 chr13 49800363 49800497 -69944401 + MIR3 SINE MIR 34 173 -35 294 282 43 26 chr13 49801079 49801196 -69943702 - L2 LINE L2 -4 3309 3191 356 182 16 107 chr13 49801283 49801404 -69943494 + MER103 DNA DNA 8 117 -49 399 344 52 10 chr13 49801825 49802017 -69942881 + MIR SINE MIR 28 227 -35 1398 157 76 30 chr13 49802303 49802565 -69942333 - AluJo SINE Alu -4 308 35 234 370 24 8 chr13 49803317 49803444 -69941454 + MIR SINE MIR 46 174 -88 1368 258 86 23 chr13 49803453 49804056 -69940842 + L2 LINE L2 2682 3313 0 454 241 12 82 chr13 49804259 49804429 -69940469 + L1MC4 LINE L1 7098 7255 -787 1364 158 116 44 chr13 49805601 49806089 -69938809 + MER34B LTR ERV1 2 565 0 240 245 0 0 chr13 49806736 49806789 -69938109 + MER89 LTR ERV1 11 63 -496 3209 126 59 29 chr13 49806818 49807375 -69937523 - MER4B LTR ERV1 -36 574 1 1342 227 78 21 chr13 49807378 49807713 -69937185 + MER89 LTR ERV1 197 550 -9 288 222 74 37 chr13 49807746 49807854 -69937044 - MARNA DNA Mariner -36 550 439 889 198 111 133 chr13 49807941 49808453 -69936445 - LTR28 LTR ERV1 -452 1303 1 240 314 93 0 chr13 49810048 49810134 -69934764 + L2 LINE L2 3119 3212 -60 379 205 0 18 chr13 49810230 49810342 -69934556 + (TA)n Simple_repeat Simple_repeat 2 111 0 629 247 91 38 chr13 49810598 49810861 -69934037 - L1MC4 LINE L1 -188 7854 7578 641 134 21 10 chr13 49810875 49810972 -69933926 - FLAM_C SINE Alu -18 125 28 355 236 19 9 chr13 49810994 49811100 -69933798 - L1MC4 LINE L1 -473 7569 7463 428 320 121 10 chr13 49811379 49811585 -69933313 - MIR SINE MIR 0 262 34 30 0 0 0 chr13 49812449 49812479 -69932419 + AT_rich Low_complexity Low_complexity 1 30 0 460 315 172 31 chr13 49812912 49813359 -69931539 - MLT1H LTR MaLR 0 549 40 1750 152 30 20 chr13 49813551 49813854 -69931044 + AluJb SINE Alu 1 306 -6 3098 222 85 25 chr13 49813863 49815392 -69929506 + L1ME1 LINE L1 4550 6334 0 238 266 210 16 chr13 49816318 49816442 -69928456 - MIR3 SINE MIR -51 157 10 237 33 0 0 chr13 49816498 49816528 -69928370 + (CA)n Simple_repeat Simple_repeat 2 31 0 2351 93 3 3 chr13 49816615 49816926 -69927972 - AluSq SINE Alu -2 311 1 550 258 0 0 chr13 49817037 49817157 -69927741 + MIR SINE MIR 112 231 -31 511 27 27 14 chr13 49817623 49817696 -69927202 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1897 164 0 25 chr13 49817698 49818015 -69926883 - AluJo SINE Alu -1 311 3 2022 117 78 0 chr13 49818559 49818842 -69926056 + AluSx SINE Alu 1 305 -7 930 351 44 22 chr13 49819108 49819657 -69925241 - HERV16 LTR ERVL -735 5029 4469 327 284 37 28 chr13 49819819 49819928 -69924970 - HERV16 LTR ERVL -4886 110 1 1333 278 24 49 chr13 49819928 49820395 -69924503 - LTR16C LTR ERVL 0 491 37 655 223 44 58 chr13 49820446 49820652 -69924246 - MIR SINE MIR -19 243 41 393 143 14 0 chr13 49821247 49821317 -69923581 - Charlie8 DNA MER1_type -2142 275 205 531 161 9 89 chr13 49821320 49821432 -69923466 - Tigger7 DNA MER2_type 0 2487 2385 * 1364 195 73 0 chr13 49821427 49821673 -69923225 - Tigger7 DNA MER2_type -2220 267 4 330 286 64 29 chr13 49821676 49821816 -69923082 - Charlie8 DNA MER1_type -2227 190 46 548 324 79 41 chr13 49821827 49822142 -69922756 + L3 LINE CR1 1247 1573 -4 318 285 58 36 chr13 49823141 49823278 -69921620 - MIR SINE MIR -6 256 117 264 324 0 14 chr13 49824751 49824825 -69920073 - L2 LINE L2 0 3272 3200 2546 214 58 25 chr13 49826267 49826873 -69918025 - MLT1E2 LTR MaLR 0 626 1 695 268 18 14 chr13 49827573 49827793 -69917105 - L1ME LINE L1 -369 5752 5532 237 108 0 0 chr13 49828005 49828042 -69916856 + (T)n Simple_repeat Simple_repeat 1 37 0 200 204 23 0 chr13 49828796 49828840 -69916058 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 1149 280 69 83 chr13 49829402 49829969 -69914929 - MER77 LTR ERV1 -6 599 41 1827 134 3 77 chr13 49830058 49830431 -69914467 - MER4A LTR ERV1 0 664 261 755 71 0 10 chr13 49830431 49830530 -69914368 - MER4A LTR ERV1 -566 98 1 474 292 16 25 chr13 49830841 49831084 -69913814 + L1MDa LINE L1 1857 2108 -4443 2643 157 5 0 chr13 49831181 49831582 -69913316 - MER57A LTR ERV1 0 403 1 210 37 0 0 chr13 49832490 49832517 -69912381 + (TG)n Simple_repeat Simple_repeat 2 28 0 208 213 347 0 chr13 49833249 49833324 -69911574 - MIR SINE MIR -31 231 131 337 289 173 5 chr13 49833689 49833774 -69911124 + L1MC4 LINE L1 7584 7653 -389 234 0 0 0 chr13 49833774 49833800 -69911098 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 337 289 173 5 chr13 49833800 49833922 -69910976 + L1MC4 LINE L1 7653 7826 -216 258 246 97 9 chr13 49833933 49834047 -69910851 + L1MC4 LINE L1 7918 8041 -1 305 191 0 71 chr13 49834083 49834209 -69910689 + T-rich Low_complexity Low_complexity 5 121 0 24 0 0 0 chr13 49834978 49835002 -69909896 + AT_rich Low_complexity Low_complexity 1 24 0 2243 144 5 25 chr13 49835056 49835424 -69909474 + MLT1B LTR MaLR 30 390 0 978 262 87 23 chr13 49887270 49887657 -69857241 - L2 LINE L2 -227 3086 2682 234 370 24 8 chr13 49887666 49887793 -69857105 - MIR SINE MIR -88 174 46 1398 157 76 30 chr13 49888546 49888808 -69856090 + AluJo SINE Alu 35 308 -4 363 332 52 16 chr13 49889094 49889287 -69855611 - MIR SINE MIR -35 227 28 356 182 16 107 chr13 49889708 49889829 -69855069 - MER103 DNA DNA -49 117 8 294 282 43 26 chr13 49889916 49890033 -69854865 + L2 LINE L2 3191 3309 -4 293 403 45 0 chr13 49890615 49890749 -69854149 - MIR3 SINE MIR -35 173 34 211 299 11 46 chr13 49890844 49890931 -69853967 - MIR3 SINE MIR -15 193 110 716 151 277 18 chr13 49890963 49891129 -69853769 + MER3 DNA MER1_type 1 209 0 2961 132 79 2 chr13 49892261 49892731 -69852167 + L1PA16 LINE L1 5657 6162 -4 826 222 58 12 chr13 49894200 49894443 -69850455 + L1MC5 LINE L1 7608 7861 -100 189 107 0 0 chr13 49895623 49895651 -69849247 + (TTTTTA)n Simple_repeat Simple_repeat 1 28 0 489 319 56 27 chr13 49897076 49897467 -69847431 + MLT1J LTR MaLR 65 507 -4 394 225 167 25 chr13 49898242 49898415 -69846483 - L1MD3 LINE L1 0 8042 7860 272 283 119 44 chr13 49899041 49899114 -69845784 - MER5B DNA MER1_type -6 172 106 450 0 0 0 chr13 49899114 49899164 -69845734 + (TG)n Simple_repeat Simple_repeat 1 50 0 312 27 0 0 chr13 49899163 49899200 -69845698 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 272 283 119 44 chr13 49899164 49899285 -69845613 - MER5B DNA MER1_type -72 106 2 476 260 23 23 chr13 49899465 49899610 -69845288 - MER5A DNA MER1_type 0 189 34 221 312 72 56 chr13 49899515 49899640 -69845258 + MER5A DNA MER1_type 61 187 -2 * 358 300 18 9 chr13 49901014 49901124 -69843774 + MIR SINE MIR 23 133 -129 184 277 44 109 chr13 49902336 49902473 -69842425 - L2 LINE L2 -22 3291 3164 201 227 227 45 chr13 49902654 49902764 -69842134 + MER5A DNA MER1_type 12 141 -48 382 327 115 0 chr13 49903071 49903236 -69841662 - L3 LINE CR1 -12 1565 1382 300 242 61 0 chr13 49903500 49903566 -69841332 + L2 LINE L2 3244 3313 0 454 241 12 82 chr13 49903770 49903940 -69840958 + L1MC4 LINE L1 7098 7255 -787 1359 158 116 42 chr13 49905110 49905597 -69839301 + MER34B LTR ERV1 2 565 0 235 245 0 0 chr13 49906243 49906296 -69838602 + MER89 LTR ERV1 11 63 -496 3232 124 59 29 chr13 49906325 49906882 -69838016 - MER4B LTR ERV1 -36 574 1 1342 227 78 21 chr13 49906885 49907220 -69837678 + MER89 LTR ERV1 197 550 -9 288 222 74 37 chr13 49907253 49907361 -69837537 - MARNA DNA Mariner -36 550 439 889 200 111 133 chr13 49907448 49907960 -69836938 - LTR28 LTR ERV1 -452 1303 1 245 310 81 0 chr13 49909555 49909642 -69835256 + L2 LINE L2 3119 3212 -60 253 215 32 43 chr13 49909714 49909807 -69835091 + L1MC4 LINE L1 6612 6703 -1339 240 250 0 0 chr13 49909808 49909856 -69835042 + (TA)n Simple_repeat Simple_repeat 2 49 0 629 247 91 38 chr13 49910112 49910375 -69834523 - L1MC4 LINE L1 -188 7854 7578 641 134 21 10 chr13 49910389 49910486 -69834412 - FLAM_C SINE Alu -18 125 28 355 236 19 9 chr13 49910508 49910614 -69834284 - L1MC4 LINE L1 -473 7569 7463 428 320 121 10 chr13 49910893 49911099 -69833799 - MIR SINE MIR 0 262 34 30 0 0 0 chr13 49911963 49911993 -69832905 + AT_rich Low_complexity Low_complexity 1 30 0 445 318 172 31 chr13 49912426 49912873 -69832025 - MLT1H LTR MaLR 0 549 40 1549 169 34 0 chr13 49913065 49913331 -69831567 + AluJb SINE Alu 1 275 -37 332 359 107 10 chr13 49913739 49913965 -69830933 + L2 LINE L2 2037 2300 -1014 2687 16 3 3 chr13 49913965 49914269 -69830629 + AluY SINE Alu 1 304 -7 332 359 107 10 chr13 49914269 49914340 -69830558 + L2 LINE L2 2300 2363 -951 326 190 63 0 chr13 49914738 49914817 -69830081 - L1M4 LINE L1 -924 5222 5139 477 322 12 31 chr13 49914821 49915079 -69829819 - L1MEc LINE L1 -4578 1683 1431 * 36946 70 12 6 chr13 49915076 49921189 -69823709 - L1PA6 LINE L1 0 6154 11 1135 289 69 50 chr13 49921202 49922102 -69822796 - L1MEc LINE L1 -4819 1442 526 349 283 0 72 chr13 49922215 49922381 -69822517 - L1MEc LINE L1 -5539 531 378 863 276 68 52 chr13 49923406 49923833 -69821065 - LTR16A LTR ERVL 0 450 17 446 319 26 53 chr13 49923974 49924244 -69820654 - ERVL LTR ERVL -381 5383 5124 2732 134 3 0 chr13 49924244 49924618 -69820280 - THE1C LTR MaLR 0 375 1 446 319 26 53 chr13 49924618 49924726 -69820172 - ERVL LTR ERVL -640 5124 5015 2122 145 44 0 chr13 49924807 49925145 -69819753 - THE1B LTR MaLR -10 354 2 425 287 19 0 chr13 49925157 49925265 -69819633 - ERVL LTR ERVL -921 4843 4734 272 297 95 54 chr13 49925704 49925873 -69819025 + MER5A DNA MER1_type 1 186 -3 180 0 0 0 chr13 49926682 49926702 -69818196 + (TG)n Simple_repeat Simple_repeat 1 20 0 356 322 8 25 chr13 49926789 49926910 -69817988 - MIR SINE MIR -124 138 20 343 273 45 0 chr13 49927034 49927144 -69817754 + MIR SINE MIR 148 262 0 256 245 0 0 chr13 49927887 49927940 -69816958 + MER5B DNA MER1_type 4 56 -122 2037 150 3 3 chr13 49928466 49928760 -69816138 + AluSx SINE Alu 2 295 -17 34 55 0 0 chr13 49929009 49929064 -69815834 + AT_rich Low_complexity Low_complexity 1 55 0 419 250 139 82 chr13 49929147 49929473 -69815425 + L1ME1 LINE L1 953 1258 -4957 3031 217 89 28 chr13 49929604 49931069 -69813829 + L1ME1 LINE L1 4687 6403 0 238 266 210 16 chr13 49932001 49932125 -69812773 - MIR3 SINE MIR -51 157 10 237 33 0 0 chr13 49932181 49932211 -69812687 + (CA)n Simple_repeat Simple_repeat 2 31 0 2351 93 3 3 chr13 49932298 49932609 -69812289 - AluSq SINE Alu -2 311 1 550 258 0 0 chr13 49932720 49932840 -69812058 + MIR SINE MIR 112 231 -31 511 27 27 14 chr13 49933306 49933379 -69811519 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1886 165 0 25 chr13 49933381 49933697 -69811201 - AluJo SINE Alu -1 311 4 2022 117 78 0 chr13 49934242 49934525 -69810373 + AluSx SINE Alu 1 305 -7 949 352 44 20 chr13 49934791 49935339 -69809559 - HERV16 LTR ERVL -735 5029 4469 325 273 36 36 chr13 49935502 49935612 -69809286 - HERV16 LTR ERVL -4886 110 1 1224 287 24 51 chr13 49935614 49936081 -69808817 - LTR16C LTR ERVL -1 490 37 655 223 44 58 chr13 49936132 49936338 -69808560 - MIR SINE MIR -19 243 41 393 143 14 0 chr13 49936933 49937003 -69807895 - Charlie8 DNA MER1_type -2153 264 194 531 161 9 89 chr13 49937006 49937118 -69807780 - Tigger7 DNA MER2_type 0 2487 2385 * 1364 195 73 0 chr13 49937113 49937359 -69807539 - Tigger7 DNA MER2_type -466 267 4 526 326 76 41 chr13 49937513 49937829 -69807069 + L3 LINE CR1 1247 1573 -4 228 35 0 0 chr13 49939211 49939240 -69805658 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 326 62 62 chr13 49940361 49940490 -69804408 + L2 LINE L2 3142 3270 -2 702 309 88 29 chr13 49941426 49941801 -69803097 + MLT1I LTR MaLR 11 407 -2 5229 73 10 7 chr13 49942148 49942876 -69802022 - L1P LINE L1 -888 5258 4529 278 269 88 83 chr13 49943932 49944125 -69800773 + MLT1J LTR MaLR 268 461 -50 1456 169 60 18 chr13 49944136 49944420 -69800478 + AluJo SINE Alu 8 303 -9 1641 263 67 46 chr13 49944458 49945382 -69799516 - L2 LINE L2 -2 3311 2368 191 253 213 67 chr13 49947335 49947485 -69797413 + MIR3 SINE MIR 30 201 -7 349 190 76 38 chr13 49947725 49947804 -69797094 - Charlie3 DNA MER1_type -2623 87 6 * 1892 122 11 11 chr13 49947765 49948043 -69796855 + MER1A DNA MER1_type 20 297 -232 376 145 16 16 chr13 49948328 49948390 -69796508 - AluS SINE Alu -233 70 9 198 169 28 42 chr13 49948617 49948688 -69796210 + GA-rich Low_complexity Low_complexity 2 71 0 227 294 9 28 chr13 49948772 49948881 -69796017 + GA-rich Low_complexity Low_complexity 1 107 0 273 289 26 0 chr13 49948933 49949009 -69795889 - L2 LINE L2 -9 3263 3186 252 173 0 49 chr13 49949680 49949761 -69795137 + CT-rich Low_complexity Low_complexity 2 78 0 2005 127 0 14 chr13 49950010 49950320 -69794578 + AluSx SINE Alu 9 312 0 1770 112 22 30 chr13 49951071 49951338 -69793560 + MER1A DNA MER1_type 265 529 0 * 2129 154 21 68 chr13 49951338 49951761 -69793137 - MSTB1 LTR MaLR -22 410 8 384 152 0 0 chr13 49951804 49951870 -69793028 + (TA)n Simple_repeat Simple_repeat 2 67 0 337 332 106 42 chr13 49952710 49952927 -69791971 + MIR SINE MIR 21 251 -11 1920 121 21 38 chr13 49954372 49954712 -69790186 - L1MA4A LINE L1 0 6303 5970 270 0 0 0 chr13 49956271 49956301 -69788597 + (CA)n Simple_repeat Simple_repeat 2 31 0 1685 209 19 29 chr13 49956301 49956678 -69788220 - MLT1A2 LTR MaLR -1 373 1 28 0 0 0 chr13 49956679 49956707 -69788191 + AT_rich Low_complexity Low_complexity 1 28 0 315 254 41 53 chr13 49956720 49956889 -69788009 + L1ME4a LINE L1 5935 6101 -20 1358 86 6 6 chr13 49957567 49957742 -69787156 + AluSq SINE Alu 1 175 -138 180 268 0 0 chr13 49958678 49958749 -69786149 + (TG)n Simple_repeat Simple_repeat 1 71 0 264 324 0 14 chr13 49959899 49959973 -69784925 - L2 LINE L2 0 3272 3200 2546 214 58 25 chr13 49961415 49962021 -69782877 - MLT1E2 LTR MaLR 0 626 1 374 288 16 53 chr13 49963135 49963321 -69781577 + MIR SINE MIR 27 206 -56 526 232 168 7 chr13 49964588 49964743 -69780155 + MER5A DNA MER1_type 9 188 -1 22 0 0 0 chr13 49966047 49966069 -69778829 + AT_rich Low_complexity Low_complexity 1 22 0 311 235 92 31 chr13 49966782 49966880 -69778018 - MLT1H LTR MaLR -353 196 93 222 266 64 55 chr13 49967221 49967330 -69777568 - L3b LINE CR1 -202 1381 1272 2043 163 41 27 chr13 49967529 49968073 -69776825 + MLT2A2 LTR ERVL 1 554 0 213 152 0 0 chr13 49968580 49968613 -69776285 - L2 LINE L2 -1520 1794 1762 572 288 11 5 chr13 49968676 49968860 -69776038 + MLT1H LTR MaLR 12 196 -353 1146 180 25 0 chr13 49969381 49969581 -69775317 - L1MD2 LINE L1 -7 6352 6148 331 281 83 31 chr13 49969590 49969782 -69775116 - L1ME LINE L1 -304 5817 5616 270 0 0 0 chr13 49970024 49970054 -69774844 + (CA)n Simple_repeat Simple_repeat 2 31 0 1725 209 16 29 chr13 49970054 49970432 -69774466 - MLT1A2 LTR MaLR -1 373 1 28 0 0 0 chr13 49970433 49970461 -69774437 + AT_rich Low_complexity Low_complexity 1 28 0 346 263 27 43 chr13 49970474 49970660 -69774238 + L1ME4a LINE L1 5935 6117 -4 702 309 88 29 chr13 49971263 49971638 -69773260 - MLT1I LTR MaLR -2 407 11 216 326 62 62 chr13 49972573 49972702 -69772196 - L2 LINE L2 -2 3270 3142 228 35 0 0 chr13 49973823 49973852 -69771046 + (TG)n Simple_repeat Simple_repeat 1 29 0 538 219 24 71 chr13 49974627 49974796 -69770102 + MER103 DNA DNA 4 164 -2 279 205 13 64 chr13 49975165 49975243 -69769655 - Tigger2 DNA MER2_type -10 2708 2635 5669 127 3 11 chr13 49975270 49976142 -69768756 - L1PA15 LINE L1 -2 6163 5299 2249 97 77 6 chr13 49976143 49976493 -69768405 - Tigger2 DNA MER2_type -64 2654 2280 407 194 0 0 chr13 49976491 49976558 -69768340 - Tigger2 DNA MER2_type -2649 69 3 * 1738 121 103 60 chr13 49977095 49977617 -69767281 + MER51A LTR ERV1 1 634 0 2131 114 10 3 chr13 49978578 49978876 -69766022 + AluSg SINE Alu 1 300 -10 191 359 13 0 chr13 49979028 49979106 -69765792 - MIR SINE MIR 0 262 184 716 224 6 38 chr13 49979369 49979552 -69765346 + MER5B DNA MER1_type 2 178 0 391 309 123 12 chr13 49980040 49980202 -69764696 - MIR SINE MIR -49 213 34 852 223 13 0 chr13 49980236 49980393 -69764505 + MER45A DNA AcHobo 6 164 -14 281 313 31 49 chr13 49980851 49981130 -69763768 + L1ME LINE L1 947 1201 -4879 5688 170 34 7 chr13 49981148 49982770 -69762128 + L1PA13 LINE L1 2160 6097 0 1333 267 135 42 chr13 49982746 49983589 -69761309 + L1M4 LINE L1 2865 3786 -2294 * 4950 153 25 29 chr13 49983591 49984461 -69760437 + Tigger1 DNA MER2_type 1 867 -1551 1263 166 36 5 chr13 49984555 49984778 -69760120 - MER97b DNA MER1_type? -816 237 8 485 308 117 71 chr13 49985102 49985211 -69759687 + L2 LINE L2 2773 2876 -396 486 33 0 0 chr13 49985211 49985271 -69759627 + (CA)n Simple_repeat Simple_repeat 2 61 0 485 308 117 71 chr13 49985271 49985637 -69759261 + L2 LINE L2 2876 3268 -4 340 214 12 12 chr13 49986760 49986844 -69758054 - MER117 DNA MER1_type -110 87 4 328 321 10 62 chr13 49987580 49987773 -69757125 + MER5A DNA MER1_type 7 189 0 822 209 117 0 chr13 49988933 49989129 -69755769 - MER58A DNA MER1_type 0 224 6 252 167 0 0 chr13 49989379 49989427 -69755471 + GA-rich Low_complexity Low_complexity 2 49 0 228 100 0 0 chr13 49989429 49989469 -69755429 + (CAGG)n Simple_repeat Simple_repeat 2 41 0 643 267 111 9 chr13 49989645 49989862 -69755036 + MIR SINE MIR 12 250 -12 271 236 97 0 chr13 49990021 49990093 -69754805 - L2 LINE L2 -5 3308 3230 1028 183 114 26 chr13 49990138 49990411 -69754487 + LTR50 LTR ERVL 1 297 -498 831 238 137 4 chr13 49990451 49990699 -69754199 + LTR50 LTR ERVL 510 790 -5 4980 165 47 3 chr13 49990840 49991821 -69753077 + L1MB3 LINE L1 5152 6182 -1 338 293 179 14 chr13 49992289 49992429 -69752469 + MIR SINE MIR 79 241 -21 229 347 40 0 chr13 49993073 49993148 -69751750 + MIR SINE MIR 53 130 -132 414 0 0 0 chr13 49993583 49993629 -69751269 + (TG)n Simple_repeat Simple_repeat 1 46 0 185 301 159 40 chr13 49993725 49993901 -69750997 - MIR3 SINE MIR -6 202 6 207 0 0 0 chr13 49994489 49994512 -69750386 + (T)n Simple_repeat Simple_repeat 1 23 0 228 281 0 0 chr13 49994943 49995000 -69749898 + GA-rich Low_complexity Low_complexity 1 57 0 207 139 0 0 chr13 49995000 49995036 -69749862 + (GAA)n Simple_repeat Simple_repeat 3 38 0 11242 185 16 14 chr13 49995177 49996930 -69747968 - L1PA16 LINE L1 -33 6133 4386 221 0 35 0 chr13 49996930 49996959 -69747939 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 11242 185 16 14 chr13 49996959 49998312 -69746586 - L1PA16 LINE L1 -1780 4386 3041 2364 85 0 0 chr13 49998312 49998606 -69746292 - AluY SINE Alu -17 294 1 11242 185 16 14 chr13 49998606 49998699 -69746199 - L1PA16 LINE L1 -3125 3041 2950 4558 121 65 70 chr13 49998699 50000125 -69744773 - pTR5 LTR ERV1 0 2438 66 13120 168 95 11 chr13 50000125 50003505 -69741393 - L1PBa LINE L1 -3192 3670 6 924 165 0 0 chr13 50004289 50004422 -69740476 - FLAM_C SINE Alu 0 133 1 1456 208 74 104 chr13 50004635 50005221 -69739677 - MLT1F1 LTR MaLR 0 567 1 334 386 0 0 chr13 50005533 50005665 -69739233 + MIR3 SINE MIR 77 208 0 1946 129 4 4 chr13 50006632 50006912 -69737986 - AluJo SINE Alu -32 280 1 284 281 0 0 chr13 50007042 50007106 -69737792 - MLT1I LTR MaLR -3 406 343 228 317 146 8 chr13 50007847 50007970 -69736928 - MLT1I LTR MaLR -189 220 81 2478 68 3 10 chr13 50008160 50008471 -69736427 + AluSg1 SINE Alu 1 309 0 441 364 61 23 chr13 50009449 50009710 -69735188 - L2 LINE L2 -491 2823 2553 401 335 43 6 chr13 50010014 50010178 -69734720 + MIR SINE MIR 56 225 -37 593 226 83 29 chr13 50010296 50010484 -69734414 + MIR SINE MIR 3 201 -61 2034 123 0 14 chr13 50011113 50011423 -69733475 - AluSx SINE Alu 0 312 9 198 169 28 42 chr13 50011650 50011721 -69733177 + GA-rich Low_complexity Low_complexity 2 71 0 229 239 18 37 chr13 50011805 50011914 -69732984 + GA-rich Low_complexity Low_complexity 1 107 0 248 303 26 0 chr13 50011966 50012042 -69732856 - L2 LINE L2 -9 3263 3186 182 204 0 37 chr13 50012713 50012767 -69732131 + CT-rich Low_complexity Low_complexity 3 54 0 218 385 62 0 chr13 50012919 50013049 -69731849 - MER5A DNA MER1_type -3 186 49 500 309 111 13 chr13 50013196 50013422 -69731476 + L2 LINE L2 2037 2300 -1014 2722 16 0 3 chr13 50013422 50013726 -69731172 + AluY SINE Alu 1 303 -8 500 309 111 13 chr13 50013726 50013797 -69731101 + L2 LINE L2 2300 2363 -951 326 190 63 0 chr13 50014195 50014274 -69730624 - L1M4 LINE L1 -924 5222 5139 477 322 12 31 chr13 50014278 50014536 -69730362 - L1MEc LINE L1 -4578 1683 1431 * 28374 68 9 5 chr13 50014533 50020647 -69724251 - L1PA6 LINE L1 0 6154 11 852 294 66 47 chr13 50020660 50021560 -69723338 - L1MEc LINE L1 -4819 1442 526 297 283 0 72 chr13 50021673 50021839 -69723059 - L1MEc LINE L1 -5539 531 378 895 311 118 39 chr13 50022083 50022887 -69722011 - L1MEd LINE L1 -5035 1084 217 249 324 29 0 chr13 50022940 50023076 -69721822 - L1MEd LINE L1 -5978 141 2 186 43 0 0 chr13 50023153 50023176 -69721722 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 516 303 13 43 chr13 50023188 50023419 -69721479 + MER102a DNA MER1_type 107 330 0 3194 78 48 2 chr13 50023431 50023864 -69721034 + MLT2A2 LTR ERVL 1 453 0 1646 183 136 18 chr13 50024263 50024646 -69720252 - MSTA LTR MaLR 0 428 1 196 227 23 0 chr13 50025316 50025360 -69719538 - L3b LINE CR1 -10 1573 1529 286 173 53 13 chr13 50026040 50026115 -69718783 + MER103 DNA DNA 43 120 -46 512 224 17 0 chr13 50027383 50027499 -69717399 - Charlie1 DNA MER1_type 0 2761 2644 925 203 45 0 chr13 50027538 50027760 -69717138 - Charlie1 DNA MER1_type -2529 232 1 195 336 154 59 chr13 50028322 50028542 -69716356 + L2 LINE L2 3014 3254 -18 559 306 54 61 chr13 50029111 50029556 -69715342 + LTR16C LTR ERVL 1 442 -49 185 320 33 41 chr13 50030877 50030999 -69713899 + MIR SINE MIR 18 138 -70 252 189 0 19 chr13 50032700 50032753 -69712145 + L2 LINE L2 3262 3313 0 395 227 27 36 chr13 50032819 50032929 -69711969 + MIR SINE MIR 10 118 -144 579 245 67 70 chr13 50033020 50033363 -69711535 - LTR37B LTR ERV1 -120 348 7 305 200 0 67 chr13 50033376 50033451 -69711447 + MIR SINE MIR 172 241 -21 191 252 58 117 chr13 50035479 50035582 -69709316 + MIR SINE MIR 28 124 -138 380 291 36 0 chr13 50035937 50036047 -69708851 - MIR3 SINE MIR -2 206 93 2291 102 30 0 chr13 50036178 50036481 -69708417 - AluSx SINE Alu 0 312 1 216 0 0 0 chr13 50036546 50036570 -69708328 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 182 309 15 0 chr13 50036956 50037024 -69707874 - MIR SINE MIR -88 174 106 209 211 0 0 chr13 50037095 50037133 -69707765 - MER91 DNA MER1_type -27 163 126 2259 186 122 20 chr13 50037857 50038563 -69706335 - MER69 DNA AcHobo 0 2526 1749 725 233 72 27 chr13 50038566 50038789 -69706109 - MER69 DNA AcHobo -2141 385 153 248 287 70 17 chr13 50038964 50039079 -69705819 + L2 LINE L2 3005 3125 -188 5161 147 2 0 chr13 50039116 50040328 -69704570 - L1PA16 LINE L1 0 6166 4927 251 238 107 0 chr13 50040405 50040489 -69704409 + L2 LINE L2 3218 3310 -3 391 292 102 22 chr13 50040647 50040784 -69704114 - MIR3 SINE MIR -60 148 1 290 242 220 8 chr13 50040924 50041056 -69703842 - MIR SINE MIR -55 207 48 39 60 0 0 chr13 50041151 50041218 -69703680 + AT_rich Low_complexity Low_complexity 1 67 0 233 333 11 0 chr13 50041728 50041821 -69703077 - L2 LINE L2 -456 2858 2765 2972 180 9 4 chr13 50042324 50042869 -69702029 - MER44D DNA MER2_type -1 604 2 963 255 83 9 chr13 50042911 50043237 -69701661 + MLT1J2 LTR MaLR 101 450 0 195 300 67 0 chr13 50044160 50044250 -69700648 - L2 LINE L2 0 3272 3177 253 258 8 137 chr13 50046221 50046345 -69698553 - L2 LINE L2 -173 3099 2992 225 0 0 0 chr13 50048376 50048401 -69696497 + (A)n Simple_repeat Simple_repeat 1 25 0 243 267 20 20 chr13 50048875 50048976 -69695922 - L1MC4a LINE L1 -1633 6175 6075 802 275 41 34 chr13 50049036 50049599 -69695299 - L1ME4a LINE L1 -142 5979 5410 1071 160 35 113 chr13 50049719 50050063 -69694835 + MER33 DNA MER1_type 7 323 -1 238 289 101 0 chr13 50050211 50050360 -69694538 - L1P LINE L1 -1105 5041 4878 501 281 61 64 chr13 50050382 50050674 -69694224 - L1ME4a LINE L1 -1408 4738 4447 2081 126 0 40 chr13 50050674 50050999 -69693899 - AluSx SINE Alu 0 312 1 501 281 61 64 chr13 50050999 50051724 -69693174 - L1ME4a LINE L1 -1699 4447 3728 769 253 74 0 chr13 50052054 50052256 -69692642 + MER58A DNA MER1_type 7 223 -1 948 99 0 0 chr13 50053069 50053190 -69691708 + AluSg/x SINE Alu 156 276 -36 440 65 0 0 chr13 50053190 50053252 -69691646 + Alu SINE Alu 242 303 -8 25 0 0 0 chr13 50053357 50053382 -69691516 + AT_rich Low_complexity Low_complexity 1 25 0 280 348 54 9 chr13 50054738 50054850 -69690048 + L2 LINE L2 3156 3272 0 180 268 0 0 chr13 50057273 50057344 -69687554 + (TG)n Simple_repeat Simple_repeat 1 71 0 2186 125 0 3 chr13 50058042 50058345 -69686553 + AluSx SINE Alu 3 304 -8 331 268 0 0 chr13 50058949 50059046 -69685852 + (TA)n Simple_repeat Simple_repeat 1 97 0 694 200 0 0 chr13 50059242 50059362 -69685536 - 5S rRNA rRNA -1 120 1 345 100 0 0 chr13 50060552 50060602 -69684296 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 290 139 0 0 chr13 50060879 50060922 -69683976 + L1MD2 LINE L1 6068 6110 -249 252 0 0 0 chr13 50060934 50060962 -69683936 + (CA)n Simple_repeat Simple_repeat 2 29 0 246 32 0 0 chr13 50061012 50061043 -69683855 + (TG)n Simple_repeat Simple_repeat 2 32 0 374 244 47 0 chr13 50061085 50061220 -69683678 + L1MD2 LINE L1 6196 7806 -32 375 194 185 9 chr13 50064735 50064843 -69680055 - L2 LINE L2 -5 3308 3182 723 220 112 70 chr13 50064849 50065320 -69679578 - MLT1D LTR MaLR 0 467 1 4366 277 142 23 chr13 50065322 50066984 -69677914 - L2 LINE L2 -129 3184 1221 1655 168 16 6 chr13 50066984 50067305 -69677593 - MER33 DNA MER1_type 0 324 1 4366 277 142 23 chr13 50067305 50067645 -69677253 - L2 LINE L2 -2092 1221 923 263 59 0 0 chr13 50068210 50068244 -69676654 + U2 snRNA snRNA 3 36 -152 270 217 0 0 chr13 50068281 50068350 -69676548 + (CA)n Simple_repeat Simple_repeat 2 70 0 985 298 146 21 chr13 50069822 50070342 -69674556 + MLT1K LTR MaLR 4 588 0 291 187 132 22 chr13 50070686 50070777 -69674121 + L1MEd LINE L1 54 154 -5965 312 346 73 42 chr13 50070797 50071207 -69673691 + L1MEd LINE L1 389 811 -5308 626 134 30 67 chr13 50071215 50071349 -69673549 - MER1B DNA MER1_type 0 339 211 190 286 0 0 chr13 50071668 50071717 -69673181 + L2 LINE L2 3265 3313 0 1873 44 0 0 chr13 50072122 50072350 -69672548 - L1PA5 LINE L1 -7 6147 5920 1283 187 0 0 chr13 50072350 50072554 -69672344 - MER1B DNA MER1_type -168 211 5 485 277 58 33 chr13 50072646 50072975 -69671923 + L1MEd LINE L1 919 1255 -4864 255 249 147 40 chr13 50073020 50073197 -69671701 + HAL1 LINE L1 1437 1632 -875 1919 147 0 26 chr13 50073652 50073958 -69670940 + AluJo SINE Alu 1 298 -14 299 250 10 0 chr13 50074135 50074239 -69670659 + L1MEd LINE L1 2203 2307 -3822 316 289 134 24 chr13 50074471 50074882 -69670016 + L1MEd LINE L1 2653 3108 -3021 1207 82 155 43 chr13 50075238 50075445 -69669453 - MER30 DNA MER1_type 0 230 1 234 71 119 0 chr13 50077007 50077049 -69667849 + MLT1K LTR MaLR 54 100 -405 323 272 33 11 chr13 50077195 50077287 -69667611 + MIR SINE MIR 119 212 -50 246 62 0 0 chr13 50077365 50077397 -69667501 + (GGGGA)n Simple_repeat Simple_repeat 3 34 0 194 152 0 43 chr13 50077399 50077445 -69667453 + A-rich Low_complexity Low_complexity 2 45 0 226 321 12 12 chr13 50077990 50078071 -69666827 - MIR SINE MIR -71 137 57 6699 111 8 1 chr13 50078078 50079141 -69665757 - L1PA7 LINE L1 -2331 3815 2746 11129 77 16 8 chr13 50079142 50081447 -69663451 + L1PA7 LINE L1 3828 6149 -5 299 207 45 0 chr13 50082573 50082648 -69662250 + GA-rich Low_complexity Low_complexity 4 87 -32 2493 84 0 0 chr13 50082648 50082957 -69661941 + AluY SINE Alu 1 309 -2 299 207 45 0 chr13 50082957 50082992 -69661906 + GA-rich Low_complexity Low_complexity 87 119 0 1245 205 62 62 chr13 50084928 50085299 -69659599 + MLT1B LTR MaLR 1 371 -19 245 319 17 16 chr13 50085427 50085542 -69659356 + MIR SINE MIR 23 140 -68 466 275 50 25 chr13 50086112 50086272 -69658626 - MIR SINE MIR -78 184 21 338 175 57 153 chr13 50087779 50087839 -69657059 + MER104 DNA Tc2 2 66 -1832 917 188 29 0 chr13 50087839 50088009 -69656889 + FAM SINE Alu 1 175 0 338 175 57 153 chr13 50088009 50088125 -69656773 + MER104 DNA Tc2 66 161 -19 986 164 16 11 chr13 50088200 50088389 -69656509 + MER20 DNA MER1_type 28 217 -2 208 292 146 21 chr13 50088640 50088736 -69656162 - MIR3 SINE MIR -90 118 11 195 270 83 64 chr13 50088979 50089183 -69655715 + L3b LINE CR1 1176 1383 -200 300 296 90 98 chr13 50089457 50089856 -69655042 + L1M2 LINE L1 748 1143 -5706 21 71 0 0 chr13 50091380 50091422 -69653476 + AT_rich Low_complexity Low_complexity 1 42 0 257 223 96 57 chr13 50092197 50092354 -69652544 + MLT1K LTR MaLR 84 246 -342 1290 270 71 26 chr13 50092482 50092949 -69651949 - MLT1L LTR MaLR -33 582 95 523 254 17 94 chr13 50093172 50093460 -69651438 + MLT1K LTR MaLR 311 576 -12 31 20 0 20 chr13 50095244 50095266 -69649632 + AT_rich Low_complexity Low_complexity 1 22 -26 2096 149 0 19 chr13 50095266 50095582 -69649316 - AluSx SINE Alu 0 312 3 31 20 0 20 chr13 50095582 50095608 -69649290 + AT_rich Low_complexity Low_complexity 22 48 0 38 39 0 0 chr13 50096186 50096238 -69648660 + AT_rich Low_complexity Low_complexity 1 52 0 257 50 0 25 chr13 50096772 50096812 -69648086 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2021 105 0 3 chr13 50096812 50097117 -69647781 + L1MA4 LINE L1 5479 5782 -518 813 116 0 0 chr13 50097117 50097229 -69647669 + AluSg/x SINE Alu 174 285 -25 2384 164 34 47 chr13 50097229 50097764 -69647134 + L1MA4 LINE L1 5766 6293 -7 317 288 52 26 chr13 50097873 50098026 -69646872 + L1MC/D LINE L1 5122 5278 -868 245 200 19 43 chr13 50098101 50098224 -69646674 + L1MC/D LINE L1 5374 5426 -736 1792 235 82 40 chr13 50098514 50099268 -69645630 - L1MC4 LINE L1 -29 8013 7228 224 162 297 0 chr13 50099270 50099344 -69645554 - L2 LINE L2 -528 2786 2691 225 0 0 0 chr13 50099464 50099489 -69645409 + (CA)n Simple_repeat Simple_repeat 2 26 0 337 298 65 16 chr13 50099492 50099616 -69645282 + MIR SINE MIR 32 161 -101 2413 121 53 22 chr13 50100167 50100582 -69644316 + MSTA LTR MaLR 1 428 0 259 317 20 27 chr13 50101052 50101345 -69643553 + L1MC5 LINE L1 7504 7794 -167 233 375 0 0 chr13 50101345 50101425 -69643473 + GA-rich Low_complexity Low_complexity 6 85 0 226 221 12 35 chr13 50101426 50101512 -69643386 + L1MC4 LINE L1 7918 8001 -41 286 234 75 11 chr13 50101776 50101870 -69643028 + MIR SINE MIR 163 262 0 22721 164 25 16 chr13 50102104 50108308 -69636590 + L1PA11 LINE L1 1 7608 -4 4827 178 14 10 chr13 50108540 50110338 -69634560 + L1MB2 LINE L1 4316 6122 -49 2316 104 0 0 chr13 50110338 50110637 -69634261 + AluSx SINE Alu 1 299 -13 4827 178 14 10 chr13 50110637 50110672 -69634226 + L1MB2 LINE L1 6122 6155 -16 180 0 0 0 chr13 50110675 50110695 -69634203 + (TAA)n Simple_repeat Simple_repeat 2 21 0 897 155 48 170 chr13 50111544 50111722 -69633176 + MER8 DNA MER2_type 1 136 -103 2305 88 17 0 chr13 50111722 50112016 -69632882 + AluSx SINE Alu 1 299 -13 897 155 48 170 chr13 50112016 50112108 -69632790 + MER8 DNA MER2_type 136 238 -1 319 273 85 18 chr13 50112200 50112282 -69632616 + L1ME4a LINE L1 5752 5827 -294 3342 170 8 15 chr13 50112282 50112889 -69632009 + MER6A DNA MER2_type 1 603 -2 319 273 85 18 chr13 50112889 50112971 -69631927 + L1ME4a LINE L1 5827 5927 -194 442 299 58 56 chr13 50113047 50113458 -69631440 + L1ME2 LINE L1 918 1329 -5618 763 106 23 8 chr13 50113531 50113663 -69631235 + T-rich Low_complexity Low_complexity 4 137 0 527 164 0 18 chr13 50113653 50113763 -69631135 + CT-rich Low_complexity Low_complexity 1 108 0 * 560 257 113 24 chr13 50114054 50114548 -69630350 + L1ME2 LINE L1 1331 1792 -5063 2681 219 26 32 chr13 50114553 50115420 -69629478 + L1ME2 LINE L1 4660 5521 -1436 1874 213 106 39 chr13 50115456 50116363 -69628535 + L1ME2 LINE L1 5765 6728 -247 624 178 172 44 chr13 50116405 50116585 -69628313 + MLT1E3 LTR MaLR 56 258 -368 804 191 74 57 chr13 50116627 50116794 -69628104 + MLT1E3 LTR MaLR 391 566 -58 2326 71 0 0 chr13 50116794 50117118 -69627780 + AluY SINE Alu 1 324 0 804 191 74 57 chr13 50117118 50117179 -69627719 + MLT1E3 LTR MaLR 566 624 0 543 265 61 10 chr13 50117179 50117375 -69627523 + L1ME2 LINE L1 6718 6923 -52 2035 244 34 19 chr13 50117401 50118023 -69626875 + L1ME2 LINE L1 5437 6067 -97 283 193 0 0 chr13 50118023 50118080 -69626818 - MER31A LTR ERV1 -9 476 420 2296 100 3 3 chr13 50118411 50118720 -69626178 + AluSx SINE Alu 1 309 -3 25 0 0 0 chr13 50118720 50118745 -69626153 + AT_rich Low_complexity Low_complexity 1 25 0 302 254 92 34 chr13 50119182 50119436 -69625462 + L1ME4a LINE L1 5329 5600 -521 734 250 53 26 chr13 50119527 50119831 -69625067 + L1ME4a LINE L1 5615 5926 -195 2893 136 6 24 chr13 50119967 50120461 -69624437 - MER31A LTR ERV1 0 485 1 1533 196 60 69 chr13 50120665 50121202 -69623696 - L1ME1 LINE L1 -5 6161 5630 512 130 0 122 chr13 50121247 50121362 -69623536 + MER46A DNA MER2_type 1 101 -135 949 241 17 23 chr13 50121482 50121864 -69623034 - MLT2B1 LTR ERVL -43 477 1 3134 202 16 31 chr13 50121864 50122479 -69622419 - L1ME1 LINE L1 -532 5634 5047 2444 38 0 56 chr13 50122479 50122799 -69622099 - AluY SINE Alu -9 302 1 3134 202 16 31 chr13 50122799 50123326 -69621572 - L1ME1 LINE L1 -1119 5047 4513 231 36 0 0 chr13 50124487 50124515 -69620383 + (T)n Simple_repeat Simple_repeat 1 28 0 341 240 192 0 chr13 50124886 50124990 -69619908 - L2 LINE L2 -3 3310 3187 1159 186 57 0 chr13 50125681 50125891 -69619007 - MER58A DNA MER1_type -1 223 2 1712 78 0 0 chr13 50125891 50126096 -69618802 + AluSc SINE Alu 80 284 -25 25 0 0 0 chr13 50126113 50126138 -69618760 + AT_rich Low_complexity Low_complexity 1 25 0 1627 94 31 0 chr13 50126447 50126670 -69618228 - MER30 DNA MER1_type 0 230 1 366 322 101 66 chr13 50126690 50127007 -69617891 - L2 LINE L2 0 3272 2945 219 316 99 67 chr13 50127211 50127464 -69617434 - L2 LINE L2 -601 2713 2453 1914 149 33 27 chr13 50127495 50127830 -69617068 + MER1B DNA MER1_type 1 337 -2 2686 129 18 0 chr13 50127934 50128377 -69616521 - L1MB3 LINE L1 -15 6168 5718 376 316 81 0 chr13 50128719 50128893 -69616005 - L1MEc LINE L1 -4585 1811 1624 2047 153 0 3 chr13 50129027 50129327 -69615571 + AluSx SINE Alu 1 299 -13 416 271 65 57 chr13 50129355 50129602 -69615296 + L1ME3A LINE L1 4993 5241 -905 598 319 60 23 chr13 50129619 50130190 -69614708 + L1ME3A LINE L1 5267 5858 -312 819 216 20 106 chr13 50130238 50130323 -69614575 - LTR16A LTR ERVL -12 438 347 1584 212 6 3 chr13 50130323 50130634 -69614264 + AluJb SINE Alu 1 312 0 819 216 20 106 chr13 50130634 50130802 -69614096 - LTR16A LTR ERVL -103 347 207 350 296 86 18 chr13 50130845 50131034 -69613864 - L1M4 LINE L1 -905 5241 5037 320 247 0 59 chr13 50131907 50131992 -69612906 - L2 LINE L2 -9 3304 3225 4571 160 44 15 chr13 50131995 50133001 -69611897 + L1MC2 LINE L1 5156 6335 -9 228 314 126 16 chr13 50133001 50133192 -69611706 - L2 LINE L2 -82 3231 3020 739 238 71 58 chr13 50133302 50133879 -69611019 + L1MC5 LINE L1 7260 7758 -203 22 56 0 0 chr13 50134031 50134067 -69610831 + AT_rich Low_complexity Low_complexity 1 36 0 320 235 24 12 chr13 50134154 50134239 -69610659 + L1MC5 LINE L1 7832 7917 -44 206 295 85 31 chr13 50135627 50135756 -69609142 - L2 LINE L2 -2583 731 596 287 242 11 22 chr13 50135845 50135936 -69608962 + MLT1K LTR MaLR 499 588 0 21 0 0 0 chr13 50136006 50136027 -69608871 + AT_rich Low_complexity Low_complexity 1 21 0 1131 153 94 30 chr13 50136121 50136324 -69608574 + AluJb SINE Alu 87 302 -10 214 350 15 85 chr13 50136502 50136702 -69608196 - MIR3 SINE MIR -21 187 2 764 240 27 0 chr13 50137532 50137715 -69607183 - MER63A DNA MER1_type -14 196 9 205 170 0 106 chr13 50138979 50139026 -69605872 - L2 LINE L2 -3153 161 120 996 33 0 0 chr13 50139188 50139308 -69605590 - L1PA3 LINE L1 0 6155 6036 3404 133 25 7 chr13 50140515 50141079 -69603819 + MER50 LTR ERV1 138 711 -23 219 328 180 8 chr13 50142019 50142147 -69602751 - MIR3 SINE MIR -43 165 16 6851 100 15 5 chr13 50142687 50143831 -69601067 + L1MA2 LINE L1 5143 6304 0 23 0 0 0 chr13 50143831 50143854 -69601044 + AT_rich Low_complexity Low_complexity 1 23 0 216 282 47 12 chr13 50144697 50144782 -69600116 - L3b LINE CR1 -201 1382 1295 24 0 0 0 chr13 50144996 50145020 -69599878 + AT_rich Low_complexity Low_complexity 1 24 0 249 219 35 44 chr13 50145129 50145243 -69599655 + (CATATA)n Simple_repeat Simple_repeat 4 116 0 2040 164 20 0 chr13 50145357 50145698 -69599200 - MER7A DNA MER2_type 0 346 1 248 315 27 46 chr13 50146367 50146586 -69598312 - MER112 DNA MER1_type -34 226 12 1475 269 44 29 chr13 50146756 50147232 -69597666 + L2 LINE L2 2815 3297 -16 2861 7 0 0 chr13 50147325 50147635 -69597263 - AluYa5 SINE Alu -1 310 1 2019 226 59 6 chr13 50150254 50150797 -69594101 - MER90 LTR ERV1 -3 572 1 230 229 14 57 chr13 50151551 50151621 -69593277 - L2 LINE L2 -4 3268 3202 711 296 22 9 chr13 50151636 50151866 -69593032 + MIR SINE MIR 16 248 -14 5473 86 9 14 chr13 50152535 50153197 -69591701 - L1PA10 LINE L1 -11 6157 5498 2567 64 0 10 chr13 50153197 50153508 -69591390 - AluSp SINE Alu -5 308 1 5473 86 9 14 chr13 50153508 50153647 -69591251 - L1PA10 LINE L1 -670 5498 5360 348 221 127 17 chr13 50153875 50154056 -69590842 + L1ME4a LINE L1 5704 5904 -217 1132 212 20 4 chr13 50154176 50154421 -69590477 + MER44D DNA MER2_type 1 249 -456 1128 151 33 0 chr13 50154420 50154632 -69590266 + MER44D DNA MER2_type 332 605 0 * 2154 116 7 0 chr13 50155120 50155422 -69589476 - AluSx SINE Alu -8 304 1 21 36 0 0 chr13 50155961 50155989 -69588909 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr13 50156429 50156460 -69588438 + GC_rich Low_complexity Low_complexity 1 31 0 1745 214 90 28 chr13 50157291 50157902 -69586996 - L1ME3 LINE L1 -22 6140 5492 685 160 131 51 chr13 50158503 50158678 -69586220 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr13 50160191 50160212 -69584686 + AT_rich Low_complexity Low_complexity 1 21 0 446 251 26 77 chr13 50161214 50161409 -69583489 + MIR SINE MIR 68 252 -10 310 284 83 41 chr13 50161471 50161689 -69583209 + L2 LINE L2 2824 3050 -222 188 206 0 0 chr13 50161783 50161817 -69583081 - L2 LINE L2 -13 3300 3267 23 68 0 0 chr13 50162261 50162305 -69582593 + AT_rich Low_complexity Low_complexity 1 44 0 391 247 70 71 chr13 50163765 50163982 -69580916 - MIR SINE MIR -42 220 4 2444 45 0 7 chr13 50164369 50164678 -69580220 - AluY SINE Alu 0 311 1 323 304 256 10 chr13 50165934 50166141 -69578757 + MIR SINE MIR 5 262 0 1940 105 10 66 chr13 50166238 50166589 -69578309 - AluSx SINE Alu 0 312 1 607 256 119 18 chr13 50167322 50167541 -69577357 - MIR SINE MIR -14 248 8 5755 216 64 51 chr13 50167942 50170808 -69574090 + L1ME3 LINE L1 39 3035 -3609 1752 161 43 0 chr13 50170809 50171088 -69573810 - AluJb SINE Alu -21 291 1 3751 237 112 25 chr13 50171088 50172394 -69572504 - L1MEc LINE L1 -4942 1454 35 23 54 0 0 chr13 50172858 50172895 -69572003 + AT_rich Low_complexity Low_complexity 1 37 0 525 300 91 4 chr13 50173206 50173436 -69571462 - MIR SINE MIR 0 262 13 203 286 20 0 chr13 50173482 50173531 -69571367 - MIR SINE MIR -147 115 66 804 264 31 9 chr13 50174860 50175087 -69569811 - MIR SINE MIR -8 254 23 21 0 0 0 chr13 50175091 50175112 -69569786 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr13 50175174 50175198 -69569700 + (T)n Simple_repeat Simple_repeat 1 24 0 210 37 0 0 chr13 50175653 50175680 -69569218 + (TG)n Simple_repeat Simple_repeat 1 27 0 6158 173 75 10 chr13 50177532 50178197 -69566701 - Charlie1a DNA MER1_type -1306 1455 834 252 0 0 0 chr13 50178197 50178225 -69566673 + (CA)n Simple_repeat Simple_repeat 2 29 0 6158 173 75 10 chr13 50178225 50178922 -69565976 - Charlie1a DNA MER1_type -1927 834 5 331 333 18 0 chr13 50181455 50181569 -69563329 + MIR SINE MIR 27 142 -66 1963 155 0 16 chr13 50183454 50183764 -69561134 - AluJb SINE Alu -3 309 5 4410 208 78 50 chr13 50183820 50184726 -69560172 + L1ME3 LINE L1 4231 5110 -1534 2130 150 3 15 chr13 50184726 50185067 -69559831 - MER1B DNA MER1_type 0 337 1 4410 208 78 50 chr13 50185067 50185171 -69559727 + L1ME3 LINE L1 5110 5210 -1434 1538 206 0 52 chr13 50185171 50185314 -69559584 + AluJo SINE Alu 4 153 -159 2284 87 0 10 chr13 50185314 50185612 -69559286 + AluY SINE Alu 1 295 -16 1538 206 0 52 chr13 50185612 50185793 -69559105 + AluJo SINE Alu 153 311 -1 4410 208 78 50 chr13 50185793 50186203 -69558695 + L1ME3 LINE L1 5210 5692 -952 716 232 53 68 chr13 50186284 50186618 -69558280 + L1ME3 LINE L1 6284 6637 -25 304 294 139 15 chr13 50187417 50187618 -69557280 - MIR SINE MIR -16 246 21 2106 107 28 16 chr13 50188874 50189193 -69555705 - MER4A LTR ERV1 0 664 342 410 151 0 0 chr13 50189183 50189256 -69555642 - LTR1B LTR ERV1 -753 73 1 * 596 120 10 0 chr13 50190224 50190324 -69554574 + (CGGGA)n Simple_repeat Simple_repeat 4 104 0 317 157 176 29 chr13 50190353 50190455 -69554443 - MER112 DNA MER1_type -143 117 1 1897 109 0 0 chr13 50190608 50190874 -69554024 + L1PA8 LINE L1 5907 6172 0 23 0 0 0 chr13 50190874 50190897 -69554001 + AT_rich Low_complexity Low_complexity 1 23 0 681 221 176 25 chr13 50191227 50191426 -69553472 - MIR SINE MIR -32 230 2 363 306 252 19 chr13 50192033 50192239 -69552659 - MIR SINE MIR -8 254 1 192 182 0 0 chr13 50192780 50192824 -69552074 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 193 241 157 83 chr13 50192824 50192932 -69551966 - MIR3 SINE MIR -5 203 88 357 24 0 0 chr13 50193628 50193670 -69551228 + (TG)n Simple_repeat Simple_repeat 2 43 0 389 263 154 40 chr13 50194013 50194188 -69550710 - MIR SINE MIR -57 205 11 1243 197 9 5 chr13 50197128 50197351 -69547547 - MER58A DNA MER1_type 0 224 1 1019 175 6 0 chr13 50198263 50198423 -69546475 + FAM SINE Alu 9 169 -16 1985 154 3 0 chr13 50198650 50198942 -69545956 - AluSx SINE Alu -19 293 1 472 224 119 66 chr13 50200565 50200868 -69544030 - L1ME4a LINE L1 -79 6042 5724 252 254 69 15 chr13 50201157 50201287 -69543611 - L1P LINE L1 -760 5391 5255 577 27 27 0 chr13 50203142 50203217 -69541681 - AluY SINE Alu -12 297 221 5680 116 23 3 chr13 50203331 50204872 -69540026 - L1PA16 LINE L1 0 6166 4615 507 284 97 24 chr13 50204894 50205438 -69539460 - L1ME4a LINE L1 -248 5942 5357 317 279 65 71 chr13 50205487 50205686 -69539212 - L1ME4a LINE L1 -913 5302 5104 2443 84 3 0 chr13 50205686 50205994 -69538904 - AluSp SINE Alu -4 309 1 317 279 65 71 chr13 50205994 50206088 -69538810 - L1ME4a LINE L1 -1111 5104 5011 862 323 88 38 chr13 50206102 50207011 -69537887 - L1ME4a LINE L1 -1487 4728 3767 2910 227 138 10 chr13 50207157 50208052 -69536846 - L1MC4 LINE L1 -419 7623 6614 3187 213 14 29 chr13 50208062 50208892 -69536006 - L1M4 LINE L1 -2127 4019 3202 1011 255 63 64 chr13 50208890 50209398 -69535500 - L1ME4a LINE L1 -4843 1553 1044 * 2283 81 3 0 chr13 50209398 50209705 -69535193 - AluSp SINE Alu 0 308 1 1011 255 63 64 chr13 50209705 50209894 -69535004 - L1ME4a LINE L1 -5352 1044 856 951 230 127 32 chr13 50209904 50210157 -69534741 - L1MD3 LINE L1 -15 7980 7686 2273 95 3 3 chr13 50210157 50210453 -69534445 + AluSp SINE Alu 1 296 -17 951 230 127 32 chr13 50210453 50210538 -69534360 - L1MD3 LINE L1 -309 7686 7610 248 86 0 0 chr13 50210540 50210575 -69534323 - L1MC4a LINE L1 -603 7205 7171 367 184 58 11 chr13 50210607 50210694 -69534204 - MIR SINE MIR 0 262 172 223 385 71 12 chr13 50211007 50211176 -69533722 + L2 LINE L2 2883 3061 -252 1622 142 7 157 chr13 50211268 50211676 -69533222 + MER7A DNA MER2_type 2 346 0 222 328 30 0 chr13 50211679 50211746 -69533152 + L2 LINE L2 3204 3272 0 203 222 0 14 chr13 50212419 50212491 -69532407 + (CATA)n Simple_repeat Simple_repeat 2 72 0 239 212 106 83 chr13 50213226 50213358 -69531540 + MIR3 SINE MIR 48 182 -26 221 295 0 0 chr13 50213421 50213482 -69531416 - MIR SINE MIR -14 248 188 406 345 57 17 chr13 50213681 50213858 -69531040 - MIR SINE MIR -50 212 29 1462 183 73 24 chr13 50214375 50214664 -69530234 + AluJo SINE Alu 1 303 -9 200 260 268 63 chr13 50214664 50214791 -69530107 - MIR SINE MIR -75 187 35 399 296 85 45 chr13 50215276 50215499 -69529399 - L2 LINE L2 0 3272 3041 2275 104 3 22 chr13 50217608 50217924 -69526974 - AluSx SINE Alu -2 310 1 782 273 53 20 chr13 50218096 50218396 -69526502 + L1ME LINE L1 5437 5746 -375 1914 155 0 37 chr13 50218432 50218755 -69526143 + AluJb SINE Alu 1 311 -1 302 296 12 0 chr13 50218796 50218877 -69526021 + CT-rich Low_complexity Low_complexity 3 84 0 274 261 18 63 chr13 50220465 50220576 -69524322 + L2 LINE L2 2230 2335 -979 790 137 11 28 chr13 50220618 50220800 -69524098 + GA-rich Low_complexity Low_complexity 1 179 0 255 306 54 76 chr13 50221262 50221612 -69523286 + L2 LINE L2 2856 3179 -93 1737 229 55 47 chr13 50221636 50222190 -69522708 + MER68 LTR ERV1 2 562 0 704 180 8 8 chr13 50222631 50222753 -69522145 - MER5B DNA MER1_type -6 172 51 2838 9 0 0 chr13 50224052 50224369 -69520529 - AluYb8 SINE Alu -1 317 1 184 306 0 0 chr13 50225042 50225091 -69519807 - L2 LINE L2 -2088 1226 1178 285 282 100 22 chr13 50225132 50225272 -69519626 - MIR3 SINE MIR -35 173 21 244 324 73 10 chr13 50226469 50226673 -69518225 + L1 LINE L1 3709 3925 -2221 882 96 32 0 chr13 50226676 50226801 -69518097 + THE1C LTR MaLR 195 323 -52 398 339 88 18 chr13 50226807 50226978 -69517920 + L1 LINE L1 3912 4094 -2052 289 253 102 49 chr13 50226987 50227252 -69517646 + L1 LINE L1 4151 4429 -1717 319 306 73 8 chr13 50227456 50227580 -69517318 - MIR SINE MIR -5 257 126 260 233 67 33 chr13 50227660 50227750 -69517148 - L1ME4a LINE L1 -44 6077 5985 189 195 0 0 chr13 50228174 50228215 -69516683 + (CA)n Simple_repeat Simple_repeat 2 42 0 43417 33 25 3 chr13 50228296 50234312 -69510586 + L1PA2 LINE L1 1 6150 -5 21 0 0 0 chr13 50234342 50234363 -69510535 + AT_rich Low_complexity Low_complexity 1 21 0 2179 62 7 4 chr13 50234814 50235090 -69509808 - AluSp SINE Alu -32 281 5 271 341 83 0 chr13 50236287 50236419 -69508479 + MIR SINE MIR 102 244 -18 685 256 28 11 chr13 50238870 50239046 -69505852 - MIR SINE MIR -8 254 76 476 290 62 42 chr13 50239108 50239301 -69505597 + MIR SINE MIR 59 255 -7 316 230 0 14 chr13 50239320 50239394 -69505504 + Tigger5 DNA MER2_type 2251 2323 0 446 96 110 14 chr13 50239474 50239547 -69505351 + Tigger5 DNA MER2_type 2244 2323 0 192 200 0 79 chr13 50239621 50239725 -69505173 - MIR SINE MIR -83 179 37 396 179 0 0 chr13 50240428 50240506 -69504392 + C-rich Low_complexity Low_complexity 4 81 0 620 248 107 20 chr13 50241351 50241579 -69503319 + MIR SINE MIR 13 262 0 318 50 0 0 chr13 50242432 50242472 -69502426 + (CA)n Simple_repeat Simple_repeat 2 41 0 186 206 0 0 chr13 50242882 50242916 -69501982 + MIR SINE MIR 107 140 -122 295 265 99 40 chr13 50244286 50244509 -69500389 + L1ME4a LINE L1 5886 6121 0 355 287 102 30 chr13 50245792 50245959 -69498939 - MIR SINE MIR -43 219 41 251 306 60 45 chr13 50245980 50246114 -69498784 + MER5A DNA MER1_type 17 152 -37 195 219 0 94 chr13 50247962 50248026 -69496872 - MER5A DNA MER1_type -51 138 81 205 263 144 6 chr13 50248311 50248424 -69496474 + MIR SINE MIR 54 256 -6 705 291 196 16 chr13 50248841 50249219 -69495679 + L2 LINE L2 2826 3271 -42 197 212 0 0 chr13 50251005 50251038 -69493860 + MER5B DNA MER1_type 4 36 -142 309 259 63 116 chr13 50251490 50251679 -69493219 + MER91A DNA MER1_type 3 181 -15 191 265 199 51 chr13 50253974 50254170 -69490728 + L2 LINE L2 1177 1401 -1913 611 282 31 6 chr13 50254500 50254663 -69490235 - MIR SINE MIR -48 214 48 626 273 26 39 chr13 50254778 50255009 -69489889 - MIR SINE MIR -12 250 23 1159 114 0 0 chr13 50255487 50255654 -69489244 + AluSg/x SINE Alu 143 309 -3 201 341 96 36 chr13 50255690 50255857 -69489041 + MIR SINE MIR 9 185 -77 538 213 19 84 chr13 50256029 50256184 -69488714 + MIR3 SINE MIR 30 174 -34 676 301 70 18 chr13 50256863 50257214 -69487684 - L1MC/D LINE L1 -469 5652 5374 243 309 0 0 chr13 50259303 50259387 -69485511 + L1MC4 LINE L1 6621 6704 -1338 256 359 35 7 chr13 50259435 50259577 -69485321 + L2 LINE L2 3158 3303 -10 351 294 24 8 chr13 50260616 50260742 -69484156 + MIR SINE MIR 66 193 -69 * 704 258 99 5 chr13 50260731 50260944 -69483954 + MIR SINE MIR 16 248 -14 515 290 43 24 chr13 50263315 50263648 -69481250 + MLT1J LTR MaLR 75 447 -64 432 223 163 41 chr13 50264336 50264742 -69480156 + MLT1E LTR MaLR 21 547 -8 383 219 14 0 chr13 50264855 50264928 -69479970 + MER91A DNA MER1_type 1 74 -122 183 315 56 0 chr13 50265019 50265108 -69479790 + L2 LINE L2 2766 2859 -455 847 232 38 21 chr13 50266411 50266648 -69478250 - L1MA9 LINE L1 -37 6275 6035 549 124 112 0 chr13 50266641 50266730 -69478168 + L1MA9 LINE L1 5681 5779 -533 * 467 114 25 0 chr13 50266730 50266809 -69478089 + (TCTG)n Simple_repeat Simple_repeat 3 83 0 1057 187 34 67 chr13 50266809 50267076 -69477822 + L1MA9 LINE L1 5783 6040 -272 303 322 144 0 chr13 50267076 50267194 -69477704 - MIR SINE MIR -78 184 50 798 131 8 23 chr13 50267694 50267816 -69477082 + FLAM_C SINE Alu 2 123 -189 294 73 0 0 chr13 50267816 50267857 -69477041 + (CA)n Simple_repeat Simple_repeat 2 42 0 336 261 41 118 chr13 50268601 50268796 -69476102 + MIR SINE MIR 33 212 -50 1008 102 7 0 chr13 50270833 50270980 -69473918 - L1PA15 LINE L1 0 6165 6018 1682 153 3 20 chr13 50271671 50271966 -69472932 - AluJo SINE Alu -22 290 1 204 248 168 24 chr13 50272276 50272401 -69472497 + MIR3 SINE MIR 51 193 -15 364 268 47 55 chr13 50272640 50272767 -69472131 + MIR SINE MIR 28 153 -109 14275 67 11 0 chr13 50272999 50275657 -69469241 + L1PA6 LINE L1 3491 6154 0 232 254 200 9 chr13 50275781 50275891 -69469007 - L2 LINE L2 -21 3251 3121 309 389 8 0 chr13 50276769 50276900 -69467998 + MIR SINE MIR 20 151 -111 747 222 35 43 chr13 50277563 50277793 -69467105 - MER112 DNA MER1_type -31 229 2 184 306 41 82 chr13 50278029 50278127 -69466771 - L2 LINE L2 -55 3217 3124 1603 199 167 12 chr13 50278210 50278612 -69466286 - MLT1C LTR MaLR 0 467 4 358 198 174 0 chr13 50279259 50279345 -69465553 - L2 LINE L2 -10 3303 3203 626 147 101 0 chr13 50279897 50280026 -69464872 - L1MB7 LINE L1 0 6184 6043 518 163 0 0 chr13 50280188 50280268 -69464630 - AluJ/FLAM SINE Alu -228 84 5 1743 181 53 0 chr13 50280631 50280969 -69463929 - L1MB4 LINE L1 -12 6168 5813 1042 167 0 0 chr13 50280969 50281131 -69463767 - AluSg/x SINE Alu -23 289 128 953 251 164 25 chr13 50282031 50282557 -69462341 + L1MC4a LINE L1 5670 6268 -1540 2303 240 28 35 chr13 50282890 50283996 -69460902 + L1MCc LINE L1 826 1945 -4887 791 245 46 42 chr13 50284345 50284582 -69460316 - L1ME2 LINE L1 -44 6120 5883 241 159 0 23 chr13 50285776 50285820 -69459078 - MER116 DNA Mariner 0 80 38 446 284 37 25 chr13 50285854 50286016 -69458882 - MIR SINE MIR -53 209 46 850 201 24 76 chr13 50287223 50287472 -69457426 + L1M4 LINE L1 3784 4019 -2127 345 248 137 19 chr13 50287695 50287856 -69457042 + L1MC5 LINE L1 7033 7212 -749 788 258 134 42 chr13 50287974 50288054 -69456844 + L1MC5 LINE L1 7249 7320 -641 1101 156 65 15 chr13 50288054 50288253 -69456645 - MER3 DNA MER1_type 0 209 1 788 258 134 42 chr13 50288253 50288718 -69456180 + L1MC5 LINE L1 7320 7844 -117 24 32 0 0 chr13 50288771 50288802 -69456096 + AT_rich Low_complexity Low_complexity 1 31 0 28 79 0 0 chr13 50288904 50288967 -69455931 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr13 50289073 50289094 -69455804 + AT_rich Low_complexity Low_complexity 1 21 0 438 258 17 17 chr13 50289394 50289514 -69455384 + MER94 DNA DNA 14 133 -1 247 239 65 43 chr13 50289932 50290024 -69454874 - MER5B DNA MER1_type -84 94 1 186 342 134 7 chr13 50291263 50291412 -69453486 - L2 LINE L2 -173 3099 2932 2192 186 72 33 chr13 50292108 50292418 -69452480 - MLT1D LTR MaLR -3 502 165 2406 80 3 3 chr13 50292418 50292718 -69452180 - AluSp SINE Alu -13 300 1 2192 186 72 33 chr13 50292718 50292890 -69452008 - MLT1D LTR MaLR -340 165 1 13663 48 74 5 chr13 50292966 50294715 -69450183 + L1P LINE L1 3 1873 -4273 499 226 58 13 chr13 50294728 50294883 -69450015 - L1MC4 LINE L1 -273 7769 7608 6591 74 21 29 chr13 50294889 50296689 -69448209 - SVA Other Other -551 1385 4 234 0 0 0 chr13 50298139 50298165 -69446733 + (TA)n Simple_repeat Simple_repeat 2 27 0 1672 112 123 4 chr13 50298722 50298979 -69445919 + AluSx SINE Alu 1 293 -9 2460 77 3 3 chr13 50298979 50299290 -69445608 + AluY SINE Alu 1 311 0 1672 112 123 4 chr13 50299290 50299301 -69445597 + AluSx SINE Alu 293 301 -1 214 158 0 18 chr13 50299403 50299460 -69445438 + (TG)n Simple_repeat Simple_repeat 1 56 0 274 325 171 23 chr13 50299571 50300127 -69444771 + L2 LINE L2 1861 2498 -816 182 264 113 85 chr13 50300479 50300585 -69444313 + L2 LINE L2 2983 3091 -181 492 301 61 9 chr13 50300617 50300846 -69444052 + MIR SINE MIR 8 248 -14 1151 219 0 18 chr13 50300938 50301166 -69443732 - MER58A DNA MER1_type 0 224 1 645 236 25 64 chr13 50301590 50301793 -69443105 - L1ME2 LINE L1 -7 6157 5963 677 296 66 34 chr13 50301916 50302681 -69442217 - L1MCc LINE L1 -4910 1513 1129 527 294 65 24 chr13 50303065 50303431 -69441467 - L1MCc LINE L1 -5977 446 31 336 102 0 0 chr13 50303875 50303924 -69440974 + (CA)n Simple_repeat Simple_repeat 1 49 0 234 346 52 7 chr13 50305983 50306119 -69438779 - L2 LINE L2 -6 3266 3125 1112 236 99 40 chr13 50306296 50306772 -69438126 + L2 LINE L2 2625 3071 -242 219 69 0 0 chr13 50306772 50306801 -69438097 + (TA)n Simple_repeat Simple_repeat 1 29 0 2197 116 3 3 chr13 50306801 50307103 -69437795 - AluSx SINE Alu -10 302 1 1112 236 99 40 chr13 50307103 50307272 -69437626 + L2 LINE L2 3070 3313 0 271 344 182 21 chr13 50307968 50308160 -69436738 + MIR SINE MIR 20 242 -20 186 294 15 15 chr13 50308254 50308322 -69436576 + L2 LINE L2 3241 3308 -5 201 39 0 0 chr13 50308586 50308612 -69436286 + (TTA)n Simple_repeat Simple_repeat 1 26 0 363 321 8 8 chr13 50308615 50308749 -69436149 - MIR SINE MIR -125 137 4 185 348 67 18 chr13 50309304 50309468 -69435430 + L2 LINE L2 1868 2039 -1275 410 195 125 0 chr13 50309671 50309799 -69435099 - L1ME4a LINE L1 0 6121 5978 458 312 81 29 chr13 50309800 50310185 -69434713 - L1ME4a LINE L1 -188 5933 5529 239 307 228 8 chr13 50312560 50312687 -69432211 - MIR3 SINE MIR -33 175 21 715 218 29 113 chr13 50313918 50314157 -69430741 + MER20 DNA MER1_type 1 219 0 563 114 114 0 chr13 50314180 50314268 -69430630 - 5S rRNA rRNA -23 98 1 1537 99 36 5 chr13 50314268 50314491 -69430407 + L1PA8 LINE L1 5919 6148 -24 223 303 0 0 chr13 50314737 50314803 -69430095 - MIR SINE MIR -136 126 61 182 276 0 0 chr13 50314935 50314993 -69429905 + MIR SINE MIR 97 154 -108 5892 193 67 84 chr13 50318529 50319449 -69425449 + L1MC4 LINE L1 5888 6822 -1220 384 77 0 0 chr13 50319449 50319501 -69425397 + (TG)n Simple_repeat Simple_repeat 1 52 0 5892 193 67 84 chr13 50319501 50320772 -69424126 + L1MC4 LINE L1 6822 8042 0 696 201 32 78 chr13 50320895 50321179 -69423719 + L1MC5 LINE L1 7660 7930 -31 2038 107 3 17 chr13 50321235 50321526 -69423372 - AluJb SINE Alu -2 310 24 185 309 25 37 chr13 50322036 50322117 -69422781 - MIR SINE MIR -162 100 21 1142 233 108 17 chr13 50323297 50323600 -69421298 - MLT1A2 LTR MaLR -4 370 51 1106 192 9 49 chr13 50323687 50323911 -69420987 - MER58A DNA MER1_type -8 216 2 2162 93 0 81 chr13 50323933 50324254 -69420644 - AluSx SINE Alu -17 295 1 189 0 0 0 chr13 50324259 50324280 -69420618 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1473 80 25 5 chr13 50324282 50324483 -69420415 - L1PA10 LINE L1 -16 6152 5948 424 231 154 35 chr13 50324606 50324775 -69420123 - MIR SINE MIR -8 254 66 1596 184 118 19 chr13 50327173 50327587 -69417311 + MLT1C LTR MaLR 6 460 -7 404 171 0 11 chr13 50327593 50327681 -69417217 + GA-rich Low_complexity Low_complexity 1 87 0 312 291 122 23 chr13 50327681 50327853 -69417045 - MIR SINE MIR -10 252 64 276 77 0 0 chr13 50327856 50327895 -69417003 + (T)n Simple_repeat Simple_repeat 1 39 0 1271 216 134 26 chr13 50328371 50328759 -69416139 + MLT1C LTR MaLR 6 435 -32 2898 231 41 3 chr13 50328759 50329388 -69415510 - MER82 DNA MER2_type 0 653 1 251 394 62 13 chr13 50329664 50329890 -69415008 + L2 LINE L2 3018 3254 -18 253 250 279 0 chr13 50330140 50330280 -69414618 - L2 LINE L2 -252 3061 2883 367 320 20 14 chr13 50330349 50330496 -69414402 - L3 LINE CR1 -50 1527 1380 213 281 49 12 chr13 50330589 50330671 -69414227 - MIR SINE MIR -105 157 73 217 306 35 12 chr13 50330826 50330911 -69413987 - L3 LINE CR1 -242 1335 1249 224 237 8 93 chr13 50330947 50331065 -69413833 + MIR SINE MIR 107 214 -48 352 277 52 32 chr13 50331124 50331279 -69413619 + MIR3 SINE MIR 3 160 -48 21 0 0 0 chr13 50332065 50332086 -69412812 + AT_rich Low_complexity Low_complexity 1 21 0 249 281 0 0 chr13 50333350 50333407 -69411491 + L2 LINE L2 3244 3300 -13 348 276 60 37 chr13 50333445 50333579 -69411319 + MIR3 SINE MIR 27 163 -45 4634 196 79 52 chr13 50333688 50334994 -69409904 + Charlie1a DNA MER1_type 1 1341 -114 537 148 96 17 chr13 50335101 50335216 -69409682 + Charlie1a DNA MER1_type 1332 1455 0 986 210 126 47 chr13 50335647 50336028 -69408870 + MER69 DNA AcHobo 2115 2525 -1 2218 123 0 3 chr13 50336045 50336354 -69408544 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 50336442 50336463 -69408435 + AT_rich Low_complexity Low_complexity 1 21 0 194 139 0 28 chr13 50336539 50336575 -69408323 + MIR3 SINE MIR 153 187 -21 2198 96 7 10 chr13 50336919 50337220 -69407678 - AluSg SINE Alu -10 300 1 261 221 32 32 chr13 50337616 50337711 -69407187 + (TTCA)n Simple_repeat Simple_repeat 1 95 0 1510 179 4 4 chr13 50337949 50338206 -69406692 + AluJo SINE Alu 11 267 -45 190 284 30 0 chr13 50338506 50338573 -69406325 - MIR SINE MIR -95 167 99 * 582 351 130 10 chr13 50338554 50339075 -69405823 + L2 LINE L2 2732 3313 0 209 309 48 12 chr13 50339066 50339150 -69405748 - MIR SINE MIR -156 106 20 * 1893 142 10 42 chr13 50339225 50339534 -69405364 + AluJo SINE Alu 1 299 -13 1309 91 5 61 chr13 50340105 50340303 -69404595 - AluSq SINE Alu -126 187 1 2832 234 61 25 chr13 50340304 50341091 -69403807 - L1ME2 LINE L1 -191 5973 5216 1846 182 30 45 chr13 50341091 50341487 -69403411 - MLT1B LTR MaLR 0 390 1 2832 234 61 25 chr13 50341487 50342276 -69402622 - L1ME2 LINE L1 -948 5216 4334 1270 256 82 8 chr13 50342898 50343265 -69401633 - MLT1I LTR MaLR -4 405 12 200 273 52 91 chr13 50343286 50343440 -69401458 + L2 LINE L2 3166 3313 0 2488 195 108 45 chr13 50343458 50344141 -69400757 + LTR8A LTR ERV1 2 727 0 198 274 16 0 chr13 50345416 50345478 -69399420 - L2 LINE L2 -1 3312 3250 964 299 22 38 chr13 50347713 50348165 -69396733 + L2 LINE L2 1949 2393 -921 2368 87 0 0 chr13 50348230 50348517 -69396381 - AluSc SINE Alu -22 287 1 673 156 9 0 chr13 50348517 50348626 -69396272 - MLT1B LTR MaLR -280 110 1 373 248 170 13 chr13 50348725 50348878 -69396020 + MIR SINE MIR 65 241 -21 1422 146 5 0 chr13 50349190 50349402 -69395496 + AluSg/x SINE Alu 99 311 -1 1720 194 3 7 chr13 50349945 50350255 -69394643 + AluJo SINE Alu 1 309 -3 1891 151 7 13 chr13 50350412 50350717 -69394181 + AluJb SINE Alu 1 303 -9 530 267 79 20 chr13 50350813 50351015 -69393883 - MIR SINE MIR -47 215 2 461 169 0 0 chr13 50351263 50351340 -69393558 + L1MB3 LINE L1 5857 5933 -247 4117 88 18 0 chr13 50351340 50351884 -69393014 + MER41A LTR ERV1 1 554 0 2746 108 11 3 chr13 50351884 50352265 -69392633 + MER41A-int LTR ERV1 1 384 -5562 3505 158 23 7 chr13 50352265 50352836 -69392062 + LTR22 LTR ERVK 1 580 0 953 155 0 0 chr13 50352870 50353012 -69391886 + MER41A-int LTR ERV1 379 520 -5426 865 168 37 6 chr13 50352999 50353160 -69391738 + MER41A-int LTR ERV1 473 638 -5308 * 6923 138 84 58 chr13 50353140 50354608 -69390290 + MER41A-int LTR ERV1 3226 4731 -3085 * 9412 63 50 40 chr13 50354590 50355690 -69389208 + MER41A-int LTR ERV1 4574 5691 -255 2165 91 35 0 chr13 50355690 50355977 -69388921 + AluSc SINE Alu 1 297 -12 9412 63 50 40 chr13 50355977 50356228 -69388670 + MER41A-int LTR ERV1 5691 5938 -8 4186 97 0 4 chr13 50356232 50356788 -69388110 + MER41A LTR ERV1 1 554 0 1280 160 29 8 chr13 50356788 50357032 -69387866 + L1MB3 LINE L1 5933 6181 -2 45 0 0 0 chr13 50357063 50357108 -69387790 + AT_rich Low_complexity Low_complexity 1 45 0 340 256 151 10 chr13 50357699 50357898 -69387000 + MER110A LTR ERV1 242 468 0 1765 164 9 46 chr13 50358888 50359212 -69385686 + AluJo SINE Alu 1 312 0 500 259 59 12 chr13 50359388 50359558 -69385340 - LTR33A LTR ERVL 0 523 346 189 298 0 0 chr13 50360134 50360181 -69384717 + MER5A DNA MER1_type 141 187 -2 200 314 196 0 chr13 50360355 50360457 -69384441 - L2 LINE L2 -2 3270 3149 195 69 0 0 chr13 50360591 50360620 -69384278 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 254 36 0 chr13 50361153 50361208 -69383690 + polypyrimidine Low_complexity Low_complexity 2 58 0 281 233 111 0 chr13 50361233 50361323 -69383575 - L1ME4a LINE L1 -2 6119 6020 3859 149 32 53 chr13 50361875 50362564 -69382334 + L1MB1 LINE L1 5279 5940 -228 2124 135 10 0 chr13 50362564 50362861 -69382037 + AluSx SINE Alu 1 300 -12 3859 149 32 53 chr13 50362861 50362963 -69381935 + L1MB1 LINE L1 5940 6043 -125 4052 106 2 7 chr13 50362963 50363518 -69381380 + MER41A LTR ERV1 1 552 -2 528 101 101 0 chr13 50363522 50363611 -69381287 + MER4A LTR ERV1 1 98 -566 1733 143 162 73 chr13 50363611 50363982 -69380916 + MER4A LTR ERV1 261 664 0 2934 104 144 22 chr13 50363985 50364521 -69380377 + MER4A-int LTR ERV1 1 601 -5997 944 112 158 112 chr13 50364507 50364625 -69380273 + MER4A-int LTR ERV1 503 614 -4401 * 408 71 0 0 chr13 50364625 50364681 -69380217 + (TG)n Simple_repeat Simple_repeat 2 57 0 944 112 158 112 chr13 50364681 50364902 -69379996 + MER4A-int LTR ERV1 614 779 -4236 * 16656 106 85 54 chr13 50364897 50365047 -69379851 + MER4A-int LTR ERV1 1159 1303 -5295 2300 107 0 0 chr13 50365047 50365336 -69379562 + AluSg SINE Alu 1 289 -21 16656 106 85 54 chr13 50365336 50369083 -69375815 + MER4A-int LTR ERV1 1303 6598 0 538 122 89 0 chr13 50369084 50369174 -69375724 + MER4A LTR ERV1 1 98 -566 1674 152 165 70 chr13 50369174 50369543 -69375355 + MER4A LTR ERV1 261 664 0 661 157 33 0 chr13 50369548 50369669 -69375229 + L1MB1 LINE L1 6043 6167 -1 35 24 0 0 chr13 50369670 50369712 -69375186 + AT_rich Low_complexity Low_complexity 1 42 0 1925 123 3 59 chr13 50369933 50370299 -69374599 - MER4A LTR ERV1 0 664 261 649 131 0 10 chr13 50370299 50370398 -69374500 - MER4A LTR ERV1 -566 98 1 2296 93 3 0 chr13 50370977 50371267 -69373631 + AluSx SINE Alu 1 291 -21 468 286 23 41 chr13 50371291 50371462 -69373436 + MER5B DNA MER1_type 5 172 -6 1643 188 108 78 chr13 50374596 50374919 -69369979 + MLT1D LTR MaLR 1 346 -159 207 0 0 0 chr13 50374919 50374942 -69369956 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1643 188 108 78 chr13 50374942 50375108 -69369790 + MLT1D LTR MaLR 346 505 0 284 267 109 89 chr13 50375108 50375355 -69369543 - L2 LINE L2 -27 3245 2994 434 171 288 14 chr13 50375458 50375604 -69369294 + MER5A DNA MER1_type 4 189 0 1346 186 0 23 chr13 50375879 50376142 -69368756 - AluJo SINE Alu -16 296 40 923 242 127 29 chr13 50376519 50376833 -69368065 + MER45C DNA AcHobo 1 345 -608 478 266 0 9 chr13 50376858 50376967 -69367931 + MER45C DNA AcHobo 697 804 -149 210 91 0 0 chr13 50376971 50377004 -69367894 + (CAGAGA)n Simple_repeat Simple_repeat 5 37 0 3022 140 39 51 chr13 50377039 50377157 -69367741 - L1MB2 LINE L1 -7 6164 6046 1839 157 30 7 chr13 50377157 50377462 -69367436 - AluJo SINE Alu 0 312 1 3022 140 39 51 chr13 50377462 50377914 -69366984 - L1MB2 LINE L1 -125 6046 5601 286 320 0 0 chr13 50378231 50378309 -69366589 - L2 LINE L2 -5 3308 3231 21 0 0 0 chr13 50378691 50378712 -69366186 + AT_rich Low_complexity Low_complexity 1 21 0 185 327 0 19 chr13 50378890 50378942 -69365956 - L2 LINE L2 -190 3082 3032 767 255 78 33 chr13 50379842 50380085 -69364813 - MIR SINE MIR -5 257 4 215 308 170 38 chr13 50380085 50380237 -69364661 + MIR SINE MIR 45 217 -45 622 193 118 57 chr13 50380537 50380681 -69364217 - L1ME3 LINE L1 -4 6158 5993 2134 113 0 0 chr13 50380681 50381005 -69363893 + AluSx SINE Alu 1 324 0 622 193 118 57 chr13 50381005 50381087 -69363811 - L1ME3 LINE L1 -169 5993 5917 508 276 35 14 chr13 50381633 50381778 -69363120 - MIR SINE MIR -111 151 4 2782 87 6 6 chr13 50383335 50383690 -69361208 - THE1A LTR MaLR 0 355 1 2006 96 19 4 chr13 50383770 50384061 -69360837 + AluSq SINE Alu 11 305 0 574 290 39 23 chr13 50384242 50384501 -69360397 + L1M4 LINE L1 3935 4197 -1949 1794 179 43 3 chr13 50384890 50385215 -69359683 + MER74A LTR ERVL 34 371 -187 257 239 113 31 chr13 50386002 50386172 -69358726 - L1ME LINE L1 -5323 1311 1043 2595 177 22 0 chr13 50386898 50387345 -69357553 - LTR32 LTR ERVL 0 471 15 492 258 16 16 chr13 50387759 50387887 -69357011 + L2 LINE L2 3142 3269 -3 1812 164 11 3 chr13 50387909 50388195 -69356703 + AluJo SINE Alu 1 288 -24 642 271 203 25 chr13 50388247 50388568 -69356330 - L2 LINE L2 -765 2549 2172 488 301 154 4 chr13 50388657 50388983 -69355915 + LTR33 LTR ERVL 114 521 0 813 252 73 28 chr13 50389005 50389322 -69355576 - L2 LINE L2 -1168 2146 1816 326 331 33 16 chr13 50389441 50389562 -69355336 - MIR SINE MIR 0 262 140 298 317 41 16 chr13 50389565 50389688 -69355210 - L2 LINE L2 0 3313 3188 3439 16 5 3 chr13 50389757 50390134 -69354764 + L1PA2 LINE L1 5778 6155 0 2274 113 0 0 chr13 50390331 50390632 -69354266 + AluSx SINE Alu 6 306 -6 236 193 18 0 chr13 50390756 50390813 -69354085 + (CA)n Simple_repeat Simple_repeat 1 58 0 550 268 26 103 chr13 50391845 50392062 -69352836 + MLT1J LTR MaLR 1 243 -268 2363 143 114 5 chr13 50392211 50392597 -69352301 + MSTA LTR MaLR 1 428 0 1809 139 3 7 chr13 50392597 50392884 -69352014 + MSTA-int LTR MaLR 1 286 -1365 2906 169 24 12 chr13 50392897 50393395 -69351503 + MSTA-int LTR MaLR 435 938 -642 3693 53 5 7 chr13 50393395 50393844 -69351054 + LTR7 LTR ERV1 1 448 -2 20507 88 26 16 chr13 50393846 50396814 -69348084 + HERVH LTR ERV1 1 2995 -4718 943 140 7 0 chr13 50396793 50396943 -69347955 + HERVH LTR ERV1 3140 3290 -4423 * 967 145 0 0 chr13 50396942 50397087 -69347811 + HERVH LTR ERV1 3500 3644 -4069 * 2289 160 73 0 chr13 50397086 50397468 -69347430 + HERVH LTR ERV1 4740 5149 -2564 1365 119 20 0 chr13 50397505 50397706 -69347192 + HERVH LTR ERV1 5615 5819 -1894 * 2552 81 45 16 chr13 50397704 50398085 -69346813 + HERVH LTR ERV1 7322 7713 0 3744 53 0 7 chr13 50398085 50398536 -69346362 + LTR7 LTR ERV1 1 448 -2 4085 137 8 20 chr13 50398538 50399193 -69345705 + MSTA-int LTR MaLR 934 1580 0 358 252 9 54 chr13 50399231 50399271 -69345627 + MLT1J LTR MaLR 376 416 -95 2428 125 122 8 chr13 50399271 50399655 -69345243 + MSTA LTR MaLR 1 428 0 358 252 9 54 chr13 50399655 50399725 -69345173 + MLT1J LTR MaLR 416 481 -30 202 300 173 55 chr13 50400642 50400752 -69344146 + MIR3 SINE MIR 14 136 -72 1092 77 0 0 chr13 50401342 50401472 -69343426 + AluSp SINE Alu 1 130 -183 1375 109 0 0 chr13 50401554 50401738 -69343160 + AluSp SINE Alu 130 313 0 344 329 35 21 chr13 50402699 50402842 -69342056 + MIR SINE MIR 20 164 -98 232 287 193 7 chr13 50403040 50403190 -69341708 + MIR SINE MIR 84 261 -1 1400 196 104 13 chr13 50403210 50403526 -69341372 + MER2 DNA MER2_type 1 345 0 220 224 0 15 chr13 50404754 50404821 -69340077 + (TA)n Simple_repeat Simple_repeat 1 66 0 292 325 80 7 chr13 50405435 50405586 -69339312 + LTR16C LTR ERVL 298 459 -32 357 297 7 19 chr13 50406493 50406648 -69338250 + L1MC5 LINE L1 5301 5453 -2355 550 331 129 18 chr13 50407343 50407724 -69337174 + L2 LINE L2 1849 2271 -1043 23 33 0 0 chr13 50408627 50408657 -69336241 + AT_rich Low_complexity Low_complexity 1 30 0 644 304 67 44 chr13 50409239 50409824 -69335074 + HAL1b LINE L1 61 658 -690 2217 244 80 46 chr13 50410102 50411098 -69333800 + L1MC5 LINE L1 6476 7522 -439 313 223 10 68 chr13 50411217 50411320 -69333578 + L1ME3A LINE L1 5975 6071 -99 676 321 160 8 chr13 50411516 50411986 -69332912 + L3 LINE CR1 844 1384 -193 2205 119 7 0 chr13 50411986 50412281 -69332617 + AluSx SINE Alu 1 297 -15 2426 67 0 10 chr13 50412352 50412650 -69332248 + AluY SINE Alu 1 295 -16 667 284 125 58 chr13 50412906 50413385 -69331513 + MLT1K LTR MaLR 76 586 -2 324 0 0 0 chr13 50414002 50414038 -69330860 + (CA)n Simple_repeat Simple_repeat 2 37 0 413 237 0 0 chr13 50414486 50414562 -69330336 + MER5A DNA MER1_type 31 106 -83 2177 169 22 37 chr13 50415315 50415724 -69329174 - MER57A LTR ERV1 0 403 1 589 260 103 5 chr13 50416631 50416835 -69328063 + MIR SINE MIR 35 258 -4 272 301 12 0 chr13 50417578 50417661 -69327237 + L2 LINE L2 2239 2322 -992 317 93 93 0 chr13 50417661 50417715 -69327183 - HSMAR1 DNA Mariner 0 1287 1229 462 234 199 0 chr13 50417725 50417896 -69327002 + L2 LINE L2 2337 2541 -773 3998 105 15 11 chr13 50418265 50418789 -69326109 - MER1A DNA MER1_type -1 526 1 707 293 63 52 chr13 50418790 50419312 -69325586 + L1ME3A LINE L1 531 1058 -5061 1393 266 46 57 chr13 50419610 50420154 -69324744 + L1ME3A LINE L1 3778 4315 -1814 794 240 6 6 chr13 50420154 50420337 -69324561 + L1MC4 LINE L1 6878 7060 -982 612 237 132 0 chr13 50420528 50420707 -69324191 - LTR41 LTR ERVL -556 239 9 648 293 58 17 chr13 50421338 50421821 -69323077 + L1ME3A LINE L1 4868 5407 -738 338 125 0 0 chr13 50421821 50421869 -69323029 - Charlie3 DNA MER1_type -2442 268 221 944 214 145 126 chr13 50421887 50422603 -69322295 + L1ME3A LINE L1 5401 6130 -23 2146 89 0 38 chr13 50422647 50422970 -69321928 + AluSp SINE Alu 2 313 0 209 179 0 54 chr13 50423006 50423062 -69321836 + MIR SINE MIR 90 142 -120 2631 109 11 92 chr13 50423589 50424055 -69320843 - LTR12 LTR ERV1 -234 480 53 232 269 0 0 chr13 50424055 50424107 -69320791 - LTR30 LTR ERV1 -670 52 1 5595 108 8 4 chr13 50424107 50424901 -69319997 - HERV9 LTR ERV1 0 8399 7603 2290 177 120 62 chr13 50424879 50425620 -69319278 - Harlequin LTR ERV1 -5156 1740 957 * 22 0 0 0 chr13 50425871 50425893 -69319005 + AT_rich Low_complexity Low_complexity 1 22 0 243 271 37 28 chr13 50426183 50426290 -69318608 + MIR3 SINE MIR 93 200 -8 517 333 89 22 chr13 50426752 50427244 -69317654 + L2 LINE L2 1738 2262 -1052 394 274 159 44 chr13 50427263 50427646 -69317252 + L2 LINE L2 2887 3313 0 1337 131 11 24 chr13 50427772 50427974 -69316924 + MSTB1 LTR MaLR 1 204 -222 2356 95 7 0 chr13 50427974 50428269 -69316629 + AluSq SINE Alu 1 297 -16 1337 131 11 24 chr13 50428269 50428421 -69316477 + MSTB1 LTR MaLR 204 426 0 1217 249 103 46 chr13 50428495 50429089 -69315809 + MLT1G3 LTR MaLR 3 595 0 312 203 163 2 chr13 50429223 50429372 -69315526 - MER63A DNA MER1_type 0 210 1 2403 88 0 7 chr13 50429893 50430201 -69314697 + AluSq SINE Alu 1 306 -7 233 262 71 50 chr13 50430584 50430725 -69314173 + L1MC/D LINE L1 5746 5889 -1919 1952 182 46 26 chr13 50431016 50431433 -69313465 + MSTC LTR MaLR 4 428 0 373 238 0 36 chr13 50431564 50431648 -69313250 + L2 LINE L2 3213 3293 -20 * 606 294 97 0 chr13 50431634 50431872 -69313026 - L2 LINE L2 -141 3172 2912 606 275 38 9 chr13 50433314 50433525 -69311373 + MIR SINE MIR 30 246 -16 1359 124 10 0 chr13 50434033 50434227 -69310671 - AluSg/x SINE Alu -10 300 105 1317 307 69 32 chr13 50434815 50435075 -69309823 - L2 LINE L2 -559 2755 2506 1950 152 0 0 chr13 50435075 50435365 -69309533 + AluSx SINE Alu 1 290 -22 1317 307 69 32 chr13 50435365 50435882 -69309016 - L2 LINE L2 -808 2506 1949 187 302 0 0 chr13 50437339 50437392 -69307506 - L2 LINE L2 -16 3256 3204 620 342 95 41 chr13 50437410 50438615 -69306283 - L2 LINE L2 -27 3245 1968 305 321 167 4 chr13 50438637 50438883 -69306015 - L2 LINE L2 -1494 1820 1535 232 276 71 61 chr13 50439375 50439473 -69305425 + L2 LINE L2 3182 3280 -33 1846 183 0 6 chr13 50439592 50439903 -69304995 - AluJo SINE Alu -3 309 1 1438 142 5 0 chr13 50440446 50440658 -69304240 - AluSg/x SINE Alu -1 311 99 357 255 170 13 chr13 50440970 50441123 -69303775 - MIR SINE MIR -21 241 65 1798 181 25 60 chr13 50441222 50441331 -69303567 + MLT1B LTR MaLR 1 112 -278 2291 90 0 0 chr13 50441331 50441713 -69303185 + AluSc SINE Alu 1 382 0 1798 181 25 60 chr13 50441713 50442001 -69302897 + MLT1B LTR MaLR 112 385 -5 265 311 87 0 chr13 50443202 50443305 -69301593 + L2 LINE L2 3160 3271 -1 225 316 13 0 chr13 50443526 50443605 -69301293 + MIR SINE MIR 162 241 -21 1799 150 49 0 chr13 50444007 50444293 -69300605 + AluJb SINE Alu 1 300 -12 231 363 71 12 chr13 50444675 50444843 -69300055 + MIR SINE MIR 15 192 -70 244 282 28 33 chr13 50445581 50445795 -69299103 + (CACG)n Simple_repeat Simple_repeat 1 212 0 221 211 0 40 chr13 50445808 50445884 -69299014 + G-rich Low_complexity Low_complexity 5 77 0 33 0 0 0 chr13 50446103 50446136 -69298762 + GC_rich Low_complexity Low_complexity 1 33 0 2305 88 0 7 chr13 50447716 50448011 -69296887 + AluSp SINE Alu 1 293 -20 245 294 7 55 chr13 50448420 50448566 -69296332 + L2 LINE L2 2918 3056 -216 385 362 16 5 chr13 50448682 50448867 -69296031 - L2 LINE L2 -932 2382 2196 328 261 18 27 chr13 50448887 50448998 -69295900 - MIR SINE MIR -2 260 151 485 310 154 19 chr13 50449005 50449473 -69295425 - L2 LINE L2 -1178 2136 1606 1732 164 16 31 chr13 50449511 50449828 -69295070 - AluJo SINE Alu 0 312 1 870 196 0 21 chr13 50450334 50450528 -69294370 + MIR SINE MIR 36 225 -37 188 152 0 0 chr13 50450767 50450800 -69294098 - MIR SINE MIR -66 142 110 219 132 57 19 chr13 50451722 50451775 -69293123 + (TATG)n Simple_repeat Simple_repeat 4 58 0 202 291 76 0 chr13 50452779 50452858 -69292040 - L2 LINE L2 -582 2732 2648 23 33 0 0 chr13 50453590 50453620 -69291278 + AT_rich Low_complexity Low_complexity 1 30 0 205 273 0 0 chr13 50455456 50455511 -69289387 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 807 251 115 96 chr13 50456601 50457080 -69287818 - MLT1J LTR MaLR 0 511 24 549 254 36 0 chr13 50457996 50458134 -69286764 + MIR3 SINE MIR 39 181 -27 201 132 53 0 chr13 50458184 50458222 -69286676 + GA-rich Low_complexity Low_complexity 2 41 0 388 133 19 0 chr13 50461774 50461852 -69283046 + MER5A DNA MER1_type 4 83 -106 1009 294 81 29 chr13 50462753 50463310 -69281588 - L1ME4a LINE L1 -18 6103 5518 185 230 380 10 chr13 50465005 50465105 -69279793 + MIR3 SINE MIR 20 156 -52 2220 119 0 7 chr13 50467055 50467365 -69277533 - AluSq SINE Alu -5 308 1 574 221 147 0 chr13 50467799 50467962 -69276936 + L2 LINE L2 3127 3313 0 1558 220 33 66 chr13 50468482 50469157 -69275741 - LTR9 LTR ERV1 0 612 1 325 222 17 60 chr13 50469265 50469382 -69275516 + MIR SINE MIR 150 261 -1 641 198 39 17 chr13 50470814 50471006 -69273892 + MIR SINE MIR 23 216 -46 351 310 65 25 chr13 50471652 50471852 -69273046 + L2 LINE L2 2285 2492 -822 518 266 248 45 chr13 50471944 50472384 -69272514 - MLT1H LTR MaLR 0 549 21 210 204 0 0 chr13 50472729 50472773 -69272125 + L2 LINE L2 3005 3048 -224 278 167 0 19 chr13 50473372 50473426 -69271472 + MER91B DNA MER1_type 2 54 -136 421 204 30 68 chr13 50478360 50478492 -69266406 - L1ME3A LINE L1 0 6170 6044 527 172 278 41 chr13 50478830 50478999 -69265899 - MER3 DNA MER1_type 0 209 1 357 337 64 16 chr13 50479815 50480002 -69264896 + L3b LINE CR1 1233 1428 -155 3635 147 34 8 chr13 50480206 50480845 -69264053 - L1MB3 LINE L1 -2 6181 5526 648 275 156 16 chr13 50481043 50481412 -69263486 + L2 LINE L2 2701 3139 -174 2611 149 19 18 chr13 50481422 50481879 -69263019 - MLT1C LTR MaLR -12 443 1 474 262 262 12 chr13 50482579 50483002 -69261896 + L2 LINE L2 2401 2929 -385 496 242 48 0 chr13 50483287 50483411 -69261487 + L2 LINE L2 3183 3312 -1 444 315 61 30 chr13 50484019 50484216 -69260682 - MIR SINE MIR -2 260 58 471 256 62 0 chr13 50484274 50484403 -69260495 - MER5A DNA MER1_type -2 187 51 1071 185 0 0 chr13 50488007 50488180 -69256718 + FAM SINE Alu 1 173 -2 385 227 103 0 chr13 50488247 50488344 -69256554 - L1MA4 LINE L1 -7 6293 6187 656 284 18 0 chr13 50488446 50488615 -69256283 + MIR SINE MIR 7 178 -84 592 204 45 19 chr13 50488780 50488937 -69255961 - MLT2F LTR ERVL -255 408 248 236 246 284 15 chr13 50488965 50489099 -69255799 - MLT2F LTR ERVL -489 174 5 207 286 22 44 chr13 50489102 50489193 -69255705 + MIR SINE MIR 174 262 0 220 225 0 0 chr13 50489193 50489233 -69255665 + (CAT)n Simple_repeat Simple_repeat 2 41 0 253 230 40 0 chr13 50489491 50489565 -69255333 + (TA)n Simple_repeat Simple_repeat 1 77 0 583 201 65 65 chr13 50490415 50490584 -69254314 - L2 LINE L2 -2 3311 3143 342 202 164 112 chr13 50491472 50491759 -69253139 + MLT1K LTR MaLR 274 575 -13 21 0 0 0 chr13 50493949 50493970 -69250928 + AT_rich Low_complexity Low_complexity 1 21 0 211 287 134 49 chr13 50495027 50495191 -69249707 + MER5A DNA MER1_type 12 189 0 436 200 0 0 chr13 50496026 50496096 -69248802 + MER58A DNA MER1_type 1 70 -37 252 0 0 0 chr13 50496096 50496124 -69248774 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 324 49 10 chr13 50496135 50496237 -69248661 + HAL1 LINE L1 407 512 -1995 449 171 13 0 chr13 50496399 50496475 -69248423 - MER3 DNA MER1_type -132 77 1 24 32 0 0 chr13 50496582 50496613 -69248285 + AT_rich Low_complexity Low_complexity 1 31 0 1080 170 32 50 chr13 50496691 50496909 -69247989 + MER20 DNA MER1_type 1 214 -5 820 139 0 16 chr13 50496973 50497095 -69247803 - FLAM_A SINE Alu -16 126 7 1442 133 44 0 chr13 50497780 50498006 -69246892 - MER46A DNA MER2_type 0 236 1 192 222 67 0 chr13 50498270 50498315 -69246583 - L2 LINE L2 0 3313 3266 1551 195 0 16 chr13 50498620 50498927 -69245971 + AluJo SINE Alu 1 302 -10 1489 219 39 28 chr13 50498939 50499474 -69245424 + L1ME LINE L1 5108 5710 -460 220 359 45 41 chr13 50500340 50500520 -69244378 + L3b LINE CR1 1268 1446 -137 3192 123 12 18 chr13 50500520 50501026 -69243872 + L1PB4 LINE L1 5653 6155 -1 220 359 45 41 chr13 50501026 50501042 -69243856 + L3b LINE CR1 1446 1460 -123 2186 95 0 3 chr13 50501042 50501337 -69243561 + AluSc SINE Alu 1 294 -15 220 359 45 41 chr13 50501337 50501359 -69243539 + L3b LINE CR1 1460 1488 -95 359 210 50 20 chr13 50506199 50506299 -69238599 - MER117 DNA MER1_type -94 103 1 23 0 0 0 chr13 50506374 50506397 -69238501 + AT_rich Low_complexity Low_complexity 1 23 0 1162 189 18 40 chr13 50506415 50506571 -69238327 - MER58A DNA MER1_type -2197 223 72 2096 117 0 3 chr13 50506571 50506870 -69238028 - AluSg SINE Alu -12 298 1 1162 189 18 40 chr13 50506870 50506941 -69237957 - MER58A DNA MER1_type -2348 72 1 252 0 0 0 chr13 50507297 50507325 -69237573 + (A)n Simple_repeat Simple_repeat 1 28 0 216 111 56 0 chr13 50507726 50507762 -69237136 + L2 LINE L2 3268 3305 -8 1688 149 26 13 chr13 50508408 50508716 -69236182 - AluJo SINE Alu 0 312 1 2242 120 0 0 chr13 50509526 50509835 -69235063 + AluSx SINE Alu 1 309 -3 2338 59 3 13 chr13 50510433 50510739 -69234159 + AluY SINE Alu 1 303 -8 1123 87 0 17 chr13 50511973 50512207 -69232691 + (TCC)n Simple_repeat Simple_repeat 1 408 0 433 317 41 7 chr13 50512258 50512403 -69232495 + MIR SINE MIR 2 151 -111 2121 115 41 0 chr13 50512486 50512826 -69232072 + L1MA5A LINE L1 5944 6297 0 193 200 0 0 chr13 50512869 50512904 -69231994 + MIR SINE MIR 158 192 -70 761 281 99 50 chr13 50513009 50513065 -69231833 + L1ME4a LINE L1 5567 5619 -502 1720 159 0 30 chr13 50513065 50513361 -69231537 + AluJb SINE Alu 5 291 -21 761 281 99 50 chr13 50513361 50513827 -69231071 + L1ME4a LINE L1 5619 6115 -6 1612 156 60 7 chr13 50513846 50514128 -69230770 + AluJo SINE Alu 1 297 -15 349 208 26 0 chr13 50514313 50514390 -69230508 + MIR SINE MIR 90 168 -94 275 307 137 36 chr13 50514702 50515159 -69229739 + L2 LINE L2 2572 3081 -191 23 0 0 0 chr13 50515652 50515675 -69229223 + AT_rich Low_complexity Low_complexity 1 23 0 558 333 78 14 chr13 50516754 50517084 -69227814 + L2 LINE L2 2708 3054 -218 2218 103 3 0 chr13 50517143 50517445 -69227453 - AluSp SINE Alu -10 303 1 1914 119 48 3 chr13 50517447 50517741 -69227157 - AluSx SINE Alu -5 307 1 180 212 0 0 chr13 50518302 50518335 -69226563 + L3 LINE CR1 1219 1251 -326 548 258 90 0 chr13 50519244 50519422 -69225476 - MIR SINE MIR -3 259 66 188 316 44 35 chr13 50520696 50520810 -69224088 - MIR SINE MIR -98 164 50 663 336 37 4 chr13 50521902 50522143 -69222755 - MIR SINE MIR -13 249 1 371 265 53 15 chr13 50522167 50522299 -69222599 - LTR67 LTR ERVL -13 544 408 252 260 0 2 chr13 50522521 50522595 -69222303 - MLT1J LTR MaLR -332 153 44 21 0 0 0 chr13 50523339 50523360 -69221538 + AT_rich Low_complexity Low_complexity 1 21 0 234 298 12 24 chr13 50523563 50523647 -69221251 - LTR67 LTR ERVL -411 146 64 1943 105 40 0 chr13 50523922 50524198 -69220700 + AluSx SINE Alu 8 294 -18 307 289 69 29 chr13 50524362 50524535 -69220363 + MLT1J LTR MaLR 1 180 -331 3728 153 38 31 chr13 50524607 50524904 -69219994 - L1MC1 LINE L1 0 6333 6040 2263 164 36 7 chr13 50524904 50525318 -69219580 - MSTB LTR MaLR 0 426 1 3728 153 38 31 chr13 50525318 50525626 -69219272 - L1MC1 LINE L1 -293 6040 5720 2290 142 25 0 chr13 50525626 50525979 -69218919 - THE1B LTR MaLR -2 362 1 3728 153 38 31 chr13 50525979 50526083 -69218815 - L1MC1 LINE L1 -613 5720 5618 407 283 70 44 chr13 50526099 50526371 -69218527 + MLT1J LTR MaLR 231 509 -2 1861 158 0 44 chr13 50527418 50527734 -69217164 + AluJo SINE Alu 1 302 -10 395 281 52 30 chr13 50527843 50527978 -69216920 + MER63A DNA MER1_type 49 186 -24 4322 83 2 0 chr13 50528068 50528621 -69216277 + MER41A LTR ERV1 1 554 0 232 152 22 0 chr13 50528742 50528788 -69216110 + Tigger8 DNA MER2_type 210 256 -410 576 264 87 109 chr13 50529282 50529941 -69214957 + L1MC/D LINE L1 4036 4657 -1489 2551 66 0 0 chr13 50529941 50530243 -69214655 - AluY SINE Alu -9 302 1 576 264 87 109 chr13 50530243 50530796 -69214102 + L1MC/D LINE L1 4657 5221 -925 285 73 24 0 chr13 50530821 50530862 -69214036 - tRNA-Cys-TGC tRNA tRNA -32 43 2 238 279 139 0 chr13 50531017 50531103 -69213795 + MLT1E3 LTR MaLR 113 210 -414 291 250 12 12 chr13 50531157 50531237 -69213661 + L1MC/D LINE L1 5399 5478 -2330 231 61 0 0 chr13 50531245 50531278 -69213620 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1775 82 0 5 chr13 50531303 50531522 -69213376 + AluSq SINE Alu 12 229 -84 682 319 84 4 chr13 50531523 50531796 -69213102 + L1MC/D LINE L1 5472 5766 -2042 277 263 91 63 chr13 50532089 50532264 -69212634 + Tigger8 DNA MER2_type 482 661 -5 1388 260 64 25 chr13 50532406 50532890 -69212008 + MER69B DNA AcHobo 106 608 -618 2058 160 46 29 chr13 50532892 50533191 -69211707 + MER95 LTR ERV 13 322 -109 2303 115 0 0 chr13 50533191 50533486 -69211412 - AluSx SINE Alu -17 295 1 2058 160 46 29 chr13 50533486 50533598 -69211300 + MER95 LTR ERV 322 431 0 * 2255 207 39 47 chr13 50533598 50533935 -69210963 + MER69B DNA AcHobo 604 935 -1591 2015 126 36 13 chr13 50533935 50534237 -69210661 + AluSx SINE Alu 2 310 -2 2255 207 39 47 chr13 50534237 50534519 -69210379 + MER69B DNA AcHobo 935 1218 -8 2376 101 0 0 chr13 50535180 50535476 -69209422 + AluSx SINE Alu 1 296 -16 1245 301 38 7 chr13 50535585 50536003 -69208895 + LTR16B LTR ERVL 34 464 0 2339 106 0 6 chr13 50536167 50536479 -69208419 - AluSx SINE Alu -2 310 1 651 212 33 78 chr13 50537099 50537421 -69207477 - MLT1J1 LTR MaLR -69 377 75 543 216 36 9 chr13 50537433 50537544 -69207354 - MER81 DNA DNA 0 114 1 1360 148 5 9 chr13 50537769 50537992 -69206906 + L1PA15 LINE L1 5937 6158 -7 2649 51 0 16 chr13 50537992 50538307 -69206591 + AluY SINE Alu 1 310 -1 405 39 0 0 chr13 50538849 50538900 -69205998 + (CA)n Simple_repeat Simple_repeat 2 52 0 212 219 27 27 chr13 50539672 50539745 -69205153 + (CATA)n Simple_repeat Simple_repeat 2 74 0 2423 135 23 18 chr13 50540033 50540417 -69204481 + MLT1B LTR MaLR 1 386 -4 407 259 30 104 chr13 50541066 50541227 -69203671 + MIR SINE MIR 60 205 -57 1633 185 3 7 chr13 50541227 50541519 -69203379 + AluJo SINE Alu 11 301 -11 407 259 30 104 chr13 50541519 50541558 -69203340 + MIR SINE MIR 205 245 -17 2201 196 55 28 chr13 50542091 50542131 -69202767 - MLT2B1 LTR ERVL 0 520 483 572 0 15 0 chr13 50542131 50542199 -69202699 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 213 39 0 0 chr13 50542201 50542227 -69202671 + (CA)n Simple_repeat Simple_repeat 2 27 0 2201 196 55 28 chr13 50542227 50542689 -69202209 - MLT2B1 LTR ERVL -37 483 1 406 314 89 5 chr13 50542869 50543060 -69201838 - MIR SINE MIR -43 219 13 2258 167 44 15 chr13 50544221 50544675 -69200223 - MLT1C LTR MaLR 0 467 1 489 248 105 13 chr13 50544701 50544854 -69200044 - MER5B DNA MER1_type 0 178 12 189 178 0 0 chr13 50547251 50547296 -69197602 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 440 264 24 16 chr13 50547895 50548020 -69196878 + L2 LINE L2 3146 3271 -1 266 264 58 11 chr13 50548115 50548202 -69196696 + MIR SINE MIR 106 196 -66 344 266 48 16 chr13 50548269 50548393 -69196505 + L2 LINE L2 3123 3250 -22 1518 228 115 25 chr13 50549087 50549529 -69195369 + MLT2B1 LTR ERVL 1 534 -20 1997 147 0 10 chr13 50549922 50550247 -69194651 - AluSx SINE Alu 0 312 1 244 290 0 0 chr13 50550271 50550340 -69194558 + MIR SINE MIR 151 219 -43 2173 142 21 0 chr13 50550395 50550732 -69194166 + Tigger3(Golem) DNA MER2_type 1 344 -2685 594 210 48 8 chr13 50550732 50550856 -69194042 + FLAM_A SINE Alu 1 129 -13 5869 113 12 5 chr13 50550877 50551754 -69193144 + Tigger3b DNA MER2_type 345 1228 -3 342 239 0 46 chr13 50551827 50551936 -69192962 - MIR SINE MIR -102 160 57 360 264 45 36 chr13 50552592 50552702 -69192196 - L2 LINE L2 0 3313 3203 882 169 14 0 chr13 50553721 50553869 -69191029 - FRAM SINE Alu -11 165 16 216 0 0 0 chr13 50554814 50554838 -69190060 + (A)n Simple_repeat Simple_repeat 1 24 0 423 263 53 8 chr13 50555460 50555593 -69189305 + MER117 DNA MER1_type 1 139 -58 1068 143 90 97 chr13 50556176 50556455 -69188443 + MLT1A1 LTR MaLR 89 365 0 5836 150 48 4 chr13 50556776 50557869 -69187029 + L1MC2 LINE L1 5195 6334 -10 385 296 65 63 chr13 50557901 50558229 -69186669 + L1M4 LINE L1 4422 4753 -1393 2526 76 0 3 chr13 50558229 50558533 -69186365 + AluSx SINE Alu 1 303 -9 385 296 65 63 chr13 50558533 50558681 -69186217 + L1M4 LINE L1 4753 4899 -1247 * 404 310 113 16 chr13 50558671 50559287 -69185611 + L1P4 LINE L1 5123 5809 -357 2195 105 3 13 chr13 50559739 50560044 -69184854 + AluSx SINE Alu 5 306 -6 311 250 114 0 chr13 50560246 50560334 -69184564 - MIR SINE MIR -78 184 87 666 266 68 14 chr13 50561095 50561317 -69183581 + MIR SINE MIR 14 247 -15 229 282 36 55 chr13 50561851 50561961 -69182937 + L2 LINE L2 3193 3300 -13 879 130 0 0 chr13 50561961 50562107 -69182791 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 231 203 31 31 chr13 50564320 50564384 -69180514 - MIR SINE MIR -168 94 31 219 310 18 18 chr13 50564899 50565012 -69179886 + (CTCA)n Simple_repeat Simple_repeat 2 114 0 875 247 13 17 chr13 50565222 50565453 -69179445 - MIR SINE MIR -25 237 8 198 0 0 0 chr13 50565708 50565730 -69179168 + (A)n Simple_repeat Simple_repeat 1 22 0 451 326 6 6 chr13 50565841 50566016 -69178882 + MIR SINE MIR 64 238 -24 209 189 0 0 chr13 50568214 50568251 -69176647 + (CA)n Simple_repeat Simple_repeat 1 37 0 244 276 103 26 chr13 50568418 50568534 -69176364 + L1ME LINE L1 5636 5760 -361 683 243 122 9 chr13 50568598 50568812 -69176086 - MIR SINE MIR -3 259 22 2089 83 8 8 chr13 50568880 50569146 -69175752 + AluSg SINE Alu 39 304 -6 282 242 15 0 chr13 50569396 50569462 -69175436 + MIR SINE MIR 2 68 -194 458 249 168 6 chr13 50569514 50569687 -69175211 + MIR SINE MIR 48 248 -14 1286 180 66 23 chr13 50571108 50571364 -69173534 + Tigger7 DNA MER2_type 1 267 -466 563 194 0 0 chr13 50571362 50571460 -69173438 + Tigger7 DNA MER2_type 2389 2486 -1 * 241 261 29 0 chr13 50571974 50572043 -69172855 - MIR SINE MIR -179 83 13 25 0 0 0 chr13 50573799 50573824 -69171074 + AT_rich Low_complexity Low_complexity 1 25 0 6998 184 53 26 chr13 50574165 50576617 -69168281 - L1MB7 LINE L1 -19 6165 3659 281 264 96 96 chr13 50576630 50576797 -69168101 + MARNA DNA Mariner 143 309 -277 737 242 36 49 chr13 50576873 50577096 -69167802 - MIR SINE MIR -32 230 11 826 261 73 8 chr13 50577749 50577983 -69166915 + MIR SINE MIR 14 262 0 768 160 0 0 chr13 50578004 50578135 -69166763 + FLAM_A SINE Alu 1 131 -2 988 197 111 0 chr13 50580508 50580706 -69164192 + MER58A DNA MER1_type 1 220 -4 217 341 39 8 chr13 50580825 50580954 -69163944 + MIR SINE MIR 122 254 -8 196 368 47 36 chr13 50582130 50582323 -69162575 - L2 LINE L2 -2 3270 3076 324 269 60 15 chr13 50582470 50582604 -69162294 - MER103 DNA DNA -25 141 2 250 294 178 43 chr13 50583832 50583995 -69160903 + MIR3 SINE MIR 3 187 -21 22 56 0 0 chr13 50584559 50584595 -69160303 + AT_rich Low_complexity Low_complexity 1 36 0 250 289 211 18 chr13 50587406 50587520 -69157378 + L3b LINE CR1 1347 1482 -101 210 162 0 0 chr13 50589627 50589664 -69155234 + A-rich Low_complexity Low_complexity 1 37 0 1661 187 30 18 chr13 50590543 50590880 -69154018 + MER2 DNA MER2_type 1 341 -3 277 277 12 12 chr13 50592097 50592180 -69152718 - MIR SINE MIR -33 229 147 376 357 126 27 chr13 50593681 50593944 -69150954 + L2 LINE L2 317 605 -2709 785 187 7 7 chr13 50593994 50594149 -69150749 - LTR32 LTR ERVL 0 471 317 269 83 0 0 chr13 50594156 50594192 -69150706 - LTR32 LTR ERVL -119 352 317 1960 151 21 18 chr13 50594192 50594530 -69150368 - LTR32 LTR ERVL -119 352 14 413 240 213 7 chr13 50594578 50594728 -69150170 + MER5A DNA MER1_type 9 189 0 1026 336 133 28 chr13 50594859 50596179 -69148719 + L2 LINE L2 884 2342 -972 1002 201 65 99 chr13 50596385 50596878 -69148020 - L1MC5 LINE L1 -307 7654 7179 376 335 78 37 chr13 50596878 50597096 -69147802 + L2 LINE L2 2639 2865 -449 28 0 0 0 chr13 50598479 50598507 -69146391 + AT_rich Low_complexity Low_complexity 1 28 0 2136 97 10 13 chr13 50598598 50598898 -69146000 + AluSx SINE Alu 1 299 -13 306 106 0 0 chr13 50599260 50599307 -69145591 + (TG)n Simple_repeat Simple_repeat 1 47 0 326 200 148 30 chr13 50600010 50600027 -69144871 - L1MA10 LINE L1 -1 6333 6317 1693 223 174 4 chr13 50600027 50600174 -69144724 - L1ME1 LINE L1 -9 6157 6011 2831 228 145 10 chr13 50600174 50601391 -69143507 - L1MA10 LINE L1 -199 5990 4603 195 302 0 0 chr13 50601516 50601559 -69143339 + MIR SINE MIR 111 153 -55 26 30 0 0 chr13 50602059 50602092 -69142806 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr13 50602221 50602245 -69142653 + AT_rich Low_complexity Low_complexity 1 24 0 705 176 13 75 chr13 50603487 50603646 -69141252 + MIR SINE MIR 64 212 -50 184 368 66 0 chr13 50603912 50603988 -69140910 + MIR SINE MIR 20 100 -162 184 237 0 0 chr13 50603992 50604030 -69140868 + MIR SINE MIR 168 205 -57 1770 151 74 19 chr13 50604469 50604793 -69140105 - MER2 DNA MER2_type -1 343 2 697 251 104 22 chr13 50604822 50605053 -69139845 + MIR SINE MIR 3 252 -10 2405 56 7 13 chr13 50605224 50605530 -69139368 - AluSq SINE Alu -9 304 1 25 0 0 0 chr13 50606412 50606437 -69138461 + AT_rich Low_complexity Low_complexity 1 25 0 2094 105 0 14 chr13 50606448 50606734 -69138164 + AluSx SINE Alu 1 282 -30 207 326 86 29 chr13 50608121 50608296 -69136602 + L2 LINE L2 2201 2385 -929 221 363 140 38 chr13 50608480 50608772 -69136126 + L2 LINE L2 2563 2884 -430 403 277 121 0 chr13 50609170 50609311 -69135587 - MIR SINE MIR -56 206 49 26 64 0 0 chr13 50611247 50611294 -69133604 + AT_rich Low_complexity Low_complexity 1 47 0 231 380 83 9 chr13 50611505 50611613 -69133285 + L2 LINE L2 3180 3295 -18 23 0 0 0 chr13 50611787 50611810 -69133088 + AT_rich Low_complexity Low_complexity 1 23 0 2295 101 3 0 chr13 50612037 50612345 -69132553 - AluSp SINE Alu -3 310 2 219 69 0 0 chr13 50613106 50613135 -69131763 + (GAA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr13 50613395 50613430 -69131468 + AT_rich Low_complexity Low_complexity 1 35 0 1166 191 59 7 chr13 50613832 50614136 -69130762 + MER33 DNA MER1_type 5 324 0 734 255 112 5 chr13 50614456 50614652 -69130246 - MIR SINE MIR -3 259 43 21 36 0 0 chr13 50615080 50615108 -69129790 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 50615481 50615510 -69129388 + AT_rich Low_complexity Low_complexity 1 29 0 672 314 193 19 chr13 50615510 50616045 -69128853 + L2 LINE L2 2298 2925 -389 608 289 156 68 chr13 50616048 50616550 -69128348 + L2 LINE L2 2751 3299 -14 282 249 42 90 chr13 50616693 50616728 -69128170 + L1ME4a LINE L1 5942 5977 -144 2382 89 0 0 chr13 50616728 50617031 -69127867 - AluSx SINE Alu -9 303 1 282 249 42 90 chr13 50617031 50617184 -69127714 + L1ME4a LINE L1 5977 6121 0 277 305 139 60 chr13 50617190 50617492 -69127406 + L3b LINE CR1 1245 1570 -13 290 297 63 27 chr13 50618269 50618380 -69126518 + L2 LINE L2 3190 3304 -9 216 0 0 0 chr13 50619468 50619492 -69125406 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1866 118 4 0 chr13 50619494 50619748 -69125150 - AluSx SINE Alu -55 257 3 652 227 30 78 chr13 50620236 50620505 -69124393 + L1MC5 LINE L1 7268 7523 -438 228 67 0 0 chr13 50621469 50621499 -69123399 + (CA)n Simple_repeat Simple_repeat 1 30 0 780 287 92 20 chr13 50622018 50622561 -69122337 + L1ME3A LINE L1 5292 5873 -297 334 333 0 0 chr13 50622569 50622686 -69122212 - L1ME3A LINE L1 -18 6152 6036 440 238 131 6 chr13 50622704 50622864 -69122034 - L1ME3A LINE L1 -217 5953 5774 1157 188 38 0 chr13 50622866 50623079 -69121819 - AluJo SINE Alu -18 294 74 1475 228 89 14 chr13 50623098 50623356 -69121542 - L1ME3A LINE L1 -440 5730 5424 276 77 0 0 chr13 50623356 50623395 -69121503 + (TG)n Simple_repeat Simple_repeat 2 40 0 1475 228 89 14 chr13 50623395 50623575 -69121323 - L1ME3A LINE L1 -746 5424 5259 2014 104 16 39 chr13 50623599 50623908 -69120990 + MER1B DNA MER1_type 38 339 0 515 286 174 19 chr13 50623908 50624282 -69120616 - L1ME3A LINE L1 -895 5251 4820 196 381 48 0 chr13 50624893 50624998 -69119900 - L2 LINE L2 -4 3268 3159 726 213 84 36 chr13 50625240 50625489 -69119409 - MIR SINE MIR 0 262 2 26 64 0 0 chr13 50625585 50625632 -69119266 + AT_rich Low_complexity Low_complexity 1 47 0 494 246 98 0 chr13 50625815 50625937 -69118961 - MIR SINE MIR 0 262 129 2226 110 3 0 chr13 50626955 50627265 -69117633 + AluY SINE Alu 1 311 0 1633 162 29 16 chr13 50627593 50627717 -69117181 + AluJo SINE Alu 1 122 -190 369 0 0 0 chr13 50627717 50627758 -69117140 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr13 50627757 50627778 -69117120 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 1633 162 29 16 chr13 50627758 50627961 -69116937 + AluJo SINE Alu 122 312 0 199 200 0 0 chr13 50628695 50628730 -69116168 - L2 LINE L2 -260 3053 3019 247 313 28 27 chr13 50629276 50629473 -69115425 + MLT1H1 LTR MaLR 185 370 -185 422 177 51 0 chr13 50629500 50629579 -69115319 + MLT1H1 LTR MaLR 463 545 -10 580 299 136 71 chr13 50629589 50630442 -69114456 + L2 LINE L2 1911 2873 -399 1776 78 0 4 chr13 50630442 50630673 -69114225 - MER30 DNA MER1_type 0 230 1 580 299 136 71 chr13 50630673 50630848 -69114050 + L2 LINE L2 2873 3035 -237 1910 119 72 0 chr13 50631408 50631686 -69113212 + AluSx SINE Alu 1 298 -14 2390 81 0 3 chr13 50631800 50632096 -69112802 - AluSq SINE Alu -16 297 3 227 228 76 43 chr13 50632412 50632504 -69112394 - MIR SINE MIR -1 261 167 382 223 68 10 chr13 50632725 50632828 -69112070 - HsTC2 DNA Tc2 -1008 890 782 573 93 0 0 chr13 50632842 50632972 -69111926 + AluSg/x SINE Alu 209 338 0 268 377 14 7 chr13 50633100 50633246 -69111652 - HsTC2 DNA Tc2 -1261 637 491 3260 220 93 29 chr13 50633381 50634583 -69110315 + L1ME1 LINE L1 4078 5202 -964 2150 105 0 3 chr13 50634583 50634910 -69109988 + AluSx SINE Alu 1 326 0 3260 220 93 29 chr13 50634910 50634925 -69109973 + L1ME1 LINE L1 5202 5215 -951 2265 111 3 0 chr13 50634925 50635232 -69109666 + AluSx SINE Alu 1 308 -4 3260 220 93 29 chr13 50635232 50635965 -69108933 + L1ME1 LINE L1 5215 6161 -5 444 220 139 17 chr13 50686771 50686944 -69057954 - LTR33 LTR ERVL 0 521 328 268 174 101 0 chr13 50687131 50687200 -69057698 - LTR33 LTR ERVL -444 77 2 324 22 22 0 chr13 50687556 50687602 -69057296 - MADE1 DNA Mariner 0 80 34 2568 7 0 0 chr13 50688238 50688521 -69056377 + AluYb8 SINE Alu 1 283 -35 2080 118 4 0 chr13 50688659 50688939 -69055959 - AluSc SINE Alu -15 294 14 2379 70 0 0 chr13 50689242 50689551 -69055347 + AluY SINE Alu 1 309 0 649 203 71 78 chr13 50689871 50690152 -69054746 - MLT1A1 LTR MaLR 0 365 87 399 228 43 0 chr13 50690177 50690269 -69054629 - MLT1J LTR MaLR -105 406 311 * 502 168 11 0 chr13 50690267 50690362 -69054536 - MLT1A1 LTR MaLR -298 98 3 266 338 0 0 chr13 50690419 50690487 -69054411 + MIR SINE MIR 57 124 -84 1589 194 8 26 chr13 50690816 50691167 -69053731 + L1M3 LINE L1 5440 5784 -399 2427 78 6 6 chr13 50691184 50691519 -69053379 - L1PA10 LINE L1 0 6168 5834 649 91 0 0 chr13 50691519 50691618 -69053280 - L1PA10 LINE L1 -612 5562 5464 2816 170 33 2 chr13 50691622 50692133 -69052765 - MER44D DNA MER2_type -23 582 1 408 266 196 5 chr13 50692613 50692827 -69052071 + MLT1K LTR MaLR 324 578 -10 353 256 240 0 chr13 50693059 50693180 -69051718 - MIR3 SINE MIR -11 197 48 1165 206 125 22 chr13 50693321 50693681 -69051217 + MLT2C1 LTR ERVL 1 397 0 31 58 0 0 chr13 50693738 50693790 -69051108 + AT_rich Low_complexity Low_complexity 1 52 0 342 311 42 17 chr13 50694569 50694688 -69050210 - MER5B DNA MER1_type -2 176 55 550 255 106 16 chr13 50694748 50694936 -69049962 - L3 LINE CR1 -2 1575 1371 630 279 119 10 chr13 50697213 50697414 -69047484 - MIR SINE MIR -12 250 28 398 201 173 36 chr13 50697419 50697558 -69047340 - L2 LINE L2 -1 3312 3155 375 264 78 82 chr13 50697700 50697931 -69046967 - L2 LINE L2 -199 3073 2844 1486 177 90 153 chr13 50698248 50698825 -69046073 - MLT1F LTR MaLR 0 542 2 231 239 14 14 chr13 50698916 50698987 -69045911 - LTR33 LTR ERVL -69 452 382 873 228 50 15 chr13 50699052 50699254 -69045644 - MER63A DNA MER1_type 0 210 2 261 0 0 0 chr13 50699873 50699902 -69044996 + (T)n Simple_repeat Simple_repeat 1 29 0 1872 107 61 0 chr13 50700494 50700756 -69044142 + AluSx SINE Alu 1 278 -34 718 11 0 21 chr13 50700757 50700850 -69044048 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 229 370 161 0 chr13 50701433 50701625 -69043273 + L2 LINE L2 2165 2387 -927 274 263 121 0 chr13 50702128 50702227 -69042671 - MIR SINE MIR 0 262 152 339 244 12 0 chr13 50702227 50702313 -69042585 - MER46C DNA MER2_type -1 337 251 303 162 0 95 chr13 50702316 50702390 -69042508 + MIR SINE MIR 114 180 -82 195 42 0 0 chr13 50702582 50702606 -69042292 + (T)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr13 50703108 50703137 -69041761 + AT_rich Low_complexity Low_complexity 1 29 0 321 347 13 38 chr13 50703225 50703418 -69041480 - MIR SINE MIR -53 209 23 4473 172 57 4 chr13 50703525 50704763 -69040135 + L1MB2 LINE L1 4874 6171 0 216 0 0 0 chr13 50705444 50705468 -69039430 + (A)n Simple_repeat Simple_repeat 1 24 0 2194 97 3 0 chr13 50705487 50705777 -69039121 + AluSp SINE Alu 1 291 -22 267 31 0 0 chr13 50709429 50709461 -69035437 + (CCG)n Simple_repeat Simple_repeat 1 32 0 188 132 0 26 chr13 50709635 50709673 -69035225 + (GGGAA)n Simple_repeat Simple_repeat 2 38 0 442 275 144 53 chr13 50709828 50710112 -69034786 + L1M2 LINE L1 772 1081 -5768 36 23 0 0 chr13 50711039 50711082 -69033816 + GC_rich Low_complexity Low_complexity 1 43 0 40 21 0 0 chr13 50711321 50711368 -69033530 + GC_rich Low_complexity Low_complexity 1 47 0 2042 159 72 0 chr13 50713096 50713455 -69031443 - MSTB LTR MaLR -41 385 1 2405 184 16 11 chr13 50713455 50713907 -69030991 - MLT2B2 LTR ERVL -61 454 1 15552 101 17 17 chr13 50714405 50716873 -69028025 + L1P LINE L1 442 2909 -3237 486 221 25 25 chr13 50717800 50717922 -69026976 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 3347 133 93 10 chr13 50717905 50717969 -69026929 + Tigger3(Golem) DNA MER2_type 2281 2338 -690 1956 82 26 65 chr13 50717969 50718275 -69026623 + AluY SINE Alu 1 294 -17 3347 133 93 10 chr13 50718275 50718901 -69025997 + Tigger3(Golem) DNA MER2_type 2338 3028 0 546 278 91 37 chr13 50718996 50719237 -69025661 - MIR SINE MIR -1 261 8 278 295 84 0 chr13 50719371 50719466 -69025432 - MIR SINE MIR -75 187 85 1990 140 0 0 chr13 50719836 50720121 -69024777 - AluSx SINE Alu -16 296 12 2155 88 37 30 chr13 50720153 50720449 -69024449 - AluSq SINE Alu -15 298 1 183 270 0 0 chr13 50720522 50720559 -69024339 + L2 LINE L2 3020 3056 -216 1791 138 90 16 chr13 50720571 50720883 -69024015 + MER1B DNA MER1_type 3 337 0 22 35 0 0 chr13 50721103 50721132 -69023766 + AT_rich Low_complexity Low_complexity 1 29 0 253 312 75 0 chr13 50721211 50721304 -69023594 + MIR3 SINE MIR 98 197 -11 629 220 8 0 chr13 50721589 50721707 -69023191 + FLAM_A SINE Alu 1 119 -14 676 156 65 65 chr13 50722083 50722266 -69022632 - AluSg/x SINE Alu 0 314 132 250 302 101 36 chr13 50722559 50722698 -69022200 - MIR SINE MIR -71 191 44 996 182 6 0 chr13 50723085 50723255 -69021643 - FRAM SINE Alu -6 170 1 1891 177 3 0 chr13 50724090 50724384 -69020514 + 7SLRNA srpRNA srpRNA 3 297 -23 218 186 51 51 chr13 50724386 50724445 -69020453 - MIR SINE MIR -61 147 89 1557 88 77 25 chr13 50724971 50725256 -69019642 - L1MA5A LINE L1 0 6297 5998 181 250 47 47 chr13 50725723 50725787 -69019111 + L2 LINE L2 3250 3313 0 264 30 0 0 chr13 50727504 50727537 -69017361 + (CA)n Simple_repeat Simple_repeat 2 34 0 290 261 26 83 chr13 50727591 50727794 -69017104 + MER20B DNA MER1_type 4 203 -16 671 228 123 33 chr13 50727889 50728100 -69016798 + MIR SINE MIR 28 257 -5 287 314 59 25 chr13 50728757 50728993 -69015905 - L1ME LINE L1 -302 5819 5576 1239 165 4 22 chr13 50729466 50729696 -69015202 - AluJb SINE Alu -1 311 86 2395 59 0 3 chr13 50729907 50730197 -69014701 + L1P2 LINE L1 5495 5783 -371 21743 67 2 0 chr13 50730207 50732927 -69011971 + L1P LINE L1 9 2734 -3412 22952 53 13 5 chr13 50733027 50735942 -69008956 - L1P LINE L1 -2954 3192 253 446 270 44 44 chr13 50736086 50736245 -69008653 + L2 LINE L2 3107 3265 -48 259 323 34 64 chr13 50736390 50736625 -69008273 - L2 LINE L2 -218 3054 2827 30 27 0 0 chr13 50736881 50736918 -69007980 + AT_rich Low_complexity Low_complexity 1 37 0 37 0 0 0 chr13 50737104 50737141 -69007757 + AT_rich Low_complexity Low_complexity 1 37 0 369 67 0 33 chr13 50737142 50737202 -69007696 - L1PB1 LINE L1 -3 6148 6091 * 17364 34 9 1 chr13 50737197 50739953 -69004945 - L1PA5 LINE L1 0 6154 3381 7629 168 59 103 chr13 50740217 50742053 -69002845 - MER52A LTR ERV1 0 1755 1 396 350 6 28 chr13 50742430 50742610 -69002288 - MER5B DNA MER1_type 0 178 3 289 268 10 62 chr13 50743917 50744014 -69000884 - L2 LINE L2 -2 3270 3179 315 206 52 41 chr13 50744101 50744198 -69000700 - HsTC2a DNA Tc2 0 742 645 1691 221 64 20 chr13 50744205 50744612 -69000286 - HsTC2a DNA Tc2 -316 428 4 1342 216 43 7 chr13 50744913 50745191 -68999707 + MSTB LTR MaLR 1 288 -138 701 89 0 122 chr13 50746110 50746161 -68998737 + MSTB LTR MaLR 325 354 -78 2329 104 3 0 chr13 50746161 50746470 -68998428 - AluSx SINE Alu -2 310 1 701 89 0 122 chr13 50746470 50746541 -68998357 + MSTB LTR MaLR 354 432 0 247 339 61 48 chr13 50746545 50746640 -68998258 - L2 LINE L2 -594 2720 2628 1816 159 20 3 chr13 50746640 50746935 -68997963 - AluSx SINE Alu -10 302 3 247 339 61 48 chr13 50746935 50747069 -68997829 - L2 LINE L2 -686 2628 2488 636 283 108 21 chr13 50747198 50747484 -68997414 - L2 LINE L2 -2 3311 3001 1815 164 76 48 chr13 50747532 50747840 -68997058 + MLT1A1 LTR MaLR 1 299 -66 216 0 0 0 chr13 50747840 50747864 -68997034 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2043 117 0 7 chr13 50747865 50748147 -68996751 - AluSx SINE Alu -32 280 1 1815 164 76 48 chr13 50748147 50748190 -68996708 + MLT1A1 LTR MaLR 298 364 -1 278 270 9 81 chr13 50748409 50748520 -68996378 - L2 LINE L2 -2 3270 3168 836 134 23 148 chr13 50748523 50748739 -68996159 - MER53 DNA DNA 0 189 1 999 239 151 65 chr13 50749567 50749763 -68995135 + L2 LINE L2 2474 2652 -661 670 104 9 264 chr13 50749763 50749983 -68994915 - FRAM SINE Alu 0 166 3 999 239 151 65 chr13 50749983 50750478 -68994420 + L2 LINE L2 2652 3309 -4 351 274 85 90 chr13 50750711 50750799 -68994099 + MIR SINE MIR 46 133 -129 1719 173 0 13 chr13 50750799 50751105 -68993793 - AluJo SINE Alu -10 302 1 351 274 85 90 chr13 50751105 50751217 -68993681 + MIR SINE MIR 133 245 -17 2033 136 46 60 chr13 50751508 50751876 -68993022 + MLT2D LTR ERVL 4 366 -48 22244 84 3 4 chr13 50752173 50755829 -68989069 - L1PA7 LINE L1 -5 6149 2480 1982 218 84 89 chr13 50755932 50756517 -68988381 - L1ME LINE L1 -386 5780 5191 2447 71 10 0 chr13 50756517 50756813 -68988085 + AluY SINE Alu 1 299 -12 1982 218 84 89 chr13 50756813 50757387 -68987511 - L1ME LINE L1 -975 5191 4616 635 205 83 79 chr13 50757397 50757626 -68987272 - L1ME LINE L1 -1619 4527 4298 616 256 0 16 chr13 50757628 50757753 -68987145 - FLAM_A SINE Alu -14 128 6 1003 228 133 78 chr13 50757779 50758289 -68986609 - L1ME LINE L1 -1869 4277 3740 1280 236 8 61 chr13 50758301 50758662 -68986236 - MLT2B1 LTR ERVL -178 342 1 248 316 43 17 chr13 50758679 50758796 -68986102 - MIR3 SINE MIR -6 202 83 22 70 0 0 chr13 50758805 50758848 -68986050 + AT_rich Low_complexity Low_complexity 1 43 0 294 222 14 14 chr13 50758896 50758968 -68985930 + L1MB7 LINE L1 6104 6175 -9 2852 260 58 39 chr13 50759082 50759724 -68985174 + L2 LINE L2 2109 2775 -538 2261 84 10 17 chr13 50759724 50760021 -68984877 + AluSq SINE Alu 3 297 -16 2852 260 58 39 chr13 50760021 50760395 -68984503 + L2 LINE L2 2775 3140 -173 395 236 56 83 chr13 50760783 50760927 -68983971 + MER5B DNA MER1_type 36 175 -3 300 246 14 0 chr13 50761660 50761729 -68983169 - MIR SINE MIR -76 132 63 1456 201 32 29 chr13 50762330 50762678 -68982220 + MLT1A2 LTR MaLR 1 349 -25 898 269 170 17 chr13 50762941 50763353 -68981545 - L2 LINE L2 0 3313 2839 1996 179 60 54 chr13 50763500 50763963 -68980935 - MLT1C LTR MaLR 0 467 2 245 222 0 28 chr13 50765106 50765178 -68979720 - L1MC4a LINE L1 -1861 5947 5878 * 548 173 30 147 chr13 50765173 50765248 -68979650 - L1MB8 LINE L1 -1 6177 6095 2195 112 3 3 chr13 50765248 50765543 -68979355 - AluSc SINE Alu -14 295 1 1759 79 3 201 chr13 50765548 50765925 -68978973 - AluSx SINE Alu 0 307 1 548 173 30 147 chr13 50765925 50766073 -68978825 - L1MB8 LINE L1 -87 6091 5974 624 152 0 0 chr13 50766941 50767033 -68977865 - Tigger7 DNA MER2_type 0 2491 2400 * 2720 175 39 16 chr13 50767032 50767541 -68977357 - Tigger7 DNA MER2_type -212 521 1 206 276 26 40 chr13 50767667 50767743 -68977155 - L2 LINE L2 -265 3007 2933 292 170 75 0 chr13 50767878 50767931 -68976967 - MLT2B1 LTR ERVL 0 520 464 1701 147 99 6 chr13 50767935 50768248 -68976650 - MER7A DNA MER2_type -6 340 1 22 56 0 0 chr13 50768507 50768543 -68976355 + AT_rich Low_complexity Low_complexity 1 36 0 1928 138 0 14 chr13 50770197 50770494 -68974404 - AluSx SINE Alu -19 293 1 492 97 75 43 chr13 50771193 50771286 -68973612 - L1MB2 LINE L1 0 6171 6076 26 30 0 0 chr13 50771299 50771332 -68973566 + AT_rich Low_complexity Low_complexity 1 33 0 371 325 38 25 chr13 50771499 50771656 -68973242 - L2 LINE L2 -208 3064 2906 21 36 0 0 chr13 50771664 50771692 -68973206 + AT_rich Low_complexity Low_complexity 1 28 0 568 216 10 0 chr13 50772880 50772977 -68971921 - AluJ/FLAM SINE Alu -213 99 2 581 274 83 98 chr13 50774861 50775137 -68969761 - MLT1J LTR MaLR -46 465 197 2035 111 18 4 chr13 50775137 50775417 -68969481 + AluSq SINE Alu 13 296 -17 581 274 83 98 chr13 50775417 50775611 -68969287 - MLT1J LTR MaLR -314 197 2 3622 138 69 0 chr13 50776015 50776625 -68968273 + Tigger3b DNA MER2_type 10 661 -570 1896 145 16 26 chr13 50776626 50776937 -68967961 - AluJb SINE Alu -3 309 2 353 45 0 0 chr13 50776937 50776981 -68967917 + (TG)n Simple_repeat Simple_repeat 1 44 0 15710 32 1 1 chr13 50777121 50778156 -68966742 + L1PA4 LINE L1 3597 4631 -1524 2301 87 0 31 chr13 50778156 50778477 -68966421 + AluY SINE Alu 1 311 0 15710 32 1 1 chr13 50778477 50779995 -68964903 + L1PA4 LINE L1 4630 6153 -2 1057 200 167 10 chr13 50780002 50780392 -68964506 + Charlie2a DNA MER1_type 1215 1665 -1197 1635 202 20 7 chr13 50780395 50780687 -68964211 + AluJo SINE Alu 2 297 -15 3046 152 19 10 chr13 50780690 50780731 -68964167 - L1M4 LINE L1 -360 5818 5779 2122 126 10 3 chr13 50780731 50781041 -68963857 - AluSq SINE Alu -1 312 1 3046 152 19 10 chr13 50781041 50781601 -68963297 - L1M4 LINE L1 -399 5779 5215 1238 171 60 109 chr13 50781601 50781653 -68963245 + Charlie2a DNA MER1_type 2004 2057 -805 2122 132 6 0 chr13 50781653 50781964 -68962934 + AluSq SINE Alu 1 313 0 1238 171 60 109 chr13 50781964 50782189 -68962709 + Charlie2a DNA MER1_type 2057 2245 -617 1916 125 50 16 chr13 50782189 50782492 -68962406 + AluSq SINE Alu 1 313 0 1238 171 60 109 chr13 50782492 50782734 -68962164 + Charlie2a DNA MER1_type 2245 2498 -364 756 299 38 44 chr13 50783424 50783681 -68961217 - L2 LINE L2 -2 3311 3055 1985 136 17 13 chr13 50783681 50783983 -68960915 - AluSx SINE Alu -9 303 1 756 299 38 44 chr13 50783983 50784090 -68960808 - L2 LINE L2 -258 3055 2949 1033 254 145 70 chr13 50784151 50784648 -68960250 - L2 LINE L2 -537 2777 2244 671 264 345 53 chr13 50784756 50784822 -68960076 - L2 LINE L2 -1532 1782 1736 1764 166 7 10 chr13 50784822 50785124 -68959774 - AluJb SINE Alu -8 304 4 671 264 345 53 chr13 50785124 50785410 -68959488 - L2 LINE L2 -1578 1736 1535 2398 86 3 0 chr13 50785410 50785713 -68959185 - AluSx SINE Alu -8 304 1 671 264 345 53 chr13 50785713 50785985 -68958913 - L2 LINE L2 -1779 1535 974 219 237 34 0 chr13 50786011 50786070 -68958828 - MIR SINE MIR -22 240 180 233 180 100 110 chr13 50786261 50786361 -68958537 + MLT1K LTR MaLR 490 588 0 381 287 82 62 chr13 50787537 50787781 -68957117 - MIR SINE MIR -8 254 6 305 240 199 14 chr13 50787983 50788123 -68956775 - MIR SINE MIR -78 130 3 1154 128 51 36 chr13 50788235 50788431 -68956467 + MER3 DNA MER1_type 7 205 -4 699 253 68 14 chr13 50788859 50789080 -68955818 + Charlie8 DNA MER1_type 54 286 -2131 295 217 0 0 chr13 50789112 50789172 -68955726 + Charlie8 DNA MER1_type 2357 2416 -1 324 324 9 0 chr13 50789198 50789303 -68955595 - MIR SINE MIR -56 206 101 1927 103 4 15 chr13 50790258 50790520 -68954378 - AluSx SINE Alu -53 259 1 25 0 0 0 chr13 50790531 50790556 -68954342 + AT_rich Low_complexity Low_complexity 1 25 0 2442 56 7 13 chr13 50791314 50791620 -68953278 + AluSq SINE Alu 1 304 -9 696 251 104 22 chr13 50791791 50792022 -68952876 - MIR SINE MIR -10 252 3 1771 151 74 19 chr13 50792051 50792375 -68952523 + MER2 DNA MER2_type 2 343 -1 184 325 44 6 chr13 50792814 50792932 -68951966 - MIR SINE MIR -57 205 20 703 176 13 75 chr13 50793198 50793357 -68951541 - MIR SINE MIR -50 212 64 211 326 86 29 chr13 50795436 50795611 -68949287 + L2 LINE L2 2201 2385 -929 220 363 140 38 chr13 50795795 50796087 -68948811 + L2 LINE L2 2563 2884 -430 396 277 121 0 chr13 50796485 50796626 -68948272 - MIR SINE MIR -56 206 49 26 64 0 0 chr13 50798562 50798609 -68946289 + AT_rich Low_complexity Low_complexity 1 47 0 222 380 83 9 chr13 50798820 50798928 -68945970 + L2 LINE L2 3180 3295 -18 23 0 0 0 chr13 50799102 50799125 -68945773 + AT_rich Low_complexity Low_complexity 1 23 0 2329 101 3 0 chr13 50799352 50799660 -68945238 - AluSp SINE Alu -3 310 2 219 69 0 0 chr13 50800421 50800450 -68944448 + (GAA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr13 50800710 50800745 -68944153 + AT_rich Low_complexity Low_complexity 1 35 0 1137 191 59 7 chr13 50801147 50801451 -68943447 + MER33 DNA MER1_type 5 324 0 728 255 112 5 chr13 50801771 50801967 -68942931 - MIR SINE MIR -3 259 43 21 36 0 0 chr13 50802395 50802423 -68942475 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 50802796 50802825 -68942073 + AT_rich Low_complexity Low_complexity 1 29 0 684 314 193 19 chr13 50802825 50803360 -68941538 + L2 LINE L2 2298 2925 -389 608 289 156 68 chr13 50803363 50803865 -68941033 + L2 LINE L2 2751 3299 -14 261 249 42 90 chr13 50804008 50804043 -68940855 + L1ME4a LINE L1 5942 5977 -144 2417 89 0 0 chr13 50804043 50804346 -68940552 - AluSx SINE Alu -9 303 1 261 249 42 90 chr13 50804346 50804499 -68940399 + L1ME4a LINE L1 5977 6121 0 257 305 89 64 chr13 50804505 50804708 -68940190 + L3b LINE CR1 1245 1452 -131 293 297 63 27 chr13 50805584 50805695 -68939203 + L2 LINE L2 3190 3304 -9 216 0 0 0 chr13 50806783 50806807 -68938091 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1896 118 4 0 chr13 50806809 50807063 -68937835 - AluSx SINE Alu -55 257 3 638 227 30 78 chr13 50807551 50807820 -68937078 + L1MC5 LINE L1 7268 7523 -438 228 67 0 0 chr13 50808784 50808814 -68936084 + (CA)n Simple_repeat Simple_repeat 1 30 0 738 287 92 20 chr13 50809333 50809876 -68935022 + L1ME3A LINE L1 5292 5873 -297 324 333 0 0 chr13 50809884 50810001 -68934897 - L1ME3A LINE L1 -18 6152 6036 428 238 131 6 chr13 50810019 50810179 -68934719 - L1ME3A LINE L1 -217 5953 5774 1173 188 38 0 chr13 50810181 50810394 -68934504 - AluJo SINE Alu -18 294 74 1451 228 89 14 chr13 50810413 50810671 -68934227 - L1ME3A LINE L1 -440 5730 5424 276 77 0 0 chr13 50810671 50810710 -68934188 + (TG)n Simple_repeat Simple_repeat 2 40 0 1451 228 89 14 chr13 50810710 50810890 -68934008 - L1ME3A LINE L1 -746 5424 5259 2042 104 16 39 chr13 50810914 50811223 -68933675 + MER1B DNA MER1_type 38 339 0 486 286 174 19 chr13 50811223 50811597 -68933301 - L1ME3A LINE L1 -895 5251 4820 192 381 48 0 chr13 50812208 50812313 -68932585 - L2 LINE L2 -4 3268 3159 724 213 84 36 chr13 50812555 50812804 -68932094 - MIR SINE MIR 0 262 2 26 64 0 0 chr13 50812900 50812947 -68931951 + AT_rich Low_complexity Low_complexity 1 47 0 492 246 98 0 chr13 50813130 50813252 -68931646 - MIR SINE MIR 0 262 129 2256 110 3 0 chr13 50814270 50814580 -68930318 + AluY SINE Alu 1 311 0 1663 162 29 16 chr13 50814908 50815032 -68929866 + AluJo SINE Alu 1 122 -190 369 0 0 0 chr13 50815032 50815073 -68929825 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr13 50815072 50815093 -68929805 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 1663 162 29 16 chr13 50815073 50815276 -68929622 + AluJo SINE Alu 122 312 0 199 200 0 0 chr13 50816010 50816045 -68928853 - L2 LINE L2 -260 3053 3019 247 313 28 27 chr13 50816591 50816788 -68928110 + MLT1H1 LTR MaLR 185 370 -185 422 177 51 0 chr13 50816815 50816894 -68928004 + MLT1H1 LTR MaLR 463 545 -10 580 299 136 71 chr13 50816904 50817757 -68927141 + L2 LINE L2 1911 2873 -399 1776 78 0 4 chr13 50817757 50817988 -68926910 - MER30 DNA MER1_type 0 230 1 580 299 136 71 chr13 50817988 50818163 -68926735 + L2 LINE L2 2873 3035 -237 1910 119 72 0 chr13 50818723 50819001 -68925897 + AluSx SINE Alu 1 298 -14 2316 91 0 3 chr13 50819160 50819456 -68925442 - AluSq SINE Alu -16 297 3 227 228 76 43 chr13 50819772 50819864 -68925034 - MIR SINE MIR -1 261 167 382 223 68 10 chr13 50820085 50820188 -68924710 - HsTC2 DNA Tc2 -1008 890 782 573 93 0 0 chr13 50820202 50820332 -68924566 + AluSg/x SINE Alu 209 338 0 268 377 14 7 chr13 50820460 50820606 -68924292 - HsTC2 DNA Tc2 -1261 637 491 3260 220 93 29 chr13 50820741 50821943 -68922955 + L1ME1 LINE L1 4078 5202 -964 2150 105 0 3 chr13 50821943 50822270 -68922628 + AluSx SINE Alu 1 326 0 3260 220 93 29 chr13 50822270 50822285 -68922613 + L1ME1 LINE L1 5202 5215 -951 2265 111 3 0 chr13 50822285 50822592 -68922306 + AluSx SINE Alu 1 308 -4 3260 220 93 29 chr13 50822592 50823325 -68921573 + L1ME1 LINE L1 5215 6161 -5 433 249 126 1 chr13 50824461 50824604 -68920294 - MIR SINE MIR -62 146 39 626 249 105 24 chr13 50824692 50824901 -68919997 + L1MC5 LINE L1 6614 6839 -1122 402 293 122 32 chr13 50824923 50825169 -68919729 + MLT1J LTR MaLR 12 279 -232 333 0 0 0 chr13 50825847 50825884 -68919014 + (CA)n Simple_repeat Simple_repeat 2 38 0 379 253 36 0 chr13 50826201 50826339 -68918559 - L1MD3 LINE L1 -2 8035 7900 2372 119 5 30 chr13 50826362 50826733 -68918165 + THE1B LTR MaLR 1 362 -2 22 0 0 0 chr13 50826736 50826758 -68918140 + AT_rich Low_complexity Low_complexity 1 22 0 4250 162 58 10 chr13 50827323 50828460 -68916438 - L1MB7 LINE L1 -92 6092 4901 304 135 0 19 chr13 50828868 50828920 -68915978 + L2 LINE L2 3258 3308 -5 229 143 0 0 chr13 50829168 50829203 -68915695 + Alu SINE Alu 256 290 -12 1138 168 245 7 chr13 50829488 50829798 -68915100 - L1MB8 LINE L1 0 6178 5795 985 215 27 9 chr13 50830566 50830785 -68914113 + MER58A DNA MER1_type 1 223 -1 306 155 62 70 chr13 50830852 50830981 -68913917 + Charlie7 DNA MER1_type 2444 2571 -41 21 36 0 0 chr13 50830969 50830997 -68913901 + AT_rich Low_complexity Low_complexity 1 28 0 * 24 0 0 0 chr13 50831424 50831448 -68913450 + AT_rich Low_complexity Low_complexity 1 24 0 368 311 88 7 chr13 50833165 50833313 -68911585 + L2 LINE L2 2597 2756 -558 210 71 0 0 chr13 50833917 50833945 -68910953 + (TG)n Simple_repeat Simple_repeat 2 29 0 284 284 134 8 chr13 50834213 50834340 -68910558 - L3b LINE CR1 -85 1498 1356 548 305 17 28 chr13 50834472 50834649 -68910249 + MER5B DNA MER1_type 4 178 0 219 340 52 21 chr13 50837057 50837154 -68907744 + L2 LINE L2 3141 3240 -32 339 358 58 0 chr13 50837348 50837468 -68907430 + MIR3 SINE MIR 50 176 -32 22 0 0 0 chr13 50838658 50838680 -68906218 + AT_rich Low_complexity Low_complexity 1 22 0 2423 85 3 7 chr13 50838756 50839063 -68905835 - AluSg SINE Alu -4 306 1 355 339 58 17 chr13 50839430 50839604 -68905294 - MIR SINE MIR -48 214 34 2248 119 7 0 chr13 50839923 50840226 -68904672 + AluSx SINE Alu 1 305 -7 20742 57 8 0 chr13 50840332 50843813 -68901085 + L1PA6 LINE L1 2660 6153 -1 1940 160 0 0 chr13 50844800 50845087 -68899811 - AluJb SINE Alu -25 287 1 1997 103 3 52 chr13 50846827 50847137 -68897761 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr13 50847170 50847191 -68897707 + AT_rich Low_complexity Low_complexity 1 21 0 800 253 89 32 chr13 50847392 50847763 -68897135 + LTR16A LTR ERVL 52 443 -7 230 241 172 0 chr13 50847827 50847914 -68896984 + MIR3 SINE MIR 97 198 -10 870 141 0 15 chr13 50848008 50848143 -68896755 + FLAM_C SINE Alu 1 133 0 403 299 44 101 chr13 50848873 50848970 -68895928 + L2 LINE L2 2914 3015 -257 2282 113 7 0 chr13 50848970 50849280 -68895618 - AluSx SINE Alu 0 312 1 403 299 44 101 chr13 50849280 50849567 -68895331 + L2 LINE L2 3015 3270 -2 2109 113 30 7 chr13 50850696 50850998 -68893900 + AluSg1 SINE Alu 1 309 0 1770 119 8 23 chr13 50851781 50852041 -68892857 - AluSq SINE Alu -15 298 43 1186 244 102 36 chr13 50852155 50852790 -68892108 - L2 LINE L2 0 3313 2636 636 327 48 16 chr13 50853133 50853381 -68891517 - MIR SINE MIR -2 260 5 216 0 0 0 chr13 50854517 50854541 -68890357 + (TG)n Simple_repeat Simple_repeat 2 25 0 1261 206 127 0 chr13 50854864 50855131 -68889767 + AluJo SINE Alu 1 301 -1 237 286 54 0 chr13 50855195 50855307 -68889591 + L1ME LINE L1 4490 4607 -1539 22 0 0 0 chr13 50855347 50855369 -68889529 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 50855426 50855453 -68889445 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr13 50855723 50855753 -68889145 + AT_rich Low_complexity Low_complexity 1 30 0 901 290 60 35 chr13 50855981 50856513 -68888385 + L1ME LINE L1 5265 5807 -314 625 118 0 0 chr13 50856513 50856606 -68888292 - AluJb SINE Alu -9 303 211 6757 63 5 0 chr13 50856622 50858234 -68886664 - L1PA7 LINE L1 0 6154 4533 2019 126 0 4 chr13 50858265 50858542 -68886356 - AluSg SINE Alu -34 276 1 1751 164 6 32 chr13 50858803 50859115 -68885783 + AluJb SINE Alu 1 304 -8 33 85 0 0 chr13 50859470 50859552 -68885346 + AT_rich Low_complexity Low_complexity 1 82 0 610 155 0 0 chr13 50859599 50859696 -68885202 + AluJb SINE Alu 209 305 -7 347 281 79 40 chr13 50860405 50860783 -68884115 - LTR16A LTR ERVL 0 491 24 1289 235 62 17 chr13 50860792 50860964 -68883934 + MLT1A2 LTR MaLR 1 164 -210 195 42 0 0 chr13 50860964 50860988 -68883910 + (TC)n Simple_repeat Simple_repeat 2 25 0 1289 235 62 17 chr13 50860988 50861168 -68883730 + MLT1A2 LTR MaLR 164 369 -5 792 243 130 34 chr13 50861511 50861803 -68883095 - MLT1A1 LTR MaLR -45 320 1 971 271 98 26 chr13 50862228 50862605 -68882293 + L2 LINE L2 2301 2704 -610 829 271 132 17 chr13 50862628 50863107 -68881791 - L1MC4a LINE L1 -1659 6149 5616 552 190 29 29 chr13 50863649 50863786 -68881112 + LTR45 LTR ERV1 389 525 0 400 291 0 18 chr13 50864255 50864365 -68880533 + MIR SINE MIR 20 127 -81 24 32 0 0 chr13 50864550 50864581 -68880317 + AT_rich Low_complexity Low_complexity 1 31 0 2137 149 0 0 chr13 50864972 50865280 -68879618 - AluSx SINE Alu -4 308 1 335 252 5 24 chr13 50865328 50865428 -68879470 - MIR SINE MIR -41 167 66 184 125 0 0 chr13 50865434 50865466 -68879432 - L2 LINE L2 0 3313 3282 446 349 132 24 chr13 50866332 50866673 -68878225 - L2 LINE L2 0 3272 2895 570 252 56 26 chr13 50866845 50867079 -68877819 + L1MC4a LINE L1 5699 5939 -1869 371 332 77 63 chr13 50867845 50868273 -68876625 - L2 LINE L2 -35 3237 2804 257 279 0 0 chr13 50868583 50868651 -68876247 - MIR SINE MIR -34 228 161 290 230 124 26 chr13 50868651 50868764 -68876134 - LTR67 LTR ERVL 0 557 434 405 274 14 55 chr13 50869093 50869239 -68875659 - MIR SINE MIR -104 158 19 269 387 65 0 chr13 50869282 50869468 -68875430 + L2 LINE L2 2565 2762 -552 292 328 65 97 chr13 50870435 50870743 -68874155 - L2 LINE L2 -37 3235 2938 2125 104 23 16 chr13 50870761 50871068 -68873830 + AluSc SINE Alu 1 309 0 289 322 125 29 chr13 50871626 50871834 -68873064 - L2 LINE L2 -454 2860 2633 262 286 0 0 chr13 50873412 50873482 -68871416 + L2 LINE L2 3203 3272 0 2818 111 7 7 chr13 50873914 50874357 -68870541 + L1MC1 LINE L1 5525 5967 -366 840 171 0 20 chr13 50874364 50874510 -68870388 + FLAM_C SINE Alu 1 143 0 1680 125 117 23 chr13 50874518 50874861 -68870037 + L1MC1 LINE L1 5958 6332 -1 504 237 46 46 chr13 50875265 50875417 -68869481 + MER5B DNA MER1_type 25 176 -2 332 296 50 19 chr13 50875917 50876076 -68868822 - MIR SINE MIR -29 233 70 388 123 62 0 chr13 50876706 50876771 -68868127 + U6 snRNA snRNA 1 69 -38 2151 100 3 13 chr13 50876816 50877117 -68867781 - AluSx SINE Alu -10 302 5 1677 232 133 45 chr13 50877117 50877985 -68866913 + Charlie2a DNA MER1_type 94 1037 -1825 754 91 0 0 chr13 50877988 50878087 -68866811 - AluSp/q SINE Alu -16 297 199 450 228 86 0 chr13 50878162 50878324 -68866574 + Charlie2a DNA MER1_type 1049 1224 -1638 33585 49 6 0 chr13 50878330 50882857 -68862041 + L1P LINE L1 11 4558 -1588 275 300 55 9 chr13 50883138 50883248 -68861650 - MIR SINE MIR -76 186 72 5903 72 28 3 chr13 50883558 50884305 -68860593 - MER4E LTR ERV1 0 766 1 26 64 0 0 chr13 50885599 50885646 -68859252 + GC_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr13 50887368 50887391 -68857507 + AT_rich Low_complexity Low_complexity 1 23 0 702 103 47 9 chr13 50887391 50887498 -68857400 - HY1 scRNA scRNA -1 111 1 336 298 105 0 chr13 50888247 50888371 -68856527 + L2 LINE L2 3175 3311 -2 189 298 0 0 chr13 50888507 50888554 -68856344 + L3 LINE CR1 1524 1570 -7 281 248 186 18 chr13 50888562 50888675 -68856223 - L2 LINE L2 0 3313 3182 323 237 88 79 chr13 50890489 50890603 -68854295 + MIR3 SINE MIR 42 156 -52 606 242 66 74 chr13 50890962 50891206 -68853692 + MER112 DNA MER1_type 6 247 -13 1310 44 6 0 chr13 50891478 50891636 -68853262 + L1PA4 LINE L1 5997 6155 0 2385 97 3 0 chr13 50891771 50892080 -68852818 + AluSx SINE Alu 2 311 -1 495 278 54 58 chr13 50892834 50893171 -68851727 - L1MC/D LINE L1 -537 5584 5255 26 0 0 0 chr13 50893267 50893293 -68851605 + AT_rich Low_complexity Low_complexity 1 26 0 1865 177 0 0 chr13 50893294 50893588 -68851310 - 7SLRNA srpRNA srpRNA -21 299 6 318 271 56 42 chr13 50894099 50894243 -68850655 + MIR SINE MIR 117 262 0 204 135 96 39 chr13 50895016 50895068 -68849830 + MIR SINE MIR 164 218 -44 28 0 0 0 chr13 50895625 50895653 -68849245 + AT_rich Low_complexity Low_complexity 1 28 0 320 197 0 0 chr13 50896017 50896078 -68848820 + HsTC2 DNA Tc2 2 62 -1836 319 215 47 47 chr13 50896287 50896394 -68848504 - MLT1H LTR MaLR -440 109 3 378 149 40 14 chr13 50896428 50896502 -68848396 + HsTC2 DNA Tc2 1823 1898 0 2579 163 102 4 chr13 50896642 50897102 -68847796 + MLT1D LTR MaLR 1 505 0 2216 116 0 3 chr13 50897283 50897575 -68847323 + AluSx SINE Alu 1 291 -21 747 183 41 24 chr13 50897604 50897773 -68847125 - MER20 DNA MER1_type -46 173 2 575 278 150 22 chr13 50898147 50898420 -68846478 + MLT1L LTR MaLR 246 553 -62 200 178 22 44 chr13 50898449 50898494 -68846404 - MIR SINE MIR -108 154 111 197 319 64 99 chr13 50898462 50898603 -68846295 - MIR3 SINE MIR -67 141 6 * 1266 144 0 0 chr13 50899406 50899580 -68845318 + FAM SINE Alu 1 174 -1 2337 79 0 3 chr13 50900275 50900565 -68844333 + AluSg SINE Alu 17 305 -5 1098 253 30 68 chr13 50900689 50901116 -68843782 - MLT1J LTR MaLR 0 511 101 377 258 144 54 chr13 50901515 50902067 -68842831 + L1MC/D LINE L1 5211 5814 -775 1517 217 25 0 chr13 50902315 50902592 -68842306 + AluJb SINE Alu 1 284 -28 458 209 33 0 chr13 50902794 50902885 -68842013 - MLT1I LTR MaLR 0 409 316 852 283 35 17 chr13 50902914 50903144 -68841754 - MLT1I LTR MaLR -154 255 22 325 167 90 51 chr13 50903145 50903223 -68841675 + MIR SINE MIR 161 241 -21 802 112 0 0 chr13 50903690 50903797 -68841101 - AluSg/x SINE Alu -10 302 196 200 216 198 9 chr13 50904721 50904832 -68840066 + L2 LINE L2 3179 3310 -3 1605 135 107 38 chr13 50905523 50905812 -68839086 + AluJo SINE Alu 1 309 -3 2466 73 0 0 chr13 50906836 50907136 -68837762 + AluSq SINE Alu 1 300 -13 299 391 105 0 chr13 50908243 50908376 -68836522 - L2 LINE L2 0 3272 3126 2143 138 0 0 chr13 50908563 50908867 -68836031 - AluSx SINE Alu -8 304 1 302 271 12 0 chr13 50908939 50909024 -68835874 + MER94 DNA DNA 44 129 -5 389 200 24 0 chr13 50909108 50909193 -68835705 + MIR SINE MIR 114 200 -62 1151 251 93 46 chr13 50910169 50910940 -68833958 - L2 LINE L2 -3 3310 2524 332 314 69 19 chr13 50911959 50912118 -68832780 + MIR SINE MIR 20 186 -76 6441 170 104 47 chr13 50912484 50913079 -68831819 - MER52A LTR ERV1 -1 1754 1194 2096 112 6 48 chr13 50913079 50913393 -68831505 - AluSq SINE Alu -12 301 1 6441 170 104 47 chr13 50913393 50914382 -68830516 - MER52A LTR ERV1 -561 1194 2 289 246 15 0 chr13 50914682 50914747 -68830151 + MIR3 SINE MIR 122 187 -21 197 100 50 0 chr13 50915500 50915540 -68829358 + T-rich Low_complexity Low_complexity 2 43 0 252 263 189 53 chr13 50915541 50915769 -68829129 - L1ME4a LINE L1 0 6121 5863 323 282 161 17 chr13 50915770 50915944 -68828954 + MLT1L LTR MaLR 413 611 -4 2360 92 0 16 chr13 50916471 50916788 -68828110 - AluSq SINE Alu 0 313 2 1941 115 14 7 chr13 50917058 50917357 -68827541 + AluSg SINE Alu 1 301 0 2157 89 0 4 chr13 50917590 50917859 -68827039 - AluSq SINE Alu -45 268 1 233 235 115 95 chr13 50917909 50918109 -68826789 + L1MC5 LINE L1 7706 7909 -52 212 358 166 19 chr13 50920014 50920321 -68824577 + L2 LINE L2 2492 2843 -471 3808 114 49 0 chr13 50920363 50920891 -68824007 + MER41C LTR ERV1 1 554 0 303 242 0 0 chr13 50921340 50921402 -68823496 - MER5A DNA MER1_type 0 189 128 1432 200 11 0 chr13 50921405 50921685 -68823213 - L1M4 LINE L1 -1076 5070 4788 336 343 72 25 chr13 50922600 50922836 -68822062 - MIR SINE MIR -10 252 6 2147 103 3 23 chr13 50923188 50923498 -68821400 + AluSx SINE Alu 5 308 -4 1179 134 0 6 chr13 50923735 50923899 -68820999 - AluSx SINE Alu -149 163 1 219 341 121 0 chr13 50924032 50924123 -68820775 - L2 LINE L2 -15 3298 3197 547 280 10 55 chr13 50924269 50924469 -68820429 - MIR SINE MIR -71 191 1 308 333 45 13 chr13 50924481 50924637 -68820261 + L1 LINE L1 4759 4919 -1227 392 309 29 15 chr13 50924995 50925131 -68819767 - MIR SINE MIR -121 141 4 1622 42 0 0 chr13 50925913 50926105 -68818793 + AluYa5 SINE Alu 119 310 -1 301 262 29 84 chr13 50926277 50926530 -68818368 - L1MEd LINE L1 -4924 1195 956 1745 138 17 38 chr13 50926530 50926844 -68818054 - AluJb SINE Alu 0 308 1 301 262 29 84 chr13 50926844 50926864 -68818034 - L1MEd LINE L1 -5163 956 936 2443 80 10 0 chr13 50926927 50927226 -68817672 - AluSc SINE Alu -7 302 1 1160 135 26 10 chr13 50927316 50927509 -68817389 - L1MB4 LINE L1 0 6180 5985 273 333 12 0 chr13 50927632 50927716 -68817182 - L2 LINE L2 -20 3252 3168 327 295 57 0 chr13 50930056 50930161 -68814737 + L2 LINE L2 2207 2317 -997 227 265 86 152 chr13 50930446 50930887 -68814011 + L2 LINE L2 2861 3272 0 1738 174 47 19 chr13 50931118 50931440 -68813458 - MER2 DNA MER2_type 0 345 15 1724 178 33 69 chr13 50931440 50931732 -68813166 - MER7A DNA MER2_type -2692 346 70 1642 167 3 39 chr13 50931732 50932038 -68812860 + AluJo SINE Alu 10 304 -8 1724 178 33 69 chr13 50932038 50932105 -68812793 - MER7A DNA MER2_type -2968 70 2 900 108 15 15 chr13 50932868 50932998 -68811900 + L1PA8A LINE L1 6000 6129 -2 2152 141 0 0 chr13 50933115 50933420 -68811478 + AluSx SINE Alu 1 305 -7 2562 43 3 18 chr13 50933676 50934003 -68810895 - L1PA4 LINE L1 0 6155 5834 36541 49 6 2 chr13 50934003 50938801 -68806097 - L1PA4 LINE L1 -1328 4818 3 5238 230 136 12 chr13 50939267 50941806 -68803092 - L1M4 LINE L1 -1811 4833 1876 1910 193 79 76 chr13 50941819 50942541 -68802357 - L1M4 LINE L1 -5003 1539 816 230 259 24 12 chr13 50942773 50942858 -68802040 - L1M4 LINE L1 -6455 87 2 2121 122 0 0 chr13 50943154 50943478 -68801420 - AluSx SINE Alu 0 324 1 2118 107 10 10 chr13 50944457 50944748 -68800150 - AluSx SINE Alu -21 291 1 26 0 0 0 chr13 50945616 50945642 -68799256 + AT_rich Low_complexity Low_complexity 1 26 0 2185 100 17 10 chr13 50946194 50946517 -68798381 - AluSx SINE Alu 0 312 1 209 111 139 0 chr13 50946953 50946989 -68797909 + L2 LINE L2 3267 3307 -6 577 178 31 0 chr13 50947139 50947244 -68797654 + MER5A DNA MER1_type 4 112 -77 653 184 0 92 chr13 50947266 50947418 -68797480 + FLAM_C SINE Alu 1 138 -5 232 379 0 11 chr13 50947583 50947670 -68797228 - L2 LINE L2 -10 3262 3177 422 357 47 8 chr13 50949150 50949279 -68795619 - L2 LINE L2 -5 3267 3134 230 296 56 28 chr13 50951192 50951300 -68793598 + MIR3 SINE MIR 5 115 -93 2348 67 40 0 chr13 50952131 50952430 -68792468 - AluYa5 SINE Alu 0 311 1 444 37 0 0 chr13 50954358 50954412 -68790486 + (CA)n Simple_repeat Simple_repeat 1 54 0 5830 149 17 19 chr13 50954605 50955651 -68789247 - L1PB1 LINE L1 0 6151 5116 2237 127 0 0 chr13 50955651 50955958 -68788940 - AluSx SINE Alu -5 307 1 5830 149 17 19 chr13 50955958 50956803 -68788095 - L1PB1 LINE L1 -1035 5116 4271 185 211 58 0 chr13 50956969 50957021 -68787877 + L2 LINE L2 3257 3311 -2 1171 263 86 10 chr13 50959834 50960453 -68784445 + MER115 DNA AcHobo 1 692 -1 848 211 130 8 chr13 50963536 50963783 -68781115 - MLT1C LTR MaLR -4 463 187 828 219 0 0 chr13 50963823 50963969 -68780929 - FRAM SINE Alu -36 140 1 1747 171 7 7 chr13 50963977 50964276 -68780622 - AluJo SINE Alu -13 299 1 610 194 116 7 chr13 50964284 50964439 -68780459 - MLT1C LTR MaLR -290 177 6 287 318 64 18 chr13 50966252 50966362 -68778536 + L2 LINE L2 3158 3272 0 936 224 92 4 chr13 50966399 50966627 -68778271 + MIR SINE MIR 5 252 -10 195 311 168 49 chr13 50968458 50968744 -68776154 + L2 LINE L2 2327 2646 -668 2568 127 35 24 chr13 50969200 50969626 -68775272 - Tigger2a DNA MER2_type 0 434 4 521 284 111 13 chr13 50970014 50970239 -68774659 + MIR SINE MIR 16 262 0 24 0 0 0 chr13 50970915 50970939 -68773959 + AT_rich Low_complexity Low_complexity 1 24 0 38 68 0 0 chr13 50970948 50971021 -68773877 + AT_rich Low_complexity Low_complexity 1 73 0 774 261 76 83 chr13 50971058 50971453 -68773445 - L2 LINE L2 -5 3308 2917 291 344 5 77 chr13 50972311 50972506 -68772392 + MIR3 SINE MIR 14 194 -14 473 171 0 0 chr13 50973755 50973837 -68771061 + Charlie1 DNA MER1_type 59 140 -2621 * 911 148 60 5 chr13 50973835 50974052 -68770846 + Charlie1 DNA MER1_type 2419 2647 -114 42136 37 4 1 chr13 50974071 50980204 -68764694 - L1PA3 LINE L1 -2 6153 1 227 307 37 32 chr13 50980368 50980557 -68764341 + L1ME4a LINE L1 4802 4991 -1155 692 261 61 48 chr13 50981004 50981224 -68763674 + L1ME4a LINE L1 5518 5747 -374 2004 164 0 3 chr13 50981224 50981523 -68763375 + AluJb SINE Alu 1 298 -14 692 261 61 48 chr13 50981523 50981678 -68763220 + L1ME4a LINE L1 5747 5898 -223 690 287 121 5 chr13 50981824 50982047 -68762851 - MIR SINE MIR -6 256 8 396 321 16 0 chr13 50982048 50982241 -68762657 + L1MC4a LINE L1 3648 3843 -2303 351 318 56 17 chr13 50982690 50982869 -68762029 + L1MC4a LINE L1 5152 5337 -809 49 18 0 0 chr13 50983478 50983534 -68761364 + AT_rich Low_complexity Low_complexity 1 56 0 312 173 27 27 chr13 50983534 50983680 -68761218 + A-rich Low_complexity Low_complexity 1 146 0 51 86 0 0 chr13 50983716 50983844 -68761054 + AT_rich Low_complexity Low_complexity 1 128 0 308 279 101 17 chr13 50984148 50984365 -68760533 + L1MC4a LINE L1 5542 5574 -547 2388 81 0 3 chr13 50984365 50984660 -68760238 + AluSp SINE Alu 1 294 -19 308 279 101 17 chr13 50984660 50984757 -68760141 + L1MC4a LINE L1 5574 5661 -460 2404 97 0 0 chr13 50984922 50985221 -68759677 + AluSg SINE Alu 1 299 -11 22 35 0 0 chr13 50985330 50985359 -68759539 + AT_rich Low_complexity Low_complexity 1 29 0 2226 107 10 0 chr13 50985711 50986011 -68758887 + AluSx SINE Alu 1 303 -9 258 215 31 46 chr13 50986752 50986817 -68758081 - L2 LINE L2 -21 3251 3188 331 294 135 43 chr13 50987438 50987601 -68757297 - MIR SINE MIR -83 179 2 302 246 251 42 chr13 50987841 50988008 -68756890 - L3 LINE CR1 -34 1543 1342 258 424 93 0 chr13 50988028 50988179 -68756719 - L2 LINE L2 -6 3266 3102 323 319 11 0 chr13 50988188 50988282 -68756616 - L3 LINE CR1 -238 1339 1245 26 74 0 0 chr13 50988448 50988502 -68756396 + AT_rich Low_complexity Low_complexity 1 54 0 1438 178 113 106 chr13 50988565 50989103 -68755795 + MLT1F LTR MaLR 1 542 0 1062 139 22 0 chr13 50989266 50989446 -68755452 - L1MA3 LINE L1 0 6305 6122 435 292 111 37 chr13 50989507 50989750 -68755148 - L3 LINE CR1 -732 845 585 964 321 68 44 chr13 50989902 50990811 -68754087 + L1MEd LINE L1 346 1276 -5096 1319 247 72 17 chr13 50990843 50990859 -68754039 + L1MEd LINE L1 1549 1563 -5000 1831 159 4 0 chr13 50990859 50991135 -68753763 - AluJo SINE Alu -30 282 6 1319 247 72 17 chr13 50991135 50991621 -68753277 + L1MEd LINE L1 1563 2235 -4328 1046 119 80 28 chr13 50991624 50991800 -68753098 - AluSg/x SINE Alu 0 312 128 460 97 0 0 chr13 50991801 50991863 -68753035 - Alu SINE Alu -256 62 1 1834 244 42 40 chr13 50991864 50991892 -68753006 + L1MEd LINE L1 2228 2254 -4128 1427 220 48 0 chr13 50991892 50992187 -68752711 + AluJo SINE Alu 1 309 -3 1834 244 42 40 chr13 50992187 50993043 -68751855 + L1MEd LINE L1 2254 3066 -3316 439 233 95 0 chr13 50993055 50993159 -68751739 + FLAM_C SINE Alu 4 121 -191 17602 46 6 9 chr13 50993159 50996135 -68748763 + L1PA5 LINE L1 3176 6152 -2 439 233 95 0 chr13 50996135 50996146 -68748752 + FLAM_C SINE Alu 121 130 -182 2250 263 43 15 chr13 50996147 50997008 -68747890 + L1MEd LINE L1 3194 4078 -2304 1429 138 39 4 chr13 50997018 50997272 -68747626 + L1MB3 LINE L1 5641 5903 -280 1620 123 104 4 chr13 50997272 50997523 -68747375 + AluSx SINE Alu 1 276 -36 292 91 0 0 chr13 50997662 50997706 -68747192 + AluSx SINE Alu 254 297 -4 1346 143 70 11 chr13 50997706 50997978 -68746920 + L1MB3 LINE L1 5894 6181 -2 2735 160 57 51 chr13 50998076 50998112 -68746786 + L1MB7 LINE L1 5495 5529 -655 2200 98 0 7 chr13 50998112 50998437 -68746461 - AluSq SINE Alu 0 323 1 2735 160 57 51 chr13 50998437 50998588 -68746310 + L1MB7 LINE L1 5529 5678 -506 6304 112 84 26 chr13 50998588 50999748 -68745150 - Tigger3b DNA MER2_type -1 1230 3 2735 160 57 51 chr13 50999748 51000244 -68744654 + L1MB7 LINE L1 5678 6184 0 2776 0 0 3 chr13 51000254 51000556 -68744342 + AluYa5 SINE Alu 1 301 -10 1339 214 86 16 chr13 51000564 51000994 -68743904 + L1M4 LINE L1 3656 4115 -2031 336 293 102 20 chr13 51001325 51001472 -68743426 + MIR3 SINE MIR 19 177 -31 393 325 8 0 chr13 51002358 51002475 -68742423 + MIR3 SINE MIR 81 198 -10 402 21 0 0 chr13 51002541 51002588 -68742310 + (CA)n Simple_repeat Simple_repeat 1 47 0 224 156 0 172 chr13 51004537 51004601 -68740297 - MIR3 SINE MIR -11 197 145 1435 172 12 16 chr13 51004601 51004922 -68739976 - MLT1A1 LTR MaLR 0 365 12 261 0 0 0 chr13 51004927 51004956 -68739942 + (TC)n Simple_repeat Simple_repeat 2 30 0 192 40 0 0 chr13 51004960 51004985 -68739913 + (CA)n Simple_repeat Simple_repeat 1 25 0 516 210 34 0 chr13 51004986 51005105 -68739793 + L1MA9 LINE L1 6168 6290 -22 431 296 25 26 chr13 51005119 51005279 -68739619 - MIR3 SINE MIR -48 160 2 382 326 51 20 chr13 51006538 51006741 -68738157 - MIR3 SINE MIR -46 216 12 462 278 57 43 chr13 51007106 51007458 -68737440 - L1MC5 LINE L1 -129 7832 7476 601 221 34 55 chr13 51007789 51008024 -68736874 - L1MC5 LINE L1 -737 7224 6995 525 216 20 103 chr13 51008141 51008207 -68736691 - L1MC4 LINE L1 -1036 7006 6936 2319 96 6 13 chr13 51008207 51008521 -68736377 - AluSq SINE Alu -1 312 1 1952 141 34 3 chr13 51008531 51008857 -68736041 - L1MC1 LINE L1 0 6333 5998 525 216 20 103 chr13 51008857 51008983 -68735915 - L1MC4 LINE L1 -1115 6927 6820 343 346 54 48 chr13 51008995 51009290 -68735608 - L1MC4a LINE L1 -1176 6632 6336 660 148 111 19 chr13 51009454 51009616 -68735282 - MER68 LTR ERV1 -385 177 1 235 241 105 8 chr13 51009655 51009788 -68735110 - L1M4 LINE L1 -803 5343 5198 491 291 99 50 chr13 51009802 51010468 -68734430 - L1M4 LINE L1 -1031 5115 4417 252 330 84 82 chr13 51011972 51012666 -68732232 + L2 LINE L2 1093 1791 -1523 2023 121 15 15 chr13 51012666 51013005 -68731893 - L1MB3 LINE L1 -7 6176 5838 252 330 84 82 chr13 51013005 51013329 -68731569 + L2 LINE L2 1791 2113 -1201 293 314 55 92 chr13 51013379 51013761 -68731137 - L2 LINE L2 -93 3179 2812 2086 121 38 0 chr13 51014986 51015275 -68729623 - AluSx SINE Alu -12 300 1 180 322 34 17 chr13 51015664 51015723 -68729175 - L2 LINE L2 -57 3256 3197 2258 117 0 3 chr13 51015893 51016192 -68728706 - AluSx SINE Alu -14 298 1 557 343 96 10 chr13 51016314 51016722 -68728176 - L2 LINE L2 -510 2804 2362 21 57 0 0 chr13 51017354 51017389 -68727509 + AT_rich Low_complexity Low_complexity 1 35 0 756 180 11 60 chr13 51017395 51017578 -68727320 - L1MB4 LINE L1 0 6180 6007 314 336 149 24 chr13 51018116 51018324 -68726574 - L2 LINE L2 -9 3263 3030 357 244 33 0 chr13 51018473 51018563 -68726335 + L2 LINE L2 3171 3263 -9 1103 229 29 12 chr13 51019006 51019246 -68725652 - MIR SINE MIR 0 262 19 2414 83 0 0 chr13 51019345 51019646 -68725252 - AluSg SINE Alu -9 301 1 289 229 16 0 chr13 51020078 51020139 -68724759 - MIR SINE MIR -24 238 177 486 249 266 33 chr13 51020283 51020524 -68724374 - L2 LINE L2 -21 3292 2996 22 35 0 0 chr13 51021010 51021039 -68723859 + AT_rich Low_complexity Low_complexity 1 29 0 233 175 0 0 chr13 51021249 51021289 -68723609 - MIR SINE MIR -67 195 156 245 319 14 0 chr13 51021336 51021408 -68723490 - MIR SINE MIR -103 159 87 2405 81 0 0 chr13 51023288 51023584 -68721314 + AluSg SINE Alu 1 296 -14 381 319 29 48 chr13 51026127 51026337 -68718561 + MIR SINE MIR 14 219 -43 407 273 36 27 chr13 51026467 51026577 -68718321 - L2 LINE L2 0 3272 3162 905 203 17 11 chr13 51027264 51027441 -68717457 + MER45A DNA AcHobo 1 178 0 558 231 98 69 chr13 51028135 51028481 -68716417 - LTR37A LTR ERV1 -52 374 19 234 0 0 0 chr13 51028593 51028619 -68716279 + (A)n Simple_repeat Simple_repeat 1 26 0 1794 108 112 22 chr13 51028818 51029095 -68715803 - AluSg SINE Alu 0 310 9 1258 234 80 92 chr13 51029100 51029859 -68715039 - MER31-int LTR ERV1 -860 4076 3327 1886 164 4 0 chr13 51030398 51030679 -68714219 - AluJb SINE Alu -25 287 6 2264 178 58 17 chr13 51030827 51031306 -68713592 + LTR10B LTR ERV1 7 505 0 21 0 0 0 chr13 51031423 51031444 -68713454 + AT_rich Low_complexity Low_complexity 1 21 0 1690 183 37 12 chr13 51031790 51032199 -68712699 + Charlie1b DNA MER1_type 105 523 0 417 197 49 8 chr13 51033774 51033896 -68711002 - LTR37A LTR ERV1 -2 424 298 429 272 107 65 chr13 51035224 51035583 -68709315 + L1MCa LINE L1 2189 3691 -2735 276 258 76 38 chr13 51037165 51037297 -68707601 - L1ME4a LINE L1 -30 6091 5955 270 56 0 0 chr13 51037457 51037493 -68707405 + (TG)n Simple_repeat Simple_repeat 2 37 0 1990 108 10 26 chr13 51037512 51037819 -68707079 + AluSx SINE Alu 1 302 -10 379 267 58 61 chr13 51038133 51038433 -68706465 - L1PA8A LINE L1 -564 5567 5267 347 197 92 0 chr13 51038862 51038938 -68705960 + L2 LINE L2 3188 3270 -2 272 316 41 0 chr13 51040980 51041078 -68703820 - MIR3 SINE MIR -11 197 96 1060 167 0 12 chr13 51042111 51042279 -68702619 + FRAM SINE Alu 1 166 0 1651 156 14 0 chr13 51042608 51042890 -68702008 + AluJb SINE Alu 1 286 -26 1635 172 13 1 chr13 51044490 51044779 -68700119 - MER1B DNA MER1_type 0 339 3 199 175 0 25 chr13 51046871 51046911 -68697987 - MIR3 SINE MIR -9 199 161 1675 168 17 0 chr13 51047349 51047641 -68697257 + AluJo SINE Alu 1 297 -15 285 335 28 37 chr13 51048146 51048361 -68696537 - L2 LINE L2 -194 3078 2866 21 0 0 0 chr13 51050392 51050413 -68694485 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 51051972 51051993 -68692905 + AT_rich Low_complexity Low_complexity 1 21 0 187 281 141 0 chr13 51052698 51052762 -68692136 - MIR3 SINE MIR -10 198 126 472 194 39 54 chr13 51053683 51053812 -68691086 + MIR SINE MIR 103 229 -33 217 355 56 0 chr13 51053853 51053960 -68690938 - MIR3 SINE MIR -54 154 42 301 323 21 0 chr13 51054865 51054958 -68689940 + L2 LINE L2 3161 3255 -17 1294 98 25 102 chr13 51054970 51055205 -68689693 + AluSq SINE Alu 10 226 -87 1908 151 46 14 chr13 51055742 51056092 -68688806 - MER46B DNA MER2_type 0 236 1 349 159 29 14 chr13 51056724 51056793 -68688105 - MLT1D LTR MaLR -11 494 425 957 217 35 28 chr13 51058528 51058942 -68685956 - MLT1D LTR MaLR -64 441 1 335 281 56 75 chr13 51059755 51059915 -68684983 + HAL1b LINE L1 1186 1342 -6 286 215 111 67 chr13 51060085 51060220 -68684678 + L1ME4a LINE L1 5964 6104 -17 245 283 22 0 chr13 51060409 51060501 -68684397 + MIR SINE MIR 7 100 -162 341 267 86 9 chr13 51061175 51061280 -68683618 + L1MCa LINE L1 1958 2070 -4356 223 200 44 0 chr13 51061306 51061351 -68683547 - MIR SINE MIR -86 122 76 2167 96 0 0 chr13 51062223 51062535 -68682363 + AluSx SINE Alu 3 314 0 469 291 233 22 chr13 51063687 51064905 -68679993 - L2 LINE L2 -1 3312 1836 1208 226 69 67 chr13 51065847 51066326 -68678572 - L1ME1 LINE L1 -50 6116 5637 328 286 111 8 chr13 51066338 51066464 -68678434 - MIR SINE MIR -74 188 50 223 264 243 0 chr13 51066591 51066739 -68678159 - L2 LINE L2 -167 3105 2922 189 304 18 18 chr13 51067210 51067266 -68677632 + L2 LINE L2 3204 3259 -13 2124 117 0 0 chr13 51067272 51067562 -68677336 + AluSx SINE Alu 1 290 -22 369 213 39 87 chr13 51068006 51068133 -68676765 + MLT1H LTR MaLR 429 549 0 292 252 205 16 chr13 51068213 51068340 -68676558 + MIR SINE MIR 111 261 -1 380 256 84 78 chr13 51069840 51070031 -68674867 + MIR SINE MIR 15 206 -56 37 39 0 0 chr13 51070031 51070082 -68674816 + AT_rich Low_complexity Low_complexity 1 51 0 321 273 72 36 chr13 51070082 51070221 -68674677 + L1MCa LINE L1 1948 2091 -4335 * 334 187 40 53 chr13 51070182 51070257 -68674641 - L1MCa LINE L1 -4361 2065 1992 * 345 245 19 57 chr13 51070198 51070304 -68674594 + L1MC4 LINE L1 6613 6714 -1328 901 210 60 0 chr13 51070371 51070538 -68674360 + MER45A DNA AcHobo 2 178 0 1689 144 3 52 chr13 51070895 51071201 -68673697 + AluJo SINE Alu 3 293 -19 885 183 21 31 chr13 51071687 51071878 -68673020 - MER5A DNA MER1_type 0 189 1 1118 151 132 4 chr13 51072695 51072953 -68671945 - MER33 DNA MER1_type 0 324 34 327 266 133 21 chr13 51073649 51073792 -68671106 - HAL1b LINE L1 -3 1345 1187 23 33 0 0 chr13 51073798 51073828 -68671070 + AT_rich Low_complexity Low_complexity 1 30 0 240 191 63 16 chr13 51073836 51073899 -68670999 - L1MC/D LINE L1 -1884 5924 5859 4846 144 29 39 chr13 51073936 51074716 -68670182 - L1MB1 LINE L1 -1 6167 5396 2010 121 0 22 chr13 51074716 51075029 -68669869 - AluSx SINE Alu -6 306 1 4846 144 29 39 chr13 51075029 51075149 -68669749 - L1MB1 LINE L1 -772 5396 5276 501 143 0 12 chr13 51076962 51077046 -68667852 + L1MC3 LINE L1 7322 7404 -381 192 200 0 0 chr13 51077707 51077757 -68667141 + (TAA)n Simple_repeat Simple_repeat 1 50 0 717 178 113 11 chr13 51077846 51078031 -68666867 - LTR33A LTR ERVL -26 497 294 340 261 0 11 chr13 51078062 51078150 -68666748 - LTR33 LTR ERVL -317 204 118 360 275 55 0 chr13 51078399 51078508 -68666390 - MIR SINE MIR -113 149 35 802 249 12 0 chr13 51079504 51079669 -68665229 + MER45A DNA AcHobo 12 178 0 343 200 352 8 chr13 51080552 51080677 -68664221 + MER5B DNA MER1_type 10 177 -1 696 264 7 0 chr13 51082507 51082662 -68662236 + MER91B DNA MER1_type 24 179 -11 696 260 73 5 chr13 51083313 51083505 -68661393 + MIR SINE MIR 43 247 -15 2135 94 0 3 chr13 51083524 51083811 -68661087 - AluSx SINE Alu -24 288 3 342 0 0 0 chr13 51084495 51084533 -68660365 + (CA)n Simple_repeat Simple_repeat 1 38 0 453 235 206 7 chr13 51084590 51084726 -68660172 + MER5A DNA MER1_type 11 173 -16 554 260 20 14 chr13 51085566 51085712 -68659186 + MER5B DNA MER1_type 29 175 -3 30 0 0 0 chr13 51086331 51086361 -68658537 + GC_rich Low_complexity Low_complexity 1 30 0 448 284 147 0 chr13 51087781 51087978 -68656920 + MIR SINE MIR 31 256 -6 273 214 0 0 chr13 51088260 51088316 -68656582 + MIR SINE MIR 36 91 -117 700 284 116 4 chr13 51088324 51088549 -68656349 - MIR SINE MIR -10 252 3 435 259 19 9 chr13 51088555 51088663 -68656235 + MIR3 SINE MIR 94 202 -6 237 65 0 0 chr13 51088966 51088997 -68655901 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 293 86 21 chr13 51090270 51090416 -68654482 + MIR SINE MIR 22 191 -68 206 240 120 0 chr13 51090424 51090474 -68654424 - L2 LINE L2 -1 3312 3257 * 510 263 46 13 chr13 51090452 51090604 -68654294 - MIR SINE MIR -93 169 13 4165 150 27 19 chr13 51090975 51091720 -68653178 - L1MB3 LINE L1 -2 6181 5431 1948 68 80 0 chr13 51091884 51092133 -68652765 - AluY SINE Alu -16 295 27 307 289 49 88 chr13 51092549 51092620 -68652278 + L1ME4a LINE L1 5847 5919 -202 2524 78 0 3 chr13 51092620 51092928 -68651970 - AluSc SINE Alu -2 307 1 307 289 49 88 chr13 51092928 51093140 -68651758 + L1ME4a LINE L1 5919 6119 -2 694 254 58 55 chr13 51093234 51093631 -68651267 - LTR16A1 LTR ERVL 0 457 60 1307 254 6 3 chr13 51094373 51094703 -68650195 + LTR53 LTR ERVL 189 519 0 1519 171 6 105 chr13 51094885 51095219 -68649679 + AluJo SINE Alu 1 301 -1 217 247 137 0 chr13 51095951 51096024 -68648874 - MER5A DNA MER1_type -105 84 2 557 169 0 0 chr13 51096780 51096863 -68648035 - FRAM SINE Alu -18 158 76 291 71 0 0 chr13 51098971 51099013 -68645885 + (TG)n Simple_repeat Simple_repeat 1 42 0 209 239 84 42 chr13 51100857 51100928 -68643970 - MIR SINE MIR -36 226 153 428 211 55 16 chr13 51100967 51101095 -68643803 + L1ME4a LINE L1 5989 6121 0 383 231 13 0 chr13 51101165 51101243 -68643655 - MIR SINE MIR -111 151 73 186 358 11 32 chr13 51101998 51102093 -68642805 + MIR SINE MIR 154 246 -16 616 222 8 0 chr13 51102239 51102365 -68642533 - MER94 DNA DNA -2 132 6 252 59 0 0 chr13 51103986 51104020 -68640878 + (A)n Simple_repeat Simple_repeat 1 34 0 1844 151 7 20 chr13 51105397 51105695 -68639203 - AluJb SINE Alu -18 294 1 410 260 38 18 chr13 51105787 51105961 -68638937 + MLT1I LTR MaLR 279 409 0 768 144 25 0 chr13 51106669 51106829 -68638069 - L1MB4 LINE L1 0 6180 6017 2220 116 0 0 chr13 51106988 51107289 -68637609 + AluSx SINE Alu 1 301 -11 961 140 13 0 chr13 51107675 51107825 -68637073 - L1MB5 LINE L1 -13 6161 6010 1537 125 139 52 chr13 51107939 51108226 -68636672 - AluJo SINE Alu 0 312 1 381 312 29 47 chr13 51108602 51108772 -68636126 + MER5A DNA MER1_type 23 189 0 399 291 57 29 chr13 51109564 51109739 -68635159 + MIR3 SINE MIR 20 199 -9 686 246 73 103 chr13 51109993 51110537 -68634361 + MLT1K LTR MaLR 29 556 -32 869 255 12 9 chr13 51110932 51111454 -68633444 + MER45B DNA AcHobo 57 707 -333 1059 216 128 7 chr13 51111562 51111844 -68633054 + MER34 LTR ERV1 227 542 0 481 305 34 56 chr13 51111937 51112170 -68632728 + MIR SINE MIR 34 261 -1 1791 174 7 13 chr13 51112697 51112996 -68631902 + AluJo SINE Alu 3 299 -13 320 279 133 34 chr13 51114515 51114748 -68630150 - L2 LINE L2 -158 3114 2859 222 378 61 0 chr13 51115078 51115242 -68629656 - L2 LINE L2 -815 2499 2326 2363 81 7 16 chr13 51116770 51117079 -68627819 - AluSc SINE Alu -3 306 1 686 243 151 61 chr13 51117400 51117592 -68627306 - L1MC4 LINE L1 -130 7678 7505 1777 166 138 9 chr13 51117592 51117941 -68626957 + MSTD LTR MaLR 1 394 -2 686 243 151 61 chr13 51117941 51118288 -68626610 - L1MC4 LINE L1 -303 7505 7121 291 316 67 31 chr13 51118316 51118541 -68626357 - L2 LINE L2 -337 2977 2745 343 194 15 0 chr13 51119185 51119252 -68625646 - L2 LINE L2 -18 3295 3228 279 262 36 0 chr13 51120288 51120372 -68624526 - MIR SINE MIR -117 145 59 557 309 60 9 chr13 51120383 51120600 -68624298 - MIR SINE MIR -2 260 33 426 239 74 1 chr13 51121616 51121720 -68623178 - MIR SINE MIR -62 146 37 483 146 73 31 chr13 51121901 51122036 -68622862 - MIR SINE MIR -62 146 10 184 250 25 0 chr13 51122250 51122290 -68622608 + L2 LINE L2 3226 3266 -6 359 302 47 19 chr13 51124543 51124758 -68620140 - L1ME LINE L1 -594 5568 5348 786 221 101 5 chr13 51125466 51125665 -68619233 + MER20 DNA MER1_type 1 218 -1 240 214 0 0 chr13 51125758 51125814 -68619084 + (TA)n Simple_repeat Simple_repeat 2 57 0 423 305 55 47 chr13 51127000 51127256 -68617642 + L3 LINE CR1 1171 1428 -149 425 285 60 6 chr13 51127294 51127472 -68617426 - MER5A DNA MER1_type -1 177 1 245 258 144 0 chr13 51127572 51127669 -68617229 - MER96 DNA MER1_type? -8 167 57 3343 95 169 40 chr13 51127807 51128772 -68616126 + Tigger3b DNA MER2_type 1 1089 -143 1698 160 72 0 chr13 51128763 51129056 -68615842 + MER1B DNA MER1_type 26 339 0 * 673 216 0 0 chr13 51129056 51129178 -68615720 + Tigger3b DNA MER2_type 1108 1229 -2 379 278 8 24 chr13 51129642 51129768 -68615130 - LTR33A LTR ERVL -57 466 343 293 312 159 7 chr13 51129806 51129944 -68614954 - MIR SINE MIR -98 164 6 1585 182 82 0 chr13 51130740 51131069 -68613829 + L1MB2 LINE L1 5815 6170 -1 829 188 61 18 chr13 51131496 51131661 -68613237 + AluJo SINE Alu 5 176 -136 263 240 0 27 chr13 51131678 51131753 -68613145 - L1M4 LINE L1 -1526 4620 4548 34 24 0 0 chr13 51132092 51132133 -68612765 + AT_rich Low_complexity Low_complexity 1 41 0 634 358 93 34 chr13 51132163 51132602 -68612296 - L1MC4a LINE L1 -1127 6681 6217 1578 189 4 21 chr13 51132642 51132991 -68611907 + AluJo SINE Alu 32 375 0 2202 261 18 8 chr13 51133015 51133070 -68611828 - L1MC4a LINE L1 -1926 5882 5829 2372 119 0 0 chr13 51133070 51133380 -68611518 - AluSg SINE Alu 0 310 1 2202 261 18 8 chr13 51133380 51133932 -68610966 - L1MC4a LINE L1 -1979 5829 5269 260 246 82 0 chr13 51133937 51133998 -68610900 - L2 LINE L2 -57 3256 3191 2279 73 13 13 chr13 51134155 51134455 -68610443 + AluSq SINE Alu 1 300 -13 2214 156 62 29 chr13 51134457 51134682 -68610216 - Tigger2a DNA MER2_type -2274 434 187 2293 118 0 10 chr13 51134682 51134996 -68609902 + AluSx SINE Alu 1 311 -1 2214 156 62 29 chr13 51134996 51135188 -68609710 - Tigger2a DNA MER2_type -2521 187 3 741 216 115 21 chr13 51135246 51135533 -68609365 + L1ME4a LINE L1 5806 6119 -2 793 258 57 13 chr13 51136134 51136363 -68608535 + MIR SINE MIR 21 259 -3 305 289 59 40 chr13 51137079 51137453 -68607445 + L1MEd LINE L1 830 1210 -4909 2313 190 75 105 chr13 51137471 51138186 -68606712 - LTR8A LTR ERV1 0 727 34 331 253 141 32 chr13 51138221 51138470 -68606428 + L1MEd LINE L1 1280 1555 -4755 232 324 80 6 chr13 51138803 51138979 -68605919 + L1MEd LINE L1 1543 1731 -4579 2676 244 63 24 chr13 51138990 51140171 -68604727 + L1MEd LINE L1 1796 2986 -3143 1406 177 44 51 chr13 51140171 51140499 -68604399 - MER61B LTR ERV1 0 425 2 2942 196 51 111 chr13 51140603 51141063 -68603835 + L1M4 LINE L1 328 814 -5728 417 20 0 0 chr13 51141063 51141113 -68603785 + (CA)n Simple_repeat Simple_repeat 2 51 0 2942 196 51 111 chr13 51141113 51141454 -68603444 + L1M4 LINE L1 814 1174 -5368 1918 121 7 36 chr13 51141454 51141761 -68603137 - AluJo SINE Alu -14 298 1 2942 196 51 111 chr13 51141761 51141917 -68602981 + L1M4 LINE L1 1174 1226 -5316 1752 161 23 20 chr13 51141917 51142216 -68602682 + AluJb SINE Alu 1 300 -12 2942 196 51 111 chr13 51142216 51142260 -68602638 + L1M4 LINE L1 1226 1271 -5271 189 171 0 0 chr13 51142277 51142312 -68602586 + (TA)n Simple_repeat Simple_repeat 1 35 0 304 218 35 46 chr13 51142327 51142414 -68602484 + L1MC4 LINE L1 6617 6702 -1340 2019 176 44 63 chr13 51142497 51142975 -68601923 + L1MA9 LINE L1 5741 6209 -103 1787 199 73 11 chr13 51142996 51143433 -68601465 + L1M4 LINE L1 1307 1770 -4876 183 352 0 14 chr13 51144092 51144163 -68600735 - L2 LINE L2 -3 3269 3200 200 295 13 0 chr13 51145110 51145188 -68599710 - L2 LINE L2 -829 2485 2407 384 59 0 0 chr13 51145218 51145269 -68599629 + (CA)n Simple_repeat Simple_repeat 1 51 0 291 211 32 11 chr13 51145621 51145716 -68599182 + CT-rich Low_complexity Low_complexity 1 97 0 529 236 106 13 chr13 51146008 51146330 -68598568 - L1ME2 LINE L1 -213 5951 5584 291 338 12 23 chr13 51148739 51148938 -68595960 - MIR SINE MIR -50 212 20 243 277 69 30 chr13 51150649 51150750 -68594148 - MIR3 SINE MIR -6 202 98 2446 74 0 0 chr13 51151050 51151346 -68593552 - AluSg SINE Alu -14 296 1 283 269 43 21 chr13 51151658 51151751 -68593147 + MER65A LTR ERV1 1 95 -350 1509 287 88 20 chr13 51152040 51152598 -68592300 + HAL1 LINE L1 5 600 -1907 2305 181 102 40 chr13 51152624 51152754 -68592144 + MLT1F LTR MaLR 7 128 -414 1898 56 0 0 chr13 51152754 51152968 -68591930 - AluY SINE Alu -14 297 84 2305 181 102 40 chr13 51152968 51153339 -68591559 + MLT1F LTR MaLR 128 539 -3 534 16 0 0 chr13 51153347 51153410 -68591488 + (CA)n Simple_repeat Simple_repeat 2 64 0 4101 236 133 55 chr13 51153413 51155056 -68589842 + HAL1 LINE L1 567 2336 -171 333 263 0 0 chr13 51155057 51155133 -68589765 - MER5A DNA MER1_type 0 189 114 300 422 14 0 chr13 51155130 51155348 -68589550 + L2 LINE L2 2863 3083 -189 * 1133 292 113 27 chr13 51155440 51155926 -68588972 + LTR67 LTR ERVL 18 545 -12 276 306 28 46 chr13 51155928 51156036 -68588862 + L2 LINE L2 3166 3271 -1 802 226 80 19 chr13 51156679 51156891 -68588007 - MIR SINE MIR -18 244 20 351 209 58 0 chr13 51158895 51158981 -68585917 + L2 LINE L2 3169 3259 -13 1913 138 33 74 chr13 51159493 51159710 -68585188 - THE1C LTR MaLR 0 375 151 2122 108 0 0 chr13 51159710 51159989 -68584909 + AluY SINE Alu 1 279 -32 195 42 0 0 chr13 51159991 51160015 -68584883 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1913 138 33 74 chr13 51160015 51160185 -68584713 - THE1C LTR MaLR -225 150 1 189 0 0 0 chr13 51161838 51161859 -68583039 + (A)n Simple_repeat Simple_repeat 1 21 0 1055 82 0 7 chr13 51162368 51162514 -68582384 + L1PB1 LINE L1 6005 6149 -2 207 375 0 0 chr13 51162579 51162667 -68582231 + L3b LINE CR1 1172 1259 -324 2041 189 17 3 chr13 51163107 51163467 -68581431 + MLT1A1 LTR MaLR 1 365 0 192 264 0 0 chr13 51163705 51163758 -68581140 - L2 LINE L2 0 3313 3261 254 72 29 43 chr13 51164284 51164353 -68580545 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 750 258 149 69 chr13 51164376 51165333 -68579565 - LTR27 LTR ERV1 0 1755 7 739 286 36 0 chr13 51166211 51166435 -68578463 + MIR SINE MIR 29 260 -2 302 229 60 0 chr13 51166432 51166515 -68578383 + MIR SINE MIR 104 191 -71 * 377 272 39 0 chr13 51166601 51166704 -68578194 + MLT1L LTR MaLR 148 254 -361 2054 129 63 24 chr13 51166809 51167172 -68577726 - THE1C LTR MaLR 0 375 1 1065 234 8 0 chr13 51167881 51168129 -68576769 - MIR SINE MIR 0 262 13 2158 216 30 0 chr13 51168341 51168777 -68576121 + MER110 LTR ERV1 43 491 0 2397 87 0 3 chr13 51169609 51169908 -68574990 - AluSq SINE Alu -15 298 1 2421 97 0 3 chr13 51170196 51170507 -68574391 - AluSg SINE Alu 0 310 1 484 280 35 67 chr13 51170518 51170800 -68574098 - L1ME LINE L1 -298 5823 5551 1942 153 40 20 chr13 51170830 51171176 -68573722 + MLT1B LTR MaLR 1 353 -37 2284 107 3 0 chr13 51171205 51171503 -68573395 - AluSp SINE Alu -14 299 1 3050 108 9 14 chr13 51171754 51172188 -68572710 + MSTB1 LTR MaLR 1 432 0 737 88 20 0 chr13 51172217 51172319 -68572579 + LTR54B LTR ERV1 1 104 -394 710 217 53 0 chr13 51172322 51172511 -68572387 + LTR54 LTR ERV1 305 503 -7 317 263 97 59 chr13 51174048 51174234 -68570664 + LTR33A LTR ERVL 73 265 -258 503 208 167 46 chr13 51174309 51174525 -68570373 + LTR33A LTR ERVL 254 515 -6 453 266 121 85 chr13 51175701 51176066 -68568832 - MLT1K LTR MaLR -27 561 184 3976 101 2 0 chr13 51176244 51176770 -68568128 - MER1A DNA MER1_type 0 527 1 422 269 45 32 chr13 51178342 51178498 -68566400 + MER5B DNA MER1_type 1 158 -20 1372 230 53 98 chr13 51178508 51178783 -68566115 - LTR40a LTR ERVL -50 469 183 1591 172 92 0 chr13 51178783 51179056 -68565842 - AluJo SINE Alu -14 298 1 1372 230 53 98 chr13 51179056 51179187 -68565711 - LTR40a LTR ERVL -336 183 48 2367 107 0 0 chr13 51179187 51179487 -68565411 + AluSx SINE Alu 1 300 -12 2175 103 17 3 chr13 51179488 51179800 -68565098 + AluSc SINE Alu 1 309 0 1372 230 53 98 chr13 51179800 51179881 -68565017 - LTR40a LTR ERVL -470 49 1 4323 177 56 60 chr13 51180616 51180859 -68564039 + L1MB7 LINE L1 4190 4433 -1751 378 77 0 0 chr13 51180859 51180911 -68563987 + L1MA5 LINE L1 6246 6297 -3 4323 177 56 60 chr13 51180911 51182687 -68562211 + L1MB7 LINE L1 4433 6179 -5 229 303 62 56 chr13 51183505 51183700 -68561198 - L2 LINE L2 -1294 2020 1825 1316 209 18 33 chr13 51184071 51184401 -68560497 + MLT1F LTR MaLR 218 542 0 532 239 96 32 chr13 51184402 51184590 -68560308 - LTR16A1 LTR ERVL -254 203 4 342 0 0 0 chr13 51185600 51185638 -68559260 + (TG)n Simple_repeat Simple_repeat 2 39 0 273 167 0 0 chr13 51185851 51185905 -68558993 + (ATG)n Simple_repeat Simple_repeat 3 56 0 230 93 0 23 chr13 51186066 51186109 -68558789 + (ATG)n Simple_repeat Simple_repeat 3 44 0 1033 164 102 58 chr13 51186280 51186506 -68558392 + MER46A DNA MER2_type 1 236 0 857 224 52 14 chr13 51186569 51186779 -68558119 - MER20 DNA MER1_type -1 218 1 238 266 148 8 chr13 51188071 51188199 -68556699 + MIR SINE MIR 117 262 0 397 268 200 0 chr13 51188652 51188842 -68556056 + MLT1H LTR MaLR 1 228 -321 2708 191 16 29 chr13 51188925 51189479 -68555419 + MER74A LTR ERVL 3 549 -9 383 187 244 24 chr13 51192628 51192751 -68552147 + MLT1H LTR MaLR 396 545 -4 182 200 29 0 chr13 51193052 51193087 -68551811 + MIR SINE MIR 207 242 -20 655 275 171 21 chr13 51193399 51193935 -68550963 + L2 LINE L2 2689 3312 -1 224 370 14 0 chr13 51194425 51194498 -68550400 + L2 LINE L2 3199 3272 0 307 298 26 46 chr13 51195908 51196059 -68548839 - MIR SINE MIR -55 207 60 191 192 19 19 chr13 51196366 51196418 -68548480 + MER5A DNA MER1_type 4 55 -134 229 250 67 0 chr13 51196525 51196585 -68548313 + MIR SINE MIR 53 116 -146 1828 241 141 23 chr13 51196593 51197457 -68547441 - MER69B DNA AcHobo -1308 1218 201 2268 94 0 7 chr13 51197457 51197755 -68547143 + AluSc SINE Alu 1 296 -13 1828 241 141 23 chr13 51197755 51197954 -68546944 - MER69B DNA AcHobo -2325 201 27 293 276 51 83 chr13 51197994 51198150 -68546748 + MIR SINE MIR 111 261 -1 292 221 55 102 chr13 51199319 51199446 -68545452 + MIR3 SINE MIR 63 183 -25 1789 158 3 70 chr13 51200285 51200613 -68544285 - AluJb SINE Alu -6 306 1 306 204 68 11 chr13 51200940 51201028 -68543870 - L1ME4a LINE L1 -59 6062 5970 335 333 97 46 chr13 51201216 51201453 -68543445 - L1ME4a LINE L1 -269 5901 5653 189 256 132 70 chr13 51201458 51201587 -68543311 + L2 LINE L2 3130 3266 -47 303 175 0 0 chr13 51201596 51201653 -68543245 + GA-rich Low_complexity Low_complexity 2 58 0 187 290 0 0 chr13 51202093 51202155 -68542743 + L2 LINE L2 2694 2755 -559 351 282 91 64 chr13 51202324 51202544 -68542354 + L2 LINE L2 3077 3302 -11 255 61 0 0 chr13 51203570 51203603 -68541295 + (TG)n Simple_repeat Simple_repeat 2 34 0 579 171 0 27 chr13 51204086 51204197 -68540701 - AluJb SINE Alu -1 311 204 1987 194 97 0 chr13 51204252 51204706 -68540192 - MLT1D LTR MaLR 0 505 8 296 289 11 11 chr13 51205283 51205373 -68539525 + GA-rich Low_complexity Low_complexity 2 91 0 396 155 0 0 chr13 51205373 51205444 -68539454 + G-rich Low_complexity Low_complexity 4 74 0 870 119 0 0 chr13 51205949 51206075 -68538823 + FLAM_C SINE Alu 12 137 -6 255 217 14 14 chr13 51207160 51207229 -68537669 + (CA)n Simple_repeat Simple_repeat 2 70 0 437 154 65 14 chr13 51207555 51207839 -68537059 + (TG)n Simple_repeat Simple_repeat 1 298 0 220 180 0 33 chr13 51208268 51208329 -68536569 + G-rich Low_complexity Low_complexity 4 62 0 318 241 12 0 chr13 51208479 51208562 -68536336 + L1MA8 LINE L1 6208 6291 0 415 287 181 37 chr13 51209465 51209681 -68535217 - MIR SINE MIR 0 262 16 611 271 0 7 chr13 51210006 51210150 -68534748 - MIR SINE MIR -8 254 112 2256 117 0 0 chr13 51210582 51210872 -68534026 + AluSc SINE Alu 1 290 -19 201 300 193 20 chr13 51211337 51211487 -68533411 + MIR SINE MIR 8 183 -79 31 68 0 0 chr13 51212495 51212554 -68532344 + AT_rich Low_complexity Low_complexity 1 59 0 3659 67 11 60 chr13 51212782 51213316 -68531582 + L1PA7 LINE L1 5647 6154 0 624 206 16 0 chr13 51213702 51213828 -68531070 - MER94 DNA DNA -1 133 6 22 35 0 0 chr13 51214441 51214470 -68530428 + AT_rich Low_complexity Low_complexity 1 29 0 528 293 48 12 chr13 51214928 51215095 -68529803 + MIR SINE MIR 76 248 -14 221 182 36 18 chr13 51216880 51216935 -68527963 + L2 LINE L2 3214 3269 -3 1765 186 10 10 chr13 51218186 51218492 -68526406 - AluJo SINE Alu -6 306 1 204 274 91 70 chr13 51219531 51219717 -68525181 + L2 LINE L2 2580 2769 -545 503 258 107 22 chr13 51220934 51221159 -68523739 + L1ME4a LINE L1 5858 6101 -20 184 302 0 0 chr13 51221168 51221211 -68523687 + MIR SINE MIR 218 260 -2 2396 76 3 0 chr13 51221666 51221957 -68522941 - AluSp SINE Alu -2 311 20 2022 114 29 16 chr13 51222121 51222427 -68522471 + AluSq SINE Alu 4 313 0 186 305 60 109 chr13 51226831 51227215 -68517683 + L2 LINE L2 2612 2976 -338 192 358 15 0 chr13 51227473 51227540 -68517358 + L2 LINE L2 3245 3312 -1 801 266 11 0 chr13 51227671 51227848 -68517050 + MIR SINE MIR 33 211 -51 314 264 27 88 chr13 51228528 51228676 -68516222 + MIR SINE MIR 123 261 -1 375 276 129 45 chr13 51228704 51229106 -68515792 + L1ME4a LINE L1 5639 6074 -47 974 153 21 0 chr13 51230012 51230156 -68514742 - FAM SINE Alu -37 148 2 534 147 32 0 chr13 51230298 51230393 -68514505 - MER20 DNA MER1_type 0 219 122 2050 136 0 0 chr13 51230645 51230952 -68513946 + AluSx SINE Alu 3 309 0 1876 279 125 32 chr13 51232265 51233441 -68511457 - L2 LINE L2 0 3313 2029 234 313 12 0 chr13 51233493 51233576 -68511322 + L1ME2 LINE L1 6066 6149 -15 427 344 108 15 chr13 51233616 51233959 -68510939 - L2 LINE L2 -1344 1970 1596 342 240 60 73 chr13 51234221 51234371 -68510527 - MIR SINE MIR -23 239 92 257 290 16 0 chr13 51234533 51234595 -68510303 + MIR SINE MIR 200 262 0 * 281 338 56 56 chr13 51234592 51234752 -68510146 - L2 LINE L2 -1 3271 3112 348 313 81 51 chr13 51235882 51236435 -68508463 - L2 LINE L2 -151 3121 2565 388 336 83 22 chr13 51237753 51237982 -68506916 + MIR SINE MIR 2 244 -18 807 261 43 4 chr13 51238698 51238928 -68505970 + MIR SINE MIR 2 240 -22 27 0 0 0 chr13 51238944 51238971 -68505927 + AT_rich Low_complexity Low_complexity 1 27 0 1456 175 86 0 chr13 51241117 51241374 -68503524 + AluJo SINE Alu 1 279 -33 258 302 307 0 chr13 51243013 51243215 -68501683 + L2 LINE L2 2977 3240 -32 857 194 113 0 chr13 51243413 51243599 -68501299 - MER3 DNA MER1_type -2 207 1 271 362 34 0 chr13 51244088 51244237 -68500661 - MIR3 SINE MIR -30 178 25 2383 98 0 0 chr13 51244718 51245024 -68499874 + AluSq SINE Alu 1 306 -7 328 292 25 17 chr13 51245162 51245282 -68499616 + MIR SINE MIR 20 140 -122 1924 127 0 0 chr13 51245362 51245621 -68499277 + AluSq SINE Alu 1 259 -54 413 277 18 0 chr13 51247808 51247920 -68496978 - MIR SINE MIR -136 126 13 526 247 0 81 chr13 51250325 51250429 -68494469 + MER5B DNA MER1_type 18 104 -74 2120 99 4 0 chr13 51250429 51250702 -68494196 - AluSg SINE Alu 0 310 37 526 247 0 81 chr13 51250702 51250771 -68494127 + MER5B DNA MER1_type 104 177 -1 506 255 163 0 chr13 51250783 51250936 -68493962 - MER5A DNA MER1_type 0 189 12 542 216 142 17 chr13 51252422 51252598 -68492300 + LTR33A LTR ERVL 271 468 -55 875 162 27 22 chr13 51252788 51252973 -68491925 - MER53 DNA DNA -2 187 2 1737 164 3 30 chr13 51254297 51254601 -68490297 + AluJo SINE Alu 1 296 -16 23 0 0 0 chr13 51254601 51254624 -68490274 + AT_rich Low_complexity Low_complexity 1 23 0 1929 143 117 28 chr13 51254907 51255299 -68489599 + MSTC LTR MaLR 2 428 0 3268 108 13 4 chr13 51260776 51261246 -68483652 - Tigger3b DNA MER2_type -14 1217 744 832 137 16 16 chr13 51261266 51261390 -68483508 + FRAM SINE Alu 23 146 -30 4395 115 52 11 chr13 51261410 51262117 -68482781 - Tigger3b DNA MER2_type -478 753 18 404 312 104 35 chr13 51262221 51262596 -68482302 + L1MC4a LINE L1 4998 5398 -748 1182 231 104 22 chr13 51262622 51262986 -68481912 + L1MC4a LINE L1 5518 5911 -1897 859 227 152 45 chr13 51262991 51263321 -68481577 - MLT1G1 LTR MaLR -7 588 224 226 250 146 21 chr13 51263351 51263447 -68481451 - MLT1I LTR MaLR -234 175 68 26 0 0 0 chr13 51263701 51263727 -68481171 + AT_rich Low_complexity Low_complexity 1 26 0 232 195 184 35 chr13 51265292 51265379 -68479519 - MIR SINE MIR -111 151 52 1592 94 13 34 chr13 51266116 51266351 -68478547 - MER30 DNA MER1_type 0 230 1 245 94 0 0 chr13 51266744 51266776 -68478122 + L1P3 LINE L1 1046 1077 -5384 33080 102 11 55 chr13 51266857 51273294 -68471604 + L1PA7 LINE L1 12 6153 -1 192 217 11 98 chr13 51273334 51273426 -68471472 - MIR SINE MIR -59 203 120 189 75 125 25 chr13 51273550 51273590 -68471308 - L2 LINE L2 -3 3310 3267 22 0 0 0 chr13 51274104 51274126 -68470772 + AT_rich Low_complexity Low_complexity 1 22 0 49 52 0 0 chr13 51274301 51274378 -68470520 + AT_rich Low_complexity Low_complexity 1 77 0 495 265 141 17 chr13 51274479 51274770 -68470128 + L1MC4a LINE L1 5612 5938 -1870 2107 123 0 17 chr13 51275036 51275338 -68469560 + AluSc SINE Alu 3 299 -10 780 122 0 99 chr13 51275572 51275744 -68469154 + AluJb SINE Alu 150 304 -8 233 250 250 0 chr13 51276619 51276743 -68468155 + MIR SINE MIR 102 256 -6 2192 130 0 7 chr13 51276922 51277229 -68467669 + AluSx SINE Alu 1 305 -7 208 163 61 0 chr13 51277341 51277390 -68467508 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 1670 173 19 13 chr13 51277513 51277820 -68467078 + AluJb SINE Alu 2 310 -2 211 183 118 43 chr13 51277994 51278087 -68466811 - MIR SINE MIR -87 175 76 22 0 0 0 chr13 51278710 51278732 -68466166 + AT_rich Low_complexity Low_complexity 1 22 0 427 344 40 9 chr13 51283817 51284146 -68460752 + L2 LINE L2 1047 1385 -1929 1472 260 75 72 chr13 51284172 51284375 -68460523 + L2 LINE L2 2007 2208 -1105 2017 191 6 0 chr13 51284375 51284736 -68460162 - MLT1A1 LTR MaLR -2 363 1 1472 260 75 72 chr13 51284736 51284967 -68459931 + L2 LINE L2 2208 2437 -876 1852 166 3 0 chr13 51284967 51285251 -68459647 + AluJb SINE Alu 3 287 -25 1472 260 75 72 chr13 51285251 51286023 -68458875 + L2 LINE L2 2437 3214 -99 1749 156 0 27 chr13 51286023 51286324 -68458574 - AluJb SINE Alu -19 293 1 1472 260 75 72 chr13 51286324 51286423 -68458475 + L2 LINE L2 3214 3311 -2 1561 154 38 30 chr13 51286506 51286772 -68458126 + AluJb SINE Alu 1 268 -44 379 83 42 14 chr13 51286786 51286858 -68458040 + G-rich Low_complexity Low_complexity 4 77 0 358 298 80 35 chr13 51286963 51287270 -68457628 - L2 LINE L2 -230 3083 2768 1571 183 25 11 chr13 51287356 51287641 -68457257 - Tigger1 DNA MER2_type 0 2418 2130 * 4401 121 55 19 chr13 51287630 51288334 -68456564 - Tigger1 DNA MER2_type -1665 753 24 562 236 103 24 chr13 51288356 51288558 -68456340 - Charlie8 DNA MER1_type -1022 1395 81 244 333 11 86 chr13 51288563 51288640 -68456258 + MLT1J LTR MaLR 150 208 -303 2221 88 3 14 chr13 51288640 51288934 -68455964 + AluSx SINE Alu 1 291 -21 244 333 11 86 chr13 51288934 51289030 -68455868 + MLT1J LTR MaLR 208 310 -201 1084 150 19 184 chr13 51289060 51289434 -68455464 + MER93b LTR ERV1 1 312 -61 3164 199 24 53 chr13 51289439 51290460 -68454438 - MLT-int LTR MaLR -651 1084 1 3218 60 10 2 chr13 51290482 51290880 -68454018 + MER9 LTR ERVK 1 401 -110 255 299 209 35 chr13 51291343 51291711 -68453187 + L2 LINE L2 2841 3272 0 398 243 24 15 chr13 51291960 51292091 -68452807 + MIR SINE MIR 35 166 -42 244 224 26 13 chr13 51292081 51292157 -68452741 + L2 LINE L2 2830 2906 -366 * 2209 207 69 131 chr13 51292183 51292722 -68452176 - MER21B LTR ERV1 -48 815 349 2170 113 0 3 chr13 51292722 51293023 -68451875 + AluSc SINE Alu 1 300 -9 2209 207 69 131 chr13 51293023 51293352 -68451546 - MER21B LTR ERV1 -514 349 1 347 273 153 28 chr13 51293355 51293531 -68451367 + L2 LINE L2 2923 3120 -193 1342 167 5 9 chr13 51293533 51293777 -68451121 - AluJo SINE Alu 0 305 63 496 200 73 98 chr13 51293778 51293824 -68451074 + L2 LINE L2 3111 3157 -156 2767 149 126 22 chr13 51293824 51294362 -68450536 + LTR49 LTR ERV1 1 594 -1 496 200 73 98 chr13 51294362 51294520 -68450378 + L2 LINE L2 3157 3310 -3 385 208 23 100 chr13 51294515 51294645 -68450253 + MIR SINE MIR 138 257 -5 * 370 274 169 16 chr13 51295008 51295263 -68449635 + L1MC4a LINE L1 5607 5900 -1908 349 203 63 25 chr13 51295353 51295432 -68449466 + L2 LINE L2 3186 3267 -5 399 212 119 8 chr13 51297692 51297810 -68447088 - L1ME4a LINE L1 -28 6093 5963 573 236 115 0 chr13 51298449 51298597 -68446301 + Charlie1a DNA MER1_type 1 165 -1290 1958 149 41 80 chr13 51298604 51299120 -68445778 + Charlie1a DNA MER1_type 885 1380 -75 297 119 0 119 chr13 51299120 51299187 -68445711 + MER20 DNA MER1_type 1 59 -160 1125 143 0 28 chr13 51299190 51299372 -68445526 - FRAM SINE Alu -8 168 1 729 178 47 8 chr13 51299375 51299504 -68445394 + MER20 DNA MER1_type 86 219 0 277 132 0 38 chr13 51299507 51299560 -68445338 + Charlie1a DNA MER1_type 1376 1426 -29 1870 153 10 27 chr13 51299783 51300084 -68444814 + AluJo SINE Alu 1 296 -16 2658 83 6 3 chr13 51300135 51300483 -68444415 + THE1A LTR MaLR 1 349 -6 12589 89 2 1 chr13 51300491 51302068 -68442830 + THE1A-int LTR MaLR 2 1580 0 2855 96 0 3 chr13 51302068 51302424 -68442474 + THE1A LTR MaLR 1 355 0 351 318 56 0 chr13 51302787 51302894 -68442004 - L2 LINE L2 -7 3265 3153 2550 69 0 0 chr13 51303879 51304183 -68440715 - AluY SINE Alu -7 304 1 1581 180 58 10 chr13 51304323 51304617 -68440281 + AluJb SINE Alu 3 310 -2 645 239 130 29 chr13 51305595 51305833 -68439065 - L2 LINE L2 -5 3308 3047 579 250 23 10 chr13 51305874 51306040 -68438858 - MIR SINE MIR -12 250 2 454 323 45 14 chr13 51306067 51306290 -68438608 - L2 LINE L2 -337 2977 2748 1104 269 32 27 chr13 51306337 51306745 -68438153 - MLT1G LTR MaLR -132 435 21 2001 143 0 19 chr13 51306748 51307056 -68437842 + AluSx SINE Alu 3 304 -8 274 263 25 12 chr13 51307090 51307170 -68437728 - L2 LINE L2 -593 2721 2641 * 290 290 65 111 chr13 51307168 51307358 -68437540 + L2 LINE L2 3066 3246 -26 1967 90 135 0 chr13 51307358 51307625 -68437273 - AluSp SINE Alu 0 303 1 290 290 65 111 chr13 51307625 51307651 -68437247 + L2 LINE L2 3246 3272 0 1505 83 29 0 chr13 51308069 51308273 -68436625 + AluSp SINE Alu 91 300 -13 553 118 0 0 chr13 51308344 51308429 -68436469 - AluSp/q SINE Alu -2 311 227 1393 90 0 0 chr13 51308455 51308632 -68436266 - AluSg/x SINE Alu -10 302 126 850 237 37 47 chr13 51309765 51310012 -68434886 - MIR SINE MIR 0 262 19 412 300 21 50 chr13 51310031 51310171 -68434727 + MER5A DNA MER1_type 54 189 0 262 247 108 44 chr13 51310787 51310945 -68433953 - L2 LINE L2 -166 3106 2939 686 312 168 35 chr13 51311118 51312039 -68432859 - L2 LINE L2 -650 2664 1621 523 216 0 0 chr13 51312137 51312234 -68432664 + MER105 DNA DNA 65 161 -43 883 153 0 8 chr13 51312638 51312769 -68432129 + FLAM_C SINE Alu 1 130 -3 305 266 12 92 chr13 51316367 51316560 -68428338 + MIR3 SINE MIR 2 181 -69 2158 111 16 7 chr13 51316603 51316909 -68427989 + AluSq SINE Alu 1 309 -4 392 337 30 57 chr13 51317401 51317606 -68427292 - MIR3 SINE MIR -7 201 3 1707 129 3 111 chr13 51319167 51319508 -68425390 - AluJb SINE Alu -7 305 2 228 67 0 0 chr13 51319532 51319562 -68425336 + (T)n Simple_repeat Simple_repeat 1 30 0 203 223 181 64 chr13 51320292 51320386 -68424512 - L2 LINE L2 0 3272 3168 2122 183 62 56 chr13 51320607 51321109 -68423789 - MLT1D LTR MaLR 0 505 1 2060 102 11 4 chr13 51321125 51321400 -68423498 - AluSq SINE Alu -8 305 29 474 280 70 32 chr13 51322166 51322304 -68422594 - MIR SINE MIR -17 245 97 2706 14 0 0 chr13 51322304 51322597 -68422301 + AluY SINE Alu 1 293 -18 474 280 70 32 chr13 51322597 51322644 -68422254 - MIR SINE MIR -165 97 53 1700 102 17 4 chr13 51322770 51323006 -68421892 + AluSg/x SINE Alu 66 304 -8 291 299 32 32 chr13 51323079 51323233 -68421665 - L2 LINE L2 -1359 1955 1802 772 200 30 0 chr13 51323236 51323371 -68421527 - AluJo SINE Alu -145 167 29 897 140 0 7 chr13 51323372 51323508 -68421390 + AluJo/FRAM SINE Alu 168 302 -10 319 335 148 19 chr13 51323509 51324049 -68420849 - L2 LINE L2 -1504 1810 1201 1106 274 155 42 chr13 51324167 51324486 -68420412 - L1MEd LINE L1 -4866 1253 971 2025 184 11 43 chr13 51324486 51324744 -68420154 + MLT1A1 LTR MaLR 1 245 -120 2227 106 7 3 chr13 51324744 51325047 -68419851 - AluSq SINE Alu -9 304 1 2025 184 11 43 chr13 51325047 51325163 -68419735 + MLT1A1 LTR MaLR 245 363 -2 1106 274 155 42 chr13 51325163 51325671 -68419227 - L1MEd LINE L1 -5148 971 333 408 265 118 91 chr13 51325763 51326125 -68418773 + L1MEd LINE L1 671 1053 -5066 2443 69 0 0 chr13 51326125 51326416 -68418482 + AluSq SINE Alu 18 308 -5 408 265 118 91 chr13 51326416 51326578 -68418320 + L1MEd LINE L1 1053 1209 -4910 360 272 184 27 chr13 51326594 51326969 -68417929 + L1MEd LINE L1 1220 1653 -4476 31 26 0 0 chr13 51327029 51327067 -68417831 + AT_rich Low_complexity Low_complexity 1 38 0 416 237 70 59 chr13 51327086 51327272 -68417626 + L1MC5 LINE L1 7738 7925 -36 279 300 77 20 chr13 51327576 51327873 -68417025 + L1MEd LINE L1 2093 2406 -3723 2398 97 0 3 chr13 51327919 51328229 -68416669 + AluSg1 SINE Alu 1 309 0 767 213 97 11 chr13 51328287 51328555 -68416343 + L1ME1 LINE L1 5180 5613 -553 3272 71 28 0 chr13 51328557 51328979 -68415919 + MLT2A1 LTR ERVL 1 434 -10 1053 174 7 109 chr13 51328981 51329274 -68415624 + L1ME1 LINE L1 5603 5865 -301 2172 52 8 4 chr13 51329793 51330061 -68414837 - AluY SINE Alu -11 300 32 2596 50 0 0 chr13 51330337 51330640 -68414258 + AluY SINE Alu 1 303 -8 2392 86 0 0 chr13 51330650 51330942 -68413956 + AluSg SINE Alu 7 298 -12 31 58 0 0 chr13 51330987 51331039 -68413859 + AT_rich Low_complexity Low_complexity 1 52 0 1803 183 0 16 chr13 51331053 51331365 -68413533 + AluJo SINE Alu 6 312 0 1349 165 0 30 chr13 51331367 51331597 -68413301 + AluJb SINE Alu 73 295 -17 891 262 120 23 chr13 51331656 51332105 -68412793 + L1MC/D LINE L1 5174 5660 -754 1790 123 7 68 chr13 51332395 51332704 -68412194 + AluJo SINE Alu 1 290 -22 269 186 291 0 chr13 51332731 51332817 -68412081 + L1M4 LINE L1 4235 4345 -1801 1861 146 0 0 chr13 51332846 51333140 -68411758 + L1MA5A LINE L1 6004 6297 0 911 126 0 15 chr13 51333146 51333281 -68411617 + AluJb SINE Alu 4 136 -176 3486 110 9 38 chr13 51333432 51333985 -68410913 + L1MA8 LINE L1 5750 6286 -5 1855 162 0 3 chr13 51333994 51334302 -68410596 + AluJo SINE Alu 1 307 0 242 278 30 104 chr13 51334303 51334425 -68410473 + L1M4 LINE L1 4529 4658 -1488 1592 39 133 0 chr13 51334425 51334628 -68410270 + MER30 DNA MER1_type 1 230 0 242 278 30 104 chr13 51334628 51334843 -68410055 + L1M4 LINE L1 4658 4841 -1305 2482 94 0 0 chr13 51335562 51335871 -68409027 - AluSg SINE Alu -1 309 1 3788 179 87 58 chr13 51335923 51336511 -68408387 + MER31-int LTR ERV1 1601 2227 -4104 4982 73 24 37 chr13 51336511 51337184 -68407714 + MER4A LTR ERV1 1 664 0 3788 179 87 58 chr13 51337184 51337511 -68407387 + MER31-int LTR ERV1 2227 2543 -3788 552 281 138 35 chr13 51337523 51337754 -68407144 + MER34C LTR ERV1 160 414 -171 498 179 7 189 chr13 51337754 51337872 -68407026 + MER31-int LTR ERV1 1096 1234 -5963 1955 122 48 0 chr13 51337872 51338174 -68406724 + AluSx SINE Alu 1 315 0 498 179 7 189 chr13 51338174 51338279 -68406619 + MER31-int LTR ERV1 1234 3506 -3691 1017 254 61 85 chr13 51338299 51338794 -68406104 + LTR38 LTR ERV1 66 545 -11 1135 205 60 41 chr13 51338804 51339170 -68405728 + MER31-int LTR ERV1 1445 1817 -3306 817 211 0 0 chr13 51339174 51339326 -68405572 - FRAM SINE Alu -12 164 13 38832 29 23 2 chr13 51339362 51344848 -68400050 + L1PA3 LINE L1 576 6182 0 311 256 87 76 chr13 51344854 51345143 -68399755 + MER31-int LTR ERV1 1686 1977 -2959 2201 93 31 0 chr13 51345208 51345499 -68399399 - AluSq SINE Alu -13 300 1 823 166 45 13 chr13 51345719 51345876 -68399022 - FRAM SINE Alu -13 163 2 2156 144 37 3 chr13 51345918 51346244 -68398654 - MER1B DNA MER1_type 0 337 1 330 301 122 0 chr13 51346859 51346982 -68397916 - MIR3 SINE MIR -5 203 66 2338 105 13 0 chr13 51347268 51347572 -68397326 - AluSg SINE Alu -2 308 1 6092 78 21 23 chr13 51347882 51348750 -68396148 + SVA Other Other 1 866 -520 5689 63 4 18 chr13 51349186 51349905 -68394993 + SVA Other Other 678 1386 0 543 253 151 42 chr13 51350741 51351192 -68393706 - L1ME4a LINE L1 -30 6091 5592 2431 75 0 3 chr13 51351288 51351583 -68393315 + AluSc SINE Alu 1 294 -15 253 278 87 51 chr13 51351622 51351956 -68392942 - L1ME4a LINE L1 -1127 5019 4674 1544 185 51 67 chr13 51352056 51352441 -68392457 + MER61E LTR ERV1 1 391 -403 1973 146 0 44 chr13 51352441 51352756 -68392142 - AluSx SINE Alu -11 301 1 1544 185 51 67 chr13 51352756 51353080 -68391818 + MER61E LTR ERV1 391 787 -7 288 53 0 0 chr13 51353223 51353261 -68391637 + (CA)n Simple_repeat Simple_repeat 2 39 0 267 182 9 181 chr13 51353353 51353451 -68391447 + L1P5 LINE L1 5285 5340 -826 2300 89 10 16 chr13 51353451 51353765 -68391133 + AluSx SINE Alu 1 312 0 267 182 9 181 chr13 51353765 51353860 -68391038 + L1P5 LINE L1 5340 5450 -716 211 325 126 26 chr13 51354219 51354490 -68390408 + L2 LINE L2 2206 2503 -811 2173 118 53 28 chr13 51355142 51355497 -68389401 + THE1B LTR MaLR 1 364 0 401 233 101 73 chr13 51355596 51355815 -68389083 - MIR SINE MIR -9 253 29 2189 128 20 69 chr13 51355942 51356334 -68388564 + MER83C LTR ERV1 1 373 0 2105 127 0 10 chr13 51358073 51358380 -68386518 - AluSc SINE Alu -5 304 1 5838 99 24 33 chr13 51358423 51360424 -68384474 + L1PA16 LINE L1 4168 6161 -5 446 241 56 43 chr13 51361392 51361554 -68383344 + L2 LINE L2 2142 2305 -1009 451 332 104 11 chr13 51361569 51361924 -68382974 - L2 LINE L2 -4 3309 2922 1053 261 21 73 chr13 51362008 51362380 -68382518 + L1MEc LINE L1 34 386 -6010 * 2284 204 26 76 chr13 51362376 51362557 -68382341 + L1ME1 LINE L1 5514 5702 -464 2324 98 7 0 chr13 51362557 51362853 -68382045 + AluSp SINE Alu 1 298 -15 2284 204 26 76 chr13 51362853 51363354 -68381544 + L1ME1 LINE L1 5702 6162 -4 306 0 0 0 chr13 51364051 51364085 -68380813 + (TCTCCC)n Simple_repeat Simple_repeat 1 34 0 6117 67 22 5 chr13 51364085 51364890 -68380008 + SVA Other Other 50 868 -518 6036 64 7 141 chr13 51364939 51366042 -68378856 + SVA Other Other 430 1384 -2 258 192 0 0 chr13 51366042 51366094 -68378804 + L1MB2 LINE L1 6120 6171 0 700 158 61 0 chr13 51366498 51366612 -68378286 - FLAM_A SINE Alu -12 130 10 249 274 7 89 chr13 51366691 51366826 -68378072 - L1ME4a LINE L1 -23 6098 5975 22 0 0 0 chr13 51367108 51367130 -68377768 + AT_rich Low_complexity Low_complexity 1 22 0 2334 87 3 0 chr13 51367172 51367460 -68377438 + AluSq SINE Alu 4 292 -21 355 241 103 86 chr13 51367881 51368010 -68376888 + MER5B DNA MER1_type 1 135 -43 2221 101 3 0 chr13 51368010 51368297 -68376601 + AluSc SINE Alu 9 296 -13 355 241 103 86 chr13 51368297 51368341 -68376557 + MER5B DNA MER1_type 135 177 -1 2422 88 0 0 chr13 51368677 51368971 -68375927 - AluY SINE Alu -17 294 1 1582 170 48 4 chr13 51369370 51369640 -68375258 - AluJo SINE Alu -16 296 15 255 287 20 59 chr13 51369642 51369664 -68375234 + MIR SINE MIR 22 43 -219 1793 163 40 10 chr13 51369664 51369845 -68375053 - AluJo SINE Alu -2 310 136 453 19 0 0 chr13 51369845 51369899 -68374999 + (GA)n Simple_repeat Simple_repeat 2 55 0 * 486 0 0 0 chr13 51369898 51369952 -68374946 + (TG)n Simple_repeat Simple_repeat 2 55 0 1793 163 40 10 chr13 51369899 51370071 -68374827 - AluJo SINE Alu -176 136 1 255 287 20 59 chr13 51370071 51370149 -68374749 + MIR SINE MIR 43 118 -144 2343 131 22 8 chr13 51370176 51370535 -68374363 + THE1B LTR MaLR 1 364 0 2163 187 37 15 chr13 51371774 51372229 -68372669 + MLT1C LTR MaLR 3 467 0 2139 120 7 0 chr13 51372768 51373060 -68371838 - AluY SINE Alu -17 294 1 1994 147 0 3 chr13 51373060 51373352 -68371546 - AluJo SINE Alu -9 303 13 2382 102 0 0 chr13 51373385 51373688 -68371210 - AluSg SINE Alu -7 303 1 337 283 40 4 chr13 51373729 51373867 -68371031 - MIR3 SINE MIR -5 203 60 2284 105 3 13 chr13 51374101 51374416 -68370482 + AluSx SINE Alu 1 312 0 2015 106 84 0 chr13 51374998 51375282 -68369616 + AluSg SINE Alu 1 308 -2 250 255 88 20 chr13 51375742 51375844 -68369054 + MIR SINE MIR 110 218 -44 2356 88 0 3 chr13 51376036 51376332 -68368566 + AluY SINE Alu 1 295 -16 449 178 0 0 chr13 51377736 51377809 -68367089 + AluS SINE Alu 2 74 -238 2114 133 7 3 chr13 51377896 51378197 -68366701 + AluSx SINE Alu 1 302 -10 2261 109 0 3 chr13 51378570 51378864 -68366034 + AluSx SINE Alu 1 293 -19 305 151 0 140 chr13 51379762 51379794 -68365104 + MER116 DNA Mariner 1 36 -44 2143 81 46 14 chr13 51379794 51380077 -68364821 + AluY SINE Alu 1 292 -19 305 151 0 140 chr13 51380077 51380137 -68364761 + MER116 DNA Mariner 36 80 0 1592 164 6 69 chr13 51380206 51380524 -68364374 - AluJo SINE Alu -11 301 4 365 145 11 121 chr13 51380898 51381153 -68363745 + AluJb SINE Alu 1 282 -43 1838 141 187 8 chr13 51381153 51381516 -68363382 + MSTA LTR MaLR 1 428 0 9290 166 37 2 chr13 51381520 51383112 -68361786 + MSTA-int LTR MaLR 5 1651 0 2172 128 150 5 chr13 51383112 51383486 -68361412 + MSTA LTR MaLR 1 428 0 365 145 11 121 chr13 51383486 51383597 -68361301 + AluJb SINE Alu 283 325 0 1870 88 15 0 chr13 51384244 51384505 -68360393 + L1MA1 LINE L1 6034 6298 -4 23 0 0 0 chr13 51384505 51384528 -68360370 + AT_rich Low_complexity Low_complexity 1 23 0 1075 115 0 0 chr13 51384543 51384682 -68360216 + AluSg SINE Alu 1 139 -171 2286 86 0 0 chr13 51384682 51384985 -68359913 + AluSc SINE Alu 1 303 0 1633 180 11 0 chr13 51385554 51385838 -68359060 - AluSx SINE Alu -10 302 16 896 132 0 16 chr13 51385884 51386013 -68358885 + FLAM_C SINE Alu 1 127 -16 2460 57 0 7 chr13 51386409 51386706 -68358192 + AluY SINE Alu 1 295 -16 1838 149 0 17 chr13 51387717 51388005 -68356893 + AluJb SINE Alu 20 302 -10 2181 110 0 7 chr13 51388439 51388730 -68356168 + AluSx SINE Alu 1 289 -23 2198 190 47 14 chr13 51388802 51389229 -68355669 + MER68 LTR ERV1 1 441 -121 2113 107 7 10 chr13 51389265 51389555 -68355343 - AluSx SINE Alu -23 289 1 330 67 0 0 chr13 51390522 51390567 -68354331 + (TG)n Simple_repeat Simple_repeat 2 46 0 782 178 0 8 chr13 51390683 51390812 -68354086 - FLAM_C SINE Alu -5 128 1 806 143 38 23 chr13 51391158 51391291 -68353607 - AluJo SINE Alu -176 136 2 2216 114 0 3 chr13 51391776 51392073 -68352825 + AluSx SINE Alu 1 296 -16 513 239 148 14 chr13 51392125 51392267 -68352631 - MIR3 SINE MIR -21 187 27 4929 68 12 18 chr13 51392506 51392603 -68352295 + PABL_A LTR ERV1 1 97 -563 2201 116 7 3 chr13 51392603 51392904 -68351994 + AluSq SINE Alu 1 302 -11 4929 68 12 18 chr13 51392904 51393470 -68351428 + PABL_A LTR ERV1 97 660 0 22 0 0 0 chr13 51393701 51393723 -68351175 + AT_rich Low_complexity Low_complexity 1 22 0 404 235 59 0 chr13 51394013 51394132 -68350766 - L1ME4a LINE L1 -40 6081 5956 5004 138 39 32 chr13 51394441 51395336 -68349562 + MER4D LTR ERV1 1 901 -2 222 37 0 0 chr13 51395958 51395985 -68348913 + (CA)n Simple_repeat Simple_repeat 2 28 0 225 271 0 0 chr13 51396035 51396083 -68348815 - MIR SINE MIR -108 154 107 21 0 0 0 chr13 51396711 51396732 -68348166 + AT_rich Low_complexity Low_complexity 1 21 0 989 214 17 34 chr13 51397718 51397956 -68346942 + MIR SINE MIR 29 262 0 23 0 0 0 chr13 51398752 51398775 -68346123 + AT_rich Low_complexity Low_complexity 1 23 0 1960 157 48 8 chr13 51398998 51399349 -68345549 + MLT1A1 LTR MaLR 1 365 0 218 280 67 13 chr13 51399439 51399514 -68345384 + L2 LINE L2 3190 3268 -4 2342 46 42 3 chr13 51400308 51400593 -68344305 - AluY SINE Alu -15 296 1 3189 138 41 18 chr13 51400792 51401406 -68343492 + MER11A LTR ERVK 638 1265 -1 210 241 35 0 chr13 51404178 51404236 -68340662 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 213 39 0 0 chr13 51405576 51405602 -68339296 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 183 0 24 chr13 51405606 51405688 -68339210 + (TA)n Simple_repeat Simple_repeat 2 81 0 301 302 0 38 chr13 51405694 51405800 -68339098 + L1MC4 LINE L1 6614 6715 -1327 213 202 12 24 chr13 51405846 51405930 -68338968 + (TA)n Simple_repeat Simple_repeat 1 83 0 5857 140 48 56 chr13 51405946 51406126 -68338772 + Tigger1 DNA MER2_type 1 181 -2237 2176 91 3 0 chr13 51406126 51406412 -68338486 - AluSg SINE Alu -23 287 1 5857 140 48 56 chr13 51406412 51407423 -68337475 + Tigger1 DNA MER2_type 181 1182 -1236 7386 178 38 122 chr13 51407424 51410684 -68334214 + L1M2c LINE L1 14 2745 -4043 2215 113 0 0 chr13 51410684 51410984 -68333914 + AluY SINE Alu 3 302 -9 7386 178 38 122 chr13 51410984 51412402 -68332496 + L1M2c LINE L1 2745 4281 -2507 2968 151 2 8 chr13 51412407 51412917 -68331981 + Tigger1 DNA MER2_type 1911 2417 -1 368 252 115 3 chr13 51414841 51415040 -68329858 - L1MC/D LINE L1 -364 5757 5609 2103 114 27 3 chr13 51415940 51416239 -68328659 - AluSc SINE Alu -3 306 1 355 295 74 19 chr13 51416782 51417040 -68327858 - HAL1b LINE L1 -609 739 468 5234 105 8 21 chr13 51417487 51417824 -68327074 - L1PA14 LINE L1 -2 6159 5819 2268 89 0 10 chr13 51417824 51418126 -68326772 - AluY SINE Alu -12 299 1 5234 105 8 21 chr13 51418126 51418627 -68326271 - L1PA14 LINE L1 -342 5819 5332 200 246 18 35 chr13 51419081 51419138 -68325760 - MIR SINE MIR -62 146 91 1881 143 0 0 chr13 51419637 51419910 -68324988 + AluSx SINE Alu 1 273 -39 213 121 0 0 chr13 51421035 51421068 -68323830 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2039 93 0 0 chr13 51421286 51421543 -68323355 + AluSg SINE Alu 33 289 -21 13289 136 36 18 chr13 51421568 51423883 -68321015 + L1MA2 LINE L1 1252 3635 -3930 2240 117 0 0 chr13 51423883 51424191 -68320707 + AluSc SINE Alu 1 308 -1 13289 136 36 18 chr13 51424191 51424445 -68320453 + L1MA2 LINE L1 3635 3883 -3682 8704 155 25 10 chr13 51424468 51424641 -68320257 + L1MA2 LINE L1 4943 5112 -2611 2153 132 3 0 chr13 51424641 51424945 -68319953 + AluSx SINE Alu 1 305 -7 8704 155 25 10 chr13 51424945 51427436 -68317462 + L1MA2 LINE L1 5112 7651 -72 306 150 67 0 chr13 51428137 51428197 -68316701 + U2 snRNA snRNA 6 69 -119 1791 15 0 0 chr13 51428387 51428591 -68316307 - L1PA2 LINE L1 -2 6153 5950 2179 128 3 3 chr13 51428599 51428911 -68315987 - AluSx SINE Alu 0 312 1 666 233 33 61 chr13 51429295 51429475 -68315423 + MER5A DNA MER1_type 14 188 -1 302 238 12 48 chr13 51430066 51430150 -68314748 + MER21B LTR ERV1 3 83 -780 2125 100 0 0 chr13 51431105 51431386 -68313512 - AluSx SINE Alu -26 286 6 1098 142 39 34 chr13 51431730 51431935 -68312963 - AluJo SINE Alu -106 206 1 303 173 254 9 chr13 51431935 51432045 -68312853 - L1MB8 LINE L1 -269 5909 5773 5259 102 66 19 chr13 51432055 51432992 -68311906 - L1MA4A LINE L1 -1 7004 6024 937 195 0 0 chr13 51433005 51433164 -68311734 - AluJb SINE Alu -23 289 131 242 29 29 0 chr13 51433180 51433215 -68311683 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 437 171 0 13 chr13 51433219 51433295 -68311603 - AluJb SINE Alu -54 258 184 1402 182 115 7 chr13 51433296 51433565 -68311333 - AluJo SINE Alu -14 298 1 3012 190 28 9 chr13 51433565 51434240 -68310658 - L1MA4A LINE L1 -815 6033 5346 1961 137 7 0 chr13 51434353 51434646 -68310252 - AluSx SINE Alu -17 295 1 9364 178 13 30 chr13 51434646 51435667 -68309231 - L1MA4A LINE L1 -1844 5004 3967 1810 180 0 10 chr13 51435667 51435972 -68308926 - AluJo SINE Alu -8 304 3 9364 178 13 30 chr13 51435972 51436358 -68308540 - L1MA4A LINE L1 -2881 3967 3576 1895 161 0 10 chr13 51436358 51436649 -68308249 - AluJo SINE Alu -24 288 1 9364 178 13 30 chr13 51436649 51437206 -68307692 - L1MA4A LINE L1 -3272 3576 3090 2226 106 0 3 chr13 51437206 51437509 -68307389 - AluSg SINE Alu -8 302 1 9364 178 13 30 chr13 51437509 51438028 -68306870 - L1MA4A LINE L1 -3758 3090 2564 3161 216 90 35 chr13 51438030 51439053 -68305845 + L1M4 LINE L1 4015 5093 -1053 1455 230 84 94 chr13 51439053 51439680 -68305218 - L1MCa LINE L1 -5784 642 22 1204 196 56 11 chr13 51439686 51439972 -68304926 - L1MB8 LINE L1 -567 5599 5301 928 123 31 6 chr13 51440009 51440171 -68304727 - L1MA6 LINE L1 -6 6294 6129 201 149 15 90 chr13 51441437 51441504 -68303394 + A-rich Low_complexity Low_complexity 4 65 0 463 117 25 75 chr13 51443394 51443489 -68301409 + L1M2c LINE L1 1825 1923 -4866 1796 179 3 0 chr13 51443489 51443779 -68301119 + AluSx SINE Alu 1 291 -21 285 29 0 0 chr13 51443780 51443814 -68301084 + (TA)n Simple_repeat Simple_repeat 1 34 0 463 117 25 75 chr13 51443814 51443836 -68301062 + L1M2c LINE L1 1922 1938 -4851 2813 191 18 40 chr13 51443837 51443956 -68300942 + L1M2c LINE L1 2153 2273 -4515 1856 163 7 13 chr13 51443956 51444256 -68300642 + AluSg SINE Alu 1 298 -12 2813 191 18 40 chr13 51444256 51445269 -68299629 + L1M2c LINE L1 2273 3259 -3529 1383 118 48 0 chr13 51445275 51445504 -68299394 + L1MA5 LINE L1 6055 6294 -6 779 254 11 77 chr13 51445559 51445819 -68299079 - MLT1H LTR MaLR -235 314 72 2404 80 7 0 chr13 51445833 51446134 -68298764 - AluY SINE Alu -8 303 1 3070 259 37 33 chr13 51446538 51447560 -68297338 + L1PA12 LINE L1 10 1035 -6546 2390 65 3 37 chr13 51448090 51448412 -68296486 + AluY SINE Alu 1 311 0 432 0 0 0 chr13 51448412 51448460 -68296438 + (TA)n Simple_repeat Simple_repeat 2 49 0 2208 126 0 0 chr13 51449098 51449407 -68295491 - AluSg SINE Alu -1 309 1 6376 95 8 8 chr13 51449417 51450543 -68294355 - L1PA11 LINE L1 0 6174 5052 359 195 39 0 chr13 51450552 51450629 -68294269 - L1PA13 LINE L1 -5005 1782 1703 888 225 112 78 chr13 51451290 51451664 -68293234 + L1ME3A LINE L1 5779 6165 -5 2380 101 0 0 chr13 51451731 51452029 -68292869 + AluSg SINE Alu 1 298 -12 634 278 78 72 chr13 51452046 51452253 -68292645 + L1MC/D LINE L1 4798 5002 -1359 1429 175 36 68 chr13 51452253 51452561 -68292337 - AluJo SINE Alu -14 298 1 634 278 78 72 chr13 51452561 51452912 -68291986 + L1MC/D LINE L1 5002 5363 -998 1890 118 79 0 chr13 51452912 51453191 -68291707 + AluSg SINE Alu 1 301 -9 634 278 78 72 chr13 51453191 51453449 -68291449 + L1MC/D LINE L1 5363 5618 -743 414 0 0 0 chr13 51453556 51453608 -68291290 - L1PA2 LINE L1 -154 6001 5950 2195 125 3 3 chr13 51453616 51453928 -68290970 - AluSx SINE Alu 0 312 1 622 221 40 47 chr13 51454312 51454461 -68290437 + MER5A DNA MER1_type 14 161 -28 788 169 4 161 chr13 51454726 51454986 -68289912 - MER20 DNA MER1_type 0 219 1 516 181 24 127 chr13 51456339 51456505 -68288393 - MLT1H LTR MaLR -22 527 379 2267 235 20 46 chr13 51456609 51457350 -68287548 + L1M2c LINE L1 1193 1952 -4837 1796 179 3 0 chr13 51457350 51457640 -68287258 + AluSx SINE Alu 1 291 -21 432 0 0 0 chr13 51457641 51457689 -68287209 + (TA)n Simple_repeat Simple_repeat 1 48 0 2267 235 20 46 chr13 51457689 51457711 -68287187 + L1M2c LINE L1 1917 1938 -4851 2866 185 18 44 chr13 51457712 51457831 -68287067 + L1M2c LINE L1 2153 2274 -4514 1933 156 7 13 chr13 51457831 51458132 -68286766 + AluSg SINE Alu 1 299 -11 2866 185 18 44 chr13 51458132 51459149 -68285749 + L1M2c LINE L1 2274 3259 -3529 1166 109 57 0 chr13 51459155 51459348 -68285550 + L1MA5 LINE L1 6055 6258 -42 774 256 11 75 chr13 51459426 51459692 -68285206 - MLT1H LTR MaLR -228 321 73 2419 79 0 7 chr13 51459707 51460011 -68284887 - AluY SINE Alu -9 302 1 40975 32 22 0 chr13 51460357 51466374 -68278524 + L1PA2 LINE L1 2 6155 0 3094 259 37 33 chr13 51466445 51467467 -68277431 + L1PA12 LINE L1 10 1035 -6546 6118 95 9 6 chr13 51467487 51469150 -68275748 + L1PA11 LINE L1 4452 6157 -17 304 232 42 0 chr13 51469158 51469265 -68275633 - L1ME3 LINE L1 -3 6159 6049 2474 261 80 36 chr13 51469266 51469646 -68275252 - L1M4 LINE L1 -1138 5008 4646 351 0 0 0 chr13 51469646 51469685 -68275213 + (CA)n Simple_repeat Simple_repeat 2 40 0 2474 261 80 36 chr13 51469685 51469849 -68275049 - L1M4 LINE L1 -1500 4646 4491 2308 82 3 3 chr13 51469849 51470141 -68274757 - AluY SINE Alu -15 296 5 2474 261 80 36 chr13 51470141 51470284 -68274614 - L1M4 LINE L1 -1655 4491 4356 6609 63 7 0 chr13 51470284 51471922 -68272976 - L1PA8 LINE L1 -9 6163 4508 1295 164 103 46 chr13 51471926 51472207 -68272691 - AluJo SINE Alu -15 297 1 2474 261 80 36 chr13 51472207 51472805 -68272093 - L1M4 LINE L1 -1792 4354 3660 1768 5 0 0 chr13 51474474 51474674 -68270224 + L1PA2 LINE L1 5956 6155 0 573 152 0 20 chr13 51475084 51475235 -68269663 + (TA)n Simple_repeat Simple_repeat 1 148 0 2333 95 3 0 chr13 51475336 51475642 -68269256 - AluSg SINE Alu -3 307 1 310 247 0 0 chr13 51475857 51475930 -68268968 - L1ME LINE L1 -474 5647 5575 28695 41 4 2 chr13 51477979 51481691 -68263207 - L1P LINE L1 -2423 3723 7 290 333 20 0 chr13 51482399 51482498 -68262400 + GA-rich Low_complexity Low_complexity 2 102 0 4982 155 45 13 chr13 51482624 51484092 -68260806 - L1MA8 LINE L1 0 6291 4774 293 242 127 72 chr13 51484932 51485071 -68259827 - L1ME LINE L1 -847 5299 5169 1864 153 0 7 chr13 51485071 51485359 -68259539 - AluJb SINE Alu -21 291 6 293 242 127 72 chr13 51485359 51485620 -68259278 - L1ME LINE L1 -977 5169 4877 355 268 21 7 chr13 51485731 51485873 -68259025 - L1ME LINE L1 -1454 4692 4549 23 0 0 0 chr13 51485913 51485936 -68258962 + AT_rich Low_complexity Low_complexity 1 23 0 911 281 105 20 chr13 51486013 51486067 -68258831 - L1ME LINE L1 -399 5763 5715 2125 105 14 0 chr13 51486067 51486361 -68258537 - AluSx SINE Alu -14 298 1 911 281 105 20 chr13 51486361 51487345 -68257553 - L1ME LINE L1 -447 5715 4637 * 4895 97 4 0 chr13 51487343 51488056 -68256842 + L1P LINE L1 572 1287 -4859 10980 37 0 0 chr13 51488060 51490202 -68254696 + L1PA5 LINE L1 4030 6150 -4 1853 246 100 59 chr13 51490236 51490549 -68254349 - L1ME LINE L1 -1538 4608 4309 1795 155 6 32 chr13 51490549 51490865 -68254033 - AluJb SINE Alu -4 308 1 1853 246 100 59 chr13 51490865 51491101 -68253797 - L1ME LINE L1 -1837 4309 4084 261 0 0 0 chr13 51491101 51491130 -68253768 + (TG)n Simple_repeat Simple_repeat 1 29 0 1853 246 100 59 chr13 51491130 51491161 -68253737 - L1ME LINE L1 -2062 4084 4056 1711 162 44 3 chr13 51491161 51491458 -68253440 + AluSg SINE Alu 1 309 -1 1853 246 100 59 chr13 51491458 51492222 -68252676 - L1ME LINE L1 -2090 4056 3325 2358 71 0 0 chr13 51492222 51492505 -68252393 + AluY SINE Alu 1 314 0 280 0 0 0 chr13 51492505 51492536 -68252362 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1853 246 100 59 chr13 51492536 51492921 -68251977 - L1ME LINE L1 -2821 3325 2797 2406 81 3 0 chr13 51492921 51493219 -68251679 + AluSp SINE Alu 1 299 -14 1853 246 100 59 chr13 51493219 51493435 -68251463 - L1ME LINE L1 -3349 2797 2591 806 276 36 23 chr13 51493675 51493983 -68250915 - L1ME LINE L1 -1998 4148 3837 2550 43 0 3 chr13 51493993 51494292 -68250606 - AluY SINE Alu -13 298 1 13054 194 36 13 chr13 51494373 51499808 -68245090 - L1PA16 LINE L1 -9 6860 1307 2742 148 12 0 chr13 51499815 51500220 -68244678 - L1PA16 LINE L1 -6437 412 3 230 344 72 11 chr13 51500221 51500483 -68244415 - L1ME LINE L1 -2322 3824 3547 577 137 21 0 chr13 51500550 51500645 -68244253 + AluSg/x SINE Alu 204 300 -12 636 183 92 12 chr13 51500991 51501155 -68243743 + MER96B DNA MER1_type? 3 179 -238 322 219 169 97 chr13 51501664 51501757 -68243141 - MER112 DNA MER1_type -2 254 169 2351 102 3 0 chr13 51501757 51502061 -68242837 + AluSp SINE Alu 1 305 -8 322 219 169 97 chr13 51502061 51502204 -68242694 - MER112 DNA MER1_type -87 169 1 505 282 16 43 chr13 51502208 51502396 -68242502 + MIR3 SINE MIR 23 205 -3 1999 129 14 7 chr13 51502474 51502768 -68242130 + AluSx SINE Alu 1 296 -16 405 0 0 0 chr13 51503376 51503421 -68241477 + (TG)n Simple_repeat Simple_repeat 1 45 0 1037 203 53 123 chr13 51503590 51504137 -68240761 - L1MC5 LINE L1 -48 7913 7405 454 259 9 0 chr13 51504137 51504253 -68240645 - MIR SINE MIR -42 220 104 2239 109 10 0 chr13 51505609 51505912 -68238986 - AluSx SINE Alu -6 306 1 182 351 69 15 chr13 51508072 51508203 -68236695 + L3b LINE CR1 1125 1262 -321 182 189 38 0 chr13 51508412 51508518 -68236380 + (TA)n Simple_repeat Simple_repeat 2 111 0 2023 120 4 7 chr13 51508541 51508817 -68236081 - AluSx SINE Alu -37 275 1 351 338 35 0 chr13 51509356 51509501 -68235397 - MER5A DNA MER1_type 0 189 40 207 235 195 40 chr13 51510328 51510477 -68234421 + MIR SINE MIR 81 252 -10 557 231 16 0 chr13 51510721 51510842 -68234056 - AluJ SINE Alu 0 312 190 893 158 0 0 chr13 51510848 51510981 -68233917 - AluJ SINE Alu -179 133 1 2481 70 0 6 chr13 51511208 51511520 -68233378 - AluY SINE Alu -1 310 1 2086 127 14 0 chr13 51512124 51512415 -68232483 + AluSx SINE Alu 5 299 -13 396 59 0 0 chr13 51512415 51512466 -68232432 + (TA)n Simple_repeat Simple_repeat 1 51 0 829 125 8 0 chr13 51513139 51513259 -68231639 - FRAM SINE Alu -28 148 28 3341 184 37 3 chr13 51513259 51513857 -68231041 + MER54A LTR ERVL 284 901 0 2337 101 7 0 chr13 51514843 51515141 -68229757 + AluSx SINE Alu 1 300 -12 1016 24 81 0 chr13 51515892 51516016 -68228882 - MER85 DNA T2_type -2 137 4 1302 98 12 0 chr13 51517390 51517554 -68227344 - AluSg/x SINE Alu -15 295 130 1978 162 0 3 chr13 51517562 51517871 -68227027 - AluSx SINE Alu -4 308 1 2084 143 13 0 chr13 51517977 51518277 -68226621 - AluSx SINE Alu -8 304 1 18511 89 1 0 chr13 51518483 51521013 -68223885 - L1PA7 LINE L1 -1207 4939 2409 6680 78 7 16 chr13 51521013 51522204 -68222694 + L1PA7 LINE L1 4958 6150 -4 224 247 54 21 chr13 51524101 51524194 -68220704 + MIR SINE MIR 35 130 -78 2265 106 0 7 chr13 51525994 51526297 -68218601 - AluSx SINE Alu -11 301 1 1124 96 0 7 chr13 51526297 51526443 -68218455 - AluSq/x SINE Alu -168 145 1 771 224 0 0 chr13 51526607 51526750 -68218148 + FRAM SINE Alu 4 146 -30 351 0 0 0 chr13 51526754 51526793 -68218105 + (CA)n Simple_repeat Simple_repeat 2 40 0 940 178 12 0 chr13 51527201 51527364 -68217534 + AluJb SINE Alu 134 298 -14 186 250 0 23 chr13 51527426 51527470 -68217428 + MIR SINE MIR 82 124 -84 228 326 31 39 chr13 51527865 51527994 -68216904 - MIR SINE MIR -129 133 6 2067 124 0 22 chr13 51528750 51529064 -68215834 + AluSq SINE Alu 1 307 -6 876 235 68 56 chr13 51529219 51529466 -68215432 - MLT1L LTR MaLR -210 405 151 1345 230 46 9 chr13 51529466 51529792 -68215106 - MER58B DNA MER1_type -3 338 1 876 235 68 56 chr13 51529792 51529884 -68215014 - MLT1L LTR MaLR -464 151 62 2441 87 0 6 chr13 51530242 51530554 -68214344 + AluY SINE Alu 2 311 0 714 314 10 34 chr13 51531048 51531341 -68213557 - LTR67 LTR ERVL -270 287 2 199 237 140 18 chr13 51531353 51531467 -68213431 - L2 LINE L2 -304 2968 2841 1722 163 25 3 chr13 51531540 51531823 -68213075 - AluJo SINE Alu -21 291 3 203 88 29 0 chr13 51532003 51532037 -68212861 + (TC)n Simple_repeat Simple_repeat 2 36 0 1749 146 0 67 chr13 51532501 51532816 -68212082 - AluJo SINE Alu -17 295 2 180 269 76 42 chr13 51533010 51533129 -68211769 - L2 LINE L2 -181 3091 2969 490 272 116 13 chr13 51533362 51533586 -68211312 + MIR SINE MIR 16 262 0 504 122 0 12 chr13 51533731 51533813 -68211085 - FLAM_A SINE Alu -18 124 44 427 250 7 64 chr13 51533840 51533980 -68210918 - L2 LINE L2 -1 3312 3181 218 364 64 0 chr13 51534016 51534126 -68210772 + L2 LINE L2 3155 3271 -1 1381 159 58 39 chr13 51535558 51535815 -68209083 - AluJb SINE Alu -19 293 32 225 94 0 0 chr13 51535885 51535917 -68208981 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 2401 69 0 23 chr13 51535972 51536276 -68208622 - AluY SINE Alu -14 297 1 2319 96 3 0 chr13 51538088 51538389 -68206509 - AluSp SINE Alu -11 302 1 1446 91 11 0 chr13 51538625 51538812 -68206086 + AluSg1 SINE Alu 2 190 -119 378 0 0 0 chr13 51538826 51538868 -68206030 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 550 278 26 16 chr13 51539000 51539194 -68205704 - MIR SINE MIR -7 255 60 2677 48 0 3 chr13 51539302 51539613 -68205285 - AluY SINE Alu -1 310 1 2579 47 0 0 chr13 51539818 51540117 -68204781 - AluY SINE Alu -12 299 1 1459 85 0 0 chr13 51540587 51540764 -68204134 - AluSx SINE Alu -135 177 1 2272 69 0 52 chr13 51540967 51541272 -68203626 + AluSg SINE Alu 1 289 -21 206 263 0 18 chr13 51541876 51541933 -68202965 - MIR SINE MIR -68 140 85 1930 113 58 0 chr13 51543081 51543356 -68201542 - AluSp SINE Alu -22 291 1 1540 124 3 118 chr13 51543364 51543722 -68201176 - AluSx SINE Alu 0 321 1 294 307 107 7 chr13 51544031 51544171 -68200727 + MER5A DNA MER1_type 35 188 -1 199 259 111 0 chr13 51544172 51544253 -68200645 + MIR SINE MIR 102 191 -71 630 210 16 86 chr13 51544277 51544427 -68200471 + MER5A DNA MER1_type 17 153 -36 1091 146 169 50 chr13 51544427 51544688 -68200210 + AluJb SINE Alu 1 292 -10 630 210 16 86 chr13 51544688 51544723 -68200175 + MER5A DNA MER1_type 153 189 0 355 325 18 0 chr13 51544726 51544840 -68200058 + L2 LINE L2 3192 3307 -6 2068 108 3 17 chr13 51545234 51545529 -68199369 - AluSg SINE Alu -19 291 1 319 297 186 0 chr13 51545801 51545946 -68198952 + MIR SINE MIR 79 250 -12 2338 109 0 0 chr13 51546403 51546714 -68198184 - AluY SINE Alu 0 311 1 241 141 169 0 chr13 51547269 51547340 -68197558 + HsTC2 DNA Tc2 1795 1877 -21 1157 207 183 7 chr13 51548205 51548495 -68196403 - MLT1G3 LTR MaLR -10 520 180 1053 235 158 9 chr13 51548499 51548848 -68196050 - L1ME2 LINE L1 -68 6096 5696 1588 179 23 33 chr13 51549901 51550208 -68194690 + AluJo SINE Alu 1 304 -8 2450 64 14 3 chr13 51550213 51550509 -68194389 + AluY SINE Alu 1 299 -12 2432 82 0 3 chr13 51550668 51550972 -68193926 - AluY SINE Alu -8 303 1 2307 99 3 0 chr13 51551243 51551545 -68193353 - AluSq SINE Alu -10 303 1 2182 87 3 11 chr13 51552075 51552362 -68192536 + AluY SINE Alu 1 285 -26 41 0 0 0 chr13 51552362 51552403 -68192495 + AT_rich Low_complexity Low_complexity 1 41 0 1947 112 0 0 chr13 51552508 51552759 -68192139 + AluSg SINE Alu 1 251 -59 17043 91 0 2 chr13 51553054 51555392 -68189506 - L1P LINE L1 -1403 4743 2409 6676 85 2 13 chr13 51555392 51556591 -68188307 + L1PA7 LINE L1 4958 6151 -3 206 269 54 21 chr13 51558608 51558701 -68186197 + MIR SINE MIR 35 130 -78 2362 80 0 7 chr13 51560502 51560801 -68184097 - AluSx SINE Alu -13 299 3 2064 180 9 0 chr13 51560891 51561235 -68183663 - MER7A DNA MER2_type -1 345 1 362 307 129 12 chr13 51562042 51562205 -68182693 - MER5A DNA MER1_type 0 189 8 2096 134 0 3 chr13 51562269 51562561 -68182337 - AluSx SINE Alu -21 291 1 181 368 0 23 chr13 51562561 51562648 -68182250 - MER5A DNA MER1_type -37 152 68 227 215 149 37 chr13 51563158 51563265 -68181633 - MIR SINE MIR -64 144 26 186 209 0 0 chr13 51563340 51563383 -68181515 + A-rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr13 51564519 51564545 -68180353 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 2499 68 7 0 chr13 51565093 51565402 -68179496 - AluY SINE Alu 0 311 1 1155 69 7 7 chr13 51565402 51565547 -68179351 - AluSq/x SINE Alu -167 145 1 927 175 0 0 chr13 51565711 51565854 -68179044 + FRAM SINE Alu 4 146 -30 333 0 0 0 chr13 51565856 51565893 -68179005 + (CA)n Simple_repeat Simple_repeat 2 38 0 1058 162 12 0 chr13 51566303 51566476 -68178422 + AluJb SINE Alu 134 308 -4 186 250 0 23 chr13 51566544 51566588 -68178310 + MIR SINE MIR 82 124 -84 223 326 31 39 chr13 51566981 51567110 -68177788 - MIR SINE MIR -129 133 6 2341 90 0 19 chr13 51567866 51568176 -68176722 + AluSq SINE Alu 1 304 -9 936 232 62 50 chr13 51568347 51568594 -68176304 - MLT1L LTR MaLR -210 405 151 1394 229 43 9 chr13 51568594 51568921 -68175977 - MER58B DNA MER1_type -3 338 1 936 232 62 50 chr13 51568921 51569013 -68175885 - MLT1L LTR MaLR -464 151 62 2419 81 0 10 chr13 51569371 51569681 -68175217 + AluY SINE Alu 2 308 -3 637 317 10 34 chr13 51570170 51570463 -68174435 - LTR67 LTR ERVL -270 287 2 221 214 143 18 chr13 51570477 51570589 -68174309 - L2 LINE L2 -306 2966 2841 1740 161 25 3 chr13 51570662 51570947 -68173951 - AluJo SINE Alu -20 292 2 203 88 29 0 chr13 51571126 51571160 -68173738 + (TC)n Simple_repeat Simple_repeat 2 36 0 1696 146 0 70 chr13 51571626 51571942 -68172956 - AluJo SINE Alu -17 295 2 466 282 114 9 chr13 51572489 51572709 -68172189 + MIR SINE MIR 16 258 -4 457 134 0 24 chr13 51572858 51572940 -68171958 - FLAM_A SINE Alu -19 123 44 426 265 0 80 chr13 51572967 51573129 -68171769 - L2 LINE L2 -1 3312 3164 253 266 83 18 chr13 51573145 51573254 -68171644 + L2 LINE L2 3197 3312 -1 1430 149 55 39 chr13 51574686 51574941 -68169957 - AluJb SINE Alu -22 290 32 2371 70 0 24 chr13 51575003 51575301 -68169597 - AluY SINE Alu -20 291 1 1600 86 4 43 chr13 51577116 51577348 -68167550 - AluSq SINE Alu 0 313 91 7089 114 22 36 chr13 51577366 51578335 -68166563 + L1MA1 LINE L1 4316 5296 -1006 4698 25 0 0 chr13 51578335 51578866 -68166032 + L1PA3 LINE L1 5623 6153 -2 7089 114 22 36 chr13 51578866 51579881 -68165017 + L1MA1 LINE L1 5296 6302 0 454 238 128 80 chr13 51579954 51580181 -68164717 + MLT1H1 LTR MaLR 1 226 -329 2172 116 23 0 chr13 51580181 51580483 -68164415 + AluSc SINE Alu 1 309 0 454 238 128 80 chr13 51580483 51580530 -68164368 + MLT1H1 LTR MaLR 226 269 -286 2090 99 3 50 chr13 51580558 51580880 -68164018 + AluSx SINE Alu 6 312 0 2176 87 0 35 chr13 51580972 51581282 -68163616 + AluSg SINE Alu 3 301 -9 225 265 20 51 chr13 51581876 51581974 -68162924 - MIR SINE MIR -68 140 46 199 284 64 46 chr13 51582282 51582391 -68162507 - L2 LINE L2 -177 3095 2985 2216 70 53 0 chr13 51583076 51583360 -68161538 - AluSp SINE Alu -14 299 1 2144 125 0 0 chr13 51583393 51583680 -68161218 - AluSx SINE Alu -25 287 1 2562 62 3 0 chr13 51583707 51584014 -68160884 + AluY SINE Alu 1 308 -3 325 272 152 51 chr13 51584282 51584440 -68160458 + MER5A DNA MER1_type 5 189 0 226 247 111 0 chr13 51584440 51584521 -68160377 + MIR SINE MIR 102 191 -71 576 233 16 85 chr13 51584542 51584695 -68160203 + MER5A DNA MER1_type 14 153 -36 1246 118 171 49 chr13 51584695 51584958 -68159940 + AluJb SINE Alu 1 295 -17 576 233 16 85 chr13 51584958 51584993 -68159905 + MER5A DNA MER1_type 153 189 0 332 333 18 0 chr13 51584996 51585110 -68159788 + L2 LINE L2 3192 3307 -6 24 53 0 0 chr13 51585479 51585517 -68159381 + AT_rich Low_complexity Low_complexity 1 38 0 315 288 185 7 chr13 51585766 51585912 -68158986 + MIR SINE MIR 79 250 -12 225 163 82 0 chr13 51586900 51586949 -68157949 + HsTC2 DNA Tc2 1792 1844 -54 1295 208 140 60 chr13 51587837 51588175 -68156723 - MLT1G3 LTR MaLR -10 520 143 2073 97 11 4 chr13 51588175 51588478 -68156420 - AluSg SINE Alu 0 305 1 1295 208 140 60 chr13 51588478 51588538 -68156360 - MLT1G3 LTR MaLR -387 143 89 470 267 38 0 chr13 51588503 51588634 -68156264 - MER119 DNA MER1_type -277 306 171 * 511 111 22 11 chr13 51588726 51588816 -68156082 - MER2 DNA MER2_type -134 211 121 1943 144 3 7 chr13 51588816 51589114 -68155784 + AluSx SINE Alu 1 297 -15 2098 117 0 7 chr13 51589186 51589476 -68155422 - AluSx SINE Alu -17 295 8 1758 178 3 10 chr13 51589839 51590142 -68154756 - AluJb SINE Alu -5 307 7 705 218 0 0 chr13 51590378 51590511 -68154387 + FLAM_A SINE Alu 1 133 0 388 218 48 15 chr13 51590594 51590746 -68154152 - L1MD3 LINE L1 -1 7994 7782 1246 221 162 12 chr13 51590768 51591176 -68153722 - L1ME2 LINE L1 0 6164 5696 1671 179 3 29 chr13 51592228 51592541 -68152357 + AluJo SINE Alu 1 305 -7 2077 127 3 3 chr13 51592936 51593243 -68151655 - AluSq SINE Alu -6 307 1 1959 112 0 0 chr13 51593875 51594126 -68150772 + AluSg SINE Alu 1 251 -59 2117 83 22 0 chr13 51594335 51594638 -68150260 - AluSx SINE Alu 0 309 1 27 49 0 0 chr13 51595019 51595060 -68149838 + AT_rich Low_complexity Low_complexity 1 41 0 448 281 101 0 chr13 51595276 51595454 -68149444 + MIR SINE MIR 56 251 -11 212 206 0 0 chr13 51595425 51595459 -68149439 + L2 LINE L2 3227 3260 -12 * 1975 176 99 0 chr13 51596705 51597079 -68147819 - LTR57 LTR ERVL 0 411 1 1328 218 8 8 chr13 51597637 51597898 -68147000 + AluJo SINE Alu 39 299 -13 201 297 68 40 chr13 51598827 51598901 -68145997 + MIR3 SINE MIR 3 78 -130 * 369 250 118 37 chr13 51598889 51599025 -68145873 + MIR SINE MIR 116 262 0 461 217 19 0 chr13 51599506 51599612 -68145286 - L1MA10 LINE L1 -2 6332 6225 441 0 0 0 chr13 51599645 51599694 -68145204 + (CA)n Simple_repeat Simple_repeat 2 50 0 1755 189 26 63 chr13 51599699 51599901 -68144997 - L1ME1 LINE L1 -190 5976 5768 2325 82 0 20 chr13 51599901 51600204 -68144694 - AluSg SINE Alu -13 297 1 1755 189 26 63 chr13 51600204 51600462 -68144436 - L1ME1 LINE L1 -398 5768 5533 252 269 157 9 chr13 51600534 51600642 -68144256 + MIR SINE MIR 134 257 -5 2038 129 27 3 chr13 51600897 51601192 -68143706 - AluSg SINE Alu -8 302 1 200 180 20 20 chr13 51601884 51601934 -68142964 + (TTATA)n Simple_repeat Simple_repeat 1 50 0 1774 169 51 6 chr13 51603140 51603490 -68141408 + MER47A DNA MER2_type 1 366 0 198 0 0 0 chr13 51603764 51603786 -68141112 + (A)n Simple_repeat Simple_repeat 1 22 0 722 153 0 8 chr13 51603949 51604073 -68140825 - AluSg/x SINE Alu 0 309 187 1178 163 17 26 chr13 51604078 51604311 -68140587 - AluJb SINE Alu -81 231 1 262 261 45 23 chr13 51604318 51604406 -68140492 + MER5A DNA MER1_type 56 145 -44 382 273 143 19 chr13 51604425 51604586 -68140312 + MER5A DNA MER1_type 9 189 0 213 289 116 25 chr13 51604986 51605107 -68139791 + L2 LINE L2 2489 2620 -694 208 306 101 38 chr13 51605308 51605517 -68139381 + L2 LINE L2 1794 2015 -1299 419 282 113 31 chr13 51605880 51606075 -68138823 - MLT1L LTR MaLR -10 605 395 265 200 47 24 chr13 51606126 51606211 -68138687 - MLT1L LTR MaLR -339 276 190 353 357 0 0 chr13 51607167 51607335 -68137563 + (TGG)n Simple_repeat Simple_repeat 1 168 0 578 256 14 58 chr13 51608161 51608368 -68136530 - LTR67 LTR ERVL -2 555 358 356 192 39 135 chr13 51608640 51608796 -68136102 - MER69A DNA AcHobo -1 176 36 203 315 0 90 chr13 51608858 51608947 -68135951 + L2 LINE L2 2981 3061 -211 249 154 0 0 chr13 51609102 51609141 -68135757 - Alu SINE Alu -263 39 1 2486 77 0 0 chr13 51609214 51609525 -68135373 - AluY SINE Alu 0 311 1 22 0 0 0 chr13 51609863 51609885 -68135013 + AT_rich Low_complexity Low_complexity 1 22 0 449 286 101 0 chr13 51610101 51610279 -68134619 + MIR SINE MIR 56 251 -11 217 243 0 0 chr13 51610247 51610284 -68134614 + L2 LINE L2 3224 3260 -12 * 21 57 0 0 chr13 51610567 51610602 -68134296 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr13 51611192 51611231 -68133667 + AT_rich Low_complexity Low_complexity 1 39 0 2095 168 79 0 chr13 51611452 51611833 -68133065 - LTR57 LTR ERVL 0 411 1 1344 212 11 8 chr13 51612386 51612650 -68132248 + AluJo SINE Alu 34 298 -14 385 239 116 22 chr13 51613639 51613777 -68131121 + MIR SINE MIR 112 262 0 2132 214 49 42 chr13 51614267 51614416 -68130482 - L1ME2 LINE L1 -9 6155 6008 207 69 0 0 chr13 51614416 51614445 -68130453 + (CA)n Simple_repeat Simple_repeat 2 30 0 2132 214 49 42 chr13 51614445 51614652 -68130246 - L1ME2 LINE L1 -156 6008 5804 2233 96 0 20 chr13 51614652 51614955 -68129943 - AluSg SINE Alu -13 297 1 2132 214 49 42 chr13 51614955 51615213 -68129685 - L1ME2 LINE L1 -360 5804 5536 304 250 130 10 chr13 51615285 51615385 -68129513 + MIR SINE MIR 134 245 -17 2227 96 3 0 chr13 51615677 51615968 -68128930 - AluSq SINE Alu -21 292 1 1600 173 0 47 chr13 51616979 51617297 -68127601 - AluJo SINE Alu -9 303 1 2310 100 0 3 chr13 51617323 51617624 -68127274 - AluSg SINE Alu -10 300 1 21 0 0 0 chr13 51617957 51617978 -68126920 + AT_rich Low_complexity Low_complexity 1 21 0 2084 118 3 3 chr13 51619285 51619573 -68125325 - AluSc SINE Alu -20 289 2 2160 131 0 0 chr13 51619685 51619991 -68124907 - AluSg SINE Alu -4 306 1 2207 129 0 0 chr13 51620102 51620396 -68124502 - AluSx SINE Alu -18 294 1 2220 102 7 7 chr13 51621394 51621698 -68123200 + AluSx SINE Alu 1 304 -8 309 244 13 13 chr13 51621811 51621889 -68123009 + L2 LINE L2 3193 3270 -2 702 274 70 27 chr13 51621899 51622227 -68122671 + HAL1 LINE L1 1441 1782 -725 2072 99 50 0 chr13 51622706 51622988 -68121910 + AluSc SINE Alu 1 296 -13 475 198 0 11 chr13 51623067 51623158 -68121740 + FRAM SINE Alu 71 160 -16 1559 164 39 106 chr13 51623901 51624317 -68120581 + MLT1B LTR MaLR 3 390 0 2336 100 0 0 chr13 51624491 51624791 -68120107 - AluSx SINE Alu -12 300 1 194 138 0 0 chr13 51625395 51625424 -68119474 - MIR SINE MIR -82 180 152 635 165 63 0 chr13 51625455 51625582 -68119316 - MLT1D LTR MaLR 0 505 371 727 138 0 0 chr13 51625598 51625707 -68119191 + FLAM_A SINE Alu 21 129 -13 261 0 0 0 chr13 51625824 51625853 -68119045 + (TA)n Simple_repeat Simple_repeat 1 29 0 1334 186 84 11 chr13 51625853 51626127 -68118771 - AluJb SINE Alu -15 297 4 621 234 125 63 chr13 51626129 51626432 -68118466 - MLT1D LTR MaLR -183 322 1 225 291 12 47 chr13 51626433 51626519 -68118379 - MIR SINE MIR -164 98 16 21 0 0 0 chr13 51626691 51626712 -68118186 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 51627047 51627070 -68117828 + GC_rich Low_complexity Low_complexity 1 23 0 324 249 89 23 chr13 51627081 51627284 -68117614 - LTR26E LTR ERV1 -16 606 356 340 213 65 26 chr13 51627347 51627507 -68117391 - LTR8 LTR ERV1 -399 142 1 2469 50 3 0 chr13 51628129 51628426 -68116472 + AluSp SINE Alu 1 298 -15 208 346 59 10 chr13 51628659 51628760 -68116138 + L2 LINE L2 2286 2391 -923 454 311 74 48 chr13 51628825 51629176 -68115722 + L2 LINE L2 2394 2753 -561 285 344 11 0 chr13 51629221 51629314 -68115584 + L2 LINE L2 2932 3025 -247 560 176 166 95 chr13 51629443 51629948 -68114950 - MER34C LTR ERV1 0 542 8 1789 130 0 96 chr13 51630298 51630621 -68114277 + AluSx SINE Alu 1 292 -20 1006 173 18 0 chr13 51631127 51631295 -68113603 - MER5A DNA MER1_type 0 189 19 925 133 7 27 chr13 51631322 51631472 -68113426 - FRAM SINE Alu -7 169 23 1171 145 40 72 chr13 51633865 51634141 -68110757 - L1MA7 LINE L1 -9 6282 6016 2032 142 39 6 chr13 51634207 51634544 -68110354 - MER7A DNA MER2_type 0 346 1 558 235 124 0 chr13 51635442 51635595 -68109303 + MER5B DNA MER1_type 1 172 -6 21 0 0 0 chr13 51635861 51635882 -68109016 + AT_rich Low_complexity Low_complexity 1 21 0 317 314 66 4 chr13 51635893 51636119 -68108779 - L1ME4a LINE L1 -252 5869 5630 413 259 101 54 chr13 51636239 51636421 -68108477 + L1MC4 LINE L1 7697 7902 -140 2287 105 0 3 chr13 51636421 51636717 -68108181 - AluSg SINE Alu -14 296 2 413 259 101 54 chr13 51636717 51636850 -68108048 + L1MC4 LINE L1 7902 8027 -15 1074 174 0 0 chr13 51636931 51637103 -68107795 + FAM SINE Alu 1 172 -3 2258 79 0 26 chr13 51637107 51637411 -68107487 + AluY SINE Alu 1 296 -15 222 235 20 0 chr13 51638105 51638156 -68106742 + CT-rich Low_complexity Low_complexity 3 54 0 2929 138 48 45 chr13 51638158 51638280 -68106618 - L1MB4 LINE L1 0 6180 6060 240 35 0 0 chr13 51638280 51638309 -68106589 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1951 104 0 78 chr13 51638309 51638616 -68106282 - AluSx SINE Alu -29 283 1 2929 138 48 45 chr13 51638616 51639120 -68105778 - L1MB4 LINE L1 -119 6061 5551 603 241 60 6 chr13 51639519 51639685 -68105213 + MER5B DNA MER1_type 2 176 -2 22 0 0 0 chr13 51639695 51639717 -68105181 + AT_rich Low_complexity Low_complexity 1 22 0 448 138 0 43 chr13 51640039 51640133 -68104765 - L1MC3 LINE L1 0 7785 7696 394 322 40 17 chr13 51640140 51640314 -68104584 + L1M4 LINE L1 5057 5234 -912 745 133 0 0 chr13 51640351 51640464 -68104434 - L1PA10 LINE L1 -8 6160 6048 1644 155 0 34 chr13 51640693 51640958 -68103940 + AluJo SINE Alu 1 256 -56 2298 92 0 7 chr13 51641879 51642174 -68102724 - AluSx SINE Alu -19 293 1 674 168 92 40 chr13 51642801 51642974 -68101924 + L1MC1 LINE L1 6127 6308 -25 2038 102 8 4 chr13 51642976 51643241 -68101657 - AluSq SINE Alu -18 295 30 2421 78 0 0 chr13 51643729 51644025 -68100873 + AluY SINE Alu 1 296 -15 2103 123 0 23 chr13 51644199 51644507 -68100391 - AluSx SINE Alu -11 301 1 269 319 85 0 chr13 51644636 51644730 -68100168 + L2 LINE L2 3169 3270 -2 1169 101 6 0 chr13 51645326 51645485 -68099413 + AluSp SINE Alu 137 296 -17 2220 102 0 0 chr13 51645694 51645978 -68098920 - AluY SINE Alu -27 284 1 1841 162 0 41 chr13 51646070 51646385 -68098513 - AluJo SINE Alu -10 302 1 2002 131 3 3 chr13 51646398 51646688 -68098210 - AluSx SINE Alu -22 290 1 1584 143 42 65 chr13 51646698 51647082 -68097816 - L1MB4 LINE L1 0 6180 5806 192 152 0 0 chr13 51647350 51647383 -68097515 + CT-rich Low_complexity Low_complexity 1 33 0 1788 153 4 11 chr13 51647383 51647658 -68097240 - AluJb SINE Alu -39 273 1 432 204 31 93 chr13 51647864 51647987 -68096911 - L1ME1 LINE L1 -9 6157 6045 1698 158 7 10 chr13 51647987 51648279 -68096619 + AluJo SINE Alu 5 295 -17 432 204 31 93 chr13 51648279 51648317 -68096581 - L1ME1 LINE L1 -121 6045 6006 180 236 127 0 chr13 51648803 51648858 -68096040 - L2 LINE L2 -1 3271 3210 232 282 29 0 chr13 51649160 51649263 -68095635 + (TA)n Simple_repeat Simple_repeat 2 107 0 734 134 21 7 chr13 51650623 51650765 -68094133 - L1MB3 LINE L1 -7 6176 6033 26 82 0 0 chr13 51651086 51651147 -68093751 + AT_rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr13 51651202 51651227 -68093671 + AT_rich Low_complexity Low_complexity 1 25 0 1934 147 20 0 chr13 51651980 51652272 -68092626 + AluJo SINE Alu 1 298 -14 279 0 0 0 chr13 51652658 51652689 -68092209 + (TG)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr13 51652860 51652896 -68092002 + AT_rich Low_complexity Low_complexity 1 36 0 529 292 29 12 chr13 51653370 51653541 -68091357 + MIR SINE MIR 4 177 -85 1278 183 103 0 chr13 51654243 51654544 -68090354 - L1MD3 LINE L1 -256 7739 7408 301 273 11 0 chr13 51654549 51654637 -68090261 - MLT1F1 LTR MaLR -443 124 36 2719 183 60 38 chr13 51654637 51655331 -68089567 - L1MC3 LINE L1 -813 6972 6263 316 194 69 0 chr13 51655354 51655426 -68089472 + Charlie2 DNA MER1_type 45 121 -2661 1519 219 154 3 chr13 51655544 51656133 -68088765 + Charlie2 DNA MER1_type 1880 2557 -305 540 225 33 0 chr13 51656325 51656476 -68088422 + MLT1B LTR MaLR 22 177 -213 283 233 153 74 chr13 51656491 51656706 -68088192 + Charlie2 DNA MER1_type 2525 2756 -106 189 322 96 17 chr13 51656850 51656965 -68087933 + MIR SINE MIR 52 175 -87 1501 241 93 22 chr13 51657799 51658401 -68086497 - MER20B DNA MER1_type -132 651 7 398 299 45 15 chr13 51658476 51658610 -68086288 - MIR SINE MIR -74 188 51 22 0 0 0 chr13 51659011 51659033 -68085865 + AT_rich Low_complexity Low_complexity 1 22 0 762 154 39 0 chr13 51659121 51659251 -68085647 + AluJo SINE Alu 1 135 -177 287 232 76 92 chr13 51659461 51659498 -68085400 + L2 LINE L2 3132 3168 -145 2218 129 0 3 chr13 51659498 51659809 -68085089 - AluSx SINE Alu -2 310 1 287 232 76 92 chr13 51659809 51659956 -68084942 + L2 LINE L2 3168 3313 0 29 28 0 0 chr13 51660000 51660036 -68084862 + AT_rich Low_complexity Low_complexity 1 36 0 399 97 0 28 chr13 51660237 51660309 -68084589 + L1MB3 LINE L1 6088 6157 -26 2427 59 0 0 chr13 51660733 51661019 -68083879 - AluY SINE Alu -21 290 5 520 157 20 0 chr13 51661029 51661131 -68083767 - MLT1F LTR MaLR 0 542 439 271 336 91 21 chr13 51661217 51661360 -68083538 + L2 LINE L2 2375 2527 -787 1669 154 90 0 chr13 51662011 51662277 -68082621 - AluJo SINE Alu -22 290 1 282 267 67 73 chr13 51662590 51662740 -68082158 + L2 LINE L2 3163 3311 -2 288 254 72 58 chr13 51663327 51663526 -68081372 - L1ME4a LINE L1 -11 6110 5904 2373 89 0 0 chr13 51663526 51663818 -68081080 - AluSg SINE Alu -18 292 1 288 254 72 58 chr13 51663818 51663894 -68081004 - L1ME4a LINE L1 -217 5904 5831 518 289 64 23 chr13 51663962 51664135 -68080763 - MIR SINE MIR -20 242 63 742 192 8 0 chr13 51664239 51664369 -68080529 + FLAM_A SINE Alu 1 131 -2 290 68 23 0 chr13 51664582 51664626 -68080272 - MADE1 DNA Mariner 0 80 36 1990 137 0 3 chr13 51664860 51665145 -68079753 + AluJb SINE Alu 16 299 -13 445 262 36 78 chr13 51665179 51665369 -68079529 - L1ME4a LINE L1 -509 5612 5440 2124 147 0 3 chr13 51665369 51665676 -68079222 - AluSx SINE Alu -6 306 1 445 262 36 78 chr13 51665676 51665817 -68079081 - L1ME4a LINE L1 -681 5440 5295 24 0 0 0 chr13 51665833 51665857 -68079041 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr13 51665900 51665936 -68078962 + AT_rich Low_complexity Low_complexity 1 36 0 188 286 0 52 chr13 51666043 51666120 -68078778 - MIR SINE MIR -133 129 57 418 290 101 23 chr13 51667250 51667467 -68077431 - MLT1I LTR MaLR -26 383 150 845 203 45 11 chr13 51667786 51667963 -68076935 - L2 LINE L2 0 3313 3131 325 285 95 45 chr13 51668488 51668688 -68076210 + L2 LINE L2 3104 3313 0 2427 63 10 10 chr13 51669086 51669387 -68075511 + AluSq SINE Alu 1 301 -12 426 242 10 30 chr13 51669474 51669573 -68075325 - L2 LINE L2 -4 3309 3213 1098 198 25 8 chr13 51669576 51669813 -68075085 - MLT1E3 LTR MaLR 0 624 384 421 192 0 0 chr13 51669822 51669900 -68074998 - FRAM SINE Alu -75 101 24 579 153 8 0 chr13 51669912 51670030 -68074868 - HsTC2 DNA Tc2 -143 1755 1637 1846 142 10 39 chr13 51670107 51670417 -68074481 - AluJb SINE Alu -11 301 1 2468 84 10 0 chr13 51670673 51670982 -68073916 - AluSx SINE Alu 0 312 1 6318 83 2 7 chr13 51671199 51672121 -68072777 - L1P LINE L1 -1206 4940 4023 2368 74 0 0 chr13 51672271 51672575 -68072323 + AluY SINE Alu 1 304 0 2109 171 110 79 chr13 51672577 51672980 -68071918 - L1ME1 LINE L1 -5 6161 5723 1770 130 76 0 chr13 51672980 51673256 -68071642 - AluSx SINE Alu -15 297 1 2109 171 110 79 chr13 51673256 51673588 -68071310 - L1ME1 LINE L1 -443 5723 5403 1996 179 128 96 chr13 51673597 51674214 -68070684 - L1ME1 LINE L1 -856 5290 4695 2447 70 0 10 chr13 51674214 51674528 -68070370 - AluY SINE Alu 0 311 1 1996 179 128 96 chr13 51674528 51674551 -68070347 - L1ME1 LINE L1 -1451 4695 4674 561 168 67 25 chr13 51674551 51674670 -68070228 - FLAM_C SINE Alu -8 125 2 1996 179 128 96 chr13 51674670 51674818 -68070080 - L1ME1 LINE L1 -1472 4674 4532 2105 98 45 11 chr13 51674818 51675105 -68069793 - AluSx SINE Alu -15 297 1 1996 179 128 96 chr13 51675105 51675194 -68069704 - L1ME1 LINE L1 -1614 4532 4382 2246 90 7 13 chr13 51675638 51675948 -68068950 - AluSq SINE Alu -5 308 1 305 291 51 25 chr13 51676001 51676159 -68068739 + L1M4 LINE L1 4425 4586 -1560 1619 141 81 32 chr13 51676168 51676451 -68068447 - AluJb SINE Alu -15 297 1 736 260 213 24 chr13 51676451 51676912 -68067986 - L1ME3A LINE L1 -41 6129 5582 2032 166 74 3 chr13 51676912 51677303 -68067595 + MSTA LTR MaLR 1 419 -9 529 194 182 12 chr13 51677414 51677584 -68067314 - L1ME3A LINE L1 -585 5579 5381 1517 178 165 0 chr13 51677674 51678062 -68066836 + LTR32 LTR ERVL 13 464 -7 326 196 152 11 chr13 51678084 51678176 -68066722 + L1M4 LINE L1 3832 3936 -2210 1167 239 94 76 chr13 51678177 51678901 -68065997 + L1M4 LINE L1 4057 4793 -1353 301 238 58 165 chr13 51679497 51679842 -68065056 - L1M2 LINE L1 -5790 1059 752 433 309 77 13 chr13 51680851 51681082 -68063816 - L2 LINE L2 -268 3045 2794 1278 222 107 59 chr13 51681359 51681903 -68062995 - L1ME3 LINE L1 -2 6160 5591 367 231 0 0 chr13 51681906 51681971 -68062927 + MER5A DNA MER1_type 4 68 -121 1968 88 8 4 chr13 51681971 51682234 -68062664 + AluSg SINE Alu 1 264 -46 211 292 161 84 chr13 51682235 51682879 -68062019 - L2 LINE L2 -493 2821 2128 220 231 179 0 chr13 51682935 51683013 -68061885 - L2 LINE L2 -1340 1974 1883 673 281 151 30 chr13 51683162 51683493 -68061405 + L2 LINE L2 2439 2809 -505 22 0 0 0 chr13 51684819 51684841 -68060057 + AT_rich Low_complexity Low_complexity 1 22 0 865 129 0 16 chr13 51684847 51684971 -68059927 + FLAM_C SINE Alu 1 122 -11 234 0 0 0 chr13 51686720 51686746 -68058152 + (TA)n Simple_repeat Simple_repeat 2 27 0 2625 58 0 3 chr13 51686748 51687060 -68057838 - AluY SINE Alu 0 311 1 1027 235 0 14 chr13 51687197 51687414 -68057484 + MER20 DNA MER1_type 2 215 -4 1967 141 0 26 chr13 51687730 51688043 -68056855 - AluJb SINE Alu -7 305 1 1766 139 78 24 chr13 51688198 51688234 -68056664 - AluSx SINE Alu -1 311 278 222 62 0 0 chr13 51688234 51688266 -68056632 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1766 139 78 24 chr13 51688266 51688524 -68056374 - AluSx SINE Alu -34 278 1 430 197 0 0 chr13 51689454 51689530 -68055368 + L2 LINE L2 3228 3303 -10 992 168 0 0 chr13 51690420 51690569 -68054329 - FRAM SINE Alu -32 144 1 341 281 49 0 chr13 51691799 51691881 -68053017 - L2 LINE L2 -38 3234 3149 265 269 43 0 chr13 51692113 51692213 -68052685 + MIR SINE MIR 83 151 -57 1919 141 38 0 chr13 51693019 51693310 -68051588 - AluSx SINE Alu -10 302 1 1751 108 0 4 chr13 51694270 51694511 -68050387 - AluSg/x SINE Alu -5 305 66 2089 124 3 19 chr13 51694905 51695212 -68049686 - AluSc SINE Alu -7 302 1 530 118 0 0 chr13 51695704 51695780 -68049118 + AluS SINE Alu 224 299 -13 340 202 0 21 chr13 51696176 51696270 -68048628 - MER53 DNA DNA 0 189 98 1989 109 10 20 chr13 51697460 51697762 -68047136 + AluSx SINE Alu 1 299 -13 29 70 0 0 chr13 51698220 51698277 -68046621 + AT_rich Low_complexity Low_complexity 1 57 0 456 258 32 8 chr13 51698426 51698550 -68046348 - MIR SINE MIR -46 216 90 299 331 61 14 chr13 51698584 51698732 -68046166 - MIR SINE MIR -26 236 82 342 296 96 0 chr13 51698865 51698990 -68045908 + MIR SINE MIR 116 252 -10 288 250 223 47 chr13 51699180 51699328 -68045570 + L2 LINE L2 3093 3266 -6 858 186 6 34 chr13 51700159 51700336 -68044562 - AluJb SINE Alu -4 308 137 1995 113 18 0 chr13 51700977 51701251 -68043647 - AluSx SINE Alu -9 303 25 1986 140 0 10 chr13 51702217 51702517 -68042381 + AluJo SINE Alu 3 299 -13 280 215 0 15 chr13 51702520 51702585 -68042313 + L2 LINE L2 3248 3311 -2 799 194 6 24 chr13 51702719 51702884 -68042014 - MER20 DNA MER1_type -52 167 6 192 40 0 0 chr13 51704105 51704130 -68040768 + (TG)n Simple_repeat Simple_repeat 2 26 0 260 205 108 0 chr13 51704145 51704228 -68040670 - L1MD3 LINE L1 -23 7972 7881 238 248 55 55 chr13 51704454 51704563 -68040335 - MIR SINE MIR -49 213 105 270 189 38 0 chr13 51704961 51705014 -68039884 + MIR SINE MIR 93 147 -115 1113 178 78 25 chr13 51705447 51705589 -68039309 + MER33 DNA MER1_type 7 140 -2445 1849 160 6 16 chr13 51705589 51705902 -68038996 - AluJo SINE Alu -2 310 1 1113 178 78 25 chr13 51705902 51706040 -68038858 + MER33 DNA MER1_type 140 302 -22 22 35 0 0 chr13 51707664 51707693 -68037205 + AT_rich Low_complexity Low_complexity 1 29 0 1774 162 14 0 chr13 51707768 51708058 -68036840 - AluJb SINE Alu -18 294 1 1471 177 15 15 chr13 51708091 51708351 -68036547 + AluJb SINE Alu 38 297 -15 662 169 104 7 chr13 51708357 51708511 -68036387 - L1MD1 LINE L1 -7 6629 6461 1221 204 69 11 chr13 51708511 51708771 -68036127 + AluJo SINE Alu 22 296 -16 355 245 75 9 chr13 51708780 51708886 -68036012 - L1MD1 LINE L1 -166 6470 6358 1299 220 79 66 chr13 51708891 51709122 -68035776 - L1MD1 LINE L1 -895 5645 5419 1663 204 0 7 chr13 51709122 51709421 -68035477 - AluJo SINE Alu -15 297 1 1299 220 79 66 chr13 51709421 51709794 -68035104 - L1MD1 LINE L1 -1121 5419 5033 2584 220 70 74 chr13 51709817 51710793 -68034105 - L1MD1 LINE L1 -1794 4746 3775 1624 191 58 0 chr13 51710793 51710965 -68033933 - AluJb SINE Alu -2 310 113 225 83 0 0 chr13 51710965 51711001 -68033897 + (TTTAA)n Simple_repeat Simple_repeat 3 38 0 1624 191 58 0 chr13 51711001 51711121 -68033777 - AluJb SINE Alu -199 113 1 2584 220 70 74 chr13 51711121 51711435 -68033463 - L1MD1 LINE L1 -2765 3775 3461 1707 156 47 7 chr13 51711472 51711748 -68033150 - AluJo SINE Alu -25 287 1 1458 167 40 67 chr13 51711750 51711990 -68032908 - L1MD1 LINE L1 -6179 361 133 1527 179 3 89 chr13 51711990 51712315 -68032583 - AluJo SINE Alu -15 297 1 1458 167 40 67 chr13 51712315 51712445 -68032453 - L1MD1 LINE L1 -6407 133 1 2481 62 13 3 chr13 51713057 51713365 -68031533 + AluSp SINE Alu 1 311 -2 2033 108 36 33 chr13 51715955 51716260 -68028638 + AluSx SINE Alu 1 306 -6 864 206 0 29 chr13 51717129 51717304 -68027594 - FRAM SINE Alu -6 170 1 1491 143 9 13 chr13 51717320 51717550 -68027348 - AluJb SINE Alu -81 231 3 365 235 37 66 chr13 51718437 51718573 -68026325 - MIR SINE MIR -118 144 13 2256 110 7 3 chr13 51718678 51718977 -68025921 - AluSg SINE Alu -10 300 1 719 260 51 5 chr13 51719740 51719936 -68024962 + MIR SINE MIR 1 205 -57 192 77 0 0 chr13 51719980 51720006 -68024892 + (TG)n Simple_repeat Simple_repeat 1 26 0 288 270 34 0 chr13 51720046 51720135 -68024763 + MER46C DNA MER2_type 148 239 -99 555 140 348 0 chr13 51720135 51720299 -68024599 - Tigger7 DNA MER2_type 0 2487 2267 422 206 0 0 chr13 51720303 51720376 -68024522 - Tigger7 DNA MER2_type -2413 74 2 254 167 192 0 chr13 51720383 51720461 -68024437 + MER46C DNA MER2_type 245 337 -1 2387 63 7 3 chr13 51720955 51721256 -68023642 - AluY SINE Alu -9 302 1 275 252 166 26 chr13 51721620 51721771 -68023127 + MIR SINE MIR 20 191 -71 180 250 36 107 chr13 51722712 51722796 -68022102 + L2 LINE L2 3220 3297 -16 923 189 13 0 chr13 51722899 51723058 -68021840 - FAM SINE Alu -16 169 9 180 0 0 0 chr13 51723183 51723203 -68021695 + (T)n Simple_repeat Simple_repeat 1 20 0 1909 162 7 7 chr13 51723264 51723573 -68021325 - AluJo SINE Alu -3 309 1 189 0 0 0 chr13 51723576 51723597 -68021301 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 481 234 97 8 chr13 51724053 51724177 -68020721 - L2 LINE L2 0 3313 3179 263 270 0 0 chr13 51724540 51724603 -68020295 - MIR3 SINE MIR -15 193 131 1532 153 80 28 chr13 51724717 51725004 -68019894 - AluJo SINE Alu -10 302 1 266 383 33 33 chr13 51725090 51725273 -68019625 - MER5A DNA MER1_type -1 188 6 291 28 0 0 chr13 51728060 51728096 -68016802 + (CA)n Simple_repeat Simple_repeat 2 37 0 253 272 114 50 chr13 51728128 51728330 -68016568 + L2 LINE L2 2844 3058 -214 2084 102 27 17 chr13 51731049 51731343 -68013555 + AluSq SINE Alu 1 297 -16 270 275 53 0 chr13 51732352 51732483 -68012415 + L1MC4a LINE L1 5335 5472 -2336 188 263 26 97 chr13 51732668 51732782 -68012116 - MIR SINE MIR -2 260 155 306 249 114 85 chr13 51732782 51732983 -68011915 + L1MC4a LINE L1 5689 5895 -1913 255 79 0 0 chr13 51732997 51733035 -68011863 + (TG)n Simple_repeat Simple_repeat 2 39 0 2130 120 3 3 chr13 51733175 51733466 -68011432 - AluSx SINE Alu -21 291 1 199 230 54 40 chr13 51733787 51733861 -68011037 + L2 LINE L2 3198 3272 0 575 319 83 11 chr13 51734509 51734907 -68009991 + MLT1L LTR MaLR 70 602 -13 293 315 56 0 chr13 51734966 51735113 -68009785 - MIR SINE MIR -67 141 33 2250 100 7 0 chr13 51735175 51735464 -68009434 + AluSq SINE Alu 1 291 -22 514 203 62 0 chr13 51735497 51735625 -68009273 + MIR SINE MIR 109 244 -18 523 254 6 73 chr13 51735765 51735942 -68008956 + L2 LINE L2 3149 3313 0 937 110 55 22 chr13 51736457 51736639 -68008259 - L1MB3 LINE L1 -2 6181 5994 27 62 0 0 chr13 51739325 51739373 -68005525 + AT_rich Low_complexity Low_complexity 1 48 0 258 361 0 0 chr13 51739639 51739758 -68005140 - L1M4 LINE L1 -2311 3835 3717 1441 123 106 49 chr13 51739766 51740116 -68004782 - L1MA3 LINE L1 0 6305 5936 * 30617 103 14 51 chr13 51740111 51746500 -67998398 - L1PA7 LINE L1 -3 6151 14 264 346 157 19 chr13 51746693 51747005 -67997893 + L3 LINE CR1 900 1254 -323 445 315 73 23 chr13 51747558 51747777 -67997121 + L3 LINE CR1 1247 1476 -101 1850 170 0 3 chr13 51747851 51748145 -67996753 - AluJb SINE Alu -16 296 4 1551 139 131 4 chr13 51748403 51748677 -67996221 + AluSx SINE Alu 1 309 -3 584 238 137 54 chr13 51748904 51749047 -67995851 - L2 LINE L2 -1 3312 3182 2368 61 0 61 chr13 51749047 51749375 -67995523 + AluY SINE Alu 1 308 -3 2068 108 34 0 chr13 51749376 51749673 -67995225 + AluSx SINE Alu 1 307 -5 584 238 137 54 chr13 51749673 51749804 -67995094 - L2 LINE L2 -130 3183 3013 213 235 49 59 chr13 51749830 51749932 -67994966 + L2 LINE L2 3007 3107 -165 561 239 24 54 chr13 51750886 51751053 -67993845 - MER5B DNA MER1_type -14 164 3 3595 137 31 25 chr13 51751165 51751739 -67993159 + L1M2 LINE L1 1393 1973 -4876 2021 104 20 30 chr13 51751739 51752037 -67992861 + AluSx SINE Alu 1 295 -17 3595 137 31 25 chr13 51752037 51752135 -67992763 + L1M2 LINE L1 1973 2069 -4780 1199 174 31 10 chr13 51752135 51752331 -67992567 + AluJo SINE Alu 1 200 -112 3263 96 48 16 chr13 51752341 51752841 -67992057 + L1MA4A LINE L1 5782 6297 -6 2359 56 32 0 chr13 51752862 51753147 -67991751 + AluSc SINE Alu 1 294 -15 692 193 47 0 chr13 51753148 51753298 -67991600 - MER5A DNA MER1_type -32 157 1 1586 236 204 9 chr13 51753909 51754448 -67990450 + MER20B DNA MER1_type 1 644 -139 236 167 64 51 chr13 51754479 51754557 -67990341 - L1MC5 LINE L1 -30 7931 7853 7222 28 8 0 chr13 51754587 51755424 -67989474 - L1PA4 LINE L1 -3 6152 5309 350 295 101 0 chr13 51755998 51756127 -67988771 + L2 LINE L2 3123 3264 -8 395 316 53 29 chr13 51758358 51758529 -67986369 + MER5B DNA MER1_type 4 178 0 272 174 43 22 chr13 51759339 51759431 -67985467 + (TA)n Simple_repeat Simple_repeat 2 95 0 1501 81 58 27 chr13 51760324 51760547 -67984351 + MER30 DNA MER1_type 1 230 0 2345 95 0 10 chr13 51760583 51760752 -67984146 - AluSx SINE Alu -10 302 136 2469 61 0 3 chr13 51760752 51761049 -67983849 - AluY SINE Alu -15 296 1 2345 95 0 10 chr13 51761049 51761184 -67983714 - AluSx SINE Alu -176 136 1 194 0 39 0 chr13 51763230 51763256 -67981642 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 330 317 78 0 chr13 51763404 51763571 -67981327 - MIR3 SINE MIR -25 183 4 27 62 0 0 chr13 51763673 51763721 -67981177 + GC_rich Low_complexity Low_complexity 1 48 0 252 0 0 0 chr13 51765244 51765272 -67979626 + (CA)n Simple_repeat Simple_repeat 1 28 0 306 73 0 0 chr13 51765304 51765345 -67979553 + (TG)n Simple_repeat Simple_repeat 2 42 0 872 269 117 49 chr13 51766304 51766423 -67978475 + L1MC4a LINE L1 5291 5400 -2408 2274 118 3 0 chr13 51766423 51766729 -67978169 - AluSx SINE Alu -5 307 1 872 269 117 49 chr13 51766729 51767240 -67977658 + L1MC4a LINE L1 5400 5964 -1844 1939 174 66 24 chr13 51767884 51768264 -67976634 + MSTD LTR MaLR 1 396 0 662 308 53 84 chr13 51768383 51768988 -67975910 - L2 LINE L2 -43 3229 2607 2367 98 0 16 chr13 51768988 51769305 -67975593 - AluSx SINE Alu 0 312 1 1395 186 49 35 chr13 51769314 51769599 -67975299 - AluJo SINE Alu -23 289 1 662 308 53 84 chr13 51769599 51769907 -67974991 - L2 LINE L2 -673 2599 2300 2262 89 17 0 chr13 51770148 51770441 -67974457 - AluSx SINE Alu -12 300 3 1593 202 48 11 chr13 51770795 51771147 -67973751 - MLT1A1 LTR MaLR 0 365 1 2376 89 0 0 chr13 51771730 51772023 -67972875 - AluSg SINE Alu -17 293 1 288 276 98 6 chr13 51772527 51772690 -67972208 + L2 LINE L2 2609 2786 -528 2291 88 0 3 chr13 51772860 51773205 -67971693 + AluSq SINE Alu 1 344 0 493 244 0 24 chr13 51774918 51775041 -67969857 + L2 LINE L2 3194 3313 0 266 263 42 32 chr13 51775044 51775139 -67969759 - MIR SINE MIR -116 146 51 2026 178 16 24 chr13 51775253 51775630 -67969268 + MLT1A2 LTR MaLR 1 374 0 242 252 150 31 chr13 51775862 51775989 -67968909 - MIR3 SINE MIR -62 146 5 2100 88 37 0 chr13 51776210 51776533 -67968365 + AluY SINE Alu 1 333 0 332 339 87 7 chr13 51776553 51776830 -67968068 + L1ME4a LINE L1 5651 5949 -172 259 306 28 28 chr13 51777233 51777341 -67967557 + L3 LINE CR1 1454 1561 -16 364 274 8 129 chr13 51777466 51777544 -67967354 + MIR SINE MIR 27 113 -149 2123 108 17 14 chr13 51777544 51777841 -67967057 - AluSq SINE Alu -15 298 1 2236 110 0 7 chr13 51777844 51778143 -67966755 - AluSx SINE Alu -14 298 2 364 274 8 129 chr13 51778143 51778217 -67966681 + MIR SINE MIR 115 143 -119 1451 113 19 0 chr13 51778217 51778430 -67966468 + AluSg/x SINE Alu 89 305 -5 364 274 8 129 chr13 51778430 51778527 -67966371 + MIR SINE MIR 143 250 -12 2210 153 67 34 chr13 51780030 51780144 -67964754 - MSTB1 LTR MaLR 0 432 323 2458 86 0 0 chr13 51780144 51780446 -67964452 + AluSx SINE Alu 1 302 -10 2210 153 67 34 chr13 51780446 51780748 -67964150 - MSTB1 LTR MaLR -109 323 2 218 281 0 16 chr13 51780957 51781021 -67963877 + MIR3 SINE MIR 3 65 -143 435 216 0 59 chr13 51781257 51781359 -67963539 + MIR SINE MIR 73 168 -94 1593 201 23 16 chr13 51781431 51781739 -67963159 - AluJb SINE Alu -2 310 1 2321 107 0 0 chr13 51782241 51782540 -67962358 + AluSg SINE Alu 1 299 -11 2175 103 0 3 chr13 51782555 51782873 -67962025 + AluSx SINE Alu 4 320 0 333 0 0 0 chr13 51783594 51783631 -67961267 + (TG)n Simple_repeat Simple_repeat 2 38 0 491 298 25 12 chr13 51783709 51783870 -67961028 + MIR SINE MIR 97 259 -3 2084 250 113 50 chr13 51784028 51785125 -67959773 - HAL1 LINE L1 -1317 1190 25 336 304 9 27 chr13 51785139 51785251 -67959647 - MER5B DNA MER1_type -33 145 36 249 83 0 0 chr13 51785944 51785980 -67958918 + (CA)n Simple_repeat Simple_repeat 2 37 0 1058 261 157 42 chr13 51786350 51786827 -67958071 - MLT1H1 LTR MaLR 0 595 20 371 267 14 122 chr13 51787295 51787516 -67957382 - MIR SINE MIR -48 214 18 2209 132 0 0 chr13 51788322 51788625 -67956273 + AluSx SINE Alu 1 303 -9 23 33 0 0 chr13 51789157 51789187 -67955711 + AT_rich Low_complexity Low_complexity 1 30 0 1584 164 13 50 chr13 51789510 51789686 -67955212 - AluJo SINE Alu -25 287 125 2206 116 0 3 chr13 51789686 51789980 -67954918 + AluSx SINE Alu 1 293 -19 1584 164 13 50 chr13 51789980 51790101 -67954797 - AluJo SINE Alu -187 125 1 215 269 65 11 chr13 51790117 51790210 -67954688 - L2 LINE L2 -2 3270 3173 379 354 45 44 chr13 51790649 51791209 -67953689 + L2 LINE L2 2507 3060 -212 256 170 21 0 chr13 51791545 51791592 -67953306 - MLT1K LTR MaLR -32 556 509 2128 141 33 22 chr13 51791975 51792336 -67952562 + MLT1A1 LTR MaLR 1 365 0 506 266 106 55 chr13 51793105 51793304 -67951594 - Charlie2 DNA MER1_type -2653 209 1 887 106 0 8 chr13 51793709 51793841 -67951057 - MER41A LTR ERV1 0 554 424 728 91 9 0 chr13 51793842 51793848 -67951050 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 728 91 9 0 chr13 51793848 51793958 -67950940 + (TTCC)n Simple_repeat Simple_repeat 4 114 0 1782 166 11 0 chr13 51793995 51794272 -67950626 - AluJb SINE Alu -32 280 1 2220 116 3 0 chr13 51794403 51794706 -67950192 + AluSp SINE Alu 1 304 -9 248 293 13 0 chr13 51794910 51794985 -67949913 + MER116 DNA Mariner 3 78 -2 244 48 48 0 chr13 51795724 51795766 -67949132 + (TC)n Simple_repeat Simple_repeat 1 44 0 225 65 0 0 chr13 51795766 51795797 -67949101 + (TG)n Simple_repeat Simple_repeat 2 32 0 4770 117 3 3 chr13 51795799 51796492 -67948406 - L1PA16 LINE L1 -9 6157 5465 620 214 24 48 chr13 51796883 51796917 -67947981 + MER103 DNA DNA 2 35 -131 1112 293 84 11 chr13 51796917 51797371 -67947527 + LTR16C LTR ERVL 3 489 -2 620 214 24 48 chr13 51797371 51797504 -67947394 + MER103 DNA DNA 35 165 -1 327 381 20 7 chr13 51797597 51797744 -67947154 - MIR3 SINE MIR -56 152 4 4892 138 15 88 chr13 51797929 51797969 -67946929 - L1MB3 LINE L1 -2 6181 6140 1840 141 26 13 chr13 51797969 51798275 -67946623 + AluSx SINE Alu 1 310 -2 4892 138 15 88 chr13 51798275 51798498 -67946400 - L1MB3 LINE L1 -43 6140 5902 2940 105 21 2 chr13 51798498 51798918 -67945980 - MSTA LTR MaLR 0 428 1 4892 138 15 88 chr13 51798918 51799490 -67945408 - L1MB3 LINE L1 -281 5902 5427 2128 97 7 0 chr13 51799490 51799779 -67945119 + AluSp SINE Alu 1 291 -22 4892 138 15 88 chr13 51799779 51799942 -67944956 - L1MB3 LINE L1 -756 5427 5254 1104 246 12 4 chr13 51799966 51800222 -67944676 - Charlie1b DNA MER1_type -265 258 1 608 200 168 0 chr13 51800337 51800492 -67944406 + MER5A DNA MER1_type 9 189 0 815 259 161 33 chr13 51801611 51802032 -67942866 + MLT1L LTR MaLR 141 615 0 2153 100 3 0 chr13 51802246 51802546 -67942352 + AluY SINE Alu 1 301 -10 224 277 11 75 chr13 51803085 51803179 -67941719 + MIR SINE MIR 86 173 -89 478 298 69 49 chr13 51804641 51804886 -67940012 + MIR SINE MIR 13 262 0 542 227 23 0 chr13 51805840 51805972 -67938926 + MIR SINE MIR 128 262 0 350 341 100 6 chr13 51806172 51806342 -67938556 - MIR3 SINE MIR -8 200 15 2148 116 3 0 chr13 51806537 51806838 -67938060 - AluSx SINE Alu -10 302 1 531 269 62 22 chr13 51807760 51807987 -67936911 + L1M4b LINE L1 23 258 -6601 396 0 0 0 chr13 51808063 51808107 -67936791 + (TG)n Simple_repeat Simple_repeat 2 45 0 419 258 83 23 chr13 51808575 51808707 -67936191 + MIR SINE MIR 2 141 -121 216 318 45 0 chr13 51808681 51808747 -67936151 - MIR SINE MIR -62 200 132 * 1467 240 160 55 chr13 51809013 51809575 -67935323 - MLT1E2 LTR MaLR 0 626 6 422 252 16 16 chr13 51810017 51810140 -67934758 + LTR67 LTR ERVL 434 556 -1 194 263 0 12 chr13 51811459 51811539 -67933359 + CT-rich Low_complexity Low_complexity 2 80 0 234 229 86 0 chr13 51812207 51812277 -67932621 + L2 LINE L2 3238 3313 0 180 274 94 60 chr13 51812776 51812893 -67932005 + MIR3 SINE MIR 13 133 -75 397 291 111 23 chr13 51813005 51813177 -67931721 + L2 LINE L2 3049 3235 -37 274 226 0 21 chr13 51813199 51813292 -67931606 + GA-rich Low_complexity Low_complexity 5 95 0 225 132 0 0 chr13 51813846 51813884 -67931014 + (TG)n Simple_repeat Simple_repeat 2 39 0 1903 149 3 0 chr13 51814027 51814335 -67930563 + AluSx SINE Alu 1 309 -3 213 194 0 0 chr13 51814435 51814471 -67930427 + polypyrimidine Low_complexity Low_complexity 2 37 0 258 81 0 0 chr13 51815654 51815691 -67929207 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 1977 101 4 0 chr13 51815770 51816048 -67928850 + AluSc SINE Alu 19 297 -12 1852 133 0 37 chr13 51816057 51816380 -67928518 + AluJo SINE Alu 1 311 -1 2323 93 0 0 chr13 51816383 51816694 -67928204 + AluY SINE Alu 1 311 0 573 244 77 18 chr13 51816839 51817007 -67927891 + MIR SINE MIR 15 192 -70 397 254 63 16 chr13 51817499 51817625 -67927273 + MIR SINE MIR 16 147 -115 1435 156 28 35 chr13 51817631 51817919 -67926979 + AluJo SINE Alu 7 292 -20 229 322 50 28 chr13 51819371 51819551 -67925347 + L2 LINE L2 1920 2103 -1211 2229 117 0 0 chr13 51819600 51819908 -67924990 - AluSc SINE Alu -1 308 1 21 0 0 0 chr13 51821069 51821090 -67923808 + AT_rich Low_complexity Low_complexity 1 21 0 2517 49 0 0 chr13 51821157 51821461 -67923437 - AluY SINE Alu -7 304 1 294 253 27 100 chr13 51822587 51822737 -67922161 - MIR SINE MIR -70 192 54 1982 114 50 0 chr13 51823134 51823431 -67921467 - AluSx SINE Alu 0 312 1 818 114 15 0 chr13 51823810 51823942 -67920956 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 256 339 0 0 chr13 51823944 51824006 -67920892 + C-rich Low_complexity Low_complexity 5 66 0 666 58 0 0 chr13 51824106 51824193 -67920705 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 336 327 115 56 chr13 51824204 51824543 -67920355 - L2 LINE L2 -19 3253 2895 580 235 75 55 chr13 51824605 51824948 -67919950 + MLT1J2 LTR MaLR 64 440 -10 251 91 0 23 chr13 51824983 51825027 -67919871 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 531 243 95 0 chr13 51825030 51825178 -67919720 + MER103 DNA DNA 3 164 -2 1990 141 0 0 chr13 51825608 51825905 -67918993 + AluSx SINE Alu 1 297 -15 2822 217 121 8 chr13 51825914 51826716 -67918182 - L1ME3A LINE L1 -17 6153 5261 2215 98 0 3 chr13 51827096 51827401 -67917497 - AluSg SINE Alu -6 304 1 1055 254 195 22 chr13 51827401 51827541 -67917357 - L2 LINE L2 -9 3304 3189 2148 70 42 0 chr13 51827541 51827825 -67917073 - AluY SINE Alu -15 296 1 1055 254 195 22 chr13 51827825 51828417 -67916481 - L2 LINE L2 -124 3189 2427 1906 145 0 10 chr13 51828417 51828721 -67916177 + AluJo SINE Alu 10 310 -2 1055 254 195 22 chr13 51828721 51828740 -67916158 - L2 LINE L2 -886 2427 2413 382 274 34 48 chr13 51830083 51830229 -67914669 - MIR3 SINE MIR -63 145 2 355 263 132 69 chr13 51830512 51830693 -67914205 + MIR3 SINE MIR 1 199 -9 277 327 126 13 chr13 51831341 51831500 -67913398 - MIR3 SINE MIR -9 199 23 455 313 8 8 chr13 51831567 51831698 -67913200 + MIR3 SINE MIR 15 145 -63 2255 98 7 0 chr13 51831867 51832174 -67912724 + AluSg SINE Alu 1 309 -1 184 258 32 32 chr13 51832224 51832286 -67912612 + L3b LINE CR1 1292 1353 -230 2320 94 0 0 chr13 51832540 51832848 -67912050 + AluSx SINE Alu 1 308 -4 2067 82 0 78 chr13 51832924 51833243 -67911655 + AluY SINE Alu 1 294 -17 683 292 105 0 chr13 51833244 51833463 -67911435 + MIR SINE MIR 21 262 0 218 192 19 0 chr13 51835174 51835226 -67909672 + (CACCAT)n Simple_repeat Simple_repeat 1 53 0 320 252 25 33 chr13 51835248 51835365 -67909533 + MIR SINE MIR 32 147 -61 262 282 35 58 chr13 51835560 51835734 -67909164 + L2 LINE L2 2878 3047 -225 1246 178 63 49 chr13 51838283 51838570 -67906328 - AluJb SINE Alu -11 301 11 220 318 47 73 chr13 51838647 51838839 -67906059 - L2 LINE L2 -100 3213 3027 7197 110 180 83 chr13 51838839 51840408 -67904490 - pTR5 LTR ERV1 0 2438 142 2080 89 0 38 chr13 51840466 51840782 -67904116 + AluY SINE Alu 1 304 -7 335 130 0 0 chr13 51841325 51841371 -67903527 + Alu SINE Alu 1 46 -256 311 253 141 57 chr13 51841883 51842086 -67902812 + HAL1 LINE L1 1140 1377 -1130 9864 75 9 26 chr13 51842086 51843482 -67901416 + SVA Other Other 15 1386 0 311 253 141 57 chr13 51843482 51843575 -67901323 + HAL1 LINE L1 1377 1461 -1046 207 198 23 105 chr13 51843619 51843705 -67901193 + CT-rich Low_complexity Low_complexity 3 81 0 847 280 67 93 chr13 51843706 51844199 -67900699 + MLT1K LTR MaLR 86 565 -23 508 241 18 85 chr13 51844206 51844461 -67900437 + HAL1b LINE L1 400 1664 -706 256 151 430 0 chr13 51844943 51845029 -67899869 + L2 LINE L2 3191 3313 0 1934 126 7 0 chr13 51845659 51845952 -67898946 - AluSq SINE Alu -18 295 1 213 39 0 0 chr13 51846146 51846172 -67898726 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2077 111 10 26 chr13 51846185 51846492 -67898406 - AluSx SINE Alu -10 302 1 231 284 21 21 chr13 51846539 51846634 -67898264 + L1ME4a LINE L1 2258 2352 -3794 419 277 119 45 chr13 51846676 51847572 -67897326 + L1ME4a LINE L1 4222 5226 -948 234 0 0 0 chr13 51847572 51847598 -67897300 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 419 277 119 45 chr13 51847598 51847883 -67897015 + L1ME4a LINE L1 5226 5488 -686 608 211 39 26 chr13 51848154 51848310 -67896588 - MLT1L LTR MaLR -295 320 163 367 283 165 42 chr13 51848365 51848806 -67896092 + L1ME4a LINE L1 5551 6065 -56 507 235 65 144 chr13 51848817 51848987 -67895911 - MLT1L LTR MaLR -50 565 383 1741 98 19 0 chr13 51848987 51849253 -67895645 - L1MA4A LINE L1 -6 6297 6027 507 235 65 144 chr13 51849253 51849279 -67895619 - MLT1L LTR MaLR -232 383 357 2007 228 69 37 chr13 51849279 51849844 -67895054 - MER119 DNA MER1_type 0 583 1 507 235 65 144 chr13 51849844 51849952 -67894946 - MLT1L LTR MaLR -258 357 284 1582 236 72 12 chr13 51849964 51850383 -67894515 - L1ME1 LINE L1 -5 6161 5718 2490 106 9 6 chr13 51850384 51850734 -67894164 + THE1B LTR MaLR 1 351 -13 3946 152 62 0 chr13 51850734 51851971 -67892927 + pTR5 LTR ERV1 748 2468 0 390 208 0 0 chr13 51851992 51852069 -67892829 - L1ME1 LINE L1 -445 5721 5645 358 278 130 18 chr13 51852070 51852239 -67892659 - MLT1L LTR MaLR -309 306 119 270 247 65 54 chr13 51852998 51853091 -67891807 + L2 LINE L2 3199 3292 -21 276 161 345 0 chr13 51853308 51853395 -67891503 - MIR3 SINE MIR -7 201 85 2373 72 0 0 chr13 51853755 51854061 -67890837 + AluY SINE Alu 1 306 -5 1031 209 130 0 chr13 51854872 51855102 -67889796 + MIR SINE MIR 1 260 -2 3011 171 62 9 chr13 51855184 51855840 -67889058 - Charlie1a DNA MER1_type 0 1455 765 228 184 0 0 chr13 51855881 51855930 -67888968 + CT-rich Low_complexity Low_complexity 2 50 0 785 157 25 0 chr13 51855933 51856054 -67888844 - AluJb SINE Alu -188 124 1 1787 210 68 24 chr13 51856059 51856469 -67888429 - Charlie1a DNA MER1_type -1027 428 1 2161 126 47 19 chr13 51856577 51856942 -67887956 - THE1C LTR MaLR 0 375 1 2801 185 30 4 chr13 51858978 51859471 -67885427 - MLT2B2 LTR ERVL 0 515 10 467 335 39 22 chr13 51859475 51859654 -67885244 - L3 LINE CR1 -2 1575 1394 279 346 25 37 chr13 51859682 51859844 -67885054 - L3 LINE CR1 -393 1184 1025 191 35 0 35 chr13 51859919 51859948 -67884950 + (AGGGGG)n Simple_repeat Simple_repeat 3 30 0 4032 113 4 73 chr13 51860088 51860645 -67884253 + MER41B LTR ERV1 1 504 -131 2166 115 7 0 chr13 51860645 51860950 -67883948 - AluSq SINE Alu -4 309 3 4032 113 4 73 chr13 51860950 51861074 -67883824 + MER41B LTR ERV1 504 635 0 571 204 191 31 chr13 51861191 51861299 -67883599 + MER5A DNA MER1_type 1 90 -99 279 0 0 0 chr13 51861299 51861330 -67883568 + (TG)n Simple_repeat Simple_repeat 2 32 0 719 179 0 0 chr13 51861330 51861447 -67883451 - FLAM_A SINE Alu -15 118 2 571 204 191 31 chr13 51861447 51861499 -67883399 + MER5A DNA MER1_type 89 188 -1 408 266 124 72 chr13 51861506 51861598 -67883300 + LTR16A1 LTR ERVL 6 92 -365 2250 75 0 0 chr13 51861598 51861911 -67882987 - AluY SINE Alu 0 313 1 408 266 124 72 chr13 51861911 51862148 -67882750 + LTR16A1 LTR ERVL 92 353 -104 803 186 0 7 chr13 51862150 51862290 -67882608 - FLAM_C SINE Alu -4 139 1 337 293 0 0 chr13 51862302 51862384 -67882514 + LTR16A1 LTR ERVL 376 457 0 332 228 35 70 chr13 51863375 51863489 -67881409 - L2 LINE L2 -2 3311 3202 288 318 111 48 chr13 51863705 51864057 -67880841 - L2 LINE L2 -347 2967 2594 367 283 166 13 chr13 51864092 51864255 -67880643 + MIR SINE MIR 45 231 -31 2118 93 0 3 chr13 51864266 51864555 -67880343 - AluSg SINE Alu -21 289 2 180 111 0 0 chr13 51864573 51864600 -67880298 + (A)n Simple_repeat Simple_repeat 1 27 0 1245 243 49 54 chr13 51864626 51865033 -67879865 - LTR16C LTR ERVL -2 489 85 279 324 39 70 chr13 51865154 51865413 -67879485 - L2 LINE L2 -778 2536 2286 240 184 0 0 chr13 51865970 51866019 -67878879 + (TATG)n Simple_repeat Simple_repeat 2 50 0 226 288 0 30 chr13 51866573 51866639 -67878259 - MIR SINE MIR -16 246 183 762 307 0 9 chr13 51867564 51867782 -67877116 + MIR SINE MIR 47 262 0 349 235 61 53 chr13 51867927 51868059 -67876839 - L1MC5 LINE L1 -96 7865 7733 24 53 0 0 chr13 51868867 51868905 -67875993 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr13 51870684 51870708 -67874190 + GC_rich Low_complexity Low_complexity 1 24 0 593 286 36 55 chr13 51877324 51877436 -67867462 + MIR SINE MIR 3 111 -151 1879 120 0 40 chr13 51877436 51877761 -67867137 - AluSx SINE Alu 0 312 1 593 286 36 55 chr13 51877761 51877868 -67867030 + MIR SINE MIR 111 218 -44 267 337 48 0 chr13 51877900 51877983 -67866915 - MIR3 SINE MIR -29 179 93 2110 166 26 18 chr13 51878428 51878813 -67866085 - MLT1B LTR MaLR -2 388 1 251 273 15 0 chr13 51878815 51878881 -67866017 - L2 LINE L2 -1 3312 3246 3725 158 76 13 chr13 51878883 51879631 -67865267 + L1MC3 LINE L1 6979 7773 -12 374 208 40 163 chr13 51879805 51880007 -67864891 - L2 LINE L2 -175 3097 2921 1251 248 10 10 chr13 51882719 51883009 -67861889 - MLT1I LTR MaLR 0 409 120 273 119 0 0 chr13 51883174 51883216 -67861682 + (T)n Simple_repeat Simple_repeat 1 42 0 506 283 103 30 chr13 51885489 51885722 -67859176 - MIR SINE MIR -2 260 11 1904 121 48 0 chr13 51886069 51886359 -67858539 - AluSx SINE Alu -5 307 4 696 261 49 5 chr13 51886498 51886682 -67858216 - MER91A DNA MER1_type -2 194 3 570 130 28 0 chr13 51887984 51888092 -67856806 - L1MA4A LINE L1 -11 6292 6182 1570 211 16 0 chr13 51888093 51888415 -67856483 - L1PB4 LINE L1 -105 6051 5725 1548 248 68 22 chr13 51888760 51888986 -67855912 + MLT1J LTR MaLR 24 238 -273 1306 197 0 0 chr13 51888986 51889209 -67855689 - MER58A DNA MER1_type -1 223 1 1548 248 68 22 chr13 51889209 51889397 -67855501 + MLT1J LTR MaLR 238 457 -54 2066 87 6 62 chr13 51890107 51890428 -67854470 - AluSq SINE Alu -10 303 1 241 280 13 0 chr13 51890549 51890624 -67854274 + L3b LINE CR1 1190 1265 -318 2088 143 45 3 chr13 51890635 51890991 -67853907 + L1PA15 LINE L1 5793 6163 -2 410 70 0 99 chr13 51891218 51891289 -67853609 - AluS SINE Alu -246 67 4 593 355 10 0 chr13 51891321 51891524 -67853374 + MIR SINE MIR 47 251 -11 679 259 24 131 chr13 51891703 51891993 -67852905 + L2 LINE L2 3014 3272 0 274 291 89 0 chr13 51894380 51894459 -67850439 + L2 LINE L2 3201 3286 -27 873 283 48 58 chr13 51894856 51895290 -67849608 - L2 LINE L2 -49 3264 2835 1136 323 54 10 chr13 51895497 51895996 -67848902 - LTR33 LTR ERVL 0 521 1 203 221 303 57 chr13 51896804 51897085 -67847813 + L2 LINE L2 2949 3298 -15 1283 246 59 33 chr13 51898809 51899081 -67845817 - L1ME LINE L1 -4393 2745 2455 1572 206 24 7 chr13 51899081 51899368 -67845530 - AluJb SINE Alu -19 293 2 1283 246 59 33 chr13 51899368 51899554 -67845344 - L1ME LINE L1 -4683 2455 2275 21 0 0 0 chr13 51899555 51899576 -67845322 + AT_rich Low_complexity Low_complexity 1 21 0 242 301 0 0 chr13 51899601 51899674 -67845224 + T-rich Low_complexity Low_complexity 1 73 0 653 288 47 0 chr13 51899689 51899904 -67844994 - L1ME LINE L1 -4868 2270 2046 989 176 39 11 chr13 51899907 51900089 -67844809 + MER76 LTR ERV 14 200 -488 1772 175 6 19 chr13 51900098 51900412 -67844486 - AluJo SINE Alu -2 310 1 1014 260 39 24 chr13 51900413 51900744 -67844154 + MER76 LTR ERV 342 677 -11 767 272 50 3 chr13 51900767 51901088 -67843810 - L1ME LINE L1 -4970 1966 1616 638 202 9 0 chr13 51901096 51901205 -67843693 + FLAM_A SINE Alu 13 122 -20 237 267 125 8 chr13 51901307 51901427 -67843471 - L1ME LINE L1 -5298 1561 1428 258 105 0 0 chr13 51901450 51901488 -67843410 + (TG)n Simple_repeat Simple_repeat 2 39 0 304 398 55 6 chr13 51901981 51902345 -67842553 - L1ME LINE L1 -5941 1197 816 2492 62 7 10 chr13 51902492 51902801 -67842097 - AluY SINE Alu -3 308 1 804 209 8 57 chr13 51902964 51903208 -67841690 + L1MC5 LINE L1 7692 7923 -38 297 0 0 0 chr13 51903832 51903865 -67841033 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 183 274 24 48 chr13 51903929 51904013 -67840885 - L2 LINE L2 -3 3269 3188 183 129 0 0 chr13 51904330 51904361 -67840537 + (ATG)n Simple_repeat Simple_repeat 2 32 0 501 192 24 51 chr13 51904658 51904816 -67840082 - MIR SINE MIR -61 147 31 292 227 118 50 chr13 51906222 51906341 -67838557 - MIR SINE MIR -111 151 25 358 197 45 83 chr13 51906443 51906575 -67838323 + LTR33 LTR ERVL 1 127 -394 * 1028 228 65 8 chr13 51906573 51906836 -67838062 + LTR33 LTR ERVL 244 521 0 516 307 88 30 chr13 51910430 51910815 -67834083 - MLT1J LTR MaLR 0 511 59 4085 146 9 0 chr13 51911713 51912342 -67832556 - MER41B LTR ERV1 0 635 1 2279 99 7 0 chr13 51914350 51914644 -67830254 + AluSq SINE Alu 9 304 -9 2409 151 26 30 chr13 51914819 51915284 -67829614 - L1MB4 LINE L1 -1 6179 5717 2140 159 11 19 chr13 51915290 51915660 -67829238 - L1MB4 LINE L1 -531 5652 5286 465 256 92 43 chr13 51916047 51916254 -67828644 - L2 LINE L2 0 3313 3097 212 286 0 0 chr13 51916654 51916710 -67828188 + L2 LINE L2 3242 3297 -16 23 0 0 0 chr13 51919046 51919069 -67825829 + AT_rich Low_complexity Low_complexity 1 23 0 637 287 60 0 chr13 51919760 51919976 -67824922 - MIR SINE MIR -12 250 22 504 299 126 19 chr13 51920222 51920653 -67824245 + L2 LINE L2 2593 3077 -195 1920 147 3 29 chr13 51920849 51921155 -67823743 - AluJo SINE Alu -14 298 1 2207 90 7 0 chr13 51922303 51922653 -67822245 - AluSg SINE Alu 0 352 1 246 293 132 42 chr13 51922667 51922685 -67822213 - L1ME3A LINE L1 0 6170 6155 441 0 0 0 chr13 51922685 51922734 -67822164 + (TG)n Simple_repeat Simple_repeat 1 49 0 246 293 132 42 chr13 51922734 51922927 -67821971 - L1ME3A LINE L1 -15 6155 5940 1027 271 47 28 chr13 51922985 51923200 -67821698 - L1MD2 LINE L1 -387 5783 5692 2168 128 0 0 chr13 51923200 51923504 -67821394 - AluSx SINE Alu -8 304 1 1027 271 47 28 chr13 51923504 51923732 -67821166 - L1MD2 LINE L1 -478 5692 5470 459 223 151 7 chr13 51924852 51924991 -67819907 + MER5A DNA MER1_type 30 188 -1 233 233 93 12 chr13 51925475 51925561 -67819337 + MER5A DNA MER1_type 65 157 -32 2516 81 0 0 chr13 51925648 51925958 -67818940 - AluY SINE Alu -1 310 1 2329 75 0 7 chr13 51926022 51926317 -67818581 - AluY SINE Alu -18 293 1 1033 169 27 0 chr13 51926393 51926577 -67818321 + MER5A DNA MER1_type 1 189 0 417 304 107 18 chr13 51927133 51927301 -67817597 - MIR3 SINE MIR -4 204 22 591 251 48 18 chr13 51927628 51927795 -67817103 + MER45A DNA AcHobo 1 172 -6 436 207 95 101 chr13 51927956 51928125 -67816773 - MIR SINE MIR -90 172 5 253 360 103 7 chr13 51928733 51928869 -67816029 - L2 LINE L2 -3 3269 3121 236 250 0 0 chr13 51931538 51931602 -67813296 + L1MC4a LINE L1 5869 5932 -1876 2465 63 3 0 chr13 51931703 51932004 -67812894 + AluSp SINE Alu 2 303 -10 288 308 57 13 chr13 51932574 51932733 -67812165 + L3 LINE CR1 1316 1481 -96 764 185 96 11 chr13 51932750 51932928 -67811970 + Charlie5 DNA MER1_type 1 193 -2419 701 197 0 8 chr13 51932946 51933068 -67811830 - FLAM_A SINE Alu -8 125 5 779 183 143 0 chr13 51933091 51933321 -67811577 + Charlie5 DNA MER1_type 2354 2616 0 331 330 94 9 chr13 51935174 51935205 -67809693 - MIR SINE MIR -27 235 208 2087 106 35 0 chr13 51935205 51935488 -67809410 - AluSx SINE Alu -19 293 1 331 330 94 9 chr13 51935488 51935668 -67809230 - MIR SINE MIR -54 208 6 298 304 161 0 chr13 51935655 51935823 -67809075 - L3b LINE CR1 -168 1415 1221 * 238 330 0 10 chr13 51936062 51936159 -67808739 - L2 LINE L2 -182 3090 2995 2191 79 0 4 chr13 51936444 51936711 -67808187 + AluY SINE Alu 1 266 -45 329 175 63 0 chr13 51936818 51936881 -67808017 + Alu SINE Alu 235 301 -1 439 258 78 14 chr13 51937023 51937352 -67807546 - L1MB8 LINE L1 -151 6013 5668 1497 205 81 40 chr13 51938023 51938467 -67806431 - MLT1C LTR MaLR 0 467 6 2549 153 61 67 chr13 51938974 51939093 -67805805 + MLT1D LTR MaLR 1 119 -386 2159 197 76 5 chr13 51939093 51939529 -67805369 - MLT1C LTR MaLR 0 467 1 2549 153 61 67 chr13 51939529 51939600 -67805298 + MLT1D LTR MaLR 119 189 -316 1687 176 39 23 chr13 51939600 51939906 -67804992 + AluJo SINE Alu 1 311 -1 2549 153 61 67 chr13 51939906 51940222 -67804676 + MLT1D LTR MaLR 189 505 0 2250 76 40 23 chr13 51940473 51940777 -67804121 - AluY SINE Alu -2 309 1 347 320 67 13 chr13 51940911 51941061 -67803837 - MIR3 SINE MIR -32 176 19 180 0 0 0 chr13 51941345 51941365 -67803533 + (T)n Simple_repeat Simple_repeat 1 20 0 370 253 18 46 chr13 51941704 51941852 -67803046 + MIR SINE MIR 31 176 -55 2296 106 3 0 chr13 51941927 51942220 -67802678 + AluSg SINE Alu 1 294 -16 1718 169 121 6 chr13 51942275 51942630 -67802268 - MSTD LTR MaLR 0 396 1 818 309 84 54 chr13 51942780 51943096 -67801802 - L2 LINE L2 -219 3053 2748 329 0 24 0 chr13 51943096 51943137 -67801761 + (TG)n Simple_repeat Simple_repeat 1 42 0 818 309 84 54 chr13 51943137 51943684 -67801214 - L2 LINE L2 -524 2748 2154 305 229 36 0 chr13 51943695 51943778 -67801120 - L2 LINE L2 -1293 2021 1936 524 214 119 0 chr13 51943846 51943972 -67800926 - MIR SINE MIR -110 152 12 542 240 23 0 chr13 51944244 51944373 -67800525 - MER94 DNA DNA 0 134 3 1651 214 15 42 chr13 51944374 51944780 -67800118 + MLT2C1 LTR ERVL 3 397 0 451 258 68 0 chr13 51944880 51945028 -67799870 + MER20B DNA MER1_type 37 197 -22 333 0 0 0 chr13 51945284 51945321 -67799577 + (CA)n Simple_repeat Simple_repeat 1 37 0 1734 99 0 5 chr13 51945616 51945839 -67799059 - AluSc SINE Alu -87 222 1 1803 170 13 29 chr13 51946992 51947303 -67797595 - AluJo SINE Alu -6 306 1 198 71 0 0 chr13 51947340 51947368 -67797530 + (CAT)n Simple_repeat Simple_repeat 2 29 0 240 336 95 26 chr13 51947370 51947486 -67797412 - MIR SINE MIR -116 146 23 279 0 0 0 chr13 51948740 51948771 -67796127 + (TG)n Simple_repeat Simple_repeat 1 31 0 864 250 19 5 chr13 51948912 51949124 -67795774 + MER20 DNA MER1_type 5 219 0 346 277 214 14 chr13 51949585 51949805 -67795093 + L2 LINE L2 3050 3313 0 222 250 67 42 chr13 51950821 51950941 -67793957 - L2 LINE L2 0 3313 3191 341 231 12 17 chr13 51951059 51951091 -67793807 + CT-rich Low_complexity Low_complexity 1 32 -922 1838 181 69 82 chr13 51951091 51951296 -67793602 + MLT1D LTR MaLR 1 207 -298 1725 136 54 0 chr13 51951296 51951576 -67793322 + AluJb SINE Alu 5 299 -13 1838 181 69 82 chr13 51951576 51951879 -67793019 + MLT1D LTR MaLR 207 502 -3 341 231 12 17 chr13 51951879 51952019 -67792879 + CT-rich Low_complexity Low_complexity 32 954 0 201 229 0 0 chr13 51952219 51952267 -67792631 + GA-rich Low_complexity Low_complexity 2 49 0 1639 126 4 0 chr13 51952398 51952644 -67792254 - AluSp SINE Alu -10 303 57 377 310 18 127 chr13 51952848 51953132 -67791766 + L2 LINE L2 2980 3232 -40 408 331 172 8 chr13 51953184 51953544 -67791354 - L2 LINE L2 -964 2350 1932 1342 165 84 40 chr13 51954169 51954490 -67790408 - MER2 DNA MER2_type -10 335 1 22 0 0 0 chr13 51955022 51955044 -67789854 + AT_rich Low_complexity Low_complexity 1 22 0 471 315 0 82 chr13 51959202 51959233 -67785665 - L2 LINE L2 0 3272 3240 1820 123 25 0 chr13 51959233 51959535 -67785363 + AluSx SINE Alu 1 309 0 471 315 0 82 chr13 51959535 51959686 -67785212 - L2 LINE L2 -32 3240 3104 261 241 111 46 chr13 51959693 51959801 -67785097 + MIR3 SINE MIR 88 202 -6 202 246 140 79 chr13 51960061 51960175 -67784723 + L2 LINE L2 2149 2269 -1045 180 325 182 39 chr13 51960266 51960469 -67784429 + L2 LINE L2 3082 3313 0 1692 195 0 3 chr13 51960657 51960970 -67783928 + AluJo SINE Alu 1 312 0 265 254 27 45 chr13 51960977 51961087 -67783811 - LTR16C LTR ERVL -34 457 350 345 47 0 0 chr13 51961137 51961180 -67783718 + (CAA)n Simple_repeat Simple_repeat 3 45 0 3269 168 16 5 chr13 51961461 51962016 -67782882 + MER68 LTR ERV1 1 561 -1 1671 169 13 23 chr13 51963135 51963443 -67781455 - AluJo SINE Alu -6 306 2 288 278 127 16 chr13 51963612 51963738 -67781160 + L2 LINE L2 2916 3055 -217 199 292 77 15 chr13 51963731 51963796 -67781102 - MIR SINE MIR -108 100 32 * 846 252 59 28 chr13 51963806 51964060 -67780838 + MIR SINE MIR 1 262 0 292 284 114 0 chr13 51964482 51964570 -67780328 + MIR SINE MIR 34 131 -131 211 209 0 0 chr13 51964666 51964709 -67780189 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 309 253 77 0 chr13 51965953 51966044 -67778854 - MER20B DNA MER1_type -642 141 44 496 315 28 6 chr13 51966515 51966693 -67778205 + MER5A DNA MER1_type 1 182 -7 324 360 58 0 chr13 51966704 51966843 -67778055 - L3 LINE CR1 -59 1518 1372 566 179 132 0 chr13 51967223 51967329 -67777569 + FLAM_A SINE Alu 1 120 -13 864 328 64 48 chr13 51967373 51967892 -67777006 - L3 LINE CR1 -316 1261 735 293 328 66 97 chr13 51968515 51968774 -67776124 - L2 LINE L2 0 3272 3022 1377 202 30 4 chr13 51968875 51969137 -67775761 - THE1A LTR MaLR -86 269 1 213 235 0 0 chr13 51969242 51969293 -67775605 + (TAA)n Simple_repeat Simple_repeat 2 52 0 484 322 40 0 chr13 51969296 51969448 -67775450 - MIR SINE MIR -14 248 91 1166 334 115 18 chr13 51969468 51970297 -67774601 - L2 LINE L2 -505 2809 1901 2115 188 30 26 chr13 51970297 51970760 -67774138 - MLT1C LTR MaLR -2 465 1 181 325 63 40 chr13 51970764 51970890 -67774008 - L2 LINE L2 -1411 1903 1775 4057 102 27 0 chr13 51970890 51971481 -67773417 + L1MA2 LINE L1 5698 6304 0 399 246 52 77 chr13 51971507 51971711 -67773187 + MIR3 SINE MIR 10 205 -57 206 250 50 0 chr13 51972701 51972761 -67772137 - MER5A DNA MER1_type -94 95 33 188 260 68 14 chr13 51972886 51972959 -67771939 - MER5A DNA MER1_type -102 87 11 2111 74 3 11 chr13 51973440 51973752 -67771146 + AluSg1 SINE Alu 1 310 0 271 293 52 9 chr13 51974233 51974349 -67770549 - MIR SINE MIR -70 138 18 279 233 0 0 chr13 51975159 51975219 -67769679 - MER91 DNA MER1_type 0 140 81 305 232 0 0 chr13 51975761 51975817 -67769081 - MIR SINE MIR -61 147 92 203 293 0 81 chr13 51975939 51976038 -67768860 + MIR3 SINE MIR 110 200 -8 318 271 8 85 chr13 51976405 51976534 -67768364 + MER77 LTR ERV1 79 197 -408 * 1083 258 75 95 chr13 51976507 51976918 -67767980 + MER21B LTR ERV1 98 495 -368 1824 164 0 0 chr13 51976918 51977217 -67767681 + AluSx SINE Alu 1 299 -13 1083 258 75 95 chr13 51977217 51977414 -67767484 + MER21B LTR ERV1 495 694 -169 4497 134 14 21 chr13 51977480 51978191 -67766707 - MER50 LTR ERV1 -28 706 1 736 263 96 5 chr13 51978397 51978595 -67766303 + MIR SINE MIR 11 226 -36 5151 74 1 1 chr13 51978599 51979262 -67765636 + L1PA8 LINE L1 5509 6171 -1 536 328 109 13 chr13 51979333 51979571 -67765327 + MIR SINE MIR 2 262 0 300 322 51 0 chr13 51981541 51981659 -67763239 - MIR3 SINE MIR -35 173 50 1172 151 5 19 chr13 51981900 51982105 -67762793 - AluJo SINE Alu -8 304 103 1174 171 88 107 chr13 51982107 51982564 -67762334 - LTR7 LTR ERV1 -2 448 1 3641 116 14 9 chr13 51982564 51983118 -67761780 - HERVH LTR ERV1 0 7713 7157 1569 138 35 0 chr13 51983111 51983372 -67761526 - HERVH LTR ERV1 -1697 6016 5747 * 6686 106 11 8 chr13 51983372 51984662 -67760236 - HERVH LTR ERV1 -2287 4258 3685 484 179 116 45 chr13 51984663 51984775 -67760123 - AluJo SINE Alu -192 120 1 449 285 32 65 chr13 51985080 51985266 -67759632 + MER91A DNA MER1_type 17 196 0 2683 169 40 16 chr13 51985374 51985997 -67758901 - L1MA9 LINE L1 -21 6291 5558 279 0 0 0 chr13 51986160 51986191 -67758707 + (TG)n Simple_repeat Simple_repeat 2 32 0 283 266 138 11 chr13 51987872 51987966 -67756932 - L2 LINE L2 0 3313 3208 214 301 114 41 chr13 51989082 51989205 -67755693 + MIR SINE MIR 11 142 -120 186 227 0 0 chr13 51990399 51990443 -67754455 + CT-rich Low_complexity Low_complexity 5 48 0 265 291 225 35 chr13 51990450 51990588 -67754310 + L2 LINE L2 2553 2663 -651 405 0 0 0 chr13 51990588 51990633 -67754265 + (CA)n Simple_repeat Simple_repeat 2 46 0 265 291 225 35 chr13 51990633 51990752 -67754146 + L2 LINE L2 2663 2859 -455 690 210 61 33 chr13 51991095 51991276 -67753622 - MER53 DNA DNA 0 189 4 354 336 159 28 chr13 51991853 51992136 -67752762 - L1ME LINE L1 -420 5701 5382 288 346 13 44 chr13 51992154 51992313 -67752585 + L2 LINE L2 2709 2862 -452 227 308 143 33 chr13 51992348 51992439 -67752459 + L2 LINE L2 3153 3253 -19 1419 81 4 136 chr13 51993090 51993284 -67751614 + L1PB2 LINE L1 5913 6062 -89 2033 121 24 0 chr13 51993284 51993582 -67751316 + AluSc SINE Alu 1 305 -4 1419 81 4 136 chr13 51993582 51993660 -67751238 + L1PB2 LINE L1 6062 6149 -2 1303 199 0 15 chr13 51995490 51995761 -67749137 - AluJo SINE Alu -6 306 40 203 61 30 0 chr13 51996809 51996842 -67748056 + (TG)n Simple_repeat Simple_repeat 2 35 0 2075 113 23 0 chr13 51997530 51997832 -67747066 - AluSc SINE Alu 0 309 1 229 289 72 58 chr13 51998616 51998910 -67745988 + L2 LINE L2 2924 3303 -10 25 0 0 0 chr13 52001595 52001620 -67743278 + AT_rich Low_complexity Low_complexity 1 25 0 696 196 127 0 chr13 52002213 52002374 -67742524 + MER5A DNA MER1_type 4 189 0 336 292 169 19 chr13 52002550 52002704 -67742194 + MIR SINE MIR 28 204 -58 192 125 0 0 chr13 52002742 52002774 -67742124 + (ATG)n Simple_repeat Simple_repeat 1 32 0 1946 142 3 24 chr13 52002880 52003175 -67741723 + AluJo SINE Alu 9 297 -15 21 0 0 0 chr13 52003731 52003752 -67741146 + AT_rich Low_complexity Low_complexity 1 21 0 783 257 77 18 chr13 52004551 52004773 -67740125 + MIR SINE MIR 2 236 -26 250 231 0 0 chr13 52004884 52004936 -67739962 - L2 LINE L2 0 3313 3262 587 186 10 0 chr13 52005453 52005550 -67739348 - Tigger7 DNA MER2_type -1 2486 2389 * 1719 180 0 0 chr13 52005548 52005815 -67739083 - Tigger7 DNA MER2_type -466 267 1 2453 168 2 57 chr13 52007422 52007881 -67737017 + Tigger2a DNA MER2_type 1 434 0 1979 113 0 45 chr13 52007996 52008306 -67736592 - AluSx SINE Alu -16 296 1 335 252 92 0 chr13 52008479 52008610 -67736288 - HAL1 LINE L1 -360 2147 2005 296 273 73 18 chr13 52008741 52008851 -67736047 + L2 LINE L2 3198 3313 0 2802 105 6 0 chr13 52008949 52009310 -67735588 - THE1B LTR MaLR -1 363 1 373 323 8 8 chr13 52009826 52009953 -67734945 + L2 LINE L2 3164 3290 -23 21 71 0 0 chr13 52010328 52010370 -67734528 + AT_rich Low_complexity Low_complexity 1 42 0 1718 286 65 29 chr13 52010818 52011483 -67733415 - L1ME3A LINE L1 -219 5951 5312 559 214 54 12 chr13 52011483 52011651 -67733247 - MER104 DNA MER2_type -2 178 4 1718 286 65 29 chr13 52011651 52011789 -67733109 - L1ME3A LINE L1 -858 5312 5180 774 172 28 7 chr13 52011789 52011934 -67732964 - L1PA16 LINE L1 -9 6157 6010 1718 286 65 29 chr13 52011934 52012247 -67732651 - L1ME3A LINE L1 -990 5180 4785 459 200 79 55 chr13 52012275 52012440 -67732458 + MER69A DNA AcHobo 9 177 0 997 283 42 30 chr13 52012446 52012940 -67731958 - L1ME3A LINE L1 -1380 4766 4267 2151 97 4 0 chr13 52012940 52013219 -67731679 - AluSg SINE Alu -14 296 17 722 289 98 26 chr13 52013219 52013713 -67731185 - L1ME3A LINE L1 -2451 3695 3169 868 315 87 39 chr13 52013758 52014878 -67730020 - L1ME LINE L1 -454 5716 4525 492 309 0 14 chr13 52017767 52017906 -67726992 - MER5B DNA MER1_type -40 138 2 295 401 94 10 chr13 52017981 52018183 -67726715 + L2 LINE L2 3054 3272 0 191 238 32 48 chr13 52020311 52020374 -67724524 - L2 LINE L2 -10 3303 3242 325 273 173 32 chr13 52020426 52020646 -67724252 + MIR SINE MIR 2 252 -10 218 277 148 0 chr13 52020783 52020884 -67724014 - MIR3 SINE MIR -1 207 92 186 311 165 29 chr13 52020965 52021068 -67723830 - MER5A DNA MER1_type -2 187 71 259 283 158 13 chr13 52021127 52021279 -67723619 + MIR3 SINE MIR 16 189 -19 268 210 99 49 chr13 52021595 52021676 -67723222 - MER103 DNA DNA -13 153 69 475 292 91 8 chr13 52021927 52022170 -67722728 + L3b LINE CR1 1179 1441 -142 720 320 201 20 chr13 52022328 52022816 -67722082 - L3 LINE CR1 -13 1564 989 934 298 159 12 chr13 52023379 52023875 -67721023 - L3 LINE CR1 -595 982 414 382 295 67 99 chr13 52024123 52024435 -67720463 + L2 LINE L2 2886 3187 -85 321 206 192 0 chr13 52024548 52024621 -67720277 + MIR3 SINE MIR 85 171 -37 216 220 187 22 chr13 52024801 52024856 -67720042 + MIR SINE MIR 91 136 -126 2646 123 5 14 chr13 52024856 52025223 -67719675 + THE1B LTR MaLR 1 364 0 216 220 187 22 chr13 52025223 52025258 -67719640 + MIR SINE MIR 136 196 -66 327 215 295 20 chr13 52025331 52025480 -67719418 - MIR SINE MIR -72 190 1 276 324 0 0 chr13 52026146 52026217 -67718681 - MIR SINE MIR -108 154 84 267 348 54 0 chr13 52026379 52026491 -67718407 - MIR SINE MIR -63 145 28 2419 80 3 0 chr13 52027445 52027744 -67717154 - AluSp SINE Alu -1 312 13 1566 270 67 57 chr13 52027766 52028629 -67716269 + L2 LINE L2 2435 3300 -13 180 0 0 0 chr13 52028629 52028649 -67716249 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 688 299 108 0 chr13 52029553 52029784 -67715114 + MIR SINE MIR 7 262 0 183 85 64 0 chr13 52029971 52030018 -67714880 + (TA)n Simple_repeat Simple_repeat 2 51 0 2402 42 0 7 chr13 52031219 52031528 -67713370 - AluY SINE Alu 0 307 1 601 285 26 0 chr13 52032173 52032324 -67712574 - L2 LINE L2 -1 3312 3158 547 204 15 83 chr13 52032339 52032471 -67712427 + L2 LINE L2 3189 3311 -2 762 345 72 17 chr13 52032505 52032966 -67711932 - L2 LINE L2 -437 2877 2392 192 40 0 0 chr13 52033229 52033254 -67711644 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 1528 184 32 23 chr13 52033264 52033573 -67711325 - AluJo SINE Alu 0 312 1 245 271 59 12 chr13 52034808 52034893 -67710005 + L2 LINE L2 3166 3254 -18 2186 119 0 0 chr13 52035723 52036017 -67708881 - AluSx SINE Alu -18 294 1 194 236 69 42 chr13 52036136 52036208 -67708690 + MIR SINE MIR 110 183 -79 2025 169 107 26 chr13 52037886 52038305 -67706593 - MLT2C2 LTR ERVL -11 453 1 2313 99 3 19 chr13 52038500 52038814 -67706084 - AluSx SINE Alu -3 309 1 2133 117 0 0 chr13 52038917 52039243 -67705655 - AluSg SINE Alu 0 326 1 656 242 37 64 chr13 52039244 52039541 -67705357 - L1ME3A LINE L1 -6 6164 5876 2017 185 52 79 chr13 52041005 52041524 -67703374 + MLT1D LTR MaLR 1 505 0 352 316 34 17 chr13 52041524 52041641 -67703257 + L2 LINE L2 3142 3260 -12 21 36 0 0 chr13 52042160 52042188 -67702710 + AT_rich Low_complexity Low_complexity 1 28 0 334 260 39 0 chr13 52042602 52042706 -67702192 + MIR3 SINE MIR 51 158 -50 228 301 19 19 chr13 52042735 52042838 -67702060 + L2 LINE L2 2728 2830 -484 1271 166 38 76 chr13 52043228 52043542 -67701356 + MER33 DNA MER1_type 1 302 -22 3308 278 72 26 chr13 52044482 52044831 -67700067 + L2 LINE L2 1759 2091 -1222 396 0 0 0 chr13 52044831 52044875 -67700023 + (TG)n Simple_repeat Simple_repeat 1 44 0 1562 179 3 41 chr13 52044875 52045165 -67699733 - AluJo SINE Alu -33 279 1 3308 278 72 26 chr13 52045165 52046304 -67698594 + L2 LINE L2 2090 3312 -1 374 152 0 13 chr13 52046395 52046474 -67698424 + (CA)n Simple_repeat Simple_repeat 1 78 0 803 180 60 7 chr13 52047067 52047217 -67697681 + MER45A DNA AcHobo 2 159 -19 568 304 33 49 chr13 52047655 52047898 -67697000 - MER102b DNA MER1_type 0 341 103 1608 163 42 10 chr13 52048227 52048540 -67696358 - MER33 DNA MER1_type -1 323 1 1333 224 76 14 chr13 52048710 52049054 -67695844 - MLT1A1 LTR MaLR 0 365 1 293 330 85 0 chr13 52050281 52050375 -67694523 - L2 LINE L2 -13 3259 3158 1823 178 7 0 chr13 52052244 52052548 -67692350 - AluJb SINE Alu -6 306 1 189 226 0 0 chr13 52053681 52053734 -67691164 + (CCCCAG)n Simple_repeat Simple_repeat 3 55 0 337 265 93 62 chr13 52054004 52054166 -67690732 - MER5B DNA MER1_type -6 172 6 418 265 70 49 chr13 52054952 52055011 -67689887 - MIR SINE MIR -10 252 196 2404 100 0 0 chr13 52055011 52055321 -67689577 - AluSg SINE Alu 0 310 1 418 265 70 49 chr13 52055321 52055446 -67689452 - MIR SINE MIR -66 196 64 229 200 40 20 chr13 52056339 52056389 -67688509 - L1PBa LINE L1 -6188 675 625 392 265 241 0 chr13 52058264 52058434 -67686464 - MIR SINE MIR -11 251 41 2623 43 10 0 chr13 52058499 52058802 -67686096 + AluY SINE Alu 1 306 -5 287 317 24 21 chr13 52059541 52059749 -67685149 + CT-rich Low_complexity Low_complexity 1 208 0 277 325 7 33 chr13 52059803 52059954 -67684944 + CT-rich Low_complexity Low_complexity 4 150 0 1935 126 0 10 chr13 52060036 52060338 -67684560 - L1MA2 LINE L1 0 6304 6006 304 292 15 46 chr13 52061486 52061675 -67683223 - MIR3 SINE MIR -59 149 1 370 306 163 6 chr13 52062267 52062427 -67682471 - MIR SINE MIR -48 214 30 391 113 99 28 chr13 52062893 52062964 -67681934 - MER20 DNA MER1_type -77 142 67 1954 162 26 3 chr13 52063026 52063366 -67681532 - MER7A DNA MER2_type 0 346 1 1203 235 68 9 chr13 52064119 52064443 -67680455 - MER2 DNA MER2_type -1 343 1 967 186 48 11 chr13 52065294 52065482 -67679416 + MER20 DNA MER1_type 21 215 -4 4768 134 15 9 chr13 52065588 52066343 -67678555 + L1PA13 LINE L1 5386 6144 -19 205 213 21 0 chr13 52068420 52068467 -67676431 + CT-rich Low_complexity Low_complexity 4 51 0 379 214 22 0 chr13 52068769 52068858 -67676040 + MIR SINE MIR 118 208 -54 205 383 35 14 chr13 52069686 52069827 -67675071 - MIR3 SINE MIR -30 178 35 257 232 37 12 chr13 52071287 52071369 -67673529 - L2 LINE L2 0 3313 3230 389 245 108 0 chr13 52071468 52071607 -67673291 - MIR SINE MIR -56 206 53 294 276 20 0 chr13 52072398 52072496 -67672402 + (TAG)n Simple_repeat Simple_repeat 1 100 0 31 0 0 0 chr13 52072919 52072950 -67671948 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr13 52076789 52076817 -67668081 + AT_rich Low_complexity Low_complexity 1 28 0 1197 250 11 11 chr13 52077861 52078141 -67666757 - L1ME1 LINE L1 -10 6156 5877 464 324 36 31 chr13 52078468 52078693 -67666205 + MIR SINE MIR 6 231 -31 816 164 0 14 chr13 52079947 52080093 -67664805 - L1MA9 LINE L1 0 6312 6169 869 261 105 17 chr13 52080471 52080766 -67664132 - MLT1J2 LTR MaLR -121 329 9 1820 146 0 57 chr13 52081436 52081751 -67663147 - AluSx SINE Alu -15 297 1 2308 179 65 70 chr13 52081937 52082552 -67662346 - LTR9 LTR ERV1 0 612 1 1712 167 29 0 chr13 52084193 52084319 -67660579 + AluJb SINE Alu 1 122 -190 225 0 0 0 chr13 52084319 52084344 -67660554 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1712 167 29 0 chr13 52084344 52084492 -67660406 + AluJb SINE Alu 122 283 -29 450 232 0 11 chr13 52084496 52084591 -67660307 - MER94 DNA DNA -40 94 1 250 139 0 0 chr13 52085177 52085220 -67659678 - MER4-int LTR ERV1 -5444 1154 1112 572 252 130 17 chr13 52085255 52085485 -67659413 + MIR SINE MIR 1 256 -6 533 267 19 19 chr13 52086545 52086706 -67658192 - MIR3 SINE MIR 0 208 48 492 307 62 33 chr13 52087169 52087407 -67657491 + MIR SINE MIR 9 260 -2 276 234 105 24 chr13 52087548 52087672 -67657226 - L1ME4a LINE L1 -178 5943 5810 672 228 118 29 chr13 52087754 52088000 -67656898 - L1ME4a LINE L1 -294 5827 5560 2142 146 0 0 chr13 52088697 52088998 -67655900 - AluSx SINE Alu -11 301 1 257 343 10 0 chr13 52089015 52089117 -67655781 + L2 LINE L2 2628 2730 -584 523 259 60 50 chr13 52089811 52090012 -67654886 - MIR SINE MIR -13 249 47 216 175 0 0 chr13 52090495 52090535 -67654363 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 320 234 47 104 chr13 52090589 52090681 -67654217 + MIR SINE MIR 63 159 -103 1392 249 92 9 chr13 52090681 52091106 -67653792 - LTR40b LTR ERVL 0 462 3 320 234 47 104 chr13 52091106 52091156 -67653742 + MIR SINE MIR 159 194 -68 1293 208 102 47 chr13 52091156 52091540 -67653358 - MLT1I LTR MaLR -2 407 3 320 234 47 104 chr13 52091540 52091588 -67653310 + MIR SINE MIR 194 243 -19 22 56 0 0 chr13 52091760 52091796 -67653102 + AT_rich Low_complexity Low_complexity 1 36 0 245 378 8 8 chr13 52092103 52092222 -67652676 - L2 LINE L2 -18 3254 3136 202 274 94 66 chr13 52092604 52092816 -67652082 - MIR SINE MIR -13 249 32 218 291 146 18 chr13 52093042 52093152 -67651746 - L2 LINE L2 -8 3264 3141 255 343 29 29 chr13 52094519 52094659 -67650239 + L2 LINE L2 2606 2745 -569 233 376 40 8 chr13 52095019 52095144 -67649754 + L2 LINE L2 3144 3272 0 267 357 13 6 chr13 52095359 52095516 -67649382 - L2 LINE L2 0 3313 3156 240 291 253 11 chr13 52095518 52095803 -67649095 - L2 LINE L2 -472 2842 2489 497 301 57 16 chr13 52096114 52096307 -67648591 + MIR SINE MIR 8 208 -54 530 210 133 0 chr13 52096961 52097104 -67647794 + MER117 DNA MER1_type 36 197 0 756 177 15 8 chr13 52097548 52097678 -67647220 - FRAM SINE Alu -45 131 1 227 348 43 0 chr13 52097787 52097902 -67646996 - MIR SINE MIR -80 182 63 283 278 289 0 chr13 52099008 52099181 -67645717 + MIR SINE MIR 40 262 0 504 214 22 72 chr13 52099517 52099713 -67645185 - MIR SINE MIR -62 146 3 846 234 99 13 chr13 52100704 52100947 -67643951 + MIR SINE MIR 3 249 -13 2564 128 61 10 chr13 52102249 52102656 -67642242 - MSTA LTR MaLR 0 428 1 182 322 115 23 chr13 52102851 52102938 -67641960 - L2 LINE L2 -8 3305 3211 205 254 228 9 chr13 52105139 52105253 -67639645 + MIR SINE MIR 36 174 -88 2817 128 24 13 chr13 52105406 52105868 -67639030 + MLT1C LTR MaLR 1 467 0 286 228 81 40 chr13 52105872 52106021 -67638877 - MER103 DNA DNA -9 157 3 187 333 13 27 chr13 52106589 52106664 -67638234 - L2 LINE L2 -262 3010 2937 30 45 0 0 chr13 52106944 52106988 -67637910 + AT_rich Low_complexity Low_complexity 1 44 0 282 299 0 0 chr13 52107101 52107168 -67637730 + (CA)n Simple_repeat Simple_repeat 2 68 0 557 312 141 20 chr13 52107233 52108093 -67636805 - L1MC4a LINE L1 -397 5724 4903 255 319 37 22 chr13 52108948 52109083 -67635815 + L1MEd LINE L1 480 616 -5503 240 286 62 49 chr13 52109145 52109369 -67635529 + HAL1 LINE L1 1383 1609 -898 213 65 0 0 chr13 52109371 52109402 -67635496 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2186 102 46 0 chr13 52109418 52109703 -67635195 - AluSq SINE Alu -15 298 1 333 0 0 0 chr13 52110211 52110248 -67634650 + (TC)n Simple_repeat Simple_repeat 2 38 0 254 182 0 0 chr13 52110248 52110314 -67634584 - L1MC4 LINE L1 -1341 6701 6636 * 320 202 0 43 chr13 52110260 52110354 -67634544 + L1MC4 LINE L1 6614 6703 -1339 505 244 87 35 chr13 52110776 52111005 -67633893 + MLT1L LTR MaLR 370 610 -5 270 306 106 4 chr13 52111147 52111422 -67633476 + L1MEd LINE L1 2204 2506 -3623 695 284 99 34 chr13 52111426 52112402 -67632496 + L1M4 LINE L1 4349 5388 -758 196 306 35 12 chr13 52112603 52112688 -67632210 + L2 LINE L2 3186 3272 0 189 339 96 71 chr13 52112710 52112949 -67631949 + L2 LINE L2 3021 3265 -7 207 0 0 0 chr13 52114649 52114672 -67630226 + (TA)n Simple_repeat Simple_repeat 1 23 0 198 0 0 0 chr13 52114672 52114694 -67630204 + (TG)n Simple_repeat Simple_repeat 2 23 0 466 355 94 41 chr13 52115979 52117074 -67627824 - L2 LINE L2 0 3272 2026 214 211 0 0 chr13 52117122 52117160 -67627738 + L2 LINE L2 2323 2360 -954 245 295 38 19 chr13 52117437 52117542 -67627356 + L2 LINE L2 2697 2803 -511 31064 23 0 0 chr13 52118408 52123045 -67621853 - L1PA2 LINE L1 -1 6154 1517 191 255 0 0 chr13 52123833 52123880 -67621018 - MIR SINE MIR -1 261 215 406 272 88 7 chr13 52123976 52124123 -67620775 - MER63A DNA MER1_type -1 209 51 1335 259 124 19 chr13 52124156 52124638 -67620260 - MLT2E LTR ERVL -95 533 1 187 364 185 0 chr13 52124640 52124791 -67620107 - MIR SINE MIR -82 180 2 181 385 36 12 chr13 52125008 52125091 -67619807 - L2 LINE L2 -61 3211 3127 769 177 0 8 chr13 52125122 52125252 -67619646 - FLAM_C SINE Alu -4 129 1 421 279 49 16 chr13 52127726 52127848 -67617050 - L2 LINE L2 -1 3271 3146 342 341 103 1 chr13 52127844 52128004 -67616894 - MIR3 SINE MIR -14 194 18 * 222 204 0 0 chr13 52128025 52128069 -67616829 - L2 LINE L2 0 3313 3270 27 29 0 0 chr13 52128585 52128619 -67616279 + AT_rich Low_complexity Low_complexity 1 34 0 658 245 90 138 chr13 52128869 52129448 -67615450 - MLT1G3 LTR MaLR -42 553 3 4218 121 16 14 chr13 52129688 52130383 -67614515 - MER50 LTR ERV1 -37 697 2 2589 133 84 80 chr13 52130452 52130965 -67613933 + MLT2B2 LTR ERVL 1 515 0 21 57 0 0 chr13 52131445 52131480 -67613418 + AT_rich Low_complexity Low_complexity 1 35 0 719 301 46 27 chr13 52131483 52131965 -67612933 - L1ME4a LINE L1 -1 6120 5630 2181 130 20 66 chr13 52132333 52132742 -67612156 - MLT1B LTR MaLR 0 390 1 2254 232 24 27 chr13 52133020 52133697 -67611201 + L1ME2 LINE L1 5488 6162 -2 770 284 126 31 chr13 52133971 52134359 -67610539 - L2 LINE L2 -31 3282 2858 435 292 55 32 chr13 52134852 52135050 -67609848 - MIR SINE MIR -49 213 1 74 12 0 0 chr13 52137804 52137885 -67607013 + AT_rich Low_complexity Low_complexity 1 81 0 1784 235 94 31 chr13 52137915 52138138 -67606760 - L1ME3A LINE L1 -6 6164 5957 1760 165 3 21 chr13 52138138 52138429 -67606469 + AluJb SINE Alu 1 286 -26 452 16 0 32 chr13 52138432 52138494 -67606404 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 1784 235 94 31 chr13 52138494 52138943 -67605955 - L1ME3A LINE L1 -214 5956 5445 367 335 77 14 chr13 52139692 52139913 -67604985 - MLT1L LTR MaLR -129 486 252 916 227 203 10 chr13 52140022 52140313 -67604585 - MLT1F LTR MaLR -60 482 136 1254 182 121 67 chr13 52140318 52140664 -67604234 + MLT1A1 LTR MaLR 1 365 0 273 146 0 0 chr13 52140684 52140732 -67604166 - MLT1F LTR MaLR -518 49 2 2257 121 25 25 chr13 52141530 52141894 -67603004 - THE1B LTR MaLR 0 364 1 11417 93 14 21 chr13 52141894 52143484 -67601414 - THE1B-int LTR MaLR 0 1580 1 2108 132 48 25 chr13 52143484 52143840 -67601058 - THE1B LTR MaLR 0 364 1 629 287 89 40 chr13 52143895 52144073 -67600825 + L1ME4a LINE L1 5318 5486 -635 2383 93 0 0 chr13 52144073 52144374 -67600524 + AluY SINE Alu 1 301 -10 629 287 89 40 chr13 52144374 52144851 -67600047 + L1ME4a LINE L1 5486 6008 -113 339 96 0 0 chr13 52145026 52145078 -67599820 + (TG)n Simple_repeat Simple_repeat 1 52 0 469 192 128 32 chr13 52145397 52145522 -67599376 - MIR SINE MIR -2 260 124 231 250 111 0 chr13 52147107 52147215 -67597683 - L1ME4a LINE L1 0 6121 6002 411 306 201 10 chr13 52147347 52147556 -67597342 + MIR SINE MIR 12 260 -2 414 0 0 0 chr13 52147654 52147700 -67597198 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 450 0 0 0 chr13 52147699 52147749 -67597149 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1824 172 0 22 chr13 52148514 52148828 -67596070 + AluJb SINE Alu 1 307 -5 501 245 61 74 chr13 52148850 52149312 -67595586 - L1MC5 LINE L1 -54 7907 7452 210 357 124 0 chr13 52150157 52150286 -67594612 + L2 LINE L2 2939 3083 -189 2200 106 0 17 chr13 52150560 52150861 -67594037 - AluSq SINE Alu -17 296 1 842 216 11 21 chr13 52150971 52151161 -67593737 - MIR SINE MIR -44 218 31 326 250 0 0 chr13 52152216 52152280 -67592618 + MER81 DNA DNA 15 78 -36 320 274 62 128 chr13 52152575 52153047 -67591851 - L2 LINE L2 -45 3227 2786 465 280 59 29 chr13 52153134 52153469 -67591429 + MLT1L LTR MaLR 149 584 -31 252 365 79 8 chr13 52153638 52153764 -67591134 - L2 LINE L2 0 3272 3138 1735 142 19 68 chr13 52154832 52155143 -67589755 + AluJo SINE Alu 3 298 -14 544 250 12 6 chr13 52155292 52155452 -67589446 - HAL1b LINE L1 -7 1341 1181 21 0 0 0 chr13 52155491 52155512 -67589386 + AT_rich Low_complexity Low_complexity 1 21 0 474 221 31 72 chr13 52155751 52155946 -67588952 - HAL1b LINE L1 -569 779 593 537 223 128 95 chr13 52156539 52156812 -67588086 + MER102a DNA MER1_type 48 329 -1 358 328 74 0 chr13 52156888 52157010 -67587888 - L2 LINE L2 -19 3253 3123 505 245 93 65 chr13 52157584 52157906 -67586992 - HAL1 LINE L1 -1055 1452 1122 385 251 69 44 chr13 52158055 52158258 -67586640 - MIR SINE MIR -50 212 5 246 32 0 0 chr13 52158751 52158782 -67586116 + (TG)n Simple_repeat Simple_repeat 1 31 0 289 322 268 23 chr13 52159552 52159906 -67584992 + L3 LINE CR1 1054 1494 -83 1025 298 37 16 chr13 52159970 52160346 -67584552 + L2 LINE L2 1793 2176 -1138 821 237 101 18 chr13 52160348 52160782 -67584116 + MLT1G LTR MaLR 1 590 0 944 291 124 42 chr13 52160783 52161257 -67583641 + L2 LINE L2 2175 2687 -627 1193 230 139 91 chr13 52161257 52161774 -67583124 - MLT1E LTR MaLR 0 542 1 560 316 50 31 chr13 52161779 52162255 -67582643 + L2 LINE L2 2686 3169 -144 655 248 218 5 chr13 52162471 52162673 -67582225 - MIR SINE MIR 0 262 18 236 120 20 0 chr13 52163956 52164006 -67580892 + GA-rich Low_complexity Low_complexity 1 51 0 2282 98 0 0 chr13 52164726 52165021 -67579877 + AluSx SINE Alu 1 295 -17 1277 261 67 8 chr13 52165273 52165664 -67579234 - MLT1C LTR MaLR 0 467 54 196 329 40 26 chr13 52166449 52166525 -67578373 - L3b LINE CR1 -87 1496 1420 331 364 30 20 chr13 52167160 52167358 -67577540 + L2 LINE L2 2830 3029 -243 1736 221 6 14 chr13 52167704 52168066 -67576832 + L1PB4 LINE L1 5797 6155 -1 213 39 0 0 chr13 52168534 52168560 -67576338 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 2265 104 3 3 chr13 52170135 52170442 -67574456 + AluSq SINE Alu 3 309 -4 1692 114 9 0 chr13 52170837 52171064 -67573834 + MER30 DNA MER1_type 2 230 0 27 29 0 0 chr13 52171440 52171474 -67573424 + AT_rich Low_complexity Low_complexity 1 34 0 334 255 104 19 chr13 52171666 52171772 -67573126 - L2 LINE L2 -5 3267 3153 2168 112 0 13 chr13 52173214 52173519 -67571379 - AluSx SINE Alu -11 301 1 1905 112 11 0 chr13 52175596 52175856 -67569042 + AluSx SINE Alu 49 311 -1 471 208 14 111 chr13 52175879 52175917 -67568981 - LTR41 LTR ERVL -6 767 727 2289 129 23 12 chr13 52175917 52176259 -67568639 + MER7A DNA MER2_type 2 345 -1 471 208 14 111 chr13 52176259 52176427 -67568471 - LTR41 LTR ERVL -46 727 581 689 209 58 17 chr13 52176659 52176831 -67568067 - LTR41 LTR ERVL -594 179 1 642 183 19 0 chr13 52177440 52177544 -67567354 - FLAM_A SINE Alu -23 119 14 256 294 79 40 chr13 52178041 52178167 -67566731 - L2 LINE L2 -1 3271 3141 985 170 0 12 chr13 52178830 52178995 -67565903 + AluJb SINE Alu 137 299 -13 394 266 84 37 chr13 52179035 52179249 -67565649 + MARNA DNA Mariner 21 244 -342 2801 169 24 2 chr13 52179851 52180308 -67564590 - MLT1C LTR MaLR 0 467 1 439 214 11 0 chr13 52180746 52180835 -67564063 - MLT1I LTR MaLR 0 409 320 360 265 111 39 chr13 52181013 52181194 -67563704 - L2 LINE L2 -16 3297 3104 837 259 172 29 chr13 52181340 52181799 -67563099 - MLT1G1 LTR MaLR 0 595 20 463 310 94 92 chr13 52181880 52182425 -67562473 - MLT1G1-int LTR MaLR -70 1301 756 284 221 78 13 chr13 52183103 52183180 -67561718 - MLT1G1-int LTR MaLR -1285 86 5 835 161 13 13 chr13 52183486 52183710 -67561188 + CT-rich Low_complexity Low_complexity 1 224 0 2221 113 0 7 chr13 52184776 52185086 -67559812 - AluSc SINE Alu -1 308 1 1772 156 0 48 chr13 52185328 52185642 -67559256 - AluJb SINE Alu -5 307 9 28 29 0 0 chr13 52186711 52186746 -67558152 + AT_rich Low_complexity Low_complexity 1 35 0 2103 126 0 0 chr13 52186747 52187033 -67557865 - AluSx SINE Alu -26 286 1 2755 105 6 0 chr13 52187410 52187763 -67557135 - THE1A LTR MaLR 0 355 1 10199 95 96 1 chr13 52187763 52189206 -67555692 - THE1A-int LTR MaLR 0 1580 1 2694 91 41 0 chr13 52189206 52189547 -67555351 - THE1A LTR MaLR 0 355 1 24 0 0 0 chr13 52191134 52191158 -67553740 + AT_rich Low_complexity Low_complexity 1 24 0 262 275 99 0 chr13 52191161 52191252 -67553646 - MARNA DNA Mariner -64 522 423 283 369 60 24 chr13 52191524 52191692 -67553206 - MER5A DNA MER1_type -6 183 10 455 277 185 11 chr13 52191819 52192003 -67552895 + MIR SINE MIR 42 257 -5 200 277 43 0 chr13 52192929 52193023 -67551875 + (TA)n Simple_repeat Simple_repeat 2 99 0 285 75 0 0 chr13 52194186 52194226 -67550672 + (TG)n Simple_repeat Simple_repeat 1 40 0 * 311 0 26 0 chr13 52194225 52194264 -67550634 + (GA)n Simple_repeat Simple_repeat 1 40 0 302 283 0 11 chr13 52194281 52194373 -67550525 + (TG)n Simple_repeat Simple_repeat 2 92 0 253 390 150 4 chr13 52195108 52195354 -67549544 - L2 LINE L2 -4 3268 2987 2131 103 3 45 chr13 52197480 52197790 -67547108 - AluSq SINE Alu -16 297 1 2130 117 3 0 chr13 52197801 52198099 -67546799 - AluSx SINE Alu -11 301 3 551 338 61 20 chr13 52198172 52198468 -67546430 + L2 LINE L2 2165 2472 -842 430 341 92 63 chr13 52198451 52198735 -67546163 + L2 LINE L2 2981 3272 0 * 252 200 0 0 chr13 52199849 52199904 -67544994 + (TG)n Simple_repeat Simple_repeat 2 56 0 458 85 0 0 chr13 52199932 52199991 -67544907 - LTR12 LTR ERV1 0 714 656 271 211 0 0 chr13 52199993 52200045 -67544853 + LTR30 LTR ERV1 1 52 -670 1102 78 131 89 chr13 52200045 52200236 -67544662 + LTR12 LTR ERV1 53 251 -463 394 246 41 0 chr13 52200236 52200358 -67544540 + LTR30 LTR ERV1 517 643 -79 1430 119 10 0 chr13 52200358 52200560 -67544338 + LTR12 LTR ERV1 377 580 -134 2311 115 0 3 chr13 52200620 52200932 -67543966 + AluSx SINE Alu 1 311 -1 1266 236 98 9 chr13 52200983 52201318 -67543580 - MLT1A1 LTR MaLR 0 365 1 421 320 19 6 chr13 52201349 52201505 -67543393 + LTR16A1 LTR ERVL 1 158 -299 538 288 149 45 chr13 52202347 52202486 -67542412 + L1MEc LINE L1 975 1098 -5298 332 71 18 0 chr13 52202486 52202542 -67542356 + (CAA)n Simple_repeat Simple_repeat 2 58 0 538 288 149 45 chr13 52202542 52203165 -67541733 + L1MEc LINE L1 1098 1817 -4579 1090 258 99 59 chr13 52203319 52204297 -67540601 + L1MEc LINE L1 2028 2999 -3216 24 0 0 0 chr13 52204524 52204548 -67540350 + AT_rich Low_complexity Low_complexity 1 24 0 1799 129 0 15 chr13 52204628 52204899 -67539999 - AluSx SINE Alu -18 294 28 1548 101 0 10 chr13 52206645 52206876 -67538022 + AluSc SINE Alu 82 310 0 296 347 14 61 chr13 52206876 52207015 -67537883 + MIR3 SINE MIR 20 154 -54 500 213 83 30 chr13 52207658 52207894 -67537004 + MLT1H LTR MaLR 301 549 0 311 292 149 10 chr13 52208518 52208713 -67536185 + L1ME LINE L1 98 319 -6077 1177 30 0 0 chr13 52208796 52208930 -67535968 - AluY SINE Alu -19 292 159 244 57 0 0 chr13 52208930 52208965 -67535933 + Alu SINE Alu 107 141 -160 2238 129 32 45 chr13 52209149 52209529 -67535369 - THE1C LTR MaLR 0 375 1 3936 250 50 31 chr13 52209769 52211423 -67533475 + L1ME LINE L1 3742 5426 -789 3072 203 33 37 chr13 52211416 52212302 -67532596 + L1ME2 LINE L1 5262 6143 -21 * 439 264 90 30 chr13 52212518 52212719 -67532179 - MIR SINE MIR -49 213 1 780 262 73 13 chr13 52212986 52213192 -67531706 + L1ME LINE L1 5599 5822 -417 1018 257 157 13 chr13 52213192 52213639 -67531259 + MLT1J LTR MaLR 1 511 0 780 262 73 13 chr13 52213639 52213701 -67531197 + L1ME LINE L1 5822 5879 -360 195 129 0 0 chr13 52213796 52213827 -67531071 + (TA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr13 52213879 52213909 -67530989 + AT_rich Low_complexity Low_complexity 1 30 0 576 313 69 26 chr13 52214383 52214616 -67530282 - MIR SINE MIR -14 248 6 198 390 70 0 chr13 52214893 52214993 -67529905 - L2 LINE L2 -199 3114 3008 378 241 214 9 chr13 52215039 52215151 -67529747 + MER5A DNA MER1_type 55 189 0 180 336 149 25 chr13 52215187 52215422 -67529476 - L2 LINE L2 -337 2977 2714 181 302 81 12 chr13 52215687 52215773 -67529125 + L3 LINE CR1 968 1059 -518 735 308 124 28 chr13 52217557 52218018 -67526880 - MLT1K LTR MaLR -28 560 56 21 36 0 0 chr13 52218116 52218144 -67526754 + AT_rich Low_complexity Low_complexity 1 28 0 281 291 94 26 chr13 52218356 52218473 -67526425 - L2 LINE L2 -9 3263 3139 183 319 184 35 chr13 52218554 52218695 -67526203 - MIR SINE MIR -34 228 67 26 0 0 0 chr13 52219047 52219073 -67525825 + AT_rich Low_complexity Low_complexity 1 26 0 2018 134 20 0 chr13 52219447 52219739 -67525159 - AluSx SINE Alu -14 298 1 1865 144 3 56 chr13 52220062 52220382 -67524516 - AluJo SINE Alu -9 303 1 2485 80 0 0 chr13 52220552 52220851 -67524047 - AluSg SINE Alu -11 299 1 31 0 0 0 chr13 52220962 52220993 -67523905 + AT_rich Low_complexity Low_complexity 1 31 0 372 293 124 102 chr13 52225771 52225811 -67519087 - L1M2 LINE L1 -5479 1370 1332 372 43 0 0 chr13 52225811 52225857 -67519041 + (CCG)n Simple_repeat Simple_repeat 2 47 0 372 293 124 102 chr13 52225857 52226563 -67518335 - L1M2 LINE L1 -5517 1332 607 411 203 0 0 chr13 52228100 52228179 -67516719 - MLT1A2 LTR MaLR 0 374 296 262 324 99 9 chr13 52228584 52228695 -67516203 - L3 LINE CR1 -408 1169 1049 * 1874 283 61 25 chr13 52228690 52229207 -67515691 + L2 LINE L2 2253 2824 -489 1747 259 77 16 chr13 52229207 52229763 -67515135 - MLT1G LTR MaLR 0 590 1 1874 283 61 25 chr13 52229763 52230141 -67514757 + L2 LINE L2 2824 3187 -126 250 270 96 70 chr13 52230233 52230348 -67514550 - L3 LINE CR1 -511 1066 949 980 258 12 12 chr13 52230684 52230932 -67513966 - MIR SINE MIR -10 252 5 306 98 0 0 chr13 52232502 52232553 -67512345 + (GA)n Simple_repeat Simple_repeat 1 51 0 451 209 12 22 chr13 52232894 52233044 -67511854 - MER3 DNA MER1_type 0 209 1 607 269 66 16 chr13 52233980 52234172 -67510726 - MIR SINE MIR 0 262 64 2025 146 3 3 chr13 52234189 52234483 -67510415 + AluJb SINE Alu 1 294 -18 575 265 19 0 chr13 52234493 52234655 -67510243 - L1ME3 LINE L1 -26 6136 5972 2875 154 55 98 chr13 52234657 52235422 -67509476 + L1MA9 LINE L1 5545 6276 -36 1028 245 98 0 chr13 52235441 52235788 -67509110 - L1ME3 LINE L1 -177 5985 5605 751 191 0 0 chr13 52235807 52235938 -67508960 - FLAM_A SINE Alu -2 131 1 517 290 32 0 chr13 52237059 52237214 -67507684 + MIR SINE MIR 103 262 0 2140 118 7 0 chr13 52237223 52237510 -67507388 - AluSx SINE Alu -23 289 1 341 280 121 38 chr13 52239009 52239141 -67505757 - MIR SINE MIR -87 175 33 1688 200 14 27 chr13 52241301 52241671 -67503227 + MLT1A1 LTR MaLR 1 365 0 549 309 64 14 chr13 52242159 52242379 -67502519 - MIR SINE MIR -30 232 2 535 162 12 104 chr13 52242955 52243128 -67501770 - L1MEc LINE L1 -3623 2592 2436 360 169 90 0 chr13 52243152 52243241 -67501657 - L1MB2 LINE L1 -4 6167 6071 * 385 211 36 60 chr13 52243240 52243406 -67501492 - L1MEc LINE L1 -3763 2452 2291 241 241 30 45 chr13 52243823 52243956 -67500942 - L1MEc LINE L1 -4634 1762 1632 1580 226 46 20 chr13 52243969 52244429 -67500469 - L1ME3A LINE L1 -13 6157 5686 * 2293 204 24 7 chr13 52244427 52244882 -67500016 - MLT-int LTR MaLR -17 1718 1256 352 244 0 0 chr13 52244954 52245044 -67499854 - MLT-int LTR MaLR -965 770 681 1922 206 86 12 chr13 52245153 52245711 -67499187 - MLT1B-int LTR MaLR -644 727 1 1783 182 47 21 chr13 52245711 52246091 -67498807 - MLT1B LTR MaLR 0 390 1 436 267 111 28 chr13 52246097 52246449 -67498449 - L1ME3A LINE L1 -1191 4955 4575 550 265 9 18 chr13 52246573 52246796 -67498102 - L1MEc LINE L1 -4766 1630 1410 428 298 32 55 chr13 52246860 52247078 -67497820 + MLT1F1 LTR MaLR 68 280 -275 478 215 93 14 chr13 52247182 52247389 -67497509 + MLT1F1 LTR MaLR 339 595 0 2614 56 0 0 chr13 52249067 52249373 -67495525 + AluY SINE Alu 1 306 -5 2572 89 46 0 chr13 52249567 52249915 -67494983 + THE1B LTR MaLR 1 364 0 1170 207 109 8 chr13 52250042 52250339 -67494559 + AluJb SINE Alu 4 326 0 2524 154 29 2 chr13 52251105 52251521 -67493377 + MSTA LTR MaLR 2 428 0 391 333 41 14 chr13 52252189 52252336 -67492562 - MIR3 SINE MIR -4 204 54 732 148 128 20 chr13 52252450 52252599 -67492299 + FAM SINE Alu 10 174 -11 1969 144 88 0 chr13 52252855 52253230 -67491668 - L1MB2 LINE L1 -32 6139 5732 351 325 175 10 chr13 52253536 52253736 -67491162 + MIR SINE MIR 28 260 -2 323 265 15 0 chr13 52253741 52253809 -67491089 - MIR SINE MIR -58 150 82 260 282 84 0 chr13 52254019 52254090 -67490808 - L2 LINE L2 0 3313 3237 303 28 0 0 chr13 52255034 52255070 -67489828 + (GA)n Simple_repeat Simple_repeat 2 37 0 209 129 0 0 chr13 52255799 52255830 -67489068 - MIR SINE MIR -146 116 86 331 331 99 7 chr13 52257592 52257734 -67487164 + L2 LINE L2 2312 2466 -848 397 377 109 25 chr13 52257786 52258152 -67486746 + L2 LINE L2 2911 3307 -6 247 336 57 16 chr13 52258267 52258389 -67486509 + LTR16A LTR ERVL 1 127 -323 197 194 0 0 chr13 52258679 52258715 -67486183 - L2 LINE L2 -12 3260 3225 * 307 359 31 66 chr13 52258683 52258757 -67486141 - MIR SINE MIR -10 252 177 2167 117 3 0 chr13 52258757 52259055 -67485843 - AluSx SINE Alu -13 299 1 307 359 31 66 chr13 52259055 52259236 -67485662 - MIR SINE MIR -85 177 6 305 255 59 39 chr13 52259494 52259596 -67485302 + LTR67 LTR ERVL 87 190 -367 339 121 0 0 chr13 52259781 52259839 -67485059 + (CA)n Simple_repeat Simple_repeat 2 59 0 434 298 7 43 chr13 52260843 52260876 -67484022 - L3 LINE CR1 -58 1519 1486 2546 127 101 0 chr13 52260876 52261263 -67483635 + MSTB LTR MaLR 1 426 0 434 298 7 43 chr13 52261263 52261370 -67483528 - L3 LINE CR1 -91 1486 1384 264 380 30 0 chr13 52261784 52261884 -67483014 - MIR SINE MIR -140 122 20 356 261 46 39 chr13 52262009 52262139 -67482759 + MIR SINE MIR 108 238 -24 200 267 47 100 chr13 52264422 52264572 -67480326 + MIR SINE MIR 45 186 -76 619 250 164 12 chr13 52266007 52266251 -67478647 + MIR SINE MIR 1 262 0 2571 54 0 0 chr13 52267656 52267951 -67476947 - AluY SINE Alu -16 295 1 219 339 41 33 chr13 52267963 52268084 -67476814 + L2 LINE L2 3151 3272 0 435 292 33 8 chr13 52269716 52269836 -67475062 + L2 LINE L2 3186 3308 -5 917 280 64 32 chr13 52270517 52270860 -67474038 + LTR33 LTR ERVL 23 376 -145 236 200 12 82 chr13 52271038 52271123 -67473775 + L2 LINE L2 1737 1815 -1499 2457 181 27 61 chr13 52271125 52271682 -67473216 - MLT2B3 LTR ERVL 0 554 17 431 266 18 18 chr13 52271787 52271896 -67473002 - L2 LINE L2 0 3313 3205 304 292 18 35 chr13 52272185 52272263 -67472635 + L2 LINE L2 2582 2659 -655 2481 112 22 30 chr13 52272263 52272630 -67472268 + THE1B LTR MaLR 1 364 0 304 292 18 35 chr13 52272630 52272664 -67472234 + L2 LINE L2 2659 2692 -622 28 0 0 0 chr13 52275316 52275344 -67469554 + AT_rich Low_complexity Low_complexity 1 28 0 198 103 0 0 chr13 52276291 52276320 -67468578 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 921 254 85 72 chr13 52278014 52278416 -67466482 + MLT1I LTR MaLR 3 409 0 185 423 58 13 chr13 52278575 52278731 -67466167 + L2 LINE L2 2929 3091 -181 460 248 0 0 chr13 52279474 52279579 -67465319 - L1MA10 LINE L1 0 6334 6230 449 339 28 6 chr13 52279695 52279936 -67464962 - MIR3 SINE MIR -3 259 14 296 297 211 27 chr13 52282515 52282700 -67462198 + MIR SINE MIR 32 250 -12 1965 154 10 10 chr13 52282801 52283113 -67461785 + 7SLRNA srpRNA srpRNA 5 316 -4 24 0 0 0 chr13 52283118 52283142 -67461756 + AT_rich Low_complexity Low_complexity 1 24 0 188 262 0 0 chr13 52285360 52285402 -67459496 + L3 LINE CR1 1531 1572 -5 352 276 0 0 chr13 52286328 52286404 -67458494 + MIR3 SINE MIR 87 162 -46 259 236 163 41 chr13 52286584 52286707 -67458191 + MIR SINE MIR 79 216 -46 408 285 91 21 chr13 52287041 52287227 -67457671 - MIR SINE MIR -6 256 58 374 232 219 26 chr13 52287383 52287538 -67457360 + MER5A DNA MER1_type 4 188 -1 204 350 17 0 chr13 52287538 52287594 -67457304 - L3 LINE CR1 -264 1313 1257 260 298 193 6 chr13 52289480 52289641 -67455257 + MIR SINE MIR 64 254 -8 286 342 89 6 chr13 52291249 52291407 -67453491 - MER5A DNA MER1_type -11 178 8 446 261 90 22 chr13 52291439 52291617 -67453281 + MIR SINE MIR 38 231 -31 274 131 91 30 chr13 52291666 52291765 -67453133 - Charlie5 DNA MER1_type -84 2528 2424 7123 64 14 0 chr13 52291783 52292908 -67451990 - L1PA7 LINE L1 -2 6152 5047 1732 194 0 0 chr13 52293091 52293374 -67451524 - AluJb SINE Alu -27 285 3 591 245 60 0 chr13 52396312 52396463 -67348435 + MIR SINE MIR 101 260 -2 183 291 23 81 chr13 52396484 52396570 -67348328 - MIR3 SINE MIR -116 92 12 2237 85 0 14 chr13 52396813 52397131 -67347767 - AluSx SINE Alu 0 312 1 367 354 61 18 chr13 52397267 52397547 -67347351 + L2 LINE L2 973 1264 -2050 208 329 215 7 chr13 52397630 52398178 -67346720 + L2 LINE L2 2004 2665 -649 446 173 0 0 chr13 52398435 52398510 -67346388 + MER46C DNA MER2_type 80 154 -184 192 186 23 47 chr13 52398510 52398553 -67346345 + L2 LINE L2 3226 3267 -5 2327 96 7 0 chr13 52398634 52398935 -67345963 - AluSx SINE Alu -9 303 1 1643 113 0 4 chr13 52399579 52399818 -67345080 - AluSc SINE Alu 0 309 72 801 283 20 20 chr13 52399953 52400204 -67344694 - MIR SINE MIR -10 252 2 2385 64 3 3 chr13 52401055 52401353 -67343545 - AluY SINE Alu -8 303 6 203 270 325 8 chr13 52401765 52401891 -67343007 + MIR SINE MIR 79 244 -18 2375 72 3 3 chr13 52402279 52402572 -67342326 + AluY SINE Alu 1 293 -18 2395 64 7 3 chr13 52402605 52402902 -67341996 + AluSg SINE Alu 1 298 -12 2025 64 45 19 chr13 52402905 52403170 -67341728 + AluY SINE Alu 33 304 -7 654 177 209 24 chr13 52403172 52403426 -67341472 + L1MC5 LINE L1 7616 7916 -45 1069 83 117 0 chr13 52404485 52404630 -67340268 + AluY SINE Alu 1 162 -149 1613 80 0 9 chr13 52404823 52405036 -67339862 - AluY SINE Alu -100 211 1 2435 56 0 13 chr13 52405170 52405475 -67339423 - AluY SINE Alu -10 301 1 394 96 0 0 chr13 52405846 52405898 -67339000 + MER66A LTR ERV1 287 338 -140 180 0 0 0 chr13 52405908 52405928 -67338970 + (TTAAA)n Simple_repeat Simple_repeat 1 20 0 185 359 51 0 chr13 52406029 52406107 -67338791 - L2 LINE L2 -800 2514 2433 192 97 0 0 chr13 52406232 52406263 -67338635 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1152 149 0 70 chr13 52406266 52406494 -67338404 - AluSg/x SINE Alu -16 296 85 306 119 0 0 chr13 52406494 52406536 -67338362 - AluY SINE Alu -52 249 208 920 139 21 0 chr13 52406536 52406680 -67338218 - AluSq/x SINE Alu -166 147 1 29 0 0 0 chr13 52407546 52407575 -67337323 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 52408324 52408352 -67336546 + AT_rich Low_complexity Low_complexity 1 28 0 434 286 145 39 chr13 52408653 52408964 -67335934 + L2 LINE L2 2929 3272 0 641 308 62 42 chr13 52409562 52409695 -67335203 + HAL1b LINE L1 61 190 -1158 2371 85 0 3 chr13 52409695 52409989 -67334909 + AluSg SINE Alu 1 293 -17 641 308 62 42 chr13 52409989 52410407 -67334491 + HAL1b LINE L1 190 623 -725 186 320 53 0 chr13 52411004 52411079 -67333819 + L2 LINE L2 3168 3246 -67 470 286 91 0 chr13 52411108 52411262 -67333636 + MIR SINE MIR 43 210 -52 250 182 78 39 chr13 52411523 52411600 -67333298 + MER91C DNA MER1_type 38 117 -23 655 221 64 85 chr13 52411869 52412058 -67332840 + L2 LINE L2 3029 3212 -101 2391 86 0 0 chr13 52412058 52412360 -67332538 - AluY SINE Alu -9 302 1 655 221 64 85 chr13 52412360 52412451 -67332447 + L2 LINE L2 3212 3303 -10 489 333 183 31 chr13 52412529 52413559 -67331339 + L2 LINE L2 1995 3180 -92 213 298 167 9 chr13 52413791 52413905 -67330993 + MIR3 SINE MIR 41 172 -36 1452 204 40 13 chr13 52414053 52414352 -67330546 - AluJo SINE Alu -5 307 1 221 175 0 0 chr13 52414709 52414749 -67330149 + L2 LINE L2 3271 3310 -3 459 164 67 39 chr13 52415444 52415548 -67329350 + AluSg SINE Alu 2 108 -202 493 202 0 11 chr13 52416059 52416148 -67328750 - FRAM SINE Alu -17 159 72 446 120 13 0 chr13 52416230 52416305 -67328593 + (TC)n Simple_repeat Simple_repeat 1 76 0 2259 102 7 3 chr13 52416305 52416609 -67328289 - AluSc SINE Alu -4 305 1 252 246 0 15 chr13 52416654 52416719 -67328179 - HAL1 LINE L1 -367 2140 2077 867 286 71 19 chr13 52417099 52417424 -67327474 - HAL1 LINE L1 -725 1782 1441 289 256 13 13 chr13 52417434 52417512 -67327386 - L2 LINE L2 -2 3270 3193 2177 116 7 0 chr13 52417625 52417926 -67326972 - AluSx SINE Alu -9 303 1 2365 83 10 0 chr13 52419336 52419636 -67325262 - AluY SINE Alu -8 303 1 2200 110 3 3 chr13 52419797 52420105 -67324793 - AluY SINE Alu -3 308 1 1288 183 7 129 chr13 52420106 52420386 -67324512 - L1MC5 LINE L1 -985 6976 6760 2467 75 0 0 chr13 52420386 52420692 -67324206 - AluSg SINE Alu -2 308 3 1288 183 7 129 chr13 52420692 52420822 -67324076 - L1MC5 LINE L1 -1201 6760 6616 201 181 14 28 chr13 52421116 52421188 -67323710 + (TA)n Simple_repeat Simple_repeat 2 72 0 1077 168 17 0 chr13 52421204 52421383 -67323515 + Tigger1 DNA MER2_type 1 182 -2236 2127 108 0 3 chr13 52421384 52421671 -67323227 - AluSc SINE Alu -23 286 1 14309 136 35 7 chr13 52421671 52423989 -67320909 - L1M1 LINE L1 -3930 3635 1252 2258 91 0 3 chr13 52424014 52424300 -67320598 - AluSg SINE Alu -21 289 5 2473 90 3 0 chr13 52424606 52424917 -67319981 - AluSp SINE Alu -1 312 1 481 248 0 39 chr13 52425410 52425539 -67319359 - MER94 DNA DNA -1 133 10 2428 69 0 10 chr13 52426237 52426540 -67318358 - AluY SINE Alu -11 300 1 2045 145 0 3 chr13 52426777 52427074 -67317824 - AluSx SINE Alu -16 296 1 2299 99 3 7 chr13 52427085 52427387 -67317511 - AluSp SINE Alu -12 301 1 1987 174 34 9 chr13 52427616 52427943 -67316955 - MER1B DNA MER1_type 0 337 3 249 271 17 0 chr13 52427953 52428012 -67316886 + MER106A DNA MER1_type 1 60 -176 399 289 69 17 chr13 52428393 52428566 -67316332 + MER106A DNA MER1_type 1 182 -54 2219 87 0 3 chr13 52428706 52428995 -67315903 + AluSg SINE Alu 1 288 -22 813 167 0 8 chr13 52429449 52429581 -67315317 + FLAM_A SINE Alu 10 140 -2 2464 82 0 0 chr13 52430787 52431090 -67313808 + AluSc SINE Alu 1 303 -6 566 323 108 35 chr13 52431454 52431881 -67313017 + L2 LINE L2 2308 2765 -549 531 309 75 41 chr13 52431996 52432291 -67312607 + L2 LINE L2 3005 3309 -4 21 57 0 0 chr13 52432362 52432397 -67312501 + AT_rich Low_complexity Low_complexity 1 35 0 213 230 60 80 chr13 52432425 52432525 -67312373 + L2 LINE L2 2307 2404 -910 1620 186 14 14 chr13 52432678 52432973 -67311925 + AluJo SINE Alu 5 299 -13 1878 154 0 0 chr13 52433614 52433893 -67311005 - AluSg SINE Alu -31 279 1 192 152 0 0 chr13 52434158 52434191 -67310707 + A-rich Low_complexity Low_complexity 3 35 0 263 284 39 65 chr13 52535734 52535889 -67209009 + MLT1J1 LTR MaLR 18 168 -278 198 233 0 23 chr13 52536801 52536844 -67208054 - MIR3 SINE MIR -23 185 144 240 280 161 0 chr13 52539769 52539887 -67205011 - MIR SINE MIR -50 212 76 586 302 149 0 chr13 52540985 52541207 -67203691 - MIR SINE MIR 0 262 8 240 211 0 0 chr13 52541238 52541314 -67203584 + GA-rich Low_complexity Low_complexity 1 76 0 3691 221 60 57 chr13 52541386 52542608 -67202290 + MER69B DNA AcHobo 2 1226 0 427 228 118 0 chr13 52544655 52544782 -67200116 + MER69 DNA AcHobo 2382 2523 -3 323 22 0 0 chr13 52547959 52548004 -67196894 - L1P LINE L1 -3046 3100 3056 4249 19 0 0 chr13 52548004 52548490 -67196408 + L1PA3 LINE L1 5666 6151 -4 2005 170 9 3 chr13 52548891 52549233 -67195665 + MER2 DNA MER2_type 1 344 0 483 63 0 0 chr13 52550440 52550503 -67194395 + (TA)n Simple_repeat Simple_repeat 2 64 0 245 130 0 0 chr13 52550503 52550549 -67194349 - LTR66 LTR ERVL -171 439 394 186 133 0 0 chr13 52550565 52550595 -67194303 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 337 303 0 0 chr13 52550598 52550687 -67194211 + L1MC4 LINE L1 6614 6702 -1340 414 220 0 0 chr13 52550700 52550800 -67194098 + (CA)n Simple_repeat Simple_repeat 2 101 0 182 336 133 0 chr13 52551554 52551682 -67193216 + MIR SINE MIR 7 151 -111 470 276 130 60 chr13 52552215 52552599 -67192299 - L2 LINE L2 -18 3295 2885 668 309 5 5 chr13 52552754 52552977 -67191921 + L2 LINE L2 2538 2760 -554 204 261 109 11 chr13 52552954 52553046 -67191852 + MIR SINE MIR 106 206 -56 * 352 211 119 0 chr13 52553270 52553379 -67191519 + MIR SINE MIR 137 258 -4 232 391 53 0 chr13 52553675 52553808 -67191090 + L2 LINE L2 2909 3048 -224 181 366 84 0 chr13 52553919 52553990 -67190908 + L2 LINE L2 3127 3203 -69 2183 118 6 10 chr13 52555921 52556234 -67188664 + AluSx SINE Alu 1 312 0 362 181 8 134 chr13 52557381 52557416 -67187482 + MLT1I LTR MaLR 46 84 -325 2598 104 6 6 chr13 52557416 52557780 -67187118 + THE1B LTR MaLR 1 364 0 362 181 8 134 chr13 52557780 52557871 -67187027 + MLT1I LTR MaLR 84 156 -253 316 273 166 33 chr13 52557879 52558052 -67186846 + MLT1J1 LTR MaLR 232 407 -2 257 103 59 0 chr13 52559211 52559279 -67185619 + (TA)n Simple_repeat Simple_repeat 2 73 0 2512 78 0 0 chr13 52559860 52560168 -67184730 - AluY SINE Alu -3 308 1 769 357 124 30 chr13 52560955 52561758 -67183140 + L2 LINE L2 2377 3278 -35 1499 159 45 39 chr13 52562946 52563279 -67181619 + MLT2C1 LTR ERVL 1 335 -62 210 156 0 0 chr13 52563280 52563325 -67181573 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 687 239 20 65 chr13 52563348 52563549 -67181349 + MIR SINE MIR 48 239 -23 705 315 137 24 chr13 52563852 52564557 -67180341 - L2 LINE L2 -5 3308 2519 1210 233 28 15 chr13 52564712 52565038 -67179860 + LTR53 LTR ERVL 190 519 0 272 224 15 0 chr13 52565279 52565346 -67179552 - tRNA-Met-i tRNA tRNA -2 73 6 616 204 90 12 chr13 52565439 52565606 -67179292 + LTR52-int LTR ERVL 790 969 -2587 4277 207 39 21 chr13 52565684 52566723 -67178175 + LTR52-int LTR ERVL 1036 2092 -3593 5473 230 20 8 chr13 52566884 52568129 -67176769 + LTR52-int LTR ERVL 2091 3350 -2335 1662 228 65 10 chr13 52568353 52568845 -67176053 + LTR53 LTR ERVL 1 519 0 399 303 79 24 chr13 52568845 52569010 -67175888 - L2 LINE L2 -791 2523 2350 284 315 151 42 chr13 52569352 52569762 -67175136 - L2 LINE L2 -541 2773 2319 971 284 73 24 chr13 52569888 52570300 -67174598 + L2 LINE L2 2828 3259 -54 644 242 195 0 chr13 52570639 52570854 -67174044 + MIR SINE MIR 5 261 -1 539 240 79 17 chr13 52570858 52571037 -67173861 + MLT1K LTR MaLR 275 490 -125 552 293 126 75 chr13 52572023 52572460 -67172438 + L2 LINE L2 2813 3271 -1 26 30 0 0 chr13 52572758 52572791 -67172107 + AT_rich Low_complexity Low_complexity 1 33 0 388 323 19 32 chr13 52574360 52574554 -67170344 + MER5B DNA MER1_type 1 153 -25 339 25 0 0 chr13 52574474 52574514 -67170384 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 192 361 28 49 chr13 52574514 52574579 -67170319 - MER5A DNA MER1_type -110 79 14 192 284 0 83 chr13 52574661 52574794 -67170104 + MIR SINE MIR 39 183 -79 528 16 0 0 chr13 52574811 52574872 -67170026 + (CA)n Simple_repeat Simple_repeat 2 62 0 2946 174 50 84 chr13 52574873 52575627 -67169271 + MER44D DNA MER2_type 2 602 -3 976 264 33 6 chr13 52577270 52577603 -67167295 - HAL1b LINE L1 -711 637 296 450 286 109 24 chr13 52577616 52577826 -67167072 - MIR SINE MIR -26 236 9 977 203 51 18 chr13 52577999 52578216 -67166682 + MER58A DNA MER1_type 1 224 0 22 0 0 0 chr13 52578750 52578772 -67166126 + AT_rich Low_complexity Low_complexity 1 22 0 248 339 8 8 chr13 52579879 52579997 -67164901 - MER117 DNA MER1_type -79 118 1 199 360 0 0 chr13 52580181 52580256 -67164642 - L2 LINE L2 0 3313 3239 25 0 0 0 chr13 52580789 52580814 -67164084 + AT_rich Low_complexity Low_complexity 1 25 0 1066 228 19 29 chr13 52580842 52581015 -67163883 + MER2 DNA MER2_type 42 212 -133 1222 186 15 0 chr13 52581015 52581278 -67163620 - L1MA4 LINE L1 -6 6294 6028 1066 228 19 29 chr13 52581278 52581411 -67163487 + MER2 DNA MER2_type 212 345 0 313 306 16 50 chr13 52583268 52583389 -67161509 - L2 LINE L2 -10 3262 3146 194 152 0 22 chr13 52584556 52584602 -67160296 + (TA)n Simple_repeat Simple_repeat 1 45 0 220 224 0 0 chr13 52585840 52585889 -67159009 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 3003 116 9 0 chr13 52586686 52587125 -67157773 - MER1A DNA MER1_type -1 528 86 580 293 61 51 chr13 52587526 52588097 -67156801 - L1MC4 LINE L1 -26 8016 7440 300 202 119 9 chr13 52588364 52588473 -67156425 + MLT1I LTR MaLR 281 401 -8 5904 190 27 16 chr13 52588505 52590672 -67154226 - L1MB1 LINE L1 0 6168 3973 864 329 42 38 chr13 52590681 52591238 -67153660 - L1M3d LINE L1 -5380 511 1 245 296 46 0 chr13 52591365 52591473 -67153425 - L1MC4 LINE L1 -742 7300 7188 371 217 38 0 chr13 52591800 52591906 -67152992 + L1ME4a LINE L1 5748 5857 -264 24 0 0 0 chr13 52592641 52592665 -67152233 + AT_rich Low_complexity Low_complexity 1 24 0 203 162 0 27 chr13 52592679 52592716 -67152182 + CT-rich Low_complexity Low_complexity 1 36 0 447 309 29 43 chr13 52593513 52593665 -67151233 - MIR SINE MIR 0 262 112 1569 191 86 3 chr13 52593665 52594001 -67150897 - MLT1A1 LTR MaLR 0 365 2 447 309 29 43 chr13 52594001 52594058 -67150840 - MIR SINE MIR -150 112 56 1783 252 18 2 chr13 52595054 52595498 -67149400 - MER74C LTR ERVL 0 460 10 1067 207 32 0 chr13 52595896 52596113 -67148785 + MER58A DNA MER1_type 1 224 0 369 343 28 28 chr13 52597878 52598021 -67146877 - L2 LINE L2 -187 3085 2943 2177 130 39 33 chr13 52598069 52598431 -67146467 - THE1B LTR MaLR 0 364 1 1869 160 3 10 chr13 52599461 52599761 -67145137 - AluJo SINE Alu -14 298 1 6603 62 2 6 chr13 52599823 52600720 -67144178 - L1PA7 LINE L1 0 6154 5261 * 9089 90 4 0 chr13 52600718 52602051 -67142847 - L1PA7 LINE L1 -1580 4566 3229 260 53 26 0 chr13 52602937 52602975 -67141923 + (TA)n Simple_repeat Simple_repeat 1 39 0 330 316 6 17 chr13 52603181 52603355 -67141543 - L1ME3A LINE L1 -231 5939 5768 317 268 121 42 chr13 52603480 52603544 -67141354 - MLT1J2 LTR MaLR -58 392 335 1971 204 56 45 chr13 52603544 52604015 -67140883 + MLT2B1 LTR ERVL 1 480 -40 801 90 15 8 chr13 52604015 52604149 -67140749 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 1971 204 56 45 chr13 52604149 52604191 -67140707 + MLT2B1 LTR ERVL 480 520 0 317 268 121 42 chr13 52604191 52604365 -67140533 - MLT1J2 LTR MaLR -115 335 135 547 259 21 0 chr13 52604692 52604835 -67140063 + HERVL40 LTR ERVL 5377 5522 -8 1457 226 63 29 chr13 52604842 52605289 -67139609 + LTR40b LTR ERVL 1 462 0 243 297 7 65 chr13 52605305 52605443 -67139455 + MIR3 SINE MIR 79 208 0 2056 149 0 0 chr13 52605638 52605947 -67138951 - AluSx SINE Alu -3 309 1 198 235 0 0 chr13 52606791 52606825 -67138073 - L2 LINE L2 -2847 467 434 914 192 13 57 chr13 52608337 52608566 -67136332 + MER20 DNA MER1_type 1 219 0 301 300 0 69 chr13 52608697 52608827 -67136071 - MIR SINE MIR -71 191 71 204 354 0 15 chr13 52609558 52609623 -67135275 + MER5B DNA MER1_type 88 151 -27 473 260 39 0 chr13 52610158 52610285 -67134613 + Charlie8 DNA MER1_type 33 164 -2253 661 285 22 0 chr13 52610376 52610555 -67134343 + MER5A DNA MER1_type 6 188 -1 23 0 0 0 chr13 52611450 52611473 -67133425 + AT_rich Low_complexity Low_complexity 1 23 0 212 299 0 46 chr13 52611709 52611796 -67133102 - MER5A DNA MER1_type -89 100 18 313 250 46 0 chr13 52612384 52612492 -67132406 - MER103 DNA DNA -37 129 17 2485 197 117 24 chr13 52613847 52614708 -67130190 + LTR28 LTR ERV1 3 1020 0 528 244 90 26 chr13 52615256 52615412 -67129486 - MIR SINE MIR -78 184 19 2053 140 0 0 chr13 52615469 52615748 -67129150 + AluSx SINE Alu 1 279 -33 198 0 0 0 chr13 52615748 52615770 -67129128 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 6463 123 40 20 chr13 52615796 52616949 -67127949 - Tigger3b DNA MER2_type -2 1229 54 310 273 98 100 chr13 52617446 52617805 -67127093 - L1M2 LINE L1 -5840 1009 652 1345 150 65 20 chr13 52618939 52619186 -67125712 - MER1B DNA MER1_type -81 258 1 283 326 76 7 chr13 52619370 52619514 -67125384 + MIR3 SINE MIR 52 205 -3 405 0 0 0 chr13 52619802 52619847 -67125051 + (CA)n Simple_repeat Simple_repeat 1 45 0 275 305 0 73 chr13 52620526 52620690 -67124208 + MLT1K LTR MaLR 437 588 0 1751 180 10 43 chr13 52621894 52622289 -67122609 + MLT2C1 LTR ERVL 16 397 0 269 350 31 0 chr13 52622625 52622722 -67122176 - MIR3 SINE MIR -24 184 85 729 274 62 11 chr13 52622754 52623111 -67121787 - L1ME4a LINE L1 -237 5884 5510 2296 120 0 9 chr13 52623147 52623463 -67121435 + AluSq SINE Alu 1 313 0 238 241 0 0 chr13 52623671 52623725 -67121173 + (TTG)n Simple_repeat Simple_repeat 3 56 0 23 0 0 0 chr13 52624195 52624218 -67120680 + AT_rich Low_complexity Low_complexity 1 23 0 220 329 29 0 chr13 52624536 52624606 -67120292 + MIR SINE MIR 188 259 -3 2000 198 22 17 chr13 52624670 52625080 -67119818 - MLT2C2 LTR ERVL -52 412 1 242 235 37 37 chr13 52627832 52627913 -67116985 - LTR16C LTR ERVL -102 389 309 859 340 42 15 chr13 52628202 52628676 -67116222 - MLT1J LTR MaLR -20 491 5 1499 195 81 24 chr13 52628966 52629335 -67115563 - MLT1B LTR MaLR 0 390 1 357 319 140 22 chr13 52629338 52629548 -67115350 - MIR SINE MIR -1 261 20 340 105 0 0 chr13 52629548 52629605 -67115293 - L1PA6 LINE L1 0 6154 6098 357 319 140 22 chr13 52629605 52629623 -67115275 - MIR SINE MIR -242 20 6 95 39 0 0 chr13 52631212 52631342 -67113556 + AT_rich Low_complexity Low_complexity 1 130 0 252 203 34 0 chr13 52631489 52631548 -67113350 + CT-rich Low_complexity Low_complexity 3 63 0 34 0 0 0 chr13 52631583 52631617 -67113281 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr13 52631752 52631785 -67113113 + AT_rich Low_complexity Low_complexity 1 33 0 1916 115 0 0 chr13 52632701 52632954 -67111944 + AluSq SINE Alu 1 253 -60 649 220 107 0 chr13 52633739 52633898 -67111000 + MIR SINE MIR 1 176 -86 266 270 20 40 chr13 52633933 52634033 -67110865 + MIR SINE MIR 165 262 0 225 187 91 18 chr13 52634709 52634770 -67110128 - MIR SINE MIR -66 142 84 2160 136 0 0 chr13 52634802 52635112 -67109786 - AluY SINE Alu -1 310 1 5236 134 10 5 chr13 52635112 52635799 -67109099 - L1PA16 LINE L1 -3 6163 5483 2205 109 10 0 chr13 52635799 52636101 -67108797 - AluSq SINE Alu -8 305 1 5236 134 10 5 chr13 52636101 52636592 -67108306 - L1PA16 LINE L1 -683 5483 4996 528 16 0 0 chr13 52636960 52637021 -67107877 + (TTTTA)n Simple_repeat Simple_repeat 1 61 0 188 347 107 0 chr13 52637849 52637924 -67106974 + MIR3 SINE MIR 85 167 -41 2346 95 0 0 chr13 52638153 52638449 -67106449 + AluY SINE Alu 1 296 -15 309 243 0 0 chr13 52638451 52638521 -67106377 + Charlie8 DNA MER1_type 160 229 -2188 458 250 10 0 chr13 52639015 52639115 -67105783 - MER5A DNA MER1_type -80 109 9 2219 113 0 0 chr13 52639171 52639462 -67105436 - AluSq SINE Alu -21 292 2 313 246 187 8 chr13 52642473 52642607 -67102291 + MIR SINE MIR 49 206 -56 183 42 0 0 chr13 52643422 52643446 -67101452 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 331 270 0 0 chr13 52644000 52644074 -67100824 + MIR3 SINE MIR 105 178 -30 27 49 0 0 chr13 52644076 52644117 -67100781 + AT_rich Low_complexity Low_complexity 1 41 0 7896 12 0 0 chr13 52645874 52646843 -67098055 - L1PA2 LINE L1 -2 6153 5185 2143 29 0 0 chr13 52646843 52647109 -67097789 + L1PA2 LINE L1 4913 5181 -965 22 0 0 0 chr13 52647224 52647246 -67097652 + AT_rich Low_complexity Low_complexity 1 22 0 474 191 11 0 chr13 52647338 52647427 -67097471 + MER2 DNA MER2_type 10 99 -246 235 208 0 21 chr13 52647450 52647498 -67097400 + MER2 DNA MER2_type 285 331 -14 333 0 0 0 chr13 52647511 52647548 -67097350 + (CA)n Simple_repeat Simple_repeat 2 38 0 543 181 62 62 chr13 52648153 52648313 -67096585 + pTR5 LTR ERV1 743 902 -1536 453 224 56 7 chr13 52648318 52648461 -67096437 + pTR5 LTR ERV1 1049 1198 -1240 246 247 82 0 chr13 52648621 52648706 -67096192 + MIR SINE MIR 85 176 -86 1798 146 87 65 chr13 52649041 52649581 -67095317 + pTR5 LTR ERV1 34 277 -437 281 253 11 0 chr13 52649585 52649680 -67095218 + LTR30 LTR ERV1 548 643 -79 1470 88 83 0 chr13 52649680 52649897 -67095001 + LTR12 LTR ERV1 480 714 0 412 308 54 57 chr13 52650690 52651024 -67093874 - MLT1J LTR MaLR -39 472 140 189 315 0 67 chr13 52651420 52651509 -67093389 - L2 LINE L2 0 3313 3231 2093 96 4 0 chr13 52651627 52651937 -67092961 - AluSx SINE Alu 0 311 1 295 343 76 0 chr13 52652038 52652143 -67092755 - L2 LINE L2 -9 3304 3192 2324 88 0 16 chr13 52652380 52652686 -67092212 - AluY SINE Alu -10 301 1 278 374 10 10 chr13 52655124 52655223 -67089675 + L2 LINE L2 2659 2757 -557 275 244 195 0 chr13 52655286 52655368 -67089530 - MER5A DNA MER1_type -83 106 9 365 262 187 13 chr13 52655395 52655620 -67089278 + L2 LINE L2 2833 3096 -217 328 316 53 0 chr13 52655769 52655902 -67088996 - MIR SINE MIR -8 254 115 425 281 53 9 chr13 52657696 52657810 -67087088 - MER5B DNA MER1_type -27 151 33 1884 142 112 45 chr13 52658668 52658909 -67085989 - MSTA LTR MaLR 0 428 148 2258 119 0 0 chr13 52658909 52659211 -67085687 - AluSx SINE Alu -9 303 2 1884 142 112 45 chr13 52659211 52659370 -67085528 - MSTA LTR MaLR -280 148 1 3135 122 8 12 chr13 52659397 52659896 -67085002 + LOR1a LTR ERV1 1 497 0 4438 135 101 87 chr13 52660687 52662058 -67082840 - pTR5 LTR ERV1 -143 2295 276 22 0 0 0 chr13 52662770 52662792 -67082106 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 52663401 52663422 -67081476 + AT_rich Low_complexity Low_complexity 1 21 0 213 259 0 56 chr13 52663423 52663477 -67081421 - L2 LINE L2 -21 3251 3201 2063 197 50 36 chr13 52663757 52664254 -67080644 + MLT1D LTR MaLR 2 505 0 2146 114 0 0 chr13 52665181 52665486 -67079412 - AluSg1 SINE Alu 0 305 1 208 374 48 0 chr13 52665511 52665594 -67079304 + L2 LINE L2 3142 3228 -44 360 242 129 57 chr13 52665888 52665994 -67078904 - MER5A DNA MER1_type -22 167 49 2351 192 30 13 chr13 52665994 52666453 -67078445 + MLT1C LTR MaLR 1 467 0 360 242 129 57 chr13 52666453 52666470 -67078428 - MER5A DNA MER1_type -140 49 35 413 235 12 0 chr13 52666525 52666606 -67078292 + MIR SINE MIR 160 241 -21 1847 185 118 10 chr13 52666771 52667187 -67077711 - LOR1b LTR ERV1 0 461 1 653 256 14 72 chr13 52667486 52667709 -67077189 - MIR SINE MIR -34 228 19 217 214 0 0 chr13 52667759 52667801 -67077097 + (CA)n Simple_repeat Simple_repeat 1 42 0 581 267 204 55 chr13 52668405 52668444 -67076454 - L2 LINE L2 0 3313 3281 1833 163 14 7 chr13 52668444 52668739 -67076159 + AluJo SINE Alu 1 297 -15 581 267 204 55 chr13 52668739 52669207 -67075691 - L2 LINE L2 -32 3281 2709 353 294 61 103 chr13 52670523 52671111 -67073787 - L2 LINE L2 -43 3270 2696 1463 179 7 11 chr13 52671599 52671872 -67073026 + AluJb SINE Alu 41 312 0 2323 92 3 20 chr13 52672935 52673261 -67071637 - AluSx SINE Alu 0 312 1 2290 98 3 3 chr13 52673487 52673782 -67071116 - AluSc SINE Alu -14 295 1 392 318 143 49 chr13 52673832 52674300 -67070598 - L2 LINE L2 -11 3302 2771 2133 146 0 0 chr13 52674300 52674594 -67070304 - AluSx SINE Alu -18 294 1 392 318 143 49 chr13 52674594 52674664 -67070234 - L2 LINE L2 -542 2771 2709 231 36 0 0 chr13 52674664 52674692 -67070206 + (TA)n Simple_repeat Simple_repeat 1 28 0 2285 95 0 3 chr13 52674693 52674988 -67069910 - AluSg SINE Alu -16 294 1 296 242 107 13 chr13 52676878 52676992 -67067906 - MIR SINE MIR -63 145 20 1484 223 43 43 chr13 52677191 52677653 -67067245 + MLT1C LTR MaLR 6 467 0 208 346 99 0 chr13 52677894 52677975 -67066923 + MIR SINE MIR 34 122 -86 255 347 162 0 chr13 52678029 52678202 -67066696 + MIR SINE MIR 8 208 -54 223 266 16 47 chr13 52679391 52679455 -67065443 - MIR SINE MIR -130 78 17 553 93 43 14 chr13 52679478 52679618 -67065280 + (TCTA)n Simple_repeat Simple_repeat 1 144 0 253 78 0 39 chr13 52679957 52680008 -67064890 + (AAATG)n Simple_repeat Simple_repeat 2 50 0 816 226 17 52 chr13 52680322 52680552 -67064346 - MER58A DNA MER1_type -1 223 2 426 224 24 97 chr13 52684980 52685145 -67059753 + MER20 DNA MER1_type 1 153 -66 377 150 170 20 chr13 52685355 52685455 -67059443 - MER58 DNA MER1_type 0 2420 2306 208 139 0 0 chr13 52686153 52686189 -67058709 + (A)n Simple_repeat Simple_repeat 1 36 0 334 350 32 6 chr13 52686510 52686667 -67058231 + L1M4 LINE L1 4003 4163 -1983 2813 169 58 21 chr13 52686679 52687213 -67057685 - MLT2B3 LTR ERVL 0 554 1 451 302 59 105 chr13 52687280 52687892 -67057006 + L2 LINE L2 2155 2738 -576 760 249 79 9 chr13 52688013 52688258 -67056640 - MIR SINE MIR -4 258 1 22 0 0 0 chr13 52688378 52688400 -67056498 + AT_rich Low_complexity Low_complexity 1 22 0 386 255 12 23 chr13 52688643 52688841 -67056057 - L1M1 LINE L1 -318 5833 5661 301 255 153 0 chr13 52688908 52689006 -67055892 - L2 LINE L2 0 3313 3201 247 388 62 31 chr13 52689131 52689358 -67055540 + L2 LINE L2 2925 3158 -114 257 224 0 0 chr13 52690867 52690916 -67053982 + (CATA)n Simple_repeat Simple_repeat 3 51 0 737 262 93 42 chr13 52691109 52691380 -67053518 - MLT1J LTR MaLR -102 409 116 2387 68 0 3 chr13 52691380 52691673 -67053225 + AluY SINE Alu 1 292 -19 737 262 93 42 chr13 52691673 52691733 -67053165 - MLT1J LTR MaLR -395 116 61 715 285 96 22 chr13 52692773 52693024 -67051874 - MLT1J LTR MaLR -116 395 115 2351 75 0 3 chr13 52693024 52693317 -67051581 + AluY SINE Alu 1 292 -19 715 285 96 22 chr13 52693317 52693377 -67051521 - MLT1J LTR MaLR -396 115 61 1817 164 3 20 chr13 52694886 52695185 -67049713 + AluJo SINE Alu 1 294 -18 2358 141 53 12 chr13 52695758 52696169 -67048729 + MSTA LTR MaLR 1 428 0 314 169 0 46 chr13 52696266 52696331 -67048567 + L2 LINE L2 3251 3312 -1 338 263 0 90 chr13 52696490 52696646 -67048252 - L2 LINE L2 0 3313 3172 1302 254 123 41 chr13 52696673 52697054 -67047844 + MER21B LTR ERV1 17 365 -498 2332 95 0 16 chr13 52697054 52697371 -67047527 - AluSq SINE Alu -1 312 1 1302 254 123 41 chr13 52697371 52697653 -67047245 + MER21B LTR ERV1 365 735 -128 3055 149 14 60 chr13 52698028 52698554 -67046344 + MLT2B3 LTR ERVL 1 448 -72 617 48 29 19 chr13 52698554 52698657 -67046241 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 3055 149 14 60 chr13 52698657 52698725 -67046173 + MLT2B3 LTR ERVL 448 518 -2 22 0 0 0 chr13 52698927 52698949 -67045949 + AT_rich Low_complexity Low_complexity 1 22 0 449 303 191 8 chr13 52700573 52700814 -67044084 - L3b LINE CR1 -97 1486 1202 713 310 26 9 chr13 52702651 52702880 -67042018 - MIR SINE MIR -12 250 18 2145 135 3 10 chr13 52705803 52706115 -67038783 + AluY SINE Alu 1 310 -1 182 359 57 31 chr13 52706371 52706530 -67038368 + L2 LINE L2 2412 2574 -740 273 29 0 0 chr13 52706530 52706564 -67038334 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 2743 37 0 0 chr13 52707019 52707345 -67037553 + L1PA4 LINE L1 5827 6152 -3 849 166 0 0 chr13 52707518 52707663 -67037235 - Tigger5 DNA MER2_type -1 2322 2178 379 134 0 0 chr13 52707661 52707728 -67037170 + Tigger5 DNA MER2_type 2079 2145 -178 * 649 206 8 0 chr13 52707741 52707872 -67037026 - Tigger5 DNA MER2_type -2165 158 27 24 32 0 0 chr13 52707932 52707963 -67036935 + AT_rich Low_complexity Low_complexity 1 31 0 236 242 250 24 chr13 52708178 52708302 -67036596 + MIR SINE MIR 10 161 -101 25 0 0 0 chr13 52708339 52708364 -67036534 + AT_rich Low_complexity Low_complexity 1 25 0 218 146 0 36 chr13 52708594 52708649 -67036249 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 244 379 23 43 chr13 52708814 52709163 -67035735 - L2 LINE L2 -209 3063 2722 1666 199 17 0 chr13 52709272 52709574 -67035324 + AluJo SINE Alu 1 307 -5 241 228 18 0 chr13 52709656 52709713 -67035185 + GA-rich Low_complexity Low_complexity 1 58 0 180 0 0 0 chr13 52710320 52710340 -67034558 + (A)n Simple_repeat Simple_repeat 1 20 0 207 262 0 0 chr13 52710489 52710531 -67034367 - L2 LINE L2 -18 3295 3254 476 283 72 0 chr13 52710682 52710820 -67034078 - MIR SINE MIR -99 163 16 5472 84 3 7 chr13 52711084 52711870 -67033028 - L1PA11 LINE L1 0 6174 5392 241 302 60 12 chr13 52711902 52711986 -67032912 - MIR SINE MIR -61 147 64 252 239 90 30 chr13 52712625 52712759 -67032139 + HAL1b LINE L1 778 919 -429 1362 177 13 17 chr13 52712764 52713001 -67031897 + AluJo SINE Alu 49 284 -28 210 71 0 0 chr13 52713001 52713029 -67031869 + (TA)n Simple_repeat Simple_repeat 2 29 0 202 196 39 0 chr13 52713090 52713141 -67031757 + (TA)n Simple_repeat Simple_repeat 2 54 0 594 360 92 15 chr13 52713624 52714024 -67030874 + L2 LINE L2 2230 2660 -654 352 367 48 59 chr13 52714122 52714392 -67030506 + L2 LINE L2 3004 3270 -2 1593 252 42 113 chr13 52714482 52715525 -67029373 + L1ME LINE L1 142 1110 -5095 * 3264 272 58 45 chr13 52715509 52715945 -67028953 + L1ME LINE L1 1495 1924 -4291 1581 249 123 19 chr13 52715945 52716512 -67028386 - MLT1E2 LTR MaLR 0 626 1 3264 272 58 45 chr13 52716512 52717038 -67027860 + L1ME LINE L1 1924 2441 -3774 1393 212 3 12 chr13 52717038 52717363 -67027535 + L1MB7 LINE L1 5862 6183 -1 3264 272 58 45 chr13 52717363 52717633 -67027265 + L1ME LINE L1 2441 2706 -3509 444 0 29 43 chr13 52717633 52717702 -67027196 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 3264 272 58 45 chr13 52717702 52717716 -67027182 + L1ME LINE L1 2706 2718 -3497 2304 108 0 0 chr13 52717716 52718022 -67026876 + AluY SINE Alu 1 306 -5 3264 272 58 45 chr13 52718022 52718649 -67026249 + L1ME LINE L1 2718 3335 -2880 2231 133 0 0 chr13 52718649 52718958 -67025940 + AluSx SINE Alu 3 311 -1 3264 272 58 45 chr13 52718958 52719569 -67025329 + L1ME LINE L1 3335 3971 -2244 1523 205 158 2 chr13 52719576 52719976 -67024922 - MLT1D LTR MaLR -42 463 2 200 244 44 0 chr13 52720225 52720270 -67024628 + L3 LINE CR1 1428 1474 -103 890 230 148 26 chr13 52720306 52720658 -67024240 - L1MC4a LINE L1 -2 7806 7412 * 2359 252 91 19 chr13 52720653 52721114 -67023784 + L1ME LINE L1 3961 4387 -1828 2147 125 0 3 chr13 52721114 52721411 -67023487 + AluSx SINE Alu 1 296 -16 2359 252 91 19 chr13 52721411 52722054 -67022844 + L1ME LINE L1 4387 5251 -964 187 358 12 37 chr13 52722059 52722140 -67022758 - MIR SINE MIR -171 91 13 193 340 137 46 chr13 52722405 52722558 -67022340 + MIR3 SINE MIR 15 181 -27 2049 97 4 0 chr13 52723747 52724049 -67020849 - AluSg SINE Alu 0 316 14 1118 209 90 16 chr13 52725141 52725452 -67019446 - L1ME3A LINE L1 -219 5951 5618 223 277 0 46 chr13 52725664 52725729 -67019169 - L2 LINE L2 0 3272 3211 322 269 201 20 chr13 52725772 52725921 -67018977 - MIR3 SINE MIR 0 208 33 21 0 0 0 chr13 52728137 52728158 -67016740 + AT_rich Low_complexity Low_complexity 1 21 0 389 256 23 30 chr13 52728837 52728970 -67015928 + MER58C DNA MER1_type 80 211 -4 311 254 115 16 chr13 52730216 52730338 -67014560 + MER94 DNA DNA 1 134 0 668 207 41 0 chr13 52730404 52730549 -67014349 - MIR SINE MIR -33 229 79 236 342 72 26 chr13 52730569 52730762 -67014136 - MIR SINE MIR -14 248 47 371 337 29 49 chr13 52731621 52731867 -67013031 + MIR SINE MIR 16 256 -6 351 300 138 12 chr13 52731881 52732041 -67012857 + MIR SINE MIR 77 256 -6 21 0 0 0 chr13 52733451 52733472 -67011426 + AT_rich Low_complexity Low_complexity 1 21 0 336 301 165 0 chr13 52734128 52734261 -67010637 - MIR SINE MIR -1 261 107 243 208 14 42 chr13 52734894 52734966 -67009932 - MIR SINE MIR -1 261 192 221 284 111 0 chr13 52735036 52735117 -67009781 - MIR SINE MIR -78 184 95 31 44 0 0 chr13 52735454 52735499 -67009399 + AT_rich Low_complexity Low_complexity 1 45 0 1200 228 37 51 chr13 52735502 52735677 -67009221 - AluJo SINE Alu -20 292 121 420 37 0 0 chr13 52735677 52735731 -67009167 + (TG)n Simple_repeat Simple_repeat 1 54 0 1200 228 37 51 chr13 52735731 52735849 -67009049 - AluJo SINE Alu -191 121 3 279 282 150 23 chr13 52736082 52736302 -67008596 + L1MEd LINE L1 994 1241 -4878 1138 277 43 26 chr13 52736356 52736818 -67008080 + L1MC4a LINE L1 5602 6071 -1737 2148 119 0 10 chr13 52737347 52737659 -67007239 + AluSc SINE Alu 1 309 0 259 254 0 0 chr13 52738503 52738570 -67006328 + L1M4 LINE L1 5199 5265 -881 429 294 81 54 chr13 52740461 52740682 -67004216 - MIR SINE MIR -22 240 14 336 359 113 37 chr13 52741910 52742503 -67002395 + L2 LINE L2 2293 2930 -384 682 215 14 7 chr13 52742535 52742679 -67002219 + MER5A DNA MER1_type 45 189 0 252 386 28 88 chr13 52742680 52742931 -67001967 + L2 LINE L2 2985 3220 -52 792 295 49 16 chr13 52742939 52743183 -67001715 - MIR SINE MIR 0 262 11 1244 168 7 91 chr13 52743756 52744030 -67000868 + MLT1B LTR MaLR 66 316 -74 1713 171 51 21 chr13 52744064 52744398 -67000500 + MER2 DNA MER2_type 1 344 0 4480 126 26 10 chr13 52745529 52746246 -66998652 + L1PA15 LINE L1 5437 6165 0 257 360 122 48 chr13 52746286 52746639 -66998259 - L2 LINE L2 0 3272 2894 256 282 29 29 chr13 52746898 52747001 -66997897 + MIR SINE MIR 18 120 -88 515 301 49 11 chr13 52747001 52747184 -66997714 + MIR SINE MIR 25 214 -48 400 312 106 32 chr13 52747185 52747553 -66997345 + LTR16C LTR ERVL 1 490 -1 401 146 45 22 chr13 52748534 52748623 -66996275 + L1MC5 LINE L1 7352 7442 -519 219 333 14 0 chr13 52748739 52748811 -66996087 - MIR SINE MIR -26 236 164 931 226 114 68 chr13 52748812 52749216 -66995682 - MLT1H LTR MaLR -7 588 1 226 288 71 94 chr13 52749450 52749620 -66995278 + L2 LINE L2 3147 3312 -1 487 255 108 85 chr13 52750486 52750662 -66994236 + L1MC4a LINE L1 5589 5776 -2032 333 0 0 0 chr13 52750662 52750699 -66994199 + (TA)n Simple_repeat Simple_repeat 2 38 0 487 255 108 85 chr13 52750699 52750828 -66994070 + L1MC4a LINE L1 5776 5901 -1907 349 311 39 0 chr13 52751712 52751815 -66993083 - MER5B DNA MER1_type 0 178 72 770 249 55 76 chr13 52751827 52752157 -66992741 - MER77 LTR ERV1 -230 375 53 645 254 47 31 chr13 52752188 52752381 -66992517 + L1ME3A LINE L1 5967 6162 -8 226 282 0 29 chr13 52752648 52752736 -66992162 + GA-rich Low_complexity Low_complexity 1 85 0 600 261 85 94 chr13 52752851 52753203 -66991695 - LTR16A1 LTR ERVL -31 426 78 3016 158 34 16 chr13 52753567 52754119 -66990779 + L1MA8 LINE L1 5545 6106 -185 1928 101 0 36 chr13 52754121 52754399 -66990499 + AluY SINE Alu 1 268 -43 640 90 0 0 chr13 52754399 52754488 -66990410 + Alu SINE Alu 220 308 -4 1041 65 0 0 chr13 52754495 52754619 -66990279 + AluY SINE Alu 7 130 -181 5021 148 35 13 chr13 52754623 52755175 -66989723 + L1PB4 LINE L1 5219 5805 -351 414 0 0 0 chr13 52755175 52755221 -66989677 + (TA)n Simple_repeat Simple_repeat 2 47 0 5021 148 35 13 chr13 52755221 52755581 -66989317 + L1PB4 LINE L1 5805 6156 0 2048 154 0 0 chr13 52756266 52756565 -66988333 + AluSx SINE Alu 1 299 -13 2737 231 157 33 chr13 52757647 52758915 -66985983 - L1M3c LINE L1 -4676 2361 923 1187 204 78 7 chr13 52758915 52759185 -66985713 - L1M3c LINE L1 -6741 289 1 1893 221 10 10 chr13 52759212 52759610 -66985288 + MLT1A2-int LTR MaLR 260 657 -714 6071 202 15 7 chr13 52760285 52762376 -66982522 - L1PA15 LINE L1 -17 6148 4031 1539 230 0 3 chr13 52762409 52762761 -66982137 + L1P LINE L1 2343 2693 -3453 328 227 35 28 chr13 52762779 52762916 -66981982 + MLT1A2-int LTR MaLR 653 881 -490 1110 192 11 72 chr13 52762972 52763248 -66981650 + MLT1A2-int LTR MaLR 1476 1734 -1 952 224 144 44 chr13 52763249 52763589 -66981309 + MLT1A2 LTR MaLR 1 374 0 515 287 66 0 chr13 52764954 52765121 -66979777 + MER5B DNA MER1_type 1 178 0 384 307 136 40 chr13 52765327 52765555 -66979343 - MIR SINE MIR 0 262 13 2280 107 0 0 chr13 52765694 52766004 -66978894 - AluSg SINE Alu 0 310 1 2553 107 33 3 chr13 52766033 52766396 -66978502 + THE1C LTR MaLR 1 374 -1 1974 170 33 0 chr13 52766696 52767031 -66977867 + MER7A DNA MER2_type 1 344 -2 2165 90 0 10 chr13 52767623 52767922 -66976976 + AluY SINE Alu 1 296 -15 735 294 11 6 chr13 52770176 52770356 -66974542 - MIR3 SINE MIR -8 200 20 261 75 0 0 chr13 52771489 52771529 -66973369 + (TC)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr13 52771529 52771563 -66973335 + (TG)n Simple_repeat Simple_repeat 1 34 0 812 271 119 28 chr13 52771701 52772339 -66972559 + HsTC2a DNA Tc2 2 739 -3 314 339 41 0 chr13 52772353 52772474 -66972424 - MIR3 SINE MIR -2 206 81 2881 9 0 0 chr13 52772617 52772934 -66971964 + AluYb8 SINE Alu 1 317 -1 2156 263 31 35 chr13 52773615 52774388 -66970510 - L1ME1 LINE L1 -5 6161 5392 776 236 64 14 chr13 52774388 52774608 -66970290 + MER96B DNA MER1_type? 5 235 -182 4473 248 103 73 chr13 52774608 52775703 -66969195 - L1ME1 LINE L1 -745 5401 4340 2092 126 7 0 chr13 52775703 52775997 -66968901 + AluSq SINE Alu 1 296 -17 4473 248 103 73 chr13 52775997 52776350 -66968548 - L1ME1 LINE L1 -1806 4340 3999 1487 61 0 5 chr13 52776350 52776547 -66968351 - L1PA4 LINE L1 -3 6152 5957 4473 248 103 73 chr13 52776547 52776712 -66968186 - L1ME1 LINE L1 -2147 3999 3840 1555 162 92 94 chr13 52776712 52777168 -66967730 + MSTB2 LTR MaLR 3 457 0 4473 248 103 73 chr13 52777168 52778359 -66966539 - L1ME1 LINE L1 -2306 3840 2511 269 151 19 19 chr13 52778480 52778533 -66966365 - MLT1J1 LTR MaLR -323 123 71 211 259 0 19 chr13 52778976 52779030 -66965868 + L3 LINE CR1 1237 1289 -288 22 0 0 0 chr13 52779109 52779131 -66965767 + AT_rich Low_complexity Low_complexity 1 22 0 300 158 0 0 chr13 52779158 52779215 -66965683 + (TG)n Simple_repeat Simple_repeat 2 58 0 261 0 0 0 chr13 52786879 52786908 -66957990 + (TA)n Simple_repeat Simple_repeat 1 29 0 246 62 0 0 chr13 52787773 52787805 -66957093 + (CA)n Simple_repeat Simple_repeat 1 32 0 376 196 216 0 chr13 52788430 52788532 -66956366 - MIR SINE MIR -66 196 73 615 240 49 101 chr13 52789064 52789331 -66955567 + L3b LINE CR1 1190 1442 -141 735 222 98 10 chr13 52792191 52792394 -66952504 - MER58A DNA MER1_type -1 223 3 2483 118 3 8 chr13 52793496 52793862 -66951036 - THE1B LTR MaLR 0 364 1 281 302 48 24 chr13 52794095 52794221 -66950677 + MIR SINE MIR 63 191 -71 438 298 101 55 chr13 52794228 52794554 -66950344 - MLT1L LTR MaLR -228 387 47 234 238 60 48 chr13 52794569 52794653 -66950245 + MIR SINE MIR 166 250 -12 1109 255 164 34 chr13 52794829 52795319 -66949579 - L1ME3A LINE L1 -9 6161 5736 2340 96 0 10 chr13 52795319 52795631 -66949267 + AluSc SINE Alu 1 309 0 1109 255 164 34 chr13 52795631 52796150 -66948748 - L1ME3A LINE L1 -434 5736 5016 6008 139 14 1 chr13 52796305 52797492 -66947406 - L1PB1 LINE L1 -1 6150 4949 210 239 0 0 chr13 52797652 52797723 -66947175 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 282 143 0 0 chr13 52798485 52798534 -66946364 + (TG)n Simple_repeat Simple_repeat 2 50 0 210 248 98 68 chr13 52798942 52799075 -66945823 - MIR SINE MIR -44 218 82 281 270 35 26 chr13 52799952 52800018 -66944880 + L1ME LINE L1 5748 5817 -347 3760 63 2 8 chr13 52800018 52800522 -66944376 + L1PA8 LINE L1 5671 6171 -1 281 270 35 26 chr13 52800522 52800570 -66944328 + L1ME LINE L1 5817 5863 -301 201 328 22 89 chr13 52800916 52801096 -66943802 + MIR3 SINE MIR 20 187 -21 22 0 0 0 chr13 52801176 52801198 -66943700 + AT_rich Low_complexity Low_complexity 1 22 0 1923 153 0 25 chr13 52802056 52802376 -66942522 - AluSx SINE Alu 0 312 1 1126 21 0 0 chr13 52802448 52802591 -66942307 + L1P2 LINE L1 5289 5431 -724 324 276 70 124 chr13 52802704 52803091 -66941807 + L1MEd LINE L1 3 368 -5751 403 309 106 57 chr13 52803128 52803410 -66941488 + L1MEd LINE L1 455 750 -5369 197 197 16 0 chr13 52804734 52804795 -66940103 + GA-rich Low_complexity Low_complexity 1 62 0 481 324 51 57 chr13 52805227 52805435 -66939463 + MER102a DNA MER1_type 1 208 -1209 2502 50 0 0 chr13 52805435 52805733 -66939165 - AluY SINE Alu -13 298 1 481 324 51 57 chr13 52805733 52805820 -66939078 + MER102a DNA MER1_type 208 294 -36 193 261 20 181 chr13 52805840 52806039 -66938859 - MER5B DNA MER1_type -11 167 1 5256 89 61 6 chr13 52806527 52807310 -66937588 + LTR12 LTR ERV1 1 826 0 284 370 25 8 chr13 52807833 52807952 -66936946 - MIR SINE MIR -110 152 32 342 0 0 0 chr13 52807953 52807991 -66936907 + (TG)n Simple_repeat Simple_repeat 1 38 0 181 122 98 24 chr13 52808238 52808279 -66936619 + MIR SINE MIR 206 249 -13 23 0 0 0 chr13 52808529 52808552 -66936346 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 52809413 52809441 -66935457 + AT_rich Low_complexity Low_complexity 1 28 0 380 250 109 26 chr13 52809625 52809781 -66935117 - MIR SINE MIR -8 254 86 19278 27 2 1 chr13 52809874 52812202 -66932696 - L1PA3 LINE L1 -1289 4857 2527 7661 25 1 0 chr13 52812202 52813504 -66931394 + L1PA3 LINE L1 4854 6152 -3 185 281 47 31 chr13 52813846 52813910 -66930988 - MIR SINE MIR -4 258 194 266 284 54 0 chr13 52813916 52813990 -66930908 + MIR SINE MIR 184 261 -1 228 362 101 7 chr13 52814011 52814160 -66930738 - MIR SINE MIR -65 197 35 1555 204 0 0 chr13 52814921 52815205 -66929693 + AluJo SINE Alu 13 296 -16 205 267 17 0 chr13 52815553 52815613 -66929285 + (TTCA)n Simple_repeat Simple_repeat 3 63 0 1194 203 94 26 chr13 52817126 52817392 -66927506 - AluJb SINE Alu -18 284 1 1301 200 31 78 chr13 52817429 52817814 -66927084 + MLT2D LTR ERVL 1 367 -47 1930 231 108 17 chr13 52817918 52818438 -66926460 + MLT1F1 LTR MaLR 1 567 0 312 301 41 16 chr13 52819432 52819555 -66925343 - MER94 DNA DNA 0 134 9 304 249 31 204 chr13 52819578 52819867 -66925031 + MIR SINE MIR 3 241 -21 * 355 313 60 0 chr13 52819843 52820009 -66924889 - MIR SINE MIR -20 242 67 248 256 184 16 chr13 52820994 52821119 -66923779 + MIR SINE MIR 99 244 -18 199 275 145 58 chr13 52823413 52823551 -66921347 + L2 LINE L2 3164 3313 0 263 250 60 50 chr13 52823623 52823723 -66921175 - MIR SINE MIR 0 262 162 201 310 103 17 chr13 52823721 52823837 -66921061 + MIR SINE MIR 29 154 -108 * 2441 76 0 0 chr13 52824735 52825037 -66919861 + AluY SINE Alu 1 302 -9 1932 256 50 8 chr13 52825208 52825704 -66919194 - LTR40a LTR ERVL -2 517 1 189 0 0 0 chr13 52826165 52826186 -66918712 + (A)n Simple_repeat Simple_repeat 1 21 0 1440 138 149 68 chr13 52826868 52827237 -66917661 + MER57A LTR ERV1 5 403 0 1791 181 7 0 chr13 52827296 52827595 -66917303 - AluJb SINE Alu -11 301 1 357 268 152 49 chr13 52828549 52828713 -66916185 - MER5A DNA MER1_type 0 189 9 479 260 75 58 chr13 52828737 52829029 -66915869 - L1M4 LINE L1 -1287 4859 4563 963 247 97 22 chr13 52829031 52829620 -66915278 - L1ME LINE L1 -713 5449 4821 3488 243 66 35 chr13 52829636 52831876 -66913022 + L1ME1 LINE L1 3821 6135 -31 463 217 57 19 chr13 52831753 52831910 -66912988 + L1MA10 LINE L1 6172 6334 0 * 6450 29 1 0 chr13 52832096 52832864 -66912034 - L1PA5 LINE L1 -1748 4398 3630 7630 57 0 0 chr13 52832864 52834618 -66910280 + L1PA5 LINE L1 4396 6153 -1 191 247 156 26 chr13 52835149 52835226 -66909672 - MIR SINE MIR 0 262 176 860 282 75 34 chr13 52836958 52837436 -66907462 + Charlie7 DNA MER1_type 55 552 -2060 1212 271 139 12 chr13 52837482 52837696 -66907202 + Charlie7 DNA MER1_type 729 915 -1697 1460 179 120 7 chr13 52837696 52838004 -66906894 - MER2 DNA MER2_type 0 344 2 1212 271 139 12 chr13 52838004 52838365 -66906533 + Charlie7 DNA MER1_type 915 1377 -1235 480 235 102 32 chr13 52838493 52838521 -66906377 - MIR SINE MIR -34 228 203 2389 77 0 0 chr13 52838521 52838818 -66906080 - AluY SINE Alu -9 302 6 480 235 102 32 chr13 52838818 52838976 -66905922 - MIR SINE MIR -59 203 29 435 217 0 47 chr13 52839002 52839108 -66905790 + Charlie7 DNA MER1_type 2182 2282 -330 27 29 0 0 chr13 52839857 52839891 -66905007 + AT_rich Low_complexity Low_complexity 1 34 0 5717 103 26 20 chr13 52841987 52842814 -66902084 - L1PA13 LINE L1 0 6163 5328 2389 88 0 0 chr13 52842814 52843108 -66901790 - AluSc SINE Alu -15 294 1 5717 103 26 20 chr13 52843108 52843184 -66901714 - L1PA13 LINE L1 -835 5328 5254 1331 195 8 22 chr13 52843579 52843846 -66901052 + AluJo SINE Alu 50 312 0 186 71 0 0 chr13 52843858 52843886 -66901012 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1497 165 24 31 chr13 52844360 52844651 -66900247 - AluJb SINE Alu -20 292 4 1554 242 117 26 chr13 52844669 52845181 -66899717 - MLT1F1 LTR MaLR 0 567 1 1086 266 95 38 chr13 52845973 52846500 -66898398 - MER34B LTR ERV1 0 565 9 22 0 0 0 chr13 52846546 52846568 -66898330 + AT_rich Low_complexity Low_complexity 1 22 0 353 378 46 0 chr13 52849763 52849980 -66894918 + L2 LINE L2 2296 2522 -792 246 136 0 0 chr13 52850094 52850138 -66894760 + (TG)n Simple_repeat Simple_repeat 1 44 0 1417 148 21 4 chr13 52850139 52850376 -66894522 - MLT2C1 LTR ERVL -156 241 1 1365 282 69 22 chr13 52851763 52852292 -66892606 + MLT1F1 LTR MaLR 1 555 -12 23 54 0 0 chr13 52852625 52852662 -66892236 + AT_rich Low_complexity Low_complexity 1 37 0 540 281 157 0 chr13 52852884 52853069 -66891829 - MIR SINE MIR 0 262 49 23 0 0 0 chr13 52853400 52853423 -66891475 + AT_rich Low_complexity Low_complexity 1 23 0 201 296 200 9 chr13 52853645 52853760 -66891138 + MIR SINE MIR 82 218 -44 825 177 151 10 chr13 52854084 52854276 -66890622 + MER20 DNA MER1_type 1 219 0 1362 208 88 48 chr13 52855066 52855511 -66889387 + LTR56 LTR ERV1 4 437 0 473 169 12 0 chr13 52858685 52858768 -66886130 + AluJ/FLAM SINE Alu 1 84 -228 602 328 62 4 chr13 52858840 52859081 -66885817 - MIR SINE MIR 0 262 8 198 0 0 0 chr13 52859411 52859433 -66885465 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 322 241 9 54 chr13 52859515 52859627 -66885271 - MIR SINE MIR -96 166 60 389 290 80 45 chr13 52860045 52860245 -66884653 + MIR SINE MIR 54 260 -2 589 359 103 34 chr13 52860314 52861206 -66883692 + L2 LINE L2 2282 3272 0 24 0 0 0 chr13 52861311 52861335 -66883563 + AT_rich Low_complexity Low_complexity 1 24 0 2275 258 33 37 chr13 52861339 52862595 -66882303 - L1ME1 LINE L1 -47 6119 4875 314 217 14 0 chr13 52862617 52862686 -66882212 - L1ME1 LINE L1 -2302 3844 3775 557 158 16 31 chr13 52862712 52862839 -66882059 - AluJb SINE Alu -187 125 1 240 288 0 0 chr13 52862878 52862951 -66881947 - L1ME LINE L1 -461 5660 5588 2048 131 0 3 chr13 52863262 52863568 -66881330 - AluY SINE Alu -6 305 1 24 32 0 0 chr13 52863972 52864003 -66880895 + AT_rich Low_complexity Low_complexity 1 31 0 1293 249 94 5 chr13 52864825 52865206 -66879692 + LTR52 LTR ERVL 6 420 -1 703 335 58 4 chr13 52865473 52865715 -66879183 - MIR SINE MIR -4 258 4 29 28 0 0 chr13 52866380 52866416 -66878482 + AT_rich Low_complexity Low_complexity 1 36 0 1788 123 3 0 chr13 52867232 52867516 -66877382 + L1MA4 LINE L1 6015 6299 -1 398 125 50 12 chr13 52867604 52867764 -66877134 + (TA)n Simple_repeat Simple_repeat 1 166 0 202 372 139 0 chr13 52868000 52868086 -66876812 - L2 LINE L2 -19 3253 3156 6626 133 52 27 chr13 52868486 52869686 -66875212 - Tigger3b DNA MER2_type 0 1231 1 304 289 21 37 chr13 52869802 52869937 -66874961 + L1ME3A LINE L1 2852 2985 -3161 732 92 25 0 chr13 52869937 52870056 -66874842 + L1MA5 LINE L1 6178 6299 -1 304 289 21 37 chr13 52870056 52870107 -66874791 + L1ME3A LINE L1 2985 3035 -3111 466 310 76 35 chr13 52870371 52870974 -66873924 + L1ME3A LINE L1 3364 3991 -2155 407 312 93 34 chr13 52871064 52871301 -66873597 + MIR SINE MIR 1 251 -11 435 281 168 27 chr13 52871344 52871531 -66873367 + L1ME3A LINE L1 4067 4226 -1920 2204 100 17 3 chr13 52871531 52871830 -66873068 + AluSg SINE Alu 1 303 -7 435 281 168 27 chr13 52871830 52872048 -66872850 + L1ME3A LINE L1 4226 4529 -1617 366 314 151 6 chr13 52872068 52872393 -66872505 + L1ME3A LINE L1 4493 4864 -1282 399 276 70 27 chr13 52872504 52872689 -66872209 + L1MC/D LINE L1 5192 5384 -762 2123 82 39 0 chr13 52872693 52872973 -66871925 + AluY SINE Alu 1 291 -20 23 0 0 0 chr13 52872974 52872997 -66871901 + AT_rich Low_complexity Low_complexity 1 23 0 248 302 35 9 chr13 52873026 52873142 -66871756 + L1MC/D LINE L1 5406 5524 -2284 23 68 0 0 chr13 52873254 52873298 -66871600 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr13 52873502 52873524 -66871374 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 52873635 52873665 -66871233 + AT_rich Low_complexity Low_complexity 1 30 0 184 77 51 0 chr13 52875317 52875356 -66869542 + (TTATA)n Simple_repeat Simple_repeat 4 44 0 2040 114 0 0 chr13 52875360 52875633 -66869265 - AluSg SINE Alu -37 273 1 1587 173 58 28 chr13 52875698 52876062 -66868836 + THE1C LTR MaLR 1 375 0 5081 152 1 57 chr13 52876064 52876989 -66867909 + THE1C-int LTR MaLR 3 875 -705 * 10946 180 34 16 chr13 52876988 52879225 -66865673 - L1P LINE L1 -2126 4020 1744 22 80 0 0 chr13 52879734 52879784 -66865114 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr13 52880317 52880348 -66864550 + AT_rich Low_complexity Low_complexity 1 31 0 248 250 103 9 chr13 52880428 52880544 -66864354 - L1MC4 LINE L1 0 8042 7916 254 316 0 0 chr13 52880555 52880634 -66864264 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 333 225 65 35 chr13 52880662 52880832 -66864066 - L1MC4 LINE L1 -158 7884 7600 223 288 0 25 chr13 52881672 52881752 -66863146 + (CAATA)n Simple_repeat Simple_repeat 3 80 0 1814 269 81 30 chr13 52882800 52883308 -66861590 + L1ME3A LINE L1 4864 5344 -826 2439 74 0 0 chr13 52883308 52883606 -66861292 - AluSc SINE Alu -11 298 1 1814 269 81 30 chr13 52883606 52884316 -66860582 + L1ME3A LINE L1 5344 6144 -26 377 340 19 12 chr13 52885088 52885250 -66859648 + MIR3 SINE MIR 45 207 -1 22 56 0 0 chr13 52886772 52886808 -66858090 + AT_rich Low_complexity Low_complexity 1 36 0 328 272 12 41 chr13 52889165 52889334 -66855564 + L1M4 LINE L1 1300 1533 -5079 26 0 0 0 chr13 52889364 52889390 -66855508 + AT_rich Low_complexity Low_complexity 1 26 0 477 209 111 45 chr13 52889424 52889601 -66855297 - L1M LINE L1 -743 5403 5221 7741 198 46 40 chr13 52889703 52889862 -66855036 - L1 LINE L1 -2096 4232 4075 407 21 0 0 chr13 52889862 52889910 -66854988 - tRNA-Gln-CAG tRNA tRNA -27 48 1 7741 198 46 40 chr13 52889910 52893112 -66851786 - L1 LINE L1 -2253 4075 802 2197 91 14 0 chr13 52893112 52893397 -66851501 + AluSx SINE Alu 1 289 -23 7741 198 46 40 chr13 52893397 52894199 -66850699 - L1 LINE L1 -5526 802 6 964 290 41 52 chr13 52894269 52894752 -66850146 + MLT2B1 LTR ERVL 1 478 -42 183 129 0 0 chr13 52894752 52894783 -66850115 + (CCTA)n Simple_repeat Simple_repeat 1 31 0 205 308 89 48 chr13 52895884 52896030 -66848868 + L2 LINE L2 3158 3309 -4 489 239 93 58 chr13 52896030 52896174 -66848724 - LTR37A LTR ERV1 0 426 289 306 0 0 0 chr13 52896174 52896208 -66848690 + (TG)n Simple_repeat Simple_repeat 2 35 0 489 239 93 58 chr13 52896208 52896513 -66848385 - LTR37A LTR ERV1 -137 289 8 295 301 0 12 chr13 52897024 52897107 -66847791 - MIR3 SINE MIR -13 195 114 1398 181 73 16 chr13 52897599 52897914 -66846984 - L1MA3 LINE L1 -3 6302 5970 187 292 0 0 chr13 52898769 52898817 -66846081 + MER5B DNA MER1_type 50 97 -81 181 382 45 27 chr13 52900504 52900614 -66844284 - L2 LINE L2 0 3313 3202 1344 265 35 53 chr13 52900629 52900789 -66844109 + LTR16A LTR ERVL 16 177 -273 2348 139 42 40 chr13 52900789 52901214 -66843684 - MSTB LTR MaLR 0 426 1 1344 265 35 53 chr13 52901214 52901483 -66843415 + LTR16A LTR ERVL 177 437 -13 266 352 89 45 chr13 52901587 52902058 -66842840 - L2 LINE L2 -187 3085 2599 623 241 54 25 chr13 52903653 52903856 -66841042 + MIR SINE MIR 44 252 -10 268 335 43 43 chr13 52904543 52904728 -66840170 - MIR3 SINE MIR -11 197 13 195 311 0 0 chr13 52904930 52904975 -66839923 - MIR SINE MIR -135 73 29 274 288 77 17 chr13 52905048 52905178 -66839720 - MLT1J1 LTR MaLR -37 413 278 397 320 87 12 chr13 52905202 52905374 -66839524 - MLT1J2 LTR MaLR -245 205 21 2112 107 7 13 chr13 52905590 52905899 -66838999 + AluSx SINE Alu 1 307 -5 26 0 0 0 chr13 52906108 52906134 -66838764 + AT_rich Low_complexity Low_complexity 1 26 0 1495 178 44 24 chr13 52906325 52906618 -66838280 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr13 52907987 52908008 -66836890 + AT_rich Low_complexity Low_complexity 1 21 0 1521 266 97 58 chr13 52908102 52908806 -66836092 + MER21B LTR ERV1 4 734 -129 341 339 47 47 chr13 52909116 52909438 -66835460 + L1ME3A LINE L1 66 387 -5732 2257 170 26 19 chr13 52910045 52910441 -66834457 + MSTB LTR MaLR 1 402 -24 2198 143 80 5 chr13 52910441 52910839 -66834059 - MSTA LTR MaLR 0 428 1 2257 170 26 19 chr13 52910839 52910860 -66834038 + MSTB LTR MaLR 402 421 -5 377 348 63 52 chr13 52910895 52911277 -66833621 + L1ME3A LINE L1 379 764 -5355 393 333 42 66 chr13 52911380 52911759 -66833139 + L1MB2 LINE L1 265 634 -5497 475 236 2 46 chr13 52912163 52912346 -66832552 + L1MB2 LINE L1 907 1078 -5053 387 109 0 0 chr13 52912347 52912411 -66832487 - MER73 LTR ERVL -580 64 1 2129 183 52 35 chr13 52912411 52912663 -66832235 + L1MB2 LINE L1 4157 4403 -1807 13630 153 19 10 chr13 52912663 52915060 -66829838 + Tigger1 DNA MER2_type 1 2418 0 2129 183 52 35 chr13 52915060 52915544 -66829354 + L1MB2 LINE L1 4403 4899 -1311 1695 153 72 28 chr13 52915561 52915920 -66828978 + THE1C LTR MaLR 1 375 0 9753 129 7 39 chr13 52915922 52917544 -66827354 + THE1C-int LTR MaLR 3 1573 -7 1481 163 72 39 chr13 52917546 52917909 -66826989 + THE1C LTR MaLR 1 375 0 1699 223 27 5 chr13 52917919 52918332 -66826566 + L1MB2 LINE L1 4919 5340 -870 1140 178 62 36 chr13 52918488 52918764 -66826134 - THE1C LTR MaLR -92 283 1 2143 193 29 2 chr13 52918768 52919219 -66825679 + L1MB2 LINE L1 5772 6234 -1 542 253 96 9 chr13 52919307 52919536 -66825362 + L1ME3A LINE L1 896 1144 -4975 350 322 42 72 chr13 52919540 52919872 -66825026 + L1ME3A LINE L1 1029 1350 -4781 480 257 101 27 chr13 52920007 52920264 -66824634 + L1ME3A LINE L1 5237 5512 -641 319 189 147 32 chr13 52920264 52920359 -66824539 + LTR37A LTR ERV1 1 106 -320 589 152 51 14 chr13 52920456 52920594 -66824304 + LTR37A LTR ERV1 282 424 -2 1150 250 151 33 chr13 52920594 52921163 -66823735 + L1ME3A LINE L1 5509 6144 -9 182 168 122 84 chr13 52922573 52922680 -66822218 + MER5C DNA MER1_type 10 120 -204 278 273 81 20 chr13 52922720 52922819 -66822079 + L2 LINE L2 3209 3313 0 226 244 96 67 chr13 52922932 52923067 -66821831 - L1ME4a LINE L1 -6 6115 5977 291 282 68 19 chr13 52923276 52923379 -66821519 - MIR SINE MIR -79 183 76 233 241 149 0 chr13 52924685 52924772 -66820126 + MIR SINE MIR 90 189 -73 1139 134 50 34 chr13 52927974 52928213 -66816685 - L1MA9 LINE L1 0 6312 6070 394 236 173 17 chr13 52928265 52928429 -66816469 + MER5A DNA MER1_type 1 177 -1 695 264 62 0 chr13 52928437 52928615 -66816283 + MER5A DNA MER1_type 1 189 0 248 253 13 0 chr13 52928802 52928881 -66816017 + (TA)n Simple_repeat Simple_repeat 2 81 0 214 306 12 24 chr13 52928914 52928999 -66815899 - MIR3 SINE MIR -43 165 82 27 49 0 0 chr13 52929259 52929300 -66815598 + AT_rich Low_complexity Low_complexity 1 41 0 1309 203 185 10 chr13 52930555 52930944 -66813954 + MSTB2 LTR MaLR 1 457 0 21 71 0 0 chr13 52932031 52932073 -66812825 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr13 52932384 52932408 -66812490 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 52933373 52933397 -66811501 + AT_rich Low_complexity Low_complexity 1 24 0 635 261 6 19 chr13 52933939 52934085 -66810813 + FRAM SINE Alu 1 146 -156 180 0 0 0 chr13 52934085 52934105 -66810793 + (TTG)n Simple_repeat Simple_repeat 2 21 0 249 324 98 0 chr13 52936875 52936977 -66807921 - MIR SINE MIR 0 262 151 965 161 0 7 chr13 52937579 52937734 -66807164 + AluSg SINE Alu 3 156 -154 254 284 74 0 chr13 52938138 52938219 -66806679 - MIR SINE MIR -114 148 62 3453 256 54 39 chr13 52938340 52939741 -66805157 + L1M4c LINE L1 1167 2171 -4516 1332 128 55 206 chr13 52939870 52940373 -66804525 - Tigger2a DNA MER2_type -25 409 1 363 246 56 28 chr13 52940439 52940618 -66804280 + L1M4c LINE L1 2435 2618 -4116 1728 168 3 13 chr13 52940968 52941266 -66803632 - AluSx SINE Alu -17 295 1 697 253 25 8 chr13 52941395 52941703 -66803195 + L1M4c LINE L1 2608 2918 -3814 26 0 0 0 chr13 52943411 52943437 -66801461 + AT_rich Low_complexity Low_complexity 1 26 0 765 209 28 0 chr13 52943508 52943690 -66801208 + MER53 DNA DNA 3 189 0 454 322 33 16 chr13 52943694 52943877 -66801021 - MIR SINE MIR -61 201 16 928 245 0 11 chr13 52944212 52944400 -66800498 - MER5A DNA MER1_type -3 186 1 2388 150 104 17 chr13 52946638 52946992 -66797906 - MER6 DNA MER2_type -13 852 444 2116 138 33 25 chr13 52946992 52947353 -66797545 - THE1B LTR MaLR 0 364 1 2388 150 104 17 chr13 52947353 52947479 -66797419 - MER6 DNA MER2_type -421 444 330 266 324 14 0 chr13 52997956 52998030 -66746868 + MIR SINE MIR 19 93 -115 202 364 173 0 chr13 52998059 52998169 -66746729 - L2 LINE L2 -3 3269 3141 214 337 66 22 chr13 52998627 52998808 -66746090 - L2 LINE L2 -676 2638 2450 1344 154 9 0 chr13 52999110 52999324 -66745574 + L1PB4 LINE L1 5940 6155 -1 246 62 0 0 chr13 53000315 53000347 -66744551 + (TG)n Simple_repeat Simple_repeat 2 33 0 2585 124 41 2 chr13 53003680 53004092 -66740806 - MSTA LTR MaLR 0 428 1 2302 96 0 34 chr13 53004811 53005134 -66739764 + AluSx SINE Alu 1 312 0 361 343 123 9 chr13 53005205 53005424 -66739474 - L3 LINE CR1 -46 1531 1288 968 228 105 46 chr13 53005446 53005770 -66739128 + MER2 DNA MER2_type 1 343 -2 493 114 53 92 chr13 53005853 53005984 -66738914 - L1MA4 LINE L1 -1 6299 6174 21 57 0 0 chr13 53007712 53007747 -66737151 + AT_rich Low_complexity Low_complexity 1 35 0 294 214 214 10 chr13 53008582 53008680 -66736218 + L2 LINE L2 3192 3309 -4 231 99 49 25 chr13 53008818 53008899 -66735999 + (TA)n Simple_repeat Simple_repeat 2 84 0 3944 181 49 24 chr13 53008903 53009803 -66735095 - L1MA9 LINE L1 0 6312 5391 348 301 151 24 chr13 53009804 53009970 -66734928 - MIR SINE MIR -64 198 12 231 353 43 9 chr13 53009989 53010105 -66734793 - 5S rRNA rRNA -1 120 1 311 265 77 17 chr13 53011901 53012018 -66732880 - MIR3 SINE MIR -31 177 54 302 259 197 20 chr13 53012035 53012182 -66732716 - MIR SINE MIR -32 230 58 406 309 113 40 chr13 53012917 53013134 -66731764 - L2 LINE L2 -2 3311 3057 1814 168 45 6 chr13 53013134 53013468 -66731430 + MER7A DNA MER2_type 1 345 -1 406 309 113 40 chr13 53013468 53013603 -66731295 - L2 LINE L2 -256 3057 2933 222 298 85 78 chr13 53013721 53013979 -66730919 - L2 LINE L2 -658 2656 2397 426 277 45 68 chr13 53015364 53015533 -66729365 + MIR SINE MIR 2 166 -96 2423 125 5 14 chr13 53015533 53015900 -66728998 - THE1B LTR MaLR 0 364 1 426 277 45 68 chr13 53015900 53015950 -66728948 + MIR SINE MIR 166 216 -46 558 274 97 21 chr13 53016051 53016237 -66728661 - MIR SINE MIR -2 260 61 22 35 0 0 chr13 53017663 53017692 -66727206 + AT_rich Low_complexity Low_complexity 1 29 0 675 283 91 50 chr13 53017829 53018387 -66726511 - MLT1G1 LTR MaLR 0 549 1 2239 94 3 7 chr13 53018429 53018727 -66726171 + AluSx SINE Alu 14 310 -2 548 313 88 9 chr13 53020395 53020622 -66724276 - MIR SINE MIR -16 246 2 2089 119 32 40 chr13 53021475 53021853 -66723045 - THE1C LTR MaLR 0 375 1 296 285 45 84 chr13 53021978 53022157 -66722741 - L2 LINE L2 -546 2768 2597 447 190 35 60 chr13 53024204 53024320 -66720578 + L2 LINE L2 3196 3308 -5 200 348 71 9 chr13 53025030 53025142 -66719756 - MIR SINE MIR -142 120 2 206 247 14 55 chr13 53029350 53029423 -66715475 - MIR SINE MIR -26 236 167 201 211 0 0 chr13 53030686 53030738 -66714160 + (TA)n Simple_repeat Simple_repeat 1 52 0 21 57 0 0 chr13 53030966 53031001 -66713897 + AT_rich Low_complexity Low_complexity 1 35 0 2260 98 0 0 chr13 53032081 53032377 -66712521 - AluSg SINE Alu -14 296 1 188 323 71 30 chr13 53033391 53033490 -66711408 - MIR3 SINE MIR -15 193 91 232 360 70 25 chr13 53034087 53034287 -66710611 + L2 LINE L2 2874 3082 -190 226 341 123 31 chr13 53034430 53034779 -66710119 - L2 LINE L2 -831 2483 2103 375 331 0 0 chr13 53034780 53034901 -66709997 + LTR33 LTR ERVL 1 121 -400 451 278 69 6 chr13 53035084 53035257 -66709641 + LTR33 LTR ERVL 333 516 -5 202 318 202 43 chr13 53035300 53035558 -66709340 - L2 LINE L2 -1285 2029 1731 314 328 30 0 chr13 53035643 53035774 -66709124 - L2 LINE L2 -663 2651 2517 348 24 0 0 chr13 53039077 53039118 -66705780 + (CCA)n Simple_repeat Simple_repeat 3 43 0 257 271 93 25 chr13 53039812 53039930 -66704968 + MER94 DNA DNA 8 133 -1 24 0 0 0 chr13 53042384 53042408 -66702490 + AT_rich Low_complexity Low_complexity 1 24 0 268 350 106 50 chr13 53042687 53043110 -66701788 + L2 LINE L2 2211 2657 -657 765 236 91 5 chr13 53043483 53043682 -66701216 - MER20 DNA MER1_type -1 218 3 22 35 0 0 chr13 53044899 53044928 -66699970 + AT_rich Low_complexity Low_complexity 1 29 0 1892 125 3 7 chr13 53045069 53045356 -66699542 - AluSx SINE Alu -26 286 1 334 200 40 60 chr13 53046598 53046698 -66698200 + MIR SINE MIR 158 255 -7 483 232 76 27 chr13 53047224 53047409 -66697489 + L1ME1 LINE L1 2000 2193 -4203 387 236 187 0 chr13 53047413 53047626 -66697272 + L1ME1 LINE L1 2230 2480 -3735 316 249 56 67 chr13 53047615 53047884 -66697014 + L1ME1 LINE L1 3199 3464 -2751 * 2035 246 47 27 chr13 53047965 53048602 -66696296 + L1ME1 LINE L1 5563 6212 -23 1208 157 14 5 chr13 53048613 53048823 -66696075 - AluSg/x SINE Alu -24 288 77 382 143 0 0 chr13 53048898 53048954 -66695944 - L1PA8A LINE L1 -7 6124 6069 1485 272 153 22 chr13 53051813 53052622 -66692276 - L1ME2 LINE L1 -5 6657 5742 243 228 0 18 chr13 53052628 53052685 -66692213 + (TA)n Simple_repeat Simple_repeat 1 56 0 514 279 42 5 chr13 53053145 53053360 -66691538 - L1ME2 LINE L1 -3189 3455 3233 858 252 71 53 chr13 53053360 53053723 -66691175 + MLT1A2 LTR MaLR 1 374 0 942 270 50 38 chr13 53053749 53054145 -66690753 - L1ME2 LINE L1 -3431 3213 2813 264 200 62 0 chr13 53054208 53054273 -66690625 + Tigger2 DNA MER2_type 1 69 -2649 * 920 133 53 7 chr13 53054263 53054414 -66690484 + Tigger2 DNA MER2_type 2273 2430 -288 394 249 88 10 chr13 53054446 53054707 -66690191 - L1ME2 LINE L1 -3925 2745 2482 493 280 32 11 chr13 53054899 53055088 -66689810 - L1ME2 LINE L1 -4581 2244 2052 1456 250 73 30 chr13 53055091 53055664 -66689234 - L1MB8 LINE L1 -13 6165 5568 4348 239 37 31 chr13 53055664 53056159 -66688739 - L1MA9 LINE L1 -42 6270 5779 195 42 0 0 chr13 53056159 53056183 -66688715 + (CA)n Simple_repeat Simple_repeat 2 25 0 4348 239 37 31 chr13 53056183 53057511 -66687387 - L1MA9 LINE L1 -533 5779 3289 243 61 0 0 chr13 53057617 53057650 -66687248 + (CAATA)n Simple_repeat Simple_repeat 3 35 0 1558 252 103 26 chr13 53057660 53058377 -66686521 + L1 LINE L1 2535 3306 -2840 253 284 90 62 chr13 53058482 53058917 -66685981 - L1ME2 LINE L1 -4834 1708 1290 283 291 97 49 chr13 53059117 53059364 -66685534 - MLT1L LTR MaLR -4 611 353 1661 251 108 37 chr13 53059395 53059968 -66684930 - MLT1E3 LTR MaLR -3 621 8 579 243 58 86 chr13 53060012 53060255 -66684643 - MER8 DNA MER2_type -1 238 3 21 0 0 0 chr13 53060666 53060687 -66684211 + AT_rich Low_complexity Low_complexity 1 21 0 2136 113 20 0 chr13 53062226 53062527 -66682371 + AluSp SINE Alu 1 307 -6 1177 77 6 12 chr13 53062658 53062826 -66682072 - L1PA10 LINE L1 0 6168 6002 258 311 58 19 chr13 53063136 53063239 -66681659 + MIR SINE MIR 14 120 -142 288 0 0 0 chr13 53063972 53064004 -66680894 + (A)n Simple_repeat Simple_repeat 1 32 0 2001 122 20 7 chr13 53065445 53065739 -66679159 + AluSx SINE Alu 1 298 -14 1602 189 113 6 chr13 53066015 53066370 -66678528 + MSTD LTR MaLR 4 396 0 184 162 54 0 chr13 53066730 53066767 -66678131 - L3b LINE CR1 -242 1341 1303 180 269 161 54 chr13 53068866 53068959 -66675939 - MIR SINE MIR -66 142 40 187 330 62 45 chr13 53069545 53069657 -66675241 + L2 LINE L2 3151 3264 -8 21 36 0 0 chr13 53069792 53069820 -66675078 + AT_rich Low_complexity Low_complexity 1 28 0 1604 174 19 32 chr13 53070396 53070712 -66674186 + AluJo SINE Alu 1 312 0 282 268 138 29 chr13 53071049 53071187 -66673711 + MIR SINE MIR 76 228 -34 330 181 0 42 chr13 53073015 53073085 -66671813 - MLT1I LTR MaLR -2 407 341 1032 257 9 0 chr13 53073085 53073303 -66671595 + MER58A DNA MER1_type 2 221 -3 1548 280 61 45 chr13 53073589 53074120 -66670778 - L2 LINE L2 -1082 2232 1686 2300 226 44 18 chr13 53074120 53074739 -66670159 - LTR27 LTR ERV1 0 636 2 1548 280 61 45 chr13 53074739 53074910 -66669988 - L2 LINE L2 -1628 1686 1519 924 301 23 4 chr13 53076260 53076618 -66668280 - L2 LINE L2 -256 3057 2695 428 298 0 8 chr13 53076632 53076756 -66668142 - FLAM_C SINE Alu -20 123 1 226 301 14 14 chr13 53076764 53076837 -66668061 - L2 LINE L2 -637 2677 2605 1963 88 38 69 chr13 53077061 53077380 -66667518 - AluSc SINE Alu 0 309 1 1605 189 16 22 chr13 53078248 53078561 -66666337 - AluJb SINE Alu 0 312 2 1320 283 103 9 chr13 53078661 53079234 -66665664 + Charlie7 DNA MER1_type 63 689 -1923 567 310 102 28 chr13 53079516 53079880 -66665018 - MLT1J1 LTR MaLR -41 405 15 1599 201 69 6 chr13 53081461 53081824 -66663074 - MLT1B LTR MaLR -3 387 2 447 266 90 43 chr13 53083057 53083245 -66661653 + L2 LINE L2 3117 3313 0 778 189 104 15 chr13 53083322 53083523 -66661375 + MER20 DNA MER1_type 1 219 0 27 62 0 0 chr13 53083737 53083785 -66661113 + AT_rich Low_complexity Low_complexity 1 48 0 1450 337 113 31 chr13 53083862 53085062 -66659836 - L2 LINE L2 -407 2907 1610 578 320 53 5 chr13 53085075 53085281 -66659617 + LTR50 LTR ERVL 5 220 -575 342 282 100 0 chr13 53085385 53085495 -66659403 + LTR50 LTR ERVL 485 605 -190 256 272 43 33 chr13 53085531 53085623 -66659275 + LTR33A LTR ERVL 411 503 -20 205 139 23 151 chr13 53085709 53085795 -66659103 - L2 LINE L2 -1923 1391 1317 24 0 0 0 chr13 53085852 53085876 -66659022 + AT_rich Low_complexity Low_complexity 1 24 0 944 218 24 10 chr13 53086096 53086302 -66658596 + MER6B DNA MER2_type 1 209 -1 980 226 69 85 chr13 53086349 53086725 -66658173 - MLT1A2 LTR MaLR -4 370 1 953 184 6 0 chr13 53086946 53087109 -66657789 - AluJb SINE Alu -12 300 137 2526 68 0 0 chr13 53087112 53087419 -66657479 - AluY SINE Alu -4 307 1 559 184 119 0 chr13 53087509 53087618 -66657280 - FLAM_A SINE Alu -11 122 1 712 248 64 5 chr13 53088148 53088350 -66656548 - MIR SINE MIR -18 244 31 21 71 0 0 chr13 53089094 53089136 -66655762 + AT_rich Low_complexity Low_complexity 1 42 0 318 224 50 93 chr13 53092234 53092395 -66652503 - MER51A LTR ERV1 -49 591 438 574 224 75 0 chr13 53092774 53092908 -66651990 - MER3 DNA MER1_type -59 150 7 907 215 37 23 chr13 53093493 53093707 -66651191 + MER20 DNA MER1_type 2 218 -1 235 301 0 0 chr13 53093734 53093807 -66651091 - MLT1K LTR MaLR -50 538 466 260 256 56 33 chr13 53093956 53094046 -66650852 - MLT1L LTR MaLR -345 270 179 264 329 21 35 chr13 53094537 53094680 -66650218 + MIR SINE MIR 122 262 0 324 343 0 57 chr13 53095309 53095449 -66649449 - MIR SINE MIR -111 151 20 1716 309 24 17 chr13 53096421 53096805 -66648093 - MLT1H1 LTR MaLR -8 547 156 3815 107 0 11 chr13 53096805 53097368 -66647530 - L1PA13 LINE L1 0 6163 5607 1716 309 24 17 chr13 53097368 53097526 -66647372 - MLT1H1 LTR MaLR -399 156 1 23 0 0 0 chr13 53100226 53100249 -66644649 + AT_rich Low_complexity Low_complexity 1 23 0 245 349 65 24 chr13 53100366 53100535 -66644363 + L1ME LINE L1 394 569 -5636 238 317 134 31 chr13 53100992 53101216 -66643682 + L1ME LINE L1 585 831 -5286 284 294 48 73 chr13 53101287 53101535 -66643363 + L1ME LINE L1 2204 2445 -3951 2555 232 158 105 chr13 53101559 53102817 -66642081 + L1ME LINE L1 2499 3689 -2546 1212 208 41 4 chr13 53102817 53103062 -66641836 + MLT2B2 LTR ERVL 1 254 -261 2555 232 158 105 chr13 53103062 53104243 -66640655 + L1ME LINE L1 3689 5346 -889 189 0 0 0 chr13 53104243 53104264 -66640634 + (GA)n Simple_repeat Simple_repeat 2 22 0 2555 232 158 105 chr13 53104264 53104458 -66640440 + L1ME LINE L1 5346 5528 -707 377 263 67 51 chr13 53104497 53104750 -66640148 + L1ME LINE L1 3671 3932 -2214 312 331 86 13 chr13 53104962 53105812 -66639086 + L1ME LINE L1 4743 5672 -498 24 0 0 0 chr13 53105905 53105929 -66638969 + AT_rich Low_complexity Low_complexity 1 24 0 304 287 24 37 chr13 53107344 53107508 -66637390 - L1M4 LINE L1 -3872 2274 2113 23 33 0 0 chr13 53107799 53107829 -66637069 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 53107962 53107991 -66636907 + AT_rich Low_complexity Low_complexity 1 29 0 5248 158 52 9 chr13 53107991 53109145 -66635753 - L1MA7 LINE L1 0 6291 5089 2041 204 41 7 chr13 53111974 53112385 -66632513 + MSTB LTR MaLR 2 426 0 28 71 0 0 chr13 53114123 53114179 -66630719 + AT_rich Low_complexity Low_complexity 1 56 0 5504 160 15 16 chr13 53114188 53115222 -66629676 + L1MA7 LINE L1 5259 6291 0 25 21 0 43 chr13 53116632 53116656 -66628242 + AT_rich Low_complexity Low_complexity 1 24 -21 8545 39 11 3 chr13 53116656 53118479 -66626419 + L1PA5 LINE L1 4325 6154 0 25 21 0 43 chr13 53118479 53118501 -66626397 + AT_rich Low_complexity Low_complexity 24 45 0 3280 115 10 4 chr13 53118781 53119285 -66625613 + L1PA11 LINE L1 5668 6174 0 264 326 70 0 chr13 53119504 53119590 -66625308 + L2 LINE L2 3177 3268 -4 1585 145 26 36 chr13 53119785 53120088 -66624810 - AluJb SINE Alu -2 310 11 258 323 169 36 chr13 53120570 53120818 -66624080 + L2 LINE L2 1852 2132 -1182 446 61 15 0 chr13 53120905 53120971 -66623927 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1769 166 11 0 chr13 53120974 53121257 -66623641 - AluSx SINE Alu -26 286 1 1572 249 75 36 chr13 53121276 53121798 -66623100 - MLT1F LTR MaLR 0 542 1 184 354 111 0 chr13 53121928 53122027 -66622871 + L2 LINE L2 2383 2492 -822 257 316 32 11 chr13 53122961 53123056 -66621842 - MIR3 SINE MIR 0 208 112 22 0 0 0 chr13 53123202 53123224 -66621674 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr13 53123683 53123735 -66621163 + AT_rich Low_complexity Low_complexity 1 52 0 261 319 132 56 chr13 53124746 53125034 -66619864 - L2 LINE L2 -968 2346 2037 189 0 0 0 chr13 53126068 53126089 -66618809 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 257 0 30 0 chr13 53126088 53126121 -66618777 + (GA)n Simple_repeat Simple_repeat 1 34 0 233 276 24 0 chr13 53128215 53128338 -66616560 + (TA)n Simple_repeat Simple_repeat 2 127 0 246 62 0 0 chr13 53129145 53129177 -66615721 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 210 205 0 0 chr13 53129178 53129217 -66615681 - L2 LINE L2 -13 3259 3221 236 345 0 12 chr13 53130747 53130831 -66614067 - L2 LINE L2 -4 3309 3227 22 43 0 21 chr13 53134995 53135013 -66609885 + AT_rich Low_complexity Low_complexity 1 18 -28 2401 154 12 44 chr13 53135013 53135494 -66609404 - L1MB1 LINE L1 -1 6167 5702 22 43 0 21 chr13 53135494 53135522 -66609376 + AT_rich Low_complexity Low_complexity 18 46 0 235 323 47 39 chr13 53135718 53135845 -66609053 + MIR SINE MIR 67 194 -68 599 278 26 26 chr13 53135856 53136047 -66608851 - MIR SINE MIR -21 241 51 248 281 112 0 chr13 53136483 53136572 -66608326 + MIR SINE MIR 164 262 0 277 286 141 30 chr13 53136877 53137139 -66607759 + HAL1 LINE L1 82 372 -2135 832 258 43 36 chr13 53137308 53137637 -66607261 + HAL1 LINE L1 2177 2507 0 279 341 0 0 chr13 53138119 53138207 -66606691 - L3 LINE CR1 -6 1571 1484 1767 127 0 4 chr13 53138448 53138715 -66606183 - L1M1 LINE L1 -524 5779 5514 386 253 133 24 chr13 53139452 53139618 -66605280 + L2 LINE L2 3001 3184 -129 3324 197 15 20 chr13 53139655 53140305 -66604593 - MER52A LTR ERV1 -35 1720 1074 235 289 13 0 chr13 53140539 53140615 -66604283 - MER52A LTR ERV1 -1678 77 1 648 302 99 23 chr13 53140795 53141351 -66603547 - L1ME4a LINE L1 -122 5999 5402 1198 158 0 36 chr13 53141563 53141810 -66603088 - L1MA9 LINE L1 0 6312 6075 423 287 98 16 chr13 53141815 53142059 -66602839 - L1ME4a LINE L1 -3651 2495 2232 24 0 0 0 chr13 53142242 53142266 -66602632 + AT_rich Low_complexity Low_complexity 1 24 0 5604 112 24 35 chr13 53142323 53142691 -66602207 - L1PB1 LINE L1 -1 6150 5779 348 24 0 0 chr13 53142691 53142732 -66602166 + (TG)n Simple_repeat Simple_repeat 2 42 0 5604 112 24 35 chr13 53142732 53143437 -66601461 - L1PB1 LINE L1 -372 5779 5090 4073 191 41 0 chr13 53143433 53143930 -66600968 + L1 LINE L1 3892 4440 -1706 * 189 0 0 0 chr13 53143930 53143951 -66600947 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 4073 191 41 0 chr13 53143951 53144310 -66600588 + L1 LINE L1 4440 4783 -1363 226 231 0 0 chr13 53144868 53144907 -66599991 + MIR SINE MIR 203 241 -21 218 305 17 0 chr13 53144874 53144933 -66599965 + L2 LINE L2 3213 3272 0 * 2276 95 0 0 chr13 53145091 53145387 -66599511 - AluSq SINE Alu -17 296 1 5585 109 57 6 chr13 53145580 53146598 -66598300 - L1PA14 LINE L1 0 6161 5099 489 194 11 0 chr13 53146654 53146747 -66598151 - AluJo SINE Alu -92 220 127 21 0 0 0 chr13 53147312 53147333 -66597565 + AT_rich Low_complexity Low_complexity 1 21 0 427 245 87 16 chr13 53148115 53148299 -66596599 + L1MC5 LINE L1 7729 7925 -36 1064 262 58 62 chr13 53148713 53149228 -66595670 + LTR40a LTR ERVL 5 517 -2 847 219 81 0 chr13 53150467 53150713 -66594185 + L1MD3 LINE L1 7730 7995 0 22 0 0 0 chr13 53150722 53150744 -66594154 + AT_rich Low_complexity Low_complexity 1 22 0 237 132 0 0 chr13 53152497 53152535 -66592363 + (A)n Simple_repeat Simple_repeat 1 38 0 27 0 0 0 chr13 53152654 53152681 -66592217 + AT_rich Low_complexity Low_complexity 1 27 0 223 331 24 48 chr13 53152933 53153057 -66591841 + MER5A DNA MER1_type 68 188 -1 349 277 135 0 chr13 53154963 53155111 -66589787 - MER46C DNA MER2_type -170 168 1 977 79 0 22 chr13 53156799 53156938 -66587960 - AluY SINE Alu -7 304 169 271 366 10 20 chr13 53157943 53158044 -66586854 + MIR SINE MIR 26 125 -83 24 53 0 0 chr13 53158820 53158858 -66586040 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 53158986 53159008 -66585890 + AT_rich Low_complexity Low_complexity 1 22 0 540 321 78 44 chr13 53159132 53159493 -66585405 + LTR67 LTR ERVL 159 531 -26 249 246 31 0 chr13 53159764 53159829 -66585069 + MLT1J2 LTR MaLR 67 133 -317 2033 156 33 0 chr13 53159834 53160168 -66584730 + L1PA15 LINE L1 5821 6165 0 1355 146 105 70 chr13 53160361 53160749 -66584149 + MER67C LTR ERV1 2 403 -246 226 176 44 54 chr13 53160859 53160964 -66583934 + MLT1J1 LTR MaLR 343 445 -5 323 78 20 0 chr13 53161008 53161059 -66583839 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 246 136 0 0 chr13 53161542 53161586 -66583312 + (GA)n Simple_repeat Simple_repeat 1 44 0 1970 158 33 25 chr13 53161786 53162147 -66582751 - THE1B LTR MaLR 0 364 1 268 222 63 0 chr13 53162338 53162401 -66582497 + MLT1J2 LTR MaLR 2 68 -382 340 321 59 16 chr13 53162536 53162723 -66582175 + MLT1J1 LTR MaLR 252 446 0 205 333 163 0 chr13 53162786 53162933 -66581965 - MIR SINE MIR -44 218 48 264 265 33 86 chr13 53164500 53164651 -66580247 - MLT1L LTR MaLR -387 228 86 304 315 105 21 chr13 53164707 53164850 -66580048 - MIR SINE MIR -102 160 6 372 260 19 19 chr13 53165129 53165233 -66579665 - MIR SINE MIR 0 262 159 545 331 72 31 chr13 53165333 53165692 -66579206 - MLT1J LTR MaLR -110 401 28 230 231 43 0 chr13 53165955 53166072 -66578826 + (TA)n Simple_repeat Simple_repeat 2 123 0 450 211 9 0 chr13 53167664 53167773 -66577125 - L1MB8 LINE L1 -1 6177 6068 2103 225 67 13 chr13 53167779 53168436 -66576462 - L1MB8 LINE L1 -181 6008 5293 1555 207 20 43 chr13 53168442 53168724 -66576174 - L1MB8 LINE L1 -1214 4932 4660 2883 3 0 0 chr13 53168724 53169035 -66575863 - AluYa5 SINE Alu 0 311 1 1555 207 20 43 chr13 53169035 53169143 -66575755 - L1MB8 LINE L1 -1486 4660 4551 1291 261 57 20 chr13 53169143 53169549 -66575349 + MLT1D LTR MaLR 1 421 -84 976 224 33 24 chr13 53169587 53169918 -66574980 - L1MB8 LINE L1 -1583 4563 4230 1157 251 48 20 chr13 53169922 53170280 -66574618 + L1MC4a LINE L1 7435 7802 -6 2347 94 0 0 chr13 53170324 53170623 -66574275 - AluSx SINE Alu -13 299 1 300 91 0 0 chr13 53170992 53171036 -66573862 + (CA)n Simple_repeat Simple_repeat 2 45 0 2236 189 11 11 chr13 53172560 53173030 -66571868 - L1MB1 LINE L1 -1 6167 5698 1213 184 5 167 chr13 53173078 53173708 -66571190 + L1M3 LINE L1 5159 5688 -495 266 343 126 8 chr13 53177091 53177399 -66567499 - L2 LINE L2 -206 3066 2716 596 97 11 0 chr13 53177403 53177496 -66567402 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 617 86 0 0 chr13 53177496 53177577 -66567321 - AluSq SINE Alu -30 283 203 * 747 110 0 0 chr13 53177573 53177682 -66567216 - AluSq SINE Alu -204 109 1 400 329 85 41 chr13 53177689 53178100 -66566798 - L2 LINE L2 -606 2708 2280 1214 216 60 0 chr13 53178102 53178449 -66566449 - Looper DNA T2_type -1190 368 1 1252 261 71 55 chr13 53178483 53179078 -66565820 - L1ME1 LINE L1 -5 6161 5558 1068 217 15 120 chr13 53179089 53179191 -66565707 + MLT1A1 LTR MaLR 13 124 -241 1229 231 102 14 chr13 53179191 53179555 -66565343 - MSTD LTR MaLR 0 396 1 1068 217 15 120 chr13 53179555 53179844 -66565054 + MLT1A1 LTR MaLR 124 363 -2 791 263 75 3 chr13 53179853 53180201 -66564697 - L1ME1 LINE L1 -605 5559 5187 257 103 0 59 chr13 53180201 53180269 -66564629 + (TTCCC)n Simple_repeat Simple_repeat 5 68 0 490 219 22 17 chr13 53180403 53180581 -66564317 + CT-rich Low_complexity Low_complexity 1 179 0 1332 241 58 0 chr13 53180587 53180986 -66563912 - L1ME1 LINE L1 -966 5180 4759 930 256 0 0 chr13 53180991 53181186 -66563712 + MER58A DNA MER1_type 6 200 -24 5029 179 23 21 chr13 53181294 53181647 -66563251 - L1M2 LINE L1 -513 5787 5436 2257 140 91 5 chr13 53181647 53182041 -66562857 - MSTA LTR MaLR 0 428 1 5029 179 23 21 chr13 53182041 53183263 -66561635 - L1M2 LINE L1 -864 5436 4194 2240 152 5 12 chr13 53183266 53183680 -66561218 + L1MA5 LINE L1 5884 6294 -6 545 254 109 12 chr13 53183700 53183956 -66560942 - L1ME1 LINE L1 -1517 4629 4349 537 204 92 47 chr13 53183949 53184003 -66560895 - L1ME1 LINE L1 -2308 3838 3788 * 2243 135 28 25 chr13 53184003 53184366 -66560532 + THE1B LTR MaLR 1 364 0 11360 103 9 0 chr13 53184366 53185932 -66558966 + THE1B-int LTR MaLR 1 1580 0 2184 140 27 30 chr13 53185932 53186297 -66558601 + THE1B LTR MaLR 1 364 0 537 204 92 47 chr13 53186297 53186415 -66558483 - L1ME1 LINE L1 -2357 3789 3656 990 271 81 11 chr13 53186422 53186774 -66558124 - MLT1E2 LTR MaLR -4 622 208 366 232 56 14 chr13 53186874 53187016 -66557882 - L1M4 LINE L1 -966 5180 5033 376 202 0 0 chr13 53187016 53187093 -66557805 - MLT1E3 LTR MaLR -446 208 86 544 274 13 0 chr13 53187158 53187311 -66557587 - L1ME1 LINE L1 -2489 3657 3503 4109 267 30 16 chr13 53187336 53188900 -66555998 + L1 LINE L1 16 2287 -5278 1080 118 18 6 chr13 53188903 53189072 -66555826 - MSTA-int LTR MaLR -1407 173 3 1879 177 105 5 chr13 53189074 53189463 -66555435 - MSTA LTR MaLR 0 428 1 3388 181 20 6 chr13 53189463 53190161 -66554737 + L1 LINE L1 5511 6218 -1347 5332 247 22 17 chr13 53190175 53192237 -66552661 + L1PBa LINE L1 3 1644 -5219 3663 90 16 23 chr13 53192238 53192978 -66551920 - MER11A LTR ERVK -438 798 1 2876 179 17 13 chr13 53192978 53193580 -66551318 + L1PBb LINE L1 475 1080 -5124 332 339 109 72 chr13 53193810 53194425 -66550473 + L2 LINE L2 2261 2940 -373 2895 116 5 2 chr13 53194425 53194857 -66550041 - L1PB2 LINE L1 -10 6141 5709 332 339 109 72 chr13 53194857 53195196 -66549702 + L2 LINE L2 2940 3265 -48 2285 101 0 3 chr13 53195395 53195693 -66549205 + AluSg SINE Alu 1 297 -13 42 57 0 0 chr13 53195703 53195773 -66549125 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 53195786 53195807 -66549091 + AT_rich Low_complexity Low_complexity 1 21 0 284 192 27 68 chr13 53196266 53196339 -66548559 - MLT1I LTR MaLR 0 409 344 1783 220 123 57 chr13 53196343 53197117 -66547781 + LTR1B LTR ERV1 1 825 -1 338 325 98 45 chr13 53198215 53198461 -66546437 - MIR SINE MIR -1 261 3 378 0 0 0 chr13 53200028 53200070 -66544828 + (TTA)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr13 53200820 53200850 -66544048 + AT_rich Low_complexity Low_complexity 1 30 0 26008 55 9 2 chr13 53201585 53205741 -66539157 + L1PA5 LINE L1 1959 6149 -5 1561 225 53 30 chr13 53205729 53206293 -66538605 + L1M4 LINE L1 4472 5048 -1098 * 333 300 72 60 chr13 53207481 53207731 -66537167 + Charlie8 DNA MER1_type 1 253 -2164 253 245 32 64 chr13 53207726 53207820 -66537078 + Charlie8 DNA MER1_type 2326 2416 -1 * 1010 125 74 0 chr13 53208961 53209137 -66535761 + THE1C LTR MaLR 185 373 -2 2508 151 29 33 chr13 53209139 53209786 -66535112 - L1P4 LINE L1 -435 5731 5093 27 29 0 0 chr13 53210469 53210503 -66534395 + AT_rich Low_complexity Low_complexity 1 34 0 310 151 27 14 chr13 53210802 53210875 -66534023 + GA-rich Low_complexity Low_complexity 2 75 0 217 151 38 0 chr13 53211260 53211313 -66533585 + CT-rich Low_complexity Low_complexity 2 56 0 257 246 49 0 chr13 53212640 53212701 -66532197 + MER46C DNA MER2_type 1 64 -274 795 273 23 8 chr13 53212783 53213039 -66531859 + MER46C DNA MER2_type 79 338 0 3850 129 20 61 chr13 53213799 53214505 -66530393 - L1PA13 LINE L1 -11 6152 5476 252 51 0 0 chr13 53214505 53214544 -66530354 - AluJb SINE Alu -2 306 268 1334 118 29 13 chr13 53214544 53214814 -66530084 - L1PA13 LINE L1 -678 5490 5217 545 202 8 0 chr13 53214815 53214934 -66529964 + L1P LINE L1 4256 4375 -1771 * 2078 258 24 6 chr13 53214933 53215600 -66529298 - L1P3 LINE L1 -4247 2214 1545 277 188 0 14 chr13 53215580 53215649 -66529249 - L1 LINE L1 -1087 5059 4992 * 1690 175 3 7 chr13 53215660 53215946 -66528952 - AluJb SINE Alu -27 285 1 3408 187 5 0 chr13 53215946 53216581 -66528317 - L1PA13 LINE L1 -1130 5016 4379 260 167 0 0 chr13 53216585 53216633 -66528265 - L1PA13 LINE L1 -1879 4267 4220 * 544 261 22 0 chr13 53216629 53216767 -66528131 + L1P LINE L1 1894 2034 -4112 22 0 0 0 chr13 53217216 53217238 -66527660 + AT_rich Low_complexity Low_complexity 1 22 0 2184 149 48 26 chr13 53217348 53217765 -66527133 - MSTA LTR MaLR 0 428 3 1066 218 44 98 chr13 53217865 53218251 -66526647 + MLT1A1 LTR MaLR 1 365 0 2362 199 12 91 chr13 53218259 53218908 -66525990 + MLT1A1-int LTR MaLR 9 606 -1129 1408 192 7 38 chr13 53218908 53219223 -66525675 + AluJo SINE Alu 1 306 0 252 325 17 42 chr13 53220595 53220715 -66524183 - L2 LINE L2 -615 2699 2583 21 0 0 0 chr13 53221976 53221997 -66522901 + AT_rich Low_complexity Low_complexity 1 21 0 2258 102 0 0 chr13 53222062 53222365 -66522533 - AluSg SINE Alu -7 303 1 254 271 195 48 chr13 53222671 53222963 -66521935 - L1MC4a LINE L1 -1630 6178 5844 264 282 99 7 chr13 53222979 53223121 -66521777 - L1MC4a LINE L1 -1894 5914 5760 25 65 0 0 chr13 53223779 53223825 -66521073 + AT_rich Low_complexity Low_complexity 1 46 0 249 266 178 47 chr13 53223843 53223945 -66520953 - MIR SINE MIR 0 262 175 2037 114 3 7 chr13 53223945 53224235 -66520663 - AluSx SINE Alu -23 289 1 249 266 178 47 chr13 53224235 53224301 -66520597 - MIR SINE MIR -87 175 72 383 266 53 11 chr13 53226022 53226116 -66518782 - MER81 DNA DNA 0 114 17 25 31 0 0 chr13 53227176 53227208 -66517690 + AT_rich Low_complexity Low_complexity 1 32 0 5344 134 36 20 chr13 53227858 53228909 -66515989 - MER11B LTR ERVK -24 1047 1 252 0 0 0 chr13 53229047 53229075 -66515823 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 788 268 103 0 chr13 53229725 53229949 -66514949 + MIR SINE MIR 1 247 -15 23 0 0 0 chr13 53229976 53229999 -66514899 + AT_rich Low_complexity Low_complexity 1 23 0 266 258 15 0 chr13 53231693 53231759 -66513139 + MER94 DNA DNA 1 67 -67 423 0 0 0 chr13 53233169 53233216 -66511682 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3603 161 111 16 chr13 53237232 53237986 -66506912 + LTR1B LTR ERV1 1 826 0 2395 61 0 7 chr13 53238082 53238379 -66506519 - AluY SINE Alu -16 295 1 495 245 184 22 chr13 53238513 53238705 -66506193 + MIR SINE MIR 34 248 -14 440 339 16 16 chr13 53239727 53239910 -66504988 + MER5A DNA MER1_type 7 189 0 2081 139 11 11 chr13 53241483 53241843 -66503055 - L1PB4 LINE L1 -12 6144 5785 263 242 27 23 chr13 53241882 53241993 -66502905 - L1MCa LINE L1 -1333 6989 2007 250 238 125 0 chr13 53241935 53242015 -66502883 + L1MC4 LINE L1 6614 6703 -1339 * 649 134 27 9 chr13 53242029 53242141 -66502757 - L1PB4 LINE L1 -368 5788 5675 4967 161 24 6 chr13 53242143 53243548 -66501350 - L1PA15 LINE L1 -3 7600 6195 5756 259 36 44 chr13 53243669 53244445 -66500453 - L1PA15 LINE L1 -3080 4504 3723 894 188 0 7 chr13 53244445 53244599 -66500299 - AluSg/x SINE Alu -15 297 145 5756 259 36 44 chr13 53244599 53247955 -66496943 - L1PA15 LINE L1 -3861 3723 8 4152 186 36 25 chr13 53247975 53249252 -66495646 - L1P5 LINE L1 -474 5682 4402 294 376 85 14 chr13 53249321 53249603 -66495295 - L2 LINE L2 -823 2491 2190 30 0 0 0 chr13 53249610 53249640 -66495258 + AT_rich Low_complexity Low_complexity 1 30 0 2048 148 23 0 chr13 53249806 53250151 -66494747 - L1MA3 LINE L1 -469 5836 5484 390 304 154 20 chr13 53251026 53251227 -66493671 - MIR SINE MIR 0 262 35 26 30 0 0 chr13 53251290 53251323 -66493575 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 53251948 53251969 -66492929 + AT_rich Low_complexity Low_complexity 1 21 0 32 43 0 0 chr13 53252034 53252080 -66492818 + AT_rich Low_complexity Low_complexity 1 46 0 657 299 68 4 chr13 53252342 53252576 -66492322 - MIR SINE MIR 0 262 14 934 203 92 103 chr13 53252726 53253095 -66491803 - MLT1A1 LTR MaLR 0 365 1 184 277 205 24 chr13 53253645 53253728 -66491170 + L2 LINE L2 3171 3268 -4 2363 51 0 0 chr13 53256256 53256549 -66488349 - L1PA7 LINE L1 0 6154 5862 11214 136 25 20 chr13 53256726 53258640 -66486258 - Tigger1 DNA MER2_type -1 2417 495 948 147 7 0 chr13 53258635 53258778 -66486120 - Tigger1 DNA MER2_type -951 1467 1324 * 2160 166 49 42 chr13 53258832 53259285 -66485613 - Tigger1 DNA MER2_type -1957 461 6 1292 114 0 6 chr13 53259285 53259461 -66485437 + AluSg SINE Alu 1 175 -135 494 301 75 0 chr13 53259578 53259724 -66485174 - MIR SINE MIR -75 187 31 556 265 95 9 chr13 53259738 53259949 -66484949 + MIR SINE MIR 24 252 -10 21 0 0 0 chr13 53261695 53261716 -66483182 + AT_rich Low_complexity Low_complexity 1 21 0 1467 172 7 36 chr13 53263062 53263365 -66481533 - AluSx SINE Alu -18 294 1 272 356 7 14 chr13 53263581 53263727 -66481171 + GA-rich Low_complexity Low_complexity 1 145 0 356 221 139 0 chr13 53264599 53264685 -66480213 + L2 LINE L2 3174 3271 -1 1545 194 0 47 chr13 53266220 53266540 -66478358 + AluJb SINE Alu 2 306 -6 346 134 15 0 chr13 53266552 53266619 -66478279 + L1MA9 LINE L1 6244 6311 -1 228 111 0 0 chr13 53268446 53268482 -66476416 + (GA)n Simple_repeat Simple_repeat 1 36 0 295 321 106 44 chr13 53269792 53270085 -66474813 - L2 LINE L2 -521 2793 2483 951 193 0 6 chr13 53271679 53271855 -66473043 + AluJb SINE Alu 137 311 -1 2066 196 20 18 chr13 53273200 53273658 -66471240 - LTR40b LTR ERVL 0 462 4 204 267 69 30 chr13 53274237 53274338 -66470560 + MIR SINE MIR 94 198 -64 1657 147 3 45 chr13 53274793 53275105 -66469793 + AluSq SINE Alu 5 303 -10 2226 116 134 8 chr13 53275421 53275801 -66469097 - MSTA LTR MaLR 0 428 1 198 378 102 0 chr13 53276273 53276371 -66468527 + L2 LINE L2 2917 3024 -248 2149 86 31 20 chr13 53276948 53277240 -66467658 - AluSc SINE Alu -14 295 1 21 0 0 0 chr13 53279031 53279052 -66465846 + AT_rich Low_complexity Low_complexity 1 21 0 452 286 16 0 chr13 53279093 53279219 -66465679 + MER94 DNA DNA 7 134 0 6854 139 36 19 chr13 53279374 53280572 -66464326 + Tigger3b DNA MER2_type 14 1231 0 658 158 50 127 chr13 53280728 53280949 -66463949 - MER3 DNA MER1_type -4 205 2 211 358 159 23 chr13 53280954 53281300 -66463598 + L2 LINE L2 2582 2974 -340 25 31 0 0 chr13 53281802 53281834 -66463064 + AT_rich Low_complexity Low_complexity 1 32 0 2530 80 131 5 chr13 53281973 53282371 -66462527 - LTR7 LTR ERV1 -2 448 1 2267 119 48 13 chr13 53282371 53282750 -66462148 - HERVH LTR ERV1 0 7713 7322 1440 120 19 0 chr13 53282748 53282964 -66461934 - HERVH LTR ERV1 -1894 5819 5600 * 3528 126 2 2 chr13 53282965 53283480 -66461418 - HERVH LTR ERV1 -2564 5149 4635 2331 167 6 25 chr13 53283480 53283948 -66460950 - HERVH LTR ERV1 -2749 4622 3954 * 3462 109 0 6 chr13 53283934 53284439 -66460459 - HERVH LTR ERV1 -3720 3993 3492 972 127 7 0 chr13 53284429 53284579 -66460319 - HERVH LTR ERV1 -4423 3290 3140 * 14582 101 9 19 chr13 53284573 53286791 -66458107 - HERVH LTR ERV1 -4726 2987 793 3177 87 0 23 chr13 53286845 53287315 -66457583 - HERVH LTR ERV1 -7254 459 1 2498 88 131 5 chr13 53287317 53287715 -66457183 - LTR7 LTR ERV1 -2 448 1 324 279 176 60 chr13 53288439 53288672 -66456226 - MIR SINE MIR -1 261 2 1862 80 4 15 chr13 53288922 53289185 -66455713 + L1PA6 LINE L1 5895 6154 0 361 276 114 0 chr13 53289256 53289361 -66455537 + MIR SINE MIR 116 232 -30 2231 164 30 25 chr13 53289396 53289828 -66455070 - Tigger2a DNA MER2_type 0 434 1 292 211 44 56 chr13 53290121 53290211 -66454687 + LTR48B LTR ERV1 1 89 -555 * 849 215 60 78 chr13 53290196 53290578 -66454320 + MER39 LTR ERV1 259 633 -74 24 0 0 0 chr13 53290787 53290811 -66454087 + AT_rich Low_complexity Low_complexity 1 24 0 199 339 0 0 chr13 53292158 53292217 -66452681 - MIR SINE MIR -172 90 32 188 298 106 19 chr13 53292828 53292932 -66451966 - MIR SINE MIR -47 215 103 1952 95 0 8 chr13 53292936 53293188 -66451710 - AluSc SINE Alu -59 250 1 472 303 53 33 chr13 53294111 53294355 -66450543 + L2 LINE L2 1986 2234 -1080 284 261 96 26 chr13 53294424 53294539 -66450359 - L2 LINE L2 0 3313 3191 247 294 0 0 chr13 53294589 53294657 -66450241 + (CA)n Simple_repeat Simple_repeat 1 68 0 865 338 125 14 chr13 53294657 53295502 -66449396 + L2 LINE L2 2375 3313 0 2277 95 0 7 chr13 53295698 53295992 -66448906 - AluSx SINE Alu -20 292 1 308 301 189 0 chr13 53296004 53296147 -66448751 + MIR SINE MIR 70 239 -23 422 363 18 67 chr13 53297525 53297914 -66446984 + L2 LINE L2 2517 2886 -428 231 314 0 0 chr13 53297929 53297999 -66446899 + HsTC2 DNA Tc2 14 83 -1815 1463 216 32 0 chr13 53298689 53298967 -66445931 + AluJb SINE Alu 1 287 -25 393 243 0 0 chr13 53298989 53299096 -66445802 + (TA)n Simple_repeat Simple_repeat 2 108 0 250 282 47 0 chr13 53299112 53299197 -66445701 - L1MC4 LINE L1 -1340 6702 6614 1392 219 68 50 chr13 53299436 53299879 -66445019 + MER74B LTR ERVL 69 519 -103 241 267 13 53 chr13 53300615 53300690 -66444208 + L2 LINE L2 3201 3272 0 302 305 67 0 chr13 53300698 53300803 -66444095 + MIR3 SINE MIR 61 172 -36 21 36 0 0 chr13 53300831 53300859 -66444039 + AT_rich Low_complexity Low_complexity 1 28 0 23 117 0 0 chr13 53301082 53301210 -66443688 + AT_rich Low_complexity Low_complexity 1 128 0 4552 87 45 43 chr13 53302110 53302800 -66442098 - LTR8 LTR ERV1 0 691 1 21 0 0 0 chr13 53303151 53303172 -66441726 + AT_rich Low_complexity Low_complexity 1 21 0 1896 117 26 0 chr13 53303287 53303587 -66441311 - AluSx SINE Alu 0 322 16 31 0 0 0 chr13 53303716 53303747 -66441151 + AT_rich Low_complexity Low_complexity 1 31 0 2766 228 38 39 chr13 53303944 53304987 -66439911 + L1ME1 LINE L1 5149 6334 0 259 366 0 0 chr13 53305859 53305960 -66438938 + L2 LINE L2 3164 3264 -49 1668 260 28 15 chr13 53306220 53306506 -66438392 + L1ME2 LINE L1 5394 5675 -489 3892 128 19 3 chr13 53306506 53307099 -66437799 + LTR43 LTR ERV1 1 602 0 1711 209 18 28 chr13 53307108 53307505 -66437393 - MSTD LTR MaLR 0 396 4 1668 260 28 15 chr13 53307505 53307742 -66437156 + L1ME2 LINE L1 5682 5934 -230 987 221 19 5 chr13 53307799 53308007 -66436891 - MER58A DNA MER1_type -11 213 3 355 263 50 0 chr13 53308014 53308113 -66436785 + L1ME2 LINE L1 6034 6137 -27 180 176 0 0 chr13 53308579 53308613 -66436285 + L2 LINE L2 3277 3310 -3 198 281 94 16 chr13 53308625 53308689 -66436209 + MIR3 SINE MIR 132 200 -8 195 42 0 0 chr13 53309730 53309754 -66435144 + (TTTTTA)n Simple_repeat Simple_repeat 6 29 0 625 290 6 6 chr13 53309901 53310077 -66434821 + MER5B DNA MER1_type 1 176 -2 23 0 0 0 chr13 53310479 53310502 -66434396 + AT_rich Low_complexity Low_complexity 1 23 0 2708 170 30 48 chr13 53310989 53311553 -66433345 + MLT2B3 LTR ERVL 1 554 0 25 31 0 0 chr13 53311721 53311753 -66433145 + AT_rich Low_complexity Low_complexity 1 32 0 360 0 0 0 chr13 53312023 53312063 -66432835 + (TA)n Simple_repeat Simple_repeat 1 40 0 3252 36 0 0 chr13 53312065 53312450 -66432448 - L1PA5 LINE L1 -7 6147 5763 239 234 104 13 chr13 53312652 53312729 -66432169 + MER102b DNA MER1_type 35 118 -223 658 253 76 22 chr13 53312747 53312972 -66431926 + MER102b DNA MER1_type 93 329 -12 1391 193 51 0 chr13 53313398 53313518 -66431380 + AluJo SINE Alu 1 113 -199 228 67 0 0 chr13 53313518 53313548 -66431350 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1391 193 51 0 chr13 53313548 53313681 -66431217 + AluJo SINE Alu 113 267 -45 198 0 0 0 chr13 53314247 53314269 -66430629 + (T)n Simple_repeat Simple_repeat 1 22 0 197 282 28 42 chr13 53314551 53314622 -66430276 + L2 LINE L2 3203 3272 0 251 243 95 27 chr13 53315090 53315164 -66429734 - L2 LINE L2 -23 3249 3171 309 293 50 56 chr13 53315528 53315726 -66429172 + LTR67 LTR ERVL 359 555 -2 2374 105 0 0 chr13 53316226 53316539 -66428359 + AluSq SINE Alu 1 313 0 2303 175 49 9 chr13 53316785 53317230 -66427668 - MLT1C LTR MaLR -4 463 1 463 307 62 0 chr13 53317386 53317565 -66427333 + MIR SINE MIR 1 190 -72 25 0 0 0 chr13 53317751 53317776 -66427122 + AT_rich Low_complexity Low_complexity 1 25 0 1919 100 82 4 chr13 53318101 53318371 -66426527 - AluSg SINE Alu -19 291 1 23 0 0 0 chr13 53318373 53318396 -66426502 + AT_rich Low_complexity Low_complexity 1 23 0 955 218 38 19 chr13 53321358 53321569 -66423329 + MER58A DNA MER1_type 9 223 -1 184 256 90 13 chr13 53323505 53323583 -66421315 + MIR SINE MIR 166 249 -13 1739 172 0 0 chr13 53325198 53325483 -66419415 - AluJb SINE Alu -22 290 6 34 72 0 0 chr13 53326672 53326741 -66418157 + AT_rich Low_complexity Low_complexity 1 69 0 3191 233 43 15 chr13 53326968 53327844 -66417054 + L1ME1 LINE L1 5261 6161 -5 184 98 0 78 chr13 53330462 53330513 -66414385 + (AGGGGG)n Simple_repeat Simple_repeat 4 50 0 2060 122 3 3 chr13 53330579 53330890 -66414008 + AluSx SINE Alu 1 311 -1 486 0 0 0 chr13 53331036 53331090 -66413808 + (TA)n Simple_repeat Simple_repeat 2 55 0 492 333 72 13 chr13 53331354 53331591 -66413307 + MIR SINE MIR 2 252 -10 345 154 33 0 chr13 53331593 53331684 -66413214 + (TA)n Simple_repeat Simple_repeat 2 95 0 391 287 226 0 chr13 53332207 53332402 -66412496 + MIR SINE MIR 2 240 -22 652 233 129 0 chr13 53335351 53335514 -66409384 + MER5A DNA MER1_type 5 188 -1 643 266 52 47 chr13 53335750 53335830 -66409068 - MIR SINE MIR -27 235 157 3929 135 28 14 chr13 53335830 53336204 -66408694 - L1PA15 LINE L1 0 6165 5777 2385 81 0 0 chr13 53336204 53336502 -66408396 - AluSc SINE Alu -11 298 1 3929 135 28 14 chr13 53336502 53336779 -66408119 - L1PA15 LINE L1 -388 5777 5505 643 266 52 47 chr13 53336779 53336931 -66407967 - MIR SINE MIR -105 157 2 295 323 167 5 chr13 53338214 53338406 -66406492 - MIR SINE MIR -15 247 25 881 305 37 17 chr13 53340621 53341055 -66403843 + MLT1J1 LTR MaLR 8 448 -2 623 178 0 0 chr13 53341057 53341158 -66403740 + AluJ SINE Alu 3 103 -209 2670 194 46 98 chr13 53341164 53341929 -66402969 + MER50 LTR ERV1 10 734 0 232 116 0 47 chr13 53341929 53341968 -66402930 + AluJ SINE Alu 100 136 -166 520 315 25 0 chr13 53341968 53342130 -66402768 + AluJ SINE Alu 137 302 0 594 165 12 35 chr13 53342136 53342306 -66402592 + A-rich Low_complexity Low_complexity 3 168 0 23 0 0 0 chr13 53343734 53343757 -66401141 + AT_rich Low_complexity Low_complexity 1 23 0 574 345 76 20 chr13 53343783 53344177 -66400721 + L2 LINE L2 2430 2845 -469 481 257 103 51 chr13 53345552 53346039 -66398859 + HAL1 LINE L1 951 1462 -1045 470 17 17 0 chr13 53346287 53346346 -66398552 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 207 0 0 0 chr13 53346368 53346391 -66398507 + (TC)n Simple_repeat Simple_repeat 2 24 0 329 102 17 0 chr13 53346486 53346545 -66398353 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 216 67 0 0 chr13 53346617 53346647 -66398251 + (CAA)n Simple_repeat Simple_repeat 2 31 0 270 0 0 0 chr13 53349673 53349703 -66395195 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 195 42 0 0 chr13 53351003 53351027 -66393871 + (CAT)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr13 53351970 53351994 -66392904 + (TA)n Simple_repeat Simple_repeat 2 25 0 487 343 60 41 chr13 53352663 53353028 -66391870 + L2 LINE L2 2489 2860 -454 356 318 142 18 chr13 53353041 53353315 -66391583 + L2 LINE L2 3006 3313 0 463 211 29 29 chr13 53354635 53354739 -66390159 - MER5A DNA MER1_type -77 112 9 209 216 0 0 chr13 53354931 53354968 -66389930 - L2 LINE L2 -22 3250 3214 301 297 29 58 chr13 53355770 53355908 -66388990 - MIR SINE MIR -71 191 58 2259 158 53 12 chr13 53355954 53356365 -66388533 + MSTA LTR MaLR 1 428 0 752 265 126 5 chr13 53356367 53356582 -66388316 - MIR SINE MIR -10 252 12 1574 214 26 0 chr13 53356918 53357222 -66387676 - AluJo SINE Alu 0 312 1 228 224 149 0 chr13 53357698 53357765 -66387133 + LTR50 LTR ERVL 4 80 -715 310 250 119 54 chr13 53357785 53357953 -66386945 + LTR50 LTR ERVL 523 701 -94 263 308 154 35 chr13 53358486 53358655 -66386243 - MIR SINE MIR -66 196 8 21 36 0 0 chr13 53358962 53358990 -66385908 + AT_rich Low_complexity Low_complexity 1 28 0 2149 118 0 10 chr13 53359177 53359491 -66385407 - AluSq SINE Alu 0 313 3 210 268 0 0 chr13 53359876 53359932 -66384966 + A-rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr13 53360874 53360903 -66383995 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 53362098 53362120 -66382778 + AT_rich Low_complexity Low_complexity 1 22 0 378 296 43 21 chr13 53364647 53364833 -66380065 + L1MC4a LINE L1 5721 5910 -1898 693 264 13 63 chr13 53365001 53365240 -66379658 + MER77 LTR ERV1 1 227 -378 1400 263 36 6 chr13 53365332 53365689 -66379209 + MER77 LTR ERV1 236 603 -2 1687 102 188 82 chr13 53365900 53366304 -66378594 + LTR7 LTR ERV1 4 450 0 2647 133 51 0 chr13 53366456 53366869 -66378029 - MER57B LTR ERV1 0 434 1 225 270 148 0 chr13 53366941 53367009 -66377889 - MIR SINE MIR -67 141 72 1468 247 54 17 chr13 53368277 53368783 -66376115 + LTR28 LTR ERV1 1 424 -1 2148 156 31 14 chr13 53369641 53369999 -66374899 + THE1B LTR MaLR 1 364 0 239 280 110 10 chr13 53371452 53371552 -66373346 + MIR SINE MIR 146 255 -7 230 369 47 27 chr13 53371840 53371989 -66372909 - L2 LINE L2 -185 3087 2936 1970 245 73 20 chr13 53372242 53372724 -66372174 - L1ME2 LINE L1 -1 6163 5631 2186 149 8 3 chr13 53372724 53373086 -66371812 + THE1B LTR MaLR 1 364 0 1970 245 73 20 chr13 53373086 53373301 -66371597 - L1ME2 LINE L1 -533 5631 5429 1061 199 8 25 chr13 53373301 53373537 -66371361 - MER39B LTR ERV1 0 653 422 38931 71 20 3 chr13 53373543 53379584 -66365314 + L1PA5 LINE L1 1 6147 -7 1029 25 57 6 chr13 53379593 53379751 -66365147 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 2229 166 42 7 chr13 53379758 53380167 -66364731 - MER39B LTR ERV1 -230 423 1 377 205 262 22 chr13 53380167 53380389 -66364509 - L1ME2 LINE L1 -743 5403 5161 322 248 24 80 chr13 53380486 53380611 -66364287 - L1ME2 LINE L1 -1123 5023 4906 1320 275 50 16 chr13 53380624 53381180 -66363718 - L1ME2 LINE L1 -1296 4850 4276 383 192 48 64 chr13 53381221 53381346 -66363552 - L1ME2 LINE L1 -1946 4200 4078 430 240 10 0 chr13 53381787 53381891 -66363007 + MER70B LTR ERVL 456 560 -18 2122 249 65 75 chr13 53381914 53383403 -66361495 - L1ME2 LINE L1 -2061 4085 2611 254 351 57 18 chr13 53384877 53385040 -66359858 - MIR SINE MIR -69 139 13 23 54 0 0 chr13 53386719 53386756 -66358142 + AT_rich Low_complexity Low_complexity 1 37 0 301 298 39 60 chr13 53387087 53387288 -66357610 + MIR SINE MIR 22 217 -45 438 200 30 20 chr13 53387607 53387707 -66357191 + L2 LINE L2 3212 3312 -1 485 319 84 26 chr13 53388212 53388785 -66356113 - L1MC4a LINE L1 -1899 5909 5304 1042 166 215 12 chr13 53389189 53389436 -66355462 - AluSx SINE Alu -5 297 1 320 324 116 34 chr13 53389516 53389982 -66354916 - L1MC4a LINE L1 -1314 4832 4329 4820 217 25 23 chr13 53390054 53392157 -66352741 - L1MB2 LINE L1 -77 6094 3985 21 0 0 0 chr13 53392185 53392206 -66352692 + AT_rich Low_complexity Low_complexity 1 21 0 303 318 12 12 chr13 53392421 53392594 -66352304 + (TA)n Simple_repeat Simple_repeat 1 173 0 31 58 0 0 chr13 53392749 53392801 -66352097 + AT_rich Low_complexity Low_complexity 1 52 0 406 347 65 44 chr13 53392983 53393441 -66351457 - L1MB2 LINE L1 -3103 3043 2576 235 261 15 0 chr13 53393599 53393664 -66351234 + L1MEd LINE L1 660 725 -5394 1020 261 68 12 chr13 53393725 53394050 -66350848 + L2 LINE L2 2196 2538 -776 386 140 0 0 chr13 53394051 53394108 -66350790 + Tigger2 DNA MER2_type 1 57 -2661 246 224 103 0 chr13 53394122 53394180 -66350718 - MER2 DNA MER2_type -1 344 281 * 683 238 41 17 chr13 53394156 53394328 -66350570 - MER8 DNA MER2_type -62 177 2 1153 307 43 38 chr13 53394339 53395101 -66349797 + L2 LINE L2 2552 3313 0 262 355 137 0 chr13 53395580 53395704 -66349194 + MIR3 SINE MIR 51 191 -17 182 416 26 0 chr13 53397461 53397538 -66347360 - L2 LINE L2 -35 3278 3200 953 228 28 5 chr13 53397706 53397917 -66346981 - MER58A DNA MER1_type -8 216 1 6366 120 31 65 chr13 53398458 53399667 -66345231 - Tigger3b DNA MER2_type 0 1231 65 1165 155 163 47 chr13 53399674 53399932 -66344966 + AluJo SINE Alu 9 296 -16 309 258 0 30 chr13 53399933 53399999 -66344899 - Tigger3b DNA MER2_type -1163 68 5 283 250 150 36 chr13 53400662 53400802 -66344096 + L2 LINE L2 3158 3313 0 435 281 116 18 chr13 53400988 53401152 -66343746 + MIR SINE MIR 9 188 -74 21 0 0 0 chr13 53401302 53401323 -66343575 + AT_rich Low_complexity Low_complexity 1 21 0 1522 47 0 0 chr13 53402610 53402910 -66341988 + L1PA5 LINE L1 5798 6150 -4 183 327 140 0 chr13 53402956 53403063 -66341835 - L2 LINE L2 -229 3084 2963 1915 272 60 43 chr13 53403406 53403634 -66341264 - L1 LINE L1 -769 5377 5154 1963 126 10 7 chr13 53403634 53403927 -66340971 - AluSq SINE Alu -19 294 1 1915 272 60 43 chr13 53403927 53404796 -66340102 - L1 LINE L1 -992 5154 4332 5747 108 21 7 chr13 53406973 53408321 -66336577 + L1PA13 LINE L1 4795 6163 0 251 261 0 0 chr13 53408358 53408427 -66336471 + (TAG)n Simple_repeat Simple_repeat 2 70 0 24 0 0 0 chr13 53408547 53408571 -66336327 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 53409530 53409558 -66335340 + AT_rich Low_complexity Low_complexity 1 28 0 931 134 0 35 chr13 53411381 53411553 -66333345 - L1MC3 LINE L1 0 7785 7620 398 235 157 0 chr13 53411584 53411699 -66333199 - L1MC3 LINE L1 -865 6920 6788 1989 179 174 116 chr13 53411788 53412210 -66332688 - L1MC3 LINE L1 -159 7626 7230 225 247 94 12 chr13 53412210 53412295 -66332603 - MLT1F1 LTR MaLR -434 133 42 1989 179 174 116 chr13 53412295 53412576 -66332322 - L1MC3 LINE L1 -555 7230 6793 1443 262 58 33 chr13 53412626 53413726 -66331172 - L1ME1 LINE L1 -9 6157 4920 886 247 0 5 chr13 53413731 53413917 -66330981 + MLT1A1 LTR MaLR 1 185 -180 229 318 36 27 chr13 53414301 53414411 -66330487 - L2 LINE L2 -8 3264 3154 501 313 96 59 chr13 53415148 53415471 -66329427 + L1MEd LINE L1 905 1239 -4880 1178 245 77 9 chr13 53416116 53416455 -66328443 + MLT1D LTR MaLR 140 501 -4 2064 165 86 8 chr13 53416482 53416877 -66328021 + MSTB LTR MaLR 1 426 0 208 308 0 0 chr13 53417673 53417738 -66327160 - L2 LINE L2 -252 3061 2997 273 432 0 32 chr13 53418330 53418485 -66326413 - L2 LINE L2 -6 3266 3117 28 48 0 0 chr13 53419543 53419585 -66325313 + AT_rich Low_complexity Low_complexity 1 42 0 4786 216 34 17 chr13 53419592 53421365 -66323533 + L1MC1 LINE L1 3799 5614 -719 6980 97 11 2 chr13 53421365 53422325 -66322573 - LTR5 LTR ERVK 0 969 1 4786 216 34 17 chr13 53422325 53422700 -66322198 + L1MC1 LINE L1 5614 5981 -352 2946 50 5 8 chr13 53422700 53423083 -66321815 + LTR7 LTR ERV1 1 382 -68 12362 89 6 7 chr13 53423083 53424821 -66320077 + HERVH LTR ERV1 1251 2987 -4726 899 140 7 0 chr13 53424815 53424965 -66319933 + HERVH LTR ERV1 3140 3290 -4423 * 2270 121 0 9 chr13 53424955 53425302 -66319596 + HERVH LTR ERV1 3492 3835 -3878 319 234 117 0 chr13 53426016 53426110 -66318788 - L2 LINE L2 -4 3309 3205 258 330 11 96 chr13 53426396 53426584 -66318314 - L2 LINE L2 -559 2755 2584 21 0 0 0 chr13 53427373 53427394 -66317504 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr13 53428665 53428704 -66316194 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 507 33 0 0 chr13 53428703 53428764 -66316134 + (TA)n Simple_repeat Simple_repeat 1 61 0 1082 207 8 15 chr13 53430322 53430583 -66314315 + L1M4 LINE L1 2646 2904 -3242 2868 10 0 0 chr13 53431510 53431822 -66313076 + AluYb8 SINE Alu 1 312 -6 34 24 0 0 chr13 53431876 53431917 -66312981 + AT_rich Low_complexity Low_complexity 1 41 0 10543 190 50 26 chr13 53432042 53432880 -66312018 - L1PB3 LINE L1 -2 6209 5392 2504 54 0 0 chr13 53432880 53433175 -66311723 - AluY SINE Alu -16 295 1 10543 190 50 26 chr13 53433175 53435204 -66309694 - L1PB3 LINE L1 -819 5392 3242 188 83 0 28 chr13 53435204 53435240 -66309658 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 10543 190 50 26 chr13 53435240 53435910 -66308988 - L1PB3 LINE L1 -2969 3242 2589 207 0 0 0 chr13 53435912 53435935 -66308963 + (TTA)n Simple_repeat Simple_repeat 2 24 0 26409 142 7 9 chr13 53435939 53442315 -66302583 - L1PA8A LINE L1 -18 6428 5 3497 255 65 33 chr13 53442313 53443484 -66301414 - L1PB3 LINE L1 -3607 2596 1463 * 2048 154 0 0 chr13 53443484 53443789 -66301109 - AluSc SINE Alu -2 307 3 2865 10 0 0 chr13 53443799 53444110 -66300788 - AluYb8 SINE Alu -7 311 1 3497 255 65 33 chr13 53444110 53444705 -66300193 - L1PB3 LINE L1 -4748 1455 771 847 162 7 73 chr13 53444705 53444915 -66299983 - MLT2A2 LTR ERVL 0 453 293 207 139 0 0 chr13 53444933 53444969 -66299929 + (TA)n Simple_repeat Simple_repeat 1 36 0 748 165 0 0 chr13 53444985 53445106 -66299792 - L1P4 LINE L1 -500 5665 5545 6120 163 17 41 chr13 53445106 53445772 -66299126 - L1P4 LINE L1 -555 5610 4929 2231 110 3 3 chr13 53445772 53446082 -66298816 - AluSx SINE Alu -2 310 1 6120 163 17 41 chr13 53446082 53446998 -66297900 - L1P4 LINE L1 -1236 4929 4073 32 67 0 0 chr13 53447042 53447102 -66297796 + AT_rich Low_complexity Low_complexity 1 60 0 24 0 0 0 chr13 53449500 53449524 -66295374 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr13 53450413 53450445 -66294453 + AT_rich Low_complexity Low_complexity 1 32 0 648 288 81 28 chr13 53450676 53450961 -66293937 - LTR33 LTR ERVL -13 508 209 222 380 22 22 chr13 53451203 53451295 -66293603 - MIR SINE MIR -168 94 3 3579 201 19 16 chr13 53451593 53452458 -66292440 - L1 LINE L1 -2521 5044 4174 2258 101 0 3 chr13 53452458 53452755 -66292143 + AluSc SINE Alu 2 297 -12 3579 201 19 16 chr13 53452755 53452778 -66292120 - L1 LINE L1 -3391 4174 4153 * 5355 144 2 2 chr13 53452776 53453632 -66291266 + L1PA15 LINE L1 5310 6165 0 4328 212 42 24 chr13 53453635 53455275 -66289623 - L1 LINE L1 -3398 4167 2491 14433 203 14 6 chr13 53505291 53509579 -66235319 + L1PB1 LINE L1 1479 5791 -360 261 83 0 0 chr13 53509579 53509615 -66235283 + (TA)n Simple_repeat Simple_repeat 2 37 0 14433 203 14 6 chr13 53509615 53509971 -66234927 + L1PB1 LINE L1 5791 6143 -8 862 123 36 0 chr13 53510959 53511097 -66233801 - MER67C LTR ERV1 0 710 568 1509 141 42 157 chr13 53511097 53511480 -66233418 + MER1B DNA MER1_type 1 339 0 1204 164 18 91 chr13 53511482 53511756 -66233142 - MER67C LTR ERV1 -137 573 320 2374 221 39 34 chr13 53511760 53512865 -66232033 - LTR27 LTR ERV1 0 1755 3 1351 225 26 0 chr13 53512865 53513176 -66231722 - MER67C LTR ERV1 -391 319 1 224 303 77 58 chr13 53514866 53515021 -66229877 - MIR SINE MIR -14 248 91 423 340 133 40 chr13 53515093 53515490 -66229408 + L2 LINE L2 2880 3313 0 303 237 119 68 chr13 53516339 53516516 -66228382 + LTR41 LTR ERVL 587 772 -1 189 0 0 0 chr13 53517537 53517558 -66227340 + (GA)n Simple_repeat Simple_repeat 1 21 0 786 316 33 11 chr13 53517661 53517936 -66226962 - MLT1H1 LTR MaLR -100 455 175 916 104 42 7 chr13 53518363 53518507 -66226391 + MSTA LTR MaLR 1 149 -279 335 303 23 8 chr13 53518527 53518659 -66226239 - MLT1H1 LTR MaLR -454 136 3 1063 104 7 0 chr13 53518980 53519124 -66225774 - AluSg/x SINE Alu -12 300 156 1736 113 0 0 chr13 53519129 53519368 -66225530 - AluSq SINE Alu -74 239 1 442 322 0 0 chr13 53520073 53520216 -66224682 - MLT1-int LTR MaLR -830 541 399 1043 279 28 45 chr13 53520411 53520770 -66224128 - MLT1H1 LTR MaLR -8 547 195 2249 94 3 0 chr13 53521130 53521428 -66223470 - AluY SINE Alu -12 299 1 189 121 0 0 chr13 53521950 53521983 -66222915 + (TG)n Simple_repeat Simple_repeat 1 33 0 2964 172 78 17 chr13 53521986 53521998 -66222900 + MER4D LTR ERV1 1 11 -892 207 0 0 0 chr13 53521998 53522021 -66222877 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2964 172 78 17 chr13 53522021 53522652 -66222246 + MER4D LTR ERV1 11 683 -220 1136 237 36 23 chr13 53522668 53523015 -66221883 - LTR43 LTR ERV1 -59 461 195 821 177 146 42 chr13 53523229 53523336 -66221562 + MER4D LTR ERV1 680 774 -129 2416 126 20 3 chr13 53523336 53523694 -66221204 - THE1B LTR MaLR 0 364 1 821 177 146 42 chr13 53523694 53523778 -66221120 + MER4D LTR ERV1 774 891 -12 250 290 97 41 chr13 53524256 53524401 -66220497 + HAL1 LINE L1 349 501 -2006 2043 150 33 31 chr13 53524434 53524793 -66220105 - THE1B LTR MaLR 0 364 5 21 0 0 0 chr13 53525707 53525728 -66219170 + AT_rich Low_complexity Low_complexity 1 21 0 213 310 17 0 chr13 53525754 53525812 -66219086 - L2 LINE L2 -5 3308 3250 1092 223 37 66 chr13 53525895 53526222 -66218676 - MSTD LTR MaLR 0 396 157 2187 73 24 3 chr13 53526222 53526509 -66218389 - AluY SINE Alu -18 293 1 1092 223 37 66 chr13 53526509 53526662 -66218236 - MSTD LTR MaLR -239 157 1 320 310 31 85 chr13 53528987 53529245 -66215653 + MIR SINE MIR 3 246 -16 22 35 0 0 chr13 53529894 53529923 -66214975 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 53530277 53530301 -66214597 + AT_rich Low_complexity Low_complexity 1 24 0 334 286 6 30 chr13 53530937 53530962 -66213936 + (TA)n Simple_repeat Simple_repeat 2 26 -139 297 0 0 0 chr13 53530962 53530995 -66213903 + (CA)n Simple_repeat Simple_repeat 2 34 0 334 286 6 30 chr13 53530995 53531137 -66213761 + (TA)n Simple_repeat Simple_repeat 26 165 0 24 0 0 0 chr13 53531155 53531179 -66213719 + AT_rich Low_complexity Low_complexity 1 24 0 414 349 13 13 chr13 53531660 53531812 -66213086 - MER91A DNA MER1_type -43 153 2 311 250 14 0 chr13 53532805 53532877 -66212021 + U6 snRNA snRNA 4 76 -31 2054 130 6 62 chr13 53532890 53533243 -66211655 + MER1B DNA MER1_type 7 339 0 820 207 57 141 chr13 53536115 53536554 -66208344 - MER31B LTR ERV1 -43 423 22 1693 192 0 10 chr13 53537645 53537942 -66206956 + AluJb SINE Alu 2 295 -17 1931 214 86 8 chr13 53538716 53539193 -66205705 + MLT2B2 LTR ERVL 1 514 -1 2318 164 36 2 chr13 53539636 53540050 -66204848 + MSTA LTR MaLR 1 428 0 336 316 76 51 chr13 53540116 53540353 -66204545 + MIR SINE MIR 20 262 0 225 330 34 17 chr13 53540358 53540476 -66204422 + L2 LINE L2 2700 2819 -495 22 35 0 0 chr13 53540493 53540522 -66204376 + AT_rich Low_complexity Low_complexity 1 29 0 378 221 47 12 chr13 53540731 53540817 -66204081 + L2 LINE L2 3224 3312 -1 195 42 0 0 chr13 53540823 53540847 -66204051 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 180 125 0 0 chr13 53541538 53541570 -66203328 + (GAA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr13 53541839 53541861 -66203037 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr13 53542120 53542155 -66202743 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr13 53542595 53542620 -66202278 + AT_rich Low_complexity Low_complexity 1 25 0 268 359 47 26 chr13 53542703 53542895 -66202003 + L2 LINE L2 2130 2325 -989 2822 98 62 7 chr13 53543103 53543523 -66201375 + MLT2A1 LTR ERVL 1 443 -1 6246 149 59 14 chr13 53543618 53544796 -66200102 - Tigger3b DNA MER2_type 0 1231 1 321 316 84 7 chr13 53545052 53545207 -66199691 - MER69A DNA AcHobo -1 176 10 474 208 10 10 chr13 53545300 53545396 -66199502 - MLT1C LTR MaLR 0 467 372 1574 222 33 18 chr13 53545868 53546201 -66198697 - MLT1A1 LTR MaLR 0 365 28 3716 206 105 34 chr13 53547183 53548593 -66196305 + L1PBa LINE L1 6 1659 -5204 1160 214 55 78 chr13 53548740 53549123 -66195775 - MLT1A2 LTR MaLR 0 374 1 502 299 41 31 chr13 53549152 53549446 -66195452 + HAL1 LINE L1 1915 2211 -296 221 270 0 16 chr13 53549745 53549808 -66195090 + A-rich Low_complexity Low_complexity 4 65 0 190 313 0 16 chr13 53549817 53549881 -66195017 + L2 LINE L2 1362 1424 -1890 338 342 74 90 chr13 53550745 53551370 -66193528 + L2 LINE L2 2257 2871 -443 263 311 48 0 chr13 53551796 53551899 -66192999 - HAL1 LINE L1 -1597 910 803 2113 107 10 10 chr13 53551908 53552208 -66192690 + AluSx SINE Alu 5 304 -8 1302 205 102 84 chr13 53552297 53552745 -66192153 - MLT1D LTR MaLR -10 495 36 2455 70 0 3 chr13 53552745 53553057 -66191841 + AluY SINE Alu 1 311 0 1302 205 102 84 chr13 53553057 53553086 -66191812 - MLT1D LTR MaLR -469 36 9 225 279 47 23 chr13 53553182 53553268 -66191630 - HAL1 LINE L1 -1843 664 577 462 255 43 87 chr13 53553475 53553706 -66191192 - HAL1 LINE L1 -2263 244 24 28 61 0 0 chr13 53554120 53554169 -66190729 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr13 53554608 53554643 -66190255 + AT_rich Low_complexity Low_complexity 1 35 0 690 213 85 6 chr13 53555486 53555650 -66189248 + MER5B DNA MER1_type 1 177 -1 23 0 0 0 chr13 53556368 53556391 -66188507 + AT_rich Low_complexity Low_complexity 1 23 0 280 265 224 7 chr13 53556493 53556640 -66188258 - MIR SINE MIR 0 262 84 585 196 89 0 chr13 53557022 53557134 -66187764 + FLAM_A SINE Alu 1 122 -11 894 178 45 75 chr13 53557338 53557649 -66187249 + MER33 DNA MER1_type 1 302 -22 861 207 98 73 chr13 53557764 53558236 -66186662 - MER39 LTR ERV1 0 707 1 2326 137 11 6 chr13 53558283 53558640 -66186258 - THE1B LTR MaLR 0 364 6 22 0 0 0 chr13 53559735 53559757 -66185141 + AT_rich Low_complexity Low_complexity 1 22 0 3339 160 61 8 chr13 53561193 53561787 -66183111 + MER4D LTR ERV1 1 625 -278 2430 102 18 21 chr13 53561787 53562169 -66182729 + L1MA1 LINE L1 5906 6286 -16 1603 154 4 26 chr13 53562247 53562513 -66182385 + MER4E LTR ERV1 517 776 -3 1406 241 111 29 chr13 53562735 53563093 -66181805 - L1MB5 LINE L1 -2 6172 5751 315 0 0 0 chr13 53563093 53563128 -66181770 + (TG)n Simple_repeat Simple_repeat 2 36 0 1406 241 111 29 chr13 53563128 53563340 -66181558 - L1MB5 LINE L1 -423 5751 5558 969 297 103 44 chr13 53563569 53566129 -66178769 + L1ME3 LINE L1 2351 5211 -1329 256 257 29 9 chr13 53566300 53566405 -66178493 + (TA)n Simple_repeat Simple_repeat 2 108 0 237 70 0 0 chr13 53566471 53566514 -66178384 - L1M4 LINE L1 -846 5300 5258 493 264 159 64 chr13 53566586 53567006 -66177892 + L1ME3 LINE L1 5726 6185 -371 502 243 81 0 chr13 53567043 53567216 -66177682 - L1M4 LINE L1 -2210 3936 3750 594 312 85 7 chr13 53567224 53567506 -66177392 + L1ME3 LINE L1 6229 6532 -24 2005 245 35 53 chr13 53567529 53568129 -66176769 + MER77 LTR ERV1 9 597 -8 985 131 17 0 chr13 53568157 53568332 -66176566 + GA-rich Low_complexity Low_complexity 3 180 0 763 185 8 0 chr13 53568396 53568526 -66176372 + FLAM_A SINE Alu 2 132 -1 704 177 0 7 chr13 53568526 53568673 -66176225 + GA-rich Low_complexity Low_complexity 2 147 0 339 65 0 0 chr13 53568981 53569027 -66175871 + (CA)n Simple_repeat Simple_repeat 1 46 0 919 207 16 0 chr13 53569160 53569348 -66175550 - AluJo SINE Alu -2 310 120 5251 189 63 38 chr13 53569355 53570967 -66173931 - L1PB3 LINE L1 -4 6150 4479 2377 214 11 11 chr13 53570967 53571538 -66173360 + L1PB3 LINE L1 3883 4453 -1693 547 165 16 71 chr13 53571557 53571684 -66173214 - AluJo SINE Alu -189 123 4 315 197 26 26 chr13 53571747 53571823 -66173075 - Tigger2 DNA MER2_type -2641 77 2 189 0 0 0 chr13 53572412 53572433 -66172465 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2126 109 0 10 chr13 53572436 53572730 -66172168 - AluSg SINE Alu -19 291 1 312 403 16 0 chr13 53572770 53572899 -66171999 - L2 LINE L2 -35 3237 3107 932 235 39 0 chr13 53574154 53574358 -66170540 - MER20 DNA MER1_type -7 212 1 901 279 92 45 chr13 53574373 53574842 -66170056 + L1MDb LINE L1 139 629 -5914 * 1831 230 98 29 chr13 53574839 53575536 -66169362 + L1MDb LINE L1 1362 2106 -4434 499 271 93 100 chr13 53576097 53576517 -66168381 + LTR33A LTR ERVL 107 523 0 186 233 17 50 chr13 53576518 53576535 -66168363 - L3b LINE CR1 0 1583 1567 2318 59 3 0 chr13 53576535 53576873 -66168025 + AluY SINE Alu 1 311 0 186 233 17 50 chr13 53576873 53576915 -66167983 - L3b LINE CR1 -16 1567 1526 186 167 0 0 chr13 53577746 53577782 -66167116 + A-rich Low_complexity Low_complexity 1 36 0 315 319 75 65 chr13 53577842 53578385 -66166513 + L2 LINE L2 1565 2113 -1201 2337 74 0 0 chr13 53578670 53578995 -66165903 + AluY SINE Alu 1 311 0 26 30 0 0 chr13 53580511 53580544 -66164354 + AT_rich Low_complexity Low_complexity 1 33 0 1583 224 43 6 chr13 53580659 53581011 -66163887 + MLT1A1 LTR MaLR 1 365 0 2020 144 29 47 chr13 53581500 53581843 -66163055 - THE1C LTR MaLR 0 375 38 2048 128 0 3 chr13 53581843 53582133 -66162765 + AluSx SINE Alu 21 309 -3 2020 144 29 47 chr13 53582133 53582171 -66162727 - THE1C LTR MaLR -337 38 1 1839 257 113 51 chr13 53582850 53583564 -66161334 + L1MDb LINE L1 2517 3185 -3355 1960 113 0 7 chr13 53583564 53583847 -66161051 + AluY SINE Alu 1 281 -30 375 23 0 0 chr13 53583848 53583892 -66161006 + (TA)n Simple_repeat Simple_repeat 1 44 0 1839 257 113 51 chr13 53583892 53584959 -66159939 + L1MDb LINE L1 3184 4351 -2189 226 187 22 55 chr13 53585072 53585163 -66159735 + (TTATA)n Simple_repeat Simple_repeat 4 91 0 231 331 83 32 chr13 53585255 53585412 -66159486 - L3 LINE CR1 -228 1349 1185 2273 97 3 0 chr13 53585941 53586239 -66158659 - AluSx SINE Alu -13 299 1 30 45 0 0 chr13 53586774 53586818 -66158080 + AT_rich Low_complexity Low_complexity 1 44 0 241 314 112 25 chr13 53588490 53588732 -66156166 + L2 LINE L2 1842 2104 -1210 24 32 0 0 chr13 53589057 53589088 -66155810 + AT_rich Low_complexity Low_complexity 1 31 0 454 174 0 0 chr13 53590364 53590450 -66154448 + L1MB1 LINE L1 6083 6168 0 281 26 26 0 chr13 53590502 53590540 -66154358 + (TG)n Simple_repeat Simple_repeat 2 40 0 * 360 0 0 0 chr13 53590539 53590579 -66154319 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 241 269 39 10 chr13 53590630 53590734 -66154164 + (TA)n Simple_repeat Simple_repeat 2 108 0 3251 198 38 16 chr13 53591281 53591917 -66152981 - MER54B LTR ERVL 0 793 144 38 22 0 0 chr13 53591933 53591978 -66152920 + AT_rich Low_complexity Low_complexity 1 45 0 975 119 6 31 chr13 53592022 53592182 -66152716 - MER54B LTR ERVL -637 156 1 255 242 0 0 chr13 53592324 53592386 -66152512 + A-rich Low_complexity Low_complexity 1 62 0 22 0 0 0 chr13 53592731 53592753 -66152145 + AT_rich Low_complexity Low_complexity 1 22 0 2247 100 3 28 chr13 53593347 53593666 -66151232 - AluSx SINE Alu -1 311 1 2504 56 0 0 chr13 53594020 53594326 -66150572 - AluY SINE Alu -5 306 1 28 29 0 0 chr13 53594337 53594372 -66150526 + AT_rich Low_complexity Low_complexity 1 35 0 532 270 112 23 chr13 53597222 53597481 -66147417 - L1MC5 LINE L1 -431 7530 7249 730 266 92 71 chr13 53597494 53598042 -66146856 - L1MC5 LINE L1 -883 7078 6597 1425 235 19 30 chr13 53598095 53598461 -66146437 + MLT1A1 LTR MaLR 4 365 0 292 331 67 44 chr13 53598862 53599388 -66145510 - HAL1b LINE L1 -742 606 69 452 86 52 40 chr13 53599545 53599719 -66145179 + (TA)n Simple_repeat Simple_repeat 1 176 0 33 25 0 0 chr13 53599727 53599767 -66145131 + AT_rich Low_complexity Low_complexity 1 40 0 259 329 0 0 chr13 53599767 53599852 -66145046 - L1ME1 LINE L1 -72 6094 6010 542 216 27 64 chr13 53600525 53600735 -66144163 - L1ME1 LINE L1 -143 6023 5821 612 265 100 71 chr13 53600736 53601045 -66143853 - L2 LINE L2 -8 3305 2988 240 200 70 20 chr13 53601078 53601178 -66143720 - L1ME1 LINE L1 -1741 4405 4301 22 56 0 0 chr13 53601264 53601300 -66143598 + AT_rich Low_complexity Low_complexity 1 36 0 3821 147 5 2 chr13 53601360 53601967 -66142931 - L1PA14 LINE L1 -48 6113 5505 1936 246 21 34 chr13 53602016 53602646 -66142252 - L1ME1 LINE L1 -331 5835 5215 1377 222 104 43 chr13 53602766 53603391 -66141507 - L1ME1 LINE L1 -1633 4513 3851 28 0 0 0 chr13 53603444 53603472 -66141426 + AT_rich Low_complexity Low_complexity 1 28 0 300 27 0 0 chr13 53604024 53604061 -66140837 + (TG)n Simple_repeat Simple_repeat 2 38 0 2373 141 40 31 chr13 53604148 53604573 -66140325 - L1PA16 LINE L1 -9 6157 5729 1159 120 0 0 chr13 53604574 53604749 -66140149 + L1PA16 LINE L1 5551 5725 -441 230 343 80 23 chr13 53604758 53604933 -66139965 + L2 LINE L2 3013 3197 -116 1942 141 0 10 chr13 53606464 53606762 -66138136 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr13 53608106 53608135 -66136763 + AT_rich Low_complexity Low_complexity 1 29 0 293 360 38 42 chr13 53610001 53610237 -66134661 - L2 LINE L2 -872 2442 2208 193 351 81 56 chr13 53610265 53610550 -66134348 - L2 LINE L2 -1184 2130 1839 2375 134 13 5 chr13 53610801 53611173 -66133725 - THE1C LTR MaLR 0 375 1 8407 131 45 66 chr13 53611173 53612585 -66132313 - THE1C-int LTR MaLR 0 1580 204 1997 155 3 0 chr13 53612585 53612894 -66132004 - AluSx SINE Alu -2 310 1 8407 131 45 66 chr13 53612894 53613094 -66131804 - THE1C-int LTR MaLR -1376 204 1 2342 103 60 0 chr13 53613094 53613444 -66131454 - THE1C LTR MaLR 0 375 5 25 0 0 0 chr13 53614164 53614189 -66130709 + AT_rich Low_complexity Low_complexity 1 25 0 1953 145 116 0 chr13 53614697 53615069 -66129829 + L1PA13 LINE L1 5749 6163 0 726 150 20 13 chr13 53616039 53616192 -66128706 + CT-rich Low_complexity Low_complexity 1 154 0 199 114 0 91 chr13 53616792 53616836 -66128062 - L2 LINE L2 0 3313 3274 27 0 0 0 chr13 53617393 53617420 -66127478 + AT_rich Low_complexity Low_complexity 1 27 0 2826 7 0 0 chr13 53618740 53619050 -66125848 - AluYa5 SINE Alu -1 310 1 718 276 104 5 chr13 53619491 53619712 -66125186 + MIR SINE MIR 6 248 -14 1369 296 54 28 chr13 53619862 53620396 -66124502 + MLT1H1 LTR MaLR 1 548 -7 1866 151 83 14 chr13 53620448 53620799 -66124099 + THE1C LTR MaLR 1 375 0 372 316 0 0 chr13 53621140 53621298 -66123600 + (TATATG)n Simple_repeat Simple_repeat 5 162 0 216 0 0 0 chr13 53621595 53621619 -66123279 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 366 23 0 0 chr13 53622553 53622596 -66122302 + (TG)n Simple_repeat Simple_repeat 2 44 0 258 200 0 18 chr13 53622616 53622671 -66122227 + GA-rich Low_complexity Low_complexity 2 55 0 1736 179 30 0 chr13 53623487 53623783 -66121115 + AluSx SINE Alu 1 305 -7 2051 213 129 6 chr13 53623920 53624423 -66120475 - MER70B LTR ERVL -9 569 5 320 311 76 8 chr13 53624757 53624889 -66120009 + MER5A DNA MER1_type 43 183 -6 304 283 24 24 chr13 53625534 53625700 -66119198 + (TG)n Simple_repeat Simple_repeat 2 167 0 1106 194 5 22 chr13 53627387 53627609 -66117289 + AluJb SINE Alu 87 304 -8 21 0 0 0 chr13 53627639 53627660 -66117238 + AT_rich Low_complexity Low_complexity 1 21 0 1154 232 54 14 chr13 53627903 53628200 -66116698 + MLT1E1 LTR MaLR 1 309 -345 521 186 8 0 chr13 53628211 53628340 -66116558 + GA-rich Low_complexity Low_complexity 1 130 0 568 230 44 96 chr13 53628348 53628558 -66116340 + MLT1E3 LTR MaLR 207 447 -177 642 255 79 5 chr13 53628581 53628797 -66116101 - L1MEc LINE L1 -3994 2402 2171 728 188 50 17 chr13 53628813 53628994 -66115904 - L1MB2 LINE L1 0 6171 5985 371 336 38 21 chr13 53629058 53629296 -66115602 - L1MEc LINE L1 -6132 264 23 195 42 0 0 chr13 53629838 53629862 -66115036 + (TG)n Simple_repeat Simple_repeat 1 24 0 284 102 20 0 chr13 53629862 53629911 -66114987 + (GA)n Simple_repeat Simple_repeat 2 51 0 338 363 21 32 chr13 53630201 53630339 -66114559 - L2 LINE L2 -417 2897 2760 2259 86 10 13 chr13 53630339 53630640 -66114258 + AluY SINE Alu 1 300 -11 338 363 21 32 chr13 53630640 53630691 -66114207 - L2 LINE L2 -554 2760 2710 527 338 15 0 chr13 53630756 53630954 -66113944 - L2 LINE L2 -798 2516 2316 846 248 125 20 chr13 53631010 53631462 -66113436 - MLT1E LTR MaLR 0 593 1 264 300 50 10 chr13 53632529 53632629 -66112269 + LOR1-int LTR ERV1 6404 6507 -1613 21 0 0 0 chr13 53633567 53633588 -66111310 + AT_rich Low_complexity Low_complexity 1 21 0 3861 167 127 28 chr13 53633946 53634779 -66110119 - MER21A LTR ERV1 0 931 16 240 238 0 0 chr13 53634781 53634844 -66110054 + (TA)n Simple_repeat Simple_repeat 1 63 0 237 65 0 0 chr13 53637348 53637379 -66107519 + (TG)n Simple_repeat Simple_repeat 2 32 0 2619 20 7 3 chr13 53637595 53637901 -66106997 + AluY SINE Alu 1 307 -4 33 25 0 0 chr13 53638253 53638293 -66106605 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 53638453 53638474 -66106424 + AT_rich Low_complexity Low_complexity 1 21 0 317 321 9 0 chr13 53639389 53639501 -66105397 + (TG)n Simple_repeat Simple_repeat 1 113 0 21 0 0 0 chr13 53639564 53639585 -66105313 + AT_rich Low_complexity Low_complexity 1 21 0 706 240 0 0 chr13 53640015 53640161 -66104737 + FRAM SINE Alu 15 160 -16 22 56 0 0 chr13 53640569 53640605 -66104293 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 53640901 53640922 -66103976 + AT_rich Low_complexity Low_complexity 1 21 0 1225 188 11 15 chr13 53641098 53641364 -66103534 - L1MB7 LINE L1 -18 6166 5902 2103 107 0 0 chr13 53642636 53642944 -66101954 - AluSg1 SINE Alu 0 308 1 1728 127 44 29 chr13 53643705 53644010 -66100888 - AluSx SINE Alu 0 311 3 241 322 70 9 chr13 53644103 53644218 -66100680 + L3 LINE CR1 1442 1563 -14 250 281 10 10 chr13 53645498 53645594 -66099304 - L1MB7 LINE L1 -276 5845 5750 1513 177 7 40 chr13 53645603 53645903 -66098995 - AluJb SINE Alu -17 295 6 657 173 8 0 chr13 53645910 53646037 -66098861 - FRAM SINE Alu 0 40 1 237 250 42 8 chr13 53646315 53646435 -66098463 + (TA)n Simple_repeat Simple_repeat 2 125 0 884 258 45 38 chr13 53646728 53646992 -66097906 - LTR40a LTR ERVL 0 519 254 513 73 0 0 chr13 53647010 53647078 -66097820 - MADE1 DNA Mariner -1 79 12 * 544 253 122 35 chr13 53647060 53647289 -66097609 - LTR40a LTR ERVL -270 249 1 350 238 82 49 chr13 53647289 53647411 -66097487 - MIR SINE MIR -125 137 12 263 295 49 33 chr13 53647941 53648063 -66096835 - L3 LINE CR1 -820 757 634 1084 183 5 0 chr13 53648065 53648262 -66096636 + L1PB1 LINE L1 3 200 -6663 * 13941 204 42 23 chr13 53648250 53650176 -66094722 + L1PB1 LINE L1 621 2510 -4408 180 0 0 0 chr13 53650176 53650196 -66094702 + (TAA)n Simple_repeat Simple_repeat 2 21 0 13941 204 42 23 chr13 53650196 53652520 -66092378 + L1PB1 LINE L1 2510 5151 -1767 254 29 29 0 chr13 53652520 53652555 -66092343 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 13941 204 42 23 chr13 53652555 53654357 -66090541 + L1PB1 LINE L1 5151 6918 0 30 59 0 0 chr13 53654489 53654540 -66090358 + AT_rich Low_complexity Low_complexity 1 51 0 205 409 108 16 chr13 53655212 53655535 -66089363 - L3 LINE CR1 -989 588 236 300 222 0 0 chr13 53655726 53655798 -66089100 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 3020 94 7 7 chr13 53656274 53656722 -66088176 + LTR7 LTR ERV1 1 448 -2 236 81 81 0 chr13 53656827 53656864 -66088034 + MADE1 DNA Mariner 41 80 0 188 238 16 0 chr13 53656924 53656987 -66087911 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 219 356 132 21 chr13 53657964 53658388 -66086510 - L2 LINE L2 -1299 2015 1545 1717 169 146 13 chr13 53658460 53658838 -66086060 + MSTA LTR MaLR 1 428 0 8284 151 24 47 chr13 53658840 53660454 -66084444 + MSTA-int LTR MaLR 3 1580 0 1411 199 162 8 chr13 53660454 53660825 -66084073 + MSTA LTR MaLR 1 428 0 355 303 67 25 chr13 53661305 53661424 -66083474 + L2 LINE L2 236 359 -2955 1553 244 73 59 chr13 53661459 53662086 -66082812 + L1M3e LINE L1 821 1456 -5574 413 274 18 0 chr13 53662096 53662209 -66082689 - L1M3e LINE L1 -6236 794 680 345 224 26 0 chr13 53662205 53662281 -66082617 + L1M3e LINE L1 286 363 -6667 * 717 218 6 0 chr13 53662286 53662451 -66082447 + L1M3e LINE L1 3181 3346 -3760 1569 151 41 33 chr13 53662495 53662860 -66082038 + L1MA8 LINE L1 5911 6278 -13 524 336 89 33 chr13 53662873 53663233 -66081665 + L2 LINE L2 1407 1786 -1528 824 292 23 11 chr13 53663234 53663498 -66081400 - LTR16B LTR ERVL -7 457 191 2405 257 96 34 chr13 53663545 53665827 -66079071 - L1M4 LINE L1 -3092 2878 367 457 342 24 62 chr13 53665892 53666263 -66078635 - L1M4 LINE L1 -5526 365 9 514 338 33 42 chr13 53666263 53666594 -66078304 + L2 LINE L2 1823 2150 -1164 559 220 8 30 chr13 53667033 53667165 -66077733 - MER94 DNA DNA -3 131 3 249 312 108 45 chr13 53667200 53667514 -66077384 - L2 LINE L2 -1244 2070 1737 2496 69 0 0 chr13 53668716 53669021 -66075877 - AluY SINE Alu -6 305 1 27 29 0 0 chr13 53669317 53669351 -66075547 + AT_rich Low_complexity Low_complexity 1 34 0 228 135 0 0 chr13 53669520 53669557 -66075341 + (TG)n Simple_repeat Simple_repeat 2 38 0 382 341 106 66 chr13 53669770 53670166 -66074732 - L2 LINE L2 -2506 808 384 2510 68 0 0 chr13 53670166 53670477 -66074421 - AluY SINE Alu 0 311 1 382 341 106 66 chr13 53670477 53670611 -66074287 - L2 LINE L2 -2930 384 257 248 307 13 13 chr13 53670701 53670776 -66074122 + L2 LINE L2 3238 3312 -1 24 53 0 0 chr13 53671487 53671525 -66073373 + AT_rich Low_complexity Low_complexity 1 38 0 180 378 178 7 chr13 53671596 53671731 -66073167 - MIR3 SINE MIR -28 180 23 1155 266 114 47 chr13 53672617 53673276 -66071622 - L1MC4a LINE L1 -1823 5985 5283 285 288 116 10 chr13 53673652 53673850 -66071048 - L1MC4a LINE L1 -1298 4848 4630 25 0 0 0 chr13 53673875 53673900 -66070998 + AT_rich Low_complexity Low_complexity 1 25 0 400 276 29 0 chr13 53674198 53674303 -66070595 + MIR SINE MIR 66 173 -89 238 157 14 57 chr13 53674345 53674415 -66070483 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 386 257 40 26 chr13 53675718 53675870 -66069028 + L1MA8 LINE L1 4706 4859 -1287 21 0 0 0 chr13 53675881 53675902 -66068996 + AT_rich Low_complexity Low_complexity 1 21 0 341 308 43 0 chr13 53676117 53676234 -66068664 - MIR SINE MIR -93 169 48 1138 154 0 5 chr13 53676554 53676749 -66068149 - L1PA13 LINE L1 0 6163 5970 5516 166 29 9 chr13 53676749 53678152 -66066746 + L1MA8 LINE L1 4851 6280 -11 556 142 0 121 chr13 53678440 53678581 -66066317 - FLAM_C SINE Alu -9 124 1 205 291 85 48 chr13 53679431 53679596 -66065302 - MIR SINE MIR -26 236 66 1962 127 7 0 chr13 53679648 53679932 -66064966 + AluSg SINE Alu 1 286 -24 216 0 0 0 chr13 53679936 53679960 -66064938 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr13 53680390 53680419 -66064479 + (T)n Simple_repeat Simple_repeat 1 29 0 427 330 22 11 chr13 53680428 53680610 -66064288 + MIR SINE MIR 77 260 -2 1805 267 73 13 chr13 53680713 53681308 -66063590 + MLT1E2 LTR MaLR 1 624 -2 216 0 0 0 chr13 53681636 53681660 -66063238 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 1510 197 93 48 chr13 53682021 53682241 -66062657 - MER67C LTR ERV1 -4 510 302 1363 83 0 10 chr13 53682241 53682434 -66062464 - L1PA5 LINE L1 -3 6151 5961 1510 197 93 48 chr13 53682434 53682764 -66062134 - MER67C LTR ERV1 -212 302 1 256 259 49 0 chr13 53683560 53683641 -66061257 + MIR SINE MIR 132 216 -46 247 291 142 30 chr13 53684937 53685071 -66059827 + L2 LINE L2 3118 3266 -47 463 360 68 0 chr13 53685239 53685475 -66059423 + MIR SINE MIR 5 256 -6 30 45 0 0 chr13 53685575 53685619 -66059279 + AT_rich Low_complexity Low_complexity 1 44 0 960 283 159 25 chr13 53685737 53686343 -66058555 - L1ME3A LINE L1 -4 6166 5472 209 271 0 0 chr13 53688205 53688253 -66056645 + (TG)n Simple_repeat Simple_repeat 1 48 0 422 348 61 71 chr13 53688812 53689223 -66055675 - L2 LINE L2 0 3272 2866 2032 88 56 7 chr13 53691487 53691772 -66053126 + AluSg1 SINE Alu 1 299 -10 397 365 105 40 chr13 53692495 53692925 -66051973 + L2 LINE L2 2378 2835 -479 37 0 0 0 chr13 53693112 53693149 -66051749 + AT_rich Low_complexity Low_complexity 1 37 0 630 84 28 0 chr13 53693508 53693615 -66051283 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 1192 255 15 7 chr13 53693617 53693888 -66051010 - AluJb SINE Alu -39 273 1 405 310 92 41 chr13 53693909 53694302 -66050596 - L1ME3A LINE L1 -1451 4695 4283 397 263 95 15 chr13 53694422 53694572 -66050326 - MIR SINE MIR -63 145 35 23 0 0 0 chr13 53695630 53695653 -66049245 + AT_rich Low_complexity Low_complexity 1 23 0 517 239 122 10 chr13 53696545 53696750 -66048148 - L1ME3A LINE L1 -214 5956 5729 190 127 14 56 chr13 53696826 53696897 -66048001 + (TA)n Simple_repeat Simple_repeat 1 68 0 382 296 93 18 chr13 53696970 53697196 -66047702 - L1ME3A LINE L1 -1988 5820 5578 261 0 0 0 chr13 53697656 53697685 -66047213 + (A)n Simple_repeat Simple_repeat 1 29 0 29 47 0 0 chr13 53702324 53702367 -66042531 + AT_rich Low_complexity Low_complexity 1 43 0 1048 238 0 4 chr13 53702518 53702762 -66042136 - L1MC3 LINE L1 -8 8057 7815 2408 242 36 38 chr13 53702769 53703748 -66041150 - L1MC3 LINE L1 -887 7178 887 1064 180 13 9 chr13 53703737 53703970 -66040928 + L1MB2 LINE L1 4964 5197 -949 * 1878 201 20 29 chr13 53703973 53704416 -66040482 + L1MB2 LINE L1 5688 6126 -45 1600 192 0 17 chr13 53704416 53704708 -66040190 + AluJo SINE Alu 1 287 -25 2360 262 69 45 chr13 53704721 53706558 -66038340 + L1MB7 LINE L1 4283 6184 0 2406 78 3 0 chr13 53706865 53707174 -66037724 - AluY SINE Alu -1 310 1 249 83 0 0 chr13 53707267 53707303 -66037595 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 * 365 95 16 0 chr13 53707302 53707365 -66037533 + (TC)n Simple_repeat Simple_repeat 1 64 0 1676 188 0 10 chr13 53707365 53707673 -66037225 - AluJb SINE Alu -7 305 1 333 0 0 0 chr13 53707981 53708018 -66036880 + (TG)n Simple_repeat Simple_repeat 2 38 0 320 215 13 0 chr13 53708286 53708365 -66036533 + MER116 DNA Mariner 1 80 0 25 65 0 0 chr13 53708538 53708584 -66036314 + AT_rich Low_complexity Low_complexity 1 46 0 373 315 42 32 chr13 53708984 53709200 -66035698 + L1MEd LINE L1 562 779 -5340 420 294 108 13 chr13 53709827 53710058 -66034840 + L1MEd LINE L1 2171 2423 -3706 362 260 82 25 chr13 53710088 53710407 -66034491 + L1MEd LINE L1 2877 3213 -2916 1672 154 0 18 chr13 53710781 53711053 -66033845 + AluSx SINE Alu 34 300 -12 25 0 0 0 chr13 53711090 53711115 -66033783 + AT_rich Low_complexity Low_complexity 1 25 0 188 35 35 0 chr13 53711130 53711159 -66033739 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 201 138 0 0 chr13 53711246 53711275 -66033623 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 338 292 46 46 chr13 53711317 53711557 -66033341 + L1MEd LINE L1 3865 4104 -2025 201 261 17 17 chr13 53712581 53712700 -66032198 + (TA)n Simple_repeat Simple_repeat 1 119 0 23 0 0 0 chr13 53712956 53712979 -66031919 + AT_rich Low_complexity Low_complexity 1 23 0 3047 164 79 23 chr13 53713182 53714044 -66030854 - L1MCa LINE L1 -4531 1895 888 204 40 0 0 chr13 53714044 53714069 -66030829 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 5751 181 14 6 chr13 53714070 53716191 -66028707 - L1PB2 LINE L1 -8 6143 4004 1196 152 17 104 chr13 53716186 53716475 -66028423 - L1MCa LINE L1 -5543 883 620 * 22 0 0 0 chr13 53717076 53717098 -66027800 + AT_rich Low_complexity Low_complexity 1 22 0 2430 61 3 0 chr13 53717098 53717394 -66027504 - AluY SINE Alu -14 297 1 24 0 0 0 chr13 53717572 53717596 -66027302 + AT_rich Low_complexity Low_complexity 1 24 0 5770 108 18 13 chr13 53718058 53719455 -66025443 + L1PA14 LINE L1 4758 6161 0 1518 285 30 52 chr13 53719575 53720165 -66024733 + MLT1E LTR MaLR 9 585 -8 1948 141 58 0 chr13 53720746 53721072 -66023826 - MER7A DNA MER2_type -1 345 3 491 272 37 0 chr13 53722069 53722205 -66022693 + MIR SINE MIR 122 262 0 258 123 31 77 chr13 53722240 53722305 -66022593 + MSTC LTR MaLR 1 62 -366 190 280 120 40 chr13 53722326 53722451 -66022447 + MIR SINE MIR 78 212 -50 318 282 47 0 chr13 53722685 53722770 -66022128 - L1MC4 LINE L1 -1339 6703 6615 2473 49 0 7 chr13 53722772 53723078 -66021820 - AluY SINE Alu -7 304 1 2010 107 34 0 chr13 53723179 53723470 -66021428 - AluY SINE Alu -10 301 1 2074 124 3 0 chr13 53723500 53723798 -66021100 - AluSx SINE Alu -12 300 2 281 111 0 0 chr13 53724339 53724384 -66020514 - L1MA2 LINE L1 0 6304 6260 239 205 26 51 chr13 53724868 53724946 -66019952 + GA-rich Low_complexity Low_complexity 4 79 0 27 73 0 0 chr13 53727525 53727580 -66017318 + AT_rich Low_complexity Low_complexity 1 55 0 629 288 40 26 chr13 53728512 53728738 -66016160 + MLT1J LTR MaLR 237 465 -46 354 367 19 13 chr13 53731248 53731406 -66013492 - L2 LINE L2 -260 3053 2895 1550 203 4 14 chr13 53732189 53732470 -66012428 - MER1B DNA MER1_type -61 278 1 970 294 96 21 chr13 53732488 53732872 -66012026 - L2 LINE L2 -798 2516 2104 597 342 163 52 chr13 53732872 53733665 -66011233 - L2 LINE L2 -2355 959 79 6178 43 145 14 chr13 53733751 53734638 -66010260 + L1P LINE L1 2 1005 -5141 1938 141 0 0 chr13 53734670 53734960 -66009938 + AluSx SINE Alu 2 291 -21 24 0 0 0 chr13 53735961 53735985 -66008913 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr13 53736915 53736950 -66007948 + AT_rich Low_complexity Low_complexity 1 35 0 2158 119 0 0 chr13 53737490 53737785 -66007113 - AluSc SINE Alu -14 295 1 508 324 85 52 chr13 53738265 53738609 -66006289 + L1MEd LINE L1 915 1246 -1244 2078 114 4 0 chr13 53738609 53738933 -66005965 + AluSp SINE Alu 4 328 0 508 324 85 52 chr13 53738933 53739171 -66005727 + L1MEd LINE L1 1246 1597 -893 319 287 50 99 chr13 53739893 53740196 -66004702 - L2 LINE L2 0 3313 3026 241 250 0 0 chr13 53740659 53740703 -66004195 - MER2 DNA MER2_type 0 345 302 397 232 12 0 chr13 53740743 53740825 -66004073 - MER8 DNA MER2_type -150 89 7 407 305 75 32 chr13 53741001 53741188 -66003710 - LTR33 LTR ERVL -310 211 17 324 70 0 0 chr13 53741196 53741239 -66003659 + (CA)n Simple_repeat Simple_repeat 2 44 0 218 32 32 0 chr13 53741240 53741271 -66003627 + (TA)n Simple_repeat Simple_repeat 2 33 0 1590 168 47 50 chr13 53741463 53741803 -66003095 - MER44D DNA MER2_type 0 609 1 2093 125 0 7 chr13 53741901 53742198 -66002700 + AluSg SINE Alu 1 295 -15 24 32 0 0 chr13 53742391 53742422 -66002476 + AT_rich Low_complexity Low_complexity 1 31 0 275 319 0 11 chr13 53742569 53742660 -66002238 - MIR SINE MIR -108 154 65 546 262 85 0 chr13 53742672 53742836 -66002062 + MIR SINE MIR 12 189 -73 972 328 78 15 chr13 53742859 53743256 -66001642 + MLT1G1 LTR MaLR 1 422 -173 1495 213 17 7 chr13 53743379 53743680 -66001218 - AluJb SINE Alu -8 304 1 313 47 0 23 chr13 53743924 53743967 -66000931 + U2 snRNA snRNA 1 42 -146 393 268 47 37 chr13 53743982 53744172 -66000726 + MLT1-int LTR MaLR 350 541 -830 343 361 22 11 chr13 53744446 53744626 -66000272 + MLT1-int LTR MaLR 692 873 -498 26 0 0 0 chr13 53744626 53744652 -66000246 + AT_rich Low_complexity Low_complexity 1 26 0 2258 172 52 0 chr13 53744903 53745310 -65999588 + MSTA LTR MaLR 1 428 0 818 267 84 15 chr13 53745543 53746068 -65998830 + MLT1G3 LTR MaLR 1 595 0 193 189 0 0 chr13 53746072 53746109 -65998789 + MIR SINE MIR 226 262 0 30 27 0 0 chr13 53746156 53746193 -65998705 + AT_rich Low_complexity Low_complexity 1 37 0 1924 133 68 11 chr13 53746347 53746700 -65998198 + THE1C LTR MaLR 3 375 0 413 308 0 8 chr13 53746819 53746939 -65997959 + L2 LINE L2 3192 3310 -3 281 366 32 0 chr13 53746996 53747089 -65997809 - MIR3 SINE MIR -26 182 87 252 0 0 0 chr13 53748174 53748202 -65996696 + (TG)n Simple_repeat Simple_repeat 1 28 0 280 265 15 0 chr13 53748401 53748469 -65996429 - L2 LINE L2 -8 3305 3237 277 308 30 38 chr13 53748978 53749111 -65995787 - L2 LINE L2 -1466 1848 1717 229 255 0 0 chr13 53749112 53749163 -65995735 + (CA)n Simple_repeat Simple_repeat 2 52 0 279 236 0 28 chr13 53749418 53749490 -65995408 + CT-rich Low_complexity Low_complexity 4 73 0 1670 177 10 3 chr13 53751522 53751821 -65993077 - AluJo SINE Alu -1 311 11 25 0 0 0 chr13 53751832 53751857 -65993041 + AT_rich Low_complexity Low_complexity 1 25 0 43 20 0 0 chr13 53752014 53752064 -65992834 + AT_rich Low_complexity Low_complexity 1 50 0 292 300 83 105 chr13 53752505 53752826 -65992072 - L3 LINE CR1 -4 1573 1260 608 213 5 56 chr13 53752826 53753023 -65991875 + MER53 DNA DNA 1 187 -2 292 300 83 105 chr13 53753023 53753074 -65991824 - L3 LINE CR1 -317 1260 1209 22 0 0 0 chr13 53753650 53753672 -65991226 + AT_rich Low_complexity Low_complexity 1 22 0 7478 248 74 29 chr13 53754059 53756048 -65988850 + L1PA15 LINE L1 2 1901 -4896 2059 57 7 18 chr13 53756048 53756329 -65988569 + L1PA8 LINE L1 5895 6172 0 7478 248 74 29 chr13 53756329 53758127 -65986771 + L1PA15 LINE L1 1901 3992 -2805 5505 133 11 18 chr13 53758145 53759910 -65984988 + L1PA15 LINE L1 5053 6812 -4 24 32 0 0 chr13 53759936 53759967 -65984931 + AT_rich Low_complexity Low_complexity 1 31 0 1521 198 116 56 chr13 53760820 53761305 -65983593 - MER67D LTR ERV1 0 514 1 2021 121 3 0 chr13 53761485 53761775 -65983123 - AluSp SINE Alu -22 291 1 356 167 30 0 chr13 53762220 53762286 -65982612 - MIR SINE MIR -113 149 82 9992 93 3 1 chr13 53762714 53764111 -65980787 + L1PA7 LINE L1 3872 5271 -875 6807 54 9 2 chr13 53764212 53765080 -65979818 + L1PA7 LINE L1 5281 6154 0 365 223 46 61 chr13 53765398 53765537 -65979361 + MSTB LTR MaLR 1 203 -223 1780 172 7 0 chr13 53765537 53765827 -65979071 - AluSx SINE Alu -20 292 1 365 223 46 61 chr13 53765827 53765876 -65979022 + MSTB LTR MaLR 203 251 -175 662 181 0 192 chr13 53766370 53766641 -65978257 + MER20 DNA MER1_type 1 219 0 1742 186 3 3 chr13 53767109 53767416 -65977482 + AluSx SINE Alu 1 307 -5 306 0 0 0 chr13 53767576 53767610 -65977288 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr13 53769665 53769687 -65975211 + AT_rich Low_complexity Low_complexity 1 22 0 225 298 7 33 chr13 53770243 53770394 -65974504 + T-rich Low_complexity Low_complexity 4 150 0 24 0 0 0 chr13 53770437 53770461 -65974437 + AT_rich Low_complexity Low_complexity 1 24 0 325 273 61 59 chr13 53770995 53771440 -65973458 - L1MEd LINE L1 -1026 1979 1440 24 0 0 0 chr13 53772043 53772067 -65972831 + AT_rich Low_complexity Low_complexity 1 24 0 2538 167 71 24 chr13 53772403 53772936 -65971962 + L1MC1 LINE L1 5776 6333 0 841 261 73 67 chr13 53773055 53773412 -65971486 + LTR16A1 LTR ERVL 81 439 -18 221 230 30 10 chr13 53773784 53773884 -65971014 + (TA)n Simple_repeat Simple_repeat 1 102 0 * 238 152 61 0 chr13 53773820 53773886 -65971012 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 1413 152 0 0 chr13 53773887 53774091 -65970807 - AluSx SINE Alu -108 204 1 23 0 0 0 chr13 53774357 53774380 -65970518 + AT_rich Low_complexity Low_complexity 1 23 0 2089 122 0 0 chr13 53774427 53774721 -65970177 - AluSq SINE Alu -19 294 1 197 241 101 0 chr13 53777223 53777302 -65967596 - L3b LINE CR1 -204 1379 1293 298 275 148 7 chr13 53777393 53777542 -65967356 + L2 LINE L2 2188 2357 -957 339 331 56 94 chr13 53777731 53778211 -65966687 + L2 LINE L2 2809 3270 -2 250 208 19 0 chr13 53778433 53778486 -65966412 - L2 LINE L2 -5 3308 3255 25 51 0 0 chr13 53778685 53778724 -65966174 + AT_rich Low_complexity Low_complexity 1 39 0 747 156 0 8 chr13 53778935 53779057 -65965841 - L1M4 LINE L1 -526 5648 5528 7030 257 50 13 chr13 53779067 53781522 -65963376 - L1M4 LINE L1 -793 5353 2809 1777 262 45 107 chr13 53781500 53781766 -65963132 - L1M4 LINE L1 -5124 1418 1137 * 495 80 13 13 chr13 53781766 53781841 -65963057 - MADE1 DNA Mariner -5 75 1 1777 262 45 107 chr13 53781841 53783026 -65961872 - L1M4 LINE L1 -5405 1137 5 203 355 110 82 chr13 53783399 53783717 -65961181 - L2 LINE L2 -13 3259 2933 223 344 99 32 chr13 53784077 53784298 -65960600 + L2 LINE L2 2241 2476 -838 22 35 0 0 chr13 53784507 53784536 -65960362 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 53784713 53784743 -65960155 + AT_rich Low_complexity Low_complexity 1 30 0 237 368 60 26 chr13 53786497 53786614 -65958284 + MIR3 SINE MIR 81 201 -7 363 293 67 13 chr13 53786775 53786944 -65957954 + MIR SINE MIR 4 184 -62 874 284 124 34 chr13 53787268 53787705 -65957193 - L2 LINE L2 -5 3308 2833 180 274 321 0 chr13 53787751 53787835 -65957063 - L2 LINE L2 -1075 2239 2129 218 341 70 47 chr13 53787912 53788096 -65956802 - MIR3 SINE MIR -43 165 4 1672 25 5 0 chr13 53788264 53788464 -65956434 + L1PA5 LINE L1 5946 6146 -8 2251 222 26 21 chr13 53789206 53789675 -65955223 - MLT2B3 LTR ERVL 0 554 84 1594 167 46 101 chr13 53789945 53790471 -65954427 + LTR54B LTR ERV1 1 497 -1 213 375 42 0 chr13 53790511 53790583 -65954315 - MER5A DNA MER1_type -72 117 43 * 222 323 16 0 chr13 53790538 53790600 -65954298 + MER5A DNA MER1_type 114 176 -13 23 78 0 0 chr13 53790663 53790714 -65954184 + AT_rich Low_complexity Low_complexity 1 51 0 324 247 108 0 chr13 53790890 53790983 -65953915 - L2 LINE L2 -15 3298 3196 363 230 161 0 chr13 53791049 53791136 -65953762 - MER5A DNA MER1_type -85 104 4 275 206 75 28 chr13 53791798 53791905 -65952993 + L1MA8 LINE L1 6175 6286 -5 21 36 0 0 chr13 53791906 53791934 -65952964 + AT_rich Low_complexity Low_complexity 1 28 0 1608 215 36 15 chr13 53792125 53792516 -65952382 - MER63B DNA MER1_type -36 400 2 183 217 12 24 chr13 53793953 53794036 -65950862 + GA-rich Low_complexity Low_complexity 3 84 0 186 306 121 16 chr13 53794842 53794966 -65949932 - MIR SINE MIR -56 152 16 2189 190 29 94 chr13 53796000 53796680 -65948218 + MER92B LTR ERV1 1 636 0 22 35 0 0 chr13 53797057 53797086 -65947812 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 53798362 53798383 -65946515 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr13 53798722 53798759 -65946139 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr13 53799549 53799580 -65945318 + AT_rich Low_complexity Low_complexity 1 31 0 796 307 57 62 chr13 53799684 53800172 -65944726 - L2 LINE L2 0 3313 2828 1364 140 133 8 chr13 53800230 53800494 -65944404 - MSTA LTR MaLR -131 297 1 186 296 0 0 chr13 53800494 53800538 -65944360 + L2 LINE L2 2576 2619 -695 646 107 12 0 chr13 53800538 53800638 -65944260 + MSTA LTR MaLR 268 428 0 22 56 0 0 chr13 53801182 53801218 -65943680 + AT_rich Low_complexity Low_complexity 1 36 0 589 254 73 11 chr13 53801673 53801850 -65943048 - MER5A DNA MER1_type 0 189 2 186 71 0 0 chr13 53801874 53801902 -65942996 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 360 317 42 0 chr13 53802580 53802700 -65942198 + L1MEc LINE L1 1770 1894 -4502 25 31 0 0 chr13 53802808 53802840 -65942058 + AT_rich Low_complexity Low_complexity 1 32 0 2096 99 3 0 chr13 53802965 53803290 -65941608 + AluSx SINE Alu 1 326 0 2211 107 0 0 chr13 53803707 53804007 -65940891 + AluSx SINE Alu 1 300 -12 1877 125 32 42 chr13 53804348 53804661 -65940237 + AluSx SINE Alu 1 310 -2 188 65 0 32 chr13 53804719 53804750 -65940148 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 805 140 28 9 chr13 53804751 53804966 -65939932 + CT-rich Low_complexity Low_complexity 1 218 0 21 0 0 0 chr13 53805095 53805116 -65939782 + AT_rich Low_complexity Low_complexity 1 21 0 925 36 0 0 chr13 53805116 53805227 -65939671 - L1PA3 LINE L1 0 6155 6045 665 76 0 0 chr13 53805227 53805319 -65939579 + L1PA3 LINE L1 5851 5942 -213 331 269 38 106 chr13 53805633 53805793 -65939105 - LTR33A LTR ERVL -371 152 4 225 139 0 0 chr13 53805810 53805853 -65939045 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 25 0 0 0 chr13 53805946 53805971 -65938927 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr13 53806196 53806230 -65938668 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr13 53806367 53806392 -65938506 + AT_rich Low_complexity Low_complexity 1 25 0 24 91 0 0 chr13 53806496 53806562 -65938336 + AT_rich Low_complexity Low_complexity 1 66 0 372 290 35 28 chr13 53807436 53807581 -65937317 + MIR SINE MIR 43 188 -74 303 235 15 0 chr13 53809854 53809922 -65934976 - LTR16B LTR ERVL 0 464 396 1409 186 30 4 chr13 53810340 53810604 -65934294 + AluJb SINE Alu 21 291 -21 1593 302 47 37 chr13 53810613 53810833 -65934065 - HERV16 LTR ERVL -2709 2287 2071 1484 220 36 12 chr13 53810833 53811169 -65933729 - MER2 DNA MER2_type 0 344 1 1593 302 47 37 chr13 53811169 53811709 -65933189 - HERV16 LTR ERVL -2925 2071 1597 1457 354 33 3 chr13 53811793 53812456 -65932442 - HERV16 LTR ERVL -3583 1413 731 1972 204 50 9 chr13 53812573 53813010 -65931888 - MLT1C LTR MaLR -12 455 1 2241 105 0 13 chr13 53813402 53813717 -65931181 - AluSx SINE Alu -1 311 1 604 285 103 61 chr13 53813927 53814352 -65930546 - LTR16B LTR ERVL -19 445 3 25 51 0 0 chr13 53814569 53814608 -65930290 + AT_rich Low_complexity Low_complexity 1 39 0 268 309 81 0 chr13 53814776 53814899 -65929999 + L2 LINE L2 1901 2033 -1281 1922 157 135 6 chr13 53815003 53815359 -65929539 + MSTA LTR MaLR 3 404 -24 6081 205 16 6 chr13 53815369 53816638 -65928260 + L1P LINE L1 3784 5064 -1082 330 307 73 0 chr13 53816666 53816858 -65928040 + L1M4 LINE L1 2603 2808 -3338 399 135 24 143 chr13 53816860 53816986 -65927912 + L1MB7 LINE L1 6066 6176 -8 618 242 27 22 chr13 53816994 53817217 -65927681 + L1M4 LINE L1 2819 3042 -3104 337 241 18 27 chr13 53817288 53817400 -65927498 - MER97b DNA MER1_type? 0 1053 943 1584 239 23 87 chr13 53817603 53818033 -65926865 - MER97c DNA MER1_type? -519 571 190 297 0 0 0 chr13 53818033 53818066 -65926832 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1584 239 23 87 chr13 53818066 53818243 -65926655 - MER97c DNA MER1_type? -900 190 3 421 338 46 28 chr13 53818309 53818525 -65926373 - L2 LINE L2 -1643 1671 1452 1821 171 0 3 chr13 53818593 53818897 -65926001 - AluJb SINE Alu -9 303 1 565 283 61 19 chr13 53818991 53819203 -65925695 - MIR SINE MIR -18 244 24 6895 186 146 22 chr13 53820192 53820981 -65923917 - MER52A LTR ERV1 0 1755 1065 2685 76 24 0 chr13 53820981 53821350 -65923548 - L1PA8 LINE L1 -3 6169 5792 6895 186 146 22 chr13 53821350 53822121 -65922777 - MER52A LTR ERV1 -690 1065 1 369 341 35 58 chr13 53822530 53822756 -65922142 + MIR SINE MIR 20 240 -22 21 36 0 0 chr13 53823830 53823858 -65921040 + AT_rich Low_complexity Low_complexity 1 28 0 4032 99 2 0 chr13 53824543 53825096 -65919802 - MER41A LTR ERV1 0 554 1 233 313 113 33 chr13 53825378 53825528 -65919370 - L2 LINE L2 -1402 1912 1751 26 30 0 0 chr13 53825606 53825639 -65919259 + AT_rich Low_complexity Low_complexity 1 33 0 2124 161 8 25 chr13 53825906 53826304 -65918594 - L1PA16 LINE L1 -9 6157 5767 22 43 0 21 chr13 53826379 53826397 -65918501 + AT_rich Low_complexity Low_complexity 1 18 -28 701 191 0 0 chr13 53826397 53826512 -65918386 + FLAM_A SINE Alu 1 115 -18 22 43 0 21 chr13 53826512 53826540 -65918358 + AT_rich Low_complexity Low_complexity 18 46 0 237 342 53 9 chr13 53826718 53826832 -65918066 - MIR SINE MIR -21 241 123 575 62 12 0 chr13 53826935 53827015 -65917883 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 10962 148 63 32 chr13 53827118 53827958 -65916940 - Tigger1 DNA MER2_type 0 2418 1605 2293 172 39 0 chr13 53827958 53828370 -65916528 - MSTA LTR MaLR 0 428 1 10962 148 63 32 chr13 53828370 53828464 -65916434 - Tigger1 DNA MER2_type -813 1605 1515 192 40 0 0 chr13 53828464 53828489 -65916409 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2029 127 3 7 chr13 53828491 53828783 -65916115 - AluSx SINE Alu -21 291 1 10962 148 63 32 chr13 53828783 53829726 -65915172 - Tigger1 DNA MER2_type -903 1515 450 760 201 11 26 chr13 53829726 53829915 -65914983 + MER30B DNA MER1_type 1 186 -4 10962 148 63 32 chr13 53829915 53830380 -65914518 - Tigger1 DNA MER2_type -1968 450 1 223 371 21 0 chr13 53830520 53830617 -65914281 - L2 LINE L2 -36 3236 3138 1886 126 3 120 chr13 53830809 53831191 -65913707 + MER1B DNA MER1_type 1 337 0 242 303 47 43 chr13 53832336 53832613 -65912285 + L1ME LINE L1 5353 5630 -540 2048 152 3 0 chr13 53832796 53833106 -65911792 - AluSq SINE Alu 0 313 3 316 219 0 109 chr13 53833162 53833290 -65911608 - L1MC4 LINE L1 -1339 6703 6590 248 406 47 8 chr13 53833351 53833479 -65911419 - L2 LINE L2 -23 3249 3117 2560 52 0 10 chr13 53834192 53834501 -65910397 - AluY SINE Alu -5 306 1 36 40 0 0 chr13 53834732 53834782 -65910116 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr13 53836011 53836036 -65908862 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 53837311 53837340 -65907558 + AT_rich Low_complexity Low_complexity 1 29 0 257 346 92 0 chr13 53837795 53837925 -65906973 - MIR SINE MIR -72 190 49 3861 121 114 138 chr13 53837938 53839472 -65905426 + pTR5 LTR ERV1 743 2438 0 1441 170 107 71 chr13 53839657 53840275 -65904623 + LTR48 LTR ERV1 18 640 -4 2815 171 48 46 chr13 53840302 53840993 -65903905 + LTR8A LTR ERV1 34 725 -2 4295 138 40 58 chr13 53840993 53841834 -65903064 + LTR1B LTR ERV1 1 826 0 1208 274 103 8 chr13 53841842 53842328 -65902570 + MLT1E LTR MaLR 62 593 0 216 67 0 0 chr13 53844264 53844294 -65900604 + (TG)n Simple_repeat Simple_repeat 1 30 0 439 354 42 0 chr13 53845199 53845411 -65899487 + MIR SINE MIR 10 230 -32 2114 130 0 0 chr13 53845429 53845721 -65899177 + AluSx SINE Alu 6 297 -15 1399 64 223 0 chr13 53846554 53846787 -65898111 + LTR12 LTR ERV1 1 285 -429 275 253 11 0 chr13 53846787 53846878 -65898020 + LTR30 LTR ERV1 552 643 -79 1473 128 35 0 chr13 53846878 53847105 -65897793 + LTR12 LTR ERV1 480 714 0 2137 148 117 14 chr13 53847598 53848016 -65896882 + LOR1b LTR ERV1 1 461 0 1781 174 57 0 chr13 53848016 53848367 -65896531 + LOR1b-int LTR ERV1 1 371 -7749 6039 127 48 23 chr13 53848377 53849501 -65895397 + LTR12-int LTR ERV1 203 1354 -6766 16682 136 39 32 chr13 53849539 53852867 -65892031 + LTR12-int LTR ERV1 1439 4789 -3331 731 245 25 0 chr13 53852873 53853036 -65891862 - MER52A LTR ERV1 -2 1753 1587 * 1357 208 45 45 chr13 53853020 53853572 -65891326 - MER52A LTR ERV1 -396 1359 663 18432 109 10 8 chr13 53853577 53856325 -65888573 - MER52A-int LTR ERV1 0 7091 4340 557 102 20 20 chr13 53856325 53856423 -65888475 + MER4A LTR ERV1 1 98 -566 1690 118 11 78 chr13 53856423 53856793 -65888105 + MER4A LTR ERV1 261 664 0 18335 131 19 20 chr13 53856794 53860270 -65884628 - MER52A-int LTR ERV1 -2749 4342 739 2138 114 0 43 chr13 53860270 53860595 -65884303 + AluY SINE Alu 1 311 0 18335 131 19 20 chr13 53860595 53861334 -65883564 - MER52A-int LTR ERV1 -6352 739 1 1807 226 27 57 chr13 53861334 53861883 -65883015 - MER52A LTR ERV1 0 1755 641 1310 157 31 66 chr13 53861887 53862174 -65882724 + LTR12 LTR ERV1 1 277 -437 252 243 14 0 chr13 53862174 53862244 -65882654 + LTR30 LTR ERV1 544 614 -108 754 143 45 60 chr13 53862244 53862411 -65882487 + LTR12 LTR ERV1 299 483 -231 * 8094 134 4 26 chr13 53862395 53863773 -65881125 + HERV9 LTR ERV1 55 1401 -6998 * 23432 99 5 4 chr13 53863770 53867155 -65877743 + HERV9 LTR ERV1 1568 4954 -3445 1695 136 42 62 chr13 53867148 53867913 -65876985 + HERV17 LTR ERV1 761 1740 -5156 * 4839 129 4 8 chr13 53867911 53868688 -65876210 + HERV17 LTR ERV1 7626 8399 0 1387 132 108 4 chr13 53868688 53868939 -65875959 + LTR12 LTR ERV1 1 277 -437 301 169 28 28 chr13 53868939 53869010 -65875888 + LTR30 LTR ERV1 544 614 -108 762 163 23 0 chr13 53869010 53869139 -65875759 + LTR12 LTR ERV1 349 480 -234 1296 199 13 63 chr13 53869475 53869926 -65874972 - MER52A LTR ERV1 -523 1232 663 3429 117 42 17 chr13 53869926 53870565 -65874333 + LOR1-int LTR ERV1 4780 5434 -2686 249 133 142 17 chr13 53870909 53871029 -65873869 + (TTAAA)n Simple_repeat Simple_repeat 2 136 0 1663 153 42 88 chr13 53871746 53872099 -65872799 - MER1B DNA MER1_type 0 337 1 1521 159 85 15 chr13 53872497 53872768 -65872130 + AluJb SINE Alu 1 290 -22 5217 160 31 44 chr13 53873675 53875583 -65869315 - L1MA5A LINE L1 -17 6280 4368 20356 105 14 2 chr13 53875585 53879449 -65865449 - L1PA7 LINE L1 0 6469 2569 4071 101 8 5 chr13 53879449 53880074 -65864824 - L1PA7 LINE L1 -4829 1632 1006 1954 138 0 21 chr13 53880057 53880382 -65864516 - L1PA7 LINE L1 -6136 325 8 * 5827 206 19 26 chr13 53880392 53881429 -65863469 - L1MA5A LINE L1 -1769 4377 3353 2142 97 7 13 chr13 53881429 53881729 -65863169 - AluY SINE Alu -13 298 1 5827 206 19 26 chr13 53881729 53882160 -65862738 - L1MA5A LINE L1 -2793 3353 2920 576 165 0 0 chr13 53882177 53882262 -65862636 - FLAM SINE Alu -21 122 38 2228 113 7 0 chr13 53882444 53882754 -65862144 - AluSx SINE Alu 0 312 1 8626 228 51 32 chr13 53883651 53884156 -65860742 - L1MA4A LINE L1 -8 6295 5801 1907 62 62 0 chr13 53884156 53884413 -65860485 - AluY SINE Alu 0 311 39 8626 228 51 32 chr13 53884413 53887351 -65857547 - L1MA4A LINE L1 -502 5801 2799 1627 251 59 60 chr13 53887351 53888331 -65856567 + L1MA4A LINE L1 2091 3064 -3318 2160 164 6 3 chr13 53888381 53888741 -65856157 + THE1B LTR MaLR 2 362 -2 8144 118 175 0 chr13 53888743 53890087 -65854811 + THE1B-int LTR MaLR 1 1579 -1 2184 156 6 8 chr13 53890088 53890453 -65854445 + THE1B LTR MaLR 1 364 0 180 176 0 0 chr13 53890489 53890523 -65854375 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 298 277 0 0 chr13 53890555 53890638 -65854260 + (TA)n Simple_repeat Simple_repeat 2 84 0 1206 317 127 27 chr13 53890642 53891258 -65853640 + L2 LINE L2 1295 1985 -1329 2004 173 16 19 chr13 53891258 53891634 -65853264 + THE1C LTR MaLR 1 375 0 1206 317 127 27 chr13 53891634 53891689 -65853209 + L2 LINE L2 1985 2033 -1281 183 229 0 0 chr13 53891721 53891782 -65853116 + T-rich Low_complexity Low_complexity 1 61 0 807 243 36 8 chr13 53892024 53892385 -65852513 - MLT2B1 LTR ERVL -60 460 2 359 322 23 35 chr13 53892388 53892562 -65852336 + L2 LINE L2 3137 3308 -5 25 0 6 0 chr13 53893545 53893599 -65851299 + AT_rich Low_complexity Low_complexity 1 25 0 381 358 147 29 chr13 53893915 53894751 -65850147 - L2 LINE L2 -656 2658 1724 36 77 0 0 chr13 53895720 53895798 -65849100 + AT_rich Low_complexity Low_complexity 1 78 0 410 318 84 28 chr13 53896705 53897098 -65847800 - L1M4 LINE L1 -1383 4763 4349 627 286 66 33 chr13 53897133 53897374 -65847524 + MIR SINE MIR 5 253 -9 21 0 0 0 chr13 53897430 53897451 -65847447 + AT_rich Low_complexity Low_complexity 1 21 0 189 171 0 0 chr13 53897632 53897667 -65847231 + CT-rich Low_complexity Low_complexity 1 35 0 605 197 8 41 chr13 53897669 53897791 -65847107 - FLAM_C SINE Alu -25 118 1 3547 145 133 8 chr13 53898000 53899356 -65845542 - pTR5 LTR ERV1 0 2606 1524 315 364 12 19 chr13 53899430 53899592 -65845306 - LTR33 LTR ERVL -309 212 52 23 33 0 0 chr13 53899976 53900006 -65844892 + AT_rich Low_complexity Low_complexity 1 30 0 231 356 127 13 chr13 53900358 53900594 -65844304 + L2 LINE L2 2443 2705 -609 2144 168 6 11 chr13 53900855 53901219 -65843679 + THE1C LTR MaLR 14 375 0 1497 189 14 0 chr13 53901371 53901668 -65843230 - L1P LINE L1 -2367 3779 3479 2042 121 26 71 chr13 53901677 53901989 -65842909 + L1PA15 LINE L1 5782 6106 -59 279 0 0 0 chr13 53901989 53902020 -65842878 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2042 121 26 71 chr13 53902020 53902038 -65842860 + L1PA15 LINE L1 6106 6123 -42 7731 16 4 0 chr13 53902038 53903328 -65841570 - L1PA3 LINE L1 -4 6151 4860 2042 121 26 71 chr13 53903328 53903376 -65841522 + L1PA15 LINE L1 6123 6144 -21 335 303 0 0 chr13 53903399 53903488 -65841410 + L1MC4 LINE L1 6615 6703 -1339 23 33 0 0 chr13 53903608 53903638 -65841260 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 53904411 53904437 -65840461 + AT_rich Low_complexity Low_complexity 1 26 0 2615 192 26 26 chr13 53905633 53906237 -65838661 + L1MA10 LINE L1 5731 6334 0 21 71 0 0 chr13 53906693 53906735 -65838163 + AT_rich Low_complexity Low_complexity 1 42 0 488 307 73 28 chr13 53907674 53908109 -65836789 - L1MC/D LINE L1 -722 5429 5366 225 322 0 0 chr13 53909503 53909562 -65835336 - L2 LINE L2 -7 3306 3248 21 0 0 0 chr13 53909608 53909629 -65835269 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 53910050 53910071 -65834827 + AT_rich Low_complexity Low_complexity 1 21 0 278 333 44 8 chr13 53910861 53911113 -65833785 + L1ME1 LINE L1 4399 4659 -1487 997 251 80 23 chr13 53911709 53912147 -65832751 - LTR37B LTR ERV1 -2 466 4 24 53 0 0 chr13 53912480 53912518 -65832380 + AT_rich Low_complexity Low_complexity 1 38 0 1064 207 11 19 chr13 53912600 53912866 -65832032 + L1MD3 LINE L1 7731 7994 -1 27 29 0 0 chr13 53914346 53914380 -65830518 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr13 53916756 53916782 -65828116 + AT_rich Low_complexity Low_complexity 1 26 0 447 328 28 17 chr13 53918751 53918928 -65825970 + LTR33 LTR ERVL 4 182 -339 3396 195 27 1 chr13 53918939 53919648 -65825250 - L1MC1 LINE L1 0 6333 5607 192 269 173 19 chr13 53920128 53920232 -65824666 - MIR SINE MIR -19 243 124 195 69 0 0 chr13 53922419 53922448 -65822450 + (TA)n Simple_repeat Simple_repeat 1 29 0 1196 195 103 29 chr13 53922922 53923194 -65821704 + AluJo SINE Alu 2 293 -9 538 355 93 49 chr13 53923327 53923782 -65821116 - L2 LINE L2 0 3313 2880 2128 126 0 0 chr13 53923782 53924083 -65820815 + AluY SINE Alu 1 301 -10 538 355 93 49 chr13 53924083 53924841 -65820057 - L2 LINE L2 -433 2880 1947 281 280 43 0 chr13 53925427 53925520 -65819378 + L1ME1 LINE L1 5134 5230 -916 203 270 11 11 chr13 53925538 53925627 -65819271 + (TA)n Simple_repeat Simple_repeat 1 89 0 2655 242 83 26 chr13 53925643 53925688 -65819210 + L1ME1 LINE L1 5267 5308 -858 2306 79 0 13 chr13 53925688 53925991 -65818907 + AluY SINE Alu 1 299 -12 2655 242 83 26 chr13 53925991 53926041 -65818857 + L1ME1 LINE L1 5308 5354 -812 518 244 0 22 chr13 53926041 53926176 -65818722 - FLAM_C SINE Alu 0 133 2 2655 242 83 26 chr13 53926176 53926289 -65818609 + L1ME1 LINE L1 5354 5459 -707 450 0 0 0 chr13 53926289 53926339 -65818559 + (CA)n Simple_repeat Simple_repeat 1 50 0 2655 242 83 26 chr13 53926339 53926975 -65817923 + L1ME1 LINE L1 5459 6161 -5 321 258 40 24 chr13 53927213 53927337 -65817561 - MLT1J LTR MaLR -335 176 51 1087 214 74 19 chr13 53927344 53927615 -65817283 + AluJo SINE Alu 25 310 -2 213 196 0 0 chr13 53927657 53927713 -65817185 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 205 171 0 0 chr13 53928529 53928570 -65816328 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 1994 77 70 14 chr13 53928574 53928861 -65816037 - AluY SINE Alu -8 303 1 1892 138 67 14 chr13 53929039 53929395 -65815503 + THE1C LTR MaLR 1 375 0 243 214 10 20 chr13 53930397 53930495 -65814403 + CT-rich Low_complexity Low_complexity 1 97 0 216 242 81 16 chr13 53930514 53930576 -65814322 + MIR SINE MIR 184 249 -13 232 283 0 0 chr13 53931289 53931342 -65813556 + (CA)n Simple_repeat Simple_repeat 2 54 0 316 337 48 27 chr13 53931894 53932081 -65812817 - MLT1J LTR MaLR -236 275 85 4983 59 3 0 chr13 53933246 53933872 -65811026 - L1PA8 LINE L1 -19 6153 5526 2070 65 0 0 chr13 53933872 53934235 -65810663 + L1PA8 LINE L1 5164 5526 -605 478 325 47 71 chr13 53934518 53934985 -65809913 - MLT1J LTR MaLR -41 470 15 296 148 16 0 chr13 53935917 53935978 -65808920 + (TA)n Simple_repeat Simple_repeat 1 62 0 7121 169 146 41 chr13 53936051 53937639 -65807259 - MER52A LTR ERV1 0 1755 1 708 218 0 8 chr13 53937938 53938071 -65806827 - FLAM_C SINE Alu 0 133 2 32 57 0 0 chr13 53938207 53938260 -65806638 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr13 53938675 53938696 -65806202 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 53938953 53938997 -65805901 + AT_rich Low_complexity Low_complexity 1 44 0 1974 167 115 14 chr13 53939779 53940198 -65804700 - LOR1b LTR ERV1 0 461 1 540 165 0 0 chr13 53940198 53940289 -65804609 - LOR1b-int LTR ERV1 0 8120 8030 * 1697 144 30 8 chr13 53940288 53940643 -65804255 - LOR1-int LTR ERV1 -1086 5941 5369 27 29 0 0 chr13 53941068 53941102 -65803796 + AT_rich Low_complexity Low_complexity 1 34 0 1142 207 38 54 chr13 53941158 53941419 -65803479 - ERVL LTR ERVL -3505 2259 2003 2340 163 34 2 chr13 53941426 53941844 -65803054 - MSTB1 LTR MaLR -1 431 1 3829 185 56 17 chr13 53941844 53942590 -65802308 - MSTB1-int LTR MaLR 0 1651 877 1191 258 95 14 chr13 53942591 53943366 -65801532 - ERVL LTR ERVL -4490 1164 294 349 198 18 0 chr13 53943413 53943524 -65801374 + (TA)n Simple_repeat Simple_repeat 1 113 0 330 288 108 7 chr13 53943582 53943721 -65801177 - ERVL LTR ERVL -5500 154 2 675 237 193 55 chr13 53943730 53944165 -65800733 - MLT1D LTR MaLR -8 497 3 189 171 0 0 chr13 53944730 53944765 -65800133 + (TA)n Simple_repeat Simple_repeat 2 36 0 29 47 0 0 chr13 53944983 53945026 -65799872 + AT_rich Low_complexity Low_complexity 1 43 0 1198 230 129 59 chr13 53945202 53945658 -65799240 + MLT1D LTR MaLR 18 505 0 268 192 48 106 chr13 53945804 53945908 -65798990 + MIR SINE MIR 97 194 -68 493 310 75 5 chr13 53947045 53947258 -65797640 - MIR SINE MIR -8 254 27 3148 143 103 48 chr13 53949752 53950845 -65794053 - pTR5 LTR ERV1 -156 1481 6 382 205 0 26 chr13 53950986 53951064 -65793834 + MLT1D LTR MaLR 1 76 -429 243 269 0 0 chr13 53951835 53951902 -65792996 + (TA)n Simple_repeat Simple_repeat 1 67 0 26 30 0 0 chr13 53952155 53952188 -65792710 + AT_rich Low_complexity Low_complexity 1 33 0 825 305 24 4 chr13 53952972 53953218 -65791680 + ERVL LTR ERVL 3195 3445 -2319 192 77 0 0 chr13 53953233 53953259 -65791639 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 470 280 53 34 chr13 53953629 53953836 -65791062 + LTR33 LTR ERVL 311 521 0 351 78 0 0 chr13 53955346 53955397 -65789501 + (TC)n Simple_repeat Simple_repeat 2 52 0 24 32 0 0 chr13 53955909 53955940 -65788958 + AT_rich Low_complexity Low_complexity 1 31 0 237 360 25 25 chr13 53955995 53956089 -65788809 + MIR SINE MIR 94 190 -72 558 88 0 0 chr13 53956089 53956169 -65788729 - MADE1 DNA Mariner 0 80 1 237 360 25 25 chr13 53956169 53956235 -65788663 + MIR SINE MIR 189 254 -8 1907 220 43 31 chr13 53956365 53956852 -65788046 - MLT1D LTR MaLR -7 498 6 334 313 46 0 chr13 53957244 53957465 -65787433 - L1ME3A LINE L1 -304 5817 5627 432 287 124 13 chr13 53957484 53957788 -65787110 - L1ME3A LINE L1 -646 5518 5188 532 366 91 40 chr13 53958113 53959115 -65785783 - L2 LINE L2 -1080 2234 1098 2847 7 0 0 chr13 53960210 53960517 -65784381 + AluYa5 SINE Alu 1 307 -4 7037 55 9 0 chr13 53961476 53962864 -65782034 - L1PA8 LINE L1 -7 6165 4768 779 143 119 0 chr13 53962864 53962990 -65781908 + L1P3 LINE L1 201 341 -6120 293 349 39 23 chr13 53965104 53965233 -65779665 - MIR SINE MIR -58 150 20 229 302 142 35 chr13 53965404 53965573 -65779325 - L2 LINE L2 -24 3289 3103 511 341 39 5 chr13 53965636 53965844 -65779054 - L2 LINE L2 -424 2890 2676 232 297 0 0 chr13 53965959 53966023 -65778875 + (TAG)n Simple_repeat Simple_repeat 1 64 0 201 346 118 28 chr13 53966305 53966559 -65778339 + L2 LINE L2 3005 3281 -32 301 58 39 0 chr13 53968144 53968196 -65776702 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2439 98 0 0 chr13 53968677 53968984 -65775914 - AluSx SINE Alu -5 307 1 13367 171 22 9 chr13 53969223 53971479 -65773419 + L1M1 LINE L1 17 2301 -5264 744 135 0 68 chr13 53971484 53971617 -65773281 + THE1B LTR MaLR 241 364 0 2940 104 16 16 chr13 53971620 53972110 -65772788 + L1M1 LINE L1 2870 3359 -4206 5687 115 173 4 chr13 53972111 53973220 -65771678 + L1PA7 LINE L1 1 1677 -4784 18319 107 8 2 chr13 53973220 53976740 -65768158 + L1PA7 LINE L1 2934 6463 -6 1576 194 41 9 chr13 53976754 53977436 -65767462 + L1M1 LINE L1 3347 4082 -3483 327 302 74 45 chr13 53977538 53977740 -65767158 - HAL1 LINE L1 -1026 1481 1274 248 278 68 26 chr13 53977777 53977968 -65766930 - HAL1 LINE L1 -1329 1178 980 9794 195 25 6 chr13 53978113 53981119 -65763779 + L1PA14 LINE L1 3091 6157 -4 35 41 0 0 chr13 53981120 53981169 -65763729 + AT_rich Low_complexity Low_complexity 1 49 0 1017 253 113 38 chr13 53981980 53982466 -65762432 - LTR28 LTR ERV1 -137 499 1 250 317 154 82 chr13 53982581 53982997 -65761901 - L2 LINE L2 -1 3271 2826 568 205 116 0 chr13 53983869 53983981 -65760917 + FLAM_C SINE Alu 1 125 -18 278 306 53 52 chr13 53984378 53984530 -65760368 - MIR SINE MIR -42 166 11 1631 172 7 21 chr13 53985306 53985591 -65759307 - AluJb SINE Alu -31 281 1 21 0 0 0 chr13 53987082 53987103 -65757795 + AT_rich Low_complexity Low_complexity 1 21 0 741 71 106 0 chr13 53987125 53987238 -65757660 - LTR12 LTR ERV1 0 714 590 4435 95 33 158 chr13 53987238 53988181 -65756717 - LTR12 LTR ERV1 0 826 2 393 245 12 25 chr13 53988261 53988424 -65756474 - pTR5 LTR ERV1 -1410 1028 868 5485 161 71 42 chr13 53988694 53989980 -65754918 - pTR5 LTR ERV1 -373 2065 743 6847 163 14 9 chr13 53989980 53992418 -65752480 + L1MA3 LINE L1 3856 6305 0 30 100 0 0 chr13 53992431 53992531 -65752367 + AT_rich Low_complexity Low_complexity 1 100 0 1010 193 124 69 chr13 53992570 53992948 -65751950 + MER57A LTR ERV1 3 401 -2 2285 105 0 13 chr13 53993608 53993940 -65750958 - AluSx SINE Alu 0 312 1 1708 165 23 3 chr13 53994257 53994618 -65750280 - MER7A DNA MER2_type 0 346 1 385 300 31 38 chr13 53995523 53995683 -65749215 + MIR SINE MIR 30 188 -74 270 0 0 0 chr13 53995683 53995713 -65749185 + (TG)n Simple_repeat Simple_repeat 1 30 0 991 217 90 98 chr13 53996076 53996640 -65748258 - MLT1E1 LTR MaLR -8 585 1 1090 228 92 22 chr13 54047906 54048265 -65696633 - L1ME1 LINE L1 -4 6162 5779 404 282 78 33 chr13 54048392 54048637 -65696261 - L1ME1 LINE L1 -409 5712 5457 21 57 0 0 chr13 54048989 54049024 -65695874 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr13 54049283 54049309 -65695589 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr13 54049654 54049675 -65695223 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 54049961 54049991 -65694907 + AT_rich Low_complexity Low_complexity 1 30 0 818 317 57 21 chr13 54050142 54050669 -65694229 + L1ME3A LINE L1 5398 5943 -227 2439 55 0 26 chr13 54050759 54051069 -65693829 - AluY SINE Alu -9 302 1 323 273 37 64 chr13 54051190 54051377 -65693521 - L1ME LINE L1 -5226 844 663 21 57 0 0 chr13 54051383 54051418 -65693480 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 54052093 54052114 -65692784 + AT_rich Low_complexity Low_complexity 1 21 0 256 247 94 0 chr13 54052124 54052209 -65692689 - L1ME1 LINE L1 -750 5420 5328 492 280 18 0 chr13 54052336 54052504 -65692394 - L1ME1 LINE L1 -1040 5106 4936 25 51 0 0 chr13 54052595 54052634 -65692264 + AT_rich Low_complexity Low_complexity 1 39 0 1238 147 135 36 chr13 54052634 54052886 -65692012 - AluJo SINE Alu -30 282 6 5138 61 10 15 chr13 54053100 54054316 -65690582 - L1PA6 LINE L1 -228 5926 4720 303 71 0 0 chr13 54054676 54054718 -65690180 + (ATG)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr13 54055272 54055302 -65689596 + AT_rich Low_complexity Low_complexity 1 30 0 387 330 138 21 chr13 54055594 54055782 -65689116 - MIR SINE MIR -1 261 52 1765 65 5 0 chr13 54055812 54056029 -65688869 - AluY SINE Alu -7 304 87 371 91 0 0 chr13 54056212 54056267 -65688631 - L1MA3 LINE L1 -10 6295 6241 258 217 33 0 chr13 54056314 54056374 -65688524 + CT-rich Low_complexity Low_complexity 3 64 0 2364 47 3 7 chr13 54057770 54058070 -65686828 - AluY SINE Alu -12 299 1 234 0 0 0 chr13 54058718 54058744 -65686154 + (CA)n Simple_repeat Simple_repeat 2 27 0 24 67 0 0 chr13 54060426 54060471 -65684427 + AT_rich Low_complexity Low_complexity 1 45 0 1222 200 126 15 chr13 54060806 54061076 -65683822 + AluJb SINE Alu 1 300 -2 581 301 152 41 chr13 54061493 54061935 -65682963 + L2 LINE L2 2291 2781 -533 293 82 20 0 chr13 54061949 54061998 -65682900 + (TA)n Simple_repeat Simple_repeat 1 50 0 32 26 0 0 chr13 54062176 54062215 -65682683 + AT_rich Low_complexity Low_complexity 1 39 0 486 282 27 16 chr13 54064158 54064323 -65680575 - MLT1J LTR MaLR -163 287 109 213 39 0 0 chr13 54065147 54065173 -65679725 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr13 54065645 54065668 -65679230 + (A)n Simple_repeat Simple_repeat 1 23 0 4175 165 18 11 chr13 54066020 54067097 -65677801 - L1MA4 LINE L1 -320 5980 4895 854 293 44 33 chr13 54067112 54067416 -65677482 + MER74B LTR ERVL 183 493 -129 2012 128 174 8 chr13 54067416 54067783 -65677115 + MSTA LTR MaLR 1 428 0 854 293 44 33 chr13 54067783 54067840 -65677058 + MER74B LTR ERVL 493 548 -74 2215 211 73 6 chr13 54067887 54068436 -65676462 + L1MB7 LINE L1 5589 6174 -10 2059 130 3 3 chr13 54071223 54071524 -65673374 - AluSg SINE Alu -9 301 1 1296 237 25 80 chr13 54072339 54072778 -65672120 + MLT1C LTR MaLR 53 467 0 1095 304 137 24 chr13 54072850 54073527 -65671371 + L2 LINE L2 1505 2258 -1056 1895 100 89 4 chr13 54073560 54073829 -65671069 + AluSx SINE Alu 1 292 -20 380 302 202 26 chr13 54074129 54074480 -65670418 + MLT1J LTR MaLR 98 510 -1 1979 127 0 36 chr13 54074674 54074981 -65669917 + AluSq SINE Alu 1 296 -17 3167 157 26 0 chr13 54075276 54075816 -65669082 + MER41C LTR ERV1 1 554 0 420 255 68 52 chr13 54076117 54076309 -65668589 - LTR68 LTR ERV1 -309 431 237 359 294 27 14 chr13 54076338 54076484 -65668414 - LTR68 LTR ERV1 -590 150 3 364 282 29 109 chr13 54077242 54077416 -65667482 + MLT1J LTR MaLR 93 252 -259 301 333 0 0 chr13 54077603 54077693 -65667205 + L1MC4 LINE L1 6614 6703 -1339 * 342 200 7 44 chr13 54077674 54077787 -65667111 + L1MC4 LINE L1 1996 6983 -1339 194 346 73 29 chr13 54078032 54078168 -65666730 - L2 LINE L2 -734 2580 2439 3547 204 81 28 chr13 54078258 54079078 -65665820 - MER21B LTR ERV1 0 863 1 2048 126 102 42 chr13 54079149 54079553 -65665345 - LTR21A LTR ERV1 -16 489 62 4849 203 72 73 chr13 54079555 54080226 -65664672 - HERVFH21 LTR ERV1 0 6529 5859 6126 78 17 4 chr13 54080226 54081041 -65663857 + LTR12 LTR ERV1 1 826 0 4849 203 72 73 chr13 54081041 54083374 -65661524 - HERVFH21 LTR ERV1 -670 5859 3520 4893 101 8 10 chr13 54083374 54084097 -65660801 - LTR30 LTR ERV1 0 722 1 4849 203 72 73 chr13 54084097 54084544 -65660354 - HERVFH21 LTR ERV1 -3009 3520 3074 1360 76 0 0 chr13 54084541 54084726 -65660172 - HERVFH21 LTR ERV1 -4238 2291 2107 * 718 187 80 0 chr13 54084727 54084877 -65660021 - pTR5 LTR ERV1 -862 1576 1415 2189 117 0 7 chr13 54084900 54085208 -65659690 - AluSq SINE Alu -7 306 1 225 372 41 8 chr13 54085236 54085357 -65659541 + L2 LINE L2 2643 2767 -547 3219 151 27 7 chr13 54085742 54086298 -65658600 - Tigger3(Golem) DNA MER2_type 0 3029 2463 207 0 0 0 chr13 54086817 54086840 -65658058 + (A)n Simple_repeat Simple_repeat 1 23 0 1353 227 153 5 chr13 54087732 54088164 -65656734 + LTR54B LTR ERV1 1 496 -2 2055 112 0 0 chr13 54088520 54088820 -65656078 - AluSx SINE Alu 0 309 10 287 254 55 41 chr13 54088834 54088993 -65655905 + L1M4b LINE L1 2 472 -6383 189 74 0 0 chr13 54089050 54089077 -65655821 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 308 293 67 83 chr13 54089409 54089455 -65655443 + L1M4b LINE L1 1016 1061 -5794 1979 130 81 26 chr13 54089455 54089800 -65655098 + THE1B LTR MaLR 1 364 0 308 293 67 83 chr13 54089800 54090053 -65654845 + L1M4b LINE L1 1061 1310 -5545 17746 30 8 0 chr13 54091106 54093274 -65651624 + L1P LINE L1 2401 4586 -1560 1977 138 34 42 chr13 54093333 54093711 -65651187 + THE1C LTR MaLR 1 375 0 240 119 119 0 chr13 54094522 54094581 -65650317 + L1ME4a LINE L1 6055 6120 -1 319 344 52 68 chr13 54095436 54095987 -65648911 - L2 LINE L2 -224 3048 2438 647 231 0 0 chr13 54095987 54096117 -65648781 + FLAM_A SINE Alu 1 130 -3 319 344 52 68 chr13 54096117 54096404 -65648494 - L2 LINE L2 -834 2438 2148 204 286 57 0 chr13 54096660 54096730 -65648168 - L2 LINE L2 -2556 758 685 223 279 198 0 chr13 54096894 54096980 -65647918 + L2 LINE L2 3191 3293 -20 463 322 110 9 chr13 54097617 54097844 -65647054 + MIR SINE MIR 13 262 0 2172 131 0 6 chr13 54098137 54098449 -65646449 - AluSg SINE Alu 0 310 1 326 275 22 51 chr13 54098612 54098750 -65646148 - L3 LINE CR1 -773 804 671 194 157 0 20 chr13 54099031 54099082 -65645816 + (TA)n Simple_repeat Simple_repeat 1 50 0 510 314 54 27 chr13 54099201 54099424 -65645474 + MIR SINE MIR 26 254 -8 21 57 0 0 chr13 54099585 54099620 -65645278 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 54100460 54100481 -65644417 + AT_rich Low_complexity Low_complexity 1 21 0 334 138 86 5 chr13 54101155 54101236 -65643662 + MSTD LTR MaLR 1 69 -327 22 0 0 0 chr13 54101400 54101422 -65643476 + AT_rich Low_complexity Low_complexity 1 22 0 345 240 0 20 chr13 54101555 54101655 -65643243 + MER103 DNA DNA 4 101 -65 298 297 55 28 chr13 54101820 54101965 -65642933 + MIR SINE MIR 74 222 -40 21 0 0 0 chr13 54102154 54102175 -65642723 + AT_rich Low_complexity Low_complexity 1 21 0 1387 214 0 31 chr13 54102829 54103123 -65641775 + AluJo SINE Alu 1 285 -27 1108 240 0 0 chr13 54103218 54103426 -65641472 + Tigger5 DNA MER2_type 2 209 -2114 1915 265 31 77 chr13 54103430 54104419 -65640479 - L1MEc LINE L1 -5410 986 43 1955 110 3 53 chr13 54104584 54104903 -65639995 - AluY SINE Alu -8 303 1 190 319 14 42 chr13 54105076 54105148 -65639750 + L2 LINE L2 3191 3260 -12 22 0 0 0 chr13 54105775 54105797 -65639101 + AT_rich Low_complexity Low_complexity 1 22 0 287 336 95 28 chr13 54106824 54107035 -65637863 + MLT1J LTR MaLR 263 487 -24 1679 175 7 13 chr13 54107114 54107417 -65637481 + AluJo SINE Alu 2 302 -10 236 318 0 34 chr13 54108248 54108336 -65636562 + MIR3 SINE MIR 90 174 -34 220 196 0 36 chr13 54109340 54109396 -65635502 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr13 54109757 54109778 -65635120 + AT_rich Low_complexity Low_complexity 1 21 0 298 316 110 0 chr13 54109780 54109916 -65634982 + MIR SINE MIR 56 206 -56 1256 181 44 38 chr13 54111337 54111598 -65633300 - MER33 DNA MER1_type -2261 324 59 2837 75 26 61 chr13 54111598 54112012 -65632886 + MLT2A1 LTR ERVL 5 403 -41 524 61 0 37 chr13 54112012 54112094 -65632804 + (TA)n Simple_repeat Simple_repeat 2 80 0 2837 75 26 61 chr13 54112094 54112135 -65632763 + MLT2A1 LTR ERVL 403 444 0 1256 181 44 38 chr13 54112135 54112188 -65632710 - MER33 DNA MER1_type -2526 59 8 672 186 0 0 chr13 54112410 54112539 -65632359 - FLAM_A SINE Alu 0 133 5 289 206 226 10 chr13 54113030 54113132 -65631766 + Charlie5 DNA MER1_type 1 124 -2488 * 1278 195 118 39 chr13 54113110 54113499 -65631399 + Charlie5 DNA MER1_type 2200 2619 0 1101 216 88 34 chr13 54114263 54114651 -65630247 + Charlie1 DNA MER1_type 2345 2753 -8 692 236 40 40 chr13 54114885 54114950 -65629948 + LTR16B LTR ERVL 234 298 -166 2292 59 10 0 chr13 54114950 54115238 -65629660 - AluY SINE Alu -20 291 1 692 236 40 40 chr13 54115238 54115397 -65629501 + LTR16B LTR ERVL 297 458 -6 2085 136 0 0 chr13 54115449 54115743 -65629155 - AluSx SINE Alu -16 296 3 23 0 0 0 chr13 54115952 54115975 -65628923 + AT_rich Low_complexity Low_complexity 1 23 0 1084 79 0 7 chr13 54116594 54116733 -65628165 + AluSq/x SINE Alu 1 138 -175 1633 107 8 173 chr13 54117216 54117741 -65627157 + LTR21B LTR ERV1 1 438 0 408 301 97 40 chr13 54118161 54118553 -65626345 + L1ME LINE L1 5348 5760 -361 185 376 127 29 chr13 54118948 54119153 -65625745 + L2 LINE L2 2733 2957 -357 595 189 41 16 chr13 54119501 54119623 -65625275 - AluJb SINE Alu -179 133 9 326 306 89 12 chr13 54121115 54121373 -65623525 + L1ME LINE L1 5483 5760 -361 595 189 41 16 chr13 54122321 54122443 -65622455 - AluJb SINE Alu -179 133 9 999 192 72 110 chr13 54122634 54123054 -65621844 + MER66A LTR ERV1 97 426 -52 1159 111 5 26 chr13 54125998 54126187 -65618711 + MER30B DNA MER1_type 6 190 0 279 133 0 0 chr13 54126972 54127017 -65617881 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 92 0 0 chr13 54127147 54127212 -65617686 + AT_rich Low_complexity Low_complexity 1 65 0 31 36 0 18 chr13 54127279 54127315 -65617583 + AT_rich Low_complexity Low_complexity 1 37 -18 1599 188 25 7 chr13 54127315 54127592 -65617306 - AluJo SINE Alu -30 282 1 31 36 0 18 chr13 54127592 54127611 -65617287 + AT_rich Low_complexity Low_complexity 37 55 0 2010 160 0 0 chr13 54128093 54128399 -65616499 + AluJb SINE Alu 5 310 -2 29 70 0 0 chr13 54128828 54128885 -65616013 + AT_rich Low_complexity Low_complexity 1 57 0 304 143 0 0 chr13 54129129 54129178 -65615720 + U5 snRNA snRNA 1 49 -67 282 237 64 133 chr13 54129225 54129398 -65615500 - MLT1H LTR MaLR 0 549 389 1134 305 77 44 chr13 54129804 54129890 -65615008 + L2 LINE L2 37 119 -3195 1535 254 109 8 chr13 54129890 54130358 -65614540 + LTR40a LTR ERVL 3 517 -2 1134 305 77 44 chr13 54130358 54130749 -65614149 + L2 LINE L2 119 530 -2784 180 167 0 0 chr13 54130750 54130798 -65614100 + A-rich Low_complexity Low_complexity 1 48 0 181 260 27 55 chr13 54130798 54130871 -65614027 + L2 LINE L2 518 588 -2726 1917 264 37 8 chr13 54130891 54131590 -65613308 - L1MB7 LINE L1 -4 6162 5421 1173 287 142 124 chr13 54131590 54132744 -65612154 + L2 LINE L2 566 1697 -1616 780 256 20 20 chr13 54132744 54132947 -65611951 + MER63A DNA MER1_type 1 203 -7 1173 287 142 124 chr13 54132947 54134113 -65610785 + L2 LINE L2 1697 3184 -129 186 167 0 0 chr13 54134113 54134149 -65610749 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 1173 287 142 124 chr13 54134149 54134281 -65610617 + L2 LINE L2 3184 3312 -1 23 33 0 0 chr13 54135659 54135689 -65609209 + AT_rich Low_complexity Low_complexity 1 30 0 250 327 9 62 chr13 54136550 54136663 -65608235 - L2 LINE L2 0 3313 3207 1461 194 70 32 chr13 54136766 54136829 -65608069 + MLT1A1 LTR MaLR 12 71 -294 457 99 70 0 chr13 54136829 54136900 -65607998 + MADE1 DNA Mariner 5 80 0 1461 194 70 32 chr13 54136900 54137177 -65607721 + MLT1A1 LTR MaLR 71 365 0 357 339 96 6 chr13 54137177 54137352 -65607546 + MLT2E LTR ERVL 24 214 -414 776 315 24 20 chr13 54137351 54137643 -65607255 + MLT2E LTR ERVL 321 613 -15 610 296 7 0 chr13 54137986 54138138 -65606760 + LTR33 LTR ERVL 36 188 -333 33 43 0 0 chr13 54138920 54138967 -65605931 + AT_rich Low_complexity Low_complexity 1 47 0 30 27 0 0 chr13 54139354 54139391 -65605507 + AT_rich Low_complexity Low_complexity 1 37 0 2713 247 50 64 chr13 54139483 54139764 -65605134 + L1M4 LINE L1 14 297 -6245 2359 45 3 0 chr13 54139764 54140050 -65604848 + AluY SINE Alu 1 287 -24 2713 247 50 64 chr13 54140050 54140588 -65604310 + L1M4 LINE L1 297 817 -5725 2270 75 0 3 chr13 54140588 54140880 -65604018 - AluY SINE Alu -20 291 1 2713 247 50 64 chr13 54140880 54141132 -65603766 + L1M4 LINE L1 817 1071 -5471 3365 267 39 46 chr13 54141134 54141524 -65603374 + L1M4 LINE L1 2051 2442 -4202 1510 206 11 7 chr13 54141524 54141835 -65603063 + AluJo SINE Alu 1 312 0 3365 267 39 46 chr13 54141835 54142270 -65602628 + L1M4 LINE L1 2442 2878 -3766 1995 128 17 0 chr13 54142270 54142560 -65602338 + AluSx SINE Alu 1 295 -17 3365 267 39 46 chr13 54142560 54143308 -65601590 + L1M4 LINE L1 2878 3560 -3084 1718 180 0 26 chr13 54143308 54143613 -65601285 + AluSx SINE Alu 3 299 -13 3365 267 39 46 chr13 54143613 54144106 -65600792 + L1M4 LINE L1 3560 4055 -2589 2208 96 3 0 chr13 54144106 54144388 -65600510 - AluSq SINE Alu -19 294 12 2212 140 39 3 chr13 54144489 54144874 -65600024 - Tigger3b DNA MER2_type -577 654 256 26 0 0 0 chr13 54145486 54145512 -65599386 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr13 54145962 54145997 -65598901 + AT_rich Low_complexity Low_complexity 1 35 0 456 322 33 41 chr13 54146642 54146887 -65598011 + MIR SINE MIR 19 261 -1 309 245 0 0 chr13 54147843 54147945 -65596953 + CT-rich Low_complexity Low_complexity 3 104 0 351 276 108 63 chr13 54148014 54148200 -65596698 - MLT1L LTR MaLR -31 584 408 1975 134 24 46 chr13 54148200 54148572 -65596326 + THE1B LTR MaLR 1 364 0 351 276 108 63 chr13 54148572 54148759 -65596139 - MLT1L LTR MaLR -207 408 110 970 227 129 98 chr13 54150066 54150546 -65594352 + MLT1D-int LTR MaLR 877 1371 0 1196 269 80 23 chr13 54150546 54151022 -65593876 + MLT1D LTR MaLR 1 503 -2 1067 210 44 0 chr13 54151036 54151241 -65593657 + AluJb SINE Alu 87 300 -12 1252 252 104 68 chr13 54151417 54152275 -65592623 + L1MC/D LINE L1 4264 5152 -994 450 162 0 0 chr13 54152287 54152355 -65592543 + Tigger2 DNA MER2_type 1 68 -2650 * 2182 146 36 36 chr13 54152346 54152792 -65592106 + Tigger2 DNA MER2_type 2273 2718 0 456 213 8 8 chr13 54152792 54152914 -65591984 + L1MC/D LINE L1 5361 5482 -760 266 89 44 0 chr13 54153021 54153066 -65591832 - AluJ/FLAM SINE Alu -244 58 12 3323 244 43 21 chr13 54153081 54153829 -65591069 + L1M4 LINE L1 4046 4833 -1811 1230 242 35 0 chr13 54153829 54154114 -65590784 + AluJo SINE Alu 3 297 -15 3323 244 43 21 chr13 54154114 54154560 -65590338 + L1M4 LINE L1 4833 5267 -1377 186 43 0 0 chr13 54154561 54154584 -65590314 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9486 196 9 17 chr13 54154591 54156311 -65588587 + L1P4 LINE L1 16 1722 -5127 11305 224 22 27 chr13 54156315 54157177 -65587721 + L1P4 LINE L1 2879 3744 -3125 1666 212 0 0 chr13 54157177 54157479 -65587419 + AluJb SINE Alu 1 302 -10 11305 224 22 27 chr13 54157479 54157770 -65587128 + L1P4 LINE L1 3744 4035 -2834 1964 157 0 0 chr13 54157770 54158057 -65586841 + AluSx SINE Alu 1 287 -25 213 39 0 0 chr13 54158061 54158087 -65586811 + (CAA)n Simple_repeat Simple_repeat 2 27 0 11305 224 22 27 chr13 54158087 54160207 -65584691 + L1P4 LINE L1 4038 6139 -730 965 155 0 58 chr13 54160532 54160739 -65584159 - L1MA4A LINE L1 -5 6298 6104 5357 164 21 5 chr13 54160748 54161685 -65583213 + L1P LINE L1 11 962 -5184 8730 78 0 0 chr13 54161699 54162825 -65582073 - HERVK9 LTR ERVK -3166 2750 1625 4333 106 10 32 chr13 54162825 54163502 -65581396 - HERVK9 LTR ERVK -5254 662 1 1552 138 105 14 chr13 54163502 54163798 -65581100 - MER9 LTR ERVK 0 511 189 16348 84 1 7 chr13 54163799 54166090 -65578808 + L1P LINE L1 2459 4734 -1412 333 0 0 0 chr13 54167055 54167092 -65577806 + (TA)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr13 54167328 54167358 -65577540 + AT_rich Low_complexity Low_complexity 1 30 0 333 0 0 0 chr13 54167552 54167589 -65577309 + (TTA)n Simple_repeat Simple_repeat 2 38 0 10167 233 64 32 chr13 54167589 54170953 -65573945 - L1MB1 LINE L1 -11 5981 2725 2819 187 70 36 chr13 54170953 54171712 -65573186 + LTR1 LTR ERV1 1 785 0 1613 119 16 0 chr13 54171712 54171963 -65572935 - AluSx SINE Alu -57 255 1 10167 233 64 32 chr13 54171963 54174003 -65570895 - L1MB1 LINE L1 -3267 2725 716 279 0 0 0 chr13 54174003 54174034 -65570864 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10167 233 64 32 chr13 54174034 54174773 -65570125 - L1MB1 LINE L1 -5276 716 2 1844 130 11 7 chr13 54175346 54175631 -65569267 + AluSx SINE Alu 1 286 -26 2333 90 3 0 chr13 54175673 54175983 -65568915 + AluY SINE Alu 1 311 0 25 51 0 0 chr13 54176689 54176728 -65568170 + AT_rich Low_complexity Low_complexity 1 39 0 2122 138 0 0 chr13 54177210 54177522 -65567376 + AluSx SINE Alu 1 312 0 378 20 41 0 chr13 54177543 54177592 -65567306 - AluY SINE Alu -8 294 244 1391 38 0 0 chr13 54177592 54177750 -65567148 - AluY SINE Alu -144 167 10 34 24 0 0 chr13 54177772 54177813 -65567085 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 54178274 54178299 -65566599 + AT_rich Low_complexity Low_complexity 1 25 0 897 325 49 41 chr13 54178332 54178910 -65565988 - L2 LINE L2 -26 3287 2700 1382 188 17 31 chr13 54178910 54179203 -65565695 + AluJo SINE Alu 1 289 -23 897 325 49 41 chr13 54179203 54179308 -65565590 - L2 LINE L2 -613 2700 2597 523 318 124 22 chr13 54181246 54181561 -65563337 + MLT1J1 LTR MaLR 99 445 -1 23 0 0 0 chr13 54182052 54182075 -65562823 + AT_rich Low_complexity Low_complexity 1 23 0 4073 189 13 8 chr13 54182138 54182971 -65561927 + L1MC1 LINE L1 5491 6327 -6 324 102 0 0 chr13 54182974 54183023 -65561875 + (CA)n Simple_repeat Simple_repeat 2 50 0 1546 274 132 23 chr13 54184485 54185181 -65559717 - L1ME3A LINE L1 -22 6148 5377 9671 197 28 73 chr13 54185200 54186587 -65558311 - LTR48B-int LTR ERV1 -2532 3799 2576 2320 72 3 3 chr13 54186587 54186880 -65558018 - AluSg SINE Alu -17 293 1 9671 197 28 73 chr13 54186880 54188033 -65556865 - LTR48B-int LTR ERV1 -3755 2576 1373 359 153 0 59 chr13 54188117 54188202 -65556696 - LTR48B-int LTR ERV1 -4953 1378 1299 * 2855 169 37 58 chr13 54188201 54189307 -65555591 - LTR48B-int LTR ERV1 -3264 1616 1 1776 231 96 38 chr13 54189310 54189917 -65554981 - LTR48B LTR ERV1 -1 643 2 749 133 215 0 chr13 54189920 54190078 -65554820 - L1MB1 LINE L1 -81 6108 5917 199 356 8 42 chr13 54190771 54190807 -65554091 + MIR SINE MIR 32 68 -140 1867 158 6 3 chr13 54190807 54191118 -65553780 - AluJb SINE Alu 0 312 1 199 356 8 42 chr13 54191118 54191199 -65553699 + MIR SINE MIR 68 145 -63 215 0 0 62 chr13 54191266 54191298 -65553600 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 22 35 0 0 chr13 54191338 54191367 -65553531 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr13 54191614 54191645 -65553253 + AT_rich Low_complexity Low_complexity 1 31 0 504 299 89 41 chr13 54191742 54192033 -65552865 - MLT1I LTR MaLR -42 367 63 193 197 30 0 chr13 54193232 54193298 -65551600 + CT-rich Low_complexity Low_complexity 2 69 0 22 0 0 0 chr13 54193329 54193351 -65551547 + AT_rich Low_complexity Low_complexity 1 22 0 2136 111 7 19 chr13 54195893 54196200 -65548698 - AluSx SINE Alu -9 303 1 37 23 0 0 chr13 54196215 54196259 -65548639 + AT_rich Low_complexity Low_complexity 1 44 0 379 314 76 81 chr13 54197383 54197753 -65547145 + MLT1K LTR MaLR 208 575 -13 499 261 79 30 chr13 54197789 54198118 -65546780 + L1MC4 LINE L1 7695 8039 -3 1082 214 0 0 chr13 54199400 54199601 -65545297 - AluJo SINE Alu -25 287 87 212 218 0 36 chr13 54199688 54199743 -65545155 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr13 54199970 54199991 -65544907 + AT_rich Low_complexity Low_complexity 1 21 0 1351 226 32 32 chr13 54200212 54200557 -65544341 - MLT1A1 LTR MaLR 0 365 21 1338 186 83 11 chr13 54200560 54200872 -65544026 - MER61B LTR ERV1 0 425 1 290 80 20 0 chr13 54202547 54202597 -65542301 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1815 127 62 4 chr13 54202599 54202874 -65542024 - AluSx SINE Alu -21 291 1 2795 7 0 0 chr13 54203628 54203934 -65540964 + AluYa5 SINE Alu 1 306 -5 21 0 0 0 chr13 54205443 54205464 -65539434 + AT_rich Low_complexity Low_complexity 1 21 0 3189 147 0 0 chr13 54205944 54206441 -65538457 + LOR1a LTR ERV1 1 497 0 28 0 0 0 chr13 54207942 54207970 -65536928 + AT_rich Low_complexity Low_complexity 1 28 0 827 233 6 6 chr13 54208229 54208405 -65536493 - FRAM SINE Alu -1 175 1 214 50 50 0 chr13 54208406 54208446 -65536452 + (TA)n Simple_repeat Simple_repeat 2 43 0 540 308 115 36 chr13 54209081 54209412 -65535486 - L2 LINE L2 -2 3311 2955 27 29 0 0 chr13 54209784 54209818 -65535080 + AT_rich Low_complexity Low_complexity 1 34 0 9360 162 37 15 chr13 54209818 54212795 -65532103 - L1MA3 LINE L1 0 6305 3260 2108 120 3 3 chr13 54212798 54213097 -65531801 - AluSq SINE Alu -8 305 7 9344 119 25 32 chr13 54213099 54214511 -65530387 - L1M1 LINE L1 -3924 3641 2252 1496 209 7 3 chr13 54214511 54214807 -65530091 + AluJb SINE Alu 1 297 -15 9344 119 25 32 chr13 54214807 54215043 -65529855 - L1M1 LINE L1 -5313 2252 2016 680 144 8 76 chr13 54215037 54215169 -65529729 + L1M1 LINE L1 481 603 -6962 * 1868 152 32 7 chr13 54215175 54215485 -65529413 - L1M1 LINE L1 -5551 2014 1697 * 4608 186 11 36 chr13 54215483 54216360 -65528538 - L1M1 LINE L1 -6702 863 9 22 0 0 0 chr13 54216655 54216677 -65528221 + AT_rich Low_complexity Low_complexity 1 22 0 1675 257 32 25 chr13 54216902 54217551 -65527347 - L1MEc LINE L1 -4122 2274 1621 1535 237 24 44 chr13 54217566 54217979 -65526919 + MSTB1 LTR MaLR 1 405 -27 499 273 97 0 chr13 54217980 54218134 -65526764 - FAM SINE Alu -5 170 2 698 85 11 0 chr13 54218154 54218248 -65526650 - AluSq/x SINE Alu -179 133 39 286 27 27 0 chr13 54218249 54218286 -65526612 + MSTB1 LTR MaLR 395 432 0 30 0 0 0 chr13 54218309 54218339 -65526559 + AT_rich Low_complexity Low_complexity 1 30 0 2131 94 16 26 chr13 54218388 54218697 -65526201 - AluY SINE Alu -3 308 3 248 375 27 9 chr13 54218973 54219085 -65525813 - MER81 DNA DNA 0 114 1 2998 282 51 19 chr13 54219087 54220291 -65524607 - L1MEc LINE L1 -5125 1271 30 2185 120 3 0 chr13 54220355 54220654 -65524244 + AluSp SINE Alu 1 300 -13 557 311 128 45 chr13 54221184 54221631 -65523267 + MLT1J LTR MaLR 28 511 0 21 0 0 0 chr13 54223305 54223326 -65521572 + AT_rich Low_complexity Low_complexity 1 21 0 3680 264 75 80 chr13 54223353 54227615 -65517283 + L1MC/D LINE L1 6 4426 -2000 330 141 16 0 chr13 54227615 54227679 -65517219 + L1PA16 LINE L1 6102 6166 0 3680 264 75 80 chr13 54227679 54228802 -65516096 + L1MC/D LINE L1 4426 5553 -873 26 30 0 0 chr13 54229131 54229164 -65515734 + AT_rich Low_complexity Low_complexity 1 33 0 1283 178 119 3 chr13 54229167 54229453 -65515445 + L1MC/D LINE L1 5662 5980 -633 2342 86 0 3 chr13 54229545 54229846 -65515052 - AluSq SINE Alu -13 300 1 268 243 95 74 chr13 54230091 54230239 -65514659 + L2 LINE L2 3159 3309 -4 326 294 129 18 chr13 54230259 54230429 -65514469 - MER5A DNA MER1_type 0 189 1 233 153 0 34 chr13 54230889 54230948 -65513950 + (TTATA)n Simple_repeat Simple_repeat 4 60 0 2072 127 0 0 chr13 54232128 54232427 -65512471 + AluY SINE Alu 1 299 -12 441 169 0 0 chr13 54233637 54233720 -65511178 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 34 78 0 0 chr13 54233965 54234029 -65510869 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr13 54234118 54234141 -65510757 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr13 54235759 54235795 -65509103 + AT_rich Low_complexity Low_complexity 1 36 0 1765 205 87 11 chr13 54235855 54236235 -65508663 + L1P3 LINE L1 36 444 -5431 736 168 15 0 chr13 54236256 54236387 -65508511 + L1 LINE L1 4844 4976 -1170 685 242 215 44 chr13 54236589 54236876 -65508022 - L1MEc LINE L1 -2764 3451 3214 2253 88 10 3 chr13 54236876 54237184 -65507714 - AluY SINE Alu -1 310 1 685 242 215 44 chr13 54237184 54237377 -65507521 - L1MEc LINE L1 -3001 3214 3055 2133 99 0 0 chr13 54237377 54237693 -65507205 - AluSg SINE Alu 0 316 1 685 242 215 44 chr13 54237693 54237801 -65507097 - L1MEc LINE L1 -3160 3055 2760 789 232 150 29 chr13 54237913 54238322 -65506576 - L1MEc LINE L1 -3625 2590 2162 1833 108 17 61 chr13 54238322 54238663 -65506235 - AluSx SINE Alu 0 328 1 789 232 150 29 chr13 54238663 54238729 -65506169 - L1MEc LINE L1 -4053 2162 2105 742 240 24 10 chr13 54238748 54238956 -65505942 - L1MD3 LINE L1 -8 7987 7777 466 288 7 7 chr13 54238977 54239116 -65505782 - L1MEc LINE L1 -4580 1816 1678 786 161 88 20 chr13 54239202 54239439 -65505459 + L1MCa LINE L1 2269 2560 -3950 494 303 53 54 chr13 54239615 54240049 -65504849 - L1M2a LINE L1 -5328 883 10 2270 66 0 26 chr13 54241288 54241591 -65503307 + AluY SINE Alu 1 295 -16 1629 137 109 11 chr13 54241645 54241929 -65502969 + AluJb SINE Alu 1 312 0 326 41 0 41 chr13 54241932 54241981 -65502917 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 188 347 116 0 chr13 54242346 54242441 -65502457 + L2 LINE L2 2957 3062 -251 29 47 0 0 chr13 54243537 54243580 -65501318 + AT_rich Low_complexity Low_complexity 1 43 0 291 345 34 47 chr13 54243806 54243954 -65500944 + L2 LINE L2 3122 3267 -5 426 344 31 18 chr13 54244253 54244477 -65500421 - L1M4 LINE L1 -743 5403 5177 748 282 95 12 chr13 54245709 54245950 -65498948 + MIR SINE MIR 2 262 0 596 303 5 21 chr13 54246666 54246854 -65498044 - MIR SINE MIR -48 214 30 378 0 0 0 chr13 54246858 54246900 -65497998 + (TG)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr13 54247084 54247109 -65497789 + AT_rich Low_complexity Low_complexity 1 25 0 433 373 39 39 chr13 54248272 54248661 -65496237 - L2 LINE L2 -525 2789 2401 263 59 0 0 chr13 54249784 54249818 -65495080 + HERVL LTR ERVL 238 271 -5383 183 42 0 0 chr13 54250523 54250547 -65494351 + (TA)n Simple_repeat Simple_repeat 2 25 0 2026 130 10 0 chr13 54250599 54250907 -65493991 + AluSx SINE Alu 1 311 -1 42 36 0 0 chr13 54251287 54251343 -65493555 + AT_rich Low_complexity Low_complexity 1 56 0 270 106 0 0 chr13 54251411 54251458 -65493440 + (CAATT)n Simple_repeat Simple_repeat 3 49 0 25 51 0 0 chr13 54252208 54252247 -65492651 + AT_rich Low_complexity Low_complexity 1 39 0 187 345 0 12 chr13 54253041 54253125 -65491773 + L2 LINE L2 3141 3223 -90 1033 335 75 13 chr13 54253609 54254083 -65490815 + L2 LINE L2 2779 3283 -30 1827 157 26 3 chr13 54256714 54257058 -65487840 + L1MA5 LINE L1 5949 6300 0 25 90 0 0 chr13 54257113 54257180 -65487718 + AT_rich Low_complexity Low_complexity 1 67 0 24 32 0 0 chr13 54257326 54257357 -65487541 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 54258016 54258039 -65486859 + AT_rich Low_complexity Low_complexity 1 23 0 285 197 8 49 chr13 54258063 54258185 -65486713 + (TAAA)n Simple_repeat Simple_repeat 2 118 0 22 35 0 0 chr13 54258251 54258280 -65486618 + AT_rich Low_complexity Low_complexity 1 29 0 281 235 61 10 chr13 54258494 54258592 -65486306 - LTR16A LTR ERVL -105 345 243 1048 161 0 0 chr13 54258594 54258762 -65486136 - AluSq SINE Alu -10 303 136 494 118 0 0 chr13 54258766 54258842 -65486056 + AluSq/x SINE Alu 39 114 -199 249 57 0 0 chr13 54259967 54260002 -65484896 + (TG)n Simple_repeat Simple_repeat 1 35 0 2000 190 67 9 chr13 54260667 54261103 -65483795 + LOR1b LTR ERV1 1 461 0 273 221 38 139 chr13 54261771 54261929 -65482969 - L1ME2 LINE L1 -21 6143 6002 2465 186 31 69 chr13 54261987 54262595 -65482303 + MER34C LTR ERV1 1 585 0 340 193 157 0 chr13 54262597 54262680 -65482218 - L1ME2 LINE L1 -205 5959 5864 2383 175 110 69 chr13 54263178 54263876 -65481022 - LTR8A LTR ERV1 0 727 1 1059 275 64 43 chr13 54263891 54264328 -65480570 + LTR16A1 LTR ERVL 4 449 -8 3158 150 19 15 chr13 54264497 54265085 -65479813 - LTR49 LTR ERV1 -3 592 3 205 281 16 49 chr13 54265101 54265286 -65479612 + T-rich Low_complexity Low_complexity 2 180 0 838 128 0 15 chr13 54265433 54265566 -65479332 + MER41C LTR ERV1 1 131 -423 * 966 180 95 5 chr13 54265557 54265768 -65479130 + LTR1B LTR ERV1 597 826 0 1432 242 81 5 chr13 54266005 54266369 -65478529 + MLT2B1 LTR ERVL 1 397 -67 1005 148 25 6 chr13 54266419 54266581 -65478317 - LTR29 LTR ERV1 -3 619 455 1921 191 5 23 chr13 54266584 54266971 -65477927 - MER67D LTR ERV1 -123 391 12 368 283 9 35 chr13 54267260 54267373 -65477525 - MIR3 SINE MIR -39 169 60 4620 139 60 36 chr13 54267958 54268840 -65476058 + MER4D LTR ERV1 1 903 0 2214 124 14 30 chr13 54268887 54269257 -65475641 - THE1B LTR MaLR 0 364 1 11471 100 2 1 chr13 54269257 54270834 -65474064 - THE1B-int LTR MaLR 0 1580 1 2106 136 8 37 chr13 54270834 54271209 -65473689 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr13 54271263 54271291 -65473607 + AT_rich Low_complexity Low_complexity 1 28 0 215 206 0 44 chr13 54271883 54271951 -65472947 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1296 133 10 0 chr13 54272179 54272382 -65472516 - MER54B LTR ERVL -1 792 588 815 224 12 0 chr13 54272374 54272539 -65472359 - MER54B LTR ERVL -515 278 112 * 1318 217 93 3 chr13 54272539 54272938 -65471960 + MER66A LTR ERV1 1 478 0 708 179 9 0 chr13 54272938 54273050 -65471848 - MER54B LTR ERVL -678 115 3 2332 94 0 0 chr13 54273230 54273527 -65471371 - AluY SINE Alu -14 297 1 28 79 0 0 chr13 54273762 54273825 -65471073 + AT_rich Low_complexity Low_complexity 1 63 0 21 71 0 0 chr13 54274105 54274147 -65470751 + AT_rich Low_complexity Low_complexity 1 42 0 7884 112 4 4 chr13 54274155 54275327 -65469571 + L1P LINE L1 1726 2897 -3249 21 0 0 0 chr13 54275494 54275515 -65469383 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr13 54275562 54275626 -65469272 + AT_rich Low_complexity Low_complexity 1 64 0 68 42 0 0 chr13 54275713 54275809 -65469089 + AT_rich Low_complexity Low_complexity 1 96 0 1622 223 54 82 chr13 54276365 54277343 -65467555 - L1MD2 LINE L1 -13 6346 5245 4762 100 43 35 chr13 54277343 54278116 -65466782 - LTR19C LTR ERV1 0 779 1 1622 223 54 82 chr13 54278116 54278690 -65466208 - L1MD2 LINE L1 -1114 5245 4657 21 36 0 0 chr13 54279216 54279244 -65465654 + AT_rich Low_complexity Low_complexity 1 28 0 1275 192 80 17 chr13 54279533 54279820 -65465078 - AluJb SINE Alu -7 305 1 2090 125 0 7 chr13 54279908 54280205 -65464693 + AluSg SINE Alu 1 295 -15 1121 200 4 0 chr13 54280227 54280457 -65464441 + L1 LINE L1 4507 4737 -1409 686 215 6 35 chr13 54280644 54280816 -65464082 - MER3 DNA MER1_type -41 168 2 180 328 52 0 chr13 54280930 54280988 -65463910 - L2 LINE L2 -248 3065 3005 262 396 29 0 chr13 54281116 54281255 -65463643 - L2 LINE L2 -441 2873 2731 1767 178 18 12 chr13 54281623 54281955 -65462943 + MLT1B LTR MaLR 57 390 0 28 71 0 0 chr13 54282027 54282083 -65462815 + AT_rich Low_complexity Low_complexity 1 56 0 35 71 0 0 chr13 54282121 54282191 -65462707 + AT_rich Low_complexity Low_complexity 1 70 0 525 154 0 0 chr13 54282597 54282688 -65462210 - L1MA8 LINE L1 -12 6279 6189 2668 7 0 3 chr13 54283688 54283985 -65460913 - AluYa5 SINE Alu -15 296 1 186 206 111 16 chr13 54284317 54284380 -65460518 + MIR SINE MIR 84 152 -110 1130 234 60 18 chr13 54284484 54284766 -65460132 + AluJo SINE Alu 1 294 -8 3054 221 42 11 chr13 54284918 54285030 -65459868 - L1MA9 LINE L1 -38 6274 6167 198 118 0 0 chr13 54285030 54285064 -65459834 + (TG)n Simple_repeat Simple_repeat 1 34 0 3054 221 42 11 chr13 54285064 54285713 -65459185 - L1MA9 LINE L1 -145 6167 5489 5791 60 14 36 chr13 54285713 54286511 -65458387 - LTR17 LTR ERV1 0 780 1 2362 52 14 0 chr13 54286511 54286799 -65458099 - HERV17 LTR ERV1 0 8626 8335 294 51 0 0 chr13 54286789 54286828 -65458070 - HERV17 LTR ERV1 -1078 7548 7510 * 3978 45 4 0 chr13 54286821 54287304 -65457594 - HERV17 LTR ERV1 -2607 6019 5535 548 0 0 0 chr13 54287301 54287362 -65457536 - HERV17 LTR ERV1 -3026 5600 5540 * 6105 38 19 0 chr13 54287347 54288090 -65456808 - HERV17 LTR ERV1 -2926 5700 4944 429 349 77 10 chr13 54289000 54289195 -65455703 + MIR SINE MIR 31 238 -24 1824 154 0 4 chr13 54289351 54289653 -65455245 - AluSx SINE Alu 0 312 20 1257 256 54 31 chr13 54289788 54290175 -65454723 + MSTD LTR MaLR 1 396 0 5490 248 98 44 chr13 54290178 54291822 -65453076 + MSTD-int LTR MaLR 2 1735 0 5041 107 7 13 chr13 54291863 54292618 -65452280 + L1PB2 LINE L1 5400 6149 -2 201 39 0 0 chr13 54292628 54292654 -65452244 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 981 278 126 12 chr13 54292666 54293000 -65451898 + MSTD LTR MaLR 25 396 0 288 154 0 0 chr13 54293597 54293649 -65451249 + (TA)n Simple_repeat Simple_repeat 2 53 0 204 40 0 0 chr13 54293685 54293710 -65451188 + (TG)n Simple_repeat Simple_repeat 2 26 0 989 154 22 22 chr13 54294644 54294826 -65450072 - MER61A LTR ERV1 0 343 162 21 36 0 0 chr13 54294864 54294892 -65450006 + AT_rich Low_complexity Low_complexity 1 28 0 1779 269 161 37 chr13 54295051 54296195 -65448703 + L1MC4a LINE L1 5794 7079 -729 2396 118 16 11 chr13 54296405 54296778 -65448120 + THE1C LTR MaLR 1 375 0 9218 118 29 67 chr13 54296778 54298421 -65446477 + THE1C-int LTR MaLR 1 1580 0 2085 161 14 6 chr13 54298421 54298782 -65446116 + THE1C LTR MaLR 1 364 -11 1055 174 30 25 chr13 54298760 54298961 -65445937 + MER67C LTR ERV1 202 403 -307 * 318 186 41 21 chr13 54299127 54299224 -65445674 + L1MC4a LINE L1 7164 7262 -546 187 420 0 0 chr13 54301917 54301998 -65442900 + MIR SINE MIR 50 130 -78 498 130 0 0 chr13 54303748 54303825 -65441073 + L1PA12 LINE L1 6076 6152 -16 221 327 107 24 chr13 54304227 54304408 -65440490 - MIR3 SINE MIR -33 229 35 186 43 0 0 chr13 54304868 54304891 -65440007 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 2367 78 7 0 chr13 54304909 54305215 -65439683 + AluY SINE Alu 1 308 -3 186 133 0 0 chr13 54305235 54305265 -65439633 + (A)n Simple_repeat Simple_repeat 1 30 0 683 221 28 11 chr13 54306703 54306884 -65438014 + L1MA8 LINE L1 6067 6250 -41 2160 142 0 0 chr13 54306929 54307232 -65437666 + AluSx SINE Alu 1 303 -9 964 207 13 30 chr13 54307862 54308099 -65436799 + AluJo SINE Alu 50 282 -30 208 333 0 0 chr13 54308517 54308568 -65436330 + L2 LINE L2 3217 3267 -5 21 82 0 0 chr13 54308862 54308911 -65435987 + AT_rich Low_complexity Low_complexity 1 49 0 520 239 99 0 chr13 54308972 54309017 -65435881 - L1MA10 LINE L1 -3 6331 6252 294 29 0 0 chr13 54309017 54309052 -65435846 + (TA)n Simple_repeat Simple_repeat 2 36 0 1814 267 50 35 chr13 54309052 54310508 -65434390 - L1ME1 LINE L1 -50 6185 4677 3973 228 46 26 chr13 54310901 54311957 -65432941 + Tigger6a DNA MER2_type 6 1083 0 335 253 84 76 chr13 54312041 54312290 -65432608 - L1ME1 LINE L1 -2885 3330 3080 34 0 0 0 chr13 54312312 54312346 -65432552 + AT_rich Low_complexity Low_complexity 1 34 0 313 209 90 0 chr13 54312821 54312888 -65432010 - LTR33A LTR ERVL -5 518 446 389 244 38 50 chr13 54314567 54314727 -65430171 + MER104 DNA Tc2 19 176 -4 227 320 78 23 chr13 54314736 54314864 -65430034 - MIR SINE MIR -109 153 19 22 0 0 0 chr13 54315459 54315481 -65429417 + AT_rich Low_complexity Low_complexity 1 22 0 1408 217 3 7 chr13 54315482 54315768 -65429130 - AluJo SINE Alu -24 288 4 215 31 31 0 chr13 54316012 54316044 -65428854 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 252 279 0 0 chr13 54316236 54316297 -65428601 - L2 LINE L2 -12 3301 3241 188 132 0 26 chr13 54316578 54316586 -65428312 + (TG)n Simple_repeat Simple_repeat 2 9 -29 1785 146 29 38 chr13 54316586 54316901 -65427997 + AluSx SINE Alu 1 312 0 188 132 0 26 chr13 54316901 54316930 -65427968 + (TG)n Simple_repeat Simple_repeat 9 38 0 2287 96 0 0 chr13 54316943 54317246 -65427652 - AluSx SINE Alu -9 303 1 477 0 0 0 chr13 54317294 54317347 -65427551 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 27 29 0 0 chr13 54317438 54317472 -65427426 + AT_rich Low_complexity Low_complexity 1 34 0 2482 63 0 0 chr13 54317554 54317873 -65427025 - L1PA5 LINE L1 -6 6148 5830 456 104 0 0 chr13 54317975 54318042 -65426856 + (CA)n Simple_repeat Simple_repeat 2 68 0 238 48 95 24 chr13 54318042 54318084 -65426814 + MLT2A2 LTR ERVL 409 453 0 346 302 70 80 chr13 54318322 54318696 -65426202 - L2 LINE L2 -787 2527 2158 2096 116 51 40 chr13 54320350 54320720 -65424178 + THE1C LTR MaLR 1 374 -1 469 202 20 0 chr13 54320940 54321039 -65423859 + FRAM SINE Alu 61 161 -15 671 309 81 29 chr13 54322050 54322845 -65422053 - L1ME1 LINE L1 -3875 2521 1686 260 238 24 0 chr13 54322897 54322981 -65421917 - L1ME1 LINE L1 -5266 939 854 514 335 68 49 chr13 54323409 54323862 -65421036 - L1ME1 LINE L1 -5597 608 147 369 238 76 23 chr13 54323871 54324043 -65420855 - MER113 DNA MER1_type? -304 217 37 304 240 30 50 chr13 54324480 54324580 -65420318 + MIR SINE MIR 131 228 -34 2071 113 0 27 chr13 54324926 54325227 -65419671 + AluSg SINE Alu 1 293 -17 24 77 0 0 chr13 54326077 54326129 -65418769 + AT_rich Low_complexity Low_complexity 1 52 0 29 60 0 0 chr13 54326375 54326425 -65418473 + AT_rich Low_complexity Low_complexity 1 50 0 585 76 0 0 chr13 54327157 54327236 -65417662 + (TTC)n Simple_repeat Simple_repeat 1 79 0 509 370 74 21 chr13 54329460 54329974 -65414924 - L2 LINE L2 -1606 1708 1168 694 271 83 41 chr13 54330079 54330345 -65414553 - MLT1C LTR MaLR 0 467 191 2817 168 29 8 chr13 54330375 54331041 -65413857 + L1P5 LINE L1 5100 5775 -379 3196 84 35 0 chr13 54331300 54331730 -65413168 - MLT2A2 LTR ERVL -8 445 1 306 223 0 106 chr13 54332150 54332244 -65412654 - HAL1b LINE L1 -472 876 793 28 86 0 0 chr13 54332388 54332458 -65412440 + AT_rich Low_complexity Low_complexity 1 70 0 698 226 58 13 chr13 54332832 54333022 -65411876 + L1M2 LINE L1 5297 5492 -743 5687 65 15 36 chr13 54333022 54333819 -65411079 + LTR17 LTR ERV1 1 780 0 25051 57 12 11 chr13 54333819 54337056 -65407842 + HERV17 LTR ERV1 1 3241 -5385 383 197 61 0 chr13 54537100 54537166 -65207732 + Tigger3(Golem) DNA MER2_type 1 70 -2959 1014 212 36 5 chr13 54537201 54537423 -65207475 + Tigger3(Golem) DNA MER2_type 2801 3029 0 22 0 0 0 chr13 54539228 54539250 -65205648 + AT_rich Low_complexity Low_complexity 1 22 0 235 321 0 25 chr13 54539564 54539645 -65205253 - L3 LINE CR1 -11 1566 1488 9939 103 13 1 chr13 54540152 54541536 -65203362 - HERVL LTR ERVL -1052 4602 3203 12692 83 9 1 chr13 54541636 54543313 -65201585 - HERVL LTR ERVL -3009 2645 955 1688 122 8 4 chr13 54543314 54543560 -65201338 + AluSp SINE Alu 1 247 -66 6434 158 34 4 chr13 54543660 54544803 -65200095 - Tigger3b DNA MER2_type -26 1205 29 27 29 0 0 chr13 54544815 54544849 -65200049 + AT_rich Low_complexity Low_complexity 1 34 0 682 166 83 24 chr13 54545212 54545381 -65199517 + MER53 DNA DNA 1 179 -10 32 43 0 0 chr13 54546108 54546154 -65198744 + AT_rich Low_complexity Low_complexity 1 46 0 2044 135 0 0 chr13 54546290 54546578 -65198320 - AluSq SINE Alu -25 288 1 503 317 49 0 chr13 54546646 54546829 -65198069 - MIR SINE MIR -36 226 35 931 267 78 45 chr13 54547319 54547678 -65197220 + MLT1E2 LTR MaLR 51 421 -205 1520 112 22 4 chr13 54547679 54547727 -65197171 - MLT2A1 LTR ERVL 0 444 398 318 26 0 0 chr13 54547727 54547766 -65197132 + (CA)n Simple_repeat Simple_repeat 2 40 0 1520 112 22 4 chr13 54547766 54547949 -65196949 - MLT2A1 LTR ERVL -46 398 209 25 51 0 0 chr13 54549211 54549250 -65195648 + AT_rich Low_complexity Low_complexity 1 39 0 617 80 140 0 chr13 54549987 54550087 -65194811 + LTR9B LTR ERV1 447 560 -84 198 0 0 0 chr13 54550087 54550109 -65194789 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 25 0 0 0 chr13 54550125 54550150 -65194748 + AT_rich Low_complexity Low_complexity 1 25 0 295 211 0 0 chr13 54550998 54551050 -65193848 + Tigger5 DNA MER2_type 1 52 -2271 524 174 10 20 chr13 54551051 54551149 -65193749 + Tigger5 DNA MER2_type 2227 2323 0 297 234 0 16 chr13 54551174 54551238 -65193660 - Tigger7 DNA MER2_type 0 2487 2425 652 206 38 0 chr13 54551240 54551371 -65193527 + MER46A DNA MER2_type 101 236 0 * 1000 124 40 40 chr13 54551371 54551571 -65193327 - Tigger7 DNA MER2_type -85 2402 2203 911 218 6 6 chr13 54551570 54551740 -65193158 - Tigger7 DNA MER2_type -535 170 1 * 22 0 0 0 chr13 54552172 54552194 -65192704 + AT_rich Low_complexity Low_complexity 1 22 0 215 132 38 19 chr13 54552417 54552470 -65192428 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 2398 70 0 3 chr13 54553011 54553313 -65191585 + AluY SINE Alu 3 303 -8 245 325 178 12 chr13 54553459 54553628 -65191270 - MIR SINE MIR -1 261 65 854 275 67 4 chr13 54553741 54553981 -65190917 - MIR SINE MIR -6 256 2 1374 205 55 0 chr13 54555113 54555386 -65189512 - AluJo SINE Alu -24 288 1 5672 225 18 21 chr13 54555513 54555615 -65189283 + L1 LINE L1 1893 1994 -4152 5169 168 22 32 chr13 54555615 54556693 -65188205 - MER11C LTR ERVK -4 1067 1 5672 225 18 21 chr13 54556693 54556789 -65188109 + L1 LINE L1 1994 2089 -4057 192 40 0 0 chr13 54556789 54556814 -65188084 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5672 225 18 21 chr13 54556814 54558256 -65186642 + L1 LINE L1 2089 3517 -2629 2031 132 95 72 chr13 54558263 54558877 -65186021 + L1MA4A LINE L1 5419 5788 -363 303 28 0 0 chr13 54558692 54558728 -65186170 + (CA)n Simple_repeat Simple_repeat 2 37 0 2253 112 3 12 chr13 54558728 54559055 -65185843 + L1PB1 LINE L1 5792 6117 -34 2618 209 35 5 chr13 54559155 54559748 -65185150 + L1 LINE L1 4671 5281 -865 607 205 66 0 chr13 54559748 54559870 -65185028 + MER54B LTR ERVL 551 680 -113 359 338 15 48 chr13 54560991 54561199 -65183699 - MIR3 SINE MIR -8 200 2 2166 91 7 23 chr13 54562389 54562697 -65182201 - AluY SINE Alu -8 303 1 329 321 123 20 chr13 54562896 54563246 -65181652 - L1MC/D LINE L1 -553 5625 5386 201 94 0 0 chr13 54563463 54563495 -65181403 + (TG)n Simple_repeat Simple_repeat 1 32 0 233 270 71 36 chr13 54564548 54564800 -65180098 + L1MEd LINE L1 940 1200 -4919 246 294 29 10 chr13 54564906 54565008 -65179890 + L1MEd LINE L1 1269 1372 -4759 7821 261 50 21 chr13 54565630 54566276 -65178622 + L1PA13 LINE L1 2 627 -6170 2135 113 41 39 chr13 54566276 54566639 -65178259 + THE1B LTR MaLR 1 364 0 7821 261 50 21 chr13 54566639 54568679 -65176219 + L1PA13 LINE L1 627 2816 -3981 25 0 0 0 chr13 54569024 54569049 -65175849 + AT_rich Low_complexity Low_complexity 1 25 0 2469 48 3 6 chr13 54569056 54569368 -65175530 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 54569994 54570015 -65174883 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr13 54570730 54570770 -65174128 + AT_rich Low_complexity Low_complexity 1 40 0 2440 187 2 2 chr13 54571975 54572371 -65172527 + MER54B LTR ERVL 1 396 -397 3687 203 71 2 chr13 54572371 54573202 -65171696 + L1 LINE L1 3727 4614 -1532 465 262 28 14 chr13 54573202 54573347 -65171551 + MLT1A1 LTR MaLR 170 316 -49 7644 120 162 16 chr13 54573347 54575617 -65169281 + L1PBa LINE L1 12 2553 -4310 465 329 103 59 chr13 54575860 54576464 -65168434 - L2 LINE L2 -20 3293 2661 224 349 12 0 chr13 54577174 54577260 -65167638 - MIR3 SINE MIR -3 205 119 3074 120 17 4 chr13 54577766 54578241 -65166657 - MER41A LTR ERV1 0 554 74 32 26 0 0 chr13 54578895 54578934 -65165964 + AT_rich Low_complexity Low_complexity 1 39 0 2090 199 15 22 chr13 54579640 54580102 -65164796 + MER74C LTR ERVL 2 460 0 22 35 0 0 chr13 54581074 54581103 -65163795 + AT_rich Low_complexity Low_complexity 1 29 0 345 289 132 41 chr13 54581481 54581628 -65163270 + L1MC2 LINE L1 562 694 -5425 312 120 0 0 chr13 54581628 54581678 -65163220 + (CA)n Simple_repeat Simple_repeat 1 50 0 345 289 132 41 chr13 54581678 54582051 -65162847 + L1MC2 LINE L1 694 1110 -5009 3858 224 35 64 chr13 54582873 54583684 -65161214 + L1MC2 LINE L1 4087 4919 -1408 268 57 0 0 chr13 54583684 54583719 -65161179 + MER4E LTR ERV1 654 688 -78 3858 224 35 64 chr13 54583719 54583733 -65161165 + L1MC2 LINE L1 4919 4932 -1395 196 53 53 0 chr13 54583733 54583771 -65161127 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3858 224 35 64 chr13 54583771 54585035 -65159863 + L1MC2 LINE L1 4932 6127 -200 24 0 0 0 chr13 54585212 54585236 -65159662 + AT_rich Low_complexity Low_complexity 1 24 0 192 321 24 12 chr13 54586203 54586287 -65158611 + L2 LINE L2 3229 3313 0 24 0 0 0 chr13 54588740 54588764 -65156134 + AT_rich Low_complexity Low_complexity 1 24 0 4435 203 19 20 chr13 54589772 54591133 -65153765 - L1MB1 LINE L1 -9 6159 4795 643 242 16 26 chr13 54591128 54591322 -65153576 + L1MB1 LINE L1 4594 4785 -1361 * 598 290 25 25 chr13 54591846 54592046 -65152852 - MIR SINE MIR -33 229 30 1248 204 131 6 chr13 54592280 54592623 -65152275 - MLT1B LTR MaLR 0 390 5 2283 206 40 56 chr13 54593095 54593373 -65151525 - MER92B LTR ERV1 0 636 355 1963 80 0 90 chr13 54593373 54593714 -65151184 - AluY SINE Alu 0 313 1 2283 206 40 56 chr13 54593714 54594080 -65150818 - MER92B LTR ERV1 -281 355 1 21 0 0 0 chr13 54595668 54595689 -65149209 + AT_rich Low_complexity Low_complexity 1 21 0 2560 58 0 0 chr13 54595815 54596126 -65148772 - AluY SINE Alu 0 311 1 338 187 16 32 chr13 54596461 54596584 -65148314 + CT-rich Low_complexity Low_complexity 3 123 0 21 36 0 0 chr13 54597292 54597320 -65147578 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 54598178 54598205 -65146693 + AT_rich Low_complexity Low_complexity 1 27 0 453 66 0 0 chr13 54599357 54599418 -65145480 + (TG)n Simple_repeat Simple_repeat 2 62 0 840 188 7 0 chr13 54599480 54599629 -65145269 - L1PA16 LINE L1 -13 6153 6004 31 68 0 0 chr13 54599906 54599965 -65144933 + AT_rich Low_complexity Low_complexity 1 59 0 291 284 0 12 chr13 54600296 54600377 -65144521 + CT-rich Low_complexity Low_complexity 5 84 0 3692 192 52 35 chr13 54600403 54601370 -65143528 - L1MB3 LINE L1 -8 6175 5193 397 69 0 94 chr13 54601387 54601468 -65143430 - L1MC/D LINE L1 -749 5423 5364 * 4285 78 44 3 chr13 54601458 54602075 -65142823 + L1P LINE L1 4714 5355 -791 526 264 6 6 chr13 54602083 54602261 -65142637 - L1 LINE L1 -3381 2765 2588 26 50 0 0 chr13 54602605 54602645 -65142253 + AT_rich Low_complexity Low_complexity 1 40 0 44 70 0 0 chr13 54603001 54603087 -65141811 + AT_rich Low_complexity Low_complexity 1 86 0 1988 143 7 0 chr13 54604239 54604533 -65140365 + AluSx SINE Alu 1 296 -16 27 29 0 0 chr13 54604759 54604793 -65140105 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 54605250 54605281 -65139617 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 54605360 54605389 -65139509 + AT_rich Low_complexity Low_complexity 1 29 0 2337 77 3 13 chr13 54606490 54606801 -65138097 + AluY SINE Alu 4 311 0 1441 183 39 3 chr13 54606823 54607108 -65137790 + AluSx SINE Alu 1 295 -17 332 320 57 35 chr13 54611542 54611770 -65133128 - HAL1 LINE L1 -4 2503 2271 255 33 0 0 chr13 54611884 54611914 -65132984 - L1HS LINE L1 -52 6103 6074 341 65 0 0 chr13 54612103 54612169 -65132729 - AluSc SINE Alu 0 300 235 2044 83 0 0 chr13 54612169 54612433 -65132465 - AluSc SINE Alu -45 264 1 240 263 110 98 chr13 54612433 54612519 -65132379 - HAL1 LINE L1 -963 1544 1461 672 172 51 13 chr13 54612519 54612676 -65132222 - L1MA8 LINE L1 -2 6289 6127 240 263 110 98 chr13 54612676 54612916 -65131982 - HAL1 LINE L1 -1046 1461 1214 33 66 0 0 chr13 54612963 54613024 -65131874 + AT_rich Low_complexity Low_complexity 1 61 0 27 0 0 0 chr13 54614146 54614173 -65130725 + AT_rich Low_complexity Low_complexity 1 27 0 341 289 69 16 chr13 54614640 54614890 -65130008 - L1M4 LINE L1 -650 5524 5258 229 268 57 24 chr13 54615113 54615236 -65129662 + L1ME3A LINE L1 4768 4894 -1252 577 216 60 8 chr13 54616633 54616767 -65128131 - MLT1F1 LTR MaLR 0 567 427 227 335 124 31 chr13 54616916 54617110 -65127788 - L2 LINE L2 -172 3141 2930 2740 212 53 8 chr13 54617155 54617793 -65127105 + LTR65 LTR ERV1 1 667 -2 182 297 227 84 chr13 54618696 54619074 -65125824 + L2 LINE L2 1721 2044 -1270 288 0 0 0 chr13 54619074 54619106 -65125792 + (CA)n Simple_repeat Simple_repeat 2 33 0 182 297 227 84 chr13 54619106 54619440 -65125458 + L2 LINE L2 2044 2535 -779 2117 105 13 19 chr13 54620247 54620562 -65124336 - AluSp SINE Alu 0 313 1 306 315 122 13 chr13 54623056 54623294 -65121604 + L1ME3A LINE L1 5512 5775 -391 1461 195 26 19 chr13 54623350 54623658 -65121240 + AluJo SINE Alu 1 310 -2 453 19 0 0 chr13 54623713 54623767 -65121131 + (TG)n Simple_repeat Simple_repeat 1 54 0 693 242 84 60 chr13 54623771 54624078 -65120820 + L1ME3A LINE L1 5854 6166 0 25 31 0 0 chr13 54624234 54624266 -65120632 + AT_rich Low_complexity Low_complexity 1 32 0 1974 198 52 21 chr13 54624311 54624730 -65120168 - MSTB1 LTR MaLR 0 432 1 22 0 0 0 chr13 54625028 54625050 -65119848 + AT_rich Low_complexity Low_complexity 1 22 0 1427 210 14 20 chr13 54625196 54625491 -65119407 + AluJo SINE Alu 1 293 -19 205 204 23 0 chr13 54625973 54626017 -65118881 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 182 329 0 13 chr13 54626040 54626119 -65118779 + MIR SINE MIR 183 260 -2 1535 199 39 62 chr13 54626356 54626792 -65118106 - MSTC LTR MaLR 0 428 3 21 57 0 0 chr13 54627106 54627141 -65117757 + AT_rich Low_complexity Low_complexity 1 35 0 22 103 0 0 chr13 54628339 54628417 -65116481 + AT_rich Low_complexity Low_complexity 1 78 0 224 345 134 12 chr13 54628640 54628811 -65116087 + MIR SINE MIR 58 249 -13 381 207 0 0 chr13 54628971 54629058 -65115840 + (TA)n Simple_repeat Simple_repeat 1 87 0 1381 157 19 4 chr13 54629060 54629321 -65115577 - HSMAR2 DNA Mariner 0 1302 1038 7389 27 2 0 chr13 54629321 54630196 -65114702 + L1PA4 LINE L1 5278 6154 -1 1146 201 43 109 chr13 54630215 54630583 -65114315 + MLT1A2 LTR MaLR 30 373 -1 369 109 0 0 chr13 54630587 54630651 -65114247 + (CA)n Simple_repeat Simple_repeat 1 64 0 5496 168 50 4 chr13 54630661 54631672 -65113226 + HSMAR2 DNA Mariner 11 1067 -235 7306 30 1 1 chr13 54631672 54632540 -65112358 - L1PA4 LINE L1 -9 6146 5279 1394 157 19 4 chr13 54632540 54632802 -65112096 + HSMAR2 DNA Mariner 1037 1302 0 381 207 0 0 chr13 54632804 54632891 -65112007 + (TA)n Simple_repeat Simple_repeat 1 87 0 224 345 134 12 chr13 54633051 54633222 -65111676 - MIR SINE MIR -13 249 58 2494 108 5 8 chr13 54634462 54634840 -65110058 + L1PA10 LINE L1 5789 6165 -3 22 0 0 0 chr13 54634840 54634862 -65110036 + AT_rich Low_complexity Low_complexity 1 22 0 1343 289 65 14 chr13 54635119 54635777 -65109121 + L1ME3A LINE L1 5296 5987 -183 403 278 116 37 chr13 54635988 54636449 -65108449 + L1MEc LINE L1 2037 2505 -3710 356 297 138 0 chr13 54638078 54638216 -65106682 - LTR67 LTR ERVL -8 549 393 289 260 107 40 chr13 54638712 54638862 -65106036 - MLT1J LTR MaLR -330 181 22 499 281 20 51 chr13 54638886 54639082 -65105816 - LTR67 LTR ERVL -366 191 2 2104 107 10 26 chr13 54639108 54639416 -65105482 - AluSc SINE Alu -6 303 1 1379 357 80 30 chr13 54639417 54640383 -65104515 - L2 LINE L2 -280 3033 2018 734 246 77 16 chr13 54640839 54641087 -65103811 - MLT1F1 LTR MaLR 0 567 305 260 79 26 0 chr13 54641129 54641167 -65103731 - MSTA LTR MaLR 0 428 390 24 77 0 0 chr13 54641889 54641941 -65102957 + AT_rich Low_complexity Low_complexity 1 52 0 182 216 54 0 chr13 54642236 54642273 -65102625 - L2 LINE L2 -8 3305 3267 21 36 0 0 chr13 54642317 54642345 -65102553 + AT_rich Low_complexity Low_complexity 1 28 0 402 311 154 30 chr13 54642425 54642840 -65102058 - L2 LINE L2 -234 3079 2609 2568 89 27 0 chr13 54644239 54644609 -65100289 - L1P4 LINE L1 -500 5668 5289 430 141 54 11 chr13 54644590 54644682 -65100216 - L1P4 LINE L1 -1790 4356 4261 * 596 106 0 0 chr13 54644687 54644781 -65100117 + L1PA2 LINE L1 6061 6154 -1 25 0 0 0 chr13 54645078 54645103 -65099795 + AT_rich Low_complexity Low_complexity 1 25 0 2332 18 0 0 chr13 54645346 54645619 -65099279 + L1P LINE L1 4333 4605 -1541 567 237 60 120 chr13 54645619 54645837 -65099061 + L1MEc LINE L1 3059 3289 -2926 7774 16 0 3 chr13 54645837 54646923 -65097975 - L1PA2 LINE L1 0 6155 5071 567 237 60 120 chr13 54646923 54647236 -65097662 + L1MEc LINE L1 3289 3558 -2657 237 345 137 7 chr13 54647366 54647505 -65097393 - L2 LINE L2 -202 3070 2914 188 163 0 41 chr13 54648189 54648238 -65096660 + CT-rich Low_complexity Low_complexity 2 48 0 195 129 0 0 chr13 54648351 54648382 -65096516 + (TA)n Simple_repeat Simple_repeat 2 32 0 2380 70 0 0 chr13 54649313 54649613 -65095285 + AluY SINE Alu 1 300 -11 348 319 112 59 chr13 54649876 54650104 -65094794 + L3 LINE CR1 898 1153 -424 2483 102 19 11 chr13 54650104 54650476 -65094422 - THE1C LTR MaLR 0 375 1 348 319 112 59 chr13 54650476 54650604 -65094294 + L3 LINE CR1 1153 1273 -304 897 200 17 100 chr13 54650702 54650992 -65093906 - L1ME2 LINE L1 -10 6154 5889 702 288 50 75 chr13 54651141 54651554 -65093344 - MLT1G3 LTR MaLR -106 436 18 1701 239 58 6 chr13 54651573 54652195 -65092703 - L1ME2 LINE L1 -399 5765 5113 6080 219 31 50 chr13 54652462 54655238 -65089660 + L1MA4 LINE L1 3161 5986 -314 2107 74 0 0 chr13 54655238 54655496 -65089402 + AluY SINE Alu 44 301 -10 6080 219 31 50 chr13 54655496 54655669 -65089229 + L1MA4 LINE L1 5986 5945 -355 2836 112 21 0 chr13 54655669 54656088 -65088810 + L1PA10 LINE L1 5729 6156 -12 6080 219 31 50 chr13 54656088 54656435 -65088463 + L1MA4 LINE L1 5944 6296 -4 1546 194 7 4 chr13 54656513 54656814 -65088084 - AluJo SINE Alu 0 314 13 413 290 22 0 chr13 54656858 54656996 -65087902 + L1MC4a LINE L1 6728 6868 -940 192 40 0 0 chr13 54657181 54657206 -65087692 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 347 330 9 0 chr13 54657272 54657384 -65087514 + L1MC4a LINE L1 7320 7432 -376 2014 119 6 19 chr13 54657790 54658102 -65086796 + AluSg SINE Alu 1 308 -2 218 344 138 41 chr13 54658479 54658732 -65086166 - L2 LINE L2 -735 2579 2352 1838 182 93 13 chr13 54658732 54659128 -65085770 + MSTA LTR MaLR 1 428 0 7945 183 41 22 chr13 54659128 54660445 -65084453 + MSTA-int LTR MaLR 1 1357 -294 2557 44 0 0 chr13 54660445 54660739 -65084159 + AluY SINE Alu 6 299 -12 7945 183 41 22 chr13 54660739 54661040 -65083858 + MSTA-int LTR MaLR 1357 1651 0 1832 187 81 30 chr13 54661040 54661447 -65083451 + MSTA LTR MaLR 1 428 0 218 344 138 41 chr13 54661447 54661531 -65083367 - L2 LINE L2 -961 2353 2207 405 304 70 6 chr13 54661560 54661718 -65083180 + MIR SINE MIR 12 179 -83 11508 228 47 43 chr13 54661797 54663833 -65081065 - L1MA7 LINE L1 0 6527 4501 321 26 0 0 chr13 54663833 54663871 -65081027 + (TA)n Simple_repeat Simple_repeat 1 38 0 11508 228 47 43 chr13 54663871 54667865 -65077033 - L1MA7 LINE L1 -2026 4501 821 313 289 10 29 chr13 54667949 54668053 -65076845 - L1MA7 LINE L1 -5839 464 363 24 32 0 0 chr13 54668357 54668388 -65076510 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 54669148 54669171 -65075727 + AT_rich Low_complexity Low_complexity 1 23 0 191 156 44 0 chr13 54670160 54670205 -65074693 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 2207 235 48 27 chr13 54673010 54673631 -65071267 - MER92B LTR ERV1 0 636 3 2245 175 52 28 chr13 54673731 54674234 -65070664 - L1 LINE L1 -1304 4842 4328 2902 182 53 3 chr13 54674235 54674878 -65070020 + L1MA8 LINE L1 5612 6286 -5 937 281 89 49 chr13 54675945 54676439 -65068459 + L1MEc LINE L1 23 536 -5860 198 0 0 0 chr13 54676532 54676554 -65068344 + (CAA)n Simple_repeat Simple_repeat 2 23 0 875 161 103 0 chr13 54676838 54676993 -65067905 - Tigger5 DNA MER2_type 0 2323 2153 583 196 27 0 chr13 54676986 54677098 -65067800 - Tigger5 DNA MER2_type -2206 117 3 * 2158 161 24 43 chr13 54677213 54677635 -65067263 - L1MB1 LINE L1 -354 5814 5401 2123 126 21 21 chr13 54677635 54678015 -65066883 + L1MB1 LINE L1 5787 6167 -1 290 362 64 21 chr13 54678300 54678441 -65066457 - L2 LINE L2 -926 2388 2242 1459 105 5 14 chr13 54678558 54678768 -65066130 + AluSg/x SINE Alu 94 301 -9 474 74 123 0 chr13 54678768 54678849 -65066049 - MLT2A2 LTR ERVL -362 91 1 752 270 48 0 chr13 54678860 54679049 -65065849 + MLT1E2 LTR MaLR 429 626 0 27 0 0 0 chr13 54679206 54679233 -65065665 + AT_rich Low_complexity Low_complexity 1 27 0 663 132 16 8 chr13 54679610 54679739 -65065159 + CT-rich Low_complexity Low_complexity 4 133 0 192 77 0 0 chr13 54679751 54679777 -65065121 + (TC)n Simple_repeat Simple_repeat 1 26 0 919 232 13 90 chr13 54680323 54680633 -65064265 - MLT2B1 LTR ERVL 0 534 283 274 271 17 0 chr13 54680640 54680699 -65064199 + AluSp SINE Alu 136 195 -108 495 320 76 32 chr13 54680909 54681159 -65063739 - MIR SINE MIR -1 261 1 2370 236 24 58 chr13 54681608 54682234 -65062664 - MER77 LTR ERV1 0 605 1 235 227 0 0 chr13 54682823 54682867 -65062031 + (CA)n Simple_repeat Simple_repeat 2 45 0 668 320 84 18 chr13 54683227 54683665 -65061233 + HAL1b LINE L1 94 560 -788 315 0 0 0 chr13 54684153 54684188 -65060710 + (TG)n Simple_repeat Simple_repeat 2 36 0 1394 129 18 0 chr13 54684318 54684535 -65060363 - Tigger5 DNA MER2_type -7 2316 2096 427 213 0 0 chr13 54684540 54684615 -65060283 - Tigger5 DNA MER2_type -2242 81 7 270 379 89 6 chr13 54684843 54685012 -65059886 - MIR SINE MIR -74 188 6 312 197 30 0 chr13 54685160 54685226 -65059672 + L1MC4 LINE L1 6636 6703 -1339 28 0 0 0 chr13 54687155 54687183 -65057715 + AT_rich Low_complexity Low_complexity 1 28 0 264 30 0 0 chr13 54687373 54687406 -65057492 + (CA)n Simple_repeat Simple_repeat 2 34 0 456 301 90 74 chr13 54687406 54688096 -65056802 + L1MC4a LINE L1 4665 5372 -774 2201 116 0 0 chr13 54688096 54688406 -65056492 + AluSg SINE Alu 1 310 0 456 301 90 74 chr13 54688406 54688438 -65056460 + L1MC4a LINE L1 5372 5402 -744 592 318 100 24 chr13 54688447 54688915 -65055983 + L1MC4a LINE L1 5430 5933 -1875 334 360 108 20 chr13 54689337 54689540 -65055358 - L2 LINE L2 -478 2836 2616 776 240 20 10 chr13 54689549 54689745 -65055153 - MER92B LTR ERV1 -10 626 429 1255 222 29 98 chr13 54689861 54690351 -65054547 - MER92B LTR ERV1 -180 456 1 842 303 109 75 chr13 54690379 54691547 -65053351 - L2 LINE L2 0 3313 2132 202 328 90 0 chr13 54691948 54692070 -65052828 - MIR SINE MIR -10 252 120 333 281 0 11 chr13 54692269 54692358 -65052540 - MIR SINE MIR -11 251 164 2295 190 5 14 chr13 54692482 54692909 -65051989 - MSTB LTR MaLR 0 426 4 8689 188 13 7 chr13 54692912 54694553 -65050345 - MSTB-int LTR MaLR 0 1651 1 2344 179 9 19 chr13 54694553 54694983 -65049915 - MSTB LTR MaLR 0 426 1 292 246 0 0 chr13 54694992 54695049 -65049849 - MIR SINE MIR -123 139 83 25 0 0 0 chr13 54696324 54696349 -65048549 + AT_rich Low_complexity Low_complexity 1 25 0 213 108 0 0 chr13 54696551 54696588 -65048310 + (TG)n Simple_repeat Simple_repeat 1 37 0 323 394 41 35 chr13 54696988 54697328 -65047570 - MLT1K LTR MaLR -112 476 135 192 329 40 26 chr13 54698172 54698248 -65046650 + MIR SINE MIR 37 113 -95 23 68 0 0 chr13 54699184 54699228 -65045670 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 54700536 54700557 -65044341 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 54700764 54700795 -65044103 + AT_rich Low_complexity Low_complexity 1 31 0 182 128 26 0 chr13 54702774 54702813 -65042085 + (TA)n Simple_repeat Simple_repeat 2 41 0 5010 25 0 0 chr13 54702857 54703759 -65041139 + L1P2 LINE L1 4804 5705 -450 1291 203 43 21 chr13 54704043 54704324 -65040574 + AluJo SINE Alu 1 287 -25 2892 189 23 12 chr13 54705450 54706097 -65038801 - L1MA3 LINE L1 0 6305 5652 797 130 14 22 chr13 54706114 54706336 -65038562 + CT-rich Low_complexity Low_complexity 1 220 0 1565 181 18 36 chr13 54706342 54706678 -65038220 - L1MA3 LINE L1 -641 5664 5335 1540 176 40 5 chr13 54706674 54707208 -65037690 + L1M1 LINE L1 3325 3876 -3689 * 22 0 0 0 chr13 54708840 54708862 -65036036 + AT_rich Low_complexity Low_complexity 1 22 0 226 238 0 0 chr13 54708972 54709014 -65035884 + (TG)n Simple_repeat Simple_repeat 2 43 0 356 131 0 0 chr13 54709300 54709361 -65035537 - L1MA1 LINE L1 0 6302 6242 548 239 69 0 chr13 54710128 54710258 -65034640 - MLT1A2 LTR MaLR -235 139 1 25 31 0 0 chr13 54710738 54710770 -65034128 + AT_rich Low_complexity Low_complexity 1 32 0 2344 167 68 9 chr13 54712458 54712896 -65032002 + LTR24 LTR ERV1 4 467 0 23 0 0 0 chr13 54714672 54714695 -65030203 + AT_rich Low_complexity Low_complexity 1 23 0 459 216 34 0 chr13 54715977 54716065 -65028833 - Tigger7 DNA MER2_type -6 2481 2391 836 285 47 27 chr13 54716066 54716180 -65028718 - Tigger7 DNA MER2_type -287 263 153 1750 129 97 26 chr13 54716180 54716530 -65028368 + THE1C LTR MaLR 1 375 0 836 285 47 27 chr13 54716530 54716671 -65028227 - Tigger7 DNA MER2_type -397 153 3 634 308 45 30 chr13 54716912 54717308 -65027590 - LTR16B LTR ERVL 0 464 63 450 200 61 0 chr13 54718432 54718547 -65026351 + LTR37A LTR ERV1 92 213 -213 278 196 54 11 chr13 54718728 54718820 -65026078 + LTR37A LTR ERV1 320 415 -11 234 371 34 51 chr13 54718929 54719107 -65025791 - L2 LINE L2 -1 3271 3097 1945 204 53 47 chr13 54719242 54719798 -65025100 + MER34B LTR ERV1 10 541 -24 231 349 64 0 chr13 54719922 54720044 -65024854 - MIR SINE MIR -63 145 25 647 229 82 33 chr13 54720168 54720196 -65024702 - MLT1B LTR MaLR -7 383 358 3217 200 10 8 chr13 54720196 54720817 -65024081 - LTR26E LTR ERV1 0 622 1 647 229 82 33 chr13 54720817 54720971 -65023927 - MLT1B LTR MaLR -32 358 192 715 237 58 0 chr13 54721166 54721305 -65023593 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr13 54721309 54721331 -65023567 + (TAA)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr13 54722113 54722136 -65022762 + AT_rich Low_complexity Low_complexity 1 23 0 209 211 0 19 chr13 54723347 54723399 -65021499 + GA-rich Low_complexity Low_complexity 2 52 0 801 138 5 122 chr13 54723504 54723692 -65021206 + MER21B LTR ERV1 330 495 -368 229 278 62 42 chr13 54724381 54724525 -65020373 + HAL1b LINE L1 161 307 -1041 640 169 0 8 chr13 54725418 54725536 -65019362 + MLT2C1 LTR ERVL 21 137 -260 1391 316 151 9 chr13 54726450 54727253 -65017645 - L2 LINE L2 -1151 2163 1247 416 301 93 31 chr13 54727301 54727560 -65017338 - L2 LINE L2 -2366 948 674 2150 100 3 7 chr13 54728532 54728833 -65016065 + AluSp SINE Alu 1 300 -13 238 336 159 44 chr13 54729182 54729408 -65015490 + L2 LINE L2 2986 3237 -35 12336 226 55 25 chr13 54729601 54729954 -65014944 - L1MA4 LINE L1 -2 7717 7376 2426 50 3 0 chr13 54729954 54730255 -65014643 - AluY SINE Alu -9 302 1 12336 226 55 25 chr13 54730255 54734037 -65010861 - L1MA4 LINE L1 -343 7376 3707 351 0 0 0 chr13 54734037 54734076 -65010822 + (TG)n Simple_repeat Simple_repeat 2 40 0 12336 226 55 25 chr13 54734076 54736756 -65008142 - L1MA4 LINE L1 -4012 3707 15 200 363 62 26 chr13 54737205 54737318 -65007580 + L2 LINE L2 3149 3265 -7 23 33 0 0 chr13 54737365 54737395 -65007503 + AT_rich Low_complexity Low_complexity 1 30 0 1505 116 9 5 chr13 54738203 54738419 -65006479 - AluSq SINE Alu -96 217 1 2200 120 37 3 chr13 54738419 54738769 -65006129 - L1MA5A LINE L1 -328 5969 5608 1731 159 22 0 chr13 54738769 54739084 -65005814 + L1MA5A LINE L1 5299 5620 -677 727 71 0 20 chr13 54739086 54739185 -65005713 + AluSg SINE Alu 34 130 -180 37451 78 6 12 chr13 54739207 54744338 -65000560 + L1P LINE L1 11 5107 -1039 26 50 0 0 chr13 54744438 54744478 -65000420 + AT_rich Low_complexity Low_complexity 1 40 0 216 0 0 0 chr13 54746010 54746034 -64998864 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 258 105 0 0 chr13 54746434 54746472 -64998426 + (CA)n Simple_repeat Simple_repeat 2 39 0 27 0 0 0 chr13 54746662 54746689 -64998209 + AT_rich Low_complexity Low_complexity 1 27 0 927 328 114 12 chr13 54746905 54747404 -64997494 + MLT1H1 LTR MaLR 33 545 -10 538 311 143 66 chr13 54747415 54748018 -64996880 + L2 LINE L2 1536 2242 -1072 210 91 0 0 chr13 54748018 54748051 -64996847 + (TG)n Simple_repeat Simple_repeat 2 34 0 538 311 143 66 chr13 54748051 54748408 -64996490 + L2 LINE L2 2242 2570 -744 882 263 62 41 chr13 54748585 54749122 -64995776 - L1MDa LINE L1 -1709 4831 4284 1449 257 104 25 chr13 54749165 54749403 -64995495 - L1MDa LINE L1 -3152 3388 3170 760 187 0 0 chr13 54749403 54749542 -64995356 - L1PA16 LINE L1 0 6166 6028 1449 257 104 25 chr13 54749542 54750346 -64994552 - L1MDa LINE L1 -3370 3170 2267 633 252 76 26 chr13 54750526 54750828 -64994070 - L1MDa LINE L1 -4484 2056 1740 219 250 0 0 chr13 54750881 54750941 -64993957 + T-rich Low_complexity Low_complexity 1 60 0 1977 140 48 28 chr13 54751211 54751568 -64993330 - THE1B LTR MaLR 0 364 1 203 0 37 0 chr13 54751606 54751633 -64993265 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 704 356 53 13 chr13 54751852 54752275 -64992623 - L2 LINE L2 -8 3264 2390 287 300 0 0 chr13 54752302 54752392 -64992506 - L1M4 LINE L1 -3673 2473 2384 243 239 14 14 chr13 54752496 54752567 -64992331 - L1M4 LINE L1 -3748 2398 2328 1845 150 4 0 chr13 54752602 54752876 -64992022 - AluSx SINE Alu -30 282 8 988 201 36 22 chr13 54752889 54753113 -64991785 - AluJo SINE Alu -4 308 82 237 235 0 0 chr13 54753114 54753182 -64991716 - L1M4 LINE L1 -3828 2318 2251 761 251 185 46 chr13 54753226 54753724 -64991174 - L2 LINE L2 -1551 1763 1197 7131 297 42 16 chr13 54755247 54758237 -64986661 - ERVL-C1 LTR ERVL -2604 3160 1 333 305 22 35 chr13 54758237 54758376 -64986522 - MLT2C1 LTR ERVL 0 663 269 816 224 26 39 chr13 54758450 54758682 -64986216 - MLT2C1 LTR ERVL -168 229 1 1345 151 0 5 chr13 54759360 54759579 -64985319 + AluSc SINE Alu 82 299 -10 441 169 0 0 chr13 54760792 54760875 -64984023 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 23 33 0 0 chr13 54761005 54761035 -64983863 + AT_rich Low_complexity Low_complexity 1 30 0 36 62 0 0 chr13 54761118 54761182 -64983716 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr13 54761271 54761294 -64983604 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr13 54762897 54762933 -64981965 + AT_rich Low_complexity Low_complexity 1 36 0 1737 211 87 11 chr13 54762993 54763373 -64981525 + L1P3 LINE L1 36 444 -5431 1404 216 22 8 chr13 54763394 54763764 -64981134 + L1MA5 LINE L1 4844 5218 -928 2087 93 7 20 chr13 54763843 54764143 -64980755 + AluSg SINE Alu 1 296 -14 3083 139 23 22 chr13 54764176 54764803 -64980095 + L1MA5 LINE L1 5226 5854 -449 9375 169 38 15 chr13 54764905 54767508 -64977390 - L1MA3 LINE L1 -380 5925 3260 914 126 21 7 chr13 54767511 54767654 -64977244 - AluSg/x SINE Alu -8 302 158 806 80 0 0 chr13 54767754 54767854 -64977044 - AluSq/x SINE Alu -206 106 7 8923 126 28 33 chr13 54767856 54769264 -64975634 - L1M1 LINE L1 -3924 3641 2252 1496 209 7 3 chr13 54769264 54769560 -64975338 + AluJb SINE Alu 1 297 -15 8923 126 28 33 chr13 54769560 54769796 -64975102 - L1M1 LINE L1 -5313 2252 2016 680 144 8 76 chr13 54769790 54769922 -64974976 + L1M1 LINE L1 481 603 -6962 * 478 134 49 0 chr13 54769928 54770010 -64974888 - L1M1 LINE L1 -5551 2014 1929 1983 124 0 3 chr13 54770518 54770823 -64974075 + AluSx SINE Alu 1 304 0 1160 221 38 49 chr13 54771308 54771675 -64973223 - MLT1A1 LTR MaLR -2 363 1 27 0 0 0 chr13 54772327 54772354 -64972544 + AT_rich Low_complexity Low_complexity 1 27 0 1027 130 38 55 chr13 54772520 54772758 -64972140 + L1MA5 LINE L1 6067 6300 0 321 266 13 0 chr13 54772914 54772993 -64971905 - MLT1J2 LTR MaLR -307 143 64 471 289 39 61 chr13 54775048 54775228 -64969670 - LTR16C LTR ERVL -16 475 300 28 29 0 0 chr13 54775658 54775693 -64969205 + AT_rich Low_complexity Low_complexity 1 35 0 414 233 86 127 chr13 54776641 54776902 -64967996 + Charlie1 DNA MER1_type 2180 2478 -283 487 77 0 0 chr13 54776902 54776967 -64967931 - MADE1 DNA Mariner -15 65 1 414 233 86 127 chr13 54776967 54777152 -64967746 + Charlie1 DNA MER1_type 2478 2669 -92 1322 310 91 9 chr13 54777152 54777688 -64967210 - L1MDa LINE L1 -5807 733 154 22 56 0 0 chr13 54777830 54777866 -64967032 + AT_rich Low_complexity Low_complexity 1 36 0 1312 241 30 6 chr13 54778921 54779253 -64965645 - MER58B DNA MER1_type -1 340 1 186 43 0 0 chr13 54779545 54779568 -64965330 + (CAA)n Simple_repeat Simple_repeat 2 24 0 351 332 59 40 chr13 54779968 54780342 -64964556 - L1ME4a LINE L1 -205 5916 5536 3130 70 2 41 chr13 54780448 54780888 -64964010 + LTR17 LTR ERV1 358 780 0 3054 221 42 11 chr13 54780888 54781537 -64963361 + L1MA9 LINE L1 5489 6167 -145 198 118 0 0 chr13 54781537 54781571 -64963327 + (CA)n Simple_repeat Simple_repeat 1 34 0 3054 221 42 11 chr13 54781571 54781683 -64963215 + L1MA9 LINE L1 6167 6274 -38 1130 234 60 18 chr13 54781831 54782113 -64962785 - AluJo SINE Alu -8 294 1 186 206 111 16 chr13 54782217 54782280 -64962618 - MIR SINE MIR -110 152 84 2731 16 0 3 chr13 54782612 54782976 -64961922 + AluY SINE Alu 1 363 0 188 347 116 0 chr13 54783341 54783436 -64961462 + L2 LINE L2 2957 3062 -251 695 276 14 14 chr13 54784040 54784261 -64960637 - L1MEc LINE L1 -4555 1841 1621 1488 241 25 44 chr13 54784276 54784683 -64960215 + MSTB1 LTR MaLR 1 399 -33 1445 146 11 58 chr13 54784683 54784958 -64959940 - AluSx SINE Alu -12 300 39 286 27 27 0 chr13 54784959 54784996 -64959902 + MSTB1 LTR MaLR 395 432 0 30 0 0 0 chr13 54785019 54785049 -64959849 + AT_rich Low_complexity Low_complexity 1 30 0 2348 67 0 29 chr13 54785098 54785413 -64959485 - AluY SINE Alu -3 308 3 248 375 27 9 chr13 54785689 54785801 -64959097 - MER81 DNA DNA 0 114 1 2998 282 51 19 chr13 54785803 54787007 -64957891 - L1MEc LINE L1 -5125 1271 30 2185 120 3 0 chr13 54787071 54787370 -64957528 + AluSp SINE Alu 1 300 -13 413 297 39 28 chr13 54787900 54788082 -64956816 + MLT1J LTR MaLR 28 211 -300 357 364 42 21 chr13 54788372 54788608 -64956290 - L2 LINE L2 -673 2641 2401 263 59 0 0 chr13 54789732 54789766 -64955132 + HERVL LTR ERVL 238 271 -5383 183 42 0 0 chr13 54790471 54790495 -64954403 + (TA)n Simple_repeat Simple_repeat 2 25 0 2026 130 10 0 chr13 54790547 54790855 -64954043 + AluSx SINE Alu 1 311 -1 2287 274 80 10 chr13 54791202 54792224 -64952674 - L1MD1 LINE L1 -157 6085 4871 396 0 0 0 chr13 54792679 54792723 -64952175 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 30 0 0 chr13 54792890 54792923 -64951975 + AT_rich Low_complexity Low_complexity 1 33 0 6104 250 15 9 chr13 54793195 54795245 -64949653 - L1PA13 LINE L1 -2877 3920 1835 1906 132 0 0 chr13 54795245 54795511 -64949387 - AluSc SINE Alu -8 301 36 6104 250 15 9 chr13 54795511 54796060 -64948838 - L1PA13 LINE L1 -4962 1835 1291 181 304 0 0 chr13 54796276 54796322 -64948576 + MIR SINE MIR 206 251 -11 24 0 0 0 chr13 54797585 54797609 -64947289 + AT_rich Low_complexity Low_complexity 1 24 0 2109 187 15 15 chr13 54797764 54798165 -64946733 + MSTA LTR MaLR 28 428 0 452 217 28 0 chr13 54798349 54798455 -64946443 - MER3 DNA MER1_type -68 141 33 1380 325 30 23 chr13 54798557 54799252 -64945646 - ERVL LTR ERVL -2501 3263 2564 8328 194 32 14 chr13 54799252 54801924 -64942974 - L1PA15 LINE L1 -77 6088 3380 607 117 0 19 chr13 54802024 54802127 -64942771 - MER2 DNA MER2_type -154 191 91 * 728 258 21 0 chr13 54802117 54802303 -64942595 + MLT1B LTR MaLR 201 390 0 27 29 0 0 chr13 54803951 54803985 -64940913 + AT_rich Low_complexity Low_complexity 1 34 0 25820 36 1 4 chr13 54804370 54807571 -64937327 - L1P LINE L1 -1267 4879 1690 21 0 0 0 chr13 54808222 54808243 -64936655 + AT_rich Low_complexity Low_complexity 1 21 0 416 226 170 0 chr13 54808969 54809075 -64935823 + MER6 DNA MER2_type 1 124 -741 330 187 0 53 chr13 54809062 54809137 -64935761 + MER52A LTR ERV1 1511 1581 -174 * 311 277 25 38 chr13 54809295 54809442 -64935456 - L1MC4 LINE L1 -1070 6942 6778 652 195 0 0 chr13 54809473 54809591 -64935307 + FLAM_C SINE Alu 1 118 -15 180 0 0 0 chr13 54809596 54809616 -64935282 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2514 111 22 3 chr13 54810209 54810577 -64934321 + THE1C LTR MaLR 1 375 0 9189 133 39 42 chr13 54810577 54812162 -64932736 + THE1C-int LTR MaLR 1 1580 0 2374 120 27 3 chr13 54812162 54812528 -64932370 + THE1C LTR MaLR 1 375 0 733 168 0 30 chr13 54812723 54812854 -64932044 - MSTA LTR MaLR -301 127 1 8633 186 22 17 chr13 54812854 54814496 -64930402 - MSTA-int LTR MaLR 0 1651 1 2346 149 52 2 chr13 54814496 54814904 -64929994 - MSTA LTR MaLR 0 428 1 512 263 26 0 chr13 54815262 54815376 -64929522 - MER45A DNA AcHobo -1 177 61 209 398 37 37 chr13 54816992 54817261 -64927637 - L2 LINE L2 -2626 688 420 2364 138 48 12 chr13 54817346 54817758 -64927140 - MSTA LTR MaLR 0 428 2 306 306 0 0 chr13 54817883 54817955 -64926943 + L2 LINE L2 3241 3312 -1 396 363 21 31 chr13 54818884 54819077 -64925821 - MIR3 SINE MIR 0 208 18 4912 46 9 0 chr13 54819161 54819790 -64925108 - L1P LINE L1 -2983 3163 2529 * 8366 56 0 2 chr13 54819788 54820854 -64924044 + L1P LINE L1 3176 4239 -1907 414 39 0 0 chr13 54822051 54822103 -64922795 + (TA)n Simple_repeat Simple_repeat 1 52 0 189 0 0 0 chr13 54822102 54822123 -64922775 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 38 51 0 0 chr13 54822324 54822383 -64922515 + AT_rich Low_complexity Low_complexity 1 59 0 389 247 8 142 chr13 54822451 54822690 -64922208 - MIR SINE MIR -50 212 6 36 82 0 0 chr13 54823741 54823826 -64921072 + AT_rich Low_complexity Low_complexity 1 85 0 24 0 0 0 chr13 54823917 54823941 -64920957 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 54824020 54824042 -64920856 + AT_rich Low_complexity Low_complexity 1 22 0 180 333 181 28 chr13 54824587 54824731 -64920167 - MIR3 SINE MIR -4 204 39 516 101 11 22 chr13 54825505 54825594 -64919304 - L1PA16 LINE L1 -3 6163 6076 21 0 0 0 chr13 54825906 54825927 -64918971 + AT_rich Low_complexity Low_complexity 1 21 0 219 139 0 47 chr13 54826112 54826155 -64918743 - L2 LINE L2 0 3313 3273 6951 208 61 13 chr13 54826637 54828358 -64916540 - L1P LINE L1 -1638 4508 2705 216 308 55 55 chr13 54828380 54828471 -64916427 + L2 LINE L2 3215 3305 -8 1818 150 40 35 chr13 54829684 54830057 -64914841 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 54830316 54830351 -64914547 + AT_rich Low_complexity Low_complexity 1 35 0 276 146 97 165 chr13 54831185 54831288 -64913610 + MER58 DNA MER1_type 4 99 -2321 422 233 10 10 chr13 54831299 54831402 -64913496 + MER58 DNA MER1_type 2318 2420 0 23 0 0 0 chr13 54831875 54831898 -64913000 + AT_rich Low_complexity Low_complexity 1 23 0 614 302 47 0 chr13 54831910 54832200 -64912698 + L1M4c LINE L1 2372 2682 -3700 * 1626 293 26 23 chr13 54832183 54832445 -64912453 + L1M4c LINE L1 2582 2842 -3540 2206 93 0 0 chr13 54832445 54832735 -64912163 + AluSx SINE Alu 1 290 -22 1626 293 26 23 chr13 54832735 54833172 -64911726 + L1M4c LINE L1 2842 3283 -3099 1664 153 23 39 chr13 54833193 54833501 -64911397 + AluSx SINE Alu 1 303 -9 2036 232 20 52 chr13 54833507 54834159 -64910739 + L1M4c LINE L1 3441 4071 -2311 495 246 99 0 chr13 54834323 54834368 -64910530 - L1MA10 LINE L1 -3 6331 6252 294 29 0 0 chr13 54834368 54834403 -64910495 + (TA)n Simple_repeat Simple_repeat 2 36 0 1759 269 50 35 chr13 54834403 54835858 -64909040 - L1ME1 LINE L1 -50 6116 4608 864 213 11 11 chr13 54836251 54836439 -64908459 + Tigger6 DNA MER2_type 6 193 -1404 13725 98 31 3 chr13 54836544 54838458 -64906440 - HERVL LTR ERVL -1824 3830 1863 328 323 53 58 chr13 54838549 54838775 -64906123 - MIR SINE MIR -36 226 2 7622 153 29 8 chr13 54840712 54842008 -64902890 - Tigger1 DNA MER2_type -1074 1344 23 21 0 0 0 chr13 54843573 54843594 -64901304 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr13 55043916 55043944 -64700954 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2219 69 7 0 chr13 55043946 55044222 -64700676 - AluY SINE Alu -33 278 1 446 210 97 85 chr13 55044484 55044595 -64700303 + MLT2F LTR ERVL 486 601 -62 189 74 0 0 chr13 55044595 55044622 -64700276 + (CATA)n Simple_repeat Simple_repeat 4 30 0 446 210 97 85 chr13 55044622 55044686 -64700212 + MLT2F LTR ERVL 601 663 0 856 222 13 13 chr13 55045269 55045499 -64699399 + L1M4 LINE L1 4308 4537 -1609 1234 194 66 36 chr13 55046097 55046416 -64698482 - MLT1A1 LTR MaLR -21 369 1 21 57 0 0 chr13 55047716 55047751 -64697147 + AT_rich Low_complexity Low_complexity 1 35 0 486 295 65 37 chr13 55047935 55048265 -64696633 + L1MC4 LINE L1 6630 6961 -1000 339 280 73 38 chr13 55048496 55048757 -64696141 + L1MC4a LINE L1 7144 7413 -395 2228 105 0 0 chr13 55048798 55049092 -64695806 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr13 55049176 55049200 -64695698 + AT_rich Low_complexity Low_complexity 1 24 0 240 214 0 18 chr13 55049353 55049409 -64695489 + GA-rich Low_complexity Low_complexity 4 58 0 1738 132 55 66 chr13 55049763 55050142 -64694756 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr13 55051824 55051852 -64693046 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 55052208 55052236 -64692662 + AT_rich Low_complexity Low_complexity 1 28 0 205 303 73 46 chr13 55052767 55052876 -64692022 + MIR3 SINE MIR 72 183 -25 24 0 0 0 chr13 55053694 55053718 -64691180 + AT_rich Low_complexity Low_complexity 1 24 0 769 157 29 0 chr13 55053827 55053967 -64690931 - L1MA9 LINE L1 -1 6311 6168 414 0 0 0 chr13 55053967 55054013 -64690885 + (TG)n Simple_repeat Simple_repeat 1 46 0 1926 101 56 7 chr13 55054118 55054404 -64690494 + AluSq SINE Alu 1 300 -13 864 181 119 0 chr13 55054559 55054752 -64690146 - L1MA9 LINE L1 -201 6111 5896 213 326 58 0 chr13 55055326 55055412 -64689486 + MIR SINE MIR 49 139 -123 27 62 0 0 chr13 55055540 55055588 -64689310 + AT_rich Low_complexity Low_complexity 1 48 0 4323 171 14 21 chr13 55056055 55056854 -64688044 - MER54B LTR ERVL 0 793 1 35 24 0 0 chr13 55057559 55057601 -64687297 + AT_rich Low_complexity Low_complexity 1 42 0 1878 133 7 3 chr13 55057667 55057952 -64686946 + AluSx SINE Alu 1 286 -26 208 176 20 0 chr13 55058603 55058654 -64686244 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 289 244 26 13 chr13 55058798 55058876 -64686022 - MLT1L LTR MaLR -530 85 7 1075 224 7 17 chr13 55059671 55059939 -64684959 + L1MCa LINE L1 1640 1890 -4494 1469 283 70 13 chr13 55060060 55060672 -64684226 - L1M4c LINE L1 -4511 1873 1227 1323 193 46 39 chr13 55060673 55060958 -64683940 - AluJo SINE Alu -20 292 6 1261 263 21 18 chr13 55060962 55061528 -64683370 - L1M3c LINE L1 -4658 1483 826 26 0 0 0 chr13 55061763 55061789 -64683109 + AT_rich Low_complexity Low_complexity 1 26 0 3173 79 7 11 chr13 55061789 55062244 -64682654 - L1PA8 LINE L1 0 6172 5720 9764 99 5 1 chr13 55062244 55063913 -64680985 + L1P3 LINE L1 3952 5624 -530 2434 113 49 24 chr13 55064337 55064763 -64680135 - LTR23 LTR ERV1 0 437 1 26 30 0 0 chr13 55065238 55065271 -64679627 + AT_rich Low_complexity Low_complexity 1 33 0 1649 178 168 11 chr13 55065532 55065902 -64678996 + MSTA LTR MaLR 1 428 0 8628 171 12 20 chr13 55065904 55067495 -64677403 + MSTA-int LTR MaLR 3 1580 0 1725 176 122 13 chr13 55067495 55067881 -64677017 + MSTA LTR MaLR 1 428 0 852 274 111 33 chr13 55069119 55069481 -64675417 - LTR16A1 LTR ERVL -12 445 56 847 172 16 11 chr13 55070003 55070189 -64674709 - MER53 DNA DNA -2 187 1 1073 119 0 34 chr13 55071333 55071510 -64673388 - AluY SINE Alu 0 311 141 915 118 30 0 chr13 55071949 55072118 -64672780 + CT-rich Low_complexity Low_complexity 1 174 0 1188 61 11 22 chr13 55072118 55072298 -64672600 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 7055 43 6 0 chr13 55072602 55073480 -64671418 + L1PA4 LINE L1 5272 6154 -1 250 354 30 15 chr13 55073928 55074126 -64670772 + HAL1 LINE L1 1472 1672 -835 22 94 0 0 chr13 55074603 55074667 -64670231 + AT_rich Low_complexity Low_complexity 1 64 0 31 0 0 0 chr13 55075538 55075569 -64669329 + AT_rich Low_complexity Low_complexity 1 31 0 300 300 56 22 chr13 55075917 55076097 -64668801 + L1M4 LINE L1 4974 5159 -987 1107 185 5 40 chr13 55076138 55076360 -64668538 - AluJo SINE Alu -98 214 1 686 169 0 52 chr13 55077321 55077457 -64667441 - MLT1B LTR MaLR -261 129 1 239 298 131 0 chr13 55077627 55077711 -64667187 + MER5B DNA MER1_type 4 98 -80 485 301 45 49 chr13 55078110 55078376 -64666522 + MLT1J LTR MaLR 2 266 -245 22 35 0 0 chr13 55078697 55078726 -64666172 + AT_rich Low_complexity Low_complexity 1 29 0 221 360 47 59 chr13 55079716 55079896 -64665002 - MIR SINE MIR 0 262 84 1967 160 8 39 chr13 55079896 55080283 -64664615 - THE1C LTR MaLR 0 375 1 221 360 47 59 chr13 55080283 55080355 -64664543 - MIR SINE MIR -178 84 13 967 226 5 18 chr13 55080505 55080722 -64664176 + MER58A DNA MER1_type 1 214 -10 696 264 61 4 chr13 55080790 55081036 -64663862 + MER69 DNA AcHobo 2102 2361 -165 3986 158 23 18 chr13 55082781 55082847 -64662051 + MER50 LTR ERV1 1 65 -669 1801 203 32 7 chr13 55082847 55083286 -64661612 - LTR7 LTR ERV1 0 450 1 3986 158 23 18 chr13 55083286 55083927 -64660971 + MER50 LTR ERV1 65 711 -23 26 50 0 0 chr13 55084006 55084046 -64660852 + AT_rich Low_complexity Low_complexity 1 40 0 3411 153 58 16 chr13 55084046 55084715 -64660183 - LTR34 LTR ERV1 -2 697 1 23 0 0 0 chr13 55084912 55084935 -64659963 + AT_rich Low_complexity Low_complexity 1 23 0 2194 167 98 43 chr13 55085150 55085714 -64659184 - LTR49 LTR ERV1 0 595 1 3851 168 25 17 chr13 55086405 55087120 -64657778 - MER72 LTR ERV1 0 722 2 225 333 58 0 chr13 55087209 55087296 -64657602 + L2 LINE L2 3208 3299 -14 33 25 0 0 chr13 55087319 55087359 -64657539 + AT_rich Low_complexity Low_complexity 1 40 0 2040 149 0 0 chr13 55087401 55087697 -64657201 + AluSq SINE Alu 1 296 -17 269 309 0 37 chr13 55087699 55087780 -64657118 + MIR SINE MIR 21 98 -164 281 254 34 51 chr13 55087993 55088111 -64656787 - MLT1I LTR MaLR -208 201 86 21 0 0 0 chr13 55088763 55088784 -64656114 + AT_rich Low_complexity Low_complexity 1 21 0 214 182 0 0 chr13 55089637 55089681 -64655217 + A-rich Low_complexity Low_complexity 3 46 0 4435 170 58 16 chr13 55089837 55090723 -64654175 - MER49 LTR ERV1 0 923 1 3078 133 10 2 chr13 55091132 55091642 -64653256 + L1MA4 LINE L1 5783 6296 -4 234 352 152 26 chr13 55091918 55092182 -64652716 + L2 LINE L2 846 1142 -2172 260 363 76 51 chr13 55092270 55092390 -64652508 + L2 LINE L2 1479 1594 -1720 2285 118 0 3 chr13 55092390 55092704 -64652194 - AluSp SINE Alu 0 313 1 260 363 76 51 chr13 55092704 55093018 -64651880 + L2 LINE L2 1594 1924 -1390 371 286 10 69 chr13 55093056 55093259 -64651639 + L2 LINE L2 3099 3289 -24 824 341 73 64 chr13 55093347 55094414 -64650484 + L2 LINE L2 1997 3078 -194 1979 139 33 0 chr13 55094481 55094783 -64650115 - AluSx SINE Alu 0 312 1 187 296 28 120 chr13 55094849 55094957 -64649941 + L2 LINE L2 3170 3267 -5 181 311 0 33 chr13 55095916 55095977 -64648921 - L3 LINE CR1 -70 1507 1449 26 64 0 0 chr13 55095987 55096034 -64648864 + AT_rich Low_complexity Low_complexity 1 47 0 443 289 105 87 chr13 55096903 55097283 -64647615 + HAL1 LINE L1 757 1143 -1364 32 26 0 0 chr13 55097289 55097328 -64647570 + AT_rich Low_complexity Low_complexity 1 39 0 2059 84 9 56 chr13 55097690 55098013 -64646885 + AluY SINE Alu 4 311 0 915 245 98 27 chr13 55098705 55099018 -64645880 - MLT1C LTR MaLR -26 441 128 2266 97 7 3 chr13 55099018 55099328 -64645570 + AluSx SINE Alu 2 312 0 915 245 98 27 chr13 55099328 55099434 -64645464 - MLT1C LTR MaLR -339 128 31 27 0 0 0 chr13 55099491 55099518 -64645380 + AT_rich Low_complexity Low_complexity 1 27 0 242 225 11 56 chr13 55099683 55099772 -64645126 + Charlie8 DNA MER1_type 712 796 -1621 1879 148 3 3 chr13 55100365 55100672 -64644226 - AluSq SINE Alu 0 307 1 208 83 42 21 chr13 55100872 55100920 -64643978 + A-rich Low_complexity Low_complexity 5 53 0 466 284 158 5 chr13 55101371 55101561 -64643337 - MER20 DNA MER1_type 0 219 1 25 0 0 0 chr13 55101577 55101602 -64643296 + AT_rich Low_complexity Low_complexity 1 25 0 202 320 40 0 chr13 55102152 55102202 -64642696 - L3b LINE CR1 -12 1571 1520 22 35 0 0 chr13 55102870 55102899 -64641999 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 55103023 55103044 -64641854 + AT_rich Low_complexity Low_complexity 1 21 0 346 311 205 15 chr13 55103049 55103380 -64641518 - L1M4 LINE L1 -1975 4171 3778 987 198 75 0 chr13 55103386 55103598 -64641300 - L1PA16 LINE L1 -2 6164 5937 1079 265 164 78 chr13 55103600 55104603 -64640295 - MER52A LTR ERV1 0 1755 666 2102 139 24 3 chr13 55104611 55104950 -64639948 - L1PA16 LINE L1 -229 5937 5592 512 289 233 26 chr13 55104951 55105525 -64639373 - L1M4 LINE L1 -2387 3759 3067 25 31 0 0 chr13 55105541 55105573 -64639325 + AT_rich Low_complexity Low_complexity 1 32 0 2348 59 0 10 chr13 55105628 55105934 -64638964 - AluY SINE Alu -8 303 1 31 26 0 0 chr13 55106761 55106799 -64638099 + AT_rich Low_complexity Low_complexity 1 38 0 317 291 10 118 chr13 55107244 55107447 -64637451 + MIR SINE MIR 11 191 -71 267 333 55 20 chr13 55107582 55107752 -64637146 + MIR SINE MIR 14 252 -10 2412 71 0 0 chr13 55107767 55108077 -64636821 + AluY SINE Alu 1 310 -1 25 83 0 0 chr13 55108078 55108138 -64636760 + AT_rich Low_complexity Low_complexity 1 60 0 247 203 34 0 chr13 55108293 55108352 -64636546 - MLT1A1 LTR MaLR -5 360 300 314 132 59 44 chr13 55108824 55108892 -64636006 + MER67D LTR ERV1 445 513 -1 1674 217 14 28 chr13 55108921 55109285 -64635613 - MLT1A1 LTR MaLR -2 363 5 31 68 0 0 chr13 55110646 55110705 -64634193 + AT_rich Low_complexity Low_complexity 1 59 0 249 282 60 23 chr13 55112122 55112214 -64632684 - MIR SINE MIR -63 145 59 23 54 0 0 chr13 55112671 55112708 -64632190 + AT_rich Low_complexity Low_complexity 1 37 0 3848 175 64 25 chr13 55113807 55114634 -64630264 + MER6 DNA MER2_type 4 862 -3 25 0 0 0 chr13 55114686 55114711 -64630187 + AT_rich Low_complexity Low_complexity 1 25 0 250 304 154 61 chr13 55116544 55116758 -64628140 - MIR SINE MIR -1 261 28 508 172 8 8 chr13 55117059 55117181 -64627717 + (TA)n Simple_repeat Simple_repeat 1 122 0 672 290 60 54 chr13 55118349 55118888 -64626010 - MLT1G3 LTR MaLR 0 585 14 24 32 0 0 chr13 55119530 55119561 -64625337 + AT_rich Low_complexity Low_complexity 1 31 0 357 305 0 8 chr13 55119917 55120048 -64624850 - MLT1-int LTR MaLR -814 557 428 14190 151 15 15 chr13 55120452 55121719 -64623179 + Tigger1 DNA MER2_type 1 1267 -1151 2047 136 0 0 chr13 55121719 55122029 -64622869 - L1PA16 LINE L1 -9 6157 5848 14190 151 15 15 chr13 55122029 55122139 -64622759 + Tigger1 DNA MER2_type 1267 1376 -1042 4095 166 72 49 chr13 55122139 55123186 -64621712 - MER11C LTR ERVK 0 1071 1 14190 151 15 15 chr13 55123186 55124226 -64620672 + Tigger1 DNA MER2_type 1376 2418 0 228 242 33 77 chr13 55124322 55124413 -64620485 - MLT1A1 LTR MaLR -315 215 129 * 562 285 8 73 chr13 55124381 55124627 -64620271 - MLT1G1 LTR MaLR -361 234 5 245 232 0 14 chr13 55127473 55127542 -64617356 + MLT1D LTR MaLR 180 247 -258 655 247 1 13 chr13 55127558 55127724 -64617174 + MLT1D LTR MaLR 357 505 0 5686 169 9 18 chr13 55127830 55128502 -64616396 - L1PA15 LINE L1 -31 6134 5458 1877 149 3 10 chr13 55128502 55128811 -64616087 - AluSg SINE Alu -3 307 1 5686 169 9 18 chr13 55128811 55129088 -64615810 - L1PA15 LINE L1 -707 5458 5180 1244 139 65 0 chr13 55129088 55129303 -64615595 - MER30 DNA MER1_type 0 230 2 5686 169 9 18 chr13 55129303 55130283 -64614615 - L1PA15 LINE L1 -985 5180 4228 22 0 0 0 chr13 55130449 55130471 -64614427 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 55131662 55131684 -64613214 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2219 69 7 0 chr13 55131686 55131962 -64612936 - AluY SINE Alu -33 278 1 21 36 0 0 chr13 55132799 55132827 -64612071 + AT_rich Low_complexity Low_complexity 1 28 0 2047 129 0 0 chr13 55134050 55134367 -64610531 + AluSp SINE Alu 1 317 0 23 0 0 0 chr13 55134591 55134614 -64610284 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 55135111 55135132 -64609766 + AT_rich Low_complexity Low_complexity 1 21 0 186 205 51 64 chr13 55135287 55135365 -64609533 - MIR SINE MIR 0 262 186 222 275 0 0 chr13 55137884 55137964 -64606934 + (TA)n Simple_repeat Simple_repeat 1 80 0 200 338 0 0 chr13 55138022 55138090 -64606808 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 22 56 0 0 chr13 55139034 55139070 -64605828 + AT_rich Low_complexity Low_complexity 1 36 0 813 245 48 36 chr13 55139442 55139691 -64605207 + LTR12 LTR ERV1 238 489 -225 29 0 0 0 chr13 55139749 55139778 -64605120 + AT_rich Low_complexity Low_complexity 1 29 0 330 314 65 8 chr13 55140398 55140522 -64604376 + L2 LINE L2 3183 3313 0 3582 99 57 37 chr13 55140676 55141274 -64603624 - MER4B LTR ERV1 0 610 1 512 165 28 9 chr13 55141331 55141440 -64603458 + MLT2D LTR ERVL 5 115 -349 410 271 0 9 chr13 55141450 55141563 -64603335 - L1PB4 LINE L1 -4 6150 6045 3445 55 0 9 chr13 55141576 55142028 -64602870 - LTR7 LTR ERV1 -2 448 1 2503 82 45 13 chr13 55142028 55142408 -64602490 - HERVH LTR ERV1 0 7713 7322 1320 124 20 0 chr13 55142406 55142607 -64602291 - HERVH LTR ERV1 -1894 5819 5615 * 4288 142 1 1 chr13 55142638 55143300 -64601598 - HERVH LTR ERV1 -2564 5149 4488 3322 113 2 6 chr13 55143302 55143806 -64601092 - HERVH LTR ERV1 -3720 3993 3492 831 115 6 39 chr13 55143796 55143952 -64600946 - HERVH LTR ERV1 -4423 3290 3140 * 15237 86 6 28 chr13 55143931 55146998 -64597900 - HERVH LTR ERV1 -4718 2995 1 3324 72 11 7 chr13 55147000 55147446 -64597452 - LTR7 LTR ERV1 -2 448 1 1161 240 3 16 chr13 55147491 55147759 -64597139 + MLT2D LTR ERVL 111 469 -46 22 56 0 0 chr13 55147918 55147954 -64596944 + AT_rich Low_complexity Low_complexity 1 36 0 897 233 33 14 chr13 55148091 55148306 -64596592 + LTR1B LTR ERV1 1 219 -607 1979 152 28 60 chr13 55148311 55148797 -64596101 - MER4D LTR ERV1 -260 631 50 1237 189 114 4 chr13 55148784 55149038 -64595860 - MER49 LTR ERV1 -641 282 1 * 1394 231 42 68 chr13 55149065 55149564 -64595334 + MLT1D LTR MaLR 20 505 0 368 356 16 37 chr13 55150111 55150302 -64594596 - L2 LINE L2 0 3313 3127 3022 153 50 19 chr13 55150719 55151244 -64593654 + LTR38B LTR ERV1 9 555 -55 2101 107 24 3 chr13 55151244 55151542 -64593356 - AluSq SINE Alu -9 304 1 3022 153 50 19 chr13 55151542 55151592 -64593306 + LTR38B LTR ERV1 555 602 -8 1115 218 52 55 chr13 55152384 55152710 -64592188 - MLT1B LTR MaLR 0 390 66 180 0 0 0 chr13 55152859 55152879 -64592019 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 55152995 55153019 -64591879 + AT_rich Low_complexity Low_complexity 1 24 0 226 258 156 0 chr13 55153657 55153744 -64591154 + MIR SINE MIR 35 135 -73 28 48 0 0 chr13 55153883 55153925 -64590973 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr13 55154328 55154356 -64590542 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 55155419 55155459 -64589439 + AT_rich Low_complexity Low_complexity 1 40 0 377 42 0 0 chr13 55155610 55155658 -64589240 + AluY SINE Alu 1 48 -252 1087 280 25 12 chr13 55155945 55156266 -64588632 - L1MDb LINE L1 -6077 332 8 24 0 0 0 chr13 55156327 55156351 -64588547 + AT_rich Low_complexity Low_complexity 1 24 0 926 285 29 31 chr13 55156980 55157432 -64587466 + Charlie4a DNA MER1_type 40 490 -18 2109 126 3 7 chr13 55157485 55157786 -64587112 + AluSx SINE Alu 1 300 -12 798 307 54 37 chr13 55157790 55158275 -64586623 + HAL1 LINE L1 69 561 -1946 631 307 137 24 chr13 55158911 55159335 -64585563 + HAL1 LINE L1 615 1086 -1421 223 353 113 54 chr13 55159459 55159779 -64585119 - L3 LINE CR1 -185 1392 1033 550 255 107 20 chr13 55159779 55159975 -64584923 - MER58C DNA MER1_type -2 213 1 223 353 113 54 chr13 55159975 55160133 -64584765 - L3 LINE CR1 -544 1033 886 395 313 69 6 chr13 55160228 55160244 -64584654 - MER58B DNA MER1_type -2079 341 327 222 91 0 0 chr13 55160244 55160277 -64584621 + (TTA)n Simple_repeat Simple_repeat 1 33 0 395 313 69 6 chr13 55160277 55160420 -64584478 - MER58B DNA MER1_type -2093 327 172 23 0 0 0 chr13 55160963 55160986 -64583912 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 55161382 55161403 -64583495 + AT_rich Low_complexity Low_complexity 1 21 0 371 215 19 37 chr13 55161469 55161576 -64583322 - MER3 DNA MER1_type -14 195 91 21 36 0 0 chr13 55161600 55161628 -64583270 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr13 55161889 55161926 -64582972 + AT_rich Low_complexity Low_complexity 1 37 0 274 292 193 19 chr13 55162035 55162196 -64582702 + MER5A DNA MER1_type 1 189 0 902 239 67 122 chr13 55162681 55162961 -64581937 - MER67D LTR ERV1 -8 506 267 2027 133 89 9 chr13 55162961 55163298 -64581600 + THE1B LTR MaLR 1 364 0 902 239 67 122 chr13 55163298 55163552 -64581346 - MER67D LTR ERV1 -247 267 1 240 394 49 0 chr13 55163725 55163867 -64581031 - MIR3 SINE MIR -14 194 46 212 250 0 0 chr13 55165269 55165317 -64579581 + (CATA)n Simple_repeat Simple_repeat 3 50 0 22 35 0 0 chr13 55166295 55166324 -64578574 + AT_rich Low_complexity Low_complexity 1 29 0 1290 147 79 7 chr13 55167139 55167418 -64577480 - L1MA8 LINE L1 -1 6290 5992 1820 272 68 79 chr13 55167668 55169731 -64575167 + L1M2 LINE L1 1 1756 -5453 3557 58 0 2 chr13 55169738 55170187 -64574711 - LTR7 LTR ERV1 -2 448 1 2547 76 45 13 chr13 55170187 55170567 -64574331 - HERVH LTR ERV1 0 7713 7322 1327 121 20 0 chr13 55170567 55170766 -64574132 - HERVH LTR ERV1 -1896 5817 5615 4395 138 1 1 chr13 55170796 55171458 -64573440 - HERVH LTR ERV1 -2564 5149 4488 3407 112 4 2 chr13 55171460 55171961 -64572937 - HERVH LTR ERV1 -3720 3993 3492 1005 107 7 0 chr13 55171951 55172101 -64572797 - HERVH LTR ERV1 -4423 3290 3140 * 19832 99 7 34 chr13 55172080 55175157 -64569741 - HERVH LTR ERV1 -4718 2995 1 3694 40 0 2 chr13 55175159 55175608 -64569290 - LTR7 LTR ERV1 -2 448 1 1120 186 86 0 chr13 55175611 55175832 -64569066 + L1M2 LINE L1 1773 2012 -5197 1318 199 32 34 chr13 55175838 55176196 -64568702 - MER67C LTR ERV1 -249 265 1 21 0 0 0 chr13 55176726 55176747 -64568151 + AT_rich Low_complexity Low_complexity 1 21 0 327 146 0 0 chr13 55176770 55176825 -64568073 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 2118 121 21 0 chr13 55176876 55177166 -64567732 + AluSg SINE Alu 1 296 -14 1170 186 12 12 chr13 55177430 55177688 -64567210 - L1MA4A LINE L1 -362 5941 5684 1986 75 14 4 chr13 55177691 55177970 -64566928 + MER41B LTR ERV1 1 282 -353 25 83 0 0 chr13 55178084 55178144 -64566754 + AT_rich Low_complexity Low_complexity 1 60 0 309 330 80 24 chr13 55179197 55179409 -64565489 - L2 LINE L2 -9 3304 3081 24 77 0 0 chr13 55179997 55180049 -64564849 + AT_rich Low_complexity Low_complexity 1 52 0 210 222 16 32 chr13 55180847 55180910 -64563988 + CT-rich Low_complexity Low_complexity 4 65 0 34 79 0 0 chr13 55181802 55181878 -64563020 + AT_rich Low_complexity Low_complexity 1 76 0 22 0 0 0 chr13 55182726 55182748 -64562150 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 55183076 55183100 -64561798 + AT_rich Low_complexity Low_complexity 1 24 0 463 148 9 37 chr13 55183914 55184022 -64560876 + L1 LINE L1 5116 5220 -926 1875 153 7 0 chr13 55184172 55184459 -64560439 + AluSx SINE Alu 24 312 0 243 338 99 10 chr13 55184488 55184893 -64560005 + L1M4 LINE L1 4400 4840 -1306 28 48 0 0 chr13 55185118 55185160 -64559738 + AT_rich Low_complexity Low_complexity 1 42 0 2847 94 6 15 chr13 55185522 55185925 -64558973 + MLT2A1 LTR ERVL 1 517 -37 38343 101 13 5 chr13 55185925 55191240 -64553658 + HERVL-A1 LTR ERVL 207 5564 -90 1130 185 5 40 chr13 55192072 55192294 -64552604 + AluJo SINE Alu 1 214 -98 31 0 0 0 chr13 55192861 55192892 -64552006 + AT_rich Low_complexity Low_complexity 1 31 0 219 36 0 0 chr13 55193968 55193996 -64550902 + (GA)n Simple_repeat Simple_repeat 2 29 0 1518 190 39 3 chr13 55194999 55195283 -64549615 - AluSx SINE Alu -18 294 1 27 68 0 34 chr13 55196016 55196077 -64548821 + AT_rich Low_complexity Low_complexity 1 60 -25 2449 71 0 0 chr13 55196077 55196387 -64548511 - AluY SINE Alu -1 310 1 27 68 0 34 chr13 55196387 55196413 -64548485 + AT_rich Low_complexity Low_complexity 60 85 0 * 273 313 31 20 chr13 55196402 55196572 -64548326 - MIR SINE MIR -10 252 14 317 291 10 118 chr13 55196707 55196910 -64547988 - MIR SINE MIR -71 191 11 31 26 0 0 chr13 55197356 55197394 -64547504 + AT_rich Low_complexity Low_complexity 1 38 0 1548 204 22 18 chr13 55198302 55198747 -64546151 - LTR7 LTR ERV1 -2 448 2 1047 252 3 17 chr13 55198799 55199062 -64545836 + MLT2D LTR ERVL 116 469 -46 22 56 0 0 chr13 55199221 55199257 -64545641 + AT_rich Low_complexity Low_complexity 1 36 0 861 237 33 14 chr13 55199393 55199608 -64545290 + LTR1B LTR ERV1 1 219 -607 1940 141 22 150 chr13 55199613 55200340 -64544558 - MER4D LTR ERV1 -260 631 1 1313 237 44 66 chr13 55200367 55200864 -64544034 + MLT1D LTR MaLR 20 505 0 250 363 12 50 chr13 55201412 55201572 -64543326 - L2 LINE L2 0 3313 3160 2182 246 31 12 chr13 55201840 55202412 -64542486 + Charlie8 DNA MER1_type 1522 2104 -313 22 70 0 0 chr13 55202658 55202701 -64542197 + AT_rich Low_complexity Low_complexity 1 43 0 1242 220 18 32 chr13 55202716 55202853 -64542045 - AluJb SINE Alu 0 321 184 1916 153 82 15 chr13 55202853 55203194 -64541704 + THE1B LTR MaLR 1 364 0 1242 220 18 32 chr13 55203194 55203376 -64541522 - AluJb SINE Alu -137 184 6 238 293 0 0 chr13 55203383 55203458 -64541440 + Charlie8 DNA MER1_type 2341 2415 -2 14478 187 28 35 chr13 55204104 55204447 -64540451 + L1M1 LINE L1 1 345 -7220 425 102 0 0 chr13 55204447 55204506 -64540392 + AluJ/FLAM SINE Alu 1 59 -253 14478 187 28 35 chr13 55204506 55206959 -64537939 + L1M1 LINE L1 345 2837 -4728 216 0 0 0 chr13 55206959 55206983 -64537915 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 14478 187 28 35 chr13 55206983 55207028 -64537870 + L1M1 LINE L1 2837 2881 -4684 463 144 56 0 chr13 55207057 55207147 -64537751 + L1MA1 LINE L1 6206 6300 -2 1761 301 57 21 chr13 55207743 55208576 -64536322 - L1MC4 LINE L1 -137 7905 6867 2030 126 0 17 chr13 55208576 55208878 -64536020 - AluSx SINE Alu -15 297 1 1761 301 57 21 chr13 55208878 55209211 -64535687 - L1MC4 LINE L1 -1175 6867 6548 514 307 74 20 chr13 55209733 55209977 -64534921 + MIR SINE MIR 6 262 0 22 0 0 0 chr13 55210157 55210179 -64534719 + AT_rich Low_complexity Low_complexity 1 22 0 264 316 86 0 chr13 55211645 55211762 -64533136 - L2 LINE L2 -6 3307 3181 224 310 35 11 chr13 55211747 55211834 -64533064 + MIR SINE MIR 76 164 -98 * 891 53 0 0 chr13 55212433 55212546 -64532352 + (TTC)n Simple_repeat Simple_repeat 2 114 0 467 239 17 62 chr13 55212760 55212936 -64531962 - MLT1B LTR MaLR -217 173 6 239 298 131 0 chr13 55213111 55213195 -64531703 + MER5B DNA MER1_type 4 98 -80 502 297 45 49 chr13 55213594 55213860 -64531038 + MLT1J LTR MaLR 2 266 -245 22 35 0 0 chr13 55214181 55214210 -64530688 + AT_rich Low_complexity Low_complexity 1 29 0 1933 170 8 35 chr13 55215390 55215761 -64529137 - THE1C LTR MaLR 0 375 15 455 283 0 23 chr13 55216025 55216202 -64528696 + MER58A DNA MER1_type 27 199 -25 988 195 6 0 chr13 55216345 55216514 -64528384 - AluSx SINE Alu -140 172 3 200 325 35 26 chr13 55216904 55217018 -64527880 - MIR SINE MIR -32 230 116 320 330 200 5 chr13 55217183 55217383 -64527515 + MIR SINE MIR 12 250 -12 23 33 0 0 chr13 55217702 55217732 -64527166 + AT_rich Low_complexity Low_complexity 1 30 0 245 212 0 15 chr13 55218689 55218755 -64526143 + (TA)n Simple_repeat Simple_repeat 2 66 0 390 267 0 0 chr13 55218755 55218845 -64526053 - L1MC4 LINE L1 -1339 6703 6614 4582 163 16 32 chr13 55221188 55221856 -64523042 + L1PB4 LINE L1 5198 5875 -281 243 0 0 0 chr13 55221856 55221883 -64523015 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1830 139 0 18 chr13 55221889 55222170 -64522728 - AluSx SINE Alu -36 276 1 4582 163 16 32 chr13 55222170 55222464 -64522434 + L1PB4 LINE L1 5880 6153 -3 198 0 0 0 chr13 55222792 55222814 -64522084 + (A)n Simple_repeat Simple_repeat 1 22 0 643 285 29 84 chr13 55222953 55223450 -64521448 + L1ME LINE L1 278 749 -5321 1364 286 34 79 chr13 55223506 55224437 -64520461 + L1M4 LINE L1 3837 4733 -1413 775 275 62 47 chr13 55225669 55226117 -64518781 - L1MA7 LINE L1 -64 6227 5773 655 181 107 17 chr13 55226217 55226394 -64518504 - L1MA6 LINE L1 -6 6294 6102 * 907 237 28 31 chr13 55226367 55226654 -64518244 - L1M4 LINE L1 -391 6588 6303 305 248 20 74 chr13 55226657 55226806 -64518092 - L1M4 LINE L1 -3261 3680 3540 32 0 0 0 chr13 55227375 55227407 -64517491 + AT_rich Low_complexity Low_complexity 1 32 0 40 79 0 0 chr13 55228205 55228294 -64516604 + AT_rich Low_complexity Low_complexity 1 89 0 41 72 0 0 chr13 55228432 55228515 -64516383 + AT_rich Low_complexity Low_complexity 1 83 0 836 298 19 28 chr13 55228566 55228888 -64516010 - L1M4 LINE L1 -6006 417 99 18202 91 6 3 chr13 55228923 55232312 -64512586 - L1PA7 LINE L1 -5 6149 2750 789 206 25 5 chr13 55233002 55233206 -64511692 - L1MA4 LINE L1 0 6300 6093 195 175 50 0 chr13 55233231 55233271 -64511627 + L2 LINE L2 3272 3313 0 2113 195 21 88 chr13 55233438 55234017 -64510881 - MLT2B3 LTR ERVL 0 554 15 1894 79 9 0 chr13 55234100 55234527 -64510371 + L1PA8 LINE L1 5670 6170 -2 1745 188 56 51 chr13 55234756 55235188 -64509710 + MER67D LTR ERV1 1 434 -80 317 272 117 19 chr13 55235254 55235416 -64509482 + MIR SINE MIR 41 218 -44 25 0 0 0 chr13 55236223 55236248 -64508650 + AT_rich Low_complexity Low_complexity 1 25 0 637 119 20 0 chr13 55237476 55237577 -64507321 + AluSg/x SINE Alu 197 299 -13 636 320 51 27 chr13 55237749 55238005 -64506893 + MIR SINE MIR 1 262 0 2908 236 83 48 chr13 55238433 55239592 -64505306 - L1MCa LINE L1 -4865 1180 9 1691 128 92 14 chr13 55240971 55241253 -64503645 + AluSx SINE Alu 1 304 -8 277 317 67 8 chr13 55243157 55243277 -64501621 + L2 LINE L2 3187 3313 0 21 82 0 0 chr13 55243702 55243751 -64501147 + AT_rich Low_complexity Low_complexity 1 49 0 237 193 11 23 chr13 55243808 55243896 -64501002 + GA-rich Low_complexity Low_complexity 1 87 0 3649 229 57 52 chr13 55244936 55246109 -64498789 - L1MC3 LINE L1 -40 7745 6567 702 244 33 58 chr13 55246131 55246423 -64498475 - L1MCa LINE L1 -4400 2026 1799 553 231 64 112 chr13 55246423 55246844 -64498054 + L1ME1 LINE L1 3850 4240 -1906 2044 233 26 4 chr13 55247201 55247741 -64497157 + L1M2 LINE L1 2269 2820 -4029 8958 204 30 26 chr13 55247751 55250189 -64494709 + L1P5 LINE L1 3047 5484 -667 21 36 0 0 chr13 55250193 55250221 -64494677 + AT_rich Low_complexity Low_complexity 1 28 0 234 186 0 0 chr13 55250276 55250319 -64494579 - L1 LINE L1 -1932 4214 4172 1346 244 89 36 chr13 55250353 55250882 -64494016 + L1ME1 LINE L1 5351 5907 -259 351 206 43 22 chr13 55250985 55251077 -64493821 + L1MB7 LINE L1 6080 6173 -11 386 275 285 0 chr13 55251224 55251417 -64493481 + MIR SINE MIR 15 262 0 1759 223 69 13 chr13 55251458 55252010 -64492888 - L1MD3 LINE L1 -237 7758 6975 761 260 11 6 chr13 55252010 55252191 -64492707 + MLT1D LTR MaLR 1 182 -323 1145 240 31 3 chr13 55252243 55252530 -64492368 - L1ME1 LINE L1 -206 5960 5666 1410 243 68 138 chr13 55252871 55253456 -64491442 + MLT1E LTR MaLR 45 591 -2 253 268 278 0 chr13 55253466 55253563 -64491335 - MER91C DNA MER1_type -11 129 6 321 338 40 27 chr13 55253728 55253876 -64491022 - MIR3 SINE MIR -31 177 60 627 239 14 0 chr13 55254176 55254318 -64490580 + LTR40a LTR ERVL 3 146 -373 16179 32 5 0 chr13 55254496 55257217 -64487681 + L1PA4 LINE L1 3408 6147 -8 2264 64 7 24 chr13 55257357 55257655 -64487243 + AluY SINE Alu 1 293 -18 201 74 0 0 chr13 55257719 55257746 -64487152 + (TA)n Simple_repeat Simple_repeat 1 27 0 1327 123 199 36 chr13 55259865 55260166 -64484732 - MSTA LTR MaLR 0 428 79 189 74 0 0 chr13 55260376 55260403 -64484495 + (TG)n Simple_repeat Simple_repeat 2 28 0 1393 244 121 26 chr13 55261984 55262447 -64482451 - LTR40a LTR ERVL -12 507 1 1373 275 19 123 chr13 55364515 55365414 -64379484 + MSTC-int LTR MaLR 259 1063 -308 1612 59 10 0 chr13 55365414 55365617 -64379281 - AluY SINE Alu -4 307 103 827 160 0 26 chr13 55365717 55365873 -64379025 + AluSg/x SINE Alu 159 310 0 201 121 0 0 chr13 55365873 55365906 -64378992 + (TA)n Simple_repeat Simple_repeat 2 34 0 264 132 57 19 chr13 55366112 55366218 -64378680 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 25 90 0 0 chr13 55366371 55366438 -64378460 + AT_rich Low_complexity Low_complexity 1 67 0 29 60 0 0 chr13 55366927 55366977 -64377921 + AT_rich Low_complexity Low_complexity 1 50 0 640 276 97 17 chr13 55368075 55368426 -64376472 + L1M4 LINE L1 4899 5277 -869 349 98 0 0 chr13 55368427 55368478 -64376420 - AluSc SINE Alu -4 295 245 379 148 16 0 chr13 55368578 55368639 -64376259 - AluS SINE Alu -239 62 1 21 0 0 0 chr13 55368645 55368666 -64376232 + AT_rich Low_complexity Low_complexity 1 21 0 444 312 40 15 chr13 55369071 55369270 -64375628 + LTR68 LTR ERV1 237 440 -300 508 325 72 29 chr13 55369619 55370136 -64374762 - MLT1H1 LTR MaLR 0 555 1 207 114 0 0 chr13 55370704 55370739 -64374159 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr13 55371185 55371224 -64373674 + AT_rich Low_complexity Low_complexity 1 39 0 554 260 83 27 chr13 55371953 55372291 -64372607 - L1MC5 LINE L1 -99 7862 7506 3684 208 35 9 chr13 55372369 55373209 -64371689 - L1MB7 LINE L1 -19 6165 5305 330 303 17 50 chr13 55373209 55373328 -64371570 - MIR SINE MIR -115 147 33 8891 152 65 12 chr13 55373491 55374178 -64370720 - Tigger1 DNA MER2_type -187 2231 1582 2076 180 7 53 chr13 55374178 55374627 -64370271 + MSTC LTR MaLR 1 428 0 8891 152 65 12 chr13 55374627 55375548 -64369350 - Tigger1 DNA MER2_type -836 1582 538 1226 200 105 24 chr13 55375550 55375845 -64369053 - Tigger1 DNA MER2_type -2099 319 1 219 36 0 0 chr13 55376240 55376268 -64368630 + (A)n Simple_repeat Simple_repeat 1 28 0 1178 298 129 11 chr13 55376660 55376804 -64368094 - L1MEc LINE L1 -2291 3924 3798 1408 229 26 7 chr13 55376804 55377110 -64367788 - AluJo SINE Alu 0 312 1 1178 298 129 11 chr13 55377110 55377851 -64367047 - L1MEc LINE L1 -2417 3798 2935 934 291 63 15 chr13 55377849 55378448 -64366450 - L1MEc LINE L1 -3616 2599 2019 * 331 311 44 0 chr13 55378861 55378951 -64365947 - AluJ/FLAM SINE Alu -207 95 2 238 267 0 0 chr13 55378960 55379020 -64365878 - L1 LINE L1 -2471 3675 3616 217 156 0 22 chr13 55379147 55379192 -64365706 + T-rich Low_complexity Low_complexity 5 48 0 21 0 0 0 chr13 55379711 55379732 -64365166 + AT_rich Low_complexity Low_complexity 1 21 0 2115 105 0 7 chr13 55379732 55380058 -64364840 + AluSp SINE Alu 1 324 0 639 205 18 0 chr13 55380058 55380196 -64364702 - L1PB4 LINE L1 -8 6158 6016 183 234 43 21 chr13 55380429 55380476 -64364422 + MER5A DNA MER1_type 122 169 -20 405 0 0 0 chr13 55380908 55380953 -64363945 + (TG)n Simple_repeat Simple_repeat 1 45 0 603 333 12 4 chr13 55381423 55381672 -64363226 - L1ME LINE L1 -342 5779 5529 211 327 71 9 chr13 55382227 55382340 -64362558 + L2 LINE L2 3153 3272 0 839 101 0 0 chr13 55383062 55383181 -64361717 - AluJb SINE Alu -189 123 5 731 116 93 16 chr13 55384470 55384599 -64360299 + LTR1 LTR ERV1 1 139 -646 51 83 0 0 chr13 55384605 55384726 -64360172 + AT_rich Low_complexity Low_complexity 1 121 0 1853 262 60 49 chr13 55384908 55385273 -64359625 - L1ME1 LINE L1 -5 6161 5802 264 30 0 0 chr13 55385273 55385306 -64359592 + (TC)n Simple_repeat Simple_repeat 2 34 0 1853 262 60 49 chr13 55385306 55386671 -64358227 - L1ME1 LINE L1 -364 5802 4419 340 311 82 7 chr13 55386812 55386947 -64357951 - MIR SINE MIR 0 262 118 263 281 22 0 chr13 55387087 55387176 -64357722 - L1MC4 LINE L1 -1337 6705 6615 317 247 49 37 chr13 55387207 55387369 -64357529 + L1ME2 LINE L1 5101 5264 -882 1522 281 86 28 chr13 55387380 55387727 -64357171 + L1ME2 LINE L1 5354 5679 -485 1877 154 76 15 chr13 55387727 55388070 -64356828 - THE1B LTR MaLR 0 364 1 1522 281 86 28 chr13 55388070 55388479 -64356419 + L1ME2 LINE L1 5679 6154 -10 229 226 60 24 chr13 55389181 55389265 -64355633 + HAL1b LINE L1 973 1059 -289 26 30 0 0 chr13 55389509 55389542 -64355356 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr13 55389619 55389653 -64355245 + AT_rich Low_complexity Low_complexity 1 34 0 249 266 0 0 chr13 55389947 55390011 -64354887 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 788 196 21 0 chr13 55390786 55390929 -64353969 + MER61D LTR ERV1 338 483 -18 243 88 0 0 chr13 55391616 55391650 -64353248 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 276 379 91 16 chr13 55391749 55392002 -64352896 + L2 LINE L2 2996 3267 -5 5538 189 15 33 chr13 55392502 55393297 -64351601 - L1PB3 LINE L1 0 6154 5346 2235 104 0 28 chr13 55393297 55393614 -64351284 + AluSp SINE Alu 1 308 -5 5538 189 15 33 chr13 55393614 55394998 -64349900 - L1PB3 LINE L1 -808 5346 3990 330 98 0 0 chr13 55398125 55398176 -64346722 + (TG)n Simple_repeat Simple_repeat 1 51 0 315 286 143 25 chr13 55398885 55399004 -64345894 - MIR SINE MIR -119 143 11 182 276 179 58 chr13 55399146 55399302 -64345596 - L2 LINE L2 -1265 2049 1875 329 263 0 18 chr13 55400352 55400466 -64344432 + MER67C LTR ERV1 73 184 -526 1749 170 69 20 chr13 55400466 55400813 -64344085 + THE1B LTR MaLR 1 364 0 10893 114 10 2 chr13 55400814 55402380 -64342518 + THE1B-int LTR MaLR 2 1579 -1 1882 165 44 15 chr13 55402388 55402727 -64342171 + THE1B LTR MaLR 16 364 0 2500 197 49 8 chr13 55402730 55403237 -64341661 + MER67C LTR ERV1 183 710 0 411 348 80 5 chr13 55403429 55403616 -64341282 + LTR33A LTR ERVL 59 259 -264 36 40 0 0 chr13 55404013 55404063 -64340835 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr13 55404729 55404764 -64340134 + AT_rich Low_complexity Low_complexity 1 35 0 12471 163 18 108 chr13 55405598 55408857 -64336041 - L1P LINE L1 -3178 2968 3 2412 151 48 5 chr13 55409160 55409576 -64335322 - MER61C LTR ERV1 0 434 1 26 30 0 0 chr13 55409753 55409786 -64335112 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 55409918 55409955 -64334943 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr13 55410180 55410216 -64334682 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr13 55410409 55410453 -64334445 + AT_rich Low_complexity Low_complexity 1 44 0 276 292 31 31 chr13 55410460 55410556 -64334342 + Tigger5 DNA MER2_type 1 96 -2227 1182 180 15 0 chr13 55410572 55410778 -64334120 + Tigger5 DNA MER2_type 2114 2322 -1 2010 118 0 4 chr13 55411594 55411874 -64333024 - AluSq SINE Alu -32 281 3 185 284 81 27 chr13 55411874 55411948 -64332950 + L2 LINE L2 566 643 -2671 453 330 28 23 chr13 55412005 55412181 -64332717 + MIR SINE MIR 2 178 -84 353 283 59 27 chr13 55412586 55412773 -64332125 + L1MC/D LINE L1 5550 5742 -2066 1704 133 28 0 chr13 55412970 55413218 -64331680 - AluSq SINE Alu -15 298 44 319 341 94 7 chr13 55414130 55414268 -64330630 + L1MEd LINE L1 16 165 -5954 4188 157 91 42 chr13 55414487 55415340 -64329558 - MER4D LTR ERV1 -8 895 1 298 234 0 13 chr13 55415422 55415499 -64329399 + L1MEd LINE L1 679 754 -5365 624 224 45 0 chr13 55415724 55415880 -64329018 + MLT1-int LTR MaLR 1 163 -1208 692 210 4 6 chr13 55415982 55416229 -64328669 + MLT1A1 LTR MaLR 61 363 -2 219 333 39 10 chr13 55416231 55416333 -64328565 + MIR SINE MIR 152 256 -6 282 207 21 147 chr13 55417979 55418156 -64326742 - MIR3 SINE MIR -24 184 33 1597 234 27 0 chr13 55418227 55418564 -64326334 + MLT1A1 LTR MaLR 13 358 -7 365 143 0 0 chr13 55418758 55418814 -64326084 - MER3 DNA MER1_type 0 209 154 875 204 59 50 chr13 55418815 55419035 -64325863 - Tigger2 DNA MER2_type -1 2717 2496 1534 261 55 16 chr13 55419093 55419426 -64325472 - L1M4 LINE L1 -891 5255 4891 2092 165 5 19 chr13 55419426 55419795 -64325103 - THE1B LTR MaLR 0 364 1 1534 261 55 16 chr13 55419795 55420010 -64324888 - L1M4 LINE L1 -1255 4891 4686 715 246 115 35 chr13 55420018 55420122 -64324776 - L1M4 LINE L1 -3143 3003 2909 1942 170 3 0 chr13 55420122 55420433 -64324465 - AluSx SINE Alu 0 312 1 715 246 115 35 chr13 55420433 55420763 -64324135 - L1M4 LINE L1 -3237 2909 2534 491 265 160 8 chr13 55420850 55421118 -64323780 + MER5C DNA MER1_type 16 324 0 37 104 0 0 chr13 55422097 55422232 -64322666 + AT_rich Low_complexity Low_complexity 1 135 0 203 0 37 0 chr13 55422460 55422487 -64322411 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 1525 248 48 3 chr13 55422729 55423060 -64321838 - MLT1A1 LTR MaLR -6 359 14 210 37 0 0 chr13 55423115 55423142 -64321756 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 442 239 8 39 chr13 55423705 55423835 -64321063 - L1MB5 LINE L1 0 6174 6049 1217 255 25 3 chr13 55423859 55424220 -64320678 - L1M4 LINE L1 -1587 4559 4191 * 1496 201 46 110 chr13 55424218 55424467 -64320431 - L1MB5 LINE L1 -312 5862 5599 1544 201 7 3 chr13 55424467 55424755 -64320143 - AluJb SINE Alu -23 289 1 1496 201 46 110 chr13 55424755 55425192 -64319706 - L1MB5 LINE L1 -575 5599 5221 936 253 12 44 chr13 55425194 55425534 -64319364 - L1MB5 LINE L1 -1007 5139 4811 1031 87 12 25 chr13 55425639 55425800 -64319098 - AluY SINE Alu -152 159 1 908 264 12 72 chr13 55425804 55426137 -64318761 + MLT1A1-int LTR MaLR 1059 1371 0 599 187 12 90 chr13 55426146 55426312 -64318586 + MLT1A1 LTR MaLR 7 159 -467 2544 268 36 6 chr13 55426462 55427103 -64317795 + LTR52-int LTR ERVL 14 673 -2883 427 241 62 31 chr13 55427126 55427288 -64317610 + LTR52-int LTR ERVL 846 1012 -2544 823 185 10 6 chr13 55427420 55427582 -64317316 + MLT1A1 LTR MaLR 158 424 -43 1479 230 34 48 chr13 55427604 55428078 -64316820 - MLT1C LTR MaLR 0 467 1 2748 231 45 15 chr13 55428154 55428804 -64316094 + LTR52-int LTR ERVL 1415 2083 -3602 2889 247 77 50 chr13 55428940 55429971 -64314927 + LTR52-int LTR ERVL 2090 3148 -2537 21 36 0 0 chr13 55429971 55429999 -64314899 + AT_rich Low_complexity Low_complexity 1 28 0 316 184 85 0 chr13 55431195 55431336 -64313562 + (TA)n Simple_repeat Simple_repeat 2 154 0 2251 88 0 7 chr13 55431672 55431977 -64312921 + AluY SINE Alu 1 303 -8 24 0 0 0 chr13 55432651 55432675 -64312223 + AT_rich Low_complexity Low_complexity 1 24 0 183 114 0 0 chr13 55432754 55432789 -64312109 + (GA)n Simple_repeat Simple_repeat 2 36 0 28 61 0 0 chr13 55433151 55433200 -64311698 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr13 55433352 55433381 -64311517 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr13 55434179 55434213 -64310685 + AT_rich Low_complexity Low_complexity 1 34 0 2112 213 51 25 chr13 55434982 55435532 -64309366 - L1MB8 LINE L1 0 6178 5615 2130 266 97 16 chr13 55435535 55436301 -64308597 - L1MB8 LINE L1 -1992 4154 3268 306 0 0 0 chr13 55436301 55436335 -64308563 + (CA)n Simple_repeat Simple_repeat 2 35 0 2130 266 97 16 chr13 55436335 55436687 -64308211 - L1MB8 LINE L1 -2878 3268 2946 498 269 73 48 chr13 55436700 55437176 -64307722 - L1M4 LINE L1 -3735 3222 2761 22 0 0 0 chr13 55437597 55437619 -64307279 + AT_rich Low_complexity Low_complexity 1 22 0 1269 249 101 68 chr13 55437671 55438811 -64306087 - L1M4 LINE L1 -4571 2388 1223 275 305 19 38 chr13 55438997 55439102 -64305796 - L1M4 LINE L1 -5835 1020 918 637 348 54 19 chr13 55439448 55439764 -64305134 - L1M4 LINE L1 -6012 847 521 23 33 0 0 chr13 55440001 55440031 -64304867 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 55440095 55440123 -64304775 + AT_rich Low_complexity Low_complexity 1 28 0 341 215 0 0 chr13 55440159 55440224 -64304674 + MER69 DNA AcHobo 5 69 -2457 1370 197 56 3 chr13 55440505 55440789 -64304109 + AluJo SINE Alu 1 299 -13 180 0 0 0 chr13 55440809 55440829 -64304069 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 676 284 82 35 chr13 55441119 55441570 -64303328 + MER69 DNA AcHobo 1887 2358 -168 884 150 69 17 chr13 55441571 55441744 -64303154 - Tigger1 DNA MER2_type -1 2417 2236 243 160 32 0 chr13 55441745 55441839 -64303059 + (TA)n Simple_repeat Simple_repeat 1 97 0 419 296 99 31 chr13 55441942 55442237 -64302661 + L1ME2 LINE L1 5383 5698 -466 201 195 0 0 chr13 55442239 55442280 -64302618 + (TA)n Simple_repeat Simple_repeat 2 42 0 937 231 41 7 chr13 55442303 55442572 -64302326 + L1ME2 LINE L1 5699 5976 -188 1030 257 196 36 chr13 55442792 55443375 -64301523 + L1MC4 LINE L1 6418 7093 -949 1081 281 89 17 chr13 55443413 55443930 -64300968 + L1MC4 LINE L1 7213 7766 -276 257 280 72 48 chr13 55443935 55444142 -64300756 + L1MC4 LINE L1 7822 8033 -9 246 201 14 29 chr13 55446268 55446348 -64298550 + A-rich Low_complexity Low_complexity 2 137 0 22 0 0 0 chr13 55446354 55446376 -64298522 + AT_rich Low_complexity Low_complexity 1 22 0 185 278 19 19 chr13 55446376 55446430 -64298468 + L2 LINE L2 3209 3262 -10 23 54 0 0 chr13 55446447 55446484 -64298414 + AT_rich Low_complexity Low_complexity 1 37 0 252 0 0 0 chr13 55446517 55446545 -64298353 + (TG)n Simple_repeat Simple_repeat 1 28 0 248 259 104 108 chr13 55447413 55447664 -64297234 + MLT1J LTR MaLR 62 311 -200 22 35 0 0 chr13 55447702 55447731 -64297167 + AT_rich Low_complexity Low_complexity 1 29 0 243 321 0 0 chr13 55447840 55447921 -64296977 - MLT1J LTR MaLR -25 486 406 782 102 25 0 chr13 55448527 55448645 -64296253 + L1P3 LINE L1 5647 5767 -405 856 115 18 12 chr13 55448718 55448883 -64296015 + GA-rich Low_complexity Low_complexity 2 167 0 480 115 21 21 chr13 55448899 55448995 -64295903 + GA-rich Low_complexity Low_complexity 1 96 0 24 0 0 0 chr13 55449142 55449166 -64295732 + AT_rich Low_complexity Low_complexity 1 24 0 409 284 34 51 chr13 55449555 55449731 -64295167 + MLT1L LTR MaLR 19 191 -424 709 229 34 34 chr13 55450271 55450476 -64294422 - MER3 DNA MER1_type -4 205 1 696 207 46 23 chr13 55450511 55450685 -64294213 + MER58A DNA MER1_type 47 224 0 201 274 42 95 chr13 55451460 55451555 -64293343 + MIR SINE MIR 9 98 -164 1119 140 9 5 chr13 55452000 55452208 -64292690 - L1M2 LINE L1 -571 5720 5508 256 326 0 0 chr13 55452217 55452306 -64292592 + MIR SINE MIR 164 252 -10 3187 193 23 51 chr13 55452478 55453267 -64291631 - L1MA10 LINE L1 -2 6332 5566 332 284 32 0 chr13 55453273 55453368 -64291530 - MER52A LTR ERV1 -3 1752 1655 32387 152 37 31 chr13 55453369 55453589 -64291309 - MER52A-int LTR ERV1 -6 7085 6868 3131 102 25 0 chr13 55453589 55454031 -64290867 - MLT2A2 LTR ERVL 0 453 1 32387 152 37 31 chr13 55454031 55454548 -64290350 - MER52A-int LTR ERV1 -223 6868 6356 1974 150 20 0 chr13 55454548 55454848 -64290050 + AluSg SINE Alu 3 308 -2 32387 152 37 31 chr13 55454848 55456484 -64288414 - MER52A-int LTR ERV1 -735 6356 4732 2193 106 0 31 chr13 55456484 55456805 -64288093 - AluY SINE Alu 0 311 1 32387 152 37 31 chr13 55456805 55457367 -64287531 - MER52A-int LTR ERV1 -2359 4732 4175 2255 135 0 6 chr13 55457367 55457722 -64287176 + THE1A LTR MaLR 3 355 0 10634 113 30 0 chr13 55457722 55459256 -64285642 + THE1A-int LTR MaLR 1 1580 0 2212 136 14 17 chr13 55459256 55459610 -64285288 + THE1A LTR MaLR 1 353 -2 32387 152 37 31 chr13 55459610 55459855 -64285043 - MER52A-int LTR ERV1 -2916 4175 3933 1867 174 0 3 chr13 55459855 55460160 -64284738 - AluSx SINE Alu -3 309 6 32387 152 37 31 chr13 55460160 55462710 -64282188 - MER52A-int LTR ERV1 -3158 3933 1313 837 141 34 102 chr13 55462725 55462902 -64281996 - MER52A-int LTR ERV1 -5974 1117 953 * 6469 175 34 47 chr13 55462896 55463109 -64281789 - MER52A-int LTR ERV1 -5789 1302 1088 2331 153 3 0 chr13 55463109 55463481 -64281417 - THE1C LTR MaLR -2 373 1 6469 175 34 47 chr13 55463481 55464574 -64280324 - MER52A-int LTR ERV1 -6003 1088 30 635 282 54 76 chr13 55464579 55465394 -64279504 - MER52A LTR ERV1 0 1755 276 1263 301 62 23 chr13 55465914 55466635 -64278263 - HERVI LTR ERV1 -138 7647 3819 444 298 28 37 chr13 55466862 55467077 -64277821 - HERVI LTR ERV1 -1111 5538 5326 325 269 25 25 chr13 55467493 55467612 -64277286 - HERVI LTR ERV1 -1796 4853 4735 647 336 8 4 chr13 55467843 55468105 -64276793 - HERVI LTR ERV1 -2029 5756 5494 3515 123 48 26 chr13 55468105 55468684 -64276214 + LTR14B LTR ERVK 17 608 0 1711 323 41 45 chr13 55468714 55470066 -64274832 - HERVI LTR ERV1 -2316 5469 4124 2741 315 48 40 chr13 55470105 55472787 -64272111 - HERVI LTR ERV1 -3673 4112 1000 558 325 5 10 chr13 55472945 55473148 -64271750 - HERVI LTR ERV1 -6782 1003 802 331 278 69 14 chr13 55473493 55473637 -64271261 - HERVI LTR ERV1 -6282 367 216 713 261 6 9 chr13 55474317 55474471 -64270427 - MER52A LTR ERV1 -534 800 603 9980 252 73 34 chr13 55474472 55480222 -64264676 - L1M2 LINE L1 -745 5465 9 1139 204 26 0 chr13 55480351 55480577 -64264321 + L1MC5 LINE L1 5463 5694 -2091 326 309 83 29 chr13 55480579 55480783 -64264115 + L1ME LINE L1 5586 5800 -321 25 0 0 0 chr13 55480820 55480845 -64264053 + AT_rich Low_complexity Low_complexity 1 25 0 34 42 0 0 chr13 55481020 55481068 -64263830 + AT_rich Low_complexity Low_complexity 1 48 0 14807 115 19 4 chr13 55481581 55484648 -64260250 + L1PA8 LINE L1 3085 6172 0 34 72 0 0 chr13 55485332 55485401 -64259497 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr13 55485702 55485723 -64259175 + AT_rich Low_complexity Low_complexity 1 21 0 369 306 139 6 chr13 55486269 55486449 -64258449 + L1MC5 LINE L1 6639 6842 -1119 2882 269 23 20 chr13 55486458 55487491 -64257407 + L1M4 LINE L1 4103 5138 -1008 261 119 0 0 chr13 55487536 55487578 -64257320 + (CA)n Simple_repeat Simple_repeat 1 42 0 1485 139 16 0 chr13 55487606 55487857 -64257041 - HSMAR2 DNA Mariner -1 1301 1047 487 206 0 9 chr13 55487856 55487963 -64256935 + MSTB LTR MaLR 317 422 -4 * 1696 166 9 12 chr13 55487963 55488288 -64256610 - HSMAR2 DNA Mariner -878 424 101 573 274 0 14 chr13 55488283 55488429 -64256469 - MLT2B1 LTR ERVL -66 454 311 * 22 80 0 0 chr13 55488471 55488521 -64256377 + AT_rich Low_complexity Low_complexity 1 50 0 2380 266 105 25 chr13 55489155 55491544 -64253354 + L1MB2 LINE L1 803 3273 -3109 * 2980 209 52 12 chr13 55491543 55492335 -64252563 - L1PA16 LINE L1 -705 5460 4635 4278 153 10 3 chr13 55492335 55493059 -64251839 + L1PA16 LINE L1 5438 6166 0 1325 235 58 23 chr13 55493063 55493594 -64251304 + L1MB2 LINE L1 3268 3817 -2565 1629 237 67 78 chr13 55493610 55494162 -64250736 - MLT2B3 LTR ERVL -7 547 2 300 53 0 0 chr13 55494170 55494208 -64250690 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 246 239 0 0 chr13 55494219 55494265 -64250633 + L1MB2 LINE L1 3865 3910 -2472 306 318 204 7 chr13 55494267 55494575 -64250323 + L1PA12 LINE L1 1 369 -7212 625 193 35 14 chr13 55495345 55495455 -64249443 + L1PA12 LINE L1 2714 2829 -4745 1763 160 15 15 chr13 55495455 55495780 -64249118 + L1PA13 LINE L1 5832 6156 -7 625 193 35 14 chr13 55495780 55495814 -64249084 + L1PA12 LINE L1 2829 2861 -4713 * 4356 225 52 64 chr13 55495803 55497546 -64247352 + L1MB2 LINE L1 3918 5619 -788 2378 94 0 0 chr13 55497546 55497844 -64247054 + AluSq SINE Alu 1 298 -15 4356 225 52 64 chr13 55497844 55498509 -64246389 + L1MB2 LINE L1 5619 6291 -116 23 0 0 0 chr13 55498932 55498955 -64245943 + AT_rich Low_complexity Low_complexity 1 23 0 1652 65 0 0 chr13 55499109 55499309 -64245589 - AluY SINE Alu -13 298 99 334 228 50 50 chr13 55499643 55499744 -64245154 - MER94 DNA DNA -33 101 1 219 224 0 0 chr13 55499794 55499852 -64245046 + (TG)n Simple_repeat Simple_repeat 2 59 0 835 191 64 0 chr13 55499934 55500122 -64244776 + L1MA8 LINE L1 6075 6274 -17 3536 153 37 98 chr13 55500125 55500375 -64244523 + L1PB4 LINE L1 5347 5611 -545 529 95 0 0 chr13 55500375 55500449 -64244449 - MADE1 DNA Mariner 0 80 7 3536 153 37 98 chr13 55500449 55500980 -64243918 + L1PB4 LINE L1 5611 6149 -7 397 311 121 32 chr13 55502226 55502474 -64242424 + MLT1I LTR MaLR 2 271 -138 753 159 6 104 chr13 55502775 55502904 -64241994 + L1PA16 LINE L1 5994 6101 -65 1828 183 89 2 chr13 55502904 55503298 -64241600 + MSTA LTR MaLR 1 428 0 753 159 6 104 chr13 55503298 55503350 -64241548 + L1PA16 LINE L1 6101 6157 -9 281 335 37 43 chr13 55503393 55503554 -64241344 + L2 LINE L2 3152 3311 -2 2498 64 0 6 chr13 55504750 55505062 -64239836 + AluY SINE Alu 1 310 -1 445 314 101 49 chr13 55505200 55505487 -64239411 + L3 LINE CR1 562 863 -714 22 0 0 0 chr13 55505911 55505933 -64238965 + AT_rich Low_complexity Low_complexity 1 22 0 218 308 103 56 chr13 55505970 55506077 -64238821 - L2 LINE L2 -18 3295 3184 24 77 0 0 chr13 55506375 55506427 -64238471 + AT_rich Low_complexity Low_complexity 1 52 0 2020 224 121 40 chr13 55507050 55507676 -64237222 + L1MC3 LINE L1 6705 7381 -404 750 261 70 83 chr13 55507676 55508644 -64236254 + MER52A LTR ERV1 659 1755 0 1151 188 93 73 chr13 55508645 55508798 -64236100 + L1MC3 LINE L1 7380 7528 -257 2516 58 0 0 chr13 55508798 55509108 -64235790 + AluY SINE Alu 1 310 -1 1151 188 93 73 chr13 55509108 55509352 -64235546 + L1MC3 LINE L1 7528 7785 0 26 30 0 0 chr13 55510014 55510047 -64234851 + AT_rich Low_complexity Low_complexity 1 33 0 218 279 0 0 chr13 55510156 55510199 -64234699 - MIR SINE MIR -141 121 79 22 35 0 0 chr13 55510762 55510791 -64234107 + AT_rich Low_complexity Low_complexity 1 29 0 2341 138 55 26 chr13 55510791 55510945 -64233953 - L1MA3 LINE L1 0 6305 6157 299 25 25 0 chr13 55510945 55510985 -64233913 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1839 145 3 11 chr13 55510985 55511268 -64233630 - AluSx SINE Alu -28 284 4 2341 138 55 26 chr13 55511268 55511567 -64233331 - L1MA3 LINE L1 -147 6158 5838 23 0 0 0 chr13 55512978 55513001 -64231897 + AT_rich Low_complexity Low_complexity 1 23 0 213 94 0 0 chr13 55513267 55513299 -64231599 + (TA)n Simple_repeat Simple_repeat 1 32 0 2328 64 3 64 chr13 55513727 55514057 -64230841 - AluY SINE Alu 0 311 2 936 200 0 0 chr13 55514445 55514615 -64230283 - AluSg/x SINE Alu -6 306 137 2113 109 0 0 chr13 55514744 55515074 -64229824 + AluSx SINE Alu 1 330 0 23 33 0 0 chr13 55515074 55515104 -64229794 + AT_rich Low_complexity Low_complexity 1 30 0 223 269 11 11 chr13 55516645 55516738 -64228160 + (TA)n Simple_repeat Simple_repeat 1 93 0 309 284 154 35 chr13 55516817 55517155 -64227743 - L1M4 LINE L1 -2919 3227 2850 3803 214 66 15 chr13 55517288 55517721 -64227177 - L1 LINE L1 -1197 4949 4539 2324 87 0 3 chr13 55517721 55518031 -64226867 - AluY SINE Alu -2 309 1 3803 214 66 15 chr13 55518031 55518581 -64226317 - L1 LINE L1 -1607 4539 3916 4179 194 55 37 chr13 55518589 55518647 -64226251 + L1MA9 LINE L1 5256 5311 -1001 2091 92 4 7 chr13 55518647 55518956 -64225942 - AluY SINE Alu 0 308 1 4179 194 55 37 chr13 55518956 55519933 -64224965 + L1MA9 LINE L1 5311 6312 0 413 290 66 39 chr13 55520208 55520467 -64224431 - L1 LINE L1 -3734 2412 2147 655 225 0 0 chr13 55520880 55521022 -64223876 - L1MA3 LINE L1 0 6305 6164 4437 61 5 0 chr13 55521637 55522210 -64222688 - L1PA8 LINE L1 0 6172 5597 230 0 0 0 chr13 55522443 55522471 -64222427 + L1PA6 LINE L1 6118 6145 -9 23 0 0 0 chr13 55522785 55522808 -64222090 + AT_rich Low_complexity Low_complexity 1 23 0 427 134 61 0 chr13 55523462 55523544 -64221354 + L1PA13 LINE L1 6073 6159 -4 543 261 30 60 chr13 55523830 55524098 -64220800 + L1MA9 LINE L1 6015 6274 -38 21 57 0 0 chr13 55524360 55524395 -64220503 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 55524474 55524509 -64220389 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 55525129 55525157 -64219741 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 55526482 55526506 -64218392 + AT_rich Low_complexity Low_complexity 1 24 0 23 78 0 0 chr13 55526832 55526883 -64218015 + AT_rich Low_complexity Low_complexity 1 51 0 308 278 0 10 chr13 55527035 55527132 -64217766 - L1M4 LINE L1 -3727 2419 2324 30 45 0 0 chr13 55527297 55527341 -64217557 + AT_rich Low_complexity Low_complexity 1 44 0 27 92 0 0 chr13 55527407 55527483 -64217415 + AT_rich Low_complexity Low_complexity 1 76 0 1050 212 106 66 chr13 55527781 55528130 -64216768 + MLT1A1 LTR MaLR 1 363 -2 25 0 0 0 chr13 55528201 55528226 -64216672 + AT_rich Low_complexity Low_complexity 1 25 0 197 319 50 69 chr13 55528464 55528624 -64216274 - L3 LINE CR1 -10 1567 1411 26 0 0 0 chr13 55528806 55528832 -64216066 + AT_rich Low_complexity Low_complexity 1 26 0 5726 232 31 48 chr13 55531434 55532759 -64212139 + L1MC3 LINE L1 4568 5915 -231 1882 135 47 47 chr13 55532759 55533123 -64211775 - THE1B LTR MaLR 0 364 1 10010 128 29 4 chr13 55533123 55534664 -64210234 - THE1B-int LTR MaLR 0 1580 1 2149 123 47 33 chr13 55534664 55535023 -64209875 - THE1B LTR MaLR 0 364 1 5726 232 31 48 chr13 55535023 55535995 -64208903 + L1MC3 LINE L1 4415 5403 -743 3693 190 46 9 chr13 55536685 55537374 -64207524 + MER44D DNA MER2_type 9 595 -10 23 0 0 0 chr13 55537643 55537666 -64207232 + AT_rich Low_complexity Low_complexity 1 23 0 225 239 0 30 chr13 55537854 55537921 -64206977 + GA-rich Low_complexity Low_complexity 4 68 0 25 0 0 0 chr13 55538561 55538586 -64206312 + AT_rich Low_complexity Low_complexity 1 25 0 24 77 0 0 chr13 55539267 55539319 -64205579 + AT_rich Low_complexity Low_complexity 1 52 0 256 246 86 80 chr13 55539671 55539846 -64205052 - ORSL DNA AcHobo -1 274 99 549 44 0 0 chr13 55539857 55539925 -64204973 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1029 208 0 41 chr13 55539984 55540205 -64204693 - AluJo SINE Alu -100 212 1 313 171 0 73 chr13 55540207 55540289 -64204609 - ORSL DNA AcHobo -186 89 14 25 31 0 0 chr13 55540848 55540880 -64204018 + AT_rich Low_complexity Low_complexity 1 32 0 613 330 50 4 chr13 55540905 55541163 -64203735 - HERVL LTR ERVL -1514 4140 3871 615 133 0 0 chr13 55541369 55541467 -64203431 - L1PB4 LINE L1 -6 6150 6053 474 204 29 0 chr13 55541660 55541763 -64203135 - MER5A DNA MER1_type -77 112 7 257 279 148 25 chr13 55541798 55541920 -64202978 - HERVL LTR ERVL -2984 2780 2644 523 269 44 47 chr13 55542570 55542867 -64202031 + L1MDa LINE L1 1295 1590 -4950 22 35 0 0 chr13 55544841 55544870 -64200028 + AT_rich Low_complexity Low_complexity 1 29 0 776 223 100 120 chr13 55545415 55545904 -64198994 + LTR28 LTR ERV1 1 602 -418 1113 243 104 25 chr13 55545911 55546442 -64198456 + L1M4 LINE L1 3528 4100 -2046 343 277 47 43 chr13 55546476 55546711 -64198187 + L1M4 LINE L1 4178 4413 -1733 4132 187 39 23 chr13 55546750 55547633 -64197265 + L1ME1 LINE L1 20 916 -5468 508 162 20 0 chr13 55547635 55547734 -64197164 + L1ME1 LINE L1 1274 1374 -5010 1725 180 17 11 chr13 55547748 55548098 -64196800 - L1MC1 LINE L1 -255 6078 5727 3660 236 216 39 chr13 55548136 55548396 -64196502 - L1M1 LINE L1 -4485 2621 2408 1215 104 11 127 chr13 55548396 55548656 -64196242 + MER30 DNA MER1_type 1 230 0 3660 236 216 39 chr13 55548656 55549745 -64195153 - L1M1 LINE L1 -4698 2408 1513 2339 181 19 2 chr13 55549745 55550166 -64194732 - MSTA LTR MaLR 0 428 1 3660 236 216 39 chr13 55550166 55551315 -64193583 - L1M1 LINE L1 -5593 1513 1 26 74 0 0 chr13 55552400 55552454 -64192444 + AT_rich Low_complexity Low_complexity 1 54 0 598 235 0 37 chr13 55553845 55553981 -64190917 - FLAM_C SINE Alu -2 131 1 206 182 124 16 chr13 55554058 55554179 -64190719 + (CTAAT)n Simple_repeat Simple_repeat 4 137 0 576 306 17 0 chr13 55554591 55554771 -64190127 - L2 LINE L2 -526 2788 2606 2302 56 0 56 chr13 55554885 55555207 -64189691 + AluY SINE Alu 1 304 -7 1078 271 62 39 chr13 55555556 55556308 -64188590 + L1ME1 LINE L1 2961 3730 -2652 823 258 51 60 chr13 55556314 55556667 -64188231 + MLT1A1 LTR MaLR 16 365 0 763 254 70 0 chr13 55556675 55556919 -64187979 + L1ME1 LINE L1 3733 3993 -2389 346 93 74 0 chr13 55556947 55557055 -64187843 + (TA)n Simple_repeat Simple_repeat 1 116 0 38 0 0 0 chr13 55557101 55557139 -64187759 + AT_rich Low_complexity Low_complexity 1 38 0 819 266 142 40 chr13 55557147 55557662 -64187236 + L1ME1 LINE L1 4034 4637 -1745 2090 135 0 0 chr13 55557662 55557959 -64186939 - AluSx SINE Alu -15 297 1 819 266 142 40 chr13 55557959 55558124 -64186774 + L1ME1 LINE L1 4637 4784 -1598 279 0 0 0 chr13 55558124 55558155 -64186743 + (TG)n Simple_repeat Simple_repeat 2 32 0 906 265 78 30 chr13 55558187 55558723 -64186175 + L1ME1 LINE L1 4962 5523 -859 2443 304 44 25 chr13 55558750 55559444 -64185454 + L1MB7 LINE L1 -283 429 -6117 1832 160 4 0 chr13 55559444 55559746 -64185152 - AluSq SINE Alu 0 303 1 2443 304 44 25 chr13 55559746 55559807 -64185091 + L1MB7 LINE L1 429 487 -6059 1588 251 60 27 chr13 55559816 55560831 -64184067 + L1MB7 LINE L1 877 2084 -4741 232 246 0 0 chr13 55560892 55560949 -64183949 + L1MB7 LINE L1 4187 4243 -2401 2222 211 51 16 chr13 55560971 55561283 -64183615 + L1MB7 LINE L1 5428 5728 -954 910 250 104 24 chr13 55561283 55561619 -64183279 - MLT1A1 LTR MaLR 0 365 3 2222 211 51 16 chr13 55561619 55562187 -64182711 + L1MB7 LINE L1 5728 6336 -346 626 239 0 0 chr13 55562212 55562329 -64182569 + FRAM SINE Alu 35 151 -25 888 184 6 6 chr13 55562361 55562540 -64182358 + L1MB7 LINE L1 6503 6681 -1 2043 246 44 80 chr13 55562542 55563461 -64181437 + L1ME1 LINE L1 5521 6383 -19 2457 64 0 3 chr13 55563636 55563948 -64180950 + AluY SINE Alu 1 311 0 430 332 34 42 chr13 55566505 55566743 -64178155 + MLT1H LTR MaLR 43 278 -271 6003 112 10 1 chr13 55567236 55568361 -64176537 + L1PA13 LINE L1 5030 6163 0 26 30 0 0 chr13 55570575 55570608 -64174290 + AT_rich Low_complexity Low_complexity 1 33 0 674 238 21 0 chr13 55570611 55570795 -64174103 + AluJb SINE Alu 138 324 0 1827 152 76 0 chr13 55570796 55571099 -64173799 - LTR17 LTR ERV1 0 780 455 3337 64 0 7 chr13 55571100 55571551 -64173347 + LTR7 LTR ERV1 1 448 -2 19349 91 25 34 chr13 55571553 55574574 -64170324 + HERVH LTR ERV1 1 2995 -4718 6118 89 3 0 chr13 55574553 55575404 -64169494 + HERVH LTR ERV1 3140 3993 -3720 * 4281 148 1 1 chr13 55575406 55576068 -64168830 + HERVH LTR ERV1 4488 5149 -2564 1327 121 17 52 chr13 55576065 55576296 -64168602 + HERVH LTR ERV1 5597 5819 -1894 * 2390 97 45 13 chr13 55576294 55576674 -64168224 + HERVH LTR ERV1 7322 7713 0 3252 69 2 9 chr13 55576674 55577125 -64167773 + LTR7 LTR ERV1 1 448 -2 3084 117 2 11 chr13 55577127 55577589 -64167309 - LTR17 LTR ERV1 -322 458 1 900 138 6 11 chr13 55577853 55578027 -64166871 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 25 90 0 0 chr13 55578079 55578146 -64166752 + AT_rich Low_complexity Low_complexity 1 67 0 344 332 46 38 chr13 55578514 55578752 -64166146 + Charlie8 DNA MER1_type 7 246 -2171 21 36 0 0 chr13 55578880 55578908 -64165990 + AT_rich Low_complexity Low_complexity 1 28 0 523 189 18 0 chr13 55579035 55579146 -64165752 - L1MA8 LINE L1 -10 6281 6169 29 0 0 0 chr13 55579838 55579867 -64165031 + AT_rich Low_complexity Low_complexity 1 29 0 313 242 98 39 chr13 55579930 55580083 -64164815 + L1ME4a LINE L1 5707 5868 -253 376 343 183 27 chr13 55580122 55580766 -64164132 - L2 LINE L2 -5 3308 1528 24 67 0 0 chr13 55583680 55583725 -64161173 + AT_rich Low_complexity Low_complexity 1 45 0 217 217 14 14 chr13 55585809 55585878 -64159020 + (TATG)n Simple_repeat Simple_repeat 3 71 0 1569 205 3 3 chr13 55586066 55586363 -64158535 + AluJo SINE Alu 15 311 -1 2487 69 110 90 chr13 55589756 55589797 -64155101 - MLT2A1 LTR ERVL 0 444 405 1078 99 0 11 chr13 55589797 55589979 -64154919 + (TA)n Simple_repeat Simple_repeat 1 180 0 2487 69 110 90 chr13 55589979 55590372 -64154526 - MLT2A1 LTR ERVL -39 405 1 839 265 34 0 chr13 55590622 55590856 -64154042 - MER58 DNA MER1_type -90 251 10 1630 253 82 21 chr13 55590953 55591439 -64153459 - MLT1E2 LTR MaLR 0 626 111 947 264 158 64 chr13 55591783 55592302 -64152596 - MLT1G1 LTR MaLR -27 568 1 598 248 4 91 chr13 55593837 55594079 -64150819 + L2 LINE L2 3088 3308 -5 649 76 19 9 chr13 55594082 55594187 -64150711 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 356 164 31 23 chr13 55594290 55594418 -64150480 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 1820 158 14 0 chr13 55594505 55594797 -64150101 + AluSx SINE Alu 5 300 -12 22 35 0 0 chr13 55595850 55595879 -64149019 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 55596375 55596404 -64148494 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 55596824 55596856 -64148042 + AT_rich Low_complexity Low_complexity 1 32 0 36 62 0 0 chr13 55597108 55597172 -64147726 + AT_rich Low_complexity Low_complexity 1 64 0 835 146 0 15 chr13 55598401 55598538 -64146360 + AluSg/x SINE Alu 176 310 -2 24 0 0 0 chr13 55598914 55598938 -64145960 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 55601800 55601821 -64143077 + AT_rich Low_complexity Low_complexity 1 21 0 342 309 83 24 chr13 55601944 55602112 -64142786 - MIR SINE MIR -70 192 15 202 373 82 0 chr13 55602119 55602229 -64142669 + L2 LINE L2 3148 3266 -6 21 0 0 0 chr13 55603040 55603061 -64141837 + AT_rich Low_complexity Low_complexity 1 21 0 354 23 0 0 chr13 55604072 55604115 -64140783 + (CA)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr13 55604590 55604622 -64140276 + AT_rich Low_complexity Low_complexity 1 32 0 327 25 0 0 chr13 55604744 55604784 -64140114 + (TG)n Simple_repeat Simple_repeat 2 41 0 1388 236 73 47 chr13 55605882 55606374 -64138524 - MLT1D LTR MaLR 0 505 1 1756 153 177 11 chr13 55606893 55607260 -64137638 - MSTA LTR MaLR 0 428 1 26 74 0 0 chr13 55607395 55607449 -64137449 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr13 55609886 55609916 -64134982 + AT_rich Low_complexity Low_complexity 1 30 0 216 236 0 18 chr13 55610381 55610436 -64134462 + (TA)n Simple_repeat Simple_repeat 2 55 0 328 319 30 71 chr13 55610671 55610840 -64134058 + MIR SINE MIR 35 196 -66 234 0 0 0 chr13 55611535 55611561 -64133337 + (GA)n Simple_repeat Simple_repeat 2 27 0 248 294 102 59 chr13 55611577 55611951 -64132947 - Tigger8 DNA MER2_type -165 501 112 1016 269 101 27 chr13 55612812 55613177 -64131721 + MSTD LTR MaLR 1 392 -4 1211 120 0 0 chr13 55613501 55613668 -64131230 + AluSg/x SINE Alu 137 303 -9 239 330 27 36 chr13 55613720 55613832 -64131066 - L2 LINE L2 -334 2938 2828 940 137 68 0 chr13 55613968 55614129 -64130769 - Tigger5 DNA MER2_type 0 2323 2152 589 216 0 0 chr13 55614121 55614232 -64130666 - Tigger5 DNA MER2_type -2206 117 7 * 280 206 10 10 chr13 55614342 55614439 -64130459 + GA-rich Low_complexity Low_complexity 4 100 0 1099 203 90 69 chr13 55614620 55615009 -64129889 + MER39 LTR ERV1 311 707 0 343 172 11 11 chr13 55615022 55615109 -64129789 + GA-rich Low_complexity Low_complexity 3 89 0 26 50 0 0 chr13 55616012 55616052 -64128846 + AT_rich Low_complexity Low_complexity 1 40 0 26 64 0 0 chr13 55616077 55616124 -64128774 + AT_rich Low_complexity Low_complexity 1 47 0 1252 273 47 93 chr13 55616742 55617313 -64127585 + MER77 LTR ERV1 55 599 -6 1748 161 174 8 chr13 55617496 55617863 -64127035 + MSTA LTR MaLR 1 428 0 8367 184 26 12 chr13 55617863 55619490 -64125408 + MSTA-int LTR MaLR 1 1651 0 1701 161 151 6 chr13 55619490 55619814 -64125084 + MSTA LTR MaLR 1 371 -57 2215 103 0 3 chr13 55620004 55620306 -64124592 + AluSq SINE Alu 1 301 -12 2193 157 32 71 chr13 55620688 55621180 -64123718 - L1MA4A LINE L1 -3 6300 5828 315 132 176 22 chr13 55621187 55621278 -64123620 + L1MC4 LINE L1 6617 6721 -1321 246 265 102 31 chr13 55621203 55621301 -64123597 - L1MC4 LINE L1 -1323 6719 6615 * 1598 179 7 3 chr13 55621311 55621602 -64123296 - L1MA4A LINE L1 -523 5777 5486 195 373 0 0 chr13 55621908 55621983 -64122915 - MIR SINE MIR -82 126 52 24 0 0 0 chr13 55622996 55623020 -64121878 + AT_rich Low_complexity Low_complexity 1 24 0 478 159 20 17 chr13 55623340 55623361 -64121537 - L1M1 LINE L1 -811 5492 5473 890 164 0 11 chr13 55623361 55623538 -64121360 - L1MA5 LINE L1 -2 6298 6124 478 159 20 17 chr13 55623538 55623643 -64121255 - L1M1 LINE L1 -830 5473 5369 1186 117 0 0 chr13 55623643 55623805 -64121093 - AluSp SINE Alu -18 295 134 641 233 43 95 chr13 55624145 55624377 -64120521 + AluJo SINE Alu 93 312 0 33 25 0 0 chr13 55624456 55624496 -64120402 + AT_rich Low_complexity Low_complexity 1 40 0 281 264 47 23 chr13 55624549 55624678 -64120220 - HAL1 LINE L1 -56 2451 2320 22 0 0 0 chr13 55624786 55624808 -64120090 + AT_rich Low_complexity Low_complexity 1 22 0 252 208 23 27 chr13 55624913 55625004 -64119894 + HsTC2 DNA Tc2 1803 1896 -2 313 355 29 41 chr13 55625354 55625596 -64119302 - HAL1 LINE L1 -782 1725 1487 264 288 56 69 chr13 55625660 55625893 -64119005 - HAL1 LINE L1 -1047 1460 1231 21 0 0 0 chr13 55626344 55626365 -64118533 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr13 55627657 55627697 -64117201 + AT_rich Low_complexity Low_complexity 1 40 0 428 35 17 0 chr13 55628746 55628804 -64116094 + (TC)n Simple_repeat Simple_repeat 2 60 0 * 433 168 26 26 chr13 55628803 55628958 -64115940 + (TA)n Simple_repeat Simple_repeat 2 156 0 2050 200 54 7 chr13 55629060 55629465 -64115433 - MSTB LTR MaLR 0 426 3 7001 195 65 33 chr13 55629471 55631067 -64113831 - MSTB-int LTR MaLR -4 1647 1 1602 246 57 2 chr13 55631067 55631473 -64113425 - MSTA LTR MaLR 0 428 1 2575 52 0 0 chr13 55631641 55631951 -64112947 - AluY SINE Alu -1 310 1 357 316 75 32 chr13 55632012 55632199 -64112699 + MIR SINE MIR 50 244 -18 1020 263 49 42 chr13 55632377 55632803 -64112095 - MER110A LTR ERV1 0 468 40 3901 280 70 44 chr13 55633095 55634866 -64110032 - MER110-int LTR ERV1 -458 4189 2373 1102 193 89 55 chr13 55634980 55635306 -64109592 + MER2 DNA MER2_type 9 345 0 1146 311 68 54 chr13 55635325 55635737 -64109161 - MER110-int LTR ERV1 -2441 2206 1801 1728 155 58 22 chr13 55635737 55636099 -64108799 - THE1C LTR MaLR 0 375 1 1146 311 68 54 chr13 55636099 55636237 -64108661 - MER110-int LTR ERV1 -2846 1801 1666 2380 90 0 3 chr13 55636237 55636547 -64108351 - AluSx SINE Alu 0 312 4 1146 311 68 54 chr13 55636547 55636808 -64108090 - MER110-int LTR ERV1 -2981 1666 1383 481 370 46 27 chr13 55636900 55637338 -64107560 - MER110-int LTR ERV1 -3244 3557 3112 572 296 90 85 chr13 55637547 55638158 -64106740 - MER110-int LTR ERV1 -3868 779 166 2881 253 43 23 chr13 55638191 55639431 -64105467 - L1M4 LINE L1 -2029 4615 3351 491 308 0 0 chr13 55639431 55639561 -64105337 + Tigger3(Golem) DNA MER2_type 1 130 -2899 1304 183 33 0 chr13 55639621 55639861 -64105037 + Tigger3(Golem) DNA MER2_type 2791 3038 0 1562 257 131 30 chr13 55639891 55640858 -64104040 - L1M4 LINE L1 -3324 3320 2177 3472 56 2 2 chr13 55640858 55641306 -64103592 + LTR7 LTR ERV1 1 448 -2 1562 257 131 30 chr13 55641306 55641650 -64103248 - L1M4 LINE L1 -4467 2177 1869 561 231 75 8 chr13 55641764 55641898 -64103000 - FLAM_C SINE Alu 0 143 1 409 299 13 0 chr13 55641900 55642057 -64102841 - L1M4 LINE L1 -4877 1665 1507 4964 179 26 19 chr13 55642103 55643286 -64101612 - L1MA3 LINE L1 0 6305 5114 3143 57 27 11 chr13 55643287 55643728 -64101170 - LTR7 LTR ERV1 -2 448 1 2356 93 50 13 chr13 55643728 55644106 -64100792 - HERVH LTR ERV1 0 7713 7322 1380 109 20 0 chr13 55644104 55644305 -64100593 - HERVH LTR ERV1 -1894 5819 5615 * 4151 147 8 1 chr13 55644330 55644988 -64099910 - HERVH LTR ERV1 -2564 5149 4488 3359 105 4 4 chr13 55644990 55645484 -64099414 - HERVH LTR ERV1 -3720 3993 3500 * 20572 86 58 31 chr13 55645483 55648684 -64096214 - HERVH LTR ERV1 -4423 3290 1 3291 75 0 7 chr13 55648686 55649137 -64095761 - LTR7 LTR ERV1 -2 448 1 1573 196 14 14 chr13 55649137 55649495 -64095403 - L1MA3 LINE L1 -1027 5119 4762 665 279 54 17 chr13 55649464 55649815 -64095083 - L1M4 LINE L1 -5056 1486 1123 * 1066 211 68 51 chr13 55649823 55650203 -64094695 - MER67C LTR ERV1 -13 501 152 725 300 113 70 chr13 55650252 55650476 -64094422 - L1M4 LINE L1 -5671 871 658 2309 86 0 3 chr13 55650476 55650777 -64094121 + AluY SINE Alu 1 300 -11 725 300 113 70 chr13 55650777 55651375 -64093523 - L1M4 LINE L1 -5884 658 14 194 62 31 0 chr13 55652432 55652464 -64092434 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1276 200 85 11 chr13 55653091 55653361 -64091537 - AluJo SINE Alu -22 290 1 3346 206 15 11 chr13 55654990 55655733 -64089165 - L1MB4 LINE L1 -8 6172 5427 204 381 7 43 chr13 55656703 55656842 -64088056 + L2 LINE L2 3137 3270 -2 2150 163 8 5 chr13 55657822 55658196 -64086702 - THE1C LTR MaLR 0 375 1 351 150 0 0 chr13 55658584 55658644 -64086254 + (TA)n Simple_repeat Simple_repeat 1 60 0 292 192 40 61 chr13 55658743 55658842 -64086056 - L1MC4 LINE L1 -1339 6703 6607 527 349 65 9 chr13 55660510 55660742 -64084156 + MIR SINE MIR 17 261 -1 312 207 24 0 chr13 55661517 55661599 -64083299 - L1MA8 LINE L1 -15 6276 6193 23 0 0 0 chr13 55661789 55661812 -64083086 + AT_rich Low_complexity Low_complexity 1 23 0 259 114 0 0 chr13 55662830 55662874 -64082024 - L1PA16 LINE L1 -9 6157 6114 2602 160 38 62 chr13 55663114 55663713 -64081185 + L1MA7 LINE L1 5707 6291 0 311 64 0 21 chr13 55663776 55663823 -64081075 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 579 385 20 6 chr13 55664098 55664443 -64080455 - ERVL LTR ERVL -659 5105 4756 306 182 0 0 chr13 55665072 55665138 -64079760 + GA-rich Low_complexity Low_complexity 1 66 0 546 338 115 24 chr13 55665319 55665772 -64079126 - ERVL LTR ERVL -1287 4367 3874 27 73 0 0 chr13 55666106 55666161 -64078737 + AT_rich Low_complexity Low_complexity 1 55 0 388 342 113 30 chr13 55666411 55666747 -64078151 - ERVL LTR ERVL -2397 3257 2894 514 360 55 25 chr13 55667071 55667507 -64077391 - ERVL LTR ERVL -3112 2542 2094 308 315 37 0 chr13 55668841 55668949 -64075949 - L2 LINE L2 0 3313 3202 1782 150 41 20 chr13 55668949 55669242 -64075656 + THE1B LTR MaLR 1 299 -65 3627 113 0 4 chr13 55669242 55669748 -64075150 + THE1-int LTR MaLR 1056 1559 -21 307 324 37 0 chr13 55670661 55670769 -64074129 - L2 LINE L2 0 3313 3202 1669 164 41 20 chr13 55670769 55671062 -64073836 + THE1B LTR MaLR 1 299 -65 2160 172 5 15 chr13 55671062 55671469 -64073429 + THE1-int LTR MaLR 1056 1458 -122 1127 344 135 15 chr13 55671589 55672042 -64072856 - L2 LINE L2 -514 2800 2403 1657 229 23 21 chr13 55672042 55672474 -64072424 - Tigger2a DNA MER2_type -1 433 1 1127 344 135 15 chr13 55672474 55672770 -64072128 - L2 LINE L2 -911 2403 1961 1771 192 34 15 chr13 55672777 55673176 -64071722 + MLT2A2 LTR ERVL 1 345 -108 21 0 0 0 chr13 55673847 55673868 -64071030 + AT_rich Low_complexity Low_complexity 1 21 0 357 320 119 18 chr13 55673940 55674159 -64070739 - MIR SINE MIR -7 255 15 308 315 37 0 chr13 55676430 55676538 -64068360 - L2 LINE L2 0 3313 3202 1782 150 41 20 chr13 55676538 55676831 -64068067 + THE1B LTR MaLR 1 299 -65 3717 114 2 4 chr13 55676831 55677357 -64067541 + THE1B-int LTR MaLR 1056 1580 0 2086 160 36 14 chr13 55677357 55677713 -64067185 + THE1B LTR MaLR 1 364 0 460 258 67 11 chr13 55678708 55678886 -64066012 + L2 LINE L2 1773 1960 -1354 1971 183 35 29 chr13 55678886 55679431 -64065467 - MLT2A2 LTR ERVL -2 552 1 1515 347 114 16 chr13 55679438 55679734 -64065164 + L2 LINE L2 1961 2227 -1086 1881 204 23 21 chr13 55679734 55680166 -64064732 + Tigger2a DNA MER2_type 1 433 -1 1515 347 114 16 chr13 55680166 55681052 -64063846 + L2 LINE L2 2227 3269 -44 285 406 0 0 chr13 55681110 55681233 -64063665 + L2 LINE L2 3150 3272 0 21 0 0 0 chr13 55681332 55681353 -64063545 + AT_rich Low_complexity Low_complexity 1 21 0 240 253 48 0 chr13 55681416 55681499 -64063399 + L1MC4 LINE L1 6615 6701 -1341 558 230 18 0 chr13 55681662 55681775 -64063123 - FLAM_A SINE Alu -16 126 12 1949 143 3 3 chr13 55682483 55682776 -64062122 + AluSx SINE Alu 4 296 -16 21 0 0 0 chr13 55682874 55682895 -64062003 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 36 10 chr13 55685243 55685438 -64059460 + MLT1E LTR MaLR 41 240 -353 301 336 90 36 chr13 55685801 55686078 -64058820 + L2 LINE L2 3021 3312 -1 214 167 33 0 chr13 55686402 55686462 -64058436 + (TA)n Simple_repeat Simple_repeat 1 62 0 354 23 0 0 chr13 55687789 55687832 -64057066 + (TG)n Simple_repeat Simple_repeat 2 44 0 1295 184 19 99 chr13 55687863 55688228 -64056670 - MLT2C1 LTR ERVL -61 336 1 257 75 25 0 chr13 55688244 55688284 -64056614 + (TA)n Simple_repeat Simple_repeat 1 41 0 22 35 0 0 chr13 55688730 55688759 -64056139 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr13 55689875 55689922 -64054976 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr13 55689934 55689966 -64054932 + AT_rich Low_complexity Low_complexity 1 32 0 1544 151 125 20 chr13 55690087 55690392 -64054506 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr13 55690742 55690770 -64054128 + AT_rich Low_complexity Low_complexity 1 28 0 638 260 51 46 chr13 55691795 55691991 -64052907 + L2 LINE L2 2339 2535 -779 801 220 13 0 chr13 55691991 55692150 -64052748 + MER2 DNA MER2_type 1 161 -184 375 144 0 0 chr13 55692158 55692228 -64052670 + L1M2 LINE L1 5594 5663 -493 402 148 0 37 chr13 55692237 55692318 -64052580 + MER2 DNA MER2_type 188 265 -80 353 231 71 156 chr13 55693065 55693230 -64051668 - MER58B DNA MER1_type -2080 340 163 1958 138 0 25 chr13 55693230 55693550 -64051348 + AluSx SINE Alu 1 312 0 353 231 71 156 chr13 55693550 55693561 -64051337 - MER58B DNA MER1_type -2257 163 153 2039 132 0 0 chr13 55693561 55693890 -64051008 + AluSx SINE Alu 1 312 0 353 231 71 156 chr13 55693890 55693950 -64050948 - MER58B DNA MER1_type -2267 153 6 1861 312 31 18 chr13 55694063 55694743 -64050155 + L1MA6 LINE L1 399 1087 -6479 1382 231 22 70 chr13 55694925 55695097 -64049801 + L1MA6 LINE L1 2696 2875 -4691 1551 225 0 3 chr13 55695097 55695408 -64049490 + AluJb SINE Alu 1 310 -2 1382 231 22 70 chr13 55695408 55695799 -64049099 + L1MA6 LINE L1 2875 3406 -4160 812 153 0 24 chr13 55695792 55695943 -64048955 + L1PA16 LINE L1 5898 6148 -18 * 423 78 0 65 chr13 55695943 55696016 -64048882 + L1PA16 LINE L1 6095 6166 0 812 153 0 24 chr13 55696016 55696035 -64048863 + L1PA16 LINE L1 6148 6166 0 3102 237 15 39 chr13 55696046 55696353 -64048545 + L1MA6 LINE L1 3293 3606 -3959 676 118 18 0 chr13 55696353 55696463 -64048435 + L1MA1 LINE L1 6187 6298 -4 3102 237 15 39 chr13 55696463 55697319 -64047579 + L1MA6 LINE L1 3606 4434 -3131 1896 203 56 33 chr13 55697306 55697510 -64047388 + L1PB4 LINE L1 5697 5895 -261 * 1637 123 25 4 chr13 55697510 55697753 -64047145 + AluSx SINE Alu 54 301 -11 1896 203 56 33 chr13 55697753 55697997 -64046901 + L1PB4 LINE L1 5895 6155 -1 10312 196 17 21 chr13 55698000 55701045 -64043853 + L1MA6 LINE L1 4447 7479 -240 331 140 18 0 chr13 55701050 55701107 -64043791 + L1MB8 LINE L1 5932 5989 -189 912 148 28 22 chr13 55701579 55701761 -64043137 + L1MB8 LINE L1 5996 6178 0 1043 257 79 14 chr13 55703331 55703408 -64041490 + MLT1B LTR MaLR 1 72 -318 2089 125 3 3 chr13 55703408 55703711 -64041187 - AluSx SINE Alu -9 303 1 1043 257 79 14 chr13 55703711 55703724 -64041174 + MLT1B LTR MaLR 72 390 0 1079 236 87 4 chr13 55703724 55703999 -64040899 + MLT1B LTR MaLR 93 390 0 232 218 64 26 chr13 55703999 55704077 -64040821 - L1ME3A LINE L1 -13 6157 6077 2500 143 44 5 chr13 55704142 55704554 -64040344 - MSTA LTR MaLR 0 428 1 7802 190 30 23 chr13 55704554 55706193 -64038705 - MSTA-int LTR MaLR 0 1651 1 1148 128 18 82 chr13 55706193 55706261 -64038637 - MSTA LTR MaLR 0 428 357 2054 100 0 4 chr13 55706261 55706530 -64038368 + AluSc SINE Alu 37 304 -5 1148 128 18 82 chr13 55706530 55706680 -64038218 - MSTA LTR MaLR -71 357 224 701 111 0 0 chr13 55706689 55706788 -64038110 - MSTA LTR MaLR -329 99 1 1428 301 44 9 chr13 55706885 55707410 -64037488 - L1ME3A LINE L1 -258 5912 5370 23 33 0 0 chr13 55709408 55709438 -64035460 + AT_rich Low_complexity Low_complexity 1 30 0 401 196 127 82 chr13 55711262 55711420 -64033478 + MLT1J LTR MaLR 6 170 -341 560 319 62 36 chr13 55711979 55712315 -64032583 + MLT1J LTR MaLR 167 511 0 229 241 19 0 chr13 55712788 55712842 -64032056 + MLT1J1 LTR MaLR 84 138 -308 401 375 63 13 chr13 55713696 55713995 -64030903 + L1MEd LINE L1 350 663 -5456 928 253 52 57 chr13 55714005 55714373 -64030525 - MER74B LTR ERVL -68 554 189 2971 175 38 4 chr13 55715343 55715902 -64028996 + HSMAR2 DNA Mariner 718 1295 -7 1224 246 62 14 chr13 55715934 55716291 -64028607 - MLT1A2 LTR MaLR 0 374 1 623 209 0 0 chr13 55716426 55716560 -64028338 - L1PB3 LINE L1 -2285 3861 3728 * 6089 196 24 17 chr13 55716556 55718155 -64026743 + L1PB3 LINE L1 3891 5496 -658 1357 224 26 0 chr13 55718159 55718463 -64026435 + AluJb SINE Alu 7 317 0 3571 164 31 5 chr13 55718463 55719110 -64025788 + L1PB3 LINE L1 5487 6150 -4 313 348 32 32 chr13 55719378 55719533 -64025365 + MIR SINE MIR 5 159 -103 37 39 0 0 chr13 55719731 55719782 -64025116 + AT_rich Low_complexity Low_complexity 1 51 0 232 317 41 55 chr13 55720299 55720444 -64024454 - MIR SINE MIR -72 190 48 4349 178 40 11 chr13 55720590 55721432 -64023466 + L1PA8A LINE L1 1 867 -5008 * 23937 129 9 4 chr13 55721420 55725805 -64019093 + L1PA8A LINE L1 1742 6147 -299 618 250 8 48 chr13 55725822 55726090 -64018808 + pTR5 LTR ERV1 772 1028 -1410 4058 118 134 28 chr13 55726276 55727023 -64017875 + LTR12 LTR ERV1 1 826 0 890 70 84 3 chr13 55727023 55727145 -64017753 + LTR12 LTR ERV1 452 563 -151 2144 79 0 64 chr13 55727145 55727474 -64017424 + L1PA8 LINE L1 5863 6170 -2 890 70 84 3 chr13 55727474 55727490 -64017408 + LTR12 LTR ERV1 563 713 -1 337 429 16 4 chr13 55727580 55727834 -64017064 - MIR SINE MIR -2 260 4 1367 241 154 53 chr13 55727978 55728690 -64016208 + LTR1B LTR ERV1 1 983 -37 28 0 0 0 chr13 55728774 55728802 -64016096 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 78 6 chr13 55728897 55729063 -64015835 - MIR SINE MIR -72 190 13 362 231 41 0 chr13 55729410 55729557 -64015341 + (TA)n Simple_repeat Simple_repeat 2 154 0 28 61 0 0 chr13 55729676 55729725 -64015173 + AT_rich Low_complexity Low_complexity 1 49 0 261 57 0 0 chr13 55732085 55732120 -64012778 + (TA)n Simple_repeat Simple_repeat 1 35 0 27 49 0 0 chr13 55732723 55732764 -64012134 + AT_rich Low_complexity Low_complexity 1 41 0 180 304 13 38 chr13 55733849 55733928 -64010970 - MIR SINE MIR 0 262 186 2385 158 42 8 chr13 55733950 55734430 -64010468 - L1MA4 LINE L1 -5 6295 5800 2049 125 28 3 chr13 55734431 55734752 -64010146 - Tigger4(Zombi) DNA MER2_type -877 1854 1526 23 0 0 0 chr13 55734933 55734956 -64009942 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 55735155 55735178 -64009720 + AT_rich Low_complexity Low_complexity 1 23 0 401 315 117 0 chr13 55735696 55735858 -64009040 - MIR SINE MIR -30 232 52 998 130 33 15 chr13 55735860 55736192 -64008706 + MSTA LTR MaLR 1 428 0 301 211 14 14 chr13 55736336 55736407 -64008491 + MER94 DNA DNA 16 86 -48 201 279 148 41 chr13 55736966 55737088 -64007810 - L2 LINE L2 -1 3271 3137 248 308 0 0 chr13 55739749 55739827 -64005071 - MLT1H LTR MaLR -460 89 12 866 323 48 60 chr13 55740288 55740789 -64004109 - L2 LINE L2 -420 2894 2400 255 345 85 14 chr13 55741007 55741230 -64003668 - ERVL LTR ERVL -465 5299 5061 287 304 43 0 chr13 55741550 55741665 -64003233 - ERVL LTR ERVL -1006 4648 4529 393 329 67 36 chr13 55741804 55742029 -64002869 - ERVL LTR ERVL -1315 4339 4108 262 380 72 0 chr13 55742095 55742345 -64002553 - ERVL LTR ERVL -1657 3997 3730 376 355 20 4 chr13 55743052 55743259 -64001639 - ERVL LTR ERVL -2544 3149 2903 967 320 87 55 chr13 55743652 55744617 -64000281 - ERVL LTR ERVL -2985 2779 1742 327 350 70 46 chr13 55748402 55748790 -63996108 + L2 LINE L2 1964 2360 -954 25 20 0 59 chr13 55749830 55749881 -63995017 + AT_rich Low_complexity Low_complexity 1 48 0 382 331 63 63 chr13 55749973 55750335 -63994563 + L1ME LINE L1 1265 1626 -4758 277 233 48 0 chr13 55750596 55750699 -63994199 + L1ME LINE L1 2515 2622 -3760 183 153 0 51 chr13 55750706 55750765 -63994133 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 867 320 58 14 chr13 55750767 55751539 -63993359 + L1ME LINE L1 2753 3558 -2824 259 307 11 0 chr13 55751653 55751741 -63993157 + L1ME LINE L1 3713 3801 -2581 848 267 20 24 chr13 55751836 55752087 -63992811 + MLT2D LTR ERVL 1 250 -164 279 203 0 0 chr13 55752271 55752335 -63992563 + (CA)n Simple_repeat Simple_repeat 2 65 0 304 128 0 0 chr13 55752335 55752382 -63992516 + MLT2D LTR ERVL 350 396 -1 307 318 67 28 chr13 55752468 55752723 -63992175 + L1ME LINE L1 4107 4371 -2011 1507 279 77 2 chr13 55753280 55753682 -63991216 + MER70B LTR ERVL 4 435 -143 1503 155 18 7 chr13 55753983 55754267 -63990631 + L1MB1 LINE L1 5882 6168 0 320 302 54 20 chr13 55754386 55754535 -63990363 + L1MC4 LINE L1 7749 7902 -140 339 25 0 0 chr13 55754536 55754576 -63990322 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr13 55754621 55754644 -63990254 + AT_rich Low_complexity Low_complexity 1 23 0 183 357 14 0 chr13 55754660 55754730 -63990168 - L2 LINE L2 -560 2754 2684 1055 314 121 15 chr13 55754730 55755192 -63989706 + MER69 DNA AcHobo 2 512 -2014 396 179 0 0 chr13 55755330 55755414 -63989484 + MER69 DNA AcHobo 2347 2430 -96 294 279 121 19 chr13 55757899 55758164 -63986734 + L1ME LINE L1 4554 4845 -1537 487 276 60 15 chr13 55758185 55758384 -63986514 + L1ME LINE L1 5636 5843 -563 4475 70 12 6 chr13 55760485 55761507 -63983391 - MER11A LTR ERVK 0 1266 1 21 36 0 0 chr13 55761772 55761800 -63983098 + AT_rich Low_complexity Low_complexity 1 28 0 423 340 92 49 chr13 55762943 55763311 -63981587 + L1MEd LINE L1 4 387 -5732 2277 198 9 0 chr13 55763569 55764013 -63980885 + L1M1 LINE L1 470 917 -6648 586 292 5 10 chr13 55764029 55764224 -63980674 - L1P LINE L1 -1543 4603 4410 630 183 39 10 chr13 55764367 55764513 -63980385 + MSTA LTR MaLR 1 163 -294 414 0 0 0 chr13 55764513 55764559 -63980339 + (TA)n Simple_repeat Simple_repeat 2 47 0 6463 83 20 0 chr13 55764569 55765773 -63979125 - L1PA7 LINE L1 -30 6124 4893 1871 108 0 0 chr13 55765769 55766046 -63978852 + L1PA7 LINE L1 4591 4867 -1279 * 1325 191 29 0 chr13 55766047 55766293 -63978605 + MSTA LTR MaLR 159 411 -17 271 143 48 0 chr13 55766362 55766425 -63978473 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 22 0 0 0 chr13 55766469 55766491 -63978407 + AT_rich Low_complexity Low_complexity 1 22 0 1057 307 52 28 chr13 55767655 55768157 -63976741 - HERV16 LTR ERVL -2909 2087 1574 1429 351 57 32 chr13 55768512 55769538 -63975360 - HERV16 LTR ERVL -3894 1102 52 547 359 45 0 chr13 55769665 55769885 -63975013 - LTR16A LTR ERVL -113 337 108 821 271 54 24 chr13 55770537 55771005 -63973893 + MLT1F LTR MaLR 1 567 0 272 352 76 0 chr13 55771785 55771890 -63973008 + L2 LINE L2 3193 3305 -8 216 0 0 0 chr13 55771895 55771919 -63972979 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 737 282 0 0 chr13 55772279 55772467 -63972431 - AluSg/x SINE Alu -19 293 106 308 200 27 33 chr13 55772690 55772840 -63972058 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 242 209 20 40 chr13 55772864 55773012 -63971886 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 22 99 0 0 chr13 55773032 55773103 -63971795 + AT_rich Low_complexity Low_complexity 1 71 0 1866 105 0 0 chr13 55773493 55773741 -63971157 + AluY SINE Alu 55 302 -9 412 289 52 69 chr13 55773747 55774225 -63970673 + L1ME LINE L1 4610 5079 -1067 8202 217 36 18 chr13 55774386 55774775 -63970123 + L1PA16 LINE L1 2855 3235 -2931 240 35 0 0 chr13 55774775 55774804 -63970094 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8202 217 36 18 chr13 55774804 55777563 -63967335 + L1PA16 LINE L1 3235 6058 -108 418 68 0 68 chr13 55777566 55777639 -63967259 + L1PA16 LINE L1 6097 6164 -2 515 260 37 94 chr13 55777673 55778054 -63966844 - L1MCa LINE L1 -5008 1418 1060 2528 150 50 2 chr13 55778634 55779053 -63965845 - Tigger2 DNA MER2_type 0 2718 2280 351 194 30 0 chr13 55779051 55779118 -63965780 - Tigger2 DNA MER2_type -2649 69 1 * 344 254 124 0 chr13 55779314 55779507 -63965391 + L1M4 LINE L1 3791 4007 -2139 26 50 0 0 chr13 55779532 55779572 -63965326 + AT_rich Low_complexity Low_complexity 1 40 0 809 292 106 22 chr13 55779676 55780166 -63964732 + L1ME LINE L1 5259 5789 -381 320 311 28 11 chr13 55780193 55780370 -63964528 + L1ME3A LINE L1 5675 5854 -316 2113 139 0 0 chr13 55781268 55781571 -63963327 + AluSx SINE Alu 1 303 -9 1382 192 54 61 chr13 55784566 55784957 -63959941 - MLT1B LTR MaLR 0 390 3 530 207 81 19 chr13 55785073 55785090 -63959808 + L1M4 LINE L1 4040 4055 -2091 183 42 0 0 chr13 55785090 55785114 -63959784 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 530 207 81 19 chr13 55785114 55785267 -63959631 + L1M4 LINE L1 4055 4224 -1922 672 196 8 15 chr13 55785327 55785460 -63959438 + MLT1A1 LTR MaLR 1 132 -233 326 301 68 24 chr13 55785464 55785670 -63959228 + L1M4 LINE L1 3949 4163 -1983 634 31 62 21 chr13 55786258 55786354 -63958544 + L1PA13 LINE L1 6058 6157 -6 574 221 159 34 chr13 55786707 55787068 -63957830 - MER61D LTR ERV1 -10 969 202 * 757 292 6 6 chr13 55787044 55787222 -63957676 - LTR28 LTR ERV1 -842 178 1 278 285 53 46 chr13 55787554 55787705 -63957193 + L2 LINE L2 3098 3249 -64 21 0 0 0 chr13 55788841 55788862 -63956036 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 55789359 55789387 -63955511 + AT_rich Low_complexity Low_complexity 1 28 0 1398 146 0 19 chr13 55790160 55790372 -63954526 - AluSx SINE Alu -103 209 2 15859 191 50 11 chr13 55790374 55796769 -63948129 - L1M1 LINE L1 -694 7027 380 2321 238 11 2 chr13 55796771 55797229 -63947669 - L1M1 LINE L1 -5732 1833 1372 * 2471 215 30 39 chr13 55797228 55797990 -63946908 - L1 LINE L1 -2598 3548 2794 1275 287 10 0 chr13 55797995 55798382 -63946516 + L1P LINE L1 2423 2813 -3333 591 283 113 35 chr13 55798389 55798580 -63946318 + L1ME3 LINE L1 5477 5652 -510 342 0 0 0 chr13 55798580 55798618 -63946280 + (TA)n Simple_repeat Simple_repeat 2 39 0 591 283 113 35 chr13 55798618 55798772 -63946126 + L1ME3 LINE L1 5652 5849 -313 367 270 86 11 chr13 55799494 55799668 -63945230 + L1MEc LINE L1 2187 2373 -4023 211 245 75 32 chr13 55800579 55800673 -63944225 + MIR SINE MIR 117 214 -48 24 0 0 0 chr13 55800974 55800998 -63943900 + AT_rich Low_complexity Low_complexity 1 24 0 1677 124 37 33 chr13 55801893 55802166 -63942732 - AluSx SINE Alu -17 295 22 211 205 0 80 chr13 55802797 55802909 -63941989 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 306 254 0 15 chr13 55803526 55803593 -63941305 + LTR67 LTR ERVL 65 130 -427 9848 166 49 10 chr13 55804342 55804845 -63940053 + Tigger1 DNA MER2_type 1 483 -1935 1924 135 96 6 chr13 55804845 55805179 -63939719 + THE1B LTR MaLR 1 364 0 9848 166 49 10 chr13 55805179 55807022 -63937876 + Tigger1 DNA MER2_type 483 2418 0 241 301 98 28 chr13 55807059 55807202 -63937696 + L3 LINE CR1 1349 1501 -76 825 206 69 0 chr13 55808866 55809041 -63935857 + L1PB4 LINE L1 5970 6156 0 280 216 100 0 chr13 55809593 55809687 -63935211 + L1M4 LINE L1 5680 5790 -394 28 48 0 0 chr13 55809846 55809888 -63935010 + AT_rich Low_complexity Low_complexity 1 42 0 375 257 24 38 chr13 55810479 55810689 -63934209 - L1MCa LINE L1 -4492 2449 2243 2417 72 0 3 chr13 55810691 55810996 -63933902 + AluY SINE Alu 1 304 -7 641 283 80 47 chr13 55811271 55811457 -63933441 - L1MCa LINE L1 -4924 1915 1737 2202 108 7 3 chr13 55811457 55811764 -63933134 - AluSx SINE Alu -4 308 1 641 283 80 47 chr13 55811764 55812535 -63932363 - L1MCa LINE L1 -5102 1737 830 587 297 123 18 chr13 55812762 55813153 -63931745 - L1MCa LINE L1 -5968 455 24 354 295 76 62 chr13 55813559 55813783 -63931115 - L1MEd LINE L1 -5046 1073 847 1056 285 24 17 chr13 55813885 55814345 -63930553 + L1MC1 LINE L1 4335 4797 -1349 960 118 0 7 chr13 55814345 55814481 -63930417 + AluSq/x SINE Alu 1 135 -178 1461 135 0 0 chr13 55814481 55814703 -63930195 + AluSg/x SINE Alu 85 306 -4 4983 209 26 23 chr13 55814705 55816246 -63928652 + L1MC1 LINE L1 4786 6328 -5 32 43 0 0 chr13 55816751 55816797 -63928101 + AT_rich Low_complexity Low_complexity 1 46 0 44 46 0 0 chr13 55816916 55816981 -63927917 + AT_rich Low_complexity Low_complexity 1 65 0 1575 291 80 22 chr13 55817242 55817829 -63927069 - MLT1E2 LTR MaLR 0 626 6 226 231 60 51 chr13 55817831 55817948 -63926950 - L1MEd LINE L1 -4937 1182 1065 212 329 58 36 chr13 55818887 55819024 -63925874 + MIR3 SINE MIR 65 204 -4 230 194 43 11 chr13 55819213 55819306 -63925592 + (TA)n Simple_repeat Simple_repeat 1 96 0 1956 140 7 0 chr13 55819647 55819940 -63924958 + AluSg SINE Alu 3 297 -13 2128 129 15 9 chr13 55820200 55820541 -63924357 + LTR3b LTR ERVK 158 500 0 1416 136 0 5 chr13 55820891 55820919 -63923979 + MER41C-int LTR ERV1 7545 7756 0 1437 87 0 0 chr13 55820919 55821104 -63923794 + HERVK14 LTR ERVK 5575 5759 -186 394 145 0 16 chr13 55821104 55821166 -63923732 + MER41C LTR ERV1 1 61 -493 515 48 0 0 chr13 55821166 55821229 -63923669 + HERVK14 LTR ERVK 5822 5884 -61 1971 133 33 15 chr13 55821252 55821584 -63923314 + LTR3b LTR ERVK 159 496 -4 304 98 0 0 chr13 55821585 55821626 -63923272 + LTR3b LTR ERVK 460 500 0 514 204 0 19 chr13 55821661 55821764 -63923134 - MER8 DNA MER2_type 0 239 139 1105 166 112 4 chr13 55821765 55822024 -63922874 - L1P LINE L1 -783 5363 5077 543 287 0 8 chr13 55822024 55822146 -63922752 - MER8 DNA MER2_type -118 121 1 28 29 0 0 chr13 55822192 55822227 -63922671 + AT_rich Low_complexity Low_complexity 1 35 0 2006 135 13 0 chr13 55822923 55823226 -63921672 - AluSp SINE Alu -2 311 5 1807 113 35 18 chr13 55823227 55823509 -63921389 - AluSq SINE Alu -2 311 25 626 202 99 45 chr13 55824114 55824357 -63920541 - LTR37B LTR ERV1 0 468 213 2176 115 3 0 chr13 55824623 55824927 -63919971 + AluSg1 SINE Alu 1 305 -4 205 262 0 0 chr13 55825693 55825735 -63919163 + MIR SINE MIR 28 69 -193 24 53 0 0 chr13 55825921 55825959 -63918939 + AT_rich Low_complexity Low_complexity 1 38 0 1710 142 15 0 chr13 55826008 55826282 -63918616 + AluSx SINE Alu 1 278 -34 705 56 0 0 chr13 55826289 55826379 -63918519 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 205 212 136 0 chr13 55827578 55827644 -63917254 + MIR SINE MIR 156 230 -32 209 299 11 23 chr13 55828309 55828396 -63916502 + CT-rich Low_complexity Low_complexity 2 87 0 21 0 0 0 chr13 55829312 55829333 -63915565 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 55829383 55829406 -63915492 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr13 55829705 55829734 -63915164 + AT_rich Low_complexity Low_complexity 1 29 0 709 343 69 28 chr13 55831135 55832028 -63912870 - HERVL LTR ERVL -802 4714 3738 274 298 88 33 chr13 55832196 55832411 -63912487 + LTR50 LTR ERVL 458 684 -111 21 0 0 0 chr13 55833229 55833250 -63911648 + AT_rich Low_complexity Low_complexity 1 21 0 1023 179 10 10 chr13 55833286 55833481 -63911417 - L1PA15 LINE L1 -6 6810 6616 14706 232 15 19 chr13 55833486 55838324 -63906574 - L1PA15 LINE L1 -532 6285 1468 268 246 0 15 chr13 55838362 55838427 -63906471 - L1PA15 LINE L1 -5325 1462 1399 1985 143 3 0 chr13 55839027 55839321 -63905577 + AluSx SINE Alu 1 295 -17 30 0 0 0 chr13 55839548 55839578 -63905320 + AT_rich Low_complexity Low_complexity 1 30 0 239 231 10 67 chr13 55840553 55840657 -63904241 + L1M4 LINE L1 2935 3032 -3114 588 285 78 0 chr13 55840715 55840957 -63903941 + L1M4 LINE L1 3343 3603 -2543 324 148 0 0 chr13 55841445 55841499 -63903399 - Alu SINE Alu 0 302 249 1873 156 10 3 chr13 55841789 55842091 -63902807 - AluSx SINE Alu -8 304 1 227 217 250 0 chr13 55842804 55842896 -63902002 + MIR SINE MIR 146 260 -2 35 41 0 0 chr13 55844800 55844849 -63900049 + AT_rich Low_complexity Low_complexity 1 49 0 4555 151 64 1 chr13 55845049 55845830 -63899068 - L1PA16 LINE L1 -9 6157 5328 4546 143 45 16 chr13 55845898 55846725 -63898173 + Tigger1 DNA MER2_type 1566 2416 -2 333 0 0 0 chr13 55846727 55846764 -63898134 + (TG)n Simple_repeat Simple_repeat 2 38 0 41 36 0 0 chr13 55846903 55846958 -63897940 + AT_rich Low_complexity Low_complexity 1 55 0 24 67 0 0 chr13 55847880 55847925 -63896973 + AT_rich Low_complexity Low_complexity 1 45 0 282 29 0 0 chr13 55848093 55848128 -63896770 + (TAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 55848526 55848547 -63896351 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 55849105 55849132 -63895766 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 55849232 55849263 -63895635 + AT_rich Low_complexity Low_complexity 1 31 0 2141 168 27 7 chr13 55849561 55850132 -63894766 - L1M1 LINE L1 -687 5618 5035 27 0 0 0 chr13 55850209 55850236 -63894662 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 55850597 55850618 -63894280 + AT_rich Low_complexity Low_complexity 1 21 0 2304 61 7 3 chr13 55850661 55850954 -63893944 + AluY SINE Alu 1 294 -17 24 32 0 0 chr13 55852076 55852107 -63892791 + AT_rich Low_complexity Low_complexity 1 31 0 365 306 106 17 chr13 55852110 55852290 -63892608 - MIR SINE MIR -2 260 65 23 68 0 0 chr13 55852322 55852366 -63892532 + AT_rich Low_complexity Low_complexity 1 44 0 1410 209 207 51 chr13 55852745 55853338 -63891560 - MER76 LTR ERV 0 688 3 407 218 90 64 chr13 55853356 55853544 -63891354 - MIR SINE MIR 0 262 70 21 36 0 0 chr13 55853613 55853641 -63891257 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 55853776 55853803 -63891095 + AT_rich Low_complexity Low_complexity 1 27 0 302 302 39 8 chr13 55853830 55853959 -63890939 + MER110 LTR ERV1 308 440 -51 24 32 0 0 chr13 55855246 55855277 -63889621 + AT_rich Low_complexity Low_complexity 1 31 0 1651 153 68 20 chr13 55855319 55855613 -63889285 + AluSx SINE Alu 3 310 -2 2179 108 0 7 chr13 55856108 55856415 -63888483 - AluSx SINE Alu -7 305 1 22 0 0 0 chr13 55857387 55857409 -63887489 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 55857751 55857775 -63887123 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 55862042 55862066 -63882832 + AT_rich Low_complexity Low_complexity 1 24 0 343 337 58 25 chr13 55862233 55862509 -63882389 + MLT1I LTR MaLR 63 347 -62 29 47 0 0 chr13 55862655 55862698 -63882200 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 55863166 55863189 -63881709 + AT_rich Low_complexity Low_complexity 1 23 0 214 321 25 12 chr13 55864673 55864754 -63880144 - MIR SINE MIR -6 256 175 1388 236 44 93 chr13 55866380 55866972 -63877926 + MLT1F1 LTR MaLR 5 567 0 25 31 0 0 chr13 55867463 55867495 -63877403 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr13 55868569 55868594 -63876304 + AT_rich Low_complexity Low_complexity 1 25 0 609 319 89 35 chr13 55868693 55869185 -63875713 - HAL1 LINE L1 -176 2331 1813 850 243 76 62 chr13 55869383 55869831 -63875067 + MLT1C LTR MaLR 5 458 -9 762 339 96 50 chr13 55869845 55870362 -63874536 - HAL1 LINE L1 -914 1593 1101 3725 78 19 13 chr13 55870362 55870889 -63874009 - L1PA13 LINE L1 -8 6155 5626 762 339 96 50 chr13 55870889 55871388 -63873510 - HAL1 LINE L1 -1406 1101 530 27 29 0 0 chr13 55871869 55871903 -63872995 + AT_rich Low_complexity Low_complexity 1 34 0 484 295 57 22 chr13 55872033 55872260 -63872638 - L1MB8 LINE L1 -3 6175 5941 2087 98 3 0 chr13 55872262 55872558 -63872340 + L1PA13 LINE L1 5863 6159 -4 333 314 25 25 chr13 55873470 55873591 -63871307 + L3 LINE CR1 597 717 -860 213 303 92 34 chr13 55874262 55874381 -63870517 + MIR SINE MIR 127 252 -10 1524 305 211 39 chr13 55874559 55876516 -63868382 - L2 LINE L2 -13 3300 994 218 400 0 15 chr13 55876872 55877002 -63867896 - L2 LINE L2 -2997 317 190 27 0 0 0 chr13 55877023 55877050 -63867848 + AT_rich Low_complexity Low_complexity 1 27 0 1122 335 10 5 chr13 55877065 55877462 -63867436 - LTR16A LTR ERVL 0 450 52 26 0 0 0 chr13 55877873 55877899 -63866999 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 55879196 55879218 -63865680 + AT_rich Low_complexity Low_complexity 1 22 0 233 397 71 7 chr13 55879235 55879376 -63865522 + L2 LINE L2 3101 3250 -22 369 0 0 0 chr13 55879473 55879514 -63865384 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr13 55881301 55881322 -63863576 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 55881943 55881967 -63862931 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 55882912 55882946 -63861952 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chr13 55883548 55883593 -63861305 + AT_rich Low_complexity Low_complexity 1 45 0 206 174 22 0 chr13 55883733 55883779 -63861119 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1015 290 69 36 chr13 55883795 55884261 -63860637 + L1MC3 LINE L1 94 574 -5471 240 246 42 34 chr13 55884249 55884367 -63860531 + L1MC3 LINE L1 2486 2604 -3960 * 4410 276 66 41 chr13 55884385 55885490 -63859408 + L1MC3 LINE L1 2650 3726 -2838 692 199 0 8 chr13 55885490 55885621 -63859277 - FLAM_C SINE Alu -2 131 2 4410 276 66 41 chr13 55885621 55887032 -63857866 + L1MC3 LINE L1 3726 5229 -1335 6942 216 18 6 chr13 55887035 55889743 -63855155 + L1PA16 LINE L1 1 5520 -1329 1474 144 16 23 chr13 55889743 55890000 -63854898 - THE1C LTR MaLR 0 375 121 1255 112 51 10 chr13 55889988 55890185 -63854713 - THE1C LTR MaLR -170 205 1 * 8797 146 60 28 chr13 55890185 55891715 -63853183 - THE1C-int LTR MaLR 0 1580 2 904 151 27 43 chr13 55891716 55891901 -63852997 - THE1C LTR MaLR 0 375 194 1855 149 55 32 chr13 55891905 55892251 -63852647 + THE1B LTR MaLR 1 457 0 945 188 10 56 chr13 55892257 55892454 -63852444 - THE1C LTR MaLR -187 188 1 4191 210 43 8 chr13 55892456 55893752 -63851146 + L1PA16 LINE L1 5518 6860 -9 1360 236 36 55 chr13 55893780 55894738 -63850160 + L1MC3 LINE L1 5220 8186 -17 359 275 44 150 chr13 55894923 55895074 -63849824 + MIR SINE MIR 18 129 -133 1960 145 3 0 chr13 55895074 55895370 -63849528 + AluSp SINE Alu 1 297 -16 359 275 44 150 chr13 55895370 55895491 -63849407 + MIR SINE MIR 129 261 -1 2320 99 3 0 chr13 55897176 55897480 -63847418 + AluSx SINE Alu 1 305 -7 254 176 54 14 chr13 55897528 55897602 -63847296 - MLT1L LTR MaLR -37 578 502 2273 110 0 0 chr13 55898023 55898322 -63846576 - AluSx SINE Alu -13 299 1 1247 295 14 19 chr13 55898347 55898717 -63846181 + MLT1E3 LTR MaLR 257 624 0 253 226 0 0 chr13 55898937 55898999 -63845899 + T-rich Low_complexity Low_complexity 1 62 0 1541 194 3 7 chr13 55899002 55899313 -63845585 + AluJo SINE Alu 1 310 0 29 0 0 0 chr13 55899430 55899459 -63845439 + AT_rich Low_complexity Low_complexity 1 29 0 266 326 37 22 chr13 55901032 55901167 -63843731 + MLT1I LTR MaLR 70 206 -203 243 135 0 0 chr13 55901369 55901406 -63843492 + MLT1I LTR MaLR 371 407 -2 229 286 41 41 chr13 55901786 55901884 -63843014 - L2 LINE L2 0 3313 3216 201 321 155 4 chr13 55902844 55902967 -63841931 + MIR SINE MIR 20 157 -63 2026 147 0 0 chr13 55903332 55903625 -63841273 + AluSx SINE Alu 1 293 -19 216 0 0 0 chr13 55903985 55904009 -63840889 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 272 352 76 0 chr13 55904014 55904119 -63840779 - L2 LINE L2 -8 3305 3193 821 304 68 9 chr13 55904899 55905367 -63839531 - MLT1F LTR MaLR 0 567 1 547 359 45 0 chr13 55906019 55906239 -63838659 + LTR16A LTR ERVL 108 337 -113 1429 351 57 32 chr13 55906366 55907392 -63837506 + HERV16 LTR ERVL 52 1102 -3894 1057 307 52 28 chr13 55907747 55908249 -63836649 + HERV16 LTR ERVL 1574 2087 -2909 22 0 0 0 chr13 55909413 55909435 -63835463 + AT_rich Low_complexity Low_complexity 1 22 0 271 143 48 0 chr13 55909479 55909542 -63835356 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 1325 191 29 0 chr13 55909611 55909857 -63835041 - MSTA LTR MaLR -17 411 159 1871 108 0 0 chr13 55909858 55910135 -63834763 - L1PA7 LINE L1 -1279 4867 4591 * 6514 81 20 0 chr13 55910131 55911335 -63833563 + L1PA7 LINE L1 4893 6124 -30 414 0 0 0 chr13 55911345 55911391 -63833507 + (TA)n Simple_repeat Simple_repeat 2 47 0 769 139 34 19 chr13 55911391 55911537 -63833361 - MSTA LTR MaLR -294 134 1 5517 119 7 29 chr13 55911680 55913468 -63831430 + L1PA15 LINE L1 4410 6164 -1 23 0 0 0 chr13 55913942 55913965 -63830933 + AT_rich Low_complexity Low_complexity 1 23 0 276 379 33 8 chr13 55914308 55914548 -63830350 + L2 LINE L2 2184 2429 -885 210 305 0 67 chr13 55914923 55915028 -63829870 - L2 LINE L2 -9 3304 3207 819 150 8 0 chr13 55915182 55915302 -63829596 - FLAM_C SINE Alu -19 124 4 2200 107 0 0 chr13 55915588 55915888 -63829010 + AluSc SINE Alu 1 300 -9 59 15 0 0 chr13 55916308 55916374 -63828524 + AT_rich Low_complexity Low_complexity 1 66 0 571 278 23 0 chr13 55916555 55916688 -63828210 + LTR16A LTR ERVL 50 185 -265 1069 342 40 27 chr13 55916711 55917261 -63827637 + HERV16 LTR ERVL 917 1473 -3523 234 155 19 117 chr13 55917334 55917437 -63827461 + MER52A LTR ERV1 1 93 -1662 1525 263 44 21 chr13 55917438 55917913 -63826985 + HERV16 LTR ERVL 1724 2209 -2787 218 191 0 16 chr13 55918211 55918274 -63826624 + (TA)n Simple_repeat Simple_repeat 2 63 0 34 72 0 0 chr13 55918299 55918368 -63826530 + AT_rich Low_complexity Low_complexity 1 69 0 2392 178 8 31 chr13 55918419 55918907 -63825991 + L1PA16 LINE L1 5683 6159 -7 1047 214 42 70 chr13 55918939 55919340 -63825558 - MER92B LTR ERV1 -54 582 193 644 338 62 8 chr13 55919850 55920090 -63824808 - MIR SINE MIR -3 259 7 21 0 0 0 chr13 55920498 55920519 -63824379 + AT_rich Low_complexity Low_complexity 1 21 0 845 224 60 104 chr13 55920879 55921263 -63823635 + MLT1A2 LTR MaLR 4 370 -4 202 294 118 0 chr13 55921704 55921789 -63823109 + MIR SINE MIR 64 158 -104 29 0 0 0 chr13 55922118 55922147 -63822751 + AT_rich Low_complexity Low_complexity 1 29 0 259 241 17 0 chr13 55922380 55922438 -63822460 + MER91B DNA MER1_type 14 72 -118 676 262 46 119 chr13 55922460 55922791 -63822107 - L2 LINE L2 -2315 999 706 1889 146 14 3 chr13 55922791 55923085 -63821813 + AluSx SINE Alu 1 297 -15 676 262 46 119 chr13 55923085 55923188 -63821710 - L2 LINE L2 -2608 706 597 335 220 34 11 chr13 55923280 55923401 -63821497 + MLT1D LTR MaLR 47 140 -269 420 323 101 16 chr13 55923489 55923867 -63821031 + L1M4 LINE L1 3932 4341 -1805 296 290 62 28 chr13 55923890 55924035 -63820863 + L1ME2 LINE L1 5989 6138 -26 225 65 0 0 chr13 55924323 55924354 -63820544 + (CA)n Simple_repeat Simple_repeat 1 31 0 629 252 189 25 chr13 55924664 55924982 -63819916 + MLT1D LTR MaLR 109 478 -27 370 372 85 45 chr13 55924985 55925410 -63819488 - L2 LINE L2 -396 2918 2477 21 57 0 0 chr13 55925519 55925554 -63819344 + AT_rich Low_complexity Low_complexity 1 35 0 2168 138 0 0 chr13 55925860 55926172 -63818726 + AluSx SINE Alu 1 312 0 277 145 32 0 chr13 55927032 55927094 -63817804 + GA-rich Low_complexity Low_complexity 3 66 0 1403 283 16 79 chr13 55927177 55927724 -63817174 - LTR40a LTR ERVL 0 519 7 1785 130 68 92 chr13 55928151 55928334 -63816564 - THE1B LTR MaLR -2 362 176 2059 98 31 0 chr13 55928334 55928620 -63816278 - AluY SINE Alu -16 295 1 1785 130 68 92 chr13 55928620 55928652 -63816246 - THE1B LTR MaLR -188 176 145 2162 127 3 0 chr13 55928652 55928959 -63815939 + AluSx SINE Alu 3 310 -2 1785 130 68 92 chr13 55928959 55929112 -63815786 - THE1B LTR MaLR -219 145 2 10935 105 9 7 chr13 55929113 55930322 -63814576 - THE1B-int LTR MaLR 0 1580 365 2777 7 0 0 chr13 55930322 55930627 -63814271 + AluYa5 SINE Alu 1 305 -6 10935 105 9 7 chr13 55930627 55930993 -63813905 - THE1B-int LTR MaLR -1215 365 1 1970 126 73 56 chr13 55930993 55931035 -63813863 - THE1B LTR MaLR 0 364 324 2206 95 16 0 chr13 55931035 55931339 -63813559 + AluSp SINE Alu 1 309 -4 1970 126 73 56 chr13 55931339 55931654 -63813244 - THE1B LTR MaLR -40 324 1 24 32 0 0 chr13 55931655 55931686 -63813212 + AT_rich Low_complexity Low_complexity 1 31 0 248 264 39 45 chr13 55932185 55932340 -63812558 - L1MC4 LINE L1 -197 7845 7692 1394 166 24 3 chr13 55932546 55932841 -63812057 + L1MA9 LINE L1 6012 6312 0 1090 294 81 18 chr13 55932925 55933479 -63811419 - L1ME3A LINE L1 -214 5956 5368 409 320 91 20 chr13 55933493 55933746 -63811152 - L1ME3A LINE L1 -836 5310 5040 350 275 122 18 chr13 55933838 55934060 -63810838 - L1ME3A LINE L1 -1289 4857 4613 333 289 113 16 chr13 55934067 55934160 -63810738 - L1ME3A LINE L1 -1599 4547 4465 252 0 0 0 chr13 55934160 55934188 -63810710 + (TA)n Simple_repeat Simple_repeat 2 29 0 2188 112 3 0 chr13 55934188 55934482 -63810416 - AluSg SINE Alu -15 295 1 333 289 113 16 chr13 55934482 55934581 -63810317 - L1ME3A LINE L1 -1680 4466 4335 28 48 0 0 chr13 55934739 55934781 -63810117 + AT_rich Low_complexity Low_complexity 1 42 0 5014 183 19 11 chr13 55934841 55935895 -63809003 + L1MA7 LINE L1 5196 6255 -36 21 0 0 0 chr13 55936162 55936183 -63808715 + AT_rich Low_complexity Low_complexity 1 21 0 1591 156 18 18 chr13 55936429 55936739 -63808159 - AluSq SINE Alu 0 310 1 1368 102 14 9 chr13 55936774 55936989 -63807909 - L1PA14 LINE L1 0 6161 5946 1785 240 70 26 chr13 55937101 55937684 -63807214 - L1MC3 LINE L1 -8 7777 7169 1451 215 109 25 chr13 55937695 55938179 -63806719 - L1MC3 LINE L1 -699 7086 6562 375 196 59 0 chr13 55938225 55938327 -63806571 - L1M LINE L1 -966 5378 5271 1682 263 44 58 chr13 55938343 55939251 -63805647 - L1M4 LINE L1 -1697 4449 3555 203 351 91 0 chr13 55939460 55939537 -63805361 + L2 LINE L2 3178 3261 -11 329 290 111 0 chr13 55939881 55940043 -63804855 - LTR37B LTR ERV1 -10 458 279 593 221 101 7 chr13 55940046 55940195 -63804703 - LTR40b LTR ERVL -2 460 298 237 262 33 0 chr13 55940257 55940318 -63804580 - MER67D LTR ERV1 -3 511 449 953 231 74 42 chr13 55940451 55940712 -63804186 - MER67D LTR ERV1 -78 436 192 2134 117 0 3 chr13 55940712 55941010 -63803888 + AluSx SINE Alu 2 298 -14 953 231 74 42 chr13 55941010 55941039 -63803859 - MER67D LTR ERV1 -322 192 165 284 317 0 0 chr13 55941040 55941115 -63803783 + G-rich Low_complexity Low_complexity 1 78 -26 3672 96 4 2 chr13 55941115 55941625 -63803273 - MER9 LTR ERVK 0 511 1 284 317 0 0 chr13 55941625 55941653 -63803245 + G-rich Low_complexity Low_complexity 77 104 0 728 206 0 7 chr13 55941654 55941809 -63803089 - MER67D LTR ERV1 -358 156 3 598 221 84 0 chr13 55941864 55942033 -63802865 - LTR40a LTR ERVL -279 183 3 2266 161 87 79 chr13 55942052 55942626 -63802272 + MER4A LTR ERV1 1 584 -80 2056 123 0 0 chr13 55942626 55942941 -63801957 - AluSc SINE Alu 0 317 3 2266 161 87 79 chr13 55942941 55943023 -63801875 + MER4A LTR ERV1 584 664 0 886 199 75 140 chr13 55943489 55944127 -63800771 - MER4A LTR ERV1 -2 697 79 195 42 0 0 chr13 55944127 55944151 -63800747 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 886 199 75 140 chr13 55944151 55944226 -63800672 - MER4A LTR ERV1 -620 79 1 788 271 158 17 chr13 55944375 55944722 -63800176 - MSTD LTR MaLR 0 396 1 582 217 0 8 chr13 55945038 55945158 -63799740 - AluJb SINE Alu -15 297 179 655 154 37 0 chr13 55945626 55945762 -63799136 + L1MA4A LINE L1 6160 6300 -3 1510 192 18 39 chr13 55945905 55946239 -63798659 - LTR47B LTR ERVL 0 443 117 1096 124 36 26 chr13 55946208 55946402 -63798496 - LTR47A LTR ERVL -256 196 1 * 31 44 0 0 chr13 55946595 55946640 -63798258 + AT_rich Low_complexity Low_complexity 1 45 0 551 223 26 104 chr13 55946891 55947084 -63797814 - MER4C LTR ERV1 -12 453 276 722 209 10 94 chr13 55947638 55947839 -63797059 + MER20 DNA MER1_type 36 219 0 9302 187 17 15 chr13 55948946 55950663 -63794235 + L1MA3 LINE L1 9 1728 -5837 334 220 44 11 chr13 55950658 55950749 -63794149 + L1MA3 LINE L1 5589 5682 -1883 * 16213 184 32 12 chr13 55950748 55950818 -63794080 + L1MA2 LINE L1 22 89 -7634 246 32 0 0 chr13 55950818 55950849 -63794049 + (CA)n Simple_repeat Simple_repeat 2 32 0 16213 184 32 12 chr13 55950849 55952684 -63792214 + L1MA2 LINE L1 89 1887 -5836 2250 86 10 0 chr13 55952684 55952975 -63791923 + AluSc SINE Alu 1 294 -15 16213 184 32 12 chr13 55952975 55958344 -63786554 + L1MA2 LINE L1 1887 7718 -5 1650 149 37 12 chr13 55958363 55958691 -63786207 + L1MA3 LINE L1 5676 6011 -1554 448 147 0 0 chr13 55958703 55958778 -63786120 + L1M1 LINE L1 5547 5621 -683 529 136 0 0 chr13 55958778 55958859 -63786039 + L1MA3 LINE L1 5996 6076 -1489 * 6090 161 12 18 chr13 55958834 55960344 -63784554 + L1MA3 LINE L1 5986 7488 -236 2379 79 0 3 chr13 55960344 55960647 -63784251 + AluY SINE Alu 1 302 -9 6090 161 12 18 chr13 55960647 55960882 -63784016 + L1MA3 LINE L1 7488 7723 -1 24 32 0 0 chr13 55962923 55962954 -63781944 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 55963375 55963396 -63781502 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 55963489 55963513 -63781385 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 55965148 55965176 -63779722 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 55965365 55965386 -63779512 + AT_rich Low_complexity Low_complexity 1 21 0 383 273 23 26 chr13 55966624 55966794 -63778104 - L1MD2 LINE L1 -1 7803 6201 2723 117 9 26 chr13 55966826 55967280 -63777618 - L1PA13 LINE L1 0 6163 5718 252 175 53 18 chr13 55967281 55967338 -63777560 - L1MD2 LINE L1 -182 6177 6119 2121 113 3 3 chr13 55967416 55967709 -63777189 - AluSc SINE Alu -12 297 5 1967 149 0 3 chr13 55967722 55968018 -63776880 - AluSg SINE Alu -15 295 1 1309 195 27 37 chr13 55968067 55968395 -63776503 + L1MA8 LINE L1 5964 6288 -3 779 206 56 6 chr13 55969262 55969422 -63775476 - AluJb SINE Alu -15 297 130 250 317 64 32 chr13 55969478 55969759 -63775139 - HAL1b LINE L1 -838 510 221 1749 124 49 114 chr13 55969895 55970152 -63774746 - L1MA5 LINE L1 0 6300 6048 262 62 0 0 chr13 55970152 55970184 -63774714 - U2 snRNA snRNA -155 33 2 1749 124 49 114 chr13 55970184 55970323 -63774575 - L1MA5 LINE L1 -252 6048 5901 261 128 0 0 chr13 55971815 55971862 -63773036 + (TA)n Simple_repeat Simple_repeat 1 47 0 1996 118 0 27 chr13 55971922 55972219 -63772679 + AluSg SINE Alu 1 289 -21 884 321 56 48 chr13 55972876 55973433 -63771465 - MLT2E LTR ERVL -52 576 16 840 315 40 52 chr13 55974118 55974860 -63770038 + L2 LINE L2 2580 3313 0 26 93 0 0 chr13 55974909 55974984 -63769914 + AT_rich Low_complexity Low_complexity 1 75 0 657 245 20 0 chr13 55976101 55976252 -63768646 + L1MC1 LINE L1 6179 6332 -1 21 36 0 0 chr13 55976731 55976759 -63768139 + AT_rich Low_complexity Low_complexity 1 28 0 305 320 115 33 chr13 55977480 55977602 -63767296 + L2 LINE L2 3141 3272 0 26 19 6 0 chr13 55977747 55977812 -63767086 + AT_rich Low_complexity Low_complexity 1 33 0 2386 269 60 98 chr13 55978145 55979659 -63765239 + L1M4 LINE L1 5 1460 -5082 3004 207 31 15 chr13 55979680 55980360 -63764538 + L1MB5 LINE L1 5484 6174 0 2173 88 0 14 chr13 55981693 55981976 -63762922 + AluSg SINE Alu 14 292 -18 355 276 184 12 chr13 55982064 55982227 -63762671 + L2 LINE L2 3123 3313 0 21 0 0 0 chr13 55983904 55983925 -63760973 + AT_rich Low_complexity Low_complexity 1 21 0 481 274 122 42 chr13 55984534 55985033 -63759865 + L1M4 LINE L1 2411 2949 -3876 * 1298 233 16 10 chr13 55985032 55985341 -63759557 - L1M2 LINE L1 -535 5777 5467 405 125 88 0 chr13 55985341 55985421 -63759477 + L1MA8 LINE L1 6050 6136 -155 * 839 176 6 18 chr13 55985420 55985585 -63759313 - L1M2 LINE L1 -677 5491 5329 1523 231 25 39 chr13 55985586 55986076 -63758822 + L1MA9 LINE L1 5785 6267 -45 801 288 89 6 chr13 55986296 55986823 -63758075 + L1M4 LINE L1 3391 3961 -2683 391 216 45 11 chr13 55986830 55986918 -63757980 + MLT-int LTR MaLR 1321 1411 -324 2177 214 108 58 chr13 55986924 55987827 -63757071 - MLT-int LTR MaLR -171 1564 533 957 280 40 13 chr13 55987859 55988231 -63756667 - L1MA9 LINE L1 -38 6274 5893 2568 250 35 45 chr13 55988262 55989733 -63755165 - L1 LINE L1 -3210 3957 2495 786 311 8 12 chr13 55989732 55989983 -63754915 - L1 LINE L1 -5550 1618 1369 * 2139 307 95 33 chr13 55990131 55991430 -63753468 - L1 LINE L1 -5789 1379 1 1754 238 59 30 chr13 55991428 55991957 -63752941 - MLT1A1-int LTR MaLR -1191 544 1 * 254 260 0 52 chr13 55991975 55992052 -63752846 - MLT1A1-int LTR MaLR -1294 77 5 877 235 118 62 chr13 55992056 55992308 -63752590 - MLT1A1 LTR MaLR 0 365 143 1494 180 7 39 chr13 55992308 55992613 -63752285 - AluSx SINE Alu -17 295 1 877 235 118 62 chr13 55992613 55992765 -63752133 - MLT1A1 LTR MaLR -222 143 1 185 420 51 6 chr13 55992795 55992952 -63751946 - L2 LINE L2 -243 3029 2866 195 357 31 10 chr13 55993107 55993205 -63751693 - L2 LINE L2 -601 2713 2614 307 369 8 23 chr13 55993280 55993410 -63751488 - L2 LINE L2 -8 3264 3137 2197 42 4 0 chr13 55994295 55994555 -63750343 - AluY SINE Alu -37 274 14 6320 101 9 7 chr13 55994564 55995477 -63749421 - L1PA10 LINE L1 0 6168 5254 317 171 57 0 chr13 55995474 55995544 -63749354 + L1P LINE L1 3231 3304 -2842 * 2561 38 3 0 chr13 55995537 55995857 -63749041 + L1P LINE L1 4953 5273 -873 997 111 238 16 chr13 55995868 55996057 -63748841 + L1PA7 LINE L1 5923 6153 -1 * 5021 145 10 2 chr13 55996045 55996880 -63748018 + L1P LINE L1 3285 4125 -2021 281 188 0 0 chr13 55997433 55997497 -63747401 - L1MB7 LINE L1 -19 6165 6102 23 78 0 0 chr13 55997627 55997678 -63747220 + AT_rich Low_complexity Low_complexity 1 51 0 33 56 0 0 chr13 55998187 55998241 -63746657 + AT_rich Low_complexity Low_complexity 1 54 0 8622 240 37 31 chr13 55998295 55999542 -63745356 - L1MC3 LINE L1 -33 7752 6514 1795 120 4 0 chr13 55999542 55999801 -63745097 - AluSx SINE Alu -52 260 1 8622 240 37 31 chr13 55999801 56000762 -63744136 - L1MC3 LINE L1 -1271 6514 5514 1923 154 55 0 chr13 56000762 56001106 -63743792 - L1PB3 LINE L1 -1 6153 5791 8622 240 37 31 chr13 56001106 56001955 -63742943 - L1MC3 LINE L1 -2271 5514 4672 1102 264 93 11 chr13 56001925 56002007 -63742891 - L1MC3 LINE L1 -1988 4158 4084 * 9848 149 6 2 chr13 56002007 56004488 -63740410 - L1PA10 LINE L1 -2 6166 3675 1102 264 93 11 chr13 56004488 56004868 -63740030 - L1MC3 LINE L1 -2062 4084 3658 21 57 0 0 chr13 56005685 56005720 -63739178 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr13 56006189 56006222 -63738676 + AT_rich Low_complexity Low_complexity 1 33 0 348 24 0 0 chr13 56006302 56006343 -63738555 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 182 289 33 66 chr13 56007052 56007173 -63737725 - MIR SINE MIR -98 164 48 269 87 0 22 chr13 56009460 56009506 -63735392 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 221 163 20 0 chr13 56009507 56009556 -63735342 + GA-rich Low_complexity Low_complexity 1 50 0 336 225 11 11 chr13 56009599 56009688 -63735210 - L1M LINE L1 -765 5401 5313 21 57 0 0 chr13 56009710 56009745 -63735153 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 56009900 56009920 -63734978 + (A)n Simple_repeat Simple_repeat 1 20 0 697 185 0 30 chr13 56009989 56010124 -63734774 - L1M4 LINE L1 -1983 4232 4102 1162 287 67 40 chr13 56010134 56011235 -63733663 - L1MEc LINE L1 -3444 2771 1684 1422 277 93 48 chr13 56011236 56011846 -63733052 - MER76 LTR ERV -30 658 21 1011 267 91 16 chr13 56011862 56012487 -63732411 - L1MEc LINE L1 -4724 1672 1001 342 219 15 80 chr13 56012538 56012620 -63732278 - L1MEc LINE L1 -5502 894 823 2168 78 13 33 chr13 56012620 56012926 -63731972 - AluY SINE Alu -10 301 2 342 219 15 80 chr13 56012926 56012980 -63731918 - L1MEc LINE L1 -5573 823 767 279 161 36 18 chr13 56013018 56013074 -63731824 + MER20 DNA MER1_type 163 219 0 295 290 20 0 chr13 56013075 56013175 -63731723 + L1MEc LINE L1 633 734 -5662 33 66 0 0 chr13 56013296 56013357 -63731541 + AT_rich Low_complexity Low_complexity 1 61 0 534 222 111 18 chr13 56013437 56013662 -63731236 + Charlie7 DNA MER1_type 1591 1836 -776 515 238 138 32 chr13 56013692 56013953 -63730945 + Charlie7 DNA MER1_type 2169 2477 -135 2011 132 0 0 chr13 56013953 56014259 -63730639 - AluSx SINE Alu 0 309 4 515 238 138 32 chr13 56014259 56014337 -63730561 + Charlie7 DNA MER1_type 2477 2545 -67 226 235 0 82 chr13 56014342 56014440 -63730458 - L1MC4 LINE L1 -1339 6703 6614 * 276 250 23 0 chr13 56014364 56014452 -63730446 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr13 56014678 56014701 -63730197 + AT_rich Low_complexity Low_complexity 1 23 0 346 337 79 20 chr13 56016586 56016788 -63728110 + L2 LINE L2 2034 2247 -1067 783 261 28 19 chr13 56017946 56018157 -63726741 + MER20 DNA MER1_type 6 218 -1 23 33 0 0 chr13 56018872 56018902 -63725996 + AT_rich Low_complexity Low_complexity 1 30 0 218 260 29 48 chr13 56018981 56019085 -63725813 - L2 LINE L2 -90 3223 3122 409 297 68 106 chr13 56019199 56019448 -63725450 - L2 LINE L2 -250 3063 2806 1967 108 9 52 chr13 56019448 56019773 -63725125 + AluSx SINE Alu 1 311 -1 409 297 68 106 chr13 56019773 56020165 -63724733 - L2 LINE L2 -507 2806 2451 2213 75 36 16 chr13 56020790 56021095 -63723803 + AluY SINE Alu 1 311 0 9309 209 14 20 chr13 56021228 56023349 -63721549 - L1P LINE L1 -811 5335 3229 4494 142 9 9 chr13 56023350 56024098 -63720800 + L1PA15 LINE L1 5371 6118 -47 2515 63 0 0 chr13 56024405 56024708 -63720190 - AluY SINE Alu -8 303 1 201 169 34 17 chr13 56025703 56025762 -63719136 + (TTTAA)n Simple_repeat Simple_repeat 5 64 0 212 103 51 0 chr13 56026229 56026268 -63718630 + (CATA)n Simple_repeat Simple_repeat 3 43 0 272 290 59 24 chr13 56026357 56026526 -63718372 - L1M4 LINE L1 -2168 3978 3804 208 324 15 15 chr13 56027193 56027261 -63717637 + L2 LINE L2 3192 3259 -54 2102 115 0 3 chr13 56027959 56028254 -63716644 - AluSq SINE Alu -8 305 12 201 234 21 0 chr13 56028535 56028582 -63716316 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 1071 199 0 5 chr13 56028592 56028808 -63716090 - L1PA15 LINE L1 -1 6164 5950 4854 271 42 26 chr13 56028827 56028954 -63715944 - L1PA13 LINE L1 -2763 4034 3911 1918 155 23 3 chr13 56028954 56029257 -63715641 - AluSx SINE Alu -1 311 3 4854 271 42 26 chr13 56029257 56031797 -63713101 - L1PA13 LINE L1 -2886 3911 1323 1959 329 31 42 chr13 56031774 56032618 -63712280 - L1PA13 LINE L1 -5952 835 1 * 965 275 96 33 chr13 56034339 56034768 -63710130 + LTR40a LTR ERVL 15 470 -49 463 233 0 50 chr13 56035709 56035829 -63709069 - L1M4c LINE L1 -6251 133 20 895 124 16 32 chr13 56037240 56037426 -63707472 + L1MA7 LINE L1 6108 6290 -1 2013 143 0 3 chr13 56038648 56038948 -63705950 + AluSx SINE Alu 1 299 -13 228 67 0 0 chr13 56039736 56039766 -63705132 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1795 191 123 5 chr13 56039930 56040313 -63704585 - MSTA LTR MaLR 0 428 1 8517 181 25 5 chr13 56040313 56041931 -63702967 - MSTA-int LTR MaLR 0 1651 1 1898 159 148 3 chr13 56041931 56042303 -63702595 - MSTA LTR MaLR 0 428 3 676 223 103 0 chr13 56042404 56042588 -63702310 - L1MA9 LINE L1 -1 6311 6109 9607 147 36 13 chr13 56042588 56044287 -63700611 - Tigger3(Golem) DNA MER2_type -1 3028 1291 26 93 0 0 chr13 56044509 56044584 -63700314 + AT_rich Low_complexity Low_complexity 1 75 0 840 315 40 52 chr13 56044633 56045375 -63699523 - L2 LINE L2 0 3313 2580 894 321 56 48 chr13 56046060 56046617 -63698281 + MLT2E LTR ERVL 16 576 -52 2014 114 0 27 chr13 56047274 56047571 -63697327 - AluSg SINE Alu -21 289 1 279 122 0 0 chr13 56047631 56047680 -63697218 + (TA)n Simple_repeat Simple_repeat 2 50 0 1749 124 49 114 chr13 56049172 56049311 -63695587 + L1MA5 LINE L1 5901 6048 -252 262 62 0 0 chr13 56049311 56049343 -63695555 + U2 snRNA snRNA 2 33 -155 1749 124 49 114 chr13 56049343 56049600 -63695298 + L1MA5 LINE L1 6048 6300 0 250 317 64 32 chr13 56049736 56050017 -63694881 + HAL1b LINE L1 221 510 -838 779 206 56 6 chr13 56050073 56050233 -63694665 + AluJb SINE Alu 130 297 -15 1309 195 27 37 chr13 56051100 56051428 -63693470 - L1MA8 LINE L1 -3 6288 5964 2002 149 0 0 chr13 56051477 56051772 -63693126 + AluSg SINE Alu 1 295 -15 2095 116 3 3 chr13 56051785 56052078 -63692820 + AluSc SINE Alu 5 297 -12 252 175 53 18 chr13 56052156 56052213 -63692685 + L1MD2 LINE L1 6119 6177 -182 2749 114 9 26 chr13 56052214 56052668 -63692230 + L1PA13 LINE L1 5718 6163 0 383 273 23 26 chr13 56052700 56052870 -63692028 + L1MD2 LINE L1 6201 6358 -1 21 0 0 0 chr13 56054108 56054129 -63690769 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 56054318 56054346 -63690552 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 56055981 56056005 -63688893 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 56056098 56056119 -63688779 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 56056540 56056571 -63688327 + AT_rich Low_complexity Low_complexity 1 31 0 5594 148 16 89 chr13 56058615 56058850 -63686048 - L1MA3 LINE L1 -1 7723 7473 2409 75 0 3 chr13 56058850 56059155 -63685743 - AluY SINE Alu -7 304 1 5594 148 16 89 chr13 56059155 56061136 -63683762 - L1MA3 LINE L1 -251 7473 5676 16172 184 32 12 chr13 56061155 56066524 -63678374 - L1MA2 LINE L1 -5 7718 2456 2250 86 10 0 chr13 56066524 56066815 -63678083 - AluSc SINE Alu -15 294 1 16172 184 32 12 chr13 56066815 56068650 -63676248 - L1MA2 LINE L1 -5267 2456 89 246 32 0 0 chr13 56068650 56068681 -63676217 + (TG)n Simple_repeat Simple_repeat 2 32 0 16172 184 32 12 chr13 56068681 56068751 -63676147 - L1MA2 LINE L1 -7634 89 22 334 220 44 11 chr13 56068750 56068841 -63676057 - L1MA3 LINE L1 -1883 5682 5589 * 9372 186 16 14 chr13 56068836 56070552 -63674346 - L1MA3 LINE L1 -5837 1728 9 722 209 10 94 chr13 56071661 56071862 -63673036 - MER20 DNA MER1_type 0 219 36 551 223 26 104 chr13 56072416 56072609 -63672289 + MER4C LTR ERV1 276 453 -12 31 44 0 0 chr13 56072860 56072905 -63671993 + AT_rich Low_complexity Low_complexity 1 45 0 1096 124 36 26 chr13 56073096 56073290 -63671608 + LTR47A LTR ERVL 1 196 -256 * 1494 195 18 39 chr13 56073259 56073593 -63671305 + LTR47B LTR ERVL 117 443 0 655 154 37 0 chr13 56073736 56073872 -63671026 - L1MA4A LINE L1 -3 6300 6160 582 217 0 8 chr13 56074340 56074460 -63670438 + AluJb SINE Alu 179 297 -15 788 271 158 17 chr13 56074776 56075123 -63669775 + MSTD LTR MaLR 1 396 0 881 199 75 140 chr13 56075272 56075347 -63669551 + MER4A LTR ERV1 1 79 -620 195 42 0 0 chr13 56075347 56075371 -63669527 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 881 199 75 140 chr13 56075371 56076009 -63668889 + MER4A LTR ERV1 79 697 -2 2255 168 80 73 chr13 56076475 56076557 -63668341 - MER4A LTR ERV1 0 664 584 2057 123 0 0 chr13 56076557 56076872 -63668026 + AluSc SINE Alu 3 317 0 2255 168 80 73 chr13 56076872 56077446 -63667452 - MER4A LTR ERV1 -80 584 1 598 221 84 0 chr13 56077465 56077634 -63667264 + LTR40a LTR ERVL 3 183 -279 728 206 0 7 chr13 56077689 56077844 -63667054 + MER67D LTR ERV1 3 156 -358 3642 96 4 4 chr13 56077873 56078384 -63666514 + MER9 LTR ERVK 1 511 0 377 222 0 11 chr13 56078417 56078507 -63666391 - L1M LINE L1 -765 5401 5313 21 57 0 0 chr13 56078529 56078564 -63666334 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 56078719 56078739 -63666159 + (A)n Simple_repeat Simple_repeat 1 20 0 697 185 0 30 chr13 56078808 56078943 -63665955 - L1M4 LINE L1 -1983 4232 4102 1162 287 67 40 chr13 56078953 56080054 -63664844 - L1MEc LINE L1 -3444 2771 1684 1422 277 93 48 chr13 56080055 56080665 -63664233 - MER76 LTR ERV -30 658 21 1011 267 91 16 chr13 56080681 56081306 -63663592 - L1MEc LINE L1 -4724 1672 1001 342 219 15 80 chr13 56081357 56081439 -63663459 - L1MEc LINE L1 -5502 894 823 2168 78 13 33 chr13 56081439 56081745 -63663153 - AluY SINE Alu -10 301 2 342 219 15 80 chr13 56081745 56081799 -63663099 - L1MEc LINE L1 -5573 823 767 279 161 36 18 chr13 56081837 56081893 -63663005 + MER20 DNA MER1_type 163 219 0 295 290 20 0 chr13 56081894 56081994 -63662904 + L1MEc LINE L1 633 734 -5662 33 66 0 0 chr13 56082115 56082176 -63662722 + AT_rich Low_complexity Low_complexity 1 61 0 534 222 111 18 chr13 56082256 56082481 -63662417 + Charlie7 DNA MER1_type 1591 1836 -776 515 238 138 32 chr13 56082511 56082772 -63662126 + Charlie7 DNA MER1_type 2169 2477 -135 2011 132 0 0 chr13 56082772 56083078 -63661820 - AluSx SINE Alu 0 309 4 515 238 138 32 chr13 56083078 56083156 -63661742 + Charlie7 DNA MER1_type 2477 2545 -67 226 235 0 82 chr13 56083161 56083259 -63661639 - L1MC4 LINE L1 -1339 6703 6614 * 276 250 23 0 chr13 56083183 56083271 -63661627 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr13 56083497 56083520 -63661378 + AT_rich Low_complexity Low_complexity 1 23 0 210 296 160 48 chr13 56086314 56086439 -63658459 + L2 LINE L2 3175 3313 0 1450 204 24 31 chr13 56087150 56087532 -63657366 - L1 LINE L1 -2500 3646 3268 23 0 0 0 chr13 56088008 56088031 -63656867 + AT_rich Low_complexity Low_complexity 1 23 0 1267 172 19 4 chr13 56088725 56088986 -63655912 - L1 LINE L1 -840 5306 5042 3103 174 48 0 chr13 56088998 56089608 -63655290 - L1PB4 LINE L1 -2 6154 5516 2080 197 36 2 chr13 56089875 56090287 -63654611 + MSTB LTR MaLR 1 426 0 303 279 99 9 chr13 56090405 56090516 -63654382 - L2 LINE L2 0 3313 3193 2115 112 3 3 chr13 56090804 56091099 -63653799 - AluSg SINE Alu -11 299 5 1978 109 0 27 chr13 56091229 56091523 -63653375 - AluSx SINE Alu -26 286 1 23 0 0 0 chr13 56091633 56091656 -63653242 + AT_rich Low_complexity Low_complexity 1 23 0 327 49 0 0 chr13 56093179 56093220 -63651678 + (CA)n Simple_repeat Simple_repeat 2 42 0 801 288 62 60 chr13 56093751 56094185 -63650713 + L1MC4 LINE L1 6496 6930 -1112 324 83 0 0 chr13 56094223 56094271 -63650627 + (TG)n Simple_repeat Simple_repeat 1 48 0 596 132 0 0 chr13 56094316 56094422 -63650476 - LOR1-int LTR ERV1 -3846 4274 4169 1463 205 10 106 chr13 56094422 56094767 -63650131 + L1 LINE L1 3994 4278 -1868 3260 89 13 4 chr13 56094767 56095228 -63649670 - L1PA11 LINE L1 0 6174 5710 1463 205 10 106 chr13 56095228 56095380 -63649518 + L1 LINE L1 4278 4443 -1703 1579 194 25 16 chr13 56095384 56095703 -63649195 - MSTB LTR MaLR -103 323 2 1630 156 52 3 chr13 56095703 56096049 -63648849 + L1MA8 LINE L1 5923 6285 -6 28 29 0 0 chr13 56096049 56096084 -63648814 + AT_rich Low_complexity Low_complexity 1 35 0 4734 157 19 47 chr13 56096154 56096284 -63648614 + L1PA16 LINE L1 5059 5191 -975 387 0 0 0 chr13 56096284 56096327 -63648571 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4734 157 19 47 chr13 56096327 56096576 -63648322 + L1PA16 LINE L1 5191 5446 -720 1954 88 11 0 chr13 56096576 56096836 -63648062 + AluSq SINE Alu 44 306 -7 4734 157 19 47 chr13 56096836 56097599 -63647299 + L1PA16 LINE L1 5446 6166 0 504 320 68 31 chr13 56097747 56098203 -63646695 + L1ME3A LINE L1 4927 5399 -747 249 229 14 43 chr13 56098308 56098378 -63646520 + L1ME3A LINE L1 5461 5528 -638 24 77 0 0 chr13 56098386 56098438 -63646460 + AT_rich Low_complexity Low_complexity 1 52 0 789 271 89 30 chr13 56098508 56098947 -63645951 + L1ME3A LINE L1 5602 6066 -104 23 86 0 0 chr13 56099319 56099377 -63645521 + AT_rich Low_complexity Low_complexity 1 58 0 233 200 31 31 chr13 56099641 56099706 -63645192 + MER92B LTR ERV1 254 318 -318 231 36 0 0 chr13 56100489 56100517 -63644381 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 186 118 0 0 chr13 56100609 56100643 -63644255 + (TA)n Simple_repeat Simple_repeat 2 35 0 1791 127 0 0 chr13 56100643 56100902 -63643996 - AluSq SINE Alu -18 295 37 21 0 0 0 chr13 56101169 56101190 -63643708 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 56101325 56101352 -63643546 + AT_rich Low_complexity Low_complexity 1 27 0 1070 309 28 40 chr13 56101815 56102317 -63642581 + L1ME1 LINE L1 5649 6144 -22 404 256 36 54 chr13 56102368 56102536 -63642362 + L1MC4 LINE L1 6922 7086 -956 1507 255 82 18 chr13 56102550 56103150 -63641748 + L1MC4 LINE L1 7259 7896 -146 265 242 96 51 chr13 56103212 56103390 -63641508 + HsTC2 DNA Tc2 1710 1895 -3 23 33 0 0 chr13 56105285 56105315 -63639583 + AT_rich Low_complexity Low_complexity 1 30 0 353 318 159 0 chr13 56106132 56106258 -63638640 - L2 LINE L2 -6 3266 3121 745 262 43 0 chr13 56107680 56107867 -63637031 + MER58A DNA MER1_type 30 224 0 32 67 0 0 chr13 56107968 56108028 -63636870 + AT_rich Low_complexity Low_complexity 1 60 0 1611 201 61 18 chr13 56108222 56108614 -63636284 + L1MA8 LINE L1 5877 6285 -6 233 132 75 0 chr13 56108645 56108698 -63636200 + Charlie5 DNA MER1_type 2425 2481 -131 268 374 38 0 chr13 56108822 56108953 -63635945 + L2 LINE L2 2948 3083 -189 31 42 0 42 chr13 56109155 56109226 -63635672 + AT_rich Low_complexity Low_complexity 1 68 0 211 339 54 9 chr13 56109636 56109748 -63635150 + L2 LINE L2 3196 3312 -1 2075 138 132 5 chr13 56109892 56110270 -63634628 + MSTA LTR MaLR 1 426 -2 7877 156 64 14 chr13 56110274 56111777 -63633121 + MSTA-int LTR MaLR 3 1580 0 623 178 9 0 chr13 56111777 56111884 -63633014 + MSTA LTR MaLR 1 108 -320 1865 179 15 3 chr13 56111998 56112328 -63632570 - L1PA15 LINE L1 -31 6134 5801 354 242 0 0 chr13 56112328 56112394 -63632504 - Tigger3(Golem) DNA MER2_type -2963 66 1 695 172 67 28 chr13 56112394 56112574 -63632324 - L1MA9 LINE L1 -201 6111 5925 1810 184 47 35 chr13 56112576 56113121 -63631777 + MLT2A2 LTR ERVL 3 554 0 1034 193 4 34 chr13 56113121 56113360 -63631538 - L1MA9 LINE L1 -383 5929 5698 369 193 5 13 chr13 56113360 56113433 -63631465 + LTR9 LTR ERV1 554 612 0 232 333 38 8 chr13 56113435 56113567 -63631331 - L1ME LINE L1 -611 5553 5418 22 0 0 0 chr13 56113966 56113988 -63630910 + AT_rich Low_complexity Low_complexity 1 22 0 2092 117 3 10 chr13 56114799 56115099 -63629799 + AluSp SINE Alu 1 298 -15 21 0 0 0 chr13 56115397 56115418 -63629480 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 56115698 56115726 -63629172 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 56116357 56116380 -63628518 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 56116602 56116626 -63628272 + AT_rich Low_complexity Low_complexity 1 24 0 1821 201 64 48 chr13 56117784 56118203 -63626695 - MSTB LTR MaLR 0 426 1 23 68 0 0 chr13 56119345 56119389 -63625509 + AT_rich Low_complexity Low_complexity 1 44 0 190 408 115 27 chr13 56119601 56119861 -63625037 + L2 LINE L2 2987 3269 -3 22 35 0 0 chr13 56119933 56119962 -63624936 + AT_rich Low_complexity Low_complexity 1 29 0 529 179 9 9 chr13 56120308 56120420 -63624478 - L1MA10 LINE L1 -2 6332 6221 505 146 12 0 chr13 56120697 56120779 -63624119 + THE1B LTR MaLR 1 83 -345 765 138 17 0 chr13 56120781 56120897 -63624001 + THE1B LTR MaLR 247 364 0 1335 150 0 0 chr13 56120897 56121117 -63623781 + MSTA-int LTR MaLR 1 220 -1360 5624 171 11 13 chr13 56121158 56122141 -63622757 + MSTA-int LTR MaLR 600 1580 0 1807 151 121 48 chr13 56122141 56122514 -63622384 + MSTA LTR MaLR 1 345 -83 1713 149 92 49 chr13 56122514 56122863 -63622035 - THE1B LTR MaLR 0 364 1 10604 113 20 8 chr13 56122863 56124424 -63620474 - THE1B-int LTR MaLR 0 1580 1 1966 134 77 37 chr13 56124424 56124774 -63620124 - THE1B LTR MaLR 0 364 1 1807 151 121 48 chr13 56124774 56124795 -63620103 + MSTA LTR MaLR 344 426 -2 1229 233 96 28 chr13 56124801 56125181 -63619717 + MLT2B1 LTR ERVL 41 442 -78 24 0 0 0 chr13 56125199 56125223 -63619675 + AT_rich Low_complexity Low_complexity 1 24 0 40 79 0 0 chr13 56125270 56125359 -63619539 + AT_rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr13 56126260 56126281 -63618617 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr13 56126398 56126431 -63618467 + (TA)n Simple_repeat Simple_repeat 1 33 0 2104 152 43 0 chr13 56126998 56127347 -63617551 + THE1B LTR MaLR 1 364 0 26 82 0 0 chr13 56130809 56130870 -63614028 + AT_rich Low_complexity Low_complexity 1 61 0 231 170 0 0 chr13 56131190 56131237 -63613661 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr13 56131304 56131332 -63613566 + AT_rich Low_complexity Low_complexity 1 28 0 243 61 0 0 chr13 56132161 56132194 -63612704 + (TG)n Simple_repeat Simple_repeat 2 34 0 2255 171 130 19 chr13 56132253 56132784 -63612114 - LTR10E LTR ERV1 -43 590 1 27 49 0 0 chr13 56132946 56132987 -63611911 + AT_rich Low_complexity Low_complexity 1 41 0 1187 294 43 31 chr13 56133722 56134209 -63610689 + L1MD2 LINE L1 5508 6000 -359 2285 101 30 3 chr13 56134390 56134727 -63610171 - L1PA13 LINE L1 -11 6152 5807 3514 130 15 4 chr13 56134727 56135351 -63609547 + L1PA13 LINE L1 5176 5804 -364 1396 236 81 58 chr13 56135653 56136149 -63608749 - MER67D LTR ERV1 -1 513 7 261 0 0 0 chr13 56136920 56136949 -63607949 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2293 84 3 0 chr13 56137513 56137810 -63607088 - AluSp SINE Alu -15 298 1 1539 144 39 122 chr13 56137834 56138243 -63606655 + THE1C LTR MaLR 1 375 0 190 408 115 27 chr13 56138912 56139172 -63605726 + L2 LINE L2 2987 3269 -3 22 35 0 0 chr13 56139244 56139273 -63605625 + AT_rich Low_complexity Low_complexity 1 29 0 1685 220 46 23 chr13 56139619 56140051 -63604847 - L1MA10 LINE L1 -2 6332 5891 447 183 58 8 chr13 56141222 56141342 -63603556 - THE1C LTR MaLR -1 374 249 23 33 0 0 chr13 56141477 56141507 -63603391 + AT_rich Low_complexity Low_complexity 1 30 0 594 286 91 5 chr13 56141785 56142005 -63602893 - MIR SINE MIR -5 257 19 31 26 0 0 chr13 56142101 56142139 -63602759 + AT_rich Low_complexity Low_complexity 1 38 0 25 75 0 0 chr13 56144192 56144245 -63600653 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr13 56144989 56145018 -63599880 + AT_rich Low_complexity Low_complexity 1 29 0 268 255 191 11 chr13 56145662 56145756 -63599142 + MIR SINE MIR 126 236 -26 234 188 0 0 chr13 56146630 56146678 -63598220 + (TA)n Simple_repeat Simple_repeat 2 49 0 327 179 0 0 chr13 56146755 56146822 -63598076 + (TG)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr13 56146822 56146852 -63598046 + AT_rich Low_complexity Low_complexity 1 30 0 431 67 84 0 chr13 56146896 56147015 -63597883 + (TA)n Simple_repeat Simple_repeat 2 130 0 204 350 75 0 chr13 56147051 56147131 -63597767 + MIR SINE MIR 72 157 -105 206 222 22 0 chr13 56147131 56147176 -63597722 + GA-rich Low_complexity Low_complexity 3 48 0 22 35 0 0 chr13 56147181 56147210 -63597688 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr13 56148110 56148141 -63596757 + (TG)n Simple_repeat Simple_repeat 2 32 0 28 91 0 0 chr13 56148204 56148281 -63596617 + AT_rich Low_complexity Low_complexity 1 77 0 188 369 71 24 chr13 56148293 56148461 -63596437 - L2 LINE L2 -1279 2035 1860 2034 107 0 0 chr13 56148829 56149110 -63595788 - AluSc SINE Alu -7 302 22 258 353 65 48 chr13 56149729 56149914 -63594984 - L2 LINE L2 -2568 746 553 2883 81 59 7 chr13 56149914 56149952 -63594946 - MLT2A1 LTR ERVL 0 444 409 592 13 26 0 chr13 56149952 56150029 -63594869 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 2883 81 59 7 chr13 56150029 56150412 -63594486 - MLT2A1 LTR ERVL -35 409 1 258 353 65 48 chr13 56150412 56150518 -63594380 - L2 LINE L2 -2761 553 450 679 194 29 0 chr13 56150599 56150738 -63594160 + BC200 scRNA scRNA 1 143 -57 349 244 39 85 chr13 56151247 56151505 -63593393 + L1M4 LINE L1 3708 3953 -2193 1887 145 37 0 chr13 56151562 56151859 -63593039 + AluSx SINE Alu 1 308 -4 313 290 20 0 chr13 56152246 56152346 -63592552 + U13 snRNA snRNA 1 102 -2 869 186 6 6 chr13 56152382 56152543 -63592355 + MSTC LTR MaLR 267 427 -1 310 247 12 0 chr13 56153439 56153524 -63591374 - L1MC5 LINE L1 -561 7400 7315 349 272 6 12 chr13 56153524 56153697 -63591201 + (TA)n Simple_repeat Simple_repeat 2 173 0 685 245 88 110 chr13 56153709 56154400 -63590498 - L1MC5 LINE L1 -659 7302 6627 2178 52 73 3 chr13 56154456 56154742 -63590156 + AluY SINE Alu 1 306 -5 30 0 0 0 chr13 56154906 56154936 -63589962 + AT_rich Low_complexity Low_complexity 1 30 0 356 282 115 48 chr13 56155419 56155671 -63589227 - L1ME4a LINE L1 -138 5983 5715 22 35 0 0 chr13 56155688 56155717 -63589181 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr13 56156048 56156094 -63588804 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1249 226 160 6 chr13 56156251 56156570 -63588328 - MLT1F1 LTR MaLR -2 565 198 282 238 0 0 chr13 56156646 56156709 -63588189 - MLT1F1 LTR MaLR -504 63 1 250 337 39 62 chr13 56156728 56156906 -63587992 + MIR SINE MIR 8 181 -81 355 270 10 10 chr13 56157770 56157870 -63587028 - L1ME4a LINE L1 -2675 5367 5268 813 261 51 9 chr13 56157876 56158091 -63586807 + MER58A DNA MER1_type 1 224 0 1131 258 132 18 chr13 56158092 56158647 -63586251 - L1ME4a LINE L1 -881 5265 4648 22 0 0 0 chr13 56158682 56158704 -63586194 + AT_rich Low_complexity Low_complexity 1 22 0 957 83 23 0 chr13 56158713 56158845 -63586053 + AluSc SINE Alu 166 300 -9 418 191 143 27 chr13 56158852 56158999 -63585899 - L1MD3 LINE L1 -53 7942 7779 204 308 70 51 chr13 56159026 56159182 -63585716 - L2 LINE L2 0 3313 3155 22 35 0 0 chr13 56159502 56159531 -63585367 + AT_rich Low_complexity Low_complexity 1 29 0 506 309 58 61 chr13 56160690 56161036 -63583862 - MLT1J LTR MaLR -36 475 131 2189 113 3 0 chr13 56161907 56162208 -63582690 + AluSq SINE Alu 1 302 -11 351 0 0 0 chr13 56162480 56162519 -63582379 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1532 189 26 3 chr13 56162567 56162912 -63581986 + MSTB2 LTR MaLR 15 457 0 306 320 108 29 chr13 56163036 56163342 -63581556 + HAL1 LINE L1 1100 1429 -1078 369 335 49 31 chr13 56163504 56163853 -63581045 + HAL1 LINE L1 1572 1926 -581 1080 283 70 34 chr13 56163887 56164388 -63580510 - L1ME3A LINE L1 -69 6084 5566 192 40 0 0 chr13 56164410 56164435 -63580463 + (TG)n Simple_repeat Simple_repeat 2 26 0 251 242 0 0 chr13 56164435 56164497 -63580401 - L1ME3A LINE L1 -686 5459 5398 231 232 98 12 chr13 56164738 56164820 -63580078 - L1ME3A LINE L1 -1981 4148 4060 382 340 79 59 chr13 56165417 56165686 -63579212 - L1ME3A LINE L1 -4905 1214 952 1761 181 121 5 chr13 56165686 56166073 -63578825 + MSTB1 LTR MaLR 1 432 0 382 340 79 59 chr13 56166073 56166409 -63578489 - L1ME3A LINE L1 -5167 952 597 1075 194 10 1 chr13 56166967 56167353 -63577545 - MER65A LTR ERV1 0 445 1 1111 216 32 65 chr13 56167368 56167678 -63577220 - MLT1A1 LTR MaLR -65 300 1 15909 32 12 1 chr13 56168147 56170827 -63574071 + L1PA3 LINE L1 3460 6152 -3 22 80 0 0 chr13 56170827 56170877 -63574021 + AT_rich Low_complexity Low_complexity 1 50 0 1874 166 0 3 chr13 56171134 56171435 -63573463 + AluSx SINE Alu 1 300 -12 266 139 0 0 chr13 56171927 56171970 -63572928 + MADE1 DNA Mariner 1 43 -37 1397 219 53 3 chr13 56172418 56172737 -63572161 - MER54A LTR ERVL 0 901 567 1647 242 47 91 chr13 56172745 56173381 -63571517 + MER76 LTR ERV 22 629 -59 248 213 0 0 chr13 56173388 56173435 -63571463 - MER76 LTR ERV -21 667 621 265 288 106 47 chr13 56173580 56173750 -63571148 + L2 LINE L2 3134 3313 0 25 51 0 0 chr13 56174213 56174252 -63570646 + AT_rich Low_complexity Low_complexity 1 39 0 369 58 0 0 chr13 56174331 56174383 -63570515 + (TG)n Simple_repeat Simple_repeat 2 53 0 24 77 0 0 chr13 56175474 56175526 -63569372 + AT_rich Low_complexity Low_complexity 1 52 0 1314 281 36 13 chr13 56175573 56176040 -63568858 - L1ME1 LINE L1 -44 6122 5645 252 255 66 32 chr13 56176046 56176202 -63568696 - L1ME LINE L1 -3832 2272 2106 641 321 111 33 chr13 56176362 56176937 -63567961 - L1ME LINE L1 -4669 1411 882 2326 81 7 3 chr13 56176937 56177247 -63567651 - AluY SINE Alu 0 311 1 641 321 111 33 chr13 56177247 56178009 -63566889 - L1ME LINE L1 -5198 882 1 2127 142 14 22 chr13 56178049 56178416 -63566482 - THE1B LTR MaLR 0 364 1 237 369 33 8 chr13 56179146 56179268 -63565630 - MIR SINE MIR -86 176 52 540 359 81 13 chr13 56179361 56179745 -63565153 + L2 LINE L2 2531 2940 -374 829 332 58 40 chr13 56180053 56180860 -63564038 - L2 LINE L2 -14 3299 2480 24 77 0 0 chr13 56181851 56181903 -63562995 + AT_rich Low_complexity Low_complexity 1 52 0 1769 118 4 11 chr13 56181913 56182175 -63562723 - AluY SINE Alu -11 300 41 484 286 8 0 chr13 56182182 56182308 -63562590 - AluJb SINE Alu -16 296 170 2172 131 0 0 chr13 56182322 56182627 -63562271 + AluSc SINE Alu 1 305 -4 516 72 0 0 chr13 56182649 56182718 -63562180 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 188 338 15 0 chr13 56182850 56182918 -63561980 - L2 LINE L2 -212 3060 2992 29 0 0 0 chr13 56183155 56183184 -63561714 + AT_rich Low_complexity Low_complexity 1 29 0 801 235 142 4 chr13 56183607 56183875 -63561023 + MER21B LTR ERV1 509 813 -50 3624 240 9 1 chr13 56183902 56184645 -63560253 + MER21B-int LTR ERV1 1 749 -3442 1960 163 20 20 chr13 56184656 56185013 -63559885 - L1MA5 LINE L1 -378 5922 5566 * 6964 234 58 26 chr13 56185008 56185582 -63559316 - L1 LINE L1 -1052 5796 5242 333 68 0 0 chr13 56185582 56185626 -63559272 + (TG)n Simple_repeat Simple_repeat 1 44 0 6964 234 58 26 chr13 56185626 56189424 -63555474 - L1 LINE L1 -1606 5242 1197 258 242 0 16 chr13 56189427 56189489 -63555409 + MER21B-int LTR ERV1 1560 1620 -2571 413 320 0 0 chr13 56189815 56189915 -63554983 + MLT1G1 LTR MaLR 21 120 -475 2248 105 7 0 chr13 56190212 56190516 -63554382 + AluY SINE Alu 1 306 -5 417 344 118 15 chr13 56190523 56190959 -63553939 - L1MC4 LINE L1 -864 7029 6448 969 104 0 7 chr13 56190985 56191129 -63553769 + L1PA8 LINE L1 6028 6170 -2 207 0 0 0 chr13 56191691 56191714 -63553184 + (T)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 56192067 56192090 -63552808 + AT_rich Low_complexity Low_complexity 1 23 0 340 319 35 21 chr13 56192180 56192321 -63552577 - L1M4 LINE L1 -4834 1708 1566 347 260 88 21 chr13 56192371 56192546 -63552352 + L1ME LINE L1 52 235 -5835 2082 204 41 5 chr13 56192895 56193336 -63551562 + LTR32 LTR ERVL 15 471 0 349 276 80 51 chr13 56193337 56193648 -63551250 + L1ME LINE L1 562 881 -5189 24 0 0 0 chr13 56193880 56193904 -63550994 + AT_rich Low_complexity Low_complexity 1 24 0 40 53 0 32 chr13 56194783 56194877 -63550021 + AT_rich Low_complexity Low_complexity 1 91 0 23 78 0 0 chr13 56196041 56196092 -63548806 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr13 56196509 56196542 -63548356 + AT_rich Low_complexity Low_complexity 1 33 0 588 297 39 68 chr13 56197536 56198056 -63546842 - MLT1F1 LTR MaLR 0 567 55 27 29 0 0 chr13 56198083 56198117 -63546781 + AT_rich Low_complexity Low_complexity 1 34 0 474 277 33 37 chr13 56198268 56198568 -63546330 + L1MC/D LINE L1 4767 5065 -1081 839 248 31 0 chr13 56198649 56198875 -63546023 + L1MC/D LINE L1 5569 5801 -2194 30 0 0 0 chr13 56200358 56200388 -63544510 + AT_rich Low_complexity Low_complexity 1 30 0 5645 139 70 100 chr13 56200512 56202808 -63542090 - L1PA13 LINE L1 -20 6143 3926 570 162 17 8 chr13 56202874 56202991 -63541907 - L1MA9 LINE L1 -6 6306 6189 24 53 0 0 chr13 56203111 56203149 -63541749 + AT_rich Low_complexity Low_complexity 1 38 0 7812 17 0 5 chr13 56203812 56205208 -63539690 - L1PA2 LINE L1 -1 6154 4762 28 29 0 0 chr13 56206405 56206440 -63538458 + AT_rich Low_complexity Low_complexity 1 35 0 2004 137 0 27 chr13 56207487 56207786 -63537112 - AluSx SINE Alu -21 291 1 267 320 20 26 chr13 56208079 56208232 -63536666 - L1MC/D LINE L1 -2069 5739 5588 344 330 103 39 chr13 56208650 56208980 -63535918 + MLT1H LTR MaLR 85 435 -114 2345 83 3 0 chr13 56209103 56209403 -63535495 + AluY SINE Alu 1 301 -10 25 0 0 0 chr13 56209444 56209469 -63535429 + AT_rich Low_complexity Low_complexity 1 25 0 25 83 0 0 chr13 56209529 56209589 -63535309 + AT_rich Low_complexity Low_complexity 1 60 0 26 30 0 0 chr13 56209672 56209705 -63535193 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr13 56210536 56210564 -63534334 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 56210710 56210732 -63534166 + AT_rich Low_complexity Low_complexity 1 22 0 1991 136 10 0 chr13 56211410 56211711 -63533187 + AluSx SINE Alu 1 304 -8 183 80 0 0 chr13 56212582 56212607 -63532291 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 222 333 159 26 chr13 56212660 56212855 -63532043 - MIR SINE MIR -3 259 39 243 0 0 0 chr13 56213766 56213793 -63531105 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 78 0 0 chr13 56213829 56213880 -63531018 + AT_rich Low_complexity Low_complexity 1 51 0 9453 219 119 31 chr13 56214600 56214770 -63530128 + L1MA4A LINE L1 106 260 -6589 2225 79 0 0 chr13 56214770 56215070 -63529828 + AluSc SINE Alu 1 300 0 9453 219 119 31 chr13 56215070 56217383 -63527515 + L1MA4A LINE L1 260 2809 -4040 10963 229 19 13 chr13 56217393 56220299 -63524599 + L1MA4A LINE L1 2954 5878 -970 3714 215 37 34 chr13 56220288 56221310 -63523588 + L1P LINE L1 3062 4086 -2060 * 16380 115 9 14 chr13 56221316 56223821 -63521077 + L1PA6 LINE L1 11 2502 -3644 45 55 0 0 chr13 56223844 56223917 -63520981 + AT_rich Low_complexity Low_complexity 1 73 0 21455 62 0 2 chr13 56223917 56227542 -63517356 + L1PA6 LINE L1 2527 6154 0 1937 234 86 2 chr13 56227542 56228042 -63516856 + L1P LINE L1 4068 4609 -1537 754 220 6 6 chr13 56228042 56228210 -63516688 + L1PA15 LINE L1 5998 6165 0 25 0 0 0 chr13 56228212 56228237 -63516661 + AT_rich Low_complexity Low_complexity 1 25 0 4845 155 94 6 chr13 56228237 56229304 -63515594 + L1MA4A LINE L1 5854 6998 -7 228 200 0 0 chr13 56229549 56229599 -63515299 + (TG)n Simple_repeat Simple_repeat 1 50 0 7470 28 5 1 chr13 56230130 56231728 -63513170 - L1PA3 LINE L1 -3 6152 4559 4473 21 0 0 chr13 56231728 56232251 -63512647 + L1PA3 LINE L1 4014 4536 -1610 4988 229 30 8 chr13 56232557 56233671 -63511227 + L1M1 LINE L1 10 1147 -6418 6340 138 22 20 chr13 56233675 56235269 -63509629 + L1MA1 LINE L1 4706 6300 -2 1819 193 71 53 chr13 56235295 56235746 -63509152 + L1MD2 LINE L1 5444 5902 -457 26 30 0 0 chr13 56235944 56235977 -63508921 + AT_rich Low_complexity Low_complexity 1 33 0 264 328 135 13 chr13 56236124 56236353 -63508545 + L2 LINE L2 3054 3310 -3 363 303 97 26 chr13 56236367 56236562 -63508336 - L3 LINE CR1 -297 1280 1072 2189 102 10 0 chr13 56238878 56239181 -63505717 + AluSp SINE Alu 1 306 -7 22 35 0 0 chr13 56239326 56239355 -63505543 + AT_rich Low_complexity Low_complexity 1 29 0 200 308 215 0 chr13 56239394 56239459 -63505439 + L2 LINE L2 3169 3247 -25 * 222 200 0 0 chr13 56239425 56239460 -63505438 + MIR SINE MIR 210 244 -18 840 265 65 18 chr13 56239463 56239799 -63505099 - L1MD3 LINE L1 -1 7994 7643 498 328 17 0 chr13 56239807 56239984 -63504914 - L1MD3 LINE L1 -412 7583 7404 357 253 0 21 chr13 56239985 56240080 -63504818 - MLT1F1 LTR MaLR -443 124 32 696 263 19 5 chr13 56240088 56240297 -63504601 - L1MD3 LINE L1 -696 7299 7088 1037 292 59 29 chr13 56240332 56241053 -63503845 - L1MC4a LINE L1 -1181 6627 5833 1846 150 142 18 chr13 56241053 56241434 -63503464 + MSTA LTR MaLR 1 428 0 1037 292 59 29 chr13 56241434 56241796 -63503102 - L1MC4a LINE L1 -1975 5833 5483 10905 239 22 23 chr13 56241841 56245305 -63499593 + L1P4 LINE L1 2087 5542 -624 204 356 55 0 chr13 56245540 56245613 -63499285 - L2 LINE L2 -9 3304 3228 2159 95 0 26 chr13 56246260 56246566 -63498332 - AluSq SINE Alu -13 300 3 274 281 56 12 chr13 56246617 56246777 -63498121 - L1MC4a LINE L1 -1538 4608 4442 26 30 0 0 chr13 56246822 56246855 -63498043 + AT_rich Low_complexity Low_complexity 1 33 0 631 273 57 120 chr13 56247045 56247605 -63497293 - L1MC4a LINE L1 -1970 4176 3652 4134 181 29 19 chr13 56247712 56248022 -63496876 - L1MC1 LINE L1 -56 6277 5971 2271 108 0 0 chr13 56248022 56248327 -63496571 - AluY SINE Alu -4 307 3 4134 181 29 19 chr13 56248327 56248852 -63496046 - L1MC1 LINE L1 -362 5971 5434 26 82 0 0 chr13 56249133 56249194 -63495704 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr13 56249262 56249284 -63495614 + AT_rich Low_complexity Low_complexity 1 22 0 330 26 0 0 chr13 56249859 56249898 -63495000 + (TG)n Simple_repeat Simple_repeat 1 39 0 6961 135 87 100 chr13 56250555 56252277 -63492621 - pTR5 LTR ERV1 0 2438 740 2373 288 99 41 chr13 56252369 56253962 -63490936 + L1MEc LINE L1 37 1721 -4675 * 4128 102 51 5 chr13 56253956 56254586 -63490312 - L1PA7 LINE L1 -1303 4843 4185 6641 76 10 0 chr13 56254586 56255862 -63489036 + L1PA7 LINE L1 4858 6143 -11 230 241 0 0 chr13 56255880 56255938 -63488960 + L1MEc LINE L1 1703 1760 -4636 664 233 36 22 chr13 56255994 56256217 -63488681 + L1MEc LINE L1 1864 2089 -4307 639 289 82 26 chr13 56256499 56256879 -63488019 - L1MCc LINE L1 -6006 417 17 * 1042 275 62 26 chr13 56256858 56257778 -63487120 - L1MCc LINE L1 -3637 3304 2387 351 0 0 0 chr13 56257882 56257921 -63486977 + (T)n Simple_repeat Simple_repeat 1 39 0 1199 273 134 27 chr13 56258155 56258987 -63485911 - L1MCc LINE L1 -4892 1531 831 183 80 0 0 chr13 56259379 56259404 -63485494 + (TC)n Simple_repeat Simple_repeat 1 25 0 555 133 83 61 chr13 56259634 56259815 -63485083 - HERVKC4 LTR ERVK -2414 2848 2664 1932 128 0 0 chr13 56259824 56260098 -63484800 + AluSx SINE Alu 25 298 -14 530 296 66 64 chr13 56260124 56260636 -63484262 + MLT1F1 LTR MaLR 69 564 -3 25 75 0 0 chr13 56262233 56262286 -63482612 + AT_rich Low_complexity Low_complexity 1 53 0 394 352 102 0 chr13 56262432 56262608 -63482290 + MIR SINE MIR 53 246 -16 624 288 58 35 chr13 56262611 56262837 -63482061 + MIR SINE MIR 28 258 -4 21 0 0 0 chr13 56262839 56262860 -63482038 + AT_rich Low_complexity Low_complexity 1 21 0 1572 208 64 124 chr13 56263117 56263756 -63481142 - MER77 LTR ERV1 0 605 5 23 33 0 0 chr13 56263770 56263800 -63481098 + AT_rich Low_complexity Low_complexity 1 30 0 1323 227 97 3 chr13 56263801 56264153 -63480745 - L1MA4 LINE L1 -7 6293 5909 22 0 0 0 chr13 56264851 56264873 -63480025 + AT_rich Low_complexity Low_complexity 1 22 0 2804 3 0 0 chr13 56266349 56266654 -63478244 - AluYa5 SINE Alu -6 305 1 1130 162 0 0 chr13 56266710 56266895 -63478003 + AluSx SINE Alu 1 185 -127 1108 176 0 0 chr13 56266939 56267127 -63477771 - AluJ SINE Alu -21 291 104 281 294 41 46 chr13 56267621 56267818 -63477080 + HAL1 LINE L1 2288 2483 -24 378 262 78 7 chr13 56268066 56268207 -63476691 - MER58 DNA MER1_type -3 2417 2267 3047 258 53 35 chr13 56268265 56270013 -63474885 - L1M4c LINE L1 -4488 2158 348 403 250 44 19 chr13 56270073 56270233 -63474665 - L1M4c LINE L1 -6376 166 3 532 243 9 0 chr13 56270810 56270921 -63473977 - AluJ SINE Alu -186 116 5 21 0 0 0 chr13 56271088 56271109 -63473789 + AT_rich Low_complexity Low_complexity 1 21 0 285 87 0 0 chr13 56271269 56271315 -63473583 - L1PA6 LINE L1 -2 6152 6107 797 192 7 120 chr13 56271768 56272059 -63472839 - L1M4 LINE L1 -5425 1117 860 293 240 0 19 chr13 56272275 56272379 -63472519 - HAL1 LINE L1 -305 2202 2101 411 258 75 32 chr13 56272512 56272698 -63472200 - HAL1 LINE L1 -629 1878 1685 24 32 0 0 chr13 56272992 56273023 -63471875 + AT_rich Low_complexity Low_complexity 1 31 0 255 215 0 0 chr13 56273045 56273110 -63471788 + CT-rich Low_complexity Low_complexity 2 66 0 440 284 90 22 chr13 56273110 56273378 -63471520 - HAL1 LINE L1 -1042 1465 1180 29 47 0 0 chr13 56273476 56273519 -63471379 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr13 56273794 56273820 -63471078 + AT_rich Low_complexity Low_complexity 1 26 0 321 327 111 25 chr13 56273934 56274096 -63470802 - HAL1 LINE L1 -1909 598 423 896 261 134 43 chr13 56274100 56274563 -63470335 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr13 56279683 56279704 -63465194 + AT_rich Low_complexity Low_complexity 1 21 0 287 364 45 0 chr13 56280931 56281085 -63463813 + L2 LINE L2 1527 1687 -1627 297 336 128 13 chr13 56281279 56281505 -63463393 + L2 LINE L2 1706 1957 -1357 928 238 30 30 chr13 56281507 56281738 -63463160 + L1M1 LINE L1 251 481 -7084 * 1705 161 18 12 chr13 56281731 56282066 -63462832 + L1M1 LINE L1 2980 3316 -4249 4229 124 12 4 chr13 56282066 56282757 -63462141 + L1MA2 LINE L1 5609 6304 0 359 278 98 20 chr13 56283065 56283320 -63461578 - L1M4 LINE L1 -1673 4473 4199 275 0 0 28 chr13 56283815 56283851 -63461047 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1679 136 43 0 chr13 56283854 56284112 -63460786 - AluSx SINE Alu -43 269 1 43 35 0 0 chr13 56284365 56284422 -63460476 + AT_rich Low_complexity Low_complexity 1 57 0 437 311 104 45 chr13 56284519 56284991 -63459907 - L1M4 LINE L1 -2966 3180 2681 22 88 0 0 chr13 56285325 56285382 -63459516 + AT_rich Low_complexity Low_complexity 1 57 0 1422 207 19 7 chr13 56285855 56286125 -63458773 + MER74C LTR ERVL 1 273 -187 840 260 15 0 chr13 56286165 56286361 -63458537 + MER74C LTR ERVL 262 460 0 2269 206 58 16 chr13 56286361 56286992 -63457906 + HERVL74 LTR ERVL 1 725 -4960 4075 185 34 26 chr13 56286992 56287798 -63457100 + HERVL74 LTR ERVL 2594 3405 -2280 3252 199 39 21 chr13 56287791 56288518 -63456380 + HERVL74 LTR ERVL 3564 4303 -1382 * 22 0 0 0 chr13 56288949 56288971 -63455927 + AT_rich Low_complexity Low_complexity 1 22 0 1751 160 10 13 chr13 56290298 56290598 -63454300 + AluSx SINE Alu 1 299 -13 923 159 61 0 chr13 56291207 56291370 -63453528 + THE1C LTR MaLR 28 200 -175 266 228 0 98 chr13 56291553 56291645 -63453253 + MER5B DNA MER1_type 76 158 -20 1894 141 70 17 chr13 56291858 56292213 -63452685 + THE1C LTR MaLR 1 374 -1 261 0 0 0 chr13 56292832 56292861 -63452037 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1326 211 19 88 chr13 56292886 56293260 -63451638 + MLT1A1 LTR MaLR 11 358 -7 229 366 36 27 chr13 56293357 56293578 -63451320 - MLT1J LTR MaLR -43 468 246 365 0 0 22 chr13 56293595 56293641 -63451257 + (TA)n Simple_repeat Simple_repeat 1 45 0 1784 122 0 85 chr13 56293667 56293986 -63450912 - AluSx SINE Alu -18 294 3 188 273 0 36 chr13 56294837 56294892 -63450006 + L2 LINE L2 1215 1267 -2047 21 0 0 0 chr13 56294894 56294915 -63449983 + AT_rich Low_complexity Low_complexity 1 21 0 198 373 80 20 chr13 56295007 56295157 -63449741 + L2 LINE L2 1396 1554 -1760 1573 152 48 24 chr13 56295247 56295583 -63449315 + L1MA8 LINE L1 5943 6286 -5 239 415 42 4 chr13 56295679 56295920 -63448978 + L2 LINE L2 1755 2004 -1310 3364 257 51 15 chr13 56295920 56297955 -63446943 - L1MB8 LINE L1 -6 6172 4066 261 211 0 0 chr13 56298036 56298093 -63446805 + (TG)n Simple_repeat Simple_repeat 2 58 0 271 307 0 0 chr13 56298095 56298183 -63446715 - L1MC4 LINE L1 -1340 6702 6615 226 283 0 22 chr13 56298166 56298258 -63446640 + L1MC4 LINE L1 6614 6703 -1339 * 269 323 193 39 chr13 56298261 56298825 -63446073 + L2 LINE L2 2096 2746 -568 30 27 0 0 chr13 56298893 56298930 -63445968 + AT_rich Low_complexity Low_complexity 1 37 0 561 258 39 64 chr13 56298931 56299261 -63445637 - L1MC4 LINE L1 -24 8018 7697 253 374 140 0 chr13 56300318 56300497 -63444401 - L3b LINE CR1 -55 1528 1325 211 277 12 24 chr13 56300914 56300997 -63443901 + (TA)n Simple_repeat Simple_repeat 1 82 0 29 60 0 0 chr13 56301027 56301077 -63443821 + AT_rich Low_complexity Low_complexity 1 50 0 50 65 0 0 chr13 56301770 56301862 -63443036 + AT_rich Low_complexity Low_complexity 1 92 0 3087 183 38 8 chr13 56302069 56302720 -63442178 + L1MB1 LINE L1 5515 6185 -4 263 280 32 0 chr13 56303228 56303321 -63441577 - MLT1J2 LTR MaLR -303 147 52 567 228 112 53 chr13 56303523 56303729 -63441169 + MER58A DNA MER1_type 1 218 -6 272 233 0 107 chr13 56304095 56304198 -63440700 - MLT1I LTR MaLR -38 371 280 440 342 19 6 chr13 56304256 56304414 -63440484 - MLT1I LTR MaLR -140 269 110 267 220 5 58 chr13 56305329 56305437 -63439461 - MLT1J2 LTR MaLR -315 196 73 281 98 0 20 chr13 56305671 56305722 -63439176 + (TA)n Simple_repeat Simple_repeat 2 51 0 364 265 28 77 chr13 56305779 56305960 -63438938 + AluSg/x SINE Alu 131 302 0 2939 140 32 4 chr13 56306366 56306831 -63438067 + MER1A DNA MER1_type 52 529 0 242 226 17 0 chr13 56307821 56307888 -63437010 - L1ME2 LINE L1 -3 6159 6092 276 30 0 0 chr13 56307888 56307921 -63436977 + (CA)n Simple_repeat Simple_repeat 2 34 0 910 295 73 36 chr13 56308191 56308835 -63436063 - L1MEc LINE L1 -4602 1794 1127 21 71 0 0 chr13 56310099 56310141 -63434757 + AT_rich Low_complexity Low_complexity 1 42 0 27 92 0 0 chr13 56310713 56310789 -63434109 + AT_rich Low_complexity Low_complexity 1 76 0 1417 314 112 28 chr13 56310875 56311900 -63432998 - L2 LINE L2 -18 3295 2182 623 289 127 3 chr13 56311912 56312227 -63432671 + L1ME1 LINE L1 5756 6109 -57 32 67 0 0 chr13 56312357 56312417 -63432481 + AT_rich Low_complexity Low_complexity 1 60 0 21 82 0 0 chr13 56312543 56312592 -63432306 + AT_rich Low_complexity Low_complexity 1 49 0 673 278 85 67 chr13 56313779 56314462 -63430436 + L1ME2 LINE L1 599 1202 -5003 4917 182 54 24 chr13 56314491 56315656 -63429242 + L1MC1 LINE L1 5122 6315 -18 542 301 62 39 chr13 56315668 56316053 -63428845 + L1ME2 LINE L1 1245 1638 -4577 240 185 0 0 chr13 56316053 56316107 -63428791 + (CATA)n Simple_repeat Simple_repeat 2 55 0 225 0 0 0 chr13 56316147 56316172 -63428726 + (T)n Simple_repeat Simple_repeat 1 25 0 1082 303 76 40 chr13 56316209 56317643 -63427255 + L1ME2 LINE L1 1699 3155 -3060 1699 264 98 22 chr13 56317693 56318501 -63426397 + L1ME2 LINE L1 5365 6233 0 204 161 48 16 chr13 56318509 56318571 -63426327 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 1101 135 41 86 chr13 56318819 56318990 -63425908 + Tigger7 DNA MER2_type 2237 2414 -77 324 0 0 0 chr13 56318990 56319026 -63425872 + (TG)n Simple_repeat Simple_repeat 2 37 0 225 0 0 0 chr13 56319025 56319050 -63425848 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1101 135 41 86 chr13 56319026 56319145 -63425753 + Tigger7 DNA MER2_type 2414 2491 0 568 340 59 31 chr13 56320507 56320863 -63424035 - L1MCc LINE L1 -4946 1997 1632 662 232 72 57 chr13 56320876 56321156 -63423742 - L1MCc LINE L1 -4899 1524 1282 242 414 44 20 chr13 56321156 56321359 -63423539 - L2 LINE L2 -374 2940 2733 332 425 18 4 chr13 56321449 56321677 -63423221 + MER115 DNA AcHobo 23 253 -440 860 325 40 27 chr13 56322090 56322465 -63422433 - L2 LINE L2 -1076 2238 1859 1788 149 60 41 chr13 56322757 56323125 -63421773 + THE1C LTR MaLR 1 375 0 459 276 78 12 chr13 56323187 56323520 -63421378 - L1M4 LINE L1 -2587 4370 4016 328 271 37 17 chr13 56323895 56324065 -63420833 - L1M4 LINE L1 -6357 498 101 26 64 0 0 chr13 56324654 56324701 -63420197 + AT_rich Low_complexity Low_complexity 1 47 0 1710 120 12 100 chr13 56324802 56325143 -63419755 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr13 56325196 56325220 -63419678 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 56326221 56326250 -63418648 + AT_rich Low_complexity Low_complexity 1 29 0 207 98 49 24 chr13 56326507 56326548 -63418350 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 3571 140 69 46 chr13 56328005 56328944 -63415954 + pTR5 LTR ERV1 735 2028 -410 332 151 57 85 chr13 56328945 56329033 -63415865 + LTR30 LTR ERV1 229 302 -75 1289 115 65 5 chr13 56329033 56329233 -63415665 + LTR12 LTR ERV1 370 581 -133 412 374 53 0 chr13 56329260 56329522 -63415376 + LTR16B LTR ERVL 185 460 -4 568 359 0 15 chr13 56330413 56330608 -63414290 + HERV16 LTR ERVL 1253 1444 -3552 405 299 76 12 chr13 56330842 56331144 -63413754 + HERV16 LTR ERVL 2422 2742 -2743 243 198 94 31 chr13 56331174 56331270 -63413628 + L1M4 LINE L1 4327 4428 -1718 2159 66 0 14 chr13 56331301 56331614 -63413284 - AluY SINE Alu 0 309 1 2151 117 0 3 chr13 56331827 56332125 -63412773 + AluSx SINE Alu 2 298 -14 332 215 61 68 chr13 56332589 56332752 -63412146 + MER104 DNA Tc2 14 175 -5 438 95 81 0 chr13 56334121 56334195 -63410703 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr13 56334588 56334616 -63410282 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 56335237 56335265 -63409633 + AT_rich Low_complexity Low_complexity 1 28 0 709 181 17 17 chr13 56335265 56335442 -63409456 - L1MA1 LINE L1 0 6302 6126 930 317 162 31 chr13 56335621 56336293 -63408605 + L2 LINE L2 1406 2165 -1149 5691 109 8 2 chr13 56336322 56337167 -63407731 - L1PB1 LINE L1 0 6151 5302 6582 159 10 51 chr13 56337169 56337778 -63407120 - L1M1 LINE L1 -743 6822 6189 303 132 19 0 chr13 56337778 56337831 -63407067 + MADE1 DNA Mariner 2 55 -25 6582 159 10 51 chr13 56337831 56338732 -63406166 - L1M1 LINE L1 -1376 6189 5410 11166 189 88 35 chr13 56338733 56341078 -63403820 - L1M1 LINE L1 -5087 2478 10 2044 201 77 64 chr13 56341169 56341652 -63403246 + MLT2B3 LTR ERVL 1 493 -61 194 0 39 0 chr13 56341652 56341678 -63403220 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 2044 201 77 64 chr13 56341678 56341741 -63403157 + MLT2B3 LTR ERVL 493 554 0 21 0 0 0 chr13 56341998 56342019 -63402879 + AT_rich Low_complexity Low_complexity 1 21 0 2145 125 0 0 chr13 56342029 56342324 -63402574 + AluSx SINE Alu 1 295 -17 2023 111 0 0 chr13 56343472 56343774 -63401124 - AluSg SINE Alu 0 302 1 470 248 0 9 chr13 56345351 56345464 -63399434 - MER5A DNA MER1_type -76 113 2 559 288 38 38 chr13 56345582 56345794 -63399104 + MIR SINE MIR 41 252 -10 1779 153 0 13 chr13 56345794 56346094 -63398804 + AluSx SINE Alu 1 296 -16 1363 182 40 4 chr13 56347204 56347457 -63397441 - Tigger5 DNA MER2_type -8 2315 2054 3163 134 35 14 chr13 56347457 56347949 -63396949 - MER1A DNA MER1_type 0 529 28 6664 233 76 42 chr13 56347991 56349968 -63394930 - Tigger5 DNA MER2_type -261 2062 20 9372 41 1 0 chr13 56351264 56353181 -63391717 - L1PA5 LINE L1 -3 6151 4233 26 30 0 0 chr13 56353582 56353615 -63391283 + AT_rich Low_complexity Low_complexity 1 33 0 489 34 0 0 chr13 56354826 56354885 -63390013 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 9048 194 28 2 chr13 56355224 56357649 -63387249 + L1PB1 LINE L1 3309 5788 -363 235 236 11 11 chr13 56357666 56357755 -63387143 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 409 210 0 0 chr13 56357758 56357839 -63387059 + L1 LINE L1 4511 4591 -1555 198 0 0 0 chr13 56357862 56357884 -63387014 + (TA)n Simple_repeat Simple_repeat 2 23 0 2391 120 6 0 chr13 56357884 56358241 -63386657 + L1PB1 LINE L1 5793 6151 0 22 0 0 0 chr13 56358297 56358319 -63386579 + AT_rich Low_complexity Low_complexity 1 22 0 3622 155 33 14 chr13 56358323 56358986 -63385912 - L1PB3 LINE L1 -3 6867 6192 230 0 33 0 chr13 56359010 56359040 -63385858 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1743 75 0 0 chr13 56359040 56359267 -63385631 - L1PA7 LINE L1 -13 6141 5915 12647 217 22 24 chr13 56359268 56363498 -63381400 - L1PB3 LINE L1 -671 6196 1919 1879 139 0 38 chr13 56363557 56363874 -63381024 + AluSx SINE Alu 1 305 -7 229 333 129 0 chr13 56364127 56364259 -63380639 - MIR SINE MIR -49 213 65 5890 242 32 26 chr13 56364329 56367180 -63377718 - L1PB3 LINE L1 -4937 1926 3 427 92 0 15 chr13 56367285 56367350 -63377548 + L1PA10 LINE L1 6100 6163 -5 4106 116 20 2 chr13 56367371 56367977 -63376921 + L1PA11 LINE L1 5558 6174 0 2843 223 67 12 chr13 56368873 56369050 -63375848 - L1MB7 LINE L1 -16 6168 6002 2132 161 20 54 chr13 56369050 56369497 -63375401 + MSTB1 LTR MaLR 1 432 0 2843 223 67 12 chr13 56369497 56370083 -63374815 - L1MB7 LINE L1 -182 6002 5363 3433 250 96 73 chr13 56370084 56372207 -63372691 - L1MB7 LINE L1 -1356 4790 2620 1419 95 0 62 chr13 56372209 56372444 -63372454 - AluSq SINE Alu 0 306 85 1314 272 58 41 chr13 56372517 56372803 -63372095 - L1M4c LINE L1 -4585 1797 1517 2308 66 0 3 chr13 56372803 56373090 -63371808 - AluY SINE Alu -17 294 9 1314 272 58 41 chr13 56373090 56373594 -63371304 - L1M4c LINE L1 -4865 1517 907 39 50 0 0 chr13 56373787 56373847 -63371051 + AT_rich Low_complexity Low_complexity 1 60 0 1015 216 14 19 chr13 56373911 56374124 -63370774 + AluJo SINE Alu 7 218 -94 234 0 0 0 chr13 56374158 56374184 -63370714 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 181 382 130 8 chr13 56375412 56375650 -63369248 - L2 LINE L2 -1607 1707 1441 461 166 58 29 chr13 56376387 56376526 -63368372 - L1M4 LINE L1 -5477 1065 923 2228 249 17 2 chr13 56376526 56377004 -63367894 + Tigger7 DNA MER2_type 1 485 -248 438 211 0 0 chr13 56377010 56377086 -63367812 + Tigger7 DNA MER2_type 2397 2472 -15 2630 258 42 63 chr13 56377091 56378016 -63366882 - L1M4 LINE L1 -5636 906 1 231 36 0 0 chr13 56378197 56378225 -63366673 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 104 0 0 chr13 56378556 56378633 -63366265 + AT_rich Low_complexity Low_complexity 1 77 0 24 32 0 0 chr13 56378803 56378834 -63366064 + AT_rich Low_complexity Low_complexity 1 31 0 252 368 59 13 chr13 56379422 56379661 -63365237 - L1MC/D LINE L1 -1981 5827 5578 537 341 127 28 chr13 56379988 56380524 -63364374 - HAL1 LINE L1 -850 1657 1069 222 121 35 17 chr13 56380712 56380770 -63364128 + (TA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr13 56382141 56382169 -63362729 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr13 56382246 56382289 -63362609 + AT_rich Low_complexity Low_complexity 1 43 0 6297 189 29 11 chr13 56383521 56385690 -63359208 - L1PA15 LINE L1 -18 6147 3943 2179 202 76 18 chr13 56386039 56386550 -63358348 + L1MD1 LINE L1 5702 6242 0 4509 223 26 21 chr13 56386818 56386912 -63357986 + L1MB1 LINE L1 4161 4253 -1915 189 0 0 0 chr13 56386912 56386933 -63357965 + (CA)n Simple_repeat Simple_repeat 2 22 0 4509 223 26 21 chr13 56386933 56388136 -63356762 + L1MB1 LINE L1 4253 5466 -702 1168 246 71 9 chr13 56388140 56388309 -63356589 + MLT1A2 LTR MaLR 1 158 -216 342 0 0 0 chr13 56388309 56388347 -63356551 + (TC)n Simple_repeat Simple_repeat 2 39 0 1168 246 71 9 chr13 56388347 56388502 -63356396 + MLT1A2 LTR MaLR 158 345 -29 1003 195 37 45 chr13 56388514 56388760 -63356138 + L1MB1 LINE L1 5489 5732 -602 586 141 24 65 chr13 56388807 56388965 -63355933 + L1MB1 LINE L1 6021 6164 -7 2751 240 51 46 chr13 56388968 56389864 -63355034 + L1MD1 LINE L1 5328 6228 -14 253 302 10 52 chr13 56390544 56390640 -63354258 - MIR SINE MIR -98 110 19 1616 194 3 78 chr13 56390922 56391304 -63353594 - MLT1B LTR MaLR -35 355 3 33 56 0 0 chr13 56392658 56392712 -63352186 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr13 56392736 56392765 -63352133 + AT_rich Low_complexity Low_complexity 1 29 0 277 273 180 42 chr13 56392958 56393247 -63351651 + MER46C DNA MER2_type 2 330 -8 232 350 40 40 chr13 56393874 56394074 -63350824 + L2 LINE L2 3014 3213 -100 202 385 67 37 chr13 56394784 56394919 -63349979 + L2 LINE L2 3134 3272 0 216 0 0 0 chr13 56395566 56395590 -63349308 + (TA)n Simple_repeat Simple_repeat 1 24 0 28 0 0 0 chr13 56395741 56395769 -63349129 + AT_rich Low_complexity Low_complexity 1 28 0 5467 266 70 39 chr13 56396182 56396603 -63348295 - L1 LINE L1 -2010 5157 4750 315 0 0 0 chr13 56396603 56396638 -63348260 + (TG)n Simple_repeat Simple_repeat 1 35 0 5467 266 70 39 chr13 56396638 56399022 -63345876 - L1 LINE L1 -2417 4750 2463 2389 68 7 0 chr13 56399022 56399329 -63345569 - AluY SINE Alu -2 309 1 5467 266 70 39 chr13 56399329 56400998 -63343900 - L1 LINE L1 -4704 2463 847 316 298 177 14 chr13 56401141 56401282 -63343616 + MER5A DNA MER1_type 23 186 -3 309 383 78 0 chr13 56401459 56401639 -63343259 + L2 LINE L2 2377 2570 -744 2026 120 3 0 chr13 56402181 56402464 -63342434 + AluSx SINE Alu 1 284 -28 463 74 87 3 chr13 56402464 56402770 -63342128 + (TA)n Simple_repeat Simple_repeat 1 331 0 222 190 0 35 chr13 56403070 56403128 -63341770 + (TA)n Simple_repeat Simple_repeat 1 56 0 605 294 109 27 chr13 56404656 56404949 -63339949 - MLT1I LTR MaLR 0 409 93 385 275 81 34 chr13 56405803 56405952 -63338946 - MLT1H LTR MaLR -292 257 102 237 33 0 0 chr13 56406169 56406199 -63338699 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 214 0 0 chr13 56406209 56406251 -63338647 + GA-rich Low_complexity Low_complexity 2 43 0 26 0 0 0 chr13 56407731 56407757 -63337141 + AT_rich Low_complexity Low_complexity 1 26 0 180 360 35 0 chr13 56408192 56408278 -63336620 + MIR SINE MIR 93 181 -81 324 70 0 0 chr13 56408279 56408322 -63336576 + (TA)n Simple_repeat Simple_repeat 1 43 0 254 228 18 0 chr13 56408322 56408379 -63336519 + L1MD1 LINE L1 5930 5987 -255 289 222 172 10 chr13 56408389 56408488 -63336410 + L1MD1 LINE L1 5930 6044 -198 26 64 0 0 chr13 56409908 56409955 -63334943 + AT_rich Low_complexity Low_complexity 1 47 0 213 94 0 0 chr13 56410121 56410153 -63334745 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2595 182 29 11 chr13 56410174 56410775 -63334123 - L1MC/D LINE L1 -542 5791 5177 441 0 0 0 chr13 56410775 56410824 -63334074 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6494 76 5 0 chr13 56410824 56412310 -63332588 - L1PA7 LINE L1 -18 6451 4963 3979 80 24 0 chr13 56412310 56412851 -63332047 + L1PA7 LINE L1 5428 5981 -173 * 16174 108 10 10 chr13 56412850 56417331 -63327567 - L1PA7 LINE L1 -1972 4489 2 2770 262 53 14 chr13 56417331 56418353 -63326545 - L1MC/D LINE L1 -958 5188 4127 1151 209 17 20 chr13 56418356 56418653 -63326245 - L1 LINE L1 -1494 4967 4672 210 291 0 0 chr13 56418883 56418938 -63325960 + CT-rich Low_complexity Low_complexity 1 55 0 1297 113 48 9 chr13 56419465 56419694 -63325204 - L1PA12 LINE L1 -4734 2847 2610 1853 160 3 0 chr13 56420033 56420326 -63324572 + AluSx SINE Alu 1 294 -18 475 327 0 46 chr13 56420404 56420621 -63324277 + LTR16A1 LTR ERVL 249 455 -2 375 325 16 55 chr13 56421163 56421418 -63323480 + HERV16 LTR ERVL 910 1154 -3842 615 235 8 0 chr13 56421683 56421815 -63323083 - AluJb SINE Alu -179 133 1 2181 145 136 13 chr13 56421924 56422387 -63322511 - L1MA4A LINE L1 -2 6301 5781 23 86 0 0 chr13 56422542 56422600 -63322298 + AT_rich Low_complexity Low_complexity 1 58 0 484 300 27 0 chr13 56473645 56473795 -63271103 - MLT1E LTR MaLR -49 544 391 270 116 0 0 chr13 56473872 56473915 -63270983 + (TCCCC)n Simple_repeat Simple_repeat 5 47 0 1884 109 29 4 chr13 56473923 56474197 -63270701 - AluSq SINE Alu -32 281 1 2043 104 10 3 chr13 56475389 56475688 -63269210 - AluSx SINE Alu -9 303 3 1764 144 18 64 chr13 56475795 56476122 -63268776 + AluSx SINE Alu 1 312 0 7005 33 1 2 chr13 56476430 56477287 -63267611 - L1P LINE L1 -932 5214 4359 7094 26 4 0 chr13 56477287 56478127 -63266771 + L1PA4 LINE L1 5307 6150 -5 2232 143 110 7 chr13 56478129 56478547 -63266351 - MER57-int LTR ERV1 -3561 3976 3516 289 222 172 10 chr13 56479979 56480078 -63264820 - L1MD1 LINE L1 -198 6044 5930 254 228 18 0 chr13 56480088 56480145 -63264753 - L1MD1 LINE L1 -255 5987 5930 324 70 0 0 chr13 56480145 56480188 -63264710 + (TA)n Simple_repeat Simple_repeat 1 43 0 180 360 35 0 chr13 56480189 56480275 -63264623 - MIR SINE MIR -81 181 93 26 0 0 0 chr13 56480710 56480736 -63264162 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr13 56481376 56481405 -63263493 + AT_rich Low_complexity Low_complexity 1 29 0 215 214 0 0 chr13 56482216 56482258 -63262640 + CT-rich Low_complexity Low_complexity 2 43 0 237 33 0 0 chr13 56482268 56482298 -63262600 + (CA)n Simple_repeat Simple_repeat 1 30 0 385 275 81 34 chr13 56482515 56482664 -63262234 + MLT1H LTR MaLR 102 257 -292 605 294 109 27 chr13 56483518 56483811 -63261087 + MLT1I LTR MaLR 93 409 0 222 190 0 35 chr13 56485339 56485397 -63259501 + (TA)n Simple_repeat Simple_repeat 1 56 0 35 24 0 0 chr13 56485693 56485735 -63259163 + AT_rich Low_complexity Low_complexity 1 42 0 510 62 94 0 chr13 56485735 56485895 -63259003 + (TA)n Simple_repeat Simple_repeat 1 175 0 39 0 0 0 chr13 56485895 56485934 -63258964 + AT_rich Low_complexity Low_complexity 1 39 0 462 89 70 6 chr13 56485934 56486091 -63258807 + (TA)n Simple_repeat Simple_repeat 1 167 0 2026 120 3 0 chr13 56486091 56486374 -63258524 - AluSx SINE Alu -28 284 1 309 383 78 0 chr13 56486916 56487096 -63257802 - L2 LINE L2 -744 2570 2377 316 298 177 14 chr13 56487273 56487414 -63257484 - MER5A DNA MER1_type -3 186 23 5491 265 67 34 chr13 56487557 56489226 -63255672 + L1M2a LINE L1 847 2460 -4707 2406 68 7 0 chr13 56489226 56489535 -63255363 + AluY SINE Alu 1 311 0 5491 265 67 34 chr13 56489535 56491914 -63252984 + L1M2a LINE L1 2460 4751 -2416 279 0 0 0 chr13 56491914 56491945 -63252953 + (CA)n Simple_repeat Simple_repeat 1 31 0 5491 265 67 34 chr13 56491945 56492366 -63252532 + L1M2a LINE L1 4751 5157 -2010 28 0 0 0 chr13 56492779 56492807 -63252091 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr13 56492958 56492988 -63251910 + (TA)n Simple_repeat Simple_repeat 1 30 0 202 385 67 37 chr13 56493635 56493770 -63251128 - L2 LINE L2 0 3272 3134 232 350 40 40 chr13 56494480 56494680 -63250218 - L2 LINE L2 -100 3213 3014 277 273 180 42 chr13 56495307 56495596 -63249302 - MER46C DNA MER2_type -8 330 2 22 35 0 0 chr13 56495789 56495818 -63249080 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr13 56495842 56495896 -63249002 + AT_rich Low_complexity Low_complexity 1 54 0 1616 194 3 78 chr13 56497250 56497632 -63247266 + MLT1B LTR MaLR 3 355 -35 253 302 10 52 chr13 56497914 56498010 -63246888 + MIR SINE MIR 19 110 -98 2751 240 51 46 chr13 56498690 56499586 -63245312 - L1MD1 LINE L1 -14 6228 5328 586 141 24 65 chr13 56499589 56499747 -63245151 - L1MB1 LINE L1 -7 6164 6021 1003 195 37 45 chr13 56499794 56500040 -63244858 - L1MB1 LINE L1 -602 5732 5489 1168 246 71 9 chr13 56500052 56500207 -63244691 - MLT1A2 LTR MaLR -29 345 201 342 0 0 0 chr13 56500207 56500245 -63244653 + (GA)n Simple_repeat Simple_repeat 2 39 0 1168 246 71 9 chr13 56500245 56500414 -63244484 - MLT1A2 LTR MaLR -173 201 1 4509 223 26 21 chr13 56500418 56501621 -63243277 - L1MB1 LINE L1 -702 5466 4253 189 0 0 0 chr13 56501621 56501642 -63243256 + (TG)n Simple_repeat Simple_repeat 2 22 0 4509 223 26 21 chr13 56501642 56501736 -63243162 - L1MB1 LINE L1 -1915 4253 4161 2179 202 76 18 chr13 56502004 56502515 -63242383 - L1MD1 LINE L1 0 6242 5702 6353 189 29 11 chr13 56502864 56505034 -63239864 + L1PA15 LINE L1 3943 6147 -18 29 47 0 0 chr13 56506266 56506309 -63238589 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 56506386 56506414 -63238484 + AT_rich Low_complexity Low_complexity 1 28 0 222 121 35 17 chr13 56507785 56507843 -63237055 + (TA)n Simple_repeat Simple_repeat 1 59 0 537 341 127 28 chr13 56508031 56508567 -63236331 + HAL1 LINE L1 1069 1657 -850 252 368 59 13 chr13 56508894 56509133 -63235765 + L1MC/D LINE L1 5578 5827 -1981 24 32 0 0 chr13 56509721 56509752 -63235146 + AT_rich Low_complexity Low_complexity 1 31 0 21 104 0 0 chr13 56509922 56509999 -63234899 + AT_rich Low_complexity Low_complexity 1 77 0 231 36 0 0 chr13 56510330 56510358 -63234540 + (TG)n Simple_repeat Simple_repeat 1 28 0 2636 259 42 62 chr13 56510539 56511463 -63233435 + L1MB7 LINE L1 1 906 -5636 438 211 0 0 chr13 56511468 56511544 -63233354 - Tigger7 DNA MER2_type -15 2476 2401 2228 249 17 2 chr13 56511550 56512028 -63232870 - Tigger7 DNA MER2_type -248 485 1 2010 255 68 52 chr13 56512028 56512768 -63232130 + L1MB7 LINE L1 923 1779 -4865 2319 63 0 3 chr13 56512768 56513055 -63231843 + AluY SINE Alu 9 294 -17 2010 255 68 52 chr13 56513055 56513341 -63231557 + L1MB7 LINE L1 1779 2059 -4585 1420 95 0 62 chr13 56513414 56513649 -63231249 + AluSq SINE Alu 85 306 0 3413 248 97 74 chr13 56513651 56515774 -63229124 + L1MB7 LINE L1 3118 5288 -1356 2843 223 67 12 chr13 56515775 56516361 -63228537 + L1MB7 LINE L1 5861 6500 -182 2132 161 20 54 chr13 56516361 56516808 -63228090 - MSTB1 LTR MaLR 0 432 1 2843 223 67 12 chr13 56516808 56516985 -63227913 + L1MB7 LINE L1 6500 6666 -16 4106 116 20 2 chr13 56517881 56518487 -63226411 - L1PA11 LINE L1 0 6174 5558 347 85 0 146 chr13 56518489 56518571 -63226327 - L1PA7 LINE L1 0 6154 6085 5890 240 31 25 chr13 56518678 56521529 -63223369 + L1PB3 LINE L1 3 1926 -4937 229 333 129 0 chr13 56521599 56521731 -63223167 + MIR SINE MIR 65 213 -49 1885 139 0 35 chr13 56521984 56522300 -63222598 - AluSx SINE Alu -7 305 1 12643 214 22 29 chr13 56522359 56526600 -63218298 + L1PB3 LINE L1 1919 6199 -668 1744 75 0 0 chr13 56526600 56526855 -63218043 + L1PA7 LINE L1 5915 6171 0 3622 155 33 14 chr13 56526879 56527542 -63217356 + L1PB3 LINE L1 6192 6867 -3 22 0 0 0 chr13 56527546 56527568 -63217330 + AT_rich Low_complexity Low_complexity 1 22 0 2407 118 6 0 chr13 56527624 56527981 -63216917 - L1PB1 LINE L1 0 6151 5793 414 0 0 0 chr13 56527981 56528027 -63216871 + (TA)n Simple_repeat Simple_repeat 2 47 0 409 210 0 0 chr13 56528050 56528131 -63216767 - L1 LINE L1 -1555 4591 4511 309 307 20 0 chr13 56528131 56528232 -63216666 - L1MC4 LINE L1 -1336 6706 6604 9059 193 28 2 chr13 56528242 56530667 -63214231 - L1P5 LINE L1 -363 5788 3309 525 32 0 0 chr13 56531006 56531069 -63213829 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 26 30 0 0 chr13 56532276 56532309 -63212589 + AT_rich Low_complexity Low_complexity 1 33 0 9372 41 1 0 chr13 56532710 56534627 -63210271 + L1PA5 LINE L1 4233 6151 -3 6664 233 76 42 chr13 56535923 56537900 -63206998 + Tigger5 DNA MER2_type 20 2062 -261 3170 132 35 16 chr13 56537942 56538435 -63206463 + MER1A DNA MER1_type 28 529 0 1363 182 40 4 chr13 56538435 56538688 -63206210 + Tigger5 DNA MER2_type 2054 2315 -8 32 0 0 0 chr13 56539820 56539852 -63205046 + AT_rich Low_complexity Low_complexity 1 32 0 195 232 0 0 chr13 56540564 56540646 -63204252 + (TA)n Simple_repeat Simple_repeat 2 83 0 1080 203 107 38 chr13 56541001 56541366 -63203532 + MLT1B LTR MaLR 1 390 0 1841 238 100 38 chr13 56541405 56541965 -63202933 + MER76 LTR ERV 94 688 0 180 0 0 0 chr13 56542148 56542168 -63202730 + (TA)n Simple_repeat Simple_repeat 1 20 0 291 28 0 0 chr13 56542602 56542638 -63202260 + (CA)n Simple_repeat Simple_repeat 1 36 0 1906 159 120 26 chr13 56542650 56543041 -63201857 - MSTA LTR MaLR 0 428 1 8386 190 39 2 chr13 56543041 56544634 -63200264 - MSTA-int LTR MaLR 0 1651 1 1966 136 23 3 chr13 56544680 56544982 -63199916 + AluSx SINE Alu 3 310 -2 3839 200 34 12 chr13 56545023 56546542 -63198356 + L1PB4 LINE L1 4588 6149 -7 22 0 0 0 chr13 56547378 56547400 -63197498 + AT_rich Low_complexity Low_complexity 1 22 0 572 282 52 36 chr13 56548115 56548424 -63196474 - Charlie8 DNA MER1_type -1997 420 107 196 365 17 52 chr13 56548662 56548777 -63196121 - MIR SINE MIR -131 131 21 242 28 0 28 chr13 56549068 56549104 -63195794 + (TA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr13 56549103 56549124 -63195774 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 24 53 0 0 chr13 56550512 56550550 -63194348 + AT_rich Low_complexity Low_complexity 1 38 0 2085 24 0 4 chr13 56550838 56551090 -63193808 - L1PA4 LINE L1 0 6155 5905 304 85 0 4 chr13 56551090 56551131 -63193767 - L1P3 LINE L1 -399 5756 5725 21 82 0 0 chr13 56551429 56551478 -63193420 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 56551633 56551655 -63193243 + AT_rich Low_complexity Low_complexity 1 22 0 257 167 42 0 chr13 56552850 56552898 -63192000 + ERVL-F LTR ERVL 3775 3824 -1940 498 207 62 98 chr13 56552981 56553174 -63191724 + ERVL-F LTR ERVL 5562 5747 -17 397 286 21 36 chr13 56553174 56553314 -63191584 + MLT2F LTR ERVL 2 139 -524 389 236 15 146 chr13 56553318 56553517 -63191381 + MLT1E1 LTR MaLR 61 233 -391 375 223 43 36 chr13 56553711 56553850 -63191048 + ERVL LTR ERVL 2 141 -5623 1353 279 13 29 chr13 56553893 56554276 -63190622 + MLT1E1 LTR MaLR 278 654 0 2128 101 0 7 chr13 56554294 56554604 -63190294 - AluSq SINE Alu 0 309 2 348 317 35 7 chr13 56554741 56554883 -63190015 + MLT1J2 LTR MaLR 37 182 -268 224 109 0 43 chr13 56555314 56555360 -63189538 + (TTCTCC)n Simple_repeat Simple_repeat 5 48 0 293 296 33 37 chr13 56555363 56555740 -63189158 - L1MCb LINE L1 -4882 1163 1062 3698 236 59 17 chr13 56555752 56557836 -63187062 - L1MB7 LINE L1 -117 6067 3890 44 0 0 0 chr13 56557904 56557948 -63186950 + AT_rich Low_complexity Low_complexity 1 44 0 222 191 0 0 chr13 56559803 56559850 -63185048 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 28 71 0 0 chr13 56559989 56560045 -63184853 + AT_rich Low_complexity Low_complexity 1 56 0 1421 235 54 22 chr13 56560599 56561004 -63183894 - LTR52 LTR ERVL -3 418 1 998 185 5 33 chr13 56563329 56563513 -63181385 - MER20 DNA MER1_type -40 179 1 2264 110 0 0 chr13 56564526 56564827 -63180071 + AluY SINE Alu 1 301 -10 6736 83 1 4 chr13 56564835 56565955 -63178943 + L1PA8 LINE L1 5055 6172 0 24 0 0 0 chr13 56565955 56565979 -63178919 + AT_rich Low_complexity Low_complexity 1 24 0 2207 200 25 35 chr13 56567391 56567880 -63177018 - MER44D DNA MER2_type -3 602 64 397 335 70 22 chr13 56567939 56568124 -63176774 + MIR SINE MIR 19 212 -50 231 364 85 54 chr13 56570643 56570995 -63173903 + L2 LINE L2 255 617 -2697 25 51 0 0 chr13 56571061 56571100 -63173798 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chr13 56574229 56574262 -63170636 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr13 56574860 56574898 -63170000 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 56575114 56575142 -63169756 + AT_rich Low_complexity Low_complexity 1 28 0 835 224 25 5 chr13 56576536 56576737 -63168161 + MER3 DNA MER1_type 5 209 0 347 363 59 34 chr13 56576804 56577159 -63167739 - L2 LINE L2 -19 3294 2931 1328 304 71 34 chr13 56577164 56577730 -63167168 + MLT1E LTR MaLR 6 592 -1 480 340 69 49 chr13 56577768 56578174 -63166724 - L2 LINE L2 -459 2855 2442 397 95 0 27 chr13 56578199 56578273 -63166625 + (TTCCC)n Simple_repeat Simple_repeat 3 74 0 246 83 0 0 chr13 56578377 56578413 -63166485 + Alu SINE Alu 258 293 -9 245 341 102 28 chr13 56578878 56579054 -63165844 + MER5A DNA MER1_type 1 189 0 1454 191 11 11 chr13 56579524 56579797 -63165101 + AluJo SINE Alu 11 283 -29 261 0 0 0 chr13 56580018 56580047 -63164851 + (CA)n Simple_repeat Simple_repeat 2 30 0 3490 242 77 40 chr13 56582861 56585382 -63159516 - L1MD1 LINE L1 -12 6230 3635 24 32 0 0 chr13 56585485 56585516 -63159382 + AT_rich Low_complexity Low_complexity 1 31 0 32 67 0 0 chr13 56585584 56585644 -63159254 + AT_rich Low_complexity Low_complexity 1 60 0 912 210 126 68 chr13 56586197 56586506 -63158392 + MLT1A1 LTR MaLR 37 363 -2 238 312 35 55 chr13 56586529 56586728 -63158170 + L2 LINE L2 1858 2052 -1262 1007 168 23 37 chr13 56586824 56587038 -63157860 + L1MC3 LINE L1 5683 5893 -1892 2125 128 48 31 chr13 56587084 56587442 -63157456 + THE1B LTR MaLR 1 364 0 10120 110 4 1 chr13 56587442 56588846 -63156052 + THE1B-int LTR MaLR 1 1408 -172 606 307 148 43 chr13 56588852 56589600 -63155298 + L2 LINE L2 2461 3313 0 1711 174 0 0 chr13 56589984 56590249 -63154649 - AluSx SINE Alu -47 265 1 36 23 0 0 chr13 56590286 56590329 -63154569 + AT_rich Low_complexity Low_complexity 1 43 0 248 83 0 0 chr13 56590622 56590658 -63154240 - HSMAR1 DNA Mariner -1251 36 1 414 0 0 0 chr13 56590796 56590842 -63154056 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 276 173 39 chr13 56590929 56591085 -63153813 + L2 LINE L2 3133 3309 -4 964 106 0 183 chr13 56591086 56591321 -63153577 - 7SK RNA RNA 0 193 2 1624 231 153 52 chr13 56591761 56592498 -63152400 + LTR1B LTR ERV1 15 826 0 224 204 0 0 chr13 56592565 56592609 -63152289 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 233 128 23 chr13 56593262 56593348 -63151550 - L2 LINE L2 0 3272 3178 1439 173 42 48 chr13 56593371 56593660 -63151238 - AluSg1 SINE Alu -22 287 1 24 53 0 0 chr13 56593967 56594005 -63150893 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr13 56594288 56594315 -63150583 + AT_rich Low_complexity Low_complexity 1 27 0 319 301 53 26 chr13 56595088 56595201 -63149697 + MIR SINE MIR 130 245 -17 448 320 66 20 chr13 56595224 56595468 -63149430 + MIR SINE MIR 8 262 0 234 333 34 45 chr13 56595943 56596120 -63148778 - L1ME3A LINE L1 -109 6061 5887 2234 107 7 0 chr13 56596123 56596421 -63148477 - AluSx SINE Alu -7 305 6 23 0 0 0 chr13 56597373 56597396 -63147502 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 56597626 56597647 -63147251 + AT_rich Low_complexity Low_complexity 1 21 0 1995 239 31 55 chr13 56598964 56599614 -63145284 + MER76 LTR ERV 1 634 -54 1664 126 15 30 chr13 56599638 56599907 -63144991 - MER50 LTR ERV1 -37 697 433 1386 135 17 4 chr13 56599896 56600126 -63144772 - MER50 LTR ERV1 -501 233 1 * 21 36 0 0 chr13 56602170 56602198 -63142700 + AT_rich Low_complexity Low_complexity 1 28 0 193 182 15 15 chr13 56602332 56602398 -63142500 + (TA)n Simple_repeat Simple_repeat 1 66 0 444 324 33 11 chr13 56603386 56603568 -63141330 + MIR SINE MIR 66 251 -11 313 299 176 49 chr13 56603744 56604152 -63140746 + L1ME4a LINE L1 5536 5995 -126 245 219 85 12 chr13 56604479 56604561 -63140337 + MIR SINE MIR 99 186 -76 2073 143 3 0 chr13 56604578 56604926 -63139972 + AluSx SINE Alu 3 351 0 273 310 39 64 chr13 56605019 56605222 -63139676 - MIR SINE MIR -1 261 64 3145 181 46 25 chr13 56605604 56606239 -63138659 - L1MB3 LINE L1 -36 6147 5500 7486 133 131 37 chr13 56606239 56607791 -63137107 + pTR5 LTR ERV1 742 2438 0 851 190 42 59 chr13 56607799 56607962 -63136936 - L1MB3 LINE L1 -688 5492 5328 1805 111 40 34 chr13 56607962 56608259 -63136639 - AluY SINE Alu -10 301 3 851 190 42 59 chr13 56608259 56608496 -63136402 - L1MB3 LINE L1 -852 5328 5092 335 212 0 59 chr13 56608500 56608607 -63136291 - L1M4 LINE L1 -3856 2526 2426 26 30 0 0 chr13 56609025 56609058 -63135840 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 56610666 56610687 -63134211 + AT_rich Low_complexity Low_complexity 1 21 0 271 289 167 33 chr13 56611012 56611192 -63133706 - MIR SINE MIR -1 261 58 180 388 67 29 chr13 56611460 56611501 -63133397 + MIR SINE MIR 11 49 -213 821 269 14 0 chr13 56611501 56611717 -63133181 + MER20 DNA MER1_type 1 219 0 180 388 67 29 chr13 56611717 56611915 -63132983 + MIR SINE MIR 49 259 -3 41 48 0 0 chr13 56612070 56612132 -63132766 + AT_rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr13 56612326 56612349 -63132549 + AT_rich Low_complexity Low_complexity 1 23 0 257 278 0 0 chr13 56612480 56612552 -63132346 + (TATG)n Simple_repeat Simple_repeat 3 74 0 25 65 0 0 chr13 56613001 56613047 -63131851 + AT_rich Low_complexity Low_complexity 1 46 0 1226 201 4 4 chr13 56614206 56614445 -63130453 + L1PA16 LINE L1 5912 6150 -16 1264 199 33 52 chr13 56615073 56615511 -63129387 + MER52A LTR ERV1 664 1230 -525 295 296 52 35 chr13 56615547 56615662 -63129236 + MER52A LTR ERV1 1232 1348 -407 * 391 266 6 51 chr13 56615636 56615794 -63129104 + LTR28 LTR ERV1 572 722 -298 1813 223 0 40 chr13 56615957 56616379 -63128519 + MER52A LTR ERV1 1351 1755 0 392 66 0 16 chr13 56616379 56616440 -63128458 + (TA)n Simple_repeat Simple_repeat 1 60 0 242 182 0 91 chr13 56616440 56616550 -63128348 - L1MC4 LINE L1 -1333 6709 6610 22 56 0 0 chr13 56616720 56616756 -63128142 + AT_rich Low_complexity Low_complexity 1 36 0 2133 121 3 0 chr13 56616870 56617168 -63127730 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr13 56618653 56618678 -63126220 + AT_rich Low_complexity Low_complexity 1 25 0 2178 113 0 0 chr13 56619533 56619825 -63125073 + AluSc SINE Alu 1 292 -17 1984 172 105 0 chr13 56620376 56620765 -63124133 - MSTB1 LTR MaLR -2 430 1 1854 162 0 0 chr13 56620950 56621264 -63123634 + L1 LINE L1 4875 5188 -958 23 0 0 0 chr13 56622369 56622392 -63122506 + AT_rich Low_complexity Low_complexity 1 23 0 2972 147 143 22 chr13 56622998 56623629 -63121269 + MER39 LTR ERV1 1 707 0 49 76 0 0 chr13 56623817 56623922 -63120976 + AT_rich Low_complexity Low_complexity 1 105 0 2334 87 3 6 chr13 56624280 56624592 -63120306 + AluSx SINE Alu 1 311 -1 231 303 14 32 chr13 56624990 56625208 -63119690 - L1M4 LINE L1 -915 5231 5018 28 48 0 0 chr13 56625228 56625270 -63119628 + AT_rich Low_complexity Low_complexity 1 42 0 317 322 55 35 chr13 56625284 56625542 -63119356 - L1M4 LINE L1 -2415 3731 3480 2044 81 0 0 chr13 56625542 56625814 -63119084 - L1PA6 LINE L1 0 6154 5883 317 322 55 35 chr13 56625814 56626068 -63118830 - L1M4 LINE L1 -2666 3480 3209 482 379 17 4 chr13 56626112 56626352 -63118546 + LTR16A LTR ERVL 55 297 -153 914 329 82 2 chr13 56626384 56626810 -63118088 + HERV16 LTR ERVL 934 1393 -3603 381 229 0 0 chr13 56626869 56626939 -63117959 - MER30 DNA MER1_type 0 230 161 198 0 0 0 chr13 56627845 56627867 -63117031 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 21 71 0 0 chr13 56629785 56629827 -63115071 + AT_rich Low_complexity Low_complexity 1 42 0 24 89 0 30 chr13 56630062 56630163 -63114735 + AT_rich Low_complexity Low_complexity 1 98 0 506 178 10 2 chr13 56630239 56630348 -63114550 - L1M2 LINE L1 -555 5601 5494 215 192 154 26 chr13 56630352 56630430 -63114468 + L2 LINE L2 2325 2412 -902 468 312 134 27 chr13 56630553 56630845 -63114053 + L2 LINE L2 2987 3309 -4 241 387 57 0 chr13 56631974 56632080 -63112818 - L2 LINE L2 0 3272 3161 475 164 0 0 chr13 56632080 56632175 -63112723 - AluSp/q SINE Alu 0 305 211 1923 141 7 3 chr13 56632436 56632734 -63112164 - AluSx SINE Alu -13 299 1 228 121 0 86 chr13 56632876 56632934 -63111964 + (TG)n Simple_repeat Simple_repeat 2 54 0 205 341 119 49 chr13 56632987 56633213 -63111685 - L2 LINE L2 -454 2860 2619 812 244 0 0 chr13 56633229 56633397 -63111501 + AluJb SINE Alu 122 289 -23 467 360 80 0 chr13 56633521 56633721 -63111177 - MIR SINE MIR -36 226 11 2158 233 38 28 chr13 56634031 56634710 -63110188 + L1M4 LINE L1 4259 4944 -1202 255 125 0 0 chr13 56634710 56634750 -63110148 + (CA)n Simple_repeat Simple_repeat 1 40 0 1233 238 82 12 chr13 56634768 56635141 -63109757 - MLT2B1 LTR ERVL 0 397 5 1096 246 49 20 chr13 56635148 56635538 -63109360 + L1M4 LINE L1 4964 5364 -782 * 7045 31 1 0 chr13 56635536 56636384 -63108514 - L1PA4 LINE L1 -1661 4485 3637 7364 34 5 2 chr13 56636384 56638039 -63106859 + L1PA4 LINE L1 4497 6150 -5 5769 145 79 19 chr13 56638042 56639115 -63105783 - MER57B-int LTR ERV1 -2642 3304 2167 330 143 0 0 chr13 56639111 56639160 -63105738 - MER57B-int LTR ERV1 -4908 2629 2581 * 4536 153 16 5 chr13 56639157 56640032 -63104866 - MER57B-int LTR ERV1 -5060 886 1 2798 139 9 0 chr13 56640032 56640462 -63104436 - MER57B LTR ERV1 0 434 1 678 212 178 0 chr13 56640462 56640703 -63104195 - MLT1A2-int LTR MaLR -970 401 1 1007 228 8 51 chr13 56640703 56640938 -63103960 - MLT1A2 LTR MaLR 0 374 149 1189 233 69 23 chr13 56640938 56641285 -63103613 - MLT1A1 LTR MaLR -2 363 1 1007 228 8 51 chr13 56641285 56641303 -63103595 - MLT1A2 LTR MaLR -225 149 132 6317 222 23 9 chr13 56641799 56643106 -63101792 + L1M1 LINE L1 14 1338 -6227 3563 129 15 26 chr13 56643108 56643758 -63101140 + L1M1 LINE L1 2544 3186 -4379 1928 152 0 0 chr13 56644711 56645007 -63099891 + AluSx SINE Alu 1 296 -16 1974 232 26 9 chr13 56645102 56646120 -63098778 + L1M1 LINE L1 3876 4918 -2647 225 182 0 0 chr13 56646112 56646156 -63098742 + L1 LINE L1 3287 3330 -2816 * 204 40 0 0 chr13 56646629 56646654 -63098244 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 5544 108 21 1 chr13 56646654 56648005 -63096893 - L1PA10 LINE L1 -21 6147 4768 865 71 0 0 chr13 56648005 56648113 -63096785 + L1PA5 LINE L1 6030 6141 -13 22 0 0 0 chr13 56648129 56648151 -63096747 + AT_rich Low_complexity Low_complexity 1 22 0 201 211 0 0 chr13 56648314 56648371 -63096527 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 742 273 83 27 chr13 56648389 56648786 -63096112 + MLT1J2 LTR MaLR 1 436 -10 323 257 46 46 chr13 56651286 56651395 -63093503 + MLT1E1 LTR MaLR 33 141 -513 836 264 110 22 chr13 56651917 56652190 -63092708 - LTR40a LTR ERVL -217 302 6 434 333 107 19 chr13 56652846 56653107 -63091791 - MLT1I LTR MaLR -18 391 108 723 126 105 32 chr13 56653646 56653836 -63091062 - L1MA7 LINE L1 -2 6289 6086 425 255 85 55 chr13 56653836 56654036 -63090862 - L1MC4a LINE L1 -1882 5926 5721 2129 94 6 61 chr13 56654054 56654382 -63090516 + AluSx SINE Alu 1 310 -2 3870 246 71 33 chr13 56654540 56655924 -63088974 - Charlie1a DNA MER1_type 0 1455 20 219 273 202 0 chr13 56657582 56657681 -63087217 - L2 LINE L2 -16 3297 3179 429 323 153 23 chr13 56658074 56658517 -63086381 - L2 LINE L2 -874 2440 1940 2451 218 8 4 chr13 56658729 56659201 -63085697 + MLT2B2 LTR ERVL 2 475 -40 21 0 0 0 chr13 56659414 56659435 -63085463 + AT_rich Low_complexity Low_complexity 1 21 0 9881 32 3 2 chr13 56660582 56662099 -63082799 - L1P1 LINE L1 -458 5697 4178 * 15542 41 0 0 chr13 56662095 56664036 -63080862 + L1P LINE L1 1751 3691 -2455 528 260 25 15 chr13 56664191 56664387 -63080511 - MLT1E-int LTR MaLR -873 498 301 248 297 116 22 chr13 56664371 56664509 -63080389 - MLT1E-int LTR MaLR -1172 199 49 * 1185 293 129 27 chr13 56664558 56665086 -63079812 - MLT1E LTR MaLR -13 562 1 25 0 0 0 chr13 56665498 56665523 -63079375 + AT_rich Low_complexity Low_complexity 1 25 0 279 231 42 63 chr13 56665829 56665972 -63078926 + L1M4 LINE L1 3843 3982 -2164 25 65 0 0 chr13 56666367 56666413 -63078485 + AT_rich Low_complexity Low_complexity 1 46 0 27 49 0 0 chr13 56668017 56668058 -63076840 + AT_rich Low_complexity Low_complexity 1 41 0 245 365 9 0 chr13 56668676 56668783 -63076115 + MLT1-int LTR MaLR 777 884 -487 2324 128 34 3 chr13 56668891 56669244 -63075654 - THE1B LTR MaLR 0 364 1 2812 133 5 7 chr13 56669244 56669672 -63075226 - THE1B-int LTR MaLR 0 1580 1154 1750 142 68 9 chr13 56669672 56669996 -63074902 + MER61A LTR ERV1 1 343 0 2368 174 35 55 chr13 56669996 56670328 -63074570 + MER61A-int LTR ERV1 1 338 -4879 830 102 78 0 chr13 56670328 56670456 -63074442 + MER85 DNA T2_type 2 139 0 2368 174 35 55 chr13 56670456 56670584 -63074314 + MER61A-int LTR ERV1 338 449 -4768 2470 62 3 0 chr13 56670584 56670891 -63074007 - AluY SINE Alu -3 308 1 2368 174 35 55 chr13 56670891 56671008 -63073890 + MER61A-int LTR ERV1 449 567 -4650 * 3184 110 77 6 chr13 56670978 56671498 -63073400 + MER61A-int LTR ERV1 1384 1940 -3277 1089 207 22 4 chr13 56671710 56671942 -63072956 - MER46A DNA MER2_type 0 236 1 1673 216 14 45 chr13 56671960 56672000 -63072898 - MLT2D LTR ERVL 0 414 374 360 43 0 0 chr13 56672000 56672046 -63072852 + (TG)n Simple_repeat Simple_repeat 2 47 0 1673 216 14 45 chr13 56672046 56672432 -63072466 - MLT2D LTR ERVL -40 374 1 2042 210 184 11 chr13 56672432 56672570 -63072328 - ERVL-D LTR ERVL -8 5756 5643 2541 106 57 7 chr13 56672570 56672975 -63071923 + MSTA LTR MaLR 4 428 0 2042 210 184 11 chr13 56672975 56673364 -63071534 - ERVL-D LTR ERVL -121 5643 5138 1042 187 100 79 chr13 56673367 56673532 -63071366 + MLT1A2 LTR MaLR 1 161 -213 1727 168 18 0 chr13 56673532 56673817 -63071081 + AluJb SINE Alu 7 296 -16 1042 187 100 79 chr13 56673817 56674112 -63070786 + MLT1A2 LTR MaLR 161 374 0 1869 205 16 16 chr13 56674115 56674496 -63070402 - ERVL-D LTR ERVL -628 5136 4756 1157 203 13 39 chr13 56674638 56674943 -63069955 + L1MA9 LINE L1 6015 6311 -1 2066 209 92 4 chr13 56677139 56677607 -63067291 + LTR22 LTR ERVK 1 509 0 1120 180 99 123 chr13 56678336 56678741 -63066157 + MSTD LTR MaLR 2 396 0 188 397 17 34 chr13 56678818 56678997 -63065901 + L2 LINE L2 1970 2145 -1169 204 161 48 16 chr13 56679575 56679637 -63065261 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 36 0 0 chr13 56680210 56680238 -63064660 + AT_rich Low_complexity Low_complexity 1 28 0 1913 240 63 25 chr13 56683022 56683497 -63061401 - MLT1D LTR MaLR -12 493 1 229 253 160 0 chr13 56683725 56683800 -63061098 + L1MC4 LINE L1 6616 6702 -1340 269 309 0 12 chr13 56683802 56683886 -63061012 + (TA)n Simple_repeat Simple_repeat 1 83 0 22 80 0 0 chr13 56683913 56683963 -63060935 + AT_rich Low_complexity Low_complexity 1 50 0 1333 241 0 10 chr13 56684234 56684524 -63060374 - AluJo SINE Alu -25 287 1 737 114 73 0 chr13 56686026 56686149 -63058749 + L1MA1 LINE L1 6171 6302 0 444 357 16 44 chr13 56686230 56686412 -63058486 - L3 LINE CR1 -930 647 471 2480 196 58 7 chr13 56686412 56686985 -63057913 - L1 LINE L1 -1624 4522 3921 3988 171 33 14 chr13 56687027 56687907 -63056991 + L1M2 LINE L1 4466 5389 -902 1631 209 9 20 chr13 56687907 56688256 -63056642 - MER7A DNA MER2_type 0 346 4 3988 171 33 14 chr13 56688256 56688694 -63056204 + L1M2 LINE L1 5389 5817 -474 255 330 19 10 chr13 56689457 56689560 -63055338 + L1ME3A LINE L1 1108 1211 -5423 289 303 119 0 chr13 56689878 56689987 -63054911 - MLT1E LTR MaLR -471 122 1 24 0 0 0 chr13 56690061 56690085 -63054813 + AT_rich Low_complexity Low_complexity 1 24 0 2304 135 11 8 chr13 56690251 56690613 -63054285 + THE1B LTR MaLR 2 364 0 5989 143 46 14 chr13 56690614 56691597 -63053301 + THE1B-int LTR MaLR 2 1015 -565 1698 42 14 1 chr13 56691740 56692499 -63052399 - L1PA5 LINE L1 0 6154 5307 * 7835 26 0 1 chr13 56692498 56693435 -63051463 + L1PA5 LINE L1 4359 5294 -852 279 371 61 25 chr13 56693522 56693719 -63051179 + L2 LINE L2 1269 1472 -1842 23 33 0 0 chr13 56693856 56693886 -63051012 + AT_rich Low_complexity Low_complexity 1 30 0 1484 221 0 3 chr13 56693949 56694239 -63050659 + AluJo SINE Alu 5 293 -19 239 266 104 40 chr13 56694290 56694463 -63050435 + L1ME3A LINE L1 1526 1709 -4833 461 167 12 0 chr13 56694617 56694701 -63050197 - AluS SINE Alu -228 85 1 231 305 82 50 chr13 56694709 56695293 -63049605 + L1ME3A LINE L1 5170 5772 -872 1400 281 145 22 chr13 56695387 56695494 -63049404 + L1ME3A LINE L1 5797 5890 -778 1393 188 43 0 chr13 56695494 56695770 -63049128 + L1PB4 LINE L1 5869 6156 0 1400 281 145 22 chr13 56695770 56696421 -63048477 + L1ME3A LINE L1 5890 6648 -20 4374 188 10 5 chr13 56697019 56697886 -63047012 - L1P LINE L1 -1107 5039 4168 * 7297 222 16 14 chr13 56697883 56699601 -63045297 + L1P LINE L1 1729 3449 -2697 1051 217 7 29 chr13 56699707 56699983 -63044915 - MER61-int LTR ERV1 -85 5132 4863 * 10121 106 9 33 chr13 56699975 56702893 -63042005 - MER61-int LTR ERV1 -391 6659 1993 3346 177 11 6 chr13 56702994 56703620 -63041278 + L1P LINE L1 3544 4172 -1974 1355 273 52 47 chr13 56704258 56704964 -63039934 + L1ME3A LINE L1 5461 6170 0 231 279 57 57 chr13 56706530 56706688 -63038210 - L2 LINE L2 -65 3248 3091 1187 231 66 55 chr13 56706693 56707147 -63037751 + MLT1C LTR MaLR 9 467 0 430 333 136 9 chr13 56707469 56707697 -63037201 + MIR SINE MIR 6 262 0 254 28 0 28 chr13 56709334 56709370 -63035528 + (TA)n Simple_repeat Simple_repeat 1 35 0 195 372 0 43 chr13 56709493 56709587 -63035311 + MIR SINE MIR 62 151 -57 22 0 0 0 chr13 56710320 56710342 -63034556 + AT_rich Low_complexity Low_complexity 1 22 0 226 313 149 60 chr13 56711612 56711960 -63032938 + L2 LINE L2 2581 2959 -355 795 314 124 57 chr13 56712921 56713119 -63031779 + L2 LINE L2 1762 1945 -1369 2107 107 0 0 chr13 56713119 56713408 -63031490 - AluSg SINE Alu -21 289 1 795 314 124 57 chr13 56713408 56713958 -63030940 + L2 LINE L2 1945 2560 -754 245 333 29 0 chr13 56714132 56714270 -63030628 + HAL1 LINE L1 1538 1679 -828 374 146 131 46 chr13 56714596 56714726 -63030172 - LTR19A LTR ERV1 -16 470 330 270 293 143 15 chr13 56715970 56716103 -63028795 + MLT1H1 LTR MaLR 125 274 -281 269 254 0 15 chr13 56716286 56716353 -63028545 + L2 LINE L2 2728 2793 -521 29 60 0 0 chr13 56717198 56717248 -63027650 + AT_rich Low_complexity Low_complexity 1 50 0 246 253 0 88 chr13 56717539 56717630 -63027268 - MIR SINE MIR -70 192 110 22 0 0 0 chr13 56717873 56717895 -63027003 + AT_rich Low_complexity Low_complexity 1 22 0 39 60 0 0 chr13 56717976 56718043 -63026855 + AT_rich Low_complexity Low_complexity 1 67 0 270 374 68 14 chr13 56718155 56718302 -63026596 + MIR SINE MIR 8 162 -100 348 283 21 0 chr13 56719947 56720092 -63024806 + L1MC4a LINE L1 5738 5885 -1923 469 360 68 34 chr13 56720605 56720986 -63023912 - MLT1I LTR MaLR -15 394 1 213 277 77 0 chr13 56721124 56721189 -63023709 + MIR SINE MIR 41 110 -152 185 234 31 31 chr13 56722624 56722688 -63022210 - MIR SINE MIR -79 183 120 407 231 101 77 chr13 56722850 56723019 -63021879 - MER20 DNA MER1_type -1 218 46 25 75 0 0 chr13 56723150 56723203 -63021695 + AT_rich Low_complexity Low_complexity 1 53 0 628 272 72 102 chr13 56723866 56724396 -63020502 - L1ME LINE L1 -5547 523 10 25 31 0 0 chr13 56725119 56725151 -63019747 + AT_rich Low_complexity Low_complexity 1 32 0 2034 110 34 3 chr13 56725868 56726159 -63018739 + AluSx SINE Alu 1 300 -12 674 160 14 123 chr13 56726200 56726412 -63018486 - L1MC3 LINE L1 -8 7777 7589 206 309 24 111 chr13 56728166 56728284 -63016614 - MIR SINE MIR -28 234 140 2126 97 28 0 chr13 56728284 56728574 -63016324 + AluSg SINE Alu 1 298 -12 206 309 24 111 chr13 56728574 56728662 -63016236 - MIR SINE MIR -122 140 46 22 0 0 0 chr13 56729486 56729508 -63015390 + AT_rich Low_complexity Low_complexity 1 22 0 2492 66 0 0 chr13 56729928 56730233 -63014665 - AluY SINE Alu -6 305 1 24 32 0 0 chr13 56730887 56730918 -63013980 + AT_rich Low_complexity Low_complexity 1 31 0 12053 96 6 7 chr13 56731840 56734378 -63010520 - L1PA7 LINE L1 -2 6152 3608 237 65 0 0 chr13 56734378 56734409 -63010489 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 2660 152 33 0 chr13 56734924 56735352 -63009546 - MER41-int LTR ERV1 -792 5154 4713 3480 37 5 5 chr13 56735352 56735788 -63009110 - L1P LINE L1 -2045 4101 3666 22 0 0 0 chr13 56736397 56736419 -63008479 + AT_rich Low_complexity Low_complexity 1 22 0 2331 50 40 10 chr13 56736847 56737147 -63007751 + AluY SINE Alu 1 309 -2 441 0 0 0 chr13 56737208 56737257 -63007641 + (CA)n Simple_repeat Simple_repeat 2 50 0 1265 218 24 34 chr13 56739836 56740134 -63004764 + AluJo SINE Alu 1 295 -7 314 272 64 79 chr13 56741152 56741354 -63003544 - L2 LINE L2 -455 2859 2661 29 0 0 0 chr13 56741411 56741440 -63003458 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 56741990 56742016 -63002882 + AT_rich Low_complexity Low_complexity 1 26 0 941 167 57 0 chr13 56742476 56742703 -63002195 - L1MA9 LINE L1 -1 6311 6072 1236 243 13 13 chr13 56742704 56743021 -63001877 - L1 LINE L1 -2234 4148 3832 * 2034 249 117 61 chr13 56743012 56743399 -63001499 - L1 LINE L1 -3826 2556 2192 2226 116 0 0 chr13 56743399 56743701 -63001197 + AluSx SINE Alu 3 304 -8 2034 249 117 61 chr13 56743701 56744990 -62999908 - L1 LINE L1 -4190 2192 777 3744 246 28 52 chr13 56745004 56746112 -62998786 + MSTD-int LTR MaLR 561 1730 -5 596 233 52 1 chr13 56746123 56746262 -62998636 + MSTD LTR MaLR 3 162 -212 1026 106 0 7 chr13 56746268 56746410 -62998488 + AluSq/x SINE Alu 1 141 -171 1860 104 7 58 chr13 56746414 56746559 -62998339 + AluSx SINE Alu 2 124 -188 1669 120 117 15 chr13 56746559 56746833 -62998065 + AluSg1 SINE Alu 2 303 -6 1860 104 7 58 chr13 56746833 56746995 -62997903 + AluSx SINE Alu 124 293 -19 724 247 46 0 chr13 56747013 56747187 -62997711 + MSTD LTR MaLR 215 396 0 30 59 0 0 chr13 56747208 56747259 -62997639 + AT_rich Low_complexity Low_complexity 1 51 0 945 266 52 46 chr13 56748662 56749206 -62995692 - L1ME1 LINE L1 -10 6225 5679 * 1939 262 81 41 chr13 56749188 56749288 -62995610 - L1ME1 LINE L1 -3267 2948 2854 2045 127 3 0 chr13 56749288 56749607 -62995291 - AluSp SINE Alu 0 320 1 1939 262 81 41 chr13 56749607 56751547 -62993351 - L1ME1 LINE L1 -3361 2854 855 610 295 47 31 chr13 56751536 56751794 -62993104 - L1ME1 LINE L1 -6097 299 38 * 187 228 175 0 chr13 56751794 56751851 -62993047 - L3 LINE CR1 -893 684 618 238 255 191 0 chr13 56752659 56752800 -62992098 + L1ME3A LINE L1 854 1021 -4887 510 299 40 68 chr13 56752829 56753430 -62991468 + L1ME3A LINE L1 1103 1870 -4737 695 303 100 63 chr13 56753945 56754904 -62989994 + L1ME3A LINE L1 2411 3413 -3013 665 309 112 19 chr13 56755151 56755385 -62989513 + L1ME3A LINE L1 5598 5809 -641 222 37 0 0 chr13 56755385 56755412 -62989486 + (TG)n Simple_repeat Simple_repeat 2 28 0 665 309 112 19 chr13 56755412 56755874 -62989024 + L1ME3A LINE L1 5809 6441 -9 230 224 0 60 chr13 56756139 56756206 -62988692 + GA-rich Low_complexity Low_complexity 2 64 0 23 0 0 0 chr13 56756299 56756322 -62988576 + AT_rich Low_complexity Low_complexity 1 23 0 1753 152 3 37 chr13 56756572 56756894 -62988004 - AluSq SINE Alu -2 311 1 1949 288 44 14 chr13 56757351 56758081 -62986817 + HsTC2 DNA Tc2 2 753 -1145 553 273 53 36 chr13 56758088 56758425 -62986473 + HsTC2 DNA Tc2 1281 1799 -99 5301 124 56 29 chr13 56759180 56760419 -62984479 + L1PB2 LINE L1 4878 6150 -1 1077 147 46 0 chr13 56760601 56760819 -62984079 - L1MA8 LINE L1 -5 6286 6059 207 0 0 0 chr13 56761939 56761962 -62982936 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1197 206 3 87 chr13 56761966 56762276 -62982622 - AluJb SINE Alu -17 285 2 3575 145 0 7 chr13 56763430 56764017 -62980881 - L1P LINE L1 -869 5277 4695 5580 100 40 1 chr13 56764048 56764848 -62980050 + L1PA10 LINE L1 5338 6168 0 23 0 0 0 chr13 56765055 56765078 -62979820 + AT_rich Low_complexity Low_complexity 1 23 0 259 250 0 56 chr13 56765078 56765238 -62979660 + A-rich Low_complexity Low_complexity 4 154 0 480 339 94 51 chr13 56765260 56765868 -62979030 + HAL1b LINE L1 1 634 -714 1864 120 0 28 chr13 56765906 56766189 -62978709 + AluSx SINE Alu 1 275 -37 594 0 0 0 chr13 56766196 56766262 -62978636 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 6578 194 43 18 chr13 56766262 56767986 -62976912 - L1M1 LINE L1 -743 6822 5183 * 12237 174 57 31 chr13 56767982 56770139 -62974759 - L1M1 LINE L1 -3821 3744 1362 620 62 0 0 chr13 56770139 56770219 -62974679 + L1PA5 LINE L1 6075 6154 0 12237 174 57 31 chr13 56770219 56771602 -62973296 - L1M1 LINE L1 -6203 1362 17 186 224 0 0 chr13 56771662 56771711 -62973187 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 33 0 0 chr13 56771806 56771836 -62973062 + AT_rich Low_complexity Low_complexity 1 30 0 235 419 29 12 chr13 56774212 56774384 -62970514 - MIR SINE MIR -26 236 62 1594 83 9 9 chr13 56774511 56774739 -62970159 + L1PA7 LINE L1 5882 6109 -45 331 321 121 37 chr13 56774758 56774948 -62969950 - MIR SINE MIR -56 206 1 453 170 89 18 chr13 56776502 56776614 -62968284 + L1MA8 LINE L1 6166 6285 -6 232 220 0 30 chr13 56776618 56776718 -62968180 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 34 55 0 0 chr13 56776759 56776814 -62968084 + AT_rich Low_complexity Low_complexity 1 55 0 221 198 57 19 chr13 56776869 56776975 -62967923 + (TA)n Simple_repeat Simple_repeat 1 110 0 * 294 195 46 46 chr13 56776925 56777099 -62967799 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 319 151 0 47 chr13 56777197 56777283 -62967615 + (TA)n Simple_repeat Simple_repeat 1 82 0 205 190 17 35 chr13 56777359 56777417 -62967481 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 30 45 0 0 chr13 56778396 56778440 -62966458 + AT_rich Low_complexity Low_complexity 1 44 0 776 194 10 135 chr13 56780473 56780761 -62964137 + MSTB2 LTR MaLR 2 259 -179 2474 50 0 0 chr13 56780834 56781133 -62963765 + AluY SINE Alu 1 299 -12 470 264 68 0 chr13 56781137 56781285 -62963613 + MSTB2 LTR MaLR 300 457 0 2230 120 0 3 chr13 56781643 56781951 -62962947 + AluSq SINE Alu 1 307 -6 560 321 60 45 chr13 56782276 56782825 -62962073 - MERVL LTR ERVL -3070 2415 1859 318 350 56 40 chr13 56783001 56783375 -62961523 - MERVL LTR ERVL -3418 1578 1199 313 339 108 36 chr13 56783721 56784197 -62960701 - L1ME LINE L1 -298 5823 5317 857 297 87 40 chr13 56784247 56785320 -62959578 + L1MDa LINE L1 1004 2126 -4414 228 220 0 0 chr13 56785365 56785424 -62959474 - LTR66 LTR ERVL -169 441 383 2449 58 0 3 chr13 56785611 56785923 -62958975 + AluY SINE Alu 1 311 0 426 20 0 0 chr13 56786260 56786311 -62958587 + (CA)n Simple_repeat Simple_repeat 2 52 0 356 326 52 46 chr13 56787662 56788006 -62956892 + MLT1I LTR MaLR 76 387 -22 229 330 23 11 chr13 56789719 56789807 -62955091 + L2 LINE L2 3191 3279 -34 225 154 0 0 chr13 56789851 56789890 -62955008 + A-rich Low_complexity Low_complexity 1 39 0 1882 117 3 0 chr13 56790380 56790662 -62954236 - L1PA7 LINE L1 -1 6153 5871 2274 204 38 106 chr13 56790664 56791422 -62953476 + L1MC3 LINE L1 6874 7580 -205 915 186 15 10 chr13 56791469 56791673 -62953225 + AluJo SINE Alu 1 205 -107 364 123 0 2 chr13 56791724 56791803 -62953095 + AluS SINE Alu 221 281 -20 306 289 69 40 chr13 56793368 56793541 -62951357 + HAL1 LINE L1 1426 1603 -904 398 276 64 0 chr13 56794261 56794417 -62950481 - L1M4 LINE L1 -2055 4091 3926 1238 217 32 11 chr13 56795142 56795302 -62949596 - AluJo SINE Alu -29 283 128 483 33 0 0 chr13 56795302 56795363 -62949535 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1797 151 21 0 chr13 56795363 56795642 -62949256 - AluSx SINE Alu -27 285 1 1238 217 32 11 chr13 56795642 56795757 -62949141 - AluJo SINE Alu -183 129 1 21 0 0 0 chr13 56795822 56795843 -62949055 + AT_rich Low_complexity Low_complexity 1 21 0 1971 128 104 3 chr13 56795891 56795941 -62948957 - L1PA12 LINE L1 -180 5988 5939 848 258 119 21 chr13 56795941 56796278 -62948620 - L1MA4A LINE L1 -365 5938 5569 303 298 40 33 chr13 56796279 56796430 -62948468 - L1MA4A LINE L1 -758 5426 5275 407 214 34 39 chr13 56797153 56797314 -62947584 - L1M LINE L1 -738 5426 5275 568 141 20 0 chr13 56797425 56797524 -62947374 - AluY SINE Alu 0 311 211 1813 100 30 40 chr13 56799454 56799754 -62945144 + AluSc SINE Alu 1 297 -12 1840 184 8 52 chr13 56799828 56800229 -62944669 + MLT1B LTR MaLR 8 390 0 214 172 62 16 chr13 56801287 56801351 -62943547 + GA-rich Low_complexity Low_complexity 4 70 0 5812 11 0 0 chr13 56802120 56802776 -62942122 - L1HS LINE L1 0 6155 5500 3522 20 0 0 chr13 56802767 56803304 -62941594 + L1P1 LINE L1 4963 5499 -656 * 1902 152 7 3 chr13 56804091 56804393 -62940505 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr13 56804738 56804767 -62940131 + AT_rich Low_complexity Low_complexity 1 29 0 5088 146 24 8 chr13 56805518 56806396 -62938502 + L1PB4 LINE L1 5254 6145 -11 399 238 75 41 chr13 56806401 56806695 -62938203 + L1ME2 LINE L1 2739 3042 -3104 373 240 104 77 chr13 56806709 56806892 -62938006 + L1ME2 LINE L1 5477 5664 -500 404 241 23 6 chr13 56806918 56807092 -62937806 + GA-rich Low_complexity Low_complexity 4 180 0 1028 269 69 29 chr13 56807100 56807554 -62937344 + L1ME2 LINE L1 5668 6144 -20 1734 107 0 16 chr13 56807651 56807904 -62936994 + AluSx SINE Alu 1 249 -63 186 209 0 0 chr13 56807916 56807959 -62936939 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr13 56807959 56807995 -62936903 + AT_rich Low_complexity Low_complexity 1 36 0 232 192 0 55 chr13 56809537 56809610 -62935288 - L1MCa LINE L1 -4363 2063 1995 222 191 0 0 chr13 56809628 56809675 -62935223 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr13 56810198 56810228 -62934670 + AT_rich Low_complexity Low_complexity 1 30 0 986 139 53 10 chr13 56810228 56810437 -62934461 - L1MA7 LINE L1 -3 6288 6071 30333 117 13 55 chr13 56812443 56818864 -62926034 + L1PA7 LINE L1 12 6150 -4 22 0 0 0 chr13 56819061 56819083 -62925815 + AT_rich Low_complexity Low_complexity 1 22 0 757 172 18 29 chr13 56819746 56819931 -62924967 + L1MA8 LINE L1 5851 6044 -256 189 0 0 0 chr13 56821211 56821232 -62923666 + (A)n Simple_repeat Simple_repeat 1 21 0 1426 188 51 21 chr13 56821565 56821900 -62922998 - L1MA8 LINE L1 -4 6287 5943 22 0 0 0 chr13 56822124 56822146 -62922752 + AT_rich Low_complexity Low_complexity 1 22 0 605 249 78 74 chr13 56823632 56823889 -62921009 - HERV16 LTR ERVL -3060 1936 1679 1803 201 67 12 chr13 56824356 56824758 -62920140 - MSTB LTR MaLR -2 424 1 2421 121 28 25 chr13 56824808 56825171 -62919727 + THE1B LTR MaLR 1 364 0 495 344 26 5 chr13 56825201 56825396 -62919502 + LTR16A LTR ERVL 237 435 -15 205 337 82 0 chr13 56825687 56825785 -62919113 + MIR SINE MIR 107 212 -50 198 143 0 0 chr13 56826103 56826138 -62918760 + (CA)n Simple_repeat Simple_repeat 2 36 0 905 127 28 9 chr13 56826146 56826468 -62918430 + (TAGA)n Simple_repeat Simple_repeat 3 329 0 3289 149 47 13 chr13 56826706 56827340 -62917558 + L1MC1 LINE L1 5576 6333 0 788 230 14 37 chr13 56827376 56827593 -62917305 - MER58C DNA MER1_type 0 215 4 24 32 0 0 chr13 56828200 56828231 -62916667 + AT_rich Low_complexity Low_complexity 1 31 0 1227 224 97 3 chr13 56829561 56829923 -62914975 + L1MC3 LINE L1 7185 7580 -205 943 191 15 10 chr13 56829970 56830174 -62914724 + AluJo SINE Alu 1 205 -107 383 123 0 2 chr13 56830226 56830305 -62914593 + AluS SINE Alu 222 282 -20 738 276 6 73 chr13 56832281 56832596 -62912302 - HAL1 LINE L1 -823 1684 1391 454 282 37 9 chr13 56832609 56832825 -62912073 - HAL1 LINE L1 -1305 1202 981 357 282 43 25 chr13 56834175 56834338 -62910560 - L1M4 LINE L1 -2057 4089 3924 641 243 0 0 chr13 56835044 56835180 -62909718 - AluJb SINE Alu -29 283 148 420 189 63 11 chr13 56835204 56835334 -62909564 - AluSg/x SINE Alu 0 318 184 1038 135 0 116 chr13 56835335 56835542 -62909356 + AluSq SINE Alu 114 296 -17 633 182 18 87 chr13 56835647 56835854 -62909044 + L1MC3 LINE L1 6801 6957 -828 2437 244 44 3 chr13 56835899 56836494 -62908404 + L1MC3 LINE L1 6962 7580 -205 943 191 15 10 chr13 56836541 56836745 -62908153 + AluJo SINE Alu 1 205 -107 383 123 0 2 chr13 56836797 56836876 -62908022 + AluS SINE Alu 221 281 -20 768 277 6 70 chr13 56838852 56839166 -62905732 - HAL1 LINE L1 -823 1684 1391 454 282 37 9 chr13 56839179 56839395 -62905503 - HAL1 LINE L1 -1305 1202 981 357 282 43 25 chr13 56840749 56840912 -62903986 - L1M4 LINE L1 -2057 4089 3924 641 243 0 0 chr13 56841618 56841754 -62903144 - AluJb SINE Alu -29 283 148 420 189 63 11 chr13 56841778 56841908 -62902990 - AluSg/x SINE Alu 0 316 182 1038 135 0 116 chr13 56841909 56842116 -62902782 + AluSq SINE Alu 114 296 -17 633 178 15 86 chr13 56842224 56842428 -62902470 + L1MC3 LINE L1 6782 6957 -828 2437 244 44 3 chr13 56842473 56843068 -62901830 + L1MC3 LINE L1 6962 7580 -205 1047 166 22 122 chr13 56843115 56843435 -62901463 + AluJo SINE Alu 1 288 -14 768 277 6 70 chr13 56844959 56845273 -62899625 - HAL1 LINE L1 -823 1684 1391 407 292 37 9 chr13 56845286 56845502 -62899396 - HAL1 LINE L1 -1305 1202 981 357 282 43 25 chr13 56846853 56847016 -62897882 - L1M4 LINE L1 -2057 4089 3924 641 243 0 0 chr13 56847722 56847858 -62897040 - AluJb SINE Alu -29 283 148 420 189 63 11 chr13 56847882 56848012 -62896886 - AluSg/x SINE Alu 0 318 184 1038 135 0 116 chr13 56848013 56848220 -62896678 + AluSq SINE Alu 114 296 -17 633 178 15 86 chr13 56848328 56848532 -62896366 + L1MC3 LINE L1 6782 6957 -828 2437 244 44 3 chr13 56848577 56849172 -62895726 + L1MC3 LINE L1 6962 7580 -205 1007 177 10 100 chr13 56849219 56849529 -62895369 + AluJo SINE Alu 1 282 -30 317 289 69 40 chr13 56851112 56851285 -62893613 + HAL1 LINE L1 1426 1603 -904 369 274 78 6 chr13 56852005 56852184 -62892714 - L1M4 LINE L1 -2055 4091 3900 1231 214 32 25 chr13 56852886 56853050 -62891848 - AluJo SINE Alu -29 283 122 447 35 0 0 chr13 56853050 56853107 -62891791 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1843 151 21 0 chr13 56853107 56853386 -62891512 - AluSx SINE Alu -27 285 1 1231 214 32 25 chr13 56853386 56853501 -62891397 - AluJo SINE Alu -189 123 1 21 0 0 0 chr13 56853566 56853587 -62891311 + AT_rich Low_complexity Low_complexity 1 21 0 2019 125 104 3 chr13 56853635 56853685 -62891213 - L1PA12 LINE L1 -180 5988 5939 859 255 119 21 chr13 56853685 56854022 -62890876 - L1MA4A LINE L1 -365 5938 5569 438 222 34 35 chr13 56854897 56855070 -62889828 - L1MA4A LINE L1 -738 5426 5260 2154 128 10 0 chr13 56855169 56855475 -62889423 - AluY SINE Alu 0 311 3 1935 173 0 0 chr13 56855481 56855793 -62889105 - AluSx SINE Alu 0 312 1 4931 203 73 31 chr13 56855844 56857070 -62887828 - MER52C LTR ERV1 0 1278 2 1584 144 0 4 chr13 56857093 56857329 -62887569 - MER52C-int LTR ERV1 -2 7089 6855 10369 137 31 21 chr13 56857340 56858997 -62885901 - MER52C-int LTR ERV1 -354 6737 5064 * 16468 145 8 5 chr13 56858993 56862023 -62882875 - MER52-int LTR ERV1 -3817 3274 152 231 274 0 0 chr13 56862027 56862078 -62882820 + CT-rich Low_complexity Low_complexity 1 51 0 888 237 16 5 chr13 56862166 56862356 -62882542 - MER58A DNA MER1_type -30 194 3 314 45 23 0 chr13 56862365 56862409 -62882489 + (TC)n Simple_repeat Simple_repeat 1 45 0 229 383 90 22 chr13 56862475 56863204 -62881694 + L2 LINE L2 2241 3017 -255 1062 184 17 0 chr13 56863473 56863652 -62881246 + AluJb SINE Alu 112 293 -19 29 47 0 0 chr13 56863731 56863774 -62881124 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr13 56864428 56864469 -62880429 + AT_rich Low_complexity Low_complexity 1 41 0 304 290 151 58 chr13 56865527 56865872 -62879026 - L2 LINE L2 -3 3310 2934 202 194 32 0 chr13 56865882 56865944 -62878954 + (TTA)n Simple_repeat Simple_repeat 2 65 0 21 36 0 0 chr13 56866557 56866585 -62878313 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 56868533 56868555 -62876343 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 56868993 56869016 -62875882 + AT_rich Low_complexity Low_complexity 1 23 0 472 288 135 27 chr13 56869901 56870463 -62874435 + MER20B DNA MER1_type 85 707 -76 867 271 103 58 chr13 56870471 56870918 -62873980 + MLT1C LTR MaLR 1 467 0 26 0 0 0 chr13 56871006 56871032 -62873866 + AT_rich Low_complexity Low_complexity 1 26 0 13775 192 53 11 chr13 56871076 56876028 -62868870 - L1MA3 LINE L1 -336 7388 2221 5029 197 40 14 chr13 56876049 56877040 -62867858 - L1MA3 LINE L1 -6536 1029 13 21 0 0 0 chr13 56877521 56877542 -62867356 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 56878809 56878835 -62866063 + AT_rich Low_complexity Low_complexity 1 26 0 282 255 82 125 chr13 56878849 56878888 -62866010 - MIR SINE MIR -42 220 181 609 233 59 78 chr13 56878888 56879107 -62865791 + MER20 DNA MER1_type 1 215 -4 282 255 82 125 chr13 56879107 56879251 -62865647 - MIR SINE MIR -81 181 45 878 281 51 92 chr13 56879310 56879875 -62865023 + MLT1F LTR MaLR 1 542 0 183 268 24 0 chr13 56880604 56880645 -62864253 + L2 LINE L2 3220 3261 -11 322 167 24 12 chr13 56880728 56880812 -62864086 + L1MA4 LINE L1 6036 6120 -180 * 431 205 30 0 chr13 56880809 56880917 -62863981 + L1MA4A LINE L1 6179 6297 -3 324 306 67 50 chr13 56880996 56881176 -62863722 - L2 LINE L2 -8 3305 3123 2824 3 0 0 chr13 56882442 56882750 -62862148 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 56883337 56883358 -62861540 + AT_rich Low_complexity Low_complexity 1 21 0 231 362 102 23 chr13 56883933 56884110 -62860788 - L2 LINE L2 -832 2482 2292 194 304 35 61 chr13 56884731 56884846 -62860052 + MER5B DNA MER1_type 7 118 -60 26 30 0 0 chr13 56884964 56884997 -62859901 + AT_rich Low_complexity Low_complexity 1 33 0 2182 114 3 3 chr13 56885342 56885649 -62859249 + AluSg SINE Alu 1 307 -3 245 204 20 0 chr13 56885882 56885931 -62858967 + MIR SINE MIR 95 144 -64 602 25 0 25 chr13 56886179 56886258 -62858640 - L1PA8 LINE L1 -5 6167 6091 281 212 182 0 chr13 56886871 56886937 -62857961 - L2 LINE L2 -1 3312 3235 30 0 0 0 chr13 56887046 56887076 -62857822 + AT_rich Low_complexity Low_complexity 1 30 0 275 0 0 28 chr13 56887740 56887776 -62857122 + (CA)n Simple_repeat Simple_repeat 2 36 0 307 235 71 20 chr13 56888179 56888277 -62856621 + L1MC4 LINE L1 6601 6703 -1339 543 16 0 0 chr13 56888346 56888410 -62856488 + (TC)n Simple_repeat Simple_repeat 2 65 0 207 0 0 0 chr13 56888409 56888432 -62856466 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 278 354 92 35 chr13 56888591 56888851 -62856047 + L3 LINE CR1 1203 1477 -100 2350 20 0 0 chr13 56889058 56889351 -62855547 - L1P LINE L1 -2866 3280 2988 25 31 0 0 chr13 56889459 56889491 -62855407 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 56890237 56890265 -62854633 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr13 56890314 56890362 -62854536 + AT_rich Low_complexity Low_complexity 1 48 0 1141 169 54 14 chr13 56890518 56890797 -62854101 + L1MA7 LINE L1 5639 5938 -230 1936 186 12 7 chr13 56890836 56891240 -62853658 + L1MA6 LINE L1 5894 6299 -1 1823 100 30 40 chr13 56893524 56893825 -62851073 + AluSc SINE Alu 1 298 -11 1819 187 8 52 chr13 56893899 56894300 -62850598 + MLT1B LTR MaLR 8 390 0 214 172 62 16 chr13 56895358 56895422 -62849476 + GA-rich Low_complexity Low_complexity 4 70 0 5812 11 0 0 chr13 56896190 56896846 -62848052 - L1HS LINE L1 0 6155 5500 3522 20 0 0 chr13 56896837 56897374 -62847524 + L1P1 LINE L1 4963 5499 -656 * 1918 149 7 3 chr13 56898164 56898466 -62846432 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr13 56898811 56898840 -62846058 + AT_rich Low_complexity Low_complexity 1 29 0 5094 146 23 9 chr13 56899591 56900471 -62844427 + L1PB4 LINE L1 5254 6276 -22 392 241 75 41 chr13 56900474 56900768 -62844130 + L1ME2 LINE L1 2739 3042 -3104 373 240 104 77 chr13 56900782 56900965 -62843933 + L1ME2 LINE L1 5477 5664 -500 404 241 23 6 chr13 56900991 56901165 -62843733 + GA-rich Low_complexity Low_complexity 4 180 0 1044 274 65 25 chr13 56901173 56901627 -62843271 + L1ME2 LINE L1 5668 6144 -20 1734 107 0 16 chr13 56901724 56901977 -62842921 + AluSx SINE Alu 1 249 -63 186 209 0 0 chr13 56901989 56902032 -62842866 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr13 56902032 56902068 -62842830 + AT_rich Low_complexity Low_complexity 1 36 0 232 192 0 55 chr13 56903610 56903683 -62841215 - L1MCa LINE L1 -4363 2063 1995 222 191 0 0 chr13 56903701 56903748 -62841150 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr13 56904271 56904301 -62840597 + AT_rich Low_complexity Low_complexity 1 30 0 986 139 53 10 chr13 56904301 56904510 -62840388 - L1MA7 LINE L1 -3 6288 6071 30440 117 13 54 chr13 56906515 56912926 -62831972 + L1PA7 LINE L1 12 6150 -4 22 0 0 0 chr13 56913123 56913145 -62831753 + AT_rich Low_complexity Low_complexity 1 22 0 757 172 18 29 chr13 56913808 56913993 -62830905 + L1MA8 LINE L1 5851 6044 -256 23 0 0 0 chr13 56915270 56915293 -62829605 + AT_rich Low_complexity Low_complexity 1 23 0 1412 188 51 21 chr13 56915622 56915957 -62828941 - L1MA8 LINE L1 -4 6287 5943 22 0 0 0 chr13 56916181 56916203 -62828695 + AT_rich Low_complexity Low_complexity 1 22 0 625 269 66 59 chr13 56917710 56917966 -62826932 - HERV16 LTR ERVL -3060 1936 1679 1795 201 67 12 chr13 56918433 56918835 -62826063 - MSTB LTR MaLR -2 424 1 2365 124 28 25 chr13 56918885 56919248 -62825650 + THE1B LTR MaLR 1 364 0 500 340 35 5 chr13 56919273 56919473 -62825425 + LTR16A LTR ERVL 230 435 -15 252 337 82 0 chr13 56919764 56919862 -62825036 + MIR SINE MIR 107 212 -50 198 143 0 0 chr13 56920180 56920215 -62824683 + (CA)n Simple_repeat Simple_repeat 2 36 0 887 116 28 16 chr13 56920223 56920541 -62824357 + (TAGA)n Simple_repeat Simple_repeat 3 323 0 3241 151 44 13 chr13 56920779 56921406 -62823492 + L1MC1 LINE L1 5576 6324 -9 775 230 14 37 chr13 56921449 56921666 -62823232 - MER58C DNA MER1_type 0 215 4 24 32 0 0 chr13 56922273 56922304 -62822594 + AT_rich Low_complexity Low_complexity 1 31 0 1863 170 28 35 chr13 56924235 56924634 -62820264 + L1MA6 LINE L1 5905 6300 0 250 247 52 31 chr13 56925395 56925492 -62819406 - L1ME3A LINE L1 -229 5941 5843 43 0 0 0 chr13 56925495 56925538 -62819360 + AT_rich Low_complexity Low_complexity 1 43 0 243 291 43 21 chr13 56925669 56925810 -62819088 - HAL1 LINE L1 -757 1750 1607 4715 173 8 33 chr13 56925815 56927131 -62817767 + L1PB4 LINE L1 4864 6154 -2 505 282 141 44 chr13 56927140 56927623 -62817275 - HAL1 LINE L1 -917 1590 1012 213 65 0 0 chr13 56927623 56927654 -62817244 + (TTG)n Simple_repeat Simple_repeat 2 32 0 505 282 141 44 chr13 56927654 56927893 -62817005 - HAL1 LINE L1 -1495 1012 798 22 56 0 0 chr13 56928888 56928924 -62815974 + AT_rich Low_complexity Low_complexity 1 36 0 446 322 109 17 chr13 56930830 56931069 -62813829 - MIR SINE MIR 0 262 2 455 189 0 0 chr13 56932383 56932457 -62812441 + AluS SINE Alu 1 74 -239 1370 80 0 0 chr13 56933975 56934150 -62810748 + AluSp SINE Alu 139 313 0 344 161 0 0 chr13 57034687 57034749 -62710149 + L1MA2 LINE L1 6139 6200 -104 307 309 37 15 chr13 57035160 57035296 -62709602 + L2 LINE L2 2313 2451 -863 * 938 332 55 23 chr13 57035294 57035767 -62709131 + L2 LINE L2 2821 3308 -5 23 0 0 0 chr13 57036417 57036440 -62708458 + AT_rich Low_complexity Low_complexity 1 23 0 257 187 13 0 chr13 57037989 57038064 -62706834 + GA-rich Low_complexity Low_complexity 1 76 0 939 147 68 0 chr13 57038109 57038299 -62706599 + L1MA9 LINE L1 6105 6307 -5 7796 19 0 0 chr13 57038610 57039620 -62705278 + L1PA3 LINE L1 5146 6155 0 2808 16 0 0 chr13 57040300 57040618 -62704280 + AluYb8 SINE Alu 1 318 0 224 404 80 4 chr13 57040936 57041161 -62703737 - MIR SINE MIR 0 262 21 22 35 0 0 chr13 57042197 57042226 -62702672 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr13 57042802 57042824 -62702074 + (T)n Simple_repeat Simple_repeat 1 22 0 1776 219 42 7 chr13 57044243 57044299 -62700599 - L1 LINE L1 -1294 4852 4799 1864 142 0 0 chr13 57044299 57044567 -62700331 - AluSx SINE Alu -8 304 37 1776 219 42 7 chr13 57044567 57044939 -62699959 - L1 LINE L1 -1347 4799 4409 279 272 0 0 chr13 57044957 57045049 -62699849 + (TA)n Simple_repeat Simple_repeat 2 93 0 306 0 0 0 chr13 57045049 57045083 -62699815 + (CA)n Simple_repeat Simple_repeat 2 35 0 2001 158 11 0 chr13 57045089 57045443 -62699455 + L1PB4 LINE L1 5799 6156 0 22 0 0 0 chr13 57045537 57045559 -62699339 + AT_rich Low_complexity Low_complexity 1 22 0 541 276 151 53 chr13 57045696 57046284 -62698614 - HAL1 LINE L1 -330 2177 1532 30 59 0 0 chr13 57046344 57046395 -62698503 + AT_rich Low_complexity Low_complexity 1 51 0 311 289 31 0 chr13 57046911 57047008 -62697890 + L1MC3 LINE L1 6570 6669 -1116 32 67 0 0 chr13 57047056 57047116 -62697782 + AT_rich Low_complexity Low_complexity 1 60 0 358 187 77 22 chr13 57047209 57047300 -62697598 + MER53 DNA DNA 1 96 -93 340 292 21 0 chr13 57047576 57047672 -62697226 + MIR SINE MIR 41 138 -124 493 290 0 0 chr13 57047726 57047857 -62697041 + FLAM_C SINE Alu 2 132 -1 196 391 70 37 chr13 57047950 57048193 -62696705 + L3 LINE CR1 176 426 -1151 22 0 0 0 chr13 57049238 57049260 -62695638 + AT_rich Low_complexity Low_complexity 1 22 0 1192 195 7 39 chr13 57049558 57049865 -62695033 - L1MA7 LINE L1 -23 6268 5972 189 171 0 0 chr13 57050432 57050467 -62694431 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 24 0 24 chr13 57051103 57051128 -62693770 + AT_rich Low_complexity Low_complexity 1 26 -15 5996 103 7 6 chr13 57051128 57052752 -62692146 - L1PA11 LINE L1 -11 6163 4522 24 24 0 24 chr13 57052752 57052768 -62692130 + AT_rich Low_complexity Low_complexity 26 41 0 1759 149 0 11 chr13 57052814 57053083 -62691815 + AluSq SINE Alu 1 266 -47 1448 101 25 0 chr13 57053399 57053632 -62691266 + AluSg/x SINE Alu 79 316 0 252 0 0 0 chr13 57053670 57053698 -62691200 + (A)n Simple_repeat Simple_repeat 1 28 0 280 326 7 7 chr13 57054636 57054771 -62690127 - L1MEc LINE L1 -3345 3037 2903 216 0 0 0 chr13 57054950 57054974 -62689924 + (A)n Simple_repeat Simple_repeat 1 24 0 404 301 99 62 chr13 57054981 57055537 -62689361 - L1MEc LINE L1 -3673 2709 2129 431 298 129 44 chr13 57055725 57056111 -62688787 - L1MEc LINE L1 -4693 1870 1452 352 338 80 44 chr13 57056326 57056551 -62688347 - L1MEc LINE L1 -5300 1072 840 282 229 0 0 chr13 57056985 57057055 -62687843 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1498 110 0 5 chr13 57057086 57057295 -62687603 - AluSg/x SINE Alu -12 300 93 195 129 0 0 chr13 57057395 57057426 -62687472 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 1240 241 68 85 chr13 57057631 57058520 -62686378 - LTR28 LTR ERV1 0 1020 1 21 57 0 0 chr13 57058535 57058570 -62686328 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr13 57059713 57059741 -62685157 + AT_rich Low_complexity Low_complexity 1 28 0 189 188 0 43 chr13 57060040 57060109 -62684789 + GA-rich Low_complexity Low_complexity 3 68 0 21 0 0 0 chr13 57060554 57060575 -62684323 + AT_rich Low_complexity Low_complexity 1 21 0 1989 117 0 4 chr13 57060754 57061055 -62683843 - AluSc SINE Alu 0 302 3 25 31 0 0 chr13 57061124 57061156 -62683742 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chr13 57061541 57061585 -62683313 + AT_rich Low_complexity Low_complexity 1 44 0 225 94 0 0 chr13 57061831 57061863 -62683035 + (TTATA)n Simple_repeat Simple_repeat 1 32 0 34 84 0 0 chr13 57061910 57061993 -62682905 + AT_rich Low_complexity Low_complexity 1 83 0 23 0 0 0 chr13 57063246 57063269 -62681629 + AT_rich Low_complexity Low_complexity 1 23 0 25 90 0 0 chr13 57064510 57064577 -62680321 + AT_rich Low_complexity Low_complexity 1 67 0 797 241 49 83 chr13 57064674 57065060 -62679838 + MLT1A2 LTR MaLR 2 374 0 288 250 193 0 chr13 57066064 57066152 -62678746 + L2 LINE L2 3160 3264 -8 21 0 0 0 chr13 57067139 57067160 -62677738 + AT_rich Low_complexity Low_complexity 1 21 0 236 337 50 0 chr13 57067473 57067574 -62677324 + L2 LINE L2 3196 3301 -12 484 255 42 50 chr13 57068154 57068393 -62676505 + L1MC5 LINE L1 7249 7371 -437 188 111 28 0 chr13 57068559 57068595 -62676303 + (TA)n Simple_repeat Simple_repeat 1 37 0 3722 114 4 5 chr13 57068601 57069309 -62675589 - L1M1 LINE L1 -513 5789 5082 466 266 130 45 chr13 57069489 57069797 -62675101 - L1ME3A LINE L1 -182 5988 5655 24 0 0 0 chr13 57070224 57070248 -62674650 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr13 57070268 57070317 -62674581 + AT_rich Low_complexity Low_complexity 1 49 0 346 88 16 83 chr13 57070317 57070510 -62674388 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 251 340 119 37 chr13 57070729 57070827 -62674071 + L2 LINE L2 2109 2198 -1116 429 36 0 0 chr13 57070827 57070882 -62674016 + (TC)n Simple_repeat Simple_repeat 2 56 0 251 340 119 37 chr13 57070882 57071027 -62673871 + L2 LINE L2 2198 2372 -942 186 377 35 26 chr13 57071884 57071998 -62672900 - L2 LINE L2 -253 3019 2905 1301 159 60 8 chr13 57072039 57072290 -62672608 + MER21A LTR ERV1 1 264 -667 2527 197 77 13 chr13 57072296 57072818 -62672080 + MER21A LTR ERV1 377 931 0 225 397 65 32 chr13 57073215 57073719 -62671179 - L2 LINE L2 -904 2410 1890 800 186 39 10 chr13 57073747 57073950 -62670948 + L1M2 LINE L1 5570 5779 -395 257 351 79 26 chr13 57074108 57074222 -62670676 + L2 LINE L2 3136 3255 -17 5090 185 35 20 chr13 57074296 57074773 -62670125 + L1MA6 LINE L1 4823 5291 -1009 411 21 0 0 chr13 57074773 57074821 -62670077 + (CAT)n Simple_repeat Simple_repeat 2 49 0 5090 185 35 20 chr13 57074821 57075805 -62669093 + L1MA6 LINE L1 5291 6295 -5 23 33 0 0 chr13 57076275 57076305 -62668593 + AT_rich Low_complexity Low_complexity 1 30 0 1388 198 41 4 chr13 57077289 57077557 -62667341 - AluJb SINE Alu -30 282 5 259 287 35 35 chr13 57078280 57078367 -62666531 - L2 LINE L2 -7 3306 3220 964 196 22 6 chr13 57078428 57078607 -62666291 + MER5A DNA MER1_type 1 182 -7 2273 207 26 91 chr13 57079031 57079770 -62665128 + LTR8 LTR ERV1 1 691 0 1886 188 21 8 chr13 57079828 57080212 -62664686 + L1PA16 LINE L1 5769 6157 -9 39 22 0 0 chr13 57080212 57080258 -62664640 + AT_rich Low_complexity Low_complexity 1 46 0 290 235 121 23 chr13 57080312 57080444 -62664454 + L1ME3A LINE L1 5398 5542 -622 1397 254 26 20 chr13 57080525 57080867 -62664031 + Tigger7 DNA MER2_type 1 344 -2143 738 159 58 14 chr13 57080862 57081000 -62663898 + Tigger7 DNA MER2_type 2339 2482 -5 * 377 317 17 0 chr13 57081005 57081125 -62663773 + L1ME3A LINE L1 5630 5751 -419 221 119 24 0 chr13 57081156 57081198 -62663700 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 2055 191 84 71 chr13 57081198 57081731 -62663167 - MLT2B3 LTR ERVL -19 515 1 1125 292 44 12 chr13 57081731 57082017 -62662881 + L1ME3A LINE L1 5748 6052 -118 3022 166 38 7 chr13 57082017 57082591 -62662307 + LTR49 LTR ERV1 1 592 -3 1125 292 44 12 chr13 57082591 57082712 -62662186 + L1ME3A LINE L1 6052 6168 -2 24 67 0 0 chr13 57082826 57082871 -62662027 + AT_rich Low_complexity Low_complexity 1 45 0 832 240 34 10 chr13 57082964 57083168 -62661730 - MER20 DNA MER1_type 0 219 11 703 322 130 28 chr13 57083260 57083720 -62661178 - L2 LINE L2 0 3313 2807 226 300 152 46 chr13 57084326 57084589 -62660309 + L2 LINE L2 2949 3239 -74 264 236 56 0 chr13 57084932 57085004 -62659894 - LTR50 LTR ERVL -8 787 712 272 250 70 10 chr13 57085133 57085233 -62659665 - LTR50 LTR ERVL -194 601 496 327 294 147 38 chr13 57085281 57085465 -62659433 - LTR50 LTR ERVL -510 285 82 345 323 16 57 chr13 57085559 57085683 -62659215 - L2 LINE L2 -2 3311 3193 247 190 0 86 chr13 57085829 57085887 -62659011 + MER20 DNA MER1_type 1 53 -166 824 272 82 0 chr13 57085891 57086097 -62658801 + MER58A DNA MER1_type 1 223 -1 198 0 0 0 chr13 57086159 57086181 -62658717 + (TATG)n Simple_repeat Simple_repeat 3 24 0 21 36 0 0 chr13 57086959 57086987 -62657911 + AT_rich Low_complexity Low_complexity 1 28 0 1580 208 34 14 chr13 57087610 57087966 -62656932 + MLT1A1 LTR MaLR 1 363 -2 332 32 65 0 chr13 57088588 57088650 -62656248 + (TA)n Simple_repeat Simple_repeat 2 67 0 299 43 0 43 chr13 57088798 57088844 -62656054 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 470 174 0 51 chr13 57088846 57088944 -62655954 + L1MC2 LINE L1 5489 5581 -763 820 194 15 35 chr13 57088953 57089154 -62655744 - L1MD2 LINE L1 0 6359 6163 7738 17 0 6 chr13 57089380 57090306 -62654592 - L1PA3 LINE L1 0 6155 5231 21579 28 3 0 chr13 57090308 57092916 -62651982 + L1PA3 LINE L1 2596 5210 -936 2975 208 80 7 chr13 57092918 57093607 -62651291 + L1MC2 LINE L1 5585 6323 -21 195 250 23 0 chr13 57094189 57094233 -62650665 - L2 LINE L2 -2 3270 3226 273 203 31 16 chr13 57094254 57094318 -62650580 + GA-rich Low_complexity Low_complexity 1 65 0 2453 114 5 39 chr13 57094959 57095008 -62649890 + L1PB2 LINE L1 5753 5802 -349 414 69 0 0 chr13 57095008 57095066 -62649832 + (CA)n Simple_repeat Simple_repeat 2 59 0 2453 114 5 39 chr13 57095066 57095427 -62649471 + L1PB2 LINE L1 5802 6149 -2 197 391 65 0 chr13 57095983 57096121 -62648777 + L2 LINE L2 3117 3263 -9 21 36 0 0 chr13 57096779 57096807 -62648091 + AT_rich Low_complexity Low_complexity 1 28 0 182 150 25 0 chr13 57097490 57097530 -62647368 + (TTA)n Simple_repeat Simple_repeat 1 41 0 215 355 0 0 chr13 57100107 57100183 -62644715 + (ATGGTG)n Simple_repeat Simple_repeat 5 80 0 22 0 0 0 chr13 57100458 57100480 -62644418 + AT_rich Low_complexity Low_complexity 1 22 0 38 0 0 0 chr13 57100539 57100577 -62644321 + AT_rich Low_complexity Low_complexity 1 38 0 523 319 119 13 chr13 57100978 57101204 -62643694 + MIR SINE MIR 8 257 -5 27 73 0 0 chr13 57101390 57101445 -62643453 + AT_rich Low_complexity Low_complexity 1 55 0 24 53 0 0 chr13 57102057 57102095 -62642803 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 57102273 57102302 -62642596 + AT_rich Low_complexity Low_complexity 1 29 0 1077 205 102 7 chr13 57102593 57102951 -62641947 - L1M2 LINE L1 -743 5403 5072 2229 172 86 15 chr13 57102953 57103430 -62641468 + L1MA7 LINE L1 5779 6289 -2 374 200 0 12 chr13 57103452 57103532 -62641366 - MIR SINE MIR -19 243 165 492 266 116 17 chr13 57103632 57103805 -62641093 - MLT1J1 LTR MaLR -120 326 137 396 196 38 89 chr13 57104073 57104231 -62640667 - L1MC3 LINE L1 0 7785 7636 213 132 0 0 chr13 57105362 57105400 -62639498 + (TC)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr13 57105612 57105641 -62639257 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 57105673 57105695 -62639203 + AT_rich Low_complexity Low_complexity 1 22 0 1410 139 0 103 chr13 57107165 57107446 -62637452 - AluJo SINE Alu -49 263 12 2476 250 64 21 chr13 57107643 57108420 -62636478 + Charlie1a DNA MER1_type 1 811 -644 322 280 19 13 chr13 57108408 57108565 -62636333 + Charlie1a DNA MER1_type 1297 1454 -1 * 509 345 67 69 chr13 57109688 57110181 -62634717 + MLT1K LTR MaLR 16 507 -81 341 241 9 0 chr13 57110184 57110296 -62634602 + (TA)n Simple_repeat Simple_repeat 2 114 0 2612 231 13 7 chr13 57111333 57111951 -62632947 - L1MB5 LINE L1 -1 6173 5552 2127 125 22 52 chr13 57111955 57112265 -62632633 + THE1B LTR MaLR 9 327 -37 2029 112 4 0 chr13 57112265 57112543 -62632355 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr13 57112549 57112587 -62632311 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2127 125 22 52 chr13 57112587 57112636 -62632262 + THE1B LTR MaLR 332 364 0 6376 265 73 31 chr13 57112636 57113728 -62631170 - L1MB5 LINE L1 -633 5541 4497 183 42 0 0 chr13 57113728 57113752 -62631146 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6376 265 73 31 chr13 57113752 57115754 -62629144 - L1MB5 LINE L1 -1677 4497 2312 236 229 49 78 chr13 57115753 57115997 -62628901 + L1MEc LINE L1 2030 2266 -4130 * 225 180 74 8 chr13 57116024 57116146 -62628752 + (TA)n Simple_repeat Simple_repeat 2 131 0 778 230 36 0 chr13 57116303 57116468 -62628430 + MLT1A2 LTR MaLR 204 374 0 357 269 84 31 chr13 57116468 57116695 -62628203 + L1MEc LINE L1 3871 4109 -2106 1570 194 22 36 chr13 57116701 57117061 -62627837 + MLT2C1 LTR ERVL 3 357 -40 291 28 0 0 chr13 57117074 57117110 -62627788 + (TG)n Simple_repeat Simple_repeat 1 36 0 368 294 41 35 chr13 57117182 57117352 -62627546 + L1MEc LINE L1 4129 4299 -1916 818 189 156 4 chr13 57117394 57117637 -62627261 - MER33 DNA MER1_type -44 280 1 493 157 0 0 chr13 57118621 57118710 -62626188 - L1MA3 LINE L1 0 6305 6217 302 224 0 15 chr13 57118905 57118958 -62625940 - L1MC4 LINE L1 -1339 6703 6650 2051 110 0 50 chr13 57118958 57119259 -62625639 - AluSp SINE Alu -27 286 1 302 224 0 15 chr13 57119259 57119272 -62625626 - L1MC4 LINE L1 -1392 6650 6638 563 29 69 0 chr13 57119281 57119383 -62625515 + (TA)n Simple_repeat Simple_repeat 1 109 0 21 36 0 0 chr13 57119480 57119508 -62625390 + AT_rich Low_complexity Low_complexity 1 28 0 971 224 78 20 chr13 57120357 57120715 -62624183 - Charlie1b DNA MER1_type -3 520 142 24 0 0 0 chr13 57121408 57121432 -62623466 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr13 57121587 57121622 -62623276 + AT_rich Low_complexity Low_complexity 1 35 0 1244 201 188 20 chr13 57123620 57123964 -62620934 - MSTC LTR MaLR 0 365 1 23 0 0 0 chr13 57125446 57125469 -62619429 + AT_rich Low_complexity Low_complexity 1 23 0 205 344 51 56 chr13 57125987 57126182 -62618716 + L2 LINE L2 2607 2800 -514 182 159 175 63 chr13 57126521 57126584 -62618314 + L2 LINE L2 466 535 -2779 2334 32 0 7 chr13 57126717 57127034 -62617864 + AluY SINE Alu 1 315 0 21 0 0 0 chr13 57127034 57127055 -62617843 + AT_rich Low_complexity Low_complexity 1 21 0 545 330 62 17 chr13 57127063 57127351 -62617547 + L2 LINE L2 714 1014 -2300 494 302 73 101 chr13 57127384 57127880 -62617018 + L2 LINE L2 2832 3313 0 2501 318 74 48 chr13 57128030 57129472 -62615426 + L2 LINE L2 1208 2686 -628 2200 266 64 26 chr13 57129490 57130047 -62614851 - L1ME2 LINE L1 -19 6214 5611 772 69 0 0 chr13 57130047 57130148 -62614750 - L1PA8 LINE L1 -2 6170 6070 2200 266 64 26 chr13 57130148 57130428 -62614470 - L1ME2 LINE L1 -622 5611 5343 279 247 25 0 chr13 57130452 57130533 -62614365 - L1ME2 LINE L1 -1049 5166 5084 1097 288 95 37 chr13 57130689 57130784 -62614114 - L1ME2 LINE L1 -1198 5017 4929 1317 249 42 42 chr13 57130784 57131289 -62613609 - MLT1D LTR MaLR 0 505 1 1097 288 95 37 chr13 57131289 57131918 -62612980 - L1ME2 LINE L1 -1286 4929 4251 * 4571 195 39 36 chr13 57131914 57133219 -62611679 - L1MA10 LINE L1 0 6334 5023 879 214 6 0 chr13 57133270 57133448 -62611450 + L1 LINE L1 4832 5010 -1136 735 308 37 48 chr13 57133560 57133988 -62610910 - L1ME2 LINE L1 -4488 1793 1402 2288 116 3 0 chr13 57133988 57134299 -62610599 - AluSx SINE Alu 0 312 1 735 308 37 48 chr13 57134299 57134428 -62610470 - L1ME2 LINE L1 -4879 1402 1273 2857 3 0 0 chr13 57135101 57135440 -62609458 - AluYa5 SINE Alu 0 339 1 2051 152 0 0 chr13 57135943 57136240 -62608658 + AluSx SINE Alu 1 297 -15 21 36 0 0 chr13 57136905 57136933 -62607965 + AT_rich Low_complexity Low_complexity 1 28 0 572 230 0 24 chr13 57137379 57137505 -62607393 + FLAM_A SINE Alu 1 123 -10 279 0 0 0 chr13 57138645 57138676 -62606222 + (TG)n Simple_repeat Simple_repeat 2 32 0 604 129 7 114 chr13 57139006 57139146 -62605752 + LTR7 LTR ERV1 1 125 -325 872 193 64 20 chr13 57139323 57139525 -62605373 + LTR7 LTR ERV1 238 448 -2 2459 59 0 13 chr13 57140189 57140492 -62604406 - AluY SINE Alu -12 299 1 22 0 0 0 chr13 57140617 57140639 -62604259 + AT_rich Low_complexity Low_complexity 1 22 0 1748 194 53 31 chr13 57141050 57141593 -62603305 + MLT2A2 LTR ERVL 1 554 0 11985 184 49 18 chr13 57142771 57144762 -62600136 + L1M1 LINE L1 14 2832 -4733 5814 19 0 0 chr13 57144762 57145429 -62599469 + L1PA3 LINE L1 5489 6155 0 11985 184 49 18 chr13 57145429 57146475 -62598423 + L1M1 LINE L1 2832 3843 -3722 7935 183 17 7 chr13 57146471 57148463 -62596435 + L1M1 LINE L1 5091 7105 -616 * 253 157 0 0 chr13 57148457 57148508 -62596390 + L1MA3 LINE L1 6249 6299 -6 * 860 273 38 64 chr13 57150787 57151286 -62593612 - HAL1 LINE L1 -757 1750 1265 31 0 0 0 chr13 57151317 57151348 -62593550 + AT_rich Low_complexity Low_complexity 1 31 0 300 307 90 69 chr13 57151551 57151883 -62593015 - HAL1 LINE L1 -1640 867 529 248 259 52 111 chr13 57152113 57152383 -62592515 - HAL1 LINE L1 -2154 353 100 1953 128 7 0 chr13 57152899 57153225 -62591673 - AluSq SINE Alu 0 328 1 255 339 37 0 chr13 57153316 57153425 -62591473 + L2 LINE L2 2595 2707 -607 768 280 18 0 chr13 57153525 57153693 -62591205 + MER45A DNA AcHobo 8 178 0 337 295 11 0 chr13 57153697 57153792 -62591106 + MIR SINE MIR 161 256 -6 206 174 0 22 chr13 57153799 57153845 -62591053 + (TTA)n Simple_repeat Simple_repeat 1 45 0 522 319 37 11 chr13 57154990 57155182 -62589716 + MIR SINE MIR 34 228 -34 29 84 0 0 chr13 57155787 57155858 -62589040 + AT_rich Low_complexity Low_complexity 1 71 0 1013 82 0 15 chr13 57156126 57156261 -62588637 + AluY SINE Alu 1 133 -178 2268 66 0 7 chr13 57157079 57157368 -62587530 - AluY SINE Alu -11 300 14 597 200 0 0 chr13 57158173 57158283 -62586615 - FLAM_A SINE Alu -9 133 24 2501 51 0 0 chr13 57158511 57158806 -62586092 + AluY SINE Alu 1 295 -16 957 223 33 0 chr13 57159005 57159189 -62585709 + L1PA16 LINE L1 13 202 -6647 * 12388 217 30 13 chr13 57159187 57161571 -62583327 + L1PA16 LINE L1 958 3298 -3579 7129 153 17 1 chr13 57161571 57163555 -62581343 + L1PA10 LINE L1 4150 6156 -12 12388 217 30 13 chr13 57163555 57167020 -62577878 + L1PA16 LINE L1 3298 6877 0 1348 176 33 9 chr13 57167227 57167562 -62577336 + Tigger4(Zombi) DNA MER2_type 1 2729 -2 1508 201 0 33 chr13 57167698 57168002 -62576896 + AluJb SINE Alu 1 294 -18 1191 123 10 15 chr13 57168181 57168385 -62576513 - L1PB2 LINE L1 0 6151 5949 4105 201 6 3 chr13 57168385 57169253 -62575645 - L1 LINE L1 -3167 2979 2110 6629 142 32 11 chr13 57169258 57170488 -62574410 - L1PBa LINE L1 -4094 2769 1513 3207 101 30 4 chr13 57170493 57170968 -62573930 - LTR15 LTR ERV1 -6 487 1 899 225 106 19 chr13 57170968 57172134 -62572764 - L1PBa LINE L1 -5346 1517 105 28 29 0 0 chr13 57172299 57172334 -62572564 + AT_rich Low_complexity Low_complexity 1 35 0 1603 132 8 4 chr13 57173430 57173672 -62571226 + AluSq SINE Alu 41 283 -30 360 59 0 0 chr13 57173675 57173726 -62571172 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3282 89 13 0 chr13 57173851 57174298 -62570600 + MLT2A2 LTR ERVL 1 453 0 315 329 103 14 chr13 57174633 57174779 -62570119 - MIR SINE MIR -29 233 75 1489 129 20 27 chr13 57174897 57175253 -62569645 - Tigger2 DNA MER2_type -38 2680 2281 358 200 0 0 chr13 57175257 57175322 -62569576 - Tigger2 DNA MER2_type -2653 65 1 * 565 250 125 18 chr13 57175322 57175545 -62569353 + MER2 DNA MER2_type 97 343 -2 761 198 94 68 chr13 57175651 57175959 -62568939 + MER33 DNA MER1_type 5 320 -4 2243 104 0 3 chr13 57176213 57176520 -62568378 - AluSc SINE Alu -3 306 1 21 0 0 0 chr13 57176762 57176783 -62568115 + AT_rich Low_complexity Low_complexity 1 21 0 403 218 102 80 chr13 57177950 57178175 -62566723 - L1MC5 LINE L1 -424 7537 7308 344 294 0 0 chr13 57178615 57178707 -62566191 - L2 LINE L2 -6 3307 3216 661 49 0 39 chr13 57178841 57178943 -62565955 - AluY SINE Alu 0 311 214 22 35 0 0 chr13 57179111 57179140 -62565758 + AT_rich Low_complexity Low_complexity 1 29 0 26 98 0 0 chr13 57179628 57179710 -62565188 + AT_rich Low_complexity Low_complexity 1 82 0 215 179 0 0 chr13 57182633 57182672 -62562226 + L2 LINE L2 3272 3310 -3 500 85 12 37 chr13 57183153 57183235 -62561663 + MADE1 DNA Mariner 1 80 0 290 213 12 25 chr13 57183240 57183320 -62561578 - LTR67 LTR ERVL -6 551 473 24 32 0 0 chr13 57184567 57184598 -62560300 + AT_rich Low_complexity Low_complexity 1 31 0 1784 163 14 94 chr13 57184609 57185033 -62559865 - MLT1B LTR MaLR 0 390 1 219 273 0 18 chr13 57185076 57185131 -62559767 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 268 183 141 0 chr13 57186370 57186441 -62558457 + L1ME4a LINE L1 6012 6092 -29 624 128 49 0 chr13 57186470 57186572 -62558326 - THE1C LTR MaLR -19 356 250 2076 114 7 17 chr13 57188125 57188424 -62556474 + AluSg SINE Alu 1 296 -14 180 0 0 0 chr13 57188527 57188547 -62556351 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1777 309 120 46 chr13 57189769 57189935 -62554963 - L2 LINE L2 0 3313 3161 204 111 0 0 chr13 57189935 57189971 -62554927 + (TG)n Simple_repeat Simple_repeat 1 36 0 1777 309 120 46 chr13 57189971 57191029 -62553869 - L2 LINE L2 -152 3161 2042 183 122 54 27 chr13 57191050 57191124 -62553774 + (TTATA)n Simple_repeat Simple_repeat 1 76 0 24 67 0 0 chr13 57191131 57191176 -62553722 + AT_rich Low_complexity Low_complexity 1 45 0 453 288 137 66 chr13 57192152 57192562 -62552336 + MLT1K LTR MaLR 36 474 -114 7261 40 0 1 chr13 57192626 57194084 -62550814 - L1PA5 LINE L1 0 6154 4699 265 325 98 24 chr13 57194661 57194784 -62550114 + L3 LINE CR1 1285 1416 -161 333 274 32 11 chr13 57194992 57195087 -62549811 - MIR SINE MIR -109 153 57 29 47 0 0 chr13 57195283 57195326 -62549572 + AT_rich Low_complexity Low_complexity 1 43 0 431 256 196 20 chr13 57195794 57195993 -62548905 + MIR SINE MIR 8 241 -21 296 300 175 0 chr13 57198784 57198944 -62545954 - MIR SINE MIR -44 218 31 2394 218 55 15 chr13 57199720 57200320 -62544578 + MLT1E3 LTR MaLR 1 624 0 28 0 0 0 chr13 57200463 57200491 -62544407 + AT_rich Low_complexity Low_complexity 1 28 0 1814 188 27 3 chr13 57201037 57201373 -62543525 + MER2 DNA MER2_type 1 344 0 288 0 0 0 chr13 57201380 57201412 -62543486 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 128 6 0 chr13 57201486 57201541 -62543357 + AluY SINE Alu 1 40 -262 1575 97 0 0 chr13 57201543 57201749 -62543149 + AluY SINE Alu 92 297 -14 1727 161 73 14 chr13 57201919 57202273 -62542625 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr13 57202368 57202399 -62542499 + AT_rich Low_complexity Low_complexity 1 31 0 953 245 10 10 chr13 57202717 57202925 -62541973 + MER45C DNA AcHobo 1 208 -745 480 284 130 50 chr13 57202940 57203179 -62541719 + MER45C DNA AcHobo 695 952 -1 212 309 36 36 chr13 57203741 57203825 -62541073 - MIR3 SINE MIR -37 171 88 226 282 35 35 chr13 57204537 57204622 -62540276 - L2 LINE L2 -4 3309 3225 387 307 33 40 chr13 57205186 57205336 -62539562 + MIR SINE MIR 20 168 -94 344 239 128 26 chr13 57205683 57205800 -62539098 - MIR3 SINE MIR -76 132 4 1666 194 137 3 chr13 57205997 57206378 -62538520 - MSTB1 LTR MaLR 0 432 1 422 275 56 31 chr13 57206478 57206638 -62538260 + MLT1L LTR MaLR 153 316 -299 252 59 0 0 chr13 57207002 57207036 -62537862 + (TA)n Simple_repeat Simple_repeat 1 34 0 220 225 141 14 chr13 57207172 57207243 -62537655 + L2 LINE L2 2664 2743 -571 386 255 20 60 chr13 57207273 57207422 -62537476 - MER5B DNA MER1_type 0 178 36 256 269 67 58 chr13 57207430 57207534 -62537364 - MER5B DNA MER1_type -68 110 6 250 315 0 0 chr13 57207776 57207849 -62537049 - MLT1J LTR MaLR -324 187 115 602 284 47 58 chr13 57208252 57208509 -62536389 + MIR SINE MIR 3 256 -6 845 328 37 32 chr13 57209712 57210114 -62534784 + L1M3d LINE L1 1 404 -5487 287 360 20 39 chr13 57210200 57210353 -62534545 + L1M3d LINE L1 523 672 -5219 28 0 0 0 chr13 57210447 57210475 -62534423 + AT_rich Low_complexity Low_complexity 1 28 0 639 272 179 41 chr13 57210491 57210628 -62534270 + L1M3d LINE L1 664 781 -5120 553 235 43 0 chr13 57210628 57210743 -62534155 - FLAM_A SINE Alu -12 121 2 639 272 179 41 chr13 57210743 57211163 -62533735 + L1M3d LINE L1 781 1298 -4603 * 12446 83 4 1 chr13 57211158 57213640 -62531258 + L1PA7 LINE L1 3640 6124 -30 918 237 48 71 chr13 57213650 57214042 -62530856 + L1MB1 LINE L1 1493 1875 -4509 728 261 85 24 chr13 57214408 57214957 -62529941 + L1MB1 LINE L1 1979 2562 -3820 12632 41 0 19 chr13 57214957 57216834 -62528064 - L1PA5 LINE L1 -486 5668 3827 4005 44 2 0 chr13 57216834 57217326 -62527572 + L1PA5 LINE L1 5648 6143 -11 25 31 0 0 chr13 57217340 57217372 -62527526 + AT_rich Low_complexity Low_complexity 1 32 0 2194 259 66 16 chr13 57217385 57218202 -62526696 + L1MB1 LINE L1 2551 3408 -2974 * 6309 201 20 14 chr13 57218194 57219629 -62525269 + L1MB1 LINE L1 3800 5243 -1139 2560 14 0 0 chr13 57219619 57219909 -62524989 + L1HS LINE L1 5855 6144 -11 * 244 229 0 0 chr13 57219920 57219981 -62524917 + A-rich Low_complexity Low_complexity 1 61 0 3034 206 39 51 chr13 57219981 57221165 -62523733 + L1MB1 LINE L1 5228 6395 -9 593 279 115 32 chr13 57221250 57221562 -62523336 + L1 LINE L1 2110 2447 -3699 * 613 119 19 132 chr13 57221561 57221720 -62523178 + L1MB1 LINE L1 6028 6168 0 201 266 43 0 chr13 57222124 57222218 -62522680 + (AATAG)n Simple_repeat Simple_repeat 3 100 0 278 276 0 0 chr13 57222650 57222726 -62522172 + MER69 DNA AcHobo 2442 2517 -9 392 258 65 0 chr13 57223483 57223638 -62521260 + MER112 DNA MER1_type 90 254 -6 707 224 7 0 chr13 57223883 57224026 -62520872 - MER58A DNA MER1_type -35 189 46 295 283 76 43 chr13 57224062 57224246 -62520652 + L2 LINE L2 3113 3302 -11 486 306 35 0 chr13 57224246 57224416 -62520482 - MER110 LTR ERV1 0 491 316 333 0 0 0 chr13 57224435 57224472 -62520426 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 2222 201 66 4 chr13 57224472 57225004 -62519894 - L1MD2 LINE L1 -16 6343 5780 274 243 29 14 chr13 57225252 57225322 -62519576 + L2 LINE L2 3243 3313 0 26 30 0 0 chr13 57225336 57225369 -62519529 + AT_rich Low_complexity Low_complexity 1 33 0 180 387 42 17 chr13 57225469 57225588 -62519310 + MIR3 SINE MIR 86 207 -1 374 183 0 0 chr13 57225632 57225703 -62519195 - L1MD3 LINE L1 -3 7992 7922 1743 224 75 5 chr13 57225731 57226160 -62518738 - L1MD2 LINE L1 -517 5842 5384 392 250 17 42 chr13 57226160 57226280 -62518618 - MER110 LTR ERV1 -186 305 189 1463 102 0 5 chr13 57226280 57226495 -62518403 + L1PA7 LINE L1 5780 5993 -161 7254 32 2 0 chr13 57226538 57228063 -62516835 + L1PA5 LINE L1 4634 6159 0 325 304 27 0 chr13 57228067 57228179 -62516719 - MER110 LTR ERV1 -318 173 59 2151 65 0 4 chr13 57228379 57228654 -62516244 + AluY SINE Alu 3 276 -35 206 293 0 0 chr13 57228882 57228940 -62515958 + MIR SINE MIR 41 98 -164 2142 158 6 0 chr13 57228975 57229330 -62515568 - L1P LINE L1 -1838 4308 3952 25 0 0 0 chr13 57229330 57229355 -62515543 + AT_rich Low_complexity Low_complexity 1 25 0 338 278 196 0 chr13 57229434 57229567 -62515331 + L1ME LINE L1 5526 5684 -437 2253 87 7 10 chr13 57229593 57229892 -62515006 - AluSx SINE Alu -14 298 1 285 257 100 0 chr13 57229907 57229977 -62514921 + L2 LINE L2 3197 3273 -40 731 139 16 8 chr13 57229990 57230112 -62514786 + L1P4 LINE L1 5578 5700 -468 990 107 13 0 chr13 57230114 57230263 -62514635 + L1P4 LINE L1 5668 5818 -350 23 0 0 0 chr13 57230992 57231015 -62513883 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 57231215 57231244 -62513654 + AT_rich Low_complexity Low_complexity 1 29 0 558 0 0 0 chr13 57231426 57231488 -62513410 + (CA)n Simple_repeat Simple_repeat 1 62 0 242 216 14 0 chr13 57232109 57232183 -62512715 + CT-rich Low_complexity Low_complexity 3 77 0 1542 236 25 63 chr13 57233414 57233819 -62511079 + MLT1D LTR MaLR 1 383 -122 1555 228 22 6 chr13 57233819 57234175 -62510723 - MLT1A1 LTR MaLR -2 363 2 1542 236 25 63 chr13 57234175 57234291 -62510607 + MLT1D LTR MaLR 383 502 -3 428 332 101 33 chr13 57234556 57234951 -62509947 - L1M4 LINE L1 -1704 4442 4021 532 272 91 59 chr13 57235297 57235804 -62509094 - HAL1b LINE L1 -607 741 219 31 0 0 0 chr13 57236664 57236695 -62508203 + AT_rich Low_complexity Low_complexity 1 31 0 34 65 0 0 chr13 57236962 57237024 -62507874 + AT_rich Low_complexity Low_complexity 1 62 0 2421 94 13 24 chr13 57237084 57237457 -62507441 - L1PB1 LINE L1 -1 6150 5782 3719 110 10 12 chr13 57237504 57237525 -62507373 - L1PB1 LINE L1 -356 5795 5775 488 48 48 0 chr13 57237525 57237609 -62507289 + (TA)n Simple_repeat Simple_repeat 2 89 0 3719 110 10 12 chr13 57237609 57238269 -62506629 - L1PB1 LINE L1 -376 5775 5116 52 69 0 0 chr13 57238816 57238917 -62505981 + AT_rich Low_complexity Low_complexity 1 101 0 487 311 45 11 chr13 57239568 57239880 -62505018 - LTR16A LTR ERVL -38 412 65 956 252 92 31 chr13 57240439 57240941 -62503957 - MER76 LTR ERV -39 649 1 1151 335 69 49 chr13 57240986 57241067 -62503831 - MERVL LTR ERVL -597 4888 4810 1806 185 3 57 chr13 57241067 57241435 -62503463 + MER7A DNA MER2_type 1 346 0 1151 335 69 49 chr13 57241435 57243014 -62501884 - MERVL LTR ERVL -675 4810 3195 1185 316 45 68 chr13 57243092 57243900 -62500998 - MERVL LTR ERVL -2079 2917 2129 252 273 13 26 chr13 57244033 57244110 -62500788 - MERVL LTR ERVL -3696 1958 1883 2037 156 58 14 chr13 57244772 57245189 -62499709 - L1MA9 LINE L1 0 6312 5878 898 291 81 31 chr13 57245492 57245815 -62499083 + LTR40a LTR ERVL 4 342 -177 289 239 15 0 chr13 57245816 57245883 -62499015 - MLT1E LTR MaLR -7 647 580 766 303 32 104 chr13 57245893 57246066 -62498832 - MLT1E LTR MaLR -182 411 227 468 51 0 0 chr13 57246066 57246125 -62498773 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 766 303 32 104 chr13 57246125 57246394 -62498504 - MLT1E LTR MaLR -366 227 1 973 167 17 6 chr13 57246399 57246573 -62498325 + LTR40a LTR ERVL 344 519 0 23 0 0 0 chr13 57247756 57247779 -62497119 + AT_rich Low_complexity Low_complexity 1 23 0 214 175 0 48 chr13 57248081 57248144 -62496754 + GA-rich Low_complexity Low_complexity 4 63 0 765 254 6 12 chr13 57248154 57248327 -62496571 + MER63A DNA MER1_type 39 210 0 2668 174 80 28 chr13 57248979 57249594 -62495304 - L1MA4 LINE L1 -8 6292 5646 309 291 179 0 chr13 57250474 57250591 -62494307 + MIR3 SINE MIR 67 204 -4 410 258 0 0 chr13 57250800 57250893 -62494005 + MLT1J1 LTR MaLR 11 103 -343 21 0 0 0 chr13 57251371 57251392 -62493506 + AT_rich Low_complexity Low_complexity 1 21 0 223 180 0 49 chr13 57251803 57251849 -62493049 + GA-rich Low_complexity Low_complexity 4 48 -13 1839 139 0 78 chr13 57251849 57252180 -62492718 + AluSx SINE Alu 1 305 -7 223 180 0 49 chr13 57252180 57252194 -62492704 + GA-rich Low_complexity Low_complexity 48 61 0 190 56 56 0 chr13 57252458 57252494 -62492404 + (TA)n Simple_repeat Simple_repeat 1 38 0 1000 344 46 11 chr13 57252534 57252967 -62491931 + L1M4b LINE L1 33 480 -6379 391 160 0 160 chr13 57252974 57253093 -62491805 + L1M4b LINE L1 1260 1359 -5500 1292 230 34 11 chr13 57253115 57253510 -62491388 + L1M4b LINE L1 1314 1712 -5143 1541 245 34 21 chr13 57253515 57253895 -62491003 - MER70A LTR ERVL 0 472 88 887 147 0 73 chr13 57253885 57254062 -62490836 - MER70B LTR ERVL -414 164 1 * 1143 265 53 20 chr13 57254062 57254708 -62490190 + L1M4b LINE L1 1707 2717 -4241 2946 271 54 38 chr13 57254897 57256720 -62488178 + L1M4 LINE L1 1731 3544 -2671 397 185 93 63 chr13 57256713 57256918 -62487980 + L1M4 LINE L1 3931 4141 -2074 * 382 271 16 8 chr13 57256919 57257048 -62487850 + L1M4 LINE L1 4272 4401 -1814 676 210 44 34 chr13 57257098 57257303 -62487595 + L1MA7 LINE L1 6083 6289 -2 2351 241 42 34 chr13 57257309 57258689 -62486209 + L1M4 LINE L1 4381 5770 -483 1471 272 44 48 chr13 57258724 57259224 -62485674 + MER21B LTR ERV1 22 519 -344 464 329 47 57 chr13 57259555 57259866 -62485032 + MLT1H LTR MaLR 127 434 -115 1731 199 75 94 chr13 57259866 57259943 -62484955 + MER67C LTR ERV1 1 78 -632 2141 117 0 22 chr13 57259943 57260259 -62484639 + AluSx SINE Alu 1 309 -3 1731 199 75 94 chr13 57260259 57260903 -62483995 + MER67C LTR ERV1 78 708 -2 464 329 47 57 chr13 57260903 57261016 -62483882 + MLT1H LTR MaLR 434 547 -2 1704 199 42 154 chr13 57261021 57261826 -62483072 - LTR8A LTR ERV1 0 727 1 10263 199 89 82 chr13 57261864 57266718 -62478180 - HUERS-P1 LTR ERV1 -33 6230 768 2897 191 32 114 chr13 57266715 57267591 -62477307 - HUERS-P1 LTR ERV1 -4461 1485 361 * 211 161 18 18 chr13 57267650 57267706 -62477192 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 393 317 24 37 chr13 57267985 57268149 -62476749 - HUERS-P1 LTR ERV1 -6101 162 1 1911 196 42 154 chr13 57268149 57268930 -62475968 - LTR8A LTR ERV1 0 727 34 348 264 7 42 chr13 57268958 57269102 -62475796 - L1MC5 LINE L1 -38 7923 7785 1389 192 0 12 chr13 57269272 57269522 -62475376 - AluSx SINE Alu -15 297 51 3644 147 43 8 chr13 57270087 57270718 -62474180 - MER39B LTR ERV1 0 653 1 288 241 0 0 chr13 57270893 57270972 -62473926 + (CA)n Simple_repeat Simple_repeat 2 80 0 1132 264 188 41 chr13 57272736 57273274 -62471624 - MLT1E2 LTR MaLR -9 617 1 257 363 81 0 chr13 57273644 57273768 -62471130 + MER5A DNA MER1_type 56 189 0 2418 166 60 20 chr13 57273827 57274374 -62470524 + L1MA8 LINE L1 3997 4565 -1581 1339 269 52 11 chr13 57274374 57274742 -62470156 + MSTD LTR MaLR 1 383 -13 5104 164 42 14 chr13 57274744 57276395 -62468503 + L1MA8 LINE L1 4572 6271 -20 42 48 0 0 chr13 57276395 57276458 -62468440 + AT_rich Low_complexity Low_complexity 1 63 0 592 261 18 78 chr13 57278645 57278945 -62465953 + LTR16A1 LTR ERVL 189 457 0 228 302 189 9 chr13 57279293 57279399 -62465499 - L2 LINE L2 -199 3073 2949 1424 111 5 0 chr13 57279446 57279661 -62465237 - AluSg/x SINE Alu 0 311 96 22 35 0 0 chr13 57280354 57280383 -62464515 + AT_rich Low_complexity Low_complexity 1 29 0 506 111 0 0 chr13 57281770 57281842 -62463056 - MSTA LTR MaLR 0 428 357 570 101 0 0 chr13 57281842 57281921 -62462977 + AluY SINE Alu 18 96 -215 254 326 65 7 chr13 57282500 57282638 -62462260 - MIR SINE MIR -30 232 87 2677 160 25 28 chr13 57282794 57283297 -62461601 - L1MA4 LINE L1 -14 6286 5784 1960 157 0 6 chr13 57283297 57283610 -62461288 - AluSx SINE Alu -1 311 1 2677 160 25 28 chr13 57283610 57283636 -62461262 - L1MA4 LINE L1 -516 5784 5759 21 0 0 0 chr13 57284234 57284255 -62460643 + AT_rich Low_complexity Low_complexity 1 21 0 362 344 16 0 chr13 57284755 57284883 -62460015 - L2 LINE L2 -4 3309 3180 770 280 61 51 chr13 57284914 57285307 -62459591 - MLT1I LTR MaLR -8 401 5 1087 235 24 4 chr13 57285368 57285623 -62459275 + AluJo SINE Alu 1 260 -52 783 104 17 9 chr13 57285687 57285802 -62459096 + MLT1E LTR MaLR 20 135 -458 718 232 107 6 chr13 57285804 57285972 -62458926 - MLT1A2 LTR MaLR 0 374 190 599 306 5 21 chr13 57286054 57286240 -62458658 - MLT1A2 LTR MaLR -191 183 1 * 1571 242 96 16 chr13 57286240 57286672 -62458226 + MLT1E LTR MaLR 127 593 0 1187 289 60 31 chr13 57286760 57287178 -62457720 + MER70B LTR ERVL 1 430 -148 25 0 0 0 chr13 57287464 57287489 -62457409 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 57287559 57287587 -62457311 + AT_rich Low_complexity Low_complexity 1 28 0 418 222 87 16 chr13 57287747 57287873 -62457025 - MLT1H LTR MaLR -4 545 411 365 239 0 0 chr13 57287945 57288016 -62456882 - AluJ/FLAM SINE Alu -223 79 9 1324 186 3 3 chr13 57288117 57288412 -62456486 - L1MA4 LINE L1 -3 6297 6003 210 37 0 0 chr13 57288833 57288860 -62456038 + (TTAG)n Simple_repeat Simple_repeat 2 28 0 2159 69 28 10 chr13 57288860 57289139 -62455759 - AluY SINE Alu -24 287 1 198 367 0 0 chr13 57289174 57289253 -62455645 - MIR SINE MIR -74 188 110 435 261 85 0 chr13 57289360 57289490 -62455408 + MLT1I LTR MaLR 81 221 -188 360 293 30 42 chr13 57289554 57289721 -62455177 + MLT1I LTR MaLR 245 409 0 235 315 41 0 chr13 57289721 57289794 -62455104 - MIR SINE MIR -185 77 2 2053 102 7 16 chr13 57289820 57290123 -62454775 - AluSx SINE Alu -12 300 1 181 243 0 0 chr13 57290650 57290687 -62454211 - MIR SINE MIR -6 256 220 228 250 0 0 chr13 57292286 57292302 -62452596 + MER3 DNA MER1_type 33 48 -161 238 232 0 0 chr13 57292302 57292358 -62452540 - MER3 DNA MER1_type -1 208 153 195 100 0 0 chr13 57292853 57292883 -62452015 + (CA)n Simple_repeat Simple_repeat 1 30 0 1571 189 43 0 chr13 57292884 57293206 -62451692 + MER44D DNA MER2_type 4 609 0 221 209 60 0 chr13 57293206 57293273 -62451625 + (TA)n Simple_repeat Simple_repeat 1 71 0 1075 346 22 7 chr13 57293802 57294215 -62450683 + LTR16A LTR ERVL 25 443 -7 475 308 23 6 chr13 57294269 57294441 -62450457 + MIR SINE MIR 75 249 -13 29 60 0 0 chr13 57295432 57295482 -62449416 + AT_rich Low_complexity Low_complexity 1 50 0 218 234 21 0 chr13 57296427 57296474 -62448424 + MIR SINE MIR 96 143 -119 237 65 0 0 chr13 57296650 57296681 -62448217 + (T)n Simple_repeat Simple_repeat 1 31 0 288 0 0 0 chr13 57296681 57296713 -62448185 + (TG)n Simple_repeat Simple_repeat 1 32 0 2147 160 2 90 chr13 57296713 57297157 -62447741 - LTR8 LTR ERV1 -106 585 181 219 331 24 48 chr13 57297176 57297300 -62447598 + MIR SINE MIR 142 262 0 249 33 0 0 chr13 57298468 57298498 -62446400 + (TC)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr13 57298497 57298523 -62446375 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1955 184 54 7 chr13 57298526 57298933 -62445965 + MSTB LTR MaLR 1 426 0 390 301 201 9 chr13 57300432 57300661 -62444237 - L2 LINE L2 -165 3148 2876 1344 201 27 133 chr13 57300776 57300999 -62443899 + MSTD LTR MaLR 1 155 -241 3012 154 71 4 chr13 57300999 57301537 -62443361 + L1PA16 LINE L1 5591 6164 -2 1344 201 27 133 chr13 57301537 57301756 -62443142 + MSTD LTR MaLR 155 396 0 187 409 17 9 chr13 57302693 57302808 -62442090 - L2 LINE L2 -332 2940 2825 22 0 0 0 chr13 57303035 57303057 -62441841 + AT_rich Low_complexity Low_complexity 1 22 0 13419 228 31 21 chr13 57303280 57305570 -62439328 - L1PA16 LINE L1 -9 7595 5329 1420 221 10 17 chr13 57305570 57305868 -62439030 - AluJb SINE Alu -16 296 1 13419 228 31 21 chr13 57305868 57308746 -62436152 - L1PA16 LINE L1 -2275 5329 2354 15511 176 38 12 chr13 57308754 57309070 -62435828 - L1PB2 LINE L1 -37 6830 6524 414 39 0 0 chr13 57309070 57309122 -62435776 + (TG)n Simple_repeat Simple_repeat 2 53 0 15511 176 38 12 chr13 57309122 57309549 -62435349 - L1PB2 LINE L1 -343 6524 6110 1534 214 7 0 chr13 57309549 57309866 -62435032 - AluSx SINE Alu 0 319 1 15511 176 38 12 chr13 57309866 57315751 -62429147 - L1PB2 LINE L1 -757 6110 1 316 214 29 64 chr13 57315770 57315910 -62428988 - L1PA16 LINE L1 -5217 2364 2230 253 316 32 0 chr13 57316168 57316263 -62428635 - L1PA16 LINE L1 -5399 2182 2085 621 342 18 44 chr13 57316552 57317002 -62427896 - L1PA16 LINE L1 -6349 1225 788 21 36 0 0 chr13 57317209 57317237 -62427661 + AT_rich Low_complexity Low_complexity 1 28 0 300 27 0 0 chr13 57317887 57317924 -62426974 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr13 57317923 57317959 -62426939 + (CA)n Simple_repeat Simple_repeat 1 36 0 196 347 195 20 chr13 57319169 57319722 -62425176 + L2 LINE L2 1788 2437 -877 954 172 75 0 chr13 57319763 57319949 -62424949 + L1PA16 LINE L1 5964 6163 -3 2682 167 6 62 chr13 57320018 57320425 -62424473 + LTR44 LTR ERV1 1 371 -148 5029 52 2 0 chr13 57320425 57321055 -62423843 + L1PA5 LINE L1 5524 6154 0 2682 167 6 62 chr13 57321055 57321197 -62423701 + LTR44 LTR ERV1 371 519 0 186 370 134 0 chr13 57321201 57321328 -62423570 + L2 LINE L2 2596 2739 -575 22 0 0 0 chr13 57321671 57321693 -62423205 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr13 57323083 57323127 -62421771 + AT_rich Low_complexity Low_complexity 1 44 0 1267 294 96 12 chr13 57323547 57324057 -62420841 - MLT1H1 LTR MaLR -2 553 1 21 36 0 0 chr13 57325694 57325722 -62419176 + AT_rich Low_complexity Low_complexity 1 28 0 366 260 117 96 chr13 57326177 57326326 -62418572 - L1M4 LINE L1 -2169 3977 3833 2054 111 0 14 chr13 57326326 57326623 -62418275 - AluSc SINE Alu -16 293 1 366 260 117 96 chr13 57326623 57326850 -62418048 - L1M4 LINE L1 -2313 3833 3593 21 0 0 0 chr13 57326852 57326873 -62418025 + AT_rich Low_complexity Low_complexity 1 21 0 220 250 13 13 chr13 57327207 57327283 -62417615 + T-rich Low_complexity Low_complexity 4 79 0 1891 153 0 20 chr13 57327682 57327983 -62416915 - AluSx SINE Alu -15 297 3 345 100 0 0 chr13 57329394 57329444 -62415454 + (TA)n Simple_repeat Simple_repeat 1 50 0 222 284 302 18 chr13 57329797 57329966 -62414932 + MIR SINE MIR 46 262 0 4963 165 25 4 chr13 57330670 57331591 -62413307 - L1MA6 LINE L1 0 6300 5361 1320 200 0 31 chr13 57331637 57331897 -62413001 + AluJb SINE Alu 54 305 -7 1474 174 34 27 chr13 57333122 57333415 -62411483 + AluJo SINE Alu 1 295 -17 1594 113 5 0 chr13 57333434 57333655 -62411243 + AluSq SINE Alu 1 222 -91 279 0 0 0 chr13 57333773 57333804 -62411094 + (CA)n Simple_repeat Simple_repeat 2 32 0 649 137 0 8 chr13 57334004 57334169 -62410729 + AluSg/x SINE Alu 177 312 0 629 270 40 0 chr13 57334311 57334511 -62410387 + L1MEc LINE L1 764 971 -5425 301 258 0 0 chr13 57334524 57334586 -62410312 + MER96 DNA MER1_type? 114 175 0 356 231 0 46 chr13 57334587 57334717 -62410181 + L1MEc LINE L1 991 1114 -5282 25 31 0 0 chr13 57334827 57334859 -62410039 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr13 57337785 57337809 -62407089 + AT_rich Low_complexity Low_complexity 1 24 0 1031 181 5 11 chr13 57338464 57338652 -62406246 + MER58A DNA MER1_type 37 223 -1 216 136 17 51 chr13 57339635 57339694 -62405204 + (TTAAA)n Simple_repeat Simple_repeat 5 61 0 2784 13 0 0 chr13 57340513 57340823 -62404075 - AluYb8 SINE Alu -8 310 1 1490 176 86 0 chr13 57341184 57341462 -62403436 + AluJb SINE Alu 3 304 -8 635 269 40 17 chr13 57341765 57341940 -62402958 - MER46C DNA MER2_type -58 280 102 186 321 0 0 chr13 57342066 57342119 -62402779 - L2 LINE L2 -5 3308 3256 441 0 0 0 chr13 57342557 57342606 -62402292 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 68 0 0 chr13 57346444 57346488 -62398410 + AT_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr13 57346736 57346777 -62398121 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr13 57346888 57346909 -62397989 + AT_rich Low_complexity Low_complexity 1 21 0 202 212 30 15 chr13 57347091 57347157 -62397741 + (TA)n Simple_repeat Simple_repeat 1 67 0 25 31 0 0 chr13 57347218 57347250 -62397648 + AT_rich Low_complexity Low_complexity 1 32 0 198 386 15 23 chr13 57347336 57347468 -62397430 + MIR SINE MIR 1 131 -131 21 36 0 0 chr13 57350072 57350100 -62394798 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr13 57351200 57351240 -62393658 + (TA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr13 57351240 57351260 -62393638 + (T)n Simple_repeat Simple_repeat 1 20 0 24 67 0 0 chr13 57352372 57352417 -62392481 + AT_rich Low_complexity Low_complexity 1 45 0 37 62 0 0 chr13 57352909 57352974 -62391924 + AT_rich Low_complexity Low_complexity 1 65 0 2281 96 3 3 chr13 57353127 57353430 -62391468 + AluSx SINE Alu 1 303 -9 302 101 58 0 chr13 57355880 57355949 -62388949 + (TG)n Simple_repeat Simple_repeat 2 74 0 252 0 0 0 chr13 57356131 57356159 -62388739 + (TG)n Simple_repeat Simple_repeat 2 29 0 212 211 19 0 chr13 57356647 57356699 -62388199 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 36 0 0 chr13 57357576 57357604 -62387294 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr13 57360751 57360785 -62384113 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 57362352 57362373 -62382525 + AT_rich Low_complexity Low_complexity 1 21 0 955 113 7 0 chr13 57367922 57368063 -62376835 + AluSp/q SINE Alu 164 305 -8 261 163 0 0 chr13 57368357 57368406 -62376492 + T-rich Low_complexity Low_complexity 1 49 0 180 253 12 60 chr13 57368604 57368687 -62376211 + MIR SINE MIR 184 262 0 459 330 27 27 chr13 57372053 57372241 -62372657 + MIR SINE MIR 40 227 -35 24 0 0 0 chr13 57373413 57373437 -62371461 + AT_rich Low_complexity Low_complexity 1 24 0 744 43 0 0 chr13 57376172 57376264 -62368634 + (TA)n Simple_repeat Simple_repeat 2 93 0 998 230 95 40 chr13 57376264 57376670 -62368228 - MER57A LTR ERV1 -2 401 1 1773 168 3 0 chr13 57376714 57376999 -62367899 - AluSx SINE Alu -26 286 1 25 51 0 0 chr13 57379360 57379399 -62365499 + AT_rich Low_complexity Low_complexity 1 39 0 362 221 168 0 chr13 57379407 57379520 -62365378 + MIR SINE MIR 75 206 -56 398 234 11 0 chr13 57382932 57383026 -62361872 - MER67D LTR ERV1 -78 436 342 239 288 51 17 chr13 57383070 57383188 -62361710 - L1MC4a LINE L1 -1216 6592 6471 262 247 13 0 chr13 57383362 57383439 -62361459 - L1MC4 LINE L1 -51 7991 7914 470 259 42 12 chr13 57383503 57383669 -62361229 - L1MC4 LINE L1 -114 7928 7758 329 189 0 132 chr13 57383669 57383775 -62361123 + MER2 DNA MER2_type 1 92 -253 1057 130 0 47 chr13 57383785 57383977 -62360921 + AluJo SINE Alu 121 304 0 260 286 0 0 chr13 57383989 57384045 -62360853 - MER2 DNA MER2_type -5 340 285 1856 168 7 0 chr13 57384067 57384365 -62360533 + AluJb SINE Alu 11 310 -2 371 290 83 16 chr13 57384396 57384589 -62360309 - L1MC4 LINE L1 -288 7754 7549 21 36 0 0 chr13 57385258 57385286 -62359612 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr13 57385718 57385757 -62359141 + AT_rich Low_complexity Low_complexity 1 39 0 190 274 0 0 chr13 57386045 57386096 -62358802 - MIR SINE MIR -120 142 92 780 147 0 23 chr13 57386372 57386501 -62358397 - FLAM_C SINE Alu -7 126 1 2470 57 0 3 chr13 57386571 57386871 -62358027 + AluY SINE Alu 1 299 -12 1138 226 75 29 chr13 57387811 57388043 -62356855 + MLT1E2 LTR MaLR 61 316 -310 1318 62 0 11 chr13 57388043 57388220 -62356678 + L1PA4 LINE L1 5981 6155 0 1138 226 75 29 chr13 57388220 57388336 -62356562 + MLT1E2 LTR MaLR 316 425 -201 21 0 0 0 chr13 57388419 57388440 -62356458 + AT_rich Low_complexity Low_complexity 1 21 0 308 297 68 95 chr13 57388728 57389065 -62355833 - HAL1 LINE L1 -1097 1410 1083 2223 88 0 0 chr13 57389104 57389412 -62355486 - AluSq SINE Alu 0 308 1 6661 42 1 0 chr13 57390187 57390994 -62353904 + L1P LINE L1 3449 4256 -1890 21 36 0 0 chr13 57391601 57391629 -62353269 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 57391953 57391976 -62352922 + AT_rich Low_complexity Low_complexity 1 23 0 709 93 9 0 chr13 57443007 57443115 -62301783 + L1PA10 LINE L1 6060 6168 0 2310 65 0 3 chr13 57443133 57443424 -62301474 + AluY SINE Alu 1 290 -21 1247 250 17 28 chr13 57443587 57444119 -62300779 + L1M4c LINE L1 2034 2595 -3884 189 0 0 0 chr13 57444121 57444142 -62300756 + (A)n Simple_repeat Simple_repeat 1 21 0 816 310 163 20 chr13 57444163 57444569 -62300329 - MLT1K LTR MaLR -123 465 2 182 267 17 33 chr13 57444861 57444921 -62299977 - MIR SINE MIR -61 147 89 216 0 0 0 chr13 57445830 57445854 -62299044 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2029 154 3 0 chr13 57446083 57446394 -62298504 - AluSx SINE Alu 0 312 1 187 277 181 32 chr13 57446672 57446766 -62298132 + L3 LINE CR1 1447 1554 -23 261 128 0 0 chr13 57447644 57447691 -62297207 + (TC)n Simple_repeat Simple_repeat 2 48 0 2336 94 0 0 chr13 57447963 57448272 -62296626 + AluSg SINE Alu 1 309 -1 213 235 0 0 chr13 57448355 57448406 -62296492 + (TA)n Simple_repeat Simple_repeat 2 52 0 231 280 60 60 chr13 57448982 57449082 -62295816 + MIR SINE MIR 3 102 -160 607 277 69 5 chr13 57449084 57449286 -62295612 + MER58A DNA MER1_type 9 223 -1 493 266 57 6 chr13 57449286 57449444 -62295454 + MIR SINE MIR 97 262 0 187 51 0 51 chr13 57449542 57449581 -62295317 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr13 57452437 57452462 -62292436 + AT_rich Low_complexity Low_complexity 1 25 0 291 139 0 14 chr13 57452990 57453047 -62291851 + MLT2B1 LTR ERVL 399 518 -2 180 347 27 82 chr13 57453232 57453379 -62291519 - L2 LINE L2 -237 3035 2897 1413 168 25 35 chr13 57453669 57453954 -62290944 + AluJo SINE Alu 21 302 -10 22 35 0 0 chr13 57454265 57454294 -62290604 + AT_rich Low_complexity Low_complexity 1 29 0 749 120 34 6 chr13 57455592 57455767 -62289131 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 219 85 0 chr13 57455778 57455860 -62289038 + L1MC4 LINE L1 6615 6703 -1339 408 82 52 10 chr13 57455863 57455960 -62288938 + (TA)n Simple_repeat Simple_repeat 1 101 0 255 109 0 36 chr13 57455963 57456018 -62288880 - LTR66 LTR ERVL -171 439 387 25 0 0 0 chr13 57456727 57456752 -62288146 + AT_rich Low_complexity Low_complexity 1 25 0 275 312 0 13 chr13 57456874 57456951 -62287947 - MIR SINE MIR -105 157 82 346 318 69 12 chr13 57456985 57457158 -62287740 + L2 LINE L2 2477 2659 -655 2377 192 16 5 chr13 57457213 57457640 -62287258 + MLT2B1 LTR ERVL 3 434 -86 10217 166 34 41 chr13 57457641 57459635 -62285263 + ERVL-B1 LTR ERVL 3779 5758 -6 2242 209 46 28 chr13 57459635 57460089 -62284809 + MLT2B1 LTR ERVL 9 474 -46 879 17 26 0 chr13 57460089 57460206 -62284692 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 2242 209 46 28 chr13 57460206 57460254 -62284644 + MLT2B1 LTR ERVL 474 520 0 618 260 49 116 chr13 57460267 57460837 -62284061 + L2 LINE L2 2713 3313 0 1658 193 3 3 chr13 57461030 57461326 -62283572 + AluJb SINE Alu 1 296 -16 623 352 60 17 chr13 57461746 57462098 -62282800 - L2 LINE L2 0 3313 2947 434 371 96 30 chr13 57462154 57462561 -62282337 - L2 LINE L2 -434 2880 2447 268 278 111 71 chr13 57462732 57463596 -62281302 + L1M4 LINE L1 3705 4598 -1548 738 280 87 25 chr13 57463641 57464009 -62280889 + L1MC4 LINE L1 6698 7088 -954 770 207 7 0 chr13 57464309 57464454 -62280444 + FRAM SINE Alu 1 146 -30 252 0 0 0 chr13 57464533 57464561 -62280337 + (CA)n Simple_repeat Simple_repeat 2 29 0 328 127 0 28 chr13 57464576 57464647 -62280251 + (TA)n Simple_repeat Simple_repeat 2 70 0 461 47 16 0 chr13 57464649 57464713 -62280185 + (CA)n Simple_repeat Simple_repeat 2 66 0 1745 112 0 68 chr13 57464713 57465007 -62279891 - AluSx SINE Alu -38 274 1 226 281 129 0 chr13 57465322 57465500 -62279398 + L1MC4 LINE L1 7841 8041 -1 2410 176 31 0 chr13 57465543 57465997 -62278901 - L1 LINE L1 -914 5232 4765 25 51 0 0 chr13 57466027 57466066 -62278832 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr13 57466484 57466507 -62278391 + AT_rich Low_complexity Low_complexity 1 23 0 691 320 30 9 chr13 57466709 57466940 -62277958 - MIR SINE MIR -24 238 3 238 249 378 16 chr13 57468047 57468232 -62276666 + MIR SINE MIR 2 253 -9 786 239 43 14 chr13 57468369 57468578 -62276320 + MER20 DNA MER1_type 5 219 0 208 349 121 12 chr13 57468638 57468721 -62276177 - L2 LINE L2 -30 3242 3151 270 0 0 0 chr13 57471292 57471322 -62273576 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3106 153 17 25 chr13 57474302 57474833 -62270065 + MER1A DNA MER1_type 1 527 0 393 330 126 38 chr13 57475114 57475511 -62269387 + L3 LINE CR1 982 1413 -164 250 157 0 0 chr13 57476302 57476353 -62268545 + L1MC4 LINE L1 6653 6703 -1339 328 275 0 42 chr13 57476359 57476503 -62268395 - L1MC4 LINE L1 -1339 6703 6614 784 274 11 0 chr13 57476556 57476735 -62268163 - MER63A DNA MER1_type -16 194 14 21 36 0 0 chr13 57477815 57477843 -62267055 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr13 57478088 57478131 -62266767 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 205 0 0 chr13 57478635 57478674 -62266224 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr13 57479126 57479152 -62265746 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 57479192 57479217 -62265681 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 57479911 57479935 -62264963 + AT_rich Low_complexity Low_complexity 1 24 0 325 358 180 16 chr13 57480831 57481258 -62263640 - L2 LINE L2 -739 2575 2079 220 150 50 17 chr13 57481636 57481696 -62263202 + (TA)n Simple_repeat Simple_repeat 1 62 0 3371 151 19 62 chr13 57482211 57482669 -62262229 - L1MA4A LINE L1 -6 6297 5878 1538 108 0 5 chr13 57482669 57482883 -62262015 + AluSg/x SINE Alu 91 303 -9 3371 151 19 62 chr13 57482883 57483120 -62261778 - L1MA4A LINE L1 -425 5878 5632 1981 142 16 13 chr13 57483121 57483257 -62261641 + AluSx SINE Alu 1 135 -201 2500 62 0 0 chr13 57483257 57483562 -62261336 + AluY SINE Alu 1 305 -6 1981 142 16 13 chr13 57483562 57483760 -62261138 + AluSx SINE Alu 135 336 0 1960 152 2 74 chr13 57483761 57484298 -62260600 - L1MA4A LINE L1 -661 5642 5144 1877 164 15 1 chr13 57484307 57484611 -62260287 + THE1B LTR MaLR 66 364 0 12415 213 32 29 chr13 57484614 57485811 -62259087 - L1 LINE L1 -1000 5848 4655 1692 181 7 3 chr13 57485811 57486109 -62258789 - AluJo SINE Alu -13 299 1 12415 213 32 29 chr13 57486109 57489094 -62255804 - L1 LINE L1 -2193 4655 1642 1342 257 189 56 chr13 57489102 57489434 -62255464 - L1 LINE L1 -5868 981 695 216 0 0 0 chr13 57489434 57489458 -62255440 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1342 257 189 56 chr13 57489458 57489852 -62255046 - L1 LINE L1 -6154 695 10 621 251 16 11 chr13 57490644 57490835 -62254063 + Charlie2 DNA MER1_type 1859 2050 -812 2028 257 31 21 chr13 57491955 57492473 -62252425 + MLT1F LTR MaLR 11 533 -9 631 280 79 5 chr13 57493071 57493260 -62251638 - MIR SINE MIR -6 256 54 19124 183 29 43 chr13 57493312 57494451 -62250447 - L1P3 LINE L1 -1481 5367 4214 2070 123 7 0 chr13 57494451 57494744 -62250154 - AluSp SINE Alu -18 295 1 19124 183 29 43 chr13 57494744 57498603 -62246295 - L1P3 LINE L1 -2634 4214 2 1400 183 63 22 chr13 57498610 57499037 -62245861 + Tigger7 DNA MER2_type 107 2487 0 260 261 7 35 chr13 57499049 57499132 -62245766 + (TA)n Simple_repeat Simple_repeat 2 81 -58 1752 175 10 14 chr13 57499132 57499424 -62245474 - AluJb SINE Alu -21 291 1 260 261 7 35 chr13 57499424 57499482 -62245416 + (TA)n Simple_repeat Simple_repeat 81 139 0 985 288 115 29 chr13 57499482 57499575 -62245323 + L1MC4 LINE L1 6615 6699 -1343 217 0 61 0 chr13 57499575 57499608 -62245290 + (TA)n Simple_repeat Simple_repeat 2 36 0 985 288 115 29 chr13 57499608 57499918 -62244980 + L1MC4 LINE L1 6699 6981 -1061 1555 167 62 69 chr13 57499918 57499957 -62244941 - MLT1B LTR MaLR -3 387 349 2213 74 0 23 chr13 57499957 57500267 -62244631 + AluY SINE Alu 1 303 -8 1555 167 62 69 chr13 57500267 57500617 -62244281 - MLT1B LTR MaLR -41 349 1 985 288 115 29 chr13 57500617 57501199 -62243699 + L1MC4 LINE L1 6981 7869 -173 373 348 38 45 chr13 57501614 57501901 -62242997 - L1ME3 LINE L1 -324 5838 5554 392 351 48 0 chr13 57502030 57502198 -62242700 - L1ME3 LINE L1 -1050 5096 4921 345 318 113 15 chr13 57502350 57502545 -62242353 + L1M4 LINE L1 4127 4340 -1806 343 189 27 81 chr13 57502607 57502718 -62242180 + L1MA8 LINE L1 6180 6284 -7 2221 114 3 0 chr13 57502859 57503165 -62241733 - AluSx SINE Alu -5 307 1 686 269 24 12 chr13 57504556 57504723 -62240175 - MER45A DNA AcHobo 0 178 10 2493 61 0 0 chr13 57505346 57505657 -62239241 + AluY SINE Alu 1 311 0 30 0 0 0 chr13 57505907 57505937 -62238961 + AT_rich Low_complexity Low_complexity 1 30 0 570 288 137 32 chr13 57506097 57506658 -62238240 - L1ME4a LINE L1 -1 6054 5439 272 266 0 21 chr13 57507221 57507315 -62237583 - L1ME4a LINE L1 -2203 3877 3786 26 30 0 0 chr13 57507828 57507861 -62237037 + AT_rich Low_complexity Low_complexity 1 33 0 68 13 0 0 chr13 57507878 57507953 -62236945 + AT_rich Low_complexity Low_complexity 1 75 0 409 44 125 0 chr13 57507958 57508118 -62236780 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr13 57508121 57508144 -62236754 + AT_rich Low_complexity Low_complexity 1 23 0 281 195 87 0 chr13 57508146 57508295 -62236603 + (TATAA)n Simple_repeat Simple_repeat 2 163 0 25 0 0 0 chr13 57508515 57508540 -62236358 + AT_rich Low_complexity Low_complexity 1 25 0 391 294 114 16 chr13 57508668 57508852 -62236046 - MLT1J2 LTR MaLR -2 448 247 24 67 0 0 chr13 57508951 57508996 -62235902 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr13 57511468 57511491 -62233407 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 937 276 12 12 chr13 57511499 57511749 -62233149 - MIR SINE MIR -11 251 2 950 269 92 35 chr13 57511937 57513054 -62231844 - L1ME LINE L1 -4320 1941 703 203 221 0 29 chr13 57513440 57513508 -62231390 + (TAA)n Simple_repeat Simple_repeat 1 66 0 23 0 0 0 chr13 57513561 57513584 -62231314 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr13 57514474 57514517 -62230381 + AT_rich Low_complexity Low_complexity 1 43 0 376 271 179 33 chr13 57516028 57516179 -62228719 + MER5A DNA MER1_type 11 183 -6 1096 309 63 34 chr13 57516280 57516834 -62228064 + L1MA6 LINE L1 12 581 -6208 12695 223 44 20 chr13 57516996 57522235 -62222663 + L1MA6 LINE L1 1121 6144 -743 927 153 6 6 chr13 57522248 57522405 -62222493 + FRAM SINE Alu 12 168 -8 3952 158 70 20 chr13 57522411 57523171 -62221727 + L1MA6 LINE L1 6142 6939 -3 36 0 0 0 chr13 57523178 57523214 -62221684 + AT_rich Low_complexity Low_complexity 1 36 0 1105 305 100 12 chr13 57525973 57526555 -62218343 - L2 LINE L2 -171 3142 2508 3439 34 25 0 chr13 57526555 57526994 -62217904 - L1PA5 LINE L1 -765 5381 4932 6313 38 3 11 chr13 57526994 57527778 -62217120 + L1PA5 LINE L1 5378 6154 0 749 265 143 7 chr13 57527790 57528077 -62216821 - L2 LINE L2 -834 2480 2155 207 146 49 0 chr13 57528481 57528522 -62216376 + (AATAG)n Simple_repeat Simple_repeat 4 46 0 281 224 158 0 chr13 57528686 57528762 -62216136 + MIR3 SINE MIR 121 208 0 1069 164 38 0 chr13 57529616 57529829 -62215069 + L1MA8 LINE L1 6070 6290 -1 373 295 36 7 chr13 57530192 57530331 -62214567 + MER112 DNA MER1_type 1 143 -117 212 59 29 0 chr13 57530350 57530384 -62214514 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 218 200 22 0 chr13 57531137 57531182 -62213716 - L2 LINE L2 0 3313 3268 380 235 68 23 chr13 57531563 57531695 -62213203 - LTR27 LTR ERV1 0 636 499 2285 215 31 15 chr13 57531748 57532288 -62212610 - LTR27 LTR ERV1 -140 496 1 242 252 43 101 chr13 57532384 57532523 -62212375 - MER5A DNA MER1_type -18 171 41 228 373 19 31 chr13 57532391 57532552 -62212346 + MER5A DNA MER1_type 31 189 0 * 382 281 100 52 chr13 57532671 57532902 -62211996 + MIR SINE MIR 20 261 -1 620 316 30 17 chr13 57532935 57533166 -62211732 + MIR SINE MIR 13 246 -16 865 230 93 80 chr13 57533906 57534532 -62210366 + MER52A LTR ERV1 270 738 -282 538 306 43 27 chr13 57534600 57534786 -62210112 + MER52A LTR ERV1 1221 1409 -346 542 271 0 54 chr13 57534857 57535023 -62209875 + MER52A LTR ERV1 1599 1755 0 258 293 198 22 chr13 57535056 57535278 -62209620 + L2 LINE L2 2609 2869 -445 300 333 94 83 chr13 57535389 57535454 -62209444 + L2 LINE L2 2994 3057 -215 1631 146 46 0 chr13 57535454 57535714 -62209184 + AluSx SINE Alu 21 292 -20 300 333 94 83 chr13 57535714 57535924 -62208974 + L2 LINE L2 3057 3272 0 679 159 0 0 chr13 57536943 57537050 -62207848 - FLAM_C SINE Alu -7 136 30 186 43 0 0 chr13 57537117 57537140 -62207758 + (T)n Simple_repeat Simple_repeat 1 23 0 199 360 85 20 chr13 57537172 57537325 -62207573 + L3 LINE CR1 1341 1503 -74 689 307 28 5 chr13 57538675 57538887 -62206011 - MER58A DNA MER1_type 0 224 8 22 56 0 0 chr13 57539777 57539813 -62205085 + AT_rich Low_complexity Low_complexity 1 36 0 587 354 111 27 chr13 57540346 57541191 -62203707 - L2 LINE L2 -61 3252 2328 486 61 0 0 chr13 57542188 57542254 -62202644 + (TC)n Simple_repeat Simple_repeat 1 66 0 360 0 0 0 chr13 57542254 57542294 -62202604 + (TA)n Simple_repeat Simple_repeat 1 40 0 1991 188 14 80 chr13 57542350 57542636 -62202262 + MSTB2 LTR MaLR 1 304 -153 3729 132 57 79 chr13 57542636 57543438 -62201460 + LTR1 LTR ERV1 1 785 0 1991 188 14 80 chr13 57543438 57543458 -62201440 + MSTB2 LTR MaLR 304 324 -133 1873 165 10 0 chr13 57543458 57543755 -62201143 - AluSx SINE Alu -12 300 1 1991 188 14 80 chr13 57543755 57543936 -62200962 + MSTB2 LTR MaLR 324 457 0 316 228 188 10 chr13 57544333 57544434 -62200464 - L1 LINE L1 -2739 3407 3289 1223 263 31 31 chr13 57544512 57544927 -62199971 - LTR52 LTR ERVL -3 418 4 182 37 37 0 chr13 57545056 57545083 -62199815 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 27 62 0 0 chr13 57545531 57545579 -62199319 + AT_rich Low_complexity Low_complexity 1 48 0 308 328 8 8 chr13 57545969 57546097 -62198801 - MER94 DNA DNA -5 129 2 250 315 36 18 chr13 57546191 57546302 -62198596 - MIR SINE MIR -103 159 47 1583 158 8 8 chr13 57546721 57546981 -62197917 + MER4E LTR ERV1 520 779 0 232 304 68 99 chr13 57548140 57548301 -62196597 - L2 LINE L2 -1 3271 3116 279 295 170 67 chr13 57549118 57549342 -62195556 - MIR SINE MIR -10 252 6 246 105 0 0 chr13 57549473 57549511 -62195387 + (ATG)n Simple_repeat Simple_repeat 2 39 0 663 306 15 0 chr13 57549520 57549716 -62195182 - MIR SINE MIR -15 247 49 3201 212 60 27 chr13 57550068 57550885 -62194013 - L1MA9 LINE L1 -40 6272 5429 180 241 74 0 chr13 57551107 57551161 -62193737 + L2 LINE L2 3256 3313 0 229 204 0 0 chr13 57551161 57551210 -62193688 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 729 234 43 5 chr13 57551522 57551706 -62193192 - MER3 DNA MER1_type -18 191 1 1474 186 94 0 chr13 57552229 57552557 -62192341 + MER46B DNA MER2_type 3 236 0 222 241 78 103 chr13 57554794 57554910 -62189988 - L2 LINE L2 -2 3270 3158 2231 92 0 0 chr13 57555018 57555325 -62189573 - AluSx SINE Alu 0 307 1 207 0 0 0 chr13 57555331 57555354 -62189544 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2217 121 38 3 chr13 57555421 57555752 -62189146 - THE1A LTR MaLR -18 408 3 7607 170 52 46 chr13 57555754 57557393 -62187505 - MST-int LTR MaLR 0 1651 3 2131 101 38 71 chr13 57557395 57557762 -62187136 - THE1A LTR MaLR 0 355 1 219 385 88 5 chr13 57559217 57559409 -62185489 + MIR SINE MIR 53 260 -2 13498 146 37 6 chr13 57559683 57562026 -62182872 - Tigger1 DNA MER2_type -3 2415 1 1947 130 3 7 chr13 57563222 57563552 -62181346 + AluSq SINE Alu 1 329 0 33 0 0 0 chr13 57563618 57563651 -62181247 + AT_rich Low_complexity Low_complexity 1 33 0 200 189 0 0 chr13 57565127 57565164 -62179734 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 32 0 0 chr13 57567110 57567141 -62177757 + AT_rich Low_complexity Low_complexity 1 31 0 308 340 19 13 chr13 57568187 57568346 -62176552 + MIR SINE MIR 88 247 -15 202 178 0 27 chr13 57568361 57568434 -62176464 + T-rich Low_complexity Low_complexity 2 72 0 803 180 86 99 chr13 57568446 57568668 -62176230 + MER20 DNA MER1_type 1 219 0 351 289 60 40 chr13 57569062 57569263 -62175635 + LTR40c LTR ERVL 167 371 -94 186 43 0 0 chr13 57572804 57572827 -62172071 + (CA)n Simple_repeat Simple_repeat 2 24 0 446 0 19 0 chr13 57572827 57572843 -62172055 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 446 0 19 0 chr13 57572843 57572897 -62172001 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1760 150 87 3 chr13 57572903 57573236 -62171662 - MER46B DNA MER2_type 0 236 1 16293 170 23 49 chr13 57574566 57576203 -62168695 + L1PA7 LINE L1 3 1682 -5167 3414 136 22 22 chr13 57576203 57576791 -62168107 - LTR4 LTR ERV1 0 588 1 16293 170 23 49 chr13 57576791 57577249 -62167649 + L1PA7 LINE L1 1682 2151 -4698 1501 211 7 10 chr13 57577249 57577547 -62167351 - AluJb SINE Alu -15 297 1 16293 170 23 49 chr13 57577547 57578298 -62166600 + L1PA7 LINE L1 2151 2740 -4109 3410 147 21 0 chr13 57578298 57578814 -62166084 - MER1A DNA MER1_type 0 527 1 16293 170 23 49 chr13 57578814 57579630 -62165268 + L1PA7 LINE L1 2740 3576 -3273 7338 189 56 21 chr13 57579623 57579696 -62165202 + L1PA7 LINE L1 4119 4188 -2681 * 180 0 0 0 chr13 57579696 57579716 -62165182 + (TAA)n Simple_repeat Simple_repeat 2 21 0 7338 189 56 21 chr13 57579716 57581477 -62163421 + L1PA7 LINE L1 4188 6055 -814 3258 81 0 5 chr13 57581477 57581921 -62162977 + L1PA7 LINE L1 6413 6854 -3 7338 189 56 21 chr13 57581921 57582353 -62162545 + L1PA7 LINE L1 6055 6470 -399 467 267 50 44 chr13 57583185 57583365 -62161533 + MIR SINE MIR 82 262 0 367 315 35 54 chr13 57585083 57585343 -62159555 + LTR33 LTR ERVL 21 275 -246 231 179 0 0 chr13 57585370 57585409 -62159489 + tRNA-Thr-ACT tRNA tRNA 2 40 -37 232 301 48 60 chr13 57585411 57585577 -62159321 + LTR33 LTR ERVL 345 508 -13 2026 187 48 34 chr13 57585707 57586137 -62158761 - MSTB1 LTR MaLR 0 432 2 507 359 28 42 chr13 57586509 57586796 -62158102 - LTR16C LTR ERVL -60 431 149 341 359 19 19 chr13 57587937 57588093 -62156805 + ERVL LTR ERVL 1531 1686 -4078 404 341 53 16 chr13 57588172 57588418 -62156480 + ERVL LTR ERVL 1744 1998 -3487 490 318 71 0 chr13 57588571 57588769 -62156129 + ERVL LTR ERVL 2292 2503 -3261 728 309 83 17 chr13 57588794 57589202 -62155696 + LTR16A1 LTR ERVL 10 444 -13 829 350 63 20 chr13 57589402 57589891 -62155007 + ERVL LTR ERVL 4518 5027 -737 2026 101 19 35 chr13 57590176 57590189 -62154709 - AluSx SINE Alu 0 312 300 240 35 0 0 chr13 57590189 57590218 -62154680 + (TC)n Simple_repeat Simple_repeat 2 30 0 2026 101 19 35 chr13 57590218 57590521 -62154377 - AluSx SINE Alu -12 300 1 7150 142 44 24 chr13 57591044 57592319 -62152579 - HSMAR2 DNA Mariner -1 1301 2 26 0 0 0 chr13 57592557 57592583 -62152315 + AT_rich Low_complexity Low_complexity 1 26 0 1485 188 16 43 chr13 57592759 57593063 -62151835 + AluJo SINE Alu 1 296 -16 242 287 17 44 chr13 57593523 57593704 -62151194 + CT-rich Low_complexity Low_complexity 2 177 0 220 232 36 0 chr13 57594335 57594391 -62150507 + (CTA)n Simple_repeat Simple_repeat 1 58 0 27 0 0 0 chr13 57594952 57594979 -62149919 + AT_rich Low_complexity Low_complexity 1 27 0 481 118 0 13 chr13 57594979 57595055 -62149843 - tRNA-Glu-GAG tRNA tRNA 0 75 1 7443 33 1 1 chr13 57595061 57596205 -62148693 + L1PA4 LINE L1 5009 6152 -3 29 28 0 0 chr13 57596306 57596342 -62148556 + AT_rich Low_complexity Low_complexity 1 36 0 213 132 0 0 chr13 57597048 57597086 -62147812 + (CTA)n Simple_repeat Simple_repeat 1 38 0 237 65 0 0 chr13 57597165 57597196 -62147702 + (TATG)n Simple_repeat Simple_repeat 4 34 0 21 0 0 0 chr13 57597222 57597243 -62147655 + AT_rich Low_complexity Low_complexity 1 21 0 2321 271 48 34 chr13 57597264 57598128 -62146770 + L1M4c LINE L1 1001 1851 -4531 2360 93 3 0 chr13 57598128 57598428 -62146470 + AluSp SINE Alu 1 301 -12 2321 271 48 34 chr13 57598428 57598753 -62146145 + L1M4c LINE L1 1851 2170 -4212 2177 88 0 0 chr13 57598753 57599025 -62145873 + AluSc SINE Alu 38 309 0 2321 271 48 34 chr13 57599025 57599314 -62145584 + L1M4c LINE L1 2170 2572 -3810 2209 202 56 0 chr13 57599321 57599436 -62145462 + L1MB1 LINE L1 5661 5768 -400 381 93 0 0 chr13 57599436 57599490 -62145408 + (TA)n Simple_repeat Simple_repeat 1 54 0 2209 202 56 0 chr13 57599490 57599855 -62145043 + L1MB1 LINE L1 5768 6168 0 22 0 0 0 chr13 57600599 57600621 -62144277 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr13 57601784 57601836 -62143062 + AT_rich Low_complexity Low_complexity 1 52 0 1431 196 55 149 chr13 57601999 57602568 -62142330 + MLT2B3 LTR ERVL 1 622 68 402 21 0 0 chr13 57602568 57602615 -62142283 + (CA)n Simple_repeat Simple_repeat 1 47 0 198 0 0 0 chr13 57602614 57602636 -62142262 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 1431 196 55 149 chr13 57602615 57602669 -62142229 + MLT2B3 LTR ERVL 621 546 -8 22 0 0 0 chr13 57602794 57602816 -62142082 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr13 57603106 57603136 -62141762 + AT_rich Low_complexity Low_complexity 1 30 0 246 62 0 0 chr13 57603229 57603261 -62141637 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 267 31 0 0 chr13 57603260 57603292 -62141606 + (GA)n Simple_repeat Simple_repeat 1 32 0 13122 161 19 26 chr13 57603745 57603789 -62141109 + Tigger1 DNA MER2_type 14 57 -2361 2028 122 34 0 chr13 57603789 57604083 -62140815 - AluY SINE Alu -7 304 1 13122 161 19 26 chr13 57604083 57606240 -62138658 + Tigger1 DNA MER2_type 57 2198 -220 1895 160 3 13 chr13 57606240 57606553 -62138345 - AluSx SINE Alu -1 311 2 13122 161 19 26 chr13 57606553 57606766 -62138132 + Tigger1 DNA MER2_type 2198 2411 -7 569 235 25 0 chr13 57607604 57607723 -62137175 + FLAM_A SINE Alu 4 125 -8 39 60 0 0 chr13 57608493 57608560 -62136338 + AT_rich Low_complexity Low_complexity 1 67 0 618 314 16 48 chr13 57608683 57608931 -62135967 - MIR SINE MIR 0 262 23 207 120 114 0 chr13 57610424 57610582 -62134316 + (TA)n Simple_repeat Simple_repeat 1 176 0 23 54 0 0 chr13 57611810 57611847 -62133051 + AT_rich Low_complexity Low_complexity 1 37 0 7889 86 5 7 chr13 57613232 57614305 -62130593 - MER11C LTR ERVK 0 1071 1 6012 110 8 11 chr13 57614364 57616046 -62128852 + L1PA12 LINE L1 4469 6166 -2 391 282 41 6 chr13 57616839 57617009 -62127889 - L1MEd LINE L1 -4971 1148 973 2241 120 0 10 chr13 57617728 57618036 -62126862 - AluSx SINE Alu -7 305 1 1151 239 19 69 chr13 57619240 57619617 -62125281 - MLT1E1 LTR MaLR 0 654 297 336 211 14 14 chr13 57619641 57619712 -62125186 - MLT1E1 LTR MaLR -541 113 43 2399 78 0 0 chr13 57620559 57620853 -62124045 + AluSc SINE Alu 1 294 -15 23 0 0 0 chr13 57621293 57621316 -62123582 + AT_rich Low_complexity Low_complexity 1 23 0 338 138 35 11 chr13 57621499 57621586 -62123312 + GA-rich Low_complexity Low_complexity 3 91 0 431 331 100 56 chr13 57621671 57622203 -62122695 + L1MEd LINE L1 524 1078 -5041 1354 330 130 49 chr13 57624061 57625661 -62119237 - L2 LINE L2 -370 2944 1216 380 271 43 105 chr13 57627703 57628054 -62116844 - L1ME LINE L1 -359 5811 5483 364 277 123 68 chr13 57628179 57628576 -62116322 - L1ME LINE L1 -824 5322 4904 339 239 0 0 chr13 57628836 57628907 -62115991 + MIR SINE MIR 20 90 -172 236 213 33 0 chr13 57629023 57629084 -62115814 - L1MC4 LINE L1 -1340 6702 6640 407 281 23 74 chr13 57629094 57629311 -62115587 + Charlie2 DNA MER1_type 113 318 -2464 1849 242 39 74 chr13 57629315 57629501 -62115397 + Charlie2 DNA MER1_type 1865 2056 -806 2778 236 29 20 chr13 57629501 57630183 -62114715 + MER76 LTR ERV 1 688 0 1849 242 39 74 chr13 57630183 57631029 -62113869 + Charlie2 DNA MER1_type 2056 2861 -1 544 269 110 16 chr13 57631361 57631757 -62113141 - LTR33 LTR ERVL -4 517 59 23 0 0 0 chr13 57631962 57631985 -62112913 + AT_rich Low_complexity Low_complexity 1 23 0 1967 170 20 3 chr13 57632194 57632536 -62112362 - MER7A DNA MER2_type 0 346 1 584 137 218 19 chr13 57632537 57632748 -62112150 - MER33 DNA MER1_type -38 286 34 1866 96 0 26 chr13 57633051 57633322 -62111576 + AluSc SINE Alu 36 299 -10 1285 226 3 0 chr13 57633438 57633725 -62111173 - L1MB7 LINE L1 -16 6168 5881 1198 187 49 16 chr13 57633727 57633973 -62110925 - MSTB LTR MaLR -2 424 171 556 217 19 0 chr13 57633984 57634090 -62110808 + MSTB LTR MaLR 83 190 -236 2017 243 95 39 chr13 57634090 57634943 -62109955 - L1ME LINE L1 -1643 4503 3603 231 36 0 0 chr13 57635002 57635030 -62109868 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1314 191 62 10 chr13 57635643 57635931 -62108967 - AluJb SINE Alu -7 305 3 193 333 118 43 chr13 57636895 57636988 -62107910 - L2 LINE L2 -20 3252 3153 395 221 0 9 chr13 57638813 57638926 -62105972 + (TG)n Simple_repeat Simple_repeat 2 113 0 346 255 0 39 chr13 57638926 57639028 -62105870 + L1MC4 LINE L1 6614 6711 -1331 356 216 43 11 chr13 57639395 57639576 -62105322 + L1MA9 LINE L1 6008 6290 -22 391 296 17 0 chr13 57640451 57640566 -62104332 + L2 LINE L2 3192 3308 -5 351 0 0 0 chr13 57640696 57640735 -62104163 + (TA)n Simple_repeat Simple_repeat 2 40 0 2242 114 0 0 chr13 57640735 57641043 -62103855 - AluSg SINE Alu -1 309 2 292 291 118 16 chr13 57641615 57641742 -62103156 + MIR SINE MIR 52 191 -71 647 74 0 11 chr13 57642995 57643090 -62101808 + (TA)n Simple_repeat Simple_repeat 2 95 0 1596 171 100 0 chr13 57643773 57644054 -62100844 - MER1B DNA MER1_type 0 339 31 747 249 53 42 chr13 57645826 57646111 -62098787 - L1MB7 LINE L1 -415 5751 5464 996 266 145 13 chr13 57646130 57646674 -62098224 - L1MB7 LINE L1 -1302 4844 4229 290 281 54 0 chr13 57646694 57646918 -62097980 - L1MB7 LINE L1 -1889 4257 3878 * 581 351 53 39 chr13 57646915 57647706 -62097192 - L1MEc LINE L1 -5488 908 107 402 255 90 43 chr13 57647803 57648125 -62096773 + L1M4 LINE L1 5045 5381 -765 25 83 0 0 chr13 57648365 57648425 -62096473 + AT_rich Low_complexity Low_complexity 1 60 0 402 397 24 27 chr13 57649713 57650008 -62094890 - L2 LINE L2 -31 3241 2948 194 128 26 0 chr13 57650208 57650247 -62094651 + (TAA)n Simple_repeat Simple_repeat 1 40 0 204 330 62 10 chr13 57650305 57650402 -62094496 - MIR SINE MIR -61 147 46 282 250 62 16 chr13 57650785 57650913 -62093985 + MER103 DNA DNA 21 154 -12 27 0 0 0 chr13 57651054 57651081 -62093817 + AT_rich Low_complexity Low_complexity 1 27 0 302 296 108 52 chr13 57651596 57651809 -62093089 + MLT1L LTR MaLR 306 530 -85 682 235 95 68 chr13 57652145 57652355 -62092543 + L1MD1 LINE L1 20 240 -6300 2108 113 10 3 chr13 57652355 57652665 -62092233 + AluSp SINE Alu 1 312 -1 682 235 95 68 chr13 57652665 57652718 -62092180 + L1MD1 LINE L1 240 290 -6250 * 1747 274 65 9 chr13 57652703 57653390 -62091508 + L1MD1 LINE L1 2598 3323 -3217 517 207 0 0 chr13 57653380 57653491 -62091407 + L1MD1 LINE L1 5780 5890 -746 * 431 157 56 45 chr13 57653527 57653601 -62091297 - Tigger7 DNA MER2_type -8 2479 2402 1523 206 68 54 chr13 57653601 57654028 -62090870 + Tigger2a DNA MER2_type 1 433 -1 431 157 56 45 chr13 57654028 57654042 -62090856 - Tigger7 DNA MER2_type -85 2402 2390 1098 231 86 4 chr13 57654054 57654297 -62090601 - Tigger7 DNA MER2_type -470 263 1 2983 198 47 23 chr13 57654297 57654984 -62089914 + L1MD1 LINE L1 5925 6627 -9 571 263 27 0 chr13 57655371 57655557 -62089341 - L1M4c LINE L1 -4188 2458 2268 3238 239 61 61 chr13 57655589 57657430 -62087468 - L1M4c LINE L1 -4481 2165 392 228 328 195 16 chr13 57657783 57657911 -62086987 - MIR SINE MIR -84 178 28 1747 149 127 0 chr13 57658458 57658766 -62086132 + MER7A DNA MER2_type 2 346 0 21 89 0 0 chr13 57659198 57659254 -62085644 + AT_rich Low_complexity Low_complexity 1 56 0 1119 182 37 37 chr13 57660703 57660802 -62084096 - AluJb SINE Alu -98 214 116 2048 122 55 50 chr13 57660802 57661164 -62083734 - THE1B LTR MaLR 0 364 1 11106 104 6 11 chr13 57661164 57662752 -62082146 - THE1B-int LTR MaLR 0 1580 1 1935 142 73 14 chr13 57662752 57663096 -62081802 - THE1B LTR MaLR 0 364 1 1119 182 37 37 chr13 57663096 57663208 -62081690 - AluJb SINE Alu -193 119 1 1048 276 23 46 chr13 57663506 57663857 -62081041 + L1MD3 LINE L1 6496 6846 -1149 21 36 0 0 chr13 57664239 57664267 -62080631 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 57664378 57664401 -62080497 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr13 57664634 57664666 -62080232 + AT_rich Low_complexity Low_complexity 1 32 0 181 275 62 25 chr13 57664704 57664784 -62080114 - MIR SINE MIR 0 262 180 5011 48 0 0 chr13 57664815 57665425 -62079473 - L1PA5 LINE L1 -3 6151 5542 548 45 0 0 chr13 57665425 57665491 -62079407 - L1P2 LINE L1 -555 5599 5534 216 341 141 15 chr13 57665494 57665629 -62079269 - MIR SINE MIR -108 154 3 257 329 18 18 chr13 57665847 57666017 -62078881 + MER41B LTR ERV1 260 429 -206 4424 200 21 19 chr13 57666274 57667673 -62077225 - L1MA7 LINE L1 0 6291 4888 324 355 76 10 chr13 57668366 57668563 -62076335 + MIR SINE MIR 6 215 -47 28 0 0 0 chr13 57671313 57671341 -62073557 + AT_rich Low_complexity Low_complexity 1 28 0 180 349 24 36 chr13 57671350 57671433 -62073465 - L2 LINE L2 -46 3267 3186 28 86 0 0 chr13 57671586 57671656 -62073242 + AT_rich Low_complexity Low_complexity 1 70 0 3739 167 4 16 chr13 57671657 57672364 -62072534 - L1PA3 LINE L1 -838 5308 4610 1019 111 8 3 chr13 57672362 57672539 -62072359 + L1PA3 LINE L1 5307 5490 -678 * 2177 18 0 0 chr13 57672537 57672908 -62071990 - L1P1 LINE L1 -658 5497 5127 5114 25 0 0 chr13 57672908 57673493 -62071405 + L1PA3 LINE L1 5563 6155 0 4565 109 27 0 chr13 57673495 57674167 -62070731 + L1PA10 LINE L1 5476 6165 -3 517 333 40 18 chr13 57674362 57674584 -62070314 + MIR SINE MIR 36 262 0 485 289 96 0 chr13 57675825 57675991 -62068907 + MIR SINE MIR 78 259 -3 1830 197 14 14 chr13 57676730 57677095 -62067803 + MLT1A1 LTR MaLR 1 365 0 210 233 0 0 chr13 57677236 57677279 -62067619 + CT-rich Low_complexity Low_complexity 1 43 0 201 225 0 0 chr13 57677278 57677318 -62067580 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 1273 145 149 14 chr13 57677344 57677626 -62067272 + MER4A LTR ERV1 1 320 -344 574 191 252 30 chr13 57677696 57677939 -62066959 + MER4C LTR ERV1 159 656 -8 1900 162 32 35 chr13 57679061 57679407 -62065491 - THE1B LTR MaLR -19 345 1 182 313 84 12 chr13 57679407 57679490 -62065408 + L2 LINE L2 3174 3262 -10 223 233 0 39 chr13 57679592 57679637 -62065261 + GA-rich Low_complexity Low_complexity 3 48 -53 655 194 0 16 chr13 57679637 57679761 -62065137 + FLAM_A SINE Alu 2 123 -10 223 233 0 39 chr13 57679761 57679818 -62065080 + GA-rich Low_complexity Low_complexity 48 101 0 2233 112 52 3 chr13 57682298 57682645 -62062253 - THE1B LTR MaLR 0 364 1 8178 135 40 10 chr13 57682645 57682812 -62062086 - THE1B-int LTR MaLR 0 1580 1419 1960 137 18 80 chr13 57682812 57683200 -62061698 - THE1B LTR MaLR 0 364 1 8178 135 40 10 chr13 57683200 57684565 -62060333 - THE1B-int LTR MaLR -161 1419 3 2554 88 17 11 chr13 57684572 57684924 -62059974 - THE1B LTR MaLR -10 354 1 312 274 27 0 chr13 57685042 57685115 -62059783 + MIR SINE MIR 69 143 -65 315 0 0 0 chr13 57685213 57685248 -62059650 + (CA)n Simple_repeat Simple_repeat 2 36 0 1343 194 17 36 chr13 57685388 57685825 -62059073 + L1M1 LINE L1 5071 5506 -744 23 54 0 0 chr13 57686028 57686065 -62058833 + AT_rich Low_complexity Low_complexity 1 37 0 384 91 0 0 chr13 57687255 57687310 -62057588 - MLT2A1 LTR ERVL 0 444 390 644 323 80 43 chr13 57688071 57688532 -62056366 - L2 LINE L2 -5 3308 2831 28 29 0 0 chr13 57689702 57689737 -62055161 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr13 57690486 57690515 -62054383 + (TA)n Simple_repeat Simple_repeat 1 29 0 186 118 0 0 chr13 57690637 57690671 -62054227 + (TTA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr13 57690677 57690699 -62054199 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr13 57691251 57691305 -62053593 + AT_rich Low_complexity Low_complexity 1 54 0 328 316 107 12 chr13 57691340 57691508 -62053390 - MIR SINE MIR -74 188 5 255 356 88 42 chr13 57692232 57692448 -62052450 + MIR SINE MIR 1 226 -36 269 307 124 15 chr13 57692573 57692710 -62052188 + MLT1I LTR MaLR 207 358 -51 318 50 0 0 chr13 57693660 57693700 -62051198 + (TA)n Simple_repeat Simple_repeat 2 41 0 10002 179 25 49 chr13 57694153 57695997 -62048901 + L1MA5 LINE L1 3038 4924 -1376 2392 84 3 3 chr13 57695997 57696307 -62048591 - AluY SINE Alu -1 310 1 10002 179 25 49 chr13 57696307 57696487 -62048411 + L1MA5 LINE L1 4924 5107 -1193 4836 102 9 9 chr13 57696487 57697185 -62047713 + L1PA14 LINE L1 5462 6159 -2 10002 179 25 49 chr13 57697185 57697206 -62047692 + L1MA5 LINE L1 5107 5127 -1173 1963 129 7 0 chr13 57697206 57697484 -62047414 + AluSq SINE Alu 1 280 -33 10002 179 25 49 chr13 57697484 57698722 -62046176 + L1MA5 LINE L1 5127 6300 0 21 57 0 0 chr13 57700263 57700298 -62044600 + AT_rich Low_complexity Low_complexity 1 35 0 23 86 0 0 chr13 57700565 57700623 -62044275 + AT_rich Low_complexity Low_complexity 1 58 0 36 23 0 0 chr13 57700945 57700988 -62043910 + AT_rich Low_complexity Low_complexity 1 43 0 21 89 0 0 chr13 57701041 57701097 -62043801 + AT_rich Low_complexity Low_complexity 1 56 0 683 100 0 0 chr13 57701917 57702007 -62042891 + 5S rRNA rRNA 1 90 -31 950 64 0 0 chr13 57702033 57702158 -62042740 - AluY SINE Alu 0 311 187 7908 222 22 37 chr13 57702521 57704665 -62040233 - L1MC3 LINE L1 0 8065 5890 338 74 19 0 chr13 57704665 57704719 -62040179 + (TG)n Simple_repeat Simple_repeat 1 55 0 7908 222 22 37 chr13 57704719 57706186 -62038712 - L1MC3 LINE L1 -2175 5890 3060 282 246 0 0 chr13 57706191 57706248 -62038650 - L1MC3 LINE L1 -5797 629 573 2669 192 78 7 chr13 57706251 57706799 -62038099 - L1MC3 LINE L1 -5811 615 29 930 188 0 0 chr13 57707725 57707869 -62037029 - AluSg/x SINE Alu -24 286 143 1141 198 103 15 chr13 57707995 57708258 -62036640 - AluJo SINE Alu -16 286 1 429 251 79 61 chr13 57708344 57708623 -62036275 - HAL1 LINE L1 -110 2397 2114 273 271 79 28 chr13 57708755 57708969 -62035929 - HAL1 LINE L1 -1232 1275 1051 13982 93 7 1 chr13 57709017 57711753 -62033145 - L1PA7 LINE L1 -13 6141 3393 554 338 63 23 chr13 57711805 57712399 -62032499 - HAL1 LINE L1 -1467 1040 404 873 106 8 0 chr13 57715832 57715964 -62028934 + L1PA15 LINE L1 6026 6158 -7 3966 24 0 0 chr13 57716395 57716859 -62028039 - L1PA3 LINE L1 0 6155 5692 3154 19 0 0 chr13 57716859 57717220 -62027678 + L1PA3 LINE L1 5360 5720 -435 192 77 0 0 chr13 57718120 57718146 -62026752 + (A)n Simple_repeat Simple_repeat 1 26 0 27 87 0 0 chr13 57719460 57719529 -62025369 + AT_rich Low_complexity Low_complexity 1 69 0 2107 84 0 3 chr13 57719949 57720281 -62024617 - AluY SINE Alu 0 331 1 24 32 0 0 chr13 57721002 57721033 -62023865 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr13 57721349 57721391 -62023507 + AT_rich Low_complexity Low_complexity 1 42 0 2105 92 0 3 chr13 57721397 57721726 -62023172 + AluY SINE Alu 1 328 0 750 289 90 65 chr13 57722051 57722528 -62022370 - LTR16C LTR ERVL 0 491 3 255 297 127 8 chr13 57722817 57722935 -62021963 + MLT1I LTR MaLR 1 132 -277 22 0 0 0 chr13 57725204 57725226 -62019672 + AT_rich Low_complexity Low_complexity 1 22 0 203 298 0 0 chr13 57725348 57725395 -62019503 - L2 LINE L2 -9 3263 3217 241 347 145 8 chr13 57725552 57725800 -62019098 - L2 LINE L2 -6 3307 3026 21 0 0 0 chr13 57726075 57726096 -62018802 + AT_rich Low_complexity Low_complexity 1 21 0 2756 139 15 18 chr13 57726306 57726760 -62018138 + MER31A LTR ERV1 2 454 -31 1302 198 45 100 chr13 57726869 57727288 -62017610 + MER31A-int LTR ERV1 13 408 -4528 920 183 85 111 chr13 57727446 57727823 -62017075 + MER31A-int LTR ERV1 883 1249 -3687 716 167 8 24 chr13 57727826 57727952 -62016946 + FLAM_C SINE Alu 2 125 -8 524 209 57 82 chr13 57727978 57728260 -62016638 + MER31A-int LTR ERV1 1239 1513 -3423 285 263 36 51 chr13 57728398 57728535 -62016363 + LOR1-int LTR ERV1 1339 1473 -6647 1727 186 0 3 chr13 57728666 57728957 -62015941 + AluJb SINE Alu 1 290 -22 196 175 0 25 chr13 57728958 57729038 -62015860 + (TA)n Simple_repeat Simple_repeat 1 78 0 318 173 0 37 chr13 57729061 57729142 -62015756 + LOR1-int LTR ERV1 4201 4278 -3842 4001 164 21 28 chr13 57729143 57729898 -62015000 + Tigger2 DNA MER2_type 2 751 -1967 944 230 71 8 chr13 57729962 57730201 -62014697 + Tigger2 DNA MER2_type 2465 2718 0 9272 196 66 40 chr13 57730201 57732620 -62012278 + LOR1-int LTR ERV1 2406 4886 -50 1516 160 0 75 chr13 57734787 57735118 -62009780 - AluSx SINE Alu -6 306 1 207 146 0 0 chr13 57736883 57736924 -62007974 + (CA)n Simple_repeat Simple_repeat 2 42 0 5680 126 96 9 chr13 57737036 57738522 -62006376 - L1PBa LINE L1 -3394 3468 1855 549 255 28 7 chr13 57738574 57738719 -62006179 + MIR SINE MIR 109 256 -6 2704 133 13 19 chr13 57739368 57739843 -62005055 - L1MA8 LINE L1 -226 6065 5594 1463 252 32 14 chr13 57739840 57740332 -62004566 + L1M4 LINE L1 4384 4884 -1262 * 8339 74 17 10 chr13 57740339 57741878 -62003020 + L1P3 LINE L1 4206 5754 -400 296 298 0 21 chr13 57743052 57743146 -62001752 + MER5A DNA MER1_type 76 167 -22 243 0 0 0 chr13 57744332 57744359 -62000539 + (T)n Simple_repeat Simple_repeat 1 27 0 7102 18 13 2 chr13 57744712 57745545 -61999353 - L1PA3 LINE L1 0 6155 5314 2619 23 0 0 chr13 57745796 57746101 -61998797 - L1P1 LINE L1 -458 5697 5393 3725 12 0 0 chr13 57746101 57746526 -61998372 + L1PA2 LINE L1 5731 6155 0 256 348 58 34 chr13 57746566 57746773 -61998125 + MIR SINE MIR 3 214 -48 1003 257 19 23 chr13 57747492 57747753 -61997145 - MIR SINE MIR 0 262 3 213 159 0 0 chr13 57748897 57748941 -61995957 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 203 62 16 chr13 57750218 57750282 -61994616 - MER5C DNA MER1_type -257 67 1 42 20 0 0 chr13 57750395 57750444 -61994454 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr13 57751200 57751223 -61993675 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2160 104 14 0 chr13 57751226 57751515 -61993383 - AluSc SINE Alu -16 293 1 1310 234 3 17 chr13 57752699 57752989 -61991909 + AluJo SINE Alu 1 286 -26 33 0 0 0 chr13 57753283 57753316 -61991582 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr13 57753455 57753483 -61991415 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 57753952 57753980 -61990918 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 57754988 57755017 -61989881 + AT_rich Low_complexity Low_complexity 1 29 0 295 160 66 38 chr13 57755126 57755232 -61989666 + L1ME1 LINE L1 5137 5245 -901 232 315 0 11 chr13 57755197 57755289 -61989609 - L1MC4 LINE L1 -1326 6716 6626 * 2677 251 59 14 chr13 57755284 57756152 -61988746 + L1ME1 LINE L1 5238 6147 -19 548 72 0 12 chr13 57756725 57756808 -61988090 + (TG)n Simple_repeat Simple_repeat 2 83 0 185 389 0 11 chr13 57758688 57758778 -61986120 - L2 LINE L2 -4 3268 3180 292 313 62 28 chr13 57761746 57761890 -61983008 - L2 LINE L2 -10 3303 3155 221 356 0 14 chr13 57762287 57762360 -61982538 + MIR SINE MIR 70 141 -67 325 283 50 10 chr13 57762364 57762463 -61982435 - L2 LINE L2 -8 3305 3203 23 92 0 0 chr13 57762476 57762541 -61982357 + AT_rich Low_complexity Low_complexity 1 65 0 252 289 36 12 chr13 57762768 57762851 -61982047 + L2 LINE L2 3221 3305 -8 23 0 0 0 chr13 57762929 57762952 -61981946 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr13 57763041 57763076 -61981822 + AT_rich Low_complexity Low_complexity 1 35 0 1966 111 0 21 chr13 57763535 57763848 -61981050 + AluSx SINE Alu 2 308 0 219 320 13 0 chr13 57763903 57763978 -61980920 - MIR SINE MIR -65 143 68 183 80 0 0 chr13 57765052 57765077 -61979821 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1183 298 72 52 chr13 57765171 57765822 -61979076 + MER69 DNA AcHobo 31 694 -532 522 197 113 0 chr13 57765844 57765986 -61978912 + MER69 DNA AcHobo 1651 1808 -718 1136 184 26 85 chr13 57765986 57766291 -61978607 + L1MA10 LINE L1 6048 6334 0 272 305 61 0 chr13 57766375 57766506 -61978392 + MER69 DNA AcHobo 1881 2019 -507 2516 128 46 14 chr13 57766553 57766968 -61977930 + MSTA LTR MaLR 1 428 0 8558 175 37 12 chr13 57766968 57768579 -61976319 + MSTA-int LTR MaLR 1 1651 0 2394 142 37 17 chr13 57768579 57768988 -61975910 + MSTA LTR MaLR 1 417 -11 21 0 0 0 chr13 57769084 57769105 -61975793 + AT_rich Low_complexity Low_complexity 1 21 0 243 343 19 19 chr13 57769208 57769316 -61975582 + L3 LINE CR1 1465 1572 -5 27 0 0 0 chr13 57769403 57769430 -61975468 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 57770817 57770842 -61974056 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr13 57771794 57771837 -61973061 + AT_rich Low_complexity Low_complexity 1 43 0 751 307 75 38 chr13 57772040 57772519 -61972379 + MER77 LTR ERV1 92 588 -17 21 57 0 0 chr13 57773145 57773180 -61971718 + AT_rich Low_complexity Low_complexity 1 35 0 220 211 0 42 chr13 57774530 57774601 -61970297 + T-rich Low_complexity Low_complexity 2 69 0 31 0 0 0 chr13 57776636 57776667 -61968231 + AT_rich Low_complexity Low_complexity 1 31 0 193 350 90 23 chr13 57776819 57776996 -61967902 - MIR SINE MIR -59 203 15 644 204 0 8 chr13 57778472 57778604 -61966294 - FRAM SINE Alu -8 168 38 29 70 0 0 chr13 57779398 57779455 -61965443 + AT_rich Low_complexity Low_complexity 1 57 0 948 286 62 80 chr13 57779745 57779901 -61964997 - L1ME3A LINE L1 -6 6164 6007 2029 120 3 20 chr13 57779901 57780201 -61964697 + AluSx SINE Alu 3 297 -15 948 286 62 80 chr13 57780201 57780519 -61964379 - L1ME3A LINE L1 -163 6007 5705 2166 118 40 37 chr13 57780519 57780893 -61964005 + THE1C LTR MaLR 1 375 0 948 286 62 80 chr13 57780893 57781170 -61963728 - L1ME3A LINE L1 -465 5705 5425 641 312 72 18 chr13 57781149 57781706 -61963192 - L1ME3A LINE L1 -1023 5123 4537 * 390 260 59 29 chr13 57781812 57782016 -61962882 - L1ME3A LINE L1 -1787 4359 4150 351 328 27 21 chr13 57782050 57782236 -61962662 - L1ME3A LINE L1 -1983 4163 3977 741 283 88 39 chr13 57782247 57782921 -61961977 - L1ME3A LINE L1 -2292 3854 3148 1315 332 61 34 chr13 57782957 57783761 -61961137 + HERV16 LTR ERVL 2296 3085 -1911 978 348 68 45 chr13 57783892 57784866 -61960032 + HERV16 LTR ERVL 3282 4277 -1487 500 341 59 44 chr13 57784842 57785232 -61959666 + HERV16 LTR ERVL 4448 4843 -921 * 304 206 0 16 chr13 57785398 57785461 -61959437 + HERV16 LTR ERVL 4618 4679 -317 444 375 63 17 chr13 57785766 57786115 -61958783 + LTR16A LTR ERVL 1 365 -85 1385 172 13 110 chr13 57786444 57786683 -61958215 - MLT1A2 LTR MaLR 0 374 186 1403 184 0 83 chr13 57786683 57787010 -61957888 - AluJo SINE Alu -12 300 1 1385 172 13 110 chr13 57787010 57787160 -61957738 - MLT1A2 LTR MaLR -188 186 23 636 265 85 83 chr13 57787406 57787946 -61956952 - HAL1 LINE L1 -207 2300 1760 242 305 0 12 chr13 57787966 57788048 -61956850 - MLT-int LTR MaLR -1634 101 21 2231 61 30 7 chr13 57788297 57788592 -61956306 + AluY SINE Alu 4 305 -6 2385 132 52 8 chr13 57788721 57789123 -61955775 + MSTA LTR MaLR 1 420 -8 437 299 129 14 chr13 57789456 57789673 -61955225 - MIR SINE MIR -1 261 20 334 319 42 58 chr13 57791393 57791584 -61953314 + LTR16A LTR ERVL 1 188 -262 236 319 54 36 chr13 57792068 57792234 -61952664 + MIR SINE MIR 81 249 -13 231 351 75 0 chr13 57793680 57793774 -61951124 - MIR SINE MIR -137 125 25 841 170 0 66 chr13 57794273 57794485 -61950413 - L1MA9 LINE L1 -10 6302 6105 1098 199 0 13 chr13 57794487 57794718 -61950180 + L1MA9 LINE L1 5891 6118 -194 261 274 49 20 chr13 57795218 57795320 -61949578 + HAL1b LINE L1 591 695 -653 229 254 0 17 chr13 57795326 57795385 -61949513 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 363 285 110 62 chr13 57795526 57795898 -61949000 + HAL1b LINE L1 890 1279 -69 745 107 36 0 chr13 57795914 57796026 -61948872 + FLAM_C SINE Alu 1 116 -17 29 47 0 0 chr13 57796058 57796101 -61948797 + AT_rich Low_complexity Low_complexity 1 43 0 378 292 17 8 chr13 57796465 57796585 -61948313 - L2 LINE L2 -1 3312 3192 2000 179 26 88 chr13 57798097 57798643 -61946255 + MER67D LTR ERV1 3 514 0 240 179 39 0 chr13 57799558 57799636 -61945262 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 77 0 0 chr13 57799745 57799797 -61945101 + AT_rich Low_complexity Low_complexity 1 52 0 270 336 96 8 chr13 57800742 57800867 -61944031 - MIR SINE MIR -120 142 7 247 293 42 54 chr13 57802007 57802174 -61942724 - L2 LINE L2 -12 3301 3137 2725 182 66 40 chr13 57804925 57805277 -61939621 + L1MA7 LINE L1 5593 5934 -357 2012 123 7 0 chr13 57805277 57805569 -61939329 + AluSp SINE Alu 1 294 -19 2725 182 66 40 chr13 57805569 57805897 -61939001 + L1MA7 LINE L1 5934 6291 0 1875 251 64 48 chr13 57805886 57806704 -61938194 + L1ME1 LINE L1 5173 6001 -165 * 337 172 126 23 chr13 57806805 57806862 -61938036 - L1MA10 LINE L1 -110 6224 6154 432 0 0 0 chr13 57806862 57806910 -61937988 + (TG)n Simple_repeat Simple_repeat 1 48 0 337 172 126 23 chr13 57806910 57806939 -61937959 - L1MA10 LINE L1 -180 6154 6129 1175 214 38 17 chr13 57806947 57807220 -61937678 - L1MB1 LINE L1 -114 6075 5794 210 118 0 0 chr13 57807220 57807254 -61937644 + (TG)n Simple_repeat Simple_repeat 1 34 0 1175 214 38 17 chr13 57807254 57807270 -61937628 - L1MB1 LINE L1 -395 5794 5780 602 164 39 0 chr13 57807694 57807798 -61937100 - L1MB1 LINE L1 -547 5787 5680 * 1149 155 163 16 chr13 57807780 57808038 -61936860 + L1MB1 LINE L1 5412 5707 -627 507 229 15 8 chr13 57808037 57808168 -61936730 + L1MA10 LINE L1 6201 6332 -2 * 980 255 36 6 chr13 57808193 57808522 -61936376 - L1M4 LINE L1 -2994 3152 2814 344 261 91 42 chr13 57808549 57808714 -61936184 - L1MCc LINE L1 -6107 316 144 203 228 35 0 chr13 57810270 57810327 -61934571 - MIR SINE MIR -37 225 167 565 216 11 74 chr13 57810327 57810503 -61934395 + MER104 DNA Tc2 1 165 -15 180 360 13 0 chr13 57810553 57810628 -61934270 - MIR SINE MIR -147 115 40 29 47 0 0 chr13 57811114 57811157 -61933741 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 57811180 57811203 -61933695 + AT_rich Low_complexity Low_complexity 1 23 0 484 316 47 117 chr13 57811205 57811591 -61933307 - L2 LINE L2 -2 3270 2912 2393 99 65 8 chr13 57812437 57812792 -61932106 + THE1C LTR MaLR 1 375 0 738 53 0 0 chr13 57812872 57812967 -61931931 - L1PA5 LINE L1 -332 5822 5728 2604 47 0 0 chr13 57812969 57813287 -61931611 + L1PA5 LINE L1 5824 6141 -13 234 0 0 0 chr13 57813290 57813316 -61931582 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 215 100 0 25 chr13 57813533 57813573 -61931325 + (TTAG)n Simple_repeat Simple_repeat 2 40 0 1404 264 98 0 chr13 57813715 57814121 -61930777 - L1MEc LINE L1 -5524 872 427 739 267 116 12 chr13 57814123 57814381 -61930517 - L1MEc LINE L1 -6019 377 93 182 385 115 0 chr13 57814464 57814646 -61930252 - L2 LINE L2 -591 2723 2521 180 0 0 0 chr13 57815281 57815301 -61929597 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 34 42 0 0 chr13 57815749 57815797 -61929101 + AT_rich Low_complexity Low_complexity 1 48 0 24 32 0 0 chr13 57815876 57815907 -61928991 + AT_rich Low_complexity Low_complexity 1 31 0 766 315 48 15 chr13 57816442 57816836 -61928062 + MER20B DNA MER1_type 183 589 -194 800 217 0 0 chr13 57816844 57817001 -61927897 + AluJb SINE Alu 145 301 -11 473 246 28 28 chr13 57817001 57817143 -61927755 + MER20B DNA MER1_type 606 747 -36 708 215 28 11 chr13 57817232 57817409 -61927489 - MER3 DNA MER1_type -6 203 24 12688 219 23 18 chr13 57817531 57822123 -61922775 - L1PA16 LINE L1 0 6869 2292 2636 135 73 8 chr13 57822123 57822603 -61922295 - MER9 LTR ERVK 0 511 1 12688 219 23 18 chr13 57822603 57824189 -61920709 - L1PA16 LINE L1 -4577 2292 715 1055 159 36 67 chr13 57824265 57824902 -61919996 + L1MA4 LINE L1 5254 6291 -5 1055 188 42 0 chr13 57824902 57825141 -61919757 + L1MA4 LINE L1 6047 6295 -5 39 0 0 0 chr13 57825644 57825683 -61919215 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr13 57825737 57825773 -61919125 + AT_rich Low_complexity Low_complexity 1 36 0 326 346 44 13 chr13 57825880 57826108 -61918790 + L1ME4a LINE L1 4802 5036 -1110 23 0 0 0 chr13 57826243 57826266 -61918632 + AT_rich Low_complexity Low_complexity 1 23 0 338 193 134 1 chr13 57826339 57826469 -61918429 + L1ME4a LINE L1 5315 5464 -719 361 339 111 33 chr13 57826528 57826953 -61917945 + L1ME4a LINE L1 5517 5974 -147 22 70 0 0 chr13 57827133 57827176 -61917722 + AT_rich Low_complexity Low_complexity 1 43 0 257 266 73 16 chr13 57827508 57827632 -61917266 + L3 LINE CR1 1148 1278 -299 24 32 0 0 chr13 57828573 57828604 -61916294 + AT_rich Low_complexity Low_complexity 1 31 0 280 316 53 26 chr13 57828995 57829109 -61915789 + L2 LINE L2 3187 3303 -10 277 141 0 26 chr13 57829180 57829258 -61915640 + (TA)n Simple_repeat Simple_repeat 2 77 0 31 58 0 0 chr13 57829297 57829349 -61915549 + AT_rich Low_complexity Low_complexity 1 52 0 354 357 62 39 chr13 57830136 57830542 -61914356 + L2 LINE L2 2437 2851 -463 679 161 0 7 chr13 57830577 57830720 -61914178 - AluSc SINE Alu -16 293 152 2277 228 60 60 chr13 57830827 57831057 -61913841 + L1MD2 LINE L1 5642 5871 -488 1365 210 17 28 chr13 57831057 57831348 -61913550 + AluJo SINE Alu 2 289 -23 2277 228 60 60 chr13 57831348 57831823 -61913075 + L1MD2 LINE L1 5870 6347 -12 1727 254 66 41 chr13 57831965 57832821 -61912077 - L1M4 LINE L1 -2229 3917 3035 2665 184 12 0 chr13 57832821 57833309 -61911589 - L1PA16 LINE L1 0 6166 5673 1937 223 32 2 chr13 57833309 57833740 -61911158 + L1P LINE L1 4025 4468 -1678 739 143 0 50 chr13 57834233 57834415 -61910483 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 205 235 0 31 chr13 57834424 57834522 -61910376 + CT-rich Low_complexity Low_complexity 2 96 0 1777 190 44 3 chr13 57835077 57835466 -61909432 - L1MC3 LINE L1 -11 7774 7370 517 297 55 16 chr13 57835491 57835673 -61909225 + MIR SINE MIR 17 205 -57 221 222 0 28 chr13 57835770 57835842 -61909056 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 57835954 57835975 -61908923 + AT_rich Low_complexity Low_complexity 1 21 0 429 275 0 11 chr13 57836003 57836131 -61908767 + L1MC/D LINE L1 5496 5617 -683 920 211 14 9 chr13 57836233 57836446 -61908452 + L1MC3 LINE L1 6945 7158 -627 2273 87 0 6 chr13 57837143 57837454 -61907444 + AluY SINE Alu 1 309 -2 661 324 125 19 chr13 57837461 57837982 -61906916 - L2 LINE L2 -1724 1590 1015 724 325 22 0 chr13 57838148 57838379 -61906519 + L2 LINE L2 2560 2795 -519 898 215 16 0 chr13 57838503 57838689 -61906209 + MER5A DNA MER1_type 1 189 0 449 299 12 30 chr13 57838825 57838989 -61905909 + L2 LINE L2 3153 3313 0 754 186 7 7 chr13 57839591 57839731 -61905167 + AluSx SINE Alu 39 178 -134 197 381 72 0 chr13 57839831 57839928 -61904970 + L2 LINE L2 3205 3308 -5 258 268 37 37 chr13 57840064 57840146 -61904752 - L3 LINE CR1 -1 1576 1495 205 300 171 76 chr13 57840488 57840698 -61904200 - L3 LINE CR1 -833 744 515 258 286 0 0 chr13 57841375 57841445 -61903453 + (CA)n Simple_repeat Simple_repeat 2 71 0 195 252 27 0 chr13 57842154 57842265 -61902633 + (TA)n Simple_repeat Simple_repeat 2 115 0 211 264 121 22 chr13 57842541 57842632 -61902266 + L3 LINE CR1 1467 1566 -11 192 295 135 26 chr13 57842737 57842893 -61902005 - L2 LINE L2 -8 3305 3133 25 31 0 0 chr13 57843262 57843294 -61901604 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr13 57845935 57845969 -61898929 + AT_rich Low_complexity Low_complexity 1 34 0 749 256 85 52 chr13 57846249 57846554 -61898344 - L1ME1 LINE L1 -1 6165 5851 304 224 82 10 chr13 57846563 57846661 -61898237 + MLT1C LTR MaLR 3 107 -398 686 249 43 5 chr13 57846686 57846871 -61898027 + MLT1C LTR MaLR 276 467 0 1114 230 101 68 chr13 57846886 57847390 -61897508 - L1ME1 LINE L1 -341 5825 5305 1652 220 68 19 chr13 57847401 57847637 -61897261 - MLT1C LTR MaLR -4 463 240 189 0 0 0 chr13 57847637 57847658 -61897240 + (TG)n Simple_repeat Simple_repeat 2 22 0 1652 220 68 19 chr13 57847658 57847678 -61897220 - MLT1C LTR MaLR -227 240 222 2384 61 0 6 chr13 57847678 57847989 -61896909 - AluY SINE Alu -2 309 1 1652 220 68 19 chr13 57847989 57848159 -61896739 - MLT1C LTR MaLR -245 222 15 23 33 0 0 chr13 57848400 57848430 -61896468 + AT_rich Low_complexity Low_complexity 1 30 0 357 373 15 0 chr13 57848523 57848657 -61896241 - L2 LINE L2 -1333 1981 1846 2000 134 6 27 chr13 57849230 57849595 -61895303 + L1PA10 LINE L1 5811 6167 -1 2061 228 53 53 chr13 57851476 57852921 -61891977 - L1MC/D LINE L1 -527 5715 4282 23272 183 33 39 chr13 57853036 57857592 -61887306 - L1P4 LINE L1 -666 5817 1328 2769 79 0 0 chr13 57857592 57857945 -61886953 - THE1A LTR MaLR -2 353 1 23272 183 33 39 chr13 57857945 57859258 -61885640 - L1P4 LINE L1 -5155 1328 8 196 316 35 0 chr13 57860554 57860611 -61884287 - L2 LINE L2 -5 3267 3209 2071 169 28 3 chr13 57860878 57861233 -61883665 + THE1B LTR MaLR 1 364 0 10060 110 26 36 chr13 57861233 57862830 -61882068 + THE1B-int LTR MaLR 1 1580 0 2297 124 28 6 chr13 57862830 57863186 -61881712 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr13 57863418 57863439 -61881459 + AT_rich Low_complexity Low_complexity 1 21 0 2289 105 73 14 chr13 57864016 57864360 -61880538 + THE1B LTR MaLR 1 364 0 10513 103 43 11 chr13 57864360 57865159 -61879739 + THE1B-int LTR MaLR 1 772 -808 2313 103 0 3 chr13 57865159 57865471 -61879427 + AluSp SINE Alu 1 311 -2 10513 103 43 11 chr13 57865471 57866201 -61878697 + THE1B-int LTR MaLR 772 1580 0 1983 145 73 14 chr13 57866201 57866545 -61878353 + THE1B LTR MaLR 1 364 0 355 272 204 14 chr13 57868270 57868417 -61876481 - MER5B DNA MER1_type 0 178 4 23 0 0 0 chr13 57868844 57868867 -61876031 + AT_rich Low_complexity Low_complexity 1 23 0 445 145 211 40 chr13 57868875 57869027 -61875871 - L1MC3 LINE L1 -8 7777 7600 37 23 0 0 chr13 57870575 57870619 -61874279 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr13 57871201 57871227 -61873671 + AT_rich Low_complexity Low_complexity 1 26 0 773 179 65 0 chr13 57871728 57871912 -61872986 + L1MA8 LINE L1 6094 6289 -2 21 0 0 0 chr13 57871915 57871936 -61872962 + AT_rich Low_complexity Low_complexity 1 21 0 239 286 48 0 chr13 57872313 57872397 -61872501 - L1MC/D LINE L1 -2300 5508 5421 2363 214 41 7 chr13 57872667 57873129 -61871769 + LTR42 LTR ERVL 18 495 0 27 73 0 0 chr13 57874445 57874500 -61870398 + AT_rich Low_complexity Low_complexity 1 55 0 318 365 13 19 chr13 57874746 57874902 -61869996 - MIR SINE MIR 0 262 108 216 285 8 65 chr13 57874966 57875089 -61869809 + MIR SINE MIR 147 262 0 760 222 28 0 chr13 57976580 57976756 -61768142 + MLT2D LTR ERVL 234 414 0 44 46 0 0 chr13 57976917 57976982 -61767916 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr13 57978798 57978826 -61766072 + AT_rich Low_complexity Low_complexity 1 28 0 242 368 60 8 chr13 57980311 57980428 -61764470 + MIR SINE MIR 7 129 -133 21 36 0 0 chr13 57980508 57980536 -61764362 + AT_rich Low_complexity Low_complexity 1 28 0 194 354 0 0 chr13 57980643 57980691 -61764207 + L2 LINE L2 3214 3261 -11 426 356 7 0 chr13 57981009 57981158 -61763740 - MER5B DNA MER1_type -16 162 13 250 265 174 0 chr13 57981253 57981351 -61763547 - L3 LINE CR1 -108 1469 1355 271 186 0 17 chr13 57981702 57981761 -61763137 - MLT1F1 LTR MaLR 0 567 510 970 258 49 28 chr13 57981836 57982123 -61762775 - MLT1F1 LTR MaLR -273 294 2 244 338 94 6 chr13 57982204 57982364 -61762534 - L3 LINE CR1 -805 772 599 2204 97 28 0 chr13 57982452 57982742 -61762156 - AluSx SINE Alu -14 298 1 330 26 0 0 chr13 57983575 57983614 -61761284 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr13 57983685 57983706 -61761192 + AT_rich Low_complexity Low_complexity 1 21 0 227 286 14 29 chr13 57984815 57984885 -61760013 + L2 LINE L2 3233 3301 -12 1871 166 0 19 chr13 57984885 57985199 -61759699 + AluSx SINE Alu 1 308 -4 2333 158 49 20 chr13 57985591 57986039 -61758859 - LOR1b LTR ERV1 0 461 1 993 173 140 0 chr13 57986141 57986309 -61758589 + MER1A DNA MER1_type 1 197 -332 3362 128 242 6 chr13 57986309 57986974 -61757924 - LTR12 LTR ERV1 0 826 5 2429 175 13 23 chr13 57986988 57987593 -61757305 - pTR5 LTR ERV1 -1092 1346 748 2325 111 15 9 chr13 57987593 57987936 -61756962 + MER1A DNA MER1_type 185 529 0 835 211 91 43 chr13 57988140 57988349 -61756549 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr13 57989195 57989217 -61755681 + AT_rich Low_complexity Low_complexity 1 22 0 424 281 87 35 chr13 57989402 57989724 -61755174 - L1ME LINE L1 -335 5786 5471 233 270 16 0 chr13 57991615 57991678 -61753220 + (TA)n Simple_repeat Simple_repeat 1 64 0 37 0 0 0 chr13 57992143 57992180 -61752718 + AT_rich Low_complexity Low_complexity 1 37 0 1303 188 23 0 chr13 57994540 57994801 -61750097 + L1MC2 LINE L1 6064 6330 -14 1778 83 0 40 chr13 57994919 57995197 -61749701 - AluY SINE Alu 0 307 40 22 35 0 0 chr13 57995285 57995314 -61749584 + AT_rich Low_complexity Low_complexity 1 29 0 450 170 116 0 chr13 57995317 57995429 -61749469 + L1MA9 LINE L1 6188 6312 0 23 0 0 0 chr13 57995537 57995560 -61749338 + AT_rich Low_complexity Low_complexity 1 23 0 288 303 18 23 chr13 57996053 57996180 -61748718 + MER5A DNA MER1_type 11 138 -40 436 152 305 0 chr13 57996203 57996308 -61748590 + MER1B DNA MER1_type 1 137 -160 402 158 171 0 chr13 57996303 57996385 -61748513 + MER1B DNA MER1_type 42 137 -160 * 1581 133 96 35 chr13 57996380 57996726 -61748172 + MER1B DNA MER1_type 42 339 0 441 0 0 0 chr13 57996782 57996831 -61748067 + (TG)n Simple_repeat Simple_repeat 1 49 0 432 309 12 19 chr13 57999224 57999386 -61745512 - L3b LINE CR1 -318 1265 1105 1932 148 0 20 chr13 58000810 58001114 -61743784 + AluSx SINE Alu 1 298 -14 226 331 81 24 chr13 58002440 58002564 -61742334 + L2 LINE L2 2932 3062 -210 25 51 0 0 chr13 58002817 58002856 -61742042 + AT_rich Low_complexity Low_complexity 1 39 0 670 173 13 53 chr13 58003200 58003350 -61741548 + MLT1A1 LTR MaLR 37 180 -185 1828 142 42 0 chr13 58003654 58003942 -61740956 - AluSx SINE Alu -11 301 2 15120 158 20 34 chr13 58004436 58009450 -61735448 - L1MA1 LINE L1 0 7721 2737 411 39 0 0 chr13 58009450 58009502 -61735396 + MADE1 DNA Mariner 1 52 -28 15120 158 20 34 chr13 58009502 58009685 -61735213 - L1MA1 LINE L1 -4984 2737 2553 231 323 15 0 chr13 58011432 58011497 -61733401 + LTR67 LTR ERVL 113 178 -379 248 314 81 17 chr13 58011641 58011813 -61733085 + LTR67 LTR ERVL 353 535 -22 21 71 0 0 chr13 58013849 58013891 -61731007 + AT_rich Low_complexity Low_complexity 1 42 0 186 71 0 0 chr13 58013958 58013986 -61730912 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr13 58014477 58014498 -61730400 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 58015293 58015325 -61729573 + AT_rich Low_complexity Low_complexity 1 32 0 369 0 0 0 chr13 58015422 58015463 -61729435 + (TA)n Simple_repeat Simple_repeat 1 41 0 361 280 154 28 chr13 58017409 58017552 -61727346 - MER5B DNA MER1_type -1 177 17 18455 56 1 0 chr13 58018898 58021195 -61723703 - L1P LINE L1 -3838 2308 10 7122 25 1 0 chr13 58021195 58022035 -61722863 + L1PA4 LINE L1 5315 6155 0 1544 148 13 0 chr13 58022231 58022494 -61722404 - AluSx SINE Alu 0 315 50 22 35 0 0 chr13 58022622 58022651 -61722247 + AT_rich Low_complexity Low_complexity 1 29 0 1924 87 60 0 chr13 58022918 58023216 -61721682 - L1PA8 LINE L1 -3 6169 5854 2154 201 31 2 chr13 58023252 58023666 -61721232 + MSTB LTR MaLR 1 426 0 6842 56 16 1 chr13 58024110 58025476 -61719422 + L1PA7 LINE L1 4790 6141 -13 279 335 28 63 chr13 58025814 58025907 -61718991 + L2 LINE L2 2378 2473 -841 2317 71 0 14 chr13 58025907 58026201 -61718697 - AluY SINE Alu -21 290 1 279 335 28 63 chr13 58026201 58026361 -61718537 + L2 LINE L2 2473 2622 -692 185 296 0 128 chr13 58027034 58027159 -61717739 - MIR SINE MIR -70 192 84 290 299 82 22 chr13 58028155 58028289 -61716609 + MER117 DNA MER1_type 30 171 -26 4040 138 12 3 chr13 58028496 58029140 -61715758 + L1PA15 LINE L1 5513 6162 -3 594 334 71 30 chr13 58029431 58029898 -61715000 - LTR16C LTR ERVL -2 489 4 308 24 0 24 chr13 58031616 58031658 -61713240 + (TAA)n Simple_repeat Simple_repeat 2 42 0 500 373 28 0 chr13 58031658 58031910 -61712988 - MIR SINE MIR -3 259 1 687 282 151 28 chr13 58032849 58033390 -61711508 - MLT1G1 LTR MaLR 0 590 4 23 0 0 0 chr13 58033477 58033500 -61711398 + AT_rich Low_complexity Low_complexity 1 23 0 274 351 20 0 chr13 58035598 58035749 -61709149 + GA-rich Low_complexity Low_complexity 2 155 0 280 291 24 92 chr13 58035832 58036038 -61708860 - MLT1L LTR MaLR -421 194 3 183 388 33 40 chr13 58036387 58036539 -61708359 - L2 LINE L2 0 3272 3122 347 342 19 32 chr13 58037329 58037484 -61707414 + MIR3 SINE MIR 42 194 -14 407 300 95 21 chr13 58037665 58037855 -61707043 - MIR SINE MIR -18 244 41 2431 55 3 0 chr13 58041400 58041693 -61703205 + AluY SINE Alu 1 294 -17 180 417 34 5 chr13 58042103 58042307 -61702591 - MIR SINE MIR -6 256 47 189 213 0 0 chr13 58042568 58042615 -61702283 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 2166 81 32 0 chr13 58043963 58044248 -61700650 + AluSq SINE Alu 3 296 -17 304 265 6 43 chr13 58046649 58046811 -61698087 + HAL1b LINE L1 618 773 -575 248 269 115 67 chr13 58046819 58047027 -61697871 + HAL1b LINE L1 830 1047 -301 314 283 145 30 chr13 58047109 58047275 -61697623 + HAL1b LINE L1 1164 1348 0 37 62 0 0 chr13 58047412 58047477 -61697421 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr13 58049647 58049672 -61695226 + AT_rich Low_complexity Low_complexity 1 25 0 41 36 0 0 chr13 58050254 58050309 -61694589 + AT_rich Low_complexity Low_complexity 1 55 0 343 208 0 120 chr13 58051876 58052001 -61692897 - L1ME LINE L1 -609 5561 5452 460 312 72 52 chr13 58052022 58052637 -61692261 - L1ME LINE L1 -758 5388 4762 401 306 65 34 chr13 58052719 58053101 -61691797 - L1ME LINE L1 -1880 4266 3873 899 276 119 30 chr13 58053242 58053811 -61691087 - L1ME LINE L1 -2760 3386 2712 1999 102 6 50 chr13 58053811 58054089 -61690809 + AluSg SINE Alu 1 265 -45 291 28 0 0 chr13 58054089 58054125 -61690773 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1999 102 6 50 chr13 58054125 58054168 -61690730 + AluSg SINE Alu 265 308 -2 899 276 119 30 chr13 58054168 58054466 -61690432 - L1ME LINE L1 -3434 2712 2442 2377 153 35 5 chr13 58054606 58055133 -61689765 + L1MA9 LINE L1 5154 5695 -596 1896 139 18 15 chr13 58055135 58055472 -61689426 + L1MA8 LINE L1 5946 6283 -8 22 0 0 0 chr13 58055473 58055495 -61689403 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 58055930 58055953 -61688945 + (TA)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr13 58055980 58056007 -61688891 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 58056137 58056160 -61688738 + AT_rich Low_complexity Low_complexity 1 23 0 2152 114 7 0 chr13 58056165 58056463 -61688435 - AluSx SINE Alu -12 300 1 499 280 163 25 chr13 58056481 58057003 -61687895 - L1MEc LINE L1 -1299 5083 4490 1362 165 23 38 chr13 58057032 58057298 -61687600 - AluJo SINE Alu -48 264 3 1327 292 39 45 chr13 58057301 58058092 -61686806 - L1MEc LINE L1 -1886 4496 3711 970 254 138 67 chr13 58058162 58058801 -61686097 - L1MEc LINE L1 -2956 3426 2834 2370 163 19 37 chr13 58058801 58059285 -61685613 + L1MA9 LINE L1 5823 6297 -15 970 254 138 67 chr13 58059285 58059380 -61685518 - L1MEc LINE L1 -3548 2834 2747 2111 123 7 0 chr13 58059380 58059690 -61685208 - AluSx SINE Alu 0 312 1 970 254 138 67 chr13 58059690 58059973 -61684925 - L1MEc LINE L1 -3635 2747 2329 343 349 56 24 chr13 58060101 58060476 -61684422 - L1MEc LINE L1 -5918 645 259 431 269 63 62 chr13 58060916 58061313 -61683585 - L1MDb LINE L1 -4712 1549 1091 399 278 86 66 chr13 58061513 58061862 -61683036 - L1MDb LINE L1 -5165 905 550 196 308 19 0 chr13 58065238 58065290 -61679608 - L3 LINE CR1 -1 1576 1524 189 367 78 0 chr13 58065759 58065849 -61679049 - L2 LINE L2 -48 3265 3169 2901 207 61 19 chr13 58066698 58067385 -61677513 - LTR28 LTR ERV1 -304 716 1 183 329 0 14 chr13 58067792 58067865 -61677033 - L2 LINE L2 -1437 1877 1806 344 307 20 0 chr13 58067870 58067971 -61676927 + L2 LINE L2 3160 3262 -10 196 349 105 0 chr13 58067999 58068085 -61676813 - L2 LINE L2 -1522 1792 1698 184 394 81 0 chr13 58069274 58069373 -61675525 - L2 LINE L2 -22 3250 3144 7538 194 12 6 chr13 58070944 58073450 -61671448 - L1PB4 LINE L1 0 6156 3637 246 227 0 82 chr13 58073758 58073855 -61671043 + MER67C LTR ERV1 1 89 -425 1268 149 0 158 chr13 58073892 58074227 -61670671 - AluJb SINE Alu -19 283 2 812 228 205 48 chr13 58074228 58074662 -61670236 + MER67C LTR ERV1 72 510 -4 494 193 29 14 chr13 58074751 58074891 -61670007 + L1M4 LINE L1 4980 5121 -1025 1932 192 0 11 chr13 58075275 58075644 -61669254 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr13 58076675 58076695 -61668203 + (TGG)n Simple_repeat Simple_repeat 1 20 0 32 67 0 0 chr13 58077481 58077541 -61667357 + AT_rich Low_complexity Low_complexity 1 60 0 3204 219 211 65 chr13 58077767 58078552 -61666346 + L1MDa LINE L1 22 691 -5849 1584 194 92 6 chr13 58078552 58078888 -61666010 + MLT1A1 LTR MaLR 1 365 0 3204 219 211 65 chr13 58078888 58079203 -61665695 + L1MDa LINE L1 691 959 -5581 180 77 0 0 chr13 58079203 58079229 -61665669 + (TG)n Simple_repeat Simple_repeat 2 27 0 3204 219 211 65 chr13 58079229 58079522 -61665376 + L1MDa LINE L1 959 1619 -4921 228 348 9 0 chr13 58079742 58079854 -61665044 + L1MB8 LINE L1 88 200 -6342 4738 228 42 44 chr13 58079915 58082227 -61662671 + L1MB8 LINE L1 4154 6457 -219 28 0 0 0 chr13 58082530 58082558 -61662340 + AT_rich Low_complexity Low_complexity 1 28 0 27 81 0 0 chr13 58084937 58084999 -61659899 + AT_rich Low_complexity Low_complexity 1 62 0 25 31 0 0 chr13 58086413 58086445 -61658453 + AT_rich Low_complexity Low_complexity 1 32 0 387 280 80 47 chr13 58087074 58087224 -61657674 + MIR3 SINE MIR 42 196 -12 225 132 0 0 chr13 58088655 58088693 -61656205 + (T)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr13 58090020 58090050 -61654848 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 58091108 58091137 -61653761 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 58092563 58092584 -61652314 + AT_rich Low_complexity Low_complexity 1 21 0 218 327 65 54 chr13 58092892 58093060 -61651838 + MIR SINE MIR 47 216 -46 21 57 0 0 chr13 58093442 58093477 -61651421 + AT_rich Low_complexity Low_complexity 1 35 0 212 0 0 35 chr13 58093972 58094001 -61650897 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2080 90 0 33 chr13 58094013 58094314 -61650584 - AluY SINE Alu -17 294 4 2481 247 85 26 chr13 58094500 58095086 -61649812 - L1MB7 LINE L1 -9 6175 5523 6968 47 15 1 chr13 58095086 58096452 -61648446 + L1PA7 LINE L1 4765 6152 -2 2481 247 85 26 chr13 58096452 58096845 -61648053 - L1MB7 LINE L1 -661 5523 5155 22 80 0 0 chr13 58096852 58096902 -61647996 + AT_rich Low_complexity Low_complexity 1 50 0 47 33 0 0 chr13 58097060 58097121 -61647777 + AT_rich Low_complexity Low_complexity 1 61 0 740 331 101 4 chr13 58097596 58097874 -61647024 - MLT2E LTR ERVL -223 405 101 430 344 84 0 chr13 58098150 58098423 -61646475 + L1ME LINE L1 5490 5785 -336 2503 145 84 9 chr13 58098499 58098961 -61645937 - LOR1a LTR ERV1 0 497 1 596 280 93 28 chr13 58099956 58100170 -61644728 + MIR SINE MIR 2 229 -33 446 239 187 7 chr13 58100389 58100544 -61644354 - MIR SINE MIR -19 243 61 373 216 216 0 chr13 58101145 58101256 -61643642 + Tigger7 DNA MER2_type 2350 2484 -3 350 182 30 0 chr13 58101260 58101326 -61643572 - MLT1C LTR MaLR -390 77 10 289 355 32 0 chr13 58101367 58101491 -61643407 + MIR3 SINE MIR 61 188 -20 1517 244 45 8 chr13 58101627 58101782 -61643116 - MLT1A1 LTR MaLR 0 365 217 2360 161 67 7 chr13 58101782 58102217 -61642681 - LOR1b LTR ERV1 0 461 1 1517 244 45 8 chr13 58102217 58102413 -61642485 - MLT1A1 LTR MaLR -148 217 1 1733 210 22 28 chr13 58102647 58103009 -61641889 + MLT1A1 LTR MaLR 1 360 -5 345 47 0 0 chr13 58103898 58103941 -61640957 + (CA)n Simple_repeat Simple_repeat 2 44 0 451 113 25 0 chr13 58104466 58104546 -61640352 + CT-rich Low_complexity Low_complexity 3 84 0 241 339 0 0 chr13 58105007 58105072 -61639826 + MIR SINE MIR 65 129 -79 26 0 0 0 chr13 58105132 58105158 -61639740 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr13 58105349 58105383 -61639515 + AT_rich Low_complexity Low_complexity 1 34 0 235 246 0 0 chr13 58105397 58105454 -61639444 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 56 0 0 chr13 58105710 58105746 -61639152 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr13 58106845 58106877 -61638021 + AT_rich Low_complexity Low_complexity 1 32 0 2188 70 3 11 chr13 58106981 58107309 -61637589 + AluY SINE Alu 1 326 0 237 330 47 0 chr13 58107492 58107598 -61637300 + MER94 DNA DNA 24 134 0 382 355 104 44 chr13 58108581 58108947 -61635951 - L3 LINE CR1 -87 1490 1103 438 234 135 0 chr13 58112000 58112111 -61632787 - L2 LINE L2 0 3313 3188 1958 122 0 7 chr13 58112225 58112503 -61632395 + AluSx SINE Alu 1 276 -36 39 22 0 0 chr13 58112511 58112557 -61632341 + AT_rich Low_complexity Low_complexity 1 46 0 1399 227 3 22 chr13 58113649 58113966 -61630932 - AluJo SINE Alu -1 311 1 22 0 0 0 chr13 58114743 58114765 -61630133 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr13 58114844 58114869 -61630029 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 283 216 11 11 chr13 58114874 58114962 -61629936 + (TA)n Simple_repeat Simple_repeat 2 89 0 1279 245 41 48 chr13 58116230 58116507 -61628391 - MLT1C LTR MaLR -8 459 185 722 182 0 8 chr13 58116507 58116639 -61628259 - FLAM_C SINE Alu -2 131 1 1279 245 41 48 chr13 58116639 58116823 -61628075 - MLT1C LTR MaLR -282 185 1 25 0 0 0 chr13 58117526 58117551 -61627347 + AT_rich Low_complexity Low_complexity 1 25 0 2287 112 0 0 chr13 58117818 58118131 -61626767 - AluSq SINE Alu 0 313 1 1590 191 29 41 chr13 58118490 58118835 -61626063 + MLT1A1 LTR MaLR 25 365 0 25 19 8 0 chr13 58119094 58119169 -61625729 + AT_rich Low_complexity Low_complexity 1 32 0 828 292 89 29 chr13 58119334 58119817 -61625081 - L1ME3A LINE L1 -15 6155 5644 1962 142 0 0 chr13 58119972 58120261 -61624637 - AluSx SINE Alu -23 289 1 912 279 22 8 chr13 58120261 58120547 -61624351 - L1P5 LINE L1 -541 5610 5315 257 266 0 0 chr13 58121310 58121374 -61623524 - L1MEd LINE L1 -5102 1017 954 775 195 0 0 chr13 58121379 58121507 -61623391 - FLAM_A SINE Alu -5 128 1 264 375 48 0 chr13 58122489 58122593 -61622305 + L2 LINE L2 3125 3233 -39 22 35 0 0 chr13 58122758 58122787 -61622111 + AT_rich Low_complexity Low_complexity 1 29 0 13029 227 23 13 chr13 58123596 58127493 -61617405 + L1PA16 LINE L1 1721 5674 -492 189 0 0 0 chr13 58127493 58127514 -61617384 + (TAA)n Simple_repeat Simple_repeat 1 21 0 13029 227 23 13 chr13 58127514 58128007 -61616891 + L1PA16 LINE L1 5674 6160 -6 210 335 152 25 chr13 58128132 58128329 -61616569 + MIR SINE MIR 17 238 -24 26 64 0 0 chr13 58128376 58128423 -61616475 + AT_rich Low_complexity Low_complexity 1 47 0 1763 153 31 3 chr13 58129206 58129500 -61615398 + MER47A DNA MER2_type 65 366 0 544 162 19 0 chr13 58129500 58129605 -61615293 - L1 LINE L1 -876 5270 5164 217 361 0 0 chr13 58129627 58129710 -61615188 - MIR SINE MIR -128 134 52 454 173 13 0 chr13 58130216 58130291 -61614607 + MLT1A1 LTR MaLR 12 87 -278 466 35 0 58 chr13 58130291 58130377 -61614521 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 2067 108 10 10 chr13 58130378 58130675 -61614223 - AluSx SINE Alu -15 297 1 1227 212 17 34 chr13 58130676 58130755 -61614143 + MLT1A1 LTR MaLR 75 154 -211 2057 85 68 0 chr13 58130755 58131036 -61613862 + AluSp SINE Alu 1 300 -13 1227 212 17 34 chr13 58131036 58131248 -61613650 + MLT1A1 LTR MaLR 154 361 -4 221 337 0 0 chr13 58132723 58132824 -61612074 + A-rich Low_complexity Low_complexity 1 101 0 651 343 20 12 chr13 58133572 58133817 -61611081 + MIR SINE MIR 2 248 -14 365 307 32 73 chr13 58134361 58134579 -61610319 - MIR SINE MIR -1 261 53 914 63 79 0 chr13 58134660 58134787 -61610111 + MER85 DNA T2_type 1 137 -2 2094 57 78 0 chr13 58135074 58135356 -61609542 + AluY SINE Alu 1 304 -7 661 277 140 96 chr13 58136752 58137253 -61607645 - MLT1G1 LTR MaLR 0 595 20 425 315 150 43 chr13 58137406 58137485 -61607413 - L2 LINE L2 -290 2982 2913 1771 160 163 3 chr13 58137485 58137854 -61607044 - MSTA LTR MaLR 0 428 1 425 315 150 43 chr13 58137854 58138331 -61606567 - L2 LINE L2 -359 2913 2373 273 254 282 0 chr13 58138485 58138595 -61606303 + MIR SINE MIR 122 262 0 1313 114 5 0 chr13 58138926 58139119 -61605779 + L1PB1 LINE L1 5957 6150 -1 2750 16 0 0 chr13 58139140 58139450 -61605448 + AluYb8 SINE Alu 1 310 -8 264 284 202 9 chr13 58139780 58139889 -61605009 - L2 LINE L2 -4 3309 3180 688 330 74 26 chr13 58140035 58140489 -61604409 - L2 LINE L2 -302 3011 2534 294 345 132 0 chr13 58142485 58142659 -61602239 + MIR SINE MIR 66 262 0 28 71 0 0 chr13 58142666 58142722 -61602176 + AT_rich Low_complexity Low_complexity 1 56 0 1038 221 25 8 chr13 58142748 58142983 -61601915 - AluJb SINE Alu -54 258 20 422 299 16 8 chr13 58142994 58143121 -61601777 + MLT1F1 LTR MaLR 1 128 -439 23 0 0 0 chr13 58145441 58145464 -61599434 + AT_rich Low_complexity Low_complexity 1 23 0 307 247 124 62 chr13 58146105 58146173 -61598725 - MLT1J LTR MaLR -215 235 173 2337 90 7 0 chr13 58146173 58146474 -61598424 + AluSx SINE Alu 1 303 -9 307 247 124 62 chr13 58146474 58146599 -61598299 - MLT1J LTR MaLR -277 173 64 1859 152 37 35 chr13 58146750 58147124 -61597774 + THE1C LTR MaLR 1 375 0 279 0 0 0 chr13 58147181 58147212 -61597686 + (CA)n Simple_repeat Simple_repeat 2 32 0 1165 291 63 41 chr13 58147268 58147743 -61597155 + MLT2D LTR ERVL 1 476 -44 234 0 0 0 chr13 58147743 58147769 -61597129 + (TG)n Simple_repeat Simple_repeat 2 27 0 1165 291 63 41 chr13 58147769 58147816 -61597082 + MLT2D LTR ERVL 476 520 0 31 0 0 0 chr13 58147826 58147857 -61597041 + AT_rich Low_complexity Low_complexity 1 31 0 733 300 33 29 chr13 58148839 58149146 -61595752 - HAL1b LINE L1 -796 552 245 2019 166 58 19 chr13 58150951 58151367 -61593531 - MSTB1 LTR MaLR 0 432 1 2023 136 0 13 chr13 58152146 58152454 -61592444 - AluSx SINE Alu -8 304 1 189 0 0 0 chr13 58153054 58153075 -61591823 + (CAA)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chr13 58153896 58153923 -61590975 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr13 58153939 58153986 -61590912 + AT_rich Low_complexity Low_complexity 1 47 0 2144 108 20 0 chr13 58154640 58154935 -61589963 + AluSx SINE Alu 3 303 -9 222 150 0 0 chr13 58154935 58154975 -61589923 + (GA)n Simple_repeat Simple_repeat 1 40 0 22 35 0 0 chr13 58155042 58155071 -61589827 + AT_rich Low_complexity Low_complexity 1 29 0 216 158 0 0 chr13 58155259 58155297 -61589601 + (TA)n Simple_repeat Simple_repeat 2 39 0 262 351 18 13 chr13 58155425 58155650 -61589248 - L1ME LINE L1 -373 5748 5523 207 0 0 0 chr13 58155735 58155758 -61589140 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6294 97 5 5 chr13 58155763 58156647 -61588251 - L1PA10 LINE L1 -17 6151 5268 1204 163 5 0 chr13 58156742 58156938 -61587960 + MER4C-int LTR ERV1 6393 6589 -9 2390 132 76 38 chr13 58156965 58157411 -61587487 + MER4C LTR ERV1 3 465 0 3467 185 31 22 chr13 58157466 58158462 -61586436 + L1P4 LINE L1 4543 5541 -625 393 22 0 0 chr13 58159271 58159317 -61585581 + (TG)n Simple_repeat Simple_repeat 2 47 0 224 287 22 22 chr13 58159565 58159701 -61585197 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 1137 149 6 6 chr13 58159884 58160048 -61584850 - AluSg/x SINE Alu -14 298 132 2377 67 0 41 chr13 58160048 58160364 -61584534 - AluY SINE Alu -8 303 1 1137 149 6 6 chr13 58160364 58160380 -61584518 - AluSg/x SINE Alu -179 133 118 264 130 0 0 chr13 58160729 58160775 -61584123 + (TG)n Simple_repeat Simple_repeat 2 47 0 518 56 0 0 chr13 58160936 58161008 -61583890 - L1PA2 LINE L1 -2 6153 6082 1243 109 97 15 chr13 58161010 58161224 -61583674 + pTR5 LTR ERV1 8 203 -2235 7690 26 0 1 chr13 58161224 58162196 -61582702 + L1PA3 LINE L1 5182 6152 -3 1243 109 97 15 chr13 58162196 58162304 -61582594 + pTR5 LTR ERV1 203 2438 0 532 178 129 64 chr13 58162304 58162534 -61582364 - SATR1 Satellite Satellite -117 245 1 2119 183 21 38 chr13 58162649 58163075 -61581823 + MER74A LTR ERVL 3 421 -137 2293 100 3 0 chr13 58163625 58163925 -61580973 - AluSc SINE Alu -8 301 1 2411 62 7 13 chr13 58165359 58165667 -61579231 + AluYa5 SINE Alu 1 306 -5 231 261 14 29 chr13 58166546 58166615 -61578283 + MER5A DNA MER1_type 96 163 -26 1606 275 53 45 chr13 58166816 58167037 -61577861 - MLT1E2 LTR MaLR 0 626 408 3012 192 8 31 chr13 58167037 58167687 -61577211 + LTR27 LTR ERV1 2 636 0 1606 275 53 45 chr13 58167687 58168086 -61576812 - MLT1E2 LTR MaLR -218 408 1 227 289 106 28 chr13 58168259 58168401 -61576497 - L3 LINE CR1 -576 1001 849 2369 71 3 10 chr13 58169794 58170104 -61574794 - AluY SINE Alu -3 308 1 593 303 90 36 chr13 58170112 58170614 -61574284 - L1MC/D LINE L1 -1990 5818 5290 22 0 0 0 chr13 58170927 58170949 -61573949 + AT_rich Low_complexity Low_complexity 1 22 0 348 307 123 43 chr13 58171133 58171410 -61573488 - L1MC/D LINE L1 -1446 4700 4402 678 238 26 0 chr13 58171419 58171570 -61573328 - MLT1A2 LTR MaLR -2 372 218 512 301 97 77 chr13 58171854 58172769 -61572129 - L1MC/D LINE L1 -2313 3833 2900 2258 79 0 47 chr13 58172982 58173300 -61571598 - AluY SINE Alu -4 307 5 302 268 140 6 chr13 58173963 58174120 -61570778 + MER69 DNA AcHobo 2342 2519 -7 33 56 0 0 chr13 58174302 58174356 -61570542 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr13 58174617 58174638 -61570260 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 58174775 58174797 -61570101 + AT_rich Low_complexity Low_complexity 1 22 0 1348 187 19 66 chr13 58175568 58175955 -61568943 + MER67C LTR ERV1 20 404 -245 523 201 11 98 chr13 58175965 58176139 -61568759 + MER67D LTR ERV1 356 514 0 232 362 181 5 chr13 58176153 58176352 -61568546 - L2 LINE L2 -192 3121 2888 224 221 12 0 chr13 58176376 58176434 -61568464 - MIR3 SINE MIR -52 156 97 677 281 60 0 chr13 58176851 58177036 -61567862 + MIR SINE MIR 56 251 -11 573 209 70 67 chr13 58177206 58177522 -61567376 - L1MC5 LINE L1 -168 7793 7477 1833 101 4 30 chr13 58178313 58178580 -61566318 - AluSg SINE Alu -14 296 37 180 77 0 0 chr13 58179992 58180018 -61564880 + (GA)n Simple_repeat Simple_repeat 1 26 0 2267 110 3 0 chr13 58181539 58181840 -61563058 + AluY SINE Alu 1 302 -9 233 176 0 0 chr13 58181851 58181885 -61563013 + AluSx SINE Alu 1 34 -268 4121 137 72 47 chr13 58181885 58182787 -61562111 - pTR5 LTR ERV1 0 2606 1524 1290 183 52 57 chr13 58182784 58183360 -61561538 - pTR5 LTR ERV1 -1085 1353 741 * 4198 136 100 138 chr13 58183356 58184543 -61560355 - pTR5 LTR ERV1 -231 2029 5 1681 149 0 33 chr13 58184543 58184818 -61560080 + AluSx SINE Alu 31 296 -16 612 210 19 0 chr13 58185240 58185397 -61559501 - L1 LINE L1 -3644 3462 3303 338 60 0 20 chr13 58185510 58185560 -61559338 + (TTCCC)n Simple_repeat Simple_repeat 2 50 0 666 218 0 0 chr13 58185561 58185694 -61559204 - FLAM_C SINE Alu 0 133 1 752 232 152 24 chr13 58185699 58185910 -61558988 - L1 LINE L1 -6792 238 1 24 0 0 0 chr13 58186194 58186218 -61558680 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr13 58187248 58187285 -61557613 + AT_rich Low_complexity Low_complexity 1 37 0 1006 228 103 16 chr13 58187294 58187606 -61557292 + L1MD3 LINE L1 6772 7110 -885 240 258 0 62 chr13 58187610 58187707 -61557191 + MLT1F1 LTR MaLR 35 125 -442 1649 205 50 8 chr13 58187707 58188087 -61556811 + L1MD3 LINE L1 7410 7805 -190 * 4190 128 30 8 chr13 58188077 58188832 -61556066 - L1PB1 LINE L1 -4011 2852 2043 * 10144 195 17 1 chr13 58188829 58190904 -61553994 + L1PB1 LINE L1 2849 4957 -1905 9823 17 0 0 chr13 58190899 58192439 -61552459 - L1P1 LINE L1 -386 5769 4230 * 3431 3 0 0 chr13 58192436 58192821 -61552077 + L1HS LINE L1 5771 6155 0 * 5944 159 5 16 chr13 58192822 58193501 -61551397 + L1PB1 LINE L1 4949 5634 -1233 2236 92 0 20 chr13 58193501 58193796 -61551102 - AluY SINE Alu -22 289 1 5944 159 5 16 chr13 58193796 58195063 -61549835 + L1PB1 LINE L1 5634 6866 -1 1690 184 31 0 chr13 58195085 58195379 -61549519 + AluSx SINE Alu 1 303 -9 557 243 14 65 chr13 58195382 58195434 -61549464 + L1MD3 LINE L1 7791 7844 -151 12579 142 70 9 chr13 58195434 58197712 -61547186 + Tigger1 DNA MER2_type 1 2418 0 557 243 14 65 chr13 58197712 58197873 -61547025 + L1MD3 LINE L1 7844 7993 -2 7598 32 0 0 chr13 58199220 58200381 -61544517 - L1PA3 LINE L1 0 6155 4995 7506 26 1 10 chr13 58203062 58204125 -61540773 + L1PA4 LINE L1 5101 6155 0 6461 109 47 27 chr13 58204140 58204536 -61540362 + LOR1-int LTR ERV1 4370 4757 -3363 209 33 33 0 chr13 58204536 58204566 -61540332 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1720 150 4 0 chr13 58204569 58204822 -61540076 - AluSx SINE Alu -31 281 28 6461 109 47 27 chr13 58204822 58205554 -61539344 + LOR1-int LTR ERV1 4758 5524 -2596 1763 107 44 4 chr13 58205534 58205806 -61539092 + LOR1-int LTR ERV1 5782 6064 -2056 * 433 139 42 0 chr13 58205805 58205877 -61539021 + LOR1-int LTR ERV1 8030 8104 -16 * 1889 152 7 0 chr13 58205897 58206187 -61538711 - AluSx SINE Alu -20 292 1 631 99 0 11 chr13 58206227 58206318 -61538580 - HY4 scRNA scRNA -3 90 1 3992 114 57 22 chr13 58206318 58206999 -61537899 + Tigger3b DNA MER2_type 282 986 -245 21 95 0 0 chr13 58207924 58207987 -61536911 + AT_rich Low_complexity Low_complexity 1 63 0 289 316 12 0 chr13 58208052 58208220 -61536678 - L1M4 LINE L1 -1008 5138 4969 1616 237 94 36 chr13 58208233 58208917 -61535981 - L1M4 LINE L1 -1251 4895 4173 1921 227 13 11 chr13 58208934 58209392 -61535506 + L1MC3 LINE L1 7160 7618 -167 189 195 0 0 chr13 58209443 58209484 -61535414 + (TA)n Simple_repeat Simple_repeat 1 41 0 4343 237 34 21 chr13 58209616 58211203 -61533695 + L1MD2 LINE L1 4742 6349 -10 366 157 60 0 chr13 58211305 58211388 -61533510 - L1MA8 LINE L1 -91 6200 6113 22 35 0 0 chr13 58211388 58211417 -61533481 + AT_rich Low_complexity Low_complexity 1 29 0 192 321 85 45 chr13 58211910 58212134 -61532764 + L3 LINE CR1 155 387 -1190 225 384 44 30 chr13 58212138 58212341 -61532557 + L3 LINE CR1 1051 1256 -321 21 0 0 0 chr13 58212442 58212463 -61532435 + AT_rich Low_complexity Low_complexity 1 21 0 1206 218 17 4 chr13 58212588 58212827 -61532071 - MSTD LTR MaLR 0 396 155 1770 169 38 11 chr13 58213056 58213423 -61531475 - L1MA8 LINE L1 -2 6289 5913 353 325 30 57 chr13 58215899 58216234 -61528664 + L1MC/D LINE L1 5268 5593 -2215 2326 125 19 14 chr13 58216394 58216754 -61528144 + THE1B LTR MaLR 3 364 0 237 322 23 0 chr13 58217031 58217118 -61527780 + L2 LINE L2 3184 3272 0 567 222 105 0 chr13 58217782 58217944 -61526954 + MIR SINE MIR 73 251 -11 3591 161 9 3 chr13 58219040 58219685 -61525213 + L1MA4 LINE L1 5638 6286 -14 831 211 123 55 chr13 58219996 58220430 -61524468 + MLT1D LTR MaLR 1 487 -18 28 0 0 0 chr13 58221205 58221233 -61523665 + AT_rich Low_complexity Low_complexity 1 28 0 533 274 178 0 chr13 58221370 58221567 -61523331 + MIR SINE MIR 23 254 -8 30 0 0 0 chr13 58221725 58221755 -61523143 + AT_rich Low_complexity Low_complexity 1 30 0 2281 106 0 0 chr13 58222288 58222590 -61522308 + AluSx SINE Alu 2 303 -9 227 245 14 18 chr13 58223402 58223623 -61521275 + (TA)n Simple_repeat Simple_repeat 1 220 0 23 0 0 0 chr13 58223774 58223797 -61521101 + AT_rich Low_complexity Low_complexity 1 23 0 1207 190 29 37 chr13 58224178 58224420 -61520478 + MLT1A1 LTR MaLR 84 323 -42 369 221 39 0 chr13 58224419 58224496 -61520402 + MLT1A1 LTR MaLR 284 363 -2 * 367 280 126 6 chr13 58224783 58224958 -61519940 - MIR SINE MIR -16 246 51 24 32 0 0 chr13 58227214 58227245 -61517653 + AT_rich Low_complexity Low_complexity 1 31 0 348 325 167 30 chr13 58227288 58227623 -61517275 - L2 LINE L2 -105 3208 2828 237 83 0 0 chr13 58228201 58228237 -61516661 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 186 0 0 chr13 58228456 58228499 -61516399 + (TG)n Simple_repeat Simple_repeat 2 44 0 277 327 25 94 chr13 58229549 58229824 -61515074 - L2 LINE L2 -12 3301 3046 1998 121 3 32 chr13 58230995 58231309 -61513589 - AluSp SINE Alu -8 305 1 394 317 0 0 chr13 58232123 58232224 -61512674 + L2 LINE L2 3164 3264 -8 381 71 0 0 chr13 58232354 58232410 -61512488 - L1MA1 LINE L1 0 6302 6247 511 235 0 53 chr13 58232566 58232698 -61512200 - MER70B LTR ERVL 0 578 454 237 65 0 0 chr13 58233335 58233366 -61511532 + (GAA)n Simple_repeat Simple_repeat 2 32 0 230 279 199 35 chr13 58233956 58234243 -61510655 + L2 LINE L2 2284 2617 -697 185 208 75 0 chr13 58234315 58234368 -61510530 - L2 LINE L2 -54 3259 3203 468 307 84 0 chr13 58234667 58234833 -61510065 + MIR SINE MIR 43 222 -40 267 317 127 21 chr13 58235021 58235163 -61509735 + MIR SINE MIR 19 175 -87 203 199 38 107 chr13 58235244 58235375 -61509523 + L2 LINE L2 3111 3232 -81 6083 263 34 23 chr13 58235668 58238045 -61506853 - L1MCb LINE L1 -1914 4650 2278 1418 264 14 0 chr13 58238046 58238338 -61506560 + HERV3 LTR ERV1 8012 8307 -119 1253 203 33 25 chr13 58238338 58238614 -61506284 + MLT1A2 LTR MaLR 97 374 0 2715 282 47 38 chr13 58238629 58240010 -61504888 - L1MCb LINE L1 -4634 1930 564 1581 169 191 8 chr13 58240010 58240372 -61504526 - MSTA LTR MaLR 0 428 1 9133 152 7 34 chr13 58240372 58241994 -61502904 - MSTA-int LTR MaLR 0 1580 3 1444 175 194 6 chr13 58241996 58242356 -61502542 - MSTA LTR MaLR 0 428 1 2715 282 47 38 chr13 58242356 58242875 -61502023 - L1MCb LINE L1 -6000 564 1 738 199 0 0 chr13 58244217 58244348 -61500550 - FLAM_A SINE Alu -2 131 1 238 331 79 14 chr13 58244348 58244487 -61500411 + L2 LINE L2 1873 2020 -1294 964 120 35 0 chr13 58244527 58244669 -61500229 - AluJb SINE Alu -9 303 157 335 373 86 25 chr13 58244964 58245326 -61499572 + L2 LINE L2 2521 2904 -410 198 59 20 78 chr13 58246310 58246361 -61498537 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr13 58246367 58246391 -61498507 + AT_rich Low_complexity Low_complexity 1 24 0 189 171 0 0 chr13 58246406 58246441 -61498457 + (TA)n Simple_repeat Simple_repeat 1 35 0 331 240 34 0 chr13 58246482 58246628 -61498270 + (TA)n Simple_repeat Simple_repeat 1 151 0 248 197 14 28 chr13 58247663 58247734 -61497164 + Charlie7 DNA MER1_type 40 109 -2503 589 297 38 55 chr13 58247961 58248197 -61496701 + MIR SINE MIR 6 237 -25 510 129 0 0 chr13 58248746 58248831 -61496067 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 396 340 126 29 chr13 58248910 58249400 -61495498 + L2 LINE L2 2603 3144 -169 184 135 19 19 chr13 58249585 58249637 -61495261 + (CA)n Simple_repeat Simple_repeat 2 53 0 32 26 0 0 chr13 58249683 58249722 -61495176 + AT_rich Low_complexity Low_complexity 1 39 0 540 81 0 0 chr13 58252511 58252585 -61492313 + (TG)n Simple_repeat Simple_repeat 2 75 0 1683 97 0 0 chr13 58253002 58253219 -61491679 + AluSc SINE Alu 1 217 -92 1223 218 50 88 chr13 58253510 58253910 -61490988 + MLT1B LTR MaLR 1 385 -5 446 33 17 0 chr13 58253910 58253970 -61490928 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 196 323 46 39 chr13 58254464 58254594 -61490304 - MIR SINE MIR -57 205 75 492 322 82 53 chr13 58254781 58255197 -61489701 + MLT1K LTR MaLR 157 584 -4 13931 139 32 22 chr13 58255260 58256439 -61488459 + Tigger1 DNA MER2_type 24 1191 -1227 2273 108 0 0 chr13 58256439 58256734 -61488164 - AluSg SINE Alu -15 295 1 13931 139 32 22 chr13 58256734 58257927 -61486971 + Tigger1 DNA MER2_type 1191 2418 0 305 353 26 9 chr13 58259739 58259855 -61485043 - MIR SINE MIR -113 149 32 907 217 0 0 chr13 58259892 58260058 -61484840 + MER58A DNA MER1_type 43 208 -16 828 224 112 0 chr13 58361993 58362189 -61382709 + MLT1E1 LTR MaLR 433 650 -4 22 80 0 0 chr13 58363038 58363088 -61381810 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr13 58363637 58363659 -61381239 + AT_rich Low_complexity Low_complexity 1 22 0 1787 167 10 3 chr13 58364018 58364324 -61380574 - AluJb SINE Alu -4 308 1 28 61 0 0 chr13 58365721 58365770 -61379128 + AT_rich Low_complexity Low_complexity 1 49 0 1716 174 3 23 chr13 58365770 58366074 -61378824 - AluJb SINE Alu -14 298 1 627 297 116 14 chr13 58366157 58366433 -61378465 + MLT1I LTR MaLR 106 409 0 293 0 27 0 chr13 58368723 58368760 -61376138 + (TA)n Simple_repeat Simple_repeat 1 38 0 28 29 0 0 chr13 58368904 58368939 -61375959 + AT_rich Low_complexity Low_complexity 1 35 0 8211 215 65 34 chr13 58369650 58371465 -61373433 + L1MC4a LINE L1 115 2011 -4529 1979 126 0 14 chr13 58371465 58371758 -61373140 - AluSx SINE Alu -19 293 5 8211 215 65 34 chr13 58371758 58372147 -61372751 + L1MC4a LINE L1 2011 2387 -4153 410 266 84 56 chr13 58372180 58372323 -61372575 - MLT1C LTR MaLR -91 376 230 2136 267 39 17 chr13 58372325 58373040 -61371858 + L1MC4a LINE L1 3765 4495 -2045 1292 189 4 48 chr13 58373041 58373311 -61371587 - AluJo SINE Alu -54 258 1 788 266 82 36 chr13 58373361 58373792 -61371106 + L1MC4a LINE L1 4574 4984 -1556 333 0 0 0 chr13 58373792 58373829 -61371069 + (TG)n Simple_repeat Simple_repeat 2 38 0 788 266 82 36 chr13 58373829 58374136 -61370762 + L1MC4a LINE L1 4984 5454 -1086 998 294 125 22 chr13 58374504 58374613 -61370285 - HERV16 LTR ERVL -2550 2446 2350 2511 109 67 5 chr13 58374613 58375016 -61369882 + MSTA LTR MaLR 1 428 0 998 294 125 22 chr13 58375016 58375499 -61369399 - HERV16 LTR ERVL -2646 2350 1974 831 269 45 11 chr13 58375500 58375875 -61369023 - L1MEc LINE L1 -3113 3102 2715 1939 214 21 3 chr13 58375926 58376300 -61368598 - MLT1B LTR MaLR -7 383 3 733 256 18 0 chr13 58376380 58376544 -61368354 + L1MC4a LINE L1 5909 6075 -2127 255 211 11 84 chr13 58376578 58376673 -61368225 + L1MC4a LINE L1 6065 6152 -2050 351 268 53 91 chr13 58376706 58376971 -61367927 + L1MC4a LINE L1 6404 6658 -1544 394 136 0 0 chr13 58377071 58377137 -61367761 - L1PA16 LINE L1 -4 6162 6097 4821 126 8 18 chr13 58377142 58377848 -61367050 - L1PA15 LINE L1 -134 6031 5332 2539 147 16 19 chr13 58377848 58378277 -61366621 - MSTA LTR MaLR 0 428 1 4821 126 8 18 chr13 58378277 58378347 -61366551 - L1PA15 LINE L1 -833 5332 5263 1255 227 73 70 chr13 58378344 58378876 -61366022 - L1MC4a LINE L1 -1715 6093 5560 * 2202 75 21 0 chr13 58379008 58379311 -61365587 - AluSp SINE Alu 0 309 1 302 319 21 21 chr13 58379684 58379828 -61365070 - L1MEc LINE L1 -3526 2689 2546 292 246 16 56 chr13 58380281 58380407 -61364491 - HAL1 LINE L1 -863 1644 1524 197 314 14 0 chr13 58380414 58380484 -61364414 - L2 LINE L2 -2 3311 3241 235 262 115 0 chr13 58380484 58380545 -61364353 - L2 LINE L2 -33 3280 3213 1093 299 132 25 chr13 58380626 58381245 -61363653 - L2 LINE L2 -235 3037 2365 183 274 137 16 chr13 58381277 58381401 -61363497 + L2 LINE L2 3056 3194 -119 407 296 105 38 chr13 58381505 58381819 -61363079 - L1MEc LINE L1 -5016 1380 1046 1947 77 9 77 chr13 58381860 58381894 -61363004 - AluY SINE Alu -7 304 269 369 43 0 0 chr13 58381894 58381941 -61362957 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1947 77 9 77 chr13 58381941 58382232 -61362666 - AluY SINE Alu -42 269 1 258 277 30 40 chr13 58382334 58382435 -61362463 - L1MEc LINE L1 -5432 773 674 2213 111 0 3 chr13 58382480 58382786 -61362112 - AluSq SINE Alu -8 305 1 340 363 73 16 chr13 58383172 58383420 -61361478 + L1 LINE L1 4740 5001 -1145 403 235 224 6 chr13 58383571 58383741 -61361157 - L1MC4a LINE L1 -5 7803 7597 * 1291 192 151 13 chr13 58383734 58384125 -61360773 - L1MC4 LINE L1 -451 7591 7147 25 65 0 0 chr13 58384599 58384645 -61360253 + AT_rich Low_complexity Low_complexity 1 46 0 366 257 124 0 chr13 58384816 58384929 -61359969 - MIR SINE MIR -109 153 27 241 312 64 52 chr13 58386709 58386882 -61358016 + MIR SINE MIR 74 248 -14 1447 201 3 24 chr13 58386887 58387181 -61357717 - AluJo SINE Alu -24 288 1 352 226 32 90 chr13 58387381 58387536 -61357362 + LTR52 LTR ERVL 1 146 -275 900 158 50 0 chr13 58387555 58387694 -61357204 - FRAM SINE Alu -30 146 1 1335 249 52 9 chr13 58387896 58388177 -61356721 + MER20B DNA MER1_type 231 540 -243 2417 43 0 0 chr13 58388177 58388490 -61356408 - AluY SINE Alu 0 313 1 1335 249 52 9 chr13 58388490 58388652 -61356246 + MER20B DNA MER1_type 540 694 -89 267 31 0 0 chr13 58388653 58388685 -61356213 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1844 58 0 73 chr13 58388687 58388947 -61355951 - AluY SINE Alu -32 279 39 21 36 0 0 chr13 58389752 58389780 -61355118 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 58390333 58390365 -61354533 + AT_rich Low_complexity Low_complexity 1 32 0 348 332 96 18 chr13 58390383 58390612 -61354286 - MIR SINE MIR 0 262 16 22 56 0 0 chr13 58390636 58390672 -61354226 + AT_rich Low_complexity Low_complexity 1 36 0 2267 85 0 3 chr13 58391803 58392109 -61352789 - AluSc SINE Alu -4 305 1 215 211 21 74 chr13 58392436 58392531 -61352367 + MIR SINE MIR 117 206 -56 315 344 129 12 chr13 58394771 58394934 -61349964 + L2 LINE L2 3090 3271 -1 2027 116 17 7 chr13 58395131 58395424 -61349474 - AluSx SINE Alu -16 296 1 26 0 0 0 chr13 58396212 58396238 -61348660 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr13 58396307 58396344 -61348554 + AT_rich Low_complexity Low_complexity 1 37 0 216 97 0 0 chr13 58396828 58396859 -61348039 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 317 169 26 0 chr13 58396861 58396938 -61347960 + (TATG)n Simple_repeat Simple_repeat 4 82 0 29 47 0 0 chr13 58397080 58397123 -61347775 + AT_rich Low_complexity Low_complexity 1 43 0 244 316 60 51 chr13 58397295 58397412 -61347486 + MIR SINE MIR 32 149 -59 433 304 17 33 chr13 58398332 58398513 -61346385 + MER5B DNA MER1_type 1 178 0 267 103 0 0 chr13 58398628 58398667 -61346231 + (TG)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr13 58399572 58399596 -61345302 + AT_rich Low_complexity Low_complexity 1 24 0 231 289 165 21 chr13 58399600 58399794 -61345104 + LTR50 LTR ERVL 18 239 -556 484 235 36 118 chr13 58399854 58400186 -61344712 + LTR33A LTR ERVL 219 523 0 427 257 0 9 chr13 58400455 58400560 -61344338 - MER45A DNA AcHobo 0 178 75 1625 170 41 4 chr13 58400913 58401203 -61343695 + AluJb SINE Alu 3 302 0 3596 180 113 81 chr13 58402401 58403389 -61341509 - LTR28 LTR ERV1 0 1020 1 594 287 82 20 chr13 58403391 58403684 -61341214 - L1ME3A LINE L1 -18 6152 5842 2719 84 0 3 chr13 58404600 58404956 -61339942 + THE1A LTR MaLR 1 355 0 23 78 0 0 chr13 58405676 58405727 -61339171 + AT_rich Low_complexity Low_complexity 1 51 0 240 343 40 30 chr13 58405895 58405994 -61338904 - L2 LINE L2 -4 3268 3169 4399 121 38 13 chr13 58407859 58408562 -61336336 - HSMAR2 DNA Mariner -1 1301 581 2226 92 13 19 chr13 58408562 58408877 -61336021 + AluSq SINE Alu 1 313 0 931 110 11 22 chr13 58408877 58408893 -61336005 + (GGAA)n Simple_repeat Simple_repeat 1 195 0 931 110 11 22 chr13 58408893 58409075 -61335823 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3591 129 12 12 chr13 58409100 58409690 -61335208 - HSMAR2 DNA Mariner -707 595 6 333 232 88 32 chr13 58409716 58409841 -61335057 + L1ME4a LINE L1 5707 5838 -283 195 183 16 32 chr13 58409852 58409978 -61334920 + (TA)n Simple_repeat Simple_repeat 2 125 0 23 92 0 0 chr13 58409992 58410057 -61334841 + AT_rich Low_complexity Low_complexity 1 65 0 1893 134 41 3 chr13 58412047 58412339 -61332559 + AluSg SINE Alu 1 303 -7 253 222 74 0 chr13 58413491 58413545 -61331353 - L2 LINE L2 -19 3253 3196 30 27 0 0 chr13 58414680 58414717 -61330181 + AT_rich Low_complexity Low_complexity 1 37 0 239 71 24 0 chr13 58417715 58417757 -61327141 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr13 58418040 58418075 -61326823 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 58418367 58418395 -61326503 + AT_rich Low_complexity Low_complexity 1 28 0 42 0 0 0 chr13 58418676 58418718 -61326180 + AT_rich Low_complexity Low_complexity 1 42 0 208 147 0 0 chr13 58418751 58418785 -61326113 + (T)n Simple_repeat Simple_repeat 1 34 0 42709 33 21 1 chr13 58418785 58424813 -61320085 - L1PA2 LINE L1 0 6155 7 419 336 103 17 chr13 58425014 58425246 -61319652 - MIR SINE MIR -9 253 2 33 0 0 0 chr13 58425269 58425302 -61319596 + AT_rich Low_complexity Low_complexity 1 33 0 467 159 38 6 chr13 58425337 58425494 -61319404 + (TA)n Simple_repeat Simple_repeat 1 162 0 1979 143 61 47 chr13 58425501 58425927 -61318971 - L1MA8 LINE L1 -4 6287 5856 1984 208 74 11 chr13 58426280 58426755 -61318143 - LTR22 LTR ERVK -4 505 1 2004 135 0 0 chr13 58428158 58428446 -61316452 - AluY SINE Alu -23 288 1 2994 125 16 57 chr13 58428623 58429119 -61315779 + LTR43 LTR ERV1 1 476 -126 3973 129 58 48 chr13 58429122 58429899 -61314999 - LTR1 LTR ERV1 0 785 1 927 86 0 0 chr13 58429941 58430069 -61314829 + LTR43 LTR ERV1 475 602 0 372 303 99 13 chr13 58431030 58431182 -61313716 - MIR SINE MIR -93 169 5 208 315 99 45 chr13 58431197 58431308 -61313590 - L2 LINE L2 -7 3306 3190 333 292 55 81 chr13 58431807 58432204 -61312694 + L1MC4a LINE L1 5523 5909 -1899 35 71 0 0 chr13 58432829 58432899 -61311999 + AT_rich Low_complexity Low_complexity 1 70 0 283 207 77 0 chr13 58433941 58434013 -61310885 + AluS SINE Alu 1 69 -234 1088 131 61 28 chr13 58434013 58434227 -61310671 + LTR12 LTR ERV1 39 259 -455 327 297 0 0 chr13 58434272 58434373 -61310525 + LTR30 LTR ERV1 524 624 -98 657 202 25 0 chr13 58434373 58434492 -61310406 + LTR12 LTR ERV1 359 480 -234 1636 132 0 20 chr13 58434493 58434743 -61310155 + AluSc SINE Alu 31 275 -34 4063 124 129 103 chr13 58435746 58437209 -61307689 + pTR5 LTR ERV1 741 2438 0 23 54 0 0 chr13 58437432 58437469 -61307429 + AT_rich Low_complexity Low_complexity 1 37 0 2953 127 50 0 chr13 58443100 58443582 -61301316 - L1MA8 LINE L1 -532 5759 5254 591 166 39 46 chr13 58443583 58444004 -61300894 + L1MA8 LINE L1 5749 6172 -119 5818 154 38 48 chr13 58444004 58445253 -61299645 - MER11B LTR ERVK 0 1236 1 591 166 39 46 chr13 58445253 58445330 -61299568 + L1MA8 LINE L1 6172 6245 -46 1900 141 171 8 chr13 58445330 58445698 -61299200 + MSTA LTR MaLR 1 428 0 591 166 39 46 chr13 58445698 58445745 -61299153 + L1MA8 LINE L1 6245 6291 0 1847 170 21 24 chr13 58445923 58446299 -61298599 - THE1C LTR MaLR 0 375 1 494 325 179 11 chr13 58446566 58446945 -61297953 + L3 LINE CR1 270 712 -865 227 254 0 18 chr13 58446944 58446999 -61297899 - L2 LINE L2 -5 3308 3255 * 330 391 31 0 chr13 58447137 58447265 -61297633 + MIR SINE MIR 13 144 -118 231 372 25 25 chr13 58447464 58447585 -61297313 + L3 LINE CR1 1064 1184 -393 1535 347 156 21 chr13 58447811 58449501 -61295397 + L2 LINE L2 856 2773 -541 2522 59 0 7 chr13 58449547 58449854 -61295044 - AluY SINE Alu -6 305 1 291 324 62 59 chr13 58449950 58450240 -61294658 + L2 LINE L2 3023 3313 0 379 287 16 41 chr13 58450404 58450526 -61294372 - MLT1I LTR MaLR -194 215 97 22 0 0 0 chr13 58450603 58450625 -61294273 + AT_rich Low_complexity Low_complexity 1 22 0 357 255 128 14 chr13 58450649 58450790 -61294108 + MER117 DNA MER1_type 41 197 0 263 373 93 24 chr13 58450814 58451061 -61293837 + L3 LINE CR1 1254 1517 -60 1975 96 81 0 chr13 58451752 58452023 -61292875 - AluSx SINE Alu -17 295 3 185 100 50 0 chr13 58452488 58452528 -61292370 + A-rich Low_complexity Low_complexity 6 47 0 487 321 183 43 chr13 58453632 58453699 -61291199 - L2 LINE L2 -365 2949 2893 213 39 0 0 chr13 58453699 58453725 -61291173 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 487 321 183 43 chr13 58453725 58454279 -61290619 - L2 LINE L2 -421 2893 2241 4222 113 2 0 chr13 58454702 58455312 -61289586 + L1PA15 LINE L1 5554 6164 -1 233 324 9 48 chr13 58456423 58456528 -61288370 + L2 LINE L2 2972 3072 -200 313 320 40 7 chr13 58456592 58456742 -61288156 - L2 LINE L2 -674 2640 2486 239 362 94 24 chr13 58456802 58456929 -61287969 + L2 LINE L2 3137 3272 0 25 65 0 0 chr13 58457045 58457091 -61287807 + AT_rich Low_complexity Low_complexity 1 46 0 494 67 67 0 chr13 58457131 58457206 -61287692 + MADE1 DNA Mariner 1 80 0 275 314 38 0 chr13 58457713 58457823 -61287075 + MIR SINE MIR 56 168 -58 1052 264 129 55 chr13 58457878 58458588 -61286310 + MER52A LTR ERV1 3 1474 -147 532 294 6 6 chr13 58458580 58458743 -61286155 + MER52A LTR ERV1 1593 1755 0 * 382 153 42 14 chr13 58459305 58459377 -61285521 + MER84 LTR ERVI 1 74 -433 3392 111 16 14 chr13 58459377 58459882 -61285016 + MER84 LTR ERV1 2 507 0 26 50 0 0 chr13 58461332 58461372 -61283526 + AT_rich Low_complexity Low_complexity 1 40 0 366 295 54 0 chr13 58461386 58461515 -61283383 - MIR SINE MIR -8 254 119 367 342 15 40 chr13 58463009 58463208 -61281690 + L2 LINE L2 88 281 -3033 2007 200 21 0 chr13 58463211 58463586 -61281312 - MLT1B LTR MaLR 0 390 8 216 0 0 0 chr13 58463635 58463659 -61281239 + (T)n Simple_repeat Simple_repeat 1 24 0 207 301 32 32 chr13 58463802 58463895 -61281003 + L2 LINE L2 792 884 -2430 753 352 29 9 chr13 58463988 58464335 -61280563 + L2 LINE L2 1077 1430 -1884 1823 178 85 52 chr13 58464337 58464820 -61280078 + MLT1D LTR MaLR 3 501 -4 333 250 74 14 chr13 58464994 58465210 -61279688 + MER20B DNA MER1_type 548 776 -7 2428 154 48 89 chr13 58465324 58465922 -61278976 + MER4B LTR ERV1 1 574 -36 266 241 11 0 chr13 58466495 58466582 -61278316 + CT-rich Low_complexity Low_complexity 1 88 0 207 0 0 0 chr13 58466630 58466653 -61278245 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 413 314 217 25 chr13 58466733 58467364 -61277534 - L2 LINE L2 0 3313 2554 1225 170 17 42 chr13 58468238 58468479 -61276419 + AluJb SINE Alu 1 235 -77 774 167 132 78 chr13 58469546 58469750 -61275148 + MER20 DNA MER1_type 1 215 -4 500 326 129 29 chr13 58470634 58471155 -61273743 - L2 LINE L2 -917 2397 1825 261 0 0 0 chr13 58471382 58471411 -61273487 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 520 140 11 0 chr13 58471419 58471512 -61273386 + MER53 DNA DNA 29 122 -67 275 157 0 0 chr13 58471575 58471626 -61273272 + MER53 DNA DNA 139 189 0 319 355 59 5 chr13 58471757 58471960 -61272938 - L2 LINE L2 -1904 1410 1197 234 360 102 21 chr13 58472018 58472343 -61272555 - L2 LINE L2 -2258 1056 706 697 278 80 55 chr13 58472385 58472824 -61272074 - MLT1J2 LTR MaLR 0 450 1 25 0 0 0 chr13 58474459 58474484 -61270414 + AT_rich Low_complexity Low_complexity 1 25 0 333 153 0 0 chr13 58474824 58474896 -61270002 + GA-rich Low_complexity Low_complexity 2 73 0 1903 136 24 3 chr13 58474952 58475247 -61269651 + AluSq SINE Alu 2 302 -11 212 371 8 53 chr13 58475609 58475741 -61269157 + MIR SINE MIR 20 145 -63 246 285 39 18 chr13 58475994 58476124 -61268774 + MIR SINE MIR 33 163 -66 4006 205 99 4 chr13 58476264 58477728 -61267170 - L1MB2 LINE L1 -47 6124 4500 594 270 57 0 chr13 58479137 58479296 -61265602 + MIR SINE MIR 81 248 -14 1179 291 316 12 chr13 58479351 58480186 -61264712 + L2 LINE L2 1787 2875 -439 378 318 107 39 chr13 58480217 58480497 -61264401 + L2 LINE L2 2968 3266 -47 927 253 58 14 chr13 58480828 58481105 -61263793 - L1MDa LINE L1 -6218 322 34 1743 82 116 8 chr13 58481262 58481529 -61263369 + AluSc SINE Alu 1 296 -13 22 80 0 0 chr13 58482386 58482436 -61262462 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr13 58482722 58482752 -61262146 + AT_rich Low_complexity Low_complexity 1 30 0 273 213 30 110 chr13 58482806 58482970 -61261928 - MER112 DNA MER1_type -37 223 73 25 31 0 0 chr13 58486488 58486520 -61258378 + AT_rich Low_complexity Low_complexity 1 32 0 276 245 104 47 chr13 58486876 58487068 -61257830 + L2 LINE L2 3111 3313 0 9652 193 65 42 chr13 58487214 58489405 -61255493 + L1M2 LINE L1 1 2240 -4609 2249 181 20 23 chr13 58489403 58489890 -61255008 + L1M2 LINE L1 3889 4374 -2474 * 608 203 0 0 chr13 58489892 58490010 -61254888 + L1M2 LINE L1 5215 5332 -1516 * 1112 180 35 0 chr13 58490009 58490237 -61254661 + L1M2 LINE L1 5870 6105 -743 1271 140 0 0 chr13 58490238 58490445 -61254453 - L1M1 LINE L1 -690 5613 5407 2122 167 35 30 chr13 58491150 58491698 -61253200 - MLT2A2 LTR ERVL 0 554 1 280 352 78 8 chr13 58491804 58491932 -61252966 - L2 LINE L2 -36 3236 3100 187 275 0 0 chr13 58492122 58492162 -61252736 - L2 LINE L2 -479 2835 2796 2170 102 0 0 chr13 58493272 58493557 -61251341 + AluSg SINE Alu 23 307 -3 325 334 152 48 chr13 58493825 58494291 -61250607 + L2 LINE L2 2553 3072 -241 229 281 0 18 chr13 58494614 58494671 -61250227 + L2 LINE L2 3168 3223 -49 24 0 0 0 chr13 58496359 58496383 -61248515 + AT_rich Low_complexity Low_complexity 1 24 0 439 296 91 51 chr13 58496847 58497242 -61247656 - L1ME LINE L1 -495 5667 5257 262 227 93 0 chr13 58497437 58497512 -61247386 - L1 LINE L1 -1156 4990 4909 247 259 40 88 chr13 58497555 58497829 -61247069 - L1 LINE L1 -1334 4812 4552 327 291 150 9 chr13 58497873 58498086 -61246812 - L1 LINE L1 -2615 3531 3289 198 0 0 0 chr13 58498117 58498139 -61246759 + (TC)n Simple_repeat Simple_repeat 1 22 0 509 43 105 12 chr13 58498262 58498424 -61246474 + (TA)n Simple_repeat Simple_repeat 1 177 0 331 67 103 18 chr13 58498445 58498610 -61246288 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 766 102 45 44 chr13 58498577 58499093 -61245805 + (TATAA)n Simple_repeat Simple_repeat 1 516 0 413 159 65 0 chr13 58499096 58499234 -61245664 + (TA)n Simple_repeat Simple_repeat 2 148 0 289 264 67 63 chr13 58499401 58499685 -61245213 - L1 LINE L1 -3137 3009 2725 234 289 67 29 chr13 58499851 58500059 -61244839 - L1 LINE L1 -3549 2597 2382 678 243 276 15 chr13 58500069 58500499 -61244399 + MLT1G LTR MaLR 1 522 -68 256 255 69 29 chr13 58500909 58501011 -61243887 - MLT1J LTR MaLR -369 142 37 212 0 36 0 chr13 58501633 58501661 -61243237 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1202 187 88 3 chr13 58502470 58502764 -61242134 - L1MC3 LINE L1 -8 7777 7459 202 358 211 18 chr13 58503993 58504278 -61240620 - L2 LINE L2 -124 3189 2850 23 0 0 0 chr13 58505211 58505234 -61239664 + AT_rich Low_complexity Low_complexity 1 23 0 1770 114 59 0 chr13 58505234 58505505 -61239393 - AluSx SINE Alu -25 287 1 22 0 0 0 chr13 58505639 58505661 -61239237 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 58507356 58507384 -61237514 + AT_rich Low_complexity Low_complexity 1 28 0 737 196 141 94 chr13 58507428 58507795 -61237103 - MSTC LTR MaLR 0 428 1 1111 259 105 21 chr13 58508095 58508437 -61236461 + L1MC4 LINE L1 7531 7924 -118 405 0 0 0 chr13 58508437 58508482 -61236416 + (TG)n Simple_repeat Simple_repeat 2 46 0 1111 259 105 21 chr13 58508482 58508607 -61236291 + L1MC4 LINE L1 7924 8037 -5 336 337 0 0 chr13 58509056 58509157 -61235741 - L3 LINE CR1 -2 1575 1475 31221 29 0 4 chr13 58509301 58513360 -61231538 + L1PA2 LINE L1 1608 5651 -504 227 77 0 26 chr13 58513360 58513399 -61231499 + (TA)n Simple_repeat Simple_repeat 1 38 0 31221 29 0 4 chr13 58513399 58513901 -61230997 + L1PA2 LINE L1 5651 6153 -2 29 0 0 0 chr13 58513901 58513930 -61230968 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 58514430 58514456 -61230442 + AT_rich Low_complexity Low_complexity 1 26 0 203 167 0 0 chr13 58514895 58514931 -61229967 + A-rich Low_complexity Low_complexity 1 36 0 1944 92 3 14 chr13 58514939 58515246 -61229652 + AluSc SINE Alu 3 306 0 180 0 0 0 chr13 58515776 58515796 -61229102 + (A)n Simple_repeat Simple_repeat 1 20 0 480 338 107 28 chr13 58516617 58517049 -61227849 - L1M4 LINE L1 -2258 3888 3423 346 264 24 24 chr13 58517065 58517190 -61227708 - HAL1b LINE L1 -999 349 225 301 314 93 36 chr13 58518465 58518713 -61226185 - L1ME LINE L1 -448 5673 5412 2191 214 33 48 chr13 58518726 58519442 -61225456 - MER21B LTR ERV1 -11 852 98 1264 184 7 149 chr13 58519496 58519613 -61225285 - MLT1A2 LTR MaLR 0 374 242 1867 173 3 10 chr13 58519613 58519926 -61224972 - AluJb SINE Alu 0 312 2 1264 184 7 149 chr13 58519926 58520244 -61224654 - MLT1A2 LTR MaLR -132 242 1 266 217 87 29 chr13 58520244 58520382 -61224516 - L1ME LINE L1 -2408 5400 5255 2004 118 11 3 chr13 58520651 58520938 -61223960 + AluSq SINE Alu 1 289 -24 198 0 0 0 chr13 58520945 58520967 -61223931 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr13 58521160 58521182 -61223716 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr13 58521853 58521887 -61223011 + AT_rich Low_complexity Low_complexity 1 34 0 222 271 0 0 chr13 58523917 58523976 -61220922 + (TG)n Simple_repeat Simple_repeat 2 60 0 248 329 125 52 chr13 58524504 58525024 -61219874 + L2 LINE L2 2260 2817 -497 290 241 43 52 chr13 58525218 58525334 -61219564 + MER115 DNA AcHobo 341 455 -238 793 251 15 20 chr13 58526382 58526585 -61218313 + MIR SINE MIR 46 247 -15 21 36 0 0 chr13 58526654 58526682 -61218216 + AT_rich Low_complexity Low_complexity 1 28 0 275 299 19 9 chr13 58526711 58526818 -61218080 - L1ME LINE L1 -282 5839 5732 1972 138 26 32 chr13 58527668 58528045 -61216853 - THE1C LTR MaLR 0 375 1 22 21 0 62 chr13 58528724 58528772 -61216126 + AT_rich Low_complexity Low_complexity 1 45 0 193 121 0 0 chr13 58529069 58529102 -61215796 - L2 LINE L2 -1 3312 3280 1775 86 18 0 chr13 58529113 58529360 -61215538 - LTR12 LTR ERV1 0 714 51 269 264 0 0 chr13 58529362 58529434 -61215464 - LTR30 LTR ERV1 -98 624 553 813 89 12 0 chr13 58529435 58529604 -61215294 - LTR12 LTR ERV1 -429 285 1 219 278 125 0 chr13 58529604 58529676 -61215222 - L2 LINE L2 -54 3218 3138 639 201 16 46 chr13 58530733 58530927 -61213971 + MER53 DNA DNA 2 189 0 32 67 0 0 chr13 58532271 58532331 -61212567 + AT_rich Low_complexity Low_complexity 1 60 0 25 31 0 0 chr13 58532428 58532460 -61212438 + AT_rich Low_complexity Low_complexity 1 32 0 264 312 55 34 chr13 58532805 58533097 -61211801 + L1M4 LINE L1 4283 4580 -1566 279 0 0 0 chr13 58533301 58533332 -61211566 + (TG)n Simple_repeat Simple_repeat 2 32 0 326 291 34 63 chr13 58533576 58533782 -61211116 + L2 LINE L2 3114 3313 0 239 241 84 0 chr13 58534429 58534512 -61210386 - MER34B LTR ERV1 -64 501 412 1075 183 0 0 chr13 58534515 58534690 -61210208 + AluJb SINE Alu 114 288 -24 8811 103 70 44 chr13 58534711 58536435 -61208463 + L1P3 LINE L1 686 2569 -3892 2452 80 0 0 chr13 58536435 58536746 -61208152 + AluY SINE Alu 1 311 0 8811 103 70 44 chr13 58536746 58537129 -61207769 + L1P3 LINE L1 2569 2940 -3521 349 141 14 0 chr13 58537403 58537462 -61207436 - MER34C LTR ERV1 -465 99 12 1680 253 48 33 chr13 58537473 58537956 -61206942 + MLT1E LTR MaLR 104 593 0 225 203 0 54 chr13 58538084 58538158 -61206740 + L1ME LINE L1 5811 5880 -241 1828 145 8 33 chr13 58538387 58538994 -61205904 + LTR8 LTR ERV1 1 691 0 574 289 52 24 chr13 58539017 58539228 -61205670 + MIR SINE MIR 36 252 -10 22 0 0 0 chr13 58539236 58539258 -61205640 + AT_rich Low_complexity Low_complexity 1 22 0 411 73 0 0 chr13 58539340 58539395 -61205503 + (TG)n Simple_repeat Simple_repeat 2 56 0 252 246 18 0 chr13 58539520 58539577 -61205321 - MIR3 SINE MIR -5 203 146 296 210 12 0 chr13 58539706 58539787 -61205111 + CT-rich Low_complexity Low_complexity 2 83 0 195 146 0 0 chr13 58540260 58540301 -61204597 + (CAA)n Simple_repeat Simple_repeat 2 42 0 257 211 26 0 chr13 58540905 58540981 -61203917 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 1462 76 0 0 chr13 58541249 58541446 -61203452 + L1PA5 LINE L1 5849 6045 -109 226 319 106 18 chr13 58542240 58542353 -61202545 + L2 LINE L2 3186 3308 -5 21 0 0 0 chr13 58543406 58543427 -61201471 + AT_rich Low_complexity Low_complexity 1 21 0 841 246 69 20 chr13 58545931 58546137 -61198761 + LTR40a LTR ERVL 139 415 -104 1508 192 69 0 chr13 58546137 58546454 -61198444 + MER44D DNA MER2_type 1 609 0 841 246 69 20 chr13 58546454 58546563 -61198335 + LTR40a LTR ERVL 415 517 -2 184 373 20 0 chr13 58546604 58546706 -61198192 - L2 LINE L2 -1047 2267 2164 * 3382 86 10 58 chr13 58546693 58547237 -61197661 + MER41A LTR ERV1 40 554 0 321 297 77 28 chr13 58547301 58547483 -61197415 - L2 LINE L2 -1219 2095 1905 2145 111 0 3 chr13 58547767 58548087 -61196811 + AluSg SINE Alu 1 310 0 2165 180 13 40 chr13 58548267 58548740 -61196158 + L1MB7 LINE L1 5725 6184 0 202 269 75 119 chr13 58549449 58549583 -61195315 + L2 LINE L2 2934 3061 -211 1834 170 118 18 chr13 58549937 58550326 -61194572 - MSTA LTR MaLR 0 428 1 350 203 0 0 chr13 58550367 58550421 -61194477 + AluJ/FRAM SINE Alu 228 282 -16 252 0 0 0 chr13 58550421 58550449 -61194449 + (CA)n Simple_repeat Simple_repeat 1 28 0 234 91 0 0 chr13 58550468 58550501 -61194397 + (GA)n Simple_repeat Simple_repeat 2 34 0 25 51 0 0 chr13 58551969 58552008 -61192890 + AT_rich Low_complexity Low_complexity 1 39 0 1676 173 30 0 chr13 58552009 58552280 -61192618 - AluJb SINE Alu -29 283 5 184 288 9 81 chr13 58554750 58554861 -61190037 + L2 LINE L2 3211 3313 0 1571 138 47 108 chr13 58556466 58556828 -61188070 + MER67D LTR ERV1 1 340 -174 25 0 0 0 chr13 58557152 58557177 -61187721 + AT_rich Low_complexity Low_complexity 1 25 0 2223 143 8 6 chr13 58558630 58558993 -61185905 + MER47A DNA MER2_type 3 366 0 312 278 110 21 chr13 58559862 58560053 -61184845 + L1MDa LINE L1 1230 1437 -5103 24 32 0 0 chr13 58560068 58560099 -61184799 + AT_rich Low_complexity Low_complexity 1 31 0 205 161 0 0 chr13 58561450 58561481 -61183417 + T-rich Low_complexity Low_complexity 4 34 0 3993 101 13 0 chr13 58561831 58562376 -61182522 + MER41A LTR ERV1 3 554 0 448 303 87 13 chr13 58562753 58562984 -61181914 - MIR SINE MIR -13 249 2 180 111 0 0 chr13 58564161 58564188 -61180710 + (ATATG)n Simple_repeat Simple_repeat 4 30 0 3025 147 33 2 chr13 58565568 58566052 -61178846 + MER41E LTR ERV1 14 512 0 237 65 0 0 chr13 58566211 58566242 -61178656 + (TG)n Simple_repeat Simple_repeat 2 32 0 801 220 133 82 chr13 58566253 58566476 -61178422 + MLT1D LTR MaLR 1 211 -294 2158 107 7 0 chr13 58566476 58566781 -61178117 + AluSx SINE Alu 1 307 0 801 220 133 82 chr13 58566781 58566940 -61177958 + MLT1D LTR MaLR 211 499 -6 377 333 31 25 chr13 58567013 58567172 -61177726 - MER5A DNA MER1_type 0 189 30 703 224 80 0 chr13 58567683 58567884 -61177014 - L1MB2 LINE L1 -3 6232 6016 2876 187 31 8 chr13 58567885 58568559 -61176339 - L1MB2 LINE L1 -321 5914 5222 1467 221 94 8 chr13 58568564 58568957 -61175941 - MLT2B2 LTR ERVL -88 427 1 3852 240 23 14 chr13 58568962 58570038 -61174860 - L1MB2 LINE L1 -1191 5019 3934 409 252 50 29 chr13 58570211 58570350 -61174548 + LTR43 LTR ERV1 155 296 -306 1646 251 15 0 chr13 58570580 58570979 -61173919 - L1MB2 LINE L1 -2272 3938 3534 2206 133 104 8 chr13 58570981 58571365 -61173533 - MSTA LTR MaLR -7 421 1 1590 220 67 14 chr13 58571365 58571920 -61172978 - L1MB2 LINE L1 -2673 3537 2954 3139 241 40 89 chr13 58571923 58572546 -61172352 - L1MB2 LINE L1 -3312 2898 2246 1969 145 7 0 chr13 58572546 58572836 -61172062 - AluSg SINE Alu -18 292 1 3139 241 40 89 chr13 58572836 58574639 -61170259 - L1MB2 LINE L1 -3964 2246 605 6275 142 31 15 chr13 58574659 58576092 -61168806 - L1M1 LINE L1 -586 5719 4248 327 49 0 0 chr13 58576092 58576133 -61168765 + (TG)n Simple_repeat Simple_repeat 1 41 0 6275 142 31 15 chr13 58576133 58576259 -61168639 - L1M1 LINE L1 -2057 4248 4125 288 306 12 50 chr13 58576567 58576730 -61168168 - L1MB2 LINE L1 -5800 331 1 290 263 20 61 chr13 58576894 58576993 -61167905 + MIR SINE MIR 118 212 -50 7531 29 3 0 chr13 58577605 58578725 -61166173 + L1PA4 LINE L1 5033 6155 0 3761 131 39 89 chr13 58578900 58579727 -61165171 + LTR1 LTR ERV1 1 785 0 4391 190 74 38 chr13 58579730 58580848 -61164050 + HUERS-P2 LTR ERV1 5 1221 -1867 4088 133 60 0 chr13 58580845 58582104 -61162794 + pTR5 LTR ERV1 743 2468 0 * 5273 132 20 4 chr13 58582107 58582897 -61162001 + HUERS-P2 LTR ERV1 1218 2020 -1068 1647 141 8 0 chr13 58582895 58583136 -61161762 + HUERS-P2 LTR ERV1 2846 3088 0 * 1504 153 17 17 chr13 58583179 58583466 -61161432 + LTR1 LTR ERV1 1 287 -498 * 3164 147 42 43 chr13 58583454 58584052 -61160846 + LTR1 LTR ERV1 189 785 0 297 358 93 27 chr13 58584401 58584809 -61160089 + L2 LINE L2 2397 2831 -483 231 260 0 0 chr13 58584802 58584852 -61160046 - L2 LINE L2 -1 3312 3263 * 332 308 73 50 chr13 58585343 58585672 -61159226 + MLT1J2 LTR MaLR 40 390 -19 349 302 39 8 chr13 58585939 58586068 -61158830 - MIR SINE MIR -53 209 77 224 320 60 47 chr13 58586290 58586440 -61158458 + L2 LINE L2 3162 3313 0 1622 223 0 0 chr13 58586652 58586952 -61157946 - AluJb SINE Alu -12 300 1 2223 105 3 0 chr13 58587199 58587495 -61157403 - AluSx SINE Alu -15 297 1 26 30 0 0 chr13 58587759 58587792 -61157106 + AT_rich Low_complexity Low_complexity 1 33 0 22 88 0 0 chr13 58588807 58588864 -61156034 + AT_rich Low_complexity Low_complexity 1 57 0 602 187 7 7 chr13 58590764 58590903 -61153995 + L1MA7 LINE L1 6142 6280 -11 890 199 0 6 chr13 58591945 58592106 -61152792 + FRAM SINE Alu 1 160 -6 238 296 17 34 chr13 58592281 58592412 -61152486 + MIR SINE MIR 76 199 -9 2496 53 3 0 chr13 58592705 58593005 -61151893 + AluY SINE Alu 1 301 -10 6329 158 15 5 chr13 58593007 58595164 -61149734 - L1PB1 LINE L1 -10 6857 4679 1378 126 0 0 chr13 58595164 58595362 -61149536 + THE1A LTR MaLR 158 355 0 7167 106 78 15 chr13 58595362 58596957 -61147941 - L1PB1 LINE L1 -4383 2480 636 972 194 20 0 chr13 58596959 58597155 -61147743 - L1PB1 LINE L1 -6663 200 1 242 299 16 79 chr13 58597621 58597748 -61147150 + L2 LINE L2 3189 3307 -6 482 277 96 55 chr13 58597832 58598052 -61146846 - L2 LINE L2 -193 3120 2892 859 340 61 19 chr13 58598076 58598452 -61146446 - L2 LINE L2 -2876 438 47 360 167 39 50 chr13 58598546 58598726 -61146172 + (TATAA)n Simple_repeat Simple_repeat 3 180 0 25 31 0 0 chr13 58598892 58598924 -61145974 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr13 58599515 58599540 -61145358 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 58599986 58600009 -61144889 + AT_rich Low_complexity Low_complexity 1 23 0 307 237 32 122 chr13 58600283 58600439 -61144459 + MER46C DNA MER2_type 22 163 -175 236 381 95 0 chr13 58600516 58600663 -61144235 + L3 LINE CR1 1416 1576 -1 1365 198 24 44 chr13 58600836 58601129 -61143769 - AluJo SINE Alu -24 288 2 25 51 0 0 chr13 58603038 58603077 -61141821 + AT_rich Low_complexity Low_complexity 1 39 0 2483 53 0 0 chr13 58603077 58603379 -61141519 + AluY SINE Alu 1 302 -9 989 180 22 65 chr13 58603379 58603702 -61141196 - L1MC3 LINE L1 -29 7756 7448 2161 113 62 9 chr13 58603714 58604050 -61140848 + THE1B LTR MaLR 9 362 -2 1032 168 118 14 chr13 58604443 58604663 -61140235 + L1PA16 LINE L1 5908 6150 -16 29 28 0 0 chr13 58604663 58604699 -61140199 + AT_rich Low_complexity Low_complexity 1 36 0 2010 169 116 0 chr13 58604893 58605272 -61139626 - MSTA LTR MaLR -5 423 1 381 266 107 62 chr13 58605306 58605607 -61139291 + L1ME LINE L1 1564 2092 -809 28 0 0 0 chr13 58605722 58605750 -61139148 + AT_rich Low_complexity Low_complexity 1 28 0 308 234 28 97 chr13 58605960 58606105 -61138793 + L1ME LINE L1 2449 2583 -3957 1128 244 95 112 chr13 58606310 58607143 -61137755 + L1ME LINE L1 4184 5002 -1538 755 197 0 0 chr13 58607143 58607280 -61137618 - AluSc SINE Alu -33 276 140 702 196 34 14 chr13 58607333 58607481 -61137417 + FRAM SINE Alu 2 152 -14 303 239 276 0 chr13 58607494 58607628 -61137270 + L1ME LINE L1 5038 5208 -1332 766 239 40 5 chr13 58607641 58607842 -61137056 - MER3 DNA MER1_type 0 209 2 310 225 0 25 chr13 58607850 58607930 -61136968 + L1ME LINE L1 5223 5300 -1240 1628 240 70 29 chr13 58608063 58608832 -61136066 + L1ME LINE L1 5385 6183 -375 3081 90 4 29 chr13 58609505 58609960 -61134938 + MLT2A1 LTR ERVL 1 444 0 2151 103 3 0 chr13 58610625 58610916 -61133982 + AluY SINE Alu 1 292 -19 267 220 0 0 chr13 58611604 58611654 -61133244 + L2 LINE L2 3261 3310 -3 23 33 0 0 chr13 58611713 58611743 -61133155 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 58612361 58612391 -61132507 + AT_rich Low_complexity Low_complexity 1 30 0 389 147 27 0 chr13 58612959 58613034 -61131864 + L1PA15 LINE L1 6086 6162 -3 225 200 0 62 chr13 58614001 58614081 -61130817 - HAL1 LINE L1 -1385 1122 1048 350 284 138 34 chr13 58614398 58614666 -61130232 - HAL1 LINE L1 -13 2494 2199 1227 253 75 17 chr13 58614734 58615201 -61129697 - HAL1 LINE L1 -1030 1477 984 322 263 0 42 chr13 58615207 58615302 -61129596 - L1MC4 LINE L1 -1339 6703 6613 264 100 0 0 chr13 58615311 58615351 -61129547 + (CA)n Simple_repeat Simple_repeat 2 41 0 364 266 30 103 chr13 58615616 58615819 -61129079 - HAL1 LINE L1 -1988 519 332 347 299 95 7 chr13 58615864 58616001 -61128897 - HAL1 LINE L1 -2286 221 73 633 203 38 51 chr13 58616157 58616393 -61128505 + pTR5 LTR ERV1 743 975 -1463 3756 136 64 89 chr13 58616634 58617478 -61127420 + LTR12 LTR ERV1 3 825 -1 422 101 43 0 chr13 58617479 58617548 -61127350 + LTR12 LTR ERV1 582 653 -61 558 231 125 8 chr13 58617902 58618158 -61126740 + Charlie4a DNA MER1_type 142 427 -81 30 27 0 0 chr13 58618338 58618375 -61126523 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr13 58618973 58618995 -61125903 + AT_rich Low_complexity Low_complexity 1 22 0 2164 107 3 0 chr13 58619817 58620106 -61124792 + AluSq SINE Alu 1 290 -23 291 322 83 33 chr13 58622305 58622426 -61122472 - L2 LINE L2 -18 3295 3169 2255 77 0 22 chr13 58622528 58622840 -61122058 - AluY SINE Alu -6 305 1 247 114 0 0 chr13 58623104 58623139 -61121759 - U2 snRNA snRNA -152 36 2 221 357 0 0 chr13 58623163 58623233 -61121665 - MIR SINE MIR -122 140 71 1915 120 28 3 chr13 58624270 58624553 -61120345 + AluSx SINE Alu 1 290 -22 2441 51 0 7 chr13 58624559 58624853 -61120045 + AluY SINE Alu 1 292 -19 308 189 41 4 chr13 58624854 58625083 -61119815 + (TA)n Simple_repeat Simple_repeat 1 237 0 225 196 0 0 chr13 58625196 58625242 -61119656 + (CATA)n Simple_repeat Simple_repeat 3 48 0 955 300 59 87 chr13 58625308 58625648 -61119250 + L1MEc LINE L1 251 599 -6008 2028 135 7 0 chr13 58625648 58625951 -61118947 + AluSx SINE Alu 1 305 -7 955 300 59 87 chr13 58625951 58627296 -61117602 + L1MEc LINE L1 599 1889 -4718 3292 104 0 4 chr13 58627346 58627809 -61117089 + L1PA14 LINE L1 5668 6128 -33 452 254 67 36 chr13 58627814 58628038 -61116860 + L1MEc LINE L1 1940 2170 -4437 311 309 39 39 chr13 58628062 58628240 -61116658 + L1MEc LINE L1 2062 2239 -4187 3506 147 78 17 chr13 58628272 58628961 -61115937 + L1PA16 LINE L1 5256 5986 -180 993 171 6 6 chr13 58629064 58629240 -61115658 + L1PA16 LINE L1 5980 6155 -11 591 246 94 27 chr13 58629252 58629549 -61115349 + L1MEc LINE L1 2364 2680 -3927 257 386 49 18 chr13 58629864 58630027 -61114871 + L2 LINE L2 2923 3090 -182 255 311 54 0 chr13 58630550 58630624 -61114274 - L2 LINE L2 -4 3309 3232 35 24 0 0 chr13 58632409 58632451 -61112447 + AT_rich Low_complexity Low_complexity 1 42 0 1920 121 75 0 chr13 58632697 58632979 -61111919 + AluSx SINE Alu 1 303 -9 306 0 0 0 chr13 58636189 58636223 -61108675 + (CA)n Simple_repeat Simple_repeat 1 34 0 1998 194 0 6 chr13 58636582 58636942 -61107956 + MLT1A1 LTR MaLR 1 358 -7 339 202 28 9 chr13 58638363 58638472 -61106426 + CT-rich Low_complexity Low_complexity 2 112 0 434 224 6 19 chr13 58638507 58638663 -61106235 + CT-rich Low_complexity Low_complexity 1 154 0 180 77 0 0 chr13 58639473 58639499 -61105399 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 186 143 0 0 chr13 58640097 58640132 -61104766 + (CA)n Simple_repeat Simple_repeat 2 36 0 342 269 113 38 chr13 58640134 58640320 -61104578 + L1MC4a LINE L1 5760 5959 -1849 257 219 114 81 chr13 58640373 58640496 -61104402 + HAL1 LINE L1 2380 2506 -1 2399 77 0 6 chr13 58640496 58640809 -61104089 + AluY SINE Alu 1 311 0 1682 154 29 7 chr13 58640825 58641143 -61103755 + AluJb SINE Alu 1 324 0 23 54 0 0 chr13 58641331 58641368 -61103530 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 58641395 58641418 -61103480 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr13 58641704 58641735 -61103163 + AT_rich Low_complexity Low_complexity 1 31 0 1191 259 115 17 chr13 58641919 58642379 -61102519 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr13 58643501 58643522 -61101376 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 58643631 58643655 -61101243 + AT_rich Low_complexity Low_complexity 1 24 0 1595 229 54 19 chr13 58644166 58644576 -61100322 - MLT1D LTR MaLR -1 504 81 28 29 0 0 chr13 58645299 58645334 -61099564 + AT_rich Low_complexity Low_complexity 1 35 0 844 231 20 40 chr13 58645348 58645547 -61099351 - Charlie1a DNA MER1_type -1241 214 20 200 322 0 0 chr13 58647724 58647783 -61097115 + MIR SINE MIR 204 262 0 2147 149 13 10 chr13 58647999 58648387 -61096511 + L1MA4 LINE L1 5911 6299 -1 364 345 35 0 chr13 58648432 58648577 -61096321 + MIR SINE MIR 52 201 -61 2035 139 150 8 chr13 58648578 58648952 -61095946 - MSTA LTR MaLR 0 428 2 7777 229 31 32 chr13 58648962 58651975 -61092923 + L1PA11 LINE L1 1 4098 -3486 14211 161 43 14 chr13 58651977 58654862 -61090036 + L1PA11 LINE L1 4144 7109 -503 213 65 0 0 chr13 58654862 58654893 -61090005 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 14211 161 43 14 chr13 58654893 58655408 -61089490 + L1PA11 LINE L1 7109 7608 -4 2104 100 13 13 chr13 58655409 58655718 -61089180 + AluSc SINE Alu 1 309 0 257 75 0 25 chr13 58656203 58656243 -61088655 - MADE1 DNA Mariner 0 80 42 198 360 55 43 chr13 58657636 58657711 -61087187 - L2 LINE L2 -10 3262 3189 2308 82 16 0 chr13 58657711 58658017 -61086881 + AluY SINE Alu 1 311 0 198 360 55 43 chr13 58658017 58658105 -61086793 - L2 LINE L2 -83 3189 3097 2185 117 10 0 chr13 58658503 58658810 -61086088 + AluSx SINE Alu 1 310 -2 2016 55 92 22 chr13 58659521 58659792 -61085106 + AluY SINE Alu 1 290 -21 26 30 0 0 chr13 58661343 58661376 -61083522 + AT_rich Low_complexity Low_complexity 1 33 0 456 19 0 0 chr13 58662371 58662424 -61082474 + (TG)n Simple_repeat Simple_repeat 2 54 0 28 29 0 0 chr13 58662586 58662621 -61082277 + AT_rich Low_complexity Low_complexity 1 35 0 473 240 54 85 chr13 58662623 58662748 -61082150 - MER114 LTR ERV -12 636 522 2085 128 0 19 chr13 58662748 58663060 -61081838 + AluSq SINE Alu 1 306 -7 473 240 54 85 chr13 58663060 58663192 -61081706 - MER114 LTR ERV -126 522 387 5098 175 29 11 chr13 58663384 58665212 -61079686 - L1PA16 LINE L1 -1 6165 4271 875 238 15 5 chr13 58665214 58665420 -61079478 + L1PA16 LINE L1 4073 4280 -1866 290 139 56 42 chr13 58665421 58665493 -61079405 + MER113 DNA MER1_type? 117 189 -332 581 250 109 18 chr13 58665571 58665847 -61079051 - MER114 LTR ERV -268 380 80 1448 91 4 4 chr13 58665847 58666071 -61078827 - pTR5 LTR ERV1 -2046 392 67 311 274 10 0 chr13 58666071 58666173 -61078725 - LTR30 LTR ERV1 -79 643 541 3347 125 101 92 chr13 58666173 58667050 -61077848 - pTR5 LTR ERV1 -417 2021 833 349 161 0 0 chr13 58667051 58667113 -61077785 - MER114 LTR ERV -565 83 22 1992 88 64 0 chr13 58667230 58667513 -61077385 - AluY SINE Alu -10 301 1 21 0 0 0 chr13 58667513 58667534 -61077364 + AT_rich Low_complexity Low_complexity 1 21 0 899 136 0 0 chr13 58667534 58667666 -61077232 - AluY SINE Alu -179 132 1 222 156 0 0 chr13 58669110 58669155 -61075743 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 312 256 120 17 chr13 58669173 58669196 -61075702 - L1MA10 LINE L1 -19 6315 6293 787 279 30 61 chr13 58669196 58669670 -61075228 - L1ME1 LINE L1 -45 6121 5663 640 229 20 7 chr13 58669670 58669823 -61075075 + L1ME LINE L1 5299 5453 -713 360 269 76 0 chr13 58669825 58669944 -61074954 + MER65B LTR ERV1 1 128 -403 611 270 63 58 chr13 58669948 58670311 -61074587 + MER65A LTR ERV1 79 443 -2 588 292 20 12 chr13 58670313 58670556 -61074342 + L1ME LINE L1 5452 5667 -499 288 263 111 20 chr13 58670557 58670656 -61074242 + MIR SINE MIR 64 171 -91 789 167 8 0 chr13 58670754 58670886 -61074012 + FLAM_C SINE Alu 1 133 0 1745 169 18 70 chr13 58671278 58671662 -61073236 + MLT1A1 LTR MaLR 1 364 -1 2195 153 5 13 chr13 58674032 58674405 -61070493 - THE1C LTR MaLR -1 374 5 207 299 54 68 chr13 58675810 58675957 -61068941 - L2 LINE L2 -5 3308 3164 265 306 107 42 chr13 58676615 58676971 -61067927 + L1MC/D LINE L1 4672 5050 -1096 24 0 0 0 chr13 58677034 58677058 -61067840 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr13 58677058 58677083 -61067815 + (TG)n Simple_repeat Simple_repeat 2 26 0 325 277 60 36 chr13 58677222 58677388 -61067510 + L1MC/D LINE L1 5306 5475 -2333 450 367 20 14 chr13 58677871 58678134 -61066764 + MIR SINE MIR 1 262 0 28 48 0 0 chr13 58678848 58678890 -61066008 + AT_rich Low_complexity Low_complexity 1 42 0 253 340 32 11 chr13 58679354 58679448 -61065450 - L2 LINE L2 0 3313 3218 261 330 80 35 chr13 58679549 58679749 -61065149 - MIR SINE MIR -17 245 37 436 203 156 0 chr13 58680150 58680278 -61064620 + MER53 DNA DNA 40 187 -2 2132 84 3 52 chr13 58681944 58682254 -61062644 + AluSg SINE Alu 1 295 -15 9433 183 35 22 chr13 58682261 58682385 -61062513 + L1MA7 LINE L1 3275 3396 -2895 2365 83 7 0 chr13 58682385 58682685 -61062213 + AluSc SINE Alu 3 304 -5 9433 183 35 22 chr13 58682685 58683452 -61061446 + L1MA7 LINE L1 3396 4152 -2139 195 42 0 0 chr13 58683452 58683476 -61061422 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 9433 183 35 22 chr13 58683476 58685550 -61059348 + L1MA7 LINE L1 4152 6286 -5 478 222 0 0 chr13 58686553 58686643 -61058255 + MER3 DNA MER1_type 1 90 -119 * 714 199 82 0 chr13 58686604 58686750 -61058148 - MER3 DNA MER1_type -4 205 48 602 272 130 47 chr13 58687433 58687687 -61057211 - L3 LINE CR1 -1057 520 246 2780 76 0 0 chr13 58689364 58689719 -61055179 - THE1A LTR MaLR 0 355 1 186 71 0 0 chr13 58690220 58690248 -61054650 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr13 58690988 58691009 -61053889 + AT_rich Low_complexity Low_complexity 1 21 0 409 292 130 35 chr13 58691074 58691358 -61053540 - MLT1J1 LTR MaLR -115 331 21 185 382 11 0 chr13 58692065 58692154 -61052744 - L2 LINE L2 -1732 1582 1493 248 241 26 103 chr13 58693169 58693285 -61051613 - L3 LINE CR1 -7 1570 1464 24 32 0 0 chr13 58693888 58693919 -61050979 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 58694346 58694367 -61050531 + AT_rich Low_complexity Low_complexity 1 21 0 242 125 21 0 chr13 58694452 58694500 -61050398 + (TA)n Simple_repeat Simple_repeat 1 49 0 2012 114 0 13 chr13 58694575 58694873 -61050025 + AluSg SINE Alu 17 310 0 220 319 126 25 chr13 58695911 58696030 -61048868 + L3 LINE CR1 366 496 -1081 217 371 57 0 chr13 58697230 58697335 -61047563 + MIR SINE MIR 56 166 -96 191 308 39 13 chr13 58697487 58697565 -61047333 + L3 LINE CR1 628 707 -870 22 35 0 0 chr13 58699083 58699112 -61045786 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr13 58699646 58699670 -61045228 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 474 178 195 81 chr13 58699841 58700015 -61044883 - MLT1A1 LTR MaLR -171 194 1 1138 213 143 27 chr13 58700087 58700415 -61044483 + MLT1A2 LTR MaLR 5 370 -4 493 56 125 2 chr13 58700676 58701154 -61043744 + (TA)n Simple_repeat Simple_repeat 1 536 0 290 79 56 79 chr13 58701121 58701299 -61043599 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 * 327 341 54 45 chr13 58702180 58702304 -61042594 - LTR16C LTR ERVL 0 491 370 2110 204 35 2 chr13 58702304 58702756 -61042142 - MLT1C LTR MaLR 0 467 1 327 341 54 45 chr13 58702756 58702962 -61041936 - LTR16C LTR ERVL -121 370 158 270 287 66 59 chr13 58703579 58703715 -61041183 + L3 LINE CR1 423 559 -1018 347 340 40 67 chr13 58704580 58704880 -61040018 - LTR16A LTR ERVL -10 440 149 298 211 11 21 chr13 58705397 58705492 -61039406 + (TATG)n Simple_repeat Simple_repeat 3 96 0 22 35 0 0 chr13 58705558 58705587 -61039311 + AT_rich Low_complexity Low_complexity 1 29 0 1740 220 8 3 chr13 58705736 58706099 -61038799 - MLT1A1 LTR MaLR 0 365 1 11139 159 53 6 chr13 58706168 58708159 -61036739 + Ricksha_c DNA DNA 8 2046 0 22 56 0 0 chr13 58709313 58709349 -61035549 + AT_rich Low_complexity Low_complexity 1 36 0 275 293 130 8 chr13 58710055 58710178 -61034720 + L2 LINE L2 3168 3305 -8 185 373 75 0 chr13 58710367 58710434 -61034464 - L2 LINE L2 -52 3220 3149 342 0 0 0 chr13 58711333 58711371 -61033527 + (CA)n Simple_repeat Simple_repeat 2 39 0 197 280 235 8 chr13 58712861 58712993 -61031905 + MIR SINE MIR 101 262 0 1634 122 3 81 chr13 58713057 58713421 -61031477 - MER4A LTR ERV1 0 664 261 551 175 0 10 chr13 58713423 58713520 -61031378 - MER4A LTR ERV1 -568 96 1 372 320 47 31 chr13 58714639 58714830 -61030068 - L1MC4 LINE L1 -932 7110 6880 2151 251 22 45 chr13 58714836 58715506 -61029392 - L1ME1 LINE L1 -5 6161 5507 2289 214 127 100 chr13 58715533 58715761 -61029137 - L1ME1 LINE L1 -757 5389 5169 1832 134 55 7 chr13 58715761 58716052 -61028846 + AluSx SINE Alu 1 305 -7 2289 214 127 100 chr13 58716052 58716556 -61028342 - L1ME1 LINE L1 -977 5169 4680 2083 117 7 3 chr13 58716556 58716856 -61028042 + AluSx SINE Alu 2 302 -10 2289 214 127 100 chr13 58716856 58717582 -61027316 - L1ME1 LINE L1 -1466 4680 3909 377 257 186 9 chr13 58717646 58717856 -61027042 - L1MC4 LINE L1 -1907 5901 5655 414 276 76 36 chr13 58717869 58718119 -61026779 - L1MC4 LINE L1 -2294 5514 5255 26 30 0 0 chr13 58718150 58718183 -61026715 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr13 58718318 58718348 -61026550 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 58718377 58718398 -61026500 + (TA)n Simple_repeat Simple_repeat 2 22 0 279 0 0 0 chr13 58720007 58720038 -61024860 + (CA)n Simple_repeat Simple_repeat 2 32 0 1678 176 17 3 chr13 58720411 58720701 -61024197 + AluJb SINE Alu 1 294 -18 214 244 0 0 chr13 58721037 58721078 -61023820 + polypurine Low_complexity Low_complexity 2 42 0 209 301 88 26 chr13 58721079 58721192 -61023706 + L2 LINE L2 1698 1817 -1497 2193 175 82 62 chr13 58721224 58721807 -61023091 - LTR49 LTR ERV1 0 595 1 2320 211 30 18 chr13 58721910 58722408 -61022490 - LTR49-int LTR ERV1 -4098 2233 1730 1106 175 130 33 chr13 58722465 58722796 -61022102 + LTR49 LTR ERV1 238 595 0 352 186 28 117 chr13 58722830 58722975 -61021923 - LTR49-int LTR ERV1 -4610 1721 1590 4730 212 69 52 chr13 58723512 58724865 -61020033 - LTR49-int LTR ERV1 -4955 1376 1 688 123 9 9 chr13 58724867 58724981 -61019917 - LTR49 LTR ERV1 0 595 482 6962 140 199 19 chr13 58724985 58726423 -61018475 - pTR5 LTR ERV1 0 2438 742 297 159 58 29 chr13 58726427 58726496 -61018402 - LTR48 LTR ERV1 -115 672 602 * 1773 157 108 59 chr13 58726477 58726886 -61018012 - LTR49 LTR ERV1 -160 435 7 538 92 0 0 chr13 58727127 58727203 -61017695 - LTR24 LTR ERV1 0 467 392 689 84 19 19 chr13 58727206 58727313 -61017585 - LTR23 LTR ERV1 -330 107 1 448 257 84 55 chr13 58727527 58727729 -61017169 + L2 LINE L2 1866 2073 -1241 3756 137 33 80 chr13 58727824 58728647 -61016251 - LTR1 LTR ERV1 -1 784 1 244 417 48 21 chr13 58728769 58729059 -61015839 + L2 LINE L2 2809 3106 -166 2064 120 0 0 chr13 58729526 58729837 -61015061 + AluY SINE Alu 1 311 0 31 0 0 0 chr13 58729935 58729966 -61014932 + AT_rich Low_complexity Low_complexity 1 31 0 327 96 0 0 chr13 58730113 58730165 -61014733 + (TG)n Simple_repeat Simple_repeat 2 53 0 2358 153 66 18 chr13 58730165 58730602 -61014296 - LOR1b LTR ERV1 -3 458 1 28 0 0 0 chr13 58731662 58731690 -61013208 + AT_rich Low_complexity Low_complexity 1 28 0 285 140 0 40 chr13 58731694 58731744 -61013154 - AluJo SINE Alu -14 288 241 1363 166 36 0 chr13 58731810 58732033 -61012865 - AluJo SINE Alu -81 231 1 3676 93 205 0 chr13 58732281 58732852 -61012046 + LTR12 LTR ERV1 1 688 0 21 0 0 0 chr13 58733374 58733395 -61011503 + AT_rich Low_complexity Low_complexity 1 21 0 232 387 73 0 chr13 58733625 58733749 -61011149 - L3b LINE CR1 -55 1528 1396 228 284 0 62 chr13 58734876 58734957 -61009941 - L2 LINE L2 -1 3312 3237 21 36 0 0 chr13 58736174 58736202 -61008696 + AT_rich Low_complexity Low_complexity 1 28 0 219 139 0 0 chr13 58736224 58736260 -61008638 + (TA)n Simple_repeat Simple_repeat 1 36 0 16577 95 4 3 chr13 58737710 58740936 -61003962 + L1PA7 LINE L1 2914 6154 0 1485 169 28 0 chr13 58741741 58742031 -61002867 + L1MA8 LINE L1 5994 6291 0 270 224 13 40 chr13 58742840 58742916 -61001982 + MIR3 SINE MIR 130 203 -5 299 305 107 23 chr13 58744877 58745054 -60999844 - MIR3 SINE MIR -7 201 10 2275 118 0 6 chr13 58745581 58745895 -60999003 - AluSx SINE Alu 0 312 1 204 195 24 49 chr13 58746069 58746151 -60998747 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 210 246 53 0 chr13 58746790 58746847 -60998051 + L3b LINE CR1 1330 1389 -194 693 266 35 46 chr13 58746868 58747093 -60997805 - MIR SINE MIR 0 262 38 1374 184 71 4 chr13 58747093 58747393 -60997505 + AluJb SINE Alu 1 318 0 693 266 35 46 chr13 58747393 58747425 -60997473 - MIR SINE MIR -224 38 7 1970 93 10 58 chr13 58747491 58747802 -60997096 + AluSg SINE Alu 1 296 -14 244 337 10 20 chr13 58747808 58747906 -60996992 - MIR3 SINE MIR -54 154 58 22 0 0 0 chr13 58749838 58749860 -60995038 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr13 58750193 58750218 -60994680 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 346 313 0 0 chr13 58750834 58750933 -60993965 - L2 LINE L2 0 3313 3215 26 30 0 0 chr13 58751112 58751145 -60993753 + AT_rich Low_complexity Low_complexity 1 33 0 1119 276 107 40 chr13 58751947 58752490 -60992408 + MLT1K LTR MaLR 2 580 -8 265 350 36 36 chr13 58752876 58753016 -60991882 + L2 LINE L2 2329 2468 -846 1279 218 20 82 chr13 58753033 58753162 -60991736 - MLT1A2 LTR MaLR -8 366 231 2297 154 3 3 chr13 58753162 58753526 -60991372 - THE1B LTR MaLR 0 364 1 1279 218 20 82 chr13 58753526 58753678 -60991220 - MLT1A2 LTR MaLR -143 231 113 2035 97 4 0 chr13 58753678 58753945 -60990953 - AluSp SINE Alu -13 300 33 1279 218 20 82 chr13 58753945 58754052 -60990846 - MLT1A2 LTR MaLR -261 113 1 334 429 51 7 chr13 58754052 58754327 -60990571 + L2 LINE L2 2469 2755 -559 207 114 0 0 chr13 58754457 58754492 -60990406 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 58754738 58754759 -60990139 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr13 58754848 58754880 -60990018 + AT_rich Low_complexity Low_complexity 1 32 0 527 324 89 0 chr13 58755269 58755482 -60989416 + MIR SINE MIR 1 232 -30 220 175 18 18 chr13 58755482 58755539 -60989359 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 270 235 29 0 chr13 58755585 58755653 -60989245 + MER103 DNA DNA 34 103 -63 22 0 0 0 chr13 58757711 58757733 -60987165 + AT_rich Low_complexity Low_complexity 1 22 0 2380 82 0 10 chr13 58757749 58758055 -60986843 - AluSq SINE Alu -10 303 1 253 218 61 51 chr13 58758055 58758214 -60986684 - MIR SINE MIR -16 246 32 236 328 144 23 chr13 58758301 58758475 -60986423 - L3 LINE CR1 -208 1369 1175 808 147 0 8 chr13 58758591 58758720 -60986178 + AluSq/x SINE Alu 4 131 -181 180 0 0 0 chr13 58759238 58759258 -60985640 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 58760173 58760194 -60984704 + AT_rich Low_complexity Low_complexity 1 21 0 189 219 134 61 chr13 58760960 58761042 -60983856 + MIR SINE MIR 121 208 -54 27 49 0 0 chr13 58761906 58761947 -60982951 + AT_rich Low_complexity Low_complexity 1 41 0 182 359 103 17 chr13 58764291 58764408 -60980490 + MIR3 SINE MIR 1 127 -81 3051 64 31 0 chr13 58764806 58765235 -60979663 - L1P5 LINE L1 -370 5781 5338 263 271 12 12 chr13 58766180 58766265 -60978633 + MIR SINE MIR 74 158 -104 2321 244 40 33 chr13 58767977 58768707 -60976191 - L1ME2 LINE L1 -7 6157 5423 319 229 73 0 chr13 58768809 58768918 -60975980 - L1ME2 LINE L1 -810 5370 5254 2881 125 56 25 chr13 58768975 58769104 -60975794 - L1M1 LINE L1 -566 5739 5616 1853 157 10 16 chr13 58769104 58769416 -60975482 - AluSx SINE Alu -2 310 1 2881 125 56 25 chr13 58769416 58769911 -60974987 - L1M1 LINE L1 -689 5616 5070 1402 250 102 39 chr13 58769953 58770618 -60974280 - L1ME2 LINE L1 -1784 4362 3656 454 237 89 12 chr13 58770887 58771056 -60973842 + L1ME3A LINE L1 5988 6169 -1 1568 214 45 19 chr13 58771576 58771955 -60972943 - MLT1B LTR MaLR -1 389 1 204 381 66 33 chr13 58772467 58772711 -60972187 + L2 LINE L2 2642 2893 -421 244 233 84 69 chr13 58773442 58773644 -60971254 - MER113 DNA MER1_type? -298 223 19 363 303 144 5 chr13 58773872 58774060 -60970838 - L2 LINE L2 -1210 2104 1891 28 0 0 0 chr13 58774376 58774404 -60970494 + AT_rich Low_complexity Low_complexity 1 28 0 830 100 0 0 chr13 58774727 58774837 -60970061 + AluY SINE Alu 189 298 -13 363 336 58 13 chr13 58774837 58775063 -60969835 - L2 LINE L2 -1036 2278 2043 919 174 0 0 chr13 58777568 58777723 -60967175 - FRAM SINE Alu -8 168 14 3910 138 35 70 chr13 58778284 58779095 -60965803 + LTR1 LTR ERV1 3 784 -1 578 285 85 0 chr13 58779480 58779645 -60965253 + MIR SINE MIR 67 245 -17 216 200 0 0 chr13 58779648 58779688 -60965210 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 199 330 155 3 chr13 58780105 58780247 -60964651 - MIR SINE MIR -71 191 30 1764 158 78 0 chr13 58781702 58782037 -60962861 + MER46B DNA MER2_type 1 236 0 1080 117 0 0 chr13 58782439 58782635 -60962263 - L1PA16 LINE L1 -4 6162 5877 1833 161 3 16 chr13 58782639 58782955 -60961943 - AluJo SINE Alu 0 312 1 337 240 77 19 chr13 58783107 58783211 -60961687 + LTR16A1 LTR ERVL 245 354 -103 245 374 46 8 chr13 58784904 58785035 -60959863 - L2 LINE L2 -15 3257 3122 226 246 0 0 chr13 58785038 58785095 -60959803 + A-rich Low_complexity Low_complexity 1 57 0 459 79 45 11 chr13 58785318 58785407 -60959491 + CT-rich Low_complexity Low_complexity 3 94 0 1895 172 10 34 chr13 58787926 58788310 -60956588 - THE1C LTR MaLR 0 375 1 9474 129 21 57 chr13 58788310 58789949 -60954949 - THE1C-int LTR MaLR 0 1580 1 1809 166 18 44 chr13 58789949 58790334 -60954564 - THE1C LTR MaLR 0 375 1 1447 169 44 0 chr13 58790518 58790588 -60954310 + AluJb SINE Alu 48 113 -199 285 29 0 0 chr13 58790588 58790622 -60954276 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1447 169 44 0 chr13 58790622 58790800 -60954098 + AluJb SINE Alu 113 307 -5 225 353 135 24 chr13 58790900 58791189 -60953709 - L2 LINE L2 -428 2886 2566 230 366 63 37 chr13 58791583 58791774 -60953124 - MIR SINE MIR -45 217 22 315 314 112 16 chr13 58793590 58793778 -60951120 + MIR SINE MIR 1 206 -56 249 83 0 0 chr13 58794058 58794094 -60950804 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 1782 136 0 4 chr13 58794220 58794485 -60950413 + AluJb SINE Alu 33 296 -16 446 297 21 52 chr13 58795807 58795999 -60948899 - MIR3 SINE MIR -13 195 10 2848 244 64 16 chr13 58796938 58797803 -60947095 + L1MC4 LINE L1 7130 8035 -7 587 294 57 36 chr13 58797864 58798112 -60946786 - MIR SINE MIR -6 256 4 254 260 39 52 chr13 58798287 58798364 -60946534 + L2 LINE L2 3238 3313 0 182 307 124 29 chr13 58799881 58800018 -60944880 + MIR3 SINE MIR 32 181 -27 1290 121 11 0 chr13 58800028 58800210 -60944688 - Tigger3(Golem) DNA MER2_type -1 3028 2845 241 233 0 0 chr13 58800407 58800480 -60944418 - L1M4 LINE L1 -968 5989 5917 * 398 237 155 63 chr13 58800452 58800818 -60944080 - L1MEc LINE L1 -5173 1809 1344 601 348 33 17 chr13 58801112 58801414 -60943484 - L1MEc LINE L1 -6031 1107 801 224 313 46 46 chr13 58802899 58803030 -60941868 - MIR SINE MIR -129 133 3 1877 105 122 98 chr13 58804607 58804678 -60940220 - MSTA LTR MaLR 0 428 360 2152 142 0 3 chr13 58804678 58804989 -60939909 + AluSx SINE Alu 1 310 -2 2040 154 3 3 chr13 58804997 58805309 -60939589 + AluSx SINE Alu 1 312 0 1877 105 122 98 chr13 58805309 58805646 -60939252 - MSTA LTR MaLR -74 354 1 429 279 134 30 chr13 58806321 58806590 -60938308 + MLT1L LTR MaLR 312 608 -7 239 306 109 20 chr13 58806735 58806882 -60938016 - L3 LINE CR1 -6 1571 1412 21 82 0 0 chr13 58807351 58807400 -60937498 + AT_rich Low_complexity Low_complexity 1 49 0 390 280 21 11 chr13 58810233 58810326 -60934572 + MER5A DNA MER1_type 96 189 0 22 0 0 0 chr13 58811243 58811265 -60933633 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 58811360 58811389 -60933509 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 58814267 58814288 -60930610 + AT_rich Low_complexity Low_complexity 1 21 0 280 309 132 26 chr13 58814462 58814614 -60930284 - MIR SINE MIR -10 252 85 1804 183 71 26 chr13 58815148 58815682 -60929216 - MLT2A2 LTR ERVL 0 554 1 355 260 102 73 chr13 58816009 58816071 -60928827 - LTR33 LTR ERVL -63 458 399 1787 255 112 11 chr13 58816071 58816608 -60928290 + MLT1E LTR MaLR 3 593 0 355 260 102 73 chr13 58816608 58816852 -60928046 - LTR33 LTR ERVL -122 399 112 470 156 0 13 chr13 58816903 58816980 -60927918 - MLT1C LTR MaLR 0 467 392 2129 154 6 6 chr13 58816992 58817322 -60927576 + MER1B DNA MER1_type 10 339 0 1377 230 55 18 chr13 58817322 58817702 -60927196 - MLT1C LTR MaLR -71 396 3 25 83 0 0 chr13 58818542 58818602 -60926296 + AT_rich Low_complexity Low_complexity 1 60 0 2565 50 0 3 chr13 58818860 58819163 -60925735 + AluY SINE Alu 1 302 -9 196 371 34 34 chr13 58819391 58819569 -60925329 + L2 LINE L2 2345 2522 -792 421 243 126 9 chr13 58819614 58819725 -60925173 + MIR SINE MIR 69 192 -70 27 49 0 0 chr13 58821586 58821627 -60923271 + AT_rich Low_complexity Low_complexity 1 41 0 2917 116 14 0 chr13 58821752 58822174 -60922724 - MSTA LTR MaLR 0 428 1 222 37 0 0 chr13 58823198 58823225 -60921673 + (A)n Simple_repeat Simple_repeat 1 27 0 217 213 0 66 chr13 58823343 58823404 -60921494 - L2 LINE L2 -93 3220 3164 230 266 16 0 chr13 58823434 58823498 -60921400 - MIR SINE MIR 0 262 198 1036 275 85 37 chr13 58823498 58823934 -60920964 + LTR16A1 LTR ERVL 1 457 0 582 287 81 6 chr13 58823942 58824116 -60920782 - MIR SINE MIR -68 194 8 22 35 0 0 chr13 58824597 58824626 -60920272 + AT_rich Low_complexity Low_complexity 1 29 0 1658 157 18 24 chr13 58824866 58825197 -60919701 - L1MA7 LINE L1 -1 6290 5962 612 264 10 46 chr13 58825750 58825947 -60918951 + MIR SINE MIR 5 194 -68 662 206 4 138 chr13 58827462 58827640 -60917258 - MER20 DNA MER1_type 0 219 83 2244 97 3 0 chr13 58827640 58827929 -60916969 + AluSp SINE Alu 10 299 -14 662 206 4 138 chr13 58827929 58828003 -60916895 - MER20 DNA MER1_type -136 83 1 260 321 0 0 chr13 58828012 58828096 -60916802 + MLT1J LTR MaLR 95 178 -333 251 331 81 29 chr13 58828379 58828551 -60916347 + MIR SINE MIR 81 261 -1 25 51 0 0 chr13 58829391 58829430 -60915468 + AT_rich Low_complexity Low_complexity 1 39 0 410 316 0 15 chr13 58830740 58830873 -60914025 + MIR SINE MIR 126 256 -6 189 287 17 113 chr13 58831454 58831569 -60913329 - L2 LINE L2 -10 3303 3200 322 274 88 84 chr13 58831823 58832097 -60912801 - L2 LINE L2 -462 2852 2578 2038 146 7 0 chr13 58832142 58832444 -60912454 + AluSx SINE Alu 1 304 -8 1107 223 31 66 chr13 58832754 58833148 -60911750 + MLT2B1 LTR ERVL 13 412 -2 416 254 85 39 chr13 58833198 58833328 -60911570 - MIR SINE MIR -115 147 12 2031 108 3 49 chr13 58833639 58833945 -60910953 + AluSg SINE Alu 1 292 -18 409 238 8 63 chr13 58834311 58834437 -60910461 - MER5C DNA MER1_type -202 122 4 209 281 42 103 chr13 58834509 58834772 -60910126 - L2 LINE L2 -801 2513 2267 6026 104 16 0 chr13 58834837 58836177 -60908721 + L1PA13 LINE L1 4806 6163 0 358 233 27 123 chr13 58836218 58836253 -60908645 - MIR SINE MIR -72 190 153 2176 80 17 3 chr13 58836253 58836541 -60908357 - AluY SINE Alu -19 292 1 358 233 27 123 chr13 58836541 58836651 -60908247 - MIR SINE MIR -109 153 59 21 0 0 0 chr13 58836708 58836729 -60908169 + AT_rich Low_complexity Low_complexity 1 21 0 2140 112 10 3 chr13 58837513 58837818 -60907080 - AluSc SINE Alu -2 307 1 236 330 89 9 chr13 58837850 58837962 -60906936 + MIR SINE MIR 13 133 -129 224 122 24 0 chr13 58839183 58839224 -60905674 + CT-rich Low_complexity Low_complexity 1 42 0 1101 218 105 49 chr13 58839615 58839959 -60904939 - MLT1A1 LTR MaLR -2 363 1 384 284 41 59 chr13 58839965 58840134 -60904764 + MIR SINE MIR 65 230 -32 296 339 95 12 chr13 58840157 58840325 -60904573 + L3 LINE CR1 1395 1576 -1 235 317 134 27 chr13 58840423 58840647 -60904251 - MLT1L LTR MaLR -5 610 363 2068 114 3 3 chr13 58841678 58841968 -60902930 + AluY SINE Alu 1 290 -21 22 0 0 0 chr13 58842233 58842255 -60902643 + AT_rich Low_complexity Low_complexity 1 22 0 196 320 120 53 chr13 58843947 58844097 -60900801 + MIR SINE MIR 57 216 -46 312 206 143 24 chr13 58844278 58844404 -60900494 + MLT1K LTR MaLR 374 514 -74 208 260 65 52 chr13 58845436 58845513 -60899385 - L2 LINE L2 -39 3233 3156 902 332 226 14 chr13 58845978 58846911 -60897987 + L3 LINE CR1 446 1576 -1 1620 196 0 23 chr13 58848328 58848634 -60896264 + AluJb SINE Alu 1 299 -13 349 303 117 7 chr13 58850004 58850149 -60894749 - MIR SINE MIR -51 211 51 22 35 0 0 chr13 58852129 58852158 -60892740 + AT_rich Low_complexity Low_complexity 1 29 0 473 280 20 7 chr13 58854341 58854491 -60890407 + MER63 DNA MER1_type 1 778 -284 621 218 181 58 chr13 58854493 58854719 -60890179 - MLT1E LTR MaLR 0 567 321 2031 93 127 30 chr13 58855002 58855334 -60889564 - THE1B LTR MaLR 0 364 1 11224 100 21 4 chr13 58855334 58856888 -60888010 - THE1B-int LTR MaLR 0 1580 1 2338 114 48 14 chr13 58856888 58857240 -60887658 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr13 58857258 58857281 -60887617 + AT_rich Low_complexity Low_complexity 1 23 0 1674 176 0 45 chr13 58857370 58857683 -60887215 - AluJo SINE Alu -1 311 13 672 289 92 36 chr13 58857697 58858108 -60886790 + LTR68 LTR ERV1 1 434 -306 1157 354 59 33 chr13 58858285 58859014 -60885884 + L2 LINE L2 270 1017 -2297 322 319 87 84 chr13 58859031 58859781 -60885117 + L2 LINE L2 2284 3053 -219 23 54 0 0 chr13 58859874 58859911 -60884987 + AT_rich Low_complexity Low_complexity 1 37 0 270 0 0 0 chr13 58860580 58860610 -60884288 + (CA)n Simple_repeat Simple_repeat 2 31 0 467 274 20 39 chr13 58861225 58861429 -60883469 - L2 LINE L2 0 3313 3114 201 39 0 0 chr13 58861572 58861598 -60883300 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 210 294 20 0 chr13 58861701 58861752 -60883146 - L2 LINE L2 -485 2829 2778 1530 327 103 43 chr13 58861793 58862234 -60882664 - L2 LINE L2 -672 2642 2229 2033 108 3 36 chr13 58862234 58862539 -60882359 + AluY SINE Alu 1 295 -16 1530 327 103 43 chr13 58862539 58862983 -60881915 - L2 LINE L2 -1085 2229 1813 231 36 0 0 chr13 58862983 58863011 -60881887 + (TA)n Simple_repeat Simple_repeat 2 29 0 1530 327 103 43 chr13 58863011 58863465 -60881433 - L2 LINE L2 -1501 1813 1222 208 121 0 0 chr13 58863579 58863612 -60881286 + (TG)n Simple_repeat Simple_repeat 2 34 0 2799 7 0 0 chr13 58863928 58864231 -60880667 - AluYa5 SINE Alu -8 303 1 38 39 0 0 chr13 58865135 58865187 -60879711 + AT_rich Low_complexity Low_complexity 1 52 0 3235 137 42 2 chr13 58866569 58867122 -60877776 + Tigger3b DNA MER2_type 1 575 -656 387 259 183 15 chr13 58868873 58869004 -60875894 - MIR3 SINE MIR -16 192 40 306 303 78 26 chr13 58869082 58869299 -60875599 + MER112 DNA MER1_type 5 236 -24 1604 181 46 0 chr13 58869299 58869580 -60875318 - AluJo SINE Alu -18 294 1 306 303 78 26 chr13 58869580 58869593 -60875305 + MER112 DNA MER1_type 236 247 -13 2171 117 3 0 chr13 58872554 58872853 -60872045 - AluSq SINE Alu -13 300 1 1486 121 152 8 chr13 58972994 58973251 -60771647 - AluSq SINE Alu -9 294 1 841 275 43 102 chr13 58973266 58973757 -60771141 + MLT1F1 LTR MaLR 72 533 -34 230 132 44 15 chr13 58974012 58974080 -60770818 + (TA)n Simple_repeat Simple_repeat 2 71 0 1473 260 96 63 chr13 58974178 58974742 -60770156 + HAL1 LINE L1 1106 1705 -802 1363 250 43 3 chr13 58974742 58975070 -60769828 - MER58B DNA MER1_type 0 341 1 1473 260 96 63 chr13 58975070 58975283 -60769615 + HAL1 LINE L1 1705 1909 -598 200 182 45 0 chr13 58975411 58975455 -60769443 + A-rich Low_complexity Low_complexity 5 50 0 353 191 59 0 chr13 58975563 58975631 -60769267 - Tigger5 DNA MER2_type -5 2318 2247 * 424 203 0 13 chr13 58975626 58975705 -60769193 + Tigger5 DNA MER2_type 2242 2319 -4 340 182 15 15 chr13 58975706 58975772 -60769126 - Tigger5 DNA MER2_type -2245 78 13 384 256 64 30 chr13 58975799 58976002 -60768896 + HAL1 LINE L1 2036 2245 -262 301 257 29 9 chr13 58976014 58976119 -60768779 + HAL1 LINE L1 2290 2396 -111 693 303 73 38 chr13 58976428 58976771 -60768127 + L2 LINE L2 2941 3295 -18 313 309 264 0 chr13 58977544 58977722 -60767176 + L1ME4a LINE L1 5355 5579 -542 22 0 0 0 chr13 58977796 58977818 -60767080 + AT_rich Low_complexity Low_complexity 1 22 0 1683 175 3 18 chr13 58977878 58978188 -60766710 + AluJo SINE Alu 1 306 0 296 250 45 9 chr13 58978195 58978307 -60766591 + L1ME4a LINE L1 5765 5880 -241 539 304 98 10 chr13 58979333 58979527 -60765371 - MIR SINE MIR -16 246 36 2210 138 39 14 chr13 58979940 58980295 -60764603 - THE1B LTR MaLR 0 364 1 11577 100 4 2 chr13 58980295 58981872 -60763026 - THE1B-int LTR MaLR 0 1580 1 1408 143 45 22 chr13 58981874 58982097 -60762801 - THE1B LTR MaLR -12 352 125 4460 180 76 10 chr13 58984273 58985030 -60759868 + L1MA4 LINE L1 5101 5968 -332 267 54 0 0 chr13 58985030 58985067 -60759831 + (CA)n Simple_repeat Simple_repeat 2 38 0 4460 180 76 10 chr13 58985067 58985400 -60759498 + L1MA4 LINE L1 5968 6277 -23 979 272 87 54 chr13 58985914 58986454 -60758444 + MLT2E LTR ERVL 6 626 -2 2076 105 27 17 chr13 58986683 58986979 -60757919 + AluSx SINE Alu 2 300 -12 1342 223 69 25 chr13 58987480 58987843 -60757055 - MLT1B LTR MaLR -11 379 1 4802 182 14 1 chr13 58989517 58990498 -60754400 - L1PB4 LINE L1 -1 6155 5162 836 210 54 73 chr13 58990501 58990815 -60754083 + L1PB4 LINE L1 4852 5159 -987 797 280 60 27 chr13 58991550 58991848 -60753050 + L1MCa LINE L1 572 848 -5197 450 218 78 53 chr13 58991844 58992087 -60752811 + L1MCa LINE L1 1300 1548 -5016 * 940 297 16 16 chr13 58992100 58992535 -60752363 + L1M4 LINE L1 3197 3631 -2515 646 216 7 0 chr13 58992539 58992687 -60752211 + L1M4 LINE L1 4798 4946 -1200 9284 148 26 37 chr13 58992723 58993963 -60750935 - Tigger1 DNA MER2_type 0 2418 1202 1946 162 0 0 chr13 58993963 58994265 -60750633 + AluSq SINE Alu 1 302 -11 9284 148 26 37 chr13 58994265 58994736 -60750162 - Tigger1 DNA MER2_type -1216 1202 727 222 62 0 0 chr13 58994750 58994782 -60750116 + (TTA)n Simple_repeat Simple_repeat 3 34 0 17878 30 3 1 chr13 58994782 58997690 -60747208 - L1PA3 LINE L1 -18 6137 3226 4654 23 2 2 chr13 58997690 58998260 -60746638 + L1PA3 LINE L1 2649 3218 -2928 3066 159 25 0 chr13 58998272 58998800 -60746098 - Tigger1 DNA MER2_type -1693 725 185 4542 314 111 39 chr13 58999092 58999570 -60745328 - L2 LINE L2 -1 3312 2870 351 0 0 0 chr13 58999570 58999609 -60745289 + (TA)n Simple_repeat Simple_repeat 1 39 0 4542 314 111 39 chr13 58999609 59000640 -60744258 - L2 LINE L2 -443 2870 1915 2237 68 21 4 chr13 59000640 59000920 -60743978 - AluY SINE Alu -26 285 1 4542 314 111 39 chr13 59000920 59001153 -60743745 - L2 LINE L2 -1398 1915 1700 249 33 0 0 chr13 59001153 59001183 -60743715 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4542 314 111 39 chr13 59001183 59002488 -60742410 - L2 LINE L2 -1613 1700 36 28 48 0 0 chr13 59004132 59004174 -60740724 + AT_rich Low_complexity Low_complexity 1 42 0 234 233 178 14 chr13 59004637 59004710 -60740188 - MIR SINE MIR -10 252 168 363 263 88 15 chr13 59005256 59005393 -60739505 + MLT1J1 LTR MaLR 2 148 -298 2219 307 233 6 chr13 59005938 59007119 -60737779 - L2 LINE L2 -1341 1973 525 2727 146 20 2 chr13 59007120 59007579 -60737319 + L1P LINE L1 3856 4322 -1824 503 193 46 0 chr13 59007587 59007696 -60737202 - MLT1C LTR MaLR -353 114 1 588 201 97 8 chr13 59007739 59007873 -60737025 - MLT1C LTR MaLR -316 151 6 1555 112 0 0 chr13 59008065 59008279 -60736619 + AluSx SINE Alu 1 214 -98 2586 117 31 8 chr13 59008436 59008828 -60736070 + LTR9 LTR ERV1 212 612 0 5295 198 50 8 chr13 59008829 59010019 -60734879 + L1 LINE L1 3995 5235 -911 2632 178 22 20 chr13 59010211 59010712 -60734186 + MER67C LTR ERV1 1 502 -208 1394 143 0 0 chr13 59010780 59011010 -60733888 + L1P LINE L1 4212 4441 -1705 * 6034 113 2 0 chr13 59011007 59011881 -60733017 + L1P LINE L1 3893 4768 -1378 519 263 32 0 chr13 59011879 59012065 -60732833 - L1ME LINE L1 -715 5449 5258 * 1793 113 0 33 chr13 59012357 59012631 -60732267 - AluSq SINE Alu -48 265 1 230 194 28 28 chr13 59013167 59013239 -60731659 + (TA)n Simple_repeat Simple_repeat 1 72 0 550 319 112 28 chr13 59014153 59014918 -60729980 + HAL1 LINE L1 878 1707 -800 4552 138 11 15 chr13 59015244 59015997 -60728901 - L1PA15 LINE L1 -3 6162 5413 32 57 0 0 chr13 59016004 59016057 -60728841 + AT_rich Low_complexity Low_complexity 1 53 0 496 192 0 115 chr13 59016067 59016197 -60728701 + L2 LINE L2 3193 3307 -6 180 0 0 0 chr13 59017586 59017606 -60727292 + (A)n Simple_repeat Simple_repeat 1 20 0 245 87 0 22 chr13 59018962 59019008 -60725890 + (TA)n Simple_repeat Simple_repeat 1 45 0 25 75 0 0 chr13 59019023 59019076 -60725822 + AT_rich Low_complexity Low_complexity 1 53 0 255 333 122 8 chr13 59019488 59019611 -60725287 - MIR SINE MIR -115 147 11 261 0 0 0 chr13 59020149 59020178 -60724720 + (CAA)n Simple_repeat Simple_repeat 2 30 0 234 346 12 0 chr13 59021091 59021172 -60723726 + L2 LINE L2 3232 3313 0 1496 147 52 130 chr13 59021592 59021999 -60722899 + THE1C LTR MaLR 1 375 0 11084 113 1 1 chr13 59022000 59023578 -60721320 + THE1B-int LTR MaLR 2 1580 0 1994 135 39 33 chr13 59023578 59023940 -60720958 + THE1B LTR MaLR 1 364 0 201 235 39 0 chr13 59025847 59025898 -60719000 - L2 LINE L2 -5 3308 3256 33 25 0 0 chr13 59026524 59026564 -60718334 + AT_rich Low_complexity Low_complexity 1 40 0 738 233 70 51 chr13 59027298 59027513 -60717385 + MER20 DNA MER1_type 1 219 0 343 292 110 33 chr13 59027873 59028180 -60716718 - MLT1J2 LTR MaLR -23 420 94 215 386 94 0 chr13 59028290 59028417 -60716481 - L2 LINE L2 0 3272 3134 29 0 0 0 chr13 59028797 59028826 -60716072 + AT_rich Low_complexity Low_complexity 1 29 0 574 264 46 110 chr13 59029033 59029534 -60715364 + MLT1J LTR MaLR 42 510 -1 926 266 118 45 chr13 59029715 59029989 -60714909 - L1ME3A LINE L1 -12 6158 5905 1549 192 89 9 chr13 59029989 59030327 -60714571 + MLT1A1 LTR MaLR 1 365 0 926 266 118 45 chr13 59030327 59030647 -60714251 - L1ME3A LINE L1 -265 5905 5520 21 89 0 0 chr13 59030959 59031015 -60713883 + AT_rich Low_complexity Low_complexity 1 56 0 200 371 56 11 chr13 59031919 59032008 -60712890 - L2 LINE L2 -43 3229 3137 230 246 43 14 chr13 59032139 59032208 -60712690 + MIR SINE MIR 118 188 -74 423 353 32 11 chr13 59032280 59032470 -60712428 - MIR SINE MIR -26 236 43 6448 25 0 1 chr13 59035453 59036207 -60708691 - L1PA3 LINE L1 0 6155 5403 256 385 50 0 chr13 59036906 59037067 -60707831 - L2 LINE L2 -1885 1429 1261 277 315 60 27 chr13 59038083 59038232 -60706666 - MIR SINE MIR -73 189 36 220 317 24 37 chr13 59038414 59038496 -60706402 - MIR SINE MIR -131 131 51 180 328 17 17 chr13 59038774 59038832 -60706066 + L2 LINE L2 3201 3258 -14 242 324 159 6 chr13 59040007 59040177 -60704721 - MIR SINE MIR 0 262 67 915 276 147 54 chr13 59040649 59041087 -60703811 + L1MCa LINE L1 56 449 -5596 3837 88 24 0 chr13 59041563 59042098 -60702800 + MER41A LTR ERV1 1 548 -6 345 299 45 140 chr13 59043185 59043208 -60701690 + L2 LINE L2 2286 2310 -1004 3443 118 31 6 chr13 59043208 59043421 -60701477 - MER41C LTR ERV1 0 554 348 189 0 0 0 chr13 59043421 59043442 -60701456 + (TA)n Simple_repeat Simple_repeat 1 21 0 3443 118 31 6 chr13 59043442 59043768 -60701130 - MER41C LTR ERV1 -206 348 1 345 299 45 140 chr13 59043768 59044101 -60700797 + L2 LINE L2 2310 2570 -744 2089 127 3 0 chr13 59044101 59044409 -60700489 - AluSg SINE Alu -1 309 1 345 299 45 140 chr13 59044409 59044622 -60700276 + L2 LINE L2 2570 2802 -512 581 308 181 23 chr13 59044734 59045166 -60699732 + L2 LINE L2 2809 3308 -5 332 326 28 7 chr13 59046173 59046317 -60698581 - MER69 DNA AcHobo -2379 147 1 2178 112 0 3 chr13 59046571 59046866 -60698032 + AluSg SINE Alu 1 294 -16 4193 196 6 7 chr13 59046958 59047908 -60696990 - L1MA9 LINE L1 -14 6298 5254 230 162 0 0 chr13 59047906 59047943 -60696955 + L1 LINE L1 3952 3988 -2158 * 530 81 0 0 chr13 59047952 59048026 -60696872 + LTR9 LTR ERV1 1 74 -538 22 70 0 0 chr13 59048490 59048533 -60696365 + AT_rich Low_complexity Low_complexity 1 43 0 298 227 36 9 chr13 59049099 59049209 -60695689 + (TA)n Simple_repeat Simple_repeat 1 113 0 * 307 240 41 12 chr13 59049184 59049355 -60695543 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 * 350 202 45 34 chr13 59049320 59049498 -60695400 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 308 262 24 12 chr13 59049497 59049661 -60695237 + (TATAA)n Simple_repeat Simple_repeat 5 170 0 * 50 14 0 28 chr13 59049661 59049684 -60695214 + AT_rich Low_complexity Low_complexity 1 23 -47 1986 149 0 0 chr13 59049684 59049973 -60694925 - AluSx SINE Alu -23 289 1 50 14 0 28 chr13 59049973 59050021 -60694877 + AT_rich Low_complexity Low_complexity 23 70 0 268 229 18 11 chr13 59050021 59050301 -60694597 + (TA)n Simple_repeat Simple_repeat 1 282 0 1565 181 122 20 chr13 59050302 59050808 -60694090 - MLT2A2 LTR ERVL 0 554 1 244 294 8 17 chr13 59050808 59050927 -60693971 + (TA)n Simple_repeat Simple_repeat 2 119 0 27 49 0 0 chr13 59051271 59051312 -60693586 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 59052200 59052225 -60692673 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 59052689 59052712 -60692186 + AT_rich Low_complexity Low_complexity 1 23 0 229 338 79 44 chr13 59053494 59053722 -60691176 + MIR SINE MIR 27 262 0 2313 172 64 9 chr13 59054054 59054491 -60690407 + LOR1b LTR ERV1 1 461 0 2094 163 24 21 chr13 59054582 59054963 -60689935 - LTR8 LTR ERV1 0 691 310 1094 174 0 15 chr13 59055010 59055206 -60689692 - LTR8 LTR ERV1 -382 309 117 7577 27 0 0 chr13 59055224 59056172 -60688726 - L1PA4 LINE L1 -3 6152 5205 6996 20 0 1 chr13 59056172 59057005 -60687893 + L1PA4 LINE L1 4375 5206 -940 615 226 22 0 chr13 59057005 59057142 -60687756 - LTR8A LTR ERV1 -587 140 1 28 0 0 0 chr13 59057698 59057726 -60687172 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr13 59057750 59057785 -60687113 + AT_rich Low_complexity Low_complexity 1 35 0 203 204 19 0 chr13 59058841 59058895 -60686003 + (TA)n Simple_repeat Simple_repeat 2 56 0 691 225 0 0 chr13 59058991 59059120 -60685778 + MER94 DNA DNA 6 134 0 183 325 0 100 chr13 59060252 59060372 -60684526 + L2 LINE L2 3159 3266 -47 22 0 0 0 chr13 59060398 59060420 -60684478 + AT_rich Low_complexity Low_complexity 1 22 0 208 156 0 78 chr13 59062370 59062434 -60682464 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 204 158 0 0 chr13 59062487 59062525 -60682373 + (TA)n Simple_repeat Simple_repeat 2 39 0 312 295 26 0 chr13 59062559 59062715 -60682183 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr13 59062739 59062761 -60682137 + AT_rich Low_complexity Low_complexity 1 22 0 415 314 25 38 chr13 59063613 59063772 -60681126 + MIR SINE MIR 1 157 -105 2796 299 71 16 chr13 59063915 59064882 -60680016 + L1MDa LINE L1 19 1038 -5502 303 186 14 0 chr13 59064881 59064951 -60679947 + L1MB3 LINE L1 6085 6155 -28 * 353 219 34 0 chr13 59064951 59065070 -60679828 + (TA)n Simple_repeat Simple_repeat 2 124 0 180 111 0 0 chr13 59065118 59065145 -60679753 + (TA)n Simple_repeat Simple_repeat 2 28 0 3003 220 137 22 chr13 59065277 59066396 -60678502 + L1MDa LINE L1 1025 2271 -4269 303 323 20 0 chr13 59066758 59066857 -60678041 + ERVL LTR ERVL 3644 3744 -2020 2208 113 3 0 chr13 59066860 59067170 -60677728 - AluSq SINE Alu 0 313 3 817 100 0 0 chr13 59067380 59067490 -60677408 - AluJb SINE Alu -179 133 24 371 138 35 0 chr13 59067543 59067601 -60677297 + AluJ/FLAM SINE Alu 14 73 -229 499 301 146 48 chr13 59067608 59068020 -60676878 + ERVL LTR ERVL 4010 4461 -1303 395 181 147 35 chr13 59069801 59069917 -60674981 + MER5B DNA MER1_type 15 143 -35 270 56 0 0 chr13 59069961 59069997 -60674901 + (CA)n Simple_repeat Simple_repeat 2 37 0 926 331 82 59 chr13 59070332 59071420 -60673478 + ERVL LTR ERVL 1622 2734 -3030 4830 136 66 51 chr13 59071423 59072726 -60672172 + pTR5 LTR ERV1 742 2355 -83 1981 94 38 7 chr13 59072726 59073014 -60671884 - AluY SINE Alu -14 297 1 4830 136 66 51 chr13 59073014 59073100 -60671798 + pTR5 LTR ERV1 2355 2438 0 271 332 116 42 chr13 59073231 59073541 -60671357 + ERVL LTR ERVL 2891 3223 -2541 295 351 43 22 chr13 59073702 59073887 -60671011 + ERVL LTR ERVL 4361 4549 -1215 2228 90 0 20 chr13 59074177 59074476 -60670422 - AluY SINE Alu -17 294 2 2680 141 95 8 chr13 59074522 59075005 -60669893 - L1PA16 LINE L1 -7 6159 5635 5109 187 36 10 chr13 59075185 59076720 -60668178 + L1MA8 LINE L1 4725 6288 -3 500 278 28 17 chr13 59077654 59077830 -60667068 - L1ME LINE L1 -381 5789 5612 480 234 170 32 chr13 59077929 59078155 -60666743 - MER31B LTR ERV1 -244 241 15 246 290 96 52 chr13 59078165 59078489 -60666409 - L1ME LINE L1 -579 5591 5254 495 137 14 0 chr13 59078535 59078608 -60666290 - MER2 DNA MER2_type -270 75 2 21 71 0 0 chr13 59079185 59079227 -60665671 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr13 59081961 59081989 -60662909 + AT_rich Low_complexity Low_complexity 1 28 0 817 213 6 6 chr13 59082429 59082593 -60662305 + FRAM SINE Alu 1 164 -12 312 322 49 7 chr13 59082857 59083000 -60661898 - MIR SINE MIR -14 248 100 23 0 0 0 chr13 59083565 59083588 -60661310 + AT_rich Low_complexity Low_complexity 1 23 0 526 281 152 0 chr13 59084640 59084804 -60660094 - MIR3 SINE MIR -1 207 19 2358 98 0 0 chr13 59085068 59085373 -60659525 + AluSx SINE Alu 1 305 -7 309 282 10 19 chr13 59086077 59086180 -60658718 - L1ME LINE L1 -1550 4596 4495 351 239 0 0 chr13 59086209 59086297 -60658601 + (TA)n Simple_repeat Simple_repeat 1 88 0 691 250 22 9 chr13 59086297 59086521 -60658377 - L1ME LINE L1 -1704 4442 4216 22 35 0 0 chr13 59086683 59086712 -60658186 + AT_rich Low_complexity Low_complexity 1 29 0 318 50 0 0 chr13 59087041 59087081 -60657817 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr13 59087082 59087102 -60657796 + (GA)n Simple_repeat Simple_repeat 1 20 0 600 340 68 0 chr13 59087336 59087571 -60657327 + MIR SINE MIR 8 258 -4 458 264 138 13 chr13 59088073 59088232 -60656666 - MER5A DNA MER1_type 0 189 11 21 0 0 0 chr13 59088938 59088959 -60655939 + AT_rich Low_complexity Low_complexity 1 21 0 2463 216 49 13 chr13 59089093 59089705 -60655193 - L1MD3 LINE L1 -9 7986 7353 321 136 25 25 chr13 59089803 59089884 -60655014 + CT-rich Low_complexity Low_complexity 4 84 0 321 296 32 17 chr13 59090200 59090382 -60654516 - L1MCc LINE L1 -5889 533 8 378 91 0 0 chr13 59091448 59091503 -60653395 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr13 59092573 59092594 -60652304 + AT_rich Low_complexity Low_complexity 1 21 0 2134 76 44 0 chr13 59094450 59094725 -60650173 + AluY SINE Alu 1 287 -24 1483 205 90 116 chr13 59094893 59095578 -60649320 + LTR28 LTR ERV1 105 966 -54 460 236 8 55 chr13 59095633 59095760 -60649138 + LTR28 LTR ERV1 900 1020 0 1461 215 0 27 chr13 59097121 59097419 -60647479 + AluJb SINE Alu 6 295 -17 27 29 0 0 chr13 59097789 59097823 -60647075 + AT_rich Low_complexity Low_complexity 1 34 0 227 230 8 79 chr13 59098395 59098521 -60646377 + L1M4 LINE L1 5127 5243 -903 633 239 0 22 chr13 59098529 59098682 -60646216 + FLAM_A SINE Alu 1 133 0 374 113 0 14 chr13 59098705 59098776 -60646122 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 1539 164 6 61 chr13 59099423 59099735 -60645163 + AluJb SINE Alu 7 301 -11 29 75 0 21 chr13 59099858 59099929 -60644969 + AT_rich Low_complexity Low_complexity 1 71 -20 1888 201 45 2 chr13 59099929 59100332 -60644566 - L1MA6 LINE L1 0 6300 5881 29 75 0 21 chr13 59100332 59100353 -60644545 + AT_rich Low_complexity Low_complexity 71 91 0 190 343 108 20 chr13 59101290 59101392 -60643506 - L2 LINE L2 -199 3073 2963 2087 123 19 13 chr13 59104343 59104653 -60640245 + AluSx SINE Alu 1 312 0 233 380 0 0 chr13 59104911 59104982 -60639916 - L3 LINE CR1 -477 1100 1030 296 329 113 9 chr13 59104998 59105046 -60639852 - MIR SINE MIR -15 247 205 577 281 108 16 chr13 59105046 59105352 -60639546 + MER46C DNA MER2_type 5 338 0 296 329 113 9 chr13 59105352 59105398 -60639500 - MIR SINE MIR -57 205 165 2286 111 13 49 chr13 59105398 59105785 -60639113 - THE1C LTR MaLR -2 373 1 296 329 113 9 chr13 59105785 59105902 -60638996 - MIR SINE MIR -97 165 13 2080 52 8 0 chr13 59106178 59106445 -60638453 - L1PA7 LINE L1 0 6154 5886 230 336 26 35 chr13 59107167 59107283 -60637615 - L2 LINE L2 0 3313 3199 540 256 0 28 chr13 59107602 59107778 -60637120 - L1MEc LINE L1 -3647 2568 2398 3914 220 21 21 chr13 59107794 59111704 -60633194 - L1PB4 LINE L1 -3 7591 3487 703 310 57 63 chr13 59111736 59112262 -60632636 - L1PB4 LINE L1 -6421 1164 11 1263 282 101 42 chr13 59112278 59113791 -60631107 - L1MEc LINE L1 -3965 2431 829 33 0 0 0 chr13 59113924 59113957 -60630941 + AT_rich Low_complexity Low_complexity 1 33 0 336 270 157 22 chr13 59114335 59114520 -60630378 - L1MEc LINE L1 -5859 346 137 25 31 0 0 chr13 59114814 59114846 -60630052 + AT_rich Low_complexity Low_complexity 1 32 0 219 263 0 0 chr13 59116023 59116080 -60628818 + T-rich Low_complexity Low_complexity 1 57 0 2146 108 0 3 chr13 59116902 59117198 -60627700 - AluSg SINE Alu -15 295 1 30 93 0 0 chr13 59117339 59117425 -60627473 + AT_rich Low_complexity Low_complexity 1 86 0 253 368 63 0 chr13 59117462 59117557 -60627341 + L2 LINE L2 2897 2997 -316 1790 229 11 42 chr13 59117894 59118371 -60626527 + MLT1D LTR MaLR 42 503 -2 615 263 108 80 chr13 59118481 59119008 -60625890 - L1ME LINE L1 -351 5811 5268 326 261 171 25 chr13 59119020 59119219 -60625679 - L1ME LINE L1 -913 5233 5006 733 245 68 32 chr13 59119269 59119518 -60625380 - L1MA4 LINE L1 -6 6294 6037 406 269 178 11 chr13 59119686 59119950 -60624948 - L1ME LINE L1 -1346 4800 4493 354 284 81 56 chr13 59120379 59120664 -60624234 + MLT1I LTR MaLR 116 407 -2 576 113 0 0 chr13 59121125 59121205 -60623693 + MADE1 DNA Mariner 1 80 0 297 0 0 0 chr13 59122511 59122544 -60622354 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 1418 172 44 7 chr13 59122560 59122724 -60622174 - AluSx SINE Alu -3 309 128 1009 13 57 6 chr13 59122724 59122882 -60622016 + (TTTTA)n Simple_repeat Simple_repeat 2 167 0 1418 172 44 7 chr13 59122882 59123013 -60621885 - AluSx SINE Alu -184 128 3 463 291 96 59 chr13 59123091 59123579 -60621319 + L1ME LINE L1 5317 5822 -348 678 162 0 0 chr13 59123685 59123790 -60621108 - Tigger1 DNA MER2_type -1 2417 2313 4086 177 20 8 chr13 59123822 59124706 -60620192 - L1MC1 LINE L1 -293 6040 5149 431 296 9 0 chr13 59225145 59225260 -60519638 - MER94 DNA DNA -3 131 16 1770 155 3 23 chr13 59225480 59225789 -60519109 - AluJb SINE Alu -9 303 1 28 86 0 0 chr13 59226300 59226370 -60518528 + AT_rich Low_complexity Low_complexity 1 70 0 206 278 37 0 chr13 59226480 59226534 -60518364 - L2 LINE L2 0 3313 3258 250 362 0 11 chr13 59226685 59226779 -60518119 - MIR SINE MIR -121 141 49 1167 124 30 5 chr13 59226810 59227011 -60517887 - L1PB2 LINE L1 -2 6149 5944 2697 137 14 12 chr13 59227752 59228182 -60516716 - MSTB1 LTR MaLR -1 431 1 229 300 11 11 chr13 59229689 59229779 -60515119 + HAL1 LINE L1 1585 1674 -833 1365 134 38 8 chr13 59230107 59230346 -60514552 + L1PA16 LINE L1 5912 6157 -9 1812 159 0 24 chr13 59230381 59230677 -60514221 + AluJb SINE Alu 3 291 -21 31 92 0 0 chr13 59231481 59231568 -60513330 + AT_rich Low_complexity Low_complexity 1 87 0 240 239 0 28 chr13 59231672 59231781 -60513117 + GA-rich Low_complexity Low_complexity 3 108 0 384 189 21 0 chr13 59231889 59231984 -60512914 + GA-rich Low_complexity Low_complexity 3 99 0 383 348 93 34 chr13 59232503 59232891 -60512007 + L1 LINE L1 3574 3984 -2162 1168 298 70 0 chr13 59233114 59233486 -60511412 + LTR16A LTR ERVL 53 450 0 308 287 11 23 chr13 59233625 59233712 -60511186 + MIR3 SINE MIR 113 198 -10 365 358 55 79 chr13 59233909 59234163 -60510735 - L2 LINE L2 0 3272 3025 396 301 0 8 chr13 59234502 59234635 -60510263 - MER94 DNA DNA -2 132 1 214 353 136 15 chr13 59234805 59235077 -60509821 - L2 LINE L2 -553 2761 2457 433 214 237 23 chr13 59235401 59235663 -60509235 - MER69 DNA AcHobo -7 2519 2202 698 186 50 111 chr13 59235677 59235876 -60509022 - MER20 DNA MER1_type -5 214 28 1325 223 28 28 chr13 59235897 59235922 -60508976 - MER69 DNA AcHobo -317 2209 2185 1548 194 26 59 chr13 59235922 59236143 -60508755 - MLT1A2 LTR MaLR 0 374 170 2202 118 3 0 chr13 59236143 59236439 -60508459 - AluSx SINE Alu -13 299 3 1548 194 26 59 chr13 59236439 59236604 -60508294 - MLT1A2 LTR MaLR -204 170 1 1325 223 28 28 chr13 59236604 59236941 -60507957 - MER69 DNA AcHobo -340 2186 1847 1009 237 22 9 chr13 59237322 59237546 -60507352 - LTR16B LTR ERVL 0 464 238 1005 230 44 54 chr13 59237760 59238077 -60506821 - MER69 DNA AcHobo -865 361 48 2293 119 6 8 chr13 59238085 59238445 -60506453 + MER6 DNA MER2_type 507 865 0 25 0 0 0 chr13 59239665 59239690 -60505208 + AT_rich Low_complexity Low_complexity 1 25 0 1039 277 160 34 chr13 59239751 59240657 -60504241 - L2 LINE L2 0 3313 2302 182 309 0 36 chr13 59240847 59240902 -60503996 + MIR3 SINE MIR 108 160 -48 214 377 55 7 chr13 59241152 59241298 -60503600 + MIR SINE MIR 53 205 -57 403 266 140 21 chr13 59241547 59241690 -60503208 - MIR SINE MIR -21 241 82 443 318 116 30 chr13 59241981 59242509 -60502389 + L2 LINE L2 2357 2929 -385 299 322 52 35 chr13 59242776 59242891 -60502007 + L2 LINE L2 3139 3255 -17 315 206 6 119 chr13 59243370 59243480 -60501418 - MLT1I LTR MaLR -255 167 106 1587 136 92 28 chr13 59243480 59243797 -60501101 - MER1B DNA MER1_type 0 337 1 315 206 6 119 chr13 59243797 59243848 -60501050 - MLT1I LTR MaLR -316 106 51 293 205 0 26 chr13 59244747 59244825 -60500073 + GA-rich Low_complexity Low_complexity 4 79 0 312 194 161 77 chr13 59244891 59245139 -60499759 - HAL1b LINE L1 -310 1038 770 574 295 29 9 chr13 59245140 59245350 -60499548 + L2 LINE L2 2844 3057 -256 401 150 50 30 chr13 59245982 59246082 -60498816 + L1MA4A LINE L1 6197 6298 -5 2497 40 20 16 chr13 59246268 59246571 -60498327 - AluY SINE Alu -7 304 1 21 0 0 0 chr13 59246609 59246630 -60498268 + AT_rich Low_complexity Low_complexity 1 21 0 2068 157 3 3 chr13 59246999 59247351 -60497547 - L1MA4A LINE L1 -121 6182 5832 203 182 23 0 chr13 59248693 59248737 -60496161 + (TG)n Simple_repeat Simple_repeat 2 46 0 435 52 0 0 chr13 59251050 59251108 -60493790 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 961 229 93 95 chr13 59251598 59252073 -60492825 + MLT1J LTR MaLR 4 477 -34 180 0 0 0 chr13 59252420 59252440 -60492458 + (A)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr13 59252798 59252828 -60492070 + AT_rich Low_complexity Low_complexity 1 30 0 212 0 36 0 chr13 59253039 59253067 -60491831 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 904 171 5 57 chr13 59253195 59253346 -60491552 - MER96B DNA MER1_type? -183 234 96 1942 119 0 52 chr13 59253346 59253656 -60491242 + AluSg SINE Alu 1 294 -16 904 171 5 57 chr13 59253656 59253715 -60491183 - MER96B DNA MER1_type? -321 96 35 220 190 138 0 chr13 59255069 59255127 -60489771 + L3b LINE CR1 1322 1387 -196 3606 276 117 42 chr13 59256246 59257593 -60487305 - L2 LINE L2 0 3313 2068 2269 91 47 0 chr13 59257593 59257890 -60487008 + AluSx SINE Alu 1 311 -1 3606 276 117 42 chr13 59257890 59258875 -60486023 - L2 LINE L2 -1245 2068 780 583 299 45 45 chr13 59258902 59259123 -60485775 - L2 LINE L2 -3092 222 2 562 125 0 0 chr13 59259651 59259747 -60485151 - MER53 DNA DNA 0 189 94 2633 55 0 3 chr13 59259856 59260167 -60484731 + AluY SINE Alu 1 310 -1 1348 192 124 112 chr13 59263596 59264397 -60480501 - LTR1B LTR ERV1 -4 822 13 1861 130 0 4 chr13 59264688 59264950 -60479948 + AluSx SINE Alu 7 267 -45 322 329 70 6 chr13 59265007 59265165 -60479733 - MIR3 SINE MIR 0 208 41 2346 101 7 0 chr13 59265634 59265940 -60478958 + AluSp SINE Alu 1 308 -5 313 333 93 54 chr13 59266499 59266853 -60478045 + L2 LINE L2 2425 2792 -522 313 261 7 7 chr13 59267498 59267636 -60477262 + GA-rich Low_complexity Low_complexity 2 139 0 342 321 149 20 chr13 59269004 59269306 -60475592 - L2 LINE L2 -470 2844 2504 1327 226 117 32 chr13 59270635 59271078 -60473820 + MLT1D LTR MaLR 25 505 0 975 206 200 31 chr13 59273342 59273542 -60471356 - LTR50 LTR ERVL -1 794 629 1090 132 65 115 chr13 59273542 59273882 -60471016 + MER33 DNA MER1_type 1 323 -1 975 206 200 31 chr13 59273882 59274275 -60470623 - LTR50 LTR ERVL -166 629 9 529 261 123 43 chr13 59274278 59274489 -60470409 - L2 LINE L2 -8 3305 3078 1146 298 157 8 chr13 59275265 59275787 -60469111 - L2 LINE L2 -208 3105 2513 842 299 124 43 chr13 59276658 59276922 -60467976 - L2 LINE L2 -1442 1872 1631 369 109 0 0 chr13 59276922 59276977 -60467921 + (TG)n Simple_repeat Simple_repeat 2 56 0 842 299 124 43 chr13 59276977 59277335 -60467563 - L2 LINE L2 -1683 1631 1200 1047 107 6 0 chr13 59277448 59277617 -60467281 - L1PA8 LINE L1 -121 6051 5882 353 281 97 39 chr13 59277643 59278151 -60466747 + L1ME4a LINE L1 5574 6110 -11 406 320 213 42 chr13 59278955 59280047 -60464851 + L2 LINE L2 1700 2977 -337 216 0 0 0 chr13 59280252 59280276 -60464622 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 256 344 35 105 chr13 59280286 59280716 -60464182 - L2 LINE L2 -50 3222 2823 3571 116 11 9 chr13 59280965 59281516 -60463382 - L1PA13 LINE L1 -6 6157 5606 204 298 59 12 chr13 59281640 59281748 -60463150 + MIR SINE MIR 35 152 -69 263 272 204 10 chr13 59283157 59283260 -60461638 - MIR SINE MIR -58 150 28 278 283 81 20 chr13 59283941 59284040 -60460858 + MIR SINE MIR 145 249 -13 1472 195 73 114 chr13 59284105 59284747 -60460151 + L1MD2 LINE L1 5735 6350 -9 2163 51 0 0 chr13 59285322 59285577 -60459321 + AluY SINE Alu 1 255 -56 682 193 234 11 chr13 59286043 59286308 -60458590 - MER5C DNA MER1_type 0 324 1 2267 100 0 0 chr13 59287959 59288250 -60456648 - AluSx SINE Alu -21 291 1 30 0 0 0 chr13 59288253 59288283 -60456615 + AT_rich Low_complexity Low_complexity 1 30 0 3472 128 15 34 chr13 59288289 59288754 -60456144 - L1MA5 LINE L1 -3 6297 5825 1995 112 13 48 chr13 59288754 59289067 -60455831 - AluSq SINE Alu -11 302 1 3472 128 15 34 chr13 59289067 59289116 -60455782 - L1MA5 LINE L1 -475 5825 5777 234 62 0 0 chr13 59289116 59289148 -60455750 + (TA)n Simple_repeat Simple_repeat 2 33 0 696 182 91 45 chr13 59289154 59289336 -60455562 - FRAM SINE Alu 0 166 5 3472 128 15 34 chr13 59289336 59289468 -60455430 - L1MA5 LINE L1 -528 5772 5655 204 158 0 0 chr13 59290073 59290111 -60454787 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 491 176 46 30 chr13 59290463 59290594 -60454304 + L1MA8 LINE L1 6058 6190 -101 539 114 57 0 chr13 59290648 59290753 -60454145 + L1MA8 LINE L1 6181 6291 0 1677 173 32 0 chr13 59290767 59291045 -60453853 + AluJb SINE Alu 1 287 -25 609 270 139 9 chr13 59291164 59291394 -60453504 + MIR SINE MIR 3 262 0 221 394 56 19 chr13 59291974 59292190 -60452708 + L3 LINE CR1 190 413 -1164 257 301 90 66 chr13 59293863 59294029 -60450869 - MER5A DNA MER1_type 0 189 20 262 287 53 11 chr13 59294823 59294917 -60449981 + MER93a LTR ERV1 5 102 -300 706 155 39 136 chr13 59294922 59295111 -60449787 - L1MA8 LINE L1 0 6291 6132 2050 116 3 10 chr13 59295111 59295405 -60449493 + AluSx SINE Alu 1 292 -20 706 155 39 136 chr13 59295405 59295473 -60449425 - L1MA8 LINE L1 -159 6132 6059 1601 151 20 7 chr13 59295550 59295855 -60449043 - L1MA8 LINE L1 -244 6047 5739 2732 128 31 8 chr13 59295955 59296542 -60448356 - L1MA8 LINE L1 -544 5747 5152 589 290 14 39 chr13 59296548 59296827 -60448071 + MER93a LTR ERV1 131 402 0 262 258 16 0 chr13 59297742 59297804 -60447094 + MIR3 SINE MIR 139 201 -7 22 35 0 0 chr13 59298876 59298905 -60445993 + AT_rich Low_complexity Low_complexity 1 29 0 261 359 84 21 chr13 59300074 59300216 -60444682 + L2 LINE L2 3122 3272 0 25 31 0 0 chr13 59300259 59300291 -60444607 + AT_rich Low_complexity Low_complexity 1 32 0 243 262 24 48 chr13 59300475 59300559 -60444339 + MIR SINE MIR 111 192 -70 180 338 56 0 chr13 59300971 59301042 -60443856 - L2 LINE L2 -469 2845 2771 561 170 9 0 chr13 59301517 59301623 -60443275 + MLT2B1 LTR ERVL 414 520 0 21 0 0 0 chr13 59301952 59301973 -60442925 + AT_rich Low_complexity Low_complexity 1 21 0 1825 163 0 13 chr13 59302063 59302363 -60442535 - AluSx SINE Alu -16 296 1 2017 107 45 63 chr13 59302758 59303140 -60441758 - THE1C LTR MaLR 0 375 1 1307 189 21 104 chr13 59303625 59304001 -60440897 + MLT1A1 LTR MaLR 21 365 0 1331 277 68 34 chr13 59304008 59304535 -60440363 - MLT1H LTR MaLR -2 547 3 987 270 93 59 chr13 59305882 59306375 -60438523 - MLT1H LTR MaLR 0 549 40 1508 221 36 36 chr13 59307166 59307609 -60437289 + MLT1C LTR MaLR 1 443 -24 1247 224 156 32 chr13 59307639 59308109 -60436789 - MER34 LTR ERV1 0 542 24 360 0 0 0 chr13 59309105 59309145 -60435753 + (CA)n Simple_repeat Simple_repeat 2 41 0 395 298 216 18 chr13 59309170 59309388 -60435510 + MIR SINE MIR 1 261 -1 27 0 0 0 chr13 59310003 59310030 -60434868 + AT_rich Low_complexity Low_complexity 1 27 0 2121 119 0 3 chr13 59310133 59310418 -60434480 - AluSc SINE Alu -25 284 1 401 318 101 0 chr13 59310792 59310981 -60433917 + MLT1I LTR MaLR 11 218 -191 561 303 29 19 chr13 59311441 59311649 -60433249 + MLT1I LTR MaLR 198 407 -2 23 33 0 0 chr13 59311810 59311840 -60433058 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr13 59312114 59312156 -60432742 + AT_rich Low_complexity Low_complexity 1 42 0 225 242 48 0 chr13 59312378 59312440 -60432458 - L2 LINE L2 -213 3059 2995 335 87 0 0 chr13 59312513 59312559 -60432339 + MADE1 DNA Mariner 34 79 -1 303 127 0 0 chr13 59313830 59313893 -60431005 + (A)n Simple_repeat Simple_repeat 1 63 0 210 258 96 39 chr13 59313905 59314050 -60430848 + MIR SINE MIR 37 189 -73 1951 130 3 17 chr13 59314063 59314423 -60430475 + AluSx SINE Alu 1 356 0 188 117 0 67 chr13 59318403 59318435 -60426463 + (A)n Simple_repeat Simple_repeat 1 29 -27 1972 62 0 0 chr13 59318435 59318676 -60426222 + AluY SINE Alu 1 241 -70 188 117 0 67 chr13 59318676 59318703 -60426195 + (A)n Simple_repeat Simple_repeat 29 56 0 244 246 18 0 chr13 59320296 59320353 -60424545 - L2 LINE L2 -4 3268 3211 2532 83 3 0 chr13 59320572 59320920 -60423978 + L1PA13 LINE L1 5814 6162 -1 3011 149 19 2 chr13 59320920 59321445 -60423453 + L1 LINE L1 4406 4939 -1207 25 31 0 0 chr13 59322423 59322455 -60422443 + AT_rich Low_complexity Low_complexity 1 32 0 527 209 31 118 chr13 59322807 59323061 -60421837 - L1MC4 LINE L1 -1 8041 7810 605 220 254 48 chr13 59323140 59323408 -60421490 - MER5C DNA MER1_type 0 324 2 1824 274 71 40 chr13 59323484 59324382 -60420516 - L1MC4 LINE L1 -408 7634 6644 1424 267 31 29 chr13 59325419 59326013 -60418885 + L1MD2 LINE L1 4 484 -5561 2934 239 101 14 chr13 59326066 59327065 -60417833 + L1MD2 LINE L1 3536 4621 -1943 2007 214 47 26 chr13 59327065 59327824 -60417074 - L1ME LINE L1 -539 5627 4853 4035 208 24 8 chr13 59328220 59329084 -60415814 + L1MD2 LINE L1 5870 6747 -30 180 309 0 18 chr13 59329198 59329253 -60415645 + MIR SINE MIR 196 249 -13 629 263 90 64 chr13 59329312 59329669 -60415229 + L2 LINE L2 2936 3301 -12 1846 160 39 21 chr13 59330779 59331110 -60413788 + MER1B DNA MER1_type 1 337 0 2972 198 30 27 chr13 59331198 59331859 -60413039 - LTR8A LTR ERV1 0 727 65 * 3087 198 65 12 chr13 59331854 59332546 -60412352 - MER50 LTR ERV1 -5 729 1 503 123 0 12 chr13 59332546 59332625 -60412273 - LTR8A LTR ERV1 -649 78 1 621 242 31 31 chr13 59333091 59333252 -60411646 + MER45A DNA AcHobo 18 178 0 2756 7 0 0 chr13 59333385 59333686 -60411212 + AluYa5 SINE Alu 1 301 -10 2122 121 0 3 chr13 59333772 59334062 -60410836 + AluSx SINE Alu 1 289 -23 370 339 71 52 chr13 59334198 59334898 -60410000 + HAL1b LINE L1 517 1125 -641 2770 155 54 29 chr13 59335273 59335904 -60408994 + LTR48B LTR ERV1 1 704 -3 301 295 48 17 chr13 59336666 59336893 -60408005 + L1M4 LINE L1 3804 4047 -2099 2229 121 3 0 chr13 59337446 59337752 -60407146 + AluSq SINE Alu 2 308 -5 3725 150 16 0 chr13 59337808 59338422 -60406476 + MER41B LTR ERV1 4 627 -8 1736 154 7 4 chr13 59338616 59338895 -60406003 + AluJb SINE Alu 1 280 -32 26 30 0 0 chr13 59339046 59339079 -60405819 + AT_rich Low_complexity Low_complexity 1 33 0 278 299 47 0 chr13 59339822 59339949 -60404949 + L1ME LINE L1 5734 5866 -255 2962 97 41 47 chr13 59340066 59340686 -60404212 - MER4B LTR ERV1 0 779 15 2050 131 26 7 chr13 59340686 59340992 -60403906 - AluSx SINE Alu 0 312 1 2962 97 41 47 chr13 59340992 59341007 -60403891 - MER4B LTR ERV1 -764 15 1 1506 184 41 4 chr13 59341835 59342102 -60402796 + AluJb SINE Alu 3 279 -33 446 198 103 0 chr13 59342207 59342323 -60402575 + L1MC4 LINE L1 6922 7049 -993 1221 252 170 28 chr13 59342364 59342939 -60401959 + L1MC4 LINE L1 7242 7898 -144 1360 132 0 10 chr13 59343071 59343276 -60401622 + AluSx SINE Alu 5 207 -105 234 0 0 0 chr13 59344174 59344200 -60400698 + (A)n Simple_repeat Simple_repeat 1 26 0 443 269 101 71 chr13 59344929 59345332 -60399566 + MLT1K LTR MaLR 146 588 0 408 40 0 0 chr13 59345368 59345418 -60399480 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 36 0 0 chr13 59345417 59345445 -60399453 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2026 109 0 4 chr13 59345446 59345721 -60399177 - AluSc SINE Alu -35 274 1 849 202 44 20 chr13 59345721 59345924 -60398974 + MER21B LTR ERV1 641 848 -15 383 318 60 7 chr13 59346044 59346195 -60398703 - MIR SINE MIR -72 190 32 180 352 39 16 chr13 59346689 59346817 -60398081 - L2 LINE L2 -5 3267 3137 344 256 186 26 chr13 59347117 59347273 -60397625 + MER5A DNA MER1_type 9 189 0 386 117 17 0 chr13 59347438 59347498 -60397400 + U7 snRNA snRNA 1 61 -2 189 178 0 0 chr13 59348431 59348476 -60396422 + (TG)n Simple_repeat Simple_repeat 2 46 0 229 323 134 55 chr13 59349096 59349313 -60395585 - L2 LINE L2 -2 3270 3037 1071 231 49 0 chr13 59349652 59349877 -60395021 + MIR SINE MIR 23 258 -4 2755 109 14 32 chr13 59350051 59350510 -60394388 + MLT2A1 LTR ERVL 3 443 -10 925 176 1 6 chr13 59350753 59351559 -60393339 - BSR/Beta Satellite Satellite 0 802 1 * 1399 122 0 4 chr13 59351554 59351783 -60393115 + LSAU Satellite Satellite 1 228 -270 2483 81 7 0 chr13 59352129 59352437 -60392461 + AluSg SINE Alu 1 310 0 386 70 0 35 chr13 59352525 59352582 -60392316 - HAL1 LINE L1 -10 2497 2443 245 167 0 67 chr13 59352599 59352659 -60392239 - L1PA16 LINE L1 -23 6143 6088 * 11045 200 60 13 chr13 59352653 59357197 -60387701 + L1PB1 LINE L1 6 5189 -1678 333 0 0 0 chr13 59357197 59357234 -60387664 + (CA)n Simple_repeat Simple_repeat 2 38 0 11045 200 60 13 chr13 59357234 59358997 -60385901 + L1PB1 LINE L1 5189 6867 0 4755 131 11 5 chr13 59359025 59359817 -60385081 - L1PA16 LINE L1 -55 6111 5315 575 264 98 39 chr13 59359832 59360115 -60384783 - HAL1 LINE L1 -111 2396 2074 2438 64 0 16 chr13 59360115 59360429 -60384469 - AluY SINE Alu -2 309 1 575 264 98 39 chr13 59360429 59360604 -60384294 - HAL1 LINE L1 -433 2074 1911 12628 190 49 81 chr13 59360635 59360882 -60384016 - L1MA6 LINE L1 -2 7319 7066 2193 139 0 0 chr13 59360882 59361191 -60383707 + AluSx SINE Alu 1 309 -3 12628 190 49 81 chr13 59361191 59362548 -60382350 - L1MA6 LINE L1 -255 7066 5667 1903 113 0 4 chr13 59362548 59362796 -60382102 + AluSx SINE Alu 61 307 -5 12628 190 49 81 chr13 59362796 59365125 -60379773 - L1MA6 LINE L1 -1654 5667 3264 1942 180 0 0 chr13 59365125 59365425 -60379473 - AluJb SINE Alu -12 300 1 12628 190 49 81 chr13 59365425 59366713 -60378185 - L1MA6 LINE L1 -4057 3264 1936 2372 90 3 3 chr13 59366713 59367023 -60377875 + AluY SINE Alu 1 310 -1 12628 190 49 81 chr13 59367023 59369332 -60375566 - L1MA6 LINE L1 -5385 1936 4 2303 88 0 0 chr13 59369482 59369778 -60375120 - AluY SINE Alu -15 296 1 436 284 196 0 chr13 59369847 59370097 -60374801 - HAL1 LINE L1 -736 1771 1473 901 219 10 5 chr13 59370103 59370295 -60374603 + MER58A DNA MER1_type 1 193 -31 253 224 219 45 chr13 59370350 59370551 -60374347 - HAL1 LINE L1 -1044 1463 1228 1087 261 96 30 chr13 59370705 59371238 -60373660 - HAL1 LINE L1 -1478 1029 462 240 224 40 13 chr13 59371788 59371864 -60373034 - HAL1 LINE L1 -2131 376 299 444 230 146 38 chr13 59371869 59372082 -60372816 - HAL1 LINE L1 -2251 256 21 429 311 186 29 chr13 59372129 59372473 -60372425 + L2 LINE L2 2811 3208 -105 217 186 23 0 chr13 59372750 59372793 -60372105 + T-rich Low_complexity Low_complexity 3 46 0 547 130 9 9 chr13 59372793 59372908 -60371990 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 26 30 0 0 chr13 59373372 59373405 -60371493 + AT_rich Low_complexity Low_complexity 1 33 0 255 266 190 0 chr13 59373651 59373730 -60371168 + MIR3 SINE MIR 105 198 -10 193 208 42 21 chr13 59374593 59374641 -60370257 + L2 LINE L2 3216 3264 -8 1912 155 39 3 chr13 59374943 59375278 -60369620 + MER7A DNA MER2_type 2 346 0 543 244 128 6 chr13 59375740 59375920 -60368978 + MIR SINE MIR 49 250 -12 9516 158 45 11 chr13 59377292 59379821 -60365077 + L1M1 LINE L1 11 2681 -4884 2486 86 0 0 chr13 59379821 59380124 -60364774 + AluSc SINE Alu 1 303 -6 9516 158 45 11 chr13 59380124 59380142 -60364756 + L1M1 LINE L1 2681 2697 -4868 2337 115 20 20 chr13 59380142 59380532 -60364366 + L1MA2 LINE L1 5915 6304 0 207 356 22 0 chr13 59380858 59380948 -60363950 - MIR SINE MIR -111 151 60 1647 174 53 3 chr13 59381105 59381387 -60363511 + AluSx SINE Alu 4 299 -13 193 215 13 13 chr13 59382253 59382332 -60362566 + GA-rich Low_complexity Low_complexity 5 83 0 449 262 6 92 chr13 59384974 59385138 -60359760 - MER5B DNA MER1_type 0 178 29 238 315 72 18 chr13 59385264 59385375 -60359523 - L2 LINE L2 0 3313 3197 1511 167 117 0 chr13 59385518 59385782 -60359116 - AluJb SINE Alu -17 295 1 265 280 75 19 chr13 59385826 59385933 -60358965 + MLT1H LTR MaLR 50 162 -387 245 201 42 146 chr13 59386106 59386250 -60358648 + MLT1H LTR MaLR 421 549 0 294 313 24 0 chr13 59386301 59386384 -60358514 + L2 LINE L2 3184 3268 -4 187 433 37 15 chr13 59386350 59386484 -60358414 - L2 LINE L2 -50 3222 3086 * 335 224 119 45 chr13 59387362 59387496 -60357402 - HAL1 LINE L1 -2363 144 1 419 300 34 9 chr13 59387503 59387736 -60357162 + L1ME4a LINE L1 5710 5948 -173 192 422 0 0 chr13 59388799 59388889 -60356009 - L2 LINE L2 -397 2916 2827 336 295 85 39 chr13 59389324 59389453 -60355445 + L2 LINE L2 3134 3268 -4 1590 251 36 9 chr13 59389453 59389920 -60354978 + L1MC4 LINE L1 6830 7309 -733 634 242 107 46 chr13 59390010 59390337 -60354561 + L1MC4 LINE L1 7692 8038 -4 2310 100 3 0 chr13 59390601 59390902 -60353996 + AluSc SINE Alu 1 302 -7 1998 129 5 58 chr13 59390993 59391172 -60353726 + MER46B DNA MER2_type 2 189 -2542 914 128 0 0 chr13 59391172 59391305 -60353593 + FLAM_C SINE Alu 1 133 0 1998 129 5 58 chr13 59391305 59391316 -60353582 + MER46B DNA MER2_type 189 199 -2532 2302 100 0 29 chr13 59391316 59391626 -60353272 + AluSg SINE Alu 2 302 -8 1998 129 5 58 chr13 59391626 59391814 -60353084 + MER46B DNA MER2_type 199 236 0 234 0 0 0 chr13 59392941 59392967 -60351931 + (A)n Simple_repeat Simple_repeat 1 26 0 526 155 6 138 chr13 59393345 59393519 -60351379 - MLT2C2 LTR ERVL 0 397 247 5336 154 27 12 chr13 59393542 59394717 -60350181 - L1MA8 LINE L1 -1 6290 5098 1396 162 4 15 chr13 59394717 59394983 -60349915 - MLT2C2 LTR ERVL -201 263 1 301 284 71 10 chr13 59395058 59395225 -60349673 - L1ME LINE L1 -397 5765 5575 1989 113 6 35 chr13 59395225 59395536 -60349362 + AluSx SINE Alu 1 302 -10 301 284 71 10 chr13 59395536 59395563 -60349335 - L1ME LINE L1 -587 5575 5551 448 283 87 70 chr13 59395781 59396011 -60348887 - L2 LINE L2 0 3272 3039 1241 193 65 38 chr13 59396200 59396563 -60348335 + MLT2B1 LTR ERVL 4 374 -40 363 60 0 0 chr13 59396563 59396613 -60348285 + (TG)n Simple_repeat Simple_repeat 2 51 0 1241 193 65 38 chr13 59396613 59396656 -60348242 + MLT2B1 LTR ERVL 374 414 0 712 251 116 20 chr13 59397902 59398024 -60346874 + HAL1 LINE L1 769 878 -1629 186 43 0 0 chr13 59398024 59398047 -60346851 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 712 251 116 20 chr13 59398047 59398278 -60346620 + HAL1 LINE L1 878 1156 -1351 328 226 98 45 chr13 59398429 59398562 -60346336 + HAL1 LINE L1 1667 1806 -701 544 240 140 69 chr13 59398624 59399103 -60345795 + HAL1 LINE L1 1995 2507 0 366 237 0 10 chr13 59399112 59399209 -60345689 - L1ME LINE L1 -425 5696 5601 7252 44 1 9 chr13 59399334 59400295 -60344603 + L1PA6 LINE L1 5201 6154 0 23 68 0 0 chr13 59400396 59400440 -60344458 + AT_rich Low_complexity Low_complexity 1 44 0 4958 131 53 2 chr13 59400498 59401306 -60343592 - HUERS-P3b LTR ERV1 -331 7087 6239 180 0 0 0 chr13 59401308 59401328 -60343570 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1440 218 77 10 chr13 59401379 59401769 -60343129 - LTR52 LTR ERVL -3 418 3 180 97 0 0 chr13 59402831 59402862 -60342036 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 1785 60 4 0 chr13 59402862 59403097 -60341801 - LTR17 LTR ERV1 -455 325 90 377 289 132 19 chr13 59405157 59405316 -60339582 + MIR3 SINE MIR 30 206 -2 2283 87 3 0 chr13 59406348 59406634 -60338264 - AluSc SINE Alu -22 287 1 359 21 21 0 chr13 59407099 59407147 -60337751 + (CA)n Simple_repeat Simple_repeat 2 50 0 432 319 19 12 chr13 59407155 59407315 -60337583 - MIR SINE MIR -10 252 92 215 289 0 0 chr13 59408254 59408299 -60336599 + MER5B DNA MER1_type 5 49 -129 2318 237 85 7 chr13 59408312 59409026 -60335872 - L1MC4a LINE L1 0 7808 7039 196 283 0 17 chr13 59409026 59409086 -60335812 + MER5B DNA MER1_type 37 95 -83 269 353 33 49 chr13 59409109 59409293 -60335605 - MIR SINE MIR -79 183 3 198 0 0 0 chr13 59409541 59409563 -60335335 + (CA)n Simple_repeat Simple_repeat 1 22 0 314 286 92 8 chr13 59409690 59409809 -60335089 + MIR SINE MIR 13 141 -121 325 280 59 59 chr13 59410214 59410332 -60334566 + L2 LINE L2 3196 3313 0 603 254 99 17 chr13 59410960 59411141 -60333757 + MLT1J LTR MaLR 253 448 -63 2352 91 0 0 chr13 59411302 59411598 -60333300 - AluSc SINE Alu -13 296 1 831 322 37 7 chr13 59411756 59412054 -60332844 - L3 LINE CR1 -14 1563 1257 1619 178 50 0 chr13 59414020 59414340 -60330558 - L1 LINE L1 -1831 4315 3980 1887 191 20 0 chr13 59414342 59414699 -60330199 + L1PA16 LINE L1 5798 6161 -5 210 294 0 0 chr13 59414766 59414817 -60330081 + MIR SINE MIR 99 149 -59 191 318 0 30 chr13 59415953 59416019 -60328879 - MIR SINE MIR -113 149 86 3012 213 76 58 chr13 59416197 59416769 -60328129 + L1MCb LINE L1 3 563 -5769 228 35 0 0 chr13 59416769 59416798 -60328100 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3012 213 76 58 chr13 59416798 59417693 -60327205 + L1MCb LINE L1 563 1480 -4852 210 118 0 0 chr13 59418811 59418845 -60326053 + (TG)n Simple_repeat Simple_repeat 1 34 0 224 307 0 4 chr13 59419749 59419839 -60325059 - MIR SINE MIR -63 145 59 220 100 20 40 chr13 59419933 59419983 -60324915 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1830 143 0 54 chr13 59422939 59423253 -60321645 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr13 59423263 59423285 -60321613 + AT_rich Low_complexity Low_complexity 1 22 0 2502 69 0 0 chr13 59424513 59424816 -60320082 + AluY SINE Alu 1 303 -8 347 302 26 38 chr13 59425658 59425851 -60319047 - L2 LINE L2 -298 2974 2772 421 365 147 16 chr13 59425873 59426424 -60318474 - L2 LINE L2 -686 2628 2006 550 165 0 0 chr13 59426502 59426587 -60318311 - AluJ/FLAM SINE Alu -227 85 1 440 299 29 15 chr13 59427106 59427281 -60317617 + MIR SINE MIR 39 214 -48 897 194 104 15 chr13 59427288 59427489 -60317409 + MER20 DNA MER1_type 1 219 0 395 260 114 0 chr13 59427563 59427686 -60317212 - MIR SINE MIR -70 192 56 388 341 74 6 chr13 59428455 59428631 -60316267 + MIR SINE MIR 2 189 -73 2531 303 120 17 chr13 59428650 59429032 -60315866 - L2 LINE L2 -32 3281 2940 1665 145 0 0 chr13 59429032 59429274 -60315624 + AluSx SINE Alu 58 299 -13 2531 303 120 17 chr13 59429274 59430225 -60314673 - L2 LINE L2 -373 2940 1808 2847 91 0 0 chr13 59430650 59431025 -60313873 + THE1C LTR MaLR 1 375 0 190 318 218 9 chr13 59431340 59431450 -60313448 - L2 LINE L2 -3 3269 3137 24 0 0 0 chr13 59431468 59431492 -60313406 + AT_rich Low_complexity Low_complexity 1 24 0 1040 179 0 34 chr13 59431539 59431718 -60313180 + FAM SINE Alu 1 173 -2 29297 111 13 59 chr13 59432669 59439117 -60305781 + L1PA7 LINE L1 12 6154 0 213 311 133 44 chr13 59439557 59439782 -60305116 + L2 LINE L2 2458 2702 -612 357 216 27 0 chr13 59439825 59439899 -60304999 - MER2 DNA MER2_type 0 345 270 447 101 38 0 chr13 59439928 59440007 -60304891 - MER2 DNA MER2_type -135 210 129 1943 139 69 74 chr13 59440010 59440259 -60304639 - Tigger2a DNA MER2_type -2277 431 183 691 195 0 8 chr13 59440259 59440382 -60304516 - FLAM_A SINE Alu -11 122 1 1943 139 69 74 chr13 59440382 59440565 -60304333 - Tigger2a DNA MER2_type -2525 183 1 701 200 15 0 chr13 59440565 59440694 -60304204 - MER2 DNA MER2_type -214 131 1 4820 139 25 18 chr13 59441131 59441915 -60302983 + MER54B LTR ERVL 3 792 -1 1141 272 83 23 chr13 59442175 59442561 -60302337 - L2 LINE L2 -3 3310 2902 267 352 41 38 chr13 59442869 59443136 -60301762 + L2 LINE L2 636 903 -2411 253 345 79 0 chr13 59443168 59443307 -60301591 + MIR SINE MIR 7 156 -106 23 0 0 0 chr13 59443611 59443634 -60301264 + AT_rich Low_complexity Low_complexity 1 23 0 401 307 89 61 chr13 59443827 59444153 -60300745 + L2 LINE L2 1562 1896 -1418 4278 161 51 1 chr13 59444240 59445048 -60299850 - L1MB7 LINE L1 0 6184 5337 336 319 232 8 chr13 59445061 59445302 -60299596 + L2 LINE L2 2025 2319 -995 496 221 39 77 chr13 59445842 59446023 -60298875 + MER5B DNA MER1_type 4 177 -1 336 299 43 24 chr13 59446181 59446345 -60298553 + LTR67 LTR ERVL 391 557 0 275 328 49 16 chr13 59446360 59446482 -60298416 + L2 LINE L2 2711 2836 -478 317 277 99 75 chr13 59446495 59446708 -60298190 + L1MC/D LINE L1 5582 5799 -2009 259 132 0 0 chr13 59447057 59447095 -60297803 - Charlie3 DNA MER1_type -2636 74 37 * 1763 162 0 29 chr13 59447071 59447385 -60297513 + MER1B DNA MER1_type 35 339 0 237 333 20 10 chr13 59447867 59447966 -60296932 - MIR SINE MIR -115 147 48 2458 99 16 19 chr13 59448358 59448733 -60296165 - THE1C LTR MaLR -1 374 1 9400 113 65 45 chr13 59448733 59450281 -60294617 - THE1C-int LTR MaLR 0 1580 3 2409 118 19 16 chr13 59450283 59450656 -60294242 - THE1C LTR MaLR 0 375 2 257 239 87 43 chr13 59450976 59451114 -60293784 + L1MC/D LINE L1 5679 5822 -1986 2163 128 3 0 chr13 59451227 59451531 -60293367 - AluSx SINE Alu -7 305 1 3568 156 10 3 chr13 59451571 59452172 -60292726 - MER6A DNA MER2_type 0 605 1 388 294 0 0 chr13 59453018 59453110 -60291788 - MIR SINE MIR -108 154 63 253 258 22 11 chr13 59453203 59453292 -60291606 - MER5B DNA MER1_type 0 178 89 236 358 193 22 chr13 59453347 59453740 -60291158 - L2 LINE L2 -919 2395 2071 181 0 0 65 chr13 59453740 59453771 -60291127 + (CAA)n Simple_repeat Simple_repeat 2 30 0 236 358 193 22 chr13 59453771 59453967 -60290931 - L2 LINE L2 -1243 2071 1705 2205 128 3 0 chr13 59454785 59455090 -60289808 + AluSx SINE Alu 1 306 -6 969 345 141 39 chr13 59455119 59455448 -60289450 + L2 LINE L2 1359 1653 -1661 2270 67 0 44 chr13 59455448 59455764 -60289134 + AluY SINE Alu 8 309 -2 969 345 141 39 chr13 59455764 59456633 -60288265 + L2 LINE L2 1653 2724 -590 1615 153 0 15 chr13 59456633 59456895 -60288003 - AluSx SINE Alu -54 258 1 969 345 141 39 chr13 59456895 59457099 -60287799 + L2 LINE L2 2724 2906 -408 278 26 26 0 chr13 59457099 59457138 -60287760 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 351 266 55 0 chr13 59457738 59457847 -60287051 + L2 LINE L2 3199 3313 0 353 359 48 55 chr13 59458066 59458153 -60286745 + L2 LINE L2 2985 3071 -201 288 0 0 0 chr13 59458153 59458185 -60286713 + (CA)n Simple_repeat Simple_repeat 2 33 0 353 359 48 55 chr13 59458185 59458387 -60286511 + L2 LINE L2 3071 3272 0 213 235 0 0 chr13 59460367 59460418 -60284480 + (TA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr13 59460981 59461003 -60283895 + AT_rich Low_complexity Low_complexity 1 22 0 200 273 0 36 chr13 59462813 59462868 -60282030 + MIR SINE MIR 204 256 -6 302 317 39 50 chr13 59463280 59463460 -60281438 + L3 LINE CR1 919 1096 -481 356 289 175 36 chr13 59464112 59464306 -60280592 - MIR SINE MIR -16 246 26 21 36 0 0 chr13 59464724 59464752 -60280146 + AT_rich Low_complexity Low_complexity 1 28 0 2009 133 0 0 chr13 59465565 59465888 -60279010 + AluSc SINE Alu 1 323 0 2687 97 5 20 chr13 59466034 59466437 -60278461 + L1PA12 LINE L1 5757 6153 -15 357 43 0 0 chr13 59466442 59466489 -60278409 + (CA)n Simple_repeat Simple_repeat 2 48 0 320 243 112 9 chr13 59466640 59466747 -60278151 + MIR SINE MIR 32 149 -113 2127 136 0 3 chr13 59466845 59467155 -60277743 - AluSc SINE Alu 0 309 1 584 239 62 17 chr13 59467977 59468153 -60276745 - L2 LINE L2 0 3313 3130 418 272 131 11 chr13 59468192 59468515 -60276383 + LTR16C LTR ERVL 71 477 -14 720 275 128 63 chr13 59468528 59468558 -60276340 - L2 LINE L2 -144 3169 3142 2326 88 10 0 chr13 59468558 59468854 -60276044 + AluSg SINE Alu 1 299 -11 720 275 128 63 chr13 59468854 59469369 -60275529 - L2 LINE L2 -171 3142 2600 1764 181 0 7 chr13 59469457 59469749 -60275149 + AluJb SINE Alu 1 290 -22 467 234 25 106 chr13 59469865 59470100 -60274798 - MER112 DNA MER1_type -41 219 4 1801 165 93 5 chr13 59470112 59470500 -60274398 + L1MB5 LINE L1 5747 6168 -6 1115 268 90 0 chr13 59470520 59470795 -60274103 - L2 LINE L2 -706 2608 2297 2043 149 49 3 chr13 59470795 59471143 -60273755 - MLT1A1 LTR MaLR 0 365 2 1115 268 90 0 chr13 59471143 59471199 -60273699 - L2 LINE L2 -1017 2297 2247 23 33 0 0 chr13 59471487 59471517 -60273381 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 59472323 59472344 -60272554 + AT_rich Low_complexity Low_complexity 1 21 0 232 164 182 0 chr13 59472975 59473030 -60271868 - L1ME4a LINE L1 -80 6041 5977 462 101 0 0 chr13 59473086 59473155 -60271743 + (TG)n Simple_repeat Simple_repeat 2 70 0 801 184 7 0 chr13 59473181 59473317 -60271581 + FRAM SINE Alu 33 169 -7 1194 129 67 5 chr13 59473370 59473594 -60271304 - L1MB1 LINE L1 -7 6161 5924 371 282 34 0 chr13 59473626 59473775 -60271123 - L1ME4a LINE L1 -251 5870 5717 784 290 79 28 chr13 59473781 59474247 -60270651 - Tigger8 DNA MER2_type -18 648 159 198 103 0 0 chr13 59474692 59474721 -60270177 + (A)n Simple_repeat Simple_repeat 1 29 0 346 172 280 11 chr13 59474727 59474820 -60270078 + L2 LINE L2 3191 3308 -5 198 103 0 0 chr13 59474840 59474869 -60270029 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 618 277 40 33 chr13 59474884 59475158 -60269740 - MARNA DNA Mariner -268 318 43 524 276 153 18 chr13 59475360 59475588 -60269310 - MIR SINE MIR -2 260 2 2491 152 50 76 chr13 59475829 59476279 -60268619 + L1MA7 LINE L1 5688 6152 -139 257 30 0 0 chr13 59476279 59476312 -60268586 + U2 snRNA snRNA 1 33 -155 2491 152 50 76 chr13 59476312 59476449 -60268449 + L1MA7 LINE L1 6152 6291 0 183 42 0 0 chr13 59477583 59477607 -60267291 + (CA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr13 59477659 59477680 -60267218 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 209 139 23 0 chr13 59478767 59478810 -60266088 + (CA)n Simple_repeat Simple_repeat 2 45 0 1157 126 51 0 chr13 59479681 59479856 -60265042 + AluSq SINE Alu 119 302 -11 295 326 183 11 chr13 59480007 59480182 -60264716 - MIR SINE MIR -32 230 26 263 314 0 0 chr13 59480383 59480453 -60264445 + L2 LINE L2 3197 3266 -6 295 188 0 0 chr13 59480685 59480733 -60264165 + L2 LINE L2 3223 3270 -2 366 243 243 21 chr13 59480827 59480971 -60263927 + MER5A DNA MER1_type 13 188 -1 429 318 70 45 chr13 59481348 59481549 -60263349 + MIR SINE MIR 11 216 -46 259 223 256 41 chr13 59481899 59482020 -60262878 + MIR SINE MIR 15 161 -101 1970 133 4 4 chr13 59482210 59482538 -60262360 + AluSg SINE Alu 1 328 0 2211 101 6 25 chr13 59482538 59482856 -60262042 + AluSp SINE Alu 1 312 -1 215 314 109 39 chr13 59486565 59486721 -60258177 + MIR SINE MIR 20 186 -76 1427 190 13 40 chr13 59487032 59487332 -60257566 + AluJo SINE Alu 12 303 -9 917 158 31 72 chr13 59487640 59487862 -60257036 - MER20 DNA MER1_type -4 215 3 2610 161 4 25 chr13 59488145 59488635 -60256263 - MER66B LTR ERV1 -1 485 6 22 35 0 0 chr13 59489024 59489053 -60255845 + AT_rich Low_complexity Low_complexity 1 29 0 2091 117 3 0 chr13 59489299 59489582 -60255316 + AluSx SINE Alu 2 285 -27 204 40 0 0 chr13 59489585 59489610 -60255288 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 317 349 41 14 chr13 59491422 59491568 -60253330 - MER5A DNA MER1_type -39 150 1 414 269 61 66 chr13 59492000 59492212 -60252686 + MIR SINE MIR 2 212 -50 480 284 134 40 chr13 59492443 59492919 -60251979 + LTR33 LTR ERVL 1 521 0 2194 130 0 0 chr13 59495145 59495453 -60249445 + AluSx SINE Alu 5 312 0 341 296 98 61 chr13 59495495 59495772 -60249126 + L2 LINE L2 2569 2855 -459 699 233 52 9 chr13 59495806 59496038 -60248860 - L1MD3 LINE L1 0 7995 7754 564 299 96 52 chr13 59496114 59496312 -60248586 + L2 LINE L2 2934 3122 -191 1813 121 80 52 chr13 59496312 59496676 -60248222 + THE1C LTR MaLR 2 375 0 564 299 96 52 chr13 59496676 59496841 -60248057 + L2 LINE L2 3122 3313 0 222 260 0 0 chr13 59497032 59497082 -60247816 - L2 LINE L2 -1 3271 3222 1968 198 28 24 chr13 59497946 59498500 -60246398 + MLT1F1 LTR MaLR 1 567 0 2387 88 3 0 chr13 59498738 59499034 -60245864 - AluSp SINE Alu -16 297 1 462 294 99 38 chr13 59499236 59499529 -60245369 - LTR16A1 LTR ERVL 0 457 147 233 281 0 0 chr13 59500555 59500612 -60244286 + GA-rich Low_complexity Low_complexity 4 60 0 2283 101 3 3 chr13 59500814 59501111 -60243787 - AluSp SINE Alu -16 297 1 220 370 87 16 chr13 59501319 59501446 -60243452 - MIR3 SINE MIR -64 144 9 1550 204 112 22 chr13 59501475 59501877 -60243021 - MER74C LTR ERVL -7 453 16 346 345 81 0 chr13 59502005 59502153 -60242745 + MIR SINE MIR 47 206 -56 1723 50 129 0 chr13 59502853 59503093 -60241805 - AluY SINE Alu -38 273 3 2039 146 10 0 chr13 59503362 59503670 -60241228 - AluSx SINE Alu -1 311 1 382 295 9 0 chr13 59503945 59504057 -60240841 - MLT1L LTR MaLR -369 246 134 222 362 69 0 chr13 59504167 59504283 -60240615 - MIR SINE MIR -45 217 94 209 310 56 0 chr13 59506316 59506387 -60238511 - MIR SINE MIR -175 87 13 1588 115 45 0 chr13 59506591 59506860 -60238038 - L1MA5A LINE L1 -3 6294 6014 530 266 100 48 chr13 59506897 59507126 -60237772 - MIR SINE MIR 0 262 22 2289 112 0 0 chr13 59507862 59508166 -60236732 + AluSg SINE Alu 1 304 -6 21 71 0 0 chr13 59508350 59508392 -60236506 + AT_rich Low_complexity Low_complexity 1 42 0 302 293 20 20 chr13 59509264 59509363 -60235535 + MIR3 SINE MIR 64 162 -46 22 35 0 0 chr13 59509554 59509583 -60235315 + AT_rich Low_complexity Low_complexity 1 29 0 247 246 18 0 chr13 59509807 59509864 -60235034 + GA-rich Low_complexity Low_complexity 3 60 0 218 178 22 0 chr13 59510619 59510664 -60234234 - L2 LINE L2 0 3313 3268 858 219 0 22 chr13 59511304 59511482 -60233416 - FAM SINE Alu -1 174 1 2437 72 0 13 chr13 59511522 59511828 -60233070 + AluY SINE Alu 1 302 -9 1571 238 52 33 chr13 59512655 59513098 -60231800 + MER77 LTR ERV1 62 516 -89 1882 135 48 58 chr13 59513098 59513274 -60231624 + THE1C LTR MaLR 1 177 -198 2189 135 0 0 chr13 59513274 59513578 -60231320 + AluSq SINE Alu 2 305 -8 1882 135 48 58 chr13 59513578 59513780 -60231118 + THE1C LTR MaLR 177 375 0 1571 238 52 33 chr13 59513780 59513820 -60231078 + MER77 LTR ERV1 516 554 -51 521 316 9 33 chr13 59514800 59515012 -60229886 - MIR SINE MIR -8 254 48 297 296 92 0 chr13 59515397 59515495 -60229403 - L2 LINE L2 -10 3262 3156 220 323 0 0 chr13 59515725 59515787 -60229111 + (CA)n Simple_repeat Simple_repeat 1 62 0 1614 179 25 47 chr13 59517209 59517398 -60227500 - AluJb SINE Alu 0 312 131 2069 120 3 43 chr13 59517398 59517722 -60227176 - AluSq SINE Alu -2 311 1 1614 179 25 47 chr13 59517722 59517851 -60227047 - AluJb SINE Alu -181 131 1 1046 244 4 8 chr13 59517893 59518143 -60226755 - MER87 LTR ERV1 0 541 293 13098 124 15 28 chr13 59518165 59521461 -60223437 + L1P3 LINE L1 8 3337 -3124 7050 47 4 14 chr13 59521461 59522397 -60222501 + L1PA7 LINE L1 4429 5351 -803 2211 114 7 0 chr13 59522397 59522696 -60222202 + AluY SINE Alu 1 301 -10 7050 47 4 14 chr13 59522696 59523493 -60221405 + L1PA7 LINE L1 5351 6154 0 586 235 8 22 chr13 59523504 59523737 -60221161 - MER87 LTR ERV1 -267 274 1 21 0 0 0 chr13 59523953 59523974 -60220924 + AT_rich Low_complexity Low_complexity 1 21 0 537 330 80 0 chr13 59524740 59524964 -60219934 + MIR SINE MIR 13 254 -8 228 254 118 18 chr13 59524966 59525076 -60219822 + L1MC4 LINE L1 6593 6713 -1329 638 162 15 157 chr13 59525094 59525291 -60219607 - FAM SINE Alu -6 169 1 1009 264 60 35 chr13 59525463 59525860 -60219038 + LTR16C LTR ERVL 85 491 0 562 251 145 18 chr13 59526135 59526362 -60218536 - L1MC4 LINE L1 -386 7502 7167 49 43 0 0 chr13 59526424 59526494 -60218404 + AT_rich Low_complexity Low_complexity 1 70 0 1118 254 151 22 chr13 59526645 59527535 -60217363 + L1MC4 LINE L1 6723 7911 -131 297 257 127 55 chr13 59527614 59527654 -60217244 + HAL1 LINE L1 684 720 -1787 2318 120 0 3 chr13 59527654 59527963 -60216935 + AluSx SINE Alu 1 308 -4 297 257 127 55 chr13 59527963 59528175 -60216723 + HAL1 LINE L1 720 954 -1553 775 97 0 0 chr13 59528206 59528320 -60216578 - L1PB1 LINE L1 0 6867 6754 4695 190 4 1 chr13 59528320 59529858 -60215040 - L1PB1 LINE L1 -367 6500 4959 2808 212 36 3 chr13 59529853 59530583 -60214315 - L1PB1 LINE L1 -2878 3984 3231 * 9006 114 121 7 chr13 59530585 59532159 -60212739 - L1PB1 LINE L1 -4477 2386 634 1090 155 5 0 chr13 59532159 59532352 -60212546 - L1PB1 LINE L1 -6663 200 7 355 225 108 17 chr13 59532698 59532818 -60212080 + MIR SINE MIR 123 253 -9 593 262 149 23 chr13 59533015 59533317 -60211581 + LTR50 LTR ERVL 5 344 -451 548 187 313 5 chr13 59533340 59533554 -60211344 + LTR50 LTR ERVL 516 795 0 276 77 0 0 chr13 59534227 59534266 -60210632 + (TG)n Simple_repeat Simple_repeat 2 40 0 212 188 75 0 chr13 59534916 59534996 -60209902 + (ATATG)n Simple_repeat Simple_repeat 4 89 0 1489 180 49 55 chr13 59535884 59536251 -60208647 - MLT1A1 LTR MaLR 0 365 1 409 299 137 64 chr13 59536421 59536444 -60208454 + L2 LINE L2 2761 2781 -532 2155 96 10 3 chr13 59536444 59536737 -60208161 - AluSq SINE Alu -18 295 1 409 299 137 64 chr13 59536737 59536995 -60207903 + L2 LINE L2 2781 3065 -248 2424 82 3 0 chr13 59537287 59537592 -60207306 - AluY SINE Alu -5 306 1 516 300 30 39 chr13 59537880 59538110 -60206788 + MIR SINE MIR 4 231 -31 584 233 102 5 chr13 59538110 59538325 -60206573 + L1MC4a LINE L1 5525 5760 -2048 346 250 29 39 chr13 59538362 59538466 -60206432 - L1MC4 LINE L1 -1326 6716 6614 539 241 138 31 chr13 59538483 59538803 -60206095 + L1MC4a LINE L1 5959 6312 -1496 725 256 81 51 chr13 59538820 59539250 -60205648 + L1MC4 LINE L1 7505 7947 -95 22 35 0 0 chr13 59539988 59540017 -60204881 + AT_rich Low_complexity Low_complexity 1 29 0 639 223 23 0 chr13 59540875 59541005 -60203893 + MIR SINE MIR 62 194 -68 362 356 53 0 chr13 59541220 59541352 -60203546 - MER91C DNA MER1_type 0 140 2 1536 166 3 59 chr13 59541532 59541821 -60203077 + AluJb SINE Alu 40 312 0 908 171 41 5 chr13 59542100 59542416 -60202482 + MLT1B LTR MaLR 3 388 -2 200 59 29 0 chr13 59542695 59542729 -60202169 + (TC)n Simple_repeat Simple_repeat 2 36 0 342 0 0 0 chr13 59542731 59542769 -60202129 + (CA)n Simple_repeat Simple_repeat 2 39 0 210 294 0 0 chr13 59542770 59542821 -60202077 + (TA)n Simple_repeat Simple_repeat 1 51 0 1150 155 16 36 chr13 59542821 59543014 -60201884 - AluJb SINE Alu -33 279 91 723 174 0 0 chr13 59543029 59543144 -60201754 - AluJb SINE Alu -197 115 1 197 333 29 0 chr13 59543796 59543865 -60201033 + MIR SINE MIR 48 118 -90 359 381 40 0 chr13 59544210 59544336 -60200562 - L2 LINE L2 -5 3267 3137 5192 88 34 3 chr13 59544451 59545221 -60199677 + L1MA2 LINE L1 5511 6304 0 1400 231 54 8 chr13 59545251 59545624 -60199274 + MLT1B LTR MaLR 1 390 0 185 205 26 0 chr13 59546094 59546133 -60198765 + L2 LINE L2 3272 3311 -2 1194 183 204 52 chr13 59547184 59547232 -60197666 + MSTD LTR MaLR 1 40 -356 3333 118 4 24 chr13 59547232 59547739 -60197159 - LOR1a LTR ERV1 0 497 1 1194 183 204 52 chr13 59547739 59548034 -60196864 + MSTD LTR MaLR 40 396 0 231 36 0 0 chr13 59548106 59548134 -60196764 + (T)n Simple_repeat Simple_repeat 1 28 0 5735 115 45 0 chr13 59548177 59549115 -60195783 - L1PA14 LINE L1 -4 6157 5197 684 334 58 15 chr13 59549378 59549788 -60195110 - LTR16A LTR ERVL -7 443 16 236 246 35 0 chr13 59550584 59550641 -60194257 - MIR SINE MIR -107 155 97 2327 84 0 44 chr13 59551737 59552057 -60192841 + AluY SINE Alu 1 306 -5 303 253 0 22 chr13 59552324 59552415 -60192483 - MER87 LTR ERV1 -58 483 395 1033 184 42 17 chr13 59552430 59552669 -60192229 - LTR38 LTR ERV1 -160 396 152 225 275 58 0 chr13 59552919 59552988 -60191910 - L2 LINE L2 -65 3248 3176 2375 109 22 27 chr13 59553018 59553384 -60191514 + THE1B LTR MaLR 1 364 0 489 34 0 0 chr13 59553805 59553864 -60191034 + (CATA)n Simple_repeat Simple_repeat 4 62 0 1992 180 18 55 chr13 59553970 59554458 -60190440 + MER31A LTR ERV1 7 476 -9 244 296 173 0 chr13 59554483 59554564 -60190334 + MIR3 SINE MIR 93 187 -21 206 319 33 22 chr13 59554718 59554809 -60190089 + MIR SINE MIR 121 212 -50 915 179 6 28 chr13 59554913 59555105 -60189793 + MER20 DNA MER1_type 4 187 -32 1410 137 9 5 chr13 59555632 59555844 -60189054 + AluJo SINE Alu 1 213 -99 1754 186 7 7 chr13 59556007 59556313 -60188585 - AluJo SINE Alu -6 306 1 186 43 0 0 chr13 59558528 59558551 -60186347 + (T)n Simple_repeat Simple_repeat 1 23 0 1301 81 0 16 chr13 59558572 59558757 -60186141 + L1PA8 LINE L1 5991 6172 0 591 176 8 15 chr13 59559536 59559667 -60185231 + MSTD LTR MaLR 1 130 -266 207 0 0 0 chr13 59560238 59560261 -60184637 + (A)n Simple_repeat Simple_repeat 1 23 0 821 177 0 0 chr13 59560287 59560417 -60184481 + FLAM_A SINE Alu 1 130 -3 377 276 69 55 chr13 59560632 59560777 -60184121 - MIR3 SINE MIR 0 208 62 325 409 0 0 chr13 59560792 59560919 -60183979 + MIR SINE MIR 28 154 -108 1915 134 50 20 chr13 59560976 59561333 -60183565 - THE1C LTR MaLR 0 375 8 2268 126 61 7 chr13 59561366 59561778 -60183120 - Tigger2 DNA MER2_type 0 2718 2285 335 146 0 18 chr13 59561782 59561837 -60183061 + MER8 DNA MER2_type 186 239 0 2468 78 3 10 chr13 59561946 59562255 -60182643 - AluSp SINE Alu -6 307 1 1865 198 6 8 chr13 59562400 59562759 -60182139 - MLT1A1 LTR MaLR -7 358 1 216 250 18 0 chr13 59563133 59563189 -60181709 + MIR SINE MIR 204 260 -2 594 217 22 7 chr13 59563502 59563640 -60181258 + HsTC2 DNA Tc2 1 140 -1758 1027 207 68 44 chr13 59563647 59563985 -60180913 + HsTC2 DNA Tc2 1268 1789 -109 364 350 41 12 chr13 59563997 59564337 -60180561 + L1MEc LINE L1 57 406 -5990 615 111 0 10 chr13 59564900 59564999 -60179899 + Charlie3 DNA MER1_type 2615 2712 0 1280 263 25 21 chr13 59565011 59565494 -60179404 + L1M4 LINE L1 4677 5161 -985 321 169 11 0 chr13 59565563 59565652 -60179246 - MER96B DNA MER1_type? -243 174 85 715 279 39 14 chr13 59565663 59565946 -60178952 - L1MEc LINE L1 -6097 299 10 327 331 8 8 chr13 59567228 59567352 -60177546 - MIR3 SINE MIR -10 198 75 2456 90 0 3 chr13 59567533 59567845 -60177053 + AluY SINE Alu 1 311 0 1934 102 21 3 chr13 59568332 59568616 -60176282 - L1PB1 LINE L1 -5 6146 5858 5708 148 5 11 chr13 59568616 59570216 -60174682 + L1PB1 LINE L1 4556 6150 -1 11895 180 38 19 chr13 59570220 59570338 -60174560 - L1PB1 LINE L1 -278 6589 6475 2101 126 3 0 chr13 59570338 59570631 -60174267 - AluSx SINE Alu -18 294 1 11895 180 38 19 chr13 59570631 59571679 -60173219 - L1PB1 LINE L1 -392 6475 5448 2366 104 0 0 chr13 59571679 59571988 -60172910 - AluY SINE Alu -2 309 1 11895 180 38 19 chr13 59571988 59576524 -60168374 - L1PB1 LINE L1 -1419 5448 635 1167 130 5 0 chr13 59576524 59576724 -60168174 - L1PB1 LINE L1 -6662 201 1 500 259 107 36 chr13 59576897 59577121 -60167777 - MIR SINE MIR -15 247 8 1840 238 36 70 chr13 59577151 59577769 -60167129 - MLT1E2 LTR MaLR -6 620 24 198 304 67 44 chr13 59577985 59578120 -60166778 - L2 LINE L2 -455 2859 2722 213 65 0 0 chr13 59579553 59579584 -60165314 + (A)n Simple_repeat Simple_repeat 1 31 0 6301 103 63 59 chr13 59581065 59582906 -60161992 + pTR5 LTR ERV1 741 2438 0 627 216 58 22 chr13 59582908 59583047 -60161851 - MIR SINE MIR -106 156 13 331 235 32 26 chr13 59583352 59583663 -60161235 + (CA)n Simple_repeat Simple_repeat 1 313 0 243 0 0 0 chr13 59584930 59584957 -60159941 + (A)n Simple_repeat Simple_repeat 1 27 0 209 290 210 32 chr13 59586096 59586220 -60158678 - MIR SINE MIR -44 218 73 371 266 170 26 chr13 59587023 59587252 -60157646 - L2 LINE L2 0 3313 3052 1124 193 65 88 chr13 59587339 59587738 -60157160 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr13 59587758 59587780 -60157118 + AT_rich Low_complexity Low_complexity 1 22 0 1619 140 25 146 chr13 59589250 59589694 -60155204 - MLT1B LTR MaLR 0 390 1 211 388 58 0 chr13 59590113 59590234 -60154664 + L2 LINE L2 3139 3266 -6 2141 113 7 3 chr13 59590266 59590566 -60154332 + AluY SINE Alu 1 301 -10 205 330 123 66 chr13 59592057 59592375 -60152523 - L2 LINE L2 -407 2907 2572 555 173 0 0 chr13 59594348 59594451 -60150447 + MER5A DNA MER1_type 4 106 -83 465 241 128 8 chr13 59595209 59595342 -60149556 + MIR3 SINE MIR 41 189 -19 2146 152 0 0 chr13 59595661 59595963 -60148935 - AluSx SINE Alu -10 302 1 250 290 100 10 chr13 59596042 59596142 -60148756 - MIR SINE MIR -56 152 44 1927 166 0 3 chr13 59596378 59596680 -60148218 - AluJb SINE Alu -11 301 1 202 195 24 0 chr13 59596857 59596898 -60148000 + L3b LINE CR1 1527 1568 -15 1104 304 179 24 chr13 59596901 59597612 -60147286 + L3 LINE CR1 750 1570 -7 222 286 104 0 chr13 59598831 59598908 -60145990 - L3b LINE CR1 -92 1491 1407 271 222 120 60 chr13 59599344 59599461 -60145437 - MIR SINE MIR -71 191 68 1453 232 47 17 chr13 59600977 59601528 -60143370 - MLT2F LTR ERVL -54 609 1 1484 213 57 42 chr13 59601582 59602037 -60142861 - MLT1C LTR MaLR 0 467 6 218 295 16 66 chr13 59602297 59602363 -60142535 - MIR SINE MIR -127 135 76 1964 125 33 7 chr13 59602363 59602667 -60142231 + AluSx SINE Alu 1 312 0 218 295 16 66 chr13 59602667 59602722 -60142176 - MIR SINE MIR -186 76 20 339 282 150 81 chr13 59602778 59603051 -60141847 + L2 LINE L2 2976 3267 -5 1522 151 0 8 chr13 59603326 59603565 -60141333 - AluSg/x SINE Alu 0 312 76 2160 96 10 7 chr13 59603565 59603865 -60141033 - AluY SINE Alu -8 303 2 440 274 178 6 chr13 59604406 59604563 -60140335 + MER5A DNA MER1_type 4 187 -2 428 263 119 0 chr13 59604595 59604755 -60140143 + MIR3 SINE MIR 15 193 -15 317 303 119 0 chr13 59604747 59604856 -60140042 + MER5A DNA MER1_type 68 189 0 * 239 290 130 0 chr13 59606513 59606613 -60138285 + MIR SINE MIR 100 212 -50 474 224 0 0 chr13 59606668 59606766 -60138132 + MER5A DNA MER1_type 9 106 -83 3968 164 94 11 chr13 59607952 59608714 -60136184 + LTR1B LTR ERV1 1 826 0 335 315 31 8 chr13 59608949 59609079 -60135819 + MIR3 SINE MIR 72 204 -4 1507 185 118 14 chr13 59609107 59609463 -60135435 + MLT2C1 LTR ERVL 2 394 -3 491 348 19 0 chr13 59609564 59609771 -60135127 + L1MB1 LINE L1 414 624 -5679 297 381 0 40 chr13 59609782 59609955 -60134943 + L1M3d LINE L1 919 1084 -5219 335 289 13 40 chr13 59610024 59610176 -60134722 + L1MB1 LINE L1 669 816 -5487 294 95 0 48 chr13 59610256 59610319 -60134579 + (GAA)n Simple_repeat Simple_repeat 1 60 0 11700 212 41 12 chr13 59610389 59615237 -60129661 + L1MB1 LINE L1 802 5788 -616 1836 90 41 0 chr13 59615237 59615481 -60129417 + AluSq SINE Alu 44 297 -16 11700 212 41 12 chr13 59615481 59616112 -60128786 + L1MB1 LINE L1 5788 6399 -5 216 281 171 0 chr13 59616241 59616323 -60128575 - L3b LINE CR1 -140 1443 1348 1392 161 9 0 chr13 59616493 59616746 -60128152 + AluSx SINE Alu 62 316 0 828 207 11 6 chr13 59616883 59617062 -60127836 - MER3 DNA MER1_type -29 180 1 392 235 12 0 chr13 59618688 59618773 -60126125 + MER21B LTR ERV1 5 90 -773 2602 231 92 13 chr13 59618883 59619374 -60125524 + MER21B LTR ERV1 98 662 -201 2322 70 0 0 chr13 59619374 59619691 -60125207 - AluY SINE Alu 0 317 1 2602 231 92 13 chr13 59619691 59619894 -60125004 + MER21B LTR ERV1 662 848 -15 381 318 60 7 chr13 59620014 59620165 -60124733 - MIR SINE MIR -72 190 32 180 352 39 16 chr13 59620659 59620787 -60124111 - L2 LINE L2 -5 3267 3137 353 256 186 26 chr13 59621087 59621243 -60123655 + MER5A DNA MER1_type 9 189 0 386 117 17 0 chr13 59621408 59621468 -60123430 + U7 snRNA snRNA 1 61 -2 189 178 0 0 chr13 59622399 59622444 -60122454 + (TG)n Simple_repeat Simple_repeat 2 46 0 235 323 134 55 chr13 59623064 59623281 -60121617 - L2 LINE L2 -2 3270 3037 1071 231 49 0 chr13 59623620 59623845 -60121053 + MIR SINE MIR 23 258 -4 2916 116 34 9 chr13 59624019 59624422 -60120476 + MLT2A2 LTR ERVL 3 419 -34 225 0 0 0 chr13 59624422 59624447 -60120451 + (TG)n Simple_repeat Simple_repeat 2 26 0 2916 116 34 9 chr13 59624447 59624483 -60120415 + MLT2A2 LTR ERVL 419 453 0 25 0 0 0 chr13 59625670 59625695 -60119203 + AT_rich Low_complexity Low_complexity 1 25 0 2110 75 55 38 chr13 59626920 59627099 -60117799 - AluY SINE Alu -8 303 116 2385 77 3 0 chr13 59627099 59627409 -60117489 - AluY SINE Alu 0 311 1 2110 75 55 38 chr13 59627409 59627522 -60117376 - AluY SINE Alu -195 116 6 287 330 220 5 chr13 59627710 59627919 -60116979 + MIR SINE MIR 3 256 -6 2484 151 24 19 chr13 59628668 59629092 -60115806 - MSTB LTR MaLR 0 426 1 205 320 100 0 chr13 59629783 59629883 -60115015 + L2 LINE L2 3202 3311 -2 2296 100 6 10 chr13 59630493 59630804 -60114094 - AluSg SINE Alu 0 310 1 196 368 93 15 chr13 59631158 59631362 -60113536 - MIR SINE MIR -14 248 29 861 266 28 48 chr13 59631764 59632012 -60112886 + MIR SINE MIR 20 262 0 284 267 46 61 chr13 59632323 59632454 -60112444 + MIR SINE MIR 107 235 -27 195 200 25 25 chr13 59632429 59632469 -60112429 + L2 LINE L2 3256 3295 -18 * 1742 149 89 0 chr13 59632469 59632785 -60112113 + MER2 DNA MER2_type 1 344 0 2375 81 10 3 chr13 59633979 59634287 -60110611 - AluSp SINE Alu -3 310 1 338 351 23 52 chr13 59634729 59634903 -60109995 - MER91A DNA MER1_type 0 196 28 881 254 9 5 chr13 59637876 59638096 -60106802 - MER58A DNA MER1_type -2 222 2 1972 172 31 18 chr13 59638266 59638650 -60106248 + MLT1B LTR MaLR 2 390 0 554 241 226 19 chr13 59638735 59639001 -60105897 + MLT1H LTR MaLR 229 549 0 2186 244 54 16 chr13 59639184 59639762 -60105136 - MLT1E2 LTR MaLR -2 624 25 1895 160 3 19 chr13 59639829 59640142 -60104756 + AluJb SINE Alu 2 309 -3 817 273 138 15 chr13 59640637 59641036 -60103862 - MLT1L LTR MaLR 0 615 168 295 233 151 115 chr13 59641038 59641317 -60103581 + L2 LINE L2 3025 3313 0 1232 169 5 10 chr13 59641791 59641998 -60102900 + AluJo SINE Alu 1 206 -106 495 101 13 0 chr13 59642480 59642559 -60102339 + MADE1 DNA Mariner 1 80 0 1898 203 30 140 chr13 59642862 59642943 -60101955 - L1MC4a LINE L1 -865 6943 6855 2220 84 0 0 chr13 59642943 59643238 -60101660 + AluSc SINE Alu 5 299 0 1898 203 30 140 chr13 59643238 59643898 -60101000 - L1MC4a LINE L1 -953 6855 6283 723 312 137 22 chr13 59644914 59645764 -60099134 + L2 LINE L2 2375 3309 -4 337 327 183 51 chr13 59646841 59647221 -60097677 + L2 LINE L2 1102 1430 -1884 2381 92 0 13 chr13 59647221 59647536 -60097362 - AluY SINE Alu 0 311 1 337 327 183 51 chr13 59647536 59648529 -60096369 + L2 LINE L2 1430 2657 -657 2352 65 0 39 chr13 59649936 59650243 -60094655 - AluY SINE Alu -1 310 16 797 192 22 45 chr13 59650343 59650567 -60094331 + L1 LINE L1 2699 2917 -3229 725 184 0 48 chr13 59650567 59650714 -60094184 - FLAM_C SINE Alu -3 140 1 1838 215 78 11 chr13 59650715 59651344 -60093554 + L1 LINE L1 2909 3579 -2567 322 356 23 52 chr13 59651554 59651728 -60093170 - MER91A DNA MER1_type 0 196 28 2196 118 3 13 chr13 59653100 59653414 -60091484 + AluY SINE Alu 1 311 0 249 328 74 26 chr13 59653780 59653969 -60090929 - MLT1L LTR MaLR -65 550 353 826 220 24 19 chr13 59654018 59654227 -60090671 - MLT1A1 LTR MaLR -133 232 23 904 148 148 0 chr13 59654634 59654816 -60090082 - MER3 DNA MER1_type 0 209 1 237 171 114 14 chr13 59655275 59655345 -60089553 + MER68 LTR ERV1 438 514 -48 295 308 115 0 chr13 59655643 59655773 -60089125 + MIR SINE MIR 118 262 0 627 112 9 26 chr13 59656305 59656421 -60088477 + LTR9B LTR ERV1 445 558 -86 1302 208 13 18 chr13 59657081 59657397 -60087501 + MLT1A1 LTR MaLR 50 365 0 250 322 85 5 chr13 59657951 59658150 -60086748 + L1ME LINE L1 5637 5851 -270 617 285 82 43 chr13 59658366 59658833 -60086065 - MLT1J LTR MaLR -7 455 19 22 56 0 0 chr13 59659062 59659098 -60085800 + AT_rich Low_complexity Low_complexity 1 36 0 248 273 40 40 chr13 59659407 59659506 -60085392 + L3 LINE CR1 632 730 -847 12095 178 39 26 chr13 59660295 59662029 -60082869 + L1MA4 LINE L1 1 1710 -4772 252 59 0 0 chr13 59662029 59662063 -60082835 + (CA)n Simple_repeat Simple_repeat 1 34 0 12095 178 39 26 chr13 59662063 59663427 -60081471 + L1MA4 LINE L1 1710 3054 -3428 742 173 0 50 chr13 59663427 59663566 -60081332 - FLAM_C SINE Alu 0 133 2 12095 178 39 26 chr13 59663566 59665892 -60079006 + L1MA4 LINE L1 3054 5489 -993 297 0 0 0 chr13 59665892 59665925 -60078973 + (CA)n Simple_repeat Simple_repeat 2 34 0 12095 178 39 26 chr13 59665925 59666646 -60078252 + L1MA4 LINE L1 5489 6199 -283 23 0 0 0 chr13 59666656 59666679 -60078219 + AT_rich Low_complexity Low_complexity 1 23 0 2119 207 80 65 chr13 59667029 59667740 -60077158 - MER21B LTR ERV1 -48 815 94 856 296 77 27 chr13 59668112 59668629 -60076269 - ERVL LTR ERVL -341 5423 4881 702 181 20 7 chr13 59668721 59668870 -60076028 + MLT1A1 LTR MaLR 204 354 -11 978 255 34 10 chr13 59668881 59669179 -60075719 - ERVL LTR ERVL -939 4825 4521 387 60 0 0 chr13 59669413 59669463 -60075435 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 214 104 21 21 chr13 59669506 59669554 -60075344 + (TTC)n Simple_repeat Simple_repeat 1 48 0 193 375 10 0 chr13 59671067 59671163 -60073735 - L2 LINE L2 -665 2649 2553 2335 81 0 34 chr13 59671519 59671841 -60073057 - AluY SINE Alu 0 311 1 324 70 0 0 chr13 59671884 59671927 -60072971 + (CA)n Simple_repeat Simple_repeat 1 43 0 298 253 0 0 chr13 59672647 59672726 -60072172 - MER116 DNA Mariner -1 79 1 255 309 106 24 chr13 59673941 59674064 -60070834 - L2 LINE L2 -1 3271 3139 471 268 3 13 chr13 59674362 59674514 -60070384 + MIR SINE MIR 8 143 -65 309 302 63 0 chr13 59674881 59675007 -60069891 - MIR3 SINE MIR -6 202 69 258 333 0 0 chr13 59675159 59675225 -60069673 - L2 LINE L2 -213 3059 2994 266 328 106 16 chr13 59675443 59675632 -60069266 + MIR SINE MIR 3 208 -54 22 0 0 0 chr13 59675828 59675850 -60069048 + AT_rich Low_complexity Low_complexity 1 22 0 2251 215 130 95 chr13 59677189 59678396 -60066502 + Charlie2a DNA MER1_type 1 1249 -1613 1253 120 32 33 chr13 59678400 59678659 -60066239 - THE1C LTR MaLR 0 428 158 864 97 0 9 chr13 59678659 59678772 -60066126 - AluSq/x SINE Alu -178 134 23 1052 134 0 0 chr13 59678773 59678922 -60065976 + AluSg/x SINE Alu 149 297 -13 35129 81 18 11 chr13 59678930 59685019 -60059879 + L1PA6 LINE L1 11 6141 -13 1203 106 6 18 chr13 59685019 59685217 -60059681 - THE1C LTR MaLR -153 202 1 582 177 21 95 chr13 59685233 59685390 -60059508 + Charlie2a DNA MER1_type 1257 1391 -1471 2115 107 3 7 chr13 59685390 59685679 -60059219 - AluSg SINE Alu -22 288 1 582 177 21 95 chr13 59685679 59685764 -60059134 + Charlie2a DNA MER1_type 1391 1481 -1381 21 0 0 0 chr13 59685766 59685787 -60059111 + AT_rich Low_complexity Low_complexity 1 21 0 3256 217 93 33 chr13 59685788 59686623 -60058275 + L1MDa LINE L1 3 787 -5753 2849 19 0 0 chr13 59686623 59686940 -60057958 + AluYb8 SINE Alu 1 317 -1 3256 217 93 33 chr13 59686940 59687308 -60057590 + L1MDa LINE L1 787 1132 -5408 1812 134 99 41 chr13 59687308 59687652 -60057246 - THE1B LTR MaLR 0 364 1 3256 217 93 33 chr13 59687652 59688580 -60056318 + L1MDa LINE L1 1132 2519 -4021 564 175 233 123 chr13 59688593 59688885 -60056013 + L1MD2 LINE L1 6010 6333 -26 784 228 72 50 chr13 59688885 59689244 -60055654 + Charlie2a DNA MER1_type 1496 1862 -1000 546 263 77 4 chr13 59689232 59689479 -60055419 + Charlie2a DNA MER1_type 2532 2796 -66 * 2087 224 91 33 chr13 59690071 59690773 -60054125 - HsTC2a DNA MER2_type 0 744 2 1806 281 20 92 chr13 59691107 59692176 -60052722 + L1M2 LINE L1 1 992 -5857 1371 217 22 12 chr13 59692180 59692689 -60052209 + L1M2 LINE L1 2733 3249 -3599 227 289 0 0 chr13 59692691 59692743 -60052155 + FRAM/FAM SINE Alu 2 53 -113 1270 189 26 10 chr13 59692777 59693079 -60051819 + L1MA4A LINE L1 5816 6122 -181 2222 92 3 13 chr13 59693082 59693386 -60051512 + AluY SINE Alu 1 301 -10 273 29 0 0 chr13 59693386 59693420 -60051478 + (TA)n Simple_repeat Simple_repeat 2 35 0 488 147 35 35 chr13 59693420 59693536 -60051362 + L1MA4A LINE L1 6182 6297 -6 354 167 7 65 chr13 59693946 59694084 -60050814 + GA-rich Low_complexity Low_complexity 2 131 0 1953 185 0 5 chr13 59694136 59694503 -60050395 + L1PB4 LINE L1 5786 6150 -6 2289 100 0 3 chr13 59694677 59694976 -60049922 + AluSg SINE Alu 1 298 -12 1921 270 94 21 chr13 59695014 59696005 -60048893 - L1ME LINE L1 -4996 1074 12 473 255 176 25 chr13 59696040 59696244 -60048654 - MIR SINE MIR -12 250 16 322 298 105 41 chr13 59696391 59696562 -60048336 - MER5A DNA MER1_type -1 188 7 316 273 224 22 chr13 59696678 59696861 -60048037 - MIR SINE MIR -37 225 6 971 206 43 123 chr13 59698242 59698639 -60046259 - MLT1A1 LTR MaLR 0 365 1 1710 171 7 23 chr13 59699039 59699344 -60045554 - AluJb SINE Alu -12 300 1 31 26 0 0 chr13 59699582 59699620 -60045278 + AT_rich Low_complexity Low_complexity 1 38 0 486 350 31 27 chr13 59699701 59700287 -60044611 - L1MC4a LINE L1 -1902 5906 5319 267 353 9 0 chr13 59700542 59700658 -60044240 - L1ME LINE L1 -449 5672 5556 1844 137 51 46 chr13 59700689 59701062 -60043836 - THE1C LTR MaLR 0 375 1 977 195 16 0 chr13 59701548 59701733 -60043165 - MER5A DNA MER1_type 0 189 2 421 306 101 47 chr13 59701742 59702001 -60042897 - L3b LINE CR1 -144 1439 1158 2223 87 7 0 chr13 59702001 59702287 -60042611 - AluY SINE Alu -23 288 1 421 306 101 47 chr13 59702287 59702344 -60042554 - L3b LINE CR1 -425 1158 1106 234 296 0 0 chr13 59702630 59702684 -60042214 - L2 LINE L2 0 3272 3219 509 173 87 0 chr13 59703562 59703666 -60041232 + L1M2c LINE L1 534 646 -6143 278 307 48 29 chr13 59703813 59704129 -60040769 + L1M4 LINE L1 3716 4037 -2109 2358 134 26 29 chr13 59704129 59704547 -60040351 - MSTB LTR MaLR 0 426 10 9466 193 29 60 chr13 59704662 59706352 -60038546 + L1M2c LINE L1 6 1747 -5041 2110 139 10 0 chr13 59706352 59706654 -60038244 - AluSx SINE Alu -7 305 1 9466 193 29 60 chr13 59706654 59708754 -60036144 + L1M2c LINE L1 1747 3910 -2878 2214 117 0 7 chr13 59708754 59709061 -60035837 - AluSc SINE Alu -4 305 1 9466 193 29 60 chr13 59709061 59710603 -60034295 + L1M2c LINE L1 3910 5196 -1592 2372 93 3 0 chr13 59710603 59710904 -60033994 + AluSp SINE Alu 1 302 -11 9466 193 29 60 chr13 59710904 59710916 -60033982 + L1M2c LINE L1 5196 5207 -1581 517 72 0 0 chr13 59710916 59710985 -60033913 - THE1A LTR MaLR 0 355 287 290 79 0 0 chr13 59710980 59711018 -60033880 - THE1A LTR MaLR -317 38 1 * 22 35 0 0 chr13 59711722 59711751 -60033147 + AT_rich Low_complexity Low_complexity 1 29 0 235 361 131 0 chr13 59712382 59712512 -60032386 - L2 LINE L2 -5 3267 3121 1277 191 41 108 chr13 59712555 59712690 -60032208 - MER39 LTR ERV1 -20 666 524 1934 70 4 4 chr13 59712690 59712932 -60031966 + AluY SINE Alu 70 311 0 1277 191 41 108 chr13 59712932 59713329 -60031569 - MER39 LTR ERV1 -162 524 1 930 291 128 21 chr13 59713558 59714028 -60030870 + MLT1G1 LTR MaLR 76 595 0 360 232 65 72 chr13 59714489 59714627 -60030271 - L2 LINE L2 -2 3311 3175 354 308 45 32 chr13 59714979 59715135 -60029763 - L2 LINE L2 0 3313 3156 1736 223 138 5 chr13 59715142 59715569 -60029329 - MLT1D LTR MaLR 0 505 22 288 348 90 20 chr13 59715605 59715806 -60029092 - L2 LINE L2 -418 2896 2682 3377 288 120 26 chr13 59715806 59716646 -60028252 - L2 LINE L2 -1515 1799 1039 279 0 0 0 chr13 59716646 59716677 -60028221 + (CAAAC)n Simple_repeat Simple_repeat 2 32 0 3377 288 120 26 chr13 59716677 59717398 -60027500 - L2 LINE L2 -2275 1039 92 902 198 12 0 chr13 59717418 59717580 -60027318 - MER58B DNA MER1_type -10 331 168 286 289 70 40 chr13 59717812 59718013 -60026885 - L2 LINE L2 -857 2457 2251 308 330 9 9 chr13 59718680 59718789 -60026109 + MIR SINE MIR 33 141 -67 398 276 71 0 chr13 59720939 59721037 -60023861 - L2 LINE L2 0 3272 3168 692 300 113 61 chr13 59721328 59722207 -60022691 + L2 LINE L2 2378 3313 0 411 332 75 36 chr13 59722356 59722609 -60022289 - L2 LINE L2 -408 2906 2644 445 286 41 14 chr13 59722756 59722903 -60021995 + MIR SINE MIR 3 153 -109 2037 195 50 44 chr13 59725081 59725583 -60019315 + MLT1D LTR MaLR 1 505 0 433 239 26 8 chr13 59726303 59726420 -60018478 - MIR SINE MIR -50 212 94 230 248 51 103 chr13 59727264 59727381 -60017517 - MIR SINE MIR -145 117 7 2346 106 0 0 chr13 59727648 59727950 -60016948 + AluSx SINE Alu 1 302 -10 2377 131 84 30 chr13 59728090 59728495 -60016403 + MSTA LTR MaLR 2 428 0 551 255 34 20 chr13 59728741 59728890 -60016008 - MLT1D LTR MaLR -354 151 1 384 373 22 13 chr13 59728894 59729119 -60015779 - L3 LINE CR1 -81 1496 1270 369 311 119 56 chr13 59729444 59730041 -60014857 + L2 LINE L2 2651 3310 -3 1043 249 47 0 chr13 59730247 59730460 -60014438 - MER58A DNA MER1_type 0 224 2 2268 144 29 27 chr13 59730629 59731003 -60013895 - THE1C LTR MaLR 0 375 1 389 352 65 0 chr13 59732940 59733139 -60011759 + LTR33 LTR ERVL 3 214 -307 433 216 196 14 chr13 59733203 59733351 -60011547 + LTR33 LTR ERVL 329 503 -18 480 295 41 97 chr13 59733468 59733568 -60011330 + L1M4 LINE L1 4624 4728 -1418 1464 201 3 41 chr13 59733568 59733886 -60011012 - AluJo SINE Alu -6 306 1 480 295 41 97 chr13 59733886 59733997 -60010901 + L1M4 LINE L1 4728 4844 -1302 2952 79 3 0 chr13 59733997 59734351 -60010547 + THE1A LTR MaLR 1 355 0 12008 101 16 1 chr13 59734351 59735907 -60008991 + THE1A-int LTR MaLR 1 1580 0 2711 88 35 0 chr13 59735907 59736250 -60008648 + THE1A LTR MaLR 1 355 0 480 295 41 97 chr13 59736250 59736520 -60008378 + L1M4 LINE L1 4841 5081 -1065 295 250 115 45 chr13 59736646 59736802 -60008096 + L1MEd LINE L1 4 170 -5949 1364 276 91 56 chr13 59737100 59737580 -60007318 + L1MEd LINE L1 572 1008 -5123 1992 157 0 0 chr13 59737580 59737873 -60007025 - AluSx SINE Alu -19 293 1 1364 276 91 56 chr13 59737873 59738379 -60006519 + L1MEd LINE L1 1008 1495 -4636 186 254 0 0 chr13 59738705 59738772 -60006126 + (TA)n Simple_repeat Simple_repeat 1 67 0 226 184 53 66 chr13 59739232 59739308 -60005590 + L1ME4a LINE L1 5989 6063 -58 689 261 107 18 chr13 59739732 59740058 -60004840 + MLT1J1 LTR MaLR 1 355 -91 1616 99 37 0 chr13 59740609 59740851 -60004047 + Tigger7 DNA MER2_type 2329 2579 -8 393 354 86 41 chr13 59743280 59743594 -60001304 + L2 LINE L2 2857 3184 -88 1450 116 18 109 chr13 59743594 59743816 -60001082 + Tigger2a DNA MER2_type 2 194 -2514 2309 109 0 0 chr13 59743816 59744127 -60000771 - AluY SINE Alu 0 311 1 1450 116 18 109 chr13 59744127 59744189 -60000709 + Tigger2a DNA MER2_type 194 260 -174 682 157 20 0 chr13 59744190 59744292 -60000606 + AluSq SINE Alu 2 105 -208 22 56 0 0 chr13 59744896 59744932 -59999966 + AT_rich Low_complexity Low_complexity 1 36 0 1540 123 0 0 chr13 59744951 59745155 -59999743 + AluSq SINE Alu 98 301 -12 1193 169 5 0 chr13 59745155 59745339 -59999559 + Tigger2a DNA MER2_type 250 434 0 216 0 0 0 chr13 59745576 59745600 -59999298 + (T)n Simple_repeat Simple_repeat 1 24 0 577 318 45 18 chr13 59746878 59747098 -59997800 + MIR SINE MIR 19 244 -18 191 248 181 57 chr13 59747605 59747710 -59997188 + MIR3 SINE MIR 91 208 0 288 368 119 0 chr13 59747714 59747907 -59996991 - L3 LINE CR1 -148 1429 1214 1907 142 130 6 chr13 59752225 59752549 -59992349 - THE1B LTR MaLR 0 364 1 279 0 0 0 chr13 59752592 59752623 -59992275 + (CA)n Simple_repeat Simple_repeat 1 31 0 2246 200 49 12 chr13 59752625 59753102 -59991796 - MLT2B1 LTR ERVL -20 534 4 2216 68 53 0 chr13 59753103 59753384 -59991514 + AluY SINE Alu 2 297 -14 1051 304 53 11 chr13 59755997 59756356 -59988542 + L2 LINE L2 2940 3313 0 236 135 0 39 chr13 59756557 59756609 -59988289 + (CATA)n Simple_repeat Simple_repeat 2 51 0 409 261 43 17 chr13 59757465 59757580 -59987318 + L2 LINE L2 3196 3313 0 257 230 14 0 chr13 59757740 59757814 -59987084 + (CATA)n Simple_repeat Simple_repeat 3 77 0 1667 261 90 58 chr13 59758185 59758916 -59985982 + L2 LINE L2 1205 1959 -1355 2439 50 7 7 chr13 59759512 59759812 -59985086 - AluY SINE Alu -11 300 1 439 183 0 0 chr13 59759850 59759921 -59984977 - AluJ/FLAM SINE Alu -238 74 4 209 302 45 28 chr13 59762154 59762333 -59982565 + L2 LINE L2 1789 1970 -1344 229 312 58 51 chr13 59762357 59762495 -59982403 + MER77 LTR ERV1 64 202 -403 * 1000 273 77 75 chr13 59762465 59763077 -59981821 + MER21B LTR ERV1 100 712 -151 264 238 0 32 chr13 59763166 59763229 -59981669 - MIR SINE MIR -50 212 152 336 282 71 65 chr13 59763939 59763989 -59980909 - MIR SINE MIR -11 251 203 1548 209 0 19 chr13 59763989 59764296 -59980602 - AluJo SINE Alu -11 301 1 336 282 71 65 chr13 59764296 59764307 -59980591 - MIR SINE MIR -59 203 194 2212 46 0 8 chr13 59764307 59764569 -59980329 - AluY SINE Alu -8 303 44 336 282 71 65 chr13 59764569 59764676 -59980222 - MIR SINE MIR -68 194 81 1056 305 41 23 chr13 59765051 59765441 -59979457 - L3 LINE CR1 -1 1576 1180 483 263 34 8 chr13 59765964 59766082 -59978816 + L2 LINE L2 3192 3312 -1 1284 163 49 52 chr13 59766261 59766586 -59978312 - MER33 DNA MER1_type 0 324 1 25 31 0 0 chr13 59769671 59769703 -59975195 + AT_rich Low_complexity Low_complexity 1 32 0 1795 153 0 38 chr13 59770116 59770430 -59974468 + AluJb SINE Alu 2 303 -9 353 318 121 9 chr13 59770580 59770803 -59974095 - MIR SINE MIR 0 262 15 941 146 7 0 chr13 59771273 59771417 -59973481 - FRAM SINE Alu -32 144 1 340 252 140 0 chr13 59771985 59772092 -59972806 - L2 LINE L2 0 3313 3192 288 333 71 7 chr13 59774432 59774573 -59970325 - MIR SINE MIR -92 170 21 209 250 21 0 chr13 59777408 59777456 -59967442 - L2 LINE L2 -10 3303 3255 210 71 0 0 chr13 59778722 59778750 -59966148 + (TG)n Simple_repeat Simple_repeat 2 29 0 222 257 0 119 chr13 59778892 59778993 -59965905 - MIR3 SINE MIR -31 177 89 184 310 141 0 chr13 59779248 59779319 -59965579 - MIR SINE MIR -71 137 57 520 308 66 91 chr13 59779684 59780093 -59964805 - L2 LINE L2 0 3272 2874 240 35 0 0 chr13 59781066 59781095 -59963803 + (T)n Simple_repeat Simple_repeat 1 29 0 224 300 29 0 chr13 59781511 59781581 -59963317 - MIR SINE MIR -64 144 73 476 285 119 48 chr13 59781833 59782294 -59962604 - L2 LINE L2 -103 3210 2711 2630 42 0 3 chr13 59786108 59786420 -59958478 + AluY SINE Alu 1 311 0 1104 250 205 19 chr13 59787919 59788438 -59956460 - L2 LINE L2 -2 3311 2708 407 245 9 19 chr13 59789620 59789726 -59955172 + MLT1J2 LTR MaLR 344 448 -2 321 237 26 103 chr13 59790360 59790516 -59954382 + L2 LINE L2 3169 3312 -1 326 329 194 17 chr13 59791683 59791920 -59952978 + L2 LINE L2 2805 3083 -230 189 0 0 0 chr13 59791972 59791993 -59952905 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1176 145 61 0 chr13 59792048 59792276 -59952622 + MER33 DNA MER1_type 1 242 -82 312 305 47 25 chr13 59792321 59792760 -59952138 - L1M4b LINE L1 -5002 1945 1346 430 189 28 63 chr13 59793416 59793459 -59951439 + L2 LINE L2 3114 3157 -156 1829 170 58 6 chr13 59793459 59793789 -59951109 + MER7A DNA MER2_type 1 345 -1 430 189 28 63 chr13 59793789 59793888 -59951010 + L2 LINE L2 3157 3251 -62 812 241 109 42 chr13 59794229 59794540 -59950358 - MARNA DNA Mariner -88 498 167 1839 167 42 3 chr13 59794917 59795247 -59949651 + MER2 DNA MER2_type 2 344 0 1053 241 34 40 chr13 59796643 59796996 -59947902 + L2 LINE L2 1417 1767 -1547 1182 165 62 50 chr13 59796996 59797238 -59947660 - AluJo SINE Alu -14 298 54 1504 268 77 12 chr13 59797239 59797720 -59947178 + L2 LINE L2 1759 2270 -1044 31 0 0 0 chr13 59797755 59797786 -59947112 + AT_rich Low_complexity Low_complexity 1 31 0 7796 19 0 0 chr13 59798206 59799189 -59945709 + L1PA3 LINE L1 5172 6154 -1 330 268 177 24 chr13 59799523 59799687 -59945211 + MIR SINE MIR 74 262 0 278 233 12 0 chr13 59800410 59800496 -59944402 + (CCA)n Simple_repeat Simple_repeat 2 88 0 475 283 82 38 chr13 59800537 59800721 -59944177 - MIR SINE MIR -48 214 23 198 348 14 0 chr13 59800717 59800786 -59944112 + L2 LINE L2 3244 3313 0 * 365 320 16 0 chr13 59801377 59801505 -59943393 + L2 LINE L2 2554 2683 -631 2151 136 12 18 chr13 59801755 59802086 -59942812 - MER1B DNA MER1_type -10 329 1 184 232 143 0 chr13 59802097 59802153 -59942745 + L2 LINE L2 3250 3313 0 526 212 119 8 chr13 59802173 59802291 -59942607 - FLAM_A SINE Alu -2 131 1 308 260 133 77 chr13 59802621 59802802 -59942096 + MLT1L LTR MaLR 200 390 -225 1300 206 3 50 chr13 59802881 59803014 -59941884 + AluJo SINE Alu 13 128 -184 2817 7 0 0 chr13 59803014 59803321 -59941577 + AluYa5 SINE Alu 1 307 -4 1300 206 3 50 chr13 59803321 59803469 -59941429 + AluJo SINE Alu 128 281 -31 228 226 57 0 chr13 59804195 59804248 -59940650 + L2 LINE L2 3254 3309 -4 338 399 19 0 chr13 59804414 59804572 -59940326 - L3 LINE CR1 -74 1503 1343 261 271 158 30 chr13 59804675 59804808 -59940090 + MIR SINE MIR 83 232 -30 2316 72 0 3 chr13 59805118 59805410 -59939488 - AluY SINE Alu -20 291 1 455 281 51 22 chr13 59805488 59805666 -59939232 - MIR SINE MIR -27 235 53 212 57 0 29 chr13 59806737 59806758 -59938140 + (CAAAC)n Simple_repeat Simple_repeat 1 54 0 212 57 0 29 chr13 59806758 59806793 -59938105 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 284 308 20 77 chr13 59806937 59807132 -59937766 - MIR SINE MIR -3 259 76 189 0 0 0 chr13 59808028 59808049 -59936849 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 379 316 106 55 chr13 59808640 59808896 -59936002 + MLT1J LTR MaLR 235 503 -8 802 144 352 37 chr13 59808956 59809241 -59935657 - Tigger3(Golem) DNA MER2_type -23 3006 2 34 89 0 0 chr13 59809329 59809419 -59935479 + AT_rich Low_complexity Low_complexity 1 90 0 201 431 65 0 chr13 59809446 59809569 -59935329 + L2 LINE L2 3141 3271 -1 246 62 0 0 chr13 59812395 59812427 -59932471 + (TG)n Simple_repeat Simple_repeat 1 32 0 2272 96 0 13 chr13 59812545 59812848 -59932050 - AluSg SINE Alu -11 299 1 195 42 0 0 chr13 59812895 59812919 -59931979 + (A)n Simple_repeat Simple_repeat 1 24 0 618 184 41 77 chr13 59813013 59813209 -59931689 + MER53 DNA DNA 1 189 0 21 36 0 0 chr13 59814899 59814927 -59929971 + AT_rich Low_complexity Low_complexity 1 28 0 685 238 31 54 chr13 59816401 59816624 -59928274 + MIR SINE MIR 45 262 0 787 202 113 101 chr13 59818401 59818737 -59926161 + L1MD2 LINE L1 5981 6320 -39 827 142 0 0 chr13 59818744 59818871 -59926027 - AluJb SINE Alu -5 307 181 577 294 42 60 chr13 59819570 59819835 -59925063 + MIR SINE MIR 3 262 0 1596 173 7 34 chr13 59821390 59821685 -59923213 - AluJo SINE Alu -19 293 7 494 202 55 93 chr13 59821835 59822018 -59922880 - MER112 DNA MER1_type -83 177 2 22 35 0 0 chr13 59823723 59823752 -59921146 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 59824355 59824376 -59920522 + AT_rich Low_complexity Low_complexity 1 21 0 5109 103 9 3 chr13 59824719 59825457 -59919441 - L1PA12 LINE L1 0 6168 5426 293 133 0 0 chr13 59825460 59825505 -59919393 - L1PA12 LINE L1 -775 5386 5342 * 4139 156 27 4 chr13 59825503 59826284 -59918614 + L1PA12 LINE L1 4544 5342 -804 216 363 50 0 chr13 59826326 59826406 -59918492 - L2 LINE L2 -2 3311 3228 280 229 206 53 chr13 59826555 59826725 -59918173 + MIR SINE MIR 48 243 -19 2042 128 3 3 chr13 59826821 59827125 -59917773 + AluSx SINE Alu 1 304 -8 224 300 29 0 chr13 59828738 59828808 -59916090 + MIR SINE MIR 73 144 -64 225 0 0 0 chr13 59829224 59829249 -59915649 + (A)n Simple_repeat Simple_repeat 1 25 0 850 212 67 40 chr13 59829804 59830118 -59914780 + MSTD LTR MaLR 45 396 0 192 200 0 0 chr13 59830223 59830268 -59914630 + (TA)n Simple_repeat Simple_repeat 2 46 0 231 226 71 0 chr13 59830271 59830355 -59914543 + L1MC4 LINE L1 6614 6703 -1339 353 252 84 98 chr13 59830385 59830421 -59914477 - HAL1 LINE L1 -1479 1028 993 1678 185 3 24 chr13 59830421 59830719 -59914179 + AluJo SINE Alu 1 292 -20 353 252 84 98 chr13 59830719 59830896 -59914002 - HAL1 LINE L1 -1514 993 818 304 231 0 0 chr13 59831293 59831345 -59913553 + MIR SINE MIR 2 53 -209 2140 188 24 15 chr13 59831488 59831951 -59912947 + MLT1C LTR MaLR 1 467 0 376 330 101 38 chr13 59832394 59832603 -59912295 - MIR SINE MIR -13 249 28 225 94 0 0 chr13 59833816 59833848 -59911050 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 678 163 0 0 chr13 59835663 59835804 -59909094 + GA-rich Low_complexity Low_complexity 2 142 0 422 229 139 63 chr13 59836304 59836527 -59908371 + L1ME LINE L1 5381 5620 -501 2730 33 0 0 chr13 59836627 59836934 -59907964 - AluY SINE Alu -4 307 1 636 259 106 24 chr13 59837174 59837872 -59907026 + L1MD2 LINE L1 5309 6165 -5 1719 169 3 44 chr13 59838003 59838323 -59906575 - AluJo SINE Alu -3 309 3 1878 80 0 16 chr13 59838933 59839217 -59905681 + AluSg SINE Alu 37 316 0 571 273 102 62 chr13 59841158 59841286 -59903612 - MLT1F LTR MaLR -252 290 169 2367 68 10 13 chr13 59841286 59841593 -59903305 - AluSc SINE Alu -3 306 1 571 273 102 62 chr13 59841593 59841739 -59903159 - MLT1F LTR MaLR -373 169 5 401 290 145 24 chr13 59842038 59842245 -59902653 - MIR SINE MIR -26 236 5 295 202 262 0 chr13 59842451 59842535 -59902363 - MER2 DNA MER2_type -172 173 68 395 316 156 28 chr13 59842735 59842953 -59901945 + MIR SINE MIR 8 253 -9 1279 158 194 0 chr13 59843973 59844226 -59900672 + AluJb SINE Alu 1 302 0 971 201 64 17 chr13 59844323 59844408 -59900490 - MER39 LTR ERV1 -12 695 615 2378 119 23 0 chr13 59844408 59844762 -59900136 - THE1B LTR MaLR 0 364 3 971 201 64 17 chr13 59844762 59844989 -59899909 - MER39 LTR ERV1 -92 615 331 598 178 0 46 chr13 59845058 59845232 -59899666 + GA-rich Low_complexity Low_complexity 2 167 0 222 353 19 66 chr13 59845645 59845903 -59898995 - L2 LINE L2 -601 2713 2468 354 211 63 11 chr13 59846560 59846655 -59898243 + L1ME3A LINE L1 6062 6161 -9 307 330 75 0 chr13 59846818 59846924 -59897974 - L2 LINE L2 -8 3264 3151 1455 63 117 5 chr13 59846927 59847133 -59897765 - MER30 DNA MER1_type 0 230 2 22 0 0 0 chr13 59848641 59848663 -59896235 + AT_rich Low_complexity Low_complexity 1 22 0 1876 151 7 10 chr13 59848717 59849021 -59895877 - AluSx SINE Alu -8 304 2 270 281 73 61 chr13 59849146 59849310 -59895588 + MER5B DNA MER1_type 13 178 0 2137 129 13 0 chr13 59851430 59851733 -59893165 + AluSx SINE Alu 1 307 -5 2564 60 0 0 chr13 59851737 59852039 -59892859 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 59852177 59852205 -59892693 + AT_rich Low_complexity Low_complexity 1 28 0 453 275 183 2 chr13 59854654 59854834 -59890064 - MIR SINE MIR -51 211 1 1964 153 3 3 chr13 59854866 59855166 -59889732 - AluJb SINE Alu -12 300 1 21 71 0 0 chr13 59855263 59855305 -59889593 + AT_rich Low_complexity Low_complexity 1 42 0 453 288 33 14 chr13 59856725 59856908 -59887990 + MIR SINE MIR 13 262 0 255 258 15 15 chr13 59857003 59857069 -59887829 + MIR SINE MIR 26 91 -171 596 230 45 22 chr13 59857303 59857481 -59887417 - MIR SINE MIR -13 249 68 23 0 0 0 chr13 59857808 59857831 -59887067 + AT_rich Low_complexity Low_complexity 1 23 0 355 349 48 21 chr13 59857850 59858039 -59886859 + L3 LINE CR1 664 857 -720 582 256 52 52 chr13 59858147 59858319 -59886579 + MER5B DNA MER1_type 1 172 -6 812 179 95 0 chr13 59858523 59858691 -59886207 + MER5A DNA MER1_type 3 186 -3 23 54 0 0 chr13 59859994 59860031 -59884867 + AT_rich Low_complexity Low_complexity 1 37 0 271 287 43 43 chr13 59860484 59860578 -59884320 - L2 LINE L2 -5 3308 3215 180 353 23 58 chr13 59860742 59860915 -59883983 + L2 LINE L2 2936 3102 -170 485 342 70 37 chr13 59861823 59862066 -59882832 + MIR SINE MIR 4 254 -8 180 77 0 0 chr13 59862067 59862093 -59882805 + (TTA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr13 59862862 59862885 -59882013 + AT_rich Low_complexity Low_complexity 1 23 0 262 217 76 12 chr13 59863053 59863139 -59881759 + MIR SINE MIR 34 133 -75 22 0 0 0 chr13 59864114 59864136 -59880762 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 59864421 59864452 -59880446 + AT_rich Low_complexity Low_complexity 1 31 0 2303 107 0 0 chr13 59865402 59865711 -59879187 - AluY SINE Alu -2 309 1 2749 245 106 48 chr13 59866798 59867099 -59877799 + L1MC4 LINE L1 6269 6551 -1257 219 36 0 0 chr13 59867099 59867127 -59877771 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2749 245 106 48 chr13 59867127 59868245 -59876653 + L1MC4 LINE L1 6551 7705 -103 573 301 112 65 chr13 59868286 59868608 -59876290 + L2 LINE L2 2932 3268 -4 203 179 0 0 chr13 59869076 59869115 -59875783 + T-rich Low_complexity Low_complexity 5 43 0 284 308 143 22 chr13 59869355 59869537 -59875361 + MIR SINE MIR 9 212 -50 2269 92 0 7 chr13 59869680 59869983 -59874915 - AluSx SINE Alu -11 301 1 197 300 14 43 chr13 59870150 59870220 -59874678 - L2 LINE L2 -3 3269 3202 238 314 12 47 chr13 59870427 59870513 -59874385 - L2 LINE L2 -258 3014 2932 26 0 0 0 chr13 59870646 59870672 -59874226 + AT_rich Low_complexity Low_complexity 1 26 0 266 301 91 14 chr13 59870968 59871111 -59873787 - L2 LINE L2 -942 2372 2219 806 228 85 88 chr13 59871262 59871684 -59873214 + HAL1 LINE L1 1388 1808 -699 1719 215 6 3 chr13 59871950 59872276 -59872622 + MLT1A1 LTR MaLR 39 365 0 202 224 0 0 chr13 59872303 59872352 -59872546 + A-rich Low_complexity Low_complexity 1 49 0 490 231 94 80 chr13 59872354 59872653 -59872245 + HAL1 LINE L1 2122 2424 -83 308 349 94 56 chr13 59873066 59873738 -59871160 - L2 LINE L2 -437 2877 2179 583 309 15 45 chr13 59873738 59874003 -59870895 + MIR SINE MIR 3 259 -3 2194 112 3 0 chr13 59874254 59874550 -59870348 - AluY SINE Alu -14 297 1 1869 138 0 4 chr13 59874576 59874844 -59870054 - AluSx SINE Alu -43 269 3 225 94 0 0 chr13 59875009 59875041 -59869857 + (CA)n Simple_repeat Simple_repeat 1 32 0 255 307 27 13 chr13 59875078 59875153 -59869745 - L3b LINE CR1 -114 1469 1394 669 258 84 18 chr13 59875548 59875773 -59869125 + MIR SINE MIR 20 259 -3 561 170 0 0 chr13 59876198 59876292 -59868606 + AluSg/x SINE Alu 193 286 -23 1587 178 29 0 chr13 59876996 59877272 -59867626 + AluJb SINE Alu 1 284 -28 713 221 0 8 chr13 59877606 59877737 -59867161 + FLAM_C SINE Alu 4 133 -10 1839 151 60 26 chr13 59877901 59878252 -59866646 + MLT1A1 LTR MaLR 3 365 0 813 273 61 68 chr13 59878257 59878507 -59866391 + L1MC4a LINE L1 5349 5599 -2209 725 187 0 0 chr13 59878507 59878630 -59866268 + FLAM_C SINE Alu 1 123 -10 813 273 61 68 chr13 59878630 59878922 -59865976 + L1MC4a LINE L1 5599 5887 -1921 280 394 53 0 chr13 59880019 59880189 -59864709 - L2 LINE L2 -861 2453 2275 188 222 74 19 chr13 59880203 59880257 -59864641 - L2 LINE L2 -1 3271 3215 1364 176 48 58 chr13 59881124 59881437 -59863461 - AluJo SINE Alu 0 312 3 22 35 0 0 chr13 59881471 59881500 -59863398 + AT_rich Low_complexity Low_complexity 1 29 0 504 319 72 25 chr13 59881518 59881753 -59863145 - MIR SINE MIR -6 256 11 758 323 184 39 chr13 59882206 59883937 -59860961 + L2 LINE L2 290 2292 -1022 518 236 36 0 chr13 59883937 59884047 -59860851 + MER81 DNA DNA 1 114 0 758 323 184 39 chr13 59884047 59884108 -59860790 + L2 LINE L2 2292 2343 -971 1913 131 62 3 chr13 59884119 59884440 -59860458 + MER47A DNA MER2_type 27 366 0 256 297 135 0 chr13 59884441 59884552 -59860346 + L2 LINE L2 2343 2468 -846 21 0 0 0 chr13 59884685 59884706 -59860192 + AT_rich Low_complexity Low_complexity 1 21 0 747 182 0 0 chr13 59884846 59884978 -59859920 - FLAM_C SINE Alu -1 132 1 2142 104 3 0 chr13 59885625 59885922 -59858976 - AluY SINE Alu -13 298 1 215 349 104 9 chr13 59887112 59887218 -59857680 - MIR SINE MIR -63 145 30 638 264 62 16 chr13 59887306 59887548 -59857350 + L2 LINE L2 3056 3308 -5 336 370 91 8 chr13 59888239 59888493 -59856405 + L2 LINE L2 2469 2743 -571 414 0 0 0 chr13 59889545 59889591 -59855307 + (CA)n Simple_repeat Simple_repeat 1 46 0 318 271 193 41 chr13 59891499 59891717 -59853181 - L3 LINE CR1 -8 1569 1319 203 213 0 53 chr13 59892573 59892648 -59852250 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 2779 13 0 9 chr13 59892814 59893153 -59851745 - AluYb8 SINE Alu 0 336 1 377 206 14 0 chr13 59893165 59893238 -59851660 - MER58 DNA MER1_type -3 2417 2344 203 189 0 0 chr13 59893738 59893775 -59851123 + A-rich Low_complexity Low_complexity 1 37 0 280 285 317 0 chr13 59894551 59894737 -59850161 + MIR SINE MIR 6 250 -12 216 0 0 0 chr13 59894755 59894779 -59850119 + (TTG)n Simple_repeat Simple_repeat 2 25 0 277 337 92 11 chr13 59896738 59896922 -59847976 + L2 LINE L2 3095 3293 -20 226 282 115 52 chr13 59898467 59898719 -59846179 + L1ME LINE L1 5343 5610 -511 22 0 0 0 chr13 59898876 59898898 -59846000 + AT_rich Low_complexity Low_complexity 1 22 0 2245 80 3 3 chr13 59899389 59899688 -59845210 + AluSq SINE Alu 1 299 -14 951 155 0 0 chr13 59900324 59900472 -59844426 - AluJb SINE Alu -7 305 158 461 171 32 82 chr13 59900472 59900630 -59844268 - L1MC5 LINE L1 -394 7567 7418 2440 75 3 0 chr13 59901626 59901931 -59842967 + AluY SINE Alu 1 306 -5 711 69 0 0 chr13 59902406 59902508 -59842390 + (TCCA)n Simple_repeat Simple_repeat 1 102 0 216 260 27 14 chr13 59902547 59902620 -59842278 + GA-rich Low_complexity Low_complexity 3 76 0 290 283 292 12 chr13 59902722 59903012 -59841886 - L2 LINE L2 -232 3081 2731 1363 235 131 12 chr13 59903055 59903459 -59841439 + LTR40a LTR ERVL 68 519 0 237 243 126 39 chr13 59903569 59903672 -59841226 - MIR SINE MIR -143 119 8 2244 95 3 23 chr13 59903743 59904047 -59840851 + AluSc SINE Alu 1 298 -11 209 174 0 43 chr13 59904098 59904144 -59840754 + (TATG)n Simple_repeat Simple_repeat 2 45 0 1302 181 0 30 chr13 59905002 59905267 -59839631 - L1MA8 LINE L1 -287 6004 5748 226 296 116 6 chr13 59905576 59905748 -59839150 - L1MEd LINE L1 -1587 4542 4352 735 176 15 15 chr13 59905789 59905925 -59838973 - AluJo SINE Alu -176 136 1 547 290 116 37 chr13 59906409 59906813 -59838085 - L1MEd LINE L1 -2579 3550 3115 764 167 6 0 chr13 59906881 59907037 -59837861 - L1MA4 LINE L1 -7 6293 6137 891 292 127 15 chr13 59907049 59907775 -59837123 - L1MEd LINE L1 -3137 2992 2186 821 189 61 0 chr13 59908245 59908409 -59836489 + MER58B DNA MER1_type 168 341 0 806 298 112 27 chr13 59908500 59909373 -59835525 - L1MEd LINE L1 -4771 1539 561 255 208 34 114 chr13 59909447 59909596 -59835302 - L1MEd LINE L1 -5903 216 80 535 271 131 27 chr13 59909988 59910209 -59834689 + MIR SINE MIR 19 262 0 43 101 0 0 chr13 59910869 59911017 -59833881 + AT_rich Low_complexity Low_complexity 1 148 0 23 0 0 0 chr13 59911654 59911677 -59833221 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 59912403 59912429 -59832469 + AT_rich Low_complexity Low_complexity 1 26 0 219 36 0 0 chr13 59912597 59912625 -59832273 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2044 89 7 14 chr13 59912628 59912910 -59831988 - AluSc SINE Alu -29 280 1 439 262 96 70 chr13 59914389 59914618 -59830280 - MIR SINE MIR -15 247 13 6942 34 2 0 chr13 59915206 59916032 -59828866 - L1PA3 LINE L1 0 6155 5328 * 12758 26 1 1 chr13 59916031 59917564 -59827334 + L1PA3 LINE L1 3820 5353 -793 669 226 142 24 chr13 59919566 59919778 -59825120 + MIR SINE MIR 24 260 -2 190 278 222 0 chr13 59919798 59919870 -59825028 - L2 LINE L2 -6 3266 3179 248 379 40 17 chr13 59919872 59920046 -59824852 - L2 LINE L2 -229 3043 2866 21 71 0 0 chr13 59920599 59920641 -59824257 + AT_rich Low_complexity Low_complexity 1 42 0 267 326 32 21 chr13 59921013 59921108 -59823790 + MIR SINE MIR 48 143 -119 477 307 127 57 chr13 59921133 59921377 -59823521 + MIR SINE MIR 2 262 0 2488 211 58 34 chr13 59921411 59922002 -59822896 - MER77 LTR ERV1 0 605 1 564 286 95 22 chr13 59922005 59922236 -59822662 - MIR SINE MIR -13 249 2 23 54 0 0 chr13 59923233 59923270 -59821628 + AT_rich Low_complexity Low_complexity 1 37 0 890 248 28 0 chr13 59923840 59924054 -59820844 + MIR SINE MIR 42 261 -1 410 257 146 18 chr13 59925372 59925543 -59819355 - L2 LINE L2 -7 3306 3114 204 40 0 0 chr13 59928566 59928591 -59816307 + (TG)n Simple_repeat Simple_repeat 2 26 0 1864 116 0 8 chr13 59929000 59929258 -59815640 + AluSx SINE Alu 5 260 -52 222 37 0 0 chr13 59929265 59929292 -59815606 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr13 59929732 59929754 -59815144 + AT_rich Low_complexity Low_complexity 1 22 0 1392 204 11 21 chr13 59931478 59931763 -59813135 + AluJo SINE Alu 1 282 -30 280 266 25 0 chr13 59931839 59931918 -59812980 + (TAG)n Simple_repeat Simple_repeat 2 82 0 963 271 57 0 chr13 59931918 59932162 -59812736 - MIR SINE MIR 0 262 5 29 70 0 0 chr13 59932357 59932414 -59812484 + AT_rich Low_complexity Low_complexity 1 57 0 2167 248 58 25 chr13 59932710 59933387 -59811511 - MER21B LTR ERV1 -152 711 13 201 295 195 21 chr13 59933417 59933607 -59811291 + L3 LINE CR1 1299 1521 -56 1597 113 16 4 chr13 59934046 59934293 -59810605 + L1PA10 LINE L1 5919 6168 0 1942 83 0 0 chr13 59934448 59934700 -59810198 + AluY SINE Alu 57 308 -3 2211 120 7 0 chr13 59935203 59935511 -59809387 - AluSg SINE Alu 0 310 1 1773 166 13 23 chr13 59936964 59937266 -59807632 + AluJo SINE Alu 2 300 -12 1057 263 175 21 chr13 59938001 59938480 -59806418 + L2 LINE L2 2234 2786 -528 13605 23 0 1 chr13 59938483 59940854 -59804044 - L1PA2 LINE L1 0 6155 3788 4059 40 0 0 chr13 59940856 59941357 -59803541 + L1PA2 LINE L1 3300 3800 -2346 703 242 263 14 chr13 59941358 59941733 -59803165 + L2 LINE L2 2779 3232 -81 1925 106 67 0 chr13 59941805 59942087 -59802811 - AluSc SINE Alu -8 301 1 272 246 0 0 chr13 59942097 59942166 -59802732 + MLT1J LTR MaLR 443 511 0 210 196 65 22 chr13 59942166 59942212 -59802686 + L2 LINE L2 3210 3257 -15 348 194 0 60 chr13 59942774 59942867 -59802031 + L1ME3A LINE L1 6079 6164 0 639 263 52 56 chr13 59943119 59943351 -59801547 - MIR SINE MIR -10 252 22 2069 148 120 5 chr13 59943492 59943876 -59801022 + MSTA LTR MaLR 1 428 0 1345 201 111 30 chr13 59944107 59944539 -59800359 + MLT1C LTR MaLR 1 467 0 41 27 0 40 chr13 59945582 59945656 -59799242 + AT_rich Low_complexity Low_complexity 1 71 0 192 135 0 0 chr13 59946055 59946092 -59798806 + (TA)n Simple_repeat Simple_repeat 1 37 0 1890 150 14 99 chr13 59946499 59946925 -59797973 - MLT1B LTR MaLR 0 390 1 460 294 71 79 chr13 59948129 59948483 -59796415 - L2 LINE L2 -916 2398 2048 224 296 0 0 chr13 59948554 59948608 -59796290 + L2 LINE L2 3217 3270 -2 21 36 0 0 chr13 59949294 59949322 -59795576 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 59950359 59950380 -59794518 + AT_rich Low_complexity Low_complexity 1 21 0 2460 77 0 0 chr13 59950626 59950936 -59793962 + AluY SINE Alu 1 310 -1 21 36 0 0 chr13 59950960 59950988 -59793910 + AT_rich Low_complexity Low_complexity 1 28 0 190 323 177 0 chr13 59952032 59952128 -59792770 - L2 LINE L2 0 3313 3201 256 333 56 40 chr13 59952489 59952687 -59792211 - L2 LINE L2 -560 2754 2554 216 275 58 75 chr13 59952718 59952838 -59792060 - L2 LINE L2 -896 2418 2301 534 229 79 24 chr13 59952874 59953100 -59791798 - MER106B DNA MER1_type 0 1059 1 270 335 149 19 chr13 59956326 59956541 -59788357 - MIR SINE MIR -9 253 11 243 192 19 0 chr13 59957141 59957193 -59787705 + (TG)n Simple_repeat Simple_repeat 1 53 0 192 170 0 0 chr13 59957209 59957262 -59787636 + (TA)n Simple_repeat Simple_repeat 2 54 0 598 197 0 24 chr13 59957360 59957487 -59787411 + FRAM SINE Alu 44 167 -9 29 78 0 0 chr13 59957633 59957697 -59787201 + AT_rich Low_complexity Low_complexity 1 64 0 4159 194 51 10 chr13 59958578 59959476 -59785422 - L1MC2 LINE L1 -15 6329 5395 612 237 111 5 chr13 59959480 59959670 -59785228 - MER34 LTR ERV1 0 542 333 842 251 57 5 chr13 59959705 59959916 -59784982 - MER34 LTR ERV1 -294 248 27 4603 259 49 25 chr13 59959922 59960835 -59784063 - L1MC2 LINE L1 -748 5398 4509 2359 82 3 10 chr13 59960835 59961139 -59783759 - AluSp SINE Alu -11 302 1 4603 259 49 25 chr13 59961139 59962446 -59782452 - L1MC2 LINE L1 -1637 4509 2944 24 32 0 0 chr13 59962852 59962883 -59782015 + AT_rich Low_complexity Low_complexity 1 31 0 282 271 129 18 chr13 59962901 59963071 -59781827 + MER117 DNA MER1_type 1 189 -8 2153 83 30 17 chr13 59963841 59964141 -59780757 - AluSq SINE Alu -9 304 1 351 316 19 39 chr13 59964294 59964449 -59780449 - MER5B DNA MER1_type -1 177 26 330 203 0 0 chr13 59966757 59966816 -59778082 - L2 LINE L2 -1 3312 3254 217 337 22 11 chr13 59967402 59967494 -59777404 + L2 LINE L2 2412 2504 -810 772 195 105 5 chr13 59967592 59967782 -59777116 + MER3 DNA MER1_type 1 209 0 205 347 116 31 chr13 59967925 59968150 -59776748 + L2 LINE L2 2835 3078 -194 24 0 0 0 chr13 59969307 59969331 -59775567 + AT_rich Low_complexity Low_complexity 1 24 0 204 125 0 0 chr13 59971148 59971180 -59773718 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr13 59971316 59971337 -59773561 + AT_rich Low_complexity Low_complexity 1 21 0 2120 122 0 3 chr13 59972264 59972559 -59772339 - AluSx SINE Alu -18 294 1 3263 112 23 19 chr13 59974165 59974646 -59770252 + MER1A DNA MER1_type 47 529 0 889 238 25 45 chr13 59975465 59975751 -59769147 - L1ME2 LINE L1 -138 6524 6245 920 230 29 47 chr13 59975782 59976166 -59768732 + MLT1C LTR MaLR 1 467 0 242 261 33 43 chr13 59976220 59976312 -59768586 - L1ME2 LINE L1 -550 6114 6024 * 247 275 202 5 chr13 59976306 59976499 -59768399 - L1ME2 LINE L1 -1092 5552 5322 2218 258 95 31 chr13 59976555 59977534 -59767364 - L1ME2 LINE L1 -1413 5231 4190 1380 295 39 5 chr13 59977625 59978185 -59766713 - L1ME2 LINE L1 -3238 3406 2828 407 277 101 21 chr13 59978201 59978252 -59766646 - L1ME2 LINE L1 -4171 2654 2608 1858 175 16 16 chr13 59978252 59978617 -59766281 + MLT1A1 LTR MaLR 1 365 0 407 277 101 21 chr13 59978617 59978753 -59766145 - L1ME2 LINE L1 -4217 2608 2452 1055 279 63 53 chr13 59978829 59979811 -59765087 - L1ME2 LINE L1 -4595 2230 1145 341 390 43 9 chr13 59980313 59980636 -59764262 - L1ME2 LINE L1 -5964 861 528 228 135 0 0 chr13 59980845 59980882 -59764016 + (TATG)n Simple_repeat Simple_repeat 3 39 0 399 192 39 85 chr13 59980882 59981012 -59763886 - L1MC4a LINE L1 -528 7280 7157 328 241 65 152 chr13 59982094 59982417 -59762481 - L2 LINE L2 0 3313 3019 473 274 78 0 chr13 59982581 59982734 -59762164 + L1MEc LINE L1 1664 1828 -4568 1324 216 101 0 chr13 59982772 59983160 -59761738 + L1MEc LINE L1 2047 2473 -3923 185 91 0 30 chr13 59984699 59984732 -59760166 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 186 103 0 0 chr13 59985595 59985624 -59759274 + (A)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr13 59985684 59985713 -59759185 + AT_rich Low_complexity Low_complexity 1 29 0 2340 100 0 0 chr13 59987637 59987947 -59756951 + AluSg SINE Alu 1 310 0 200 283 0 0 chr13 59987982 59988019 -59756879 + A-rich Low_complexity Low_complexity 1 40 -20 2274 112 0 10 chr13 59988019 59988332 -59756566 + AluSx SINE Alu 1 310 -2 200 283 0 0 chr13 59988332 59988354 -59756544 + A-rich Low_complexity Low_complexity 39 60 0 423 351 74 5 chr13 59988358 59988560 -59756338 - MIR SINE MIR 0 262 47 298 308 113 26 chr13 59988750 59988945 -59755953 - L2 LINE L2 0 3313 3102 2196 147 36 41 chr13 59988947 59989498 -59755400 + MLT2A2 LTR ERVL 1 554 0 820 292 115 7 chr13 59989500 59989897 -59755001 - L2 LINE L2 -209 3104 2664 1522 295 147 24 chr13 59990824 59991869 -59753029 + L2 LINE L2 2148 3313 0 562 130 0 0 chr13 59992036 59992128 -59752770 - AluSp/q SINE Alu -50 263 172 2047 143 107 6 chr13 59992321 59992684 -59752214 + MSTA LTR MaLR 1 400 -28 1708 153 7 7 chr13 59992684 59992966 -59751932 + AluSx SINE Alu 24 305 -7 293 296 197 30 chr13 59993197 59993430 -59751468 + L3 LINE CR1 183 454 -1123 260 335 50 43 chr13 59993994 59994155 -59750743 - L2 LINE L2 0 3272 3111 484 260 37 5 chr13 59994423 59994610 -59750288 + L1MA10 LINE L1 5981 6334 0 401 265 173 34 chr13 59994908 59995230 -59749668 + L1M4 LINE L1 5178 5565 -613 2574 48 0 3 chr13 59995230 59995540 -59749358 + AluY SINE Alu 1 309 -2 401 265 173 34 chr13 59995540 59995619 -59749279 + L1M4 LINE L1 5565 5632 -546 614 251 15 75 chr13 59995624 59995717 -59749181 - MIR SINE MIR -36 226 150 2338 155 139 5 chr13 59995717 59996162 -59748736 + MLT1D LTR MaLR 1 505 0 614 251 15 75 chr13 59996162 59996267 -59748631 - MIR SINE MIR -112 150 40 2175 101 10 16 chr13 59998258 59998564 -59746334 + AluSc SINE Alu 1 304 -5 22 0 0 0 chr13 59999673 59999695 -59745203 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr13 60000287 60000327 -59744571 + AT_rich Low_complexity Low_complexity 1 40 0 2118 103 0 26 chr13 60000615 60000925 -59743973 + AluSx SINE Alu 1 302 -10 259 298 83 12 chr13 60001358 60001442 -59743456 + MIR3 SINE MIR 83 172 -36 24 0 0 0 chr13 60002054 60002078 -59742820 + AT_rich Low_complexity Low_complexity 1 24 0 2088 116 10 0 chr13 60003846 60004140 -59740758 + AluSx SINE Alu 1 297 -15 1520 238 31 52 chr13 60004593 60005109 -59739789 + MLT1D LTR MaLR 1 505 0 255 333 0 0 chr13 60007328 60007385 -59737513 - MER2 DNA MER2_type -3 342 286 240 289 0 0 chr13 60007385 60007437 -59737461 + MER2 DNA MER2_type 286 337 -8 519 173 25 0 chr13 60007441 60007522 -59737376 - MER2 DNA MER2_type -261 84 2 2232 120 0 0 chr13 60007778 60008087 -59736811 + AluY SINE Alu 1 309 -2 776 239 89 81 chr13 60008162 60008531 -59736367 + L1M3e LINE L1 469 840 -6649 7517 224 59 35 chr13 60008771 60012465 -59732433 + L1M3e LINE L1 1877 5664 -1901 245 333 50 0 chr13 60013109 60013208 -59731690 + MIR SINE MIR 97 200 -62 335 248 66 16 chr13 60013788 60013909 -59730989 - MLT1I LTR MaLR -243 166 40 470 231 9 0 chr13 60015525 60015633 -59729265 - L1 LINE L1 -2295 4553 4445 269 316 44 29 chr13 60016859 60016995 -59727903 - MIR3 SINE MIR -17 191 54 765 207 37 159 chr13 60017247 60017518 -59727380 - MER8 DNA MER2_type 0 239 2 2394 75 0 0 chr13 60019107 60019401 -59725497 + AluY SINE Alu 1 294 -17 268 252 139 17 chr13 60021714 60021829 -59723069 + L2 LINE L2 2260 2388 -926 549 314 102 12 chr13 60021980 60022225 -59722673 - L2 LINE L2 -5 3308 3042 1075 292 44 35 chr13 60022236 60022691 -59722207 - L2 LINE L2 -609 2705 2247 474 361 62 21 chr13 60022731 60023022 -59721876 + L2 LINE L2 2542 2844 -470 5782 224 49 22 chr13 60023211 60024792 -59720106 - L1 LINE L1 -3999 2850 1227 1054 158 56 60 chr13 60024916 60025131 -59719767 + MER46A DNA MER2_type 23 236 0 261 319 82 26 chr13 60025147 60025438 -59719460 - L1M4 LINE L1 -1161 4985 4657 2283 103 0 25 chr13 60025438 60025757 -59719141 - AluSx SINE Alu -1 311 1 261 319 82 26 chr13 60025757 60025929 -59718969 - L1M4 LINE L1 -1489 4657 4496 309 340 80 5 chr13 60026077 60026277 -59718621 - L2 LINE L2 -1 3312 3098 2203 110 3 3 chr13 60026427 60026736 -59718162 - THE1B LTR MaLR -55 309 1 10747 96 10 57 chr13 60026736 60028395 -59716503 - THE1B-int LTR MaLR 0 1580 1 2476 108 14 3 chr13 60028395 60028755 -59716143 - THE1B LTR MaLR 0 364 1 206 222 0 0 chr13 60028784 60028829 -59716069 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 250 109 0 0 chr13 60028834 60028880 -59716018 + LTR66 LTR ERVL 394 439 -171 1110 111 64 0 chr13 60028954 60029126 -59715772 + MSTA LTR MaLR 1 183 -245 24 67 0 0 chr13 60029824 60029869 -59715029 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 60029943 60029964 -59714934 + AT_rich Low_complexity Low_complexity 1 21 0 2261 118 0 0 chr13 60030108 60030414 -59714484 - AluSq SINE Alu -5 308 3 1815 208 45 63 chr13 60030601 60031091 -59713807 + MLT1D LTR MaLR 25 505 0 283 247 59 35 chr13 60031169 60031254 -59713644 + MLT1L LTR MaLR 441 527 -88 361 261 57 80 chr13 60032776 60033040 -59711858 - L1MC4a LINE L1 -158 5963 5706 385 282 70 26 chr13 60033252 60033408 -59711490 - MIR3 SINE MIR -16 192 30 1826 169 0 7 chr13 60033976 60034271 -59710627 + AluJo SINE Alu 1 293 -19 462 308 143 8 chr13 60035242 60035508 -59709390 + L2 LINE L2 3012 3313 0 213 194 0 0 chr13 60037563 60037599 -59707299 + polypurine Low_complexity Low_complexity 2 37 0 915 180 0 18 chr13 60037630 60037797 -59707101 + AluSg/x SINE Alu 140 303 -9 182 189 108 0 chr13 60037927 60037964 -59706934 - L3 LINE CR1 -25 1552 1512 387 315 151 23 chr13 60038033 60038252 -59706646 - MIR SINE MIR 0 262 16 1329 192 26 58 chr13 60038491 60038803 -59706095 - AluJo SINE Alu 0 302 1 624 27 0 0 chr13 60038876 60038950 -59705948 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1626 214 132 9 chr13 60038953 60039378 -59705520 - LTR54B LTR ERV1 -21 477 1 859 254 5 19 chr13 60039555 60039764 -59705134 + MER58A DNA MER1_type 4 209 -15 181 369 82 57 chr13 60040044 60040166 -59704732 + L2 LINE L2 2619 2743 -571 27 0 0 0 chr13 60040171 60040198 -59704700 + AT_rich Low_complexity Low_complexity 1 27 0 2461 107 30 6 chr13 60041119 60041485 -59703413 + THE1C LTR MaLR 1 375 0 3161 187 79 1 chr13 60041767 60042415 -59702483 + L1MB5 LINE L1 5477 6174 0 423 273 74 0 chr13 60042864 60042985 -59701913 - L2 LINE L2 0 3313 3184 3025 243 97 24 chr13 60043154 60044389 -59700509 - L1MDa LINE L1 -5015 1525 17 203 312 140 46 chr13 60044395 60044680 -59700218 - L2 LINE L2 -1191 2123 1812 26 0 0 0 chr13 60045159 60045185 -59699713 + AT_rich Low_complexity Low_complexity 1 26 0 257 299 51 17 chr13 60046321 60046438 -59698460 - MIR SINE MIR -10 252 132 782 176 51 11 chr13 60047289 60047465 -59697433 - Charlie4a DNA MER1_type -6 502 320 436 353 18 40 chr13 60047523 60047798 -59697100 + LTR16B LTR ERVL 37 305 -159 1171 207 92 3 chr13 60047862 60048157 -59696741 - Charlie4a DNA MER1_type -184 324 4 21 36 0 0 chr13 60048422 60048450 -59696448 + AT_rich Low_complexity Low_complexity 1 28 0 732 172 8 0 chr13 60048820 60048942 -59695956 - FLAM_C SINE Alu -20 123 1 203 250 13 40 chr13 60049660 60049736 -59695162 - L3b LINE CR1 -355 1228 1155 289 362 9 17 chr13 60050866 60050982 -59693916 + L2 LINE L2 3194 3308 -5 1990 138 0 25 chr13 60052134 60052454 -59692444 - AluSx SINE Alu 0 312 1 1154 50 6 43 chr13 60054467 60054628 -59690270 - L1PA7 LINE L1 -2 6152 5998 26 64 0 0 chr13 60054785 60054832 -59690066 + AT_rich Low_complexity Low_complexity 1 47 0 605 339 66 61 chr13 60056717 60057228 -59687670 + L2 LINE L2 2718 3272 0 244 239 45 30 chr13 60057859 60057926 -59686972 + L2 LINE L2 3163 3230 -42 525 168 50 0 chr13 60060602 60060703 -59684195 - L1MC1 LINE L1 -6 6327 6222 227 307 0 40 chr13 60060748 60060823 -59684075 - MIR SINE MIR -79 183 112 665 209 56 56 chr13 60061402 60061598 -59683300 - MER3 DNA MER1_type -8 201 6 308 326 123 4 chr13 60061631 60061892 -59683006 + L2 LINE L2 1988 2279 -1035 411 322 78 63 chr13 60062587 60063012 -59681886 - L2 LINE L2 -592 2722 2292 348 347 87 73 chr13 60063010 60063310 -59681588 + L2 LINE L2 2964 3267 -5 * 238 380 50 0 chr13 60064556 60064677 -59680221 + L2 LINE L2 3137 3263 -9 190 289 0 77 chr13 60064845 60064897 -59680001 + L2 LINE L2 3214 3261 -11 907 70 70 8 chr13 60065073 60065202 -59679696 - MER85 DNA T2_type -2 137 1 253 200 18 0 chr13 60065275 60065330 -59679568 + MER116 DNA Mariner 25 80 0 626 253 191 48 chr13 60065477 60065833 -59679065 - L2 LINE L2 0 3313 2907 345 318 120 21 chr13 60066458 60066691 -59678207 + L1ME3A LINE L1 5558 5813 -1995 314 297 20 36 chr13 60066733 60066982 -59677916 - HAL1 LINE L1 -10 2497 2253 225 250 106 15 chr13 60067629 60067761 -59677137 + L1M4 LINE L1 2114 2257 -3889 246 286 34 0 chr13 60067791 60067910 -59676988 + L1ME3A LINE L1 5829 5951 -219 303 234 72 63 chr13 60067956 60068067 -59676831 + L1MC4a LINE L1 5986 6097 -1711 2079 151 0 0 chr13 60069191 60069495 -59675403 - AluSx SINE Alu -8 304 1 1881 139 30 7 chr13 60069845 60070146 -59674752 + AluSx SINE Alu 1 308 -4 2650 199 42 124 chr13 60070519 60071666 -59673232 - Charlie1 DNA MER1_type -386 2375 1 18231 29 0 0 chr13 60072501 60075450 -59669448 + L1PA2 LINE L1 3207 6155 0 28 0 0 0 chr13 60077234 60077262 -59667636 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr13 60077319 60077377 -59667521 + AT_rich Low_complexity Low_complexity 1 58 0 24 67 0 0 chr13 60078038 60078083 -59666815 + AT_rich Low_complexity Low_complexity 1 45 0 314 322 40 45 chr13 60078474 60078651 -59666247 - MIR SINE MIR -10 252 77 21 0 0 0 chr13 60080393 60080414 -59664484 + AT_rich Low_complexity Low_complexity 1 21 0 189 74 0 0 chr13 60080798 60080825 -59664073 + (A)n Simple_repeat Simple_repeat 1 27 0 234 0 0 0 chr13 60081664 60081690 -59663208 + (A)n Simple_repeat Simple_repeat 1 26 0 239 312 39 0 chr13 60082609 60082686 -59662212 - L2 LINE L2 -261 3011 2932 211 345 69 40 chr13 60082983 60083157 -59661741 - L2 LINE L2 -823 2491 2313 424 195 12 0 chr13 60083478 60083560 -59661338 - L2 LINE L2 -1 3312 3230 1444 240 128 33 chr13 60083574 60084145 -59660753 - L2 LINE L2 -830 2484 1860 2500 165 47 16 chr13 60084965 60085546 -59659352 - L1MA4A LINE L1 -23 6280 5625 277 347 71 0 chr13 60086341 60086439 -59658459 + L2 LINE L2 3191 3295 -18 28 29 0 0 chr13 60086909 60086944 -59657954 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 60087285 60087306 -59657592 + AT_rich Low_complexity Low_complexity 1 21 0 1017 254 114 17 chr13 60087439 60087860 -59657038 + LTR16B LTR ERVL 1 462 -2 674 133 0 0 chr13 60088289 60088394 -59656504 + L1MB3 LINE L1 6079 6183 0 798 229 57 24 chr13 60088957 60089167 -59655731 + LTR40a LTR ERVL 1 217 -302 517 318 31 49 chr13 60089871 60090157 -59654741 + MER89-int LTR ERV1 6205 6485 -316 * 670 258 29 52 chr13 60090038 60090311 -59654587 + HERVL40 LTR ERVL 2783 5454 -36 997 211 84 35 chr13 60090317 60090601 -59654297 + LTR40b LTR ERVL 164 461 -1 334 149 68 14 chr13 60091322 60091396 -59653502 + LTR67 LTR ERVL 477 554 -3 381 161 0 0 chr13 60091464 60091551 -59653347 + (TA)n Simple_repeat Simple_repeat 1 87 0 2135 84 3 27 chr13 60091551 60091847 -59653051 - AluY SINE Alu -22 289 1 1682 212 49 66 chr13 60092995 60093448 -59651450 + L1MB8 LINE L1 5657 6100 -78 2289 79 0 10 chr13 60093448 60093740 -59651158 - AluY SINE Alu -14 297 9 1682 212 49 66 chr13 60093740 60093818 -59651080 + L1MB8 LINE L1 6100 6178 0 328 274 7 30 chr13 60094563 60094698 -59650200 + GA-rich Low_complexity Low_complexity 1 132 0 2233 101 3 0 chr13 60095022 60095318 -59649580 - AluSx SINE Alu -15 297 1 566 220 23 23 chr13 60095507 60095639 -59649259 + MER5B DNA MER1_type 1 132 -46 2240 74 0 11 chr13 60096080 60096386 -59648512 + AluY SINE Alu 1 303 0 369 229 36 0 chr13 60096736 60096819 -59648079 - MIR SINE MIR -15 247 162 855 266 12 43 chr13 60096825 60097081 -59647817 - MIR SINE MIR -7 255 8 29 28 0 0 chr13 60097144 60097180 -59647718 + AT_rich Low_complexity Low_complexity 1 36 0 300 327 19 32 chr13 60097320 60097476 -59647422 + GA-rich Low_complexity Low_complexity 3 156 0 21 0 0 0 chr13 60098456 60098477 -59646421 + AT_rich Low_complexity Low_complexity 1 21 0 2288 96 3 0 chr13 60098792 60099095 -59645803 + AluSp SINE Alu 1 304 -9 1047 170 162 8 chr13 60099368 60099627 -59645271 - MER33 DNA MER1_type 0 324 26 1034 64 0 0 chr13 60100144 60100269 -59644629 - AluSc SINE Alu -184 125 1 857 307 91 33 chr13 60100280 60100885 -59644013 - L2 LINE L2 -962 2352 1713 22 35 0 0 chr13 60102881 60102910 -59641988 + AT_rich Low_complexity Low_complexity 1 29 0 1477 298 138 69 chr13 60104620 60105678 -59639220 + L1MC4a LINE L1 5766 6896 -912 822 219 6 11 chr13 60105680 60105863 -59639035 + L1MB5 LINE L1 5986 6167 -7 5970 152 51 31 chr13 60105878 60107924 -59636974 + L1PB3 LINE L1 4061 6151 -3 24 32 0 0 chr13 60107924 60107955 -59636943 + AT_rich Low_complexity Low_complexity 1 31 0 516 269 101 29 chr13 60108066 60108274 -59636624 + L1ME3A LINE L1 5924 6146 -24 28 29 0 0 chr13 60109701 60109736 -59635162 + AT_rich Low_complexity Low_complexity 1 35 0 718 67 0 0 chr13 60110055 60110145 -59634753 + AluSc SINE Alu 201 290 -19 766 308 28 53 chr13 60110186 60110470 -59634428 + L2 LINE L2 2391 2658 -656 1911 152 16 34 chr13 60110470 60110852 -59634046 + THE1C LTR MaLR 1 375 0 766 308 28 53 chr13 60110852 60111074 -59633824 + L2 LINE L2 2658 2884 -430 815 190 155 0 chr13 60111808 60111982 -59632916 - MER3 DNA MER1_type -1 208 8 2153 155 63 24 chr13 60112080 60112492 -59632406 - MSTA LTR MaLR 0 428 1 8813 166 25 21 chr13 60112493 60112810 -59632088 - MSTA-int LTR MaLR -1 1650 1336 2108 92 58 7 chr13 60112810 60113104 -59631794 - AluSc SINE Alu 0 309 1 8813 166 25 21 chr13 60113104 60114430 -59630468 - MSTA-int LTR MaLR -315 1336 1 2121 178 64 5 chr13 60114430 60114834 -59630064 - MSTA LTR MaLR 0 428 1 210 71 0 0 chr13 60115515 60115543 -59629355 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1934 171 3 0 chr13 60115543 60115842 -59629056 - 7SLRNA srpRNA srpRNA -20 300 1 192 167 0 45 chr13 60116117 60116183 -59628715 + (TA)n Simple_repeat Simple_repeat 1 63 0 700 229 101 11 chr13 60117388 60117576 -59627322 + MER3 DNA MER1_type 1 205 -4 211 172 17 17 chr13 60117628 60117686 -59627212 + A-rich Low_complexity Low_complexity 2 59 0 253 186 134 41 chr13 60117968 60118065 -59626833 + L1MEd LINE L1 1152 1257 -4862 319 329 58 13 chr13 60118067 60118222 -59626676 + HAL1 LINE L1 1371 1532 -975 310 337 53 0 chr13 60119295 60119390 -59625508 - L2 LINE L2 0 3313 3214 12920 126 34 20 chr13 60119655 60120659 -59624239 - Tigger1 DNA MER2_type 0 2418 1429 2107 105 0 7 chr13 60120659 60120954 -59623944 + AluSq SINE Alu 1 293 -20 12920 126 34 20 chr13 60120954 60122341 -59622557 - Tigger1 DNA MER2_type -989 1429 2 430 252 94 31 chr13 60122434 60122561 -59622337 + L2 LINE L2 3179 3313 0 23 68 0 0 chr13 60123233 60123277 -59621621 + AT_rich Low_complexity Low_complexity 1 44 0 573 193 71 29 chr13 60123421 60123561 -59621337 + MER63 DNA MER1_type 1 772 -64 1827 143 7 26 chr13 60124012 60124319 -59620579 + AluJo SINE Alu 3 303 -9 413 301 72 43 chr13 60124977 60125367 -59619531 - L1MD1 LINE L1 -321 5921 5507 3888 135 33 2 chr13 60125505 60126141 -59618757 - L1PA15 LINE L1 0 6165 5510 451 84 0 0 chr13 60126241 60126312 -59618586 + Alu SINE Alu 237 307 -4 208 358 63 11 chr13 60126805 60126900 -59617998 + L2 LINE L2 3158 3257 -15 1836 127 4 0 chr13 60126901 60127161 -59617737 - AluSq SINE Alu -39 274 14 237 337 84 0 chr13 60127327 60127422 -59617476 - L2 LINE L2 -5 3308 3206 276 185 0 0 chr13 60128185 60128239 -59616659 - MER53 DNA DNA -2 187 134 575 288 56 105 chr13 60129691 60130083 -59614815 - L2 LINE L2 0 3313 2941 249 200 91 0 chr13 60130076 60130131 -59614767 - L2 LINE L2 -505 2809 2750 * 22 56 0 0 chr13 60130727 60130763 -59614135 + AT_rich Low_complexity Low_complexity 1 36 0 1991 103 61 66 chr13 60130769 60131094 -59613804 + THE1C LTR MaLR 1 325 -50 2264 103 6 0 chr13 60131094 60131405 -59613493 + AluSp SINE Alu 1 313 0 1991 103 61 66 chr13 60131405 60131456 -59613442 + THE1C LTR MaLR 325 375 0 266 261 0 0 chr13 60131595 60131664 -59613234 - L1ME LINE L1 -341 5780 5712 315 279 79 24 chr13 60131945 60132110 -59612788 - HAL1 LINE L1 -92 2415 2242 6436 58 1 4 chr13 60132344 60133172 -59611726 + L1PA7 LINE L1 5329 6154 0 772 238 72 21 chr13 60133191 60133891 -59611007 + L1ME LINE L1 4457 5233 -913 991 248 116 47 chr13 60133924 60134348 -59610550 - LTR40b LTR ERVL -7 455 3 899 219 166 4 chr13 60134350 60134696 -59610202 + L1ME LINE L1 5237 5634 -530 1171 218 125 3 chr13 60134706 60135091 -59609807 + L1ME1 LINE L1 5500 5927 -239 295 337 118 70 chr13 60135567 60135803 -59609095 - L2 LINE L2 -6 3266 3043 1551 219 0 13 chr13 60135803 60136118 -59608780 + AluJo SINE Alu 1 311 -1 295 337 118 70 chr13 60136118 60136323 -59608575 - L2 LINE L2 -229 3043 2804 302 269 130 19 chr13 60136336 60136444 -59608454 + MER58C DNA MER1_type 12 131 -84 388 175 67 0 chr13 60136473 60136565 -59608333 + MER58 DNA MER1_type 134 2420 0 920 341 32 8 chr13 60136566 60136941 -59607957 - L2 LINE L2 -507 2807 2424 1809 301 136 36 chr13 60136951 60137239 -59607659 - L2 LINE L2 -1409 1905 1647 2147 123 13 0 chr13 60137239 60137541 -59607357 + AluSq SINE Alu 1 306 -7 1809 301 136 36 chr13 60137541 60138433 -59606465 - L2 LINE L2 -1667 1647 608 289 324 49 0 chr13 60138454 60138556 -59606342 + L2 LINE L2 3125 3231 -41 2013 88 4 0 chr13 60138629 60138891 -59606007 + AluSx SINE Alu 50 312 0 25 31 0 0 chr13 60138891 60138923 -59605975 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr13 60142070 60142101 -59602797 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 60142159 60142182 -59602716 + AT_rich Low_complexity Low_complexity 1 23 0 432 0 0 0 chr13 60142455 60142503 -59602395 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1603 181 0 4 chr13 60142506 60142776 -59602122 - AluJo SINE Alu -32 280 12 246 303 42 7 chr13 60143040 60143182 -59601716 + GA-rich Low_complexity Low_complexity 5 151 0 694 224 68 49 chr13 60143819 60144024 -59600874 - MER63A DNA MER1_type 0 210 2 216 0 0 0 chr13 60144236 60144260 -59600638 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 239 288 0 0 chr13 60144510 60144576 -59600322 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2209 94 3 3 chr13 60144612 60144910 -59599988 + AluSq SINE Alu 1 298 -15 195 197 45 45 chr13 60146205 60146271 -59598627 - L3 LINE CR1 -1093 484 419 27 29 0 0 chr13 60147079 60147113 -59597785 + AT_rich Low_complexity Low_complexity 1 34 0 1631 180 14 4 chr13 60147876 60148154 -59596744 - AluJo SINE Alu -31 281 1 314 387 40 8 chr13 60148163 60148287 -59596611 - L2 LINE L2 -20 3252 3125 607 238 95 65 chr13 60148602 60148833 -59596065 + MLT1E2 LTR MaLR 17 254 -372 1733 126 11 15 chr13 60148836 60149105 -59595793 + AluSq SINE Alu 5 272 -41 458 116 14 0 chr13 60149106 60149175 -59595723 + AluJ/FRAM SINE Alu 232 301 -11 626 307 21 26 chr13 60149176 60149368 -59595530 + MLT1E2 LTR MaLR 243 433 -193 2024 236 46 9 chr13 60149371 60149917 -59594981 - L1M4 LINE L1 -1605 4541 3976 720 218 111 90 chr13 60149917 60150294 -59594604 - MLT1B LTR MaLR 0 390 6 1024 235 50 53 chr13 60150297 60150842 -59594056 - L1M4 LINE L1 -2169 3977 3325 670 124 95 114 chr13 60150885 60150928 -59593970 - L1MDa LINE L1 -4794 1746 1704 2139 125 0 0 chr13 60150928 60151225 -59593673 - AluSx SINE Alu -15 297 1 670 124 95 114 chr13 60151225 60151342 -59593556 - L1MDa LINE L1 -4836 1704 1588 2360 77 3 3 chr13 60151342 60151642 -59593256 - AluSx SINE Alu -8 304 5 670 124 95 114 chr13 60151642 60151690 -59593208 - L1MDa LINE L1 -4952 1588 1541 498 214 14 14 chr13 60151797 60151937 -59592961 - L1 LINE L1 -1648 4498 4359 382 251 103 23 chr13 60152206 60152381 -59592517 + MLT1K LTR MaLR 399 587 -1 235 304 168 19 chr13 60153193 60153354 -59591544 + L2 LINE L2 1233 1417 -1897 253 0 54 0 chr13 60153477 60153514 -59591384 + (CTAAT)n Simple_repeat Simple_repeat 3 41 0 205 162 0 0 chr13 60154491 60154528 -59590370 - MIR SINE MIR -69 193 157 323 191 209 17 chr13 60154546 60154661 -59590237 + L1ME4a LINE L1 5969 6105 -16 2040 132 0 0 chr13 60154688 60154984 -59589914 + AluSx SINE Alu 1 296 -16 181 300 14 29 chr13 60155062 60155132 -59589766 - MIR3 SINE MIR -8 200 132 489 321 122 25 chr13 60156466 60156990 -59587908 - L1MC4a LINE L1 -1976 5832 5258 35 78 0 0 chr13 60160345 60160422 -59584476 + AT_rich Low_complexity Low_complexity 1 77 0 459 262 99 12 chr13 60160578 60160750 -59584148 + MLT1K LTR MaLR 364 550 -38 202 214 0 43 chr13 60163806 60163876 -59581022 + A-rich Low_complexity Low_complexity 3 69 0 311 296 93 12 chr13 60163915 60164087 -59580811 + HAL1b LINE L1 59 244 -1104 365 270 63 13 chr13 60164250 60164409 -59580489 + HAL1b LINE L1 468 634 -714 981 209 195 23 chr13 60164641 60165077 -59579821 + L1MC5 LINE L1 6650 7160 -801 556 247 70 6 chr13 60165096 60165254 -59579644 + L1MC5 LINE L1 7256 7423 -538 793 191 40 35 chr13 60165387 60165560 -59579338 + AluJo SINE Alu 104 277 -35 423 56 0 0 chr13 60165560 60165614 -59579284 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 432 37 0 0 chr13 60165644 60165698 -59579200 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 276 239 152 22 chr13 60165837 60165975 -59578923 + L1ME3A LINE L1 6010 6165 -5 273 243 261 0 chr13 60165992 60166103 -59578795 + MIR3 SINE MIR 48 187 -21 284 238 36 0 chr13 60166716 60166800 -59578098 - Tigger1 DNA MER2_type -1350 1068 982 489 299 28 23 chr13 60167072 60167249 -59577649 - MER5B DNA MER1_type 0 178 1 1905 154 51 12 chr13 60168546 60168877 -59576021 + MER2 DNA MER2_type 1 344 0 203 128 0 51 chr13 60169057 60169096 -59575802 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2004 128 0 0 chr13 60170287 60170569 -59574329 - AluSx SINE Alu -30 282 1 32 67 0 0 chr13 60171081 60171141 -59573757 + AT_rich Low_complexity Low_complexity 1 60 0 1583 143 42 0 chr13 60172997 60173235 -59571663 - AluJb SINE Alu -64 248 1 1456 192 11 4 chr13 60173480 60173751 -59571147 - AluJo SINE Alu -2 310 38 334 315 68 6 chr13 60173763 60173917 -59570981 - MIR SINE MIR -63 145 32 2521 37 3 0 chr13 60174018 60174314 -59570584 + AluY SINE Alu 1 297 -14 310 200 75 12 chr13 60176656 60176736 -59568162 + MER20B DNA MER1_type 37 121 -662 1095 204 146 46 chr13 60176857 60177234 -59567664 - MER66A LTR ERV1 0 478 97 21 0 0 0 chr13 60177264 60177285 -59567613 + AT_rich Low_complexity Low_complexity 1 21 0 796 267 133 29 chr13 60177385 60177838 -59567060 + MER20B DNA MER1_type 269 768 -15 2735 157 39 64 chr13 60178127 60178693 -59566205 + MLT2B3 LTR ERVL 1 552 -2 2544 153 16 12 chr13 60178847 60179277 -59565621 + MSTB1 LTR MaLR 1 432 0 222 268 0 18 chr13 60179422 60179478 -59565420 + GA-rich Low_complexity Low_complexity 2 56 0 413 286 130 7 chr13 60179807 60179961 -59564937 - LTR16A1 LTR ERVL 0 457 285 606 214 16 8 chr13 60180047 60180173 -59564725 - LTR16A1 LTR ERVL -330 127 1 201 161 32 32 chr13 60180218 60180280 -59564618 + (AATAG)n Simple_repeat Simple_repeat 4 65 0 1110 150 60 0 chr13 60180820 60181020 -59563878 - Tigger5 DNA MER2_type 0 2323 2112 1333 216 63 11 chr13 60181020 60181307 -59563591 - Tigger5 DNA MER2_type -2016 307 6 603 0 0 0 chr13 60181557 60181624 -59563274 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 514 130 83 9 chr13 60181625 60181733 -59563165 + L1MD3 LINE L1 6901 7016 -979 273 189 19 0 chr13 60181725 60181778 -59563120 - L1MD3 LINE L1 -726 7269 7216 * 2549 201 51 14 chr13 60181785 60182351 -59562547 + L1MD3 LINE L1 7408 7994 -1 318 268 163 0 chr13 60182758 60182881 -59562017 - MIR SINE MIR -32 230 88 1228 99 21 21 chr13 60183093 60183285 -59561613 - MER30 DNA MER1_type -38 192 1 271 284 65 30 chr13 60183295 60183527 -59561371 + L2 LINE L2 733 972 -2342 254 350 94 26 chr13 60183780 60184046 -59560852 + L2 LINE L2 1525 1808 -1506 193 361 0 0 chr13 60184026 60184098 -59560800 + L2 LINE L2 3237 3308 -5 * 330 190 116 58 chr13 60184936 60185057 -59559841 + L3 LINE CR1 640 767 -810 333 0 0 0 chr13 60186216 60186253 -59558645 + (CA)n Simple_repeat Simple_repeat 1 37 0 2360 69 0 28 chr13 60186467 60186787 -59558111 + AluY SINE Alu 1 311 0 291 282 123 44 chr13 60187850 60188077 -59556821 + L1ME LINE L1 4741 4985 -1161 642 256 61 35 chr13 60188086 60188552 -59556346 + L1ME LINE L1 5030 5508 -658 * 1204 255 86 0 chr13 60188544 60188893 -59556005 + L1MC4 LINE L1 7524 7902 -140 2161 125 10 0 chr13 60189992 60190295 -59554603 + AluSx SINE Alu 1 306 -6 672 154 51 0 chr13 60190914 60191031 -59553867 + MLT1E2 LTR MaLR 504 626 0 21 0 0 0 chr13 60192513 60192534 -59552364 + AT_rich Low_complexity Low_complexity 1 21 0 1677 135 71 28 chr13 60193119 60193401 -59551497 + MER1B DNA MER1_type 46 339 0 25 0 0 0 chr13 60193985 60194010 -59550888 + AT_rich Low_complexity Low_complexity 1 25 0 1402 256 74 56 chr13 60196359 60196926 -59547972 + MLT1E2 LTR MaLR 3 579 -47 556 115 35 0 chr13 60197053 60197140 -59547758 + HY4 scRNA scRNA 1 90 -3 264 220 120 50 chr13 60197598 60197698 -59547200 + HAL1b LINE L1 768 874 -474 528 254 275 39 chr13 60197787 60198173 -59546725 + MLT1F LTR MaLR 1 477 -65 32 67 0 0 chr13 60198178 60198238 -59546660 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr13 60198726 60198749 -59546149 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 60198756 60198808 -59546090 + AT_rich Low_complexity Low_complexity 1 52 0 189 186 51 51 chr13 60200169 60200228 -59544670 - MIR SINE MIR -111 151 93 513 194 48 16 chr13 60200553 60200677 -59544221 - MIR SINE MIR -117 145 18 896 199 101 11 chr13 60202281 60202612 -59542286 - MLT1D LTR MaLR -8 497 83 1086 171 76 19 chr13 60202621 60202986 -59541912 - LTR48 LTR ERV1 -74 713 135 298 244 174 17 chr13 60202955 60203070 -59541828 - MER39 LTR ERV1 -574 133 1 * 286 273 111 62 chr13 60203089 60203219 -59541679 - MLT1L LTR MaLR -28 587 465 198 0 0 0 chr13 60203219 60203241 -59541657 + (TA)n Simple_repeat Simple_repeat 2 23 0 2211 109 0 10 chr13 60203241 60203545 -59541353 - AluSx SINE Alu -11 301 1 286 273 111 62 chr13 60203545 60203702 -59541196 - MLT1L LTR MaLR -149 466 285 2357 241 45 34 chr13 60203703 60204505 -59540393 - L1ME LINE L1 -5182 888 78 271 250 52 21 chr13 60204570 60204666 -59540232 - MLT1L LTR MaLR -326 289 191 234 0 0 0 chr13 60205207 60205233 -59539665 + (A)n Simple_repeat Simple_repeat 1 26 0 463 208 21 21 chr13 60205242 60205338 -59539560 - MLT1D LTR MaLR -409 96 1 2219 126 7 0 chr13 60205644 60205954 -59538944 + AluSx SINE Alu 1 312 0 869 274 20 0 chr13 60205959 60206156 -59538742 + MIR SINE MIR 30 230 -32 2501 62 3 0 chr13 60206244 60206551 -59538347 + AluY SINE Alu 1 308 -3 318 294 172 37 chr13 60207839 60208002 -59536896 + L1MEd LINE L1 562 746 -5373 331 266 71 24 chr13 60208005 60208257 -59536641 + L1MEd LINE L1 770 1033 -5086 26 0 0 0 chr13 60208750 60208776 -59536122 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 60209038 60209063 -59535835 + AT_rich Low_complexity Low_complexity 1 25 0 483 370 74 37 chr13 60209138 60209462 -59535436 - L2 LINE L2 0 3272 2937 328 337 163 5 chr13 60209922 60210124 -59534774 + L2 LINE L2 171 404 -2910 330 357 0 26 chr13 60210144 60210298 -59534600 + L2 LINE L2 530 679 -2635 880 213 138 79 chr13 60210310 60210738 -59534160 + Charlie4a DNA MER1_type 1 453 -55 * 1059 227 151 10 chr13 60210736 60211027 -59533871 - MLT1F LTR MaLR -5 537 206 259 307 0 0 chr13 60211766 60211841 -59533057 - L2 LINE L2 0 3313 3239 1660 224 59 55 chr13 60211852 60211917 -59532981 - MLT1F LTR MaLR -7 535 472 2668 32 3 3 chr13 60211917 60212227 -59532671 - AluYa5 SINE Alu -1 310 1 1660 224 59 55 chr13 60212227 60212625 -59532273 - MLT1F LTR MaLR -70 472 80 355 297 23 59 chr13 60212628 60212847 -59532051 - L2 LINE L2 -64 3249 3039 239 300 80 40 chr13 60212921 60213021 -59531877 - MIR SINE MIR -145 117 14 21 36 0 0 chr13 60213464 60213492 -59531406 + AT_rich Low_complexity Low_complexity 1 28 0 207 255 0 0 chr13 60214247 60214298 -59530600 + CT-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr13 60214535 60214556 -59530342 + AT_rich Low_complexity Low_complexity 1 21 0 266 300 0 0 chr13 60214770 60214830 -59530068 + L2 LINE L2 3200 3259 -13 644 204 23 122 chr13 60215554 60215775 -59529123 - L1MEc LINE L1 -4612 1784 1586 2423 175 39 25 chr13 60215776 60216285 -59528613 + Tigger2 DNA MER2_type 1 516 -2202 243 0 0 0 chr13 60216562 60216589 -59528309 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 324 0 0 0 chr13 60216588 60216624 -59528274 + (CA)n Simple_repeat Simple_repeat 1 36 0 403 326 56 22 chr13 60218934 60219112 -59525786 + MIR SINE MIR 32 215 -47 999 233 97 26 chr13 60219130 60219439 -59525459 - MER90 LTR ERV1 -27 548 218 1336 185 161 48 chr13 60219457 60219873 -59525025 - LTR54B LTR ERV1 -35 463 1 1183 213 24 8 chr13 60219879 60220128 -59524770 - MER90 LTR ERV1 -361 253 1 444 318 29 18 chr13 60220600 60220846 -59524052 + L1M4 LINE L1 5433 5692 -492 3981 157 70 85 chr13 60220882 60221796 -59523102 + MER21A LTR ERV1 13 914 -17 2278 57 17 20 chr13 60221796 60222096 -59522802 - AluSc SINE Alu -10 299 1 3981 157 70 85 chr13 60222096 60222114 -59522784 + MER21A LTR ERV1 914 931 0 204 211 35 18 chr13 60222303 60222360 -59522538 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1092 153 16 5 chr13 60223373 60223562 -59521336 - MER20 DNA MER1_type -1 218 28 1462 175 94 29 chr13 60223563 60223733 -59521165 - L1M4 LINE L1 -377 5807 5649 1663 160 100 62 chr13 60223733 60224030 -59520868 - MER31B LTR ERV1 0 466 145 2252 119 0 6 chr13 60224030 60224341 -59520557 + AluSx SINE Alu 1 309 -3 1663 160 100 62 chr13 60224341 60224492 -59520406 - MER31B LTR ERV1 -321 145 1 1462 175 94 29 chr13 60224492 60224663 -59520235 - L1M4 LINE L1 -535 5649 5444 875 229 0 6 chr13 60224672 60224851 -59520047 + MER58A DNA MER1_type 47 224 0 29 0 0 0 chr13 60225157 60225186 -59519712 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr13 60228840 60228879 -59516019 + AT_rich Low_complexity Low_complexity 1 39 0 899 200 100 5 chr13 60229220 60229410 -59515488 - AluJb SINE Alu -19 293 86 225 300 283 17 chr13 60230692 60230929 -59513969 - L2 LINE L2 -1 3271 2972 26 0 0 0 chr13 60231123 60231149 -59513749 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 60231411 60231436 -59513462 + AT_rich Low_complexity Low_complexity 1 25 0 1205 170 10 0 chr13 60232003 60232197 -59512701 - MER7A DNA MER2_type 0 346 151 735 188 8 0 chr13 60232278 60232406 -59512492 - MLT1A1 LTR MaLR -162 203 75 825 161 35 0 chr13 60232636 60232779 -59512119 - MER7A DNA MER2_type -198 148 3 378 206 129 52 chr13 60234352 60234507 -59510391 + MER106B DNA MER1_type 40 1029 -30 1929 106 3 38 chr13 60234510 60234831 -59510067 - AluSx SINE Alu 0 311 1 506 193 57 43 chr13 60235447 60235587 -59509311 + MIR SINE MIR 81 222 -40 374 299 153 0 chr13 60236193 60236330 -59508568 - MIR SINE MIR -1 261 104 1859 164 0 10 chr13 60236487 60236786 -59508112 + AluJb SINE Alu 1 296 -16 494 133 33 11 chr13 60236935 60237025 -59507873 - MER41B LTR ERV1 -86 549 458 1761 174 6 22 chr13 60237026 60237343 -59507555 - AluJb SINE Alu 0 312 1 253 127 0 19 chr13 60238011 60238070 -59506828 - Alu SINE Alu -12 290 254 984 181 16 0 chr13 60238302 60238495 -59506403 + MER3 DNA MER1_type 14 209 0 491 350 105 43 chr13 60238495 60239027 -59505871 + L2 LINE L2 2215 2779 -535 2303 59 17 10 chr13 60241151 60241439 -59503459 - AluY SINE Alu -19 292 3 219 253 222 20 chr13 60241645 60241744 -59503154 + MIR SINE MIR 59 177 -85 500 279 34 45 chr13 60242479 60242658 -59502240 - MER5B DNA MER1_type -1 177 1 489 299 51 6 chr13 60243348 60243525 -59501373 - MIR SINE MIR -76 186 2 1671 147 39 39 chr13 60243754 60244066 -59500832 + AluJo SINE Alu 1 312 0 723 295 100 47 chr13 60244681 60245174 -59499724 + L2 LINE L2 2766 3313 0 182 256 147 31 chr13 60245333 60245462 -59499436 + L2 LINE L2 3106 3249 -64 329 255 39 10 chr13 60246227 60246329 -59498569 - L1ME4a LINE L1 -177 5944 5840 480 273 83 9 chr13 60246346 60246562 -59498336 - L1ME4a LINE L1 -339 5782 5551 342 303 0 0 chr13 60246707 60246803 -59498095 - MIR SINE MIR -64 144 54 1543 181 38 44 chr13 60246959 60247230 -59497668 - L1MB8 LINE L1 -89 6089 5819 1849 166 0 22 chr13 60247230 60247543 -59497355 - AluJo SINE Alu -1 311 6 1543 181 38 44 chr13 60247543 60247636 -59497262 - L1MB8 LINE L1 -359 5819 5727 317 318 95 24 chr13 60247936 60248062 -59496836 + L2 LINE L2 3137 3271 -1 254 242 111 88 chr13 60248517 60248680 -59496218 + MIR SINE MIR 17 181 -81 397 239 18 127 chr13 60249698 60249982 -59494916 + MER112 DNA MER1_type 1 253 -3 310 253 27 0 chr13 60250070 60250145 -59494753 + MIR SINE MIR 48 124 -138 3580 106 15 11 chr13 60250248 60250788 -59494110 + L1PA13 LINE L1 5620 6161 -2 937 208 101 40 chr13 60250789 60251265 -59493633 - L1ME1 LINE L1 -9 6157 5566 1594 225 156 57 chr13 60251319 60252182 -59492716 - L1ME1 LINE L1 -2663 3483 2535 180 0 0 0 chr13 60252477 60252497 -59492401 + (A)n Simple_repeat Simple_repeat 1 20 0 2571 27 0 17 chr13 60252659 60252958 -59491940 + AluY SINE Alu 2 295 -16 1898 121 71 0 chr13 60253747 60254028 -59490870 - AluSx SINE Alu -11 301 1 391 295 35 35 chr13 60254159 60254332 -59490566 - MER5A DNA MER1_type -15 174 2 273 119 0 0 chr13 60254759 60254801 -59490097 + (GGAGAA)n Simple_repeat Simple_repeat 4 45 0 1852 112 112 7 chr13 60256528 60256806 -59488092 + AluSg1 SINE Alu 1 307 -2 220 231 11 77 chr13 60257214 60257305 -59487593 + GA-rich Low_complexity Low_complexity 2 86 0 576 282 42 7 chr13 60257328 60257470 -59487428 + MER45A DNA AcHobo 1 147 -31 307 274 11 0 chr13 60257541 60257636 -59487262 + MLT1K LTR MaLR 493 588 0 46 0 0 0 chr13 60257876 60257922 -59486976 + AT_rich Low_complexity Low_complexity 1 46 0 225 152 13 25 chr13 60257933 60258012 -59486886 + (TA)n Simple_repeat Simple_repeat 2 79 0 201 241 0 0 chr13 60258091 60258145 -59486753 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 1592 194 3 10 chr13 60258145 60258433 -59486465 - AluJo SINE Alu -26 286 1 1932 117 0 0 chr13 60258500 60258765 -59486133 + AluSg SINE Alu 42 306 -4 1652 189 3 3 chr13 60259355 60259646 -59485252 + MLT1A1 LTR MaLR 75 365 0 2912 9 0 0 chr13 60260392 60260710 -59484188 - AluYb8 SINE Alu 0 318 1 1414 139 26 134 chr13 60260961 60261350 -59483548 + MER7A DNA MER2_type 2 346 0 588 336 14 5 chr13 60262034 60262242 -59482656 + LTR33 LTR ERVL 1 210 -311 866 231 39 0 chr13 60262254 60262457 -59482441 + MER106A DNA MER1_type 6 216 -20 21 36 0 0 chr13 60262944 60262972 -59481926 + AT_rich Low_complexity Low_complexity 1 28 0 1808 155 0 36 chr13 60263050 60263354 -59481544 + AluJo SINE Alu 6 298 -14 2099 115 3 14 chr13 60263383 60263679 -59481219 - AluSx SINE Alu -19 293 1 351 65 0 0 chr13 60265496 60265542 -59479356 + (CA)n Simple_repeat Simple_repeat 2 47 0 1073 148 65 17 chr13 60265579 60265689 -59479209 + L1MA9 LINE L1 6050 6153 -159 327 25 0 0 chr13 60265689 60265729 -59479169 + (CA)n Simple_repeat Simple_repeat 1 40 0 1073 148 65 17 chr13 60265729 60265848 -59479050 + L1MA9 LINE L1 6153 6290 -22 943 158 7 13 chr13 60266867 60267019 -59477879 + FRAM SINE Alu 1 150 -26 388 333 46 47 chr13 60267029 60267277 -59477621 + L1ME4a LINE L1 5313 5559 -562 859 166 0 0 chr13 60267333 60267490 -59477408 - L1 LINE L1 -3137 3009 2853 245 237 102 0 chr13 60267490 60267549 -59477349 - Tigger1 DNA MER2_type 0 2418 2354 10831 108 13 15 chr13 60267563 60268292 -59476606 - Tigger1 DNA MER2_type -307 2111 1382 2265 101 0 3 chr13 60268292 60268598 -59476300 + AluSc SINE Alu 1 305 -4 10831 108 13 15 chr13 60268598 60269505 -59475393 - Tigger1 DNA MER2_type -1036 1382 479 189 0 0 0 chr13 60269509 60269530 -59475368 + (T)n Simple_repeat Simple_repeat 1 21 0 788 214 14 0 chr13 60269548 60269693 -59475205 - AluJo SINE Alu -83 229 83 2897 141 16 40 chr13 60269693 60270198 -59474700 - Tigger1 DNA MER2_type -1925 493 1 248 177 48 0 chr13 60270199 60270261 -59474637 - L1 LINE L1 -3293 2853 2789 469 133 44 0 chr13 60270266 60270356 -59474542 + L1MA5 LINE L1 6202 6295 -5 369 356 5 5 chr13 60270417 60270625 -59474273 + L1ME4a LINE L1 5612 5819 -343 2335 106 3 0 chr13 60270805 60271108 -59473790 - AluSx SINE Alu -8 304 1 2535 186 10 29 chr13 60271499 60272014 -59472884 - MLT1D LTR MaLR 0 505 1 336 304 49 52 chr13 60272535 60272662 -59472236 + L1ME4a LINE L1 5835 5961 -160 770 206 0 0 chr13 60272662 60272793 -59472105 - FLAM_A SINE Alu -2 131 1 336 304 49 52 chr13 60272793 60272951 -59471947 + L1ME4a LINE L1 5961 6119 -2 381 260 94 0 chr13 60273062 60273158 -59471740 + MIR SINE MIR 49 153 -109 182 262 82 0 chr13 60273187 60273248 -59471650 - MIR SINE MIR -54 208 143 2212 118 3 9 chr13 60273793 60274108 -59470790 + AluSp SINE Alu 1 313 0 978 189 49 70 chr13 60274214 60274499 -59470399 - MER46C DNA MER2_type -10 328 50 1756 169 25 0 chr13 60275103 60275381 -59469517 + AluJb SINE Alu 1 285 -27 1130 154 4 30 chr13 60275641 60275875 -59469023 + SVA Other Other 450 677 -709 335 282 153 15 chr13 60275987 60276118 -59468780 - MIR SINE MIR -78 184 36 22 0 0 0 chr13 60277127 60277149 -59467749 + AT_rich Low_complexity Low_complexity 1 22 0 2011 127 0 39 chr13 60277267 60277574 -59467324 - AluSx SINE Alu -17 295 1 330 289 27 13 chr13 60277699 60277882 -59467016 + L1P5 LINE L1 5271 5457 -699 6517 186 52 43 chr13 60277908 60278160 -59466738 + L1MB7 LINE L1 3539 3787 -2397 1869 174 4 0 chr13 60278160 60278485 -59466413 + AluJo SINE Alu 1 326 0 6517 186 52 43 chr13 60278485 60278560 -59466338 + L1MB7 LINE L1 3787 3860 -2324 1928 137 0 78 chr13 60278560 60278882 -59466016 + AluSx SINE Alu 1 297 -15 213 108 0 0 chr13 60278882 60278919 -59465979 + (CA)n Simple_repeat Simple_repeat 2 38 0 6517 186 52 43 chr13 60278919 60281052 -59463846 + L1MB7 LINE L1 3859 6029 -155 34 72 0 0 chr13 60281410 60281479 -59463419 + AT_rich Low_complexity Low_complexity 1 69 0 24 32 0 0 chr13 60281631 60281662 -59463236 + AT_rich Low_complexity Low_complexity 1 31 0 2086 109 3 3 chr13 60282100 60282385 -59462513 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr13 60282385 60282423 -59462475 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 780 271 36 15 chr13 60282434 60282766 -59462132 - L1ME3 LINE L1 -14 6148 5810 201 167 0 0 chr13 60283434 60283470 -59461428 + (TAA)n Simple_repeat Simple_repeat 2 37 0 301 283 71 0 chr13 60283822 60283921 -59460977 + MIR3 SINE MIR 66 171 -37 45 19 0 0 chr13 60283924 60283976 -59460922 + AT_rich Low_complexity Low_complexity 1 52 0 184 353 0 0 chr13 60285163 60285214 -59459684 + L2 LINE L2 3251 3301 -12 257 302 73 10 chr13 60285801 60285897 -59459001 + L2 LINE L2 3191 3292 -21 344 346 103 22 chr13 60285908 60286044 -59458854 - L2 LINE L2 -9 3263 3117 1450 172 6 83 chr13 60286063 60286377 -59458521 - AluJo SINE Alu -22 290 1 2361 204 94 25 chr13 60287252 60287930 -59456968 - MER50 LTR ERV1 0 734 10 336 24 0 0 chr13 60288393 60288434 -59456464 + (TG)n Simple_repeat Simple_repeat 2 42 0 242 274 0 0 chr13 60288555 60288606 -59456292 + polypurine Low_complexity Low_complexity 3 53 0 228 86 0 0 chr13 60288734 60288769 -59456129 + (CAA)n Simple_repeat Simple_repeat 2 36 0 537 282 30 64 chr13 60289051 60289173 -59455725 + MIR SINE MIR 1 117 -145 2039 112 7 7 chr13 60289173 60289536 -59455362 - AluSp SINE Alu 0 363 1 537 282 30 64 chr13 60289536 60289613 -59455285 + MIR SINE MIR 117 195 -67 183 217 0 87 chr13 60289785 60289854 -59455044 + L3 LINE CR1 826 888 -689 2413 72 7 10 chr13 60291375 60291679 -59453219 + AluSp SINE Alu 1 303 -10 471 277 57 7 chr13 60292541 60292682 -59452216 + L2 LINE L2 3119 3266 -6 1904 46 13 0 chr13 60294380 60294619 -59450279 + L1PA5 LINE L1 5909 6150 -4 1600 161 63 32 chr13 60294733 60295033 -59449865 - MER46B DNA MER2_type -2497 234 45 2235 122 0 0 chr13 60295033 60295336 -59449562 - AluSq SINE Alu -10 303 1 1600 161 63 32 chr13 60295336 60295383 -59449515 - MER46B DNA MER2_type -2686 45 1 270 309 37 12 chr13 60295534 60295615 -59449283 + MIR SINE MIR 17 99 -109 371 316 70 29 chr13 60295948 60296119 -59448779 + MER5B DNA MER1_type 1 178 0 374 352 28 0 chr13 60296123 60296265 -59448633 - L2 LINE L2 -550 2764 2619 642 281 41 44 chr13 60296271 60296517 -59448381 + L1ME3A LINE L1 5611 5856 -314 2306 180 46 37 chr13 60296517 60297061 -59447837 - MER44D DNA MER2_type 0 605 2 642 281 41 44 chr13 60297061 60297107 -59447791 + L1ME3A LINE L1 5856 5901 -269 1617 160 50 114 chr13 60297107 60297582 -59447316 + MER65A LTR ERV1 1 445 0 642 281 41 44 chr13 60297582 60297630 -59447268 + L1ME3A LINE L1 5901 5951 -219 906 244 70 79 chr13 60297836 60298373 -59446525 + MLT1F LTR MaLR 3 538 -11 714 204 6 32 chr13 60298458 60298615 -59446283 + MIR SINE MIR 35 187 -75 321 241 23 0 chr13 60299500 60299587 -59445311 + L3b LINE CR1 1277 1365 -218 182 196 36 71 chr13 60299569 60299625 -59445273 + MIR3 SINE MIR 144 197 -11 * 2319 112 3 0 chr13 60300134 60300446 -59444452 + AluSq SINE Alu 1 313 0 1475 227 152 22 chr13 60300486 60301072 -59443826 - L1MC4 LINE L1 -142 7900 7239 1633 178 63 0 chr13 60301074 60301406 -59443492 - L1MC4 LINE L1 -970 7072 6720 487 242 28 39 chr13 60301847 60302025 -59442873 + MER5B DNA MER1_type 2 177 -1 575 294 21 11 chr13 60302454 60302641 -59442257 + MIR SINE MIR 72 260 -2 873 256 121 48 chr13 60303903 60304403 -59440495 - MLT1H LTR MaLR -15 580 40 521 209 43 9 chr13 60306625 60306740 -59438158 + MLT1J2 LTR MaLR 63 181 -269 413 273 108 0 chr13 60306794 60306933 -59437965 + MLT1J2 LTR MaLR 295 448 -2 348 242 119 68 chr13 60306937 60307156 -59437742 - HAL1 LINE L1 -768 1739 1510 * 835 248 103 31 chr13 60307155 60307603 -59437295 - HAL1 LINE L1 -1230 1277 798 1515 276 88 35 chr13 60307670 60308537 -59436361 - Charlie7 DNA MER1_type -1595 1017 105 42338 36 1 1 chr13 60308541 60314697 -59430201 - L1PA3 LINE L1 -1 6154 1 340 291 59 32 chr13 60314811 60314938 -59429960 + MER5A DNA MER1_type 1 116 -62 303 267 19 93 chr13 60315190 60315351 -59429547 + L2 LINE L2 2908 3056 -216 258 286 0 29 chr13 60315515 60315585 -59429313 + L2 LINE L2 3205 3272 0 2316 126 0 0 chr13 60315593 60315903 -59428995 + AluSx SINE Alu 1 310 -2 6571 75 14 0 chr13 60316109 60316121 -59428777 + L1PA6 LINE L1 4923 4933 -1221 2193 105 0 10 chr13 60316121 60316417 -59428481 + AluSc SINE Alu 1 293 -16 6571 75 14 0 chr13 60316417 60317609 -59427289 + L1PA6 LINE L1 4933 6136 -18 918 185 51 9 chr13 60317658 60317923 -59426975 - L1MD1 LINE L1 -291 5951 5744 2314 181 131 7 chr13 60318089 60318652 -59426246 + LTR28 LTR ERV1 1 1274 -421 1522 199 87 5 chr13 60319368 60319440 -59425458 - MER63B DNA MER1_type -626 436 371 388 46 231 0 chr13 60319440 60319505 -59425393 - MADE1 DNA Mariner 0 80 1 1522 199 87 5 chr13 60319505 60319835 -59425063 - MER63B DNA MER1_type -691 371 1 297 89 0 0 chr13 60320638 60320683 -59424215 + (TG)n Simple_repeat Simple_repeat 2 46 0 508 163 22 15 chr13 60320695 60320830 -59424068 + MER96B DNA MER1_type? 46 181 -236 338 320 202 37 chr13 60320891 60321222 -59423676 + L2 LINE L2 1565 1840 -1474 1921 140 4 4 chr13 60321222 60321501 -59423397 - AluSx SINE Alu -33 279 1 338 320 202 37 chr13 60321501 60321841 -59423057 + L2 LINE L2 1840 2347 -967 595 283 172 32 chr13 60322125 60322531 -59422367 + L2 LINE L2 2851 3313 0 192 323 0 0 chr13 60322592 60322654 -59422244 - L2 LINE L2 -2 3270 3209 * 247 384 32 11 chr13 60322648 60322833 -59422065 + L2 LINE L2 2566 2754 -560 253 342 33 86 chr13 60322920 60323072 -59421826 + L2 LINE L2 3127 3270 -2 195 263 62 38 chr13 60323322 60323402 -59421496 - L2 LINE L2 -55 3258 3177 212 279 23 93 chr13 60323965 60324094 -59420804 - MIR SINE MIR -36 226 107 2573 173 122 155 chr13 60324114 60324917 -59419981 - L1MC4a LINE L1 -821 6987 6168 250 102 0 68 chr13 60324917 60324976 -59419922 + LTR66 LTR ERVL 385 439 -171 2573 173 122 155 chr13 60324976 60325213 -59419685 - L1MC4a LINE L1 -1640 6168 5925 1952 160 16 0 chr13 60325230 60325537 -59419361 - AluJb SINE Alu 0 312 1 2126 89 7 0 chr13 60325776 60326086 -59418812 - AluY SINE Alu 0 312 1 929 202 47 47 chr13 60326126 60326339 -59418559 + MER20 DNA MER1_type 7 219 0 469 226 122 49 chr13 60327142 60327306 -59417592 + LTR50 LTR ERVL 18 193 -602 276 30 0 0 chr13 60327437 60327470 -59417428 + (TTCTC)n Simple_repeat Simple_repeat 4 36 0 1777 205 35 0 chr13 60327527 60327945 -59416953 + MLT2B1 LTR ERVL 1 481 -39 608 225 0 11 chr13 60327964 60328146 -59416752 + GA-rich Low_complexity Low_complexity 1 180 0 264 70 47 23 chr13 60328147 60328190 -59416708 + MLT2B1 LTR ERVL 477 520 0 24 0 0 0 chr13 60328567 60328591 -59416307 + AT_rich Low_complexity Low_complexity 1 24 0 563 281 5 40 chr13 60329535 60329734 -59415164 - LTR16C LTR ERVL 0 491 300 423 200 17 9 chr13 60330158 60330273 -59414625 + CT-rich Low_complexity Low_complexity 2 117 0 2012 135 10 3 chr13 60330286 60330582 -59414316 - AluJb SINE Alu -14 298 1 2008 153 0 7 chr13 60330802 60331109 -59413789 - AluSx SINE Alu -5 307 3 22 0 0 0 chr13 60333252 60333274 -59411624 + AT_rich Low_complexity Low_complexity 1 22 0 2252 115 0 0 chr13 60334458 60334763 -59410135 - AluSg SINE Alu 0 310 6 1068 40 0 8 chr13 60334815 60334939 -59409959 - L1PA5 LINE L1 -15 6139 6017 278 163 0 0 chr13 60337490 60337539 -59407359 + MIR SINE MIR 85 133 -75 1685 223 105 24 chr13 60337543 60337916 -59406982 - MLT2B1 LTR ERVL -117 403 1 321 373 29 53 chr13 60338144 60338276 -59406622 - L2 LINE L2 0 3272 3145 1838 146 48 0 chr13 60338276 60338570 -59406328 + AluSx SINE Alu 1 308 -4 321 373 29 53 chr13 60338570 60338646 -59406252 - L2 LINE L2 -127 3145 3069 434 335 150 11 chr13 60338833 60339200 -59405698 - L2 LINE L2 -337 2977 2560 280 304 130 29 chr13 60339324 60339462 -59405436 + L2 LINE L2 3115 3266 -6 240 291 111 35 chr13 60339462 60339542 -59405356 - L3 LINE CR1 -218 1359 1286 1864 133 84 0 chr13 60339542 60339827 -59405071 - AluSx SINE Alu -3 309 1 240 291 111 35 chr13 60339827 60339945 -59404953 - L3 LINE CR1 -291 1286 1146 825 253 106 113 chr13 60341329 60342339 -59402559 + L2 LINE L2 1959 2961 -353 5240 104 18 7 chr13 60342362 60343076 -59401822 + LTR30 LTR ERV1 1 722 0 13991 70 1 6 chr13 60343076 60344807 -59400091 + HERV30 LTR ERV1 1 1723 -6534 450 138 58 23 chr13 60344807 60344894 -59400004 + LTR30 LTR ERV1 631 720 -2 870 222 6 6 chr13 60344894 60345061 -59399837 + FAM SINE Alu 9 175 -10 421 284 58 32 chr13 60345107 60345297 -59399601 + L2 LINE L2 3118 3312 -1 3617 180 14 17 chr13 60346534 60346887 -59398011 - L1M3 LINE L1 -718 5450 5098 1761 153 28 104 chr13 60346887 60346926 -59397972 - MLT1A1 LTR MaLR 0 365 325 2324 104 0 7 chr13 60346926 60347234 -59397664 + AluSc SINE Alu 1 306 -3 1761 153 28 104 chr13 60347234 60347587 -59397311 - MLT1A1 LTR MaLR -40 325 3 3617 180 14 17 chr13 60347587 60348043 -59396855 - L1M3 LINE L1 -1070 5098 4646 3766 172 35 1 chr13 60348055 60348707 -59396191 + L1MB1 LINE L1 5494 6167 -1 2762 186 40 61 chr13 60348983 60349608 -59395290 + LTR9 LTR ERV1 1 612 0 201 233 204 19 chr13 60349745 60349848 -59395050 + MIR SINE MIR 22 143 -65 3563 209 102 171 chr13 60349859 60350822 -59394076 + L1MC/D LINE L1 19 1047 -5493 1063 196 18 32 chr13 60350822 60351041 -59393857 + AluJo SINE Alu 89 304 -8 3563 209 102 171 chr13 60351041 60351366 -59393532 + L1MC/D LINE L1 1047 1393 -5147 2244 90 10 13 chr13 60351366 60351677 -59393221 + AluSg SINE Alu 1 310 0 3563 209 102 171 chr13 60351677 60352114 -59392784 + L1MC/D LINE L1 1393 1829 -4711 * 5625 211 43 100 chr13 60352093 60352823 -59392075 + L1MC/D LINE L1 3295 4065 -2650 1969 139 48 31 chr13 60352823 60353175 -59391723 - MER46B DNA MER2_type -2 234 2 5625 211 43 100 chr13 60353175 60354561 -59390337 + L1MC/D LINE L1 4065 5201 -1514 2318 140 119 13 chr13 60354561 60354947 -59389951 + MSTA LTR MaLR 1 427 -1 5625 211 43 100 chr13 60354947 60355678 -59389220 + L1MC/D LINE L1 5201 5972 -743 540 45 0 0 chr13 60355681 60355748 -59389150 + (GAAA)n Simple_repeat Simple_repeat 1 67 0 264 198 20 30 chr13 60355770 60355871 -59389027 + C-rich Low_complexity Low_complexity 3 102 0 30 97 0 0 chr13 60355871 60355964 -59388934 + GC_rich Low_complexity Low_complexity 1 93 0 296 133 0 0 chr13 60357119 60357164 -59387734 - MER116 DNA Mariner -1 79 35 834 164 22 0 chr13 60357171 60357305 -59387593 + AluJo SINE Alu 1 137 -175 258 294 22 22 chr13 60357307 60357487 -59387411 + (TA)n Simple_repeat Simple_repeat 1 180 0 1627 263 92 56 chr13 60357499 60358170 -59386728 - L2 LINE L2 -157 3156 2436 787 188 0 8 chr13 60358170 60358303 -59386595 + FLAM_A SINE Alu 1 132 -1 1627 263 92 56 chr13 60358303 60358434 -59386464 - L2 LINE L2 -877 2436 2311 11634 28 0 0 chr13 60359089 60361147 -59383751 - L1PA3 LINE L1 -2 6153 4094 1554 112 149 0 chr13 60361335 60361653 -59383245 - MER47A DNA MER2_type -3 363 2 445 260 106 0 chr13 60364088 60364211 -59380687 + MIR SINE MIR 13 148 -114 440 221 53 11 chr13 60364727 60364822 -59380076 + LTR16C LTR ERVL 393 491 0 414 0 0 0 chr13 60366147 60366193 -59378705 + (TG)n Simple_repeat Simple_repeat 2 47 0 189 319 67 52 chr13 60367035 60367170 -59377728 + MIR3 SINE MIR 6 142 -66 22 0 0 0 chr13 60367760 60367782 -59377116 + AT_rich Low_complexity Low_complexity 1 22 0 300 19 37 37 chr13 60367934 60367988 -59376910 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3340 120 48 26 chr13 60367989 60368505 -59376393 - LTR9B LTR ERV1 -85 559 29 2526 47 3 0 chr13 60368505 60368801 -59376097 - AluY SINE Alu -14 297 1 3340 120 48 26 chr13 60368801 60368827 -59376071 - LTR9B LTR ERV1 -615 29 5 699 205 0 8 chr13 60368829 60368951 -59375947 - HUERS-P3b LTR ERV1 -4 7414 7294 295 272 250 0 chr13 60369399 60369491 -59375407 - MER5A DNA MER1_type 0 189 75 532 279 95 50 chr13 60369774 60369996 -59374902 - MIR SINE MIR -21 241 10 465 269 114 0 chr13 60370102 60370295 -59374603 - L1MC5 LINE L1 -36 7925 7711 2308 107 0 0 chr13 60370497 60370788 -59374110 - AluSq SINE Alu -22 291 1 640 312 86 72 chr13 60370926 60371435 -59373463 - L2 LINE L2 -36 3236 2699 2817 7 0 0 chr13 60371435 60371738 -59373160 - AluYa5 SINE Alu -8 303 1 640 312 86 72 chr13 60371738 60371945 -59372953 - L2 LINE L2 -573 2699 2496 2138 136 0 0 chr13 60372027 60372321 -59372577 + AluSx SINE Alu 1 294 -18 225 0 0 0 chr13 60373102 60373127 -59371771 + (TC)n Simple_repeat Simple_repeat 2 26 0 326 146 22 22 chr13 60373127 60373216 -59371682 + (TA)n Simple_repeat Simple_repeat 1 89 0 203 189 0 0 chr13 60374516 60374553 -59370345 + T-rich Low_complexity Low_complexity 1 37 0 206 236 18 121 chr13 60374800 60374965 -59369933 + L2 LINE L2 1286 1433 -1881 868 280 118 63 chr13 60375403 60376063 -59368835 + L2 LINE L2 152 859 -2455 821 168 0 0 chr13 60376063 60376194 -59368704 - FLAM_C SINE Alu -1 132 2 868 280 118 63 chr13 60376194 60376277 -59368621 + L2 LINE L2 859 936 -2378 2561 300 135 36 chr13 60376476 60376535 -59368363 + L2 LINE L2 913 965 -2307 2111 142 9 72 chr13 60376535 60376761 -59368137 - L1MA4 LINE L1 -2 6298 6059 2297 120 7 0 chr13 60376761 60377069 -59367829 - AluSx SINE Alu -2 310 1 2111 142 9 72 chr13 60377069 60377273 -59367625 - L1MA4 LINE L1 -241 6059 5896 2441 158 36 5 chr13 60377273 60377685 -59367213 + MSTB LTR MaLR 1 425 -1 2111 142 9 72 chr13 60377685 60377712 -59367186 - L1MA4 LINE L1 -404 5896 5869 2561 300 135 36 chr13 60377712 60378041 -59366857 + L2 LINE L2 965 1260 -2012 1890 160 44 0 chr13 60378041 60378335 -59366563 - AluSx SINE Alu -5 307 1 2561 300 135 36 chr13 60378335 60379431 -59365467 + L2 LINE L2 1260 2247 -1025 1901 173 3 0 chr13 60379431 60379726 -59365172 - AluSx SINE Alu -16 296 1 2561 300 135 36 chr13 60379726 60380202 -59364696 + L2 LINE L2 2247 3236 -36 207 88 0 0 chr13 60380700 60380734 -59364164 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2045 118 0 24 chr13 60380762 60381070 -59363828 + AluSx SINE Alu 3 303 0 527 278 5 73 chr13 60381113 60381318 -59363580 - L2 LINE L2 0 3313 3123 366 248 88 0 chr13 60381347 60381472 -59363426 + LTR33 LTR ERVL 10 145 -376 359 267 20 0 chr13 60381636 60381737 -59363161 + LTR33 LTR ERVL 406 508 -13 193 333 113 56 chr13 60382116 60382525 -59362373 + L2 LINE L2 2851 3282 -31 261 221 93 23 chr13 60383207 60383293 -59361605 - MIR SINE MIR -67 195 104 203 353 0 0 chr13 60384853 60384938 -59359960 + T-rich Low_complexity Low_complexity 1 85 0 2359 128 40 35 chr13 60385285 60385467 -59359431 + Tigger2a DNA MER2_type 1 181 -2527 2415 116 13 24 chr13 60385467 60385846 -59359052 + THE1C LTR MaLR 1 375 0 8945 145 38 69 chr13 60385846 60387476 -59357422 + THE1C-int LTR MaLR 1 1580 0 2720 96 5 8 chr13 60387476 60387852 -59357046 + THE1C LTR MaLR 1 375 0 2359 128 40 35 chr13 60387852 60388097 -59356801 + Tigger2a DNA MER2_type 180 432 -2 2148 124 3 0 chr13 60388128 60388419 -59356479 - AluSx SINE Alu -20 292 1 2333 208 54 7 chr13 60388522 60389094 -59355804 + L1MB5 LINE L1 5567 6165 -9 31 26 0 0 chr13 60391096 60391134 -59353764 + AT_rich Low_complexity Low_complexity 1 38 0 326 319 32 48 chr13 60391615 60391863 -59353035 - L2 LINE L2 -1715 1599 1356 2008 152 3 0 chr13 60393396 60393706 -59351192 - AluSx SINE Alu -1 311 1 327 280 11 0 chr13 60393930 60394023 -59350875 + L1MD3 LINE L1 7836 7929 -66 379 233 108 8 chr13 60396042 60396162 -59348736 + MIR SINE MIR 110 241 -21 338 275 202 26 chr13 60396952 60397145 -59347753 + MIR SINE MIR 28 254 -8 29 28 0 0 chr13 60397170 60397206 -59347692 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr13 60397410 60397444 -59347454 + AT_rich Low_complexity Low_complexity 1 34 0 1144 292 180 34 chr13 60397447 60398257 -59346641 + L2 LINE L2 2274 3229 -84 2316 48 61 3 chr13 60398257 60398551 -59346347 - AluY SINE Alu 0 311 1 1144 292 180 34 chr13 60398551 60398646 -59346252 + L2 LINE L2 3229 3309 -4 1461 224 188 26 chr13 60399421 60399917 -59344981 - MLT1E LTR MaLR 0 593 18 690 300 77 20 chr13 60399963 60400141 -59344757 + MIR SINE MIR 2 199 -63 2087 118 0 45 chr13 60400141 60400455 -59344443 + AluSx SINE Alu 1 300 -12 690 300 77 20 chr13 60400455 60400523 -59344375 + MIR SINE MIR 199 262 0 2148 75 7 3 chr13 60400861 60401153 -59343745 + AluY SINE Alu 1 293 -18 570 209 80 25 chr13 60401279 60401442 -59343456 - MER20 DNA MER1_type -7 212 41 799 269 120 12 chr13 60401488 60401972 -59342926 - L1MC4 LINE L1 -547 7495 6960 379 233 108 8 chr13 60404666 60404786 -59340112 - MIR SINE MIR -21 241 110 291 211 53 0 chr13 60406293 60406369 -59338529 - MLT1L LTR MaLR -336 279 200 294 50 0 0 chr13 60406406 60406446 -59338452 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1877 189 22 0 chr13 60406537 60406892 -59338006 - MLT1A1 LTR MaLR 0 365 3 205 275 209 39 chr13 60407163 60407345 -59337553 + L2 LINE L2 3101 3313 0 2508 81 0 0 chr13 60407369 60407679 -59337219 + AluSx SINE Alu 1 310 -2 183 80 0 0 chr13 60407679 60407704 -59337194 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 467 208 33 25 chr13 60408929 60409049 -59335849 + MER20B DNA MER1_type 53 173 -610 547 189 31 66 chr13 60409802 60410030 -59334868 - L1MEd LINE L1 -4974 1145 926 202 184 0 0 chr13 60410870 60410908 -59333990 + L2 LINE L2 3268 3305 -8 216 191 0 0 chr13 60411206 60411248 -59333650 + L2 LINE L2 3272 3313 0 454 304 36 0 chr13 60411274 60411412 -59333486 + MIR SINE MIR 120 262 0 830 135 0 57 chr13 60411552 60411693 -59333205 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr13 60411791 60411815 -59333083 + AT_rich Low_complexity Low_complexity 1 24 0 2115 137 0 0 chr13 60412797 60413097 -59331801 - AluSx SINE Alu -6 306 7 302 246 254 16 chr13 60414181 60414303 -59330595 + MIR SINE MIR 31 181 -81 358 200 0 0 chr13 60414607 60414672 -59330226 + Tigger2 DNA MER2_type 5 69 -2649 * 2492 138 9 29 chr13 60414662 60415117 -59329781 + Tigger2 DNA MER2_type 2273 2718 0 551 245 148 0 chr13 60415371 60415526 -59329372 + MER5A DNA MER1_type 10 187 -2 278 274 0 0 chr13 60415543 60415605 -59329293 + L2 LINE L2 3251 3312 -1 1645 167 3 42 chr13 60415732 60416043 -59328855 + AluJb SINE Alu 1 299 -13 564 295 52 12 chr13 60416870 60417043 -59327855 + MIR SINE MIR 24 203 -59 691 192 99 7 chr13 60417062 60417213 -59327685 + MIR SINE MIR 12 176 -86 28 0 0 0 chr13 60417221 60417249 -59327649 + AT_rich Low_complexity Low_complexity 1 28 0 2813 69 0 0 chr13 60417249 60417609 -59327289 - L1PA6 LINE L1 0 6154 5795 260 231 179 0 chr13 60417609 60417687 -59327211 + MIR SINE MIR 161 252 -10 1619 165 20 94 chr13 60418393 60418787 -59326111 + MLT1A1 LTR MaLR 1 365 0 360 257 63 51 chr13 60419092 60419267 -59325631 - MIR SINE MIR 0 262 86 2053 132 0 35 chr13 60419525 60419843 -59325055 - AluSx SINE Alu -4 308 2 319 266 76 76 chr13 60420092 60420276 -59324622 - MLT1L LTR MaLR -228 387 204 243 294 0 0 chr13 60420319 60420387 -59324511 - MLT1L LTR MaLR -530 85 18 279 292 138 65 chr13 60420419 60420710 -59324188 - L2 LINE L2 -75 3238 2927 1063 182 5 27 chr13 60421089 60421205 -59323693 + MER5A DNA MER1_type 6 118 -71 2190 158 30 57 chr13 60421205 60421643 -59323255 + MSTB LTR MaLR 1 426 0 1063 182 5 27 chr13 60421643 60421713 -59323185 + MER5A DNA MER1_type 118 188 -1 885 264 60 22 chr13 60421767 60422081 -59322817 - L2 LINE L2 -1009 2305 1980 258 213 0 16 chr13 60422183 60422244 -59322654 + MLT1L LTR MaLR 164 223 -392 250 0 0 0 chr13 60422411 60422440 -59322458 + MIR SINE MIR 122 150 -112 425 271 129 0 chr13 60422482 60422637 -59322261 + MLT1L LTR MaLR 441 615 0 343 319 127 24 chr13 60423205 60423371 -59321527 + MIR3 SINE MIR 17 199 -9 326 368 48 0 chr13 60425757 60425882 -59319016 - L2 LINE L2 0 3272 3142 213 154 0 0 chr13 60426043 60426082 -59318816 + GA-rich Low_complexity Low_complexity 1 39 0 183 42 0 0 chr13 60426110 60426134 -59318764 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 243 368 19 39 chr13 60426666 60426821 -59318077 - L2 LINE L2 -285 2987 2836 1935 129 0 50 chr13 60427316 60427633 -59317265 - AluSq SINE Alu -12 301 1 1302 225 143 20 chr13 60427749 60428189 -59316709 - MLT1F1 LTR MaLR -7 560 67 481 221 90 28 chr13 60428780 60428925 -59315973 + MLT1I LTR MaLR 1 154 -255 4156 164 66 33 chr13 60428925 60430287 -59314611 - L1MB7 LINE L1 -2 6182 4777 415 351 89 8 chr13 60430291 60430539 -59314359 + MLT1I LTR MaLR 142 409 0 220 350 79 76 chr13 60430701 60431018 -59313880 - L2 LINE L2 -10 3262 2945 23 0 0 0 chr13 60432074 60432097 -59312801 + AT_rich Low_complexity Low_complexity 1 23 0 2100 120 0 0 chr13 60432591 60432901 -59311997 + AluSx SINE Alu 1 310 0 444 209 7 14 chr13 60432905 60433044 -59311854 + GA-rich Low_complexity Low_complexity 2 139 0 827 192 20 30 chr13 60433266 60433469 -59311429 - MLT1A1 LTR MaLR -155 210 10 22 0 0 0 chr13 60433954 60433976 -59310922 + AT_rich Low_complexity Low_complexity 1 22 0 1999 97 14 0 chr13 60433976 60434254 -59310644 - L1PA8 LINE L1 -5 6167 5886 2431 73 7 0 chr13 60434268 60434568 -59310330 - AluSp SINE Alu -11 302 1 273 290 11 57 chr13 60434575 60434751 -59310147 + HAL1b LINE L1 496 663 -685 1751 193 0 3 chr13 60435428 60435724 -59309174 + AluJo SINE Alu 1 295 -17 1022 301 129 46 chr13 60435745 60436944 -59307954 + L1 LINE L1 2340 3707 -2439 2129 214 85 43 chr13 60437370 60437981 -59306917 + MLT1E1 LTR MaLR 7 643 -11 850 208 60 0 chr13 60438104 60438272 -59306626 + FRAM SINE Alu 1 176 0 306 262 19 19 chr13 60438582 60438685 -59306213 + L1 LINE L1 4343 4445 -1701 931 197 6 33 chr13 60438793 60438976 -59305922 + AluJo SINE Alu 112 289 -23 344 264 83 21 chr13 60439124 60439268 -59305630 - MIR SINE MIR 0 262 110 222 247 178 14 chr13 60439912 60439985 -59304913 - L2 LINE L2 -2 3270 3186 1246 261 64 111 chr13 60440164 60440641 -59304257 - L2 LINE L2 -630 2684 2186 400 151 35 0 chr13 60440641 60440727 -59304171 + L1MB3 LINE L1 6094 6182 -1 1246 261 64 111 chr13 60440727 60440748 -59304150 - L2 LINE L2 -1128 2186 2166 1926 150 3 10 chr13 60440748 60441061 -59303837 + AluSx SINE Alu 1 311 -1 1246 261 64 111 chr13 60441061 60441432 -59303466 - L2 LINE L2 -1148 2166 1855 2321 166 90 4 chr13 60443309 60443774 -59301124 - MLT1D LTR MaLR 0 505 1 2033 145 127 18 chr13 60444072 60444458 -59300440 + MSTA LTR MaLR 1 428 0 208 208 21 0 chr13 60444552 60444648 -59300250 + (TA)n Simple_repeat Simple_repeat 1 98 0 386 239 0 77 chr13 60444655 60444772 -59300126 + L1MC4 LINE L1 6614 6721 -1321 2008 129 28 0 chr13 60444970 60445256 -59299642 + AluY SINE Alu 1 294 -17 597 268 105 14 chr13 60445436 60445645 -59299253 + MIR SINE MIR 21 248 -14 608 276 64 32 chr13 60445822 60446072 -59298826 - MIR SINE MIR -2 260 3 21 0 0 0 chr13 60446139 60446160 -59298738 + AT_rich Low_complexity Low_complexity 1 21 0 210 272 284 0 chr13 60446160 60446241 -59298657 - L2 LINE L2 -15 3257 3154 999 136 22 5 chr13 60446551 60446735 -59298163 - L1MD2 LINE L1 -10 6349 6163 432 0 0 0 chr13 60446739 60446787 -59298111 + (TG)n Simple_repeat Simple_repeat 2 49 0 1719 166 86 13 chr13 60446801 60447115 -59297783 - MER1B DNA MER1_type 0 337 1 822 170 0 0 chr13 60447218 60447353 -59297545 - FRAM SINE Alu -2 174 40 1806 137 52 0 chr13 60447407 60447700 -59297198 - AluSq SINE Alu 0 307 1 747 244 130 43 chr13 60448479 60448733 -59296165 + Charlie8 DNA MER1_type 1 276 -2141 1926 198 14 24 chr13 60450560 60451069 -59293829 - MER69 DNA AcHobo -5 2521 2018 328 259 12 12 chr13 60451098 60451183 -59293715 - MER69 DNA AcHobo -791 435 351 2044 101 0 0 chr13 60451199 60451477 -59293421 + AluSq SINE Alu 36 313 0 7207 49 6 0 chr13 60451494 60453080 -59291818 + L1PA7 LINE L1 4604 6154 0 491 201 241 6 chr13 60453331 60453505 -59291393 - MER69 DNA AcHobo -2195 331 117 1837 143 42 7 chr13 60454004 60454291 -59290607 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr13 60454608 60454632 -59290266 + AT_rich Low_complexity Low_complexity 1 24 0 665 310 108 27 chr13 60455158 60455565 -59289333 - MLT1K LTR MaLR -114 474 35 2595 106 86 5 chr13 60455775 60456171 -59288727 - MSTA LTR MaLR 0 428 1 553 189 126 13 chr13 60456559 60456718 -59288180 - MER63A DNA MER1_type -33 177 1 889 268 79 14 chr13 60457385 60457665 -59287233 - L2 LINE L2 -1260 2054 1757 230 0 33 0 chr13 60457831 60457861 -59287037 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 348 188 0 0 chr13 60459018 60459087 -59285811 + (TG)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr13 60459191 60459216 -59285682 + AT_rich Low_complexity Low_complexity 1 25 0 434 319 132 38 chr13 60459628 60459841 -59285057 - MIR SINE MIR -5 257 25 31 44 0 0 chr13 60460837 60460882 -59284016 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr13 60461063 60461094 -59283804 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr13 60461244 60461279 -59283619 + AT_rich Low_complexity Low_complexity 1 35 0 1193 244 81 108 chr13 60461678 60462280 -59282618 - MLT1G LTR MaLR -7 583 3 28 48 0 0 chr13 60462287 60462329 -59282569 + AT_rich Low_complexity Low_complexity 1 42 0 4294 151 53 17 chr13 60462686 60463923 -59280975 + L1PA16 LINE L1 4840 6157 -9 23 0 0 0 chr13 60463923 60463946 -59280952 + AT_rich Low_complexity Low_complexity 1 23 0 1974 178 0 0 chr13 60464396 60464705 -59280193 - AluJb SINE Alu -2 310 2 458 235 169 38 chr13 60465404 60465539 -59279359 + MIR SINE MIR 1 168 -94 378 0 0 0 chr13 60465539 60465581 -59279317 + (CA)n Simple_repeat Simple_repeat 2 43 0 458 235 169 38 chr13 60465581 60465628 -59279270 + MIR SINE MIR 168 207 -55 1004 228 76 81 chr13 60466347 60466498 -59278400 + MER113 DNA MER1_type? 1 151 -370 1852 179 3 0 chr13 60466498 60466783 -59278115 - AluJo SINE Alu -26 286 1 1004 228 76 81 chr13 60466783 60467066 -59277832 + MER113 DNA MER1_type? 151 433 -88 246 348 37 30 chr13 60467159 60467294 -59277604 + MIR SINE MIR 6 141 -121 190 273 86 58 chr13 60467576 60467715 -59277183 + L2 LINE L2 2124 2266 -1048 207 0 0 0 chr13 60468606 60468629 -59276269 + (T)n Simple_repeat Simple_repeat 1 23 0 302 202 172 20 chr13 60469978 60470077 -59274821 - L1MC4 LINE L1 0 8042 7929 943 85 0 0 chr13 60470079 60470209 -59274689 - AluSc SINE Alu -5 304 175 238 228 32 32 chr13 60470358 60470481 -59274417 - L1MC5 LINE L1 -279 7682 7560 336 153 16 12 chr13 60470528 60470662 -59274236 - Alu SINE Alu -6 296 246 210 71 0 0 chr13 60471217 60471245 -59273653 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 460 263 91 86 chr13 60471351 60471780 -59273118 - L1M2 LINE L1 -5710 1139 709 610 265 0 36 chr13 60472550 60472716 -59272182 - MIR SINE MIR -102 160 1 2125 75 31 20 chr13 60474413 60474706 -59270192 + AluSg SINE Alu 1 296 -14 387 280 85 7 chr13 60474732 60474868 -59270030 - MIR SINE MIR -51 157 12 1406 188 73 27 chr13 60475120 60475449 -59269449 - MER2 DNA MER2_type 0 344 1 1235 86 55 0 chr13 60476644 60476807 -59268091 - AluSp SINE Alu -7 306 135 221 295 167 0 chr13 60477879 60477957 -59266941 - L2 LINE L2 -4 3268 3178 2784 13 0 0 chr13 60478255 60478562 -59266336 - AluYa5 SINE Alu -4 307 1 944 179 0 0 chr13 60478570 60478721 -59266177 - FRAM SINE Alu -15 151 1 2235 124 19 28 chr13 60478740 60479102 -59265796 + THE1B LTR MaLR 1 359 -5 853 136 0 0 chr13 60479103 60479221 -59265677 - AluSq/x SINE Alu -195 118 1 832 283 151 43 chr13 60479473 60480199 -59264699 - L2 LINE L2 -330 2983 2175 1185 153 128 3 chr13 60480199 60480487 -59264411 + MER33 DNA MER1_type 1 324 0 832 283 151 43 chr13 60480487 60480533 -59264365 - L2 LINE L2 -1138 2175 2135 21 36 0 0 chr13 60480806 60480834 -59264064 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 60480892 60480914 -59263984 + AT_rich Low_complexity Low_complexity 1 22 0 308 312 55 9 chr13 60481147 60481256 -59263642 + L2 LINE L2 3197 3310 -3 2253 74 3 0 chr13 60481765 60482062 -59262836 + THE1A LTR MaLR 1 298 -57 1698 70 5 0 chr13 60482052 60482266 -59262632 + THE1A LTR MaLR 141 355 0 * 11856 90 6 1 chr13 60482266 60483838 -59261060 + THE1A-int LTR MaLR 1 1580 0 2737 84 0 0 chr13 60483838 60484193 -59260705 + THE1A LTR MaLR 1 355 0 440 218 0 0 chr13 60485671 60485749 -59259149 + MER5A DNA MER1_type 9 86 -103 370 202 34 34 chr13 60486096 60486185 -59258713 - MER5C DNA MER1_type -230 94 6 23 86 0 0 chr13 60487126 60487184 -59257714 + AT_rich Low_complexity Low_complexity 1 58 0 977 240 24 24 chr13 60487298 60487544 -59257354 + MIR SINE MIR 4 249 -13 1044 226 18 9 chr13 60488215 60488436 -59256462 + MER58A DNA MER1_type 2 224 0 213 184 66 0 chr13 60489275 60489351 -59255547 + (TTA)n Simple_repeat Simple_repeat 2 82 0 223 338 25 0 chr13 60490598 60490678 -59254220 + L2 LINE L2 1839 1920 -1394 574 317 39 0 chr13 60491088 60491293 -59253605 + L1ME2 LINE L1 5950 6162 -2 634 344 73 59 chr13 60491308 60491732 -59253166 - L2 LINE L2 -1 3271 2842 268 342 118 35 chr13 60491935 60492241 -59252657 - L2 LINE L2 -778 2536 2198 2101 113 32 0 chr13 60492241 60492525 -59252373 + AluSx SINE Alu 7 299 -13 268 342 118 35 chr13 60492525 60492557 -59252341 - L2 LINE L2 -1116 2198 2170 1679 182 7 3 chr13 60492561 60492857 -59252041 + AluJo SINE Alu 1 297 -15 367 103 0 0 chr13 60492963 60493021 -59251877 + Alu SINE Alu 243 300 0 520 281 78 54 chr13 60493082 60493763 -59251135 - L1M4 LINE L1 -2967 3179 2483 391 296 95 62 chr13 60493809 60494232 -59250666 - HAL1b LINE L1 -808 540 153 3290 59 9 5 chr13 60495489 60495914 -59248984 + L1PA8 LINE L1 5746 6172 0 23 0 0 0 chr13 60496007 60496030 -59248868 + AT_rich Low_complexity Low_complexity 1 23 0 1518 267 53 24 chr13 60496305 60496762 -59248136 - L1M4 LINE L1 -830 5316 4874 2364 81 0 7 chr13 60496762 60497059 -59247839 + AluY SINE Alu 1 295 -16 1518 267 53 24 chr13 60497059 60497239 -59247659 - L1M4 LINE L1 -1272 4874 4655 2424 143 3 3 chr13 60497239 60497603 -59247295 - THE1B LTR MaLR 0 364 1 1518 267 53 24 chr13 60497603 60497664 -59247234 - L1M4 LINE L1 -1491 4655 4597 346 292 0 5 chr13 60498593 60498804 -59246094 + G-rich Low_complexity Low_complexity 1 209 0 329 268 57 77 chr13 60498819 60499065 -59245833 + MIR SINE MIR 22 262 0 711 241 97 35 chr13 60499425 60499653 -59245245 + L2 LINE L2 1222 1463 -1851 2707 281 95 27 chr13 60499771 60500256 -59244642 + L2 LINE L2 1928 2378 -935 2470 75 13 0 chr13 60500256 60500563 -59244335 - AluSp SINE Alu -2 311 1 2707 281 95 27 chr13 60500563 60501184 -59243714 + L2 LINE L2 2378 3104 -209 198 0 0 0 chr13 60501326 60501348 -59243550 + (A)n Simple_repeat Simple_repeat 1 22 0 914 116 0 0 chr13 60501764 60501885 -59243013 - AluSq/x SINE Alu -192 121 1 1876 221 82 20 chr13 60501886 60503288 -59241610 - L1M3 LINE L1 -740 5440 3733 381 139 76 0 chr13 60503313 60503392 -59241506 - L1MB2 LINE L1 -7 6164 6080 1562 151 21 60 chr13 60503393 60503910 -59240988 + L1MB2 LINE L1 5391 6037 -134 292 228 138 24 chr13 60503908 60504007 -59240891 - L1MEc LINE L1 -4118 2278 2192 * 1600 225 39 13 chr13 60504007 60504393 -59240505 - MSTD LTR MaLR 0 396 1 292 228 138 24 chr13 60504393 60504460 -59240438 - L1MEc LINE L1 -4204 2192 2093 6673 103 18 43 chr13 60504461 60505489 -59239409 + LTR13 LTR ERVK 1 1002 -5 701 279 140 7 chr13 60505496 60505952 -59238946 - L1MEc LINE L1 -4300 2096 1580 1674 174 0 0 chr13 60506139 60506404 -59238494 + AluJo SINE Alu 1 265 -47 2202 106 3 10 chr13 60507046 60507349 -59237549 - AluSx SINE Alu -11 301 1 2250 72 7 0 chr13 60507922 60508201 -59236697 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 60508201 60508230 -59236668 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 258 296 23 29 chr13 60508635 60508807 -59236091 + L1MEd LINE L1 654 824 -5295 1948 136 3 17 chr13 60509484 60509778 -59235120 - AluSx SINE Alu -22 290 1 251 326 156 18 chr13 60510537 60510733 -59234165 + MIR SINE MIR 15 238 -24 2783 154 10 2 chr13 60513012 60513492 -59231406 + L1MA9 LINE L1 5304 5787 -525 2119 140 86 37 chr13 60513492 60513900 -59230998 + Tigger2a DNA MER2_type 1 428 -6 1799 206 59 31 chr13 60513906 60514382 -59230516 + L1MA9 LINE L1 5786 6274 -38 370 363 38 19 chr13 60514395 60514607 -59230291 + L1M4 LINE L1 3347 3562 -2584 1731 148 25 74 chr13 60514620 60514984 -59229914 - MER7A DNA MER2_type -2 344 1 1131 239 67 45 chr13 60515011 60515459 -59229439 - L1MEc LINE L1 -5304 901 444 1226 264 65 37 chr13 60515719 60516208 -59228690 - MLT1D LTR MaLR 0 505 3 1198 233 108 39 chr13 60516253 60516817 -59228081 - LTR48B LTR ERV1 0 644 1 312 291 22 52 chr13 60517377 60517511 -59227387 - MIR SINE MIR -12 250 121 396 345 49 22 chr13 60517755 60517981 -59226917 + MIR SINE MIR 26 257 -5 186 321 107 24 chr13 60518031 60518115 -59226783 - L2 LINE L2 -50 3222 3132 203 122 0 24 chr13 60518310 60518351 -59226547 + (CA)n Simple_repeat Simple_repeat 2 41 0 244 298 121 32 chr13 60518462 60518586 -59226312 + LTR67 LTR ERVL 2 136 -421 356 268 173 28 chr13 60518776 60518955 -59225943 - MER63A DNA MER1_type -5 205 1 357 331 6 19 chr13 60518969 60519126 -59225772 - L1ME LINE L1 -503 5659 5505 453 246 156 45 chr13 60519186 60519331 -59225567 - L1ME LINE L1 -1466 4680 4552 696 286 55 0 chr13 60519331 60519530 -59225368 + MER63A DNA MER1_type 1 210 0 453 246 156 45 chr13 60519530 60519737 -59225161 - L1ME LINE L1 -1594 4552 4289 840 248 5 16 chr13 60519853 60520065 -59224833 - L1MB5 LINE L1 -217 5957 5760 602 75 0 0 chr13 60520065 60520145 -59224753 - MADE1 DNA Mariner 0 80 1 840 248 5 16 chr13 60520145 60520181 -59224717 - L1MB5 LINE L1 -414 5760 5725 271 294 41 73 chr13 60521563 60521907 -59222991 + L1MEc LINE L1 1116 1448 -4948 13037 230 24 29 chr13 60522383 60523960 -59220938 + L1P LINE L1 1452 3036 -3110 1970 148 7 16 chr13 60523960 60524265 -59220633 + AluSx SINE Alu 1 302 -10 13037 230 24 29 chr13 60524265 60524464 -59220434 + L1P LINE L1 3036 3235 -2911 2068 138 0 10 chr13 60524464 60524775 -59220123 + AluSx SINE Alu 3 310 -2 13037 230 24 29 chr13 60524775 60525552 -59219346 + L1P LINE L1 3235 4015 -2131 1719 192 0 0 chr13 60525552 60525869 -59219029 + AluJo SINE Alu 1 317 0 13037 230 24 29 chr13 60525869 60527058 -59217840 + L1P LINE L1 4015 5185 -961 551 317 29 10 chr13 60527797 60528002 -59216896 - MIR SINE MIR -6 256 48 21 0 0 0 chr13 60529348 60529369 -59215529 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr13 60529566 60529587 -59215311 + (A)n Simple_repeat Simple_repeat 1 21 0 1629 189 14 0 chr13 60532050 60532346 -59212552 + AluJb SINE Alu 1 300 -12 5687 128 24 25 chr13 60533134 60534569 -59210329 - L1PB2 LINE L1 0 6151 4716 2280 102 3 0 chr13 60534984 60535288 -59209610 - AluSq SINE Alu -8 305 1 279 322 62 34 chr13 60535308 60535454 -59209444 + MIR3 SINE MIR 20 169 -39 235 197 30 0 chr13 60535455 60535521 -59209377 + (TTTAA)n Simple_repeat Simple_repeat 2 69 0 2129 117 0 0 chr13 60538263 60538553 -59206345 + AluSg SINE Alu 1 290 -20 22 56 0 0 chr13 60538995 60539031 -59205867 + AT_rich Low_complexity Low_complexity 1 36 0 949 244 126 33 chr13 60539627 60539991 -59204907 - MER68 LTR ERV1 -155 407 10 31 68 0 0 chr13 60540171 60540230 -59204668 + AT_rich Low_complexity Low_complexity 1 59 0 270 160 0 0 chr13 60540282 60540332 -59204566 + (TG)n Simple_repeat Simple_repeat 1 50 0 236 283 42 50 chr13 60540625 60540745 -59204153 - MIR SINE MIR -60 202 84 362 213 27 0 chr13 60541061 60541136 -59203762 - MIR SINE MIR -3 259 183 242 358 66 83 chr13 60541418 60541706 -59203192 - L3b LINE CR1 -19 1564 1282 26 0 0 0 chr13 60542566 60542592 -59202306 + AT_rich Low_complexity Low_complexity 1 26 0 558 296 86 15 chr13 60543150 60543417 -59201481 - L3b LINE CR1 -196 1387 1102 713 215 37 84 chr13 60543430 60543621 -59201277 - MER5A DNA MER1_type -1 188 7 1759 223 48 31 chr13 60544190 60544644 -59200254 - MLT1C LTR MaLR 0 467 6 889 279 123 8 chr13 60544813 60545178 -59199720 - Charlie7 DNA MER1_type -2155 457 51 571 150 88 0 chr13 60545294 60545407 -59199491 + MER3 DNA MER1_type 87 209 0 2138 113 0 0 chr13 60546226 60546508 -59198390 - AluSx SINE Alu -28 284 3 1928 127 14 0 chr13 60547312 60547595 -59197303 + AluSx SINE Alu 1 287 -25 35 0 0 0 chr13 60547595 60547630 -59197268 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr13 60549261 60549282 -59195616 + (TTA)n Simple_repeat Simple_repeat 1 21 0 5613 132 56 11 chr13 60549405 60549704 -59195194 + L1MA4 LINE L1 4689 4973 -1327 1370 164 131 15 chr13 60549704 60549972 -59194926 + AluSg1 SINE Alu 1 299 -10 5613 132 56 11 chr13 60549972 60550431 -59194467 + L1MA4 LINE L1 4973 5410 -890 2410 135 66 5 chr13 60550431 60550838 -59194060 + MSTB1 LTR MaLR 1 432 0 5613 132 56 11 chr13 60550838 60551128 -59193770 + L1MA4 LINE L1 5410 5686 -614 180 111 0 0 chr13 60551128 60551155 -59193743 + (TATG)n Simple_repeat Simple_repeat 2 28 0 297 75 0 0 chr13 60551155 60551195 -59193703 + (CA)n Simple_repeat Simple_repeat 2 41 0 5613 132 56 11 chr13 60551195 60551680 -59193218 + L1MA4 LINE L1 5685 6300 0 256 229 14 0 chr13 60552135 60552205 -59192693 - L1MA9 LINE L1 -8 6304 6234 23 0 0 0 chr13 60552267 60552290 -59192608 + AT_rich Low_complexity Low_complexity 1 23 0 1802 144 13 39 chr13 60553095 60553401 -59191497 + AluSx SINE Alu 1 298 -14 1500 94 18 0 chr13 60553566 60553789 -59191109 - L1PA10 LINE L1 0 6168 5942 245 366 147 16 chr13 60554409 60554660 -59190238 + L2 LINE L2 2391 2674 -640 303 28 0 0 chr13 60556009 60556045 -59188853 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 71 0 0 chr13 60556146 60556188 -59188710 + AT_rich Low_complexity Low_complexity 1 42 0 880 294 110 32 chr13 60556420 60557212 -59187686 - L1MEc LINE L1 -5255 1141 288 309 297 8 23 chr13 60557259 60557387 -59187511 - L1MEc LINE L1 -6196 200 75 5729 128 37 21 chr13 60561427 60561918 -59182980 - L1MA5 LINE L1 -5 6295 5813 1450 151 29 131 chr13 60561918 60562156 -59182742 - MER2 DNA MER2_type 0 344 158 1753 143 70 7 chr13 60562156 60562443 -59182455 + AluSp SINE Alu 1 305 -8 1450 151 29 131 chr13 60562443 60562587 -59182311 - MER2 DNA MER2_type -186 158 1 5729 128 37 21 chr13 60562587 60562966 -59181932 - L1MA5 LINE L1 -487 5813 5441 2443 150 61 14 chr13 60562966 60563406 -59181492 - LOR1b LTR ERV1 0 461 1 5729 128 37 21 chr13 60563406 60563513 -59181385 - L1MA5 LINE L1 -859 5441 5337 2102 110 7 23 chr13 60563513 60563823 -59181075 - AluSx SINE Alu -7 305 1 207 69 0 0 chr13 60563832 60563861 -59181037 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5729 128 37 21 chr13 60563861 60564087 -59180811 - L1MA5 LINE L1 -970 5330 5063 435 255 181 59 chr13 60564392 60564596 -59180302 + MIR SINE MIR 2 230 -32 21 82 0 0 chr13 60564699 60564748 -59180150 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr13 60564993 60565016 -59179882 + (T)n Simple_repeat Simple_repeat 1 23 0 2637 278 98 27 chr13 60565158 60565776 -59179122 - L2 LINE L2 -209 3104 2532 2439 75 13 0 chr13 60565776 60566083 -59178815 + AluSp SINE Alu 1 311 -2 2637 278 98 27 chr13 60566083 60566568 -59178330 - L2 LINE L2 -781 2532 1928 702 246 97 35 chr13 60566686 60566914 -59177984 - L2 LINE L2 -1851 1463 1222 676 246 55 55 chr13 60567274 60567530 -59177368 - MIR SINE MIR 0 262 7 2603 52 0 0 chr13 60567849 60568158 -59176740 - AluY SINE Alu -2 309 1 1949 145 10 3 chr13 60568320 60568616 -59176282 + AluSx SINE Alu 2 299 -13 429 246 63 8 chr13 60570062 60570188 -59174710 - MLT1L LTR MaLR -17 598 466 1335 133 8 68 chr13 60570237 60570406 -59174492 - LTR8 LTR ERV1 0 691 538 2101 121 0 13 chr13 60570406 60570704 -59174194 - AluSq SINE Alu -17 296 3 1335 133 8 68 chr13 60570704 60570768 -59174130 - LTR8 LTR ERV1 -153 538 472 719 78 0 0 chr13 60570759 60570849 -59174049 - LTR8 LTR ERV1 -367 324 235 * 2898 87 72 5 chr13 60570850 60571227 -59173671 + MLT2A1 LTR ERVL 2 411 -33 504 0 0 0 chr13 60571227 60571283 -59173615 + (TA)n Simple_repeat Simple_repeat 2 57 0 2898 87 72 5 chr13 60571283 60571320 -59173578 + MLT2A1 LTR ERVL 411 444 0 5338 76 0 9 chr13 60571320 60571747 -59173151 + HERVL-A1 LTR ERVL 1 421 -5233 5152 97 54 4 chr13 60571747 60572490 -59172408 - LTR17 LTR ERV1 0 780 1 5338 76 0 9 chr13 60572490 60572759 -59172139 + HERVL-A1 LTR ERVL 421 691 -4963 * 25329 69 31 3 chr13 60572757 60576078 -59168820 + HERVL-A1 LTR ERVL 950 4365 -1289 321 48 0 0 chr13 60576078 60576120 -59168778 - LTR9 LTR ERV1 -570 42 1 1346 136 5 0 chr13 60576120 60576318 -59168580 - HUERS-P3 LTR ERV1 -1 8918 8720 609 181 8 15 chr13 60576472 60576605 -59168293 - HUERS-P3b LTR ERV1 -2450 2565 2434 * 922 159 11 16 chr13 60576596 60576778 -59168120 - HUERS-P3b LTR ERV1 -3692 4124 3944 17889 116 20 11 chr13 60576778 60579572 -59165326 - HUERS-P3b LTR ERV1 -474 6944 1941 11267 175 111 24 chr13 60579585 60581402 -59163496 + L1P LINE L1 12 2149 -3997 1837 132 26 43 chr13 60581402 60581706 -59163192 + AluSg SINE Alu 1 299 -11 11267 175 111 24 chr13 60581706 60582642 -59162256 + L1P LINE L1 2149 3003 -3143 7327 91 5 0 chr13 60582640 60583651 -59161247 + L1P LINE L1 4069 5084 -1062 * 1007 265 12 21 chr13 60583669 60583997 -59160901 + L1M4 LINE L1 932 1256 -5286 258 105 0 0 chr13 60585717 60585755 -59159143 + (T)n Simple_repeat Simple_repeat 1 38 0 1312 222 18 88 chr13 60586445 60586841 -59158057 - MLT1E1 LTR MaLR 0 654 287 2083 117 60 23 chr13 60586958 60587308 -59157590 - THE1B LTR MaLR 0 364 2 8413 103 4 2 chr13 60587309 60588453 -59156445 - THE1B-int LTR MaLR 0 1580 434 2165 119 54 23 chr13 60588487 60588840 -59156058 + THE1B LTR MaLR 1 364 0 3433 70 15 2 chr13 60588840 60589298 -59155600 + THE1B-int LTR MaLR 1 464 -1116 581 131 215 0 chr13 60589298 60589405 -59155493 - LTR57 LTR ERVL -281 130 1 211 330 148 37 chr13 60589533 60589830 -59155068 - L2 LINE L2 -344 2970 2641 481 291 35 47 chr13 60591496 60591668 -59153230 + MIR SINE MIR 59 228 -34 369 159 24 109 chr13 60592773 60592945 -59151953 + MER5C DNA MER1_type 75 324 0 890 279 81 12 chr13 60593087 60593410 -59151488 + MLT1G LTR MaLR 234 578 -12 425 205 111 26 chr13 60594164 60594281 -59150617 - MIR SINE MIR -12 250 124 292 212 169 42 chr13 60594588 60594746 -59150152 + MIR SINE MIR 2 172 -36 348 328 108 42 chr13 60595321 60595699 -59149199 + L2 LINE L2 2894 3296 -17 236 219 26 132 chr13 60595699 60595813 -59149085 - MIR SINE MIR -129 133 32 276 246 42 8 chr13 60595835 60595929 -59148969 - MIR SINE MIR -50 212 116 365 221 39 48 chr13 60596256 60596360 -59148538 - L2 LINE L2 -2 3270 3168 2424 67 0 3 chr13 60596551 60596849 -59148049 + AluSp SINE Alu 1 297 -16 21 89 0 0 chr13 60596973 60597029 -59147869 + AT_rich Low_complexity Low_complexity 1 56 0 661 233 178 0 chr13 60597385 60597565 -59147333 - MIR SINE MIR -10 252 41 393 332 108 26 chr13 60597839 60598071 -59146827 + MIR SINE MIR 2 252 -10 1901 135 4 0 chr13 60598505 60598779 -59146119 - AluSx SINE Alu -3 309 35 358 241 18 80 chr13 60602783 60602895 -59142003 - L2 LINE L2 0 3313 3209 2223 111 0 0 chr13 60603905 60604212 -59140686 - AluSx SINE Alu -5 307 1 28 29 0 0 chr13 60604220 60604255 -59140643 + AT_rich Low_complexity Low_complexity 1 35 0 364 241 61 100 chr13 60605401 60605578 -59139320 - HAL1 LINE L1 -847 1660 1495 2043 146 0 0 chr13 60605578 60605873 -59139025 - AluSx SINE Alu -17 295 1 364 241 61 100 chr13 60605873 60605956 -59138942 - HAL1 LINE L1 -1012 1495 1410 238 307 57 62 chr13 60605972 60606148 -59138750 + MER20 DNA MER1_type 24 198 -21 41 48 0 0 chr13 60608385 60608447 -59136451 + AT_rich Low_complexity Low_complexity 1 62 0 280 57 0 0 chr13 60608449 60608484 -59136414 + U2 snRNA snRNA 1 35 -153 402 315 158 27 chr13 60608687 60609017 -59135881 + L2 LINE L2 2931 3303 -10 21 0 0 56 chr13 60609169 60609186 -59135712 + AT_rich Low_complexity Low_complexity 1 17 -17 2169 91 0 46 chr13 60609186 60609493 -59135405 - AluSq SINE Alu -20 293 1 21 0 0 56 chr13 60609493 60609511 -59135387 + AT_rich Low_complexity Low_complexity 17 34 0 182 277 117 51 chr13 60609511 60609648 -59135250 - L2 LINE L2 -2480 834 689 302 247 52 21 chr13 60610181 60610278 -59134620 - L2 LINE L2 -1336 1978 1879 191 119 0 71 chr13 60610679 60610721 -59134177 - L2 LINE L2 -8 3264 3226 22 0 0 0 chr13 60610859 60610881 -59134017 + AT_rich Low_complexity Low_complexity 1 22 0 228 385 0 0 chr13 60610964 60611047 -59133851 - MARNA DNA Mariner -412 174 92 285 341 82 30 chr13 60611466 60611601 -59133297 + L2 LINE L2 2603 2744 -570 396 136 0 0 chr13 60611636 60611695 -59133203 - Tigger5 DNA MER2_type -21 2302 2244 2205 110 0 0 chr13 60612075 60612366 -59132532 + AluSx SINE Alu 1 291 -21 1762 184 0 7 chr13 60612745 60613039 -59131859 + AluJo SINE Alu 1 292 -20 2073 136 0 7 chr13 60613360 60613668 -59131230 + AluJb SINE Alu 1 306 -6 2144 123 3 0 chr13 60615284 60615594 -59129304 - AluSq SINE Alu 0 313 3 2468 74 10 0 chr13 60615846 60616156 -59128742 - AluSp SINE Alu 0 313 1 478 259 19 12 chr13 60617463 60617625 -59127273 + MER103 DNA DNA 4 166 0 22 35 0 0 chr13 60617953 60617982 -59126916 + AT_rich Low_complexity Low_complexity 1 29 0 1440 176 59 42 chr13 60618296 60618603 -59126295 + AluJo SINE Alu 1 312 0 21 0 0 0 chr13 60619803 60619824 -59125074 + AT_rich Low_complexity Low_complexity 1 21 0 247 314 0 41 chr13 60619988 60620109 -59124789 + CT-rich Low_complexity Low_complexity 2 117 0 22 56 0 0 chr13 60621222 60621258 -59123640 + AT_rich Low_complexity Low_complexity 1 36 0 605 160 246 12 chr13 60621542 60621706 -59123192 + MIR SINE MIR 15 217 -45 672 317 89 15 chr13 60622804 60623195 -59121703 + L1ME4a LINE L1 5414 5833 -288 274 200 0 31 chr13 60624987 60625052 -59119846 - MIR SINE MIR -16 246 184 237 262 38 115 chr13 60625348 60625531 -59119367 + MIR SINE MIR 88 256 -6 1793 138 57 46 chr13 60625786 60626156 -59118742 - THE1C LTR MaLR 0 375 2 8257 120 119 38 chr13 60626157 60627616 -59117282 - THE1C-int LTR MaLR 0 1580 4 1722 124 84 70 chr13 60627619 60627989 -59116909 - THE1C LTR MaLR 0 375 1 487 322 30 45 chr13 60629476 60629675 -59115223 - MIR SINE MIR -20 242 47 2512 53 13 0 chr13 60629974 60630275 -59114623 - AluY SINE Alu -6 305 1 579 325 172 47 chr13 60630575 60631052 -59113846 + L3 LINE CR1 798 1387 -190 2503 69 0 3 chr13 60631052 60631357 -59113541 + AluSp SINE Alu 1 304 -9 579 325 172 47 chr13 60631357 60631561 -59113337 + L3 LINE CR1 1387 1564 -13 2399 86 3 16 chr13 60631937 60632250 -59112648 - AluSc SINE Alu 0 309 1 345 323 183 0 chr13 60633292 60633456 -59111442 - MIR SINE MIR -50 212 19 2387 133 42 35 chr13 60633728 60634185 -59110713 + L1MA9 LINE L1 5853 6312 0 353 204 136 0 chr13 60634344 60634432 -59110466 + MIR SINE MIR 111 210 -52 26 0 0 0 chr13 60635721 60635747 -59109151 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr13 60635993 60636025 -59108873 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2067 130 0 7 chr13 60636158 60636442 -59108456 + AluSx SINE Alu 1 282 -30 2021 143 3 10 chr13 60637076 60637377 -59107521 + AluSx SINE Alu 1 299 -13 724 167 23 0 chr13 60637617 60637749 -59107149 - MER20 DNA MER1_type -1 218 84 2629 42 0 0 chr13 60638742 60639053 -59105845 - AluY SINE Alu 0 311 1 228 67 0 0 chr13 60641043 60641073 -59103825 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 2221 92 0 43 chr13 60641426 60641730 -59103168 - AluSq SINE Alu -17 296 6 396 90 60 0 chr13 60641730 60641797 -59103101 + Charlie5 DNA MER1_type 2515 2585 -27 6945 148 16 15 chr13 60642299 60642654 -59102244 + L1M1 LINE L1 4003 4356 -1948 1887 159 0 25 chr13 60642654 60642969 -59101929 - AluJb SINE Alu -5 307 1 6945 148 16 15 chr13 60642969 60644288 -59100610 + L1M1 LINE L1 4356 5673 -631 197 243 0 0 chr13 60645303 60645340 -59099558 + L2 LINE L2 3228 3264 -8 194 322 148 0 chr13 60646065 60646180 -59098718 - L2 LINE L2 -575 2739 2608 24 32 0 0 chr13 60647095 60647126 -59097772 + AT_rich Low_complexity Low_complexity 1 31 0 631 269 27 62 chr13 60647905 60648053 -59096845 - MLT1K LTR MaLR -10 578 441 2542 36 10 7 chr13 60648053 60648358 -59096540 - AluY SINE Alu -5 306 1 631 269 27 62 chr13 60648358 60648465 -59096433 - MLT1K LTR MaLR -147 441 332 289 322 0 26 chr13 60648825 60648940 -59095958 + GA-rich Low_complexity Low_complexity 3 114 0 305 279 96 10 chr13 60649090 60649194 -59095704 + MER5B DNA MER1_type 63 175 -3 389 315 65 22 chr13 60649760 60649944 -59094954 - MIR SINE MIR 0 262 71 21 0 0 0 chr13 60651872 60651893 -59093005 + AT_rich Low_complexity Low_complexity 1 21 0 899 283 47 6 chr13 60652141 60652459 -59092439 + L1MEc LINE L1 32 362 -6034 * 1777 200 58 54 chr13 60652458 60653228 -59091670 + L1ME1 LINE L1 4993 5763 -403 1054 152 152 62 chr13 60653241 60653364 -59091534 + AluJo SINE Alu 24 135 -177 2574 49 0 3 chr13 60653364 60653669 -59091229 + AluY SINE Alu 1 304 -7 1054 152 152 62 chr13 60653669 60653801 -59091097 + AluJo SINE Alu 135 302 -10 1273 203 31 60 chr13 60653808 60654226 -59090672 + L1ME1 LINE L1 5756 6161 -5 1859 180 0 3 chr13 60654275 60654580 -59090318 + AluJb SINE Alu 1 304 -8 11640 55 12 1 chr13 60654722 60656753 -59088145 + L1PA10 LINE L1 3888 5940 -228 22 0 0 0 chr13 60656946 60656968 -59087930 + AT_rich Low_complexity Low_complexity 1 22 0 1668 114 165 73 chr13 60657063 60657432 -59087466 - MER4A LTR ERV1 -1 663 261 570 141 0 10 chr13 60657432 60657531 -59087367 - MER4A LTR ERV1 -566 98 1 356 281 39 127 chr13 60657581 60657841 -59087057 - MIR SINE MIR -6 256 20 2436 177 76 66 chr13 60657890 60658574 -59086324 - LTR8 LTR ERV1 0 691 1 243 189 0 0 chr13 60658718 60658771 -59086127 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 4095 142 114 9 chr13 60659606 60660352 -59084546 - LTR1B LTR ERV1 -2 824 1 585 146 11 0 chr13 60660441 60660530 -59084368 - AluSx SINE Alu -29 281 192 1058 135 0 0 chr13 60660531 60660672 -59084226 - AluSx SINE Alu -171 141 1 400 273 102 6 chr13 60660881 60661057 -59083841 - MIR SINE MIR -65 197 5 198 150 0 0 chr13 60661551 60661591 -59083307 + (A)n Simple_repeat Simple_repeat 1 40 0 1007 135 36 10 chr13 60662434 60662626 -59082272 - MER67C LTR ERV1 0 710 514 4299 91 11 19 chr13 60662648 60663294 -59081604 - LTR8 LTR ERV1 -28 663 23 1180 209 154 48 chr13 60663322 60663758 -59081140 - MER74A LTR ERVL -76 482 1 1106 228 120 11 chr13 60663758 60664140 -59080758 - MER90 LTR ERV1 -143 432 9 414 286 9 18 chr13 60664141 60664253 -59080645 - MIR SINE MIR -82 180 70 2113 114 0 0 chr13 60664980 60665280 -59079618 + AluSg SINE Alu 1 300 0 1059 100 14 0 chr13 60665445 60665585 -59079313 + AluSg/x SINE Alu 157 298 -14 240 283 272 0 chr13 60667411 60667503 -59077395 + L2 LINE L2 3139 3255 -17 1168 246 87 30 chr13 60667535 60667838 -59077060 + LTR16A LTR ERVL 1 336 -114 2136 109 7 14 chr13 60667838 60667995 -59076903 - AluSx SINE Alu -20 292 136 2386 95 0 0 chr13 60667995 60668301 -59076597 - AluSg1 SINE Alu -3 306 1 2136 109 7 14 chr13 60668301 60668437 -59076461 - AluSx SINE Alu -176 136 1 1168 246 87 30 chr13 60668437 60668559 -59076339 + LTR16A LTR ERVL 336 450 0 420 310 43 21 chr13 60668693 60668880 -59076018 + MIR3 SINE MIR 5 195 -13 195 219 24 0 chr13 60669403 60669444 -59075454 - L2 LINE L2 -6 3307 3266 1660 200 0 7 chr13 60669499 60669789 -59075109 + AluJo SINE Alu 1 288 -24 6553 65 9 3 chr13 60670032 60670945 -59073953 - L1PA8 LINE L1 -1 6171 5254 500 252 9 9 chr13 60672140 60672255 -59072643 + L2 LINE L2 3180 3294 -19 470 254 70 22 chr13 60672407 60672635 -59072263 - L1MC5 LINE L1 -44 7917 7679 4098 126 59 11 chr13 60672663 60673394 -59071504 - L1PA13 LINE L1 -1 6162 5397 * 4492 198 23 1 chr13 60673392 60674389 -59070509 + L1M LINE L1 4384 5401 -759 366 292 20 41 chr13 60674795 60674990 -59069908 + HAL1 LINE L1 2313 2503 -4 196 342 21 58 chr13 60675131 60675212 -59069686 + L2 LINE L2 2561 2643 -671 2045 165 26 5 chr13 60675212 60675594 -59069304 + MLT1B LTR MaLR 1 390 0 196 342 21 58 chr13 60675594 60675702 -59069196 + L2 LINE L2 2643 2743 -571 392 162 0 0 chr13 60675816 60675884 -59069014 + Tigger2 DNA MER2_type 2 69 -2649 265 182 39 13 chr13 60675874 60675951 -59068947 + Tigger2 DNA MER2_type 2273 2351 -367 * 1759 151 76 49 chr13 60675999 60676311 -59068587 + Tigger2 DNA MER2_type 2298 2625 -93 2349 97 7 0 chr13 60676311 60676609 -59068289 - AluSx SINE Alu -12 300 1 1759 151 76 49 chr13 60676609 60676706 -59068192 + Tigger2 DNA MER2_type 2625 2718 0 224 308 0 0 chr13 60677021 60677073 -59067825 + L2 LINE L2 3242 3293 -20 249 318 11 11 chr13 60677323 60677411 -59067487 - MIR3 SINE MIR -1 207 120 269 289 40 0 chr13 60678498 60678574 -59066324 - L2 LINE L2 -38 3275 3197 3026 117 25 4 chr13 60678744 60679222 -59065676 + L1PA16 LINE L1 5668 6155 -11 2015 102 80 0 chr13 60679241 60679516 -59065382 + AluSq SINE Alu 1 297 -16 195 162 0 0 chr13 60679529 60679566 -59065332 + (TA)n Simple_repeat Simple_repeat 2 38 0 1694 263 157 5 chr13 60679611 60680157 -59064741 - L2 LINE L2 -281 3032 2375 2006 143 0 10 chr13 60680157 60680457 -59064441 + AluSx SINE Alu 1 297 -15 1694 263 157 5 chr13 60680457 60680548 -59064350 - L2 LINE L2 -938 2375 2299 256 354 83 28 chr13 60680844 60680988 -59063910 + L2 LINE L2 3119 3270 -2 527 259 135 0 chr13 60681190 60681350 -59063548 + MER5A DNA MER1_type 4 188 -1 894 216 6 0 chr13 60681370 60681551 -59063347 + MER58A DNA MER1_type 40 221 -3 2092 144 0 10 chr13 60681641 60681954 -59062944 - AluSx SINE Alu -2 310 1 23 0 0 0 chr13 60682110 60682133 -59062765 + AT_rich Low_complexity Low_complexity 1 23 0 2073 104 4 0 chr13 60683486 60683765 -59061133 - AluSx SINE Alu -4 308 29 659 217 89 15 chr13 60683868 60684225 -59060673 - MLT1C LTR MaLR -19 448 10 2085 119 0 0 chr13 60684641 60684919 -59059979 - AluSx SINE Alu -34 278 1 1274 256 97 29 chr13 60685393 60686116 -59058782 - HAL1 LINE L1 -725 1782 1011 1082 299 113 38 chr13 60686183 60687021 -59057877 - HAL1 LINE L1 -1599 908 8 427 198 125 0 chr13 60687954 60688050 -59056848 + MER81 DNA DNA 6 113 -1 470 233 0 0 chr13 60688484 60688574 -59056324 + 5S rRNA rRNA 1 90 -31 237 330 68 0 chr13 60689187 60689275 -59055623 - MIR SINE MIR -149 113 20 2271 93 0 0 chr13 60690263 60690553 -59054345 - AluSg SINE Alu -20 290 1 565 192 15 23 chr13 60691655 60691785 -59053113 - FLAM_A SINE Alu 0 142 14 213 211 115 0 chr13 60692672 60692724 -59052174 + MER5A DNA MER1_type 7 64 -125 1508 217 95 39 chr13 60692726 60693243 -59051655 + LTR55 LTR ERV 1 546 -2 608 252 8 0 chr13 60693243 60693370 -59051528 + MER5A DNA MER1_type 62 189 0 2390 185 60 8 chr13 60693453 60693951 -59050947 - MLT1F LTR MaLR 0 542 19 346 326 188 26 chr13 60694266 60694330 -59050568 + L2 LINE L2 2297 2349 -965 2517 170 19 0 chr13 60694330 60694748 -59050150 - MSTB LTR MaLR 0 426 1 346 326 188 26 chr13 60694748 60694987 -59049911 + L2 LINE L2 2349 2649 -665 248 361 142 0 chr13 60694972 60695141 -59049757 - L2 LINE L2 -620 2694 2502 * 377 330 65 97 chr13 60695334 60695685 -59049213 + L2 LINE L2 2933 3272 0 227 159 23 0 chr13 60695830 60695874 -59049024 - L2 LINE L2 -1 3312 3268 896 172 61 0 chr13 60696264 60696427 -59048471 + MER63A DNA MER1_type 1 173 -37 2444 62 3 7 chr13 60698743 60699049 -59045849 - AluY SINE Alu -4 307 3 2455 75 3 3 chr13 60699621 60699926 -59044972 + AluSp SINE Alu 1 305 -8 191 219 0 0 chr13 60700210 60700251 -59044647 - L2 LINE L2 -1 3312 3272 206 136 152 61 chr13 60700465 60700531 -59044367 - MIR SINE MIR -74 188 117 2046 113 27 3 chr13 60700997 60701290 -59043608 + AluSx SINE Alu 1 300 -12 563 213 180 0 chr13 60701719 60701869 -59043029 + MER5A DNA MER1_type 13 189 0 357 289 145 24 chr13 60702203 60702369 -59042529 + MIR SINE MIR 60 245 -17 480 244 77 24 chr13 60702715 60702883 -59042015 + MER5B DNA MER1_type 1 177 -1 402 286 16 8 chr13 60703493 60703619 -59041279 + MIR SINE MIR 133 259 -3 24 0 0 0 chr13 60703896 60703920 -59040978 + AT_rich Low_complexity Low_complexity 1 24 0 293 322 161 22 chr13 60704026 60704256 -59040642 + L2 LINE L2 2487 2748 -566 21 0 0 0 chr13 60704432 60704453 -59040445 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr13 60704800 60704851 -59040047 + AT_rich Low_complexity Low_complexity 1 51 0 5438 160 42 27 chr13 60704865 60706202 -59038696 - L1MA8 LINE L1 -30 6497 5109 2449 89 0 6 chr13 60706202 60706515 -59038383 + AluSp SINE Alu 1 311 -2 5438 160 42 27 chr13 60706515 60707332 -59037566 - L1MA8 LINE L1 -1418 5109 4306 2671 204 59 99 chr13 60707328 60708790 -59036108 - L1MA8 LINE L1 -2619 3763 2408 * 1676 262 98 17 chr13 60708855 60709005 -59035893 - L1MA8 LINE L1 -4296 2086 1950 2178 92 10 10 chr13 60709005 60709300 -59035598 + AluSq SINE Alu 1 295 -18 1676 262 98 17 chr13 60709300 60710001 -59034897 - L1MA8 LINE L1 -4432 1950 1108 413 263 0 17 chr13 60710016 60710134 -59034764 - L1MA8 LINE L1 -5771 532 417 1208 296 74 19 chr13 60710206 60710919 -59033979 - L1ME3A LINE L1 -233 5920 5248 303 28 0 0 chr13 60710919 60710955 -59033943 + (TG)n Simple_repeat Simple_repeat 2 37 0 1208 296 74 19 chr13 60710955 60711621 -59033277 - L1ME3A LINE L1 -905 5248 4459 337 220 63 73 chr13 60712999 60713105 -59031793 - L1 LINE L1 -1678 4451 4346 2081 130 3 3 chr13 60713105 60713404 -59031494 + AluSg SINE Alu 1 299 -11 337 220 63 73 chr13 60713404 60713488 -59031410 - L1 LINE L1 -1783 4346 4263 654 238 157 0 chr13 60713514 60713737 -59031161 + MIR SINE MIR 3 260 -2 385 233 84 124 chr13 60714165 60714512 -59030386 - L1ME3A LINE L1 -4572 1738 1406 403 282 65 31 chr13 60714557 60715172 -59029726 - L1ME3A LINE L1 -4864 1255 562 2240 103 0 0 chr13 60715600 60715892 -59029006 - AluSg SINE Alu -18 292 1 439 317 54 31 chr13 60715916 60716140 -59028758 - MIR SINE MIR 0 262 34 265 256 23 0 chr13 60716251 60716337 -59028561 - L1MC4 LINE L1 -106 7936 7849 261 0 0 0 chr13 60717409 60717438 -59027460 + (CA)n Simple_repeat Simple_repeat 2 30 0 3078 103 15 9 chr13 60718073 60718531 -59026367 - L1PA10 LINE L1 -5 6163 5703 392 286 113 0 chr13 60719507 60719640 -59025258 + MIR SINE MIR 40 187 -75 1752 161 29 71 chr13 60719699 60719924 -59024974 - MSTD LTR MaLR -2 394 192 2035 130 36 0 chr13 60719924 60720225 -59024673 - AluSx SINE Alu 0 312 1 1752 161 29 71 chr13 60720225 60720410 -59024488 - MSTD LTR MaLR -204 192 1 424 208 63 31 chr13 60722972 60723131 -59021767 - MER106B DNA MER1_type 0 1059 896 1496 187 50 47 chr13 60723158 60723522 -59021376 + MLT1A1 LTR MaLR 1 365 0 194 404 103 13 chr13 60723554 60723710 -59021188 - L2 LINE L2 -186 3086 2917 3960 135 20 12 chr13 60723710 60723887 -59021011 + MER39B LTR ERV1 1 175 -478 2258 101 7 0 chr13 60723887 60724174 -59020724 + AluSg SINE Alu 1 289 -21 3960 135 20 12 chr13 60724174 60724642 -59020256 + MER39B LTR ERV1 175 651 -2 329 317 142 17 chr13 60724993 60725152 -59019746 + MIR SINE MIR 11 185 -59 1417 188 51 20 chr13 60725220 60725305 -59019593 + MLT1A1 LTR MaLR 4 85 -280 1804 203 28 18 chr13 60725305 60725695 -59019203 + MSTD LTR MaLR 1 394 -2 1417 188 51 20 chr13 60725695 60725960 -59018938 + MLT1A1 LTR MaLR 85 365 0 3125 265 37 56 chr13 60725969 60727176 -59017722 + ERVL-E LTR ERVL 1375 2558 -3206 928 266 5 69 chr13 60727177 60727532 -59017366 + MLT2C1 LTR ERVL 23 430 -34 1012 297 28 40 chr13 60727553 60727981 -59016917 + ERVL-E LTR ERVL 2583 3005 -2759 * 4083 243 58 45 chr13 60727979 60728562 -59016336 + ERVL-E LTR ERVL 3156 3730 -2034 2755 60 11 0 chr13 60728562 60728910 -59015988 + L1PA6 LINE L1 5794 6145 -9 4083 243 58 45 chr13 60728910 60729751 -59015147 + ERVL-E LTR ERVL 3730 4598 -1166 2138 112 7 10 chr13 60729751 60730056 -59014842 - AluSc SINE Alu -5 304 1 4083 243 58 45 chr13 60730056 60730227 -59014671 + ERVL-E LTR ERVL 4598 4765 -999 411 265 80 20 chr13 60730545 60730745 -59014153 + ERVL-E LTR ERVL 5288 5499 -265 974 177 0 19 chr13 60730766 60730924 -59013974 + FRAM SINE Alu 1 155 -21 919 149 119 0 chr13 60731079 60731273 -59013625 + MER46A DNA MER2_type 5 221 -15 2022 248 48 48 chr13 60731384 60732008 -59012890 + MLT2E LTR ERVL 2 625 -3 986 277 123 16 chr13 60732011 60732434 -59012464 + L2 LINE L2 1580 2047 -1267 18398 151 28 16 chr13 60732447 60737048 -59007850 - L1P3 LINE L1 -1737 4724 2 186 43 0 0 chr13 60737222 60737245 -59007653 + (T)n Simple_repeat Simple_repeat 1 23 0 1679 164 23 0 chr13 60737367 60737671 -59007227 - L1MC1 LINE L1 -5 6328 6018 1410 293 56 63 chr13 60737682 60739360 -59005538 + L1PA12 LINE L1 1 2219 -5362 725 190 121 0 chr13 60739344 60739518 -59005380 + L1PA16 LINE L1 5972 6166 0 * 1147 127 32 124 chr13 60739520 60739618 -59005280 - L1MC1 LINE L1 -310 6034 5929 590 124 0 0 chr13 60739618 60739707 -59005191 - L1MC1 LINE L1 0 6333 6245 1147 127 32 124 chr13 60739707 60739923 -59004975 - L1MC1 LINE L1 -415 5929 5749 264 302 0 0 chr13 60739928 60739991 -59004907 + L2 LINE L2 3188 3250 -22 2414 69 0 7 chr13 60739993 60740297 -59004601 - AluY SINE Alu -9 302 1 12151 191 29 37 chr13 60740321 60740659 -59004239 - L1PA16 LINE L1 -8 6861 6522 2293 110 0 7 chr13 60740659 60740967 -59003931 - AluSg1 SINE Alu 0 309 4 12151 191 29 37 chr13 60740967 60745107 -58999791 - L1PA16 LINE L1 -347 6522 2792 2080 131 14 0 chr13 60745107 60745397 -58999501 - AluSx SINE Alu -18 294 1 12151 191 29 37 chr13 60745397 60748163 -58996735 - L1PA16 LINE L1 -4077 2792 6 181 395 25 0 chr13 60748358 60748439 -58996459 + L2 LINE L2 2567 2649 -665 306 73 0 0 chr13 60749245 60749286 -58995612 + (CA)n Simple_repeat Simple_repeat 1 41 0 268 283 141 0 chr13 60749859 60749958 -58994940 + MIR SINE MIR 32 144 -64 22 35 0 0 chr13 60750272 60750301 -58994597 + AT_rich Low_complexity Low_complexity 1 29 0 589 308 73 12 chr13 60750435 60750682 -58994216 - MIR SINE MIR 0 262 1 426 336 39 81 chr13 60751062 60751321 -58993577 + L2 LINE L2 3016 3263 -9 560 289 41 53 chr13 60751561 60751900 -58992998 - MLT1I LTR MaLR -4 405 71 591 143 0 0 chr13 60752885 60752983 -58991915 - L1P4 LINE L1 -631 5535 5438 1466 163 43 0 chr13 60752983 60753237 -58991661 + L1PA16 LINE L1 5885 6153 -13 24 0 0 0 chr13 60753248 60753272 -58991626 + AT_rich Low_complexity Low_complexity 1 24 0 530 261 149 20 chr13 60753277 60753526 -58991372 - MLT1J1 LTR MaLR -123 323 43 477 267 97 12 chr13 60753539 60753704 -58991194 - MIR SINE MIR -70 192 14 462 209 11 0 chr13 60753812 60753903 -58990995 - Tigger7 DNA MER2_type 0 2587 2496 * 2441 199 48 0 chr13 60753902 60754400 -58990498 - Tigger7 DNA MER2_type -1965 522 1 304 267 80 83 chr13 60754575 60754854 -58990044 - L1MC/D LINE L1 -2132 5676 5397 2381 220 108 19 chr13 60754854 60755486 -58989412 + MER76 LTR ERV 1 688 0 304 267 80 83 chr13 60755486 60755629 -58989269 - L1MC/D LINE L1 -2411 5397 5255 359 276 171 44 chr13 60755847 60756191 -58988707 - L1MC/D LINE L1 -1127 5019 4632 453 292 0 0 chr13 60756274 60756445 -58988453 + (TA)n Simple_repeat Simple_repeat 2 172 0 228 236 45 22 chr13 60756445 60756534 -58988364 - L1MC4 LINE L1 -1337 6705 6615 228 269 0 65 chr13 60756547 60756640 -58988258 - L1MC4 LINE L1 -1341 6701 6615 237 281 23 7 chr13 60756926 60757052 -58987846 + MIR SINE MIR 8 224 -38 194 333 163 31 chr13 60757672 60757801 -58987097 + L2 LINE L2 2598 2743 -571 226 338 30 82 chr13 60757934 60758203 -58986695 + L2 LINE L2 3018 3272 0 245 346 15 23 chr13 60758267 60758397 -58986501 + MIR3 SINE MIR 1 129 -79 2274 108 0 3 chr13 60759416 60759722 -58985176 - AluSx SINE Alu -7 305 1 270 219 57 73 chr13 60760387 60760510 -58984388 - L1ME3A LINE L1 -88 6082 5962 1143 231 142 58 chr13 60760660 60761401 -58983497 - L1MC5 LINE L1 -472 7489 6687 1587 185 31 39 chr13 60761497 60761853 -58983045 + MLT1A1 LTR MaLR 13 365 0 24 0 0 0 chr13 60761969 60761993 -58982905 + AT_rich Low_complexity Low_complexity 1 24 0 2177 142 31 0 chr13 60761998 60762351 -58982547 - THE1B LTR MaLR 0 364 1 4865 150 54 25 chr13 60762351 60763029 -58981869 - L1MA5A LINE L1 -14 6283 5626 2293 119 0 0 chr13 60763029 60763324 -58981574 - AluSg SINE Alu -15 295 1 4865 150 54 25 chr13 60763324 60763613 -58981285 - L1MA5A LINE L1 -671 5626 5347 318 98 0 0 chr13 60763613 60763664 -58981234 + (CTTG)n Simple_repeat Simple_repeat 2 52 0 4865 150 54 25 chr13 60763664 60764015 -58980883 - L1MA5A LINE L1 -950 5347 4943 780 295 51 30 chr13 60767459 60767832 -58977066 + MLT1J1 LTR MaLR 58 438 -8 201 295 154 0 chr13 60768065 60768143 -58976755 - L2 LINE L2 -3 3310 3221 24 0 0 0 chr13 60769279 60769303 -58975595 + AT_rich Low_complexity Low_complexity 1 24 0 275 261 29 14 chr13 60771435 60771504 -58973394 + L2 LINE L2 2685 2754 -560 335 281 55 9 chr13 60771885 60772037 -58972861 - L1M3 LINE L1 -691 5477 5318 702 100 12 53 chr13 60772037 60772207 -58972691 + (TTCC)n Simple_repeat Simple_repeat 3 165 0 875 218 0 0 chr13 60772228 60772375 -58972523 - FRAM SINE Alu -29 147 1 317 304 131 10 chr13 60772462 60773024 -58971874 - L1M3 LINE L1 -933 5213 4573 392 310 0 70 chr13 60773470 60773628 -58971270 - MIR3 SINE MIR -5 203 57 1112 109 17 0 chr13 60774761 60774936 -58969962 - L1MA5A LINE L1 -2 6295 6118 2169 191 2 5 chr13 60775247 60775644 -58969254 - MLT2C2 LTR ERVL -68 396 1 313 300 0 12 chr13 60775809 60775889 -58969009 + L2 LINE L2 3137 3215 -57 1625 124 4 8 chr13 60776293 60776551 -58968347 + L1PB4 LINE L1 5897 6153 -3 183 114 0 0 chr13 60776561 60776596 -58968302 + (A)n Simple_repeat Simple_repeat 1 35 0 255 388 29 0 chr13 60777262 60777365 -58967533 - MIR SINE MIR -137 125 20 458 305 109 14 chr13 60777585 60777795 -58967103 - MIR SINE MIR -31 231 2 269 340 43 74 chr13 60777805 60777892 -58967006 - L2 LINE L2 0 3272 3191 4233 128 50 16 chr13 60777892 60778628 -58966270 - L1PA16 LINE L1 -1 6165 5405 269 340 43 74 chr13 60778628 60778702 -58966196 - L2 LINE L2 -81 3191 3116 315 340 12 74 chr13 60778847 60779091 -58965807 - L2 LINE L2 -218 3054 2826 2134 162 29 0 chr13 60779268 60779681 -58965217 - L1P LINE L1 -3476 2670 2246 3752 103 11 21 chr13 60779681 60780240 -58964658 + L1PA13 LINE L1 5600 6155 -8 181 331 221 7 chr13 60780560 60780696 -58964202 - MIR SINE MIR -45 217 53 22 0 0 0 chr13 60782495 60782517 -58962381 + AT_rich Low_complexity Low_complexity 1 22 0 486 286 122 25 chr13 60782753 60782998 -58961900 + MLT1K LTR MaLR 307 575 -13 2045 176 112 48 chr13 60783198 60783745 -58961153 + L1MD3 LINE L1 7404 7985 -10 194 219 0 24 chr13 60784275 60784316 -58960582 + L2 LINE L2 3257 3296 -17 652 264 87 17 chr13 60784408 60784639 -58960259 - MIR SINE MIR -14 248 2 40693 36 22 2 chr13 60784707 60790739 -58954159 + L1PA3 LINE L1 1 6155 0 189 0 0 0 chr13 60791085 60791106 -58953792 + (CA)n Simple_repeat Simple_repeat 1 21 0 1865 149 48 36 chr13 60792614 60792970 -58951928 + THE1B LTR MaLR 1 360 -4 243 247 67 45 chr13 60793963 60794052 -58950846 + MER81 DNA DNA 2 92 -22 442 300 167 0 chr13 60795259 60795409 -58949489 + MER5A DNA MER1_type 9 183 -6 318 314 41 21 chr13 60796299 60796448 -58948450 - MER5A DNA MER1_type -8 170 16 1990 143 0 0 chr13 60796824 60797104 -58947794 - AluJb SINE Alu -31 281 2 252 122 0 0 chr13 60797316 60797357 -58947541 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 313 112 21 chr13 60800011 60800244 -58944654 - MIR SINE MIR 0 262 9 21 0 0 0 chr13 60800324 60800345 -58944553 + AT_rich Low_complexity Low_complexity 1 21 0 2123 110 0 0 chr13 60800385 60800676 -58944222 + AluSx SINE Alu 1 291 -21 348 88 0 0 chr13 60801660 60801717 -58943181 + (T)n Simple_repeat Simple_repeat 1 57 0 195 42 0 0 chr13 60801910 60801934 -58942964 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 573 245 0 36 chr13 60802160 60802299 -58942599 - LTR28 LTR ERV1 0 1020 887 2040 204 230 73 chr13 60802302 60803179 -58941719 - LTR28 LTR ERV1 -37 983 1 230 200 0 18 chr13 60804261 60804316 -58940582 + T-rich Low_complexity Low_complexity 5 58 0 195 145 16 32 chr13 60804911 60804973 -58939925 + GA-rich Low_complexity Low_complexity 1 61 0 287 337 10 10 chr13 60805743 60805945 -58938953 + L1M4 LINE L1 4244 4445 -1701 268 244 92 42 chr13 60806242 60806361 -58938537 + L1ME4a LINE L1 5954 6078 -43 244 318 23 23 chr13 60809617 60809705 -58935193 - L2 LINE L2 -16 3256 3169 607 305 98 64 chr13 60810314 60810551 -58934347 - ERVL LTR ERVL -708 5056 4828 2650 32 3 0 chr13 60810551 60810861 -58934037 + AluY SINE Alu 1 311 0 607 305 98 64 chr13 60810861 60811849 -58933049 - ERVL LTR ERVL -936 4828 3727 2020 157 89 89 chr13 60813652 60814167 -58930731 + MLT2B2 LTR ERVL 1 515 0 296 299 44 88 chr13 60814405 60814542 -58930356 - L2 LINE L2 -5 3267 3137 2193 139 19 27 chr13 60814723 60815090 -58929808 + THE1B LTR MaLR 1 364 0 5449 117 2 39 chr13 60815108 60815719 -58929179 - THE1-int LTR MaLR -516 1064 432 7600 29 0 0 chr13 60815719 60816696 -58928202 - L1PA3 LINE L1 -3 6152 5175 13799 23 0 0 chr13 60816705 60819090 -58925808 - L1PA2 LINE L1 0 6155 3771 5449 117 2 39 chr13 60819090 60819349 -58925549 - THE1-int LTR MaLR -1156 424 216 3861 86 0 4 chr13 60819344 60819865 -58925033 + THE1B-int LTR MaLR 1057 1575 -5 * 2172 131 19 45 chr13 60819869 60820243 -58924655 + THE1B LTR MaLR 1 364 0 195 330 45 23 chr13 60820309 60820397 -58924501 - L2 LINE L2 -309 2963 2874 893 321 93 42 chr13 60820496 60821020 -58923878 - L2 LINE L2 -559 2755 2205 2663 129 14 0 chr13 60821026 60821443 -58923455 - MER57B LTR ERV1 -11 423 1 233 315 117 30 chr13 60821443 60821640 -58923258 - L2 LINE L2 -1108 2206 1993 198 221 0 144 chr13 60821643 60821747 -58923151 - L2 LINE L2 -1605 1709 1621 867 293 94 52 chr13 60822086 60822651 -58922247 - ERVL LTR ERVL -287 5367 4808 1149 310 60 19 chr13 60822726 60823158 -58921740 + LTR16A LTR ERVL 1 450 0 628 321 50 0 chr13 60823181 60823443 -58921455 - ERVL LTR ERVL -1092 4672 4398 204 125 42 21 chr13 60823443 60823491 -58921407 + (TA)n Simple_repeat Simple_repeat 1 49 0 227 241 85 40 chr13 60823925 60824124 -58920774 + L1ME4a LINE L1 5912 6119 -2 23 33 0 0 chr13 60827374 60827404 -58917494 + AT_rich Low_complexity Low_complexity 1 30 0 2155 120 7 19 chr13 60828122 60828431 -58916467 + AluSx SINE Alu 1 305 -7 2149 118 3 7 chr13 60828989 60829295 -58915603 - AluSq SINE Alu -8 305 1 761 281 28 9 chr13 60830750 60830967 -58913931 - MIR SINE MIR -28 234 14 464 300 201 9 chr13 60831211 60831534 -58913364 - MLT1J2 LTR MaLR -1 449 65 279 323 115 15 chr13 60833580 60833710 -58911188 - MIR SINE MIR 0 262 120 741 213 35 5 chr13 60834895 60835092 -58909806 - Charlie4 DNA MER1_type 0 1961 1759 * 809 229 62 4 chr13 60835091 60835318 -58909580 - Charlie4 DNA MER1_type -1704 257 18 414 294 116 14 chr13 60835513 60835805 -58909093 + HAL1b LINE L1 986 1307 -41 3283 100 67 3 chr13 60835817 60836534 -58908364 - L1PA14 LINE L1 -1 7598 6722 * 14014 182 18 26 chr13 60836533 60839772 -58905126 - L1PA14 LINE L1 -1601 5983 2751 2145 134 0 3 chr13 60839772 60840077 -58904821 - AluSq SINE Alu -9 304 1 14014 182 18 26 chr13 60840077 60840533 -58904365 - L1PA14 LINE L1 -4833 2751 2293 231 255 0 0 chr13 60840648 60840695 -58904203 + MER115 DNA AcHobo 1 47 -646 188 355 32 0 chr13 60840699 60840761 -58904137 - L2 LINE L2 -48 3265 3202 25 31 0 0 chr13 60841423 60841455 -58903443 + AT_rich Low_complexity Low_complexity 1 32 0 297 284 53 11 chr13 60841496 60841591 -58903307 + MIR SINE MIR 110 208 -54 321 111 0 0 chr13 60841594 60841639 -58903259 - FAM SINE Alu -14 165 121 1568 190 105 0 chr13 60841683 60841988 -58902910 - MER1B DNA MER1_type 0 337 1 241 286 132 0 chr13 60841999 60842090 -58902808 - L2 LINE L2 -12 3301 3199 499 248 13 25 chr13 60842505 60842521 -58902377 - L1MA10 LINE L1 0 6334 6319 1431 205 150 92 chr13 60842521 60843096 -58901802 - L1ME2 LINE L1 -8 6156 5549 2507 97 28 0 chr13 60843173 60843535 -58901363 - L1PA13 LINE L1 0 6163 5792 336 48 0 0 chr13 60843536 60843578 -58901320 + (TG)n Simple_repeat Simple_repeat 2 43 0 267 228 22 0 chr13 60843578 60843670 -58901228 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 536 80 23 11 chr13 60843670 60843681 -58901217 - L1PA13 LINE L1 -369 5792 5783 297 0 0 0 chr13 60843681 60843714 -58901184 + (TA)n Simple_repeat Simple_repeat 1 33 0 536 80 23 11 chr13 60843714 60843790 -58901108 - L1PA13 LINE L1 -378 5783 5704 * 872 211 12 0 chr13 60843785 60843951 -58900947 - L1ME2 LINE L1 -606 5560 5393 * 4276 66 11 3 chr13 60843949 60844563 -58900335 - L1P LINE L1 -1267 4879 3996 3774 63 0 0 chr13 60844589 60845065 -58899833 - L1PA7 LINE L1 -3 6151 5676 1531 245 72 3 chr13 60845088 60845729 -58899169 - L1ME2 LINE L1 -2945 3201 2517 1335 248 52 9 chr13 60845750 60846169 -58898729 - L1M4 LINE L1 -1083 5063 4627 2803 157 55 6 chr13 60846193 60846721 -58898177 - L1PA16 LINE L1 -5 6161 5608 11498 236 41 16 chr13 60846734 60850125 -58894773 - L1PA16 LINE L1 -709 5457 1991 1437 256 63 24 chr13 60850130 60850494 -58894404 - L1M4 LINE L1 -1538 4608 4213 1883 154 24 27 chr13 60850494 60850870 -58894028 - THE1C LTR MaLR 0 375 1 1437 256 63 24 chr13 60850870 60851059 -58893839 - L1M4 LINE L1 -1933 4213 4033 495 0 0 0 chr13 60851060 60851115 -58893783 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1745 88 0 0 chr13 60851117 60851334 -58893564 - AluY SINE Alu -28 283 67 13479 180 49 52 chr13 60851348 60852118 -58892780 - L1P4 LINE L1 -430 5731 4960 2001 150 3 3 chr13 60852118 60852424 -58892474 + AluSx SINE Alu 3 308 -4 13479 180 49 52 chr13 60852424 60852931 -58891967 - L1P4 LINE L1 -1201 4960 4453 1101 112 0 0 chr13 60852931 60853083 -58891815 - AluSg/x SINE Alu 0 310 159 13479 180 49 52 chr13 60853083 60855201 -58889697 - L1P4 LINE L1 -1708 4453 2330 2050 148 3 0 chr13 60855201 60855498 -58889400 - AluSx SINE Alu -14 298 1 13479 180 49 52 chr13 60855498 60855717 -58889181 - L1P4 LINE L1 -3831 2330 2112 2108 123 3 3 chr13 60855717 60856019 -58888879 - AluSg SINE Alu -8 302 1 13479 180 49 52 chr13 60856019 60856158 -58888740 - L1P4 LINE L1 -4049 2112 1843 2057 206 18 28 chr13 60856127 60856631 -58888267 - L1PA15-16 LINE L1 -4036 3548 3050 * 5842 144 48 1 chr13 60856639 60857584 -58887314 - L1PA15-16 LINE L1 -4812 2769 1781 3822 194 45 9 chr13 60857580 60858647 -58886251 - L1MB1 LINE L1 -221 5947 4828 * 303 175 0 0 chr13 60858647 60858704 -58886194 + (TA)n Simple_repeat Simple_repeat 1 57 0 491 194 6 144 chr13 60858705 60858765 -58886133 - L1MB1 LINE L1 -1624 4522 4455 2112 138 0 0 chr13 60858765 60859070 -58885828 - AluSx SINE Alu -7 305 1 491 194 6 144 chr13 60859070 60859189 -58885709 - L1MB1 LINE L1 -1691 4455 4368 2165 117 7 0 chr13 60859761 60860070 -58884828 + AluSx SINE Alu 1 311 -1 299 104 0 0 chr13 60860457 60860505 -58884393 + L1MA3 LINE L1 6258 6305 0 22 56 0 0 chr13 60860505 60860541 -58884357 + AT_rich Low_complexity Low_complexity 1 36 0 205 319 67 67 chr13 60860776 60860911 -58883987 - L2 LINE L2 -1 3271 3137 430 299 29 7 chr13 60861715 60861852 -58883046 + MIR SINE MIR 52 191 -71 244 170 91 212 chr13 60863158 60863323 -58881575 - MLT1H LTR MaLR 0 549 405 707 110 0 0 chr13 60864514 60864614 -58880284 + HY3 scRNA scRNA 1 100 -1 316 314 107 0 chr13 60865396 60865517 -58879381 + L3 LINE CR1 1313 1446 -131 249 247 253 32 chr13 60865831 60865985 -58878913 + MIR3 SINE MIR 11 198 -10 363 361 149 26 chr13 60866355 60866704 -58878194 + L2 LINE L2 2843 3234 -38 295 347 49 14 chr13 60866726 60866870 -58878028 + MIR3 SINE MIR 50 198 -10 659 255 59 20 chr13 60867004 60867208 -58877690 - MIR SINE MIR -34 228 17 254 250 0 17 chr13 60868761 60868821 -58876077 + (TG)n Simple_repeat Simple_repeat 2 60 0 2393 84 3 0 chr13 60870692 60871001 -58873897 - AluY SINE Alu -1 310 1 210 143 0 0 chr13 60871423 60871458 -58873440 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 184 0 0 chr13 60871558 60871596 -58873302 + (CATA)n Simple_repeat Simple_repeat 3 40 0 1021 211 116 50 chr13 60871616 60871934 -58872964 - MLT2D LTR ERVL -56 341 3 274 237 0 17 chr13 60871953 60872012 -58872886 - MER69 DNA AcHobo 0 2526 2469 220 340 117 0 chr13 60872283 60872377 -58872521 + L2 LINE L2 3199 3303 -10 473 281 117 67 chr13 60872562 60872982 -58871916 - MLT1J1 LTR MaLR -1 445 5 242 246 98 0 chr13 60873236 60873297 -58871601 - MIR SINE MIR -86 176 110 854 209 211 41 chr13 60874054 60874428 -58870470 - MER69 DNA AcHobo -90 2436 1975 2188 136 0 0 chr13 60874428 60874738 -58870160 - AluSg SINE Alu 0 310 1 854 209 211 41 chr13 60874738 60874803 -58870095 - MER69 DNA AcHobo -551 1975 1922 195 69 0 0 chr13 60874805 60874834 -58870064 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 43275 43 4 2 chr13 60874834 60880940 -58863958 - L1PA3 LINE L1 -13 6142 22 1162 204 111 35 chr13 60880964 60881386 -58863512 - MER69 DNA AcHobo -621 1905 1452 549 322 83 23 chr13 60881376 60881640 -58863258 - MER69 DNA AcHobo -2246 280 1 * 2137 173 75 39 chr13 60881804 60882295 -58862603 - MER67D LTR ERV1 -5 509 1 498 304 47 12 chr13 60882510 60882681 -58862217 - MLT1I LTR MaLR -232 177 1 400 307 73 27 chr13 60883063 60883213 -58861685 + L2 LINE L2 3115 3271 -1 297 331 103 6 chr13 60883236 60883411 -58861487 + L3b LINE CR1 1303 1494 -89 340 352 64 28 chr13 60886684 60886934 -58857964 + MIR SINE MIR 4 262 0 394 224 59 59 chr13 60887174 60887344 -58857554 + MER96B DNA MER1_type? 3 172 -245 4054 35 4 0 chr13 60887468 60887952 -58856946 - L1PA4 LINE L1 -5 6150 5665 5380 222 46 15 chr13 60888962 60891509 -58853389 - L1MD1 LINE L1 -24 6612 3981 599 155 17 0 chr13 60891526 60891642 -58853256 + CT-rich Low_complexity Low_complexity 2 119 0 589 144 0 0 chr13 60891643 60891733 -58853165 - HY4 scRNA scRNA -2 91 2 447 322 25 4 chr13 60891733 60891972 -58852926 - L1MD1 LINE L1 -2572 3968 3725 415 104 0 0 chr13 60891977 60892044 -58852854 - L1MA7 LINE L1 -1 6290 6224 912 200 69 8 chr13 60892049 60892402 -58852496 - L1MD1 LINE L1 -3720 2820 2404 2169 135 3 0 chr13 60892402 60892713 -58852185 - AluJb SINE Alu 0 312 1 912 200 69 8 chr13 60892713 60892849 -58852049 - L1MD1 LINE L1 -4136 2404 2278 1248 201 22 15 chr13 60892849 60893123 -58851775 - AluJo SINE Alu -5 307 32 216 0 0 0 chr13 60893124 60893148 -58851750 + (TATG)n Simple_repeat Simple_repeat 2 25 0 4262 250 65 22 chr13 60893150 60894344 -58850554 - L1MD1 LINE L1 -5283 1257 13 21 0 0 0 chr13 60894485 60894506 -58850392 + AT_rich Low_complexity Low_complexity 1 21 0 320 288 151 20 chr13 60894928 60895074 -58849824 + MIR SINE MIR 72 236 -26 268 182 91 20 chr13 60895108 60895207 -58849691 - L1 LINE L1 -1800 4346 4241 23 0 0 0 chr13 60896923 60896946 -58847952 + AT_rich Low_complexity Low_complexity 1 23 0 351 0 0 0 chr13 60897358 60897397 -58847501 + (TG)n Simple_repeat Simple_repeat 2 40 0 744 58 0 0 chr13 60897910 60898014 -58846884 + AluY SINE Alu 208 311 0 190 330 80 27 chr13 60898915 60899027 -58845871 + L2 LINE L2 2633 2750 -564 379 140 0 0 chr13 60899128 60899185 -58845713 - AluS SINE Alu -15 285 229 22 0 0 0 chr13 60899284 60899306 -58845592 + AT_rich Low_complexity Low_complexity 1 22 0 493 305 69 15 chr13 60899325 60899528 -58845370 - MIR SINE MIR 0 262 49 286 345 97 0 chr13 60899538 60899651 -58845247 + L2 LINE L2 2935 3058 -214 707 247 82 12 chr13 60899846 60900016 -58844882 + MER5A DNA MER1_type 8 189 0 1643 160 16 66 chr13 60900584 60900903 -58843995 - AluJb SINE Alu -9 303 1 43832 43 2 1 chr13 60902141 60908289 -58836609 - L1PA4 LINE L1 -3 6152 1 1572 187 18 4 chr13 60908596 60908874 -58836024 - AluJo SINE Alu -19 293 12 1386 144 148 8 chr13 60908993 60909290 -58835608 + AluSx SINE Alu 1 332 0 201 274 0 0 chr13 60909671 60909722 -58835176 - MIR3 SINE MIR -5 203 153 2693 198 38 47 chr13 60909869 60910527 -58834371 + MER82 DNA MER2_type 2 653 0 235 378 50 25 chr13 60910591 60910792 -58834106 - L3 LINE CR1 -219 1358 1153 680 243 44 56 chr13 60911384 60911635 -58833263 + Charlie8 DNA MER1_type 27 274 -2143 2247 122 3 0 chr13 60912148 60912460 -58832438 - AluSq SINE Alu 0 313 1 203 184 20 20 chr13 60912574 60912623 -58832275 + (CAG)n Simple_repeat Simple_repeat 2 50 0 21 71 0 0 chr13 60913375 60913417 -58831481 + AT_rich Low_complexity Low_complexity 1 42 0 1101 280 51 33 chr13 60913492 60913881 -58831017 - MLT1I LTR MaLR -2 407 12 2184 94 11 0 chr13 60914083 60914421 -58830477 + AluSp SINE Alu 1 341 0 12569 201 58 21 chr13 60914790 60919242 -58825656 - L1MA7 LINE L1 0 7710 3110 3542 258 36 42 chr13 60919241 60921233 -58823665 - L1M2 LINE L1 -4253 2098 247 * 794 225 36 5 chr13 60921237 60921459 -58823439 + L1M3b LINE L1 1273 1501 -4780 818 260 4 50 chr13 60921461 60921703 -58823195 - L1M2 LINE L1 -6043 238 8 25 51 0 0 chr13 60921820 60921859 -58823039 + AT_rich Low_complexity Low_complexity 1 39 0 228 164 36 36 chr13 60921918 60921973 -58822925 - MLT1D LTR MaLR -1 625 571 293 120 0 20 chr13 60921992 60922042 -58822856 - MLT1D LTR MaLR -43 462 414 713 273 20 0 chr13 60922042 60922192 -58822706 + L1M3b LINE L1 428 580 -5701 1591 161 75 42 chr13 60922192 60922527 -58822371 - MLT1D LTR MaLR -91 414 69 1154 246 168 18 chr13 60922575 60923009 -58821889 - MER101B LTR ERV1 -39 531 33 320 95 68 81 chr13 60923046 60923120 -58821778 - MLT1D LTR MaLR -432 73 1 418 336 33 5 chr13 60924464 60924610 -58820288 - MIR SINE MIR -65 143 42 872 233 58 55 chr13 60925943 60926188 -58818710 - MIR SINE MIR -1 261 16 377 276 133 52 chr13 60926659 60926742 -58818156 + MIR SINE MIR 22 97 -165 1970 149 48 25 chr13 60926742 60927098 -58817800 - THE1B LTR MaLR 0 364 1 11036 111 10 1 chr13 60927098 60928664 -58816234 - THE1B-int LTR MaLR 0 1580 1 2242 124 36 17 chr13 60928664 60929020 -58815878 - THE1B LTR MaLR 0 364 2 377 276 133 52 chr13 60929020 60929144 -58815754 + MIR SINE MIR 96 248 -14 194 268 71 0 chr13 60929509 60929565 -58815333 + L2 LINE L2 3213 3272 0 693 261 27 0 chr13 60930992 60931176 -58813722 + MIR SINE MIR 74 262 0 1508 206 50 48 chr13 60931554 60932034 -58812864 + Charlie1b DNA MER1_type 42 522 -1 218 333 32 0 chr13 60932378 60932441 -58812457 - L2 LINE L2 -74 3198 3134 265 237 105 0 chr13 60932845 60932921 -58811977 + MLT1F LTR MaLR 288 371 -171 2198 122 3 0 chr13 60933021 60933325 -58811573 - AluSx SINE Alu -7 305 1 258 206 44 0 chr13 60933444 60933512 -58811386 - MLT1G LTR MaLR -9 581 511 740 277 94 52 chr13 60933522 60933918 -58810980 - HAL1 LINE L1 -1171 1336 899 2021 148 0 0 chr13 60933918 60934215 -58810683 - AluJb SINE Alu -15 297 1 740 277 94 52 chr13 60934215 60934489 -58810409 - HAL1 LINE L1 -1608 899 638 268 281 256 0 chr13 60935394 60935515 -58809383 + L2 LINE L2 3121 3272 0 192 156 0 0 chr13 60935694 60935726 -58809172 - MIR SINE MIR -26 236 205 421 235 0 0 chr13 60936006 60936087 -58808811 + L2 LINE L2 3232 3312 -1 228 299 122 0 chr13 60936926 60937033 -58807865 + L2 LINE L2 3181 3300 -13 19501 182 28 10 chr13 60939011 60939980 -58804918 - L1PA13 LINE L1 -12 6802 5852 207 0 0 0 chr13 60939980 60940003 -58804895 + (TG)n Simple_repeat Simple_repeat 2 24 0 19501 182 28 10 chr13 60940003 60945696 -58799202 - L1PA13 LINE L1 -962 5852 3 204 311 66 0 chr13 60946082 60946143 -58798755 + MIR SINE MIR 91 155 -107 813 235 22 0 chr13 60946145 60946328 -58798570 - MER5A DNA MER1_type 0 189 3 290 282 204 45 chr13 60947079 60947299 -58797599 + MIR SINE MIR 7 261 -1 1726 146 75 39 chr13 60947645 60948007 -58796891 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr13 60949287 60949309 -58795589 + AT_rich Low_complexity Low_complexity 1 22 0 237 98 0 0 chr13 60949398 60949439 -58795459 + (T)n Simple_repeat Simple_repeat 1 41 0 189 345 41 21 chr13 60950058 60950203 -58794695 + MIR SINE MIR 61 208 -54 180 115 0 0 chr13 60950316 60950342 -58794556 + MER5A DNA MER1_type 88 113 -76 1216 265 107 51 chr13 60950458 60950971 -58793927 - MLT1F LTR MaLR 0 542 1 457 209 62 168 chr13 60951053 60951393 -58793505 - MLT1F-int LTR MaLR -107 1264 961 22 35 0 0 chr13 60951988 60952017 -58792881 + AT_rich Low_complexity Low_complexity 1 29 0 2023 115 7 36 chr13 60952071 60952376 -58792522 + AluSx SINE Alu 1 296 -16 276 330 121 33 chr13 60952912 60953185 -58791713 + L2 LINE L2 2677 2973 -341 183 306 235 0 chr13 60953347 60953432 -58791466 + L2 LINE L2 3209 3313 0 2143 139 14 25 chr13 60953494 60953862 -58791036 + THE1B LTR MaLR 1 364 0 767 277 68 0 chr13 60953880 60954115 -58790783 + MIR SINE MIR 9 259 -3 271 298 149 0 chr13 60954283 60954377 -58790521 + L2 LINE L2 3200 3307 -6 407 281 54 27 chr13 60955809 60955994 -58788904 + MIR SINE MIR 8 197 -65 322 301 88 9 chr13 60956459 60956572 -58788326 + MIR SINE MIR 53 174 -88 599 196 11 95 chr13 60956804 60956983 -58787915 - MER103 DNA DNA -1 165 2 1478 162 18 128 chr13 60957319 60957708 -58787190 + MER7A DNA MER2_type 1 344 -2 704 200 0 8 chr13 60957909 60958039 -58786859 + AluJo SINE Alu 6 134 -178 406 171 0 26 chr13 60958076 60958152 -58786746 + AluJo SINE Alu 138 211 -101 1803 196 31 58 chr13 60959370 60959850 -58785048 - MLT1C LTR MaLR 0 467 1 340 248 16 11 chr13 60960045 60960179 -58784719 - MER5B DNA MER1_type 0 178 2 216 184 0 0 chr13 60960821 60960870 -58784028 + (TG)n Simple_repeat Simple_repeat 2 50 0 383 342 0 0 chr13 60961871 60961991 -58782907 + L2 LINE L2 3193 3312 -1 186 43 0 0 chr13 60962413 60962436 -58782462 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr13 60963983 60964012 -58780886 + AT_rich Low_complexity Low_complexity 1 29 0 677 305 88 63 chr13 60964370 60964813 -58780085 - L2 LINE L2 -1 3312 2859 1337 57 0 0 chr13 60964835 60964993 -58779905 + AluY SINE Alu 130 287 -24 301 68 0 34 chr13 60965000 60965059 -58779839 + (CAAAAA)n Simple_repeat Simple_repeat 5 61 0 2346 261 100 58 chr13 60965071 60966050 -58778848 - L2 LINE L2 -509 2805 1786 21 0 0 0 chr13 60966246 60966267 -58778631 + AT_rich Low_complexity Low_complexity 1 21 0 183 304 51 13 chr13 60966269 60966348 -58778550 - L3 LINE CR1 -2 1575 1494 24 32 0 0 chr13 60966884 60966915 -58777983 + AT_rich Low_complexity Low_complexity 1 31 0 387 322 126 26 chr13 60967532 60967880 -58777018 + L1MEc LINE L1 23 405 -5991 1143 225 36 30 chr13 60968338 60968798 -58776100 + L1ME1 LINE L1 5328 5868 -298 312 301 59 22 chr13 60968989 60969125 -58775773 + L1MEc LINE L1 288 428 -5968 777 220 29 103 chr13 60969281 60969631 -58775267 + L1MEc LINE L1 1579 1902 -4494 766 214 61 61 chr13 60969643 60969872 -58775026 + LTR68 LTR ERV1 3 231 -509 2639 58 0 0 chr13 60969873 60970184 -58774714 + AluY SINE Alu 1 311 0 261 241 0 0 chr13 60970300 60970358 -58774540 + L1ME3 LINE L1 6104 6161 -1 2416 93 3 0 chr13 60970825 60971136 -58773762 - AluSp SINE Alu -1 312 1 231 328 115 0 chr13 60971847 60971969 -58772929 + L2 LINE L2 3137 3272 0 497 293 146 5 chr13 60972986 60973191 -58771707 + MIR SINE MIR 19 252 -10 1155 244 164 15 chr13 60974179 60974581 -58770317 - LTR16B LTR ERVL -1 463 2 207 340 125 20 chr13 60974672 60974872 -58770026 - MIR SINE MIR -10 252 32 16880 135 14 97 chr13 60974983 60978589 -58766309 + L1PA7 LINE L1 13 3321 -2825 13755 104 29 0 chr13 60979200 60981991 -58762907 + L1PA7 LINE L1 3320 6154 0 1462 146 42 2 chr13 60982755 60983187 -58761711 + L1MA7 LINE L1 5783 6291 0 21 36 0 0 chr13 60983745 60983773 -58761125 + AT_rich Low_complexity Low_complexity 1 28 0 225 297 238 22 chr13 60983896 60984081 -58760817 - L1MC4 LINE L1 -1038 7004 6780 823 281 114 32 chr13 60984955 60985119 -58759779 + Tigger8 DNA MER2_type 145 294 -372 2411 75 0 3 chr13 60985119 60985425 -58759473 + AluY SINE Alu 1 305 -6 823 281 114 32 chr13 60985425 60985691 -58759207 + Tigger8 DNA MER2_type 294 610 -56 195 316 0 0 chr13 60985773 60985830 -58759068 + L2 LINE L2 3216 3272 0 305 265 211 61 chr13 60986912 60987059 -58757839 - MIR3 SINE MIR -11 197 29 238 229 0 0 chr13 60987339 60987387 -58757511 - L2 LINE L2 -4 3268 3221 230 346 10 20 chr13 60988912 60989013 -58755885 + MIR SINE MIR 45 144 -64 217 281 146 11 chr13 60989173 60989262 -58755636 - MER5A DNA MER1_type -45 144 44 22 35 0 0 chr13 60990948 60990977 -58753921 + AT_rich Low_complexity Low_complexity 1 29 0 286 360 111 34 chr13 60991303 60991717 -58753181 + L2 LINE L2 1993 2438 -876 236 363 49 10 chr13 60992207 60992309 -58752589 + L2 LINE L2 3204 3309 -4 243 365 52 0 chr13 60992550 60992646 -58752252 - L2 LINE L2 -5 3267 3167 1162 212 20 115 chr13 60992651 60993052 -58751846 - MLT1A1 LTR MaLR 0 365 3 6633 223 94 26 chr13 60993061 60994668 -58750230 - MLT1A1-int LTR MaLR -7 1728 13 1034 175 65 120 chr13 60994670 60995055 -58749843 - MLT1A1 LTR MaLR -1 504 1 215 185 56 0 chr13 60995561 60995615 -58749283 + MIR3 SINE MIR 150 206 -2 1374 154 13 0 chr13 60995697 60995930 -58748968 - L1PA16 LINE L1 -9 6157 5922 205 241 35 46 chr13 60997768 60997855 -58747043 + L2 LINE L2 3182 3267 -46 632 289 77 52 chr13 60998320 60998796 -58746102 - L2 LINE L2 -109 3204 2731 1326 287 94 22 chr13 60999724 61000267 -58744631 - L3 LINE CR1 -265 1312 731 431 282 65 8 chr13 61000460 61000584 -58744314 - L2 LINE L2 0 3313 3183 799 240 98 54 chr13 61000681 61001087 -58743811 - MLT2B1 LTR ERVL -8 512 80 22 56 0 0 chr13 61002070 61002106 -58742792 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr13 61002157 61002191 -58742707 + AT_rich Low_complexity Low_complexity 1 34 0 1804 118 16 51 chr13 61002252 61002565 -58742333 - AluSx SINE Alu -10 302 1 207 365 76 21 chr13 61002990 61003135 -58741763 + MIR SINE MIR 56 208 -54 239 309 21 10 chr13 61003237 61003334 -58741564 + MIR SINE MIR 57 154 -108 1393 242 59 0 chr13 61003343 61003649 -58741249 + MLT2B1 LTR ERVL 3 326 -194 380 119 30 0 chr13 61003671 61003738 -58741160 + (TATG)n Simple_repeat Simple_repeat 2 70 0 183 80 0 0 chr13 61003738 61003763 -58741135 + (CA)n Simple_repeat Simple_repeat 2 26 0 379 56 0 19 chr13 61003765 61003819 -58741079 + MLT2B1 LTR ERVL 464 516 -4 285 360 65 34 chr13 61004095 61004340 -58740558 + L3 LINE CR1 888 1124 -453 701 220 44 0 chr13 61004340 61004499 -58740399 + FRAM SINE Alu 1 166 0 720 171 95 57 chr13 61004509 61004719 -58740179 - MER20 DNA MER1_type -1 218 1 285 360 65 34 chr13 61004719 61004784 -58740114 + L3 LINE CR1 1132 1219 -358 313 225 29 116 chr13 61005047 61005185 -58739713 + L3 LINE CR1 1257 1382 -195 1147 184 67 0 chr13 61005279 61005518 -58739380 - Tigger2 DNA MER2_type -1 2717 2463 3971 151 32 1 chr13 61005574 61006236 -58738662 - Tigger2 DNA MER2_type -1970 748 67 39 50 0 0 chr13 61006236 61006296 -58738602 + AT_rich Low_complexity Low_complexity 1 60 0 384 206 14 0 chr13 61006296 61006369 -58738529 - Tigger2 DNA MER2_type -2644 74 1 470 258 40 0 chr13 61006633 61006757 -58738141 - MIR SINE MIR -10 252 124 330 270 107 56 chr13 61007350 61007583 -58737315 + L3b LINE CR1 1203 1447 -136 28 29 0 0 chr13 61007691 61007726 -58737172 + AT_rich Low_complexity Low_complexity 1 35 0 1060 122 39 6 chr13 61007894 61008075 -58736823 + MER53 DNA DNA 1 187 -2 465 267 79 24 chr13 61008097 61008262 -58736636 + MER69A DNA AcHobo 4 177 0 321 182 0 0 chr13 61009020 61009075 -58735823 - L2 LINE L2 -4 3268 3214 488 60 0 71 chr13 61009139 61009223 -58735675 - L1PA4 LINE L1 0 6155 6078 617 172 38 0 chr13 61009324 61009481 -58735417 + GA-rich Low_complexity Low_complexity 1 163 0 540 183 41 15 chr13 61009506 61009760 -58735138 + GA-rich Low_complexity Low_complexity 1 260 0 461 229 11 28 chr13 61009735 61009914 -58734984 + A-rich Low_complexity Low_complexity 5 180 0 * 10506 65 15 39 chr13 61009935 61011603 -58733295 - L1M2 LINE L1 -666 5634 3987 7196 31 1 0 chr13 61011709 61012988 -58731910 - L1PA4 LINE L1 -54 6101 4822 5871 30 0 0 chr13 61012986 61013710 -58731188 - L1PA4 LINE L1 -2952 3194 2471 * 417 319 43 43 chr13 61014704 61014911 -58729987 - MIR SINE MIR -17 245 39 1729 156 36 53 chr13 61018326 61018684 -58726214 - MER21B LTR ERV1 -1 862 511 2385 209 121 23 chr13 61018690 61019350 -58725548 + MER50 LTR ERV1 10 734 0 * 2875 185 52 0 chr13 61019350 61019839 -58725059 - MER21B LTR ERV1 -348 515 1 27 0 0 0 chr13 61019917 61019944 -58724954 + AT_rich Low_complexity Low_complexity 1 27 0 304 313 115 33 chr13 61019990 61020172 -58724726 + MIR SINE MIR 60 256 -6 2204 150 57 27 chr13 61020797 61021203 -58723695 + MSTB LTR MaLR 1 418 -8 462 167 33 11 chr13 61021221 61021311 -58723587 + MSTA LTR MaLR 332 423 -5 1078 302 112 48 chr13 61022683 61023441 -58721457 - L2 LINE L2 -9 3304 2463 189 74 0 0 chr13 61023441 61023468 -58721430 + (TG)n Simple_repeat Simple_repeat 2 28 0 1078 302 112 48 chr13 61023468 61023794 -58721104 - L2 LINE L2 -850 2463 2159 192 125 0 0 chr13 61023807 61023839 -58721059 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr13 61023881 61023903 -58720995 + AT_rich Low_complexity Low_complexity 1 22 0 2237 177 22 29 chr13 61023912 61024365 -58720533 - L1PB4 LINE L1 0 6156 5707 229 313 45 62 chr13 61024366 61024545 -58720353 - L2 LINE L2 -1192 2122 1947 1564 136 8 8 chr13 61024564 61024829 -58720069 - L1M1 LINE L1 -647 5653 5389 1035 215 64 43 chr13 61025186 61025612 -58719286 - HsTC2 DNA Tc2 -2 1896 1271 951 253 30 0 chr13 61025608 61025845 -58719053 - HsTC2 DNA Tc2 -1153 745 502 * 661 228 119 26 chr13 61025841 61026034 -58718864 - HsTC2 DNA Tc2 -1686 212 2 * 25 31 0 0 chr13 61026175 61026207 -58718691 + AT_rich Low_complexity Low_complexity 1 32 0 265 253 58 11 chr13 61026209 61026296 -58718602 + MLT1J LTR MaLR 82 172 -339 234 337 54 0 chr13 61026393 61026485 -58718413 + MLT1L LTR MaLR 348 444 -171 773 177 30 101 chr13 61026515 61026607 -58718291 + AluSg SINE Alu 49 121 -189 240 35 0 0 chr13 61026607 61026636 -58718262 + (TA)n Simple_repeat Simple_repeat 2 30 0 773 177 30 101 chr13 61026636 61026741 -58718157 + AluSg SINE Alu 121 232 -78 376 216 72 0 chr13 61026768 61026865 -58718033 + MLT1J LTR MaLR 389 492 -19 471 184 18 44 chr13 61027311 61027425 -58717473 + MSTD LTR MaLR 1 111 -285 * 744 183 5 45 chr13 61027401 61027559 -58717339 + MSTD LTR MaLR 261 396 0 39 22 0 0 chr13 61028257 61028303 -58716595 + AT_rich Low_complexity Low_complexity 1 46 0 279 79 0 0 chr13 61028764 61028802 -58716096 + (TC)n Simple_repeat Simple_repeat 1 38 0 2217 102 3 0 chr13 61028818 61029112 -58715786 + AluSq SINE Alu 1 295 -18 1215 209 106 14 chr13 61030306 61030722 -58714176 - Charlie2 DNA MER1_type -122 2740 2287 27 29 0 0 chr13 61030725 61030759 -58714139 + AT_rich Low_complexity Low_complexity 1 34 0 253 177 129 0 chr13 61030773 61030835 -58714063 - Charlie2 DNA MER1_type -685 2177 2108 603 235 37 32 chr13 61030865 61031052 -58713846 - Charlie2 DNA MER1_type -818 2044 1857 469 282 97 60 chr13 61031071 61031319 -58713579 - Charlie2 DNA MER1_type -2480 302 46 513 236 286 0 chr13 61031654 61031895 -58713003 - L1MC4 LINE L1 -761 7281 6972 1053 265 103 27 chr13 61032013 61032459 -58712439 + HAL1b LINE L1 62 541 -807 1620 235 136 20 chr13 61032574 61033208 -58711690 + L1MC4a LINE L1 5268 5974 -1834 21 57 0 0 chr13 61034555 61034590 -58710308 + AT_rich Low_complexity Low_complexity 1 35 0 1683 184 86 0 chr13 61034762 61035098 -58709800 + MLT1A1 LTR MaLR 1 365 0 1751 228 68 51 chr13 61035625 61035788 -58709110 + MLT2B3 LTR ERVL 1 160 -394 207 0 0 0 chr13 61035788 61035811 -58709087 + (CTAGGG)n Simple_repeat Simple_repeat 3 25 0 1751 228 68 51 chr13 61035811 61036192 -58708706 + MLT2B3 LTR ERVL 160 554 0 255 254 14 14 chr13 61036771 61036842 -58708056 + MIR SINE MIR 25 95 -167 8616 163 27 11 chr13 61037756 61037913 -58706985 - L1MA6 LINE L1 -5 6295 6142 2571 108 16 8 chr13 61037913 61038285 -58706613 + THE1C LTR MaLR 1 375 0 8616 163 27 11 chr13 61038285 61040731 -58704167 - L1MA6 LINE L1 -158 6142 3646 2176 110 0 0 chr13 61041505 61041817 -58703081 - AluSq SINE Alu 0 312 1 228 253 0 0 chr13 61042081 61042156 -58702742 + CT-rich Low_complexity Low_complexity 2 76 0 2327 237 19 10 chr13 61042407 61043032 -58701866 + L1M4 LINE L1 3889 4519 -1627 493 255 32 10 chr13 61043033 61043211 -58701687 + L1MA10 LINE L1 5976 6319 -9 391 320 65 30 chr13 61043237 61043437 -58701461 + MER110 LTR ERV1 273 479 -12 528 261 28 33 chr13 61043461 61043641 -58701257 - MER58A DNA MER1_type -9 215 37 323 278 43 53 chr13 61043802 61043989 -58700909 - L1M4 LINE L1 -1100 5046 4862 1243 126 25 46 chr13 61044002 61044240 -58700658 + MER50 LTR ERV1 1 233 -501 * 1521 147 49 28 chr13 61044229 61044515 -58700383 + MER50 LTR ERV1 433 724 -10 326 273 93 44 chr13 61044701 61045025 -58699873 - L1M4 LINE L1 -1746 4400 4050 300 270 14 0 chr13 61045091 61045165 -58699733 + L1MC4 LINE L1 6649 6723 -1319 258 326 60 46 chr13 61045526 61046139 -58698759 - L1M4 LINE L1 -1922 4224 3603 21 0 0 0 chr13 61046206 61046227 -58698671 + AT_rich Low_complexity Low_complexity 1 21 0 42 36 0 0 chr13 61046789 61046845 -58698053 + AT_rich Low_complexity Low_complexity 1 56 0 6208 148 28 8 chr13 61047822 61049064 -58695834 + THE1C-int LTR MaLR 69 1353 -227 362 125 0 16 chr13 61049054 61049118 -58695780 + THE1C-int LTR MaLR 1517 1579 -1 * 2210 107 37 45 chr13 61049118 61049492 -58695406 + THE1C LTR MaLR 5 375 0 324 0 0 0 chr13 61049493 61049529 -58695369 + (TC)n Simple_repeat Simple_repeat 2 37 0 * 345 47 0 0 chr13 61049528 61049571 -58695327 + (TA)n Simple_repeat Simple_repeat 1 43 0 565 199 146 33 chr13 61050574 61050725 -58694173 + MER67D LTR ERV1 1 168 -346 * 1432 164 16 8 chr13 61050700 61050956 -58693942 - Tigger2 DNA MER2_type -10 2708 2451 4157 149 45 8 chr13 61051022 61051740 -58693158 - Tigger2 DNA MER2_type -1974 744 1 778 184 56 93 chr13 61051742 61052159 -58692739 + MER67D LTR ERV1 144 510 -4 492 250 47 66 chr13 61052228 61052570 -58692328 - LTR35 LTR ERV1 0 677 350 216 244 0 0 chr13 61052928 61052969 -58691929 - L2 LINE L2 -212 3060 3020 883 310 0 16 chr13 61053089 61053331 -58691567 - MIR SINE MIR -9 253 16 22 35 0 0 chr13 61053566 61053595 -58691303 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr13 61054255 61054289 -58690609 + (TG)n Simple_repeat Simple_repeat 2 35 0 376 261 81 0 chr13 61054342 61054453 -58690445 + MER5B DNA MER1_type 1 120 -58 753 226 0 0 chr13 61054729 61054906 -58689992 + (TA)n Simple_repeat Simple_repeat 1 177 0 317 322 0 0 chr13 61054926 61055016 -58689882 - L1MC4 LINE L1 -1339 6703 6614 316 296 23 0 chr13 61054946 61055034 -58689864 + L1MC4 LINE L1 6614 6703 -1339 * 305 333 0 0 chr13 61055034 61055124 -58689774 + L1MC4 LINE L1 6614 6703 -1339 304 296 23 0 chr13 61055048 61055136 -58689762 - L1MC4 LINE L1 -1339 6703 6614 * 318 322 0 0 chr13 61055138 61055228 -58689670 - L1MC4 LINE L1 -1339 6703 6614 308 277 0 43 chr13 61055158 61055252 -58689646 + L1MC4 LINE L1 6614 6703 -1339 * 641 242 0 11 chr13 61055275 61055457 -58689441 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 186 255 0 0 chr13 61055465 61055516 -58689382 + (TA)n Simple_repeat Simple_repeat 1 51 0 * 591 272 0 0 chr13 61055509 61055689 -58689209 + (TG)n Simple_repeat Simple_repeat 1 180 0 636 208 35 0 chr13 61055717 61055890 -58689008 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2319 156 12 0 chr13 61055892 61056303 -58688595 + L1MA5A LINE L1 5876 6291 -6 1503 245 32 22 chr13 61056531 61057152 -58687746 + L1M4 LINE L1 2734 3360 -2786 342 145 32 0 chr13 61057153 61057215 -58687683 + L1MB8 LINE L1 5423 5486 -694 24 0 0 0 chr13 61057361 61057385 -58687513 + AT_rich Low_complexity Low_complexity 1 24 0 2743 188 36 17 chr13 61057387 61057613 -58687285 + L1MB8 LINE L1 5520 5740 -438 2168 119 36 30 chr13 61057613 61057975 -58686923 - THE1B LTR MaLR 0 364 1 10635 107 34 0 chr13 61057975 61059503 -58685395 - THE1B-int LTR MaLR 0 1580 1 1879 160 36 30 chr13 61059503 61059865 -58685033 - THE1B LTR MaLR 0 364 1 2743 188 36 17 chr13 61059865 61060270 -58684628 + L1MB8 LINE L1 5739 6165 -13 27 0 0 0 chr13 61060343 61060370 -58684528 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr13 61061237 61061276 -58683622 + AT_rich Low_complexity Low_complexity 1 39 0 492 357 18 22 chr13 61061401 61061625 -58683273 - MIR SINE MIR -22 240 18 219 388 66 44 chr13 61061627 61061854 -58683044 + L2 LINE L2 2868 3099 -173 2762 13 0 6 chr13 61064363 61064678 -58680220 - AluYb8 SINE Alu -5 313 1 565 306 94 0 chr13 61065623 61065803 -58679095 + MIR SINE MIR 53 249 -13 6735 178 43 16 chr13 61065807 61066869 -58678029 - L1M3 LINE L1 -735 5433 4313 1478 212 7 7 chr13 61066869 61067157 -58677741 + AluJb SINE Alu 7 294 -18 6735 178 43 16 chr13 61067157 61067573 -58677325 - L1M3 LINE L1 -1855 4313 3910 647 305 50 11 chr13 61068728 61068992 -58675906 + MER110A LTR ERV1 213 470 -12 24 0 0 0 chr13 61069525 61069549 -58675349 + AT_rich Low_complexity Low_complexity 1 24 0 243 363 106 12 chr13 61069922 61070082 -58674816 + L2 LINE L2 3094 3268 -4 3091 140 38 25 chr13 61071465 61072101 -58672797 - L1MA8 LINE L1 0 6291 5648 2086 82 24 5 chr13 61072106 61072456 -58672442 - MLT2A1 LTR ERVL -7 437 1 387 127 0 0 chr13 61072456 61072519 -58672379 + (TA)n Simple_repeat Simple_repeat 2 64 0 1470 157 46 130 chr13 61072619 61073126 -58671772 - L1MA8 LINE L1 -690 5622 5138 450 85 24 12 chr13 61073126 61073208 -58671690 + (TA)n Simple_repeat Simple_repeat 2 84 0 206 307 147 20 chr13 61074064 61074214 -58670684 + MIR SINE MIR 79 247 -15 21 36 0 0 chr13 61074406 61074434 -58670464 + AT_rich Low_complexity Low_complexity 1 28 0 906 123 23 41 chr13 61074434 61074605 -58670293 - L1MA3 LINE L1 -6 7718 7551 21136 162 105 16 chr13 61074608 61076356 -58668542 - L1MA3 LINE L1 -249 7475 5884 2185 102 7 0 chr13 61076356 61076651 -58668247 - AluY SINE Alu -10 301 5 21136 162 105 16 chr13 61076651 61078255 -58666643 - L1MA3 LINE L1 -1840 5884 4424 2001 115 0 11 chr13 61078255 61078571 -58666327 - AluSq SINE Alu 0 313 1 21136 162 105 16 chr13 61078571 61081955 -58662943 - L1MA3 LINE L1 -3300 4424 95 456 19 0 0 chr13 61081955 61082008 -58662890 + (TG)n Simple_repeat Simple_repeat 2 54 0 21136 162 105 16 chr13 61082008 61082098 -58662800 - L1MA3 LINE L1 -7629 95 14 198 103 0 0 chr13 61082893 61082922 -58661976 + (CA)n Simple_repeat Simple_repeat 2 30 0 1758 188 11 39 chr13 61082986 61083347 -58661551 + MSTB LTR MaLR 1 351 -75 4669 196 19 27 chr13 61083409 61084377 -58660521 + MSTB-int LTR MaLR 1 960 -691 1840 143 92 15 chr13 61084378 61084714 -58660184 + THE1B LTR MaLR 1 362 -2 11095 97 23 5 chr13 61084716 61086268 -58658630 + THE1B-int LTR MaLR 1 1580 0 1967 157 76 15 chr13 61086268 61086611 -58658287 + THE1B LTR MaLR 1 364 0 3303 176 19 77 chr13 61086611 61087349 -58657549 + MSTB-int LTR MaLR 957 1651 0 2195 199 17 15 chr13 61087352 61087759 -58657139 + MSTB LTR MaLR 4 411 -15 183 100 0 0 chr13 61088994 61089024 -58655874 + (TG)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr13 61089342 61089366 -58655532 + AT_rich Low_complexity Low_complexity 1 24 0 1446 240 83 14 chr13 61089809 61090230 -58654668 - LTR40b LTR ERVL 0 462 13 406 352 158 26 chr13 61090357 61091644 -58653254 + L2 LINE L2 1799 3257 -15 273 57 0 0 chr13 61091645 61091680 -58653218 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 231 140 0 80 chr13 61091886 61091936 -58652962 + L2 LINE L2 3227 3272 0 190 54 27 27 chr13 61092448 61092485 -58652413 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 200 35 35 0 chr13 61092972 61093001 -58651897 + (TC)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr13 61093001 61093024 -58651874 + AT_rich Low_complexity Low_complexity 1 23 0 769 203 94 0 chr13 61093828 61094020 -58650878 + L1MB1 LINE L1 5954 6163 -5 528 340 36 12 chr13 61094202 61094455 -58650443 - L2 LINE L2 -1272 2042 1784 1759 161 20 10 chr13 61094997 61095289 -58649609 - AluJo SINE Alu -17 295 1 416 299 7 7 chr13 61095811 61095948 -58648950 + MER69 DNA AcHobo 11 147 -2379 357 287 70 21 chr13 61096450 61096593 -58648305 - L2 LINE L2 -2 3311 3162 317 399 10 10 chr13 61096613 61096811 -58648087 - L2 LINE L2 -471 2843 2646 800 204 25 0 chr13 61097349 61097506 -58647392 - MER6B DNA MER2_type -49 161 1 4125 194 27 14 chr13 61097571 61098970 -58645928 + L1M2 LINE L1 4399 5817 -495 9206 93 4 10 chr13 61099070 61100402 -58644496 + HERVH LTR ERV1 2670 3993 -3720 4335 141 8 1 chr13 61100404 61101062 -58643836 + HERVH LTR ERV1 4488 5149 -2564 1368 122 33 0 chr13 61101063 61101276 -58643622 + HERVH LTR ERV1 5600 5819 -1894 2339 103 45 16 chr13 61101276 61101655 -58643243 + HERVH LTR ERV1 7324 7713 0 2739 73 98 5 chr13 61101655 61102065 -58642833 + LTR7 LTR ERV1 1 448 -2 437 189 111 0 chr13 61102067 61102157 -58642741 + Tigger2 DNA MER2_type 2619 2718 0 292 281 138 31 chr13 61102157 61102317 -58642581 - MIR SINE MIR -30 232 56 569 214 135 26 chr13 61102366 61102558 -58642340 - MLT2C1 LTR ERVL -166 231 19 2520 120 17 15 chr13 61102558 61102965 -58641933 + LTR49 LTR ERV1 184 591 -4 415 205 8 31 chr13 61103256 61103383 -58641515 + L1MA9 LINE L1 6164 6287 -25 1426 209 3 19 chr13 61103396 61103757 -58641141 + AluJb SINE Alu 1 312 0 226 233 95 9 chr13 61103758 61103874 -58641024 + L1M LINE L1 5302 5427 -873 817 232 6 6 chr13 61104082 61104250 -58640648 + MER97a DNA MER1_type? 11 178 -716 195 129 0 0 chr13 61104673 61104704 -58640194 + (CA)n Simple_repeat Simple_repeat 2 32 0 646 198 28 51 chr13 61104717 61104894 -58640004 + MER5B DNA MER1_type 2 174 -4 408 148 12 12 chr13 61104917 61104998 -58639900 + MER5A DNA MER1_type 13 93 -96 326 305 68 0 chr13 61106030 61106148 -58638750 - MIR SINE MIR -69 193 68 21 0 0 0 chr13 61106573 61106594 -58638304 + AT_rich Low_complexity Low_complexity 1 21 0 654 261 94 50 chr13 61107586 61107988 -58636910 + MLT1G LTR MaLR 24 446 -144 323 283 35 55 chr13 61107989 61108134 -58636764 + MLT1G LTR MaLR 380 521 -69 2018 205 66 45 chr13 61108134 61108666 -58636232 + LTR55 LTR ERV 1 543 -5 264 224 0 0 chr13 61108669 61108727 -58636171 + MLT1G LTR MaLR 517 574 -16 998 112 0 0 chr13 61109587 61109721 -58635177 - AluSc SINE Alu -11 298 165 316 243 14 0 chr13 61109910 61109984 -58634914 - MIR SINE MIR -120 142 68 2587 52 0 0 chr13 61110176 61110481 -58634417 - AluY SINE Alu -6 305 1 1876 119 3 99 chr13 61110767 61111110 -58633788 - AluSx SINE Alu -2 310 1 210 71 0 0 chr13 61111269 61111297 -58633601 + (CA)n Simple_repeat Simple_repeat 1 28 0 2168 118 0 7 chr13 61111555 61111851 -58633047 + AluSx SINE Alu 1 294 -18 2493 148 14 23 chr13 61112051 61112489 -58632409 - Tigger2a DNA MER2_type 0 434 1 361 379 40 0 chr13 61112697 61112874 -58632024 - MIR SINE MIR -74 188 5 346 333 149 0 chr13 61113757 61113898 -58631000 - L2 LINE L2 -3 3269 3108 2310 193 19 24 chr13 61114556 61115022 -58629876 - MER88 LTR ERVL 0 464 1 199 316 92 40 chr13 61115418 61115494 -58629404 - L2 LINE L2 -54 3218 3139 550 300 78 89 chr13 61115903 61116451 -58628447 + L1ME4a LINE L1 5313 5853 -268 2200 36 44 11 chr13 61116455 61116765 -58628133 + AluY SINE Alu 1 319 0 22 56 0 0 chr13 61117397 61117433 -58627465 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr13 61117723 61117748 -58627150 + AT_rich Low_complexity Low_complexity 1 25 0 678 268 50 50 chr13 61118088 61118327 -58626571 + MIR SINE MIR 24 262 0 826 281 164 19 chr13 61119024 61119077 -58625821 - L2 LINE L2 -1101 2213 2169 2489 50 3 0 chr13 61119077 61119380 -58625518 + AluY SINE Alu 1 304 -7 826 281 164 19 chr13 61119380 61119849 -58625049 - L2 LINE L2 -1145 2169 1615 21 0 0 0 chr13 61121077 61121098 -58623800 + AT_rich Low_complexity Low_complexity 1 21 0 195 162 0 0 chr13 61121977 61122014 -58622884 + (CA)n Simple_repeat Simple_repeat 1 37 0 250 218 327 45 chr13 61123226 61123336 -58621562 + MER5A DNA MER1_type 49 189 0 1379 324 74 33 chr13 61123506 61124496 -58620402 + L2 LINE L2 1959 2986 -327 410 201 0 21 chr13 61124496 61124640 -58620258 + (CA)n Simple_repeat Simple_repeat 1 141 0 3020 176 23 32 chr13 61124803 61125468 -58619430 - L1PB4 LINE L1 -1411 4735 4077 4261 183 54 5 chr13 61125470 61125996 -58618902 + L1PB4 LINE L1 4764 5263 -893 273 119 0 0 chr13 61125996 61126038 -58618860 + (CAA)n Simple_repeat Simple_repeat 1 42 0 4261 183 54 5 chr13 61126038 61126842 -58618056 + L1PB4 LINE L1 5263 6148 -8 356 339 8 0 chr13 61127047 61127165 -58617733 - L1 LINE L1 -2160 3986 3868 233 278 0 0 chr13 61127302 61127356 -58617542 + (CTA)n Simple_repeat Simple_repeat 2 55 0 710 335 60 21 chr13 61127506 61128026 -58616872 - L1 LINE L1 -2663 3483 2944 2676 109 3 3 chr13 61128264 61128639 -58616259 + THE1C LTR MaLR 1 375 0 1684 176 134 29 chr13 61129647 61130056 -58614842 + LTR10A LTR ERV1 97 548 -61 1114 311 114 34 chr13 61130140 61131149 -58613749 - L1M4 LINE L1 -2406 3740 2651 1613 201 57 35 chr13 61131705 61132123 -58612775 - MER39 LTR ERV1 -8 699 67 31 68 0 0 chr13 61133900 61133959 -58610939 + AT_rich Low_complexity Low_complexity 1 59 0 257 214 12 60 chr13 61133975 61134059 -58610839 - MER116 DNA Mariner 0 80 1 25 51 0 0 chr13 61134297 61134336 -58610562 + AT_rich Low_complexity Low_complexity 1 39 0 189 339 0 18 chr13 61134645 61134701 -58610197 - L3b LINE CR1 -7 1576 1522 483 314 74 0 chr13 61134817 61134992 -58609906 - L2 LINE L2 -731 2583 2396 201 282 0 28 chr13 61135886 61135957 -58608941 + A-rich Low_complexity Low_complexity 3 71 0 214 214 18 0 chr13 61137182 61137238 -58607660 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 0 0 0 chr13 61138618 61138640 -58606258 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 60 chr13 61138665 61138715 -58606183 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 227 349 128 0 chr13 61140041 61140127 -58604771 - MIR SINE MIR -63 145 49 277 284 73 28 chr13 61140225 61140334 -58604564 + L2 LINE L2 3158 3271 -1 812 177 35 54 chr13 61140405 61140608 -58604290 + L1ME1 LINE L1 5581 5779 -385 488 213 15 11 chr13 61140616 61140747 -58604151 + L1ME1 LINE L1 6045 6183 -1 3599 175 20 23 chr13 61142130 61142837 -58602061 + MER39 LTR ERV1 3 707 0 213 128 0 26 chr13 61143642 61143681 -58601217 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 3072 159 113 50 chr13 61144682 61145080 -58599818 + MER39 LTR ERV1 1 372 -335 1987 115 68 74 chr13 61145080 61145406 -58599492 + THE1B LTR MaLR 1 326 -38 2102 125 3 0 chr13 61145406 61145717 -58599181 - AluSx SINE Alu 0 312 1 1987 115 68 74 chr13 61145717 61145756 -58599142 + THE1B LTR MaLR 326 364 0 11290 105 3 3 chr13 61145756 61147336 -58597562 + THE1B-int LTR MaLR 1 1580 0 1831 152 84 26 chr13 61147336 61147679 -58597219 + THE1B LTR MaLR 1 363 -1 3072 159 113 50 chr13 61147679 61147943 -58596955 + MER39 LTR ERV1 371 707 0 22 35 0 0 chr13 61148768 61148797 -58596101 + AT_rich Low_complexity Low_complexity 1 29 0 1181 226 91 36 chr13 61149218 61149713 -58595185 - MER69 DNA AcHobo 0 2526 2005 * 1524 226 174 18 chr13 61149702 61150197 -58594701 - MER69 DNA AcHobo -1954 572 1 1815 148 0 40 chr13 61150234 61150532 -58594366 + AluSx SINE Alu 1 286 -26 321 341 73 16 chr13 61151561 61151684 -58593214 + L2 LINE L2 3141 3270 -2 222 163 41 0 chr13 61152780 61152829 -58592069 + (CTTTA)n Simple_repeat Simple_repeat 3 53 0 1324 246 7 7 chr13 61152862 61153151 -58591747 + AluJo SINE Alu 1 289 -23 544 314 62 16 chr13 61153583 61153777 -58591121 + MIR SINE MIR 46 248 -14 26 30 0 0 chr13 61153786 61153819 -58591079 + AT_rich Low_complexity Low_complexity 1 33 0 548 343 133 31 chr13 61154126 61154697 -58590201 + L2 LINE L2 2092 2720 -594 2476 193 50 31 chr13 61154758 61155263 -58589635 + MLT2B3 LTR ERVL 1 518 -36 441 55 41 0 chr13 61155263 61155336 -58589562 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2476 193 50 31 chr13 61155336 61155374 -58589524 + MLT2B3 LTR ERVL 518 554 0 757 332 24 27 chr13 61155380 61155711 -58589187 - MER115 DNA AcHobo -271 422 93 184 250 0 0 chr13 61155859 61155899 -58588999 + L2 LINE L2 3210 3249 -23 2191 103 0 31 chr13 61156041 61156360 -58588538 - AluSx SINE Alu -3 309 1 217 323 50 20 chr13 61156385 61156484 -58588414 + L2 LINE L2 2955 3056 -216 4997 168 37 31 chr13 61158104 61159085 -58585813 + L1MB2 LINE L1 31 1017 -5367 1137 165 52 13 chr13 61159086 61159316 -58585582 + MER41B LTR ERV1 397 635 0 2687 121 22 5 chr13 61159316 61159731 -58585167 + MER41B-int LTR ERV1 1 422 -5524 2880 214 94 44 chr13 61159748 61160590 -58584308 + MER52A LTR ERV1 125 1008 -747 1258 176 17 21 chr13 61160590 61160828 -58584070 + MER41B-int LTR ERV1 2394 2630 -4907 * 4896 125 73 25 chr13 61160819 61161686 -58583212 + MER41B-int LTR ERV1 2777 3684 -3853 * 11818 107 21 29 chr13 61161685 61163624 -58581274 + MER41B-int LTR ERV1 2941 4893 -1053 2368 91 10 0 chr13 61163624 61163931 -58580967 - AluY SINE Alu -1 310 1 11818 107 21 29 chr13 61163931 61164028 -58580870 + MER41B-int LTR ERV1 4893 4989 -957 1824 165 3 52 chr13 61164028 61164355 -58580543 - AluSx SINE Alu -1 311 1 11818 107 21 29 chr13 61164355 61164531 -58580367 + MER41B-int LTR ERV1 4989 5944 -2 3222 112 14 73 chr13 61164531 61165092 -58579806 + MER41B LTR ERV1 1 528 -107 911 281 28 29 chr13 61165337 61165748 -58579150 + MLT1G1 LTR MaLR 87 524 -31 3280 78 11 0 chr13 61166177 61166612 -58578286 - L1PA7 LINE L1 -30 6124 5685 8046 198 58 83 chr13 61166614 61170506 -58574392 + L1MB2 LINE L1 2202 5975 -432 1921 149 14 65 chr13 61170506 61170861 -58574037 + MER1B DNA MER1_type 1 337 0 8046 198 58 83 chr13 61170861 61171284 -58573614 + L1MB2 LINE L1 5975 6407 0 2624 99 3 0 chr13 61171318 61171672 -58573226 - THE1A LTR MaLR 0 355 1 11255 96 10 2 chr13 61171672 61173241 -58571657 - THE1A-int LTR MaLR 0 1580 1 2470 108 8 8 chr13 61173243 61173595 -58571303 - THE1A LTR MaLR -2 353 2 1490 199 14 7 chr13 61173595 61173872 -58571026 - AluJb SINE Alu -33 279 1 378 0 0 0 chr13 61174046 61174088 -58570810 + (TA)n Simple_repeat Simple_repeat 2 43 0 475 333 15 0 chr13 61174268 61174400 -58570498 - MIR3 SINE MIR -15 193 60 180 175 175 0 chr13 61174457 61174497 -58570401 - MIR SINE MIR -33 229 183 580 319 103 0 chr13 61174513 61174698 -58570200 - MIR SINE MIR -58 204 1 22 0 0 0 chr13 61174978 61175000 -58569898 + AT_rich Low_complexity Low_complexity 1 22 0 2052 196 61 12 chr13 61175699 61176128 -58568770 - MER74C LTR ERVL 0 460 11 319 339 79 23 chr13 61176194 61176371 -58568527 - MLT1J2 LTR MaLR -62 388 202 253 191 36 83 chr13 61176405 61176489 -58568409 - MLT1J2 LTR MaLR -304 146 67 242 260 10 0 chr13 61176590 61176690 -58568208 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 1103 277 17 8 chr13 61176968 61177279 -58567619 - L1ME3A LINE L1 -289 5881 5572 25 31 0 0 chr13 61178089 61178121 -58566777 + AT_rich Low_complexity Low_complexity 1 32 0 1274 205 66 15 chr13 61178121 61178394 -58566504 - AluJo SINE Alu -25 287 1 317 271 117 8 chr13 61180268 61180398 -58564500 - MIR SINE MIR -69 139 44 194 188 0 21 chr13 61180408 61180456 -58564442 + (CA)n Simple_repeat Simple_repeat 2 48 0 262 340 37 27 chr13 61181360 61181548 -58563350 - L2 LINE L2 0 3313 3124 236 224 35 59 chr13 61182605 61182690 -58562208 - MLT1J LTR MaLR 0 511 429 303 200 73 82 chr13 61182743 61182853 -58562045 - MLT1J LTR MaLR -172 339 231 219 186 0 0 chr13 61184533 61184576 -58560322 + A-rich Low_complexity Low_complexity 1 43 0 181 242 30 76 chr13 61185024 61185090 -58559808 - L2 LINE L2 -1862 1452 1390 385 314 25 0 chr13 61185116 61185237 -58559661 + L2 LINE L2 3190 3313 0 1748 88 20 0 chr13 61185604 61185853 -58559045 - L1PA13 LINE L1 -4 6159 5906 2221 86 7 0 chr13 61185853 61186156 -58558742 + L1PA13 LINE L1 5599 5903 -265 307 310 74 60 chr13 61186220 61186584 -58558314 - L1M4 LINE L1 -1321 4825 4457 513 281 77 94 chr13 61186614 61186844 -58558054 - L1MEd LINE L1 -5084 1035 802 198 59 59 0 chr13 61186844 61186878 -58558020 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1866 147 18 4 chr13 61186878 61187157 -58557741 - AluSx SINE Alu -1 316 1 513 281 77 94 chr13 61187157 61187657 -58557241 - L1MEd LINE L1 -5315 804 317 272 327 33 7 chr13 61187760 61187913 -58556985 - L1MEd LINE L1 -5960 159 3 185 268 0 0 chr13 61187985 61188026 -58556872 - MIR SINE MIR -8 254 214 203 226 0 16 chr13 61188647 61188709 -58556189 + (TA)n Simple_repeat Simple_repeat 2 62 0 2624 106 3 11 chr13 61189419 61189786 -58555112 + THE1B LTR MaLR 1 364 0 247 313 93 0 chr13 61190032 61190182 -58554716 - MER117 DNA MER1_type -33 164 1 181 244 0 0 chr13 61190201 61190242 -58554656 - L2 LINE L2 -299 2973 2933 235 327 20 46 chr13 61190488 61190641 -58554257 + LTR67 LTR ERVL 9 157 -400 300 309 139 39 chr13 61190698 61190957 -58553941 + LTR67 LTR ERVL 251 535 -22 335 211 11 22 chr13 61191087 61191177 -58553721 - MER67D LTR ERV1 -120 394 306 248 125 62 21 chr13 61191223 61191271 -58553627 - MER67D LTR ERV1 -230 313 264 7907 185 51 13 chr13 61191279 61192880 -58552018 + MER52A LTR ERV1 1 1755 0 1027 153 77 70 chr13 61192880 61193135 -58551763 - MER67D LTR ERV1 -284 259 1 24 53 0 0 chr13 61193660 61193698 -58551200 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 61193862 61193884 -58551014 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 61195084 61195112 -58549786 + AT_rich Low_complexity Low_complexity 1 28 0 206 121 0 0 chr13 61195147 61195180 -58549718 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 80 0 0 chr13 61196221 61196271 -58548627 + AT_rich Low_complexity Low_complexity 1 50 0 1416 152 158 13 chr13 61196279 61196582 -58548316 - MSTA LTR MaLR -81 347 1 1108 304 93 42 chr13 61196585 61197445 -58547453 + L1MEc LINE L1 71 974 -5422 1746 275 107 18 chr13 61197446 61198384 -58546514 + L1MEc LINE L1 1014 2127 -4088 1486 191 0 53 chr13 61198384 61198704 -58546194 + AluJo SINE Alu 1 303 -9 1746 275 107 18 chr13 61198704 61199323 -58545575 + L1MEc LINE L1 2127 2690 -3525 375 300 61 0 chr13 61199337 61199584 -58545314 + L1MEc LINE L1 2938 3199 -3016 227 250 15 29 chr13 61199756 61199824 -58545074 + L2 LINE L2 3202 3268 -4 578 129 10 0 chr13 61201711 61201801 -58543097 + (TAGA)n Simple_repeat Simple_repeat 1 94 -8 2104 136 3 0 chr13 61201801 61202096 -58542802 - AluSg SINE Alu -14 296 1 578 129 10 0 chr13 61202096 61202106 -58542792 + (TAGA)n Simple_repeat Simple_repeat 94 102 0 222 205 0 0 chr13 61204787 61204826 -58540072 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 527 308 76 30 chr13 61204950 61205214 -58539684 - L2 LINE L2 -280 3033 2761 276 359 12 41 chr13 61205438 61205608 -58539290 + L2 LINE L2 2152 2316 -998 193 375 34 34 chr13 61205737 61205825 -58539073 + L2 LINE L2 3168 3255 -58 22 0 0 0 chr13 61206167 61206189 -58538709 + AT_rich Low_complexity Low_complexity 1 22 0 1141 157 64 15 chr13 61206222 61206426 -58538472 - AluJb SINE Alu -11 301 88 2275 131 100 3 chr13 61206711 61207101 -58537797 + MSTA LTR MaLR 1 428 0 9675 163 19 3 chr13 61207110 61208727 -58536171 + MSTA-int LTR MaLR 9 1651 0 2185 125 120 3 chr13 61208727 61209110 -58535788 + MSTA LTR MaLR 1 428 0 2000 218 69 24 chr13 61210129 61210621 -58534277 + MER67D LTR ERV1 1 514 0 275 296 25 0 chr13 61210634 61210715 -58534183 - MIR SINE MIR -21 241 159 5378 152 21 15 chr13 61210717 61211608 -58533290 + MER4D LTR ERV1 1 897 -6 215 420 109 24 chr13 61211797 61212126 -58532772 - L2 LINE L2 0 3272 2916 262 312 145 45 chr13 61212169 61212570 -58532328 - L2 LINE L2 -442 2872 2432 220 218 18 0 chr13 61213083 61213138 -58531760 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 32 26 0 0 chr13 61214283 61214322 -58530576 + AT_rich Low_complexity Low_complexity 1 39 0 793 188 67 54 chr13 61215145 61215369 -58529529 + L1MC2 LINE L1 6110 6336 -8 241 300 30 30 chr13 61215445 61215545 -58529353 - MER101 LTR ERV1 -29 445 346 2085 154 103 8 chr13 61215554 61215943 -58528955 - MSTA LTR MaLR -2 426 1 520 279 105 43 chr13 61216007 61216283 -58528615 - MER101B LTR ERV1 -277 293 1 1135 184 165 48 chr13 61217341 61217699 -58527199 - MER31B LTR ERV1 -55 411 12 3030 136 109 20 chr13 61217792 61218390 -58526508 + MER39B LTR ERV1 3 653 0 28 61 0 0 chr13 61218530 61218579 -58526319 + AT_rich Low_complexity Low_complexity 1 49 0 233 153 69 14 chr13 61218884 61218956 -58525942 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 24 32 0 0 chr13 61218990 61219021 -58525877 + AT_rich Low_complexity Low_complexity 1 31 0 1540 147 86 31 chr13 61219073 61219395 -58525503 + Tigger2a DNA MER2_type 1 340 -94 4001 153 22 27 chr13 61219395 61220109 -58524789 + MER50 LTR ERV1 1 711 -23 2693 73 103 5 chr13 61220114 61220522 -58524376 + LTR7 LTR ERV1 1 448 -2 10635 96 11 30 chr13 61220524 61222634 -58522264 + HERVH LTR ERV1 1 2196 -5517 215 244 0 0 chr13 61223036 61223077 -58521821 - L2 LINE L2 -212 3060 3020 862 314 0 16 chr13 61223197 61223439 -58521459 - MIR SINE MIR -9 253 16 22 35 0 0 chr13 61223675 61223704 -58521194 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr13 61224364 61224388 -58520510 + (TG)n Simple_repeat Simple_repeat 2 25 0 186 267 107 53 chr13 61224441 61224572 -58520326 - MER5B DNA MER1_type 0 178 41 305 326 0 0 chr13 61224835 61224924 -58519974 + L1MC4 LINE L1 6614 6702 -1340 * 328 273 23 0 chr13 61224845 61224933 -58519965 - L1MC4 LINE L1 -1339 6703 6614 303 333 0 0 chr13 61224935 61225025 -58519873 - L1MC4 LINE L1 -1339 6703 6614 633 230 0 0 chr13 61225025 61225177 -58519721 + (TA)n Simple_repeat Simple_repeat 2 153 0 309 326 0 0 chr13 61225187 61225276 -58519622 + L1MC4 LINE L1 6614 6702 -1340 303 333 0 0 chr13 61225273 61225363 -58519535 - L1MC4 LINE L1 -1339 6703 6614 * 576 266 0 0 chr13 61225366 61225535 -58519363 + (TA)n Simple_repeat Simple_repeat 1 169 0 * 603 268 0 0 chr13 61225504 61225683 -58519215 + (TG)n Simple_repeat Simple_repeat 2 180 0 673 212 11 11 chr13 61225710 61225889 -58519009 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2288 158 12 0 chr13 61225895 61226306 -58518592 + L1MA5A LINE L1 5876 6291 -6 24 0 0 0 chr13 61226532 61226556 -58518342 + AT_rich Low_complexity Low_complexity 1 24 0 2721 188 36 17 chr13 61226558 61226784 -58518114 + L1MB8 LINE L1 5520 5740 -438 2172 122 36 30 chr13 61226784 61227146 -58517752 - THE1B LTR MaLR 0 364 1 10730 108 34 0 chr13 61227146 61228674 -58516224 - THE1B-int LTR MaLR 0 1580 1 1877 163 36 30 chr13 61228674 61229036 -58515862 - THE1B LTR MaLR 0 364 1 2721 188 36 17 chr13 61229036 61229441 -58515457 + L1MB8 LINE L1 5739 6165 -13 27 0 0 0 chr13 61229514 61229541 -58515357 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr13 61230408 61230447 -58514451 + AT_rich Low_complexity Low_complexity 1 39 0 489 357 18 22 chr13 61230572 61230796 -58514102 - MIR SINE MIR -22 240 18 231 339 36 60 chr13 61230856 61231024 -58513874 + L2 LINE L2 2936 3099 -173 2442 46 0 0 chr13 61231704 61231989 -58512909 + AluY SINE Alu 1 285 -26 789 289 176 6 chr13 61231993 61232477 -58512421 - L2 LINE L2 -1134 2180 1615 511 282 87 49 chr13 61285385 61285672 -58459226 - L2 LINE L2 0 3313 3016 648 246 18 6 chr13 61285870 61286041 -58458857 - L1ME LINE L1 -504 5662 5490 390 57 0 0 chr13 61286245 61286298 -58458600 + (CA)n Simple_repeat Simple_repeat 2 54 0 309 248 44 87 chr13 61286400 61286540 -58458358 - MIR3 SINE MIR -21 187 55 301 321 182 14 chr13 61289581 61289877 -58455021 + L2 LINE L2 2968 3313 0 23 54 0 0 chr13 61289938 61289975 -58454923 + AT_rich Low_complexity Low_complexity 1 37 0 933 198 60 0 chr13 61291027 61291209 -58453689 + MER20 DNA MER1_type 23 215 -4 1939 156 0 0 chr13 61291329 61291612 -58453286 + AluSx SINE Alu 1 283 -29 407 340 43 19 chr13 61291679 61291841 -58453057 - L2 LINE L2 -467 2847 2682 1565 234 113 87 chr13 61291841 61292449 -58452449 + MLT1E2 LTR MaLR 1 626 0 1594 288 96 9 chr13 61292449 61293002 -58451896 - L2 LINE L2 -628 2686 2086 2002 88 24 3 chr13 61293206 61293502 -58451396 + AluY SINE Alu 1 302 -9 181 276 40 26 chr13 61293606 61293682 -58451216 - L2 LINE L2 -607 2707 2631 238 340 94 30 chr13 61294990 61295225 -58449673 + L2 LINE L2 2365 2614 -700 23 33 0 0 chr13 61296816 61296846 -58448052 + AT_rich Low_complexity Low_complexity 1 30 0 375 322 68 24 chr13 61297325 61297530 -58447368 + MIR SINE MIR 46 259 -3 279 113 0 0 chr13 61297596 61297649 -58447249 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr13 61298108 61298131 -58446767 + AT_rich Low_complexity Low_complexity 1 23 0 270 386 34 17 chr13 61298630 61298863 -58446035 + MIR SINE MIR 20 256 -6 308 266 147 22 chr13 61298976 61299160 -58445738 + L1ME1 LINE L1 5262 5468 -706 313 283 109 11 chr13 61299327 61299511 -58445387 + L1ME3A LINE L1 5724 5925 -245 32 0 0 0 chr13 61299521 61299553 -58445345 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 61299652 61299673 -58445225 + AT_rich Low_complexity Low_complexity 1 21 0 217 139 28 0 chr13 61299812 61299848 -58445050 + (TTG)n Simple_repeat Simple_repeat 2 38 0 326 291 188 12 chr13 61300110 61300275 -58444623 + MIR SINE MIR 42 235 -27 991 229 109 56 chr13 61300602 61300655 -58444243 + L1ME1 LINE L1 5637 5686 -480 2325 70 33 0 chr13 61300655 61300954 -58443944 - AluY SINE Alu -2 309 1 991 229 109 56 chr13 61300954 61301314 -58443584 + L1ME1 LINE L1 5686 6072 -94 450 250 71 36 chr13 61301584 61301752 -58443146 + MER45A DNA AcHobo 5 178 0 541 160 130 0 chr13 61303928 61304028 -58440870 - MER20 DNA MER1_type -1 218 106 920 188 30 10 chr13 61304028 61304230 -58440668 + MER2 DNA MER2_type 1 206 -139 225 0 0 0 chr13 61304271 61304296 -58440602 + (TA)n Simple_repeat Simple_repeat 1 25 0 514 186 0 44 chr13 61304358 61304471 -58440427 - MER20 DNA MER1_type -111 108 1 667 215 15 0 chr13 61305808 61305938 -58438960 + AluJo SINE Alu 3 134 -178 30 59 0 0 chr13 61306052 61306103 -58438795 + AT_rich Low_complexity Low_complexity 1 51 0 13225 152 45 9 chr13 61306281 61308612 -58436286 - Tigger1 DNA MER2_type -1 2417 1 1798 256 58 8 chr13 61308765 61309301 -58435597 - L1MD3 LINE L1 -15 7980 7418 542 245 58 0 chr13 61309301 61309456 -58435442 + MLT1D LTR MaLR 342 505 0 21 0 0 0 chr13 61309473 61309494 -58435404 + AT_rich Low_complexity Low_complexity 1 21 0 218 209 0 0 chr13 61309913 61309956 -58434942 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1695 162 3 30 chr13 61310624 61310927 -58433971 - AluJo SINE Alu -13 299 5 27 29 0 0 chr13 61311030 61311064 -58433834 + AT_rich Low_complexity Low_complexity 1 34 0 214 272 74 37 chr13 61311093 61311174 -58433724 - L2 LINE L2 -8 3305 3222 2497 170 101 11 chr13 61314010 61317279 -58427619 - SATR1 Satellite Satellite -1 3564 1 323 312 13 0 chr13 61318291 61318368 -58426530 + MIR SINE MIR 18 95 -167 3756 228 74 21 chr13 61318450 61319398 -58425500 + L1PA12 LINE L1 10 1361 -6224 * 7385 163 18 20 chr13 61319394 61320858 -58424040 + L1M2 LINE L1 1384 2844 -4005 6331 207 27 31 chr13 61320847 61321372 -58423526 + L1M2 LINE L1 3227 3753 -3095 * 1957 124 7 3 chr13 61321372 61321674 -58423224 + AluSx SINE Alu 1 303 0 6331 207 27 31 chr13 61321674 61322734 -58422164 + L1M2 LINE L1 3753 4806 -2042 1787 162 67 3 chr13 61322735 61323094 -58421804 + L1MA4A LINE L1 5917 6298 -5 1017 298 97 37 chr13 61323224 61324636 -58420262 + L1ME3A LINE L1 3577 5204 -942 382 333 43 0 chr13 61324736 61324898 -58420000 + L1MEc LINE L1 159 327 -6069 1822 252 93 32 chr13 61324899 61325458 -58419440 - MLT1E LTR MaLR 0 593 1 1586 257 52 37 chr13 61325459 61326020 -58418878 + L1MEc LINE L1 325 893 -5503 4184 240 71 25 chr13 61326074 61327464 -58417434 + Charlie1a DNA MER1_type 1 1455 0 269 271 121 30 chr13 61327465 61327631 -58417267 + L1ME3A LINE L1 5803 5983 -187 251 349 69 56 chr13 61328019 61328190 -58416708 + L2 LINE L2 999 1166 -2148 2483 113 3 0 chr13 61328190 61328544 -58416354 - THE1A LTR MaLR 0 355 1 251 349 69 56 chr13 61328544 61328922 -58415976 + L2 LINE L2 1166 1555 -1759 195 42 0 0 chr13 61329130 61329154 -58415744 + (A)n Simple_repeat Simple_repeat 1 24 0 24 53 0 0 chr13 61330019 61330057 -58414841 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 61330221 61330243 -58414655 + AT_rich Low_complexity Low_complexity 1 22 0 265 271 0 0 chr13 61331473 61331532 -58413366 - MIR SINE MIR -1 261 203 2391 209 31 30 chr13 61331536 61332110 -58412788 - MER90 LTR ERV1 0 575 1 378 268 47 38 chr13 61332460 61332673 -58412225 + L1ME4a LINE L1 5691 5905 -216 356 278 6 18 chr13 61332685 61332854 -58412044 + L1ME4a LINE L1 5955 6121 0 28 48 0 0 chr13 61333259 61333301 -58411597 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr13 61333521 61333553 -58411345 + AT_rich Low_complexity Low_complexity 1 32 0 872 287 76 38 chr13 61333826 61334248 -58410650 - LTR40a LTR ERVL -2 517 80 6797 190 49 28 chr13 61334918 61335160 -58409738 + Tigger6b DNA MER2_type 2 237 -1360 1832 219 10 25 chr13 61335160 61335562 -58409336 + MSTD LTR MaLR 1 396 0 6797 190 49 28 chr13 61335562 61335707 -58409191 + Tigger6b DNA MER2_type 237 377 -1220 228 35 0 0 chr13 61335707 61335736 -58409162 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6797 190 49 28 chr13 61335736 61336538 -58408360 + Tigger6b DNA MER2_type 377 1236 -361 1893 200 41 51 chr13 61336538 61337048 -58407850 + MLT1D LTR MaLR 1 505 0 6797 190 49 28 chr13 61337048 61337414 -58407484 + Tigger6b DNA MER2_type 1236 1593 -4 315 0 0 0 chr13 61337419 61337454 -58407444 + (CA)n Simple_repeat Simple_repeat 2 36 0 1297 187 4 26 chr13 61337963 61338193 -58406705 - AluJb SINE Alu -35 277 53 283 260 87 32 chr13 61338907 61339055 -58405843 - L1ME LINE L1 -296 5825 5660 2414 80 0 6 chr13 61339055 61339366 -58405532 - AluSc SINE Alu 0 309 1 283 260 87 32 chr13 61339366 61339436 -58405462 - L1ME LINE L1 -461 5660 5595 560 279 99 22 chr13 61343478 61343700 -58401198 + LTR33 LTR ERVL 131 369 -152 183 80 0 0 chr13 61343896 61343921 -58400977 + (GA)n Simple_repeat Simple_repeat 1 25 0 27 0 0 0 chr13 61344136 61344163 -58400735 + AT_rich Low_complexity Low_complexity 1 27 0 754 309 229 9 chr13 61344274 61344830 -58400068 - L2 LINE L2 0 3313 2645 317 256 152 13 chr13 61344883 61345057 -58399841 - MIR SINE MIR -63 199 5 189 121 0 0 chr13 61347060 61347093 -58397805 + (T)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr13 61347203 61347225 -58397673 + AT_rich Low_complexity Low_complexity 1 22 0 1499 157 89 18 chr13 61347743 61348023 -58396875 - AluJo SINE Alu 0 312 13 203 250 0 0 chr13 61348131 61348179 -58396719 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 288 277 0 0 chr13 61348376 61348441 -58396457 - L2 LINE L2 -2 3311 3247 762 244 24 0 chr13 61349104 61349268 -58395630 - L1MEc LINE L1 -6014 382 215 232 192 19 0 chr13 61349432 61349484 -58395414 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 277 278 31 25 chr13 61350110 61350127 -58394771 - L1MA10 LINE L1 -2 6332 6316 545 289 24 20 chr13 61350127 61350373 -58394525 - L1ME2 LINE L1 -9 6155 5909 275 214 69 69 chr13 61350401 61350532 -58394366 - HAL1b LINE L1 0 1348 1218 395 299 38 5 chr13 61350793 61350977 -58393921 - HAL1b LINE L1 -929 419 230 24 53 0 0 chr13 61352245 61352283 -58392615 + AT_rich Low_complexity Low_complexity 1 38 0 182 293 17 0 chr13 61355092 61355150 -58389748 + MIR SINE MIR 176 234 -28 2551 87 119 5 chr13 61356590 61356992 -58387906 + LTR7 LTR ERV1 1 448 -2 2781 80 0 3 chr13 61356994 61357367 -58387531 + HERVH LTR ERV1 1 372 -7341 * 22928 101 59 48 chr13 61357361 61361194 -58383704 + HERVH LTR ERV1 1275 5149 -2564 1432 120 19 0 chr13 61361195 61361411 -58383487 + HERVH LTR ERV1 5600 5819 -1894 * 2335 92 66 13 chr13 61361404 61361783 -58383115 + HERVH LTR ERV1 7315 7713 0 2461 89 122 10 chr13 61361783 61362186 -58382712 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr13 61362218 61362239 -58382659 + AT_rich Low_complexity Low_complexity 1 21 0 1259 221 67 25 chr13 61363634 61363992 -58380906 + MLT1A2 LTR MaLR 2 374 0 27 0 0 26 chr13 61364176 61364194 -58380704 + AT_rich Low_complexity Low_complexity 1 18 -19 2781 13 0 0 chr13 61364194 61364500 -58380398 + AluYa5 SINE Alu 1 306 -5 27 0 0 26 chr13 61364500 61364519 -58380379 + AT_rich Low_complexity Low_complexity 18 37 0 24 0 0 0 chr13 61364704 61364728 -58380170 + AT_rich Low_complexity Low_complexity 1 24 0 214 167 0 0 chr13 61365559 61365595 -58379303 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 196 298 85 0 chr13 61365937 61365984 -58378914 + L2 LINE L2 3126 3176 -96 2561 159 111 13 chr13 61367339 61370538 -58374360 + SATR1 Satellite Satellite 1 3513 0 2391 162 109 3 chr13 61370567 61371824 -58373074 + SATR1 Satellite Satellite 1 1390 0 2375 172 101 16 chr13 61371856 61378958 -58365940 - SATR1 Satellite Satellite -2 7708 1 2172 160 124 13 chr13 61378986 61379616 -58365282 - SATR1 Satellite Satellite 0 700 1 278 260 151 45 chr13 61380117 61380283 -58364615 - MIR SINE MIR -71 191 16 2447 69 0 13 chr13 61380586 61380892 -58364006 - AluY SINE Alu -9 302 1 242 291 269 8 chr13 61381470 61381604 -58363294 + MER112 DNA MER1_type 3 171 -89 3739 181 30 9 chr13 61381640 61382428 -58362470 - L1MA8 LINE L1 -7 6284 5480 28 0 0 0 chr13 61382512 61382540 -58362358 + AT_rich Low_complexity Low_complexity 1 28 0 180 111 0 0 chr13 61383481 61383508 -58361390 + (TC)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr13 61383620 61383646 -58361252 + (TG)n Simple_repeat Simple_repeat 1 26 0 429 305 97 50 chr13 61383656 61383977 -58360921 - L2 LINE L2 -165 3148 2813 2534 52 7 3 chr13 61384128 61384436 -58360462 - AluY SINE Alu -2 309 1 429 276 27 32 chr13 61384438 61384623 -58360275 - Charlie2b DNA MER1_type -1588 1194 1011 770 158 8 8 chr13 61384624 61384757 -58360141 - FLAM_C SINE Alu -4 139 7 858 333 90 40 chr13 61384766 61385718 -58359180 - Charlie2b DNA MER1_type -1772 1010 11 216 67 0 0 chr13 61385723 61385753 -58359145 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 27357 67 5 7 chr13 61385753 61391901 -58352997 - L1PA5 LINE L1 -24 6130 2 4339 204 41 12 chr13 61391927 61393611 -58351287 - L1MB3 LINE L1 -1 6182 4442 1132 142 147 0 chr13 61393670 61393888 -58351010 - L1PA16 LINE L1 -9 6157 5908 2298 107 0 0 chr13 61393910 61394219 -58350679 + AluSg SINE Alu 1 309 -1 433 293 123 38 chr13 61395318 61395583 -58349315 - HsTC2 DNA Tc2 -1015 883 585 2029 123 10 3 chr13 61395583 61395892 -58349006 - AluSp SINE Alu -2 311 1 433 293 123 38 chr13 61395892 61395943 -58348955 - HsTC2 DNA Tc2 -1313 585 540 311 264 16 85 chr13 61396421 61396550 -58348348 + L2 LINE L2 3194 3313 0 1491 305 74 27 chr13 61396918 61397839 -58347059 + Charlie7 DNA MER1_type 99 1062 -1550 10664 196 121 27 chr13 61398105 61400005 -58344893 + L1MA4 LINE L1 14 1733 -4749 1767 149 10 27 chr13 61400005 61400141 -58344757 + AluSx SINE Alu 1 138 -174 2249 75 3 0 chr13 61400141 61400446 -58344452 + AluY SINE Alu 1 306 0 1767 149 10 27 chr13 61400446 61400603 -58344295 + AluSx SINE Alu 138 290 -22 10664 196 121 27 chr13 61400603 61404592 -58340306 + L1MA4 LINE L1 1733 6476 -6 999 223 51 56 chr13 61404685 61405080 -58339818 + Charlie7 DNA MER1_type 1443 1835 -777 251 286 0 33 chr13 61405192 61405283 -58339615 + MIR SINE MIR 175 262 0 2260 171 23 11 chr13 61405497 61406209 -58338689 - L1P4 LINE L1 -571 7033 6315 3716 217 23 33 chr13 61406222 61407433 -58337465 - L1P4 LINE L1 -4172 3412 2203 702 379 10 5 chr13 61408095 61408499 -58336399 - L1P4 LINE L1 -7166 415 10 2003 119 10 3 chr13 61408515 61408808 -58336090 - AluSx SINE Alu -13 299 5 1179 138 5 9 chr13 61408877 61409087 -58335811 - L1MA9 LINE L1 0 6312 6104 1370 177 34 96 chr13 61409087 61409476 -58335422 + MLT1A1 LTR MaLR 1 505 0 3835 163 35 28 chr13 61409476 61409769 -58335129 - L1MA9 LINE L1 -212 6100 5811 264 77 0 0 chr13 61409769 61409808 -58335090 + (TG)n Simple_repeat Simple_repeat 2 40 0 3835 163 35 28 chr13 61409808 61410276 -58334622 - L1MA9 LINE L1 -501 5811 5333 2444 211 86 29 chr13 61410661 61411315 -58333583 + L1MB5 LINE L1 5354 6044 -130 469 279 36 36 chr13 61411335 61411554 -58333344 - HAL1b LINE L1 -1041 307 89 208 308 90 77 chr13 61413311 61413467 -58331431 - L2 LINE L2 -219 3053 2896 668 352 91 20 chr13 61414018 61414467 -58330431 - L2 LINE L2 -518 2796 2316 22 35 0 0 chr13 61414515 61414544 -58330354 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 61415048 61415069 -58329829 + AT_rich Low_complexity Low_complexity 1 21 0 271 162 0 59 chr13 61416939 61417007 -58327891 - MER53 DNA DNA -20 169 106 309 288 0 0 chr13 61417013 61417093 -58327805 - L1MC4 LINE L1 -1346 6696 6617 30 0 0 0 chr13 61417234 61417264 -58327634 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr13 61417761 61417793 -58327105 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr13 61417929 61417951 -58326947 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr13 61417990 61418036 -58326862 + AT_rich Low_complexity Low_complexity 1 46 0 497 347 60 9 chr13 61418985 61419201 -58325697 - MIR SINE MIR -15 247 21 881 182 75 0 chr13 61419566 61419755 -58325143 + AluJb SINE Alu 121 321 0 1717 104 17 8 chr13 61419779 61420020 -58324878 + AluSx SINE Alu 56 298 -14 305 121 45 30 chr13 61420601 61420667 -58324231 - MLT1A1 LTR MaLR -295 70 4 309 310 35 49 chr13 61420738 61420880 -58324018 - L1ME LINE L1 -621 5545 5406 335 336 80 22 chr13 61420959 61421509 -58323389 - L1ME LINE L1 -831 5315 4734 28 29 0 0 chr13 61421649 61421684 -58323214 + AT_rich Low_complexity Low_complexity 1 35 0 22181 191 16 30 chr13 61421702 61423218 -58321680 - L1PA11 LINE L1 0 7612 6075 2335 77 0 3 chr13 61423218 61423516 -58321382 - AluY SINE Alu -14 297 1 22181 191 16 30 chr13 61423516 61427791 -58317107 - L1PA11 LINE L1 -1537 6075 1151 1827 132 0 4 chr13 61427791 61428056 -58316842 + AluSx SINE Alu 33 296 -16 22181 191 16 30 chr13 61428056 61429191 -58315707 - L1PA11 LINE L1 -6461 1151 1 22 0 0 0 chr13 61429376 61429398 -58315500 + AT_rich Low_complexity Low_complexity 1 22 0 425 234 138 14 chr13 61429530 61429675 -58315223 - L1ME LINE L1 -2015 4131 3969 769 295 102 26 chr13 61429746 61430590 -58314308 - L1ME LINE L1 -2370 3776 2869 282 250 54 0 chr13 61430634 61430726 -58314172 - L1MC4 LINE L1 -32 8010 7914 2407 139 25 7 chr13 61430754 61431158 -58313740 + LTR57 LTR ERVL 1 411 0 8014 154 44 12 chr13 61431158 61434101 -58310797 + LTR57-int LTR ERVL 1 3167 -2176 * 8273 163 23 1 chr13 61434089 61435433 -58309465 + LTR57-int LTR ERVL 3971 5343 0 2328 141 35 20 chr13 61435433 61435838 -58309060 + LTR57 LTR ERVL 1 411 0 587 272 47 5 chr13 61435868 61436059 -58308839 - L1MC4 LINE L1 -155 7887 7689 580 270 54 11 chr13 61436399 61436584 -58308314 - MER112 DNA MER1_type -1 259 67 200 238 0 0 chr13 61436827 61436869 -58308029 + T-rich Low_complexity Low_complexity 1 42 0 210 221 44 0 chr13 61437625 61437693 -58307205 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 182 333 115 0 chr13 61437818 61437896 -58307002 - L2 LINE L2 -8 3264 3178 230 375 68 25 chr13 61438816 61439096 -58305802 + L2 LINE L2 2683 2974 -340 1552 179 42 31 chr13 61439831 61440189 -58304709 + THE1B LTR MaLR 1 362 -2 326 309 11 9 chr13 61441325 61441435 -58303463 + MER34 LTR ERV1 7 123 -446 422 236 112 74 chr13 61441505 61441915 -58302983 + LTR48 LTR ERV1 266 583 -2 307 306 81 17 chr13 61442234 61442407 -58302491 + L2 LINE L2 3008 3191 -122 349 230 109 72 chr13 61442452 61442701 -58302197 + LTR48 LTR ERV1 290 529 -56 204 314 70 12 chr13 61442702 61442788 -58302110 + L2 LINE L2 3182 3272 0 1109 222 58 5 chr13 61443573 61443844 -58301054 + MER74A LTR ERVL 12 346 -276 1217 221 71 11 chr13 61443909 61444176 -58300722 - MLT1A1 LTR MaLR 0 365 83 1231 230 109 22 chr13 61444185 61444831 -58300067 + MER50 LTR ERV1 10 732 -2 322 232 37 12 chr13 61444832 61444914 -58299984 - MLT1A1 LTR MaLR -281 84 1 347 192 26 0 chr13 61444914 61444992 -58299906 + MER74A LTR ERVL 466 545 -13 1946 121 0 11 chr13 61445285 61445567 -58299331 + AluSx SINE Alu 4 282 -30 231 61 0 0 chr13 61445572 61445605 -58299293 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1281 96 21 5 chr13 61445835 61446022 -58298876 + MER30B DNA MER1_type 1 190 0 1956 161 0 0 chr13 61446047 61446346 -58298552 + AluSx SINE Alu 1 299 -13 634 195 89 0 chr13 61446430 61446551 -58298347 + MER39 LTR ERV1 1 132 -575 943 189 105 55 chr13 61446551 61446789 -58298109 + LTR8A LTR ERV1 1 250 -477 3080 153 9 7 chr13 61446791 61447335 -58297563 - MSTA-int LTR MaLR -1078 533 1 580 168 0 10 chr13 61447335 61447436 -58297462 - MSTA LTR MaLR 0 428 329 1671 180 28 46 chr13 61447463 61447857 -58297041 - LTR8A LTR ERV1 -307 420 34 995 316 70 42 chr13 61447937 61448478 -58296420 - MLT2F LTR ERVL -7 656 101 5556 317 64 22 chr13 61448583 61450966 -58293932 - ERVL-F LTR ERVL -9 5755 3272 342 297 16 16 chr13 61450975 61451103 -58293795 - ERVL-F LTR ERVL -2616 2869 2742 1299 216 51 73 chr13 61451103 61451571 -58293327 + LTR40c LTR ERVL 1 458 -7 2132 306 70 7 chr13 61451588 61452836 -58292062 - ERVL-F LTR ERVL -2977 2787 1432 31777 78 4 3 chr13 61454801 61459991 -58284907 - L1PA6 LINE L1 -3 6151 959 3993 172 25 4 chr13 61459986 61460707 -58284191 - L1PA6 LINE L1 -5400 746 11 * 239 225 14 0 chr13 61460879 61460950 -58283948 + (TA)n Simple_repeat Simple_repeat 1 72 0 261 180 0 0 chr13 61461772 61461822 -58283076 + (TA)n Simple_repeat Simple_repeat 2 51 0 2701 158 38 31 chr13 61462330 61462906 -58281992 - L1MC1 LINE L1 0 6333 5754 864 264 18 22 chr13 61462906 61463182 -58281716 - L1M4 LINE L1 -1009 5137 4863 274 304 76 23 chr13 61463595 61463766 -58281132 + L2 LINE L2 3134 3313 0 343 319 56 9 chr13 61463894 61464107 -58280791 - L1MC1 LINE L1 -373 5748 5526 22 35 0 0 chr13 61465247 61465276 -58279622 + AT_rich Low_complexity Low_complexity 1 29 0 252 111 0 0 chr13 61465359 61465404 -58279494 - LTR66 LTR ERVL -172 438 394 301 170 0 151 chr13 61465429 61465535 -58279363 - L1MC4 LINE L1 -1339 6703 6614 279 0 0 0 chr13 61465539 61465570 -58279328 + (GA)n Simple_repeat Simple_repeat 2 32 0 1868 127 22 0 chr13 61465576 61465852 -58279046 - AluSx SINE Alu -30 282 1 22 0 0 0 chr13 61465854 61465876 -58279022 + AT_rich Low_complexity Low_complexity 1 22 0 504 172 0 104 chr13 61466562 61466696 -58278202 - L1MA10 LINE L1 -3 6331 6212 314 325 86 31 chr13 61466899 61467062 -58277836 + MIR SINE MIR 14 185 -77 21 0 0 0 chr13 61467920 61467941 -58276957 + AT_rich Low_complexity Low_complexity 1 21 0 335 245 10 184 chr13 61468442 61468752 -58276146 - L1ME3A LINE L1 -222 5948 5693 21 0 0 0 chr13 61468895 61468916 -58275982 + AT_rich Low_complexity Low_complexity 1 21 0 226 355 39 13 chr13 61469163 61469318 -58275580 - L2 LINE L2 -943 2371 2213 239 225 14 0 chr13 61471410 61471481 -58273417 + (TA)n Simple_repeat Simple_repeat 1 72 0 1161 214 30 0 chr13 61471653 61471934 -58272964 + L1P3 LINE L1 10 630 -5831 216 0 0 0 chr13 61473033 61473057 -58271841 + (T)n Simple_repeat Simple_repeat 1 24 0 180 231 15 77 chr13 61473492 61473557 -58271341 - L3b LINE CR1 -197 1386 1326 25 51 0 0 chr13 61474072 61474111 -58270787 + AT_rich Low_complexity Low_complexity 1 39 0 265 290 96 91 chr13 61475343 61475846 -58269052 - L2 LINE L2 -190 3082 2578 181 238 202 24 chr13 61476733 61476817 -58268081 + MIR SINE MIR 164 262 0 327 140 0 0 chr13 61477073 61477123 -58267775 + Alu SINE Alu 242 291 -11 371 215 0 0 chr13 61477139 61477204 -58267694 - MIR3 SINE MIR -33 175 111 39 50 0 0 chr13 61477569 61477629 -58267269 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr13 61477713 61477734 -58267164 + AT_rich Low_complexity Low_complexity 1 21 0 193 226 48 32 chr13 61478012 61478074 -58266824 - MIR3 SINE MIR -9 199 137 23 33 0 0 chr13 61478631 61478661 -58266237 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr13 61479063 61479105 -58265793 + AT_rich Low_complexity Low_complexity 1 42 0 11608 130 7 13 chr13 61479523 61481469 -58263429 - L1P3 LINE L1 -2222 4239 2305 9452 114 12 1 chr13 61481472 61482845 -58262053 - L1P3 LINE L1 -5065 1396 8 268 299 104 0 chr13 61483147 61483281 -58261617 - MER104 DNA Tc2 -32 148 1 965 216 16 54 chr13 61483749 61484004 -58260894 + LTR40a LTR ERVL 1 198 -321 2618 201 20 4 chr13 61484004 61484511 -58260387 + MLT2B2 LTR ERVL 1 515 0 965 216 16 54 chr13 61484511 61484542 -58260356 + LTR40a LTR ERVL 198 229 -290 195 361 0 0 chr13 61485473 61485534 -58259364 + L3b LINE CR1 1520 1580 -3 183 242 0 0 chr13 61486301 61486334 -58258564 - L2 LINE L2 -18 3295 3263 183 242 242 0 chr13 61486302 61486364 -58258534 - MIR SINE MIR -13 249 173 195 227 146 55 chr13 61486467 61486577 -58258321 - MIR SINE MIR -62 200 81 183 218 18 55 chr13 61488556 61488611 -58256287 - L2 LINE L2 -776 2538 2486 8176 32 3 7 chr13 61489778 61490120 -58254778 + L1PA4 LINE L1 4372 4714 -1441 2551 65 0 0 chr13 61490120 61490430 -58254468 + AluY SINE Alu 1 310 -1 8176 32 3 7 chr13 61490430 61491881 -58253017 + L1PA4 LINE L1 4714 6154 -1 1765 117 62 88 chr13 61491921 61492306 -58252592 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr13 61493399 61493425 -58251473 + AT_rich Low_complexity Low_complexity 1 26 0 1236 244 48 77 chr13 61493537 61493992 -58250906 + LTR40b LTR ERVL 12 453 -9 518 153 0 10 chr13 61494229 61494327 -58250571 + GA-rich Low_complexity Low_complexity 3 99 0 977 70 11 48 chr13 61494329 61494516 -58250382 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1959 141 3 3 chr13 61494933 61495224 -58249674 - AluSx SINE Alu -21 291 1 23 0 0 0 chr13 61495697 61495720 -58249178 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr13 61496543 61496570 -58248328 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1975 116 11 0 chr13 61496575 61496851 -58248047 - AluSg SINE Alu -31 279 1 204 40 0 0 chr13 61496855 61496880 -58248018 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 12910 103 13 2 chr13 61496881 61499545 -58245353 - L1PA7 LINE L1 -13 6141 3455 1256 158 130 12 chr13 61501388 61501641 -58243257 + AluJo SINE Alu 27 309 -3 257 319 0 26 chr13 61501645 61501761 -58243137 + GA-rich Low_complexity Low_complexity 3 115 0 471 319 32 11 chr13 61501801 61501986 -58242912 - MLT1I LTR MaLR -120 289 101 2266 99 7 0 chr13 61502618 61502920 -58241978 + AluSq SINE Alu 1 304 -9 39 0 0 0 chr13 61505157 61505196 -58239702 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 61505329 61505350 -58239548 + AT_rich Low_complexity Low_complexity 1 21 0 381 348 96 39 chr13 61505476 61505936 -58238962 + L2 LINE L2 694 1179 -2135 944 214 24 71 chr13 61506102 61506400 -58238498 + MLT1D LTR MaLR 244 502 -3 310 349 95 9 chr13 61506410 61506725 -58238173 + L1ME3A LINE L1 5607 5948 -222 640 287 0 59 chr13 61507193 61507430 -58237468 - MIR SINE MIR -31 231 9 224 266 48 65 chr13 61507491 61507615 -58237283 + MIR SINE MIR 114 235 -27 22 56 0 0 chr13 61508139 61508175 -58236723 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr13 61508478 61508504 -58236394 + AT_rich Low_complexity Low_complexity 1 26 0 851 184 44 0 chr13 61509188 61509346 -58235552 - MER63A DNA MER1_type -45 165 1 766 278 46 23 chr13 61509436 61509785 -58235113 - L1M4 LINE L1 -3647 2499 2143 225 333 11 0 chr13 61510228 61510315 -58234583 + L1MB8 LINE L1 2151 2238 -3908 24 32 0 0 chr13 61511618 61511649 -58233249 + AT_rich Low_complexity Low_complexity 1 31 0 191 277 0 21 chr13 61512050 61512097 -58232801 + L2 LINE L2 3265 3310 -3 501 112 56 128 chr13 61512998 61513123 -58231775 - LTR9B LTR ERV1 -84 560 445 552 288 6 40 chr13 61514213 61514390 -58230508 + MER5B DNA MER1_type 7 177 -1 324 366 0 8 chr13 61514822 61514956 -58229942 + L2 LINE L2 1164 1296 -2018 3758 215 75 5 chr13 61514972 61516764 -58228134 + L1MB8 LINE L1 4263 6177 -1 894 286 114 45 chr13 61516765 61517383 -58227515 + L2 LINE L2 1302 2624 -690 745 285 170 25 chr13 61517405 61517893 -58227005 - HAL1 LINE L1 -1893 614 56 520 313 109 60 chr13 61517945 61518313 -58226585 + L2 LINE L2 1825 2210 -1104 966 177 6 0 chr13 61518325 61518483 -58226415 + FRAM SINE Alu 1 153 -23 22 35 0 0 chr13 61518484 61518513 -58226385 + AT_rich Low_complexity Low_complexity 1 29 0 369 291 74 48 chr13 61518525 61518714 -58226184 + L2 LINE L2 2225 2418 -896 234 340 62 7 chr13 61518723 61518867 -58226031 + L2 LINE L2 2722 2873 -441 249 324 64 35 chr13 61519351 61519524 -58225374 - L2 LINE L2 -1217 2097 1920 23 0 0 0 chr13 61519996 61520019 -58224879 + AT_rich Low_complexity Low_complexity 1 23 0 1637 217 17 8 chr13 61520540 61520895 -58224003 - MLT1A1 LTR MaLR -4 361 4 232 297 275 0 chr13 61521135 61521226 -58223672 + MER5A DNA MER1_type 69 184 -5 445 250 5 107 chr13 61521239 61521435 -58223463 - MER5B DNA MER1_type 0 178 3 344 214 0 10 chr13 61521773 61521871 -58223027 + CT-rich Low_complexity Low_complexity 2 98 0 6320 101 2 2 chr13 61521948 61522920 -58221978 + L1PA8 LINE L1 5200 6171 -1 2084 131 23 9 chr13 61522928 61523272 -58221626 + L1MA2 LINE L1 5936 6284 -20 2064 136 36 28 chr13 61523374 61523735 -58221163 - THE1B LTR MaLR 0 364 1 215 303 169 17 chr13 61524291 61524469 -58220429 + MIR SINE MIR 52 256 -6 227 262 68 29 chr13 61525539 61525642 -58219256 + L1ME LINE L1 5558 5664 -457 238 138 25 38 chr13 61526173 61526253 -58218645 + GA-rich Low_complexity Low_complexity 3 81 0 278 354 49 6 chr13 61526440 61526604 -58218294 + L2 LINE L2 2881 3051 -221 274 298 113 48 chr13 61529472 61529640 -58215258 - MIR SINE MIR 0 262 84 1701 39 0 0 chr13 61529896 61530104 -58214794 + L1PA4 LINE L1 5948 6155 0 287 220 104 46 chr13 61530128 61530301 -58214597 - MER53 DNA DNA 0 189 7 2271 92 0 10 chr13 61530967 61531281 -58213617 - AluY SINE Alu 0 311 1 352 109 0 0 chr13 61532687 61532733 -58212165 - AluJo SINE Alu -17 285 240 3978 142 22 42 chr13 61532747 61534015 -58210883 - pTR5 LTR ERV1 -143 2295 743 1353 183 17 12 chr13 61534015 61534255 -58210643 - AluJo SINE Alu -71 241 1 186 349 0 16 chr13 61534693 61534756 -58210142 - MIR SINE MIR -130 78 17 362 331 66 7 chr13 61534774 61534910 -58209988 - MER5A DNA MER1_type -3 186 43 350 339 8 8 chr13 61536420 61536541 -58208357 + MER5B DNA MER1_type 4 124 -54 1229 249 52 6 chr13 61537828 61538158 -58206740 + MER2 DNA MER2_type 1 345 0 931 80 14 14 chr13 61639811 61639949 -58104949 + L1PA7 LINE L1 6015 6152 -2 310 286 107 50 chr13 61640195 61640335 -58104563 + L1MEd LINE L1 39 186 -5933 29 60 0 0 chr13 61640421 61640471 -58104427 + AT_rich Low_complexity Low_complexity 1 50 0 252 200 0 0 chr13 61640535 61640605 -58104293 + (TA)n Simple_repeat Simple_repeat 1 70 0 1851 256 63 30 chr13 61640609 61641386 -58103512 - L1MC4 LINE L1 -131 7911 7109 258 32 0 0 chr13 61641420 61641451 -58103447 + (TATG)n Simple_repeat Simple_repeat 3 33 0 1953 90 57 40 chr13 61642182 61642483 -58102415 + AluY SINE Alu 1 306 -5 596 220 38 13 chr13 61642587 61642746 -58102152 - MER92B LTR ERV1 -2 634 472 381 281 59 20 chr13 61642803 61642956 -58101942 - MER92B LTR ERV1 -262 374 216 11487 203 23 27 chr13 61642957 61644156 -58100742 + L1PA15-16 LINE L1 1 1203 -5646 2130 158 34 6 chr13 61644156 61644510 -58100388 - THE1B LTR MaLR 0 364 1 11263 106 6 0 chr13 61644510 61646081 -58098817 - THE1B-int LTR MaLR 0 1580 1 2200 150 31 6 chr13 61646083 61646436 -58098462 - THE1B LTR MaLR -2 362 1 11487 203 23 27 chr13 61646436 61647486 -58097412 + L1PA15-16 LINE L1 1203 2256 -4593 1973 5 0 0 chr13 61647486 61647709 -58097189 + L1PA2 LINE L1 5931 6153 -2 11487 203 23 27 chr13 61647709 61649415 -58095483 + L1PA15-16 LINE L1 2256 3715 -3134 1211 217 73 18 chr13 61649415 61649538 -58095360 + AluJo SINE Alu 1 116 -186 225 94 0 0 chr13 61649538 61649570 -58095328 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1211 217 73 18 chr13 61649570 61649732 -58095166 + AluJo SINE Alu 116 302 0 11487 203 23 27 chr13 61649732 61650992 -58093906 + L1PA15-16 LINE L1 3715 4979 -1870 1226 164 46 4 chr13 61651012 61651250 -58093648 + L1PA16 LINE L1 5917 6164 -2 30 59 0 0 chr13 61651250 61651301 -58093597 + AT_rich Low_complexity Low_complexity 1 51 0 533 212 10 12 chr13 61651695 61651884 -58093014 - MER92B LTR ERV1 -408 228 7 1867 166 10 0 chr13 61652064 61652354 -58092544 + AluSx SINE Alu 8 300 -12 232 197 13 40 chr13 61653155 61653231 -58091667 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 794 250 26 16 chr13 61656014 61656206 -58088692 + MER20 DNA MER1_type 26 219 0 25 51 0 0 chr13 61656497 61656536 -58088362 + AT_rich Low_complexity Low_complexity 1 39 0 198 244 0 0 chr13 61656638 61656679 -58088219 + L2 LINE L2 3224 3264 -8 470 355 84 25 chr13 61656896 61657335 -58087563 + L2 LINE L2 2277 2741 -573 2555 59 0 0 chr13 61657847 61658167 -58086731 - L1P3 LINE L1 -351 5803 5484 246 271 47 28 chr13 61659003 61659110 -58085788 + L1MC4 LINE L1 6613 6721 -1321 386 213 53 0 chr13 61659446 61659540 -58085358 - MER3 DNA MER1_type 0 209 111 257 229 12 0 chr13 61659543 61659626 -58085272 - L1PA13 LINE L1 -1712 5085 5002 1366 181 52 44 chr13 61659630 61659973 -58084925 + MER4A LTR ERV1 1 346 -318 679 139 284 23 chr13 61660024 61660239 -58084659 + MER4C LTR ERV1 176 446 -19 5275 223 38 40 chr13 61660262 61660917 -58083981 - L1PA13 LINE L1 -1798 4999 4344 243 0 0 0 chr13 61660917 61660944 -58083954 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 5275 223 38 40 chr13 61660944 61661433 -58083465 - L1PA13 LINE L1 -2453 4344 3856 2790 13 0 0 chr13 61661433 61661740 -58083158 - AluYa5 SINE Alu -4 307 1 5275 223 38 40 chr13 61661740 61662158 -58082740 - L1PA13 LINE L1 -2941 3856 3439 1738 152 165 24 chr13 61662171 61662546 -58082352 - MSTA LTR MaLR 0 428 1 4731 148 9 14 chr13 61662546 61663312 -58081586 - MSTA-int LTR MaLR 0 1580 819 1196 233 11 82 chr13 61663313 61663690 -58081208 + LTR9 LTR ERV1 1 350 -262 1317 132 0 5 chr13 61663690 61663903 -58080995 - MSTA-int LTR MaLR -1439 212 1 834 142 31 46 chr13 61663903 61664135 -58080763 - THE1C LTR MaLR 0 375 207 459 185 0 0 chr13 61664135 61664227 -58080671 + GA-rich Low_complexity Low_complexity 2 93 0 568 86 108 11 chr13 61664330 61664423 -58080475 - THE1C LTR MaLR -326 102 1 4302 243 27 36 chr13 61664424 61665812 -58079086 - L1PA13 LINE L1 -3368 3429 2027 2373 75 0 3 chr13 61665812 61666105 -58078793 - AluY SINE Alu -19 292 1 4302 243 27 36 chr13 61666105 61666807 -58078091 - L1PA13 LINE L1 -4770 2027 1321 1924 326 83 21 chr13 61666786 61667645 -58077253 - L1PA13 LINE L1 -5875 912 1 * 391 208 62 79 chr13 61667919 61668159 -58076739 + MER5C DNA MER1_type 72 307 -17 1835 252 62 50 chr13 61668206 61668879 -58076019 + L1ME1 LINE L1 4939 5634 -532 198 118 0 0 chr13 61668879 61668913 -58075985 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1835 252 62 50 chr13 61668913 61669448 -58075450 + L1ME1 LINE L1 5634 6161 -5 7538 27 0 0 chr13 61671148 61672437 -58072461 - L1PA4 LINE L1 0 6155 4863 23 54 0 0 chr13 61674741 61674778 -58070120 + AT_rich Low_complexity Low_complexity 1 37 0 1839 121 7 0 chr13 61675235 61675516 -58069382 + L1PB2 LINE L1 5868 6150 -1 435 340 85 14 chr13 61676829 61677111 -58067787 - MLT1H LTR MaLR 0 549 248 295 292 137 29 chr13 61677937 61678074 -58066824 + MIR SINE MIR 56 206 -31 862 189 0 42 chr13 61678518 61678709 -58066189 - AluJo SINE Alu -9 303 121 272 321 158 53 chr13 61679190 61679564 -58065334 - L2 LINE L2 -571 2743 2331 447 377 33 11 chr13 61679631 61679997 -58064901 - L2 LINE L2 -1223 2091 1718 10480 171 60 3 chr13 61680168 61682124 -58062774 - Tigger1 DNA MER2_type -351 2067 1 270 81 0 0 chr13 61682626 61682663 -58062235 + (CA)n Simple_repeat Simple_repeat 2 38 0 2810 129 7 5 chr13 61683259 61683701 -58061197 - L1PB3 LINE L1 -5 6149 5707 419 304 33 33 chr13 61684176 61684360 -58060538 - MIR SINE MIR -67 195 12 599 248 8 0 chr13 61684889 61685014 -58059884 - L2 LINE L2 -1 3312 3187 284 271 25 127 chr13 61685538 61685796 -58059102 + MIR SINE MIR 17 251 -11 277 188 0 0 chr13 61685764 61685812 -58059086 + L2 LINE L2 3265 3312 -1 * 21 57 0 0 chr13 61686133 61686168 -58058730 + AT_rich Low_complexity Low_complexity 1 35 0 769 262 117 34 chr13 61687225 61687523 -58057375 + MER5C DNA MER1_type 2 324 0 27 0 0 0 chr13 61688922 61688949 -58055949 + AT_rich Low_complexity Low_complexity 1 27 0 194 369 33 8 chr13 61689503 61689625 -58055273 + MER5A DNA MER1_type 65 189 0 592 343 19 0 chr13 61690242 61690452 -58054446 - MIR SINE MIR -26 236 23 1542 195 29 19 chr13 61690573 61690881 -58054017 + MLT1A1 LTR MaLR 1 311 -54 557 255 121 31 chr13 61690926 61691216 -58053682 - Tigger8 DNA MER2_type -204 462 147 420 143 14 0 chr13 61692257 61692327 -58052571 + MLT1A1 LTR MaLR 295 365 0 554 191 0 18 chr13 61692699 61692809 -58052089 - MLT1E2 LTR MaLR 0 626 519 3502 167 43 22 chr13 61692813 61693024 -58051874 - MER50 LTR ERV1 -24 710 505 243 0 0 0 chr13 61693024 61693051 -58051847 + (TA)n Simple_repeat Simple_repeat 2 28 0 2515 62 10 0 chr13 61693051 61693358 -58051540 - AluSq SINE Alu -3 310 1 3502 167 43 22 chr13 61693358 61693838 -58051060 - MER50 LTR ERV1 -228 506 3 2179 136 15 6 chr13 61693840 61694170 -58050728 - MER50-int LTR ERV1 -8 7197 6865 440 72 75 15 chr13 61694156 61694236 -58050662 + MER41-int LTR ERV1 4644 5352 -1235 * 1272 120 9 1 chr13 61694240 61694509 -58050389 + L1PA10 LINE L1 5171 5440 -691 2234 92 3 3 chr13 61694514 61694806 -58050092 + AluY SINE Alu 5 296 -15 852 181 0 0 chr13 61694808 61694957 -58049941 + AluSg/x SINE Alu 133 281 -29 4999 97 9 15 chr13 61694957 61695703 -58049195 + L1PA10 LINE L1 5423 6164 -4 1290 69 29 0 chr13 61695704 61695878 -58049020 + MER41-int LTR ERV1 4710 4888 -1058 1846 186 14 6 chr13 61695878 61696233 -58048665 - MER50 LTR ERV1 -376 358 1 659 246 127 131 chr13 61696233 61696317 -58048581 - MLT1E2 LTR MaLR -121 505 422 186 43 0 0 chr13 61696317 61696340 -58048558 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 659 246 127 131 chr13 61696340 61696759 -58048139 - MLT1E2 LTR MaLR -204 422 1 25 0 0 0 chr13 61697560 61697585 -58047313 + AT_rich Low_complexity Low_complexity 1 25 0 244 287 16 101 chr13 61697994 61698123 -58046775 - L2 LINE L2 -18 3254 3137 1101 256 31 5 chr13 61699366 61699785 -58045113 + L1MC4 LINE L1 7071 7552 -490 5810 170 16 25 chr13 61699789 61700948 -58043950 - L1MC1 LINE L1 0 6333 5184 22 56 0 0 chr13 61700969 61701005 -58043893 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr13 61701063 61701101 -58043797 + AT_rich Low_complexity Low_complexity 1 38 0 2873 109 13 29 chr13 61701252 61701703 -58043195 + MLT2A1 LTR ERVL 1 444 0 300 243 14 0 chr13 61701712 61701786 -58043112 + L1MC4 LINE L1 7941 8015 -27 395 316 68 79 chr13 61701823 61702376 -58042522 - L2 LINE L2 -70 3243 2687 209 160 0 40 chr13 61702585 61702635 -58042263 + (TATG)n Simple_repeat Simple_repeat 3 50 0 518 286 0 0 chr13 61704930 61705049 -58039849 + MER3 DNA MER1_type 1 119 -90 187 218 11 11 chr13 61705378 61705465 -58039433 + (TA)n Simple_repeat Simple_repeat 2 88 0 360 0 0 0 chr13 61705466 61705506 -58039392 + (TG)n Simple_repeat Simple_repeat 2 41 0 249 135 27 0 chr13 61705506 61705543 -58039355 - Tigger1 DNA MER2_type -1 2417 2380 962 179 29 92 chr13 61705932 61706172 -58038726 + MER67D LTR ERV1 3 227 -287 326 194 0 126 chr13 61706183 61706286 -58038612 - L1MC4 LINE L1 -1339 6703 6614 * 339 226 38 90 chr13 61706239 61706372 -58038526 + L1MC4 LINE L1 6614 6739 -1303 368 267 47 60 chr13 61706565 61706715 -58038183 + L2 LINE L2 2662 2809 -505 355 346 109 43 chr13 61706726 61707606 -58037292 + L2 LINE L2 2354 3309 -4 180 0 0 0 chr13 61707677 61707697 -58037201 + (T)n Simple_repeat Simple_repeat 1 20 0 321 214 12 60 chr13 61708230 61708314 -58036584 - MER2 DNA MER2_type -264 81 2 1121 207 213 3 chr13 61708680 61709037 -58035861 + LTR54B LTR ERV1 32 463 -35 2398 72 3 0 chr13 61709105 61709411 -58035487 + AluY SINE Alu 1 307 -4 881 191 37 104 chr13 61709926 61710167 -58034731 + MER101B LTR ERV1 4 228 -342 232 200 17 50 chr13 61710366 61710426 -58034472 + MER101 LTR ERV1 380 437 -37 1770 154 0 30 chr13 61710432 61710737 -58034161 + AluSx SINE Alu 7 302 -10 928 212 163 23 chr13 61710740 61711004 -58033894 + AluJb SINE Alu 2 302 0 1264 236 67 22 chr13 61711195 61711551 -58033347 + MLT1A2 LTR MaLR 1 372 -2 207 0 0 0 chr13 61711766 61711789 -58033109 + (TG)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 61713238 61713259 -58031639 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 61713999 61714037 -58030861 + AT_rich Low_complexity Low_complexity 1 38 0 3824 210 44 7 chr13 61714627 61715561 -58029337 + L1MB3 LINE L1 5208 6176 -7 228 273 15 0 chr13 61715679 61715745 -58029153 + CT-rich Low_complexity Low_complexity 3 69 0 267 31 0 0 chr13 61716114 61716146 -58028752 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 600 248 39 78 chr13 61716146 61716452 -58028446 - L1ME2 LINE L1 -13 6151 5858 709 241 141 54 chr13 61716487 61717026 -58027872 - L1ME2 LINE L1 -951 5195 4610 3031 219 35 19 chr13 61717030 61717818 -58027080 - L1MB2 LINE L1 -2 6871 6071 407 259 77 16 chr13 61717823 61718070 -58026828 - L1ME2 LINE L1 -1537 4609 4348 1461 277 46 29 chr13 61718078 61718792 -58026106 - L1ME2 LINE L1 -1938 4208 3483 5962 170 55 10 chr13 61718841 61719991 -58024907 - Tigger3b DNA MER2_type 0 1231 31 1224 194 33 35 chr13 61719992 61720324 -58024574 - L1M2 LINE L1 -734 5557 5222 23 0 0 0 chr13 61720373 61720396 -58024502 + AT_rich Low_complexity Low_complexity 1 23 0 5446 201 51 6 chr13 61720396 61721659 -58023239 - L1MB2 LINE L1 -873 5975 4653 279 79 0 0 chr13 61721659 61721697 -58023201 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 5446 201 51 6 chr13 61721697 61721718 -58023180 - L1MB2 LINE L1 -2195 4653 4634 405 331 30 22 chr13 61721715 61721960 -58022938 - L1PA13 LINE L1 -6574 213 3 * 1815 264 20 29 chr13 61721972 61722869 -58022029 - L1MB2 LINE L1 -3212 3636 2797 1905 285 74 28 chr13 61722880 61724245 -58020653 - L1MEc LINE L1 -2630 3585 2194 192 163 0 0 chr13 61724514 61724557 -58020341 + (TA)n Simple_repeat Simple_repeat 2 44 0 6767 211 119 59 chr13 61724558 61725085 -58019813 - L1MC3 LINE L1 -24 7761 7268 340 277 21 11 chr13 61725085 61725179 -58019719 - MLT1F1 LTR MaLR -428 139 45 6767 211 119 59 chr13 61725179 61726100 -58018798 - L1MC3 LINE L1 -517 7268 6405 2196 181 54 10 chr13 61726100 61726510 -58018388 - MSTA LTR MaLR 0 428 1 6767 211 119 59 chr13 61726510 61727167 -58017731 - L1MC3 LINE L1 -1380 6405 5428 922 168 48 6 chr13 61727168 61727335 -58017563 + MER58A DNA MER1_type 45 218 -6 28 48 0 0 chr13 61727431 61727473 -58017425 + AT_rich Low_complexity Low_complexity 1 42 0 339 202 0 0 chr13 61727547 61727631 -58017267 + (TA)n Simple_repeat Simple_repeat 1 84 0 302 311 0 0 chr13 61727636 61727726 -58017172 - L1MC4 LINE L1 -1339 6703 6614 * 312 294 0 22 chr13 61727696 61727788 -58017110 - L1MC4 LINE L1 -1339 6703 6614 326 266 0 43 chr13 61727796 61727890 -58017008 - L1MC4 LINE L1 -1339 6703 6614 320 286 0 22 chr13 61727873 61727964 -58016934 - L1MC4 LINE L1 -1340 6702 6614 * 219 289 133 0 chr13 61728943 61729026 -58015872 + L3b LINE CR1 1288 1381 -202 180 182 0 0 chr13 61729053 61729097 -58015801 + T-rich Low_complexity Low_complexity 2 45 0 195 313 146 7 chr13 61729501 61729645 -58015253 - MIR SINE MIR -1 261 98 22 35 0 0 chr13 61729790 61729819 -58015079 + AT_rich Low_complexity Low_complexity 1 29 0 418 362 21 16 chr13 61730513 61730701 -58014197 + MIR SINE MIR 62 250 -12 530 211 88 0 chr13 61730720 61730834 -58014064 - FLAM_C SINE Alu -19 124 1 35 24 0 0 chr13 61730951 61730993 -58013905 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr13 61731519 61731546 -58013352 + AT_rich Low_complexity Low_complexity 1 27 0 254 333 58 10 chr13 61731707 61731914 -58012984 + L1ME LINE L1 5471 5687 -434 1146 179 13 9 chr13 61731959 61732183 -58012715 - L1PA16 LINE L1 0 6166 5942 4516 182 33 10 chr13 61732203 61733540 -58011358 - L1PA16 LINE L1 -9 6157 4783 2821 161 14 8 chr13 61733543 61734040 -58010858 - L1PA16 LINE L1 -230 5936 5437 187 250 31 0 chr13 61734351 61734415 -58010483 + MIR SINE MIR 153 218 -44 24 77 0 0 chr13 61734731 61734783 -58010115 + AT_rich Low_complexity Low_complexity 1 52 0 1923 152 0 19 chr13 61735057 61735373 -58009525 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr13 61736034 61736055 -58008843 + AT_rich Low_complexity Low_complexity 1 21 0 2444 158 10 12 chr13 61736125 61736542 -58008356 + MSTA LTR MaLR 1 416 -12 2388 80 3 0 chr13 61736722 61737021 -58007877 - AluSp SINE Alu -13 300 1 313 323 11 43 chr13 61737338 61737599 -58007299 + LTR16A LTR ERVL 163 457 0 536 362 45 25 chr13 61737633 61738034 -58006864 + HERV16 LTR ERVL 37 445 -4551 796 194 0 0 chr13 61738364 61738498 -58006400 + FLAM_C SINE Alu 1 134 -9 189 136 45 0 chr13 61738519 61738585 -58006313 + (TA)n Simple_repeat Simple_repeat 1 69 0 854 214 13 0 chr13 61738586 61738745 -58006153 + AluJb SINE Alu 132 292 -20 415 332 62 12 chr13 61738957 61739213 -58005685 + HERV16 LTR ERVL 1027 1295 -3701 13372 201 23 21 chr13 61739262 61744298 -58000600 + L1P5 LINE L1 1392 6508 -359 375 23 0 0 chr13 61744306 61744350 -58000548 + (CA)n Simple_repeat Simple_repeat 2 45 0 24 32 0 0 chr13 61744553 61744584 -58000314 + AT_rich Low_complexity Low_complexity 1 31 0 302 0 26 0 chr13 61744782 61744820 -58000078 + (TG)n Simple_repeat Simple_repeat 2 40 0 1625 161 3 44 chr13 61744922 61745220 -57999678 - AluJo SINE Alu -26 286 1 1354 259 54 50 chr13 61745539 61746079 -57998819 + MLT1F LTR MaLR 1 542 0 2676 23 0 3 chr13 61746970 61747275 -57997623 - AluY SINE Alu -7 304 1 331 141 47 0 chr13 61747820 61747884 -57997014 - L1MB7 LINE L1 0 6184 6118 23 0 0 0 chr13 61747979 61748002 -57996896 + AT_rich Low_complexity Low_complexity 1 23 0 2882 290 120 38 chr13 61749071 61750670 -57994228 + L2 LINE L2 646 2375 -939 828 181 0 0 chr13 61750675 61750841 -57994057 + GA-rich Low_complexity Low_complexity 1 166 0 205 258 43 54 chr13 61750893 61750986 -57993912 + L2 LINE L2 2398 2489 -825 513 45 0 0 chr13 61751003 61751069 -57993829 - L1P LINE L1 -777 5377 5312 4887 102 7 0 chr13 61751072 61751780 -57993118 + L1PA8 LINE L1 5456 6168 -4 667 332 77 48 chr13 61751814 61752569 -57992329 + L2 LINE L2 2508 3302 -11 300 304 101 65 chr13 61752601 61752769 -57992129 + MIR SINE MIR 33 206 -56 1816 159 7 7 chr13 61753886 61754181 -57990717 - AluSq SINE Alu -18 295 1 22 35 0 0 chr13 61754963 61754992 -57989906 + AT_rich Low_complexity Low_complexity 1 29 0 895 191 82 14 chr13 61756580 61756800 -57988098 + L1MB8 LINE L1 5931 6165 -13 220 242 0 65 chr13 61757135 61757197 -57987701 + MIR SINE MIR 78 135 -127 337 333 30 12 chr13 61757636 61757801 -57987097 - MIR SINE MIR -94 168 1 530 246 78 0 chr13 61757868 61758010 -57986888 + LTR65 LTR ERV1 10 162 -507 283 289 24 0 chr13 61758248 61758331 -57986567 + LTR65 LTR ERV1 561 645 -24 344 327 57 0 chr13 61758438 61758597 -57986301 + MIR SINE MIR 92 259 -3 1727 140 61 0 chr13 61759306 61759584 -57985314 - AluSq SINE Alu -18 295 1 333 239 74 98 chr13 61759786 61759949 -57984949 - MIR SINE MIR -11 251 93 22 0 0 0 chr13 61760491 61760513 -57984385 + AT_rich Low_complexity Low_complexity 1 22 0 697 113 8 8 chr13 61761111 61761244 -57983654 + (GGAA)n Simple_repeat Simple_repeat 2 134 0 1420 167 38 3 chr13 61761872 61762159 -57982739 + L1PB1 LINE L1 5854 6150 -1 256 319 14 0 chr13 61762225 61762294 -57982604 - L2 LINE L2 -1387 1927 1858 21 36 0 0 chr13 61762657 61762685 -57982213 + AT_rich Low_complexity Low_complexity 1 28 0 1419 325 42 8 chr13 61762694 61763221 -57981677 + HERV16 LTR ERVL 1689 2233 -2763 339 324 196 10 chr13 61763679 61763883 -57981015 + LTR16A LTR ERVL 192 433 -17 22 35 0 0 chr13 61763971 61764000 -57980898 + AT_rich Low_complexity Low_complexity 1 29 0 189 276 86 0 chr13 61764656 61764714 -57980184 + MIR SINE MIR 121 183 -79 387 0 0 0 chr13 61765957 61766000 -57978898 + (TG)n Simple_repeat Simple_repeat 2 44 0 284 221 240 0 chr13 61766323 61766427 -57978471 + MIR SINE MIR 134 262 0 1029 207 28 14 chr13 61766836 61767049 -57977849 - MER20 DNA MER1_type 0 219 4 25 0 0 0 chr13 61767897 61767922 -57976976 + AT_rich Low_complexity Low_complexity 1 25 0 217 346 79 20 chr13 61768789 61768890 -57976008 + L2 LINE L2 3156 3262 -10 238 175 18 18 chr13 61769387 61769444 -57975454 + T-rich Low_complexity Low_complexity 6 62 0 315 0 0 0 chr13 61769798 61769833 -57975065 + (CA)n Simple_repeat Simple_repeat 2 36 0 35 0 0 0 chr13 61770121 61770156 -57974742 + AT_rich Low_complexity Low_complexity 1 35 0 762 179 26 12 chr13 61770341 61770516 -57974382 + L1MA7 LINE L1 6052 6161 -28 1354 298 97 41 chr13 61770691 61771751 -57973147 - L1MEc LINE L1 -5234 1162 43 275 256 55 82 chr13 61773473 61773692 -57971206 + MER112 DNA MER1_type 1 213 -47 1628 161 36 4 chr13 61774377 61774657 -57970241 - AluSx SINE Alu -21 291 3 26 50 0 0 chr13 61774773 61774813 -57970085 + AT_rich Low_complexity Low_complexity 1 40 0 1229 253 40 48 chr13 61774989 61775388 -57969510 - MSTD LTR MaLR 0 396 1 28 91 0 0 chr13 61775404 61775481 -57969417 + AT_rich Low_complexity Low_complexity 1 77 0 359 315 31 8 chr13 61775535 61775662 -57969236 + LTR16A LTR ERVL 8 137 -313 645 247 32 16 chr13 61775993 61776183 -57968715 + MLT1H LTR MaLR 12 204 -345 41 66 0 0 chr13 61776248 61776324 -57968574 + AT_rich Low_complexity Low_complexity 1 76 0 1726 194 0 0 chr13 61776393 61776687 -57968211 - AluJb SINE Alu -18 294 1 23 33 0 0 chr13 61776710 61776740 -57968158 + AT_rich Low_complexity Low_complexity 1 30 0 333 301 117 35 chr13 61776833 61777115 -57967783 + L1 LINE L1 4438 4742 -1404 231 226 0 19 chr13 61779344 61779397 -57965501 - L2 LINE L2 0 3313 3262 537 198 12 56 chr13 61779533 61779695 -57965203 + MLT2C2 LTR ERVL 84 238 -226 204 163 0 0 chr13 61779754 61779797 -57965101 + (TG)n Simple_repeat Simple_repeat 2 44 0 219 131 16 33 chr13 61779887 61779948 -57964950 + (TA)n Simple_repeat Simple_repeat 2 61 0 645 277 65 16 chr13 61780002 61780186 -57964712 - MER82 DNA MER2_type -3 650 458 7364 223 83 7 chr13 61780668 61783721 -57961177 + L1PA16 LINE L1 2824 6154 0 441 196 49 0 chr13 61783939 61784041 -57960857 - MER3 DNA MER1_type -3 206 100 599 72 0 0 chr13 61784936 61785019 -57959879 + L1PA8 LINE L1 6090 6172 0 238 178 53 20 chr13 61785260 61785412 -57959486 + (TA)n Simple_repeat Simple_repeat 2 158 0 344 259 58 120 chr13 61785713 61786038 -57958860 - MER110A LTR ERV1 -163 305 1 3468 314 77 65 chr13 61786145 61788228 -57956670 - MER110A-int LTR ERV1 -24 4623 2517 927 275 25 12 chr13 61788330 61788570 -57956328 + MER21B LTR ERV1 43 285 -578 * 2327 156 15 38 chr13 61788560 61789036 -57955862 - LTR60 LTR ERV1 -121 465 1 999 302 60 66 chr13 61789038 61789888 -57955010 - MER110A-int LTR ERV1 -2508 2139 1295 26 30 0 0 chr13 61790043 61790076 -57954822 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 61790907 61790944 -57953954 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 61791011 61791032 -57953866 + AT_rich Low_complexity Low_complexity 1 21 0 1854 77 27 109 chr13 61791117 61791343 -57953555 - AluYb8 SINE Alu 0 318 128 2220 0 0 0 chr13 61791343 61791591 -57953307 - L1PA2 LINE L1 -2 6153 5906 1854 77 27 109 chr13 61791591 61791702 -57953196 - AluYb8 SINE Alu -190 128 9 1744 118 14 24 chr13 61791955 61792263 -57952635 - AluSx SINE Alu 0 305 1 521 238 52 23 chr13 61792758 61793012 -57951886 + LTR37B LTR ERV1 208 426 0 2130 135 24 29 chr13 61794554 61794931 -57949967 + THE1C LTR MaLR 1 375 0 1374 212 103 29 chr13 61795290 61795668 -57949230 - LTR52 LTR ERVL -6 415 10 215 313 137 15 chr13 61795759 61795890 -57949008 + MIR SINE MIR 42 188 -74 224 303 146 0 chr13 61796666 61796755 -57948143 + MIR SINE MIR 161 262 0 225 0 0 0 chr13 61797721 61797746 -57947152 + (TATG)n Simple_repeat Simple_repeat 4 28 0 247 113 38 0 chr13 61797746 61797799 -57947099 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1794 240 62 18 chr13 61797812 61798300 -57946598 + LTR40a LTR ERVL 3 511 -8 22 0 0 0 chr13 61799278 61799300 -57945598 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr13 61799582 61799619 -57945279 + AT_rich Low_complexity Low_complexity 1 37 0 266 359 61 52 chr13 61799733 61799964 -57944934 + L2 LINE L2 2995 3227 -45 2369 75 0 10 chr13 61800158 61800466 -57944432 + AluY SINE Alu 1 305 -6 2070 148 20 11 chr13 61800994 61801346 -57943552 + THE1A LTR MaLR 1 355 0 11397 103 4 1 chr13 61801346 61802920 -57941978 + THE1A-int LTR MaLR 1 1580 0 2280 127 6 11 chr13 61802922 61803277 -57941621 + THE1A LTR MaLR 3 355 0 1220 105 6 0 chr13 61803281 61803452 -57941446 - THE1-int LTR MaLR -477 1103 932 1175 308 118 14 chr13 61804187 61804377 -57940521 + MLT1G LTR MaLR 1 170 -420 1428 153 8 0 chr13 61804377 61804631 -57940267 - L1MA4 LINE L1 0 6300 6045 1175 308 118 14 chr13 61804631 61804950 -57939948 + MLT1G LTR MaLR 170 563 -27 32 0 0 0 chr13 61805153 61805185 -57939713 + AT_rich Low_complexity Low_complexity 1 32 0 285 326 37 15 chr13 61805730 61805865 -57939033 + L1MEc LINE L1 131 268 -6128 * 3085 142 21 0 chr13 61805861 61806462 -57938436 + L1P4 LINE L1 5146 5755 -406 595 302 100 26 chr13 61806461 61806802 -57938096 + L1MEc LINE L1 271 636 -5760 * 278 239 0 45 chr13 61806803 61806891 -57938007 + L1MEc LINE L1 773 856 -5540 498 291 166 12 chr13 61806891 61807217 -57937681 + L1ME1 LINE L1 5743 6118 -48 343 233 108 0 chr13 61807140 61807260 -57937638 + L1MA10 LINE L1 6200 6332 -2 * 25 31 0 0 chr13 61807342 61807374 -57937524 + AT_rich Low_complexity Low_complexity 1 32 0 220 70 47 0 chr13 61808798 61808841 -57936057 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr13 61809925 61809953 -57934945 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 61810874 61810901 -57933997 + AT_rich Low_complexity Low_complexity 1 27 0 303 85 0 0 chr13 61811181 61811228 -57933670 + (TG)n Simple_repeat Simple_repeat 1 47 0 919 261 43 14 chr13 61811256 61811532 -57933366 - MLT1B LTR MaLR -99 291 8 793 268 124 31 chr13 61811874 61812229 -57932669 + L3 LINE CR1 369 756 -821 24 0 0 0 chr13 61812509 61812533 -57932365 + AT_rich Low_complexity Low_complexity 1 24 0 471 320 80 45 chr13 61813591 61814194 -57930704 - L1ME3A LINE L1 -223 5930 5307 1490 225 26 0 chr13 61814275 61814622 -57930276 - L1MD3 LINE L1 0 7995 7640 2628 231 21 16 chr13 61814622 61815297 -57929601 + L1MA8 LINE L1 4707 5384 -762 2208 197 49 130 chr13 61815422 61816378 -57928520 + L1MA8 LINE L1 5396 6274 -17 483 344 84 27 chr13 61816404 61816915 -57927983 - L1ME3A LINE L1 -2238 3891 3352 24 0 0 0 chr13 61817042 61817066 -57927832 + AT_rich Low_complexity Low_complexity 1 24 0 2853 160 30 12 chr13 61817073 61817572 -57927326 - Tigger1 DNA MER2_type 0 2418 1911 1394 212 17 13 chr13 61817555 61817857 -57927041 - Tigger1 DNA MER2_type -2115 303 1 * 303 310 116 32 chr13 61818059 61818343 -57926555 - L1ME3A LINE L1 -3235 2894 2587 1159 296 144 22 chr13 61818491 61819260 -57925638 - L1ME3A LINE L1 -2 6168 5306 24 85 0 0 chr13 61819461 61819520 -57925378 + AT_rich Low_complexity Low_complexity 1 59 0 253 289 39 92 chr13 61820195 61820413 -57924485 - L1ME3A LINE L1 -4862 1257 1062 2345 49 7 0 chr13 61820413 61820699 -57924199 - AluY SINE Alu -23 288 1 253 289 39 92 chr13 61820699 61820816 -57924082 - L1ME3A LINE L1 -5057 1062 940 518 345 59 49 chr13 61821072 61821664 -57923234 - L1ME3A LINE L1 -5451 668 71 182 325 185 20 chr13 61821923 61822074 -57922824 - L3 LINE CR1 -58 1519 1344 468 260 64 20 chr13 61822127 61822331 -57922567 - L1MC5 LINE L1 -59 7902 7690 180 111 0 0 chr13 61822393 61822420 -57922478 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 203 290 14 0 chr13 61823286 61823355 -57921543 + (TA)n Simple_repeat Simple_repeat 1 70 0 225 202 0 109 chr13 61823359 61823478 -57921420 + L1MC4 LINE L1 6613 6718 -1324 2291 38 0 0 chr13 61823764 61824031 -57920867 - AluY SINE Alu -6 305 39 1283 225 124 19 chr13 61925829 61926362 -57818536 - Charlie2 DNA MER1_type 0 2862 2274 1861 187 30 7 chr13 61926365 61926798 -57818100 - L1MA4 LINE L1 0 6300 5858 21 0 0 0 chr13 61927429 61927450 -57817448 + AT_rich Low_complexity Low_complexity 1 21 0 8047 218 53 18 chr13 61927895 61930308 -57814590 + L1PA16 LINE L1 2982 5491 -675 2111 124 0 0 chr13 61930308 61930606 -57814292 + AluSc SINE Alu 1 298 -11 8047 218 53 18 chr13 61930606 61930731 -57814167 + L1PA16 LINE L1 5491 5610 -556 588 210 0 8 chr13 61930754 61930873 -57814025 + L1PA16 LINE L1 5978 6095 -71 818 86 6 123 chr13 61930891 61931058 -57813840 + L1PA8A LINE L1 5605 5746 -415 2236 160 24 10 chr13 61931159 61931571 -57813327 + L1PA16 LINE L1 5740 6157 -9 849 261 96 57 chr13 61931768 61932102 -57812796 + MLT1A2 LTR MaLR 17 363 -11 1331 161 110 51 chr13 61932252 61932606 -57812292 - THE1C LTR MaLR 0 375 1 360 26 26 51 chr13 61932610 61932688 -57812210 + (TA)n Simple_repeat Simple_repeat 1 76 0 189 326 40 91 chr13 61932921 61933096 -57811802 - L2 LINE L2 -568 2746 2581 31 26 0 0 chr13 61933254 61933292 -57811606 + AT_rich Low_complexity Low_complexity 1 38 0 501 305 174 44 chr13 61933507 61933960 -57810938 - MLT1G LTR MaLR 0 590 79 3797 253 108 22 chr13 61934013 61934246 -57810652 + L1ME1 LINE L1 3110 3322 -2824 1598 156 49 0 chr13 61934246 61934554 -57810344 + L1MA9 LINE L1 5990 6312 0 3797 253 108 22 chr13 61934554 61936120 -57808778 + L1ME1 LINE L1 3322 5063 -1083 2053 265 39 30 chr13 61936235 61937168 -57807730 + L1ME1 LINE L1 5062 6165 -1 433 272 63 31 chr13 61937335 61937526 -57807372 - MLT1D LTR MaLR -4 501 305 286 164 119 0 chr13 61937963 61938030 -57806868 - MIR SINE MIR 0 262 188 23 0 0 0 chr13 61938777 61938800 -57806098 + AT_rich Low_complexity Low_complexity 1 23 0 2955 152 39 42 chr13 61938822 61939565 -57805333 - L1MA7 LINE L1 -11 6280 5434 476 184 10 10 chr13 61939567 61939670 -57805228 - L1MA7 LINE L1 -1123 5023 4921 * 787 180 7 0 chr13 61939658 61939797 -57805101 - L1MA7 LINE L1 -2263 3883 3744 8622 69 3 11 chr13 61939918 61941502 -57803396 - L1P2 LINE L1 -377 5777 4206 361 311 157 65 chr13 61941685 61942036 -57802862 + MLT1E2 LTR MaLR 1 383 -241 1926 100 4 0 chr13 61942087 61942347 -57802551 + AluSx SINE Alu 35 295 -17 22 35 0 0 chr13 61942614 61942643 -57802255 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr13 61942733 61942766 -57802132 + AT_rich Low_complexity Low_complexity 1 33 0 837 374 72 30 chr13 61943151 61944149 -57800749 - L2 LINE L2 -590 2724 1685 266 320 72 8 chr13 61944807 61944932 -57799966 - L2 LINE L2 -1385 1929 1797 1637 191 12 6 chr13 61945461 61945797 -57799101 - L1PB4 LINE L1 0 6156 5819 829 194 0 0 chr13 61945798 61945958 -57798940 + L1PB4 LINE L1 5665 5824 -332 1002 145 0 0 chr13 61946083 61946228 -57798670 + AluSq SINE Alu 35 179 -134 1236 187 85 0 chr13 61946259 61946544 -57798354 - L1PB4 LINE L1 -365 5801 5475 225 349 24 32 chr13 61947127 61947253 -57797645 + L2 LINE L2 3170 3294 -19 186 233 0 23 chr13 61947222 61947265 -57797633 + MIR SINE MIR 219 260 -2 * 606 257 13 20 chr13 61947370 61947522 -57797376 - MIR SINE MIR -21 241 91 592 242 186 4 chr13 61947599 61947830 -57797068 - MLT1G LTR MaLR -306 284 12 258 307 20 7 chr13 61948140 61948290 -57796608 + (TA)n Simple_repeat Simple_repeat 1 152 0 28 0 0 0 chr13 61948378 61948406 -57796492 + AT_rich Low_complexity Low_complexity 1 28 0 * 270 217 0 0 chr13 61948393 61948453 -57796445 - L1ME LINE L1 -298 5823 5764 21 0 0 0 chr13 61948462 61948483 -57796415 + AT_rich Low_complexity Low_complexity 1 21 0 1762 199 46 6 chr13 61948535 61948901 -57795997 - L1PB4 LINE L1 -13 6143 5763 419 275 30 43 chr13 61949066 61949299 -57795599 - L1ME LINE L1 -5325 745 516 2702 224 72 27 chr13 61949308 61949790 -57795108 + L1ME1 LINE L1 4996 5455 -879 2862 6 0 0 chr13 61949790 61950103 -57794795 + AluYb8 SINE Alu 1 313 -5 2702 224 72 27 chr13 61950103 61950763 -57794135 + L1ME1 LINE L1 5455 6333 -1 21 0 0 0 chr13 61950783 61950804 -57794094 + AT_rich Low_complexity Low_complexity 1 21 0 3248 171 25 28 chr13 61951299 61951491 -57793407 + L1MA3 LINE L1 5596 5787 -518 2334 87 3 0 chr13 61951491 61951801 -57793097 + AluY SINE Alu 1 311 0 3248 171 25 28 chr13 61951801 61952320 -57792578 + L1MA3 LINE L1 5787 6305 0 42 20 0 0 chr13 61952320 61952369 -57792529 + AT_rich Low_complexity Low_complexity 1 49 0 992 180 8 100 chr13 61953314 61953575 -57791323 + MSTB LTR MaLR 2 238 -188 3123 177 66 88 chr13 61953680 61954517 -57790381 - MER52A LTR ERV1 -937 818 1 280 83 0 0 chr13 61954830 61954866 -57790032 - U2 snRNA snRNA -152 36 1 543 289 140 43 chr13 61955673 61956601 -57788297 - L1MEc LINE L1 -4615 1781 764 306 302 86 7 chr13 61957349 61957488 -57787410 + L1M4 LINE L1 4884 5033 -1113 26 50 0 0 chr13 61957513 61957553 -57787345 + AT_rich Low_complexity Low_complexity 1 40 0 270 238 76 52 chr13 61957553 61957763 -57787135 + L1M4 LINE L1 5060 5274 -872 581 298 90 30 chr13 61957831 61958162 -57786736 - L1ME LINE L1 -516 5646 5296 406 286 36 42 chr13 61960863 61961031 -57783867 - L2 LINE L2 -1 3312 3146 314 292 25 8 chr13 61961138 61961258 -57783640 - MLT1I LTR MaLR 0 409 288 188 321 0 47 chr13 61961509 61961615 -57783283 - L2 LINE L2 -1271 2043 1943 209 302 116 108 chr13 61961764 61962301 -57782597 - L2 LINE L2 -1403 1911 1371 2301 236 19 4 chr13 61964213 61964695 -57780203 - MER70B LTR ERVL 0 578 90 529 283 64 27 chr13 61964668 61964855 -57780043 - MER70A LTR ERVL -278 194 1 * 3303 137 16 38 chr13 61965808 61966421 -57778477 - MER4A LTR ERV1 0 600 1 998 218 59 50 chr13 61966426 61966747 -57778151 + L1MB8 LINE L1 5854 6177 -1 1902 148 24 35 chr13 61967056 61967433 -57777465 + THE1C LTR MaLR 3 375 0 25 31 0 0 chr13 61967762 61967794 -57777104 + AT_rich Low_complexity Low_complexity 1 32 0 1167 161 21 0 chr13 61968057 61968249 -57776649 + MER7A DNA MER2_type 1 194 -152 412 307 20 20 chr13 61968260 61968413 -57776485 + MIR SINE MIR 54 206 -56 252 0 0 0 chr13 61968458 61968486 -57776412 + (TTA)n Simple_repeat Simple_repeat 2 29 0 438 296 54 65 chr13 61968501 61968795 -57776103 - L1ME LINE L1 -388 5774 5484 29 28 0 0 chr13 61968911 61968947 -57775951 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr13 61969082 61969115 -57775783 + AT_rich Low_complexity Low_complexity 1 33 0 452 369 106 17 chr13 61970135 61970831 -57774067 + L2 LINE L2 2469 3222 -91 213 39 0 0 chr13 61970912 61970938 -57773960 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 2549 249 106 45 chr13 61971645 61972253 -57772645 - L1MCb LINE L1 -3183 3381 2812 1733 181 40 3 chr13 61972253 61972601 -57772297 - MER46B DNA MER2_type 0 236 1 2549 249 106 45 chr13 61972601 61973269 -57771629 - L1MCb LINE L1 -3752 2812 2186 2012 118 31 3 chr13 61973269 61973557 -57771341 + AluSx SINE Alu 1 296 -16 2549 249 106 45 chr13 61973557 61974703 -57770195 - L1MCb LINE L1 -4378 2186 698 472 279 39 64 chr13 61974733 61974966 -57769932 - L1MCb LINE L1 -6199 365 139 32 26 0 0 chr13 61975259 61975298 -57769600 + AT_rich Low_complexity Low_complexity 1 39 0 973 267 75 35 chr13 61975318 61975692 -57769206 + MSTD LTR MaLR 3 391 -5 30 27 0 0 chr13 61976020 61976057 -57768841 + AT_rich Low_complexity Low_complexity 1 37 0 244 330 230 5 chr13 61976160 61976351 -57768547 - L2 LINE L2 -1 3312 3079 679 248 190 35 chr13 61976495 61976785 -57768113 - L2 LINE L2 -440 2874 2540 429 20 0 0 chr13 61976786 61976836 -57768062 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 216 298 0 24 chr13 61976836 61976920 -57767978 - L2 LINE L2 -1105 2209 2128 272 301 37 37 chr13 61976921 61977057 -57767841 - L2 LINE L2 -1507 1807 1672 1949 75 0 126 chr13 61977299 61977617 -57767281 - AluSc SINE Alu -31 278 1 514 273 94 88 chr13 61978025 61978501 -57766397 - MER20B DNA MER1_type -273 510 32 407 339 16 0 chr13 61978784 61978905 -57765993 + L2 LINE L2 2931 3053 -219 279 336 125 52 chr13 61980933 61981573 -57763325 - L2 LINE L2 -688 2626 1940 954 232 168 2 chr13 61981723 61981990 -57762908 + MER67D LTR ERV1 155 436 -78 234 164 36 0 chr13 61982070 61982144 -57762754 + A-rich Low_complexity Low_complexity 1 76 0 222 359 76 36 chr13 61982255 61982531 -57762367 - L2 LINE L2 -2157 1157 871 1901 152 7 7 chr13 61982945 61983283 -57761615 - AluSx SINE Alu 0 340 3 3075 110 10 37 chr13 61983426 61983916 -57760982 - L1PA16 LINE L1 -367 5799 5323 1875 161 58 8 chr13 61983917 61984277 -57760621 + L1PA16 LINE L1 5789 6166 0 328 182 0 0 chr13 61984507 61984573 -57760325 - MER2 DNA MER2_type -150 195 130 1185 97 40 57 chr13 61984737 61984983 -57759915 + L1PA10 LINE L1 5946 6168 0 731 273 55 22 chr13 61984994 61985265 -57759633 + L1MB7 LINE L1 5829 6108 -76 3742 231 52 29 chr13 61985560 61986570 -57758328 + MER45B DNA AcHobo 2 1035 -5 1446 149 127 99 chr13 61987044 61987577 -57757321 - LTR18B LTR ERVL -164 450 1 839 236 15 20 chr13 61987577 61987772 -57757126 - MLT2B3 LTR ERVL -290 264 71 356 110 14 82 chr13 61987866 61987939 -57756959 - MLT2B3 LTR ERVL -486 68 1 443 279 100 5 chr13 61987967 61988157 -57756741 + L2 LINE L2 3102 3309 -4 1647 162 54 24 chr13 61988345 61988678 -57756220 - MER61A LTR ERV1 0 343 1 25496 85 41 18 chr13 61988678 61989013 -57755885 - MER61A-int LTR ERV1 0 5217 4891 201 39 0 0 chr13 61989013 61989039 -57755859 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 25496 85 41 18 chr13 61989039 61992426 -57752472 - MER61A-int LTR ERV1 -326 4891 1412 1872 182 61 71 chr13 61992463 61993115 -57751783 - MER61A-int LTR ERV1 -4483 734 1 1297 145 129 50 chr13 61993115 61993433 -57751465 - MER61A LTR ERV1 0 343 1 390 273 134 27 chr13 61993435 61993622 -57751276 - MLT1I LTR MaLR -98 311 105 4847 87 11 0 chr13 61993624 61994277 -57750621 + PABL_A LTR ERV1 1 660 0 23 33 0 0 chr13 61994469 61994499 -57750399 + AT_rich Low_complexity Low_complexity 1 30 0 299 351 137 6 chr13 61995091 61995259 -57749639 + MIR SINE MIR 63 252 -10 29 70 0 0 chr13 61995500 61995557 -57749341 + AT_rich Low_complexity Low_complexity 1 57 0 1988 88 56 11 chr13 61995566 61995851 -57749047 + AluSq SINE Alu 1 298 -15 699 118 0 17 chr13 61996681 61996800 -57748098 + L1P LINE L1 5098 5214 -932 21 36 0 0 chr13 61997249 61997277 -57747621 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr13 61997323 61997369 -57747529 + AT_rich Low_complexity Low_complexity 1 46 0 2190 119 0 0 chr13 61997666 61997961 -57746937 + AluSc SINE Alu 1 295 -14 328 366 24 0 chr13 61998222 61998386 -57746512 - L2 LINE L2 -1412 1902 1735 2244 150 5 14 chr13 61998401 61998768 -57746130 + THE1B LTR MaLR 1 364 0 9805 107 83 1 chr13 61998768 62000216 -57744682 + THE1B-int LTR MaLR 1 1567 -13 2002 152 13 43 chr13 62000218 62000593 -57744305 + THE1B LTR MaLR 1 364 0 962 347 65 16 chr13 62000618 62001065 -57743833 - L2 LINE L2 -1623 1691 1223 1598 216 0 0 chr13 62001108 62001409 -57743489 + AluJo SINE Alu 1 301 -11 10394 245 40 31 chr13 62002439 62007346 -57737552 + L1MA6 LINE L1 1534 6174 -993 751 170 164 6 chr13 62007350 62007509 -57737389 + FRAM SINE Alu 1 176 0 3105 166 32 9 chr13 62007513 62007579 -57737319 + L1MA6 LINE L1 6188 6251 -1061 1273 197 45 84 chr13 62007579 62007959 -57736939 + MLT1A1 LTR MaLR 1 365 0 3105 166 32 9 chr13 62007959 62008568 -57736330 + L1MA6 LINE L1 6251 6879 -433 700 69 9 26 chr13 62008580 62008696 -57736202 - L1M LINE L1 -920 5392 5279 2074 136 34 29 chr13 62008697 62009108 -57735790 + L1MA6 LINE L1 6909 7321 0 251 191 29 48 chr13 62009874 62009979 -57734919 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 859 182 25 5 chr13 62010003 62010284 -57734614 - MER2 DNA MER2_type -2 343 3 21 71 0 0 chr13 62010845 62010887 -57734011 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr13 62011459 62011481 -57733417 + AT_rich Low_complexity Low_complexity 1 22 0 2091 145 114 5 chr13 62011558 62011944 -57732954 + MSTA LTR MaLR 1 428 0 698 285 40 0 chr13 62011944 62012144 -57732754 - MIR SINE MIR -43 219 12 616 306 177 19 chr13 62012165 62012475 -57732423 + MLT1E LTR MaLR 227 585 -8 268 288 60 111 chr13 62012574 62012942 -57731956 - MLT1F-int LTR MaLR 0 1371 1023 726 225 26 82 chr13 62013241 62013472 -57731426 - MER20 DNA MER1_type 0 219 2 605 308 26 36 chr13 62013768 62014070 -57730828 - MLT1F-int LTR MaLR -765 606 308 1150 261 122 26 chr13 62014234 62014724 -57730174 - MLT1F LTR MaLR -1 541 5 2438 190 38 8 chr13 62015113 62015618 -57729280 + L1MB1 LINE L1 5637 6156 -33 607 245 106 7 chr13 62019013 62019295 -57725603 - L1M4c LINE L1 -3972 2674 2365 1575 179 0 50 chr13 62019298 62019599 -57725299 + AluJb SINE Alu 1 286 -26 575 323 22 4 chr13 62019624 62019856 -57725042 - L1M4c LINE L1 -4566 2080 1845 569 230 13 40 chr13 62019857 62020009 -57724889 + MLT2D LTR ERVL 66 213 -201 2256 127 11 24 chr13 62020010 62020379 -57724519 + THE1B LTR MaLR 1 364 0 10125 131 35 2 chr13 62020379 62021903 -57722995 + THE1B-int LTR MaLR 1 1574 -6 2149 118 21 43 chr13 62021909 62022281 -57722617 + THE1B LTR MaLR 1 364 0 341 191 0 29 chr13 62022328 62022396 -57722502 + ERVL LTR ERVL 323 388 -5376 474 248 36 17 chr13 62022396 62022543 -57722355 + MLT2D LTR ERVL 249 464 0 26589 201 36 49 chr13 62022547 62026624 -57718274 + ERVL-D-D LTR ERVL 1 3977 -1787 1575 174 7 24 chr13 62026624 62026917 -57717981 + AluJo SINE Alu 7 294 -18 26589 201 36 49 chr13 62026917 62028682 -57716216 + ERVL-D-D LTR ERVL 3977 5764 0 809 169 79 11 chr13 62028526 62028704 -57716194 + Ricksha DNA DNA 186 375 -2871 * 1017 229 45 92 chr13 62028704 62029052 -57715846 + MLT2D LTR ERVL 86 508 -7 4635 258 66 39 chr13 62029052 62030850 -57714048 - L1M4c LINE L1 -4806 1840 23 277 283 20 30 chr13 62031874 62031973 -57712925 + MLT1J LTR MaLR 18 115 -396 21 71 0 0 chr13 62032007 62032049 -57712849 + AT_rich Low_complexity Low_complexity 1 42 0 280 395 100 32 chr13 62032177 62032618 -57712280 + L2 LINE L2 2290 2760 -554 257 252 103 37 chr13 62032697 62032804 -57712094 + MLT1H1 LTR MaLR 436 549 -6 22 56 0 0 chr13 62032927 62032963 -57711935 + AT_rich Low_complexity Low_complexity 1 36 0 5347 145 36 0 chr13 62033580 62034239 -57710659 - L1PA16 LINE L1 -9 6157 5449 218 32 32 0 chr13 62034239 62034270 -57710628 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5347 145 36 0 chr13 62034270 62034556 -57710342 - L1PA16 LINE L1 -717 5449 5175 1871 181 17 0 chr13 62034955 62035308 -57709590 - L1PA16 LINE L1 -986 5160 4802 496 90 0 0 chr13 62035306 62035373 -57709525 + L1P LINE L1 5163 5229 -917 * 21 0 0 0 chr13 62035683 62035704 -57709194 + AT_rich Low_complexity Low_complexity 1 21 0 623 295 18 0 chr13 62035736 62035902 -57708996 + MER45A DNA AcHobo 10 178 0 252 290 56 0 chr13 62035904 62036011 -57708887 + L1ME LINE L1 5760 5872 -298 4350 62 9 0 chr13 62038041 62038605 -57706293 - L1PA7 LINE L1 -5 6149 5581 5116 168 35 47 chr13 62038911 62039501 -57705397 + L1MA9 LINE L1 4701 5296 -1016 414 0 0 0 chr13 62039501 62039547 -57705351 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1654 220 61 3 chr13 62039549 62039894 -57705004 - MLT1A1 LTR MaLR 0 365 1 5116 168 35 47 chr13 62039894 62040935 -57703963 + L1MA9 LINE L1 5297 6311 -1 1988 149 22 33 chr13 62041284 62041652 -57703246 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr13 62042170 62042192 -57702706 + AT_rich Low_complexity Low_complexity 1 22 0 38 93 0 0 chr13 62042926 62043034 -57701864 + AT_rich Low_complexity Low_complexity 1 108 0 212 239 109 76 chr13 62043034 62043126 -57701772 - MIR3 SINE MIR -25 183 89 2111 67 0 95 chr13 62044075 62044402 -57700496 + AluSq SINE Alu 1 296 -17 417 39 0 0 chr13 62044403 62044454 -57700444 + (CA)n Simple_repeat Simple_repeat 2 52 0 927 128 34 0 chr13 62044454 62044602 -57700296 + AluSg/x SINE Alu 133 285 -27 431 221 8 0 chr13 62044602 62044724 -57700174 + (TA)n Simple_repeat Simple_repeat 2 124 0 31 44 0 0 chr13 62044857 62044902 -57699996 + AT_rich Low_complexity Low_complexity 1 45 0 1246 153 106 4 chr13 62044906 62045160 -57699738 + L1MA8 LINE L1 6010 6289 -2 24 77 0 0 chr13 62046728 62046780 -57698118 + AT_rich Low_complexity Low_complexity 1 52 0 31 0 0 0 chr13 62047383 62047414 -57697484 + AT_rich Low_complexity Low_complexity 1 31 0 1674 117 74 93 chr13 62047567 62047944 -57696954 + THE1C LTR MaLR 5 374 -1 9874 123 44 7 chr13 62047945 62049468 -57695430 + THE1C-int LTR MaLR 1 1580 0 1631 135 57 86 chr13 62049468 62049854 -57695044 + THE1C LTR MaLR 1 375 0 228 67 0 0 chr13 62049895 62049925 -57694973 + (CA)n Simple_repeat Simple_repeat 2 31 0 529 273 10 62 chr13 62050964 62051173 -57693725 + MLT1J LTR MaLR 1 198 -313 1318 151 51 40 chr13 62051315 62051620 -57693278 - THE1B LTR MaLR -24 404 1 27 0 0 0 chr13 62051762 62051789 -57693109 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 62052199 62052220 -57692678 + AT_rich Low_complexity Low_complexity 1 21 0 2078 98 3 7 chr13 62053033 62053342 -57691556 + AluSp SINE Alu 1 308 0 785 275 11 42 chr13 62053525 62053787 -57691111 - L1ME3 LINE L1 -30 6132 5879 21 0 0 0 chr13 62053803 62053824 -57691074 + AT_rich Low_complexity Low_complexity 1 21 0 708 296 49 11 chr13 62053894 62054178 -57690720 - HAL1 LINE L1 -353 2154 1860 305 347 7 13 chr13 62054246 62054396 -57690502 + GA-rich Low_complexity Low_complexity 4 152 0 3105 161 11 2 chr13 62054505 62055059 -57689839 - L1P LINE L1 -874 5272 4714 278 141 115 51 chr13 62055032 62055110 -57689788 + L1P LINE L1 4638 4720 -1426 * 3184 265 103 23 chr13 62055097 62057249 -57687649 - L1ME3 LINE L1 -326 5840 3511 210 323 15 15 chr13 62057323 62057388 -57687510 + L2 LINE L2 2978 3042 -230 1224 240 58 49 chr13 62057745 62057892 -57687006 - MER90 LTR ERV1 -107 507 363 1790 210 63 50 chr13 62057892 62058396 -57686502 - MER67D LTR ERV1 -3 511 1 1224 240 58 49 chr13 62058396 62058677 -57686221 - MER90 LTR ERV1 -251 363 75 209 196 0 39 chr13 62058683 62058734 -57686164 + T-rich Low_complexity Low_complexity 2 50 0 232 200 0 0 chr13 62058765 62058815 -57686083 - LTR66 LTR ERVL -163 447 398 226 146 0 0 chr13 62058823 62058864 -57686034 + LTR66 LTR ERVL 398 438 -172 231 119 0 0 chr13 62058875 62058917 -57685981 + LTR66 LTR ERVL 398 439 -171 200 163 23 0 chr13 62058917 62058960 -57685938 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 227 164 16 0 chr13 62059000 62059061 -57685837 + (TA)n Simple_repeat Simple_repeat 1 62 0 346 277 77 15 chr13 62059742 62059872 -57685026 + L2 LINE L2 2164 2301 -1013 708 297 35 5 chr13 62060021 62060223 -57684675 + MLT1H LTR MaLR 6 213 -336 659 207 11 81 chr13 62060298 62060472 -57684426 + MLT2D LTR ERVL 253 414 0 270 0 0 0 chr13 62061369 62061399 -57683499 + (GA)n Simple_repeat Simple_repeat 2 31 0 2238 112 0 0 chr13 62061630 62061935 -57682963 - AluSx SINE Alu -3 309 5 227 359 72 34 chr13 62061985 62062222 -57682676 - L2 LINE L2 -86 3186 2941 477 0 0 0 chr13 62062590 62062643 -57682255 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 393 22 0 0 chr13 62062692 62062738 -57682160 + (TA)n Simple_repeat Simple_repeat 1 46 0 225 94 0 0 chr13 62062896 62062928 -57681970 + (TC)n Simple_repeat Simple_repeat 2 33 0 22 56 0 0 chr13 62063540 62063576 -57681322 + AT_rich Low_complexity Low_complexity 1 36 0 1100 52 0 0 chr13 62063577 62063711 -57681187 + AluY SINE Alu 1 134 -177 1842 101 0 0 chr13 62063711 62063959 -57680939 + AluY SINE Alu 50 297 -14 714 328 61 35 chr13 62064128 62064470 -57680428 - LTR16C LTR ERVL -5 486 136 909 121 0 7 chr13 62064555 62064704 -57680194 + L1PA13 LINE L1 6015 6162 -1 265 287 11 11 chr13 62065339 62065433 -57679465 - L1ME LINE L1 -449 5721 5628 806 356 101 28 chr13 62065507 62066533 -57678365 - HERVL LTR ERVL -887 4767 3667 560 320 103 16 chr13 62066565 62066877 -57678021 - HERVL LTR ERVL -2028 3626 3288 1618 189 71 16 chr13 62067178 62067501 -57677397 + MLT1A1 LTR MaLR 3 343 -22 462 347 117 7 chr13 62068130 62068454 -57676444 - HERVL LTR ERVL -3591 2063 1743 459 319 84 25 chr13 62069159 62069397 -57675501 - L2 LINE L2 -559 2755 2504 1281 145 26 0 chr13 62069444 62069671 -57675227 + L1P LINE L1 4950 5182 -964 4360 223 75 19 chr13 62069678 62070802 -57674096 - Charlie1 DNA MER1_type -15 2746 1545 285 109 0 0 chr13 62070802 62070848 -57674050 + (TG)n Simple_repeat Simple_repeat 1 46 0 4360 223 75 19 chr13 62070848 62070972 -57673926 - Charlie1 DNA MER1_type -1216 1545 1429 322 380 18 0 chr13 62071040 62071261 -57673637 - HERVL LTR ERVL -3521 2133 1909 209 163 20 0 chr13 62071469 62071518 -57673380 + (TA)n Simple_repeat Simple_repeat 1 50 0 226 121 17 17 chr13 62071640 62071698 -57673200 + (TA)n Simple_repeat Simple_repeat 2 59 0 693 175 0 0 chr13 62072700 62072820 -57672078 + FLAM_C SINE Alu 1 120 -23 387 0 0 0 chr13 62072820 62072863 -57672035 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2150 122 0 6 chr13 62072864 62073175 -57671723 + AluSc SINE Alu 1 309 0 198 0 0 0 chr13 62073181 62073203 -57671695 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 201 350 100 19 chr13 62074617 62074777 -57670121 - L2 LINE L2 -448 2866 2694 702 156 0 0 chr13 62075556 62075665 -57669233 - L1PA16 LINE L1 -9 6157 6049 4310 189 25 28 chr13 62075785 62076897 -57668001 + L1MB1 LINE L1 5054 6167 -1 24 32 0 0 chr13 62076898 62076929 -57667969 + AT_rich Low_complexity Low_complexity 1 31 0 396 71 0 0 chr13 62078195 62078251 -57666647 + (CA)n Simple_repeat Simple_repeat 1 56 0 21 36 0 0 chr13 62078364 62078392 -57666506 + AT_rich Low_complexity Low_complexity 1 28 0 238 229 0 0 chr13 62078400 62078448 -57666450 + T-rich Low_complexity Low_complexity 1 48 0 254 319 98 18 chr13 62079356 62079519 -57665379 - MIR SINE MIR -13 249 74 8903 38 1 0 chr13 62080236 62082090 -57662808 + L1PA3 LINE L1 4296 6150 -5 6290 82 26 3 chr13 62082114 62082140 -57662758 + L1PA7 LINE L1 4631 4655 -1499 180 0 0 0 chr13 62082140 62082160 -57662738 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6290 82 26 3 chr13 62082160 62083627 -57661271 + L1PA7 LINE L1 4655 6151 -3 413 255 107 44 chr13 62083757 62084028 -57660870 + L1ME3A LINE L1 5298 5585 -579 552 254 133 48 chr13 62084051 62084465 -57660433 + L1ME3A LINE L1 5713 6161 -9 841 210 65 76 chr13 62086003 62086293 -57658605 + L1MC3 LINE L1 6731 7017 -768 2883 221 49 12 chr13 62086300 62086989 -57657909 + L1MC3 LINE L1 7063 7777 -8 2266 102 3 3 chr13 62087279 62087592 -57657306 - AluSq SINE Alu 0 313 1 237 312 165 43 chr13 62087609 62088166 -57656732 + HAL1 LINE L1 32 656 -1851 1314 310 74 52 chr13 62088202 62089820 -57655078 + HAL1 LINE L1 736 2389 -118 463 178 11 4 chr13 62089824 62089932 -57654966 + L1MA7 LINE L1 5298 5404 -764 697 241 124 55 chr13 62089937 62090244 -57654654 - L1 LINE L1 -2985 3161 2834 4131 151 11 20 chr13 62090249 62090510 -57654388 + L1MA7 LINE L1 5538 5800 -491 351 0 0 0 chr13 62090510 62090549 -57654349 + (CA)n Simple_repeat Simple_repeat 2 40 0 4131 151 11 20 chr13 62090549 62091048 -57653850 + L1MA7 LINE L1 5800 6291 0 180 378 17 25 chr13 62091072 62091191 -57653707 - L3 LINE CR1 -1316 261 144 28 29 0 0 chr13 62092899 62092934 -57651964 + AT_rich Low_complexity Low_complexity 1 35 0 4989 153 11 58 chr13 62093280 62094385 -57650513 + L1PA16 LINE L1 5128 6164 -2 1404 142 56 30 chr13 62094559 62094827 -57650071 + L1PA15 LINE L1 5887 6161 -4 423 0 0 0 chr13 62094847 62094894 -57650004 + (TG)n Simple_repeat Simple_repeat 2 48 0 228 277 0 0 chr13 62094913 62094960 -57649938 + G-rich Low_complexity Low_complexity 6 52 0 25 0 0 0 chr13 62095608 62095633 -57649265 + AT_rich Low_complexity Low_complexity 1 25 0 2002 123 7 16 chr13 62095879 62096189 -57648709 + AluSx SINE Alu 6 312 0 25 31 0 0 chr13 62098089 62098121 -57646777 + AT_rich Low_complexity Low_complexity 1 32 0 2084 72 0 22 chr13 62098201 62098479 -57646419 - AluY SINE Alu 0 311 40 233 206 69 0 chr13 62099371 62099473 -57645425 + MER106B DNA MER1_type 753 861 -198 8075 217 44 26 chr13 62099505 62102279 -57642619 - L1MA9 LINE L1 -38 6274 3437 3683 31 2 0 chr13 62102279 62102723 -57642175 - L1PA4 LINE L1 -10 6145 5701 8075 217 44 26 chr13 62102723 62102863 -57642035 - L1MA9 LINE L1 -2875 3437 3301 410 251 77 58 chr13 62102868 62103075 -57641823 + MER106B DNA MER1_type 843 1053 -6 1151 203 22 14 chr13 62103115 62103337 -57641561 - AluJb SINE Alu -12 300 77 1255 208 26 92 chr13 62103706 62103946 -57640952 + MLT1A1 LTR MaLR 3 209 -156 2399 145 36 2 chr13 62103946 62104359 -57640539 + MSTA LTR MaLR 2 428 0 1255 208 26 92 chr13 62104359 62104507 -57640391 + MLT1A1 LTR MaLR 209 365 0 29 47 0 0 chr13 62104527 62104570 -57640328 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 62106256 62106278 -57638620 + AT_rich Low_complexity Low_complexity 1 22 0 197 350 0 0 chr13 62106735 62106795 -57638103 - L2 LINE L2 -1303 2011 1952 26 98 0 0 chr13 62107737 62107819 -57637079 + AT_rich Low_complexity Low_complexity 1 82 0 742 32 0 0 chr13 62108291 62108385 -57636513 - L1P LINE L1 -774 5381 5288 6533 33 0 0 chr13 62108385 62109160 -57635738 + L1PA4 LINE L1 5375 6152 -3 228 351 107 19 chr13 62110056 62110364 -57634534 - L2 LINE L2 -52 3261 2927 377 350 132 31 chr13 62110566 62111338 -57633560 - L2 LINE L2 -1095 2219 1370 755 275 0 0 chr13 62111971 62112138 -57632760 + FRAM SINE Alu 1 164 -12 227 280 136 48 chr13 62113633 62113833 -57631065 + MIR SINE MIR 17 230 -32 189 121 0 0 chr13 62113962 62113995 -57630903 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chr13 62114718 62114742 -57630156 + AT_rich Low_complexity Low_complexity 1 24 0 219 69 0 0 chr13 62115319 62115348 -57629550 + (TC)n Simple_repeat Simple_repeat 2 30 0 223 360 29 36 chr13 62116555 62116658 -57628240 - MIR SINE MIR -107 155 54 569 315 107 0 chr13 62116658 62116874 -57628024 + MIR SINE MIR 2 240 -22 27 62 0 0 chr13 62117016 62117064 -57627834 + AT_rich Low_complexity Low_complexity 1 48 0 37 23 0 0 chr13 62117920 62117964 -57626934 + AT_rich Low_complexity Low_complexity 1 44 0 7719 20 0 0 chr13 62118906 62119993 -57624905 - L1PA2 LINE L1 0 6155 5069 248 200 32 0 chr13 62120421 62120546 -57624352 + (TA)n Simple_repeat Simple_repeat 2 130 0 1051 290 67 13 chr13 62120579 62121092 -57623806 - MLT1E3 LTR MaLR -9 615 1 330 245 32 11 chr13 62121507 62121601 -57623297 - L2 LINE L2 -847 2467 2372 24 53 0 0 chr13 62121812 62121850 -57623048 + AT_rich Low_complexity Low_complexity 1 38 0 201 211 0 0 chr13 62123087 62123139 -57621759 + CT-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr13 62123664 62123686 -57621212 + AT_rich Low_complexity Low_complexity 1 22 0 827 271 82 67 chr13 62124413 62125012 -57619886 + L1ME3A LINE L1 5548 6155 -15 383 353 169 12 chr13 62125056 62125554 -57619344 - L2 LINE L2 -1024 2290 1715 194 380 0 0 chr13 62125575 62125654 -57619244 + MIR SINE MIR 74 152 -110 22 0 0 0 chr13 62127171 62127193 -57617705 + AT_rich Low_complexity Low_complexity 1 22 0 1456 228 15 42 chr13 62127437 62127837 -57617061 + MLT1B LTR MaLR 1 389 -1 412 197 70 49 chr13 62128285 62128427 -57616471 - L1MB8 LINE L1 -1 6177 6033 468 299 131 18 chr13 62128925 62129253 -57615645 + L1MEd LINE L1 499 863 -5256 25 51 0 0 chr13 62129459 62129498 -57615400 + AT_rich Low_complexity Low_complexity 1 39 0 2164 114 10 0 chr13 62130209 62130507 -57614391 - AluSp SINE Alu -12 301 1 262 267 86 9 chr13 62131027 62131132 -57613766 + MIR SINE MIR 140 252 -10 275 196 0 0 chr13 62131530 62131581 -57613317 - L1M1 LINE L1 -6674 891 841 7184 234 29 37 chr13 62131677 62133578 -57611320 - L1M1 LINE L1 -5911 1654 17 199 53 26 26 chr13 62133854 62133892 -57611006 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 494 152 22 0 chr13 62133892 62133984 -57610914 - L1PA8 LINE L1 -13 6159 6066 2265 88 0 0 chr13 62135707 62136014 -57608884 + AluY SINE Alu 2 308 -3 2277 97 0 6 chr13 62136513 62136824 -57608074 + AluY SINE Alu 1 309 -2 1721 86 22 98 chr13 62137539 62137854 -57607044 - LTR14A LTR ERVK 0 344 54 590 87 154 19 chr13 62137859 62137963 -57606935 - LTR14B LTR ERVK -489 119 2 28 0 0 0 chr13 62140068 62140096 -57604802 + AT_rich Low_complexity Low_complexity 1 28 0 1883 273 19 36 chr13 62140676 62141704 -57603194 - L1M1 LINE L1 -4100 2282 1175 5466 111 11 6 chr13 62141718 62143337 -57601561 - L1PA10 LINE L1 0 6168 4516 6969 136 14 37 chr13 62143337 62144592 -57600306 - L1P LINE L1 -1483 4663 3436 374 271 34 8 chr13 62144586 62144704 -57600194 - L1M4 LINE L1 -6408 134 14 * 22 0 0 0 chr13 62145179 62145201 -57599697 + AT_rich Low_complexity Low_complexity 1 22 0 595 225 0 33 chr13 62145210 62145330 -57599568 - FLAM_C SINE Alu -24 119 4 392 281 71 59 chr13 62145523 62146086 -57598812 + L1MEd LINE L1 670 1239 -4880 335 355 77 21 chr13 62146138 62146372 -57598526 + L1M2 LINE L1 2313 2559 -4290 24 53 0 0 chr13 62146484 62146522 -57598376 + AT_rich Low_complexity Low_complexity 1 38 0 851 294 32 23 chr13 62147029 62147376 -57597522 - HERV16 LTR ERVL -3668 1328 979 1613 172 13 13 chr13 62147413 62147716 -57597182 - AluJo SINE Alu -9 303 1 1016 332 13 3 chr13 62147716 62148093 -57596805 - HERV16 LTR ERVL -4328 668 288 1809 260 43 46 chr13 62148122 62148707 -57596191 - MLT1E LTR MaLR 0 593 11 642 343 21 21 chr13 62148740 62148973 -57595925 - HERV16 LTR ERVL -4760 236 4 430 380 40 27 chr13 62149036 62149365 -57595533 - LTR16A LTR ERVL -93 357 25 623 310 14 42 chr13 62149458 62149663 -57595235 + LTR16A LTR ERVL 105 303 -147 829 217 28 49 chr13 62149663 62149949 -57594949 - LTR4 LTR ERV1 0 596 317 501 252 14 96 chr13 62150131 62150349 -57594549 - LTR4 LTR ERV1 -396 200 1 945 341 113 36 chr13 62150533 62151412 -57593486 + L2 LINE L2 1957 2902 -412 270 120 15 5 chr13 62151779 62151833 -57593065 + MLT1J LTR MaLR 358 461 -33 203 327 35 44 chr13 62151834 62151947 -57592951 + L2 LINE L2 2958 3069 -244 1908 163 73 14 chr13 62152081 62152425 -57592473 + THE1B LTR MaLR 1 364 0 11204 107 8 1 chr13 62152425 62153993 -57590905 + THE1B-int LTR MaLR 1 1580 0 2047 135 76 15 chr13 62153995 62154336 -57590562 + THE1B LTR MaLR 3 364 0 339 65 0 0 chr13 62155313 62155359 -57589539 + (TG)n Simple_repeat Simple_repeat 2 47 0 1538 213 86 38 chr13 62155503 62156024 -57588874 - LTR55 LTR ERV -2 546 1 921 103 11 33 chr13 62156038 62156222 -57588676 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 370 303 42 0 chr13 62156689 62156808 -57588090 + L2 LINE L2 3184 3307 -6 381 339 17 0 chr13 62157189 62157304 -57587594 + L2 LINE L2 3139 3255 -17 501 319 86 52 chr13 62157686 62158012 -57586886 - MLT1G LTR MaLR -209 381 45 228 197 0 113 chr13 62158831 62158902 -57585996 - HAL1b LINE L1 -854 494 432 909 351 88 41 chr13 62159598 62160496 -57584402 + ERVL LTR ERVL 2892 3831 -1933 2438 60 0 0 chr13 62160669 62160971 -57583927 - AluY SINE Alu -9 302 1 435 355 24 32 chr13 62161269 62161678 -57583220 + ERVL LTR ERVL 4888 5293 -192 431 329 30 53 chr13 62161970 62162274 -57582624 + LTR16C LTR ERVL 169 465 -26 207 209 0 23 chr13 62162288 62162331 -57582567 + (TATG)n Simple_repeat Simple_repeat 4 45 0 264 235 0 0 chr13 62162331 62162399 -57582499 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 280 270 99 9 chr13 62163305 62163416 -57581482 + MIR SINE MIR 112 232 -30 1535 188 67 12 chr13 62163417 62163758 -57581140 + MER46B DNA MER2_type 2 236 0 27 29 0 0 chr13 62163779 62163813 -57581085 + AT_rich Low_complexity Low_complexity 1 34 0 482 308 10 99 chr13 62164137 62164429 -57580469 + MLT1H1 LTR MaLR 27 292 -263 22 0 0 0 chr13 62164954 62164976 -57579922 + AT_rich Low_complexity Low_complexity 1 22 0 373 209 5 64 chr13 62165523 62165710 -57579188 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 29 60 0 0 chr13 62165718 62165768 -57579130 + AT_rich Low_complexity Low_complexity 1 50 0 1390 309 30 13 chr13 62165774 62166317 -57578581 + MLT1H1 LTR MaLR 4 555 0 22 0 0 0 chr13 62166416 62166438 -57578460 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 62166645 62166671 -57578227 + AT_rich Low_complexity Low_complexity 1 26 0 545 351 10 5 chr13 62166797 62166999 -57577899 - HERVL40 LTR ERVL -2611 2919 2717 23 33 0 0 chr13 62167039 62167069 -57577829 + AT_rich Low_complexity Low_complexity 1 30 0 230 200 33 33 chr13 62167079 62167139 -57577759 + L1MC/D LINE L1 5741 5800 -2008 771 176 6 36 chr13 62167459 62167624 -57577274 - L1PB4 LINE L1 -5 6151 5992 567 247 11 24 chr13 62167877 62168128 -57576770 + MSTC LTR MaLR 1 339 -57 1683 147 0 0 chr13 62168128 62168397 -57576501 - AluSc SINE Alu 0 302 34 567 247 11 24 chr13 62168397 62168455 -57576443 + MSTC LTR MaLR 339 396 0 923 293 52 40 chr13 62168461 62168887 -57576011 - LTR40c LTR ERVL -34 431 1 452 357 39 47 chr13 62168900 62169385 -57575513 - L1MEc LINE L1 -5802 594 114 402 21 0 0 chr13 62171700 62171747 -57573151 + (TG)n Simple_repeat Simple_repeat 1 47 0 32 26 0 0 chr13 62171881 62171920 -57572978 + AT_rich Low_complexity Low_complexity 1 39 0 602 293 180 46 chr13 62172100 62173069 -57571829 + L1M4 LINE L1 3769 4866 -1280 21 57 0 0 chr13 62173097 62173132 -57571766 + AT_rich Low_complexity Low_complexity 1 35 0 484 118 0 32 chr13 62173335 62173428 -57571470 + (TCCC)n Simple_repeat Simple_repeat 3 92 0 2202 227 81 87 chr13 62173429 62174544 -57570354 + Charlie1 DNA MER1_type 1493 2600 -161 501 234 8 0 chr13 62175002 62175126 -57569772 + Charlie1 DNA MER1_type 2631 2755 -6 848 229 69 67 chr13 62175173 62175636 -57569262 - MER4C LTR ERV1 -1 464 1 5400 170 64 107 chr13 62175658 62177372 -57567526 - MER4C-int LTR ERV1 -14 6584 4944 3471 202 116 39 chr13 62177376 62178387 -57566511 + LTR28 LTR ERV1 1 1755 0 2661 172 43 33 chr13 62178388 62178997 -57565901 - MER4C-int LTR ERV1 -3271 4849 4235 2411 179 27 78 chr13 62178995 62179729 -57565169 - LTR49-int LTR ERV1 -1958 3385 2311 * 42 20 0 0 chr13 62179775 62179824 -57565074 + AT_rich Low_complexity Low_complexity 1 49 0 1493 154 142 34 chr13 62179843 62180203 -57564695 - LTR49-int LTR ERV1 -4429 1667 504 227 355 0 0 chr13 62180206 62180268 -57564630 - tRNA-Glu-GAG tRNA tRNA -4 71 10 469 184 205 43 chr13 62180276 62180518 -57564380 - LTR29-int LTR ERV1 -3150 1730 898 * 1131 223 29 22 chr13 62180509 62180783 -57564115 - LTR29-int LTR ERV1 -6051 280 5 769 199 49 90 chr13 62180788 62181120 -57563778 - LTR29 LTR ERV1 0 622 265 447 178 28 19 chr13 62181548 62181655 -57563243 - MER4-int LTR ERV1 -6352 246 139 202 302 73 31 chr13 62181742 62181838 -57563060 + MIR SINE MIR 116 215 -47 2425 174 11 22 chr13 62181870 62182329 -57562569 - MER6 DNA MER2_type -2 863 150 2252 202 19 29 chr13 62183402 62183887 -57561011 + MLT1D LTR MaLR 5 484 -21 423 38 0 0 chr13 62185630 62185683 -57559215 + (CA)n Simple_repeat Simple_repeat 1 53 0 394 312 100 24 chr13 62186687 62186857 -57558041 + MIR SINE MIR 2 184 -78 368 329 32 28 chr13 62186973 62187189 -57557709 + L2 LINE L2 3095 3311 -2 1493 241 62 10 chr13 62187714 62188160 -57556738 - L1ME1 LINE L1 -23 6143 5681 230 247 39 52 chr13 62188472 62188549 -57556349 + MER5A DNA MER1_type 100 175 -14 201 154 0 0 chr13 62190665 62190704 -57554194 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr13 62190808 62190837 -57554061 + AT_rich Low_complexity Low_complexity 1 29 0 1934 150 36 22 chr13 62192340 62192699 -57552199 - THE1B LTR MaLR 0 364 1 11517 100 2 4 chr13 62192699 62194282 -57550616 - THE1B-int LTR MaLR 0 1580 1 1886 190 5 19 chr13 62194282 62194651 -57550247 - THE1B LTR MaLR 0 364 1 1511 331 73 26 chr13 62195433 62195673 -57549225 + L2 LINE L2 2042 2269 -1045 1812 136 18 4 chr13 62195673 62195981 -57548917 + AluSx SINE Alu 1 312 0 1511 331 73 26 chr13 62195981 62196633 -57548265 + L2 LINE L2 2269 2977 -337 6362 89 16 11 chr13 62196663 62198295 -57546603 - L1PA10 LINE L1 -4 6164 4524 3317 137 2 4 chr13 62198295 62198807 -57546091 + MER9 LTR ERVK 1 511 0 6362 89 16 11 chr13 62198807 62199043 -57545855 - L1PA10 LINE L1 -1644 4524 4291 870 195 33 118 chr13 62199108 62199380 -57545518 - AluJo SINE Alu -54 258 10 3320 176 59 33 chr13 62199741 62200406 -57544492 - MER54B LTR ERVL -111 682 1 27 81 0 0 chr13 62200480 62200542 -57544356 + AT_rich Low_complexity Low_complexity 1 62 0 1849 127 6 60 chr13 62200790 62201104 -57543794 - AluSx SINE Alu -15 297 1 180 277 11 85 chr13 62201803 62201897 -57543001 + L2 LINE L2 3211 3297 -16 2343 226 22 11 chr13 62202334 62202873 -57542025 - MER89 LTR ERV1 -14 545 1 209 241 0 17 chr13 62203185 62203243 -57541655 + (TA)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr13 62203414 62203438 -57541460 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 62204520 62204542 -57540356 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr13 62204758 62204797 -57540101 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr13 62204835 62204864 -57540034 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 62205205 62205227 -57539671 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr13 62206149 62206184 -57538714 + AT_rich Low_complexity Low_complexity 1 35 0 322 276 18 111 chr13 62208002 62208219 -57536679 - L2 LINE L2 -5 3308 3112 266 298 0 58 chr13 62208285 62208389 -57536509 - L2 LINE L2 -3108 206 109 23 33 0 0 chr13 62208811 62208841 -57536057 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 62208925 62208947 -57535951 + AT_rich Low_complexity Low_complexity 1 22 0 2084 124 0 0 chr13 62209905 62210204 -57534694 - AluSx SINE Alu -13 299 1 4076 153 23 7 chr13 62210341 62211041 -57533857 - MER50 LTR ERV1 -23 711 1 1055 177 0 30 chr13 62211114 62211312 -57533586 + AluJo SINE Alu 1 192 -120 279 79 0 0 chr13 62211448 62211486 -57533412 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 335 320 31 89 chr13 62211486 62211711 -57533187 - MLT1L LTR MaLR -78 537 326 1930 258 69 28 chr13 62211745 62212551 -57532347 - L1ME1 LINE L1 0 6100 5222 1936 93 6 93 chr13 62212588 62212912 -57531986 - AluSx SINE Alu -16 296 1 648 236 49 52 chr13 62212916 62213264 -57531634 - L1ME1 LINE L1 -2842 3238 2892 * 679 315 57 38 chr13 62213255 62213946 -57530952 - L1ME1 LINE L1 -4406 1674 1005 1888 193 120 5 chr13 62213963 62214389 -57530509 - L1PA16 LINE L1 -16 6150 5676 1008 278 94 69 chr13 62214433 62214915 -57529983 - L1ME1 LINE L1 -5069 1001 485 1339 189 83 27 chr13 62214915 62215253 -57529645 - MLT1A1 LTR MaLR -4 361 5 1008 278 94 69 chr13 62215253 62215656 -57529242 - L1ME1 LINE L1 -5585 485 94 380 321 79 60 chr13 62215641 62216121 -57528777 - L1ME LINE L1 -5570 500 12 * 2158 179 117 5 chr13 62216393 62217484 -57527414 - SATR1 Satellite Satellite 0 1213 1 2133 165 92 55 chr13 62217512 62218375 -57526523 - SATR1 Satellite Satellite -1 894 1 1874 212 91 2 chr13 62218404 62218972 -57525926 - SATR1 Satellite Satellite 0 618 1 31 82 0 0 chr13 62218984 62219057 -57525841 + AT_rich Low_complexity Low_complexity 1 73 0 403 230 6 40 chr13 62219067 62219241 -57525657 + (TTA)n Simple_repeat Simple_repeat 2 169 0 262 117 106 21 chr13 62219265 62219359 -57525539 + (TTAA)n Simple_repeat Simple_repeat 4 105 0 2258 174 105 3 chr13 62219361 62220666 -57524232 + SATR1 Satellite Satellite 1 1438 -107 2281 36 0 0 chr13 62220679 62220954 -57523944 + L1PA5 LINE L1 5876 6150 -4 2334 239 104 23 chr13 62220999 62222538 -57522360 - L1MB7 LINE L1 -10 6174 4497 253 298 101 17 chr13 62222757 62222935 -57521963 - HAL1b LINE L1 -741 607 415 4758 173 46 14 chr13 62223053 62224266 -57520632 + L1PB4 LINE L1 4534 5793 -363 279 0 0 0 chr13 62224266 62224297 -57520601 + (CA)n Simple_repeat Simple_repeat 2 32 0 4758 173 46 14 chr13 62224297 62224653 -57520245 + L1PB4 LINE L1 5793 6136 -20 1024 65 0 0 chr13 62225480 62225604 -57519294 - AluSp SINE Alu -189 124 1 1852 171 14 17 chr13 62225682 62226044 -57518854 + MER46B DNA MER2_type 1 236 0 28 48 0 0 chr13 62226975 62227017 -57517881 + AT_rich Low_complexity Low_complexity 1 42 0 566 76 13 0 chr13 62227544 62227623 -57517275 - MADE1 DNA Mariner 0 80 1 8502 189 52 52 chr13 62328969 62331518 -57413380 + L1MA7 LINE L1 3197 5750 -541 206 62 31 0 chr13 62331518 62331550 -57413348 + (CA)n Simple_repeat Simple_repeat 2 34 0 8502 189 52 52 chr13 62331550 62332084 -57412814 + L1MA7 LINE L1 5750 6282 -9 2432 150 19 5 chr13 62332465 62332884 -57412014 - L1MA4A LINE L1 -5 6298 5874 734 314 197 17 chr13 62333340 62333496 -57411402 - L2 LINE L2 -338 2976 2849 1990 70 19 70 chr13 62333496 62333808 -57411090 + AluY SINE Alu 1 296 -15 734 314 197 17 chr13 62333808 62333863 -57411035 - L2 LINE L2 -465 2849 2805 1432 202 57 0 chr13 62333863 62334145 -57410753 + AluJb SINE Alu 1 298 -14 734 314 197 17 chr13 62334145 62334460 -57410438 - L2 LINE L2 -509 2805 2354 542 302 221 30 chr13 62334689 62335331 -57409567 - L1MCc LINE L1 -3250 3691 2927 252 225 38 12 chr13 62335334 62335414 -57409484 + T-rich Low_complexity Low_complexity 3 84 0 348 321 117 19 chr13 62336224 62336548 -57408350 - L1MEd LINE L1 -4862 1257 902 1160 185 19 101 chr13 62337320 62337698 -57407200 - MLT1A1 LTR MaLR 0 365 19 1801 101 16 75 chr13 62337767 62338075 -57406823 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr13 62338639 62338661 -57406237 + AT_rich Low_complexity Low_complexity 1 22 0 2140 85 3 29 chr13 62338815 62339122 -57405776 - AluSx SINE Alu -13 299 1 916 236 15 0 chr13 62339230 62339429 -57405469 - MER2 DNA MER2_type -135 210 9 2225 91 3 3 chr13 62339569 62339866 -57405032 - AluSx SINE Alu -15 297 1 487 359 15 10 chr13 62340019 62340225 -57404673 + L2 LINE L2 2469 2675 -639 2139 106 3 7 chr13 62340295 62340597 -57404301 + AluSx SINE Alu 1 301 -11 1039 143 6 12 chr13 62340599 62340767 -57404131 + AluSg/x SINE Alu 137 303 -9 347 305 32 39 chr13 62340767 62340921 -57403977 + L2 LINE L2 2706 2858 -456 359 338 47 47 chr13 62341003 62341281 -57403617 + L2 LINE L2 2952 3229 -84 23 33 0 0 chr13 62341657 62341687 -57403211 + AT_rich Low_complexity Low_complexity 1 30 0 202 291 87 10 chr13 62342446 62342549 -57402349 - MIR3 SINE MIR -2 206 96 237 65 0 0 chr13 62343028 62343059 -57401839 + (TG)n Simple_repeat Simple_repeat 1 31 0 27 29 0 0 chr13 62343474 62343508 -57401390 + AT_rich Low_complexity Low_complexity 1 34 0 1589 199 14 38 chr13 62343940 62344311 -57400587 + L1MA7 LINE L1 5930 6291 0 310 206 33 54 chr13 62344369 62344461 -57400437 + L1ME3A LINE L1 6075 6164 -6 494 335 33 11 chr13 62344519 62344791 -57400107 - L1MCc LINE L1 -4371 2751 2474 432 265 47 67 chr13 62344786 62344954 -57399944 - L1MCc LINE L1 -4925 1914 1701 * 1226 183 88 11 chr13 62344954 62345217 -57399681 + AluJb SINE Alu 2 284 -28 432 265 47 67 chr13 62345217 62345301 -57399597 - L1MCc LINE L1 -5138 1701 1617 336 298 57 0 chr13 62345449 62345590 -57399308 - L1MCc LINE L1 -5002 1421 1273 1867 150 16 47 chr13 62346059 62346365 -57398533 + THE1C LTR MaLR 1 294 -81 507 73 0 0 chr13 62346365 62346433 -57398465 + (TA)n Simple_repeat Simple_repeat 1 68 0 1867 150 16 47 chr13 62346433 62346513 -57398385 + THE1C LTR MaLR 294 375 0 22 0 0 0 chr13 62348244 62348266 -57396632 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 62349003 62349028 -57395870 + AT_rich Low_complexity Low_complexity 1 25 0 197 288 50 12 chr13 62349618 62349698 -57395200 - L2 LINE L2 -68 3245 3163 467 309 96 9 chr13 62349768 62349988 -57394910 - L2 LINE L2 -135 3178 2940 28 29 0 0 chr13 62350302 62350337 -57394561 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr13 62350753 62350791 -57394107 + AT_rich Low_complexity Low_complexity 1 38 0 1910 191 84 22 chr13 62350870 62351320 -57393578 + MER66B LTR ERV1 9 486 0 24 32 0 0 chr13 62352515 62352546 -57392352 + AT_rich Low_complexity Low_complexity 1 31 0 341 337 83 51 chr13 62353455 62353829 -57391069 + L2 LINE L2 2922 3307 -6 229 327 67 0 chr13 62354537 62354641 -57390257 - MIR3 SINE MIR -15 193 83 539 278 81 17 chr13 62358168 62358341 -57386557 - MIR SINE MIR -77 185 2 687 201 77 5 chr13 62358698 62358892 -57386006 + L1MB2 LINE L1 5964 6171 0 23 0 0 0 chr13 62359247 62359270 -57385628 + AT_rich Low_complexity Low_complexity 1 23 0 1799 181 0 7 chr13 62359272 62359575 -57385323 + AluSx SINE Alu 3 303 -9 28 0 0 0 chr13 62359694 62359722 -57385176 + AT_rich Low_complexity Low_complexity 1 28 0 357 330 31 21 chr13 62359803 62359997 -57384901 + MLT1J2 LTR MaLR 4 199 -251 361 301 91 8 chr13 62360947 62361309 -57383589 + L1ME3A LINE L1 4942 5333 -813 4807 106 106 0 chr13 62361333 62362080 -57382818 - LTR12 LTR ERV1 0 826 1 356 355 32 0 chr13 62362084 62362270 -57382628 + L1ME3A LINE L1 5362 5553 -2255 21 0 0 0 chr13 62362358 62362379 -57382519 + AT_rich Low_complexity Low_complexity 1 21 0 254 289 63 40 chr13 62362409 62362662 -57382236 + L1ME3A LINE L1 5688 5946 -224 2480 150 95 4 chr13 62364814 62365267 -57379631 - L1PB4 LINE L1 -1 6155 5662 1184 228 142 88 chr13 62365267 62366175 -57378723 + LTR1B LTR ERV1 1 1020 0 7946 194 32 22 chr13 62366176 62368417 -57376481 - L1PB4 LINE L1 -491 5665 3410 3197 183 45 78 chr13 62368559 62369412 -57375486 - L1MA8 LINE L1 -3 6288 5465 2133 127 0 0 chr13 62369730 62370029 -57374869 - AluY SINE Alu -12 299 1 32 0 0 0 chr13 62371110 62371142 -57373756 + AT_rich Low_complexity Low_complexity 1 32 0 3839 198 40 25 chr13 62371142 62372287 -57372611 + MER52A LTR ERV1 656 1755 0 1593 203 29 51 chr13 62372787 62373318 -57371580 - L1MA9 LINE L1 -173 6127 5653 316 215 91 25 chr13 62373337 62373458 -57371440 - L1MC4 LINE L1 -813 7229 7101 21 0 0 0 chr13 62373566 62373587 -57371311 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 62373637 62373660 -57371238 + AT_rich Low_complexity Low_complexity 1 23 0 217 281 34 82 chr13 62374190 62374336 -57370562 - MIR SINE MIR -69 193 55 210 377 47 19 chr13 62374816 62374922 -57369976 + L2 LINE L2 2941 3049 -223 329 300 161 22 chr13 62375909 62376089 -57368809 + MER63A DNA MER1_type 4 208 -2 23 54 0 0 chr13 62376630 62376667 -57368231 + AT_rich Low_complexity Low_complexity 1 37 0 353 280 70 0 chr13 62378598 62378741 -57366157 - MER103 DNA DNA -12 154 2 225 94 0 0 chr13 62379234 62379266 -57365632 + (TG)n Simple_repeat Simple_repeat 2 33 0 2033 127 3 0 chr13 62380191 62380474 -57364424 - AluSx SINE Alu -26 286 3 4101 108 58 69 chr13 62380904 62381698 -57363200 + LTR1 LTR ERV1 1 785 0 1406 231 67 69 chr13 62381797 62382378 -57362520 + LTR38B LTR ERV1 1 580 -30 1957 125 7 3 chr13 62382429 62382718 -57362180 + AluSq SINE Alu 1 290 -23 229 138 17 17 chr13 62382888 62382946 -57361952 + (TA)n Simple_repeat Simple_repeat 2 59 0 21 36 0 0 chr13 62383384 62383412 -57361486 + AT_rich Low_complexity Low_complexity 1 28 0 659 189 7 7 chr13 62383414 62383567 -57361331 - L1MA7 LINE L1 -4 6287 6135 303 71 0 0 chr13 62383850 62383892 -57361006 + (CA)n Simple_repeat Simple_repeat 1 42 0 1850 142 0 7 chr13 62383907 62384196 -57360702 - AluSx SINE Alu -19 293 7 21 0 0 0 chr13 62385233 62385254 -57359644 + AT_rich Low_complexity Low_complexity 1 21 0 302 179 0 15 chr13 62386895 62386962 -57357936 + GA-rich Low_complexity Low_complexity 4 69 0 2291 92 16 0 chr13 62387127 62387430 -57357468 + AluY SINE Alu 4 311 0 757 322 99 38 chr13 62387544 62388548 -57356350 + L1MEc LINE L1 108 1172 -5224 1233 173 26 22 chr13 62389359 62389631 -57355267 + L1MA3 LINE L1 6033 6305 0 1214 279 93 24 chr13 62389796 62390376 -57354522 - L1ME1 LINE L1 -4 6231 5612 1605 256 174 62 chr13 62390400 62391639 -57353259 - L1ME1 LINE L1 -1304 4911 3385 215 31 31 0 chr13 62391639 62391671 -57353227 + (TA)n Simple_repeat Simple_repeat 2 34 0 1605 256 174 62 chr13 62391671 62392333 -57352565 - L1ME1 LINE L1 -2830 3385 2798 180 77 0 0 chr13 62392333 62392359 -57352539 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 495 281 60 87 chr13 62392409 62392562 -57352336 - L1ME1 LINE L1 -4333 2063 1907 2244 101 7 0 chr13 62392562 62392870 -57352028 + AluSp SINE Alu 1 310 -3 2221 104 3 0 chr13 62392870 62393168 -57351730 + AluY SINE Alu 1 299 -12 225 0 0 0 chr13 62393168 62393193 -57351705 + (TA)n Simple_repeat Simple_repeat 2 26 0 495 281 60 87 chr13 62393193 62393803 -57351095 - L1ME1 LINE L1 -4487 1909 1284 2275 94 3 0 chr13 62393803 62394100 -57350798 + AluY SINE Alu 1 298 -13 495 281 60 87 chr13 62394100 62394280 -57350618 - L1ME1 LINE L1 -5112 1284 1101 1716 141 0 7 chr13 62394280 62394550 -57350348 - L1PB4 LINE L1 -3 6153 5886 495 281 60 87 chr13 62394550 62394781 -57350117 - L1ME1 LINE L1 -5295 1101 917 1162 274 29 16 chr13 62394782 62395336 -57349562 - LTR40a LTR ERVL -1 518 14 2103 291 44 30 chr13 62395354 62396226 -57348672 - L1ME1 LINE L1 -5476 920 37 685 111 0 10 chr13 62396269 62396368 -57348530 + MER4A LTR ERV1 1 98 -566 2446 112 7 84 chr13 62396368 62396600 -57348298 + MER4A LTR ERV1 261 445 -219 2180 156 8 16 chr13 62396600 62396978 -57347920 - THE1C LTR MaLR 0 375 1 2446 112 7 84 chr13 62396978 62397183 -57347715 + MER4A LTR ERV1 445 664 0 7049 156 134 49 chr13 62397186 62397421 -57347477 + MER4A-int LTR ERV1 1 214 -6384 1856 151 103 26 chr13 62397421 62397839 -57347059 + LTR7 LTR ERV1 1 450 0 7049 156 134 49 chr13 62397839 62398597 -57346301 + MER4A-int LTR ERV1 214 906 -5692 387 0 0 0 chr13 62398597 62398640 -57346258 + (TG)n Simple_repeat Simple_repeat 2 44 0 7049 156 134 49 chr13 62398640 62400350 -57344548 + MER4A-int LTR ERV1 906 2468 -4130 2015 121 0 3 chr13 62400350 62400639 -57344259 - AluY SINE Alu -23 288 1 261 0 0 0 chr13 62400639 62400668 -57344230 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1834 163 3 0 chr13 62400668 62400951 -57343947 - AluSx SINE Alu -28 284 1 7049 156 134 49 chr13 62400951 62401114 -57343784 + MER4A-int LTR ERV1 2468 2616 -3982 189 0 0 0 chr13 62401114 62401135 -57343763 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7049 156 134 49 chr13 62401135 62401441 -57343457 + MER4A-int LTR ERV1 2616 3686 -2912 6157 156 54 21 chr13 62401435 62403133 -57341765 + MER4A-int LTR ERV1 3837 5506 -757 * 2489 222 100 54 chr13 62403133 62403955 -57340943 + LTR28 LTR ERV1 1 951 -69 251 250 0 17 chr13 62404013 62404073 -57340825 + LTR28 LTR ERV1 956 1014 -6 4681 131 30 37 chr13 62404077 62404939 -57339959 + MER4A-int LTR ERV1 5706 6561 -37 472 177 31 10 chr13 62405025 62405121 -57339777 + MER4A LTR ERV1 1 98 -566 2442 142 15 27 chr13 62405121 62405530 -57339368 + MER4A LTR ERV1 261 664 0 1505 168 8 4 chr13 62406156 62406400 -57338498 + AluSx SINE Alu 1 245 -67 2371 187 5 7 chr13 62408374 62408791 -57336107 + MSTB1 LTR MaLR 1 416 -16 761 179 64 92 chr13 62408932 62409150 -57335748 - MER20 DNA MER1_type 0 219 8 2088 93 0 53 chr13 62409822 62410142 -57334756 - AluSq SINE Alu 0 304 1 4870 180 26 19 chr13 62410312 62410512 -57334386 - L1MA4 LINE L1 -8 6292 6095 2124 180 65 0 chr13 62410512 62410912 -57333986 - MSTB LTR MaLR 0 426 1 7880 208 10 19 chr13 62410912 62412578 -57332320 - MSTB-int LTR MaLR 0 1651 1 2130 198 44 2 chr13 62412578 62412987 -57331911 - MSTB LTR MaLR 0 426 1 4870 180 26 19 chr13 62412987 62413952 -57330946 - L1MA4 LINE L1 -204 6096 5118 784 156 13 45 chr13 62413955 62414109 -57330789 - MSTB LTR MaLR -2 373 225 245 186 0 0 chr13 62414630 62414673 -57330225 + LTR30 LTR ERV1 1 43 -679 744 189 142 21 chr13 62414673 62414933 -57329965 + LTR12 LTR ERV1 48 285 -429 285 267 11 0 chr13 62414934 62415024 -57329874 + LTR30 LTR ERV1 553 643 -79 674 135 0 0 chr13 62415025 62415129 -57329769 + LTR12 LTR ERV1 481 584 -130 5806 136 12 14 chr13 62415145 62416085 -57328813 + HERV9 LTR ERV1 54 991 -7408 5082 112 31 14 chr13 62416092 62416867 -57328031 + HERV9 LTR ERV1 1164 1951 -6448 7304 86 140 4 chr13 62416867 62417955 -57326943 + MER11B LTR ERVK 1 1236 0 21741 171 2 13 chr13 62417955 62419292 -57325606 + HERV9 LTR ERV1 2030 3381 -4876 2268 102 0 34 chr13 62419292 62419614 -57325284 + AluY SINE Alu 1 311 0 21741 171 2 13 chr13 62419614 62421819 -57323079 + HERV9 LTR ERV1 3381 5531 -2726 10997 113 2 10 chr13 62421817 62423440 -57321458 + HERV9 LTR ERV1 6789 8399 0 * 248 211 0 0 chr13 62423440 62423492 -57321406 + LTR30 LTR ERV1 1 52 -670 645 162 126 113 chr13 62423492 62423714 -57321184 + LTR12 LTR ERV1 53 277 -437 372 208 0 0 chr13 62423714 62423791 -57321107 + LTR30 LTR ERV1 544 620 -102 681 203 24 0 chr13 62423791 62423914 -57320984 + LTR12 LTR ERV1 355 480 -234 804 262 80 77 chr13 62425267 62425630 -57319268 + MER31-int LTR ERV1 3543 3906 -1030 344 231 0 13 chr13 62425680 62425758 -57319140 + MER31-int LTR ERV1 4131 4207 -729 1374 231 45 5 chr13 62425777 62426154 -57318744 + L1MA9 LINE L1 5888 6279 -33 2329 74 24 0 chr13 62426538 62426834 -57318064 - AluY SINE Alu -8 303 1 222 160 0 0 chr13 62427669 62427719 -57317179 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 1684 281 104 19 chr13 62428587 62429125 -57315773 - MLT1E LTR MaLR -9 584 1 456 308 69 8 chr13 62429169 62429429 -57315469 + L1MEc LINE L1 1458 1733 -4663 877 293 36 63 chr13 62429432 62429605 -57315293 - MLT1F1 LTR MaLR 0 567 391 2048 109 0 3 chr13 62429605 62429932 -57314966 - AluY SINE Alu 0 326 1 877 293 36 63 chr13 62429932 62430283 -57314615 - MLT1F1 LTR MaLR -176 391 46 459 282 50 109 chr13 62430303 62430725 -57314173 - MLT1F1-int LTR MaLR 0 1371 975 2185 108 0 3 chr13 62430729 62431016 -57313882 + AluSg SINE Alu 13 298 -12 1862 156 3 29 chr13 62431303 62431617 -57313281 + AluSx SINE Alu 1 306 -6 377 329 60 18 chr13 62431905 62432188 -57312710 - MLT1F1-int LTR MaLR -760 611 317 * 3515 156 37 16 chr13 62432187 62432875 -57312023 - L1MA4 LINE L1 -27 6273 5390 2195 97 0 16 chr13 62432875 62433184 -57311714 - AluSq SINE Alu -9 304 1 3515 156 37 16 chr13 62433184 62433284 -57311614 - L1MA4 LINE L1 -910 5390 5294 7085 193 74 61 chr13 62433284 62435010 -57309888 + MER52A LTR ERV1 1 1748 -7 1837 208 0 0 chr13 62435017 62435401 -57309497 - L1MA4 LINE L1 -849 5297 4914 * 2652 162 8 6 chr13 62435396 62435897 -57309001 + L1 LINE L1 4467 4968 -1178 329 276 53 59 chr13 62436023 62436175 -57308723 - MLT1F1 LTR MaLR -2 565 415 235 325 39 0 chr13 62436178 62436255 -57308643 - MLT1F LTR MaLR -462 80 1 416 269 51 0 chr13 62436255 62436411 -57308487 + L1MEc LINE L1 1732 1895 -4501 520 278 57 23 chr13 62436517 62436866 -57308032 + L1MEc LINE L1 1904 2264 -4132 4323 152 14 37 chr13 62436917 62436982 -57307916 + L1PA16 LINE L1 5152 5217 -949 1949 143 3 16 chr13 62436982 62437290 -57307608 + AluSx SINE Alu 2 305 -7 4323 152 14 37 chr13 62437290 62437933 -57306965 + L1PA16 LINE L1 5217 5824 -342 2347 71 3 3 chr13 62437933 62438229 -57306669 + AluY SINE Alu 1 296 -15 4323 152 14 37 chr13 62438229 62438461 -57306437 + L1PA16 LINE L1 5824 6060 -106 23 54 0 0 chr13 62438503 62438540 -57306358 + AT_rich Low_complexity Low_complexity 1 37 0 616 278 14 0 chr13 62438556 62438779 -57306119 + L1M4 LINE L1 4501 4726 -1420 355 279 91 19 chr13 62439734 62439888 -57305010 + LTR33 LTR ERVL 10 174 -347 245 376 8 0 chr13 62439997 62440130 -57304768 + LTR33 LTR ERVL 323 456 -65 621 213 55 0 chr13 62440269 62440396 -57304502 + AluJo SINE Alu 1 134 -178 281 290 32 0 chr13 62440433 62440526 -57304372 - MIR SINE MIR 0 262 167 216 128 21 21 chr13 62441364 62441411 -57303487 + CT-rich Low_complexity Low_complexity 2 48 0 243 0 0 0 chr13 62441457 62441484 -57303414 + (TG)n Simple_repeat Simple_repeat 1 27 0 413 208 100 8 chr13 62441495 62441625 -57303273 - L1MC4 LINE L1 -144 7898 7757 298 245 126 28 chr13 62441629 62441772 -57303126 - MER67D LTR ERV1 -3 511 355 * 1226 232 49 35 chr13 62441762 62441978 -57302920 - MER67C LTR ERV1 -301 409 185 12740 151 15 21 chr13 62441978 62444560 -57300338 + L1PA10 LINE L1 3024 5616 -552 2010 142 42 31 chr13 62444560 62444920 -57299978 + THE1B LTR MaLR 1 364 0 12740 151 15 21 chr13 62444920 62445467 -57299431 + L1PA10 LINE L1 5616 6164 -4 1226 232 49 35 chr13 62445467 62445595 -57299303 - MER67C LTR ERV1 -525 185 60 326 182 125 23 chr13 62445611 62445699 -57299199 - MER67D LTR ERV1 -405 109 13 414 233 142 23 chr13 62445721 62445940 -57298958 - L1MC4 LINE L1 -272 7770 7526 225 350 98 42 chr13 62445988 62446131 -57298767 - MIR SINE MIR -101 161 11 1112 187 20 0 chr13 62446354 62446557 -57298341 + L1PA16 LINE L1 5949 6155 -11 1635 235 79 4 chr13 62447370 62447889 -57297009 + L1MA9 LINE L1 4812 5369 -777 982 94 0 0 chr13 62447889 62448016 -57296882 + AluSq/x SINE Alu 1 127 -185 3347 223 64 22 chr13 62448017 62448889 -57296009 + L1MA9 LINE L1 5382 6290 -22 763 251 80 0 chr13 62448897 62449136 -57295762 + L1MEc LINE L1 640 897 -5499 1686 215 52 31 chr13 62450166 62450641 -57294257 + L1MA9 LINE L1 5719 6196 -116 23 0 0 0 chr13 62450664 62450687 -57294211 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 62450726 62450752 -57294146 + AT_rich Low_complexity Low_complexity 1 26 0 2211 104 3 0 chr13 62453125 62453422 -57291476 + AluSq SINE Alu 5 302 -11 382 376 41 6 chr13 62453507 62453677 -57291221 - L2 LINE L2 -250 3063 2888 6221 227 39 17 chr13 62453893 62455625 -57289273 + L1 LINE L1 2401 4169 -1977 2091 179 124 0 chr13 62456723 62457165 -57287733 - LOR1a LTR ERV1 0 497 1 452 305 46 13 chr13 62457602 62457753 -57287145 - MER110-int LTR ERV1 -742 3905 3750 183 156 0 0 chr13 62458626 62458658 -57286240 + (TAA)n Simple_repeat Simple_repeat 2 33 0 480 35 0 0 chr13 62458927 62458985 -57285913 + (TA)n Simple_repeat Simple_repeat 2 59 0 2958 148 22 4 chr13 62459081 62459569 -57285329 + LOR1a LTR ERV1 1 497 0 331 356 68 6 chr13 62459851 62460014 -57284884 - MER90 LTR ERV1 -23 552 380 292 129 113 0 chr13 62460033 62460095 -57284803 + MADE1 DNA Mariner 12 80 0 323 250 45 18 chr13 62460464 62460576 -57284322 + Tigger5 DNA MER2_type 2209 2323 0 25 0 0 0 chr13 62462041 62462066 -57282832 + AT_rich Low_complexity Low_complexity 1 25 0 1798 109 15 4 chr13 62463143 62463408 -57281490 - AluSp SINE Alu -15 298 31 2909 152 195 9 chr13 62463408 62463988 -57280910 - LTR12 LTR ERV1 0 688 1 419 111 0 14 chr13 62464390 62464462 -57280436 + (TTCCC)n Simple_repeat Simple_repeat 5 75 0 1530 161 0 0 chr13 62464464 62464700 -57280198 - AluSx SINE Alu -38 274 39 1711 223 62 14 chr13 62465902 62466338 -57278560 - MER65C LTR ERV1 -4 457 1 23 0 0 0 chr13 62466365 62466388 -57278510 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr13 62466550 62466589 -57278309 + AT_rich Low_complexity Low_complexity 1 39 0 45 34 0 0 chr13 62466625 62466684 -57278214 + AT_rich Low_complexity Low_complexity 1 59 0 6937 52 6 0 chr13 62467802 62468730 -57276168 - L1PA7 LINE L1 -3 6151 5228 869 88 0 32 chr13 62468730 62468844 -57276054 - AluSg/x SINE Alu -17 295 184 189 211 0 5 chr13 62468926 62468970 -57275928 - MIR SINE MIR -65 143 101 1773 158 3 0 chr13 62469790 62470074 -57274824 - AluJb SINE Alu -27 285 1 1916 108 11 3 chr13 62472469 62472756 -57272142 + AluSx SINE Alu 1 289 -23 192 77 0 0 chr13 62473611 62473637 -57271261 + (CA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr13 62474328 62474351 -57270547 + AT_rich Low_complexity Low_complexity 1 23 0 201 74 0 0 chr13 62474757 62474784 -57270114 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2055 123 7 13 chr13 62475261 62475562 -57269336 - AluSx SINE Alu -13 299 1 207 366 130 0 chr13 62476873 62476996 -57267902 + MIR SINE MIR 53 191 -71 228 56 139 0 chr13 62477222 62477258 -57267640 - MER53 DNA DNA 0 189 149 535 147 102 62 chr13 62477273 62477450 -57267448 - MER53 DNA DNA -3 186 3 2555 55 0 0 chr13 62478170 62478477 -57266421 + AluY SINE Alu 2 308 -3 22 70 0 0 chr13 62478695 62478738 -57266160 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 62480601 62480623 -57264275 + AT_rich Low_complexity Low_complexity 1 22 0 1451 138 4 9 chr13 62481065 62481296 -57263602 - AluJb SINE Alu -1 311 82 2345 93 0 0 chr13 62481304 62481615 -57263283 - AluY SINE Alu 0 311 1 610 155 0 0 chr13 62481615 62481712 -57263186 - AluJb SINE Alu -215 97 1 1574 251 55 51 chr13 62481832 62482363 -57262535 + MLT1E LTR MaLR 59 591 -2 21 0 0 0 chr13 62482824 62482845 -57262053 + AT_rich Low_complexity Low_complexity 1 21 0 582 211 64 0 chr13 62482859 62483015 -57261883 - L1MA8 LINE L1 -14 6277 6112 22 56 0 0 chr13 62483015 62483051 -57261847 + AT_rich Low_complexity Low_complexity 1 36 0 236 122 24 0 chr13 62483058 62483099 -57261799 + L1MA8 LINE L1 6056 6097 -194 21 57 0 0 chr13 62483299 62483334 -57261564 + AT_rich Low_complexity Low_complexity 1 35 0 288 0 0 0 chr13 62483485 62483517 -57261381 + (CA)n Simple_repeat Simple_repeat 2 33 0 211 254 42 28 chr13 62483693 62483764 -57261134 - MIR SINE MIR -32 230 159 204 214 0 0 chr13 62485197 62485239 -57259659 + (CA)n Simple_repeat Simple_repeat 2 43 0 279 0 0 0 chr13 62485512 62485543 -57259355 + (TC)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr13 62485542 62485564 -57259334 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 433 342 54 23 chr13 62486221 62486481 -57258417 + MLT1J2 LTR MaLR 38 305 -145 668 285 93 63 chr13 62486545 62486988 -57257910 - MLT1G1 LTR MaLR -43 506 15 260 223 88 101 chr13 62487021 62487169 -57257729 - MLT1G1-int LTR MaLR -21 1714 1569 390 121 0 0 chr13 62487390 62487456 -57257442 + (TG)n Simple_repeat Simple_repeat 1 66 0 858 306 38 36 chr13 62487573 62487965 -57256933 - L2 LINE L2 -657 2657 2265 437 385 11 0 chr13 62487965 62488152 -57256746 - L2 LINE L2 -1342 1972 1784 2051 119 3 3 chr13 62488736 62489029 -57255869 - AluSx SINE Alu -19 293 1 686 188 0 8 chr13 62489373 62489506 -57255392 - FLAM_C SINE Alu -11 132 1 1561 222 3 0 chr13 62490625 62490913 -57253985 - AluJo SINE Alu -23 289 1 180 163 0 0 chr13 62491129 62491172 -57253726 + (ATCG)n Simple_repeat Simple_repeat 2 44 0 590 219 16 0 chr13 62491984 62492107 -57252791 + FLAM_A SINE Alu 1 125 -8 25 0 0 0 chr13 62492860 62492885 -57252013 + AT_rich Low_complexity Low_complexity 1 25 0 6631 158 32 10 chr13 62492890 62493503 -57251395 - Tigger3b DNA MER2_type -1802 1226 628 2161 126 7 0 chr13 62493503 62493812 -57251086 - AluSq SINE Alu -2 311 1 6631 158 32 10 chr13 62493812 62494397 -57250501 - Tigger3b DNA MER2_type -2400 628 2 681 187 35 122 chr13 62494398 62494628 -57250270 + L1MC1 LINE L1 5623 5832 -501 1456 217 55 43 chr13 62495186 62495652 -57249246 + MER67C LTR ERV1 67 506 -8 1626 180 30 3 chr13 62495778 62496073 -57248825 + AluSx SINE Alu 1 303 -9 7092 166 79 50 chr13 62496189 62497837 -57247061 - pTR5 LTR ERV1 0 2438 743 284 327 70 13 chr13 62497860 62498016 -57246882 - MIR SINE MIR 0 262 98 21 57 0 0 chr13 62498099 62498134 -57246764 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 62498793 62498823 -57246075 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr13 62500836 62500865 -57244033 + AT_rich Low_complexity Low_complexity 1 29 0 582 291 24 6 chr13 62500865 62501030 -57243868 - FRAM SINE Alu -15 161 1 201 333 20 20 chr13 62502359 62502506 -57242392 + (CATATA)n Simple_repeat Simple_repeat 3 149 0 23 0 0 0 chr13 62503461 62503484 -57241414 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 62504147 62504169 -57240729 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 62505151 62505189 -57239709 + AT_rich Low_complexity Low_complexity 1 38 0 210 80 80 0 chr13 62505835 62505885 -57239013 + (TA)n Simple_repeat Simple_repeat 2 55 0 314 93 111 6 chr13 62505897 62506059 -57238839 + (TA)n Simple_repeat Simple_repeat 2 180 0 24 0 0 0 chr13 62506064 62506088 -57238810 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr13 62506276 62506317 -57238581 + AT_rich Low_complexity Low_complexity 1 41 0 1746 105 18 4 chr13 62506710 62506986 -57237912 - L1P LINE L1 -789 5357 5078 * 7572 112 14 13 chr13 62506985 62508942 -57235956 + L1PA8A LINE L1 3915 6128 -3 803 210 66 28 chr13 62509836 62510017 -57234881 - MER5A DNA MER1_type 0 189 2 185 327 18 0 chr13 62510017 62510068 -57234830 + L2 LINE L2 3005 3056 -257 201 122 24 24 chr13 62510474 62510515 -57234383 + (TA)n Simple_repeat Simple_repeat 1 41 0 2598 107 0 3 chr13 62511263 62511626 -57233272 - THE1B LTR MaLR 0 364 3 9756 115 40 39 chr13 62511628 62513201 -57231697 - THE1B-int LTR MaLR 0 1580 6 2117 168 8 6 chr13 62513206 62513569 -57231329 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr13 62513940 62513981 -57230917 + AT_rich Low_complexity Low_complexity 1 41 0 2379 76 0 3 chr13 62514173 62514477 -57230421 - AluY SINE Alu -8 303 1 1773 251 82 37 chr13 62516033 62517431 -57227467 - L1ME1 LINE L1 -65 6101 4639 2231 168 16 9 chr13 62517473 62517896 -57227002 - L1MA8 LINE L1 -277 6014 5589 4769 168 16 108 chr13 62517913 62520039 -57224859 - L1MA5A LINE L1 -3 6294 4193 895 282 53 36 chr13 62520046 62520123 -57224775 - L1ME1 LINE L1 -1513 4633 4559 3360 32 0 0 chr13 62520123 62520523 -57224375 - L1PA4 LINE L1 -3 6152 5753 895 282 53 36 chr13 62520523 62520969 -57223929 - L1ME1 LINE L1 -1587 4559 4101 546 264 45 13 chr13 62520978 62521133 -57223765 - MLT1A2 LTR MaLR 0 374 215 1748 201 22 15 chr13 62521144 62521553 -57223345 - L1MA8 LINE L1 -841 5305 4894 760 206 41 12 chr13 62521553 62521723 -57223175 + L1M2 LINE L1 5463 5637 -663 23 0 0 0 chr13 62521989 62522012 -57222886 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 62522118 62522139 -57222759 + AT_rich Low_complexity Low_complexity 1 21 0 1709 215 26 5 chr13 62522460 62522842 -57222056 - MLT1B LTR MaLR 0 390 1 510 46 0 0 chr13 62522962 62523027 -57221871 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 433 250 51 45 chr13 62523182 62523358 -57221540 - MER5B DNA MER1_type -1 177 1 2196 102 0 0 chr13 62523744 62524037 -57220861 + AluSg SINE Alu 1 293 -17 4322 78 16 12 chr13 62525695 62525992 -57218906 - L1P3 LINE L1 -377 5777 5483 2262 102 3 0 chr13 62525992 62526295 -57218603 - AluY SINE Alu -7 304 1 4322 78 16 12 chr13 62526295 62527021 -57217877 - L1P3 LINE L1 -671 5483 4756 2607 76 6 3 chr13 62527022 62527378 -57217520 + L1PA7 LINE L1 5791 6147 -7 21 71 0 0 chr13 62527378 62527420 -57217478 + AT_rich Low_complexity Low_complexity 1 42 0 2008 175 140 15 chr13 62528323 62528723 -57216175 - MER50 LTR ERV1 -23 711 262 1348 137 4 63 chr13 62528719 62528989 -57215909 + LTR1 LTR ERV1 532 785 0 * 261 347 0 0 chr13 62529280 62529355 -57215543 + HERVL LTR ERVL 1742 1816 -3838 1456 248 101 3 chr13 62529428 62529803 -57215095 + MER74C LTR ERVL 47 458 -2 362 343 54 29 chr13 62529803 62530042 -57214856 + HERVL LTR ERVL 1876 2120 -3644 5409 133 21 20 chr13 62530080 62530470 -57214428 - L1PA16 LINE L1 0 6166 5778 2304 88 0 0 chr13 62530470 62530765 -57214133 - AluY SINE Alu -16 295 1 5409 133 21 20 chr13 62530765 62531286 -57213612 - L1PA16 LINE L1 -388 5778 5254 1544 191 151 8 chr13 62533565 62533984 -57210914 - MER31A LTR ERV1 -5 656 1 203 127 36 73 chr13 62535309 62535364 -57209534 + T-rich Low_complexity Low_complexity 3 55 0 12509 214 45 21 chr13 62536673 62541460 -57203438 + L1MA4 LINE L1 2178 6844 -875 2187 99 0 0 chr13 62541460 62541790 -57203108 + AluSx SINE Alu 6 335 0 12509 214 45 21 chr13 62541790 62542091 -57202807 + L1MA4 LINE L1 6844 7136 -583 348 24 0 0 chr13 62542091 62542132 -57202766 + (CA)n Simple_repeat Simple_repeat 2 42 0 12509 214 45 21 chr13 62542132 62542627 -57202271 + L1MA4 LINE L1 7136 7715 -4 23 0 0 0 chr13 62542994 62543017 -57201881 + AT_rich Low_complexity Low_complexity 1 23 0 1902 147 85 15 chr13 62544207 62544547 -57200351 + THE1B LTR MaLR 1 364 0 1235 297 56 5 chr13 62544564 62544972 -57199926 + LTR53 LTR ERVL 39 467 -52 560 163 57 0 chr13 62544993 62545116 -57199782 + L1MA8 LINE L1 6162 6291 0 1908 197 22 0 chr13 62545285 62545641 -57199257 + MLT1A1 LTR MaLR 2 365 0 727 286 157 47 chr13 62545949 62547183 -57197715 - L1MC4 LINE L1 -599 7209 5930 2754 231 27 39 chr13 62547936 62549476 -57195422 - L1MD2 LINE L1 -396 6357 4838 1548 146 154 109 chr13 62549476 62549531 -57195367 - MER4A LTR ERV1 -2 662 611 2358 83 0 0 chr13 62549531 62549833 -57195065 + AluY SINE Alu 3 304 -7 1548 146 154 109 chr13 62549833 62550161 -57194737 - MER4A LTR ERV1 -53 611 262 529 133 20 20 chr13 62550162 62550260 -57194638 - MER4A LTR ERV1 -566 98 1 1687 271 95 30 chr13 62550261 62550808 -57194090 - L1MD2 LINE L1 -1699 4841 4226 2211 107 0 7 chr13 62550808 62551107 -57193791 - AluSx SINE Alu -15 297 1 1687 271 95 30 chr13 62551107 62551339 -57193559 - L1MD2 LINE L1 -2314 4226 4011 1616 158 37 87 chr13 62551347 62551728 -57193170 - MER4E LTR ERV1 0 779 418 1395 130 69 0 chr13 62551728 62551944 -57192954 - LTR12 LTR ERV1 -4 710 480 315 242 30 20 chr13 62551944 62552043 -57192855 - LTR30 LTR ERV1 -79 643 544 1859 72 0 129 chr13 62552043 62552361 -57192537 - LTR12 LTR ERV1 -437 277 1 2855 133 77 14 chr13 62552361 62552856 -57192042 - MER4D LTR ERV1 -377 526 1 674 282 37 30 chr13 62552860 62552979 -57191919 - L1MD2 LINE L1 -2540 4000 3883 706 194 8 0 chr13 62552979 62553108 -57191790 - FLAM_A SINE Alu -3 130 1 674 282 37 30 chr13 62553108 62553453 -57191445 - L1MD2 LINE L1 -2657 3883 3533 1829 119 164 75 chr13 62553453 62553824 -57191074 - MER4A LTR ERV1 0 664 261 553 155 10 10 chr13 62553825 62553922 -57190976 - MER4A LTR ERV1 -567 97 1 248 211 48 87 chr13 62553922 62554026 -57190872 - L1MD2 LINE L1 -3004 3536 3437 525 221 24 31 chr13 62554032 62554159 -57190739 - FRAM SINE Alu -15 161 36 599 283 60 22 chr13 62554165 62554483 -57190415 - L1MD2 LINE L1 -3114 3426 3097 1473 218 53 35 chr13 62554517 62554911 -57189987 - MLT1C LTR MaLR -29 438 38 1357 230 23 81 chr13 62554986 62555732 -57189166 - L1MD2 LINE L1 -3468 3072 2379 1675 211 34 3 chr13 62555732 62556059 -57188839 - MER2 DNA MER2_type 0 345 9 726 218 218 19 chr13 62556065 62556372 -57188526 - L1MD2 LINE L1 -4159 2381 2014 21 57 0 0 chr13 62557068 62557103 -57187795 + AT_rich Low_complexity Low_complexity 1 35 0 1838 151 0 22 chr13 62557290 62557602 -57187296 + AluSq SINE Alu 1 305 -8 38 61 0 0 chr13 62557779 62557845 -57187053 + AT_rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr13 62558137 62558158 -57186740 + AT_rich Low_complexity Low_complexity 1 21 0 477 331 25 45 chr13 62558541 62558786 -57186112 + MIR SINE MIR 9 248 -14 185 345 80 0 chr13 62558847 62558960 -57185938 + L2 LINE L2 3190 3311 -2 321 321 75 13 chr13 62559535 62559694 -57185204 - MIR SINE MIR -92 170 2 23 0 0 0 chr13 62560139 62560162 -57184736 + AT_rich Low_complexity Low_complexity 1 23 0 2200 183 34 10 chr13 62560213 62560596 -57184302 - MSTB LTR MaLR 0 426 31 1176 74 69 0 chr13 62560596 62560771 -57184127 + L1PA6 LINE L1 5968 6154 0 2200 183 34 10 chr13 62560771 62560796 -57184102 - MSTB LTR MaLR -395 31 8 7537 203 44 14 chr13 62560803 62562406 -57182492 - MSTB-int LTR MaLR 0 1651 1 1991 201 35 10 chr13 62562406 62562800 -57182098 - MSTB LTR MaLR 0 426 23 2252 115 0 0 chr13 62563177 62563489 -57181409 - AluSq SINE Alu -1 312 1 354 180 0 0 chr13 62563867 62563928 -57180970 - Tigger1 DNA MER2_type -17 2401 2341 591 10 62 0 chr13 62564363 62564459 -57180439 + (TA)n Simple_repeat Simple_repeat 2 103 0 352 267 0 0 chr13 62565045 62565131 -57179767 + MER34 LTR ERV1 1 86 -456 593 237 59 30 chr13 62565186 62565355 -57179543 + LTR48B LTR ERV1 471 644 0 186 103 0 0 chr13 62566593 62566622 -57178276 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr13 62566662 62566687 -57178211 + AT_rich Low_complexity Low_complexity 1 25 0 3587 210 85 10 chr13 62567690 62568336 -57176562 + L1PA16 LINE L1 4454 5050 -1116 351 0 0 0 chr13 62568336 62568375 -57176523 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3587 210 85 10 chr13 62568375 62568586 -57176312 + L1PA16 LINE L1 5050 5244 -922 1990 140 69 29 chr13 62568586 62568936 -57175962 + THE1B LTR MaLR 1 364 0 3587 210 85 10 chr13 62568936 62569029 -57175869 + L1PA16 LINE L1 5244 5456 -710 2634 143 0 7 chr13 62569094 62569519 -57175379 + L1PA16 LINE L1 5426 5847 -319 235 340 40 79 chr13 62570943 62571272 -57173626 + L2 LINE L2 1480 1795 -1519 207 0 0 0 chr13 62571287 62571310 -57173588 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2655 55 3 6 chr13 62571314 62571661 -57173237 - L1PA4 LINE L1 -1 6154 5809 21 0 0 0 chr13 62571837 62571858 -57173040 + AT_rich Low_complexity Low_complexity 1 21 0 633 236 0 0 chr13 62571858 62571981 -57172917 - FLAM_A SINE Alu -10 123 1 242 341 115 37 chr13 62571988 62572258 -57172640 + L2 LINE L2 3005 3295 -18 225 244 0 0 chr13 62574389 62574434 -57170464 + (TGG)n Simple_repeat Simple_repeat 3 47 0 186 331 49 28 chr13 62574437 62574579 -57170319 - MIR SINE MIR -34 228 84 26 0 0 0 chr13 62575078 62575104 -57169794 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr13 62576180 62576204 -57168694 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 62578669 62578699 -57166199 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 62579523 62579553 -57165345 + AT_rich Low_complexity Low_complexity 1 30 0 201 128 51 0 chr13 62579761 62579800 -57165098 + (CAAAT)n Simple_repeat Simple_repeat 5 45 0 339 294 22 11 chr13 62580157 62580249 -57164649 + MER5A DNA MER1_type 95 187 -2 1008 144 18 6 chr13 62580279 62580446 -57164452 + AluJb SINE Alu 6 174 -138 6776 175 6 11 chr13 62580446 62581709 -57163189 - L1P LINE L1 -1343 4803 3547 1007 255 33 36 chr13 62582471 62582804 -57162094 - MER93a LTR ERV1 -4 398 67 750 355 93 28 chr13 62582898 62583604 -57161294 + L2 LINE L2 819 1570 -1744 646 170 18 0 chr13 62583668 62583780 -57161118 + FRAM SINE Alu 60 173 -3 310 388 129 24 chr13 62583818 62584521 -57160377 + L2 LINE L2 2102 2878 -436 1403 259 57 39 chr13 62584551 62585061 -57159837 + LTR40a LTR ERVL 1 519 0 262 235 61 53 chr13 62585109 62585241 -57159657 + Charlie8 DNA MER1_type 71 203 -2214 640 227 7 7 chr13 62585381 62585531 -57159367 + Charlie8 DNA MER1_type 384 533 -1884 586 341 71 26 chr13 62585643 62585983 -57158915 + L2 LINE L2 2866 3220 -93 22 35 0 0 chr13 62586406 62586435 -57158463 + AT_rich Low_complexity Low_complexity 1 29 0 2150 89 0 7 chr13 62586488 62586803 -57158095 - AluSg SINE Alu 0 313 1 22 70 0 0 chr13 62587319 62587362 -57157536 + AT_rich Low_complexity Low_complexity 1 43 0 523 339 81 39 chr13 62587527 62587934 -57156964 - LTR16A LTR ERVL -11 439 16 2014 117 33 3 chr13 62588866 62589165 -57155733 + AluSx SINE Alu 1 308 -4 192 40 0 0 chr13 62589487 62589512 -57155386 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 238 220 0 0 chr13 62589528 62589578 -57155320 + A-rich Low_complexity Low_complexity 1 50 0 1632 173 71 37 chr13 62590705 62590992 -57153906 + MLT1A1 LTR MaLR 1 304 -61 2307 103 0 3 chr13 62590992 62591302 -57153596 + AluSx SINE Alu 1 309 -3 1632 173 71 37 chr13 62591302 62591367 -57153531 + MLT1A1 LTR MaLR 304 365 0 21 36 0 0 chr13 62591427 62591455 -57153443 + AT_rich Low_complexity Low_complexity 1 28 0 702 312 39 13 chr13 62591487 62591721 -57153177 + MIR SINE MIR 13 252 -10 249 227 82 36 chr13 62592307 62592417 -57152481 + MLT1J LTR MaLR 237 351 -160 2011 156 57 52 chr13 62592453 62592674 -57152224 - MSTA LTR MaLR -21 407 182 2285 122 0 0 chr13 62592674 62592985 -57151913 - AluSx SINE Alu -1 311 1 2011 156 57 52 chr13 62592985 62593168 -57151730 - MSTA LTR MaLR -246 182 1 2207 120 0 0 chr13 62594002 62594301 -57150597 + AluSq SINE Alu 1 299 -14 928 133 0 97 chr13 62594408 62594470 -57150428 + MER4E LTR ERV1 581 647 -119 2117 114 0 0 chr13 62594470 62594772 -57150126 + AluSx SINE Alu 3 304 0 928 133 0 97 chr13 62594772 62594903 -57149995 + MER4E LTR ERV1 647 756 -10 1725 177 24 6 chr13 62596496 62596829 -57148069 + MER44D DNA MER2_type 1 609 0 611 230 47 0 chr13 62596954 62597102 -57147796 + L1PB4 LINE L1 6002 6156 0 22 35 0 0 chr13 62597102 62597131 -57147767 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 62597390 62597420 -57147478 + AT_rich Low_complexity Low_complexity 1 30 0 5183 172 28 21 chr13 62598069 62599531 -57145367 + L1M2 LINE L1 4195 5658 -654 1500 110 0 0 chr13 62599549 62599758 -57145140 - MER41C-int LTR ERV1 -2404 5352 5144 * 1759 76 0 36 chr13 62599746 62599996 -57144902 - MER41C-int LTR ERV1 -3122 4634 4394 * 19857 108 38 6 chr13 62599991 62602951 -57141947 - MER41C-int LTR ERV1 -4701 3055 3 3206 133 72 0 chr13 62603037 62603554 -57141344 - MER41C LTR ERV1 0 554 1 2553 118 15 18 chr13 62603554 62603953 -57140945 - MER4B LTR ERV1 -210 400 3 32 0 0 0 chr13 62604386 62604418 -57140480 + AT_rich Low_complexity Low_complexity 1 32 0 303 49 0 0 chr13 62605516 62605557 -57139341 + (CA)n Simple_repeat Simple_repeat 2 42 0 469 266 0 57 chr13 62606574 62606732 -57138166 - MER52A LTR ERV1 0 1755 1607 670 265 31 69 chr13 62606744 62607004 -57137894 - MER52A LTR ERV1 -285 1470 1221 259 253 24 12 chr13 62606994 62607077 -57137821 - MER52A LTR ERV1 -455 1300 1217 * 845 252 150 15 chr13 62607151 62607486 -57137412 - LTR28 LTR ERV1 -410 610 322 2556 55 0 0 chr13 62607486 62607794 -57137104 + AluY SINE Alu 1 308 -3 845 252 150 15 chr13 62607794 62607971 -57136927 - LTR28 LTR ERV1 -698 322 1 539 323 69 5 chr13 62608109 62608326 -57136572 - MIR SINE MIR -30 232 2 996 183 100 77 chr13 62608340 62608691 -57136207 + MLT1A1 LTR MaLR 1 363 -2 2070 139 0 3 chr13 62608894 62609204 -57135694 + AluSx SINE Alu 1 309 -3 274 254 74 70 chr13 62609372 62609671 -57135227 + L1MC5 LINE L1 7013 7312 -649 240 86 0 0 chr13 62610917 62610952 -57133946 + (CA)n Simple_repeat Simple_repeat 2 36 0 421 144 56 0 chr13 62611778 62611868 -57133030 - LTR37A LTR ERV1 -9 417 323 27 49 0 0 chr13 62612573 62612614 -57132284 + AT_rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr13 62613675 62613698 -57131200 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 212 293 80 13 chr13 62615585 62615660 -57129238 + MIR SINE MIR 81 160 -102 23 33 0 0 chr13 62615699 62615729 -57129169 + AT_rich Low_complexity Low_complexity 1 30 0 1794 126 9 73 chr13 62615819 62616136 -57128762 - AluSx SINE Alu -15 297 1 1438 137 11 41 chr13 62617322 62617537 -57127361 - L1MA3 LINE L1 -8 6297 6090 1510 198 13 7 chr13 62617537 62617835 -57127063 - AluJb SINE Alu -12 300 1 1438 137 11 41 chr13 62617835 62617889 -57127009 - L1MA3 LINE L1 -215 6090 6036 2134 100 3 22 chr13 62618161 62618472 -57126426 - AluSg SINE Alu -5 305 1 454 193 0 70 chr13 62621303 62621417 -57123481 - FLAM_C SINE Alu -10 133 28 3720 146 96 43 chr13 62621417 62622825 -57122073 - pTR5 LTR ERV1 0 2606 1524 31 68 0 0 chr13 62623065 62623124 -57121774 + AT_rich Low_complexity Low_complexity 1 59 0 30 45 0 0 chr13 62623349 62623393 -57121505 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr13 62624166 62624188 -57120710 + AT_rich Low_complexity Low_complexity 1 22 0 30 55 0 27 chr13 62624364 62624412 -57120486 + AT_rich Low_complexity Low_complexity 1 48 -23 1703 164 3 7 chr13 62624412 62624704 -57120194 + AluJo SINE Alu 1 291 -21 30 55 0 27 chr13 62624704 62624728 -57120170 + AT_rich Low_complexity Low_complexity 48 71 0 527 278 12 18 chr13 62627056 62627225 -57117673 - MLT1I LTR MaLR -231 178 11 310 387 0 8 chr13 62627331 62627455 -57117443 + MER5B DNA MER1_type 54 176 -2 217 241 35 0 chr13 62627521 62627579 -57117319 + (CATGT)n Simple_repeat Simple_repeat 1 60 0 37 39 0 0 chr13 62628509 62628560 -57116338 + AT_rich Low_complexity Low_complexity 1 51 0 37 0 0 0 chr13 62628737 62628774 -57116124 + AT_rich Low_complexity Low_complexity 1 37 0 236 359 52 36 chr13 62629162 62629410 -57115488 + MIR SINE MIR 10 261 -1 22 0 0 0 chr13 62629618 62629640 -57115258 + AT_rich Low_complexity Low_complexity 1 22 0 326 325 88 0 chr13 62629820 62629980 -57114918 + MIR SINE MIR 87 260 -2 1668 160 6 63 chr13 62630884 62631215 -57113683 + AluJo SINE Alu 1 312 0 23 33 0 0 chr13 62631665 62631695 -57113203 + AT_rich Low_complexity Low_complexity 1 30 0 222 345 64 27 chr13 62632259 62632369 -57112529 + L2 LINE L2 3159 3272 0 27 29 0 0 chr13 62632587 62632621 -57112277 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr13 62632647 62632683 -57112215 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr13 62632814 62632837 -57112061 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 272 322 75 40 chr13 62633375 62633549 -57111349 + MIR SINE MIR 7 186 -76 2522 103 28 14 chr13 62633557 62633916 -57110982 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr13 62634660 62634681 -57110217 + AT_rich Low_complexity Low_complexity 1 21 0 2067 128 0 13 chr13 62636633 62636937 -57107961 - AluSx SINE Alu -12 300 1 229 284 95 0 chr13 62636986 62637060 -57107838 + MIR SINE MIR 162 242 -20 24 0 0 0 chr13 62637093 62637117 -57107781 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 62638019 62638048 -57106850 + AT_rich Low_complexity Low_complexity 1 29 0 350 293 34 83 chr13 62638637 62638842 -57106056 - MIR SINE MIR -37 225 31 2028 128 3 16 chr13 62639023 62639328 -57105570 + AluSx SINE Alu 1 301 -11 200 392 88 0 chr13 62639850 62639975 -57104923 - L2 LINE L2 0 3272 3137 21 71 0 0 chr13 62642658 62642700 -57102198 + AT_rich Low_complexity Low_complexity 1 42 0 580 266 122 18 chr13 62642718 62643004 -57101894 - L1MEc LINE L1 -1714 5851 5536 * 1606 210 15 22 chr13 62643001 62643401 -57101497 - L1M4 LINE L1 -4379 3186 2790 * 3357 256 46 45 chr13 62643392 62644627 -57100271 - L1M4 LINE L1 -5511 2054 130 840 273 92 70 chr13 62644627 62645169 -57099729 + MER41C LTR ERV1 1 554 0 3357 256 46 45 chr13 62645169 62645282 -57099616 - L1M4 LINE L1 -7435 130 19 1430 254 65 61 chr13 62645307 62646131 -57098767 - L1MEc LINE L1 -3047 4518 3691 4040 180 17 10 chr13 62646254 62647082 -57097816 - L1MA7 LINE L1 -2 6289 5456 5020 198 20 21 chr13 62647097 62648263 -57096635 + L1 LINE L1 3848 5012 -1134 413 246 30 30 chr13 62648277 62648480 -57096418 - L1MEc LINE L1 -4032 3714 3512 327 264 22 0 chr13 62648745 62648836 -57096062 - L1MEc LINE L1 -6220 827 735 2245 91 0 3 chr13 62648849 62649146 -57095752 + AluSc SINE Alu 2 297 -12 2665 183 22 15 chr13 62650952 62651498 -57093400 + L1P LINE L1 3177 3726 -2420 3484 251 43 44 chr13 62651504 62652892 -57092006 - L1PA12 LINE L1 -4867 2717 1 23 86 0 0 chr13 62652943 62653001 -57091897 + AT_rich Low_complexity Low_complexity 1 58 0 222 179 0 0 chr13 62653403 62653442 -57091456 + MIR SINE MIR 112 150 -112 21 95 0 0 chr13 62653527 62653590 -57091308 + AT_rich Low_complexity Low_complexity 1 63 0 264 273 0 0 chr13 62653859 62653925 -57090973 + MIR SINE MIR 139 204 -58 21 89 0 0 chr13 62654671 62654727 -57090171 + AT_rich Low_complexity Low_complexity 1 56 0 2145 125 0 0 chr13 62655149 62655454 -57089444 + AluSc SINE Alu 1 305 -4 342 0 0 0 chr13 62656235 62656273 -57088625 + (CA)n Simple_repeat Simple_repeat 1 38 0 351 239 18 18 chr13 62656352 62656465 -57088433 - Charlie7 DNA MER1_type -2454 158 46 244 381 76 8 chr13 62656937 62657055 -57087843 - L2 LINE L2 -13 3259 3134 206 118 0 0 chr13 62657133 62657167 -57087731 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 6525 198 135 17 chr13 62657414 62658779 -57086119 - MER52A LTR ERV1 0 1755 230 637 318 95 64 chr13 62658801 62658852 -57086046 - L2 LINE L2 -557 2757 2709 1969 154 7 0 chr13 62658852 62659144 -57085754 - AluSg SINE Alu -16 294 1 637 318 95 64 chr13 62659144 62659480 -57085418 - L2 LINE L2 -605 2709 2347 273 57 0 0 chr13 62659480 62659515 -57085383 + (TG)n Simple_repeat Simple_repeat 2 36 0 637 318 95 64 chr13 62659515 62659654 -57085244 - L2 LINE L2 -967 2347 2214 296 80 22 88 chr13 62659662 62659799 -57085099 + (TA)n Simple_repeat Simple_repeat 2 129 0 334 151 34 50 chr13 62659823 62659942 -57084956 + (TA)n Simple_repeat Simple_repeat 1 117 0 195 69 0 0 chr13 62659942 62659971 -57084927 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 364 35 26 chr13 62660012 62660240 -57084658 - L2 LINE L2 -1219 2095 1866 3662 166 66 21 chr13 62660556 62661187 -57083711 + L1MA9 LINE L1 5506 6180 -132 270 0 0 0 chr13 62661187 62661217 -57083681 + (CA)n Simple_repeat Simple_repeat 1 30 0 3662 166 66 21 chr13 62661217 62661357 -57083541 + L1MA9 LINE L1 6180 6312 0 2015 113 0 0 chr13 62662782 62663048 -57081850 + AluSg SINE Alu 1 266 -44 26 64 0 0 chr13 62663149 62663196 -57081702 + AT_rich Low_complexity Low_complexity 1 47 0 187 286 184 20 chr13 62663478 62663625 -57081273 + MIR SINE MIR 88 258 -4 472 335 18 12 chr13 62665681 62665845 -57079053 + L2 LINE L2 3108 3272 0 186 270 0 0 chr13 62666213 62666287 -57078611 + CT-rich Low_complexity Low_complexity 3 76 0 778 211 74 92 chr13 62666405 62666606 -57078292 - MER92C LTR ERV1 -27 527 324 2291 219 20 25 chr13 62666606 62667168 -57077730 - MER89 LTR ERV1 0 559 1 778 211 74 92 chr13 62667168 62667432 -57077466 - MER92C LTR ERV1 -230 324 1 24 32 0 0 chr13 62668055 62668086 -57076812 + AT_rich Low_complexity Low_complexity 1 31 0 478 152 0 57 chr13 62668164 62668269 -57076629 - AluSp SINE Alu -76 237 139 1432 186 40 48 chr13 62668275 62668673 -57076225 + LTR37A LTR ERV1 32 426 0 24 32 0 0 chr13 62669058 62669089 -57075809 + AT_rich Low_complexity Low_complexity 1 31 0 303 321 50 46 chr13 62669129 62669242 -57075656 - HAL1b LINE L1 -561 787 671 2596 55 0 0 chr13 62669242 62669552 -57075346 - AluY SINE Alu -1 310 1 303 321 50 46 chr13 62669552 62669656 -57075242 - HAL1b LINE L1 -677 671 569 507 271 53 7 chr13 62669671 62669927 -57074971 + MER89 LTR ERV1 1 368 -191 689 212 55 85 chr13 62669969 62670095 -57074803 - LTR52 LTR ERVL -192 229 112 186 43 0 0 chr13 62670095 62670118 -57074780 + (TTAAA)n Simple_repeat Simple_repeat 5 27 0 689 212 55 85 chr13 62670118 62670227 -57074671 - LTR52 LTR ERVL -309 112 1 181 146 0 36 chr13 62670232 62670287 -57074611 + (TAAAAA)n Simple_repeat Simple_repeat 3 55 0 1732 203 81 70 chr13 62670296 62670940 -57073958 + L1MDa LINE L1 1231 1881 -4659 1401 167 55 82 chr13 62670939 62671157 -57073741 + L1MD1 LINE L1 5845 6051 -191 * 1624 103 4 26 chr13 62671157 62671430 -57073468 + L1MA1 LINE L1 6036 6302 0 1401 167 55 82 chr13 62671430 62671576 -57073322 + L1MD1 LINE L1 6051 6199 -43 26 0 0 0 chr13 62671582 62671608 -57073290 + AT_rich Low_complexity Low_complexity 1 26 0 2110 68 0 0 chr13 62671707 62671985 -57072913 + AluY SINE Alu 1 278 -33 231 114 0 0 chr13 62671987 62672031 -57072867 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 241 176 81 54 chr13 62672149 62672223 -57072675 - L1MC4 LINE L1 -41 8001 7926 234 285 85 0 chr13 62672346 62672511 -57072387 - L1MC5 LINE L1 -178 7783 7605 749 176 15 0 chr13 62672566 62672697 -57072201 - AluSg/x SINE Alu -8 301 169 527 253 93 43 chr13 62672776 62673077 -57071821 - L1MC5 LINE L1 -386 7575 7260 229 152 45 15 chr13 62673213 62673279 -57071619 + (TTAA)n Simple_repeat Simple_repeat 1 68 0 2606 108 5 0 chr13 62673953 62674350 -57070548 - L1PA13 LINE L1 0 6163 5765 673 244 82 79 chr13 62674372 62674712 -57070186 - L1MC5 LINE L1 -1001 6960 6620 1834 149 7 0 chr13 62675041 62675352 -57069546 + AluSx SINE Alu 1 313 0 21 0 0 0 chr13 62675370 62675391 -57069507 + AT_rich Low_complexity Low_complexity 1 21 0 957 131 106 40 chr13 62675896 62676095 -57068803 + L1PA15 LINE L1 5941 6152 -13 22 0 0 0 chr13 62676235 62676257 -57068641 + AT_rich Low_complexity Low_complexity 1 22 0 83 36 0 0 chr13 62676781 62676892 -57068006 + AT_rich Low_complexity Low_complexity 1 111 0 30 45 0 0 chr13 62677087 62677131 -57067767 + AT_rich Low_complexity Low_complexity 1 44 0 2129 144 44 3 chr13 62677140 62677500 -57067398 + THE1C LTR MaLR 1 375 0 219 300 43 0 chr13 62678520 62678590 -57066308 + MIR SINE MIR 58 130 -78 542 236 110 16 chr13 62679721 62679889 -57065009 - MER5A DNA MER1_type 0 189 4 28 0 0 0 chr13 62682277 62682305 -57062593 + AT_rich Low_complexity Low_complexity 1 28 0 2068 115 0 40 chr13 62684194 62684505 -57060393 + AluSx SINE Alu 3 302 -10 189 74 0 0 chr13 62684505 62684532 -57060366 + (TG)n Simple_repeat Simple_repeat 2 28 0 1161 111 11 28 chr13 62684551 62684731 -57060167 + AluSp SINE Alu 123 299 -14 249 238 12 50 chr13 62684914 62684994 -57059904 + MER69 DNA AcHobo 2450 2526 0 476 105 13 13 chr13 62685187 62685263 -57059635 - MER4B LTR ERV1 -138 472 397 3172 143 57 13 chr13 62685263 62685531 -57059367 - MER41C LTR ERV1 0 554 299 1893 137 31 0 chr13 62685531 62685823 -57059075 + AluSx SINE Alu 1 301 -11 3172 143 57 13 chr13 62685823 62686085 -57058813 - MER41C LTR ERV1 -255 299 1 646 83 0 0 chr13 62686085 62686169 -57058729 - MER41C-int LTR ERV1 0 7756 7673 3225 172 36 9 chr13 62686169 62686826 -57058072 + L1MA9 LINE L1 5638 6312 0 302 276 171 6 chr13 62687160 62687341 -57057557 - MLT1H1 LTR MaLR -34 521 311 368 289 122 41 chr13 62687627 62687824 -57057074 + MIR SINE MIR 23 235 -27 21 0 0 0 chr13 62687835 62687856 -57057042 + AT_rich Low_complexity Low_complexity 1 21 0 1200 253 59 18 chr13 62688325 62688665 -57056233 + MLT1A1 LTR MaLR 1 354 -11 2765 185 70 45 chr13 62689562 62690136 -57054762 + LTR69 LTR ERVL 1 588 0 2279 66 0 10 chr13 62690924 62691226 -57053672 + AluY SINE Alu 5 303 -8 1831 70 0 12 chr13 62691231 62691472 -57053426 + AluSc SINE Alu 72 309 0 2278 150 93 3 chr13 62691843 62692230 -57052668 + MSTC LTR MaLR 1 422 -6 961 201 18 14 chr13 62692470 62692689 -57052209 + L1MB1 LINE L1 5946 6165 -3 325 365 0 11 chr13 62693689 62693867 -57051031 + (CATA)n Simple_repeat Simple_repeat 2 177 0 217 143 0 54 chr13 62694610 62694623 -57050275 + (TAAAA)n Simple_repeat Simple_repeat 5 17 -40 2166 114 0 3 chr13 62694623 62694920 -57049978 + AluSq SINE Alu 1 296 -17 217 143 0 54 chr13 62694920 62694962 -57049936 + (TAAAA)n Simple_repeat Simple_repeat 17 57 0 27 0 0 0 chr13 62695089 62695116 -57049782 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr13 62695207 62695250 -57049648 + AT_rich Low_complexity Low_complexity 1 43 0 413 283 121 49 chr13 62695453 62695848 -57049050 - L1 LINE L1 -2028 4118 3690 36 91 0 0 chr13 62696184 62696283 -57048615 + AT_rich Low_complexity Low_complexity 1 99 0 21 57 0 0 chr13 62696650 62696685 -57048213 + AT_rich Low_complexity Low_complexity 1 35 0 1067 206 49 4 chr13 62697392 62697635 -57047263 - L1MA7 LINE L1 -352 5939 5686 1363 199 26 7 chr13 62697635 62697941 -57046957 + L1MA7 LINE L1 5975 6286 -5 62 46 0 9 chr13 62697946 62697977 -57046921 + AT_rich Low_complexity Low_complexity 1 31 -76 2056 120 6 32 chr13 62697977 62698293 -57046605 + AluSx SINE Alu 1 308 -4 62 46 0 9 chr13 62698293 62698369 -57046529 + AT_rich Low_complexity Low_complexity 31 107 0 27 96 0 0 chr13 62698702 62698785 -57046113 + AT_rich Low_complexity Low_complexity 1 83 0 22 80 0 0 chr13 62699424 62699474 -57045424 + AT_rich Low_complexity Low_complexity 1 50 0 292 203 13 25 chr13 62701231 62701310 -57043588 + GA-rich Low_complexity Low_complexity 2 79 0 297 342 44 51 chr13 62702334 62702492 -57042406 + MIR3 SINE MIR 14 170 -38 29 47 0 0 chr13 62703323 62703366 -57041532 + AT_rich Low_complexity Low_complexity 1 43 0 240 368 60 8 chr13 62703934 62704067 -57040831 - MIR SINE MIR -60 202 63 347 285 48 102 chr13 62704101 62704287 -57040611 + MER5B DNA MER1_type 3 178 0 21 36 0 0 chr13 62705048 62705076 -57039822 + AT_rich Low_complexity Low_complexity 1 28 0 180 125 0 0 chr13 62705604 62705636 -57039262 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 306 0 0 0 chr13 62706231 62706265 -57038633 + (TA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr13 62707050 62707081 -57037817 + AT_rich Low_complexity Low_complexity 1 31 0 1948 147 0 0 chr13 62707188 62707480 -57037418 - AluSx SINE Alu -18 294 3 1052 182 15 0 chr13 62707574 62707777 -57037121 + MER2 DNA MER2_type 1 206 -139 203 200 0 18 chr13 62707777 62707832 -57037066 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 26 0 0 0 chr13 62707907 62707933 -57036965 + AT_rich Low_complexity Low_complexity 1 26 0 1266 203 126 58 chr13 62707950 62708379 -57036519 - MLT1C LTR MaLR -9 458 1 181 238 24 95 chr13 62709533 62709659 -57035239 - L3 LINE CR1 -629 948 832 1110 83 13 13 chr13 62710624 62710780 -57034118 + L1PA7 LINE L1 5996 6151 -3 22 35 0 0 chr13 62710810 62710839 -57034059 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 62711185 62711206 -57033692 + AT_rich Low_complexity Low_complexity 1 21 0 255 254 14 0 chr13 62711845 62711916 -57032982 - L1ME2 LINE L1 -203 5961 5890 321 292 17 17 chr13 62712387 62712420 -57032478 - L1MA10 LINE L1 0 6334 6302 1798 265 64 43 chr13 62712420 62713702 -57031196 - L1ME1 LINE L1 -24 6211 4895 2072 128 0 0 chr13 62713717 62714013 -57030885 - AluSx SINE Alu -16 296 1 1021 244 97 44 chr13 62714044 62714541 -57030357 + LTR28 LTR ERV1 1 1231 -138 560 282 48 4 chr13 62714582 62714809 -57030089 - L1ME1 LINE L1 -3691 2524 2288 1151 268 80 4 chr13 62714822 62715284 -57029614 - L1ME1 LINE L1 -4259 2137 1641 998 318 43 17 chr13 62715315 62715778 -57029120 - L1ME1 LINE L1 -5801 595 121 22 0 0 0 chr13 62715988 62716010 -57028888 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 62716352 62716374 -57028524 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr13 62716545 62716590 -57028308 + AT_rich Low_complexity Low_complexity 1 45 0 212 341 74 30 chr13 62716647 62716782 -57028116 - MIR3 SINE MIR -1 207 67 213 39 0 0 chr13 62717539 62717565 -57027333 + (CA)n Simple_repeat Simple_repeat 1 26 0 737 152 80 109 chr13 62717691 62717993 -57026905 - L1MA9 LINE L1 -10 6302 6010 405 0 0 0 chr13 62718660 62718705 -57026193 + (TG)n Simple_repeat Simple_repeat 2 46 0 787 169 34 17 chr13 62718956 62719134 -57025764 - MER53 DNA DNA -1 188 8 2081 121 0 19 chr13 62719134 62719449 -57025449 - AluSc SINE Alu 0 309 1 30 0 0 0 chr13 62720355 62720385 -57024513 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 62721253 62721274 -57023624 + AT_rich Low_complexity Low_complexity 1 21 0 353 191 44 0 chr13 62721628 62721696 -57023202 + L2 LINE L2 3189 3259 -54 1481 34 0 0 chr13 62723649 62723845 -57021053 + L1PA4 LINE L1 5968 6163 0 2092 77 14 11 chr13 62723916 62724202 -57020696 - AluSc SINE Alu -22 287 1 241 277 117 30 chr13 62724265 62724442 -57020456 + L1ME3A LINE L1 4577 4780 -1366 2013 109 0 3 chr13 62724442 62724746 -57020152 + AluY SINE Alu 1 303 -8 241 277 117 30 chr13 62724746 62724799 -57020099 + L1ME3A LINE L1 4780 4827 -1319 818 150 75 12 chr13 62724906 62725066 -57019832 + THE1C LTR MaLR 1 170 -205 4316 124 89 102 chr13 62725075 62726328 -57018570 - pTR5 LTR ERV1 -143 2295 744 926 145 34 44 chr13 62726329 62726540 -57018358 + THE1C LTR MaLR 181 375 0 832 248 85 62 chr13 62726719 62727273 -57017625 + L1ME3A LINE L1 5410 5996 -168 34 55 0 0 chr13 62727877 62727932 -57016966 + AT_rich Low_complexity Low_complexity 1 55 0 1531 186 36 7 chr13 62728091 62728365 -57016533 - AluJo SINE Alu -30 282 1 25 0 0 0 chr13 62729207 62729232 -57015666 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr13 62730239 62730273 -57014625 + AT_rich Low_complexity Low_complexity 1 34 0 264 257 0 40 chr13 62731418 62731492 -57013406 + L2 LINE L2 3228 3298 -15 232 275 161 34 chr13 62732103 62732252 -57012646 - LTR41 LTR ERVL -6 767 600 439 213 6 98 chr13 62732580 62732763 -57012135 - LTR41 LTR ERVL -590 183 18 1433 233 70 6 chr13 62733233 62733576 -57011322 + MLT1A1 LTR MaLR 1 365 0 292 301 103 15 chr13 62733607 62733743 -57011155 - MIR SINE MIR -105 157 10 23 33 0 0 chr13 62733828 62733858 -57011040 + AT_rich Low_complexity Low_complexity 1 30 0 900 186 18 63 chr13 62733950 62734171 -57010727 - AluJo SINE Alu -14 298 88 724 251 55 5 chr13 62734975 62735174 -57009724 - MER58B DNA MER1_type -28 313 105 735 213 0 38 chr13 62736774 62736934 -57007964 + FRAM SINE Alu 1 154 -12 1526 314 83 39 chr13 62737279 62738375 -57006523 + L2 LINE L2 2060 3208 -105 284 266 25 0 chr13 62739007 62739086 -57005812 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 260 341 23 47 chr13 62739836 62739965 -57004933 - MIR3 SINE MIR -19 189 64 21 57 0 0 chr13 62740010 62740045 -57004853 + AT_rich Low_complexity Low_complexity 1 35 0 215 330 71 0 chr13 62740701 62740813 -57004085 + L2 LINE L2 3175 3294 -19 24 67 0 0 chr13 62741372 62741417 -57003481 + AT_rich Low_complexity Low_complexity 1 45 0 329 386 90 6 chr13 62741826 62742147 -57002751 - L2 LINE L2 -809 2505 2158 1771 132 54 4 chr13 62742397 62742677 -57002221 + AluSx SINE Alu 7 300 -12 232 258 0 62 chr13 62742925 62743022 -57001876 + L1MC4 LINE L1 6614 6704 -1338 278 167 17 0 chr13 62743023 62743083 -57001815 + (TA)n Simple_repeat Simple_repeat 1 61 0 346 196 21 0 chr13 62743243 62743340 -57001558 + (TA)n Simple_repeat Simple_repeat 2 100 0 1321 196 98 13 chr13 62743341 62743657 -57001241 + MER7A DNA MER2_type 3 343 -3 251 200 18 0 chr13 62743774 62743829 -57001069 - MER58 DNA MER1_type -4 2416 2361 180 0 0 0 chr13 62743841 62743861 -57001037 + (TTG)n Simple_repeat Simple_repeat 2 21 0 186 171 0 0 chr13 62744016 62744057 -57000841 + (TG)n Simple_repeat Simple_repeat 2 42 0 29 60 0 0 chr13 62744355 62744405 -57000493 + AT_rich Low_complexity Low_complexity 1 50 0 2078 124 0 3 chr13 62744524 62744822 -57000076 + AluSc SINE Alu 1 297 -12 26 0 0 0 chr13 62745187 62745213 -56999685 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr13 62745427 62745448 -56999450 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 62745528 62745552 -56999346 + AT_rich Low_complexity Low_complexity 1 24 0 401 304 48 82 chr13 62746392 62746662 -56998236 + MIR SINE MIR 2 262 0 24 32 0 0 chr13 62747346 62747377 -56997521 + AT_rich Low_complexity Low_complexity 1 31 0 862 221 29 5 chr13 62747388 62747592 -56997306 - MER2 DNA MER2_type -135 210 2 1668 66 0 9 chr13 62748539 62748751 -56996147 + AluSc SINE Alu 97 306 -3 231 299 25 113 chr13 62748778 62748880 -56996018 + MIR SINE MIR 57 134 -128 1759 111 111 4 chr13 62748880 62749159 -56995739 + AluSg SINE Alu 1 309 -1 231 299 25 113 chr13 62749159 62749260 -56995638 + MIR SINE MIR 134 242 -20 1164 247 40 16 chr13 62749261 62749706 -56995192 - MER68 LTR ERV1 -2 560 15 1153 125 112 24 chr13 62749752 62750025 -56994873 - THE1B LTR MaLR 0 375 1 743 304 53 25 chr13 62750976 62751407 -56993491 - HsTC2 DNA Tc2 -42 1856 1238 2720 244 95 53 chr13 62751489 62752502 -56992396 + L1M3d LINE L1 27 1081 -4810 9511 237 63 44 chr13 62752559 62752987 -56991911 + L1M3 LINE L1 1016 1434 -4970 2001 111 29 0 chr13 62752987 62753267 -56991631 - AluSq SINE Alu -16 297 10 9511 237 63 44 chr13 62753267 62756227 -56988671 + L1M3 LINE L1 1434 4534 -1870 180 0 0 0 chr13 62756227 62756247 -56988651 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 9511 237 63 44 chr13 62756247 62757591 -56987307 + L1M3 LINE L1 4534 5851 -553 205 267 27 13 chr13 62757967 62758042 -56986856 + (TA)n Simple_repeat Simple_repeat 1 76 0 * 235 204 0 0 chr13 62758041 62758085 -56986813 + GA-rich Low_complexity Low_complexity 2 45 0 1998 286 135 32 chr13 62758104 62758847 -56986051 - HsTC2 DNA Tc2 -782 1116 242 2438 78 0 3 chr13 62758847 62759156 -56985742 + AluSc SINE Alu 1 308 -1 1998 286 135 32 chr13 62759156 62759410 -56985488 - HsTC2 DNA Tc2 -1656 242 16 1473 174 152 0 chr13 62760173 62760483 -56984415 - LTR18A LTR ERVL 0 357 1 2340 223 66 12 chr13 62761289 62761867 -56983031 + MER76 LTR ERV 80 688 0 296 222 25 25 chr13 62762032 62762113 -56982785 + GA-rich Low_complexity Low_complexity 1 81 0 2057 135 0 7 chr13 62762546 62762842 -56982056 + AluSx SINE Alu 5 298 -14 306 304 157 0 chr13 62764661 62764776 -56980122 - L2 LINE L2 0 3272 3140 40 59 0 0 chr13 62765126 62765194 -56979704 + AT_rich Low_complexity Low_complexity 1 68 0 24 32 0 0 chr13 62765394 62765425 -56979473 + AT_rich Low_complexity Low_complexity 1 31 0 352 243 39 19 chr13 62765545 62765648 -56979250 - LTR40a LTR ERVL 0 519 415 23 68 0 0 chr13 62765653 62765697 -56979201 + AT_rich Low_complexity Low_complexity 1 44 0 1106 261 27 20 chr13 62765730 62766029 -56978869 - HERVL40 LTR ERVL -2661 2869 2569 * 1378 249 41 25 chr13 62766005 62766371 -56978527 - HERVL40 LTR ERVL -3107 2423 2052 663 268 16 16 chr13 62766369 62766552 -56978346 - HERVL40 LTR ERVL -3910 1620 1438 * 22 35 0 0 chr13 62766560 62766589 -56978309 + AT_rich Low_complexity Low_complexity 1 29 0 895 294 119 20 chr13 62766603 62766947 -56977951 - LTR40a LTR ERVL -127 392 15 207 232 0 0 chr13 62767867 62767923 -56976975 + CT-rich Low_complexity Low_complexity 2 57 0 29 47 0 0 chr13 62768061 62768104 -56976794 + AT_rich Low_complexity Low_complexity 1 43 0 2074 120 131 16 chr13 62768385 62768767 -56976131 - MSTA LTR MaLR 0 428 3 405 39 0 0 chr13 62769479 62769530 -56975368 + (TG)n Simple_repeat Simple_repeat 2 52 0 28 29 0 0 chr13 62769600 62769635 -56975263 + AT_rich Low_complexity Low_complexity 1 35 0 1420 258 46 15 chr13 62769850 62770307 -56974591 - LTR65 LTR ERV1 -18 651 181 436 285 67 6 chr13 62770448 62770627 -56974271 - HAL1b LINE L1 -821 527 338 26 0 0 0 chr13 62770627 62770653 -56974245 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr13 62771708 62771729 -56973169 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 62773869 62773893 -56971005 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 62774072 62774095 -56970803 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 62775056 62775084 -56969814 + AT_rich Low_complexity Low_complexity 1 28 0 312 275 100 8 chr13 62775361 62775481 -56969417 - MSTC LTR MaLR -297 131 1 1929 206 89 24 chr13 62775609 62775747 -56969151 - MER82 DNA MER2_type -1 652 524 2001 126 0 13 chr13 62775747 62776048 -56968850 - AluSq SINE Alu -16 297 1 1929 206 89 24 chr13 62776048 62776473 -56968425 - MER82 DNA MER2_type -129 524 1 1134 268 89 27 chr13 62776863 62777461 -56967437 - L1M4 LINE L1 -797 5349 4715 24 0 0 0 chr13 62777720 62777744 -56967154 + AT_rich Low_complexity Low_complexity 1 24 0 1637 187 13 66 chr13 62778064 62778369 -56966529 + MER46B DNA MER2_type 3 161 -2570 540 252 16 0 chr13 62778369 62778492 -56966406 + FLAM_C SINE Alu 3 127 -6 1637 187 13 66 chr13 62778492 62778565 -56966333 + MER46B DNA MER2_type 161 236 0 211 271 0 0 chr13 62778567 62778615 -56966283 + (TG)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr13 62779242 62779274 -56965624 + AT_rich Low_complexity Low_complexity 1 32 0 219 323 0 0 chr13 62780183 62780248 -56964650 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 377 429 42 8 chr13 62780428 62780813 -56964085 - L3 LINE CR1 -989 588 191 21 0 0 0 chr13 62781405 62781426 -56963472 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 62781852 62781887 -56963011 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr13 62781943 62781987 -56962911 + AT_rich Low_complexity Low_complexity 1 44 0 757 261 128 0 chr13 62782118 62782329 -56962569 + MER8 DNA MER2_type 2 239 0 26 30 0 0 chr13 62784263 62784296 -56960602 + AT_rich Low_complexity Low_complexity 1 33 0 12717 240 31 27 chr13 62784470 62784809 -56960089 - L1PA16 LINE L1 -5 7599 7263 1816 98 52 101 chr13 62784809 62785135 -56959763 - AluSx SINE Alu -2 310 1 12717 240 31 27 chr13 62785135 62786420 -56958478 - L1PA16 LINE L1 -341 7263 5984 225 0 0 0 chr13 62786420 62786445 -56958453 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 12717 240 31 27 chr13 62786445 62790234 -56954664 - L1PA16 LINE L1 -1620 5984 2189 355 298 58 44 chr13 62790559 62790784 -56954114 - L1PA16 LINE L1 -5278 2296 2069 735 234 19 0 chr13 62790812 62790970 -56953928 - MER2 DNA MER2_type -184 161 1 196 341 58 36 chr13 62791070 62791208 -56953690 - L2 LINE L2 -234 3038 2898 332 313 0 0 chr13 62791289 62791388 -56953510 - L2 LINE L2 -572 2742 2644 401 179 32 0 chr13 62791733 62791828 -56953070 + L1MA7 LINE L1 6193 6290 -1 27 0 0 0 chr13 62791880 62791907 -56952991 + AT_rich Low_complexity Low_complexity 1 27 0 345 221 39 0 chr13 62792038 62792115 -56952783 - MER116 DNA Mariner 0 80 1 2035 101 39 0 chr13 62792131 62792417 -56952481 - AluSc SINE Alu -12 297 1 289 285 106 8 chr13 62792961 62793084 -56951814 + MIR SINE MIR 95 229 -33 278 372 7 29 chr13 62793273 62793410 -56951488 + L2 LINE L2 3180 3313 0 25 51 0 0 chr13 62794708 62794747 -56950151 + AT_rich Low_complexity Low_complexity 1 39 0 1711 183 0 30 chr13 62796043 62796344 -56948554 + AluSx SINE Alu 1 292 -20 1450 205 3 21 chr13 62796386 62796697 -56948201 - AluJo SINE Alu 0 306 1 238 293 0 0 chr13 62796823 62796881 -56948017 - L2 LINE L2 0 3272 3215 1041 276 7 32 chr13 62796955 62797238 -56947660 - LTR40a LTR ERVL 0 519 244 1276 210 12 35 chr13 62797292 62797630 -56947268 - L1MB8 LINE L1 -6 6172 5843 493 234 136 16 chr13 62797630 62797855 -56947043 - LTR40a LTR ERVL -267 252 3 468 349 54 28 chr13 62798120 62798472 -56946426 - L2 LINE L2 -389 2925 2565 913 228 87 98 chr13 62798642 62799111 -56945787 - MLT2C2 LTR ERVL 0 464 1 1977 123 0 29 chr13 62799507 62799815 -56945083 + AluSg SINE Alu 1 299 -11 327 315 105 21 chr13 62800553 62800696 -56944202 + MIR SINE MIR 25 179 -83 1093 141 6 0 chr13 62800784 62800947 -56943951 - AluSc SINE Alu -9 300 137 875 136 43 0 chr13 62801078 62801240 -56943658 - L1MA5 LINE L1 -2 6298 6130 554 247 29 6 chr13 62801240 62801410 -56943488 - MLT2B1 LTR ERVL -346 174 1 267 149 50 56 chr13 62801546 62801654 -56943244 - L1MA5 LINE L1 -169 6131 6028 182 225 12 0 chr13 62801707 62801787 -56943111 + (TA)n Simple_repeat Simple_repeat 2 82 0 23 33 0 0 chr13 62805146 62805176 -56939722 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 62805245 62805275 -56939623 + AT_rich Low_complexity Low_complexity 1 30 0 25 112 0 0 chr13 62805296 62805412 -56939486 + AT_rich Low_complexity Low_complexity 1 116 0 753 61 0 0 chr13 62805736 62805835 -56939063 + (TCCA)n Simple_repeat Simple_repeat 1 99 0 608 76 0 11 chr13 62806087 62806179 -56938719 + (TCCA)n Simple_repeat Simple_repeat 1 91 0 337 85 78 23 chr13 62807744 62807873 -56937025 + (TATAA)n Simple_repeat Simple_repeat 1 136 0 3156 249 47 45 chr13 62807879 62809689 -56935209 - L1P5 LINE L1 -419 5732 3921 1270 258 63 52 chr13 62809687 62809941 -56934957 - L1MEc LINE L1 -5544 852 602 * 2292 97 0 0 chr13 62809941 62810252 -56934646 - AluY SINE Alu 0 311 1 1270 258 63 52 chr13 62810252 62810540 -56934358 - L1MEc LINE L1 -5794 602 304 4266 167 0 8 chr13 62810593 62811300 -56933598 + HUERS-P3 LTR ERV1 2016 2716 -6203 893 162 11 11 chr13 62811311 62811490 -56933408 - L1MA8 LINE L1 -101 6190 6012 2797 13 0 0 chr13 62812472 62812783 -56932115 - AluYa5 SINE Alu 0 311 1 1698 114 98 0 chr13 62812891 62813145 -56931753 - AluSx SINE Alu -20 292 14 219 100 0 50 chr13 62813900 62813940 -56930958 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 21 71 0 0 chr13 62814739 62814781 -56930117 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 62815213 62815234 -56929664 + AT_rich Low_complexity Low_complexity 1 21 0 794 339 122 38 chr13 62816056 62817041 -56927857 + L2 LINE L2 819 1886 -1428 1298 183 0 25 chr13 62817077 62817312 -56927586 - AluJo SINE Alu -13 299 71 202 328 66 16 chr13 62817420 62817542 -56927356 + L2 LINE L2 3119 3246 -67 586 310 67 19 chr13 62817874 62818186 -56926712 + LTR16A LTR ERVL 51 374 -76 1237 339 75 21 chr13 62818284 62819111 -56925787 + HERV16 LTR ERVL 22 893 -4103 272 287 155 29 chr13 62819151 62819325 -56925573 + HERV16 LTR ERVL 967 1162 -3834 * 404 353 31 5 chr13 62819324 62819528 -56925370 + ERVL LTR ERVL 4446 4672 -1003 219 273 18 0 chr13 62819586 62819641 -56925257 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 21 36 0 0 chr13 62819817 62819845 -56925053 + AT_rich Low_complexity Low_complexity 1 28 0 388 268 211 33 chr13 62820030 62820243 -56924655 + LTR41 LTR ERVL 510 760 -13 314 253 36 0 chr13 62822311 62822394 -56922504 + MIR3 SINE MIR 118 203 -5 705 192 8 0 chr13 62822555 62822685 -56922213 + FLAM_C SINE Alu 3 133 0 231 310 82 13 chr13 62823551 62823709 -56921189 + L1MEd LINE L1 562 730 -5389 21 0 0 0 chr13 62823752 62823773 -56921125 + AT_rich Low_complexity Low_complexity 1 21 0 410 214 147 142 chr13 62823804 62824192 -56920706 + MLT1A2 LTR MaLR 1 390 0 1139 272 196 40 chr13 62824204 62824862 -56920036 - LTR41 LTR ERVL -6 767 7 282 315 50 31 chr13 62825200 62825559 -56919339 + L1MEd LINE L1 2621 2986 -3143 380 301 22 16 chr13 62825819 62826002 -56918896 + LTR67 LTR ERVL 372 555 -2 218 361 50 17 chr13 62826376 62826495 -56918403 + MIR SINE MIR 28 150 -112 32 43 0 0 chr13 62826982 62827028 -56917870 + AT_rich Low_complexity Low_complexity 1 46 0 2629 250 49 21 chr13 62827464 62828324 -56916574 + L1MB7 LINE L1 5293 6176 -8 543 189 16 16 chr13 62828587 62828709 -56916189 + L1MC5 LINE L1 7792 7913 -48 25 65 0 0 chr13 62828719 62828765 -56916133 + AT_rich Low_complexity Low_complexity 1 46 0 230 356 122 0 chr13 62831097 62831187 -56913711 - MIR SINE MIR -130 132 32 505 301 60 18 chr13 62831247 62831583 -56913315 - L1M4 LINE L1 -2469 3677 3328 23 78 0 0 chr13 62832584 62832635 -56912263 + AT_rich Low_complexity Low_complexity 1 51 0 852 325 84 34 chr13 62832703 62833236 -56911662 - L2 LINE L2 -1227 2087 1528 634 252 44 40 chr13 62833368 62833642 -56911256 - L1 LINE L1 -2712 3434 3160 1638 210 27 22 chr13 62833644 62834054 -56910844 + L1MEd LINE L1 3462 3873 -2256 4753 144 53 39 chr13 62834058 62835039 -56909859 + L1PA16 LINE L1 5157 6157 -9 28 29 0 0 chr13 62835516 62835551 -56909347 + AT_rich Low_complexity Low_complexity 1 35 0 583 239 51 31 chr13 62835956 62836302 -56908596 - LTR40b LTR ERVL 0 462 3 210 191 0 0 chr13 62838490 62838537 -56906361 + GA-rich Low_complexity Low_complexity 21 67 0 2337 171 85 103 chr13 62838682 62839654 -56905244 + L1MA7 LINE L1 5164 6113 -178 6471 144 49 18 chr13 62839654 62840833 -56904065 + Tigger3b DNA MER2_type 3 1218 -13 811 133 57 0 chr13 62840840 62840998 -56903900 + L1MA7 LINE L1 6123 6289 -2 24 0 0 0 chr13 62841178 62841202 -56903696 + AT_rich Low_complexity Low_complexity 1 24 0 577 287 99 36 chr13 62842681 62843123 -56901775 - L1MEc LINE L1 -4788 1608 1139 1060 297 96 27 chr13 62843237 62843897 -56901001 - L1MEc LINE L1 -5320 885 181 1399 279 16 16 chr13 62843937 62844226 -56900672 - MER110 LTR ERV1 -7 484 193 1991 142 3 0 chr13 62844226 62844529 -56900369 - AluSx SINE Alu -8 304 1 1399 279 16 16 chr13 62844529 62844665 -56900233 - MER110 LTR ERV1 -297 194 59 2150 109 6 6 chr13 62845414 62845727 -56899171 - AluSq SINE Alu 0 313 1 2702 211 47 7 chr13 62847977 62848654 -56896244 - MER67C LTR ERV1 -3 707 4 294 185 37 0 chr13 62848741 62848822 -56896076 + (TATG)n Simple_repeat Simple_repeat 2 85 0 478 215 38 174 chr13 62848822 62849115 -56895783 - MLT2B1 LTR ERVL -40 480 228 651 192 86 0 chr13 62849255 62849406 -56895492 - MLT2D LTR ERVL -250 164 1 333 0 0 0 chr13 62850551 62850588 -56894310 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chr13 62850915 62850958 -56893940 + AT_rich Low_complexity Low_complexity 1 43 0 35 54 0 0 chr13 62851298 62851354 -56893544 + AT_rich Low_complexity Low_complexity 1 56 0 331 271 47 0 chr13 62851385 62851470 -56893428 - MIR SINE MIR -9 253 165 1946 114 7 0 chr13 62851471 62851777 -56893121 + AluSg SINE Alu 1 308 0 1916 167 43 0 chr13 62851795 62852124 -56892774 - MER7A DNA MER2_type 0 346 6 464 291 43 47 chr13 62853860 62854094 -56890804 + MIR SINE MIR 28 260 -2 362 313 99 15 chr13 62854209 62854340 -56890558 + L3 LINE CR1 1417 1558 -19 193 278 0 56 chr13 62855177 62855249 -56889649 - L2 LINE L2 0 3313 3246 45 75 0 0 chr13 62855993 62856087 -56888811 + AT_rich Low_complexity Low_complexity 1 94 0 45 34 0 0 chr13 62857201 62857260 -56887638 + AT_rich Low_complexity Low_complexity 1 59 0 2093 123 7 0 chr13 62857696 62857988 -56886910 + AluSp SINE Alu 4 297 -16 1343 306 65 17 chr13 62859323 62859809 -56885089 + L1ME3A LINE L1 5410 5934 -236 1524 161 4 0 chr13 62859809 62860063 -56884835 - AluSq SINE Alu -58 255 1 1343 306 65 17 chr13 62860063 62860210 -56884688 + L1ME3A LINE L1 5934 6073 -97 24 53 0 0 chr13 62860426 62860464 -56884434 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr13 62860991 62861034 -56883864 + AT_rich Low_complexity Low_complexity 1 43 0 29 84 0 0 chr13 62862081 62862152 -56882746 + AT_rich Low_complexity Low_complexity 1 71 0 252 325 82 24 chr13 62862993 62863199 -56881699 + LTR33 LTR ERVL 304 521 0 2075 132 3 0 chr13 62863655 62863965 -56880933 + AluSx SINE Alu 1 311 -1 245 282 64 27 chr13 62864358 62864468 -56880430 - MLT1J1 LTR MaLR -11 435 322 408 338 0 13 chr13 62864528 62864682 -56880216 - MLT1J1 LTR MaLR -292 154 3 405 0 0 0 chr13 62865096 62865141 -56879757 + (CA)n Simple_repeat Simple_repeat 2 46 0 2123 61 13 58 chr13 62865293 62865606 -56879292 - AluY SINE Alu -12 299 1 3517 188 20 4 chr13 62865633 62866368 -56878530 + L1MB3 LINE L1 5434 6180 -3 35 41 0 0 chr13 62866640 62866689 -56878209 + AT_rich Low_complexity Low_complexity 1 49 0 234 0 0 0 chr13 62867814 62867840 -56877058 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr13 62868792 62868827 -56876071 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 62868909 62868938 -56875960 + AT_rich Low_complexity Low_complexity 1 29 0 240 59 0 0 chr13 62868996 62869030 -56875868 + (TA)n Simple_repeat Simple_repeat 2 35 0 225 307 60 24 chr13 62869061 62869227 -56875671 - L1ME LINE L1 -444 5677 5506 2132 81 4 0 chr13 62871004 62871327 -56873571 + AluSg SINE Alu 7 330 0 21 0 0 0 chr13 62872721 62872742 -56872156 + AT_rich Low_complexity Low_complexity 1 21 0 1579 132 8 0 chr13 62873117 62873352 -56871546 - Tigger5 DNA MER2_type -1 2322 2086 201 326 99 52 chr13 62874292 62874675 -56870223 - L2 LINE L2 -1216 2098 1698 2422 62 3 3 chr13 62875276 62875584 -56869314 - AluY SINE Alu -3 308 1 259 378 6 13 chr13 62875684 62875840 -56869058 - L2 LINE L2 -2430 884 730 485 385 20 8 chr13 62876275 62876524 -56868374 - MIR SINE MIR 0 262 11 1253 299 22 11 chr13 62876793 62877161 -56867737 - LTR16C LTR ERVL -4 487 116 3536 186 82 4 chr13 62878616 62879396 -56865502 - L1MB1 LINE L1 -31 5961 5121 1665 237 66 31 chr13 62879391 62880775 -56864123 - L1MB1 LINE L1 -2753 3217 1694 * 389 168 2 0 chr13 62880791 62880859 -56864039 - AluS SINE Alu -243 60 1 2110 271 59 47 chr13 62880860 62881082 -56863816 - L1MB1 LINE L1 -4723 1168 950 2242 60 22 35 chr13 62881082 62881396 -56863502 - AluY SINE Alu -1 310 1 2110 271 59 47 chr13 62881396 62882552 -56862346 - L1MB1 LINE L1 -4941 950 1 21 0 0 0 chr13 62882881 62882902 -56861996 + AT_rich Low_complexity Low_complexity 1 21 0 30606 117 21 59 chr13 62884349 62888610 -56856288 - L1P3 LINE L1 -621 5551 1572 2015 119 0 0 chr13 62888610 62888887 -56856011 + AluSg SINE Alu 31 307 -3 30606 117 21 59 chr13 62888887 62890392 -56854506 - L1P3 LINE L1 -4600 1572 12 295 265 68 41 chr13 62890484 62890631 -56854267 + MIR SINE MIR 112 262 0 22 0 0 0 chr13 62890808 62890830 -56854068 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr13 62891327 62891367 -56853531 + AT_rich Low_complexity Low_complexity 1 40 0 230 357 0 0 chr13 62892164 62892234 -56852664 + MER45 DNA AcHobo 2 71 -969 374 292 28 28 chr13 62892602 62892746 -56852152 - LTR16B LTR ERVL 0 464 321 309 222 0 0 chr13 62893021 62893084 -56851814 + MER90 LTR ERV1 150 212 -402 437 288 48 7 chr13 62893157 62893303 -56851595 + MIR SINE MIR 96 247 -15 306 0 0 0 chr13 62893489 62893523 -56851375 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2010 135 0 3 chr13 62893537 62893826 -56851072 - AluSq SINE Alu -25 288 1 1245 273 89 42 chr13 62893841 62894534 -56850364 - MER20B DNA MER1_type -1 782 57 41 66 0 0 chr13 62895070 62895146 -56849752 + AT_rich Low_complexity Low_complexity 1 76 0 28 29 0 0 chr13 62895328 62895363 -56849535 + AT_rich Low_complexity Low_complexity 1 35 0 2072 136 0 3 chr13 62895641 62895942 -56848956 + AluSx SINE Alu 1 300 -12 26 50 0 0 chr13 62896128 62896168 -56848730 + AT_rich Low_complexity Low_complexity 1 40 0 8041 204 32 34 chr13 62897072 62899920 -56844978 + L1MA4A LINE L1 1093 3936 -2912 5174 171 55 37 chr13 62899901 62901674 -56843224 + L1MA4A LINE L1 5175 6998 -7 * 317 301 20 52 chr13 62901848 62902001 -56842897 + MER77 LTR ERV1 66 213 -392 648 273 62 102 chr13 62902019 62902375 -56842523 + MER21B LTR ERV1 149 480 -383 1221 176 104 62 chr13 62902375 62902807 -56842091 + LTR7 LTR ERV1 1 450 0 648 273 62 102 chr13 62902807 62902962 -56841936 + MER21B LTR ERV1 480 640 -223 1600 234 51 3 chr13 62903072 62903423 -56841475 - MLT1A2 LTR MaLR 0 374 7 236 208 35 157 chr13 62903451 62903648 -56841250 - LTR28 LTR ERV1 0 1020 848 487 220 72 34 chr13 62903660 62903827 -56841071 - LTR1B LTR ERV1 -333 493 341 426 239 213 19 chr13 62903900 62904055 -56840843 - LTR1 LTR ERV1 -568 217 33 2810 174 36 6 chr13 62904061 62904629 -56840269 - HUERS-P2 LTR ERV1 0 3088 2467 * 3105 213 24 24 chr13 62904628 62905337 -56839561 - HUERS-P2 LTR ERV1 -1707 1381 673 465 230 7 72 chr13 62905354 62905493 -56839405 - HUERS-P2 LTR ERV1 -2957 131 2 719 247 115 52 chr13 62905687 62906127 -56838771 - LTR1B LTR ERV1 -328 498 49 349 298 69 0 chr13 62907123 62907254 -56837644 + MIR SINE MIR 95 234 -28 551 333 44 31 chr13 62907261 62907423 -56837475 - MIR SINE MIR -6 256 89 2138 181 67 19 chr13 62907423 62907492 -56837406 - LTR47A LTR ERVL 0 452 388 1981 14 0 0 chr13 62907492 62907714 -56837184 + AluYa5 SINE Alu 90 311 0 2138 181 67 19 chr13 62907714 62908075 -56836823 - LTR47A LTR ERVL -64 388 1 551 333 44 31 chr13 62908075 62908137 -56836761 - MIR SINE MIR -173 89 29 24 53 0 0 chr13 62910543 62910581 -56834317 + AT_rich Low_complexity Low_complexity 1 38 0 4730 156 27 1 chr13 62910787 62911594 -56833304 - Tigger1 DNA MER2_type 0 2418 1591 1617 168 30 20 chr13 62911598 62911902 -56832996 - Tigger1 DNA MER2_type -2111 307 1 3900 219 19 47 chr13 62911902 62912118 -56832780 + L1MC1 LINE L1 4338 4558 -1775 1496 223 67 9 chr13 62912118 62912463 -56832435 + MLT1A1 LTR MaLR 1 365 0 3900 219 19 47 chr13 62912463 62913939 -56830959 + L1MC1 LINE L1 4558 5983 -350 533 291 11 48 chr13 62913955 62914144 -56830754 + MSTD LTR MaLR 214 395 -1 729 300 20 12 chr13 62914156 62914403 -56830495 - MIR SINE MIR -3 259 11 1923 171 122 10 chr13 62915169 62915554 -56829344 - MSTA LTR MaLR 0 428 1 22 70 0 0 chr13 62915716 62915759 -56829139 + AT_rich Low_complexity Low_complexity 1 43 0 2837 184 31 20 chr13 62916397 62916947 -56827951 - MER21A LTR ERV1 0 931 376 1218 182 91 0 chr13 62916952 62917194 -56827704 - MER21A LTR ERV1 -667 264 1 27 0 0 0 chr13 62917413 62917440 -56827458 + AT_rich Low_complexity Low_complexity 1 27 0 496 138 0 0 chr13 62917964 62918044 -56826854 - MADE1 DNA Mariner 0 80 1 28 79 0 0 chr13 62918608 62918671 -56826227 + AT_rich Low_complexity Low_complexity 1 63 0 278 358 9 9 chr13 62918700 62918809 -56826089 - L2 LINE L2 0 3313 3205 619 304 80 18 chr13 62918810 62919194 -56825704 - MLT1F1 LTR MaLR -59 508 1 250 292 10 62 chr13 62919215 62919311 -56825587 - L2 LINE L2 -559 2755 2665 342 156 42 21 chr13 62919385 62919481 -56825417 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 1342 309 50 45 chr13 62919493 62920166 -56824732 + L1M4b LINE L1 100 776 -6083 * 1885 268 42 3 chr13 62920161 62920804 -56824094 + L1M4b LINE L1 1679 2346 -4613 789 245 52 32 chr13 62920847 62921096 -56823802 + MLT2B1 LTR ERVL 1 254 -266 1608 163 78 51 chr13 62921359 62921733 -56823165 + LTR10A LTR ERV1 165 548 -61 667 264 6 0 chr13 62921756 62921919 -56822979 + MLT2B1 LTR ERVL 309 472 -48 17185 195 30 9 chr13 62921946 62925196 -56819702 + ERVL-B1 LTR ERVL 863 4252 -1512 3241 188 77 3 chr13 62925193 62925858 -56819040 + ERVL-B1 LTR ERVL 5044 5757 -7 * 1128 247 118 20 chr13 62925858 62926214 -56818684 + MLT2B1 LTR ERVL 1 391 -129 699 274 59 5 chr13 62926823 62927027 -56817871 - MER58A DNA MER1_type -8 216 2 249 269 15 0 chr13 62927894 62927961 -56816937 + CT-rich Low_complexity Low_complexity 2 69 0 595 206 23 8 chr13 62928398 62928529 -56816369 + MLT1A2 LTR MaLR 242 374 0 1382 284 40 13 chr13 62928685 62929136 -56815762 - MLT1C LTR MaLR -4 463 1 440 319 8 0 chr13 62929168 62929287 -56815611 - MIR SINE MIR -106 156 37 24 32 0 0 chr13 62929820 62929851 -56815047 + AT_rich Low_complexity Low_complexity 1 31 0 268 275 43 14 chr13 62929918 62929987 -56814911 + L2 LINE L2 3200 3270 -43 1138 321 133 20 chr13 62930273 62930956 -56813942 + L2 LINE L2 2425 3179 -134 224 30 30 0 chr13 62930964 62930997 -56813901 + (TA)n Simple_repeat Simple_repeat 1 34 0 1700 168 3 20 chr13 62930997 62931289 -56813609 - AluJo SINE Alu -23 289 3 325 312 194 15 chr13 62931588 62931928 -56812970 + MLT1L LTR MaLR 23 423 -192 25 0 0 0 chr13 62932291 62932316 -56812582 + AT_rich Low_complexity Low_complexity 1 25 0 470 302 98 29 chr13 62933632 62933995 -56810903 + L1MEd LINE L1 789 1177 -4952 525 356 42 26 chr13 62934007 62934392 -56810506 - ERVL LTR ERVL -4623 1141 751 2294 73 3 0 chr13 62934406 62934706 -56810192 - AluY SINE Alu -10 301 1 23 46 6 0 chr13 62935041 62935126 -56809772 + AT_rich Low_complexity Low_complexity 1 44 0 626 236 25 19 chr13 62935711 62935872 -56809026 - LTR41 LTR ERVL -611 162 1 30 0 0 0 chr13 62935882 62935912 -56808986 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr13 62936165 62936208 -56808690 + AT_rich Low_complexity Low_complexity 1 43 0 452 254 129 5 chr13 62937968 62938192 -56806706 - MER69 DNA AcHobo -338 2188 1937 38 39 0 0 chr13 62938827 62938879 -56806019 + AT_rich Low_complexity Low_complexity 1 52 0 1526 167 14 48 chr13 62938935 62939256 -56805642 - AluSx SINE Alu 0 311 1 503 331 155 21 chr13 62939870 62940426 -56804472 - L2 LINE L2 0 3313 2683 460 318 86 67 chr13 62940504 62941038 -56803860 - L2 LINE L2 -273 3040 2443 1823 166 36 116 chr13 62941902 62942461 -56802437 - MER67D LTR ERV1 0 514 1 184 346 192 0 chr13 62944369 62944473 -56800425 - L2 LINE L2 0 3313 3190 21 0 0 0 chr13 62945099 62945120 -56799778 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 62945293 62945322 -56799576 + AT_rich Low_complexity Low_complexity 1 29 0 2511 53 0 0 chr13 62946673 62946974 -56797924 - AluY SINE Alu -10 301 1 1607 185 92 0 chr13 62947528 62947842 -56797056 + MER2 DNA MER2_type 2 344 0 2442 65 0 0 chr13 62948686 62948995 -56795903 + AluY SINE Alu 3 311 0 24 0 0 0 chr13 62949118 62949142 -56795756 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 62950149 62950177 -56794721 + AT_rich Low_complexity Low_complexity 1 28 0 46 33 0 0 chr13 62950288 62950348 -56794550 + AT_rich Low_complexity Low_complexity 1 60 0 5572 142 4 5 chr13 62950985 62951905 -56792993 - L1P LINE L1 -1088 5058 4140 4880 99 10 0 chr13 62951901 62952577 -56792321 + L1PA10 LINE L1 5443 6125 -43 * 26 93 0 0 chr13 62953568 62953643 -56791255 + AT_rich Low_complexity Low_complexity 1 75 0 546 304 128 50 chr13 62954649 62955021 -56789877 + L2 LINE L2 2631 3026 -287 639 234 0 0 chr13 62955374 62955502 -56789396 + FLAM_A SINE Alu 1 128 -5 423 310 105 48 chr13 62955856 62956691 -56788207 + HAL1 LINE L1 818 1700 -807 770 124 0 0 chr13 62957658 62957771 -56787127 - AluSg/x SINE Alu -7 302 190 667 357 60 19 chr13 63057771 63058085 -56686813 + L2 LINE L2 1044 1370 -1944 1913 166 0 3 chr13 63058109 63058417 -56686481 - AluSx SINE Alu -3 309 3 4666 186 47 23 chr13 63058456 63060020 -56684878 - L1MA9 LINE L1 -2 6310 4709 314 313 40 56 chr13 63060136 63060150 -56684748 - L2 LINE L2 -2332 982 969 8926 191 13 24 chr13 63060150 63062768 -56682130 + L1PA13 LINE L1 3527 6163 0 314 313 40 56 chr13 63062768 63063002 -56681896 - L2 LINE L2 -2345 969 738 22 0 0 0 chr13 63063195 63063217 -56681681 + AT_rich Low_complexity Low_complexity 1 22 0 882 147 31 0 chr13 63063357 63063520 -56681378 - MER73 LTR ERVL -469 175 8 * 1638 273 92 57 chr13 63063508 63065018 -56679880 - Zaphod DNA AcHobo -1514 2517 955 737 302 35 6 chr13 63065014 63065355 -56679543 + L1ME3A LINE L1 5591 5941 -229 * 669 289 12 28 chr13 63065623 63066012 -56678886 + MLT1D LTR MaLR 35 501 -4 24 0 0 0 chr13 63066828 63066852 -56678046 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr13 63066975 63067019 -56677879 + AT_rich Low_complexity Low_complexity 1 44 0 368 218 141 0 chr13 63067347 63067425 -56677473 - 5S rRNA rRNA -31 90 2 382 273 81 35 chr13 63067436 63067696 -56677202 + L1ME LINE L1 5530 5801 -320 1755 157 7 0 chr13 63067766 63068046 -56676852 + AluSx SINE Alu 18 299 -13 204 235 26 26 chr13 63068206 63068321 -56676577 + (TAA)n Simple_repeat Simple_repeat 1 115 0 1875 236 0 8 chr13 63068463 63068840 -56676058 + MER52A LTR ERV1 1382 1755 0 260 109 0 36 chr13 63068987 63069042 -56675856 + (CATA)n Simple_repeat Simple_repeat 2 54 0 248 301 165 23 chr13 63070166 63070299 -56674599 - MER5A DNA MER1_type 0 189 38 31 0 0 0 chr13 63081187 63081218 -56663680 + AT_rich Low_complexity Low_complexity 1 31 0 31 44 0 0 chr13 63081750 63081795 -56663103 + AT_rich Low_complexity Low_complexity 1 45 0 23 92 0 0 chr13 63082382 63082447 -56662451 + AT_rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr13 63092275 63092297 -56652601 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 63100753 63100784 -56644114 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 63100806 63100828 -56644070 + AT_rich Low_complexity Low_complexity 1 22 0 6078 139 62 18 chr13 63101992 63103102 -56641796 + HUERS-P1 LTR ERV1 2109 3267 -2996 1057 186 31 0 chr13 63103394 63103588 -56641310 - MER41-int LTR ERV1 -3651 2295 2096 197 159 23 0 chr13 63104394 63104438 -56640460 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 290 299 6 17 chr13 63104442 63104658 -56640240 + (TA)n Simple_repeat Simple_repeat 1 213 0 23 33 0 0 chr13 63105120 63105150 -56639748 + AT_rich Low_complexity Low_complexity 1 30 0 2276 93 0 3 chr13 63105303 63105593 -56639305 - AluSx SINE Alu -13 299 11 23 54 0 0 chr13 63109156 63109193 -56635705 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 63111143 63111166 -56633732 + AT_rich Low_complexity Low_complexity 1 23 0 990 207 7 33 chr13 63111972 63112243 -56632655 - L1 LINE L1 -3002 3144 2881 22 0 0 0 chr13 63112321 63112343 -56632555 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 63112710 63112739 -56632159 + AT_rich Low_complexity Low_complexity 1 29 0 723 126 8 0 chr13 63113213 63113332 -56631566 + AluSg/x SINE Alu 176 295 -17 316 380 58 29 chr13 63113499 63113878 -56631020 + HERVL LTR ERVL 2083 2472 -3182 21 0 0 0 chr13 63113881 63113902 -56630996 + AT_rich Low_complexity Low_complexity 1 21 0 2136 165 0 5 chr13 63113902 63114271 -56630627 - L1PB1 LINE L1 -3 6148 5782 316 179 26 0 chr13 63114271 63114349 -56630549 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 328 336 9 0 chr13 63114652 63114762 -56630136 + MLT1G LTR MaLR 10 120 -470 821 231 89 10 chr13 63114764 63114967 -56629931 + MER58A DNA MER1_type 6 224 0 1505 262 87 22 chr13 63114968 63115418 -56629480 + MLT1G LTR MaLR 112 590 0 634 289 39 35 chr13 63115587 63115843 -56629055 - MIR SINE MIR -1 261 5 21 36 0 0 chr13 63116321 63116349 -56628549 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 63120322 63120343 -56624555 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr13 63120683 63120736 -56624162 + AT_rich Low_complexity Low_complexity 1 53 0 206 383 0 21 chr13 63123210 63123304 -56621594 + MIR SINE MIR 19 110 -98 6724 190 27 5 chr13 63123539 63124204 -56620694 + L1PA15-16 LINE L1 9 664 -6185 426 39 0 0 chr13 63124204 63124256 -56620642 + (TG)n Simple_repeat Simple_repeat 2 53 0 6724 190 27 5 chr13 63124256 63124863 -56620035 + L1PA15-16 LINE L1 664 1256 -5593 204 364 110 13 chr13 63125593 63125747 -56619151 - L2 LINE L2 -2814 500 332 2106 119 3 0 chr13 63125795 63126088 -56618810 + AluSg SINE Alu 10 303 -7 367 223 7 122 chr13 63126324 63126463 -56618435 - L2 LINE L2 0 3313 3191 2767 192 58 5 chr13 63126568 63127316 -56617582 + L1P3 LINE L1 1 670 -5205 25 31 0 0 chr13 63131553 63131585 -56613313 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr13 63132725 63132758 -56612140 + AT_rich Low_complexity Low_complexity 1 33 0 985 129 15 69 chr13 63133567 63133769 -56611129 - MSTA LTR MaLR -237 191 1 526 272 8 0 chr13 63133769 63133894 -56611004 - MER2 DNA MER2_type -219 126 1 26 30 0 0 chr13 63134040 63134073 -56610825 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr13 63134116 63134154 -56610744 + AT_rich Low_complexity Low_complexity 1 38 0 1594 218 80 49 chr13 63134298 63134788 -56610110 + MLT1D LTR MaLR 1 505 0 6333 30 4 0 chr13 63135815 63136658 -56608240 - L1PA4 LINE L1 -135 6020 5175 588 304 5 16 chr13 63136829 63137013 -56607885 - L1MC/D LINE L1 -2181 5627 5446 1756 226 2 31 chr13 63138068 63138515 -56606383 + L1 LINE L1 4166 4599 -1547 25 0 0 0 chr13 63139926 63139951 -56604947 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr13 63140259 63140287 -56604611 + (TG)n Simple_repeat Simple_repeat 2 29 0 3613 147 41 24 chr13 63140295 63140996 -56603902 - L1MA4 LINE L1 -5 6295 5583 1496 196 48 6 chr13 63141219 63141556 -56603342 + L1MC2 LINE L1 5984 6334 -10 1279 137 156 48 chr13 63142725 63142995 -56601903 - AluSg1 SINE Alu 0 309 11 516 103 13 0 chr13 63143289 63143367 -56601531 + MADE1 DNA Mariner 1 79 -1 239 245 21 21 chr13 63143461 63143555 -56601343 + (TAA)n Simple_repeat Simple_repeat 3 96 0 288 53 0 0 chr13 63144350 63144388 -56600510 + (TG)n Simple_repeat Simple_repeat 1 38 0 1153 264 124 57 chr13 63145485 63145790 -56599108 - L1ME1 LINE L1 0 6961 6678 2154 79 0 21 chr13 63145790 63146080 -56598818 + AluY SINE Alu 1 284 -27 1153 264 124 57 chr13 63146080 63146422 -56598476 - L1ME1 LINE L1 -283 6678 6360 1767 146 7 0 chr13 63146422 63146702 -56598196 - AluSx SINE Alu -3 309 28 1153 264 124 57 chr13 63146702 63146837 -56598061 - L1ME1 LINE L1 -601 6360 6236 1555 198 7 10 chr13 63146837 63147145 -56597753 - AluJb SINE Alu -5 307 1 1153 264 124 57 chr13 63147145 63147207 -56597691 - L1ME1 LINE L1 -725 6236 6058 255 248 50 0 chr13 63147233 63147354 -56597544 + (TA)n Simple_repeat Simple_repeat 2 128 0 965 270 114 15 chr13 63147356 63147900 -56596998 - L1ME1 LINE L1 -919 6022 5425 676 288 55 35 chr13 63147937 63148336 -56596562 - L1ME1 LINE L1 -5945 478 72 21 89 0 0 chr13 63148378 63148434 -56596464 + AT_rich Low_complexity Low_complexity 1 56 0 246 228 9 26 chr13 63148688 63148802 -56596096 + CT-rich Low_complexity Low_complexity 2 113 0 24 32 0 0 chr13 63148927 63148958 -56595940 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 63149427 63149451 -56595447 + AT_rich Low_complexity Low_complexity 1 24 0 183 314 20 0 chr13 63149886 63149937 -56594961 - MIR SINE MIR -101 107 56 2090 93 25 0 chr13 63151026 63151304 -56593594 + AluSg1 SINE Alu 10 294 -15 186 255 85 0 chr13 63153011 63153058 -56591840 - MIR SINE MIR -2 260 210 29 60 0 0 chr13 63153421 63153471 -56591427 + AT_rich Low_complexity Low_complexity 1 50 0 638 316 64 19 chr13 63154744 63155010 -56589888 - L2 LINE L2 -522 2792 2515 706 288 151 16 chr13 63155191 63155622 -56589276 + L1ME1 LINE L1 5401 5889 -275 473 284 68 0 chr13 63155649 63155797 -56589101 + L1ME1 LINE L1 6000 6157 -9 2270 125 13 21 chr13 63156485 63156861 -56588037 - THE1C LTR MaLR -2 373 1 1160 114 31 0 chr13 63161037 63161230 -56583668 - L1MA2 LINE L1 -1 6303 6105 192 321 0 0 chr13 63161230 63161283 -56583615 - MIR SINE MIR -143 119 67 250 256 24 24 chr13 63161292 63161374 -56583524 + MIR SINE MIR 82 163 -99 217 203 16 16 chr13 63163076 63163140 -56581758 + (TA)n Simple_repeat Simple_repeat 1 64 0 30 0 0 0 chr13 63163915 63163945 -56580953 + AT_rich Low_complexity Low_complexity 1 30 0 620 165 25 13 chr13 63164312 63164470 -56580428 + GA-rich Low_complexity Low_complexity 1 160 0 1906 179 51 0 chr13 63164530 63164921 -56579977 - L1 LINE L1 -1054 5092 4682 * 3729 209 25 5 chr13 63164913 63165770 -56579128 + L1 LINE L1 3824 4697 -1449 1667 221 20 87 chr13 63165914 63166490 -56578408 - MER44D DNA MER2_type -11 594 1 354 162 0 0 chr13 63167089 63167163 -56577735 + CT-rich Low_complexity Low_complexity 3 76 0 350 232 0 0 chr13 63167271 63167353 -56577545 + L1MA2 LINE L1 6223 6304 0 278 272 9 88 chr13 63168373 63168487 -56576411 - L2 LINE L2 -6 3307 3203 5845 108 12 6 chr13 63168649 63169705 -56575193 + L1PB1 LINE L1 5084 6144 -7 407 322 16 44 chr13 63169840 63170023 -56574875 + MLT1H LTR MaLR 130 307 -242 201 121 0 0 chr13 63170367 63170400 -56574498 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2907 183 43 43 chr13 63170694 63171365 -56573533 + LTR51 LTR ERV1 1 671 0 866 238 19 14 chr13 63172861 63173071 -56571827 + MER58A DNA MER1_type 12 222 -2 25 0 0 0 chr13 63173874 63173899 -56570999 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr13 63173992 63174013 -56570885 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 63174059 63174081 -56570817 + AT_rich Low_complexity Low_complexity 1 22 0 1629 178 52 25 chr13 63174345 63174710 -56570188 - THE1C LTR MaLR 0 375 1 1353 328 91 41 chr13 63174723 63175829 -56569069 + ERVL LTR ERVL 2943 4063 -1591 1238 341 37 45 chr13 63175947 63176444 -56568454 + ERVL LTR ERVL 4267 4757 -1007 2243 103 7 0 chr13 63176444 63176734 -56568164 - AluSp SINE Alu -21 292 1 1238 341 37 45 chr13 63176734 63176996 -56567902 + ERVL LTR ERVL 4757 5020 -744 367 263 40 0 chr13 63177824 63177923 -56566975 + MER58C DNA MER1_type 109 211 -4 277 316 130 17 chr13 63178053 63178230 -56566668 + LTR50 LTR ERVL 36 232 -563 261 0 0 0 chr13 63178231 63178260 -56566638 + (T)n Simple_repeat Simple_repeat 1 29 0 236 246 31 0 chr13 63178457 63178522 -56566376 - L1P LINE L1 -1929 4217 4151 * 1040 219 14 0 chr13 63178515 63178776 -56566122 - L1M4 LINE L1 -1949 4197 3933 * 4897 178 17 21 chr13 63178771 63180320 -56564578 + L1PB4 LINE L1 4608 6148 -8 21 0 0 0 chr13 63180343 63180364 -56564534 + AT_rich Low_complexity Low_complexity 1 21 0 33 85 0 0 chr13 63180397 63180479 -56564419 + AT_rich Low_complexity Low_complexity 1 82 0 27 0 0 0 chr13 63181596 63181623 -56563275 + AT_rich Low_complexity Low_complexity 1 27 0 343 305 96 46 chr13 63181876 63182115 -56562783 - HAL1 LINE L1 -855 1652 1402 490 246 41 96 chr13 63182195 63182415 -56562483 + MIR SINE MIR 6 213 -49 344 322 17 11 chr13 63182573 63182750 -56562148 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 36 0 0 chr13 63182786 63182814 -56562084 + AT_rich Low_complexity Low_complexity 1 28 0 5499 216 66 23 chr13 63182907 63184278 -56560620 - L1MD2 LINE L1 -3 7769 6240 346 171 13 13 chr13 63184290 63184366 -56560532 + L1MC3 LINE L1 5842 5917 -1868 * 1694 186 9 9 chr13 63184362 63184695 -56560203 - L1MD2 LINE L1 -2021 5764 5432 422 266 18 0 chr13 63184695 63184808 -56560090 - L1MCa LINE L1 -6296 130 16 205 104 0 42 chr13 63185340 63185388 -56559510 + (CAATA)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr13 63186317 63186340 -56558558 + AT_rich Low_complexity Low_complexity 1 23 0 2380 90 0 0 chr13 63186930 63187241 -56557657 + AluY SINE Alu 1 311 0 628 275 65 36 chr13 63187372 63187756 -56557142 - L1ME3A LINE L1 -113 6057 5662 2970 200 53 113 chr13 63187779 63188738 -56556160 - MER21A LTR ERV1 -29 902 1 1337 290 60 28 chr13 63188836 63189556 -56555342 + L1ME3A LINE L1 5301 6043 -127 237 235 29 0 chr13 63189558 63189626 -56555272 - MER116 DNA Mariner -8 72 3 6335 167 172 57 chr13 63190140 63191714 -56553184 - MER52A LTR ERV1 0 1755 1 219 146 0 0 chr13 63192636 63192677 -56552221 + (CA)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr13 63192748 63192774 -56552124 + AT_rich Low_complexity Low_complexity 1 26 0 304 124 57 40 chr13 63193404 63193581 -56551317 + (TA)n Simple_repeat Simple_repeat 1 180 0 459 0 0 0 chr13 63193610 63193661 -56551237 + (TA)n Simple_repeat Simple_repeat 2 52 0 1851 188 5 11 chr13 63193662 63194029 -56550869 + MLT1A1 LTR MaLR 1 365 0 33 56 0 0 chr13 63194148 63194202 -56550696 + AT_rich Low_complexity Low_complexity 1 54 0 226 213 13 67 chr13 63195004 63195079 -56549819 + MIR SINE MIR 64 134 -128 421 246 102 0 chr13 63196456 63196574 -56548324 - MLT1H LTR MaLR -1 548 419 271 269 43 61 chr13 63196668 63196888 -56548010 - L1MC5 LINE L1 -391 7417 7249 234 0 0 0 chr13 63197256 63197282 -56547616 + (A)n Simple_repeat Simple_repeat 1 26 0 773 277 18 5 chr13 63197300 63197520 -56547378 - MER58A DNA MER1_type -1 223 1 6519 152 29 12 chr13 63198534 63199744 -56545154 + Tigger3b DNA MER2_type 1 1231 0 220 365 131 0 chr13 63200314 63200459 -56544439 + MIR SINE MIR 43 206 -56 395 345 156 12 chr13 63200582 63200993 -56543905 - L1M4 LINE L1 -2704 3442 2973 291 193 0 63 chr13 63204473 63204593 -56540305 + MER20 DNA MER1_type 22 219 0 349 148 235 12 chr13 63204840 63204921 -56539977 - MER5B DNA MER1_type -53 125 27 336 156 16 16 chr13 63205049 63205113 -56539785 + MLT1L LTR MaLR 550 613 -2 198 0 0 0 chr13 63205236 63205258 -56539640 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2613 131 17 62 chr13 63205278 63205917 -56538981 + MER4D LTR ERV1 1 872 0 1746 178 138 10 chr13 63205979 63206362 -56538536 + MSTB1 LTR MaLR 1 432 0 36 77 0 0 chr13 63206953 63207031 -56537867 + AT_rich Low_complexity Low_complexity 1 78 0 272 352 64 53 chr13 63207105 63207634 -56537264 - L2 LINE L2 -927 2387 1853 21 43 0 0 chr13 63208314 63208337 -56536561 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr13 63209016 63209045 -56535853 + (T)n Simple_repeat Simple_repeat 1 29 0 2002 106 11 0 chr13 63209089 63209373 -56535525 - AluSc SINE Alu -6 303 17 705 281 142 9 chr13 63209446 63209770 -56535128 + LTR50 LTR ERVL 387 753 -42 494 194 0 0 chr13 63211443 63211541 -56533357 + L1MC3 LINE L1 6430 6527 -1258 * 976 177 76 101 chr13 63211539 63211906 -56532992 + L1MC3 LINE L1 6738 7095 -690 234 284 53 11 chr13 63211908 63212003 -56532895 + MLT1F1 LTR MaLR 35 133 -434 2297 227 34 7 chr13 63212009 63212577 -56532321 + L1MC3 LINE L1 7202 7784 -1 532 67 22 0 chr13 63212668 63212758 -56532140 + L1PA13 LINE L1 6067 6158 -5 197 358 33 8 chr13 63212852 63212972 -56531926 + MIR SINE MIR 94 216 -46 391 333 149 44 chr13 63213393 63214142 -56530756 + L2 LINE L2 2285 3117 -196 1655 191 25 11 chr13 63214397 63214763 -56530135 - L1MB1 LINE L1 -1 6167 5797 1155 179 69 0 chr13 63214764 63214982 -56529916 + AluJo SINE Alu 1 233 -79 906 146 0 0 chr13 63214986 63215123 -56529775 - AluSq/x SINE Alu -176 137 1 876 275 220 28 chr13 63215123 63215632 -56529266 - L1ME1 LINE L1 -274 5892 5289 22 35 0 0 chr13 63215702 63215731 -56529167 + AT_rich Low_complexity Low_complexity 1 29 0 911 264 29 12 chr13 63215787 63216131 -56528767 - L1ME1 LINE L1 -1085 5061 4712 802 244 25 30 chr13 63216640 63216794 -56528104 + MER58A DNA MER1_type 10 164 -2256 1731 129 170 16 chr13 63216794 63217165 -56527733 + MSTA LTR MaLR 1 428 0 802 244 25 30 chr13 63217165 63217211 -56527687 + MER58A DNA MER1_type 164 209 -15 23 78 0 0 chr13 63218278 63218329 -56526569 + AT_rich Low_complexity Low_complexity 1 51 0 2156 126 0 0 chr13 63218336 63218637 -56526261 + AluSc SINE Alu 1 301 -8 386 184 37 18 chr13 63219090 63219199 -56525699 + LTR41 LTR ERVL 657 767 -6 388 369 44 26 chr13 63219521 63219860 -56525038 + ERVL LTR ERVL 353 697 -5067 275 348 9 0 chr13 63219904 63220016 -56524882 + ERVL LTR ERVL 813 925 -4839 2456 104 8 8 chr13 63220084 63220439 -56524459 - THE1A LTR MaLR 0 355 1 4976 119 3 4 chr13 63220439 63221164 -56523734 - THE1A-int LTR MaLR 0 1580 857 418 343 61 12 chr13 63221732 63221977 -56522921 - L2 LINE L2 -74 3239 2983 284 216 0 0 chr13 63222351 63222402 -56522496 - MLT1A1 LTR MaLR 0 374 324 240 57 29 0 chr13 63222416 63222451 -56522447 + L1P LINE L1 4271 4306 -1840 3559 218 52 19 chr13 63222480 63224010 -56520888 + L1MA4 LINE L1 4429 6016 -115 1993 196 83 18 chr13 63223639 63224145 -56520753 + L1PB4 LINE L1 5618 6156 0 * 1892 155 30 0 chr13 63224153 63224457 -56520441 - MLT1A1 LTR MaLR -52 313 1 213 300 14 0 chr13 63224477 63224547 -56520351 - MIR SINE MIR -121 141 71 2309 71 13 13 chr13 63224568 63224879 -56520019 + AluY SINE Alu 1 311 0 22 35 0 0 chr13 63225044 63225073 -56519825 + AT_rich Low_complexity Low_complexity 1 29 0 5865 136 6 0 chr13 63225560 63226445 -56518453 - THE1A-int LTR MaLR -690 890 1 2419 84 38 3 chr13 63226445 63226788 -56518110 - THE1A LTR MaLR 0 355 1 429 285 58 76 chr13 63226807 63227200 -56517698 + ERVL LTR ERVL 1014 1399 -4365 332 338 73 46 chr13 63227356 63227833 -56517065 - L1MEd LINE L1 -5267 852 363 3575 183 50 8 chr13 63228298 63229042 -56515856 + L1 LINE L1 3393 4167 -1979 * 4100 171 44 10 chr13 63229015 63229786 -56515112 + L1PA16 LINE L1 5364 6160 -6 2200 140 25 8 chr13 63229828 63230193 -56514705 - THE1C LTR MaLR 0 375 5 9404 136 33 36 chr13 63230196 63231761 -56513137 - THE1C-int LTR MaLR -20 1560 1 2574 117 3 8 chr13 63231761 63232138 -56512760 - THE1C LTR MaLR 0 375 1 1377 181 24 7 chr13 63232138 63232436 -56512462 + L1 LINE L1 4198 4500 -1646 31 0 0 0 chr13 63232840 63232871 -56512027 + AT_rich Low_complexity Low_complexity 1 31 0 208 167 0 21 chr13 63233183 63233231 -56511667 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1266 318 35 20 chr13 63233231 63233782 -56511116 + L1MEc LINE L1 108 666 -5730 1437 136 29 0 chr13 63233852 63234095 -56510803 - L1PA15 LINE L1 -3 6162 5913 2683 164 7 31 chr13 63234103 63234229 -56510669 - L1PA15 LINE L1 -522 5643 5515 1843 137 0 0 chr13 63234229 63234491 -56510407 + AluSq SINE Alu 38 299 -14 2683 164 7 31 chr13 63234491 63235250 -56509648 - L1PA15 LINE L1 -650 5515 4782 * 4119 263 32 43 chr13 63235233 63236521 -56508377 - L1PA13 LINE L1 -5362 1425 4 598 272 76 12 chr13 63236525 63236775 -56508123 + L1MEc LINE L1 669 934 -5462 1376 284 123 27 chr13 63236822 63238045 -56506853 + L1MEc LINE L1 1033 2373 -4023 587 352 54 35 chr13 63238208 63238523 -56506375 + L2 LINE L2 2548 2868 -446 356 323 192 14 chr13 63238595 63238892 -56506006 + L2 LINE L2 2960 3309 -4 1485 152 40 71 chr13 63239840 63240233 -56504665 - MER67C LTR ERV1 -247 267 1 25 31 0 0 chr13 63240710 63240742 -56504156 + AT_rich Low_complexity Low_complexity 1 32 0 411 153 0 0 chr13 63240872 63240944 -56503954 - L1MA5 LINE L1 -3 6297 6226 469 266 63 13 chr13 63241376 63241534 -56503364 - MIR SINE MIR -57 205 40 27 0 0 0 chr13 63241603 63241630 -56503268 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr13 63241702 63241738 -56503160 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 63242001 63242023 -56502875 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr13 63242028 63242071 -56502827 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 483 147 55 0 chr13 63242075 63242184 -56502714 + L1MA9 LINE L1 6197 6311 -1 2228 69 41 0 chr13 63242366 63242657 -56502241 + AluY SINE Alu 1 303 -8 121 27 0 0 chr13 63242680 63242829 -56502069 + AT_rich Low_complexity Low_complexity 1 149 0 403 324 79 35 chr13 63243751 63244041 -56500857 - L2 LINE L2 -133 3180 2878 4255 246 69 33 chr13 63244182 63244509 -56500389 - Cheshire DNA MER1_type -3 2417 2103 1967 157 0 0 chr13 63244509 63244808 -56500090 - AluSx SINE Alu -13 299 1 4255 246 69 33 chr13 63244808 63245928 -56498970 - Cheshire DNA MER1_type -317 2103 918 2256 109 0 0 chr13 63246129 63246431 -56498467 + AluSg1 SINE Alu 4 305 -4 2075 93 7 10 chr13 63246579 63246880 -56498018 - AluSc SINE Alu -9 300 1 2091 108 7 3 chr13 63247891 63248187 -56496711 - AluSc SINE Alu -12 297 1 728 232 11 28 chr13 63248187 63248357 -56496541 + MSTD LTR MaLR 220 388 -8 1814 138 54 38 chr13 63249279 63249648 -56495250 + THE1C LTR MaLR 1 375 0 446 222 0 0 chr13 63250079 63250169 -56494729 - FLAM_A SINE Alu -10 132 43 29 0 0 0 chr13 63250262 63250291 -56494607 + AT_rich Low_complexity Low_complexity 1 29 0 1783 101 26 4 chr13 63250453 63250720 -56494178 + MER51A LTR ERV1 361 633 -1 468 0 0 0 chr13 63250958 63251010 -56493888 + (TA)n Simple_repeat Simple_repeat 2 53 0 47 33 0 0 chr13 63251745 63251806 -56493092 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr13 63252399 63252421 -56492477 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 63252522 63252548 -56492350 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 63252792 63252814 -56492084 + AT_rich Low_complexity Low_complexity 1 22 0 446 245 37 16 chr13 63254052 63254240 -56490658 + Charlie5 DNA MER1_type 2432 2623 0 502 255 46 0 chr13 63254240 63254393 -56490505 + L1M LINE L1 5258 5417 -749 589 316 78 21 chr13 63254821 63255153 -56489745 + LTR16B LTR ERVL 114 464 0 235 283 58 36 chr13 63255390 63255528 -56489370 - MLT1L LTR MaLR -312 303 163 23 54 0 0 chr13 63255823 63255860 -56489038 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr13 63255900 63255931 -56488967 + AT_rich Low_complexity Low_complexity 1 31 0 1882 137 4 0 chr13 63256322 63256600 -56488298 + AluSp SINE Alu 1 279 -34 27 0 0 0 chr13 63257876 63257903 -56486995 + AT_rich Low_complexity Low_complexity 1 27 0 1900 183 49 8 chr13 63259161 63259527 -56485371 + MLT1B LTR MaLR 10 390 0 22 0 0 0 chr13 63259649 63259671 -56485227 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr13 63259920 63259954 -56484944 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 63259969 63260000 -56484898 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 63260109 63260132 -56484766 + AT_rich Low_complexity Low_complexity 1 23 0 467 171 125 16 chr13 63260185 63260317 -56484581 - L1P LINE L1 -816 5330 5180 234 150 0 0 chr13 63260513 63260553 -56484345 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1385 205 18 18 chr13 63261557 63261884 -56483014 - L1 LINE L1 -1941 4599 4273 592 214 0 0 chr13 63261884 63262000 -56482898 + L1PA16 LINE L1 6048 6164 -2 458 339 119 21 chr13 63262473 63263055 -56481843 + L1ME LINE L1 574 1252 -5009 205 182 0 0 chr13 63263163 63263207 -56481691 + A-rich Low_complexity Low_complexity 1 44 0 291 258 104 45 chr13 63263214 63263681 -56481217 - L1MDa LINE L1 -3761 2814 2285 1746 167 0 75 chr13 63263862 63264217 -56480681 - AluJo SINE Alu 0 332 3 27 49 0 0 chr13 63264897 63264938 -56479960 + AT_rich Low_complexity Low_complexity 1 41 0 2337 208 42 18 chr13 63265368 63265472 -56479426 - L1MC3 LINE L1 -1 7784 7684 8341 118 15 24 chr13 63265472 63266768 -56478130 + HSMAR1 DNA Mariner 2 1286 -1 2337 208 42 18 chr13 63266768 63267234 -56477664 - L1MC3 LINE L1 -101 7684 7200 412 248 16 0 chr13 63267241 63267370 -56477528 - L1MA7 LINE L1 -11 6280 6150 * 423 239 0 11 chr13 63267369 63267457 -56477441 - L1MC3 LINE L1 -576 7209 7123 265 200 0 0 chr13 63267447 63267497 -56477401 - L1MA4 LINE L1 -617 5566 5517 * 4095 152 11 26 chr13 63267493 63268232 -56476666 + L1MA4 LINE L1 5552 6279 -21 1178 206 61 4 chr13 63268253 63268530 -56476368 - L1MC3 LINE L1 -648 7137 6845 187 324 42 0 chr13 63268615 63268686 -56476212 - MIR SINE MIR -167 95 22 237 313 12 0 chr13 63270421 63270501 -56474397 - HAL1 LINE L1 -2273 234 154 22 35 0 0 chr13 63270523 63270552 -56474346 + AT_rich Low_complexity Low_complexity 1 29 0 1705 209 67 61 chr13 63270605 63271116 -56473782 - MER67D LTR ERV1 0 514 1 30 0 0 0 chr13 63272027 63272057 -56472841 + AT_rich Low_complexity Low_complexity 1 30 0 195 167 0 0 chr13 63272509 63272551 -56472347 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 418 343 61 12 chr13 63273190 63273435 -56471463 - L2 LINE L2 -74 3239 2983 284 216 0 0 chr13 63273809 63273860 -56471038 - MLT1A1 LTR MaLR 0 374 324 240 57 29 0 chr13 63273874 63273909 -56470989 + L1P LINE L1 4271 4306 -1840 3553 218 52 19 chr13 63273938 63275469 -56469429 + L1MA4 LINE L1 4429 6016 -115 1993 196 83 18 chr13 63275098 63275604 -56469294 + L1PB4 LINE L1 5618 6156 0 * 1892 155 30 0 chr13 63275612 63275916 -56468982 - MLT1A1 LTR MaLR -52 313 1 213 300 14 0 chr13 63275936 63276006 -56468892 - MIR SINE MIR -121 141 71 2309 71 13 13 chr13 63276027 63276338 -56468560 + AluY SINE Alu 1 311 0 22 35 0 0 chr13 63276503 63276532 -56468366 + AT_rich Low_complexity Low_complexity 1 29 0 2167 111 30 43 chr13 63278930 63279299 -56465599 - THE1B LTR MaLR 0 364 1 930 170 0 18 chr13 63279536 63279701 -56465197 + FRAM SINE Alu 1 161 -15 2103 115 0 16 chr13 63279885 63280198 -56464700 + AluSx SINE Alu 5 312 0 28 29 0 0 chr13 63280809 63280844 -56464054 + AT_rich Low_complexity Low_complexity 1 35 0 268 270 50 10 chr13 63280999 63281099 -56463799 - L1ME4a LINE L1 -26 6095 5992 2328 181 5 32 chr13 63283351 63283794 -56461104 - MER52A LTR ERV1 -422 1333 903 1226 185 0 0 chr13 63283790 63284022 -56460876 - MER52A LTR ERV1 -1143 612 381 * 683 247 98 0 chr13 63284034 63284228 -56460670 - MER52A LTR ERV1 -1542 213 1 25 0 0 0 chr13 63284233 63284258 -56460640 + AT_rich Low_complexity Low_complexity 1 25 0 690 235 56 0 chr13 63284518 63284697 -56460201 + MER5A DNA MER1_type 1 189 0 245 217 33 43 chr13 63285249 63285341 -56459557 + CT-rich Low_complexity Low_complexity 1 91 0 271 246 15 0 chr13 63285432 63285497 -56459401 - L1ME3A LINE L1 -112 6058 5993 217 171 40 40 chr13 63285826 63285902 -56458996 + (TTTAA)n Simple_repeat Simple_repeat 4 79 0 2634 159 42 35 chr13 63286389 63286966 -56457932 + L1 LINE L1 4048 4628 -1518 592 253 65 41 chr13 63286978 63287271 -56457627 - L1M4 LINE L1 -2771 3375 3076 337 333 99 29 chr13 63287754 63288169 -56456729 - L1M4 LINE L1 -3392 2754 2311 33 43 0 0 chr13 63288209 63288256 -56456642 + AT_rich Low_complexity Low_complexity 1 47 0 265 303 63 44 chr13 63289769 63290132 -56454766 + L1MEc LINE L1 1953 2322 -4074 2056 106 7 3 chr13 63290138 63290439 -56454459 + AluY SINE Alu 3 304 -7 1013 154 0 0 chr13 63290439 63290613 -56454285 + AluSg/x SINE Alu 132 305 0 1508 209 136 3 chr13 63290646 63291028 -56453870 - Tigger2a DNA MER2_type -1 433 1 914 189 0 0 chr13 63291158 63291348 -56453550 + L1MA4 LINE L1 6099 6288 -12 1753 251 48 12 chr13 63291364 63292044 -56452854 + L1MEc LINE L1 2400 3104 -3111 4500 253 27 16 chr13 63292055 63294166 -56450732 + L1PA13 LINE L1 2 2634 -4163 927 280 21 9 chr13 63294172 63294508 -56450390 + L1PA13 LINE L1 3424 3763 -3034 * 5131 227 13 3 chr13 63294486 63295642 -56449256 + L1PA13 LINE L1 4413 5580 -1217 282 368 90 0 chr13 63295825 63296037 -56448861 + HAL1 LINE L1 125 355 -2152 446 244 145 72 chr13 63296276 63296662 -56448236 + HAL1 LINE L1 714 1127 -1380 285 188 25 12 chr13 63296724 63296804 -56448094 + (TA)n Simple_repeat Simple_repeat 1 81 0 452 282 44 117 chr13 63296813 63297111 -56447787 - MER93b LTR ERV1 0 373 127 31 42 0 42 chr13 63297111 63297182 -56447716 + AT_rich Low_complexity Low_complexity 1 68 0 228 233 33 33 chr13 63297360 63297450 -56447448 + L1MC4 LINE L1 6614 6703 -1339 273 183 44 61 chr13 63297457 63297637 -56447261 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 998 287 60 16 chr13 63297692 63298127 -56446771 + HAL1 LINE L1 1325 1778 -729 390 236 90 21 chr13 63298157 63298301 -56446597 + LTR16A LTR ERVL 20 173 -277 1380 228 19 0 chr13 63298501 63298813 -56446085 - L1MA4 LINE L1 -80 6220 5903 31 58 0 0 chr13 63298813 63298865 -56446033 + AT_rich Low_complexity Low_complexity 1 52 0 282 73 0 0 chr13 63299736 63299777 -56445121 + (TG)n Simple_repeat Simple_repeat 1 41 0 420 20 0 0 chr13 63300167 63300216 -56444682 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 32 26 0 0 chr13 63300955 63300994 -56443904 + AT_rich Low_complexity Low_complexity 1 39 0 1283 181 19 0 chr13 63301417 63301683 -56443215 + L1MA6 LINE L1 6030 6300 0 23 33 0 0 chr13 63302332 63302362 -56442536 + AT_rich Low_complexity Low_complexity 1 30 0 1608 267 33 41 chr13 63302876 63303516 -56441382 - L1ME1 LINE L1 -116 6050 5416 * 4088 181 24 46 chr13 63303513 63304396 -56440502 + L1MA3 LINE L1 5443 6305 0 30 59 0 0 chr13 63304425 63304476 -56440422 + AT_rich Low_complexity Low_complexity 1 51 0 31 26 0 0 chr13 63304765 63304803 -56440095 + AT_rich Low_complexity Low_complexity 1 38 0 1386 136 4 0 chr13 63305196 63305424 -56439474 + L1MA3 LINE L1 6077 6305 0 1850 134 13 20 chr13 63305518 63305816 -56439082 + AluSc SINE Alu 4 299 -10 22 35 0 0 chr13 63306548 63306577 -56438321 + AT_rich Low_complexity Low_complexity 1 29 0 227 200 17 17 chr13 63306737 63306797 -56438101 + L1MEc LINE L1 96 155 -6241 231 229 160 15 chr13 63306893 63307024 -56437874 + LTR50 LTR ERVL 504 653 -142 230 313 16 0 chr13 63308028 63308092 -56436806 + MIR SINE MIR 111 175 -87 1123 103 88 57 chr13 63308506 63308700 -56436198 - THE1B LTR MaLR -164 200 1 11521 97 2 11 chr13 63308705 63310291 -56434607 - THE1B-int LTR MaLR -6 1574 2 1941 125 68 34 chr13 63310292 63310644 -56434254 - THE1B LTR MaLR 0 364 1 1845 111 3 54 chr13 63310941 63311261 -56433637 - AluSp SINE Alu 0 305 1 29 60 0 0 chr13 63312590 63312640 -56432258 + AT_rich Low_complexity Low_complexity 1 50 0 1841 167 0 0 chr13 63313096 63313378 -56431520 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr13 63313379 63313400 -56431498 + AT_rich Low_complexity Low_complexity 1 21 0 2768 3 0 7 chr13 63313900 63314208 -56430690 - AluYa5 SINE Alu -5 306 1 198 275 101 0 chr13 63314227 63314296 -56430602 + L3b LINE CR1 1261 1336 -247 21 0 0 0 chr13 63315706 63315727 -56429171 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr13 63316253 63316283 -56428615 + AT_rich Low_complexity Low_complexity 1 30 0 190 56 56 0 chr13 63316536 63316572 -56428326 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 23 0 0 0 chr13 63316591 63316614 -56428284 + AT_rich Low_complexity Low_complexity 1 23 0 225 279 0 25 chr13 63316754 63316787 -56428111 + (CATATA)n Simple_repeat Simple_repeat 2 34 -44 1893 189 30 0 chr13 63316787 63317125 -56427773 - MER7A DNA MER2_type 0 346 1 225 279 0 25 chr13 63317125 63317170 -56427728 + (CATATA)n Simple_repeat Simple_repeat 34 78 0 275 241 36 0 chr13 63317653 63317736 -56427162 + CT-rich Low_complexity Low_complexity 5 90 0 324 344 44 16 chr13 63317809 63317992 -56426906 - MIR SINE MIR -56 206 19 257 247 39 0 chr13 63318855 63318932 -56425966 - L1MEc LINE L1 -6202 194 115 227 191 16 0 chr13 63320495 63320558 -56424340 + CT-rich Low_complexity Low_complexity 3 66 0 21 0 0 0 chr13 63320703 63320724 -56424174 + AT_rich Low_complexity Low_complexity 1 21 0 1452 165 59 11 chr13 63321127 63321419 -56423479 + AluSx SINE Alu 14 312 0 39 38 0 0 chr13 63321708 63321761 -56423137 + AT_rich Low_complexity Low_complexity 1 53 0 1357 244 83 31 chr13 63322556 63323036 -56421862 + MLT1D LTR MaLR 1 505 0 382 292 112 42 chr13 63323144 63324028 -56420870 - L1ME LINE L1 -337 5767 4816 21 0 0 0 chr13 63324061 63324082 -56420816 + AT_rich Low_complexity Low_complexity 1 21 0 525 269 180 20 chr13 63324098 63324547 -56420351 - L1ME LINE L1 -4822 1260 740 391 301 94 87 chr13 63324598 63324962 -56419936 - L1ME LINE L1 -5296 774 414 2293 198 19 37 chr13 63324962 63325443 -56419455 - MER70A LTR ERVL 0 472 1 391 301 94 87 chr13 63325443 63325497 -56419401 - L1ME LINE L1 -5656 414 362 1814 168 49 0 chr13 63325497 63325825 -56419073 - MER2 DNA MER2_type 0 344 1 391 301 94 87 chr13 63325825 63325956 -56418942 - L1ME LINE L1 -5708 362 253 701 356 25 48 chr13 63326536 63327257 -56417641 - L2 LINE L2 0 3313 2548 1995 157 5 41 chr13 63327367 63327755 -56417143 + THE1C LTR MaLR 2 375 0 9434 135 25 30 chr13 63327755 63329344 -56415554 + THE1C-int LTR MaLR 1 1580 0 1870 134 57 33 chr13 63329344 63329710 -56415188 + THE1C LTR MaLR 1 375 0 826 189 0 0 chr13 63330022 63330170 -56414728 + AluSg/x SINE Alu 139 286 -24 432 289 51 19 chr13 63330627 63330783 -56414115 + MIR SINE MIR 35 195 -67 333 0 0 0 chr13 63331430 63331467 -56413431 + (TG)n Simple_repeat Simple_repeat 2 38 0 396 111 0 0 chr13 63331469 63331532 -56413366 + (GA)n Simple_repeat Simple_repeat 1 63 0 1902 265 92 34 chr13 63332177 63333216 -56411682 + L1ME3 LINE L1 1308 2407 -4133 366 240 29 0 chr13 63333242 63333346 -56411552 + L1ME3 LINE L1 5384 5490 -1050 26 30 0 0 chr13 63333423 63333456 -56411442 + AT_rich Low_complexity Low_complexity 1 33 0 230 371 37 45 chr13 63333737 63333982 -56410916 + L2 LINE L2 2722 2964 -350 193 246 159 0 chr13 63334188 63334257 -56410641 + L2 LINE L2 3183 3262 -10 275 255 0 21 chr13 63334977 63335071 -56409827 + (TA)n Simple_repeat Simple_repeat 2 93 0 853 315 38 30 chr13 63335315 63335845 -56409053 + L1ME3 LINE L1 5648 6181 -375 1047 269 22 12 chr13 63335850 63336173 -56408725 + L1ME3 LINE L1 6231 6556 0 23 33 0 0 chr13 63336386 63336416 -56408482 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr13 63336795 63336842 -56408056 + AT_rich Low_complexity Low_complexity 1 47 0 1462 139 0 31 chr13 63336980 63337012 -56407886 - L1MA3 LINE L1 0 6305 6274 2508 105 6 0 chr13 63337012 63337365 -56407533 - THE1A LTR MaLR 0 355 1 11114 113 2 1 chr13 63337365 63338943 -56405955 - THE1A-int LTR MaLR 0 1580 1 2568 105 6 0 chr13 63338943 63339296 -56405602 - THE1A LTR MaLR 0 355 1 1462 139 0 31 chr13 63339296 63339519 -56405379 - L1MA3 LINE L1 -28 6277 6056 453 310 123 48 chr13 63339743 63340265 -56404633 + L2 LINE L2 2754 3302 -11 51 51 0 0 chr13 63340362 63340441 -56404457 + AT_rich Low_complexity Low_complexity 1 79 0 291 53 71 53 chr13 63340446 63340559 -56404339 + (TATAA)n Simple_repeat Simple_repeat 2 116 0 40 49 0 0 chr13 63340559 63340620 -56404278 + AT_rich Low_complexity Low_complexity 1 61 0 201 135 67 0 chr13 63340627 63340716 -56404182 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 2322 74 0 3 chr13 63341919 63342216 -56402682 - AluY SINE Alu -12 299 4 548 358 70 19 chr13 63343895 63344323 -56400575 + HERVL LTR ERVL 3073 3522 -2132 769 297 140 38 chr13 63344552 63344973 -56399925 - LTR16B LTR ERVL 0 464 1 1086 245 73 4 chr13 63345636 63345909 -56398989 - LTR16C LTR ERVL -2 489 198 1219 220 55 8 chr13 63346152 63346490 -56398408 + L1MB4 LINE L1 5811 6164 -16 1598 111 0 29 chr13 63346510 63346718 -56398180 + AluSg/x SINE Alu 74 276 -34 209 56 0 28 chr13 63346718 63346754 -56398144 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1598 111 0 29 chr13 63346754 63346788 -56398110 + AluSg/x SINE Alu 276 309 -1 21 95 0 0 chr13 63346934 63346997 -56397901 + AT_rich Low_complexity Low_complexity 1 63 0 284 296 12 2 chr13 63347121 63347293 -56397605 + L1ME LINE L1 5628 5800 -321 989 118 0 14 chr13 63348136 63348386 -56396512 - FLAM_C SINE Alu 0 249 2 309 329 31 25 chr13 63349360 63349521 -56395377 - HERVL LTR ERVL -1269 4385 4224 465 313 43 70 chr13 63349674 63350115 -56394783 - HERVL LTR ERVL -1631 4023 3595 1532 246 58 65 chr13 63350393 63351052 -56393846 + MLT1E1 LTR MaLR 1 654 0 416 302 105 50 chr13 63352958 63353559 -56391339 + L1MDa LINE L1 1468 2142 -4440 679 75 19 0 chr13 63353559 63353666 -56391232 + (TAGA)n Simple_repeat Simple_repeat 2 110 0 1034 168 50 138 chr13 63353716 63354014 -56390884 + L1MA4A LINE L1 1240 1511 -5054 719 250 46 31 chr13 63354025 63354349 -56390549 + L1MA4A LINE L1 3007 3335 -4230 12134 225 44 26 chr13 63354361 63356455 -56388443 - L1PB3 LINE L1 -6 6864 4811 2098 96 0 0 chr13 63356455 63356779 -56388119 - AluY SINE Alu 0 324 1 12134 225 44 26 chr13 63356779 63362324 -56382574 - L1PB3 LINE L1 -2059 4811 8 12310 222 23 14 chr13 63362326 63365699 -56379199 + L1MA4A LINE L1 3317 6720 -845 365 185 0 49 chr13 63365696 63365777 -56379121 + L1MA4A LINE L1 7298 7374 -348 * 1017 164 5 43 chr13 63365787 63365995 -56378903 + L1PB1 LINE L1 1 200 -6663 * 2344 124 151 41 chr13 63365969 63366459 -56378439 + L1PB1 LINE L1 599 1142 -5721 9409 165 41 3 chr13 63366479 63368471 -56376427 + L1PB1 LINE L1 1311 3437 -3425 1973 128 13 26 chr13 63368471 63368777 -56376121 - AluSx SINE Alu -10 302 1 9409 165 41 3 chr13 63368777 63369533 -56375365 + L1PB1 LINE L1 3437 4163 -2699 3053 205 18 3 chr13 63369538 63370211 -56374687 + L1PB1 LINE L1 4379 5061 -1801 5156 186 36 5 chr13 63370217 63370287 -56374611 + L1PB1 LINE L1 5341 5407 -1460 207 0 0 0 chr13 63370287 63370310 -56374588 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 5156 186 36 5 chr13 63370310 63371070 -56373828 + L1PB1 LINE L1 5407 6238 -629 1847 134 0 4 chr13 63371070 63371345 -56373553 + AluSg SINE Alu 37 310 0 5156 186 36 5 chr13 63371345 63371995 -56372903 + L1PB1 LINE L1 6238 6866 -1 991 226 15 34 chr13 63371952 63372217 -56372681 + L1MA4A LINE L1 6617 6876 -143 * 1570 220 31 8 chr13 63372228 63372619 -56372279 + L1MA4 LINE L1 5896 6295 -5 22 0 0 0 chr13 63372619 63372641 -56372257 + AT_rich Low_complexity Low_complexity 1 22 0 849 299 52 31 chr13 63372688 63373255 -56371643 + L1MEc LINE L1 2183 2736 -3479 1919 159 118 23 chr13 63373255 63373646 -56371252 - MSTA LTR MaLR 0 428 1 7601 201 49 8 chr13 63373646 63375232 -56369666 - MSTA-int LTR MaLR 0 1651 1 1610 183 174 8 chr13 63375232 63375599 -56369299 - MSTA LTR MaLR 0 428 1 849 299 52 31 chr13 63375599 63375952 -56368946 + L1MEc LINE L1 2735 3088 -3127 23 33 0 0 chr13 63377466 63377496 -56367402 + AT_rich Low_complexity Low_complexity 1 30 0 441 264 121 22 chr13 63378512 63378743 -56366155 - L1M4 LINE L1 -933 5213 4960 5364 134 6 0 chr13 63379022 63379865 -56365033 - L1PA13 LINE L1 -16 6147 5300 2157 187 26 23 chr13 63380158 63380586 -56364312 - MSTB1 LTR MaLR 0 432 4 2032 119 44 0 chr13 63380713 63381006 -56363892 + AluSg SINE Alu 3 308 -2 343 122 0 0 chr13 63381075 63381124 -56363774 + MLT1A1 LTR MaLR 2 50 -315 589 157 11 5 chr13 63381125 63381230 -56363668 + MSTD LTR MaLR 3 94 -302 1054 119 77 0 chr13 63381233 63381401 -56363497 - AluSx SINE Alu -131 181 1 894 245 193 25 chr13 63381403 63381999 -56362899 + L1M4c LINE L1 1505 2200 -4184 337 267 9 9 chr13 63382045 63382150 -56362748 + (TA)n Simple_repeat Simple_repeat 2 106 0 785 152 66 81 chr13 63382185 63382382 -56362516 - MLT1A1 LTR MaLR 0 365 172 1501 243 57 3 chr13 63382455 63383019 -56361879 + L1M4c LINE L1 2956 3549 -2833 24 32 0 0 chr13 63383144 63383175 -56361723 + AT_rich Low_complexity Low_complexity 1 31 0 442 293 17 29 chr13 63383576 63383750 -56361148 - L1ME LINE L1 -461 5709 5538 317 301 129 10 chr13 63383922 63384131 -56360767 - L1ME LINE L1 -817 5329 5096 27 29 0 0 chr13 63384936 63384970 -56359928 + AT_rich Low_complexity Low_complexity 1 34 0 2229 63 18 0 chr13 63385047 63385333 -56359565 + AluY SINE Alu 1 291 -20 24 32 0 0 chr13 63385338 63385369 -56359529 + AT_rich Low_complexity Low_complexity 1 31 0 2157 182 91 0 chr13 63385422 63385552 -56359346 - L1MA9 LINE L1 -12 6300 6183 333 0 0 0 chr13 63385552 63385589 -56359309 + (TG)n Simple_repeat Simple_repeat 2 38 0 2157 182 91 0 chr13 63385589 63385897 -56359001 - L1MA9 LINE L1 -129 6183 5822 232 252 10 78 chr13 63385906 63386009 -56358889 + L1MA9 LINE L1 5718 5813 -478 1560 193 3 23 chr13 63386339 63386639 -56358259 + AluJo SINE Alu 2 295 -17 21 36 0 0 chr13 63386855 63386883 -56358015 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 63386906 63386929 -56357969 + AT_rich Low_complexity Low_complexity 1 23 0 204 228 0 0 chr13 63389577 63389634 -56355264 + (TA)n Simple_repeat Simple_repeat 1 57 0 21 36 0 0 chr13 63391061 63391089 -56353809 + AT_rich Low_complexity Low_complexity 1 28 0 2311 72 0 23 chr13 63391379 63391686 -56353212 - AluY SINE Alu -11 300 1 245 35 0 0 chr13 63392149 63392178 -56352720 - U2 snRNA snRNA -159 29 1 32 57 0 0 chr13 63394672 63394725 -56350173 + AT_rich Low_complexity Low_complexity 1 53 0 370 299 71 57 chr13 63394744 63394955 -56349943 + MIR SINE MIR 3 216 -46 192 184 0 0 chr13 63395169 63395218 -56349680 + GA-rich Low_complexity Low_complexity 2 50 0 23 0 0 0 chr13 63395314 63395337 -56349561 + AT_rich Low_complexity Low_complexity 1 23 0 270 354 115 41 chr13 63395432 63395892 -56349006 + L2 LINE L2 619 1112 -2202 234 350 128 0 chr13 63396141 63396258 -56348640 + L2 LINE L2 1490 1621 -1693 3591 218 46 7 chr13 63396560 63397576 -56347322 - L1MB4 LINE L1 -1 6179 5129 262 240 0 0 chr13 63397668 63397743 -56347155 + L1MB4 LINE L1 6105 6179 -1 207 125 0 0 chr13 63397842 63397882 -56347016 + (TA)n Simple_repeat Simple_repeat 1 40 0 3286 248 26 31 chr13 63397882 63398960 -56345938 - L1MB4 LINE L1 -1026 5120 4048 23 33 0 0 chr13 63399095 63399125 -56345773 + AT_rich Low_complexity Low_complexity 1 30 0 459 304 69 5 chr13 63401149 63401353 -56343545 - MIR SINE MIR -10 252 36 293 315 56 0 chr13 63401399 63401561 -56343337 - MER112 DNA MER1_type -9 251 81 670 262 27 21 chr13 63402329 63402528 -56342370 - LTR40b LTR ERVL -2 460 271 * 683 264 20 15 chr13 63402526 63402723 -56342175 - LTR40b LTR ERVL -156 306 109 807 128 0 0 chr13 63403778 63403903 -56340995 - L1MA10 LINE L1 0 6334 6210 2396 209 6 4 chr13 63403908 63404390 -56340508 + L1MB1 LINE L1 5677 6159 -30 358 110 41 0 chr13 63404446 63404519 -56340379 + L1MA10 LINE L1 6257 6332 -2 24 53 0 0 chr13 63404662 63404700 -56340198 + AT_rich Low_complexity Low_complexity 1 38 0 2131 103 3 3 chr13 63405352 63405652 -56339246 + AluSc SINE Alu 1 300 -9 321 253 0 0 chr13 63406021 63406108 -56338790 + (CTA)n Simple_repeat Simple_repeat 3 89 0 22 35 0 0 chr13 63407922 63407951 -56336947 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr13 63408226 63408281 -56336617 + AT_rich Low_complexity Low_complexity 1 55 0 998 172 30 84 chr13 63408753 63409049 -56335849 - LTR4 LTR ERV1 0 596 317 472 289 20 49 chr13 63409241 63409445 -56335453 - LTR4 LTR ERV1 -396 200 3 183 303 76 48 chr13 63409516 63409661 -56335237 + L2 LINE L2 1738 1886 -1428 1219 322 85 44 chr13 63409662 63410478 -56334420 + L2 LINE L2 2020 2868 -446 356 323 192 14 chr13 63410550 63410847 -56334051 + L2 LINE L2 2960 3309 -4 1485 152 40 71 chr13 63411795 63412188 -56332710 - MER67C LTR ERV1 -247 267 1 25 31 0 0 chr13 63412665 63412697 -56332201 + AT_rich Low_complexity Low_complexity 1 32 0 411 153 0 0 chr13 63412827 63412899 -56331999 - L1MA5 LINE L1 -3 6297 6226 469 266 63 13 chr13 63413333 63413491 -56331407 - MIR SINE MIR -57 205 40 27 0 0 0 chr13 63413560 63413587 -56331311 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr13 63413659 63413695 -56331203 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 63413958 63413980 -56330918 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr13 63413985 63414028 -56330870 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 483 147 55 0 chr13 63414032 63414141 -56330757 + L1MA9 LINE L1 6197 6311 -1 2228 69 41 0 chr13 63414323 63414614 -56330284 + AluY SINE Alu 1 303 -8 121 27 0 0 chr13 63414637 63414786 -56330112 + AT_rich Low_complexity Low_complexity 1 149 0 403 324 79 35 chr13 63415708 63415998 -56328900 - L2 LINE L2 -133 3180 2878 4279 245 69 33 chr13 63416139 63416466 -56328432 - Cheshire DNA MER1_type -3 2417 2103 1967 157 0 0 chr13 63416466 63416765 -56328133 - AluSx SINE Alu -13 299 1 4279 245 69 33 chr13 63416765 63417885 -56327013 - Cheshire DNA MER1_type -317 2103 918 2316 105 0 0 chr13 63418086 63418392 -56326506 + AluSg1 SINE Alu 4 309 0 2035 103 7 7 chr13 63418548 63418848 -56326050 - AluSc SINE Alu -9 300 1 2216 108 0 0 chr13 63419859 63420156 -56324742 - AluSc SINE Alu -12 297 1 728 232 11 28 chr13 63420156 63420326 -56324572 + MSTD LTR MaLR 220 388 -8 1814 138 54 38 chr13 63421248 63421617 -56323281 + THE1C LTR MaLR 1 375 0 446 222 0 0 chr13 63422048 63422138 -56322760 - FLAM_A SINE Alu -10 132 43 29 0 0 0 chr13 63422231 63422260 -56322638 + AT_rich Low_complexity Low_complexity 1 29 0 1783 101 26 4 chr13 63422422 63422689 -56322209 + MER51A LTR ERV1 361 633 -1 47 33 0 0 chr13 63423680 63423741 -56321157 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr13 63424334 63424356 -56320542 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 63424457 63424483 -56320415 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr13 63424717 63424749 -56320149 + AT_rich Low_complexity Low_complexity 1 32 0 186 373 82 0 chr13 63426232 63426342 -56318556 + L2 LINE L2 2967 3085 -228 21 0 0 0 chr13 63426503 63426524 -56318374 + AT_rich Low_complexity Low_complexity 1 21 0 215 30 0 30 chr13 63428626 63428659 -56316239 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2141 103 6 10 chr13 63428659 63428970 -56315928 + AluY SINE Alu 2 311 0 216 0 0 0 chr13 63429210 63429234 -56315664 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 27 0 0 0 chr13 63429820 63429847 -56315051 + AT_rich Low_complexity Low_complexity 1 27 0 329 322 92 13 chr13 63430693 63430920 -56313978 + L1ME LINE L1 5397 5641 -523 21 0 0 0 chr13 63431162 63431183 -56313715 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 63432060 63432087 -56312811 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr13 63432323 63432350 -56312548 + AT_rich Low_complexity Low_complexity 1 27 0 264 312 47 77 chr13 63432485 63432539 -56312359 - MLT1H1 LTR MaLR -293 262 208 1561 158 180 11 chr13 63432539 63432905 -56311993 + MSTA LTR MaLR 1 428 0 264 312 47 77 chr13 63432905 63433020 -56311878 - MLT1H1 LTR MaLR -347 208 98 369 43 0 0 chr13 63433151 63433198 -56311700 + (CA)n Simple_repeat Simple_repeat 2 48 0 2681 20 0 0 chr13 63433236 63433536 -56311362 - AluYb8 SINE Alu -18 300 1 1236 225 88 21 chr13 63433731 63434413 -56310485 + L1MDa LINE L1 2195 2913 -3627 205 159 45 0 chr13 63434441 63434485 -56310413 + (TA)n Simple_repeat Simple_repeat 2 47 0 689 318 49 62 chr13 63435345 63435833 -56309065 + L2 LINE L2 2829 3310 -3 7119 159 19 4 chr13 63435890 63437170 -56307728 - HSMAR2 DNA Mariner -1 1301 2 21 0 0 0 chr13 63437672 63437693 -56307205 + AT_rich Low_complexity Low_complexity 1 21 0 346 338 7 0 chr13 63439413 63439552 -56305346 - ERVL LTR ERVL -1484 4280 4141 378 353 85 35 chr13 63439779 63440062 -56304836 - ERVL LTR ERVL -1843 3811 3515 380 316 92 53 chr13 63440299 63440603 -56304295 - ERVL LTR ERVL -2441 2555 2240 655 314 41 19 chr13 63440736 63441007 -56303891 - ERVL LTR ERVL -3096 1900 1624 2702 101 0 8 chr13 63441218 63441585 -56303313 + THE1B LTR MaLR 1 364 0 639 335 86 10 chr13 63441712 63442097 -56302801 - ERVL LTR ERVL -3855 1141 728 23 54 0 0 chr13 63442159 63442196 -56302702 + AT_rich Low_complexity Low_complexity 1 37 0 4207 192 10 15 chr13 63442196 63443112 -56301786 - L1MB1 LINE L1 -4 6164 5254 21 71 0 0 chr13 63443327 63443369 -56301529 + AT_rich Low_complexity Low_complexity 1 42 0 29 47 0 0 chr13 63443907 63443950 -56300948 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 63444284 63444306 -56300592 + AT_rich Low_complexity Low_complexity 1 22 0 9208 219 82 22 chr13 63444312 63444979 -56299919 + L1MB2 LINE L1 22 648 -5734 183 80 0 0 chr13 63444979 63445004 -56299894 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9208 219 82 22 chr13 63445004 63447064 -56297834 + L1MB2 LINE L1 648 2584 -3798 236 30 30 0 chr13 63447064 63447097 -56297801 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1844 147 0 30 chr13 63447099 63447398 -56297500 - AluSx SINE Alu -22 290 1 9208 219 82 22 chr13 63447398 63448107 -56296791 + L1MB2 LINE L1 2584 3665 -2717 4084 210 38 16 chr13 63448103 63449535 -56295363 + L1MB2 LINE L1 4934 6400 -7 * 303 235 23 68 chr13 63449567 63449699 -56295199 + L1MC5 LINE L1 7609 7734 -227 1721 175 131 57 chr13 63449699 63449815 -56295083 - MER47B DNA MER2_type -1906 417 311 2084 149 0 29 chr13 63449815 63450158 -56294740 + MER1B DNA MER1_type 5 337 0 1721 175 131 57 chr13 63450158 63450429 -56294469 - MER47B DNA MER2_type -2012 311 1 290 200 27 0 chr13 63450493 63450568 -56294330 + L1MC4 LINE L1 7925 8001 -41 229 378 0 0 chr13 63450900 63450990 -56293908 - L1MC/D LINE L1 -2164 5644 5555 648 241 35 0 chr13 63451922 63452067 -56292831 + MER8 DNA MER2_type 3 152 -87 295 44 22 0 chr13 63452067 63452112 -56292786 - L1MA6 LINE L1 -401 5899 5854 341 358 45 0 chr13 63452189 63452323 -56292575 + LTR16A1 LTR ERVL 7 146 -311 536 198 9 9 chr13 63452524 63452640 -56292258 - MER58B DNA MER1_type 0 341 226 2125 209 26 35 chr13 63452640 63453572 -56291326 + L1M3 LINE L1 4756 5677 -491 421 236 9 9 chr13 63453602 63453708 -56291190 + LTR16A1 LTR ERVL 352 457 0 36 62 0 0 chr13 63453948 63454012 -56290886 + AT_rich Low_complexity Low_complexity 1 64 0 1167 226 154 88 chr13 63454034 63454535 -56290363 + MER39 LTR ERV1 1 707 0 237 275 14 0 chr13 63454536 63454605 -56290293 + (TA)n Simple_repeat Simple_repeat 1 70 0 441 0 0 0 chr13 63456015 63456064 -56288834 + (TA)n Simple_repeat Simple_repeat 1 49 0 186 366 57 32 chr13 63456100 63456223 -56288675 - MIR SINE MIR -62 146 21 286 278 0 79 chr13 63456394 63456520 -56288378 + MER5A DNA MER1_type 1 116 -73 204 150 0 50 chr13 63456872 63456932 -56287966 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 33 25 0 0 chr13 63456933 63456973 -56287925 + AT_rich Low_complexity Low_complexity 1 40 0 185 136 0 23 chr13 63457620 63457664 -56287234 + (GA)n Simple_repeat Simple_repeat 1 43 0 828 237 22 56 chr13 63458622 63458854 -56286044 - MER58A DNA MER1_type 0 224 1 234 349 59 33 chr13 63458868 63459020 -56285878 + L3 LINE CR1 510 665 -912 249 33 0 0 chr13 63459088 63459118 -56285780 + (TA)n Simple_repeat Simple_repeat 2 31 0 291 108 88 0 chr13 63459309 63459411 -56285487 + (TA)n Simple_repeat Simple_repeat 2 112 0 485 204 0 19 chr13 63459423 63459526 -56285372 - AluJ/FLAM SINE Alu -211 101 1 32 0 0 0 chr13 63459947 63459979 -56284919 + AT_rich Low_complexity Low_complexity 1 32 0 29 60 0 0 chr13 63460280 63460330 -56284568 + AT_rich Low_complexity Low_complexity 1 50 0 231 125 0 0 chr13 63460564 63460604 -56284294 + (CA)n Simple_repeat Simple_repeat 1 40 0 221 330 165 0 chr13 63460891 63460994 -56283904 + L2 LINE L2 2541 2660 -654 1360 234 62 31 chr13 63460994 63461443 -56283455 + MLT1C LTR MaLR 1 463 -4 461 335 92 17 chr13 63461506 63461825 -56283073 + L2 LINE L2 2671 3011 -302 651 209 118 51 chr13 63461986 63462282 -56282616 + MER33 DNA MER1_type 1 316 -8 2266 93 0 0 chr13 63462477 63462766 -56282132 + AluY SINE Alu 1 289 -22 808 188 50 11 chr13 63463097 63463278 -56281620 - L1MB1 LINE L1 -8 6181 5994 1921 158 119 13 chr13 63463278 63463665 -56281233 + MSTA LTR MaLR 1 428 0 8213 213 22 5 chr13 63463666 63465275 -56279623 + MSTA-int LTR MaLR 2 1637 -14 1373 199 158 19 chr13 63465339 63465706 -56279192 + MSTB LTR MaLR 4 421 -5 980 190 25 0 chr13 63465708 63465908 -56278990 - L1MB1 LINE L1 -171 5997 5793 * 2268 177 28 5 chr13 63465895 63466319 -56278579 + L1MB1 LINE L1 5340 5773 -395 1369 291 55 26 chr13 63466763 63467707 -56277191 - L1M4 LINE L1 -1260 4886 3916 221 180 16 33 chr13 63467863 63467924 -56276974 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 221 172 52 0 chr13 63467932 63467990 -56276908 + (TA)n Simple_repeat Simple_repeat 1 61 0 1173 233 84 35 chr13 63468443 63468645 -56276253 - MLT1D LTR MaLR -2 503 312 226 0 0 56 chr13 63468645 63468681 -56276217 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1173 233 84 35 chr13 63468681 63468847 -56276051 - MLT1D LTR MaLR -193 312 117 244 209 0 60 chr13 63468998 63469065 -56275833 - LTR33 LTR ERVL -4 517 455 248 308 195 24 chr13 63469352 63469521 -56275377 + MIR SINE MIR 65 262 0 316 274 34 60 chr13 63470658 63470775 -56274123 + MIR SINE MIR 28 141 -121 24 32 0 0 chr13 63470853 63470884 -56274014 + AT_rich Low_complexity Low_complexity 1 31 0 180 176 0 0 chr13 63471266 63471300 -56273598 + (CA)n Simple_repeat Simple_repeat 2 35 0 2152 49 45 0 chr13 63472935 63473202 -56271696 + AluY SINE Alu 1 279 -32 315 71 0 0 chr13 63473204 63473246 -56271652 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 214 50 50 0 chr13 63475027 63475067 -56269831 + (TA)n Simple_repeat Simple_repeat 1 42 0 337 159 0 140 chr13 63475132 63475239 -56269659 + L1MC4 LINE L1 6612 6703 -1339 22 56 0 0 chr13 63476287 63476323 -56268575 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 63476721 63476743 -56268155 + AT_rich Low_complexity Low_complexity 1 22 0 1639 179 7 17 chr13 63478020 63478322 -56266576 - AluJb SINE Alu -13 299 1 679 348 39 11 chr13 63478995 63479277 -56265621 + LTR16A LTR ERVL 161 450 0 1764 148 52 0 chr13 63479866 63480157 -56264741 + AluSx SINE Alu 1 306 -6 27 0 0 0 chr13 63480204 63480231 -56264667 + AT_rich Low_complexity Low_complexity 1 27 0 281 217 0 0 chr13 63481125 63481185 -56263713 - MLT2A2 LTR ERVL -3 450 391 2090 213 9 44 chr13 63481223 63481673 -56263225 - MLT2B3 LTR ERVL -39 515 82 568 119 24 0 chr13 63481766 63481850 -56263048 - MLT2B3 LTR ERVL -466 88 3 1557 181 3 31 chr13 63482203 63482496 -56262402 + AluJb SINE Alu 1 285 -27 281 213 0 0 chr13 63483039 63483100 -56261798 - L1MC4 LINE L1 -522 7520 7460 618 214 99 45 chr13 63483103 63483346 -56261552 - L1MC4 LINE L1 -679 7363 7108 31 26 0 0 chr13 63483653 63483691 -56261207 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 63483854 63483876 -56261022 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr13 63484494 63484530 -56260368 + AT_rich Low_complexity Low_complexity 1 36 0 1391 219 129 7 chr13 63484981 63485424 -56259474 + L1MB7 LINE L1 4894 5390 -756 307 163 11 109 chr13 63485402 63485494 -56259404 + L1MB7 LINE L1 5644 5726 -452 * 595 172 40 103 chr13 63485499 63485673 -56259225 + L1MB7 LINE L1 5978 6140 -44 2177 98 0 3 chr13 63485684 63485980 -56258918 - AluY SINE Alu 0 311 17 237 333 0 0 chr13 63486017 63486074 -56258824 + (CGTG)n Simple_repeat Simple_repeat 1 57 0 689 238 21 155 chr13 63486482 63486902 -56257996 - L2 LINE L2 -35 3278 2915 593 298 43 21 chr13 63489949 63490184 -56254714 - MLT1B LTR MaLR 0 467 228 1975 152 43 3 chr13 63490196 63490518 -56254380 + LTR28 LTR ERV1 1 335 -685 530 282 111 24 chr13 63490507 63490759 -56254139 + LTR27 LTR ERV1 363 636 0 * 631 249 53 34 chr13 63490771 63490980 -56253918 - MLT1B LTR MaLR -175 215 3 799 237 51 69 chr13 63490991 63491395 -56253503 - MLT1A1 LTR MaLR -13 352 3 197 327 36 45 chr13 63491470 63491580 -56253318 - L2 LINE L2 -1330 1984 1876 21 0 0 0 chr13 63492358 63492379 -56252519 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 63493113 63493136 -56251762 + AT_rich Low_complexity Low_complexity 1 23 0 1934 143 0 0 chr13 63493201 63493488 -56251410 + AluSx SINE Alu 1 287 -25 201 114 57 0 chr13 63493504 63493539 -56251359 + A-rich Low_complexity Low_complexity 5 41 0 575 263 42 56 chr13 63494275 63494488 -56250410 + MER97c DNA MER1_type? 1 210 -880 1636 275 76 35 chr13 63494493 63495287 -56249611 - L1ME2 LINE L1 -2 6162 5337 185 299 105 87 chr13 63495552 63495886 -56249012 + L2 LINE L2 2967 3306 -7 1392 187 62 57 chr13 63496165 63496550 -56248348 + MLT1B LTR MaLR 4 390 0 1687 170 0 13 chr13 63496978 63497278 -56247620 - AluJo SINE Alu -16 296 1 21 36 0 0 chr13 63497599 63497627 -56247271 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 63498160 63498189 -56246709 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr13 63498939 63498992 -56245906 + AT_rich Low_complexity Low_complexity 1 53 0 24 32 0 0 chr13 63500088 63500119 -56244779 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 63500377 63500398 -56244500 + AT_rich Low_complexity Low_complexity 1 21 0 311 298 1 9 chr13 63500400 63500526 -56244372 + L1ME3 LINE L1 5259 5360 -786 369 253 79 47 chr13 63500589 63500779 -56244119 - L1ME3A LINE L1 -223 5947 5752 1126 281 54 38 chr13 63500780 63501171 -56243727 + LTR40a LTR ERVL 118 514 -5 432 344 58 19 chr13 63501197 63501715 -56243183 + L1ME3 LINE L1 5353 5890 -272 864 313 77 87 chr13 63501824 63502641 -56242257 - L2 LINE L2 -884 2430 1622 5741 264 44 57 chr13 63502668 63504044 -56240854 + L1MB7 LINE L1 22 1414 -5268 1954 148 49 22 chr13 63504044 63504409 -56240489 + THE1C LTR MaLR 1 375 0 5741 264 44 57 chr13 63504409 63505633 -56239265 + L1MB7 LINE L1 1414 2652 -4030 378 76 0 101 chr13 63505633 63505712 -56239186 + L1PA6 LINE L1 6084 6154 0 5741 264 44 57 chr13 63505712 63505967 -56238931 + L1MB7 LINE L1 2652 2909 -3773 2365 153 39 5 chr13 63505967 63506379 -56238519 - MSTA LTR MaLR 0 428 3 5741 264 44 57 chr13 63506379 63509746 -56235152 + L1MB7 LINE L1 2909 6239 -443 1503 155 52 86 chr13 63509746 63510132 -56234766 - THE1C LTR MaLR 0 375 3 9755 140 41 7 chr13 63510134 63511660 -56233238 - THE1C-int LTR MaLR 0 1580 4 1838 118 60 79 chr13 63511662 63512043 -56232855 - THE1C LTR MaLR 0 375 2 608 218 14 0 chr13 63512048 63512190 -56232708 + L1MB7 LINE L1 6239 6382 -300 826 207 6 0 chr13 63512192 63512361 -56232537 + L1MB7 LINE L1 6488 6657 -25 1777 312 65 42 chr13 63512506 63512678 -56232220 - L2 LINE L2 -1819 1495 1329 754 191 0 0 chr13 63512678 63512804 -56232094 + FLAM_C SINE Alu 2 127 -6 1777 312 65 42 chr13 63512804 63513523 -56231375 - L2 LINE L2 -1985 1329 583 320 184 39 0 chr13 63514619 63514722 -56230176 + (TA)n Simple_repeat Simple_repeat 1 107 0 1568 241 55 36 chr13 63514851 63515325 -56229573 + MLT1D LTR MaLR 23 505 0 22 35 0 0 chr13 63516553 63516582 -56228316 + AT_rich Low_complexity Low_complexity 1 29 0 1954 149 0 3 chr13 63517350 63517651 -56227247 + AluSx SINE Alu 1 300 -12 278 367 50 25 chr13 63518033 63518232 -56226666 + MIR SINE MIR 21 224 -38 248 363 82 7 chr13 63519428 63519574 -56225324 - L2 LINE L2 -316 2997 2841 343 365 104 12 chr13 63519738 63519987 -56224911 + HAL1b LINE L1 337 608 -740 5493 121 21 0 chr13 63521356 63521463 -56223435 - L1PA15 LINE L1 -3 6162 6059 2201 161 45 29 chr13 63521463 63521505 -56223393 + MSTA LTR MaLR 1 41 -387 1910 126 17 3 chr13 63521505 63521799 -56223099 - AluSx SINE Alu -14 298 1 2201 161 45 29 chr13 63521799 63522177 -56222721 + MSTA LTR MaLR 41 428 0 5493 121 21 0 chr13 63522177 63523257 -56221641 - L1PA15 LINE L1 -106 6059 4968 243 265 48 24 chr13 63523362 63523445 -56221453 + MLT1I LTR MaLR 39 123 -286 25 31 0 0 chr13 63523787 63523819 -56221079 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr13 63524300 63524326 -56220572 + AT_rich Low_complexity Low_complexity 1 26 0 497 0 0 52 chr13 63524690 63524767 -56220131 + (TA)n Simple_repeat Simple_repeat 2 74 0 21 36 0 0 chr13 63524805 63524833 -56220065 + AT_rich Low_complexity Low_complexity 1 28 0 668 344 119 25 chr13 63525373 63526004 -56218894 + L2 LINE L2 2015 2704 -610 22 0 0 0 chr13 63527081 63527103 -56217795 + AT_rich Low_complexity Low_complexity 1 22 0 198 118 0 0 chr13 63527406 63527440 -56217458 + (TG)n Simple_repeat Simple_repeat 1 34 0 1627 155 6 50 chr13 63527846 63528163 -56216735 + AluJb SINE Alu 1 303 -9 199 102 20 20 chr13 63528163 63528212 -56216686 + (TA)n Simple_repeat Simple_repeat 1 49 0 268 297 0 0 chr13 63529017 63529091 -56215807 - L1P LINE L1 -1995 4151 4078 21 0 0 0 chr13 63529970 63529991 -56214907 + AT_rich Low_complexity Low_complexity 1 21 0 373 134 15 0 chr13 63530596 63530663 -56214235 + L1PB3 LINE L1 6080 6147 -7 219 42 0 62 chr13 63530675 63530723 -56214175 + (TA)n Simple_repeat Simple_repeat 2 46 0 308 234 0 43 chr13 63530953 63531047 -56213851 - L1MC4 LINE L1 -1337 6705 6616 215 238 0 0 chr13 63531049 63531091 -56213807 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 1539 319 85 14 chr13 63531533 63532044 -56212854 - HERVL40 LTR ERVL -2335 3195 2619 192 40 0 0 chr13 63532044 63532069 -56212829 + (CAG)n Simple_repeat Simple_repeat 3 27 0 1539 319 85 14 chr13 63532069 63532265 -56212633 - HERVL40 LTR ERVL -2911 2619 2438 1294 268 14 14 chr13 63532717 63533072 -56211826 - MLT1A1 LTR MaLR 0 365 11 1387 184 34 38 chr13 63534073 63534366 -56210532 + AluJo SINE Alu 3 294 -18 1527 176 10 17 chr13 63534450 63534740 -56210158 - AluJo SINE Alu -22 290 3 24 0 0 0 chr13 63534797 63534821 -56210077 + AT_rich Low_complexity Low_complexity 1 24 0 308 316 81 29 chr13 63535381 63535590 -56209308 - L2 LINE L2 0 3313 3094 1248 231 68 86 chr13 63535718 63536232 -56208666 - MLT1D LTR MaLR 0 505 1 386 242 0 8 chr13 63536875 63536995 -56207903 + CT-rich Low_complexity Low_complexity 4 122 0 624 311 77 5 chr13 63537124 63537346 -56207552 - MIR SINE MIR -21 241 4 276 30 0 0 chr13 63537520 63537553 -56207345 + (TG)n Simple_repeat Simple_repeat 2 34 0 186 333 53 0 chr13 63537560 63537635 -56207263 - MIR SINE MIR -67 141 63 885 256 0 19 chr13 63537922 63538129 -56206769 - MER58A DNA MER1_type 0 224 22 236 346 40 0 chr13 63538339 63538440 -56206458 - MIR SINE MIR -150 112 8 22 0 0 0 chr13 63538568 63538590 -56206308 + AT_rich Low_complexity Low_complexity 1 22 0 32 57 0 0 chr13 63539232 63539285 -56205613 + AT_rich Low_complexity Low_complexity 1 53 0 1526 155 76 51 chr13 63540761 63541116 -56203782 + THE1B LTR MaLR 1 364 0 10957 101 26 1 chr13 63541118 63542658 -56202240 + THE1B-int LTR MaLR 3 1580 0 1807 144 19 45 chr13 63542658 63543032 -56201866 + THE1B LTR MaLR 1 364 0 200 260 0 0 chr13 63543698 63543748 -56201150 + GA-rich Low_complexity Low_complexity 2 51 0 348 228 15 29 chr13 63544147 63544283 -56200615 + CT-rich Low_complexity Low_complexity 3 136 0 482 161 21 0 chr13 63544400 63544493 -56200405 + L1MB1 LINE L1 6069 6163 -5 291 28 0 0 chr13 63544493 63544529 -56200369 + (GA)n Simple_repeat Simple_repeat 1 36 0 4419 44 2 0 chr13 63544617 63545165 -56199733 - L1PA4 LINE L1 0 6155 5607 7264 39 5 1 chr13 63545165 63546300 -56198598 + L1PA4 LINE L1 4464 5603 -552 1501 172 41 17 chr13 63546323 63546613 -56198285 + THE1C LTR MaLR 79 375 0 284 259 0 0 chr13 63546613 63546671 -56198227 + L2 LINE L2 3210 3267 -5 223 303 30 0 chr13 63547416 63547482 -56197416 + L2 LINE L2 3246 3313 0 25 51 0 0 chr13 63547630 63547669 -56197229 + AT_rich Low_complexity Low_complexity 1 39 0 21 82 0 0 chr13 63547715 63547764 -56197134 + AT_rich Low_complexity Low_complexity 1 49 0 183 80 0 0 chr13 63547948 63547973 -56196925 + (TG)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chr13 63548086 63548119 -56196779 + AT_rich Low_complexity Low_complexity 1 33 0 474 326 113 45 chr13 63548502 63548962 -56195936 + MLT1H LTR MaLR 5 537 -12 259 219 0 27 chr13 63548966 63549039 -56195859 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 65 0 0 chr13 63549387 63549433 -56195465 + AT_rich Low_complexity Low_complexity 1 46 0 1451 193 23 33 chr13 63549445 63549746 -56195152 + AluJo SINE Alu 1 298 -14 21 89 0 0 chr13 63550835 63550891 -56194007 + AT_rich Low_complexity Low_complexity 1 56 0 3866 139 6 14 chr13 63551016 63551656 -56193242 - MER41B LTR ERV1 0 635 1 380 337 166 34 chr13 63551670 63552085 -56192813 + HAL1 LINE L1 1415 1884 -623 680 243 7 51 chr13 63552249 63552552 -56192346 - MLT1A1 LTR MaLR 0 609 11 367 276 0 48 chr13 63552563 63552668 -56192230 - MER5A DNA MER1_type -86 103 4 23 33 0 0 chr13 63552815 63552845 -56192053 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 63553111 63553137 -56191761 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 63553210 63553245 -56191653 + AT_rich Low_complexity Low_complexity 1 35 0 450 0 0 0 chr13 63553432 63553482 -56191416 + (TG)n Simple_repeat Simple_repeat 1 50 0 1852 117 3 18 chr13 63553484 63553767 -56191131 - AluSx SINE Alu -33 279 1 391 0 0 0 chr13 63553772 63553818 -56191080 + MADE1 DNA Mariner 35 80 0 343 320 27 40 chr13 63554434 63554584 -56190314 + ERVL LTR ERVL 1471 1618 -4146 1189 323 100 41 chr13 63554937 63555341 -56189557 - L1ME LINE L1 -671 5491 5112 2192 97 0 3 chr13 63555341 63555640 -56189258 + AluSq SINE Alu 1 298 -15 1189 323 100 41 chr13 63555640 63555945 -56188953 - L1ME LINE L1 -1050 5112 4826 210 37 0 0 chr13 63555945 63555972 -56188926 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1189 323 100 41 chr13 63555972 63556588 -56188310 - L1ME LINE L1 -1336 4826 4086 23 33 0 0 chr13 63556626 63556656 -56188242 + AT_rich Low_complexity Low_complexity 1 30 0 208 188 0 21 chr13 63556855 63556903 -56187995 + T-rich Low_complexity Low_complexity 2 48 0 312 208 131 19 chr13 63557239 63557387 -56187511 + L1M4 LINE L1 1029 1165 -5040 345 233 7 13 chr13 63557721 63557871 -56187027 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 31 88 0 0 chr13 63557937 63558017 -56186881 + AT_rich Low_complexity Low_complexity 1 80 0 379 250 69 7 chr13 63558087 63558231 -56186667 + L1M4 LINE L1 4522 4674 -1472 417 330 14 0 chr13 63558243 63558458 -56186440 + L1M4 LINE L1 4826 5043 -1103 781 94 0 8 chr13 63560007 63560096 -56184802 - L1PA4 LINE L1 -1884 4262 4175 9433 31 0 1 chr13 63560096 63561988 -56182910 + L1PA4 LINE L1 4260 6150 -5 781 94 0 8 chr13 63561988 63562029 -56182869 - L1P LINE L1 -1971 4175 4135 341 401 31 5 chr13 63562735 63562927 -56181971 - MIR SINE MIR -64 198 2 215 218 20 59 chr13 63563229 63563330 -56181568 + A-rich Low_complexity Low_complexity 5 101 0 2560 181 69 4 chr13 63563450 63563970 -56180928 + L1MC2 LINE L1 5319 5872 -472 615 125 16 8 chr13 63563970 63564098 -56180800 + (TA)n Simple_repeat Simple_repeat 1 129 0 1088 262 142 12 chr13 63564187 63564519 -56180379 + MER21B LTR ERV1 19 393 -470 4238 266 94 26 chr13 63564539 63564795 -56180103 + L1M4 LINE L1 2184 2421 -3794 2135 109 3 7 chr13 63564795 63565089 -56179809 - AluSc SINE Alu -14 295 3 4238 266 94 26 chr13 63565089 63565503 -56179395 + L1M4 LINE L1 2421 2805 -3410 825 56 0 0 chr13 63565503 63565610 -56179288 + (TAAAA)n Simple_repeat Simple_repeat 4 110 0 4238 266 94 26 chr13 63565610 63566916 -56177982 + L1M4 LINE L1 2805 4297 -1918 312 107 12 143 chr13 63566917 63567001 -56177897 + Tigger2 DNA MER2_type 1 73 -2645 * 2184 159 77 12 chr13 63566992 63567406 -56177492 + Tigger2 DNA MER2_type 2278 2718 0 1000 207 66 3 chr13 63567406 63567710 -56177188 + L1M4 LINE L1 4297 4619 -1596 672 219 38 19 chr13 63567716 63567876 -56177022 + MER70B LTR ERVL 1 163 -415 2190 248 28 8 chr13 63567879 63568350 -56176548 + MER70B LTR ERVL 99 578 0 2839 230 25 18 chr13 63568354 63569229 -56175669 + L1M4 LINE L1 4623 5510 -733 285 136 0 0 chr13 63570023 63570067 -56174831 - MLT2B1 LTR ERVL 0 520 477 27 0 0 0 chr13 63570991 63571018 -56173880 + AT_rich Low_complexity Low_complexity 1 27 0 1716 147 39 3 chr13 63571583 63571868 -56173030 + AluSx SINE Alu 12 306 -6 339 280 103 0 chr13 63571958 63572065 -56172833 - MER58A DNA MER1_type 0 118 1 595 263 88 9 chr13 63572327 63572555 -56172343 + LTR40c LTR ERVL 12 257 -208 303 269 0 0 chr13 63572569 63572647 -56172251 + LTR40b LTR ERVL 385 462 0 417 183 173 0 chr13 63572982 63573086 -56171812 + HERVL40 LTR ERVL 958 1079 -4451 780 277 14 14 chr13 63573392 63573612 -56171286 + HERVL40 LTR ERVL 3208 3427 -2103 2957 299 157 32 chr13 63573731 63573822 -56171076 + L2 LINE L2 1093 1171 -2142 291 28 0 0 chr13 63573822 63573858 -56171040 + (CA)n Simple_repeat Simple_repeat 2 37 0 2957 299 157 32 chr13 63573858 63575539 -56169359 + L2 LINE L2 1171 3081 -232 308 281 115 10 chr13 63575568 63575664 -56169234 + L2 LINE L2 3208 3313 0 2411 72 20 0 chr13 63575796 63575919 -56168979 + AluY SINE Alu 1 120 -191 228 35 0 0 chr13 63575919 63575948 -56168950 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2411 72 20 0 chr13 63575948 63576129 -56168769 + AluY SINE Alu 120 311 0 389 216 96 16 chr13 63576834 63576848 -56168050 - L1MA9 LINE L1 0 6312 6299 638 226 119 21 chr13 63576848 63577083 -56167815 - L1ME1 LINE L1 -9 6157 5900 2080 86 17 8 chr13 63577085 63577441 -56167457 + LTR7 LTR ERV1 1 448 -2 19291 100 27 20 chr13 63577443 63580408 -56164490 + HERVH LTR ERV1 1 2987 -4726 798 153 49 0 chr13 63580402 63580546 -56164352 + HERVH LTR ERV1 3140 3290 -4423 * 3524 95 4 6 chr13 63580536 63581039 -56163859 + HERVH LTR ERV1 3492 3993 -3720 4105 153 0 12 chr13 63581041 63581546 -56163352 + HERVH LTR ERV1 4488 4985 -2728 2625 49 0 3 chr13 63581546 63581851 -56163047 + AluY SINE Alu 3 306 -5 4105 153 0 12 chr13 63581851 63582012 -56162886 + HERVH LTR ERV1 4985 5146 -2567 1381 124 18 5 chr13 63582016 63582233 -56162665 + HERVH LTR ERV1 5600 5819 -1894 * 2304 108 48 13 chr13 63582231 63582610 -56162288 + HERVH LTR ERV1 7322 7713 0 2602 89 87 7 chr13 63582610 63583025 -56161873 + LTR7 LTR ERV1 1 448 -2 948 233 4 9 chr13 63583043 63583271 -56161627 - L1ME1 LINE L1 -272 5894 5668 305 259 34 19 chr13 63583265 63583399 -56161499 + L1ME LINE L1 5527 5663 -511 * 284 303 73 49 chr13 63583400 63583687 -56161211 + L1MC4a LINE L1 5611 5904 -1904 803 151 42 6 chr13 63585974 63586140 -56158758 - L1MA6 LINE L1 0 6300 6129 1646 159 10 10 chr13 63586140 63586435 -56158463 + L1MA6 LINE L1 5811 6105 -195 23 0 0 0 chr13 63586546 63586569 -56158329 + AT_rich Low_complexity Low_complexity 1 23 0 265 233 25 25 chr13 63587221 63587341 -56157557 + (TTAAA)n Simple_repeat Simple_repeat 2 121 0 4834 161 64 4 chr13 63587452 63588668 -56156230 - L1PA16 LINE L1 -3 6163 4880 21 107 0 0 chr13 63588772 63588856 -56156042 + AT_rich Low_complexity Low_complexity 1 84 0 22 56 0 0 chr13 63588910 63588946 -56155952 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr13 63589417 63589461 -56155437 + AT_rich Low_complexity Low_complexity 1 44 0 261 0 0 0 chr13 63590963 63590992 -56153906 + (A)n Simple_repeat Simple_repeat 1 29 0 1094 261 78 23 chr13 63592201 63592937 -56151961 - L1MDa LINE L1 -3435 3105 2322 222 193 18 18 chr13 63592951 63593008 -56151890 + (TA)n Simple_repeat Simple_repeat 1 57 0 2088 278 72 27 chr13 63593027 63593464 -56151434 - L1ME1 LINE L1 -21 6145 5729 306 0 0 0 chr13 63593464 63593498 -56151400 + (TG)n Simple_repeat Simple_repeat 2 35 0 2088 278 72 27 chr13 63593498 63594091 -56150807 - L1ME1 LINE L1 -437 5729 5057 1408 221 31 0 chr13 63594091 63594380 -56150518 + AluJo SINE Alu 1 298 -14 2088 278 72 27 chr13 63594380 63594522 -56150376 - L1ME1 LINE L1 -1109 5057 4923 307 234 54 9 chr13 63594572 63594683 -56150215 - L1ME1 LINE L1 -3742 2404 2289 400 299 18 0 chr13 63594764 63594931 -56149967 - L1ME1 LINE L1 -3826 2320 2151 44 35 0 0 chr13 63594974 63595032 -56149866 + AT_rich Low_complexity Low_complexity 1 58 0 822 167 8 0 chr13 63595049 63595181 -56149717 - AluJb SINE Alu -171 141 9 24 0 0 0 chr13 63595183 63595207 -56149691 + AT_rich Low_complexity Low_complexity 1 24 0 417 314 10 15 chr13 63595410 63595659 -56149239 - L1MDa LINE L1 -4471 2069 1849 5457 79 101 1 chr13 63597492 63598242 -56146656 + LTR12 LTR ERV1 2 826 0 17831 108 16 8 chr13 63598242 63600831 -56144067 + HERV9 LTR ERV1 1 2610 -5789 311 276 10 0 chr13 63600837 63600935 -56143963 + LTR30 LTR ERV1 544 642 -80 2629 77 0 3 chr13 63600936 63601275 -56143623 + LTR12 LTR ERV1 377 714 0 1226 242 95 9 chr13 63601517 63601843 -56143055 + MLT1D LTR MaLR 152 505 0 3047 164 4 0 chr13 63602281 63602776 -56142122 + LOR1a LTR ERV1 1 497 0 1285 156 34 0 chr13 63605153 63605390 -56139508 + L1M3 LINE L1 5285 5529 -804 432 183 0 0 chr13 63605398 63605480 -56139418 + L1MC1 LINE L1 5946 6027 -306 972 176 16 6 chr13 63605481 63605663 -56139235 - L1PB4 LINE L1 -9 6147 5964 1780 151 26 6 chr13 63605664 63605975 -56138923 + L1MC1 LINE L1 6016 6332 -1 654 219 0 8 chr13 63606034 63606177 -56138721 + L1M3 LINE L1 5523 5664 -490 21 36 0 0 chr13 63606177 63606205 -56138693 + AT_rich Low_complexity Low_complexity 1 28 0 205 355 0 0 chr13 63606331 63606393 -56138505 + L2 LINE L2 3203 3264 -49 23 33 0 0 chr13 63606775 63606805 -56138093 + AT_rich Low_complexity Low_complexity 1 30 0 2172 114 3 0 chr13 63607233 63607530 -56137368 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 63609438 63609459 -56135439 + AT_rich Low_complexity Low_complexity 1 21 0 34 24 0 0 chr13 63609892 63609933 -56134965 + AT_rich Low_complexity Low_complexity 1 41 0 322 214 0 0 chr13 63611463 63611519 -56133379 + L2 LINE L2 3184 3239 -33 235 386 55 35 chr13 63611656 63611801 -56133097 + L2 LINE L2 3116 3263 -9 977 305 47 20 chr13 63613054 63613105 -56131793 - LTR16B LTR ERVL -6 458 410 243 0 0 0 chr13 63613105 63613132 -56131766 + (CA)n Simple_repeat Simple_repeat 2 28 0 977 305 47 20 chr13 63613132 63613523 -56131375 - LTR16B LTR ERVL -54 410 4 1331 188 23 6 chr13 63613696 63613987 -56130911 + MER61C LTR ERV1 1 281 -153 311 208 0 0 chr13 63613984 63614037 -56130861 + MER61D LTR ERV1 423 475 -26 * 2389 153 44 2 chr13 63618544 63618955 -56125943 - MSTA LTR MaLR 0 428 1 7990 204 29 5 chr13 63618955 63620567 -56124331 - MSTA-int LTR MaLR 0 1651 1 2350 154 24 9 chr13 63620567 63620989 -56123909 - MSTA LTR MaLR 0 428 1 862 239 47 27 chr13 63621021 63621332 -56123566 - MLT1A2 LTR MaLR 0 374 1 251 298 113 36 chr13 63621711 63621879 -56123019 - L1MEd LINE L1 -5371 748 568 439 229 59 39 chr13 63622400 63622553 -56122345 + L1MC4a LINE L1 6385 6540 -1268 420 303 44 65 chr13 63622567 63622868 -56122030 + L1MC4 LINE L1 7366 7662 -380 2031 112 26 55 chr13 63623179 63623563 -56121335 - THE1C LTR MaLR 0 375 3 2454 66 0 7 chr13 63623946 63624250 -56120648 - AluY SINE Alu -7 304 3 308 295 53 62 chr13 63624436 63624680 -56120218 - MLT1G LTR MaLR -300 290 49 517 283 68 105 chr13 63624762 63625172 -56119726 + L2 LINE L2 1994 2388 -926 200 391 145 7 chr13 63625279 63625576 -56119322 + L2 LINE L2 2385 2722 -592 22 80 0 0 chr13 63625785 63625835 -56119063 + AT_rich Low_complexity Low_complexity 1 50 0 1414 289 59 23 chr13 63625921 63627156 -56117742 - L1ME1 LINE L1 -263 5903 4629 952 255 45 18 chr13 63627172 63627615 -56117283 - L1ME1 LINE L1 -1596 4550 4096 1301 75 3 252 chr13 63627615 63627976 -56116922 + LTR12 LTR ERV1 7 277 -437 271 271 8 68 chr13 63627976 63628109 -56116789 + LTR30 LTR ERV1 544 668 -54 472 123 0 0 chr13 63628109 63628174 -56116724 + LTR12 LTR ERV1 514 578 -136 476 307 26 13 chr13 63628174 63628405 -56116493 - L1ME1 LINE L1 -2035 4111 3878 257 261 0 0 chr13 63628901 63628966 -56115932 + L1 LINE L1 3942 4006 -2140 990 280 63 31 chr13 63629119 63629425 -56115473 + L1M4 LINE L1 4219 4552 -1594 818 171 116 166 chr13 63629425 63629847 -56115051 - MER57A LTR ERV1 0 403 3 990 280 63 31 chr13 63629847 63630093 -56114805 + L1M4 LINE L1 4552 4789 -1357 2255 169 23 30 chr13 63630093 63630413 -56114485 - MSTA LTR MaLR 0 428 110 1497 166 0 0 chr13 63630413 63630648 -56114250 + AluSx SINE Alu 2 236 -76 2255 169 23 30 chr13 63630648 63630758 -56114140 - MSTA LTR MaLR -318 110 1 2229 161 13 5 chr13 63630765 63631151 -56113747 - MSTA-int LTR MaLR -7 1644 1256 1120 157 15 0 chr13 63631162 63631360 -56113538 + L1 LINE L1 3977 4177 -1969 1580 229 27 0 chr13 63631360 63631688 -56113210 - MSTA-int LTR MaLR -392 1188 852 3484 137 67 11 chr13 63631688 63632048 -56112850 - L1PB1 LINE L1 -1 6150 5737 180 111 0 0 chr13 63632048 63632075 -56112823 + (TA)n Simple_repeat Simple_repeat 2 28 0 3484 137 67 11 chr13 63632075 63632355 -56112543 - L1PB1 LINE L1 -414 5737 5474 7012 196 24 2 chr13 63632355 63634040 -56110858 + L1PB1 LINE L1 3756 5480 -671 5138 196 4 4 chr13 63634038 63634965 -56109933 - MSTA-int LTR MaLR -724 927 1 * 1852 179 126 3 chr13 63634965 63635346 -56109552 - MSTA LTR MaLR 0 428 1 840 258 63 36 chr13 63635351 63635827 -56109071 + L1M4 LINE L1 4791 5279 -867 2235 61 41 0 chr13 63636694 63636987 -56107911 - AluY SINE Alu -6 305 1 1409 174 9 0 chr13 63637392 63637622 -56107276 - Tigger3(Golem) DNA MER2_type 0 3029 2798 852 236 6 11 chr13 63637623 63637801 -56107097 - MER21-int LTR ERV1 -1418 2773 2597 1285 328 123 33 chr13 63637809 63638712 -56106186 + L1PA15-16 LINE L1 241 1563 -5286 * 6961 259 83 22 chr13 63638698 63642408 -56102490 + L1PBb LINE L1 690 4645 -1558 325 113 0 65 chr13 63642380 63642442 -56102456 + L1M2 LINE L1 5795 5852 -505 * 225 241 23 23 chr13 63642442 63642529 -56102369 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 1740 195 33 6 chr13 63642529 63642893 -56102005 + L1PB4 LINE L1 5782 6155 -1 243 0 0 0 chr13 63643106 63643133 -56101765 + (TG)n Simple_repeat Simple_repeat 2 28 0 874 265 92 4 chr13 63643141 63643379 -56101519 + Tigger7 DNA MER2_type 9 267 -2220 463 227 0 21 chr13 63643377 63643474 -56101424 + Tigger7 DNA MER2_type 2389 2483 -4 * 24 32 0 0 chr13 63643757 63643788 -56101110 + AT_rich Low_complexity Low_complexity 1 31 0 1692 134 52 85 chr13 63643804 63644192 -56100706 - THE1C LTR MaLR 0 375 1 28 29 0 0 chr13 63644484 63644519 -56100379 + AT_rich Low_complexity Low_complexity 1 35 0 228 379 166 9 chr13 63644675 63644886 -56100012 - MIR SINE MIR -6 256 13 9373 189 22 11 chr13 63646140 63648769 -56096129 - L1PB2 LINE L1 -2 6206 3542 2008 132 0 0 chr13 63648769 63649073 -56095825 - AluSg SINE Alu 0 304 1 9373 189 22 11 chr13 63649073 63649491 -56095407 - L1PB2 LINE L1 -2666 3542 3130 5576 175 47 20 chr13 63649479 63650106 -56094792 - L1PB2 LINE L1 -4385 1819 1211 * 1852 169 0 0 chr13 63650106 63650401 -56094497 + AluSx SINE Alu 3 297 -15 5576 175 47 20 chr13 63650401 63650863 -56094035 - L1PB2 LINE L1 -4993 1211 763 234 91 0 0 chr13 63650863 63650896 -56094002 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5576 175 47 20 chr13 63650896 63651732 -56093166 - L1PB2 LINE L1 -5441 763 1 1159 221 43 25 chr13 63651809 63652198 -56092700 + AluJo SINE Alu 1 394 0 867 106 5 48 chr13 63652202 63652390 -56092508 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 22 35 0 0 chr13 63652444 63652473 -56092425 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr13 63653018 63653055 -56091843 + AT_rich Low_complexity Low_complexity 1 37 0 521 269 14 65 chr13 63653609 63653825 -56091073 + L1ME3 LINE L1 5947 6151 -11 31 44 0 0 chr13 63653826 63653871 -56091027 + AT_rich Low_complexity Low_complexity 1 45 0 22 70 0 0 chr13 63654577 63654620 -56090278 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr13 63654672 63654702 -56090196 + AT_rich Low_complexity Low_complexity 1 30 0 623 297 85 36 chr13 63655057 63655468 -56089430 + LTR68 LTR ERV1 7 437 -303 2297 234 30 11 chr13 63655628 63656191 -56088707 - MER67C LTR ERV1 -136 574 1 1957 120 22 0 chr13 63656624 63656927 -56087971 - AluSx SINE Alu 0 309 1 6292 151 22 38 chr13 63657272 63657743 -56087155 - Tigger3b DNA MER2_type -1797 1231 754 2145 99 3 3 chr13 63657743 63658036 -56086862 + AluSg SINE Alu 3 295 -15 6292 151 22 38 chr13 63658036 63658815 -56086083 - Tigger3b DNA MER2_type -2274 754 1 40 49 0 0 chr13 63660191 63660252 -56084646 + AT_rich Low_complexity Low_complexity 1 61 0 31 26 0 0 chr13 63662259 63662297 -56082601 + AT_rich Low_complexity Low_complexity 1 38 0 1965 163 0 0 chr13 63662298 63662599 -56082299 - AluSx SINE Alu -9 303 3 816 151 50 6 chr13 63662604 63662783 -56082115 - L1MA7 LINE L1 0 6291 6105 944 241 27 75 chr13 63663428 63663802 -56081096 + MLT1A1 LTR MaLR 10 365 0 454 310 35 18 chr13 63665484 63665655 -56079243 - MIR SINE MIR -25 237 64 255 31 0 0 chr13 63667096 63667128 -56077770 + (CA)n Simple_repeat Simple_repeat 2 33 0 6144 162 48 17 chr13 63667129 63667832 -56077066 + Tigger3b DNA MER2_type 2 758 -2270 2004 116 0 3 chr13 63667832 63668142 -56076756 - AluSx SINE Alu 0 309 1 6144 162 48 17 chr13 63668142 63668617 -56076281 + Tigger3b DNA MER2_type 758 1217 -14 225 103 51 0 chr13 63669114 63669153 -56075745 + Alu SINE Alu 256 296 -6 2371 156 40 33 chr13 63669450 63670051 -56074847 + pTR5 LTR ERV1 741 1345 -1093 4354 110 14 142 chr13 63670066 63671009 -56073889 + LTR12 LTR ERV1 5 826 0 1869 245 56 90 chr13 63671161 63672418 -56072480 + L1M4 LINE L1 515 1919 -4727 * 2561 208 54 16 chr13 63672417 63673117 -56071781 + L1MC2 LINE L1 5486 6247 -97 1947 148 7 0 chr13 63673128 63673431 -56071467 - AluSq SINE Alu -8 305 1 416 243 29 0 chr13 63673447 63673550 -56071348 + L1M4 LINE L1 1908 2013 -4633 376 242 66 70 chr13 63673661 63673796 -56071102 + L1M4 LINE L1 2351 2485 -4161 2099 108 0 26 chr13 63673796 63674102 -56070796 + AluSq SINE Alu 1 298 -15 376 242 66 70 chr13 63674102 63674411 -56070487 + L1M4 LINE L1 2485 2757 -3889 600 236 179 0 chr13 63674423 63674669 -56070229 + L1M4 LINE L1 3243 3532 -3112 14588 180 42 10 chr13 63674704 63676420 -56068478 + L1M4 LINE L1 14 1849 -5716 408 20 0 0 chr13 63676420 63676469 -56068429 + (GA)n Simple_repeat Simple_repeat 1 49 0 14588 180 42 10 chr13 63676469 63677470 -56067428 + L1M4 LINE L1 1849 2817 -4748 1139 154 21 34 chr13 63677475 63677709 -56067189 - L1 LINE L1 -1833 4313 4083 565 134 0 19 chr13 63677743 63677867 -56067031 - L1PB4 LINE L1 -156 5995 5882 833 234 0 0 chr13 63677867 63678041 -56066857 + L1PB4 LINE L1 5978 6152 -4 250 286 13 0 chr13 63679438 63679515 -56065383 + L1M4 LINE L1 5048 5125 -2440 186 43 0 0 chr13 63680629 63680652 -56064246 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1017 68 0 0 chr13 63680660 63680793 -56064105 - L1PA5 LINE L1 0 6154 6022 354 302 20 20 chr13 63680955 63681104 -56063794 + L1M4 LINE L1 6389 6537 -1028 339 309 37 0 chr13 63681614 63681750 -56063148 + L1M4 LINE L1 2633 2773 -3373 1579 258 19 14 chr13 63683087 63683506 -56061392 - MLT1D LTR MaLR 0 505 85 1752 206 15 41 chr13 63683508 63683901 -56060997 - MLT1B LTR MaLR -2 388 6 488 244 0 0 chr13 63683926 63684016 -56060882 - MLT1D LTR MaLR -415 90 1 26 64 0 0 chr13 63685880 63685927 -56058971 + AT_rich Low_complexity Low_complexity 1 47 0 27 62 0 0 chr13 63686767 63686815 -56058083 + AT_rich Low_complexity Low_complexity 1 48 0 2588 198 32 38 chr13 63687206 63687834 -56057064 + L1MA10 LINE L1 5709 6332 -2 21 0 0 0 chr13 63688213 63688234 -56056664 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 63688897 63688927 -56055971 + AT_rich Low_complexity Low_complexity 1 30 0 1480 160 94 31 chr13 63688937 63689255 -56055643 + MER44D DNA MER2_type 1 608 -1 27 0 0 0 chr13 63689332 63689359 -56055539 + AT_rich Low_complexity Low_complexity 1 27 0 866 62 0 0 chr13 63689461 63689573 -56055325 - L1P LINE L1 -988 5158 5047 26 30 0 0 chr13 63689723 63689756 -56055142 + AT_rich Low_complexity Low_complexity 1 33 0 681 313 72 45 chr13 63690904 63691281 -56053617 + L2 LINE L2 2505 2891 -423 620 254 91 136 chr13 63691583 63691980 -56052918 + MLT1H1 LTR MaLR 1 379 -216 2685 149 5 5 chr13 63691981 63692409 -56052489 + MSTA LTR MaLR 1 428 0 319 309 13 40 chr13 63692634 63692786 -56052112 + L2 LINE L2 3160 3307 -6 1921 197 93 25 chr13 63692790 63693222 -56051676 + MLT2B1 LTR ERVL 1 461 -59 21 0 0 0 chr13 63693222 63693243 -56051655 + AT_rich Low_complexity Low_complexity 1 21 0 265 241 0 0 chr13 63693243 63693297 -56051601 - MLT2B1 LTR ERVL -82 438 385 194 176 20 0 chr13 63693323 63693374 -56051524 + (TA)n Simple_repeat Simple_repeat 2 53 0 261 191 0 0 chr13 63693408 63693455 -56051443 + MLT2B1 LTR ERVL 469 515 0 293 220 100 0 chr13 63693603 63693703 -56051195 - L1MA10 LINE L1 -136 6198 6089 985 365 58 10 chr13 63693752 63694253 -56050645 + L2 LINE L2 1048 1572 -1742 180 0 0 0 chr13 63694256 63694276 -56050622 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 694 169 24 0 chr13 63694311 63694435 -56050463 - FRAM SINE Alu -3 173 47 14172 212 46 23 chr13 63694436 63694798 -56050100 - L1PB1 LINE L1 0 6867 6515 264 59 0 0 chr13 63694798 63694832 -56050066 + (TA)n Simple_repeat Simple_repeat 2 35 0 14172 212 46 23 chr13 63694832 63698617 -56046281 - L1PB1 LINE L1 -352 6515 2314 1657 198 3 0 chr13 63698617 63698920 -56045978 + AluSx SINE Alu 4 307 -5 14172 212 46 23 chr13 63698920 63701284 -56043614 - L1PB1 LINE L1 -4553 2314 6 2767 120 65 7 chr13 63701378 63701861 -56043037 + LTR12 LTR ERV1 1 582 -132 1786 171 0 24 chr13 63702156 63702454 -56042444 + AluJb SINE Alu 3 293 -19 226 49 24 24 chr13 63702454 63702495 -56042403 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 3919 204 16 47 chr13 63702750 63702831 -56042067 + L1MB3 LINE L1 5260 5342 -841 1624 199 7 7 chr13 63702831 63703128 -56041770 + AluJb SINE Alu 1 297 -15 3919 204 16 47 chr13 63703128 63703999 -56040899 + L1MB3 LINE L1 5342 6182 -1 714 181 27 7 chr13 63705127 63705276 -56039622 + L1MA5 LINE L1 5798 5949 -351 3293 225 81 71 chr13 63705280 63706393 -56038505 - LTR28 LTR ERV1 -1 1737 1 1636 149 70 9 chr13 63706395 63706724 -56038174 + L1MA5 LINE L1 5948 6296 -4 1284 199 64 0 chr13 63706735 63707032 -56037866 + L1MA8 LINE L1 5975 6290 -1 1390 131 85 3 chr13 63707147 63707430 -56037468 + L1MA8 LINE L1 5984 6289 -2 21 0 0 0 chr13 63708284 63708305 -56036593 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 63708347 63708384 -56036514 + AT_rich Low_complexity Low_complexity 1 37 0 316 338 83 8 chr13 63708428 63708561 -56036337 - MIR SINE MIR -73 189 47 351 96 0 0 chr13 63709213 63709265 -56035633 + (TA)n Simple_repeat Simple_repeat 2 53 0 230 139 0 23 chr13 63709459 63709502 -56035396 - MER5B DNA MER1_type -134 44 3 25 0 0 0 chr13 63710687 63710712 -56034186 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 63711069 63711097 -56033801 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 63711178 63711201 -56033697 + AT_rich Low_complexity Low_complexity 1 23 0 246 174 0 0 chr13 63711712 63711758 -56033140 + (CTA)n Simple_repeat Simple_repeat 1 46 0 2275 240 36 52 chr13 63713055 63713863 -56031035 + L1 LINE L1 3317 4111 -2035 1188 195 5 23 chr13 63713863 63714084 -56030814 - AluJb SINE Alu -95 217 1 1051 239 42 60 chr13 63714246 63714581 -56030317 + MLT1D LTR MaLR 1 329 -176 845 233 131 0 chr13 63714618 63714824 -56030074 + MLT1D LTR MaLR 273 505 0 352 210 30 0 chr13 63715041 63715141 -56029757 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 1246 183 149 0 chr13 63715141 63715403 -56029495 - AluSx SINE Alu -1 301 1 1026 206 43 9 chr13 63715633 63715866 -56029032 - L1MB1 LINE L1 0 6168 5928 * 1138 226 63 28 chr13 63715861 63716180 -56028718 - L1MB1 LINE L1 -22 6146 5817 747 145 22 22 chr13 63716182 63716361 -56028537 + CT-rich Low_complexity Low_complexity 2 180 0 1579 206 6 3 chr13 63716364 63716762 -56028136 - AluJo SINE Alu 0 399 1 550 274 32 0 chr13 63716805 63716962 -56027936 - L1MB1 LINE L1 -1029 5117 4956 2415 57 0 3 chr13 63716964 63717261 -56027637 + AluY SINE Alu 1 296 -15 1136 75 0 0 chr13 63717318 63717465 -56027433 + AluY SINE Alu 156 302 -9 3516 224 35 11 chr13 63717465 63718344 -56026554 - L1MB1 LINE L1 -1178 4968 4069 236 277 20 20 chr13 63718657 63718758 -56026140 + MLT1I LTR MaLR 309 409 0 22 35 0 0 chr13 63718932 63718961 -56025937 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr13 63719429 63719459 -56025439 + (CA)n Simple_repeat Simple_repeat 2 31 0 788 238 34 45 chr13 63719903 63720168 -56024730 - L1MB7 LINE L1 -13 6171 5910 26 64 0 0 chr13 63721552 63721599 -56023299 + AT_rich Low_complexity Low_complexity 1 47 0 180 0 0 0 chr13 63721675 63721695 -56023203 + (TA)n Simple_repeat Simple_repeat 1 20 0 32 67 0 0 chr13 63721955 63722015 -56022883 + AT_rich Low_complexity Low_complexity 1 60 0 212 0 0 35 chr13 63722618 63722647 -56022251 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1251 211 7 33 chr13 63722650 63722925 -56021973 - AluJo SINE Alu -30 282 15 24 0 0 0 chr13 63722938 63722962 -56021936 + AT_rich Low_complexity Low_complexity 1 24 0 181 326 12 47 chr13 63723351 63723437 -56021461 - MIR SINE MIR -46 216 134 24 0 0 0 chr13 63723706 63723730 -56021168 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 63723898 63723921 -56020977 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 393 329 83 17 chr13 63723940 63724180 -56020718 - L2 LINE L2 -56 3257 3002 317 282 36 9 chr13 63724618 63724728 -56020170 - L2 LINE L2 -939 2375 2263 229 269 39 26 chr13 63725543 63725621 -56019277 - MLT1J2 LTR MaLR -305 145 67 26 0 0 0 chr13 63726523 63726549 -56018349 + AT_rich Low_complexity Low_complexity 1 26 0 329 272 25 0 chr13 63726860 63726941 -56017957 - LTR33 LTR ERVL -438 83 1 2040 109 0 17 chr13 63726992 63727286 -56017612 + AluSg SINE Alu 1 289 -21 374 257 19 9 chr13 63727804 63727909 -56016989 - MLT1B LTR MaLR 0 390 285 4146 173 58 5 chr13 63728179 63728547 -56016351 - Tigger1 DNA MER2_type 0 2418 2071 706 155 16 0 chr13 63728547 63728676 -56016222 - L1MA3 LINE L1 -12 6293 6163 4146 173 58 5 chr13 63728676 63729100 -56015798 - Tigger1 DNA MER2_type -347 2071 1584 1253 76 0 12 chr13 63729100 63729271 -56015627 - AluY SINE Alu -14 297 129 8113 181 32 3 chr13 63729277 63730818 -56014080 - Tigger1 DNA MER2_type -832 1586 1 211 391 90 47 chr13 63731135 63731478 -56013420 - L2 LINE L2 0 3272 2915 333 405 10 5 chr13 63731585 63731780 -56013118 - L2 LINE L2 -538 2776 2581 281 392 44 10 chr13 63731830 63732034 -56012864 + MIR SINE MIR 2 212 -50 191 250 0 0 chr13 63732051 63732091 -56012807 + MIR SINE MIR 173 212 -50 32 81 0 0 chr13 63732798 63732872 -56012026 + AT_rich Low_complexity Low_complexity 1 74 0 218 254 101 80 chr13 63733026 63733164 -56011734 - L2 LINE L2 -6 3307 3167 1381 281 87 53 chr13 63733198 63733564 -56011334 - L2 LINE L2 -1101 2213 1861 1821 120 26 4 chr13 63733564 63733831 -56011067 + AluSx SINE Alu 1 273 -39 1381 281 87 53 chr13 63733831 63734162 -56010736 - L2 LINE L2 -1453 1861 1492 207 301 96 44 chr13 63734284 63734420 -56010478 + L3b LINE CR1 1297 1439 -144 21 0 0 0 chr13 63734678 63734699 -56010199 + AT_rich Low_complexity Low_complexity 1 21 0 24 91 0 0 chr13 63735892 63735958 -56008940 + AT_rich Low_complexity Low_complexity 1 66 0 2329 162 49 2 chr13 63736168 63736576 -56008322 + MER57B LTR ERV1 2 428 -6 21 0 0 0 chr13 63736604 63736625 -56008273 + AT_rich Low_complexity Low_complexity 1 21 0 266 94 19 38 chr13 63736627 63736680 -56008218 - L1MA6 LINE L1 0 6300 6249 766 241 11 7 chr13 63736879 63737075 -56007823 - L1MB8 LINE L1 -2 6176 5977 611 241 36 109 chr13 63737306 63737663 -56007235 - L1ME1 LINE L1 -5 6161 5831 990 317 36 36 chr13 63737684 63738354 -56006544 + L1PA15-16 LINE L1 2 647 -6203 336 330 32 68 chr13 63738520 63738799 -56006099 + L1PA15-16 LINE L1 1191 1459 -5390 1163 239 20 75 chr13 63738949 63739313 -56005585 + L1PA15-16 LINE L1 1432 1768 -5082 2170 125 0 3 chr13 63739313 63739616 -56005282 + AluSx SINE Alu 1 302 -10 1163 239 20 75 chr13 63739616 63739768 -56005130 + L1PA15-16 LINE L1 1768 1927 -4923 4434 122 17 17 chr13 63739768 63739816 -56005082 - MER61-int LTR ERV1 -2138 3079 3032 1995 144 39 30 chr13 63739816 63740177 -56004721 + THE1B LTR MaLR 1 364 0 4434 122 17 17 chr13 63740177 63740844 -56004054 - MER61-int LTR ERV1 -2184 3033 2364 4549 52 2 5 chr13 63740884 63741458 -56003440 - L1PA5 LINE L1 -7 6147 5576 30 0 0 0 chr13 63743591 63743621 -56001277 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 63744039 63744068 -56000830 + AT_rich Low_complexity Low_complexity 1 29 0 641 236 0 0 chr13 63744119 63744263 -56000635 + L1MA10 LINE L1 6180 6323 -11 2111 133 0 3 chr13 63745490 63745799 -55999099 + AluSg SINE Alu 1 308 -2 2146 242 144 6 chr13 63746384 63747173 -55997725 + L1M4 LINE L1 4267 5164 -982 22 56 0 0 chr13 63747633 63747669 -55997229 + AT_rich Low_complexity Low_complexity 1 36 0 2206 105 102 3 chr13 63747881 63748224 -55996674 + MER51B LTR ERV1 1 377 0 920 185 11 0 chr13 63748237 63748426 -55996472 - L1MA6 LINE L1 0 6300 6110 22 70 0 0 chr13 63748433 63748476 -55996422 + AT_rich Low_complexity Low_complexity 1 43 0 2073 148 0 0 chr13 63748871 63749175 -55995723 - AluSx SINE Alu -8 304 1 230 410 42 0 chr13 63749188 63749283 -55995615 + L2 LINE L2 3197 3295 -18 266 235 0 82 chr13 63749443 63749528 -55995370 + L2 LINE L2 3193 3270 -2 2072 123 0 19 chr13 63749774 63750082 -55994816 + AluY SINE Alu 2 303 -8 4591 182 27 2 chr13 63751414 63752315 -55992583 - L1MA4 LINE L1 -63 6237 5315 1876 162 34 8 chr13 63752342 63752700 -55992198 - L1PB4 LINE L1 -3 6153 5787 226 112 34 56 chr13 63752703 63752792 -55992106 + (TA)n Simple_repeat Simple_repeat 2 88 0 1055 124 75 0 chr13 63752820 63753006 -55991892 - L1PB4 LINE L1 -364 5792 5593 * 4417 187 15 5 chr13 63752995 63753927 -55990971 - L1MA4 LINE L1 -807 5339 4399 2486 181 30 72 chr13 63753971 63754252 -55990646 - L1MA4 LINE L1 -2511 3635 3344 207 0 0 0 chr13 63754252 63754275 -55990623 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2486 181 30 72 chr13 63754275 63754307 -55990591 - L1MA4 LINE L1 -2802 3344 3312 1897 150 23 7 chr13 63754307 63754613 -55990285 - AluSx SINE Alu -1 311 1 2486 181 30 72 chr13 63754613 63754995 -55989903 - L1MA4 LINE L1 -2834 3312 2968 1602 160 3 22 chr13 63754995 63755308 -55989590 - AluY SINE Alu -4 307 1 2595 48 0 13 chr13 63755691 63756006 -55988892 - AluY SINE Alu 0 311 1 1304 278 62 6 chr13 63756006 63756661 -55988237 - L1M4 LINE L1 -3170 2976 2275 1978 78 7 25 chr13 63756723 63757005 -55987893 + AluY SINE Alu 35 311 0 32 81 0 0 chr13 63757033 63757107 -55987791 + AT_rich Low_complexity Low_complexity 1 74 0 1704 198 97 56 chr13 63757165 63757649 -55987249 - MER67D LTR ERV1 -10 504 1 2177 116 3 10 chr13 63757888 63758199 -55986699 - AluSc SINE Alu 0 309 1 22 35 0 0 chr13 63759739 63759768 -55985130 + AT_rich Low_complexity Low_complexity 1 29 0 746 174 132 6 chr13 63759853 63760020 -55984878 - MER5A DNA MER1_type 0 189 2 28 86 0 0 chr13 63761364 63761434 -55983464 + AT_rich Low_complexity Low_complexity 1 70 0 25 51 0 0 chr13 63761455 63761494 -55983404 + AT_rich Low_complexity Low_complexity 1 39 0 254 86 0 0 chr13 63761580 63761615 -55983283 - MLT2A1 LTR ERVL 0 453 419 431 228 5 11 chr13 63761615 63762073 -55982825 + (TA)n Simple_repeat Simple_repeat 1 454 0 2628 111 25 10 chr13 63762084 63762482 -55982416 - MLT2A1 LTR ERVL -40 404 1 5725 83 8 0 chr13 63762482 63763244 -55981654 - HERVL-A1 LTR ERVL 0 5654 4887 * 14469 87 18 4 chr13 63763231 63765192 -55979706 - HERVL-A1 LTR ERVL -3665 1989 1 2847 103 42 7 chr13 63765192 63765234 -55979664 - MLT2A1 LTR ERVL 0 444 405 390 21 0 0 chr13 63765234 63765281 -55979617 + (CA)n Simple_repeat Simple_repeat 2 48 0 2847 103 42 7 chr13 63765281 63765667 -55979231 - MLT2A1 LTR ERVL -39 405 1 2533 227 65 17 chr13 63765748 63766440 -55978458 - MER50 LTR ERV1 0 734 10 537 162 8 124 chr13 63766485 63766592 -55978306 + MLT1A1 LTR MaLR 55 173 -192 2243 106 0 10 chr13 63766592 63766895 -55978003 + AluSp SINE Alu 5 304 -9 537 162 8 124 chr13 63766895 63766961 -55977937 + MLT1A1 LTR MaLR 173 245 -120 1898 145 42 0 chr13 63766961 63767244 -55977654 - AluSx SINE Alu -17 295 1 537 162 8 124 chr13 63767244 63767312 -55977586 + MLT1A1 LTR MaLR 245 365 0 2967 159 68 41 chr13 63767445 63767918 -55976980 + LTR29 LTR ERV1 3 497 -125 1506 159 48 58 chr13 63767918 63768295 -55976603 + MER83C LTR ERV1 1 373 0 2967 159 68 41 chr13 63768295 63768425 -55976473 + LTR29 LTR ERV1 497 622 0 4868 159 33 25 chr13 63768540 63769405 -55975493 + Tigger1 DNA MER2_type 1 872 -1546 2963 164 21 16 chr13 63769405 63769965 -55974933 + MER50 LTR ERV1 1 563 -171 24 96 0 0 chr13 63770283 63770356 -55974542 + AT_rich Low_complexity Low_complexity 1 73 0 1858 214 80 91 chr13 63770925 63771660 -55973238 + LTR8A LTR ERV1 1 727 0 4197 46 3 29 chr13 63772144 63773096 -55971802 - L1P2 LINE L1 -379 5775 4848 * 5527 70 6 0 chr13 63773065 63773795 -55971103 + L1P2 LINE L1 4129 4862 -1284 379 261 169 10 chr13 63773797 63773992 -55970906 + MER5C DNA MER1_type 99 324 0 406 236 38 0 chr13 63774612 63774718 -55970180 - MLT1G LTR MaLR 0 590 481 662 184 49 110 chr13 63775415 63775578 -55969320 + MER5A DNA MER1_type 24 176 -13 31 26 0 0 chr13 63777538 63777576 -55967322 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 63778170 63778199 -55966699 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr13 63778241 63778276 -55966622 + AT_rich Low_complexity Low_complexity 1 35 0 1478 190 0 67 chr13 63779700 63780027 -55964871 - AluJb SINE Alu -7 305 1 308 304 121 45 chr13 63780203 63780427 -55964471 - MIR SINE MIR -2 260 20 26 50 0 0 chr13 63781749 63781789 -55963109 + AT_rich Low_complexity Low_complexity 1 40 0 474 185 0 56 chr13 63782179 63782287 -55962611 - MER58B DNA MER1_type -11 330 229 248 333 13 0 chr13 63782653 63782728 -55962170 - L2 LINE L2 -9 3263 3188 1971 254 26 41 chr13 63782852 63783326 -55961572 + MER77 LTR ERV1 5 470 -135 2193 102 14 0 chr13 63783326 63783620 -55961278 - AluSg SINE Alu -12 298 1 1971 254 26 41 chr13 63783620 63783755 -55961143 + MER77 LTR ERV1 470 605 0 938 204 32 5 chr13 63783773 63783959 -55960939 + MSTB LTR MaLR 236 426 0 821 232 28 0 chr13 63784129 63784306 -55960592 + MER58A DNA MER1_type 30 211 -13 448 169 12 12 chr13 63784368 63784451 -55960447 + MSTB LTR MaLR 1 83 -343 1884 154 27 41 chr13 63784451 63784820 -55960078 + THE1B LTR MaLR 1 364 0 8097 115 2 34 chr13 63784820 63786056 -55958842 + THE1B-int LTR MaLR 1 1197 -383 833 245 159 45 chr13 63786232 63786546 -55958352 + MLT1A1 LTR MaLR 16 365 0 188 345 50 17 chr13 63786578 63786697 -55958201 - L2 LINE L2 -898 2416 2294 406 368 63 35 chr13 63786697 63786987 -55957911 - L2 LINE L2 -1183 2131 1851 1676 151 73 28 chr13 63786987 63787344 -55957554 + THE1C LTR MaLR 3 375 0 406 368 63 35 chr13 63787344 63787653 -55957245 - L2 LINE L2 -1463 1851 1515 407 92 15 0 chr13 63787913 63787978 -55956920 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 1835 258 139 7 chr13 63787978 63788559 -55956339 + MER76 LTR ERV 30 687 -1 1911 142 0 3 chr13 63789446 63789734 -55955164 - AluSq SINE Alu -11 302 16 647 261 76 24 chr13 63789753 63790002 -55954896 + Charlie4a DNA MER1_type 247 508 0 278 333 54 0 chr13 63790242 63790371 -55954527 + MIR SINE MIR 127 262 0 22 56 0 0 chr13 63791091 63791127 -55953771 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 63791260 63791281 -55953617 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 63791438 63791474 -55953424 + AT_rich Low_complexity Low_complexity 1 36 0 299 181 14 0 chr13 63791707 63791779 -55953119 + GA-rich Low_complexity Low_complexity 4 76 0 1129 119 10 0 chr13 63792577 63792770 -55952128 + L1P4 LINE L1 5254 5448 -718 3415 202 11 2 chr13 63792770 63793384 -55951514 - MER52A LTR ERV1 0 1755 1136 322 261 0 0 chr13 63793392 63793484 -55951414 + L1MC/D LINE L1 4412 4503 -1643 399 162 0 0 chr13 63793525 63793593 -55951305 - L1MA9 LINE L1 -38 6274 6207 350 302 67 24 chr13 63794018 63794359 -55950539 + L1MC/D LINE L1 4490 4845 -1301 235 288 124 20 chr13 63794691 63794941 -55949957 + L1MC/D LINE L1 5256 5531 -2511 219 188 0 0 chr13 63795589 63795637 -55949261 + CT-rich Low_complexity Low_complexity 2 49 0 376 317 95 27 chr13 63795648 63795910 -55948988 - L2 LINE L2 -20 3293 3014 1613 203 35 22 chr13 63796483 63796852 -55948046 - THE1C LTR MaLR -1 374 1 2199 221 34 11 chr13 63797333 63797494 -55947404 - L1MB8 LINE L1 0 6178 6018 1057 268 112 12 chr13 63797494 63798327 -55946571 - L1MC4 LINE L1 -772 5374 5088 1954 85 20 54 chr13 63799130 63799425 -55945473 + AluY SINE Alu 1 285 -26 222 156 22 0 chr13 63799425 63799470 -55945428 + (TA)n Simple_repeat Simple_repeat 1 46 0 222 208 42 0 chr13 63799842 63799914 -55944984 + (TA)n Simple_repeat Simple_repeat 2 76 0 1013 124 17 28 chr13 63800256 63800434 -55944464 - L1MA8 LINE L1 -130 6161 5986 2654 183 10 2 chr13 63800454 63800945 -55943953 - L1MC1 LINE L1 -5 6328 5834 1269 293 25 24 chr13 63800967 63801418 -55943480 + LTR40a LTR ERVL 69 519 0 2206 258 62 30 chr13 63801484 63802299 -55942599 - L1ME2 LINE L1 -11 6153 5366 1967 140 0 3 chr13 63802299 63802584 -55942314 + AluSq SINE Alu 1 284 -29 294 73 0 0 chr13 63802584 63802625 -55942273 + (CA)n Simple_repeat Simple_repeat 2 42 0 2206 258 62 30 chr13 63802625 63802822 -55942076 - L1ME2 LINE L1 -797 5367 5110 2252 94 0 13 chr13 63804741 63805040 -55939858 + AluY SINE Alu 1 295 -16 212 125 42 0 chr13 63805165 63805213 -55939685 + (TA)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr13 63805799 63805827 -55939071 + AT_rich Low_complexity Low_complexity 1 28 0 282 273 45 11 chr13 63805889 63805977 -55938921 + L2 LINE L2 3182 3272 0 4151 189 38 61 chr13 63806970 63808063 -55936835 + MER11C LTR ERVK 1 1067 -4 443 308 70 24 chr13 63808247 63808527 -55936371 + L1M4 LINE L1 5093 5389 -757 313 234 97 26 chr13 63808559 63808713 -55936185 + L1MEc LINE L1 2198 2362 -4034 315 194 0 189 chr13 63808762 63808989 -55935909 - L1M4 LINE L1 -2848 3298 3115 28 61 0 0 chr13 63809223 63809272 -55935626 + AT_rich Low_complexity Low_complexity 1 49 0 1941 167 21 45 chr13 63809604 63809847 -55935051 - MER50 LTR ERV1 -366 368 135 2039 103 0 21 chr13 63809847 63810170 -55934728 - AluY SINE Alu 0 317 1 1941 167 21 45 chr13 63810170 63810302 -55934596 - MER50 LTR ERV1 -599 135 1 722 158 0 39 chr13 63810655 63810782 -55934116 - FLAM_A SINE Alu -11 122 1 359 349 128 0 chr13 63811346 63811541 -55933357 + MIR SINE MIR 39 258 -4 1635 186 0 47 chr13 63811654 63811972 -55932926 - AluJb SINE Alu -3 309 7 21 36 0 0 chr13 63812103 63812131 -55932767 + AT_rich Low_complexity Low_complexity 1 28 0 326 339 35 23 chr13 63812236 63812410 -55932488 + MIR SINE MIR 22 197 -65 1590 324 39 4 chr13 63812430 63812973 -55931925 + MLT1E LTR MaLR 24 585 -8 23 54 0 0 chr13 63814311 63814348 -55930550 + AT_rich Low_complexity Low_complexity 1 37 0 2076 93 0 84 chr13 63814439 63814771 -55930127 + AluSp SINE Alu 1 304 -9 311 333 124 16 chr13 63814938 63815124 -55929774 + MIR SINE MIR 54 259 -3 332 348 12 50 chr13 63815431 63815592 -55929306 + LTR40a LTR ERVL 197 351 -168 27 73 0 0 chr13 63815944 63815999 -55928899 + AT_rich Low_complexity Low_complexity 1 55 0 260 311 126 7 chr13 63816194 63816329 -55928569 - MIR SINE MIR -110 152 2 222 299 103 0 chr13 63816624 63816711 -55928187 + MER5C DNA MER1_type 6 101 -223 6335 53 5 0 chr13 63816748 63817535 -55927363 - L1PA5 LINE L1 -6 6148 5358 2595 165 43 15 chr13 63817641 63818179 -55926719 + L1MA4 LINE L1 5746 6298 -2 1558 76 0 102 chr13 63819151 63819415 -55925483 - AluY SINE Alu -20 291 55 5066 113 48 6 chr13 63819722 63820613 -55924285 - L1PA16 LINE L1 -7 6159 5232 216 0 0 0 chr13 63821047 63821071 -55923827 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2140 101 3 16 chr13 63821075 63821382 -55923516 - AluY SINE Alu -8 303 1 261 0 0 0 chr13 63821498 63821527 -55923371 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 1689 180 70 12 chr13 63823024 63823369 -55921529 - MLT1A1 LTR MaLR 0 365 1 1853 305 73 2 chr13 63826741 63827360 -55917538 + L1M3a LINE L1 1546 2208 -5278 2096 282 63 13 chr13 63827363 63828080 -55916818 + L1M2 LINE L1 1360 2112 -4976 989 89 0 0 chr13 63828080 63828203 -55916695 + AluSq/x SINE Alu 1 123 -190 241 65 0 0 chr13 63828203 63828288 -55916610 + AluSp/q SINE Alu 254 338 0 1122 263 17 41 chr13 63828292 63828766 -55916132 + L1M3a LINE L1 2444 2923 -4573 839 141 0 0 chr13 63828778 63828906 -55915992 + AluSg/x SINE Alu 169 296 -16 1218 278 57 43 chr13 63828913 63829307 -55915591 + L1M2 LINE L1 2195 2582 -4585 1978 131 7 13 chr13 63829307 63829613 -55915285 + AluSc SINE Alu 1 304 -5 1218 278 57 43 chr13 63829613 63830397 -55914501 + L1M2 LINE L1 2582 3380 -3787 1478 236 13 35 chr13 63830397 63830770 -55914128 - MLT1A1 LTR MaLR 0 365 1 1218 278 57 43 chr13 63830770 63830818 -55914080 + L1M2 LINE L1 3380 3426 -3741 3979 206 13 37 chr13 63830838 63831506 -55913392 + L1M2 LINE L1 5348 6031 -1302 1521 187 27 3 chr13 63831506 63831800 -55913098 + AluJb SINE Alu 3 303 -9 3979 206 13 37 chr13 63831800 63832093 -55912805 + L1M2 LINE L1 6031 6330 -1003 2218 102 0 0 chr13 63832093 63832399 -55912499 + AluSg SINE Alu 2 307 0 3979 206 13 37 chr13 63832399 63832878 -55912020 + L1M2 LINE L1 6330 6756 -577 660 115 0 0 chr13 63832898 63832994 -55911904 + L1MA9 LINE L1 6170 6265 -47 918 137 0 16 chr13 63833069 63833251 -55911647 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 222 271 0 0 chr13 63833271 63833356 -55911542 + T-rich Low_complexity Low_complexity 96 180 0 24 32 0 0 chr13 63833634 63833665 -55911233 + AT_rich Low_complexity Low_complexity 1 31 0 2318 99 0 0 chr13 63833973 63834277 -55910621 - AluY SINE Alu -7 304 1 1232 160 68 151 chr13 63834300 63834525 -55910373 - MLT1B LTR MaLR -1 389 214 3259 215 19 13 chr13 63834525 63835223 -55909675 + MER44D DNA MER2_type 1 702 -3 1232 160 68 151 chr13 63835223 63835421 -55909477 - MLT1B LTR MaLR -176 214 1 254 282 178 25 chr13 63837462 63837625 -55907273 + MIR SINE MIR 70 257 -5 220 274 65 73 chr13 63838324 63838448 -55906450 + MIR SINE MIR 122 244 -18 180 0 0 0 chr13 63838793 63838813 -55906085 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2014 108 32 0 chr13 63838818 63839095 -55905803 - AluSg SINE Alu -24 286 1 647 325 78 17 chr13 63839375 63839826 -55905072 + L2 LINE L2 2599 3073 -240 1747 175 0 3 chr13 63840116 63840401 -55904497 + AluJb SINE Alu 16 299 -13 227 226 19 0 chr13 63840401 63840454 -55904444 - LTR16A1 LTR ERVL -10 447 394 2147 78 0 63 chr13 63840596 63840928 -55903970 - AluY SINE Alu 0 311 1 388 191 71 0 chr13 63840936 63841020 -55903878 - MSTC LTR MaLR -338 90 1 26 30 0 0 chr13 63841190 63841223 -55903675 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 63841711 63841740 -55903158 + AT_rich Low_complexity Low_complexity 1 29 0 189 121 0 0 chr13 63842068 63842101 -55902797 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 68 0 0 chr13 63842152 63842196 -55902702 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 63842574 63842595 -55902303 + AT_rich Low_complexity Low_complexity 1 21 0 258 208 0 0 chr13 63842970 63843023 -55901875 + MIR SINE MIR 166 218 -44 1268 276 26 50 chr13 63844236 63844692 -55900206 - LTR16A1 LTR ERVL -9 448 4 275 350 0 8 chr13 63844813 63844933 -55899965 - L1MC/D LINE L1 -2132 5676 5558 337 301 114 38 chr13 63844937 63845173 -55899725 - L1MC/D LINE L1 -2294 5514 5261 21 0 0 0 chr13 63845340 63845361 -55899537 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr13 63845641 63845694 -55899204 + AT_rich Low_complexity Low_complexity 1 53 0 342 0 0 0 chr13 63846044 63846082 -55898816 + (TA)n Simple_repeat Simple_repeat 1 38 0 2792 84 72 2 chr13 63847124 63847500 -55897398 + MLT2A1 LTR ERVL 1 410 -34 225 0 0 0 chr13 63847500 63847525 -55897373 + (TA)n Simple_repeat Simple_repeat 1 25 0 2792 84 72 2 chr13 63847525 63847563 -55897335 + MLT2A1 LTR ERVL 410 444 0 19565 82 8 0 chr13 63847578 63850150 -55894748 + HERVL-A1 LTR ERVL 3064 5654 0 2814 94 54 14 chr13 63850150 63850536 -55894362 + MLT2A1 LTR ERVL 1 407 -37 249 33 0 0 chr13 63850536 63850566 -55894332 + (TA)n Simple_repeat Simple_repeat 2 31 0 2814 94 54 14 chr13 63850566 63850604 -55894294 + MLT2A1 LTR ERVL 407 442 -2 21 0 0 0 chr13 63851071 63851092 -55893806 + AT_rich Low_complexity Low_complexity 1 21 0 1813 150 21 7 chr13 63851982 63852268 -55892630 - AluSx SINE Alu -18 294 5 30 83 0 0 chr13 63852340 63852412 -55892486 + AT_rich Low_complexity Low_complexity 1 72 0 25 0 0 0 chr13 63852463 63852488 -55892410 + AT_rich Low_complexity Low_complexity 1 25 0 478 323 77 13 chr13 63852593 63852828 -55892070 - MIR SINE MIR 0 262 13 1001 172 6 0 chr13 63853040 63853203 -55891695 + FRAM SINE Alu 1 160 -16 330 45 0 0 chr13 63853207 63853251 -55891647 + (TAAAA)n Simple_repeat Simple_repeat 5 48 0 27 0 0 0 chr13 63853722 63853749 -55891149 + AT_rich Low_complexity Low_complexity 1 27 0 1371 265 48 6 chr13 63853764 63854115 -55890783 + MER82 DNA MER2_type 288 653 0 22 0 0 0 chr13 63854123 63854145 -55890753 + AT_rich Low_complexity Low_complexity 1 22 0 1467 279 64 23 chr13 63854904 63855680 -55889218 + L1ME3 LINE L1 5208 6012 -150 308 81 54 14 chr13 63855782 63855856 -55889042 + T-rich Low_complexity Low_complexity 4 80 0 1545 203 0 24 chr13 63856947 63857242 -55887656 + AluJo SINE Alu 1 288 -24 1902 153 82 15 chr13 63857791 63858132 -55886766 + THE1B LTR MaLR 1 364 0 192 295 97 29 chr13 63858432 63858546 -55886352 - MIR3 SINE MIR -119 89 2 1650 250 35 57 chr13 63858604 63859253 -55885645 - L1ME2 LINE L1 -1 6163 5529 2013 70 66 15 chr13 63859486 63859759 -55885139 + AluSc SINE Alu 1 287 -22 3185 262 65 29 chr13 63860054 63861572 -55883326 + L1M4b LINE L1 656 2212 -4747 1929 129 3 7 chr13 63861668 63861954 -55882944 + AluSg SINE Alu 1 285 -25 25 0 0 0 chr13 63861954 63861979 -55882919 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr13 63862065 63862109 -55882789 + AT_rich Low_complexity Low_complexity 1 44 0 264 278 15 15 chr13 63862407 63862540 -55882358 + L1M4b LINE L1 2858 2990 -3967 6284 98 10 8 chr13 63862545 63864084 -55880814 - L1PA10 LINE L1 0 6168 4628 1663 259 50 23 chr13 63864134 63864789 -55880109 + L1M4b LINE L1 3032 3673 -3284 21 57 0 0 chr13 63865019 63865054 -55879844 + AT_rich Low_complexity Low_complexity 1 35 0 291 344 43 21 chr13 63865150 63865336 -55879562 - MLT1J2 LTR MaLR -228 222 33 2197 164 30 73 chr13 63866357 63866850 -55878048 - MER70A LTR ERVL 0 472 1 1055 280 24 10 chr13 63867865 63868154 -55876744 + MER119 DNA MER1_type 4 296 -287 6158 61 3 4 chr13 63868209 63868983 -55875915 - LTR17 LTR ERV1 -7 773 1 878 227 48 9 chr13 63868985 63869214 -55875684 + MER119 DNA MER1_type 345 582 -1 22 0 0 0 chr13 63869609 63869631 -55875267 + AT_rich Low_complexity Low_complexity 1 22 0 506 208 8 46 chr13 63870298 63870428 -55874470 + MLT2C1 LTR ERVL 18 142 -255 198 268 71 0 chr13 63870867 63870923 -55873975 - L3 LINE CR1 -990 587 528 192 125 0 0 chr13 63871018 63871050 -55873848 + (T)n Simple_repeat Simple_repeat 1 32 0 452 239 0 0 chr13 63871403 63871495 -55873403 - MLT1B LTR MaLR 0 390 299 3318 94 12 2 chr13 63871500 63871987 -55872911 - L1PA13 LINE L1 -5 6158 5667 2237 69 23 3 chr13 63871988 63872291 -55872607 + L1PA13 LINE L1 5369 5677 -486 874 246 95 21 chr13 63872291 63872576 -55872322 - MLT1B LTR MaLR -84 306 1 24 32 0 0 chr13 63873953 63873984 -55870914 + AT_rich Low_complexity Low_complexity 1 31 0 1850 207 77 164 chr13 63874286 63875487 -55869411 + MER52A LTR ERV1 660 1755 0 239 343 94 34 chr13 63875687 63875952 -55868946 - L2 LINE L2 -571 2743 2463 860 209 41 85 chr13 63876010 63876350 -55868548 - LTR37A LTR ERV1 -21 405 81 279 296 212 38 chr13 63876497 63876761 -55868137 - L2 LINE L2 -948 2366 2057 211 316 118 22 chr13 63876986 63877122 -55867776 - L2 LINE L2 -2925 389 241 29 28 0 0 chr13 63878620 63878656 -55866242 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr13 63878710 63878740 -55866158 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr13 63879008 63879035 -55865863 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 63879217 63879240 -55865658 + AT_rich Low_complexity Low_complexity 1 23 0 394 355 41 9 chr13 63879349 63879569 -55865329 - L2 LINE L2 -1215 2099 1873 733 273 101 14 chr13 63879720 63880068 -55864830 + Charlie4a DNA MER1_type 7 384 -124 1292 179 4 0 chr13 63880104 63880339 -55864559 - Tigger2 DNA MER2_type -32 2686 2451 4284 146 25 3 chr13 63880411 63881128 -55863770 - Tigger2 DNA MER2_type -1985 733 1 994 199 73 54 chr13 63881170 63881487 -55863411 - L1MD3 LINE L1 -81 7914 7592 734 254 82 16 chr13 63881485 63881741 -55863157 - L1MC3 LINE L1 -944 6841 6569 * 446 256 66 7 chr13 63881777 63881914 -55862984 + Charlie4a DNA MER1_type 364 508 0 208 354 0 35 chr13 63881921 63882065 -55862833 - L2 LINE L2 -1635 1679 1541 293 359 103 42 chr13 63882143 63882697 -55862201 - L2 LINE L2 -1911 1403 816 2813 208 29 3 chr13 63882988 63883637 -55861261 + L1MA8 LINE L1 4488 5153 -993 2007 169 48 77 chr13 63883773 63884316 -55860582 + L1MA8 LINE L1 5758 6284 -7 217 167 26 51 chr13 63884715 63884793 -55860105 + (TTATA)n Simple_repeat Simple_repeat 4 79 0 423 0 0 0 chr13 63884929 63884976 -55859922 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 33 43 0 0 chr13 63885954 63886001 -55858897 + AT_rich Low_complexity Low_complexity 1 47 0 33 25 0 0 chr13 63886068 63886108 -55858790 + AT_rich Low_complexity Low_complexity 1 40 0 1576 187 3 30 chr13 63886129 63886429 -55858469 + AluJb SINE Alu 12 303 -9 628 306 146 9 chr13 63886725 63887061 -55857837 + L2 LINE L2 1282 1663 -1651 484 310 33 22 chr13 63887132 63887316 -55857582 + L2 LINE L2 2821 3006 -307 28 61 0 0 chr13 63888057 63888106 -55856792 + AT_rich Low_complexity Low_complexity 1 49 0 4436 264 43 56 chr13 63888186 63889577 -55855321 + L1M4b LINE L1 10 1383 -5476 372 43 0 0 chr13 63889577 63889623 -55855275 + (CA)n Simple_repeat Simple_repeat 1 46 0 4436 264 43 56 chr13 63889623 63889664 -55855234 + L1M4b LINE L1 1383 1423 -5436 21 36 0 0 chr13 63890380 63890408 -55854490 + AT_rich Low_complexity Low_complexity 1 28 0 1396 169 126 90 chr13 63890418 63890863 -55854035 - LOR1b LTR ERV1 0 461 1 345 276 13 20 chr13 63890905 63891057 -55853841 + MER114 LTR ERV 17 167 -481 6371 182 44 26 chr13 63891202 63891881 -55853017 - L1M4 LINE L1 -2164 5401 4735 194 62 31 0 chr13 63891881 63891913 -55852985 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6371 182 44 26 chr13 63891913 63893931 -55850967 - L1M4 LINE L1 -2830 4735 2591 2241 121 47 0 chr13 63893931 63894270 -55850628 + THE1A LTR MaLR 1 355 0 8754 125 12 5 chr13 63894270 63895559 -55849339 + THE1A-int LTR MaLR 1 1298 -282 263 132 0 0 chr13 63895561 63895599 -55849299 + THE1A LTR MaLR 318 355 0 11724 229 44 12 chr13 63895599 63896412 -55848486 - L1M4 LINE L1 -4970 2595 1809 240 35 0 0 chr13 63896412 63896441 -55848457 + (TC)n Simple_repeat Simple_repeat 2 30 0 11724 229 44 12 chr13 63896441 63897726 -55847172 - L1M4 LINE L1 -5756 1809 402 2630 25 0 25 chr13 63897726 63898045 -55846853 - AluYa5 SINE Alu 0 311 1 11724 229 44 12 chr13 63898045 63898446 -55846452 - L1M4 LINE L1 -7163 402 15 22 70 0 0 chr13 63898659 63898702 -55846196 + AT_rich Low_complexity Low_complexity 1 43 0 3102 245 56 13 chr13 63898758 63899672 -55845226 + Charlie6 DNA MER1_type 675 1627 -1873 1548 216 22 35 chr13 63899684 63900055 -55844843 + L1M3e LINE L1 7 372 -6658 891 184 47 54 chr13 63900053 63900484 -55844414 + L1MC1 LINE L1 4339 6326 -7 * 995 217 13 21 chr13 63900500 63900735 -55844163 + L1MC3 LINE L1 7461 7693 -92 365 340 26 26 chr13 63900738 63900891 -55844007 - MIR SINE MIR -71 191 39 225 260 0 59 chr13 63900893 63901062 -55843836 + A-rich Low_complexity Low_complexity 1 159 0 22 0 0 0 chr13 63901103 63901125 -55843773 + AT_rich Low_complexity Low_complexity 1 22 0 199 333 111 33 chr13 63901641 63901794 -55843104 - MIR SINE MIR -50 212 48 360 111 0 0 chr13 63903791 63903845 -55841053 + (TA)n Simple_repeat Simple_repeat 2 55 0 1924 218 19 58 chr13 63904075 63904607 -55840291 - MER67D LTR ERV1 0 514 4 262 309 24 41 chr13 63906460 63906583 -55838315 + L2 LINE L2 2638 2758 -556 1714 113 0 4 chr13 63907294 63907532 -55837366 - AluSc SINE Alu 0 309 73 4890 92 27 7 chr13 63907534 63907648 -55837250 - LTR30 LTR ERV1 0 722 612 5839 79 3 8 chr13 63907648 63908432 -55836466 - LTR17 LTR ERV1 0 780 1 4890 92 27 7 chr13 63908432 63909025 -55835873 - LTR30 LTR ERV1 -110 612 1 430 149 0 0 chr13 63909025 63909099 -55835799 - AluSc SINE Alu -236 74 1 1276 180 173 4 chr13 63909573 63909851 -55835047 - MER7A DNA MER2_type 0 346 24 29 47 0 0 chr13 63910400 63910443 -55834455 + AT_rich Low_complexity Low_complexity 1 43 0 1350 226 58 51 chr13 63910950 63911343 -55833555 + MSTD LTR MaLR 1 396 0 198 171 0 0 chr13 63911576 63911617 -55833281 + (TTA)n Simple_repeat Simple_repeat 3 43 0 25 31 0 0 chr13 63912205 63912237 -55832661 + AT_rich Low_complexity Low_complexity 1 32 0 333 0 0 0 chr13 63913184 63913221 -55831677 + (TG)n Simple_repeat Simple_repeat 2 38 0 28 48 0 0 chr13 63913465 63913507 -55831391 + AT_rich Low_complexity Low_complexity 1 42 0 381 282 30 15 chr13 63913917 63914048 -55830850 - MIR SINE MIR -12 250 118 21 36 0 0 chr13 63914114 63914142 -55830756 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 63914208 63914237 -55830661 + AT_rich Low_complexity Low_complexity 1 29 0 3572 155 41 9 chr13 63914476 63915109 -55829789 + MER39B LTR ERV1 1 653 0 188 413 43 0 chr13 63915544 63915636 -55829262 + L2 LINE L2 3166 3261 -11 762 199 27 14 chr13 63916064 63916210 -55828688 - AluJb SINE Alu -31 281 134 2015 120 0 3 chr13 63916622 63916941 -55827957 - AluY SINE Alu 0 318 1 22 0 0 0 chr13 63917847 63917869 -55827029 + AT_rich Low_complexity Low_complexity 1 22 0 1733 178 24 42 chr13 63918822 63919204 -55825694 + THE1C LTR MaLR 1 375 0 8033 137 75 50 chr13 63919204 63920745 -55824153 + THE1C-int LTR MaLR 1 1580 0 1545 159 41 38 chr13 63920745 63921060 -55823838 + THE1C LTR MaLR 1 316 -59 1824 142 25 0 chr13 63921060 63921334 -55823564 + AluSx SINE Alu 1 281 -31 234 229 0 0 chr13 63921431 63921479 -55823419 - L2 LINE L2 -12 3260 3213 23 0 0 0 chr13 63922232 63922255 -55822643 + AT_rich Low_complexity Low_complexity 1 23 0 194 313 193 23 chr13 63922563 63922739 -55822159 + L2 LINE L2 3015 3220 -93 1946 196 57 67 chr13 63922739 63923222 -55821676 + MLT2B1 LTR ERVL 1 480 -40 525 38 38 0 chr13 63923222 63923302 -55821596 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 1946 196 57 67 chr13 63923302 63923343 -55821555 + MLT2B1 LTR ERVL 480 520 0 421 231 29 87 chr13 63923981 63924154 -55820744 - L1ME3 LINE L1 -7 6155 5993 31 26 0 0 chr13 63924310 63924348 -55820550 + AT_rich Low_complexity Low_complexity 1 38 0 1413 250 19 3 chr13 63924628 63924948 -55819950 - MLT1A1 LTR MaLR -3 362 38 2089 106 36 3 chr13 63925226 63925527 -55819371 - AluSx SINE Alu 0 312 2 348 246 45 8 chr13 63925707 63925841 -55819057 - L1 LINE L1 -1479 4667 4529 2833 169 28 35 chr13 63925847 63926414 -55818484 - L1MC1 LINE L1 -225 6108 5546 933 161 0 25 chr13 63926904 63927066 -55817832 - FRAM SINE Alu -10 166 9 48 32 0 0 chr13 63927337 63927399 -55817499 + AT_rich Low_complexity Low_complexity 1 62 0 2065 129 0 0 chr13 63927502 63927788 -55817110 - AluY SINE Alu -25 286 1 258 32 0 0 chr13 63927879 63927910 -55816988 + (CA)n Simple_repeat Simple_repeat 1 31 0 333 333 0 29 chr13 63928168 63928273 -55816625 + MER91A DNA MER1_type 87 188 -8 607 324 36 24 chr13 63928529 63928776 -55816122 - MIR SINE MIR -11 251 2 7501 197 118 4 chr13 63928780 63930356 -55814542 + MER52A LTR ERV1 1 1755 0 255 365 75 13 chr13 63930400 63930559 -55814339 - MIR SINE MIR -78 184 16 214 295 0 64 chr13 63930896 63931052 -55813846 + A-rich Low_complexity Low_complexity 5 150 0 1834 107 8 0 chr13 63931286 63931530 -55813368 - AluSx SINE Alu -17 295 50 2768 7 0 0 chr13 63934000 63934304 -55810594 - AluY SINE Alu -7 304 1 22 35 0 0 chr13 63934379 63934408 -55810490 + AT_rich Low_complexity Low_complexity 1 29 0 1747 157 0 47 chr13 63934536 63934836 -55810062 - AluSx SINE Alu -26 286 1 388 195 0 11 chr13 63935858 63935945 -55808953 - L1MB3 LINE L1 -1 6182 6097 246 229 48 48 chr13 63937694 63937777 -55807121 + L2 LINE L2 3189 3271 -1 1269 174 5 0 chr13 63938324 63938536 -55806362 + AluJb SINE Alu 86 298 -14 25 90 0 0 chr13 63938782 63938849 -55806049 + AT_rich Low_complexity Low_complexity 1 67 0 401 296 71 91 chr13 63940093 63940502 -55804396 + HAL1 LINE L1 742 1142 -1365 340 281 78 0 chr13 63940748 63940876 -55804022 + L1MEd LINE L1 895 1032 -5087 359 264 122 79 chr13 63941091 63941485 -55803413 + HAL1 LINE L1 1203 1613 -894 395 268 96 37 chr13 63941783 63942055 -55802843 + HAL1 LINE L1 2108 2395 -112 5787 218 44 23 chr13 63942180 63942302 -55802596 - L1 LINE L1 -990 5156 5038 2091 120 40 29 chr13 63942302 63942653 -55802245 - THE1A LTR MaLR 0 355 1 10702 106 24 0 chr13 63942653 63944196 -55800702 - THE1A-int LTR MaLR 0 1580 1 2045 115 14 47 chr13 63944196 63944561 -55800337 - THE1A LTR MaLR 0 355 3 5787 218 44 23 chr13 63944561 63946015 -55798883 - L1 LINE L1 -1107 5039 3545 1157 133 0 0 chr13 63946018 63946183 -55798715 + AluSg/x SINE Alu 137 301 -11 281 133 0 0 chr13 63946183 63946228 -55798670 - L1P LINE L1 -2601 3545 3501 1467 276 10 38 chr13 63946465 63946857 -55798041 - MER70A LTR ERVL -2 470 90 524 282 74 7 chr13 63946856 63946945 -55797953 - MER70A LTR ERVL -313 159 55 * 216 0 0 0 chr13 63946945 63946969 -55797929 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 524 282 74 7 chr13 63946969 63947028 -55797870 - MER70A LTR ERVL -417 55 1 21 0 0 0 chr13 63948126 63948147 -55796751 + AT_rich Low_complexity Low_complexity 1 21 0 256 224 178 19 chr13 63948172 63948279 -55796619 - L2 LINE L2 0 3313 3190 325 202 99 0 chr13 63948288 63948378 -55796520 - MLT1J1 LTR MaLR -6 440 349 1656 179 55 12 chr13 63949350 63949679 -55795219 - MER61A LTR ERV1 0 343 1 574 299 145 31 chr13 63950180 63950610 -55794288 - L2 LINE L2 -125 3188 2714 3931 252 37 8 chr13 63950614 63951534 -55793364 - L1MC4a LINE L1 -29 7779 6822 261 0 0 0 chr13 63951534 63951563 -55793335 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3931 252 37 8 chr13 63951563 63951734 -55793164 - L1MC4a LINE L1 -986 6822 6657 486 206 38 30 chr13 63951739 63951870 -55793028 - FLAM_A SINE Alu -1 132 1 426 20 0 0 chr13 63951898 63951949 -55792949 + (CA)n Simple_repeat Simple_repeat 2 52 0 720 172 66 0 chr13 63952033 63952184 -55792714 + AluSg/x SINE Alu 136 296 -16 22 35 0 0 chr13 63953186 63953215 -55791683 + AT_rich Low_complexity Low_complexity 1 29 0 360 64 0 0 chr13 63953937 63953984 -55790914 + (CA)n Simple_repeat Simple_repeat 1 47 0 623 311 146 17 chr13 63954364 63954721 -55790177 + L2 LINE L2 2911 3313 0 21 0 0 0 chr13 63955923 63955944 -55788954 + AT_rich Low_complexity Low_complexity 1 21 0 3846 128 167 17 chr13 63956021 63956858 -55788040 + pTR5 LTR ERV1 270 2606 0 2506 209 33 29 chr13 63958780 63959411 -55785487 - LTR27 LTR ERV1 0 636 3 2344 67 3 0 chr13 63959734 63960032 -55784866 - AluY SINE Alu -12 299 1 572 275 6 25 chr13 63960538 63960698 -55784200 - MER77 LTR ERV1 -4 601 445 666 197 0 42 chr13 63960699 63960739 -55784159 - FLAM_C SINE Alu -174 138 98 4160 119 11 0 chr13 63960739 63961367 -55783531 - MER41B LTR ERV1 0 635 1 666 197 0 42 chr13 63961367 63961468 -55783430 - FLAM_C SINE Alu -214 98 3 309 300 29 77 chr13 63961516 63961923 -55782975 - MER77 LTR ERV1 -214 391 22 1880 127 0 50 chr13 63962781 63963111 -55781787 - AluSq SINE Alu 0 315 1 5199 196 20 11 chr13 63963395 63963478 -55781420 - L1PA15 LINE L1 -2 6163 6082 1644 160 4 0 chr13 63963478 63963734 -55781164 - AluSx SINE Alu -27 285 29 5199 196 20 11 chr13 63963734 63965587 -55779311 - L1PA15 LINE L1 -83 6082 4212 6491 215 14 8 chr13 63965587 63967026 -55777872 + L1PA15 LINE L1 2792 4238 -1908 2101 125 0 0 chr13 63967611 63967906 -55776992 - AluSq SINE Alu -15 298 4 28 79 0 0 chr13 63967909 63967972 -55776926 + AT_rich Low_complexity Low_complexity 1 63 0 916 345 22 34 chr13 63968346 63968792 -55776106 + L1M3a LINE L1 12 452 -5503 325 363 92 23 chr13 63969051 63969467 -55775431 + L1M3a LINE L1 306 782 -5173 2286 288 47 18 chr13 63969489 63971061 -55773837 + L1M3a LINE L1 345 1770 -4265 2086 123 0 0 chr13 63971061 63971384 -55773514 + AluSx SINE Alu 1 323 0 2286 288 47 18 chr13 63971384 63971492 -55773406 + L1M3a LINE L1 1770 1873 -4162 33 85 0 0 chr13 63971526 63971608 -55773290 + AT_rich Low_complexity Low_complexity 1 82 0 447 306 62 48 chr13 63971677 63972111 -55772787 - L1M4 LINE L1 -1333 4813 4374 566 318 130 20 chr13 63972599 63972898 -55772000 + MLT1I LTR MaLR 70 401 -8 335 339 85 34 chr13 63973111 63973347 -55771551 + L2 LINE L2 2837 3084 -188 27 29 0 0 chr13 63974161 63974195 -55770703 + AT_rich Low_complexity Low_complexity 1 34 0 3058 188 31 73 chr13 63974563 63975360 -55769538 - L1MA7 LINE L1 -10 6281 5518 260 329 0 0 chr13 63975378 63975448 -55769450 + L2 LINE L2 3242 3311 -2 257 236 45 0 chr13 63975542 63975631 -55769267 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 24 67 0 0 chr13 63975671 63975716 -55769182 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr13 63976881 63976905 -55767993 + AT_rich Low_complexity Low_complexity 1 24 0 629 271 29 29 chr13 63977509 63977719 -55767179 - LTR16C LTR ERVL -9 482 273 200 238 0 0 chr13 63978973 63979015 -55765883 + (TA)n Simple_repeat Simple_repeat 2 43 0 190 335 93 6 chr13 63981886 63982047 -55762851 - L2 LINE L2 -925 2389 2215 189 171 0 0 chr13 63982112 63982147 -55762751 + (CA)n Simple_repeat Simple_repeat 2 36 0 351 244 0 0 chr13 63982223 63982313 -55762585 + L1MC4 LINE L1 6614 6703 -1339 1960 104 19 0 chr13 63982348 63982618 -55762280 - AluSx SINE Alu -17 295 21 194 200 138 12 chr13 63982868 63982948 -55761950 - L3 LINE CR1 -653 924 835 192 189 0 27 chr13 63983248 63983285 -55761613 + L2 LINE L2 3261 3296 -17 22 35 0 0 chr13 63983688 63983717 -55761181 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 63985432 63985458 -55759440 + AT_rich Low_complexity Low_complexity 1 26 0 2639 317 176 18 chr13 63985475 63986632 -55758266 - L2 LINE L2 -541 2773 1284 2049 105 20 3 chr13 63986632 63986928 -55757970 + AluSc SINE Alu 1 301 -8 2639 317 176 18 chr13 63986928 63987390 -55757508 - L2 LINE L2 -2030 1284 897 2197 102 0 22 chr13 63987851 63988166 -55756732 - AluY SINE Alu -3 308 1 203 355 58 36 chr13 63988203 63988341 -55756557 - MIR SINE MIR -74 188 48 355 284 52 77 chr13 63988725 63988919 -55755979 - MER93a LTR ERV1 -16 386 198 389 251 61 52 chr13 63988969 63989144 -55755754 - MER93a LTR ERV1 -216 187 10 21 57 0 0 chr13 63992274 63992309 -55752589 + AT_rich Low_complexity Low_complexity 1 35 0 331 211 98 18 chr13 63992837 63993000 -55751898 - HsTC2 DNA Tc2 -2 1896 5 1576 251 45 57 chr13 63993637 63994198 -55750700 - MLT2B2 LTR ERVL 0 554 1 276 313 80 0 chr13 63994447 63994559 -55750339 - LTR16C LTR ERVL -8 483 363 232 271 0 0 chr13 63995013 63995061 -55749837 + A-rich Low_complexity Low_complexity 3 50 0 604 356 43 23 chr13 63995297 63995690 -55749208 - ERVL LTR ERVL -2130 3634 3234 22 35 0 0 chr13 63996619 63996648 -55748250 + AT_rich Low_complexity Low_complexity 1 29 0 328 320 130 83 chr13 63996770 63997217 -55747681 + MLT1K LTR MaLR 94 561 -27 206 379 53 30 chr13 64000150 64000282 -55744616 - L2 LINE L2 0 3272 3138 23 33 0 0 chr13 64001556 64001586 -55743312 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr13 64002439 64002475 -55742423 + AT_rich Low_complexity Low_complexity 1 36 0 578 265 72 17 chr13 64002894 64003075 -55741823 - MIR3 SINE MIR -3 205 15 324 304 0 0 chr13 64003082 64003184 -55741714 + L1MC4 LINE L1 6614 6715 -1327 268 213 66 33 chr13 64004588 64004710 -55740188 - MER5C DNA MER1_type -1 323 198 747 180 6 66 chr13 64004715 64004740 -55740158 - L1 LINE L1 -1317 4829 4804 2816 164 20 6 chr13 64004740 64005287 -55739611 - L1MA8 LINE L1 -4 6287 5733 747 180 6 66 chr13 64005287 64005444 -55739454 - L1 LINE L1 -1342 4804 4658 34 42 0 0 chr13 64005785 64005833 -55739065 + AT_rich Low_complexity Low_complexity 1 48 0 1499 220 0 7 chr13 64006159 64006464 -55738434 - AluJo SINE Alu -7 305 3 464 246 42 0 chr13 64006669 64006787 -55738111 - MER5C DNA MER1_type -200 124 2 230 222 0 37 chr13 64007510 64007564 -55737334 + MLT1L LTR MaLR 457 508 -107 23 54 0 0 chr13 64007824 64007861 -55737037 + AT_rich Low_complexity Low_complexity 1 37 0 248 190 0 52 chr13 64007861 64007919 -55736979 - HAL1 LINE L1 -919 1588 1534 386 311 46 33 chr13 64008276 64008517 -55736381 - L1MEd LINE L1 -5279 840 597 25 51 0 0 chr13 64008977 64009016 -55735882 + AT_rich Low_complexity Low_complexity 1 39 0 405 70 0 0 chr13 64009229 64009286 -55735612 + (CA)n Simple_repeat Simple_repeat 2 58 0 1052 222 18 107 chr13 64010626 64011027 -55733871 + MLT1A1 LTR MaLR 1 365 0 2349 159 3 0 chr13 64012809 64013181 -55731717 + LTR57 LTR ERVL 1 373 -38 261 0 0 0 chr13 64013601 64013630 -55731268 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 314 96 0 19 chr13 64013629 64013681 -55731217 + (TA)n Simple_repeat Simple_repeat 2 52 0 2332 83 3 0 chr13 64013842 64014177 -55730721 + AluY SINE Alu 1 336 0 28 111 0 0 chr13 64015118 64015244 -55729654 + AT_rich Low_complexity Low_complexity 1 126 0 23 0 0 0 chr13 64015417 64015440 -55729458 + AT_rich Low_complexity Low_complexity 1 23 0 7275 131 21 8 chr13 64015524 64017510 -55727388 - L1PA10 LINE L1 -1 6167 4155 7359 132 3 21 chr13 64017517 64018786 -55726112 - L1PA10 LINE L1 -2176 3970 2725 787 280 67 97 chr13 64018786 64019282 -55725616 + L2 LINE L2 2831 3311 -2 388 95 102 0 chr13 64021333 64021470 -55723428 + (TA)n Simple_repeat Simple_repeat 2 152 0 314 311 11 0 chr13 64021502 64021592 -55723306 + L2 LINE L2 2881 2971 -343 1526 201 69 56 chr13 64022284 64022743 -55722155 - MER31B LTR ERV1 0 661 3 235 256 12 24 chr13 64022752 64022834 -55722064 + L2 LINE L2 2328 2408 -906 1454 191 24 38 chr13 64022969 64023262 -55721636 - AluJb SINE Alu -19 293 5 1012 258 84 3 chr13 64023376 64023922 -55720976 - L1MDa LINE L1 -3597 2809 2226 1326 235 32 18 chr13 64023958 64024358 -55720540 - L1MDa LINE L1 -4616 1790 1385 490 229 379 0 chr13 64024358 64024498 -55720400 + Tigger5 DNA MER2_type 2 194 -2129 298 190 35 0 chr13 64024495 64024553 -55720345 + Tigger5 DNA MER2_type 2244 2303 -20 * 580 235 81 18 chr13 64024568 64024789 -55720109 - L1MDa LINE L1 -5011 1398 1164 5002 190 35 14 chr13 64024791 64025295 -55719603 - L1MC2 LINE L1 -9 6335 5843 1625 190 55 6 chr13 64025295 64025643 -55719255 - MLT1A1 LTR MaLR 0 365 1 5002 190 35 14 chr13 64025643 64026291 -55718607 - L1MC2 LINE L1 -501 5843 5164 1331 232 12 18 chr13 64026295 64026627 -55718271 - L1MB8 LINE L1 -37 6141 5812 3311 255 80 48 chr13 64026674 64027692 -55717206 - L1MDa LINE L1 -5233 1176 117 2177 158 64 12 chr13 64027692 64028097 -55716801 - MSTB LTR MaLR 0 426 1 3311 255 80 48 chr13 64028097 64028218 -55716680 - L1MDa LINE L1 -6292 117 1 1947 114 32 11 chr13 64028381 64028662 -55716236 + AluSp SINE Alu 1 287 -26 650 275 127 33 chr13 64030059 64030465 -55714433 + MLT1E LTR MaLR 1 526 -67 293 272 11 54 chr13 64030596 64030688 -55714210 - MLT1J LTR MaLR -74 437 350 3321 190 13 9 chr13 64032101 64033359 -55711539 + L1MA9 LINE L1 4999 6312 0 264 217 108 12 chr13 64036003 64036086 -55708812 + L2 LINE L2 3223 3313 0 935 36 0 0 chr13 64037788 64037900 -55706998 - L1PA3 LINE L1 -3 6152 6041 23 54 0 0 chr13 64038213 64038250 -55706648 + AT_rich Low_complexity Low_complexity 1 37 0 32 43 0 0 chr13 64038484 64038530 -55706368 + AT_rich Low_complexity Low_complexity 1 46 0 454 352 75 24 chr13 64038549 64038921 -55705977 + L1ME3A LINE L1 5259 5649 -472 13426 161 32 3 chr13 64038943 64041283 -55703615 - Tigger1 DNA MER2_type -11 2407 1 228 86 0 0 chr13 64041491 64041526 -55703372 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 64044247 64044268 -55700630 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 64044373 64044397 -55700501 + AT_rich Low_complexity Low_complexity 1 24 0 751 200 18 0 chr13 64044469 64044634 -55700264 + L1MB5 LINE L1 5999 6166 -8 1173 225 52 21 chr13 64045124 64045449 -55699449 + L1ME3A LINE L1 5767 6101 -69 29 0 0 0 chr13 64045635 64045664 -55699234 + AT_rich Low_complexity Low_complexity 1 29 0 7731 89 9 2 chr13 64045672 64047546 -55697352 - L1PA8 LINE L1 -45 6127 4244 2813 118 0 2 chr13 64047545 64047960 -55696938 + L1P LINE L1 3917 4330 -1816 * 795 250 45 36 chr13 64048794 64048984 -55695914 + L1MC5 LINE L1 7045 7241 -720 381 22 0 0 chr13 64048984 64049030 -55695868 + (CA)n Simple_repeat Simple_repeat 1 46 0 795 250 45 36 chr13 64049030 64049175 -55695723 + L1MC5 LINE L1 7241 7383 -578 3254 223 101 53 chr13 64049211 64049757 -55695141 + Charlie1a DNA MER1_type 39 557 -2204 5033 63 100 30 chr13 64049757 64050486 -55694412 + LTR17 LTR ERV1 1 780 0 3254 223 101 53 chr13 64050486 64051290 -55693608 + Charlie1a DNA MER1_type 557 1454 -1 279 354 54 45 chr13 64051344 64051658 -55693240 + MLT1H LTR MaLR 29 345 -204 243 333 27 20 chr13 64052021 64052171 -55692727 + L1MC5 LINE L1 7785 7935 -26 26 0 0 0 chr13 64053471 64053497 -55691401 + AT_rich Low_complexity Low_complexity 1 26 0 205 228 24 16 chr13 64054111 64054234 -55690664 + (TA)n Simple_repeat Simple_repeat 1 124 0 485 285 112 17 chr13 64054576 64054742 -55690156 - MIR SINE MIR -10 252 66 1926 105 6 105 chr13 64054742 64055084 -55689814 + AluSx SINE Alu 1 308 -4 485 285 112 17 chr13 64055084 64055096 -55689802 - MIR SINE MIR -196 66 57 296 328 50 109 chr13 64055118 64055356 -55689542 - L2 LINE L2 -41 3231 3008 778 278 87 28 chr13 64056390 64056678 -55688220 + L2 LINE L2 3009 3313 0 211 244 222 0 chr13 64056724 64056814 -55688084 - MER5A DNA MER1_type -1 188 79 209 271 52 52 chr13 64057960 64058056 -55686842 - MIR SINE MIR -6 256 161 2882 3 0 3 chr13 64058707 64059026 -55685872 + AluYb8 SINE Alu 1 318 0 1449 179 10 55 chr13 64059096 64059404 -55685494 + AluJb SINE Alu 3 296 -16 1119 214 26 71 chr13 64059417 64059725 -55685173 + AluJb SINE Alu 1 294 -8 1100 213 13 0 chr13 64059870 64060105 -55684793 - L1 LINE L1 -1815 4331 4094 * 7765 124 37 8 chr13 64060103 64061393 -55683505 - L1PBa LINE L1 -4276 2587 1260 4284 199 65 12 chr13 64061414 64062408 -55682490 - L1PBa LINE L1 -5814 1049 3 465 191 196 18 chr13 64062584 64062752 -55682146 + MER5C DNA MER1_type 127 324 0 971 253 163 46 chr13 64063742 64064145 -55680753 + MLT2B2 LTR ERVL 8 471 -44 414 0 0 0 chr13 64064145 64064191 -55680707 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 971 253 163 46 chr13 64064191 64064242 -55680656 + MLT2B2 LTR ERVL 471 515 0 1057 204 19 0 chr13 64064421 64064632 -55680266 + MLT1B LTR MaLR 1 215 -175 801 198 49 56 chr13 64064632 64064920 -55679978 + pTR5 LTR ERV1 743 1028 -1410 3870 104 215 22 chr13 64064999 64065691 -55679207 + LTR12 LTR ERV1 1 826 0 570 188 88 65 chr13 64065694 64065864 -55679034 + MLT1B LTR MaLR 217 390 0 29 0 0 0 chr13 64065954 64065983 -55678915 + AT_rich Low_complexity Low_complexity 1 29 0 1247 326 25 33 chr13 64167460 64168191 -55576707 + L1PBa LINE L1 698 1422 -5441 668 252 0 7 chr13 64168185 64168328 -55576570 + L1PBa LINE L1 758 899 -5964 * 524 350 4 9 chr13 64168329 64168555 -55576343 + L1PBa LINE L1 1415 1639 -5224 508 292 0 0 chr13 64168522 64168652 -55576246 + L1PBb LINE L1 4 133 -6071 * 453 19 0 0 chr13 64168799 64168853 -55576045 + (CA)n Simple_repeat Simple_repeat 2 55 0 215 103 26 0 chr13 64169144 64169183 -55575715 + CT-rich Low_complexity Low_complexity 1 40 0 207 186 0 0 chr13 64169182 64169225 -55575673 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 302 281 56 11 chr13 64169243 64169332 -55575566 - L2 LINE L2 -16 3297 3205 298 296 61 9 chr13 64170153 64170268 -55574630 + MIR SINE MIR 66 186 -76 12430 147 26 11 chr13 64170859 64172988 -55571910 - Tigger4(Zombi) DNA MER2_type 0 2731 570 1582 119 0 4 chr13 64173201 64173453 -55571445 - L1MA3 LINE L1 -1 6304 6054 9950 171 8 2 chr13 64173522 64174010 -55570888 - L1PA11 LINE L1 0 6174 5690 2267 81 0 0 chr13 64174010 64174326 -55570572 + AluY SINE Alu 1 316 0 9950 171 8 2 chr13 64174326 64176474 -55568424 - L1PA11 LINE L1 -484 5690 3544 22 35 0 0 chr13 64178010 64178039 -55566859 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 64178147 64178168 -55566730 + AT_rich Low_complexity Low_complexity 1 21 0 305 309 40 34 chr13 64178906 64179055 -55565843 + L2 LINE L2 3160 3309 -4 358 368 24 14 chr13 64179552 64179761 -55565137 + MLT1I LTR MaLR 196 406 -3 258 164 284 0 chr13 64180410 64180477 -55564421 + MLT1H LTR MaLR 421 506 -43 1061 213 112 20 chr13 64180490 64180847 -55564051 - MLT1B LTR MaLR 0 390 1 2305 101 7 0 chr13 64180971 64181278 -55563620 + AluSx SINE Alu 2 310 -2 332 129 71 24 chr13 64181457 64181542 -55563356 - L1MA9 LINE L1 -7 6305 6217 514 251 44 49 chr13 64181593 64181796 -55563102 + LTR52 LTR ERVL 15 216 -205 3229 289 82 67 chr13 64181908 64184086 -55560812 + LTR52-int LTR ERVL 1 2220 -1336 234 0 0 0 chr13 64184086 64184112 -55560786 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3229 289 82 67 chr13 64184112 64184340 -55560558 + LTR52-int LTR ERVL 2220 2443 -1113 407 342 40 10 chr13 64184352 64184554 -55560344 + LTR52-int LTR ERVL 2806 3013 -543 546 302 86 34 chr13 64184555 64184997 -55559901 - L1MEc LINE L1 -3651 2564 2133 289 263 59 17 chr13 64185461 64185579 -55559319 - HAL1 LINE L1 -866 1641 1519 342 315 61 80 chr13 64185666 64185993 -55558905 - L1MEc LINE L1 -4875 1330 1010 201 358 49 16 chr13 64186376 64186499 -55558399 + L2 LINE L2 2911 3037 -276 241 164 60 45 chr13 64186652 64186719 -55558179 - L1MC1 LINE L1 -1 6332 6265 1355 213 101 21 chr13 64186723 64187075 -55557823 + MER44D DNA MER2_type 1 441 -2046 1914 124 46 62 chr13 64187075 64187402 -55557496 + THE1B LTR MaLR 1 323 -41 2258 119 3 0 chr13 64187402 64187714 -55557184 - AluSq SINE Alu 0 313 1 1914 124 46 62 chr13 64187714 64187756 -55557142 + THE1B LTR MaLR 323 364 0 1355 213 101 21 chr13 64187756 64187778 -55557120 + MER44D DNA MER2_type 441 460 -145 21 36 0 0 chr13 64189287 64189315 -55555583 + AT_rich Low_complexity Low_complexity 1 28 0 351 44 0 0 chr13 64190944 64190989 -55553909 + (CA)n Simple_repeat Simple_repeat 2 46 0 234 81 0 0 chr13 64191149 64191186 -55553712 + (GA)n Simple_repeat Simple_repeat 2 38 0 310 303 54 5 chr13 64191189 64191374 -55553524 - L1M4 LINE L1 -1296 4850 4657 28 48 0 0 chr13 64192252 64192294 -55552604 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr13 64193634 64193656 -55551242 + AT_rich Low_complexity Low_complexity 1 22 0 988 210 19 130 chr13 64194227 64194589 -55550309 + MER52A LTR ERV1 650 971 -784 897 287 3 28 chr13 64194557 64194846 -55550052 + LTR28 LTR ERV1 437 718 -302 * 232 216 0 126 chr13 64194897 64195008 -55549890 + MER52A LTR ERV1 1363 1459 -296 237 323 8 23 chr13 64195035 64195168 -55549730 + MER52A LTR ERV1 1608 1738 -17 233 267 237 0 chr13 64196191 64196326 -55548572 - MIR SINE MIR -13 249 83 342 360 5 25 chr13 64196865 64197065 -55547833 - L2 LINE L2 -1081 2233 2038 2027 313 133 42 chr13 64198664 64200087 -55544811 - L2 LINE L2 -1269 2045 492 25 0 0 0 chr13 64200634 64200659 -55544239 + AT_rich Low_complexity Low_complexity 1 25 0 408 308 8 0 chr13 64201072 64201192 -55543706 + L2 LINE L2 3193 3313 0 207 260 0 0 chr13 64201999 64202049 -55542849 + (TG)n Simple_repeat Simple_repeat 2 51 0 609 236 29 6 chr13 64202874 64203048 -55541850 + MER5B DNA MER1_type 1 178 0 281 219 14 0 chr13 64203380 64203453 -55541445 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 21 0 0 0 chr13 64204691 64204712 -55540186 + AT_rich Low_complexity Low_complexity 1 21 0 2481 67 0 0 chr13 64205733 64206031 -55538867 + AluSg SINE Alu 1 298 -12 2414 200 33 22 chr13 64206517 64207516 -55537382 + L1MC1 LINE L1 4810 5917 -416 674 199 106 0 chr13 64207534 64207695 -55537203 + L1MC1 LINE L1 6083 6260 -73 396 218 0 35 chr13 64207697 64207784 -55537114 - Tigger7 DNA MER2_type 0 2491 2408 2305 153 33 30 chr13 64207788 64208218 -55536680 - Tigger2a DNA MER2_type -1 433 3 2336 146 76 18 chr13 64208319 64208819 -55536079 - Tigger4(Zombi) DNA MER2_type -1633 1098 570 * 3446 173 72 4 chr13 64208816 64209500 -55535398 - Tigger4(Zombi) DNA MER2_type -2000 731 2 193 347 42 0 chr13 64209940 64210035 -55534863 + MIR SINE MIR 91 189 -73 300 258 32 0 chr13 64210065 64210158 -55534740 - L1MC5 LINE L1 -36 7925 7830 447 19 0 0 chr13 64210755 64210807 -55534091 + (CA)n Simple_repeat Simple_repeat 2 53 0 245 320 0 0 chr13 64211012 64211115 -55533783 - L1MC/D LINE L1 -2027 5781 5679 328 303 171 46 chr13 64211263 64211544 -55533354 + LTR67 LTR ERVL 110 425 -132 387 335 13 46 chr13 64211618 64211880 -55533018 - L1MC/D LINE L1 -716 5448 5194 2367 55 3 0 chr13 64212380 64212673 -55532225 - AluY SINE Alu -17 294 1 186 43 0 0 chr13 64212685 64212708 -55532190 + (T)n Simple_repeat Simple_repeat 1 23 0 401 230 75 46 chr13 64212948 64213122 -55531776 - LTR41 LTR ERVL -592 181 3 226 176 54 40 chr13 64213752 64213826 -55531072 + Charlie8 DNA MER1_type 90 164 -2253 2919 47 8 3 chr13 64213920 64214283 -55530615 - L1PA5 LINE L1 -3 6151 5787 200 250 0 0 chr13 64214455 64214495 -55530403 + T-rich Low_complexity Low_complexity 1 40 0 275 355 59 16 chr13 64214591 64214777 -55530121 + MIR SINE MIR 54 247 -15 2348 178 47 27 chr13 64214947 64215231 -55529667 - Tigger3(Golem) DNA MER2_type 0 3029 2752 261 0 0 0 chr13 64215231 64215260 -55529638 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2348 178 47 27 chr13 64215260 64215526 -55529372 - Tigger3(Golem) DNA MER2_type -277 2752 2468 192 179 77 0 chr13 64216290 64216329 -55528569 - L2 LINE L2 -11 3302 3261 198 0 0 0 chr13 64216904 64216926 -55527972 + (TA)n Simple_repeat Simple_repeat 2 23 0 3229 73 4 20 chr13 64216926 64217376 -55527522 - L1PA5 LINE L1 -5 6149 5707 277 241 179 18 chr13 64217608 64217720 -55527178 + SATR1 Satellite Satellite 197 326 -144 701 220 246 51 chr13 64217821 64218996 -55525902 + SATR1 Satellite Satellite 1 1403 -3 854 223 229 45 chr13 64219035 64219924 -55524974 + SATR1 Satellite Satellite 1 1052 -1 298 229 107 69 chr13 64219947 64220078 -55524820 + SATR1 Satellite Satellite 185 320 -150 303 281 79 133 chr13 64220807 64221227 -55523671 + L1M4b LINE L1 209 605 -6254 3670 120 3 8 chr13 64221267 64221865 -55523033 + HERVE LTR ERV1 3249 3843 -3970 3670 119 3 8 chr13 64222258 64222854 -55522044 + HERVE LTR ERV1 3251 3843 -3970 3740 117 3 7 chr13 64222923 64223523 -55521375 + HERVE LTR ERV1 3249 3846 -3967 3646 123 5 7 chr13 64224622 64225221 -55519677 + HERVE LTR ERV1 3249 3846 -3967 3684 114 5 10 chr13 64225684 64226282 -55518616 + HERVE LTR ERV1 3249 3843 -3970 3734 117 5 10 chr13 64226351 64226952 -55517946 + HERVE LTR ERV1 3249 3846 -3967 5210 95 1 0 chr13 64227680 64228396 -55516502 + L1PA8 LINE L1 5455 6171 -1 252 259 80 28 chr13 64228438 64228650 -55516248 - L1M4 LINE L1 -1637 4509 4287 5153 201 46 7 chr13 64228658 64229878 -55515020 - L1PBa LINE L1 -4487 1717 592 1745 141 131 50 chr13 64229878 64230274 -55514624 - MSTA LTR MaLR 0 428 1 5153 201 46 7 chr13 64230274 64230890 -55514008 - L1PBa LINE L1 -5612 592 1 780 209 0 7 chr13 64230884 64231032 -55513866 - L1PBb LINE L1 -5959 245 99 * 2618 292 42 56 chr13 64231026 64232442 -55512456 - L1PBa LINE L1 -5441 1422 27 354 98 0 0 chr13 64232493 64232544 -55512354 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 * 1579 115 18 65 chr13 64232544 64232822 -55512076 - AluSq SINE Alu 0 313 49 3094 160 38 9 chr13 64232822 64233393 -55511505 - Tigger3b DNA MER2_type -2437 591 1 228 268 41 21 chr13 64235618 64235715 -55509183 - MIR SINE MIR -113 149 51 1241 305 70 3 chr13 64238585 64238972 -55505926 + MER70B LTR ERVL 34 446 -132 326 289 59 30 chr13 64238990 64239125 -55505773 - MLT1H LTR MaLR -312 237 99 1339 170 133 74 chr13 64239724 64240183 -55504715 - L1MA9 LINE L1 -10 6302 5817 496 249 103 30 chr13 64242309 64242474 -55502424 - MER5B DNA MER1_type 0 178 2 12460 193 51 71 chr13 64242756 64244277 -55500621 + L1MA4A LINE L1 1 1550 -5455 2136 196 26 16 chr13 64244277 64244700 -55500198 + MSTB1 LTR MaLR 6 432 0 12460 193 51 71 chr13 64244700 64247359 -55497539 + L1MA4A LINE L1 1550 4260 -2745 189 0 0 0 chr13 64247359 64247380 -55497518 + (CAA)n Simple_repeat Simple_repeat 1 21 0 12460 193 51 71 chr13 64247380 64247986 -55496912 + L1MA4A LINE L1 4260 4876 -2129 1207 34 22 17 chr13 64247986 64248164 -55496734 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1700 186 0 4 chr13 64248164 64248444 -55496454 - AluSx SINE Alu -33 279 1 12460 193 51 71 chr13 64248444 64248597 -55496301 + L1MA4A LINE L1 4875 5029 -1976 216 0 0 0 chr13 64248597 64248621 -55496277 + (CA)n Simple_repeat Simple_repeat 1 24 0 12460 193 51 71 chr13 64248621 64250391 -55494507 + L1MA4A LINE L1 5029 7000 -5 24 53 0 0 chr13 64252092 64252130 -55492768 + AT_rich Low_complexity Low_complexity 1 38 0 740 203 76 0 chr13 64252139 64252297 -55492601 - FRAM SINE Alu -1 175 6 26 0 0 0 chr13 64254358 64254384 -55490514 + AT_rich Low_complexity Low_complexity 1 26 0 932 178 35 6 chr13 64254394 64254563 -55490335 - AluJo SINE Alu -138 174 1 772 237 30 6 chr13 64254751 64254920 -55489978 + MER58B DNA MER1_type 167 339 -2 22 0 0 0 chr13 64255090 64255112 -55489786 + AT_rich Low_complexity Low_complexity 1 22 0 1378 150 184 26 chr13 64255133 64255399 -55489499 + AluSx SINE Alu 1 308 -4 921 202 6 16 chr13 64256001 64256184 -55488714 - MER1B DNA MER1_type -116 181 1 1080 341 114 13 chr13 64256201 64256891 -55488007 + L2 LINE L2 1471 2230 -1084 543 351 9 5 chr13 64256999 64257210 -55487688 + L2 LINE L2 2190 2401 -913 1817 182 67 42 chr13 64257210 64257599 -55487299 + MER65A LTR ERV1 1 404 -41 2808 7 0 0 chr13 64257599 64257909 -55486989 - AluYa5 SINE Alu -1 310 1 1817 182 67 42 chr13 64257909 64257952 -55486946 + MER65A LTR ERV1 404 444 -1 7405 214 63 53 chr13 64258037 64259686 -55485212 + MER65A-int LTR ERV1 83 1714 -3157 2639 137 17 2 chr13 64259686 64260108 -55484790 + MSTA LTR MaLR 1 428 0 7405 214 63 53 chr13 64260108 64260402 -55484496 + MER65A-int LTR ERV1 1714 2004 -2867 695 215 0 0 chr13 64260402 64260532 -55484366 - FLAM_A SINE Alu 0 133 4 7405 214 63 53 chr13 64260532 64260974 -55483924 + MER65A-int LTR ERV1 2004 2493 -2378 626 219 102 16 chr13 64261077 64261264 -55483634 + MER65A-int LTR ERV1 1541 1743 -6377 973 192 25 82 chr13 64261280 64261839 -55483059 + MER65A-int LTR ERV1 1720 2420 -4338 2850 124 41 12 chr13 64262035 64262526 -55482372 + L1PA13 LINE L1 5655 6159 -4 740 206 37 49 chr13 64262569 64262812 -55482086 + MER65A-int LTR ERV1 3493 3732 -2866 1602 227 93 73 chr13 64262897 64264206 -55480692 + MER65A-int LTR ERV1 2469 5583 -1015 302 271 0 35 chr13 64264220 64264305 -55480593 + MER65A-int LTR ERV1 5181 5262 -1069 1422 271 63 17 chr13 64264399 64264812 -55480086 + MER65A-int LTR ERV1 3622 4053 -818 * 1522 268 38 13 chr13 64264796 64265248 -55479650 + MER65A-int LTR ERV1 4409 4871 0 1932 148 131 13 chr13 64265248 64265646 -55479252 + MER65A LTR ERV1 1 445 0 952 357 48 25 chr13 64265659 64266389 -55478509 + L2 LINE L2 2412 3173 -140 963 248 51 68 chr13 64266389 64266902 -55477996 + MLT1D LTR MaLR 1 504 -1 952 357 48 25 chr13 64266902 64267047 -55477851 + L2 LINE L2 3173 3313 0 2260 91 3 0 chr13 64267572 64267879 -55477019 + AluSp SINE Alu 1 308 -5 387 300 0 10 chr13 64268021 64268121 -55476777 + MER81 DNA DNA 14 112 -2 22 56 0 0 chr13 64270209 64270245 -55474653 + AT_rich Low_complexity Low_complexity 1 36 0 276 30 0 0 chr13 64270492 64270525 -55474373 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1485 233 64 3 chr13 64270531 64270875 -55474023 + MLT1A1 LTR MaLR 1 365 0 488 255 26 7 chr13 64270875 64271028 -55473870 + L1ME3A LINE L1 1890 2045 -4351 901 193 28 11 chr13 64271029 64271210 -55473688 + MLT1A1 LTR MaLR 1 184 -181 285 203 17 0 chr13 64271193 64271252 -55473646 + THE1A LTR MaLR 296 355 0 * 310 324 67 11 chr13 64271394 64271755 -55473143 + L1ME3A LINE L1 2219 2599 -3616 23 33 0 0 chr13 64272084 64272114 -55472784 + AT_rich Low_complexity Low_complexity 1 30 0 247 266 95 6 chr13 64272210 64272368 -55472530 + L1ME3A LINE L1 3367 3538 -2677 353 302 86 12 chr13 64272751 64273172 -55471726 + L1ME3A LINE L1 4306 4757 -1458 402 332 141 19 chr13 64273206 64273576 -55471322 + L1ME3A LINE L1 4838 5252 -963 385 198 19 0 chr13 64273679 64273785 -55471113 + (TA)n Simple_repeat Simple_repeat 1 108 0 226 188 125 0 chr13 64273853 64273933 -55470965 - L1MC4 LINE L1 -1339 6703 6614 771 319 62 56 chr13 64273984 64274753 -55470145 + L1ME3A LINE L1 5443 6216 -23 474 18 0 0 chr13 64275074 64275129 -55469769 + (TA)n Simple_repeat Simple_repeat 2 56 0 225 0 0 0 chr13 64275129 64275156 -55469742 - L1PA3 LINE L1 -13 6142 6116 230 259 0 24 chr13 64275252 64275337 -55469561 + L1ME4a LINE L1 6021 6103 -18 23 68 0 0 chr13 64275340 64275384 -55469514 + AT_rich Low_complexity Low_complexity 1 44 0 546 91 11 34 chr13 64275473 64275561 -55469337 + L1MA5 LINE L1 6134 6219 -81 21 36 0 0 chr13 64275609 64275637 -55469261 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 64275817 64275844 -55469054 + AT_rich Low_complexity Low_complexity 1 27 0 993 128 34 0 chr13 64276500 64276649 -55468249 + L1PA15 LINE L1 6004 6157 -8 303 333 67 7 chr13 64276811 64276946 -55467952 + MIR SINE MIR 83 225 -37 1258 144 88 0 chr13 64277054 64277304 -55467594 + L1MA4 LINE L1 6023 6294 -6 30 0 0 0 chr13 64277820 64277850 -55467048 + AT_rich Low_complexity Low_complexity 1 30 0 1833 114 50 7 chr13 64279128 64279408 -55465490 + AluSx SINE Alu 5 296 -16 198 0 0 0 chr13 64279565 64279587 -55465311 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 299 289 104 49 chr13 64280458 64280870 -55464028 - L1ME3A LINE L1 -153 5951 5424 467 271 74 84 chr13 64281019 64281709 -55463189 - L1ME3A LINE L1 -867 5213 4531 2937 213 72 31 chr13 64281940 64282828 -55462070 + L1MB8 LINE L1 5179 6094 -84 234 62 0 0 chr13 64284683 64284715 -55460183 + (CA)n Simple_repeat Simple_repeat 2 33 0 411 38 0 0 chr13 64284740 64284793 -55460105 + (TA)n Simple_repeat Simple_repeat 1 53 0 621 241 0 15 chr13 64285348 64285481 -55459417 + MLT1A1 LTR MaLR 1 131 -297 1011 56 0 0 chr13 64285503 64285628 -55459270 + AluSp SINE Alu 1 125 -188 804 258 17 0 chr13 64285707 64285885 -55459013 + MLT1A1 LTR MaLR 185 365 0 2316 118 88 13 chr13 64285927 64286324 -55458574 - MSTA LTR MaLR -1 427 1 338 260 8 16 chr13 64286730 64286896 -55458002 + (TAGA)n Simple_repeat Simple_repeat 1 164 0 269 227 40 0 chr13 64288639 64288714 -55456184 + MLT1H1 LTR MaLR 464 541 -14 226 377 38 19 chr13 64288876 64289035 -55455863 + L3 LINE CR1 963 1124 -453 213 94 0 0 chr13 64290210 64290242 -55454656 + (TC)n Simple_repeat Simple_repeat 1 32 0 3893 190 24 10 chr13 64290350 64291160 -55453738 + L1PB4 LINE L1 5336 6156 0 253 207 21 117 chr13 64291146 64291291 -55453607 + L1M4 LINE L1 2270 2400 -3746 * 305 222 73 94 chr13 64291381 64291669 -55453229 + L1M4 LINE L1 3053 3334 -2812 613 319 69 0 chr13 64291734 64292094 -55452804 - L1ME3A LINE L1 -2252 3828 3444 238 322 93 0 chr13 64292105 64292223 -55452675 - L1ME3A LINE L1 -2709 3371 3243 1477 297 94 18 chr13 64292808 64293583 -55451315 - L1ME3A LINE L1 -5235 835 2 2568 180 17 10 chr13 64293609 64294092 -55450806 - MER66B LTR ERV1 0 486 1 23 0 0 0 chr13 64295024 64295047 -55449851 + AT_rich Low_complexity Low_complexity 1 23 0 268 221 47 0 chr13 64295653 64295739 -55449159 - L1MC4 LINE L1 -1339 6703 6614 254 244 61 26 chr13 64296995 64297110 -55447788 + L1ME3 LINE L1 6041 6159 -3 265 292 0 0 chr13 64297694 64297759 -55447139 + (TG)n Simple_repeat Simple_repeat 2 66 0 1872 168 61 52 chr13 64297801 64298225 -55446673 - MSTA LTR MaLR 0 428 1 409 208 11 137 chr13 64298438 64298621 -55446277 + MER58C DNA MER1_type 52 211 -4 260 290 0 0 chr13 64298959 64299028 -55445870 - LTR16B LTR ERVL -4 460 392 623 310 69 12 chr13 64299610 64299855 -55445043 - LTR16B LTR ERVL -193 271 13 1880 162 10 0 chr13 64299855 64300145 -55444753 + AluSx SINE Alu 1 293 -19 689 161 17 23 chr13 64300959 64301133 -55443765 + CT-rich Low_complexity Low_complexity 1 173 0 296 143 18 0 chr13 64301126 64301182 -55443716 + C-rich Low_complexity Low_complexity 4 60 0 * 362 115 58 11 chr13 64301179 64301266 -55443632 + CT-rich Low_complexity Low_complexity 1 91 0 1127 276 83 43 chr13 64302542 64303071 -55441827 + MER68 LTR ERV1 9 558 -4 25 65 0 0 chr13 64303409 64303455 -55441443 + AT_rich Low_complexity Low_complexity 1 46 0 1687 141 30 0 chr13 64303796 64304065 -55440833 + AluSq SINE Alu 12 288 -25 2269 165 15 35 chr13 64304294 64304748 -55440150 - MER65A LTR ERV1 0 445 1 3615 263 94 66 chr13 64304754 64307021 -55437877 - MER65A-int LTR ERV1 -6 4865 2534 380 190 33 58 chr13 64307021 64307142 -55437756 - MER65A-int LTR ERV1 -2232 2639 2522 209 146 21 0 chr13 64307364 64307412 -55437486 + (TA)n Simple_repeat Simple_repeat 1 49 0 346 219 81 8 chr13 64307503 64307626 -55437272 - MER4-int LTR ERV1 -2586 4012 3881 203 167 0 0 chr13 64308702 64308738 -55436160 + (TG)n Simple_repeat Simple_repeat 1 36 0 878 73 0 8 chr13 64308752 64308876 -55436022 + (TTCC)n Simple_repeat Simple_repeat 3 125 0 1029 209 100 4 chr13 64308951 64309200 -55435698 - AluSx SINE Alu -37 275 3 350 221 61 61 chr13 64311339 64311566 -55433332 - MLT1D LTR MaLR -227 240 12 21 0 0 0 chr13 64312463 64312484 -55432414 + AT_rich Low_complexity Low_complexity 1 21 0 192 297 187 26 chr13 64313262 64313417 -55431481 - MIR SINE MIR -4 258 79 216 0 0 0 chr13 64313831 64313855 -55431043 + (TA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr13 64314207 64314235 -55430663 + AT_rich Low_complexity Low_complexity 1 28 0 180 234 0 0 chr13 64314707 64314754 -55430144 + (TG)n Simple_repeat Simple_repeat 1 47 0 1774 135 0 0 chr13 64314997 64315257 -55429641 + AluSq SINE Alu 49 308 -5 189 316 35 128 chr13 64315260 64315548 -55429350 - L2 LINE L2 -78 3194 2934 483 245 17 56 chr13 64316073 64316248 -55428650 + MER5A DNA MER1_type 8 166 -12 1919 135 35 0 chr13 64316633 64316921 -55427977 + AluSg SINE Alu 1 298 -12 399 145 0 53 chr13 64316941 64317017 -55427881 + FLAM SINE Alu 57 128 -5 483 256 94 34 chr13 64317723 64317957 -55426941 + L1M4 LINE L1 3952 4199 -1947 312 299 8 39 chr13 64317958 64318085 -55426813 + L1MEc LINE L1 2134 2256 -4140 1725 179 112 32 chr13 64318193 64318595 -55426303 - Tigger2a DNA MER2_type 0 434 1 1340 230 58 27 chr13 64318998 64319109 -55425789 - L1MA9 LINE L1 -33 6156 6050 291 28 0 0 chr13 64319109 64319145 -55425753 + (TG)n Simple_repeat Simple_repeat 2 37 0 1340 230 58 27 chr13 64319145 64319476 -55425422 - L1MA9 LINE L1 -139 6050 5823 2475 162 70 34 chr13 64319613 64320088 -55424810 - MER21A LTR ERV1 -6 925 434 1112 159 10 20 chr13 64320091 64320292 -55424606 - MER21A LTR ERV1 -719 212 14 1079 245 34 63 chr13 64321232 64321611 -55423287 - MLT1A2 LTR MaLR -4 370 3 234 91 0 0 chr13 64321698 64321731 -55423167 + (A)n Simple_repeat Simple_repeat 1 33 0 2836 166 87 4 chr13 64321733 64322276 -55422622 - LTR49 LTR ERV1 -2 593 6 23 33 0 0 chr13 64322395 64322425 -55422473 + AT_rich Low_complexity Low_complexity 1 30 0 4483 192 40 10 chr13 64323043 64323956 -55420942 - L1MC2 LINE L1 -32 6312 5372 29 0 0 0 chr13 64324148 64324177 -55420721 + AT_rich Low_complexity Low_complexity 1 29 0 1728 158 61 21 chr13 64324344 64324673 -55420225 - MER61A LTR ERV1 0 343 2 16348 106 27 11 chr13 64324674 64327100 -55417798 - MER61A-int LTR ERV1 0 5217 2753 210 200 0 20 chr13 64327332 64327382 -55417516 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 291 54 0 0 chr13 64328764 64328801 -55416097 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1204 169 103 149 chr13 64328871 64329326 -55415572 - LTR23 LTR ERV1 0 437 4 399 399 20 10 chr13 64329395 64329598 -55415300 + L1MEc LINE L1 382 586 -6021 3676 145 100 15 chr13 64330153 64330815 -55414083 - LTR62 LTR ERVK -1 718 1 454 294 86 50 chr13 64330979 64331507 -55413391 + L1MEc LINE L1 1117 1654 -4772 1812 122 32 25 chr13 64331519 64331798 -55413100 + AluSx SINE Alu 1 281 -31 233 241 127 0 chr13 64331802 64331881 -55413017 + L1MC4 LINE L1 6614 6702 -1340 305 325 71 19 chr13 64331889 64332043 -55412855 + L1MEc LINE L1 1870 2031 -4576 858 328 169 26 chr13 64332079 64332710 -55412188 - L2 LINE L2 -206 3107 2369 1141 292 62 46 chr13 64332725 64333221 -55411677 - LTR33 LTR ERVL -17 504 1 1344 260 47 64 chr13 64333238 64333274 -55411624 - MLT2B1 LTR ERVL -7 513 478 432 0 0 0 chr13 64333274 64333322 -55411576 + (CA)n Simple_repeat Simple_repeat 2 49 0 1344 260 47 64 chr13 64333322 64333800 -55411098 - MLT2B1 LTR ERVL -42 478 8 602 354 120 6 chr13 64333842 64334184 -55410714 - L2 LINE L2 -1035 2279 1899 961 139 0 0 chr13 64334289 64334433 -55410465 - AluJb SINE Alu -1 311 168 2258 143 37 3 chr13 64334452 64334803 -55410095 - THE1B LTR MaLR 0 364 2 21 36 0 0 chr13 64335207 64335235 -55409663 + AT_rich Low_complexity Low_complexity 1 28 0 592 158 30 0 chr13 64335726 64335827 -55409071 + MER45A DNA AcHobo 75 178 0 358 309 155 18 chr13 64336071 64336407 -55408491 - L2 LINE L2 -895 2419 2038 306 0 0 0 chr13 64337980 64338014 -55406884 + (TA)n Simple_repeat Simple_repeat 2 35 0 331 273 71 7 chr13 64338801 64338955 -55405943 + MER103 DNA DNA 1 164 -2 204 125 0 0 chr13 64339185 64339217 -55405681 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr13 64339902 64339924 -55404974 + AT_rich Low_complexity Low_complexity 1 22 0 1761 133 4 0 chr13 64340562 64340825 -55404073 + AluSg SINE Alu 47 310 0 405 326 7 0 chr13 64341847 64341988 -55402910 + MER69A DNA AcHobo 1 142 -35 2738 102 0 0 chr13 64342844 64343236 -55401662 - L1PA13 LINE L1 0 6163 5772 25 75 0 0 chr13 64343377 64343430 -55401468 + AT_rich Low_complexity Low_complexity 1 53 0 5615 163 16 2 chr13 64343511 64345116 -55399782 - L1PB2 LINE L1 -2 6149 4518 2238 179 9 42 chr13 64345246 64345694 -55399204 - Tigger2a DNA MER2_type 0 434 2 333 47 0 0 chr13 64345695 64345738 -55399160 + (TG)n Simple_repeat Simple_repeat 2 44 0 1304 265 54 68 chr13 64346327 64346844 -55398054 + MER67D LTR ERV1 2 511 -3 23 33 0 0 chr13 64347088 64347118 -55397780 + AT_rich Low_complexity Low_complexity 1 30 0 521 323 37 71 chr13 64347447 64347803 -55397095 - MLT1K LTR MaLR -75 513 173 489 16 0 0 chr13 64347803 64347864 -55397034 - L1PA3 LINE L1 -3 6152 6092 521 323 37 71 chr13 64347864 64347941 -55396957 - MLT1K LTR MaLR -415 173 95 26 0 0 0 chr13 64348196 64348222 -55396676 + AT_rich Low_complexity Low_complexity 1 26 0 231 264 28 14 chr13 64348355 64348427 -55396471 - L2 LINE L2 -78 3235 3163 241 217 36 24 chr13 64348882 64348965 -55395933 + CT-rich Low_complexity Low_complexity 1 84 0 21 57 0 0 chr13 64349584 64349619 -55395279 + AT_rich Low_complexity Low_complexity 1 35 0 2751 192 70 40 chr13 64350462 64351133 -55393765 + MER67C LTR ERV1 3 693 -17 219 364 32 88 chr13 64351656 64351939 -55392959 + L3 LINE CR1 919 1185 -392 2816 218 40 65 chr13 64352847 64353799 -55391099 - MER21A LTR ERV1 -18 913 49 25 31 0 0 chr13 64353799 64353831 -55391067 + AT_rich Low_complexity Low_complexity 1 32 0 260 331 124 31 chr13 64355616 64355873 -55389025 + L3 LINE CR1 624 904 -673 634 245 43 27 chr13 64355929 64356117 -55388781 + MER58A DNA MER1_type 33 223 -1 180 172 0 0 chr13 64356424 64356453 -55388445 + L2 LINE L2 3242 3270 -2 8012 217 49 62 chr13 64357071 64357751 -55387147 + L1M1 LINE L1 12 699 -6866 216 0 0 0 chr13 64357751 64357775 -55387123 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8012 217 49 62 chr13 64357775 64361301 -55383597 + L1M1 LINE L1 699 4857 -2708 3659 43 0 13 chr13 64361301 64361761 -55383137 + L1PA4 LINE L1 5699 6152 -3 8012 217 49 62 chr13 64361761 64361775 -55383123 + L1M1 LINE L1 4857 4870 -2695 753 138 0 0 chr13 64361827 64361950 -55382948 + L1P LINE L1 5209 5331 -815 3365 217 61 12 chr13 64361950 64362806 -55382092 - L1MC3 LINE L1 -917 6868 5971 483 253 31 37 chr13 64362810 64362972 -55381926 + LTR40b LTR ERVL 300 460 -2 1352 273 57 40 chr13 64363416 64364017 -55380881 - L1MC4 LINE L1 -331 7711 7101 25 31 0 0 chr13 64364122 64364154 -55380744 + AT_rich Low_complexity Low_complexity 1 32 0 1090 204 0 32 chr13 64364735 64364951 -55379947 + AluJb SINE Alu 84 292 -20 1693 246 50 27 chr13 64365211 64365727 -55379171 + LTR38 LTR ERV1 18 545 -11 22 0 0 0 chr13 64366205 64366227 -55378671 + AT_rich Low_complexity Low_complexity 1 22 0 35 54 0 0 chr13 64366389 64366445 -55378453 + AT_rich Low_complexity Low_complexity 1 56 0 1040 225 47 70 chr13 64366532 64366830 -55378068 - AluJo SINE Alu -15 297 7 23 54 0 0 chr13 64366851 64366888 -55378010 + AT_rich Low_complexity Low_complexity 1 37 0 302 294 81 44 chr13 64367556 64367692 -55377206 + MIR3 SINE MIR 6 146 -62 39 50 0 0 chr13 64368290 64368350 -55376548 + AT_rich Low_complexity Low_complexity 1 60 0 27 0 0 0 chr13 64369008 64369035 -55375863 + AT_rich Low_complexity Low_complexity 1 27 0 955 216 94 37 chr13 64369670 64370021 -55374877 - MER39 LTR ERV1 -1 706 336 260 370 181 8 chr13 64370517 64370644 -55374254 - MER91A DNA MER1_type -29 167 19 317 274 110 27 chr13 64370724 64370870 -55374028 - MIR SINE MIR -31 231 74 2128 108 7 10 chr13 64371342 64371648 -55373250 + AluSc SINE Alu 2 306 -3 31 26 0 0 chr13 64373153 64373191 -55371707 + AT_rich Low_complexity Low_complexity 1 38 0 38 103 0 0 chr13 64373382 64373518 -55371380 + AT_rich Low_complexity Low_complexity 1 136 0 12279 131 7 9 chr13 64374293 64376303 -55368595 - L1PA8A LINE L1 -1285 4861 2858 3967 98 11 2 chr13 64376304 64377235 -55367663 + L1PA8A LINE L1 4848 5788 -343 1234 152 0 0 chr13 64377232 64377423 -55367475 + L1PA8A LINE L1 590 780 -5095 * 521 145 0 26 chr13 64377421 64377521 -55367377 + L1PA8A LINE L1 3394 3492 -2969 * 2363 127 28 5 chr13 64377521 64377887 -55367011 + L1PA8A LINE L1 6038 6433 -13 521 145 0 26 chr13 64377887 64377903 -55366995 + L1PA8A LINE L1 3492 3507 -2954 930 310 93 44 chr13 64377928 64378628 -55366270 + L1MEc LINE L1 499 1289 -5107 441 0 0 0 chr13 64378628 64378677 -55366221 + (CA)n Simple_repeat Simple_repeat 2 50 0 930 310 93 44 chr13 64378677 64379236 -55365662 + L1MEc LINE L1 1289 1819 -4577 186 0 88 0 chr13 64380157 64380191 -55364707 + A-rich Low_complexity Low_complexity 2 38 0 276 30 0 0 chr13 64380469 64380502 -55364396 + (TG)n Simple_repeat Simple_repeat 2 34 0 229 286 88 66 chr13 64380655 64381019 -55363879 + L1MEc LINE L1 1448 1819 -4577 180 331 110 15 chr13 64381663 64381799 -55363099 - L2 LINE L2 -2 3311 3163 186 0 88 0 chr13 64381937 64381971 -55362927 + A-rich Low_complexity Low_complexity 2 38 0 255 61 0 0 chr13 64382249 64382282 -55362616 + (TG)n Simple_repeat Simple_repeat 2 34 0 941 348 47 19 chr13 64382298 64382726 -55362172 + LTR16B LTR ERVL 25 464 0 418 294 233 0 chr13 64384352 64384498 -55360400 - MER5A DNA MER1_type 0 189 10 26 30 0 0 chr13 64384617 64384650 -55360248 + AT_rich Low_complexity Low_complexity 1 33 0 237 65 0 0 chr13 64385094 64385125 -55359773 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1657 189 3 10 chr13 64385134 64385440 -55359458 + AluJb SINE Alu 1 304 -8 24 32 0 0 chr13 64386325 64386356 -55358542 + AT_rich Low_complexity Low_complexity 1 31 0 306 73 0 0 chr13 64387314 64387355 -55357543 + (TG)n Simple_repeat Simple_repeat 2 42 0 328 304 110 46 chr13 64387455 64387718 -55357180 - L1MC/D LINE L1 -794 5539 5260 21 57 0 0 chr13 64388241 64388276 -55356622 + AT_rich Low_complexity Low_complexity 1 35 0 1025 209 100 4 chr13 64388913 64389162 -55355736 + AluSx SINE Alu 3 275 -37 580 93 21 10 chr13 64389232 64389329 -55355569 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 661 267 24 0 chr13 64390042 64390207 -55354691 - MER45A DNA AcHobo 0 178 10 264 277 170 19 chr13 64392978 64393137 -55351761 + L1ME3A LINE L1 5986 6168 -2 351 130 0 7 chr13 64393147 64393216 -55351682 + Alu SINE Alu 1 52 -248 1426 88 0 5 chr13 64393216 64393408 -55351490 + AluSg/x SINE Alu 116 306 -6 229 147 0 0 chr13 64395065 64395099 -55349799 - Alu SINE Alu -268 34 1 13033 162 27 21 chr13 64395099 64397457 -55347441 - Tigger1 DNA MER2_type -47 2371 1 183 156 0 0 chr13 64397457 64397489 -55347409 + (TA)n Simple_repeat Simple_repeat 1 32 0 1569 220 33 0 chr13 64397491 64397827 -55347071 - MER7A DNA MER2_type 0 346 2 297 0 0 0 chr13 64397828 64397861 -55347037 + (TG)n Simple_repeat Simple_repeat 2 34 0 3224 27 0 0 chr13 64398943 64399316 -55345582 - L1PA4 LINE L1 -295 5860 5488 2034 39 15 4 chr13 64399316 64399576 -55345322 + L1PA4 LINE L1 5890 6152 -3 1095 159 42 17 chr13 64399859 64400098 -55344800 - L1MA8 LINE L1 0 6291 6047 2503 62 0 0 chr13 64402002 64402311 -55342587 - AluY SINE Alu 0 311 3 623 319 21 25 chr13 64402338 64402573 -55342325 + MIR SINE MIR 3 236 -26 21 0 0 0 chr13 64405652 64405673 -55339225 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr13 64405708 64405743 -55339155 + AT_rich Low_complexity Low_complexity 1 35 0 220 184 0 0 chr13 64405892 64405930 -55338968 + (CA)n Simple_repeat Simple_repeat 1 38 0 2056 234 80 37 chr13 64406163 64406912 -55337986 - L1ME1 LINE L1 -3 6163 5383 280 178 6 0 chr13 64406987 64407057 -55337841 + L1MA7 LINE L1 6229 6291 0 294 29 0 0 chr13 64409225 64409260 -55335638 + (TG)n Simple_repeat Simple_repeat 2 36 0 1811 237 44 31 chr13 64409262 64409714 -55335184 - MLT2B1 LTR ERVL -62 458 1 337 246 82 33 chr13 64409786 64409908 -55334990 + MIR SINE MIR 97 224 -38 840 254 90 20 chr13 64409928 64410172 -55334726 + L1MB8 LINE L1 20 280 -6579 1537 162 36 43 chr13 64410310 64410612 -55334286 - AluJo SINE Alu -10 302 3 23 0 0 0 chr13 64410615 64410638 -55334260 + AT_rich Low_complexity Low_complexity 1 23 0 759 263 136 22 chr13 64410671 64411323 -55333575 + L1MB8 LINE L1 4006 5213 -1744 * 3324 223 43 19 chr13 64411320 64412182 -55332716 + L1MB8 LINE L1 6107 6989 0 625 241 92 100 chr13 64414297 64414845 -55330053 + L1MC5 LINE L1 6846 7390 -571 1428 149 164 8 chr13 64414845 64415113 -55329785 + AluSx SINE Alu 1 310 -2 625 241 92 100 chr13 64415113 64415196 -55329702 + L1MC5 LINE L1 7390 7472 -489 972 160 18 102 chr13 64415286 64415465 -55329433 - Tigger7 DNA MER2_type -1 2490 2340 1762 168 3 3 chr13 64415465 64415763 -55329135 + AluSx SINE Alu 7 304 -8 972 160 18 102 chr13 64415763 64415858 -55329040 - Tigger7 DNA MER2_type -151 2340 2239 * 3369 172 25 13 chr13 64415857 64416461 -55328437 - Tigger7 DNA MER2_type -115 618 8 373 162 88 15 chr13 64416676 64416744 -55328154 + Tigger2a DNA MER2_type 1 73 -361 557 265 22 7 chr13 64416775 64416911 -55327987 - MER8 DNA MER2_type -62 177 40 517 306 102 17 chr13 64419302 64419723 -55325175 + L1MEc LINE L1 1770 2226 -4170 882 213 0 18 chr13 64419996 64420160 -55324738 + FRAM SINE Alu 1 161 -5 370 365 67 35 chr13 64420481 64420961 -55323937 + ERVL LTR ERVL 2232 2726 -3038 396 372 56 4 chr13 64421147 64421416 -55323482 + ERVL LTR ERVL 3016 3298 -2466 22 35 0 0 chr13 64422816 64422845 -55322053 + AT_rich Low_complexity Low_complexity 1 29 0 393 261 54 60 chr13 64423848 64424032 -55320866 + L2 LINE L2 3131 3313 0 5694 221 30 35 chr13 64424464 64425955 -55318943 - L1MC3 LINE L1 -356 7429 5947 23 0 0 0 chr13 64425964 64425987 -55318911 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 49 chr13 64426276 64426292 -55318606 + AT_rich Low_complexity Low_complexity 1 16 -23 1443 211 7 14 chr13 64426292 64426581 -55318317 + AluJo SINE Alu 1 287 -25 26 0 0 49 chr13 64426581 64426605 -55318293 + AT_rich Low_complexity Low_complexity 16 39 0 450 0 0 0 chr13 64428119 64428169 -55316729 + (TA)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chr13 64428205 64428229 -55316669 + AT_rich Low_complexity Low_complexity 1 24 0 634 239 65 0 chr13 64428342 64428497 -55316401 + L1PB4 LINE L1 5992 6156 0 760 272 12 41 chr13 64430192 64430438 -55314460 + L2 LINE L2 2304 2542 -772 602 193 22 176 chr13 64430438 64430795 -55314103 + L1MC4 LINE L1 7739 8040 -2 840 287 34 47 chr13 64430849 64431170 -55313728 + L2 LINE L2 2531 2847 -467 22 35 0 0 chr13 64431918 64431947 -55312951 + AT_rich Low_complexity Low_complexity 1 29 0 342 147 0 0 chr13 64433256 64433324 -55311574 + (GA)n Simple_repeat Simple_repeat 2 69 0 2185 117 0 0 chr13 64434965 64435256 -55309642 - AluSg SINE Alu -19 291 1 681 126 31 47 chr13 64435260 64435387 -55309511 - AluSg SINE Alu -185 125 1 1712 116 0 0 chr13 64435389 64435621 -55309277 - AluSc SINE Alu -17 292 61 41 36 0 0 chr13 64436185 64436240 -55308658 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr13 64436319 64436343 -55308555 + AT_rich Low_complexity Low_complexity 1 24 0 811 322 66 50 chr13 64437339 64438218 -55306680 - MER45C DNA AcHobo -27 926 1 281 227 13 0 chr13 64438228 64438303 -55306595 + CT-rich Low_complexity Low_complexity 1 76 0 903 161 0 0 chr13 64439159 64439296 -55305602 - FRAM SINE Alu -19 157 21 203 193 35 0 chr13 64439778 64439835 -55305063 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 217 286 0 0 chr13 64440556 64440605 -55304293 + L2 LINE L2 3265 3313 0 3587 124 50 98 chr13 64441511 64442335 -55302563 + LTR1 LTR ERV1 2 785 0 239 326 72 33 chr13 64442341 64442522 -55302376 - LTR33 LTR ERVL -8 513 326 381 341 47 28 chr13 64442650 64442861 -55302037 - LTR33 LTR ERVL -297 224 10 238 283 25 50 chr13 64443115 64443235 -55301663 - LTR16A1 LTR ERVL -8 449 333 280 253 140 77 chr13 64444248 64444303 -55300595 - L1ME LINE L1 -451 5670 5620 2196 104 0 3 chr13 64444303 64444600 -55300298 - AluSx SINE Alu -16 296 1 280 253 140 77 chr13 64444600 64444844 -55300054 - L1ME LINE L1 -501 5620 5352 1890 185 27 0 chr13 64445798 64446128 -55298770 + MER2 DNA MER2_type 7 345 0 589 223 25 13 chr13 64446294 64446451 -55298447 - LTR67 LTR ERVL -1 556 398 277 333 67 17 chr13 64446873 64446993 -55297905 - MIR SINE MIR -89 173 48 21 0 0 0 chr13 64447342 64447363 -55297535 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 64448044 64448065 -55296833 + AT_rich Low_complexity Low_complexity 1 21 0 277 314 0 0 chr13 64448307 64448393 -55296505 + L2 LINE L2 3222 3307 -6 2123 119 0 3 chr13 64448447 64448742 -55296156 + AluSg SINE Alu 1 294 -16 350 221 61 61 chr13 64451519 64451746 -55293152 - MLT1D LTR MaLR -227 240 12 21 0 0 0 chr13 64452643 64452664 -55292234 + AT_rich Low_complexity Low_complexity 1 21 0 192 297 187 26 chr13 64453440 64453595 -55291303 - MIR SINE MIR -4 258 79 324 0 0 0 chr13 64454007 64454043 -55290855 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr13 64454395 64454423 -55290475 + AT_rich Low_complexity Low_complexity 1 28 0 180 234 0 0 chr13 64454895 64454942 -55289956 + (TG)n Simple_repeat Simple_repeat 1 47 0 1736 137 0 0 chr13 64455185 64455440 -55289458 + AluSq SINE Alu 49 303 -10 483 245 17 56 chr13 64456256 64456431 -55288467 + MER5A DNA MER1_type 8 166 -12 1901 136 35 0 chr13 64456815 64457101 -55287797 + AluSg SINE Alu 1 296 -14 399 145 0 53 chr13 64457121 64457197 -55287701 + FLAM_A SINE Alu 56 127 -6 483 256 94 34 chr13 64457903 64458137 -55286761 + L1M4 LINE L1 3952 4199 -1947 312 299 8 39 chr13 64458138 64458265 -55286633 + L1MEc LINE L1 2134 2256 -4140 1725 179 112 32 chr13 64458373 64458775 -55286123 - Tigger2a DNA MER2_type 0 434 1 1340 230 58 27 chr13 64459178 64459289 -55285609 - L1MA9 LINE L1 -33 6156 6050 432 0 0 0 chr13 64459289 64459337 -55285561 + (TG)n Simple_repeat Simple_repeat 2 49 0 1340 230 58 27 chr13 64459337 64459668 -55285230 - L1MA9 LINE L1 -139 6050 5823 2473 159 70 34 chr13 64459805 64460276 -55284622 - MER21A LTR ERV1 -6 925 438 1112 159 10 20 chr13 64460283 64460484 -55284414 - MER21A LTR ERV1 -719 212 14 1076 249 29 65 chr13 64461424 64461806 -55283092 - MLT1A2 LTR MaLR -4 370 3 234 91 0 0 chr13 64461893 64461926 -55282972 + (A)n Simple_repeat Simple_repeat 1 33 0 2801 169 87 4 chr13 64461928 64462471 -55282427 - LTR49 LTR ERV1 -2 593 6 23 33 0 0 chr13 64462590 64462620 -55282278 + AT_rich Low_complexity Low_complexity 1 30 0 231 213 21 0 chr13 64462623 64462670 -55282228 - LTR67 LTR ERVL -14 543 496 4501 191 40 10 chr13 64463238 64464151 -55280747 - L1MC2 LINE L1 -32 6312 5372 29 0 0 0 chr13 64464343 64464372 -55280526 + AT_rich Low_complexity Low_complexity 1 29 0 1728 158 61 21 chr13 64464539 64464868 -55280030 - MER61A LTR ERV1 0 343 2 16348 106 27 11 chr13 64464869 64467295 -55277603 - MER61A-int LTR ERV1 0 5217 2753 210 200 0 20 chr13 64467527 64467577 -55277321 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 399 41 0 0 chr13 64468959 64469008 -55275890 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 1215 163 103 149 chr13 64469078 64469533 -55275365 - LTR23 LTR ERV1 0 437 4 399 399 20 10 chr13 64469602 64469805 -55275093 + L1MEc LINE L1 382 586 -6021 3662 147 100 15 chr13 64470360 64471022 -55273876 - LTR62 LTR ERVK -1 718 1 444 297 86 50 chr13 64471186 64471714 -55273184 + L1MEc LINE L1 1117 1654 -4772 1812 122 32 25 chr13 64471726 64472005 -55272893 + AluSx SINE Alu 1 281 -31 233 241 127 0 chr13 64472009 64472088 -55272810 + L1MC4 LINE L1 6614 6702 -1340 305 325 71 19 chr13 64472098 64472252 -55272646 + L1MEc LINE L1 1870 2031 -4576 858 328 169 26 chr13 64472288 64472919 -55271979 - L2 LINE L2 -206 3107 2369 1141 292 62 46 chr13 64472934 64473430 -55271468 - LTR33 LTR ERVL -17 504 1 1344 260 47 64 chr13 64473447 64473483 -55271415 - MLT2B1 LTR ERVL -7 513 478 306 0 0 0 chr13 64473483 64473517 -55271381 + (CA)n Simple_repeat Simple_repeat 2 35 0 1344 260 47 64 chr13 64473517 64473995 -55270903 - MLT2B1 LTR ERVL -42 478 8 587 357 120 6 chr13 64474037 64474379 -55270519 - L2 LINE L2 -1035 2279 1899 946 145 0 0 chr13 64474488 64474633 -55270265 - AluJb SINE Alu 0 312 168 2272 140 37 3 chr13 64474652 64475003 -55269895 - THE1B LTR MaLR 0 364 2 21 36 0 0 chr13 64475407 64475435 -55269463 + AT_rich Low_complexity Low_complexity 1 28 0 961 43 0 0 chr13 64476760 64476877 -55268021 + L1PA3 LINE L1 6036 6152 -3 33 0 0 0 chr13 64476877 64476910 -55267988 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 64477148 64477177 -55267721 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr13 64477343 64477380 -55267518 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr13 64477406 64477451 -55267447 + AT_rich Low_complexity Low_complexity 1 45 0 50 42 0 0 chr13 64478444 64478515 -55266383 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr13 64478638 64478659 -55266239 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 64478976 64478998 -55265900 + AT_rich Low_complexity Low_complexity 1 22 0 332 261 59 17 chr13 64479715 64479834 -55265064 + MIR SINE MIR 118 241 -21 26 0 0 0 chr13 64480321 64480347 -55264551 + AT_rich Low_complexity Low_complexity 1 26 0 209 302 30 112 chr13 64480946 64481016 -55263882 + L2 LINE L2 7 81 -3233 258 81 0 0 chr13 64481016 64481053 -55263845 + (CA)n Simple_repeat Simple_repeat 1 37 0 209 302 30 112 chr13 64481053 64481151 -55263747 + L2 LINE L2 81 161 -3153 21 0 0 0 chr13 64481690 64481711 -55263187 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr13 64482636 64482670 -55262228 + AT_rich Low_complexity Low_complexity 1 34 0 311 275 12 39 chr13 64482725 64482846 -55262052 + MIR SINE MIR 34 153 -70 36 0 0 0 chr13 64482846 64482882 -55262016 + AT_rich Low_complexity Low_complexity 1 36 0 236 277 113 51 chr13 64483188 64483383 -55261515 + LTR67 LTR ERVL 351 557 0 1586 249 35 45 chr13 64483548 64484058 -55260840 - MLT1D LTR MaLR 0 505 1 186 43 0 0 chr13 64484083 64484106 -55260792 + (TATG)n Simple_repeat Simple_repeat 4 26 0 24 91 0 0 chr13 64485100 64485166 -55259732 + AT_rich Low_complexity Low_complexity 1 66 0 584 99 6 56 chr13 64486321 64486482 -55258416 + (TA)n Simple_repeat Simple_repeat 2 154 0 232 239 0 0 chr13 64486743 64486789 -55258109 + L2 LINE L2 3264 3309 -4 195 129 0 0 chr13 64487018 64487049 -55257849 + (TA)n Simple_repeat Simple_repeat 1 31 0 4285 199 7 22 chr13 64487190 64488021 -55256877 - MER52A LTR ERV1 0 1755 937 1093 228 24 63 chr13 64488028 64488361 -55256537 - MER52A LTR ERV1 -1435 320 1 578 147 42 0 chr13 64488385 64488480 -55256418 - MER52A-int LTR ERV1 -58 7033 6935 2229 82 10 0 chr13 64488559 64488850 -55256048 - AluSx SINE Alu -18 294 1 423 173 0 0 chr13 64488865 64488940 -55255958 - MER50-int LTR ERV1 -5454 1751 1677 433 227 17 25 chr13 64488941 64489063 -55255835 - MER52A LTR ERV1 -647 1108 918 2142 95 9 1 chr13 64489063 64489476 -55255422 - pTR5 LTR ERV1 -2062 376 66 288 237 31 10 chr13 64489476 64489573 -55255325 - LTR30 LTR ERV1 -80 642 544 2888 130 104 39 chr13 64489573 64490328 -55254570 - pTR5 LTR ERV1 -413 2025 743 2584 207 64 65 chr13 64490330 64491294 -55253604 - MER52A LTR ERV1 -681 1074 1 1780 124 67 0 chr13 64492130 64492412 -55252486 - AluSx SINE Alu -11 301 1 265 302 12 0 chr13 64492626 64492712 -55252186 + L1ME3A LINE L1 6035 6121 -49 23 33 0 0 chr13 64492717 64492747 -55252151 + AT_rich Low_complexity Low_complexity 1 30 0 1170 157 5 10 chr13 64492816 64493013 -55251885 - L1MC1 LINE L1 0 6333 6138 3837 169 24 11 chr13 64493015 64493730 -55251168 - L1MC1 LINE L1 -236 6097 5374 4748 183 28 23 chr13 64493741 64495488 -55249410 - L1PA16 LINE L1 -10 6156 4397 3879 225 19 28 chr13 64495502 64496523 -55248375 + L1 LINE L1 3316 4326 -1820 4091 256 37 33 chr13 64496551 64498049 -55246849 - L1MC1 LINE L1 -760 5386 3883 230 324 88 24 chr13 64498245 64498495 -55246403 + HAL1 LINE L1 104 369 -2138 2259 81 0 0 chr13 64498671 64498954 -55245944 + AluSg SINE Alu 1 283 -27 297 0 0 0 chr13 64498968 64499001 -55245897 + (CAT)n Simple_repeat Simple_repeat 2 34 0 723 119 0 0 chr13 64499971 64500097 -55244801 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 202 164 73 0 chr13 64501083 64501138 -55243760 + (TA)n Simple_repeat Simple_repeat 2 60 0 654 312 60 45 chr13 64502605 64502986 -55241912 + MLT1J2 LTR MaLR 21 407 -43 437 352 44 0 chr13 64503264 64503423 -55241475 + MIR3 SINE MIR 40 205 -3 2175 148 8 13 chr13 64503540 64503917 -55240981 - THE1C LTR MaLR 0 375 1 347 321 80 61 chr13 64503990 64504202 -55240696 + MIR SINE MIR 4 219 -43 25 31 0 0 chr13 64504235 64504267 -55240631 + AT_rich Low_complexity Low_complexity 1 32 0 284 312 67 7 chr13 64504298 64504436 -55240462 + MIR3 SINE MIR 44 191 -17 38 51 0 0 chr13 64504588 64504647 -55240251 + AT_rich Low_complexity Low_complexity 1 59 0 27 0 0 0 chr13 64505352 64505379 -55239519 + AT_rich Low_complexity Low_complexity 1 27 0 614 330 191 7 chr13 64507225 64507750 -55237148 - L2 LINE L2 -65 3248 2606 1985 139 0 0 chr13 64507823 64508124 -55236774 + AluSx SINE Alu 5 305 -7 571 272 36 92 chr13 64508181 64508486 -55236412 - L2 LINE L2 -680 2634 2347 2171 114 3 0 chr13 64508622 64508928 -55235970 + AluSq SINE Alu 1 307 -6 372 22 0 0 chr13 64508941 64508986 -55235912 + (TG)n Simple_repeat Simple_repeat 2 46 0 246 62 0 0 chr13 64508985 64509017 -55235881 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 2222 123 0 0 chr13 64509829 64510137 -55234761 - AluSx SINE Alu -4 308 1 26 50 0 0 chr13 64510225 64510265 -55234633 + AT_rich Low_complexity Low_complexity 1 40 0 317 258 59 81 chr13 64510942 64511163 -55233735 + L2 LINE L2 1632 1847 -1467 347 252 180 24 chr13 64511303 64511509 -55233389 - L1ME LINE L1 -322 5799 5562 1067 169 22 0 chr13 64512284 64512467 -55232431 + MER76 LTR ERV 1 187 -501 1832 144 0 11 chr13 64513397 64513710 -55231188 - AluSx SINE Alu 0 312 3 1901 190 40 31 chr13 64514887 64515431 -55229467 + MLT2A1 LTR ERVL 1 554 0 25 20 0 59 chr13 64516935 64516986 -55227912 + AT_rich Low_complexity Low_complexity 1 48 0 249 286 48 0 chr13 64517846 64517930 -55226968 + MLT1L LTR MaLR 111 198 -417 30 27 0 0 chr13 64518916 64518953 -55225945 + AT_rich Low_complexity Low_complexity 1 37 0 376 350 145 14 chr13 64519201 64519490 -55225408 - L2 LINE L2 -5 3267 2941 362 78 0 0 chr13 64519578 64519629 -55225269 + MADE1 DNA Mariner 1 51 -29 5565 35 3 0 chr13 64519935 64520602 -55224296 + L1PA4 LINE L1 5484 6152 -3 26 30 0 0 chr13 64520604 64520637 -55224261 + AT_rich Low_complexity Low_complexity 1 33 0 349 23 0 0 chr13 64520637 64520681 -55224217 - MADE1 DNA Mariner -36 44 1 22 56 0 0 chr13 64521354 64521390 -55223508 + AT_rich Low_complexity Low_complexity 1 36 0 329 186 57 0 chr13 64521391 64521461 -55223437 + L1MA9 LINE L1 6237 6310 -2 456 19 0 0 chr13 64523508 64523561 -55221337 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 411 38 0 0 chr13 64523992 64524045 -55220853 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr13 64525800 64525822 -55219076 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 64526754 64526775 -55218123 + AT_rich Low_complexity Low_complexity 1 21 0 708 94 9 0 chr13 64527045 64527151 -55217747 - AluSg/x SINE Alu -7 303 197 38773 77 8 10 chr13 64527164 64531502 -55213396 - L1PA5 LINE L1 -3 6151 1832 4376 62 0 12 chr13 64531502 64532066 -55212832 + L1PA5 LINE L1 5587 6143 -11 38773 77 8 10 chr13 64532066 64533892 -55211006 - L1PA5 LINE L1 -4322 1832 3 23 0 0 0 chr13 64534125 64534148 -55210750 + AT_rich Low_complexity Low_complexity 1 23 0 1807 260 47 25 chr13 64534533 64535279 -55209619 - L1M4 LINE L1 -2834 3312 2551 267 81 103 11 chr13 64535287 64535374 -55209524 + A-rich Low_complexity Low_complexity 1 95 0 903 273 55 66 chr13 64536285 64536828 -55208070 - L1ME2 LINE L1 -1 6163 5627 935 279 50 30 chr13 64536836 64537334 -55207564 - L1ME2 LINE L1 -784 5362 4855 27 73 0 0 chr13 64538163 64538218 -55206680 + AT_rich Low_complexity Low_complexity 1 55 0 1202 290 104 25 chr13 64538568 64539133 -55205765 + HsTC2c DNA Tc2 120 729 0 265 361 65 0 chr13 64539511 64539619 -55205279 + L2 LINE L2 3169 3283 -30 189 339 144 0 chr13 64540231 64540349 -55204549 + MIR SINE MIR 72 206 -56 41 21 0 0 chr13 64540657 64540705 -55204193 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr13 64540890 64540919 -55203979 + AT_rich Low_complexity Low_complexity 1 29 0 15000 194 45 20 chr13 64542430 64545573 -55199325 + L1MA2 LINE L1 16 2869 -4696 1868 179 0 0 chr13 64545573 64545874 -55199024 + AluSx SINE Alu 1 301 -11 15000 194 45 20 chr13 64545874 64546061 -55198837 + L1MA2 LINE L1 2869 3050 -4515 4662 212 11 51 chr13 64546073 64547344 -55197554 - L1PB1 LINE L1 -2787 3359 2140 * 7917 196 17 18 chr13 64547341 64549731 -55195167 + L1PB1 LINE L1 3386 5771 -380 237 167 45 0 chr13 64549798 64549864 -55195034 - L1MC4 LINE L1 -1350 6692 6624 2210 137 8 6 chr13 64549865 64550231 -55194667 + L1PB1 LINE L1 5782 6148 -3 2947 189 63 25 chr13 64550243 64551461 -55193437 + L1MA2 LINE L1 3032 4279 -3286 * 10602 208 36 20 chr13 64551454 64551997 -55192901 + L1PB1 LINE L1 2384 2917 -3234 1908 132 3 17 chr13 64551997 64552293 -55192605 + AluSq SINE Alu 1 292 -21 10602 208 36 20 chr13 64552293 64553752 -55191146 + L1PB1 LINE L1 2917 4351 -1800 486 0 0 0 chr13 64553752 64553806 -55191092 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 10602 208 36 20 chr13 64553806 64555449 -55189449 + L1PB1 LINE L1 4351 6092 -59 1039 149 16 5 chr13 64555455 64555643 -55189255 + L1MA2 LINE L1 5984 6173 -1392 3078 123 10 12 chr13 64555643 64556154 -55188744 + L1MA2 LINE L1 7214 7723 0 192 269 0 60 chr13 64556523 64556590 -55188308 + L2 LINE L2 3251 3313 0 236 284 62 12 chr13 64556820 64556901 -55187997 - L2 LINE L2 0 3313 3229 39 50 0 0 chr13 64557980 64558040 -55186858 + AT_rich Low_complexity Low_complexity 1 60 0 300 328 11 11 chr13 64559012 64559189 -55185709 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 336 268 19 32 chr13 64559059 64559216 -55185682 + (TATATG)n Simple_repeat Simple_repeat 2 156 0 460 291 59 54 chr13 64559305 64559508 -55185390 + MIR SINE MIR 50 253 -9 21 36 0 0 chr13 64560271 64560299 -55184599 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr13 64560640 64560669 -55184229 + AT_rich Low_complexity Low_complexity 1 29 0 1659 190 24 6 chr13 64561213 64561545 -55183353 - L1MC1 LINE L1 -2 6331 5994 1936 137 13 3 chr13 64561617 64561916 -55182982 + AluSg SINE Alu 1 302 -8 317 207 37 37 chr13 64561987 64562069 -55182829 - MIR SINE MIR -110 152 71 6727 185 41 26 chr13 64562324 64564529 -55180369 - L1MA7 LINE L1 -8 6283 4040 4506 94 2 0 chr13 64564529 64565132 -55179766 - L1PA8A LINE L1 -2 6129 5526 6727 185 41 26 chr13 64565132 64565498 -55179400 - L1MA7 LINE L1 -2251 4040 3681 34 0 0 0 chr13 64566138 64566172 -55178726 + AT_rich Low_complexity Low_complexity 1 34 0 34 42 0 0 chr13 64566349 64566397 -55178501 + AT_rich Low_complexity Low_complexity 1 48 0 504 254 14 0 chr13 64569604 64569742 -55175156 - L1PA15-16 LINE L1 -4429 2420 2281 1142 249 22 88 chr13 64570338 64570750 -55174148 - MLT1C LTR MaLR -4 463 87 318 26 0 0 chr13 64570750 64570789 -55174109 + (TG)n Simple_repeat Simple_repeat 2 40 0 1142 249 22 88 chr13 64570789 64570867 -55174031 - MLT1C LTR MaLR -380 87 5 213 291 13 25 chr13 64570900 64570979 -55173919 - MIR SINE MIR -21 241 164 287 305 298 0 chr13 64570989 64571120 -55173778 + MIR SINE MIR 31 200 -62 229 357 63 37 chr13 64571245 64571545 -55173353 + L1MEc LINE L1 80 387 -6009 1422 166 24 15 chr13 64571796 64572189 -55172709 + LTR24 LTR ERV1 5 465 -2 345 248 27 60 chr13 64572363 64572499 -55172399 + L1ME2 LINE L1 6028 6160 -6 218 171 0 0 chr13 64573181 64573216 -55171682 + CT-rich Low_complexity Low_complexity 1 35 0 360 125 0 0 chr13 64573906 64573970 -55170928 + (CA)n Simple_repeat Simple_repeat 2 65 0 450 250 40 32 chr13 64574225 64574349 -55170549 - MER63 DNA MER1_type -85 751 1 208 224 52 0 chr13 64574382 64574440 -55170458 + GA-rich Low_complexity Low_complexity 5 65 0 6121 230 25 16 chr13 64574441 64577034 -55167864 - L1PA13 LINE L1 -3132 3665 1040 210 409 31 6 chr13 64577250 64577409 -55167489 + L2 LINE L2 2597 2759 -555 1584 195 3 10 chr13 64578181 64578488 -55166410 - MER66B LTR ERV1 -181 305 1 223 329 142 46 chr13 64578541 64579019 -55165879 - L2 LINE L2 -653 2661 2138 21 0 0 0 chr13 64579096 64579117 -55165781 + AT_rich Low_complexity Low_complexity 1 21 0 535 179 0 154 chr13 64579211 64579373 -55165525 - MLT2D LTR ERVL 0 414 278 * 4263 154 43 14 chr13 64579354 64580142 -55164756 - HSMAR2 DNA Mariner -479 823 13 442 282 68 7 chr13 64580184 64580472 -55164426 + L1ME1 LINE L1 5662 5990 -176 330 299 32 13 chr13 64580539 64580693 -55164205 - L1M4 LINE L1 -1018 5128 4972 369 291 74 53 chr13 64580784 64581107 -55163791 - L1M4 LINE L1 -1198 4948 4619 389 237 7 74 chr13 64581122 64581257 -55163641 - L1MB7 LINE L1 -9 6175 6050 396 156 22 33 chr13 64581267 64581357 -55163541 - L1M4 LINE L1 -1539 4607 4519 2250 153 62 78 chr13 64581897 64582320 -55162578 + MER4B LTR ERV1 1 414 -196 2639 26 0 7 chr13 64582320 64582629 -55162269 - AluY SINE Alu -4 307 1 2250 153 62 78 chr13 64582629 64582753 -55162145 + MER4B LTR ERV1 414 539 -71 32 26 0 0 chr13 64583101 64583140 -55161758 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr13 64583849 64583885 -55161013 + AT_rich Low_complexity Low_complexity 1 36 0 285 377 51 30 chr13 64584866 64585102 -55159796 - MIR SINE MIR -15 247 7 24 0 0 0 chr13 64586048 64586072 -55158826 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 64586253 64586281 -55158617 + AT_rich Low_complexity Low_complexity 1 28 0 254 280 50 10 chr13 64587469 64587569 -55157329 + L1MEc LINE L1 41 144 -6252 1580 220 76 14 chr13 64587612 64588035 -55156863 + MLT1C LTR MaLR 10 458 -9 828 337 65 13 chr13 64588042 64588425 -55156473 + L1MEc LINE L1 198 600 -5796 2792 249 47 58 chr13 64588603 64589598 -55155300 + L1MCa LINE L1 47 958 -5595 249 33 0 0 chr13 64589598 64589628 -55155270 + (CA)n Simple_repeat Simple_repeat 1 30 0 2792 249 47 58 chr13 64589628 64590366 -55154532 + L1MCa LINE L1 958 1702 -4851 * 5188 244 80 37 chr13 64590357 64590892 -55154006 + L1MC3 LINE L1 5855 6366 -1419 2549 33 3 0 chr13 64590892 64591229 -55153669 + L1PA4 LINE L1 5837 6174 0 5188 244 80 37 chr13 64591229 64592535 -55152363 + L1MC3 LINE L1 6366 7777 -8 508 275 55 13 chr13 64592544 64592780 -55152118 + L1MEc LINE L1 938 1183 -5213 248 281 48 30 chr13 64592812 64592979 -55151919 + L1MEc LINE L1 1216 1385 -4830 273 281 24 35 chr13 64592988 64593000 -55151898 + MER5A DNA MER1_type 83 94 -95 1813 146 27 0 chr13 64593000 64593294 -55151604 + AluJb SINE Alu 1 302 -10 273 281 24 35 chr13 64593294 64593378 -55151520 + MER5A DNA MER1_type 94 189 0 2448 246 69 47 chr13 64593983 64594877 -55150021 + L1MD2 LINE L1 5436 6349 -10 464 125 12 12 chr13 64595629 64595709 -55149189 - MER4E LTR ERV1 0 766 687 1463 68 5 0 chr13 64595810 64596000 -55148898 + L1PA3 LINE L1 5965 6155 0 24 67 0 0 chr13 64596640 64596685 -55148213 + AT_rich Low_complexity Low_complexity 1 45 0 788 288 60 9 chr13 64596742 64596975 -55147923 + MIR SINE MIR 1 245 -17 27 0 0 0 chr13 64597926 64597953 -55146945 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr13 64597986 64598008 -55146890 + AT_rich Low_complexity Low_complexity 1 22 0 1238 203 4 52 chr13 64598017 64598155 -55146743 + AluJo SINE Alu 1 121 -191 300 53 0 0 chr13 64598155 64598193 -55146705 + (TA)n Simple_repeat Simple_repeat 2 39 0 1238 203 4 52 chr13 64598193 64598325 -55146573 + AluJo SINE Alu 121 258 -54 227 77 0 26 chr13 64598330 64598369 -55146529 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 24 0 0 0 chr13 64598541 64598565 -55146333 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 64598602 64598625 -55146273 + AT_rich Low_complexity Low_complexity 1 23 0 404 204 61 10 chr13 64598626 64598724 -55146174 + L1PA16 LINE L1 6048 6150 -16 2295 180 51 2 chr13 64600526 64600998 -55143900 + L1MA6 LINE L1 5806 6300 0 350 0 0 0 chr13 64602179 64602220 -55142678 + L1PA3 LINE L1 5941 5981 -174 4115 68 20 2 chr13 64602324 64602879 -55142019 - L1PA7 LINE L1 -252 5902 5338 3605 100 21 5 chr13 64602876 64603444 -55141454 + L1PA7 LINE L1 4750 5326 -820 * 291 325 106 12 chr13 64604163 64604323 -55140575 + MIR SINE MIR 24 198 -64 2645 164 25 61 chr13 64604777 64605123 -55139775 + MER39B LTR ERV1 118 438 -215 2160 83 3 62 chr13 64605123 64605448 -55139450 - AluY SINE Alu -5 306 1 2645 164 25 61 chr13 64605448 64605655 -55139243 + MER39B LTR ERV1 438 651 -2 1003 309 55 26 chr13 64605705 64606217 -55138681 - ERVL LTR ERVL -874 4611 4118 1600 172 3 66 chr13 64606217 64606536 -55138362 + AluJb SINE Alu 7 305 -7 1003 309 55 26 chr13 64606536 64606638 -55138260 - ERVL LTR ERVL -1367 4118 4020 679 353 67 25 chr13 64606636 64607313 -55137585 - ERVL LTR ERVL -1804 3850 3146 * 855 302 52 3 chr13 64607342 64607633 -55137265 - ERVL LTR ERVL -2342 3312 3008 262 307 86 24 chr13 64607653 64607908 -55136990 - ERVL LTR ERVL -3006 2648 2374 272 263 35 70 chr13 64608657 64608771 -55136127 + MIR SINE MIR 30 139 -123 2115 121 3 0 chr13 64609139 64609437 -55135461 + AluSx SINE Alu 1 299 -13 381 102 0 0 chr13 64609782 64609841 -55135057 + (TC)n Simple_repeat Simple_repeat 2 60 0 195 42 0 0 chr13 64609841 64609865 -55135033 + (CA)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr13 64610336 64610373 -55134525 + AT_rich Low_complexity Low_complexity 1 37 0 278 105 0 0 chr13 64610840 64610878 -55134020 + tRNA-Phe-TTC tRNA tRNA 1 38 -38 21506 97 3 9 chr13 64611066 64614155 -55130743 - L1P LINE L1 -3074 3072 3 519 261 59 64 chr13 64614514 64614917 -55129981 - L1MC5 LINE L1 -985 6823 6495 812 164 0 0 chr13 64615053 64615169 -55129729 + FRAM SINE Alu 14 129 -47 312 27 0 0 chr13 64615171 64615185 -55129713 + (TG)n Simple_repeat Simple_repeat 1 51 0 312 27 0 0 chr13 64615185 64615222 -55129676 + (TG)n Simple_repeat Simple_repeat 2 38 0 2538 133 14 19 chr13 64615283 64615704 -55129194 - L1MC1 LINE L1 -127 6206 5788 888 302 70 48 chr13 64615729 64616415 -55128483 - L1MC4 LINE L1 -366 7676 6976 497 338 180 8 chr13 64616754 64617237 -55127661 - L2 LINE L2 -710 2604 2039 225 289 0 0 chr13 64619263 64619315 -55125583 + L2 LINE L2 3245 3296 -17 293 295 72 62 chr13 64619378 64619571 -55125327 - MIR SINE MIR -61 201 7 21 57 0 0 chr13 64620844 64620879 -55124019 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr13 64620989 64621028 -55123870 + AT_rich Low_complexity Low_complexity 1 39 0 221 177 0 48 chr13 64621317 64621379 -55123519 + T-rich Low_complexity Low_complexity 2 60 0 2943 120 7 4 chr13 64621753 64622212 -55122686 - L1PA11 LINE L1 0 6174 5715 16143 60 7 1 chr13 64622445 64625359 -55119539 + L1PA5 LINE L1 3194 6152 -2 2295 218 54 81 chr13 64625881 64626867 -55118031 - MER52A LTR ERV1 -4 1751 654 305 269 0 15 chr13 64627848 64627915 -55116983 - MER2 DNA MER2_type 0 345 280 207 375 83 21 chr13 64628120 64628264 -55116634 - MIR SINE MIR -92 170 18 247 327 45 71 chr13 64629777 64630046 -55114852 + L2 LINE L2 109 370 -2944 25 0 0 0 chr13 64630774 64630799 -55114099 + AT_rich Low_complexity Low_complexity 1 25 0 209 304 0 0 chr13 64631511 64631567 -55113331 - L2 LINE L2 -640 2674 2619 * 228 338 98 0 chr13 64631566 64631699 -55113199 - MIR SINE MIR -2 260 115 180 356 70 56 chr13 64632873 64633319 -55111579 - L2 LINE L2 -38 3275 2824 706 350 111 50 chr13 64633741 64635297 -55109601 - L2 LINE L2 -1205 2109 458 676 284 14 27 chr13 64636116 64636338 -55108560 - MER20 DNA MER1_type 0 219 1 1270 233 11 93 chr13 64636671 64637018 -55107880 - L1MA10 LINE L1 -10 6324 6023 2084 129 0 17 chr13 64637018 64637320 -55107578 + AluSq SINE Alu 1 297 -16 1270 233 11 93 chr13 64637320 64637436 -55107462 - L1MA10 LINE L1 -311 6023 5899 272 78 39 0 chr13 64637436 64637487 -55107411 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 7810 25 1 0 chr13 64637487 64639063 -55105835 - L1PA2 LINE L1 -18 6137 4561 182 37 37 0 chr13 64640866 64640893 -55104005 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr13 64641253 64641275 -55103623 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 64641452 64641473 -55103425 + AT_rich Low_complexity Low_complexity 1 21 0 3269 218 28 99 chr13 64643695 64644955 -55099943 + L1MCb LINE L1 1 1170 -4875 5204 167 28 39 chr13 64644975 64646610 -55098288 - L1MA4 LINE L1 -5 6295 4365 1374 216 56 10 chr13 64646610 64647022 -55097876 + L1MCb LINE L1 1205 1635 -4929 231 298 337 26 chr13 64647217 64648502 -55096396 + L2 LINE L2 600 2283 -1031 352 371 150 7 chr13 64648590 64648897 -55096001 + L2 LINE L2 2857 3207 -106 26 30 0 0 chr13 64650009 64650042 -55094856 + AT_rich Low_complexity Low_complexity 1 33 0 471 48 0 0 chr13 64651694 64651756 -55093142 + (CA)n Simple_repeat Simple_repeat 1 62 0 1011 190 0 0 chr13 64652714 64652877 -55092021 + FRAM SINE Alu 1 155 -21 674 180 0 0 chr13 64653110 64653221 -55091677 - FLAM_C SINE Alu -32 111 1 206 368 91 43 chr13 64653321 64653807 -55091091 + L2 LINE L2 2465 2973 -341 548 115 0 0 chr13 64654257 64654335 -55090563 - MADE1 DNA Mariner -1 79 2 201 204 20 0 chr13 64654569 64654618 -55090280 + (TTA)n Simple_repeat Simple_repeat 1 50 0 31 0 0 0 chr13 64655372 64655403 -55089495 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 64656051 64656072 -55088826 + AT_rich Low_complexity Low_complexity 1 21 0 717 294 31 8 chr13 64656161 64656416 -55088482 + L1MEc LINE L1 42 302 -6094 21 0 0 0 chr13 64656793 64656814 -55088084 + AT_rich Low_complexity Low_complexity 1 21 0 1361 152 34 0 chr13 64656893 64657130 -55087768 + HSMAR2 DNA Mariner 3 247 -1055 1937 157 41 19 chr13 64657134 64657497 -55087401 + THE1C LTR MaLR 1 371 -4 8235 154 54 7 chr13 64657499 64658959 -55085939 + THE1C-int LTR MaLR 6 1536 -44 6164 163 17 11 chr13 64658959 64659005 -55085893 + HSMAR2 DNA Mariner 199 243 -1059 1898 150 56 17 chr13 64659005 64659364 -55085534 + THE1C LTR MaLR 1 373 -2 6164 163 17 11 chr13 64659364 64660408 -55084490 + HSMAR2 DNA Mariner 243 1296 -6 429 275 67 20 chr13 64661091 64661240 -55083658 + MIR SINE MIR 97 252 -10 1353 153 45 150 chr13 64661480 64661701 -55083197 - MLT1C LTR MaLR -2 465 303 2175 119 3 3 chr13 64661701 64662011 -55082887 - AluSx SINE Alu -2 310 1 1353 153 45 150 chr13 64662011 64662189 -55082709 - MLT1C LTR MaLR -164 303 108 2095 109 80 9 chr13 64663541 64663891 -55081007 + THE1C LTR MaLR 1 375 0 3392 185 25 52 chr13 64663902 64665170 -55079728 + L1PB2 LINE L1 4903 6137 -14 315 333 110 40 chr13 64665282 64665510 -55079388 + L1M4 LINE L1 3594 3837 -2309 25 31 0 0 chr13 64665566 64665598 -55079300 + AT_rich Low_complexity Low_complexity 1 32 0 243 198 11 22 chr13 64665785 64665876 -55079022 + CT-rich Low_complexity Low_complexity 4 93 0 525 244 8 0 chr13 64666019 64666138 -55078760 - L1MC1 LINE L1 0 6333 6214 2313 201 25 29 chr13 64666214 64666570 -55078328 - L1MC1 LINE L1 -127 6206 5851 2023 137 3 13 chr13 64666570 64666885 -55078013 - AluSq SINE Alu -1 312 1 2313 201 25 29 chr13 64666885 64667080 -55077818 - L1MC1 LINE L1 -482 5851 5657 3988 190 8 74 chr13 64667138 64668021 -55076877 - L1MCa LINE L1 -5583 843 19 2051 60 0 0 chr13 64668207 64668475 -55076423 - L1PA4 LINE L1 0 6155 5888 183 139 0 0 chr13 64668759 64668795 -55076103 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 2078 212 48 71 chr13 64669011 64669700 -55075198 + MER61E LTR ERV1 1 776 -3 210 71 0 0 chr13 64670145 64670173 -55074725 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr13 64670255 64670290 -55074608 + AT_rich Low_complexity Low_complexity 1 35 0 232 288 136 8 chr13 64670366 64670484 -55074414 + MIR SINE MIR 118 250 -12 35 63 0 0 chr13 64671458 64671521 -55073377 + AT_rich Low_complexity Low_complexity 1 63 0 231 88 0 0 chr13 64671529 64671563 -55073335 + (TTG)n Simple_repeat Simple_repeat 1 34 0 302 286 0 0 chr13 64671770 64671854 -55073044 - MLT1I LTR MaLR 0 409 326 334 318 85 55 chr13 64672190 64672649 -55072249 + L1MC4a LINE L1 5442 5618 -546 33 43 0 0 chr13 64672750 64672797 -55072101 + AT_rich Low_complexity Low_complexity 1 47 0 318 307 14 36 chr13 64672919 64673059 -55071839 + Tigger8 DNA MER2_type 322 458 -208 21 57 0 0 chr13 64673437 64673472 -55071426 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 64674422 64674457 -55070441 + AT_rich Low_complexity Low_complexity 1 35 0 212 354 94 0 chr13 64674460 64674587 -55070311 + L3 LINE CR1 307 445 -1132 5930 200 38 10 chr13 64674830 64675245 -55069653 + L1PA16 LINE L1 3973 4375 -1791 306 0 0 0 chr13 64675245 64675279 -55069619 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 5930 200 38 10 chr13 64675279 64676982 -55067916 + L1PA16 LINE L1 4375 6153 -13 279 0 0 0 chr13 64677175 64677206 -55067692 + (CA)n Simple_repeat Simple_repeat 1 31 0 2184 125 3 0 chr13 64677779 64678091 -55066807 + AluSp SINE Alu 1 313 0 534 68 34 0 chr13 64678096 64678184 -55066714 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 294 73 0 0 chr13 64679011 64679052 -55065846 + (CA)n Simple_repeat Simple_repeat 1 41 0 2311 94 3 0 chr13 64680031 64680339 -55064559 - AluSc SINE Alu 0 309 1 363 333 134 62 chr13 64680639 64680915 -55063983 + HAL1 LINE L1 566 861 -1646 574 318 99 69 chr13 64681493 64682079 -55062819 - L2 LINE L2 -8 3305 2714 975 223 13 109 chr13 64682166 64682552 -55062346 - LTR41 LTR ERVL -7 766 418 1902 214 84 31 chr13 64682555 64683064 -55061834 + L1PB2 LINE L1 5597 6132 -19 706 226 32 21 chr13 64683296 64683486 -55061412 - LTR41 LTR ERVL -573 200 9 1276 221 31 22 chr13 64683794 64684197 -55060701 - MLT2B1 LTR ERVL -48 472 1 2772 288 109 31 chr13 64684238 64685839 -55059059 + L1ME1 LINE L1 35 1760 -4636 676 232 36 55 chr13 64685839 64686059 -55058839 + MER20 DNA MER1_type 4 219 0 243 0 0 0 chr13 64686063 64686090 -55058808 + (CCA)n Simple_repeat Simple_repeat 1 27 0 422 301 11 11 chr13 64686119 64686295 -55058603 + L1ME1 LINE L1 1826 2001 -4395 2548 196 114 33 chr13 64686302 64686994 -55057904 + LTR48 LTR ERV1 28 775 -12 227 226 7 88 chr13 64686998 64687135 -55057763 + L1ME1 LINE L1 2003 2128 -4268 1334 231 168 6 chr13 64687337 64687701 -55057197 - LTR52-int LTR ERVL -3133 423 1 760 169 19 26 chr13 64687704 64687858 -55057040 - LTR52 LTR ERVL -6 415 263 31 26 0 0 chr13 64687884 64687922 -55056976 + AT_rich Low_complexity Low_complexity 1 38 0 1130 203 15 30 chr13 64687931 64688197 -55056701 - LTR52 LTR ERVL -158 263 2 1532 261 93 3 chr13 64688213 64688806 -55056092 + L1ME1 LINE L1 4692 5337 -878 239 265 0 84 chr13 64688848 64688931 -55055967 - MER20 DNA MER1_type -74 145 70 2342 272 35 18 chr13 64689048 64689882 -55055016 + L1PA13 LINE L1 5315 6162 -1 564 308 35 38 chr13 64689878 64690167 -55054731 + L1ME1 LINE L1 5944 6231 -4 * 21 0 0 0 chr13 64692745 64692766 -55052132 + AT_rich Low_complexity Low_complexity 1 21 0 2482 55 0 0 chr13 64692872 64693180 -55051718 + AluY SINE Alu 1 308 -3 1372 200 42 3 chr13 64693464 64693749 -55051149 + AluJo SINE Alu 3 298 -14 283 234 48 8 chr13 64694199 64694323 -55050575 - L1M4 LINE L1 -3222 2924 2796 300 290 32 52 chr13 64694372 64694527 -55050371 + HERV16 LTR ERVL 3212 3363 -1633 823 198 13 75 chr13 64694534 64694761 -55050137 + L1ME LINE L1 4114 4326 -1820 1759 193 31 51 chr13 64694870 64695285 -55049613 - LTR55 LTR ERV -136 412 6 279 0 0 0 chr13 64695287 64695318 -55049580 + (CA)n Simple_repeat Simple_repeat 2 32 0 2412 241 44 83 chr13 64695319 64696263 -55048635 + L1ME LINE L1 4335 5314 -852 2251 82 0 0 chr13 64696263 64696554 -55048344 + AluY SINE Alu 1 291 -20 2412 241 44 83 chr13 64696554 64696793 -55048105 + L1ME LINE L1 5314 5442 -724 5692 50 33 0 chr13 64696793 64697513 -55047385 + L1PA4 LINE L1 5409 6152 -3 2412 241 44 83 chr13 64697513 64697702 -55047196 + L1ME LINE L1 5442 5637 -529 277 273 0 0 chr13 64697710 64697776 -55047122 + LTR16B LTR ERVL 9 74 -390 24 0 0 0 chr13 64697785 64697809 -55047089 + AT_rich Low_complexity Low_complexity 1 24 0 1964 130 7 3 chr13 64697918 64698202 -55046696 - AluSg SINE Alu -25 285 1 313 122 95 0 chr13 64698208 64698282 -55046616 - L1MA7 LINE L1 0 6291 6211 918 234 86 32 chr13 64698375 64698918 -55045980 - L1MA8 LINE L1 -102 6189 4106 404 384 26 33 chr13 64698938 64699209 -55045689 + LTR16B LTR ERVL 94 362 -102 26 30 0 0 chr13 64701357 64701390 -55043508 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 64701545 64701566 -55043332 + AT_rich Low_complexity Low_complexity 1 21 0 1868 155 26 40 chr13 64702443 64702823 -55042075 - THE1C LTR MaLR 0 375 1 221 211 28 9 chr13 64702872 64702981 -55041917 + (TA)n Simple_repeat Simple_repeat 2 112 0 208 347 56 56 chr13 64703376 64703520 -55041378 + L2 LINE L2 3167 3310 -3 378 283 39 71 chr13 64704137 64704420 -55040478 + L1MEd LINE L1 981 1254 -4865 228 292 22 0 chr13 64704618 64704707 -55040191 + HAL1 LINE L1 1553 1643 -864 27 49 0 0 chr13 64704938 64704979 -55039919 + AT_rich Low_complexity Low_complexity 1 41 0 316 338 80 13 chr13 64705605 64705919 -55038979 - L1ME3A LINE L1 -61 6109 5775 464 223 122 35 chr13 64705955 64706184 -55038714 - L1ME3A LINE L1 -492 5678 5430 236 274 96 48 chr13 64706782 64706928 -55037970 - L1MCc LINE L1 -1141 2161 1827 468 57 14 0 chr13 64707114 64707184 -55037714 - L1MA3 LINE L1 -1 6304 6234 360 188 89 0 chr13 64707185 64707286 -55037612 + L1MEd LINE L1 2291 2400 -3729 21 36 0 0 chr13 64707290 64707318 -55037580 + AT_rich Low_complexity Low_complexity 1 28 0 230 303 43 38 chr13 64707362 64707573 -55037325 - L1MCc LINE L1 -4932 1491 1280 230 404 48 0 chr13 64708208 64708354 -55036544 + L2 LINE L2 3144 3296 -17 332 308 0 19 chr13 64708612 64708716 -55036182 + (TATATG)n Simple_repeat Simple_repeat 3 104 0 2289 121 28 6 chr13 64711075 64711431 -55033467 - THE1B LTR MaLR 0 364 1 378 277 100 33 chr13 64711435 64711706 -55033192 - L1MC5 LINE L1 -1023 6938 6650 216 350 75 25 chr13 64711873 64711993 -55032905 + MIR SINE MIR 51 176 -86 237 299 60 8 chr13 64712282 64712399 -55032499 - MIR SINE MIR 0 262 140 23 0 0 0 chr13 64712808 64712831 -55032067 + AT_rich Low_complexity Low_complexity 1 23 0 1529 199 0 21 chr13 64712832 64713123 -55031775 - AluJo SINE Alu -25 287 3 5142 176 22 43 chr13 64713137 64713329 -55031569 - L1PA16 LINE L1 -9 6157 5962 270 0 0 0 chr13 64713329 64713359 -55031539 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1772 167 4 0 chr13 64713359 64713640 -55031258 - AluSx SINE Alu -30 282 1 5142 176 22 43 chr13 64713640 64715212 -55029686 - L1PA16 LINE L1 -202 5964 4438 323 291 12 0 chr13 64715216 64715302 -55029596 + L2 LINE L2 3224 3310 -3 35 54 0 0 chr13 64715369 64715425 -55029473 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr13 64716337 64716361 -55028537 + AT_rich Low_complexity Low_complexity 1 24 0 696 281 72 35 chr13 64716458 64716863 -55028035 - LTR52 LTR ERVL -1 420 1 357 349 53 49 chr13 64717174 64717329 -55027569 - L2 LINE L2 -252 3061 2908 1683 199 109 79 chr13 64717329 64717863 -55027035 + MER44D DNA MER2_type 1 605 0 357 349 53 49 chr13 64717863 64718194 -55026704 - L2 LINE L2 -405 2908 2572 1093 196 5 164 chr13 64718230 64718670 -55026228 - L1P LINE L1 -1244 4902 4533 239 285 115 39 chr13 64718769 64718899 -55025999 - L2 LINE L2 -864 2450 2311 22 0 0 0 chr13 64719015 64719037 -55025861 + AT_rich Low_complexity Low_complexity 1 22 0 239 219 0 12 chr13 64721678 64721760 -55023138 + (TATG)n Simple_repeat Simple_repeat 4 84 0 205 159 0 45 chr13 64722422 64722466 -55022432 + L2 LINE L2 1971 2012 -1302 216 195 12 37 chr13 64723181 64723263 -55021635 + (TTATA)n Simple_repeat Simple_repeat 3 82 0 23 33 0 0 chr13 64723374 64723404 -55021494 + AT_rich Low_complexity Low_complexity 1 30 0 190 160 40 0 chr13 64723742 64723792 -55021106 + (TA)n Simple_repeat Simple_repeat 2 53 0 2748 13 3 0 chr13 64723799 64724109 -55020789 - AluYb8 SINE Alu -7 311 1 382 67 4 0 chr13 64724290 64724349 -55020549 - L1 LINE L1 -1351 4795 4735 25 31 0 0 chr13 64725340 64725372 -55019526 + AT_rich Low_complexity Low_complexity 1 32 0 218 255 0 0 chr13 64725590 64725641 -55019257 + GA-rich Low_complexity Low_complexity 2 52 0 281 294 112 23 chr13 64726235 64726620 -55018278 + L1ME4a LINE L1 5523 5941 -180 29 47 0 0 chr13 64727040 64727083 -55017815 + AT_rich Low_complexity Low_complexity 1 43 0 1799 216 25 42 chr13 64727952 64728424 -55016474 + MLT2C2 LTR ERVL 1 464 0 1056 249 64 70 chr13 64728564 64729084 -55015814 + MER52A LTR ERV1 275 1459 -141 231 281 0 18 chr13 64729445 64729502 -55015396 - MLT1K LTR MaLR -351 237 182 240 361 10 0 chr13 64729802 64729899 -55014999 + MIR SINE MIR 77 174 -88 264 312 93 68 chr13 64730036 64730273 -55014625 + MIR SINE MIR 6 248 -14 23 33 0 0 chr13 64731408 64731438 -55013460 + AT_rich Low_complexity Low_complexity 1 30 0 3679 131 6 34 chr13 64734095 64734722 -55010176 - MER4B LTR ERV1 0 610 1 275 326 39 0 chr13 64736075 64736204 -55008694 - L1ME1 LINE L1 -65 6101 5968 6982 245 70 18 chr13 64736208 64739290 -55005608 - L1 LINE L1 -1731 5834 2589 930 227 47 13 chr13 64739274 64739519 -55005379 + L1MD1 LINE L1 2205 2440 -4100 * 212 29 0 59 chr13 64739519 64739553 -55005345 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 930 227 47 13 chr13 64739553 64739822 -55005076 + L1MD1 LINE L1 2440 3169 -3371 1034 246 115 42 chr13 64739834 64741060 -55003838 + L1MD1 LINE L1 4610 5934 -743 1897 214 90 26 chr13 64741079 64741559 -55003339 + L1MD1 LINE L1 6043 6563 -73 1979 118 7 7 chr13 64741559 64741855 -55003043 + AluY SINE Alu 1 296 -15 1897 214 90 26 chr13 64741855 64741917 -55002981 + L1MD1 LINE L1 6563 6620 -16 225 203 85 0 chr13 64741939 64741998 -55002900 + MER3 DNA MER1_type 145 208 -1 1957 143 0 10 chr13 64742920 64743220 -55001678 + AluSx SINE Alu 1 297 -15 207 333 65 39 chr13 64743221 64743374 -55001524 - MER5A DNA MER1_type -32 157 1 21 57 0 0 chr13 64743948 64743983 -55000915 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr13 64744070 64744116 -55000782 + AT_rich Low_complexity Low_complexity 1 46 0 1824 224 25 26 chr13 64744906 64745396 -54999502 + L1MA7 LINE L1 5782 6270 -21 628 365 104 16 chr13 64745810 64746542 -54998356 + L2 LINE L2 2072 2867 -447 623 355 136 32 chr13 64746631 64747358 -54997540 + L2 LINE L2 1731 2533 -781 307 331 179 0 chr13 64747697 64747848 -54997050 - MER5A DNA MER1_type 0 189 12 22 56 0 0 chr13 64747890 64747926 -54996972 + AT_rich Low_complexity Low_complexity 1 36 0 2467 51 6 10 chr13 64749072 64749384 -54995514 + AluY SINE Alu 1 311 0 1642 153 13 20 chr13 64749614 64749914 -54994984 + L1PA15 LINE L1 5868 6165 0 244 304 0 0 chr13 64750450 64750529 -54994369 + MIR SINE MIR 183 261 -1 22 0 0 0 chr13 64754471 64754493 -54990405 + AT_rich Low_complexity Low_complexity 1 22 0 224 183 0 33 chr13 64755504 64755564 -54989334 + GA-rich Low_complexity Low_complexity 1 58 0 6183 115 11 27 chr13 64755705 64756762 -54988136 - L1M1 LINE L1 -3967 3598 2559 493 86 25 37 chr13 64756762 64756843 -54988055 + MER84 LTR ERVI 1 80 -427 1153 152 5 20 chr13 64756846 64757044 -54987854 + MER84 LTR ERVI 1 195 -312 2978 125 16 7 chr13 64757044 64757493 -54987405 + MLT2A2 LTR ERVL 1 453 0 34504 88 5 8 chr13 64757493 64762118 -54982780 + HERVL-A2-A2 LTR ERVL 1 4609 -1045 1633 175 11 0 chr13 64762159 64762428 -54982470 - AluSx SINE Alu -40 272 1 320 89 22 0 chr13 64762428 64762473 -54982425 + HERVL-A2-A2 LTR ERVL 4596 4641 -1013 1017 152 0 0 chr13 64762573 64762738 -54982160 + HERVL-A2-A2 LTR ERVL 5490 5654 0 3100 112 18 0 chr13 64762738 64763183 -54981715 + MLT2A2 LTR ERVL 1 453 0 1459 173 81 7 chr13 64763183 64763454 -54981444 + MER84 LTR ERVI 191 481 -26 13737 178 32 12 chr13 64763482 64764234 -54980664 - L1M1 LINE L1 -5015 2550 1814 216 0 0 0 chr13 64764234 64764258 -54980640 + (TC)n Simple_repeat Simple_repeat 1 24 0 13737 178 32 12 chr13 64764258 64766002 -54978896 - L1M1 LINE L1 -5751 1814 5 296 288 128 17 chr13 64766023 64766146 -54978752 - MIR SINE MIR -62 146 8 1958 156 44 22 chr13 64766393 64766758 -54978140 - THE1C LTR MaLR 0 375 3 8887 122 68 40 chr13 64766760 64768298 -54976600 - THE1C-int LTR MaLR 0 1580 1 2159 132 5 74 chr13 64768298 64768701 -54976197 - THE1C LTR MaLR 0 375 1 258 81 0 0 chr13 64768914 64768951 -54975947 + (A)n Simple_repeat Simple_repeat 1 37 0 578 278 39 29 chr13 64769527 64769732 -54975166 - MER20 DNA MER1_type -12 207 1 21 0 0 0 chr13 64771565 64771586 -54973312 + AT_rich Low_complexity Low_complexity 1 21 0 894 237 52 62 chr13 64771818 64772219 -54972679 - MLT2C1 LTR ERVL 0 397 1 324 286 117 19 chr13 64772219 64772366 -54972532 - LTR16A LTR ERVL -105 345 181 552 215 0 0 chr13 64773009 64773290 -54971608 + (TA)n Simple_repeat Simple_repeat 1 281 0 984 194 0 21 chr13 64773290 64773476 -54971422 - AluJb SINE Alu -31 281 100 4288 133 9 60 chr13 64773810 64774665 -54970233 - L1MA4A LINE L1 -6 6297 5486 226 107 119 0 chr13 64774665 64774749 -54970149 + (TA)n Simple_repeat Simple_repeat 2 95 0 220 27 54 0 chr13 64774773 64774810 -54970088 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2178 79 0 28 chr13 64774812 64775103 -54969795 - AluY SINE Alu -28 283 1 217 159 45 15 chr13 64775108 64775248 -54969650 + (TA)n Simple_repeat Simple_repeat 1 144 0 5078 206 55 16 chr13 64775249 64776580 -54968318 - L1 LINE L1 -3028 3820 2543 288 0 0 0 chr13 64776580 64776612 -54968286 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 5078 206 55 16 chr13 64776612 64776748 -54968150 - L1 LINE L1 -4305 2543 2414 183 80 0 0 chr13 64776748 64776773 -54968125 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3292 93 0 0 chr13 64776773 64777216 -54967682 - L1PA7 LINE L1 -18 6136 5694 5078 206 55 16 chr13 64777216 64777856 -54967042 - L1 LINE L1 -4433 2415 1628 303 203 0 0 chr13 64778233 64778302 -54966596 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2881 162 32 28 chr13 64780019 64780193 -54964705 - MER67C LTR ERV1 0 710 538 1422 191 157 19 chr13 64780193 64780569 -54964329 - MSTA LTR MaLR 0 428 1 2881 162 32 28 chr13 64780569 64780959 -54963939 - MER67C LTR ERV1 -172 538 144 1306 129 71 0 chr13 64780959 64781169 -54963729 + MER30 DNA MER1_type 1 225 -5 342 224 12 85 chr13 64781183 64781348 -54963550 - MER67C LTR ERV1 -557 153 1 419 186 31 21 chr13 64782235 64782332 -54962566 - LTR23 LTR ERV1 -2 435 338 195 318 81 34 chr13 64784333 64784481 -54960417 + L2 LINE L2 3120 3274 -39 216 163 0 0 chr13 64785448 64785491 -54959407 + CT-rich Low_complexity Low_complexity 2 44 0 1421 198 57 9 chr13 64786770 64787104 -54957794 - L1MB2 LINE L1 0 6171 5822 27 29 0 0 chr13 64787272 64787306 -54957592 + AT_rich Low_complexity Low_complexity 1 34 0 394 291 121 15 chr13 64787753 64787952 -54956946 - L2 LINE L2 -936 2378 2159 218 349 52 101 chr13 64789730 64790154 -54954744 + L2 LINE L2 2833 3235 -37 334 311 195 8 chr13 64790464 64790660 -54954238 - MIR SINE MIR -13 249 16 317 137 26 78 chr13 64792394 64792471 -54952427 - L1MA4A LINE L1 -6 6280 6091 25 51 0 0 chr13 64793378 64793417 -54951481 + AT_rich Low_complexity Low_complexity 1 39 0 1775 281 111 59 chr13 64793588 64795376 -54949522 - L1ME1 LINE L1 -5 6230 4477 1481 307 48 21 chr13 64795512 64796362 -54948536 - L1ME1 LINE L1 -3983 2413 1541 411 21 0 0 chr13 64796363 64796411 -54948487 + (TG)n Simple_repeat Simple_repeat 2 49 0 2085 136 19 35 chr13 64796595 64796958 -54947940 - L1PB1 LINE L1 0 6151 5793 455 0 18 0 chr13 64796958 64797013 -54947885 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 2952 148 31 55 chr13 64797065 64798059 -54946839 - L1PB1 LINE L1 -274 5877 4909 39 50 0 0 chr13 64798726 64798786 -54946112 + AT_rich Low_complexity Low_complexity 1 60 0 301 346 75 15 chr13 64799835 64800101 -54944797 - LTR33 LTR ERVL -5 516 235 484 308 28 0 chr13 64800166 64800309 -54944589 - LTR33 LTR ERVL -374 147 1 1657 309 111 37 chr13 64800309 64801381 -54943517 - L2 LINE L2 -1150 2164 1014 2608 238 15 4 chr13 64801391 64801938 -54942960 - MER68 LTR ERV1 -9 553 1 831 259 64 88 chr13 64801962 64802124 -54942774 - L2 LINE L2 -2326 988 824 1762 55 0 5 chr13 64802124 64802341 -54942557 + AluY SINE Alu 84 299 -12 831 259 64 88 chr13 64802341 64802599 -54942299 - L2 LINE L2 -2490 824 578 392 358 15 22 chr13 64802813 64802947 -54941951 - L2 LINE L2 -2804 510 378 477 275 90 10 chr13 64803088 64803288 -54941610 + L2 LINE L2 2329 2544 -770 1464 281 106 26 chr13 64804731 64805524 -54939374 + MSTC-int LTR MaLR 742 1651 0 1236 123 0 39 chr13 64805524 64805728 -54939170 + MSTC LTR MaLR 1 196 -232 628 103 0 0 chr13 64805740 64805837 -54939061 + AluJ/FRAM SINE Alu 216 312 0 1249 218 4 0 chr13 64805857 64806086 -54938812 + MSTC LTR MaLR 197 426 -2 599 223 74 0 chr13 64806088 64806236 -54938662 - MER58B DNA MER1_type -5 336 178 492 201 76 35 chr13 64806401 64806545 -54938353 - LTR45 LTR ERV1 0 525 376 2411 68 0 13 chr13 64806819 64807129 -54937769 - AluSc SINE Alu -3 306 1 432 366 42 60 chr13 64807524 64807978 -54936920 + L2 LINE L2 2827 3272 0 250 318 48 32 chr13 64808526 64808652 -54936246 - MIR SINE MIR -127 135 8 362 307 82 64 chr13 64809316 64809658 -54935240 + L1MC4a LINE L1 5729 6076 -1732 336 279 12 0 chr13 64809742 64809828 -54935070 + L1MC4 LINE L1 6617 6703 -1339 1434 221 0 23 chr13 64809837 64810144 -54934754 - AluJo SINE Alu -12 300 1 550 0 29 0 chr13 64810431 64810501 -54934397 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 368 267 42 18 chr13 64811532 64811697 -54933201 - Tigger1 DNA MER2_type -1316 1102 934 234 320 147 6 chr13 64811929 64812085 -54932813 + L1MC4 LINE L1 6695 6872 -1170 902 204 35 0 chr13 64813261 64813487 -54931411 + L1MA8 LINE L1 6058 6291 0 186 324 14 54 chr13 64813530 64813604 -54931294 - L2 LINE L2 -44 3228 3158 219 287 160 11 chr13 64815294 64815388 -54929510 - MIR SINE MIR -15 247 140 24 32 0 0 chr13 64815530 64815561 -54929337 + AT_rich Low_complexity Low_complexity 1 31 0 228 296 45 0 chr13 64815616 64815704 -54929194 + L1M4 LINE L1 4076 4167 -1979 1380 247 62 70 chr13 64815785 64816329 -54928569 + MLT1E2 LTR MaLR 52 626 0 262 264 16 31 chr13 64816329 64816458 -54928440 + L1ME1 LINE L1 6040 6166 0 221 0 35 0 chr13 64816908 64816937 -54927961 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1285 43 0 6 chr13 64816937 64817098 -54927800 - L1PA3 LINE L1 -13 6142 5983 25 0 0 0 chr13 64817542 64817567 -54927331 + AT_rich Low_complexity Low_complexity 1 25 0 1618 152 26 4 chr13 64818041 64818310 -54926588 + AluJb SINE Alu 25 299 -13 312 293 7 75 chr13 64818494 64818561 -54926337 + MIR SINE MIR 13 66 -196 6014 154 63 10 chr13 64818561 64819726 -54925172 - Tigger3b DNA MER2_type -2 1229 4 312 293 7 75 chr13 64819726 64819805 -54925093 + MIR SINE MIR 66 149 -113 2396 59 0 0 chr13 64820062 64820366 -54924532 + AluY SINE Alu 2 305 -6 30 45 0 0 chr13 64821500 64821544 -54923354 + AT_rich Low_complexity Low_complexity 1 44 0 228 111 0 0 chr13 64822168 64822204 -54922694 + (TG)n Simple_repeat Simple_repeat 1 36 0 1098 248 47 52 chr13 64823001 64823344 -54921554 + MLT1A1 LTR MaLR 25 365 0 188 339 34 0 chr13 64825085 64825144 -54919754 - MIR SINE MIR -111 97 37 186 43 0 0 chr13 64825392 64825415 -54919483 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr13 64825535 64825563 -54919335 + AT_rich Low_complexity Low_complexity 1 28 0 291 248 132 8 chr13 64826302 64826423 -54918475 + MIR SINE MIR 76 211 -51 204 350 49 8 chr13 64826712 64826835 -54918063 - L2 LINE L2 -1038 2276 2149 22 35 0 0 chr13 64827404 64827433 -54917465 + AT_rich Low_complexity Low_complexity 1 29 0 270 227 0 15 chr13 64828841 64828907 -54915991 + CT-rich Low_complexity Low_complexity 1 65 0 204 304 122 34 chr13 64828920 64829068 -54915830 + L2 LINE L2 2307 2467 -847 2488 42 0 22 chr13 64829674 64829985 -54914913 + AluY SINE Alu 1 304 -7 860 182 94 5 chr13 64830448 64830640 -54914258 + MER3 DNA MER1_type 1 209 0 407 51 0 17 chr13 64831170 64831229 -54913669 + (TA)n Simple_repeat Simple_repeat 1 58 0 26 30 0 0 chr13 64831501 64831534 -54913364 + AT_rich Low_complexity Low_complexity 1 33 0 34 72 0 0 chr13 64832560 64832629 -54912269 + AT_rich Low_complexity Low_complexity 1 69 0 325 331 130 18 chr13 64835824 64835993 -54908905 - L3 LINE CR1 -793 784 597 396 114 0 82 chr13 64836798 64836982 -54907916 + (TA)n Simple_repeat Simple_repeat 1 169 0 287 121 0 96 chr13 64837019 64837217 -54907681 + (TA)n Simple_repeat Simple_repeat 2 180 0 2209 243 40 20 chr13 64837219 64837873 -54907025 - L1M4 LINE L1 -782 5364 4698 1509 236 66 58 chr13 64837882 64838505 -54906393 - L1MCa LINE L1 -4809 1755 1128 956 236 166 19 chr13 64838506 64838879 -54906019 + MSTC LTR MaLR 1 428 0 751 254 36 54 chr13 64838880 64839160 -54905738 - L1MCa LINE L1 -4916 1129 855 575 165 9 36 chr13 64839157 64839285 -54905613 + L1PB4 LINE L1 5668 5790 -361 * 379 151 0 34 chr13 64839288 64839434 -54905464 + (TA)n Simple_repeat Simple_repeat 1 141 0 192 77 0 0 chr13 64839479 64839505 -54905393 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 755 191 42 0 chr13 64839510 64839678 -54905220 + L1PB4 LINE L1 5783 5957 -199 199 177 32 0 chr13 64840725 64840787 -54904111 + (CATA)n Simple_repeat Simple_repeat 4 67 0 21 71 0 0 chr13 64841245 64841287 -54903611 + AT_rich Low_complexity Low_complexity 1 42 0 200 323 172 0 chr13 64842317 64842410 -54902488 + L2 LINE L2 3141 3249 -23 745 316 32 20 chr13 64843813 64844060 -54900838 - MIR SINE MIR -11 251 2 233 345 76 0 chr13 64845852 64845971 -54898927 + MIR3 SINE MIR 60 187 -21 192 325 42 50 chr13 64846176 64846296 -54898602 - MIR SINE MIR -109 153 35 22 35 0 0 chr13 64846465 64846494 -54898404 + AT_rich Low_complexity Low_complexity 1 29 0 35 41 0 0 chr13 64847369 64847418 -54897480 + AT_rich Low_complexity Low_complexity 1 49 0 1164 238 53 12 chr13 64848298 64848618 -54896280 + MER58B DNA MER1_type 9 341 0 331 378 88 12 chr13 64850176 64850425 -54894473 - L3 LINE CR1 -232 1345 1078 600 288 24 0 chr13 64850813 64850983 -54893915 + L1MB1 LINE L1 4927 5100 -1046 5923 71 140 78 chr13 64850983 64851131 -54893767 + MER11A LTR ERVK 1 138 -1128 2123 109 0 7 chr13 64851131 64851433 -54893465 - AluY SINE Alu -11 300 1 5923 71 140 78 chr13 64851433 64852386 -54892512 + MER11A LTR ERVK 138 1266 0 4090 195 24 12 chr13 64852387 64853376 -54891522 + L1MB1 LINE L1 5096 6095 -73 477 124 11 0 chr13 64854326 64854414 -54890484 + MSTD LTR MaLR 323 396 0 389 305 107 15 chr13 64854489 64854686 -54890212 - MIR SINE MIR 0 262 48 564 84 0 0 chr13 64855034 64855117 -54889781 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 424 335 6 24 chr13 64856438 64856608 -54888290 - MIR SINE MIR -73 189 23 22 0 0 0 chr13 64856679 64856701 -54888197 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr13 64857171 64857214 -54887684 + AT_rich Low_complexity Low_complexity 1 43 0 34 93 0 0 chr13 64858149 64858246 -54886652 + AT_rich Low_complexity Low_complexity 1 97 0 367 93 0 67 chr13 64858246 64858321 -54886577 - L1PA13 LINE L1 -2 6161 6092 1786 153 13 19 chr13 64859898 64860212 -54884686 + AluJb SINE Alu 1 312 0 382 313 57 17 chr13 64860249 64860425 -54884473 + MER112 DNA MER1_type 69 251 -9 674 206 54 143 chr13 64860429 64860778 -54884120 + MLT1A2 LTR MaLR 1 318 -56 241 390 73 6 chr13 64861124 64861301 -54883597 - L3 LINE CR1 -836 741 553 24 56 0 42 chr13 64861305 64861376 -54883522 + AT_rich Low_complexity Low_complexity 1 68 0 31 68 0 0 chr13 64861435 64861494 -54883404 + AT_rich Low_complexity Low_complexity 1 59 0 385 364 64 14 chr13 64862032 64862315 -54882583 + L3 LINE CR1 778 1074 -503 809 150 13 106 chr13 64862505 64862731 -54882167 + L1MA9 LINE L1 6086 6290 -22 2146 68 4 0 chr13 64863476 64863742 -54881156 - AluY SINE Alu -8 303 37 23 0 0 0 chr13 64863785 64863808 -54881090 + AT_rich Low_complexity Low_complexity 1 23 0 2038 182 67 0 chr13 64864325 64864726 -54880172 - MSTA LTR MaLR 0 428 1 22 80 0 0 chr13 64865548 64865598 -54879300 + AT_rich Low_complexity Low_complexity 1 50 0 184 355 13 0 chr13 64865655 64865731 -54879167 + MER5A DNA MER1_type 16 92 -97 312 289 93 41 chr13 64866371 64866565 -54878333 + L1MC4a LINE L1 5668 5871 -1937 238 176 81 14 chr13 64867466 64867540 -54877358 + L1MDb LINE L1 1129 1207 -5202 273 222 32 0 chr13 64867595 64867658 -54877240 - MER67B LTR ERV1 -9 652 588 761 211 0 34 chr13 64867661 64867808 -54877090 - MER67B LTR ERV1 -519 142 1 1256 282 57 30 chr13 64867808 64868440 -54876458 + L1MDb LINE L1 1096 1744 -4664 685 244 66 55 chr13 64868479 64868860 -54876038 + L1MDb LINE L1 1950 2334 -4074 1006 239 64 33 chr13 64869087 64869429 -54875469 + LTR48 LTR ERV1 63 393 -394 2312 192 100 45 chr13 64869429 64870118 -54874780 + LTR8A LTR ERV1 1 727 0 1006 239 64 33 chr13 64870118 64870296 -54874602 + LTR48 LTR ERV1 393 787 0 * 1333 166 55 65 chr13 64870296 64870601 -54874297 - MER34B LTR ERV1 -110 455 154 2145 198 7 34 chr13 64870600 64871045 -54873853 + LTR24 LTR ERV1 35 467 0 758 150 24 0 chr13 64871045 64871159 -54873739 - MER34B LTR ERV1 -448 117 1 226 203 16 16 chr13 64871394 64871458 -54873440 + A-rich Low_complexity Low_complexity 2 65 0 657 219 115 38 chr13 64871754 64871937 -54872961 + MER31A LTR ERV1 1 197 -288 237 292 14 0 chr13 64872063 64872135 -54872763 + LTR33A LTR ERVL 439 511 -12 225 0 0 0 chr13 64872257 64872282 -54872616 + (TG)n Simple_repeat Simple_repeat 2 26 0 722 237 47 34 chr13 64872916 64873268 -54871630 + MER110 LTR ERV1 46 457 -34 180 0 0 0 chr13 64873279 64873299 -54871599 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 451 277 192 6 chr13 64873911 64874088 -54870810 + MER20 DNA MER1_type 1 210 -9 281 281 104 24 chr13 64877034 64877198 -54867700 - MLT1L LTR MaLR -14 601 425 237 65 0 0 chr13 64877403 64877434 -54867464 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 876 301 137 41 chr13 64879122 64880014 -54864884 - L2 LINE L2 -5 3308 2321 34 84 0 0 chr13 64880911 64880994 -54863904 + AT_rich Low_complexity Low_complexity 1 83 0 26 30 0 0 chr13 64881113 64881146 -54863752 + AT_rich Low_complexity Low_complexity 1 33 0 351 381 128 18 chr13 64881584 64882078 -54862820 - L2 LINE L2 -520 2794 2247 557 302 39 31 chr13 64882127 64882385 -54862513 - MER34 LTR ERV1 -30 512 253 345 234 92 129 chr13 64882373 64882544 -54862354 - MER34 LTR ERV1 -250 292 135 * 597 175 114 0 chr13 64882544 64882658 -54862240 - FLAM_C SINE Alu -6 127 1 345 234 92 129 chr13 64882658 64882789 -54862109 - MER34 LTR ERV1 -407 135 1 7354 35 9 0 chr13 64885864 64886755 -54858143 - L1PA4 LINE L1 -3 6152 5254 2194 47 0 0 chr13 64886756 64887033 -54857865 + L1PA4 LINE L1 4972 5248 -898 285 29 0 0 chr13 64887223 64887257 -54857641 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 243 0 0 0 chr13 64887395 64887422 -54857476 + (CA)n Simple_repeat Simple_repeat 2 28 0 311 368 91 21 chr13 64887582 64887867 -54857031 - L2 LINE L2 -448 2866 2562 775 228 44 66 chr13 64888510 64888738 -54856160 - MER58A DNA MER1_type -1 223 1 1666 165 9 48 chr13 64888886 64889201 -54855697 + AluJb SINE Alu 1 303 -9 227 213 0 0 chr13 64889646 64889693 -54855205 + T-rich Low_complexity Low_complexity 1 47 0 4142 79 9 0 chr13 64890819 64891386 -54853512 - L1PA8 LINE L1 -290 5882 5311 22 0 0 0 chr13 64891846 64891868 -54853030 + AT_rich Low_complexity Low_complexity 1 22 0 201 233 0 0 chr13 64891930 64891973 -54852925 - L2 LINE L2 0 3272 3230 234 356 11 0 chr13 64892522 64892609 -54852289 + MLT1K LTR MaLR 139 226 -362 21 0 0 0 chr13 64892839 64892860 -54852038 + AT_rich Low_complexity Low_complexity 1 21 0 515 312 13 34 chr13 64893120 64893357 -54851541 - L1M4 LINE L1 -2210 3936 3705 328 324 50 22 chr13 64893380 64893519 -54851379 + L1ME3A LINE L1 5828 5970 -200 1771 156 0 0 chr13 64893663 64893958 -54850940 - L1PA13 LINE L1 -1 6162 5868 6731 165 13 12 chr13 64893958 64895852 -54849046 - L1PA12 LINE L1 -234 5934 4037 1524 181 25 0 chr13 64896203 64896533 -54848365 - AluJo SINE Alu 0 337 1 265 398 28 11 chr13 64896964 64897140 -54847758 + L2 LINE L2 2914 3092 -180 387 255 20 10 chr13 64898042 64898144 -54846754 + LTR40b LTR ERVL 1 103 -359 3632 210 43 30 chr13 64898173 64899135 -54845763 - L1MC2 LINE L1 -9 6335 5362 207 123 0 70 chr13 64899137 64899194 -54845704 + (TA)n Simple_repeat Simple_repeat 1 53 0 2071 152 37 18 chr13 64899448 64899849 -54845049 - L1MA4 LINE L1 -11 6289 5881 225 0 0 0 chr13 64899903 64899928 -54844970 + (CA)n Simple_repeat Simple_repeat 2 26 0 301 191 79 34 chr13 64899973 64900062 -54844836 + L1MA4 LINE L1 5782 5874 -426 1596 198 3 3 chr13 64900209 64900497 -54844401 + AluJo SINE Alu 1 288 -24 230 304 112 52 chr13 64900681 64901046 -54843852 - HAL1 LINE L1 -878 1629 1243 741 231 13 21 chr13 64901188 64901546 -54843352 - LTR27 LTR ERV1 0 636 330 1591 218 79 43 chr13 64902178 64902308 -54842590 + MER67D LTR ERV1 1 125 -389 5291 80 37 14 chr13 64902308 64903071 -54841827 + LTR17 LTR ERV1 1 780 0 1591 218 79 43 chr13 64903071 64903432 -54841466 + MER67D LTR ERV1 125 510 -4 21 0 0 0 chr13 64904668 64904689 -54840209 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 64904841 64904869 -54840029 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 64905819 64905840 -54839058 + AT_rich Low_complexity Low_complexity 1 21 0 610 266 68 36 chr13 64906081 64906331 -54838567 + MIR SINE MIR 4 261 -1 364 342 36 15 chr13 64907116 64907312 -54837586 + L2 LINE L2 1883 2082 -1232 322 311 106 28 chr13 64907557 64907737 -54837161 + L2 LINE L2 2849 3042 -230 2138 125 3 0 chr13 64907878 64908183 -54836715 + AluSp SINE Alu 1 306 -7 308 24 24 0 chr13 64908333 64908374 -54836524 + (TG)n Simple_repeat Simple_repeat 1 42 0 1291 229 51 34 chr13 64908597 64909025 -54835873 + MER39 LTR ERV1 5 650 -57 2112 129 121 5 chr13 64909025 64909405 -54835493 + MSTA LTR MaLR 5 428 0 1291 229 51 34 chr13 64909405 64909439 -54835459 + MER39 LTR ERV1 650 682 -25 1444 144 34 4 chr13 64909525 64909792 -54835106 + LTR19B LTR ERV1 316 580 0 22 0 0 0 chr13 64911251 64911273 -54833625 + AT_rich Low_complexity Low_complexity 1 22 0 266 282 13 0 chr13 64911957 64912035 -54832863 - MLT1L LTR MaLR -26 589 511 1026 272 84 52 chr13 64912471 64912897 -54832001 - MER74B LTR ERVL -82 479 37 689 171 0 8 chr13 64912909 64913026 -54831872 + FLAM_C SINE Alu 9 124 -19 4172 246 33 15 chr13 64913198 64914655 -54830243 - L1MC/D LINE L1 -745 5681 4279 983 286 32 5 chr13 64914640 64915049 -54829849 - L1MC/D LINE L1 -2444 3982 3563 * 13960 184 36 16 chr13 64915076 64921785 -54823113 - L1PB1 LINE L1 -5 6862 6 9266 216 77 21 chr13 64921886 64921966 -54822932 - L1MCa LINE L1 -2989 3437 3363 2379 68 3 7 chr13 64921966 64922304 -54822594 - AluY SINE Alu 0 311 1 9266 216 77 21 chr13 64922304 64925473 -54819425 - L1MCa LINE L1 -3063 3363 6 26 50 0 0 chr13 64925490 64925530 -54819368 + AT_rich Low_complexity Low_complexity 1 40 0 8379 117 14 7 chr13 64926297 64926422 -54818476 + L1PA8A LINE L1 4049 4172 -1959 1931 125 44 0 chr13 64926422 64926719 -54818179 + AluSx SINE Alu 1 310 -2 8379 117 14 7 chr13 64926719 64928677 -54816221 + L1PA8A LINE L1 4172 6131 0 21 0 0 0 chr13 64928817 64928838 -54816060 + AT_rich Low_complexity Low_complexity 1 21 0 1975 165 16 16 chr13 64929256 64929631 -54815267 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr13 64929825 64929853 -54815045 + AT_rich Low_complexity Low_complexity 1 28 0 809 305 47 6 chr13 64929983 64930304 -54814594 + ERVL LTR ERVL 2245 2578 -3186 367 315 0 9 chr13 64930311 64930422 -54814476 - LTR33 LTR ERVL -406 115 6 2148 117 0 0 chr13 64930778 64931078 -54813820 + AluSg1 SINE Alu 1 300 -9 21 0 0 0 chr13 64931429 64931450 -54813448 + AT_rich Low_complexity Low_complexity 1 21 0 312 102 0 0 chr13 64931514 64931563 -54813335 + (TG)n Simple_repeat Simple_repeat 2 50 0 36 53 0 0 chr13 64933638 64933695 -54811203 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chr13 64933747 64933783 -54811115 + AT_rich Low_complexity Low_complexity 1 36 0 26 50 0 0 chr13 64933916 64933956 -54810942 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr13 64934340 64934364 -54810534 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr13 64935713 64935736 -54809162 + (CA)n Simple_repeat Simple_repeat 2 24 0 485 299 32 0 chr13 64936005 64936192 -54808706 - L1M4 LINE L1 -1225 4921 4729 351 250 42 0 chr13 64936226 64936346 -54808552 + MER103 DNA DNA 3 127 -39 2520 266 75 12 chr13 64937089 64938060 -54806838 - L1M4 LINE L1 -1094 5052 4021 1958 154 3 3 chr13 64938061 64938360 -54806538 - AluSx SINE Alu -13 299 1 293 181 173 23 chr13 64938405 64938538 -54806360 + L1MD2 LINE L1 5090 5242 -904 239 106 71 12 chr13 64938538 64938623 -54806275 + (TA)n Simple_repeat Simple_repeat 2 91 0 978 267 105 30 chr13 64938656 64939476 -54805422 + L1MD2 LINE L1 5258 6166 0 253 190 0 63 chr13 64939476 64939555 -54805343 + A-rich Low_complexity Low_complexity 5 78 0 498 332 250 11 chr13 64939589 64939953 -54804945 - L2 LINE L2 0 3313 2863 423 42 28 14 chr13 64940052 64940123 -54804775 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 240 111 0 0 chr13 64940250 64940286 -54804612 + (TTG)n Simple_repeat Simple_repeat 1 36 0 26 30 0 0 chr13 64941087 64941120 -54803778 + AT_rich Low_complexity Low_complexity 1 33 0 326 415 39 39 chr13 64942071 64942432 -54802466 + L2 LINE L2 76 436 -2878 11434 205 13 5 chr13 64942874 64946199 -54798699 - L1PA15 LINE L1 -7 6158 2814 2655 225 9 45 chr13 64946200 64946959 -54797939 + L1PA15 LINE L1 2765 3508 -3341 418 396 31 6 chr13 64947114 64947437 -54797461 + L2 LINE L2 754 1084 -2230 1139 369 83 21 chr13 64947572 64948545 -54796353 + L2 LINE L2 1897 2930 -384 245 278 0 0 chr13 64948592 64948646 -54796252 + L2 LINE L2 3019 3072 -241 2268 97 3 10 chr13 64948765 64949075 -54795823 + AluSc SINE Alu 2 309 0 2462 61 0 6 chr13 64949293 64949604 -54795294 - AluY SINE Alu -2 309 1 389 61 0 0 chr13 64949852 64949929 -54794969 - Alu SINE Alu 0 308 232 23 33 0 0 chr13 64950238 64950268 -54794630 + AT_rich Low_complexity Low_complexity 1 30 0 365 312 79 60 chr13 64950538 64950958 -54793940 - MLT1J LTR MaLR -6 505 78 308 282 0 0 chr13 64951062 64951140 -54793758 - HAL1b LINE L1 -674 674 597 1642 163 41 76 chr13 64951335 64951535 -54793363 + L1PA15 LINE L1 5829 6012 -181 2038 129 0 6 chr13 64951535 64951846 -54793052 + AluSx SINE Alu 3 311 -1 1642 163 41 76 chr13 64951846 64952022 -54792876 + L1PA15 LINE L1 6012 6193 0 307 356 35 0 chr13 64952587 64952702 -54792196 + L2 LINE L2 3154 3272 0 189 360 127 7 chr13 64952737 64952887 -54792011 - MIR SINE MIR -14 248 81 304 278 41 41 chr13 64953046 64953143 -54791755 - L3 LINE CR1 -278 1299 1203 204 336 107 34 chr13 64953617 64953766 -54791132 - L3 LINE CR1 -467 1110 951 185 344 54 0 chr13 64954119 64954212 -54790686 - MIR SINE MIR -1 261 164 22 0 0 0 chr13 64955222 64955244 -54789654 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr13 64955390 64955435 -54789463 + AT_rich Low_complexity Low_complexity 1 45 0 2084 117 0 19 chr13 64956928 64957237 -54787661 + AluSx SINE Alu 1 303 -9 2213 111 0 3 chr13 64958253 64958560 -54786338 + AluSc SINE Alu 3 308 -1 24 32 0 0 chr13 64958721 64958752 -54786146 + AT_rich Low_complexity Low_complexity 1 31 0 267 352 19 9 chr13 64958830 64958938 -54785960 - L2 LINE L2 -14 3299 3191 330 363 58 68 chr13 64959130 64959197 -54785701 - L2 LINE L2 -341 2973 2907 1903 151 7 0 chr13 64959197 64959489 -54785409 + AluSx SINE Alu 3 296 -16 330 363 58 68 chr13 64959489 64959699 -54785199 - L2 LINE L2 -407 2907 2699 276 321 75 37 chr13 64959734 64959921 -54784977 - L2 LINE L2 -941 2373 2180 1728 185 7 0 chr13 64960711 64960992 -54783906 - AluSx SINE Alu -27 285 3 283 327 60 33 chr13 64961204 64961354 -54783544 - MIR SINE MIR -108 154 1 227 193 0 18 chr13 64961368 64961425 -54783473 - LTR66 LTR ERVL -161 449 394 217 151 38 19 chr13 64961427 64961480 -54783418 + (TA)n Simple_repeat Simple_repeat 2 55 0 2249 113 3 0 chr13 64961554 64961863 -54783035 - AluSx SINE Alu -2 310 1 223 292 28 14 chr13 64962582 64962654 -54782244 - L2 LINE L2 -2559 755 683 222 200 0 0 chr13 64962675 64962715 -54782183 + (TG)n Simple_repeat Simple_repeat 2 41 0 476 267 118 20 chr13 64962761 64963016 -54781882 + L1MDa LINE L1 1329 1608 -4932 1955 104 4 7 chr13 64963160 64963438 -54781460 - AluSq SINE Alu -36 277 1 202 274 0 0 chr13 64965243 64965294 -54779604 + (CA)n Simple_repeat Simple_repeat 2 52 0 1307 202 22 15 chr13 64966520 64966792 -54778106 + AluJb SINE Alu 5 278 -34 297 0 0 0 chr13 64966792 64966825 -54778073 + (TC)n Simple_repeat Simple_repeat 2 34 0 676 69 77 0 chr13 64966825 64967099 -54777799 + (TA)n Simple_repeat Simple_repeat 1 295 0 24 32 0 0 chr13 64967468 64967499 -54777399 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr13 64968631 64968661 -54776237 + AT_rich Low_complexity Low_complexity 1 30 0 245 100 20 0 chr13 64969099 64969149 -54775749 + (TA)n Simple_repeat Simple_repeat 2 52 0 277 298 39 44 chr13 64969382 64969563 -54775335 + L1MDa LINE L1 1773 1952 -4769 1986 141 116 15 chr13 64969577 64969966 -54774932 - MSTA LTR MaLR 0 428 1 518 330 95 18 chr13 64970200 64970536 -54774362 + LTR16A LTR ERVL 1 362 -88 476 284 68 31 chr13 64970670 64971114 -54773784 + L1MDa LINE L1 2929 3388 -3152 286 220 11 22 chr13 64971273 64971364 -54773534 + A-rich Low_complexity Low_complexity 1 90 0 421 290 9 0 chr13 64971456 64971563 -54773335 - L1PA13 LINE L1 -5257 1530 1423 242 181 0 42 chr13 64971953 64972025 -54772873 + L1M4 LINE L1 2860 2928 -3218 249 301 194 0 chr13 64972332 64972435 -54772463 + MIR SINE MIR 14 136 -126 21 36 0 0 chr13 64972714 64972742 -54772156 + AT_rich Low_complexity Low_complexity 1 28 0 2065 133 20 0 chr13 64972760 64973062 -54771836 + AluSx SINE Alu 1 308 -4 3640 144 31 0 chr13 64976428 64977012 -54767886 + LTR43 LTR ERV1 1 602 0 432 296 24 41 chr13 64977125 64977294 -54767604 + MIR SINE MIR 86 251 -11 227 315 66 33 chr13 64977304 64977485 -54767413 + L1ME LINE L1 5590 5776 -345 2291 191 11 36 chr13 64977738 64977760 -54767138 + MLT1C LTR MaLR 3 24 -443 2610 130 34 0 chr13 64977760 64978174 -54766724 + MSTA LTR MaLR 1 428 0 2291 191 11 36 chr13 64978174 64978628 -54766270 + MLT1C LTR MaLR 24 467 0 671 204 235 19 chr13 64978951 64979275 -54765623 - LTR37A LTR ERV1 -1 425 32 374 256 0 11 chr13 64979350 64979440 -54765458 + Charlie5 DNA MER1_type 1 89 -2523 541 220 32 70 chr13 64979445 64979610 -54765288 + Charlie5 DNA MER1_type 277 436 -2188 2267 100 0 0 chr13 64979610 64979911 -54764987 + AluSg SINE Alu 1 301 -9 541 220 32 70 chr13 64979911 64979931 -54764967 + Charlie5 DNA MER1_type 436 455 -2169 1508 240 56 13 chr13 64979934 64980330 -54764568 - MLT1D LTR MaLR 0 505 93 1886 239 48 60 chr13 64980355 64980958 -54763940 + MER77 LTR ERV1 3 598 -7 287 300 12 0 chr13 64980963 64981043 -54763855 - MLT1D LTR MaLR -424 81 1 * 4694 231 108 38 chr13 64981043 64983071 -54761827 + Charlie5 DNA MER1_type 454 2624 0 3879 20 0 0 chr13 64983721 64984169 -54760729 + L1PA3 LINE L1 5698 6145 -10 297 0 0 0 chr13 64984173 64984206 -54760692 + (TA)n Simple_repeat Simple_repeat 1 33 0 2039 215 18 9 chr13 64984491 64984947 -54759951 + MER65C LTR ERV1 1 460 -1 227 196 59 0 chr13 64984954 64985005 -54759893 - LTR40a LTR ERVL 0 519 466 1246 271 41 26 chr13 64985007 64985189 -54759709 - L1ME1 LINE L1 -298 5868 5690 2291 79 6 28 chr13 64985189 64985506 -54759392 - AluSg SINE Alu 0 310 1 1246 271 41 26 chr13 64985506 64985813 -54759085 - L1ME1 LINE L1 -476 5690 5372 346 340 62 38 chr13 64986161 64986370 -54758528 - MLT1L LTR MaLR -55 560 347 676 303 29 5 chr13 64987201 64987409 -54757489 + MER58A DNA MER1_type 12 224 0 189 154 0 0 chr13 64988152 64988191 -54756707 + (TG)n Simple_repeat Simple_repeat 2 40 0 180 0 0 0 chr13 64988382 64988402 -54756496 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 26 98 0 0 chr13 64988584 64988666 -54756232 + AT_rich Low_complexity Low_complexity 1 82 0 1485 122 13 4 chr13 64989372 64989602 -54755296 - AluSq SINE Alu -11 302 71 777 254 108 49 chr13 64989735 64990070 -54754828 + MLT1A1 LTR MaLR 1 457 -10 292 347 75 61 chr13 64990089 64990435 -54754463 + L2 LINE L2 2907 3257 -15 209 338 38 30 chr13 64991692 64991825 -54753073 - L2 LINE L2 -945 2369 2236 2941 184 27 55 chr13 64992716 64993427 -54751471 - LTR8 LTR ERV1 0 691 1 4085 116 24 27 chr13 64993598 64994264 -54750634 + MER4A LTR ERV1 1 664 0 1143 294 65 13 chr13 64994292 64994741 -54750157 - MER76 LTR ERV -4 684 213 480 277 27 62 chr13 64995328 64995552 -54749346 + LTR68 LTR ERV1 525 740 0 2078 113 21 0 chr13 64995862 64996153 -54748745 - AluSp SINE Alu -16 297 1 277 214 0 0 chr13 64997129 64997185 -54747713 - L2 LINE L2 -2 3270 3215 1821 208 54 12 chr13 64997401 64998621 -54746277 + L1MC2 LINE L1 4946 6331 -13 216 326 82 41 chr13 64998896 64999043 -54745855 - L2 LINE L2 -223 3049 2897 1644 216 39 18 chr13 64999516 64999904 -54744994 + MSTD LTR MaLR 1 396 0 5382 246 71 35 chr13 64999906 65001579 -54743319 + MSTD-int LTR MaLR 2 1735 0 1568 240 53 3 chr13 65001579 65001954 -54742944 + MSTD LTR MaLR 1 394 -2 474 292 7 0 chr13 65003730 65003874 -54741024 - L1MC4 LINE L1 -137 7905 7761 299 173 0 0 chr13 65003872 65003924 -54740974 - L1MC4 LINE L1 -753 7289 7238 * 441 273 19 12 chr13 65003895 65004116 -54740782 - L1MC4 LINE L1 -778 7086 6809 233 241 0 0 chr13 65004229 65004283 -54740615 + T-rich Low_complexity Low_complexity 1 54 0 * 313 342 0 33 chr13 65004264 65004448 -54740450 + CT-rich Low_complexity Low_complexity 1 178 0 243 294 15 0 chr13 65004490 65004558 -54740340 + CT-rich Low_complexity Low_complexity 2 70 0 22 0 0 0 chr13 65005071 65005093 -54739805 + AT_rich Low_complexity Low_complexity 1 22 0 456 221 14 126 chr13 65006758 65007004 -54737894 - L1ME2 LINE L1 -16 6146 5924 25 31 0 0 chr13 65007059 65007091 -54737807 + AT_rich Low_complexity Low_complexity 1 32 0 301 346 41 6 chr13 65007374 65007578 -54737320 - L1MEc LINE L1 -863 1713 1520 2077 162 40 24 chr13 65008196 65008616 -54736282 + MSTA LTR MaLR 1 427 -1 3170 96 7 2 chr13 65008661 65009111 -54735787 - L1PA8A LINE L1 -18 6113 5662 6074 129 7 3 chr13 65009211 65010187 -54734711 + L1P LINE L1 2878 3857 -2289 28 48 0 0 chr13 65010278 65010320 -54734578 + AT_rich Low_complexity Low_complexity 1 42 0 303 175 16 0 chr13 65011132 65011195 -54733703 + MLT2F LTR ERVL 10 73 -590 900 107 0 0 chr13 65011212 65011343 -54733555 - L1PB1 LINE L1 -3 6148 6018 760 174 31 0 chr13 65011343 65011504 -54733394 - AluSg/x SINE Alu -15 297 132 245 289 117 45 chr13 65011995 65012438 -54732460 - L1MEc LINE L1 -5052 1153 679 255 288 17 0 chr13 65013237 65013296 -54731602 - MER91A DNA MER1_type -118 78 19 1779 178 71 33 chr13 65014681 65015075 -54729823 - L1MA6 LINE L1 0 6300 5892 1391 170 40 56 chr13 65015077 65015400 -54729498 - L1MA6 LINE L1 -492 5808 5491 369 0 0 0 chr13 65015465 65015506 -54729392 + (TG)n Simple_repeat Simple_repeat 2 42 0 450 255 7 20 chr13 65015506 65015659 -54729239 - L1MA6 LINE L1 -791 5355 5205 867 124 0 0 chr13 65015743 65015864 -54729034 + AluSc SINE Alu 1 121 -188 3918 162 52 24 chr13 65015867 65016793 -54728105 - L1MA6 LINE L1 -942 5204 4253 1450 156 148 4 chr13 65017622 65017892 -54727006 + AluSc SINE Alu 1 309 0 1220 129 0 0 chr13 65017892 65018070 -54726828 + AluSg/x SINE Alu 133 310 -2 22 35 0 0 chr13 65018268 65018297 -54726601 + AT_rich Low_complexity Low_complexity 1 29 0 182 247 200 12 chr13 65018431 65018516 -54726382 + MIR SINE MIR 150 250 -12 23 0 0 0 chr13 65019202 65019225 -54725673 + AT_rich Low_complexity Low_complexity 1 23 0 768 316 66 30 chr13 65020132 65020527 -54724371 - MLT2F LTR ERVL -254 409 1 1005 340 71 16 chr13 65020530 65021109 -54723789 - L2 LINE L2 -1445 1869 1259 278 313 25 0 chr13 65021111 65021191 -54723707 - MER45 DNA AcHobo -1499 82 1 1731 139 7 25 chr13 65023504 65023785 -54721113 - AluSg SINE Alu -32 278 3 828 87 24 0 chr13 65023787 65023913 -54720985 - L1PB1 LINE L1 -116 6035 5907 377 163 31 6 chr13 65023916 65024004 -54720894 - MLT2F LTR ERVL -535 93 5 1173 278 102 31 chr13 65024058 65024479 -54720419 + MLT2F LTR ERVL 87 537 -126 3414 185 67 8 chr13 65024741 65025214 -54719684 - L1MA8 LINE L1 -10 6281 5749 291 93 0 0 chr13 65025214 65025257 -54719641 + (TG)n Simple_repeat Simple_repeat 2 44 0 3414 185 67 8 chr13 65025257 65025511 -54719387 - L1MA8 LINE L1 -542 5749 5511 674 235 32 0 chr13 65025511 65025732 -54719166 + L1M4 LINE L1 4292 4519 -1627 191 100 0 25 chr13 65026336 65026376 -54718522 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 978 350 57 31 chr13 65026700 65027317 -54717581 + L2 LINE L2 1898 2530 -784 2249 108 0 16 chr13 65027370 65027684 -54717214 - AluSg SINE Alu -1 309 1 1281 238 68 23 chr13 65027716 65028281 -54716617 - MLT1E1 LTR MaLR -2 652 1 232 326 44 61 chr13 65028327 65028735 -54716163 + L2 LINE L2 2864 3267 -46 255 133 0 0 chr13 65029215 65029260 -54715638 + (TG)n Simple_repeat Simple_repeat 2 46 0 29 32 0 48 chr13 65030380 65030442 -54714456 + AT_rich Low_complexity Low_complexity 1 59 0 2504 174 26 18 chr13 65030919 65031426 -54713472 - L1PB4 LINE L1 0 6156 5646 2135 133 19 32 chr13 65031426 65031795 -54713103 + THE1B LTR MaLR 1 364 0 10989 116 6 1 chr13 65031795 65033362 -54711536 + THE1B-int LTR MaLR 1 1574 -6 298 130 0 0 chr13 65033382 65033428 -54711470 + THE1B-int LTR MaLR 1529 1574 -6 2244 122 19 32 chr13 65033433 65033802 -54711096 + THE1B LTR MaLR 1 364 0 542 104 0 0 chr13 65033802 65033879 -54711019 - L1PB4 LINE L1 -506 5650 5574 352 376 36 6 chr13 65034085 65034250 -54710648 + L2 LINE L2 2903 3072 -241 307 140 20 0 chr13 65034311 65034361 -54710537 + L2 LINE L2 3263 3313 0 1860 274 54 34 chr13 65034369 65034985 -54709913 - MER92B LTR ERV1 -8 628 1 191 139 256 0 chr13 65035646 65035689 -54709209 - MER5B DNA MER1_type -109 69 16 23 33 0 0 chr13 65037740 65037770 -54707128 + AT_rich Low_complexity Low_complexity 1 30 0 1437 270 48 48 chr13 65037860 65038248 -54706650 - L1ME1 LINE L1 -104 6062 5672 1426 201 35 7 chr13 65038248 65038409 -54706489 - AluJo SINE Alu -15 297 123 432 0 0 0 chr13 65038409 65038457 -54706441 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1426 201 35 7 chr13 65038457 65038584 -54706314 - AluJo SINE Alu -189 123 1 1437 270 48 48 chr13 65038584 65038862 -54706036 - L1ME1 LINE L1 -493 5673 5396 1314 214 8 8 chr13 65038925 65039182 -54705716 + AluJb SINE Alu 35 291 -21 2462 261 95 37 chr13 65039186 65040437 -54704461 - L1ME1 LINE L1 -743 5403 4080 182 284 86 62 chr13 65040543 65040624 -54704274 - MER5B DNA MER1_type -41 137 55 6395 179 23 15 chr13 65040821 65042997 -54701901 + L1PB3 LINE L1 3825 6028 -126 2895 163 14 56 chr13 65042997 65043635 -54701263 - LTR9 LTR ERV1 -1 611 1 6395 179 23 15 chr13 65043635 65043728 -54701170 + L1PB3 LINE L1 6028 6119 -35 218 312 13 0 chr13 65045309 65045386 -54699512 + (CATA)n Simple_repeat Simple_repeat 2 79 0 213 94 0 0 chr13 65045393 65045425 -54699473 + (TG)n Simple_repeat Simple_repeat 1 32 0 3203 142 19 68 chr13 65045463 65046099 -54698799 - MER6A DNA MER2_type 0 605 1 615 254 57 5 chr13 65046152 65046345 -54698553 - MER82 DNA MER2_type -7 646 444 187 349 71 66 chr13 65047117 65047329 -54697569 - L2 LINE L2 -2105 1209 997 1072 138 138 122 chr13 65048276 65048645 -54696253 + MSTA LTR MaLR 1 428 0 418 320 67 0 chr13 65048864 65049042 -54695856 + MIR SINE MIR 73 262 0 351 291 95 53 chr13 65049690 65049975 -54694923 + L1MCa LINE L1 303 599 -6045 5063 190 44 24 chr13 65050339 65051481 -54693417 - L1M4b LINE L1 -5346 1513 349 549 105 0 90 chr13 65051589 65051722 -54693176 + L1MA2 LINE L1 6021 6141 -163 1309 70 0 0 chr13 65051790 65051961 -54692937 + L1MA1 LINE L1 6132 6302 0 1501 234 72 11 chr13 65051962 65052546 -54692352 + L1MCa LINE L1 1189 1807 -4834 2990 227 60 7 chr13 65052974 65053890 -54691008 - L1M1 LINE L1 -3050 4515 3551 351 217 38 38 chr13 65053894 65054000 -54690898 - L1M1 LINE L1 -4060 3506 3401 889 194 29 0 chr13 65054100 65054270 -54690628 + MER7A DNA MER2_type 4 176 -170 577 250 154 0 chr13 65055140 65055360 -54689538 - L1MC4 LINE L1 -180 7862 7609 453 101 63 0 chr13 65055749 65055828 -54689070 - AluY SINE Alu -14 297 214 417 97 0 0 chr13 65055965 65056027 -54688871 + Alu SINE Alu 238 299 -11 2233 79 7 0 chr13 65056321 65056612 -54688286 + AluY SINE Alu 1 293 -18 1606 142 44 34 chr13 65056612 65056908 -54687990 - THE1B LTR MaLR -65 299 1 1977 159 32 0 chr13 65056908 65057280 -54687618 - THE1B-int LTR MaLR 0 1580 1197 369 346 187 27 chr13 65057493 65057970 -54686928 - L3 LINE CR1 -156 1421 1022 2063 102 7 14 chr13 65057970 65058280 -54686618 - AluSg SINE Alu 0 308 1 369 346 187 27 chr13 65058280 65058500 -54686398 - L3 LINE CR1 -555 1022 611 4311 176 64 12 chr13 65058874 65060417 -54684481 - L1MCa LINE L1 -4063 2363 651 409 275 47 0 chr13 65062162 65062311 -54682587 + L1MCb LINE L1 411 566 -5479 1545 252 66 19 chr13 65062397 65062987 -54681911 + L1MCb LINE L1 570 1178 -4867 943 162 76 69 chr13 65063013 65063316 -54681582 + L1M3 LINE L1 5262 5566 -614 546 234 145 37 chr13 65063477 65063857 -54681041 - L1M1 LINE L1 -4228 3337 2917 * 1000 213 31 8 chr13 65063852 65064106 -54680792 + L1 LINE L1 4123 4382 -1764 2340 92 0 22 chr13 65064107 65064423 -54680475 + AluY SINE Alu 1 309 -2 2123 125 3 0 chr13 65064948 65065245 -54679653 - AluSg SINE Alu -12 298 1 216 0 0 0 chr13 65065886 65065910 -54678988 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1626 162 67 9 chr13 65066046 65066361 -54678537 + THE1C LTR MaLR 43 375 0 872 128 6 6 chr13 65066361 65066484 -54678414 + THE1C-int LTR MaLR 1 126 -1454 2244 119 3 0 chr13 65066484 65066794 -54678104 + AluSq SINE Alu 1 311 -2 872 128 6 6 chr13 65066794 65066826 -54678072 + THE1C-int LTR MaLR 125 156 -1424 * 973 73 47 0 chr13 65066823 65066973 -54677925 + THE1C-int LTR MaLR 97 253 -1327 2216 114 0 3 chr13 65067174 65067473 -54677425 - AluSx SINE Alu -14 298 1 1924 74 71 7 chr13 65067479 65067778 -54677120 - AluY SINE Alu 0 316 1 235 281 65 7 chr13 65067804 65067957 -54676941 + L1ME3A LINE L1 5108 5269 -877 530 244 102 82 chr13 65067978 65068477 -54676421 + L1ME3A LINE L1 5338 5841 -329 911 155 84 1 chr13 65068481 65068659 -54676239 + L1MB4 LINE L1 5422 5613 -619 1327 180 35 72 chr13 65068798 65068933 -54675965 - MLT1B LTR MaLR -23 367 228 1722 99 95 14 chr13 65068933 65069216 -54675682 - AluY SINE Alu -3 308 3 1327 180 35 72 chr13 65069216 65069453 -54675445 - MLT1B LTR MaLR -162 228 9 1649 162 36 12 chr13 65069453 65069787 -54675111 + L1MB4 LINE L1 5839 6180 0 1094 235 158 12 chr13 65069839 65070328 -54674570 + L1MCa LINE L1 1893 2452 -3974 612 261 42 53 chr13 65070327 65070673 -54674225 + L1MCa LINE L1 1148 1489 -5118 * 2185 125 0 3 chr13 65070673 65070976 -54673922 + AluSx SINE Alu 1 302 -10 612 261 42 53 chr13 65070976 65071081 -54673817 + L1MCa LINE L1 1489 1594 -5013 23 0 0 0 chr13 65071920 65071943 -54672955 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 65072327 65072349 -54672549 + GC_rich Low_complexity Low_complexity 1 22 0 1326 158 37 61 chr13 65072964 65073390 -54671508 - LTR12 LTR ERV1 -219 2219 1 556 307 123 72 chr13 65073399 65073871 -54671027 - L1MEd LINE L1 -5560 559 64 272 174 43 22 chr13 65074517 65074609 -54670289 + L1MC2 LINE L1 6250 6343 -1 1005 266 53 6 chr13 65074614 65075084 -54669814 + L1MCa LINE L1 2442 2933 -3493 407 268 32 21 chr13 65075088 65075264 -54669634 + L1MEc LINE L1 1491 1671 -4713 2510 72 0 0 chr13 65075264 65075571 -54669327 + AluY SINE Alu 1 307 -4 407 268 32 21 chr13 65075571 65075584 -54669314 + L1MEc LINE L1 1671 1682 -4702 2428 79 14 6 chr13 65075599 65076052 -54668846 - L1P3 LINE L1 -693 5461 5009 1717 180 3 7 chr13 65076202 65076508 -54668390 - AluJb SINE Alu -7 305 1 347 317 54 13 chr13 65077207 65077431 -54667467 - HAL1 LINE L1 -784 1723 1491 346 305 96 5 chr13 65077450 65077637 -54667261 + HAL1 LINE L1 1490 1693 -814 2376 110 0 0 chr13 65079476 65079785 -54665113 - AluY SINE Alu -2 309 1 26 82 0 0 chr13 65080081 65080142 -54664756 + AT_rich Low_complexity Low_complexity 1 61 0 882 82 0 0 chr13 65081669 65081779 -54663119 - AluSq/x SINE Alu -202 110 1 203 336 129 17 chr13 65081851 65082083 -54662815 - L2 LINE L2 -128 3185 2928 847 191 11 21 chr13 65082130 65082318 -54662580 + Tigger6 DNA MER2_type 5 190 -1407 670 227 34 55 chr13 65082458 65082716 -54662182 - L1MD3 LINE L1 0 8042 7803 2292 91 0 0 chr13 65083095 65083392 -54661506 + AluSc SINE Alu 1 297 -12 276 259 35 65 chr13 65083503 65083673 -54661225 - L1MDa LINE L1 -3038 3502 3338 1336 138 42 14 chr13 65084309 65084592 -54660306 + AluSx SINE Alu 1 291 -21 313 214 11 11 chr13 65084787 65084876 -54660022 + A-rich Low_complexity Low_complexity 2 90 0 498 294 11 0 chr13 65084891 65085068 -54659830 + A-rich Low_complexity Low_complexity 1 179 0 6938 68 0 0 chr13 65085594 65086484 -54658414 + L1PA6 LINE L1 5254 6143 -11 414 245 151 9 chr13 65086849 65086955 -54657943 - FLAM_A SINE Alu -12 121 1 263 253 16 82 chr13 65087243 65087437 -54657461 - L1MDa LINE L1 -4499 2041 1861 341 302 75 67 chr13 65087481 65087508 -54657390 - L1MDa LINE L1 -961 1940 1915 2292 87 10 13 chr13 65087508 65087817 -54657081 - AluY SINE Alu -3 308 1 341 302 75 67 chr13 65087817 65088143 -54656755 - L1MDa LINE L1 -986 1915 1578 303 268 56 39 chr13 65088147 65088431 -54656467 - L1MDa LINE L1 -5232 1298 1010 385 226 78 17 chr13 65088936 65089051 -54655847 + MER58B DNA MER1_type 216 337 -4 6577 118 22 78 chr13 65089217 65095516 -54649382 + L1PA7 LINE L1 12 6149 -5 37 62 0 0 chr13 65096247 65096312 -54648586 + AT_rich Low_complexity Low_complexity 1 65 0 827 339 81 36 chr13 65096442 65096861 -54648037 + L1PA16 LINE L1 54 491 -6348 11271 215 29 15 chr13 65096942 65100949 -54643949 + L1PA16 LINE L1 2812 6860 -9 494 318 47 21 chr13 65101126 65101359 -54643539 + MIR SINE MIR 2 240 -22 3673 205 35 29 chr13 65101529 65102038 -54642860 - MER6 DNA MER2_type 0 865 347 258 32 0 0 chr13 65102038 65102069 -54642829 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 3673 205 35 29 chr13 65102069 65102419 -54642479 - MER6 DNA MER2_type -518 347 1 458 381 35 35 chr13 65102425 65102800 -54642098 + L1MC/D LINE L1 5269 5643 -2165 273 303 84 72 chr13 65102839 65103255 -54641643 + L1ME LINE L1 86 506 -5564 2176 116 0 3 chr13 65103814 65104125 -54640773 + AluSg SINE Alu 1 310 0 241 36 71 18 chr13 65104178 65104234 -54640664 + A-rich Low_complexity Low_complexity 3 61 0 395 268 96 54 chr13 65104618 65104762 -54640136 + L1M4 LINE L1 4382 4519 -1627 1922 106 40 17 chr13 65104762 65105064 -54639834 - AluSp SINE Alu -4 309 1 395 268 96 54 chr13 65105064 65105232 -54639666 + L1M4 LINE L1 4519 4707 -1439 681 132 0 121 chr13 65105349 65105523 -54639375 + L1MA8 LINE L1 5948 6100 -191 1779 134 25 0 chr13 65105671 65105948 -54638950 - L1PA11 LINE L1 -40 6134 5851 2653 113 21 21 chr13 65106060 65106483 -54638415 - L1PA11 LINE L1 -338 5836 5414 * 17683 150 41 9 chr13 65106457 65106881 -54638017 - L1PBa LINE L1 -2681 4181 3772 1819 149 43 0 chr13 65106881 65107163 -54637735 - AluSx SINE Alu -18 294 1 17683 150 41 9 chr13 65107163 65110788 -54634110 - L1PBa LINE L1 -3090 3772 1 349 329 75 7 chr13 65110815 65110961 -54633937 - MIR SINE MIR -77 185 30 28 0 0 0 chr13 65111249 65111277 -54633621 + AT_rich Low_complexity Low_complexity 1 28 0 1241 18 36 0 chr13 65111641 65111807 -54633091 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 23 0 0 0 chr13 65112899 65112922 -54631976 + AT_rich Low_complexity Low_complexity 1 23 0 257 296 0 14 chr13 65113187 65113258 -54631640 + (CCG)n Simple_repeat Simple_repeat 3 72 0 216 0 0 0 chr13 65115130 65115154 -54629744 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2075 115 31 0 chr13 65115830 65116117 -54628781 - AluSx SINE Alu -16 296 1 1993 103 0 0 chr13 65116435 65116723 -54628175 + AluY SINE Alu 23 310 0 253 308 159 58 chr13 65117258 65117422 -54627476 - L2 LINE L2 -2244 1070 879 2272 73 3 22 chr13 65117422 65117739 -54627159 + AluY SINE Alu 1 311 0 253 308 159 58 chr13 65117739 65117782 -54627116 - L2 LINE L2 -2435 879 842 311 279 0 49 chr13 65118695 65118817 -54626081 + MIR3 SINE MIR 82 197 -11 27 49 0 0 chr13 65119763 65119804 -54625094 + AT_rich Low_complexity Low_complexity 1 41 0 414 358 109 10 chr13 65120413 65120706 -54624192 - L2 LINE L2 -447 2867 2546 21 0 0 0 chr13 65121135 65121156 -54623742 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 65121421 65121465 -54623433 + AT_rich Low_complexity Low_complexity 1 44 0 221 340 58 10 chr13 65121468 65121571 -54623327 - L2 LINE L2 -50 3222 3115 3771 44 0 0 chr13 65121633 65122092 -54622806 + L1PA4 LINE L1 5694 6152 -3 432 314 113 61 chr13 65122727 65123284 -54621614 + L1M4 LINE L1 4298 4883 -1263 2029 224 81 55 chr13 65123293 65124113 -54620785 + L1MCa LINE L1 846 1686 -4740 432 225 62 0 chr13 65124097 65124226 -54620672 + L1MCa LINE L1 2848 2984 -3442 * 466 303 55 64 chr13 65124292 65124635 -54620263 - MLT1J LTR MaLR -61 450 111 374 321 95 48 chr13 65125709 65126108 -54618790 + L2 LINE L2 1912 2329 -985 25 31 0 0 chr13 65126345 65126377 -54618521 + AT_rich Low_complexity Low_complexity 1 32 0 364 334 53 29 chr13 65126554 65126967 -54617931 - L1ME3A LINE L1 -218 5952 5530 317 337 23 23 chr13 65127548 65127723 -54617175 + L1M4 LINE L1 5201 5375 -771 1212 260 42 17 chr13 65127723 65128246 -54616652 + L1M4 LINE L1 4326 4861 -1285 24 0 0 0 chr13 65128261 65128285 -54616613 + AT_rich Low_complexity Low_complexity 1 24 0 1448 200 7 27 chr13 65128287 65128582 -54616316 - AluJo SINE Alu -19 293 5 700 341 25 6 chr13 65128765 65129079 -54615819 - L1ME1 LINE L1 -1 6165 5846 923 205 62 16 chr13 65129087 65129331 -54615567 - L1MA9 LINE L1 -5 6307 6053 195 184 0 0 chr13 65129648 65129686 -54615212 + (CA)n Simple_repeat Simple_repeat 1 38 0 29 47 0 0 chr13 65129911 65129954 -54614944 + AT_rich Low_complexity Low_complexity 1 43 0 2400 69 0 0 chr13 65130555 65130859 -54614039 - AluY SINE Alu -7 304 1 1614 153 0 4 chr13 65130862 65131123 -54613775 - AluSx SINE Alu -7 305 46 2080 70 19 60 chr13 65131382 65131696 -54613202 + AluY SINE Alu 2 302 -9 1001 219 77 54 chr13 65131736 65132090 -54612808 + MLT1A1 LTR MaLR 1 454 -3 21 36 0 0 chr13 65132149 65132177 -54612721 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 65133225 65133246 -54611652 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 65134958 65134993 -54609905 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 65135886 65135914 -54608984 + AT_rich Low_complexity Low_complexity 1 28 0 183 133 0 0 chr13 65136089 65136119 -54608779 + L2 LINE L2 3243 3272 0 422 334 110 27 chr13 65136637 65137201 -54607697 - L2 LINE L2 -1 3312 2702 879 280 106 37 chr13 65137249 65137739 -54607159 + L1ME3A LINE L1 5644 6167 -3 312 307 134 38 chr13 65137743 65138033 -54606865 - L2 LINE L2 -610 2704 2387 300 257 64 119 chr13 65138066 65138284 -54606614 - L2 LINE L2 -1229 2085 1880 45 0 0 0 chr13 65138804 65138849 -54606049 + AT_rich Low_complexity Low_complexity 1 45 0 1336 231 56 23 chr13 65140730 65141279 -54603619 - MER67C LTR ERV1 -1 513 1 2180 106 0 20 chr13 65141320 65141622 -54603276 - AluSg SINE Alu -14 296 1 2002 134 3 0 chr13 65142009 65142327 -54602571 + AluSx SINE Alu 1 319 0 1020 253 49 19 chr13 65142389 65142730 -54602168 + MLT1A1 LTR MaLR 1 364 -1 6564 199 12 36 chr13 65142733 65143693 -54601205 - ERVL LTR ERVL -131 5633 4652 3475 141 2 2 chr13 65143693 65144217 -54600681 + MER1A DNA MER1_type 1 524 -3 6564 199 12 36 chr13 65144217 65144631 -54600267 - ERVL LTR ERVL -1112 4652 4290 2130 101 17 0 chr13 65144631 65144927 -54599971 - AluSp SINE Alu -12 301 1 6564 199 12 36 chr13 65144927 65144952 -54599946 - ERVL LTR ERVL -1474 4290 4266 3936 147 24 2 chr13 65144942 65145574 -54599324 - ERVL LTR ERVL -2641 3123 2478 * 28 61 0 0 chr13 65146139 65146188 -54598710 + AT_rich Low_complexity Low_complexity 1 49 0 1080 262 57 21 chr13 65146317 65146605 -54598293 + Charlie5 DNA MER1_type 33 342 -2282 5986 213 95 30 chr13 65146605 65148254 -54596644 + MER52A LTR ERV1 1 1755 0 1080 262 57 21 chr13 65148254 65148389 -54596509 + Charlie5 DNA MER1_type 342 471 -2153 936 176 67 9 chr13 65148538 65148748 -54596150 - L1MB2 LINE L1 0 6171 5950 264 30 0 0 chr13 65148748 65148781 -54596117 + (TC)n Simple_repeat Simple_repeat 2 34 0 1206 247 82 0 chr13 65148847 65149203 -54595695 - L1M4 LINE L1 -897 5249 4865 2810 224 60 42 chr13 65149210 65150251 -54594647 + Charlie5 DNA MER1_type 502 1561 -1051 930 234 102 11 chr13 65150314 65150464 -54594434 + Charlie5 DNA MER1_type 2136 2271 -353 2119 114 17 3 chr13 65150464 65150763 -54594135 - AluSx SINE Alu -9 303 1 930 234 102 11 chr13 65150763 65151053 -54593845 + Charlie5 DNA MER1_type 2271 2616 -8 198 224 35 0 chr13 65151315 65151400 -54593498 + CT-rich Low_complexity Low_complexity 1 88 0 257 280 9 47 chr13 65152279 65152386 -54592512 + L2 LINE L2 2272 2374 -940 237 398 24 19 chr13 65152507 65152718 -54592180 + L2 LINE L2 2528 2739 -575 210 250 0 0 chr13 65153571 65153619 -54591279 + L2 LINE L2 3264 3311 -2 21 0 0 0 chr13 65153978 65153999 -54590899 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 65154378 65154399 -54590499 + AT_rich Low_complexity Low_complexity 1 21 0 276 149 0 0 chr13 65154432 65154479 -54590419 + (A)n Simple_repeat Simple_repeat 1 47 0 21 71 0 0 chr13 65154758 65154800 -54590098 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr13 65155439 65155470 -54589428 + AT_rich Low_complexity Low_complexity 1 31 0 282 118 0 20 chr13 65155623 65155674 -54589224 - MLT2A1 LTR ERVL 0 444 395 * 1088 96 6 0 chr13 65155672 65155829 -54589069 - MLT2A1 LTR ERVL -286 158 1 220 202 21 32 chr13 65155836 65155930 -54588968 + GA-rich Low_complexity Low_complexity 2 94 0 442 329 170 28 chr13 65155937 65156478 -54588420 + HAL1 LINE L1 1049 1666 -841 23 33 0 0 chr13 65156778 65156808 -54588090 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr13 65157747 65157786 -54587112 + AT_rich Low_complexity Low_complexity 1 39 0 780 129 43 0 chr13 65158183 65158323 -54586575 - L1PA16 LINE L1 0 6817 6672 7896 176 15 18 chr13 65158374 65160243 -54584655 - L1PA16 LINE L1 -512 6300 4422 5846 155 21 1 chr13 65160276 65161254 -54583644 - L1PA16 LINE L1 -4509 2278 1281 36 77 0 0 chr13 65161423 65161501 -54583397 + AT_rich Low_complexity Low_complexity 1 78 0 949 154 0 6 chr13 65161996 65162158 -54582740 + L1MA4 LINE L1 6131 6291 -9 23 0 0 0 chr13 65162837 65162860 -54582038 + AT_rich Low_complexity Low_complexity 1 23 0 1946 288 62 6 chr13 65164007 65164829 -54580069 + MER63C DNA MER1_type 63 930 0 26 64 0 0 chr13 65165162 65165209 -54579689 + AT_rich Low_complexity Low_complexity 1 47 0 353 322 161 18 chr13 65165625 65165911 -54578987 - L1MEd LINE L1 -2987 3142 2816 475 127 227 0 chr13 65166041 65166151 -54578747 - L1PA16 LINE L1 -4 6162 6028 15563 207 64 21 chr13 65166151 65169674 -54575224 - L1PA16 LINE L1 -79 6790 3417 1728 126 0 0 chr13 65169674 65169928 -54574970 - AluSx SINE Alu -3 309 56 15563 207 64 21 chr13 65169928 65171899 -54572999 - L1PA16 LINE L1 -3452 3417 959 2351 148 82 0 chr13 65171899 65172291 -54572607 - MSTA LTR MaLR -4 424 1 15563 207 64 21 chr13 65172291 65173291 -54571607 - L1PA16 LINE L1 -5910 959 3 21 36 0 0 chr13 65173706 65173734 -54571164 + AT_rich Low_complexity Low_complexity 1 28 0 411 308 97 50 chr13 65174262 65174583 -54570315 - L1M4 LINE L1 -1314 4832 4497 222 91 0 0 chr13 65174741 65174774 -54570124 + (TG)n Simple_repeat Simple_repeat 2 34 0 386 371 46 18 chr13 65174795 65175078 -54569820 - L1M4 LINE L1 -1892 4254 3964 305 329 100 29 chr13 65175316 65175486 -54569412 - L1MEd LINE L1 -4890 1229 1048 23 0 0 0 chr13 65175702 65175725 -54569173 + AT_rich Low_complexity Low_complexity 1 23 0 2113 206 27 8 chr13 65175877 65176352 -54568546 - L1MC3 LINE L1 -295 7490 7007 1780 197 30 38 chr13 65176352 65176913 -54567985 - MLT2A2 LTR ERVL 0 554 1 3138 236 63 16 chr13 65176917 65177853 -54567045 - L1MC3 LINE L1 -779 7006 6027 430 352 121 15 chr13 65178215 65178553 -54566345 - L2 LINE L2 -108 3205 2832 1565 197 27 6 chr13 65178576 65178911 -54565987 - L1M3c LINE L1 -4868 1273 932 21 71 0 0 chr13 65179624 65179666 -54565232 + AT_rich Low_complexity Low_complexity 1 42 0 3270 165 65 15 chr13 65180264 65180882 -54564016 + MER72 LTR ERV1 48 696 -26 225 360 159 24 chr13 65181088 65181427 -54563471 - L2 LINE L2 -480 2834 2450 1330 175 42 33 chr13 65181577 65181912 -54562986 + Tigger2a DNA MER2_type 2 436 -8 1363 165 4 13 chr13 65182280 65182516 -54562382 - AluSx SINE Alu -78 234 1 317 312 40 16 chr13 65182758 65182883 -54562015 + L1 LINE L1 3641 3768 -2378 2034 147 0 0 chr13 65183615 65183927 -54560971 - AluSx SINE Alu 0 312 1 4590 202 47 2 chr13 65184065 65185684 -54559214 - L1PB4 LINE L1 -3 6153 4484 803 201 103 0 chr13 65185797 65185981 -54558917 - Tigger1 DNA MER2_type 0 2418 2216 1225 161 41 0 chr13 65185981 65186316 -54558582 + L1M1 LINE L1 5160 5509 -743 607 243 14 27 chr13 65186317 65186465 -54558433 - Tigger1 DNA MER2_type -2051 367 222 25 51 0 0 chr13 65186702 65186741 -54558157 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr13 65187712 65187749 -54557149 + AT_rich Low_complexity Low_complexity 1 37 0 342 0 0 0 chr13 65188914 65188952 -54555946 + (CA)n Simple_repeat Simple_repeat 2 39 0 29 47 0 0 chr13 65189067 65189110 -54555788 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr13 65189301 65189326 -54555572 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr13 65189624 65189646 -54555252 + (TG)n Simple_repeat Simple_repeat 1 22 0 3307 212 30 1 chr13 65190257 65190983 -54553915 + L1MB8 LINE L1 5432 6178 0 38 22 0 0 chr13 65191111 65191156 -54553742 + AT_rich Low_complexity Low_complexity 1 45 0 511 15 29 0 chr13 65191574 65191642 -54553256 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 21 0 0 0 chr13 65191958 65191979 -54552919 + AT_rich Low_complexity Low_complexity 1 21 0 1107 163 59 8 chr13 65192186 65192425 -54552473 + LTR1 LTR ERV1 1 251 -534 2037 125 34 12 chr13 65192575 65192895 -54552003 + LTR1 LTR ERV1 441 767 -18 22 35 0 0 chr13 65193171 65193200 -54551698 + AT_rich Low_complexity Low_complexity 1 29 0 1357 182 0 91 chr13 65193590 65193931 -54550967 - AluSx SINE Alu -2 310 1 339 132 49 14 chr13 65193982 65194126 -54550772 + (TA)n Simple_repeat Simple_repeat 2 150 0 786 274 0 0 chr13 65194470 65194638 -54550260 - AluJo SINE Alu -23 289 122 4165 207 26 9 chr13 65195152 65195526 -54549372 + MER6 DNA MER2_type -11 355 -510 2703 57 0 8 chr13 65195526 65195877 -54549021 + L1PA7 LINE L1 5807 6154 0 4165 207 26 9 chr13 65195877 65196357 -54548541 + MER6 DNA MER2_type 355 858 -7 23 0 0 0 chr13 65196735 65196758 -54548140 + AT_rich Low_complexity Low_complexity 1 23 0 740 280 14 10 chr13 65197307 65197514 -54547384 + MIR SINE MIR 6 213 -49 25 75 0 0 chr13 65197589 65197642 -54547256 + AT_rich Low_complexity Low_complexity 1 53 0 647 165 0 0 chr13 65197798 65197919 -54546979 - L1MA9 LINE L1 -10 6302 6182 4837 197 42 26 chr13 65198106 65200134 -54544764 - L1MA4 LINE L1 -107 6193 4120 716 320 91 30 chr13 65200109 65200581 -54544317 - L1M2b LINE L1 -5452 1757 1257 * 2590 226 15 7 chr13 65200567 65201108 -54543790 - L1M2b LINE L1 -6664 545 1 11234 162 50 29 chr13 65201133 65203289 -54541609 + Tigger1 DNA MER2_type 219 2418 0 237 365 12 0 chr13 65203505 65203590 -54541308 + L2 LINE L2 3007 3092 -180 26 30 0 0 chr13 65206538 65206571 -54538327 + AT_rich Low_complexity Low_complexity 1 33 0 212 338 80 24 chr13 65207238 65207451 -54537447 - MIR SINE MIR -16 246 22 303 335 39 19 chr13 65207466 65207672 -54537226 + MER63A DNA MER1_type 1 210 0 1356 188 47 112 chr13 65208004 65208388 -54536510 + MLT1A1 LTR MaLR 1 359 -6 343 290 62 40 chr13 65208620 65208844 -54536054 + L1ME LINE L1 737 965 -5105 2567 111 44 2 chr13 65208948 65209380 -54535518 + L1PB3 LINE L1 1603 2052 -4811 12901 207 31 23 chr13 65209384 65209847 -54535051 + L1PB3 LINE L1 2854 3312 -3558 2693 16 0 10 chr13 65209847 65210157 -54534741 + AluYa5 SINE Alu 1 307 -4 12901 207 31 23 chr13 65210157 65213679 -54531219 + L1PB3 LINE L1 3312 6868 -2 225 301 116 15 chr13 65213890 65214089 -54530809 + L1ME LINE L1 1000 1218 -5043 903 62 86 0 chr13 65214090 65214218 -54530680 + MER85 DNA T2_type 1 139 0 192 179 0 0 chr13 65214263 65214302 -54530596 + GA-rich Low_complexity Low_complexity 2 40 0 470 289 79 53 chr13 65214316 65214582 -54530316 + L1ME LINE L1 1275 1547 -4714 243 231 0 31 chr13 65215170 65215235 -54529663 + MLT1J2 LTR MaLR 364 426 -24 22 0 0 0 chr13 65215726 65215748 -54529150 + AT_rich Low_complexity Low_complexity 1 22 0 1574 234 54 19 chr13 65216733 65217161 -54527737 - MLT1D LTR MaLR 0 505 63 392 180 63 9 chr13 65217149 65217260 -54527638 - MER95 LTR ERV -4 427 311 * 1446 168 30 4 chr13 65217484 65217746 -54527152 - MSTA LTR MaLR 0 428 160 234 325 77 0 chr13 65217806 65217923 -54526975 + MLT1L LTR MaLR 448 573 -42 266 377 55 7 chr13 65217981 65218127 -54526771 - L2 LINE L2 -256 3057 2905 560 336 114 38 chr13 65218165 65218799 -54526099 - L2 LINE L2 -480 2834 2153 22 0 0 0 chr13 65218888 65218910 -54525988 + AT_rich Low_complexity Low_complexity 1 22 0 1565 180 6 35 chr13 65219330 65219647 -54525251 + AluJb SINE Alu 3 310 -2 296 189 56 33 chr13 65220295 65220385 -54524513 - MLT1I LTR MaLR -4 405 314 442 254 41 71 chr13 65221177 65221321 -54523577 - MER4C LTR ERV1 0 465 327 1886 162 0 3 chr13 65221321 65221618 -54523280 - AluSq SINE Alu -17 296 1 442 254 41 71 chr13 65221618 65221670 -54523228 - MER4C LTR ERV1 -138 327 275 307 241 0 24 chr13 65221685 65221768 -54523130 - LTR59 LTR ERV1 -171 426 346 * 854 211 17 134 chr13 65221742 65222229 -54522669 - MER4A LTR ERV1 -205 456 3 214 354 10 21 chr13 65222236 65222332 -54522566 + MIR SINE MIR 71 165 -97 21 36 0 0 chr13 65222559 65222587 -54522311 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 65223641 65223673 -54521225 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 65224131 65224159 -54520739 + AT_rich Low_complexity Low_complexity 1 28 0 316 247 12 0 chr13 65224189 65224274 -54520624 - MER92B LTR ERV1 -2 634 549 929 214 23 0 chr13 65224274 65224447 -54520451 - MER7A DNA MER2_type 0 346 170 2142 211 130 71 chr13 65224468 65225198 -54519700 + LTR19C LTR ERV1 7 779 0 788 131 22 29 chr13 65225198 65225324 -54519574 - MER7A DNA MER2_type -206 140 18 2015 116 0 3 chr13 65225621 65225942 -54518956 + AluSq SINE Alu 1 320 0 24 32 0 0 chr13 65226241 65226272 -54518626 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr13 65227016 65227053 -54517845 + AT_rich Low_complexity Low_complexity 1 37 0 225 353 0 0 chr13 65227281 65227349 -54517549 - L2 LINE L2 -2 3270 3203 183 362 0 14 chr13 65229327 65229396 -54515502 + L2 LINE L2 3246 3313 0 247 326 14 49 chr13 65229581 65229725 -54515173 + L1MEc LINE L1 44 182 -6214 1672 188 56 91 chr13 65229938 65230215 -54514683 + MLT1C LTR MaLR 1 255 -212 1529 101 0 0 chr13 65230215 65230424 -54514474 + AluY SINE Alu 94 302 -9 1672 188 56 91 chr13 65230424 65230630 -54514268 + MLT1C LTR MaLR 255 467 0 12869 179 24 5 chr13 65230953 65233320 -54511578 + Tigger1 DNA MER2_type 6 2418 0 281 397 88 15 chr13 65233712 65234120 -54510778 - L2 LINE L2 -453 2861 2424 1607 167 61 25 chr13 65234421 65234781 -54510117 - THE1C LTR MaLR 0 375 3 9363 149 24 8 chr13 65234788 65236336 -54508562 - THE1C-int LTR MaLR -6 1574 3 1802 147 54 35 chr13 65236338 65236706 -54508192 - THE1C LTR MaLR 0 375 1 211 151 47 105 chr13 65236782 65236868 -54508030 + L2 LINE L2 1605 1685 -1629 262 368 82 14 chr13 65237347 65237567 -54507331 - MLT1I LTR MaLR -40 369 135 1085 266 55 33 chr13 65237747 65238108 -54506790 - MLT1A2 LTR MaLR -2 372 4 624 265 60 0 chr13 65238302 65238502 -54506396 - L1ME2 LINE L1 -33 6131 5920 30646 116 13 54 chr13 65238520 65244949 -54499949 - L1PA7 LINE L1 -3 6151 1 328 261 79 45 chr13 65244955 65245275 -54499623 - L1ME2 LINE L1 -262 5902 5562 392 253 0 1 chr13 65245300 65245409 -54499489 - L1ME2 LINE L1 -1413 4733 4626 1928 146 9 29 chr13 65245674 65245989 -54498909 + AluSc SINE Alu 1 309 0 1582 134 3 103 chr13 65246495 65246815 -54498083 + AluSx SINE Alu 1 288 -24 578 158 61 0 chr13 65247275 65247389 -54497509 - L1MB1 LINE L1 0 6168 6048 658 385 52 5 chr13 65248190 65248572 -54496326 + ERVL LTR ERVL 1066 1465 -3531 1623 338 60 28 chr13 65248623 65249184 -54495714 + ERVL LTR ERVL 1585 2189 -2807 1458 279 76 8 chr13 65249184 65249668 -54495230 + LTR40a LTR ERVL 3 519 0 1623 338 60 28 chr13 65249668 65250036 -54494862 + ERVL LTR ERVL 2189 2544 -2452 331 335 77 32 chr13 65250133 65250446 -54494452 + ERVL LTR ERVL 4324 4650 -1114 372 339 43 38 chr13 65250544 65250730 -54494168 + ERVL LTR ERVL 4785 4971 -793 2232 122 37 8 chr13 65250730 65251084 -54493814 - THE1B LTR MaLR 0 364 1 2551 119 42 5 chr13 65251084 65251470 -54493428 - THE1B-int LTR MaLR 0 1580 1181 1972 139 3 19 chr13 65251595 65251905 -54492993 + AluSc SINE Alu 1 305 -4 442 342 105 56 chr13 65253062 65253709 -54491189 + L2 LINE L2 2178 2856 -458 3945 117 34 2 chr13 65255428 65256043 -54488855 + MER41B LTR ERV1 1 635 0 841 172 19 0 chr13 65256320 65256477 -54488421 + LTR8A LTR ERV1 1 160 -567 1462 135 37 0 chr13 65256492 65256737 -54488161 - L1PA14 LINE L1 -3 6158 5905 3685 107 70 45 chr13 65256737 65257313 -54487585 + L1PA14 LINE L1 5198 5796 -365 252 0 0 0 chr13 65257313 65257341 -54487557 + (CATATA)n Simple_repeat Simple_repeat 5 32 0 3685 107 70 45 chr13 65257341 65257453 -54487445 + L1PA14 LINE L1 5796 5904 -257 2575 169 56 58 chr13 65257453 65258004 -54486894 + LTR8 LTR ERV1 138 687 -4 959 324 72 7 chr13 65258038 65258480 -54486418 + L2 LINE L2 2163 2633 -681 29 70 0 0 chr13 65258525 65258582 -54486316 + AT_rich Low_complexity Low_complexity 1 57 0 621 182 100 12 chr13 65258606 65258776 -54486122 - MER58 DNA MER1_type -32 2388 2204 699 273 85 78 chr13 65258885 65259548 -54485350 + L2 LINE L2 2631 3313 0 286 250 12 0 chr13 65259784 65259868 -54485030 + (TA)n Simple_repeat Simple_repeat 1 85 0 310 316 79 14 chr13 65259966 65260105 -54484793 - ERVL LTR ERVL -1015 4749 4602 1971 105 0 51 chr13 65260874 65261189 -54483709 - AluSg SINE Alu -11 299 1 21 36 0 0 chr13 65261619 65261647 -54483251 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 65262383 65262404 -54482494 + AT_rich Low_complexity Low_complexity 1 21 0 3005 62 20 12 chr13 65262471 65262872 -54482026 + MLT2A1 LTR ERVL 1 404 -40 312 143 54 0 chr13 65262872 65262984 -54481914 + (TA)n Simple_repeat Simple_repeat 2 119 0 316 119 0 34 chr13 65262986 65263045 -54481853 + MLT2A1 LTR ERVL 397 453 0 233 160 20 0 chr13 65263616 65263666 -54481232 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 248 233 55 0 chr13 65264868 65264941 -54479957 - MER116 DNA Mariner 0 80 4 192 299 0 93 chr13 65265154 65265261 -54479637 - L2 LINE L2 -4 3309 3213 188 216 20 20 chr13 65265234 65265285 -54479613 - MIR SINE MIR -99 109 59 * 28 0 0 0 chr13 65265996 65266024 -54478874 + AT_rich Low_complexity Low_complexity 1 28 0 591 263 90 0 chr13 65266728 65266884 -54478014 + MER5B DNA MER1_type 7 176 -2 647 336 63 39 chr13 65266953 65267384 -54477514 + L2 LINE L2 2873 3313 0 217 259 0 0 chr13 65268421 65268475 -54476423 + (TA)n Simple_repeat Simple_repeat 2 55 0 2522 232 72 50 chr13 65269287 65270529 -54474369 + L1MCb LINE L1 5 1268 -4952 216 0 0 0 chr13 65270529 65270553 -54474345 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2522 232 72 50 chr13 65270553 65270661 -54474237 + L1MCb LINE L1 1268 1372 -4848 1766 259 86 15 chr13 65270659 65271403 -54473495 - L1M4 LINE L1 -753 5393 4597 * 1111 119 0 0 chr13 65271404 65271555 -54473343 + AluSq SINE Alu 146 296 -17 473 278 45 40 chr13 65271882 65272080 -54472818 + MER57B-int LTR ERV1 6954 7152 -664 487 158 21 36 chr13 65272215 65272335 -54472563 + MER57B-int LTR ERV1 7208 7537 0 1367 96 0 0 chr13 65272335 65272513 -54472385 + MER57B LTR ERV1 3 180 -254 14283 129 17 21 chr13 65272514 65274810 -54470088 - MER57B-int LTR ERV1 -3569 3968 1682 1469 209 12 0 chr13 65274777 65275036 -54469862 - MER57B-int LTR ERV1 -5324 622 361 * 5338 134 11 4 chr13 65275030 65275829 -54469069 - MER57B-int LTR ERV1 -6732 805 1 2526 165 19 5 chr13 65275832 65276257 -54468641 - MER57B LTR ERV1 -3 431 1 245 240 0 0 chr13 65276415 65276465 -54468433 + GA-rich Low_complexity Low_complexity 3 52 0 2148 251 60 35 chr13 65276466 65277343 -54467555 + L1MC2 LINE L1 4416 5314 -832 * 4038 210 48 9 chr13 65277330 65279032 -54465866 + L1PB4 LINE L1 4387 6154 -2 3603 211 71 25 chr13 65279028 65279827 -54465071 + L1MC2 LINE L1 5283 6140 -204 * 2147 110 0 0 chr13 65279827 65280128 -54464770 + AluY SINE Alu 3 303 -8 3603 211 71 25 chr13 65280128 65280342 -54464556 + L1MC2 LINE L1 6140 6343 -1 23 54 0 0 chr13 65280524 65280561 -54464337 + AT_rich Low_complexity Low_complexity 1 37 0 1256 207 57 51 chr13 65280672 65281006 -54463892 + MLT1A1 LTR MaLR 11 346 -19 704 199 111 0 chr13 65282079 65282250 -54462648 - Tigger2 DNA MER2_type 0 2718 2529 5926 78 26 5 chr13 65282253 65283061 -54461837 - L1PA8 LINE L1 -20 6152 5328 387 21 0 0 chr13 65283063 65283110 -54461788 + U2 snRNA snRNA 14 60 -128 * 1328 134 71 8 chr13 65283107 65283361 -54461537 - Tigger2 DNA MER2_type -176 2542 2273 23 86 0 0 chr13 65283433 65283491 -54461407 + AT_rich Low_complexity Low_complexity 1 58 0 249 303 103 58 chr13 65284564 65284719 -54460179 - MIR SINE MIR -56 206 45 1973 66 4 0 chr13 65284739 65284981 -54459917 - AluY SINE Alu -14 297 55 2061 114 10 0 chr13 65285110 65285409 -54459489 + AluSp SINE Alu 1 302 -11 1672 237 108 3 chr13 65285476 65286059 -54458839 + L1M4 LINE L1 4639 5282 -864 31 0 0 0 chr13 65286059 65286090 -54458808 + AT_rich Low_complexity Low_complexity 1 31 0 238 302 78 8 chr13 65286090 65286219 -54458679 + L1ME2 LINE L1 6017 6154 -10 247 289 44 0 chr13 65286369 65286483 -54458415 + L1MC4 LINE L1 7924 8042 0 1949 146 3 13 chr13 65286665 65286980 -54457918 - AluJo SINE Alu 0 312 1 30 45 0 0 chr13 65287084 65287128 -54457770 + AT_rich Low_complexity Low_complexity 1 44 0 1284 231 53 75 chr13 65287506 65287923 -54456975 + MLT1C LTR MaLR 4 411 -56 2463 139 10 0 chr13 65287923 65288318 -54456580 - MER57A LTR ERV1 0 403 5 1284 231 53 75 chr13 65288318 65288367 -54456531 + MLT1C LTR MaLR 411 460 -7 342 320 8 0 chr13 65288371 65288496 -54456402 + (TA)n Simple_repeat Simple_repeat 2 127 0 27 73 0 0 chr13 65289074 65289129 -54455769 + AT_rich Low_complexity Low_complexity 1 55 0 23 68 0 0 chr13 65289236 65289280 -54455618 + AT_rich Low_complexity Low_complexity 1 44 0 34 24 0 0 chr13 65291368 65291409 -54453489 + AT_rich Low_complexity Low_complexity 1 41 0 12796 112 11 4 chr13 65291464 65293419 -54451479 - L1P LINE L1 -1687 4459 2491 5369 122 0 7 chr13 65293417 65294246 -54450652 + L1P LINE L1 4463 5285 -861 * 254 81 0 0 chr13 65294246 65294283 -54450615 - L1P LINE L1 -985 5161 5125 234 270 0 0 chr13 65294373 65294436 -54450462 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 21 0 0 0 chr13 65295338 65295359 -54449539 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 65296952 65296978 -54447920 + AT_rich Low_complexity Low_complexity 1 26 0 1663 181 17 7 chr13 65298975 65299267 -54445631 + AluJo SINE Alu 1 295 -17 2209 110 0 0 chr13 65299278 65299578 -54445320 + AluY SINE Alu 12 311 0 1641 158 25 0 chr13 65299658 65299943 -54444955 + AluSx SINE Alu 5 296 -16 23 0 0 0 chr13 65299943 65299966 -54444932 + AT_rich Low_complexity Low_complexity 1 23 0 5054 186 31 14 chr13 65300142 65301260 -54443638 - L1MA4 LINE L1 -908 5238 4102 5733 115 32 65 chr13 65301267 65301456 -54443442 + L1MA4 LINE L1 5254 5448 -852 2022 137 0 0 chr13 65301456 65301748 -54443150 + AluSx SINE Alu 1 292 -20 297 0 0 0 chr13 65301752 65301785 -54443113 + (TG)n Simple_repeat Simple_repeat 2 34 0 5733 115 32 65 chr13 65301785 65302662 -54442236 + L1MA4 LINE L1 5451 6289 -11 202 158 26 0 chr13 65303240 65303278 -54441620 + (TAA)n Simple_repeat Simple_repeat 1 39 0 306 333 122 11 chr13 65303286 65303466 -54441432 - MIR SINE MIR -48 214 15 24 96 0 0 chr13 65303781 65303854 -54441044 + AT_rich Low_complexity Low_complexity 1 73 0 271 64 21 43 chr13 65304353 65304400 -54440498 + LTR14B LTR ERVK 1 46 -562 * 2034 116 100 24 chr13 65304388 65304758 -54440140 + LTR14B LTR ERVK 211 608 0 4989 81 78 4 chr13 65304758 65305489 -54439409 + HERVK14 LTR ERVK 1 785 -5160 8751 72 13 20 chr13 65305532 65306723 -54438175 + HERV17 LTR ERV1 835 2016 -6610 * 9194 66 47 19 chr13 65306706 65307996 -54436902 + HERV17 LTR ERV1 2430 3754 -4872 1222 40 0 0 chr13 65307975 65308123 -54436775 + HERV17 LTR ERV1 5405 5552 -3074 * 323 62 0 0 chr13 65308124 65308172 -54436726 + HERV17 LTR ERV1 434 481 -8145 5236 79 24 10 chr13 65308172 65308884 -54436014 + HERVK14 LTR ERVK 5038 5759 -186 347 193 5 13 chr13 65308884 65308961 -54435937 + MER41C LTR ERV1 1 61 -493 624 43 70 139 chr13 65308961 65309076 -54435822 + HERVK14 LTR ERVK 5837 5943 -2 1930 102 126 27 chr13 65309082 65309475 -54435423 + LTR14B LTR ERVK 1 608 0 1188 247 119 48 chr13 65309838 65310316 -54434582 + LTR40a LTR ERVL 4 515 -4 1686 194 58 14 chr13 65310328 65310757 -54434141 + L1 LINE L1 4949 5396 -750 1923 120 0 27 chr13 65310758 65311050 -54433848 + AluSg SINE Alu 1 284 -26 194 188 62 0 chr13 65311442 65311490 -54433408 + MIR3 SINE MIR 156 206 -2 21 0 0 0 chr13 65312063 65312084 -54432814 + AT_rich Low_complexity Low_complexity 1 21 0 203 135 0 58 chr13 65312211 65312263 -54432635 + MER5C DNA MER1_type 215 263 -61 28 0 0 0 chr13 65313917 65313945 -54430953 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 65314026 65314058 -54430840 + AT_rich Low_complexity Low_complexity 1 32 0 301 310 110 14 chr13 65315251 65315396 -54429502 - MIR SINE MIR -38 224 66 207 0 0 0 chr13 65316077 65316100 -54428798 + (CA)n Simple_repeat Simple_repeat 2 24 0 302 283 35 0 chr13 65316984 65317157 -54427741 + (TA)n Simple_repeat Simple_repeat 1 179 0 417 265 123 41 chr13 65317283 65317453 -54427445 - MIR SINE MIR -49 213 30 288 0 0 0 chr13 65318647 65318679 -54426219 + (TA)n Simple_repeat Simple_repeat 1 32 0 24 24 0 24 chr13 65318679 65318698 -54426200 + AT_rich Low_complexity Low_complexity 1 19 -22 2517 32 10 10 chr13 65318698 65319009 -54425889 - AluY SINE Alu 0 311 1 24 24 0 24 chr13 65319009 65319031 -54425867 + AT_rich Low_complexity Low_complexity 19 41 0 23 54 0 0 chr13 65319316 65319353 -54425545 + AT_rich Low_complexity Low_complexity 1 37 0 741 262 258 11 chr13 65319672 65320354 -54424544 + L1MD3 LINE L1 6700 7715 -280 216 0 0 0 chr13 65320375 65320399 -54424499 + (A)n Simple_repeat Simple_repeat 1 24 0 1238 274 43 27 chr13 65320399 65320844 -54424054 - MLT1D LTR MaLR -33 472 21 403 216 78 52 chr13 65320896 65320979 -54423919 + L1MD3 LINE L1 7746 7834 -161 2416 102 21 37 chr13 65320979 65321360 -54423538 + THE1C LTR MaLR 1 375 0 403 216 78 52 chr13 65321360 65321392 -54423506 + L1MD3 LINE L1 7834 7864 -131 327 214 220 71 chr13 65321428 65321596 -54423302 + L1MB8 LINE L1 5955 6147 -31 26 30 0 0 chr13 65322119 65322152 -54422746 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr13 65322310 65322348 -54422550 + AT_rich Low_complexity Low_complexity 1 38 0 199 366 20 5 chr13 65322685 65322787 -54422111 + MIR SINE MIR 38 141 -67 22 35 0 0 chr13 65323646 65323675 -54421223 + AT_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chr13 65323693 65323742 -54421156 + AT_rich Low_complexity Low_complexity 1 49 0 1021 324 60 10 chr13 65324074 65324555 -54420343 - LTR40a LTR ERVL 0 519 15 834 266 15 0 chr13 65324561 65324764 -54420134 - HERVL40 LTR ERVL -9 5521 5316 2238 106 0 0 chr13 65325691 65325983 -54418915 - AluSg SINE Alu -18 292 1 1622 307 34 24 chr13 65326034 65326740 -54418158 - HERVL40 LTR ERVL -764 4662 2194 4609 66 3 3 chr13 65326784 65327375 -54417523 - LTR10C LTR ERV1 0 591 1 398 202 46 29 chr13 65327430 65327603 -54417295 + (TA)n Simple_repeat Simple_repeat 2 177 0 3161 290 80 12 chr13 65328330 65329122 -54415776 + L1MB8 LINE L1 45 939 -5920 243 0 0 0 chr13 65329122 65329149 -54415749 + (CA)n Simple_repeat Simple_repeat 1 27 0 3161 290 80 12 chr13 65329149 65329490 -54415408 + L1MB8 LINE L1 939 1255 -5604 557 140 0 0 chr13 65329490 65329583 -54415315 + AluSg/x SINE Alu 213 305 -5 1757 269 38 50 chr13 65329583 65330756 -54414142 + L1MB8 LINE L1 1245 2415 -4544 1947 271 67 23 chr13 65330981 65331925 -54412973 + L1MB8 LINE L1 3011 3995 -2962 * 3819 251 70 33 chr13 65331921 65333518 -54411380 + L1MB8 LINE L1 4550 6206 -751 1344 179 42 4 chr13 65333518 65333758 -54411140 + AluJb SINE Alu 1 249 -63 189 74 0 0 chr13 65333772 65333799 -54411099 + (TC)n Simple_repeat Simple_repeat 2 28 0 285 29 0 0 chr13 65333799 65333833 -54411065 + (CA)n Simple_repeat Simple_repeat 1 34 0 2750 194 26 93 chr13 65333833 65334524 -54410374 + L1MB8 LINE L1 6202 6829 -160 1998 147 3 0 chr13 65334524 65334823 -54410075 - AluSx SINE Alu -12 300 1 2750 194 26 93 chr13 65334823 65334970 -54409928 + L1MB8 LINE L1 6829 6984 -5 333 0 0 0 chr13 65335135 65335172 -54409726 + (TG)n Simple_repeat Simple_repeat 2 38 0 1523 282 25 41 chr13 65335179 65335668 -54409230 - HERVL40 LTR ERVL -2499 3031 2551 501 300 101 82 chr13 65335944 65336311 -54408587 - HERVL40 LTR ERVL -4199 1331 958 2726 158 2 8 chr13 65336370 65336839 -54408059 - L1PA15 LINE L1 -1 6164 5699 797 180 0 67 chr13 65336842 65337036 -54407862 + L1P LINE L1 5105 5285 -861 539 351 20 20 chr13 65337044 65337343 -54407555 - HERVL40 LTR ERVL -4652 878 580 1253 243 36 96 chr13 65337966 65338517 -54406381 - LTR40a LTR ERVL -1 518 1 3949 172 22 13 chr13 65339011 65339726 -54405172 + MER72 LTR ERV1 1 722 0 22 56 0 0 chr13 65340240 65340276 -54404622 + AT_rich Low_complexity Low_complexity 1 36 0 2197 93 3 0 chr13 65340287 65340577 -54404321 + AluSp SINE Alu 21 311 -2 443 330 168 7 chr13 65340739 65341042 -54403856 + L2 LINE L2 1048 1399 -1915 824 266 93 48 chr13 65341831 65341879 -54403019 - MLT1C LTR MaLR 0 467 423 1117 165 22 40 chr13 65341879 65342099 -54402799 + L1MA5A LINE L1 6028 6244 -53 2302 94 0 0 chr13 65342099 65342396 -54402502 + AluY SINE Alu 1 297 -14 1117 165 22 40 chr13 65342396 65342447 -54402451 + L1MA5A LINE L1 6244 6294 -3 824 266 93 48 chr13 65342447 65342838 -54402060 - MLT1C LTR MaLR -44 423 8 2531 68 0 0 chr13 65342938 65343249 -54401649 + AluY SINE Alu 1 311 0 344 274 53 0 chr13 65343701 65343814 -54401084 - L1MC3 LINE L1 -1085 6700 6582 1041 249 71 43 chr13 65343929 65344366 -54400532 - L1MD3 LINE L1 -1391 6604 6156 364 264 182 0 chr13 65344878 65345037 -54399861 - MER3 DNA MER1_type -21 188 1 203 200 0 22 chr13 65345063 65345108 -54399790 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 723 284 47 34 chr13 65345414 65345735 -54399163 + LTR40b LTR ERVL 135 459 -3 1407 254 88 59 chr13 65345740 65346300 -54398598 + MLT1E2 LTR MaLR 78 626 0 2018 254 81 22 chr13 65346751 65347421 -54397477 + L1ME3A LINE L1 5450 6158 -12 205 71 0 48 chr13 65347523 65347565 -54397333 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr13 65347620 65347643 -54397255 + AT_rich Low_complexity Low_complexity 1 23 0 2331 94 0 0 chr13 65348155 65348463 -54396435 - AluY SINE Alu -3 308 1 397 270 50 6 chr13 65349364 65349523 -54395375 - L1MD3 LINE L1 -1885 5923 5758 5992 204 166 41 chr13 65349682 65351242 -54393656 - MER52A LTR ERV1 0 1755 1 1935 127 0 34 chr13 65351255 65351547 -54393351 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr13 65351550 65351582 -54393316 + (TAA)n Simple_repeat Simple_repeat 2 33 0 256 303 55 67 chr13 65351739 65351904 -54392994 + MER63A DNA MER1_type 46 208 -2 299 335 18 48 chr13 65351907 65352074 -54392824 + MIR SINE MIR 36 197 -65 182 367 46 41 chr13 65352283 65352479 -54392419 + L2 LINE L2 2048 2244 -1070 1404 189 54 27 chr13 65352867 65353164 -54391734 - AluJo SINE Alu -7 305 1 199 398 78 47 chr13 65353188 65353316 -54391582 + L2 LINE L2 3123 3254 -18 221 369 0 0 chr13 65353351 65353435 -54391463 + L3 LINE CR1 1487 1570 -7 210 368 174 5 chr13 65354087 65354288 -54390610 - L3 LINE CR1 -1029 548 314 1464 146 76 7 chr13 65354888 65355176 -54389722 - MER34B LTR ERV1 -29 536 229 5024 246 60 37 chr13 65355183 65356352 -54388546 - MLT1A1-int LTR MaLR -296 1439 230 2204 90 3 0 chr13 65356352 65356640 -54388258 + AluSp SINE Alu 9 297 -16 5024 246 60 37 chr13 65356640 65356876 -54388022 - MLT1A1-int LTR MaLR -1505 230 1 1186 197 75 69 chr13 65356876 65357237 -54387661 - MLT1A1 LTR MaLR 0 365 3 601 378 45 31 chr13 65357450 65358161 -54386737 - ERVL LTR ERVL -1723 4041 3321 303 324 39 28 chr13 65358317 65358496 -54386402 + L2 LINE L2 3113 3293 -20 253 361 8 42 chr13 65358836 65358955 -54385943 - L2 LINE L2 -22 3291 3177 476 249 30 78 chr13 65359595 65359864 -54385034 + L1MC4 LINE L1 6448 6703 -1339 212 200 18 0 chr13 65359867 65359922 -54384976 + (TA)n Simple_repeat Simple_repeat 1 56 0 434 214 30 7 chr13 65359996 65360094 -54384804 + L1MC4a LINE L1 6705 6767 -1041 258 56 0 0 chr13 65360094 65360130 -54384768 + (TG)n Simple_repeat Simple_repeat 2 37 0 434 214 30 7 chr13 65360130 65360163 -54384735 + L1MC4a LINE L1 6767 6798 -1010 387 167 0 0 chr13 65360273 65360363 -54384535 + A-rich Low_complexity Low_complexity 1 90 0 1871 172 3 0 chr13 65360718 65361015 -54383883 + AluSx SINE Alu 1 298 -14 748 235 48 30 chr13 65361015 65362113 -54382785 + L1MC3 LINE L1 707 1992 -4434 251 208 107 16 chr13 65362447 65362611 -54382287 + MER52C LTR ERV1 1198 1276 -2 635 205 179 15 chr13 65362646 65362909 -54381989 + L1MC3 LINE L1 2166 2471 -3955 304 200 0 0 chr13 65362931 65362986 -54381912 + L1MA4A LINE L1 3 57 -6792 7933 183 39 38 chr13 65363127 65365106 -54379792 - L1 LINE L1 -3775 3073 1094 1255 130 0 0 chr13 65365106 65365283 -54379615 - THE1C LTR MaLR 0 375 199 1940 140 24 111 chr13 65365290 65365845 -54379053 - THE1C-int LTR MaLR -1029 551 1 2164 150 13 11 chr13 65365845 65366219 -54378679 - THE1C LTR MaLR 0 375 1 836 269 22 37 chr13 65366219 65366487 -54378411 - L1 LINE L1 -5751 1098 835 6892 202 19 53 chr13 65366610 65368488 -54376410 + L1MA4A LINE L1 4199 6012 -836 249 111 0 56 chr13 65368490 65368562 -54376336 + (TAA)n Simple_repeat Simple_repeat 1 68 0 829 173 16 71 chr13 65368573 65368845 -54376053 + L1MA4A LINE L1 6016 6241 -635 2063 169 28 39 chr13 65368951 65369419 -54375479 + L1MA4A LINE L1 6533 6995 -10 536 290 60 10 chr13 65369452 65369766 -54375132 + L1MC3 LINE L1 2478 2807 -3619 26 19 7 0 chr13 65369858 65369931 -54374967 + AT_rich Low_complexity Low_complexity 1 33 0 195 156 13 26 chr13 65369954 65370031 -54374867 + (TTATA)n Simple_repeat Simple_repeat 4 79 0 207 213 43 11 chr13 65370078 65370172 -54374726 + (TA)n Simple_repeat Simple_repeat 1 97 0 688 273 61 34 chr13 65370191 65370697 -54374201 + L1MC3 LINE L1 3099 3618 -2808 * 14053 220 22 18 chr13 65370681 65374826 -54370072 + L1P4 LINE L1 1613 5770 -395 21 0 0 0 chr13 65374833 65374854 -54370044 + AT_rich Low_complexity Low_complexity 1 21 0 5567 119 4 0 chr13 65375042 65376420 -54368478 - L1PA10 LINE L1 -108 6060 4679 4500 123 11 4 chr13 65376422 65377124 -54367774 + L1PA10 LINE L1 3988 4694 -1452 2040 171 56 0 chr13 65377124 65377496 -54367402 + L1PA15 LINE L1 5770 6165 0 21 0 0 0 chr13 65377510 65377531 -54367367 + AT_rich Low_complexity Low_complexity 1 21 0 2600 271 38 46 chr13 65377533 65378915 -54365983 + L1MC3 LINE L1 4165 5536 -890 493 253 55 60 chr13 65378981 65379163 -54365735 + MLT1C LTR MaLR 72 252 -215 1038 181 99 9 chr13 65379166 65379398 -54365500 + L1M1 LINE L1 1905 2157 -5408 820 256 22 22 chr13 65379399 65379626 -54365272 + MLT1C LTR MaLR 241 467 0 5600 233 39 46 chr13 65379635 65381451 -54363447 + L1MC3 LINE L1 5536 7338 -727 2231 113 0 10 chr13 65381471 65381782 -54363116 + AluSx SINE Alu 1 308 -4 966 247 66 47 chr13 65383394 65383854 -54361044 + MLT2B1 LTR ERVL 1 516 -4 23 54 0 0 chr13 65384405 65384442 -54360456 + AT_rich Low_complexity Low_complexity 1 37 0 33 66 0 0 chr13 65384492 65384553 -54360345 + AT_rich Low_complexity Low_complexity 1 61 0 21 57 0 0 chr13 65385125 65385160 -54359738 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 65385323 65385352 -54359546 + AT_rich Low_complexity Low_complexity 1 29 0 839 301 181 13 chr13 65385846 65386466 -54358432 - L2 LINE L2 0 3313 2581 205 125 161 0 chr13 65387122 65387178 -54357720 + L2 LINE L2 3247 3311 -2 22 0 0 0 chr13 65387577 65387599 -54357299 + AT_rich Low_complexity Low_complexity 1 22 0 358 192 13 0 chr13 65387759 65387837 -54357061 - MER53 DNA DNA 0 189 111 32 57 0 0 chr13 65388079 65388132 -54356766 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr13 65388531 65388559 -54356339 + AT_rich Low_complexity Low_complexity 1 28 0 347 349 5 26 chr13 65389610 65389802 -54355096 + MLT1I LTR MaLR 3 190 -219 274 238 12 36 chr13 65389895 65389979 -54354919 + MLT1I LTR MaLR 320 401 -8 225 369 29 19 chr13 65390957 65391163 -54353735 - Charlie8 DNA MER1_type -2180 237 30 569 228 95 26 chr13 65391344 65391533 -54353365 + MIR SINE MIR 57 258 -4 286 308 75 25 chr13 65392041 65392161 -54352737 + MIR SINE MIR 20 145 -117 195 191 0 24 chr13 65392235 65392277 -54352621 + MIR SINE MIR 166 206 -56 23 0 0 0 chr13 65393461 65393484 -54351414 + AT_rich Low_complexity Low_complexity 1 23 0 279 200 38 12 chr13 65393598 65393678 -54351220 + (TA)n Simple_repeat Simple_repeat 1 82 0 2174 167 11 49 chr13 65394947 65395419 -54349479 - MER101B LTR ERV1 0 570 117 2202 188 14 31 chr13 65396142 65396627 -54348271 + MER31A LTR ERV1 1 477 -8 1369 157 8 0 chr13 65397154 65397396 -54347502 + L1MA2 LINE L1 6061 6304 0 22 0 0 0 chr13 65397517 65397539 -54347359 + AT_rich Low_complexity Low_complexity 1 22 0 2141 105 3 0 chr13 65397791 65398085 -54346813 + AluSc SINE Alu 9 303 -6 314 309 161 36 chr13 65398190 65398413 -54346485 - HAL1b LINE L1 -809 539 289 6418 43 22 1 chr13 65398413 65399218 -54345680 - L1PA5 LINE L1 0 6154 5333 2030 236 34 27 chr13 65399224 65399472 -54345426 - L1MC3 LINE L1 -8 7777 7532 203 32 65 0 chr13 65399472 65399503 -54345395 + T-rich Low_complexity Low_complexity 2 34 0 2030 236 34 27 chr13 65399503 65399515 -54345383 - L1MC3 LINE L1 -253 7532 7522 1888 139 0 0 chr13 65399515 65399781 -54345117 - AluSg SINE Alu -44 266 1 2030 236 34 27 chr13 65399781 65400116 -54344782 - L1MC3 LINE L1 -263 7522 7177 233 257 14 27 chr13 65400116 65400190 -54344708 + MLT2D LTR ERVL 1 73 -341 * 387 275 16 18 chr13 65400181 65400310 -54344588 + MLT2B1 LTR ERVL 240 456 -40 697 269 90 0 chr13 65400355 65400567 -54344331 - L1MC3 LINE L1 -1118 6667 6437 500 386 23 7 chr13 65401163 65401444 -54343454 + L2 LINE L2 2730 3013 -300 248 212 0 0 chr13 65401479 65401545 -54343353 - L1MA3 LINE L1 0 6305 6240 428 280 131 34 chr13 65401565 65401740 -54343158 + L2 LINE L2 3121 3312 -1 256 354 90 21 chr13 65401971 65402115 -54342783 - L2 LINE L2 0 3313 3160 641 293 33 9 chr13 65402270 65402485 -54342413 - ERVL LTR ERVL -3808 1956 1737 3271 267 21 25 chr13 65402766 65403818 -54341080 - L1P LINE L1 -3459 2687 1640 27 81 0 0 chr13 65403824 65403886 -54341012 + AT_rich Low_complexity Low_complexity 1 62 0 271 310 7 21 chr13 65403988 65404133 -54340765 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 27 0 0 0 chr13 65404617 65404644 -54340254 + AT_rich Low_complexity Low_complexity 1 27 0 204 316 0 25 chr13 65405549 65405628 -54339270 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 23 33 0 0 chr13 65405824 65405854 -54339044 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 65408347 65408377 -54336521 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr13 65408476 65408500 -54336398 + AT_rich Low_complexity Low_complexity 1 24 0 365 264 9 38 chr13 65408541 65408647 -54336251 + MLT1A1 LTR MaLR 160 262 -103 1912 159 0 0 chr13 65410110 65410412 -54334486 - AluY SINE Alu -9 302 1 734 136 14 75 chr13 65412725 65412872 -54332026 + MLT1A1 LTR MaLR 1 138 -227 1733 66 0 0 chr13 65466006 65466218 -54278680 + AluSg/x SINE Alu 90 301 -11 521 200 29 0 chr13 65468060 65468165 -54276733 - L1MC1 LINE L1 0 6333 6226 684 232 40 0 chr13 65468187 65468325 -54276573 - L1M4 LINE L1 -1227 4919 4782 4805 162 9 18 chr13 65468325 65469200 -54275698 - L1MC1 LINE L1 -171 6162 4736 1573 84 8 34 chr13 65469204 65469442 -54275456 - L1PA7 LINE L1 -4 6150 5919 1707 206 35 8 chr13 65469837 65470234 -54274664 + MLT2B1 LTR ERVL 8 460 -55 201 74 0 0 chr13 65470234 65470261 -54274637 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 13334 111 16 1 chr13 65470503 65470958 -54273940 - L1P LINE L1 -2175 3971 3524 270 0 0 0 chr13 65470958 65470988 -54273910 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 13334 111 16 1 chr13 65470988 65472556 -54272342 - L1P LINE L1 -2622 3524 1918 9364 90 23 11 chr13 65472555 65473332 -54271566 + L1P3 LINE L1 3977 4744 -1428 * 198 0 0 0 chr13 65473332 65473354 -54271544 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9364 90 23 11 chr13 65473354 65474218 -54270680 + L1P3 LINE L1 4744 5622 -550 1013 211 33 113 chr13 65474861 65475197 -54269701 + MLT1D LTR MaLR 195 503 -2 2174 268 70 66 chr13 65475204 65476370 -54268528 + L1MC4 LINE L1 6500 7669 -373 24 32 0 0 chr13 65476391 65476422 -54268476 + AT_rich Low_complexity Low_complexity 1 31 0 11701 139 9 13 chr13 65477649 65479700 -54265198 - L1P LINE L1 -1357 4789 2747 321 330 75 37 chr13 65480291 65480640 -54264258 - L1MC4 LINE L1 -551 7491 7130 1965 267 36 30 chr13 65481092 65481831 -54263067 + L1M4 LINE L1 4568 5311 -835 7248 110 14 21 chr13 65481833 65483243 -54261655 + L1P3 LINE L1 735 2153 -4308 47 92 0 0 chr13 65483380 65483511 -54261387 + AT_rich Low_complexity Low_complexity 1 131 0 47 19 0 0 chr13 65483615 65483669 -54261229 + AT_rich Low_complexity Low_complexity 1 54 0 228 259 35 17 chr13 65483821 65483937 -54260961 + (TA)n Simple_repeat Simple_repeat 2 119 0 230 122 0 61 chr13 65484454 65484503 -54260395 + LTR66 LTR ERVL 395 440 -170 1086 203 35 86 chr13 65484660 65485056 -54259842 - MER67D LTR ERV1 -4 510 200 3246 119 14 50 chr13 65485056 65485620 -54259278 + L1PA12 LINE L1 5625 6168 0 1086 203 35 86 chr13 65485620 65485811 -54259087 - MER67D LTR ERV1 -314 200 1 380 323 167 19 chr13 65486511 65486876 -54258022 - L2 LINE L2 -688 2626 2208 2227 108 3 0 chr13 65487005 65487300 -54257598 - AluSp SINE Alu -17 296 1 23 0 0 0 chr13 65487509 65487532 -54257366 + AT_rich Low_complexity Low_complexity 1 23 0 313 303 118 40 chr13 65489332 65489484 -54255414 - MLT1H1 LTR MaLR -191 364 201 2221 114 0 10 chr13 65490675 65490973 -54253925 - AluSx SINE Alu -17 295 1 195 42 0 0 chr13 65491059 65491083 -54253815 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 294 348 140 17 chr13 65492786 65493022 -54251876 - L2 LINE L2 -866 2448 2184 1434 219 0 29 chr13 65493025 65493336 -54251562 - AluJo SINE Alu -10 302 1 29 0 0 0 chr13 65493384 65493413 -54251485 + AT_rich Low_complexity Low_complexity 1 29 0 409 304 94 23 chr13 65493413 65493584 -54251314 - MIR SINE MIR -69 193 11 629 359 52 17 chr13 65493638 65494000 -54250898 - L2 LINE L2 -1178 2136 1762 1736 171 68 31 chr13 65494082 65494467 -54250431 - MSTA LTR MaLR 0 428 30 431 289 29 0 chr13 65494442 65494546 -54250352 + MLT1E2 LTR MaLR 231 337 -289 * 1724 106 12 16 chr13 65494546 65494791 -54250107 + AluY SINE Alu 47 290 -21 1007 123 0 53 chr13 65494791 65494961 -54249937 - THE1B LTR MaLR -200 164 4 26 50 0 0 chr13 65495203 65495243 -54249655 + AT_rich Low_complexity Low_complexity 1 40 0 201 154 0 0 chr13 65495922 65495961 -54248937 + (CA)n Simple_repeat Simple_repeat 1 39 0 21 57 0 0 chr13 65495980 65496015 -54248883 + AT_rich Low_complexity Low_complexity 1 35 0 237 333 36 27 chr13 65496286 65496397 -54248501 - MER5A DNA MER1_type -28 161 50 2336 169 35 0 chr13 65497590 65497993 -54246905 - MER47B DNA MER2_type 0 418 2 2346 57 3 10 chr13 65498104 65498403 -54246495 + AluY SINE Alu 1 297 -14 1349 175 4 19 chr13 65498536 65498805 -54246093 - L1M2 LINE L1 -491 5809 5545 34 42 0 0 chr13 65498805 65498853 -54246045 + AT_rich Low_complexity Low_complexity 1 48 0 4287 159 32 51 chr13 65498857 65500071 -54244827 - L1M2 LINE L1 -681 5610 4426 27 0 0 0 chr13 65501521 65501548 -54243350 + AT_rich Low_complexity Low_complexity 1 27 0 861 209 17 61 chr13 65501956 65502186 -54242712 + AluJo SINE Alu 85 304 -8 2140 139 3 0 chr13 65503097 65503406 -54241492 - AluSq SINE Alu -3 310 1 23 68 0 0 chr13 65503875 65503919 -54240979 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr13 65504004 65504027 -54240871 + AT_rich Low_complexity Low_complexity 1 23 0 1296 278 44 40 chr13 65504063 65504559 -54240339 - MLT1D LTR MaLR -7 498 1 24 0 0 0 chr13 65504561 65504585 -54240313 + AT_rich Low_complexity Low_complexity 1 24 0 729 314 75 4 chr13 65505115 65505395 -54239503 - L1ME1 LINE L1 -7 6159 5860 1367 109 43 0 chr13 65505395 65505605 -54239293 - L1PA11 LINE L1 0 6174 5956 210 175 25 0 chr13 65505927 65505967 -54238931 + CT-rich Low_complexity Low_complexity 2 42 0 694 292 73 84 chr13 65506017 65507105 -54237793 - Charlie7 DNA MER1_type -1202 1410 335 2181 97 3 0 chr13 65507683 65507973 -54236925 - AluSg SINE Alu -9 301 11 26 74 0 0 chr13 65509286 65509340 -54235558 + AT_rich Low_complexity Low_complexity 1 54 0 2158 154 42 13 chr13 65510284 65510661 -54234237 - MER61D LTR ERV1 0 501 114 23 0 0 0 chr13 65511184 65511207 -54233691 + AT_rich Low_complexity Low_complexity 1 23 0 2340 156 72 8 chr13 65511266 65511752 -54233146 - L1MA9 LINE L1 0 6312 5796 619 304 6 0 chr13 65511756 65511927 -54232971 - MER70B LTR ERVL -317 261 90 * 805 238 0 6 chr13 65511926 65512086 -54232812 - MER70A LTR ERVL -313 159 1 3217 211 53 48 chr13 65512155 65513147 -54231751 + L1 LINE L1 2932 3928 -2218 292 211 0 0 chr13 65513403 65513455 -54231443 + LTR40c LTR ERVL 161 212 -253 1535 154 94 25 chr13 65513492 65513939 -54230959 + pTR5 LTR ERV1 740 1217 -1221 265 207 0 17 chr13 65513939 65513997 -54230901 - MLT1B LTR MaLR -333 57 1 2237 95 0 0 chr13 65514095 65514403 -54230495 - AluSx SINE Alu 0 308 1 585 90 0 0 chr13 65514996 65515107 -54229791 - AluY SINE Alu 0 315 205 1715 176 146 8 chr13 65515375 65515751 -54229147 + MSTA LTR MaLR 1 428 0 2305 78 0 10 chr13 65516014 65516322 -54228576 - AluY SINE Alu -6 305 1 1682 154 185 6 chr13 65516363 65516726 -54228172 - MSTA LTR MaLR 0 428 1 23 33 0 0 chr13 65516813 65516843 -54228055 + AT_rich Low_complexity Low_complexity 1 30 0 315 228 51 0 chr13 65517145 65517224 -54227674 + MLT1G LTR MaLR 1 83 -512 725 284 120 61 chr13 65517251 65517680 -54227218 + MLT1G LTR MaLR 81 577 -13 1689 197 0 7 chr13 65517820 65518129 -54226769 - AluJb SINE Alu -3 309 3 2609 180 34 13 chr13 65518448 65518975 -54225923 + MER34 LTR ERV1 4 541 -1 496 168 5 63 chr13 65519628 65519819 -54225079 + GA-rich Low_complexity Low_complexity 1 180 0 424 267 74 19 chr13 65519902 65520207 -54224691 + L1ME2 LINE L1 5644 5967 -197 408 333 68 0 chr13 65521549 65521711 -54223187 - MIR SINE MIR -4 258 86 198 136 0 0 chr13 65521732 65521776 -54223122 + (TA)n Simple_repeat Simple_repeat 2 45 0 42 48 0 0 chr13 65522097 65522160 -54222738 + AT_rich Low_complexity Low_complexity 1 63 0 285 248 71 57 chr13 65523790 65523931 -54220967 - MLT1J LTR MaLR -330 181 39 23 0 0 0 chr13 65525303 65525326 -54219572 + AT_rich Low_complexity Low_complexity 1 23 0 361 315 68 14 chr13 65526112 65526258 -54218640 + MER91B DNA MER1_type 9 162 -28 8116 51 9 1 chr13 65526458 65527503 -54217395 - L1PA5 LINE L1 -1960 4186 3134 9384 43 3 6 chr13 65527503 65529506 -54215392 + L1PA5 LINE L1 4170 6146 -8 1050 211 51 75 chr13 65529775 65530107 -54214791 + MLT1A1 LTR MaLR 42 365 0 1324 242 60 14 chr13 65531543 65531890 -54213008 + MLT1A1 LTR MaLR 1 363 -2 1167 231 55 60 chr13 65532232 65532596 -54212302 + MLT1A2 LTR MaLR 1 362 -12 23 0 0 0 chr13 65532809 65532832 -54212066 + AT_rich Low_complexity Low_complexity 1 23 0 773 86 0 17 chr13 65532834 65533100 -54211798 + AluY SINE Alu 1 308 -3 3336 147 71 3 chr13 65533102 65533695 -54211203 + Tigger3(Golem) DNA MER2_type 2395 3027 -2 210 302 0 23 chr13 65533713 65533799 -54211099 + (ATTAG)n Simple_repeat Simple_repeat 4 87 0 697 263 116 0 chr13 65533818 65534008 -54210890 - MER58A DNA MER1_type -12 212 1 33 66 0 0 chr13 65534118 65534179 -54210719 + AT_rich Low_complexity Low_complexity 1 61 0 340 278 125 21 chr13 65534862 65535006 -54209892 - MIR SINE MIR -85 177 19 22 35 0 0 chr13 65536645 65536674 -54208224 + AT_rich Low_complexity Low_complexity 1 29 0 37 0 0 0 chr13 65537647 65537684 -54207214 + AT_rich Low_complexity Low_complexity 1 37 0 343 286 127 7 chr13 65538083 65538247 -54206651 - MIR SINE MIR -66 142 9 281 159 16 0 chr13 65538646 65538709 -54206189 + (TA)n Simple_repeat Simple_repeat 2 65 0 27 29 0 0 chr13 65540173 65540207 -54204691 + AT_rich Low_complexity Low_complexity 1 34 0 418 315 44 30 chr13 65540472 65540824 -54204074 - L1MC/D LINE L1 -577 5585 5272 1201 221 0 5 chr13 65540835 65541048 -54203850 - MER58A DNA MER1_type -6 218 7 22 103 0 0 chr13 65541708 65541786 -54203112 + AT_rich Low_complexity Low_complexity 1 78 0 253 165 13 51 chr13 65542354 65542433 -54202465 + CT-rich Low_complexity Low_complexity 3 78 0 21 71 0 0 chr13 65542686 65542728 -54202170 + AT_rich Low_complexity Low_complexity 1 42 0 2134 110 0 0 chr13 65542873 65543174 -54201724 + AluSg SINE Alu 1 301 -9 356 351 35 6 chr13 65543277 65543448 -54201450 + L2 LINE L2 836 1011 -2303 239 280 121 45 chr13 65543495 65543627 -54201271 + L2 LINE L2 1164 1305 -2009 833 262 57 37 chr13 65543730 65544131 -54200767 + Charlie4a DNA MER1_type 16 424 -84 473 330 55 58 chr13 65544199 65544544 -54200354 + L2 LINE L2 1381 1724 -1590 345 315 123 10 chr13 65544540 65544743 -54200155 + L2 LINE L2 3083 3308 -5 * 619 241 63 6 chr13 65545035 65545193 -54199705 + MER45A DNA AcHobo 12 178 0 948 262 152 53 chr13 65547105 65547559 -54197339 + MLT1D LTR MaLR 7 505 0 185 133 0 0 chr13 65547627 65547657 -54197241 - L2 LINE L2 -226 3046 3017 1496 228 0 3 chr13 65547936 65548225 -54196673 - AluJo SINE Alu -24 288 1 1668 206 38 8 chr13 65549508 65549904 -54194994 + MLT2B1 LTR ERVL 8 460 -55 201 74 0 0 chr13 65549904 65549931 -54194967 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 13379 111 16 1 chr13 65550172 65550627 -54194271 - L1P LINE L1 -2175 3971 3524 270 0 0 0 chr13 65550627 65550657 -54194241 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 13379 111 16 1 chr13 65550657 65552225 -54192673 - L1P LINE L1 -2622 3524 1918 9479 89 4 7 chr13 65552224 65552998 -54191900 + L1PA7 LINE L1 3977 4752 -1402 * 198 0 0 0 chr13 65552998 65553020 -54191878 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9479 89 4 7 chr13 65553020 65554430 -54190468 + L1PA7 LINE L1 4752 6154 0 497 271 36 14 chr13 65554517 65554657 -54190241 - MER45A DNA AcHobo -3 175 33 216 0 0 0 chr13 65554714 65554738 -54190160 + (TC)n Simple_repeat Simple_repeat 2 25 0 285 210 0 0 chr13 65554738 65554800 -54190098 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 23 33 0 0 chr13 65554880 65554910 -54189988 + AT_rich Low_complexity Low_complexity 1 30 0 186 118 0 0 chr13 65554913 65554947 -54189951 + (GA)n Simple_repeat Simple_repeat 1 34 0 2132 111 40 3 chr13 65558235 65558533 -54186365 + AluSc SINE Alu 1 309 0 442 323 57 10 chr13 65558989 65559181 -54185717 - MIR SINE MIR -8 254 54 5925 164 29 5 chr13 65559283 65560227 -54184671 - L1PA7 LINE L1 -11 6143 5191 2922 88 17 0 chr13 65560227 65560645 -54184253 + L1PA7 LINE L1 5728 6152 -2 232 212 95 175 chr13 65560816 65561005 -54183893 + MLT1F-int LTR MaLR 1085 1258 -113 379 297 108 57 chr13 65561093 65561609 -54183289 + MLT1F LTR MaLR 1 553 -2 22 56 0 0 chr13 65561729 65561765 -54183133 + AT_rich Low_complexity Low_complexity 1 36 0 290 319 62 21 chr13 65561894 65562038 -54182860 - LTR65 LTR ERV1 -6 663 514 2021 171 3 12 chr13 65562178 65562518 -54182380 + MER2 DNA MER2_type 1 337 -8 546 270 43 0 chr13 65562564 65562727 -54182171 - LTR65 LTR ERV1 -499 170 1 1799 144 10 24 chr13 65562862 65563154 -54181744 + AluJb SINE Alu 1 288 -24 1001 211 37 97 chr13 65563264 65563644 -54181254 - MLT1A2 LTR MaLR -17 357 1 423 267 198 4 chr13 65564841 65565073 -54179825 + HAL1 LINE L1 1485 1761 -746 881 305 55 31 chr13 65565899 65566352 -54178546 - LTR16B LTR ERVL 0 464 1 426 257 14 35 chr13 65566732 65566876 -54178022 - HERV16 LTR ERVL -303 4693 4553 280 269 23 54 chr13 65567221 65567351 -54177547 - HERV16 LTR ERVL -684 4312 4187 252 292 15 0 chr13 65567386 65567451 -54177447 + MLT1E1 LTR MaLR 2 67 -587 1182 277 24 70 chr13 65567646 65568101 -54176797 + MLT1E1 LTR MaLR 221 654 0 734 349 17 7 chr13 65568105 65568403 -54176495 - HERV16 LTR ERVL -1195 4459 4159 207 0 0 0 chr13 65569495 65569518 -54175380 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2312 128 11 19 chr13 65569738 65570105 -54174793 + THE1B LTR MaLR 1 364 0 7737 122 50 2 chr13 65570105 65571466 -54173432 + THE1B-int LTR MaLR 1 1647 -4 2388 127 5 19 chr13 65571475 65571844 -54173054 + THE1B LTR MaLR 1 364 0 903 350 39 7 chr13 65571927 65572333 -54172565 - HERV16 LTR ERVL -2760 2236 1818 338 307 74 68 chr13 65572568 65572744 -54172154 + MER5A DNA MER1_type 7 183 -6 235 307 78 39 chr13 65572756 65572935 -54171963 + MLT1J2 LTR MaLR 265 450 0 270 153 0 0 chr13 65573194 65573253 -54171645 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1792 132 0 4 chr13 65574273 65574531 -54170367 + AluSg SINE Alu 23 279 -31 2082 137 0 0 chr13 65575143 65575450 -54169448 + AluSg SINE Alu 2 308 -2 30 27 0 0 chr13 65575570 65575607 -54169291 + AT_rich Low_complexity Low_complexity 1 37 0 286 270 45 0 chr13 65576490 65576579 -54168319 - MER5A DNA MER1_type -86 103 11 241 309 49 60 chr13 65577729 65578079 -54166819 - L1MC5 LINE L1 -62 7899 7554 614 308 117 24 chr13 65578346 65578863 -54166035 - L1MC5 LINE L1 -770 7191 6669 27 62 0 0 chr13 65578893 65578941 -54165957 + AT_rich Low_complexity Low_complexity 1 48 0 2064 82 11 0 chr13 65579230 65579500 -54165398 - AluY SINE Alu -7 304 32 24 53 0 0 chr13 65579550 65579588 -54165310 + AT_rich Low_complexity Low_complexity 1 38 0 442 269 60 0 chr13 65579757 65579924 -54164974 - L1MC5 LINE L1 -2023 5785 5609 445 129 35 12 chr13 65579938 65580023 -54164875 - L1MC1 LINE L1 0 6333 6247 2382 74 0 0 chr13 65580045 65580356 -54164542 - AluY SINE Alu 0 311 1 1511 241 85 42 chr13 65580356 65580957 -54163941 - L1MC5 LINE L1 -938 5208 4582 1235 201 112 4 chr13 65580989 65581257 -54163641 - AluJo SINE Alu -15 297 1 310 317 103 33 chr13 65581268 65581539 -54163359 - L1MC/D LINE L1 -2264 5544 5255 4978 197 14 23 chr13 65581631 65582679 -54162219 - L1MA8 LINE L1 0 6291 5267 1410 193 0 40 chr13 65582679 65582979 -54161919 - AluJb SINE Alu -14 288 1 4978 197 14 23 chr13 65582979 65583784 -54161114 - L1MA8 LINE L1 -1024 5267 4457 * 5818 99 12 50 chr13 65583760 65584866 -54160032 - L1PB1 LINE L1 0 6151 5082 * 7800 225 76 22 chr13 65584862 65585145 -54159753 - L1PB1 LINE L1 -1647 5918 5652 5410 159 23 33 chr13 65585145 65586227 -54158671 + MER11C LTR ERVK 1 1071 0 7800 225 76 22 chr13 65586227 65586341 -54158557 - L1PB1 LINE L1 -1913 5652 5546 1798 149 23 10 chr13 65586341 65586643 -54158255 + AluSp SINE Alu 1 306 -7 7800 225 76 22 chr13 65586643 65587191 -54157707 - L1PB1 LINE L1 -2019 5546 5029 1911 146 3 0 chr13 65587191 65587479 -54157419 + AluSx SINE Alu 10 298 -14 7800 225 76 22 chr13 65587479 65589256 -54155642 - L1PB1 LINE L1 -2536 5029 3045 451 136 242 23 chr13 65589260 65589392 -54155506 - MER4C LTR ERV1 -27 438 278 376 125 31 0 chr13 65589404 65589468 -54155430 - MER4A LTR ERV1 -233 431 366 1846 269 104 20 chr13 65589482 65590428 -54154470 - L1PB1 LINE L1 -4533 3032 2008 1558 252 56 84 chr13 65590450 65591042 -54153856 - L1PB1 LINE L1 -6449 1040 466 2470 248 73 33 chr13 65592209 65593157 -54151741 - L1MCa LINE L1 -5030 1015 68 1623 184 13 3 chr13 65593157 65593462 -54151436 - AluJb SINE Alu -4 308 1 2470 248 73 33 chr13 65593462 65593533 -54151365 - L1MCa LINE L1 -5977 68 1 22 35 0 0 chr13 65593669 65593698 -54151200 + AT_rich Low_complexity Low_complexity 1 29 0 213 282 78 78 chr13 65594366 65594508 -54150390 + MIR3 SINE MIR 3 144 -64 21 0 0 0 chr13 65594801 65594822 -54150076 + AT_rich Low_complexity Low_complexity 1 21 0 2010 124 0 0 chr13 65595015 65595321 -54149577 - AluSx SINE Alu 0 308 3 345 314 65 6 chr13 65595706 65595875 -54149023 + MLT1J2 LTR MaLR 39 217 -233 31 96 0 0 chr13 65596151 65596245 -54148653 + AT_rich Low_complexity Low_complexity 1 94 0 31 44 0 0 chr13 65596488 65596533 -54148365 + AT_rich Low_complexity Low_complexity 1 45 0 317 215 11 0 chr13 65596689 65596782 -54148116 + CT-rich Low_complexity Low_complexity 2 95 0 25 0 0 0 chr13 65598777 65598802 -54146096 + AT_rich Low_complexity Low_complexity 1 25 0 972 40 0 8 chr13 65598808 65598932 -54145966 - L1PA6 LINE L1 -9 6145 6023 906 199 22 62 chr13 65599245 65599471 -54145427 - MER20 DNA MER1_type 0 219 3 1799 95 4 15 chr13 65600597 65600998 -54143900 + L1PA8 LINE L1 5899 6296 0 534 103 0 0 chr13 65601399 65601477 -54143421 + (TA)n Simple_repeat Simple_repeat 2 79 0 5985 106 34 11 chr13 65601608 65602908 -54141990 - L1PA13 LINE L1 -5 6158 4855 192 125 0 0 chr13 65604278 65604310 -54140588 + (CA)n Simple_repeat Simple_repeat 1 32 0 1643 212 87 40 chr13 65604524 65605020 -54139878 + LTR40a LTR ERVL 1 519 0 463 266 131 68 chr13 65605082 65605570 -54139328 - Charlie2a DNA MER1_type -1813 1049 531 417 123 0 0 chr13 65605862 65605927 -54138971 + (TG)n Simple_repeat Simple_repeat 1 65 0 307 257 20 10 chr13 65606012 65606113 -54138785 + (TA)n Simple_repeat Simple_repeat 1 102 0 243 203 0 0 chr13 65606131 65606190 -54138708 + (TA)n Simple_repeat Simple_repeat 1 59 0 21 36 0 0 chr13 65609303 65609331 -54135567 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 65609389 65609412 -54135486 + AT_rich Low_complexity Low_complexity 1 23 0 196 323 123 43 chr13 65611626 65611926 -54132972 - L3 LINE CR1 -177 1400 1077 777 204 96 9 chr13 65612126 65612346 -54132552 + L1MB2 LINE L1 5924 6162 -9 7931 164 49 16 chr13 65612698 65614189 -54130709 + L1PA15-16 LINE L1 709 2198 -4651 2907 142 20 8 chr13 65614189 65614697 -54130201 + L1PA16 LINE L1 5653 6166 0 784 181 32 26 chr13 65614698 65614853 -54130045 + AluJo SINE Alu 127 282 -30 297 51 0 0 chr13 65614856 65614895 -54130003 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 24 32 0 0 chr13 65614898 65614929 -54129969 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr13 65615870 65615905 -54128993 + AT_rich Low_complexity Low_complexity 1 35 0 5066 151 43 25 chr13 65616188 65617295 -54127603 - L1MA6 LINE L1 0 6300 5158 545 287 250 19 chr13 65618350 65618774 -54126124 - MLT1G1 LTR MaLR -6 589 42 236 318 19 9 chr13 65619350 65619457 -54125441 - L2 LINE L2 -54 3259 3152 1336 174 27 164 chr13 65619845 65619984 -54124914 - MER67C LTR ERV1 -243 271 328 2508 126 0 0 chr13 65619984 65620348 -54124550 - THE1B LTR MaLR 0 364 1 1336 174 27 164 chr13 65620348 65620628 -54124270 - MER67C LTR ERV1 -185 329 12 241 206 38 60 chr13 65620712 65620850 -54124048 + (TA)n Simple_repeat Simple_repeat 1 136 -44 1759 189 70 24 chr13 65620850 65621263 -54123635 - MSTB1 LTR MaLR 0 432 1 241 206 38 60 chr13 65621263 65621308 -54123590 + (TA)n Simple_repeat Simple_repeat 136 180 0 1841 184 18 9 chr13 65621417 65621753 -54123145 + MER2 DNA MER2_type 1 339 -6 239 301 32 11 chr13 65621764 65621857 -54123041 - MIR SINE MIR -108 154 60 40 21 0 0 chr13 65621961 65622008 -54122890 + AT_rich Low_complexity Low_complexity 1 47 0 4365 57 17 53 chr13 65622160 65623245 -54121653 + MER11A LTR ERVK 1 1266 0 558 183 63 8 chr13 65623578 65623704 -54121194 + LTR54B LTR ERV1 1 133 -365 216 0 0 0 chr13 65623737 65623761 -54121137 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5027 154 21 29 chr13 65623831 65624726 -54120172 - MER49 LTR ERV1 -33 890 3 574 179 65 30 chr13 65624728 65624896 -54120002 + LTR54B LTR ERV1 213 386 -112 412 210 0 40 chr13 65624902 65625002 -54119896 + MER57A-int LTR ERV1 7441 7536 -1 779 198 34 128 chr13 65625034 65625332 -54119566 + MER57A LTR ERV1 68 337 -66 267 237 26 13 chr13 65625320 65625396 -54119502 + LTR54 LTR ERV1 432 508 -2 * 186 43 0 0 chr13 65625547 65625570 -54119328 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 234 294 175 17 chr13 65626240 65626417 -54118481 - MIR SINE MIR 0 262 58 386 281 59 22 chr13 65626658 65626951 -54117947 - MLT1F LTR MaLR -1 530 227 180 0 0 0 chr13 65628573 65628593 -54116305 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1639 160 14 28 chr13 65628596 65628883 -54116015 - AluSg SINE Alu -27 283 1 180 0 0 0 chr13 65628989 65629009 -54115889 + (CTCA)n Simple_repeat Simple_repeat 2 21 0 366 42 0 0 chr13 65629099 65629147 -54115751 + (TG)n Simple_repeat Simple_repeat 1 48 0 3285 214 73 19 chr13 65629613 65630713 -54114185 - L1MB1 LINE L1 -8 6160 5005 26 0 0 0 chr13 65630719 65630745 -54114153 + AT_rich Low_complexity Low_complexity 1 26 0 332 250 24 0 chr13 65630745 65630829 -54114069 - L1MB1 LINE L1 -1317 4829 4744 1885 179 29 0 chr13 65630829 65631175 -54113723 - MER46B DNA MER2_type 0 236 6 2011 226 65 25 chr13 65631179 65631812 -54113086 - L1MB1 LINE L1 -1395 4751 4094 360 151 0 0 chr13 65631812 65631865 -54113033 + Alu SINE Alu 1 53 -249 1094 280 92 36 chr13 65631871 65632553 -54112345 + L1M3de LINE L1 912 1781 -4522 1669 264 59 45 chr13 65632564 65633132 -54111766 + L1M3de LINE L1 1843 2401 -3981 342 0 0 0 chr13 65633132 65633170 -54111728 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1669 264 59 45 chr13 65633170 65633713 -54111185 + L1M3de LINE L1 2401 2983 -3399 890 332 16 51 chr13 65633795 65634217 -54110681 + L1M3d LINE L1 17 685 -5206 304 288 56 46 chr13 65634264 65634415 -54110483 + L1M3d LINE L1 257 672 -5219 355 307 7 21 chr13 65634558 65634698 -54110200 + L1M3d LINE L1 664 801 -5100 282 200 0 0 chr13 65634705 65634755 -54110143 + Tigger1 DNA MER2_type 2369 2418 0 21 36 0 0 chr13 65635446 65635474 -54109424 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 65635730 65635754 -54109144 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 65636101 65636121 -54108777 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2789 168 24 0 chr13 65636121 65636622 -54108276 - L1MA6 LINE L1 -6 6294 5782 488 133 70 0 chr13 65636622 65636765 -54108133 + (TA)n Simple_repeat Simple_repeat 2 154 0 2695 134 4 22 chr13 65636767 65637229 -54107669 - L1MA6 LINE L1 -509 5791 5338 322 158 89 50 chr13 65637802 65637903 -54106995 - L1MA8 LINE L1 -4 6287 6183 272 149 0 0 chr13 65637903 65637950 -54106948 - MADE1 DNA Mariner -33 47 1 469 196 10 0 chr13 65637950 65638052 -54106846 - L1MA8 LINE L1 -158 6133 6031 387 41 0 0 chr13 65638052 65638101 -54106797 + (TG)n Simple_repeat Simple_repeat 2 50 0 1416 180 32 39 chr13 65638104 65638387 -54106511 - AluJo SINE Alu -31 281 1 239 291 0 0 chr13 65639034 65639113 -54105785 + HsTC2 DNA Tc2 1 79 -1819 255 61 0 0 chr13 65639610 65639643 -54105255 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 1185 204 9 0 chr13 65639869 65640094 -54104804 - AluJb SINE Alu -31 281 55 1665 80 13 4 chr13 65640457 65640683 -54104215 + AluY SINE Alu 1 228 -83 204 40 0 0 chr13 65640694 65640719 -54104179 + (A)n Simple_repeat Simple_repeat 1 25 0 386 307 84 30 chr13 65640898 65641100 -54103798 - MIR SINE MIR -40 222 10 21 36 0 0 chr13 65643248 65643276 -54101622 + AT_rich Low_complexity Low_complexity 1 28 0 343 311 11 0 chr13 65643730 65643820 -54101078 - L2 LINE L2 -4 3309 3219 21 36 0 0 chr13 65643820 65643848 -54101050 + AT_rich Low_complexity Low_complexity 1 28 0 42 0 0 0 chr13 65643970 65644012 -54100886 + AT_rich Low_complexity Low_complexity 1 42 0 334 256 116 8 chr13 65644209 65644330 -54100568 + L1MC1 LINE L1 3085 3218 -2928 2035 134 14 0 chr13 65644337 65644628 -54100270 + AluSx SINE Alu 1 295 -17 2146 237 36 5 chr13 65644647 65645281 -54099617 + L1MC1 LINE L1 4334 4987 -1159 1757 190 13 13 chr13 65645331 65645647 -54099251 - MER1B DNA MER1_type -1 338 23 961 216 6 0 chr13 65645643 65645824 -54099074 - MER1B DNA MER1_type -115 182 1 * 4930 177 54 33 chr13 65645828 65645967 -54098931 + L1MC1 LINE L1 5263 5398 -935 1332 138 26 11 chr13 65645967 65646235 -54098663 + L1MA8 LINE L1 6019 6290 -1 4930 177 54 33 chr13 65646235 65647144 -54097754 + L1MC1 LINE L1 5398 6333 0 279 320 141 8 chr13 65647921 65648049 -54096849 + MIR SINE MIR 88 232 -30 1097 89 0 6 chr13 65648287 65648444 -54096454 - L1PA11 LINE L1 -1 6173 6018 25 51 0 0 chr13 65648745 65648784 -54096114 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr13 65649327 65649351 -54095547 + AT_rich Low_complexity Low_complexity 1 24 0 203 231 31 0 chr13 65649654 65649719 -54095179 + (TA)n Simple_repeat Simple_repeat 2 68 0 194 0 39 0 chr13 65650934 65650960 -54093938 + (TA)n Simple_repeat Simple_repeat 2 28 0 304 274 0 60 chr13 65651694 65651778 -54093120 + MIR SINE MIR 3 81 -181 585 307 28 14 chr13 65651786 65652004 -54092894 + MIR SINE MIR 4 224 -38 258 105 0 0 chr13 65652029 65652067 -54092831 + (TG)n Simple_repeat Simple_repeat 1 38 0 285 149 0 0 chr13 65652067 65652134 -54092764 + (GA)n Simple_repeat Simple_repeat 2 68 0 3504 319 131 25 chr13 65652224 65654388 -54090510 - L2 LINE L2 -1 3312 917 979 129 0 0 chr13 65654388 65654528 -54090370 + AluSg/x SINE Alu 154 293 -17 417 371 65 14 chr13 65654529 65654820 -54090078 - L2 LINE L2 -2388 926 621 236 163 23 0 chr13 65655126 65655169 -54089729 - MER6 DNA MER2_type -372 493 450 2260 200 50 27 chr13 65655169 65655644 -54089254 - MER6 DNA MER2_type -378 487 2 192 325 51 43 chr13 65656160 65656277 -54088621 + L2 LINE L2 2776 2893 -421 295 318 142 34 chr13 65656301 65656540 -54088358 + L2 LINE L2 3016 3280 -33 21 0 0 0 chr13 65656550 65656571 -54088327 + AT_rich Low_complexity Low_complexity 1 21 0 193 362 21 0 chr13 65656643 65656737 -54088161 - MIR SINE MIR -67 141 46 253 271 74 25 chr13 65656996 65657118 -54087780 + MLT1L LTR MaLR 426 553 -62 243 244 0 0 chr13 65657261 65657306 -54087592 + (TG)n Simple_repeat Simple_repeat 2 46 0 2217 112 52 11 chr13 65657448 65657796 -54087102 - THE1B LTR MaLR -2 362 1 255 31 0 0 chr13 65657910 65657942 -54086956 + (TG)n Simple_repeat Simple_repeat 1 32 0 1538 103 5 0 chr13 65659246 65659460 -54085438 - AluSg SINE Alu -93 217 3 1678 209 61 14 chr13 65660659 65661104 -54083794 - L1MD3 LINE L1 -12 7983 7518 895 313 67 34 chr13 65661856 65662304 -54082594 + L1M2 LINE L1 13 475 -6374 289 360 67 34 chr13 65662473 65662651 -54082247 + L1M2 LINE L1 773 956 -5893 232 364 12 6 chr13 65663186 65663348 -54081550 + L1PA15-16 LINE L1 1401 1563 -5286 298 284 20 10 chr13 65663348 65663450 -54081448 + L1PA15-16 LINE L1 1472 1574 -5275 * 4906 251 26 20 chr13 65663425 65665789 -54079109 + L1PA15-16 LINE L1 1335 4792 -2057 204 135 0 0 chr13 65666423 65666460 -54078438 + (TA)n Simple_repeat Simple_repeat 1 37 0 426 276 26 33 chr13 65666463 65666615 -54078283 - L1MC4 LINE L1 -1340 6702 6552 275 239 91 11 chr13 65667869 65667957 -54076941 - MIR SINE MIR -46 216 122 243 333 0 0 chr13 65669019 65669091 -54075807 + MER58A DNA MER1_type 1 72 -152 218 398 93 6 chr13 65669387 65669548 -54075350 - MIR3 SINE MIR -4 204 30 260 289 67 37 chr13 65669556 65669691 -54075207 + L2 LINE L2 3175 3313 0 631 289 34 29 chr13 65669977 65670185 -54074713 + MER58A DNA MER1_type 1 209 -15 1127 260 78 106 chr13 65670185 65670275 -54074623 + L1MC4 LINE L1 5978 6069 -1973 2012 125 27 0 chr13 65670275 65670570 -54074328 + AluSx SINE Alu 1 303 -9 1127 260 78 106 chr13 65670570 65671106 -54073792 + L1MC4 LINE L1 6069 6618 -1424 1917 213 136 40 chr13 65671106 65671701 -54073197 + MER82 DNA MER2_type 2 653 0 1127 260 78 106 chr13 65671701 65671883 -54073015 + L1MC4 LINE L1 6618 6804 -1238 2371 81 3 0 chr13 65671883 65672193 -54072705 - AluY SINE Alu 0 311 1 1127 260 78 106 chr13 65672193 65672425 -54072473 + L1MC4 LINE L1 6804 7002 -1040 616 236 54 43 chr13 65672428 65672708 -54072190 + Charlie1 DNA MER1_type 2454 2736 -25 337 250 67 0 chr13 65673122 65673226 -54071672 - MER103 DNA DNA -47 119 9 206 315 0 0 chr13 65674005 65674059 -54070839 + (CATA)n Simple_repeat Simple_repeat 2 55 0 448 376 19 0 chr13 65674119 65674324 -54070574 + MIR SINE MIR 28 236 -26 570 284 25 59 chr13 65675661 65675777 -54069121 + LTR16A1 LTR ERVL 207 312 -145 2313 88 3 0 chr13 65675777 65676082 -54068816 + AluSc SINE Alu 1 306 -3 570 284 25 59 chr13 65676082 65676204 -54068694 + LTR16A1 LTR ERVL 312 437 -20 558 322 83 8 chr13 65677248 65677490 -54067408 + MIR SINE MIR 2 261 -1 241 273 102 70 chr13 65677878 65678006 -54066892 - L2 LINE L2 0 3313 3182 189 304 0 0 chr13 65678475 65678521 -54066377 + MIR SINE MIR 216 261 -1 201 241 0 0 chr13 65678925 65678979 -54065919 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 3776 124 64 42 chr13 65679080 65679848 -54065050 - LTR1 LTR ERV1 0 785 1 297 89 0 0 chr13 65681196 65681241 -54063657 + (CA)n Simple_repeat Simple_repeat 1 45 0 1732 197 0 3 chr13 65681300 65681604 -54063294 + AluJo SINE Alu 1 303 -9 391 340 61 44 chr13 65681666 65682010 -54062888 - L2 LINE L2 -1 3312 2963 277 302 84 58 chr13 65682291 65682516 -54062382 - L2 LINE L2 -716 2598 2368 367 299 92 18 chr13 65682562 65682779 -54062119 - L2 LINE L2 -1199 2115 1883 313 235 88 29 chr13 65683203 65683339 -54061559 + L1ME4a LINE L1 5739 5882 -239 27 0 0 0 chr13 65683579 65683606 -54061292 + AT_rich Low_complexity Low_complexity 1 27 0 312 27 0 0 chr13 65683822 65683859 -54061039 + (TG)n Simple_repeat Simple_repeat 2 38 0 305 271 0 0 chr13 65683869 65683939 -54060959 + L1MC4 LINE L1 6616 6685 -1357 26 30 0 0 chr13 65684050 65684083 -54060815 + AT_rich Low_complexity Low_complexity 1 33 0 1785 177 85 3 chr13 65684271 65684661 -54060237 + L1MC3 LINE L1 7352 7773 -12 183 42 0 0 chr13 65684669 65684693 -54060205 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 491 299 23 35 chr13 65684708 65684882 -54060016 + L1PA13 LINE L1 788 959 -6615 268 345 44 0 chr13 65684913 65685026 -54059872 + L1PA13 LINE L1 1044 1161 -6413 225 378 0 0 chr13 65685405 65685503 -54059395 + L1PA13 LINE L1 2083 2180 -5401 4198 256 28 19 chr13 65685739 65687426 -54057472 + L1PA13 LINE L1 2183 3892 -3692 1053 127 0 0 chr13 65687445 65687611 -54057287 + (TA)n Simple_repeat Simple_repeat 1 166 0 30 27 0 0 chr13 65688940 65688977 -54055921 + AT_rich Low_complexity Low_complexity 1 37 0 354 289 60 28 chr13 65689099 65689348 -54055550 + HAL1 LINE L1 1404 1660 -847 1773 188 36 0 chr13 65690473 65690802 -54054096 + MER2 DNA MER2_type 3 343 -1 1030 250 69 29 chr13 65691779 65692113 -54052785 - LTR52 LTR ERVL -44 377 27 1904 218 14 0 chr13 65692113 65692558 -54052340 + L1MA4 LINE L1 5844 6294 -6 1030 250 69 29 chr13 65692558 65692571 -54052327 - LTR52 LTR ERVL -394 27 16 4549 137 65 15 chr13 65694163 65695588 -54049310 + L1PA16 LINE L1 4686 6157 -9 23 0 0 0 chr13 65695603 65695626 -54049272 + AT_rich Low_complexity Low_complexity 1 23 0 223 341 59 0 chr13 65696858 65696943 -54047955 - MIR SINE MIR -165 97 8 279 292 62 10 chr13 65696989 65697085 -54047813 - LTR37B LTR ERV1 -334 134 34 264 243 40 14 chr13 65697173 65697247 -54047651 - MER31-int LTR ERV1 -745 4191 4116 298 349 8 16 chr13 65697388 65697517 -54047381 - MER31-int LTR ERV1 -888 4048 3921 242 254 154 73 chr13 65698461 65698571 -54046327 + L2 LINE L2 3154 3272 0 27 29 0 0 chr13 65698758 65698792 -54046106 + AT_rich Low_complexity Low_complexity 1 34 0 258 32 0 0 chr13 65699148 65699179 -54045719 + (TG)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chr13 65699228 65699261 -54045637 + AT_rich Low_complexity Low_complexity 1 33 0 484 161 71 18 chr13 65699905 65700017 -54044881 + L1M3e LINE L1 1 118 -6912 4001 83 0 45 chr13 65700017 65700269 -54044629 - MER41A LTR ERV1 0 554 292 6179 18 0 3 chr13 65700269 65700982 -54043916 - L1PA3 LINE L1 -3 6152 5442 4001 83 0 45 chr13 65700982 65701309 -54043589 - MER41A LTR ERV1 -262 292 1 4900 235 47 100 chr13 65701324 65703195 -54041703 + L1M3e LINE L1 137 1694 -5413 1762 184 3 0 chr13 65703195 65703488 -54041410 + AluSx SINE Alu 1 294 -18 4900 235 47 100 chr13 65703488 65704590 -54040308 + L1M3e LINE L1 1694 2852 -4255 1634 194 42 15 chr13 65704590 65704727 -54040171 + MER2 DNA MER2_type 1 133 -212 3150 140 18 4 chr13 65704727 65705234 -54039664 - MER75 DNA T2_type 0 514 1 1634 194 42 15 chr13 65705234 65705431 -54039467 + MER2 DNA MER2_type 133 344 -1 12648 213 35 31 chr13 65705451 65706446 -54038452 + L1MA10 LINE L1 3068 4058 -3695 2122 102 6 32 chr13 65706446 65706760 -54038138 - AluY SINE Alu -5 306 1 12648 213 35 31 chr13 65706760 65707485 -54037413 + L1MA10 LINE L1 4058 4779 -2974 1566 123 5 0 chr13 65707485 65707704 -54037194 - AluSq SINE Alu -18 295 76 12648 213 35 31 chr13 65707704 65710466 -54034432 + L1MA10 LINE L1 4779 7749 -4 386 263 75 70 chr13 65710533 65710719 -54034179 - LTR16C LTR ERVL 0 491 305 2113 270 181 34 chr13 65711305 65712314 -54032584 - L1MC4 LINE L1 -152 7890 6733 376 248 10 10 chr13 65712322 65712423 -54032475 - L1MC4 LINE L1 -1475 6567 6467 1888 69 0 30 chr13 65712461 65712723 -54032175 - AluY SINE Alu -2 309 56 3653 158 88 36 chr13 65714480 65715265 -54029633 + LTR1B LTR ERV1 1 826 0 2030 139 0 0 chr13 65715376 65715671 -54029227 - AluSx SINE Alu -17 295 1 492 111 0 0 chr13 65715936 65716017 -54028881 + (TG)n Simple_repeat Simple_repeat 2 82 0 2353 262 21 29 chr13 65716328 65716438 -54028460 - MLT1E1 LTR MaLR -1 653 544 1660 186 48 36 chr13 65716438 65716771 -54028127 - MER1B DNA MER1_type 0 337 1 2353 262 21 29 chr13 65716771 65717204 -54027694 - MLT1E1 LTR MaLR -110 544 113 1607 137 96 60 chr13 65717204 65717568 -54027330 + MER51B LTR ERV1 1 377 0 2353 262 21 29 chr13 65717568 65717679 -54027219 - MLT1E1 LTR MaLR -541 113 3 264 170 85 53 chr13 65718014 65718108 -54026790 - MER51D LTR ERV1 -44 613 517 389 352 17 17 chr13 65719002 65719178 -54025720 + MER5B DNA MER1_type 2 177 -1 3169 264 53 56 chr13 65719212 65719639 -54025259 - L1M4 LINE L1 -1306 4840 4413 299 64 0 21 chr13 65719639 65719686 -54025212 + (TA)n Simple_repeat Simple_repeat 1 46 0 3169 264 53 56 chr13 65719686 65720823 -54024075 - L1M4 LINE L1 -1733 4413 3281 2037 136 0 0 chr13 65721052 65721347 -54023551 + AluSx SINE Alu 1 295 -17 2310 92 0 3 chr13 65721357 65721660 -54023238 + AluY SINE Alu 6 307 -4 1832 102 4 8 chr13 65722482 65722737 -54022161 - AluSc SINE Alu -55 254 1 180 158 0 0 chr13 65724392 65724430 -54020468 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 300 298 0 43 chr13 65724795 65724889 -54020009 + MER5A DNA MER1_type 13 102 -87 2371 78 0 10 chr13 65725034 65725340 -54019558 - AluY SINE Alu -8 303 1 221 246 36 82 chr13 65725340 65725450 -54019448 - MIR SINE MIR -21 241 137 411 306 159 6 chr13 65726429 65726586 -54018312 + MER5A DNA MER1_type 9 189 0 26 0 0 0 chr13 65726655 65726681 -54018217 + AT_rich Low_complexity Low_complexity 1 26 0 1404 300 56 31 chr13 65726973 65727487 -54017411 + L1M4b LINE L1 -574 4294967248 -6332 1445 266 43 24 chr13 65727577 65728307 -54016591 + L1M4b LINE L1 1263 2144 -4419 331 275 50 88 chr13 65728314 65728432 -54016466 + L1MEc LINE L1 1735 1841 -4555 2051 134 3 13 chr13 65728432 65728738 -54016160 - AluSq SINE Alu -10 303 1 331 275 50 88 chr13 65728738 65728859 -54016039 + L1MEc LINE L1 1841 1965 -4431 1666 203 37 6 chr13 65728894 65729219 -54015679 + MER2 DNA MER2_type 2 336 -9 547 269 72 32 chr13 65729288 65729748 -54015150 + L1MEc LINE L1 1944 2426 -3789 1745 157 16 9 chr13 65729815 65730134 -54014764 - L1PA16 LINE L1 -2 6164 5844 22 35 0 0 chr13 65730777 65730806 -54014092 + AT_rich Low_complexity Low_complexity 1 29 0 5055 156 20 7 chr13 65730865 65731752 -54013146 - L1PA15 LINE L1 -4 6161 5263 3740 224 15 9 chr13 65731750 65732813 -54012085 - L1PA12 LINE L1 -3734 3063 1994 * 1490 218 3 3 chr13 65732815 65733123 -54011775 - L1PA12 LINE L1 -4945 1842 1535 855 317 5 0 chr13 65733120 65733344 -54011554 - L1PA12 LINE L1 -6562 225 1 * 28 29 0 0 chr13 65733492 65733527 -54011371 + AT_rich Low_complexity Low_complexity 1 35 0 1628 186 0 16 chr13 65733534 65733846 -54011052 - L1PA15 LINE L1 0 6165 5859 857 256 96 83 chr13 65734108 65734639 -54010259 - MLT1F LTR MaLR -4 538 1 356 326 70 93 chr13 65734661 65735286 -54009612 + L2 LINE L2 1606 2216 -1098 1948 178 37 28 chr13 65735588 65735943 -54008955 + THE1B LTR MaLR 7 364 0 11108 101 4 33 chr13 65735943 65737571 -54007327 + THE1B-int LTR MaLR 1 1580 0 1932 167 30 35 chr13 65737571 65737937 -54006961 + THE1B LTR MaLR 1 364 0 315 351 29 50 chr13 65738029 65738271 -54006627 + L2 LINE L2 2681 2917 -397 249 33 0 0 chr13 65738518 65738548 -54006350 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1858 158 0 0 chr13 65738554 65738832 -54006066 - AluSq SINE Alu -35 278 1 21 0 0 0 chr13 65740026 65740047 -54004851 + AT_rich Low_complexity Low_complexity 1 21 0 286 350 57 21 chr13 65740133 65740273 -54004625 + L2 LINE L2 3128 3272 0 342 348 6 50 chr13 65741044 65741205 -54003693 - MIR SINE MIR -108 154 1 529 360 59 4 chr13 65741487 65741740 -54003158 + MLT2F LTR ERVL 1 267 -396 600 288 68 5 chr13 65741874 65742079 -54002819 + MLT2F LTR ERVL 446 663 0 408 259 7 0 chr13 65742205 65742340 -54002558 + L1MC5 LINE L1 7107 7242 -719 537 163 31 0 chr13 65742446 65742544 -54002354 - MLT1A1 LTR MaLR -4 361 261 361 185 11 22 chr13 65742628 65742720 -54002178 - L1PA14 LINE L1 -2 6159 6069 26 50 0 0 chr13 65743338 65743378 -54001520 + AT_rich Low_complexity Low_complexity 1 40 0 292 254 56 0 chr13 65743420 65743491 -54001407 + MLT1F LTR MaLR 1 75 -467 227 271 17 0 chr13 65743532 65743591 -54001307 + MLT1F LTR MaLR 100 159 -408 976 200 59 41 chr13 65743647 65743867 -54001031 + LTR69 LTR ERVL 359 582 -6 314 268 9 62 chr13 65743910 65744022 -54000876 + MLT1J1 LTR MaLR 1 106 -340 416 277 35 125 chr13 65744084 65744340 -54000558 + MLT1H1 LTR MaLR 14 246 -309 262 335 65 32 chr13 65744581 65744766 -54000132 + MLT1J2 LTR MaLR 260 450 0 24 0 0 0 chr13 65744977 65745001 -53999897 + AT_rich Low_complexity Low_complexity 1 24 0 2354 88 0 0 chr13 65745346 65745640 -53999258 - AluY SINE Alu -17 294 1 217 327 56 37 chr13 65745812 65745974 -53998924 - L3 LINE CR1 -891 686 522 225 0 0 0 chr13 65747556 65747581 -53997317 + (TG)n Simple_repeat Simple_repeat 1 25 0 380 248 39 12 chr13 65748046 65748298 -53996600 - L1ME2 LINE L1 0 6166 5866 185 304 101 0 chr13 65748321 65748390 -53996508 + MIR SINE MIR 183 258 -4 215 170 21 0 chr13 65748669 65748716 -53996182 + GA-rich Low_complexity Low_complexity 4 51 0 24 0 0 0 chr13 65749915 65749939 -53994959 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 65751135 65751159 -53993739 + AT_rich Low_complexity Low_complexity 1 24 0 186 382 43 19 chr13 65752391 65752598 -53992300 - L2 LINE L2 0 3313 3102 443 305 76 43 chr13 65752651 65752691 -53992207 + MIR SINE MIR 10 47 -215 1037 208 62 4 chr13 65752691 65752951 -53991947 - ORSL DNA AcHobo 0 275 1 443 305 76 43 chr13 65752951 65753120 -53991778 + MIR SINE MIR 47 226 -36 2235 120 3 0 chr13 65754311 65754619 -53990279 + AluSq SINE Alu 1 309 -4 180 0 0 0 chr13 65754651 65754671 -53990227 + (CATA)n Simple_repeat Simple_repeat 1 20 0 3394 130 10 0 chr13 65755168 65755677 -53989221 - MER75 DNA T2_type 0 514 1 857 134 104 30 chr13 65755876 65756040 -53988858 - MER4D LTR ERV1 0 903 728 922 231 11 31 chr13 65756123 65756383 -53988515 - MER4D LTR ERV1 -175 728 474 * 1250 177 38 30 chr13 65756374 65756640 -53988258 - MER4D LTR ERV1 -635 268 1 207 271 29 14 chr13 65756871 65756930 -53987968 - MER5B DNA MER1_type -83 95 36 190 149 15 134 chr13 65756930 65756997 -53987901 - MER5A DNA MER1_type -3 186 128 345 240 52 71 chr13 65757322 65757476 -53987422 + LTR40a LTR ERVL 1 151 -368 683 314 42 45 chr13 65757583 65757920 -53986978 + LTR40a LTR ERVL 179 514 -5 22 35 0 0 chr13 65757980 65758009 -53986889 + AT_rich Low_complexity Low_complexity 1 29 0 511 295 53 20 chr13 65758022 65758266 -53986632 + L1MEc LINE L1 142 393 -6003 399 21 0 0 chr13 65758266 65758314 -53986584 + (TG)n Simple_repeat Simple_repeat 2 49 0 1564 255 113 27 chr13 65758352 65759176 -53985722 + L1MEc LINE L1 484 1185 -5030 314 388 38 0 chr13 65759292 65759452 -53985446 - MIR SINE MIR -26 236 71 552 100 0 0 chr13 65759631 65759711 -53985187 - MADE1 DNA Mariner 0 80 1 214 340 32 21 chr13 65759842 65759936 -53984962 - MIR SINE MIR -76 132 38 22 35 0 0 chr13 65759945 65759974 -53984924 + AT_rich Low_complexity Low_complexity 1 29 0 200 264 19 0 chr13 65760754 65760807 -53984091 + (TA)n Simple_repeat Simple_repeat 2 55 0 1380 75 0 21 chr13 65761326 65761512 -53983386 - AluY SINE Alu -13 298 117 182 348 34 0 chr13 65761718 65761836 -53983062 + L2 LINE L2 2862 2983 -289 1129 36 0 0 chr13 65761907 65762047 -53982851 - L1PA5 LINE L1 0 6154 6015 984 82 0 0 chr13 65762047 65762169 -53982729 - AluY SINE Alu -189 122 1 661 283 60 85 chr13 65763698 65764383 -53980515 + L2 LINE L2 2580 3249 -64 24 0 0 0 chr13 65764399 65764423 -53980475 + AT_rich Low_complexity Low_complexity 1 24 0 2076 119 3 0 chr13 65764730 65765025 -53979873 + AluSx SINE Alu 1 296 -16 333 0 0 0 chr13 65765067 65765104 -53979794 + (CA)n Simple_repeat Simple_repeat 2 38 0 243 266 53 9 chr13 65765104 65765217 -53979681 + L1 LINE L1 2705 2822 -3324 284 261 225 0 chr13 65765219 65765330 -53979568 + MER34 LTR ERV1 5 140 -402 798 211 51 24 chr13 65765372 65765634 -53979264 + LTR48 LTR ERV1 380 629 -15 242 273 164 18 chr13 65766182 65766292 -53978606 + MIR SINE MIR 99 224 -38 329 134 10 31 chr13 65767732 65767829 -53977069 + (TTTG)n Simple_repeat Simple_repeat 2 96 0 1220 213 7 46 chr13 65768273 65768578 -53976320 - AluJo SINE Alu -9 293 1 2131 178 0 0 chr13 65769553 65769935 -53974963 - L1 LINE L1 -1937 4209 3828 * 5053 197 13 8 chr13 65769926 65770136 -53974762 + L1 LINE L1 4190 4397 -1754 198 0 0 0 chr13 65770136 65770158 -53974740 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5053 197 13 8 chr13 65770158 65770625 -53974273 + L1 LINE L1 4397 4860 -1291 246 32 0 0 chr13 65770625 65770656 -53974242 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5053 197 13 8 chr13 65770656 65771210 -53973688 + L1 LINE L1 4860 5428 -723 810 313 65 45 chr13 65771257 65771810 -53973088 + L1ME LINE L1 2738 3301 -2845 2036 135 0 7 chr13 65771983 65772286 -53972612 - AluSx SINE Alu -11 301 1 379 289 115 36 chr13 65772506 65773003 -53971895 + L1ME LINE L1 3829 4360 -1786 23 33 0 0 chr13 65773250 65773280 -53971618 + AT_rich Low_complexity Low_complexity 1 30 0 340 314 20 56 chr13 65773981 65774284 -53970614 + L1ME LINE L1 5335 5626 -544 27 0 0 0 chr13 65774579 65774606 -53970292 + AT_rich Low_complexity Low_complexity 1 27 0 1360 273 85 37 chr13 65775197 65775841 -53969057 - MLT1E2 LTR MaLR -2 624 1 303 146 0 0 chr13 65775961 65776016 -53968882 + (TA)n Simple_repeat Simple_repeat 1 55 0 785 253 63 63 chr13 65776017 65776317 -53968581 - MLT1A1 LTR MaLR -65 300 1 657 290 114 71 chr13 65776331 65776724 -53968174 - MLT1A1-int LTR MaLR -85 1286 877 2133 73 0 14 chr13 65776759 65777034 -53967864 - AluY SINE Alu -3 308 38 297 211 26 0 chr13 65777091 65777167 -53967731 - MLT1A1-int LTR MaLR -488 883 806 821 267 26 61 chr13 65777382 65777693 -53967205 - MLT1A1-int LTR MaLR -707 664 365 497 271 23 0 chr13 65777701 65777834 -53967064 - MLT1A1-int LTR MaLR -1178 193 58 22 56 0 0 chr13 65778221 65778257 -53966641 + AT_rich Low_complexity Low_complexity 1 36 0 238 143 18 89 chr13 65778395 65778451 -53966447 - HAL1 LINE L1 -622 1885 1834 227 218 18 18 chr13 65778539 65778594 -53966304 - MLT1-int LTR MaLR -515 856 802 623 310 53 7 chr13 65778603 65778636 -53966262 - HAL1 LINE L1 -773 1734 1704 855 239 106 58 chr13 65778636 65779012 -53965886 + MSTD LTR MaLR 1 394 -2 623 310 53 7 chr13 65779012 65779259 -53965639 - HAL1 LINE L1 -803 1704 1441 258 270 112 0 chr13 65780644 65780733 -53964165 - L2 LINE L2 -1 3312 3214 21 36 0 0 chr13 65780795 65780823 -53964075 + AT_rich Low_complexity Low_complexity 1 28 0 202 125 0 25 chr13 65781874 65781914 -53962984 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 964 123 116 0 chr13 65782595 65782782 -53962116 - AluSp SINE Alu 0 313 127 356 345 70 18 chr13 65783650 65783821 -53961077 + MLT1I LTR MaLR 94 273 -136 335 279 67 1 chr13 65784009 65784116 -53960782 - MIR SINE MIR -62 146 44 36845 89 16 10 chr13 65784128 65790225 -53954673 + L1PA6 LINE L1 11 6143 -11 375 358 114 15 chr13 65791122 65791393 -53953505 - L2 LINE L2 -27 3245 2948 251 212 26 97 chr13 65791930 65792043 -53952855 - MLT1J1 LTR MaLR -21 425 321 1295 253 94 2 chr13 65792266 65792669 -53952229 + L1MA7 LINE L1 3579 4018 -2128 679 187 0 8 chr13 65792665 65792799 -53952099 + L1MA7 LINE L1 4873 5005 -1141 * 5216 281 46 34 chr13 65792800 65795920 -53948978 + L1M3b LINE L1 11 2812 -3538 4548 178 46 17 chr13 65795923 65796916 -53947982 + L1MA7 LINE L1 5205 6221 -70 31 26 0 0 chr13 65796916 65796954 -53947944 + AT_rich Low_complexity Low_complexity 1 38 0 29 78 0 0 chr13 65796988 65797052 -53947846 + AT_rich Low_complexity Low_complexity 1 64 0 1702 203 32 5 chr13 65797055 65797736 -53947162 + L1MB8 LINE L1 4993 5782 -509 243 0 0 0 chr13 65797940 65797967 -53946931 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 631 229 55 32 chr13 65799022 65799240 -53945658 + L1MB8 LINE L1 5955 6177 -1 5143 153 19 3 chr13 65800722 65801714 -53943184 + L1PA16 LINE L1 5152 6157 -9 279 387 60 30 chr13 65805012 65805211 -53939687 - MIR SINE MIR -49 213 9 584 175 52 149 chr13 65805644 65805754 -53939144 + L1MA9 LINE L1 6035 6154 -158 264 100 0 0 chr13 65805754 65805794 -53939104 + (TATTG)n Simple_repeat Simple_repeat 2 41 0 584 175 52 149 chr13 65805794 65805952 -53938946 + L1MA9 LINE L1 6154 6277 -35 372 301 49 16 chr13 65805989 65806112 -53938786 - MLT1J LTR MaLR -315 196 70 2071 130 13 7 chr13 65806487 65806787 -53938111 - AluSx SINE Alu -10 302 1 40 49 0 0 chr13 65808328 65808389 -53936509 + AT_rich Low_complexity Low_complexity 1 61 0 1294 131 9 22 chr13 65808393 65808615 -53936283 - L1PA16 LINE L1 -2 6164 5946 29 70 0 0 chr13 65809269 65809326 -53935572 + AT_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr13 65809465 65809494 -53935404 + AT_rich Low_complexity Low_complexity 1 29 0 327 222 0 24 chr13 65809513 65809639 -53935259 + (TA)n Simple_repeat Simple_repeat 2 124 0 420 353 35 6 chr13 65810487 65810660 -53934238 - MIR SINE MIR -57 205 28 5712 137 47 13 chr13 65811105 65812103 -53932795 - Tigger3b DNA MER2_type 0 1231 200 1239 171 9 0 chr13 65812112 65812340 -53932558 - L1PB4 LINE L1 -2 6154 5925 1704 186 0 4 chr13 65812345 65812625 -53932273 - AluJb SINE Alu -33 279 1 515 137 94 0 chr13 65812625 65812742 -53932156 - L1PB4 LINE L1 -766 5390 5263 1218 185 0 19 chr13 65812745 65812956 -53931942 - Tigger3b DNA MER2_type -1020 211 5 2562 172 31 75 chr13 65813051 65813252 -53931646 - LTR9 LTR ERV1 0 612 404 2572 46 0 3 chr13 65813252 65813559 -53931339 - AluY SINE Alu -5 306 1 2562 172 31 75 chr13 65813559 65813995 -53930903 - LTR9 LTR ERV1 -208 404 3 205 294 35 24 chr13 65814413 65814498 -53930400 - L2 LINE L2 -1 3312 3227 358 316 7 5 chr13 65814620 65814772 -53930126 + L1ME2 LINE L1 5973 6125 -41 22 35 0 0 chr13 65814836 65814865 -53930033 + AT_rich Low_complexity Low_complexity 1 29 0 4000 166 11 21 chr13 65816279 65816997 -53927901 - MER50 LTR ERV1 -23 711 1 21163 100 6 11 chr13 65817057 65821010 -53923888 - L1PA7 LINE L1 -5 6149 2212 8201 121 22 36 chr13 65821011 65822618 -53922280 - L1PA7 LINE L1 -4660 1486 8 316 275 50 39 chr13 65823276 65823458 -53921440 - MER41B LTR ERV1 -194 441 258 424 322 118 0 chr13 65823662 65823814 -53921084 - MIR SINE MIR -81 181 12 26 0 0 0 chr13 65824692 65824718 -53920180 + AT_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr13 65825153 65825213 -53919685 + AT_rich Low_complexity Low_complexity 1 60 0 632 335 50 23 chr13 65826520 65826863 -53918035 - L3 LINE CR1 -424 1153 802 250 237 8 61 chr13 65828240 65828371 -53916527 - MER53 DNA DNA -65 124 1 232 235 15 15 chr13 65828600 65828668 -53916230 + (TA)n Simple_repeat Simple_repeat 1 68 0 1771 193 34 12 chr13 65828847 65829257 -53915641 - L1MA9 LINE L1 -5 6307 5889 3132 217 106 6 chr13 65829260 65830062 -53914836 - L1MA6 LINE L1 -12 6288 5407 968 160 64 0 chr13 65830058 65830246 -53914652 - L1MA9 LINE L1 -117 6195 5996 * 3994 201 14 50 chr13 65830251 65831334 -53913564 - L1MA6 LINE L1 -743 5403 4360 3600 84 8 10 chr13 65831353 65831853 -53913045 - L1PA8A LINE L1 -5 6126 5628 207 91 23 45 chr13 65832111 65832155 -53912743 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 423 248 78 46 chr13 65832497 65832715 -53912183 + MER112 DNA MER1_type 30 254 -6 2065 189 44 0 chr13 65833018 65833426 -53911472 - MSTB LTR MaLR 0 426 1 270 193 18 0 chr13 65833448 65833505 -53911393 - MLT1A2 LTR MaLR 0 374 317 4767 221 50 23 chr13 65833507 65834947 -53909951 + L1MC2 LINE L1 3835 5313 -833 3103 227 69 17 chr13 65834988 65835860 -53909038 + L1MC2 LINE L1 5283 6199 -145 438 219 128 6 chr13 65836298 65836462 -53908436 + MER53 DNA DNA 5 188 -1 2585 169 6 2 chr13 65837557 65838047 -53906851 + L1 LINE L1 4513 5004 -1142 * 7543 126 31 8 chr13 65838045 65838870 -53906028 + L1PA15 LINE L1 4119 4924 -1241 6257 60 12 0 chr13 65838870 65839670 -53905228 + L1PA6 LINE L1 5343 6153 -1 7543 126 31 8 chr13 65839670 65840849 -53904049 + L1PA15 LINE L1 4924 6165 0 686 235 25 25 chr13 65843023 65843219 -53901679 - Charlie1 DNA MER1_type -999 1762 1567 5296 153 46 16 chr13 65843221 65844105 -53900793 - Tigger3b DNA MER2_type -1817 1211 240 2308 94 0 0 chr13 65844105 65844403 -53900495 + AluY SINE Alu 1 298 -13 5296 153 46 16 chr13 65844403 65844649 -53900249 - Tigger3b DNA MER2_type -2788 240 3 566 260 21 21 chr13 65845355 65845574 -53899324 - MER106B DNA MER1_type -1 1058 17 964 222 45 33 chr13 65845601 65845935 -53898963 - Charlie1 DNA MER1_type 0 2761 2424 41 78 0 0 chr13 65846413 65846503 -53898395 + AT_rich Low_complexity Low_complexity 1 90 0 952 160 67 9 chr13 65848175 65848400 -53896498 - L1MA7 LINE L1 -1 6290 6053 339 365 16 0 chr13 65848427 65848553 -53896345 + MIR SINE MIR 20 147 -115 21332 107 10 16 chr13 65848993 65852210 -53892688 - L1P LINE L1 -2937 3209 11 26 30 0 0 chr13 65852569 65852602 -53892296 + AT_rich Low_complexity Low_complexity 1 33 0 2267 180 77 11 chr13 65852767 65853245 -53891653 - MER67D LTR ERV1 -3 511 2 603 270 78 50 chr13 65853404 65853904 -53890994 - L1MEd LINE L1 -3139 2990 2477 2186 185 53 21 chr13 65853928 65854464 -53890434 - LTR49 LTR ERV1 -1 594 109 24 53 0 0 chr13 65854512 65854550 -53890348 + AT_rich Low_complexity Low_complexity 1 38 0 1968 197 23 13 chr13 65854595 65854683 -53890215 - MER57A LTR ERV1 -2 401 315 1272 209 118 77 chr13 65854683 65855270 -53889628 - LTR36 LTR ERV1 0 611 1 1968 197 23 13 chr13 65855270 65855571 -53889327 - MER57A LTR ERV1 -88 315 8 21 0 0 0 chr13 65855734 65855755 -53889143 + AT_rich Low_complexity Low_complexity 1 21 0 325 180 115 0 chr13 65856260 65856321 -53888577 + MER5A DNA MER1_type 3 70 -119 587 297 48 93 chr13 65856331 65856937 -53887961 - L1MEd LINE L1 -4864 1255 711 291 71 0 0 chr13 65857196 65857238 -53887660 + (TA)n Simple_repeat Simple_repeat 1 42 0 22 56 0 0 chr13 65857607 65857643 -53887255 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr13 65857718 65857749 -53887149 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr13 65859090 65859118 -53885780 + AT_rich Low_complexity Low_complexity 1 28 0 1559 213 33 0 chr13 65859433 65859795 -53885103 + L1 LINE L1 2720 3093 -3053 9036 218 42 27 chr13 65860046 65863087 -53881811 - L1PA13 LINE L1 -2763 4034 927 3594 231 17 4 chr13 65863179 65863899 -53880999 - L1PA13 LINE L1 -6040 747 19 337 320 52 0 chr13 65864036 65864208 -53880690 - L1ME LINE L1 -433 5737 5557 584 311 62 38 chr13 65864342 65865382 -53879516 - L1ME LINE L1 -762 5384 4320 236 278 29 110 chr13 65865799 65865972 -53878926 - MLT1-int LTR MaLR -184 1187 1029 4745 159 14 15 chr13 65866133 65867000 -53877898 - L1PA16 LINE L1 -9 6157 5298 226 310 35 17 chr13 65867502 65867618 -53877280 - MLT1-int LTR MaLR -835 536 419 1926 154 73 14 chr13 65867924 65868268 -53876630 - THE1B LTR MaLR 0 364 1 11020 106 8 2 chr13 65868268 65869839 -53875059 - THE1B-int LTR MaLR 0 1580 1 2237 136 34 6 chr13 65869839 65870193 -53874705 - THE1B LTR MaLR 0 364 1 1163 270 77 22 chr13 65870204 65870656 -53874242 + Charlie1 DNA MER1_type 2 478 -2283 29 70 0 0 chr13 65870656 65870713 -53874185 + AT_rich Low_complexity Low_complexity 1 57 0 306 137 89 40 chr13 65870808 65870932 -53873966 + (TTTAA)n Simple_repeat Simple_repeat 5 134 0 308 365 45 6 chr13 65871793 65871949 -53872949 + L2 LINE L2 2543 2704 -610 534 324 50 58 chr13 65872083 65872426 -53872472 - MLT1J LTR MaLR -78 433 94 25 0 0 0 chr13 65872818 65872843 -53872055 + AT_rich Low_complexity Low_complexity 1 25 0 30 59 0 0 chr13 65873302 65873353 -53871545 + AT_rich Low_complexity Low_complexity 1 51 0 239 0 0 31 chr13 65873485 65873517 -53871381 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 979 27 0 0 chr13 65873517 65873629 -53871269 - L1PA5 LINE L1 -22 6132 6021 * 6102 51 1 6 chr13 65873628 65874780 -53870118 + L1PA6 LINE L1 4879 6025 -129 1563 174 7 3 chr13 65875534 65875821 -53869077 + L1M2 LINE L1 5445 5732 -559 2147 94 28 0 chr13 65876228 65876514 -53868384 + AluSq SINE Alu 1 294 -19 1395 224 40 16 chr13 65876524 65876845 -53868053 + MER2 DNA MER2_type 1 329 -16 203 250 238 0 chr13 65877084 65877164 -53867734 + MIR SINE MIR 89 187 -75 43 20 0 0 chr13 65877280 65877330 -53867568 + AT_rich Low_complexity Low_complexity 1 50 0 230 266 0 0 chr13 65878131 65878195 -53866703 - L1ME LINE L1 -5944 126 63 28 0 0 0 chr13 65878272 65878300 -53866598 + AT_rich Low_complexity Low_complexity 1 28 0 2612 32 3 3 chr13 65878301 65878610 -53866288 + AluSx SINE Alu 1 309 -3 515 369 100 35 chr13 65878798 65879660 -53865238 + L2 LINE L2 1944 2861 -453 251 311 98 16 chr13 65879916 65880038 -53864860 + L2 LINE L2 3142 3273 -40 738 259 127 9 chr13 65880524 65880744 -53864154 + MIR SINE MIR 10 255 -7 334 295 36 27 chr13 65880783 65880895 -53864003 - MIR SINE MIR -105 157 45 1626 191 10 13 chr13 65881021 65881324 -53863574 + AluJo SINE Alu 1 302 -10 337 273 90 39 chr13 65881331 65881587 -53863311 - L1MC5 LINE L1 -80 7881 7613 25 90 0 0 chr13 65881734 65881801 -53863097 + AT_rich Low_complexity Low_complexity 1 67 0 35 107 0 0 chr13 65883762 65883902 -53860996 + AT_rich Low_complexity Low_complexity 1 140 0 21 36 0 0 chr13 65884101 65884129 -53860769 + AT_rich Low_complexity Low_complexity 1 28 0 2169 204 82 6 chr13 65885551 65886062 -53858836 + L1PA13 LINE L1 3348 3897 -2249 6845 180 7 2 chr13 65886063 65888234 -53856664 + L1PA13 LINE L1 3987 6155 -8 1072 265 27 43 chr13 65888833 65889275 -53855623 - L1M4 LINE L1 -1870 4774 4340 620 219 8 0 chr13 65889292 65889415 -53855483 - FLAM_A SINE Alu -6 127 4 263 253 25 13 chr13 65889419 65889498 -53855400 - L1M4 LINE L1 -2290 4354 4275 356 324 0 7 chr13 65889504 65889649 -53855249 + L1M4 LINE L1 4735 4878 -1268 377 225 92 0 chr13 65890702 65890822 -53854076 - L1M4 LINE L1 -3756 2888 2758 370 265 42 70 chr13 65890819 65891034 -53853864 - L1M4 LINE L1 -4227 2419 2211 * 1472 246 37 70 chr13 65891276 65891865 -53853033 - L1M4 LINE L1 -4706 1940 1371 1296 153 0 5 chr13 65891885 65892100 -53852798 + AluSg/x SINE Alu 84 297 -12 4487 254 48 18 chr13 65892105 65893405 -53851493 - L1M4 LINE L1 -5203 1339 1 442 327 142 5 chr13 65894113 65894324 -53850574 - MIR SINE MIR -11 251 12 301 316 97 13 chr13 65894364 65894519 -53850379 + MIR SINE MIR 52 219 -43 488 319 55 4 chr13 65894822 65895060 -53849838 + MER110 LTR ERV1 194 443 -48 591 314 105 51 chr13 65895159 65895976 -53848922 - L2 LINE L2 -3 3310 2450 917 120 0 0 chr13 65896088 65896213 -53848685 + AluSq/x SINE Alu 1 125 -188 2520 221 81 2 chr13 65896538 65897153 -53847745 - L1MB2 LINE L1 -4 6167 5504 242 314 43 0 chr13 65897170 65897240 -53847658 - MIR SINE MIR -157 105 33 650 370 32 11 chr13 65897303 65897679 -53847219 - MLT1J1 LTR MaLR 0 446 63 180 111 0 0 chr13 65898950 65898977 -53845921 + (CATA)n Simple_repeat Simple_repeat 1 27 0 238 206 44 0 chr13 65899091 65899159 -53845739 + (TA)n Simple_repeat Simple_repeat 2 72 0 7461 257 29 31 chr13 65900268 65900543 -53844355 + L1M4c LINE L1 2174 2448 -3934 2389 58 3 0 chr13 65900543 65900834 -53844064 + AluY SINE Alu 3 294 -17 7461 257 29 31 chr13 65900834 65903436 -53841462 + L1M4c LINE L1 2448 5045 -1337 2334 94 0 0 chr13 65904702 65904999 -53839899 + AluSx SINE Alu 1 297 -15 202 167 52 31 chr13 65905002 65905098 -53839800 + (TA)n Simple_repeat Simple_repeat 2 99 0 200 171 34 11 chr13 65905117 65905205 -53839693 + (TA)n Simple_repeat Simple_repeat 1 90 0 389 340 52 54 chr13 65907835 65908352 -53836546 + L1ME LINE L1 17 532 -5538 312 299 55 29 chr13 65908486 65908801 -53836097 + L1ME LINE L1 530 835 -5277 2009 123 3 0 chr13 65908801 65909086 -53835812 + AluSx SINE Alu 1 286 -26 218 31 0 31 chr13 65909087 65909119 -53835779 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 312 299 55 29 chr13 65909119 65909264 -53835634 + L1ME LINE L1 834 1043 -5069 604 263 111 11 chr13 65910092 65910282 -53834616 - MER82 DNA MER2_type -1 652 444 269 297 65 32 chr13 65910315 65910470 -53834428 + MIR SINE MIR 3 162 -100 1654 106 24 0 chr13 65911610 65911864 -53833034 - L1PA13 LINE L1 -3 6160 5901 3571 120 8 0 chr13 65911869 65912394 -53832504 + L1PA13 LINE L1 5388 5916 -252 686 263 33 14 chr13 65913175 65913388 -53831510 - L1ME1 LINE L1 -5 6161 5945 285 331 33 43 chr13 65913699 65913883 -53831015 + L2 LINE L2 3113 3294 -19 2020 122 3 0 chr13 65913975 65914262 -53830636 - AluSg SINE Alu -6 304 17 314 331 34 51 chr13 65914299 65914477 -53830421 + MLT1J LTR MaLR 1 175 -336 235 267 0 27 chr13 65914560 65914635 -53830263 + MLT1J1 LTR MaLR 250 322 -124 315 311 149 80 chr13 65914763 65915389 -53829509 + L2 LINE L2 1313 1981 -1333 1007 266 111 20 chr13 65915393 65915791 -53829107 + MER57B LTR ERV1 1 434 0 198 222 0 0 chr13 65915839 65915893 -53829005 + (TA)n Simple_repeat Simple_repeat 1 54 0 264 59 0 0 chr13 65916216 65916250 -53828648 + (A)n Simple_repeat Simple_repeat 1 34 0 366 356 67 41 chr13 65916491 65916836 -53828062 - L2 LINE L2 -2873 441 88 25 51 0 0 chr13 65917552 65917591 -53827307 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr13 65917649 65917681 -53827217 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr13 65918186 65918211 -53826687 + AT_rich Low_complexity Low_complexity 1 25 0 685 93 0 113 chr13 65918366 65918517 -53826381 + L1MB2 LINE L1 5985 6118 -53 356 321 95 32 chr13 65919252 65919747 -53825151 - L1M4 LINE L1 -3355 2791 2266 315 49 0 0 chr13 65920083 65920124 -53824774 + (CA)n Simple_repeat Simple_repeat 2 42 0 1567 192 21 7 chr13 65920179 65920470 -53824428 - AluJo SINE Alu -17 295 1 480 287 69 44 chr13 65920509 65921377 -53823521 - L1MDa LINE L1 -2500 4040 3101 347 301 63 25 chr13 65921749 65922035 -53822863 - L1MDa LINE L1 -3580 2960 2664 308 252 59 37 chr13 65922046 65922181 -53822717 - L1MDa LINE L1 -3909 2631 2494 271 308 8 0 chr13 65922206 65922323 -53822575 + (TA)n Simple_repeat Simple_repeat 1 118 0 367 246 37 0 chr13 65922378 65922512 -53822386 - L1MDa LINE L1 -3735 2805 2667 2547 58 0 0 chr13 65923447 65923757 -53821141 + AluY SINE Alu 1 310 -1 21 0 0 0 chr13 65924188 65924209 -53820689 + AT_rich Low_complexity Low_complexity 1 21 0 371 336 71 0 chr13 65924679 65924905 -53819993 - L1MDa LINE L1 -4579 2142 1901 361 317 112 45 chr13 65925150 65925569 -53819329 - L1MDa LINE L1 -4939 1591 1145 28 29 0 0 chr13 65926248 65926283 -53818615 + AT_rich Low_complexity Low_complexity 1 35 0 2155 89 0 4 chr13 65926355 65926635 -53818263 + AluY SINE Alu 1 279 -32 180 97 0 0 chr13 65926636 65926667 -53818231 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 239 336 107 20 chr13 65927222 65927371 -53817527 + L2 LINE L2 998 1159 -2155 1618 240 29 19 chr13 65927384 65927813 -53817085 - MLT2C2 LTR ERVL -31 414 1 531 216 15 8 chr13 65928060 65928194 -53816704 + MLT2B2 LTR ERVL 1 135 -380 1865 106 69 0 chr13 65928308 65928583 -53816315 + AluSg SINE Alu 1 294 -16 369 83 28 14 chr13 65928583 65928655 -53816243 + (TA)n Simple_repeat Simple_repeat 2 74 0 611 209 19 127 chr13 65928657 65928967 -53815931 + MLT2B1 LTR ERVL 147 512 -8 25 0 0 0 chr13 65929026 65929051 -53815847 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 65929083 65929106 -53815792 + AT_rich Low_complexity Low_complexity 1 23 0 15340 69 1 0 chr13 65930471 65933312 -53811586 + L1PA5 LINE L1 3301 6149 -5 25 51 0 0 chr13 65933515 65933554 -53811344 + AT_rich Low_complexity Low_complexity 1 39 0 242 417 62 14 chr13 65934196 65934340 -53810558 - L2 LINE L2 -18 3254 3104 26 30 0 0 chr13 65937487 65937520 -53807378 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr13 65937881 65937908 -53806990 + AT_rich Low_complexity Low_complexity 1 27 0 245 237 118 0 chr13 65939065 65939141 -53805757 + L1ME LINE L1 5724 5808 -354 510 17 0 0 chr13 65939286 65939345 -53805553 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 312 27 0 0 chr13 65939457 65939494 -53805404 + (TA)n Simple_repeat Simple_repeat 1 37 0 205 309 154 11 chr13 65939609 65939797 -53805101 + L2 LINE L2 3041 3255 -58 310 338 13 48 chr13 65939917 65940145 -53804753 - L2 LINE L2 -1214 2100 1881 227 196 54 0 chr13 65940559 65940615 -53804283 - L1ME3A LINE L1 -74 6096 6038 307 219 299 6 chr13 65940936 65941100 -53803798 + MER106A DNA MER1_type 18 229 -7 344 326 98 40 chr13 65941125 65941349 -53803549 + HAL1 LINE L1 1727 1963 -544 431 313 47 60 chr13 65941424 65941724 -53803174 + HAL1b LINE L1 558 853 -495 32 26 0 0 chr13 65941764 65941803 -53803095 + AT_rich Low_complexity Low_complexity 1 39 0 448 283 78 6 chr13 65941860 65942026 -53802872 + LTR53 LTR ERVL 22 199 -320 2992 43 0 0 chr13 65942026 65942396 -53802502 - L1P LINE L1 -3911 2235 1866 1739 46 0 0 chr13 65942396 65942615 -53802283 + L1PA5 LINE L1 5920 6138 -16 21 0 0 0 chr13 65942615 65942636 -53802262 + AT_rich Low_complexity Low_complexity 1 21 0 552 256 106 33 chr13 65942641 65942821 -53802077 + LTR53 LTR ERVL 190 382 -137 1477 195 0 29 chr13 65943161 65943468 -53801430 - AluJb SINE Alu -14 298 1 2047 80 0 0 chr13 65944570 65944844 -53800054 + L1P5 LINE L1 5396 5669 -482 1717 274 53 46 chr13 65945161 65945686 -53799212 - L1ME1 LINE L1 0 6166 5633 2338 75 10 0 chr13 65945686 65945979 -53798919 + AluSp SINE Alu 5 300 -13 1717 274 53 46 chr13 65945979 65946127 -53798771 - L1ME1 LINE L1 -533 5633 5488 846 218 21 11 chr13 65946253 65946441 -53798457 - AluJo SINE Alu -30 282 93 276 350 87 29 chr13 65946591 65947042 -53797856 - HERVL LTR ERVL -3004 2650 2174 189 74 0 0 chr13 65947614 65947641 -53797257 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 298 73 18 18 chr13 65948549 65948604 -53796294 + (TA)n Simple_repeat Simple_repeat 1 55 0 203 175 0 0 chr13 65948970 65949010 -53795888 + T-rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr13 65949219 65949249 -53795649 + AT_rich Low_complexity Low_complexity 1 30 0 261 271 10 10 chr13 65950914 65951010 -53793888 + (TA)n Simple_repeat Simple_repeat 2 97 0 201 328 85 34 chr13 65951105 65951282 -53793616 + MIR SINE MIR 4 189 -73 21 0 0 0 chr13 65951340 65951361 -53793537 + AT_rich Low_complexity Low_complexity 1 21 0 1886 245 25 6 chr13 65952797 65953312 -53791586 - L1MB8 LINE L1 -5 6173 5649 591 260 14 104 chr13 65953955 65954203 -53790695 + L1 LINE L1 4045 4253 -1893 308 24 0 24 chr13 65954203 65954245 -53790653 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 591 260 14 104 chr13 65954245 65954350 -53790548 + L1 LINE L1 4253 4366 -1780 2141 238 38 79 chr13 65954350 65955037 -53789861 - L1MB8 LINE L1 -2073 4073 3360 1097 209 77 74 chr13 65955037 65955401 -53789497 - MLT1A1 LTR MaLR 0 365 1 2141 238 38 79 chr13 65955401 65955451 -53789447 - L1MB8 LINE L1 -2786 3360 3310 1677 148 46 87 chr13 65955451 65955842 -53789056 + THE1C LTR MaLR 1 375 0 2141 238 38 79 chr13 65955842 65956145 -53788753 - L1MB8 LINE L1 -2836 3310 3074 6568 35 0 0 chr13 65956180 65956957 -53787941 - L1PA3 LINE L1 -1 6154 5378 286 360 13 39 chr13 65957161 65957314 -53787584 + MLT1F1-int LTR MaLR 961 1109 -262 1111 275 66 54 chr13 65957646 65958206 -53786692 + MLT1F1 LTR MaLR 4 567 0 1593 157 4 4 chr13 65958797 65959052 -53785846 - AluSg SINE Alu -55 255 1 198 71 0 0 chr13 65959273 65959301 -53785597 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 317 167 0 64 chr13 65959580 65959658 -53785240 - MADE1 DNA Mariner 0 80 8 214 347 24 16 chr13 65959691 65959815 -53785083 - L2 LINE L2 -2269 1045 921 605 367 116 19 chr13 65960257 65960824 -53784074 + L2 LINE L2 246 867 -2447 342 368 23 17 chr13 65960831 65961005 -53783893 + L2 LINE L2 802 976 -2338 7626 218 12 9 chr13 65961524 65963348 -53781550 + L1 LINE L1 3165 4993 -1153 1533 176 42 88 chr13 65963419 65963827 -53781071 - MLT1B LTR MaLR -1 389 1 530 189 11 0 chr13 65963921 65964016 -53780882 - Tigger7 DNA MER2_type 0 2487 2392 1403 235 4 4 chr13 65964019 65964283 -53780615 - Tigger7 DNA MER2_type -2222 265 2 25 31 0 0 chr13 65964283 65964315 -53780583 + AT_rich Low_complexity Low_complexity 1 32 0 286 159 63 32 chr13 65964483 65964546 -53780352 - L1MB1 LINE L1 -5 6163 6099 2696 192 20 2 chr13 65964553 65965101 -53779797 - L1MB1 LINE L1 -137 6052 5495 412 281 191 5 chr13 65965102 65965312 -53779586 - L2 LINE L2 -2252 1062 814 495 332 100 28 chr13 65965312 65965601 -53779297 - L2 LINE L2 -2770 544 235 21 57 0 0 chr13 65966789 65966824 -53778074 + AT_rich Low_complexity Low_complexity 1 35 0 1823 213 29 29 chr13 65967192 65967605 -53777293 + MLT2D LTR ERVL 1 413 -1 1774 148 103 15 chr13 65967726 65968065 -53776833 - THE1C LTR MaLR 0 375 7 372 316 34 8 chr13 65968176 65968293 -53776605 + MIR SINE MIR 1 120 -142 491 337 65 8 chr13 65968502 65968763 -53776135 + LTR16A1 LTR ERVL 182 457 0 219 264 174 16 chr13 65968765 65968886 -53776012 + MIR SINE MIR 121 260 -2 1452 204 3 26 chr13 65969122 65969426 -53775472 + AluJo SINE Alu 1 297 -15 189 0 0 0 chr13 65969713 65969734 -53775164 + (TG)n Simple_repeat Simple_repeat 2 22 0 275 280 150 0 chr13 65969832 65969932 -53774966 - L2 LINE L2 -541 2773 2659 732 207 7 7 chr13 65969932 65970077 -53774821 + MER117 DNA MER1_type 1 145 -52 318 310 60 9 chr13 65970622 65970738 -53774160 + MIR SINE MIR 20 141 -121 1839 133 41 7 chr13 65971315 65971609 -53773289 + AluSx SINE Alu 9 312 0 300 292 53 41 chr13 65973125 65973296 -53771602 - L3 LINE CR1 -507 1070 898 2236 188 119 26 chr13 65974081 65974730 -53770168 + MER67C LTR ERV1 1 709 -1 238 247 139 30 chr13 65975252 65975418 -53769480 + LTR50 LTR ERVL 612 795 0 360 336 47 50 chr13 65975708 65976047 -53768851 + HERVL68 LTR ERVL 352 689 -5075 228 35 0 0 chr13 65976116 65976145 -53768753 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr13 65976273 65976297 -53768601 + AT_rich Low_complexity Low_complexity 1 24 0 742 288 67 10 chr13 65976300 65976498 -53768400 + HERVL68 LTR ERVL 2336 2521 -3045 228 67 0 0 chr13 65976498 65976528 -53768370 + (TA)n Simple_repeat Simple_repeat 2 31 0 742 288 67 10 chr13 65976528 65976643 -53768255 + HERVL68 LTR ERVL 2521 2715 -2851 546 274 42 6 chr13 65976802 65976970 -53767928 + MER58B DNA MER1_type 168 341 0 500 360 6 0 chr13 65977126 65977304 -53767594 + HERVL68 LTR ERVL 3020 3198 -2456 362 274 126 7 chr13 65977903 65978038 -53766860 + LTR41 LTR ERVL 3 153 -620 428 392 5 14 chr13 65978039 65978261 -53766637 + HERVL68 LTR ERVL 1132 1351 -4179 403 338 61 18 chr13 65978899 65979127 -53765771 + HERVL68 LTR ERVL 1380 1617 -3913 * 4487 280 82 68 chr13 65979126 65979718 -53765180 + HERVL68 LTR ERVL 2050 2633 -2897 187 224 28 75 chr13 65979718 65979825 -53765073 + MER5C DNA MER1_type 191 292 -32 4487 280 82 68 chr13 65979825 65981496 -53763402 + HERVL68 LTR ERVL 2633 4496 -1034 350 311 45 59 chr13 65981706 65981928 -53762970 + HERVL68 LTR ERVL 2486 2704 -333 764 230 29 0 chr13 65982136 65982310 -53762588 + HERVL68 LTR ERVL 5352 5530 0 1234 285 41 11 chr13 65982313 65982755 -53762143 + LTR40b LTR ERVL 4 458 -4 376 328 86 10 chr13 65982760 65982958 -53761940 + L2 LINE L2 3098 3310 -3 27 0 0 0 chr13 65983265 65983292 -53761606 + AT_rich Low_complexity Low_complexity 1 27 0 1096 148 0 11 chr13 65983848 65984024 -53760874 + AluSg/x SINE Alu 129 302 -10 270 294 34 8 chr13 65984040 65984159 -53760739 + L1M4 LINE L1 4110 4231 -1915 240 302 21 73 chr13 65984609 65984801 -53760097 + L1MEd LINE L1 3 184 -5935 237 65 0 0 chr13 65985015 65985046 -53759852 + (TG)n Simple_repeat Simple_repeat 1 31 0 184 288 39 59 chr13 65986951 65987104 -53757794 + L2 LINE L2 2272 2421 -893 279 0 0 0 chr13 65987855 65987886 -53757012 + (TATG)n Simple_repeat Simple_repeat 2 32 0 232 361 31 21 chr13 65987969 65988066 -53756832 + L2 LINE L2 3174 3271 -1 407 359 116 11 chr13 65989614 65990323 -53754575 + ERVL LTR ERVL 4577 5379 -385 401 340 92 55 chr13 65990550 65990929 -53753969 + LTR33 LTR ERVL 6 398 -123 27 0 0 0 chr13 65991443 65991470 -53753428 + AT_rich Low_complexity Low_complexity 1 27 0 29 0 0 0 chr13 65992794 65992823 -53752075 + AT_rich Low_complexity Low_complexity 1 29 0 2895 207 46 39 chr13 65993572 65994341 -53750557 - L1MA9 LINE L1 -38 6274 5511 2213 97 0 16 chr13 65994341 65994692 -53750206 - AluY SINE Alu 0 311 1 361 298 48 0 chr13 65994692 65994816 -53750082 - FLAM_A SINE Alu -2 131 2 2895 207 46 39 chr13 65994816 65995313 -53749585 - L1MA9 LINE L1 -800 5512 4826 417 309 51 86 chr13 65996770 65997201 -53747697 + L2 LINE L2 2207 2622 -692 216 158 0 0 chr13 65997201 65997239 -53747659 + GA-rich Low_complexity Low_complexity 3 40 0 249 330 4 107 chr13 65997553 65997786 -53747112 + L2 LINE L2 3105 3313 0 25 51 0 0 chr13 65997801 65997840 -53747058 + AT_rich Low_complexity Low_complexity 1 39 0 205 146 21 42 chr13 65999779 65999827 -53745071 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 287 214 0 0 chr13 65999829 65999885 -53745013 + L1MA9 LINE L1 2447 2502 -3644 8744 227 45 28 chr13 65999887 66002539 -53742359 + L1MA9 LINE L1 2599 5331 -981 1021 84 0 0 chr13 66002539 66002682 -53742216 + L1PA4 LINE L1 6007 6149 -6 8744 227 45 28 chr13 66002682 66003669 -53741229 + L1MA9 LINE L1 5331 6299 -13 2149 121 0 0 chr13 66003787 66004092 -53740806 - AluSc SINE Alu -3 306 2 25 0 0 0 chr13 66004100 66004125 -53740773 + AT_rich Low_complexity Low_complexity 1 25 0 1340 160 89 73 chr13 66004830 66005005 -53739893 + THE1C LTR MaLR 1 172 -203 1985 104 83 7 chr13 66005005 66005294 -53739604 + AluY SINE Alu 1 311 0 1340 160 89 73 chr13 66005294 66005487 -53739411 + THE1C LTR MaLR 172 375 0 2257 128 31 17 chr13 66005492 66005851 -53739047 - THE1B LTR MaLR 0 364 1 1146 225 100 89 chr13 66005857 66006315 -53738583 - MLT1E1 LTR MaLR -15 639 177 288 224 17 0 chr13 66008169 66008227 -53736671 + MLT1E1 LTR MaLR 3 61 -593 1305 67 240 0 chr13 66008234 66008442 -53736456 + LTR12 LTR ERV1 1 258 -456 268 333 16 0 chr13 66008442 66008565 -53736333 + LTR30 LTR ERV1 524 648 -74 1247 76 0 0 chr13 66008566 66008724 -53736174 + LTR12 LTR ERV1 486 643 -71 708 228 94 51 chr13 66008827 66009103 -53735795 - MLT1B LTR MaLR -93 297 10 2577 250 35 7 chr13 66010140 66010844 -53734054 - L1MD2 LINE L1 -9 6350 5627 23 0 0 0 chr13 66010954 66010977 -53733921 + AT_rich Low_complexity Low_complexity 1 23 0 188 35 35 0 chr13 66012199 66012228 -53732670 + (TG)n Simple_repeat Simple_repeat 1 30 0 1448 120 5 0 chr13 66013190 66013390 -53731508 + AluSg/x SINE Alu 77 277 -35 225 0 0 0 chr13 66013391 66013416 -53731482 + (TC)n Simple_repeat Simple_repeat 2 26 0 30 0 0 0 chr13 66013416 66013446 -53731452 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 66014195 66014216 -53730682 + AT_rich Low_complexity Low_complexity 1 21 0 1899 129 48 70 chr13 66015151 66015523 -53729375 + THE1B LTR MaLR 1 364 0 1013 261 59 24 chr13 66016250 66016785 -53728113 + L1M4 LINE L1 2382 2953 -3193 225 65 0 0 chr13 66016786 66016817 -53728081 + (GA)n Simple_repeat Simple_repeat 2 32 0 5133 211 35 24 chr13 66016851 66018105 -53726793 + L1M3f LINE L1 17 1287 -4111 1490 115 11 3 chr13 66018110 66018342 -53726556 + L1PA8A LINE L1 5907 6154 0 3088 238 31 25 chr13 66018344 66019325 -53725573 + L1M3f LINE L1 1276 2261 -4067 9150 225 27 9 chr13 66019440 66021717 -53723181 + L1M3f LINE L1 2307 4624 -1704 4803 194 22 1 chr13 66021818 66022733 -53722165 - L1P LINE L1 -5201 945 12 3912 299 39 11 chr13 66022733 66023986 -53720912 - L1M2a LINE L1 -5135 2033 746 1162 217 18 66 chr13 66024157 66024553 -53720345 - L1M2c LINE L1 -4642 2147 1771 * 27708 97 9 8 chr13 66024551 66028640 -53716258 - L1P LINE L1 -1089 5057 963 1559 208 68 16 chr13 66028740 66029125 -53715773 + L1MA4 LINE L1 5896 6300 0 2021 106 3 7 chr13 66029157 66029449 -53715449 - AluSc SINE Alu -18 291 1 2936 186 67 13 chr13 66030902 66031514 -53713384 - ERVL LTR ERVL -1072 4692 4048 2758 290 63 27 chr13 66031539 66034026 -53710872 - L1MCc LINE L1 -2324 4617 1968 926 279 49 19 chr13 66034050 66034398 -53710500 - L1MCc LINE L1 -5708 714 11 793 243 11 16 chr13 66034754 66034939 -53709959 + MER5A DNA MER1_type 1 184 -5 1707 121 8 0 chr13 66035232 66035480 -53709418 - AluY SINE Alu -6 305 56 1774 177 38 70 chr13 66036027 66036473 -53708425 - MSTB1 LTR MaLR 0 432 1 3444 198 73 28 chr13 66037175 66037884 -53707014 - L1MB2 LINE L1 -9 6162 5362 5405 102 4 8 chr13 66037884 66038667 -53706231 - LTR17 LTR ERV1 0 780 1 3444 198 73 28 chr13 66038667 66039158 -53705740 - L1MB2 LINE L1 -809 5362 4895 21 0 0 0 chr13 66043083 66043104 -53701794 + AT_rich Low_complexity Low_complexity 1 21 0 1469 207 14 20 chr13 66043572 66043867 -53701031 + AluJo SINE Alu 1 293 -19 5134 218 45 11 chr13 66044076 66046385 -53698513 - L1MC1 LINE L1 -1 6332 3958 7531 27 6 0 chr13 66046387 66047826 -53697072 - L1PA4 LINE L1 -2 6153 4710 5041 35 0 0 chr13 66047826 66048435 -53696463 + L1P LINE L1 3512 4120 -2026 246 241 129 17 chr13 66048588 66048704 -53696194 + MER103 DNA DNA 33 161 -5 472 346 66 0 chr13 66048843 66049025 -53695873 + MIR SINE MIR 67 260 -2 1941 99 70 0 chr13 66049575 66049859 -53695039 - AluSx SINE Alu -8 304 1 31 26 0 0 chr13 66051288 66051326 -53693572 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr13 66051378 66051410 -53693488 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr13 66051455 66051496 -53693402 + AT_rich Low_complexity Low_complexity 1 41 0 537 265 126 14 chr13 66051946 66052161 -53692737 - MIR SINE MIR -21 241 3 274 348 0 0 chr13 66052168 66052286 -53692612 - L1MC/D LINE L1 -1969 5839 5722 216 378 37 15 chr13 66052527 66052662 -53692236 - L3 LINE CR1 -811 766 629 197 280 121 38 chr13 66052773 66052905 -53691993 - MIR SINE MIR -15 247 105 2006 142 0 3 chr13 66053166 66053475 -53691423 + AluSg SINE Alu 1 308 -2 223 374 79 0 chr13 66054082 66054221 -53690677 + L2 LINE L2 3121 3270 -2 7409 31 3 3 chr13 66055112 66056284 -53688614 + L1PA3 LINE L1 4982 6155 0 36 23 0 0 chr13 66057606 66057649 -53687249 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr13 66057943 66057969 -53686929 + AT_rich Low_complexity Low_complexity 1 26 0 388 211 54 75 chr13 66058730 66058877 -53686021 + MIR SINE MIR 91 234 -28 1067 292 67 20 chr13 66059186 66059682 -53685216 - L1ME3 LINE L1 -216 5946 5428 510 326 84 30 chr13 66059776 66060110 -53684788 + LTR16B LTR ERVL 113 464 0 330 306 34 23 chr13 66060112 66060422 -53684476 - L1ME3 LINE L1 -721 5449 5127 513 296 45 46 chr13 66060515 66061075 -53683823 + L1M4 LINE L1 3855 4413 -1733 2061 202 39 20 chr13 66061158 66061599 -53683299 - MER74C LTR ERVL -2 458 10 717 313 30 22 chr13 66061639 66062000 -53682898 - L1ME3 LINE L1 -2280 3866 3503 23 68 0 0 chr13 66062431 66062475 -53682423 + AT_rich Low_complexity Low_complexity 1 44 0 1968 112 3 14 chr13 66062656 66062969 -53681929 + AluSx SINE Alu 1 310 0 1799 172 30 113 chr13 66063035 66063600 -53681298 - L1MA7 LINE L1 0 6291 5774 34 89 0 0 chr13 66063611 66063701 -53681197 + AT_rich Low_complexity Low_complexity 1 90 0 183 302 19 0 chr13 66065770 66065823 -53679075 + L3 LINE CR1 1065 1118 -459 1988 97 14 0 chr13 66066781 66067059 -53677839 - AluY SINE Alu -29 282 1 1482 179 26 62 chr13 66067059 66067399 -53677499 - MLT1A1 LTR MaLR -33 332 5 358 279 26 6 chr13 66067512 66067667 -53677231 + MER110A LTR ERV1 340 477 0 220 250 29 0 chr13 66067877 66067945 -53676953 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 22 80 0 0 chr13 66069510 66069560 -53675338 + AT_rich Low_complexity Low_complexity 1 50 0 24 67 0 0 chr13 66070823 66070868 -53674030 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr13 66070926 66070956 -53673942 + AT_rich Low_complexity Low_complexity 1 30 0 300 277 101 25 chr13 66071580 66071699 -53673199 - LTR16A LTR ERVL -81 369 242 262 257 43 0 chr13 66071763 66071833 -53673065 - LTR16A LTR ERVL -322 128 56 21 0 0 0 chr13 66072009 66072030 -53672868 + AT_rich Low_complexity Low_complexity 1 21 0 1716 186 65 0 chr13 66072270 66072592 -53672306 - MER7A DNA MER2_type -5 341 1 835 243 75 32 chr13 66072592 66072995 -53671903 + Charlie1 DNA MER1_type 1651 2121 -640 1476 177 25 15 chr13 66073233 66073560 -53671338 - L1 LINE L1 -1318 4828 4499 6728 231 18 4 chr13 66073560 66075203 -53669695 + L1 LINE L1 2809 4473 -1673 14314 105 27 4 chr13 66126656 66128801 -53616097 + HERVL-A2 LTR ERVL 3461 5654 0 1882 185 45 29 chr13 66128801 66129340 -53615558 + MLT2A2 LTR ERVL 1 547 -7 518 318 132 31 chr13 66129340 66129924 -53614974 + L2 LINE L2 2572 3223 -90 31 0 0 0 chr13 66129941 66129972 -53614926 + AT_rich Low_complexity Low_complexity 1 31 0 2022 138 7 0 chr13 66130567 66130856 -53614042 + AluSx SINE Alu 1 291 -21 1544 27 0 11 chr13 66131576 66131762 -53613136 + L1PA3 LINE L1 5969 6152 -3 1235 221 104 30 chr13 66132010 66132412 -53612486 - MLT1C LTR MaLR 0 467 36 180 327 115 35 chr13 66135433 66135546 -53609352 + L2 LINE L2 3192 3313 0 261 275 27 77 chr13 66136657 66136963 -53607935 - LTR41 LTR ERVL 0 795 494 319 241 22 138 chr13 66137989 66138309 -53606589 - LTR41 LTR ERVL -11 762 480 329 233 185 7 chr13 66138366 66138512 -53606386 - MER53 DNA DNA -17 172 1 267 246 70 70 chr13 66138593 66138735 -53606163 - LTR41 LTR ERVL -629 144 3 23 33 0 0 chr13 66138828 66138858 -53606040 + AT_rich Low_complexity Low_complexity 1 30 0 2432 167 33 10 chr13 66139576 66140062 -53604836 + L1MA9 LINE L1 5461 5957 -355 331 237 82 37 chr13 66140169 66140304 -53604594 + L2 LINE L2 2369 2509 -805 4609 93 10 16 chr13 66140318 66140992 -53603906 + LTR8 LTR ERV1 1 670 -21 1888 172 44 37 chr13 66140993 66141529 -53603369 + MLT2A2 LTR ERVL 11 554 0 12374 127 19 38 chr13 66141529 66142660 -53602238 + HERVL-A2 LTR ERVL 1 1155 -4499 487 173 0 0 chr13 66142660 66142770 -53602128 + AluSp/q SINE Alu 204 313 0 12374 127 19 38 chr13 66142770 66143730 -53601168 + HERVL-A2 LTR ERVL 1155 2132 -3522 234 342 53 9 chr13 66144399 66144513 -53600385 + MIR3 SINE MIR 42 160 -48 305 303 73 0 chr13 66144865 66144974 -53599924 + L2 LINE L2 3148 3264 -8 315 316 97 88 chr13 66145718 66146174 -53598724 + L1M2 LINE L1 460 919 -5930 236 246 0 0 chr13 66146544 66146601 -53598297 - MER69 DNA AcHobo 0 2526 2470 2656 79 63 21 chr13 66149543 66149973 -53594925 + LTR7 LTR ERV1 1 448 -2 18962 91 27 15 chr13 66149975 66152934 -53591964 + HERVH LTR ERV1 1 2995 -4718 858 140 7 0 chr13 66152913 66153063 -53591835 + HERVH LTR ERV1 3140 3290 -4423 * 3182 111 2 4 chr13 66153062 66153557 -53591341 + HERVH LTR ERV1 3500 3993 -3720 4107 141 3 1 chr13 66153559 66154220 -53590678 + HERVH LTR ERV1 4488 5149 -2564 1274 142 18 9 chr13 66154221 66154439 -53590459 + HERVH LTR ERV1 5600 5819 -1894 2501 58 45 13 chr13 66154439 66154817 -53590081 + HERVH LTR ERV1 7324 7713 0 2713 86 58 21 chr13 66154817 66155249 -53589649 + LTR7 LTR ERV1 1 448 -2 1864 158 14 3 chr13 66155361 66155658 -53589240 + AluSx SINE Alu 5 304 -8 2060 131 7 0 chr13 66155892 66156183 -53588715 + AluSx SINE Alu 4 296 -16 994 156 6 0 chr13 66157950 66158129 -53586769 - L1PB4 LINE L1 -108 6048 5869 22 35 0 0 chr13 66158419 66158448 -53586450 + AT_rich Low_complexity Low_complexity 1 29 0 201 302 0 0 chr13 66158846 66158889 -53586009 - L2 LINE L2 -62 3210 3168 219 103 0 0 chr13 66159018 66159057 -53585841 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1895 127 7 7 chr13 66159060 66159343 -53585555 - AluSx SINE Alu -29 283 1 571 248 48 19 chr13 66159344 66159550 -53585348 - L1ME2 LINE L1 -44 6120 5909 232 184 41 20 chr13 66161077 66161126 -53583772 - MER5A DNA MER1_type -25 164 115 * 311 352 42 14 chr13 66161083 66161225 -53583673 + MER5A DNA MER1_type 43 188 -1 270 298 124 12 chr13 66161474 66161635 -53583263 + L2 LINE L2 28 206 -3108 305 277 0 54 chr13 66161646 66161794 -53583104 + L2 LINE L2 3087 3226 -87 30 59 0 0 chr13 66162132 66162183 -53582715 + AT_rich Low_complexity Low_complexity 1 51 0 928 191 0 36 chr13 66162295 66162489 -53582409 - AluSg/x SINE Alu -3 306 120 207 356 22 22 chr13 66162605 66162740 -53582158 + L2 LINE L2 2685 2819 -495 198 370 74 15 chr13 66162848 66162983 -53581915 + L2 LINE L2 2918 3060 -212 22 0 0 0 chr13 66163233 66163255 -53581643 + AT_rich Low_complexity Low_complexity 1 22 0 2575 10 51 0 chr13 66164899 66165192 -53579706 - AluYa5 SINE Alu -3 308 1 206 167 0 24 chr13 66165924 66165966 -53578932 + T-rich Low_complexity Low_complexity 3 43 0 336 24 0 0 chr13 66166029 66166070 -53578828 + (TA)n Simple_repeat Simple_repeat 2 42 0 462 65 0 0 chr13 66166070 66166132 -53578766 + (GA)n Simple_repeat Simple_repeat 1 62 0 1388 235 101 2 chr13 66166135 66166641 -53578257 - MLT2F LTR ERVL -55 608 5 992 167 25 0 chr13 66167479 66167641 -53577257 + AluSg/x SINE Alu 135 300 -12 1642 137 4 0 chr13 66167767 66168001 -53576897 - AluSq SINE Alu -76 237 3 1215 225 13 23 chr13 66168172 66168474 -53576424 + AluJo SINE Alu 2 300 -2 34 0 0 0 chr13 66168519 66168553 -53576345 + AT_rich Low_complexity Low_complexity 1 34 0 28 29 0 0 chr13 66168991 66169026 -53575872 + AT_rich Low_complexity Low_complexity 1 35 0 1246 186 16 25 chr13 66169105 66169347 -53575551 + MLT1D LTR MaLR 266 505 0 939 161 19 12 chr13 66169419 66169581 -53575317 + FRAM SINE Alu 1 163 -13 30 0 0 0 chr13 66172113 66172143 -53572755 + AT_rich Low_complexity Low_complexity 1 30 0 3522 109 77 94 chr13 66172279 66173046 -53571852 + LTR1 LTR ERV1 32 785 0 384 283 29 21 chr13 66173210 66173350 -53571548 + MLT1I LTR MaLR 308 402 -7 726 200 21 0 chr13 66174057 66174227 -53570671 + AluSg/x SINE Alu 134 306 0 288 227 45 0 chr13 66174245 66174311 -53570587 + MLT1I LTR MaLR 97 165 -244 321 271 10 10 chr13 66174425 66174521 -53570377 + MLT1I LTR MaLR 308 403 -6 489 100 0 0 chr13 66174847 66174917 -53569981 - MSTB LTR MaLR 0 426 357 1181 232 86 11 chr13 66174917 66175197 -53569701 + AluJo SINE Alu 2 302 -10 1560 183 148 6 chr13 66175197 66175514 -53569384 - MSTB LTR MaLR -64 362 1 23 33 0 0 chr13 66175679 66175709 -53569189 + AT_rich Low_complexity Low_complexity 1 30 0 3715 128 0 12 chr13 66176019 66176614 -53568284 + HERVH LTR ERV1 2400 2987 -4726 851 162 20 0 chr13 66176608 66176756 -53568142 + HERVH LTR ERV1 3140 3290 -4423 * 3398 103 2 4 chr13 66176755 66177250 -53567648 + HERVH LTR ERV1 3500 3993 -3720 4232 143 6 1 chr13 66177252 66177911 -53566987 + HERVH LTR ERV1 4488 5149 -2564 1403 117 18 27 chr13 66177912 66178134 -53566764 + HERVH LTR ERV1 5600 5819 -1894 * 2543 83 45 0 chr13 66178132 66178507 -53566391 + HERVH LTR ERV1 7322 7713 0 3378 64 0 7 chr13 66178507 66178958 -53565940 + LTR7 LTR ERV1 1 448 -2 2135 177 123 43 chr13 66179004 66179579 -53565319 + L1MA8 LINE L1 5651 6271 -20 708 205 41 41 chr13 66179859 66179911 -53564987 - MER45A DNA AcHobo -1406 175 124 2224 143 31 14 chr13 66179911 66180268 -53564630 - THE1B LTR MaLR -1 363 1 708 205 41 41 chr13 66180268 66180386 -53564512 - MER45A DNA AcHobo -1456 125 5 509 263 26 116 chr13 66180772 66181004 -53563894 - MLT1I LTR MaLR -1 408 198 436 274 222 13 chr13 66181239 66181469 -53563429 + L2 LINE L2 2315 2592 -722 1661 149 4 0 chr13 66181502 66181764 -53563134 - THE1C LTR MaLR 0 375 113 309 347 116 31 chr13 66182148 66182373 -53562525 - MIR SINE MIR -13 249 6 2243 119 0 0 chr13 66182373 66182675 -53562223 + AluSx SINE Alu 1 302 -10 256 336 66 22 chr13 66182886 66183023 -53561875 - L2 LINE L2 -845 2469 2327 369 365 77 18 chr13 66183147 66183369 -53561529 + MLT1K LTR MaLR 142 376 -212 5990 183 208 3 chr13 66184344 66185586 -53559312 - MER52A LTR ERV1 -259 1496 1 8403 157 16 12 chr13 66186652 66187498 -53557400 + L1M1 LINE L1 1221 2076 -5489 2043 152 18 37 chr13 66187498 66187880 -53557018 + THE1C LTR MaLR 1 375 0 8403 157 16 12 chr13 66187880 66188437 -53556461 + L1M1 LINE L1 2076 2629 -4936 1837 250 7 22 chr13 66188434 66188832 -53556066 + L1M1 LINE L1 3944 4333 -3232 * 1685 180 3 16 chr13 66188832 66189138 -53555760 + AluJo SINE Alu 3 304 -8 1837 250 7 22 chr13 66189138 66189287 -53555611 + L1M1 LINE L1 4333 4483 -3082 21 0 0 0 chr13 66189566 66189587 -53555311 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chr13 66189764 66189800 -53555098 + (TG)n Simple_repeat Simple_repeat 1 36 0 1874 146 4 4 chr13 66189812 66190087 -53554811 - AluSq SINE Alu -33 280 6 241 171 122 0 chr13 66190218 66190300 -53554598 + L1MC4 LINE L1 6612 6703 -1339 23 33 0 0 chr13 66191419 66191449 -53553449 + AT_rich Low_complexity Low_complexity 1 30 0 192 245 19 19 chr13 66191826 66191879 -53553019 + MIR SINE MIR 62 114 -148 22 35 0 0 chr13 66192131 66192160 -53552738 + AT_rich Low_complexity Low_complexity 1 29 0 3696 146 72 81 chr13 66192160 66192527 -53552371 - L1PB4 LINE L1 -7 6149 5780 180 0 0 0 chr13 66192527 66192547 -53552351 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3696 146 72 81 chr13 66192547 66192601 -53552297 - L1PB4 LINE L1 -376 5780 5727 419 35 18 0 chr13 66192601 66192658 -53552240 + (CA)n Simple_repeat Simple_repeat 2 59 0 3696 146 72 81 chr13 66192658 66193233 -53551665 - L1PB4 LINE L1 -429 5727 5156 37 39 0 0 chr13 66193543 66193594 -53551304 + AT_rich Low_complexity Low_complexity 1 51 0 219 168 34 67 chr13 66194034 66194153 -53550745 + (TA)n Simple_repeat Simple_repeat 1 115 0 481 280 52 62 chr13 66196412 66196798 -53548100 + L1MC5 LINE L1 7352 7733 -228 204 125 0 0 chr13 66196817 66196849 -53548049 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 418 205 0 0 chr13 66196919 66196997 -53547901 + MER52A LTR ERV1 1 78 -1677 6791 201 99 20 chr13 66196998 66198418 -53546480 + MER52A LTR ERV1 224 1755 0 730 290 219 18 chr13 66198659 66199236 -53545662 + L2 LINE L2 2357 3050 -263 36 70 0 0 chr13 66199262 66199333 -53545565 + AT_rich Low_complexity Low_complexity 1 71 0 1972 143 7 3 chr13 66199840 66200200 -53544698 - AluY SINE Alu 0 361 1 26 64 0 0 chr13 66200325 66200372 -53544526 + AT_rich Low_complexity Low_complexity 1 47 0 2116 120 3 10 chr13 66200412 66200721 -53544177 + AluSx SINE Alu 6 312 0 26 0 0 67 chr13 66200983 66201028 -53543870 + AT_rich Low_complexity Low_complexity 1 42 0 34 79 0 0 chr13 66202227 66202303 -53542595 + AT_rich Low_complexity Low_complexity 1 76 0 241 361 137 15 chr13 66203039 66203244 -53541654 - MIR SINE MIR -28 234 5 24 32 0 0 chr13 66203442 66203473 -53541425 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 66204106 66204130 -53540768 + AT_rich Low_complexity Low_complexity 1 24 0 218 186 0 0 chr13 66204948 66204991 -53539907 + T-rich Low_complexity Low_complexity 2 44 0 32 67 0 0 chr13 66205107 66205167 -53539731 + AT_rich Low_complexity Low_complexity 1 60 0 24 67 0 0 chr13 66205342 66205387 -53539511 + AT_rich Low_complexity Low_complexity 1 45 0 267 298 12 24 chr13 66205400 66205484 -53539414 - L2 LINE L2 0 3272 3190 1884 253 48 31 chr13 66205508 66205653 -53539245 - MER90 LTR ERV1 0 614 473 2051 159 125 8 chr13 66205653 66206036 -53538862 - MSTA LTR MaLR 0 428 1 1884 253 48 31 chr13 66206036 66206494 -53538404 - MER90 LTR ERV1 -141 473 1 201 121 0 0 chr13 66208739 66208772 -53536126 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1689 178 27 27 chr13 66209528 66209893 -53535005 + MLT1A1 LTR MaLR 1 365 0 25 65 0 0 chr13 66209925 66209971 -53534927 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr13 66209997 66210020 -53534878 + AT_rich Low_complexity Low_complexity 1 23 0 7562 197 93 21 chr13 66210813 66212451 -53532447 + MER52A LTR ERV1 1 1755 0 257 294 83 9 chr13 66213402 66213511 -53531387 + L2 LINE L2 3197 3313 0 628 258 36 48 chr13 66213789 66214041 -53530857 - L2 LINE L2 -2 3311 3063 26 30 0 0 chr13 66214235 66214268 -53530630 + AT_rich Low_complexity Low_complexity 1 33 0 449 365 84 36 chr13 66215082 66215520 -53529378 + LTR33A LTR ERVL 65 523 0 829 156 6 6 chr13 66215959 66216132 -53528766 + GA-rich Low_complexity Low_complexity 4 176 0 269 232 37 12 chr13 66216398 66216480 -53528418 + MLT1K LTR MaLR 505 588 0 333 0 0 0 chr13 66217371 66217408 -53527490 + (CA)n Simple_repeat Simple_repeat 2 38 0 8774 115 21 2 chr13 66217753 66219015 -53525883 - HSMAR1 DNA Mariner -1 1286 1 27 73 0 0 chr13 66219128 66219183 -53525715 + AT_rich Low_complexity Low_complexity 1 55 0 28 107 0 0 chr13 66220952 66221064 -53523834 + AT_rich Low_complexity Low_complexity 1 112 0 212 59 29 0 chr13 66221828 66221862 -53523036 + (TA)n Simple_repeat Simple_repeat 1 35 0 324 188 0 0 chr13 66221898 66221967 -53522931 + CT-rich Low_complexity Low_complexity 4 72 0 356 206 20 39 chr13 66222011 66222113 -53522785 - MER20 DNA MER1_type -5 214 115 208 351 54 40 chr13 66222214 66222362 -53522536 + L3 LINE CR1 419 568 -1009 * 226 273 30 15 chr13 66222335 66222401 -53522497 - L2 LINE L2 0 3313 3247 254 314 149 0 chr13 66222416 66222537 -53522361 + L3 LINE CR1 563 701 -876 372 329 47 24 chr13 66223068 66223238 -53521660 + LTR16A LTR ERVL 25 198 -252 272 172 0 16 chr13 66224937 66225001 -53519897 + (TA)n Simple_repeat Simple_repeat 2 64 0 26 74 0 0 chr13 66226403 66226457 -53518441 + AT_rich Low_complexity Low_complexity 1 54 0 253 345 50 22 chr13 66227649 66227788 -53517110 + MIR SINE MIR 69 211 -51 942 280 213 1 chr13 66227941 66228440 -53516458 - MLT1E1 LTR MaLR 0 654 1 500 205 24 0 chr13 66229736 66229902 -53514996 + (TA)n Simple_repeat Simple_repeat 1 170 0 194 143 29 29 chr13 66230114 66230184 -53514714 + (TA)n Simple_repeat Simple_repeat 2 71 0 366 306 25 25 chr13 66231117 66231277 -53513621 + ERVL LTR ERVL 3409 3568 -2196 1088 251 78 105 chr13 66231418 66231784 -53513114 - MLT1C LTR MaLR -2 465 32 552 89 0 0 chr13 66231784 66231863 -53513035 - MADE1 DNA Mariner -1 79 1 1088 251 78 105 chr13 66231863 66231895 -53513003 - MLT1C LTR MaLR -435 32 1 382 367 47 64 chr13 66231969 66232085 -53512813 + ERVL LTR ERVL 3894 4010 -1754 1945 144 3 3 chr13 66232085 66232383 -53512515 + AluSx SINE Alu 1 298 -14 382 367 47 64 chr13 66232383 66232457 -53512441 + ERVL LTR ERVL 4010 4084 -1680 2292 102 0 0 chr13 66232457 66232761 -53512137 + AluSq SINE Alu 1 304 -9 382 367 47 64 chr13 66232761 66233166 -53511732 + ERVL LTR ERVL 4084 4480 -1284 308 336 17 0 chr13 66233442 66233558 -53511340 + ERVL LTR ERVL 4758 4875 -610 403 259 75 40 chr13 66234233 66234407 -53510491 + LTR16C LTR ERVL 312 491 0 851 295 115 24 chr13 66234857 66235405 -53509493 - L2 LINE L2 -1 3312 2726 24 0 0 0 chr13 66236092 66236116 -53508782 + AT_rich Low_complexity Low_complexity 1 24 0 2240 74 3 46 chr13 66237442 66237767 -53507131 - AluY SINE Alu 0 311 1 26 50 0 0 chr13 66238733 66238773 -53506125 + AT_rich Low_complexity Low_complexity 1 40 0 524 185 22 0 chr13 66239062 66239148 -53505750 + MLT1C LTR MaLR 1 88 -379 1565 124 80 0 chr13 66239148 66239397 -53505501 + MER7A DNA MER2_type 2 268 -78 318 315 103 75 chr13 66239437 66239650 -53505248 + L2 LINE L2 2849 3067 -246 335 260 0 13 chr13 66239676 66239753 -53505145 + MER7A DNA MER2_type 271 346 0 1115 235 63 70 chr13 66239753 66240136 -53504762 + MLT1C LTR MaLR 86 465 -2 577 352 129 31 chr13 66240241 66240918 -53503980 + L2 LINE L2 2334 3067 -246 221 375 31 21 chr13 66241053 66241149 -53503749 + L2 LINE L2 3136 3232 -40 245 197 15 0 chr13 66241169 66241235 -53503663 + GA-rich Low_complexity Low_complexity 2 68 0 555 167 0 0 chr13 66241646 66241748 -53503150 - AluJb SINE Alu -2 310 209 271 312 58 7 chr13 66243413 66243551 -53501347 + MIR SINE MIR 63 207 -55 275 399 115 12 chr13 66243791 66244122 -53500776 - L3 LINE CR1 -47 1530 1166 710 59 0 0 chr13 66244683 66244806 -53500092 - AluY SINE Alu 0 329 207 212 316 18 53 chr13 66244812 66244926 -53499972 - MIR SINE MIR -69 139 30 21 0 0 0 chr13 66246078 66246099 -53498799 + AT_rich Low_complexity Low_complexity 1 21 0 329 277 4 36 chr13 66246108 66246272 -53498626 + T-rich Low_complexity Low_complexity 1 158 0 2802 200 52 2 chr13 66246551 66247126 -53497772 - MER6A DNA MER2_type 0 605 2 665 277 135 12 chr13 66247259 66247584 -53497314 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr13 66247706 66247728 -53497170 + AT_rich Low_complexity Low_complexity 1 22 0 538 37 25 12 chr13 66248127 66248208 -53496690 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 2070 194 11 6 chr13 66248824 66249251 -53495647 + LTR42 LTR ERVL 1 495 0 2451 203 90 35 chr13 66249279 66249934 -53494964 - LTR8 LTR ERV1 0 691 1 467 271 211 28 chr13 66250217 66250707 -53494191 + LTR50 LTR ERVL 12 683 -112 228 147 0 59 chr13 66250712 66250780 -53494118 + L1MC4 LINE L1 6640 6703 -1339 276 149 0 0 chr13 66250784 66250831 -53494067 + (TA)n Simple_repeat Simple_repeat 1 47 0 651 319 73 45 chr13 66251692 66252156 -53492742 - MLT1G1 LTR MaLR -36 559 2 2163 106 0 7 chr13 66252224 66252517 -53492381 - AluSx SINE Alu -21 291 1 189 0 0 0 chr13 66252607 66252628 -53492270 + (TA)n Simple_repeat Simple_repeat 1 21 0 30 59 0 0 chr13 66252687 66252738 -53492160 + AT_rich Low_complexity Low_complexity 1 51 0 486 260 12 46 chr13 66253007 66253180 -53491718 + L1MC5 LINE L1 7757 7923 -38 2064 125 10 0 chr13 66254326 66254629 -53490269 - AluSg1 SINE Alu -3 306 1 531 282 18 24 chr13 66255084 66255254 -53489644 + L1MDa LINE L1 19 187 -6353 * 3135 217 34 41 chr13 66255252 66256223 -53488675 + L1MD1 LINE L1 5093 6053 -189 309 325 33 13 chr13 66256342 66256493 -53488405 + L1MD2 LINE L1 6190 6343 -16 1631 222 27 35 chr13 66256778 66257184 -53487714 - L1MD1 LINE L1 -335 5907 5505 257 264 0 23 chr13 66257720 66257807 -53487091 + L1MC4 LINE L1 6619 6703 -1339 24 53 0 0 chr13 66260460 66260498 -53484400 + AT_rich Low_complexity Low_complexity 1 38 0 708 133 127 17 chr13 66261540 66261713 -53483185 + L1MA9 LINE L1 6074 6265 -47 21 36 0 0 chr13 66261959 66261987 -53482911 + AT_rich Low_complexity Low_complexity 1 28 0 1147 206 22 0 chr13 66262009 66262237 -53482661 + MER46A DNA MER2_type 4 236 0 200 263 40 13 chr13 66262360 66262436 -53482462 + (TATG)n Simple_repeat Simple_repeat 3 80 0 482 103 13 0 chr13 66262638 66262716 -53482182 + (GGGAGA)n Simple_repeat Simple_repeat 6 84 0 266 224 13 13 chr13 66264459 66264535 -53480363 - L1MA8 LINE L1 -2 7708 7633 200 182 0 18 chr13 66264535 66264590 -53480308 + (TA)n Simple_repeat Simple_repeat 2 55 0 183 125 18 36 chr13 66264635 66264691 -53480207 + (TA)n Simple_repeat Simple_repeat 1 55 0 12193 191 77 30 chr13 66264892 66265205 -53479693 - L1MA8 LINE L1 -84 7626 7329 1202 61 12 0 chr13 66265205 66265368 -53479530 + (CATAA)n Simple_repeat Simple_repeat 3 167 0 12193 191 77 30 chr13 66265368 66268887 -53476011 - L1MA8 LINE L1 -381 7329 3605 2907 255 56 24 chr13 66268893 66270099 -53474799 - L1MA8 LINE L1 -4127 3438 2259 213 313 50 12 chr13 66270099 66270179 -53474719 + MER5A DNA MER1_type 89 171 -18 32 43 0 0 chr13 66270200 66270246 -53474652 + AT_rich Low_complexity Low_complexity 1 46 0 25 65 0 0 chr13 66270700 66270746 -53474152 + AT_rich Low_complexity Low_complexity 1 46 0 1141 142 16 0 chr13 66271096 66271279 -53473619 - MER30B DNA MER1_type -4 186 1 4571 212 13 9 chr13 66272749 66274382 -53470516 - L1PA16 LINE L1 -2 6221 3518 2204 124 52 19 chr13 66274382 66274745 -53470153 + THE1C LTR MaLR 1 375 0 1061 76 6 19 chr13 66274745 66274903 -53469995 + THE1C-int LTR MaLR 1 156 -1424 813 103 24 0 chr13 66274900 66275026 -53469872 + THE1C-int LTR MaLR 97 225 -1355 * 1096 127 44 74 chr13 66275025 66275254 -53469644 - L1PA16 LINE L1 -4250 1953 1732 1367 176 8 49 chr13 66275254 66275499 -53469399 - MER1B DNA MER1_type -62 235 1 3687 222 138 9 chr13 66275499 66276581 -53468317 - L1PA16 LINE L1 -4488 1715 400 348 307 63 48 chr13 66276786 66277056 -53467842 - L1MA8 LINE L1 -5783 1783 1510 230 275 50 44 chr13 66277274 66277434 -53467464 - L1PA12 LINE L1 -5566 2015 1855 543 346 17 48 chr13 66277627 66278046 -53466852 - L1PA12 LINE L1 -7166 415 10 3823 90 17 9 chr13 66278507 66279050 -53465848 + L1PA8 LINE L1 5626 6172 0 244 291 133 20 chr13 66279659 66279810 -53465088 + MIR SINE MIR 33 200 -62 263 367 50 6 chr13 66280621 66280801 -53464097 - MIR SINE MIR -64 198 11 211 289 22 67 chr13 66281003 66281093 -53463805 + L2 LINE L2 2962 3047 -225 224 301 48 24 chr13 66281248 66281331 -53463567 + L2 LINE L2 3153 3237 -35 1496 206 0 11 chr13 66281333 66281615 -53463283 + AluJb SINE Alu 1 279 -33 2831 100 40 7 chr13 66281615 66282044 -53462854 + MLT2A1 LTR ERVL 2 444 0 23 0 0 0 chr13 66282049 66282072 -53462826 + AT_rich Low_complexity Low_complexity 1 23 0 217 349 56 8 chr13 66283494 66283620 -53461278 - L2 LINE L2 -3 3310 3179 1090 190 62 4 chr13 66283754 66283980 -53460918 + L1MC1 LINE L1 6086 6324 -9 23 0 0 0 chr13 66284097 66284120 -53460778 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr13 66284530 66284560 -53460338 + AT_rich Low_complexity Low_complexity 1 30 0 225 0 0 0 chr13 66284766 66284791 -53460107 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 286 222 22 33 chr13 66285036 66285126 -53459772 + GA-rich Low_complexity Low_complexity 2 90 0 24 0 0 0 chr13 66285259 66285283 -53459615 + AT_rich Low_complexity Low_complexity 1 24 0 398 370 46 58 chr13 66285759 66286265 -53458633 - L2 LINE L2 -52 3220 2718 227 321 57 38 chr13 66286404 66286510 -53458388 - MER91A DNA MER1_type -83 113 6 203 329 59 0 chr13 66286854 66286939 -53457959 - MIR SINE MIR -12 250 161 1597 160 0 48 chr13 66287110 66287403 -53457495 + AluJb SINE Alu 34 312 0 28 29 0 0 chr13 66287721 66287756 -53457142 + AT_rich Low_complexity Low_complexity 1 35 0 4086 193 19 10 chr13 66288430 66289632 -53455266 + L1MC1 LINE L1 4832 6040 -293 678 162 0 0 chr13 66289664 66289769 -53455129 + Tigger1 DNA MER2_type 2313 2417 -1 463 291 96 59 chr13 66289875 66290363 -53454535 - L1ME LINE L1 -348 5822 5317 1418 172 44 7 chr13 66290441 66290572 -53454326 + AluSx SINE Alu 3 128 -184 1009 13 57 6 chr13 66290572 66290730 -53454168 + (TAAAA)n Simple_repeat Simple_repeat 2 167 0 1418 172 44 7 chr13 66290730 66290894 -53454004 + AluSx SINE Alu 128 309 -3 607 123 0 16 chr13 66290906 66290945 -53453953 + (GGAA)n Simple_repeat Simple_repeat 2 40 -81 1995 105 7 30 chr13 66290945 66291250 -53453648 + AluY SINE Alu 1 298 -13 607 123 0 16 chr13 66291250 66291332 -53453566 + (GGAA)n Simple_repeat Simple_repeat 40 121 0 633 239 0 22 chr13 66291355 66291508 -53453390 - FLAM_A SINE Alu 0 133 1 227 230 8 79 chr13 66291516 66291642 -53453256 - L1ME LINE L1 -903 5243 5127 27 29 0 0 chr13 66292214 66292248 -53452650 + AT_rich Low_complexity Low_complexity 1 34 0 1461 215 0 27 chr13 66292618 66292916 -53451982 - AluJb SINE Alu -17 295 6 460 236 8 55 chr13 66294277 66294404 -53450494 - LTR28 LTR ERV1 0 1020 900 1524 216 74 111 chr13 66294481 66295248 -53449650 - LTR1B LTR ERV1 -81 745 7 2335 302 223 14 chr13 66295248 66296488 -53448410 - L2 LINE L2 -1291 2023 525 2727 146 20 2 chr13 66296489 66296948 -53447950 + L1P LINE L1 3856 4322 -1824 503 193 46 0 chr13 66296956 66297065 -53447833 - MLT1C LTR MaLR -353 114 1 588 201 97 8 chr13 66297108 66297242 -53447656 - MLT1C LTR MaLR -316 151 6 1555 112 0 0 chr13 66297434 66297648 -53447250 + AluSx SINE Alu 1 214 -98 2138 73 44 0 chr13 66297853 66298146 -53446752 - AluY SINE Alu 0 305 1 21 0 0 0 chr13 66300002 66300023 -53444875 + AT_rich Low_complexity Low_complexity 1 21 0 378 91 0 0 chr13 66301093 66301148 -53443750 + (CA)n Simple_repeat Simple_repeat 2 56 0 321 296 32 17 chr13 66302214 66302396 -53442502 + L1MCc LINE L1 8 533 -5889 321 136 25 25 chr13 66302712 66302793 -53442105 + GA-rich Low_complexity Low_complexity 4 84 0 2463 216 49 13 chr13 66302891 66303503 -53441395 + L1MD3 LINE L1 7353 7986 -9 21 0 0 0 chr13 66303637 66303658 -53441240 + AT_rich Low_complexity Low_complexity 1 21 0 458 264 138 13 chr13 66304364 66304523 -53440375 + MER5A DNA MER1_type 11 189 0 600 340 68 0 chr13 66305025 66305260 -53439638 - MIR SINE MIR -4 258 8 180 0 0 0 chr13 66305494 66305514 -53439384 + (TC)n Simple_repeat Simple_repeat 1 20 0 318 50 0 0 chr13 66305515 66305555 -53439343 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr13 66305884 66305913 -53438985 + AT_rich Low_complexity Low_complexity 1 29 0 691 250 22 9 chr13 66306075 66306299 -53438599 + L1M4 LINE L1 4216 4442 -1704 351 239 0 0 chr13 66306299 66306387 -53438511 + (TA)n Simple_repeat Simple_repeat 1 88 0 309 282 10 19 chr13 66306416 66306519 -53438379 + L1M4 LINE L1 4495 4596 -1550 2358 98 0 0 chr13 66307223 66307528 -53437370 - AluSx SINE Alu -7 305 1 526 281 152 0 chr13 66307792 66307956 -53436942 + MIR3 SINE MIR 19 207 -1 23 0 0 0 chr13 66309008 66309031 -53435867 + AT_rich Low_complexity Low_complexity 1 23 0 312 322 49 7 chr13 66309596 66309739 -53435159 + MIR SINE MIR 100 248 -14 817 213 6 6 chr13 66310003 66310167 -53434731 - FRAM SINE Alu -12 164 1 28 0 0 0 chr13 66310607 66310635 -53434263 + AT_rich Low_complexity Low_complexity 1 28 0 1539 164 6 61 chr13 66312242 66312554 -53432344 + AluJb SINE Alu 7 301 -11 29 75 0 21 chr13 66312677 66312748 -53432150 + AT_rich Low_complexity Low_complexity 1 71 -20 1888 201 45 2 chr13 66312748 66313151 -53431747 - L1MA6 LINE L1 0 6300 5881 29 75 0 21 chr13 66313151 66313172 -53431726 + AT_rich Low_complexity Low_complexity 71 91 0 190 343 108 20 chr13 66314109 66314211 -53430687 - L2 LINE L2 -199 3073 2963 2087 123 19 13 chr13 66317160 66317470 -53427428 + AluSx SINE Alu 1 312 0 233 380 0 0 chr13 66317728 66317799 -53427099 - L3 LINE CR1 -477 1100 1030 296 329 113 9 chr13 66317815 66317863 -53427035 - MIR SINE MIR -15 247 205 577 281 108 16 chr13 66317863 66318169 -53426729 + MER46C DNA MER2_type 5 338 0 296 329 113 9 chr13 66318169 66318215 -53426683 - MIR SINE MIR -57 205 165 2286 111 13 49 chr13 66318215 66318602 -53426296 - THE1C LTR MaLR -2 373 1 296 329 113 9 chr13 66318602 66318719 -53426179 - MIR SINE MIR -97 165 13 2080 52 8 0 chr13 66318995 66319262 -53425636 - L1PA7 LINE L1 0 6154 5886 230 336 26 35 chr13 66319984 66320100 -53424798 - L2 LINE L2 0 3313 3199 540 256 0 28 chr13 66320419 66320595 -53424303 - L1MEc LINE L1 -3647 2568 2398 3914 220 21 21 chr13 66320611 66324521 -53420377 - L1PB4 LINE L1 -3 7591 3487 703 310 57 63 chr13 66324553 66325079 -53419819 - L1PB4 LINE L1 -6421 1164 11 1263 282 101 42 chr13 66325095 66326608 -53418290 - L1MEc LINE L1 -3965 2431 829 33 0 0 0 chr13 66326741 66326774 -53418124 + AT_rich Low_complexity Low_complexity 1 33 0 336 270 157 22 chr13 66327152 66327337 -53417561 - L1MEc LINE L1 -5859 346 137 25 31 0 0 chr13 66327631 66327663 -53417235 + AT_rich Low_complexity Low_complexity 1 32 0 219 263 0 0 chr13 66328840 66328897 -53416001 + T-rich Low_complexity Low_complexity 1 57 0 2146 108 0 3 chr13 66329719 66330015 -53414883 - AluSg SINE Alu -15 295 1 30 93 0 0 chr13 66330156 66330242 -53414656 + AT_rich Low_complexity Low_complexity 1 86 0 253 368 63 0 chr13 66330279 66330374 -53414524 + L2 LINE L2 2897 2997 -316 1790 229 11 42 chr13 66330711 66331188 -53413710 + MLT1D LTR MaLR 42 503 -2 615 263 108 80 chr13 66331298 66331825 -53413073 - L1ME LINE L1 -351 5811 5268 326 261 171 25 chr13 66331837 66332036 -53412862 - L1ME LINE L1 -913 5233 5006 733 245 68 32 chr13 66332086 66332335 -53412563 - L1MA4 LINE L1 -6 6294 6037 406 269 178 11 chr13 66332503 66332767 -53412131 - L1ME LINE L1 -1346 4800 4493 354 284 81 56 chr13 66333196 66333481 -53411417 + MLT1I LTR MaLR 116 407 -2 576 113 0 0 chr13 66333942 66334022 -53410876 + MADE1 DNA Mariner 1 80 0 852 210 54 73 chr13 66335695 66336009 -53408889 - L1PB4 LINE L1 -987 5159 4852 4854 182 14 1 chr13 66336012 66336993 -53407905 + L1PB4 LINE L1 5162 6155 -1 1348 237 63 19 chr13 66338667 66339030 -53405868 + MLT1B LTR MaLR 1 379 -11 2045 105 27 17 chr13 66339531 66339827 -53405071 - AluSx SINE Alu -12 300 2 967 272 87 54 chr13 66340056 66340596 -53404302 - MLT2E LTR ERVL -2 626 6 4512 180 76 10 chr13 66341110 66341443 -53403455 - L1MA4 LINE L1 -23 6277 5968 267 54 0 0 chr13 66341443 66341480 -53403418 + (TG)n Simple_repeat Simple_repeat 2 38 0 4512 180 76 10 chr13 66341480 66342237 -53402661 - L1MA4 LINE L1 -332 5968 5101 1403 143 45 22 chr13 66344413 66344636 -53400262 + THE1B LTR MaLR 125 352 -12 11471 100 4 2 chr13 66344638 66346215 -53398683 + THE1B-int LTR MaLR 1 1580 0 2195 138 39 14 chr13 66346215 66346570 -53398328 + THE1B LTR MaLR 1 364 0 537 304 98 10 chr13 66346983 66347177 -53397721 + MIR SINE MIR 36 246 -16 306 250 45 9 chr13 66348203 66348315 -53396583 - L1ME4a LINE L1 -241 5880 5765 1654 175 3 18 chr13 66348322 66348632 -53396266 - AluJo SINE Alu 0 306 1 22 0 0 0 chr13 66348692 66348714 -53396184 + AT_rich Low_complexity Low_complexity 1 22 0 230 214 86 0 chr13 66348886 66348956 -53395942 - L1ME4a LINE L1 -681 5440 5365 694 303 73 38 chr13 66349739 66350082 -53394816 - L2 LINE L2 -18 3295 2941 306 273 27 9 chr13 66350391 66350501 -53394397 - HAL1 LINE L1 -111 2396 2285 408 256 64 30 chr13 66350508 66350711 -53394187 - HAL1 LINE L1 -262 2245 2036 343 182 15 15 chr13 66350738 66350804 -53394094 + Tigger5 DNA MER2_type 13 78 -2245 430 203 0 13 chr13 66350805 66350884 -53394014 - Tigger5 DNA MER2_type -4 2319 2242 354 191 59 0 chr13 66350879 66350947 -53393951 + Tigger5 DNA MER2_type 2247 2318 -5 * 200 182 45 0 chr13 66351055 66351099 -53393799 + T-rich Low_complexity Low_complexity 5 50 0 1502 293 70 37 chr13 66351222 66351440 -53393458 - HAL1 LINE L1 -593 1914 1705 1365 250 43 3 chr13 66351440 66351768 -53393130 + MER58B DNA MER1_type 1 341 0 1502 293 70 37 chr13 66351768 66352332 -53392566 - HAL1 LINE L1 -802 1705 1106 230 132 44 15 chr13 66352430 66352498 -53392400 + (TA)n Simple_repeat Simple_repeat 2 71 0 843 275 53 103 chr13 66352753 66353259 -53391639 - MLT1F1 LTR MaLR -34 533 59 1501 120 143 8 chr13 66353259 66353518 -53391380 + AluSq SINE Alu 1 294 -9 843 275 53 103 chr13 66353518 66353571 -53391327 - MLT1F1 LTR MaLR -508 59 5 22 70 0 0 chr13 66353871 66353914 -53390984 + AT_rich Low_complexity Low_complexity 1 43 0 298 227 36 9 chr13 66354480 66354590 -53390308 + (TA)n Simple_repeat Simple_repeat 1 113 0 * 307 240 41 12 chr13 66354565 66354736 -53390162 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 * 350 202 45 34 chr13 66354701 66354879 -53390019 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 308 262 24 12 chr13 66354878 66355042 -53389856 + (TATAA)n Simple_repeat Simple_repeat 5 170 0 * 50 14 0 28 chr13 66355042 66355065 -53389833 + AT_rich Low_complexity Low_complexity 1 23 -47 1986 149 0 0 chr13 66355065 66355354 -53389544 - AluSx SINE Alu -23 289 1 50 14 0 28 chr13 66355354 66355402 -53389496 + AT_rich Low_complexity Low_complexity 23 70 0 275 229 11 11 chr13 66355402 66355682 -53389216 + (TA)n Simple_repeat Simple_repeat 1 280 0 1565 181 122 20 chr13 66355683 66356189 -53388709 - MLT2A2 LTR ERVL 0 554 1 244 294 8 17 chr13 66356189 66356308 -53388590 + (TA)n Simple_repeat Simple_repeat 2 119 0 27 49 0 0 chr13 66356652 66356693 -53388205 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 66357581 66357606 -53387292 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 66358070 66358093 -53386805 + AT_rich Low_complexity Low_complexity 1 23 0 229 338 79 44 chr13 66358875 66359103 -53385795 + MIR SINE MIR 27 262 0 2313 172 64 9 chr13 66359435 66359872 -53385026 + LOR1b LTR ERV1 1 461 0 2094 163 24 21 chr13 66359963 66360344 -53384554 - LTR8 LTR ERV1 0 691 310 1094 174 0 15 chr13 66360391 66360587 -53384311 - LTR8 LTR ERV1 -382 309 117 7577 27 0 0 chr13 66360605 66361553 -53383345 - L1PA4 LINE L1 -3 6152 5205 6996 20 0 1 chr13 66361553 66362386 -53382512 + L1PA4 LINE L1 4375 5206 -940 615 226 22 0 chr13 66362386 66362523 -53382375 - LTR8A LTR ERV1 -587 140 1 28 0 0 0 chr13 66363079 66363107 -53381791 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr13 66363131 66363166 -53381732 + AT_rich Low_complexity Low_complexity 1 35 0 203 204 19 0 chr13 66364222 66364276 -53380622 + (TA)n Simple_repeat Simple_repeat 2 56 0 691 225 0 0 chr13 66364372 66364501 -53380397 + MER94 DNA DNA 6 134 0 183 325 0 100 chr13 66365633 66365753 -53379145 + L2 LINE L2 3159 3266 -47 22 0 0 0 chr13 66365779 66365801 -53379097 + AT_rich Low_complexity Low_complexity 1 22 0 208 156 0 78 chr13 66367751 66367815 -53377083 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 23 0 0 0 chr13 66367868 66367891 -53377007 + AT_rich Low_complexity Low_complexity 1 23 0 204 158 0 0 chr13 66367891 66367906 -53376992 + (TA)n Simple_repeat Simple_repeat 2 39 0 312 295 26 0 chr13 66367940 66368096 -53376802 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr13 66368120 66368142 -53376756 + AT_rich Low_complexity Low_complexity 1 22 0 409 314 25 38 chr13 66368994 66369153 -53375745 + MIR SINE MIR 1 157 -105 2786 299 71 16 chr13 66369296 66370263 -53374635 + L1MDa LINE L1 19 1038 -5502 295 186 14 0 chr13 66370262 66370332 -53374566 + L1MB3 LINE L1 6085 6155 -28 * 353 219 34 0 chr13 66370332 66370451 -53374447 + (TA)n Simple_repeat Simple_repeat 1 123 0 180 111 0 0 chr13 66370499 66370526 -53374372 + (TA)n Simple_repeat Simple_repeat 2 28 0 2922 220 137 22 chr13 66370658 66371777 -53373121 + L1MDa LINE L1 1025 2271 -4269 299 323 20 0 chr13 66372139 66372238 -53372660 + ERVL LTR ERVL 3644 3744 -2020 2239 113 3 0 chr13 66372241 66372551 -53372347 - AluSq SINE Alu 0 313 3 828 100 0 0 chr13 66372761 66372871 -53372027 - AluJb SINE Alu -179 133 24 378 138 35 0 chr13 66372924 66372982 -53371916 + AluJ/FLAM SINE Alu 14 73 -229 488 301 146 48 chr13 66372989 66373401 -53371497 + ERVL LTR ERVL 4010 4461 -1303 399 181 147 35 chr13 66375182 66375298 -53369600 + MER5B DNA MER1_type 15 143 -35 324 0 0 0 chr13 66375342 66375378 -53369520 + (CA)n Simple_repeat Simple_repeat 2 37 0 863 331 82 59 chr13 66375712 66376800 -53368098 + ERVL LTR ERVL 1622 2734 -3030 4873 134 67 51 chr13 66376803 66378106 -53366792 + pTR5 LTR ERV1 742 2355 -83 2019 94 38 7 chr13 66378106 66378394 -53366504 - AluY SINE Alu -14 297 1 4873 134 67 51 chr13 66378394 66378480 -53366418 + pTR5 LTR ERV1 2355 2438 0 261 329 116 42 chr13 66378611 66378921 -53365977 + ERVL LTR ERVL 2891 3223 -2541 284 351 43 22 chr13 66379082 66379267 -53365631 + ERVL LTR ERVL 4361 4549 -1215 2262 90 0 20 chr13 66379557 66379856 -53365042 - AluY SINE Alu -17 294 2 2691 141 95 8 chr13 66379902 66380385 -53364513 - L1PA16 LINE L1 -7 6159 5635 5049 186 36 11 chr13 66380565 66382100 -53362798 + L1MA8 LINE L1 4725 6288 -3 355 278 35 9 chr13 66383386 66383501 -53361397 - MLT1J1 LTR MaLR -327 119 2 232 233 178 14 chr13 66384047 66384120 -53360778 + MIR SINE MIR 168 252 -10 28 48 0 0 chr13 66384583 66384625 -53360273 + AT_rich Low_complexity Low_complexity 1 42 0 4542 314 111 39 chr13 66386269 66387574 -53357324 + L2 LINE L2 36 1246 -2067 249 33 0 0 chr13 66387574 66387604 -53357294 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4542 314 111 39 chr13 66387604 66387837 -53357061 + L2 LINE L2 1246 1461 -1852 2237 68 21 4 chr13 66387837 66388117 -53356781 + AluY SINE Alu 1 285 -26 4542 314 111 39 chr13 66388117 66389148 -53355750 + L2 LINE L2 1461 2870 -443 351 0 0 0 chr13 66389148 66389187 -53355711 + (TA)n Simple_repeat Simple_repeat 2 40 0 4542 314 111 39 chr13 66389187 66389665 -53355233 + L2 LINE L2 2870 3312 -1 3066 159 25 0 chr13 66389957 66390485 -53354413 + Tigger1 DNA MER2_type 185 725 -1693 4654 23 2 2 chr13 66390497 66391067 -53353831 - L1PA3 LINE L1 -2928 3218 2649 17879 30 1 0 chr13 66391067 66394007 -53350891 + L1PA3 LINE L1 3226 6169 0 9284 148 26 37 chr13 66394021 66394492 -53350406 + Tigger1 DNA MER2_type 727 1202 -1216 1946 162 0 0 chr13 66394492 66394794 -53350104 - AluSq SINE Alu -11 302 1 9284 148 26 37 chr13 66394794 66396034 -53348864 + Tigger1 DNA MER2_type 1202 2418 0 646 216 7 0 chr13 66396070 66396218 -53348680 - L1M4 LINE L1 -1200 4946 4798 940 297 16 16 chr13 66396222 66396657 -53348241 - L1M4 LINE L1 -2515 3631 3197 450 218 78 53 chr13 66396670 66396913 -53347985 - L1MCa LINE L1 -5016 1548 1300 * 821 274 60 27 chr13 66396909 66397207 -53347691 - L1MCa LINE L1 -5197 894 572 1215 268 140 54 chr13 66397275 66397821 -53347077 - L1MCa LINE L1 -5484 561 56 234 324 159 6 chr13 66398293 66398463 -53346435 + MIR SINE MIR 67 262 0 218 317 24 37 chr13 66399974 66400056 -53344842 + MIR SINE MIR 51 131 -131 267 315 60 27 chr13 66400238 66400387 -53344511 + MIR SINE MIR 36 189 -73 262 385 50 0 chr13 66401403 66401564 -53343334 + L2 LINE L2 1261 1429 -1885 6457 25 0 1 chr13 66402263 66403017 -53341881 + L1PA3 LINE L1 5403 6155 0 414 353 32 11 chr13 66406000 66406190 -53338708 + MIR SINE MIR 43 236 -26 222 246 43 14 chr13 66406262 66406331 -53338567 - MIR SINE MIR -74 188 118 200 371 56 11 chr13 66406462 66406551 -53338347 + L2 LINE L2 3137 3229 -43 21 89 0 0 chr13 66407455 66407511 -53337387 + AT_rich Low_complexity Low_complexity 1 56 0 893 266 118 45 chr13 66407823 66408143 -53336755 + L1ME3A LINE L1 5520 5815 -355 1557 192 89 9 chr13 66408143 66408481 -53336417 - MLT1A1 LTR MaLR 0 365 1 893 266 118 45 chr13 66408481 66408755 -53336143 + L1ME3A LINE L1 5815 6158 -12 555 266 46 110 chr13 66408936 66409437 -53335461 - MLT1J LTR MaLR -1 510 42 29 0 0 0 chr13 66409644 66409673 -53335225 + AT_rich Low_complexity Low_complexity 1 29 0 214 386 94 0 chr13 66410053 66410180 -53334718 + L2 LINE L2 3134 3272 0 337 297 107 30 chr13 66410290 66410597 -53334301 + MLT1J2 LTR MaLR 94 386 -23 741 233 70 51 chr13 66410957 66411172 -53333726 - MER20 DNA MER1_type 0 219 1 33 25 0 0 chr13 66411906 66411946 -53332952 + AT_rich Low_complexity Low_complexity 1 40 0 203 235 39 0 chr13 66412572 66412623 -53332275 + L2 LINE L2 3256 3308 -5 2010 135 39 33 chr13 66414530 66414892 -53330006 - THE1B LTR MaLR 0 364 1 11207 113 1 1 chr13 66414892 66416470 -53328428 - THE1B-int LTR MaLR 0 1580 2 1517 147 52 130 chr13 66416471 66416878 -53328020 - THE1C LTR MaLR 0 375 1 229 346 12 0 chr13 66417298 66417379 -53327519 - L2 LINE L2 0 3313 3232 261 0 0 0 chr13 66418292 66418321 -53326577 + (TTG)n Simple_repeat Simple_repeat 2 30 0 255 333 122 8 chr13 66418859 66418982 -53325916 + MIR SINE MIR 11 147 -115 25 75 0 0 chr13 66419394 66419447 -53325451 + AT_rich Low_complexity Low_complexity 1 53 0 245 87 0 22 chr13 66419462 66419508 -53325390 + (TA)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr13 66420864 66420884 -53324014 + (T)n Simple_repeat Simple_repeat 1 20 0 496 192 0 115 chr13 66422273 66422403 -53322495 - L2 LINE L2 -6 3307 3193 32 57 0 0 chr13 66422413 66422466 -53322432 + AT_rich Low_complexity Low_complexity 1 53 0 4552 138 11 15 chr13 66422473 66423226 -53321672 + L1PA15 LINE L1 5413 6162 -3 550 319 112 28 chr13 66423552 66424317 -53320581 - HAL1 LINE L1 -800 1707 878 230 194 28 28 chr13 66425231 66425303 -53319595 + (TA)n Simple_repeat Simple_repeat 1 72 0 1793 113 0 33 chr13 66425839 66426113 -53318785 + AluSq SINE Alu 1 265 -48 519 263 32 0 chr13 66426405 66426591 -53318307 + L1ME LINE L1 5258 5449 -715 * 6034 113 2 0 chr13 66426589 66427463 -53317435 - L1P LINE L1 -1378 4768 3893 1394 143 0 0 chr13 66427460 66427690 -53317208 - L1P LINE L1 -1705 4441 4212 * 2632 178 22 20 chr13 66427758 66428259 -53316639 - MER67C LTR ERV1 -208 502 1 5452 196 48 11 chr13 66428451 66429642 -53315256 - L1 LINE L1 -911 5235 3995 3529 112 84 17 chr13 66429642 66430216 -53314682 - LTR9 LTR ERV1 0 612 1 5452 196 48 11 chr13 66430216 66430262 -53314636 - L1 LINE L1 -2151 3995 3952 4229 195 6 7 chr13 66430260 66431210 -53313688 + L1MA9 LINE L1 5254 6298 -14 * 2178 112 0 3 chr13 66431302 66431597 -53313301 - AluSg SINE Alu -16 294 1 332 319 28 7 chr13 66431851 66431995 -53312903 + MER69 DNA AcHobo 1 147 -2379 21 89 0 0 chr13 66432863 66432919 -53311979 + AT_rich Low_complexity Low_complexity 1 56 0 274 291 82 27 chr13 66434022 66434242 -53310656 + L1M4 LINE L1 4600 4831 -1315 251 290 52 26 chr13 66434310 66434579 -53310319 + L1M4 LINE L1 5047 5322 -824 547 287 104 12 chr13 66434587 66434838 -53310060 - L1ME3A LINE L1 -285 5885 5612 480 234 170 32 chr13 66434937 66435163 -53309735 - MER31B LTR ERV1 -244 241 15 246 290 96 52 chr13 66435173 66435497 -53309401 - L1ME3A LINE L1 -579 5591 5254 495 137 14 0 chr13 66435543 66435616 -53309282 - MER2 DNA MER2_type -270 75 2 21 71 0 0 chr13 66436193 66436235 -53308663 + AT_rich Low_complexity Low_complexity 1 42 0 581 308 181 23 chr13 66438444 66438876 -53306022 - L2 LINE L2 -5 3308 2809 345 299 45 140 chr13 66438988 66439201 -53305697 - L2 LINE L2 -512 2802 2570 2089 127 3 0 chr13 66439201 66439509 -53305389 + AluSg SINE Alu 1 309 -1 345 299 45 140 chr13 66439509 66439842 -53305056 - L2 LINE L2 -744 2570 2310 3443 118 31 6 chr13 66439842 66440168 -53304730 + MER41C LTR ERV1 1 348 -206 189 0 0 0 chr13 66440168 66440189 -53304709 + (TA)n Simple_repeat Simple_repeat 1 21 0 3443 118 31 6 chr13 66440189 66440402 -53304496 + MER41C LTR ERV1 348 554 0 345 299 45 140 chr13 66440402 66440425 -53304473 - L2 LINE L2 -1004 2310 2286 3837 88 24 0 chr13 66441512 66442047 -53302851 - MER41A LTR ERV1 -6 548 1 48 43 0 0 chr13 66443091 66443160 -53301738 + AT_rich Low_complexity Low_complexity 1 69 0 713 239 197 58 chr13 66443997 66444256 -53300642 + MLT2B1 LTR ERVL 170 464 -56 266 247 13 13 chr13 66444290 66444367 -53300531 - HERVL LTR ERVL -5553 101 25 11745 198 16 15 chr13 66444367 66447050 -53297848 + ERVL LTR ERVL 813 3551 -2213 4268 184 11 15 chr13 66447058 66447846 -53297052 + ERVL LTR ERVL 3779 4563 -1201 237 83 0 0 chr13 66447921 66447957 -53296941 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 21 82 0 0 chr13 66448108 66448157 -53296741 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 66448185 66448206 -53296692 + AT_rich Low_complexity Low_complexity 1 21 0 291 239 90 50 chr13 66448486 66448687 -53296211 - L1ME LINE L1 -698 5466 5258 281 207 83 1 chr13 66448767 66448849 -53296049 - L1ME2 LINE L1 -8 6326 6077 433 207 0 2 chr13 66449251 66449351 -53295547 - L1MA6 LINE L1 -6 6294 6188 786 330 95 35 chr13 66449352 66450191 -53294707 - L1ME LINE L1 -1153 4993 4104 200 150 0 67 chr13 66450434 66450494 -53294404 + (TTTTA)n Simple_repeat Simple_repeat 5 60 0 205 300 43 29 chr13 66450526 66450596 -53294302 + L2 LINE L2 3187 3257 -15 22 0 0 0 chr13 66450901 66450923 -53293975 + AT_rich Low_complexity Low_complexity 1 22 0 2392 21 42 7 chr13 66453650 66453939 -53290959 + AluY SINE Alu 1 299 -12 367 370 58 7 chr13 66454392 66454546 -53290352 + MER91A DNA MER1_type 1 162 -34 29 0 0 0 chr13 66455470 66455499 -53289399 + AT_rich Low_complexity Low_complexity 1 29 0 569 286 89 5 chr13 66455661 66455874 -53289024 + MIR SINE MIR 31 261 -1 21 71 0 0 chr13 66458177 66458219 -53286679 + AT_rich Low_complexity Low_complexity 1 42 0 309 258 55 8 chr13 66458294 66458422 -53286476 + L1MDa LINE L1 1554 1687 -4853 230 228 239 0 chr13 66458662 66458754 -53286144 + L1MDa LINE L1 3044 3157 -3383 24 32 0 0 chr13 66458903 66458934 -53285964 + AT_rich Low_complexity Low_complexity 1 31 0 426 296 55 20 chr13 66458983 66459182 -53285716 + MER58C DNA MER1_type 1 206 -9 611 279 54 8 chr13 66459193 66459526 -53285372 + L1MDa LINE L1 3408 3754 -2786 363 287 17 0 chr13 66459601 66459716 -53285182 + L1MDa LINE L1 4108 4224 -2316 1979 202 141 91 chr13 66459726 66460564 -53284334 + LTR28 LTR ERV1 1 1020 0 243 181 58 63 chr13 66460847 66460952 -53283946 + L1MDa LINE L1 4492 4589 -1951 28 61 0 0 chr13 66461018 66461067 -53283831 + AT_rich Low_complexity Low_complexity 1 49 0 1286 124 52 4 chr13 66461175 66461408 -53283490 + L1MA2 LINE L1 6061 6304 0 1969 149 0 13 chr13 66462116 66462425 -53282473 + AluSx SINE Alu 1 305 -7 1176 221 129 28 chr13 66462502 66462827 -53282071 + MLT1D LTR MaLR 148 505 0 692 228 60 64 chr13 66462827 66462934 -53281964 + MLT1D-int LTR MaLR 1 107 -1264 2472 77 3 0 chr13 66462934 66463244 -53281654 - AluY SINE Alu 0 311 1 692 228 60 64 chr13 66463244 66463434 -53281464 + MLT1D-int LTR MaLR 107 297 -1074 1731 224 17 132 chr13 66463491 66464180 -53280718 + MLT1D-int LTR MaLR 278 887 -484 405 0 0 0 chr13 66464547 66464592 -53280306 + (TA)n Simple_repeat Simple_repeat 1 45 0 368 316 112 53 chr13 66464705 66465294 -53279604 + L1MC/D LINE L1 3249 3872 -2274 232 317 59 27 chr13 66465735 66465921 -53278977 + L1MC/D LINE L1 5625 5816 -1992 191 189 19 0 chr13 66466211 66466264 -53278634 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 338 274 118 22 chr13 66466707 66466842 -53278056 - L2 LINE L2 -6 3307 3160 1622 148 26 33 chr13 66467419 66467722 -53277176 + AluSx SINE Alu 1 301 -11 263 328 28 90 chr13 66467724 66467901 -53276997 - L3 LINE CR1 -28 1549 1384 32 26 0 0 chr13 66468527 66468566 -53276332 + AT_rich Low_complexity Low_complexity 1 39 0 201 329 14 0 chr13 66468745 66468815 -53276083 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 2588 46 0 3 chr13 66469373 66469680 -53275218 - AluY SINE Alu -5 306 1 24 85 0 0 chr13 66470191 66470250 -53274648 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr13 66472824 66472854 -53272044 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 66472988 66473016 -53271882 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 66473481 66473504 -53271394 + AT_rich Low_complexity Low_complexity 1 23 0 4963 171 25 15 chr13 66474757 66476159 -53268739 - L1PA16 LINE L1 -5 6161 4748 3918 174 149 47 chr13 66476444 66477369 -53267529 + LTR28 LTR ERV1 1 1020 0 270 298 124 45 chr13 66477876 66478054 -53266844 - L2 LINE L2 -3 3310 3119 2138 104 0 3 chr13 66478125 66478414 -53266484 - AluSx SINE Alu -24 288 1 376 304 188 18 chr13 66478479 66478755 -53266143 - L2 LINE L2 -523 2791 2469 183 262 0 0 chr13 66479547 66479589 -53265309 + L2 LINE L2 3270 3311 -2 2031 110 23 3 chr13 66479789 66480089 -53264809 - AluSp SINE Alu -7 306 1 393 271 10 0 chr13 66481980 66482076 -53262822 + MER5A DNA MER1_type 14 110 -79 23 33 0 0 chr13 66483604 66483634 -53261264 + AT_rich Low_complexity Low_complexity 1 30 0 246 337 122 0 chr13 66483683 66483781 -53261117 + L2 LINE L2 3204 3313 0 21 0 0 0 chr13 66484387 66484408 -53260490 + AT_rich Low_complexity Low_complexity 1 21 0 723 200 50 82 chr13 66485857 66486077 -53258821 - MER89 LTR ERV1 -4 555 343 303 319 78 47 chr13 66486196 66486428 -53258470 - L1MDa LINE L1 -3934 2281 2043 382 317 72 32 chr13 66486473 66486722 -53258176 - L1MDa LINE L1 -4375 2021 1763 244 326 41 0 chr13 66486752 66486850 -53258048 + MER91C DNA MER1_type 33 134 -6 21 0 0 0 chr13 66488225 66488246 -53256652 + AT_rich Low_complexity Low_complexity 1 21 0 621 156 90 0 chr13 66488318 66488400 -53256498 + L1M1 LINE L1 12 110 -7455 399 41 0 0 chr13 66488400 66488449 -53256449 + (CA)n Simple_repeat Simple_repeat 2 50 0 621 156 90 0 chr13 66488449 66488488 -53256410 + L1M1 LINE L1 110 144 -7421 229 186 0 0 chr13 66488474 66488517 -53256381 + L1M1 LINE L1 1099 1141 -6424 * 3829 221 4 7 chr13 66488518 66489264 -53255634 + L1M1 LINE L1 331 1074 -6491 213 65 0 0 chr13 66489403 66489434 -53255464 + (A)n Simple_repeat Simple_repeat 1 31 0 34 24 0 0 chr13 66489895 66489936 -53254962 + AT_rich Low_complexity Low_complexity 1 41 0 194 184 26 0 chr13 66491477 66491515 -53253383 + L2 LINE L2 3261 3299 -14 1630 96 34 0 chr13 66491912 66492151 -53252747 + L1PA7 LINE L1 5907 6153 -1 252 147 53 21 chr13 66493126 66493221 -53251677 + (TAA)n Simple_repeat Simple_repeat 2 99 0 735 318 41 46 chr13 66493972 66494340 -53250558 + LTR16A LTR ERVL 79 444 -6 243 239 0 0 chr13 66494458 66494504 -53250394 + Alu SINE Alu 79 124 -178 22 35 0 0 chr13 66494662 66494691 -53250207 + AT_rich Low_complexity Low_complexity 1 29 0 522 216 10 0 chr13 66494743 66494842 -53250056 + Tigger1 DNA MER2_type 1 100 -2318 558 186 0 0 chr13 66494842 66494944 -53249954 + LTR60 LTR ERV1 1 102 -484 1351 177 17 34 chr13 66494947 66495110 -53249788 + LTR60 LTR ERV1 296 453 -133 1136 158 148 141 chr13 66495110 66495264 -53249634 + MSTA LTR MaLR 1 152 -276 1931 157 3 0 chr13 66495264 66495569 -53249329 - AluSx SINE Alu -4 308 3 1136 158 148 141 chr13 66495569 66495839 -53249059 + MSTA LTR MaLR 152 428 0 1351 177 17 34 chr13 66495839 66495969 -53248929 + LTR60 LTR ERV1 453 584 -2 4262 177 62 7 chr13 66496196 66496861 -53248037 + Tigger1 DNA MER2_type 101 825 -1593 180 0 0 0 chr13 66496861 66496881 -53248017 + (TA)n Simple_repeat Simple_repeat 2 21 0 4262 177 62 7 chr13 66496881 66497064 -53247834 + Tigger1 DNA MER2_type 825 996 -1422 3962 216 77 8 chr13 66497072 66498180 -53246718 - L1 LINE L1 -2367 3779 2596 22 0 0 0 chr13 66498663 66498685 -53246213 + AT_rich Low_complexity Low_complexity 1 22 0 834 249 78 55 chr13 66499116 66499682 -53245216 - L1MC5 LINE L1 -46 7915 7337 2753 193 4 33 chr13 66499735 66500284 -53244614 - MER52A LTR ERV1 0 1755 1223 2424 208 165 45 chr13 66500283 66501156 -53243742 - MER52A LTR ERV1 -692 1063 1 * 665 257 6 19 chr13 66501158 66501333 -53243565 + MER58B DNA MER1_type 45 334 -7 963 237 108 38 chr13 66501531 66501985 -53242913 + MER66A LTR ERV1 98 478 0 241 217 116 0 chr13 66502324 66502393 -53242505 + HsTC2 DNA Tc2 1 77 -1821 448 291 95 16 chr13 66502976 66503165 -53241733 - MIR SINE MIR 0 262 59 673 318 90 29 chr13 66503433 66503776 -53241122 + MLT1I LTR MaLR 35 398 -11 495 175 21 0 chr13 66504229 66504326 -53240572 - MER89 LTR ERV1 -460 99 1 316 353 134 35 chr13 66505453 66505886 -53239012 + L3 LINE CR1 1079 1554 -23 22 35 0 0 chr13 66507635 66507664 -53237234 + AT_rich Low_complexity Low_complexity 1 29 0 321 328 129 5 chr13 66508058 66508244 -53236654 - MIR SINE MIR -2 260 52 3906 198 49 32 chr13 66508458 66509971 -53234927 - L1MB4 LINE L1 -4 6176 4650 1102 231 136 39 chr13 66510010 66510296 -53234602 + MLT1E LTR MaLR 207 520 -73 562 212 104 10 chr13 66510301 66510325 -53234573 - L1MB4 LINE L1 -1439 4707 4687 2272 92 3 13 chr13 66510325 66510639 -53234259 - AluY SINE Alu 0 311 1 562 212 104 10 chr13 66510639 66510807 -53234091 - L1MB4 LINE L1 -1459 4687 4497 204 219 0 0 chr13 66510829 66510870 -53234028 + (CATA)n Simple_repeat Simple_repeat 3 43 0 1641 196 0 3 chr13 66510991 66511328 -53233570 + AluJo SINE Alu 1 336 0 458 312 35 64 chr13 66511403 66511749 -53233149 + HAL1 LINE L1 24 359 -2148 225 226 0 0 chr13 66512144 66512197 -53232701 + (TA)n Simple_repeat Simple_repeat 1 53 0 1067 281 42 31 chr13 66512227 66512799 -53232099 + HAL1 LINE L1 1088 1665 -842 233 250 0 0 chr13 66513792 66513840 -53231058 + Tigger7 DNA MER2_type 1 48 -657 384 145 121 0 chr13 66513843 66513925 -53230973 + Tigger7 DNA MER2_type 2242 2333 -158 2693 202 39 54 chr13 66513925 66514669 -53230229 - MER4D LTR ERV1 0 903 62 4693 67 29 6 chr13 66514672 66515679 -53229219 - MER11A LTR ERVK -1 1265 1 1188 178 119 8 chr13 66515679 66515932 -53228966 - MER49 LTR ERV1 -642 281 1 927 189 0 0 chr13 66515932 66516091 -53228807 + Tigger7 DNA MER2_type 2330 2488 -3 252 0 0 0 chr13 66516091 66516119 -53228779 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 385 62 31 0 chr13 66516118 66516183 -53228715 + (TA)n Simple_repeat Simple_repeat 2 68 0 390 57 0 0 chr13 66516235 66516288 -53228610 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 346 311 39 66 chr13 66516548 66516805 -53228093 - HAL1 LINE L1 -1248 1259 1010 28 29 0 0 chr13 66516832 66516867 -53228031 + AT_rich Low_complexity Low_complexity 1 35 0 221 355 0 0 chr13 66517441 66517503 -53227395 - MIR SINE MIR -196 66 5 209 33 33 0 chr13 66517745 66517775 -53227123 + (TTA)n Simple_repeat Simple_repeat 1 31 0 613 219 73 26 chr13 66517783 66517934 -53226964 - FRAM SINE Alu -26 150 1 4027 108 44 2 chr13 66518015 66518633 -53226265 + LTR9B LTR ERV1 1 644 0 21 57 0 0 chr13 66519855 66519890 -53225008 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr13 66520709 66520753 -53224145 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr13 66520928 66520957 -53223941 + AT_rich Low_complexity Low_complexity 1 29 0 1409 333 67 57 chr13 66521147 66521280 -53223618 + HERV16 LTR ERVL 326 456 -4540 2139 161 14 0 chr13 66521280 66521641 -53223257 + MER47A DNA MER2_type 1 366 0 1409 333 67 57 chr13 66521641 66522710 -53222188 + HERV16 LTR ERVL 456 1541 -3455 1737 221 20 0 chr13 66522743 66523101 -53221797 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr13 66523108 66523129 -53221769 + AT_rich Low_complexity Low_complexity 1 21 0 549 298 10 54 chr13 66523204 66523409 -53221489 + HERV16 LTR ERVL 1782 1977 -3019 28 0 0 0 chr13 66575998 66576026 -53168872 + AT_rich Low_complexity Low_complexity 1 28 0 1831 206 59 22 chr13 66576445 66576902 -53167996 + L1MC3 LINE L1 7131 7604 -181 728 186 16 33 chr13 66577054 66577237 -53167661 + L1MC3 LINE L1 7598 7777 -8 1238 262 35 0 chr13 66578146 66578436 -53166462 - MLT1E LTR MaLR -5 588 289 2045 131 7 0 chr13 66582092 66582383 -53162515 - AluSx SINE Alu -16 296 4 1839 158 14 3 chr13 66582617 66582914 -53161984 - AluSx SINE Alu -8 304 5 2691 86 58 21 chr13 66583026 66583458 -53161440 - LTR7 LTR ERV1 -2 448 1 2627 60 45 13 chr13 66583458 66583838 -53161060 - HERVH LTR ERV1 0 7713 7322 1344 140 18 14 chr13 66583836 66584058 -53160840 - HERVH LTR ERV1 -1894 5819 5597 * 4344 141 3 1 chr13 66584055 66584716 -53160182 - HERVH LTR ERV1 -2564 5149 4488 3354 111 2 4 chr13 66584718 66585213 -53159685 - HERVH LTR ERV1 -3720 3993 3500 912 140 7 0 chr13 66585212 66585362 -53159536 - HERVH LTR ERV1 -4423 3290 3140 * 19953 92 27 15 chr13 66585341 66588299 -53156599 - HERVH LTR ERV1 -4718 2995 1 2634 79 63 21 chr13 66588301 66588731 -53156167 - LTR7 LTR ERV1 -2 448 1 347 361 84 29 chr13 66589689 66589927 -53154971 - MIR SINE MIR 0 262 12 766 270 38 0 chr13 66590420 66590631 -53154267 + MER20 DNA MER1_type 1 219 0 309 347 116 31 chr13 66591740 66591965 -53152933 - MIR SINE MIR -13 249 6 2243 119 0 0 chr13 66591965 66592267 -53152631 + AluSx SINE Alu 1 302 -10 256 336 66 22 chr13 66592478 66592615 -53152283 - L2 LINE L2 -845 2469 2327 369 365 77 18 chr13 66592739 66592961 -53151937 + MLT1K LTR MaLR 142 376 -212 187 327 115 35 chr13 66595168 66595281 -53149617 - L2 LINE L2 0 3313 3192 234 224 0 17 chr13 66596682 66596740 -53148158 - LTR33A LTR ERVL -23 500 444 1788 189 3 0 chr13 66598899 66599206 -53145692 + AluJb SINE Alu 1 308 -4 1022 281 187 22 chr13 66600010 66600685 -53144213 + LTR50 LTR ERVL 10 795 0 477 366 71 16 chr13 66600820 66601254 -53143644 + L1M4 LINE L1 3802 4259 -1887 1560 183 148 6 chr13 66601626 66601943 -53142955 + MSTB LTR MaLR 1 362 -64 1181 232 86 11 chr13 66601943 66602223 -53142675 - AluJo SINE Alu -10 302 2 489 100 0 0 chr13 66602223 66602293 -53142605 + MSTB LTR MaLR 357 426 0 321 271 10 10 chr13 66602619 66602715 -53142183 - MLT1I LTR MaLR -6 403 308 288 227 45 0 chr13 66602829 66602895 -53142003 - MLT1I LTR MaLR -244 165 97 725 200 21 0 chr13 66602913 66603083 -53141815 - AluSg/x SINE Alu 0 306 134 384 283 29 21 chr13 66603790 66603930 -53140968 - MLT1I LTR MaLR -7 421 308 3522 109 77 94 chr13 66604094 66604861 -53140037 - LTR1 LTR ERV1 0 785 32 30 0 0 0 chr13 66604997 66605027 -53139871 + AT_rich Low_complexity Low_complexity 1 30 0 939 161 19 12 chr13 66607559 66607721 -53137177 - FRAM SINE Alu -13 163 1 1246 186 16 25 chr13 66607793 66608035 -53136863 - MLT1D LTR MaLR 0 505 266 28 29 0 0 chr13 66608114 66608149 -53136749 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr13 66608587 66608621 -53136277 + AT_rich Low_complexity Low_complexity 1 34 0 1215 225 13 23 chr13 66608666 66608968 -53135930 - AluJo SINE Alu -2 300 2 206 174 22 0 chr13 66609016 66609062 -53135836 + (TA)n Simple_repeat Simple_repeat 2 48 0 35 24 0 0 chr13 66609136 66609178 -53135720 + AT_rich Low_complexity Low_complexity 1 42 0 312 144 39 33 chr13 66609195 66609348 -53135550 + (TA)n Simple_repeat Simple_repeat 2 155 0 232 184 41 20 chr13 66610190 66610239 -53134659 - MER5A DNA MER1_type -25 164 115 * 314 352 42 14 chr13 66610196 66610338 -53134560 + MER5A DNA MER1_type 43 188 -1 264 298 124 12 chr13 66610587 66610748 -53134150 + L2 LINE L2 28 206 -3108 314 277 0 54 chr13 66610759 66610907 -53133991 + L2 LINE L2 3087 3226 -87 30 59 0 0 chr13 66611245 66611296 -53133602 + AT_rich Low_complexity Low_complexity 1 51 0 901 183 0 33 chr13 66611408 66611588 -53133310 - AluSg/x SINE Alu -3 306 133 212 356 22 22 chr13 66611718 66611853 -53133045 + L2 LINE L2 2685 2819 -495 202 370 74 15 chr13 66611961 66612096 -53132802 + L2 LINE L2 2918 3060 -212 22 0 0 0 chr13 66612346 66612368 -53132530 + AT_rich Low_complexity Low_complexity 1 22 0 206 167 0 24 chr13 66614168 66614210 -53130688 + T-rich Low_complexity Low_complexity 3 43 0 336 24 0 0 chr13 66614273 66614314 -53130584 + (TA)n Simple_repeat Simple_repeat 1 41 0 462 65 0 0 chr13 66614314 66614376 -53130522 + (GA)n Simple_repeat Simple_repeat 1 62 0 1388 235 101 2 chr13 66614379 66614885 -53130013 - MLT2F LTR ERVL -55 608 5 992 167 25 0 chr13 66615723 66615885 -53129013 + AluSg/x SINE Alu 135 300 -12 1642 137 4 0 chr13 66616011 66616245 -53128653 - AluSq SINE Alu -76 237 3 33 73 0 0 chr13 66617703 66617771 -53127127 + AT_rich Low_complexity Low_complexity 1 68 0 225 313 26 70 chr13 66620318 66620433 -53124465 + MIR SINE MIR 37 146 -62 1339 7 0 0 chr13 66620578 66620725 -53124173 - AluY SINE Alu -10 301 155 1360 221 104 30 chr13 66622290 66622692 -53122206 + MLT1C LTR MaLR 36 467 0 1539 27 0 11 chr13 66622940 66623126 -53121772 - L1PA3 LINE L1 -3 6152 5969 2000 138 7 0 chr13 66623846 66624135 -53120763 - AluSx SINE Alu -21 291 1 31 0 0 0 chr13 66624730 66624761 -53120137 + AT_rich Low_complexity Low_complexity 1 31 0 508 318 132 31 chr13 66624778 66625362 -53119536 - L2 LINE L2 -90 3223 2572 1993 182 44 32 chr13 66625362 66625901 -53118997 - MLT2A2 LTR ERVL -7 547 1 4449 121 2 0 chr13 66625901 66626539 -53118359 - HERVL-A2 LTR ERVL 0 5654 5016 2954 200 5 14 chr13 66626644 66627234 -53117664 - HERVL-A2 LTR ERVL -778 4876 4292 629 248 48 19 chr13 66629174 66629380 -53115518 + L1ME2 LINE L1 5909 6120 -44 1892 127 7 7 chr13 66629381 66629664 -53115234 + AluSx SINE Alu 1 283 -29 219 103 0 0 chr13 66629667 66629706 -53115192 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 201 302 0 0 chr13 66629835 66629878 -53115020 + L2 LINE L2 3168 3210 -62 22 35 0 0 chr13 66630276 66630305 -53114593 + AT_rich Low_complexity Low_complexity 1 29 0 1078 151 6 0 chr13 66630595 66630774 -53114124 + L1PB4 LINE L1 5869 6048 -108 597 290 9 2 chr13 66631473 66631701 -53113197 + AluJb SINE Alu 1 271 -41 746 97 9 0 chr13 66631712 66631825 -53113073 + (GAAAA)n Simple_repeat Simple_repeat 2 115 0 933 210 75 0 chr13 66631971 66632078 -53112820 + MER46A DNA MER2_type 7 105 -2626 2054 139 0 7 chr13 66632078 66632381 -53112517 + AluSx SINE Alu 1 301 -11 933 210 75 0 chr13 66632381 66632487 -53112411 + MER46A DNA MER2_type 105 236 0 806 181 48 27 chr13 66632994 66633182 -53111716 - L1PB4 LINE L1 -1 6155 5964 207 0 0 0 chr13 66633215 66633238 -53111660 + (TA)n Simple_repeat Simple_repeat 1 23 0 7137 185 29 86 chr13 66633489 66636720 -53108178 + L1PA15 LINE L1 3135 6165 0 23 33 0 0 chr13 66636874 66636904 -53107994 + AT_rich Low_complexity Low_complexity 1 30 0 590 298 66 10 chr13 66636936 66637134 -53107764 - MIR SINE MIR -48 214 6 243 61 0 0 chr13 66637979 66638012 -53106886 + (TC)n Simple_repeat Simple_repeat 1 33 0 229 351 128 33 chr13 66638502 66638713 -53106185 - MIR SINE MIR -12 250 20 300 53 0 0 chr13 66639504 66639542 -53105356 + (CA)n Simple_repeat Simple_repeat 2 39 0 206 182 0 36 chr13 66639818 66639873 -53105025 + T-rich Low_complexity Low_complexity 5 57 0 252 171 0 0 chr13 66640444 66640485 -53104413 - MLT1H LTR MaLR -15 534 494 1258 323 110 22 chr13 66641018 66641600 -53103298 - MER115 DNA AcHobo -5 688 56 1646 81 5 0 chr13 66641693 66641916 -53102982 + L1PA8 LINE L1 5949 6172 0 1156 22 0 0 chr13 66642575 66642712 -53102186 - L1PA4 LINE L1 -3 6152 6016 2078 117 50 34 chr13 66642901 66643259 -53101639 - THE1B LTR MaLR 0 364 1 825 265 6 0 chr13 66643735 66643901 -53100997 - MER5A DNA MER1_type 0 189 23 1499 304 13 57 chr13 66643952 66644482 -53100416 + MLT1E LTR MaLR 52 558 -35 29 60 0 0 chr13 66645405 66645455 -53099443 + AT_rich Low_complexity Low_complexity 1 50 0 1513 227 40 5 chr13 66646065 66646440 -53098458 + MLT1B LTR MaLR 1 388 -2 23 0 0 0 chr13 66646843 66646866 -53098032 + AT_rich Low_complexity Low_complexity 1 23 0 374 342 64 57 chr13 66647807 66648088 -53096810 - L2 LINE L2 -4 3268 2986 361 274 82 7 chr13 66648300 66648446 -53096452 + MIR SINE MIR 91 247 -15 837 236 84 70 chr13 66648582 66648951 -53095947 - MLT1A2 LTR MaLR 0 374 1 1101 215 42 0 chr13 66649052 66649289 -53095609 + L1PB4 LINE L1 2 248 -6601 * 1376 234 64 9 chr13 66649287 66649629 -53095269 + L1PB4 LINE L1 87 447 -6402 5417 175 27 4 chr13 66649632 66651285 -53093613 + L1PB4 LINE L1 4804 6494 -364 216 0 0 0 chr13 66651311 66651335 -53093563 + (TA)n Simple_repeat Simple_repeat 2 25 0 1031 170 39 15 chr13 66651347 66651553 -53093345 + L1PB4 LINE L1 6647 6857 -1 970 209 70 0 chr13 66652060 66652166 -53092732 - MER46A DNA MER2_type -2495 236 139 1941 162 0 3 chr13 66652166 66652468 -53092430 - AluSx SINE Alu -11 301 1 970 209 70 0 chr13 66652468 66652576 -53092322 - MER46A DNA MER2_type -2592 139 7 746 97 9 0 chr13 66652722 66652835 -53092063 + (TTTTC)n Simple_repeat Simple_repeat 2 115 0 597 274 15 0 chr13 66652846 66652981 -53091917 - AluJ SINE Alu -41 271 135 405 265 59 0 chr13 66652972 66653074 -53091824 - AluJ SINE Alu -204 108 1 * 596 232 86 56 chr13 66654730 66654928 -53089970 - MIR SINE MIR -37 225 22 379 221 92 28 chr13 66655051 66655223 -53089675 - MLT1G LTR MaLR -2 553 356 684 294 40 78 chr13 66655278 66655616 -53089282 - MLT1G LTR MaLR -221 369 45 2076 158 127 22 chr13 66655616 66656073 -53088825 + MLT1D LTR MaLR 1 505 0 684 294 40 78 chr13 66656073 66656108 -53088790 - MLT1G LTR MaLR -545 45 10 23 0 0 0 chr13 66657235 66657258 -53087640 + AT_rich Low_complexity Low_complexity 1 23 0 263 269 15 0 chr13 66657440 66657507 -53087391 - L2 LINE L2 -1 3271 3204 300 317 69 10 chr13 66657913 66658014 -53086884 - MLT1J LTR MaLR -173 338 232 192 361 16 0 chr13 66659060 66659121 -53085777 - L2 LINE L2 -25 3247 3186 614 320 56 20 chr13 66660376 66660626 -53084272 + MIR SINE MIR 3 261 -1 518 260 127 61 chr13 66661421 66661545 -53083353 + MER20B DNA MER1_type 34 148 -635 1811 204 68 46 chr13 66661545 66662044 -53082854 - MER67D LTR ERV1 -4 510 1 518 260 127 61 chr13 66662044 66662141 -53082757 + MER20B DNA MER1_type 148 237 -546 2304 136 70 22 chr13 66662141 66662553 -53082345 + MSTB1 LTR MaLR 1 432 0 518 260 127 61 chr13 66662553 66662691 -53082207 + MER20B DNA MER1_type 237 418 -365 23 0 0 0 chr13 66662711 66662734 -53082164 + AT_rich Low_complexity Low_complexity 1 23 0 2165 178 124 42 chr13 66662734 66663308 -53081590 - L1MA8 LINE L1 -20 6271 5651 3378 64 0 7 chr13 66663354 66663805 -53081093 - LTR7 LTR ERV1 -2 448 1 2543 83 45 0 chr13 66663805 66664180 -53080718 - HERVH LTR ERV1 0 7713 7322 1403 117 18 27 chr13 66664178 66664400 -53080498 - HERVH LTR ERV1 -1894 5819 5600 * 4232 143 6 1 chr13 66664401 66665060 -53079838 - HERVH LTR ERV1 -2564 5149 4488 3398 103 2 4 chr13 66665062 66665557 -53079341 - HERVH LTR ERV1 -3720 3993 3500 851 162 20 0 chr13 66665556 66665704 -53079194 - HERVH LTR ERV1 -4423 3290 3140 * 10179 106 8 8 chr13 66665698 66667212 -53077686 - HERVH LTR ERV1 -4726 2987 1474 21 71 0 0 chr13 66667333 66667375 -53077523 + AT_rich Low_complexity Low_complexity 1 42 0 304 253 51 0 chr13 66667429 66667508 -53077390 - MER104 DNA Tc2 -79 101 19 373 262 116 65 chr13 66667531 66667806 -53077092 - L1MEd LINE L1 -2875 3254 2966 21 0 0 0 chr13 66668041 66668062 -53076836 + AT_rich Low_complexity Low_complexity 1 21 0 629 307 116 33 chr13 66668133 66668791 -53076107 - L1MEd LINE L1 -4965 1154 443 325 349 63 67 chr13 66668901 66669139 -53075759 - L1MEd LINE L1 -5753 366 130 3343 191 91 15 chr13 66669160 66669916 -53074982 - L1MA9 LINE L1 -38 6274 5461 23 33 0 0 chr13 66670634 66670664 -53074234 + AT_rich Low_complexity Low_complexity 1 30 0 307 246 70 70 chr13 66670757 66670899 -53073999 + LTR41 LTR ERVL 3 144 -629 366 233 185 7 chr13 66670980 66671126 -53073772 + MER53 DNA DNA 1 172 -17 413 238 28 144 chr13 66671183 66671503 -53073395 + LTR41 LTR ERVL 480 762 -11 259 357 71 10 chr13 66671890 66672086 -53072812 + ERVL LTR ERVL 409 616 -5148 344 275 27 77 chr13 66672529 66672835 -53072063 + LTR41 LTR ERVL 494 795 0 21 0 0 0 chr13 66673369 66673390 -53071508 + AT_rich Low_complexity Low_complexity 1 21 0 2179 131 3 3 chr13 66674020 66674325 -53070573 + AluSg SINE Alu 1 305 -5 234 330 41 31 chr13 66674986 66675083 -53069815 + MER5B DNA MER1_type 61 158 -20 509 312 98 14 chr13 66675561 66675846 -53069052 + L2 LINE L2 2201 2509 -805 4609 93 10 16 chr13 66675860 66676534 -53068364 + LTR8 LTR ERV1 1 670 -21 1888 172 44 37 chr13 66676535 66677071 -53067827 + MLT2A2 LTR ERVL 11 554 0 34067 103 19 32 chr13 66677071 66678202 -53066696 + HERVL-A2 LTR ERVL 1 1145 -4509 487 173 0 0 chr13 66678202 66678312 -53066586 + AluSp/q SINE Alu 204 313 0 34067 103 19 32 chr13 66678312 66682426 -53062472 + HERVL-A2 LTR ERVL 1145 5259 -395 333 0 0 0 chr13 66682958 66682995 -53061903 + (CA)n Simple_repeat Simple_repeat 1 37 0 209 305 37 12 chr13 66683996 66684078 -53060820 + L2 LINE L2 3230 3313 0 213 132 0 26 chr13 66684200 66684238 -53060660 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 24 0 0 0 chr13 66685377 66685401 -53059497 + AT_rich Low_complexity Low_complexity 1 24 0 1348 173 58 40 chr13 66685870 66686147 -53058751 + AluJo SINE Alu 1 282 -30 261 0 0 0 chr13 66686182 66686211 -53058687 + (CA)n Simple_repeat Simple_repeat 2 30 0 561 176 8 32 chr13 66686513 66686638 -53058260 - MER69 DNA AcHobo -2401 125 4 24 32 0 0 chr13 66687966 66687997 -53056901 + AT_rich Low_complexity Low_complexity 1 31 0 524 299 9 50 chr13 66688157 66688378 -53056520 + MIR SINE MIR 51 262 0 3946 157 75 9 chr13 66689371 66690140 -53054758 + LTR1B LTR ERV1 7 826 0 222 270 0 16 chr13 66690151 66690214 -53054684 + MIR SINE MIR 85 146 -62 285 347 8 25 chr13 66690327 66690448 -53054450 + MIR SINE MIR 36 154 -108 40321 38 22 1 chr13 66690469 66696508 -53048390 + L1PA3 LINE L1 2 6167 0 269 338 0 0 chr13 66696560 66696640 -53048258 + MIR SINE MIR 183 262 0 22 0 0 0 chr13 66696955 66696977 -53047921 + AT_rich Low_complexity Low_complexity 1 22 0 559 254 28 7 chr13 66696992 66697142 -53047756 - MIR SINE MIR -38 224 73 312 325 159 11 chr13 66697285 66697562 -53047336 + L2 LINE L2 1799 2116 -1198 512 316 150 31 chr13 66697653 66698007 -53046891 + L2 LINE L2 2330 2725 -589 1161 252 56 54 chr13 66698452 66698956 -53045942 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr13 66699480 66699502 -53045396 + AT_rich Low_complexity Low_complexity 1 22 0 248 197 61 45 chr13 66700515 66700581 -53044317 + MER5A DNA MER1_type 40 106 -83 750 339 99 5 chr13 66701433 66701828 -53043070 + L2 LINE L2 1001 1432 -1882 2199 78 0 110 chr13 66701840 66702186 -53042712 + AluY SINE Alu 1 308 -3 384 241 133 108 chr13 66702222 66702463 -53042435 - MIR SINE MIR -3 259 13 198 271 0 21 chr13 66702532 66702580 -53042318 - L2 LINE L2 -23 3249 3203 281 329 36 36 chr13 66702664 66702831 -53042067 + MIR3 SINE MIR 39 205 -3 1074 277 113 46 chr13 66702858 66703028 -53041870 + MLT1H1 LTR MaLR 1 158 -397 1803 138 39 62 chr13 66703028 66703412 -53041486 - THE1C LTR MaLR 0 375 1 9437 129 35 40 chr13 66703412 66705000 -53039898 - THE1C-int LTR MaLR 0 1580 1 2061 133 26 32 chr13 66705000 66705377 -53039521 - THE1C LTR MaLR 0 375 1 1074 277 113 46 chr13 66705377 66705724 -53039174 + MLT1H1 LTR MaLR 157 555 0 968 293 53 49 chr13 66706394 66706824 -53038074 - MLT2E LTR ERVL -195 433 2 23 0 0 0 chr13 66707759 66707782 -53037116 + AT_rich Low_complexity Low_complexity 1 23 0 344 103 17 0 chr13 66708849 66708907 -53035991 + (TG)n Simple_repeat Simple_repeat 2 60 0 458 325 68 4 chr13 66709130 66709382 -53035516 - MLT1K LTR MaLR -7 581 314 27 103 0 0 chr13 66711452 66711549 -53033349 + AT_rich Low_complexity Low_complexity 1 97 0 26 30 0 0 chr13 66711741 66711774 -53033124 + AT_rich Low_complexity Low_complexity 1 33 0 480 267 42 21 chr13 66712955 66713146 -53031752 - MER92B LTR ERV1 -51 585 391 4060 219 3 9 chr13 66713150 66714181 -53030717 + L1 LINE L1 4253 5277 -869 434 271 12 6 chr13 66714195 66714361 -53030537 - MER20B DNA MER1_type -136 647 481 1816 191 64 10 chr13 66714392 66714743 -53030155 + L1M2 LINE L1 4896 5227 -1073 1673 164 49 30 chr13 66714743 66715109 -53029789 - THE1C LTR MaLR 0 375 3 8139 193 19 35 chr13 66715111 66716790 -53028108 - THE1C-int LTR MaLR 0 1651 1 1655 166 61 22 chr13 66716790 66717151 -53027747 - THE1C LTR MaLR 0 375 1 1816 191 64 10 chr13 66717151 66717541 -53027357 + L1M2 LINE L1 5226 5667 -633 3410 69 0 7 chr13 66717915 66718366 -53026532 + LTR7 LTR ERV1 1 448 -2 10509 94 17 101 chr13 66718368 66720447 -53024451 + HERVH LTR ERV1 1 1906 -5807 250 137 14 14 chr13 66721883 66721956 -53022942 + (CAAA)n Simple_repeat Simple_repeat 3 75 0 23 0 0 0 chr13 66722869 66722892 -53022006 + AT_rich Low_complexity Low_complexity 1 23 0 240 311 22 0 chr13 66722929 66723019 -53021879 - MER112 DNA MER1_type -150 110 19 2009 128 10 3 chr13 66723956 66724252 -53020646 + AluSq SINE Alu 1 298 -15 750 247 104 0 chr13 66724377 66724559 -53020339 + MIR SINE MIR 32 232 -30 213 39 0 0 chr13 66725106 66725132 -53019766 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2046 173 10 35 chr13 66725146 66725550 -53019348 + MSTD LTR MaLR 1 394 -2 207 325 52 0 chr13 66726193 66726270 -53018628 - L2 LINE L2 -8 3305 3225 206 311 204 10 chr13 66726375 66726478 -53018420 - MIR SINE MIR -17 245 123 199 383 0 0 chr13 66726664 66726724 -53018174 - L2 LINE L2 -10 3262 3203 278 261 29 0 chr13 66727770 66727839 -53017059 - MLT1L LTR MaLR -350 265 195 1710 177 71 37 chr13 66728127 66728478 -53016420 + THE1B LTR MaLR 1 363 -1 11052 113 4 4 chr13 66728479 66730059 -53014839 + THE1B-int LTR MaLR 2 1580 0 1880 161 72 23 chr13 66730059 66730406 -53014492 + THE1B LTR MaLR 1 364 0 2131 139 72 20 chr13 66730437 66730783 -53014115 - THE1B LTR MaLR 0 364 1 29 60 0 0 chr13 66731222 66731272 -53013626 + AT_rich Low_complexity Low_complexity 1 50 0 36 23 0 0 chr13 66731319 66731362 -53013536 + AT_rich Low_complexity Low_complexity 1 43 0 319 217 0 14 chr13 66732597 66732666 -53012232 - MSTB2 LTR MaLR 0 457 390 7765 60 1 4 chr13 66732669 66734441 -53010457 - L1PA6 LINE L1 -6 6148 4377 3672 251 121 82 chr13 66734442 66734566 -53010332 - MSTD-int LTR MaLR -147 1588 1470 1885 171 111 5 chr13 66734566 66734953 -53009945 - MSTA LTR MaLR 0 428 1 3672 251 121 82 chr13 66734953 66736353 -53008545 - MSTD-int LTR MaLR -265 1470 4 1068 215 26 19 chr13 66736357 66736693 -53008205 - MSTD LTR MaLR 0 396 1 6296 128 19 29 chr13 66738531 66739613 -53005285 - MER11C LTR ERVK 0 1071 1 670 310 64 61 chr13 66740156 66740745 -53004153 - L2 LINE L2 0 3272 2668 276 340 164 52 chr13 66741162 66741791 -53003107 - L2 LINE L2 -1017 2297 1599 190 0 32 32 chr13 66741839 66741870 -53003028 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1618 139 4 0 chr13 66741881 66742118 -53002780 - AluSx SINE Alu -25 287 50 1711 179 3 13 chr13 66742292 66742594 -53002304 + AluJb SINE Alu 1 299 -13 206 0 69 0 chr13 66742976 66743005 -53001893 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 216 97 0 0 chr13 66743026 66743057 -53001841 + (CTA)n Simple_repeat Simple_repeat 1 31 0 419 276 9 9 chr13 66743061 66743177 -53001721 - MIR SINE MIR -12 250 135 520 307 64 40 chr13 66744947 66745198 -52999700 + MIR SINE MIR 5 261 -1 21 36 0 0 chr13 66745907 66745935 -52998963 + AT_rich Low_complexity Low_complexity 1 28 0 2026 141 0 0 chr13 66746417 66746715 -52998183 - AluSx SINE Alu -14 298 1 536 253 105 78 chr13 66747387 66747644 -52997254 - L2 LINE L2 0 3313 3050 1397 202 0 24 chr13 66747645 66747937 -52996961 + AluJb SINE Alu 3 287 -25 30 27 0 0 chr13 66747937 66747974 -52996924 + AT_rich Low_complexity Low_complexity 1 37 0 3283 253 37 11 chr13 66747995 66749171 -52995727 + L1ME2 LINE L1 2736 3942 -2204 1406 214 94 10 chr13 66749166 66749682 -52995216 + L1ME2 LINE L1 4938 5496 -678 * 897 233 0 0 chr13 66749683 66749863 -52995035 + AluJb SINE Alu 84 263 -49 1256 226 22 61 chr13 66749889 66750409 -52994489 + L1ME2 LINE L1 5474 5946 -218 * 1318 231 39 12 chr13 66750257 66750594 -52994304 + L1MB4 LINE L1 5798 6143 -37 198 246 0 0 chr13 66750627 66750688 -52994210 + GA-rich Low_complexity Low_complexity 2 62 0 * 241 49 134 12 chr13 66750679 66750761 -52994137 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 1967 284 111 42 chr13 66750763 66751561 -52993337 - L2 LINE L2 -120 3193 2298 432 0 0 0 chr13 66751561 66751609 -52993289 + (TG)n Simple_repeat Simple_repeat 1 48 0 1967 284 111 42 chr13 66751609 66751961 -52992937 - L2 LINE L2 -1015 2298 1972 21 36 0 0 chr13 66752594 66752622 -52992276 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 66753464 66753485 -52991413 + AT_rich Low_complexity Low_complexity 1 21 0 221 163 0 0 chr13 66755122 66755165 -52989733 + T-rich Low_complexity Low_complexity 1 43 0 216 271 0 14 chr13 66756013 66756083 -52988815 + A-rich Low_complexity Low_complexity 3 71 0 243 0 0 0 chr13 66756289 66756316 -52988582 + (A)n Simple_repeat Simple_repeat 1 27 0 860 76 8 0 chr13 66758457 66758575 -52986323 + L1PB3 LINE L1 6036 6154 0 470 318 15 0 chr13 66759965 66760097 -52984801 - L2 LINE L2 0 3272 3139 1554 263 42 9 chr13 66760487 66760921 -52983977 - MER74C LTR ERVL 0 460 13 231 36 0 0 chr13 66760921 66760949 -52983949 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 297 83 0 0 chr13 66761059 66761107 -52983791 - L1MA3 LINE L1 0 6305 6258 26 50 0 0 chr13 66762026 66762066 -52982832 + AT_rich Low_complexity Low_complexity 1 40 0 258 32 0 0 chr13 66763366 66763397 -52981501 + (TC)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr13 66763396 66763419 -52981479 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 205 342 72 33 chr13 66764118 66764270 -52980628 + MIR3 SINE MIR 50 207 -1 1345 151 159 4 chr13 66764398 66764656 -52980242 + AluJb SINE Alu 1 298 -4 475 274 166 6 chr13 66766070 66766227 -52978671 - MER5A DNA MER1_type 0 189 8 321 283 75 19 chr13 66766290 66766396 -52978502 - MER5A DNA MER1_type -5 184 73 498 331 114 7 chr13 66766396 66766686 -52978212 + L2 LINE L2 2020 2340 -974 1940 230 72 41 chr13 66766882 66767421 -52977477 + MLT1E2 LTR MaLR 49 604 -22 1050 306 106 25 chr13 66767473 66767512 -52977386 + L2 LINE L2 2559 2593 -720 2041 128 3 0 chr13 66767512 66767809 -52977089 - AluSx SINE Alu -12 300 3 1050 306 106 25 chr13 66767809 66767889 -52977009 + L2 LINE L2 2593 2665 -648 2269 196 34 20 chr13 66767889 66768384 -52976514 - MLT1D LTR MaLR -3 502 1 1050 306 106 25 chr13 66768384 66768760 -52976138 + L2 LINE L2 2665 3123 -190 1947 154 0 0 chr13 66768760 66769053 -52975845 - AluSx SINE Alu -19 293 1 1050 306 106 25 chr13 66769053 66769243 -52975655 + L2 LINE L2 3123 3296 -17 21 0 0 0 chr13 66769401 66769422 -52975476 + AT_rich Low_complexity Low_complexity 1 21 0 1589 157 81 31 chr13 66771007 66771364 -52973534 - THE1C LTR MaLR 0 375 1 529 281 33 24 chr13 66771522 66771732 -52973166 - LTR33 LTR ERVL -8 513 302 21 0 0 0 chr13 66774000 66774021 -52970877 + AT_rich Low_complexity Low_complexity 1 21 0 211 161 18 54 chr13 66775674 66775730 -52969168 + T-rich Low_complexity Low_complexity 2 55 0 356 320 102 0 chr13 66776384 66776512 -52968386 - MIR3 SINE MIR -32 176 36 189 132 0 0 chr13 66778429 66778467 -52966431 + (A)n Simple_repeat Simple_repeat 1 38 0 1799 93 15 7 chr13 66778472 66778742 -52966156 - AluY SINE Alu -34 277 6 200 325 47 59 chr13 66779214 66779383 -52965515 - L3b LINE CR1 -140 1443 1277 268 323 53 42 chr13 66779624 66779813 -52965085 + MIR SINE MIR 14 204 -58 27 49 0 0 chr13 66780479 66780520 -52964378 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 66782670 66782695 -52962203 + AT_rich Low_complexity Low_complexity 1 25 0 201 154 0 0 chr13 66783138 66783177 -52961721 + (TG)n Simple_repeat Simple_repeat 2 40 0 340 298 122 0 chr13 66783662 66783793 -52961105 - L2 LINE L2 -1 3312 3166 240 35 0 0 chr13 66784840 66784869 -52960029 + (TA)n Simple_repeat Simple_repeat 2 30 0 1364 169 138 65 chr13 66785830 66785955 -52958943 + MLT2D LTR ERVL 1 115 -299 2557 114 75 4 chr13 66785955 66786409 -52958489 - L1MA4 LINE L1 -9 6291 5806 1364 169 138 65 chr13 66786409 66786668 -52958230 + MLT2D LTR ERVL 115 413 -1 372 322 81 24 chr13 66787497 66787708 -52957190 - MIR SINE MIR -8 254 32 186 178 0 67 chr13 66789604 66789629 -52955269 - MER5A DNA MER1_type -27 162 140 225 0 0 0 chr13 66789629 66789654 -52955244 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 186 178 0 67 chr13 66789654 66789673 -52955225 - MER5A DNA MER1_type -49 140 121 214 363 55 0 chr13 66790072 66790163 -52954735 + MIR SINE MIR 79 174 -88 263 188 104 42 chr13 66792678 66792774 -52952124 - MIR SINE MIR -43 219 118 200 125 0 25 chr13 66793131 66793171 -52951727 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1259 177 4 13 chr13 66793187 66793424 -52951474 - AluJo SINE Alu -77 235 1 353 275 150 31 chr13 66793480 66793640 -52951258 + MER5A DNA MER1_type 11 189 0 724 279 92 25 chr13 66794433 66794643 -52950255 - MIR SINE MIR -3 259 30 1489 164 103 0 chr13 66794643 66794806 -52950092 - AluSx SINE Alu -2 310 165 415 0 0 35 chr13 66794806 66794863 -52950035 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 1489 164 103 0 chr13 66794863 66794980 -52949918 - AluSx SINE Alu -147 165 1 724 279 92 25 chr13 66794980 66795009 -52949889 - MIR SINE MIR -232 30 4 1840 222 47 69 chr13 66795223 66795859 -52949039 - MLT1E2 LTR MaLR 0 626 5 2097 100 55 0 chr13 66796170 66796461 -52948437 - AluSq SINE Alu -6 307 1 1293 142 46 5 chr13 66800427 66800645 -52944253 - AluSg/x SINE Alu -8 302 76 22 0 0 0 chr13 66800707 66800729 -52944169 + AT_rich Low_complexity Low_complexity 1 22 0 206 304 101 0 chr13 66800786 66800865 -52944033 + L2 LINE L2 1827 1913 -1401 267 156 0 0 chr13 66801243 66801288 -52943610 + L2 LINE L2 3269 3313 0 193 393 61 10 chr13 66802061 66802356 -52942542 + L2 LINE L2 2167 2476 -838 439 283 96 61 chr13 66802357 66802587 -52942311 + L2 LINE L2 1970 2207 -1107 756 259 90 22 chr13 66802588 66802866 -52942032 + L2 LINE L2 2396 2692 -622 325 258 38 38 chr13 66803125 66803257 -52941641 - MIR SINE MIR -3 259 128 21 36 0 0 chr13 66803511 66803539 -52941359 + AT_rich Low_complexity Low_complexity 1 28 0 335 317 120 6 chr13 66803593 66803776 -52941122 - MIR SINE MIR -10 252 49 2118 136 13 0 chr13 66803860 66804169 -52940729 - AluSq SINE Alu 0 313 1 1282 204 18 83 chr13 66804385 66804782 -52940116 - MLT1A2 LTR MaLR 0 374 4 21 0 0 0 chr13 66806691 66806712 -52938186 + AT_rich Low_complexity Low_complexity 1 21 0 527 186 65 73 chr13 66806964 66807088 -52937810 - MER5A DNA MER1_type -53 136 14 2746 206 47 37 chr13 66807249 66807894 -52937004 - MER82 DNA MER2_type 0 653 3 22 56 0 0 chr13 66808037 66808073 -52936825 + AT_rich Low_complexity Low_complexity 1 36 0 391 355 21 21 chr13 66808831 66809017 -52935881 - MIR SINE MIR -50 212 27 22 35 0 0 chr13 66810503 66810532 -52934366 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 66813396 66813431 -52931467 + AT_rich Low_complexity Low_complexity 1 35 0 204 228 0 0 chr13 66814672 66814729 -52930169 + CT-rich Low_complexity Low_complexity 2 58 0 2059 132 7 0 chr13 66814934 66815230 -52929668 + AluSx SINE Alu 1 298 -14 2198 119 0 0 chr13 66815910 66816221 -52928677 + AluSq SINE Alu 3 313 0 286 299 30 0 chr13 66817800 66817867 -52927031 + L2 LINE L2 3204 3272 0 204 328 0 0 chr13 66817868 66817926 -52926972 + CT-rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr13 66818607 66818628 -52926270 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr13 66819110 66819139 -52925759 + AT_rich Low_complexity Low_complexity 1 29 0 264 224 0 0 chr13 66820594 66820661 -52924237 + (TA)n Simple_repeat Simple_repeat 1 67 0 2012 125 65 29 chr13 66820714 66821065 -52923833 - THE1B LTR MaLR 0 364 1 1743 182 56 0 chr13 66822089 66822430 -52922468 + MER67D LTR ERV1 4 363 -151 223 182 0 0 chr13 66822501 66822545 -52922353 + T-rich Low_complexity Low_complexity 1 44 0 1571 210 0 10 chr13 66822554 66822854 -52922044 - AluJo SINE Alu -15 297 1 289 181 0 28 chr13 66822855 66822927 -52921971 + MER31B LTR ERV1 395 464 -2 217 343 39 54 chr13 66824104 66824308 -52920590 - L2 LINE L2 0 3313 3113 2424 199 21 54 chr13 66824943 66825557 -52919341 + L1MB2 LINE L1 5574 6167 -4 228 267 89 44 chr13 66825838 66825928 -52918970 + MIR SINE MIR 14 107 -155 263 302 137 22 chr13 66826527 66826666 -52918232 - MIR SINE MIR -41 221 67 238 270 126 27 chr13 66826901 66827012 -52917886 - MIR3 SINE MIR -11 197 76 911 189 18 0 chr13 66829286 66829455 -52915443 - MER5A DNA MER1_type 0 189 18 28 0 0 0 chr13 66831437 66831465 -52913433 + AT_rich Low_complexity Low_complexity 1 28 0 2588 40 0 0 chr13 66832579 66832879 -52912019 - AluY SINE Alu -6 305 6 2042 131 13 3 chr13 66834791 66835096 -52909802 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 66836092 66836113 -52908785 + AT_rich Low_complexity Low_complexity 1 21 0 784 243 38 21 chr13 66836453 66836692 -52908206 - L1MA9 LINE L1 -30 6282 6040 310 224 24 12 chr13 66836802 66836887 -52908011 - L1MA9 LINE L1 -192 6120 6035 1058 171 35 70 chr13 66836900 66836917 -52907981 - L1MA9 LINE L1 -256 6056 6040 1976 125 0 10 chr13 66836917 66837205 -52907693 - AluSx SINE Alu -27 285 1 1058 171 35 70 chr13 66837205 66837474 -52907424 - L1MA9 LINE L1 -272 6040 5780 23 0 0 0 chr13 66837893 66837916 -52906982 + AT_rich Low_complexity Low_complexity 1 23 0 1717 167 85 39 chr13 66839600 66840013 -52904885 + MSTB1 LTR MaLR 1 432 0 183 295 103 0 chr13 66840084 66840162 -52904736 + L2 LINE L2 3226 3311 -2 2052 132 7 0 chr13 66842688 66842983 -52901915 + AluSx SINE Alu 1 297 -15 264 59 0 0 chr13 66844110 66844144 -52900754 + (TA)n Simple_repeat Simple_repeat 2 35 0 22 56 0 0 chr13 66845843 66845879 -52899019 + AT_rich Low_complexity Low_complexity 1 36 0 194 336 149 0 chr13 66846026 66846133 -52898765 + L2 LINE L2 3148 3270 -2 2102 104 7 0 chr13 66847559 66847882 -52897016 + AluSg SINE Alu 1 310 0 183 80 0 0 chr13 66848815 66848840 -52896058 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 196 356 30 10 chr13 66848951 66849052 -52895846 + MIR SINE MIR 143 245 -17 1559 216 0 0 chr13 66849377 66849655 -52895243 + AluJb SINE Alu 3 280 -32 297 221 0 0 chr13 66849656 66849724 -52895174 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 234 289 0 11 chr13 66849724 66849814 -52895084 + L1MC4 LINE L1 6614 6702 -1340 217 185 31 0 chr13 66849842 66849907 -52894991 + (TA)n Simple_repeat Simple_repeat 1 67 0 27 29 0 0 chr13 66850179 66850213 -52894685 + AT_rich Low_complexity Low_complexity 1 34 0 235 343 9 37 chr13 66850286 66850394 -52894504 - MIR SINE MIR -64 144 40 186 333 60 17 chr13 66851329 66851446 -52893452 + MIR SINE MIR 124 245 -17 198 174 0 0 chr13 66851941 66851987 -52892911 + A-rich Low_complexity Low_complexity 1 46 0 269 160 0 0 chr13 66852040 66852090 -52892808 + Alu SINE Alu 253 302 0 2239 115 5 49 chr13 66853403 66853793 -52891105 + THE1C LTR MaLR 1 373 -2 277 300 89 47 chr13 66854250 66854440 -52890458 + MLT1L LTR MaLR 201 398 -217 25 0 0 0 chr13 66854666 66854691 -52890207 + AT_rich Low_complexity Low_complexity 1 25 0 193 279 163 23 chr13 66854904 66854990 -52889908 - L3 LINE CR1 -744 833 736 1485 155 15 42 chr13 66855385 66855649 -52889249 - AluJb SINE Alu -20 292 36 546 222 52 0 chr13 66855776 66855911 -52888987 - Charlie1 DNA MER1_type 0 2761 2620 * 622 220 143 24 chr13 66855895 66856104 -52888794 - Charlie1 DNA MER1_type -2522 239 6 21 0 0 0 chr13 66856777 66856798 -52888100 + AT_rich Low_complexity Low_complexity 1 21 0 435 317 0 0 chr13 66858030 66858153 -52886745 - MER94 DNA DNA -3 131 9 309 284 43 49 chr13 66858438 66858600 -52886298 + MIR SINE MIR 25 185 -77 213 318 57 11 chr13 66858902 66858990 -52885908 + L2 LINE L2 3176 3267 -46 23 0 0 0 chr13 66859049 66859072 -52885826 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr13 66860011 66860045 -52884853 + AT_rich Low_complexity Low_complexity 1 34 0 2168 4 0 0 chr13 66860289 66860525 -52884373 - AluYb8 SINE Alu -11 307 72 1258 196 8 12 chr13 66863561 66863801 -52881097 - AluJb SINE Alu -48 264 26 527 66 13 0 chr13 66863860 66863936 -52880962 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 876 200 18 24 chr13 66864440 66864610 -52880288 - AluJb SINE Alu -48 264 96 205 287 148 20 chr13 66864833 66864934 -52879964 - L3b LINE CR1 -263 1320 1207 2193 92 0 10 chr13 66865647 66865970 -52878928 + AluY SINE Alu 1 311 0 5208 113 51 9 chr13 66869238 66869275 -52875623 + L1P LINE L1 2876 2910 -3236 6288 75 9 0 chr13 66869275 66870752 -52874146 - L1PA7 LINE L1 -5 6149 4645 5208 113 51 9 chr13 66870752 66871590 -52873308 + L1P LINE L1 2910 3788 -2358 24929 112 11 34 chr13 66871604 66876556 -52868342 + L1P3 LINE L1 9 4942 -1519 203 360 73 0 chr13 66876572 66876708 -52868190 + L3 LINE CR1 1357 1502 -75 22 0 0 0 chr13 66876997 66877019 -52867879 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 66878836 66878859 -52866039 + AT_rich Low_complexity Low_complexity 1 23 0 320 276 114 0 chr13 66880800 66880905 -52863993 + MIR SINE MIR 88 204 -58 22 0 0 0 chr13 66881673 66881695 -52863203 + AT_rich Low_complexity Low_complexity 1 22 0 254 232 24 61 chr13 66882768 66882850 -52862048 - L2 LINE L2 0 3272 3194 480 336 53 32 chr13 66883487 66883734 -52861164 - MIR SINE MIR -10 252 1 21 0 0 0 chr13 66886045 66886066 -52858832 + AT_rich Low_complexity Low_complexity 1 21 0 349 327 105 13 chr13 66886670 66886823 -52858075 + L2 LINE L2 3143 3309 -4 24 0 0 0 chr13 66888339 66888363 -52856535 + AT_rich Low_complexity Low_complexity 1 24 0 987 223 62 15 chr13 66888375 66888702 -52856196 + MSTD LTR MaLR 1 389 -7 2365 56 7 0 chr13 66889383 66889671 -52855227 + AluY SINE Alu 14 303 -8 1169 217 36 26 chr13 66889784 66890093 -52854805 + L1ME3A LINE L1 5384 5695 -475 335 248 67 0 chr13 66890113 66890196 -52854702 + L1ME3A LINE L1 6021 6114 -56 2125 132 0 0 chr13 66890196 66890492 -52854406 + AluSx SINE Alu 1 296 -16 335 248 67 0 chr13 66890492 66890513 -52854385 + L1ME3A LINE L1 6114 6132 -38 25 31 0 0 chr13 66890543 66890575 -52854323 + AT_rich Low_complexity Low_complexity 1 32 0 438 312 63 10 chr13 66890746 66890951 -52853947 + MLT1J2 LTR MaLR 3 218 -232 296 232 85 0 chr13 66891021 66891103 -52853795 + MLT1J2 LTR MaLR 344 432 -18 189 381 0 0 chr13 66891488 66891572 -52853326 + MIR SINE MIR 69 152 -110 788 177 44 25 chr13 66891602 66891805 -52853093 + L1MA9 LINE L1 6067 6273 -39 29 0 0 0 chr13 66892756 66892785 -52852113 + AT_rich Low_complexity Low_complexity 1 29 0 191 256 105 23 chr13 66892837 66892923 -52851975 - MIR SINE MIR -74 134 42 181 284 12 74 chr13 66893112 66893193 -52851705 + L2 LINE L2 3173 3248 -24 27 62 0 0 chr13 66893928 66893976 -52850922 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr13 66894808 66894834 -52850064 + AT_rich Low_complexity Low_complexity 1 26 0 2175 110 0 25 chr13 66896785 66897104 -52847794 - AluSx SINE Alu -1 311 1 271 72 108 14 chr13 66897287 66897426 -52847472 + (TA)n Simple_repeat Simple_repeat 1 152 0 729 167 29 11 chr13 66897674 66898124 -52846774 + (TA)n Simple_repeat Simple_repeat 1 458 0 200 191 0 24 chr13 66898355 66898397 -52846501 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 57 0 0 chr13 66899730 66899765 -52845133 + AT_rich Low_complexity Low_complexity 1 35 0 186 300 33 0 chr13 66900629 66900689 -52844209 + L3 LINE CR1 1052 1113 -464 271 304 44 105 chr13 66901658 66901839 -52843059 + MIR SINE MIR 15 184 -78 2339 51 3 10 chr13 66902982 66903277 -52841621 + AluY SINE Alu 1 293 -18 1127 37 0 0 chr13 66903277 66903413 -52841485 + L1PA5 LINE L1 6012 6147 -7 23 54 0 0 chr13 66903417 66903454 -52841444 + AT_rich Low_complexity Low_complexity 1 37 0 338 164 15 15 chr13 66903961 66904028 -52840870 - MER67D LTR ERV1 0 514 448 727 187 0 0 chr13 66904028 66904151 -52840747 + FLAM_C SINE Alu 1 123 -20 180 0 0 0 chr13 66904152 66904172 -52840726 + (GAA)n Simple_repeat Simple_repeat 2 21 0 1160 168 50 185 chr13 66904173 66904654 -52840244 - MER67D LTR ERV1 -78 436 21 233 362 35 0 chr13 66904766 66904882 -52840016 - MIR SINE MIR -25 237 118 1041 169 11 0 chr13 66905351 66905534 -52839364 - L1MB5 LINE L1 -8 6166 5982 346 255 283 0 chr13 66905613 66905758 -52839140 - MIR SINE MIR -10 252 67 1976 132 0 0 chr13 66905758 66906092 -52838806 + AluY SINE Alu 1 311 0 677 150 0 9 chr13 66907832 66907945 -52836953 + FLAM_A SINE Alu 1 112 -30 2241 103 0 10 chr13 66907945 66908246 -52836652 + THE1B LTR MaLR 2 299 -65 1905 110 113 6 chr13 66908246 66908572 -52836326 + THE1B LTR MaLR 1 361 -3 21 0 0 0 chr13 66908578 66908599 -52836299 + AT_rich Low_complexity Low_complexity 1 21 0 269 333 45 9 chr13 66909057 66909168 -52835730 - L2 LINE L2 -7 3306 3192 497 250 140 10 chr13 66909172 66909363 -52835535 - MLT1H LTR MaLR 0 549 339 314 224 15 0 chr13 66909367 66909434 -52835464 - MLT1H LTR MaLR -418 131 64 197 286 185 8 chr13 66910060 66910179 -52834719 - MIR SINE MIR -42 220 81 264 326 0 11 chr13 66910369 66910458 -52834440 + MER5A DNA MER1_type 63 150 -39 24 0 0 0 chr13 66910684 66910708 -52834190 + AT_rich Low_complexity Low_complexity 1 24 0 449 230 145 25 chr13 66911488 66911688 -52833210 - Charlie5 DNA MER1_type -2372 240 17 741 144 26 18 chr13 66911944 66912216 -52832682 + (TA)n Simple_repeat Simple_repeat 1 274 0 592 174 28 17 chr13 66912191 66912369 -52832529 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 * 200 191 0 24 chr13 66912625 66912667 -52832231 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 57 0 0 chr13 66914000 66914035 -52830863 + AT_rich Low_complexity Low_complexity 1 35 0 186 300 33 0 chr13 66914899 66914959 -52829939 + L3 LINE CR1 1052 1113 -464 271 304 44 105 chr13 66915924 66916105 -52828793 + MIR SINE MIR 15 184 -78 2339 51 3 10 chr13 66917248 66917543 -52827355 + AluY SINE Alu 1 293 -18 1012 59 7 7 chr13 66917543 66917679 -52827219 + L1PA5 LINE L1 6012 6147 -7 330 340 0 0 chr13 66918137 66918237 -52826661 - MIR SINE MIR -68 140 41 206 385 41 41 chr13 66918912 66919130 -52825768 + L2 LINE L2 2423 2640 -674 453 141 0 0 chr13 66919440 66919525 -52825373 + (TCCA)n Simple_repeat Simple_repeat 2 86 0 21 0 0 0 chr13 66920374 66920395 -52824503 + AT_rich Low_complexity Low_complexity 1 21 0 511 136 0 57 chr13 66921334 66921422 -52823476 - AluS SINE Alu -228 84 2 29 28 0 0 chr13 66921783 66921819 -52823079 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr13 66921854 66921882 -52823016 + AT_rich Low_complexity Low_complexity 1 28 0 1372 217 7 27 chr13 66922774 66923074 -52821824 - AluJo SINE Alu -18 294 1 774 231 10 0 chr13 66924062 66924229 -52820669 + MER5B DNA MER1_type 18 178 0 220 303 11 34 chr13 66927152 66927241 -52817657 - MIR SINE MIR -116 146 60 465 259 99 0 chr13 66928523 66928654 -52816244 - MER63A DNA MER1_type -9 201 58 698 275 17 17 chr13 66929024 66929202 -52815696 - MER5B DNA MER1_type 0 178 1 215 156 44 0 chr13 66929963 66930008 -52814890 + GA-rich Low_complexity Low_complexity 2 48 0 330 229 0 107 chr13 66930062 66930184 -52814714 - MER5A DNA MER1_type -77 112 4 22 70 0 0 chr13 66930475 66930518 -52814380 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 66932278 66932299 -52812599 + AT_rich Low_complexity Low_complexity 1 21 0 206 258 32 0 chr13 66932669 66932731 -52812167 + CT-rich Low_complexity Low_complexity 1 64 0 214 297 77 11 chr13 66933273 66933364 -52811534 - MER5A DNA MER1_type -86 103 7 997 336 119 2 chr13 66933928 66934481 -52810417 + L2 LINE L2 1325 1942 -1372 782 262 173 33 chr13 66934513 66934963 -52809935 + L2 LINE L2 2224 2736 -578 553 185 7 7 chr13 66935895 66936030 -52808868 + GA-rich Low_complexity Low_complexity 4 138 0 35 0 0 0 chr13 66936144 66936179 -52808719 + AT_rich Low_complexity Low_complexity 1 35 0 311 329 65 30 chr13 66937265 66937496 -52807402 + MIR SINE MIR 10 248 -14 770 291 36 20 chr13 66938056 66938307 -52806591 - MIR SINE MIR -1 261 7 2214 116 0 3 chr13 66938441 66938752 -52806146 + AluSx SINE Alu 1 310 -2 1515 176 25 18 chr13 66938800 66939084 -52805814 + AluJb SINE Alu 1 286 -26 29 0 0 0 chr13 66939516 66939545 -52805353 + AT_rich Low_complexity Low_complexity 1 29 0 193 273 106 0 chr13 66941748 66941814 -52803084 + MIR SINE MIR 185 257 -5 622 246 91 32 chr13 66943695 66943882 -52801016 + MIR SINE MIR 17 214 -48 605 296 65 6 chr13 66943979 66944225 -52800673 + MIR SINE MIR 9 262 0 9441 163 9 4 chr13 66944433 66946037 -52798861 + Tigger1 DNA MER2_type 1 1612 -806 266 211 0 0 chr13 66946038 66946090 -52798808 + LTR30 LTR ERV1 1 52 -670 1657 125 69 10 chr13 66946094 66946425 -52798473 + LTR12 LTR ERV1 57 2029 -409 382 211 11 0 chr13 66946425 66946520 -52798378 + LTR30 LTR ERV1 548 643 -79 634 126 0 0 chr13 66946520 66946615 -52798283 + LTR12 LTR ERV1 613 707 -7 5116 124 12 24 chr13 66946618 66947099 -52797799 + Tigger1 DNA MER2_type 1606 2074 -344 5832 51 11 0 chr13 66947099 66947826 -52797072 + L1PA7 LINE L1 5420 6154 0 5116 124 12 24 chr13 66947826 66948165 -52796733 + Tigger1 DNA MER2_type 2074 2416 -2 252 86 0 0 chr13 66948443 66948478 -52796420 + (CA)n Simple_repeat Simple_repeat 2 36 0 394 308 71 28 chr13 66948682 66948864 -52796034 - MLT1L LTR MaLR -78 537 348 3894 130 59 51 chr13 66950198 66950977 -52793921 + LTR1 LTR ERV1 1 785 0 394 279 47 8 chr13 66951270 66951399 -52793499 + MIR SINE MIR 79 212 -50 3912 175 61 28 chr13 66952253 66953260 -52791638 - L1M3 LINE L1 -654 5529 4490 539 275 9 31 chr13 66953271 66953500 -52791398 + L1M4 LINE L1 4838 5061 -1085 202 343 0 0 chr13 66953882 66953955 -52790943 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 3138 184 25 44 chr13 66954729 66955298 -52789600 - MER67C LTR ERV1 0 710 156 183 42 0 0 chr13 66955298 66955322 -52789576 + (TG)n Simple_repeat Simple_repeat 1 24 0 3138 184 25 44 chr13 66955322 66955474 -52789424 - MER67C LTR ERV1 -554 156 3 2538 84 41 0 chr13 66955506 66955905 -52788993 + L1PA10 LINE L1 5789 6201 0 24 32 0 0 chr13 66956426 66956457 -52788441 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr13 66960315 66960345 -52784553 + AT_rich Low_complexity Low_complexity 1 30 0 525 213 0 4 chr13 66961218 66961446 -52783452 - L1MA5A LINE L1 -3 6294 6037 264 167 0 0 chr13 66962176 66962224 -52782674 + (TA)n Simple_repeat Simple_repeat 2 49 0 1475 192 0 8 chr13 66963390 66963678 -52781220 - AluJb SINE Alu 0 310 25 21 0 0 0 chr13 66963711 66963732 -52781166 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr13 66964804 66964829 -52780069 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 1963 138 0 7 chr13 66966936 66967240 -52777658 - AluY SINE Alu -9 302 1 21 36 0 0 chr13 66967343 66967371 -52777527 + AT_rich Low_complexity Low_complexity 1 28 0 1772 146 25 0 chr13 66967912 66968213 -52776685 - AluJb SINE Alu 0 309 2 250 227 40 13 chr13 66969786 66969861 -52775037 - L1MB8 LINE L1 -1 6177 6101 257 348 0 22 chr13 66971195 66971287 -52773611 - MIR SINE MIR -100 108 19 28 79 0 0 chr13 66972870 66972933 -52771965 + AT_rich Low_complexity Low_complexity 1 63 0 695 235 135 5 chr13 66973146 66973346 -52771552 + MLT1J LTR MaLR 286 511 0 2574 118 11 3 chr13 66975361 66975733 -52769165 - THE1C LTR MaLR 0 375 1 265 350 0 0 chr13 66975834 66975914 -52768984 + L2 LINE L2 3189 3268 -4 2240 79 5 0 chr13 66977472 66977756 -52767142 + AluSp SINE Alu 1 285 -28 217 0 0 0 chr13 66977756 66977780 -52767118 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 318 93 70 0 chr13 66978473 66978559 -52766339 + (TA)n Simple_repeat Simple_repeat 1 92 0 444 302 78 16 chr13 66978578 66978833 -52766065 - L1MEc LINE L1 -5417 979 709 368 233 194 16 chr13 66978963 66979121 -52765777 - MLT1J2 LTR MaLR -172 237 67 22 94 0 0 chr13 66979254 66979318 -52765580 + AT_rich Low_complexity Low_complexity 1 64 0 1549 170 10 16 chr13 66980453 66980759 -52764139 + AluJo SINE Alu 1 304 -8 231 304 87 7 chr13 66981927 66982065 -52762833 - MIR SINE MIR -16 246 98 2141 91 0 0 chr13 66982101 66982377 -52762521 + AluY SINE Alu 1 276 -35 1221 70 0 6 chr13 66982479 66982636 -52762262 + THE1B LTR MaLR 209 364 0 3788 128 204 121 chr13 66982845 66984135 -52760763 - pTR5 LTR ERV1 0 2438 172 288 0 0 0 chr13 66986280 66986312 -52758586 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 71 0 0 chr13 66986426 66986468 -52758430 + AT_rich Low_complexity Low_complexity 1 42 0 6275 136 59 37 chr13 66987203 66987612 -52757286 + Tigger3b DNA MER2_type 2 401 -2627 1467 116 27 4 chr13 66987612 66987837 -52757061 + MER30 DNA MER1_type 1 230 0 6275 136 59 37 chr13 66987837 66988630 -52756268 + Tigger3b DNA MER2_type 401 1230 -1 23 54 0 0 chr13 66989481 66989518 -52755380 + AT_rich Low_complexity Low_complexity 1 37 0 257 281 169 11 chr13 66991462 66991551 -52753347 - L2 LINE L2 -28 3285 3183 386 186 290 0 chr13 66991747 66991892 -52753006 - MER53 DNA DNA -2 187 1 25 31 0 0 chr13 66992252 66992284 -52752614 + AT_rich Low_complexity Low_complexity 1 32 0 431 290 105 25 chr13 66992334 66992534 -52752364 + MIR SINE MIR 47 262 0 509 305 26 13 chr13 66993683 66993834 -52751064 - MIR SINE MIR -98 164 12 219 36 0 0 chr13 66994039 66994067 -52750831 + (TATG)n Simple_repeat Simple_repeat 2 29 0 240 289 42 14 chr13 66994468 66994610 -52750288 - L1MC5 LINE L1 -33 7928 7783 183 100 0 0 chr13 66994614 66994644 -52750254 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 301 297 53 56 chr13 66994670 66994936 -52749962 - L1MC5 LINE L1 -284 7677 7413 21 57 0 0 chr13 66994940 66994975 -52749923 + AT_rich Low_complexity Low_complexity 1 35 0 235 231 0 0 chr13 66995905 66995957 -52748941 + L2 LINE L2 3262 3313 0 235 110 37 24 chr13 66997124 66997206 -52747692 + (TA)n Simple_repeat Simple_repeat 1 83 0 325 231 73 62 chr13 66997525 66997690 -52747208 - MLT1K LTR MaLR -313 302 150 303 28 0 0 chr13 66998218 66998254 -52746644 + (CA)n Simple_repeat Simple_repeat 1 36 0 964 101 0 0 chr13 66999518 66999656 -52745242 + L1PA6 LINE L1 6014 6151 -3 1637 170 35 3 chr13 67000028 67000310 -52744588 + AluJo SINE Alu 1 291 -21 28 0 0 0 chr13 67000664 67000692 -52744206 + AT_rich Low_complexity Low_complexity 1 28 0 331 224 90 45 chr13 67000728 67000884 -52744014 - L1P LINE L1 -1100 5046 4884 1034 188 0 0 chr13 67002983 67003153 -52741745 - AluJo/FRAM SINE Alu -9 303 134 1714 162 0 64 chr13 67003153 67003480 -52741418 - AluJb SINE Alu -6 306 1 328 194 16 3 chr13 67003595 67003671 -52741227 + AluS SINE Alu 1 60 -243 181 328 0 0 chr13 67004946 67005010 -52739888 - MIR SINE MIR 0 262 199 186 71 0 0 chr13 67005021 67005049 -52739849 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 622 173 5 0 chr13 67005119 67005293 -52739605 - L1MA6 LINE L1 -424 5876 5615 2081 175 70 2 chr13 67005444 67005843 -52739055 - MSTB LTR MaLR 0 426 1 198 273 91 0 chr13 67007162 67007239 -52737659 - MIR SINE MIR -91 171 88 192 200 0 0 chr13 67007407 67007447 -52737451 + (CA)n Simple_repeat Simple_repeat 1 40 0 241 237 34 0 chr13 67008147 67008206 -52736692 + T-rich Low_complexity Low_complexity 2 62 0 534 355 85 37 chr13 67008856 67009382 -52735516 + L2 LINE L2 1152 1716 -1598 257 26 0 51 chr13 67009382 67009421 -52735477 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 534 355 85 37 chr13 67009421 67009539 -52735359 + L2 LINE L2 1716 1827 -1487 214 391 9 43 chr13 67009846 67009961 -52734937 + L2 LINE L2 3142 3252 -20 303 49 0 0 chr13 67010360 67010401 -52734497 + (TC)n Simple_repeat Simple_repeat 2 42 0 2054 130 0 0 chr13 67011588 67011873 -52733025 + AluSx SINE Alu 1 285 -27 219 264 110 0 chr13 67015587 67015678 -52729220 + MIR3 SINE MIR 103 203 -5 1444 189 0 55 chr13 67015689 67015996 -52728902 - AluJo SINE Alu -9 303 14 1122 131 63 0 chr13 67016244 67016435 -52728463 - AluSc SINE Alu -7 302 100 25 51 0 0 chr13 67017087 67017126 -52727772 + AT_rich Low_complexity Low_complexity 1 39 0 1491 206 48 20 chr13 67017983 67018338 -52726560 - MLT1A1 LTR MaLR 0 365 1 1821 162 6 19 chr13 67018959 67019274 -52725624 - AluJb SINE Alu 0 312 2 1010 258 72 70 chr13 67020442 67020899 -52723999 - MLT1C LTR MaLR -9 458 1 1816 207 11 5 chr13 67021379 67021741 -52723157 + MLT2C1 LTR ERVL 1 480 -40 311 214 31 51 chr13 67021776 67021874 -52723024 - L1MC4 LINE L1 -1337 6705 6610 23 33 0 0 chr13 67021875 67021905 -52722993 + AT_rich Low_complexity Low_complexity 1 30 0 269 130 0 0 chr13 67021905 67021951 -52722947 + MLT2C1 LTR ERVL 465 510 -10 2089 100 14 7 chr13 67022389 67022679 -52722219 + AluSg SINE Alu 1 292 -18 1263 210 137 91 chr13 67023523 67024059 -52720839 - MER66A LTR ERV1 0 478 110 6443 162 21 21 chr13 67024609 67024899 -52719999 + Tigger3b DNA MER2_type 1 290 -2738 2117 97 17 13 chr13 67024899 67025238 -52719660 - AluY SINE Alu 0 340 1 6443 162 21 21 chr13 67025238 67026176 -52718722 + Tigger3b DNA MER2_type 289 1231 0 212 160 66 0 chr13 67026947 67027053 -52717845 + (TTATA)n Simple_repeat Simple_repeat 1 113 0 402 324 28 16 chr13 67027943 67028125 -52716773 + MIR SINE MIR 79 262 0 544 282 83 66 chr13 67028272 67028454 -52716444 + MIR3 SINE MIR 54 237 0 21 0 0 0 chr13 67030659 67030680 -52714218 + AT_rich Low_complexity Low_complexity 1 21 0 25 102 0 0 chr13 67031204 67031292 -52713606 + AT_rich Low_complexity Low_complexity 1 88 0 27 29 0 0 chr13 67031590 67031624 -52713274 + AT_rich Low_complexity Low_complexity 1 34 0 1126 30 0 0 chr13 67031850 67031985 -52712913 - AluYa5/8 SINE Alu -1 309 175 224 268 92 56 chr13 67031997 67032139 -52712759 - MIR SINE MIR 0 262 116 249 183 0 0 chr13 67032150 67032210 -52712688 + GA-rich Low_complexity Low_complexity 2 61 0 24 0 0 0 chr13 67033096 67033120 -52711778 + AT_rich Low_complexity Low_complexity 1 24 0 310 286 11 11 chr13 67033699 67033790 -52711108 - MIR SINE MIR 0 262 172 27 87 0 0 chr13 67038329 67038398 -52706500 + AT_rich Low_complexity Low_complexity 1 69 0 24 32 0 0 chr13 67038859 67038890 -52706008 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr13 67039547 67039583 -52705315 + AT_rich Low_complexity Low_complexity 1 36 0 269 372 97 5 chr13 67040076 67040272 -52704626 - L2 LINE L2 -224 3048 2835 240 330 51 17 chr13 67040360 67040478 -52704420 - L2 LINE L2 -808 2506 2385 2026 137 0 0 chr13 67040609 67040902 -52703996 - AluSq SINE Alu -20 293 1 218 317 89 32 chr13 67092013 67092136 -52652762 + L2 LINE L2 3184 3313 0 1125 229 83 60 chr13 67092252 67092566 -52652332 + MLT1E LTR MaLR 1 321 -272 258 350 153 6 chr13 67092683 67092846 -52652052 + MIR3 SINE MIR 16 202 -6 6362 133 205 20 chr13 67092927 67094359 -52650539 + pTR5 LTR ERV1 741 2438 0 198 330 121 80 chr13 67094524 67094593 -52650305 + MIR SINE MIR 20 85 -177 1427 219 3 10 chr13 67094593 67094899 -52649999 - AluJo SINE Alu -5 307 4 198 330 121 80 chr13 67094899 67095053 -52649845 + MIR SINE MIR 85 252 -10 297 282 75 34 chr13 67096101 67096367 -52648531 - L1MC5 LINE L1 -48 7913 7637 264 291 113 7 chr13 67096450 67096591 -52648307 + L1MC5 LINE L1 6960 7115 -846 2018 136 0 10 chr13 67096825 67097127 -52647771 - AluSx SINE Alu -13 299 1 333 0 0 0 chr13 67098115 67098152 -52646746 + (TG)n Simple_repeat Simple_repeat 2 38 0 770 187 7 0 chr13 67099690 67099829 -52645069 - FRAM SINE Alu -37 139 1 731 165 0 0 chr13 67101373 67101494 -52643404 - L1MC1 LINE L1 -13 6320 6200 23 0 0 0 chr13 67101564 67101587 -52643311 + AT_rich Low_complexity Low_complexity 1 23 0 276 164 18 0 chr13 67101884 67101939 -52642959 - U7 snRNA snRNA -6 57 2 387 245 54 34 chr13 67102044 67102191 -52642707 + MER104 DNA Tc2 1 150 -30 2177 99 0 3 chr13 67103051 67103358 -52641540 - AluSq SINE Alu 0 306 1 25 0 0 0 chr13 67104018 67104043 -52640855 + AT_rich Low_complexity Low_complexity 1 25 0 200 211 0 0 chr13 67105082 67105120 -52639778 - L2 LINE L2 -12 3301 3264 207 152 0 0 chr13 67107873 67107919 -52636979 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 203 133 0 0 chr13 67107925 67107955 -52636943 + (CA)n Simple_repeat Simple_repeat 2 31 0 2225 97 0 3 chr13 67108795 67109095 -52635803 + AluY SINE Alu 1 299 -12 299 326 11 11 chr13 67109235 67109327 -52635571 - L2 LINE L2 0 3272 3181 279 0 0 0 chr13 67111694 67111725 -52633173 + (CA)n Simple_repeat Simple_repeat 2 32 0 1552 115 17 17 chr13 67112043 67112277 -52632621 - AluSg/x SINE Alu -13 299 66 234 197 49 0 chr13 67112874 67112935 -52631963 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 204 227 0 0 chr13 67113230 67113274 -52631624 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 306 252 150 27 chr13 67113955 67114102 -52630796 - MARNA DNA Mariner -414 172 8 837 209 35 10 chr13 67115401 67115602 -52629296 + L1MC2 LINE L1 6114 6319 -25 21 36 0 0 chr13 67115977 67116005 -52628893 + AT_rich Low_complexity Low_complexity 1 28 0 292 397 30 8 chr13 67116854 67116985 -52627913 - L2 LINE L2 -2 3270 3137 275 290 112 9 chr13 67117556 67117663 -52627235 + L2 LINE L2 3191 3308 -5 22901 154 22 19 chr13 67117790 67124850 -52620048 + L1MA3 LINE L1 12 7102 -622 2354 77 0 10 chr13 67124850 67125161 -52619737 + AluY SINE Alu 2 309 -2 22901 154 22 19 chr13 67125161 67125787 -52619111 + L1MA3 LINE L1 7102 7724 0 203 30 0 61 chr13 67125854 67125887 -52619011 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1414 176 3 71 chr13 67125889 67126185 -52618713 - AluJb SINE Alu -32 280 5 26 0 0 0 chr13 67126191 67126217 -52618681 + AT_rich Low_complexity Low_complexity 1 26 0 38 0 0 0 chr13 67126527 67126565 -52618333 + AT_rich Low_complexity Low_complexity 1 38 0 952 186 30 13 chr13 67129031 67129319 -52615579 - MER2 DNA MER2_type 0 345 22 225 269 29 48 chr13 67129851 67129955 -52614943 + HsTC2 DNA Tc2 1790 1891 -7 192 337 104 31 chr13 67129989 67130182 -52614716 - MIR SINE MIR -6 256 50 272 220 22 88 chr13 67130357 67130448 -52614450 + L2 LINE L2 3183 3267 -46 309 89 0 0 chr13 67133197 67133242 -52611656 + (TG)n Simple_repeat Simple_repeat 2 46 0 2266 101 0 0 chr13 67133354 67133651 -52611247 + AluSp SINE Alu 1 297 -16 2072 116 30 0 chr13 67136259 67136561 -52608337 - AluSq SINE Alu -2 311 1 200 331 39 39 chr13 67136606 67136733 -52608165 + L2 LINE L2 2928 3054 -218 21 0 0 0 chr13 67136902 67136923 -52607975 + AT_rich Low_complexity Low_complexity 1 21 0 201 264 19 0 chr13 67138365 67138418 -52606480 + GA-rich Low_complexity Low_complexity 1 54 0 205 176 15 59 chr13 67139648 67139716 -52605182 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 21 71 0 0 chr13 67141032 67141074 -52603824 + AT_rich Low_complexity Low_complexity 1 42 0 369 277 106 53 chr13 67141143 67141425 -52603473 + L2 LINE L2 3008 3304 -9 631 171 130 14 chr13 67141928 67142074 -52602824 + MLT1C LTR MaLR 1 163 -227 207 0 0 0 chr13 67142076 67142099 -52602799 + (A)n Simple_repeat Simple_repeat 1 23 0 2227 128 37 3 chr13 67142109 67142461 -52602437 + THE1B LTR MaLR 1 364 0 9537 95 8 131 chr13 67142469 67144244 -52600654 + THE1B-int LTR MaLR 15 1570 -10 2334 126 5 32 chr13 67144253 67144627 -52600271 + THE1B LTR MaLR 1 364 0 843 222 62 45 chr13 67144627 67144905 -52599993 + MLT1C LTR MaLR 182 467 0 25 31 0 0 chr13 67145201 67145233 -52599665 + AT_rich Low_complexity Low_complexity 1 32 0 197 259 74 0 chr13 67146241 67146295 -52598603 + MIR SINE MIR 84 141 -121 25 0 0 0 chr13 67146500 67146525 -52598373 + AT_rich Low_complexity Low_complexity 1 25 0 189 338 183 7 chr13 67146764 67146906 -52597992 + MIR SINE MIR 93 259 -3 24 0 0 0 chr13 67148083 67148107 -52596791 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr13 67148467 67148498 -52596400 + AT_rich Low_complexity Low_complexity 1 31 0 2034 166 53 69 chr13 67148591 67149026 -52595872 + MSTA LTR MaLR 1 428 0 190 275 0 58 chr13 67149668 67149737 -52595161 - MIR SINE MIR -100 162 98 205 136 23 45 chr13 67149774 67149818 -52595080 - MIR SINE MIR -36 226 184 21 36 0 0 chr13 67150210 67150238 -52594660 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chr13 67151601 67151650 -52593248 + AT_rich Low_complexity Low_complexity 1 49 0 206 325 75 58 chr13 67152583 67152823 -52592075 + L2 LINE L2 2719 2962 -352 224 300 29 0 chr13 67152982 67153052 -52591846 + L2 LINE L2 3234 3305 -8 186 103 0 0 chr13 67153103 67153132 -52591766 + (TA)n Simple_repeat Simple_repeat 1 29 0 641 202 55 22 chr13 67153291 67153474 -52591424 - MER106A DNA MER1_type -15 221 33 457 16 32 0 chr13 67153509 67153571 -52591327 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 381 300 83 39 chr13 67154700 67154930 -52589968 - MIR SINE MIR -21 241 2 2273 126 29 27 chr13 67155541 67155915 -52588983 + THE1C LTR MaLR 1 375 0 1162 153 42 0 chr13 67155915 67156130 -52588768 + THE1C-int LTR MaLR 1 224 -1356 * 7322 134 27 6 chr13 67156118 67157270 -52587628 + THE1C-int LTR MaLR 405 1580 0 2464 109 16 21 chr13 67157270 67157647 -52587251 + THE1C LTR MaLR 1 375 0 1781 156 3 3 chr13 67162190 67162501 -52582397 - AluSx SINE Alu 0 311 1 21 0 0 0 chr13 67164687 67164708 -52580190 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr13 67165804 67165852 -52579046 + AT_rich Low_complexity Low_complexity 1 48 0 252 182 30 15 chr13 67165866 67165932 -52578966 + (TA)n Simple_repeat Simple_repeat 2 68 0 183 250 0 21 chr13 67165982 67166030 -52578868 + L2 LINE L2 3267 3313 0 2437 54 0 0 chr13 67166069 67166364 -52578534 - AluY SINE Alu -14 297 3 251 242 30 0 chr13 67166772 67166838 -52578060 + LTR50 LTR ERVL 720 787 -8 198 0 0 0 chr13 67167947 67167969 -52576929 + (T)n Simple_repeat Simple_repeat 1 22 0 1622 185 18 4 chr13 67167985 67168266 -52576632 + AluJo SINE Alu 3 287 -25 23 68 0 0 chr13 67168266 67168310 -52576588 + AT_rich Low_complexity Low_complexity 1 44 0 871 203 8 100 chr13 67168702 67168870 -52576028 - MER20 DNA MER1_type 0 219 78 3169 178 12 0 chr13 67168870 67169471 -52575427 + L1MB3 LINE L1 5575 6182 -1 871 203 8 100 chr13 67169471 67169543 -52575355 - MER20 DNA MER1_type -141 78 1 195 42 0 0 chr13 67169731 67169755 -52575143 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 1452 184 3 31 chr13 67169757 67170050 -52574848 - AluJo SINE Alu -27 285 1 2084 129 3 22 chr13 67170059 67170377 -52574521 - AluSx SINE Alu 0 312 1 1241 245 41 58 chr13 67170500 67170962 -52573936 + MLT1C LTR MaLR 13 466 -1 23 33 0 0 chr13 67171010 67171040 -52573858 + AT_rich Low_complexity Low_complexity 1 30 0 534 98 0 0 chr13 67172052 67172134 -52572764 + (TA)n Simple_repeat Simple_repeat 1 82 0 241 277 0 43 chr13 67172506 67172600 -52572298 + L1MC4 LINE L1 6614 6703 -1339 217 319 113 25 chr13 67172974 67173134 -52571764 - MIR SINE MIR -12 250 77 21 0 0 0 chr13 67173353 67173374 -52571524 + AT_rich Low_complexity Low_complexity 1 21 0 1888 165 22 53 chr13 67173501 67173914 -52570984 + L1MA9 LINE L1 5913 6312 0 265 308 0 0 chr13 67174127 67174205 -52570693 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 1597 155 13 36 chr13 67174780 67175084 -52569814 + AluJb SINE Alu 2 298 -14 465 330 24 15 chr13 67177480 67177686 -52567212 + MIR SINE MIR 37 244 -18 2587 3 0 0 chr13 67179194 67179512 -52565386 - AluYa5 SINE Alu 0 318 1 1510 255 24 26 chr13 67181747 67182245 -52562653 - MLT1D LTR MaLR -7 498 2 243 219 31 0 chr13 67182291 67182355 -52562543 + L1ME LINE L1 5743 5808 -362 29 0 0 0 chr13 67184479 67184508 -52560390 + AT_rich Low_complexity Low_complexity 1 29 0 337 167 12 12 chr13 67184733 67184817 -52560081 + (TA)n Simple_repeat Simple_repeat 1 84 0 693 192 19 64 chr13 67184832 67184988 -52559910 + Tigger2a DNA MER2_type 1 149 -285 2348 86 3 0 chr13 67185347 67185648 -52559250 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 67185711 67185739 -52559159 + AT_rich Low_complexity Low_complexity 1 28 0 617 171 50 166 chr13 67187942 67188141 -52556757 + MER69 DNA AcHobo 1 2525 -1 26 50 0 0 chr13 67188226 67188266 -52556632 + AT_rich Low_complexity Low_complexity 1 40 0 2275 98 13 0 chr13 67188337 67188644 -52556254 + AluSx SINE Alu 1 311 -1 327 49 0 0 chr13 67188644 67188685 -52556213 + (TA)n Simple_repeat Simple_repeat 1 41 0 229 366 20 10 chr13 67190315 67190416 -52554482 + MIR SINE MIR 33 134 -128 1516 230 22 11 chr13 67190448 67190804 -52554094 + MLT1A1 LTR MaLR 1 360 -5 1971 116 22 53 chr13 67191308 67191626 -52553272 - AluSx SINE Alu -4 308 1 416 254 8 8 chr13 67192468 67192594 -52552304 - MER103 DNA DNA -10 156 31 383 261 64 57 chr13 67193511 67193668 -52551230 - MIR SINE MIR -95 167 10 2313 90 0 0 chr13 67193850 67194150 -52550748 + AluSx SINE Alu 2 301 -11 272 219 0 0 chr13 67195658 67195722 -52549176 + MER89 LTR ERV1 3 66 -493 1381 208 55 55 chr13 67195727 67196106 -52548792 + MER89 LTR ERV1 180 558 -1 1224 298 147 12 chr13 67196118 67196688 -52548210 + L2 LINE L2 2205 2851 -463 743 266 68 25 chr13 67196767 67197090 -52547808 - LTR37A LTR ERV1 0 426 90 318 98 20 0 chr13 67197129 67197180 -52547718 - MADE1 DNA Mariner -27 53 2 1268 208 29 39 chr13 67198141 67198453 -52546445 + AluJo SINE Alu 1 309 -3 25 0 0 0 chr13 67198709 67198734 -52546164 + AT_rich Low_complexity Low_complexity 1 25 0 371 373 103 35 chr13 67199087 67199398 -52545500 - L3 LINE CR1 -130 1447 1116 369 290 48 102 chr13 67200147 67200481 -52544417 + L2 LINE L2 2207 2522 -792 217 358 60 45 chr13 67200598 67200799 -52544099 + L2 LINE L2 2686 2889 -425 285 351 41 77 chr13 67200838 67201177 -52543721 + L2 LINE L2 2943 3269 -3 249 405 63 42 chr13 67201545 67201829 -52543069 + L2 LINE L2 2958 3247 -25 953 210 6 0 chr13 67201840 67202021 -52542877 - AluJ SINE Alu -10 302 121 646 194 16 8 chr13 67202055 67202184 -52542714 - AluJ SINE Alu -170 132 3 181 346 146 27 chr13 67202252 67202437 -52542461 + L3b LINE CR1 1236 1442 -141 29 0 0 0 chr13 67203268 67203297 -52541601 + AT_rich Low_complexity Low_complexity 1 29 0 980 175 60 5 chr13 67203303 67203520 -52541378 - L1MA4 LINE L1 -12 6288 6060 1101 285 150 23 chr13 67205264 67205735 -52539163 + MER77 LTR ERV1 177 767 -8 2250 112 0 0 chr13 67206845 67207139 -52537759 + AluSx SINE Alu 1 294 -18 1532 169 26 98 chr13 67207338 67207757 -52537141 + MLT1B LTR MaLR 2 390 0 42527 32 22 1 chr13 67208646 67214671 -52530227 + L1PA2 LINE L1 1 6155 0 1583 141 32 0 chr13 67214671 67214947 -52529951 + L1MA8 LINE L1 6001 6286 -5 37 23 0 0 chr13 67214955 67214999 -52529899 + AT_rich Low_complexity Low_complexity 1 44 0 213 369 0 15 chr13 67215056 67215121 -52529777 - L2 LINE L2 -86 3186 3123 25 0 0 0 chr13 67215574 67215599 -52529299 + AT_rich Low_complexity Low_complexity 1 25 0 589 346 43 0 chr13 67216140 67216371 -52528527 + MIR SINE MIR 22 262 0 21 0 0 0 chr13 67216838 67216859 -52528039 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr13 67217661 67217687 -52527211 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2057 115 0 7 chr13 67218233 67218566 -52526332 + AluSg SINE Alu 1 310 0 221 281 0 0 chr13 67218776 67218833 -52526065 + (TA)n Simple_repeat Simple_repeat 1 57 0 2019 144 38 19 chr13 67219983 67220351 -52524547 + THE1C LTR MaLR 1 375 0 277 286 281 20 chr13 67220553 67220752 -52524146 - MIR SINE MIR -1 261 11 352 204 0 23 chr13 67221042 67221130 -52523768 + L1MA8 LINE L1 6202 6287 -4 200 206 0 0 chr13 67221239 67221273 -52523625 + (CA)n Simple_repeat Simple_repeat 1 34 0 488 270 70 25 chr13 67222787 67222987 -52521911 + MER3 DNA MER1_type 1 209 0 313 341 172 16 chr13 67223007 67223444 -52521454 - L2 LINE L2 -43 3270 2771 24 32 0 0 chr13 67223470 67223501 -52521397 + AT_rich Low_complexity Low_complexity 1 31 0 1509 181 0 0 chr13 67223512 67223760 -52521138 - AluJb SINE Alu -64 248 1 197 410 8 8 chr13 67223764 67223898 -52521000 - L2 LINE L2 -567 2747 2614 345 322 117 0 chr13 67224037 67224217 -52520681 - L2 LINE L2 -906 2408 2208 1101 177 84 0 chr13 67224416 67224653 -52520245 + L1MA5A LINE L1 6035 6291 -6 23 54 0 0 chr13 67225207 67225244 -52519654 + AT_rich Low_complexity Low_complexity 1 37 0 1950 73 0 22 chr13 67225281 67225553 -52519345 + L1PA7 LINE L1 5887 6152 -2 311 224 163 0 chr13 67226373 67226471 -52518427 - MIR SINE MIR -73 189 76 192 361 56 37 chr13 67226470 67226578 -52518320 + L2 LINE L2 3151 3260 -12 * 275 301 88 7 chr13 67227858 67227994 -52516904 + MLT1J LTR MaLR 8 154 -357 2079 103 0 7 chr13 67228009 67228290 -52516608 - AluSx SINE Alu -23 289 11 234 319 56 0 chr13 67228365 67228437 -52516461 + MLT1J1 LTR MaLR 238 313 -133 1372 187 64 26 chr13 67229241 67229584 -52515314 - L1MA8 LINE L1 -3 6288 5933 505 86 49 0 chr13 67229591 67229672 -52515226 - L1MA6 LINE L1 0 7719 7635 2273 225 26 8 chr13 67229683 67230297 -52514601 - L1MA6 LINE L1 -215 7504 4548 1413 227 24 34 chr13 67230298 67231522 -52513376 - L1MA6 LINE L1 -3646 3919 2643 4384 155 22 33 chr13 67231529 67232521 -52512377 + MER11C LTR ERVK 1 1071 0 1576 272 49 44 chr13 67232529 67233881 -52511017 - L1M3c LINE L1 -4521 2516 11 21 0 0 0 chr13 67234028 67234049 -52510849 + AT_rich Low_complexity Low_complexity 1 21 0 709 224 35 0 chr13 67234130 67234273 -52510625 - FAM SINE Alu -17 168 21 26 64 0 0 chr13 67234327 67234374 -52510524 + AT_rich Low_complexity Low_complexity 1 47 0 1973 150 0 10 chr13 67234955 67235262 -52509636 - AluSx SINE Alu -8 304 1 257 176 57 45 chr13 67236161 67236337 -52508561 - HERV17 LTR ERV1 -7774 852 675 269 306 0 12 chr13 67237743 67237828 -52507070 + GA-rich Low_complexity Low_complexity 2 85 0 26 50 0 0 chr13 67238172 67238212 -52506686 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr13 67239472 67239500 -52505398 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr13 67240003 67240037 -52504861 + AT_rich Low_complexity Low_complexity 1 34 0 252 276 0 46 chr13 67240908 67240995 -52503903 - MIR3 SINE MIR -5 203 121 1005 107 7 0 chr13 67241382 67241532 -52503366 + L1PB2 LINE L1 6000 6150 -1 430 373 37 13 chr13 67241653 67241953 -52502945 + LTR33 LTR ERVL 44 350 -171 192 264 11 46 chr13 67241959 67242046 -52502852 + L2 LINE L2 2646 2729 -585 248 275 0 43 chr13 67242086 67242155 -52502743 + L2 LINE L2 2965 3030 -242 899 223 0 0 chr13 67242244 67242410 -52502488 - FAM SINE Alu -9 166 1 194 173 0 19 chr13 67242483 67242535 -52502363 + CT-rich Low_complexity Low_complexity 2 52 0 242 241 56 83 chr13 67242605 67242713 -52502185 - L2 LINE L2 -93 3220 3116 384 319 44 40 chr13 67242805 67243031 -52501867 + MIR SINE MIR 2 228 -34 24 0 0 0 chr13 67243845 67243869 -52501029 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr13 67243926 67243951 -52500947 + AT_rich Low_complexity Low_complexity 1 25 0 761 152 4 161 chr13 67244343 67244510 -52500388 + MER3 DNA MER1_type 1 120 -89 2314 77 3 10 chr13 67244510 67244823 -52500075 + AluY SINE Alu 1 311 0 761 152 4 161 chr13 67244823 67244898 -52500000 + MER3 DNA MER1_type 120 205 -4 2318 86 3 0 chr13 67244940 67245241 -52499657 - AluSq SINE Alu -11 302 1 185 250 0 0 chr13 67245554 67245598 -52499300 - L2 LINE L2 -1684 1630 1587 478 259 23 8 chr13 67246443 67246574 -52498324 + MER94 DNA DNA 1 133 -1 2162 171 40 28 chr13 67246600 67247026 -52497872 + Tigger2a DNA MER2_type 4 434 0 11951 27 0 1 chr13 67247276 67249465 -52495433 + L1PA3 LINE L1 3974 6161 0 279 329 162 6 chr13 67249800 67249967 -52494931 - MIR SINE MIR -24 238 46 2195 245 21 33 chr13 67250376 67250704 -52494194 + L1MA9 LINE L1 5625 5955 -357 2194 84 0 0 chr13 67250704 67250978 -52493920 + AluSc SINE Alu 1 274 -35 315 0 0 0 chr13 67250979 67251014 -52493884 + (TC)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr13 67251013 67251038 -52493860 + (TA)n Simple_repeat Simple_repeat 1 25 0 2195 245 21 33 chr13 67251014 67251037 -52493861 + L1MA9 LINE L1 5955 5977 -335 261 0 0 0 chr13 67251037 67251066 -52493832 + (TG)n Simple_repeat Simple_repeat 2 30 0 2195 245 21 33 chr13 67251066 67251393 -52493505 + L1MA9 LINE L1 5977 6274 -38 25 0 0 0 chr13 67251451 67251476 -52493422 + AT_rich Low_complexity Low_complexity 1 25 0 693 297 68 73 chr13 67251611 67252035 -52492863 + L2 LINE L2 2892 3313 0 30 0 0 0 chr13 67252334 67252364 -52492534 + AT_rich Low_complexity Low_complexity 1 30 0 809 220 75 51 chr13 67253585 67253880 -52491018 + MER33 DNA MER1_type 1 302 -22 685 324 50 40 chr13 67255267 67255764 -52489134 + MLT1J LTR MaLR 8 509 -2 21 0 0 0 chr13 67255945 67255966 -52488932 + AT_rich Low_complexity Low_complexity 1 21 0 2115 134 0 0 chr13 67258497 67258802 -52486096 + AluSx SINE Alu 1 305 -7 834 214 159 43 chr13 67259219 67259546 -52485352 - MLT1A1 LTR MaLR 0 365 1 203 347 66 8 chr13 67259547 67259668 -52485230 + MIR SINE MIR 86 213 -49 225 0 0 0 chr13 67259812 67259837 -52485061 + (T)n Simple_repeat Simple_repeat 1 25 0 189 132 0 0 chr13 67259875 67259913 -52484985 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 201 339 54 0 chr13 67260393 67260449 -52484449 - MIR SINE MIR -189 73 15 22 0 0 0 chr13 67260662 67260684 -52484214 + AT_rich Low_complexity Low_complexity 1 22 0 467 344 39 22 chr13 67260805 67261035 -52483863 + L2 LINE L2 3062 3295 -18 403 288 104 45 chr13 67261192 67261857 -52483041 - L1MC/D LINE L1 -748 5585 4875 379 113 28 42 chr13 67262642 67262713 -52482185 + MADE1 DNA Mariner 1 70 -10 256 79 0 0 chr13 67262692 67262730 -52482168 - MADE1 DNA Mariner -12 68 31 * 349 154 0 15 chr13 67262860 67262925 -52481973 + MADE1 DNA Mariner 17 80 0 1879 156 3 0 chr13 67263551 67263852 -52481046 + AluSq SINE Alu 1 302 -11 210 156 0 0 chr13 67264266 67264311 -52480587 + (TA)n Simple_repeat Simple_repeat 2 46 0 292 149 15 15 chr13 67265394 67265461 -52479437 + GA-rich Low_complexity Low_complexity 4 70 0 279 54 0 0 chr13 67266130 67266167 -52478731 + (CA)n Simple_repeat Simple_repeat 2 38 0 1133 184 21 13 chr13 67266290 67266523 -52478375 - MER46A DNA MER2_type 0 236 2 289 320 248 0 chr13 67267819 67267944 -52476954 - L2 LINE L2 0 3272 3117 216 0 0 0 chr13 67269124 67269148 -52475750 + (TG)n Simple_repeat Simple_repeat 2 25 0 303 290 0 28 chr13 67269148 67269255 -52475643 + GA-rich Low_complexity Low_complexity 2 105 0 1832 149 7 17 chr13 67269981 67270282 -52474616 - AluSx SINE Alu -14 298 1 506 337 60 51 chr13 67270899 67271746 -52473152 + L2 LINE L2 2399 3289 -24 613 241 19 19 chr13 67271954 67272116 -52472782 + MIR SINE MIR 101 262 0 231 303 98 61 chr13 67272206 67272338 -52472560 + L2 LINE L2 3177 3313 0 315 49 0 0 chr13 67273152 67273193 -52471705 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 26 64 0 0 chr13 67273841 67273888 -52471010 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr13 67275594 67275616 -52469282 + AT_rich Low_complexity Low_complexity 1 22 0 318 292 100 8 chr13 67275990 67276110 -52468788 + MER94 DNA DNA 2 132 -2 221 367 20 0 chr13 67276650 67276797 -52468101 - MIR3 SINE MIR -6 202 53 273 305 144 17 chr13 67277788 67277962 -52466936 + MIR SINE MIR 48 243 -19 443 236 163 5 chr13 67278629 67278819 -52466079 + MIR SINE MIR 33 258 -4 23 68 0 0 chr13 67278820 67278864 -52466034 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr13 67279580 67279624 -52465274 + AT_rich Low_complexity Low_complexity 1 44 0 339 317 150 24 chr13 67279912 67280079 -52464819 + MER5A DNA MER1_type 1 188 -1 2353 61 0 3 chr13 67280115 67280411 -52464487 - AluY SINE Alu -16 295 1 310 281 72 50 chr13 67280851 67280990 -52463908 + L2 LINE L2 3171 3312 -1 258 155 69 0 chr13 67281336 67281394 -52463504 - L1ME LINE L1 -5471 599 538 732 282 52 74 chr13 67281574 67282116 -52462782 - L1ME LINE L1 -5539 531 2 1521 209 38 20 chr13 67283082 67283475 -52461423 - Charlie4a DNA MER1_type -17 491 92 1359 134 0 0 chr13 67284881 67285082 -52459816 + AluSg/x SINE Alu 100 300 -12 609 251 31 25 chr13 67285206 67285369 -52459529 - L2 LINE L2 0 3313 3150 273 362 26 26 chr13 67286435 67286551 -52458347 + MIR3 SINE MIR 13 128 -80 385 289 0 0 chr13 67286647 67286723 -52458175 + MIR3 SINE MIR 114 189 -19 261 283 29 87 chr13 67286936 67287074 -52457824 - MLT1H LTR MaLR -198 351 222 733 155 14 7 chr13 67287097 67287245 -52457653 + CT-rich Low_complexity Low_complexity 3 151 0 1022 221 0 9 chr13 67287602 67287819 -52457079 + AluJb SINE Alu 98 312 0 381 324 77 12 chr13 67287880 67288050 -52456848 + L3 LINE CR1 1051 1231 -346 26 19 6 0 chr13 67288422 67288487 -52456411 + AT_rich Low_complexity Low_complexity 1 33 0 5422 123 18 19 chr13 67288887 67289995 -52454903 + L1PA15 LINE L1 5053 6159 -6 225 342 165 6 chr13 67290152 67290310 -52454588 - MIR SINE MIR -14 248 66 1016 149 7 0 chr13 67290707 67290861 -52454037 + AluSg SINE Alu 1 155 -155 620 203 116 43 chr13 67290992 67291199 -52453699 - MER2 DNA MER2_type -1 344 123 396 305 90 18 chr13 67291374 67291541 -52453357 + MIR SINE MIR 41 219 -43 207 0 0 0 chr13 67292574 67292597 -52452301 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 441 106 0 32 chr13 67292602 67292696 -52452202 + (CCTG)n Simple_repeat Simple_repeat 2 92 0 529 183 8 8 chr13 67292722 67292842 -52452056 + CT-rich Low_complexity Low_complexity 2 121 0 24 0 0 0 chr13 67292906 67292930 -52451968 + AT_rich Low_complexity Low_complexity 1 24 0 993 194 0 10 chr13 67292930 67293131 -52451767 - L1PB1 LINE L1 0 6151 5953 182 308 58 0 chr13 67294377 67294429 -52450469 + L2 LINE L2 3259 3313 0 602 161 0 8 chr13 67294441 67294559 -52450339 + GA-rich Low_complexity Low_complexity 4 120 0 4402 98 24 2 chr13 67295638 67296271 -52448627 - L1PA13 LINE L1 -3 6160 5514 1512 187 0 26 chr13 67296721 67297031 -52447867 - AluJo SINE Alu -8 304 3 2470 48 0 10 chr13 67297676 67297990 -52446908 - AluY SINE Alu 0 311 1 278 289 202 35 chr13 67299496 67299669 -52445229 + MIR SINE MIR 50 251 -11 3000 215 40 7 chr13 67300227 67300845 -52444053 + MER82 DNA MER2_type 10 648 -5 22 0 0 0 chr13 67300886 67300908 -52443990 + AT_rich Low_complexity Low_complexity 1 22 0 298 301 111 28 chr13 67300927 67301104 -52443794 - MIR SINE MIR -17 191 3 703 209 0 8 chr13 67301368 67301502 -52443396 + FLAM_A SINE Alu 1 133 0 312 91 0 0 chr13 67302005 67302049 -52442849 + (TTA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chr13 67302140 67302163 -52442735 + AT_rich Low_complexity Low_complexity 1 23 0 426 250 14 88 chr13 67302290 67302438 -52442460 - MER5A DNA MER1_type -7 182 46 197 169 99 42 chr13 67302678 67302749 -52442149 + MIR SINE MIR 86 160 -102 237 132 0 0 chr13 67302983 67303021 -52441877 + (CAT)n Simple_repeat Simple_repeat 1 38 0 1317 216 42 51 chr13 67303097 67303453 -52441445 + MLT1B LTR MaLR 34 386 -4 349 82 0 0 chr13 67303550 67303599 -52441299 - MADE1 DNA Mariner -31 49 1 248 245 0 143 chr13 67303599 67303633 -52441265 - MIR SINE MIR -160 102 65 297 0 0 0 chr13 67303633 67303666 -52441232 + (TG)n Simple_repeat Simple_repeat 1 33 0 248 245 0 143 chr13 67303666 67303729 -52441169 - MIR SINE MIR -197 65 19 2097 118 27 0 chr13 67304708 67305005 -52439893 - AluSq SINE Alu -8 305 1 261 0 0 0 chr13 67305353 67305382 -52439516 + (TG)n Simple_repeat Simple_repeat 1 29 0 237 33 0 0 chr13 67305381 67305411 -52439487 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 212 300 25 25 chr13 67307380 67307460 -52437438 + MIR SINE MIR 146 225 -37 31 0 0 0 chr13 67307536 67307567 -52437331 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 67307757 67307780 -52437118 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 67307823 67307852 -52437046 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 67308631 67308655 -52436243 + AT_rich Low_complexity Low_complexity 1 24 0 2139 113 0 0 chr13 67308655 67308965 -52435933 - AluSx SINE Alu -2 310 1 342 379 103 4 chr13 67311312 67311544 -52433354 + MIR SINE MIR 3 257 -5 2272 114 19 30 chr13 67311652 67312019 -52432879 - THE1B LTR MaLR -1 363 1 2164 104 17 0 chr13 67314337 67314636 -52430262 - AluSx SINE Alu -8 304 1 23 54 0 0 chr13 67315946 67315983 -52428915 + AT_rich Low_complexity Low_complexity 1 37 0 209 57 29 0 chr13 67316214 67316249 -52428649 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 7652 27 0 0 chr13 67316249 67317272 -52427626 - L1PA3 LINE L1 -1 6154 5132 3628 34 0 0 chr13 67317272 67317712 -52427186 + L1PA3 LINE L1 4699 5138 -1008 190 323 31 0 chr13 67318156 67318221 -52426677 + MIR SINE MIR 48 114 -148 23 0 0 0 chr13 67319617 67319640 -52425258 + AT_rich Low_complexity Low_complexity 1 23 0 2028 125 4 0 chr13 67320823 67321134 -52423764 - AluSx SINE Alu 0 312 1 2344 69 20 0 chr13 67321144 67321449 -52423449 - AluY SINE Alu 0 311 1 2274 97 77 14 chr13 67323465 67323817 -52421081 + THE1C LTR MaLR 1 374 -1 1824 100 7 18 chr13 67323895 67324175 -52420723 + AluY SINE Alu 35 311 0 769 297 5 10 chr13 67324266 67324475 -52420423 - MIR SINE MIR -14 248 41 25 83 0 0 chr13 67324730 67324790 -52420108 + AT_rich Low_complexity Low_complexity 1 60 0 257 283 40 62 chr13 67327921 67328098 -52416800 + MARNA DNA Mariner 145 317 -269 22 35 0 0 chr13 67328884 67328913 -52415985 + AT_rich Low_complexity Low_complexity 1 29 0 255 61 0 0 chr13 67331705 67331738 -52413160 + (CA)n Simple_repeat Simple_repeat 1 33 0 1672 106 61 93 chr13 67332073 67332384 -52412514 - AluSx SINE Alu -9 303 3 29 60 0 0 chr13 67332985 67333035 -52411863 + AT_rich Low_complexity Low_complexity 1 50 0 414 0 0 0 chr13 67333882 67333928 -52410970 + (TA)n Simple_repeat Simple_repeat 1 46 0 2028 112 4 0 chr13 67333952 67334230 -52410668 + AluSq SINE Alu 1 279 -34 246 87 0 0 chr13 67334240 67334286 -52410612 - LTR66 LTR ERVL -171 439 394 236 157 39 0 chr13 67334286 67334337 -52410561 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr13 67334642 67334669 -52410229 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 67334762 67334793 -52410105 + AT_rich Low_complexity Low_complexity 1 31 0 2620 20 3 0 chr13 67334914 67335214 -52409684 - AluY SINE Alu -10 301 1 25 65 0 0 chr13 67335551 67335597 -52409301 + AT_rich Low_complexity Low_complexity 1 46 0 184 250 125 28 chr13 67336027 67336099 -52408799 + MIR SINE MIR 64 142 -66 295 290 199 19 chr13 67336115 67336377 -52408521 - L2 LINE L2 -5 3308 3000 1627 197 110 16 chr13 67336502 67336928 -52407970 + MLT1D LTR MaLR 40 505 0 198 103 0 0 chr13 67336940 67336969 -52407929 + (A)n Simple_repeat Simple_repeat 1 29 0 360 327 10 68 chr13 67337005 67337210 -52407688 - L2 LINE L2 -647 2667 2475 255 61 0 0 chr13 67338390 67338423 -52406475 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2215 97 13 0 chr13 67338588 67338896 -52406002 - AluSp SINE Alu -1 312 1 654 199 141 50 chr13 67338908 67339170 -52405728 + L1ME1 LINE L1 5877 6162 -4 1052 0 0 0 chr13 67339207 67339325 -52405573 + AluY SINE Alu 192 309 -2 22 35 0 0 chr13 67340017 67340046 -52404852 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr13 67341750 67341781 -52403117 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 67341997 67342018 -52402880 + AT_rich Low_complexity Low_complexity 1 21 0 1886 130 56 0 chr13 67343737 67344021 -52400877 - AluSx SINE Alu -12 300 1 23 54 0 0 chr13 67345945 67345982 -52398916 + AT_rich Low_complexity Low_complexity 1 37 0 423 344 113 5 chr13 67346849 67347061 -52397837 - MIR SINE MIR -20 242 8 27 87 0 0 chr13 67347563 67347632 -52397266 + AT_rich Low_complexity Low_complexity 1 69 0 23 54 0 0 chr13 67347928 67347965 -52396933 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr13 67348656 67348693 -52396205 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr13 67350007 67350041 -52394857 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 67351270 67351294 -52393604 + AT_rich Low_complexity Low_complexity 1 24 0 267 190 0 0 chr13 67352918 67352976 -52391922 + (CA)n Simple_repeat Simple_repeat 2 59 0 2107 122 0 0 chr13 67353885 67354180 -52390718 + AluSg SINE Alu 1 295 -15 438 151 0 0 chr13 67354485 67354558 -52390340 - MER52A LTR ERV1 -6 1749 1677 * 3427 186 163 1 chr13 67354557 67355330 -52389568 - MER52A LTR ERV1 -857 898 1 282 29 0 0 chr13 67356465 67356500 -52388398 + (CA)n Simple_repeat Simple_repeat 2 36 0 2208 205 105 12 chr13 67356935 67357556 -52387342 - Tigger7 DNA MER2_type -6 2581 8 2437 59 0 0 chr13 67358227 67358533 -52386365 + AluY SINE Alu 1 306 -5 2184 118 7 0 chr13 67409429 67409734 -52335164 + AluSx SINE Alu 1 307 -5 565 322 98 11 chr13 67410559 67410845 -52334053 + L2 LINE L2 1764 2074 -1240 1347 198 43 12 chr13 67411618 67411947 -52332951 + L1 LINE L1 4298 4636 -1510 1902 56 0 0 chr13 67411993 67412226 -52332672 + AluY SINE Alu 1 233 -78 231 36 0 0 chr13 67415020 67415048 -52329850 + (CA)n Simple_repeat Simple_repeat 2 29 0 49 52 0 0 chr13 67415158 67415235 -52329663 + AT_rich Low_complexity Low_complexity 1 77 0 23 33 0 0 chr13 67417627 67417657 -52327241 + AT_rich Low_complexity Low_complexity 1 30 0 314 264 58 0 chr13 67418487 67418574 -52326324 - MIR3 SINE MIR -6 202 111 203 146 24 0 chr13 67420713 67420754 -52324144 + GA-rich Low_complexity Low_complexity 3 44 0 275 355 51 46 chr13 67421476 67421870 -52323028 + L2 LINE L2 1994 2389 -925 33 0 0 0 chr13 67422362 67422395 -52322503 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr13 67423739 67423762 -52321136 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr13 67424732 67424778 -52320120 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr13 67425679 67425702 -52319196 + AT_rich Low_complexity Low_complexity 1 23 0 546 313 23 46 chr13 67426047 67426264 -52318634 - MIR SINE MIR -28 234 23 194 290 14 29 chr13 67429303 67429372 -52315526 - L2 LINE L2 -87 3226 3159 2073 168 10 30 chr13 67429661 67429721 -52315177 - MLT1B LTR MaLR 0 390 330 2279 84 35 20 chr13 67429721 67430068 -52314830 + L1PA13 LINE L1 5812 6163 0 2073 168 10 30 chr13 67430068 67430405 -52314493 - MLT1B LTR MaLR -60 330 1 275 304 78 9 chr13 67430598 67430713 -52314185 + MIR SINE MIR 17 139 -69 256 300 106 38 chr13 67430823 67430983 -52313915 - MIR SINE MIR -8 254 84 1884 189 19 6 chr13 67430991 67431351 -52313547 + MLT1A1 LTR MaLR 1 365 0 36 17 0 35 chr13 67431797 67431830 -52313068 + AT_rich Low_complexity Low_complexity 1 33 -23 2046 137 0 0 chr13 67431830 67432129 -52312769 - AluSp SINE Alu -14 299 1 36 17 0 35 chr13 67432129 67432153 -52312745 + AT_rich Low_complexity Low_complexity 33 56 0 375 333 0 18 chr13 67434688 67434840 -52310058 + MIR SINE MIR 34 182 -26 225 276 11 11 chr13 67435167 67435254 -52309644 - L1MC4 LINE L1 -1339 6703 6617 24 91 0 0 chr13 67435420 67435486 -52309412 + AT_rich Low_complexity Low_complexity 1 66 0 2057 123 0 28 chr13 67436757 67437075 -52307823 + AluSq SINE Alu 3 311 -2 2851 3 0 0 chr13 67437214 67437525 -52307373 - AluY SINE Alu 0 311 1 22 0 0 0 chr13 67437558 67437580 -52307318 + AT_rich Low_complexity Low_complexity 1 22 0 1453 192 29 0 chr13 67437580 67437861 -52307037 - AluJb SINE Alu -23 289 1 24 0 0 0 chr13 67438278 67438302 -52306596 + AT_rich Low_complexity Low_complexity 1 24 0 2138 112 0 20 chr13 67438304 67438609 -52306289 + AluSc SINE Alu 1 299 -10 315 272 61 68 chr13 67439195 67439342 -52305556 + MIR SINE MIR 6 151 -111 270 413 64 0 chr13 67439643 67439861 -52305037 - MIR SINE MIR -12 250 19 226 296 86 33 chr13 67439905 67440041 -52304857 + L2 LINE L2 3113 3259 -54 2831 127 0 14 chr13 67440041 67440481 -52304417 + MER57B LTR ERV1 1 434 0 226 296 86 33 chr13 67440481 67440496 -52304402 + L2 LINE L2 3259 3272 -41 306 0 0 0 chr13 67441930 67441964 -52302934 + (TG)n Simple_repeat Simple_repeat 1 34 0 1587 124 93 15 chr13 67441964 67442223 -52302675 - AluSx SINE Alu -33 279 1 1644 248 55 45 chr13 67443637 67445070 -52299828 + L1MEc LINE L1 1957 3455 -2760 470 188 42 0 chr13 67445089 67445185 -52299713 - MER4E LTR ERV1 0 779 680 207 308 62 89 chr13 67446411 67446557 -52298341 + MIR SINE MIR 56 197 -65 360 0 0 0 chr13 67447323 67447363 -52297535 + (TG)n Simple_repeat Simple_repeat 1 40 0 1013 193 92 0 chr13 67447457 67447664 -52297234 + MER34C LTR ERV1 8 233 -352 353 191 38 19 chr13 67447692 67447797 -52297101 + LTR48 LTR ERV1 388 494 -293 376 216 85 80 chr13 67447821 67447997 -52296901 + LTR48 LTR ERV1 609 785 -2 900 311 70 33 chr13 67448070 67448682 -52296216 - L1ME3A LINE L1 -232 5938 5304 698 185 0 0 chr13 67448893 67449012 -52295886 + FLAM_C SINE Alu 1 119 -24 186 244 78 70 chr13 67449745 67449860 -52295038 - MIR SINE MIR -41 221 106 22 0 0 0 chr13 67452596 67452618 -52292280 + AT_rich Low_complexity Low_complexity 1 22 0 295 292 52 52 chr13 67452793 67452947 -52291951 + MIR SINE MIR 53 206 -56 23 54 0 0 chr13 67453470 67453507 -52291391 + AT_rich Low_complexity Low_complexity 1 37 0 275 71 24 0 chr13 67453894 67453936 -52290962 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 301 291 38 0 chr13 67455842 67455921 -52288977 + L2 LINE L2 3230 3311 -2 270 309 65 0 chr13 67456782 67456905 -52287993 - MIR SINE MIR -58 204 74 2417 64 0 0 chr13 67457263 67457559 -52287339 - AluY SINE Alu -6 305 10 205 250 78 16 chr13 67457745 67457809 -52287089 - L3 LINE CR1 -100 1477 1410 1398 128 68 44 chr13 67458363 67458614 -52286284 + AluSq SINE Alu 50 306 -7 242 271 28 56 chr13 67458616 67458723 -52286175 + L2 LINE L2 3209 3312 -1 1943 123 7 10 chr13 67458972 67459272 -52285626 + AluSx SINE Alu 1 299 -13 720 270 62 25 chr13 67459539 67459780 -52285118 - L3 LINE CR1 -476 1101 852 1053 218 37 104 chr13 67460045 67460399 -52284499 + MLT1A2 LTR MaLR 45 374 0 1903 174 7 0 chr13 67461976 67462286 -52282612 + AluJo SINE Alu 1 312 0 196 387 104 9 chr13 67463802 67463908 -52280990 + L2 LINE L2 3147 3262 -10 738 195 0 0 chr13 67464022 67464145 -52280753 + FLAM_C SINE Alu 1 123 -20 2261 101 3 0 chr13 67464283 67464590 -52280308 + AluSg SINE Alu 3 310 0 1649 179 61 3 chr13 67464909 67465238 -52279660 - MER7A DNA MER2_type 0 346 1 3068 152 29 19 chr13 67465272 67465793 -52279105 - MER1A DNA MER1_type 0 527 2 498 287 109 28 chr13 67465864 67466185 -52278713 - Tigger8 DNA MER2_type -109 557 211 23 33 0 0 chr13 67466462 67466492 -52278406 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chr13 67467611 67467655 -52277243 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr13 67468375 67468405 -52276493 + AT_rich Low_complexity Low_complexity 1 30 0 304 304 28 79 chr13 67468628 67468842 -52276056 + MIR SINE MIR 21 223 -39 886 226 35 0 chr13 67469824 67470023 -52274875 - MER3 DNA MER1_type -3 206 1 1632 312 144 24 chr13 67470438 67471283 -52273615 - L3 LINE CR1 -65 1512 566 255 408 94 3 chr13 67471516 67471815 -52273083 - L3 LINE CR1 -1067 510 185 1347 190 42 42 chr13 67472859 67473169 -52271729 + AluJo SINE Alu 3 312 0 23 78 0 0 chr13 67474452 67474503 -52270395 + AT_rich Low_complexity Low_complexity 1 51 0 695 308 96 31 chr13 67476147 67476790 -52268108 - Charlie7 DNA MER1_type -1927 685 1 565 314 6 11 chr13 67477878 67478053 -52266845 - MIR SINE MIR -18 244 71 370 283 108 25 chr13 67478189 67478309 -52266589 - L2 LINE L2 -6 3266 3137 21 36 0 0 chr13 67478738 67478766 -52266132 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 67479649 67479670 -52265228 + AT_rich Low_complexity Low_complexity 1 21 0 189 107 0 0 chr13 67480694 67480722 -52264176 + (TTG)n Simple_repeat Simple_repeat 3 30 0 242 250 24 0 chr13 67481193 67481277 -52263621 + (TA)n Simple_repeat Simple_repeat 2 87 0 363 211 0 0 chr13 67481296 67481386 -52263512 + (TA)n Simple_repeat Simple_repeat 2 91 0 371 333 165 38 chr13 67481818 67482587 -52262311 + L2 LINE L2 1384 2250 -1064 486 0 0 0 chr13 67482589 67482643 -52262255 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 274 231 84 49 chr13 67482646 67482789 -52262109 + L2 LINE L2 2357 2504 -810 257 283 111 10 chr13 67482845 67482944 -52261954 + L2 LINE L2 2665 2773 -541 313 286 22 0 chr13 67483249 67483340 -52261558 + L2 LINE L2 3221 3313 0 2448 59 0 0 chr13 67483667 67483973 -52260925 + AluY SINE Alu 1 306 -5 27 49 0 0 chr13 67484281 67484322 -52260576 + AT_rich Low_complexity Low_complexity 1 41 0 2138 141 63 22 chr13 67484443 67484854 -52260044 + MSTA LTR MaLR 1 428 0 21 57 0 0 chr13 67485329 67485364 -52259534 + AT_rich Low_complexity Low_complexity 1 35 0 906 123 0 39 chr13 67485605 67485760 -52259138 + L1PA11 LINE L1 6025 6173 -1 32 0 0 0 chr13 67485797 67485829 -52259069 + AT_rich Low_complexity Low_complexity 1 32 0 765 155 0 140 chr13 67486198 67486405 -52258493 - L1PA14 LINE L1 -9 6152 5975 25 51 0 0 chr13 67486563 67486602 -52258296 + AT_rich Low_complexity Low_complexity 1 39 0 237 281 26 70 chr13 67486980 67487094 -52257804 + MIR3 SINE MIR 54 162 -46 244 354 16 52 chr13 67487419 67487611 -52257287 + L2 LINE L2 2850 3034 -279 32 0 0 0 chr13 67487839 67487871 -52257027 + AT_rich Low_complexity Low_complexity 1 32 0 2475 100 22 8 chr13 67488501 67488871 -52256027 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr13 67490043 67490068 -52254830 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr13 67490202 67490237 -52254661 + AT_rich Low_complexity Low_complexity 1 35 0 1162 211 11 19 chr13 67490404 67490665 -52254233 - AluJo SINE Alu -7 305 47 188 263 101 71 chr13 67491199 67491298 -52253600 - MIR3 SINE MIR -14 194 93 189 0 0 0 chr13 67492936 67492957 -52251941 + (CATATA)n Simple_repeat Simple_repeat 4 24 0 343 220 15 0 chr13 67493038 67493170 -52251728 + (TA)n Simple_repeat Simple_repeat 1 134 0 25 65 0 0 chr13 67495720 67495766 -52249132 + AT_rich Low_complexity Low_complexity 1 46 0 690 296 152 7 chr13 67496403 67497025 -52247873 - LTR50 LTR ERVL 0 795 2 25 0 0 0 chr13 67497649 67497674 -52247224 + AT_rich Low_complexity Low_complexity 1 25 0 426 279 78 88 chr13 67498706 67498989 -52245909 - L2 LINE L2 -20 3293 3014 273 284 30 0 chr13 67499137 67499204 -52245694 + L2 LINE L2 3201 3269 -3 2212 162 33 35 chr13 67499650 67500016 -52244882 - MSTB LTR MaLR 0 426 58 2176 86 0 0 chr13 67500016 67500341 -52244557 - AluSg SINE Alu 0 327 3 2212 162 33 35 chr13 67500341 67500399 -52244499 - MSTB LTR MaLR -368 58 1 259 360 54 74 chr13 67500890 67501351 -52243547 + L2 LINE L2 2223 2674 -640 230 354 126 0 chr13 67501597 67501724 -52243174 + L2 LINE L2 2890 3032 -240 7656 19 5 2 chr13 67501996 67503002 -52241896 + L1PA3 LINE L1 5145 6152 -3 378 177 0 0 chr13 67503013 67503092 -52241806 + L1 LINE L1 4243 4321 -1825 334 269 150 31 chr13 67503457 67503617 -52241281 - MIR SINE MIR -12 250 72 29 0 0 0 chr13 67504711 67504740 -52240158 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 67505303 67505325 -52239573 + AT_rich Low_complexity Low_complexity 1 22 0 1962 103 64 0 chr13 67506811 67507093 -52237805 + AluSx SINE Alu 13 312 0 360 317 62 19 chr13 67507192 67507400 -52237498 + MIR SINE MIR 46 262 0 2308 72 0 3 chr13 67508455 67508761 -52236137 + AluY SINE Alu 1 305 -6 317 322 107 27 chr13 67508905 67509054 -52235844 - MER5B DNA MER1_type 0 178 18 25 75 0 0 chr13 67509771 67509824 -52235074 + AT_rich Low_complexity Low_complexity 1 53 0 36 0 0 0 chr13 67509944 67509980 -52234918 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 67510527 67510549 -52234349 + AT_rich Low_complexity Low_complexity 1 22 0 184 294 147 63 chr13 67510961 67511104 -52233794 + L2 LINE L2 2219 2373 -941 182 33 67 0 chr13 67511528 67511558 -52233340 + T-rich Low_complexity Low_complexity 4 35 0 565 292 94 0 chr13 67511605 67511776 -52233122 - MER5A DNA MER1_type 0 189 3 534 274 150 0 chr13 67511879 67512032 -52232866 + MER69A DNA AcHobo 2 177 0 452 255 78 65 chr13 67512586 67512817 -52232081 - MIR SINE MIR 0 262 29 246 125 16 31 chr13 67514560 67514624 -52230274 + CT-rich Low_complexity Low_complexity 3 65 0 38 22 0 0 chr13 67514774 67514819 -52230079 + AT_rich Low_complexity Low_complexity 1 45 0 438 247 128 45 chr13 67515599 67515775 -52229123 - L1ME4a LINE L1 -3 6118 5958 297 0 0 0 chr13 67515775 67515808 -52229090 + (CA)n Simple_repeat Simple_repeat 2 34 0 438 247 128 45 chr13 67515808 67515967 -52228931 - L1ME4a LINE L1 -163 5958 5755 180 423 24 24 chr13 67516895 67517018 -52227880 + L2 LINE L2 265 387 -2927 256 325 89 19 chr13 67518363 67518520 -52226378 + L2 LINE L2 3101 3268 -4 231 343 46 23 chr13 67518653 67518838 -52226060 - MIR SINE MIR -46 216 28 2287 105 3 0 chr13 67520849 67521154 -52223744 + AluSc SINE Alu 1 306 -3 2441 57 0 7 chr13 67521699 67522000 -52222898 - AluY SINE Alu -6 305 7 283 306 82 7 chr13 67522048 67522195 -52222703 + L2 LINE L2 3141 3298 -15 209 250 71 18 chr13 67523813 67523869 -52221029 + L2 LINE L2 3211 3269 -3 2072 133 7 0 chr13 67524077 67524370 -52220528 - AluSx SINE Alu -16 296 2 201 196 0 0 chr13 67524412 67524458 -52220440 + (TATG)n Simple_repeat Simple_repeat 3 48 0 2230 86 33 0 chr13 67524629 67524932 -52219966 - AluSp SINE Alu 0 313 1 211 288 0 17 chr13 67526465 67526524 -52218374 + GA-rich Low_complexity Low_complexity 3 60 0 2369 207 103 19 chr13 67526893 67527657 -52217241 - MER63C DNA MER1_type 0 931 54 585 247 47 1 chr13 67528165 67528347 -52216551 + L1MA10 LINE L1 5982 6332 -2 2155 38 0 0 chr13 67528594 67528859 -52216039 - L1PA3 LINE L1 -2232 3914 3650 12209 30 1 0 chr13 67528859 67531090 -52213808 + L1PA3 LINE L1 3924 6152 -3 580 118 0 0 chr13 67532589 67532695 -52212203 - AluSg/x SINE Alu 0 301 196 852 112 17 73 chr13 67532904 67533083 -52211815 - L1MA4A LINE L1 -201 6102 5934 728 136 0 0 chr13 67533083 67533190 -52211708 + L1MA4A LINE L1 6179 6296 -7 1753 128 81 4 chr13 67533934 67534207 -52210691 + AluSx SINE Alu 1 294 -18 1377 180 0 68 chr13 67534678 67534973 -52209925 - AluJb SINE Alu -35 277 3 2382 95 0 0 chr13 67536490 67536794 -52208104 - AluSg SINE Alu -6 304 1 21 0 0 0 chr13 67536803 67536824 -52208074 + AT_rich Low_complexity Low_complexity 1 21 0 560 132 47 19 chr13 67537185 67537291 -52207607 - L1PA15 LINE L1 0 6165 6057 204 158 26 0 chr13 67537815 67537853 -52207045 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 57 39 0 0 chr13 67538057 67538135 -52206763 + AT_rich Low_complexity Low_complexity 1 78 0 370 239 0 0 chr13 67541210 67541281 -52203617 + MER21B LTR ERV1 14 84 -779 813 286 104 10 chr13 67541305 67541602 -52203296 + MER21B LTR ERV1 16 340 -523 2275 204 18 5 chr13 67541666 67542112 -52202786 + LTR45B LTR ERV1 3 454 -35 1001 259 62 45 chr13 67542153 67542508 -52202390 + MER21B LTR ERV1 418 778 -85 818 192 0 0 chr13 67542684 67542835 -52202063 + MLT1A1 LTR MaLR 4 154 -211 697 175 0 8 chr13 67542845 67542965 -52201933 + FLAM_A SINE Alu 7 125 -17 806 225 14 36 chr13 67542967 67543189 -52201709 + MLT1A1 LTR MaLR 149 365 0 1047 223 20 0 chr13 67543679 67543881 -52201017 - Tigger7 DNA MER2_type -496 209 4 2452 78 0 0 chr13 67544061 67544370 -52200528 + AluY SINE Alu 1 309 -2 453 278 131 47 chr13 67544398 67544718 -52200180 + MLT1J2 LTR MaLR 73 419 -31 1359 97 18 44 chr13 67544725 67544952 -52199946 - THE1C LTR MaLR 0 375 155 194 265 20 0 chr13 67545172 67545221 -52199677 - L2 LINE L2 -4 3268 3219 334 388 47 19 chr13 67545640 67546003 -52198895 - L2 LINE L2 -528 2786 2414 201 119 24 24 chr13 67548049 67548091 -52196807 + A-rich Low_complexity Low_complexity 1 42 0 245 226 0 48 chr13 67548350 67548434 -52196464 + T-rich Low_complexity Low_complexity 6 85 0 21 0 0 0 chr13 67548656 67548677 -52196221 + AT_rich Low_complexity Low_complexity 1 21 0 274 301 53 45 chr13 67551219 67551352 -52193546 + L2 LINE L2 3134 3267 -5 2327 75 3 3 chr13 67553894 67554187 -52190711 - AluSg SINE Alu -2 308 16 403 345 70 5 chr13 67554414 67554633 -52190265 - MIR SINE MIR -1 261 30 414 250 50 21 chr13 67556329 67556469 -52188429 - MIR SINE MIR 0 262 119 1361 199 54 0 chr13 67558041 67558317 -52186581 + AluJo SINE Alu 1 291 -21 687 179 0 0 chr13 67558382 67558505 -52186393 + AluJb SINE Alu 1 123 -189 598 317 59 5 chr13 67559083 67559304 -52185594 + MIR SINE MIR 20 252 -10 252 77 0 0 chr13 67559306 67559345 -52185553 + (CAT)n Simple_repeat Simple_repeat 2 40 0 241 323 77 39 chr13 67560141 67560296 -52184602 + MIR SINE MIR 29 189 -73 370 239 138 50 chr13 67561711 67561870 -52183028 - L2 LINE L2 0 3313 3141 227 56 0 74 chr13 67561870 67561924 -52182974 + (TA)n Simple_repeat Simple_repeat 2 51 0 408 246 118 43 chr13 67561929 67562116 -52182782 - L2 LINE L2 -157 3156 2956 214 182 0 0 chr13 67562367 67562411 -52182487 + T-rich Low_complexity Low_complexity 1 44 0 251 344 59 18 chr13 67562509 67562722 -52182176 + MIR SINE MIR 14 240 -22 325 372 24 6 chr13 67562740 67562904 -52181994 - MIR SINE MIR -49 213 47 192 97 0 0 chr13 67563877 67563908 -52180990 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 183 80 0 0 chr13 67563921 67563946 -52180952 + (TA)n Simple_repeat Simple_repeat 1 25 0 945 309 18 15 chr13 67565524 67565860 -52179038 - MLT1I LTR MaLR -6 403 67 342 230 87 81 chr13 67565880 67566041 -52178857 - MIR SINE MIR -12 250 89 509 68 14 0 chr13 67567403 67567477 -52177421 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2361 85 0 0 chr13 67568751 67569045 -52175853 - AluSq SINE Alu -19 294 1 22 35 0 0 chr13 67569184 67569213 -52175685 + AT_rich Low_complexity Low_complexity 1 29 0 794 207 122 15 chr13 67569767 67570038 -52174860 - MER33 DNA MER1_type -23 301 2 29 47 0 0 chr13 67570098 67570141 -52174757 + AT_rich Low_complexity Low_complexity 1 43 0 53 49 0 0 chr13 67570744 67570825 -52174073 + AT_rich Low_complexity Low_complexity 1 81 0 336 326 80 13 chr13 67570997 67571182 -52173716 - MIR SINE MIR -58 204 11 52 30 0 0 chr13 67572573 67572639 -52172259 + AT_rich Low_complexity Low_complexity 1 66 0 277 267 116 12 chr13 67573372 67573458 -52171440 - MER5A DNA MER1_type -46 143 49 238 330 58 0 chr13 67573933 67574036 -52170862 + L1MC/D LINE L1 5536 5644 -2164 2055 125 13 0 chr13 67574122 67574427 -52170471 + AluSx SINE Alu 1 309 -3 1484 211 99 21 chr13 67574624 67575135 -52169763 + MER39 LTR ERV1 4 707 0 341 315 103 30 chr13 67575583 67575748 -52169150 - MER5A DNA MER1_type -6 183 7 21 36 0 0 chr13 67575824 67575852 -52169046 + AT_rich Low_complexity Low_complexity 1 28 0 796 46 18 0 chr13 67576542 67576651 -52168247 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 1566 167 75 23 chr13 67576654 67577001 -52167897 + MLT1A1 LTR MaLR 1 365 0 277 210 16 16 chr13 67578660 67578722 -52166176 - MIR SINE MIR -16 246 185 644 316 166 25 chr13 67579458 67580136 -52164762 + L2 LINE L2 2532 3313 0 540 250 109 32 chr13 67580772 67580992 -52163906 + LTR16B LTR ERVL 228 464 0 710 119 0 0 chr13 67581539 67581640 -52163258 + AluSg SINE Alu 1 101 -209 2835 190 27 96 chr13 67581886 67582713 -52162185 + MER4E LTR ERV1 1 770 -9 2064 132 3 0 chr13 67583798 67584101 -52160797 + AluSq SINE Alu 1 304 -9 2428 204 42 39 chr13 67584451 67585073 -52159825 - L1MA10 LINE L1 -2 6332 5709 22 56 0 0 chr13 67585719 67585755 -52159143 + AT_rich Low_complexity Low_complexity 1 36 0 3733 164 116 13 chr13 67586513 67587221 -52157677 + LTR39 LTR ERV1 3 783 0 2371 75 7 3 chr13 67587230 67587538 -52157360 + AluSc SINE Alu 1 309 0 267 31 0 0 chr13 67587539 67587571 -52157327 + (TA)n Simple_repeat Simple_repeat 2 33 0 1883 203 164 28 chr13 67588747 67589288 -52155610 + Tigger6a DNA MER2_type 5 619 -464 542 238 122 16 chr13 67589598 67589764 -52155134 + MER5A DNA MER1_type 4 189 0 190 225 0 0 chr13 67589812 67589852 -52155046 - L2 LINE L2 -1 3312 3273 260 264 58 23 chr13 67591526 67591613 -52153285 + L2 LINE L2 3224 3313 0 1226 156 33 51 chr13 67592729 67593005 -52151893 - Tigger6 DNA MER2_type 0 1597 1327 21 36 0 0 chr13 67593815 67593843 -52151055 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 67594089 67594110 -52150788 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 67594476 67594497 -52150401 + AT_rich Low_complexity Low_complexity 1 21 0 1901 137 10 33 chr13 67594507 67594813 -52150085 - AluJb SINE Alu -13 299 1 580 152 136 0 chr13 67594909 67595034 -52149864 - L1MC1 LINE L1 0 6333 6192 301 281 245 0 chr13 67596062 67596201 -52148697 - MIR SINE MIR -33 229 57 26 50 0 0 chr13 67596370 67596410 -52148488 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr13 67598294 67598322 -52146576 + AT_rich Low_complexity Low_complexity 1 28 0 2023 128 3 0 chr13 67598322 67598604 -52146294 - AluSq SINE Alu -27 286 4 26 30 0 0 chr13 67598636 67598669 -52146229 + AT_rich Low_complexity Low_complexity 1 33 0 278 313 35 35 chr13 67600833 67600948 -52143950 + MIR SINE MIR 29 143 -119 216 279 16 0 chr13 67603994 67604055 -52140843 + (TATG)n Simple_repeat Simple_repeat 2 63 0 312 346 48 32 chr13 67605759 67605947 -52138951 + L1ME LINE L1 5499 5689 -432 2389 71 0 3 chr13 67607043 67607339 -52137559 - AluY SINE Alu -16 295 1 250 247 12 0 chr13 67608356 67608441 -52136457 + (TA)n Simple_repeat Simple_repeat 2 87 0 4601 212 74 74 chr13 67609034 67610787 -52134111 + MER52A LTR ERV1 3 1755 0 22 35 0 0 chr13 67610819 67610848 -52134050 + AT_rich Low_complexity Low_complexity 1 29 0 1922 112 31 7 chr13 67612732 67613026 -52131872 + AluSg SINE Alu 1 301 -9 251 339 119 11 chr13 67613116 67613293 -52131605 - MIR SINE MIR -44 218 23 339 315 190 10 chr13 67613326 67613526 -52131372 + L2 LINE L2 3077 3312 -1 26 50 0 0 chr13 67614341 67614381 -52130517 + AT_rich Low_complexity Low_complexity 1 40 0 205 352 120 0 chr13 67614729 67614837 -52130061 - MIR SINE MIR -19 243 123 405 198 0 0 chr13 67615109 67615195 -52129703 + CT-rich Low_complexity Low_complexity 4 89 0 1223 149 8 55 chr13 67615206 67615441 -52129457 - AluJb SINE Alu -8 304 81 2141 63 0 0 chr13 67616045 67616316 -52128582 - AluY SINE Alu -19 292 22 608 232 52 10 chr13 67616662 67616887 -52128011 - MER106B DNA MER1_type -3 1056 1 768 227 41 45 chr13 67618093 67618362 -52126536 + LTR37A LTR ERV1 129 396 -30 367 268 83 25 chr13 67618413 67618570 -52126328 + MIR SINE MIR 3 168 -94 252 308 22 0 chr13 67618582 67618673 -52126225 + MIR SINE MIR 114 206 -56 261 0 0 0 chr13 67622678 67622707 -52122191 + (TAA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr13 67623657 67623685 -52121213 + AT_rich Low_complexity Low_complexity 1 28 0 181 379 19 29 chr13 67624245 67624348 -52120550 + MIR SINE MIR 34 135 -73 283 204 87 0 chr13 67624893 67624963 -52119935 - MIR SINE MIR -85 177 100 2002 112 0 4 chr13 67624986 67625302 -52119596 + AluSc SINE Alu 4 318 0 29 0 0 0 chr13 67626358 67626387 -52118511 + AT_rich Low_complexity Low_complexity 1 29 0 227 204 93 0 chr13 67627426 67627480 -52117418 - MIR SINE MIR -103 105 47 273 305 176 14 chr13 67627483 67627693 -52117205 + MIR SINE MIR 9 252 -10 363 192 0 0 chr13 67628316 67628389 -52116509 + (TG)n Simple_repeat Simple_repeat 2 74 0 196 211 0 70 chr13 67628406 67628463 -52116435 - MIR SINE MIR -26 236 184 403 276 107 56 chr13 67628475 67628671 -52116227 - MIR SINE MIR -55 207 2 1830 146 4 4 chr13 67629059 67629360 -52115538 + AluSg SINE Alu 1 301 0 330 26 0 0 chr13 67630154 67630167 -52114731 + (TG)n Simple_repeat Simple_repeat 1 52 0 330 26 0 0 chr13 67630167 67630206 -52114692 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr13 67631037 67631062 -52113836 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr13 67631726 67631749 -52113149 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 213 132 0 0 chr13 67631888 67631926 -52112972 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 222 37 0 chr13 67632105 67632186 -52112712 + (TA)n Simple_repeat Simple_repeat 2 85 0 31 0 0 0 chr13 67632402 67632433 -52112465 + AT_rich Low_complexity Low_complexity 1 31 0 3088 86 0 86 chr13 67632940 67633443 -52111455 + LTR46 LTR ERV1 1 460 0 191 411 20 14 chr13 67634769 67634915 -52109983 + L2 LINE L2 2917 3063 -209 459 308 100 17 chr13 67634999 67635288 -52109610 + L3 LINE CR1 639 951 -626 439 335 119 17 chr13 67635724 67636017 -52108881 + L3 LINE CR1 1250 1572 -5 186 43 0 0 chr13 67637080 67637103 -52107795 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 291 333 68 0 chr13 67637564 67637696 -52107202 - MER104 DNA Tc2 -4 176 36 23 68 0 0 chr13 67637709 67637753 -52107145 + AT_rich Low_complexity Low_complexity 1 44 0 2065 154 3 47 chr13 67638638 67639002 -52105896 + MER7A DNA MER2_type 1 346 0 29 47 0 0 chr13 67639312 67639355 -52105543 + AT_rich Low_complexity Low_complexity 1 43 0 947 43 0 0 chr13 67639634 67639751 -52105147 + L1PA5 LINE L1 6037 6153 -1 481 373 24 14 chr13 67640739 67640951 -52103947 + MIR SINE MIR 49 262 0 23 0 0 0 chr13 67640975 67640998 -52103900 + AT_rich Low_complexity Low_complexity 1 23 0 2358 102 65 3 chr13 67641059 67641412 -52103486 + MER51B LTR ERV1 3 377 0 2250 107 0 12 chr13 67643018 67643354 -52101544 - L1PB1 LINE L1 0 6151 5820 266 164 0 33 chr13 67643372 67643433 -52101465 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 180 0 0 0 chr13 67643436 67643456 -52101442 + (TG)n Simple_repeat Simple_repeat 2 21 0 283 100 0 0 chr13 67643464 67643504 -52101394 - L1PB1 LINE L1 -371 5780 5741 532 253 67 0 chr13 67643613 67643763 -52101135 + MER3 DNA MER1_type 50 209 0 186 302 193 40 chr13 67643769 67644044 -52100854 - L2 LINE L2 -55 3258 2942 279 293 61 20 chr13 67644331 67644430 -52100468 - MIR3 SINE MIR -11 197 95 224 252 157 52 chr13 67645520 67645635 -52099263 + L2 LINE L2 3187 3313 0 315 0 0 0 chr13 67647560 67647595 -52097303 + (CA)n Simple_repeat Simple_repeat 2 36 0 229 266 31 0 chr13 67648366 67648430 -52096468 - MIR SINE MIR -10 252 187 2272 62 7 0 chr13 67649374 67649663 -52095235 - AluY SINE Alu -13 298 8 542 322 80 8 chr13 67649958 67650222 -52094676 + L1MB8 LINE L1 5880 6162 -16 347 306 0 10 chr13 67650322 67650420 -52094478 + MIR SINE MIR 92 188 -74 36 53 0 0 chr13 67652211 67652268 -52092630 + AT_rich Low_complexity Low_complexity 1 57 0 335 193 0 0 chr13 67652592 67652649 -52092249 - L2 LINE L2 -1 3312 3256 26 0 0 0 chr13 67655305 67655331 -52089567 + AT_rich Low_complexity Low_complexity 1 26 0 210 150 0 25 chr13 67657075 67657115 -52087783 + (TG)n Simple_repeat Simple_repeat 2 40 0 1012 143 0 0 chr13 67660214 67660361 -52084537 - AluJo SINE Alu -159 153 7 2265 91 20 0 chr13 67660386 67660684 -52084214 - AluSg SINE Alu -6 304 1 473 257 110 45 chr13 67661519 67661764 -52083134 + MIR SINE MIR 1 261 -1 1517 57 0 0 chr13 67665000 67665332 -52079566 + (G)n Simple_repeat Simple_repeat 1 332 0 479 253 32 38 chr13 67665590 67665748 -52079150 - MER5B DNA MER1_type 0 178 22 791 162 0 0 chr13 67666369 67666486 -52078412 + FLAM_C SINE Alu 1 117 -16 21 0 0 0 chr13 67666497 67666518 -52078380 + AT_rich Low_complexity Low_complexity 1 21 0 2065 120 0 0 chr13 67666518 67666802 -52078096 - AluSg SINE Alu -26 284 1 23 0 0 0 chr13 67667039 67667062 -52077836 + AT_rich Low_complexity Low_complexity 1 23 0 216 344 31 0 chr13 67667563 67667627 -52077271 + L2 LINE L2 3228 3293 -20 2091 110 0 31 chr13 67667783 67668102 -52076796 + AluSg SINE Alu 2 310 0 180 0 0 0 chr13 67668637 67668657 -52076241 + (TAA)n Simple_repeat Simple_repeat 2 21 0 445 297 113 21 chr13 67674305 67674544 -52070354 + MIR SINE MIR 1 261 -1 247 204 133 41 chr13 67674877 67674975 -52069923 - MIR SINE MIR -51 211 105 21 36 0 0 chr13 67675069 67675097 -52069801 + AT_rich Low_complexity Low_complexity 1 28 0 1817 153 40 10 chr13 67675100 67675400 -52069498 - AluSx SINE Alu -3 309 1 1443 189 7 30 chr13 67678232 67678533 -52066365 - AluJo SINE Alu -18 294 1 511 171 0 0 chr13 67679235 67679317 -52065581 + AluJ/FLAM SINE Alu 1 82 -230 1360 191 52 0 chr13 67679372 67679644 -52065254 + AluJb SINE Alu 1 286 -26 1638 124 4 35 chr13 67679764 67680022 -52064876 - AluSx SINE Alu -13 299 50 28 0 0 0 chr13 67680830 67680858 -52064040 + AT_rich Low_complexity Low_complexity 1 28 0 375 317 16 0 chr13 67680960 67681083 -52063815 + L2 LINE L2 2922 3046 -267 992 160 64 14 chr13 67681134 67681353 -52063545 + LTR1 LTR ERV1 18 247 -538 2949 134 71 13 chr13 67681465 67682003 -52062895 + LTR1 LTR ERV1 217 785 0 223 292 146 43 chr13 67682034 67682219 -52062679 + L2 LINE L2 3110 3313 0 195 256 166 80 chr13 67682283 67682482 -52062416 + L2 LINE L2 3098 3313 0 1438 206 63 23 chr13 67683454 67683803 -52061095 + MLT1A1 LTR MaLR 1 363 -2 274 367 28 0 chr13 67684091 67684200 -52060698 - MIR SINE MIR -74 188 77 2318 65 0 7 chr13 67685322 67685616 -52059282 + AluY SINE Alu 1 292 -19 2133 130 0 0 chr13 67689354 67689662 -52055236 + AluSg1 SINE Alu 2 309 0 330 297 87 50 chr13 67689918 67690137 -52054761 + L2 LINE L2 3078 3304 -9 30 27 0 0 chr13 67690141 67690178 -52054720 + AT_rich Low_complexity Low_complexity 1 37 0 320 296 82 20 chr13 67691177 67691373 -52053525 + L2 LINE L2 3036 3243 -70 253 248 115 36 chr13 67691459 67691581 -52053317 + MIR3 SINE MIR 74 205 -3 648 299 23 32 chr13 67692257 67692474 -52052424 + MIR SINE MIR 13 227 -35 1348 194 10 35 chr13 67693506 67693795 -52051103 + AluJo SINE Alu 1 282 -30 21 71 0 0 chr13 67694400 67694442 -52050456 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr13 67694794 67694817 -52050081 + AT_rich Low_complexity Low_complexity 1 23 0 1964 143 0 0 chr13 67695703 67696003 -52048895 + AluSx SINE Alu 1 300 -12 406 311 61 20 chr13 67696741 67696937 -52047961 + MIR SINE MIR 47 250 -12 2082 116 0 0 chr13 67697658 67697959 -52046939 + AluSx SINE Alu 1 301 -11 231 382 66 7 chr13 67700379 67700515 -52044383 + MIR SINE MIR 105 248 -14 216 341 160 32 chr13 67700652 67701253 -52043645 + L2 LINE L2 1683 2360 -954 295 330 40 10 chr13 67701676 67701776 -52043122 + MIR SINE MIR 52 154 -108 248 320 51 58 chr13 67702033 67702189 -52042709 + L2 LINE L2 2898 3052 -220 269 301 22 66 chr13 67702370 67702506 -52042392 + L2 LINE L2 3170 3299 -14 292 264 58 41 chr13 67702592 67702713 -52042185 - MIR SINE MIR -115 147 25 24 0 0 0 chr13 67702995 67703019 -52041879 + AT_rich Low_complexity Low_complexity 1 24 0 188 326 63 0 chr13 67704754 67704849 -52040049 - L2 LINE L2 -1406 1908 1808 1415 308 131 48 chr13 67705210 67706052 -52038846 + L2 LINE L2 1877 2788 -526 22 35 0 0 chr13 67706981 67707010 -52037888 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 67707116 67707148 -52037750 + AT_rich Low_complexity Low_complexity 1 32 0 280 116 0 0 chr13 67707185 67707228 -52037670 + MER85 DNA T2_type 1 43 -96 242 67 0 0 chr13 67707310 67707340 -52037558 + MER85 DNA T2_type 105 134 -5 1641 171 3 11 chr13 67707859 67708145 -52036753 + AluJb SINE Alu 3 286 -26 2192 111 3 0 chr13 67709144 67709442 -52035456 - AluSp SINE Alu -14 299 1 27 0 0 0 chr13 67709500 67709527 -52035371 + AT_rich Low_complexity Low_complexity 1 27 0 564 189 230 27 chr13 67709822 67709970 -52034928 - MER5A DNA MER1_type -3 186 9 28 48 0 0 chr13 67711040 67711082 -52033816 + AT_rich Low_complexity Low_complexity 1 42 0 1140 134 8 86 chr13 67711176 67711444 -52033454 - L1MA4 LINE L1 -1 6299 6053 832 247 16 0 chr13 67712316 67712498 -52032400 + MER5A DNA MER1_type 2 186 -3 21 36 0 0 chr13 67715198 67715226 -52029672 + AT_rich Low_complexity Low_complexity 1 28 0 215 185 0 19 chr13 67720574 67720628 -52024270 + CT-rich Low_complexity Low_complexity 3 55 0 21 36 0 0 chr13 67720721 67720749 -52024149 + GC_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 67721292 67721336 -52023562 + AT_rich Low_complexity Low_complexity 1 44 0 208 353 0 0 chr13 67722606 67722674 -52022224 + L2 LINE L2 3205 3272 0 2451 56 0 3 chr13 67723086 67723389 -52021509 + AluY SINE Alu 6 307 -4 360 0 0 0 chr13 67725091 67725131 -52019767 + (TA)n Simple_repeat Simple_repeat 2 41 0 281 340 19 0 chr13 67725131 67725237 -52019661 - MIR SINE MIR -71 191 84 22 0 0 0 chr13 67725911 67725933 -52018965 + AT_rich Low_complexity Low_complexity 1 22 0 262 239 55 119 chr13 67725956 67726065 -52018833 - L2 LINE L2 -11 3261 3160 279 54 0 0 chr13 67726841 67726878 -52018020 + (TA)n Simple_repeat Simple_repeat 1 37 0 310 148 35 35 chr13 67728422 67728537 -52016361 + (TA)n Simple_repeat Simple_repeat 2 116 0 4057 215 56 6 chr13 67729726 67730715 -52014183 + L1 LINE L1 4304 5341 -805 24 0 0 0 chr13 67732881 67732905 -52011993 + AT_rich Low_complexity Low_complexity 1 24 0 372 329 125 0 chr13 67733211 67733363 -52011535 - MER5A DNA MER1_type -3 186 16 21 57 0 0 chr13 67735928 67735963 -52008935 + AT_rich Low_complexity Low_complexity 1 35 0 2274 107 0 0 chr13 67736017 67736315 -52008583 + AluSx SINE Alu 1 298 -14 329 207 98 0 chr13 67736413 67736495 -52008403 - MLT1J LTR MaLR 0 595 506 268 257 74 80 chr13 67736643 67736818 -52008080 + L1MEd LINE L1 335 508 -5611 2401 118 5 18 chr13 67737166 67737549 -52007349 + MER41A LTR ERV1 1 378 -176 415 288 30 82 chr13 67737945 67738310 -52006588 - MLT1J LTR MaLR -153 358 13 189 0 0 0 chr13 67738480 67738501 -52006397 + (CATA)n Simple_repeat Simple_repeat 3 23 0 21 57 0 0 chr13 67739679 67739714 -52005184 + AT_rich Low_complexity Low_complexity 1 35 0 201 219 24 0 chr13 67739752 67739793 -52005105 - L2 LINE L2 -5 3308 3267 183 80 0 0 chr13 67739922 67739947 -52004951 + (TTTTTA)n Simple_repeat Simple_repeat 5 29 0 296 272 18 95 chr13 67740328 67740497 -52004401 + MLT1I LTR MaLR 244 399 -10 753 191 28 21 chr13 67741754 67742060 -52002838 + AluJo SINE Alu 2 308 0 267 279 13 0 chr13 67742325 67742404 -52002494 - MER103 DNA DNA -44 122 43 972 234 202 55 chr13 67742570 67743105 -52001793 - MLT1E3 LTR MaLR -7 617 3 563 219 168 26 chr13 67743107 67743262 -52001636 - MER20 DNA MER1_type -34 185 9 23 33 0 0 chr13 67743367 67743397 -52001501 + AT_rich Low_complexity Low_complexity 1 30 0 184 344 110 25 chr13 67744115 67744278 -52000620 + MIR SINE MIR 71 247 -15 309 118 0 0 chr13 67744349 67744400 -52000498 + (CA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr13 67745738 67745760 -51999138 + AT_rich Low_complexity Low_complexity 1 22 0 267 254 0 0 chr13 67747114 67747169 -51997729 - MER33 DNA MER1_type -214 110 56 438 179 58 81 chr13 67747347 67747488 -51997410 + MER33 DNA MER1_type 156 294 -2291 1975 102 42 0 chr13 67747488 67747772 -51997126 - AluSq SINE Alu -15 298 3 438 179 58 81 chr13 67747772 67747803 -51997095 + MER33 DNA MER1_type 294 324 0 329 253 116 76 chr13 67747807 67748233 -51996665 + L1MC4 LINE L1 7334 7787 -174 2226 53 35 0 chr13 67748233 67748517 -51996381 - AluY SINE Alu -17 294 1 329 253 116 76 chr13 67748517 67748627 -51996271 + L1MC4 LINE L1 7787 7891 -70 27 0 0 0 chr13 67749754 67749781 -51995117 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr13 67749912 67749941 -51994957 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr13 67751627 67751658 -51993240 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr13 67751661 67751699 -51993199 + (TA)n Simple_repeat Simple_repeat 2 40 0 452 312 42 45 chr13 67753176 67753433 -51991465 + MIR SINE MIR 5 261 -1 485 246 74 0 chr13 67753562 67753684 -51991214 - FLAM_C SINE Alu -1 132 2 192 295 19 57 chr13 67754402 67754507 -51990391 - L2 LINE L2 -2 3270 3170 1369 192 4 12 chr13 67755459 67755704 -51989194 - AluJo SINE Alu -69 243 1 186 154 31 46 chr13 67755933 67755998 -51988900 + (CATA)n Simple_repeat Simple_repeat 4 67 0 27 0 0 0 chr13 67756006 67756033 -51988865 + AT_rich Low_complexity Low_complexity 1 27 0 25 75 0 0 chr13 67756178 67756231 -51988667 + AT_rich Low_complexity Low_complexity 1 53 0 389 269 134 21 chr13 67756966 67757211 -51987687 + L1ME LINE L1 5452 5731 -390 222 339 83 25 chr13 67758525 67758646 -51986252 + MER5A DNA MER1_type 62 189 0 260 335 71 29 chr13 67758906 67759076 -51985822 - MIR SINE MIR -2 260 84 232 259 69 0 chr13 67759752 67759810 -51985088 + L2 LINE L2 3210 3271 -1 3492 129 9 0 chr13 67759933 67760483 -51984415 + L1MA5 LINE L1 5746 6300 0 345 136 0 0 chr13 67761981 67762047 -51982851 + (CA)n Simple_repeat Simple_repeat 1 66 0 2092 111 34 45 chr13 67762452 67762831 -51982067 - THE1C LTR MaLR 0 375 1 1216 228 127 93 chr13 67764048 67764803 -51980095 + LTR1B LTR ERV1 4 784 -42 387 354 81 46 chr13 67764926 67765361 -51979537 + L2 LINE L2 1524 1973 -1341 188 338 12 12 chr13 67767568 67767648 -51977250 - MIR SINE MIR -114 148 69 1832 154 3 26 chr13 67768240 67768551 -51976347 - AluJo SINE Alu -7 305 2 319 344 8 8 chr13 67769566 67769691 -51975207 + HERV16 LTR ERVL 338 462 -4534 1516 367 67 20 chr13 67769785 67771498 -51973400 + HERV16 LTR ERVL 2832 4700 -1064 555 307 171 21 chr13 67771503 67772014 -51972884 - MLT1G1 LTR MaLR -2 553 9 481 329 26 13 chr13 67772147 67772381 -51972517 + HERV16 LTR ERVL 4920 5156 -608 469 273 60 76 chr13 67774601 67774916 -51969982 - HAL1 LINE L1 -383 2124 1815 239 319 11 0 chr13 67774908 67775002 -51969896 - HAL1 LINE L1 -1600 907 813 * 390 327 210 31 chr13 67775057 67775504 -51969394 - HAL1 LINE L1 -1793 714 188 373 300 58 0 chr13 67775549 67775669 -51969229 - HAL1 LINE L1 -2376 131 5 255 231 179 0 chr13 67775938 67776016 -51968882 + L1M3a LINE L1 772 863 -5092 339 164 0 0 chr13 67777113 67777174 -51967724 + (TA)n Simple_repeat Simple_repeat 1 61 0 237 236 83 14 chr13 67777359 67777431 -51967467 + MIR3 SINE MIR 131 207 -1 895 234 214 64 chr13 67778563 67779034 -51965864 - MLT1F LTR MaLR 0 542 1 28 0 0 0 chr13 67779487 67779515 -51965383 + AT_rich Low_complexity Low_complexity 1 28 0 1347 113 31 18 chr13 67779644 67779866 -51965032 + L1PA11 LINE L1 5950 6174 0 21 71 0 0 chr13 67781264 67781306 -51963592 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr13 67781531 67781558 -51963340 + AT_rich Low_complexity Low_complexity 1 27 0 308 294 49 28 chr13 67783184 67783327 -51961571 - MLT1J LTR MaLR -37 474 329 260 219 122 37 chr13 67783456 67783538 -51961360 - MLT1J2 LTR MaLR -318 132 44 506 294 103 55 chr13 67784628 67784995 -51959903 - MLT1J LTR MaLR 0 511 127 589 339 25 8 chr13 67785009 67785251 -51959647 + LTR16A LTR ERVL 27 272 -178 545 252 52 0 chr13 67785359 67785494 -51959404 + LTR16A LTR ERVL 299 440 -10 230 342 87 43 chr13 67786800 67787170 -51957728 - L2 LINE L2 -19 3294 953 609 163 0 0 chr13 67787351 67787443 -51957455 - Tigger7 DNA MER2_type 0 2487 2396 * 2406 204 19 41 chr13 67787437 67787952 -51956946 - Tigger7 DNA MER2_type -208 525 22 1692 231 31 75 chr13 67788601 67789150 -51955748 + L1MDa LINE L1 16 540 -6000 1014 182 53 151 chr13 67789211 67789793 -51955105 + L1MDa LINE L1 1297 1821 -4719 523 217 51 22 chr13 67789815 67789953 -51954945 - L1ME LINE L1 -620 5544 5403 1664 141 61 14 chr13 67790273 67790594 -51954304 - AluSx SINE Alu 0 334 1 2112 134 0 0 chr13 67790791 67791090 -51953808 + AluSx SINE Alu 1 299 -13 492 289 68 51 chr13 67791299 67791610 -51953288 - HsTC2 DNA Tc2 -1089 809 494 2512 38 0 0 chr13 67791674 67791965 -51952933 - AluY SINE Alu -20 291 1 611 209 32 25 chr13 67792947 67793105 -51951793 + MLT1D LTR MaLR 1 159 -346 232 125 0 0 chr13 67793112 67793144 -51951754 - LTR26B LTR ERV1 0 531 500 1353 135 56 75 chr13 67793144 67793411 -51951487 - LTR26B LTR ERV1 -269 262 1 1031 217 55 32 chr13 67793411 67793746 -51951152 + MLT1D LTR MaLR 161 495 -10 1888 222 31 5 chr13 67793900 67794315 -51950583 + MSTB LTR MaLR 1 426 0 1663 222 52 34 chr13 67794542 67795038 -51949860 - MLT1D LTR MaLR 0 505 1 5903 100 3 0 chr13 67795657 67796796 -51948102 - L1PA11 LINE L1 0 6174 5055 207 250 40 66 chr13 67796922 67796998 -51947900 + MER91C DNA MER1_type 33 106 -34 1815 216 96 18 chr13 67798987 67799445 -51945453 - MLT1D LTR MaLR -8 497 4 1908 121 31 62 chr13 67799457 67799845 -51945053 - L1MA8 LINE L1 0 6291 5916 218 208 19 0 chr13 67800336 67800389 -51944509 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 185 180 0 49 chr13 67800407 67800468 -51944430 + (CATA)n Simple_repeat Simple_repeat 4 61 0 429 195 0 0 chr13 67800556 67800643 -51944255 - AluS SINE Alu 0 312 226 1774 326 15 17 chr13 67801204 67801956 -51942942 - HERVI LTR ERV1 -138 7647 6898 1626 236 50 74 chr13 67802931 67803420 -51941478 + MLT1F LTR MaLR 1 477 -65 1987 123 0 3 chr13 67803420 67803705 -51941193 - AluSg SINE Alu -26 284 1 1626 236 50 74 chr13 67803705 67803770 -51941128 + MLT1F LTR MaLR 477 542 0 364 308 137 42 chr13 67803805 67804286 -51940612 - HAL1 LINE L1 -1561 946 420 1351 179 3 67 chr13 67804557 67804908 -51939990 - AluSx SINE Alu 0 312 1 1388 221 127 52 chr13 67805728 67806208 -51938690 - LTR40a LTR ERVL -2 517 2 372 297 73 31 chr13 67806987 67807465 -51937433 + L1ME LINE L1 5280 5833 -337 234 62 0 0 chr13 67807617 67807649 -51937249 + (TG)n Simple_repeat Simple_repeat 2 33 0 7421 91 1 7 chr13 67808782 67809874 -51935024 + L1P LINE L1 4336 5423 -743 2189 139 72 27 chr13 67810476 67810986 -51933912 + MLT2A2 LTR ERVL 1 554 0 23 33 0 0 chr13 67811843 67811873 -51933025 + AT_rich Low_complexity Low_complexity 1 30 0 208 293 98 81 chr13 67812322 67812445 -51932453 - MER5A DNA MER1_type -8 181 57 43 29 0 15 chr13 67812510 67812560 -51932338 + AT_rich Low_complexity Low_complexity 1 51 -16 2746 52 6 0 chr13 67812560 67812906 -51931992 - L1PA7 LINE L1 -13 6141 5794 43 29 0 15 chr13 67812906 67812923 -51931975 + AT_rich Low_complexity Low_complexity 51 67 0 2177 74 3 7 chr13 67812951 67813235 -51931663 + MLT2A1 LTR ERVL 1 283 -161 230 278 183 0 chr13 67813340 67813455 -51931443 - HAL1 LINE L1 -2369 138 3 267 173 0 0 chr13 67814392 67814444 -51930454 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 1812 144 144 11 chr13 67814687 67815061 -51929837 - MSTA LTR MaLR -2 426 3 235 333 28 19 chr13 67815114 67815222 -51929676 - MER5A DNA MER1_type -31 158 50 333 323 71 0 chr13 67815270 67815425 -51929473 - MIR SINE MIR -15 247 82 651 236 22 11 chr13 67815466 67815644 -51929254 - MLT1C LTR MaLR 0 467 288 437 203 268 7 chr13 67815657 67815795 -51929103 - MLT1C LTR MaLR -291 176 3 320 313 80 11 chr13 67817104 67817280 -51927618 + Harlequin LTR ERV1 180 367 -6282 496 337 0 16 chr13 67817537 67817724 -51927174 + Harlequin LTR ERV1 787 970 -6815 4518 310 49 55 chr13 67817952 67822348 -51922550 + Harlequin LTR ERV1 966 5756 -2029 289 303 41 8 chr13 67822566 67822688 -51922210 + Harlequin LTR ERV1 3029 3154 -3742 750 147 44 158 chr13 67822958 67823109 -51921789 + MLT2A2 LTR ERVL 270 437 -16 457 91 13 13 chr13 67823109 67823186 -51921712 + (TA)n Simple_repeat Simple_repeat 2 78 0 750 147 44 158 chr13 67823186 67823222 -51921676 + MLT2A2 LTR ERVL 437 395 -58 207 0 0 0 chr13 67823222 67823245 -51921653 + (CA)n Simple_repeat Simple_repeat 2 24 0 750 147 44 158 chr13 67823245 67823299 -51921599 + MLT2A2 LTR ERVL 394 453 0 469 68 0 0 chr13 67823321 67823380 -51921518 + MSTA LTR MaLR 1 59 -369 285 39 59 0 chr13 67823762 67823813 -51921085 + (TA)n Simple_repeat Simple_repeat 2 55 0 1100 313 89 25 chr13 67824119 67824668 -51920230 - HERVL LTR ERVL -1051 4603 4020 252 348 53 35 chr13 67825015 67825242 -51919656 - HERVL LTR ERVL -2076 3688 3458 236 278 0 5 chr13 67825367 67825468 -51919430 + MER5A DNA MER1_type 42 189 0 21 71 0 0 chr13 67825675 67825717 -51919181 + AT_rich Low_complexity Low_complexity 1 42 0 1484 179 70 17 chr13 67826178 67826480 -51918418 + MLT1A1 LTR MaLR 4 321 -44 346 200 120 0 chr13 67826480 67826555 -51918343 + MLT1A1 LTR MaLR 282 365 0 496 77 26 0 chr13 67826710 67826788 -51918110 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 338 0 0 0 chr13 67828713 67828757 -51916141 - L1PA2 LINE L1 -1 6154 6111 664 147 28 0 chr13 67830672 67830781 -51914117 - MSTB LTR MaLR -49 377 266 238 371 0 0 chr13 67831984 67832054 -51912844 - L3 LINE CR1 -104 1473 1404 193 310 203 19 chr13 67832329 67832487 -51912411 - L3 LINE CR1 -458 1119 933 516 311 132 32 chr13 67832847 67833226 -51911672 - L1 LINE L1 -1554 4592 4176 350 291 152 13 chr13 67834978 67835129 -51909769 - MER5A DNA MER1_type -2 187 16 329 263 69 51 chr13 67835533 67835708 -51909190 + MLT1J LTR MaLR 306 483 -28 397 310 66 31 chr13 67835785 67836104 -51908794 - L1ME LINE L1 -552 5614 5285 232 280 70 32 chr13 67836167 67836324 -51908574 - L1ME LINE L1 -917 5229 5067 206 296 123 0 chr13 67836571 67836652 -51908246 + L3 LINE CR1 1472 1562 -15 2227 47 9 60 chr13 67839451 67839769 -51905129 - AluYa5 SINE Alu -9 302 1 348 253 40 103 chr13 67840016 67840190 -51904708 + MER5B DNA MER1_type 16 178 0 207 162 0 0 chr13 67840451 67840488 -51904410 + CT-rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr13 67840488 67840524 -51904374 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr13 67842065 67842107 -51902791 + AT_rich Low_complexity Low_complexity 1 42 0 1791 112 0 8 chr13 67843306 67843548 -51901350 + AluSx SINE Alu 44 320 0 226 108 0 0 chr13 67843548 67843585 -51901313 + (TAAAA)n Simple_repeat Simple_repeat 2 155 0 267 196 0 0 chr13 67844107 67844158 -51900740 - MLT1D LTR MaLR -414 91 41 * 2140 126 42 3 chr13 67844156 67844489 -51900409 - MSTA LTR MaLR -82 346 1 356 98 0 0 chr13 67844511 67844562 -51900336 - MLT2A1 LTR ERVL 0 444 394 207 0 0 0 chr13 67844565 67844588 -51900310 + (TG)n Simple_repeat Simple_repeat 2 24 0 235 120 20 20 chr13 67844622 67844672 -51900226 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 2422 117 60 30 chr13 67844674 67845137 -51899761 - MLT2A2 LTR ERVL -40 514 1 191 371 35 17 chr13 67845270 67845386 -51899512 + L2 LINE L2 2178 2295 -1019 218 236 79 45 chr13 67845821 67845910 -51898988 + L2 LINE L2 3222 3313 0 2381 87 3 0 chr13 67846593 67846891 -51898007 + AluSp SINE Alu 1 299 -14 23 33 0 0 chr13 67850038 67850068 -51894830 + AT_rich Low_complexity Low_complexity 1 30 0 255 293 47 28 chr13 67850073 67850179 -51894719 + MIR SINE MIR 93 200 -62 48 0 0 0 chr13 67850203 67850251 -51894647 + AT_rich Low_complexity Low_complexity 1 48 0 651 189 73 89 chr13 67850298 67850557 -51894341 - MER2 DNA MER2_type 0 345 91 1299 238 102 12 chr13 67852139 67852560 -51892338 + Charlie4a DNA MER1_type 50 508 0 1375 166 19 142 chr13 67852894 67853064 -51891834 - MER67C LTR ERV1 -232 282 280 2552 45 3 13 chr13 67853064 67853376 -51891522 - AluY SINE Alu -2 309 1 1375 166 19 142 chr13 67853376 67853620 -51891278 - MER67C LTR ERV1 -234 280 8 246 116 0 0 chr13 67853736 67853779 -51891119 + (TG)n Simple_repeat Simple_repeat 1 43 0 243 0 0 0 chr13 67855308 67855335 -51889563 + (T)n Simple_repeat Simple_repeat 1 27 0 28 71 0 0 chr13 67857005 67857061 -51887837 + AT_rich Low_complexity Low_complexity 1 56 0 1937 91 4 18 chr13 67857335 67857609 -51887289 + AluY SINE Alu 39 308 -3 403 203 0 0 chr13 67857775 67857854 -51887044 - MLT1E3 LTR MaLR 0 624 546 734 221 20 0 chr13 67857855 67858004 -51886894 - MLT1E1 LTR MaLR -499 155 4 285 303 68 31 chr13 67859875 67860037 -51884861 + MIR SINE MIR 79 246 -16 27 49 0 0 chr13 67860042 67860083 -51884815 + AT_rich Low_complexity Low_complexity 1 41 0 299 291 104 26 chr13 67860190 67860420 -51884478 - L1ME4a LINE L1 -104 6017 5770 915 185 38 0 chr13 67860433 67860590 -51884308 - AluJb SINE Alu -30 282 120 270 330 35 0 chr13 67860629 67860802 -51884096 - L1ME4a LINE L1 -2021 5787 5609 188 209 30 134 chr13 67861168 67861235 -51883663 + MIR SINE MIR 90 149 -113 3874 174 62 14 chr13 67861297 67861894 -51883004 + LTR1B LTR ERV1 1 647 -179 2189 84 20 10 chr13 67861894 67862190 -51882708 + AluSg SINE Alu 12 310 0 3874 174 62 14 chr13 67862190 67862380 -51882518 + LTR1B LTR ERV1 647 826 0 565 155 10 10 chr13 67862839 67862936 -51881962 + MER4A LTR ERV1 2 98 -566 1876 138 9 16 chr13 67862936 67863284 -51881614 + MER4A LTR ERV1 261 664 0 2339 83 0 3 chr13 67863547 67863848 -51881050 + AluSc SINE Alu 1 300 -9 363 301 80 25 chr13 67863994 67864319 -51880579 + HAL1 LINE L1 1255 1597 -910 235 358 17 35 chr13 67864425 67864598 -51880300 + REP3 LTR ERV 21 190 -372 2165 108 0 23 chr13 67864944 67865251 -51879647 - AluSg SINE Alu -2 308 9 232 274 0 41 chr13 67865295 67865368 -51879530 - MLT1L LTR MaLR -196 419 350 817 279 38 61 chr13 67866803 67867298 -51877600 - HsTC2 DNA Tc2 -64 1834 1175 3682 141 5 13 chr13 67867384 67868009 -51876889 - L1PA15 LINE L1 -2 6163 5544 6692 205 12 8 chr13 67868009 67869489 -51875409 + L1P LINE L1 2264 3749 -2397 433 248 9 18 chr13 67869504 67869613 -51875285 - HsTC2 DNA Tc2 -1788 110 3 906 199 135 11 chr13 67870140 67870422 -51874476 - MER33 DNA MER1_type -7 317 1 223 48 24 24 chr13 67870831 67870873 -51874025 + (TC)n Simple_repeat Simple_repeat 2 43 0 329 348 191 0 chr13 67871760 67871970 -51872928 - MIR SINE MIR -8 254 5 426 319 77 61 chr13 67872142 67872534 -51872364 + MLT1J LTR MaLR 72 469 -42 1124 181 14 33 chr13 67872534 67872749 -51872149 - AluJo SINE Alu -11 301 91 380 359 61 16 chr13 67874261 67874573 -51870325 + MARNA DNA Mariner 54 379 -207 551 257 62 0 chr13 67876225 67876369 -51868529 - MIR SINE MIR -14 248 96 2449 71 0 3 chr13 67876832 67877140 -51867758 + AluY SINE Alu 1 307 -4 310 277 124 56 chr13 67878168 67878913 -51865985 + L1ME3A LINE L1 2453 3279 -2867 2037 191 84 24 chr13 67878999 67879461 -51865437 + LTR2B LTR ERV1 1 490 0 42275 194 14 8 chr13 67879461 67887194 -51857704 + Harlequin LTR ERV1 1 7810 -3 1549 217 64 37 chr13 67887199 67887405 -51857493 + LTR2 LTR ERV1 1 200 -249 201 74 0 0 chr13 67887405 67887432 -51857466 + (TTCTG)n Simple_repeat Simple_repeat 2 28 0 1549 217 64 37 chr13 67887432 67887662 -51857236 + LTR2 LTR ERV1 200 449 0 334 295 36 60 chr13 67887860 67888026 -51856872 + L1ME3A LINE L1 5120 5281 -865 4543 174 14 5 chr13 67888026 67888796 -51856102 + LTR39 LTR ERV1 7 783 0 738 327 45 7 chr13 67888796 67889092 -51855806 - MLT1I LTR MaLR -39 370 63 399 316 65 25 chr13 67889177 67889500 -51855398 + L1ME3A LINE L1 5364 5699 -471 26 93 0 0 chr13 67889505 67889580 -51855318 + AT_rich Low_complexity Low_complexity 1 75 0 353 353 20 0 chr13 67889643 67889793 -51855105 + L1ME3A LINE L1 5785 5937 -233 1794 102 84 7 chr13 67889889 67890163 -51854735 + AluSx SINE Alu 3 297 -15 208 143 0 0 chr13 67892816 67892851 -51852047 + (A)n Simple_repeat Simple_repeat 1 35 0 31 0 0 0 chr13 67894157 67894188 -51850710 + AT_rich Low_complexity Low_complexity 1 31 0 1794 207 28 0 chr13 67895523 67895875 -51849023 - MLT1A1 LTR MaLR 0 365 4 26 50 0 0 chr13 67896178 67896218 -51848680 + AT_rich Low_complexity Low_complexity 1 40 0 313 179 11 21 chr13 67896503 67896598 -51848300 + GA-rich Low_complexity Low_complexity 2 95 0 319 257 48 29 chr13 67897311 67897416 -51847482 + L1MEd LINE L1 999 1105 -5014 938 228 198 96 chr13 67897431 67898370 -51846528 + MER52A LTR ERV1 3 1755 0 317 297 30 10 chr13 67899817 67899918 -51844980 - L1MC4 LINE L1 -2 8040 7938 6982 60 11 0 chr13 67899919 67901307 -51843591 - L1PA7 LINE L1 -2 6152 4756 207 114 0 0 chr13 67901534 67901569 -51843329 + (ATG)n Simple_repeat Simple_repeat 2 36 0 261 185 0 46 chr13 67902406 67902514 -51842384 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 2547 175 15 0 chr13 67902537 67902993 -51841905 + MLT1C LTR MaLR 1 463 -4 253 289 26 13 chr13 67903256 67903332 -51841566 - L3 LINE CR1 -19 1558 1482 23 0 0 0 chr13 67904252 67904275 -51840623 + AT_rich Low_complexity Low_complexity 1 23 0 217 297 0 14 chr13 67905598 67905672 -51839226 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 304 282 0 7 chr13 67905891 67906008 -51838890 + MIR SINE MIR 6 198 -64 267 79 0 0 chr13 67906236 67906274 -51838624 + (TC)n Simple_repeat Simple_repeat 2 39 0 201 158 37 0 chr13 67906273 67906355 -51838543 + (TA)n Simple_repeat Simple_repeat 2 86 0 * 296 376 74 0 chr13 67906513 67906662 -51838236 - L2 LINE L2 -470 2844 2685 1997 155 35 16 chr13 67907287 67907655 -51837243 - THE1C LTR MaLR 0 375 1 26 50 0 0 chr13 67907827 67907867 -51837031 + AT_rich Low_complexity Low_complexity 1 40 0 1512 187 46 23 chr13 67907957 67908262 -51836636 - AluJo SINE Alu 0 312 1 25 0 0 0 chr13 67908374 67908399 -51836499 + AT_rich Low_complexity Low_complexity 1 25 0 2332 156 10 3 chr13 67908829 67910204 -51834694 - L1MA1 LINE L1 0 6302 4835 1994 139 30 0 chr13 67910221 67910522 -51834376 - AluSx SINE Alu 0 312 3 3176 134 52 54 chr13 67910916 67911330 -51833568 + MER4B LTR ERV1 1 415 -195 2254 82 3 13 chr13 67911330 67911634 -51833264 - AluY SINE Alu -10 301 1 3176 134 52 54 chr13 67911634 67911830 -51833068 + MER4B LTR ERV1 415 610 0 2970 246 179 39 chr13 67912252 67913028 -51831870 - L1MC4 LINE L1 0 8042 7377 189 0 0 0 chr13 67913028 67913049 -51831849 + (TA)n Simple_repeat Simple_repeat 1 21 0 2970 246 179 39 chr13 67913049 67913411 -51831487 - L1MC4 LINE L1 -665 7377 7067 195 100 0 0 chr13 67913411 67913441 -51831457 + (TA)n Simple_repeat Simple_repeat 1 30 0 2970 246 179 39 chr13 67913441 67913772 -51831126 - L1MC4 LINE L1 -975 7067 6365 1056 258 33 11 chr13 67913890 67914254 -51830644 - L1ME2 LINE L1 -221 5943 5572 1900 272 139 45 chr13 67914267 67915415 -51829483 - L1ME2 LINE L1 -908 5238 3900 697 153 7 58 chr13 67915415 67915552 -51829346 - FLAM_C SINE Alu -3 130 1 1900 272 139 45 chr13 67915552 67915979 -51828919 - L1ME2 LINE L1 -2246 3900 3515 2022 81 37 0 chr13 67916425 67916733 -51828165 - AluY SINE Alu 0 318 1 28 0 0 0 chr13 67916848 67916876 -51828022 + AT_rich Low_complexity Low_complexity 1 28 0 1660 157 106 15 chr13 67917149 67917480 -51827418 + MER46B DNA MER2_type 1 236 0 252 86 0 0 chr13 67917662 67917697 -51827201 + (TTATA)n Simple_repeat Simple_repeat 3 37 0 285 0 0 0 chr13 67921302 67921335 -51823563 + MER58A DNA MER1_type 46 78 -29 420 296 62 6 chr13 67922480 67922642 -51822256 - MIR SINE MIR 0 262 92 2234 90 0 0 chr13 67923529 67923840 -51821058 + AluSg SINE Alu 1 311 0 25 31 0 0 chr13 67923896 67923928 -51820970 + AT_rich Low_complexity Low_complexity 1 32 0 1865 153 26 3 chr13 67923928 67924275 -51820623 - L1MA4 LINE L1 -9 6291 5937 493 330 8 42 chr13 67924295 67924534 -51820364 + L2 LINE L2 2579 2809 -505 1921 248 18 90 chr13 67926737 67926803 -51818095 - MLT1E3 LTR MaLR -8 618 549 1787 109 42 42 chr13 67926803 67927086 -51817812 + AluSx SINE Alu 8 290 -22 1921 248 18 90 chr13 67927086 67927679 -51817219 - MLT1E3 LTR MaLR -77 549 2 23 33 0 0 chr13 67927840 67927870 -51817028 + AT_rich Low_complexity Low_complexity 1 30 0 282 353 112 16 chr13 67927981 67928230 -51816668 - L2 LINE L2 -33 3280 3008 306 0 0 0 chr13 67928518 67928552 -51816346 + (CA)n Simple_repeat Simple_repeat 1 34 0 851 281 30 4 chr13 67928552 67928783 -51816115 - MIR SINE MIR -24 238 2 1799 253 72 36 chr13 67929389 67929746 -51815152 + L1ME2 LINE L1 4143 4486 -1678 1685 223 30 15 chr13 67929746 67930150 -51814748 - MLT2D LTR ERVL -4 410 1 1799 253 72 36 chr13 67930150 67930589 -51814309 + L1ME2 LINE L1 4486 4908 -1256 2187 125 0 0 chr13 67930589 67930894 -51814004 - AluSx SINE Alu -7 305 1 1799 253 72 36 chr13 67930894 67931836 -51813062 + L1ME2 LINE L1 4908 5946 -218 216 0 0 0 chr13 67931886 67931910 -51812988 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6444 69 5 1 chr13 67931944 67932788 -51812110 - L1PA8A LINE L1 -31 6100 5254 355 241 15 45 chr13 67932794 67932927 -51811971 + L1ME2 LINE L1 6036 6164 0 35 18 0 35 chr13 67933426 67933455 -51811443 + AT_rich Low_complexity Low_complexity 1 29 -26 1710 155 40 0 chr13 67933455 67933733 -51811165 + AluSx SINE Alu 1 289 -23 35 18 0 35 chr13 67933733 67933760 -51811138 + AT_rich Low_complexity Low_complexity 29 55 0 26626 97 6 19 chr13 67934033 67937944 -51806954 + L1PA6 LINE L1 11 3873 -2273 8081 59 6 0 chr13 67937944 67939747 -51805151 + L1PA6 LINE L1 4339 6147 -7 31 58 0 0 chr13 67939941 67939993 -51804905 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr13 67940927 67940950 -51803948 + AT_rich Low_complexity Low_complexity 1 23 0 630 100 30 0 chr13 67941590 67941690 -51803208 + L1MC1 LINE L1 6231 6333 0 1965 129 13 3 chr13 67941888 67942198 -51802700 - AluSq SINE Alu 0 313 1 251 213 0 0 chr13 67942321 67942368 -51802530 - MIR SINE MIR 0 262 216 258 222 37 25 chr13 67942466 67942547 -51802351 - MIR SINE MIR 0 262 181 225 330 89 0 chr13 67942568 67942680 -51802218 - MIR SINE MIR -30 232 111 227 287 79 10 chr13 67943301 67943402 -51801496 + MIR SINE MIR 84 191 -71 1219 219 0 0 chr13 67943879 67944098 -51800800 - MER58A DNA MER1_type -1 223 5 22 0 0 0 chr13 67944870 67944892 -51800006 + AT_rich Low_complexity Low_complexity 1 22 0 3619 256 106 36 chr13 67945663 67948314 -51796584 - L1MCa LINE L1 -2368 4196 1248 1319 294 43 24 chr13 67948426 67948978 -51795920 - L1MCa LINE L1 -5480 565 3 2018 148 0 0 chr13 67949406 67949703 -51795195 - AluSx SINE Alu -15 297 1 1615 176 18 4 chr13 67951301 67951580 -51793318 - AluJb SINE Alu -21 291 9 235 402 0 0 chr13 67952398 67952495 -51792403 + MIR SINE MIR 44 140 -68 4906 108 44 34 chr13 67953193 67953455 -51791443 - THE1B-int LTR MaLR -804 776 518 4533 45 2 2 chr13 67953455 67954015 -51790883 + L1PA4 LINE L1 5593 6152 -3 4906 108 44 34 chr13 67954015 67954519 -51790379 - THE1B-int LTR MaLR -1062 518 2 1623 157 116 36 chr13 67954520 67954857 -51790041 - THE1B LTR MaLR 0 364 1 2059 154 6 16 chr13 67954857 67955221 -51789677 - L1PB4 LINE L1 -91 6065 5706 418 204 10 20 chr13 67955221 67955319 -51789579 - LTR52 LTR ERVL -324 97 1 23 0 0 0 chr13 67955997 67956020 -51788878 + AT_rich Low_complexity Low_complexity 1 23 0 824 137 8 0 chr13 67956748 67956872 -51788026 - AluJb SINE Alu -187 125 1 21 36 0 0 chr13 67957861 67957889 -51787009 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 67958488 67958510 -51786388 + AT_rich Low_complexity Low_complexity 1 22 0 1510 147 66 35 chr13 67958641 67958927 -51785971 - MSTB1 LTR MaLR -137 295 1 6926 236 31 8 chr13 67958927 67960528 -51784370 - MSTB1-int LTR MaLR 0 1651 14 2137 156 89 3 chr13 67960540 67960931 -51783967 - MSTB1 LTR MaLR 0 432 8 36 0 0 0 chr13 67962446 67962482 -51782416 + AT_rich Low_complexity Low_complexity 1 36 0 2031 160 40 0 chr13 67962608 67962958 -51781940 + THE1B LTR MaLR 1 364 0 262 212 12 12 chr13 67963326 67963411 -51781487 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 198 164 178 41 chr13 67963433 67963506 -51781392 - MIR SINE MIR -74 188 106 310 282 51 0 chr13 67963535 67963652 -51781246 + MER94 DNA DNA 3 125 -9 341 366 112 17 chr13 67963815 67964324 -51780574 - L2 LINE L2 -16 3297 2734 4126 306 132 46 chr13 67964389 67967214 -51777684 - L2 LINE L2 -246 3067 4 371 331 69 11 chr13 67967449 67967624 -51777274 - L2 LINE L2 -594 2720 2536 4194 216 44 8 chr13 67967624 67968580 -51776318 - Tigger6a DNA MER2_type 0 1083 94 1891 154 17 34 chr13 67969393 67969750 -51775148 - THE1A LTR MaLR 0 355 5 10355 97 43 20 chr13 67969754 67971298 -51773600 - THE1A-int LTR MaLR 0 1580 1 1352 134 17 13 chr13 67971298 67971575 -51773323 - THE1A LTR MaLR 0 364 1 230 321 127 62 chr13 67972219 67972605 -51772293 + L2 LINE L2 2841 3251 -62 221 219 49 24 chr13 67972650 67972732 -51772166 + GA-rich Low_complexity Low_complexity 1 84 0 208 374 65 8 chr13 67972888 67973011 -51771887 + L2 LINE L2 3141 3270 -2 1736 227 127 11 chr13 67974707 67975156 -51769742 + MLT1D LTR MaLR 1 501 -4 334 343 40 15 chr13 67975204 67975402 -51769496 - MIR SINE MIR -24 238 36 22 0 0 0 chr13 67977209 67977231 -51767667 + AT_rich Low_complexity Low_complexity 1 22 0 828 284 122 37 chr13 67978040 67978525 -51766373 + L1ME3A LINE L1 5601 6126 -44 22 35 0 0 chr13 67979605 67979634 -51765264 + AT_rich Low_complexity Low_complexity 1 29 0 5052 171 27 16 chr13 67979642 67981186 -51763712 - L1MA7 LINE L1 -2 6493 4930 444 187 11 0 chr13 67981192 67981283 -51763615 - L1MA7 LINE L1 -3726 2624 2533 2279 206 27 69 chr13 67981336 67981961 -51762937 - LTR9 LTR ERV1 -13 599 1 517 384 34 15 chr13 67981967 67982235 -51762663 - L1MA7 LINE L1 -5115 1166 894 13989 218 31 9 chr13 67982644 67986524 -51758374 - L1 LINE L1 -2324 4524 3 180 111 0 0 chr13 67987457 67987484 -51757414 + (ATG)n Simple_repeat Simple_repeat 1 27 0 216 0 0 0 chr13 67989039 67989063 -51755835 + (A)n Simple_repeat Simple_repeat 1 24 0 203 378 39 26 chr13 67990383 67990539 -51754359 + L3 LINE CR1 1338 1495 -82 411 38 0 0 chr13 67990893 67990946 -51753952 + (TA)n Simple_repeat Simple_repeat 1 53 0 1732 157 10 7 chr13 67990946 67991239 -51753659 - AluSx SINE Alu -16 296 3 843 290 98 3 chr13 67991481 67991998 -51752900 + HERVL40 LTR ERVL 3436 4054 -1476 327 266 62 72 chr13 67992027 67992214 -51752684 + L1M4 LINE L1 4468 4655 -1491 1993 151 0 0 chr13 67992214 67992506 -51752392 + AluSx SINE Alu 1 292 -20 327 266 62 72 chr13 67992506 67992705 -51752193 + L1M4 LINE L1 4655 4850 -1296 1643 198 0 3 chr13 67992957 67993245 -51751653 + AluJo SINE Alu 1 287 -25 1990 132 0 0 chr13 67993307 67993588 -51751310 + AluSx SINE Alu 1 281 -31 2541 68 0 0 chr13 67993737 67994048 -51750850 + AluY SINE Alu 1 311 0 21 0 0 0 chr13 67994371 67994392 -51750506 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 67996144 67996174 -51748724 + AT_rich Low_complexity Low_complexity 1 30 0 31 76 0 0 chr13 67996185 67996251 -51748647 + AT_rich Low_complexity Low_complexity 1 66 0 475 217 0 0 chr13 67996384 67996476 -51748422 - FLAM_A SINE Alu -15 127 36 225 297 81 45 chr13 67996538 67996649 -51748249 + MIR SINE MIR 85 199 -63 286 267 83 91 chr13 67996955 67997330 -51747568 - Charlie7 DNA MER1_type -286 2326 1955 6494 48 2 1 chr13 67997330 67998130 -51746768 - L1PA5 LINE L1 -6 6148 5348 790 278 103 49 chr13 67998196 67998750 -51746148 - Charlie7 DNA MER1_type -687 1925 1342 781 302 129 24 chr13 67998745 67999281 -51745617 - Charlie7 DNA MER1_type -1973 639 48 * 22 0 0 0 chr13 68001491 68001513 -51743385 + AT_rich Low_complexity Low_complexity 1 22 0 235 355 61 12 chr13 68001710 68001856 -51743042 - MIR3 SINE MIR -65 143 3 21 0 0 0 chr13 68002568 68002589 -51742309 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 68004638 68004659 -51740239 + AT_rich Low_complexity Low_complexity 1 21 0 368 264 97 89 chr13 68004681 68005210 -51739688 + L1ME LINE L1 4904 5440 -724 21 0 0 0 chr13 68005379 68005400 -51739498 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 68005406 68005427 -51739471 + AT_rich Low_complexity Low_complexity 1 21 0 260 339 33 8 chr13 68007220 68007341 -51737557 + L2 LINE L2 1870 1993 -1321 312 309 119 16 chr13 68007531 68007725 -51737173 + L1ME LINE L1 728 941 -5589 255 61 0 0 chr13 68007753 68007786 -51737112 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1291 83 42 0 chr13 68007787 68007980 -51736918 - L1PA11 LINE L1 -10 6164 5964 240 290 53 8 chr13 68008168 68008299 -51736599 + L1ME LINE L1 999 1135 -5395 861 282 12 8 chr13 68008303 68008551 -51736347 - L1MC4a LINE L1 -1350 6458 6210 883 247 107 95 chr13 68008553 68009532 -51735366 + L1ME LINE L1 1105 2075 -4465 1467 293 51 12 chr13 68009575 68010247 -51734651 + L1M4 LINE L1 4187 4884 -1262 543 302 47 47 chr13 68010286 68010584 -51734314 + ERVL LTR ERVL 4365 4662 -1102 874 120 24 54 chr13 68010585 68010752 -51734146 + AluJb SINE Alu 64 225 -87 320 325 57 16 chr13 68010767 68010890 -51734008 + ERVL LTR ERVL 4617 4744 -910 1063 299 103 23 chr13 68011027 68011552 -51733346 + ERVL LTR ERVL 5009 5575 -189 27 0 0 0 chr13 68012748 68012775 -51732123 + AT_rich Low_complexity Low_complexity 1 27 0 1876 114 0 76 chr13 68012842 68013159 -51731739 + AluSx SINE Alu 1 293 -19 252 0 0 0 chr13 68013162 68013190 -51731708 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 419 350 32 36 chr13 68013933 68014153 -51730745 + MIR SINE MIR 27 245 -17 253 315 86 35 chr13 68014448 68014705 -51730193 - L1ME4a LINE L1 -202 5919 5650 2586 29 0 13 chr13 68014852 68015164 -51729734 - AluY SINE Alu -3 308 1 1663 183 10 0 chr13 68015164 68015454 -51729444 - AluJb SINE Alu -19 293 1 380 316 53 32 chr13 68015957 68016144 -51728754 + MIR SINE MIR 1 191 -71 258 56 0 0 chr13 68016601 68016637 -51728261 + (T)n Simple_repeat Simple_repeat 1 36 0 208 335 16 109 chr13 68016979 68017227 -51727671 - L2 LINE L2 -93 3179 2955 2577 212 10 2 chr13 68017435 68017930 -51726968 + Tigger1 DNA MER2_type 3 501 -1917 812 152 7 7 chr13 68017921 68018059 -51726839 + Tigger1 DNA MER2_type 1948 2085 -333 * 337 123 0 62 chr13 68018413 68018478 -51726420 + Tigger1 DNA MER2_type 2078 2138 -280 1812 170 3 0 chr13 68118990 68119284 -51625614 - AluJb SINE Alu -17 295 1 231 36 0 0 chr13 68119360 68119388 -51625510 + (TA)n Simple_repeat Simple_repeat 2 29 0 746 230 52 68 chr13 68120609 68120861 -51624037 + MER67C LTR ERV1 10 257 -453 1463 237 51 20 chr13 68120863 68121367 -51623531 + LTR28 LTR ERV1 1 1231 -137 * 2522 173 9 7 chr13 68121364 68121820 -51623078 + MER67C LTR ERV1 254 710 0 1239 80 0 18 chr13 68122329 68122492 -51622406 - AluY SINE Alu -19 292 133 2082 61 7 11 chr13 68122492 68122769 -51622129 - AluY SINE Alu 0 311 36 13258 155 28 12 chr13 68122817 68125162 -51619736 + Tigger1 DNA MER2_type 1 2382 -36 23 33 0 0 chr13 68125405 68125435 -51619463 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 68125623 68125652 -51619246 + AT_rich Low_complexity Low_complexity 1 29 0 290 274 79 74 chr13 68125656 68126075 -51618823 + L1M4 LINE L1 4507 4927 -1219 247 344 47 21 chr13 68126870 68127062 -51617836 - L2 LINE L2 -985 2329 2133 5376 168 57 8 chr13 68127268 68129028 -51615870 - L1PBa LINE L1 -2727 4135 2288 3686 88 6 0 chr13 68129016 68129541 -51615357 + L1P5 LINE L1 5264 5791 -360 * 216 200 0 0 chr13 68129548 68129593 -51615305 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr13 68131057 68131085 -51613813 + AT_rich Low_complexity Low_complexity 1 28 0 2724 79 3 0 chr13 68131381 68131735 -51613163 + THE1A LTR MaLR 1 355 0 10947 116 4 1 chr13 68131735 68133311 -51611587 + THE1A-int LTR MaLR 1 1580 0 2542 112 3 0 chr13 68133316 68133663 -51611235 + THE1A LTR MaLR 6 353 -2 249 399 37 0 chr13 68133667 68133830 -51611068 + MIR SINE MIR 5 173 -89 648 228 38 42 chr13 68133832 68134069 -51610829 - LTR37B LTR ERV1 -2 466 231 742 86 0 0 chr13 68134069 68134174 -51610724 + L1PB1 LINE L1 6043 6147 -4 37 0 0 0 chr13 68134177 68134214 -51610684 + AT_rich Low_complexity Low_complexity 1 37 0 339 274 83 85 chr13 68134641 68135217 -51609681 - MER31-int LTR ERV1 -870 4066 3492 295 73 0 0 chr13 68135245 68135286 -51609612 + MLT1E2 LTR MaLR 586 626 0 604 323 95 9 chr13 68135300 68135625 -51609273 + L1MEc LINE L1 66 418 -5978 239 70 0 23 chr13 68138360 68138403 -51606495 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 2246 105 0 0 chr13 68139433 68139739 -51605159 - AluSx SINE Alu -5 307 2 842 283 145 21 chr13 68139909 68140419 -51604479 + MLT1F1 LTR MaLR 1 593 0 991 283 13 21 chr13 68140421 68140920 -51603978 + MLT1F1-int LTR MaLR 3 612 -759 514 266 33 160 chr13 68141156 68141701 -51603197 + MLT1F1-int LTR MaLR 692 1167 -204 710 427 65 49 chr13 68142043 68142570 -51602328 + MLT1F LTR MaLR 1 535 -7 29 47 0 0 chr13 68142600 68142643 -51602255 + AT_rich Low_complexity Low_complexity 1 43 0 1791 181 2 94 chr13 68144504 68144907 -51599991 + MSTB1 LTR MaLR 3 368 -64 6815 234 52 8 chr13 68144953 68146523 -51598375 + MSTB1-int LTR MaLR 1 1639 -12 2229 166 19 28 chr13 68146523 68146956 -51597942 + MSTB1 LTR MaLR 1 429 -3 22 35 0 0 chr13 68147287 68147316 -51597582 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr13 68147811 68147834 -51597064 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 498 33 0 0 chr13 68149613 68149673 -51595225 + (CA)n Simple_repeat Simple_repeat 2 61 0 2558 183 20 22 chr13 68150819 68151404 -51593494 - LTR60 LTR ERV1 -2 584 1 458 109 297 0 chr13 68152945 68153046 -51591852 - L1MA9 LINE L1 -2 6310 6180 741 224 10 51 chr13 68153930 68154126 -51590772 - MER4C LTR ERV1 0 465 278 340 200 96 42 chr13 68154134 68154284 -51590614 - MER4C LTR ERV1 -201 264 178 1225 148 49 88 chr13 68154285 68154590 -51590308 - MER4A LTR ERV1 -367 297 5 285 372 62 0 chr13 68154591 68154720 -51590178 - L3 LINE CR1 -419 1158 1022 549 306 46 42 chr13 68154735 68155042 -51589856 - MLT1H LTR MaLR -15 534 227 602 227 67 49 chr13 68155049 68155341 -51589557 + L1MA9 LINE L1 6011 6312 0 317 257 18 46 chr13 68155613 68155722 -51589176 + MIR SINE MIR 147 252 -10 338 134 15 0 chr13 68156440 68156507 -51588391 + T-rich Low_complexity Low_complexity 2 69 0 25 0 0 0 chr13 68156665 68156690 -51588208 + AT_rich Low_complexity Low_complexity 1 25 0 486 0 0 0 chr13 68156747 68156801 -51588097 + (TA)n Simple_repeat Simple_repeat 1 54 0 1098 240 101 19 chr13 68156801 68157118 -51587780 + MER2 DNA MER2_type 3 345 0 4154 188 36 25 chr13 68157118 68158028 -51586870 - L1MA9 LINE L1 -83 6229 5310 212 143 24 0 chr13 68158030 68158072 -51586826 + (TA)n Simple_repeat Simple_repeat 1 43 0 396 0 0 0 chr13 68158084 68158141 -51586757 + (TA)n Simple_repeat Simple_repeat 1 101 0 396 0 0 0 chr13 68158141 68158185 -51586713 + (TA)n Simple_repeat Simple_repeat 1 44 0 336 245 106 86 chr13 68158386 68158531 -51586367 - L1MEd LINE L1 -5077 1042 889 1994 119 10 3 chr13 68158531 68158825 -51586073 - AluY SINE Alu -15 296 1 336 245 106 86 chr13 68158825 68158924 -51585974 - L1MEd LINE L1 -5230 889 793 323 168 19 19 chr13 68161192 68161299 -51583599 + (TA)n Simple_repeat Simple_repeat 2 108 0 24 0 0 0 chr13 68161370 68161394 -51583504 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr13 68161936 68161968 -51582930 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 68162372 68162395 -51582503 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 68162763 68162785 -51582113 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 68162860 68162881 -51582017 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr13 68164074 68164121 -51580777 + (CAG)n Simple_repeat Simple_repeat 2 48 0 390 347 46 53 chr13 68165113 68165824 -51579074 + ERVL LTR ERVL 829 1534 -4230 252 0 0 0 chr13 68167655 68167683 -51577215 + (TGG)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr13 68167991 68168019 -51576879 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 68168919 68168940 -51575958 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr13 68171381 68171418 -51573480 + (TA)n Simple_repeat Simple_repeat 1 37 0 206 174 0 22 chr13 68171420 68171466 -51573432 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr13 68172304 68172325 -51572573 + AT_rich Low_complexity Low_complexity 1 21 0 183 312 64 28 chr13 68172445 68172520 -51572378 + MIR SINE MIR 72 154 -108 1365 188 38 20 chr13 68172520 68172813 -51572085 + AluJo SINE Alu 1 298 -14 183 312 64 28 chr13 68172813 68172846 -51572052 + MIR SINE MIR 154 184 -78 22 0 0 0 chr13 68174061 68174083 -51570815 + AT_rich Low_complexity Low_complexity 1 22 0 4069 252 44 26 chr13 68174358 68176147 -51568751 + L1M1 LINE L1 14 2513 -5052 607 218 39 0 chr13 68176155 68176311 -51568587 + L1M1 LINE L1 2985 3146 -4419 23 33 0 0 chr13 68176565 68176595 -51568303 + AT_rich Low_complexity Low_complexity 1 30 0 2750 179 61 31 chr13 68176972 68177691 -51567207 - LTR1 LTR ERV1 0 785 12 456 199 0 135 chr13 68179086 68179227 -51565671 + MER92B LTR ERV1 5 126 -510 261 186 68 0 chr13 68179344 68179403 -51565495 + MER92C LTR ERV1 492 554 0 2316 167 54 58 chr13 68180968 68181484 -51563414 - LTR9 LTR ERV1 -98 514 1 25 83 0 0 chr13 68182624 68182684 -51562214 + AT_rich Low_complexity Low_complexity 1 60 0 1135 224 144 93 chr13 68183437 68184272 -51560626 + L1MCa LINE L1 1116 1992 -4434 2798 198 30 2 chr13 68184370 68184942 -51559956 + L1MC3 LINE L1 7139 7726 -59 42 57 0 0 chr13 68185556 68185626 -51559272 + AT_rich Low_complexity Low_complexity 1 70 0 371 307 109 48 chr13 68185769 68186228 -51558670 - L1M4 LINE L1 -2275 3871 3385 578 270 54 0 chr13 68186247 68186469 -51558429 + L1ME1 LINE L1 5723 5956 -210 239 30 0 0 chr13 68187157 68187190 -51557708 + Alu SINE Alu 261 293 -8 319 333 56 14 chr13 68187926 68188070 -51556828 + MIR SINE MIR 34 183 -79 238 216 20 0 chr13 68188605 68188656 -51556242 + MLT1K LTR MaLR 158 209 -379 1988 217 30 13 chr13 68189245 68189720 -51555178 + MLT1-int LTR MaLR 197 679 -692 2067 101 0 39 chr13 68189846 68190153 -51554745 - AluSg SINE Alu -11 299 5 551 250 66 35 chr13 68190162 68190390 -51554508 - L1ME LINE L1 -609 5555 5321 723 221 54 36 chr13 68191003 68191281 -51553617 + LTR38B LTR ERV1 1 339 -271 1327 300 24 4 chr13 68191282 68191749 -51553149 - L1PA12 LINE L1 -4923 2658 2183 225 378 0 0 chr13 68191985 68192083 -51552815 - L1PA12 LINE L1 -5401 2180 2083 1828 244 66 19 chr13 68193811 68194404 -51550494 + L1MCb LINE L1 570 1190 -4855 1422 115 0 0 chr13 68194404 68194595 -51550303 + AluSx SINE Alu 1 191 -121 525 319 47 21 chr13 68195309 68195544 -51549354 - MIR SINE MIR 0 262 22 327 317 85 60 chr13 68196286 68196605 -51548293 + L2 LINE L2 1688 2014 -1300 24 53 0 0 chr13 68197016 68197054 -51547844 + AT_rich Low_complexity Low_complexity 1 38 0 1447 192 23 89 chr13 68197054 68197481 -51547417 - L1MA9 LINE L1 -31 6281 5883 383 271 106 18 chr13 68197853 68198023 -51546875 - L1MC4 LINE L1 -141 7901 7717 23 54 0 0 chr13 68198062 68198099 -51546799 + AT_rich Low_complexity Low_complexity 1 37 0 1141 295 49 18 chr13 68198101 68198671 -51546227 - L1MC5 LINE L1 -371 7590 7003 466 180 40 10 chr13 68198795 68198895 -51546003 - MER67D LTR ERV1 -411 103 1 285 295 67 47 chr13 68199764 68199957 -51544941 - LTR33 LTR ERVL -67 454 258 23 33 0 0 chr13 68200249 68200279 -51544619 + AT_rich Low_complexity Low_complexity 1 30 0 2073 122 17 0 chr13 68200299 68200594 -51544304 + AluSx SINE Alu 1 300 -12 3006 143 45 31 chr13 68200597 68200759 -51544139 - L1MA4 LINE L1 -22 6278 6120 1931 108 0 32 chr13 68200759 68201038 -51543860 + AluSc SINE Alu 1 270 -39 1383 46 0 0 chr13 68201038 68201213 -51543685 + (GGAA)n Simple_repeat Simple_repeat 2 176 0 3006 143 45 31 chr13 68201213 68201621 -51543277 - L1MA4 LINE L1 -179 6121 5699 23 54 0 0 chr13 68201974 68202011 -51542887 + AT_rich Low_complexity Low_complexity 1 37 0 922 277 99 53 chr13 68204641 68205208 -51539690 - MLT1E LTR MaLR 0 593 1 272 317 30 0 chr13 68206117 68206218 -51538680 + MIR SINE MIR 48 151 -111 2355 120 0 6 chr13 68207137 68207496 -51537402 + L1PB1 LINE L1 5794 6150 -1 184 154 0 77 chr13 68207768 68207807 -51537091 - L2 LINE L2 -11 3302 3267 * 479 286 54 0 chr13 68207778 68207925 -51536973 - MIR SINE MIR -12 250 96 458 253 0 0 chr13 68208158 68208241 -51536657 - MER5A DNA MER1_type -83 106 24 304 273 0 11 chr13 68208652 68208740 -51536158 - MIR SINE MIR -1 261 175 703 223 100 26 chr13 68208893 68209122 -51535776 + LTR37B LTR ERV1 223 468 0 1390 256 72 32 chr13 68209202 68209701 -51535197 - LTR40a LTR ERVL 0 519 1 42537 34 21 3 chr13 68210476 68216516 -51528382 - L1PA2 LINE L1 0 6155 4 22 80 0 0 chr13 68216847 68216897 -51528001 + AT_rich Low_complexity Low_complexity 1 50 0 1942 210 61 15 chr13 68217559 68218017 -51526881 - MLT1D LTR MaLR 0 505 27 991 248 70 59 chr13 68218098 68218169 -51526729 - MLT1E LTR MaLR 0 593 524 2309 62 3 0 chr13 68218169 68218457 -51526441 + AluY SINE Alu 9 297 -14 991 248 70 59 chr13 68218457 68218763 -51526135 - MLT1E LTR MaLR -69 524 210 685 283 15 7 chr13 68218959 68219231 -51525667 - L1MEc LINE L1 -5305 1091 818 25 0 0 0 chr13 68220534 68220559 -51524339 + AT_rich Low_complexity Low_complexity 1 25 0 4527 209 44 5 chr13 68220613 68221503 -51523395 + L1PB1 LINE L1 19 943 -6622 11825 203 32 55 chr13 68221503 68221654 -51523244 + L1PB1 LINE L1 2299 2452 -5118 2367 77 0 3 chr13 68221654 68221952 -51522946 + AluY SINE Alu 1 297 -14 11825 203 32 55 chr13 68221952 68224087 -51520811 + L1PB1 LINE L1 2452 4635 -2935 195 69 0 0 chr13 68224087 68224116 -51520782 + (CAA)n Simple_repeat Simple_repeat 2 30 0 11825 203 32 55 chr13 68224116 68224812 -51520086 + L1PB1 LINE L1 4635 5346 -2224 234 0 0 0 chr13 68224812 68224838 -51520060 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 11825 203 32 55 chr13 68224838 68226401 -51518497 + L1PB1 LINE L1 5346 7238 -332 387 41 0 0 chr13 68226401 68226450 -51518448 + (CA)n Simple_repeat Simple_repeat 2 50 0 11825 203 32 55 chr13 68226450 68226776 -51518122 + L1PB1 LINE L1 7238 7570 0 478 262 21 7 chr13 68226799 68226940 -51517958 + Charlie2 DNA MER1_type 2130 2272 -590 22 0 0 0 chr13 68226940 68226962 -51517936 + AT_rich Low_complexity Low_complexity 1 22 0 8634 168 19 11 chr13 68226972 68229761 -51515137 + L1MA2 LINE L1 3492 6304 0 460 324 40 57 chr13 68229868 68230269 -51514629 + L1ME4a LINE L1 5560 5953 -168 907 146 0 0 chr13 68230395 68230532 -51514366 - L1PA10 LINE L1 -240 5928 5792 1406 104 32 23 chr13 68230532 68230751 -51514147 + L1PA10 LINE L1 5929 6150 -18 40 37 0 0 chr13 68230751 68230805 -51514093 + AT_rich Low_complexity Low_complexity 1 54 0 356 233 0 27 chr13 68231242 68231343 -51513555 + MER92B LTR ERV1 1 582 -54 2269 148 6 6 chr13 68231718 68232082 -51512816 + THE1B LTR MaLR 1 364 0 231 250 24 0 chr13 68232280 68232364 -51512534 - L1MC4 LINE L1 -1339 6703 6618 231 196 0 0 chr13 68232584 68232630 -51512268 + MIR SINE MIR 107 152 -110 192 222 0 0 chr13 68233276 68233312 -51511586 - L2 LINE L2 -978 2336 2301 353 274 0 0 chr13 68233576 68233660 -51511238 + MER89 LTR ERV1 1 84 -475 * 1347 211 80 36 chr13 68233638 68233975 -51510923 + MER89 LTR ERV1 197 548 -11 331 273 81 41 chr13 68234042 68234214 -51510684 + MER90 LTR ERV1 436 614 0 430 309 70 41 chr13 68234305 68234548 -51510350 - MIR SINE MIR -5 257 8 239 327 40 40 chr13 68234541 68234691 -51510207 - L2 LINE L2 -1344 1970 1821 * 35 0 0 0 chr13 68235696 68235731 -51509167 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr13 68235767 68235798 -51509100 + (TG)n Simple_repeat Simple_repeat 2 32 0 240 111 0 0 chr13 68237085 68237130 -51507768 + (ATG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr13 68237591 68237612 -51507286 + AT_rich Low_complexity Low_complexity 1 21 0 711 237 12 90 chr13 68238838 68239083 -51505815 - L1MA9 LINE L1 -6 6285 6060 * 927 186 19 178 chr13 68239079 68239600 -51505298 + L1MA9 LINE L1 5635 6005 -178 2338 201 33 74 chr13 68240781 68241419 -51503479 - LTR9 LTR ERV1 0 612 1 1877 205 74 42 chr13 68241652 68242150 -51502748 - MER67D LTR ERV1 0 514 1 475 312 89 5 chr13 68242255 68242457 -51502441 - MIR SINE MIR -13 249 31 213 348 72 50 chr13 68243145 68243366 -51501532 + L3 LINE CR1 1233 1458 -119 255 376 82 29 chr13 68243616 68243959 -51500939 + L3 LINE CR1 1194 1554 -23 180 241 56 0 chr13 68243928 68243982 -51500916 + MIR3 SINE MIR 150 206 -2 * 28 71 0 0 chr13 68244504 68244560 -51500338 + AT_rich Low_complexity Low_complexity 1 56 0 229 356 48 0 chr13 68244957 68245061 -51499837 - MIR SINE MIR 0 262 154 223 381 16 8 chr13 68245234 68245360 -51499538 - L2 LINE L2 -479 2835 2709 297 318 22 119 chr13 68245361 68245773 -51499125 - L2 LINE L2 -137 3176 2805 204 216 0 0 chr13 68246633 68246684 -51498214 + (CA)n Simple_repeat Simple_repeat 2 52 0 1619 207 28 33 chr13 68246774 68247166 -51497732 + MLT1B LTR MaLR 1 390 0 21 57 0 0 chr13 68247300 68247335 -51497563 + AT_rich Low_complexity Low_complexity 1 35 0 845 94 0 0 chr13 68247335 68247452 -51497446 - L1MA1 LINE L1 -8 6294 6178 2663 104 5 8 chr13 68247452 68247846 -51497052 - L1MA2 LINE L1 -259 7464 7072 311 64 0 21 chr13 68247859 68247906 -51496992 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 789 180 0 0 chr13 68247935 68248074 -51496824 - FLAM_C SINE Alu -2 141 3 5820 194 34 12 chr13 68248074 68250118 -51494780 - L1MA2 LINE L1 -635 7086 4934 181 0 0 0 chr13 68250118 68250138 -51494760 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 624 132 11 0 chr13 68250138 68250229 -51494669 - AluSg/x SINE Alu -1 297 187 4894 159 27 15 chr13 68250245 68251379 -51493519 - L1MA2 LINE L1 -3650 3915 2766 7597 209 57 12 chr13 68251383 68251637 -51493261 - L1MA2 LINE L1 -5864 1701 1460 1692 157 46 30 chr13 68251637 68252006 -51492892 - THE1C LTR MaLR 0 375 1 7597 209 57 12 chr13 68252006 68252050 -51492848 - L1MA2 LINE L1 -6105 1460 1419 219 36 0 0 chr13 68252050 68252078 -51492820 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7597 209 57 12 chr13 68252078 68253406 -51491492 - L1MA2 LINE L1 -6146 1419 2 233 379 82 42 chr13 68253588 68253942 -51490956 + L3 LINE CR1 767 1134 -443 309 186 34 0 chr13 68253955 68254014 -51490884 - MLT1B LTR MaLR -329 61 1 1554 119 76 24 chr13 68254365 68254616 -51490282 + AluSx SINE Alu 29 292 -20 234 0 0 0 chr13 68255033 68255059 -51489839 + (T)n Simple_repeat Simple_repeat 1 26 0 1302 337 154 34 chr13 68255405 68256851 -51488047 + L2 LINE L2 1355 2974 -340 701 301 136 5 chr13 68256886 68257268 -51487630 + L2 LINE L2 2882 3313 0 929 271 0 0 chr13 68257377 68257565 -51487333 - MER58A DNA MER1_type -30 194 7 217 345 117 27 chr13 68257881 68258249 -51486649 + L2 LINE L2 1294 1694 -1620 31 76 0 0 chr13 68258258 68258324 -51486574 + AT_rich Low_complexity Low_complexity 1 66 0 205 169 11 180 chr13 68258507 68258596 -51486302 + L2 LINE L2 1882 1955 -1359 401 0 0 20 chr13 68259359 68259409 -51485489 + (TG)n Simple_repeat Simple_repeat 2 50 0 2124 99 0 7 chr13 68259409 68259692 -51485206 - AluSc SINE Alu -28 281 1 288 329 51 0 chr13 68260110 68260189 -51484709 + L2 LINE L2 3181 3263 -9 43 35 0 0 chr13 68260510 68260567 -51484331 + AT_rich Low_complexity Low_complexity 1 57 0 24 32 0 0 chr13 68262001 68262032 -51482866 + AT_rich Low_complexity Low_complexity 1 31 0 21 89 0 0 chr13 68262321 68262377 -51482521 + AT_rich Low_complexity Low_complexity 1 56 0 672 306 154 54 chr13 68262785 68263298 -51481600 - L2 LINE L2 -193 3120 2528 2172 122 0 0 chr13 68263298 68263593 -51481305 + AluSx SINE Alu 7 301 -11 672 306 154 54 chr13 68263593 68263675 -51481223 - L2 LINE L2 -785 2528 2456 250 159 16 32 chr13 68263913 68263976 -51480922 + CT-rich Low_complexity Low_complexity 3 64 0 733 271 32 14 chr13 68264677 68264895 -51480003 - MIR SINE MIR 0 262 41 274 284 155 17 chr13 68265079 68265195 -51479703 - L2 LINE L2 0 3313 3182 3963 115 17 26 chr13 68265355 68265996 -51478902 + MER41B LTR ERV1 1 635 0 557 307 49 5 chr13 68267091 68267296 -51477602 + MIR SINE MIR 49 262 0 295 344 161 22 chr13 68267538 68267898 -51477000 - L3b LINE CR1 -50 1533 1124 2262 107 0 0 chr13 68267966 68268266 -51476632 - AluSq SINE Alu -13 300 1 1741 153 16 16 chr13 68268270 68268577 -51476321 - AluJo SINE Alu 0 312 6 208 348 118 7 chr13 68268944 68269079 -51475819 + MIR SINE MIR 98 247 -15 1279 221 0 4 chr13 68269397 68269628 -51475270 + Tigger5 DNA MER2_type 14 243 -2080 2836 171 23 10 chr13 68269643 68270158 -51474740 + Tigger5 DNA MER2_type 1802 2323 0 189 281 246 9 chr13 68270771 68270885 -51474013 - MIR SINE MIR -26 236 96 257 311 71 14 chr13 68271209 68271397 -51473501 + MIR SINE MIR 38 236 -26 28 0 0 0 chr13 68271714 68271742 -51473156 + AT_rich Low_complexity Low_complexity 1 28 0 5255 163 36 11 chr13 68272059 68273551 -51471347 - L1PB4 LINE L1 0 6156 4622 287 333 0 0 chr13 68273582 68273672 -51471226 - L1ME LINE L1 -476 5645 5556 24 32 0 0 chr13 68275570 68275601 -51469297 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 68275683 68275704 -51469194 + AT_rich Low_complexity Low_complexity 1 21 0 202 367 86 22 chr13 68276281 68276420 -51468478 - L2 LINE L2 -581 2733 2586 898 288 55 94 chr13 68276759 68277357 -51467541 - MER77 LTR ERV1 -24 581 132 234 330 70 0 chr13 68278182 68278282 -51466616 - L2 LINE L2 -34 3279 3173 981 248 27 27 chr13 68278449 68278707 -51466191 - LTR39 LTR ERV1 0 783 526 691 238 39 44 chr13 68278689 68278870 -51466028 - LTR39 LTR ERV1 -376 407 228 * 1666 133 157 90 chr13 68278913 68279290 -51465608 - MER4A LTR ERV1 0 664 263 575 162 0 10 chr13 68279290 68279389 -51465509 - MER4A LTR ERV1 -566 98 1 * 768 153 73 7 chr13 68279389 68279538 -51465360 - LTR39 LTR ERV1 -624 159 1 182 343 58 52 chr13 68279552 68279724 -51465174 - L2 LINE L2 -267 3005 2833 3369 226 97 51 chr13 68279727 68279834 -51465064 - L1MDb LINE L1 -4413 1993 1892 2643 109 0 6 chr13 68279834 68280200 -51464698 + THE1B LTR MaLR 1 364 0 3369 226 97 51 chr13 68280200 68280612 -51464286 - L1MDb LINE L1 -4514 1892 1500 327 49 0 0 chr13 68280612 68280653 -51464245 + (TG)n Simple_repeat Simple_repeat 2 42 0 3369 226 97 51 chr13 68280653 68281702 -51463196 - L1MDb LINE L1 -4906 1500 356 1065 262 66 100 chr13 68281720 68282330 -51462568 - L1MDb LINE L1 -5801 608 20 291 346 19 10 chr13 68282703 68282807 -51462091 - L2 LINE L2 -24 3289 3185 27 49 0 0 chr13 68282900 68282941 -51461957 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr13 68283260 68283281 -51461617 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 68283844 68283867 -51461031 + AT_rich Low_complexity Low_complexity 1 23 0 478 294 30 20 chr13 68284960 68285157 -51459741 + HERVL LTR ERVL 4435 4633 -852 2393 179 12 9 chr13 68285245 68285665 -51459233 - MSTB LTR MaLR -5 421 1 250 311 0 0 chr13 68287400 68287461 -51457437 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1224 261 102 35 chr13 68287670 68288179 -51456719 + MER21B LTR ERV1 1 543 -320 27 29 0 0 chr13 68288209 68288243 -51456655 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr13 68288753 68288783 -51456115 + AT_rich Low_complexity Low_complexity 1 30 0 283 318 45 11 chr13 68289704 68289792 -51455106 - L2 LINE L2 -20 3293 3203 901 286 49 9 chr13 68289959 68290386 -51454512 + L1M4 LINE L1 2477 2920 -3226 27 62 0 0 chr13 68291393 68291441 -51453457 + AT_rich Low_complexity Low_complexity 1 48 0 227 195 203 86 chr13 68292992 68293120 -51451778 + L2 LINE L2 353 495 -2819 1121 225 78 0 chr13 68293426 68293543 -51451355 + AluJo SINE Alu 1 107 -205 502 81 0 23 chr13 68293543 68293630 -51451268 + (TAAAA)n Simple_repeat Simple_repeat 3 87 0 1121 225 78 0 chr13 68293630 68293743 -51451155 + AluJo SINE Alu 107 249 -63 790 294 174 36 chr13 68293771 68294710 -51450188 - LTR28 LTR ERV1 0 1755 1 26 30 0 0 chr13 68294729 68294762 -51450136 + AT_rich Low_complexity Low_complexity 1 33 0 255 194 161 0 chr13 68296235 68296297 -51448601 + HERVL LTR ERVL 3433 3504 -2150 4834 141 239 108 chr13 68296300 68297801 -51447097 - pTR5 LTR ERV1 0 2438 742 483 335 132 32 chr13 68297800 68298385 -51446513 + HERVL LTR ERVL 3501 4143 -1511 * 22 0 0 0 chr13 68299282 68299304 -51445594 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 68299712 68299743 -51445155 + AT_rich Low_complexity Low_complexity 1 31 0 3736 149 15 13 chr13 68301404 68302077 -51442821 + L1MA4 LINE L1 5621 6294 -6 24 53 0 0 chr13 68303297 68303335 -51441563 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 68303430 68303451 -51441447 + AT_rich Low_complexity Low_complexity 1 21 0 193 57 57 0 chr13 68304936 68304971 -51439927 + (TA)n Simple_repeat Simple_repeat 2 38 0 278 314 100 7 chr13 68304972 68305112 -51439786 + MIR SINE MIR 106 258 -4 1469 209 87 3 chr13 68305490 68305801 -51439097 - MER1B DNA MER1_type 0 337 1 348 279 131 25 chr13 68305974 68306096 -51438802 + MER5A DNA MER1_type 49 183 -6 816 231 141 41 chr13 68306119 68306409 -51438489 - MER21B LTR ERV1 -79 784 466 2016 148 0 0 chr13 68307470 68307781 -51437117 - AluSx SINE Alu -1 311 1 301 186 169 76 chr13 68308268 68308386 -51436512 - MER94 DNA DNA 0 134 6 21 100 0 0 chr13 68308487 68308557 -51436341 + AT_rich Low_complexity Low_complexity 1 70 0 213 278 0 0 chr13 68308910 68308964 -51435934 + (CA)n Simple_repeat Simple_repeat 2 55 0 24 53 0 0 chr13 68309261 68309299 -51435599 + AT_rich Low_complexity Low_complexity 1 38 0 1909 147 0 4 chr13 68309299 68309578 -51435320 + AluSg SINE Alu 2 279 -31 249 235 25 0 chr13 68309579 68309660 -51435238 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 195 256 67 44 chr13 68310167 68310257 -51434641 + MIR3 SINE MIR 111 202 -6 2335 74 3 17 chr13 68310725 68311024 -51433874 + AluY SINE Alu 1 295 -16 617 68 0 11 chr13 68311025 68311113 -51433785 + (TA)n Simple_repeat Simple_repeat 1 87 0 26 64 0 0 chr13 68311290 68311337 -51433561 + AT_rich Low_complexity Low_complexity 1 47 0 405 0 0 0 chr13 68312756 68312801 -51432097 + (CA)n Simple_repeat Simple_repeat 2 46 0 6622 157 48 3 chr13 68313608 68314770 -51430128 + Tigger3b DNA MER2_type 1 1214 -17 2214 113 0 16 chr13 68314770 68315088 -51429810 + AluSq SINE Alu 1 313 0 2818 173 12 26 chr13 68315750 68316155 -51428743 - MER61D LTR ERV1 -11 490 92 1870 158 0 0 chr13 68316155 68316453 -51428445 + AluY SINE Alu 1 298 -13 2818 173 12 26 chr13 68316453 68316538 -51428360 - MER61D LTR ERV1 -409 92 7 21 71 0 0 chr13 68316699 68316741 -51428157 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr13 68318808 68318840 -51426058 + AT_rich Low_complexity Low_complexity 1 32 0 228 135 0 0 chr13 68318949 68318986 -51425912 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1060 293 113 17 chr13 68320808 68321402 -51423496 + Charlie7 DNA MER1_type 1686 2336 -276 2353 197 14 10 chr13 68323194 68323687 -51421211 + L1MC2 LINE L1 5524 6018 -326 1723 207 21 36 chr13 68323690 68323907 -51420991 + LTR52 LTR ERVL 5 215 -206 2784 6 0 6 chr13 68323907 68324218 -51420680 + AluYb8 SINE Alu 1 309 -9 1723 207 21 36 chr13 68324218 68324421 -51420477 + LTR52 LTR ERVL 215 419 -2 1559 254 31 18 chr13 68324432 68324821 -51420077 + LTR52-int LTR ERVL 13 406 -3150 297 242 15 0 chr13 68324829 68324895 -51420003 + LTR52-int LTR ERVL 846 912 -2644 1148 162 91 21 chr13 68325097 68325338 -51419560 - L1MB1 LINE L1 -79 6110 5853 969 148 61 15 chr13 68325338 68325534 -51419364 + L1MA10 LINE L1 6129 6333 -1 2684 252 63 43 chr13 68325539 68326463 -51418435 + LTR52-int LTR ERVL 1157 2098 -3587 192 125 0 0 chr13 68327392 68327424 -51417474 + (GA)n Simple_repeat Simple_repeat 1 32 0 1342 119 4 103 chr13 68327742 68327994 -51416904 + AluSq SINE Alu 1 227 -86 252 22 43 22 chr13 68329894 68329940 -51414958 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 193 330 77 0 chr13 68330230 68330321 -51414577 - MIR SINE MIR -4 258 161 442 342 27 0 chr13 68330729 68330913 -51413985 - MIR SINE MIR 0 262 74 344 241 37 0 chr13 68331191 68331299 -51413599 + (TA)n Simple_repeat Simple_repeat 2 113 0 35 54 0 0 chr13 68331424 68331480 -51413418 + AT_rich Low_complexity Low_complexity 1 56 0 487 266 119 66 chr13 68331783 68332102 -51412796 + MLT1H LTR MaLR 211 546 -3 23 33 0 0 chr13 68332351 68332381 -51412517 + AT_rich Low_complexity Low_complexity 1 30 0 235 330 0 11 chr13 68332882 68332976 -51411922 - MIR SINE MIR -100 108 16 1092 249 13 4 chr13 68333877 68334135 -51410763 - MIR SINE MIR -5 257 5 276 306 95 30 chr13 68336037 68336373 -51408525 - L1MEc LINE L1 -4392 2329 1972 2241 154 22 0 chr13 68336386 68336742 -51408156 - THE1B LTR MaLR 0 364 1 3124 88 0 0 chr13 68336742 68337151 -51407747 - THE1B-int LTR MaLR 0 1580 1172 * 4253 102 7 62 chr13 68337144 68337824 -51407074 - THE1B-int LTR MaLR -937 643 1 2076 153 34 0 chr13 68337824 68338176 -51406722 - THE1B LTR MaLR 0 364 1 426 298 79 55 chr13 68338180 68338777 -51406121 - L1MEc LINE L1 -4622 1918 1308 2092 118 0 0 chr13 68338787 68339074 -51405824 - AluSc SINE Alu -22 287 1 2848 184 16 47 chr13 68339095 68339774 -51405124 + L1MC2 LINE L1 5676 6333 -11 682 311 72 70 chr13 68339946 68340545 -51404353 - L1MEc LINE L1 -5469 1061 462 212 167 50 0 chr13 68340588 68340648 -51404250 + (TTA)n Simple_repeat Simple_repeat 1 63 0 1148 127 127 0 chr13 68342044 68342257 -51402641 - L1MA4 LINE L1 0 6300 6061 42 89 0 0 chr13 68342382 68342494 -51402404 + AT_rich Low_complexity Low_complexity 1 112 0 22 35 0 0 chr13 68343786 68343815 -51401083 + AT_rich Low_complexity Low_complexity 1 29 0 1325 274 115 35 chr13 68344132 68345331 -51399567 + L1ME2 LINE L1 4864 6177 -1 306 0 0 0 chr13 68346105 68346139 -51398759 + (CA)n Simple_repeat Simple_repeat 2 35 0 1069 284 50 60 chr13 68346212 68346712 -51398186 - L1ME LINE L1 -5543 527 33 30 69 0 0 chr13 68347172 68347230 -51397668 + AT_rich Low_complexity Low_complexity 1 58 0 1725 162 55 0 chr13 68347860 68348150 -51396748 - AluSx SINE Alu -6 306 1 3393 230 72 37 chr13 68348206 68348508 -51396390 - L1MD1 LINE L1 0 6636 6346 2325 78 0 7 chr13 68348508 68348815 -51396083 - AluSc SINE Alu -4 305 1 3393 230 72 37 chr13 68348815 68349692 -51395206 - L1MD1 LINE L1 -290 6346 5410 2242 108 6 24 chr13 68349692 68350027 -51394871 - L1PA15 LINE L1 -7 6158 5830 3393 230 72 37 chr13 68350027 68350189 -51394709 - L1MD1 LINE L1 -1226 5410 5255 800 124 28 6 chr13 68350206 68350372 -51394526 - L1MD1 LINE L1 -1214 5326 4358 6921 45 27 2 chr13 68350372 68351370 -51393528 + L1PA5 LINE L1 5137 6154 0 394 202 77 0 chr13 68351373 68351477 -51393421 - L1MD1 LINE L1 -2108 4432 4321 2083 166 28 47 chr13 68351478 68351973 -51392925 - L1MD1 LINE L1 -4589 1951 1466 1271 287 79 39 chr13 68352008 68352586 -51392312 - L1MD1 LINE L1 -5497 1043 258 342 91 0 0 chr13 68352586 68352641 -51392257 + (TG)n Simple_repeat Simple_repeat 2 56 0 1271 287 79 39 chr13 68352641 68352783 -51392115 - L1MD1 LINE L1 -6282 258 123 6236 151 48 31 chr13 68353543 68354053 -51390845 - Tigger3b DNA MER2_type -1797 1231 731 1331 149 9 146 chr13 68354053 68354242 -51390656 - AluJb SINE Alu 0 310 97 225 0 0 0 chr13 68354242 68354267 -51390631 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1331 149 9 146 chr13 68354267 68354293 -51390605 - AluJb SINE Alu -213 97 69 1755 164 0 0 chr13 68354293 68354568 -51390330 - AluSx SINE Alu -37 275 1 1331 149 9 146 chr13 68354568 68354706 -51390192 - AluJb SINE Alu -241 69 1 6236 151 48 31 chr13 68354706 68355399 -51389499 - Tigger3b DNA MER2_type -2297 731 6 1492 183 25 16 chr13 68355830 68356153 -51388745 + L1MA4 LINE L1 5966 6291 -9 321 117 0 0 chr13 68357039 68357099 -51387799 + (CAT)n Simple_repeat Simple_repeat 3 62 0 33 25 0 0 chr13 68358002 68358042 -51386856 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr13 68360081 68360104 -51384794 + AT_rich Low_complexity Low_complexity 1 23 0 2745 193 5 10 chr13 68360298 68360877 -51384021 + L1P LINE L1 4305 4880 -1266 4357 151 57 36 chr13 68360921 68361824 -51383074 + L1MA9 LINE L1 5392 6312 0 9584 219 79 18 chr13 68361926 68364640 -51380258 - L1 LINE L1 -745 5465 2587 1364 179 37 100 chr13 68364642 68364901 -51379997 - L1 LINE L1 -4779 1362 1139 2150 125 0 3 chr13 68364901 68365212 -51379686 - AluSg SINE Alu 0 310 1 1364 179 37 100 chr13 68365212 68365381 -51379517 - L1 LINE L1 -5002 1139 961 710 325 41 38 chr13 68366122 68366565 -51378333 - L1 LINE L1 -5696 445 2 27 0 0 0 chr13 68367113 68367140 -51377758 + AT_rich Low_complexity Low_complexity 1 27 0 216 152 0 89 chr13 68367205 68367231 -51377667 + (CATA)n Simple_repeat Simple_repeat 2 29 -44 948 218 97 61 chr13 68367231 68367561 -51377337 + MER2 DNA MER2_type 2 343 -1 216 152 0 89 chr13 68367561 68367613 -51377285 + (CATA)n Simple_repeat Simple_repeat 29 73 0 22 56 0 0 chr13 68367618 68367654 -51377244 + AT_rich Low_complexity Low_complexity 1 36 0 348 347 39 45 chr13 68368062 68368419 -51376479 + L1M4 LINE L1 2359 2713 -3433 1522 211 45 30 chr13 68368727 68369129 -51375769 - L1MA10 LINE L1 0 6334 5927 364 361 63 58 chr13 68369163 68369545 -51375353 + L1MEd LINE L1 564 947 -5469 244 280 20 20 chr13 68369624 68369724 -51375174 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 317 261 40 60 chr13 68369766 68369932 -51374966 + L1MEd LINE L1 1547 1751 -4677 1937 116 7 7 chr13 68370036 68370320 -51374578 + AluSc SINE Alu 14 297 -12 25 53 0 18 chr13 68370392 68370426 -51374472 + AT_rich Low_complexity Low_complexity 1 35 -21 18822 30 6 3 chr13 68370426 68373474 -51371424 + L1PA4 LINE L1 3105 6154 -1 25 53 0 18 chr13 68373474 68373496 -51371402 + AT_rich Low_complexity Low_complexity 35 56 0 1736 166 78 26 chr13 68373762 68374106 -51370792 - THE1B LTR MaLR -2 362 1 1572 328 58 40 chr13 68374423 68375301 -51369597 - HERV16 LTR ERVL -1905 3091 2257 1314 163 18 4 chr13 68375301 68375528 -51369370 + MER30 DNA MER1_type 1 230 0 1572 328 58 40 chr13 68375528 68376129 -51368769 - HERV16 LTR ERVL -2739 2257 1668 1768 316 107 32 chr13 68376315 68377263 -51367635 - HERV16 LTR ERVL -3585 1411 393 1762 173 0 23 chr13 68377295 68377596 -51367302 + AluJb SINE Alu 5 298 -14 188 345 0 0 chr13 68377670 68377728 -51367170 - MIR SINE MIR 0 262 205 2249 93 0 3 chr13 68377729 68378029 -51366869 - AluSx SINE Alu -13 299 1 528 90 26 0 chr13 68378378 68378456 -51366442 - MADE1 DNA Mariner 0 80 1 283 233 19 0 chr13 68381890 68381993 -51362905 + (TA)n Simple_repeat Simple_repeat 1 105 0 1715 180 52 0 chr13 68382001 68382328 -51362570 - MER7A DNA MER2_type -4 342 1 2382 198 54 2 chr13 68382523 68383023 -51361875 + L1PBa LINE L1 689 1214 -5649 21 82 0 0 chr13 68383514 68383563 -51361335 + AT_rich Low_complexity Low_complexity 1 49 0 300 342 18 40 chr13 68383749 68383896 -51361002 + L1MEd LINE L1 930 1073 -5046 1777 111 39 29 chr13 68383896 68384221 -51360677 + AluSq SINE Alu 1 328 0 300 342 18 40 chr13 68384221 68384297 -51360601 + L1MEd LINE L1 1073 1149 -4970 246 297 97 6 chr13 68384311 68384486 -51360412 + L1MEd LINE L1 1154 1344 -4785 270 81 0 0 chr13 68384538 68384575 -51360323 + (CA)n Simple_repeat Simple_repeat 2 38 0 409 239 163 43 chr13 68384677 68384861 -51360037 + L2 LINE L2 2194 2399 -915 444 269 84 18 chr13 68384972 68385139 -51359759 + L2 LINE L2 2678 2855 -459 2359 104 0 0 chr13 68385633 68385941 -51358957 + AluSg SINE Alu 1 308 -2 388 267 51 51 chr13 68385961 68386156 -51358742 + L1MB4 LINE L1 853 1047 -5495 2525 213 13 14 chr13 68386156 68386780 -51358118 - L1 LINE L1 -1472 4674 4052 4040 160 67 21 chr13 68386782 68388027 -51356871 + L1PA16 LINE L1 4875 6158 -8 1832 135 7 14 chr13 68388099 68388380 -51356518 + AluSx SINE Alu 1 279 -33 6389 247 104 24 chr13 68388380 68390901 -51353997 + L1MB4 LINE L1 1535 3852 -2826 1992 197 75 8 chr13 68390901 68391302 -51353596 + MSTA LTR MaLR 1 428 0 6389 247 104 24 chr13 68391302 68393541 -51351357 + L1MB4 LINE L1 3852 6678 0 454 313 101 57 chr13 68393546 68393914 -51350984 + L2 LINE L2 2930 3313 0 30 59 0 0 chr13 68395216 68395267 -51349631 + AT_rich Low_complexity Low_complexity 1 51 0 1798 115 51 24 chr13 68397083 68397379 -51347519 + AluSx SINE Alu 1 304 -8 287 224 35 12 chr13 68397465 68397550 -51347348 + L1MCc LINE L1 24 110 -6313 419 314 61 42 chr13 68398044 68398345 -51346553 + L1MCc LINE L1 1569 2161 -4961 499 281 69 13 chr13 68398353 68398584 -51346314 + L1MCc LINE L1 2238 2481 -4641 29 0 0 0 chr13 68398597 68398626 -51346272 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 68398856 68398877 -51346021 + AT_rich Low_complexity Low_complexity 1 21 0 3138 152 6 15 chr13 68399004 68399536 -51345362 + MER1A DNA MER1_type 1 527 0 1355 218 74 80 chr13 68400714 68400828 -51344070 + MLT1D LTR MaLR 6 119 -386 2190 108 7 0 chr13 68400828 68401133 -51343765 + AluSc SINE Alu 1 307 -2 1355 218 74 80 chr13 68401133 68401517 -51343381 + MLT1D LTR MaLR 119 501 -4 200 302 147 26 chr13 68401587 68401703 -51343195 + L2 LINE L2 3134 3263 -9 7331 170 98 34 chr13 68401953 68403607 -51341291 + MER52A LTR ERV1 3 1754 -1 2021 178 29 6 chr13 68404064 68404412 -51340486 - MLT1A1 LTR MaLR 0 365 10 2852 247 121 30 chr13 68405533 68406200 -51338698 + MER45B DNA AcHobo 2 782 -799 1607 172 40 33 chr13 68406200 68406319 -51338579 + AluJo SINE Alu 1 118 -194 222 37 0 0 chr13 68406319 68406346 -51338552 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1607 172 40 33 chr13 68406346 68406528 -51338370 + AluJo SINE Alu 118 304 -8 2852 247 121 30 chr13 68406528 68406813 -51338085 + MER45B DNA AcHobo 782 1040 0 2176 171 43 31 chr13 68408388 68408809 -51336089 + MSTB LTR MaLR 1 426 0 239 408 10 10 chr13 68410190 68410386 -51334512 - L2 LINE L2 0 3313 3118 1306 164 0 0 chr13 68410469 68410688 -51334210 - MER41B LTR ERV1 -2 633 415 226 196 59 0 chr13 68410708 68410759 -51334139 + MER41B LTR ERV1 334 387 -248 2023 154 10 58 chr13 68410764 68410996 -51333902 - MER41B LTR ERV1 -239 396 191 2003 141 0 10 chr13 68410996 68411294 -51333604 - AluSx SINE Alu -17 295 1 2023 154 10 58 chr13 68411294 68411477 -51333421 - MER41B LTR ERV1 -444 191 1 1913 134 74 26 chr13 68412231 68412582 -51332316 - THE1C LTR MaLR 0 375 8 24 0 0 0 chr13 68413219 68413243 -51331655 + AT_rich Low_complexity Low_complexity 1 24 0 738 186 16 0 chr13 68413506 68413635 -51331263 + FLAM_C SINE Alu 1 131 -2 518 275 122 20 chr13 68413871 68414118 -51330780 - L1ME1 LINE L1 -5 6161 5890 370 136 0 15 chr13 68414491 68414557 -51330341 - MER72 LTR ERV1 -657 65 1 1106 251 57 14 chr13 68416867 68417234 -51327664 + MER110 LTR ERV1 60 442 -49 385 340 102 9 chr13 68417357 68417572 -51327326 - MIR SINE MIR -12 250 16 517 175 35 213 chr13 68417580 68417640 -51327258 - MER96B DNA MER1_type? -182 235 166 3253 91 4 10 chr13 68417640 68418123 -51326775 + L1PA8 LINE L1 5693 6172 0 517 175 35 213 chr13 68418123 68418348 -51326550 - MER96B DNA MER1_type? -251 166 1 248 308 0 33 chr13 68418401 68418492 -51326406 + MIR SINE MIR 66 153 -109 5661 250 52 75 chr13 68418687 68422057 -51322841 + L1MB3 LINE L1 11 3376 -3581 991 269 144 26 chr13 68422074 68422839 -51322059 + L1MB3 LINE L1 3449 4303 -2654 18965 94 8 0 chr13 68422851 68426429 -51318469 + L1PA7 LINE L1 2556 6151 -3 424 236 10 0 chr13 68426430 68426544 -51318354 + L1MB3 LINE L1 4525 4646 -2311 231 105 26 0 chr13 68426554 68426592 -51318306 + MADE1 DNA Mariner 1 39 -41 2113 140 3 0 chr13 68426593 68426901 -51317997 - AluSg SINE Alu -1 309 1 672 248 40 0 chr13 68428327 68428525 -51316373 + MER6B DNA MER2_type 5 210 0 259 300 47 53 chr13 68428629 68428779 -51316119 + MER5B DNA MER1_type 6 154 -24 1999 120 19 29 chr13 68428928 68429244 -51315654 - AluSp SINE Alu 0 313 1 291 266 98 28 chr13 68429249 68429392 -51315506 - HsTC2 DNA Tc2 -115 1783 1631 1270 202 5 84 chr13 68429434 68429617 -51315281 + L1MA4 LINE L1 5771 5908 -392 1762 153 0 4 chr13 68429617 68429898 -51315000 + AluSx SINE Alu 1 280 -32 1270 202 5 84 chr13 68429898 68430105 -51314793 + L1MA4 LINE L1 5908 6130 -170 1979 126 3 10 chr13 68430185 68430495 -51314403 - AluSp SINE Alu -5 308 1 2818 240 25 41 chr13 68430544 68431535 -51313363 + L1MB3 LINE L1 5629 6634 -360 1906 125 4 4 chr13 68431535 68431814 -51313084 + AluSx SINE Alu 1 279 -33 248 68 0 23 chr13 68431820 68431864 -51313034 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 2818 240 25 41 chr13 68431864 68431969 -51312929 + L1MB3 LINE L1 6639 6744 -250 1993 152 0 0 chr13 68431969 68432271 -51312627 + AluSx SINE Alu 3 304 -8 2818 240 25 41 chr13 68432271 68432523 -51312375 + L1MB3 LINE L1 6744 6964 -30 283 332 51 19 chr13 68433353 68433567 -51311331 - MIR SINE MIR -10 252 32 2215 92 0 16 chr13 68433961 68434276 -51310622 + AluSg SINE Alu 1 310 0 253 301 44 26 chr13 68434669 68434782 -51310116 + L2 LINE L2 3158 3272 0 2046 103 0 10 chr13 68434847 68435149 -51309749 - AluSc SINE Alu -10 299 1 1005 222 267 29 chr13 68436849 68438997 -51305901 - SATR1 Satellite Satellite -1 2658 1 343 225 239 14 chr13 68439026 68439168 -51305730 - SATR1 Satellite Satellite -95 375 202 1686 210 108 36 chr13 68439381 68440710 -51304188 - SATR1 Satellite Satellite -20 1425 1 377 211 12 47 chr13 68440825 68440996 -51303902 + (TTA)n Simple_repeat Simple_repeat 2 166 0 34 65 0 0 chr13 68441024 68441086 -51303812 + AT_rich Low_complexity Low_complexity 1 62 0 681 205 70 0 chr13 68441086 68441242 -51303656 + SATR1 Satellite Satellite 154 320 -150 323 283 58 25 chr13 68442459 68442579 -51302319 - L2 LINE L2 0 3313 3190 278 349 9 0 chr13 68442796 68442902 -51301996 - L2 LINE L2 -455 2859 2753 205 153 17 17 chr13 68443283 68443342 -51301556 + CT-rich Low_complexity Low_complexity 1 59 0 203 340 48 10 chr13 68444207 68444310 -51300588 + L2 LINE L2 605 711 -2603 212 333 8 34 chr13 68444368 68444485 -51300413 + L2 LINE L2 2628 2741 -573 1677 164 74 2 chr13 68444556 68444891 -51300007 + L1PA16 LINE L1 5641 5996 -155 941 213 20 0 chr13 68445042 68445244 -51299654 + L1PA16 LINE L1 5960 6165 -1 3031 153 29 20 chr13 68445246 68445801 -51299097 + MER6A DNA MER2_type 46 605 0 9292 53 7 2 chr13 68446267 68448212 -51296686 - L1PA5 LINE L1 -1 6153 4199 692 280 44 8 chr13 68449125 68449375 -51295523 + MER110 LTR ERV1 211 469 -22 800 122 30 0 chr13 68449384 68449515 -51295383 + L1PA15 LINE L1 6028 6162 -3 184 274 48 16 chr13 68449703 68449765 -51295133 + L2 LINE L2 2998 3061 -211 22 0 0 0 chr13 68449997 68450019 -51294879 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 68450089 68450120 -51294778 + AT_rich Low_complexity Low_complexity 1 31 0 472 228 83 55 chr13 68450389 68450643 -51294255 + LTR37B LTR ERV1 194 454 -14 212 253 74 53 chr13 68451046 68451141 -51293757 - MER5A DNA MER1_type -5 184 88 505 301 78 23 chr13 68451186 68451442 -51293456 + LTR33 LTR ERVL 1 270 -251 203 175 0 0 chr13 68451752 68451792 -51293106 + (TAA)n Simple_repeat Simple_repeat 1 40 0 22 70 0 0 chr13 68453164 68453207 -51291691 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 68453715 68453736 -51291162 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 68454809 68454837 -51290061 + AT_rich Low_complexity Low_complexity 1 28 0 585 300 73 5 chr13 68455928 68456148 -51288750 + MER110 LTR ERV1 238 472 -19 22 35 0 0 chr13 68456348 68456377 -51288521 + AT_rich Low_complexity Low_complexity 1 29 0 1594 235 24 22 chr13 68456888 68457301 -51287597 + MLT2D LTR ERVL 1 414 0 310 304 51 51 chr13 68457965 68458182 -51286716 + MER110-int LTR ERV1 154 370 -4277 3131 158 61 23 chr13 68458272 68458571 -51286327 + L1PB4 LINE L1 5476 5762 -394 284 0 28 0 chr13 68458571 68458607 -51286291 + (CA)n Simple_repeat Simple_repeat 2 38 0 3131 158 61 23 chr13 68458607 68458951 -51285947 + L1PB4 LINE L1 5762 6143 -13 23 0 0 0 chr13 68459213 68459236 -51285662 + AT_rich Low_complexity Low_complexity 1 23 0 255 158 0 0 chr13 68459239 68459277 -51285621 + Alu SINE Alu 2 39 -261 3381 307 75 70 chr13 68459327 68461742 -51283156 + MER110-int LTR ERV1 1386 3788 -859 378 0 0 0 chr13 68461742 68461784 -51283114 + (TC)n Simple_repeat Simple_repeat 2 43 0 369 0 0 0 chr13 68461783 68461824 -51283074 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 3381 307 75 70 chr13 68461784 68462032 -51282866 + MER110-int LTR ERV1 3788 4033 -614 1330 191 71 0 chr13 68462032 68462299 -51282599 + AluJb SINE Alu 1 286 -26 3381 307 75 70 chr13 68462299 68463197 -51281701 + MER110-int LTR ERV1 4033 4391 -256 489 239 76 140 chr13 68463302 68463747 -51281151 + MER110 LTR ERV1 72 468 -9 225 132 0 0 chr13 68466049 68466087 -51278811 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 251 304 104 0 chr13 68466798 68466913 -51277985 + MIR3 SINE MIR 78 204 -4 1497 223 22 17 chr13 68468190 68468549 -51276349 - MLT1A1 LTR MaLR 0 365 5 25 31 0 0 chr13 68468722 68468754 -51276144 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr13 68468948 68468982 -51275916 + AT_rich Low_complexity Low_complexity 1 34 0 200 59 29 0 chr13 68469317 68469351 -51275547 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 969 250 28 0 chr13 68470207 68470423 -51274475 - MER58A DNA MER1_type 0 224 3 187 272 111 0 chr13 68472290 68472371 -51272527 - MIR SINE MIR -102 106 17 25 0 0 0 chr13 68472744 68472769 -51272129 + AT_rich Low_complexity Low_complexity 1 25 0 1802 139 0 48 chr13 68473826 68474158 -51270740 - AluSx SINE Alu 0 322 5 26 64 0 0 chr13 68475805 68475852 -51269046 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr13 68475932 68475954 -51268944 + AT_rich Low_complexity Low_complexity 1 22 0 1546 161 64 14 chr13 68475957 68476237 -51268661 - MSTA LTR MaLR -55 373 80 1989 174 36 38 chr13 68476237 68476792 -51268106 - MLT2A2 LTR ERVL 0 554 1 247 108 0 0 chr13 68476792 68476829 -51268069 - MSTA LTR MaLR -343 83 47 564 81 92 0 chr13 68476850 68476937 -51267961 - L1PB1 LINE L1 -5 6146 6052 23 33 0 0 chr13 68477204 68477234 -51267664 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr13 68477550 68477594 -51267304 + AT_rich Low_complexity Low_complexity 1 44 0 396 252 81 8 chr13 68477601 68477724 -51267174 - LTR33A LTR ERVL 0 523 392 381 335 86 17 chr13 68477972 68478205 -51266693 - LTR33A LTR ERVL -263 260 12 380 279 145 48 chr13 68478485 68478822 -51266076 - MLT1L LTR MaLR -42 573 204 21 0 0 0 chr13 68479153 68479174 -51265724 + AT_rich Low_complexity Low_complexity 1 21 0 360 341 48 12 chr13 68479270 68479437 -51265461 - L1MC/D LINE L1 -2062 5746 5574 246 280 98 38 chr13 68479516 68479648 -51265250 - L1MC/D LINE L1 -929 5430 5291 31 44 0 0 chr13 68480046 68480091 -51264807 + AT_rich Low_complexity Low_complexity 1 45 0 239 232 29 0 chr13 68480308 68480377 -51264521 - L1M1 LINE L1 -3932 3633 3563 419 252 25 8 chr13 68480850 68480969 -51263929 + MER104 DNA Tc2 30 150 -30 197 232 14 0 chr13 68481106 68481175 -51263723 + GA-rich Low_complexity Low_complexity 2 71 0 1860 212 94 28 chr13 68481343 68481809 -51263089 - MLT1D LTR MaLR 0 505 9 23 33 0 0 chr13 68482390 68482420 -51262478 + AT_rich Low_complexity Low_complexity 1 30 0 190 231 26 0 chr13 68483167 68483206 -51261692 - MIR SINE MIR -6 256 217 567 286 57 48 chr13 68483235 68483327 -51261571 + MIR SINE MIR 13 103 -159 2228 105 39 36 chr13 68483327 68483690 -51261208 + THE1B LTR MaLR 1 364 0 567 286 57 48 chr13 68483690 68483845 -51261053 + MIR SINE MIR 103 262 0 249 337 17 66 chr13 68483847 68484028 -51260870 - MIR SINE MIR -64 198 27 2023 125 3 29 chr13 68484831 68485142 -51259756 - AluSq SINE Alu -10 303 1 22 35 0 0 chr13 68485224 68485253 -51259645 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 68485416 68485444 -51259454 + AT_rich Low_complexity Low_complexity 1 28 0 23 97 0 0 chr13 68485473 68485545 -51259353 + AT_rich Low_complexity Low_complexity 1 72 0 1707 206 36 0 chr13 68487641 68487976 -51256922 + MER7A DNA MER2_type 2 346 0 209 405 14 0 chr13 68490845 68490919 -51253979 - L2 LINE L2 -37 3235 3161 243 0 0 0 chr13 68491120 68491147 -51253751 + (CA)n Simple_repeat Simple_repeat 1 27 0 606 296 24 0 chr13 68491558 68491727 -51253171 + MIR SINE MIR 69 241 -21 254 325 97 0 chr13 68492072 68492226 -51252672 + MIR SINE MIR 90 258 -4 890 216 62 10 chr13 68492871 68493079 -51251819 - MER20 DNA MER1_type 0 219 1 395 170 54 0 chr13 68494129 68494241 -51250657 + CT-rich Low_complexity Low_complexity 3 120 0 21 36 0 0 chr13 68494302 68494330 -51250568 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr13 68496594 68496636 -51248262 + AT_rich Low_complexity Low_complexity 1 42 0 323 254 28 0 chr13 68496896 68496967 -51247931 - MIR3 SINE MIR -28 180 108 21 36 0 0 chr13 68498042 68498070 -51246828 + AT_rich Low_complexity Low_complexity 1 28 0 264 30 0 0 chr13 68498365 68498398 -51246500 + (TG)n Simple_repeat Simple_repeat 2 34 0 990 179 11 0 chr13 68498417 68498601 -51246297 - L1PB4 LINE L1 -3 6153 5968 31 26 0 0 chr13 68499430 68499468 -51245430 + AT_rich Low_complexity Low_complexity 1 38 0 649 191 93 161 chr13 68499746 68500176 -51244722 - MER57A LTR ERV1 -2 401 1 1304 330 46 53 chr13 68500176 68501095 -51243803 - MER57A-int LTR ERV1 -393 7144 6233 287 252 0 84 chr13 68501482 68501601 -51243297 - MER57A-int LTR ERV1 -761 4110 4002 * 1230 252 47 74 chr13 68501588 68502160 -51242738 - MER57A-int LTR ERV1 -1342 6195 2445 2456 212 24 37 chr13 68502309 68502936 -51241962 - MER57A-int LTR ERV1 -1719 5818 5200 2111 229 70 104 chr13 68502941 68503259 -51241639 - MER57A-int LTR ERV1 -1891 3045 2718 1600 178 0 33 chr13 68503259 68503563 -51241335 + AluJb SINE Alu 3 296 -16 2111 229 70 104 chr13 68503563 68504457 -51240441 - MER57A-int LTR ERV1 -2218 2718 1874 272 176 39 0 chr13 68504476 68504527 -51240371 - MER34 LTR ERV1 -2 540 488 506 165 31 0 chr13 68504562 68504659 -51240239 - MER34 LTR ERV1 -308 234 135 259 274 29 20 chr13 68504662 68504764 -51240134 - MER57A-int LTR ERV1 -6674 1446 1344 1035 227 96 14 chr13 68504812 68505165 -51239733 - MER57A-int LTR ERV1 -3489 1447 1066 205 51 51 0 chr13 68505293 68505332 -51239566 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 478 210 43 29 chr13 68505353 68505491 -51239407 - MER57A-int LTR ERV1 -4503 433 294 905 293 25 0 chr13 68506136 68506375 -51238523 - MER57A-int LTR ERV1 -7290 247 3 786 237 61 54 chr13 68506381 68506739 -51238159 - MER57A LTR ERV1 -2 401 63 2510 53 0 0 chr13 68506951 68507251 -51237647 - AluY SINE Alu -11 300 1 35 78 0 0 chr13 68508111 68508188 -51236710 + AT_rich Low_complexity Low_complexity 1 77 0 191 362 122 30 chr13 68509543 68509847 -51235051 - L3 LINE CR1 -601 976 645 2381 237 44 28 chr13 68509972 68510548 -51234350 + MER82 DNA MER2_type 3 591 -62 2293 155 143 2 chr13 68510548 68511037 -51233861 + LTR64 LTR ERVK 1 558 0 2381 237 44 28 chr13 68511037 68511101 -51233797 + MER82 DNA MER2_type 591 653 0 285 333 11 0 chr13 68511228 68511321 -51233577 - L2 LINE L2 -1 3312 3219 282 323 71 62 chr13 68511789 68512111 -51232787 - L2 LINE L2 -500 2814 2490 880 326 42 10 chr13 68512184 68512494 -51232404 + LTR40b LTR ERVL 143 462 0 232 318 68 45 chr13 68513208 68513428 -51231470 - L2 LINE L2 -1876 1438 1214 402 344 8 0 chr13 68513811 68513942 -51230956 - L2 LINE L2 0 3313 3182 2139 130 42 17 chr13 68514614 68514969 -51229929 + THE1B LTR MaLR 1 364 0 308 316 53 9 chr13 68515590 68515704 -51229194 + L2 LINE L2 3154 3272 0 1805 174 82 28 chr13 68515730 68516121 -51228777 - MSTB LTR MaLR -13 413 2 461 188 20 0 chr13 68516939 68517040 -51227858 - L1PA16 LINE L1 -9 6157 6055 14398 33 0 0 chr13 68517421 68519917 -51224981 - L1PA3 LINE L1 -3 6152 3658 5323 13 0 0 chr13 68519917 68520540 -51224358 + L1P LINE L1 2453 3075 -3071 609 359 110 40 chr13 68521841 68522735 -51222163 + L3 LINE CR1 611 1566 -11 23 33 0 0 chr13 68522898 68522928 -51221970 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr13 68523317 68523366 -51221532 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 45 chr13 68523457 68523472 -51221426 + AT_rich Low_complexity Low_complexity 1 15 -27 196 26 0 77 chr13 68523472 68523511 -51221387 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 29 0 0 45 chr13 68523511 68523539 -51221359 + AT_rich Low_complexity Low_complexity 15 42 0 28 29 0 0 chr13 68523601 68523636 -51221262 + AT_rich Low_complexity Low_complexity 1 35 0 1656 163 69 33 chr13 68525278 68525640 -51219258 + THE1C LTR MaLR 1 375 0 7538 172 39 10 chr13 68525810 68527354 -51217544 - L1 LINE L1 -743 6465 4877 3931 238 55 55 chr13 68527354 68529552 -51215346 - L1 LINE L1 -2848 4360 2153 188 83 0 28 chr13 68529552 68529588 -51215310 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 3931 238 55 55 chr13 68529588 68529819 -51215079 - L1 LINE L1 -5055 2153 1923 493 294 42 78 chr13 68529845 68530154 -51214744 - L1 LINE L1 -5265 1944 1647 1024 346 100 20 chr13 68530178 68530835 -51214063 - L1 LINE L1 -6152 1057 39 432 329 42 46 chr13 68530841 68531078 -51213820 - L1ME4a LINE L1 -293 5828 5593 195 383 70 16 chr13 68531248 68531376 -51213522 - L2 LINE L2 -37 3235 3101 304 219 27 0 chr13 68533543 68533616 -51211282 + L1MB2 LINE L1 5924 5998 -173 228 211 144 56 chr13 68533636 68533726 -51211172 - MIR3 SINE MIR -97 111 14 332 247 37 0 chr13 68533744 68533825 -51211073 - MIR SINE MIR -14 248 165 28 29 0 0 chr13 68534226 68534261 -51210637 + AT_rich Low_complexity Low_complexity 1 35 0 207 162 0 0 chr13 68535716 68535753 -51209145 + (TTATA)n Simple_repeat Simple_repeat 5 41 0 324 309 79 62 chr13 68535915 68536219 -51208679 + L2 LINE L2 3005 3313 0 24 0 0 0 chr13 68536667 68536691 -51208207 + AT_rich Low_complexity Low_complexity 1 24 0 305 247 0 72 chr13 68537204 68537301 -51207597 - 7SK RNA RNA -101 92 3 356 319 139 0 chr13 68537398 68537542 -51207356 - MIR3 SINE MIR -41 167 4 543 243 40 63 chr13 68537829 68538051 -51206847 + L2 LINE L2 3097 3313 0 23 0 0 0 chr13 68538395 68538418 -51206480 + AT_rich Low_complexity Low_complexity 1 23 0 5836 119 26 0 chr13 68538634 68539954 -51204944 + L1PA11 LINE L1 4799 6152 -22 2105 105 37 0 chr13 68540915 68541210 -51203688 - AluSx SINE Alu -6 306 1 25 31 0 0 chr13 68541769 68541801 -51203097 + AT_rich Low_complexity Low_complexity 1 32 0 489 287 44 0 chr13 68542051 68542187 -51202711 + L2 LINE L2 3172 3313 0 22 0 0 0 chr13 68542505 68542527 -51202371 + AT_rich Low_complexity Low_complexity 1 22 0 1721 143 42 7 chr13 68543445 68543752 -51201146 - L1MA8 LINE L1 -136 6155 5838 656 124 54 0 chr13 68543752 68543876 -51201022 + L1MA8 LINE L1 6146 6281 -10 693 206 35 59 chr13 68543884 68544054 -51200844 + FRAM SINE Alu 1 166 0 253 320 61 36 chr13 68546355 68546485 -51198413 + HAL1b LINE L1 81 206 -1142 1703 166 17 10 chr13 68546485 68546780 -51198118 + AluSx SINE Alu 1 297 -15 253 320 61 36 chr13 68546780 68546927 -51197971 + HAL1b LINE L1 206 365 -983 1897 153 48 0 chr13 68546962 68547275 -51197623 - MER7A DNA MER2_type -18 328 3 273 203 14 29 chr13 68547303 68547372 -51197526 + HAL1b LINE L1 383 450 -898 2248 104 3 0 chr13 68547372 68547680 -51197218 + AluSg SINE Alu 1 309 -1 2054 233 32 68 chr13 68548096 68548878 -51196020 + L1MC5 LINE L1 6732 7485 -476 445 150 280 0 chr13 68548918 68549018 -51195880 + FLAM_A SINE Alu 2 129 -4 1865 153 7 0 chr13 68549021 68549322 -51195576 + AluSx SINE Alu 1 303 -9 247 256 81 23 chr13 68549641 68549727 -51195171 + L2 LINE L2 3223 3313 0 2138 116 17 0 chr13 68550282 68550584 -51194314 - AluSx SINE Alu -5 307 1 479 324 148 47 chr13 68551042 68551094 -51193804 + L2 LINE L2 1301 1346 -1968 2223 89 13 29 chr13 68551094 68551410 -51193488 - AluSx SINE Alu -1 311 1 479 324 148 47 chr13 68551410 68552565 -51192333 + L2 LINE L2 1346 2382 -932 2238 147 18 61 chr13 68552565 68552950 -51191948 + MSTB LTR MaLR 1 401 -25 1877 139 17 26 chr13 68552950 68553087 -51191811 + AluJo SINE Alu 1 138 -174 2302 93 0 0 chr13 68553087 68553377 -51191521 + AluSc SINE Alu 1 290 -19 1877 139 17 26 chr13 68553377 68553541 -51191357 + AluJo SINE Alu 138 299 -13 2178 122 0 0 chr13 68553548 68553851 -51191047 + AluSx SINE Alu 1 303 -9 2238 147 18 61 chr13 68553851 68553900 -51190998 + MSTB LTR MaLR 407 424 -2 479 324 148 47 chr13 68553900 68554199 -51190699 + L2 LINE L2 2382 2961 -353 212 260 211 0 chr13 68554346 68554450 -51190448 + L2 LINE L2 3182 3307 -6 588 195 81 109 chr13 68554718 68554777 -51190121 + MLT1J LTR MaLR 5 64 -447 2228 107 0 0 chr13 68554777 68555076 -51189822 - AluSx SINE Alu -13 299 1 588 195 81 109 chr13 68555076 68555453 -51189445 + MLT1J LTR MaLR 64 500 -11 620 326 65 32 chr13 68555707 68555986 -51188912 - HERV16 LTR ERVL -4316 680 393 1810 173 0 23 chr13 68556018 68556319 -51188579 + AluJb SINE Alu 5 298 -14 181 345 0 0 chr13 68556393 68556451 -51188447 - MIR SINE MIR 0 262 205 2277 94 0 3 chr13 68556452 68556750 -51188148 - AluSx SINE Alu -15 297 1 523 90 26 0 chr13 68557099 68557177 -51187721 - MADE1 DNA Mariner 0 80 1 283 233 19 0 chr13 68560611 68560714 -51184184 + (TA)n Simple_repeat Simple_repeat 1 105 0 1697 180 52 0 chr13 68560722 68561049 -51183849 - MER7A DNA MER2_type -4 342 1 2238 200 54 2 chr13 68561244 68561744 -51183154 + L1PBa LINE L1 689 1214 -5649 21 82 0 0 chr13 68562235 68562284 -51182614 + AT_rich Low_complexity Low_complexity 1 49 0 1890 157 0 26 chr13 68562617 68562923 -51181975 + AluSx SINE Alu 1 298 -14 822 215 66 0 chr13 68562936 68563164 -51181734 - L1M4 LINE L1 -1500 4646 4404 2354 67 0 0 chr13 68563187 68563521 -51181377 - AluY SINE Alu 0 334 1 245 267 322 0 chr13 68564122 68564212 -51180686 - L2 LINE L2 -3 3269 3151 25 31 0 0 chr13 68564954 68564986 -51179912 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 68566084 68566112 -51178786 + AT_rich Low_complexity Low_complexity 1 28 0 280 301 115 18 chr13 68566405 68566518 -51178380 - MIR SINE MIR -66 142 19 950 105 8 8 chr13 68566525 68566658 -51178240 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr13 68567257 68567287 -51177611 + AT_rich Low_complexity Low_complexity 1 30 0 271 239 0 37 chr13 68568730 68568839 -51176059 + CT-rich Low_complexity Low_complexity 4 108 0 476 269 94 29 chr13 68569838 68570009 -51174889 - L2 LINE L2 -4 3309 3128 2328 115 0 6 chr13 68570272 68570584 -51174314 - AluSq SINE Alu -3 310 1 1357 148 15 0 chr13 68570796 68570999 -51173899 - AluSq SINE Alu -10 303 98 1925 149 3 34 chr13 68571433 68571628 -51173270 - AluJb SINE Alu 0 332 150 2312 92 14 0 chr13 68571628 68571921 -51172977 - AluSx SINE Alu -14 298 2 1925 149 3 34 chr13 68571921 68572067 -51172831 - AluJb SINE Alu -182 150 1 1465 202 7 14 chr13 68572138 68572415 -51172483 - AluJb SINE Alu -37 275 1 2099 130 10 7 chr13 68572496 68572795 -51172103 + AluSq SINE Alu 1 300 -13 632 137 0 0 chr13 68573292 68573387 -51171511 - L1MC1 LINE L1 -17 6316 6222 2393 85 7 0 chr13 68576563 68576869 -51168029 - AluSp SINE Alu -5 308 1 525 283 107 30 chr13 68578677 68578910 -51165988 - MIR SINE MIR 0 262 12 21 36 0 0 chr13 68580364 68580392 -51164506 + AT_rich Low_complexity Low_complexity 1 28 0 189 132 0 0 chr13 68581376 68581414 -51163484 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 385 319 71 24 chr13 68582427 68582596 -51162302 - MIR3 SINE MIR -11 197 21 1450 178 29 25 chr13 68583194 68583469 -51161429 + AluJo SINE Alu 7 282 -30 26 0 0 0 chr13 68583611 68583637 -51161261 + AT_rich Low_complexity Low_complexity 1 26 0 2125 106 0 14 chr13 68585016 68585308 -51159590 + AluSg SINE Alu 1 288 -22 2133 114 7 7 chr13 68586042 68586339 -51158559 + AluSc SINE Alu 1 297 -12 1812 147 52 0 chr13 68586870 68587156 -51157742 + AluJb SINE Alu 2 302 -10 462 244 43 0 chr13 68588085 68588200 -51156698 - AluSq/x SINE Alu -193 120 1 1002 154 0 0 chr13 68588241 68588384 -51156514 - FRAM SINE Alu -34 142 1 1107 234 18 32 chr13 68588384 68588722 -51156176 - L1M4 LINE L1 -1768 4378 4046 2075 117 3 52 chr13 68588798 68589106 -51155792 - AluSx SINE Alu -19 293 1 2275 33 88 0 chr13 68589767 68590040 -51154858 - AluY SINE Alu -14 297 1 1222 141 224 12 chr13 68590425 68590666 -51154232 + AluJo SINE Alu 1 292 -10 952 121 221 11 chr13 68591187 68591377 -51153521 - MER30 DNA MER1_type 0 230 1 270 326 92 0 chr13 68591443 68591541 -51153357 + L2 LINE L2 3157 3263 -9 848 68 8 17 chr13 68591849 68591966 -51152932 - AluSg/x SINE Alu -15 294 179 22 35 0 0 chr13 68592375 68592404 -51152494 + AT_rich Low_complexity Low_complexity 1 29 0 388 299 85 24 chr13 68592787 68592951 -51151947 - MIR SINE MIR -33 229 56 1510 196 14 4 chr13 68592976 68593252 -51151646 - AluJb SINE Alu -33 279 1 329 237 72 10 chr13 68593825 68593922 -51150976 + MIR3 SINE MIR 105 207 -1 216 0 0 0 chr13 68594166 68594190 -51150708 + (T)n Simple_repeat Simple_repeat 1 24 0 1653 59 0 5 chr13 68595839 68596043 -51148855 + AluSq SINE Alu 1 203 -110 558 161 36 52 chr13 68596594 68596787 -51148111 - AluSq SINE Alu -3 310 121 382 293 125 39 chr13 68597682 68597754 -51147144 + MIR SINE MIR 37 101 -161 2254 95 10 13 chr13 68597754 68598059 -51146839 + AluSx SINE Alu 1 304 -8 382 293 125 39 chr13 68598059 68598194 -51146704 + MIR SINE MIR 101 262 0 2285 102 0 13 chr13 68598254 68598558 -51146340 + AluSc SINE Alu 1 300 -9 180 176 0 0 chr13 68598569 68598603 -51146295 + GA-rich Low_complexity Low_complexity 3 36 0 2270 91 3 0 chr13 68598769 68599055 -51145843 + AluY SINE Alu 1 287 -24 21 36 0 0 chr13 68599055 68599083 -51145815 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr13 68599111 68599158 -51145740 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr13 68599477 68599514 -51145384 + AT_rich Low_complexity Low_complexity 1 37 0 672 211 8 8 chr13 68599704 68599827 -51145071 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr13 68599866 68599888 -51145010 + AT_rich Low_complexity Low_complexity 1 22 0 1514 181 38 14 chr13 68599896 68600189 -51144709 + AluJo SINE Alu 1 300 -12 225 274 32 65 chr13 68600305 68600429 -51144469 + L1ME LINE L1 5572 5691 -430 2210 108 12 0 chr13 68600429 68600753 -51144145 - HSMAR1 DNA Mariner -2 1285 958 182 136 23 0 chr13 68601896 68601940 -51142958 + (TG)n Simple_repeat Simple_repeat 1 45 0 240 54 0 27 chr13 68603906 68603943 -51140955 + Alu SINE Alu 101 136 -167 344 307 51 22 chr13 68603983 68604120 -51140778 + MIR SINE MIR 109 249 -13 1790 171 9 19 chr13 68604197 68604512 -51140386 - AluSx SINE Alu 0 312 1 1850 139 4 4 chr13 68605044 68605343 -51139555 + AluSx SINE Alu 9 307 0 2633 55 0 0 chr13 68607197 68607504 -51137394 + AluY SINE Alu 1 307 -4 188 33 0 33 chr13 68607608 68607638 -51137260 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1711 183 7 14 chr13 68607932 68608222 -51136676 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr13 68608242 68608414 -51136484 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr13 68609978 68610013 -51134885 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr13 68612296 68612369 -51132529 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr13 68612380 68612558 -51132340 - MIR SINE MIR -15 247 48 299 248 195 9 chr13 68612913 68613026 -51131872 + MER20B DNA MER1_type 32 165 -618 280 393 56 0 chr13 68613626 68613715 -51131183 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr13 68614076 68614151 -51130747 + CT-rich Low_complexity Low_complexity 6 82 0 1219 185 19 9 chr13 68619640 68619856 -51125042 + MER20 DNA MER1_type 2 219 0 2354 98 0 0 chr13 68620555 68620852 -51124046 - AluSx SINE Alu -15 297 1 2232 53 0 28 chr13 68622044 68622326 -51122572 + AluY SINE Alu 29 302 -9 30 27 0 0 chr13 68622437 68622474 -51122424 + AT_rich Low_complexity Low_complexity 1 37 0 2411 63 0 20 chr13 68622479 68622780 -51122118 + AluY SINE Alu 1 295 -16 404 176 162 29 chr13 68623333 68623469 -51121429 - L1MC5 LINE L1 -48 7913 7760 13405 36 20 1 chr13 68623630 68625401 -51119497 + L1P2 LINE L1 3774 5594 -561 2796 195 75 13 chr13 68625549 68625769 -51119129 + L1MC2 LINE L1 4716 4921 -1423 333 0 0 0 chr13 68625769 68625806 -51119092 + (TG)n Simple_repeat Simple_repeat 2 38 0 2796 195 75 13 chr13 68625806 68626639 -51118259 + L1MC2 LINE L1 4921 5831 -513 1236 240 124 20 chr13 68626641 68627132 -51117766 + L1M1 LINE L1 3100 3641 -3924 718 112 37 67 chr13 68627148 68627282 -51117616 + L1M2 LINE L1 5665 5794 -518 508 91 0 80 chr13 68627282 68627370 -51117528 + L1MA9 LINE L1 5383 5463 -849 1831 167 44 22 chr13 68627460 68627820 -51117078 + L1MA9 LINE L1 5782 6149 -163 709 189 40 27 chr13 68627821 68627969 -51116929 + AluJb SINE Alu 2 151 -161 2020 102 0 0 chr13 68628224 68628478 -51116420 - AluSq SINE Alu -59 254 1 946 178 38 0 chr13 68628771 68628928 -51115970 + AluJb SINE Alu 137 299 -13 1086 148 67 94 chr13 68630431 68630558 -51114340 + MER58A DNA MER1_type 8 128 -2292 2172 118 20 0 chr13 68630558 68630863 -51114035 - AluSx SINE Alu -1 311 1 1086 148 67 94 chr13 68630863 68630958 -51113940 + MER58A DNA MER1_type 128 224 0 488 286 170 61 chr13 68630960 68631418 -51113480 + L2 LINE L2 2804 3311 -2 40 0 0 0 chr13 68632261 68632301 -51112597 + AT_rich Low_complexity Low_complexity 1 40 0 234 0 0 0 chr13 68632361 68632387 -51112511 + (T)n Simple_repeat Simple_repeat 1 26 0 2488 61 0 0 chr13 68632409 68632706 -51112192 + AluY SINE Alu 5 301 -10 2020 133 3 3 chr13 68632894 68633187 -51111711 - AluSc SINE Alu -12 297 5 21 36 0 0 chr13 68633281 68633309 -51111589 + AT_rich Low_complexity Low_complexity 1 28 0 1014 146 12 12 chr13 68634105 68634269 -51110629 + AluJb SINE Alu 136 299 -13 711 131 71 89 chr13 68634272 68634440 -51110458 + L1MA9 LINE L1 6145 6309 -3 3182 111 21 38 chr13 68634448 68634942 -51109956 + L1MC1 LINE L1 5818 6304 -29 2122 109 10 33 chr13 68634942 68635245 -51109653 + AluSx SINE Alu 5 300 -12 3182 111 21 38 chr13 68635245 68635272 -51109626 + L1MC1 LINE L1 6304 6330 -3 277 192 41 14 chr13 68685299 68685372 -51059526 - L1MC3 LINE L1 -1594 6191 6117 22 35 0 0 chr13 68685372 68685401 -51059497 + AT_rich Low_complexity Low_complexity 1 29 0 230 347 32 16 chr13 68686056 68686180 -51058718 - MLT1I LTR MaLR -237 172 47 21 57 0 0 chr13 68686374 68686409 -51058489 + AT_rich Low_complexity Low_complexity 1 35 0 921 255 50 103 chr13 68686838 68687583 -51057315 + MER67B LTR ERV1 1 660 -1 231 138 100 38 chr13 68687785 68687865 -51057033 + AluS SINE Alu 1 85 -218 267 31 0 0 chr13 68688604 68688636 -51056262 + (TA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 68688876 68688899 -51055999 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr13 68689148 68689188 -51055710 + AT_rich Low_complexity Low_complexity 1 40 0 1269 134 25 0 chr13 68689466 68689704 -51055194 - L1MA7 LINE L1 0 6291 6048 2130 173 36 25 chr13 68689884 68690323 -51054575 + MER65A LTR ERV1 2 445 0 336 317 10 0 chr13 68691716 68691820 -51053078 - MIR3 SINE MIR -5 203 99 2268 212 14 63 chr13 68691886 68692453 -51052445 - MER87 LTR ERV1 0 541 3 2022 124 0 7 chr13 68694066 68694365 -51050533 + AluSc SINE Alu 1 297 -12 396 265 21 79 chr13 68694482 68694671 -51050227 - MLT2F LTR ERVL -46 617 440 385 316 68 17 chr13 68694750 68694927 -51049971 - MER63A DNA MER1_type -13 197 12 * 412 285 23 15 chr13 68694920 68695050 -51049848 - MLT2E LTR ERVL -497 131 1 243 206 0 96 chr13 68695364 68695437 -51049461 + MLT1H LTR MaLR 96 161 -388 * 249 139 0 0 chr13 68695407 68695443 -51049455 + MLT1I LTR MaLR 100 135 -274 1243 270 69 7 chr13 68696203 68696621 -51048277 - MLT1C LTR MaLR 0 467 24 1565 209 57 89 chr13 68696644 68697084 -51047814 - MLT1C-int LTR MaLR 0 1371 946 596 275 90 70 chr13 68697091 68697624 -51047274 - MLT1G1 LTR MaLR -21 521 22 630 293 111 59 chr13 68697882 68698439 -51046459 - MLT1G1 LTR MaLR 0 595 10 576 301 37 40 chr13 68698507 68698779 -51046119 + MLT1J1 LTR MaLR 36 306 -140 306 271 52 0 chr13 68698791 68698887 -51046011 + MLT1E1 LTR MaLR 77 177 -477 22 0 0 0 chr13 68699023 68699045 -51045853 + AT_rich Low_complexity Low_complexity 1 22 0 2489 56 0 0 chr13 68699375 68699678 -51045220 + AluY SINE Alu 1 303 -8 1912 107 0 77 chr13 68700756 68701093 -51043805 + AluSx SINE Alu 1 311 -1 498 328 55 15 chr13 68701187 68701513 -51043385 - MLT1H1 LTR MaLR -196 359 14 360 0 0 0 chr13 68701888 68701928 -51042970 + (TTA)n Simple_repeat Simple_repeat 1 40 0 259 296 9 26 chr13 68702828 68702943 -51041955 - MLT1-int LTR MaLR -1250 121 9 416 266 126 19 chr13 68702989 68703234 -51041664 - MLT1H1 LTR MaLR -196 359 79 292 257 68 14 chr13 68705378 68705452 -51039446 + L2 LINE L2 3191 3268 -45 575 194 24 24 chr13 68706175 68706299 -51038599 - FLAM_A SINE Alu -13 129 6 24 0 0 0 chr13 68706416 68706440 -51038458 + AT_rich Low_complexity Low_complexity 1 24 0 404 281 106 43 chr13 68707673 68707908 -51036990 + MIR SINE MIR 13 262 0 305 274 21 32 chr13 68709229 68709324 -51035574 - L1MD3 LINE L1 0 7995 7902 614 154 32 58 chr13 68709328 68709484 -51035414 + L1MC4a LINE L1 7152 7303 -505 231 170 0 0 chr13 68709733 68709780 -51035118 + T-rich Low_complexity Low_complexity 1 47 0 253 220 0 17 chr13 68710227 68710286 -51034612 + GA-rich Low_complexity Low_complexity 2 59 0 212 337 31 31 chr13 68711046 68711144 -51033754 - MER5A DNA MER1_type -45 144 47 472 261 163 33 chr13 68712231 68712619 -51032279 + MLT1G3 LTR MaLR 10 418 -112 207 0 0 0 chr13 68712637 68712660 -51032238 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 510 262 74 0 chr13 68712699 68712848 -51032050 + MLT1G3 LTR MaLR 351 510 -20 348 343 41 24 chr13 68713126 68713295 -51031603 - MIR SINE MIR -84 178 7 270 321 98 36 chr13 68713310 68713422 -51031476 - MIR3 SINE MIR -87 121 3 1977 101 3 11 chr13 68714754 68715040 -51029858 - AluSg SINE Alu -26 284 1 1008 185 95 24 chr13 68715209 68715420 -51029478 + MER46A DNA MER2_type 11 236 0 22 80 0 0 chr13 68716153 68716203 -51028695 + AT_rich Low_complexity Low_complexity 1 50 0 201 162 0 0 chr13 68717600 68717637 -51027261 + A-rich Low_complexity Low_complexity 1 37 0 203 319 85 11 chr13 68717756 68717827 -51027071 - L2 LINE L2 0 3313 3232 2458 121 5 16 chr13 68717827 68718206 -51026692 + THE1C LTR MaLR 1 375 0 203 319 85 11 chr13 68718206 68718228 -51026670 - L2 LINE L2 -81 3232 3213 925 138 61 33 chr13 68718338 68718519 -51026379 - L1PA8 LINE L1 -1 6171 5986 2390 160 160 42 chr13 68718628 68719177 -51025721 - LTR18B LTR ERVL 0 614 1 214 333 0 0 chr13 68719177 68719234 -51025664 - L2 LINE L2 -12 3260 3204 344 364 76 34 chr13 68719586 68719995 -51024903 - L2 LINE L2 -527 2787 2362 1660 238 95 42 chr13 68720030 68720239 -51024659 - MLT1E3 LTR MaLR 0 624 427 1355 220 115 41 chr13 68720239 68720707 -51024191 + MLT1D LTR MaLR 1 503 -2 1660 238 95 42 chr13 68720707 68721089 -51023809 - MLT1E3 LTR MaLR -197 427 2 291 338 5 0 chr13 68721133 68721243 -51023655 + MER5A DNA MER1_type 29 140 -38 1845 96 58 58 chr13 68721877 68722189 -51022709 + AluSx SINE Alu 1 312 0 183 80 0 0 chr13 68722289 68722314 -51022584 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 362 322 117 18 chr13 68723003 68723174 -51021724 - LTR16A LTR ERVL 0 450 263 310 48 24 0 chr13 68723180 68723222 -51021676 - L1P2 LINE L1 -468 5686 5644 2515 60 9 3 chr13 68723222 68723554 -51021344 + L1PA4 LINE L1 5819 6154 -1 591 76 109 11 chr13 68724573 68724665 -51020233 + MER85 DNA T2_type 1 101 -38 213 254 18 0 chr13 68725187 68725242 -51019656 - MIR3 SINE MIR -3 205 150 4705 208 44 60 chr13 68725665 68726125 -51018773 - L1MB3 LINE L1 -9 6410 5944 2072 190 54 0 chr13 68726125 68726515 -51018383 - LTR57 LTR ERVL 0 411 1 4705 208 44 60 chr13 68726515 68727054 -51017844 - L1MB3 LINE L1 -475 5944 5397 236 133 0 0 chr13 68727054 68727099 -51017799 - LTR66 LTR ERVL -171 439 395 4705 208 44 60 chr13 68727099 68727499 -51017399 - L1MB3 LINE L1 -1022 5397 4992 2152 115 3 0 chr13 68727499 68727803 -51017095 - AluSq SINE Alu -7 306 2 4705 208 44 60 chr13 68727803 68728748 -51016150 - L1MB3 LINE L1 -1427 4992 4070 1989 224 38 24 chr13 68728750 68729200 -51015698 + MER70A LTR ERVL 3 458 -14 6631 216 40 24 chr13 68729201 68732134 -51012764 - L1MB3 LINE L1 -2311 4071 1097 2508 221 31 26 chr13 68732142 68732184 -51012714 - MLT2B3 LTR ERVL -12 542 502 965 122 11 17 chr13 68732184 68732365 -51012533 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2508 221 31 26 chr13 68732365 68732861 -51012037 - MLT2B3 LTR ERVL -52 502 1 4563 223 63 11 chr13 68732861 68733905 -51010993 - L1MB3 LINE L1 -5283 1101 4 309 264 36 18 chr13 68736197 68736307 -51008591 + MER103 DNA DNA 26 137 -29 214 191 0 0 chr13 68736337 68736379 -51008519 + T-rich Low_complexity Low_complexity 1 42 0 1158 190 24 118 chr13 68736923 68737399 -51007499 + MER52A LTR ERV1 660 1232 -523 375 245 66 22 chr13 68737503 68737696 -51007202 + LTR28 LTR ERV1 528 716 -304 * 2685 183 2 87 chr13 68737667 68738268 -51006630 + MER52A LTR ERV1 1204 1753 -2 1552 228 42 23 chr13 68741170 68741556 -51003342 - MSTD LTR MaLR -3 393 1 324 0 0 0 chr13 68741890 68741926 -51002972 + (CA)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr13 68743077 68743097 -51001801 + (T)n Simple_repeat Simple_repeat 1 20 0 185 315 98 11 chr13 68743992 68744084 -51000814 - MIR SINE MIR -109 153 54 183 319 97 14 chr13 68744094 68744166 -51000732 - L2 LINE L2 -9 3304 3227 1491 144 4 0 chr13 68744527 68744802 -51000096 - L1P4 LINE L1 -663 5502 5227 1168 184 25 103 chr13 68744911 68745232 -50999666 - MER67D LTR ERV1 -203 311 16 1430 170 129 19 chr13 68746060 68746378 -50998520 - MER93b LTR ERV1 0 373 21 3845 153 25 32 chr13 68746402 68747129 -50997769 - MER50 LTR ERV1 -12 722 1 714 276 77 47 chr13 68748704 68749150 -50995748 + L2 LINE L2 2529 3276 -37 191 59 0 59 chr13 68749150 68749184 -50995714 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 27 0 0 0 chr13 68750849 68750876 -50994022 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr13 68751405 68751440 -50993458 + AT_rich Low_complexity Low_complexity 1 35 0 1997 115 31 6 chr13 68751816 68752137 -50992761 - L1PB1 LINE L1 -3 6148 5820 1034 221 66 69 chr13 68752308 68752458 -50992440 + AluJb SINE Alu 1 152 -150 2112 99 15 0 chr13 68752458 68752754 -50992144 + AluSg SINE Alu 3 302 0 1034 221 66 69 chr13 68752754 68752891 -50992007 + AluJb SINE Alu 152 288 -14 663 296 16 11 chr13 68753164 68753350 -50991548 + MIR SINE MIR 1 187 -75 1854 137 57 33 chr13 68753936 68754302 -50990596 - THE1C LTR MaLR 0 375 1 249 331 59 44 chr13 68755468 68755604 -50989294 + L2 LINE L2 2952 3089 -183 823 353 42 42 chr13 68755775 68756223 -50988675 - LTR16A LTR ERVL -2 448 1 475 339 6 11 chr13 68756371 68756554 -50988344 + LTR16A LTR ERVL 236 417 -33 371 314 8 16 chr13 68757374 68757498 -50987400 - L2 LINE L2 -8 3305 3183 2378 173 64 0 chr13 68757692 68758115 -50986783 - LTR47A LTR ERVL -2 450 1 894 255 94 22 chr13 68759178 68759599 -50985299 - MLT1J LTR MaLR -4 507 5 308 314 16 40 chr13 68759971 68760095 -50984803 - L2 LINE L2 -2 3311 3191 22 0 0 0 chr13 68761933 68761955 -50982943 + AT_rich Low_complexity Low_complexity 1 22 0 430 287 60 27 chr13 68762355 68762505 -50982393 + MIR SINE MIR 63 217 -45 610 212 0 0 chr13 68763204 68763317 -50981581 - Tigger7 DNA MER2_type 0 2587 2475 904 260 59 0 chr13 68763329 68763533 -50981365 - Tigger7 DNA MER2_type -487 218 3 33 0 0 0 chr13 68763553 68763586 -50981312 + AT_rich Low_complexity Low_complexity 1 33 0 1919 148 0 10 chr13 68763586 68763896 -50981002 - AluSq SINE Alu -1 312 6 12406 159 56 21 chr13 68763939 68765046 -50979852 - Tigger1 DNA MER2_type -1 2417 1350 3104 185 20 8 chr13 68765046 68765642 -50979256 - LTR26 LTR ERV1 0 603 1 12406 159 56 21 chr13 68765642 68766571 -50978327 - Tigger1 DNA MER2_type -1068 1350 455 1995 123 106 6 chr13 68766571 68766912 -50977986 - THE1C LTR MaLR 0 375 1 9499 125 41 38 chr13 68766912 68768486 -50976412 - THE1C-int LTR MaLR 0 1580 1 2675 109 0 5 chr13 68768486 68768863 -50976035 - THE1C LTR MaLR 0 375 1 12406 159 56 21 chr13 68768863 68769159 -50975739 - Tigger1 DNA MER2_type -1962 456 1 1161 215 71 13 chr13 68769523 68769834 -50975064 - L1MB7 LINE L1 -440 5738 5410 * 1528 232 23 43 chr13 68769828 68770268 -50974630 + L1MB7 LINE L1 5741 6171 -13 209 310 60 69 chr13 68770402 68770518 -50974380 - L2 LINE L2 0 3313 3199 722 372 59 9 chr13 68771585 68772007 -50972891 + L1M3c LINE L1 1366 1808 -5688 536 163 0 0 chr13 68772639 68772725 -50972173 - THE1B LTR MaLR 0 364 279 5675 131 14 27 chr13 68772725 68773750 -50971148 - pTR5 LTR ERV1 -685 1753 743 1857 166 34 19 chr13 68773750 68774075 -50970823 - THE1B LTR MaLR -34 330 1 1977 263 62 12 chr13 68774699 68774714 -50970184 + L1M3c LINE L1 2290 2303 -5263 1362 249 11 0 chr13 68774714 68774995 -50969903 - AluJb SINE Alu -28 284 1 1977 263 62 12 chr13 68774995 68775899 -50968999 + L1M3c LINE L1 2303 3242 -4324 259 254 0 64 chr13 68775886 68775996 -50968902 + L1M3c LINE L1 3478 3580 -3985 * 6441 205 104 9 chr13 68775996 68777364 -50967534 + L1M1 LINE L1 14 1511 -6054 7976 173 21 4 chr13 68777366 68779457 -50965441 + L1M1 LINE L1 5109 7238 -485 531 148 0 0 chr13 68779457 68779538 -50965360 - PABL_A LTR ERV1 -578 82 2 2273 154 75 10 chr13 68779538 68780031 -50964867 + L1MA9 LINE L1 5783 6307 -5 23 0 0 0 chr13 68780220 68780243 -50964655 + AT_rich Low_complexity Low_complexity 1 23 0 2238 98 14 0 chr13 68780434 68780731 -50964167 + AluSg SINE Alu 1 301 -9 960 81 0 0 chr13 68782592 68782715 -50962183 + AluY SINE Alu 175 297 -14 201 162 0 0 chr13 68782761 68782798 -50962100 + (TA)n Simple_repeat Simple_repeat 2 38 0 1534 265 39 54 chr13 68782890 68783373 -50961525 - LTR40a LTR ERVL 0 519 44 905 295 37 0 chr13 68783385 68783653 -50961245 - HERVL40 LTR ERVL 0 5530 5253 615 277 105 43 chr13 68784572 68784930 -50959968 - HERVL40 LTR ERVL -691 4565 2070 330 235 113 144 chr13 68785015 68785424 -50959474 + HERVL40 LTR ERVL 85 480 -5050 863 275 106 15 chr13 68785522 68785853 -50959045 + HERVL40 LTR ERVL 2968 3328 -2202 581 274 12 12 chr13 68785866 68786034 -50958864 + HERVL40 LTR ERVL 3439 3606 -1924 336 223 27 101 chr13 68786045 68786193 -50958705 - LTR40b LTR ERVL -289 173 37 1506 312 55 15 chr13 68786196 68786812 -50958086 + HERVL40 LTR ERVL 3628 4268 -1262 265 246 29 29 chr13 68786990 68787128 -50957770 + (TA)n Simple_repeat Simple_repeat 2 139 0 1959 183 15 0 chr13 68787129 68787462 -50957436 + MER7A DNA MER2_type 1 336 -10 217 319 85 21 chr13 68787846 68787940 -50956958 + MIR3 SINE MIR 78 177 -31 319 310 23 8 chr13 68788368 68788497 -50956401 + LTR33 LTR ERVL 391 521 0 715 244 11 17 chr13 68789084 68789264 -50955634 - MIR SINE MIR -8 254 76 562 295 157 71 chr13 68790549 68790956 -50953942 - L2 LINE L2 -48 3265 2824 27 49 0 0 chr13 68791159 68791200 -50953698 + AT_rich Low_complexity Low_complexity 1 41 0 47 53 0 0 chr13 68792237 68792312 -50952586 + AT_rich Low_complexity Low_complexity 1 75 0 1787 182 0 3 chr13 68792779 68793092 -50951806 + AluSx SINE Alu 1 312 0 182 327 0 0 chr13 68793724 68793776 -50951122 - MIR SINE MIR -47 215 164 2982 213 171 10 chr13 68793781 68794615 -50950283 - LTR28 LTR ERV1 0 1020 1 28 48 0 0 chr13 68794792 68794834 -50950064 + AT_rich Low_complexity Low_complexity 1 42 0 1021 135 6 56 chr13 68794860 68795038 -50949860 - AluSx SINE Alu -143 169 1 2265 120 0 0 chr13 68795050 68795359 -50949539 - AluSc SINE Alu 0 309 1 470 276 74 80 chr13 68795766 68796078 -50948820 - LTR68 LTR ERV1 -430 310 1 1976 125 133 18 chr13 68796670 68797054 -50947844 - MSTA LTR MaLR 0 428 1 2071 127 3 3 chr13 68797318 68797625 -50947273 - AluSq SINE Alu -2 311 5 180 97 0 0 chr13 68797634 68797665 -50947233 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 201 74 0 0 chr13 68797689 68797716 -50947182 + (T)n Simple_repeat Simple_repeat 1 27 0 219 69 0 0 chr13 68798781 68798810 -50946088 + (TA)n Simple_repeat Simple_repeat 2 30 0 260 362 78 35 chr13 68798847 68798988 -50945910 - MIR SINE MIR -108 154 8 556 260 66 11 chr13 68800602 68800783 -50944115 + MIR SINE MIR 37 227 -35 917 349 99 11 chr13 68800841 68801475 -50943423 + L2 LINE L2 2205 2894 -420 657 241 28 106 chr13 68801521 68801803 -50943095 - MIR SINE MIR 0 262 3 23 0 0 0 chr13 68801868 68801891 -50943007 + AT_rich Low_complexity Low_complexity 1 23 0 1011 246 71 28 chr13 68801907 68802330 -50942568 - L1M4 LINE L1 -1439 4707 4267 296 127 18 0 chr13 68802358 68802413 -50942485 + (TATG)n Simple_repeat Simple_repeat 2 57 0 432 284 84 53 chr13 68802618 68802871 -50942027 - L1M4 LINE L1 -2260 3886 3617 1907 119 19 26 chr13 68802871 68803181 -50941717 + AluSq SINE Alu 1 308 -5 432 284 84 53 chr13 68803181 68803282 -50941616 - L1M4 LINE L1 -2529 3617 3521 610 264 123 14 chr13 68803285 68803652 -50941246 - L1M4 LINE L1 -2995 3151 2745 23 33 0 0 chr13 68804121 68804151 -50940747 + AT_rich Low_complexity Low_complexity 1 30 0 203 159 0 91 chr13 68804580 68804624 -50940274 - L2 LINE L2 -3 3310 3271 328 302 27 40 chr13 68805306 68805455 -50939443 + MER5B DNA MER1_type 1 147 -31 23 0 0 0 chr13 68805474 68805497 -50939401 + AT_rich Low_complexity Low_complexity 1 23 0 185 196 20 0 chr13 68805601 68805652 -50939246 + (TA)n Simple_repeat Simple_repeat 1 52 0 28 48 0 0 chr13 68806506 68806548 -50938350 + AT_rich Low_complexity Low_complexity 1 42 0 210 37 0 0 chr13 68806836 68806863 -50938035 + (CA)n Simple_repeat Simple_repeat 2 28 0 252 305 71 52 chr13 68807386 68807596 -50937302 + L1M4b LINE L1 29 242 -6617 275 271 129 19 chr13 68807890 68808045 -50936853 + L1M4b LINE L1 1030 1201 -5654 934 218 54 124 chr13 68808214 68808994 -50935904 + L1M4b LINE L1 1324 2022 -4833 1329 241 66 23 chr13 68809065 68809459 -50935439 + L1MB8 LINE L1 5490 5900 -278 439 63 0 0 chr13 68809459 68809522 -50935376 - AluJ/FLAM SINE Alu -249 63 1 190 319 101 58 chr13 68809663 68809801 -50935097 + MIR3 SINE MIR 54 197 -11 29 60 0 0 chr13 68809949 68809999 -50934899 + AT_rich Low_complexity Low_complexity 1 50 0 2265 92 0 3 chr13 68810843 68811148 -50933750 - AluY SINE Alu -7 304 1 45 75 0 0 chr13 68811835 68811929 -50932969 + AT_rich Low_complexity Low_complexity 1 94 0 21 82 0 0 chr13 68812088 68812137 -50932761 + AT_rich Low_complexity Low_complexity 1 49 0 1657 191 0 10 chr13 68812309 68812612 -50932286 + AluJo SINE Alu 3 302 -10 231 254 34 17 chr13 68812617 68812676 -50932222 + MIR SINE MIR 203 262 0 507 299 65 0 chr13 68813575 68813759 -50931139 + MIR SINE MIR 66 261 -1 387 283 95 3 chr13 68816211 68816494 -50928404 + L1MEc LINE L1 859 1167 -5229 203 308 0 0 chr13 68816552 68816617 -50928281 + GA-rich Low_complexity Low_complexity 3 67 0 835 264 52 49 chr13 68816736 68817308 -50927590 + L1MEc LINE L1 1548 2121 -4275 273 214 67 0 chr13 68817329 68817418 -50927480 + L1MEc LINE L1 2304 2398 -3817 * 643 257 83 23 chr13 68817416 68817634 -50927264 + L1ME2 LINE L1 1 231 -6628 1352 208 136 16 chr13 68818025 68818543 -50926355 - L1M4c LINE L1 -5095 1447 896 278 176 44 0 chr13 68818587 68818655 -50926243 - L1M4b LINE L1 -5252 1607 1537 485 255 185 29 chr13 68818698 68819012 -50925886 + L1ME2 LINE L1 1749 2111 -4848 2497 282 77 33 chr13 68819035 68820766 -50924132 + L1ME2 LINE L1 4070 5723 -1252 2237 128 123 5 chr13 68820766 68821148 -50923750 - MSTA LTR MaLR 0 428 2 8285 186 25 12 chr13 68821149 68822780 -50922118 - MSTA-int LTR MaLR 0 1651 1 2017 153 119 8 chr13 68822780 68823165 -50921733 - MSTA LTR MaLR 0 428 1 2497 282 77 33 chr13 68823165 68824206 -50920692 + L1ME2 LINE L1 5722 6967 -8 324 284 155 13 chr13 68824319 68824474 -50920424 - MER5B DNA MER1_type 0 178 2 42 20 0 0 chr13 68824528 68824577 -50920321 + AT_rich Low_complexity Low_complexity 1 49 0 528 298 54 0 chr13 68825899 68826067 -50918831 - MER45A DNA AcHobo -1 177 1 1590 195 0 20 chr13 68826159 68826457 -50918441 + AluJo SINE Alu 1 292 -20 225 324 90 9 chr13 68826916 68827027 -50917871 + MIR SINE MIR 28 147 -115 369 0 0 0 chr13 68827142 68827183 -50917715 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr13 68827832 68827853 -50917045 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 68827968 68827991 -50916907 + AT_rich Low_complexity Low_complexity 1 23 0 441 265 102 27 chr13 68828464 68828678 -50916220 - MLT1H1 LTR MaLR -288 267 80 184 277 0 0 chr13 68828755 68828802 -50916096 - L2 LINE L2 -16 3297 3251 694 211 40 0 chr13 68830801 68830976 -50913922 + MER53 DNA DNA 1 182 -7 1378 309 97 13 chr13 68831194 68831731 -50913167 + MLT1G LTR MaLR 7 588 -2 368 253 20 10 chr13 68831906 68832005 -50912893 - MER5A DNA MER1_type -80 109 10 348 273 0 0 chr13 68832385 68832451 -50912447 - MER30 DNA MER1_type -2 228 163 250 220 113 77 chr13 68832470 68832533 -50912365 - Looper DNA T2_type -1 1557 1498 195 42 0 0 chr13 68832533 68832557 -50912341 + (TA)n Simple_repeat Simple_repeat 2 25 0 250 220 113 77 chr13 68832557 68832661 -50912237 - Looper DNA T2_type -60 1498 1384 732 195 116 0 chr13 68832666 68832830 -50912068 - Looper DNA T2_type -599 959 777 673 207 28 0 chr13 68832866 68833011 -50911887 - Looper DNA T2_type -895 663 515 754 221 64 40 chr13 68833026 68833275 -50911623 - Looper DNA T2_type -1298 260 6 23 0 0 0 chr13 68833572 68833595 -50911303 + AT_rich Low_complexity Low_complexity 1 23 0 21 104 0 0 chr13 68833799 68833876 -50911022 + AT_rich Low_complexity Low_complexity 1 77 0 310 224 0 0 chr13 68834088 68834146 -50910752 - L2 LINE L2 0 3313 3256 395 286 112 12 chr13 68835765 68835926 -50908972 - MIR SINE MIR -4 258 82 222 224 143 61 chr13 68836177 68836275 -50908623 - MIR SINE MIR 0 262 157 3455 124 85 85 chr13 68836275 68837206 -50907692 + pTR5 LTR ERV1 751 2009 -429 226 219 52 62 chr13 68837206 68837302 -50907596 + MER51A LTR ERV1 465 559 -75 1554 82 0 9 chr13 68837311 68837531 -50907367 + pTR5 LTR ERV1 172 389 -2049 311 294 185 0 chr13 68837531 68837650 -50907248 - MIR SINE MIR -90 172 32 302 262 27 81 chr13 68837723 68837872 -50907026 + MER97b DNA MER1_type? 39 179 -874 310 203 31 0 chr13 68838453 68838517 -50906381 - L2 LINE L2 -5 3308 3243 1029 231 51 105 chr13 68838524 68839056 -50905842 - MLT1D LTR MaLR -2 503 1 764 197 12 9 chr13 68839294 68839586 -50905312 - MLT1A1 LTR MaLR -2 363 10 206 274 5 0 chr13 68839663 68839742 -50905156 - L2 LINE L2 -332 2940 2861 305 336 39 0 chr13 68840273 68840377 -50904521 - L2 LINE L2 -1 3271 3164 453 279 100 32 chr13 68841596 68841786 -50903112 + MIR SINE MIR 60 262 0 21 36 0 0 chr13 68842629 68842657 -50902241 + AT_rich Low_complexity Low_complexity 1 28 0 370 303 52 52 chr13 68843458 68843613 -50901285 - L2 LINE L2 -2 3270 3116 1883 118 20 106 chr13 68843781 68844178 -50900720 + THE1B LTR MaLR 2 364 0 11043 106 15 0 chr13 68844178 68845734 -50899164 + THE1B-int LTR MaLR 1 1580 0 1029 164 48 97 chr13 68845734 68846195 -50898703 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr13 68846808 68846832 -50898066 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 68847223 68847246 -50897652 + (TG)n Simple_repeat Simple_repeat 2 24 0 32 57 0 0 chr13 68847776 68847829 -50897069 + AT_rich Low_complexity Low_complexity 1 53 0 288 70 0 0 chr13 68849099 68849142 -50895756 + (CA)n Simple_repeat Simple_repeat 2 44 0 1424 176 0 0 chr13 68849208 68849429 -50895469 + AluJb SINE Alu 15 235 -77 21 36 0 0 chr13 68849450 68849478 -50895420 + AT_rich Low_complexity Low_complexity 1 28 0 212 309 0 49 chr13 68849706 68849787 -50895111 + MIR SINE MIR 91 149 -59 1044 289 136 25 chr13 68849817 68850295 -50894603 - MLT1H LTR MaLR -16 533 3 302 345 18 9 chr13 68850378 68850491 -50894407 - MIR SINE MIR -61 147 34 38 0 0 0 chr13 68850672 68850710 -50894188 + AT_rich Low_complexity Low_complexity 1 38 0 219 269 26 26 chr13 68851757 68851835 -50893063 + MER5A DNA MER1_type 88 165 -24 268 236 42 0 chr13 68853979 68854051 -50890847 + (TATG)n Simple_repeat Simple_repeat 1 75 0 244 317 35 62 chr13 68855105 68855250 -50889648 - L2 LINE L2 -549 2765 2625 196 340 46 59 chr13 68855269 68855422 -50889476 - L2 LINE L2 -847 2467 2317 413 322 20 7 chr13 68856023 68856172 -50888726 + LTR16A1 LTR ERVL 307 457 0 1929 210 35 79 chr13 68856369 68856949 -50887949 + MLT2B3 LTR ERVL 1 554 0 243 271 17 0 chr13 68856963 68857022 -50887876 + (TATG)n Simple_repeat Simple_repeat 3 62 0 646 302 30 37 chr13 68857042 68857310 -50887588 - MLT1K LTR MaLR 0 588 323 1198 271 106 61 chr13 68857323 68858228 -50886670 - HAL1 LINE L1 -976 1531 586 1581 264 51 21 chr13 68858336 68858862 -50886036 - MLT1F LTR MaLR 0 542 1 258 32 0 0 chr13 68858983 68859014 -50885884 + (CA)n Simple_repeat Simple_repeat 2 32 0 2104 235 49 16 chr13 68859434 68859983 -50884915 - L1MC3 LINE L1 -171 7614 7048 5772 159 56 30 chr13 68859996 68861165 -50883733 - Tigger3b DNA MER2_type -32 1199 1 206 240 20 0 chr13 68861165 68861215 -50883683 + (CATA)n Simple_repeat Simple_repeat 3 53 0 25 51 0 0 chr13 68861215 68861254 -50883644 + AT_rich Low_complexity Low_complexity 1 39 0 1742 266 26 0 chr13 68861270 68861732 -50883166 - L1MC3 LINE L1 -820 6965 6492 201 39 0 0 chr13 68861863 68861889 -50883009 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 351 331 38 6 chr13 68862701 68862861 -50882037 + MIR SINE MIR 92 256 -6 1892 98 42 25 chr13 68863179 68863465 -50881433 + AluSq SINE Alu 1 291 -22 299 295 137 39 chr13 68864740 68865025 -50879873 - MLT1H LTR MaLR -4 545 233 2470 195 111 35 chr13 68865289 68865910 -50878988 - L1MB1 LINE L1 -57 6132 5465 868 243 68 74 chr13 68865913 68866280 -50878618 - MLT1A1 LTR MaLR 0 365 1 2732 264 28 24 chr13 68866280 68866619 -50878279 - MLT1A1-int LTR MaLR 0 1735 1399 1937 130 0 17 chr13 68866619 68866911 -50877987 + AluSc SINE Alu 1 287 -22 2732 264 28 24 chr13 68866911 68867241 -50877657 - MLT1A1-int LTR MaLR -336 1399 1063 757 250 92 63 chr13 68867241 68867525 -50877373 - MLT1A1 LTR MaLR -70 295 4 2200 171 49 26 chr13 68867532 68868080 -50876818 - L1MB1 LINE L1 -743 5403 4901 2167 98 0 0 chr13 68868322 68868618 -50876280 - AluSc SINE Alu -13 296 1 22 35 0 0 chr13 68870032 68870061 -50874837 + AT_rich Low_complexity Low_complexity 1 29 0 298 186 14 0 chr13 68870546 68870616 -50874282 - L1MA8 LINE L1 -130 6161 6091 764 204 7 0 chr13 68870639 68870786 -50874112 - L1MA8 LINE L1 -174 6117 5970 368 343 75 0 chr13 68871030 68871164 -50873734 - MIR SINE MIR -93 169 26 1045 323 39 28 chr13 68871351 68871727 -50873171 + LTR16B LTR ERVL 24 407 -57 2413 122 11 3 chr13 68871727 68872088 -50872810 + THE1B LTR MaLR 1 364 0 1045 323 39 28 chr13 68872088 68872145 -50872753 + LTR16B LTR ERVL 407 462 -2 24 0 0 0 chr13 68872439 68872463 -50872435 + AT_rich Low_complexity Low_complexity 1 24 0 232 97 97 10 chr13 68873375 68873478 -50871420 + (TA)n Simple_repeat Simple_repeat 2 113 0 409 62 112 12 chr13 68873494 68873655 -50871243 + (TA)n Simple_repeat Simple_repeat 2 178 0 2027 101 10 27 chr13 68873656 68873953 -50870945 + AluSc SINE Alu 1 292 -17 225 94 0 0 chr13 68873956 68873988 -50870910 + (TA)n Simple_repeat Simple_repeat 1 32 0 1688 187 31 79 chr13 68874293 68874747 -50870151 + MSTB1 LTR MaLR 1 432 0 222 292 0 44 chr13 68875560 68875697 -50869201 + CT-rich Low_complexity Low_complexity 4 134 0 511 333 57 61 chr13 68876322 68876619 -50868279 - L2 LINE L2 -1 3271 2976 314 378 53 20 chr13 68876778 68877024 -50867874 - L2 LINE L2 -445 2869 2616 2131 90 7 10 chr13 68877467 68877756 -50867142 + AluSp SINE Alu 1 288 -25 414 0 0 0 chr13 68877765 68877811 -50867087 + (TAAAA)n Simple_repeat Simple_repeat 3 48 0 760 289 11 0 chr13 68878578 68878758 -50866140 + MIR SINE MIR 49 230 -32 218 250 8 16 chr13 68879443 68879574 -50865324 + CT-rich Low_complexity Low_complexity 1 129 0 670 230 13 51 chr13 68879593 68879769 -50865129 + MIR3 SINE MIR 18 187 -21 25 90 0 0 chr13 68879873 68879940 -50864958 + AT_rich Low_complexity Low_complexity 1 67 0 2291 70 0 29 chr13 68882193 68882507 -50862391 - AluY SINE Alu -6 305 1 23 33 0 0 chr13 68882680 68882710 -50862188 + AT_rich Low_complexity Low_complexity 1 30 0 338 235 59 0 chr13 68884518 68884603 -50860295 + LTR52 LTR ERVL 328 417 -4 25 0 0 0 chr13 68884754 68884779 -50860119 + AT_rich Low_complexity Low_complexity 1 25 0 563 368 24 4 chr13 68884937 68885187 -50859711 - MIR SINE MIR -2 260 6 3142 174 38 40 chr13 68886584 68887291 -50857607 + MER67C LTR ERV1 1 706 -4 1215 231 7 26 chr13 68887882 68888189 -50856709 - AluJo SINE Alu -1 301 1 2171 122 51 25 chr13 68889328 68889681 -50855217 - THE1B LTR MaLR -2 362 1 10836 115 2 29 chr13 68889686 68891305 -50853593 - THE1B-int LTR MaLR -5 1575 1 2201 118 51 25 chr13 68891305 68891660 -50853238 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr13 68891755 68891776 -50853122 + AT_rich Low_complexity Low_complexity 1 21 0 3904 154 25 68 chr13 68891877 68891915 -50852983 + L1PB4 LINE L1 5327 5365 -804 2348 89 0 3 chr13 68891915 68892218 -50852680 + AluSp SINE Alu 1 302 -11 3904 154 25 68 chr13 68892218 68893059 -50851839 + L1PB4 LINE L1 5365 6169 0 22 35 0 0 chr13 68893504 68893533 -50851365 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 68894031 68894060 -50850838 + AT_rich Low_complexity Low_complexity 1 29 0 258 0 0 67 chr13 68894170 68894215 -50850683 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 26 0 0 0 chr13 68894216 68894242 -50850656 + AT_rich Low_complexity Low_complexity 1 26 0 329 275 47 38 chr13 68896926 68897162 -50847736 - HAL1 LINE L1 -296 2211 1974 609 301 70 60 chr13 68897287 68898156 -50846742 - HAL1 LINE L1 -793 1714 674 2796 137 5 2 chr13 68898156 68898580 -50846318 - MER61B LTR ERV1 0 425 1 609 301 70 60 chr13 68898580 68898621 -50846277 - HAL1 LINE L1 -1833 674 635 567 277 31 0 chr13 68898685 68898815 -50846083 - MER45A DNA AcHobo -44 134 1 1029 139 0 0 chr13 68899023 68899196 -50845702 + (TA)n Simple_repeat Simple_repeat 1 173 0 697 143 9 0 chr13 68899196 68899301 -50845597 + Tigger3(Golem) DNA MER2_type 2924 3029 0 295 311 30 43 chr13 68899339 68899503 -50845395 - HAL1 LINE L1 -2023 484 323 442 245 11 0 chr13 68899632 68899726 -50845172 + MER82 DNA MER2_type 1 95 -558 292 333 58 29 chr13 68899751 68899922 -50844976 - MIR SINE MIR -56 206 31 678 217 0 0 chr13 68900039 68900159 -50844739 + MER82 DNA MER2_type 534 653 0 1937 125 25 0 chr13 68900387 68900667 -50844231 + AluSx SINE Alu 1 287 -25 40 0 0 0 chr13 68900667 68900707 -50844191 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr13 68900788 68900821 -50844077 + AT_rich Low_complexity Low_complexity 1 33 0 1490 208 0 17 chr13 68901019 68901312 -50843586 + AluJo SINE Alu 1 288 -24 22 35 0 0 chr13 68901843 68901872 -50843026 + AT_rich Low_complexity Low_complexity 1 29 0 1498 99 24 0 chr13 68902383 68902595 -50842303 + AluSc SINE Alu 2 218 -91 482 259 76 76 chr13 68902918 68903180 -50841718 + LTR48B LTR ERV1 383 644 0 391 307 80 19 chr13 68903195 68903407 -50841491 - L1ME LINE L1 -349 5772 5548 756 227 19 39 chr13 68903573 68903780 -50841118 - MER20 DNA MER1_type 0 219 17 27 62 0 0 chr13 68904070 68904118 -50840780 + AT_rich Low_complexity Low_complexity 1 48 0 241 376 9 0 chr13 68904740 68904849 -50840049 - MIR3 SINE MIR -31 177 68 2291 84 0 19 chr13 68904877 68905187 -50839711 + AluSp SINE Alu 1 304 -9 36 0 0 0 chr13 68905466 68905502 -50839396 + AT_rich Low_complexity Low_complexity 1 36 0 37 39 0 0 chr13 68906438 68906489 -50838409 + AT_rich Low_complexity Low_complexity 1 51 0 1783 128 97 31 chr13 68906686 68907038 -50837860 + THE1C LTR MaLR 1 375 0 32 75 0 0 chr13 68907039 68907106 -50837792 + AT_rich Low_complexity Low_complexity 1 67 0 367 313 67 22 chr13 68907979 68908158 -50836740 - LTR33 LTR ERVL -231 290 104 748 315 116 17 chr13 68908270 68908676 -50836222 + L2 LINE L2 1269 1714 -1600 500 252 12 82 chr13 68908683 68908885 -50836013 + LTR40a LTR ERVL 1 190 -272 496 267 27 40 chr13 68909097 68909247 -50835651 + LTR40b LTR ERVL 270 417 -45 2418 294 99 28 chr13 68909308 68910242 -50834656 + L2 LINE L2 1746 2791 -522 2044 118 3 16 chr13 68910242 68910556 -50834342 + AluSg SINE Alu 1 310 0 2418 294 99 28 chr13 68910556 68910821 -50834077 + L2 LINE L2 2791 3036 -277 1710 187 70 53 chr13 68911232 68911687 -50833211 + MLT1C LTR MaLR 3 465 -2 5863 119 14 11 chr13 68912034 68912939 -50831959 - L1PA14 LINE L1 0 6161 5254 337 286 154 26 chr13 68913949 68914176 -50830722 - LTR16A1 LTR ERVL 0 457 202 2109 115 7 0 chr13 68914387 68914675 -50830223 - AluSc SINE Alu -19 290 1 22 35 0 0 chr13 68915060 68915089 -50829809 + AT_rich Low_complexity Low_complexity 1 29 0 699 195 0 0 chr13 68915131 68915259 -50829639 - AluJo SINE Alu -178 134 7 186 191 21 43 chr13 68915323 68915370 -50829528 + MIR SINE MIR 107 152 -110 21 57 0 0 chr13 68916443 68916478 -50828420 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 68916858 68916879 -50828019 + AT_rich Low_complexity Low_complexity 1 21 0 2072 109 4 0 chr13 68917252 68917526 -50827372 + AluSg SINE Alu 17 291 -19 1065 186 0 10 chr13 68917533 68917732 -50827166 + L1MA9 LINE L1 6072 6268 -44 278 256 12 47 chr13 68917972 68918058 -50826840 + L2 LINE L2 3227 3309 -4 32 57 0 0 chr13 68918060 68918113 -50826785 + AT_rich Low_complexity Low_complexity 1 53 0 2400 268 59 58 chr13 68919450 68919746 -50825152 + L1ME2 LINE L1 236 530 -5866 1117 242 137 8 chr13 68919746 68920097 -50824801 - MSTD LTR MaLR 0 396 1 2400 268 59 58 chr13 68920097 68921032 -50823866 + L1ME2 LINE L1 530 1469 -4927 1327 127 15 0 chr13 68921032 68921229 -50823669 + AluSq SINE Alu 102 301 -12 925 256 129 31 chr13 68921418 68922087 -50822811 + L1ME2 LINE L1 1790 2523 -3873 247 292 43 32 chr13 68922083 68922268 -50822630 + L1ME2 LINE L1 3158 3344 -2871 * 1082 174 191 20 chr13 68922274 68922567 -50822331 + MER61A LTR ERV1 1 343 0 1914 179 47 22 chr13 68922567 68923197 -50821701 + MER61A-int LTR ERV1 1 777 -4440 21541 100 45 18 chr13 68923235 68926870 -50818028 + MER61A-int LTR ERV1 1411 5216 -1 2067 122 24 12 chr13 68926872 68927209 -50817689 + MER61A LTR ERV1 3 343 0 678 317 58 16 chr13 68927209 68927591 -50817307 + L1ME2 LINE L1 3340 3737 -2478 373 236 264 0 chr13 68927602 68927708 -50817190 + MLT1E LTR MaLR 2 135 -458 819 301 98 0 chr13 68927709 68927945 -50816953 + MLT1E LTR MaLR 335 593 0 1684 203 48 24 chr13 68928019 68928394 -50816504 - MLT1B LTR MaLR -6 384 1 2796 268 69 34 chr13 68928395 68930669 -50814229 + L1ME2 LINE L1 3796 6379 -24 210 309 0 0 chr13 68932184 68932226 -50812672 - L2 LINE L2 -256 3057 3016 514 263 95 62 chr13 68932471 68932775 -50812123 - MER46C DNA MER2_type -24 314 1 240 35 0 0 chr13 68933043 68933072 -50811826 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 308 305 11 0 chr13 68933765 68933860 -50811038 + MIR SINE MIR 36 131 -131 30 69 0 0 chr13 68934623 68934681 -50810217 + AT_rich Low_complexity Low_complexity 1 58 0 524 330 148 32 chr13 68935186 68935819 -50809079 - L2 LINE L2 -778 2536 1830 2530 149 128 39 chr13 68935842 68936411 -50808487 + LTR29 LTR ERV1 1 620 -2 2950 217 114 77 chr13 68936413 68937067 -50807831 + LTR29-int LTR ERV1 1 629 -5702 1947 120 3 65 chr13 68937067 68937392 -50807506 - AluSq SINE Alu -7 306 2 2950 217 114 77 chr13 68937392 68938101 -50806797 + LTR29-int LTR ERV1 629 1415 -4916 266 220 46 73 chr13 68938170 68938279 -50806619 - LTR27 LTR ERV1 -4 632 527 382 274 19 0 chr13 68938336 68938442 -50806456 - LTR28 LTR ERV1 -69 951 844 3799 183 29 6 chr13 68938489 68939184 -50805714 - MER50 LTR ERV1 -23 711 1 3671 166 35 79 chr13 68939185 68940258 -50804640 + LTR29-int LTR ERV1 2562 4335 -1900 971 185 98 84 chr13 68940258 68940466 -50804432 - MSTA LTR MaLR 0 428 213 369 0 0 0 chr13 68940466 68940507 -50804391 + (CA)n Simple_repeat Simple_repeat 2 42 0 971 185 98 84 chr13 68940507 68940585 -50804313 - MSTA LTR MaLR -215 213 138 771 176 40 7 chr13 68940601 68940749 -50804149 - LOR1-int LTR ERV1 -2440 5680 5528 490 198 10 10 chr13 68940753 68940849 -50804049 - MSTA LTR MaLR -332 96 1 6151 155 41 16 chr13 68940849 68942032 -50802866 + LTR29-int LTR ERV1 4331 5542 -789 281 366 90 8 chr13 68942807 68942941 -50801957 + MIR SINE MIR 19 163 -99 1460 236 122 40 chr13 68942941 68943416 -50801482 + MER67D LTR ERV1 1 514 0 318 230 27 0 chr13 68943416 68943490 -50801408 + MIR SINE MIR 160 235 -27 180 152 0 0 chr13 68943639 68943672 -50801226 + (TG)n Simple_repeat Simple_repeat 2 34 0 1880 129 102 12 chr13 68944577 68944919 -50799979 - THE1C LTR MaLR -2 373 1 443 266 94 41 chr13 68945279 68945523 -50799375 - L1M4 LINE L1 -1517 4629 4373 827 266 73 23 chr13 68946016 68946616 -50798282 + L1MDa LINE L1 2349 2984 -3556 4597 93 26 39 chr13 68946616 68947313 -50797585 - LTR12 LTR ERV1 0 688 1 827 266 73 23 chr13 68947313 68947347 -50797551 + L1MDa LINE L1 2984 3015 -3525 1193 241 110 24 chr13 68947347 68947728 -50797170 + MLT2D LTR ERVL 1 414 0 1332 195 39 25 chr13 68947874 68948156 -50796742 + AluJo SINE Alu 3 288 -24 297 0 0 0 chr13 68948172 68948205 -50796693 + (TG)n Simple_repeat Simple_repeat 2 34 0 505 158 105 0 chr13 68948211 68948325 -50796573 - L1MC2 LINE L1 -25 6319 6194 * 1530 194 22 12 chr13 68948322 68948641 -50796257 + L1MC2 LINE L1 5868 6189 -155 658 323 26 16 chr13 68949232 68949485 -50795413 - MIR SINE MIR -4 258 4 3314 140 18 0 chr13 68949486 68950029 -50794869 + L1PA5 LINE L1 5595 6147 -7 633 261 151 68 chr13 68950347 68950772 -50794126 - MLT1J LTR MaLR -35 476 17 1765 164 0 19 chr13 68950916 68951228 -50793670 - AluSx SINE Alu -2 310 5 252 173 0 37 chr13 68951310 68951391 -50793507 + (TA)n Simple_repeat Simple_repeat 2 79 0 219 349 47 9 chr13 68951861 68951967 -50792931 - MIR SINE MIR -101 161 52 2071 149 11 29 chr13 68952022 68952404 -50792494 - THE1C LTR MaLR 0 375 1 313 256 161 36 chr13 68952797 68952965 -50791933 + MER53 DNA DNA 1 189 0 34 0 0 0 chr13 68953770 68953804 -50791094 + AT_rich Low_complexity Low_complexity 1 34 0 234 91 0 0 chr13 68954504 68954537 -50790361 + (TA)n Simple_repeat Simple_repeat 2 34 0 1724 182 0 0 chr13 68957063 68957359 -50787539 + AluJb SINE Alu 1 296 -16 934 217 0 0 chr13 68958124 68958285 -50786613 - MER58A DNA MER1_type 0 166 6 242 239 0 42 chr13 68958952 68959023 -50785875 - MER115 DNA AcHobo -9 684 617 1678 246 218 25 chr13 68959055 68960074 -50784824 - Zaphod DNA AcHobo -64 3967 2752 228 170 19 38 chr13 68960758 68960811 -50784087 - MLT1J LTR MaLR -69 442 391 309 293 83 79 chr13 68961126 68961379 -50783519 + LTR67 LTR ERVL 85 338 -219 2591 201 13 6 chr13 68961444 68962097 -50782801 - MER67C LTR ERV1 -2 708 1 235 320 120 40 chr13 68962241 68962416 -50782482 - MIR SINE MIR -59 203 15 405 70 0 0 chr13 68962584 68962641 -50782257 + (TG)n Simple_repeat Simple_repeat 2 58 0 366 335 52 26 chr13 68963013 68963204 -50781694 - MLT1J LTR MaLR -92 419 224 263 240 40 13 chr13 68963544 68963619 -50781279 + LTR67 LTR ERVL 433 509 -48 34 0 0 0 chr13 68963925 68963959 -50780939 + AT_rich Low_complexity Low_complexity 1 34 0 367 237 11 102 chr13 68965962 68966139 -50778759 + L1M4 LINE L1 3883 4043 -2103 3942 87 29 2 chr13 68967914 68968476 -50776422 - L1PA11 LINE L1 -2 6172 5596 23 33 0 0 chr13 68968959 68968989 -50775909 + AT_rich Low_complexity Low_complexity 1 30 0 278 341 36 0 chr13 68969305 68969443 -50775455 + MIR SINE MIR 72 214 -48 2498 71 0 0 chr13 68970411 68970722 -50774176 - AluSp SINE Alu -2 311 1 31 0 0 0 chr13 68970844 68970875 -50774023 + AT_rich Low_complexity Low_complexity 1 31 0 1876 107 0 0 chr13 68971166 68971475 -50773423 - AluSx SINE Alu 0 329 21 438 262 24 42 chr13 68971506 68971674 -50773224 + L2 LINE L2 3112 3276 -37 25 51 0 0 chr13 68971937 68971976 -50772922 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr13 68973646 68973676 -50771222 + AT_rich Low_complexity Low_complexity 1 30 0 203 100 0 50 chr13 68974465 68974505 -50770393 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 1696 186 3 0 chr13 68974751 68975046 -50769852 - AluJb SINE Alu -14 298 3 219 192 19 0 chr13 68975547 68975599 -50769299 + (TA)n Simple_repeat Simple_repeat 2 54 0 205 308 125 0 chr13 68976010 68976114 -50768784 - MIR SINE MIR -97 165 49 23 54 0 0 chr13 68976403 68976440 -50768458 + AT_rich Low_complexity Low_complexity 1 37 0 237 300 17 0 chr13 68977248 68977308 -50767590 + L2 LINE L2 3197 3257 -15 8169 203 39 15 chr13 68977350 68980093 -50764805 + L1PA16 LINE L1 3356 6165 -1 448 295 142 19 chr13 68980438 68980706 -50764192 - L2 LINE L2 -601 2713 2413 1452 217 84 18 chr13 68980706 68981077 -50763821 - MSTD LTR MaLR 0 428 1 654 314 69 22 chr13 68981139 68981416 -50763482 - L2 LINE L2 -1840 1474 1185 9907 158 24 1 chr13 68981421 68983106 -50761792 - Tigger1 DNA MER2_type 0 2418 695 6115 257 35 25 chr13 68983109 68986232 -50758666 - L1PBb LINE L1 -2256 4593 1360 236 283 11 11 chr13 68986240 68986332 -50758566 - L1PBb LINE L1 -5285 1564 1473 374 350 85 71 chr13 68987053 68987561 -50757337 - L1PBb LINE L1 -6318 532 18 2203 138 28 6 chr13 68987562 68987918 -50756980 - THE1B LTR MaLR 0 364 1 9687 129 18 31 chr13 68987918 68989519 -50755379 - THE1B-int LTR MaLR 0 1580 1 2419 120 19 6 chr13 68989519 68989878 -50755020 - THE1B LTR MaLR 0 364 1 221 255 205 43 chr13 68989880 68990041 -50754857 - MIR3 SINE MIR -12 196 10 2423 193 19 6 chr13 68990097 68990569 -50754329 - Tigger1 DNA MER2_type -1927 491 14 672 326 68 4 chr13 68990587 68990866 -50754032 - L2 LINE L2 -2138 1176 880 351 77 19 0 chr13 68991620 68991672 -50753226 - MADE1 DNA Mariner -26 54 2 28 0 0 0 chr13 68991818 68991846 -50753052 + AT_rich Low_complexity Low_complexity 1 28 0 2198 129 0 0 chr13 68992428 68992739 -50752159 - AluSq SINE Alu 0 313 3 7067 47 11 0 chr13 68992810 68994312 -50750586 - L1PA5 LINE L1 -1 6153 4635 734 257 25 40 chr13 68994312 68994514 -50750384 + MER20 DNA MER1_type 9 207 -12 26 0 0 0 chr13 68994871 68994897 -50750001 + AT_rich Low_complexity Low_complexity 1 26 0 239 361 37 19 chr13 68995027 68995135 -50749763 - MIR SINE MIR -77 131 22 25 31 0 0 chr13 68997503 68997535 -50747363 + AT_rich Low_complexity Low_complexity 1 32 0 889 186 109 23 chr13 68997541 68997785 -50747113 + L1MB1 LINE L1 5918 6180 0 189 0 0 0 chr13 68998129 68998150 -50746748 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 234 295 12 76 chr13 68998225 68998474 -50746424 - HsTC2 DNA Tc2 -1308 590 360 25 31 0 0 chr13 68998712 68998744 -50746154 + AT_rich Low_complexity Low_complexity 1 32 0 2004 75 0 15 chr13 68999333 68999633 -50745265 + AluY SINE Alu 29 324 0 2763 219 27 21 chr13 68999718 68999763 -50745135 + MER82 DNA MER2_type 23 66 -587 1807 182 31 0 chr13 68999763 69000114 -50744784 - MER47A DNA MER2_type -1 365 4 2763 219 27 21 chr13 69000114 69000690 -50744208 + MER82 DNA MER2_type 66 648 -5 326 107 18 0 chr13 69000978 69001034 -50743864 + (TA)n Simple_repeat Simple_repeat 1 57 0 230 318 0 16 chr13 69001167 69001230 -50743668 - MLT1K LTR MaLR -197 391 330 2018 184 104 2 chr13 69001527 69001967 -50742931 + L1MB3 LINE L1 5695 6179 -4 11852 30 1 0 chr13 69001983 69003402 -50741496 - L1P LINE L1 -859 5287 3868 2169 55 0 0 chr13 69003402 69003669 -50741229 + L1PA4 LINE L1 5882 6150 0 1958 99 10 51 chr13 69003669 69003962 -50740936 - AluY SINE Alu -30 281 1 14449 29 0 4 chr13 69004230 69006736 -50738162 + L1PA3 LINE L1 3650 6155 0 1993 142 47 33 chr13 69007175 69007534 -50737364 - THE1B LTR MaLR 0 364 1 10356 110 20 12 chr13 69007534 69009102 -50735796 - THE1B-int LTR MaLR 0 1580 1 1903 157 51 28 chr13 69009102 69009458 -50735440 - THE1B LTR MaLR 0 364 1 1107 336 83 58 chr13 69009805 69010365 -50734533 - L2 LINE L2 -562 2752 2207 1246 219 81 98 chr13 69010365 69010894 -50734004 - MLT2B1 LTR ERVL 0 520 1 1107 336 83 58 chr13 69010894 69010995 -50733903 - L2 LINE L2 -1107 2207 2110 2158 119 3 0 chr13 69010995 69011305 -50733593 + AluSq SINE Alu 1 311 -2 1107 336 83 58 chr13 69011305 69011488 -50733410 - L2 LINE L2 -1204 2110 1886 975 296 85 10 chr13 69011574 69011972 -50732926 - L2 LINE L2 -1894 1420 993 1402 118 55 9 chr13 69012887 69013107 -50731791 - MER30 DNA MER1_type 0 230 1 26 74 0 0 chr13 69014079 69014133 -50730765 + AT_rich Low_complexity Low_complexity 1 54 0 205 171 0 0 chr13 69014738 69014773 -50730125 + (CAT)n Simple_repeat Simple_repeat 1 35 0 1839 114 8 8 chr13 69014931 69015195 -50729703 + AluSq SINE Alu 45 308 -5 273 347 16 0 chr13 69015960 69016123 -50728775 + (TATG)n Simple_repeat Simple_repeat 1 165 0 22 0 0 0 chr13 69016321 69016343 -50728555 + AT_rich Low_complexity Low_complexity 1 22 0 631 308 48 77 chr13 69017919 69018335 -50726563 + L2 LINE L2 392 795 -2519 8154 222 51 41 chr13 69018359 69018655 -50726243 - L1MB1 LINE L1 -2 6166 5874 2051 205 19 14 chr13 69018655 69019079 -50725819 + MSTB LTR MaLR 1 426 0 8154 222 51 41 chr13 69019079 69020696 -50724202 - L1MB1 LINE L1 -294 5874 4176 237 33 0 0 chr13 69020696 69020726 -50724172 + (TG)n Simple_repeat Simple_repeat 1 30 0 8154 222 51 41 chr13 69020726 69022100 -50722798 - L1MB1 LINE L1 -1992 4176 2817 24 67 0 0 chr13 69022738 69022783 -50722115 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr13 69024334 69024362 -50720536 + AT_rich Low_complexity Low_complexity 1 28 0 420 266 48 0 chr13 69024669 69024793 -50720105 - MER94 DNA DNA 0 134 5 238 321 38 0 chr13 69025281 69025387 -50719511 - L1ME LINE L1 -364 5798 5689 22 0 0 0 chr13 69025499 69025521 -50719377 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 69025928 69025950 -50718948 + AT_rich Low_complexity Low_complexity 1 22 0 229 270 16 16 chr13 69026048 69026111 -50718787 - MER5B DNA MER1_type -111 67 5 200 119 71 0 chr13 69027267 69027309 -50717589 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1743 204 69 8 chr13 69027315 69027692 -50717206 + L1PA16 LINE L1 5726 6125 -41 21 57 0 0 chr13 69028118 69028153 -50716745 + AT_rich Low_complexity Low_complexity 1 35 0 236 351 55 27 chr13 69028182 69028512 -50716386 - L1ME LINE L1 -266 5855 5517 1284 186 75 0 chr13 69028515 69028767 -50716131 + AluJb SINE Alu 26 296 -16 368 193 0 0 chr13 69028893 69028950 -50715948 - AluS SINE Alu -243 57 1 33 0 0 0 chr13 69028980 69029013 -50715885 + AT_rich Low_complexity Low_complexity 1 33 0 188 214 18 0 chr13 69029134 69029190 -50715708 + GA-rich Low_complexity Low_complexity 3 59 0 1516 180 79 22 chr13 69029311 69029666 -50715232 + THE1C LTR MaLR 1 375 0 766 178 83 70 chr13 69030261 69030337 -50714561 - MLT1B LTR MaLR -144 246 172 2248 59 7 23 chr13 69030337 69030642 -50714256 - AluY SINE Alu -11 300 1 766 178 83 70 chr13 69030642 69030807 -50714091 - MLT1B LTR MaLR -218 172 2 1687 232 24 26 chr13 69030808 69031230 -50713668 - MLT1B-int LTR MaLR 0 1735 1315 1415 206 18 22 chr13 69031320 69031397 -50713501 - MLT1B-int LTR MaLR -803 568 492 1384 130 26 30 chr13 69031397 69031628 -50713270 - MER30 DNA MER1_type 0 230 1 1415 206 18 22 chr13 69031628 69032003 -50712895 - MLT1B-int LTR MaLR -879 492 1 1286 221 40 63 chr13 69032003 69032320 -50712578 - MLT1B LTR MaLR 0 390 82 2399 55 0 3 chr13 69032320 69032611 -50712287 + AluY SINE Alu 2 291 -20 1286 221 40 63 chr13 69032611 69032692 -50712206 - MLT1B LTR MaLR -308 82 1 24 0 0 0 chr13 69034370 69034394 -50710504 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr13 69034772 69034802 -50710096 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr13 69036276 69036298 -50708600 + AT_rich Low_complexity Low_complexity 1 22 0 201 353 40 40 chr13 69036594 69036635 -50708263 + L2 LINE L2 253 293 -3021 1873 152 6 19 chr13 69036635 69036951 -50707947 - AluSx SINE Alu 0 312 1 201 353 40 40 chr13 69036951 69037059 -50707839 + L2 LINE L2 292 402 -2912 255 133 0 0 chr13 69040390 69040435 -50704463 + (TG)n Simple_repeat Simple_repeat 2 46 0 523 330 187 45 chr13 69041135 69042043 -50702855 + L2 LINE L2 882 1918 -1396 201 185 56 0 chr13 69042649 69042703 -50702195 + (TTTAA)n Simple_repeat Simple_repeat 1 57 0 236 277 15 0 chr13 69042713 69042778 -50702120 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 344 284 53 77 chr13 69043043 69043328 -50701570 - L1 LINE L1 -2198 3948 3671 2198 117 0 3 chr13 69043372 69043680 -50701218 + AluSc SINE Alu 1 307 -2 22 56 0 0 chr13 69043771 69043807 -50701091 + AT_rich Low_complexity Low_complexity 1 36 0 370 350 100 0 chr13 69044770 69044950 -50699948 + MIR SINE MIR 59 256 -6 345 318 58 75 chr13 69045299 69045658 -50699240 - L2 LINE L2 -33 3239 2887 2207 96 19 16 chr13 69045754 69046066 -50698832 - AluSq SINE Alu 0 313 1 415 283 100 33 chr13 69046974 69047214 -50697684 + L2 LINE L2 2477 2732 -582 220 294 155 16 chr13 69048068 69048255 -50696643 + L2 LINE L2 2851 3063 -250 385 325 125 10 chr13 69048967 69049167 -50695731 - MIR SINE MIR -3 259 37 303 114 0 0 chr13 69049426 69049470 -50695428 + MIR SINE MIR 80 123 -139 467 257 79 14 chr13 69049672 69049812 -50695086 + MIR SINE MIR 95 243 -19 284 220 88 55 chr13 69050294 69050385 -50694513 + MIR SINE MIR 114 207 -55 269 259 19 56 chr13 69050408 69050516 -50694382 - MER94 DNA DNA -30 104 1 226 159 0 0 chr13 69051135 69051179 -50693719 + L1P LINE L1 4840 4883 -1263 1289 125 5 0 chr13 69051282 69051474 -50693424 + AluSg/x SINE Alu 117 309 -1 21 0 0 0 chr13 69051579 69051600 -50693298 + AT_rich Low_complexity Low_complexity 1 21 0 1599 202 13 79 chr13 69051816 69052207 -50692691 - MLT1A1 LTR MaLR 0 365 1 387 105 0 0 chr13 69052409 69052466 -50692432 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 218 354 0 12 chr13 69053063 69053145 -50691753 - MER5A DNA MER1_type -5 184 104 3835 169 32 69 chr13 69054711 69055608 -50689290 - MER6 DNA MER2_type 0 865 2 387 0 0 0 chr13 69057173 69057216 -50687682 + (TG)n Simple_repeat Simple_repeat 2 44 0 30 59 0 0 chr13 69057622 69057673 -50687225 + AT_rich Low_complexity Low_complexity 1 51 0 5627 149 84 16 chr13 69057916 69059065 -50685833 + Tigger3b DNA MER2_type 3 1228 -3 209 32 0 32 chr13 69059143 69059174 -50685724 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1871 161 0 7 chr13 69059177 69059469 -50685429 - AluSx SINE Alu -22 290 1 273 361 158 24 chr13 69059887 69060222 -50684676 - L2 LINE L2 -467 2847 2468 227 318 70 16 chr13 69060767 69060896 -50684002 - L2 LINE L2 -1360 1954 1819 2257 70 0 13 chr13 69060917 69061215 -50683683 - AluY SINE Alu -17 294 1 381 89 0 0 chr13 69061332 69061388 -50683510 + Alu SINE Alu 252 307 -1 607 209 86 12 chr13 69061395 69061558 -50683340 - L1MA9 LINE L1 -67 6245 6071 3821 145 12 12 chr13 69062682 69063346 -50681552 - L1MA8 LINE L1 -3 6288 5625 2081 291 65 42 chr13 69063544 69064831 -50680067 + L1MC4a LINE L1 5274 6590 -1218 829 230 7 99 chr13 69064885 69065183 -50679715 + MLT2B1 LTR ERVL 185 457 -63 616 195 11 11 chr13 69065189 69065363 -50679535 + (CATA)n Simple_repeat Simple_repeat 4 177 0 240 143 0 61 chr13 69065363 69065412 -50679486 + MLT2D LTR ERVL 367 412 -2 720 249 65 0 chr13 69065417 69065586 -50679312 - ERVL LTR ERVL -4468 1296 1117 1305 249 109 53 chr13 69065586 69066308 -50678590 + L1MC4 LINE L1 6596 7358 -684 2943 214 48 12 chr13 69066391 69067032 -50677866 - Tigger6a DNA MER2_type -419 664 1 209 119 24 0 chr13 69068040 69068082 -50676816 + (TA)n Simple_repeat Simple_repeat 1 43 0 2305 97 0 3 chr13 69070571 69070871 -50674027 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr13 69071286 69071307 -50673591 + AT_rich Low_complexity Low_complexity 1 21 0 1010 222 13 34 chr13 69071384 69071618 -50673280 + L1MA9 LINE L1 5565 5793 -519 227 267 11 11 chr13 69071611 69071701 -50673197 - L1MC4 LINE L1 -1339 6703 6614 * 225 0 0 0 chr13 69071704 69071729 -50673169 + (CA)n Simple_repeat Simple_repeat 2 26 0 1484 232 50 42 chr13 69071746 69072221 -50672677 + L1MA9 LINE L1 5794 6272 -40 24 53 0 0 chr13 69072574 69072612 -50672286 + AT_rich Low_complexity Low_complexity 1 38 0 289 331 69 31 chr13 69073347 69073477 -50671421 - L2 LINE L2 0 3313 3179 202 132 26 0 chr13 69073671 69073709 -50671189 + T-rich Low_complexity Low_complexity 3 41 0 220 346 22 4 chr13 69073801 69073980 -50670918 - MIR SINE MIR -7 255 2 375 241 98 94 chr13 69074026 69074312 -50670586 - MER5C DNA MER1_type -37 287 1 1697 181 64 45 chr13 69075562 69075983 -50668915 - L1MC2 LINE L1 0 6344 5916 1483 194 48 117 chr13 69075998 69076518 -50668380 + MER67D LTR ERV1 23 506 -8 887 210 54 5 chr13 69076527 69076751 -50668147 - L1MC2 LINE L1 -427 5917 5683 * 1606 275 53 25 chr13 69076745 69077313 -50667585 - L1MCa LINE L1 -5822 604 21 2361 141 5 3 chr13 69077496 69077866 -50667032 - THE1C LTR MaLR 0 375 5 9213 127 33 50 chr13 69077870 69078097 -50666801 - THE1C-int LTR MaLR 0 1580 1351 2158 149 22 3 chr13 69078097 69078465 -50666433 - THE1C LTR MaLR 0 375 1 9213 127 33 50 chr13 69078465 69079843 -50665055 - THE1C-int LTR MaLR -229 1351 3 2095 151 19 14 chr13 69079845 69080216 -50664682 - THE1C LTR MaLR 0 375 3 28 29 0 0 chr13 69080300 69080335 -50664563 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr13 69081224 69081256 -50663642 + AT_rich Low_complexity Low_complexity 1 32 0 261 0 0 0 chr13 69081974 69082003 -50662895 + (CA)n Simple_repeat Simple_repeat 2 30 0 252 242 45 15 chr13 69082278 69082344 -50662554 - MLT1H LTR MaLR -392 157 90 1910 147 3 3 chr13 69084144 69084444 -50660454 - AluSx SINE Alu -12 300 1 465 263 26 19 chr13 69084475 69084519 -50660379 - L1MA10 LINE L1 -9 6325 6282 2367 252 94 25 chr13 69084519 69085740 -50659158 - L1ME1 LINE L1 -48 6187 4871 1668 260 66 14 chr13 69085730 69086503 -50658395 - L1ME1 LINE L1 -2845 3370 2558 * 523 311 25 0 chr13 69086534 69086820 -50658078 - L1ME1 LINE L1 -3874 2522 2230 377 189 33 0 chr13 69087099 69087189 -50657709 + L1MB1 LINE L1 6075 6167 -1 837 290 45 11 chr13 69087530 69087885 -50657013 - L1MC4 LINE L1 -444 7598 7232 544 282 94 92 chr13 69087938 69088031 -50656867 - L1MC4a LINE L1 -878 6930 6839 2276 110 0 0 chr13 69088031 69088332 -50656566 - AluSx SINE Alu -11 301 1 544 282 94 92 chr13 69088332 69088637 -50656261 - L1MC4a LINE L1 -969 6839 6528 7745 19 0 0 chr13 69088637 69089580 -50655318 - L1PA3 LINE L1 -2 6153 5211 544 282 94 92 chr13 69089580 69089659 -50655239 - L1MC4a LINE L1 -1280 6528 6451 1611 196 15 69 chr13 69089671 69090079 -50654819 - MLT1B LTR MaLR 0 390 5 1625 124 103 22 chr13 69090123 69090396 -50654502 - AluSg SINE Alu -13 297 3 25 51 0 0 chr13 69091621 69091660 -50653238 + AT_rich Low_complexity Low_complexity 1 39 0 462 297 132 15 chr13 69091717 69092050 -50652848 - L1ME3A LINE L1 -203 5967 5596 21 0 0 0 chr13 69092618 69092639 -50652259 + AT_rich Low_complexity Low_complexity 1 21 0 519 17 0 0 chr13 69092674 69092734 -50652164 + (TA)n Simple_repeat Simple_repeat 2 61 0 1943 121 3 32 chr13 69092753 69093066 -50651832 - AluSx SINE Alu -8 304 1 7522 193 48 14 chr13 69093104 69095792 -50649106 - L1PA16 LINE L1 -16 6150 3401 217 222 19 0 chr13 69095959 69096013 -50648885 + MIR SINE MIR 99 153 -109 642 255 25 19 chr13 69096461 69096622 -50648276 + AluJo SINE Alu 125 286 -26 194 226 0 38 chr13 69097171 69097224 -50647674 - L2 LINE L2 0 3272 3222 1183 258 43 43 chr13 69097609 69098509 -50646389 - L1MEc LINE L1 -1230 4985 1974 1258 256 65 56 chr13 69098535 69098981 -50645917 - MER74C LTR ERVL 0 460 11 22 0 0 0 chr13 69099368 69099390 -50645508 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 69099532 69099553 -50645345 + AT_rich Low_complexity Low_complexity 1 21 0 2226 64 0 11 chr13 69100053 69100400 -50644498 - AluY SINE Alu 0 346 3 5010 292 41 22 chr13 69101216 69102959 -50641939 - HERVL74 LTR ERVL -1004 4681 3048 2494 173 101 7 chr13 69102961 69103505 -50641393 - LTR49 LTR ERV1 0 595 1 6115 97 22 6 chr13 69103940 69104869 -50640029 + L1PA8 LINE L1 5226 6169 -3 203 61 30 0 chr13 69104872 69104905 -50639993 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 219 285 47 98 chr13 69105378 69105652 -50639246 + L2 LINE L2 3049 3308 -5 1832 263 55 13 chr13 69105652 69106177 -50638721 - MLT1E2 LTR MaLR 0 626 80 332 295 96 18 chr13 69106055 69106221 -50638677 - MLT2C1 LTR ERVL -179 218 40 * 300 27 0 0 chr13 69108339 69108376 -50636522 + (TG)n Simple_repeat Simple_repeat 2 38 0 662 250 54 22 chr13 69108377 69108561 -50636337 + MER63B DNA MER1_type 1 190 -246 1598 210 58 18 chr13 69108709 69109090 -50635808 - MSTD LTR MaLR 0 396 1 186 43 0 0 chr13 69111169 69111192 -50633706 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 69111616 69111637 -50633261 + AT_rich Low_complexity Low_complexity 1 21 0 26 74 0 0 chr13 69111734 69111788 -50633110 + AT_rich Low_complexity Low_complexity 1 54 0 27 49 0 0 chr13 69112048 69112089 -50632809 + AT_rich Low_complexity Low_complexity 1 41 0 27 0 0 0 chr13 69112339 69112366 -50632532 + AT_rich Low_complexity Low_complexity 1 27 0 2194 196 53 35 chr13 69112544 69113053 -50631845 + MLT2B1 LTR ERVL 1 518 -2 21 0 0 0 chr13 69113407 69113428 -50631470 + AT_rich Low_complexity Low_complexity 1 21 0 677 286 71 29 chr13 69114210 69114448 -50630450 + MIR SINE MIR 8 255 -7 432 257 47 47 chr13 69115846 69116017 -50628881 + MIR SINE MIR 68 238 -24 401 205 0 12 chr13 69116169 69116252 -50628646 + AluJb SINE Alu 208 289 -23 553 261 130 23 chr13 69116724 69116939 -50627959 - MIR SINE MIR -13 249 12 1179 72 0 0 chr13 69117054 69117207 -50627691 - AluSp/q SINE Alu 0 313 161 312 290 39 19 chr13 69117319 69117335 -50627563 + L1PA7 LINE L1 5768 5782 -372 971 190 43 0 chr13 69117335 69117546 -50627352 - L1MB1 LINE L1 -2 6166 5947 312 290 39 19 chr13 69117546 69117684 -50627214 + L1MB1 LINE L1 5782 5925 -229 * 952 161 35 0 chr13 69117547 69117721 -50627177 + L1MB1 LINE L1 5783 5962 -206 325 351 118 43 chr13 69118928 69119435 -50625463 - L2 LINE L2 -906 2408 1864 41 87 0 0 chr13 69119846 69119950 -50624948 + AT_rich Low_complexity Low_complexity 1 104 0 25 65 0 0 chr13 69120837 69120883 -50624015 + AT_rich Low_complexity Low_complexity 1 46 0 43 20 0 0 chr13 69121829 69121879 -50623019 + AT_rich Low_complexity Low_complexity 1 50 0 2241 143 8 11 chr13 69122125 69122490 -50622408 + THE1B LTR MaLR 1 364 0 10889 112 8 1 chr13 69122494 69124060 -50620838 + THE1B-int LTR MaLR 5 1580 0 2161 132 8 48 chr13 69124060 69124439 -50620459 + THE1B LTR MaLR 1 364 0 270 229 0 0 chr13 69124910 69124971 -50619927 + T-rich Low_complexity Low_complexity 4 64 0 369 0 0 0 chr13 69125277 69125318 -50619580 + (TG)n Simple_repeat Simple_repeat 1 41 0 197 240 13 0 chr13 69125730 69125805 -50619093 + CT-rich Low_complexity Low_complexity 2 77 0 191 393 34 29 chr13 69125952 69126158 -50618740 - L2 LINE L2 -517 2797 2591 1180 273 109 48 chr13 69127119 69128694 -50616204 + L1ME3 LINE L1 3808 5481 -693 1278 219 3 41 chr13 69128715 69129007 -50615891 + AluJo SINE Alu 23 303 -9 1174 276 84 14 chr13 69129015 69129526 -50615372 + L1ME3 LINE L1 5505 6051 -111 622 221 25 20 chr13 69130441 69130640 -50614258 - L1MDb LINE L1 -3097 3309 3110 * 1991 235 71 102 chr13 69130637 69131737 -50613161 - L1MDb LINE L1 -3654 2752 1619 2016 115 0 7 chr13 69131737 69132016 -50612882 + AluSc SINE Alu 1 277 -32 1991 235 71 102 chr13 69132016 69132034 -50612864 - L1MDb LINE L1 -4787 1619 1602 432 0 0 0 chr13 69132034 69132082 -50612816 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 1991 235 71 102 chr13 69132082 69132458 -50612440 - L1MDb LINE L1 -4804 1602 1216 1917 151 16 0 chr13 69132458 69132763 -50612135 - AluSx SINE Alu 0 312 3 1991 235 71 102 chr13 69132763 69133672 -50611226 - L1MDb LINE L1 -5190 1216 420 729 307 84 43 chr13 69133890 69134261 -50610637 - L1MDb LINE L1 -6007 402 17 241 275 22 11 chr13 69135352 69135443 -50609455 + Charlie2 DNA MER1_type 2771 2862 0 919 246 25 45 chr13 69135865 69136051 -50608847 + L1P LINE L1 4788 4976 -1170 504 0 0 0 chr13 69136051 69136107 -50608791 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 919 246 25 45 chr13 69136107 69136186 -50608712 + L1P LINE L1 4976 5047 -1099 1798 154 86 14 chr13 69136186 69136536 -50608362 + THE1C LTR MaLR 1 375 0 919 246 25 45 chr13 69136536 69136623 -50608275 + L1P LINE L1 5047 5134 -1012 22 94 0 0 chr13 69136807 69136871 -50608027 + AT_rich Low_complexity Low_complexity 1 64 0 7891 212 38 17 chr13 69137281 69140267 -50604631 - L1PA16 LINE L1 0 6166 3106 359 260 16 8 chr13 69141461 69141584 -50603314 + GA-rich Low_complexity Low_complexity 1 124 0 24 0 0 0 chr13 69141752 69141776 -50603122 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 69142356 69142376 -50602522 + (TA)n Simple_repeat Simple_repeat 2 21 0 372 344 169 10 chr13 69142561 69142756 -50602142 - MIR SINE MIR -31 231 6 1899 148 10 7 chr13 69143056 69143361 -50601537 + AluSq SINE Alu 1 306 -7 2434 66 3 0 chr13 69143663 69143965 -50600933 - AluY SINE Alu -8 303 1 28 0 0 0 chr13 69144923 69144951 -50599947 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 69145511 69145533 -50599365 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr13 69145830 69145868 -50599030 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr13 69146397 69146423 -50598475 + AT_rich Low_complexity Low_complexity 1 26 0 1454 243 59 4 chr13 69146465 69146971 -50597927 - L1MD3 LINE L1 -1 7994 7351 722 251 61 25 chr13 69146968 69147294 -50597604 - L1MC3 LINE L1 -681 7104 6767 * 29 0 0 0 chr13 69147308 69147337 -50597561 + AT_rich Low_complexity Low_complexity 1 29 0 47 44 0 0 chr13 69147730 69147798 -50597100 + AT_rich Low_complexity Low_complexity 1 68 0 825 245 112 1 chr13 69148011 69148378 -50596520 + MLT1D LTR MaLR 1 453 -52 23 54 0 0 chr13 69148384 69148421 -50596477 + AT_rich Low_complexity Low_complexity 1 37 0 51 88 0 16 chr13 69148841 69149023 -50595875 + AT_rich Low_complexity Low_complexity 1 179 0 241 208 0 0 chr13 69149280 69149328 -50595570 + MLT1D LTR MaLR 458 505 0 2673 129 24 22 chr13 69149354 69149818 -50595080 - MER4C LTR ERV1 0 465 1 23 0 0 0 chr13 69149877 69149900 -50594998 + AT_rich Low_complexity Low_complexity 1 23 0 221 385 47 61 chr13 69151232 69151593 -50593305 - L2 LINE L2 -1 3271 2916 362 289 152 29 chr13 69151844 69152048 -50592850 - L2 LINE L2 -672 2642 2414 269 311 39 19 chr13 69153127 69153230 -50591668 + L2 LINE L2 33 137 -3177 294 258 183 0 chr13 69153503 69153596 -50591302 + MIR SINE MIR 38 147 -115 1424 186 3 62 chr13 69153610 69153901 -50590997 + AluJb SINE Alu 2 275 -37 958 48 80 0 chr13 69153919 69154044 -50590854 - MER85 DNA T2_type -4 135 1 318 365 103 29 chr13 69154066 69154512 -50590386 - LTR33 LTR ERVL -20 501 23 21 0 0 0 chr13 69155383 69155404 -50589494 + AT_rich Low_complexity Low_complexity 1 21 0 396 354 81 58 chr13 69155501 69156142 -50588756 - L2 LINE L2 -1132 2182 1527 205 291 35 58 chr13 69156830 69156916 -50587982 + L3 LINE CR1 1492 1575 -2 21 57 0 0 chr13 69157801 69157836 -50587062 + AT_rich Low_complexity Low_complexity 1 35 0 49 71 0 0 chr13 69158046 69158144 -50586754 + AT_rich Low_complexity Low_complexity 1 98 0 2509 206 35 0 chr13 69158147 69158638 -50586260 - MER6A DNA MER2_type -97 508 1 788 221 0 13 chr13 69159526 69159684 -50585214 - LTR32 LTR ERVL 0 471 316 1561 212 28 6 chr13 69159779 69160105 -50584793 - LTR32 LTR ERVL -124 347 15 4813 192 23 25 chr13 69161573 69161897 -50583001 + L1MA4A LINE L1 4325 4648 -1655 2097 133 0 7 chr13 69161897 69162206 -50582692 + AluSc SINE Alu 3 309 0 4813 192 23 25 chr13 69162206 69163796 -50581102 + L1MA4A LINE L1 4648 6297 -6 41 36 0 0 chr13 69164845 69164900 -50579998 + AT_rich Low_complexity Low_complexity 1 55 0 1370 173 98 7 chr13 69165131 69165408 -50579490 + MER47A DNA MER2_type 65 366 0 383 314 111 26 chr13 69165598 69165824 -50579074 - MIR SINE MIR -15 247 3 751 301 103 58 chr13 69166429 69167374 -50577524 + L1ME3A LINE L1 222 1123 -5440 1960 94 64 27 chr13 69167374 69167672 -50577226 + AluSc SINE Alu 1 309 0 751 301 103 58 chr13 69167672 69167752 -50577146 + L1ME3A LINE L1 1123 1198 -5365 1894 204 33 19 chr13 69167752 69168178 -50576720 - MSTB1 LTR MaLR 0 432 1 751 301 103 58 chr13 69168178 69168229 -50576669 + L1ME3A LINE L1 1198 1348 -5215 1472 256 60 23 chr13 69168280 69168717 -50576181 - MLT1C LTR MaLR -12 455 3 410 241 94 68 chr13 69168730 69168921 -50575977 + L1ME3A LINE L1 1266 1461 -4923 369 309 116 53 chr13 69168945 69169246 -50575652 + L1ME3A LINE L1 1696 2015 -4548 2838 229 36 54 chr13 69169468 69170957 -50573941 + L1MB5 LINE L1 4691 6164 -10 1423 221 83 42 chr13 69171085 69171494 -50573404 + L1MC2 LINE L1 5814 6245 -99 423 0 0 0 chr13 69171494 69171541 -50573357 + (TG)n Simple_repeat Simple_repeat 2 48 0 1423 221 83 42 chr13 69171541 69171589 -50573309 + L1MC2 LINE L1 6245 6290 -54 337 295 83 56 chr13 69172259 69172547 -50572351 + L1ME3A LINE L1 5174 5469 -913 1985 267 40 37 chr13 69172580 69173480 -50571418 + L1ME3A LINE L1 5504 6406 0 2498 46 0 16 chr13 69173579 69173883 -50571015 - AluY SINE Alu -12 299 1 261 262 131 9 chr13 69174443 69174657 -50570241 - Charlie2a DNA MER1_type -540 2322 2083 1658 181 7 13 chr13 69174966 69175275 -50569623 + AluSx SINE Alu 1 307 -5 801 273 116 48 chr13 69175285 69175975 -50568923 - Charlie2a DNA MER1_type -942 1920 1184 216 235 0 0 chr13 69175975 69176043 -50568855 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 1960 181 21 14 chr13 69176490 69176911 -50567987 + L1MA7 LINE L1 5866 6289 -2 762 126 8 39 chr13 69176977 69177104 -50567794 - MER1B DNA MER1_type 0 339 217 579 236 0 0 chr13 69177105 69177215 -50567683 - MER1B DNA MER1_type -187 110 1 400 176 0 35 chr13 69177826 69177911 -50566987 + L1MA5 LINE L1 6202 6283 -17 315 49 0 0 chr13 69178720 69178761 -50566137 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr13 69178850 69178871 -50566027 + AT_rich Low_complexity Low_complexity 1 21 0 2007 194 171 125 chr13 69179124 69180099 -50564799 + LTR28 LTR ERV1 1 1020 0 4313 163 47 18 chr13 69180365 69180447 -50564451 - L1PB4 LINE L1 -2 6154 6076 201 39 0 0 chr13 69180447 69180473 -50564425 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4313 163 47 18 chr13 69180473 69181260 -50563638 - L1PB4 LINE L1 -80 6076 5260 246 274 24 0 chr13 69181299 69181383 -50563515 + (TA)n Simple_repeat Simple_repeat 1 86 0 310 303 91 0 chr13 69182161 69182260 -50562638 + MER5B DNA MER1_type 1 108 -70 229 291 32 89 chr13 69182322 69182480 -50562418 - MIR SINE MIR -108 154 6 2433 120 19 6 chr13 69183149 69183508 -50561390 + THE1B LTR MaLR 1 364 0 10772 105 2 36 chr13 69183508 69183876 -50561022 + THE1B-int LTR MaLR 1 380 -1200 2044 121 23 10 chr13 69183876 69184183 -50560715 - AluSp SINE Alu -2 311 1 10772 105 2 36 chr13 69184183 69185449 -50559449 + THE1B-int LTR MaLR 380 1580 0 2342 139 17 6 chr13 69185449 69185809 -50559089 + THE1B LTR MaLR 1 364 0 265 332 79 45 chr13 69186203 69186405 -50558493 - MIR SINE MIR -41 221 13 23 0 0 0 chr13 69187138 69187161 -50557737 + AT_rich Low_complexity Low_complexity 1 23 0 34 24 0 0 chr13 69187487 69187528 -50557370 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr13 69188942 69188974 -50555924 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr13 69189053 69189079 -50555819 + AT_rich Low_complexity Low_complexity 1 26 0 735 304 113 13 chr13 69189711 69190102 -50554796 + LTR16A LTR ERVL 21 450 0 432 328 46 24 chr13 69190131 69190449 -50554449 + L2 LINE L2 2900 3313 0 25 31 0 0 chr13 69190481 69190513 -50554385 + AT_rich Low_complexity Low_complexity 1 32 0 937 250 22 4 chr13 69190627 69190855 -50554043 - L1PA16 LINE L1 -24 6142 5911 22 56 0 0 chr13 69191174 69191210 -50553688 + AT_rich Low_complexity Low_complexity 1 36 0 247 313 27 27 chr13 69192645 69192757 -50552141 + MIR SINE MIR 5 116 -146 1340 145 81 87 chr13 69193307 69193617 -50551281 - AluSx SINE Alu -4 308 1 29 78 0 0 chr13 69194191 69194255 -50550643 + AT_rich Low_complexity Low_complexity 1 64 0 189 0 0 0 chr13 69194277 69194298 -50550600 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2882 161 26 5 chr13 69195004 69195777 -50549121 + L1PA16 LINE L1 5010 5797 -369 * 3659 101 29 5 chr13 69195764 69196317 -50548581 + L1PA7 LINE L1 1687 2252 -3894 2557 187 27 23 chr13 69196321 69196921 -50547977 + pTR5 LTR ERV1 743 1344 -1094 4794 93 131 0 chr13 69196937 69197664 -50547234 + LTR12 LTR ERV1 5 826 0 20875 102 7 0 chr13 69197670 69198249 -50546649 + L1PA7 LINE L1 2259 2833 -3321 1879 117 50 3 chr13 69198249 69198531 -50546367 + AluSc SINE Alu 3 297 -12 20875 102 7 0 chr13 69198531 69201847 -50543051 + L1PA7 LINE L1 2833 6154 0 2017 174 11 8 chr13 69201851 69202214 -50542684 + L1PA16 LINE L1 5780 6143 -23 27 0 0 0 chr13 69202731 69202758 -50542140 + AT_rich Low_complexity Low_complexity 1 27 0 1293 229 56 79 chr13 69203288 69203835 -50541063 - L1MD3 LINE L1 -8 7987 7452 880 248 34 82 chr13 69203835 69204214 -50540684 + MLT1A1 LTR MaLR 1 361 -4 1293 229 56 79 chr13 69204214 69204235 -50540663 - L1MD3 LINE L1 -543 7452 7432 290 196 10 134 chr13 69204273 69204370 -50540528 - MLT1F1 LTR MaLR -451 116 32 370 213 53 11 chr13 69204416 69204510 -50540388 - L1MD3 LINE L1 -693 7302 7205 204 40 0 0 chr13 69204512 69204537 -50540361 + (TAG)n Simple_repeat Simple_repeat 2 26 0 267 31 0 0 chr13 69204924 69204956 -50539942 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1464 220 28 70 chr13 69205024 69205455 -50539443 + MER76 LTR ERV 10 422 -266 307 211 183 58 chr13 69205529 69205633 -50539265 + MER76 LTR ERV 410 526 -162 * 4209 134 96 50 chr13 69205632 69206547 -50538351 - Tigger3b DNA MER2_type -262 969 13 579 320 35 47 chr13 69206557 69206901 -50537997 - L1MD3 LINE L1 -1164 6831 6492 24 0 0 0 chr13 69207200 69207224 -50537674 + AT_rich Low_complexity Low_complexity 1 24 0 2161 103 6 6 chr13 69207311 69207622 -50537276 + AluY SINE Alu 1 311 0 258 224 37 0 chr13 69208362 69208443 -50536455 + L1MCc LINE L1 1370 1618 -4979 311 267 107 40 chr13 69208443 69208593 -50536305 + L1MCc LINE L1 2747 2906 -4216 22 94 0 0 chr13 69208672 69208736 -50536162 + AT_rich Low_complexity Low_complexity 1 64 0 26 50 0 0 chr13 69209348 69209388 -50535510 + AT_rich Low_complexity Low_complexity 1 40 0 228 143 0 0 chr13 69209815 69209857 -50535041 + (TG)n Simple_repeat Simple_repeat 1 42 0 42 65 0 0 chr13 69210668 69210745 -50534153 + AT_rich Low_complexity Low_complexity 1 77 0 297 113 75 38 chr13 69212114 69212220 -50532678 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 25 31 0 0 chr13 69212333 69212365 -50532533 + AT_rich Low_complexity Low_complexity 1 32 0 3024 161 20 61 chr13 69213012 69213715 -50531183 + L1MA8 LINE L1 5618 6291 0 272 285 34 37 chr13 69215581 69215800 -50529098 + L1ME LINE L1 64 591 -5939 571 270 47 67 chr13 69216365 69216706 -50528192 + L1ME LINE L1 927 1260 -5283 1438 137 24 0 chr13 69216733 69216981 -50527917 + L1MA8 LINE L1 6008 6261 -30 279 250 13 13 chr13 69216981 69217057 -50527841 + (TATG)n Simple_repeat Simple_repeat 2 77 0 1288 248 83 62 chr13 69217449 69217814 -50527084 + L1M4 LINE L1 5135 5505 -669 1677 184 11 0 chr13 69217814 69218096 -50526802 - AluJb SINE Alu -26 286 2 1288 248 83 62 chr13 69218096 69218398 -50526500 + L1M4 LINE L1 5505 5799 -375 264 229 29 14 chr13 69218389 69218459 -50526439 + L1M4 LINE L1 4876 4946 -1200 * 457 198 11 0 chr13 69218743 69218834 -50526064 + FRAM/FAM SINE Alu 1 88 -88 226 351 147 27 chr13 69218866 69219125 -50525773 - L2 LINE L2 -1783 1531 1242 185 364 76 61 chr13 69219424 69219556 -50525342 + L2 LINE L2 3139 3272 0 554 178 41 15 chr13 69219572 69219699 -50525199 - L1MA10 LINE L1 -44 6122 6001 231 61 0 0 chr13 69219710 69219743 -50525155 + (TG)n Simple_repeat Simple_repeat 2 34 0 1049 182 33 18 chr13 69219752 69220030 -50524868 - MLT2A2 LTR ERVL 0 453 267 * 2592 166 12 5 chr13 69220021 69220745 -50524153 + MER6 DNA MER2_type 90 864 -1 1152 191 43 0 chr13 69220745 69220991 -50523907 - L1MA9 LINE L1 -150 6034 5854 2549 49 0 3 chr13 69221728 69222032 -50522866 + AluY SINE Alu 1 303 -8 29 90 0 0 chr13 69222286 69222364 -50522534 + AT_rich Low_complexity Low_complexity 1 78 0 271 359 29 0 chr13 69222621 69222724 -50522174 - L2 LINE L2 0 3272 3167 317 289 115 0 chr13 69223083 69223187 -50521711 + MER94 DNA DNA 18 133 -1 213 149 21 21 chr13 69223362 69223409 -50521489 + (CA)n Simple_repeat Simple_repeat 2 48 0 579 288 41 22 chr13 69223577 69223844 -50521054 - L1ME LINE L1 -582 5584 5313 373 184 35 0 chr13 69223848 69223935 -50520963 - L1ME LINE L1 -873 5273 5184 251 245 47 57 chr13 69224229 69224335 -50520563 + LTR43 LTR ERV1 187 291 -311 338 372 23 26 chr13 69225542 69225846 -50519052 + MER110-int LTR ERV1 1355 1657 -5019 531 357 62 40 chr13 69226196 69227023 -50517875 + MER110-int LTR ERV1 2024 2868 -3808 1172 317 57 48 chr13 69227629 69228702 -50516196 + MER110-int LTR ERV1 2518 3599 -3523 337 283 68 51 chr13 69228804 69229041 -50515857 + MER110-int LTR ERV1 5920 6160 -2759 1653 167 17 3 chr13 69229508 69229801 -50515097 + AluSx SINE Alu 1 297 -15 617 350 31 25 chr13 69230959 69231510 -50513388 + MER110-int LTR ERV1 5945 6498 -178 279 253 11 11 chr13 69231866 69231953 -50512945 + LTR43 LTR ERV1 189 275 -327 788 236 43 65 chr13 69232181 69232532 -50512366 - L1M4 LINE L1 -1073 5073 4731 251 217 116 0 chr13 69232597 69232666 -50512232 + HERVL40 LTR ERVL 5392 5468 -62 188 296 11 80 chr13 69232941 69233029 -50511869 + L2 LINE L2 3183 3264 -49 262 299 37 45 chr13 69233184 69233318 -50511580 + MIR SINE MIR 92 224 -38 24 32 0 0 chr13 69233675 69233706 -50511192 + AT_rich Low_complexity Low_complexity 1 31 0 367 286 95 8 chr13 69233713 69233839 -50511059 - LTR40a LTR ERVL -382 137 1 246 265 112 10 chr13 69235870 69235968 -50508930 - L2 LINE L2 -1313 2001 1894 275 87 58 0 chr13 69235988 69236057 -50508841 + (TA)n Simple_repeat Simple_repeat 2 74 0 1612 160 11 17 chr13 69236067 69236354 -50508544 - AluJb SINE Alu -27 285 1 1308 253 102 0 chr13 69236660 69237064 -50507834 + MER110 LTR ERV1 1 445 -46 1964 167 93 13 chr13 69237302 69237698 -50507200 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr13 69238124 69238147 -50506751 + AT_rich Low_complexity Low_complexity 1 23 0 261 288 94 56 chr13 69240912 69241072 -50503826 + MLT1D LTR MaLR 3 168 -337 26 0 0 0 chr13 69242522 69242548 -50502350 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr13 69243203 69243235 -50501663 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr13 69243695 69243722 -50501176 + (TG)n Simple_repeat Simple_repeat 2 28 0 233 171 0 0 chr13 69244076 69244117 -50500781 + L1P LINE L1 3715 3755 -2391 266 167 17 0 chr13 69244472 69244532 -50500366 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 36 0 0 chr13 69244613 69244641 -50500257 + AT_rich Low_complexity Low_complexity 1 28 0 353 148 45 0 chr13 69244691 69244779 -50500119 + L1MA8 LINE L1 6190 6281 -10 490 184 60 2 chr13 69244795 69244910 -50499988 - L1MA9 LINE L1 -88 6237 6108 190 376 86 23 chr13 69245914 69246135 -50498763 - L2 LINE L2 -250 3063 2829 426 20 0 0 chr13 69246189 69246240 -50498658 + (CA)n Simple_repeat Simple_repeat 2 52 0 1002 149 11 0 chr13 69246245 69246419 -50498479 + HSMAR2 DNA Mariner 4 179 -1123 5167 145 8 47 chr13 69246424 69247072 -50497826 + HSMAR2 DNA Mariner 399 1001 -301 2049 125 16 48 chr13 69247072 69247447 -50497451 - THE1B LTR MaLR -1 363 1 5167 145 8 47 chr13 69247447 69247735 -50497163 + HSMAR2 DNA Mariner 1001 1299 -3 1511 235 86 5 chr13 69247779 69248196 -50496702 - MLT2B1 LTR ERVL -67 453 3 586 301 132 5 chr13 69249023 69249242 -50495656 + MIR SINE MIR 6 252 -10 222 91 0 0 chr13 69249682 69249715 -50495183 + (TG)n Simple_repeat Simple_repeat 1 33 0 1253 182 76 76 chr13 69250753 69251110 -50493788 + L1MB7 LINE L1 5827 6183 -1 907 168 6 0 chr13 69251153 69251326 -50493572 - L1MA4 LINE L1 -7 6293 6120 1863 173 80 50 chr13 69251481 69251904 -50492994 - MER67D LTR ERV1 -78 436 1 3252 89 17 49 chr13 69252091 69252621 -50492277 + L1MA1 LINE L1 5790 6302 0 2225 49 0 4 chr13 69253286 69253550 -50491348 + AluY SINE Alu 39 301 -10 31 0 0 0 chr13 69254426 69254457 -50490441 + AT_rich Low_complexity Low_complexity 1 31 0 201 196 20 0 chr13 69255179 69255230 -50489668 + (TA)n Simple_repeat Simple_repeat 1 52 0 3890 84 26 32 chr13 69255253 69255837 -50489061 - LTR19B LTR ERV1 0 580 1 21 0 0 0 chr13 69256346 69256367 -50488531 + AT_rich Low_complexity Low_complexity 1 21 0 2257 79 0 30 chr13 69256421 69256726 -50488172 - AluY SINE Alu -15 296 1 22 94 0 0 chr13 69257164 69257228 -50487670 + AT_rich Low_complexity Low_complexity 1 64 0 24 67 0 0 chr13 69257257 69257302 -50487596 + AT_rich Low_complexity Low_complexity 1 45 0 233 293 23 38 chr13 69257415 69257548 -50487350 + L1MEc LINE L1 214 344 -6219 318 200 111 37 chr13 69257600 69257790 -50487108 + L1MEc LINE L1 1153 1356 -5207 225 232 24 12 chr13 69257832 69257914 -50486984 + L1MA10 LINE L1 6248 6330 -4 226 210 16 16 chr13 69258000 69258062 -50486836 + (TA)n Simple_repeat Simple_repeat 2 63 0 361 341 91 6 chr13 69258065 69258413 -50486485 + L1MEc LINE L1 1304 1829 -4734 1097 287 98 34 chr13 69258539 69259884 -50485014 + L1MEc LINE L1 2871 4363 -2019 2714 161 29 65 chr13 69259901 69260516 -50484382 - L1MB1 LINE L1 -158 6010 5418 3673 219 54 22 chr13 69260523 69261232 -50483666 + L1MEc LINE L1 4566 5319 -1063 2172 179 39 2 chr13 69261232 69261639 -50483259 - MSTB LTR MaLR -4 422 1 3673 219 54 22 chr13 69261639 69261945 -50482953 + L1MEc LINE L1 5319 5614 -768 24 32 0 0 chr13 69263413 69263444 -50481454 + AT_rich Low_complexity Low_complexity 1 31 0 6376 77 0 7 chr13 69263524 69264377 -50480521 - L1PA8 LINE L1 -1 6171 5325 33 56 0 0 chr13 69264573 69264627 -50480271 + AT_rich Low_complexity Low_complexity 1 54 0 6334 150 48 15 chr13 69266007 69267185 -50477713 + Tigger3b DNA MER2_type 2 1218 -13 22 0 0 0 chr13 69267494 69267516 -50477382 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr13 69268000 69268041 -50476857 + AT_rich Low_complexity Low_complexity 1 41 0 264 185 0 19 chr13 69269302 69269356 -50475542 - MER20 DNA MER1_type -1 218 166 2078 195 28 3 chr13 69269386 69269775 -50475123 - MER70B LTR ERVL -177 401 3 22 35 0 0 chr13 69270190 69270219 -50474679 + AT_rich Low_complexity Low_complexity 1 29 0 813 180 79 16 chr13 69270564 69270753 -50474145 - MER46A DNA MER2_type -29 207 7 211 214 0 0 chr13 69270924 69270966 -50473932 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 68 0 0 chr13 69271306 69271350 -50473548 + AT_rich Low_complexity Low_complexity 1 44 0 2094 113 14 0 chr13 69272013 69272297 -50472601 + AluSq SINE Alu 3 290 -23 299 194 0 0 chr13 69272699 69272761 -50472137 - L1MB1 LINE L1 -1008 5138 5077 972 212 97 56 chr13 69272761 69273152 -50471746 + L1MA9 LINE L1 5867 6273 -39 2154 155 75 5 chr13 69274460 69274860 -50470038 + MSTA LTR MaLR 1 428 0 2169 173 22 14 chr13 69274861 69275277 -50469621 + MSTA-int LTR MaLR 2 420 -1231 222 211 0 0 chr13 69275280 69275318 -50469580 + (CATA)n Simple_repeat Simple_repeat 3 40 0 21 57 0 0 chr13 69275400 69275435 -50469463 + AT_rich Low_complexity Low_complexity 1 35 0 271 341 84 56 chr13 69275435 69275649 -50469249 + L2 LINE L2 2757 2976 -338 424 308 75 0 chr13 69275757 69275903 -50468995 + HERVL40 LTR ERVL 3005 3161 -2369 304 191 32 0 chr13 69276112 69276175 -50468723 + HERVL40 LTR ERVL 3526 3590 -1940 513 238 95 67 chr13 69276342 69276552 -50468346 + HERVL40 LTR ERVL 3751 3966 -1564 192 40 0 0 chr13 69276612 69276637 -50468261 + (TG)n Simple_repeat Simple_repeat 2 26 0 482 74 74 0 chr13 69276659 69276740 -50468158 - L1PA13 LINE L1 -2 6161 6075 297 306 10 0 chr13 69276948 69277046 -50467852 - HAL1b LINE L1 -556 792 694 2697 194 17 15 chr13 69277549 69277751 -50467147 + L1MB3 LINE L1 5582 5782 -401 2316 117 14 25 chr13 69277751 69278119 -50466779 + THE1B LTR MaLR 1 364 0 2697 194 17 15 chr13 69278119 69278513 -50466385 + L1MB3 LINE L1 5782 6179 -4 26 0 0 0 chr13 69278675 69278701 -50466197 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 69279268 69279290 -50465608 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 69280417 69280446 -50464452 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 69281054 69281076 -50463822 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 69281311 69281334 -50463564 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 69281439 69281467 -50463431 + AT_rich Low_complexity Low_complexity 1 28 0 2218 113 3 0 chr13 69281776 69282086 -50462812 + AluSp SINE Alu 1 311 -2 655 322 114 57 chr13 69282117 69282643 -50462255 + MLT1E LTR MaLR 1 601 -23 271 347 0 0 chr13 69282654 69282749 -50462149 - L2 LINE L2 -1862 1452 1358 24 0 0 0 chr13 69282820 69282844 -50462054 + AT_rich Low_complexity Low_complexity 1 24 0 244 247 14 0 chr13 69282881 69282954 -50461944 + A-rich Low_complexity Low_complexity 4 77 0 23 33 0 0 chr13 69283586 69283616 -50461282 + AT_rich Low_complexity Low_complexity 1 30 0 287 276 9 0 chr13 69283706 69283811 -50461087 + L1M4 LINE L1 2515 2620 -3526 413 312 119 32 chr13 69283887 69284140 -50460758 + L1M4 LINE L1 3106 3380 -2766 684 273 84 18 chr13 69284141 69284522 -50460376 + L1M4 LINE L1 4354 4759 -1387 308 365 104 40 chr13 69284689 69284892 -50460006 - L1MEc LINE L1 -5920 476 288 1337 131 40 5 chr13 69284892 69285114 -50459784 + MER30 DNA MER1_type 1 230 0 308 365 104 40 chr13 69285114 69285313 -50459585 - L1MEc LINE L1 -6108 288 48 1937 124 46 0 chr13 69285675 69285981 -50458917 - L1PA14 LINE L1 -13 6148 5829 2007 75 52 0 chr13 69286231 69286498 -50458400 - AluY SINE Alu -30 281 1 396 288 98 39 chr13 69287279 69287857 -50457041 + L1MEc LINE L1 2134 2711 -3504 701 322 129 8 chr13 69287873 69288587 -50456311 + L1MEc LINE L1 3505 4304 -1911 36 0 0 0 chr13 69288954 69288990 -50455908 + AT_rich Low_complexity Low_complexity 1 36 0 10791 153 39 93 chr13 69289078 69291060 -50453838 + L1PA7 LINE L1 12 1820 -4326 1974 128 0 0 chr13 69291060 69291357 -50453541 + AluSc SINE Alu 6 302 0 10791 153 39 93 chr13 69291357 69291971 -50452927 + L1PA7 LINE L1 1820 2466 -3680 236 62 42 62 chr13 69291971 69292067 -50452831 + (TA)n Simple_repeat Simple_repeat 1 94 0 19318 101 10 0 chr13 69292072 69295801 -50449097 + L1PA7 LINE L1 2445 6141 -13 425 174 0 43 chr13 69296027 69296119 -50448779 + MLT1A2 LTR MaLR 1 88 -286 706 220 25 19 chr13 69296312 69296471 -50448427 + MLT1A2 LTR MaLR 215 374 0 2793 171 171 22 chr13 69297334 69298030 -50446868 + L1MC2 LINE L1 5520 6319 -25 26 50 0 0 chr13 69298330 69298370 -50446528 + AT_rich Low_complexity Low_complexity 1 40 0 348 83 0 0 chr13 69299165 69299213 -50445685 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr13 69301566 69301589 -50443309 + AT_rich Low_complexity Low_complexity 1 23 0 2397 196 33 13 chr13 69302402 69302919 -50441979 - LTR27 LTR ERV1 -11 493 3 1113 126 0 9 chr13 69303598 69303867 -50441031 + AluSx SINE Alu 1 310 0 2422 142 36 10 chr13 69304416 69304833 -50440065 - MSTC LTR MaLR 0 428 1 24 32 0 0 chr13 69305222 69305253 -50439645 + AT_rich Low_complexity Low_complexity 1 31 0 1388 203 52 0 chr13 69305396 69305667 -50439231 - AluJo SINE Alu -22 290 6 338 296 74 12 chr13 69306124 69306286 -50438612 + MLT1L LTR MaLR 438 609 -6 1178 246 113 28 chr13 69307049 69307472 -50437426 + MER74B LTR ERVL 71 529 -93 647 258 77 48 chr13 69307588 69308027 -50436871 + L1ME LINE L1 1276 1618 -4924 25 0 0 0 chr13 69308149 69308174 -50436724 + AT_rich Low_complexity Low_complexity 1 25 0 1983 138 3 0 chr13 69308358 69308656 -50436242 - AluSx SINE Alu -13 299 1 29 28 0 0 chr13 69309074 69309110 -50435788 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr13 69309316 69309336 -50435562 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr13 69309812 69309841 -50435057 + AT_rich Low_complexity Low_complexity 1 29 0 26 93 0 0 chr13 69309932 69310007 -50434891 + AT_rich Low_complexity Low_complexity 1 75 0 325 109 91 0 chr13 69311259 69311314 -50433584 - L1 LINE L1 -1220 4926 4867 294 29 0 0 chr13 69311894 69311929 -50432969 + (CA)n Simple_repeat Simple_repeat 2 36 0 28 61 0 0 chr13 69312683 69312732 -50432166 + AT_rich Low_complexity Low_complexity 1 49 0 187 327 209 0 chr13 69313364 69313474 -50431424 + L2 LINE L2 3180 3312 -1 204 421 43 0 chr13 69313517 69313681 -50431217 - L2 LINE L2 -1380 1934 1764 2136 64 14 4 chr13 69313706 69313986 -50430912 + AluSc SINE Alu 1 283 -26 260 26 0 26 chr13 69313986 69314024 -50430874 + (TTAAA)n Simple_repeat Simple_repeat 3 39 0 1189 312 71 73 chr13 69315684 69316616 -50428282 - L2 LINE L2 -1333 1981 1052 353 240 51 63 chr13 69316648 69316823 -50428075 - L2 LINE L2 -2519 795 623 258 81 0 0 chr13 69317051 69317088 -50427810 + (T)n Simple_repeat Simple_repeat 1 37 0 288 364 19 56 chr13 69317304 69317573 -50427325 - L1MDa LINE L1 -6224 316 58 22 0 0 0 chr13 69317806 69317828 -50427070 + AT_rich Low_complexity Low_complexity 1 22 0 212 79 53 0 chr13 69319280 69319318 -50425580 + A-rich Low_complexity Low_complexity 5 44 0 27 49 0 0 chr13 69319706 69319747 -50425151 + AT_rich Low_complexity Low_complexity 1 41 0 565 242 26 13 chr13 69320897 69321050 -50423848 + MER97c DNA MER1_type? 32 186 -904 26 0 0 0 chr13 69321104 69321130 -50423768 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr13 69322183 69322227 -50422671 + AT_rich Low_complexity Low_complexity 1 44 0 2972 172 56 12 chr13 69322228 69322874 -50422024 - L1MA4 LINE L1 -2 6298 5625 875 81 0 0 chr13 69322889 69323000 -50421898 + AluY SINE Alu 1 111 -200 5937 153 40 11 chr13 69323105 69324152 -50420746 + Tigger1 DNA MER2_type 1 1078 -1340 441 254 70 0 chr13 69324153 69324267 -50420631 + FLAM_A SINE Alu 4 125 -17 2814 154 26 0 chr13 69324280 69324747 -50420151 + Tigger1 DNA MER2_type 1062 1540 -878 409 152 0 87 chr13 69324728 69324820 -50420078 + Tigger1 DNA MER2_type 2321 2404 -14 * 23 0 0 0 chr13 69324864 69324887 -50420011 + AT_rich Low_complexity Low_complexity 1 23 0 1445 209 14 0 chr13 69325650 69325933 -50418965 + Tigger7 DNA MER2_type 215 501 -1986 3270 163 30 66 chr13 69325986 69326696 -50418202 + L1MA6 LINE L1 5612 6295 -5 26 30 0 0 chr13 69326699 69326732 -50418166 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr13 69328005 69328031 -50416867 + AT_rich Low_complexity Low_complexity 1 26 0 2450 125 13 13 chr13 69328037 69328412 -50416486 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr13 69328700 69328728 -50416170 + AT_rich Low_complexity Low_complexity 1 28 0 1345 214 68 0 chr13 69329492 69329597 -50415301 + AluJo SINE Alu 12 108 -204 270 81 0 0 chr13 69329597 69329634 -50415264 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1345 214 68 0 chr13 69329634 69329809 -50415089 + AluJo SINE Alu 108 311 -1 23 0 0 0 chr13 69330724 69330747 -50414151 + AT_rich Low_complexity Low_complexity 1 23 0 2236 33 37 0 chr13 69331180 69331452 -50413446 + AluY SINE Alu 30 311 0 209 267 121 78 chr13 69331769 69331975 -50412923 + L2 LINE L2 3098 3312 -1 681 137 0 8 chr13 69332745 69332862 -50412036 + L1PA13 LINE L1 6044 6159 -4 754 163 20 0 chr13 69334287 69334440 -50410458 - L1MB2 LINE L1 0 6171 6016 28 0 0 0 chr13 69334869 69334897 -50410001 + AT_rich Low_complexity Low_complexity 1 28 0 261 191 13 13 chr13 69335545 69335638 -50409260 + L1MA7 LINE L1 6208 6291 0 352 325 38 42 chr13 69335744 69335956 -50408942 + MIR SINE MIR 52 262 0 1306 171 116 8 chr13 69337170 69337428 -50407470 - MLT1B LTR MaLR -13 377 92 22 35 0 0 chr13 69337693 69337722 -50407176 + AT_rich Low_complexity Low_complexity 1 29 0 367 329 87 19 chr13 69338389 69338550 -50406348 + MIR SINE MIR 15 186 -76 389 380 47 19 chr13 69338646 69338859 -50406039 + L2 LINE L2 3051 3269 -3 1689 177 40 50 chr13 69339416 69339812 -50405086 - L1MC1 LINE L1 0 6333 5942 1444 171 52 35 chr13 69339890 69340177 -50404721 - AluSx SINE Alu -20 292 1 1819 95 47 0 chr13 69340205 69340479 -50404419 - L1MA1 LINE L1 0 6302 6016 324 60 40 0 chr13 69340496 69340546 -50404352 - MER4-int LTR ERV1 -1802 4796 4745 * 6439 111 51 18 chr13 69340542 69341640 -50403258 + MER4-int LTR ERV1 4073 5206 -1392 925 217 130 74 chr13 69341681 69341725 -50403173 - L1ME1 LINE L1 -197 5969 5929 495 0 0 0 chr13 69341725 69341780 -50403118 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 1837 128 11 4 chr13 69341786 69342060 -50402838 - AluSx SINE Alu -36 276 1 925 217 130 74 chr13 69342060 69342469 -50402429 - L1ME1 LINE L1 -241 5925 5483 591 292 35 9 chr13 69342604 69342874 -50402024 - L1MDa LINE L1 -1909 4631 4355 1366 256 169 38 chr13 69342882 69344121 -50400777 - L1MDa LINE L1 -2260 4280 2879 312 239 102 11 chr13 69344126 69344214 -50400684 + Tigger6 DNA MER2_type 2 97 -1500 300 298 80 68 chr13 69344252 69344588 -50400310 - L1MDa LINE L1 -4931 1609 1270 295 29 0 0 chr13 69345941 69345975 -50398923 + U2 snRNA snRNA 1 34 -154 197 364 39 23 chr13 69346102 69346231 -50398667 - MER5A DNA MER1_type 0 189 59 277 309 57 24 chr13 69347646 69347769 -50397129 - MER5B DNA MER1_type -5 173 47 247 253 253 0 chr13 69347987 69348070 -50396828 + MIR SINE MIR 38 141 -67 565 87 33 0 chr13 69349277 69349369 -50395529 + C-rich Low_complexity Low_complexity 4 98 0 2550 88 36 6 chr13 69349720 69350084 -50394814 + THE1C LTR MaLR 1 375 0 31 68 0 0 chr13 69351049 69351108 -50393790 + AT_rich Low_complexity Low_complexity 1 59 0 302 294 73 107 chr13 69351520 69351792 -50393106 + L1M4 LINE L1 497 759 -5783 489 17 0 0 chr13 69351921 69351979 -50392919 + (CA)n Simple_repeat Simple_repeat 2 59 0 379 285 41 69 chr13 69351992 69352238 -50392660 + L1M4 LINE L1 902 1140 -5406 645 274 59 39 chr13 69352408 69352882 -50392016 + L1M4 LINE L1 1366 1850 -4796 * 1490 276 44 38 chr13 69352877 69353005 -50391893 + L1M4 LINE L1 2646 2772 -3872 2144 136 0 0 chr13 69353005 69353313 -50391585 + AluSx SINE Alu 1 308 -4 1490 276 44 38 chr13 69353313 69353844 -50391054 + L1M4 LINE L1 2772 3309 -3335 906 150 18 0 chr13 69353851 69354018 -50390880 - Tigger7 DNA MER2_type -55 2432 2263 348 24 0 0 chr13 69354019 69354060 -50390838 + (TC)n Simple_repeat Simple_repeat 2 42 0 1505 191 8 17 chr13 69354073 69354758 -50390140 + L1MA8 LINE L1 5554 6291 0 430 239 91 11 chr13 69354761 69355025 -50389873 + L1M4 LINE L1 3571 3855 -2789 21 95 0 0 chr13 69355053 69355116 -50389782 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr13 69355494 69355515 -50389383 + AT_rich Low_complexity Low_complexity 1 21 0 863 84 8 8 chr13 69356514 69356645 -50388253 - L1MA1 LINE L1 -6 6296 6166 23 33 0 0 chr13 69356858 69356888 -50388010 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr13 69357242 69357273 -50387625 + AT_rich Low_complexity Low_complexity 1 31 0 1368 214 54 91 chr13 69357978 69358460 -50386438 - MER101 LTR ERV1 0 474 11 273 305 12 0 chr13 69358545 69358627 -50386271 - MER94 DNA DNA -51 83 1 4092 102 17 0 chr13 69358634 69359224 -50385674 - MER4A LTR ERV1 0 600 1 22 35 0 0 chr13 69360446 69360475 -50384423 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 69361623 69361653 -50383245 + AT_rich Low_complexity Low_complexity 1 30 0 271 306 59 12 chr13 69363026 69363111 -50381787 - L2 LINE L2 -27 3245 3157 342 0 0 0 chr13 69363772 69363810 -50381088 + (TG)n Simple_repeat Simple_repeat 1 38 0 373 194 0 2 chr13 69363825 69363901 -50380997 - L1ME LINE L1 -526 5636 5562 1822 272 66 56 chr13 69364240 69366277 -50378621 - L1ME1 LINE L1 -17 6409 4356 1071 244 90 38 chr13 69366274 69366350 -50378548 - L1ME1 LINE L1 -2738 3668 3597 * 1333 211 93 11 chr13 69366350 69366630 -50378268 - 7SLRNA srpRNA srpRNA -15 305 3 1071 244 90 38 chr13 69366630 69367086 -50377812 - L1ME1 LINE L1 -2809 3597 3108 567 273 126 39 chr13 69367111 69367814 -50377084 - L1ME1 LINE L1 -4912 1494 776 2318 88 3 0 chr13 69368412 69368707 -50376191 - AluSp SINE Alu -17 296 1 31 68 0 0 chr13 69369394 69369453 -50375445 + AT_rich Low_complexity Low_complexity 1 59 0 226 167 17 33 chr13 69370086 69370146 -50374752 - LTR33A LTR ERVL -19 504 446 1082 150 6 0 chr13 69370614 69370781 -50374117 - MLT1C LTR MaLR 0 467 300 489 322 67 19 chr13 69371017 69371225 -50373673 - ERVL LTR ERVL -1533 4231 4014 28 79 0 0 chr13 69371602 69371665 -50373233 + AT_rich Low_complexity Low_complexity 1 63 0 359 73 18 0 chr13 69371696 69371751 -50373147 + (TA)n Simple_repeat Simple_repeat 2 57 0 2084 24 16 0 chr13 69371789 69372036 -50372862 - L1PA4 LINE L1 -4 6151 5901 562 167 0 18 chr13 69372082 69372196 -50372702 - L1PA15 LINE L1 -5 6160 6049 24 0 0 0 chr13 69373257 69373281 -50371617 + AT_rich Low_complexity Low_complexity 1 24 0 1804 286 95 31 chr13 69373466 69374438 -50370460 + L1MA9 LINE L1 311 1246 -4719 * 7175 216 87 14 chr13 69374435 69375923 -50368975 + L1MA9 LINE L1 2978 4356 -1844 2759 16 0 0 chr13 69375923 69376230 -50368668 - AluYb8 SINE Alu -11 307 1 7175 216 87 14 chr13 69376230 69377732 -50367166 + L1MA9 LINE L1 4356 6198 -2 5546 103 4 11 chr13 69378451 69379266 -50365632 - L1PA13 LINE L1 -4 6159 5351 24 32 0 0 chr13 69380410 69380441 -50364457 + AT_rich Low_complexity Low_complexity 1 31 0 444 383 25 0 chr13 69380610 69380850 -50364048 + MIR SINE MIR 17 262 0 1313 146 61 13 chr13 69380961 69381381 -50363517 + MER61D LTR ERV1 1 501 0 631 257 49 4 chr13 69382534 69382779 -50362119 + L1M3a LINE L1 2195 2450 -3584 225 311 0 0 chr13 69382813 69382874 -50362024 + (CATA)n Simple_repeat Simple_repeat 3 63 0 871 341 152 32 chr13 69383299 69384056 -50360842 + L2 LINE L2 2203 3116 -197 3682 190 7 74 chr13 69384056 69384771 -50360127 - MER54B LTR ERVL -3 790 139 2116 110 7 3 chr13 69384771 69385063 -50359835 + AluSx SINE Alu 3 295 -17 3682 190 7 74 chr13 69385063 69385194 -50359704 - MER54B LTR ERVL -654 139 1 871 341 152 32 chr13 69385194 69385419 -50359479 + L2 LINE L2 3116 3313 0 2489 169 68 8 chr13 69385937 69386410 -50358488 + MER67D LTR ERV1 1 501 -13 1400 268 30 56 chr13 69388331 69388834 -50356064 + MLT1C-int LTR MaLR 882 1371 0 642 176 25 63 chr13 69388834 69388993 -50355905 + MLT1C LTR MaLR 1 153 -314 508 363 44 18 chr13 69388993 69389428 -50355470 - L1M4 LINE L1 -1211 4935 4490 562 291 67 39 chr13 69390232 69390517 -50354381 - MLT1J LTR MaLR -172 339 47 449 262 34 80 chr13 69390766 69391003 -50353895 - L1MC5 LINE L1 -598 7363 7138 5591 165 57 48 chr13 69391004 69391643 -50353255 + Tigger3b DNA MER2_type 2 634 -2394 3919 95 11 2 chr13 69391643 69392190 -50352708 + MER41A LTR ERV1 1 552 -2 5591 165 57 48 chr13 69392190 69392240 -50352658 + Tigger3b DNA MER2_type 634 682 -2346 642 195 16 8 chr13 69392240 69392368 -50352530 + FLAM_A SINE Alu 2 130 -3 5591 165 57 48 chr13 69392368 69392896 -50352002 + Tigger3b DNA MER2_type 682 1231 0 210 197 0 86 chr13 69393136 69393253 -50351645 + T-rich Low_complexity Low_complexity 6 112 0 677 310 54 84 chr13 69393441 69394314 -50350584 - L1M4 LINE L1 -1549 4597 3751 620 297 58 50 chr13 69394315 69395175 -50349723 - L1ME LINE L1 -4674 1406 542 267 318 102 60 chr13 69395337 69395739 -50349159 - L1ME LINE L1 -5589 481 63 32 26 0 0 chr13 69395856 69395895 -50349003 + AT_rich Low_complexity Low_complexity 1 39 0 2294 76 0 19 chr13 69396038 69396355 -50348543 - AluY SINE Alu 0 311 1 1708 108 8 8 chr13 69396508 69396757 -50348141 - AluSg SINE Alu -18 292 44 285 148 37 0 chr13 69397035 69397116 -50347782 + (TA)n Simple_repeat Simple_repeat 2 85 0 700 210 30 24 chr13 69397247 69397414 -50347484 + MLT2B1 LTR ERVL 1 168 -352 414 195 0 0 chr13 69397414 69397501 -50347397 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 223 152 40 111 chr13 69397832 69397931 -50346967 + T-rich Low_complexity Low_complexity 1 92 0 3153 113 42 2 chr13 69404405 69404899 -50339999 + L1PA11 LINE L1 5661 6174 0 223 286 92 31 chr13 69405325 69405423 -50339475 + MIR SINE MIR 54 157 -105 332 213 56 19 chr13 69406015 69406175 -50338723 + (TA)n Simple_repeat Simple_repeat 2 167 0 272 207 195 0 chr13 69406287 69406369 -50338529 + L2 LINE L2 3174 3271 -42 22 56 0 0 chr13 69406512 69406548 -50338350 + AT_rich Low_complexity Low_complexity 1 36 0 4109 206 32 49 chr13 69406835 69408269 -50336629 - L1MC2 LINE L1 -9 6335 4919 2219 284 61 26 chr13 69408254 69409292 -50335606 - L1MC2 LINE L1 -2057 4089 3016 * 499 281 71 52 chr13 69409604 69410028 -50334870 + HAL1 LINE L1 1230 1661 -846 342 283 71 9 chr13 69411061 69411174 -50333724 + MIR SINE MIR 49 168 -94 1818 98 8 12 chr13 69411348 69411602 -50333296 - AluSc SINE Alu -21 288 36 1122 230 27 46 chr13 69414297 69414676 -50330222 + MER67C LTR ERV1 5 402 -236 256 212 15 15 chr13 69414741 69414807 -50330091 + MER67D LTR ERV1 449 514 0 22 70 0 0 chr13 69416129 69416172 -50328726 + AT_rich Low_complexity Low_complexity 1 43 0 322 312 76 70 chr13 69416276 69416619 -50328279 + L1M4 LINE L1 4487 4831 -1315 267 229 16 0 chr13 69416770 69416831 -50328067 + L1MA3 LINE L1 6171 6232 -73 689 172 8 0 chr13 69416832 69416966 -50327932 + L1MA3 LINE L1 6171 6305 0 606 351 61 0 chr13 69417013 69417244 -50327654 - MIR SINE MIR 0 262 18 23 33 0 0 chr13 69418907 69418937 -50325961 + AT_rich Low_complexity Low_complexity 1 30 0 241 325 56 30 chr13 69419941 69420138 -50324760 - MIR SINE MIR -13 249 48 201 39 0 0 chr13 69420710 69420736 -50324162 + (A)n Simple_repeat Simple_repeat 1 26 0 277 115 0 0 chr13 69421256 69421308 -50323590 + L1PA14 LINE L1 6110 6161 0 23 78 0 0 chr13 69421485 69421536 -50323362 + AT_rich Low_complexity Low_complexity 1 51 0 365 248 171 29 chr13 69421604 69421814 -50323084 - HAL1b LINE L1 -186 1162 923 1923 170 36 33 chr13 69422010 69422399 -50322499 + MLT1B LTR MaLR 1 390 0 299 329 108 12 chr13 69423325 69423527 -50321371 - MIR SINE MIR -29 233 16 337 327 103 69 chr13 69423536 69424029 -50320869 - L2 LINE L2 0 3313 2804 418 292 80 44 chr13 69424233 69424572 -50320326 - L1MC5 LINE L1 -159 7802 7452 6597 75 11 2 chr13 69425383 69426641 -50318257 + L1PA7 LINE L1 4937 6154 0 181 114 0 45 chr13 69427060 69427104 -50317794 + (TTA)n Simple_repeat Simple_repeat 2 43 0 961 205 77 100 chr13 69427790 69428219 -50316679 - L1ME3A LINE L1 -3 6167 5749 22 35 0 0 chr13 69428239 69428268 -50316630 + AT_rich Low_complexity Low_complexity 1 29 0 1429 249 42 31 chr13 69429295 69429753 -50315145 - MLT1C LTR MaLR -2 465 3 442 152 20 40 chr13 69429777 69429876 -50315022 - MLT1C-int LTR MaLR -40 1331 1235 601 340 21 0 chr13 69430449 69430690 -50314208 - MIR SINE MIR -15 247 2 1708 178 3 28 chr13 69430829 69431269 -50313629 + AluJb SINE Alu 1 432 0 198 271 57 82 chr13 69431271 69431393 -50313505 + L2 LINE L2 3195 3313 0 734 244 60 20 chr13 69431548 69431749 -50313149 + MER58A DNA MER1_type 4 212 -12 417 291 0 9 chr13 69432353 69432463 -50312435 + MLT1F LTR MaLR 36 144 -398 301 320 24 63 chr13 69434579 69434832 -50310066 + MLT1K LTR MaLR 344 586 -2 1704 159 20 48 chr13 69435830 69436182 -50308716 - L1MA7 LINE L1 -276 6015 5674 902 150 103 9 chr13 69436182 69436395 -50308503 + L1MA8 LINE L1 6055 6287 -4 2490 52 0 0 chr13 69436638 69436944 -50307954 - AluY SINE Alu -5 306 1 4708 189 30 20 chr13 69436981 69438017 -50306881 + L1MA7 LINE L1 4737 5761 -530 552 56 0 0 chr13 69438017 69438089 -50306809 + (CA)n Simple_repeat Simple_repeat 1 72 0 4708 189 30 20 chr13 69438089 69438385 -50306513 + L1MA7 LINE L1 5761 6094 -197 2040 143 0 6 chr13 69438385 69438699 -50306199 + AluSx SINE Alu 1 312 0 4708 189 30 20 chr13 69438699 69438900 -50305998 + L1MA7 LINE L1 6094 6291 0 234 192 0 0 chr13 69439504 69439556 -50305342 + GA-rich Low_complexity Low_complexity 2 53 0 432 139 0 0 chr13 69440124 69440203 -50304695 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 355 283 141 33 chr13 69441331 69441515 -50303383 + L2 LINE L2 3106 3309 -4 227 256 13 26 chr13 69441833 69441911 -50302987 + CT-rich Low_complexity Low_complexity 3 79 0 24 0 0 0 chr13 69441953 69441977 -50302921 + AT_rich Low_complexity Low_complexity 1 24 0 2638 104 0 0 chr13 69442963 69443318 -50301580 + THE1A LTR MaLR 1 355 0 919 221 38 23 chr13 69443476 69443739 -50301159 - L1MA9 LINE L1 -38 6274 6008 21 0 0 0 chr13 69444076 69444097 -50300801 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 69444671 69444707 -50300191 + AT_rich Low_complexity Low_complexity 1 36 0 259 302 62 0 chr13 69445023 69445119 -50299779 + MER63 DNA MER1_type 960 1061 -1 2209 66 3 0 chr13 69445243 69445532 -50299366 + L1PA5 LINE L1 5861 6150 -4 40 59 0 0 chr13 69446126 69446194 -50298704 + AT_rich Low_complexity Low_complexity 1 68 0 257 225 0 12 chr13 69446610 69446690 -50298208 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 23 33 0 0 chr13 69447566 69447596 -50297302 + AT_rich Low_complexity Low_complexity 1 30 0 1684 288 77 13 chr13 69447841 69448608 -50296290 - L1MEc LINE L1 -5264 1132 317 30 27 0 0 chr13 69448699 69448736 -50296162 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 69448847 69448870 -50296028 + AT_rich Low_complexity Low_complexity 1 23 0 417 236 125 67 chr13 69450156 69450364 -50294534 + L1ME2 LINE L1 5935 6154 -10 6603 178 19 9 chr13 69450825 69452916 -50291982 + L1PA13 LINE L1 4068 6144 -19 2321 81 7 7 chr13 69453350 69453659 -50291239 + AluSp SINE Alu 1 309 -4 8052 223 53 32 chr13 69453665 69456832 -50288066 - L1MC1 LINE L1 -18 6595 3496 376 283 76 68 chr13 69456832 69457228 -50287670 + MER93a LTR ERV1 1 399 -3 8052 223 53 32 chr13 69457228 69457361 -50287537 - L1MC1 LINE L1 -3117 3496 3367 1911 194 50 17 chr13 69457361 69457778 -50287120 + MSTB1 LTR MaLR 1 431 -1 8052 223 53 32 chr13 69457778 69458769 -50286129 - L1MC1 LINE L1 -3246 3367 2214 2169 106 20 0 chr13 69459257 69459550 -50285348 - AluSg SINE Alu -11 299 1 208 351 83 60 chr13 69459641 69459906 -50284992 + L2 LINE L2 3005 3275 -38 1669 225 0 64 chr13 69460130 69460535 -50284363 + MLT1B LTR MaLR 4 382 -8 1306 233 26 4 chr13 69460868 69461139 -50283759 + AluJb SINE Alu 1 277 -35 243 309 0 0 chr13 69462446 69462501 -50282397 + MIR SINE MIR 42 96 -112 13862 123 12 62 chr13 69462522 69468885 -50276013 - L1PA7 LINE L1 0 6154 12 23 33 0 0 chr13 69469652 69469682 -50275216 + AT_rich Low_complexity Low_complexity 1 30 0 213 368 36 42 chr13 69469980 69470173 -50274725 + L2 LINE L2 1491 1682 -1632 382 256 11 51 chr13 69470444 69470620 -50274278 - L1MEc LINE L1 -1482 4733 4565 364 294 198 16 chr13 69470648 69471215 -50273683 - L1MEc LINE L1 -1739 4476 3807 780 274 116 24 chr13 69471250 69471663 -50273235 - LTR40c LTR ERVL -7 458 8 489 248 19 12 chr13 69471684 69471845 -50273053 - L1MEc LINE L1 -2437 3778 3617 480 275 66 75 chr13 69471952 69472711 -50272187 - L1MEc LINE L1 -3275 2940 2189 283 125 28 0 chr13 69472816 69472888 -50272010 + (TA)n Simple_repeat Simple_repeat 1 74 0 2199 119 0 0 chr13 69472888 69473191 -50271707 - AluSx SINE Alu -9 303 1 930 234 100 14 chr13 69473225 69473515 -50271383 - L1MA9 LINE L1 -38 6274 5960 426 316 103 35 chr13 69473521 69473869 -50271029 - L1MEc LINE L1 -4152 2063 1692 232 267 22 0 chr13 69473979 69474069 -50270829 - L1MDa LINE L1 -5920 610 519 282 255 32 48 chr13 69474220 69474408 -50270490 - L1MEc LINE L1 -4824 1572 1388 1862 197 61 19 chr13 69474622 69475033 -50269865 + MSTA LTR MaLR 1 428 0 22 88 0 0 chr13 69475366 69475423 -50269475 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr13 69475468 69475489 -50269409 + AT_rich Low_complexity Low_complexity 1 21 0 667 140 98 0 chr13 69475683 69475826 -50269072 + L1MA8 LINE L1 6134 6290 -1 1743 108 93 19 chr13 69475879 69476148 -50268750 + AluSp SINE Alu 1 289 -24 23 54 0 0 chr13 69476148 69476185 -50268713 + AT_rich Low_complexity Low_complexity 1 37 0 317 240 32 8 chr13 69476360 69476485 -50268413 + (TA)n Simple_repeat Simple_repeat 1 128 0 29 60 0 0 chr13 69477006 69477056 -50267842 + AT_rich Low_complexity Low_complexity 1 50 0 325 336 63 56 chr13 69477190 69477476 -50267422 - L2 LINE L2 -4 3309 3022 28 29 0 0 chr13 69478035 69478070 -50266828 + AT_rich Low_complexity Low_complexity 1 35 0 364 261 118 26 chr13 69478262 69478415 -50266483 - MLT1J2 LTR MaLR -15 435 269 261 302 129 29 chr13 69478472 69478611 -50266287 - MLT1J2 LTR MaLR -297 153 1 424 331 173 16 chr13 69478675 69478998 -50265900 - MLT2F LTR ERVL -59 604 231 22 0 0 0 chr13 69479022 69479044 -50265854 + AT_rich Low_complexity Low_complexity 1 22 0 815 40 0 0 chr13 69480414 69480513 -50264385 - L1PA5 LINE L1 -6 6148 6050 641 348 29 4 chr13 69480600 69480876 -50264022 - MLT1J2 LTR MaLR -167 283 1 2549 46 0 3 chr13 69481656 69481961 -50262937 + AluY SINE Alu 1 304 -7 24 32 0 0 chr13 69482556 69482587 -50262311 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 69483025 69483051 -50261847 + AT_rich Low_complexity Low_complexity 1 26 0 901 280 91 55 chr13 69483376 69483740 -50261158 - MLT1D LTR MaLR -128 377 1 249 139 0 0 chr13 69483956 69483999 -50260899 + (CATA)n Simple_repeat Simple_repeat 4 46 0 22 80 0 0 chr13 69485221 69485271 -50259627 + AT_rich Low_complexity Low_complexity 1 50 0 1855 205 112 37 chr13 69485539 69486086 -50258812 + LTR18B LTR ERVL 4 591 -23 21 0 0 0 chr13 69487244 69487265 -50257633 + AT_rich Low_complexity Low_complexity 1 21 0 697 237 0 26 chr13 69487378 69487534 -50257364 - FRAM SINE Alu -19 157 6 22 88 0 0 chr13 69488391 69488448 -50256450 + AT_rich Low_complexity Low_complexity 1 57 0 1728 273 69 22 chr13 69488860 69489103 -50255795 - MLT1E2 LTR MaLR 0 626 396 2873 144 84 2 chr13 69489103 69489590 -50255308 - MER1A DNA MER1_type 0 527 1 1728 273 69 22 chr13 69489590 69489944 -50254954 - MLT1E2 LTR MaLR -230 396 1 3146 115 17 36 chr13 69489999 69490519 -50254379 + MER75 DNA T2_type 1 510 -4 483 18 0 0 chr13 69490572 69490628 -50254270 + (TG)n Simple_repeat Simple_repeat 1 56 0 4405 159 69 7 chr13 69491290 69492113 -50252785 + L1PB4 LINE L1 5271 6144 -12 513 275 52 52 chr13 69492999 69493290 -50251608 + L1MCc LINE L1 103 393 -6030 262 139 0 0 chr13 69493444 69493487 -50251411 + HSMAR1 DNA Mariner 1245 1287 0 981 290 93 44 chr13 69493578 69494264 -50250634 + L1MCc LINE L1 814 1533 -4890 917 265 166 11 chr13 69494355 69494831 -50250067 - L1M4 LINE L1 -2989 3157 2608 180 0 0 0 chr13 69494865 69494885 -50250013 + (TC)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 69495193 69495217 -50249681 + AT_rich Low_complexity Low_complexity 1 24 0 4141 236 36 16 chr13 69495698 69497805 -50247093 - L1MB4 LINE L1 -2 6178 4025 7100 178 4 1 chr13 69498587 69499906 -50244992 + L1PA13 LINE L1 4029 5350 -796 197 83 28 0 chr13 69499911 69499947 -50244951 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2624 83 2 74 chr13 69500003 69500435 -50244463 - L1PA8A LINE L1 -3 6128 5728 5375 121 7 2 chr13 69500436 69501255 -50243643 + L1PA13 LINE L1 5338 6160 -3 186 208 0 0 chr13 69501289 69501337 -50243561 + T-rich Low_complexity Low_complexity 1 48 0 743 220 16 0 chr13 69501380 69501566 -50243332 + MER63 DNA MER1_type 1 189 -872 761 163 0 0 chr13 69501687 69501828 -50243070 + AluJb SINE Alu 1 141 -171 395 191 13 108 chr13 69501874 69502031 -50242867 + L1M4 LINE L1 4600 4741 -1405 4687 174 22 23 chr13 69502060 69502357 -50242541 - L1PA13 LINE L1 -45 6118 5822 2361 133 11 3 chr13 69502357 69502718 -50242180 + THE1B LTR MaLR 1 364 0 9394 114 48 31 chr13 69502718 69504272 -50240626 + THE1B-int LTR MaLR 1 1580 0 2225 138 14 8 chr13 69504272 69504634 -50240264 + THE1B LTR MaLR 1 364 0 4687 174 22 23 chr13 69504634 69505671 -50239227 - L1PA13 LINE L1 -338 5825 4780 718 249 27 11 chr13 69505672 69505857 -50239041 + L1M4 LINE L1 4020 4207 -1939 979 245 34 4 chr13 69505872 69506141 -50238757 + MER63 DNA MER1_type 653 929 -131 21 57 0 0 chr13 69509196 69509231 -50235667 + AT_rich Low_complexity Low_complexity 1 35 0 207 216 20 0 chr13 69509392 69509436 -50235462 + (TA)n Simple_repeat Simple_repeat 2 49 -4 937 198 0 0 chr13 69509436 69509598 -50235300 - FAM SINE Alu -13 162 1 207 216 20 0 chr13 69509598 69509604 -50235294 + (TA)n Simple_repeat Simple_repeat 49 53 0 23 33 0 0 chr13 69510563 69510593 -50234305 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr13 69510841 69510890 -50234008 + AT_rich Low_complexity Low_complexity 1 49 0 485 259 42 47 chr13 69510978 69511168 -50233730 - L1MC/D LINE L1 -2319 5489 5299 2035 107 53 13 chr13 69511168 69511468 -50233430 + AluSx SINE Alu 1 312 0 485 259 42 47 chr13 69511468 69511513 -50233385 - L1MC/D LINE L1 -2509 5299 5255 3642 210 41 25 chr13 69511908 69513311 -50231587 - L1PB4 LINE L1 -3 6153 4728 * 5065 219 37 54 chr13 69513310 69514898 -50230000 + L1 LINE L1 2511 4071 -2075 22 0 0 0 chr13 69515245 69515267 -50229631 + AT_rich Low_complexity Low_complexity 1 22 0 395 244 0 0 chr13 69516280 69516362 -50228536 - L1MC/D LINE L1 -575 5769 5688 270 143 0 0 chr13 69516420 69516476 -50228422 + L1MC4 LINE L1 6648 6703 -1339 371 67 0 33 chr13 69516481 69516541 -50228357 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1797 152 82 20 chr13 69516653 69516996 -50227902 + THE1B LTR MaLR 1 364 0 1763 179 129 5 chr13 69517249 69517630 -50227268 + MSTA LTR MaLR 1 428 0 8413 150 24 39 chr13 69517632 69519233 -50225665 + MSTA-int LTR MaLR 3 1579 -1 1747 192 119 8 chr13 69519234 69519619 -50225279 + MSTA LTR MaLR 1 428 0 2467 187 45 26 chr13 69519678 69520251 -50224647 + LTR60 LTR ERV1 1 584 -2 294 29 0 0 chr13 69520668 69520703 -50224195 + (CA)n Simple_repeat Simple_repeat 2 36 0 32 0 0 0 chr13 69522425 69522457 -50222441 + AT_rich Low_complexity Low_complexity 1 32 0 206 333 12 12 chr13 69523899 69523980 -50220918 + L2 LINE L2 1982 2062 -1252 550 52 0 0 chr13 69524317 69524394 -50220504 - L1PA3 LINE L1 0 6155 6079 457 68 41 0 chr13 69524478 69524551 -50220347 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 271 274 97 26 chr13 69525276 69525389 -50219509 - MER5C DNA MER1_type -202 122 2 2026 131 7 10 chr13 69525407 69525713 -50219185 - AluSx SINE Alu -7 305 1 1479 244 81 44 chr13 69526563 69527068 -50217830 - MER68 LTR ERV1 -38 524 1 1226 290 78 10 chr13 69527581 69528091 -50216807 + ERVL-F LTR ERVL 4953 5497 -267 22 0 0 0 chr13 69528240 69528262 -50216636 + AT_rich Low_complexity Low_complexity 1 22 0 2719 185 35 12 chr13 69528262 69528448 -50216450 + Tigger7 DNA MER2_type 2 182 -551 2164 120 0 19 chr13 69528448 69528765 -50216133 - AluSq SINE Alu -2 311 1 2719 185 35 12 chr13 69528765 69529086 -50215812 + Tigger7 DNA MER2_type 182 521 -212 574 167 22 0 chr13 69529085 69529175 -50215723 + Tigger7 DNA MER2_type 2396 2487 0 * 456 344 86 58 chr13 69529297 69529783 -50215115 + MLT2F LTR ERVL 1 500 -163 396 303 31 53 chr13 69529856 69530024 -50214874 + MIR SINE MIR 47 211 -51 21 0 0 0 chr13 69530366 69530387 -50214511 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 69532099 69532120 -50212778 + AT_rich Low_complexity Low_complexity 1 21 0 214 327 27 64 chr13 69532393 69532503 -50212395 - MIR SINE MIR -69 139 34 969 204 53 19 chr13 69532603 69532868 -50212030 - L1MA4A LINE L1 -1 7004 6731 396 82 123 27 chr13 69532868 69532941 -50211957 + THE1C LTR MaLR 1 80 -295 12670 213 32 11 chr13 69532943 69536322 -50208576 - L1MA4A LINE L1 -613 6392 2944 2012 264 15 2 chr13 69536437 69536914 -50207984 - L1MA4A LINE L1 -6363 486 4 373 370 104 27 chr13 69537169 69538129 -50206769 + L1M2 LINE L1 27 1320 -5889 309 269 26 0 chr13 69538181 69538259 -50206639 + L1PBb LINE L1 1856 1935 -5273 * 692 257 54 43 chr13 69538235 69538515 -50206383 + L1PBb LINE L1 1696 1978 -5231 3612 60 4 2 chr13 69538542 69539010 -50205888 + L1PA7 LINE L1 5682 6150 -4 1569 257 45 10 chr13 69539013 69539522 -50205376 + L1 LINE L1 2181 2707 -3439 254 148 66 0 chr13 69539548 69539609 -50205289 + (CTATA)n Simple_repeat Simple_repeat 1 65 0 2304 242 41 89 chr13 69539638 69539781 -50205117 + L1 LINE L1 2562 2710 -3436 1702 124 49 4 chr13 69539781 69540048 -50204850 - AluSx SINE Alu -13 299 21 2304 242 41 89 chr13 69540048 69540975 -50203923 + L1 LINE L1 2710 3581 -2565 233 146 0 0 chr13 69540989 69541030 -50203868 + LTR66 LTR ERVL 398 438 -172 197 122 49 0 chr13 69541047 69541088 -50203810 + (CATA)n Simple_repeat Simple_repeat 2 44 0 25 65 0 0 chr13 69541171 69541217 -50203681 + AT_rich Low_complexity Low_complexity 1 46 0 601 303 11 11 chr13 69542470 69542658 -50202240 + MLT1I LTR MaLR 26 213 -196 840 168 0 0 chr13 69543489 69543632 -50201266 + FLAM_C SINE Alu 1 143 0 1111 128 28 28 chr13 69543822 69544040 -50200858 - L1MA4 LINE L1 -4 6296 6079 22 21 0 62 chr13 69544809 69544857 -50200041 + AT_rich Low_complexity Low_complexity 1 45 0 1575 266 20 36 chr13 69545164 69545664 -50199234 - MLT1D LTR MaLR -13 492 1 226 279 9 36 chr13 69546714 69546825 -50198073 - L1MEd LINE L1 -4911 1208 1101 505 320 154 17 chr13 69546854 69547296 -50197602 + MLT1G LTR MaLR 40 523 -67 2129 93 7 3 chr13 69549219 69549529 -50195369 - AluY SINE Alu 0 311 1 1950 100 0 0 chr13 69549621 69549890 -50195008 + AluY SINE Alu 43 311 0 393 314 94 20 chr13 69549909 69550365 -50194533 + L1MEc LINE L1 1334 1823 -4573 309 304 140 31 chr13 69550392 69550741 -50194157 + L1MEc LINE L1 1874 2260 -4136 214 421 45 42 chr13 69551123 69551477 -50193421 - L2 LINE L2 -22 3250 2896 23 54 0 0 chr13 69552050 69552087 -50192811 + AT_rich Low_complexity Low_complexity 1 37 0 696 273 125 26 chr13 69552900 69553541 -50191357 - L1M4 LINE L1 -2337 3809 3106 916 254 54 45 chr13 69553565 69554049 -50190849 - L1M4 LINE L1 -3114 3032 2545 569 215 80 37 chr13 69554415 69554578 -50190320 + MER3 DNA MER1_type 28 197 -12 21 57 0 0 chr13 69555219 69555254 -50189644 + AT_rich Low_complexity Low_complexity 1 35 0 250 255 32 0 chr13 69555512 69555606 -50189292 + MER69 DNA AcHobo 2416 2512 -14 36 23 0 0 chr13 69556069 69556112 -50188786 + AT_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr13 69557178 69557209 -50187689 + AT_rich Low_complexity Low_complexity 1 31 0 2204 104 0 3 chr13 69557232 69557529 -50187369 - AluSg SINE Alu -14 296 1 865 238 52 52 chr13 69557602 69557892 -50187006 - MER54A LTR ERVL -3 898 609 845 202 6 0 chr13 69558018 69558186 -50186712 - MER54A LTR ERVL -732 169 1 1467 239 138 17 chr13 69558262 69558726 -50186172 + MLT2B1 LTR ERVL 1 520 0 1551 192 35 114 chr13 69561144 69561748 -50183150 - LTR10A LTR ERV1 -42 567 12 11438 155 32 40 chr13 69561757 69565477 -50179421 - Harlequin LTR ERV1 -2 6647 1218 2420 119 15 36 chr13 69565471 69565952 -50178946 - HERVI LTR ERV1 -5559 1337 703 * 653 145 43 8 chr13 69565952 69566069 -50178829 - HERVI LTR ERV1 -5198 2587 2467 4150 84 50 2 chr13 69566089 69566669 -50178229 - LTR14B LTR ERVK 0 608 1 2620 174 27 9 chr13 69566672 69567219 -50177679 - L1M2 LINE L1 -481 5810 5254 22 35 0 0 chr13 69567438 69567467 -50177431 + AT_rich Low_complexity Low_complexity 1 29 0 195 417 15 8 chr13 69567526 69567658 -50177240 + MER5A DNA MER1_type 56 188 -1 1602 199 42 156 chr13 69567828 69568611 -50176287 + LTR8A LTR ERV1 34 727 0 544 211 68 49 chr13 69569383 69569761 -50175137 - L1MDa LINE L1 -3892 2648 2377 332 285 43 91 chr13 69570258 69570633 -50174265 - L1MDa LINE L1 -6168 372 16 305 335 96 6 chr13 69570644 69570811 -50174087 - L1MEc LINE L1 -4534 1862 1681 2976 110 60 54 chr13 69570815 69571350 -50173548 + LTR10A LTR ERV1 8 545 -64 548 284 121 45 chr13 69571375 69572436 -50172462 - L1MEc LINE L1 -4709 1687 547 22 0 0 0 chr13 69572483 69572505 -50172393 + AT_rich Low_complexity Low_complexity 1 22 0 406 291 75 55 chr13 69573025 69573279 -50171619 - L1ME1 LINE L1 -108 6058 5800 1877 179 8 23 chr13 69573308 69573660 -50171238 + MER7A DNA MER2_type 2 346 0 460 270 22 11 chr13 69573661 69573846 -50171052 - L1ME1 LINE L1 -1197 4949 4763 * 691 288 46 20 chr13 69573844 69574150 -50170748 - L1ME1 LINE L1 -1729 4417 4104 423 318 23 41 chr13 69574156 69574376 -50170522 - L1M4 LINE L1 -1779 4367 4152 5003 180 22 66 chr13 69574389 69576688 -50168210 - L1MA3 LINE L1 0 6305 4120 2158 166 43 17 chr13 69576688 69577105 -50167793 + MSTA LTR MaLR 1 428 0 514 167 33 0 chr13 69577147 69577237 -50167661 + MSTA-int LTR MaLR 864 956 -695 7804 181 28 3 chr13 69577281 69578669 -50166229 + MSTA-int LTR MaLR 33 1455 -196 278 278 0 22 chr13 69579132 69579222 -50165676 + (TATG)n Simple_repeat Simple_repeat 2 89 0 1129 139 0 5 chr13 69580309 69580496 -50164402 + MSTA-int LTR MaLR 1450 1635 -16 2337 154 47 2 chr13 69580513 69580921 -50163977 + MSTA LTR MaLR 3 428 0 6409 213 50 55 chr13 69580921 69581193 -50163705 - L1MA3 LINE L1 -2022 4124 3852 2114 179 33 17 chr13 69581193 69581612 -50163286 - MSTB LTR MaLR 0 426 1 6409 213 50 55 chr13 69581612 69583298 -50161600 - L1MA3 LINE L1 -2294 3852 2176 3798 164 29 74 chr13 69583323 69583435 -50161463 - L1PB4 LINE L1 -32 6124 6009 2332 87 7 7 chr13 69583435 69583745 -50161153 - AluY SINE Alu -1 310 1 3798 164 29 74 chr13 69583745 69583982 -50160916 - L1PB4 LINE L1 -147 6009 5763 1074 144 0 0 chr13 69583982 69584162 -50160736 + (TA)n Simple_repeat Simple_repeat 1 180 0 3798 164 29 74 chr13 69584162 69584786 -50160112 - L1PB4 LINE L1 -393 5763 5199 3208 29 0 0 chr13 69585350 69585729 -50159169 + L1PA3 LINE L1 5777 6155 0 21 36 0 0 chr13 69586249 69586277 -50158621 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr13 69586388 69586411 -50158487 + (A)n Simple_repeat Simple_repeat 1 23 0 1049 128 6 17 chr13 69586609 69586789 -50158109 + THE1C-int LTR MaLR 1403 1580 0 2121 150 33 8 chr13 69586789 69587155 -50157743 + THE1C LTR MaLR 1 375 0 192 333 81 24 chr13 69587165 69587288 -50157610 - L2 LINE L2 -348 2965 2836 746 301 106 45 chr13 69587384 69588052 -50156846 + L1ME LINE L1 245 953 -5117 21 0 0 0 chr13 69688764 69688785 -50056113 + AT_rich Low_complexity Low_complexity 1 21 0 358 303 169 45 chr13 69689036 69689508 -50055390 - L1M4 LINE L1 -5295 1560 1030 228 221 53 80 chr13 69689791 69689904 -50054994 - L1M4 LINE L1 -6626 233 124 294 29 0 0 chr13 69690258 69690293 -50054605 + (TAA)n Simple_repeat Simple_repeat 3 37 0 598 245 0 25 chr13 69690653 69690812 -50054086 - MER96B DNA MER1_type? -261 156 2 23 0 0 0 chr13 69690992 69691015 -50053883 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr13 69691041 69691076 -50053822 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr13 69691281 69691319 -50053579 + AT_rich Low_complexity Low_complexity 1 38 0 443 266 79 57 chr13 69691496 69691812 -50053086 - HAL1 LINE L1 -707 1800 1478 880 138 0 13 chr13 69692085 69692237 -50052661 - L1MA5 LINE L1 0 6300 6151 1425 189 24 20 chr13 69692237 69692533 -50052365 + L1MA5 LINE L1 5715 6011 -289 216 302 12 12 chr13 69693882 69693968 -50050930 + GA-rich Low_complexity Low_complexity 3 88 0 23 68 0 0 chr13 69694688 69694732 -50050166 + AT_rich Low_complexity Low_complexity 1 44 0 1854 200 63 22 chr13 69697088 69697503 -50047395 + Tigger2a DNA MER2_type 1 432 -2 1323 165 112 104 chr13 69698279 69698386 -50046512 - MER47A DNA MER2_type -1963 360 255 2154 40 0 0 chr13 69698386 69698637 -50046261 - AluY SINE Alu -17 294 44 1323 165 112 104 chr13 69698637 69698886 -50046012 - MER47A DNA MER2_type -2068 255 1 1549 197 25 66 chr13 69699564 69699971 -50044927 - MLT1B LTR MaLR 0 390 1 24 53 0 0 chr13 69701252 69701290 -50043608 + AT_rich Low_complexity Low_complexity 1 38 0 465 341 62 16 chr13 69701592 69701850 -50043048 + L1MEc LINE L1 78 347 -6049 922 261 62 45 chr13 69702682 69702818 -50042080 + L1MEc LINE L1 1687 1819 -4577 1259 289 68 37 chr13 69702818 69703390 -50041508 + MLT1E LTR MaLR 1 590 -3 922 261 62 45 chr13 69703390 69703850 -50041048 + L1MEc LINE L1 1819 2293 -4103 418 269 77 34 chr13 69703982 69704216 -50040682 + L1MEc LINE L1 2984 3227 -2988 1608 285 70 45 chr13 69704274 69705593 -50039305 + L1MEc LINE L1 3353 4703 -1512 322 276 11 0 chr13 69706817 69706904 -50037994 + L1MC4 LINE L1 6616 6703 -1339 314 322 0 0 chr13 69706850 69706940 -50037958 - L1MC4 LINE L1 -1339 6703 6614 * 300 304 0 22 chr13 69706946 69707038 -50037860 - L1MC4 LINE L1 -1339 6703 6614 * 302 333 0 0 chr13 69706996 69707086 -50037812 + L1MC4 LINE L1 6614 6703 -1339 380 149 27 0 chr13 69707087 69707161 -50037737 + (TATATG)n Simple_repeat Simple_repeat 1 76 0 186 150 0 0 chr13 69707509 69707549 -50037349 + (CA)n Simple_repeat Simple_repeat 2 41 0 19215 189 23 14 chr13 69707650 69711292 -50033606 + ERVL LTR ERVL 1855 5529 -235 1181 193 33 24 chr13 69711297 69711602 -50033296 - MER47B DNA MER2_type -9 409 2 1225 180 9 5 chr13 69711603 69711820 -50033078 + ERVL LTR ERVL 5527 5744 -20 1294 250 51 0 chr13 69711914 69712206 -50032692 + MLT2B2 LTR ERVL 209 515 0 21 57 0 0 chr13 69712241 69712276 -50032622 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 69712768 69712790 -50032108 + AT_rich Low_complexity Low_complexity 1 22 0 1266 324 136 7 chr13 69713746 69714446 -50030452 + MER69 DNA AcHobo 281 1070 -1456 312 27 0 0 chr13 69714451 69714488 -50030410 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 71 0 0 chr13 69714495 69714551 -50030347 + AT_rich Low_complexity Low_complexity 1 56 0 434 217 118 7 chr13 69714614 69714766 -50030132 + MER69 DNA AcHobo 2351 2519 -7 29 0 0 0 chr13 69715152 69715181 -50029717 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr13 69715417 69715470 -50029428 + AT_rich Low_complexity Low_complexity 1 53 0 556 156 96 57 chr13 69716413 69716592 -50028306 - L1MA9 LINE L1 -1 6290 6082 343 96 0 19 chr13 69716589 69716641 -50028257 + L1M3 LINE L1 5699 5749 -419 * 26 50 0 0 chr13 69716684 69716724 -50028174 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr13 69717242 69717266 -50027632 + AT_rich Low_complexity Low_complexity 1 24 0 1133 267 44 31 chr13 69717475 69717861 -50027037 + MLT1D LTR MaLR 115 505 0 733 336 43 11 chr13 69718200 69718583 -50026315 + L1M2 LINE L1 3 435 -6403 369 417 67 6 chr13 69718725 69718905 -50025993 + L1M2 LINE L1 756 946 -5903 10685 242 26 26 chr13 69719650 69721232 -50023666 + L1PA16 LINE L1 768 2348 -3875 1970 149 17 0 chr13 69721232 69721528 -50023370 + AluSq SINE Alu 1 301 -12 10685 242 26 26 chr13 69721528 69721612 -50023286 + L1PA16 LINE L1 2348 2430 -3793 210 37 0 0 chr13 69721612 69721639 -50023259 + (CAA)n Simple_repeat Simple_repeat 2 28 0 10685 242 26 26 chr13 69721639 69722242 -50022656 + L1PA16 LINE L1 2430 3031 -3192 2499 56 0 3 chr13 69722242 69722544 -50022354 + AluY SINE Alu 1 301 -10 10685 242 26 26 chr13 69722544 69725707 -50019191 + L1PA16 LINE L1 3031 6219 -4 582 313 64 26 chr13 69725773 69726150 -50018748 + L1MC/D LINE L1 5254 5644 -2164 26 50 0 0 chr13 69726152 69726192 -50018706 + AT_rich Low_complexity Low_complexity 1 40 0 1416 264 21 10 chr13 69726335 69726721 -50018177 - MLT1C LTR MaLR 0 467 78 2485 215 4 2 chr13 69726730 69727199 -50017699 + ERVL LTR ERVL 4007 4476 -1288 1790 154 33 14 chr13 69727207 69727545 -50017353 - MLT2A2 LTR ERVL -144 309 1 9749 122 22 4 chr13 69727545 69728989 -50015909 - HERVL-A2 LTR ERVL 0 5654 4185 * 16520 63 16 13 chr13 69728966 69731885 -50013013 - HERV17 LTR ERV1 -5317 1579 1 5660 69 20 35 chr13 69731885 69732677 -50012221 - LTR17 LTR ERV1 0 780 1 1134 102 0 0 chr13 69732677 69732834 -50012064 - HERVL LTR ERVL -5052 602 446 * 1240 278 47 3 chr13 69732829 69733330 -50011568 + ERVL LTR ERVL 4470 5007 -757 237 264 0 0 chr13 69733929 69734001 -50010897 + (TA)n Simple_repeat Simple_repeat 1 72 0 40 0 0 0 chr13 69734073 69734113 -50010785 + AT_rich Low_complexity Low_complexity 1 40 0 253 215 25 13 chr13 69734702 69734781 -50010117 + (TA)n Simple_repeat Simple_repeat 1 80 0 39 60 0 0 chr13 69735072 69735139 -50009759 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chr13 69735209 69735239 -50009659 + AT_rich Low_complexity Low_complexity 1 30 0 234 264 42 0 chr13 69737363 69737435 -50007463 + CT-rich Low_complexity Low_complexity 2 76 0 378 74 0 0 chr13 69737442 69737496 -50007402 + (CA)n Simple_repeat Simple_repeat 1 54 0 280 340 86 34 chr13 69737751 69737960 -50006938 + L2 LINE L2 3075 3294 -19 27 92 0 0 chr13 69737986 69738062 -50006836 + AT_rich Low_complexity Low_complexity 1 76 0 802 353 33 8 chr13 69738734 69739131 -50005767 + L1PA16 LINE L1 8 414 -7167 10896 236 48 21 chr13 69739693 69744569 -50000329 + L1PA16 LINE L1 2593 7595 -9 22 70 0 0 chr13 69744569 69744612 -50000286 + AT_rich Low_complexity Low_complexity 1 43 0 325 271 165 0 chr13 69745398 69745531 -49999367 - MIR SINE MIR -69 193 39 22 56 0 0 chr13 69746296 69746332 -49998566 + AT_rich Low_complexity Low_complexity 1 36 0 1619 108 5 0 chr13 69746883 69747106 -49997792 - AluSp SINE Alu -10 303 80 21 0 0 0 chr13 69747167 69747188 -49997710 + AT_rich Low_complexity Low_complexity 1 21 0 2901 80 8 0 chr13 69747545 69747935 -49996963 - L1PA8 LINE L1 -11 6161 5769 1164 92 0 0 chr13 69747935 69748088 -49996810 - AluY SINE Alu -20 291 139 4041 64 24 2 chr13 69748088 69748990 -49995908 - L1PA8 LINE L1 -385 5787 4866 351 121 0 0 chr13 69749020 69749078 -49995820 + (TCCCC)n Simple_repeat Simple_repeat 4 61 0 468 0 0 0 chr13 69749444 69749496 -49995402 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 27 49 0 0 chr13 69749645 69749686 -49995212 + AT_rich Low_complexity Low_complexity 1 41 0 203 152 0 0 chr13 69750088 69750121 -49994777 + CT-rich Low_complexity Low_complexity 1 33 0 1206 213 91 27 chr13 69750169 69750544 -49994354 + L1 LINE L1 3873 4271 -1875 293 176 14 0 chr13 69750548 69750622 -49994276 + (TA)n Simple_repeat Simple_repeat 1 75 0 297 333 73 50 chr13 69752208 69752511 -49992387 - LTR16C LTR ERVL -23 468 159 503 239 0 17 chr13 69752719 69752836 -49992062 + MLT1A1 LTR MaLR 4 118 -247 55 56 0 0 chr13 69753082 69753172 -49991726 + AT_rich Low_complexity Low_complexity 1 90 0 21 0 0 0 chr13 69753209 69753230 -49991668 + AT_rich Low_complexity Low_complexity 1 21 0 1115 270 39 85 chr13 69755205 69755745 -49989153 - MLT1E LTR MaLR -2 591 77 586 343 19 24 chr13 69756055 69756265 -49988633 + LTR33 LTR ERVL 1 209 -312 3488 49 0 7 chr13 69756783 69757234 -49987664 + LTR7 LTR ERV1 1 448 -2 411 75 0 0 chr13 69757407 69757460 -49987438 - LTR7 LTR ERV1 -2 448 396 568 128 0 105 chr13 69757480 69757613 -49987285 - LTR7 LTR ERV1 -331 119 1 280 302 60 47 chr13 69758089 69758238 -49986660 + MLT1J2 LTR MaLR 267 417 -33 339 312 117 73 chr13 69759765 69760212 -49984686 - L2 LINE L2 -267 3046 2548 371 68 17 0 chr13 69760225 69760284 -49984614 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 195 42 0 0 chr13 69760285 69760309 -49984589 + (GA)n Simple_repeat Simple_repeat 1 24 0 311 218 0 0 chr13 69760342 69760397 -49984501 - AluJ/monomer SINE Alu -248 55 1 26 50 0 0 chr13 69762203 69762243 -49982655 + AT_rich Low_complexity Low_complexity 1 40 0 482 289 121 39 chr13 69762649 69763061 -49981837 - L1M4 LINE L1 -2921 3225 2780 276 30 0 0 chr13 69763487 69763520 -49981378 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 352 21 35 chr13 69764163 69764305 -49980593 - MIR3 SINE MIR -4 204 65 31 58 0 0 chr13 69764836 69764888 -49980010 + AT_rich Low_complexity Low_complexity 1 52 0 27 87 0 0 chr13 69765223 69765292 -49979606 + AT_rich Low_complexity Low_complexity 1 69 0 28 0 0 0 chr13 69765406 69765434 -49979464 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 69766963 69766995 -49977903 + AT_rich Low_complexity Low_complexity 1 32 0 1365 193 9 44 chr13 69767012 69767328 -49977570 - AluJb SINE Alu -7 305 1 237 178 0 0 chr13 69767702 69767747 -49977151 + (CATA)n Simple_repeat Simple_repeat 4 48 0 556 354 156 45 chr13 69768397 69769228 -49975670 + L2 LINE L2 121 1089 -2225 1973 133 7 3 chr13 69769228 69769522 -49975376 + AluSx SINE Alu 1 295 -17 556 354 156 45 chr13 69769522 69769719 -49975179 + L2 LINE L2 1089 1263 -2051 1314 154 13 17 chr13 69770452 69770686 -49974212 + MER1B DNA MER1_type 1 233 -64 1646 128 18 2 chr13 69770686 69771001 -49973897 - MER51B LTR ERV1 0 377 1 531 165 92 0 chr13 69771001 69771103 -49973795 + MER1B DNA MER1_type 228 339 0 22 56 0 0 chr13 69771301 69771337 -49973561 + AT_rich Low_complexity Low_complexity 1 36 0 186 314 54 65 chr13 69771415 69771600 -49973298 - MIR SINE MIR -57 205 23 26 30 0 0 chr13 69771712 69771745 -49973153 + AT_rich Low_complexity Low_complexity 1 33 0 211 189 0 0 chr13 69772171 69772208 -49972690 + (CA)n Simple_repeat Simple_repeat 2 38 0 954 290 65 54 chr13 69772219 69772715 -49972183 - MLT1H1 LTR MaLR -7 548 48 1420 196 29 18 chr13 69772719 69773060 -49971838 - L1MA8 LINE L1 -8 6283 5939 22 35 0 0 chr13 69773154 69773183 -49971715 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 69773510 69773533 -49971365 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 69774921 69774943 -49969955 + AT_rich Low_complexity Low_complexity 1 22 0 603 324 29 19 chr13 69775595 69775788 -49969110 - HAL1 LINE L1 -1 2506 2316 430 177 0 0 chr13 69775788 69775867 -49969031 - MADE1 DNA Mariner -1 79 1 603 324 29 19 chr13 69775867 69776083 -49968815 - HAL1 LINE L1 -191 2316 2093 21 0 0 0 chr13 69776137 69776158 -49968740 + AT_rich Low_complexity Low_complexity 1 21 0 1739 207 6 3 chr13 69776181 69776509 -49968389 - ERVL LTR ERVL -1284 4480 4152 4469 224 19 20 chr13 69776523 69777669 -49967229 - L1 LINE L1 -1249 4897 3753 250 202 125 60 chr13 69777660 69777828 -49967070 - L1M4c LINE L1 -4045 2601 2423 * 22 88 0 0 chr13 69777835 69777892 -49967006 + AT_rich Low_complexity Low_complexity 1 57 0 31 0 0 0 chr13 69777919 69777950 -49966948 + AT_rich Low_complexity Low_complexity 1 31 0 640 262 52 31 chr13 69778084 69778358 -49966540 - L1M4c LINE L1 -4600 2046 1796 3398 276 52 46 chr13 69778363 69779775 -49965123 - L1M4c LINE L1 -4840 1702 283 40 67 0 0 chr13 69780892 69780967 -49963931 + AT_rich Low_complexity Low_complexity 1 75 0 23 33 0 0 chr13 69781191 69781221 -49963677 + AT_rich Low_complexity Low_complexity 1 30 0 1812 156 13 25 chr13 69782144 69782458 -49962440 - AluSx SINE Alu -2 310 1 21 36 0 0 chr13 69782560 69782588 -49962310 + AT_rich Low_complexity Low_complexity 1 28 0 1581 158 11 0 chr13 69782924 69783189 -49961709 + AluSx SINE Alu 33 300 -12 23 54 0 0 chr13 69783961 69783998 -49960900 + AT_rich Low_complexity Low_complexity 1 37 0 1490 188 35 120 chr13 69785555 69786071 -49958827 - LTR1B LTR ERV1 -13 813 342 309 26 0 0 chr13 69786217 69786255 -49958643 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1164 123 0 0 chr13 69786271 69786433 -49958465 - AluSq SINE Alu -78 235 74 673 303 0 11 chr13 69786442 69786627 -49958271 - LTR1 LTR ERV1 -602 183 1 453 250 40 14 chr13 69786684 69786832 -49958066 + L1ME2 LINE L1 6003 6154 -10 22 70 0 0 chr13 69787329 69787372 -49957526 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 69787605 69787634 -49957264 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr13 69788443 69788495 -49956403 + AT_rich Low_complexity Low_complexity 1 52 0 26 74 0 0 chr13 69788521 69788575 -49956323 + AT_rich Low_complexity Low_complexity 1 54 0 1877 195 54 37 chr13 69789143 69789624 -49955274 - L1MA9 LINE L1 -31 6281 5793 288 0 0 0 chr13 69789630 69789662 -49955236 + (TG)n Simple_repeat Simple_repeat 1 32 0 1249 184 23 27 chr13 69789662 69789918 -49954980 - Tigger2 DNA MER2_type -12 2706 2452 1667 199 64 11 chr13 69789985 69790346 -49954552 - Tigger2 DNA MER2_type -1974 744 365 1109 213 73 13 chr13 69790352 69790652 -49954246 + MER46B DNA MER2_type 44 236 0 651 238 60 0 chr13 69790656 69790824 -49954074 - Tigger1 DNA MER2_type 0 2418 2241 21 36 0 0 chr13 69790838 69790866 -49954032 + AT_rich Low_complexity Low_complexity 1 28 0 245 28 28 0 chr13 69790868 69790904 -49953994 - Tigger1 DNA MER2_type -167 2251 2215 4349 110 5 7 chr13 69790904 69791577 -49953321 + L1MA2 LINE L1 5628 6298 -6 774 150 0 23 chr13 69791666 69791799 -49953099 - Tigger1 DNA MER2_type -187 2231 2102 10626 155 17 7 chr13 69791800 69793716 -49951182 - L1P LINE L1 -1554 4592 2658 9188 171 30 32 chr13 69793721 69794145 -49950753 - Tigger1 DNA MER2_type -334 2084 1661 1293 110 48 4 chr13 69794145 69794373 -49950525 - L1MA3 LINE L1 -2 6303 6066 9188 171 30 32 chr13 69794373 69794840 -49950058 - Tigger1 DNA MER2_type -757 1661 1194 2394 62 10 3 chr13 69794840 69795149 -49949749 + AluY SINE Alu 1 311 0 9188 171 30 32 chr13 69795149 69796139 -49948759 - Tigger1 DNA MER2_type -1224 1194 206 1962 169 46 34 chr13 69796139 69796684 -49948214 + MLT2A2 LTR ERVL 1 552 -2 711 236 39 0 chr13 69796686 69796864 -49948034 - Tigger1 DNA MER2_type -2208 210 26 558 204 37 11 chr13 69796872 69797026 -49947872 - L1MA9 LINE L1 -401 5777 5639 23 0 0 0 chr13 69797198 69797221 -49947677 + AT_rich Low_complexity Low_complexity 1 23 0 238 372 44 17 chr13 69798328 69798508 -49946390 - L2 LINE L2 -930 2384 2200 864 332 79 22 chr13 69798732 69799502 -49945396 - L2 LINE L2 0 3313 2503 209 348 70 32 chr13 69800115 69800302 -49944596 + L3 LINE CR1 888 1081 -496 180 219 0 0 chr13 69800422 69800463 -49944435 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 228 431 15 0 chr13 69800625 69800762 -49944136 + L2 LINE L2 2949 3087 -226 29 28 0 0 chr13 69800774 69800810 -49944088 + AT_rich Low_complexity Low_complexity 1 36 0 351 294 0 0 chr13 69801524 69801626 -49943272 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 31 26 0 0 chr13 69802297 69802335 -49942563 + AT_rich Low_complexity Low_complexity 1 38 0 283 224 31 10 chr13 69802637 69802735 -49942163 - SATR1 Satellite Satellite -212 258 159 40 21 0 0 chr13 69803219 69803266 -49941632 + AT_rich Low_complexity Low_complexity 1 47 0 22 70 0 0 chr13 69803350 69803393 -49941505 + AT_rich Low_complexity Low_complexity 1 43 0 2206 107 3 0 chr13 69804539 69804838 -49940060 - AluSq SINE Alu -13 300 1 1536 196 95 3 chr13 69805695 69806022 -49938876 + MLT1A1 LTR MaLR 1 357 -8 251 225 51 45 chr13 69806054 69806232 -49938666 + (TA)n Simple_repeat Simple_repeat 1 179 0 180 395 34 0 chr13 69806497 69806616 -49938282 - L3 LINE CR1 -13 1564 1442 2995 221 59 39 chr13 69807348 69808324 -49936574 - L1MD1 LINE L1 -59 6183 5186 678 218 31 109 chr13 69808319 69808511 -49936387 - L1MA8 LINE L1 -25 6266 6117 * 1271 97 0 11 chr13 69808511 69808696 -49936202 - L1PB1 LINE L1 0 6151 5969 678 218 31 109 chr13 69808696 69808888 -49936010 - L1MA8 LINE L1 -174 6117 5912 811 255 37 25 chr13 69808888 69809213 -49935685 - L1MD1 LINE L1 -940 5206 4878 22 0 0 0 chr13 69809319 69809341 -49935557 + AT_rich Low_complexity Low_complexity 1 22 0 1703 145 71 0 chr13 69809557 69809840 -49935058 - AluSx SINE Alu -9 303 1 39 22 0 0 chr13 69810081 69810127 -49934771 + AT_rich Low_complexity Low_complexity 1 46 0 268 279 108 0 chr13 69811176 69811287 -49933611 - MLT1J1 LTR MaLR -2 444 322 425 314 52 12 chr13 69811366 69811538 -49933360 - MLT1J2 LTR MaLR -271 179 1 184 347 0 42 chr13 69811881 69811953 -49932945 - MIR3 SINE MIR -38 170 102 5013 52 38 5 chr13 69812127 69812785 -49932113 + L1PA8 LINE L1 5480 6159 -13 332 221 8 98 chr13 69813774 69813838 -49931060 - MLT1J1 LTR MaLR -296 150 101 662 273 11 6 chr13 69813838 69814014 -49930884 + MER45A DNA AcHobo 2 178 0 332 221 8 98 chr13 69814014 69814071 -49930827 - MLT1J1 LTR MaLR -345 101 40 276 282 0 13 chr13 69814879 69814957 -49929941 + GA-rich Low_complexity Low_complexity 3 79 0 28 29 0 0 chr13 69815410 69815445 -49929453 + AT_rich Low_complexity Low_complexity 1 35 0 318 115 0 0 chr13 69815611 69815663 -49929235 + (TC)n Simple_repeat Simple_repeat 2 53 0 363 302 9 17 chr13 69815914 69816030 -49928868 + ERVL LTR ERVL 2891 3005 -2759 386 353 60 8 chr13 69816362 69816628 -49928270 + ERVL LTR ERVL 3154 3433 -2331 2276 96 7 0 chr13 69816791 69817094 -49927804 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr13 69817324 69817345 -49927553 + AT_rich Low_complexity Low_complexity 1 21 0 1069 229 108 38 chr13 69817824 69818165 -49926733 + MLT1A1 LTR MaLR 1 365 0 374 329 77 70 chr13 69818241 69818554 -49926344 + LTR67 LTR ERVL 181 495 -62 4045 150 32 0 chr13 69818554 69819249 -49925649 + L1PA13 LINE L1 5447 6163 0 2120 141 0 0 chr13 69819392 69819698 -49925200 - AluSq SINE Alu -6 307 2 479 262 32 98 chr13 69819715 69820062 -49924836 - MER46C DNA MER2_type -14 324 1 25 31 0 0 chr13 69820173 69820205 -49924693 + AT_rich Low_complexity Low_complexity 1 32 0 216 290 58 0 chr13 69820808 69820877 -49924021 - L2 LINE L2 -14 3299 3227 28 0 0 0 chr13 69821280 69821308 -49923590 + AT_rich Low_complexity Low_complexity 1 28 0 1578 253 48 36 chr13 69821343 69821737 -49923161 - L1ME LINE L1 -432 5734 5346 1976 118 0 0 chr13 69821737 69822008 -49922890 - AluSc SINE Alu 0 309 39 1578 253 48 36 chr13 69822008 69822543 -49922355 - L1ME LINE L1 -820 5346 4783 23 54 0 0 chr13 69822586 69822623 -49922275 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 69823114 69823135 -49921763 + AT_rich Low_complexity Low_complexity 1 21 0 310 336 75 44 chr13 69824951 69825246 -49919652 + HAL1 LINE L1 1674 1977 -530 554 281 130 24 chr13 69825783 69826036 -49918862 + LTR50 LTR ERVL 1 280 -515 671 230 6 6 chr13 69826057 69826222 -49918676 - L1PA16 LINE L1 -8 6158 5994 2252 147 8 0 chr13 69826222 69826583 -49918315 + L1PA16 LINE L1 5624 5987 -179 2315 71 7 0 chr13 69827259 69827567 -49917331 + AluSg SINE Alu 1 310 0 199 114 45 0 chr13 69828248 69828292 -49916606 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1465 236 119 11 chr13 69828901 69829355 -49915543 - L1MC/D LINE L1 -2173 5822 5320 339 132 33 11 chr13 69829381 69829472 -49915426 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 1701 212 5 8 chr13 69829479 69829857 -49915041 - L1MC/D LINE L1 -3449 2697 2321 12731 202 25 9 chr13 69829980 69830342 -49914556 - L1PB1 LINE L1 -5 6862 6507 243 0 0 0 chr13 69830342 69830369 -49914529 + (TA)n Simple_repeat Simple_repeat 1 27 0 12731 202 25 9 chr13 69830369 69833885 -49911013 - L1PB1 LINE L1 -360 6507 2925 6480 148 16 4 chr13 69833855 69834908 -49909990 - L1PB1 LINE L1 -5794 1069 4 * 34 24 0 0 chr13 69835180 69835221 -49909677 + AT_rich Low_complexity Low_complexity 1 41 0 225 94 0 0 chr13 69835821 69835853 -49909045 + (TA)n Simple_repeat Simple_repeat 1 32 0 271 367 33 33 chr13 69836924 69837104 -49907794 - MIR SINE MIR -10 252 73 21 0 0 0 chr13 69837692 69837713 -49907185 + AT_rich Low_complexity Low_complexity 1 21 0 2003 107 66 33 chr13 69839657 69840020 -49904878 - THE1C LTR MaLR 0 375 1 180 158 0 0 chr13 69840343 69840381 -49904517 + (TA)n Simple_repeat Simple_repeat 2 39 0 2014 118 6 38 chr13 69840384 69840697 -49904201 - AluSq SINE Alu -10 303 1 190 268 16 114 chr13 69842848 69842971 -49901927 - L2 LINE L2 -478 2836 2726 437 271 23 15 chr13 69843100 69843233 -49901665 + Charlie1a DNA MER1_type 1 134 -1321 1130 183 58 35 chr13 69843249 69843560 -49901338 + Charlie1a DNA MER1_type 251 568 -887 198 324 73 0 chr13 69843629 69843697 -49901201 - MIR SINE MIR -58 150 78 267 250 0 31 chr13 69843866 69843930 -49900968 - MER5B DNA MER1_type -44 134 73 1974 172 46 14 chr13 69843944 69844310 -49900588 - MER61D LTR ERV1 -10 491 114 273 196 59 0 chr13 69844364 69844415 -49900483 + MER5B DNA MER1_type 125 178 0 242 241 0 0 chr13 69844418 69844472 -49900426 + A-rich Low_complexity Low_complexity 1 54 0 6661 238 43 85 chr13 69845493 69848352 -49896546 - L1M1 LINE L1 -4015 3550 16 22 56 0 0 chr13 69848990 69849026 -49895872 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr13 69849091 69849130 -49895768 + AT_rich Low_complexity Low_complexity 1 39 0 600 262 42 55 chr13 69850780 69851017 -49893881 + MLT1D LTR MaLR 1 234 -271 1130 247 78 23 chr13 69851017 69851325 -49893573 - MLT1A1 LTR MaLR -40 325 1 440 222 0 28 chr13 69851328 69851436 -49893462 + MLT1D LTR MaLR 363 467 0 21 0 0 0 chr13 69851517 69851538 -49893360 + AT_rich Low_complexity Low_complexity 1 21 0 313 257 28 69 chr13 69851691 69851835 -49893063 - MLT1J2 LTR MaLR -290 160 23 409 254 71 40 chr13 69852024 69852150 -49892748 + MLT2C1 LTR ERVL 217 346 -51 213 121 0 0 chr13 69852466 69852499 -49892399 + (TG)n Simple_repeat Simple_repeat 2 34 0 258 167 0 42 chr13 69852505 69852553 -49892345 + MLT2C1 LTR ERVL 350 395 -2 27 29 0 0 chr13 69852664 69852698 -49892200 + AT_rich Low_complexity Low_complexity 1 34 0 198 91 0 0 chr13 69852964 69852997 -49891901 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 297 261 65 96 chr13 69854292 69854531 -49890367 + L1MEd LINE L1 916 1142 -4977 2242 112 0 0 chr13 69854531 69854835 -49890063 + AluSc SINE Alu 2 305 -4 297 261 65 96 chr13 69854835 69854948 -49889950 + L1MEd LINE L1 1142 1257 -4862 22 0 0 0 chr13 69855151 69855173 -49889725 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr13 69855183 69855237 -49889661 + AT_rich Low_complexity Low_complexity 1 54 0 24 77 0 0 chr13 69855287 69855339 -49889559 + AT_rich Low_complexity Low_complexity 1 52 0 378 193 0 0 chr13 69855386 69855474 -49889424 + L1MB4 LINE L1 6093 6180 0 721 175 206 0 chr13 69855612 69855772 -49889126 - MLT2B2 LTR ERVL -1 514 322 207 232 0 0 chr13 69856295 69856351 -49888547 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chr13 69856361 69856385 -49888513 + AT_rich Low_complexity Low_complexity 1 24 0 238 231 0 15 chr13 69856480 69856545 -49888353 + (TA)n Simple_repeat Simple_repeat 2 65 0 22 0 0 0 chr13 69856979 69857001 -49887897 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 69857122 69857160 -49887738 + AT_rich Low_complexity Low_complexity 1 38 0 268 376 57 0 chr13 69857674 69857815 -49887083 - MIR SINE MIR 0 262 114 228 270 40 105 chr13 69857903 69858055 -49886843 + L2 LINE L2 2828 2969 -345 21 0 0 0 chr13 69858417 69858438 -49886460 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr13 69859461 69859486 -49885412 + AT_rich Low_complexity Low_complexity 1 25 0 2086 216 28 30 chr13 69860438 69860980 -49883918 + L1PB3 LINE L1 3473 4013 -2133 7348 37 2 2 chr13 69860980 69862245 -49882653 + L1PA5 LINE L1 4890 6154 0 4303 181 45 37 chr13 69862247 69863305 -49881593 + L1PB3 LINE L1 4456 5514 -640 2267 136 13 11 chr13 69863305 69863679 -49881219 + THE1C LTR MaLR 1 375 0 4303 181 45 37 chr13 69863679 69864326 -49880572 + L1PB3 LINE L1 5514 6154 0 193 347 27 0 chr13 69864359 69864434 -49880464 - L2 LINE L2 -75 3238 3162 1813 153 20 3 chr13 69864704 69864998 -49879900 + AluSx SINE Alu 1 299 -13 208 328 111 74 chr13 69865031 69865275 -49879623 - L2 LINE L2 -436 2878 2626 371 324 47 88 chr13 69865423 69865763 -49879135 - L2 LINE L2 -740 2574 2249 206 303 0 66 chr13 69866411 69866487 -49878411 - L2 LINE L2 -7 3306 3236 306 303 80 49 chr13 69867059 69867323 -49877575 + L1MC/D LINE L1 4 275 -5844 22 35 0 0 chr13 69867935 69867964 -49876934 + AT_rich Low_complexity Low_complexity 1 29 0 533 275 119 37 chr13 69867971 69868266 -49876632 + L1ME2 LINE L1 5836 6154 -10 229 247 37 12 chr13 69868799 69868880 -49876018 + L1MC/D LINE L1 740 822 -5297 517 323 72 4 chr13 69869095 69869374 -49875524 + L1MC/D LINE L1 3003 3300 -2829 11234 221 27 50 chr13 69869442 69870615 -49874283 + L1PA16 LINE L1 1708 2907 -3259 2423 55 0 7 chr13 69870615 69870907 -49873991 + AluY SINE Alu 1 290 -21 11234 221 27 50 chr13 69870907 69871578 -49873320 + L1PA16 LINE L1 2907 3592 -2574 186 43 0 0 chr13 69871578 69871601 -49873297 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 11234 221 27 50 chr13 69871601 69874310 -49870588 + L1PA16 LINE L1 3592 6155 -11 526 272 25 47 chr13 69874326 69874561 -49870337 + L1MC/D LINE L1 5392 5621 -2170 765 193 7 0 chr13 69874669 69874809 -49870089 + L1M3f LINE L1 4 144 -5184 252 0 0 0 chr13 69874883 69874911 -49869987 + (TG)n Simple_repeat Simple_repeat 1 28 0 229 325 0 0 chr13 69875243 69875320 -49869578 - MIR SINE MIR -26 236 160 1117 180 50 0 chr13 69875647 69875847 -49869051 + AluSg/x SINE Alu 86 295 -17 213 211 33 11 chr13 69878381 69878471 -49866427 + (TA)n Simple_repeat Simple_repeat 1 92 0 4385 63 2 0 chr13 69879068 69879627 -49865271 + L1PA7 LINE L1 5593 6152 -2 27 0 0 0 chr13 69879627 69879654 -49865244 + AT_rich Low_complexity Low_complexity 1 27 0 939 200 117 53 chr13 69879667 69880052 -49864846 - LTR1B LTR ERV1 0 826 373 26 30 0 0 chr13 69880835 69880868 -49864030 + AT_rich Low_complexity Low_complexity 1 33 0 1849 225 90 3 chr13 69880944 69881522 -49863376 + Charlie1 DNA MER1_type 2066 2693 -68 230 95 0 0 chr13 69881523 69881565 -49863333 + L1PA15 LINE L1 6122 6163 -2 269 271 0 0 chr13 69882063 69882133 -49862765 - L1ME LINE L1 -558 5612 5543 6288 150 10 9 chr13 69882148 69883568 -49861330 - L1MA3 LINE L1 0 6305 4885 274 284 0 0 chr13 69883680 69883768 -49861130 + (CATA)n Simple_repeat Simple_repeat 3 90 0 267 313 37 0 chr13 69883769 69883903 -49860995 - L1ME LINE L1 -875 5271 5133 21 71 0 0 chr13 69884002 69884044 -49860854 + AT_rich Low_complexity Low_complexity 1 42 0 1060 280 115 16 chr13 69884347 69884919 -49859979 - L1MC4 LINE L1 -150 7892 7254 783 316 37 25 chr13 69884935 69885273 -49859625 - L1MC4 LINE L1 -958 7084 6738 2320 88 0 7 chr13 69885273 69885580 -49859318 + AluY SINE Alu 1 305 -6 783 316 37 25 chr13 69885580 69885674 -49859224 - L1MC4 LINE L1 -1304 6738 6647 239 130 159 14 chr13 69885719 69885788 -49859110 + L1MC4 LINE L1 6615 6693 -1349 21 57 0 0 chr13 69885790 69885825 -49859073 + AT_rich Low_complexity Low_complexity 1 35 0 32 26 0 0 chr13 69886351 69886390 -49858508 + AT_rich Low_complexity Low_complexity 1 39 0 1520 297 42 38 chr13 69887746 69888295 -49856603 + L1M3e LINE L1 470 1020 -6469 3812 263 53 19 chr13 69888440 69890375 -49854523 + L1M3e LINE L1 2008 4008 -3557 930 177 0 31 chr13 69890402 69890594 -49854304 + L1M3e LINE L1 4766 4951 -2614 663 175 21 77 chr13 69890617 69890760 -49854138 - AluJb SINE Alu -15 297 163 353 282 50 72 chr13 69890987 69891168 -49853730 - L1M3d LINE L1 -5711 180 4 443 143 0 44 chr13 69891261 69891352 -49853546 - L1P LINE L1 -1599 4547 4461 449 316 230 17 chr13 69892104 69892573 -49852325 + L2 LINE L2 747 1315 -1999 384 276 63 41 chr13 69892575 69892796 -49852102 - LTR16B LTR ERVL 0 464 239 632 308 163 60 chr13 69892973 69893825 -49851073 + L2 LINE L2 1310 2249 -1065 217 228 41 24 chr13 69893863 69893986 -49850912 + (TATAA)n Simple_repeat Simple_repeat 4 128 0 186 332 153 63 chr13 69894161 69894384 -49850514 + L2 LINE L2 586 828 -2486 2616 39 0 3 chr13 69895325 69895637 -49849261 - AluYa5 SINE Alu 0 311 1 1379 161 47 23 chr13 69895637 69895998 -49848900 + MER65A-int LTR ERV1 3008 3789 -1147 5109 230 68 9 chr13 69896038 69896998 -49847900 + MER65A-int LTR ERV1 3513 4537 -334 183 80 0 0 chr13 69896998 69897023 -49847875 + (TG)n Simple_repeat Simple_repeat 2 26 0 5109 230 68 9 chr13 69897023 69897358 -49847540 + MER65A-int LTR ERV1 4537 4851 -20 186 133 0 0 chr13 69897369 69897399 -49847499 + (A)n Simple_repeat Simple_repeat 1 30 0 2442 158 16 14 chr13 69897399 69897843 -49847055 + MER65A LTR ERV1 1 445 0 34 55 0 0 chr13 69903009 69903064 -49841834 + AT_rich Low_complexity Low_complexity 1 55 0 253 163 20 0 chr13 69903866 69903915 -49840983 + HSMAR1 DNA Mariner 1237 1286 -1 5366 115 1 0 chr13 69904365 69905163 -49839735 + L1P LINE L1 3673 4471 -1675 1432 106 0 9 chr13 69905163 69905378 -49839520 + L1PA8 LINE L1 5955 6169 -3 1853 76 69 18 chr13 69905829 69906104 -49838794 - AluY SINE Alu -21 290 2 2224 85 0 0 chr13 69906500 69906816 -49838082 - AluSg SINE Alu 0 316 1 200 235 20 0 chr13 69907503 69907554 -49837344 + A-rich Low_complexity Low_complexity 2 53 0 21 36 0 0 chr13 69907986 69908014 -49836884 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr13 69908517 69908545 -49836353 + (CA)n Simple_repeat Simple_repeat 2 29 0 222 282 77 13 chr13 69909434 69909512 -49835386 + MIR SINE MIR 33 115 -147 213 138 50 50 chr13 69910542 69910622 -49834276 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr13 69910655 69910681 -49834217 + AT_rich Low_complexity Low_complexity 1 26 0 839 202 0 35 chr13 69911244 69911417 -49833481 - FAM SINE Alu -8 167 1 300 281 98 33 chr13 69911420 69911573 -49833325 + L1ME4a LINE L1 5704 5866 -255 477 62 0 0 chr13 69911879 69911944 -49832954 + (CA)n Simple_repeat Simple_repeat 2 66 0 25 0 0 0 chr13 69912485 69912510 -49832388 + AT_rich Low_complexity Low_complexity 1 25 0 269 140 18 0 chr13 69913045 69913102 -49831796 + (TTA)n Simple_repeat Simple_repeat 2 59 0 408 325 134 23 chr13 69913583 69913925 -49830973 - L2 LINE L2 0 3313 2934 242 331 103 28 chr13 69914643 69914788 -49830110 - MIR SINE MIR -48 214 59 221 321 127 30 chr13 69914884 69915018 -49829880 - MIR3 SINE MIR -24 184 38 192 333 118 35 chr13 69915449 69915593 -49829305 - MIR SINE MIR -100 162 7 352 332 34 75 chr13 69916670 69916938 -49827960 + MIR SINE MIR 6 262 0 369 331 36 0 chr13 69917649 69917788 -49827110 + L2 LINE L2 1841 1984 -1330 23 0 0 0 chr13 69919427 69919450 -49825448 + AT_rich Low_complexity Low_complexity 1 23 0 209 355 130 45 chr13 69920051 69920626 -49824272 + L2 LINE L2 1737 2360 -954 206 376 25 19 chr13 69920978 69921135 -49823763 + L2 LINE L2 2552 2709 -605 1967 179 31 42 chr13 69921758 69922239 -49822659 - L1MA7 LINE L1 -6 6285 5810 219 344 115 8 chr13 69923312 69923434 -49821464 + MIR SINE MIR 74 208 -54 206 196 36 0 chr13 69923528 69923584 -49821314 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 30 0 0 0 chr13 69925627 69925657 -49819241 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 69926035 69926065 -49818833 + AT_rich Low_complexity Low_complexity 1 30 0 228 35 0 0 chr13 69926188 69926217 -49818681 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 125 0 0 chr13 69926246 69926278 -49818620 + (GA)n Simple_repeat Simple_repeat 1 32 0 3875 149 35 9 chr13 69927943 69928676 -49816222 - Tigger3(Golem) DNA MER2_type 0 3029 2278 588 220 0 9 chr13 69928667 69928776 -49816122 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 188 290 129 52 chr13 69929190 69929345 -49815553 - MIR SINE MIR -89 173 7 235 395 92 0 chr13 69930532 69930717 -49814181 - MIR SINE MIR -59 203 2 380 293 180 37 chr13 69931479 69931746 -49813152 + L2 LINE L2 2935 3259 -54 2273 98 44 22 chr13 69931746 69932113 -49812785 + THE1C LTR MaLR 1 375 0 380 293 180 37 chr13 69932113 69932173 -49812725 + L2 LINE L2 3259 3309 -4 2076 119 7 3 chr13 69934270 69934565 -49810333 + AluSx SINE Alu 2 297 -15 306 258 0 11 chr13 69934746 69934835 -49810063 + L1MC3 LINE L1 7690 7777 -8 282 276 86 33 chr13 69934901 69935111 -49809787 - L1ME LINE L1 -240 5881 5661 22 0 0 0 chr13 69936302 69936324 -49808574 + AT_rich Low_complexity Low_complexity 1 22 0 181 349 36 0 chr13 69937578 69937661 -49807237 + L2 LINE L2 3224 3309 -4 245 380 143 30 chr13 69938171 69939251 -49805647 - L2 LINE L2 -594 2720 1519 317 242 81 24 chr13 69939817 69939941 -49804957 + LTR33A LTR ERVL 393 523 0 22 35 0 0 chr13 69940142 69940171 -49804727 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 69940360 69940388 -49804510 + AT_rich Low_complexity Low_complexity 1 28 0 1627 134 35 3 chr13 69940445 69940728 -49804170 + L1MA8 LINE L1 5999 6290 -1 521 257 153 79 chr13 69940876 69941381 -49803517 - MLT1F LTR MaLR 0 542 1 417 308 120 36 chr13 69942135 69942668 -49802230 - L1MCa LINE L1 -3220 3206 2629 3930 85 11 7 chr13 69943062 69943614 -49801284 - MER41A LTR ERV1 0 554 1 484 281 96 62 chr13 69943992 69944345 -49800553 - L2 LINE L2 0 3313 2949 255 61 0 0 chr13 69945072 69945105 -49799793 + (CA)n Simple_repeat Simple_repeat 1 33 0 355 261 202 82 chr13 69945153 69945629 -49799269 - MLT2F LTR ERVL -3 660 128 381 268 27 18 chr13 69945750 69945862 -49799036 - Ricksha DNA DNA -2890 356 244 * 520 309 27 0 chr13 69945762 69945911 -49798987 - ERVL-F LTR ERVL -8 5756 5604 1347 132 9 35 chr13 69946124 69946351 -49798547 - THE1B LTR MaLR 0 364 144 331 262 48 48 chr13 69947116 69947242 -49797656 - L1MCa LINE L1 -4917 1509 1384 210 223 0 85 chr13 69947735 69947829 -49797069 + T-rich Low_complexity Low_complexity 4 89 0 2031 127 13 0 chr13 69947870 69948169 -49796729 - AluSg SINE Alu -7 303 1 705 318 51 63 chr13 69949237 69949725 -49795173 - L2 LINE L2 -10 3303 2822 2711 174 8 8 chr13 69949787 69950264 -49794634 + MER31A LTR ERV1 1 477 -8 1867 211 10 13 chr13 69951392 69951780 -49793118 + MLT1B LTR MaLR 1 387 -3 931 245 98 46 chr13 69954308 69954655 -49790243 - MLT1A1 LTR MaLR 0 365 1 503 361 41 20 chr13 69956121 69956315 -49788583 + ERVL LTR ERVL 1864 2052 -3647 2090 114 9 25 chr13 69956315 69956632 -49788266 - AluSx SINE Alu 0 312 1 503 361 41 20 chr13 69956632 69956890 -49788008 + ERVL LTR ERVL 2052 2372 -3327 1045 317 73 34 chr13 69956955 69957574 -49787324 + ERVL LTR ERVL 2526 3168 -2596 717 210 23 46 chr13 69959173 69959394 -49785504 + L1M LINE L1 5152 5365 -806 202 279 116 12 chr13 69959885 69959971 -49784927 - MIR SINE MIR -44 218 124 559 379 68 14 chr13 69960112 69960600 -49784298 + ERVL LTR ERVL 4072 4585 -1179 231 156 0 0 chr13 69960835 69960880 -49784018 - L1MA3 LINE L1 0 6305 6261 251 366 98 7 chr13 69960908 69961061 -49783837 - LTR16A LTR ERVL -69 381 215 597 346 181 6 chr13 69961710 69962048 -49782850 + LTR16A LTR ERVL 54 450 0 1993 102 46 0 chr13 69962069 69962354 -49782544 + AluSp SINE Alu 1 298 -15 264 131 83 12 chr13 69962381 69962465 -49782433 + (TA)n Simple_repeat Simple_repeat 2 91 0 350 241 84 52 chr13 69963427 69963618 -49781280 - L1MA8 LINE L1 -2 6289 6093 21 0 0 0 chr13 69963642 69963663 -49781235 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr13 69964215 69964244 -49780654 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 69964254 69964283 -49780615 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr13 69964305 69964348 -49780550 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 69964701 69964729 -49780169 + AT_rich Low_complexity Low_complexity 1 28 0 292 372 0 0 chr13 69964778 69964872 -49780026 - MIR SINE MIR -155 107 14 44 75 0 0 chr13 69965152 69965245 -49779653 + AT_rich Low_complexity Low_complexity 1 93 0 189 214 0 0 chr13 69965903 69965945 -49778953 + (TA)n Simple_repeat Simple_repeat 2 43 0 440 285 64 31 chr13 69965964 69966239 -49778659 + L1M4 LINE L1 5144 5426 -748 210 150 0 0 chr13 69966239 69966279 -49778619 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr13 69966515 69966539 -49778359 + AT_rich Low_complexity Low_complexity 1 24 0 681 323 10 7 chr13 69967005 69967296 -49777602 + L1PA12 LINE L1 7 298 -7283 1011 254 34 38 chr13 69968543 69968834 -49776064 + L1PA12 LINE L1 2018 2307 -5267 * 3357 221 20 27 chr13 69968825 69970068 -49774830 - L1PA13 LINE L1 -4083 2714 1509 * 8786 234 21 13 chr13 69970065 69971492 -49773406 + L1P LINE L1 2968 4421 -1725 276 30 0 0 chr13 69971492 69971525 -49773373 + (CA)n Simple_repeat Simple_repeat 2 34 0 8786 234 21 13 chr13 69971525 69972359 -49772539 + L1P LINE L1 4421 5247 -899 40 49 0 0 chr13 69972364 69972425 -49772473 + AT_rich Low_complexity Low_complexity 1 61 0 12368 200 20 19 chr13 69972451 69973104 -49771794 - L1MA2 LINE L1 -10 7713 7062 3800 155 16 0 chr13 69973104 69973729 -49771169 - MER41B LTR ERV1 0 635 1 12368 200 20 19 chr13 69973729 69974645 -49770253 - L1MA2 LINE L1 -661 7062 6149 213 94 0 0 chr13 69974645 69974677 -49770221 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 12368 200 20 19 chr13 69974677 69978062 -49766836 - L1MA2 LINE L1 -1574 6149 2757 237 196 0 0 chr13 69978058 69978114 -49766784 + L1MC4 LINE L1 6648 6703 -1339 * 741 218 22 2 chr13 69978288 69978481 -49766417 - L1MC2 LINE L1 -238 5932 5801 21 0 0 0 chr13 69979759 69979780 -49765118 + AT_rich Low_complexity Low_complexity 1 21 0 717 281 70 48 chr13 69979842 69980469 -49764429 + L1ME3 LINE L1 4194 4834 -1312 642 205 0 8 chr13 69980470 69980592 -49764306 + AluJb SINE Alu 1 121 -191 1254 163 0 10 chr13 69980641 69980843 -49764055 + AluJb SINE Alu 110 309 -3 216 0 0 0 chr13 69980843 69980867 -49764031 + (TA)n Simple_repeat Simple_repeat 1 24 0 1212 294 96 35 chr13 69980876 69982120 -49762778 + L1ME3 LINE L1 4832 6157 -5 246 315 206 0 chr13 69982892 69982984 -49761914 - L2 LINE L2 -19 3294 3184 489 311 174 5 chr13 69983013 69983225 -49761673 - MIR SINE MIR -3 259 12 426 125 0 47 chr13 69983326 69983454 -49761444 + (TA)n Simple_repeat Simple_repeat 2 123 0 258 306 64 17 chr13 69983518 69983753 -49761145 + HAL1b LINE L1 840 1085 -263 21 89 0 0 chr13 69984041 69984097 -49760801 + AT_rich Low_complexity Low_complexity 1 56 0 308 317 89 64 chr13 69984255 69984305 -49760593 - LTR16B LTR ERVL 0 464 417 2217 203 26 77 chr13 69984305 69984887 -49760011 + MLT2B3 LTR ERVL 3 554 0 308 317 89 64 chr13 69984887 69985227 -49759671 - LTR16B LTR ERVL -47 417 64 505 111 33 0 chr13 69985322 69985412 -49759486 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 21 57 0 0 chr13 69986084 69986119 -49758779 + AT_rich Low_complexity Low_complexity 1 35 0 635 243 98 41 chr13 69987209 69987564 -49757334 + HsTC2 DNA Tc2 1524 1898 0 262 259 23 107 chr13 69988527 69988658 -49756240 - MIR3 SINE MIR -52 156 37 601 324 33 36 chr13 69990560 69990835 -49754063 + LTR16C LTR ERVL 217 490 -1 199 250 0 18 chr13 69992574 69992630 -49752268 + L2 LINE L2 3257 3311 -2 22 35 0 0 chr13 69992945 69992974 -49751924 + AT_rich Low_complexity Low_complexity 1 29 0 1433 219 39 21 chr13 69994514 69994848 -49750050 - MLT1A1 LTR MaLR -22 343 4 1180 149 28 5 chr13 69994851 69995066 -49749832 - MLT1A1-int LTR MaLR 0 1735 1516 353 186 17 25 chr13 69995101 69995219 -49749679 + L1M4 LINE L1 3158 3274 -2872 908 233 52 9 chr13 69995269 69995501 -49749397 - MLT1A1 LTR MaLR 0 365 124 1895 266 65 9 chr13 69995503 69996300 -49748598 - L1M4 LINE L1 -2692 3454 2613 26 74 0 0 chr13 69996465 69996519 -49748379 + AT_rich Low_complexity Low_complexity 1 54 0 189 121 0 0 chr13 69996662 69996695 -49748203 + (TA)n Simple_repeat Simple_repeat 1 33 0 251 265 0 20 chr13 69996710 69996808 -49748090 - L1MC4 LINE L1 -1339 6703 6608 180 240 30 0 chr13 69996820 69996920 -49747978 + (TA)n Simple_repeat Simple_repeat 1 103 0 356 333 0 23 chr13 69996931 69997102 -49747796 + (TATG)n Simple_repeat Simple_repeat 2 168 0 203 390 6 11 chr13 69997044 69997221 -49747677 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 240 271 47 24 chr13 69997222 69997307 -49747591 + L1MC4 LINE L1 6613 6699 -1343 330 301 6 44 chr13 69997313 69997496 -49747402 + (TATG)n Simple_repeat Simple_repeat 4 179 0 202 373 12 12 chr13 69997541 69997710 -49747188 + (TA)n Simple_repeat Simple_repeat 1 169 0 * 365 254 5 78 chr13 69997587 69997780 -49747118 + (TATG)n Simple_repeat Simple_repeat 1 179 0 415 298 11 33 chr13 69997807 69997988 -49746910 + (TATG)n Simple_repeat Simple_repeat 3 179 0 * 419 318 9 9 chr13 69997949 69998260 -49746638 + (TATATG)n Simple_repeat Simple_repeat 1 311 0 319 300 0 53 chr13 69998274 69998464 -49746434 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 412 352 0 0 chr13 69998525 69998701 -49746197 + (TA)n Simple_repeat Simple_repeat 2 177 0 282 335 0 49 chr13 69998625 69998810 -49746088 + (TATG)n Simple_repeat Simple_repeat 4 179 0 * 361 370 0 11 chr13 69998762 69998943 -49745955 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 * 435 242 0 70 chr13 69998847 69999033 -49745865 + (TATG)n Simple_repeat Simple_repeat 4 176 0 599 156 0 0 chr13 69999034 69999143 -49745755 + AluSg/x SINE Alu 200 308 -1 248 238 0 20 chr13 69999331 69999432 -49745466 + (CATATA)n Simple_repeat Simple_repeat 3 101 0 22 88 0 0 chr13 70000224 70000281 -49744617 + AT_rich Low_complexity Low_complexity 1 57 0 1663 142 0 0 chr13 70000900 70001154 -49743744 - AluSx SINE Alu 0 312 59 234 0 0 0 chr13 70001630 70001656 -49743242 + (TA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr13 70002278 70002299 -49742599 + AT_rich Low_complexity Low_complexity 1 21 0 230 183 17 17 chr13 70002439 70002499 -49742399 + (TG)n Simple_repeat Simple_repeat 1 60 0 5332 133 11 1 chr13 70002643 70003469 -49741429 - L1PA13 LINE L1 -5 6158 5325 246 311 0 0 chr13 70003741 70003831 -49741067 + L1MC4 LINE L1 6614 6703 -1339 * 250 211 22 33 chr13 70003788 70003878 -49741020 - L1MC4 LINE L1 -1340 6702 6614 212 182 0 18 chr13 70003931 70003986 -49740912 + CT-rich Low_complexity Low_complexity 2 55 0 1691 164 0 21 chr13 70004743 70005030 -49739868 + AluJo SINE Alu 1 281 -31 180 77 0 0 chr13 70005034 70005060 -49739838 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 938 286 41 59 chr13 70005212 70005719 -49739179 + L1ME3A LINE L1 5583 6080 -90 872 243 53 4 chr13 70005736 70005983 -49738915 - L1MD3 LINE L1 -12 7983 7725 1654 284 82 32 chr13 70006163 70007201 -49737697 + Charlie2a DNA MER1_type 408 1497 -1365 745 264 6 11 chr13 70007203 70007385 -49737513 + FRAM SINE Alu 1 174 -2 567 255 46 25 chr13 70007385 70007624 -49737274 + Charlie2a DNA MER1_type 1505 1748 -1114 8070 218 53 46 chr13 70007624 70008331 -49736567 - L1PB4 LINE L1 -134 6022 5322 2106 118 3 3 chr13 70008331 70008637 -49736261 - AluSq SINE Alu -5 308 3 8070 218 53 46 chr13 70008637 70010180 -49734718 - L1PB4 LINE L1 -834 5322 3732 2558 143 21 5 chr13 70010180 70010599 -49734299 + MSTA LTR MaLR 3 428 0 8070 218 53 46 chr13 70010599 70011605 -49733293 - L1PB4 LINE L1 -2424 3732 2735 8729 46 0 1 chr13 70011641 70012904 -49731994 - L1P2 LINE L1 -583 5571 4310 2978 53 0 5 chr13 70012904 70013274 -49731624 + L1PA5 LINE L1 5781 6154 0 1416 183 28 17 chr13 70013321 70013610 -49731288 - MSTB LTR MaLR -80 346 55 3106 253 15 9 chr13 70013631 70014484 -49730414 - L1PB4 LINE L1 -3452 2694 1837 * 3141 268 24 21 chr13 70014470 70015679 -49729219 - L1PA15-16 LINE L1 -3655 3194 1982 726 277 156 23 chr13 70015717 70016494 -49728404 + Charlie2a DNA MER1_type 1921 2800 -62 22 0 0 0 chr13 70016536 70016558 -49728340 + AT_rich Low_complexity Low_complexity 1 22 0 186 398 32 0 chr13 70017237 70017330 -49727568 - L2 LINE L2 -975 2339 2244 1946 253 42 32 chr13 70017330 70017859 -49727039 + MLT2B3 LTR ERVL 1 534 -20 239 247 47 18 chr13 70017860 70018030 -49726868 + (TA)n Simple_repeat Simple_repeat 1 175 0 22 35 0 0 chr13 70018230 70018259 -49726639 + AT_rich Low_complexity Low_complexity 1 29 0 354 353 95 5 chr13 70018722 70018912 -49725986 + MIR SINE MIR 45 251 -11 3725 187 32 43 chr13 70019358 70019941 -49724957 + L1MC1 LINE L1 5509 6082 -251 2458 53 7 0 chr13 70019941 70020245 -49724653 - AluY SINE Alu -5 306 1 3725 187 32 43 chr13 70020245 70020494 -49724404 + L1MC1 LINE L1 6082 6332 -1 261 344 55 6 chr13 70020542 70020725 -49724173 - L2 LINE L2 -1305 2009 1818 455 293 26 79 chr13 70021140 70021406 -49723492 - MIR SINE MIR -9 253 2 648 220 7 7 chr13 70021420 70021561 -49723337 - L1PB4 LINE L1 -9 6147 6007 1904 239 24 9 chr13 70021925 70022344 -49722554 - MSTB LTR MaLR 0 426 2 504 301 43 60 chr13 70023908 70024190 -49720708 - L3 LINE CR1 -469 1108 832 2159 126 7 0 chr13 70024531 70024841 -49720057 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 70024973 70024994 -49719904 + AT_rich Low_complexity Low_complexity 1 21 0 1207 219 21 0 chr13 70025714 70025875 -49719023 - AluJb SINE Alu -21 291 122 180 0 0 0 chr13 70025875 70025895 -49719003 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1207 219 21 0 chr13 70025895 70025975 -49718923 - AluJb SINE Alu -190 122 45 842 338 41 30 chr13 70026751 70027213 -49717685 + MER69 DNA AcHobo 5 471 -2055 896 208 6 0 chr13 70027696 70027864 -49717034 - L1MC/D LINE L1 -726 5607 5439 507 124 0 67 chr13 70028196 70028285 -49716613 - MLT2C1 LTR ERVL -8 389 307 2026 83 0 31 chr13 70028328 70028617 -49716281 + AluSc SINE Alu 1 280 -29 1039 84 0 0 chr13 70028617 70028748 -49716150 + AluY SINE Alu 2 132 -179 1854 101 17 27 chr13 70028758 70029055 -49715843 + AluY SINE Alu 1 294 -17 982 130 11 0 chr13 70029055 70029232 -49715666 + GA-rich Low_complexity Low_complexity 2 180 0 351 59 88 0 chr13 70029247 70029315 -49715583 + GA-rich Low_complexity Low_complexity 4 77 0 230 216 0 20 chr13 70029319 70029370 -49715528 - MLT2C1 LTR ERVL -140 274 225 2151 116 3 3 chr13 70029931 70030233 -49714665 + AluSp SINE Alu 1 302 -11 21 36 0 0 chr13 70032012 70032040 -49712858 + AT_rich Low_complexity Low_complexity 1 28 0 566 271 12 12 chr13 70032374 70032540 -49712358 - L1MC4a LINE L1 -1918 5890 5725 7292 39 0 17 chr13 70032540 70033528 -49711370 - L1PA4 LINE L1 0 6155 5172 10271 36 6 0 chr13 70033528 70034783 -49710115 + L1P LINE L1 3556 4818 -1328 259 251 103 57 chr13 70035276 70035451 -49709447 - L1ME3A LINE L1 -219 5951 5769 195 42 0 0 chr13 70035629 70035653 -49709245 + (TATG)n Simple_repeat Simple_repeat 4 27 0 312 232 0 24 chr13 70035653 70035735 -49709163 + MER90 LTR ERV1 490 569 -6 306 335 27 49 chr13 70036564 70036749 -49708149 - MIR SINE MIR 0 262 82 1347 247 64 64 chr13 70037145 70037664 -49707234 + LTR40a LTR ERVL 1 519 0 261 0 0 0 chr13 70038487 70038516 -49706382 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 542 262 125 16 chr13 70038739 70038987 -49705911 - MER5C DNA MER1_type -43 281 7 2086 112 0 0 chr13 70039415 70039720 -49705178 - AluSc SINE Alu 0 305 1 233 277 99 122 chr13 70041193 70041536 -49703362 - MLT1J LTR MaLR -80 431 97 1440 114 14 5 chr13 70042129 70042340 -49702558 - AluSg/x SINE Alu -15 297 85 2309 92 6 3 chr13 70042678 70043004 -49701894 - L1P4 LINE L1 -429 5734 5408 2028 120 16 7 chr13 70043761 70044070 -49700828 - AluSq SINE Alu -1 312 1 453 334 124 58 chr13 70044215 70044761 -49700137 + L2 LINE L2 2710 3311 -2 22 0 0 0 chr13 70046214 70046236 -49698662 + AT_rich Low_complexity Low_complexity 1 22 0 4526 74 28 16 chr13 70046242 70047273 -49697625 + MER11A LTR ERVK 1 1266 0 189 0 0 0 chr13 70047625 70047646 -49697252 + (CA)n Simple_repeat Simple_repeat 1 21 0 471 336 60 8 chr13 70048536 70048771 -49696127 - L2 LINE L2 -247 3066 2820 1484 278 62 27 chr13 70049780 70050474 -49694424 - MER89-int LTR ERV1 -3796 3005 148 789 230 26 96 chr13 70050518 70050861 -49694037 - MER89-int LTR ERV1 -4258 2543 2225 192 125 0 0 chr13 70051217 70051249 -49693649 + (GA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr13 70051403 70051424 -49693474 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 70051745 70051775 -49693123 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr13 70051883 70051910 -49692988 + AT_rich Low_complexity Low_complexity 1 27 0 511 352 75 29 chr13 70052027 70052411 -49692487 - MLT1H LTR MaLR -110 439 38 276 254 16 0 chr13 70052411 70052474 -49692424 - MLT1H LTR MaLR -484 65 2 2447 53 0 7 chr13 70053266 70053567 -49691331 + AluY SINE Alu 1 299 -12 234 116 0 0 chr13 70054126 70054169 -49690729 + (GA)n Simple_repeat Simple_repeat 2 44 0 200 271 17 0 chr13 70054174 70054233 -49690665 + GA-rich Low_complexity Low_complexity 2 61 0 21 57 0 0 chr13 70055118 70055153 -49689745 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chr13 70055318 70055361 -49689537 + AT_rich Low_complexity Low_complexity 1 43 0 2494 58 3 0 chr13 70055953 70056263 -49688635 + AluY SINE Alu 1 311 0 22 35 0 0 chr13 70057117 70057146 -49687752 + AT_rich Low_complexity Low_complexity 1 29 0 2368 131 27 5 chr13 70057674 70058041 -49686857 + THE1C LTR MaLR 1 375 0 36 94 0 0 chr13 70058121 70058227 -49686671 + AT_rich Low_complexity Low_complexity 1 106 0 547 313 28 0 chr13 70058819 70058998 -49685900 - MLT1H LTR MaLR -249 300 117 378 242 15 68 chr13 70059029 70059161 -49685737 + L2 LINE L2 3189 3313 0 264 30 0 0 chr13 70059339 70059372 -49685526 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 258 32 0 0 chr13 70059946 70059977 -49684921 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr13 70060368 70060389 -49684509 + AT_rich Low_complexity Low_complexity 1 21 0 1324 239 104 19 chr13 70060733 70061202 -49683696 - MER67D LTR ERV1 -3 511 3 15129 200 25 18 chr13 70061459 70065388 -49679510 - L1PA7 LINE L1 -48 6106 2156 1259 167 72 0 chr13 70065381 70065602 -49679296 + L1PA13 LINE L1 1786 2022 -4817 * 27 0 0 0 chr13 70065602 70065629 -49679269 + AT_rich Low_complexity Low_complexity 1 27 0 282 142 40 4 chr13 70065765 70065827 -49679071 + L1PA13 LINE L1 2817 2886 -3963 213 39 0 0 chr13 70066247 70066273 -49678625 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr13 70067071 70067092 -49677806 + AT_rich Low_complexity Low_complexity 1 21 0 470 48 16 0 chr13 70067434 70067497 -49677401 + MADE1 DNA Mariner 1 64 -16 208 121 0 0 chr13 70067536 70067569 -49677329 + (TG)n Simple_repeat Simple_repeat 2 34 0 412 233 14 0 chr13 70067891 70068037 -49676861 + (TA)n Simple_repeat Simple_repeat 1 148 0 2391 124 36 10 chr13 70069216 70069628 -49675270 - L1MA3 LINE L1 0 6305 5883 22 103 0 0 chr13 70070515 70070593 -49674305 + AT_rich Low_complexity Low_complexity 1 78 0 321 271 10 67 chr13 70071630 70071832 -49673066 + L1MCa LINE L1 5 171 -5874 * 1948 239 67 61 chr13 70071811 70073072 -49671826 + L1MC3 LINE L1 5114 5821 -743 2858 228 46 23 chr13 70073100 70073884 -49671014 + L1MC3 LINE L1 6984 7785 0 30 83 0 0 chr13 70074951 70075023 -49669875 + AT_rich Low_complexity Low_complexity 1 72 0 25 0 0 0 chr13 70076308 70076333 -49668565 + AT_rich Low_complexity Low_complexity 1 25 0 1585 183 0 29 chr13 70076631 70076943 -49667955 - AluSq SINE Alu -9 304 2 1667 174 7 0 chr13 70077261 70077566 -49667332 + AluSx SINE Alu 1 307 -5 213 39 0 0 chr13 70078033 70078059 -49666839 + (T)n Simple_repeat Simple_repeat 1 26 0 217 159 32 0 chr13 70080862 70080925 -49663973 + (TA)n Simple_repeat Simple_repeat 1 65 0 748 247 154 117 chr13 70081153 70082209 -49662689 + MER52A LTR ERV1 3 1755 0 1382 250 148 6 chr13 70082705 70083185 -49661713 - L1MD3 LINE L1 -9 7986 7439 493 236 24 8 chr13 70083209 70083332 -49661566 - MLT1F1 LTR MaLR -442 125 1 869 273 109 11 chr13 70083333 70083921 -49660977 - L1MD3 LINE L1 -695 7090 6588 4473 128 35 3 chr13 70083935 70084660 -49660238 - L1PA15 LINE L1 -6 6159 5412 7709 182 29 27 chr13 70084662 70087396 -49657502 + L1MA5 LINE L1 3554 6296 -4 274 336 25 33 chr13 70087494 70087616 -49657282 - MIR SINE MIR -123 139 19 577 144 43 21 chr13 70087948 70088212 -49656686 + AluJ SINE Alu 1 312 0 414 293 17 0 chr13 70088447 70088563 -49656335 - MIR SINE MIR -71 191 74 25 31 0 0 chr13 70088925 70088957 -49655941 + AT_rich Low_complexity Low_complexity 1 32 0 1915 149 3 0 chr13 70089513 70089801 -49655097 + AluSx SINE Alu 1 289 -23 28 0 0 0 chr13 70089802 70089830 -49655068 + AT_rich Low_complexity Low_complexity 1 28 0 230 188 0 21 chr13 70089851 70089899 -49654999 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 312 266 52 32 chr13 70089913 70090067 -49654831 + L1ME4a LINE L1 5957 6113 -8 251 211 19 0 chr13 70090654 70090706 -49654192 + L1MC4 LINE L1 7636 7688 -354 527 240 78 7 chr13 70090711 70090865 -49654033 + L1MC4 LINE L1 7878 8042 0 256 214 36 27 chr13 70091233 70091345 -49653553 - L1MDa LINE L1 -4086 2635 2523 331 386 47 14 chr13 70091414 70091629 -49653269 - MLT1I LTR MaLR -78 331 110 299 287 71 35 chr13 70091926 70092271 -49652627 - L1MDa LINE L1 -910 1991 1672 182 269 118 42 chr13 70092440 70092559 -49652339 - MIR SINE MIR -9 253 126 201 94 0 0 chr13 70093472 70093504 -49651394 + (TG)n Simple_repeat Simple_repeat 1 32 0 226 319 52 52 chr13 70094663 70094798 -49650100 - L2 LINE L2 -10 3303 3169 324 328 83 42 chr13 70095833 70096025 -49648873 - L2 LINE L2 -430 2884 2685 340 269 141 22 chr13 70096268 70096495 -49648403 + MER69 DNA AcHobo 2272 2525 -1 184 182 0 30 chr13 70096569 70096635 -49648263 + (TTA)n Simple_repeat Simple_repeat 3 66 0 249 33 0 0 chr13 70097212 70097242 -49647656 + (GA)n Simple_repeat Simple_repeat 1 30 0 357 301 0 19 chr13 70097427 70097530 -49647368 + GA-rich Low_complexity Low_complexity 5 105 0 192 284 116 84 chr13 70097563 70097753 -49647145 - MIR SINE MIR -55 207 12 203 401 51 29 chr13 70097957 70098094 -49646804 - L2 LINE L2 -17 3255 3116 277 267 47 0 chr13 70098580 70098666 -49646232 + L1MC3 LINE L1 3278 3367 -2779 430 237 0 17 chr13 70098709 70098827 -49646071 + L1MC3 LINE L1 4173 4288 -1858 257 289 16 8 chr13 70098905 70099033 -49645865 + (TA)n Simple_repeat Simple_repeat 1 129 0 330 218 27 55 chr13 70099037 70099147 -49645751 + L1MC3 LINE L1 4434 4540 -1606 454 272 68 41 chr13 70099149 70099462 -49645436 + L1MC3 LINE L1 5788 6018 -148 2412 273 73 29 chr13 70099486 70100806 -49644092 - L1MCa LINE L1 -1708 4856 3478 1192 308 41 11 chr13 70100808 70101369 -49643529 - L1MCa LINE L1 -3113 3451 2874 2801 96 10 22 chr13 70101370 70101775 -49643123 + MLT2A1 LTR ERVL 1 400 -44 216 108 32 54 chr13 70101796 70101889 -49643009 + (TTATA)n Simple_repeat Simple_repeat 4 94 0 36 40 0 0 chr13 70101889 70101939 -49642959 + AT_rich Low_complexity Low_complexity 1 50 0 473 16 63 0 chr13 70101966 70102029 -49642869 + MLT2A1 LTR ERVL 385 451 -2 1546 154 3 47 chr13 70102123 70102421 -49642477 - AluJb SINE Alu -12 300 16 445 294 11 6 chr13 70102433 70102613 -49642285 - L1MCa LINE L1 -3764 2800 2620 616 166 72 22 chr13 70102623 70102728 -49642170 - L1MA7 LINE L1 -26 6265 6150 1580 167 63 36 chr13 70102728 70103093 -49641805 - THE1C LTR MaLR 0 375 1 616 166 72 22 chr13 70103093 70103126 -49641772 - L1MA7 LINE L1 -141 6150 6120 231 200 15 15 chr13 70103227 70103292 -49641606 + L1PB4 LINE L1 6089 6153 -3 1212 223 36 7 chr13 70103339 70103644 -49641254 + L1MA9 LINE L1 5679 5992 -320 636 234 167 24 chr13 70103683 70104200 -49640698 - L1MCa LINE L1 -4319 2245 1566 330 313 101 5 chr13 70104195 70104393 -49640505 - L1MCa LINE L1 -5455 1109 893 * 400 335 0 26 chr13 70104552 70104707 -49640191 - L1MCa LINE L1 -5342 703 553 965 247 58 80 chr13 70104903 70105353 -49639545 - L1MCa LINE L1 -5596 449 10 298 342 45 65 chr13 70105582 70106000 -49638898 + LTR16B LTR ERVL 38 447 -17 30 27 0 0 chr13 70106289 70106326 -49638572 + AT_rich Low_complexity Low_complexity 1 37 0 22 80 0 0 chr13 70106757 70106807 -49638091 + AT_rich Low_complexity Low_complexity 1 50 0 196 297 180 31 chr13 70107916 70108044 -49636854 - L2 LINE L2 0 3313 3167 291 350 90 53 chr13 70108299 70108867 -49636031 - L2 LINE L2 -547 2767 2179 1174 176 52 28 chr13 70109009 70109076 -49635822 + AluSx SINE Alu 56 120 -192 2248 105 0 0 chr13 70109076 70109372 -49635526 + AluSc SINE Alu 1 296 -13 1174 176 52 28 chr13 70109372 70109554 -49635344 + AluSx SINE Alu 120 311 -1 23 54 0 0 chr13 70109592 70109629 -49635269 + AT_rich Low_complexity Low_complexity 1 37 0 670 195 8 0 chr13 70110432 70110555 -49634343 + FLAM_C SINE Alu 1 124 -19 213 203 68 0 chr13 70110612 70110671 -49634227 + (TTATA)n Simple_repeat Simple_repeat 2 64 0 1129 237 47 122 chr13 70110679 70110929 -49633969 + MER63D DNA MER1_type 58 325 -736 1703 158 34 67 chr13 70110929 70111315 -49633583 - THE1C LTR MaLR -2 373 1 1129 237 47 122 chr13 70111315 70111898 -49633000 + MER63D DNA MER1_type 325 959 -102 3840 216 40 39 chr13 70111912 70114387 -49630511 - L1MB3 LINE L1 -3 6416 3746 948 198 96 0 chr13 70114391 70114588 -49630310 - L1MB3 LINE L1 -6145 239 24 353 284 78 0 chr13 70114594 70114696 -49630202 + MER63D DNA MER1_type 951 1060 -1 309 384 56 11 chr13 70115573 70115857 -49629041 - MLT1K LTR MaLR -113 475 179 1119 271 78 38 chr13 70117113 70117174 -49627724 - L1MDb LINE L1 -2395 4011 3954 1669 213 58 36 chr13 70117174 70117620 -49627278 + MSTB2 LTR MaLR 2 457 0 1119 271 78 38 chr13 70117620 70118725 -49626173 - L1MDb LINE L1 -2452 3954 2699 1571 234 79 69 chr13 70118738 70119098 -49625800 - L1MDb LINE L1 -3843 2563 2208 1295 220 7 0 chr13 70119098 70119375 -49625523 - L1PB4 LINE L1 -13 6143 5865 1571 234 79 69 chr13 70119375 70119844 -49625054 - L1MDb LINE L1 -4198 2208 1730 308 306 24 38 chr13 70119841 70120111 -49624787 - L1MDb LINE L1 -4943 1463 1205 * 1536 234 11 31 chr13 70120214 70120666 -49624232 - L1MDb LINE L1 -5223 1186 744 917 319 87 64 chr13 70120682 70120888 -49624010 - L1MDb LINE L1 -5820 589 389 2438 74 0 3 chr13 70120888 70121200 -49623698 - AluY SINE Alu 0 311 1 917 319 87 64 chr13 70121200 70121555 -49623343 - L1MDb LINE L1 -6020 389 15 23 0 0 0 chr13 70121898 70121921 -49622977 + AT_rich Low_complexity Low_complexity 1 23 0 692 169 42 42 chr13 70123668 70123834 -49621064 + L1MA9 LINE L1 6136 6301 -11 628 333 8 24 chr13 70124108 70124357 -49620541 - MIR SINE MIR -17 245 1 251 265 0 0 chr13 70124918 70124986 -49619912 - LTR65 LTR ERV1 -597 72 5 447 310 95 58 chr13 70125853 70126402 -49618496 + L1ME LINE L1 336 904 -5468 186 133 0 0 chr13 70126448 70126478 -49618420 + (CA)n Simple_repeat Simple_repeat 2 31 0 985 237 54 35 chr13 70126505 70126563 -49618335 + L1ME LINE L1 2272 2327 -4055 231 36 0 0 chr13 70126563 70126591 -49618307 + (CA)n Simple_repeat Simple_repeat 1 28 0 985 237 54 35 chr13 70126591 70127006 -49617892 + L1ME LINE L1 2327 2753 -3629 554 324 64 37 chr13 70127005 70127675 -49617223 + L1MEc LINE L1 1217 1904 -4492 * 641 291 14 0 chr13 70127822 70128045 -49616853 + L1MEc LINE L1 2930 3155 -3060 407 299 70 7 chr13 70128043 70128341 -49616557 + L1MEc LINE L1 3526 3842 -2373 * 197 176 35 12 chr13 70128428 70128513 -49616385 + (TA)n Simple_repeat Simple_repeat 2 88 0 1528 213 70 0 chr13 70128523 70128851 -49616047 + MLT1A1 LTR MaLR 13 363 -2 285 29 0 0 chr13 70128856 70128890 -49616008 + (CA)n Simple_repeat Simple_repeat 2 35 0 695 265 108 54 chr13 70128892 70129262 -49615636 + L1MEc LINE L1 3857 4246 -1969 272 349 48 0 chr13 70129318 70129484 -49615414 - L1MEc LINE L1 -5992 404 231 213 197 0 0 chr13 70129516 70129577 -49615321 + (CATA)n Simple_repeat Simple_repeat 1 61 0 271 234 52 104 chr13 70129590 70129744 -49615154 - L1MEc LINE L1 -6216 180 35 2396 159 82 82 chr13 70130424 70131115 -49613783 + LTR8 LTR ERV1 1 691 0 2162 76 21 0 chr13 70131306 70131597 -49613301 + AluSg SINE Alu 1 297 -13 24 100 0 0 chr13 70131962 70132042 -49612856 + AT_rich Low_complexity Low_complexity 1 80 0 26 50 0 0 chr13 70132376 70132416 -49612482 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr13 70133509 70133534 -49611364 + AT_rich Low_complexity Low_complexity 1 25 0 25 90 0 0 chr13 70133743 70133810 -49611088 + AT_rich Low_complexity Low_complexity 1 67 0 28 61 0 0 chr13 70133871 70133920 -49610978 + AT_rich Low_complexity Low_complexity 1 49 0 348 250 148 62 chr13 70133971 70134027 -49610871 + MER5A DNA MER1_type 51 101 -88 2208 81 3 34 chr13 70134027 70134348 -49610550 - AluSp SINE Alu -1 312 2 348 250 148 62 chr13 70134348 70134385 -49610513 + MER5A DNA MER1_type 101 133 -56 2200 173 50 5 chr13 70134385 70134825 -49610073 + LOR1b LTR ERV1 2 461 0 348 250 148 62 chr13 70134825 70134858 -49610040 + MER5A DNA MER1_type 133 189 0 543 241 8 23 chr13 70136722 70136855 -49608043 - MLT1C LTR MaLR -2 465 335 323 198 181 9 chr13 70136965 70137081 -49607817 - MLT1C LTR MaLR -313 192 57 1299 231 17 10 chr13 70137509 70137807 -49607091 - AluJo SINE Alu -11 301 2 27 0 0 0 chr13 70138186 70138213 -49606685 + AT_rich Low_complexity Low_complexity 1 27 0 294 263 13 23 chr13 70138952 70139053 -49605845 + MER4-int LTR ERV1 3735 4408 -2190 756 201 10 78 chr13 70139283 70139592 -49605306 + MER4-int LTR ERV1 3734 4021 -2577 * 1168 240 130 47 chr13 70139590 70140282 -49604616 + MER4-int LTR ERV1 3077 3479 -1457 2229 71 0 0 chr13 70140282 70140577 -49604321 - AluY SINE Alu -16 295 1 1168 240 130 47 chr13 70140577 70140604 -49604294 + MER4-int LTR ERV1 3479 3502 -1434 279 122 0 0 chr13 70142007 70142056 -49602842 + (TG)n Simple_repeat Simple_repeat 2 50 0 182 250 0 0 chr13 70142077 70142121 -49602777 + L2 LINE L2 1916 1959 -1355 23 0 0 0 chr13 70142526 70142549 -49602349 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 70143814 70143835 -49601063 + AT_rich Low_complexity Low_complexity 1 21 0 572 296 91 93 chr13 70145215 70145655 -49599243 - MLT1H LTR MaLR 0 549 111 255 346 63 35 chr13 70146174 70146428 -49598470 + L2 LINE L2 1237 1497 -1817 5976 81 41 0 chr13 70146497 70146801 -49598097 - L1PA8A LINE L1 -28 6103 5813 198 0 0 0 chr13 70146801 70146823 -49598075 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 396 0 0 0 chr13 70146822 70146866 -49598032 + (TA)n Simple_repeat Simple_repeat 1 44 0 5976 81 41 0 chr13 70146823 70147534 -49597364 - L1PA8A LINE L1 -318 5813 5099 1428 339 78 59 chr13 70147539 70148883 -49596015 + L2 LINE L2 1521 2890 -424 223 357 0 0 chr13 70149029 70149113 -49595785 - L2 LINE L2 -559 2755 2672 2216 276 59 37 chr13 70149718 70150535 -49594363 + L1M3e LINE L1 1354 2151 -4955 1349 278 34 5 chr13 70150535 70150920 -49593978 + MSTD LTR MaLR 1 396 0 2216 276 59 37 chr13 70150920 70152413 -49592485 + L1M3e LINE L1 2151 3393 -3713 1857 216 21 28 chr13 70152415 70152841 -49592057 + MSTC LTR MaLR 4 426 -2 401 285 6 0 chr13 70152852 70153017 -49591881 + (TA)n Simple_repeat Simple_repeat 1 166 0 398 88 15 0 chr13 70153060 70153128 -49591770 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1457 292 21 16 chr13 70153133 70153712 -49591186 + L1M3e LINE L1 3419 4000 -3106 699 199 183 46 chr13 70153707 70154031 -49590867 + L1MA7 LINE L1 5953 6302 -10 * 2779 222 29 50 chr13 70154050 70155028 -49589870 + MER65-int LTR ERV1 1647 2494 -2377 1566 82 0 10 chr13 70155118 70155326 -49589572 - AluY SINE Alu 0 311 106 802 154 0 0 chr13 70155575 70155692 -49589206 + FLAM_C SINE Alu 10 126 -17 217 228 41 24 chr13 70155853 70155976 -49588922 + (TATAA)n Simple_repeat Simple_repeat 4 128 0 199 332 153 63 chr13 70156151 70156374 -49588524 + L2 LINE L2 586 828 -2486 208 376 61 25 chr13 70157166 70157363 -49587535 + L2 LINE L2 2865 3068 -245 2096 78 21 0 chr13 70157409 70157692 -49587206 + AluY SINE Alu 1 289 -22 652 267 93 41 chr13 70159378 70159962 -49584936 + L1ME LINE L1 500 1158 -5018 323 270 33 116 chr13 70160105 70160320 -49584578 + L1M3e LINE L1 4831 5027 -2079 8581 95 4 24 chr13 70160344 70160725 -49584173 - L1PA7 LINE L1 -1 6153 5766 1987 141 10 0 chr13 70160725 70161024 -49583874 - AluSp SINE Alu -11 302 1 8581 95 4 24 chr13 70161024 70162712 -49582186 - L1PA7 LINE L1 -388 5766 4119 231 149 0 0 chr13 70162712 70162759 -49582139 - L1PA7 LINE L1 -2263 3883 3837 * 10521 114 6 4 chr13 70162758 70164367 -49580531 + L1PA7 LINE L1 2208 3819 -2327 21 0 0 0 chr13 70165278 70165299 -49579599 + AT_rich Low_complexity Low_complexity 1 21 0 244 62 21 21 chr13 70165444 70165492 -49579406 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 197 296 23 45 chr13 70166649 70166737 -49578161 + L2 LINE L2 3186 3271 -1 203 255 0 20 chr13 70166760 70166811 -49578087 + GA-rich Low_complexity Low_complexity 3 52 0 26 0 0 0 chr13 70168447 70168473 -49576425 + AT_rich Low_complexity Low_complexity 1 26 0 3357 147 35 64 chr13 70168579 70169413 -49575485 + LTR1 LTR ERV1 13 785 0 2255 109 0 25 chr13 70170007 70170327 -49574571 - AluSx SINE Alu 0 312 1 11809 143 125 6 chr13 70170805 70173064 -49571834 - L1PBa LINE L1 -4335 2528 2 1941 179 44 0 chr13 70173073 70173436 -49571462 + MER57A LTR ERV1 25 403 0 357 284 71 7 chr13 70173581 70173722 -49571176 - LTR65 LTR ERV1 -6 663 514 405 279 57 32 chr13 70173897 70174055 -49570843 - LTR65 LTR ERV1 -506 163 2 500 264 0 0 chr13 70174590 70174711 -49570187 - MER69 DNA AcHobo -1096 130 10 6250 211 158 33 chr13 70175052 70176612 -49568286 + MER52A LTR ERV1 1 1755 0 1192 244 57 79 chr13 70177377 70177956 -49566942 - MER31-int LTR ERV1 -1200 3736 3171 493 170 21 0 chr13 70178247 70178341 -49566557 + L1MB1 LINE L1 6072 6167 -1 1312 209 13 39 chr13 70178690 70178997 -49565901 - MER101B LTR ERV1 -271 299 1 363 257 0 73 chr13 70179105 70179241 -49565657 - MER31-int LTR ERV1 -1887 3049 2924 268 321 36 15 chr13 70179672 70179809 -49565089 - MER31-int LTR ERV1 -2340 2596 2457 1329 174 0 0 chr13 70179882 70180094 -49564804 - Tigger3(Golem) DNA MER2_type 0 3038 2827 313 187 22 11 chr13 70180212 70180303 -49564595 - MER31-int LTR ERV1 -2629 2307 2216 634 274 40 5 chr13 70180404 70180627 -49564271 - MER31-int LTR ERV1 -3660 1276 1046 243 0 0 0 chr13 70180713 70180740 -49564158 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr13 70180851 70180872 -49564026 + AT_rich Low_complexity Low_complexity 1 21 0 285 159 63 16 chr13 70181103 70181166 -49563732 - MER92C LTR ERV1 -2 552 487 231 234 0 0 chr13 70181425 70181472 -49563426 - MER92B LTR ERV1 -589 47 1 695 309 112 20 chr13 70181472 70181983 -49562915 + L1ME2 LINE L1 5563 6120 -44 2117 113 0 26 chr13 70181986 70182295 -49562603 - AluSx SINE Alu -11 301 1 29 0 0 0 chr13 70182490 70182519 -49562379 + AT_rich Low_complexity Low_complexity 1 29 0 313 331 155 22 chr13 70182547 70182728 -49562170 + MIR SINE MIR 9 213 -49 360 172 26 5 chr13 70182837 70182940 -49561958 - L1MC4 LINE L1 0 8042 7696 1783 131 137 14 chr13 70183312 70183663 -49561235 - L1PA16 LINE L1 0 6166 5773 * 3141 179 48 22 chr13 70183647 70184803 -49560095 + L1PA16 LINE L1 4603 5784 -382 24 0 0 0 chr13 70186940 70186964 -49557934 + AT_rich Low_complexity Low_complexity 1 24 0 2135 74 21 0 chr13 70188168 70188451 -49556447 + AluY SINE Alu 1 289 -22 654 267 93 41 chr13 70190137 70190721 -49554177 + L1ME LINE L1 500 1158 -5018 323 270 33 116 chr13 70190864 70191079 -49553819 + L1M4 LINE L1 3871 4067 -2079 6644 78 8 4 chr13 70191103 70192862 -49552036 - L1PA7 LINE L1 -1 6153 4390 13132 188 17 12 chr13 70193261 70193313 -49551585 + L1PB1 LINE L1 2205 2255 -3896 2001 108 201 11 chr13 70193313 70193691 -49551207 + LTR7 LTR ERV1 1 450 0 13132 188 17 12 chr13 70193691 70194207 -49550691 + L1PB1 LINE L1 2255 2767 -3384 1804 159 11 0 chr13 70194207 70194490 -49550408 + AluSg SINE Alu 10 295 -15 13132 188 17 12 chr13 70194490 70197841 -49547057 + L1PB1 LINE L1 2767 6151 0 219 190 0 0 chr13 70197848 70197906 -49546992 + (TA)n Simple_repeat Simple_repeat 2 59 0 280 79 0 0 chr13 70197906 70197944 -49546954 - MER57A LTR ERV1 -363 40 3 872 194 117 93 chr13 70199331 70199754 -49545144 + MER67D LTR ERV1 135 514 0 583 271 0 0 chr13 70200761 70200890 -49544008 - MER94 DNA DNA -5 129 1 2088 112 7 3 chr13 70201001 70201296 -49543602 - AluSg SINE Alu -14 296 1 8723 57 6 1 chr13 70202234 70204133 -49540765 + L1PA5 LINE L1 4247 6154 0 214 153 34 0 chr13 70204296 70204355 -49540543 + (TA)n Simple_repeat Simple_repeat 2 62 0 538 268 89 87 chr13 70204403 70204895 -49540003 + L2 LINE L2 2043 2535 -779 246 354 106 35 chr13 70205042 70205418 -49539480 + L2 LINE L2 2822 3224 -89 21 36 0 0 chr13 70206629 70206657 -49538241 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 70206682 70206705 -49538193 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr13 70207009 70207044 -49537854 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 70207493 70207521 -49537377 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr13 70208089 70208132 -49536766 + AT_rich Low_complexity Low_complexity 1 43 0 339 254 25 25 chr13 70208378 70208496 -49536402 + MER103 DNA DNA 41 158 -8 226 216 68 45 chr13 70208866 70208954 -49535944 - MIR SINE MIR 0 262 173 6239 230 28 22 chr13 70209268 70209993 -49534905 - L1MB2 LINE L1 -26 5969 5250 2192 192 29 5 chr13 70209993 70210409 -49534489 + MSTB LTR MaLR 1 426 0 6239 230 28 22 chr13 70210409 70212193 -49532705 - L1MB2 LINE L1 -745 5250 3445 392 337 47 77 chr13 70212302 70212706 -49532192 - L1MB2 LINE L1 -5498 393 2 1895 157 20 0 chr13 70212738 70213032 -49531866 + AluSx SINE Alu 6 305 -7 198 347 105 0 chr13 70213201 70213296 -49531602 - L2 LINE L2 -49 3264 3160 1000 260 102 12 chr13 70213299 70213641 -49531257 + MLT1F LTR MaLR 168 540 -2 1082 222 81 11 chr13 70214246 70214530 -49530368 + MER82 DNA MER2_type 2 305 -348 1449 189 10 30 chr13 70214536 70214833 -49530065 - AluSx SINE Alu -1 311 21 1682 222 14 25 chr13 70214833 70215194 -49529704 + MER82 DNA MER2_type 297 653 0 28 61 0 0 chr13 70215414 70215463 -49529435 + AT_rich Low_complexity Low_complexity 1 49 0 455 290 55 111 chr13 70218748 70219127 -49525771 - L2 LINE L2 -14 3299 2942 333 206 0 33 chr13 70219127 70219219 -49525679 + L1MA10 LINE L1 6242 6330 -4 24 0 0 0 chr13 70221389 70221413 -49523485 + AT_rich Low_complexity Low_complexity 1 24 0 265 308 111 34 chr13 70221842 70221959 -49522939 + L2 LINE L2 3172 3297 -16 218 304 143 27 chr13 70222375 70222487 -49522411 + L2 LINE L2 3183 3307 -6 2795 164 91 21 chr13 70222744 70223253 -49521645 - MER7C DNA MER2_type -2427 601 48 7825 138 21 7 chr13 70223253 70224533 -49520365 - HSMAR2 DNA Mariner -1 1301 4 2795 164 91 21 chr13 70224533 70224585 -49520313 - MER7C DNA MER2_type -2980 48 1 23 33 0 0 chr13 70224801 70224831 -49520067 + AT_rich Low_complexity Low_complexity 1 30 0 232 208 21 0 chr13 70225722 70225770 -49519128 - MIR SINE MIR -10 252 204 2150 95 26 16 chr13 70226191 70226495 -49518403 - AluSc SINE Alu -2 307 1 277 319 42 42 chr13 70226707 70226826 -49518072 + MIR3 SINE MIR 65 183 -25 248 298 107 0 chr13 70228521 70228642 -49516256 - MIR SINE MIR 0 262 129 3998 42 57 30 chr13 70229618 70229888 -49515010 - LTR6B LTR ERV1 0 558 297 2826 3 0 0 chr13 70229888 70230197 -49514701 + AluYa5 SINE Alu 1 309 -2 3998 42 57 30 chr13 70230197 70230469 -49514429 - LTR6B LTR ERV1 -261 297 1 632 378 117 20 chr13 70231513 70232319 -49512579 + L2 LINE L2 298 1181 -2133 363 356 65 23 chr13 70232349 70232565 -49512333 - MIR SINE MIR -30 232 8 705 230 19 30 chr13 70232979 70233304 -49511594 - L1ME LINE L1 -685 5479 5156 22 0 0 0 chr13 70233382 70233404 -49511494 + AT_rich Low_complexity Low_complexity 1 22 0 190 355 0 0 chr13 70233477 70233553 -49511345 + MIR SINE MIR 79 154 -108 6929 91 5 3 chr13 70233921 70235693 -49509205 - L1PA8 LINE L1 -7 6165 4390 244 157 137 0 chr13 70236446 70236497 -49508401 - MER63 DNA MER1_type -369 693 10 2183 114 3 3 chr13 70236623 70236920 -49507978 - AluSx SINE Alu -15 297 1 32 57 0 0 chr13 70237037 70237090 -49507808 + AT_rich Low_complexity Low_complexity 1 53 0 2207 117 0 0 chr13 70237100 70237398 -49507500 + AluSx SINE Alu 4 301 -11 21 57 0 0 chr13 70237748 70237783 -49507115 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr13 70238794 70238828 -49506070 + AT_rich Low_complexity Low_complexity 1 34 0 1872 179 31 31 chr13 70239737 70240127 -49504771 - MLT1B LTR MaLR 0 390 1 24 67 0 0 chr13 70240226 70240271 -49504627 + AT_rich Low_complexity Low_complexity 1 45 0 194 253 48 36 chr13 70241122 70241205 -49503693 - MIR SINE MIR -61 201 118 36 0 0 0 chr13 70241694 70241730 -49503168 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 70241867 70241889 -49503009 + AT_rich Low_complexity Low_complexity 1 22 0 2173 54 51 27 chr13 70242977 70243272 -49501626 + AluY SINE Alu 1 302 -9 315 71 0 0 chr13 70243409 70243451 -49501447 + (TA)n Simple_repeat Simple_repeat 1 42 0 286 329 81 18 chr13 70243613 70243835 -49501063 - L1MC/D LINE L1 -2180 5628 5393 503 320 31 51 chr13 70243877 70244133 -49500765 + MIR SINE MIR 1 251 -11 333 197 0 0 chr13 70244137 70244208 -49500690 + (TA)n Simple_repeat Simple_repeat 2 72 0 332 290 45 62 chr13 70244208 70244378 -49500520 - L1MC/D LINE L1 -1439 4707 4540 2168 128 7 0 chr13 70244378 70244684 -49500214 + AluSc SINE Alu 1 308 -1 332 290 45 62 chr13 70244684 70244737 -49500161 - L1MC/D LINE L1 -1606 4540 4488 41309 66 5 2 chr13 70245477 70251608 -49493290 - L1PA5 LINE L1 -3 6151 1 28454 124 59 25 chr13 70251751 70253198 -49491700 + LOR1b-int LTR ERV1 200 1596 -6524 1759 138 78 0 chr13 70253198 70253467 -49491431 + AluSg SINE Alu 3 292 -18 28454 124 59 25 chr13 70253467 70254616 -49490282 + LOR1b-int LTR ERV1 1596 2705 -5415 186 43 0 0 chr13 70254616 70254639 -49490259 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 28454 124 59 25 chr13 70254639 70257191 -49487707 + LOR1b-int LTR ERV1 2705 5524 -2596 1964 95 0 4 chr13 70257181 70257445 -49487453 + LOR1b-int LTR ERV1 5801 6063 -2057 * 396 103 0 17 chr13 70257446 70257504 -49487394 + LOR1b-int LTR ERV1 8031 8087 -33 2327 179 24 11 chr13 70257614 70258067 -49486831 + LOR1b LTR ERV1 3 461 0 332 319 60 33 chr13 70258413 70258595 -49486303 - L1MC/D LINE L1 -2301 3845 3659 5074 189 24 5 chr13 70258681 70259794 -49485104 + L1MA8 LINE L1 3730 4863 -1283 270 206 0 0 chr13 70259938 70260001 -49484897 + (TA)n Simple_repeat Simple_repeat 1 63 0 5073 169 21 12 chr13 70260020 70261027 -49483871 + L1MA8 LINE L1 5266 6281 -10 26 0 0 0 chr13 70261027 70261053 -49483845 + AT_rich Low_complexity Low_complexity 1 26 0 551 138 0 69 chr13 70261886 70262002 -49482896 - L1MA7 LINE L1 -4 6287 6180 50 51 0 0 chr13 70263152 70263230 -49481668 + AT_rich Low_complexity Low_complexity 1 78 0 2035 214 71 16 chr13 70264312 70264761 -49480137 + MER54A LTR ERVL 18 491 -410 1153 204 9 4 chr13 70264765 70264991 -49479907 + MER73 LTR ERVL 418 644 0 2263 108 3 0 chr13 70265275 70265582 -49479316 + AluSp SINE Alu 1 308 -5 1571 189 24 7 chr13 70265841 70266138 -49478760 + AluJo SINE Alu 3 304 -8 2567 55 3 0 chr13 70266720 70267028 -49477870 - AluY SINE Alu -2 309 1 22 0 0 0 chr13 70268116 70268138 -49476760 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr13 70268275 70268311 -49476587 + AT_rich Low_complexity Low_complexity 1 36 0 194 253 48 36 chr13 70268800 70268883 -49476015 + MIR SINE MIR 118 201 -61 24 67 0 0 chr13 70269734 70269779 -49475119 + AT_rich Low_complexity Low_complexity 1 45 0 1872 179 31 31 chr13 70269878 70270268 -49474630 + MLT1B LTR MaLR 1 390 0 27 29 0 0 chr13 70271177 70271211 -49473687 + AT_rich Low_complexity Low_complexity 1 34 0 309 343 44 15 chr13 70272655 70272792 -49472106 + MIR3 SINE MIR 1 141 -67 2884 194 28 8 chr13 70273085 70273700 -49471198 + L1MB7 LINE L1 5345 5971 -213 838 189 48 48 chr13 70274317 70274523 -49470375 - MER63A DNA MER1_type 0 210 5 2691 103 49 9 chr13 70274672 70275099 -49469799 - MLT2A1 LTR ERVL 0 444 1 42148 83 16 3 chr13 70275099 70275177 -49469721 - HERVL-A1-A1 LTR ERVL 0 5654 5578 1963 103 44 4 chr13 70275177 70275484 -49469414 + AluSg SINE Alu 1 318 0 42148 83 16 3 chr13 70275484 70280988 -49463910 - HERVL-A1-A1 LTR ERVL -76 5578 1 2770 88 69 7 chr13 70280988 70281030 -49463868 - MLT2A1 LTR ERVL 0 444 406 567 78 0 0 chr13 70281030 70281107 -49463791 + (TA)n Simple_repeat Simple_repeat 1 77 0 2770 88 69 7 chr13 70281107 70281482 -49463416 - MLT2A1 LTR ERVL -38 406 1 442 332 5 32 chr13 70281612 70281802 -49463096 - MIR SINE MIR -6 256 72 62 26 0 0 chr13 70281871 70281947 -49462951 + AT_rich Low_complexity Low_complexity 1 76 0 1987 161 3 3 chr13 70283066 70283376 -49461522 + AluSx SINE Alu 3 312 0 23 0 0 0 chr13 70284173 70284196 -49460702 + AT_rich Low_complexity Low_complexity 1 23 0 2064 129 37 83 chr13 70284846 70285279 -49459619 - MER4A LTR ERV1 0 664 252 2316 118 8 8 chr13 70285298 70285653 -49459245 + THE1A LTR MaLR 1 355 0 10800 108 21 0 chr13 70285653 70287201 -49457697 + THE1A-int LTR MaLR 1 1580 0 2101 127 32 9 chr13 70287201 70287548 -49457350 + THE1A LTR MaLR 1 355 0 964 112 68 12 chr13 70287548 70287709 -49457189 - MER4A LTR ERV1 -494 170 1 909 239 20 0 chr13 70287744 70287941 -49456957 - MLT1C LTR MaLR 0 467 267 3942 152 18 20 chr13 70287944 70288650 -49456248 - MER50 LTR ERV1 -20 714 10 661 217 36 59 chr13 70288667 70288888 -49456010 - MLT1C LTR MaLR -164 226 11 475 73 0 0 chr13 70288940 70289008 -49455890 + Alu SINE Alu 1 68 -242 21 36 0 0 chr13 70289827 70289855 -49455043 + AT_rich Low_complexity Low_complexity 1 28 0 305 119 0 0 chr13 70290399 70290441 -49454457 - L1P5 LINE L1 -593 5558 5517 22 56 0 0 chr13 70290499 70290535 -49454363 + AT_rich Low_complexity Low_complexity 1 36 0 3000 133 38 2 chr13 70290538 70291188 -49453710 - L1P5 LINE L1 -663 5505 4838 4426 87 11 3 chr13 70291189 70291808 -49453090 + L1PA10 LINE L1 5545 6168 0 647 324 184 10 chr13 70291809 70292319 -49452579 - LTR50 LTR ERVL -115 680 82 947 90 0 0 chr13 70292453 70292575 -49452323 - AluY SINE Alu -17 294 173 23 33 0 0 chr13 70292982 70293012 -49451886 + AT_rich Low_complexity Low_complexity 1 30 0 242 308 92 30 chr13 70293038 70293343 -49451555 + L1MEd LINE L1 603 926 -5193 476 293 102 59 chr13 70293858 70294319 -49450579 + MLT1J LTR MaLR 23 503 -8 816 48 145 0 chr13 70294757 70294881 -49450017 - AluY SINE Alu -2 309 168 186 353 33 25 chr13 70295123 70295245 -49449653 + MIR SINE MIR 34 156 -106 522 194 65 0 chr13 70295433 70295541 -49449357 + L1PB4 LINE L1 6039 6153 -3 193 359 78 8 chr13 70296705 70296833 -49448065 - MIR SINE MIR -55 153 17 381 75 0 0 chr13 70297230 70297283 -49447615 + (CA)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr13 70298319 70298349 -49446549 + AT_rich Low_complexity Low_complexity 1 30 0 217 233 0 0 chr13 70299606 70299649 -49445249 + (CATA)n Simple_repeat Simple_repeat 2 44 0 39 22 0 0 chr13 70299864 70299910 -49444988 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chr13 70301218 70301256 -49443642 + AT_rich Low_complexity Low_complexity 1 38 0 223 372 35 18 chr13 70301283 70301396 -49443502 - L2 LINE L2 -197 3075 2961 2151 117 0 34 chr13 70303874 70304198 -49440700 - AluSq SINE Alu 0 313 1 2416 183 16 5 chr13 70305709 70306141 -49438757 + Tigger1 DNA MER2_type 4 440 -1978 1545 152 73 146 chr13 70306147 70306614 -49438284 - LTR23 LTR ERV1 0 437 5 11099 146 35 16 chr13 70306621 70308551 -49436347 + Tigger1 DNA MER2_type 452 2418 0 294 339 242 23 chr13 70308696 70308956 -49435942 - L2 LINE L2 -54 3259 2943 240 254 0 0 chr13 70309023 70309078 -49435820 - L2 LINE L2 -561 2753 2699 205 250 62 0 chr13 70309131 70309179 -49435719 - L2 LINE L2 -5 3267 3217 2084 107 4 4 chr13 70309426 70309739 -49435159 - AluSx SINE Alu 0 316 4 299 330 82 51 chr13 70309940 70310488 -49434410 - L2 LINE L2 -610 2704 2140 252 0 0 0 chr13 70310548 70310576 -49434322 + (GA)n Simple_repeat Simple_repeat 1 28 0 279 369 57 23 chr13 70311295 70311471 -49433427 + MIR3 SINE MIR 6 187 -21 182 298 88 0 chr13 70312620 70312677 -49432221 - L2 LINE L2 -13 3259 3198 2166 78 0 0 chr13 70312806 70313119 -49431779 - AluSx SINE Alu 0 313 1 31 0 0 0 chr13 70313121 70313152 -49431746 + AT_rich Low_complexity Low_complexity 1 31 0 30 45 0 0 chr13 70314161 70314205 -49430693 + AT_rich Low_complexity Low_complexity 1 44 0 216 146 52 52 chr13 70314464 70314560 -49430338 + (TATAA)n Simple_repeat Simple_repeat 5 100 0 240 35 0 0 chr13 70315543 70315572 -49429326 + (TG)n Simple_repeat Simple_repeat 2 30 0 1900 244 61 75 chr13 70315837 70316198 -49428700 - L1MD3 LINE L1 -736 7259 6894 2059 134 0 10 chr13 70316198 70316511 -49428387 - AluSx SINE Alu 0 312 3 1900 244 61 75 chr13 70316511 70316620 -49428278 - L1MD3 LINE L1 -1101 6894 6785 279 0 0 0 chr13 70316620 70316651 -49428247 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1900 244 61 75 chr13 70316651 70317004 -49427894 - L1MD3 LINE L1 -1210 6785 6447 180 0 0 0 chr13 70317392 70317412 -49427486 + (A)n Simple_repeat Simple_repeat 1 20 0 252 316 96 22 chr13 70317970 70318106 -49426792 + MIR SINE MIR 102 247 -15 22 35 0 0 chr13 70318106 70318135 -49426763 + AT_rich Low_complexity Low_complexity 1 29 0 527 226 176 73 chr13 70318140 70318300 -49426598 + MLT1D LTR MaLR 281 468 -37 1727 162 23 13 chr13 70318300 70318603 -49426295 - AluSx SINE Alu -5 307 2 527 226 176 73 chr13 70318603 70318646 -49426252 + MLT1D LTR MaLR 468 505 0 1413 208 13 0 chr13 70319308 70319606 -49425292 - L1 LINE L1 -1095 5051 4750 4601 97 29 1 chr13 70319606 70319934 -49424964 + L1PB1 LINE L1 5448 5765 -386 240 35 0 0 chr13 70319934 70319963 -49424935 + (CA)n Simple_repeat Simple_repeat 1 29 0 4601 97 29 1 chr13 70319963 70320315 -49424583 + L1PB1 LINE L1 5765 6148 -3 1265 179 46 28 chr13 70320347 70320632 -49424266 + AluJo SINE Alu 1 290 -22 265 369 19 10 chr13 70320677 70320780 -49424118 - L2 LINE L2 -546 2768 2665 947 121 0 14 chr13 70322043 70322184 -49422714 + AluSq/x SINE Alu 1 139 -173 1368 101 0 5 chr13 70322265 70322454 -49422444 + AluSg/x SINE Alu 112 299 -13 264 185 0 0 chr13 70322929 70322983 -49421915 + (TG)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr13 70322983 70323004 -49421894 + AT_rich Low_complexity Low_complexity 1 21 0 1600 143 78 24 chr13 70323128 70323421 -49421477 - AluSx SINE Alu -3 309 1 2175 96 0 30 chr13 70324627 70324929 -49419969 - AluSp SINE Alu -18 295 3 556 305 72 26 chr13 70324958 70325152 -49419746 - L1ME3 LINE L1 -298 5864 5680 1920 128 144 11 chr13 70325152 70325526 -49419372 - MSTA LTR MaLR 0 428 5 556 305 72 26 chr13 70325526 70325708 -49419190 - L1ME3 LINE L1 -482 5680 5471 2452 60 0 0 chr13 70325950 70326248 -49418650 - AluY SINE Alu -11 300 3 241 324 50 22 chr13 70326627 70326809 -49418089 - L1 LINE L1 -1375 4771 4585 331 340 63 5 chr13 70326850 70327041 -49417857 - L1 LINE L1 -1712 4434 4233 880 211 39 148 chr13 70327082 70327316 -49417582 + MLT1B LTR MaLR 3 170 -220 681 101 0 0 chr13 70327316 70327415 -49417483 + (TA)n Simple_repeat Simple_repeat 2 100 0 880 211 39 148 chr13 70327415 70327612 -49417286 + MLT1B LTR MaLR 170 387 -3 345 256 22 101 chr13 70327832 70327874 -49417024 - L1 LINE L1 -3520 2626 2582 1947 200 42 12 chr13 70327874 70328284 -49416614 + MSTB LTR MaLR 5 426 0 345 256 22 101 chr13 70328284 70328468 -49416430 - L1 LINE L1 -3564 2582 2418 5974 85 8 4 chr13 70328572 70329406 -49415492 + L1PA8A LINE L1 5266 6103 -28 2927 189 32 7 chr13 70329489 70330088 -49414810 + MER67C LTR ERV1 97 710 0 21 0 0 0 chr13 70330089 70330110 -49414788 + AT_rich Low_complexity Low_complexity 1 21 0 288 193 199 40 chr13 70330152 70330328 -49414570 - L1 LINE L1 -3796 2350 2147 1499 195 18 3 chr13 70330349 70330707 -49414191 - AluJo SINE Alu 0 363 2 242 293 28 28 chr13 70331278 70331384 -49413514 + L2 LINE L2 3192 3297 -16 474 202 32 8 chr13 70332155 70332279 -49412619 + MLT2B1 LTR ERVL 3 129 -391 4672 211 58 5 chr13 70332279 70332396 -49412502 + ERVL-C2 LTR ERVL 4643 4752 -1012 2286 143 42 39 chr13 70332396 70332829 -49412069 - MER61C LTR ERV1 0 434 1 4672 211 58 5 chr13 70332829 70333434 -49411464 + ERVL-C2 LTR ERVL 4752 5435 -329 1831 176 38 24 chr13 70333434 70333804 -49411094 + THE1C LTR MaLR 1 375 0 4672 211 58 5 chr13 70333804 70334073 -49410825 + ERVL-C2 LTR ERVL 5435 5688 -76 1057 254 45 45 chr13 70334124 70334588 -49410310 + MLT2C2 LTR ERVL 1 464 0 25 65 0 0 chr13 70334796 70334842 -49410056 + AT_rich Low_complexity Low_complexity 1 46 0 1934 140 7 7 chr13 70335168 70335475 -49409423 - AluSx SINE Alu -5 307 1 225 246 0 0 chr13 70335716 70335781 -49409117 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1176 171 44 0 chr13 70335783 70336011 -49408887 - Tigger5 DNA MER2_type 0 2323 2086 22 0 0 0 chr13 70336117 70336139 -49408759 + AT_rich Low_complexity Low_complexity 1 22 0 954 219 63 115 chr13 70337121 70337504 -49407394 + MLT1A1 LTR MaLR 1 363 -2 2692 185 91 9 chr13 70337506 70338057 -49406841 + MLT1A1-int LTR MaLR 1 596 -1139 2052 264 60 0 chr13 70338077 70338559 -49406339 + L1PA13 LINE L1 5 515 -6272 5720 131 33 0 chr13 70338562 70339570 -49405328 + L1PA15 LINE L1 5115 6152 -13 642 261 12 6 chr13 70339599 70339760 -49405138 + MLT1A1-int LTR MaLR 586 747 -988 * 1176 223 232 7 chr13 70339751 70340199 -49404699 + L1MA7 LINE L1 5736 6284 -7 1513 256 94 4 chr13 70340214 70340695 -49404203 + L1ME2 LINE L1 4762 5285 -861 514 274 23 47 chr13 70340693 70340908 -49403990 + L1MB7 LINE L1 5944 6153 -31 * 1789 246 64 52 chr13 70340910 70341500 -49403398 + MER77 LTR ERV1 1 597 -8 265 277 32 0 chr13 70341853 70341947 -49402951 + L1ME2 LINE L1 5395 5491 -671 * 924 243 61 3 chr13 70341942 70342238 -49402660 + L1ME2 LINE L1 5725 6037 -127 303 152 0 0 chr13 70342260 70342306 -49402592 - MLT2D LTR ERVL -367 47 2 2022 79 90 0 chr13 70342306 70342583 -49402315 + AluSq SINE Alu 1 302 -11 211 149 27 47 chr13 70342694 70342842 -49402056 + (TA)n Simple_repeat Simple_repeat 1 145 0 248 77 26 0 chr13 70342873 70342912 -49401986 + (TC)n Simple_repeat Simple_repeat 1 40 0 198 0 0 0 chr13 70342913 70342935 -49401963 + (TG)n Simple_repeat Simple_repeat 2 23 0 265 270 11 0 chr13 70342944 70343033 -49401865 + (TA)n Simple_repeat Simple_repeat 1 90 0 437 338 154 0 chr13 70343267 70343539 -49401359 - MER102b DNA MER1_type -22 319 6 315 0 0 0 chr13 70344123 70344158 -49400740 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr13 70345207 70345231 -49399667 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 70345285 70345313 -49399585 + AT_rich Low_complexity Low_complexity 1 28 0 258 314 0 0 chr13 70347152 70347222 -49397676 + L2 LINE L2 3244 3313 0 1796 151 14 3 chr13 70347744 70348035 -49396863 + AluSx SINE Alu 1 294 -18 247 323 55 31 chr13 70348036 70348163 -49396735 + MER68 LTR ERV1 263 392 -170 637 307 66 47 chr13 70348477 70349008 -49395890 + L1MEd LINE L1 696 1236 -4883 22 56 0 0 chr13 70349011 70349047 -49395851 + AT_rich Low_complexity Low_complexity 1 36 0 758 242 71 36 chr13 70349112 70349364 -49395534 - LTR40b LTR ERVL 0 462 202 285 314 83 25 chr13 70349582 70349786 -49395112 + L1M4 LINE L1 4615 4830 -1316 423 232 46 73 chr13 70349921 70350072 -49394826 - MIR SINE MIR 0 262 116 4599 183 54 6 chr13 70350297 70351808 -49393090 - L1MA8 LINE L1 -2 6289 4723 8731 197 37 11 chr13 70351810 70353792 -49391106 + L1MA8 LINE L1 2707 4740 -1406 21 0 0 0 chr13 70354364 70354385 -49390513 + AT_rich Low_complexity Low_complexity 1 21 0 2017 214 71 16 chr13 70355774 70356223 -49388675 + MER54A LTR ERVL 18 491 -410 1152 204 9 4 chr13 70356227 70356453 -49388445 + MER73 LTR ERVL 418 644 0 2261 101 3 0 chr13 70356736 70357043 -49387855 + AluSp SINE Alu 1 308 -5 1540 189 24 7 chr13 70357302 70357599 -49387299 + AluJo SINE Alu 3 304 -8 2480 56 3 0 chr13 70358178 70358480 -49386418 - AluY SINE Alu -8 303 1 697 289 126 33 chr13 70359957 70360386 -49384512 + LTR50 LTR ERVL 327 795 0 209 361 68 44 chr13 70361679 70361773 -49383125 + MIR SINE MIR 5 95 -167 1565 189 3 13 chr13 70361773 70362074 -49382824 - AluJo SINE Alu -4 308 11 209 361 68 44 chr13 70362074 70362231 -49382667 + MIR SINE MIR 95 262 0 194 341 85 39 chr13 70362423 70362552 -49382346 - L2 LINE L2 -4 3309 3175 262 331 18 0 chr13 70363013 70363104 -49381794 + MIR SINE MIR 61 160 -48 300 336 83 47 chr13 70363949 70364202 -49380696 + HAL1 LINE L1 1242 1503 -1004 353 230 133 100 chr13 70364435 70364705 -49380193 + LTR37B LTR ERV1 116 394 -74 35 24 0 0 chr13 70364719 70364761 -49380137 + AT_rich Low_complexity Low_complexity 1 42 0 1013 189 69 152 chr13 70366241 70366489 -49378409 - MLT1A2 LTR MaLR 0 374 172 1576 194 7 0 chr13 70366489 70366767 -49378131 - AluSx SINE Alu -32 280 1 1013 189 69 152 chr13 70366767 70366926 -49377972 - MLT1A2 LTR MaLR -202 172 1 506 298 160 33 chr13 70368145 70368544 -49376354 + MLT1J2 LTR MaLR 1 450 0 1534 198 50 59 chr13 70368761 70369200 -49375698 - MLT1C LTR MaLR -16 451 17 23 0 0 0 chr13 70369614 70369637 -49375261 + AT_rich Low_complexity Low_complexity 1 23 0 328 321 0 0 chr13 70369919 70370000 -49374898 - L2 LINE L2 -3 3310 3230 1697 252 107 2 chr13 70370448 70370964 -49373934 - MER92B LTR ERV1 -7 629 60 25 51 0 0 chr13 70371197 70371236 -49373662 + AT_rich Low_complexity Low_complexity 1 39 0 1592 232 93 45 chr13 70372217 70372774 -49372124 - L1ME2 LINE L1 -10 6154 5571 287 178 0 0 chr13 70372971 70373016 -49371882 + MER63 DNA MER1_type 716 760 -76 701 248 74 54 chr13 70373182 70373424 -49371474 - MIR SINE MIR -10 252 6 504 117 0 0 chr13 70373816 70373893 -49371005 + (TA)n Simple_repeat Simple_repeat 2 78 0 298 406 36 0 chr13 70374612 70374750 -49370148 + MIR SINE MIR 3 145 -117 248 329 14 0 chr13 70374879 70374949 -49369949 + L2 LINE L2 3239 3309 -4 629 294 17 0 chr13 70375955 70376132 -49368766 - MIR SINE MIR -72 190 11 1889 144 53 28 chr13 70377317 70377672 -49367226 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr13 70377913 70377943 -49366955 + AT_rich Low_complexity Low_complexity 1 30 0 1142 233 140 18 chr13 70378093 70378240 -49366658 - MER89 LTR ERV1 0 559 431 3864 179 48 24 chr13 70378240 70379046 -49365852 + LTR1B LTR ERV1 1 826 0 1142 233 140 18 chr13 70379046 70379241 -49365657 - MER89 LTR ERV1 -128 431 175 431 221 0 0 chr13 70379219 70379314 -49365584 - MER89 LTR ERV1 -461 98 4 * 340 312 64 0 chr13 70379415 70379524 -49365374 - L2 LINE L2 -4 3309 3194 180 0 0 0 chr13 70379787 70379807 -49365091 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2032 198 72 41 chr13 70379970 70380455 -49364443 - MLT1D LTR MaLR -5 500 1 4601 111 1 42 chr13 70380560 70380822 -49364076 + LTR8 LTR ERV1 3 274 -417 2114 99 0 26 chr13 70380822 70381124 -49363774 + AluY SINE Alu 1 294 -17 4601 111 1 42 chr13 70381124 70381327 -49363571 + LTR8 LTR ERV1 274 431 -260 2204 140 39 0 chr13 70381327 70381684 -49363214 - THE1C LTR MaLR -4 371 1 4601 111 1 42 chr13 70381684 70381935 -49362963 + LTR8 LTR ERV1 431 691 0 2195 108 0 22 chr13 70382851 70383166 -49361732 + AluSg SINE Alu 1 308 -2 316 269 29 0 chr13 70383627 70383731 -49361167 - MER103 DNA DNA -15 151 45 207 0 0 0 chr13 70384250 70384273 -49360625 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2211 70 28 0 chr13 70384276 70384561 -49360337 - AluSc SINE Alu -16 293 1 21 0 0 0 chr13 70385259 70385280 -49359618 + AT_rich Low_complexity Low_complexity 1 21 0 220 189 0 0 chr13 70385522 70385559 -49359339 + (CA)n Simple_repeat Simple_repeat 2 38 0 1506 240 64 21 chr13 70385663 70386100 -49358798 + MLT1C LTR MaLR 12 467 0 2396 67 3 3 chr13 70386594 70386894 -49358004 + AluY SINE Alu 1 300 -11 1767 218 118 71 chr13 70388089 70388257 -49356641 - MER50 LTR ERV1 0 734 575 1889 115 33 39 chr13 70388257 70388562 -49356336 + AluSx SINE Alu 1 303 -9 1767 218 118 71 chr13 70388562 70389085 -49355813 - MER50 LTR ERV1 -159 575 10 2208 132 8 14 chr13 70389659 70390014 -49354884 + THE1A LTR MaLR 1 353 -2 7279 89 6 2 chr13 70390482 70391447 -49353451 - LTR5 LTR ERVK 0 969 1 317 286 126 0 chr13 70391500 70391619 -49353279 - LTR16C LTR ERVL 0 491 358 235 329 145 53 chr13 70391667 70391819 -49353079 - LTR16C LTR ERVL -237 254 89 936 356 64 37 chr13 70392819 70393964 -49350934 - HERV16 LTR ERVL -3425 1571 744 335 294 9 0 chr13 70394019 70394113 -49350785 - LTR16C LTR ERVL -10 478 349 1103 264 24 57 chr13 70394202 70394573 -49350325 + MLT1C LTR MaLR 73 431 -36 771 320 44 36 chr13 70394662 70395049 -49349849 - LTR16C LTR ERVL -99 392 3 501 324 122 28 chr13 70395998 70396471 -49348427 - L2 LINE L2 0 3313 2755 3869 135 16 8 chr13 70396471 70397101 -49347797 - MER41B LTR ERV1 0 635 1 501 324 122 28 chr13 70397101 70397272 -49347626 - L2 LINE L2 -558 2755 2601 4271 97 3 3 chr13 70397294 70397894 -49347004 + MER4A LTR ERV1 1 600 0 2308 104 0 3 chr13 70399976 70400285 -49344613 + AluY SINE Alu 1 308 -3 644 177 0 8 chr13 70401536 70401660 -49343238 - MER4E LTR ERV1 0 766 644 180 111 0 0 chr13 70402421 70402448 -49342450 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1105 307 78 43 chr13 70403238 70403802 -49341096 + L2 LINE L2 2155 2738 -576 557 241 27 98 chr13 70403880 70404104 -49340794 + L2 LINE L2 3100 3307 -6 219 336 153 24 chr13 70404123 70404501 -49340397 + L2 LINE L2 1959 2385 -929 1835 170 7 0 chr13 70404528 70404822 -49340076 + AluSx SINE Alu 1 296 -16 182 391 58 26 chr13 70404889 70405045 -49339853 - MIR3 SINE MIR -6 202 42 2139 219 28 32 chr13 70405279 70405749 -49339149 + MER70A LTR ERVL 1 468 -4 24 0 0 0 chr13 70406516 70406540 -49338358 + AT_rich Low_complexity Low_complexity 1 24 0 1877 185 67 15 chr13 70407354 70407579 -49337319 - MSTA LTR MaLR -2 426 214 3098 127 7 50 chr13 70407579 70408098 -49336800 + MER75 DNA T2_type 1 498 -16 207 0 0 0 chr13 70408098 70408121 -49336777 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3098 127 7 50 chr13 70408121 70408138 -49336760 + MER75 DNA T2_type 498 514 0 1877 185 67 15 chr13 70408138 70408317 -49336581 - MSTA LTR MaLR -214 214 1 8356 198 17 25 chr13 70408317 70408381 -49336517 - MSTA-int LTR MaLR 0 1651 1588 2077 119 13 0 chr13 70408381 70408683 -49336215 + AluSx SINE Alu 6 311 -1 8356 198 17 25 chr13 70408683 70409798 -49335100 - MSTA-int LTR MaLR -63 1588 485 1822 128 0 69 chr13 70409798 70410152 -49334746 - AluSx SINE Alu 0 333 1 8356 198 17 25 chr13 70410152 70410634 -49334264 - MSTA-int LTR MaLR -1166 485 1 2064 178 43 12 chr13 70410634 70411049 -49333849 - MSTA LTR MaLR 0 428 1 27 62 0 0 chr13 70411859 70411907 -49332991 + AT_rich Low_complexity Low_complexity 1 48 0 24 32 0 0 chr13 70412453 70412484 -49332414 + AT_rich Low_complexity Low_complexity 1 31 0 267 79 0 0 chr13 70413411 70413449 -49331449 + (TG)n Simple_repeat Simple_repeat 1 38 0 231 61 0 0 chr13 70413449 70413482 -49331416 + (GA)n Simple_repeat Simple_repeat 2 34 0 20591 160 42 30 chr13 70413891 70416227 -49328671 + L1MA3 LINE L1 17 2323 -5242 2170 117 0 3 chr13 70416227 70416534 -49328364 - AluSg SINE Alu -4 306 1 20591 160 42 30 chr13 70416534 70417189 -49327709 + L1MA3 LINE L1 2323 2968 -4597 2199 67 0 34 chr13 70417189 70417487 -49327411 + AluY SINE Alu 1 288 -23 20591 160 42 30 chr13 70417487 70417581 -49327317 + L1MA3 LINE L1 2968 3059 -4506 1295 192 138 0 chr13 70417581 70417841 -49327057 + AluJb SINE Alu 3 298 -14 20591 160 42 30 chr13 70417841 70419895 -49325003 + L1MA3 LINE L1 3059 5231 -2334 3585 133 15 11 chr13 70419905 70420520 -49324378 + L1MA3 LINE L1 7107 7723 -1 28 48 0 0 chr13 70420844 70420886 -49324012 + AT_rich Low_complexity Low_complexity 1 42 0 27 96 0 0 chr13 70421128 70421211 -49323687 + AT_rich Low_complexity Low_complexity 1 83 0 21 36 0 0 chr13 70421225 70421253 -49323645 + AT_rich Low_complexity Low_complexity 1 28 0 214 329 66 15 chr13 70421651 70421788 -49323110 - L2 LINE L2 -14 3299 3156 182 333 156 0 chr13 70424000 70424090 -49320808 - L2 LINE L2 -18 3295 3192 308 293 15 8 chr13 70425031 70425164 -49319734 + L1ME LINE L1 5538 5671 -450 237 319 52 22 chr13 70425530 70425665 -49319233 + L2 LINE L2 2219 2357 -957 190 276 190 0 chr13 70425812 70425870 -49319028 - L2 LINE L2 -55 3258 3190 308 293 15 8 chr13 70426809 70426942 -49317956 + L1ME LINE L1 5538 5671 -450 265 341 107 23 chr13 70427308 70427569 -49317329 + L2 LINE L2 2219 2501 -813 294 259 65 56 chr13 70428071 70428179 -49316719 + MLT1J2 LTR MaLR 106 214 -236 1406 301 95 16 chr13 70429354 70429644 -49315254 + L1MEc LINE L1 38 304 -6092 336 102 0 0 chr13 70429644 70429693 -49315205 + (CA)n Simple_repeat Simple_repeat 2 50 0 1406 301 95 16 chr13 70429693 70430076 -49314822 + L1MEc LINE L1 304 764 -5632 649 320 57 9 chr13 70430058 70430374 -49314524 + L1MEc LINE L1 1486 1816 -4580 * 980 227 46 33 chr13 70430390 70430785 -49314113 + L1MEc LINE L1 2153 2511 -3704 359 282 86 4 chr13 70430788 70430997 -49313901 + L1MA10 LINE L1 5952 6332 -2 1981 267 67 30 chr13 70431029 70431826 -49313072 - L1M4 LINE L1 -2038 4108 3283 23 0 0 0 chr13 70432354 70432377 -49312521 + AT_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr13 70433272 70433306 -49311592 + (TA)n Simple_repeat Simple_repeat 2 35 0 8323 54 6 0 chr13 70433630 70435466 -49309432 - L1PA5 LINE L1 -2 6152 4311 1916 130 0 0 chr13 70435470 70435740 -49309158 - AluY SINE Alu -39 272 3 1691 164 50 10 chr13 70436159 70436458 -49308440 - AluSx SINE Alu -1 311 1 1270 206 34 120 chr13 70436898 70437411 -49307487 - MER67D LTR ERV1 0 661 81 1733 148 58 36 chr13 70437411 70437776 -49307122 - THE1C LTR MaLR 0 375 3 1270 206 34 120 chr13 70437776 70437849 -49307049 - MER67D LTR ERV1 -580 81 3 254 206 213 92 chr13 70437987 70438128 -49306770 + MLT1J LTR MaLR 352 509 -2 1412 121 80 0 chr13 70438193 70438406 -49306492 + MER4E LTR ERV1 1 231 -535 4383 108 68 30 chr13 70438406 70439426 -49305472 + MER11A LTR ERVK 1 1266 0 3677 89 45 7 chr13 70439426 70439956 -49304942 + MER4E LTR ERV1 217 766 0 2357 84 0 10 chr13 70441208 70441519 -49303379 - AluY SINE Alu -3 308 1 289 246 16 0 chr13 70441692 70441753 -49303145 - L2 LINE L2 -5 3308 3247 231 294 64 28 chr13 70441871 70441980 -49302918 + MIR SINE MIR 99 211 -51 24 32 0 0 chr13 70442662 70442693 -49302205 + AT_rich Low_complexity Low_complexity 1 31 0 235 266 97 40 chr13 70443289 70443413 -49301485 + L2 LINE L2 3183 3313 0 222 189 38 0 chr13 70443907 70443960 -49300938 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 247 181 28 28 chr13 70443977 70444049 -49300849 + GA-rich Low_complexity Low_complexity 3 74 0 233 267 0 0 chr13 70444049 70444109 -49300789 + (TATG)n Simple_repeat Simple_repeat 2 61 0 329 288 121 42 chr13 70444534 70444749 -49300149 + HAL1 LINE L1 2255 2486 -21 1932 199 30 39 chr13 70444845 70445268 -49299630 + MLT2C2 LTR ERVL 1 421 -43 261 57 0 0 chr13 70445268 70445303 -49299595 + (CA)n Simple_repeat Simple_repeat 2 36 0 1932 199 30 39 chr13 70445303 70445347 -49299551 + MLT2C2 LTR ERVL 421 464 0 33775 100 26 9 chr13 70445377 70450402 -49294496 + L1PA6 LINE L1 11 5124 -1022 6584 63 24 3 chr13 70450467 70451512 -49293386 + L1PA6 LINE L1 5098 6149 -5 421 276 16 24 chr13 70451823 70451950 -49292948 + L2 LINE L2 3186 3311 -2 2267 84 7 7 chr13 70452249 70452545 -49292353 + AluSq SINE Alu 1 296 -17 809 208 19 6 chr13 70453494 70453653 -49291245 - MLT1A1 LTR MaLR -2 363 203 565 267 72 53 chr13 70453922 70454240 -49290658 + LTR40a LTR ERVL 181 504 -15 711 209 0 8 chr13 70454384 70454513 -49290385 - FLAM_A SINE Alu -4 129 2 616 281 109 82 chr13 70454727 70455239 -49289659 - MER21B LTR ERV1 -197 666 141 32 95 0 0 chr13 70455423 70455518 -49289380 + AT_rich Low_complexity Low_complexity 1 95 0 194 283 283 19 chr13 70455682 70455788 -49289110 + L3 LINE CR1 1441 1574 -3 201 368 89 16 chr13 70455854 70456101 -49288797 + L2 LINE L2 2376 2640 -674 7208 48 14 0 chr13 70457133 70458166 -49286732 - L1PA5 LINE L1 0 6154 5120 4713 38 0 0 chr13 70458166 70458739 -49286159 + L1PA5 LINE L1 4549 5121 -1025 601 298 76 73 chr13 70458739 70459149 -49285749 + MLT1J LTR MaLR 100 510 -1 465 163 130 24 chr13 70459183 70459306 -49285592 + MER5C DNA MER1_type 1 136 -188 231 288 15 0 chr13 70459806 70459872 -49285026 + GA-rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr13 70460028 70460060 -49284838 + AT_rich Low_complexity Low_complexity 1 32 0 195 89 54 36 chr13 70460784 70460840 -49284058 + A-rich Low_complexity Low_complexity 5 61 0 21 0 0 0 chr13 70461026 70461047 -49283851 + AT_rich Low_complexity Low_complexity 1 21 0 181 250 0 23 chr13 70462823 70462867 -49282031 + L2 LINE L2 3267 3309 -4 28 29 0 0 chr13 70464023 70464058 -49280840 + AT_rich Low_complexity Low_complexity 1 35 0 29 78 0 0 chr13 70464234 70464298 -49280600 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr13 70464671 70464693 -49280205 + AT_rich Low_complexity Low_complexity 1 22 0 237 241 17 0 chr13 70465568 70465626 -49279272 - MER5A DNA MER1_type -84 105 47 1155 248 50 16 chr13 70465655 70465978 -49278920 - MER58B DNA MER1_type -5 336 3 2224 217 12 15 chr13 70466088 70466653 -49278245 + MER67C LTR ERV1 1 619 -91 283 132 44 29 chr13 70466971 70467039 -49277859 - MER4D LTR ERV1 -7 896 828 616 165 18 9 chr13 70467040 70467149 -49277749 - MER61E LTR ERV1 -117 452 343 264 287 0 89 chr13 70467228 70467329 -49277569 - MER61E LTR ERV1 -379 190 99 * 460 230 35 9 chr13 70467326 70467439 -49277459 - LTR25 LTR ERV1 -431 363 248 3083 153 45 72 chr13 70467701 70468127 -49276771 - MER39B LTR ERV1 0 653 250 946 186 124 117 chr13 70468127 70468418 -49276480 - AluJo SINE Alu -6 296 4 3083 153 45 72 chr13 70468418 70468653 -49276245 - MER39B LTR ERV1 -403 250 10 26 64 0 0 chr13 70469836 70469883 -49275015 + AT_rich Low_complexity Low_complexity 1 47 0 196 220 80 0 chr13 70469903 70469953 -49274945 - L2 LINE L2 -1 3271 3218 30 27 0 0 chr13 70471699 70471736 -49273162 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 70471754 70471775 -49273123 + AT_rich Low_complexity Low_complexity 1 21 0 1231 216 18 66 chr13 70472388 70472781 -49272117 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr13 70472828 70472849 -49272049 + AT_rich Low_complexity Low_complexity 1 21 0 2358 76 0 13 chr13 70473061 70473363 -49271535 + AluY SINE Alu 1 298 -13 34 55 0 0 chr13 70474969 70475024 -49269874 + AT_rich Low_complexity Low_complexity 1 55 0 23 54 0 0 chr13 70475118 70475155 -49269743 + AT_rich Low_complexity Low_complexity 1 37 0 776 168 0 7 chr13 70475552 70475701 -49269197 - L1 LINE L1 -2159 3987 3840 * 2832 121 28 99 chr13 70475700 70476101 -49268797 + L1PB1 LINE L1 5110 5435 -716 2754 19 0 6 chr13 70476101 70476417 -49268481 + AluYb8 SINE Alu 1 314 -4 2832 121 28 99 chr13 70476417 70476751 -49268147 + L1PB1 LINE L1 5435 5791 -360 416 154 39 26 chr13 70476751 70476907 -49267991 + (TA)n Simple_repeat Simple_repeat 1 158 0 2404 116 3 14 chr13 70476919 70477290 -49267608 + L1PB1 LINE L1 5782 6148 -3 3192 194 102 19 chr13 70477302 70478111 -49266787 + L1MB2 LINE L1 5293 6169 -2 21 0 0 0 chr13 70478592 70478613 -49266285 + AT_rich Low_complexity Low_complexity 1 21 0 989 173 5 74 chr13 70481133 70481335 -49263563 + Tigger3(Golem) DNA MER2_type 1 188 -2841 3540 160 17 14 chr13 70481338 70481988 -49262910 + Tigger3(Golem) DNA MER2_type 2377 3028 -1 309 299 118 24 chr13 70482227 70482354 -49262544 + L2 LINE L2 2376 2514 -800 256 329 112 0 chr13 70482475 70482618 -49262280 + L2 LINE L2 2903 3061 -211 199 0 0 61 chr13 70486307 70486340 -49258558 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr13 70486629 70486658 -49258240 + AT_rich Low_complexity Low_complexity 1 29 0 246 279 67 78 chr13 70487364 70487917 -49256981 + L1MC5 LINE L1 7382 7928 -33 26 74 0 0 chr13 70488301 70488355 -49256543 + AT_rich Low_complexity Low_complexity 1 54 0 219 36 0 0 chr13 70488824 70488852 -49256046 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 235 193 35 0 chr13 70489319 70489376 -49255522 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 899 285 101 42 chr13 70489681 70490702 -49254196 - L1ME LINE L1 -448 5714 4627 21 71 0 0 chr13 70490757 70490799 -49254099 + AT_rich Low_complexity Low_complexity 1 42 0 1085 179 27 146 chr13 70490826 70491156 -49253742 - AluJb SINE Alu -11 291 1 422 296 126 23 chr13 70491156 70491640 -49253258 - L1ME LINE L1 -1819 4327 3794 250 304 0 0 chr13 70491831 70491910 -49252988 + L1M4 LINE L1 2696 2774 -3372 207 0 0 0 chr13 70492596 70492619 -49252279 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1598 191 3 3 chr13 70492632 70492920 -49251978 - AluJb SINE Alu -24 288 1 1526 160 98 28 chr13 70493221 70493539 -49251359 + THE1C LTR MaLR 1 340 -35 636 79 0 0 chr13 70493540 70493629 -49251269 - AluY SINE Alu -5 306 218 231 121 0 0 chr13 70493633 70493666 -49251232 + THE1C LTR MaLR 396 428 0 237 250 28 0 chr13 70494177 70494249 -49250649 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 232 328 16 0 chr13 70494314 70494378 -49250520 - L2 LINE L2 -8 3305 3241 225 274 53 74 chr13 70494785 70494880 -49250018 + L2 LINE L2 3221 3313 0 497 344 121 21 chr13 70496218 70496549 -49248349 + MLT1I LTR MaLR 12 375 -34 243 0 0 0 chr13 70497210 70497237 -49247661 + (TG)n Simple_repeat Simple_repeat 1 27 0 240 35 0 0 chr13 70497236 70497265 -49247633 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 454 292 154 51 chr13 70498401 70498966 -49245932 - L2 LINE L2 0 3313 2692 1864 127 13 34 chr13 70498970 70499518 -49245380 + MER4A LTR ERV1 1 664 0 25 31 0 0 chr13 70500346 70500378 -49244520 + AT_rich Low_complexity Low_complexity 1 32 0 349 94 0 0 chr13 70500406 70500459 -49244439 + L1 LINE L1 3412 3464 -2682 4857 171 12 28 chr13 70500530 70501500 -49243398 + L1MA6 LINE L1 5345 6299 -1 1727 175 55 62 chr13 70501497 70501544 -49243354 + L1 LINE L1 3510 3556 -2590 * 3416 120 53 33 chr13 70501544 70501867 -49243031 + MER4B LTR ERV1 1 343 -267 2137 109 20 0 chr13 70501867 70502161 -49242737 - AluSg SINE Alu -10 300 1 3416 120 53 33 chr13 70502161 70502435 -49242463 + MER4B LTR ERV1 343 610 0 1727 175 55 62 chr13 70502435 70502901 -49241997 + L1 LINE L1 3556 4019 -2127 1111 297 16 26 chr13 70502949 70503326 -49241572 - LTR40a LTR ERVL -145 374 2 830 313 22 8 chr13 70503351 70503619 -49241279 - MLT1J LTR MaLR -226 285 14 196 271 85 0 chr13 70503988 70504047 -49240851 + L2 LINE L2 2997 3060 -212 234 262 97 19 chr13 70504829 70504932 -49239966 + L2 LINE L2 3160 3270 -43 487 184 28 9 chr13 70506204 70506313 -49238585 - MER69A DNA AcHobo -35 142 32 204 333 30 15 chr13 70506313 70506379 -49238519 - L2 LINE L2 -46 3226 3160 473 99 49 25 chr13 70506431 70506543 -49238355 - AluSg/x SINE Alu 0 312 199 1972 125 0 18 chr13 70506564 70506844 -49238054 + AluSx SINE Alu 18 292 -20 189 0 0 0 chr13 70506861 70506882 -49238016 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 279 0 0 0 chr13 70508294 70508325 -49236573 + (TG)n Simple_repeat Simple_repeat 2 32 0 1489 194 10 30 chr13 70508605 70508904 -49235994 - AluJo SINE Alu -17 295 3 22 0 0 0 chr13 70509948 70509970 -49234928 + AT_rich Low_complexity Low_complexity 1 22 0 1158 276 140 23 chr13 70510495 70511197 -49233701 + LTR50 LTR ERVL 12 795 0 847 279 67 56 chr13 70511509 70512029 -49232869 + L1ME LINE L1 5260 5785 -385 2588 146 9 2 chr13 70512034 70512459 -49232439 + MSTA LTR MaLR 1 428 0 385 325 138 36 chr13 70513051 70513713 -49231185 + L1M4 LINE L1 3765 4493 -1653 4970 111 7 3 chr13 70514031 70514706 -49230192 + L1PB1 LINE L1 5109 5789 -362 186 43 0 0 chr13 70514706 70514729 -49230169 + (TA)n Simple_repeat Simple_repeat 1 23 0 4970 111 7 3 chr13 70514729 70514916 -49229982 + L1PB1 LINE L1 5789 5974 -177 6734 230 17 45 chr13 70514927 70517675 -49227223 + L1P3 LINE L1 10 2702 -3759 264 306 70 70 chr13 70517679 70517829 -49227069 - L2 LINE L2 -577 2737 2585 841 196 18 70 chr13 70517829 70518058 -49226840 + MER20 DNA MER1_type 3 219 0 264 306 70 70 chr13 70518058 70518093 -49226805 - L2 LINE L2 -728 2586 2552 530 121 38 3 chr13 70518602 70518699 -49226199 + L1MB1 LINE L1 6075 6167 -1 632 221 33 66 chr13 70519412 70519625 -49225273 - LTR40b LTR ERVL -4 458 253 1376 216 63 54 chr13 70519626 70520168 -49224730 + MER67C LTR ERV1 1 510 -4 854 263 35 4 chr13 70520227 70520455 -49224443 - LTR40a LTR ERVL -282 237 3 439 316 29 7 chr13 70520491 70520627 -49224271 - L2 LINE L2 0 3313 3175 748 359 60 52 chr13 70521180 70521529 -49223369 - L2 LINE L2 -494 2820 2475 2143 129 0 16 chr13 70521529 70521846 -49223052 + AluSx SINE Alu 1 312 0 748 359 60 52 chr13 70521846 70522331 -49222567 - L2 LINE L2 -839 2475 1979 180 148 0 0 chr13 70522399 70522426 -49222472 - L3 LINE CR1 -1240 337 311 32 57 0 0 chr13 70522508 70522561 -49222337 + AT_rich Low_complexity Low_complexity 1 53 0 31 26 0 0 chr13 70522753 70522791 -49222107 + AT_rich Low_complexity Low_complexity 1 38 0 1035 247 61 88 chr13 70522854 70523517 -49221381 - L1ME LINE L1 -358 6040 5397 309 262 99 0 chr13 70523558 70523699 -49221199 + L1M4 LINE L1 4889 5043 -1103 22 56 0 0 chr13 70523793 70523829 -49221069 + AT_rich Low_complexity Low_complexity 1 36 0 500 307 69 13 chr13 70523896 70524345 -49220553 - L1ME LINE L1 -1538 4844 4371 332 271 149 16 chr13 70524528 70524716 -49220182 - L1ME LINE L1 -3955 2429 2217 388 351 20 0 chr13 70525401 70525552 -49219346 + MIR SINE MIR 92 245 -17 392 297 66 54 chr13 70525610 70525869 -49219029 + L1ME LINE L1 5336 5597 -565 27 0 0 0 chr13 70525900 70525927 -49218971 + AT_rich Low_complexity Low_complexity 1 27 0 194 167 0 83 chr13 70526084 70526132 -49218766 - L2 LINE L2 -105 3208 3165 461 285 140 40 chr13 70526234 70526273 -49218625 + MIR SINE MIR 41 75 -187 2447 96 8 8 chr13 70526273 70526628 -49218270 - THE1A LTR MaLR 0 355 1 461 285 140 40 chr13 70526628 70526788 -49218110 + MIR SINE MIR 75 260 -2 21 0 0 0 chr13 70527473 70527494 -49217404 + AT_rich Low_complexity Low_complexity 1 21 0 46 62 0 0 chr13 70528077 70528158 -49216740 + AT_rich Low_complexity Low_complexity 1 81 0 31 26 0 0 chr13 70528468 70528506 -49216392 + AT_rich Low_complexity Low_complexity 1 38 0 210 191 0 0 chr13 70528521 70528563 -49216335 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 571 254 59 12 chr13 70528862 70529031 -49215867 - MER5B DNA MER1_type -1 177 1 402 57 0 0 chr13 70529130 70529183 -49215715 + (TG)n Simple_repeat Simple_repeat 2 54 0 535 320 127 37 chr13 70529521 70529930 -49214968 - L2 LINE L2 -338 2976 2531 685 243 20 0 chr13 70530011 70530163 -49214735 + MIR SINE MIR 77 231 -31 27 73 0 0 chr13 70530417 70530472 -49214426 + AT_rich Low_complexity Low_complexity 1 55 0 963 296 72 7 chr13 70530914 70531218 -49213680 + LTR16B LTR ERVL 85 408 -56 1679 169 3 17 chr13 70531877 70532167 -49212731 - AluJb SINE Alu -26 286 1 227 240 120 67 chr13 70532566 70532641 -49212257 + L2 LINE L2 3142 3220 -52 2204 178 9 52 chr13 70533048 70533493 -49211405 + MSTB LTR MaLR 1 426 0 234 365 83 0 chr13 70533868 70533964 -49210934 + MIR SINE MIR 12 115 -147 3159 204 45 68 chr13 70535045 70535703 -49209195 - MER31-int LTR ERV1 -1587 4744 4118 2235 95 0 16 chr13 70535703 70536009 -49208889 + AluSq SINE Alu 9 309 -4 3159 204 45 68 chr13 70536009 70536407 -49208491 - MER31-int LTR ERV1 -2213 4118 3712 859 202 67 55 chr13 70536422 70536927 -49207971 - MER31-int LTR ERV1 -2866 2257 1753 535 143 0 0 chr13 70537206 70537283 -49207615 - MER31-int LTR ERV1 -2991 3340 3264 899 154 14 72 chr13 70537331 70537539 -49207359 - MER31-int LTR ERV1 -3055 3276 3081 278 171 118 0 chr13 70537552 70537628 -49207270 - MER31-int LTR ERV1 -3767 1169 1085 367 246 0 0 chr13 70537667 70537766 -49207132 - MER31-int LTR ERV1 -3694 1286 1096 496 254 45 97 chr13 70537789 70538077 -49206821 - MER34C LTR ERV1 -156 429 157 1268 166 13 99 chr13 70538331 70538373 -49206525 - MER31-int LTR ERV1 -6696 841 797 1918 137 3 0 chr13 70538373 70538680 -49206218 - AluSq SINE Alu 0 308 1 1268 166 13 99 chr13 70538680 70538950 -49205948 - MER31-int LTR ERV1 -6740 797 555 2086 187 18 5 chr13 70539117 70539507 -49205391 - MER57A LTR ERV1 0 403 9 244 163 82 0 chr13 70539507 70539556 -49205342 - MER57A LTR ERV1 -350 53 1 2740 171 29 25 chr13 70539573 70540122 -49204776 + MER57A-int LTR ERV1 5271 5821 -1716 6602 188 39 9 chr13 70540435 70541716 -49203182 + MER57A-int LTR ERV1 5825 7144 -393 800 199 270 13 chr13 70541716 70542023 -49202875 + LTR54B LTR ERV1 1 386 -112 430 206 0 21 chr13 70542031 70542128 -49202770 + MER57A-int LTR ERV1 7443 7537 0 1570 160 143 42 chr13 70542129 70542485 -49202413 + MER57A LTR ERV1 2 393 -10 333 247 45 0 chr13 70542686 70542775 -49202123 + MER5A DNA MER1_type 9 101 -88 2157 138 0 0 chr13 70542966 70543278 -49201620 - AluSx SINE Alu 0 312 1 225 207 67 52 chr13 70543284 70543419 -49201479 + Charlie7 DNA MER1_type 2473 2609 -3 359 298 33 40 chr13 70543593 70543744 -49201154 + MLT1J LTR MaLR 1 150 -361 222 37 0 0 chr13 70544497 70544524 -49200374 + (TA)n Simple_repeat Simple_repeat 2 28 0 812 156 0 0 chr13 70545443 70545565 -49199333 + FLAM_C SINE Alu 3 124 -19 893 267 132 73 chr13 70547433 70548424 -49196474 + MER52A LTR ERV1 1 1738 -17 671 195 0 23 chr13 70548528 70548656 -49196242 - FLAM_C SINE Alu -9 134 10 1194 117 18 6 chr13 70548788 70548959 -49195939 - AluSg/x SINE Alu -25 285 113 21 0 0 0 chr13 70549770 70549791 -49195107 + AT_rich Low_complexity Low_complexity 1 21 0 24 41 0 20 chr13 70549959 70549991 -49194907 + AT_rich Low_complexity Low_complexity 1 33 -15 1455 124 0 0 chr13 70549991 70550193 -49194705 - AluSg/x SINE Alu -25 285 84 24 41 0 20 chr13 70550193 70550209 -49194689 + AT_rich Low_complexity Low_complexity 33 48 0 22 56 0 0 chr13 70550273 70550309 -49194589 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 70551178 70551202 -49193696 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr13 70551576 70551612 -49193286 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr13 70551728 70551758 -49193140 + AT_rich Low_complexity Low_complexity 1 30 0 185 349 15 15 chr13 70551824 70551890 -49193008 + L2 LINE L2 3166 3231 -41 195 42 0 0 chr13 70551890 70551914 -49192984 + (TA)n Simple_repeat Simple_repeat 1 24 0 366 143 0 0 chr13 70552624 70552687 -49192211 + MER41B LTR ERV1 485 547 -88 21 0 0 0 chr13 70553462 70553483 -49191415 + AT_rich Low_complexity Low_complexity 1 21 0 539 205 0 0 chr13 70553720 70553832 -49191066 - AluY SINE Alu -15 296 185 2142 107 3 16 chr13 70553897 70554207 -49190691 + AluY SINE Alu 1 306 -5 189 107 0 0 chr13 70554353 70554381 -49190517 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 555 303 7 7 chr13 70554400 70554552 -49190346 + MIR3 SINE MIR 51 202 -6 25 31 0 0 chr13 70554711 70554743 -49190155 + AT_rich Low_complexity Low_complexity 1 32 0 2318 113 19 16 chr13 70554975 70555338 -49189560 + THE1B LTR MaLR 1 364 0 32 43 0 0 chr13 70555405 70555451 -49189447 + AT_rich Low_complexity Low_complexity 1 46 0 205 424 73 7 chr13 70555596 70555747 -49189151 + L2 LINE L2 2895 3055 -217 36 53 0 0 chr13 70556024 70556081 -49188817 + AT_rich Low_complexity Low_complexity 1 57 0 2140 132 0 0 chr13 70556819 70557122 -49187776 - AluY SINE Alu -6 305 3 450 214 22 22 chr13 70557373 70557551 -49187347 + CT-rich Low_complexity Low_complexity 1 178 0 1831 120 35 14 chr13 70557814 70558134 -49186764 - AluSq SINE Alu 0 326 1 647 99 10 0 chr13 70558712 70558813 -49186085 + (TA)n Simple_repeat Simple_repeat 2 103 0 246 62 0 0 chr13 70559300 70559332 -49185566 + (T)n Simple_repeat Simple_repeat 1 32 0 415 316 36 6 chr13 70559400 70559568 -49185330 - HAL1 LINE L1 -860 1647 1475 434 321 84 57 chr13 70559644 70560118 -49184780 - HAL1 LINE L1 -1045 1462 976 43286 42 3 8 chr13 70560206 70562909 -49181989 + L1PA4 LINE L1 5 2720 -3435 2720 16 0 10 chr13 70562909 70563218 -49181680 - AluYa5 SINE Alu -5 306 1 43286 42 3 8 chr13 70563218 70566693 -49178205 + L1PA4 LINE L1 2720 6147 -8 513 104 0 0 chr13 70567044 70567121 -49177777 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 27 29 0 0 chr13 70567261 70567295 -49177603 + AT_rich Low_complexity Low_complexity 1 34 0 43 47 0 0 chr13 70567344 70567408 -49177490 + AT_rich Low_complexity Low_complexity 1 64 0 192 313 16 93 chr13 70567437 70567619 -49177279 + MIR SINE MIR 29 196 -66 348 254 227 16 chr13 70568209 70568394 -49176504 + L1MB7 LINE L1 6 229 -6313 981 253 68 34 chr13 70568410 70568794 -49176104 + L1MB7 LINE L1 4073 4469 -2175 903 102 0 0 chr13 70568794 70568912 -49175986 + AluSq/x SINE Alu 1 118 -194 3125 220 77 22 chr13 70569100 70570007 -49174891 + L1MB7 LINE L1 4731 5587 -1095 1081 82 0 7 chr13 70570007 70570153 -49174745 + L1PA10 LINE L1 6014 6158 -10 3125 220 77 22 chr13 70570153 70571073 -49173825 + L1MB7 LINE L1 5587 6663 -19 294 296 24 41 chr13 70572460 70572629 -49172269 + GA-rich Low_complexity Low_complexity 2 167 0 21 36 0 0 chr13 70572899 70572927 -49171971 + AT_rich Low_complexity Low_complexity 1 28 0 216 211 0 0 chr13 70573244 70573282 -49171616 + polypyrimidine Low_complexity Low_complexity 1 38 0 1877 178 85 0 chr13 70574285 70574683 -49170215 + MSTB1 LTR MaLR 1 432 0 2306 61 0 42 chr13 70575562 70575873 -49169025 + AluY SINE Alu 1 298 -13 30 0 0 0 chr13 70576633 70576663 -49168235 + AT_rich Low_complexity Low_complexity 1 30 0 1710 134 6 66 chr13 70576814 70577134 -49167764 + AluSx SINE Alu 1 301 -11 1297 183 141 112 chr13 70577611 70577810 -49167088 - MLT1D LTR MaLR 0 505 313 1850 144 52 21 chr13 70577810 70578136 -49166762 + MER1B DNA MER1_type 1 336 -1 1297 183 141 112 chr13 70578136 70578427 -49166471 - MLT1D LTR MaLR -192 313 1 21 36 0 0 chr13 70578628 70578656 -49166242 + AT_rich Low_complexity Low_complexity 1 28 0 407 224 16 24 chr13 70579047 70579172 -49165726 + L1PB4 LINE L1 6027 6150 -6 418 183 11 32 chr13 70579267 70579360 -49165538 - Charlie8 DNA MER1_type -2224 193 103 23 68 0 0 chr13 70579567 70579611 -49165287 + AT_rich Low_complexity Low_complexity 1 44 0 3885 68 31 2 chr13 70579897 70580410 -49164488 - L1PA8 LINE L1 -6 6166 5639 267 31 0 0 chr13 70580410 70580442 -49164456 + Harlequin LTR ERV1 6857 6888 -8 1863 185 75 32 chr13 70580444 70580914 -49163984 + LTR2B LTR ERV1 1 490 0 618 150 0 0 chr13 70580967 70581067 -49163831 + HY3 scRNA scRNA 1 100 -1 22 56 0 0 chr13 70581139 70581175 -49163723 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 70581200 70581229 -49163669 + AT_rich Low_complexity Low_complexity 1 29 0 402 342 76 0 chr13 70581243 70581427 -49163471 - MIR SINE MIR -44 218 21 1822 240 89 50 chr13 70581516 70582090 -49162808 + MLT1E2 LTR MaLR 18 613 -13 306 304 109 71 chr13 70583506 70584255 -49160643 + L1M4 LINE L1 4224 5001 -1145 992 304 36 32 chr13 70584400 70584838 -49160060 + L1M2 LINE L1 11 450 -6399 929 244 34 55 chr13 70585649 70585940 -49158958 + L1PA5 LINE L1 449 733 -6116 9766 212 56 17 chr13 70586415 70591480 -49153418 + L1PA5 LINE L1 1427 6823 -34 321 89 0 0 chr13 70591487 70591532 -49153366 + (CA)n Simple_repeat Simple_repeat 2 46 0 5129 178 24 15 chr13 70591553 70592758 -49152140 + L1PA16 LINE L1 4265 5457 -709 2260 86 0 0 chr13 70592758 70593037 -49151861 + AluSc SINE Alu 1 279 -30 212 0 36 0 chr13 70593042 70593070 -49151828 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 5129 178 24 15 chr13 70593070 70593737 -49151161 + L1PA16 LINE L1 5460 6146 -20 27 0 0 0 chr13 70594125 70594152 -49150746 + AT_rich Low_complexity Low_complexity 1 27 0 2002 109 30 13 chr13 70594282 70594584 -49150314 - AluSx SINE Alu -5 307 1 1159 153 0 0 chr13 70594823 70595013 -49149885 + AluSg/x SINE Alu 122 311 -1 23 0 0 0 chr13 70595130 70595153 -49149745 + AT_rich Low_complexity Low_complexity 1 23 0 2357 87 0 0 chr13 70596246 70596545 -49148353 - AluSc SINE Alu -10 299 1 24 0 0 0 chr13 70597837 70597861 -49147037 + AT_rich Low_complexity Low_complexity 1 24 0 1134 211 42 4 chr13 70598219 70598456 -49146442 + Tigger6 DNA MER2_type 1 246 -1351 7138 190 2 1 chr13 70598566 70599994 -49144904 + L1 LINE L1 3037 4466 -1680 196 319 88 66 chr13 70600293 70600328 -49144570 + L2 LINE L2 2552 2585 -729 841 196 18 70 chr13 70600328 70600557 -49144341 - MER20 DNA MER1_type 0 219 3 196 319 88 66 chr13 70600557 70600703 -49144195 + L2 LINE L2 2585 2737 -577 6546 233 19 47 chr13 70600707 70603454 -49141444 - L1P3 LINE L1 -3759 2702 10 4970 111 7 3 chr13 70603465 70603652 -49141246 - L1PB1 LINE L1 -177 5974 5789 186 43 0 0 chr13 70603652 70603675 -49141223 + (TA)n Simple_repeat Simple_repeat 2 24 0 4970 111 7 3 chr13 70603675 70604350 -49140548 - L1PB1 LINE L1 -362 5789 5109 385 325 138 36 chr13 70604668 70605330 -49139568 - L1M4 LINE L1 -1653 4493 3765 2541 146 12 2 chr13 70605922 70606346 -49138552 - MSTA LTR MaLR 0 428 1 847 279 67 56 chr13 70606351 70606871 -49138027 - L1ME LINE L1 -385 5785 5260 1158 276 140 23 chr13 70607183 70607885 -49137013 - LTR50 LTR ERVL 0 795 12 22 0 0 0 chr13 70608410 70608432 -49136466 + AT_rich Low_complexity Low_complexity 1 22 0 1489 194 10 30 chr13 70609476 70609775 -49135123 + AluJo SINE Alu 3 295 -17 279 0 0 0 chr13 70610055 70610086 -49134812 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr13 70611498 70611519 -49133379 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2214 107 0 0 chr13 70611536 70611826 -49133072 - AluSg SINE Alu -20 290 1 24 0 0 0 chr13 70613119 70613143 -49131755 + AT_rich Low_complexity Low_complexity 1 24 0 1721 203 93 20 chr13 70613501 70613909 -49130989 + Tigger6 DNA MER2_type 1 438 -645 569 260 138 23 chr13 70614235 70614523 -49130375 - MER58 DNA MER1_type -15 2405 1 2253 109 0 0 chr13 70614621 70614923 -49129975 - AluSx SINE Alu -10 302 1 442 281 73 35 chr13 70615003 70615226 -49129672 + L2 LINE L2 3028 3264 -49 2213 103 3 3 chr13 70615226 70615528 -49129370 + AluSg SINE Alu 1 302 -8 442 281 73 35 chr13 70615528 70615564 -49129334 + L2 LINE L2 3264 3297 -16 23 33 0 0 chr13 70615652 70615682 -49129216 + AT_rich Low_complexity Low_complexity 1 30 0 182 400 0 10 chr13 70616545 70616645 -49128253 - MIR SINE MIR -80 182 84 39 50 0 0 chr13 70616752 70616812 -49128086 + AT_rich Low_complexity Low_complexity 1 60 0 245 106 0 43 chr13 70617281 70617328 -49127570 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 1417 221 78 34 chr13 70617759 70618233 -49126665 + L1ME2 LINE L1 5670 6164 0 28 48 0 0 chr13 70618822 70618864 -49126034 + AT_rich Low_complexity Low_complexity 1 42 0 2019 151 28 41 chr13 70619347 70619620 -49125278 + L1MA8 LINE L1 5862 6129 -162 1717 135 26 4 chr13 70619620 70619910 -49124988 + AluSq SINE Alu 11 306 0 2019 151 28 41 chr13 70619910 70620071 -49124827 + L1MA8 LINE L1 6129 6291 0 22 35 0 0 chr13 70620171 70620200 -49124698 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr13 70620464 70620514 -49124384 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr13 70620672 70620709 -49124189 + AT_rich Low_complexity Low_complexity 1 37 0 2187 104 0 3 chr13 70620762 70621061 -49123837 + AluSc SINE Alu 5 302 -7 9735 125 120 8 chr13 70621321 70622998 -49121900 + L1PB1 LINE L1 2 1865 -4998 * 13676 210 16 8 chr13 70622966 70625955 -49118943 + L1PB1 LINE L1 2412 5432 -1435 234 0 0 0 chr13 70625955 70625981 -49118917 + (CAA)n Simple_repeat Simple_repeat 2 27 0 13676 210 16 8 chr13 70625981 70627066 -49117832 + L1PB1 LINE L1 5432 6507 -360 363 228 22 7 chr13 70627066 70627187 -49117711 + (CATA)n Simple_repeat Simple_repeat 3 128 -12 2415 109 3 14 chr13 70627187 70627553 -49117345 + L1PB1 LINE L1 6503 6864 -3 363 228 22 7 chr13 70627553 70627567 -49117331 + (CATA)n Simple_repeat Simple_repeat 128 140 0 21 36 0 0 chr13 70629152 70629180 -49115718 + AT_rich Low_complexity Low_complexity 1 28 0 347 303 89 19 chr13 70630399 70630713 -49114185 + L1ME4a LINE L1 5513 5848 -273 225 224 82 0 chr13 70630869 70630954 -49113944 - L1MC4 LINE L1 -1337 6705 6614 232 133 0 0 chr13 70630966 70631011 -49113887 + LTR66 LTR ERVL 394 438 -172 2121 131 0 0 chr13 70633541 70633832 -49111066 - AluSx SINE Alu -21 291 1 396 59 0 0 chr13 70633995 70634046 -49110852 + (TATG)n Simple_repeat Simple_repeat 2 52 0 22 35 0 0 chr13 70634081 70634110 -49110788 + AT_rich Low_complexity Low_complexity 1 29 0 5210 175 30 15 chr13 70634493 70636474 -49108424 + L1MA4A LINE L1 4109 6121 -182 504 172 0 0 chr13 70636478 70636571 -49108327 + L1MA4A LINE L1 6188 6280 -23 897 45 0 0 chr13 70637120 70637232 -49107666 - L1PA5 LINE L1 -7 6147 6036 29 78 0 0 chr13 70637350 70637414 -49107484 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr13 70637447 70637477 -49107421 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr13 70637510 70637546 -49107352 + AT_rich Low_complexity Low_complexity 1 36 0 205 49 0 49 chr13 70637554 70637595 -49107303 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 518 220 17 0 chr13 70637826 70637944 -49106954 - MLT1A2 LTR MaLR -254 120 1 308 278 61 56 chr13 70637971 70638070 -49106828 + MER110-int LTR ERV1 3274 3371 -1276 225 0 0 0 chr13 70638070 70638095 -49106803 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 308 278 61 56 chr13 70638095 70638193 -49106705 + MER110-int LTR ERV1 3371 3472 -1175 1167 285 39 13 chr13 70638193 70638576 -49106322 + MER110 LTR ERV1 46 438 -53 23 68 0 0 chr13 70639915 70639959 -49104939 + AT_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr13 70641843 70641877 -49103021 + AT_rich Low_complexity Low_complexity 1 34 0 198 91 0 0 chr13 70642383 70642416 -49102482 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr13 70643135 70643156 -49101742 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 70644497 70644526 -49100372 + AT_rich Low_complexity Low_complexity 1 29 0 2685 106 0 3 chr13 70646448 70646824 -49098074 + THE1C LTR MaLR 1 375 0 2077 165 29 2 chr13 70647439 70647836 -49097062 - MSTB1 LTR MaLR -1 431 1 792 94 0 0 chr13 70648591 70648719 -49096179 + (TAGA)n Simple_repeat Simple_repeat 1 128 0 1944 138 38 30 chr13 70648746 70649116 -49095782 + THE1C LTR MaLR 1 373 -2 244 123 110 0 chr13 70649147 70649302 -49095596 + (TA)n Simple_repeat Simple_repeat 1 172 0 2031 247 15 15 chr13 70649320 70649839 -49095059 + LTR40a LTR ERVL 1 519 0 345 337 116 36 chr13 70650509 70650812 -49094086 + L2 LINE L2 2946 3272 0 21 36 0 0 chr13 70651034 70651062 -49093836 + AT_rich Low_complexity Low_complexity 1 28 0 249 64 3 0 chr13 70651115 70651156 -49093742 + L1PA6 LINE L1 6108 6149 -5 331 337 125 0 chr13 70652327 70652511 -49092387 + L2 LINE L2 2448 2654 -660 515 316 33 7 chr13 70652576 70652728 -49092170 + LTR33 LTR ERVL 55 210 -311 22 0 0 0 chr13 70653920 70653942 -49090956 + AT_rich Low_complexity Low_complexity 1 22 0 229 244 0 0 chr13 70654839 70654884 -49090014 + (TA)n Simple_repeat Simple_repeat 2 46 0 1985 81 13 64 chr13 70654970 70655327 -49089571 + AluSp SINE Alu 1 342 0 1303 197 94 43 chr13 70655889 70656260 -49088638 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 70657149 70657171 -49087727 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr13 70657578 70657625 -49087273 + AT_rich Low_complexity Low_complexity 1 47 0 191 167 0 21 chr13 70657673 70657721 -49087177 + (TA)n Simple_repeat Simple_repeat 1 47 0 1370 197 40 13 chr13 70658240 70658539 -49086359 - AluJo SINE Alu -5 307 1 26 64 0 0 chr13 70660892 70660939 -49083959 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr13 70660996 70661019 -49083879 + AT_rich Low_complexity Low_complexity 1 23 0 1788 45 0 0 chr13 70661094 70661318 -49083580 + L1PA4 LINE L1 5932 6155 0 22 88 0 0 chr13 70661319 70661376 -49083522 + AT_rich Low_complexity Low_complexity 1 57 0 21 89 0 0 chr13 70661776 70661832 -49083066 + AT_rich Low_complexity Low_complexity 1 56 0 21 82 0 0 chr13 70662598 70662647 -49082251 + AT_rich Low_complexity Low_complexity 1 49 0 1960 181 59 2 chr13 70663366 70663775 -49081123 - MSTB1 LTR MaLR 0 432 1 4600 226 45 30 chr13 70663775 70665323 -49079575 - MSTB1-int LTR MaLR 0 1580 1 1406 170 0 8 chr13 70665323 70665558 -49079340 - MSTB1 LTR MaLR 0 432 200 1187 150 40 0 chr13 70666072 70666272 -49078626 - MSTB1 LTR MaLR -224 208 1 194 411 28 9 chr13 70666406 70666513 -49078385 - MIR3 SINE MIR -53 155 47 246 365 47 12 chr13 70666523 70666693 -49078205 + L2 LINE L2 1446 1621 -1693 25 0 0 0 chr13 70666719 70666744 -49078154 + AT_rich Low_complexity Low_complexity 1 25 0 1053 38 0 8 chr13 70666944 70667075 -49077823 + L1PA7 LINE L1 6022 6151 -3 22 0 0 0 chr13 70667436 70667458 -49077440 + AT_rich Low_complexity Low_complexity 1 22 0 480 290 30 6 chr13 70667582 70667751 -49077147 + L2 LINE L2 2144 2316 -998 315 292 146 22 chr13 70668056 70668193 -49076705 - L2 LINE L2 -398 2916 2763 265 345 113 50 chr13 70668458 70668838 -49076060 - L2 LINE L2 -1429 1885 1482 2094 113 7 0 chr13 70670058 70670350 -49074548 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr13 70670764 70670785 -49074113 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 70671545 70671568 -49073330 + AT_rich Low_complexity Low_complexity 1 23 0 239 270 0 0 chr13 70671945 70672008 -49072890 + L1MC4 LINE L1 6641 6703 -1339 297 51 0 0 chr13 70672014 70672053 -49072845 + (GA)n Simple_repeat Simple_repeat 2 40 0 3455 46 101 0 chr13 70672057 70672513 -49072385 + L1PA5 LINE L1 5646 6147 -7 287 284 34 0 chr13 70673135 70673223 -49071675 + MIR SINE MIR 106 196 -66 256 231 130 11 chr13 70673439 70673588 -49071310 + MIR SINE MIR 62 234 -28 25 31 0 0 chr13 70673813 70673845 -49071053 + AT_rich Low_complexity Low_complexity 1 32 0 204 304 141 49 chr13 70674886 70675070 -49069828 + MIR3 SINE MIR 2 202 -6 273 303 79 79 chr13 70675250 70675415 -49069483 - MIR SINE MIR -49 213 49 187 357 31 23 chr13 70676370 70676499 -49068399 + L2 LINE L2 2592 2721 -593 206 190 0 69 chr13 70676499 70676557 -49068341 + T-rich Low_complexity Low_complexity 3 56 0 283 330 0 0 chr13 70676907 70676995 -49067903 + L2 LINE L2 3185 3272 0 180 0 0 0 chr13 70677729 70677749 -49067149 + (A)n Simple_repeat Simple_repeat 1 20 0 2754 22 0 0 chr13 70678226 70678542 -49066356 - AluYb8 SINE Alu -2 316 1 22 0 0 0 chr13 70679603 70679625 -49065273 + AT_rich Low_complexity Low_complexity 1 22 0 35 78 0 0 chr13 70679779 70679856 -49065042 + AT_rich Low_complexity Low_complexity 1 77 0 3003 208 41 0 chr13 70680660 70681267 -49063631 - MLT1A1-int LTR MaLR -1103 632 1 1552 219 29 9 chr13 70681267 70681609 -49063289 - MLT1A1 LTR MaLR 0 365 17 1158 214 38 115 chr13 70681648 70682091 -49062807 + MLT1C LTR MaLR 59 467 0 25 0 0 0 chr13 70682107 70682132 -49062766 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 70682346 70682368 -49062530 + AT_rich Low_complexity Low_complexity 1 22 0 183 419 77 8 chr13 70682653 70682770 -49062128 - MIR SINE MIR -64 144 20 391 302 110 41 chr13 70682937 70683182 -49061716 + MIR SINE MIR 1 262 0 337 299 44 44 chr13 70683275 70683412 -49061486 - L2 LINE L2 0 3313 3177 370 340 142 19 chr13 70683660 70683872 -49061026 - L3 LINE CR1 -9 1568 1331 267 31 0 0 chr13 70683937 70683969 -49060929 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 56 0 0 chr13 70684613 70684649 -49060249 + AT_rich Low_complexity Low_complexity 1 36 0 35 0 0 0 chr13 70685185 70685220 -49059678 + AT_rich Low_complexity Low_complexity 1 35 0 2672 17 0 0 chr13 70686529 70686825 -49058073 - AluYb8 SINE Alu -11 307 12 1449 249 14 53 chr13 70688798 70689000 -49055898 - MLT1E2 LTR MaLR 0 626 418 1755 174 16 10 chr13 70689000 70689310 -49055588 - AluSx SINE Alu 0 312 1 1449 249 14 53 chr13 70689310 70689544 -49055354 - MLT1E2 LTR MaLR -208 418 207 305 305 38 0 chr13 70689626 70689731 -49055167 - MLT1E2 LTR MaLR -452 172 64 246 275 43 0 chr13 70689671 70689740 -49055158 - MLT2D LTR ERVL -308 106 35 * 2208 90 3 13 chr13 70689973 70690272 -49054626 - AluSg SINE Alu -14 296 1 523 345 55 29 chr13 70693305 70693925 -49050973 + HERVL LTR ERVL 4241 4960 -804 2257 108 0 6 chr13 70695087 70695402 -49049496 - AluSp SINE Alu 0 313 1 3037 62 3 0 chr13 70695829 70696218 -49048680 + L1PA4 LINE L1 5763 6152 -3 2574 185 22 35 chr13 70696383 70696930 -49047968 + MER101B LTR ERV1 31 570 0 2552 62 0 0 chr13 70696933 70697242 -49047656 - AluSc SINE Alu 0 309 1 23 54 0 0 chr13 70697334 70697371 -49047527 + AT_rich Low_complexity Low_complexity 1 37 0 29 47 0 0 chr13 70697434 70697477 -49047421 + AT_rich Low_complexity Low_complexity 1 43 0 426 296 48 0 chr13 70697952 70698077 -49046821 - MIR SINE MIR -131 131 1 256 263 121 0 chr13 70698955 70699054 -49045844 - MIR SINE MIR -46 216 106 433 217 129 110 chr13 70700589 70700861 -49044037 - MER20B DNA MER1_type -321 462 186 31 88 0 0 chr13 70702209 70702289 -49042609 + AT_rich Low_complexity Low_complexity 1 80 0 206 132 19 38 chr13 70702352 70702405 -49042493 + (TA)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr13 70702834 70702855 -49042043 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr13 70703149 70703176 -49041722 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 40 37 0 0 chr13 70703524 70703578 -49041320 + AT_rich Low_complexity Low_complexity 1 54 0 217 247 71 59 chr13 70703786 70703871 -49041027 - L2 LINE L2 -10 3303 3218 1032 211 111 17 chr13 70704032 70704392 -49040506 - LTR37A LTR ERV1 -14 412 19 191 125 25 0 chr13 70704406 70704446 -49040452 + CT-rich Low_complexity Low_complexity 2 42 0 24 0 0 0 chr13 70705852 70705876 -49039022 + AT_rich Low_complexity Low_complexity 1 24 0 3354 91 2 2 chr13 70707106 70707558 -49037340 + MLT2A2 LTR ERVL 1 452 -1 313 280 116 26 chr13 70708141 70708373 -49036525 + L1MC4a LINE L1 5307 5559 -2249 7547 28 5 0 chr13 70708373 70710056 -49034842 + L1PA4 LINE L1 4469 6155 0 301 292 58 8 chr13 70710201 70710321 -49034577 + L1MC4a LINE L1 5847 5972 -1836 272 229 29 0 chr13 70710332 70710402 -49034496 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 27 49 0 0 chr13 70710523 70710564 -49034334 + AT_rich Low_complexity Low_complexity 1 41 0 679 271 61 0 chr13 70710736 70710917 -49033981 + L1MC4a LINE L1 6642 6833 -975 41 48 0 0 chr13 70711508 70711570 -49033328 + AT_rich Low_complexity Low_complexity 1 62 0 1383 186 3 65 chr13 70715226 70715548 -49029350 - AluJo SINE Alu 0 302 1 7155 184 184 3 chr13 70716997 70718483 -49026415 + MER52A LTR ERV1 1 1755 0 330 335 124 34 chr13 70718483 70718692 -49026206 + MIR SINE MIR 9 236 -26 501 234 117 76 chr13 70718772 70719217 -49025681 + LTR37B LTR ERV1 1 463 -5 3305 220 60 36 chr13 70719768 70719968 -49024930 + L1MB8 LINE L1 4509 4703 -1475 2438 82 0 0 chr13 70719968 70720273 -49024625 + AluY SINE Alu 1 305 -6 3305 220 60 36 chr13 70720273 70721253 -49023645 + L1MB8 LINE L1 4703 5734 -444 2863 160 19 24 chr13 70721253 70721785 -49023113 + LTR26B LTR ERV1 3 531 0 3305 220 60 36 chr13 70721785 70722241 -49022657 + L1MB8 LINE L1 5734 6178 0 23 0 0 0 chr13 70722663 70722686 -49022212 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 70722954 70722975 -49021923 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr13 70723191 70723216 -49021682 + AT_rich Low_complexity Low_complexity 1 25 0 267 287 35 23 chr13 70725386 70725473 -49019425 - L2 LINE L2 0 3313 3226 468 311 80 9 chr13 70727260 70727472 -49017426 + MIR SINE MIR 7 233 -29 230 250 0 0 chr13 70727674 70727726 -49017172 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 246 395 63 0 chr13 70727876 70728114 -49016784 + L2 LINE L2 2720 2972 -342 348 83 0 0 chr13 70728260 70728308 -49016590 + (TA)n Simple_repeat Simple_repeat 2 49 0 199 316 13 38 chr13 70728434 70728513 -49016385 + L2 LINE L2 3169 3245 -27 606 335 32 56 chr13 70728681 70729108 -49015790 - L2 LINE L2 -98 3215 2797 2074 134 0 13 chr13 70729609 70729914 -49014984 + AluSx SINE Alu 1 301 -11 418 302 0 17 chr13 70730253 70730369 -49014529 - MLT2E LTR ERVL -464 164 51 566 314 102 40 chr13 70730648 70731020 -49013878 - L3 LINE CR1 -314 1263 869 23 33 0 0 chr13 70731801 70731831 -49013067 + AT_rich Low_complexity Low_complexity 1 30 0 205 222 19 0 chr13 70732341 70732395 -49012503 + (TAA)n Simple_repeat Simple_repeat 2 56 0 468 51 0 0 chr13 70732615 70732623 -49012275 + (TA)n Simple_repeat Simple_repeat 1 67 0 468 51 0 0 chr13 70732623 70732682 -49012216 + (TA)n Simple_repeat Simple_repeat 2 60 0 803 176 94 13 chr13 70732964 70733123 -49011775 + MER21B LTR ERV1 330 501 -362 250 247 13 13 chr13 70733900 70733977 -49010921 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 198 0 0 0 chr13 70734095 70734117 -49010781 + (A)n Simple_repeat Simple_repeat 1 22 0 3795 221 30 17 chr13 70734379 70735368 -49009530 + L1 LINE L1 2601 3602 -2544 21 57 0 0 chr13 70735462 70735497 -49009401 + AT_rich Low_complexity Low_complexity 1 35 0 1076 294 96 27 chr13 70735924 70736583 -49008315 - L1MC4 LINE L1 -59 7983 7280 22 35 0 0 chr13 70736783 70736812 -49008086 + AT_rich Low_complexity Low_complexity 1 29 0 2393 226 33 11 chr13 70737298 70737848 -49007050 + MER68 LTR ERV1 1 562 0 748 271 29 0 chr13 70737881 70738125 -49006773 + L1ME1 LINE L1 4502 4752 -1394 233 291 91 17 chr13 70738207 70738278 -49006620 + L1ME1 LINE L1 4963 5027 -1119 2153 84 40 3 chr13 70738278 70738574 -49006324 - AluSg SINE Alu -2 308 2 233 291 91 17 chr13 70738574 70738677 -49006221 + L1ME1 LINE L1 5027 5150 -996 451 132 0 66 chr13 70738685 70738776 -49006122 + AluJ/FRAM SINE Alu 220 304 -8 1437 260 182 30 chr13 70738784 70739648 -49005250 + L1ME1 LINE L1 5175 6161 -5 1518 199 9 25 chr13 70739799 70740116 -49004782 - AluJo SINE Alu 0 312 1 506 115 13 0 chr13 70740185 70740263 -49004635 + MADE1 DNA Mariner 1 79 -1 491 0 17 0 chr13 70740318 70740377 -49004521 + (TG)n Simple_repeat Simple_repeat 1 60 0 311 256 120 8 chr13 70740398 70740531 -49004367 + LTR33 LTR ERVL 372 519 -2 366 301 73 23 chr13 70741527 70741746 -49003152 - MLT1L LTR MaLR -239 376 147 3166 186 71 19 chr13 70742301 70743038 -49001860 - L1MC3 LINE L1 -1 7784 7010 23 0 0 0 chr13 70746439 70746462 -48998436 + AT_rich Low_complexity Low_complexity 1 23 0 194 250 0 19 chr13 70746870 70746922 -48997976 + MIR SINE MIR 156 206 -56 456 313 42 16 chr13 70747194 70747386 -48997512 - MIR SINE MIR -3 259 63 31 44 0 0 chr13 70748195 70748240 -48996658 + AT_rich Low_complexity Low_complexity 1 45 0 706 93 3 46 chr13 70749172 70749498 -48995400 + (TA)n Simple_repeat Simple_repeat 1 311 0 358 253 0 0 chr13 70750695 70750770 -48994128 + MER47A DNA MER2_type 1 75 -291 226 250 0 54 chr13 70750773 70750829 -48994069 - MER47A DNA MER2_type -3 363 311 216 0 0 0 chr13 70751541 70751565 -48993333 + (TAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr13 70752033 70752063 -48992835 + AT_rich Low_complexity Low_complexity 1 30 0 1151 247 50 65 chr13 70752762 70753319 -48991579 + MER67C LTR ERV1 1 512 -2 637 330 103 41 chr13 70755095 70755970 -48988928 - L1MEc LINE L1 -1303 4912 3984 308 266 64 37 chr13 70755998 70756299 -48988599 - L1MEc LINE L1 -2411 3804 3494 739 213 7 7 chr13 70756373 70756528 -48988370 - FRAM SINE Alu -21 155 1 254 313 14 1 chr13 70756752 70756911 -48987987 - MER58 DNA MER1_type -16 2404 26 369 280 60 99 chr13 70757020 70757348 -48987550 - L1MEc LINE L1 -4549 1847 1540 1443 241 7 0 chr13 70757348 70757642 -48987256 - AluJo SINE Alu -14 298 3 369 280 60 99 chr13 70757642 70757767 -48987131 - L1MEc LINE L1 -4856 1540 1412 338 245 56 66 chr13 70758047 70758243 -48986655 - L1MEc LINE L1 -5256 949 756 11594 159 42 58 chr13 70758436 70759917 -48984981 + Tigger1 DNA MER2_type 1 1505 -913 2671 205 10 10 chr13 70759917 70760497 -48984401 - L1PB4 LINE L1 -2 6154 5575 11594 159 42 58 chr13 70760497 70760912 -48983986 + Tigger1 DNA MER2_type 1505 1925 -493 1936 144 10 3 chr13 70760912 70761217 -48983681 + AluSx SINE Alu 5 311 -1 11594 159 42 58 chr13 70761217 70761777 -48983121 + Tigger1 DNA MER2_type 1925 2418 0 25 90 0 0 chr13 70761839 70761906 -48982992 + AT_rich Low_complexity Low_complexity 1 67 0 200 219 0 0 chr13 70761913 70761954 -48982944 + (TATG)n Simple_repeat Simple_repeat 4 44 0 390 258 21 0 chr13 70761956 70762053 -48982845 + L1MC4a LINE L1 6731 6829 -979 * 716 66 21 7 chr13 70762026 70762134 -48982764 - L1PA3 LINE L1 -318 5837 5742 441 18 0 0 chr13 70762134 70762190 -48982708 + L1PA4 LINE L1 6098 6153 -2 24 0 0 0 chr13 70762536 70762560 -48982338 + AT_rich Low_complexity Low_complexity 1 24 0 232 293 155 0 chr13 70763987 70764103 -48980795 + LTR16A1 LTR ERVL 221 354 -103 383 336 83 42 chr13 70764355 70764596 -48980302 + MIR SINE MIR 2 252 -10 240 35 0 0 chr13 70764600 70764629 -48980269 + (CAT)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr13 70766645 70766679 -48978219 + AT_rich Low_complexity Low_complexity 1 34 0 36 23 0 0 chr13 70766748 70766791 -48978107 + AT_rich Low_complexity Low_complexity 1 43 0 1237 189 215 0 chr13 70767130 70767437 -48977461 + MER93b LTR ERV1 1 373 0 29 60 0 0 chr13 70767536 70767586 -48977312 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr13 70768177 70768212 -48976686 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 70768440 70768462 -48976436 + AT_rich Low_complexity Low_complexity 1 22 0 244 167 0 33 chr13 70768745 70768805 -48976093 + A-rich Low_complexity Low_complexity 3 60 0 216 0 0 0 chr13 70769113 70769137 -48975761 + (CA)n Simple_repeat Simple_repeat 1 24 0 224 145 0 48 chr13 70820156 70820218 -48924680 + (C)n Simple_repeat Simple_repeat 1 59 0 847 324 83 52 chr13 70820380 70820878 -48924020 - ERVL LTR ERVL -2879 2885 2404 2037 136 0 10 chr13 70820878 70821186 -48923712 - AluSc SINE Alu -4 305 1 847 324 83 52 chr13 70821186 70821599 -48923299 - ERVL LTR ERVL -3360 2404 1909 642 236 24 77 chr13 70821951 70822159 -48922739 - MER58A DNA MER1_type 0 224 28 24 32 0 0 chr13 70822368 70822399 -48922499 + AT_rich Low_complexity Low_complexity 1 31 0 272 312 57 14 chr13 70823445 70823586 -48921312 - LTR33 LTR ERVL -63 458 312 225 0 0 0 chr13 70823719 70823744 -48921154 + (T)n Simple_repeat Simple_repeat 1 25 0 2065 129 0 0 chr13 70823748 70824034 -48920864 + AluSx SINE Alu 6 291 -21 43 47 0 0 chr13 70824036 70824100 -48920798 + AT_rich Low_complexity Low_complexity 1 64 0 1664 208 16 11 chr13 70824105 70824484 -48920414 - L1MB1 LINE L1 -4 6164 5784 228 171 54 0 chr13 70824492 70824603 -48920295 + (TA)n Simple_repeat Simple_repeat 2 118 0 1318 195 8 8 chr13 70824616 70824872 -48920026 - L1MB1 LINE L1 -533 5801 5546 457 354 29 7 chr13 70824872 70825149 -48919749 + ERVL LTR ERVL 2949 3231 -2423 254 294 98 0 chr13 70825298 70825400 -48919498 + ERVL LTR ERVL 3430 3541 -2113 738 315 82 27 chr13 70825452 70825782 -48919116 - MLT1E LTR MaLR -3 590 243 182 41 61 61 chr13 70825933 70825982 -48918916 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 643 250 38 6 chr13 70825982 70826142 -48918756 - MLT1E LTR MaLR -420 173 9 465 330 80 0 chr13 70826328 70826516 -48918382 + ERVL LTR ERVL 4980 5182 -582 1317 214 15 0 chr13 70826702 70826968 -48917930 + MSTB LTR MaLR 1 270 -156 381 359 69 4 chr13 70826970 70827215 -48917683 + L1M4 LINE L1 2270 2530 -3616 409 319 119 61 chr13 70827360 70828275 -48916623 + L1M4 LINE L1 2739 3706 -2440 748 119 30 0 chr13 70828375 70828543 -48916355 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 422 293 107 78 chr13 70828738 70829185 -48915713 + L1MC/D LINE L1 553 1012 -5384 483 277 45 29 chr13 70829257 70829499 -48915399 + L1MC/D LINE L1 1037 1282 -4935 329 316 119 21 chr13 70829507 70830042 -48914856 + L1MC/D LINE L1 4972 5555 -748 26 30 0 0 chr13 70830462 70830495 -48914403 + AT_rich Low_complexity Low_complexity 1 33 0 232 341 0 0 chr13 70830633 70830715 -48914183 - L2 LINE L2 -652 2662 2581 27 62 0 0 chr13 70831680 70831728 -48913170 + AT_rich Low_complexity Low_complexity 1 48 0 1330 129 40 22 chr13 70832185 70832410 -48912488 - MER30 DNA MER1_type 0 230 2 2105 189 9 16 chr13 70832678 70833118 -48911780 - L1MB1 LINE L1 -28 6161 5725 1150 221 28 25 chr13 70833123 70833445 -48911453 - L1MB1 LINE L1 -2328 3818 3496 377 287 107 20 chr13 70833450 70833600 -48911298 - L1MC3 LINE L1 -357 7428 7266 351 158 0 0 chr13 70834225 70834282 -48910616 + Alu SINE Alu 236 292 -8 21 57 0 0 chr13 70834796 70834831 -48910067 + AT_rich Low_complexity Low_complexity 1 35 0 237 313 53 30 chr13 70836123 70836254 -48908644 - L2 LINE L2 -215 3057 2924 247 272 70 53 chr13 70836437 70836551 -48908347 + MIR SINE MIR 52 167 -95 246 316 79 18 chr13 70836563 70836677 -48908221 - L2 LINE L2 0 3313 3193 1096 322 131 63 chr13 70836834 70837435 -48907463 - L2 LINE L2 -339 2975 2416 2162 107 3 3 chr13 70837435 70837724 -48907174 + AluSq SINE Alu 1 289 -24 284 0 0 27 chr13 70837731 70837768 -48907130 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 1096 322 131 63 chr13 70837768 70838166 -48906732 - L2 LINE L2 -903 2411 1900 2070 119 50 44 chr13 70838651 70839012 -48905886 - THE1B LTR MaLR -1 363 1 2095 89 28 3 chr13 70839464 70839746 -48905152 + AluY SINE Alu 1 289 -22 21 82 0 0 chr13 70839746 70839795 -48905103 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr13 70840930 70840961 -48903937 + AT_rich Low_complexity Low_complexity 1 31 0 1726 176 55 3 chr13 70841960 70842289 -48902609 - MER7A DNA MER2_type -2 344 1 1907 201 3 0 chr13 70842302 70842666 -48902232 + MER47A DNA MER2_type 2 366 0 6037 209 121 30 chr13 70843057 70844511 -48900387 + MER52A LTR ERV1 217 1700 -55 563 358 53 0 chr13 70844988 70845231 -48899667 - MIR SINE MIR 0 262 7 686 281 50 10 chr13 70846370 70846569 -48898329 - MIR SINE MIR -10 252 46 1313 190 87 69 chr13 70846627 70847016 -48897882 + MSTD LTR MaLR 1 396 0 192 200 0 0 chr13 70847632 70847672 -48897226 + (TA)n Simple_repeat Simple_repeat 2 41 0 4901 206 87 4 chr13 70847715 70848675 -48896223 - L1MC1 LINE L1 -11 6322 5443 189 74 0 0 chr13 70848675 70848702 -48896196 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4901 206 87 4 chr13 70848702 70849117 -48895781 - L1MC1 LINE L1 -890 5443 4828 321 26 0 0 chr13 70849117 70849155 -48895743 + (TG)n Simple_repeat Simple_repeat 2 39 0 4901 206 87 4 chr13 70849155 70849191 -48895707 - L1MC1 LINE L1 -1505 4828 4796 350 286 36 84 chr13 70850171 70850668 -48894230 - L1MC4 LINE L1 -137 7905 7324 318 102 20 0 chr13 70850926 70850975 -48893923 - 5S rRNA rRNA -71 50 1 310 231 22 11 chr13 70850986 70851077 -48893821 - Charlie2a DNA MER1_type -1203 1659 1568 208 167 24 0 chr13 70851195 70851237 -48893661 + GA-rich Low_complexity Low_complexity 2 44 0 258 179 57 123 chr13 70851258 70851364 -48893534 - Charlie2b DNA MER1_type -2113 669 571 250 240 73 52 chr13 70851358 70851454 -48893444 - Charlie2b DNA MER1_type -2454 328 231 * 447 134 0 0 chr13 70851465 70851547 -48893351 + (TC)n Simple_repeat Simple_repeat 1 82 0 491 246 50 60 chr13 70851552 70851751 -48893147 - Charlie2b DNA MER1_type -2659 203 7 264 266 181 0 chr13 70851780 70851874 -48893024 - MIR SINE MIR 0 262 152 249 216 23 23 chr13 70852529 70852617 -48892281 + (TA)n Simple_repeat Simple_repeat 1 88 0 229 348 43 0 chr13 70853350 70853442 -48891456 + MIR SINE MIR 45 140 -122 360 0 0 0 chr13 70853550 70853590 -48891308 + (TG)n Simple_repeat Simple_repeat 2 41 0 207 69 0 0 chr13 70853591 70853620 -48891278 + (GA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr13 70853984 70854008 -48890890 + AT_rich Low_complexity Low_complexity 1 24 0 329 141 62 0 chr13 70854578 70854642 -48890256 + MLT1J2 LTR MaLR 362 429 -21 1647 197 7 17 chr13 70855541 70855841 -48889057 + AluJb SINE Alu 1 297 -15 13360 48 7 0 chr13 70856268 70857973 -48886925 + L1P LINE L1 1806 3521 -2625 233 297 11 11 chr13 70857974 70858065 -48886833 + MLT1I LTR MaLR 87 177 -232 389 316 40 53 chr13 70858807 70859032 -48885866 + MIR SINE MIR 20 241 -21 244 136 45 61 chr13 70859699 70859765 -48885133 + MADE1 DNA Mariner 4 68 -12 2044 71 3 61 chr13 70860119 70860451 -48884447 - AluY SINE Alu 0 315 1 1889 138 30 7 chr13 70860451 70860754 -48884144 - AluSx SINE Alu -1 311 1 25 51 0 0 chr13 70861895 70861934 -48882964 + AT_rich Low_complexity Low_complexity 1 39 0 2409 110 41 15 chr13 70861987 70862379 -48882519 + L1MA3 LINE L1 5691 6092 -213 21 0 0 0 chr13 70863077 70863098 -48881800 + AT_rich Low_complexity Low_complexity 1 21 0 301 277 75 25 chr13 70863394 70863553 -48881345 - L1ME2 LINE L1 -213 5951 5785 207 0 0 0 chr13 70863679 70863702 -48881196 + (T)n Simple_repeat Simple_repeat 1 23 0 255 270 104 43 chr13 70864076 70864239 -48880659 - L1M2 LINE L1 -4280 2569 2397 534 309 89 58 chr13 70864367 70864830 -48880068 - L1MEd LINE L1 -4883 1236 760 2510 232 27 57 chr13 70864837 70865426 -48879472 - L1MD2 LINE L1 -294 6459 5854 2304 97 0 7 chr13 70865426 70865734 -48879164 - AluSq SINE Alu -7 306 1 2510 232 27 57 chr13 70865734 70865900 -48878998 - L1MD2 LINE L1 -899 5854 5729 1605 174 26 33 chr13 70865900 70866082 -48878816 - AluJo SINE Alu -9 303 122 186 43 0 0 chr13 70866082 70866105 -48878793 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1605 174 26 33 chr13 70866105 70866227 -48878671 - AluJo SINE Alu -190 122 1 2510 232 27 57 chr13 70866227 70866399 -48878499 - L1MD2 LINE L1 -1024 5729 5553 607 225 78 25 chr13 70866401 70866481 -48878417 - L1MD2 LINE L1 -4031 2509 2435 1595 183 0 7 chr13 70866481 70866760 -48878138 - AluSx SINE Alu -10 302 26 607 225 78 25 chr13 70866760 70867113 -48877785 - L1MD2 LINE L1 -4105 2435 2028 * 988 157 16 27 chr13 70867112 70867297 -48877601 + L1PA16 LINE L1 5961 6143 -23 4283 261 54 52 chr13 70867312 70869047 -48875851 - L1MD2 LINE L1 -4638 1902 165 267 122 0 0 chr13 70869114 70869163 -48875735 + (TG)n Simple_repeat Simple_repeat 2 50 0 527 330 94 44 chr13 70869234 70869253 -48875645 + L2 LINE L2 2517 2534 -779 6056 154 63 10 chr13 70869253 70869767 -48875131 + Tigger3b DNA MER2_type 1 486 -2542 1855 146 7 0 chr13 70869767 70870048 -48874850 - AluSx SINE Alu -29 283 1 6056 154 63 10 chr13 70870048 70870702 -48874196 + Tigger3b DNA MER2_type 486 1231 0 527 330 94 44 chr13 70870702 70871218 -48873680 + L2 LINE L2 2534 3075 -238 284 338 58 0 chr13 70871734 70871873 -48873025 + MIR SINE MIR 33 179 -83 28 48 0 0 chr13 70872371 70872413 -48872485 + AT_rich Low_complexity Low_complexity 1 42 0 194 0 39 0 chr13 70872413 70872439 -48872459 + (CA)n Simple_repeat Simple_repeat 2 28 0 309 335 45 22 chr13 70873137 70873316 -48871582 - MIR SINE MIR -60 202 20 1817 114 3 85 chr13 70873321 70873638 -48871260 - AluSx SINE Alu -1 311 21 207 269 0 0 chr13 70873927 70873979 -48870919 - L3 LINE CR1 -488 1089 1038 192 40 0 0 chr13 70874240 70874265 -48870633 + (TG)n Simple_repeat Simple_repeat 2 26 0 1722 156 61 119 chr13 70875354 70875714 -48869184 - Charlie3 DNA MER1_type 0 2712 1 234 0 0 0 chr13 70876673 70876699 -48868199 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 21 71 0 0 chr13 70876823 70876865 -48868033 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 70877220 70877241 -48867657 + AT_rich Low_complexity Low_complexity 1 21 0 239 347 128 5 chr13 70878410 70878606 -48866292 + L3 LINE CR1 1357 1576 -1 30 27 0 0 chr13 70879462 70879499 -48865399 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 70879717 70879738 -48865160 + AT_rich Low_complexity Low_complexity 1 21 0 537 258 108 12 chr13 70881171 70881411 -48863487 - L1ME3A LINE L1 -233 5937 5675 12573 178 46 29 chr13 70881415 70884342 -48860556 + L1MA3 LINE L1 2131 5006 -2718 2852 13 0 0 chr13 70884342 70884658 -48860240 + AluYb8 SINE Alu 1 316 -2 12573 178 46 29 chr13 70884658 70885999 -48858899 + L1MA3 LINE L1 5006 6323 -1401 1809 160 3 38 chr13 70885999 70886318 -48858580 - AluSx SINE Alu -4 308 1 12573 178 46 29 chr13 70886318 70886481 -48858417 + L1MA3 LINE L1 6323 6482 -1242 2012 140 117 31 chr13 70886481 70886873 -48858025 - MSTA LTR MaLR -2 426 1 12573 178 46 29 chr13 70886873 70887411 -48857487 + L1MA3 LINE L1 6482 7206 -518 2104 113 3 7 chr13 70887411 70887711 -48857187 + AluSq SINE Alu 1 299 -14 12573 178 46 29 chr13 70887711 70887963 -48856935 + L1MA3 LINE L1 7206 7452 -272 1663 186 0 3 chr13 70888652 70888975 -48855923 - L1MA5 LINE L1 0 6300 5979 521 59 0 0 chr13 70889377 70889445 -48855453 + L1PA6 LINE L1 6078 6145 -9 22 56 0 0 chr13 70890543 70890579 -48854319 + AT_rich Low_complexity Low_complexity 1 36 0 260 342 101 0 chr13 70891447 70891526 -48853372 + L2 LINE L2 3148 3234 -38 317 300 58 0 chr13 70891693 70891813 -48853085 - L1ME3 LINE L1 -46 6116 5990 186 435 12 0 chr13 70893180 70893265 -48851633 - L2 LINE L2 -9 3263 3178 200 282 94 0 chr13 70893833 70893918 -48850980 - L2 LINE L2 -12 3301 3209 315 240 96 39 chr13 70894101 70894205 -48850693 - MIR SINE MIR -14 248 139 252 0 0 0 chr13 70894485 70894513 -48850385 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2614 39 0 0 chr13 70894910 70895221 -48849677 + AluY SINE Alu 1 311 0 3038 212 62 105 chr13 70895658 70896730 -48848168 + L1MCb LINE L1 263 1605 -5140 1936 100 57 0 chr13 70896730 70897011 -48847887 + AluY SINE Alu 1 297 -14 3038 212 62 105 chr13 70897011 70897551 -48847347 + L1MCb LINE L1 1605 2166 -4579 1088 229 113 3 chr13 70897587 70897967 -48846931 + L1MCb LINE L1 2192 2613 -3951 24 0 0 0 chr13 70897971 70897995 -48846903 + AT_rich Low_complexity Low_complexity 1 24 0 4200 265 71 27 chr13 70898053 70899813 -48845085 + L1MCb LINE L1 2739 4575 -1989 4874 48 5 0 chr13 70899813 70900412 -48844486 + L1PA5 LINE L1 5551 6152 -2 1131 188 13 22 chr13 70900422 70900646 -48844252 + AluJo SINE Alu 87 308 -4 2230 94 0 3 chr13 70900671 70900969 -48843929 - AluSp SINE Alu -15 298 2 298 311 111 28 chr13 70900992 70901172 -48843726 + MER102b DNA MER1_type 124 318 -23 500 204 0 0 chr13 70901401 70901499 -48843399 + MER103 DNA DNA 1 98 -68 229 278 46 0 chr13 70901616 70901724 -48843174 + L1MCb LINE L1 4551 4663 -1901 1015 169 54 42 chr13 70901824 70902084 -48842814 - LTR48 LTR ERV1 0 787 525 296 104 125 0 chr13 70902127 70902175 -48842723 - LTR48 LTR ERV1 -402 385 332 378 221 77 0 chr13 70902177 70902281 -48842617 + L1MC2 LINE L1 4564 4675 -1889 218 176 39 0 chr13 70902348 70902399 -48842499 + (TA)n Simple_repeat Simple_repeat 2 54 0 233 194 32 0 chr13 70902407 70902469 -48842429 - LTR66 LTR ERVL -172 438 375 456 221 11 28 chr13 70902469 70902650 -48842248 + (TA)n Simple_repeat Simple_repeat 2 179 0 3928 238 62 12 chr13 70902676 70903466 -48841432 + L1MC2 LINE L1 4735 5484 -1278 219 36 0 0 chr13 70903466 70903494 -48841404 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3928 238 62 12 chr13 70903494 70904624 -48840274 + L1MC2 LINE L1 5484 6754 -8 273 333 0 65 chr13 70905436 70905559 -48839339 + MIR3 SINE MIR 70 184 -24 24 0 0 0 chr13 70905610 70905634 -48839264 + AT_rich Low_complexity Low_complexity 1 24 0 369 349 24 6 chr13 70906068 70906237 -48838661 + MER5B DNA MER1_type 3 174 -4 641 300 39 13 chr13 70906486 70906716 -48838182 - MIR SINE MIR -3 259 24 1732 144 26 13 chr13 70907445 70907751 -48837147 - AluSx SINE Alu -2 310 1 393 333 9 0 chr13 70907978 70908083 -48836815 - MER81 DNA DNA 0 114 9 1160 279 20 59 chr13 70908085 70908493 -48836405 - MLT1E LTR MaLR -2 591 200 674 316 26 13 chr13 70908505 70908739 -48836159 + MLT1E LTR MaLR 355 591 -2 1843 157 147 5 chr13 70908750 70909125 -48835773 + MSTA LTR MaLR 1 428 0 468 0 0 0 chr13 70909169 70909221 -48835677 + (CA)n Simple_repeat Simple_repeat 1 52 0 516 125 39 29 chr13 70909467 70909571 -48835327 - L1PA16 LINE L1 -9 6157 6053 1526 172 25 14 chr13 70909571 70909858 -48835040 + L1PA16 LINE L1 5738 6031 -135 553 252 47 0 chr13 70910189 70910316 -48834582 - FLAM_A SINE Alu 0 133 1 384 156 0 0 chr13 70910656 70910733 -48834165 + L1MA7 LINE L1 6207 6283 -8 24 0 0 0 chr13 70910794 70910818 -48834080 + AT_rich Low_complexity Low_complexity 1 24 0 190 315 19 0 chr13 70911087 70911141 -48833757 + L2 LINE L2 3242 3296 -17 2239 68 3 53 chr13 70911303 70911626 -48833272 - AluY SINE Alu -4 307 1 197 148 0 37 chr13 70911956 70912010 -48832888 + (TATG)n Simple_repeat Simple_repeat 2 53 0 238 186 29 29 chr13 70912017 70912087 -48832811 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 24 32 0 0 chr13 70912339 70912370 -48832528 + AT_rich Low_complexity Low_complexity 1 31 0 2090 112 6 10 chr13 70912434 70912747 -48832151 + AluSx SINE Alu 1 312 0 1905 149 33 0 chr13 70913153 70913512 -48831386 + AluSx SINE Alu 1 369 0 208 354 100 23 chr13 70913826 70914176 -48830722 - L2 LINE L2 -584 2730 2354 1310 119 5 10 chr13 70914747 70914949 -48829949 + L1PA10 LINE L1 5957 6157 -11 250 109 0 22 chr13 70915027 70915073 -48829825 - L1MA9 LINE L1 0 6312 6268 180 0 0 0 chr13 70915078 70915098 -48829800 + (CAA)n Simple_repeat Simple_repeat 2 21 0 265 302 35 17 chr13 70915114 70915230 -48829668 + MIR SINE MIR 84 201 -61 1433 233 0 13 chr13 70915263 70915576 -48829322 + AluJo SINE Alu 1 309 -3 248 197 15 15 chr13 70916136 70916202 -48828696 + (TTG)n Simple_repeat Simple_repeat 3 68 0 24 32 0 0 chr13 70916441 70916472 -48828426 + AT_rich Low_complexity Low_complexity 1 31 0 201 323 0 20 chr13 70918121 70918220 -48826678 + CT-rich Low_complexity Low_complexity 2 98 0 863 239 162 8 chr13 70918869 70919128 -48825770 + MLT1E LTR MaLR 295 593 0 415 273 115 36 chr13 70919629 70919794 -48825104 - MER3 DNA MER1_type -11 198 21 46 33 0 0 chr13 70919841 70919901 -48824997 + AT_rich Low_complexity Low_complexity 1 60 0 209 210 48 0 chr13 70920283 70920345 -48824553 + (TAA)n Simple_repeat Simple_repeat 2 66 0 23 33 0 0 chr13 70920824 70920854 -48824044 + AT_rich Low_complexity Low_complexity 1 30 0 811 176 31 13 chr13 70921049 70921208 -48823690 + FRAM SINE Alu 1 162 -4 21 0 0 0 chr13 70921208 70921229 -48823669 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 70921257 70921285 -48823613 + AT_rich Low_complexity Low_complexity 1 28 0 360 331 29 12 chr13 70922207 70922379 -48822519 - MER45A DNA AcHobo 0 178 4 5554 161 6 14 chr13 70922410 70923410 -48821488 - L1MA4 LINE L1 -6 6294 5303 1187 240 103 24 chr13 70926742 70927334 -48817564 - L1M4 LINE L1 -1326 4820 4182 864 110 0 8 chr13 70927369 70927487 -48817411 - AluSg SINE Alu -180 130 14 2297 89 0 0 chr13 70928303 70928595 -48816303 - AluSq SINE Alu -21 292 1 23 0 0 0 chr13 70929206 70929229 -48815669 + AT_rich Low_complexity Low_complexity 1 23 0 331 355 50 50 chr13 70929465 70929707 -48815191 + MIR SINE MIR 9 250 -12 238 330 170 10 chr13 70929731 70929831 -48815067 - L2 LINE L2 0 3272 3157 524 327 61 43 chr13 70930352 70930844 -48814054 - L2 LINE L2 -626 2688 2188 23 0 0 0 chr13 70932562 70932585 -48812313 + AT_rich Low_complexity Low_complexity 1 23 0 36 40 0 0 chr13 70932836 70932886 -48812012 + AT_rich Low_complexity Low_complexity 1 50 0 233 220 0 20 chr13 70932933 70932983 -48811915 + (CATA)n Simple_repeat Simple_repeat 4 52 0 237 163 0 0 chr13 70934301 70934350 -48810548 + GA-rich Low_complexity Low_complexity 3 51 0 343 324 98 81 chr13 70934593 70935174 -48809724 - L1M2 LINE L1 -5716 1133 543 231 88 0 0 chr13 70935387 70935421 -48809477 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 25 0 0 0 chr13 70936790 70936815 -48808083 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr13 70936865 70936903 -48807995 + AT_rich Low_complexity Low_complexity 1 38 0 385 266 22 22 chr13 70937353 70937492 -48807406 + GA-rich Low_complexity Low_complexity 2 140 0 2234 149 81 0 chr13 70938125 70938521 -48806377 - MSTC LTR MaLR 0 428 1 1898 157 131 16 chr13 70938793 70939175 -48805723 - MSTA LTR MaLR -2 426 1 29 94 0 0 chr13 70939178 70939263 -48805635 + AT_rich Low_complexity Low_complexity 1 85 0 2195 114 3 0 chr13 70939786 70940085 -48804813 - AluSg SINE Alu -10 300 1 211 222 19 0 chr13 70940144 70940198 -48804700 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 249 83 0 0 chr13 70941893 70941929 -48802969 + (TG)n Simple_repeat Simple_repeat 2 37 0 1331 220 62 49 chr13 70941929 70942315 -48802583 - MSTD LTR MaLR -5 391 1 196 297 119 50 chr13 70942444 70942545 -48802353 + L2 LINE L2 3146 3253 -19 844 312 46 53 chr13 70942945 70943677 -48801221 - L2 LINE L2 -1 3312 2580 684 198 36 53 chr13 70943939 70944227 -48800671 + L1MA9 LINE L1 6022 6275 -37 466 331 44 0 chr13 70944456 70944592 -48800306 + MIR SINE MIR 2 143 -119 23 0 0 0 chr13 70945454 70945477 -48799421 + AT_rich Low_complexity Low_complexity 1 23 0 561 68 0 0 chr13 70945701 70945774 -48799124 - AluSp/q SINE Alu -15 298 226 1637 202 11 14 chr13 70946487 70946849 -48798049 + MER46B DNA MER2_type 1 236 0 22 0 0 0 chr13 70947285 70947307 -48797591 + AT_rich Low_complexity Low_complexity 1 22 0 200 200 0 117 chr13 70947357 70947417 -48797481 - L2 LINE L2 0 3272 3220 3066 42 3 0 chr13 70947566 70947948 -48796950 + L1PA4 LINE L1 5770 6152 -3 201 169 0 62 chr13 70947989 70948054 -48796844 + A-rich Low_complexity Low_complexity 3 63 0 27 62 0 0 chr13 70948822 70948870 -48796028 + AT_rich Low_complexity Low_complexity 1 48 0 399 325 90 24 chr13 70949729 70949941 -48794957 + MIR SINE MIR 30 255 -7 473 289 109 36 chr13 70951146 70951450 -48793448 - L2 LINE L2 -101 3212 2887 555 278 30 37 chr13 70952068 70952363 -48792535 - L1MC5 LINE L1 -60 7901 7609 319 257 14 14 chr13 70953349 70953489 -48791409 + (TA)n Simple_repeat Simple_repeat 2 141 0 325 299 3 9 chr13 70953508 70953718 -48791180 + (TA)n Simple_repeat Simple_repeat 1 208 0 191 172 0 17 chr13 70953789 70953847 -48791051 + (TA)n Simple_repeat Simple_repeat 1 57 0 212 236 0 0 chr13 70953899 70953954 -48790944 + CT-rich Low_complexity Low_complexity 1 55 0 193 345 135 20 chr13 70954493 70954693 -48790205 + L3 LINE CR1 1246 1468 -109 33 43 0 0 chr13 70954871 70954918 -48789980 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr13 70955404 70955429 -48789469 + AT_rich Low_complexity Low_complexity 1 25 0 2160 90 7 23 chr13 70955725 70956026 -48788872 - AluSq SINE Alu -17 296 1 261 0 0 0 chr13 70956242 70956271 -48788627 + (TG)n Simple_repeat Simple_repeat 2 30 0 198 346 58 10 chr13 70958084 70958188 -48786710 + L2 LINE L2 2523 2631 -683 422 319 92 42 chr13 70958407 70958767 -48786131 + L2 LINE L2 2926 3303 -10 2499 127 45 32 chr13 70959035 70959499 -48785399 + L1PA16 LINE L1 5694 6163 -3 1297 195 0 55 chr13 70959993 70960250 -48784648 + AluJo SINE Alu 3 245 -67 1253 235 81 44 chr13 70960339 70960769 -48784129 + MLT1C LTR MaLR 8 453 -14 24 0 0 0 chr13 70960902 70960926 -48783972 + AT_rich Low_complexity Low_complexity 1 24 0 414 246 18 0 chr13 70961371 70961481 -48783417 - MER70B LTR ERVL -11 567 456 414 266 95 99 chr13 70962767 70963152 -48781746 - MER57A LTR ERV1 0 403 49 40 49 0 0 chr13 70963304 70963365 -48781533 + AT_rich Low_complexity Low_complexity 1 61 0 432 288 8 8 chr13 70963485 70963617 -48781281 + MLT1J LTR MaLR 378 509 -2 1804 174 132 8 chr13 70964648 70965028 -48779870 - MSTA LTR MaLR 0 428 2 263 237 197 0 chr13 70965367 70965443 -48779455 - L2 LINE L2 0 3313 3223 23 0 0 0 chr13 70965709 70965732 -48779166 + AT_rich Low_complexity Low_complexity 1 23 0 354 138 0 0 chr13 70966222 70966280 -48778618 + (CTG)n Simple_repeat Simple_repeat 3 60 0 25 83 0 0 chr13 70966280 70966340 -48778558 + AT_rich Low_complexity Low_complexity 1 60 0 306 330 32 0 chr13 70967975 70968069 -48776829 - MER91B DNA MER1_type 0 190 94 483 307 7 40 chr13 70968069 70968219 -48776679 - MER91B DNA MER1_type -43 147 3 219 232 0 0 chr13 70968430 70968486 -48776412 + (TA)n Simple_repeat Simple_repeat 1 56 0 231 114 0 0 chr13 70968701 70968736 -48776162 + (TA)n Simple_repeat Simple_repeat 2 36 0 1932 138 0 7 chr13 70968737 70969033 -48775865 - AluSp SINE Alu -13 300 7 2127 83 28 0 chr13 70969647 70969936 -48774962 + AluSp SINE Alu 1 297 -16 31 0 0 0 chr13 70970963 70970994 -48773904 + AT_rich Low_complexity Low_complexity 1 31 0 997 237 28 13 chr13 70971404 70971721 -48773177 - L1M4 LINE L1 -845 5301 4980 6744 34 0 0 chr13 70971831 70972649 -48772249 - L1PA3 LINE L1 -1119 5027 4210 7473 36 1 0 chr13 70972649 70973777 -48771121 + L1PA3 LINE L1 5024 6152 -3 4640 136 30 75 chr13 70974535 70975447 -48769451 - MER4D LTR ERV1 -1 871 1 2410 161 32 32 chr13 70977809 70978311 -48766587 - L1MA10 LINE L1 0 6334 5833 330 360 48 42 chr13 70978760 70979131 -48765767 + L2 LINE L2 2701 3078 -194 232 86 52 35 chr13 70979209 70979267 -48765631 - L1MCa LINE L1 -4362 2064 2006 * 294 300 0 0 chr13 70979240 70979330 -48765568 + L1MC4 LINE L1 6614 6703 -1339 251 284 10 78 chr13 70979415 70979517 -48765381 + L2 LINE L2 3176 3270 -2 441 0 0 0 chr13 70979864 70979913 -48764985 + (TG)n Simple_repeat Simple_repeat 2 50 0 1996 136 17 7 chr13 70980152 70980454 -48764444 + AluSg SINE Alu 3 307 -3 1683 185 0 22 chr13 70980531 70980844 -48764054 - AluJb SINE Alu -6 306 1 762 242 75 122 chr13 70981391 70982016 -48762882 + LTR4 LTR ERV1 1 596 0 234 0 0 0 chr13 70983106 70983132 -48761766 + (TG)n Simple_repeat Simple_repeat 2 27 0 2243 82 4 0 chr13 70984986 70985267 -48759631 + AluSg SINE Alu 6 287 -23 1458 234 37 0 chr13 70985416 70985741 -48759157 - MER58B DNA MER1_type -4 337 1 189 0 0 0 chr13 70986023 70986044 -48758854 + (TC)n Simple_repeat Simple_repeat 2 22 0 363 340 121 16 chr13 70986076 70986391 -48758507 - L1M4 LINE L1 -1861 4285 3938 2066 255 69 19 chr13 70986398 70987050 -48757848 - L1ME1 LINE L1 -22 6144 5470 21 36 0 0 chr13 70987065 70987093 -48757805 + AT_rich Low_complexity Low_complexity 1 28 0 581 194 9 0 chr13 70987193 70987301 -48757597 - MLT1A1 LTR MaLR -43 322 214 354 74 0 0 chr13 70987506 70987560 -48757338 + (TA)n Simple_repeat Simple_repeat 2 55 0 641 291 123 56 chr13 70988116 70988473 -48756425 + L2 LINE L2 2928 3308 -5 842 239 32 5 chr13 70988484 70988702 -48756196 + L1MC2 LINE L1 6096 6319 -25 309 293 10 20 chr13 70988714 70988813 -48756085 + GA-rich Low_complexity Low_complexity 3 100 0 289 293 87 13 chr13 70989082 70989232 -48755666 - LTR33 LTR ERVL -271 250 90 201 171 0 0 chr13 70989806 70989841 -48755057 + (TAA)n Simple_repeat Simple_repeat 2 36 0 508 326 59 5 chr13 70989849 70990070 -48754828 - MIR SINE MIR -21 241 9 23 33 0 0 chr13 70990457 70990487 -48754411 + AT_rich Low_complexity Low_complexity 1 30 0 381 22 0 0 chr13 70990757 70990803 -48754095 + (TTA)n Simple_repeat Simple_repeat 3 48 0 211 303 30 0 chr13 70990994 70991060 -48753838 + CT-rich Low_complexity Low_complexity 5 72 0 453 350 66 60 chr13 70992013 70992542 -48752356 + HAL1b LINE L1 68 599 -749 7230 36 11 3 chr13 70992878 70994384 -48750514 + L1PA4 LINE L1 4646 6155 0 2106 85 33 16 chr13 70994428 70994733 -48750165 - AluY SINE Alu -1 310 1 2799 138 16 44 chr13 70994937 70995488 -48749410 - L1MA4A LINE L1 -11 6292 5757 2002 116 7 0 chr13 70996006 70996300 -48748598 - AluSg SINE Alu -14 296 1 639 292 24 10 chr13 70996471 70996680 -48748218 + LTR16A LTR ERVL 144 355 -95 21 71 0 0 chr13 70997380 70997422 -48747476 + AT_rich Low_complexity Low_complexity 1 42 0 2626 168 73 52 chr13 70997432 70997730 -48747168 - MER7C DNA MER2_type -2426 602 312 1708 144 161 0 chr13 70997730 70998077 -48746821 - MER57A LTR ERV1 0 403 1 2626 168 73 52 chr13 70998077 70998368 -48746530 - MER7C DNA MER2_type -2716 312 1 24 0 0 0 chr13 70998368 70998392 -48746506 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 70998558 70998582 -48746316 + AT_rich Low_complexity Low_complexity 1 24 0 220 197 14 14 chr13 70998941 70999012 -48745886 + (TATG)n Simple_repeat Simple_repeat 2 72 0 210 351 0 44 chr13 70999472 70999586 -48745312 - L2 LINE L2 -4 3268 3160 964 301 209 14 chr13 71000026 71000681 -48744217 + LTR50 LTR ERVL 1 783 -12 197 353 121 0 chr13 71001259 71001375 -48743523 - L2 LINE L2 -5 3267 3138 2301 50 0 4 chr13 71001378 71001682 -48743216 + AluY SINE Alu 3 305 0 2060 156 8 27 chr13 71003105 71003476 -48741422 + THE1B LTR MaLR 1 364 0 703 330 68 56 chr13 71003582 71003821 -48741077 + L2 LINE L2 2532 2767 -546 2152 92 7 3 chr13 71003821 71004139 -48740759 + AluSp SINE Alu 1 319 0 703 330 68 56 chr13 71004139 71004663 -48740235 + L2 LINE L2 2767 3312 -1 29 47 0 0 chr13 71005019 71005062 -48739836 + AT_rich Low_complexity Low_complexity 1 43 0 1136 223 45 85 chr13 71006172 71006617 -48738281 + LTR37B LTR ERV1 1 427 -41 1275 192 34 87 chr13 71006773 71007154 -48737744 + MLT1A1 LTR MaLR 1 361 -4 194 0 39 0 chr13 71007196 71007222 -48737676 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 182 402 80 18 chr13 71007225 71007337 -48737561 + L2 LINE L2 1052 1170 -2144 213 318 16 0 chr13 71007452 71007515 -48737383 + L2 LINE L2 1381 1444 -1870 2372 209 35 17 chr13 71009492 71010067 -48734831 - L1MD3 LINE L1 0 7995 7411 320 247 52 21 chr13 71010067 71010164 -48734734 - MLT1F1 LTR MaLR -433 134 35 297 286 65 39 chr13 71010183 71010337 -48734561 - L1MC3 LINE L1 -1312 6473 6316 400 264 36 84 chr13 71010472 71010639 -48734259 - MIR SINE MIR -57 205 47 29 0 0 0 chr13 71010793 71010822 -48734076 + AT_rich Low_complexity Low_complexity 1 29 0 224 320 97 0 chr13 71010841 71010944 -48733954 + MIR SINE MIR 59 171 -91 1606 63 0 0 chr13 71012230 71012435 -48732463 - L1PA4 LINE L1 -214 5941 5737 1514 47 0 0 chr13 71012437 71012627 -48732271 + L1PA4 LINE L1 5963 6152 -3 1705 194 57 27 chr13 71014001 71014403 -48730495 - MLT2D LTR ERVL 0 414 1 22 35 0 0 chr13 71015235 71015264 -48729634 + AT_rich Low_complexity Low_complexity 1 29 0 301 317 21 14 chr13 71015329 71015471 -48729427 - L2 LINE L2 -221 3051 2909 245 152 30 30 chr13 71015798 71015864 -48729034 - L1MC4 LINE L1 -1339 6703 6638 559 321 34 56 chr13 71016280 71016548 -48728350 - MIR SINE MIR 0 262 1 1654 261 77 2 chr13 71016589 71017110 -48727788 + MER90 LTR ERV1 6 565 -10 182 114 0 29 chr13 71017253 71017288 -48727610 + (GA)n Simple_repeat Simple_repeat 1 34 0 324 0 0 0 chr13 71018464 71018500 -48726398 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr13 71018969 71018990 -48725908 + AT_rich Low_complexity Low_complexity 1 21 0 1233 164 74 0 chr13 71019122 71019391 -48725507 - L1MA7 LINE L1 -8 6283 5995 334 347 64 46 chr13 71019447 71019969 -48724929 - L1MDb LINE L1 -4986 1601 1031 198 0 0 0 chr13 71020514 71020536 -48724362 + (TTA)n Simple_repeat Simple_repeat 3 24 0 13827 106 6 7 chr13 71020536 71023376 -48721522 - L1PA7 LINE L1 -18 6136 3303 6208 102 8 3 chr13 71023376 71024286 -48720612 - L1PA7 LINE L1 -3111 3035 2122 243 291 10 10 chr13 71024295 71024398 -48720500 + L1M4 LINE L1 2938 3040 -3106 639 306 113 25 chr13 71024537 71025190 -48719708 + L1M4 LINE L1 3281 3991 -2155 726 259 99 31 chr13 71025317 71025611 -48719287 + L1ME3A LINE L1 5848 6161 -9 35 54 0 0 chr13 71026580 71026636 -48718262 + AT_rich Low_complexity Low_complexity 1 56 0 1340 73 0 0 chr13 71026700 71026865 -48718033 + AluSc SINE Alu 143 307 -2 31 44 0 0 chr13 71026919 71026964 -48717934 + AT_rich Low_complexity Low_complexity 1 45 0 841 137 0 0 chr13 71026983 71027107 -48717791 - AluJb SINE Alu -188 124 1 42 86 0 0 chr13 71027269 71027374 -48717524 + AT_rich Low_complexity Low_complexity 1 105 0 21 36 0 0 chr13 71028296 71028324 -48716574 + AT_rich Low_complexity Low_complexity 1 28 0 346 289 144 11 chr13 71028396 71028576 -48716322 - MIR SINE MIR -12 250 47 45 83 0 0 chr13 71029439 71029547 -48715351 + AT_rich Low_complexity Low_complexity 1 108 0 182 250 14 0 chr13 71029848 71029920 -48714978 + (TA)n Simple_repeat Simple_repeat 1 73 0 435 324 21 31 chr13 71029932 71030190 -48714708 + L1MC/D LINE L1 5488 5744 -457 1104 262 126 0 chr13 71030512 71030829 -48714069 + LTR18A LTR ERVL 1 357 0 249 33 0 0 chr13 71030913 71030943 -48713955 + (A)n Simple_repeat Simple_repeat 1 30 0 345 347 84 47 chr13 71031122 71031465 -48713433 + HAL1 LINE L1 1095 1450 -1057 337 337 66 28 chr13 71031495 71031783 -48713115 + L1ME LINE L1 5521 5819 -302 21 82 0 0 chr13 71031839 71031888 -48713010 + AT_rich Low_complexity Low_complexity 1 49 0 339 319 73 16 chr13 71032755 71032946 -48711952 + MIR SINE MIR 60 261 -1 418 314 74 23 chr13 71034507 71034682 -48710216 + MIR SINE MIR 20 203 -59 259 273 111 45 chr13 71035535 71035733 -48709165 + L2 LINE L2 1565 1775 -1539 41639 39 1 5 chr13 71035733 71041647 -48703251 + L1PA4 LINE L1 264 6155 0 314 253 114 51 chr13 71043110 71043268 -48701630 - L1M4 LINE L1 -1579 4567 4400 303 272 22 7 chr13 71043288 71043424 -48701474 - L1M4 LINE L1 -1822 4324 4187 1198 270 174 28 chr13 71043447 71044132 -48700766 - LTR50 LTR ERVL -8 787 3 239 274 0 0 chr13 71044134 71044196 -48700702 - L1M4 LINE L1 -1980 4166 4105 323 305 81 29 chr13 71044390 71044738 -48700160 - L1M4 LINE L1 -2887 3259 2894 189 74 0 0 chr13 71045078 71045105 -48699793 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 214 302 0 0 chr13 71046195 71046248 -48698650 - MIR SINE MIR -10 252 200 333 0 0 0 chr13 71046573 71046610 -48698288 + (TG)n Simple_repeat Simple_repeat 1 37 0 270 301 14 0 chr13 71046981 71047054 -48697844 + Charlie5 DNA MER1_type 2 75 -2537 273 308 196 8 chr13 71047079 71047212 -48697686 - L2 LINE L2 -448 2866 2709 308 359 67 38 chr13 71047578 71047949 -48696949 + L2 LINE L2 1867 2248 -1066 23 0 0 0 chr13 71048511 71048534 -48696364 + AT_rich Low_complexity Low_complexity 1 23 0 2140 127 0 0 chr13 71048566 71048873 -48696025 - AluSc SINE Alu -2 307 1 188 149 21 0 chr13 71048882 71048929 -48695969 + (TA)n Simple_repeat Simple_repeat 1 48 0 230 271 0 0 chr13 71049283 71049331 -48695567 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 763 226 54 0 chr13 71050586 71050754 -48694144 + MER58A DNA MER1_type 48 224 0 23 0 0 0 chr13 71050760 71050783 -48694115 + AT_rich Low_complexity Low_complexity 1 23 0 1054 225 134 25 chr13 71051081 71051446 -48693452 - LTR52 LTR ERVL -2 419 15 1688 179 7 3 chr13 71051783 71052085 -48692813 - AluJb SINE Alu -9 303 1 21 82 0 0 chr13 71053033 71053082 -48691816 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr13 71053147 71053172 -48691726 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 71053203 71053231 -48691667 + AT_rich Low_complexity Low_complexity 1 28 0 228 298 128 28 chr13 71054427 71054568 -48690330 - MER117 DNA MER1_type -1 196 42 1999 152 0 3 chr13 71054654 71054963 -48689935 - AluSx SINE Alu -4 308 1 21 0 0 0 chr13 71054970 71054991 -48689907 + AT_rich Low_complexity Low_complexity 1 21 0 381 298 0 0 chr13 71055100 71055204 -48689694 + MIR SINE MIR 99 202 -60 2265 268 127 24 chr13 71055252 71055906 -48688992 + L1MC3 LINE L1 6559 7145 -640 2223 149 66 10 chr13 71055906 71056315 -48688583 + MSTB1 LTR MaLR 1 432 0 2265 268 127 24 chr13 71056315 71056766 -48688132 + L1MC3 LINE L1 7145 7777 -8 757 237 59 33 chr13 71056781 71057051 -48687847 + L1ME1 LINE L1 5880 6156 -10 25 75 0 0 chr13 71057180 71057233 -48687665 + AT_rich Low_complexity Low_complexity 1 53 0 2175 90 4 0 chr13 71057638 71057943 -48686955 - AluSp SINE Alu 0 308 3 2700 186 97 29 chr13 71059251 71059986 -48684912 - LTR1B LTR ERV1 -6 779 2 2080 169 86 2 chr13 71060493 71060924 -48683974 + L1MA9 LINE L1 5681 6147 -165 557 97 52 22 chr13 71060935 71061069 -48683829 + GA-rich Low_complexity Low_complexity 2 139 0 692 167 8 0 chr13 71061075 71061207 -48683691 + L1MA9 LINE L1 6172 6304 -8 1942 101 29 0 chr13 71062074 71062350 -48682548 + AluSq SINE Alu 21 304 -9 688 216 39 95 chr13 71063533 71063589 -48681309 + MER20 DNA MER1_type 1 59 -160 333 0 0 0 chr13 71063589 71063626 -48681272 + (CA)n Simple_repeat Simple_repeat 2 38 0 688 216 39 95 chr13 71063626 71063801 -48681097 + MER20 DNA MER1_type 59 219 0 223 209 23 0 chr13 71063801 71063844 -48681054 - L2 LINE L2 -212 3060 3017 765 217 0 0 chr13 71063859 71064002 -48680896 + Tigger7 DNA MER2_type 1 143 -562 555 158 50 0 chr13 71114002 71114103 -48630795 + MLT1B LTR MaLR 285 390 0 21 36 0 0 chr13 71115494 71115522 -48629376 + AT_rich Low_complexity Low_complexity 1 28 0 525 246 72 61 chr13 71115523 71115816 -48629082 - L1MC5 LINE L1 -62 7899 7604 2071 193 70 24 chr13 71115823 71116376 -48628522 - Charlie1 DNA MER1_type 0 2761 2183 678 160 62 21 chr13 71116376 71116520 -48628378 + THE1C LTR MaLR 1 150 -225 189 171 0 0 chr13 71116839 71116874 -48628024 + (TATG)n Simple_repeat Simple_repeat 1 35 0 1607 201 18 0 chr13 71117523 71117866 -48627032 - L1MA6 LINE L1 0 6300 5952 529 215 0 0 chr13 71117867 71117974 -48626924 + L1MA6 LINE L1 5834 5940 -360 27 0 0 0 chr13 71117974 71118001 -48626897 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr13 71118916 71118946 -48625952 + AT_rich Low_complexity Low_complexity 1 30 0 1356 304 93 12 chr13 71121708 71122277 -48622621 + HERVL40 LTR ERVL 4042 4656 -874 2011 133 10 0 chr13 71122959 71123252 -48621646 + AluSx SINE Alu 1 296 -16 1586 180 60 0 chr13 71123542 71123825 -48621073 - AluSx SINE Alu -12 300 1 25 99 0 0 chr13 71124380 71124461 -48620437 + AT_rich Low_complexity Low_complexity 1 81 0 1333 247 71 21 chr13 71126029 71126450 -48618448 + MLT1C LTR MaLR 20 461 -6 995 80 13 0 chr13 71126453 71126603 -48618295 + (TCTA)n Simple_repeat Simple_repeat 1 152 0 304 247 12 0 chr13 71127634 71127719 -48617179 + (TA)n Simple_repeat Simple_repeat 2 87 0 2899 145 50 89 chr13 71127897 71128561 -48616337 - L1MA7 LINE L1 -6 6285 5648 350 346 134 0 chr13 71128564 71128766 -48616132 - L2 LINE L2 -602 2712 2484 2293 166 61 16 chr13 71129016 71129457 -48615441 - LOR1b LTR ERV1 0 461 1 37 0 0 0 chr13 71129549 71129586 -48615312 + AT_rich Low_complexity Low_complexity 1 37 0 603 257 45 50 chr13 71129772 71130038 -48614860 + L1M4b LINE L1 728 1213 -5646 2242 235 75 95 chr13 71130186 71131299 -48613599 - MER52A LTR ERV1 -3 1752 662 879 269 84 13 chr13 71131582 71131880 -48613018 + L1MC4 LINE L1 7349 7667 -375 2836 9 0 0 chr13 71132085 71132400 -48612498 + AluYb8 SINE Alu 1 315 -3 21 57 0 0 chr13 71133427 71133462 -48611436 + AT_rich Low_complexity Low_complexity 1 35 0 2880 89 3 0 chr13 71133470 71133862 -48611036 - L1P LINE L1 -1792 4354 3962 330 263 8 8 chr13 71134021 71134139 -48610759 - L1MC4 LINE L1 -998 7044 6927 * 2740 171 9 27 chr13 71134132 71134659 -48610239 - L1MA6 LINE L1 -30 6270 5753 1262 259 94 9 chr13 71134662 71135087 -48609811 - L1MC4 LINE L1 -1119 6923 6463 325 325 38 50 chr13 71135395 71135616 -48609282 - MIR SINE MIR -7 255 38 261 208 26 13 chr13 71135670 71135747 -48609151 + MER116 DNA Mariner 2 79 -1 1544 87 9 0 chr13 71137303 71137521 -48607377 + THE1B-int LTR MaLR 1361 1580 0 2004 168 28 14 chr13 71137521 71137878 -48607020 + THE1B LTR MaLR 1 362 -2 4576 200 33 11 chr13 71137886 71139334 -48605564 + L1MB1 LINE L1 4673 6154 -10 582 257 22 6 chr13 71139334 71139517 -48605381 + MER53 DNA DNA 4 189 0 5729 132 163 12 chr13 71139951 71141061 -48603837 + MER52C LTR ERV1 1 1278 0 347 40 20 0 chr13 71141748 71141798 -48603100 + MADE1 DNA Mariner 30 80 0 298 334 61 22 chr13 71142397 71142566 -48602332 + MIR3 SINE MIR 8 182 -62 21 0 0 0 chr13 71142645 71142666 -48602232 + AT_rich Low_complexity Low_complexity 1 21 0 442 251 44 111 chr13 71142671 71142986 -48601912 + L1MC5 LINE L1 7202 7486 -475 2095 170 24 3 chr13 71142986 71143368 -48601530 - MLT1B LTR MaLR 0 390 1 442 251 44 111 chr13 71143368 71143459 -48601439 + L1MC5 LINE L1 7486 7581 -380 611 274 50 6 chr13 71143482 71143661 -48601237 + Charlie1a DNA MER1_type 1 187 -1268 349 269 17 0 chr13 71143677 71143796 -48601102 + L1MC3 LINE L1 7015 7135 -650 280 259 53 61 chr13 71144108 71144239 -48600659 - MER89-int LTR ERV1 -162 6639 6510 2323 49 0 0 chr13 71145329 71145617 -48599281 + L1PA4 LINE L1 5867 6154 -1 575 171 0 0 chr13 71145791 71145896 -48599002 - MSTB LTR MaLR 0 428 324 678 163 35 21 chr13 71145901 71146042 -48598856 - MSTB LTR MaLR -283 143 1 265 313 40 47 chr13 71147021 71147171 -48597727 + MLT1I LTR MaLR 77 225 -184 3438 133 19 50 chr13 71147476 71148091 -48596807 + LTR9 LTR ERV1 17 612 0 228 231 0 0 chr13 71148581 71148633 -48596265 - L1MB7 LINE L1 -21 6163 6112 934 192 8 29 chr13 71148633 71148878 -48596020 + L1 LINE L1 2960 3199 -2947 * 4100 234 35 17 chr13 71148872 71148917 -48595981 + L1PA15-16 LINE L1 1886 1929 -4920 886 61 0 0 chr13 71148917 71149031 -48595867 - L1PA5 LINE L1 -8 6146 6033 4100 234 35 17 chr13 71149031 71150169 -48594729 + L1PA15-16 LINE L1 1929 3087 -3762 27 29 0 0 chr13 71154741 71154775 -48590123 + AT_rich Low_complexity Low_complexity 1 34 0 458 263 72 51 chr13 71155123 71155359 -48589539 + L1MB7 LINE L1 1208 1448 -5411 317 197 30 0 chr13 71155374 71155440 -48589458 + L1MB7 LINE L1 1961 2028 -4931 2888 228 53 9 chr13 71155490 71156245 -48588653 + L1MB7 LINE L1 6199 6986 -9 1601 244 113 62 chr13 71158019 71158575 -48586323 - MER50 LTR ERV1 0 734 135 2270 103 3 0 chr13 71158575 71158887 -48586011 + AluSp SINE Alu 1 313 0 1601 244 113 62 chr13 71158887 71159020 -48585878 - MER50 LTR ERV1 -599 135 10 232 324 88 14 chr13 71159108 71159256 -48585642 - L2 LINE L2 -978 2336 2178 314 274 203 38 chr13 71159308 71159545 -48585353 + L2 LINE L2 1893 2168 -1146 401 302 101 11 chr13 71159545 71159724 -48585174 + L2 LINE L2 2629 2823 -491 1841 259 33 12 chr13 71159724 71160203 -48584695 - MER70B LTR ERVL 0 578 90 420 203 0 25 chr13 71160202 71160281 -48584617 - MER70A LTR ERVL -313 159 83 * 1140 293 28 33 chr13 71161071 71161470 -48583428 + LTR40a LTR ERVL 1 397 -122 216 182 0 0 chr13 71161625 71161669 -48583229 + (CATA)n Simple_repeat Simple_repeat 2 45 0 414 266 92 37 chr13 71162740 71162958 -48581940 + L1ME LINE L1 548 777 -5753 573 228 135 0 chr13 71163226 71163419 -48581479 + L1MC2 LINE L1 6117 6335 -9 4643 72 8 0 chr13 71163562 71164172 -48580726 - L1PA7 LINE L1 -141 6013 5399 2226 87 26 0 chr13 71164172 71164483 -48580415 + L1P LINE L1 3541 3859 -2287 533 303 55 42 chr13 71164593 71164903 -48579995 - MER110 LTR ERV1 -8 483 170 2496 60 0 0 chr13 71165472 71165770 -48579128 + AluY SINE Alu 1 298 -13 769 162 50 126 chr13 71166511 71166789 -48578109 - L1MC3 LINE L1 0 7785 7529 17555 152 16 9 chr13 71166914 71170076 -48574822 - L1P4 LINE L1 -686 5482 2304 300 313 161 21 chr13 71170402 71170594 -48574304 + MIR SINE MIR 44 262 0 1958 289 59 21 chr13 71171289 71172089 -48572809 - HERVL40 LTR ERVL -989 4541 3712 434 202 43 26 chr13 71174228 71174351 -48570547 + MSTC LTR MaLR 7 109 -265 876 144 103 29 chr13 71174580 71174754 -48570144 + MER1B DNA MER1_type 153 339 0 576 266 54 0 chr13 71174993 71175177 -48569721 + LTR33 LTR ERVL 328 521 0 24 0 0 0 chr13 71175334 71175358 -48569540 + AT_rich Low_complexity Low_complexity 1 24 0 405 344 88 5 chr13 71175469 71175684 -48569214 - LTR16A LTR ERVL 0 450 218 317 315 94 34 chr13 71177160 71177395 -48567503 + L1ME LINE L1 1823 2071 -4469 599 216 14 0 chr13 71177507 71177646 -48567252 - L1M4 LINE L1 -865 5281 5141 2696 243 64 66 chr13 71177655 71177971 -48566927 + L1M4 LINE L1 3964 4279 -1867 1203 67 43 0 chr13 71177971 71178135 -48566763 + L1PA4 LINE L1 5985 6155 0 2696 243 64 66 chr13 71178135 71178221 -48566677 + L1M4 LINE L1 4279 4364 -1782 3933 144 5 2 chr13 71178221 71178852 -48566046 + MER41B LTR ERV1 3 635 0 2696 243 64 66 chr13 71178852 71179834 -48565064 + L1M4 LINE L1 4364 5346 -800 25 65 0 0 chr13 71179837 71179883 -48565015 + AT_rich Low_complexity Low_complexity 1 46 0 297 0 0 0 chr13 71179911 71179944 -48564954 + (TA)n Simple_repeat Simple_repeat 1 33 0 412 163 71 0 chr13 71181990 71182088 -48562810 + L1MA9 LINE L1 6208 6312 0 320 293 224 17 chr13 71182386 71182560 -48562338 - MIR SINE MIR -16 246 37 228 220 22 33 chr13 71182743 71182834 -48562064 - L1MC4 LINE L1 -1339 6703 6614 233 223 40 34 chr13 71182946 71183121 -48561777 + (TATAA)n Simple_repeat Simple_repeat 3 178 0 180 0 0 0 chr13 71185991 71186011 -48558887 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr13 71186459 71186488 -48558410 + AT_rich Low_complexity Low_complexity 1 29 0 319 250 34 11 chr13 71186861 71186949 -48557949 + MLT1H LTR MaLR 460 549 0 24 0 0 0 chr13 71187210 71187234 -48557664 + AT_rich Low_complexity Low_complexity 1 24 0 261 265 135 50 chr13 71187593 71187971 -48556927 - L1M4c LINE L1 -4988 1396 987 48 60 0 0 chr13 71189737 71189820 -48555078 + AT_rich Low_complexity Low_complexity 1 83 0 21 36 0 0 chr13 71190176 71190204 -48554694 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chr13 71190515 71190560 -48554338 + AT_rich Low_complexity Low_complexity 1 45 0 1142 203 15 11 chr13 71190701 71190962 -48553936 - L1 LINE L1 -841 5305 5044 972 237 18 0 chr13 71190965 71191193 -48553705 + L1P LINE L1 4852 5083 -1063 * 2096 266 60 7 chr13 71191191 71192080 -48552818 - L1 LINE L1 -3266 2880 1951 387 0 0 0 chr13 71192180 71192223 -48552675 + (CA)n Simple_repeat Simple_repeat 1 43 0 249 325 24 0 chr13 71192275 71192398 -48552500 + L1ME3A LINE L1 3885 4010 -2136 2189 134 99 14 chr13 71192807 71193231 -48551667 + L1MA4 LINE L1 5834 6293 -7 647 292 85 39 chr13 71193288 71194093 -48550805 + L1ME3A LINE L1 5294 6159 -11 1431 270 61 81 chr13 71194770 71195706 -48549192 + L1ME LINE L1 57 973 -5097 423 0 0 0 chr13 71195743 71195790 -48549108 + (CA)n Simple_repeat Simple_repeat 2 48 0 366 238 171 49 chr13 71195853 71195918 -48548980 + L1ME LINE L1 1118 1174 -4906 5763 108 39 4 chr13 71195918 71197379 -48547519 - L1PA13 LINE L1 -1 6162 4660 366 238 171 49 chr13 71197379 71197699 -48547199 + L1ME LINE L1 1174 1550 -4530 1781 150 11 0 chr13 71198246 71198526 -48546372 + AluSq SINE Alu 7 289 -24 731 217 18 18 chr13 71199033 71199199 -48545699 + FRAM SINE Alu 1 166 0 36 0 0 0 chr13 71199199 71199235 -48545663 + AT_rich Low_complexity Low_complexity 1 36 0 351 0 0 0 chr13 71201309 71201348 -48543550 + (CA)n Simple_repeat Simple_repeat 1 39 0 604 213 35 100 chr13 71201352 71201582 -48543316 - MER20 DNA MER1_type -4 215 1 249 351 7 13 chr13 71201596 71201750 -48543148 + (CATA)n Simple_repeat Simple_repeat 1 153 0 * 352 315 7 0 chr13 71201674 71201817 -48543081 + (CA)n Simple_repeat Simple_repeat 2 145 0 1219 187 64 12 chr13 71202508 71202675 -48542223 - AluJo SINE Alu -16 296 110 252 0 0 0 chr13 71202675 71202703 -48542195 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1219 187 64 12 chr13 71202703 71202786 -48542112 - AluJo SINE Alu -202 110 33 507 202 0 1 chr13 71202792 71202899 -48541999 - L1P5 LINE L1 -365 5786 5681 1469 207 47 3 chr13 71203099 71203398 -48541500 + AluJb SINE Alu 1 312 0 1653 225 10 5 chr13 71203433 71203824 -48541074 - L1MA6 LINE L1 -234 6066 5674 1618 155 24 14 chr13 71204170 71204467 -48540431 - L1MA6 LINE L1 -665 5635 5336 * 3452 204 22 7 chr13 71204461 71205227 -48539671 + L1MA6 LINE L1 4553 5330 -816 571 308 25 50 chr13 71206632 71206872 -48538026 + MIR SINE MIR 4 237 -25 1417 288 103 6 chr13 71208446 71208933 -48535965 + MLT1E LTR MaLR 60 593 0 396 342 68 45 chr13 71208947 71209257 -48535641 + L2 LINE L2 808 1124 -2190 432 158 0 0 chr13 71209257 71209333 -48535565 + L1MA9 LINE L1 6232 6307 -5 441 305 53 13 chr13 71209413 71209564 -48535334 + L2 LINE L2 2384 2540 -774 225 132 0 0 chr13 71210156 71210194 -48534704 + (CA)n Simple_repeat Simple_repeat 2 39 0 343 251 123 20 chr13 71210231 71210434 -48534464 - L1ME LINE L1 -5184 886 663 1739 330 75 27 chr13 71210470 71211252 -48533646 + HERVL40 LTR ERVL 1641 2460 -3070 3852 132 34 3 chr13 71211256 71211883 -48533015 + L1PA16 LINE L1 5521 6166 0 21 36 0 0 chr13 71211898 71211926 -48532972 + AT_rich Low_complexity Low_complexity 1 28 0 2820 284 33 40 chr13 71212015 71212368 -48532530 + HERVL40 LTR ERVL 2481 2835 -2695 3373 164 38 14 chr13 71212368 71212529 -48532369 + L1MA4 LINE L1 5621 5777 -523 342 0 0 0 chr13 71212529 71212567 -48532331 + (TG)n Simple_repeat Simple_repeat 2 39 0 3373 164 38 14 chr13 71212567 71213062 -48531836 + L1MA4 LINE L1 5777 6293 -7 2820 284 33 40 chr13 71213062 71213710 -48531188 + HERVL40 LTR ERVL 2835 3475 -2055 1167 285 111 19 chr13 71213751 71214221 -48530677 - MLT1E2 LTR MaLR 0 626 114 769 306 4 4 chr13 71214313 71214548 -48530350 + HERVL40 LTR ERVL 3728 3962 -1568 836 223 24 53 chr13 71214557 71214804 -48530094 + L1MB3 LINE L1 5944 6183 0 365 261 0 33 chr13 71216903 71216995 -48527903 + MLT1D LTR MaLR 1 89 -416 21 0 0 0 chr13 71217023 71217044 -48527854 + AT_rich Low_complexity Low_complexity 1 21 0 727 230 24 0 chr13 71217100 71217265 -48527633 - Charlie1 DNA MER1_type -241 2520 2352 434 365 35 20 chr13 71217294 71217700 -48527198 - LTR16B LTR ERVL -19 445 34 756 223 11 27 chr13 71217766 71217954 -48526944 - Charlie1 DNA MER1_type -428 2333 2149 26 30 0 0 chr13 71218485 71218518 -48526380 + AT_rich Low_complexity Low_complexity 1 33 0 229 270 60 0 chr13 71220455 71220555 -48524343 + L1MC4 LINE L1 6598 6703 -1339 209 119 24 0 chr13 71220614 71220656 -48524242 + (TA)n Simple_repeat Simple_repeat 1 43 0 2274 93 3 3 chr13 71220767 71221068 -48523830 - AluSp SINE Alu -10 303 3 330 297 227 5 chr13 71221483 71221668 -48523230 - MIR SINE MIR -32 230 5 2150 170 44 30 chr13 71221999 71222541 -48522357 - MLT2A2 LTR ERVL 0 554 1 25 0 0 0 chr13 71223735 71223760 -48521138 + AT_rich Low_complexity Low_complexity 1 25 0 873 185 13 7 chr13 71223763 71223914 -48520984 + MLT1A1 LTR MaLR 1 152 -213 435 19 0 0 chr13 71224677 71224729 -48520169 + (TA)n Simple_repeat Simple_repeat 2 53 0 32 26 0 0 chr13 71225967 71226006 -48518892 + AT_rich Low_complexity Low_complexity 1 39 0 2662 102 19 61 chr13 71226641 71226917 -48517981 - MLT2A1 LTR ERVL 0 444 193 2001 133 7 0 chr13 71226917 71227203 -48517695 - AluSx SINE Alu -24 288 1 2662 102 19 61 chr13 71227203 71227387 -48517511 - MLT2A1 LTR ERVL -251 193 3 384 22 0 0 chr13 71229182 71229227 -48515671 + (TA)n Simple_repeat Simple_repeat 2 46 0 824 214 4 15 chr13 71230355 71230592 -48514306 + MLT1C LTR MaLR 190 462 -5 302 250 105 0 chr13 71231654 71231730 -48513168 + MLT1H LTR MaLR 91 174 -375 366 164 33 0 chr13 71231763 71231824 -48513074 - THE1B LTR MaLR 0 375 313 1445 132 72 23 chr13 71232032 71232297 -48512601 - THE1B LTR MaLR -86 278 1 3416 171 11 29 chr13 71232344 71232960 -48511938 - MER52A LTR ERV1 0 1755 1151 2709 213 209 38 chr13 71232967 71233755 -48511143 - MER52A LTR ERV1 -832 923 1 421 250 111 14 chr13 71233888 71234032 -48510866 + MLT1H LTR MaLR 392 549 0 198 0 0 0 chr13 71234062 71234084 -48510814 + (CA)n Simple_repeat Simple_repeat 2 23 0 381 188 47 0 chr13 71236240 71236325 -48508573 + MLT1A2 LTR MaLR 1 89 -276 383 93 0 0 chr13 71236325 71236379 -48508519 - L1PA7 LINE L1 -92 6062 6009 664 58 0 0 chr13 71236379 71236461 -48508437 + L1PA8 LINE L1 6086 6172 0 387 0 0 0 chr13 71236742 71236785 -48508113 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 436 126 105 32 chr13 71236829 71236924 -48507974 - FRAM SINE Alu -31 145 44 220 274 0 0 chr13 71237643 71237694 -48507204 - L2 LINE L2 -1 3312 3262 1698 196 72 15 chr13 71238087 71238546 -48506352 + LTR22B LTR ERVK 1 485 -7 798 200 46 129 chr13 71239365 71239690 -48505208 + MLT1A2 LTR MaLR 75 372 -2 180 111 0 0 chr13 71241331 71241358 -48503540 + (CA)n Simple_repeat Simple_repeat 2 28 0 911 324 83 40 chr13 71243388 71244131 -48500767 + L2 LINE L2 2269 3042 -271 4508 64 2 0 chr13 71244236 71244814 -48500084 - L1PA5 LINE L1 -5 6149 5571 2547 48 13 0 chr13 71244814 71245216 -48499682 + L1PA5 LINE L1 5177 5582 -573 195 262 199 28 chr13 71246456 71246597 -48498301 - MIR SINE MIR -40 222 58 316 239 9 6 chr13 71246875 71246988 -48497910 - MER5A DNA MER1_type 0 189 8 35 41 0 0 chr13 71247328 71247377 -48497521 + AT_rich Low_complexity Low_complexity 1 49 0 28 61 0 0 chr13 71249186 71249235 -48495663 + AT_rich Low_complexity Low_complexity 1 49 0 1547 102 43 8 chr13 71249372 71249627 -48495271 + L1MA3 LINE L1 6042 6305 0 21 89 0 0 chr13 71249721 71249777 -48495121 + AT_rich Low_complexity Low_complexity 1 56 0 640 136 38 82 chr13 71250669 71250853 -48494045 + L1M1 LINE L1 3383 3558 -4007 2347 201 32 21 chr13 71251319 71251851 -48493047 - L1PA16 LINE L1 -1 6165 5628 1452 209 37 0 chr13 71251905 71252201 -48492697 - AluJo SINE Alu -5 307 1 1159 200 118 96 chr13 71252534 71253068 -48491830 + LTR55 LTR ERV 1 546 -2 2604 93 35 13 chr13 71253645 71254041 -48490857 + MLT2A1 LTR ERVL 1 405 -39 251 247 78 0 chr13 71254052 71254129 -48490769 - L1MC4 LINE L1 -1348 6694 6612 358 89 0 18 chr13 71254131 71254187 -48490711 + MLT2A2 LTR ERVL 399 453 0 200 271 43 14 chr13 71254668 71254738 -48490160 + CT-rich Low_complexity Low_complexity 3 74 0 247 243 56 28 chr13 71255067 71255174 -48489724 - HAL1b LINE L1 -419 929 820 50 31 0 0 chr13 71255369 71255433 -48489465 + AT_rich Low_complexity Low_complexity 1 64 0 679 207 0 30 chr13 71256110 71256245 -48488653 + FLAM_A SINE Alu 1 131 -2 1462 240 6 16 chr13 71256544 71256910 -48487988 - MLT1A1 LTR MaLR -2 363 2 286 268 362 0 chr13 71256997 71257124 -48487774 - MER5A DNA MER1_type -1 188 16 1177 259 118 53 chr13 71257689 71258162 -48486736 - L1MEc LINE L1 -3418 2797 2356 1409 180 50 32 chr13 71258162 71258445 -48486453 - AluJb SINE Alu -24 288 1 1177 259 118 53 chr13 71258445 71258929 -48485969 - L1MEc LINE L1 -3859 2356 1808 1098 255 108 36 chr13 71258947 71259837 -48485061 - L1MEc LINE L1 -4620 1776 823 2290 76 3 16 chr13 71260050 71260353 -48484545 - AluY SINE Alu -12 299 1 466 311 120 9 chr13 71260384 71260718 -48484180 - L1MEc LINE L1 -5992 404 34 1865 80 4 0 chr13 71260969 71261220 -48483678 + L1PA5 LINE L1 5903 6154 0 187 292 67 100 chr13 71261331 71261451 -48483447 + MER5A DNA MER1_type 59 174 -15 194 254 15 0 chr13 71261557 71261624 -48483274 + (CATA)n Simple_repeat Simple_repeat 2 69 0 22 0 0 0 chr13 71262130 71262152 -48482746 + AT_rich Low_complexity Low_complexity 1 22 0 1500 182 10 29 chr13 71262293 71262600 -48482298 + AluJb SINE Alu 1 301 -11 261 0 0 0 chr13 71262617 71262646 -48482252 + (A)n Simple_repeat Simple_repeat 1 29 0 464 220 126 44 chr13 71263677 71263836 -48481062 - MLT1E3 LTR MaLR -452 172 1 2003 140 7 0 chr13 71264749 71265042 -48479856 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr13 71269075 71269096 -48475802 + AT_rich Low_complexity Low_complexity 1 21 0 1132 171 0 10 chr13 71269097 71269290 -48475608 - AluJb SINE Alu -22 290 100 27 49 0 0 chr13 71269358 71269399 -48475499 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr13 71269541 71269576 -48475322 + AT_rich Low_complexity Low_complexity 1 35 0 764 166 51 0 chr13 71269581 71269738 -48475160 + MER67C LTR ERV1 540 704 -6 21 0 0 0 chr13 71269809 71269830 -48475068 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr13 71270353 71270388 -48474510 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chr13 71270445 71270476 -48474422 + AT_rich Low_complexity Low_complexity 1 31 0 510 232 25 145 chr13 71270828 71270883 -48474015 - MER110 LTR ERV1 -160 331 271 1845 225 38 70 chr13 71270883 71271515 -48473383 - LTR9 LTR ERV1 0 612 1 510 232 25 145 chr13 71271515 71271618 -48473280 - MER110 LTR ERV1 -220 271 217 1347 194 136 13 chr13 71271618 71271928 -48472970 + MER7A DNA MER2_type 1 346 0 510 232 25 145 chr13 71271928 71272044 -48472854 - MER110 LTR ERV1 -274 217 89 239 368 116 0 chr13 71272491 71272586 -48472312 - MER91A DNA MER1_type -13 183 78 200 304 0 0 chr13 71273024 71273080 -48471818 - L2 LINE L2 -3 3269 3214 2084 130 0 0 chr13 71273128 71273421 -48471477 + AluSx SINE Alu 1 293 -19 1622 156 83 42 chr13 71273999 71274359 -48470539 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr13 71274685 71274713 -48470185 + AT_rich Low_complexity Low_complexity 1 28 0 2039 112 42 3 chr13 71275071 71275358 -48469540 + AluSx SINE Alu 5 302 -10 2114 124 0 0 chr13 71276204 71276503 -48468395 - AluSx SINE Alu -13 299 1 613 228 83 28 chr13 71277025 71277205 -48467693 + L1MDa LINE L1 208 397 -6143 2468 207 100 25 chr13 71277863 71278544 -48466354 - MER44D DNA MER2_type -1 604 1 3364 262 91 29 chr13 71278687 71279608 -48465290 + L1MDa LINE L1 202 1065 -5475 2180 116 0 3 chr13 71279608 71279918 -48464980 + AluSc SINE Alu 1 309 0 3364 262 91 29 chr13 71279918 71280318 -48464580 + L1MDa LINE L1 1065 1439 -5101 1348 150 72 72 chr13 71280318 71280451 -48464447 + AluJb SINE Alu 1 133 -179 1984 123 0 7 chr13 71280451 71280771 -48464127 + AluSg SINE Alu 1 310 0 1348 150 72 72 chr13 71280771 71280930 -48463968 + AluJb SINE Alu 132 293 -19 3364 262 91 29 chr13 71280930 71281206 -48463692 + L1MDa LINE L1 1439 1697 -4843 1917 118 14 3 chr13 71281206 71281493 -48463405 + AluSg SINE Alu 21 310 0 3364 262 91 29 chr13 71281493 71283351 -48461547 + L1MDa LINE L1 1697 4032 -2508 1896 159 26 32 chr13 71283351 71283728 -48461170 - THE1C LTR MaLR 0 375 1 3364 262 91 29 chr13 71283728 71283845 -48461053 + L1MDa LINE L1 4032 4140 -2400 507 270 45 0 chr13 71283856 71284056 -48460842 - L1MEc LINE L1 -3515 2700 2492 * 1016 325 43 25 chr13 71284050 71284536 -48460362 - L1MEc LINE L1 -5794 602 108 183 100 0 0 chr13 71284571 71284601 -48460297 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 24 0 0 0 chr13 71284774 71284798 -48460100 + AT_rich Low_complexity Low_complexity 1 24 0 363 275 109 52 chr13 71285575 71285804 -48459094 - MIR SINE MIR -1 261 20 447 19 0 0 chr13 71286307 71286359 -48458539 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 1912 127 4 7 chr13 71286383 71286659 -48458239 - AluSx SINE Alu -33 279 5 2054 143 36 41 chr13 71287099 71287464 -48457434 - THE1B LTR MaLR -1 363 1 239 32 0 0 chr13 71287596 71287627 -48457271 - HY3 scRNA scRNA -5 96 66 481 239 117 6 chr13 71287819 71287975 -48456923 + MER67D LTR ERV1 31 198 -361 987 198 42 23 chr13 71288238 71288455 -48456443 - THE1C LTR MaLR 0 375 155 2310 67 3 0 chr13 71288455 71288752 -48456146 - L1PA8 LINE L1 -440 5732 5435 3101 85 9 2 chr13 71288752 71289173 -48455725 + L1PA8 LINE L1 5744 6171 -1 915 138 62 12 chr13 71289185 71289345 -48455553 - THE1C LTR MaLR -207 168 1 * 2895 163 8 6 chr13 71289345 71289824 -48455074 - MER41B LTR ERV1 -12 623 144 1152 207 26 48 chr13 71289816 71290086 -48454812 - MER41C LTR ERV1 -287 267 4 * 1635 193 20 7 chr13 71290671 71291025 -48453873 - AluJo SINE Alu 0 358 1 26 30 0 0 chr13 71291025 71291058 -48453840 + AT_rich Low_complexity Low_complexity 1 33 0 2768 182 133 123 chr13 71292160 71292714 -48452184 - L1MC3 LINE L1 -32 7753 7070 340 227 6 37 chr13 71292714 71292829 -48452069 - MLT1F1 LTR MaLR -381 168 13 2768 182 133 123 chr13 71292829 71293199 -48451699 - L1MC3 LINE L1 -715 7070 6705 496 277 80 144 chr13 71293973 71294522 -48450376 - L2 LINE L2 -429 2885 2372 341 361 53 70 chr13 71294525 71294769 -48450129 - L2 LINE L2 -28 3244 3005 432 266 52 47 chr13 71296390 71296582 -48448316 - L1M4 LINE L1 -1924 4222 4030 537 249 118 13 chr13 71296727 71296964 -48447934 + L1M4 LINE L1 3247 3508 -2638 4245 216 30 10 chr13 71296984 71298037 -48446861 + L1MA9 LINE L1 5204 6279 -33 1283 265 28 42 chr13 71298036 71298493 -48446405 + L1M4 LINE L1 3688 4138 -2008 * 2206 114 7 0 chr13 71298582 71298880 -48446018 + AluSc SINE Alu 1 300 -9 1733 159 13 32 chr13 71298903 71299218 -48445680 + AluJb SINE Alu 3 311 -1 324 190 34 80 chr13 71299227 71299364 -48445534 - L1M2 LINE L1 -790 5452 5328 728 109 0 70 chr13 71299364 71299492 -48445406 - L1PA7 LINE L1 0 6154 6036 420 262 129 10 chr13 71299574 71299776 -48445122 + L1MD2 LINE L1 5672 5897 -462 923 160 80 0 chr13 71299789 71299977 -48444921 + L1MD3 LINE L1 7779 7981 -14 451 348 43 10 chr13 71300896 71301103 -48443795 - MIR SINE MIR -2 260 47 39 74 0 0 chr13 71301225 71301306 -48443592 + AT_rich Low_complexity Low_complexity 1 81 0 1514 221 47 54 chr13 71301865 71302331 -48442567 - MER31B LTR ERV1 -3 463 1 2038 130 3 22 chr13 71302453 71302768 -48442130 - AluSx SINE Alu -1 311 3 410 248 181 0 chr13 71303732 71303837 -48441061 + FLAM_C SINE Alu 2 125 -8 22 56 0 0 chr13 71304312 71304348 -48440550 + AT_rich Low_complexity Low_complexity 1 36 0 25 83 0 0 chr13 71304530 71304590 -48440308 + AT_rich Low_complexity Low_complexity 1 60 0 3135 113 11 2 chr13 71304640 71305083 -48439815 - MLT2A2 LTR ERVL -6 447 1 281 365 9 9 chr13 71305233 71305348 -48439550 + L2 LINE L2 3183 3297 -16 2698 7 0 0 chr13 71305656 71305951 -48438947 - AluYa5 SINE Alu -16 295 1 208 0 62 0 chr13 71306305 71306337 -48438561 + (TG)n Simple_repeat Simple_repeat 1 34 0 254 279 88 27 chr13 71306765 71306912 -48437986 + L1ME4a LINE L1 5742 5897 -224 268 259 91 14 chr13 71306931 71307074 -48437824 + L1ME4a LINE L1 5934 6087 -34 5039 119 109 62 chr13 71307274 71308734 -48436164 - pTR5 LTR ERV1 0 2438 743 434 88 15 0 chr13 71309218 71309286 -48435612 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 330 326 90 26 chr13 71310319 71310706 -48434192 + L1ME4a LINE L1 5497 5908 -213 22 0 0 0 chr13 71310713 71310735 -48434163 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 71310803 71310845 -48434053 + AT_rich Low_complexity Low_complexity 1 42 0 336 253 26 77 chr13 71310959 71311153 -48433745 + L1ME3A LINE L1 4431 4614 -1532 534 284 72 39 chr13 71311204 71311511 -48433387 + L1ME3A LINE L1 4619 4947 -1199 2243 168 48 12 chr13 71311511 71311694 -48433204 + MSTB1 LTR MaLR 1 176 -256 207 0 0 0 chr13 71311694 71311717 -48433181 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2243 168 48 12 chr13 71311717 71311950 -48432948 + MSTB1 LTR MaLR 176 432 0 534 284 72 39 chr13 71311950 71312103 -48432795 + L1ME3A LINE L1 4947 5094 -1052 905 240 84 23 chr13 71312277 71312702 -48432196 + L1ME3A LINE L1 5313 5769 -401 388 208 34 45 chr13 71312760 71312938 -48431960 + (TA)n Simple_repeat Simple_repeat 2 177 0 496 276 199 10 chr13 71312950 71313251 -48431647 + L1ME3A LINE L1 5807 6164 -6 660 183 20 13 chr13 71313601 71313754 -48431144 + L1MA10 LINE L1 6169 6322 -12 423 218 45 45 chr13 71313765 71313875 -48431023 - L2 LINE L2 -14 3299 3190 512 286 49 16 chr13 71313938 71314123 -48430775 + MLT1J LTR MaLR 10 200 -311 246 253 81 0 chr13 71314296 71314383 -48430515 + MLT1J LTR MaLR 418 511 0 21 0 0 0 chr13 71315279 71315300 -48429598 + AT_rich Low_complexity Low_complexity 1 21 0 188 194 0 0 chr13 71315686 71315717 -48429181 + MIR SINE MIR 120 150 -58 1201 201 0 85 chr13 71316048 71316367 -48428531 + AluJb SINE Alu 1 292 -10 382 282 24 124 chr13 71316675 71316966 -48427932 - MER110 LTR ERV1 -181 310 49 286 153 41 41 chr13 71317619 71317717 -48427181 + (TTAA)n Simple_repeat Simple_repeat 4 101 0 469 303 45 54 chr13 71317956 71318270 -48426628 + HAL1b LINE L1 365 675 -673 2135 102 19 22 chr13 71318273 71318587 -48426311 + AluSq SINE Alu 1 313 0 236 141 54 54 chr13 71318724 71318816 -48426082 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 24 85 0 0 chr13 71318953 71319012 -48425886 + AT_rich Low_complexity Low_complexity 1 59 0 218 214 40 40 chr13 71319128 71319254 -48425644 + (CTATA)n Simple_repeat Simple_repeat 4 129 0 7011 166 28 6 chr13 71319259 71320525 -48424373 - HSMAR2 DNA Mariner -2 1300 7 24 32 0 0 chr13 71320953 71320984 -48423914 + AT_rich Low_complexity Low_complexity 1 31 0 281 300 143 14 chr13 71321111 71321251 -48423647 + MLT1J1 LTR MaLR 1 158 -288 23 0 0 0 chr13 71321320 71321343 -48423555 + AT_rich Low_complexity Low_complexity 1 23 0 1009 158 10 19 chr13 71321383 71321592 -48423306 - L1MA7 LINE L1 0 6291 6085 2036 206 6 30 chr13 71321592 71322067 -48422831 + L1MA7 LINE L1 5679 6142 -149 398 243 39 10 chr13 71323419 71323522 -48421376 + MIR SINE MIR 99 204 -58 252 214 0 0 chr13 71324049 71324091 -48420807 + MER8 DNA MER2_type 198 239 0 796 269 60 20 chr13 71324095 71324396 -48420502 + L1MA9 LINE L1 5958 6270 -42 30 69 0 0 chr13 71324408 71324466 -48420432 + AT_rich Low_complexity Low_complexity 1 58 0 1484 172 20 43 chr13 71324733 71325036 -48419862 + AluJo SINE Alu 1 296 -16 337 347 24 24 chr13 71325536 71325660 -48419238 + L2 LINE L2 2898 3021 -292 1647 171 58 32 chr13 71326455 71326835 -48418063 - MLT1B LTR MaLR 0 390 1 1226 211 62 43 chr13 71327461 71327898 -48417000 + LTR37B LTR ERV1 6 450 -18 210 350 100 11 chr13 71328015 71328195 -48416703 + L2 LINE L2 3110 3305 -8 2821 157 35 40 chr13 71329256 71329834 -48415064 - MER6A DNA MER2_type -30 575 1 1995 277 66 34 chr13 71329835 71330003 -48414895 - L1MCc LINE L1 -3191 3750 3589 1883 169 22 30 chr13 71330003 71330370 -48414528 + THE1B LTR MaLR 1 364 0 1995 277 66 34 chr13 71330370 71331817 -48413081 - L1MCc LINE L1 -3352 3589 1788 2185 194 26 2 chr13 71331817 71332235 -48412663 + MSTA LTR MaLR 1 428 0 1995 277 66 34 chr13 71332235 71333240 -48411658 - L1MCc LINE L1 -5153 1788 817 1088 276 97 52 chr13 71333403 71333642 -48411256 - LTR40a LTR ERVL 0 519 292 1681 171 98 59 chr13 71333642 71334051 -48410847 - MSTB LTR MaLR 0 426 2 1088 276 97 52 chr13 71334051 71334213 -48410685 - LTR40a LTR ERVL -227 292 89 2288 90 3 0 chr13 71334213 71334514 -48410384 + AluSp SINE Alu 3 304 -9 1088 276 97 52 chr13 71334514 71334608 -48410290 - LTR40a LTR ERVL -430 89 1 28618 127 9 71 chr13 71335950 71338404 -48406494 + L1PA7 LINE L1 12 2616 -3538 600 88 0 0 chr13 71338404 71338484 -48406414 + U6 snRNA snRNA 3 82 -25 28618 127 9 71 chr13 71338484 71342507 -48402391 + L1PA7 LINE L1 2616 6154 0 208 308 44 55 chr13 71343244 71343335 -48401563 + L2 LINE L2 3191 3280 -33 219 69 0 0 chr13 71344348 71344377 -48400521 + (CA)n Simple_repeat Simple_repeat 2 30 0 221 143 0 20 chr13 71344397 71344446 -48400452 + (TA)n Simple_repeat Simple_repeat 1 48 0 237 178 0 0 chr13 71344470 71344515 -48400383 + (TA)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chr13 71345390 71345425 -48399473 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 71345484 71345513 -48399385 + AT_rich Low_complexity Low_complexity 1 29 0 5208 140 25 0 chr13 71345520 71346434 -48398464 - L1PA15 LINE L1 -3 6162 5232 2002 40 16 0 chr13 71348807 71349056 -48395842 + L1PA4 LINE L1 5903 6155 0 29 28 0 0 chr13 71349542 71349578 -48395320 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr13 71349714 71349742 -48395156 + AT_rich Low_complexity Low_complexity 1 28 0 252 283 101 31 chr13 71350050 71350209 -48394689 - L2 LINE L2 -34 3279 3110 644 361 55 24 chr13 71350304 71350683 -48394215 - L2 LINE L2 -359 2955 2565 31 44 0 0 chr13 71351437 71351482 -48393416 + AT_rich Low_complexity Low_complexity 1 45 0 237 252 75 28 chr13 71351847 71351954 -48392944 + L1M4 LINE L1 3722 3833 -2313 321 277 69 79 chr13 71352084 71352286 -48392612 + L2 LINE L2 3113 3312 -1 25 65 0 0 chr13 71352711 71352757 -48392141 + AT_rich Low_complexity Low_complexity 1 46 0 191 100 0 50 chr13 71353847 71353887 -48391011 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 222 37 0 0 chr13 71355053 71355080 -48389818 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1328 197 7 63 chr13 71355083 71355382 -48389516 - AluJb SINE Alu -30 282 1 22 80 0 0 chr13 71355391 71355441 -48389457 + AT_rich Low_complexity Low_complexity 1 50 0 233 29 29 0 chr13 71355750 71355784 -48389114 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1886 144 0 0 chr13 71355784 71356061 -48388837 - AluSg SINE Alu -33 277 1 1947 151 0 25 chr13 71356204 71356523 -48388375 - AluSx SINE Alu -1 311 1 318 128 0 0 chr13 71356931 71356978 -48387920 - MLT1J1 LTR MaLR -2 444 398 2240 113 0 0 chr13 71357139 71357440 -48387458 + AluSq SINE Alu 1 301 -12 254 250 36 0 chr13 71357467 71357523 -48387375 - MLT1J2 LTR MaLR -280 170 113 322 264 94 89 chr13 71357578 71357983 -48386915 - LTR52 LTR ERVL -3 418 12 1688 93 126 7 chr13 71357983 71358252 -48386646 - AluSg1 SINE Alu -8 301 1 2030 122 3 13 chr13 71358262 71358565 -48386333 - AluSc SINE Alu -9 300 1 389 268 68 21 chr13 71358866 71359056 -48385842 + L1M4 LINE L1 4411 4609 -1537 280 286 48 75 chr13 71359664 71359811 -48385087 + MIR SINE MIR 31 173 -89 1741 97 4 26 chr13 71359977 71360245 -48384653 - L1PA14 LINE L1 -4 6157 5896 361 242 91 0 chr13 71360372 71360471 -48384427 - MIR SINE MIR -30 232 125 213 237 17 0 chr13 71361043 71361102 -48383796 + T-rich Low_complexity Low_complexity 1 60 0 298 276 9 35 chr13 71361385 71361501 -48383397 + A-rich Low_complexity Low_complexity 5 117 0 23 33 0 0 chr13 71362659 71362689 -48382209 + AT_rich Low_complexity Low_complexity 1 30 0 290 33 49 33 chr13 71362714 71362775 -48382123 + (TAAAA)n Simple_repeat Simple_repeat 4 65 0 389 292 18 9 chr13 71362895 71363008 -48381890 + HsTC2 DNA Tc2 25 138 -1760 1231 263 106 24 chr13 71363017 71363592 -48381306 + HsTC2 DNA Tc2 1274 1895 -3 884 181 6 22 chr13 71363767 71363949 -48380949 + L1MA9 LINE L1 6045 6223 -89 1063 178 9 23 chr13 71363952 71364171 -48380727 + AluJb SINE Alu 94 309 -3 281 271 94 12 chr13 71364422 71364507 -48380391 - L2 LINE L2 -8 3264 3173 200 205 0 0 chr13 71364970 71365009 -48379889 + (TATG)n Simple_repeat Simple_repeat 2 40 0 275 278 11 0 chr13 71365050 71365140 -48379758 + L1ME LINE L1 5427 5517 -645 246 62 0 0 chr13 71367731 71367763 -48377135 + (TG)n Simple_repeat Simple_repeat 2 33 0 198 191 0 0 chr13 71367870 71367917 -48376981 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 263 186 48 28 chr13 71367923 71368068 -48376830 + (TA)n Simple_repeat Simple_repeat 2 149 0 1530 179 107 26 chr13 71368490 71368782 -48376116 + THE1C LTR MaLR 1 327 -48 180 0 0 0 chr13 71368782 71368802 -48376096 + (TA)n Simple_repeat Simple_repeat 1 20 0 1530 179 107 26 chr13 71368802 71368856 -48376042 + THE1C LTR MaLR 327 375 0 8664 143 76 12 chr13 71368856 71370341 -48374557 + THE1C-int LTR MaLR 1 1580 0 1616 165 88 20 chr13 71370341 71370692 -48374206 + THE1C LTR MaLR 1 375 0 30 59 0 0 chr13 71371334 71371385 -48373513 + AT_rich Low_complexity Low_complexity 1 51 0 2357 67 0 14 chr13 71373287 71373584 -48371314 - AluY SINE Alu -18 293 1 23 0 0 0 chr13 71373777 71373800 -48371098 + AT_rich Low_complexity Low_complexity 1 23 0 41 21 0 0 chr13 71375083 71375131 -48369767 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr13 71375509 71375537 -48369361 + AT_rich Low_complexity Low_complexity 1 28 0 1249 156 92 34 chr13 71376239 71376534 -48368364 + MER46B DNA MER2_type 50 236 0 7799 55 12 0 chr13 71376812 71378559 -48366339 + L1PA5 LINE L1 4395 6152 -2 649 257 29 24 chr13 71378600 71378810 -48366088 + L1 LINE L1 2197 2407 -3739 836 118 0 0 chr13 71378823 71378942 -48365956 + AluSq/x SINE Alu 1 119 -194 598 307 10 42 chr13 71378942 71379248 -48365650 + L1 LINE L1 2529 2824 -3322 297 75 0 0 chr13 71379291 71379331 -48365567 + (TG)n Simple_repeat Simple_repeat 1 40 0 318 300 114 57 chr13 71479782 71480009 -48264889 - MIR SINE MIR -7 255 16 28 102 0 0 chr13 71480792 71480890 -48264008 + AT_rich Low_complexity Low_complexity 1 98 0 365 306 127 19 chr13 71481287 71481444 -48263454 - MIR SINE MIR -84 178 5 1213 242 22 36 chr13 71481781 71482141 -48262757 + MLT1A1 LTR MaLR 11 365 0 229 53 0 0 chr13 71482183 71482221 -48262677 - Alu SINE Alu 0 302 265 2716 226 14 0 chr13 71482222 71482858 -48262040 + L1 LINE L1 4154 4798 -1348 1027 119 18 11 chr13 71482860 71483078 -48261820 + AluSc SINE Alu 4 255 -54 301 74 0 0 chr13 71483091 71483145 -48261753 + L1M4 LINE L1 4783 4836 -1310 3509 164 13 10 chr13 71483148 71484132 -48260766 + L1P5 LINE L1 4808 5791 -360 301 244 11 33 chr13 71484137 71484227 -48260671 + L1MC4 LINE L1 6614 6701 -1341 527 157 0 0 chr13 71484246 71484329 -48260569 - L1PB1 LINE L1 -284 5867 5785 2144 187 19 3 chr13 71484752 71485264 -48259634 + LTR69 LTR ERVL 8 588 0 213 282 10 39 chr13 71485350 71485453 -48259445 + A-rich Low_complexity Low_complexity 5 104 0 2207 85 0 26 chr13 71486148 71486453 -48258445 + AluY SINE Alu 1 297 -14 1807 225 116 50 chr13 71487552 71488232 -48256666 - MER50 LTR ERV1 0 734 10 28 0 0 0 chr13 71488651 71488679 -48256219 + AT_rich Low_complexity Low_complexity 1 28 0 400 196 0 23 chr13 71489166 71489267 -48255631 - L1PB1 LINE L1 -398 5786 5694 3470 197 101 63 chr13 71489275 71489452 -48255446 - L1MA9 LINE L1 -34 6278 6109 1454 173 28 0 chr13 71489452 71489701 -48255197 - AluSq SINE Alu -57 256 1 3470 197 101 63 chr13 71489701 71491081 -48253817 - L1MA9 LINE L1 -203 6109 4659 3240 206 45 8 chr13 71491070 71491165 -48253733 + L1 LINE L1 3804 3894 -2252 * 3920 40 0 0 chr13 71491165 71491643 -48253255 - L1PA4 LINE L1 0 6155 5678 3240 206 45 8 chr13 71491643 71492348 -48252550 + L1 LINE L1 3894 4634 -1512 270 0 0 0 chr13 71494142 71494172 -48250726 + (CAA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr13 71494334 71494356 -48250542 + AT_rich Low_complexity Low_complexity 1 22 0 207 259 0 0 chr13 71494437 71494491 -48250407 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 1426 154 52 154 chr13 71495284 71495764 -48249134 + MSTB1 LTR MaLR 2 432 0 563 279 0 13 chr13 71498172 71498326 -48246572 + MER97c DNA MER1_type? 65 216 -874 265 250 0 38 chr13 71498465 71498545 -48246353 + MER97b DNA MER1_type? 140 216 -837 25 0 0 0 chr13 71498726 71498751 -48246147 + AT_rich Low_complexity Low_complexity 1 25 0 824 225 9 9 chr13 71498990 71499203 -48245695 - L1MD2 LINE L1 -4 6355 6143 1356 196 101 24 chr13 71499571 71499908 -48244990 - L1MD2 LINE L1 -206 6153 5791 3380 130 2 8 chr13 71500042 71500556 -48244342 + MER9 LTR ERVK 1 511 0 613 338 56 4 chr13 71500566 71500800 -48244098 - MIR SINE MIR 0 262 17 197 243 14 95 chr13 71500894 71500968 -48243930 - L2 LINE L2 -4 3268 3201 230 350 10 10 chr13 71501950 71502047 -48242851 - Charlie8 DNA MER1_type -2148 269 173 23 33 0 0 chr13 71502441 71502471 -48242427 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr13 71502620 71502643 -48242255 + AT_rich Low_complexity Low_complexity 1 23 0 23 97 0 0 chr13 71502885 71502957 -48241941 + AT_rich Low_complexity Low_complexity 1 72 0 230 183 54 21 chr13 71503469 71503562 -48241336 + (TA)n Simple_repeat Simple_repeat 2 97 0 2317 146 6 0 chr13 71504679 71505041 -48239857 + THE1B LTR MaLR 1 364 0 10407 117 9 27 chr13 71505042 71506649 -48238249 + THE1B-int LTR MaLR 2 1580 0 2506 135 0 0 chr13 71506649 71507013 -48237885 + THE1B LTR MaLR 1 364 0 1734 275 90 36 chr13 71507442 71507853 -48237045 - L1M4 LINE L1 -1300 5240 4853 1276 187 75 19 chr13 71507853 71508152 -48236746 - AluJb SINE Alu 0 314 1 1734 275 90 36 chr13 71508152 71508747 -48236151 - L1M4 LINE L1 -1687 4853 4178 976 265 79 37 chr13 71508746 71509661 -48235237 - L1MDa LINE L1 -3644 2896 1947 * 1993 188 40 0 chr13 71509661 71510038 -48234860 - MSTD LTR MaLR 0 396 5 976 265 79 37 chr13 71510038 71510097 -48234801 - L1MDa LINE L1 -4593 1947 1892 212 273 118 27 chr13 71511043 71511153 -48233745 - MIR SINE MIR -85 177 58 1210 229 119 15 chr13 71511251 71511588 -48233310 + L1MD1 LINE L1 1048 1419 -6146 * 1838 255 50 81 chr13 71511582 71512648 -48232250 + L1MD1 LINE L1 4707 5739 -1826 4006 210 30 16 chr13 71512651 71513801 -48231097 + L1MB4 LINE L1 4999 6163 -17 3882 226 52 41 chr13 71513814 71515647 -48229251 + L1MD1 LINE L1 5735 7587 -74 21 36 0 0 chr13 71515681 71515709 -48229189 + AT_rich Low_complexity Low_complexity 1 28 0 1575 169 12 35 chr13 71516663 71516982 -48227916 - AluJb SINE Alu 0 312 1 243 146 0 0 chr13 71517720 71517761 -48227137 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 188 402 35 0 chr13 71518304 71518391 -48226507 + L3 LINE CR1 572 661 -916 465 19 0 0 chr13 71519155 71519209 -48225689 + (CA)n Simple_repeat Simple_repeat 2 55 0 282 274 65 52 chr13 71519549 71519723 -48225175 + L1MC/D LINE L1 2830 2999 -4566 * 370 230 30 7 chr13 71519721 71519856 -48225042 + L1MC/D LINE L1 6047 6184 -1381 271 235 15 15 chr13 71520105 71520173 -48224725 + CT-rich Low_complexity Low_complexity 1 68 0 183 42 0 0 chr13 71520244 71520268 -48224630 + (TG)n Simple_repeat Simple_repeat 2 25 0 922 319 90 25 chr13 71520551 71521071 -48223827 - HERV16 LTR ERVL -3677 1319 766 1025 292 72 31 chr13 71521743 71522157 -48222741 - LTR16A LTR ERVL -4 446 16 233 250 0 0 chr13 71522222 71522274 -48222624 + Charlie8 DNA MER1_type 1315 1366 -1051 516 201 88 80 chr13 71522274 71522576 -48222322 + MLT1A2 LTR MaLR 1 374 0 1050 284 64 23 chr13 71522736 71523207 -48221691 + Charlie8 DNA MER1_type 1522 2011 -406 578 307 44 14 chr13 71523446 71523718 -48221180 + L1MC/D LINE L1 6852 7115 -479 24 77 0 0 chr13 71524270 71524322 -48220576 + AT_rich Low_complexity Low_complexity 1 52 0 1678 118 33 62 chr13 71524830 71525134 -48219764 - AluSx SINE Alu -17 295 1 23 33 0 0 chr13 71526532 71526562 -48218336 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr13 71527122 71527159 -48217739 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr13 71527374 71527409 -48217489 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr13 71527595 71527632 -48217266 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr13 71527774 71527798 -48217100 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr13 71528074 71528105 -48216793 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr13 71529219 71529249 -48215649 + AT_rich Low_complexity Low_complexity 1 30 0 525 331 12 6 chr13 71529389 71529558 -48215340 + MIR3 SINE MIR 33 202 -6 234 150 0 0 chr13 71531240 71531280 -48213618 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 560 200 30 40 chr13 71531786 71531986 -48212912 - Charlie1a DNA MER1_type -7 1448 1251 1694 216 80 43 chr13 71532422 71533069 -48211829 - Charlie1a DNA MER1_type -7 1448 778 877 219 0 0 chr13 71533125 71533280 -48211618 - FRAM SINE Alu -11 155 1 1555 176 8 0 chr13 71533304 71533559 -48211339 - AluSx SINE Alu -50 262 6 534 206 59 0 chr13 71533559 71533661 -48211237 - AluJo/FLAM SINE Alu -196 116 9 1837 252 37 82 chr13 71533661 71534474 -48210424 - Charlie1a DNA MER1_type -678 777 2 39 38 0 0 chr13 71535094 71535147 -48209751 + AT_rich Low_complexity Low_complexity 1 53 0 349 100 29 0 chr13 71535332 71535402 -48209496 + L1PB1 LINE L1 6078 6149 -2 254 158 53 13 chr13 71535486 71535562 -48209336 + (TA)n Simple_repeat Simple_repeat 1 79 0 192 288 100 38 chr13 71535723 71535803 -48209095 + L2 LINE L2 3184 3268 -4 244 221 78 39 chr13 71536379 71536456 -48208442 + L1MC/D LINE L1 5792 5871 -371 755 321 37 4 chr13 71537549 71537792 -48207106 - MIR SINE MIR 0 262 12 5468 138 17 1 chr13 71537890 71538407 -48206491 + L1PA14 LINE L1 4524 5031 -1130 2405 71 3 3 chr13 71538407 71538717 -48206181 + AluY SINE Alu 1 310 -1 5468 138 17 1 chr13 71538717 71539837 -48205061 + L1PA14 LINE L1 5031 6161 0 2119 191 40 16 chr13 71540190 71540640 -48204258 + MER65C LTR ERV1 1 461 0 237 250 19 0 chr13 71540820 71540872 -48204026 - L2 LINE L2 -5 3308 3256 1885 98 0 47 chr13 71541515 71541791 -48203107 + AluSc SINE Alu 35 297 -12 34 0 0 0 chr13 71542403 71542437 -48202461 + AT_rich Low_complexity Low_complexity 1 34 0 427 329 29 74 chr13 71542629 71543076 -48201822 + L2 LINE L2 2869 3295 -18 221 317 12 79 chr13 71543638 71543802 -48201096 - MIR SINE MIR -38 224 72 27 0 0 0 chr13 71545925 71545952 -48198946 + AT_rich Low_complexity Low_complexity 1 27 0 2037 106 3 3 chr13 71546140 71546423 -48198475 + AluSc SINE Alu 3 285 -24 31 26 0 0 chr13 71546423 71546461 -48198437 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr13 71547907 71547941 -48196957 + AT_rich Low_complexity Low_complexity 1 34 0 425 208 19 0 chr13 71547941 71548047 -48196851 - L1MA8 LINE L1 -4 6287 6180 275 328 128 30 chr13 71548257 71548492 -48196406 + MIR SINE MIR 2 259 -3 230 234 0 0 chr13 71549284 71549331 -48195567 + CT-rich Low_complexity Low_complexity 4 50 0 1900 124 11 3 chr13 71550144 71550458 -48194440 + AluSx SINE Alu 1 316 0 29 28 0 0 chr13 71550611 71550647 -48194251 + AT_rich Low_complexity Low_complexity 1 36 0 517 211 70 6 chr13 71553835 71553991 -48190907 + L1MC/D LINE L1 5331 5496 -863 * 4923 142 15 29 chr13 71553977 71554172 -48190726 + L1PA16 LINE L1 5292 5488 -678 2322 75 3 3 chr13 71554172 71554477 -48190421 + AluY SINE Alu 1 305 -6 4923 142 15 29 chr13 71554477 71555156 -48189742 + L1PA16 LINE L1 5488 6154 -12 21 36 0 0 chr13 71555161 71555189 -48189709 + AT_rich Low_complexity Low_complexity 1 28 0 1635 65 0 39 chr13 71555361 71555590 -48189308 + AluY SINE Alu 1 220 -91 302 400 59 9 chr13 71555705 71555925 -48188973 + L2 LINE L2 2336 2566 -748 207 0 0 0 chr13 71556402 71556425 -48188473 + (TC)n Simple_repeat Simple_repeat 2 24 0 25 75 0 0 chr13 71556425 71556478 -48188420 + AT_rich Low_complexity Low_complexity 1 53 0 369 284 30 73 chr13 71558466 71558698 -48186200 + L2 LINE L2 3091 3312 -1 228 314 31 4 chr13 71558797 71558928 -48185970 + MIR SINE MIR 18 152 -62 2212 92 0 3 chr13 71560640 71560932 -48183966 - AluSc SINE Alu -18 291 1 185 94 31 0 chr13 71562729 71562761 -48182137 + (TA)n Simple_repeat Simple_repeat 1 33 0 250 24 0 49 chr13 71562784 71562825 -48182073 + (TA)n Simple_repeat Simple_repeat 2 40 0 1738 48 0 0 chr13 71562825 71563034 -48181864 - AluY SINE Alu -22 289 81 290 296 166 25 chr13 71563968 71564167 -48180731 - MIR SINE MIR -6 256 30 1444 198 127 17 chr13 71564271 71564680 -48180218 - LTR54B LTR ERV1 -43 455 2 23 0 0 0 chr13 71564981 71565004 -48179894 + AT_rich Low_complexity Low_complexity 1 23 0 217 377 29 29 chr13 71565106 71565244 -48179654 - MIR3 SINE MIR -33 175 38 228 330 77 22 chr13 71565747 71565838 -48179060 + L2 LINE L2 3128 3223 -49 1583 209 84 60 chr13 71565905 71566403 -48178495 - MER67D LTR ERV1 -4 510 1 2027 110 33 13 chr13 71566994 71567294 -48177604 - AluSx SINE Alu -6 306 1 2083 122 13 0 chr13 71567807 71568111 -48176787 + AluSx SINE Alu 1 308 -4 435 165 113 9 chr13 71568454 71568494 -48176404 - LTR48 LTR ERV1 -42 745 711 218 31 0 31 chr13 71568494 71568526 -48176372 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 435 165 113 9 chr13 71568526 71568600 -48176298 - LTR48 LTR ERV1 -76 711 619 1506 226 122 23 chr13 71568637 71569071 -48175827 - LTR48 LTR ERV1 -310 477 1 336 362 49 0 chr13 71569071 71569234 -48175664 - MIR SINE MIR -52 210 40 49 84 0 0 chr13 71569251 71569370 -48175528 + AT_rich Low_complexity Low_complexity 1 119 0 29 18 0 55 chr13 71571471 71571526 -48173372 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr13 71571791 71571812 -48173086 + AT_rich Low_complexity Low_complexity 1 21 0 2193 64 0 7 chr13 71572694 71572977 -48171921 - AluY SINE Alu -30 281 1 288 0 0 0 chr13 71573178 71573210 -48171688 + (CA)n Simple_repeat Simple_repeat 2 33 0 252 232 30 0 chr13 71573215 71573314 -48171584 + (TATATG)n Simple_repeat Simple_repeat 5 106 0 216 143 0 0 chr13 71573305 71573347 -48171551 + (CA)n Simple_repeat Simple_repeat 2 43 0 * 418 270 44 19 chr13 71574210 71574369 -48170529 + L1M4b LINE L1 9 171 -6688 803 354 18 30 chr13 71574414 71574750 -48170148 + L1M4b LINE L1 260 591 -6268 240 269 0 0 chr13 71574887 71574954 -48169944 + L1M4b LINE L1 881 947 -5912 1550 262 28 65 chr13 71575495 71576688 -48168210 + L1M4b LINE L1 1260 2420 -4539 2738 271 58 49 chr13 71576837 71577469 -48167429 + L1M4b LINE L1 2476 3101 -3856 529 252 0 0 chr13 71577469 71577629 -48167269 - FLAM_C SINE Alu 0 160 1 2738 271 58 49 chr13 71577629 71578921 -48165977 + L1M4b LINE L1 3101 4378 -2579 565 203 78 10 chr13 71578929 71579121 -48165777 + L1M4b LINE L1 5120 5324 -1633 761 174 0 0 chr13 71579121 71579242 -48165656 + FLAM_C SINE Alu 1 121 -22 243 0 0 0 chr13 71579242 71579269 -48165629 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 301 281 31 21 chr13 71579269 71579365 -48165533 - L1MC4 LINE L1 -1342 6700 6604 851 192 0 50 chr13 71579386 71579568 -48165330 + FRAM SINE Alu 1 168 -8 603 231 21 119 chr13 71579837 71580080 -48164818 - MER20 DNA MER1_type 0 219 1 210 37 0 0 chr13 71580474 71580501 -48164397 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr13 71582428 71582459 -48162439 + AT_rich Low_complexity Low_complexity 1 31 0 1689 60 4 9 chr13 71582459 71582691 -48162207 - L1PA5 LINE L1 -3 6151 5921 228 211 53 20 chr13 71585912 71586064 -48158834 + (TTATA)n Simple_repeat Simple_repeat 5 161 0 186 326 33 43 chr13 71586089 71586181 -48158717 + MIR3 SINE MIR 115 205 -3 2772 207 21 0 chr13 71586442 71587017 -48157881 - L1MB1 LINE L1 -9 6180 5594 1896 219 19 26 chr13 71587001 71587546 -48157352 - L1M3c LINE L1 -4516 2521 1973 * 295 254 0 15 chr13 71587578 71587645 -48157253 - L1M3c LINE L1 -6075 962 897 2132 148 90 20 chr13 71588377 71588777 -48156121 + MSTA LTR MaLR 1 428 0 7528 200 54 10 chr13 71588777 71589046 -48155852 + MSTA-int LTR MaLR 1 257 -1394 2164 101 10 3 chr13 71589046 71589344 -48155554 - AluSc SINE Alu -9 300 1 7528 200 54 10 chr13 71589344 71590656 -48154242 + MSTA-int LTR MaLR 257 1651 0 1873 143 141 8 chr13 71590656 71591033 -48153865 + MSTA LTR MaLR 1 427 -1 1267 226 164 0 chr13 71591337 71591655 -48153243 - MLT1B LTR MaLR -8 382 13 392 319 157 0 chr13 71591696 71591906 -48152992 + MIR SINE MIR 20 262 0 2554 118 3 0 chr13 71592820 71593183 -48151715 + THE1B LTR MaLR 1 364 0 369 0 0 0 chr13 71593400 71593441 -48151457 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 566 156 10 0 chr13 71593449 71593545 -48151353 + L1PA16 LINE L1 6061 6157 -9 315 316 60 86 chr13 71597027 71597261 -48147637 - L1MC/D LINE L1 -2069 5739 5512 298 360 88 0 chr13 71597534 71597681 -48147217 - MIR SINE MIR -56 206 47 50 59 0 0 chr13 71597811 71597896 -48147002 + AT_rich Low_complexity Low_complexity 1 85 0 22 70 0 0 chr13 71599199 71599242 -48145656 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr13 71599751 71599783 -48145115 + AT_rich Low_complexity Low_complexity 1 32 0 572 288 17 51 chr13 71600801 71600978 -48143920 - MIR SINE MIR -90 172 2 470 279 71 41 chr13 71601014 71601211 -48143687 - MIR SINE MIR -11 251 49 211 214 0 0 chr13 71601250 71601292 -48143606 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 23 0 0 0 chr13 71601430 71601453 -48143445 + AT_rich Low_complexity Low_complexity 1 23 0 198 397 0 0 chr13 71601609 71601672 -48143226 + L2 LINE L2 3196 3258 -14 217 244 231 0 chr13 71604084 71604162 -48140736 - MIR SINE MIR -109 153 58 477 240 74 0 chr13 71604244 71604365 -48140533 + FLAM_C SINE Alu 1 130 -3 503 238 16 25 chr13 71604910 71605032 -48139866 - L2 LINE L2 0 3313 3193 288 130 0 0 chr13 71605064 71605110 -48139788 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 208 215 108 86 chr13 71605164 71605257 -48139641 - L2 LINE L2 0 3272 3178 825 200 5 79 chr13 71605874 71606089 -48138809 - MER20 DNA MER1_type 0 219 21 22 35 0 0 chr13 71607263 71607292 -48137606 + AT_rich Low_complexity Low_complexity 1 29 0 8400 137 28 52 chr13 71607773 71608613 -48136285 - L1PA12 LINE L1 -5250 2331 1540 207 0 0 0 chr13 71608613 71608636 -48136262 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8400 137 28 52 chr13 71608636 71609309 -48135589 - L1PA12 LINE L1 -6041 1540 853 5358 105 60 12 chr13 71609308 71610158 -48134740 + L1PA14 LINE L1 5261 6151 -10 * 192 179 0 0 chr13 71610159 71610198 -48134700 + (TA)n Simple_repeat Simple_repeat 1 39 0 192 300 71 0 chr13 71610568 71610638 -48134260 - L3 LINE CR1 -155 1422 1348 339 71 20 91 chr13 71611106 71611205 -48133693 + (TA)n Simple_repeat Simple_repeat 1 92 0 27 62 0 0 chr13 71611526 71611574 -48133324 + AT_rich Low_complexity Low_complexity 1 48 0 1694 96 7 106 chr13 71611657 71611988 -48132910 + AluSx SINE Alu 21 322 0 1733 148 47 0 chr13 71612872 71613150 -48131748 + AluSx SINE Alu 1 291 -21 533 265 17 72 chr13 71613313 71613494 -48131404 - MLT1K LTR MaLR -162 426 256 181 280 20 0 chr13 71613504 71613554 -48131344 - MER5A DNA MER1_type -118 71 21 207 356 43 12 chr13 71613690 71613800 -48131098 - MIR SINE MIR -76 132 40 197 132 26 0 chr13 71614103 71614141 -48130757 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 276 259 61 27 chr13 71615574 71615721 -48129177 + L1ME LINE L1 4903 5054 -1092 415 281 31 51 chr13 71615764 71615960 -48128938 + L2 LINE L2 3067 3258 -55 1256 262 32 37 chr13 71616013 71616414 -48128484 - LTR40c LTR ERVL -66 399 1 249 317 68 31 chr13 71616643 71616804 -48128094 + L1ME LINE L1 5352 5518 -646 23 33 0 0 chr13 71616987 71617017 -48127881 + AT_rich Low_complexity Low_complexity 1 30 0 1507 219 36 20 chr13 71617117 71617473 -48127425 + MLT1A1 LTR MaLR 2 363 -2 26 0 0 0 chr13 71617553 71617579 -48127319 + AT_rich Low_complexity Low_complexity 1 26 0 282 384 23 15 chr13 71617924 71618057 -48126841 + MIR SINE MIR 21 154 -108 361 335 16 21 chr13 71618445 71618633 -48126265 + MLT1L LTR MaLR 429 615 0 233 200 189 0 chr13 71620607 71620697 -48124201 - HAL1b LINE L1 0 1348 1242 3842 227 101 28 chr13 71620770 71622126 -48122772 + Charlie1a DNA MER1_type 1 1455 0 5981 129 5 19 chr13 71622169 71623191 -48121707 - L1P LINE L1 -2518 3628 2621 1028 92 12 0 chr13 71623322 71623486 -48121412 - L1P LINE L1 -738 5428 5263 4797 215 5 27 chr13 71623501 71624690 -48120208 + L1P LINE L1 4073 5235 -911 8050 243 35 15 chr13 71624694 71625884 -48119014 - L1 LINE L1 -1739 4231 3066 2255 100 0 10 chr13 71625884 71626195 -48118703 + AluY SINE Alu 1 308 -3 8050 243 35 15 chr13 71626195 71627922 -48116976 - L1 LINE L1 -2904 3066 1167 2725 287 83 26 chr13 71627918 71629270 -48115628 - L1 LINE L1 -4553 1338 139 * 550 217 0 17 chr13 71629441 71629561 -48115337 - L1 LINE L1 -5772 119 2 266 313 0 20 chr13 71629573 71629672 -48115226 + CT-rich Low_complexity Low_complexity 2 98 0 506 366 57 42 chr13 71633509 71633913 -48110985 + MER115 DNA AcHobo 5 414 -279 310 237 65 21 chr13 71634057 71634150 -48110748 + Zaphod DNA AcHobo 3935 4031 0 180 0 0 0 chr13 71635755 71635775 -48109123 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2379 230 38 8 chr13 71636125 71636737 -48108161 + L1MB7 LINE L1 5525 6154 -30 939 336 46 9 chr13 71636757 71637105 -48107793 + LTR16A LTR ERVL 90 450 0 22 56 0 0 chr13 71637550 71637586 -48107312 + AT_rich Low_complexity Low_complexity 1 36 0 438 20 0 0 chr13 71637699 71637750 -48107148 + (CA)n Simple_repeat Simple_repeat 1 51 0 590 159 14 14 chr13 71637952 71638090 -48106808 + GA-rich Low_complexity Low_complexity 4 141 0 260 302 23 13 chr13 71638768 71638858 -48106040 - MIR SINE MIR -61 147 57 327 305 19 26 chr13 71639665 71639819 -48105079 + LTR16A1 LTR ERVL 23 175 -282 542 63 13 0 chr13 71639897 71639976 -48104922 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 3908 220 27 25 chr13 71640004 71641162 -48103736 - L1MA9 LINE L1 -25 6287 5128 21 57 0 0 chr13 71641188 71641223 -48103675 + AT_rich Low_complexity Low_complexity 1 35 0 280 299 63 23 chr13 71641992 71642166 -48102732 - L1ME LINE L1 -581 5585 5405 1109 265 62 80 chr13 71642320 71643114 -48101784 - L2 LINE L2 0 3313 2491 2689 102 3 0 chr13 71643267 71643630 -48101268 - THE1B LTR MaLR 0 364 1 1414 108 14 0 chr13 71643722 71643934 -48100964 + L1PB2 LINE L1 5935 6149 -2 319 296 160 0 chr13 71644481 71644606 -48100292 + MIR SINE MIR 47 191 -71 2447 61 0 0 chr13 71646955 71647252 -48097646 + AluY SINE Alu 1 297 -14 2001 145 0 0 chr13 71647337 71647627 -48097271 - AluSx SINE Alu -18 294 5 1219 293 71 43 chr13 71648048 71648581 -48096317 - MLT1E LTR MaLR -6 587 40 1845 143 6 34 chr13 71648678 71648999 -48095899 - AluSx SINE Alu 0 312 1 241 221 0 59 chr13 71649100 71649168 -48095730 + L2 LINE L2 3209 3272 0 24 0 0 0 chr13 71650379 71650403 -48094495 + AT_rich Low_complexity Low_complexity 1 24 0 203 267 0 0 chr13 71650440 71650485 -48094413 + T-rich Low_complexity Low_complexity 3 47 0 268 328 94 70 chr13 71650991 71651393 -48093505 - MLT1J LTR MaLR -97 414 3 561 186 97 8 chr13 71651662 71651786 -48093112 + MER3 DNA MER1_type 47 181 -28 202 146 0 62 chr13 71652004 71652052 -48092846 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 3159 141 35 0 chr13 71652174 71652691 -48092207 + L1PA16 LINE L1 5628 6162 -4 715 75 9 28 chr13 71652868 71652974 -48091924 + THE1A LTR MaLR 1 104 -260 972 105 8 0 chr13 71652986 71653119 -48091779 + THE1A LTR MaLR 222 355 0 10992 105 16 1 chr13 71653119 71654676 -48090222 + THE1A-int LTR MaLR 1 1580 0 2346 115 6 11 chr13 71654676 71655033 -48089865 + THE1A LTR MaLR 1 355 0 263 325 64 48 chr13 71655033 71655408 -48089490 - L1ME LINE L1 -423 5698 5318 337 364 69 31 chr13 71655410 71655919 -48088979 - L1ME LINE L1 -840 5306 4779 214 209 16 105 chr13 71656806 71656997 -48087901 + T-rich Low_complexity Low_complexity 2 175 0 247 274 0 0 chr13 71657406 71657479 -48087419 + (TA)n Simple_repeat Simple_repeat 2 74 0 358 312 103 20 chr13 71657666 71657958 -48086940 - L1ME LINE L1 -3630 2516 2201 23 54 0 0 chr13 71658198 71658235 -48086663 + AT_rich Low_complexity Low_complexity 1 37 0 245 323 162 4 chr13 71658334 71658563 -48086335 - L1ME LINE L1 -391 5779 5515 325 272 44 52 chr13 71658578 71658714 -48086184 - L1ME LINE L1 -3336 2810 2676 284 286 44 0 chr13 71658736 71658827 -48086071 + MLT1J LTR MaLR 37 131 -380 336 278 26 43 chr13 71658895 71659010 -48085888 + MLT1J LTR MaLR 376 488 -23 23 68 0 0 chr13 71659019 71659063 -48085835 + AT_rich Low_complexity Low_complexity 1 44 0 727 355 133 21 chr13 71659254 71659787 -48085111 + L3 LINE CR1 984 1576 -1 180 330 70 10 chr13 71660744 71660844 -48084054 - MIR3 SINE MIR -7 201 96 572 323 123 25 chr13 71662018 71662548 -48082350 + L1MC4a LINE L1 5254 5835 -1973 386 310 0 28 chr13 71662706 71662848 -48082050 + MIR SINE MIR 36 173 -89 205 171 14 57 chr13 71662907 71662977 -48081921 + (TTATA)n Simple_repeat Simple_repeat 1 67 0 2385 49 3 13 chr13 71664203 71664510 -48080388 + AluY SINE Alu 1 304 -7 271 237 0 0 chr13 71664524 71664583 -48080315 + MLT1J LTR MaLR 474 532 -17 1149 310 74 24 chr13 71664992 71665489 -48079409 + MLT1G1 LTR MaLR 73 594 -1 286 325 32 0 chr13 71665740 71665866 -48079032 + Charlie8 DNA MER1_type 49 178 -2239 26 0 0 0 chr13 71666602 71666628 -48078270 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr13 71667943 71667971 -48076927 + AT_rich Low_complexity Low_complexity 1 28 0 895 209 33 52 chr13 71669771 71669982 -48074916 - MER58A DNA MER1_type -11 213 7 25 51 0 0 chr13 71670022 71670061 -48074837 + AT_rich Low_complexity Low_complexity 1 39 0 447 304 106 24 chr13 71670353 71670560 -48074338 - MIR SINE MIR 0 262 39 22 70 0 0 chr13 71670633 71670676 -48074222 + AT_rich Low_complexity Low_complexity 1 43 0 301 320 29 6 chr13 71670745 71670917 -48073981 + L1ME4a LINE L1 5730 5905 -216 610 210 160 22 chr13 71670946 71671127 -48073771 + MER63A DNA MER1_type 3 208 -2 934 307 31 34 chr13 71671183 71671571 -48073327 - LTR16B LTR ERVL -4 460 74 1792 163 3 13 chr13 71671795 71672096 -48072802 - AluJb SINE Alu 0 312 15 849 236 14 108 chr13 71672417 71672705 -48072193 + MIR SINE MIR 2 262 0 354 330 9 0 chr13 71672842 71672957 -48071941 + MIR3 SINE MIR 81 196 -12 193 333 38 38 chr13 71673613 71673718 -48071180 - MIR SINE MIR -48 214 110 22 0 0 0 chr13 71673751 71673773 -48071125 + AT_rich Low_complexity Low_complexity 1 22 0 258 193 0 0 chr13 71673935 71673992 -48070906 + (CA)n Simple_repeat Simple_repeat 2 58 0 576 312 11 0 chr13 71674065 71674254 -48070644 + LTR16C LTR ERVL 301 491 0 380 315 51 22 chr13 71674261 71674439 -48070459 - MIR SINE MIR -73 189 7 200 317 82 16 chr13 71675480 71675663 -48069235 - MIR SINE MIR 0 262 68 1645 262 73 65 chr13 71675683 71676270 -48068628 + MER90 LTR ERV1 23 614 0 279 281 0 0 chr13 71676271 71676335 -48068563 - MIR SINE MIR -152 110 47 21 0 0 0 chr13 71676793 71676814 -48068084 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 71676951 71676973 -48067925 + AT_rich Low_complexity Low_complexity 1 22 0 1293 185 126 0 chr13 71676977 71677097 -48067801 + AluJo SINE Alu 1 105 -207 267 31 0 0 chr13 71677097 71677129 -48067769 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1293 185 126 0 chr13 71677129 71677262 -48067636 + AluJo SINE Alu 105 286 -26 372 88 0 0 chr13 71677262 71677319 -48067579 + (TA)n Simple_repeat Simple_repeat 2 58 0 297 0 0 0 chr13 71677318 71677351 -48067547 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 41 93 0 0 chr13 71677450 71677568 -48067330 + AT_rich Low_complexity Low_complexity 1 118 0 1004 237 59 50 chr13 71677713 71678071 -48066827 - L1ME1 LINE L1 -72 6094 5734 2850 274 127 53 chr13 71678355 71678680 -48066218 - L1MEc LINE L1 -4216 2180 1880 1474 201 17 17 chr13 71678680 71678978 -48065920 + AluJb SINE Alu 1 298 -14 2850 274 127 53 chr13 71678978 71680012 -48064886 - L1MEc LINE L1 -4516 1880 625 910 222 38 14 chr13 71680012 71680224 -48064674 + MER20 DNA MER1_type 3 219 0 2850 274 127 53 chr13 71680224 71680853 -48064045 - L1MEc LINE L1 -5771 625 44 22 56 0 0 chr13 71681531 71681567 -48063331 + AT_rich Low_complexity Low_complexity 1 36 0 280 272 122 75 chr13 71681594 71681741 -48063157 - MIR SINE MIR -2 260 107 2054 116 0 3 chr13 71682134 71682470 -48062428 + AluSx SINE Alu 1 335 0 283 161 49 12 chr13 71684409 71684490 -48060408 + (TA)n Simple_repeat Simple_repeat 2 85 0 237 333 22 0 chr13 71684616 71684706 -48060192 - MIR SINE MIR -114 148 57 33 43 0 0 chr13 71684861 71684908 -48059990 + AT_rich Low_complexity Low_complexity 1 47 0 217 355 36 9 chr13 71685069 71685179 -48059719 + L3 LINE CR1 1363 1475 -102 38 68 0 0 chr13 71685503 71685576 -48059322 + AT_rich Low_complexity Low_complexity 1 73 0 180 0 0 0 chr13 71685826 71685846 -48059052 + (CA)n Simple_repeat Simple_repeat 1 20 0 1635 223 87 75 chr13 71686403 71686829 -48058069 - L1MD3 LINE L1 -169 7826 7407 335 267 13 0 chr13 71686829 71686904 -48057994 - MLT1F1 LTR MaLR -456 111 36 1635 223 87 75 chr13 71686904 71687291 -48057607 - L1MD3 LINE L1 -588 7407 6700 261 0 0 0 chr13 71687497 71687526 -48057372 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 470 301 105 29 chr13 71688162 71688401 -48056497 + MIR SINE MIR 1 257 -5 228 359 120 12 chr13 71688548 71688715 -48056183 - MIR3 SINE MIR -15 193 9 1781 155 7 45 chr13 71688931 71689241 -48055657 - AluSx SINE Alu -14 298 1 22 56 0 0 chr13 71689312 71689348 -48055550 + AT_rich Low_complexity Low_complexity 1 36 0 1620 183 44 27 chr13 71689946 71690312 -48054586 + THE1C LTR MaLR 1 372 -3 23 68 0 0 chr13 71690689 71690733 -48054165 + AT_rich Low_complexity Low_complexity 1 44 0 867 310 17 13 chr13 71690741 71690980 -48053918 - MIR SINE MIR -21 241 2 369 294 100 69 chr13 71692920 71693281 -48051617 - HAL1 LINE L1 -810 1697 1326 25 0 0 0 chr13 71693787 71693812 -48051086 + AT_rich Low_complexity Low_complexity 1 25 0 186 143 0 0 chr13 71694188 71694223 -48050675 + (TA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 71694239 71694260 -48050638 + AT_rich Low_complexity Low_complexity 1 21 0 473 229 151 64 chr13 71695312 71695748 -48049150 - L1MC5 LINE L1 -35 7926 7453 2204 107 3 3 chr13 71696693 71697001 -48047897 - AluSc SINE Alu -1 308 1 2399 52 0 13 chr13 71697590 71697899 -48046999 - AluY SINE Alu -6 305 1 595 238 7 14 chr13 71697964 71698107 -48046791 + MLT1A1 LTR MaLR 11 152 -213 413 120 0 27 chr13 71698110 71698185 -48046713 + (GGAGAA)n Simple_repeat Simple_repeat 3 75 0 424 278 26 9 chr13 71698221 71698336 -48046562 + MLT1A1 LTR MaLR 163 279 -86 203 254 61 70 chr13 71699432 71699546 -48045352 - MIR SINE MIR -60 202 90 204 97 0 0 chr13 71699852 71699883 -48045015 + (TC)n Simple_repeat Simple_repeat 1 31 0 1941 174 113 9 chr13 71701168 71701604 -48043294 - LTR45B LTR ERV1 0 525 14 373 274 9 18 chr13 71701603 71701716 -48043182 - MER97c DNA MER1_type? -978 112 1 * 198 0 0 0 chr13 71702220 71702242 -48042656 + (A)n Simple_repeat Simple_repeat 1 22 0 477 342 71 5 chr13 71702295 71702491 -48042407 - MIR SINE MIR -32 230 22 279 0 0 0 chr13 71702767 71702798 -48042100 + (TG)n Simple_repeat Simple_repeat 1 31 0 2134 122 0 3 chr13 71702923 71703217 -48041681 + AluSx SINE Alu 1 293 -19 2856 116 30 0 chr13 71703386 71703850 -48041048 + L1PA10 LINE L1 5710 6186 0 21 0 0 0 chr13 71705155 71705176 -48039722 + AT_rich Low_complexity Low_complexity 1 21 0 235 293 0 38 chr13 71707560 71707666 -48037232 - L1MC4 LINE L1 -1326 6716 6615 3044 121 14 14 chr13 71708349 71708845 -48036053 + L1PA13 LINE L1 5661 6156 -7 1630 164 52 3 chr13 71708847 71709133 -48035765 + AluSx SINE Alu 1 300 -12 321 26 0 0 chr13 71709424 71709462 -48035436 + (CA)n Simple_repeat Simple_repeat 1 38 0 202 345 0 24 chr13 71709602 71709686 -48035212 + MIR SINE MIR 47 128 -80 21 0 0 0 chr13 71710119 71710140 -48034758 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 71710193 71710231 -48034667 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr13 71710574 71710612 -48034286 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 71712710 71712731 -48032167 + AT_rich Low_complexity Low_complexity 1 21 0 204 97 0 0 chr13 71713320 71713351 -48031547 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 298 150 0 25 chr13 71713351 71713431 -48031467 + (TA)n Simple_repeat Simple_repeat 2 79 0 229 225 9 54 chr13 71713436 71713547 -48031351 - L1MC4 LINE L1 -1338 6704 6599 321 283 239 6 chr13 71713642 71713801 -48031097 - MIR SINE MIR -8 254 59 25 0 0 0 chr13 71713971 71713996 -48030902 + AT_rich Low_complexity Low_complexity 1 25 0 1941 150 3 3 chr13 71716230 71716537 -48028361 - AluSx SINE Alu -5 307 1 28 71 0 0 chr13 71717301 71717357 -48027541 + AT_rich Low_complexity Low_complexity 1 56 0 190 325 50 12 chr13 71717475 71717555 -48027343 - L2 LINE L2 -176 3096 3014 23 0 0 0 chr13 71720720 71720743 -48024155 + AT_rich Low_complexity Low_complexity 1 23 0 1221 269 13 38 chr13 71721658 71722030 -48022868 + MLT1A2 LTR MaLR 1 363 -11 462 248 244 28 chr13 71723418 71723714 -48021184 - MLT1G1 LTR MaLR -1 594 209 3633 187 31 51 chr13 71723930 71724818 -48020080 + L1MA9 LINE L1 5405 6275 -37 23 0 0 0 chr13 71725420 71725443 -48019455 + AT_rich Low_complexity Low_complexity 1 23 0 499 290 124 16 chr13 71725736 71726050 -48018848 + HAL1b LINE L1 456 803 -545 1862 212 19 14 chr13 71726109 71726533 -48018365 - MER65C LTR ERV1 -35 426 1 503 43 14 0 chr13 71726796 71726866 -48018032 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 231 324 68 11 chr13 71727316 71727492 -48017406 + L1M4 LINE L1 3768 3953 -2193 1236 277 107 21 chr13 71727776 71728245 -48016653 - LTR40a LTR ERVL -2 517 9 25 0 0 0 chr13 71728590 71728615 -48016283 + AT_rich Low_complexity Low_complexity 1 25 0 38 68 0 0 chr13 71729883 71729956 -48014942 + AT_rich Low_complexity Low_complexity 1 73 0 21 71 0 0 chr13 71730402 71730444 -48014454 + AT_rich Low_complexity Low_complexity 1 42 0 399 21 0 0 chr13 71730775 71730823 -48014075 + (TC)n Simple_repeat Simple_repeat 1 48 0 316 302 31 64 chr13 71731274 71731484 -48013414 - MIR3 SINE MIR -57 205 6 256 65 65 0 chr13 71731628 71731674 -48013224 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 394 310 112 5 chr13 71731719 71731920 -48012978 - MIR SINE MIR -7 255 35 208 286 39 0 chr13 71731960 71732037 -48012861 - MIR SINE MIR -19 243 164 1909 134 7 3 chr13 71732106 71732273 -48012625 - AluSx SINE Alu -19 293 123 191 36 36 0 chr13 71732273 71732301 -48012597 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1909 134 7 3 chr13 71732301 71732425 -48012473 - AluSx SINE Alu -189 123 1 1513 118 0 22 chr13 71732500 71732728 -48012170 + AluSg/x SINE Alu 82 304 -6 1324 249 36 116 chr13 71733221 71733435 -48011463 - L1MEc LINE L1 -1488 4727 4498 327 167 0 0 chr13 71733435 71733489 -48011409 - AluS SINE Alu -20 280 227 1324 249 36 116 chr13 71733489 71733999 -48010899 - L1MEc LINE L1 -1717 4498 4012 1120 268 50 18 chr13 71733993 71734377 -48010521 + L1MD2 LINE L1 5962 6357 -2 * 2347 100 3 0 chr13 71734512 71734823 -48010075 + AluSq SINE Alu 1 312 -1 198 103 0 0 chr13 71735859 71735888 -48009010 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 657 223 0 7 chr13 71736011 71736150 -48008748 + FLAM_C SINE Alu 1 138 -5 851 194 6 0 chr13 71736162 71736358 -48008540 + AluJb SINE Alu 121 317 0 3132 224 111 41 chr13 71736531 71737708 -48007190 + Zaphod DNA AcHobo 2661 3920 -111 634 299 125 16 chr13 71738580 71739219 -48005679 - L1MEc LINE L1 -2769 3446 2738 24 0 0 0 chr13 71739239 71739263 -48005635 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 71739292 71739313 -48005585 + AT_rich Low_complexity Low_complexity 1 21 0 1142 78 0 7 chr13 71739361 71739515 -48005383 + AluY SINE Alu 159 311 0 592 270 83 4 chr13 71739515 71739793 -48005105 - L1MEc LINE L1 -3601 2614 2315 21 0 0 0 chr13 71739834 71739855 -48005043 + AT_rich Low_complexity Low_complexity 1 21 0 743 303 89 23 chr13 71739923 71741124 -48003774 - L1M4c LINE L1 -3441 2941 1527 371 292 38 11 chr13 71741326 71741511 -48003387 - L1MEc LINE L1 -4830 1566 1377 339 244 38 56 chr13 71741705 71741865 -48003033 - L1MEc LINE L1 -5071 1134 978 1010 211 40 116 chr13 71741939 71742361 -48002537 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 71742505 71742527 -48002371 + AT_rich Low_complexity Low_complexity 1 22 0 6107 172 8 15 chr13 71743064 71744110 -48000788 - HSMAR2 DNA Mariner 0 1302 264 2012 150 69 17 chr13 71744110 71744456 -48000442 + THE1B LTR MaLR 1 364 0 5135 105 17 0 chr13 71744456 71745181 -47999717 + THE1B-int LTR MaLR 1 737 -843 3516 140 11 19 chr13 71745181 71745745 -47999153 - LTR6A LTR ERV1 0 564 6 6135 115 1 0 chr13 71745779 71746625 -47998273 + THE1B-int LTR MaLR 734 1580 0 1882 158 79 15 chr13 71746625 71746967 -47997931 + THE1B LTR MaLR 1 364 0 1379 155 8 12 chr13 71746967 71747219 -47997679 - HSMAR2 DNA Mariner -1033 269 19 183 342 64 43 chr13 71747589 71747776 -47997122 - L2 LINE L2 -1305 2009 1819 1772 150 177 16 chr13 71747937 71748304 -47996594 + MSTA LTR MaLR 3 428 0 5881 164 214 14 chr13 71748306 71749120 -47995778 + MSTA-int LTR MaLR 3 653 -927 2068 152 30 28 chr13 71749120 71749483 -47995415 - THE1B LTR MaLR 0 364 1 5881 164 214 14 chr13 71749483 71749983 -47994915 + MSTA-int LTR MaLR 653 1579 -1 1555 171 190 11 chr13 71749984 71750347 -47994551 + MSTA LTR MaLR 1 428 0 27 49 0 0 chr13 71751403 71751444 -47993454 + AT_rich Low_complexity Low_complexity 1 41 0 462 302 215 0 chr13 71752373 71752578 -47992320 + MIR SINE MIR 9 257 -5 249 33 0 0 chr13 71753284 71753314 -47991584 + (A)n Simple_repeat Simple_repeat 1 30 0 397 337 27 16 chr13 71754019 71754203 -47990695 + MIR SINE MIR 56 241 -21 1730 95 81 44 chr13 71754323 71754618 -47990280 + AluY SINE Alu 1 306 -5 714 180 0 0 chr13 71754647 71754769 -47990129 + FRAM SINE Alu 40 161 -15 21 71 0 0 chr13 71755362 71755404 -47989494 + AT_rich Low_complexity Low_complexity 1 42 0 903 257 64 49 chr13 71756586 71756920 -47987978 - MLT1D LTR MaLR 0 593 128 625 200 0 0 chr13 71757020 71757130 -47987768 - AluSq/x SINE Alu -203 110 1 1786 170 0 13 chr13 71757230 71757542 -47987356 - AluJb SINE Alu -2 310 3 2186 116 0 0 chr13 71757866 71758169 -47986729 - AluSq SINE Alu -10 303 1 2141 128 0 10 chr13 71758622 71758935 -47985963 - AluSx SINE Alu -2 310 1 414 81 16 0 chr13 71759103 71759165 -47985733 + Alu SINE Alu 1 63 -255 1164 187 64 49 chr13 71759266 71759533 -47985365 - AluSx SINE Alu -41 271 1 1110 163 25 49 chr13 71759583 71759828 -47985070 - L1PA16 LINE L1 -136 6030 5792 215 137 0 20 chr13 71760220 71760271 -47984627 + (TG)n Simple_repeat Simple_repeat 2 51 0 2049 83 0 11 chr13 71760274 71760551 -47984347 - AluY SINE Alu -37 274 1 2259 69 0 3 chr13 71760561 71760849 -47984049 - AluSx SINE Alu -25 287 1 263 240 10 31 chr13 71760849 71760945 -47983953 - L1MB8 LINE L1 -269 5909 5816 236 29 0 29 chr13 71760950 71760984 -47983914 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 1865 102 58 0 chr13 71760997 71761271 -47983627 - AluSg SINE Alu -20 290 1 423 178 0 93 chr13 71761302 71761409 -47983489 + Charlie1 DNA MER1_type 2218 2314 -447 25 65 0 0 chr13 71761542 71761588 -47983310 + AT_rich Low_complexity Low_complexity 1 46 0 1470 218 30 6 chr13 71761690 71762020 -47982878 - Cheshire DNA MER1_type -761 1659 1322 39 74 0 0 chr13 71762256 71762337 -47982561 + AT_rich Low_complexity Low_complexity 1 81 0 402 321 111 11 chr13 71762460 71762731 -47982167 - L1MB8 LINE L1 -442 5679 5382 4126 208 29 18 chr13 71762843 71763449 -47981449 + L1PA15-16 LINE L1 1954 2576 -4273 2180 125 0 0 chr13 71763449 71763746 -47981152 - AluSx SINE Alu -15 297 1 4126 208 29 18 chr13 71763746 71764199 -47980699 + L1PA15-16 LINE L1 2576 3023 -3826 310 244 17 52 chr13 71764304 71764419 -47980479 - L1PA15-16 LINE L1 -4471 2378 2268 1894 148 3 0 chr13 71764433 71764724 -47980174 - AluSx SINE Alu -20 292 1 270 257 200 40 chr13 71765993 71766293 -47978605 - L2 LINE L2 -340 2974 2627 190 234 45 147 chr13 71766522 71766762 -47978136 + L2 LINE L2 2816 3014 -258 1554 183 43 0 chr13 71766762 71767019 -47977879 + AluJb SINE Alu 1 268 -44 190 234 45 147 chr13 71767019 71767111 -47977787 + L2 LINE L2 3014 3114 -158 227 338 161 17 chr13 71767715 71768014 -47976884 + L2 LINE L2 1181 1522 -1792 854 299 151 46 chr13 71768108 71768935 -47975963 + L2 LINE L2 2051 2995 -318 1878 121 33 4 chr13 71768935 71769230 -47975668 - AluSg SINE Alu 0 303 1 854 299 151 46 chr13 71769230 71769295 -47975603 + L2 LINE L2 2995 3052 -261 1196 204 46 9 chr13 71769930 71770258 -47974640 - L1 LINE L1 -2389 3757 3418 1693 194 0 3 chr13 71770894 71771193 -47973705 + AluJb SINE Alu 1 298 -14 766 252 103 14 chr13 71771655 71771937 -47972961 - L2 LINE L2 -163 3150 2844 270 0 0 0 chr13 71773745 71773775 -47971123 + (CA)n Simple_repeat Simple_repeat 1 30 0 296 321 46 30 chr13 71776997 71777128 -47967770 - L1MD2 LINE L1 -260 6099 5967 * 1070 281 53 20 chr13 71777127 71777636 -47967262 + L1M4 LINE L1 3943 4468 -1678 326 185 0 0 chr13 71777637 71777691 -47967207 + AluS SINE Alu 227 280 -20 734 241 5 0 chr13 71777710 71777905 -47966993 + L1M4 LINE L1 4463 4658 -1488 2460 38 0 44 chr13 71778398 71778717 -47966181 - AluY SINE Alu -6 305 1 441 159 40 25 chr13 71779559 71779839 -47965059 + (TCTA)n Simple_repeat Simple_repeat 1 284 0 508 142 50 12 chr13 71779850 71780257 -47964641 + (TCTA)n Simple_repeat Simple_repeat 1 422 0 235 154 31 0 chr13 71780286 71780351 -47964547 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 442 170 49 8 chr13 71780374 71780836 -47964062 + (TCTA)n Simple_repeat Simple_repeat 1 480 0 219 192 69 46 chr13 71780880 71781010 -47963888 + (TCTA)n Simple_repeat Simple_repeat 1 133 0 202 220 17 0 chr13 71781050 71781077 -47963821 + (TCTA)n Simple_repeat Simple_repeat 2 27 -34 2076 101 7 46 chr13 71781077 71781384 -47963514 - AluSx SINE Alu -15 297 3 202 220 17 0 chr13 71781384 71781415 -47963483 + (TCTA)n Simple_repeat Simple_repeat 27 61 0 189 98 39 20 chr13 71781674 71781725 -47963173 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 840 290 68 31 chr13 71781768 71782120 -47962778 - MLT1J LTR MaLR -45 466 102 1836 171 0 3 chr13 71782885 71783183 -47961715 + AluJb SINE Alu 1 297 -15 241 98 82 16 chr13 71783186 71783247 -47961651 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 607 330 158 32 chr13 71783465 71784023 -47960875 + L2 LINE L2 2080 2707 -607 13640 40 2 7 chr13 71784169 71786617 -47958281 + L1PA5 LINE L1 3702 6152 -2 17067 102 2 23 chr13 71786799 71789362 -47955536 - L1P LINE L1 -3183 2963 454 1183 247 67 11 chr13 71789462 71789835 -47955063 - Charlie1 DNA MER1_type -925 1836 1443 4561 259 92 31 chr13 71789835 71790500 -47954398 - L1MDa LINE L1 -4376 2164 1541 1906 144 4 0 chr13 71790500 71790777 -47954121 - AluSx SINE Alu -34 278 1 4561 259 92 31 chr13 71790777 71790974 -47953924 - L1MDa LINE L1 -4999 1541 1357 2159 125 3 0 chr13 71790974 71791271 -47953627 - AluSx SINE Alu -14 298 1 4561 259 92 31 chr13 71791271 71792445 -47952453 - L1MDa LINE L1 -5183 1357 3 1222 270 54 38 chr13 71792445 71793023 -47951875 - L1MDa LINE L1 -4638 1902 1316 1927 145 14 3 chr13 71793023 71793319 -47951579 - AluSx SINE Alu -11 301 3 248 340 0 0 chr13 71793363 71793460 -47951438 - L1MDa LINE L1 -5903 627 531 1279 224 31 9 chr13 71793540 71793991 -47950907 - L1ME1 LINE L1 -1 6165 5621 1484 101 0 0 chr13 71794842 71795030 -47949868 + AluY SINE Alu 7 194 -117 24 0 0 0 chr13 71795071 71795095 -47949803 + AT_rich Low_complexity Low_complexity 1 24 0 399 21 0 0 chr13 71796509 71796557 -47948341 + (TC)n Simple_repeat Simple_repeat 1 48 0 308 302 31 64 chr13 71797008 71797218 -47947680 - MIR3 SINE MIR -57 205 6 328 56 56 0 chr13 71797362 71797416 -47947482 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 398 304 112 5 chr13 71797461 71797662 -47947236 - MIR SINE MIR -7 255 35 202 286 39 0 chr13 71797702 71797779 -47947119 - MIR SINE MIR -19 243 164 961 68 0 0 chr13 71797848 71797966 -47946932 - AluSp/q SINE Alu -19 294 177 26 50 0 0 chr13 71797973 71798013 -47946885 + AT_rich Low_complexity Low_complexity 1 40 0 192 40 0 0 chr13 71798149 71798174 -47946724 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 847 255 19 9 chr13 71798615 71798827 -47946071 + MLT1E3 LTR MaLR 411 624 0 197 169 17 0 chr13 71799583 71799642 -47945256 + (TA)n Simple_repeat Simple_repeat 2 61 0 27 29 0 0 chr13 71800096 71800130 -47944768 + AT_rich Low_complexity Low_complexity 1 34 0 288 246 16 0 chr13 71800788 71800849 -47944049 - MER77 LTR ERV1 -543 62 1 574 319 141 24 chr13 71800992 71801403 -47943495 + MLT1J LTR MaLR 1 459 -52 470 342 71 26 chr13 71802423 71802774 -47942124 + L2 LINE L2 2031 2397 -917 224 75 0 25 chr13 71802937 71802977 -47941921 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 359 327 96 56 chr13 71803007 71803401 -47941497 + L2 LINE L2 2886 3295 -18 355 349 42 26 chr13 71803899 71804206 -47940692 + HAL1 LINE L1 1393 1704 -803 213 175 0 0 chr13 71804314 71804354 -47940544 + (TA)n Simple_repeat Simple_repeat 2 41 0 2150 268 50 52 chr13 71804562 71806138 -47938760 + L1MEc LINE L1 2009 3541 -2674 215 207 35 0 chr13 71807106 71807164 -47937734 + (TTA)n Simple_repeat Simple_repeat 2 61 0 1470 179 29 22 chr13 71807220 71807532 -47937366 - L1MA8 LINE L1 -19 6272 5959 985 292 30 59 chr13 71807801 71808205 -47936693 - REP3 LTR ERV -170 392 1 314 119 0 45 chr13 71808311 71808378 -47936520 + (CCA)n Simple_repeat Simple_repeat 3 66 0 286 295 0 19 chr13 71808410 71808515 -47936383 - MIR SINE MIR -58 204 102 959 213 22 13 chr13 71808673 71808903 -47935995 - L1MA8 LINE L1 -701 5611 5380 1192 165 41 110 chr13 71808923 71809114 -47935784 + L1MA9 LINE L1 5975 6178 -134 2256 110 0 16 chr13 71809114 71809475 -47935423 + AluSq SINE Alu 1 313 0 1623 209 0 0 chr13 71809480 71809762 -47935136 + AluJb SINE Alu 1 282 -30 321 26 0 0 chr13 71809765 71809803 -47935095 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1192 165 41 110 chr13 71809803 71809964 -47934934 + L1MA9 LINE L1 6184 6312 0 733 140 73 18 chr13 71810637 71810801 -47934097 - MER53 DNA DNA -16 173 1 24 41 0 20 chr13 71810966 71810999 -47933899 + AT_rich Low_complexity Low_complexity 1 34 -14 2145 120 3 0 chr13 71810999 71811291 -47933607 - AluSg SINE Alu -17 293 1 24 41 0 20 chr13 71811291 71811306 -47933592 + AT_rich Low_complexity Low_complexity 34 48 0 21 0 0 0 chr13 71813602 71813623 -47931275 + AT_rich Low_complexity Low_complexity 1 21 0 238 279 48 58 chr13 71814995 71815099 -47929799 + L2 LINE L2 3203 3305 -8 799 179 0 70 chr13 71815908 71816064 -47928834 + AluJo SINE Alu 39 183 -129 187 355 18 9 chr13 71816237 71816347 -47928551 + MIR3 SINE MIR 91 201 -7 254 230 0 40 chr13 71818630 71818704 -47926194 - L1MC4 LINE L1 -1359 6683 6613 223 130 37 0 chr13 71818847 71818901 -47925997 + (TA)n Simple_repeat Simple_repeat 1 56 0 26 0 0 0 chr13 71819354 71819380 -47925518 + AT_rich Low_complexity Low_complexity 1 26 0 1973 152 37 6 chr13 71819540 71819889 -47925009 + THE1B LTR MaLR 3 362 -2 8253 113 16 43 chr13 71819891 71821206 -47923692 + THE1B-int LTR MaLR 1 1280 -300 1947 306 64 47 chr13 71821258 71822174 -47922724 - HERV16 LTR ERVL -4055 941 10 508 342 22 13 chr13 71822260 71822491 -47922407 - LTR16A LTR ERVL -202 248 16 421 278 48 0 chr13 71822506 71822632 -47922266 - LTR16C LTR ERVL -139 352 221 747 143 130 0 chr13 71822638 71822799 -47922099 - L1MA8 LINE L1 -7 6284 6103 21 0 0 0 chr13 71823616 71823637 -47921261 + AT_rich Low_complexity Low_complexity 1 21 0 204 146 0 24 chr13 71824002 71824043 -47920855 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 264 40 60 0 chr13 71825676 71825726 -47919172 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 1541 161 4 15 chr13 71825729 71825990 -47918908 - AluSx SINE Alu -29 283 26 2081 122 0 0 chr13 71826275 71826561 -47918337 + AluSq SINE Alu 1 286 -27 435 100 100 0 chr13 71826561 71826711 -47918187 + (TA)n Simple_repeat Simple_repeat 2 166 0 189 321 24 24 chr13 71827017 71827101 -47917797 - L2 LINE L2 -221 3051 2968 2280 84 0 6 chr13 71827120 71827431 -47917467 + AluY SINE Alu 1 309 -2 180 0 0 0 chr13 71827495 71827515 -47917383 + (GA)n Simple_repeat Simple_repeat 2 21 0 243 297 0 16 chr13 71827632 71827696 -47917202 + L1ME LINE L1 383 445 -5625 216 119 48 0 chr13 71827785 71827827 -47917071 + (CAA)n Simple_repeat Simple_repeat 2 45 0 264 264 48 8 chr13 71827838 71827963 -47916935 + L1ME LINE L1 542 671 -5409 * 1467 215 44 22 chr13 71827958 71828368 -47916530 + L1MA10 LINE L1 5887 6305 -29 934 289 123 28 chr13 71828370 71829054 -47915844 + L1MB2 LINE L1 3370 4118 -2028 231 218 58 35 chr13 71829090 71829177 -47915721 + L1MB2 LINE L1 5183 5271 -875 * 1223 183 45 131 chr13 71829171 71829706 -47915192 - L1M4 LINE L1 -1348 4798 4310 1099 185 92 0 chr13 71829704 71829931 -47914967 + L1MB2 LINE L1 5357 5604 -562 * 219 231 135 0 chr13 71830775 71830827 -47914071 + L2 LINE L2 3248 3306 -7 23 0 0 0 chr13 71830926 71830949 -47913949 + AT_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr13 71832121 71832151 -47912747 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 34 0 0 0 chr13 71832368 71832402 -47912496 + AT_rich Low_complexity Low_complexity 1 34 0 1339 210 148 7 chr13 71832486 71832920 -47911978 - LTR54B LTR ERV1 -2 496 2 1961 224 22 14 chr13 71833063 71833478 -47911420 + L1M4c LINE L1 24 441 -5943 843 238 25 73 chr13 71833470 71833785 -47911113 + L1M4c LINE L1 2490 2789 -3593 * 647 221 75 98 chr13 71833779 71833901 -47910997 + L1M4c LINE L1 3186 3309 -3073 * 1179 224 39 86 chr13 71833901 71834284 -47910614 - MLT1A1 LTR MaLR 0 365 1 647 221 75 98 chr13 71834284 71834496 -47910402 + L1M4c LINE L1 3309 3512 -2870 986 180 6 0 chr13 71834530 71834702 -47910196 + L1MB2 LINE L1 5667 5839 -332 * 1561 260 44 30 chr13 71834696 71835238 -47909660 + L1ME1 LINE L1 5612 6161 -5 1271 167 52 35 chr13 71835457 71835744 -47909154 + L1MA7 LINE L1 5973 6264 -27 209 128 26 0 chr13 71835768 71835807 -47909091 + (TA)n Simple_repeat Simple_repeat 1 40 0 2952 203 86 104 chr13 71835825 71836941 -47907957 + MER52A LTR ERV1 660 1755 0 22 56 0 0 chr13 71836941 71836977 -47907921 + AT_rich Low_complexity Low_complexity 1 36 0 5153 203 68 13 chr13 71837302 71838601 -47906297 - L1PA15-16 LINE L1 -4388 1815 354 681 290 92 120 chr13 71838777 71839494 -47905404 - L1M2 LINE L1 -5792 1057 361 703 103 19 0 chr13 71839578 71839685 -47905213 - MER41B LTR ERV1 -117 518 410 1038 294 32 32 chr13 71840128 71840292 -47904606 - L1M2 LINE L1 -6428 421 258 3572 119 11 2 chr13 71840292 71840839 -47904059 - MER41A LTR ERV1 0 554 3 1038 294 32 32 chr13 71840839 71841086 -47903812 - L1M2 LINE L1 -6590 259 10 235 346 29 39 chr13 71841372 71841476 -47903422 + L2 LINE L2 2961 3063 -209 27 29 0 0 chr13 71841932 71841966 -47902932 + AT_rich Low_complexity Low_complexity 1 34 0 373 254 42 17 chr13 71842058 71842176 -47902722 + MLT1G1 LTR MaLR 158 278 -317 322 297 12 61 chr13 71842267 71842432 -47902466 + MLT1G1 LTR MaLR 358 514 -28 556 314 89 23 chr13 71842506 71842635 -47902263 + L1MEc LINE L1 1174 1293 -5103 2027 131 30 35 chr13 71842635 71843001 -47901897 - THE1B LTR MaLR 0 364 1 556 314 89 23 chr13 71843001 71843255 -47901643 + L1MEc LINE L1 1293 1529 -4867 183 42 0 0 chr13 71843255 71843279 -47901619 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 556 314 89 23 chr13 71843279 71843535 -47901363 + L1MEc LINE L1 1529 1856 -4540 1132 31 0 0 chr13 71843671 71843800 -47901098 - AluY SINE Alu -182 129 1 1681 149 42 10 chr13 71844564 71844731 -47900167 - AluSx SINE Alu -15 297 116 396 0 0 0 chr13 71844731 71844775 -47900123 + (TG)n Simple_repeat Simple_repeat 2 45 0 1681 149 42 10 chr13 71844775 71844895 -47900003 - AluSx SINE Alu -196 116 1 1866 50 8 0 chr13 71845208 71845447 -47899451 + L1PA5 LINE L1 5913 6153 -1 1796 108 78 0 chr13 71847032 71847290 -47897608 + AluSg SINE Alu 13 290 -20 190 349 79 13 chr13 71847940 71848092 -47896806 - MIR SINE MIR 0 262 101 388 248 53 18 chr13 71849032 71849145 -47895753 - MER69 DNA AcHobo -1710 816 700 273 261 108 15 chr13 71849167 71849297 -47895601 - MER69 DNA AcHobo -1081 145 4 22 70 0 0 chr13 71849563 71849606 -47895292 + AT_rich Low_complexity Low_complexity 1 43 0 938 253 80 64 chr13 71851970 71852409 -47892489 - LTR16A1 LTR ERVL 0 457 12 241 370 55 0 chr13 71852487 71852633 -47892265 - MIR SINE MIR -50 212 59 31 58 0 0 chr13 71852864 71852916 -47891982 + AT_rich Low_complexity Low_complexity 1 52 0 341 186 69 39 chr13 71853533 71853635 -47891263 + MLT1J2 LTR MaLR 2 106 -344 201 336 26 95 chr13 71854351 71854467 -47890431 - L2 LINE L2 -7 3265 3158 783 193 14 7 chr13 71854629 71854774 -47890124 + AluJb SINE Alu 137 282 -30 468 373 83 47 chr13 71855453 71856360 -47888538 - L2 LINE L2 -385 2929 1991 232 250 83 42 chr13 71856362 71856482 -47888416 - L2 LINE L2 -1455 1859 1735 22 35 0 0 chr13 71857459 71857488 -47887410 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr13 71857630 71857666 -47887232 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr13 71858289 71858333 -47886565 + AT_rich Low_complexity Low_complexity 1 44 0 829 122 0 0 chr13 71859150 71859281 -47885617 - L1PA16 LINE L1 -9 6157 6027 355 284 32 32 chr13 71860492 71860647 -47884251 + HAL1b LINE L1 245 399 -949 28 0 0 0 chr13 71861836 71861864 -47883034 + AT_rich Low_complexity Low_complexity 1 28 0 255 31 0 0 chr13 71862725 71862757 -47882141 + (TC)n Simple_repeat Simple_repeat 1 32 0 400 360 91 34 chr13 71862825 71863542 -47881356 + L2 LINE L2 1852 2609 -705 290 317 77 48 chr13 71863610 71863818 -47881080 + MIR SINE MIR 5 218 -44 233 373 63 48 chr13 71864104 71864255 -47880643 - L2 LINE L2 -358 2956 2798 873 269 28 0 chr13 71864255 71864467 -47880431 - MER20 DNA MER1_type 0 219 2 233 373 63 48 chr13 71864467 71864583 -47880315 - L2 LINE L2 -516 2798 2685 2245 68 0 7 chr13 71865007 71865333 -47879565 + AluSg SINE Alu 1 324 0 217 297 68 42 chr13 71865463 71865581 -47879317 + L2 LINE L2 2701 2821 -493 1969 108 4 0 chr13 71865811 71866079 -47878819 + AluSp SINE Alu 1 269 -44 1545 121 0 17 chr13 71867545 71867785 -47877113 + THE1A LTR MaLR 1 236 -119 5765 161 60 47 chr13 71867785 71869258 -47875640 + PABL_A-int LTR ERV1 1732 2729 -2286 2255 103 0 13 chr13 71869258 71869568 -47875330 + AluY SINE Alu 6 311 0 5765 161 60 47 chr13 71869568 71870161 -47874737 + PABL_A-int LTR ERV1 2729 3313 -1702 11536 126 27 25 chr13 71870164 71871483 -47873415 + PABL_A-int LTR ERV1 5307 6633 -904 2743 16 0 0 chr13 71871483 71871791 -47873107 + AluYb8 SINE Alu 1 308 -10 11536 126 27 25 chr13 71871791 71872314 -47872584 + PABL_A-int LTR ERV1 6633 7153 -384 678 161 16 8 chr13 71872316 71872440 -47872458 + LTR54B LTR ERV1 5 129 -369 787 82 116 2 chr13 71872441 71872648 -47872250 + MER57B-int LTR ERV1 7274 7537 0 2202 165 54 7 chr13 71872653 71873059 -47871839 + MER57B LTR ERV1 10 434 0 27 62 0 0 chr13 71874919 71874967 -47869931 + AT_rich Low_complexity Low_complexity 1 48 0 1558 217 0 0 chr13 71875693 71875992 -47868906 - AluJo SINE Alu -9 303 5 3361 107 10 4 chr13 71876621 71877115 -47867783 - L1PA16 LINE L1 -10 6156 5660 1955 114 20 139 chr13 71877115 71877555 -47867343 - L1P4 LINE L1 -355 5811 5424 191 391 0 0 chr13 71877699 71877768 -47867130 - L2 LINE L2 -10 3303 3235 2222 90 33 0 chr13 71879326 71879627 -47865271 - AluSx SINE Alu 0 312 2 312 228 25 0 chr13 71880637 71880716 -47864182 - MLT1J1 LTR MaLR -3 443 363 466 213 0 0 chr13 71881096 71881190 -47863708 - MER92B LTR ERV1 0 636 543 1142 220 124 43 chr13 71881209 71881581 -47863317 - MER92B LTR ERV1 -233 403 2 2070 124 3 16 chr13 71881765 71882071 -47862827 + AluSq SINE Alu 1 302 -11 1375 139 14 0 chr13 71882071 71882294 -47862604 - Tigger1 DNA MER2_type -2192 226 1 2077 137 0 3 chr13 71882366 71882716 -47862182 - AluSx SINE Alu 0 349 1 358 224 51 31 chr13 71882788 71882886 -47862012 + MIR SINE MIR 97 196 -66 23 54 0 0 chr13 71883398 71883435 -47861463 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr13 71883520 71883565 -47861333 + AT_rich Low_complexity Low_complexity 1 45 0 296 319 21 21 chr13 71883666 71883760 -47861138 - MIR SINE MIR -70 138 45 3696 142 0 0 chr13 71884605 71885175 -47859723 + L1PA15 LINE L1 5587 6156 -9 1039 194 161 27 chr13 71888035 71888370 -47856528 - L1MA8 LINE L1 -3 6288 5909 444 19 0 0 chr13 71888375 71888428 -47856470 + (TG)n Simple_repeat Simple_repeat 2 54 0 1389 132 0 0 chr13 71888455 71888652 -47856246 + AluSg/x SINE Alu 87 283 -29 262 309 41 8 chr13 71888932 71889055 -47855843 - MER117 DNA MER1_type -68 129 3 25 0 0 0 chr13 71890472 71890497 -47854401 + AT_rich Low_complexity Low_complexity 1 25 0 236 260 26 0 chr13 71890548 71890625 -47854273 + CT-rich Low_complexity Low_complexity 1 79 0 374 352 75 47 chr13 71890764 71890977 -47853921 - MLT1K LTR MaLR -359 229 11 291 354 47 16 chr13 71891907 71892034 -47852864 - MIR SINE MIR -120 142 12 1518 114 7 39 chr13 71894149 71894430 -47850468 + L1PA7 LINE L1 5883 6154 0 29 60 0 0 chr13 71894532 71894582 -47850316 + AT_rich Low_complexity Low_complexity 1 50 0 394 305 97 54 chr13 71894640 71894971 -47849927 + L1M4 LINE L1 4780 5124 -1022 613 356 78 17 chr13 71895075 71895485 -47849413 + L2 LINE L2 2879 3313 0 22 58 0 43 chr13 71897005 71897074 -47847824 + AT_rich Low_complexity Low_complexity 1 66 0 307 344 0 16 chr13 71897605 71897727 -47847171 + MIR SINE MIR 35 154 -108 183 80 0 0 chr13 71897790 71897815 -47847083 + (TTA)n Simple_repeat Simple_repeat 3 27 0 24 0 0 0 chr13 71898148 71898172 -47846726 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 71899756 71899778 -47845120 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr13 71901392 71901427 -47843471 + AT_rich Low_complexity Low_complexity 1 35 0 482 319 46 29 chr13 71901835 71902076 -47842822 - L2 LINE L2 -241 3072 2828 212 276 132 0 chr13 71902112 71902188 -47842710 - MIR SINE MIR -19 243 158 * 842 333 124 40 chr13 71902183 71903244 -47841654 - L2 LINE L2 -526 2788 1639 261 0 0 0 chr13 71903307 71903336 -47841562 + (TG)n Simple_repeat Simple_repeat 2 30 0 200 206 0 0 chr13 71903377 71903411 -47841487 + (ATG)n Simple_repeat Simple_repeat 1 34 0 222 272 44 88 chr13 71903657 71903793 -47841105 - L2 LINE L2 -1951 1363 1234 617 330 50 45 chr13 71905266 71905666 -47839232 + MLT1J1 LTR MaLR 43 444 -2 499 101 0 38 chr13 71905700 71905779 -47839119 - MADE1 DNA Mariner -4 76 1 1916 142 62 75 chr13 71906980 71907381 -47837517 + MSTD LTR MaLR 1 396 0 710 298 52 30 chr13 71907487 71907853 -47837045 + MLT1J1 LTR MaLR 3 376 -70 1482 170 122 21 chr13 71909801 71910130 -47834768 - MLT1A1 LTR MaLR 0 365 4 279 0 0 0 chr13 71910961 71910992 -47833906 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr13 71911345 71911366 -47833532 + AT_rich Low_complexity Low_complexity 1 21 0 715 11 0 0 chr13 71912607 71912694 -47832204 + L1PA2 LINE L1 6068 6154 -1 394 256 40 24 chr13 71913041 71913166 -47831732 + FLAM_A SINE Alu 1 127 -6 1883 122 17 0 chr13 71913237 71913525 -47831373 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr13 71913919 71913941 -47830957 + AT_rich Low_complexity Low_complexity 1 22 0 217 164 18 18 chr13 71913944 71913999 -47830899 + (TA)n Simple_repeat Simple_repeat 1 55 0 193 379 24 32 chr13 71915733 71915857 -47829041 - MIR SINE MIR -122 140 18 222 304 18 0 chr13 71916011 71916067 -47828831 + MIR SINE MIR 52 108 -154 5796 144 89 22 chr13 71916136 71917289 -47827609 + Tigger3b DNA MER2_type 2 1231 0 21 36 0 0 chr13 71917518 71917546 -47827352 + AT_rich Low_complexity Low_complexity 1 28 0 261 195 23 23 chr13 71918189 71918276 -47826622 + CT-rich Low_complexity Low_complexity 3 89 0 2053 103 0 0 chr13 71919078 71919391 -47825507 - AluSx SINE Alu 0 313 1 2416 48 0 0 chr13 71919960 71920254 -47824644 + AluY SINE Alu 1 294 -17 261 264 97 13 chr13 71921753 71921908 -47822990 + MER112 DNA MER1_type 5 172 -88 1905 139 7 4 chr13 71923030 71923311 -47821587 + AluSx SINE Alu 3 284 -28 444 262 94 13 chr13 71924092 71924241 -47820657 - MLT1J1 LTR MaLR -285 161 1 381 93 0 0 chr13 71924676 71924730 -47820168 + (TA)n Simple_repeat Simple_repeat 1 54 0 228 67 0 0 chr13 71924730 71924760 -47820138 + (GA)n Simple_repeat Simple_repeat 1 30 0 30 45 0 0 chr13 71927720 71927764 -47817134 + AT_rich Low_complexity Low_complexity 1 44 0 228 35 0 0 chr13 71928137 71928166 -47816732 + (CA)n Simple_repeat Simple_repeat 2 30 0 478 237 44 0 chr13 71930287 71930401 -47814497 - MER91C DNA MER1_type -11 129 11 335 314 186 6 chr13 71930406 71930578 -47814320 + L2 LINE L2 2585 2787 -527 314 273 36 48 chr13 71930644 71930809 -47814089 + L2 LINE L2 3020 3182 -131 403 233 67 0 chr13 71931045 71931135 -47813763 + MIR3 SINE MIR 111 206 -2 278 284 12 0 chr13 71931451 71931532 -47813366 - MIR SINE MIR -108 154 73 439 250 0 0 chr13 71932387 71932479 -47812419 - MER45B DNA AcHobo 0 1040 949 2200 96 4 0 chr13 71932503 71932784 -47812114 + AluSp SINE Alu 4 285 -28 1956 131 0 3 chr13 71932810 71933092 -47811806 + AluSq SINE Alu 2 282 -31 234 0 0 0 chr13 71933095 71933121 -47811777 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 830 191 72 5 chr13 71933142 71933188 -47811710 - MER45B DNA AcHobo -646 935 894 207 0 0 0 chr13 71933188 71933211 -47811687 + (TTA)n Simple_repeat Simple_repeat 2 24 0 830 191 72 5 chr13 71933211 71933373 -47811525 - MER45B DNA AcHobo -687 894 713 1010 317 94 53 chr13 71933486 71934217 -47810681 - MER45C DNA AcHobo -183 770 10 313 218 58 23 chr13 71934252 71934339 -47810559 - MIR SINE MIR -98 164 75 297 0 0 0 chr13 71934602 71934635 -47810263 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr13 71934809 71934835 -47810063 + AT_rich Low_complexity Low_complexity 1 26 0 402 339 48 21 chr13 71936535 71936724 -47808174 - MIR SINE MIR -51 211 18 24 0 0 0 chr13 71937345 71937369 -47807529 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 71938079 71938101 -47806797 + AT_rich Low_complexity Low_complexity 1 22 0 504 163 7 78 chr13 71940208 71940349 -47804549 + MSTB2 LTR MaLR 315 445 -12 245 245 70 42 chr13 71940349 71940492 -47804406 + L1MEc LINE L1 2234 2380 -4016 246 180 20 0 chr13 71940653 71940703 -47804195 + LTR40a LTR ERVL 459 509 -10 431 337 26 48 chr13 71941432 71941705 -47803193 + MLT1J LTR MaLR 1 267 -244 1136 306 39 14 chr13 71941715 71942078 -47802820 - MER115 DNA AcHobo -10 683 312 356 386 37 0 chr13 71942146 71942335 -47802563 - MER115 DNA AcHobo -488 205 10 765 218 160 8 chr13 71942398 71942660 -47802238 + MER33 DNA MER1_type 1 302 -22 308 284 12 68 chr13 71942691 71942853 -47802045 + MLT1J LTR MaLR 326 478 -33 254 312 83 0 chr13 71943012 71943121 -47801777 + L2 LINE L2 3196 3313 0 836 175 0 0 chr13 71947206 71947332 -47797566 - AluJo SINE Alu -56 256 131 218 114 0 23 chr13 71947341 71947385 -47797513 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 * 674 144 20 26 chr13 71947382 71947535 -47797363 + CT-rich Low_complexity Low_complexity 2 153 0 379 233 92 0 chr13 71947535 71947655 -47797243 - AluJo SINE Alu -171 131 1 209 370 0 74 chr13 71947950 71948058 -47796840 + L2 LINE L2 3163 3262 -10 1286 223 34 78 chr13 71948139 71948625 -47796273 - MLT1D LTR MaLR -31 474 24 2124 106 0 20 chr13 71948720 71949021 -47795877 + AluSc SINE Alu 1 295 -14 422 289 65 65 chr13 71949118 71949364 -47795534 - MLT1I LTR MaLR -140 269 24 22 70 0 0 chr13 71949457 71949500 -47795398 + AT_rich Low_complexity Low_complexity 1 43 0 1956 157 11 17 chr13 71950501 71950858 -47794040 - THE1A LTR MaLR 0 355 1 10930 116 9 1 chr13 71950858 71952415 -47792483 - THE1A-int LTR MaLR 0 1580 11 1787 184 30 33 chr13 71952419 71952784 -47792114 - THE1B LTR MaLR 0 364 1 376 203 14 0 chr13 71952826 71952895 -47792003 + LTR28 LTR ERV1 1 70 -950 1362 176 35 145 chr13 71952896 71953386 -47791512 + LTR27 LTR ERV1 201 636 0 186 43 0 0 chr13 71954758 71954781 -47790117 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 466 101 0 0 chr13 71955490 71955559 -47789339 - L1PA8 LINE L1 -13 6159 6091 793 328 69 21 chr13 71955862 71956529 -47788369 + Charlie7 DNA MER1_type 9 707 -1905 252 175 10 97 chr13 71956543 71956646 -47788252 + Charlie7 DNA MER1_type 2458 2551 -61 21 36 0 0 chr13 71958206 71958234 -47786664 + AT_rich Low_complexity Low_complexity 1 28 0 567 118 235 0 chr13 71961114 71961216 -47783682 - AluSp/q SINE Alu -19 294 169 283 240 95 50 chr13 71961410 71961589 -47783309 - HAL1 LINE L1 -426 2081 1895 703 287 42 33 chr13 71961596 71961903 -47782995 - HAL1 LINE L1 -661 1846 1537 288 0 0 0 chr13 71961967 71961999 -47782899 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 786 274 121 45 chr13 71962134 71962921 -47781977 + L1ME LINE L1 659 1338 -4942 323 287 57 68 chr13 71962966 71963220 -47781678 + L1ME LINE L1 1573 1692 -4692 229 211 118 0 chr13 71963223 71963299 -47781599 + L1ME LINE L1 1900 1984 -4579 202 114 0 29 chr13 71963306 71963341 -47781557 + (CA)n Simple_repeat Simple_repeat 2 35 0 1022 183 97 23 chr13 71963636 71963893 -47781005 + Tigger3(Golem) DNA MER2_type 2762 3037 0 449 229 77 83 chr13 71963912 71964078 -47780820 + L1ME LINE L1 2506 2672 -3710 231 88 0 0 chr13 71964078 71964112 -47780786 + (TG)n Simple_repeat Simple_repeat 1 34 0 2067 108 4 0 chr13 71964112 71964391 -47780507 - AluSq SINE Alu -33 280 1 449 229 77 83 chr13 71964391 71964550 -47780348 + L1ME LINE L1 2670 2830 -3552 1084 244 82 53 chr13 71964616 71965202 -47779696 + L1ME LINE L1 2941 3543 -2839 686 274 20 30 chr13 71965277 71965573 -47779325 + L1ME1 LINE L1 5870 6162 -4 1561 203 24 71 chr13 71965609 71966018 -47778880 + MLT1B LTR MaLR 1 390 0 29 0 0 0 chr13 71966034 71966063 -47778835 + AT_rich Low_complexity Low_complexity 1 29 0 30 59 0 0 chr13 71967534 71967585 -47777313 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr13 71968955 71968992 -47775906 + AT_rich Low_complexity Low_complexity 1 37 0 1523 109 137 16 chr13 71969214 71969470 -47775428 + AluSg SINE Alu 1 287 -13 30 45 0 0 chr13 71969470 71969514 -47775384 + AT_rich Low_complexity Low_complexity 1 44 0 371 274 102 38 chr13 71969801 71969958 -47774940 + MIR SINE MIR 2 168 -94 439 299 68 7 chr13 71970172 71970319 -47774579 - MIR SINE MIR -48 214 59 774 230 54 5 chr13 71970520 71970742 -47774156 - MER96B DNA MER1_type? -5 412 180 1402 252 52 22 chr13 71970888 71971407 -47773491 - MLT1F LTR MaLR -8 534 9 253 333 53 15 chr13 71971420 71971552 -47773346 + L2 LINE L2 3160 3296 -17 21 57 0 0 chr13 71971752 71971787 -47773111 + AT_rich Low_complexity Low_complexity 1 35 0 1232 196 40 112 chr13 71971899 71972301 -47772597 - MLT1A2 LTR MaLR -1 373 1 205 205 0 0 chr13 71972341 71972380 -47772518 + (TA)n Simple_repeat Simple_repeat 2 40 0 1753 224 12 0 chr13 71972513 71972856 -47772042 + MLT1A1 LTR MaLR 1 347 -18 45 69 0 0 chr13 71972871 71972958 -47771940 + AT_rich Low_complexity Low_complexity 1 87 0 4237 221 73 41 chr13 71973262 71974283 -47770615 + Charlie1a DNA MER1_type 32 1111 -1650 1572 174 25 0 chr13 71974283 71974558 -47770340 + AluJo SINE Alu 1 282 -30 4237 221 73 41 chr13 71974558 71974913 -47769985 + Charlie1a DNA MER1_type 1111 1453 -2 25 0 0 0 chr13 71975772 71975797 -47769101 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr13 71975901 71975945 -47768953 + AT_rich Low_complexity Low_complexity 1 44 0 385 282 94 0 chr13 71977568 71977685 -47767213 + MLT1A1 LTR MaLR 400 527 -22 271 378 37 6 chr13 71977869 71978033 -47766865 - MIR SINE MIR -13 249 81 287 309 10 52 chr13 71978303 71978400 -47766498 - L2 LINE L2 -1 3271 3179 459 180 58 101 chr13 71978438 71978577 -47766321 - MER63 DNA MER1_type -71 765 7 21 0 0 0 chr13 71978718 71978739 -47766159 + AT_rich Low_complexity Low_complexity 1 21 0 313 265 54 14 chr13 71978831 71978978 -47765920 + L1ME LINE L1 2340 2492 -3654 2196 116 0 0 chr13 71979493 71979787 -47765111 - AluSq SINE Alu -19 294 1 279 316 39 16 chr13 71979814 71980065 -47764833 + L1P LINE L1 3617 3871 -2275 618 311 76 35 chr13 71980236 71980695 -47764203 + L1ME LINE L1 4107 4584 -1562 3172 90 68 28 chr13 71980856 71981355 -47763543 - MER41A LTR ERV1 -35 519 1 5486 73 23 4 chr13 71981359 71982111 -47762787 - MER4E LTR ERV1 0 766 1 294 295 285 0 chr13 71982116 71982316 -47762582 - MIR SINE MIR -3 259 3 231 337 0 0 chr13 71982336 71982419 -47762479 + L1ME LINE L1 4766 4848 -1298 439 273 67 14 chr13 71983008 71983217 -47761681 + L1ME LINE L1 4946 5165 -981 565 297 55 50 chr13 71983445 71983667 -47761231 + L1ME LINE L1 5372 5591 -571 1768 152 55 25 chr13 71983667 71984029 -47760869 + THE1C LTR MaLR 3 375 0 565 297 55 50 chr13 71984029 71984255 -47760643 + L1ME LINE L1 5591 5824 -338 2023 112 25 0 chr13 71984268 71984553 -47760345 - AluSg SINE Alu -18 292 1 238 247 39 0 chr13 71985321 71985398 -47759500 + L1MEd LINE L1 679 758 -5361 303 265 0 0 chr13 71985558 71985626 -47759272 + L2 LINE L2 3228 3295 -18 278 256 13 26 chr13 71985674 71985752 -47759146 - L2 LINE L2 -1044 2270 2194 710 292 67 62 chr13 71985895 71986330 -47758568 + L1MC4a LINE L1 6541 6977 -831 1104 236 132 72 chr13 71986659 71987075 -47757823 + MLT2B1 LTR ERVL 8 448 -72 243 0 0 0 chr13 71987131 71987158 -47757740 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 255 62 58 chr13 71987323 71987531 -47757367 + L1MC5 LINE L1 7302 7510 -451 625 225 33 88 chr13 71987858 71987933 -47756965 + MER106A DNA MER1_type 6 84 -152 2990 163 65 15 chr13 71987933 71988516 -47756382 - LTR9 LTR ERV1 0 612 1 625 225 33 88 chr13 71988516 71988603 -47756295 + MER106A DNA MER1_type 84 153 -83 2372 64 14 0 chr13 71988603 71988900 -47755998 + AluY SINE Alu 1 301 -10 625 225 33 88 chr13 71988900 71988976 -47755922 + MER106A DNA MER1_type 153 232 -4 24 53 0 0 chr13 71989020 71989058 -47755840 + AT_rich Low_complexity Low_complexity 1 38 0 1504 231 16 24 chr13 71989327 71989704 -47755194 + MLT1A2 LTR MaLR 1 374 0 313 175 32 16 chr13 71990419 71990482 -47754416 - LTR45 LTR ERV1 -2 523 460 484 221 153 0 chr13 71990493 71990624 -47754274 - MER97a DNA MER1_type? -260 634 484 1680 145 57 14 chr13 71990628 71990925 -47753973 - L1PB4 LINE L1 -8 6148 5839 234 250 0 0 chr13 71990926 71990982 -47753916 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 243 179 36 71 chr13 71990982 71991066 -47753832 - L1MC4 LINE L1 -1347 6695 6615 2018 173 20 2 chr13 71991095 71991642 -47753256 - L1PB4 LINE L1 -378 5778 5177 2404 88 0 0 chr13 71991643 71991950 -47752948 - AluY SINE Alu -4 307 1 637 192 40 8 chr13 71991970 71992095 -47752803 - LTR45B LTR ERV1 -49 440 312 320 247 137 34 chr13 71992081 71992227 -47752671 - LTR45B LTR ERV1 -103 386 226 * 1996 221 67 6 chr13 71992307 71992787 -47752111 - LTR22 LTR ERVK 0 509 1 20909 114 10 3 chr13 71992787 71995941 -47748957 - HERVK22 LTR ERVK 0 6837 2333 5635 113 30 45 chr13 71995942 71996858 -47748040 - HERVK22 LTR ERVK -5933 904 3 1940 195 15 23 chr13 71996860 71997342 -47747556 - LTR22 LTR ERVK 0 458 1 532 260 0 8 chr13 71997408 71997535 -47747363 - LTR45B LTR ERV1 -361 128 3 933 324 43 6 chr13 71997672 71998103 -47746795 + MLT1J LTR MaLR 1 500 -11 3863 287 113 42 chr13 71998519 72000668 -47744230 + L1PA12 LINE L1 8 2308 -5273 2236 74 3 3 chr13 72000671 72000956 -47743942 + AluY SINE Alu 1 285 -26 10406 230 20 8 chr13 72000958 72002116 -47742782 + L1PA12 LINE L1 2786 3928 -3656 360 0 0 0 chr13 72002116 72002156 -47742742 + (CA)n Simple_repeat Simple_repeat 1 40 0 10406 230 20 8 chr13 72002156 72003704 -47741194 + L1PA12 LINE L1 3928 5538 -2046 1340 123 10 0 chr13 72003704 72003908 -47740990 - L1PA15 LINE L1 -560 5605 5400 3255 139 32 0 chr13 72003908 72004432 -47740466 + L1PA15 LINE L1 5625 6165 0 683 249 75 40 chr13 72004650 72004851 -47740047 - MER20 DNA MER1_type -9 210 3 233 85 0 102 chr13 72004886 72004945 -47739953 - L1MA7 LINE L1 0 6291 6239 828 130 7 29 chr13 72004945 72005083 -47739815 + FRAM SINE Alu 39 173 -3 401 158 0 81 chr13 72005106 72005206 -47739692 - L1MA7 LINE L1 -49 6242 6160 245 232 0 18 chr13 72005339 72005395 -47739503 + Tigger5 DNA MER2_type 2265 2319 -4 424 203 14 0 chr13 72005424 72005498 -47739400 + Tigger5 DNA MER2_type 2249 2323 0 4118 162 53 6 chr13 72005592 72006381 -47738517 - LTR1B LTR ERV1 0 826 1 783 217 42 24 chr13 72006561 72006773 -47738125 - L1MD2 LINE L1 -17 6342 6127 21 0 0 0 chr13 72007267 72007288 -47737610 + AT_rich Low_complexity Low_complexity 1 21 0 480 35 0 0 chr13 72007675 72007733 -47737165 + (GA)n Simple_repeat Simple_repeat 1 58 0 538 165 85 40 chr13 72008306 72008482 -47736416 - MER53 DNA DNA -1 188 5 24 77 0 0 chr13 72009014 72009066 -47735832 + AT_rich Low_complexity Low_complexity 1 52 0 204 40 0 0 chr13 72009350 72009375 -47735523 + (TC)n Simple_repeat Simple_repeat 1 25 0 3140 256 74 36 chr13 72012378 72013574 -47731324 + L1ME1 LINE L1 53 1293 -5103 313 320 16 24 chr13 72013657 72013782 -47731116 + L1ME1 LINE L1 1386 1509 -4706 1222 280 52 24 chr13 72013799 72014545 -47730353 + L1ME1 LINE L1 2896 3662 -2553 1682 212 64 82 chr13 72014545 72015157 -47729741 + L1ME1 LINE L1 5590 6190 -45 235 244 44 52 chr13 72015060 72015195 -47729703 + L1MA10 LINE L1 6249 6382 -21 * 457 250 214 10 chr13 72015589 72015781 -47729117 - MIR SINE MIR -29 233 3 24 0 0 0 chr13 72016764 72016788 -47728110 + AT_rich Low_complexity Low_complexity 1 24 0 36 0 0 0 chr13 72017253 72017289 -47727609 + AT_rich Low_complexity Low_complexity 1 36 0 282 29 0 0 chr13 72017343 72017378 -47727520 + (CA)n Simple_repeat Simple_repeat 2 36 0 2830 189 17 9 chr13 72017429 72017688 -47727210 - L1MB3 LINE L1 -8 7135 6880 1848 161 3 0 chr13 72017688 72017979 -47726919 - AluJo SINE Alu -14 298 7 2830 189 17 9 chr13 72017979 72018297 -47726601 - L1MB3 LINE L1 -263 6880 6553 1091 181 40 22 chr13 72018313 72018590 -47726308 - L1MA4A LINE L1 -7 6296 6015 910 252 13 50 chr13 72018590 72018910 -47725988 - L1 LINE L1 -3743 3822 3511 3239 114 92 27 chr13 72018917 72019502 -47725396 - L1MA4A LINE L1 -300 6003 5381 * 8783 231 85 30 chr13 72019487 72023201 -47721697 - L1 LINE L1 -2917 3931 10 7655 244 41 40 chr13 72023212 72026455 -47718443 - L1MB3 LINE L1 -580 6563 3347 2022 137 0 0 chr13 72026455 72026739 -47718159 + AluSg SINE Alu 9 292 -18 7655 244 41 40 chr13 72026739 72026911 -47717987 - L1MB3 LINE L1 -3796 3347 3177 266 159 14 14 chr13 72026931 72027000 -47717898 - L1M4 LINE L1 -984 5162 5094 1224 139 27 0 chr13 72027011 72027198 -47717700 - AluSg/x SINE Alu 0 312 121 1038 198 53 0 chr13 72027198 72027445 -47717453 - L1MB3 LINE L1 -3943 3165 2906 2346 117 35 16 chr13 72027445 72027813 -47717085 - THE1C LTR MaLR 0 375 1 8572 139 61 41 chr13 72027813 72029362 -47715536 - THE1C-int LTR MaLR 0 1580 1 841 162 69 40 chr13 72029362 72029535 -47715363 - THE1C LTR MaLR 0 375 198 736 251 0 5 chr13 72029537 72029744 -47715154 + L1PA14 LINE L1 4326 4531 -1615 505 191 38 19 chr13 72029744 72029856 -47715042 - MSTA LTR MaLR 0 428 248 1943 112 192 3 chr13 72029857 72030195 -47714703 - THE1C-int LTR MaLR -1175 405 4 628 169 59 23 chr13 72030198 72030344 -47714554 - THE1C LTR MaLR 0 375 237 412 179 0 13 chr13 72030412 72030490 -47714408 - THE1C LTR MaLR -351 77 1 4186 157 31 22 chr13 72030493 72031372 -47713526 + L1PA14 LINE L1 4530 5489 -672 1820 113 4 8 chr13 72031372 72031638 -47713260 + AluSx SINE Alu 48 312 0 4186 157 31 22 chr13 72031638 72032316 -47712582 + L1PA14 LINE L1 5489 6159 -2 426 153 0 0 chr13 72032318 72032390 -47712508 + L1MB2 LINE L1 6083 6154 -17 2036 99 53 0 chr13 72032406 72032688 -47712210 + AluSq SINE Alu 3 299 -14 527 137 32 24 chr13 72032691 72032815 -47712083 + CT-rich Low_complexity Low_complexity 2 126 0 2841 115 63 8 chr13 72032832 72033309 -47711589 - L1PB2 LINE L1 -7 6144 5642 1989 300 22 31 chr13 72033309 72033990 -47710908 - L1MB3 LINE L1 -5559 1547 213 6308 92 3 13 chr13 72034580 72035757 -47709141 - L1PA11 LINE L1 -1 6173 5017 1902 60 16 12 chr13 72035757 72036007 -47708891 - AluSp SINE Alu -6 307 57 6308 92 3 13 chr13 72036007 72036369 -47708529 - L1PA11 LINE L1 -1157 5017 4653 2640 160 38 28 chr13 72036369 72036899 -47707999 - L1M4c LINE L1 -4408 3159 2625 2038 144 3 0 chr13 72036899 72037197 -47707701 - AluSx SINE Alu -13 299 1 393 191 67 11 chr13 72037247 72037336 -47707562 - L1M4c LINE L1 -7471 94 1 3892 195 8 27 chr13 72037436 72038206 -47706692 - L1M4c LINE L1 -5614 770 16 230 308 90 54 chr13 72038894 72039043 -47705855 - MIR3 SINE MIR -53 155 4 207 272 11 22 chr13 72039103 72039195 -47705703 + (TATATG)n Simple_repeat Simple_repeat 5 95 0 1233 230 35 18 chr13 72039705 72039988 -47704910 + AluJo SINE Alu 2 289 -13 200 255 0 0 chr13 72041931 72041978 -47702920 + CT-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr13 72042272 72042293 -47702605 + AT_rich Low_complexity Low_complexity 1 21 0 239 289 13 26 chr13 72044121 72044197 -47700701 - L2 LINE L2 -5 3308 3234 213 287 82 41 chr13 72044249 72044371 -47700527 - L2 LINE L2 -84 3229 3103 205 371 8 24 chr13 72046179 72046303 -47698595 - MIR SINE MIR -71 137 16 285 266 0 0 chr13 72046406 72046485 -47698413 + T-rich Low_complexity Low_complexity 1 79 0 24 0 0 0 chr13 72046905 72046929 -47697969 + AT_rich Low_complexity Low_complexity 1 24 0 746 176 57 50 chr13 72046929 72047088 -47697810 - FRAM SINE Alu -6 160 1 192 158 0 0 chr13 72047611 72047649 -47697249 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 190 0 67 0 chr13 72048211 72048241 -47696657 + (TA)n Simple_repeat Simple_repeat 2 33 0 41 21 0 0 chr13 72048692 72048740 -47696158 + AT_rich Low_complexity Low_complexity 1 48 0 22 70 0 0 chr13 72049228 72049271 -47695627 + AT_rich Low_complexity Low_complexity 1 43 0 605 328 29 13 chr13 72049796 72050034 -47694864 - MIR SINE MIR -4 258 17 227 287 23 0 chr13 72050322 72050409 -47694489 + L1MC4 LINE L1 6615 6703 -1339 260 315 56 6 chr13 72050940 72051118 -47693780 + L1P LINE L1 5212 5398 -748 228 297 74 65 chr13 72051162 72051391 -47693507 + L1MC/D LINE L1 5694 5924 -1884 2228 188 50 2 chr13 72052151 72052629 -47692269 - L1PA13 LINE L1 -790 5356 4856 * 5640 107 0 6 chr13 72052626 72053450 -47691448 + L1PA13 LINE L1 5341 6159 -4 6099 125 89 69 chr13 72053522 72054762 -47690136 + pTR5 LTR ERV1 1174 2438 0 1275 302 49 9 chr13 72054944 72055468 -47689430 - L2 LINE L2 -2 3311 2771 24 53 0 0 chr13 72056676 72056714 -47688184 + AT_rich Low_complexity Low_complexity 1 38 0 192 283 0 0 chr13 72058279 72058325 -47686573 + L2 LINE L2 3192 3237 -76 670 161 153 0 chr13 72058375 72058499 -47686399 - FRAM SINE Alu -11 165 23 42 57 0 0 chr13 72058578 72058648 -47686250 + AT_rich Low_complexity Low_complexity 1 70 0 22 70 0 0 chr13 72059565 72059608 -47685290 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 72060065 72060086 -47684812 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr13 72060234 72060265 -47684633 + AT_rich Low_complexity Low_complexity 1 31 0 1379 211 53 77 chr13 72060400 72060774 -47684124 - MLT2C2 LTR ERVL -5 459 97 3342 150 45 15 chr13 72060774 72061368 -47683530 - LTR9 LTR ERV1 0 612 1 1379 211 53 77 chr13 72061368 72061463 -47683435 - MLT2C2 LTR ERVL -367 97 1 363 109 18 0 chr13 72062165 72062220 -47682678 - THE1B LTR MaLR 0 364 309 1829 224 28 13 chr13 72064329 72064787 -47680111 - MLT2B1 LTR ERVL 0 464 1 24 0 0 0 chr13 72065696 72065720 -47679178 + AT_rich Low_complexity Low_complexity 1 24 0 289 298 32 0 chr13 72065832 72065926 -47678972 + MLT1J1 LTR MaLR 339 435 -11 378 74 0 0 chr13 72066752 72066806 -47678092 + (TG)n Simple_repeat Simple_repeat 2 55 0 321 311 226 39 chr13 72067028 72067285 -47677613 + MLT1J2 LTR MaLR 14 318 -132 1762 229 63 65 chr13 72067303 72067858 -47677040 + MLT2B3 LTR ERVL 1 554 0 294 357 158 30 chr13 72067934 72068681 -47676217 - L2 LINE L2 -626 2688 1846 1532 189 3 47 chr13 72068752 72069070 -47675828 - AluJb SINE Alu -4 308 5 775 280 64 60 chr13 72069089 72069542 -47675356 + LTR16A1 LTR ERVL 3 457 0 355 105 11 137 chr13 72069724 72069819 -47675079 - MER53 DNA DNA -4 185 103 466 202 11 0 chr13 72069944 72070038 -47674860 - MER53 DNA DNA -94 95 1 1937 249 55 14 chr13 72070248 72070306 -47674592 - ERVL-B1 LTR ERVL -4949 815 761 1684 38 0 9 chr13 72070306 72070518 -47674380 - L1PA5 LINE L1 0 6154 5945 1937 249 55 14 chr13 72070518 72070969 -47673929 - ERVL-B1 LTR ERVL -5003 761 285 479 304 0 18 chr13 72071008 72071176 -47673722 - ERVL-B1 LTR ERVL -5466 188 24 28 0 0 0 chr13 72071201 72071229 -47673669 + AT_rich Low_complexity Low_complexity 1 28 0 733 246 94 13 chr13 72071263 72071487 -47673411 - MLT2B1 LTR ERVL 0 520 279 222 150 0 0 chr13 72071525 72071565 -47673333 + (TC)n Simple_repeat Simple_repeat 2 41 0 528 103 41 0 chr13 72071609 72071706 -47673192 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 484 189 0 32 chr13 72072527 72072622 -47672276 + FLAM SINE Alu 38 129 -14 813 288 126 12 chr13 72072680 72073013 -47671885 - MLT1B LTR MaLR -19 371 1 1515 281 81 54 chr13 72073043 72073197 -47671701 + L1M4 LINE L1 1077 1225 -5419 1729 199 0 0 chr13 72073197 72073489 -47671409 + AluJo SINE Alu 3 294 -18 1515 281 81 54 chr13 72073489 72074656 -47670242 + L1M4 LINE L1 1225 2359 -4285 1664 193 42 0 chr13 72074656 72074987 -47669911 - MER7A DNA MER2_type 0 346 4 1515 281 81 54 chr13 72074987 72075904 -47668994 + L1M4 LINE L1 2359 3508 -3136 1532 160 143 80 chr13 72075906 72076332 -47668566 + MLT2B1 LTR ERVL 1 453 -67 297 128 0 0 chr13 72076338 72076385 -47668513 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 272 302 8 8 chr13 72076428 72076557 -47668341 + L1M4 LINE L1 3532 3660 -2984 383 297 30 23 chr13 72076558 72076821 -47668077 + L1MCc LINE L1 19 283 -6140 1697 175 25 20 chr13 72077151 72077506 -47667392 + L1MA9 LINE L1 5895 6251 -61 428 301 57 24 chr13 72077685 72077894 -47667004 + L1MCc LINE L1 1023 1238 -5185 1220 263 89 33 chr13 72077967 72078598 -47666300 - L1M4 LINE L1 -2213 4744 4079 1138 246 31 57 chr13 72078607 72079095 -47665803 - L1M4 LINE L1 -5179 1680 1206 338 323 39 7 chr13 72079162 72079317 -47665581 - L1M4 LINE L1 -5667 1188 1029 326 287 49 54 chr13 72079706 72079929 -47664969 - L1M4 LINE L1 -6569 290 69 332 353 13 0 chr13 72080007 72080157 -47664741 + MERVL LTR ERVL 4452 4603 -882 1364 213 43 56 chr13 72080310 72080705 -47664193 - MLT1B LTR MaLR 0 390 1 423 319 72 54 chr13 72081302 72081675 -47663223 + LTR16A1 LTR ERVL 58 437 -20 22 56 0 0 chr13 72083556 72083592 -47661306 + AT_rich Low_complexity Low_complexity 1 36 0 319 179 0 24 chr13 72084097 72084181 -47660717 + (TA)n Simple_repeat Simple_repeat 1 82 0 246 197 30 15 chr13 72084194 72084260 -47660638 - L1MC4 LINE L1 -1340 6702 6636 300 111 0 0 chr13 72084262 72084307 -47660591 + (CA)n Simple_repeat Simple_repeat 2 46 0 512 320 40 20 chr13 72085140 72085340 -47659558 - L3 LINE CR1 -604 973 770 672 19 19 39 chr13 72085432 72085535 -47659363 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 1878 143 86 17 chr13 72085536 72085886 -47659012 - MER57A LTR ERV1 -28 375 2 369 150 0 0 chr13 72085887 72085947 -47658951 - MER57A-int LTR ERV1 -6 7531 7472 2381 140 12 9 chr13 72086103 72086524 -47658374 - L1MA8 LINE L1 -6 6285 5864 222 171 0 0 chr13 72086564 72086605 -47658293 + (CATA)n Simple_repeat Simple_repeat 2 42 0 872 305 116 24 chr13 72087932 72088737 -47656161 - L2 LINE L2 -40 3273 2391 22 0 0 0 chr13 72089872 72089894 -47655004 + AT_rich Low_complexity Low_complexity 1 22 0 1853 304 94 41 chr13 72089925 72090806 -47654092 + L1M4 LINE L1 9 936 -5923 1862 92 4 8 chr13 72091031 72091292 -47653606 + AluSq SINE Alu 52 311 -2 1645 249 65 71 chr13 72091602 72092766 -47652132 + L1M4 LINE L1 1213 2326 -4633 283 185 12 37 chr13 72092937 72093018 -47651880 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 473 258 31 0 chr13 72093018 72093146 -47651752 + MLT1C LTR MaLR 6 137 -253 9245 86 6 18 chr13 72093146 72095262 -47649636 - L1PA7 LINE L1 -1 6153 4051 19681 118 2 21 chr13 72095262 72098419 -47646479 + L1PA7 LINE L1 931 4030 -2116 936 217 58 100 chr13 72098419 72098778 -47646120 + MLT1C LTR MaLR 121 464 -3 1755 200 35 32 chr13 72098942 72099312 -47645586 - MLT1B LTR MaLR 0 390 20 966 268 43 27 chr13 72099470 72099798 -47645100 + MLT1D LTR MaLR 150 482 -23 401 138 0 15 chr13 72099830 72099895 -47645003 - MLT1C LTR MaLR 0 467 404 2789 179 33 7 chr13 72099922 72100465 -47644433 + L1MB2 LINE L1 5614 6170 -1 1389 242 43 18 chr13 72100524 72100921 -47643977 - MLT1C LTR MaLR -50 417 11 678 275 38 36 chr13 72100985 72101502 -47643396 + L1M4 LINE L1 2683 3204 -3753 422 260 0 0 chr13 72101503 72101607 -47643291 + L1M4 LINE L1 5497 5600 -1357 321 219 0 0 chr13 72101617 72101690 -47643208 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 1164 252 18 58 chr13 72101692 72102140 -47642758 + L1M4 LINE L1 5604 6033 -924 243 88 0 0 chr13 72103707 72103741 -47641157 + (CA)n Simple_repeat Simple_repeat 2 35 0 25 31 0 0 chr13 72104205 72104237 -47640661 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr13 72105196 72105224 -47639674 + AT_rich Low_complexity Low_complexity 1 28 0 33 66 0 0 chr13 72105333 72105394 -47639504 + AT_rich Low_complexity Low_complexity 1 61 0 214 359 94 28 chr13 72106257 72106469 -47638429 + MIR SINE MIR 34 259 -3 237 33 0 0 chr13 72107150 72107180 -47637718 + (TG)n Simple_repeat Simple_repeat 1 30 0 33 75 0 11 chr13 72107386 72107414 -47637484 + AT_rich Low_complexity Low_complexity 1 28 -64 1775 160 4 0 chr13 72107414 72107695 -47637203 + AluSx SINE Alu 1 282 -30 33 75 0 11 chr13 72107695 72107759 -47637139 + AT_rich Low_complexity Low_complexity 28 92 0 45 96 0 0 chr13 72108513 72108649 -47636249 + AT_rich Low_complexity Low_complexity 1 136 0 210 118 0 0 chr13 72109179 72109213 -47635685 + (T)n Simple_repeat Simple_repeat 1 34 0 1354 192 91 53 chr13 72109303 72109719 -47635179 + MSTB1 LTR MaLR 1 432 0 238 318 0 0 chr13 72109837 72109903 -47634995 - MLT1I LTR MaLR -276 133 68 817 194 71 0 chr13 72110153 72110308 -47634590 + LTR40b LTR ERVL 1 166 -296 475 295 26 19 chr13 72110428 72110696 -47634202 - L1M4 LINE L1 -3506 2640 2371 24 0 0 0 chr13 72111365 72111389 -47633509 + AT_rich Low_complexity Low_complexity 1 24 0 444 19 0 0 chr13 72111895 72111948 -47632950 + (TA)n Simple_repeat Simple_repeat 1 53 0 1252 208 90 5 chr13 72111979 72112379 -47632519 - Charlie5 DNA MER1_type 0 2623 2190 251 261 0 8 chr13 72112452 72112571 -47632327 + GA-rich Low_complexity Low_complexity 3 120 0 245 295 77 60 chr13 72112954 72113137 -47631761 + HAL1 LINE L1 1458 1643 -864 1809 106 13 74 chr13 72113192 72113504 -47631394 + AluSc SINE Alu 1 293 -16 26 88 0 0 chr13 72113983 72114051 -47630847 + AT_rich Low_complexity Low_complexity 1 68 0 204 228 0 0 chr13 72114162 72114219 -47630679 + T-rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr13 72117668 72117689 -47627209 + AT_rich Low_complexity Low_complexity 1 21 0 2008 123 10 3 chr13 72117691 72117993 -47626905 + AluSq SINE Alu 1 304 -9 245 51 26 0 chr13 72118570 72118609 -47626289 + (TG)n Simple_repeat Simple_repeat 2 41 0 213 241 11 103 chr13 72118624 72118711 -47626187 + L2 LINE L2 2688 2766 -548 260 103 0 0 chr13 72118817 72118856 -47626042 + L1MCa LINE L1 2201 2239 -4187 959 117 0 0 chr13 72118872 72119000 -47625898 + AluSg/x SINE Alu 162 289 -23 920 205 82 75 chr13 72119013 72119494 -47625404 + L1MCa LINE L1 2345 2811 -3615 5580 150 40 1 chr13 72119540 72120975 -47623923 - L1PA14 LINE L1 -4 6157 4663 1716 243 41 42 chr13 72120997 72121775 -47623123 + L1MCa LINE L1 2877 3653 -2773 198 323 115 10 chr13 72122195 72122291 -47622607 + L2 LINE L2 3208 3313 0 189 107 0 0 chr13 72123482 72123510 -47621388 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 288 328 62 51 chr13 72123779 72124035 -47620863 + MER68 LTR ERV1 277 535 -27 1371 141 36 4 chr13 72124167 72124415 -47620483 + L1MB3 LINE L1 5919 6174 -9 21 57 0 0 chr13 72124416 72124451 -47620447 + AT_rich Low_complexity Low_complexity 1 35 0 334 328 0 25 chr13 72125155 72125277 -47619621 + MLT1I LTR MaLR 60 178 -231 527 224 8 67 chr13 72128241 72128375 -47616523 + FLAM_A SINE Alu 1 126 -7 2127 82 7 0 chr13 72128406 72128749 -47616149 - AluY SINE Alu 0 345 1 32 26 0 0 chr13 72129286 72129325 -47615573 + AT_rich Low_complexity Low_complexity 1 39 0 439 364 24 24 chr13 72129412 72129618 -47615280 - MIR SINE MIR -37 225 20 21 0 0 0 chr13 72130441 72130462 -47614436 + AT_rich Low_complexity Low_complexity 1 21 0 1318 227 59 12 chr13 72130470 72130875 -47614023 + L1MC4 LINE L1 7238 7661 -381 882 245 98 61 chr13 72130877 72131318 -47613580 - MLT1D LTR MaLR 0 505 49 2315 95 0 0 chr13 72131550 72131855 -47613043 - AluSq SINE Alu -8 305 1 330 138 0 0 chr13 72133490 72133548 -47611350 + (CA)n Simple_repeat Simple_repeat 2 59 0 183 205 0 0 chr13 72134441 72134480 -47610418 + (TTG)n Simple_repeat Simple_repeat 2 40 0 449 272 184 0 chr13 72134669 72134816 -47610082 + MER5A DNA MER1_type 15 188 -1 2511 237 38 29 chr13 72135945 72136680 -47608218 - L1MC4 LINE L1 0 8042 7301 1505 199 7 0 chr13 72137964 72138236 -47606662 - AluSx SINE Alu -38 274 1 1370 233 71 54 chr13 72138313 72138777 -47606121 - MLT1D LTR MaLR -4 501 30 249 237 0 82 chr13 72139441 72139538 -47605360 + L1MC4 LINE L1 6614 6702 -1340 258 266 51 0 chr13 72139582 72139661 -47605237 + L1MC4 LINE L1 6620 6702 -1340 241 206 82 0 chr13 72139645 72139718 -47605180 - L1MC4 LINE L1 -1340 6702 6624 * 198 71 0 0 chr13 72139718 72139746 -47605152 + (CA)n Simple_repeat Simple_repeat 2 29 0 1924 139 13 0 chr13 72140120 72140422 -47604476 + AluSx SINE Alu 1 306 -6 2109 91 0 7 chr13 72140424 72140783 -47604115 + AluSx SINE Alu 1 357 0 320 208 117 0 chr13 72140832 72140909 -47603989 + MIR SINE MIR 124 209 -53 270 0 0 0 chr13 72141648 72141678 -47603220 + (TG)n Simple_repeat Simple_repeat 2 31 0 7651 23 0 1 chr13 72143352 72144479 -47600419 + L1PA3 LINE L1 5031 6152 -3 372 323 35 40 chr13 72144854 72145055 -47599843 - L2 LINE L2 -5 3308 3109 3673 261 97 67 chr13 72145485 72148202 -47596696 + L1ME1 LINE L1 2111 4744 -1402 2077 226 102 63 chr13 72148202 72148997 -47595901 - LTR1B LTR ERV1 0 826 1 3673 261 97 67 chr13 72148997 72149252 -47595646 + L1ME1 LINE L1 4744 4990 -1156 2083 155 0 0 chr13 72149252 72149561 -47595337 + AluSx SINE Alu 2 310 -2 3673 261 97 67 chr13 72149561 72149658 -47595240 + L1ME1 LINE L1 4990 5274 -872 719 223 173 97 chr13 72149723 72150185 -47594713 + L1ME1 LINE L1 5439 5935 -229 921 143 0 0 chr13 72150193 72150326 -47594572 + AluSx SINE Alu 5 137 -175 6596 150 18 23 chr13 72150333 72151507 -47593391 + L1P LINE L1 11 1178 -4968 7853 68 2 3 chr13 72151514 72153314 -47591584 + L1PA6 LINE L1 4335 6141 -13 186 43 0 0 chr13 72153319 72153342 -47591556 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr13 72153345 72153367 -47591531 + AT_rich Low_complexity Low_complexity 1 22 0 963 166 0 0 chr13 72153367 72153549 -47591349 + AluSx SINE Alu 134 315 0 442 278 64 60 chr13 72153549 72153783 -47591115 + L1ME1 LINE L1 5928 6162 -4 293 54 0 0 chr13 72153850 72153887 -47591011 - MADE1 DNA Mariner -36 44 8 1887 167 23 0 chr13 72155622 72155927 -47588971 + AluSx SINE Alu 1 312 0 993 182 96 93 chr13 72156058 72156078 -47588820 + LTR52 LTR ERVL 1 19 -402 2428 60 0 0 chr13 72156078 72156380 -47588518 - AluY SINE Alu -9 302 1 993 182 96 93 chr13 72156380 72156777 -47588121 + LTR52 LTR ERVL 19 419 -2 513 208 46 8 chr13 72156778 72156908 -47587990 + LTR52-int LTR ERVL 3 137 -3419 1747 233 16 88 chr13 72156908 72157388 -47587510 + HERVL74 LTR ERVL 1600 2042 -3643 2800 196 138 28 chr13 72157388 72158132 -47586766 - LTR1B LTR ERV1 0 826 1 1747 233 16 88 chr13 72158132 72158161 -47586737 + HERVL74 LTR ERVL 2042 2072 -3613 372 247 0 0 chr13 72158312 72158393 -47586505 + LTR52 LTR ERVL 306 386 -35 357 189 11 22 chr13 72159542 72159632 -47585266 - L1MA10 LINE L1 -2 6332 6244 497 266 38 64 chr13 72159708 72159975 -47584923 + MLT1G1 LTR MaLR 61 320 -275 220 191 0 0 chr13 72159975 72160017 -47584881 + GA-rich Low_complexity Low_complexity 2 43 0 443 236 211 37 chr13 72161522 72161769 -47583129 + MLT1G LTR MaLR 20 310 -239 1192 241 47 66 chr13 72162970 72163335 -47581563 - MLT1A1 LTR MaLR -7 358 1 27 81 0 0 chr13 72163531 72163593 -47581305 + AT_rich Low_complexity Low_complexity 1 62 0 420 364 110 11 chr13 72165090 72165354 -47579544 - L3 LINE CR1 -138 1439 1150 27 29 0 0 chr13 72167438 72167472 -47577426 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr13 72167545 72167596 -47577302 + AT_rich Low_complexity Low_complexity 1 51 0 276 39 39 20 chr13 72168082 72168133 -47576765 + (TTTTA)n Simple_repeat Simple_repeat 1 52 0 393 22 0 0 chr13 72168133 72168179 -47576719 - L1HS LINE L1 -24 6131 6086 1076 239 7 86 chr13 72168439 72168870 -47576028 + MLT2C1 LTR ERVL 1 397 0 182 271 68 17 chr13 72170030 72170089 -47574809 - L2 LINE L2 0 3313 3252 25 31 0 0 chr13 72170180 72170212 -47574686 + AT_rich Low_complexity Low_complexity 1 32 0 327 293 179 14 chr13 72170804 72170944 -47573954 + MER5A DNA MER1_type 27 189 0 1069 280 74 48 chr13 72171923 72172449 -47572449 - MLT1G1 LTR MaLR 0 595 19 2373 135 3 3 chr13 72172548 72172912 -47571986 + THE1B LTR MaLR 1 364 0 210 122 49 0 chr13 72173234 72173275 -47571623 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 402 199 106 3 chr13 72173343 72173448 -47571450 + MLT1H LTR MaLR 428 510 -39 2056 110 7 0 chr13 72174474 72174756 -47570142 - AluSc SINE Alu -12 297 14 228 319 77 71 chr13 72174902 72175266 -47569632 + MLT1K LTR MaLR 217 582 -6 273 270 0 0 chr13 72175788 72175862 -47569036 - MLT1I LTR MaLR -26 383 310 318 286 24 24 chr13 72175984 72176110 -47568788 - MLT1H LTR MaLR -377 172 47 2197 128 105 8 chr13 72177492 72177882 -47567016 - MSTA LTR MaLR 0 428 1 316 208 195 39 chr13 72179302 72179456 -47565442 - L2 LINE L2 -91 3222 3045 1366 231 14 14 chr13 72179468 72179758 -47565140 + Tigger7 DNA MER2_type 9 298 -2189 * 1445 176 80 33 chr13 72179756 72180092 -47564806 + Tigger7 DNA MER2_type 2122 2473 -14 3133 277 84 59 chr13 72180104 72181297 -47563601 - L2 LINE L2 -273 3040 1794 2084 72 10 10 chr13 72181297 72181589 -47563309 - AluSq SINE Alu -21 292 1 3133 277 84 59 chr13 72181589 72181843 -47563055 - L2 LINE L2 -1519 1794 1548 278 167 56 42 chr13 72182103 72182175 -47562723 + LTR66 LTR ERVL 385 457 -153 225 0 0 0 chr13 72182208 72182233 -47562665 + (TA)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr13 72182234 72182258 -47562640 + (TG)n Simple_repeat Simple_repeat 1 24 0 4427 210 72 1 chr13 72182358 72183434 -47561464 - L1 LINE L1 -2786 4779 3624 19497 154 21 11 chr13 72183450 72186703 -47558195 - L1 LINE L1 -4273 3292 7 362 296 66 14 chr13 72186737 72186950 -47557948 - L1M4 LINE L1 -1098 5546 5323 1288 263 55 12 chr13 72186969 72187571 -47557327 - L1M4 LINE L1 -2701 3943 3316 2530 230 25 38 chr13 72187574 72188415 -47556483 - L1M4 LINE L1 -4870 1672 816 265 205 43 0 chr13 72188415 72188532 -47556366 + GA-rich Low_complexity Low_complexity 3 124 0 5074 88 132 0 chr13 72188579 72189309 -47555589 - LTR12 LTR ERV1 0 826 1 340 266 129 27 chr13 72189337 72189553 -47555345 - L1M4 LINE L1 -5710 936 494 905 204 8 71 chr13 72189846 72190086 -47554812 - LTR12 LTR ERV1 -251 463 239 480 293 53 7 chr13 72190753 72190903 -47553995 + MLT1J LTR MaLR 37 193 -318 2089 207 126 24 chr13 72190983 72191641 -47553257 - MER50 LTR ERV1 0 734 10 1983 98 0 14 chr13 72191733 72192028 -47552870 - AluY SINE Alu 0 329 39 437 347 81 14 chr13 72193445 72193667 -47551231 + MLT1J LTR MaLR 115 351 -160 345 47 0 0 chr13 72193774 72193817 -47551081 + (TG)n Simple_repeat Simple_repeat 2 44 0 2287 140 80 8 chr13 72194709 72195108 -47549790 - MSTA LTR MaLR 0 428 1 230 271 21 0 chr13 72196199 72196247 -47548651 + LTR16A LTR ERVL 118 166 -284 988 290 14 32 chr13 72196280 72196567 -47548331 + LTR16A LTR ERVL 169 491 0 487 255 229 40 chr13 72196764 72197136 -47547762 - MLT1H LTR MaLR 0 549 108 201 121 0 0 chr13 72197174 72197207 -47547691 + (TC)n Simple_repeat Simple_repeat 1 33 0 291 260 0 0 chr13 72197281 72197354 -47547544 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 317 320 13 64 chr13 72197390 72197445 -47547453 - MIR SINE MIR -95 167 111 5474 133 73 62 chr13 72197445 72198697 -47546201 - MER11A LTR ERVK 0 1266 1 317 320 13 64 chr13 72198697 72198797 -47546101 - MIR SINE MIR -151 111 20 219 356 67 11 chr13 72198872 72198962 -47545936 - MIR3 SINE MIR -20 188 94 227 208 20 69 chr13 72199749 72199850 -47545048 + CT-rich Low_complexity Low_complexity 2 97 0 181 302 19 0 chr13 72200750 72200803 -47544095 - L2 LINE L2 -1 3271 3218 432 351 84 24 chr13 72200981 72201360 -47543538 + LTR67 LTR ERVL 123 524 -33 204 409 63 13 chr13 72201452 72201611 -47543287 + L2 LINE L2 1033 1199 -2115 200 139 28 0 chr13 72201699 72201735 -47543163 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 1969 299 103 50 chr13 72202145 72202402 -47542496 + HAL1 LINE L1 233 475 -2032 1663 122 91 28 chr13 72202402 72202688 -47542210 + AluSq SINE Alu 1 304 -9 1969 299 103 50 chr13 72202688 72204309 -47540589 + HAL1 LINE L1 475 2211 -296 248 286 171 29 chr13 72204527 72204702 -47540196 - MIR SINE MIR -49 213 14 264 133 0 0 chr13 72205596 72205641 -47539257 - L1MA3 LINE L1 0 6305 6261 * 352 131 16 0 chr13 72205622 72205689 -47539209 + L1MA4 LINE L1 6179 6258 -42 2030 125 16 0 chr13 72208303 72208479 -47536419 - AluSx SINE Alu -3 309 124 198 0 0 0 chr13 72208479 72208501 -47536397 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2030 125 16 0 chr13 72208501 72208628 -47536270 - AluSx SINE Alu -188 124 1 21 0 0 0 chr13 72209580 72209601 -47535297 + AT_rich Low_complexity Low_complexity 1 21 0 27 92 0 0 chr13 72209693 72209769 -47535129 + AT_rich Low_complexity Low_complexity 1 76 0 774 321 102 33 chr13 72209811 72210514 -47534384 + L1ME3 LINE L1 3966 4717 -1429 323 326 22 0 chr13 72210520 72210658 -47534240 + GA-rich Low_complexity Low_complexity 1 141 0 273 29 0 0 chr13 72210805 72210839 -47534059 + (TA)n Simple_repeat Simple_repeat 1 34 0 318 290 124 45 chr13 72211171 72211485 -47533413 + L1ME3 LINE L1 5625 5963 -199 232 265 73 0 chr13 72212879 72212947 -47531951 + MIR SINE MIR 186 258 -4 22 56 0 0 chr13 72213956 72213992 -47530906 + AT_rich Low_complexity Low_complexity 1 36 0 445 204 10 10 chr13 72214007 72214110 -47530788 + MER53 DNA DNA 23 125 -64 411 255 96 38 chr13 72214163 72214320 -47530578 + L2 LINE L2 3146 3311 -2 28 0 0 0 chr13 72214413 72214441 -47530457 + AT_rich Low_complexity Low_complexity 1 28 0 332 310 35 17 chr13 72217582 72217698 -47527200 - MER5A DNA MER1_type -1 188 71 867 230 96 14 chr13 72217711 72218002 -47526896 - L1MD3 LINE L1 -5 7990 7676 234 356 30 0 chr13 72218446 72218547 -47526351 + MIR SINE MIR 45 148 -60 450 145 26 0 chr13 72218550 72218626 -47526272 + 7SLRNA srpRNA srpRNA 232 309 -11 251 355 36 28 chr13 72218644 72218838 -47526060 - MIR3 SINE MIR -12 196 1 1526 216 121 116 chr13 72219485 72220220 -47524678 + LTR41 LTR ERVL 27 765 -8 192 40 0 0 chr13 72221159 72221184 -47523714 + (TG)n Simple_repeat Simple_repeat 2 26 0 306 197 16 0 chr13 72221220 72221281 -47523617 - L1MCa LINE L1 -4362 2064 2003 1865 186 30 24 chr13 72221390 72221762 -47523136 + MLT1A2 LTR MaLR 1 374 0 204 40 0 0 chr13 72221944 72221969 -47522929 + (TG)n Simple_repeat Simple_repeat 1 25 0 842 250 84 45 chr13 72222852 72223421 -47521477 + L2 LINE L2 2739 3313 0 287 361 33 0 chr13 72223754 72223876 -47521022 - L2 LINE L2 0 3313 3188 231 114 0 0 chr13 72225238 72225273 -47519625 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 21 95 0 0 chr13 72225920 72225983 -47518915 + AT_rich Low_complexity Low_complexity 1 63 0 564 277 33 74 chr13 72226630 72226901 -47517997 + MIR SINE MIR 1 260 -2 31 0 0 0 chr13 72227491 72227522 -47517376 + AT_rich Low_complexity Low_complexity 1 31 0 991 149 129 20 chr13 72228937 72229138 -47515760 - MSTA LTR MaLR 0 428 206 217 340 62 0 chr13 72230177 72230274 -47514624 + MER91A DNA MER1_type 18 120 -76 219 378 161 27 chr13 72232234 72232787 -47512111 + L2 LINE L2 192 818 -2496 441 346 120 61 chr13 72232870 72233356 -47511542 + L2 LINE L2 1413 1868 -1446 1681 176 4 0 chr13 72233356 72233663 -47511235 - AluSg SINE Alu 0 309 2 441 346 120 61 chr13 72233663 72234162 -47510736 + L2 LINE L2 1868 2484 -830 2111 95 0 0 chr13 72234162 72234435 -47510463 + AluSg SINE Alu 23 295 -15 441 346 120 61 chr13 72234435 72234635 -47510263 + L2 LINE L2 2484 2671 -643 470 260 41 14 chr13 72234692 72234838 -47510060 - L1ME3A LINE L1 -26 6144 5995 2544 124 3 3 chr13 72235555 72235919 -47508979 - THE1B LTR MaLR 0 364 1 223 341 24 0 chr13 72236032 72236114 -47508784 + MER91A DNA MER1_type 18 101 -95 465 277 86 56 chr13 72236195 72236660 -47508238 + L1ME2 LINE L1 786 1264 -5108 1148 206 68 56 chr13 72236660 72236967 -47507931 - MLT1A1 LTR MaLR -6 359 46 1388 209 10 27 chr13 72236967 72237259 -47507639 + AluJo SINE Alu 3 289 -23 1148 206 68 56 chr13 72237259 72237306 -47507592 - MLT1A1 LTR MaLR -319 46 1 252 331 83 11 chr13 72237313 72237579 -47507319 + L1ME2 LINE L1 1156 1440 -4944 257 143 71 0 chr13 72237587 72237643 -47507255 - L1PB1 LINE L1 -2 6149 6090 230 319 0 0 chr13 72237769 72237838 -47507060 + L1ME2 LINE L1 3739 3807 -2575 2115 292 73 28 chr13 72237875 72239257 -47505641 + L1ME2 LINE L1 3963 5407 -975 1546 177 60 113 chr13 72239251 72239486 -47505412 + L1MB5 LINE L1 5710 5956 -218 * 2306 129 14 0 chr13 72239486 72239842 -47505056 - L1PA13 LINE L1 -2 6161 5801 1546 177 60 113 chr13 72239842 72239964 -47504934 + L1MB5 LINE L1 5956 6037 -137 180 0 0 0 chr13 72239964 72239984 -47504914 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1546 177 60 113 chr13 72239984 72240110 -47504788 + L1MB5 LINE L1 6037 6168 -6 2107 255 21 54 chr13 72240128 72241103 -47503795 + L1ME2 LINE L1 5391 6334 -66 647 262 96 35 chr13 72241116 72241513 -47503385 + L1ME3A LINE L1 5527 5947 -223 26 30 0 0 chr13 72241970 72242003 -47502895 + AT_rich Low_complexity Low_complexity 1 33 0 2593 48 0 0 chr13 72243081 72243392 -47501506 + AluY SINE Alu 1 311 0 225 0 0 0 chr13 72243424 72243449 -47501449 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 27 0 0 0 chr13 72245355 72245382 -47499516 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 72245978 72246001 -47498897 + AT_rich Low_complexity Low_complexity 1 23 0 525 316 18 60 chr13 72250751 72251033 -47493865 + MLT1J LTR MaLR 229 498 -13 322 258 153 24 chr13 72251265 72251389 -47493509 + MIR SINE MIR 119 258 -4 2099 142 0 0 chr13 72253439 72253748 -47491150 + AluSg1 SINE Alu 1 309 0 296 323 54 11 chr13 72255404 72255497 -47489401 + L2 LINE L2 3175 3271 -1 252 100 0 0 chr13 72255545 72255585 -47489313 + (GA)n Simple_repeat Simple_repeat 1 40 0 180 208 21 42 chr13 72257304 72257352 -47487546 - L3b LINE CR1 -110 1473 1427 198 0 0 0 chr13 72258969 72258991 -47485907 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr13 72259034 72259063 -47485835 + AT_rich Low_complexity Low_complexity 1 29 0 2066 136 0 13 chr13 72259615 72259931 -47484967 + AluSx SINE Alu 1 312 0 385 91 0 0 chr13 72260408 72260463 -47484435 + L1PA3 LINE L1 6101 6155 0 1354 182 91 0 chr13 72260638 72260891 -47484007 + Tigger3(Golem) DNA MER2_type 2763 3038 0 213 39 0 0 chr13 72261040 72261066 -47483832 + (T)n Simple_repeat Simple_repeat 1 26 0 1329 223 72 53 chr13 72261066 72261443 -47483455 - MSTD LTR MaLR -12 384 1 471 288 96 88 chr13 72261476 72262031 -47482867 + L1M4 LINE L1 2173 2741 -3405 2439 47 0 3 chr13 72262031 72262328 -47482570 - AluY SINE Alu -15 296 1 471 288 96 88 chr13 72262328 72262819 -47482079 + L1M4 LINE L1 2741 3227 -2919 243 323 16 41 chr13 72263014 72263215 -47481683 - MIR SINE MIR -10 252 3 1331 102 0 0 chr13 72264382 72264558 -47480340 - AluSc SINE Alu -131 178 3 210 297 189 14 chr13 72264835 72264983 -47479915 + MIR SINE MIR 88 261 -1 24 0 0 0 chr13 72265968 72265992 -47478906 + AT_rich Low_complexity Low_complexity 1 24 0 235 335 61 30 chr13 72266324 72266521 -47478377 + L1ME LINE L1 2 204 -5866 778 261 114 68 chr13 72267151 72267870 -47477028 + L1ME LINE L1 421 1140 -4940 1261 128 5 0 chr13 72268226 72268430 -47476468 - L1MA5 LINE L1 -2 6298 6094 227 336 80 7 chr13 72268696 72268833 -47476065 + L2 LINE L2 3042 3188 -125 448 260 89 16 chr13 72269850 72270096 -47474802 + L1ME3A LINE L1 613 876 -5194 23 0 0 0 chr13 72270089 72270112 -47474786 + AT_rich Low_complexity Low_complexity 1 23 0 * 589 179 0 14 chr13 72270275 72270420 -47474478 + CT-rich Low_complexity Low_complexity 2 144 0 2306 271 82 33 chr13 72270946 72272990 -47471908 + L1ME3A LINE L1 3953 6099 -5 499 133 0 0 chr13 72273431 72273514 -47471384 + L1PA11 LINE L1 6090 6172 -2 37 52 0 0 chr13 72273586 72273644 -47471254 + AT_rich Low_complexity Low_complexity 1 58 0 3198 138 6 14 chr13 72274372 72274871 -47470027 - MER1A DNA MER1_type 0 529 35 24 53 0 0 chr13 72275398 72275436 -47469462 + AT_rich Low_complexity Low_complexity 1 38 0 417 280 120 31 chr13 72275901 72276226 -47468672 - L1M4 LINE L1 -2001 4145 3792 1430 191 20 27 chr13 72276426 72276720 -47468178 + AluJo SINE Alu 1 292 -20 23 0 0 0 chr13 72276746 72276769 -47468129 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 72276850 72276871 -47468027 + AT_rich Low_complexity Low_complexity 1 21 0 311 294 135 25 chr13 72277372 72277535 -47467363 + MIR SINE MIR 54 234 -28 216 0 0 0 chr13 72278647 72278671 -47466227 + (T)n Simple_repeat Simple_repeat 1 24 0 2537 20 40 0 chr13 72278936 72279235 -47465663 - AluY SINE Alu 0 311 1 267 285 76 76 chr13 72280387 72280559 -47464339 + MLT1L LTR MaLR 196 367 -248 339 276 52 0 chr13 72280626 72280742 -47464156 + MLT1L LTR MaLR 492 613 -2 2002 104 49 0 chr13 72281030 72281317 -47463581 + AluSp SINE Alu 1 301 -12 674 276 116 37 chr13 72281864 72282217 -47462681 + MLT1J2 LTR MaLR 72 433 -17 318 67 0 0 chr13 72283276 72283321 -47461577 + (GA)n Simple_repeat Simple_repeat 2 46 0 2355 89 0 0 chr13 72284625 72284929 -47459969 + AluY SINE Alu 1 304 -7 24 53 0 0 chr13 72284949 72284987 -47459911 + AT_rich Low_complexity Low_complexity 1 38 0 7770 142 15 2 chr13 72285224 72287532 -47457366 - L1MA3 LINE L1 -2 6303 3966 4403 204 19 9 chr13 72287519 72288493 -47456405 - L1MDa LINE L1 -1910 4630 3647 * 604 275 55 42 chr13 72338516 72338943 -47405955 + L1MDb LINE L1 75 457 -6083 3341 212 44 21 chr13 72339280 72339458 -47405440 + L1MD2 LINE L1 5519 5691 -2304 2243 70 7 10 chr13 72339458 72339759 -47405139 - AluY SINE Alu -11 300 1 3341 212 44 21 chr13 72339759 72340400 -47404498 + L1MD2 LINE L1 5691 7993 -2 1692 186 3 0 chr13 72341123 72341419 -47403479 + AluJb SINE Alu 1 297 -15 2186 105 3 0 chr13 72341884 72342178 -47402720 - AluSg1 SINE Alu -14 295 1 1071 186 45 23 chr13 72342503 72342767 -47402131 - L1MDa LINE L1 -4123 2417 2148 496 274 137 0 chr13 72343212 72343358 -47401540 - MER5B DNA MER1_type 0 178 13 9480 203 32 35 chr13 72347496 72348894 -47396004 - L1PB4 LINE L1 -324 5832 4432 366 23 0 0 chr13 72348894 72348937 -47395961 + (TG)n Simple_repeat Simple_repeat 2 44 0 9480 203 32 35 chr13 72348937 72349678 -47395220 - L1PB4 LINE L1 -1724 4432 3691 2348 140 3 3 chr13 72349678 72350042 -47394856 + THE1B LTR MaLR 1 364 0 9480 203 32 35 chr13 72350042 72350545 -47394353 - L1PB4 LINE L1 -2465 3691 3121 465 163 0 0 chr13 72350545 72350625 -47394273 - AluSc SINE Alu -4 305 226 9480 203 32 35 chr13 72350625 72351043 -47393855 - L1PB4 LINE L1 -3035 3121 2703 3645 222 45 20 chr13 72351168 72352677 -47392221 - L1MA9 LINE L1 -176 6136 4576 965 208 51 144 chr13 72352677 72353086 -47391812 + MLT1A2 LTR MaLR 4 374 0 3645 222 45 20 chr13 72353086 72353333 -47391565 - L1MA9 LINE L1 -1736 4576 4337 240 243 40 99 chr13 72353334 72353533 -47391365 - L1M4c LINE L1 -4046 2166 1985 4918 105 0 1 chr13 72353533 72354259 -47390639 + L1PA8 LINE L1 5464 6188 0 240 243 40 99 chr13 72354259 72354330 -47390568 - L1M4c LINE L1 -4227 1985 1911 23 0 0 0 chr13 72354359 72354382 -47390516 + AT_rich Low_complexity Low_complexity 1 23 0 1374 255 96 24 chr13 72354504 72355315 -47389583 - L1M4c LINE L1 -4731 1410 519 634 342 60 21 chr13 72355607 72356037 -47388861 - L1M4c LINE L1 -5694 447 1 29 28 0 0 chr13 72356414 72356450 -47388448 + AT_rich Low_complexity Low_complexity 1 36 0 2119 104 13 0 chr13 72356720 72357019 -47387879 - AluSp SINE Alu -10 303 1 430 250 50 8 chr13 72357190 72357310 -47387588 - MLT1J1 LTR MaLR -230 216 92 802 275 63 96 chr13 72358569 72358860 -47386038 + L1MEd LINE L1 403 702 -5608 1520 128 12 0 chr13 72358860 72359103 -47385795 - L1MA4A LINE L1 -12 6291 6046 802 275 63 96 chr13 72359103 72359991 -47384907 + L1MEd LINE L1 702 1581 -4729 22 0 0 0 chr13 72360445 72360467 -47384431 + AT_rich Low_complexity Low_complexity 1 22 0 273 57 0 0 chr13 72360626 72360661 -47384237 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1485 190 0 14 chr13 72360664 72360948 -47383950 - AluJb SINE Alu -32 280 1 584 257 53 29 chr13 72360948 72361154 -47383744 + L1MC4 LINE L1 6829 7039 -1003 284 239 0 45 chr13 72361577 72361665 -47383233 + FAM SINE Alu 67 150 -25 1604 251 141 16 chr13 72361670 72362280 -47382618 + L1ME1 LINE L1 5463 6148 -18 23 33 0 0 chr13 72363148 72363178 -47381720 + AT_rich Low_complexity Low_complexity 1 30 0 189 364 111 0 chr13 72363741 72363840 -47381058 - MIR3 SINE MIR -18 190 81 819 254 69 22 chr13 72363923 72364155 -47380743 + MIR SINE MIR 10 252 -10 28 0 0 0 chr13 72364441 72364469 -47380429 + AT_rich Low_complexity Low_complexity 1 28 0 27 73 0 0 chr13 72366132 72366187 -47378711 + AT_rich Low_complexity Low_complexity 1 55 0 246 259 37 56 chr13 72366694 72366802 -47378096 - MIR SINE MIR -1 261 156 1447 123 0 9 chr13 72366802 72367049 -47377849 - AluSq SINE Alu 0 309 65 249 143 0 0 chr13 72367050 72367092 -47377806 + Alu SINE Alu 36 77 -226 244 260 0 0 chr13 72367093 72367143 -47377755 - MIR SINE MIR -101 161 112 23 68 0 0 chr13 72367683 72367727 -47377171 + AT_rich Low_complexity Low_complexity 1 44 0 400 244 62 80 chr13 72367916 72368136 -47376762 + MIR SINE MIR 31 243 -19 1096 251 113 53 chr13 72368369 72368407 -47376491 - MLT2B1 LTR ERVL 0 520 486 378 0 0 0 chr13 72368407 72368449 -47376449 + (TG)n Simple_repeat Simple_repeat 1 42 0 1096 251 113 53 chr13 72368449 72368899 -47375999 - MLT2B1 LTR ERVL -34 486 3 202 137 0 39 chr13 72369193 72369244 -47375654 + (TTCCC)n Simple_repeat Simple_repeat 4 52 0 2335 100 0 0 chr13 72369393 72369702 -47375196 - AluSc SINE Alu 0 309 1 574 349 145 18 chr13 72369809 72370305 -47374593 + L2 LINE L2 2240 2798 -516 327 275 36 22 chr13 72370702 72370840 -47374058 - L1MEc LINE L1 -4305 2091 1952 1857 119 55 81 chr13 72371448 72371833 -47373065 + THE1C LTR MaLR 1 375 0 31 44 0 0 chr13 72372761 72372806 -47372092 + AT_rich Low_complexity Low_complexity 1 45 0 433 295 23 16 chr13 72373946 72374075 -47370823 + MER5A DNA MER1_type 56 185 -4 495 339 110 0 chr13 72374567 72374785 -47370113 + LTR16A LTR ERVL 201 442 -8 199 172 17 17 chr13 72376100 72376158 -47368740 + CT-rich Low_complexity Low_complexity 4 61 0 27 0 0 0 chr13 72376352 72376379 -47368519 + AT_rich Low_complexity Low_complexity 1 27 0 13626 224 27 18 chr13 72376382 72377817 -47367081 - L1MA4A LINE L1 -12 6291 4871 1940 119 55 0 chr13 72377817 72378110 -47366788 + AluSg1 SINE Alu 1 309 0 13626 224 27 18 chr13 72378110 72381263 -47363635 - L1MA4A LINE L1 -1432 4871 1711 934 219 68 39 chr13 72381274 72381313 -47363585 - L1PB4 LINE L1 -3 6153 6117 180 111 0 0 chr13 72381313 72381340 -47363558 + (TA)n Simple_repeat Simple_repeat 2 28 0 934 219 68 39 chr13 72381340 72381579 -47363319 - L1PB4 LINE L1 -39 6117 5867 261 293 47 28 chr13 72381937 72382043 -47362855 + MIR SINE MIR 34 141 -121 792 297 98 35 chr13 72383655 72384032 -47360866 - MLT1J2 LTR MaLR -13 437 37 2220 87 0 3 chr13 72384247 72384546 -47360352 - AluSx SINE Alu -14 298 1 402 257 10 0 chr13 72385567 72385668 -47359230 + MIR SINE MIR 122 223 -39 227 327 10 40 chr13 72387609 72387710 -47357188 + MIR SINE MIR 51 148 -114 334 267 145 15 chr13 72387782 72387913 -47356985 - MIR SINE MIR -111 151 4 404 283 155 45 chr13 72388324 72388614 -47356284 - MLT1L LTR MaLR -127 488 167 22 0 0 0 chr13 72390129 72390151 -47354747 + AT_rich Low_complexity Low_complexity 1 22 0 222 210 17 76 chr13 72390185 72390274 -47354624 + (TA)n Simple_repeat Simple_repeat 2 84 -29 2895 163 70 22 chr13 72390274 72390856 -47354042 + MER4B LTR ERV1 1 610 0 222 210 17 76 chr13 72390856 72390885 -47354013 + (TA)n Simple_repeat Simple_repeat 84 113 0 423 358 7 7 chr13 72391493 72391644 -47353254 + MLT1I LTR MaLR 71 221 -188 493 266 69 69 chr13 72391736 72391909 -47352989 + MER58A DNA MER1_type 9 181 -43 21 0 0 0 chr13 72392426 72392447 -47352451 + AT_rich Low_complexity Low_complexity 1 21 0 1141 112 0 24 chr13 72392620 72392789 -47352109 + AluSg/x SINE Alu 115 279 -33 315 0 0 0 chr13 72392793 72392828 -47352070 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 296 247 13 13 chr13 72393265 72393342 -47351556 + (CA)n Simple_repeat Simple_repeat 2 78 0 293 234 32 117 chr13 72393361 72393515 -47351383 + MER5B DNA MER1_type 1 141 -37 1256 213 84 55 chr13 72394016 72394318 -47350580 + MSTD LTR MaLR 5 322 -74 2012 131 0 0 chr13 72394318 72394609 -47350289 - AluSx SINE Alu -21 291 1 1256 213 84 55 chr13 72394609 72394686 -47350212 + MSTD LTR MaLR 322 395 -1 5937 228 58 58 chr13 72394688 72396040 -47348858 + MSTD-int LTR MaLR 1 1356 -379 1517 215 145 44 chr13 72396040 72396543 -47348355 + MLT2B3 LTR ERVL 1 554 0 5937 228 58 58 chr13 72396543 72396924 -47347974 + MSTD-int LTR MaLR 1356 1735 0 1004 221 148 39 chr13 72396924 72397281 -47347617 + MSTD LTR MaLR 1 396 0 24 0 0 0 chr13 72398556 72398580 -47346318 + AT_rich Low_complexity Low_complexity 1 24 0 265 365 69 16 chr13 72399866 72400055 -47344843 + L2 LINE L2 2616 2814 -500 183 324 108 0 chr13 72400696 72400770 -47344128 - L2 LINE L2 0 3313 3232 385 396 58 56 chr13 72402251 72402663 -47342235 - L2 LINE L2 -1 3271 2859 29 0 0 0 chr13 72402983 72403012 -47341886 + AT_rich Low_complexity Low_complexity 1 29 0 256 313 168 68 chr13 72403012 72403363 -47341535 - L2 LINE L2 -804 2510 2195 2186 110 3 3 chr13 72403363 72403664 -47341234 + AluSq SINE Alu 3 303 -10 256 313 168 68 chr13 72403664 72404132 -47340766 - L2 LINE L2 -1118 2196 1609 21 89 0 0 chr13 72404377 72404433 -47340465 + AT_rich Low_complexity Low_complexity 1 56 0 1740 79 21 4 chr13 72404439 72404679 -47340219 - L1MA3 LINE L1 -364 5941 5698 1698 131 49 80 chr13 72404784 72405134 -47339764 - MER44D DNA MER2_type 0 609 1 250 188 50 0 chr13 72405230 72405310 -47339588 + (TA)n Simple_repeat Simple_repeat 1 84 0 825 127 0 8 chr13 72405498 72405624 -47339274 + FLAM_C SINE Alu 3 127 -16 21 0 0 0 chr13 72406281 72406302 -47338596 + AT_rich Low_complexity Low_complexity 1 21 0 217 366 17 64 chr13 72406928 72407100 -47337798 + L2 LINE L2 2774 2937 -377 401 307 135 0 chr13 72408597 72408820 -47336078 - MIR SINE MIR -6 256 3 21 36 0 0 chr13 72409573 72409601 -47335297 + AT_rich Low_complexity Low_complexity 1 28 0 1940 92 4 8 chr13 72409736 72409997 -47334901 + AluSc SINE Alu 1 260 -49 22 0 0 0 chr13 72410726 72410748 -47334150 + AT_rich Low_complexity Low_complexity 1 22 0 2688 302 79 25 chr13 72411501 72413031 -47331867 - L1MEc LINE L1 -4748 1648 37 348 287 10 72 chr13 72413081 72413276 -47331622 + HAL1 LINE L1 101 283 -2224 198 0 0 0 chr13 72413339 72413361 -47331537 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 43821 40 1 1 chr13 72413818 72419808 -47325090 - L1PA3 LINE L1 -156 5999 14 8953 196 60 12 chr13 72419813 72421984 -47322914 - L1 LINE L1 -835 5311 3036 2984 227 47 4 chr13 72422011 72422751 -47322147 + L1 LINE L1 2236 3007 -3139 300 373 60 8 chr13 72422733 72422867 -47322031 - HAL1 LINE L1 -1838 669 529 * 2050 97 3 7 chr13 72422906 72423196 -47321702 + AluSx SINE Alu 1 289 -23 1935 57 4 4 chr13 72423316 72423564 -47321334 + L1PA8 LINE L1 5910 6157 -15 21 0 0 0 chr13 72423579 72423600 -47321298 + AT_rich Low_complexity Low_complexity 1 21 0 1485 47 5 0 chr13 72423742 72423932 -47320966 + L1PA4 LINE L1 5940 6130 -25 4080 147 85 4 chr13 72423994 72424044 -47320854 + Tigger1 DNA MER2_type 1 46 -2372 222 116 0 0 chr13 72424044 72424087 -47320811 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4080 147 85 4 chr13 72424087 72424762 -47320136 + Tigger1 DNA MER2_type 46 785 -1633 261 299 0 0 chr13 72425258 72425325 -47319573 + L2 LINE L2 3242 3308 -5 1619 236 57 52 chr13 72425327 72425980 -47318918 + L1MC4 LINE L1 7369 8024 -18 1670 176 7 0 chr13 72425980 72426302 -47318596 - AluJb SINE Alu 0 324 1 1491 291 38 26 chr13 72428203 72428777 -47316121 + MLT1E LTR MaLR 1 581 -12 186 103 0 0 chr13 72429121 72429150 -47315748 + (CA)n Simple_repeat Simple_repeat 1 29 0 251 194 111 42 chr13 72429197 72429269 -47315629 + L1MC4 LINE L1 6616 6692 -1350 31 58 0 0 chr13 72430492 72430544 -47314354 + AT_rich Low_complexity Low_complexity 1 52 0 1106 179 191 19 chr13 72430669 72430926 -47313972 + AluJb SINE Alu 2 302 0 782 306 49 36 chr13 72431132 72431518 -47313380 - HAL1 LINE L1 -362 2145 1755 282 231 27 0 chr13 72431548 72431632 -47313266 - L1ME1 LINE L1 -6 6160 6072 2291 214 39 12 chr13 72431742 72432260 -47312638 + MER82 DNA MER2_type 122 653 0 369 285 102 75 chr13 72432403 72433032 -47311866 - HAL1 LINE L1 -1205 1302 657 5207 154 15 21 chr13 72433170 72434149 -47310749 - L1MA8 LINE L1 -2 6289 5317 425 18 36 0 chr13 72434179 72434235 -47310663 - L1PA3 LINE L1 0 6155 6098 529 284 0 8 chr13 72434828 72434962 -47309936 + MER94 DNA DNA 2 134 0 1623 159 78 29 chr13 72436194 72436539 -47308359 - THE1B LTR MaLR 0 364 3 1326 265 78 34 chr13 72437025 72437073 -47307825 + L1ME3A LINE L1 5138 5182 -988 2066 134 3 13 chr13 72437073 72437386 -47307512 + AluSp SINE Alu 1 310 -3 1326 265 78 34 chr13 72437386 72437800 -47307098 + L1ME3A LINE L1 5182 5576 -594 1166 182 42 78 chr13 72437800 72438184 -47306714 + MLT1A2 LTR MaLR 5 374 0 1326 265 78 34 chr13 72438184 72438560 -47306338 + L1ME3A LINE L1 5576 6017 -153 2075 164 97 5 chr13 72438833 72439223 -47305675 + MSTA LTR MaLR 1 426 -2 321 312 75 11 chr13 72439480 72439666 -47305232 - L1M4c LINE L1 -4003 2560 2363 31 88 0 0 chr13 72439669 72439749 -47305149 + AT_rich Low_complexity Low_complexity 1 80 0 634 301 168 31 chr13 72439896 72440531 -47304367 - L1M4c LINE L1 -4571 1992 1118 26 30 0 0 chr13 72441394 72441427 -47303471 + AT_rich Low_complexity Low_complexity 1 33 0 258 332 56 16 chr13 72441455 72441705 -47303193 + MARNA DNA Mariner 313 572 -14 733 269 36 36 chr13 72443078 72443327 -47301571 - MIR SINE MIR -11 251 3 21 89 0 0 chr13 72444513 72444569 -47300329 + AT_rich Low_complexity Low_complexity 1 56 0 23 68 0 0 chr13 72444802 72444846 -47300052 + AT_rich Low_complexity Low_complexity 1 44 0 735 320 20 12 chr13 72446505 72446755 -47298143 - MIR SINE MIR -2 260 9 231 23 93 0 chr13 72446910 72446953 -47297945 + T-rich Low_complexity Low_complexity 2 48 0 356 281 50 14 chr13 72446982 72447121 -47297777 - MLT1L LTR MaLR -32 583 440 893 173 0 13 chr13 72447127 72447283 -47297615 - FRAM SINE Alu -11 165 12 245 317 119 53 chr13 72447345 72447664 -47297234 - MLT1L LTR MaLR -235 380 41 693 294 17 35 chr13 72447702 72447933 -47296965 + MIR SINE MIR 6 232 -30 1824 180 16 0 chr13 72447993 72448315 -47296583 + L1MCa LINE L1 26 352 -6074 181 286 78 84 chr13 72448587 72448741 -47296157 - L2 LINE L2 -47 3266 3114 318 284 14 19 chr13 72449741 72449956 -47294942 + L1M4 LINE L1 3120 3333 -2813 1448 178 48 69 chr13 72450000 72450227 -47294671 - MLT1B LTR MaLR 0 390 173 1949 161 0 3 chr13 72450227 72450575 -47294323 - L1MA5 LINE L1 0 6300 5954 1448 178 48 69 chr13 72450575 72450740 -47294158 - MLT1B LTR MaLR -217 173 6 356 304 0 0 chr13 72450749 72450841 -47294057 - MER5A DNA MER1_type -89 100 9 464 287 95 52 chr13 72450865 72451474 -47293424 + L1M4 LINE L1 3343 3977 -2169 394 232 20 10 chr13 72451478 72451577 -47293321 - MER5A DNA MER1_type -86 103 4 918 163 6 39 chr13 72452213 72452391 -47292507 + MER20 DNA MER1_type 1 172 -47 30 69 0 0 chr13 72455278 72455336 -47289562 + AT_rich Low_complexity Low_complexity 1 58 0 328 238 59 10 chr13 72455919 72456020 -47288878 + L1M4 LINE L1 2829 2934 -3212 1681 258 58 12 chr13 72456021 72456622 -47288276 + L1M4 LINE L1 3726 4354 -1792 30 0 0 0 chr13 72456650 72456680 -47288218 + AT_rich Low_complexity Low_complexity 1 30 0 273 217 17 0 chr13 72456686 72456746 -47288152 + L1M4 LINE L1 4497 4557 -1589 * 1152 259 73 11 chr13 72456744 72457181 -47287717 + L1M4 LINE L1 4823 5286 -860 4352 226 71 68 chr13 72457202 72458858 -47286040 + L1M4 LINE L1 14 1674 -4868 265 170 11 11 chr13 72459517 72459611 -47285287 + (TA)n Simple_repeat Simple_repeat 1 94 0 26 30 0 0 chr13 72459645 72459678 -47285220 + AT_rich Low_complexity Low_complexity 1 33 0 264 57 0 0 chr13 72459679 72459714 -47285184 + MLT2A1 LTR ERVL 394 428 -16 342 0 0 0 chr13 72459716 72459754 -47285144 + (TA)n Simple_repeat Simple_repeat 1 38 0 2879 87 10 20 chr13 72459761 72460165 -47284733 - MLT2A1 LTR ERVL -44 400 1 1645 199 3 10 chr13 72460703 72461015 -47283883 - AluJb SINE Alu -2 310 1 2316 109 11 9 chr13 72461038 72461385 -47283513 - THE1A LTR MaLR -7 348 1 326 115 19 0 chr13 72461385 72461437 -47283461 - THE1A-int LTR MaLR 0 1580 1528 11492 98 7 4 chr13 72461460 72463021 -47281877 - THE1A-int LTR MaLR -14 1566 1 2371 113 8 8 chr13 72463021 72463376 -47281522 - THE1A LTR MaLR 0 355 1 186 143 0 0 chr13 72463416 72463451 -47281447 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr13 72463886 72463910 -47280988 + AT_rich Low_complexity Low_complexity 1 24 0 202 344 116 62 chr13 72464122 72464346 -47280552 + L2 LINE L2 2849 3084 -188 2971 200 26 14 chr13 72464965 72465616 -47279282 + L1MC3 LINE L1 7097 7755 -30 203 0 37 0 chr13 72468808 72468835 -47276063 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr13 72472206 72472227 -47272671 + AT_rich Low_complexity Low_complexity 1 21 0 618 329 13 51 chr13 72472501 72472738 -47272160 - MIR SINE MIR -9 253 26 405 0 0 0 chr13 72472744 72472789 -47272109 + (CA)n Simple_repeat Simple_repeat 2 46 0 205 294 118 24 chr13 72472909 72472994 -47271904 - MIR SINE MIR -97 111 19 245 164 18 36 chr13 72473468 72473523 -47271375 + MIR SINE MIR 91 144 -118 1851 164 0 10 chr13 72476432 72476736 -47268162 + AluJb SINE Alu 1 301 -11 23 68 0 0 chr13 72476894 72476938 -47267960 + AT_rich Low_complexity Low_complexity 1 44 0 45 61 0 10 chr13 72477108 72477139 -47267759 + AT_rich Low_complexity Low_complexity 1 31 -66 2037 29 4 0 chr13 72477139 72477380 -47267518 + L1PA3 LINE L1 5911 6152 -3 45 61 0 10 chr13 72477380 72477446 -47267452 + AT_rich Low_complexity Low_complexity 31 97 0 22 35 0 0 chr13 72478103 72478132 -47266766 + AT_rich Low_complexity Low_complexity 1 29 0 365 188 47 12 chr13 72478160 72478245 -47266653 - MIR SINE MIR -28 234 147 213 302 37 75 chr13 72478928 72479073 -47265825 + MIR SINE MIR 3 140 -68 330 321 137 5 chr13 72479390 72479599 -47265299 + MIR3 SINE MIR 18 256 -6 1936 122 0 61 chr13 72480169 72480496 -47264402 - AluSg SINE Alu -1 309 3 205 293 115 73 chr13 72481130 72481321 -47263577 - L2 LINE L2 -880 2434 2236 2086 116 23 0 chr13 72481350 72481651 -47263247 + AluSg SINE Alu 1 308 -2 27 0 0 0 chr13 72485738 72485765 -47259133 + AT_rich Low_complexity Low_complexity 1 27 0 225 0 0 0 chr13 72486951 72486976 -47257922 + (TA)n Simple_repeat Simple_repeat 2 26 0 2448 57 0 19 chr13 72486976 72487291 -47257607 - AluY SINE Alu -2 309 1 997 269 105 22 chr13 72489560 72490026 -47254872 + L2 LINE L2 2784 3281 -32 244 360 24 23 chr13 72492389 72492535 -47252363 - MIR3 SINE MIR -25 183 29 2165 104 3 10 chr13 72492664 72492972 -47251926 - AluSq SINE Alu -7 306 1 258 183 43 49 chr13 72493208 72493372 -47251526 + (TATAA)n Simple_repeat Simple_repeat 3 165 0 * 266 178 38 38 chr13 72493307 72493464 -47251434 + (TAA)n Simple_repeat Simple_repeat 3 159 0 24 0 0 0 chr13 72493470 72493494 -47251404 + AT_rich Low_complexity Low_complexity 1 24 0 1800 175 51 3 chr13 72493562 72493893 -47251005 + MER7A DNA MER2_type 1 345 -1 1741 161 3 20 chr13 72494045 72494337 -47250561 - AluJo SINE Alu -25 287 1 1666 112 58 27 chr13 72494658 72494952 -47249946 + AluSx SINE Alu 3 305 -7 59 15 0 0 chr13 72495310 72495376 -47249522 + AT_rich Low_complexity Low_complexity 1 66 0 2142 117 7 7 chr13 72495443 72495751 -47249147 - AluSc SINE Alu -1 308 1 41 36 0 0 chr13 72495824 72495879 -47249019 + AT_rich Low_complexity Low_complexity 1 55 0 27 0 0 0 chr13 72496023 72496050 -47248848 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 72496107 72496128 -47248770 + AT_rich Low_complexity Low_complexity 1 21 0 261 261 15 0 chr13 72496436 72496501 -47248397 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 206 183 21 43 chr13 72496542 72496635 -47248263 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 492 62 0 0 chr13 72496668 72496732 -47248166 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1974 118 0 21 chr13 72496732 72497021 -47247877 - AluSq SINE Alu -30 283 1 225 178 0 0 chr13 72497262 72497307 -47247591 + CT-rich Low_complexity Low_complexity 4 48 0 213 94 0 0 chr13 72498655 72498687 -47246211 + (TA)n Simple_repeat Simple_repeat 2 33 0 229 329 12 12 chr13 72500770 72500852 -47244046 + MIR3 SINE MIR 126 207 -1 342 169 4 0 chr13 72501967 72502051 -47242847 - L1MC4 LINE L1 0 8041 7700 939 260 130 30 chr13 72502119 72502519 -47242379 + MLT1D LTR MaLR 64 503 -2 444 246 67 38 chr13 72502524 72502600 -47242298 - L1MC4 LINE L1 -75 7967 7895 365 70 18 0 chr13 72502600 72502657 -47242241 + (TG)n Simple_repeat Simple_repeat 1 58 0 444 246 67 38 chr13 72502657 72502820 -47242078 - L1MC4 LINE L1 -147 7895 7721 1217 250 130 51 chr13 72502938 72503430 -47241468 + MLT1F LTR MaLR 12 542 0 31 0 0 0 chr13 72503608 72503639 -47241259 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr13 72503693 72503723 -47241175 + AT_rich Low_complexity Low_complexity 1 30 0 306 220 100 40 chr13 72504178 72504278 -47240620 + Tigger5 DNA MER2_type 31 136 -2187 * 1227 161 23 5 chr13 72504276 72504493 -47240405 + Tigger5 DNA MER2_type 2103 2323 0 22 56 0 0 chr13 72504590 72504626 -47240272 + AT_rich Low_complexity Low_complexity 1 36 0 35 0 0 0 chr13 72505232 72505267 -47239631 + AT_rich Low_complexity Low_complexity 1 35 0 1881 147 13 0 chr13 72505515 72505821 -47239077 + L1PB4 LINE L1 5476 5785 -371 1772 165 0 16 chr13 72505821 72506124 -47238774 + AluSx SINE Alu 1 298 -14 449 131 12 0 chr13 72506128 72506212 -47238686 + (TA)n Simple_repeat Simple_repeat 1 85 0 1716 195 27 8 chr13 72506217 72506591 -47238307 + L1PB4 LINE L1 5776 6156 0 217 325 94 49 chr13 72506844 72507047 -47237851 + MIR SINE MIR 1 212 -50 22 35 0 0 chr13 72507049 72507078 -47237820 + AT_rich Low_complexity Low_complexity 1 29 0 2065 111 3 3 chr13 72507200 72507498 -47237400 - AluSp SINE Alu -11 302 5 567 53 0 0 chr13 72507730 72507805 -47237093 + (CA)n Simple_repeat Simple_repeat 2 76 0 193 276 17 35 chr13 72508137 72508195 -47236703 + L2 LINE L2 3253 3309 -4 417 129 0 0 chr13 72508959 72509029 -47235869 + (CA)n Simple_repeat Simple_repeat 2 71 0 181 146 49 0 chr13 72510002 72510043 -47234855 + MIR SINE MIR 65 107 -155 253 257 188 20 chr13 72510403 72510504 -47234394 - MIR3 SINE MIR -2 206 89 667 220 0 54 chr13 72510639 72510807 -47234091 + MER4E LTR ERV1 5 163 -616 * 1756 202 5 24 chr13 72510806 72511178 -47233720 + MER4D LTR ERV1 539 903 0 468 211 72 57 chr13 72511350 72511544 -47233354 + L1MC5 LINE L1 7729 7925 -36 788 287 16 20 chr13 72511648 72511895 -47233003 - MIR SINE MIR -3 259 14 255 303 113 7 chr13 72513078 72513220 -47231678 + L2 LINE L2 3149 3305 -8 391 357 28 28 chr13 72513539 72513721 -47231177 + L3 LINE CR1 1396 1577 0 22 56 0 0 chr13 72513933 72513969 -47230929 + AT_rich Low_complexity Low_complexity 1 36 0 29 78 0 0 chr13 72514131 72514195 -47230703 + AT_rich Low_complexity Low_complexity 1 64 0 326 331 47 34 chr13 72514657 72514805 -47230093 + L2 LINE L2 3133 3282 -31 1782 148 21 3 chr13 72514961 72515251 -47229647 - AluSc SINE Alu -14 295 1 192 40 0 0 chr13 72515361 72515386 -47229512 + (TG)n Simple_repeat Simple_repeat 2 26 0 27 0 0 0 chr13 72515772 72515799 -47229099 + AT_rich Low_complexity Low_complexity 1 27 0 25 65 0 0 chr13 72515918 72515964 -47228934 + AT_rich Low_complexity Low_complexity 1 46 0 3684 19 0 0 chr13 72516008 72516434 -47228464 - L1PA2 LINE L1 -2 6153 5728 5040 22 0 0 chr13 72516434 72517030 -47227868 + L1P LINE L1 4649 5244 -902 202 317 146 32 chr13 72517852 72517975 -47226923 - L3 LINE CR1 -1200 377 241 1727 157 13 33 chr13 72518338 72518638 -47226260 - AluJo SINE Alu -18 294 1 22 0 0 0 chr13 72518704 72518726 -47226172 + AT_rich Low_complexity Low_complexity 1 22 0 1865 292 87 15 chr13 72519569 72520375 -47224523 + L2 LINE L2 1584 2447 -867 302 261 47 56 chr13 72520584 72520745 -47224153 - L1M4 LINE L1 -311 5810 5668 302 303 131 8 chr13 72520750 72520872 -47224026 - MIR SINE MIR -73 189 53 26 0 0 0 chr13 72521527 72521553 -47223345 + AT_rich Low_complexity Low_complexity 1 26 0 24 77 0 0 chr13 72522757 72522809 -47222089 + AT_rich Low_complexity Low_complexity 1 52 0 258 179 0 0 chr13 72526760 72526816 -47218082 + (TA)n Simple_repeat Simple_repeat 2 57 0 1597 207 65 24 chr13 72527962 72528334 -47216564 + MLT1B LTR MaLR 4 390 0 1338 236 23 40 chr13 72528659 72529006 -47215892 + MER58B DNA MER1_type 1 341 0 195 262 0 0 chr13 72529483 72529525 -47215373 - MIR SINE MIR -220 42 1 225 0 0 0 chr13 72529754 72529779 -47215119 + (TA)n Simple_repeat Simple_repeat 2 26 0 316 282 95 56 chr13 72529974 72530151 -47214747 + MIR SINE MIR 19 199 -63 778 256 101 27 chr13 72530901 72531120 -47213778 + MIR SINE MIR 6 240 -22 396 156 0 0 chr13 72532369 72532433 -47212465 + FRAM/FAM SINE Alu 2 65 -101 27 29 0 0 chr13 72533640 72533674 -47211224 + AT_rich Low_complexity Low_complexity 1 34 0 31 26 0 0 chr13 72535316 72535354 -47209544 + AT_rich Low_complexity Low_complexity 1 38 0 393 274 41 34 chr13 72536358 72536504 -47208394 + MIR SINE MIR 112 258 -4 306 180 0 0 chr13 72536556 72536617 -47208281 + (TA)n Simple_repeat Simple_repeat 2 62 0 52 41 0 0 chr13 72537012 72537085 -47207813 + AT_rich Low_complexity Low_complexity 1 73 0 2032 47 0 12 chr13 72538291 72538546 -47206352 - AluY SINE Alu -5 306 55 298 294 156 12 chr13 72538587 72538747 -47206151 + MIR SINE MIR 78 260 -2 2072 114 10 3 chr13 72539054 72539352 -47205546 - AluSc SINE Alu -9 300 1 22 0 0 0 chr13 72540641 72540663 -47204235 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 72540713 72540735 -47204163 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 72541110 72541132 -47203766 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 72541744 72541770 -47203128 + AT_rich Low_complexity Low_complexity 1 26 0 225 267 0 0 chr13 72541780 72541840 -47203058 + L1MC4 LINE L1 6644 6703 -1339 22 56 0 0 chr13 72542363 72542399 -47202499 + AT_rich Low_complexity Low_complexity 1 36 0 279 150 0 0 chr13 72543559 72543619 -47201279 + (TC)n Simple_repeat Simple_repeat 2 61 0 264 30 0 0 chr13 72543629 72543662 -47201236 + (CA)n Simple_repeat Simple_repeat 1 33 0 23 68 0 0 chr13 72544198 72544242 -47200656 + AT_rich Low_complexity Low_complexity 1 44 0 35 24 0 0 chr13 72544498 72544540 -47200358 + AT_rich Low_complexity Low_complexity 1 42 0 34 65 0 0 chr13 72544948 72545010 -47199888 + AT_rich Low_complexity Low_complexity 1 62 0 256 333 108 23 chr13 72546512 72546641 -47198257 - L2 LINE L2 0 3272 3133 * 772 289 137 56 chr13 72546628 72547412 -47197486 + L2 LINE L2 2454 3299 -14 223 216 171 90 chr13 72547605 72547716 -47197182 + L2 LINE L2 3179 3298 -15 22 0 0 0 chr13 72549950 72549972 -47194926 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr13 72551796 72551819 -47193079 + (T)n Simple_repeat Simple_repeat 1 23 0 2096 113 7 19 chr13 72551836 72552121 -47192777 + AluSq SINE Alu 1 283 -30 228 100 0 0 chr13 72552121 72552161 -47192737 + (CATA)n Simple_repeat Simple_repeat 2 41 0 2096 113 7 19 chr13 72552161 72552185 -47192713 + AluSq SINE Alu 283 306 -7 186 290 151 0 chr13 72553415 72553508 -47191390 - MIR SINE MIR 0 262 156 208 291 51 38 chr13 72554283 72554362 -47190536 + L2 LINE L2 3193 3272 0 218 336 56 56 chr13 72554550 72554657 -47190241 - L2 LINE L2 -20 3293 3187 200 333 130 0 chr13 72555013 72555136 -47189762 - MIR SINE MIR -122 140 2 548 160 0 9 chr13 72555373 72555479 -47189419 + GA-rich Low_complexity Low_complexity 2 106 0 21 0 0 0 chr13 72557914 72557935 -47186963 + AT_rich Low_complexity Low_complexity 1 21 0 1804 159 3 19 chr13 72558504 72558818 -47186080 + AluSx SINE Alu 4 312 0 22 35 0 0 chr13 72559795 72559824 -47185074 + AT_rich Low_complexity Low_complexity 1 29 0 205 240 140 70 chr13 72560169 72560269 -47184629 - L2 LINE L2 -20 3293 3187 2076 181 45 9 chr13 72561043 72561485 -47183413 - L1MA4 LINE L1 -5 6295 5838 21 36 0 0 chr13 72561541 72561569 -47183329 + AT_rich Low_complexity Low_complexity 1 28 0 564 65 0 0 chr13 72562637 72562714 -47182184 + (TA)n Simple_repeat Simple_repeat 1 77 0 387 41 0 0 chr13 72562713 72562762 -47182136 + (GA)n Simple_repeat Simple_repeat 2 50 0 * 1273 90 6 6 chr13 72562771 72562937 -47181961 + AluSq SINE Alu 3 168 -145 390 192 39 0 chr13 72562958 72563114 -47181784 + (TA)n Simple_repeat Simple_repeat 2 163 0 211 151 38 75 chr13 72563092 72563278 -47181620 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 * 308 233 47 23 chr13 72563291 72563377 -47181521 + L1MC4 LINE L1 6616 6703 -1339 29 90 0 0 chr13 72563417 72563495 -47181403 + AT_rich Low_complexity Low_complexity 1 78 0 269 50 0 25 chr13 72563512 72563552 -47181346 + (TA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr13 72564704 72564727 -47180171 + AT_rich Low_complexity Low_complexity 1 23 0 627 285 25 15 chr13 72564916 72565116 -47179782 + MER105 DNA DNA 2 203 -1 23 0 0 0 chr13 72565128 72565151 -47179747 + AT_rich Low_complexity Low_complexity 1 23 0 2199 114 3 0 chr13 72565205 72565511 -47179387 - AluSg SINE Alu -3 307 1 22 70 0 0 chr13 72566162 72566205 -47178693 + AT_rich Low_complexity Low_complexity 1 43 0 2162 256 63 42 chr13 72567313 72568191 -47176707 + L1MC4 LINE L1 7144 8039 -3 219 160 20 40 chr13 72568191 72568241 -47176657 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 656 264 6 46 chr13 72571028 72571122 -47173776 - MER5B DNA MER1_type -3 175 90 1438 251 61 7 chr13 72571122 72571565 -47173333 + MLT1C LTR MaLR 1 467 0 656 264 6 46 chr13 72571565 72571644 -47173254 - MER5B DNA MER1_type -88 90 9 214 148 37 0 chr13 72572233 72572287 -47172611 + GA-rich Low_complexity Low_complexity 1 56 0 24 53 0 0 chr13 72574586 72574624 -47170274 + AT_rich Low_complexity Low_complexity 1 38 0 1759 140 55 3 chr13 72574784 72575077 -47169821 - AluSx SINE Alu -4 308 1 455 280 8 8 chr13 72575178 72575296 -47169602 - L2 LINE L2 0 3313 3196 841 231 109 73 chr13 72576098 72576539 -47168359 - L1MC5 LINE L1 -582 7379 6923 183 139 0 0 chr13 72577007 72577043 -47167855 + (CA)n Simple_repeat Simple_repeat 1 36 0 220 397 9 9 chr13 72577373 72577489 -47167409 + L3 LINE CR1 230 345 -1232 472 327 139 0 chr13 72577513 72577678 -47167220 - MIR SINE MIR -73 189 2 593 341 196 30 chr13 72577704 72578549 -47166349 + L3 LINE CR1 436 1421 -156 289 200 0 0 chr13 72579151 72579201 -47165697 - MER58 DNA MER1_type 0 2420 2371 * 903 225 44 9 chr13 72579198 72579425 -47165473 - MER58 DNA MER1_type -81 260 26 1997 73 0 0 chr13 72581601 72581849 -47163049 - AluY SINE Alu -7 304 57 246 311 117 14 chr13 72582248 72582395 -47162503 - MIR SINE MIR -64 198 35 21 0 0 0 chr13 72583639 72583660 -47161238 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 72584167 72584196 -47160702 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 72585071 72585092 -47159806 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 72589507 72589544 -47155354 + AT_rich Low_complexity Low_complexity 1 37 0 1700 124 40 0 chr13 72591150 72591424 -47153474 - AluSg SINE Alu -25 285 1 271 301 55 61 chr13 72591768 72591931 -47152967 - L2 LINE L2 -955 2359 2198 183 204 91 0 chr13 72592226 72592270 -47152628 + L2 LINE L2 3263 3310 -3 30 77 0 0 chr13 72592953 72593018 -47151880 + AT_rich Low_complexity Low_complexity 1 65 0 1771 152 29 0 chr13 72593431 72593708 -47151190 + AluJb SINE Alu 1 285 -27 24 67 0 0 chr13 72594525 72594570 -47150328 + AT_rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr13 72594585 72594612 -47150286 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 72594779 72594802 -47150096 + AT_rich Low_complexity Low_complexity 1 23 0 614 283 25 30 chr13 72594936 72595134 -47149764 - L2 LINE L2 -1 3312 3116 410 299 28 42 chr13 72595238 72595382 -47149516 - MIR3 SINE MIR -45 163 22 187 239 0 0 chr13 72600463 72600509 -47144389 + L2 LINE L2 3225 3270 -2 1863 166 7 0 chr13 72600742 72601049 -47143849 - AluSx SINE Alu -3 309 1 235 219 0 0 chr13 72601223 72601264 -47143634 - Charlie1b DNA MER1_type 0 523 483 1159 242 7 34 chr13 72601330 72601627 -47143271 - Charlie1b DNA MER1_type -234 289 1 1549 184 72 14 chr13 72602100 72602422 -47142476 + AluJb SINE Alu 1 339 0 27 0 0 0 chr13 72603016 72603043 -47141855 + AT_rich Low_complexity Low_complexity 1 27 0 994 310 134 30 chr13 72604687 72605458 -47139440 - L2 LINE L2 0 3313 2434 1018 241 108 6 chr13 72605459 72605782 -47139116 - MLT1A1 LTR MaLR 0 365 10 230 333 11 11 chr13 72605787 72605874 -47139024 - L2 LINE L2 -879 2435 2349 278 306 105 48 chr13 72606141 72606265 -47138633 - L2 LINE L2 -1 3271 3141 793 189 0 0 chr13 72607095 72607243 -47137655 + L1MA8 LINE L1 6123 6270 -21 308 272 97 56 chr13 72607459 72607654 -47137244 + MIR SINE MIR 47 249 -13 1187 163 156 4 chr13 72607705 72607962 -47136936 + AluJb SINE Alu 1 296 -6 2211 90 0 0 chr13 72608135 72608423 -47136475 - AluSg SINE Alu -22 288 1 21 0 0 0 chr13 72608980 72609001 -47135897 + AT_rich Low_complexity Low_complexity 1 21 0 300 143 0 0 chr13 72609678 72609734 -47135164 + (CA)n Simple_repeat Simple_repeat 1 56 0 215 225 28 14 chr13 72610351 72610422 -47134476 + (TA)n Simple_repeat Simple_repeat 1 72 0 196 222 0 0 chr13 72610565 72610601 -47134297 + L3 LINE CR1 1379 1414 -163 317 329 48 14 chr13 72610698 72610844 -47134054 - MER5B DNA MER1_type -1 177 27 25 0 0 0 chr13 72611254 72611279 -47133619 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 72612071 72612093 -47132805 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 72613584 72613606 -47131292 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 72615590 72615619 -47129279 + AT_rich Low_complexity Low_complexity 1 29 0 233 318 0 0 chr13 72617778 72617844 -47127054 - MIR SINE MIR -58 150 85 22 0 0 0 chr13 72617930 72617952 -47126946 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 72618947 72618972 -47125926 + AT_rich Low_complexity Low_complexity 1 25 0 2031 102 49 3 chr13 72619412 72619697 -47125201 - AluSq SINE Alu -15 298 1 29 0 0 0 chr13 72619718 72619747 -47125151 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 72622161 72622196 -47122702 + AT_rich Low_complexity Low_complexity 1 35 0 198 333 28 28 chr13 72622273 72622345 -47122553 - MIR SINE MIR -114 94 23 225 308 77 0 chr13 72622476 72622554 -47122344 + MIR SINE MIR 108 191 -71 776 344 50 37 chr13 72623004 72623523 -47121375 - L2 LINE L2 -236 3036 2513 1483 145 107 15 chr13 72623595 72623857 -47121041 - AluJb SINE Alu -25 287 2 195 42 0 0 chr13 72623863 72623887 -47121011 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1884 174 0 0 chr13 72624450 72624744 -47120154 + AluJb SINE Alu 9 302 -10 426 274 52 0 chr13 72625765 72625900 -47118998 - MIR SINE MIR -21 241 100 1500 176 44 4 chr13 72626338 72626611 -47118287 + AluJo SINE Alu 4 287 -25 2202 83 45 0 chr13 72626750 72627038 -47117860 - AluSq SINE Alu -11 302 2 198 103 0 0 chr13 72628969 72628998 -47115900 + (TA)n Simple_repeat Simple_repeat 1 29 0 210 203 62 0 chr13 72630917 72630981 -47113917 + (TA)n Simple_repeat Simple_repeat 1 68 0 25 51 0 0 chr13 72632273 72632312 -47112586 + AT_rich Low_complexity Low_complexity 1 39 0 22 80 0 0 chr13 72633206 72633256 -47111642 + AT_rich Low_complexity Low_complexity 1 50 0 253 351 164 12 chr13 72633538 72633709 -47111189 - MIR3 SINE MIR -7 201 5 219 36 0 0 chr13 72634472 72634500 -47110398 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 184 341 66 0 chr13 72637531 72637622 -47107276 + L2 LINE L2 3115 3211 -61 280 277 161 8 chr13 72637870 72638000 -47106898 - MIR SINE MIR -37 225 76 201 239 0 0 chr13 72640534 72640580 -47104318 + (CAG)n Simple_repeat Simple_repeat 1 46 0 212 339 88 46 chr13 72640840 72641123 -47103775 + L2 LINE L2 2682 2976 -338 289 288 16 4 chr13 72641477 72641602 -47103296 - MIR SINE MIR -75 187 9 1690 165 50 0 chr13 72641687 72641984 -47102914 + AluJb SINE Alu 1 312 0 182 252 61 92 chr13 72642013 72642144 -47102754 - L2 LINE L2 -480 2834 2708 273 298 97 18 chr13 72642146 72642260 -47102638 + MIR3 SINE MIR 83 205 -3 180 0 0 0 chr13 72642287 72642307 -47102591 + (T)n Simple_repeat Simple_repeat 1 20 0 198 71 0 0 chr13 72643472 72643500 -47101398 + (CA)n Simple_repeat Simple_repeat 2 29 0 2137 128 0 0 chr13 72643831 72644143 -47100755 - AluSx SINE Alu 0 312 1 241 274 52 85 chr13 72644231 72644479 -47100419 + L2 LINE L2 2816 3055 -217 340 322 0 71 chr13 72644609 72644792 -47100106 - MER5B DNA MER1_type -2 176 7 196 350 87 10 chr13 72644864 72644967 -47099931 + L2 LINE L2 3185 3295 -18 2164 106 7 10 chr13 72645649 72645950 -47098948 - AluSx SINE Alu -8 304 5 300 27 0 0 chr13 72646416 72646453 -47098445 + (TAA)n Simple_repeat Simple_repeat 1 37 0 295 248 135 23 chr13 72647053 72647186 -47097712 + MIR SINE MIR 95 242 -20 351 352 107 0 chr13 72649824 72649983 -47094915 - MIR3 SINE MIR -3 205 30 228 228 0 0 chr13 72651091 72651148 -47093750 + (TA)n Simple_repeat Simple_repeat 1 57 0 2144 91 3 17 chr13 72652609 72652906 -47091992 + AluSx SINE Alu 1 293 -19 25 0 0 0 chr13 72652918 72652943 -47091955 + AT_rich Low_complexity Low_complexity 1 25 0 2328 82 7 3 chr13 72655926 72656231 -47088667 + AluSq SINE Alu 1 306 -7 347 256 123 54 chr13 72657433 72657636 -47087262 - MLT1L LTR MaLR -384 231 15 24 32 0 0 chr13 72658400 72658431 -47086467 + AT_rich Low_complexity Low_complexity 1 31 0 220 321 59 64 chr13 72658448 72658635 -47086263 + MIR SINE MIR 5 190 -72 1480 179 112 3 chr13 72658904 72659217 -47085681 + MER7A DNA MER2_type 2 346 0 308 304 170 0 chr13 72659266 72659437 -47085461 + MIR SINE MIR 63 262 0 24 67 0 0 chr13 72660318 72660363 -47084535 + AT_rich Low_complexity Low_complexity 1 45 0 957 186 0 6 chr13 72661091 72661268 -47083630 + AluJb SINE Alu 137 312 0 1124 180 0 0 chr13 72661322 72661500 -47083398 + AluJb SINE Alu 74 251 -61 603 112 0 0 chr13 72661520 72661618 -47083280 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 364 211 13 0 chr13 72662934 72663010 -47081888 + MER116 DNA Mariner 4 80 0 379 202 12 0 chr13 72663713 72663797 -47081101 + L1MA9 LINE L1 6081 6165 -147 342 292 49 83 chr13 72663914 72663979 -47080919 - MIR SINE MIR -119 143 77 2009 125 4 0 chr13 72663979 72664391 -47080507 + AluSx SINE Alu 1 413 0 342 292 49 83 chr13 72664391 72664468 -47080430 - MIR SINE MIR -185 77 5 2278 84 3 10 chr13 72665230 72665541 -47079357 - AluSp SINE Alu -4 309 1 24 0 0 0 chr13 72665565 72665589 -47079309 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr13 72666205 72666231 -47078667 + AT_rich Low_complexity Low_complexity 1 26 0 377 82 33 0 chr13 72666676 72666737 -47078161 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 252 286 0 22 chr13 72666804 72666895 -47078003 + L1MC4 LINE L1 6614 6702 -1340 * 257 232 73 24 chr13 72666854 72666936 -47077962 - L1MC4 LINE L1 -1339 6703 6618 277 360 54 21 chr13 72666943 72667129 -47077769 + MIR SINE MIR 61 252 -10 1051 185 4 46 chr13 72667134 72667384 -47077514 + AluJb SINE Alu 1 295 -17 394 73 0 0 chr13 72667408 72667463 -47077435 + Alu SINE Alu 248 302 0 746 153 24 0 chr13 72667650 72667774 -47077124 - FLAM_C SINE Alu -2 131 5 2102 119 3 3 chr13 72668138 72668441 -47076457 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr13 72669987 72670016 -47074882 + AT_rich Low_complexity Low_complexity 1 29 0 185 373 57 38 chr13 72670627 72670785 -47074113 - L2 LINE L2 -842 2472 2312 216 189 0 0 chr13 72671103 72671140 -47073758 + (CATA)n Simple_repeat Simple_repeat 4 40 0 363 325 147 21 chr13 72671787 72672073 -47072825 - L3 LINE CR1 -205 1372 1051 421 275 70 7 chr13 72672410 72672552 -47072346 + MIR SINE MIR 112 262 0 202 330 131 28 chr13 72672549 72672725 -47072173 - L3 LINE CR1 -544 1033 840 * 218 175 0 0 chr13 72673100 72673140 -47071758 + (TG)n Simple_repeat Simple_repeat 2 41 0 328 324 66 0 chr13 72675836 72675972 -47068926 + MIR SINE MIR 91 235 -27 1978 133 23 16 chr13 72676664 72676973 -47067925 + AluSq SINE Alu 3 313 0 29 78 0 0 chr13 72678535 72678599 -47066299 + AT_rich Low_complexity Low_complexity 1 64 0 2210 125 0 0 chr13 72678605 72678917 -47065981 + AluSq SINE Alu 1 312 -1 2008 135 8 1 chr13 72679125 72679480 -47065418 + MER1A DNA MER1_type 1 408 -121 21 0 0 0 chr13 72680277 72680298 -47064600 + AT_rich Low_complexity Low_complexity 1 21 0 194 256 49 61 chr13 72680895 72680977 -47063921 - L3 LINE CR1 -1 1576 1496 718 361 149 9 chr13 72681120 72681658 -47063240 - L3 LINE CR1 -92 1485 873 22 56 0 0 chr13 72681975 72682011 -47062887 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr13 72682787 72682822 -47062076 + AT_rich Low_complexity Low_complexity 1 35 0 969 189 4 38 chr13 72682901 72683139 -47061759 + L1PA2 LINE L1 5923 6152 -3 401 242 0 32 chr13 72683450 72683545 -47061353 - L2 LINE L2 -4 3309 3218 1432 212 124 26 chr13 72683612 72683810 -47061088 + MLT1D LTR MaLR 1 178 -327 396 0 0 0 chr13 72683810 72683854 -47061044 + (CA)n Simple_repeat Simple_repeat 2 45 0 1432 212 124 26 chr13 72683854 72684113 -47060785 + MLT1D LTR MaLR 178 503 -2 21 0 0 0 chr13 72684669 72684690 -47060208 + AT_rich Low_complexity Low_complexity 1 21 0 2133 109 7 0 chr13 72685385 72685679 -47059219 - AluSq SINE Alu -17 296 1 206 32 32 0 chr13 72686664 72686695 -47058203 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2202 111 0 0 chr13 72686879 72687176 -47057722 - AluSc SINE Alu -8 301 5 252 149 0 0 chr13 72687744 72687791 -47057107 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 1571 185 7 13 chr13 72687813 72688121 -47056777 - AluJo SINE Alu -6 306 1 1634 97 155 0 chr13 72688865 72689123 -47055775 + AluSc SINE Alu 1 298 -1 1571 195 0 14 chr13 72689482 72689779 -47055119 + AluJb SINE Alu 1 293 -19 23 0 0 0 chr13 72689779 72689802 -47055096 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 72689814 72689838 -47055060 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 72690196 72690230 -47054668 + AT_rich Low_complexity Low_complexity 1 34 0 340 297 63 1 chr13 72690586 72690738 -47054160 + MIR SINE MIR 38 197 -65 21 0 0 0 chr13 72690762 72690783 -47054115 + AT_rich Low_complexity Low_complexity 1 21 0 570 344 115 55 chr13 72692812 72693682 -47051216 + L2 LINE L2 2054 2975 -339 26 0 0 0 chr13 72693935 72693961 -47050937 + AT_rich Low_complexity Low_complexity 1 26 0 225 354 0 30 chr13 72694922 72695021 -47049877 + MIR SINE MIR 15 110 -152 231 88 0 0 chr13 72696006 72696040 -47048858 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 181 167 37 0 chr13 72696368 72696422 -47048476 + (TA)n Simple_repeat Simple_repeat 1 56 0 231 294 71 33 chr13 72696475 72696686 -47048212 + L1ME4a LINE L1 5797 6015 -106 1753 169 3 3 chr13 72696776 72697066 -47047832 - AluJb SINE Alu -18 294 5 356 241 56 28 chr13 72698093 72698201 -47046697 + MER103 DNA DNA 55 165 -1 23 0 0 0 chr13 72699779 72699802 -47045096 + AT_rich Low_complexity Low_complexity 1 23 0 1835 153 0 0 chr13 72699814 72700088 -47044810 + AluJo SINE Alu 3 276 -36 659 295 14 32 chr13 72700506 72700723 -47044175 - MIR SINE MIR -34 228 16 331 321 18 9 chr13 72700731 72700840 -47044058 - MIR SINE MIR -150 112 3 336 321 175 36 chr13 72700871 72701151 -47043747 - L2 LINE L2 -10 3262 2944 414 39 0 0 chr13 72701173 72701225 -47043673 + (CA)n Simple_repeat Simple_repeat 2 53 0 208 75 25 25 chr13 72701628 72701668 -47043230 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 2412 83 0 10 chr13 72701670 72701983 -47042915 - AluSg SINE Alu 0 310 1 1497 164 48 45 chr13 72702432 72702453 -47042445 + MER44D DNA MER2_type 4 23 -2468 2476 40 0 52 chr13 72702453 72702780 -47042118 - AluY SINE Alu -1 310 1 1497 164 48 45 chr13 72702780 72703093 -47041805 + MER44D DNA MER2_type 23 609 0 225 65 0 0 chr13 72703358 72703389 -47041509 + (CA)n Simple_repeat Simple_repeat 2 32 0 391 318 60 13 chr13 72703987 72704138 -47040760 - MIR SINE MIR -1 261 104 665 199 26 7 chr13 72705231 72705382 -47039516 + L1PA16 LINE L1 6004 6157 -9 469 313 83 23 chr13 72705420 72705637 -47039261 - MIR SINE MIR -26 236 7 2148 119 7 0 chr13 72705713 72706008 -47038890 - AluSq SINE Alu -16 297 1 546 269 276 19 chr13 72706099 72706411 -47038487 + L2 LINE L2 2917 3308 -5 21 0 0 0 chr13 72706824 72706845 -47038053 + AT_rich Low_complexity Low_complexity 1 21 0 622 123 66 0 chr13 72707259 72707365 -47037533 + AluSg/x SINE Alu 187 299 -13 363 284 49 29 chr13 72707366 72707570 -47037328 + L1MC/D LINE L1 5285 5492 -867 2106 104 0 32 chr13 72709438 72709747 -47035151 + AluSg SINE Alu 1 299 -11 198 0 0 0 chr13 72709747 72709769 -47035129 + (GA)n Simple_repeat Simple_repeat 2 23 0 369 187 55 33 chr13 72712424 72712515 -47032383 + MLT1I LTR MaLR 73 165 -244 248 216 56 56 chr13 72712583 72712708 -47032190 + MLT1H LTR MaLR 420 544 -5 22 35 0 0 chr13 72713242 72713271 -47031627 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 72713822 72713844 -47031054 + AT_rich Low_complexity Low_complexity 1 22 0 184 48 48 48 chr13 72714109 72714151 -47030747 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 37 52 0 0 chr13 72715398 72715456 -47029442 + AT_rich Low_complexity Low_complexity 1 58 0 627 226 22 15 chr13 72716422 72716559 -47028339 + MER45A DNA AcHobo 16 153 -25 214 182 0 0 chr13 72717268 72717312 -47027586 + A-rich Low_complexity Low_complexity 1 44 0 2615 39 0 3 chr13 72718005 72718315 -47026583 - AluY SINE Alu -2 309 1 2735 198 18 9 chr13 72718440 72718985 -47025913 + MER44D DNA MER2_type 1 605 0 1090 182 0 44 chr13 72719022 72719225 -47025673 - AluJb SINE Alu -32 280 87 468 35 0 0 chr13 72719615 72719673 -47025225 + (TG)n Simple_repeat Simple_repeat 1 58 0 263 313 30 38 chr13 72719674 72719805 -47025093 - L2 LINE L2 -447 2867 2738 562 305 57 19 chr13 72720405 72720615 -47024283 + L3b LINE CR1 1335 1552 -31 21 0 0 0 chr13 72720799 72720820 -47024078 + AT_rich Low_complexity Low_complexity 1 21 0 186 209 0 0 chr13 72722234 72722277 -47022621 + T-rich Low_complexity Low_complexity 1 43 0 273 57 0 0 chr13 72723492 72723527 -47021371 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 325 301 144 23 chr13 72724179 72724352 -47020546 - MIR SINE MIR -67 195 2 301 300 15 39 chr13 72724337 72724467 -47020431 + MIR SINE MIR 2 128 -134 * 290 357 49 58 chr13 72725085 72725410 -47019488 + L2 LINE L2 2260 2581 -733 210 344 0 21 chr13 72725516 72725609 -47019289 + L2 LINE L2 2776 2866 -448 938 62 70 0 chr13 72725992 72726121 -47018777 - L1PA8 LINE L1 -4 6168 6031 24 32 0 0 chr13 72726362 72726393 -47018505 + AT_rich Low_complexity Low_complexity 1 31 0 360 0 0 0 chr13 72726667 72726707 -47018191 + (CA)n Simple_repeat Simple_repeat 1 40 0 185 342 95 37 chr13 72727189 72727379 -47017519 + L3 LINE CR1 1098 1298 -279 1502 179 44 14 chr13 72727465 72727761 -47017137 + AluJo SINE Alu 1 305 -7 201 336 43 43 chr13 72727773 72727913 -47016985 + L3 LINE CR1 1434 1573 -4 1436 176 8 0 chr13 72728798 72729048 -47015850 + AluJb SINE Alu 54 305 -7 1463 194 7 45 chr13 72732282 72732591 -47012307 + AluJb SINE Alu 1 297 -15 1616 194 0 0 chr13 72732834 72733153 -47011745 - AluSx SINE Alu 0 319 1 28 48 0 0 chr13 72733552 72733594 -47011304 + AT_rich Low_complexity Low_complexity 1 42 0 1009 8 0 25 chr13 72739257 72739379 -47005519 + L1PA3 LINE L1 6037 6155 0 224 351 0 0 chr13 72739738 72739812 -47005086 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 31 0 0 0 chr13 72740118 72740149 -47004749 + AT_rich Low_complexity Low_complexity 1 31 0 244 286 0 88 chr13 72740359 72740450 -47004448 + MIR SINE MIR 51 133 -129 2330 58 27 0 chr13 72740450 72740745 -47004153 - AluY SINE Alu -8 303 1 247 277 179 76 chr13 72741051 72741275 -47003623 - L3 LINE CR1 -595 982 736 2254 106 0 0 chr13 72741465 72741766 -47003132 + AluSq SINE Alu 1 301 -12 938 242 42 5 chr13 72741795 72742010 -47002888 + MER58A DNA MER1_type 1 223 -1 1451 222 17 0 chr13 72742322 72742495 -47002403 - AluJb SINE Alu -10 302 120 204 40 0 0 chr13 72742495 72742520 -47002378 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1451 222 17 0 chr13 72742520 72742643 -47002255 - AluJb SINE Alu -192 120 1 1368 146 5 0 chr13 72743020 72743239 -47001659 + AluSg/x SINE Alu 91 310 -2 227 106 0 21 chr13 72743248 72743295 -47001603 + L1MC4 LINE L1 6658 6703 -1339 284 211 2 57 chr13 72743316 72743776 -47001122 + (CATATA)n Simple_repeat Simple_repeat 1 434 0 191 208 0 58 chr13 72743795 72743968 -47000930 + (CATATA)n Simple_repeat Simple_repeat 1 163 0 404 179 6 58 chr13 72743987 72744160 -47000738 + (CATATA)n Simple_repeat Simple_repeat 1 164 0 427 161 10 137 chr13 72744191 72744396 -47000502 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 224 329 35 29 chr13 72744345 72744515 -47000383 + (TATG)n Simple_repeat Simple_repeat 1 171 0 * 346 227 0 111 chr13 72744451 72744649 -47000249 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 412 236 39 50 chr13 72744638 72744820 -47000078 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chr13 72744980 72745008 -46999890 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 72745642 72745670 -46999228 + AT_rich Low_complexity Low_complexity 1 28 0 205 296 78 113 chr13 72745936 72746051 -46998847 - L2 LINE L2 0 3272 3162 1856 95 106 0 chr13 72746139 72746403 -46998495 + AluSx SINE Alu 9 300 -12 198 331 120 53 chr13 72746995 72747261 -46997637 - L2 LINE L2 -834 2480 2197 2161 116 3 10 chr13 72747614 72747924 -46996974 + AluSg SINE Alu 3 310 0 2178 114 3 10 chr13 72748133 72748440 -46996458 + AluSq SINE Alu 1 305 -8 896 201 101 17 chr13 72748519 72748817 -46996081 - MER33 DNA MER1_type -1 323 1 2532 107 3 3 chr13 72751092 72751447 -46993451 + THE1A LTR MaLR 1 355 0 297 279 163 14 chr13 72752613 72752760 -46992138 - MIR SINE MIR -35 227 59 365 303 227 30 chr13 72753416 72753716 -46991182 + L3 LINE CR1 971 1329 -248 253 254 63 0 chr13 72754174 72754237 -46990661 + MIR SINE MIR 125 191 -71 2101 100 0 0 chr13 72755100 72755400 -46989498 + AluSc SINE Alu 1 300 0 243 0 0 0 chr13 72755799 72755826 -46989072 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chr13 72756009 72756046 -46988852 + AT_rich Low_complexity Low_complexity 1 37 0 205 287 23 16 chr13 72756158 72756287 -46988611 + (TA)n Simple_repeat Simple_repeat 2 131 0 1948 135 0 26 chr13 72756459 72756762 -46988136 + AluSx SINE Alu 1 295 -17 1882 136 7 0 chr13 72758001 72758415 -46986483 - AluSx SINE Alu 0 416 1 282 214 18 0 chr13 72758647 72758703 -46986195 + MIR SINE MIR 206 262 0 226 205 221 49 chr13 72758911 72759033 -46985865 - MIR SINE MIR -67 195 53 266 183 0 33 chr13 72759118 72759178 -46985720 - L2 LINE L2 -1 3312 3255 222 288 24 48 chr13 72759231 72759356 -46985542 + L2 LINE L2 2932 3053 -219 399 98 0 0 chr13 72761585 72761646 -46983252 + (TC)n Simple_repeat Simple_repeat 2 62 0 275 239 0 68 chr13 72763611 72763699 -46981199 - MIR SINE MIR -88 174 93 25 0 0 0 chr13 72765110 72765135 -46979763 + AT_rich Low_complexity Low_complexity 1 25 0 2052 107 0 47 chr13 72765159 72765477 -46979421 - AluY SINE Alu -8 303 1 295 342 32 57 chr13 72765676 72765834 -46979064 - L2 LINE L2 -9 3263 3110 250 327 35 9 chr13 72766513 72766626 -46978272 + MIR SINE MIR 63 178 -84 2237 107 3 0 chr13 72766655 72766955 -46977943 - AluSx SINE Alu -11 301 1 21 57 0 0 chr13 72768594 72768629 -46976269 + AT_rich Low_complexity Low_complexity 1 35 0 434 269 102 24 chr13 72770725 72770892 -46974006 - MER5A DNA MER1_type -6 183 4 22 35 0 0 chr13 72770996 72771025 -46973873 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 72771039 72771068 -46973830 + AT_rich Low_complexity Low_complexity 1 29 0 335 250 17 60 chr13 72771158 72771274 -46973624 - MIR SINE MIR -64 198 88 423 254 104 45 chr13 72771386 72771587 -46973311 - L2 LINE L2 -3 3310 3098 2038 128 0 28 chr13 72771609 72771928 -46972970 + AluSp SINE Alu 1 310 -3 666 330 4 17 chr13 72772249 72772479 -46972419 - MIR SINE MIR -34 228 2 724 222 0 0 chr13 72772668 72772794 -46972104 - FLAM_A SINE Alu -7 126 1 786 223 45 0 chr13 72773387 72773544 -46971354 + FAM SINE Alu 2 165 -10 27 81 0 0 chr13 72773555 72773617 -46971281 + AT_rich Low_complexity Low_complexity 1 62 0 329 388 76 48 chr13 72774265 72774767 -46970131 + L2 LINE L2 2329 2844 -470 294 361 98 16 chr13 72774797 72774991 -46969907 - MIR SINE MIR -31 231 22 2577 40 0 0 chr13 72775017 72775318 -46969580 - AluY SINE Alu -10 301 1 442 280 63 7 chr13 72775434 72775577 -46969321 + MER5B DNA MER1_type 28 178 0 24 100 0 0 chr13 72776290 72776370 -46968528 + AT_rich Low_complexity Low_complexity 1 80 0 28 0 0 0 chr13 72777020 72777048 -46967850 + AT_rich Low_complexity Low_complexity 1 28 0 428 352 0 14 chr13 72778513 72778658 -46966240 - MER5A DNA MER1_type -1 188 46 242 390 26 26 chr13 72778535 72778689 -46966209 + MER5A DNA MER1_type 35 188 -1 * 378 0 0 0 chr13 72780449 72780491 -46964407 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 213 39 0 0 chr13 72780902 72780928 -46963970 + (CA)n Simple_repeat Simple_repeat 2 27 0 257 275 33 11 chr13 72783688 72783779 -46961119 - MIR SINE MIR -73 189 97 1253 156 59 114 chr13 72784135 72784442 -46960456 + AluJo SINE Alu 1 290 -22 389 279 146 18 chr13 72786380 72786545 -46958353 + MIR SINE MIR 4 189 -73 1490 168 98 0 chr13 72786967 72787275 -46957623 + AluJb SINE Alu 1 333 0 223 343 136 14 chr13 72787278 72787418 -46957480 - MIR3 SINE MIR -13 195 39 315 122 0 0 chr13 72788231 72788280 -46956618 + (TA)n Simple_repeat Simple_repeat 1 49 0 288 235 47 0 chr13 72788283 72788368 -46956530 + L1MC4 LINE L1 6614 6702 -1340 264 145 0 0 chr13 72788371 72788456 -46956442 + (TA)n Simple_repeat Simple_repeat 1 85 0 270 365 97 14 chr13 72788613 72788758 -46956140 + MIR SINE MIR 88 244 -18 182 321 107 27 chr13 72789013 72789125 -46955773 + L2 LINE L2 3176 3296 -17 267 54 0 0 chr13 72789128 72789165 -46955733 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 211 290 73 48 chr13 72789280 72789404 -46955494 - L2 LINE L2 -270 3002 2876 682 131 0 0 chr13 72789694 72789793 -46955105 + AluSg/x SINE Alu 196 294 -15 1790 157 4 7 chr13 72789984 72790264 -46954634 + AluJo SINE Alu 1 279 -33 313 280 104 43 chr13 72790322 72790470 -46954428 - MER102b DNA MER1_type -1091 337 171 2375 65 0 0 chr13 72790470 72790810 -46954088 - AluY SINE Alu 0 311 1 313 280 104 43 chr13 72790810 72790872 -46954026 - MER102b DNA MER1_type -1257 171 114 1775 168 10 3 chr13 72791291 72791601 -46953297 + AluSx SINE Alu 1 312 0 23 0 0 0 chr13 72791601 72791624 -46953274 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 72792050 72792073 -46952825 + AT_rich Low_complexity Low_complexity 1 23 0 186 333 92 17 chr13 72792645 72792765 -46952133 - L2 LINE L2 -5 3308 3180 210 37 0 0 chr13 72793097 72793124 -46951774 + (A)n Simple_repeat Simple_repeat 1 27 0 199 269 19 0 chr13 72793393 72793445 -46951453 + L2 LINE L2 3261 3313 0 292 304 64 40 chr13 72797343 72797468 -46947430 + MIR3 SINE MIR 78 205 -3 267 319 0 0 chr13 72797508 72797602 -46947296 + (TA)n Simple_repeat Simple_repeat 1 94 0 209 105 0 26 chr13 72797696 72797734 -46947164 + (CA)n Simple_repeat Simple_repeat 1 37 0 2013 112 0 33 chr13 72800513 72800816 -46944082 - AluSx SINE Alu -19 293 1 288 0 0 0 chr13 72801472 72801504 -46943394 + (CA)n Simple_repeat Simple_repeat 2 33 0 1836 153 30 0 chr13 72802664 72802959 -46941939 - AluJo SINE Alu -8 304 1 394 267 34 42 chr13 72802962 72803088 -46941810 - MIR SINE MIR -57 151 29 305 240 148 47 chr13 72803159 72803308 -46941590 - MIR SINE MIR -87 121 12 2175 105 3 0 chr13 72803570 72803866 -46941032 - AluSx SINE Alu -11 301 5 302 343 52 35 chr13 72804849 72805021 -46939877 + MIR SINE MIR 69 243 -19 381 43 0 0 chr13 72807449 72807496 -46937402 + (TA)n Simple_repeat Simple_repeat 1 47 0 594 322 12 0 chr13 72809167 72809338 -46935560 + MIR3 SINE MIR 31 203 -5 24 0 0 0 chr13 72809953 72809977 -46934921 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr13 72811710 72811749 -46933149 + AT_rich Low_complexity Low_complexity 1 39 0 1564 203 21 0 chr13 72813169 72813455 -46931443 + AluJo SINE Alu 1 292 -20 298 185 0 0 chr13 72814092 72814103 -46930795 + MER3 DNA MER1_type 37 47 -162 746 233 94 0 chr13 72814103 72814283 -46930615 - MER3 DNA MER1_type 0 209 13 2093 111 3 14 chr13 72814942 72815239 -46929659 - AluSx SINE Alu -18 294 1 189 0 0 0 chr13 72816552 72816573 -46928325 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr13 72816864 72816887 -46928011 + AT_rich Low_complexity Low_complexity 1 23 0 1622 161 52 0 chr13 72818336 72818603 -46926295 - AluJb SINE Alu -31 281 1 242 308 255 5 chr13 72819261 72819469 -46925429 - MIR SINE MIR 0 262 3 30 45 0 0 chr13 72820426 72820470 -46924428 + AT_rich Low_complexity Low_complexity 1 44 0 294 191 245 0 chr13 72820866 72820960 -46923938 + MIR SINE MIR 89 205 -57 202 154 26 0 chr13 72822235 72822274 -46922624 - L2 LINE L2 -1 3312 3273 363 301 122 19 chr13 72822348 72822561 -46922337 - MIR SINE MIR -6 256 22 257 349 54 8 chr13 72822924 72823053 -46921845 - MIR3 SINE MIR -7 201 67 2547 7 0 0 chr13 72824936 72825245 -46919653 + AluY SINE Alu 1 309 0 1134 89 56 28 chr13 72825511 72825691 -46919207 + L1P4 LINE L1 5607 5791 -377 231 231 0 0 chr13 72825684 72825736 -46919162 + L1MC4 LINE L1 6652 6703 -1339 * 272 311 0 0 chr13 72825728 72825818 -46919080 - L1MC4 LINE L1 -1339 6703 6614 2519 104 8 10 chr13 72825833 72826216 -46918682 + L1PA13 LINE L1 5782 6163 0 350 309 48 8 chr13 72826295 72826421 -46918477 - MIR3 SINE MIR -8 200 70 290 298 104 61 chr13 72826564 72826643 -46918255 - L2 LINE L2 -16 3297 3223 1058 204 12 70 chr13 72826643 72826935 -46917963 + MER33 DNA MER1_type 1 272 -2313 2203 110 7 0 chr13 72826935 72827245 -46917653 - AluSx SINE Alu 0 312 1 1058 204 12 70 chr13 72827245 72827295 -46917603 + MER33 DNA MER1_type 272 323 -1 290 298 104 61 chr13 72827295 72827667 -46917231 - L2 LINE L2 -90 3223 2734 254 282 60 43 chr13 72827667 72827784 -46917114 + L2 LINE L2 2557 2675 -639 848 310 35 20 chr13 72828218 72828563 -46916335 - LTR33 LTR ERVL -169 352 3 266 355 71 14 chr13 72828871 72829082 -46915816 - L2 LINE L2 -50 3263 3041 827 136 0 23 chr13 72829121 72829253 -46915645 + FLAM_C SINE Alu 5 133 0 26 0 0 0 chr13 72829747 72829773 -46915125 + AT_rich Low_complexity Low_complexity 1 26 0 299 196 76 22 chr13 72830468 72830560 -46914338 + MIR3 SINE MIR 106 202 -6 45 55 0 0 chr13 72830560 72830633 -46914265 + AT_rich Low_complexity Low_complexity 1 73 0 2065 104 7 0 chr13 72830934 72831214 -46913684 + AluSc SINE Alu 22 303 -6 31 26 0 0 chr13 72832230 72832268 -46912630 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr13 72833203 72833236 -46911662 + AT_rich Low_complexity Low_complexity 1 33 0 205 135 81 0 chr13 72833257 72833294 -46911604 + L2 LINE L2 1773 1812 -1502 22 56 0 0 chr13 72833355 72833391 -46911507 + AT_rich Low_complexity Low_complexity 1 36 0 188 261 0 0 chr13 72833631 72833677 -46911221 + L2 LINE L2 3267 3312 -1 2120 209 34 2 chr13 72834430 72834928 -46909970 - L1MB8 LINE L1 -2 6176 5663 23 33 0 0 chr13 72835758 72835788 -46909110 + AT_rich Low_complexity Low_complexity 1 30 0 225 325 106 0 chr13 72835833 72835984 -46908914 + L2 LINE L2 3140 3306 -7 240 316 59 29 chr13 72837435 72837571 -46907327 + MIR3 SINE MIR 16 155 -53 216 0 0 0 chr13 72842106 72842130 -46902768 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 527 282 0 0 chr13 72844751 72844875 -46900023 - MER94 DNA DNA -10 124 1 506 265 138 11 chr13 72845424 72845613 -46899285 - MIR SINE MIR -2 260 48 543 283 112 62 chr13 72845809 72846113 -46898785 + L2 LINE L2 2994 3312 -1 222 37 0 0 chr13 72846134 72846161 -46898737 + (CA)n Simple_repeat Simple_repeat 2 28 0 3197 5 37 5 chr13 72846785 72847160 -46897738 + L1PA2 LINE L1 5629 6015 -140 2354 92 0 0 chr13 72848465 72848768 -46896130 + AluY SINE Alu 8 310 -1 277 290 215 9 chr13 72848783 72848997 -46895901 + L2 LINE L2 2230 2487 -827 2124 137 0 3 chr13 72849072 72849378 -46895520 - AluSx SINE Alu -5 307 3 207 280 0 140 chr13 72849442 72849592 -46895306 + L2 LINE L2 2691 2819 -495 193 348 14 15 chr13 72851110 72851174 -46893724 - MIR SINE MIR -59 149 85 548 278 205 0 chr13 72851174 72851379 -46893519 + MIR SINE MIR 3 249 -13 1594 188 7 11 chr13 72851427 72851709 -46893189 + AluJb SINE Alu 1 281 -31 1072 90 78 0 chr13 72852221 72852388 -46892510 - L1MA1 LINE L1 0 6302 6123 1604 200 4 0 chr13 72852413 72852693 -46892205 - AluJb SINE Alu -27 285 5 2944 119 31 4 chr13 72853893 72854373 -46890525 + L1MA5A LINE L1 5795 6287 -10 1584 125 49 4 chr13 72855491 72855755 -46889143 + AluSx SINE Alu 1 276 -36 189 107 0 0 chr13 72855759 72855787 -46889111 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 399 369 29 15 chr13 72855841 72856047 -46888851 + MIR SINE MIR 36 244 -18 1403 134 116 51 chr13 72857681 72857957 -46886941 - AluJb SINE Alu -18 294 1 194 215 148 81 chr13 72865974 72866123 -46878775 - L3 LINE CR1 -97 1480 1322 24 77 0 0 chr13 72866241 72866293 -46878605 + AT_rich Low_complexity Low_complexity 1 52 0 1196 84 153 0 chr13 72867726 72867916 -46876982 - L1MA8 LINE L1 -199 6092 5874 420 117 0 0 chr13 72868001 72868078 -46876820 + (TC)n Simple_repeat Simple_repeat 1 77 0 299 248 0 40 chr13 72869289 72869390 -46875508 + (CATA)n Simple_repeat Simple_repeat 3 99 0 189 0 0 0 chr13 72871040 72871061 -46873837 + (A)n Simple_repeat Simple_repeat 1 21 0 204 241 0 127 chr13 72871844 72871923 -46872975 + MIR SINE MIR 64 132 -76 22 35 0 0 chr13 72872324 72872353 -46872545 + AT_rich Low_complexity Low_complexity 1 29 0 339 25 0 0 chr13 72873308 72873348 -46871550 + (CA)n Simple_repeat Simple_repeat 1 40 0 240 233 0 70 chr13 72874072 72874158 -46870740 + GA-rich Low_complexity Low_complexity 2 81 0 210 264 0 0 chr13 72874301 72874354 -46870544 + (CA)n Simple_repeat Simple_repeat 1 53 0 317 320 133 67 chr13 72874551 72875041 -46869857 - L1M2 LINE L1 -5742 1107 586 600 73 0 0 chr13 72875413 72875495 -46869403 + (CTG)n Simple_repeat Simple_repeat 1 82 0 724 165 0 18 chr13 72875520 72875690 -46869208 + (CCG)n Simple_repeat Simple_repeat 1 167 0 240 348 0 18 chr13 72875969 72876081 -46868817 + GA-rich Low_complexity Low_complexity 1 110 0 217 244 42 42 chr13 72876532 72876651 -46868247 + GA-rich Low_complexity Low_complexity 2 120 0 21 0 0 0 chr13 72876948 72876969 -46867929 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr13 72877534 72877557 -46867341 + (TTTTC)n Simple_repeat Simple_repeat 5 27 0 21 0 0 0 chr13 72877775 72877796 -46867102 + AT_rich Low_complexity Low_complexity 1 21 0 228 200 0 0 chr13 72878792 72878842 -46866056 + T-rich Low_complexity Low_complexity 1 50 0 266 321 0 0 chr13 72879291 72879372 -46865526 + C-rich Low_complexity Low_complexity 1 81 0 22 0 0 0 chr13 72880275 72880297 -46864601 + AT_rich Low_complexity Low_complexity 1 22 0 197 133 0 0 chr13 72883381 72883411 -46861487 + L3b LINE CR1 1436 1465 -118 182 274 48 16 chr13 72885371 72885433 -46859465 - L2 LINE L2 -38 3234 3171 22 0 0 0 chr13 72887133 72887155 -46857743 + AT_rich Low_complexity Low_complexity 1 22 0 454 124 51 4 chr13 72887155 72887397 -46857501 + (TA)n Simple_repeat Simple_repeat 1 253 0 22 56 0 0 chr13 72887809 72887845 -46857053 + AT_rich Low_complexity Low_complexity 1 36 0 213 218 0 18 chr13 72887963 72888018 -46856880 + (CA)n Simple_repeat Simple_repeat 1 54 0 195 42 0 0 chr13 72888660 72888684 -46856214 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 334 243 51 90 chr13 72889707 72889884 -46855014 - MIR SINE MIR -3 259 90 579 250 158 22 chr13 72890467 72890695 -46854203 + MIR SINE MIR 2 260 -2 1898 169 49 19 chr13 72891493 72891860 -46853038 - MLT1B LTR MaLR -6 384 7 233 280 0 0 chr13 72891905 72891955 -46852943 + L2 LINE L2 2709 2758 -556 2305 90 0 7 chr13 72891997 72892297 -46852601 - AluSg SINE Alu -12 298 1 2708 78 35 0 chr13 72892596 72892968 -46851930 + L1PA13 LINE L1 5778 6162 -1 26 74 0 0 chr13 72893197 72893251 -46851647 + AT_rich Low_complexity Low_complexity 1 54 0 314 194 28 125 chr13 72893587 72893731 -46851167 - MLT1H LTR MaLR 0 549 420 583 264 145 32 chr13 72893809 72893861 -46851037 - L1ME LINE L1 -457 5705 5660 1158 198 54 92 chr13 72893861 72894250 -46850648 + MLT1A2 LTR MaLR 1 374 0 583 264 145 32 chr13 72894250 72894817 -46850081 - L1ME LINE L1 -502 5660 5006 829 136 8 0 chr13 72894892 72895017 -46849881 + MER20 DNA MER1_type 93 218 -1 440 300 52 35 chr13 72895058 72895425 -46849473 - L1ME LINE L1 -3433 2713 2341 25 65 0 0 chr13 72895446 72895492 -46849406 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr13 72895544 72895572 -46849326 + AT_rich Low_complexity Low_complexity 1 28 0 1625 163 7 14 chr13 72895572 72895860 -46849038 - AluJb SINE Alu -26 286 1 1201 227 132 10 chr13 72896024 72896433 -46848465 - L1MC4 LINE L1 -813 7229 6771 709 229 73 73 chr13 72896561 72896741 -46848157 - L1MC4 LINE L1 -1261 6781 6599 188 67 33 0 chr13 72896741 72896771 -46848127 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 709 229 73 73 chr13 72896771 72896905 -46847993 - L1MC4 LINE L1 -1442 6600 6467 753 152 0 0 chr13 72897213 72897338 -46847560 - AluSg/x SINE Alu -14 298 174 436 145 14 0 chr13 72897338 72897407 -46847491 - AluS SINE Alu -232 70 1 21 36 0 0 chr13 72897623 72897651 -46847247 + AT_rich Low_complexity Low_complexity 1 28 0 331 304 110 58 chr13 72897823 72898205 -46846693 + MLT1K LTR MaLR 181 582 -6 1319 177 31 7 chr13 72898770 72899064 -46845834 + L1MB4 LINE L1 5879 6179 -1 560 140 120 0 chr13 72900508 72900608 -46844290 + FLAM_A SINE Alu 25 136 -6 285 279 87 19 chr13 72900772 72900876 -46844022 - MIR SINE MIR -36 226 116 198 0 0 0 chr13 72901431 72901453 -46843445 + (CCA)n Simple_repeat Simple_repeat 1 22 0 7405 32 1 7 chr13 72902525 72903622 -46841276 + L1PA4 LINE L1 5063 6154 -1 2079 120 0 3 chr13 72904408 72904699 -46840199 - AluSx SINE Alu -22 290 1 232 351 58 6 chr13 72905316 72905487 -46839411 + L2 LINE L2 3132 3311 -2 1975 117 25 52 chr13 72905487 72905854 -46839044 + L1MA8 LINE L1 5888 6244 -47 * 10490 174 19 5 chr13 72905852 72907819 -46837079 + L1MA4A LINE L1 3308 5321 -982 225 0 0 0 chr13 72907819 72907844 -46837054 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 10490 174 19 5 chr13 72907844 72908826 -46836072 + L1MA4A LINE L1 5321 6288 -15 572 188 0 26 chr13 72908826 72908943 -46835955 - Tigger7 DNA MER2_type -585 120 7 21 0 0 0 chr13 72909030 72909051 -46835847 + AT_rich Low_complexity Low_complexity 1 21 0 242 146 18 0 chr13 72909053 72909108 -46835790 + L1MA8 LINE L1 6232 6287 -4 321 286 32 56 chr13 72909163 72909289 -46835609 - L2 LINE L2 0 3313 3191 546 254 35 23 chr13 72909714 72909887 -46835011 - L1ME3A LINE L1 -8 6162 5988 3267 114 10 2 chr13 72909975 72910467 -46834431 - L1PB1 LINE L1 -1 6150 5655 187 293 222 42 chr13 72910921 72911088 -46833810 + MIR SINE MIR 30 226 -36 237 108 0 0 chr13 72911697 72911734 -46833164 + (CTG)n Simple_repeat Simple_repeat 1 37 0 1603 168 3 21 chr13 72912350 72912636 -46832262 + AluJo SINE Alu 9 289 -23 1565 160 74 12 chr13 72912677 72913002 -46831896 - L1MC1 LINE L1 0 6333 5989 337 236 22 0 chr13 72913079 72913168 -46831730 - MER112 DNA MER1_type -169 91 1 24 77 0 0 chr13 72913891 72913943 -46830955 + AT_rich Low_complexity Low_complexity 1 52 0 313 328 90 51 chr13 72914100 72914277 -46830621 + MIR SINE MIR 79 262 0 967 198 5 50 chr13 72914292 72914494 -46830404 - AluJo SINE Alu -97 215 23 1205 183 104 10 chr13 72914865 72915154 -46829744 - L1MC2 LINE L1 -6 6338 6023 351 0 0 0 chr13 72915185 72915224 -46829674 + (TC)n Simple_repeat Simple_repeat 2 40 0 289 317 168 62 chr13 72915288 72915969 -46828929 - L2 LINE L2 -2 3270 2524 240 289 44 30 chr13 72916067 72916202 -46828696 + L1MC4a LINE L1 5814 5950 -1858 1293 226 71 12 chr13 72916223 72916546 -46828352 - MER2 DNA MER2_type -2 342 1 2546 61 0 0 chr13 72916724 72917035 -46827863 + AluY SINE Alu 1 311 0 246 222 12 49 chr13 72917301 72917382 -46827516 + LTR33A LTR ERVL 446 523 0 1528 332 106 28 chr13 72917595 72918771 -46826127 + L2 LINE L2 1642 2971 -342 2063 120 0 19 chr13 72918771 72919088 -46825810 - AluSx SINE Alu -1 311 1 1528 332 106 28 chr13 72919088 72919461 -46825437 + L2 LINE L2 2971 3313 0 313 314 39 10 chr13 72919840 72919942 -46824956 + MIR3 SINE MIR 78 182 -26 220 247 86 12 chr13 72920227 72920308 -46824590 - MIR SINE MIR -62 200 114 213 215 13 51 chr13 72920459 72920538 -46824360 + (TG)n Simple_repeat Simple_repeat 1 76 0 429 331 137 53 chr13 72920650 72921373 -46823525 + L2 LINE L2 2033 2816 -498 246 32 0 0 chr13 72921439 72921470 -46823428 + (TG)n Simple_repeat Simple_repeat 1 31 0 667 359 38 23 chr13 72921472 72921815 -46823083 + L2 LINE L2 2923 3270 -2 751 308 86 24 chr13 72922318 72922692 -46822206 + MER115 DNA AcHobo 297 693 0 234 91 0 0 chr13 72922761 72922794 -46822104 + (T)n Simple_repeat Simple_repeat 1 33 0 607 273 23 34 chr13 72923762 72923938 -46820960 - MIR SINE MIR -55 207 34 502 124 14 38 chr13 72925488 72925706 -46819192 + (TA)n Simple_repeat Simple_repeat 1 212 0 2316 94 0 0 chr13 72925878 72926177 -46818721 - AluSc SINE Alu -10 299 1 370 309 24 32 chr13 72926347 72926473 -46818425 - L2 LINE L2 0 3313 3189 474 315 132 37 chr13 72926475 72926878 -46818020 + L2 LINE L2 2498 2938 -376 223 120 120 40 chr13 72927149 72927199 -46817699 + MIR SINE MIR 209 262 0 21 57 0 0 chr13 72929300 72929335 -46815563 + AT_rich Low_complexity Low_complexity 1 35 0 306 0 0 0 chr13 72929671 72929705 -46815193 + (TG)n Simple_repeat Simple_repeat 2 35 0 591 239 188 10 chr13 72929840 72930037 -46814861 + MIR SINE MIR 6 237 -25 192 77 0 0 chr13 72930408 72930434 -46814464 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 761 287 80 25 chr13 72930651 72930965 -46813933 + MER102b DNA MER1_type 1 331 -10 614 239 78 0 chr13 72931117 72931284 -46813614 - MER20 DNA MER1_type 0 219 40 30 89 0 0 chr13 72932061 72932140 -46812758 + AT_rich Low_complexity Low_complexity 1 79 0 1906 154 6 31 chr13 72933752 72934070 -46810828 + AluJb SINE Alu 1 310 -2 21 36 0 0 chr13 72935197 72935225 -46809673 + AT_rich Low_complexity Low_complexity 1 28 0 245 258 0 133 chr13 72935429 72935549 -46809349 + L2 LINE L2 3210 3313 0 21 0 0 0 chr13 72936056 72936077 -46808821 + AT_rich Low_complexity Low_complexity 1 21 0 2071 108 0 14 chr13 72936077 72936363 -46808535 + AluSq SINE Alu 1 282 -31 235 64 21 21 chr13 72936366 72936413 -46808485 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 641 313 82 21 chr13 72936518 72936799 -46808099 - LTR33A LTR ERVL -219 304 7 268 184 40 13 chr13 72938550 72938626 -46806272 - L1MA7 LINE L1 0 6291 6214 473 167 0 0 chr13 72938627 72938705 -46806193 - MADE1 DNA Mariner 0 80 3 1590 141 6 29 chr13 72938723 72939065 -46805833 - MER4A LTR ERV1 -17 647 261 521 104 42 21 chr13 72939065 72939161 -46805737 - MER4A LTR ERV1 -566 98 1 2463 194 35 2 chr13 72939168 72939679 -46805219 - L1MA7 LINE L1 -77 6214 5687 697 316 52 0 chr13 72939871 72940102 -46804796 - MIR SINE MIR -14 248 6 253 376 64 24 chr13 72940163 72940288 -46804610 - L2 LINE L2 -2 3270 3141 204 404 61 19 chr13 72940468 72940552 -46804346 - L2 LINE L2 -340 2974 2895 1946 132 24 37 chr13 72940552 72940932 -46803966 + THE1C LTR MaLR 1 375 0 204 404 61 19 chr13 72940932 72941208 -46803690 - L2 LINE L2 -419 2895 2599 208 282 70 35 chr13 72941413 72941555 -46803343 - L2 LINE L2 -804 2510 2364 790 162 7 0 chr13 72941581 72941723 -46803175 + MSTB2 LTR MaLR 5 147 -310 2783 16 0 12 chr13 72941747 72942066 -46802832 + AluYb8 SINE Alu 1 315 -3 497 323 38 68 chr13 72942145 72942572 -46802326 - L2 LINE L2 -1215 2099 1686 241 152 24 0 chr13 72942852 72942904 -46801994 + Alu SINE Alu 85 131 -2 853 303 53 61 chr13 72942919 72943613 -46801285 + L2 LINE L2 2539 3232 -81 5178 185 32 6 chr13 72944539 72946398 -46798500 + L1PA16 LINE L1 4263 6166 0 192 305 74 79 chr13 72946399 72946602 -46798296 - L2 LINE L2 -660 2654 2453 2104 140 0 12 chr13 72947075 72947417 -46797481 + MER44D DNA MER2_type 1 608 -1 1444 108 22 0 chr13 72947548 72947771 -46797127 + L1PA10 LINE L1 5941 6168 0 186 43 0 0 chr13 72948784 72948807 -46796091 + (A)n Simple_repeat Simple_repeat 1 23 0 408 355 94 25 chr13 72949169 72949532 -46795366 + L2 LINE L2 2225 2612 -702 190 315 111 74 chr13 72949877 72950147 -46794751 + L2 LINE L2 2616 2895 -419 1188 261 98 29 chr13 72950310 72950727 -46794171 + MLT1C LTR MaLR 15 460 -7 379 200 0 13 chr13 72950768 72950843 -46794055 + L2 LINE L2 3236 3309 -4 413 241 0 9 chr13 72952014 72952122 -46792776 + L1 LINE L1 4124 4230 -1916 230 304 0 0 chr13 72952227 72952296 -46792602 + MLT1C-int LTR MaLR 54 122 -1613 509 338 17 4 chr13 72952359 72952593 -46792305 + MLT1C-int LTR MaLR 308 544 -827 1514 183 4 11 chr13 72953022 72953295 -46791603 + AluJo SINE Alu 3 273 -39 2171 127 121 11 chr13 72953296 72953675 -46791223 + MSTA LTR MaLR 1 421 -7 258 233 122 22 chr13 72953694 72953784 -46791114 + MLT1C-int LTR MaLR 792 890 -481 1367 294 117 14 chr13 72954283 72954803 -46790095 + MLT1G1 LTR MaLR 9 582 -13 25 31 0 0 chr13 72955205 72955237 -46789661 + AT_rich Low_complexity Low_complexity 1 32 0 22 99 0 0 chr13 72956198 72956269 -46788629 + AT_rich Low_complexity Low_complexity 1 71 0 303 364 45 18 chr13 72957169 72957389 -46787509 - L2 LINE L2 -2833 481 256 362 326 179 42 chr13 72957691 72957998 -46786900 - L3 LINE CR1 -151 1426 1078 239 279 67 87 chr13 72957961 72958169 -46786729 - L2 LINE L2 -1423 1891 1688 * 208 308 13 0 chr13 72958471 72958549 -46786349 - MIR SINE MIR -6 256 178 * 581 332 63 13 chr13 72958548 72958786 -46786112 + MIR SINE MIR 13 262 0 256 270 67 43 chr13 72960213 72960362 -46784536 + MIR SINE MIR 34 184 -66 279 0 0 0 chr13 72961027 72961058 -46783840 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr13 72962220 72962243 -46782655 + AT_rich Low_complexity Low_complexity 1 23 0 1425 252 166 30 chr13 72962416 72963115 -46781783 - LTR50 LTR ERVL 0 795 2 2078 122 0 10 chr13 72963177 72963498 -46781400 + AluSx SINE Alu 1 312 0 2915 144 19 2 chr13 72963660 72964140 -46780758 - L1MB3 LINE L1 -53 6366 5879 1911 203 39 20 chr13 72964215 72964600 -46780298 + MER39 LTR ERV1 260 655 -52 2618 110 0 0 chr13 72964600 72964964 -46779934 + THE1B LTR MaLR 1 364 0 1911 203 39 20 chr13 72964964 72965017 -46779881 + MER39 LTR ERV1 655 706 -1 6064 211 52 33 chr13 72965018 72966364 -46778534 - L1MB3 LINE L1 -538 5881 4562 249 33 0 0 chr13 72966364 72966394 -46778504 + (TG)n Simple_repeat Simple_repeat 2 31 0 6064 211 52 33 chr13 72966394 72966857 -46778041 - L1MB3 LINE L1 -1857 4562 4028 1167 214 94 40 chr13 72966857 72967231 -46777667 - MSTD LTR MaLR -2 394 1 6064 211 52 33 chr13 72967231 72967396 -46777502 - L1MB3 LINE L1 -2391 4028 3868 411 250 11 0 chr13 72967417 72967509 -46777389 - MER70B LTR ERVL -32 546 454 2863 266 25 18 chr13 72967952 72969009 -46775889 - L1MB3 LINE L1 -2493 3889 2826 887 262 122 25 chr13 72969011 72969332 -46775566 - MLT1A1 LTR MaLR -13 352 1 3654 171 53 35 chr13 72969332 72970778 -46774120 - L1MB3 LINE L1 -3552 2830 1265 412 276 76 48 chr13 72973412 72973557 -46771341 - MER5A DNA MER1_type -40 149 1 2162 118 0 16 chr13 72974168 72974473 -46770425 - AluSx SINE Alu -12 300 1 494 235 36 10 chr13 72974911 72975113 -46769785 + MLT1J2 LTR MaLR 3 175 -272 1158 55 0 0 chr13 72977594 72977740 -46767158 + L1PA8 LINE L1 6025 6170 -2 200 246 18 0 chr13 72978087 72978144 -46766754 + (TA)n Simple_repeat Simple_repeat 1 58 0 323 239 123 123 chr13 72978170 72978308 -46766590 + MIR SINE MIR 3 141 -67 28 0 0 0 chr13 72979115 72979143 -46765755 + AT_rich Low_complexity Low_complexity 1 28 0 216 320 147 7 chr13 72979404 72979554 -46765344 - MIR SINE MIR -44 218 48 326 302 38 19 chr13 72979580 72979686 -46765212 + MIR SINE MIR 155 262 0 215 331 110 31 chr13 72980629 72980756 -46764142 + MIR SINE MIR 16 152 -110 726 263 99 67 chr13 72980784 72981026 -46763872 - MLT1J2 LTR MaLR -10 440 207 2466 235 9 20 chr13 72981026 72981583 -46763315 - MLT2B3 LTR ERVL -3 551 1 726 263 99 67 chr13 72981583 72981725 -46763173 - MLT1J2 LTR MaLR -243 207 36 416 210 31 164 chr13 72981725 72981920 -46762978 + MER96 DNA MER1_type 5 173 -2 726 263 99 67 chr13 72981920 72981958 -46762940 - MLT1J2 LTR MaLR -414 36 1 24 32 0 0 chr13 72982158 72982189 -46762709 + AT_rich Low_complexity Low_complexity 1 31 0 374 303 54 93 chr13 72982878 72982975 -46761923 - L2 LINE L2 0 3272 3173 2149 89 0 0 chr13 72982975 72983244 -46761654 + AluSg SINE Alu 1 269 -41 227 31 31 0 chr13 72983244 72983276 -46761622 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 374 303 54 93 chr13 72983276 72983484 -46761414 - L2 LINE L2 -97 3175 2973 250 276 35 26 chr13 72983792 72983908 -46760990 - L1MC5 LINE L1 -183 7778 7662 242 296 14 14 chr13 72984013 72984084 -46760814 + GA-rich Low_complexity Low_complexity 4 74 0 373 360 107 29 chr13 72984282 72984554 -46760344 + L3 LINE CR1 207 499 -1078 665 241 63 52 chr13 72985076 72985267 -46759631 - MIR SINE MIR -64 198 6 245 279 33 0 chr13 72985280 72985341 -46759557 + MIR SINE MIR 200 262 0 244 237 194 11 chr13 72985340 72985433 -46759465 - MIR SINE MIR -64 198 89 * 819 246 12 0 chr13 72986439 72986606 -46758292 - FAM SINE Alu -5 170 2 3230 213 65 23 chr13 72986610 72986644 -46758254 - L1MB3 LINE L1 -355 5828 5797 261 0 0 0 chr13 72986644 72986673 -46758225 + (TG)n Simple_repeat Simple_repeat 2 30 0 3230 213 65 23 chr13 72986673 72988157 -46756741 - L1MB3 LINE L1 -386 5797 4256 970 204 173 7 chr13 72988367 72988656 -46756242 + L1MC4 LINE L1 6703 7039 -1003 682 240 42 64 chr13 72988680 72988963 -46755935 + L1MC4 LINE L1 7506 7782 -260 397 203 65 16 chr13 72988995 72989118 -46755780 + L1MC4 LINE L1 7914 8042 0 299 47 0 81 chr13 72989130 72989216 -46755682 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 428 212 0 12 chr13 72989316 72989401 -46755497 - FRAM SINE Alu -43 133 50 22 35 0 0 chr13 72991823 72991852 -46753046 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr13 72991891 72991911 -46752987 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6540 28 0 0 chr13 72992940 72993798 -46751100 + L1P1 LINE L1 4608 5465 -690 7588 26 6 0 chr13 72993798 72994750 -46750148 + L1PA3 LINE L1 5201 6154 -1 213 139 0 23 chr13 72995419 72995462 -46749436 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 54 49 0 0 chr13 72996592 72996674 -46748224 + AT_rich Low_complexity Low_complexity 1 82 0 267 312 53 63 chr13 72997080 72997269 -46747629 + L2 LINE L2 2905 3091 -181 216 0 0 0 chr13 72999571 72999595 -46745303 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr13 72999778 72999802 -46745096 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 73001482 73001503 -46743395 + AT_rich Low_complexity Low_complexity 1 21 0 2242 191 25 81 chr13 73001892 73002522 -46742376 - L1MB3 LINE L1 -1875 4271 3677 1851 174 0 13 chr13 73003437 73003742 -46741156 + AluJo SINE Alu 1 301 -11 345 336 72 57 chr13 73004539 73005041 -46739857 - L2 LINE L2 -5 3267 2713 2476 161 32 7 chr13 73005674 73006085 -46738813 - MSTB LTR MaLR 0 426 6 239 155 42 14 chr13 73006172 73006243 -46738655 + CT-rich Low_complexity Low_complexity 1 73 0 2233 110 3 0 chr13 73006243 73006542 -46738356 - AluSp SINE Alu -13 300 1 213 39 0 0 chr13 73006591 73006617 -46738281 + (TAA)n Simple_repeat Simple_repeat 3 28 0 192 323 104 10 chr13 73006992 73007088 -46737810 + MIR SINE MIR 34 138 -70 325 156 16 16 chr13 73007130 73007194 -46737704 + LTR37B LTR ERV1 23 86 -382 194 173 0 39 chr13 73007826 73007878 -46737020 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 308 225 72 45 chr13 73009588 73009699 -46735199 + L1MEc LINE L1 284 397 -5999 794 257 135 41 chr13 73009763 73009964 -46734934 + L1MEc LINE L1 615 796 -5419 3622 151 15 42 chr13 73009964 73010719 -46734179 + L1MA8 LINE L1 5552 6285 -6 794 257 135 41 chr13 73010719 73011389 -46733509 + L1MEc LINE L1 796 1518 -4697 279 0 0 0 chr13 73011393 73011424 -46733474 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1478 86 0 0 chr13 73011424 73011622 -46733276 - L1PA5 LINE L1 -18 6136 5939 24 53 0 0 chr13 73011672 73011710 -46733188 + AT_rich Low_complexity Low_complexity 1 38 0 811 237 127 11 chr13 73011747 73012030 -46732868 + L1MD3 LINE L1 7678 7993 -2 409 219 62 94 chr13 73012031 73012223 -46732675 + L1MEc LINE L1 1629 1814 -4582 231 36 0 0 chr13 73012299 73012327 -46732571 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 311 167 0 0 chr13 73012333 73012387 -46732511 + L1P LINE L1 4927 4980 -1166 401 202 296 30 chr13 73012443 73012646 -46732252 + L1MEc LINE L1 1907 2163 -4233 537 228 10 0 chr13 73012654 73012755 -46732143 + MSTD LTR MaLR 248 349 -47 595 239 55 56 chr13 73012755 73013190 -46731708 + L1MEc LINE L1 2153 2564 -3651 1514 214 80 18 chr13 73013204 73013653 -46731245 + L1ME1 LINE L1 5672 6148 -18 5250 161 13 34 chr13 73013870 73014845 -46730053 + L1PA16 LINE L1 4398 5346 -820 1788 110 0 20 chr13 73014845 73015100 -46729798 + AluSc SINE Alu 45 294 -15 5250 161 13 34 chr13 73015100 73015896 -46729002 + L1PA16 LINE L1 5346 6157 -9 26 0 0 0 chr13 73016155 73016181 -46728717 + AT_rich Low_complexity Low_complexity 1 26 0 203 386 59 47 chr13 73016556 73016810 -46728088 + L2 LINE L2 3016 3272 0 282 410 34 10 chr13 73017223 73017633 -46727265 + L1MEc LINE L1 465 884 -5941 887 264 66 35 chr13 73018034 73018718 -46726180 + L1MEc LINE L1 1032 1649 -4893 1989 141 0 0 chr13 73018735 73019011 -46725887 - AluSg1 SINE Alu -31 278 3 506 149 11 0 chr13 73019012 73019106 -46725792 - L1PA16 LINE L1 -128 6038 5944 1738 277 38 40 chr13 73019127 73019857 -46725041 + L1ME2 LINE L1 5435 6163 -1 909 98 15 0 chr13 73020671 73020803 -46724095 - L1PA16 LINE L1 0 6166 6033 234 91 0 0 chr13 73020863 73020896 -46724002 + (A)n Simple_repeat Simple_repeat 1 33 0 1757 195 132 140 chr13 73021334 73021991 -46722907 + MLT1E2 LTR MaLR 1 624 -2 2219 152 26 0 chr13 73021997 73022345 -46722553 + LTR18A LTR ERVL 1 357 0 8764 224 25 2 chr13 73022369 73023943 -46720955 + HERVL18 LTR ERVL 791 2400 -3647 19567 156 11 24 chr13 73023943 73027154 -46717744 + HERVL18 LTR ERVL 2879 6047 0 2465 130 17 6 chr13 73027155 73027508 -46717390 + LTR18A LTR ERVL 1 357 0 271 293 71 0 chr13 73027808 73027907 -46716991 + MIR SINE MIR 122 227 -35 282 259 9 86 chr13 73028531 73028647 -46716251 + MIR3 SINE MIR 88 194 -14 614 206 15 15 chr13 73030927 73031063 -46713835 + MER5B DNA MER1_type 1 136 -42 319 250 100 8 chr13 73031099 73031219 -46713679 - L2 LINE L2 -1291 2023 1893 338 108 10 157 chr13 73031219 73031321 -46713577 - MLT2B1 LTR ERVL 0 520 434 230 214 0 86 chr13 73032240 73032310 -46712588 + MIR SINE MIR 185 248 -14 242 282 121 34 chr13 73032781 73032930 -46711968 + L2 LINE L2 2185 2346 -968 * 289 341 33 0 chr13 73032928 73033019 -46711879 + MIR SINE MIR 155 248 -14 240 199 205 40 chr13 73034554 73034705 -46710193 + MIR SINE MIR 9 184 -78 1919 141 0 3 chr13 73034737 73035048 -46709850 + AluSx SINE Alu 1 310 0 23 33 0 0 chr13 73035048 73035078 -46709820 + AT_rich Low_complexity Low_complexity 1 30 0 1742 167 3 7 chr13 73035086 73035373 -46709525 + AluJo SINE Alu 15 300 -12 801 307 73 38 chr13 73035517 73036631 -46708267 - L1MEd LINE L1 -4641 1669 463 30 27 0 0 chr13 73037034 73037071 -46707827 + AT_rich Low_complexity Low_complexity 1 37 0 467 311 51 28 chr13 73039114 73039291 -46705607 + MIR SINE MIR 46 226 -36 1505 110 50 0 chr13 73039374 73039593 -46705305 - MER30 DNA MER1_type 0 230 1 635 227 7 14 chr13 73041437 73041616 -46703282 + FRAM SINE Alu 12 189 0 22 0 0 0 chr13 73041863 73041885 -46703013 + AT_rich Low_complexity Low_complexity 1 22 0 274 256 12 12 chr13 73041949 73042035 -46702863 - LTR67 LTR ERVL -21 536 451 389 362 65 49 chr13 73043076 73043322 -46701576 + L1MEd LINE L1 938 1187 -5343 945 289 82 24 chr13 73043333 73044090 -46700808 + L1MEd LINE L1 2469 3275 -3265 556 261 124 8 chr13 73044117 73044473 -46700425 + L1MEd LINE L1 4483 4879 -1661 487 250 10 0 chr13 73044508 73044608 -46700290 + MER5A DNA MER1_type 9 109 -80 2236 167 11 72 chr13 73044672 73045127 -46699771 - MER54B LTR ERVL -111 682 256 4141 223 117 35 chr13 73045135 73046126 -46698772 - L1 LINE L1 -3165 4400 3492 1292 214 68 20 chr13 73046126 73046420 -46698478 - AluJo SINE Alu -2 310 3 4141 223 117 35 chr13 73046420 73047632 -46697266 - L1 LINE L1 -4073 3492 2008 1841 224 47 52 chr13 73047947 73048484 -46696414 - L1 LINE L1 -6490 999 466 787 188 113 0 chr13 73048682 73048842 -46696056 - MER5B DNA MER1_type 0 178 1 1252 176 25 4 chr13 73048996 73049235 -46695663 + MLT2D LTR ERVL 1 244 -170 290 224 0 71 chr13 73049345 73049443 -46695455 + LTR67 LTR ERVL 457 547 -10 430 337 52 0 chr13 73049444 73049693 -46695205 + MIR SINE MIR 1 262 0 24 67 0 0 chr13 73050836 73050881 -46694017 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr13 73050945 73050967 -46693931 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 73051658 73051689 -46693209 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 73051826 73051847 -46693051 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr13 73054309 73054371 -46690527 + AT_rich Low_complexity Low_complexity 1 62 0 5435 95 16 4 chr13 73054371 73055174 -46689724 - L1MA2 LINE L1 0 6304 5492 694 250 37 45 chr13 73055328 73055588 -46689310 + L1MCa LINE L1 2 240 -5805 205 416 40 0 chr13 73056240 73056365 -46688533 - L2 LINE L2 0 3272 3143 187 286 38 67 chr13 73057140 73057245 -46687653 - L2 LINE L2 -244 3028 2927 616 217 0 0 chr13 73057527 73057642 -46687256 + 5S rRNA rRNA 7 121 0 5009 223 72 130 chr13 73057671 73060362 -46684536 + L1PA15-16 LINE L1 12 2544 -4305 6349 97 5 16 chr13 73060362 73062073 -46682825 - L1PA10 LINE L1 0 6168 4480 3580 164 6 3 chr13 73062083 73062754 -46682144 - L1PA10 LINE L1 -2580 3566 2894 3071 266 45 12 chr13 73062753 73063875 -46681023 + L1PA15-16 LINE L1 2508 3665 -3184 * 1228 220 59 7 chr13 73113892 73114196 -46630702 + MLT1D LTR MaLR 181 500 -5 23 0 0 0 chr13 73114890 73114913 -46629985 + AT_rich Low_complexity Low_complexity 1 23 0 1303 253 66 30 chr13 73114967 73115557 -46629341 - L1MC5 LINE L1 -37 7924 7314 519 78 0 13 chr13 73115747 73115819 -46629079 - L1P1 LINE L1 -382 5773 5702 2105 47 0 0 chr13 73115819 73116060 -46628838 + L1PA3 LINE L1 5899 6152 -3 452 306 206 9 chr13 73116314 73116533 -46628365 - MIR SINE MIR 0 262 1 216 0 0 0 chr13 73117157 73117181 -46627717 + (CA)n Simple_repeat Simple_repeat 2 25 0 215 304 88 32 chr13 73117218 73117343 -46627555 + MIR SINE MIR 6 137 -125 27 0 0 0 chr13 73117414 73117441 -46627457 + AT_rich Low_complexity Low_complexity 1 27 0 355 286 10 0 chr13 73117662 73117760 -46627138 + MIR SINE MIR 53 151 -111 540 242 104 61 chr13 73117771 73118210 -46626688 - MLT1J2 LTR MaLR -13 498 3 302 219 134 0 chr13 73118219 73118301 -46626597 + MIR SINE MIR 164 256 -6 1215 161 0 52 chr13 73118398 73118609 -46626289 + AluJb SINE Alu 86 285 -27 204 283 80 80 chr13 73118771 73118909 -46625989 - MIR SINE MIR -95 167 30 21 36 0 0 chr13 73119483 73119511 -46625387 + AT_rich Low_complexity Low_complexity 1 28 0 429 298 202 5 chr13 73119761 73119959 -46624939 + MIR SINE MIR 10 246 -16 213 391 68 0 chr13 73121201 73121334 -46623564 - MIR SINE MIR -64 198 57 252 0 0 0 chr13 73122600 73122628 -46622270 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 29 47 0 0 chr13 73123703 73123746 -46621152 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 73125108 73125129 -46619769 + AT_rich Low_complexity Low_complexity 1 21 0 196 319 87 0 chr13 73125489 73125558 -46619340 + L2 LINE L2 2913 2987 -285 360 136 17 0 chr13 73125707 73125766 -46619132 + L2 LINE L2 3246 3305 -8 219 36 0 0 chr13 73125768 73125796 -46619102 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 228 288 0 119 chr13 73126199 73126264 -46618634 + L2 LINE L2 3166 3202 -111 2168 95 7 3 chr13 73126264 73126559 -46618339 - AluSx SINE Alu -9 303 8 228 288 0 119 chr13 73126559 73126653 -46618245 + L2 LINE L2 3202 3306 -7 372 194 0 22 chr13 73128046 73128122 -46616776 - MLT1I LTR MaLR 0 409 344 2317 79 3 0 chr13 73129050 73129342 -46615556 - AluY SINE Alu -18 293 1 2360 60 0 47 chr13 73129355 73129672 -46615226 - AluY SINE Alu -9 302 1 334 123 49 49 chr13 73130482 73130514 -46614384 + MER45B DNA AcHobo 753 784 -256 21725 35 1 1 chr13 73130514 73133937 -46610961 + L1PA5 LINE L1 2737 6154 0 334 123 49 49 chr13 73133937 73133985 -46610913 + MER45B DNA AcHobo 783 833 -207 800 104 0 0 chr13 73134002 73134117 -46610781 + L1PA5 LINE L1 6036 6150 -4 511 352 42 32 chr13 73134142 73135155 -46609743 + HERV16 LTR ERVL 1108 2245 -3409 278 356 35 17 chr13 73135206 73135380 -46609518 + HERV16 LTR ERVL 2536 2712 -3052 540 359 34 17 chr13 73135681 73135976 -46608922 + HERV16 LTR ERVL 3009 3308 -2177 2576 103 3 14 chr13 73136025 73136384 -46608514 + THE1B LTR MaLR 10 364 0 1241 322 42 49 chr13 73136418 73137213 -46607685 + HERV16 LTR ERVL 3425 4213 -1551 381 349 111 35 chr13 73137260 73137575 -46607323 + LTR16C LTR ERVL 152 490 -1 7616 219 31 75 chr13 73137605 73139764 -46605134 + L1MA4A LINE L1 11 2074 -4775 * 9397 181 25 20 chr13 73139749 73142193 -46602705 + L1MA4A LINE L1 4029 6494 -511 312 27 0 0 chr13 73142193 73142230 -46602668 + (CA)n Simple_repeat Simple_repeat 2 38 0 9397 181 25 20 chr13 73142230 73142740 -46602158 + L1MA4A LINE L1 6494 7000 -5 686 281 52 28 chr13 73142817 73143314 -46601584 + L1ME LINE L1 1117 1668 -4642 613 209 132 0 chr13 73143431 73143560 -46601338 + FAM SINE Alu 21 166 -19 388 234 103 34 chr13 73143916 73143987 -46600911 + L1ME LINE L1 2159 2224 -3905 230 0 0 32 chr13 73143987 73144018 -46600880 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 388 234 103 34 chr13 73144018 73144121 -46600777 + L1ME LINE L1 2224 2345 -3784 433 274 177 37 chr13 73144199 73144527 -46600371 + L1ME LINE L1 2832 3205 -2924 539 285 49 23 chr13 73144709 73145014 -46599884 + L1ME LINE L1 3769 4081 -2048 1113 216 143 49 chr13 73145046 73145472 -46599426 + MLT1C LTR MaLR 2 467 0 320 291 67 36 chr13 73145761 73145926 -46598972 + L1ME LINE L1 4865 5034 -1095 21 36 0 0 chr13 73145994 73146022 -46598876 + AT_rich Low_complexity Low_complexity 1 28 0 634 294 107 35 chr13 73146126 73146605 -46598293 + L1ME LINE L1 5247 5759 -386 474 263 23 0 chr13 73146738 73146871 -46598027 - L1 LINE L1 -1956 4190 4055 12777 92 17 10 chr13 73147051 73149651 -46595247 + L1PA7 LINE L1 3544 6144 -10 24 32 0 0 chr13 73149651 73149682 -46595216 + AT_rich Low_complexity Low_complexity 1 31 0 1996 90 0 30 chr13 73149682 73149950 -46594948 + AluY SINE Alu 38 297 -14 22 0 0 0 chr13 73151371 73151393 -46593505 + AT_rich Low_complexity Low_complexity 1 22 0 333 226 14 66 chr13 73151774 73151935 -46592963 - MLT2F LTR ERVL -1 662 252 235 128 26 0 chr13 73151950 73151989 -46592909 - MLT2F LTR ERVL -141 522 483 291 190 40 22 chr13 73152208 73152290 -46592608 - MLT1E1 LTR MaLR -437 210 100 547 272 0 7 chr13 73152291 73152427 -46592471 - MLT2F LTR ERVL -522 141 7 934 216 57 12 chr13 73152554 73152799 -46592099 - MIR SINE MIR -4 258 3 217 330 270 0 chr13 73154259 73154374 -46590524 - MIR3 SINE MIR 0 208 63 446 326 52 12 chr13 73154478 73154650 -46590248 - MLT1J LTR MaLR -99 412 234 1264 226 19 48 chr13 73154818 73155000 -46589898 + MLT1A2 LTR MaLR 1 168 -206 231 36 0 0 chr13 73155000 73155028 -46589870 + (TC)n Simple_repeat Simple_repeat 1 28 0 1264 226 19 48 chr13 73155028 73155217 -46589681 + MLT1A2 LTR MaLR 168 361 -13 294 287 55 67 chr13 73155510 73155674 -46589224 + MIR SINE MIR 87 248 -14 1050 200 5 0 chr13 73155700 73155890 -46589008 - MER58A DNA MER1_type 0 224 34 239 245 181 21 chr13 73156254 73156348 -46588550 - L2 LINE L2 -5 3308 3200 610 273 33 6 chr13 73157950 73158133 -46586765 + MIR SINE MIR 29 216 -46 2107 86 8 0 chr13 73160148 73160459 -46584439 + AluSp SINE Alu 14 326 0 3425 153 41 14 chr13 73161562 73162198 -46582700 + L1PB4 LINE L1 5491 6143 -13 2088 121 7 0 chr13 73162270 73162560 -46582338 - AluSx SINE Alu 0 312 21 199 139 13 177 chr13 73162781 73162860 -46582038 + L2 LINE L2 3184 3249 -23 1185 238 16 29 chr13 73163575 73163890 -46581008 + Charlie2 DNA MER1_type 8 318 -2544 333 81 32 16 chr13 73163931 73163993 -46580905 - L1MA4A LINE L1 -11 6292 6230 321 243 124 40 chr13 73163993 73164170 -46580728 + Charlie2 DNA MER1_type 1868 2059 -803 3833 236 49 38 chr13 73164171 73164947 -46579951 + MER45B DNA AcHobo 1 792 -789 18689 44 3 1 chr13 73164947 73168068 -46576830 + L1PA5 LINE L1 3016 6154 0 3833 236 49 38 chr13 73168068 73168320 -46576578 + MER45B DNA AcHobo 792 1040 0 233 175 48 16 chr13 73168679 73168742 -46576156 + (TA)n Simple_repeat Simple_repeat 1 65 0 1702 136 83 0 chr13 73169984 73170090 -46574808 - L1MA9 LINE L1 -38 6274 6178 309 51 0 0 chr13 73170090 73170129 -46574769 + (TG)n Simple_repeat Simple_repeat 1 39 0 1702 136 83 0 chr13 73170129 73170324 -46574574 - L1MA9 LINE L1 -134 6178 5948 2536 107 25 0 chr13 73171259 73171614 -46573284 + THE1B LTR MaLR 1 364 0 254 256 77 0 chr13 73171619 73171697 -46573201 + MIR SINE MIR 120 203 -59 3925 282 82 24 chr13 73171886 73173075 -46571823 + L2 LINE L2 1387 2708 -605 1650 196 39 21 chr13 73173075 73173458 -46571440 + MLT1B LTR MaLR 1 390 0 3925 282 82 24 chr13 73173458 73174037 -46570861 + L2 LINE L2 2708 3252 -61 197 211 123 0 chr13 73175746 73175803 -46569095 - MIR SINE MIR -2 260 197 2354 66 0 0 chr13 73177416 73177719 -46567179 - L1PA7 LINE L1 -3 6151 5849 301 49 24 0 chr13 73177719 73177760 -46567138 + L1P3 LINE L1 5764 5805 -349 258 273 0 0 chr13 73178238 73178293 -46566605 + L2 LINE L2 3259 3313 0 234 325 97 26 chr13 73178737 73178851 -46566047 + MIR SINE MIR 51 172 -90 441 275 24 69 chr13 73180146 73180308 -46564590 + L1MC/D LINE L1 5303 5452 -2356 1971 132 42 0 chr13 73180308 73180596 -46564302 - AluSx SINE Alu -12 300 1 441 275 24 69 chr13 73180596 73180680 -46564218 + L1MC/D LINE L1 5452 5538 -2270 21 0 0 0 chr13 73180931 73180952 -46563946 + AT_rich Low_complexity Low_complexity 1 21 0 2160 134 0 0 chr13 73180952 73181244 -46563654 - AluSq SINE Alu -17 296 5 26 23 0 23 chr13 73181257 73181276 -46563622 + AT_rich Low_complexity Low_complexity 1 19 -24 907 105 0 0 chr13 73181276 73181409 -46563489 + L1PB1 LINE L1 6019 6151 0 26 23 0 23 chr13 73181409 73181433 -46563465 + AT_rich Low_complexity Low_complexity 19 43 0 1011 202 54 0 chr13 73181511 73181677 -46563221 - AluJb SINE Alu -14 298 118 200 33 0 33 chr13 73181677 73181707 -46563191 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1011 202 54 0 chr13 73181707 73181743 -46563155 - AluJb SINE Alu -194 118 85 21 36 0 0 chr13 73182021 73182049 -46562849 + AT_rich Low_complexity Low_complexity 1 28 0 874 180 16 16 chr13 73183693 73183882 -46561016 + MER53 DNA DNA 1 189 0 400 123 14 68 chr13 73184208 73184306 -46560592 + AluS SINE Alu 228 302 0 308 309 49 19 chr13 73184378 73184540 -46560358 + MLT1J LTR MaLR 344 510 -1 189 392 8 8 chr13 73186076 73186196 -46558702 + L2 LINE L2 2497 2616 -698 225 372 8 16 chr13 73186223 73186344 -46558554 - L2 LINE L2 -564 2750 2631 * 233 300 0 33 chr13 73186340 73186430 -46558468 + L2 LINE L2 2664 2750 -564 431 282 227 0 chr13 73187170 73187333 -46557565 - MIR SINE MIR -22 240 41 1513 106 10 0 chr13 73187382 73187581 -46557317 - AluSq SINE Alu -92 221 21 23 33 0 0 chr13 73188155 73188185 -46556713 + AT_rich Low_complexity Low_complexity 1 30 0 2513 102 10 16 chr13 73188301 73188684 -46556214 - L1PB1 LINE L1 -3 6148 5768 21 57 0 0 chr13 73188874 73188909 -46555989 + AT_rich Low_complexity Low_complexity 1 35 0 545 281 281 10 chr13 73188933 73189228 -46555670 + L2 LINE L2 2934 3308 -5 242 313 56 14 chr13 73189919 73190063 -46554835 - L1 LINE L1 -2367 3779 3630 327 339 38 27 chr13 73190128 73190314 -46554584 + L2 LINE L2 2903 3090 -182 216 0 0 0 chr13 73191014 73191038 -46553860 + (T)n Simple_repeat Simple_repeat 1 24 0 865 132 7 0 chr13 73191576 73191712 -46553186 + L1MA9 LINE L1 5607 5743 -569 209 139 28 0 chr13 73191719 73191755 -46553143 + (TA)n Simple_repeat Simple_repeat 2 38 0 242 177 0 65 chr13 73191755 73191817 -46553081 - L1M2 LINE L1 -510 5802 5745 246 62 0 0 chr13 73191887 73191919 -46552979 + (TG)n Simple_repeat Simple_repeat 2 33 0 2514 161 9 74 chr13 73191919 73192484 -46552414 + L1MA9 LINE L1 5785 6312 0 240 200 100 22 chr13 73192485 73192575 -46552323 - L1ME4a LINE L1 -21 6100 6004 21 0 0 0 chr13 73192587 73192608 -46552290 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 73193042 73193070 -46551828 + AT_rich Low_complexity Low_complexity 1 28 0 306 297 145 0 chr13 73193124 73193262 -46551636 - L1ME LINE L1 -488 5633 5476 29 60 0 0 chr13 73193301 73193351 -46551547 + AT_rich Low_complexity Low_complexity 1 50 0 2110 158 28 0 chr13 73193510 73193864 -46551034 - THE1B LTR MaLR 0 364 1 416 317 34 44 chr13 73195022 73195227 -46549671 + MIR SINE MIR 25 227 -35 1107 245 150 55 chr13 73195252 73195746 -46549152 - MLT1E LTR MaLR 0 593 53 284 215 0 15 chr13 73195800 73195865 -46549033 - MLT1K LTR MaLR 0 588 525 238 404 0 0 chr13 73196182 73196291 -46548607 - MLT1K LTR MaLR -339 249 141 261 225 93 31 chr13 73196440 73196569 -46548329 - L1MC4 LINE L1 -74 7968 7832 981 180 0 0 chr13 73196758 73196919 -46547979 + AluSg/x SINE Alu 145 305 -7 7349 28 12 8 chr13 73197517 73198459 -46546439 + L1PA3 LINE L1 5207 6152 -3 25 51 0 0 chr13 73198569 73198608 -46546290 + AT_rich Low_complexity Low_complexity 1 39 0 360 203 54 0 chr13 73199146 73199220 -46545678 + MLT1J1 LTR MaLR 353 430 -16 21 36 0 0 chr13 73199807 73199835 -46545063 + AT_rich Low_complexity Low_complexity 1 28 0 275 309 93 7 chr13 73200225 73200378 -46544520 + MIR SINE MIR 17 188 -63 255 333 67 0 chr13 73200602 73200722 -46544176 + MIR SINE MIR 17 144 -64 240 333 27 0 chr13 73202468 73202543 -46542355 - MIR SINE MIR -97 111 35 376 295 11 0 chr13 73202712 73202805 -46542093 + MLT1G LTR MaLR 2 95 -460 1895 191 60 25 chr13 73202805 73202816 -46542082 + MSTB1 LTR MaLR 1 10 -422 4779 93 11 1 chr13 73202816 73203470 -46541428 + PABL_A LTR ERV1 1 660 0 1895 191 60 25 chr13 73203470 73203860 -46541038 + MSTB1 LTR MaLR 10 416 -16 442 314 73 44 chr13 73203868 73204142 -46540756 + MLT1G LTR MaLR 92 373 -182 1733 174 117 59 chr13 73204224 73204702 -46540196 + MER67D LTR ERV1 1 506 -8 2320 96 0 6 chr13 73204703 73205015 -46539883 - AluY SINE Alu -1 310 1 670 183 17 106 chr13 73205058 73205238 -46539660 + MLT1G LTR MaLR 425 588 -2 210 136 0 0 chr13 73205239 73205283 -46539615 + (TC)n Simple_repeat Simple_repeat 2 45 0 267 173 0 0 chr13 73205284 73205336 -46539562 + (TA)n Simple_repeat Simple_repeat 1 52 0 895 154 22 110 chr13 73205340 73205567 -46539331 + MER6B DNA MER2_type 1 207 -3 325 235 20 39 chr13 73205567 73205669 -46539229 - L1MC4 LINE L1 -1340 6702 6603 925 255 68 12 chr13 73209093 73209418 -46535480 - L1M4 LINE L1 -1727 4419 4077 * 4182 221 98 81 chr13 73209414 73211261 -46533637 - L1MDa LINE L1 -4375 2165 139 1905 171 3 0 chr13 73211261 73211554 -46533344 + AluSx SINE Alu 3 296 -16 4182 221 98 81 chr13 73211554 73211679 -46533219 - L1MDa LINE L1 -6401 139 18 22 80 0 0 chr13 73211710 73211760 -46533138 + AT_rich Low_complexity Low_complexity 1 50 0 932 297 55 43 chr13 73212119 73212660 -46532238 - L2 LINE L2 -131 3182 2623 258 309 57 23 chr13 73212685 73212860 -46532038 - MLT1J LTR MaLR -2 509 329 322 188 12 59 chr13 73213069 73213154 -46531744 - MLT1J LTR MaLR -447 64 1 1327 223 33 20 chr13 73213320 73213592 -46531306 + AluJo SINE Alu 1 279 -33 210 37 0 0 chr13 73213592 73213619 -46531279 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1327 223 33 20 chr13 73213619 73213651 -46531247 + AluJo SINE Alu 279 309 -3 365 263 151 65 chr13 73213759 73213991 -46530907 + MLT1H LTR MaLR 179 430 -119 270 0 0 0 chr13 73214496 73214526 -46530372 + (TA)n Simple_repeat Simple_repeat 2 31 0 27 96 0 0 chr13 73215448 73215531 -46529367 + AT_rich Low_complexity Low_complexity 1 83 0 183 167 0 0 chr13 73215582 73215624 -46529274 + (CA)n Simple_repeat Simple_repeat 1 42 0 1726 168 80 14 chr13 73216079 73216442 -46528456 + MLT1B LTR MaLR 4 390 0 21 0 0 0 chr13 73216456 73216477 -46528421 + AT_rich Low_complexity Low_complexity 1 21 0 328 204 11 43 chr13 73217126 73217219 -46527679 + L1MC4 LINE L1 6613 6702 -1340 180 0 0 0 chr13 73217875 73217895 -46527003 + (TA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr13 73218043 73218063 -46526835 + (A)n Simple_repeat Simple_repeat 1 20 0 530 312 109 0 chr13 73218200 73218421 -46526477 + MIR SINE MIR 18 262 0 495 0 0 0 chr13 73219005 73219060 -46525838 + (TG)n Simple_repeat Simple_repeat 2 56 0 222 136 0 0 chr13 73219060 73219104 -46525794 + (GA)n Simple_repeat Simple_repeat 2 45 0 183 80 0 0 chr13 73219263 73219288 -46525610 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2089 191 19 15 chr13 73220938 73221403 -46523495 - MLT1C LTR MaLR 0 467 1 807 258 138 13 chr13 73221811 73222036 -46522862 + MIR SINE MIR 6 258 -4 489 321 29 45 chr13 73222381 73222624 -46522274 - MIR SINE MIR -16 246 8 38 61 0 0 chr13 73222650 73222716 -46522182 + AT_rich Low_complexity Low_complexity 1 66 0 343 269 187 15 chr13 73223918 73224052 -46520846 - MER5A DNA MER1_type 0 189 33 710 243 103 52 chr13 73224793 73225216 -46519682 + MLT1D LTR MaLR 1 443 -24 606 196 30 0 chr13 73225253 73225386 -46519512 - L1MA3 LINE L1 0 6305 6169 764 185 0 22 chr13 73225407 73225542 -46519356 - FLAM_C SINE Alu -1 132 1 480 371 73 27 chr13 73225810 73226409 -46518489 - L2 LINE L2 -729 2585 1959 855 308 75 5 chr13 73226519 73226931 -46517967 + HAL1 LINE L1 1620 2060 -447 454 262 143 51 chr13 73226940 73227234 -46517664 + HAL1 LINE L1 2153 2473 -34 1250 152 53 15 chr13 73227357 73227621 -46517277 + L1MA4 LINE L1 6022 6295 -5 207 394 44 22 chr13 73227782 73227891 -46517007 + MER5A DNA MER1_type 4 120 -69 746 164 189 25 chr13 73227891 73228092 -46516806 - MER46A DNA MER2_type -2 234 1 207 394 44 22 chr13 73228092 73228162 -46516736 + MER5A DNA MER1_type 120 187 -2 21 0 0 0 chr13 73228976 73228997 -46515901 + AT_rich Low_complexity Low_complexity 1 21 0 201 271 12 54 chr13 73230535 73230653 -46514245 - L2 LINE L2 -233 3039 2929 227 270 108 27 chr13 73230679 73230790 -46514108 - LTR16C LTR ERVL -10 481 362 619 195 0 0 chr13 73230817 73230930 -46513968 + L1PB4 LINE L1 6020 6132 -24 390 347 123 33 chr13 73231606 73232061 -46512837 - L2 LINE L2 -2 3311 2816 515 317 28 11 chr13 73232814 73232994 -46511904 + L3b LINE CR1 1109 1291 -292 223 370 109 34 chr13 73235200 73235319 -46509579 - MIR3 SINE MIR -37 171 44 352 179 0 0 chr13 73235495 73235562 -46509336 - MSTA LTR MaLR 0 428 362 2485 27 0 78 chr13 73235564 73235895 -46509003 + AluY SINE Alu 1 305 -6 2780 129 79 4 chr13 73235902 73236368 -46508530 - L1PA15 LINE L1 -301 5864 5364 23 33 0 0 chr13 73238526 73238556 -46506342 + AT_rich Low_complexity Low_complexity 1 30 0 2504 60 0 0 chr13 73238928 73239228 -46505670 - AluY SINE Alu -11 300 1 320 282 84 99 chr13 73239811 73240144 -46504754 - MLT1I LTR MaLR -2 407 80 191 346 13 26 chr13 73240294 73240372 -46504526 - L3b LINE CR1 -402 1181 1105 815 221 30 30 chr13 73240791 73240990 -46503908 + MER20 DNA MER1_type 21 219 0 275 396 32 14 chr13 73241202 73241419 -46503479 + MLT1I LTR MaLR 38 258 -151 2250 121 0 0 chr13 73241654 73241951 -46502947 - AluSc SINE Alu -12 297 1 22 80 0 0 chr13 73242780 73242830 -46502068 + AT_rich Low_complexity Low_complexity 1 50 0 197 310 14 0 chr13 73242868 73242939 -46501959 - MIR SINE MIR -35 227 156 22 56 0 0 chr13 73243357 73243393 -46501505 + AT_rich Low_complexity Low_complexity 1 36 0 192 40 0 0 chr13 73244723 73244748 -46500150 + (T)n Simple_repeat Simple_repeat 1 25 0 300 53 0 0 chr13 73245440 73245478 -46499420 + (CA)n Simple_repeat Simple_repeat 2 39 0 219 88 0 0 chr13 73245492 73245526 -46499372 + (TA)n Simple_repeat Simple_repeat 1 34 0 2736 83 5 3 chr13 73246871 73247255 -46497643 - L1PA13 LINE L1 -14 6149 5765 248 286 87 40 chr13 73248067 73248193 -46496705 - MIR SINE MIR -8 254 123 1883 146 3 0 chr13 73249495 73249789 -46495109 + LTR39 LTR ERV1 20 314 -469 2665 120 12 0 chr13 73249789 73250190 -46494708 - MER57B LTR ERV1 -3 431 26 323 164 0 0 chr13 73250193 73250248 -46494650 - MER57B LTR ERV1 -379 55 1 * 2668 190 32 0 chr13 73250248 73250709 -46494189 + LTR39 LTR ERV1 308 783 0 24 0 0 0 chr13 73251540 73251564 -46493334 + AT_rich Low_complexity Low_complexity 1 24 0 2431 114 39 5 chr13 73251782 73252167 -46492731 - MER48 LTR ERV1 0 398 1 258 318 100 22 chr13 73255160 73255340 -46489558 - MIR3 SINE MIR -62 146 2 196 257 55 73 chr13 73256412 73256521 -46488377 + L2 LINE L2 3166 3272 0 342 168 0 32 chr13 73258103 73258174 -46486724 + MIR SINE MIR 79 146 -62 490 290 101 0 chr13 73258595 73258733 -46486165 + MIR SINE MIR 81 232 -30 2345 100 0 0 chr13 73259861 73260160 -46484738 + AluSc SINE Alu 1 299 -10 642 247 148 0 chr13 73260455 73260617 -46484281 + MER5A DNA MER1_type 4 189 0 25 0 0 0 chr13 73261159 73261184 -46483714 + AT_rich Low_complexity Low_complexity 1 25 0 681 224 144 0 chr13 73262119 73262293 -46482605 - MIR SINE MIR -29 233 35 218 196 59 0 chr13 73262357 73262408 -46482490 - MIR SINE MIR -62 200 147 722 188 8 0 chr13 73262419 73262547 -46482351 + MSTC LTR MaLR 3 131 -297 573 264 174 6 chr13 73262547 73262725 -46482173 + MIR SINE MIR 38 245 -17 1458 186 13 13 chr13 73263490 73263796 -46481102 + L1MD3 LINE L1 7674 7979 -16 340 217 19 0 chr13 73263802 73263884 -46481014 + FLAM_A SINE Alu 4 65 -68 5658 103 22 19 chr13 73264332 73265415 -46479483 - L1PA11 LINE L1 -7 6167 5040 1424 118 52 0 chr13 73266069 73266280 -46478618 + MER30 DNA MER1_type 9 230 0 838 161 18 42 chr13 73266372 73266540 -46478358 + L1PB4 LINE L1 5988 6151 -5 550 351 27 14 chr13 73267402 73267624 -46477274 - MIR SINE MIR -12 250 26 354 231 33 137 chr13 73267799 73268011 -46476887 + MIR SINE MIR 14 203 -59 198 293 0 0 chr13 73268699 73268740 -46476158 + L2 LINE L2 3216 3256 -16 207 311 0 0 chr13 73269449 73269510 -46475388 + L2 LINE L2 2779 2839 -475 431 340 13 0 chr13 73269591 73269750 -46475148 + MIR3 SINE MIR 45 205 -3 1844 162 0 7 chr13 73270454 73270756 -46474142 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr13 73271112 73271133 -46473765 + AT_rich Low_complexity Low_complexity 1 21 0 185 301 122 57 chr13 73272103 73272226 -46472672 + L3 LINE CR1 1447 1577 0 204 40 0 0 chr13 73273352 73273377 -46471521 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1020 159 37 0 chr13 73274345 73274534 -46470364 + MER20 DNA MER1_type 24 219 0 23 33 0 0 chr13 73278067 73278097 -46466801 + AT_rich Low_complexity Low_complexity 1 30 0 252 167 0 0 chr13 73281404 73281452 -46463446 + (TA)n Simple_repeat Simple_repeat 1 48 0 4498 35 0 4 chr13 73281761 73282301 -46462597 - L1PA4 LINE L1 0 6155 5618 3432 20 0 0 chr13 73282301 73282932 -46461966 + L1PA4 LINE L1 4989 5619 -536 2197 167 129 18 chr13 73282954 73283402 -46461496 + MLT1D LTR MaLR 8 505 0 1290 113 134 28 chr13 73284165 73284412 -46460486 + MER1B DNA MER1_type 4 276 -63 351 340 99 0 chr13 73284495 73284657 -46460241 + MIR SINE MIR 79 256 -6 213 121 0 0 chr13 73285066 73285099 -46459799 + (TA)n Simple_repeat Simple_repeat 1 33 0 480 263 21 72 chr13 73287357 73287593 -46457305 + L2 LINE L2 3073 3296 -17 2282 235 60 39 chr13 73287725 73288512 -46456386 - L1MC4 LINE L1 -5 8037 7235 27 29 0 0 chr13 73288802 73288836 -46456062 + AT_rich Low_complexity Low_complexity 1 34 0 32 0 0 0 chr13 73289133 73289165 -46455733 + AT_rich Low_complexity Low_complexity 1 32 0 644 227 76 17 chr13 73289274 73289446 -46455452 + MIR SINE MIR 58 239 -23 2808 185 29 37 chr13 73289483 73289870 -46455028 - MER68 LTR ERV1 -6 556 174 1992 120 13 32 chr13 73289870 73290179 -46454719 - AluSx SINE Alu -9 303 1 2808 185 29 37 chr13 73290179 73290352 -46454546 - MER68 LTR ERV1 -388 174 1 403 222 0 0 chr13 73290762 73290834 -46454064 - AluJ/FLAM SINE Alu -240 72 1 207 213 0 0 chr13 73291707 73291754 -46453144 + MIR3 SINE MIR 151 197 -11 1149 226 55 3 chr13 73293770 73294098 -46450800 + L1 LINE L1 2625 2969 -3177 480 263 23 0 chr13 73294092 73294225 -46450673 + L1 LINE L1 4055 4190 -1956 * 676 294 107 35 chr13 73294358 73294837 -46450061 - L1ME LINE L1 -386 5759 5247 21 36 0 0 chr13 73294941 73294969 -46449929 + AT_rich Low_complexity Low_complexity 1 28 0 231 306 27 9 chr13 73295037 73295148 -46449750 - L1ME LINE L1 -1095 5034 4922 1097 216 143 49 chr13 73295491 73295917 -46448981 - MLT1C LTR MaLR 0 467 2 572 285 49 23 chr13 73295949 73296254 -46448644 - L1ME LINE L1 -2048 4081 3769 437 274 177 37 chr13 73296436 73296764 -46448134 - L1ME LINE L1 -2924 3205 2832 401 234 103 34 chr13 73296842 73296945 -46447953 - L1ME LINE L1 -3784 2345 2224 230 0 0 32 chr13 73296945 73296976 -46447922 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 401 234 103 34 chr13 73296976 73297047 -46447851 - L1ME LINE L1 -3905 2224 2159 606 209 132 0 chr13 73297403 73297532 -46447366 - FAM SINE Alu -19 166 21 721 282 52 28 chr13 73297647 73298146 -46446752 - L1MEd LINE L1 -4640 1670 1117 9525 181 25 20 chr13 73298223 73298733 -46446165 - L1MA4A LINE L1 -5 7000 6494 312 27 0 0 chr13 73298733 73298770 -46446128 + (TG)n Simple_repeat Simple_repeat 2 38 0 9525 181 25 20 chr13 73298770 73301214 -46443684 - L1MA4A LINE L1 -511 6494 4029 7540 219 31 75 chr13 73301199 73303358 -46441540 - L1MA4A LINE L1 -4775 2074 11 * 392 349 111 35 chr13 73303388 73303703 -46441195 - LTR16C LTR ERVL -1 490 152 1250 326 40 48 chr13 73303750 73304545 -46440353 - ERVL LTR ERVL -1551 4213 3425 2558 103 3 14 chr13 73304579 73304938 -46439960 - THE1B LTR MaLR 0 364 10 550 359 34 17 chr13 73304987 73305282 -46439616 - ERVL LTR ERVL -2177 3308 3009 287 356 35 17 chr13 73305583 73305757 -46439141 - ERVL LTR ERVL -3052 2712 2536 783 353 79 24 chr13 73305808 73306821 -46438077 - ERVL LTR ERVL -3409 2245 1108 801 104 0 0 chr13 73306846 73306961 -46437937 - L1PA5 LINE L1 -4 6150 6036 326 83 0 0 chr13 73306978 73307026 -46437872 - MER45B DNA AcHobo -207 833 786 16507 38 1 1 chr13 73307026 73309814 -46435084 - L1PA5 LINE L1 0 6154 3369 566 212 0 8 chr13 73309861 73309979 -46434919 - FLAM_C SINE Alu -6 137 21 303 302 66 28 chr13 73310388 73310600 -46434298 - ERVL LTR ERVL -4865 620 401 2287 91 3 3 chr13 73310743 73311041 -46433857 - AluSc SINE Alu -11 298 1 282 339 23 59 chr13 73311367 73311588 -46433310 - LTR16C LTR ERVL -94 397 185 604 312 103 14 chr13 73311820 73312246 -46432652 - L1MEd LINE L1 -5287 832 369 24 0 0 0 chr13 73312493 73312517 -46432381 + AT_rich Low_complexity Low_complexity 1 24 0 214 361 131 42 chr13 73312581 73313132 -46431766 + L2 LINE L2 2297 2896 -418 194 197 136 106 chr13 73313320 73313386 -46431512 + L2 LINE L2 3201 3268 -4 288 277 5 53 chr13 73314283 73314503 -46430395 + L2 LINE L2 3046 3313 0 217 227 40 0 chr13 73314631 73314706 -46430192 + (TA)n Simple_repeat Simple_repeat 2 79 0 5257 136 16 45 chr13 73315869 73317376 -46427522 - L1PA15 LINE L1 -6 6159 4666 361 130 0 0 chr13 73317676 73317742 -46427156 - L1P5 LINE L1 -421 5730 5665 399 333 135 4 chr13 73318234 73318486 -46426412 + L2 LINE L2 1811 2095 -1219 1757 300 91 56 chr13 73318493 73318559 -46426339 + L2 LINE L2 1876 1938 -1375 1143 231 129 71 chr13 73318559 73319049 -46425849 + MLT2B1 LTR ERVL 1 518 -2 1757 300 91 56 chr13 73319049 73319942 -46424956 + L2 LINE L2 1938 2904 -409 2365 123 13 11 chr13 73319942 73320316 -46424582 - THE1C LTR MaLR 0 375 1 1757 300 91 56 chr13 73320316 73320727 -46424171 + L2 LINE L2 2904 3299 -14 376 97 153 0 chr13 73320727 73320799 -46424099 - L1PA16 LINE L1 0 6166 6084 182 107 0 0 chr13 73320800 73320828 -46424070 + L2 LINE L2 3284 3311 -2 2048 255 36 13 chr13 73320975 73321501 -46423397 + MLT1F LTR MaLR 3 540 -2 458 285 15 15 chr13 73321833 73321970 -46422928 + MIR SINE MIR 126 262 0 211 224 0 0 chr13 73322680 73322729 -46422169 + A-rich Low_complexity Low_complexity 1 49 0 1344 91 50 0 chr13 73323235 73323434 -46421464 + L1MA1 LINE L1 6090 6298 -4 238 158 0 0 chr13 73324595 73324633 -46420265 - THE1C LTR MaLR 0 428 391 2114 120 0 3 chr13 73324636 73324935 -46419963 + AluSx SINE Alu 1 298 -14 595 86 12 0 chr13 73324958 73325039 -46419859 - THE1C LTR MaLR -26 349 268 21 71 0 0 chr13 73325301 73325343 -46419555 + AT_rich Low_complexity Low_complexity 1 42 0 212 122 24 0 chr13 73325460 73325501 -46419397 + GA-rich Low_complexity Low_complexity 2 43 0 21 0 0 0 chr13 73326008 73326029 -46418869 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 73326489 73326526 -46418372 + AT_rich Low_complexity Low_complexity 1 37 0 600 257 93 33 chr13 73327186 73327400 -46417498 - MIR SINE MIR 0 262 36 294 29 0 0 chr13 73330401 73330436 -46414462 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 295 273 6 chr13 73330865 73331048 -46413850 - L3 LINE CR1 -1038 539 308 537 58 0 0 chr13 73331885 73331954 -46412944 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 334 273 45 0 chr13 73331991 73332079 -46412819 - MIR SINE MIR -16 246 155 215 327 86 56 chr13 73333065 73333227 -46411671 + L2 LINE L2 2871 3037 -235 * 320 296 37 19 chr13 73333225 73333333 -46411565 + L2 LINE L2 3204 3313 0 215 248 368 0 chr13 73334219 73334336 -46410562 - L2 LINE L2 0 3313 3154 23 33 0 0 chr13 73334587 73334617 -46410281 + AT_rich Low_complexity Low_complexity 1 30 0 219 361 83 0 chr13 73335107 73335215 -46409683 - L2 LINE L2 -35 3237 3121 707 316 58 51 chr13 73339480 73339891 -46405007 - LTR33 LTR ERVL -70 451 38 265 338 105 29 chr13 73340416 73340626 -46404272 - L2 LINE L2 -181 3091 2866 377 277 99 7 chr13 73340645 73340786 -46404112 - MIR SINE MIR -10 252 99 218 371 124 36 chr13 73340802 73341441 -46403457 - L2 LINE L2 -585 2729 2035 1744 176 20 0 chr13 73342297 73342592 -46402306 + AluJo SINE Alu 12 312 0 246 32 0 0 chr13 73342670 73342701 -46402197 + (GA)n Simple_repeat Simple_repeat 2 32 0 546 297 103 10 chr13 73342820 73343015 -46401883 + MIR SINE MIR 39 251 -11 22 0 0 0 chr13 73343540 73343562 -46401336 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 73343729 73343755 -46401143 + AT_rich Low_complexity Low_complexity 1 26 0 1524 45 5 10 chr13 73344862 73345060 -46399838 + L1PA7 LINE L1 5958 6154 0 180 83 62 21 chr13 73345791 73345839 -46399059 + (TTATG)n Simple_repeat Simple_repeat 3 52 0 183 196 98 39 chr13 73346130 73346181 -46398717 + L2 LINE L2 3205 3258 -14 23 0 0 0 chr13 73346228 73346251 -46398647 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr13 73346427 73346454 -46398444 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 73346667 73346698 -46398200 + AT_rich Low_complexity Low_complexity 1 31 0 43792 43 3 1 chr13 73346741 73352883 -46392015 - L1PA4 LINE L1 -3 6152 2 21 0 0 0 chr13 73353083 73353104 -46391794 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 73353545 73353573 -46391325 + AT_rich Low_complexity Low_complexity 1 28 0 2306 60 0 47 chr13 73354879 73355196 -46389702 + AluY SINE Alu 1 302 -9 2289 78 3 0 chr13 73355209 73355502 -46389396 + AluY SINE Alu 1 294 -17 373 194 0 22 chr13 73356430 73356506 -46388392 + MLT1I LTR MaLR 344 409 0 234 288 0 119 chr13 73357899 73357993 -46386905 - L2 LINE L2 -7 3306 3237 2131 98 7 3 chr13 73357993 73358289 -46386609 + AluSx SINE Alu 8 304 -8 234 288 0 119 chr13 73358289 73358354 -46386544 - L2 LINE L2 -76 3237 3166 219 36 0 0 chr13 73358757 73358785 -46386113 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 357 136 17 0 chr13 73358787 73358846 -46386052 - L2 LINE L2 -8 3305 3246 190 319 87 0 chr13 73358995 73359064 -46385834 - L2 LINE L2 -285 2987 2913 21 0 0 0 chr13 73359425 73359446 -46385452 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr13 73360808 73360851 -46384047 + AT_rich Low_complexity Low_complexity 1 43 0 252 0 0 0 chr13 73361926 73361954 -46382944 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 216 403 62 0 chr13 73363212 73363356 -46381542 + MIR SINE MIR 46 198 -64 430 303 202 5 chr13 73364598 73364796 -46380102 - MIR SINE MIR -16 246 10 21 36 0 0 chr13 73365046 73365074 -46379824 + AT_rich Low_complexity Low_complexity 1 28 0 201 283 80 80 chr13 73365648 73365786 -46379112 + MIR SINE MIR 30 167 -95 1124 153 0 103 chr13 73365948 73366171 -46378727 - AluJb SINE Alu -27 285 86 305 219 134 0 chr13 73366268 73366350 -46378548 - MIR SINE MIR -6 256 164 536 287 59 61 chr13 73366359 73366804 -46378094 + MLT1J2 LTR MaLR 3 450 0 356 286 10 0 chr13 73366809 73366907 -46377991 - MIR SINE MIR -111 151 53 27 0 0 0 chr13 73367128 73367155 -46377743 + AT_rich Low_complexity Low_complexity 1 27 0 218 310 85 31 chr13 73367226 73367355 -46377543 - MIR SINE MIR -125 137 2 270 0 0 0 chr13 73367388 73367418 -46377480 + (TG)n Simple_repeat Simple_repeat 2 31 0 460 306 206 9 chr13 73368042 73368261 -46376637 + MIR SINE MIR 1 262 0 2090 47 0 0 chr13 73368515 73368769 -46376129 - L1PA3 LINE L1 -3 6152 5899 482 17 0 0 chr13 73368769 73368828 -46376070 + L1P1 LINE L1 5715 5773 -382 1380 252 66 30 chr13 73369018 73369610 -46375288 + L1MC5 LINE L1 7314 7926 -35 23 0 0 0 chr13 73369662 73369685 -46375213 + AT_rich Low_complexity Low_complexity 1 23 0 1749 222 43 57 chr13 73370376 73370885 -46374013 - MLT1D LTR MaLR -3 502 1 209 373 0 0 chr13 73372288 73372355 -46372543 - MIR SINE MIR -156 106 40 248 331 199 0 chr13 73372466 73372617 -46372281 + L2 LINE L2 2578 2758 -556 197 326 68 32 chr13 73373037 73373227 -46371671 + L2 LINE L2 2731 2927 -387 183 245 61 0 chr13 73373471 73373520 -46371378 - MIR3 SINE MIR -22 186 135 2986 48 0 3 chr13 73374880 73375257 -46369641 + L1PA7 LINE L1 5774 6149 -5 196 348 45 81 chr13 73375435 73375745 -46369153 - L2 LINE L2 -40 3232 2934 645 342 33 8 chr13 73377057 73377300 -46367598 + MIR SINE MIR 14 262 0 26 30 0 0 chr13 73380612 73380645 -46364253 + AT_rich Low_complexity Low_complexity 1 33 0 2021 201 107 4 chr13 73382833 73383290 -46361608 + MLT1D LTR MaLR 1 504 -1 231 186 216 59 chr13 73384188 73384290 -46360608 + MIR SINE MIR 87 204 -58 257 372 6 71 chr13 73386237 73386420 -46358478 + MIR3 SINE MIR 36 206 -2 683 300 44 47 chr13 73388165 73388552 -46356346 - Charlie8 DNA MER1_type -2031 386 1 180 0 0 0 chr13 73388590 73388610 -46356288 + (TA)n Simple_repeat Simple_repeat 2 21 0 290 250 39 0 chr13 73388860 73388964 -46355934 + (TA)n Simple_repeat Simple_repeat 2 109 0 264 371 35 0 chr13 73389058 73389174 -46355724 + MIR3 SINE MIR 83 202 -6 291 296 112 0 chr13 73389793 73389891 -46355007 - MER5A DNA MER1_type -1 188 80 1558 169 31 96 chr13 73390196 73390378 -46354520 + MLT1B LTR MaLR 1 193 -197 1647 185 4 0 chr13 73390378 73390654 -46354244 + AluJb SINE Alu 5 281 -31 1558 169 31 96 chr13 73390654 73390886 -46354012 + MLT1B LTR MaLR 193 388 -2 251 322 28 78 chr13 73391280 73391460 -46353438 - MIR3 SINE MIR -2 206 36 274 253 218 6 chr13 73391742 73391916 -46352982 + MLT1H LTR MaLR 339 549 0 1293 278 150 44 chr13 73391916 73392949 -46351949 + HAL1 LINE L1 953 2095 -412 359 192 164 0 chr13 73393049 73393153 -46351745 + L2 LINE L2 3193 3313 0 421 217 100 113 chr13 73393385 73393625 -46351273 - L2 LINE L2 -2 3311 3075 326 333 22 0 chr13 73393735 73393825 -46351073 - MIR SINE MIR -169 93 2 288 306 56 0 chr13 73393850 73393958 -46350940 - MIR SINE MIR -4 258 145 400 204 55 4 chr13 73393967 73394075 -46350823 + MLT1H1 LTR MaLR 12 167 -382 * 436 238 171 42 chr13 73394063 73394256 -46350642 + MLT1H1 LTR MaLR 333 550 -5 601 254 21 101 chr13 73394572 73394716 -46350182 + MLT1F1 LTR MaLR 3 157 -433 1111 243 42 55 chr13 73394716 73395095 -46349803 + MLT1A2 LTR MaLR 1 374 0 601 254 21 101 chr13 73395095 73395342 -46349556 + MLT1F1 LTR MaLR 157 361 -229 2403 198 38 5 chr13 73395385 73395834 -46349064 + MER70B LTR ERVL 12 475 -103 244 256 256 0 chr13 73395884 73395974 -46348924 + MLT1F1 LTR MaLR 476 588 -7 303 304 54 9 chr13 73396678 73396790 -46348108 - MIR SINE MIR -60 202 86 2181 123 25 30 chr13 73400832 73401198 -46343700 + THE1C LTR MaLR 1 364 -11 1059 227 119 48 chr13 73401349 73401852 -46343046 - MER39 LTR ERV1 0 707 1 2115 141 0 0 chr13 73402114 73402418 -46342480 - AluSx SINE Alu -6 306 3 439 318 71 13 chr13 73402457 73402611 -46342287 - MIR3 SINE MIR -21 187 25 1652 204 78 45 chr13 73402788 73403277 -46341621 + MLT1D LTR MaLR 1 505 0 252 357 93 7 chr13 73403563 73403703 -46341195 - MER91A DNA MER1_type -20 176 25 390 195 0 0 chr13 73403735 73403822 -46341076 + GA-rich Low_complexity Low_complexity 2 88 0 6702 63 20 0 chr13 73403899 73405236 -46339662 + L1PA6 LINE L1 4801 6153 -1 238 275 46 0 chr13 73405770 73405879 -46339019 - L1ME4a LINE L1 -17 6104 5991 * 296 277 80 71 chr13 73405876 73406076 -46338822 - L1ME3 LINE L1 0 6170 5967 622 268 14 14 chr13 73406139 73406352 -46338546 - L1ME3 LINE L1 -214 5956 5744 318 308 70 42 chr13 73406642 73406682 -46338216 - L1ME3 LINE L1 -462 5659 5622 2813 3 0 0 chr13 73406682 73406983 -46337915 - AluYa5 SINE Alu -10 301 1 318 308 70 42 chr13 73406983 73407228 -46337670 - L1ME3 LINE L1 -499 5622 5366 2534 106 20 3 chr13 73407398 73407756 -46337142 - THE1B LTR MaLR 0 364 1 598 205 8 24 chr13 73408907 73409034 -46335864 + MER94 DNA DNA 10 134 0 3718 246 36 9 chr13 73409484 73410895 -46334003 + L1MB7 LINE L1 3830 5288 -858 1049 204 40 132 chr13 73410895 73410948 -46333950 - MLT1A1 LTR MaLR 0 365 309 547 103 0 0 chr13 73410948 73411026 -46333872 - MADE1 DNA Mariner 0 80 3 1049 204 40 132 chr13 73411026 73411374 -46333524 - MLT1A1 LTR MaLR -56 309 1 192 77 0 0 chr13 73411383 73411409 -46333489 + (A)n Simple_repeat Simple_repeat 1 26 0 3571 186 69 12 chr13 73411410 73412231 -46332667 + L1MB7 LINE L1 5298 6165 -19 342 348 48 22 chr13 73412594 73412824 -46332074 - L2 LINE L2 -516 2798 2563 257 203 27 0 chr13 73413167 73413241 -46331657 + (TA)n Simple_repeat Simple_repeat 1 76 0 2228 117 0 3 chr13 73413927 73414227 -46330671 + AluSg SINE Alu 3 301 -9 396 302 85 9 chr13 73415793 73415899 -46328999 - MER45 DNA AcHobo -1465 116 3 25 51 0 0 chr13 73417250 73417289 -46327609 + AT_rich Low_complexity Low_complexity 1 39 0 341 317 88 54 chr13 73417293 73417498 -46327400 - MIR SINE MIR -3 259 48 1981 199 33 47 chr13 73417655 73418305 -46326593 + L1ME1 LINE L1 4833 5467 -699 1860 252 75 7 chr13 73418339 73418886 -46326012 + L1ME1 LINE L1 5568 6151 -15 11650 177 23 43 chr13 73419024 73419105 -46325793 + L1PA16 LINE L1 2942 3023 -3143 1525 34 0 0 chr13 73419105 73419283 -46325615 - L1PA3 LINE L1 0 6155 5978 11650 177 23 43 chr13 73419283 73421706 -46323192 + L1PA16 LINE L1 3023 5431 -735 278 161 18 18 chr13 73421706 73421762 -46323136 + MER41B LTR ERV1 480 535 -100 11650 177 23 43 chr13 73421762 73422335 -46322563 + L1PA16 LINE L1 5431 6014 -152 3517 161 24 3 chr13 73421763 73422377 -46322521 + L1MA4 LINE L1 5423 6049 -251 * 737 181 0 0 chr13 73422389 73422516 -46322382 - AluJb SINE Alu -8 304 178 3390 94 11 0 chr13 73422516 73422971 -46321927 + THE1B-int LTR MaLR 1121 1580 0 2148 134 36 22 chr13 73422971 73423329 -46321569 + THE1B LTR MaLR 1 363 -1 7135 148 20 3 chr13 73423330 73424499 -46320399 - L1PBa LINE L1 -5671 1192 3 683 209 7 14 chr13 73424503 73424642 -46320256 - AluJo SINE Alu -170 142 5 936 218 48 4 chr13 73424642 73424890 -46320008 + L1MA4 LINE L1 6036 6294 -6 1048 226 91 36 chr13 73425800 73426165 -46318733 - MER57A LTR ERV1 0 403 41 2635 214 54 6 chr13 73427533 73428163 -46316735 - MER45B DNA AcHobo -44 996 337 1607 231 16 23 chr13 73428210 73428647 -46316251 + L1ME2 LINE L1 5718 6151 -13 395 313 84 13 chr13 73428663 73428890 -46316008 - L1M4 LINE L1 -1437 4709 4467 270 296 104 58 chr13 73429030 73429655 -46315243 - L1M4 LINE L1 -1846 4300 3647 342 298 188 12 chr13 73429779 73430098 -46314800 - L1M4 LINE L1 -2660 3486 3112 1903 240 39 27 chr13 73431024 73431537 -46313361 + LTR40a LTR ERVL 1 519 0 773 146 54 8 chr13 73432961 73433091 -46311807 + AluJo SINE Alu 2 137 -175 1759 203 101 115 chr13 73433485 73434433 -46310465 - LTR1B LTR ERV1 0 1020 1 2056 129 137 13 chr13 73435604 73435985 -46308913 - MSTA LTR MaLR 0 428 1 216 254 60 15 chr13 73436046 73436113 -46308785 + MIR SINE MIR 164 233 -29 207 225 0 0 chr13 73436120 73436160 -46308738 + (TTA)n Simple_repeat Simple_repeat 3 42 0 534 318 54 50 chr13 73436793 73437054 -46307844 + MIR SINE MIR 1 262 0 222 37 0 0 chr13 73437381 73437408 -46307490 + (CA)n Simple_repeat Simple_repeat 2 28 0 330 297 68 60 chr13 73437638 73437887 -46307011 - L1 LINE L1 -865 5281 5031 554 268 54 11 chr13 73437887 73438094 -46306804 - MER67A LTR ERV1 -2 541 295 230 245 29 49 chr13 73438076 73438178 -46306720 - MER67C LTR ERV1 -299 411 312 * 985 194 111 68 chr13 73438183 73438462 -46306436 - MSTD LTR MaLR 0 396 106 9328 93 3 7 chr13 73438501 73439818 -46305080 - L1P LINE L1 -1481 4665 3354 1390 164 13 102 chr13 73439947 73440120 -46304778 - AluJb SINE Alu -34 278 91 6760 53 30 0 chr13 73440120 73440986 -46303912 + L1PA5 LINE L1 5258 6149 -5 22 0 0 0 chr13 73440986 73441008 -46303890 + AT_rich Low_complexity Low_complexity 1 22 0 1390 164 13 102 chr13 73441008 73441117 -46303781 - AluJb SINE Alu -219 93 1 289 264 111 0 chr13 73442309 73442381 -46302517 + MER45 DNA AcHobo 1 80 -873 229 356 39 0 chr13 73443375 73443479 -46301419 + L2 LINE L2 2903 3010 -262 592 171 92 55 chr13 73443615 73443779 -46301119 + MER104 DNA Tc2 11 180 0 570 285 16 0 chr13 73443958 73444144 -46300754 + L1MD2 LINE L1 6170 6358 -1 23 33 0 0 chr13 73444190 73444220 -46300678 + AT_rich Low_complexity Low_complexity 1 30 0 284 67 0 79 chr13 73444230 73444319 -46300579 + (TA)n Simple_repeat Simple_repeat 1 82 0 279 140 0 0 chr13 73445952 73446002 -46298896 + (TG)n Simple_repeat Simple_repeat 2 51 0 37 23 0 0 chr13 73446800 73446844 -46298054 + AT_rich Low_complexity Low_complexity 1 44 0 2007 81 99 0 chr13 73447924 73448207 -46296691 - AluSp SINE Alu -2 311 1 254 250 16 0 chr13 73449700 73449764 -46295134 - L1MC5 LINE L1 -61 7900 7836 345 355 141 24 chr13 73449998 73450246 -46294652 - HAL1 LINE L1 -2121 386 110 13685 173 47 12 chr13 73450936 73454776 -46290122 - L1MA8 LINE L1 0 6355 2388 200 135 27 0 chr13 73455086 73455123 -46289775 + (TTG)n Simple_repeat Simple_repeat 2 39 0 235 335 7 66 chr13 73455132 73455284 -46289614 - L1MA8 LINE L1 -5991 150 8 229 169 77 77 chr13 73455308 73455373 -46289525 - LTR67 LTR ERVL -65 492 428 420 37 0 0 chr13 73456250 73456304 -46288594 + L1PA3 LINE L1 6099 6152 -3 40 37 0 0 chr13 73456304 73456358 -46288540 + AT_rich Low_complexity Low_complexity 1 54 0 366 341 49 0 chr13 73456368 73456532 -46288366 - MIR SINE MIR -52 210 39 500 274 41 20 chr13 73456658 73456804 -46288094 - L2 LINE L2 -4 3309 3161 204 224 45 0 chr13 73456813 73456880 -46288018 + (TA)n Simple_repeat Simple_repeat 1 70 0 2087 271 138 35 chr13 73456923 73457813 -46287085 - L2 LINE L2 -155 3158 2128 1550 176 61 18 chr13 73457813 73458091 -46286807 + AluJo SINE Alu 11 300 -12 2087 271 138 35 chr13 73458091 73458311 -46286587 - L2 LINE L2 -1185 2128 1932 3883 168 46 9 chr13 73458325 73459344 -46285554 + L1M2 LINE L1 4565 5608 -683 260 296 52 67 chr13 73459578 73459713 -46285185 + MIR3 SINE MIR 30 162 -46 620 212 0 29 chr13 73459928 73459996 -46284902 - MLT1D LTR MaLR 0 505 441 2179 100 27 7 chr13 73459996 73460297 -46284601 + AluSg SINE Alu 1 307 -3 620 212 0 29 chr13 73460297 73460365 -46284533 - MLT1D LTR MaLR -64 441 373 491 283 34 49 chr13 73460360 73460565 -46284333 - MLT1D LTR MaLR -288 217 16 * 3132 89 39 2 chr13 73460658 73461095 -46283803 + MLT2A2 LTR ERVL 1 453 0 407 268 127 28 chr13 73461100 73461313 -46283585 - MLT1J2 LTR MaLR -22 428 195 328 284 0 0 chr13 73461465 73461546 -46283352 + MLT1I LTR MaLR 63 143 -266 790 343 52 7 chr13 73461820 73462106 -46282792 + MLT1I LTR MaLR 91 389 -20 1341 217 123 3 chr13 73462433 73462783 -46282115 - MER63 DNA MER1_type 0 1062 671 495 121 30 61 chr13 73462810 73462909 -46281989 + MER2 DNA MER2_type 2 97 -248 24 0 0 0 chr13 73463815 73463839 -46281059 + AT_rich Low_complexity Low_complexity 1 24 0 2822 3 0 0 chr13 73463845 73464149 -46280749 + AluYa5 SINE Alu 1 304 -7 291 93 0 0 chr13 73464737 73464780 -46280118 + (TG)n Simple_repeat Simple_repeat 2 44 0 210 105 0 0 chr13 73464780 73464818 -46280080 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 73465294 73465317 -46279581 + AT_rich Low_complexity Low_complexity 1 23 0 247 280 149 0 chr13 73465317 73465424 -46279474 + MIR SINE MIR 103 225 -37 213 303 131 14 chr13 73466157 73466302 -46278596 - MIR SINE MIR -12 250 89 379 335 46 58 chr13 73466383 73466643 -46278255 + L2 LINE L2 2876 3132 -181 2174 115 77 6 chr13 73466954 73467292 -46277606 - THE1B LTR MaLR 0 364 3 227 200 0 0 chr13 73467303 73467348 -46277550 - MER116 DNA Mariner -32 48 4 1467 189 38 65 chr13 73468955 73469352 -46275546 + MLT1B LTR MaLR 5 390 0 294 278 176 19 chr13 73469682 73469790 -46275108 + MIR SINE MIR 17 141 -67 781 257 68 55 chr13 73469848 73470004 -46274894 + L1MC5 LINE L1 7381 7533 -428 1559 189 53 36 chr13 73470004 73470363 -46274535 + MLT1A1 LTR MaLR 1 365 0 781 257 68 55 chr13 73470363 73470404 -46274494 + L1MC5 LINE L1 7533 7572 -389 2660 138 9 30 chr13 73470404 73470839 -46274059 - MSTA LTR MaLR -2 426 1 781 257 68 55 chr13 73470839 73471166 -46273732 + L1MC5 LINE L1 7572 7913 -48 360 269 51 41 chr13 73471793 73471990 -46272908 - L1ME4a LINE L1 -15 6106 5908 252 268 37 12 chr13 73473519 73473601 -46271297 + HAL1b LINE L1 626 709 -639 1626 315 78 21 chr13 73473670 73474485 -46270413 + L2 LINE L2 2074 2935 -379 290 361 56 7 chr13 73474667 73474811 -46270087 + L2 LINE L2 3122 3272 0 1026 156 12 17 chr13 73474865 73475038 -46269860 + L1MA8 LINE L1 5617 5788 -503 231 191 118 0 chr13 73475008 73475076 -46269822 + L1MC4 LINE L1 6628 6703 -1339 * 300 227 0 13 chr13 73475096 73475171 -46269727 + L1MC4 LINE L1 6649 6722 -1320 254 213 0 13 chr13 73475172 73475247 -46269651 + (TA)n Simple_repeat Simple_repeat 2 75 0 2559 159 17 6 chr13 73475248 73475720 -46269178 + L1MA8 LINE L1 5786 6262 -29 497 317 74 48 chr13 73475726 73476146 -46268752 + L1ME LINE L1 3400 3830 -2316 316 226 32 43 chr13 73476153 73476246 -46268652 + L1ME LINE L1 3887 3978 -2168 1503 97 0 0 chr13 73476252 73476458 -46268440 - L1PA13 LINE L1 -1 6162 5957 1480 163 17 42 chr13 73476562 73476850 -46268048 + AluSx SINE Alu 14 294 -18 267 273 86 34 chr13 73477035 73477313 -46267585 + L1ME LINE L1 4300 4593 -1553 472 300 53 18 chr13 73477356 73477526 -46267372 + MIR SINE MIR 84 259 -3 796 215 60 5 chr13 73477553 73477753 -46267145 - MER58C DNA MER1_type 0 215 5 252 267 206 7 chr13 73477768 73477914 -46266984 + L1ME LINE L1 5382 5556 -565 441 267 15 7 chr13 73477948 73478083 -46266815 + L1ME LINE L1 5689 5824 -297 2206 129 0 0 chr13 73480959 73481262 -46263636 + AluSx SINE Alu 1 303 -9 185 219 0 16 chr13 73481588 73481652 -46263246 + CT-rich Low_complexity Low_complexity 2 64 0 209 219 0 0 chr13 73481735 73481776 -46263122 + MIR SINE MIR 212 252 -10 303 206 0 0 chr13 73482396 73482469 -46262429 + L1PB4 LINE L1 6084 6156 0 28 0 0 0 chr13 73482927 73482955 -46261943 + AT_rich Low_complexity Low_complexity 1 28 0 2187 182 33 63 chr13 73483236 73483630 -46261268 + MLT1D LTR MaLR 1 377 -128 2436 124 19 11 chr13 73483630 73484002 -46260896 - THE1C LTR MaLR 0 375 1 2187 182 33 63 chr13 73484002 73484128 -46260770 + MLT1D LTR MaLR 377 505 0 1649 178 10 24 chr13 73487305 73487603 -46257295 - AluJb SINE Alu -13 299 6 626 279 55 0 chr13 73487992 73488193 -46256705 - MIR SINE MIR -49 213 2 23 0 0 0 chr13 73488613 73488636 -46256262 + AT_rich Low_complexity Low_complexity 1 23 0 655 87 0 0 chr13 73489746 73489838 -46255060 - L1P LINE L1 -1471 4675 4584 2561 45 0 10 chr13 73489904 73490218 -46254680 + AluY SINE Alu 1 311 0 353 62 42 0 chr13 73490521 73490569 -46254329 - Alu SINE Alu -10 291 242 297 0 0 0 chr13 73491473 73491506 -46253392 + (CA)n Simple_repeat Simple_repeat 2 34 0 34 0 0 0 chr13 73492829 73492863 -46252035 + AT_rich Low_complexity Low_complexity 1 34 0 391 122 81 0 chr13 73493972 73494046 -46250852 - MADE1 DNA Mariner 0 80 1 222 328 45 0 chr13 73494406 73494473 -46250425 + L2 LINE L2 3193 3262 -10 553 296 185 31 chr13 73495138 73495490 -46249408 - HAL1 LINE L1 -606 1901 1496 960 214 78 69 chr13 73495490 73496032 -46248866 - MER39 LTR ERV1 0 643 25 323 250 274 6 chr13 73496086 73496254 -46248644 - HAL1 LINE L1 -1015 1492 1280 181 266 64 75 chr13 73500228 73500322 -46244576 + L2 LINE L2 2992 3084 -188 26 64 0 0 chr13 73501196 73501243 -46243655 + AT_rich Low_complexity Low_complexity 1 47 0 192 77 0 0 chr13 73501800 73501826 -46243072 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 236 239 0 0 chr13 73505220 73505266 -46239632 + L2 LINE L2 3217 3262 -10 553 264 128 54 chr13 73505304 73505546 -46239352 + Zaphod DNA AcHobo 36 295 -3736 1428 239 75 24 chr13 73505584 73506128 -46238770 + Zaphod DNA AcHobo 382 953 -3078 791 66 141 0 chr13 73507974 73508095 -46236803 - L1MA2 LINE L1 0 6304 6167 22 0 0 0 chr13 73508311 73508333 -46236565 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 73508548 73508569 -46236329 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr13 73510364 73510408 -46234490 + (TA)n Simple_repeat Simple_repeat 2 45 0 198 103 0 0 chr13 73510427 73510456 -46234442 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 504 282 168 39 chr13 73510477 73510921 -46233977 - L2 LINE L2 -50 3263 2730 1283 246 72 37 chr13 73512013 73512443 -46232455 - L2 LINE L2 0 3313 2869 192 77 0 0 chr13 73512531 73512557 -46232341 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 24 53 0 0 chr13 73514141 73514179 -46230719 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 73514330 73514352 -46230546 + AT_rich Low_complexity Low_complexity 1 22 0 220 243 42 146 chr13 73515108 73515252 -46229646 + MIR SINE MIR 56 184 -78 21 0 0 0 chr13 73515917 73515938 -46228960 + AT_rich Low_complexity Low_complexity 1 21 0 491 45 0 15 chr13 73516798 73516865 -46228033 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 305 91 0 18 chr13 73516874 73516929 -46227969 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 192 77 0 0 chr13 73517091 73517117 -46227781 + (TGG)n Simple_repeat Simple_repeat 1 26 0 258 239 0 0 chr13 73519510 73519581 -46225317 + (TA)n Simple_repeat Simple_repeat 2 72 0 831 256 63 15 chr13 73519712 73519981 -46224917 + L1MC4 LINE L1 7614 7895 -147 228 67 0 0 chr13 73519981 73520011 -46224887 + (CA)n Simple_repeat Simple_repeat 2 31 0 339 213 0 0 chr13 73520025 73520105 -46224793 + (TA)n Simple_repeat Simple_repeat 2 81 0 388 167 0 144 chr13 73520181 73520196 -46224702 + L1MC4 LINE L1 7903 7919 -123 225 0 0 0 chr13 73520196 73520221 -46224677 + (CA)n Simple_repeat Simple_repeat 2 26 0 388 167 0 144 chr13 73520221 73520337 -46224561 + L1MC4 LINE L1 7919 8015 -27 2073 101 3 10 chr13 73521518 73521806 -46223092 - AluSc SINE Alu -20 289 4 19438 65 2 6 chr13 73523165 73525823 -46219075 - L1P LINE L1 -1364 4782 2135 4981 149 44 44 chr13 73526042 73526123 -46218775 + L1MA8 LINE L1 5187 5266 -1025 2161 138 40 0 chr13 73526123 73526472 -46218426 + MER47A DNA MER2_type 1 363 -3 4981 149 44 44 chr13 73526472 73527314 -46217584 + L1MA8 LINE L1 5266 6115 -176 2078 132 13 10 chr13 73527314 73527625 -46217273 + AluSx SINE Alu 1 312 0 4981 149 44 44 chr13 73527625 73527801 -46217097 + L1MA8 LINE L1 6115 6289 -2 543 303 74 20 chr13 73527928 73528172 -46216726 + MLT1L LTR MaLR 308 564 -51 25 65 0 0 chr13 73528247 73528293 -46216605 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr13 73530324 73530346 -46214552 + AT_rich Low_complexity Low_complexity 1 22 0 1200 150 5 14 chr13 73530727 73530934 -46213964 - AluJo SINE Alu -23 289 85 27 62 0 0 chr13 73531893 73531941 -46212957 + AT_rich Low_complexity Low_complexity 1 48 0 1851 100 89 4 chr13 73532136 73532407 -46212491 - AluSq SINE Alu -14 299 6 264 269 41 88 chr13 73532420 73532591 -46212307 + MIR SINE MIR 100 262 0 285 235 259 0 chr13 73533025 73533110 -46211788 - MIR SINE MIR -117 145 39 383 284 52 0 chr13 73533489 73533605 -46211293 - L2 LINE L2 -4 3309 3188 182 36 0 36 chr13 73534832 73534841 -46210057 + (GA)n Simple_repeat Simple_repeat 2 10 -18 1881 157 3 0 chr13 73534841 73535140 -46209758 + AluSx SINE Alu 1 300 -12 182 36 0 36 chr13 73535140 73535158 -46209740 + (GA)n Simple_repeat Simple_repeat 10 28 0 1134 267 127 38 chr13 73535175 73535626 -46209272 - MLT1G1 LTR MaLR 0 595 95 2029 219 37 58 chr13 73535626 73536192 -46208706 + MLT2B3 LTR ERVL 1 554 0 1134 267 127 38 chr13 73536192 73536235 -46208663 - MLT1G1 LTR MaLR -500 95 57 1279 333 121 26 chr13 73537570 73538611 -46206287 + L2 LINE L2 1419 2558 -756 22 35 0 0 chr13 73538708 73538737 -46206161 + AT_rich Low_complexity Low_complexity 1 29 0 348 163 22 22 chr13 73539128 73539220 -46205678 + GA-rich Low_complexity Low_complexity 3 94 0 903 270 102 44 chr13 73540193 73540623 -46204275 + LTR16A1 LTR ERVL 3 457 0 679 328 87 13 chr13 73540623 73541001 -46203897 + HERV16 LTR ERVL 1 406 -4590 2555 333 59 53 chr13 73541077 73541154 -46203744 + ERVL LTR ERVL 2738 2813 -2951 2596 36 7 0 chr13 73541154 73541459 -46203439 - AluY SINE Alu -4 307 1 2555 333 59 53 chr13 73541459 73542952 -46201946 + ERVL LTR ERVL 2813 4317 -1447 14283 179 45 27 chr13 73543084 73545740 -46199158 + L1M1 LINE L1 2754 5528 -2037 1902 144 58 22 chr13 73545740 73546102 -46198796 + THE1C LTR MaLR 1 375 0 14283 179 45 27 chr13 73546102 73547236 -46197662 + L1M1 LINE L1 5528 6640 -925 230 335 115 28 chr13 73547584 73547802 -46197096 - L2 LINE L2 -197 3075 2839 275 177 16 0 chr13 73549188 73549250 -46195648 + GA-rich Low_complexity Low_complexity 2 64 0 453 276 87 41 chr13 73551036 73551232 -46193666 + L2 LINE L2 3109 3313 0 2297 108 23 2 chr13 73552909 73553345 -46191553 - L1P4 LINE L1 -568 5595 5154 229 146 0 36 chr13 73554491 73554546 -46190352 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 387 292 118 15 chr13 73554766 73554961 -46189937 - LTR33 LTR ERVL 0 521 307 317 340 16 52 chr13 73555048 73555242 -46189656 - LTR33 LTR ERVL -334 187 1 256 320 8 16 chr13 73555389 73555517 -46189381 + (CATA)n Simple_repeat Simple_repeat 4 130 0 1639 207 44 11 chr13 73555793 73556156 -46188742 + THE1C LTR MaLR 1 375 0 8941 122 36 9 chr13 73556158 73557525 -46187373 + THE1C-int LTR MaLR 3 1405 -175 1920 145 6 22 chr13 73557527 73557851 -46187047 + THE1C LTR MaLR 57 375 0 936 257 115 38 chr13 73557951 73558317 -46186581 - MSTD LTR MaLR -2 394 1 1682 158 78 72 chr13 73559127 73559468 -46185430 + Charlie1b DNA MER1_type 35 381 -2380 7030 142 24 11 chr13 73559468 73560682 -46184216 + Tigger3b DNA MER2_type 2 1231 0 1682 158 78 72 chr13 73560682 73560826 -46184072 + Charlie1b DNA MER1_type 381 523 0 396 262 87 40 chr13 73561688 73561837 -46183061 - MIR SINE MIR -35 227 72 22 35 0 0 chr13 73561837 73561866 -46183032 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 73562607 73562645 -46182253 + AT_rich Low_complexity Low_complexity 1 38 0 840 264 35 16 chr13 73562764 73563018 -46181880 + MIR SINE MIR 2 260 -2 191 353 153 7 chr13 73563275 73563425 -46181473 - L2 LINE L2 -602 2712 2541 3136 173 15 58 chr13 73563486 73563840 -46181058 + L1MB7 LINE L1 5482 5789 -395 1846 155 4 4 chr13 73563840 73564118 -46180780 - AluJb SINE Alu -24 288 11 3136 173 15 58 chr13 73564118 73564498 -46180400 + L1MB7 LINE L1 5789 6184 0 251 308 22 11 chr13 73566756 73566847 -46178051 + L2 LINE L2 3179 3270 -2 26 0 0 0 chr13 73567884 73567910 -46176988 + AT_rich Low_complexity Low_complexity 1 26 0 198 103 0 0 chr13 73569298 73569327 -46175571 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2150 124 24 37 chr13 73569426 73569806 -46175092 + THE1C LTR MaLR 1 375 0 245 242 137 32 chr13 73569972 73570067 -46174831 - L2 LINE L2 -19 3294 3190 237 262 204 10 chr13 73570208 73570311 -46174587 - L2 LINE L2 0 3272 3150 6779 33 4 0 chr13 73570705 73571513 -46173385 - L1PA5 LINE L1 -1 6153 5343 252 300 107 27 chr13 73572981 73573131 -46171767 - MER5A DNA MER1_type 0 189 28 705 221 93 12 chr13 73573180 73573352 -46171546 + MER5A DNA MER1_type 1 186 -3 773 149 0 52 chr13 73573417 73573551 -46171347 + FLAM_C SINE Alu 3 129 -4 420 285 43 39 chr13 73573578 73573733 -46171165 - MIR SINE MIR -63 145 4 1047 289 57 31 chr13 73578383 73579020 -46165878 - L2 LINE L2 -3 3310 2606 317 307 174 6 chr13 73579240 73579425 -46165473 - MIR SINE MIR -46 216 4 274 262 156 21 chr13 73580363 73580504 -46164394 - MIR SINE MIR -6 256 97 262 246 29 14 chr13 73581683 73581752 -46163146 + CT-rich Low_complexity Low_complexity 4 73 0 288 263 62 0 chr13 73582078 73582158 -46162740 + MIR3 SINE MIR 113 197 -11 448 273 53 110 chr13 73585532 73585796 -46159102 + MIR SINE MIR 8 256 -6 277 250 69 69 chr13 73586508 73586624 -46158274 - L2 LINE L2 -1 3312 3197 214 276 52 0 chr13 73587758 73587816 -46157082 + MIR SINE MIR 78 138 -70 201 74 0 0 chr13 73589576 73589603 -46155295 + (T)n Simple_repeat Simple_repeat 1 27 0 1574 179 0 28 chr13 73590794 73591079 -46153819 + AluJo SINE Alu 17 293 -19 223 297 0 93 chr13 73591350 73591468 -46153430 + L2 LINE L2 3195 3301 -12 1699 150 0 25 chr13 73591668 73591948 -46152950 - AluJo SINE Alu -3 309 37 686 242 118 0 chr13 73593617 73593795 -46151103 + MIR SINE MIR 35 233 -29 357 174 0 0 chr13 73594788 73594857 -46150041 + CT-rich Low_complexity Low_complexity 3 71 0 2009 159 12 3 chr13 73595949 73596289 -46148609 + MER2 DNA MER2_type 1 343 -1 482 259 141 41 chr13 73597834 73598054 -46146844 - L2 LINE L2 0 3313 3072 478 220 18 134 chr13 73598093 73598181 -46146717 - L2 LINE L2 -3110 204 107 2159 103 17 3 chr13 73598181 73598473 -46146425 + AluSc SINE Alu 1 296 -13 478 220 18 134 chr13 73598473 73598607 -46146291 - L2 LINE L2 -3207 107 8 302 122 0 20 chr13 73599232 73599281 -46145617 + MIR SINE MIR 215 262 0 2096 130 3 0 chr13 73600858 73601157 -46143741 - AluSx SINE Alu -12 300 1 257 212 13 28 chr13 73601852 73601930 -46142968 + MIR SINE MIR 71 148 -60 2307 107 0 0 chr13 73603956 73604256 -46140642 - AluSx SINE Alu -12 300 1 2667 99 11 11 chr13 73604285 73604660 -46140238 - THE1C LTR MaLR 0 375 1 216 258 220 29 chr13 73607700 73607856 -46137042 + MIR SINE MIR 19 206 -56 256 208 0 21 chr13 73608733 73608781 -46136117 + L2 LINE L2 3255 3301 -12 208 300 45 36 chr13 73609550 73609660 -46135238 + MIR SINE MIR 103 213 -49 201 180 0 0 chr13 73609837 73609887 -46135011 + (TA)n Simple_repeat Simple_repeat 1 50 0 242 237 0 0 chr13 73610154 73610213 -46134685 + MER116 DNA Mariner 16 74 -6 409 301 75 128 chr13 73610430 73610736 -46134162 + L2 LINE L2 2951 3240 -32 23 0 0 0 chr13 73611025 73611048 -46133850 + AT_rich Low_complexity Low_complexity 1 23 0 468 116 116 54 chr13 73611048 73611082 -46133816 - L1MA5A LINE L1 -10 6287 6257 1710 148 74 47 chr13 73611082 73611447 -46133451 - THE1C LTR MaLR 0 375 1 468 116 116 54 chr13 73611447 73611524 -46133374 - L1MA5A LINE L1 -40 6257 6169 734 191 0 0 chr13 73611571 73611686 -46133212 - FLAM_A SINE Alu -18 115 1 25 0 0 0 chr13 73611785 73611810 -46133088 + AT_rich Low_complexity Low_complexity 1 25 0 515 224 69 0 chr13 73611811 73611927 -46132971 - FLAM_C SINE Alu -19 124 1 214 285 15 92 chr13 73613371 73613501 -46131397 + MIR SINE MIR 117 236 -26 1323 249 131 30 chr13 73613850 73614417 -46130481 - MLT2F LTR ERVL 0 663 40 2416 99 5 26 chr13 73614650 73615034 -46129864 + L1PB1 LINE L1 5768 6143 -8 2688 29 0 0 chr13 73615693 73616001 -46128897 - AluY SINE Alu -3 308 1 252 295 98 36 chr13 73618060 73618172 -46126726 - MIR SINE MIR -67 141 23 2320 101 0 0 chr13 73619106 73619403 -46125495 - AluSx SINE Alu -15 297 1 352 383 84 11 chr13 73621614 73621888 -46123010 - L3 LINE CR1 -6 1571 1278 325 385 112 27 chr13 73622352 73622690 -46122208 - L2 LINE L2 -1 3271 2905 868 187 22 70 chr13 73623480 73623710 -46121188 - MER20 DNA MER1_type 0 219 1 24 0 0 0 chr13 73624923 73624947 -46119951 + AT_rich Low_complexity Low_complexity 1 24 0 261 364 104 0 chr13 73625674 73625828 -46119070 - L2 LINE L2 -1 3271 3102 932 30 67 0 chr13 73626005 73626169 -46118729 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 325 294 155 39 chr13 73626296 73626410 -46118488 + L2 LINE L2 1864 1963 -1351 270 0 0 0 chr13 73626410 73626440 -46118458 + (TG)n Simple_repeat Simple_repeat 1 30 0 325 294 155 39 chr13 73626440 73626713 -46118185 + L2 LINE L2 1963 2296 -1018 23 0 0 0 chr13 73626974 73626997 -46117901 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 73627355 73627378 -46117520 + (A)n Simple_repeat Simple_repeat 1 23 0 203 152 0 0 chr13 73627389 73627422 -46117476 + (CA)n Simple_repeat Simple_repeat 2 34 0 254 222 79 0 chr13 73627429 73627492 -46117406 - MIR SINE MIR -106 156 89 521 335 29 10 chr13 73628233 73628478 -46116420 - MIR SINE MIR -6 256 6 226 238 32 0 chr13 73628868 73628931 -46115967 + MIR SINE MIR 88 152 -110 322 155 28 0 chr13 73629075 73629146 -46115752 + MADE1 DNA Mariner 4 76 -4 2532 105 25 3 chr13 73629150 73629513 -46115385 - THE1C LTR MaLR -4 371 1 998 185 0 0 chr13 73629583 73629745 -46115153 + FRAM SINE Alu 1 162 -4 323 311 61 18 chr13 73630651 73630815 -46114083 - MIR SINE MIR -10 252 82 2718 128 0 11 chr13 73631475 73631913 -46112985 + L1PB4 LINE L1 5615 6047 -109 1830 111 8 4 chr13 73631915 73632167 -46112731 - AluSx SINE Alu -19 293 41 1022 97 14 14 chr13 73632296 73632441 -46112457 + AluSg/x SINE Alu 157 301 -11 251 309 25 0 chr13 73633151 73633232 -46111666 + L2 LINE L2 3231 3313 0 2129 132 10 0 chr13 73633958 73634332 -46110566 - AluSp SINE Alu 0 377 1 191 167 0 0 chr13 73634858 73634888 -46110010 + L2 LINE L2 3266 3295 -18 249 33 0 0 chr13 73634889 73634919 -46109979 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 1822 164 122 15 chr13 73635110 73635351 -46109547 - MLT1C LTR MaLR -14 453 239 252 0 0 0 chr13 73635351 73635379 -46109519 + (TG)n Simple_repeat Simple_repeat 2 29 0 1822 164 122 15 chr13 73635379 73635546 -46109352 - MLT1C LTR MaLR -228 239 1 1281 195 107 70 chr13 73636661 73637179 -46107719 - LTR1B LTR ERV1 -15 1005 342 2274 133 26 0 chr13 73637400 73637790 -46107108 + L1MA3 LINE L1 5906 6305 0 2076 111 9 25 chr13 73637796 73638112 -46106786 + AluY SINE Alu 1 311 0 2060 119 46 32 chr13 73638230 73638600 -46106298 - THE1C LTR MaLR 0 375 1 362 306 111 7 chr13 73638839 73638983 -46105915 - MIR3 SINE MIR -2 206 48 455 293 47 13 chr13 73639118 73639268 -46105630 - MIR SINE MIR -62 200 46 847 262 46 17 chr13 73639974 73640211 -46104687 + MIR SINE MIR 14 257 -5 249 360 0 0 chr13 73640220 73640295 -46104603 + MIR3 SINE MIR 81 155 -53 400 308 144 19 chr13 73640529 73640737 -46104161 + MIR SINE MIR 14 247 -15 25 0 0 0 chr13 73640978 73641003 -46103895 + AT_rich Low_complexity Low_complexity 1 25 0 2619 52 3 0 chr13 73641333 73641639 -46103259 + AluY SINE Alu 1 307 -4 27 49 0 0 chr13 73642155 73642196 -46102702 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr13 73642249 73642273 -46102625 + AT_rich Low_complexity Low_complexity 1 24 0 304 272 70 55 chr13 73642316 73642545 -46102353 + L1M4 LINE L1 4456 4691 -1455 2281 85 3 41 chr13 73642545 73642861 -46102037 + AluSq SINE Alu 1 304 -9 304 272 70 55 chr13 73642861 73642888 -46102010 + L1M4 LINE L1 4691 4716 -1430 255 241 0 25 chr13 73642892 73642971 -46101927 + GA-rich Low_complexity Low_complexity 2 78 0 483 351 69 35 chr13 73643028 73643461 -46101437 + L1M4 LINE L1 4769 5216 -930 296 253 13 38 chr13 73644032 73644111 -46100787 + MIR SINE MIR 184 260 -2 480 323 24 0 chr13 73645721 73645845 -46099053 + MIR3 SINE MIR 73 199 -9 212 305 114 29 chr13 73645973 73646078 -46098820 - MIR3 SINE MIR -93 115 2 1766 238 22 24 chr13 73646502 73646965 -46097933 - LTR40b LTR ERVL 0 462 1 638 279 56 14 chr13 73647225 73647440 -46097458 + MIR SINE MIR 9 232 -30 194 235 59 20 chr13 73647413 73647464 -46097434 + L2 LINE L2 3251 3303 -10 * 21 0 0 0 chr13 73647860 73647881 -46097017 + AT_rich Low_complexity Low_complexity 1 21 0 238 333 16 0 chr13 73651680 73651743 -46093155 - MIR SINE MIR -95 113 50 346 331 55 11 chr13 73651798 73651979 -46092919 - MIR SINE MIR -43 219 31 2061 132 35 51 chr13 73652167 73652537 -46092361 + THE1B LTR MaLR 1 364 0 342 265 165 29 chr13 73652702 73652872 -46092026 - MIR SINE MIR -42 220 28 25 31 0 0 chr13 73653430 73653462 -46091436 + AT_rich Low_complexity Low_complexity 1 32 0 968 173 120 0 chr13 73653908 73654099 -46090799 - AluJo SINE Alu 0 312 99 369 43 0 0 chr13 73655615 73655662 -46089236 + (CA)n Simple_repeat Simple_repeat 2 48 0 1014 187 42 115 chr13 73656096 73656241 -46088657 + MLT1A2 LTR MaLR 3 157 -217 2315 108 0 0 chr13 73656241 73656536 -46088362 - AluSx SINE Alu -17 295 1 1014 187 42 115 chr13 73656536 73656791 -46088107 + MLT1A2 LTR MaLR 157 374 0 1764 156 0 17 chr13 73657404 73657693 -46087205 + AluJb SINE Alu 23 306 -6 315 0 0 0 chr13 73658098 73658133 -46086765 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 299 13 26 chr13 73658988 73659065 -46085833 - L2 LINE L2 -369 2903 2828 22 56 0 0 chr13 73659895 73659931 -46084967 + AT_rich Low_complexity Low_complexity 1 36 0 438 387 60 19 chr13 73659947 73660311 -46084587 - L2 LINE L2 -1365 1949 1571 394 274 85 73 chr13 73660910 73661053 -46083845 + MLT1I LTR MaLR 89 229 -180 2300 105 0 19 chr13 73661053 73661367 -46083531 + AluSx SINE Alu 1 308 -4 394 274 85 73 chr13 73661367 73661540 -46083358 + MLT1I LTR MaLR 229 409 0 318 26 0 0 chr13 73662014 73662053 -46082845 + (CA)n Simple_repeat Simple_repeat 2 40 0 2171 98 0 10 chr13 73662242 73662538 -46082360 - AluSx SINE Alu -19 293 1 262 280 27 13 chr13 73662560 73662635 -46082263 + L2 LINE L2 3196 3271 -1 399 320 55 0 chr13 73663597 73663725 -46081173 - MIR SINE MIR -108 154 20 22 35 0 0 chr13 73665002 73665031 -46079867 + AT_rich Low_complexity Low_complexity 1 29 0 716 339 24 0 chr13 73665245 73665493 -46079405 + MIR SINE MIR 2 255 -7 2297 126 0 0 chr13 73665545 73665854 -46079044 - AluSx SINE Alu -3 309 1 230 198 104 52 chr13 73666795 73666891 -46078007 + MIR SINE MIR 112 212 -50 196 358 37 45 chr13 73666954 73667088 -46077810 - L2 LINE L2 0 3272 3140 2297 129 13 24 chr13 73667661 73668040 -46076858 - THE1C LTR MaLR 0 375 1 224 250 213 12 chr13 73668190 73668276 -46076622 - MIR SINE MIR -103 105 5 233 349 47 0 chr13 73669499 73669585 -46075313 + MIR SINE MIR 64 153 -109 204 158 0 0 chr13 73669930 73669968 -46074930 + A-rich Low_complexity Low_complexity 1 38 0 1407 169 26 19 chr13 73670062 73670329 -46074569 - AluJo SINE Alu -1 311 43 283 295 0 0 chr13 73670466 73670551 -46074347 - MIR SINE MIR -47 161 76 279 192 0 0 chr13 73672008 73672060 -46072838 - L2 LINE L2 -6 3307 3256 1926 119 36 7 chr13 73672199 73672476 -46072422 + AluSc SINE Alu 3 287 -22 228 253 46 35 chr13 73672515 73672602 -46072296 + (CAGAGA)n Simple_repeat Simple_repeat 6 93 0 3381 132 30 86 chr13 73672826 73672959 -46071939 + L1MB4 LINE L1 5337 5476 -704 270 81 0 0 chr13 73672959 73672996 -46071902 + (TA)n Simple_repeat Simple_repeat 2 38 0 3381 132 30 86 chr13 73672996 73673685 -46071213 + L1MB4 LINE L1 5476 6110 -70 218 323 21 43 chr13 73674026 73674119 -46070779 - L2 LINE L2 -1 3312 3222 1902 177 25 33 chr13 73674175 73674543 -46070355 + MLT1A1 LTR MaLR 1 365 0 1798 184 3 0 chr13 73674622 73674910 -46069988 + AluJb SINE Alu 1 289 -23 26 30 0 0 chr13 73674913 73674946 -46069952 + AT_rich Low_complexity Low_complexity 1 33 0 282 266 0 0 chr13 73675132 73675196 -46069702 - MIR SINE MIR -42 220 157 261 257 0 57 chr13 73675560 73675630 -46069268 - L2 LINE L2 0 3272 3207 206 428 38 15 chr13 73675825 73675956 -46068942 - L2 LINE L2 -36 3236 3103 1180 248 37 29 chr13 73676116 73676632 -46068266 + MLT1E LTR MaLR 2 593 0 204 122 98 0 chr13 73677458 73677499 -46067399 - L2 LINE L2 -1120 2194 2150 288 53 0 0 chr13 73677546 73677584 -46067314 + (CA)n Simple_repeat Simple_repeat 1 38 0 2718 29 0 3 chr13 73678349 73678661 -46066237 - AluY SINE Alu 0 311 1 281 305 39 0 chr13 73678767 73678895 -46066003 + MLT1I LTR MaLR 263 395 -14 637 184 117 15 chr13 73678996 73679202 -46065696 + L1MCc LINE L1 16 242 -6181 4403 159 12 5 chr13 73679402 73680202 -46064696 + L1PB4 LINE L1 5337 6142 -14 441 312 211 10 chr13 73680290 73680598 -46064300 + L3 LINE CR1 135 504 -1073 180 349 64 37 chr13 73680617 73680726 -46064172 - L2 LINE L2 -2860 454 343 830 286 44 12 chr13 73680758 73681010 -46063888 - MIR SINE MIR 0 262 3 2130 94 49 7 chr13 73681323 73681610 -46063288 + AluSq SINE Alu 1 299 -14 24 32 0 0 chr13 73684343 73684374 -46060524 + AT_rich Low_complexity Low_complexity 1 31 0 200 111 28 0 chr13 73684693 73684729 -46060169 + T-rich Low_complexity Low_complexity 6 42 0 207 0 0 0 chr13 73685562 73685585 -46059313 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr13 73685684 73685706 -46059192 + AT_rich Low_complexity Low_complexity 1 22 0 1807 96 89 58 chr13 73686123 73686414 -46058484 + AluSx SINE Alu 1 300 -12 1331 52 4 29 chr13 73686425 73686659 -46058239 + (GAAA)n Simple_repeat Simple_repeat 1 229 0 912 270 48 0 chr13 73687062 73687292 -46057606 - L2 LINE L2 -525 2789 2549 1261 145 5 0 chr13 73687295 73687495 -46057403 + L1MC1 LINE L1 6113 6313 -20 247 356 26 17 chr13 73687500 73687615 -46057283 - L2 LINE L2 -755 2559 2444 301 216 68 0 chr13 73687629 73687703 -46057195 - L2 LINE L2 -973 2341 2263 881 126 32 47 chr13 73687982 73688172 -46056726 - L1MA8 LINE L1 -1 6290 6104 186 289 133 12 chr13 73688468 73688551 -46056347 + MER5A DNA MER1_type 73 165 -24 * 264 307 114 0 chr13 73688477 73688565 -46056333 - MER5A DNA MER1_type -70 119 22 2036 168 27 56 chr13 73688814 73689079 -46055819 + Tigger2a DNA MER2_type 2 250 -2458 2424 57 0 10 chr13 73689079 73689377 -46055521 + AluY SINE Alu 1 295 -16 2036 168 27 56 chr13 73689377 73689557 -46055341 + Tigger2a DNA MER2_type 250 434 0 2015 116 30 10 chr13 73690093 73690394 -46054504 + AluSg SINE Alu 1 307 -3 2126 90 0 17 chr13 73690401 73690690 -46054208 + AluSg SINE Alu 1 284 -26 2025 235 39 13 chr13 73691039 73691580 -46053318 - MLT1H1 LTR MaLR 0 555 1 1712 145 84 10 chr13 73691926 73692236 -46052662 - MER1B DNA MER1_type -4 333 1 337 309 13 0 chr13 73692408 73692557 -46052341 + MLT1K LTR MaLR 61 211 -377 425 313 42 7 chr13 73693057 73693201 -46051697 - L2 LINE L2 0 3313 3165 4291 118 1 11 chr13 73693210 73693914 -46050984 + L1P LINE L1 2 698 -5448 266 261 43 11 chr13 73695566 73695658 -46049240 + L1MC5 LINE L1 7835 7929 -32 9005 171 19 1 chr13 73696591 73698199 -46046699 + L1P LINE L1 3308 4943 -1203 2373 79 3 0 chr13 73698299 73698603 -46046295 + AluY SINE Alu 7 311 0 809 232 12 2 chr13 73698664 73698844 -46046054 - MER5A DNA MER1_type 0 178 3 587 311 82 0 chr13 73699069 73699252 -46045646 + MIR SINE MIR 47 244 -18 437 224 47 73 chr13 73699634 73699826 -46045072 + L1MC4a LINE L1 5768 5954 -1854 377 280 34 8 chr13 73700211 73700329 -46044569 + MIR SINE MIR 130 250 -12 192 264 138 11 chr13 73700542 73700629 -46044269 + MIR3 SINE MIR 10 107 -101 919 242 8 19 chr13 73701171 73701427 -46043471 + L1M3c LINE L1 1323 1575 -4566 43 47 0 0 chr13 73701458 73701522 -46043376 + AT_rich Low_complexity Low_complexity 1 64 0 1834 166 14 0 chr13 73702348 73702650 -46042248 + AluJo SINE Alu 1 306 0 198 269 30 45 chr13 73702656 73702723 -46042175 - L2 LINE L2 -2 3270 3205 2464 88 0 0 chr13 73702724 73703029 -46041869 - AluSx SINE Alu -5 307 3 811 140 0 22 chr13 73703109 73703245 -46041653 + AluJb SINE Alu 1 133 -179 768 311 55 31 chr13 73703460 73703843 -46041055 - L2 LINE L2 -896 2418 2027 237 300 133 0 chr13 73703915 73704005 -46040893 + MLT1L LTR MaLR 90 191 -424 470 249 66 41 chr13 73704167 73704364 -46040534 + MLT1K LTR MaLR 387 588 0 364 286 128 46 chr13 73704364 73704693 -46040205 - L2 LINE L2 -1282 2032 1677 1188 161 44 19 chr13 73705101 73705306 -46039592 + AluJb SINE Alu 86 295 -17 1524 162 0 112 chr13 73705698 73706037 -46038861 - AluJo SINE Alu -11 301 1 2288 89 3 0 chr13 73706318 73706611 -46038287 + AluSg SINE Alu 1 294 -16 609 189 0 0 chr13 73706849 73706944 -46037954 - FLAM_A SINE Alu -30 112 18 1611 166 0 15 chr13 73707003 73707128 -46037770 + AluJo SINE Alu 12 137 -175 2264 110 3 13 chr13 73707128 73707438 -46037460 + AluSq SINE Alu 1 307 -6 1611 166 0 15 chr13 73707438 73707577 -46037321 + AluJo SINE Alu 137 272 -40 204 40 0 0 chr13 73707590 73707615 -46037283 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 5574 118 19 5 chr13 73707841 73708668 -46036230 - Tigger1 DNA MER2_type 0 2418 1580 201 153 17 34 chr13 73708669 73708728 -46036170 + (TAA)n Simple_repeat Simple_repeat 1 58 0 2017 135 0 0 chr13 73709008 73709296 -46035602 - AluSx SINE Alu 0 312 25 1013 184 18 0 chr13 73709393 73709556 -46035342 - FRAM SINE Alu 0 166 1 21 0 0 0 chr13 73709623 73709644 -46035254 + AT_rich Low_complexity Low_complexity 1 21 0 1777 139 38 4 chr13 73709653 73709920 -46034978 + AluSx SINE Alu 1 276 -36 212 0 36 0 chr13 73709923 73709951 -46034947 + (TAA)n Simple_repeat Simple_repeat 2 30 0 208 327 60 20 chr13 73710499 73710649 -46034249 - MIR3 SINE MIR -27 181 26 2263 99 0 60 chr13 73710723 73711056 -46033842 + AluSq SINE Alu 1 313 0 1054 134 41 0 chr13 73711058 73711229 -46033669 + AluJb SINE Alu 120 297 -15 2774 3 0 3 chr13 73711306 73711606 -46033292 - AluYa5 SINE Alu -12 299 1 2500 74 0 3 chr13 73713005 73713317 -46031581 + AluY SINE Alu 1 311 0 215 238 12 48 chr13 73713668 73713696 -46031202 + GA-rich Low_complexity Low_complexity 4 31 -53 2048 118 12 40 chr13 73713696 73714018 -46030880 + AluSq SINE Alu 1 313 0 215 238 12 48 chr13 73714018 73714073 -46030825 + GA-rich Low_complexity Low_complexity 31 84 0 1438 187 33 40 chr13 73714269 73714569 -46030329 + AluJb SINE Alu 1 298 -14 342 0 0 0 chr13 73714570 73714608 -46030290 + (TA)n Simple_repeat Simple_repeat 2 39 0 2388 48 6 70 chr13 73714691 73715022 -46029876 - AluY SINE Alu -1 310 1 1697 131 127 0 chr13 73715270 73715529 -46029369 + AluSx SINE Alu 1 292 -20 514 101 59 10 chr13 73715538 73715938 -46028960 + (TA)n Simple_repeat Simple_repeat 1 419 0 595 296 117 0 chr13 73715974 73716170 -46028728 - MIR SINE MIR -36 226 8 2059 135 3 22 chr13 73716852 73717170 -46027728 + AluSx SINE Alu 1 312 0 828 242 26 41 chr13 73717178 73717447 -46027451 + HAL1 LINE L1 2243 2507 0 599 285 44 48 chr13 73717820 73718115 -46026783 + HAL1 LINE L1 274 567 -1940 2071 115 21 0 chr13 73718130 73718416 -46026482 + AluSx SINE Alu 3 294 -18 2268 108 0 0 chr13 73719214 73719510 -46025388 - AluSq SINE Alu -17 296 1 2669 29 0 7 chr13 73720018 73720325 -46024573 + AluY SINE Alu 1 305 -6 675 187 8 37 chr13 73721331 73721465 -46023433 + FLAM_A SINE Alu 1 130 -3 2111 131 34 0 chr13 73721657 73721955 -46022943 + AluSg SINE Alu 1 308 -2 1733 158 7 42 chr13 73722076 73722386 -46022512 - AluJo SINE Alu -8 304 6 237 344 52 21 chr13 73722489 73722585 -46022313 - L2 LINE L2 -32 3240 3142 483 304 48 10 chr13 73722638 73722845 -46022053 - MIR SINE MIR -15 247 33 727 91 30 0 chr13 73722908 73723007 -46021891 + U6 snRNA snRNA 1 102 -5 21 36 0 0 chr13 73723252 73723280 -46021618 + AT_rich Low_complexity Low_complexity 1 28 0 214 250 0 31 chr13 73723334 73723398 -46021500 + A-rich Low_complexity Low_complexity 3 64 0 2262 112 0 0 chr13 73723408 73723704 -46021194 + AluSq SINE Alu 1 296 -17 276 190 80 70 chr13 73723773 73723873 -46021025 + MIR SINE MIR 53 153 -109 29 47 0 0 chr13 73723934 73723977 -46020921 + AT_rich Low_complexity Low_complexity 1 43 0 215 313 62 0 chr13 73723980 73724060 -46020838 + MIR SINE MIR 170 254 -8 318 285 35 56 chr13 73724074 73724218 -46020680 + L3b LINE CR1 1202 1342 -241 232 252 77 91 chr13 73725508 73725651 -46019247 + MIR SINE MIR 50 190 -72 1898 127 3 60 chr13 73725868 73726232 -46018666 - AluSx SINE Alu 0 312 1 1696 185 10 16 chr13 73726267 73726581 -46018317 + AluJo SINE Alu 1 312 0 25 0 0 0 chr13 73726777 73726802 -46018096 + AT_rich Low_complexity Low_complexity 1 25 0 1675 147 48 0 chr13 73726805 73727078 -46017820 + AluJb SINE Alu 1 286 -26 310 147 76 0 chr13 73727078 73727518 -46017380 + (TA)n Simple_repeat Simple_repeat 1 473 0 313 103 0 35 chr13 73727533 73727591 -46017307 - L1MA2 LINE L1 0 6304 6249 338 298 79 51 chr13 73728407 73728585 -46016313 - MIR SINE MIR -45 217 35 1291 134 10 0 chr13 73729283 73729477 -46015421 - AluSg/x SINE Alu -5 307 112 2124 120 10 0 chr13 73729644 73729944 -46014954 + AluSq SINE Alu 1 303 -10 1693 169 3 68 chr13 73729960 73730074 -46014824 + AluJo SINE Alu 2 122 -198 2232 116 0 16 chr13 73730074 73730211 -46014687 + AluSx SINE Alu 1 139 -173 2144 137 0 0 chr13 73730211 73730510 -46014388 + AluSp SINE Alu 1 299 -14 2232 116 0 16 chr13 73730510 73730683 -46014215 + AluSx SINE Alu 139 306 -6 1693 169 3 68 chr13 73730683 73730907 -46013991 + AluJo SINE Alu 122 320 0 2219 108 3 16 chr13 73730978 73731292 -46013606 - AluSq SINE Alu -3 310 1 213 175 0 0 chr13 73731593 73731633 -46013265 + GA-rich Low_complexity Low_complexity 2 41 0 897 103 71 0 chr13 73731633 73731759 -46013139 + AluSq/x SINE Alu 1 135 -178 2293 103 0 13 chr13 73731759 73732070 -46012828 + AluSc SINE Alu 1 307 -2 2485 39 0 0 chr13 73733397 73733709 -46011189 + AluY SINE Alu 1 312 0 225 224 52 0 chr13 73734709 73734767 -46010131 - L2 LINE L2 -1 3312 3252 246 128 0 0 chr13 73735556 73735595 -46009303 + (A)n Simple_repeat Simple_repeat 1 39 0 2290 107 3 0 chr13 73735883 73736192 -46008706 - AluSp SINE Alu -3 310 1 1992 136 7 0 chr13 73736477 73736777 -46008121 - AluSx SINE Alu 0 302 1 2631 50 0 0 chr13 73736955 73737257 -46007641 - AluY SINE Alu -9 302 1 1623 151 40 33 chr13 73737448 73737747 -46007151 - AluSx SINE Alu -11 301 1 202 122 0 61 chr13 73737806 73737855 -46007043 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 2033 128 7 0 chr13 73737895 73738193 -46006705 + AluSx SINE Alu 1 300 -12 1388 164 89 31 chr13 73738259 73738551 -46006347 - AluJo SINE Alu -3 309 1 278 264 0 56 chr13 73738682 73738754 -46006144 + L2 LINE L2 3116 3183 -89 250 258 25 23 chr13 73739434 73739588 -46005310 - MER5A DNA MER1_type -23 166 42 2200 125 3 0 chr13 73739845 73740156 -46004742 + AluSx SINE Alu 1 312 0 1084 152 11 11 chr13 73740156 73740334 -46004564 + AluSg/x SINE Alu 134 311 -1 210 298 83 74 chr13 73740516 73740637 -46004261 - L2 LINE L2 -3 3269 3148 2380 75 7 3 chr13 73740783 73741089 -46003809 + AluY SINE Alu 1 307 -4 819 144 0 0 chr13 73741123 73741248 -46003650 + AluJb SINE Alu 13 137 -175 248 0 0 30 chr13 73741289 73741322 -46003576 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 803 217 19 0 chr13 73741326 73741487 -46003411 + AluJb SINE Alu 134 297 -15 2062 93 10 55 chr13 73741556 73741866 -46003032 - AluSx SINE Alu -16 296 1 232 209 116 93 chr13 73741898 73742027 -46002871 - AluYb8 SINE Alu -175 133 2 2198 100 4 0 chr13 73742191 73742508 -46002390 + AluSp SINE Alu 1 318 0 2144 91 3 20 chr13 73743181 73743502 -46001396 - AluSq SINE Alu 0 313 1 653 160 0 0 chr13 73743540 73743634 -46001264 + FRAM/FAM SINE Alu 1 90 -86 2204 123 3 0 chr13 73743667 73743975 -46000923 - AluSx SINE Alu -3 309 1 624 223 68 39 chr13 73743975 73744181 -46000717 + L1MC5 LINE L1 7720 7931 -30 1787 159 17 7 chr13 73744188 73744490 -46000408 - AluJb SINE Alu -7 305 1 417 314 21 32 chr13 73744529 73744596 -46000302 + L1ME LINE L1 5604 5670 -451 2002 146 3 3 chr13 73744596 73744890 -46000008 + AluJo SINE Alu 1 294 -18 417 314 21 32 chr13 73744890 73745010 -45999888 + L1ME LINE L1 5670 5789 -332 2235 105 0 0 chr13 73745816 73746112 -45998786 + AluSx SINE Alu 1 296 -16 372 265 77 72 chr13 73746119 73746300 -45998598 + MIR SINE MIR 49 230 -32 814 134 28 49 chr13 73746579 73746721 -45998177 + FLAM_C SINE Alu 2 140 -3 1708 182 0 3 chr13 73747127 73747418 -45997480 - AluJb SINE Alu -22 290 1 563 251 34 89 chr13 73747432 73747653 -45997245 - L1MEc LINE L1 -4122 2274 2042 1026 141 0 0 chr13 73747653 73747823 -45997075 + (TA)n Simple_repeat Simple_repeat 2 171 0 563 251 34 89 chr13 73747823 73747838 -45997060 - L1MEc LINE L1 -4354 2042 2028 1762 163 25 0 chr13 73747838 73748120 -45996778 - AluJb SINE Alu -23 289 1 563 251 34 89 chr13 73748120 73748321 -45996577 - L1MEc LINE L1 -4368 2028 1860 2146 121 0 3 chr13 73749329 73749618 -45995280 + AluSx SINE Alu 3 290 -22 2262 117 0 3 chr13 73749668 73749976 -45994922 + AluSc SINE Alu 1 307 -2 222 315 130 22 chr13 73750552 73750644 -45994254 - L2 LINE L2 -1 3312 3211 1171 218 42 54 chr13 73750650 73750669 -45994229 - HAL1 LINE L1 -1590 917 899 2274 94 19 13 chr13 73750669 73750977 -45993921 - AluSg SINE Alu 0 310 1 1171 218 42 54 chr13 73750977 73751048 -45993850 - HAL1 LINE L1 -1608 899 829 2322 81 0 0 chr13 73751048 73751366 -45993532 - AluSq SINE Alu 0 318 1 1171 218 42 54 chr13 73751366 73751607 -45993291 - HAL1 LINE L1 -1678 829 587 294 215 17 164 chr13 73751784 73751861 -45993037 - HAL1 LINE L1 -1933 574 536 2200 95 0 10 chr13 73751861 73752157 -45992741 - AluSx SINE Alu -10 302 10 294 215 17 164 chr13 73752157 73752256 -45992642 - HAL1 LINE L1 -1971 536 424 272 273 0 0 chr13 73752370 73752436 -45992462 + MER103 DNA DNA 52 117 -49 303 93 0 0 chr13 73752879 73752922 -45991976 + (TA)n Simple_repeat Simple_repeat 1 43 0 1276 188 123 0 chr13 73753141 73753402 -45991496 - AluJo SINE Alu -9 303 11 1506 198 23 7 chr13 73754359 73754662 -45990236 + AluJb SINE Alu 5 312 0 318 167 0 0 chr13 73754675 73754735 -45990163 + GA-rich Low_complexity Low_complexity 3 62 0 2002 99 4 0 chr13 73754957 73755209 -45989689 - AluSx SINE Alu -59 253 1 3682 182 118 48 chr13 73755219 73755410 -45989488 - L1MC3 LINE L1 0 7785 7609 1854 119 16 64 chr13 73755410 73755543 -45989355 + AluSx SINE Alu 5 143 -169 2496 69 3 0 chr13 73755543 73755848 -45989050 + AluY SINE Alu 2 307 -4 1854 119 16 64 chr13 73755848 73756025 -45988873 + AluSx SINE Alu 143 300 -12 3682 182 118 48 chr13 73756025 73756670 -45988228 - L1MC3 LINE L1 -176 7609 6865 2453 77 0 0 chr13 73756670 73756969 -45987929 - AluSq SINE Alu -14 299 1 3682 182 118 48 chr13 73756969 73757129 -45987769 - L1MC3 LINE L1 -920 6865 6718 2406 66 7 0 chr13 73757130 73757419 -45987479 + L1PA7 LINE L1 5859 6149 -5 1899 128 50 0 chr13 73757451 73757733 -45987165 + AluSx SINE Alu 1 296 -16 2182 97 10 7 chr13 73757977 73758266 -45986632 + AluSg SINE Alu 1 290 -20 25 65 0 0 chr13 73758728 73758774 -45986124 + AT_rich Low_complexity Low_complexity 1 46 0 427 288 27 9 chr13 73761001 73761112 -45983786 - L2 LINE L2 -4 3268 3156 200 229 71 14 chr13 73764815 73764885 -45980013 + L2 LINE L2 3172 3245 -68 2176 127 0 10 chr13 73766801 73767115 -45977783 - AluSx SINE Alu -1 311 1 2219 122 3 0 chr13 73767199 73767503 -45977395 - AluSx SINE Alu -7 305 1 2468 68 3 0 chr13 73767790 73768086 -45976812 + AluSq SINE Alu 6 302 -11 22 0 0 0 chr13 73768988 73769010 -45975888 + AT_rich Low_complexity Low_complexity 1 22 0 2181 98 3 0 chr13 73771084 73771370 -45973528 + AluSg SINE Alu 1 287 -23 22 0 0 0 chr13 73771916 73771938 -45972960 + AT_rich Low_complexity Low_complexity 1 22 0 267 133 0 0 chr13 73773108 73773153 -45971745 + (CA)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chr13 73775746 73775768 -45969130 + (T)n Simple_repeat Simple_repeat 1 22 0 316 268 137 104 chr13 73776290 73776742 -45968156 - L1M2 LINE L1 -5595 1254 788 21 36 0 0 chr13 73778341 73778369 -45966529 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 73780530 73780552 -45964346 + AT_rich Low_complexity Low_complexity 1 22 0 408 216 125 153 chr13 73781196 73781415 -45963483 + L1ME4a LINE L1 5521 5745 -376 1908 165 0 0 chr13 73781415 73781700 -45963198 + AluJo SINE Alu 1 285 -27 408 216 125 153 chr13 73781700 73782007 -45962891 + L1ME4a LINE L1 5745 6030 -91 2296 107 0 0 chr13 73782007 73782307 -45962591 + AluSx SINE Alu 2 301 -11 408 216 125 153 chr13 73782307 73782395 -45962503 + L1ME4a LINE L1 6030 6119 -2 1823 161 13 3 chr13 73782954 73783252 -45961646 - AluJo SINE Alu -11 301 1 1792 167 0 21 chr13 73783418 73783706 -45961192 + AluJo SINE Alu 11 292 -20 200 250 0 167 chr13 73783853 73783928 -45960970 - L2 LINE L2 -14 3258 3205 2477 73 0 0 chr13 73783928 73784230 -45960668 + AluY SINE Alu 1 302 -9 200 250 0 167 chr13 73784230 73784262 -45960636 - L2 LINE L2 -67 3205 3169 2426 92 0 12 chr13 73784549 73784877 -45960021 + THE1B LTR MaLR 1 324 -40 1967 128 0 0 chr13 73784878 73785152 -45959746 + AluSx SINE Alu 1 274 -38 1689 163 3 45 chr13 73785469 73785782 -45959116 + AluJo SINE Alu 7 306 -6 2318 98 0 0 chr13 73785834 73786131 -45958767 + AluSc SINE Alu 13 309 0 191 56 0 56 chr13 73786131 73786162 -45958736 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1140 166 62 231 chr13 73786162 73786410 -45958488 + L1MC4 LINE L1 7159 7447 -595 1716 172 3 34 chr13 73786410 73786701 -45958197 + AluJo SINE Alu 1 282 -30 1140 166 62 231 chr13 73786701 73787004 -45957894 + L1MC4 LINE L1 7447 7800 -242 2082 135 24 3 chr13 73787004 73787301 -45957597 - AluSx SINE Alu -9 303 1 1140 166 62 231 chr13 73787301 73787465 -45957433 + L1MC4 LINE L1 7800 7662 -380 2035 136 10 3 chr13 73787465 73787773 -45957125 + AluSx SINE Alu 1 310 -2 1140 166 62 231 chr13 73787773 73788055 -45956843 + L1MC4 LINE L1 7661 7989 -53 1357 105 0 11 chr13 73788055 73788245 -45956653 + AluSg/x SINE Alu 120 307 -5 388 113 0 16 chr13 73788246 73788308 -45956590 + L1MC4 LINE L1 7981 8041 -1 378 0 0 0 chr13 73788642 73788684 -45956214 + (CA)n Simple_repeat Simple_repeat 2 43 0 2232 109 0 7 chr13 73788758 73789060 -45955838 + AluSq SINE Alu 1 300 -13 2461 70 0 0 chr13 73789060 73789360 -45955538 + AluY SINE Alu 1 300 -11 2436 97 0 0 chr13 73789447 73789757 -45955141 - AluSg SINE Alu 0 310 1 2415 61 0 29 chr13 73789991 73790302 -45954596 - AluY SINE Alu -8 303 2 946 177 6 18 chr13 73790970 73791134 -45953764 + AluJb SINE Alu 135 296 -16 491 262 0 53 chr13 73791183 73791272 -45953626 + L1ME LINE L1 5212 5308 -866 2360 88 7 10 chr13 73791272 73791407 -45953491 + AluSp SINE Alu 1 135 -178 2266 104 0 7 chr13 73791407 73791705 -45953193 + AluSc SINE Alu 1 296 -13 2360 88 7 10 chr13 73791705 73791874 -45953024 + AluSp SINE Alu 135 304 -9 491 262 0 53 chr13 73791874 73792106 -45952792 + L1ME LINE L1 5308 5552 -622 840 179 0 7 chr13 73792178 73792318 -45952580 + FLAM_C SINE Alu 1 139 -4 549 244 46 74 chr13 73792346 73792563 -45952335 + L1ME LINE L1 5600 5810 -311 610 86 0 0 chr13 73792565 73792646 -45952252 - AluSc SINE Alu -16 293 213 2113 82 0 0 chr13 73792647 73792904 -45951994 - AluSg SINE Alu -53 257 1 818 156 0 23 chr13 73792965 73793093 -45951805 + FLAM_C SINE Alu 2 126 -17 2613 59 0 0 chr13 73793102 73793408 -45951490 + AluY SINE Alu 1 306 -5 27 49 0 0 chr13 73793408 73793449 -45951449 + AT_rich Low_complexity Low_complexity 1 41 0 2327 108 7 0 chr13 73794010 73794316 -45950582 + AluSg SINE Alu 1 308 -2 1254 168 0 14 chr13 73794327 73794536 -45950362 - AluJo SINE Alu -22 290 85 221 192 41 55 chr13 73796561 73796634 -45948264 - L3b LINE CR1 -188 1395 1324 2239 115 0 0 chr13 73796678 73796987 -45947911 + AluSc SINE Alu 1 308 -1 198 0 0 67 chr13 73796987 73797017 -45947881 + (CAAAAA)n Simple_repeat Simple_repeat 4 180 0 291 54 0 0 chr13 73797017 73797054 -45947844 + (TA)n Simple_repeat Simple_repeat 2 38 0 2097 102 7 7 chr13 73797938 73798256 -45946642 - AluSq SINE Alu 0 318 1 333 368 35 11 chr13 73798365 73798539 -45946359 + MIR SINE MIR 14 191 -71 1079 151 0 29 chr13 73798630 73798879 -45946019 - AluJb SINE Alu 0 364 121 571 228 38 60 chr13 73798896 73799080 -45945818 - MER21B LTR ERV1 -364 499 320 1918 154 0 0 chr13 73799557 73799843 -45945055 - AluJb SINE Alu -26 286 1 376 298 74 0 chr13 73800360 73800481 -45944417 + MIR SINE MIR 62 191 -71 214 268 36 0 chr13 73800559 73800615 -45944283 - MIR SINE MIR -103 105 48 * 313 359 77 36 chr13 73800603 73800823 -45944075 + L3 LINE CR1 198 426 -1151 208 184 20 0 chr13 73800969 73801018 -45943880 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 834 134 134 0 chr13 73801193 73801335 -45943563 - AluSq SINE Alu -18 295 135 267 346 10 10 chr13 73801339 73801440 -45943458 + L3 LINE CR1 1091 1191 -386 2162 86 3 16 chr13 73801469 73801773 -45943125 - AluSp SINE Alu -13 300 1 1908 115 39 20 chr13 73801777 73802082 -45942816 - AluYa5 SINE Alu 0 311 1 1411 194 4 4 chr13 73802183 73802441 -45942457 - AluJo SINE Alu -43 269 12 266 258 124 21 chr13 73802445 73802542 -45942356 - MIR3 SINE MIR -49 159 53 1890 224 85 4 chr13 73802640 73803122 -45941776 + L1MC4 LINE L1 7522 8042 0 1207 151 14 18 chr13 73803129 73803269 -45941629 + AluJo SINE Alu 1 141 -171 1642 194 7 3 chr13 73803269 73803558 -45941340 + AluJb SINE Alu 6 295 -17 1207 151 14 18 chr13 73803558 73803636 -45941262 + AluJo SINE Alu 141 218 -94 2217 108 0 0 chr13 73803691 73803986 -45940912 + AluSx SINE Alu 13 307 -5 2390 92 0 7 chr13 73804165 73804471 -45940427 + AluSq SINE Alu 1 304 -9 1382 146 4 13 chr13 73804556 73804782 -45940116 + AluJb SINE Alu 87 310 -2 836 166 0 14 chr13 73804984 73805129 -45939769 + FLAM_C SINE Alu 1 143 0 958 159 0 0 chr13 73805141 73805292 -45939606 + AluJo SINE Alu 118 268 -44 22 35 0 0 chr13 73805400 73805429 -45939469 + AT_rich Low_complexity Low_complexity 1 29 0 560 120 9 137 chr13 73805795 73805956 -45938942 - L1PA8 LINE L1 0 6172 5991 1806 171 3 3 chr13 73805974 73806283 -45938615 - AluJo SINE Alu -3 309 1 280 250 138 56 chr13 73806960 73807120 -45937778 - L2 LINE L2 -48 3265 3093 2250 98 0 0 chr13 73807245 73807552 -45937346 + AluSx SINE Alu 1 307 0 2292 102 3 0 chr13 73807696 73807999 -45936899 + AluSg SINE Alu 1 304 -6 943 117 0 16 chr13 73808123 73808251 -45936647 + FLAM_C SINE Alu 2 127 -6 1907 142 3 19 chr13 73808291 73808600 -45936298 + AluJo SINE Alu 1 304 -8 274 276 26 13 chr13 73808798 73808874 -45936024 - L2 LINE L2 -50 3263 3187 2311 97 0 0 chr13 73809016 73809315 -45935583 - AluSx SINE Alu -13 299 1 196 128 21 21 chr13 73809974 73810021 -45934877 + GA-rich Low_complexity Low_complexity 2 48 0 183 129 0 0 chr13 73810236 73810267 -45934631 + (T)n Simple_repeat Simple_repeat 1 31 0 750 157 61 0 chr13 73810740 73810855 -45934043 - FLAM_A SINE Alu -10 123 2 1757 179 0 7 chr13 73810876 73811166 -45933732 + AluJb SINE Alu 5 292 -20 211 338 14 35 chr13 73811237 73811379 -45933519 - L2 LINE L2 -254 3018 2880 312 245 129 92 chr13 73811476 73811639 -45933259 - MER63A DNA MER1_type -37 173 5 1572 144 144 0 chr13 73811750 73812020 -45932878 - AluSx SINE Alu -3 309 1 2005 103 29 18 chr13 73812501 73812805 -45932093 + AluSx SINE Alu 2 308 0 284 263 149 18 chr13 73813355 73813469 -45931429 - L2 LINE L2 -613 2701 2573 234 326 38 15 chr13 73813537 73813669 -45931229 + L1MC4a LINE L1 6558 6692 -1116 * 397 307 0 26 chr13 73813666 73813819 -45931079 - L1MC5 LINE L1 -528 7433 7285 207 0 0 0 chr13 73813838 73813861 -45931037 + (CACAT)n Simple_repeat Simple_repeat 5 27 0 203 156 0 0 chr13 73814026 73814058 -45930840 + (CCTG)n Simple_repeat Simple_repeat 3 34 0 472 216 0 79 chr13 73814091 73814139 -45930759 - L1MA10 LINE L1 -7 6327 6277 2257 107 3 0 chr13 73814139 73814437 -45930461 + AluSx SINE Alu 1 299 -13 472 216 0 79 chr13 73814437 73814527 -45930371 - L1MA10 LINE L1 -57 6277 6200 2489 83 0 0 chr13 73814572 73814884 -45930014 - AluSx SINE Alu 0 312 1 648 301 138 19 chr13 73814919 73815348 -45929550 - L2 LINE L2 -787 2527 2048 26 74 0 0 chr13 73815662 73815716 -45929182 + AT_rich Low_complexity Low_complexity 1 54 0 2453 74 0 0 chr13 73815790 73816087 -45928811 - AluY SINE Alu -14 297 1 2209 99 10 7 chr13 73816603 73816897 -45928001 + AluSx SINE Alu 1 295 -17 327 49 0 0 chr13 73816914 73816955 -45927943 + (GA)n Simple_repeat Simple_repeat 2 42 0 199 330 60 30 chr13 73816977 73817077 -45927821 - L3 LINE CR1 -7 1570 1468 440 104 90 15 chr13 73817442 73817509 -45927389 + tRNA-Glu-GAA tRNA tRNA 1 72 -3 219 103 0 0 chr13 73817525 73817564 -45927334 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 637 174 23 45 chr13 73817664 73817796 -45927102 + FLAM_A SINE Alu 1 129 -4 510 298 81 5 chr13 73817893 73818091 -45926807 + MIR SINE MIR 48 260 -2 22 70 0 0 chr13 73818131 73818174 -45926724 + AT_rich Low_complexity Low_complexity 1 43 0 1489 162 59 19 chr13 73818179 73818450 -45926448 + AluJo SINE Alu 1 282 -30 513 47 0 0 chr13 73818450 73818514 -45926384 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 256 167 0 0 chr13 73818561 73818603 -45926295 + L1M3 LINE L1 5712 5753 -418 880 138 8 8 chr13 73818637 73818767 -45926131 + FLAM_C SINE Alu 1 130 -3 488 176 6 126 chr13 73818781 73818917 -45925981 + MER20 DNA MER1_type 77 193 -26 2347 93 3 0 chr13 73818917 73819219 -45925679 + AluSq SINE Alu 1 303 -10 488 176 6 126 chr13 73819219 73819241 -45925657 + MER20 DNA MER1_type 193 216 -3 30 27 0 0 chr13 73819791 73819828 -45925070 + AT_rich Low_complexity Low_complexity 1 37 0 1635 148 7 62 chr13 73820634 73820844 -45924054 + AluJo SINE Alu 1 190 -122 1938 138 14 3 chr13 73820844 73821127 -45923771 + AluSx SINE Alu 5 290 -22 1635 148 7 62 chr13 73821127 73821221 -45923677 + AluJo SINE Alu 190 288 -24 1540 146 11 57 chr13 73821222 73821502 -45923396 - L1MC1 LINE L1 -47 6286 6020 790 205 26 0 chr13 73821505 73821661 -45923237 - L1M4 LINE L1 -2411 3735 3576 1018 146 104 0 chr13 73821669 73821833 -45923065 + AluJb SINE Alu 1 181 -131 384 103 0 0 chr13 73821839 73821897 -45923001 + (GGGGA)n Simple_repeat Simple_repeat 1 58 0 233 213 0 21 chr13 73821897 73821944 -45922954 - L1M4 LINE L1 -2599 3547 3502 1182 111 121 18 chr13 73821950 73822166 -45922732 - L1MCa LINE L1 -4633 1793 1467 1390 158 23 0 chr13 73822166 73822387 -45922511 - AluJb SINE Alu -2 310 85 947 131 85 103 chr13 73822387 73822595 -45922303 - L1MCa LINE L1 -4951 1475 1272 2894 10 0 0 chr13 73822595 73822906 -45921992 - AluY SINE Alu 0 311 1 947 131 85 103 chr13 73822906 73822979 -45921919 - L1MCa LINE L1 -5154 1272 1199 * 6175 155 71 42 chr13 73822968 73823141 -45921757 - L1MCa LINE L1 -5072 1354 1188 234 0 0 0 chr13 73823141 73823167 -45921731 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1433 148 19 113 chr13 73823171 73823482 -45921416 - AluJo SINE Alu -30 282 1 6175 155 71 42 chr13 73823482 73823559 -45921339 - L1MCa LINE L1 -5240 1186 1113 2218 114 3 0 chr13 73823559 73823856 -45921042 - AluSq SINE Alu -15 298 1 6175 155 71 42 chr13 73823856 73824799 -45920099 - L1MCa LINE L1 -5313 1113 114 2495 70 3 13 chr13 73824799 73825115 -45919783 + AluSq SINE Alu 1 313 0 6175 155 71 42 chr13 73825115 73825162 -45919736 - L1MCa LINE L1 -6312 114 70 2289 112 0 0 chr13 73825300 73825605 -45919293 - AluSx SINE Alu -7 305 1 594 239 142 9 chr13 73825605 73825831 -45919067 - MER112 DNA MER1_type -4 256 1 272 293 12 12 chr13 73826409 73826491 -45918407 - L2 LINE L2 -4 3309 3228 230 167 0 0 chr13 73826512 73826548 -45918350 + U2 snRNA snRNA 1 36 -152 * 1336 271 43 24 chr13 73826544 73826961 -45917937 + MLT1J LTR MaLR 5 429 -82 192 158 79 0 chr13 73827142 73827180 -45917718 + MIR SINE MIR 1 41 -221 600 222 97 38 chr13 73827233 73827418 -45917480 + L2 LINE L2 3118 3313 0 321 230 185 19 chr13 73828031 73828099 -45916799 + MER58C DNA MER1_type 1 56 -159 2459 70 3 0 chr13 73828099 73828398 -45916500 - AluSp SINE Alu -13 300 1 321 230 185 19 chr13 73828398 73828444 -45916454 + MER58C DNA MER1_type 56 144 -71 865 108 0 0 chr13 73828518 73828638 -45916260 + AluSg/x SINE Alu 188 307 -3 237 129 32 16 chr13 73828865 73828927 -45915971 + (TA)n Simple_repeat Simple_repeat 2 64 0 2340 104 3 0 chr13 73829707 73830006 -45914892 + AluSx SINE Alu 1 300 -12 54 29 0 0 chr13 73830380 73830448 -45914450 + AT_rich Low_complexity Low_complexity 1 68 0 893 190 0 95 chr13 73830448 73830669 -45914229 - AluJb SINE Alu -26 286 87 1196 157 30 30 chr13 73830691 73830735 -45914163 - L1MB3 LINE L1 -8 6175 6132 2169 101 35 0 chr13 73830735 73831023 -45913875 - AluSp SINE Alu -15 298 1 1196 157 30 30 chr13 73831023 73831214 -45913684 - L1MB3 LINE L1 -50 6133 5940 2326 107 3 0 chr13 73831407 73831717 -45913181 - AluSx SINE Alu -1 311 1 1866 164 0 16 chr13 73831911 73832216 -45912682 + AluJb SINE Alu 1 300 -12 2176 110 0 10 chr13 73832370 73832669 -45912229 + AluSx SINE Alu 1 296 -16 2212 113 3 3 chr13 73832918 73833220 -45911678 - AluSx SINE Alu -6 306 5 280 245 245 0 chr13 73833733 73833827 -45911071 - L2 LINE L2 -9 3304 3188 2251 105 0 7 chr13 73834005 73834300 -45910598 + AluSg SINE Alu 2 294 -16 252 306 73 57 chr13 73834711 73834835 -45910063 - MIR3 SINE MIR -7 201 76 1469 141 118 4 chr13 73835862 73836139 -45908759 - AluSx SINE Alu 0 306 1 230 91 0 68 chr13 73836566 73836610 -45908288 - L1MA5 LINE L1 -1 6299 6259 23 33 0 0 chr13 73837158 73837188 -45907710 + AT_rich Low_complexity Low_complexity 1 30 0 514 218 16 24 chr13 73837315 73837439 -45907459 - MER5B DNA MER1_type -1 177 55 1185 103 17 11 chr13 73837439 73837613 -45907285 - AluJb SINE Alu -16 296 122 256 250 36 0 chr13 73837613 73837669 -45907229 - MER5B DNA MER1_type -120 58 1 1607 171 76 0 chr13 73839145 73839420 -45905478 - AluJb SINE Alu -16 296 1 351 223 162 20 chr13 73839566 73839763 -45905135 - L1MB3 LINE L1 -2330 5478 5254 386 338 64 37 chr13 73839919 73839955 -45904943 - L1MB3 LINE L1 -1084 5062 5028 2404 93 0 0 chr13 73839955 73840256 -45904642 - AluSg1 SINE Alu -8 301 1 386 338 64 37 chr13 73840256 73840515 -45904383 - L1MB3 LINE L1 -1118 5028 4759 2320 94 0 7 chr13 73840608 73840906 -45903992 - AluSg1 SINE Alu -13 296 1 206 289 0 0 chr13 73841741 73841793 -45903105 + CT-rich Low_complexity Low_complexity 1 52 0 992 204 54 14 chr13 73841793 73842014 -45902884 - AluJo SINE Alu -10 302 73 1755 83 0 0 chr13 73842160 73842378 -45902520 - AluY SINE Alu -10 301 84 466 311 111 34 chr13 73842425 73842573 -45902325 - HAL1 LINE L1 -1319 1188 1053 1729 149 50 17 chr13 73842573 73842874 -45902024 - AluJb SINE Alu -1 311 1 466 311 111 34 chr13 73842874 73843076 -45901822 - HAL1 LINE L1 -1454 1053 811 1382 161 22 62 chr13 73843106 73843380 -45901518 - AluJb SINE Alu -15 297 35 25 75 0 0 chr13 73843587 73843640 -45901258 + AT_rich Low_complexity Low_complexity 1 53 0 1286 221 24 48 chr13 73843732 73843908 -45900990 - AluJb SINE Alu -19 283 115 2482 67 0 0 chr13 73843908 73844206 -45900692 + AluY SINE Alu 1 298 -13 1286 221 24 48 chr13 73844206 73844319 -45900579 - AluJb SINE Alu -187 115 1 186 43 0 0 chr13 73844624 73844647 -45900251 + (ATG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr13 73845049 73845071 -45899827 + AT_rich Low_complexity Low_complexity 1 22 0 2231 114 0 0 chr13 73845071 73845360 -45899538 - AluSx SINE Alu -23 289 1 2352 84 0 29 chr13 73845379 73845687 -45899211 - AluSx SINE Alu -12 300 2 2227 134 0 0 chr13 73845688 73845994 -45898904 - AluSx SINE Alu -6 306 1 238 290 40 20 chr13 73846023 73846123 -45898775 - L1MC5 LINE L1 -48 7913 7812 2513 165 27 118 chr13 73846126 73846824 -45898074 - L1MB8 LINE L1 -6 6172 5538 2145 130 0 3 chr13 73846870 73847171 -45897727 - AluSx SINE Alu -12 300 1 341 293 106 0 chr13 73847625 73847748 -45897150 - MIR SINE MIR -10 252 117 2490 82 0 0 chr13 73847765 73848071 -45896827 + AluSc SINE Alu 1 306 -3 234 119 60 60 chr13 73848071 73848287 -45896611 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 371 313 119 62 chr13 73848423 73848825 -45896073 - L3 LINE CR1 -8 1569 1145 2808 16 0 3 chr13 73848935 73849249 -45895649 + AluYb8 SINE Alu 1 313 -5 1682 173 6 40 chr13 73849735 73850058 -45894840 - AluJo SINE Alu 0 312 1 2075 84 6 59 chr13 73850357 73850680 -45894218 - AluY SINE Alu -5 306 1 206 271 176 12 chr13 73851335 73851420 -45893478 + MIR SINE MIR 113 211 -51 1501 160 112 0 chr13 73852612 73852880 -45892018 - AluJo SINE Alu -14 298 1 201 338 15 15 chr13 73853240 73853308 -45891590 - L2 LINE L2 -4 3268 3201 1904 169 13 0 chr13 73853461 73853768 -45891130 - AluJb SINE Alu -1 311 1 454 292 62 14 chr13 73853870 73854014 -45890884 - MIR SINE MIR -75 187 37 212 356 139 9 chr13 73854142 73854257 -45890641 + L2 LINE L2 1117 1246 -2068 539 355 166 35 chr13 73854338 73854619 -45890279 + L2 LINE L2 1390 1633 -1681 2019 114 0 24 chr13 73854619 73854963 -45889935 - AluSx SINE Alu 0 337 1 539 355 166 35 chr13 73854963 73855095 -45889803 + L2 LINE L2 1633 1746 -1568 1961 129 3 35 chr13 73855095 73855412 -45889486 - AluJb SINE Alu -5 307 1 539 355 166 35 chr13 73855412 73855982 -45888916 + L2 LINE L2 1746 2544 -770 2258 89 3 10 chr13 73855982 73856284 -45888614 - AluY SINE Alu -11 300 1 539 355 166 35 chr13 73856284 73856426 -45888472 + L2 LINE L2 2544 2666 -648 1445 239 7 0 chr13 73856720 73857013 -45887885 - AluJo SINE Alu -17 295 1 281 319 58 14 chr13 73857533 73857671 -45887227 + MIR SINE MIR 81 224 -38 2088 109 0 11 chr13 73858418 73858750 -45886148 + AluSx SINE Alu 1 329 0 400 224 95 9 chr13 73858926 73859042 -45885856 - MER96 DNA MER1_type? -49 126 1 225 209 0 35 chr13 73859548 73859634 -45885264 + CT-rich Low_complexity Low_complexity 2 84 0 1072 185 0 0 chr13 73859636 73859809 -45885089 - FAM SINE Alu -2 173 1 2009 143 7 3 chr13 73860571 73860871 -45884027 + AluSx SINE Alu 1 301 -11 1223 226 18 76 chr13 73860960 73861320 -45883578 + L1ME1 LINE L1 5485 5800 -366 478 83 0 0 chr13 73861320 73861380 -45883518 + AluS SINE Alu 14 73 -240 1223 226 18 76 chr13 73861380 73861723 -45883175 + L1ME1 LINE L1 5800 6161 -5 253 264 189 0 chr13 73861758 73861864 -45883034 + MIR SINE MIR 66 191 -71 384 130 52 35 chr13 73862524 73862626 -45882272 + T-rich Low_complexity Low_complexity 4 110 -10 1061 201 0 0 chr13 73862626 73862800 -45882098 - FAM SINE Alu -1 174 1 384 130 52 35 chr13 73862800 73862812 -45882086 + T-rich Low_complexity Low_complexity 110 120 0 2309 95 0 0 chr13 73863248 73863544 -45881354 - AluSx SINE Alu -16 296 1 1572 175 21 4 chr13 73863594 73863925 -45880973 + AluJo SINE Alu 1 336 0 275 292 18 76 chr13 73864091 73864267 -45880631 + MIR SINE MIR 22 191 -67 330 67 0 0 chr13 73864699 73864744 -45880154 + (CA)n Simple_repeat Simple_repeat 1 45 0 190 259 185 28 chr13 73866055 73866163 -45878735 - MIR SINE MIR -6 256 132 289 271 8 82 chr13 73866737 73866859 -45878039 - MIR SINE MIR 0 262 150 1397 151 46 46 chr13 73866874 73867133 -45877765 - AluJb SINE Alu -8 304 46 39 22 0 0 chr13 73867202 73867248 -45877650 + AT_rich Low_complexity Low_complexity 1 46 0 598 132 5 193 chr13 73867251 73867325 -45877573 - MER3 DNA MER1_type 2 164 78 2300 118 0 0 chr13 73867325 73867654 -45877244 + AluSq SINE Alu 1 329 0 598 132 5 193 chr13 73867654 73867728 -45877170 - MER3 DNA MER1_type -84 78 57 2491 48 3 0 chr13 73867728 73868022 -45876876 - AluY SINE Alu -16 295 1 598 132 5 193 chr13 73868022 73868067 -45876831 - MER3 DNA MER1_type -105 57 5 23 33 0 0 chr13 73868150 73868180 -45876718 + AT_rich Low_complexity Low_complexity 1 30 0 305 248 16 78 chr13 73868181 73868310 -45876588 - L1MC5 LINE L1 -69 7892 7772 375 319 21 28 chr13 73868355 73868496 -45876402 + MIR SINE MIR 2 141 -121 2229 113 7 0 chr13 73868692 73868984 -45875914 + AluSg SINE Alu 1 294 -16 23 24 0 24 chr13 73868989 73869010 -45875888 + AT_rich Low_complexity Low_complexity 1 22 -18 2176 121 0 0 chr13 73869010 73869299 -45875599 - AluSx SINE Alu -23 289 1 23 24 0 24 chr13 73869299 73869318 -45875580 + AT_rich Low_complexity Low_complexity 22 40 0 2276 90 10 0 chr13 73870844 73871145 -45873753 - AluSx SINE Alu -8 304 1 26 0 0 0 chr13 73871146 73871172 -45873726 + AT_rich Low_complexity Low_complexity 1 26 0 3309 186 53 21 chr13 73871430 73872304 -45872594 - L1MB4 LINE L1 -21 6159 5314 180 111 0 0 chr13 73872304 73872331 -45872567 + (CTTA)n Simple_repeat Simple_repeat 2 28 0 2193 109 0 0 chr13 73872331 73872614 -45872284 - AluSx SINE Alu -29 283 1 3309 186 53 21 chr13 73872614 73873307 -45871591 - L1MB4 LINE L1 -866 5314 4430 1706 148 7 11 chr13 73873307 73873577 -45871321 - AluJo SINE Alu -8 304 36 3309 186 53 21 chr13 73873577 73873698 -45871200 - L1MB4 LINE L1 -1750 4430 4314 220 348 25 17 chr13 73874643 73874761 -45870137 - L2 LINE L2 -2231 1083 965 215 173 19 19 chr13 73874867 73874919 -45869979 + A-rich Low_complexity Low_complexity 2 53 0 1019 141 37 18 chr13 73875514 73875677 -45869221 - AluJb SINE Alu -23 289 124 2147 124 10 10 chr13 73876630 73876937 -45867961 + AluSx SINE Alu 1 307 -5 216 184 20 20 chr13 73876974 73877023 -45867875 + MER5A DNA MER1_type 85 133 -56 674 225 26 146 chr13 73877596 73877938 -45866960 - AluJo SINE Alu 0 302 2 1392 166 14 81 chr13 73877944 73878240 -45866658 - AluJb SINE Alu -11 301 26 5767 75 19 7 chr13 73878254 73879103 -45865795 - L1PB1 LINE L1 0 6151 5293 291 310 149 16 chr13 73879183 73879438 -45865460 - L2 LINE L2 -1144 2170 1882 183 80 0 0 chr13 73879566 73879591 -45865307 + (CA)n Simple_repeat Simple_repeat 1 25 0 219 69 0 0 chr13 73880296 73880325 -45864573 + (TG)n Simple_repeat Simple_repeat 2 30 0 324 48 0 0 chr13 73880520 73880562 -45864336 + (CA)n Simple_repeat Simple_repeat 1 42 0 2834 291 47 30 chr13 73881025 73882697 -45862201 + L1PBa LINE L1 6 1643 -5220 * 3138 166 33 39 chr13 73882692 73883568 -45861330 + L1PBb LINE L1 333 1204 -5000 2095 130 0 58 chr13 73883572 73883902 -45860996 + AluSx SINE Alu 1 311 -1 1117 155 61 42 chr13 73883928 73884141 -45860757 + AluSx SINE Alu 1 217 -95 620 129 0 10 chr13 73884141 73884242 -45860656 + L1MC1 LINE L1 6017 6116 -217 575 160 38 0 chr13 73884259 73884365 -45860533 - L1MC1 LINE L1 -341 5992 5883 611 227 17 0 chr13 73884510 73884629 -45860269 - MIR SINE MIR -120 142 22 621 233 52 38 chr13 73885043 73885253 -45859645 + L2 LINE L2 3101 3313 0 394 299 30 12 chr13 73886138 73886305 -45858593 - MER112 DNA MER1_type -89 171 2 2489 80 0 3 chr13 73886309 73886622 -45858276 + AluSx SINE Alu 1 312 0 2384 121 21 13 chr13 73886935 73887307 -45857591 + THE1C LTR MaLR 1 375 0 9523 119 23 26 chr13 73887307 73887686 -45857212 + THE1C-int LTR MaLR 1 380 -1200 4693 55 18 3 chr13 73887686 73888287 -45856611 - L1PA7 LINE L1 0 6154 5545 9523 119 23 26 chr13 73888287 73889492 -45855406 + THE1C-int LTR MaLR 380 1580 0 2593 97 16 8 chr13 73889492 73889864 -45855034 + THE1C LTR MaLR 1 375 0 4023 142 39 0 chr13 73890282 73890978 -45853920 + L1PA16 LINE L1 5386 6108 -58 1206 126 0 0 chr13 73890981 73891148 -45853750 + AluSg/x SINE Alu 121 287 -23 336 66 16 33 chr13 73891162 73891223 -45853675 + L1PA16 LINE L1 6104 6163 -3 23 0 0 0 chr13 73891384 73891407 -45853491 + AT_rich Low_complexity Low_complexity 1 23 0 2169 114 7 10 chr13 73891454 73891761 -45853137 - AluSx SINE Alu -6 306 1 429 283 67 28 chr13 73891912 73892092 -45852806 - MIR SINE MIR 0 262 76 1565 141 70 6 chr13 73892438 73892750 -45852148 - L1MA4 LINE L1 -6 6294 5963 2121 142 0 0 chr13 73892912 73893207 -45851691 - AluSx SINE Alu -17 295 1 466 218 157 0 chr13 73893346 73893493 -45851405 + HsTC2 DNA Tc2 146 315 -1583 364 191 78 57 chr13 73893500 73893641 -45851257 + HsTC2 DNA Tc2 1709 1852 -46 3043 271 79 25 chr13 73894703 73896156 -45848742 + L1ME1 LINE L1 107 1637 -4759 2766 180 26 9 chr13 73896159 73896704 -45848194 + L1MB5 LINE L1 5621 6174 0 3703 191 54 17 chr13 73896739 73897745 -45847153 + L1MB5 LINE L1 5134 6174 0 1650 211 56 50 chr13 73897861 73898098 -45846800 + L1ME1 LINE L1 1627 1861 -4535 2128 114 21 0 chr13 73898098 73898388 -45846510 - AluSq SINE Alu -17 296 1 1650 211 56 50 chr13 73898388 73898843 -45846055 + L1ME1 LINE L1 1861 2323 -4073 3358 219 74 48 chr13 73898937 73899590 -45845308 + L1ME1 LINE L1 4516 5151 -1084 1635 145 14 41 chr13 73899590 73899880 -45845018 + AluJo SINE Alu 1 282 -30 266 0 29 0 chr13 73899883 73899917 -45844981 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3358 219 74 48 chr13 73899917 73900656 -45844242 + L1ME1 LINE L1 5152 5983 -252 2050 125 0 0 chr13 73900656 73900944 -45843954 + AluSg SINE Alu 15 302 -8 3358 219 74 48 chr13 73900944 73901199 -45843699 + L1ME1 LINE L1 5983 6230 -5 1522 118 4 4 chr13 73901410 73901639 -45843259 + AluSg/x SINE Alu 82 310 0 385 271 43 43 chr13 73901916 73902104 -45842794 - L1MC5 LINE L1 -54 7907 7720 2133 126 0 3 chr13 73902245 73902546 -45842352 - AluSx SINE Alu -12 300 1 597 195 41 16 chr13 73902548 73902671 -45842227 - AluJo/FLAM SINE Alu -176 126 1 27 49 0 0 chr13 73902721 73902762 -45842136 + AT_rich Low_complexity Low_complexity 1 41 0 770 144 89 0 chr13 73902901 73903047 -45841851 + L1ME1 LINE L1 5669 5827 -339 1497 215 50 24 chr13 73903060 73903437 -45841461 - MER63B DNA MER1_type -49 387 1 1798 170 6 10 chr13 73903683 73903995 -45840903 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr13 73904036 73904058 -45840840 + AT_rich Low_complexity Low_complexity 1 22 0 240 35 0 0 chr13 73904178 73904207 -45840691 + (TA)n Simple_repeat Simple_repeat 2 30 0 1805 150 7 3 chr13 73905766 73906053 -45838845 + AluJo SINE Alu 1 288 -24 858 237 11 0 chr13 73906264 73906454 -45838444 - L1MB7 LINE L1 -11 6173 5982 2248 99 0 0 chr13 73907187 73907481 -45837417 + AluSq SINE Alu 2 295 -18 804 115 0 0 chr13 73907869 73907991 -45836907 + (TA)n Simple_repeat Simple_repeat 2 123 0 1499 135 0 82 chr13 73908282 73908397 -45836501 + AluSx SINE Alu 44 167 -145 2276 73 7 7 chr13 73908397 73908700 -45836198 - AluY SINE Alu -6 305 3 1499 135 0 82 chr13 73908700 73908866 -45836032 + AluSx SINE Alu 167 302 -10 214 358 230 5 chr13 73909259 73909463 -45835435 - L2 LINE L2 -463 2851 2602 406 196 46 98 chr13 73909524 73909718 -45835180 + Charlie7 DNA MER1_type 2429 2612 0 531 96 0 12 chr13 73909726 73909809 -45835089 - Charlie5 DNA MER1_type 0 2624 2543 920 203 38 4 chr13 73909809 73910045 -45834853 + L1ME4a LINE L1 4959 5202 -944 2423 67 17 0 chr13 73910084 73910383 -45834515 + AluSq SINE Alu 1 304 -9 391 236 9 0 chr13 73910405 73910515 -45834383 + L1ME4a LINE L1 5188 5298 -848 236 245 0 0 chr13 73910515 73910564 -45834334 + L2 LINE L2 3224 3272 0 407 288 98 11 chr13 73910582 73910766 -45834132 - L1MB7 LINE L1 -2289 5519 5320 1322 207 25 7 chr13 73911194 73911474 -45833424 - AluJb SINE Alu -15 297 13 2052 127 3 0 chr13 73911952 73912243 -45832655 - AluSq SINE Alu -21 292 1 1416 178 50 29 chr13 73913648 73913929 -45830969 + AluJo SINE Alu 1 287 -15 244 315 42 7 chr13 73914307 73914450 -45830448 + L1ME4a LINE L1 5808 5955 -166 1938 129 3 46 chr13 73914513 73914838 -45830060 + AluSx SINE Alu 1 311 -1 1000 188 0 6 chr13 73915109 73915285 -45829613 - FAM SINE Alu 0 175 1 245 235 29 29 chr13 73915462 73915530 -45829368 + L2 LINE L2 3245 3312 -1 1736 177 3 22 chr13 73915924 73916240 -45828658 - AluJb SINE Alu -2 310 1 2253 103 3 0 chr13 73916927 73917219 -45827679 + AluSx SINE Alu 6 298 -14 2107 123 0 23 chr13 73917234 73917542 -45827356 + AluSx SINE Alu 3 303 -9 1849 154 35 38 chr13 73917918 73918263 -45826635 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr13 73918577 73918598 -45826300 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 73918729 73918751 -45826147 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 73919501 73919527 -45825371 + AT_rich Low_complexity Low_complexity 1 26 0 2196 89 0 10 chr13 73919527 73919819 -45825079 - AluSq SINE Alu -24 289 1 736 225 151 31 chr13 73920728 73920986 -45823912 + MER2 DNA MER2_type 57 345 0 1757 158 18 4 chr13 73921046 73921324 -45823574 + AluJo SINE Alu 1 282 -30 1523 161 61 4 chr13 73922150 73922430 -45822468 - AluJo SINE Alu -16 296 1 396 184 27 162 chr13 73922659 73922844 -45822054 - L1ME2 LINE L1 -45 6119 5960 28 0 0 0 chr13 73922844 73922872 -45822026 + AT_rich Low_complexity Low_complexity 1 28 0 288 148 98 0 chr13 73922883 73922944 -45821954 - L1ME2 LINE L1 -194 5970 5904 287 143 57 71 chr13 73922945 73923085 -45821813 + (TATAA)n Simple_repeat Simple_repeat 2 139 0 1268 256 150 15 chr13 73923093 73923632 -45821266 - L1ME2 LINE L1 -298 5872 5261 816 216 25 20 chr13 73923635 73923834 -45821064 - MLT1D LTR MaLR -3 502 303 242 139 0 0 chr13 73923826 73923862 -45821036 - MLT1E2 LTR MaLR -567 59 24 * 354 136 37 12 chr13 73923865 73923946 -45820952 + CT-rich Low_complexity Low_complexity 2 84 0 773 181 31 0 chr13 73923950 73924077 -45820821 - FLAM_C SINE Alu -1 132 2 2189 247 199 20 chr13 73924183 73924720 -45820178 - L1ME2 LINE L1 -878 5268 4828 877 213 0 0 chr13 73924720 73924894 -45820004 - FAM SINE Alu -1 174 1 2189 247 199 20 chr13 73924894 73925469 -45819429 - L1ME2 LINE L1 -1318 4828 3957 233 277 141 76 chr13 73925537 73925721 -45819177 - L2 LINE L2 -454 2860 2665 21 0 0 0 chr13 73925984 73926005 -45818893 + AT_rich Low_complexity Low_complexity 1 21 0 1460 92 15 5 chr13 73926134 73926340 -45818558 + AluSp SINE Alu 1 208 -105 192 389 130 0 chr13 73926609 73926717 -45818181 + L2 LINE L2 3099 3220 -52 1795 148 30 13 chr13 73926904 73927207 -45817691 - AluSq SINE Alu -2 311 4 441 246 262 11 chr13 73928281 73928468 -45816430 + MIR SINE MIR 1 234 -28 417 333 50 0 chr13 73929943 73930063 -45814835 - L2 LINE L2 -3 3269 3144 240 273 61 0 chr13 73930224 73930290 -45814608 - MER112 DNA MER1_type -7 253 184 23 0 0 0 chr13 73930454 73930477 -45814421 + AT_rich Low_complexity Low_complexity 1 23 0 2030 131 0 13 chr13 73930612 73930910 -45813988 + AluSg SINE Alu 2 295 -15 236 309 43 75 chr13 73930910 73931004 -45813894 + MIR SINE MIR 24 114 -148 2157 139 0 0 chr13 73931237 73931547 -45813351 + AluSx SINE Alu 2 311 -1 198 208 143 91 chr13 73932047 73932124 -45812774 - MIR SINE MIR -84 178 98 857 214 30 10 chr13 73932317 73932518 -45812380 - MER3 DNA MER1_type -4 205 1 499 248 110 50 chr13 73932720 73932778 -45812120 - L1ME4a LINE L1 -79 6042 5989 1996 118 7 10 chr13 73932778 73933075 -45811823 + AluSx SINE Alu 1 296 -16 499 248 110 50 chr13 73933075 73933416 -45811482 - L1ME4a LINE L1 -132 5989 5619 14423 199 32 14 chr13 73933591 73933953 -45810945 - L1PB1 LINE L1 -8 6859 6505 207 100 0 0 chr13 73933953 73933983 -45810915 + (CA)n Simple_repeat Simple_repeat 2 31 0 14423 199 32 14 chr13 73933983 73934276 -45810622 - L1PB1 LINE L1 -362 6505 6219 2072 109 14 0 chr13 73934276 73934570 -45810328 - AluSq SINE Alu -15 298 1 14423 199 32 14 chr13 73934570 73934924 -45809974 - L1PB1 LINE L1 -648 6219 5873 2073 128 3 0 chr13 73934924 73935236 -45809662 - AluSp SINE Alu 0 313 1 14423 199 32 14 chr13 73935236 73937110 -45807788 - L1PB1 LINE L1 -994 5873 4036 2094 106 3 39 chr13 73937110 73937422 -45807476 - AluSp SINE Alu -12 301 1 14423 199 32 14 chr13 73937422 73939922 -45804976 - L1PB1 LINE L1 -2831 4036 1366 879 176 24 43 chr13 73939914 73940124 -45804774 - L1PB1 LINE L1 -6006 857 652 * 329 308 8 0 chr13 73940121 73940251 -45804647 - L1PB1 LINE L1 -6664 199 69 * 29 28 0 0 chr13 73940383 73940419 -45804479 + AT_rich Low_complexity Low_complexity 1 36 0 72 47 0 0 chr13 73940628 73940735 -45804163 + AT_rich Low_complexity Low_complexity 1 107 0 1629 142 29 15 chr13 73940849 73941123 -45803775 - AluSx SINE Alu -23 289 12 306 0 0 0 chr13 73941170 73941204 -45803694 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 48 71 0 chr13 73941204 73941246 -45803652 + (TA)n Simple_repeat Simple_repeat 2 46 0 245 310 49 35 chr13 73941249 73941452 -45803446 - L1M4 LINE L1 -1139 5007 4802 258 257 18 9 chr13 73941729 73941838 -45803060 - L1M4 LINE L1 -1677 4469 4360 189 0 0 0 chr13 73941897 73941918 -45802980 + (T)n Simple_repeat Simple_repeat 1 21 0 239 316 134 69 chr13 73942937 73943150 -45801748 - L2 LINE L2 0 3272 3041 318 50 0 0 chr13 73943150 73943190 -45801708 + (TG)n Simple_repeat Simple_repeat 2 41 0 239 316 134 69 chr13 73943190 73943207 -45801691 - L2 LINE L2 -231 3041 3027 377 274 127 33 chr13 73943277 73943451 -45801447 - MIR SINE MIR -54 208 16 26 50 0 0 chr13 73943710 73943750 -45801148 + AT_rich Low_complexity Low_complexity 1 40 0 3367 172 69 0 chr13 73943785 73944464 -45800434 - L1MB7 LINE L1 -16 6168 5443 21 71 0 0 chr13 73946817 73946859 -45798039 + AT_rich Low_complexity Low_complexity 1 42 0 927 135 0 0 chr13 73946925 73947058 -45797840 - FLAM_C SINE Alu -10 133 1 427 256 100 85 chr13 73947097 73947639 -45797259 - L1ME4a LINE L1 -107 6014 5465 398 313 137 14 chr13 73947815 73948093 -45796805 + MARNA DNA Mariner 234 545 -41 26 50 0 0 chr13 73948319 73948359 -45796539 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr13 73948789 73948814 -45796084 + AT_rich Low_complexity Low_complexity 1 25 0 319 337 11 11 chr13 73950192 73950287 -45794611 + MER5B DNA MER1_type 25 119 -59 250 364 50 10 chr13 73950350 73950449 -45794449 + L2 LINE L2 3190 3292 -21 22 35 0 0 chr13 73951220 73951249 -45793649 + AT_rich Low_complexity Low_complexity 1 29 0 936 92 138 0 chr13 73951861 73952013 -45792885 - L1MA3 LINE L1 -2 6303 6131 231 114 0 0 chr13 73952013 73952048 -45792850 + (TATG)n Simple_repeat Simple_repeat 2 36 0 681 133 124 0 chr13 73952049 73952162 -45792736 - AluSq/x SINE Alu -183 129 3 1656 142 11 8 chr13 73952188 73952456 -45792442 + AluSx SINE Alu 1 269 -43 6287 131 15 29 chr13 73952517 73954237 -45790661 - L1MA3 LINE L1 -177 6128 4436 2260 112 0 0 chr13 73954237 73954540 -45790358 - AluSg SINE Alu -7 303 1 6287 131 15 29 chr13 73954540 73954760 -45790138 - L1MA3 LINE L1 -1869 4436 4214 643 165 0 0 chr13 73954761 73954858 -45790040 + U6 snRNA snRNA 1 97 -10 734 212 0 0 chr13 73954878 73955015 -45789883 - L1MA3 LINE L1 -1920 4226 4090 375 264 154 0 chr13 73955020 73955130 -45789768 - MIR SINE MIR -113 149 23 263 95 119 0 chr13 73955132 73955174 -45789724 + L1PA16 LINE L1 6110 6156 -10 537 256 217 0 chr13 73955342 73955522 -45789376 + MIR SINE MIR 23 241 -21 1621 196 31 15 chr13 73955959 73956286 -45788612 - MER58B DNA MER1_type -9 332 1 9935 223 65 23 chr13 73956772 73957927 -45786971 + L1MC1 LINE L1 2142 3248 -3154 2389 96 3 0 chr13 73957927 73958239 -45786659 + AluSp SINE Alu 1 313 0 9935 223 65 23 chr13 73958239 73961207 -45783691 + L1MC1 LINE L1 3248 6389 -13 2820 221 60 60 chr13 73961235 73962283 -45782615 - L1ME1 LINE L1 -4 6162 4948 1935 107 34 14 chr13 73962283 73962574 -45782324 + AluSq SINE Alu 1 297 -16 2820 221 60 60 chr13 73962574 73963278 -45781620 - L1ME1 LINE L1 -1218 4948 4245 195 353 64 56 chr13 73963465 73963714 -45781184 + L2 LINE L2 2225 2475 -839 643 237 162 22 chr13 73963759 73963987 -45780911 - MIR SINE MIR -1 261 2 2164 115 0 0 chr13 73964372 73964668 -45780230 + AluSg SINE Alu 1 296 -14 192 40 0 0 chr13 73964671 73964696 -45780202 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 24 53 0 0 chr13 73965969 73966007 -45778891 + AT_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr13 73966318 73966346 -45778552 + AT_rich Low_complexity Low_complexity 1 28 0 6018 39 0 0 chr13 73966346 73967064 -45777834 - L1PA3 LINE L1 0 6155 5438 724 167 0 36 chr13 73967136 73967274 -45777624 - FLAM_C SINE Alu 0 133 1 1442 206 3 26 chr13 73967648 73967958 -45776940 - AluJo SINE Alu -9 303 1 2136 119 42 31 chr13 73968583 73968943 -45775955 - THE1B LTR MaLR 0 364 1 1065 238 57 37 chr13 73969630 73970088 -45774810 + MLT1C LTR MaLR 1 467 0 360 366 21 14 chr13 73970196 73970338 -45774560 + MIR3 SINE MIR 2 144 -64 252 231 33 44 chr13 73970696 73970787 -45774111 + MIR SINE MIR 173 262 0 189 171 0 0 chr13 73971405 73971440 -45773458 + (CA)n Simple_repeat Simple_repeat 2 36 0 2325 65 0 26 chr13 73972300 73972607 -45772291 - AluY SINE Alu -12 299 1 21 36 0 0 chr13 73972859 73972887 -45772011 + AT_rich Low_complexity Low_complexity 1 28 0 361 299 117 11 chr13 73972993 73973257 -45771641 - HAL1b LINE L1 -501 847 556 266 336 102 15 chr13 73973345 73973482 -45771416 + L2 LINE L2 3164 3312 -1 540 240 16 8 chr13 73973526 73973651 -45771247 - FLAM_A SINE Alu -7 126 1 266 298 94 38 chr13 73973660 73973979 -45770919 - HAL1b LINE L1 -946 402 66 1364 139 0 5 chr13 73974168 73974370 -45770528 + AluSx SINE Alu 59 259 -53 920 145 0 0 chr13 73974689 73974820 -45770078 - AluJb SINE Alu -176 136 6 21 0 0 0 chr13 73974828 73974849 -45770049 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr13 73975623 73975667 -45769231 + (CA)n Simple_repeat Simple_repeat 2 45 0 284 330 214 22 chr13 73975797 73976064 -45768834 - L3 LINE CR1 -17 1560 1243 654 363 133 4 chr13 73976298 73976786 -45768112 - L3 LINE CR1 -728 849 299 760 260 28 67 chr13 73977517 73977624 -45767274 - L1MC/D LINE L1 -589 5579 5469 2029 124 0 0 chr13 73977624 73977907 -45766991 + AluSx SINE Alu 1 283 -29 330 26 0 0 chr13 73977913 73977952 -45766946 + (CA)n Simple_repeat Simple_repeat 2 40 0 760 260 28 67 chr13 73977952 73978107 -45766791 - L1MC/D LINE L1 -544 5624 5464 2178 126 0 3 chr13 73978109 73978419 -45766479 - AluSq SINE Alu -4 309 1 306 256 124 66 chr13 73978504 73978777 -45766121 - L1MC/D LINE L1 -913 5233 4945 249 174 0 0 chr13 73979769 73979815 -45765083 - MIR SINE MIR -38 224 179 1702 145 8 0 chr13 73980319 73980574 -45764324 - AluSx SINE Alu -22 290 34 246 197 182 0 chr13 73980861 73980927 -45763971 + L1MD3 LINE L1 7908 7985 -10 1272 176 226 24 chr13 73981161 73981586 -45763312 + L1ME2 LINE L1 5543 6053 -111 223 75 0 57 chr13 73981648 73981701 -45763197 + (AAATG)n Simple_repeat Simple_repeat 3 52 0 340 289 33 16 chr13 73982157 73982278 -45762620 - MIR SINE MIR -48 214 92 363 335 84 48 chr13 73982329 73982687 -45762211 - L2 LINE L2 -2244 1070 700 403 301 116 6 chr13 73982975 73983148 -45761750 - MIR SINE MIR -70 192 1 21 0 0 0 chr13 73983170 73983191 -45761707 + AT_rich Low_complexity Low_complexity 1 21 0 7078 180 129 27 chr13 73983324 73984917 -45759981 - MER52A LTR ERV1 0 1755 1 182 243 0 0 chr13 73985660 73985697 -45759201 - L2 LINE L2 -240 3032 2996 1038 255 9 9 chr13 73986003 73986234 -45758664 - MIR SINE MIR -24 238 8 502 292 0 0 chr13 73986956 73987086 -45757812 + MER94 DNA DNA 1 130 -4 2313 45 45 0 chr13 73987126 73987412 -45757486 - AluY SINE Alu -12 299 1 194 33 67 0 chr13 73987840 73987870 -45757028 + A-rich Low_complexity Low_complexity 2 33 0 1100 192 177 84 chr13 73988364 73988698 -45756200 + MSTD LTR MaLR 1 396 0 567 228 94 35 chr13 73989041 73989243 -45755655 - L2 LINE L2 0 3313 3100 1495 255 310 23 chr13 73989269 73990147 -45754751 - L2 LINE L2 -338 2976 1847 5472 85 24 37 chr13 73990150 73991019 -45753879 + L1PA8 LINE L1 5331 6172 0 665 153 0 51 chr13 73991056 73991174 -45753724 + FLAM_C SINE Alu 3 114 -19 450 0 0 0 chr13 73991175 73991225 -45753673 + (TG)n Simple_repeat Simple_repeat 2 51 0 2277 45 7 3 chr13 73991324 73991611 -45753287 + L1PA7 LINE L1 5864 6151 -3 335 309 73 22 chr13 73991787 73991923 -45752975 + MIR SINE MIR 116 258 -4 2158 111 0 0 chr13 73992242 73992530 -45752368 + AluSq SINE Alu 1 288 -25 311 336 68 7 chr13 73992702 73992848 -45752050 + L2 LINE L2 2603 2757 -557 26 0 0 0 chr13 73993082 73993108 -45751790 + AT_rich Low_complexity Low_complexity 1 26 0 467 268 57 67 chr13 73994108 73994176 -45750722 - MIR SINE MIR -56 206 139 1635 166 14 17 chr13 73994176 73994465 -45750433 - AluJb SINE Alu -24 288 1 467 268 57 67 chr13 73994465 73994600 -45750298 - MIR SINE MIR -123 139 7 2274 86 7 7 chr13 73995128 73995429 -45749469 + AluSx SINE Alu 1 301 -11 736 331 139 48 chr13 73996421 73997130 -45747768 + L2 LINE L2 2209 3033 -239 2709 124 38 2 chr13 73997130 73997549 -45747349 + MER57B LTR ERV1 1 434 0 736 331 139 48 chr13 73997549 73997813 -45747085 + L2 LINE L2 3033 3272 0 313 247 63 29 chr13 73998053 73998227 -45746671 + L1ME2 LINE L1 5781 5960 -204 22 35 0 0 chr13 73998711 73998740 -45746158 + AT_rich Low_complexity Low_complexity 1 29 0 2395 79 0 0 chr13 73999832 74000136 -45744762 - AluY SINE Alu -7 304 1 1552 172 40 30 chr13 74001314 74001610 -45743288 - AluJo SINE Alu -12 300 2 31076 99 14 13 chr13 74002069 74007678 -45737220 + L1PA7 LINE L1 779 6469 0 243 0 0 0 chr13 74007881 74007908 -45736990 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2311 113 0 3 chr13 74008405 74008715 -45736183 + AluSx SINE Alu 1 309 -3 39 50 0 0 chr13 74009797 74009857 -45735041 + AT_rich Low_complexity Low_complexity 1 60 0 276 137 0 20 chr13 74009898 74009949 -45734949 - FAM SINE Alu -1 174 125 968 181 24 39 chr13 74009949 74010154 -45734744 - AluJo SINE Alu -94 218 17 864 209 105 38 chr13 74010308 74010518 -45734380 + MER8 DNA MER2_type 12 235 -4 1934 214 55 95 chr13 74010584 74011387 -45733511 - L1MC4 LINE L1 -173 7869 7099 309 140 0 0 chr13 74011392 74011442 -45733456 + L1MB2 LINE L1 6083 6132 -39 449 248 15 15 chr13 74011467 74011604 -45733294 - L1MC4 LINE L1 -962 7080 6944 2032 118 10 20 chr13 74011637 74011933 -45732965 + AluSx SINE Alu 1 293 -19 586 175 113 98 chr13 74011992 74012186 -45732712 + L1MC4 LINE L1 6711 6907 -1135 243 263 26 0 chr13 74012228 74012304 -45732594 - L1ME LINE L1 -351 5819 5742 377 239 34 0 chr13 74012591 74012679 -45732219 - L1MC5 LINE L1 -60 7901 7811 987 172 6 12 chr13 74012839 74013002 -45731896 - FRAM SINE Alu -1 165 4 215 286 204 0 chr13 74013240 74013338 -45731560 - L2 LINE L2 0 3313 3196 222 292 55 0 chr13 74013406 74013487 -45731411 - MIR SINE MIR -65 143 67 206 211 0 0 chr13 74013909 74013947 -45730951 + MER5A DNA MER1_type 151 188 -1 277 283 242 0 chr13 74014403 74014502 -45730396 - L2 LINE L2 -9 3263 3141 380 298 112 19 chr13 74014888 74015049 -45729849 + L2 LINE L2 3118 3293 -20 211 355 21 11 chr13 74015245 74015338 -45729560 - L2 LINE L2 -5 3267 3174 381 309 261 5 chr13 74015663 74015870 -45729028 + MIR SINE MIR 3 262 0 267 241 214 32 chr13 74016306 74016428 -45728470 - MIR SINE MIR -61 147 17 * 317 331 114 42 chr13 74016413 74016676 -45728222 - L2 LINE L2 -1521 1793 1512 456 377 131 18 chr13 74016889 74017714 -45727184 - L2 LINE L2 -1842 1472 555 206 167 30 30 chr13 74017834 74017900 -45726998 + (TA)n Simple_repeat Simple_repeat 2 67 0 198 359 0 0 chr13 74018392 74018456 -45726442 + L2 LINE L2 3200 3263 -9 1671 144 13 70 chr13 74019279 74019592 -45725306 - AluJb SINE Alu -16 296 2 832 200 0 0 chr13 74020129 74020269 -45724629 + FRAM SINE Alu 6 145 -31 269 308 20 27 chr13 74020694 74020840 -45724058 - L1M4 LINE L1 -2332 3814 3670 233 222 45 74 chr13 74021144 74021320 -45723578 - L1M4 LINE L1 -3045 3101 2931 39 38 0 0 chr13 74021443 74021496 -45723402 + AT_rich Low_complexity Low_complexity 1 53 0 2332 94 7 0 chr13 74021501 74021798 -45723100 - AluSx SINE Alu -13 299 1 442 287 193 25 chr13 74022181 74022566 -45722332 + MLT1G LTR MaLR 91 555 0 724 159 106 71 chr13 74022974 74023144 -45721754 - AluSc SINE Alu -2 307 132 1343 134 40 22 chr13 74023145 74023369 -45721529 - AluSg/x SINE Alu 0 312 85 828 145 0 0 chr13 74023371 74023502 -45721396 - AluJo/FLAM SINE Alu -169 133 3 199 250 42 56 chr13 74023750 74023822 -45721076 + L3 LINE CR1 399 469 -1108 1915 151 23 0 chr13 74024334 74024633 -45720265 - AluSx SINE Alu -6 306 1 210 282 73 89 chr13 74024739 74024794 -45720104 + MER5A DNA MER1_type 20 74 -115 2301 89 0 13 chr13 74024794 74025096 -45719802 + AluY SINE Alu 1 298 -13 210 282 73 89 chr13 74025096 74025164 -45719734 + MER5A DNA MER1_type 74 141 -48 2224 110 10 7 chr13 74026065 74026375 -45718523 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr13 74026798 74026821 -45718077 + (A)n Simple_repeat Simple_repeat 1 23 0 1479 260 47 48 chr13 74027194 74027771 -45717127 + L1ME LINE L1 300 875 -5195 497 248 65 2 chr13 74027768 74027951 -45716947 + L1ME3A LINE L1 5625 5830 -340 * 2089 147 0 0 chr13 74028368 74028661 -45716237 - AluSx SINE Alu -19 293 1 209 219 0 47 chr13 74028724 74028788 -45716110 + T-rich Low_complexity Low_complexity 2 62 0 1768 194 56 24 chr13 74028858 74028967 -45715931 + L1MB2 LINE L1 5723 5827 -344 4330 64 20 26 chr13 74028967 74029579 -45715319 + L1PA7 LINE L1 5546 6153 -1 1768 194 56 24 chr13 74029579 74029882 -45715016 + L1MB2 LINE L1 5827 6148 -23 2366 90 0 0 chr13 74030512 74030813 -45714085 + AluY SINE Alu 1 301 -10 1131 141 0 0 chr13 74030813 74030976 -45713922 + AluSq SINE Alu 134 296 -17 483 227 153 88 chr13 74031181 74031397 -45713501 + MER39 LTR ERV1 1 230 -477 1284 169 96 73 chr13 74031418 74031761 -45713137 + MER39 LTR ERV1 357 707 0 210 158 0 0 chr13 74032674 74032712 -45712186 + A-rich Low_complexity Low_complexity 1 38 0 2766 253 118 15 chr13 74032714 74033601 -45711297 + L2 LINE L2 1698 2676 -638 180 206 0 0 chr13 74033682 74033716 -45711182 - L2 LINE L2 -15 3298 3265 1200 126 92 21 chr13 74033736 74033974 -45710924 - Tigger2 DNA MER2_type -3 2715 2461 4109 125 47 9 chr13 74034059 74034722 -45710176 - Tigger2 DNA MER2_type -2030 688 1 777 271 51 90 chr13 74034723 74035344 -45709554 + L2 LINE L2 2705 3309 -4 1881 162 0 0 chr13 74035618 74035914 -45708984 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr13 74036626 74036661 -45708237 + AT_rich Low_complexity Low_complexity 1 35 0 235 253 228 0 chr13 74036790 74036869 -45708029 - MIR SINE MIR -108 154 58 272 213 125 25 chr13 74036893 74036973 -45707925 + L2 LINE L2 3188 3275 -38 334 246 100 18 chr13 74037353 74037463 -45707435 + MER94 DNA DNA 16 134 0 871 298 90 49 chr13 74038226 74038709 -45706189 + L2 LINE L2 2794 3304 -9 319 299 34 41 chr13 74039401 74039548 -45705350 - MIR SINE MIR 0 262 117 976 183 30 68 chr13 74039583 74039818 -45705080 + Charlie1 DNA MER1_type 1 226 -2535 663 188 14 0 chr13 74039815 74039953 -45704945 + Charlie1 DNA MER1_type 2622 2761 0 * 543 243 71 12 chr13 74039976 74040145 -45704753 - L1MD2 LINE L1 -253 6106 5928 24 53 0 0 chr13 74040836 74040874 -45704024 + AT_rich Low_complexity Low_complexity 1 38 0 2785 89 3 0 chr13 74041128 74041489 -45703409 - THE1B LTR MaLR -2 362 1 2080 249 196 18 chr13 74041492 74042294 -45702604 + L2 LINE L2 1633 2577 -737 887 193 44 6 chr13 74042393 74042574 -45702324 + MER5A DNA MER1_type 1 188 -1 334 176 0 0 chr13 74043621 74043672 -45701226 + Alu SINE Alu 1 51 -248 1928 124 0 0 chr13 74043674 74043940 -45700958 - AluSx SINE Alu -46 266 1 2241 101 0 3 chr13 74044020 74044316 -45700582 + AluSx SINE Alu 1 295 -17 181 411 64 28 chr13 74044443 74044584 -45700314 + L2 LINE L2 2865 3010 -262 2172 100 0 0 chr13 74044600 74044916 -45699982 + AluY SINE Alu 1 316 0 460 294 261 29 chr13 74044960 74045385 -45699513 + L2 LINE L2 1611 1936 -1378 501 17 0 0 chr13 74045385 74045443 -45699455 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 460 294 261 29 chr13 74045443 74045489 -45699409 + L2 LINE L2 1936 1970 -1344 387 0 0 0 chr13 74045489 74045532 -45699366 + (TG)n Simple_repeat Simple_repeat 1 43 0 460 294 261 29 chr13 74045532 74045713 -45699185 + L2 LINE L2 1970 2483 -831 202 215 65 65 chr13 74045738 74045831 -45699067 + L2 LINE L2 2690 2782 -532 1147 191 35 9 chr13 74046051 74046281 -45698617 + MER46A DNA MER2_type 1 236 0 1825 145 4 7 chr13 74046479 74046755 -45698143 + AluJo SINE Alu 12 286 -26 450 319 74 63 chr13 74047229 74047596 -45697302 + MLT1J LTR MaLR 111 481 -30 473 293 110 16 chr13 74047656 74047847 -45697051 - L3 LINE CR1 -40 1537 1329 1936 131 30 13 chr13 74048002 74048300 -45696598 + AluSx SINE Alu 1 303 -9 212 264 0 47 chr13 74048646 74048775 -45696123 + (TAAA)n Simple_repeat Simple_repeat 4 126 0 227 170 0 43 chr13 74048832 74048879 -45696019 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 26 0 0 0 chr13 74048881 74048907 -45695991 + AT_rich Low_complexity Low_complexity 1 26 0 597 259 54 0 chr13 74048908 74049074 -45695824 + MER104 DNA Tc2 6 180 0 328 321 100 48 chr13 74049218 74049529 -45695369 + L1ME3A LINE L1 5618 5944 -226 309 267 318 6 chr13 74049801 74049977 -45694921 - MIR SINE MIR 0 262 32 340 258 75 33 chr13 74050403 74050523 -45694375 + MIR SINE MIR 21 145 -117 507 268 144 0 chr13 74050528 74050722 -45694176 - L2 LINE L2 -2 3311 3090 815 154 28 7 chr13 74050772 74050915 -45693983 + MLT1A1 LTR MaLR 17 162 -203 1060 150 12 0 chr13 74050915 74051088 -45693810 + AluSg/x SINE Alu 135 309 -3 1555 174 14 10 chr13 74051189 74051477 -45693421 - AluSx SINE Alu -23 289 1 205 40 0 0 chr13 74051481 74051506 -45693392 + (TTA)n Simple_repeat Simple_repeat 1 180 0 1531 111 17 38 chr13 74051506 74051742 -45693156 - AluSx SINE Alu -1 312 58 1552 148 35 67 chr13 74051743 74052087 -45692811 - L1MA8 LINE L1 -10 6281 5949 330 45 0 0 chr13 74053034 74053078 -45691820 + (CA)n Simple_repeat Simple_repeat 2 45 0 244 225 70 28 chr13 74055260 74055331 -45689567 - MIR SINE MIR -102 106 33 2458 97 0 0 chr13 74055600 74055908 -45688990 - AluSg SINE Alu -2 308 1 1637 187 24 35 chr13 74056357 74056726 -45688172 - MLT1A1 LTR MaLR 0 365 1 326 304 88 23 chr13 74057173 74057344 -45687554 + MIR SINE MIR 81 262 0 753 179 13 7 chr13 74058584 74058735 -45686163 - MLT1A1 LTR MaLR 0 365 214 472 295 123 72 chr13 74058920 74059070 -45685828 - L2 LINE L2 0 3272 3131 2483 146 24 16 chr13 74059070 74059496 -45685402 + MSTB1 LTR MaLR 1 429 -3 472 295 123 72 chr13 74059496 74059677 -45685221 - L2 LINE L2 -141 3131 2924 1306 150 115 24 chr13 74059887 74060174 -45684724 - THE1C LTR MaLR -62 313 1 880 262 60 28 chr13 74060269 74060521 -45684377 - MIR SINE MIR -1 261 2 3024 146 74 31 chr13 74060965 74061399 -45683499 + L1MC1 LINE L1 5546 6019 -314 2147 130 0 3 chr13 74061399 74061707 -45683191 + AluSx SINE Alu 1 307 -5 3024 146 74 31 chr13 74061707 74061921 -45682977 + L1MC1 LINE L1 6019 6222 -111 1199 135 65 0 chr13 74061921 74062106 -45682792 - AluSq SINE Alu -116 197 1 778 186 30 118 chr13 74062190 74062427 -45682471 + MLT1F1 LTR MaLR 375 564 -3 237 195 52 26 chr13 74062695 74062772 -45682126 - L1M1 LINE L1 -536 5767 5689 28 0 0 0 chr13 74063174 74063202 -45681696 + AT_rich Low_complexity Low_complexity 1 28 0 289 125 18 0 chr13 74063861 74063917 -45680981 - L1MD3 LINE L1 -11 7984 7928 971 121 13 6 chr13 74063918 74064075 -45680823 + MLT1A1 LTR MaLR 1 158 -207 2018 127 7 19 chr13 74064075 74064382 -45680516 + AluSg SINE Alu 1 303 -7 238 386 70 0 chr13 74064393 74064564 -45680334 - L3b LINE CR1 -193 1390 1208 5450 141 54 0 chr13 74064578 74065777 -45679121 - L1PA16 LINE L1 0 6166 4932 33 0 0 0 chr13 74065898 74065931 -45678967 + AT_rich Low_complexity Low_complexity 1 33 0 12408 150 58 11 chr13 74065932 74070636 -45674262 - L1PB1 LINE L1 -1 6866 1668 2195 131 0 0 chr13 74070636 74070934 -45673964 - AluSx SINE Alu -12 300 3 12408 150 58 11 chr13 74070934 74072021 -45672877 - L1PB1 LINE L1 -5199 1668 634 980 198 5 0 chr13 74072021 74072218 -45672680 - L1PB1 LINE L1 -6663 200 3 326 289 47 8 chr13 74072233 74072361 -45672537 + MIR SINE MIR 53 185 -77 1779 115 133 0 chr13 74073134 74073404 -45671494 + AluSx SINE Alu 1 306 -6 1801 126 70 0 chr13 74074113 74074384 -45670514 - AluSx SINE Alu -18 294 5 216 295 27 89 chr13 74074454 74074566 -45670332 - MIR SINE MIR -84 178 74 295 289 21 10 chr13 74074823 74074920 -45669978 + MIR SINE MIR 161 258 -4 4769 159 20 11 chr13 74076835 74077692 -45667206 - MER6 DNA MER2_type 0 865 1 325 155 175 10 chr13 74078238 74078335 -45666563 - L1MC4 LINE L1 -11 8031 7919 2390 97 0 0 chr13 74078356 74078665 -45666233 - AluSc SINE Alu 0 309 1 894 190 5 53 chr13 74078686 74078927 -45665971 - L1MC4 LINE L1 -96 7712 7604 338 373 23 73 chr13 74080877 74081177 -45663721 + L2 LINE L2 2987 3271 -1 40775 34 21 3 chr13 74081583 74087624 -45657274 - L1PA3 LINE L1 0 6155 1 455 305 40 7 chr13 74087625 74087776 -45657122 + L2 LINE L2 3158 3313 0 377 145 0 0 chr13 74088232 74088301 -45656597 + L1MA5A LINE L1 6210 6278 -19 207 0 0 0 chr13 74088312 74088335 -45656563 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 375 60 0 0 chr13 74088833 74088883 -45656015 + (TG)n Simple_repeat Simple_repeat 2 51 0 335 256 56 65 chr13 74089248 74089474 -45655424 + MIR SINE MIR 40 261 -1 902 294 16 4 chr13 74089834 74090082 -45654816 + MIR SINE MIR 11 261 -1 447 19 0 0 chr13 74091313 74091365 -45653533 + (TG)n Simple_repeat Simple_repeat 1 52 0 783 191 39 11 chr13 74091428 74091606 -45653292 - Tigger2 DNA MER2_type 0 2718 2536 2410 57 0 10 chr13 74091608 74091906 -45652992 - AluY SINE Alu -16 295 1 675 304 78 0 chr13 74092012 74092216 -45652682 + MIR SINE MIR 43 262 0 180 214 36 54 chr13 74092365 74092421 -45652477 - L2 LINE L2 -8 3305 3251 * 906 258 23 5 chr13 74092388 74092605 -45652293 - MIR SINE MIR -23 239 19 419 54 0 0 chr13 74094656 74094712 -45650186 + MADE1 DNA Mariner 1 56 -24 427 307 38 9 chr13 74095270 74095467 -45649431 + MIR SINE MIR 50 249 -13 224 276 53 0 chr13 74095482 74095558 -45649340 + L2 LINE L2 3188 3267 -5 348 293 80 32 chr13 74097298 74097486 -45647412 + MIR3 SINE MIR 5 201 -7 195 191 21 21 chr13 74097480 74097527 -45647371 + MIR SINE MIR 122 168 -94 * 471 176 0 0 chr13 74097552 74097643 -45647255 + (CATA)n Simple_repeat Simple_repeat 2 92 0 2756 112 38 10 chr13 74098152 74098570 -45646328 - MSTB1 LTR MaLR 0 432 3 840 264 164 52 chr13 74098692 74099212 -45645686 - MLT1K LTR MaLR -1 587 10 2375 94 0 0 chr13 74099526 74099824 -45645074 + AluSx SINE Alu 1 298 -14 222 194 0 0 chr13 74099850 74099886 -45645012 + polypurine Low_complexity Low_complexity 2 37 0 2212 128 0 3 chr13 74100679 74100984 -45643914 - AluSg SINE Alu -6 304 1 533 200 169 46 chr13 74101121 74101257 -45643641 - MER20 DNA MER1_type 0 219 50 225 0 0 0 chr13 74101257 74101282 -45643616 + (CCA)n Simple_repeat Simple_repeat 3 27 0 533 200 169 46 chr13 74101282 74101340 -45643558 - MER20 DNA MER1_type -169 50 1 1912 167 10 0 chr13 74101612 74101906 -45642992 + AluSx SINE Alu 1 297 -15 25 65 0 0 chr13 74101934 74101980 -45642918 + AT_rich Low_complexity Low_complexity 1 46 0 1445 184 4 22 chr13 74103165 74103432 -45641466 + AluJo SINE Alu 23 284 -28 290 227 38 114 chr13 74104289 74104421 -45640477 + MIR SINE MIR 112 233 -29 631 235 98 6 chr13 74104605 74104788 -45640110 - MER3 DNA MER1_type -9 200 1 333 331 44 33 chr13 74105243 74105462 -45639436 - MIR SINE MIR -14 248 34 1705 166 39 0 chr13 74107556 74107839 -45637059 - AluSx SINE Alu -18 294 1 250 263 12 0 chr13 74110209 74110289 -45634609 + (TA)n Simple_repeat Simple_repeat 2 82 0 1964 122 29 7 chr13 74112383 74112662 -45632236 - AluSx SINE Alu -27 285 1 237 337 139 0 chr13 74112909 74113010 -45631888 - MIR3 SINE MIR -36 172 58 1012 149 6 0 chr13 74113270 74113431 -45631467 - MER3 DNA MER1_type -46 163 2 1184 175 120 5 chr13 74115405 74115622 -45629276 + MER1B DNA MER1_type 131 332 -7 637 249 25 55 chr13 74115650 74115851 -45629047 + MIR SINE MIR 1 195 -67 343 297 125 0 chr13 74116443 74116571 -45628327 + MIR SINE MIR 2 145 -117 2013 136 0 10 chr13 74116861 74117163 -45627735 - AluSx SINE Alu -13 299 1 1898 129 6 38 chr13 74117701 74118019 -45626879 - AluJb SINE Alu -4 308 1 24 32 0 0 chr13 74118176 74118207 -45626691 + AT_rich Low_complexity Low_complexity 1 31 0 31 44 0 0 chr13 74119429 74119474 -45625424 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr13 74122050 74122078 -45622820 + AT_rich Low_complexity Low_complexity 1 28 0 180 333 0 0 chr13 74122241 74122280 -45622618 - L2 LINE L2 -94 3178 3140 717 211 113 31 chr13 74122477 74122658 -45622240 - MER58B DNA MER1_type -1 340 144 3131 138 72 19 chr13 74122658 74123224 -45621674 - MER7C DNA MER2_type -1 601 6 2238 125 0 3 chr13 74123302 74123615 -45621283 + AluSq SINE Alu 1 312 -1 1195 101 30 0 chr13 74123615 74123783 -45621115 + AluSg/x SINE Alu 134 306 -6 316 283 57 0 chr13 74124002 74124108 -45620790 - MIR SINE MIR -33 229 118 1798 125 49 41 chr13 74124112 74124479 -45620419 - THE1C LTR MaLR -5 370 1 24 53 0 0 chr13 74125583 74125621 -45619277 + AT_rich Low_complexity Low_complexity 1 38 0 1670 176 7 11 chr13 74126042 74126326 -45618572 + AluJb SINE Alu 28 310 -2 1053 162 12 0 chr13 74126554 74126727 -45618171 + FRAM SINE Alu 1 174 -2 761 140 7 35 chr13 74126737 74126880 -45618018 + FLAM_C SINE Alu 1 139 -4 316 281 214 17 chr13 74127895 74128073 -45616825 - MIR SINE MIR -10 252 40 4619 92 61 4 chr13 74129152 74129878 -45615020 - L1MA5 LINE L1 -2 6298 5532 301 287 159 41 chr13 74129879 74130074 -45614824 - MIR SINE MIR -37 225 8 209 250 59 140 chr13 74130178 74130314 -45614584 + MIR SINE MIR 105 229 -33 25 0 0 0 chr13 74130339 74130364 -45614534 + AT_rich Low_complexity Low_complexity 1 25 0 868 69 86 0 chr13 74130431 74130547 -45614351 - MER85 DNA T2_type -13 126 1 283 324 218 16 chr13 74130601 74130987 -45613911 + L2 LINE L2 1730 2193 -1121 259 220 0 34 chr13 74131012 74131071 -45613827 - L2 LINE L2 -13 3300 3244 316 215 122 28 chr13 74131436 74131543 -45613355 + HAL1 LINE L1 1090 1206 -1301 721 262 199 21 chr13 74131554 74131936 -45612962 + HAL1 LINE L1 1247 1696 -811 260 301 42 28 chr13 74131985 74132128 -45612770 + L3 LINE CR1 1288 1432 -145 285 29 0 0 chr13 74132269 74132303 -45612595 + (GA)n Simple_repeat Simple_repeat 2 35 0 395 302 105 12 chr13 74132499 74132671 -45612227 + MIR SINE MIR 75 262 0 1198 214 12 12 chr13 74132697 74132940 -45611958 + MIR SINE MIR 20 262 0 2209 110 3 0 chr13 74133196 74133487 -45611411 + AluSx SINE Alu 1 292 -20 31 0 0 0 chr13 74133779 74133810 -45611088 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 74135343 74135365 -45609533 + AT_rich Low_complexity Low_complexity 1 22 0 1235 62 106 6 chr13 74135603 74135782 -45609116 + MER107 DNA MER1_type 1 197 0 1992 125 0 46 chr13 74136992 74137319 -45607579 + AluJb SINE Alu 1 312 0 3947 141 21 13 chr13 74137744 74138216 -45606682 - L1MA7 LINE L1 -21 6270 5790 405 0 0 0 chr13 74138216 74138261 -45606637 + (TG)n Simple_repeat Simple_repeat 2 46 0 3947 141 21 13 chr13 74138261 74138467 -45606431 - L1MA7 LINE L1 -501 5790 5587 300 243 171 29 chr13 74138948 74139088 -45605810 + L2 LINE L2 2678 2837 -477 211 293 120 33 chr13 74139132 74139282 -45605616 + L2 LINE L2 2902 3064 -208 429 308 60 50 chr13 74139373 74140005 -45604893 + L1ME LINE L1 5106 5775 -387 553 250 23 30 chr13 74140088 74140220 -45604678 - MIR SINE MIR -102 160 30 871 284 19 0 chr13 74140220 74140435 -45604463 + MER58A DNA MER1_type 2 220 -4 653 166 179 13 chr13 74140452 74140603 -45604295 + MER3 DNA MER1_type 9 184 -25 1025 238 5 5 chr13 74140607 74140821 -45604077 - LTR40a LTR ERVL 0 519 306 1842 177 87 0 chr13 74140838 74141194 -45603704 - MER54A LTR ERVL -39 862 476 1147 250 76 3 chr13 74141321 74141609 -45603289 - LTR40a LTR ERVL -210 309 1 403 333 42 18 chr13 74141867 74142035 -45602863 - MIR3 SINE MIR -12 196 25 572 294 109 9 chr13 74142045 74142256 -45602642 + MIR SINE MIR 10 241 -21 1915 176 58 19 chr13 74143432 74143842 -45601056 - MER63B DNA MER1_type -10 426 1 520 320 182 4 chr13 74144065 74144537 -45600361 + L1MC4a LINE L1 5338 5893 -1915 2309 92 3 0 chr13 74145120 74145415 -45599483 + AluSp SINE Alu 1 296 -17 23 33 0 0 chr13 74146779 74146809 -45598089 + AT_rich Low_complexity Low_complexity 1 30 0 2477 84 45 0 chr13 74146818 74147176 -45597722 - L1PA13 LINE L1 -1 6162 5789 32 0 0 0 chr13 74147918 74147950 -45596948 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr13 74148317 74148343 -45596555 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2209 107 0 7 chr13 74148345 74148636 -45596262 - AluSx SINE Alu -23 289 1 1979 97 23 57 chr13 74149954 74150253 -45594645 - AluSx SINE Alu -23 289 1 985 114 0 0 chr13 74150936 74151067 -45593831 + AluSq/x SINE Alu 3 133 -180 1342 186 55 4 chr13 74151216 74151491 -45593407 + MER58B DNA MER1_type 50 338 -3 321 301 32 32 chr13 74151494 74151617 -45593281 + L2 LINE L2 3148 3270 -2 21 0 0 0 chr13 74153453 74153474 -45591424 + GC_rich Low_complexity Low_complexity 1 21 0 276 224 91 103 chr13 74154179 74154344 -45590554 + MIR SINE MIR 44 206 -56 2242 97 0 3 chr13 74154583 74154881 -45590017 - AluSq SINE Alu -16 297 1 210 245 0 0 chr13 74155091 74155140 -45589758 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 2080 77 50 47 chr13 74155962 74156260 -45588638 - AluSq SINE Alu -14 299 1 411 73 0 0 chr13 74156273 74156328 -45588570 + (TA)n Simple_repeat Simple_repeat 2 56 0 1156 94 0 0 chr13 74156341 74156490 -45588408 + AluSg/x SINE Alu 151 299 -13 463 348 47 99 chr13 74156881 74157306 -45587592 + L2 LINE L2 2832 3234 -38 1540 155 63 29 chr13 74157322 74157670 -45587228 - MER46B DNA MER2_type -1 235 1 203 224 90 60 chr13 74158621 74158688 -45586210 - L2 LINE L2 -20 3293 3225 671 244 111 6 chr13 74158708 74158880 -45586018 - MIR SINE MIR -71 191 2 225 259 0 47 chr13 74159076 74159161 -45585737 + L1MEd LINE L1 949 1029 -5090 2929 242 63 16 chr13 74159182 74160079 -45584819 + L1MEc LINE L1 44 983 -5413 2405 88 3 0 chr13 74160116 74160423 -45584475 - AluSp SINE Alu -5 308 1 506 170 188 6 chr13 74161190 74161355 -45583543 - MER5C DNA MER1_type -37 287 93 350 280 136 0 chr13 74161430 74161644 -45583254 + L1ME4a LINE L1 5619 5861 -260 2295 82 0 13 chr13 74162251 74162555 -45582343 + AluY SINE Alu 1 300 -11 762 230 50 105 chr13 74162626 74163026 -45581872 + MLT1B LTR MaLR 13 390 0 2914 188 57 19 chr13 74163026 74163390 -45581508 + MLT1B-int LTR MaLR 1 350 -1021 2182 128 3 3 chr13 74163390 74163696 -45581202 + AluSq SINE Alu 1 306 -7 2914 188 57 19 chr13 74163696 74164016 -45580882 + MLT1B-int LTR MaLR 350 711 -660 2088 143 48 71 chr13 74164776 74164815 -45580083 - MSTA LTR MaLR 0 428 390 1978 145 7 3 chr13 74164815 74165118 -45579780 + AluSx SINE Alu 2 305 -7 2088 143 48 71 chr13 74165118 74165512 -45579386 - MSTA LTR MaLR -38 390 5 7764 166 17 4 chr13 74165531 74166908 -45577990 - MSTA-int LTR MaLR -16 1635 240 533 218 0 0 chr13 74166907 74167031 -45577867 - MST-int LTR MaLR -943 708 585 * 193 294 22 43 chr13 74167084 74167176 -45577722 - MIR SINE MIR 0 262 173 1089 175 63 9 chr13 74167189 74167325 -45577573 + MER46A DNA MER2_type 1 155 -2576 1879 165 0 58 chr13 74167325 74167689 -45577209 - MER2 DNA MER2_type 0 344 2 1089 175 63 9 chr13 74167689 74167775 -45577123 + MER46A DNA MER2_type 155 235 -1 372 313 56 14 chr13 74167776 74167920 -45576978 - MIR SINE MIR -105 157 8 23 54 0 0 chr13 74168029 74168066 -45576832 + AT_rich Low_complexity Low_complexity 1 37 0 1452 195 50 8 chr13 74168576 74168838 -45576060 + AluJo SINE Alu 1 273 -39 24 53 0 0 chr13 74170063 74170101 -45574797 + AT_rich Low_complexity Low_complexity 1 38 0 1907 194 48 55 chr13 74172724 74172759 -45572139 - L1MB3 LINE L1 -16 6167 6133 2299 109 0 3 chr13 74172759 74173061 -45571837 - AluSx SINE Alu -11 301 1 1907 194 48 55 chr13 74173061 74173571 -45571327 - L1MB3 LINE L1 -50 6133 5626 227 277 92 25 chr13 74173626 74173745 -45571153 - L2 LINE L2 -583 2731 2605 643 244 81 50 chr13 74173994 74174215 -45570683 + L2 LINE L2 3086 3313 0 614 286 95 33 chr13 74174260 74174501 -45570397 - MIR SINE MIR -3 259 4 843 84 0 0 chr13 74174906 74175013 -45569885 + U6 snRNA snRNA 1 107 0 7855 36 8 1 chr13 74175013 74176760 -45568138 + L1PA5 LINE L1 4389 6154 0 343 281 120 27 chr13 74177691 74177832 -45567066 + MER113 DNA MER1_type? 160 287 -234 2412 88 7 0 chr13 74177832 74178137 -45566761 + AluSx SINE Alu 3 309 -3 343 281 120 27 chr13 74178137 74178287 -45566611 + MER113 DNA MER1_type? 287 478 -43 294 299 28 19 chr13 74178413 74178520 -45566378 + MIR SINE MIR 145 252 -10 802 69 10 0 chr13 74179502 74179603 -45565295 - AluSg/x SINE Alu -16 296 195 2236 118 3 0 chr13 74179604 74179908 -45564990 - AluSx SINE Alu -7 305 1 1748 160 20 10 chr13 74180622 74180915 -45563983 + AluJo SINE Alu 1 296 -16 263 236 0 36 chr13 74181594 74181649 -45563249 + L2 LINE L2 3211 3263 -9 431 285 22 66 chr13 74181749 74181886 -45563012 - MIR SINE MIR -25 237 107 1872 140 59 7 chr13 74181923 74182209 -45562689 + AluSx SINE Alu 1 301 -11 2149 233 14 17 chr13 74182285 74182801 -45562097 + LTR40a LTR ERVL 1 514 -5 22 35 0 0 chr13 74183022 74183051 -45561847 + AT_rich Low_complexity Low_complexity 1 29 0 451 292 104 50 chr13 74183182 74183384 -45561514 - L2 LINE L2 0 3272 3060 236 250 119 36 chr13 74183688 74183772 -45561126 - L2 LINE L2 -84 3188 3098 196 339 0 0 chr13 74185231 74185290 -45559608 - L2 LINE L2 0 3272 3214 207 0 0 0 chr13 74186849 74186872 -45558026 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 212 171 0 0 chr13 74186977 74187012 -45557886 - L2 LINE L2 -1 3312 3278 331 298 0 21 chr13 74187023 74187117 -45557781 + MIR SINE MIR 2 93 -169 2252 132 0 0 chr13 74187223 74187533 -45557365 + AluSx SINE Alu 1 310 -2 4289 190 18 4 chr13 74187609 74188436 -45556462 - MSTA-int LTR MaLR -579 1072 234 1794 134 27 0 chr13 74188436 74188734 -45556164 - MSTA LTR MaLR -122 306 1 1893 145 71 14 chr13 74188772 74189123 -45555775 + THE1C LTR MaLR 3 373 -2 2206 151 68 17 chr13 74189134 74189545 -45555353 + MSTB1 LTR MaLR 1 432 0 431 194 73 33 chr13 74189649 74189780 -45555118 - MSTB2 LTR MaLR -50 407 220 372 261 101 10 chr13 74189785 74189984 -45554914 - Charlie7 DNA MER1_type -362 2250 2034 1403 235 38 3 chr13 74189984 74190302 -45554596 - MLT1D LTR MaLR -102 403 75 1719 204 90 20 chr13 74190302 74190704 -45554194 + MLT2B1 LTR ERVL 1 430 -90 485 242 42 0 chr13 74190702 74190822 -45554076 + MLT2D LTR ERVL 230 354 -60 * 198 44 44 44 chr13 74190822 74190867 -45554031 + (TCTCTG)n Simple_repeat Simple_repeat 3 47 0 324 0 0 0 chr13 74190888 74190924 -45553974 + (CA)n Simple_repeat Simple_repeat 2 37 0 1637 187 24 35 chr13 74192189 74192558 -45552340 - MLT1A1 LTR MaLR 0 365 1 326 304 88 23 chr13 74193005 74193176 -45551722 + MIR SINE MIR 81 262 0 753 179 13 7 chr13 74194416 74194567 -45550331 - MLT1A1 LTR MaLR 0 365 214 472 295 123 72 chr13 74194752 74194902 -45549996 - L2 LINE L2 0 3272 3131 2498 143 24 16 chr13 74194902 74195328 -45549570 + MSTB1 LTR MaLR 1 429 -3 472 295 123 72 chr13 74195328 74195509 -45549389 - L2 LINE L2 -141 3131 2924 1306 150 115 24 chr13 74195719 74196006 -45548892 - THE1C LTR MaLR -62 313 1 880 262 60 28 chr13 74196101 74196353 -45548545 - MIR SINE MIR -1 261 2 3024 146 74 31 chr13 74196797 74197231 -45547667 + L1MC1 LINE L1 5546 6019 -314 2147 130 0 3 chr13 74197231 74197539 -45547359 + AluSx SINE Alu 1 307 -5 3024 146 74 31 chr13 74197539 74197753 -45547145 + L1MC1 LINE L1 6019 6222 -111 1199 135 65 0 chr13 74197753 74197938 -45546960 - AluSx SINE Alu -115 197 1 778 186 30 118 chr13 74198022 74198259 -45546639 + MLT1F1 LTR MaLR 375 564 -3 237 195 52 26 chr13 74198527 74198604 -45546294 - L1M1 LINE L1 -536 5767 5689 28 0 0 0 chr13 74199006 74199034 -45545864 + AT_rich Low_complexity Low_complexity 1 28 0 1014 223 107 27 chr13 74199693 74199750 -45545148 - L1MD2 LINE L1 -14 6345 6294 1939 174 13 35 chr13 74199750 74199907 -45544991 + MLT1A1 LTR MaLR 1 160 -205 2374 84 0 0 chr13 74199907 74200203 -45544695 + AluSg SINE Alu 1 296 -14 1939 174 13 35 chr13 74200203 74200418 -45544480 + MLT1A1 LTR MaLR 160 365 0 1014 223 107 27 chr13 74200418 74200688 -45544210 - L1MD2 LINE L1 -65 6294 5992 888 237 9 73 chr13 74200879 74201195 -45543703 - MER46C DNA MER2_type -39 299 4 1909 126 4 0 chr13 74201212 74201474 -45543424 - AluSp SINE Alu -45 268 6 1490 158 9 104 chr13 74201485 74201908 -45542990 - L1MB4 LINE L1 -1 6179 5797 2030 103 7 11 chr13 74201924 74202205 -45542693 + AluSx SINE Alu 1 280 -32 209 32 0 32 chr13 74202205 74202236 -45542662 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 25 23 0 23 chr13 74204064 74204086 -45540812 + AT_rich Low_complexity Low_complexity 1 23 -19 7472 26 2 0 chr13 74204086 74205474 -45539424 - L1PA4 LINE L1 -3 6152 4758 25 23 0 23 chr13 74205474 74205494 -45539404 + AT_rich Low_complexity Low_complexity 23 42 0 497 235 255 5 chr13 74205602 74205798 -45539100 - MIR SINE MIR -10 252 8 1939 246 88 40 chr13 74206127 74206268 -45538630 - L2 LINE L2 -33 3280 3147 1453 151 21 112 chr13 74206268 74206599 -45538299 + AluYb8 SINE Alu 1 301 -17 1939 246 88 40 chr13 74206599 74207357 -45537541 - L2 LINE L2 -166 3147 2334 284 260 0 14 chr13 74207584 74207657 -45537241 + L2 LINE L2 3241 3312 -1 1695 194 47 53 chr13 74207929 74208397 -45536501 + MLT1C LTR MaLR 1 465 -2 725 308 33 14 chr13 74208469 74208683 -45536215 + MIR SINE MIR 2 219 -43 2242 72 34 0 chr13 74208954 74209081 -45535817 + AluY SINE Alu 1 122 -189 180 0 0 0 chr13 74209081 74209101 -45535797 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2242 72 34 0 chr13 74209101 74209266 -45535632 + AluY SINE Alu 122 303 -8 1956 223 40 71 chr13 74209268 74210525 -45534373 - L1MB8 LINE L1 -11 6167 4970 2165 117 0 0 chr13 74212377 74212684 -45532214 - AluY SINE Alu 0 311 5 2164 80 77 0 chr13 74212763 74213049 -45531849 + AluSp SINE Alu 1 308 -5 190 394 126 0 chr13 74213127 74213254 -45531644 + L2 LINE L2 3126 3268 -4 240 264 33 22 chr13 74213479 74213570 -45531328 - MER94 DNA DNA -1 133 42 493 163 0 0 chr13 74213628 74213708 -45531190 - AluJ/FLAM SINE Alu -228 84 5 299 333 217 28 chr13 74213889 74214487 -45530411 + L2 LINE L2 2230 2940 -374 708 274 11 0 chr13 74215101 74215280 -45529618 + MIR SINE MIR 66 246 -16 216 97 0 0 chr13 74215676 74215707 -45529191 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 910 236 35 50 chr13 74216054 74216313 -45528585 + MIR SINE MIR 8 262 0 1061 179 63 0 chr13 74216779 74216969 -45527929 - AluJo SINE Alu -24 288 87 315 266 105 24 chr13 74217091 74217279 -45527619 - MLT1I LTR MaLR -1 474 267 25 51 0 0 chr13 74219753 74219792 -45525106 + AT_rich Low_complexity Low_complexity 1 39 0 315 301 0 14 chr13 74220275 74220421 -45524477 + (TA)n Simple_repeat Simple_repeat 1 144 0 187 346 19 39 chr13 74220520 74220624 -45524274 - L3 LINE CR1 -24 1553 1452 260 305 37 0 chr13 74221506 74221588 -45523310 - L3b LINE CR1 -98 1485 1401 875 139 0 0 chr13 74221596 74221725 -45523173 - AluSg/x SINE Alu -8 302 174 249 347 59 55 chr13 74221832 74222051 -45522847 + L2 LINE L2 2618 2837 -477 243 266 0 16 chr13 74222096 74222160 -45522738 - MIR SINE MIR 0 262 200 218 288 150 12 chr13 74222248 74222328 -45522570 - L2 LINE L2 -16 3297 3207 683 80 0 0 chr13 74222328 74222416 -45522482 + AluS SINE Alu 15 102 -211 2148 126 51 31 chr13 74222611 74222967 -45521931 + THE1B LTR MaLR 2 364 0 1640 214 0 0 chr13 74223152 74223441 -45521457 + AluJo SINE Alu 1 289 -23 192 77 0 0 chr13 74223473 74223499 -45521399 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 2048 170 16 64 chr13 74224312 74224747 -45520151 + MLT2D LTR ERVL 1 414 0 2422 77 7 0 chr13 74224791 74225091 -45519807 + AluSp SINE Alu 1 302 -11 799 250 48 36 chr13 74225267 74225515 -45519383 + MIR SINE MIR 1 251 -11 245 246 74 86 chr13 74225658 74225763 -45519135 - L1ME4a LINE L1 0 6121 6017 781 188 156 5 chr13 74225763 74225955 -45518943 - MER58A DNA MER1_type 0 224 4 245 246 74 86 chr13 74225955 74226024 -45518874 - L1ME4a LINE L1 -104 6017 5949 594 259 145 48 chr13 74226580 74226869 -45518029 + L2 LINE L2 2997 3313 0 251 361 9 0 chr13 74226899 74227007 -45517891 - L1ME LINE L1 -530 5591 5483 234 0 0 0 chr13 74227394 74227420 -45517478 + (T)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr13 74227798 74227830 -45517068 + AT_rich Low_complexity Low_complexity 1 32 0 324 250 0 65 chr13 74231259 74231351 -45513547 - MIR SINE MIR -67 195 110 242 204 61 0 chr13 74231485 74231534 -45513364 + L2 LINE L2 3262 3313 0 263 281 15 74 chr13 74231738 74231873 -45513025 + MIR SINE MIR 120 246 -16 618 317 88 0 chr13 74232378 74232605 -45512293 - MIR SINE MIR -15 247 1 259 137 247 0 chr13 74232655 74232728 -45512170 + L1ME3A LINE L1 6077 6167 -3 319 255 76 6 chr13 74232754 74232911 -45511987 + L1ME4a LINE L1 5949 6116 -5 271 273 161 63 chr13 74232952 74233157 -45511741 - MIR SINE MIR -6 256 32 303 312 11 11 chr13 74234275 74234368 -45510530 + L3 LINE CR1 193 285 -1292 279 301 73 8 chr13 74234472 74234595 -45510303 + L2 LINE L2 3024 3154 -159 1899 99 0 15 chr13 74234611 74234873 -45510025 - AluSx SINE Alu -12 300 43 374 274 44 30 chr13 74234907 74235042 -45509856 + L3 LINE CR1 646 782 -795 946 191 16 26 chr13 74235791 74235980 -45508918 - MER5A DNA MER1_type -1 188 2 211 271 47 12 chr13 74235982 74236067 -45508831 + MER91A DNA MER1_type 21 108 -88 573 277 24 36 chr13 74236275 74236441 -45508457 + MIR3 SINE MIR 39 202 -6 707 151 36 14 chr13 74236957 74237096 -45507802 + AluJo SINE Alu 1 142 -170 636 72 72 0 chr13 74287107 74287332 -45457566 + (TA)n Simple_repeat Simple_repeat 1 241 0 392 192 10 50 chr13 74287332 74287431 -45457467 - L1MD3 LINE L1 -17 7978 7884 1242 140 5 0 chr13 74287431 74287617 -45457281 - AluJb SINE Alu -13 299 113 462 311 130 27 chr13 74288405 74288704 -45456194 - L2 LINE L2 -640 2674 2345 531 143 111 32 chr13 74288911 74289037 -45455861 - L1MD3 LINE L1 -115 7880 7745 27 0 0 0 chr13 74289103 74289130 -45455768 + AT_rich Low_complexity Low_complexity 1 27 0 1200 102 88 0 chr13 74289423 74289628 -45455270 + L1MA9 LINE L1 6030 6252 -60 928 171 11 11 chr13 74289637 74289813 -45455085 + AluJo SINE Alu 123 298 -14 232 83 0 0 chr13 74289813 74289849 -45455049 + L1MA9 LINE L1 6269 6304 -8 395 19 19 0 chr13 74289981 74290033 -45454865 + (TG)n Simple_repeat Simple_repeat 2 54 0 2191 128 0 0 chr13 74290033 74290338 -45454560 - AluSx SINE Alu -7 305 1 597 199 76 15 chr13 74290356 74290487 -45454411 - AluJo SINE Alu -137 175 37 229 182 0 0 chr13 74291391 74291435 -45453463 + (CCCCG)n Simple_repeat Simple_repeat 3 46 0 252 335 67 11 chr13 74291539 74291649 -45453249 - MIR SINE MIR -87 121 3 1194 163 223 7 chr13 74292260 74292543 -45452355 + L1MB5 LINE L1 5797 6140 -34 810 161 8 15 chr13 74292545 74292675 -45452223 + FLAM_C SINE Alu 1 129 -14 237 100 0 0 chr13 74292688 74292728 -45452170 + L1MB5 LINE L1 6127 6166 -8 5137 112 9 4 chr13 74292997 74293143 -45451755 + L1PA13 LINE L1 5350 5494 -669 1917 167 3 0 chr13 74293143 74293449 -45451449 + AluSx SINE Alu 1 307 -5 5137 112 9 4 chr13 74293449 74294112 -45450786 + L1PA13 LINE L1 5494 6163 0 2136 106 10 30 chr13 74295646 74295948 -45448950 - AluSp SINE Alu -16 297 2 207 0 0 0 chr13 74296150 74296173 -45448725 + (A)n Simple_repeat Simple_repeat 1 23 0 225 178 0 0 chr13 74296874 74296919 -45447979 + (TG)n Simple_repeat Simple_repeat 2 46 0 1889 172 3 3 chr13 74297540 74297837 -45447061 - AluJo SINE Alu -14 298 2 2181 99 14 0 chr13 74297838 74298131 -45446767 - AluSg SINE Alu -13 297 1 349 145 0 0 chr13 74298520 74298582 -45446316 + L1MB8 LINE L1 6106 6167 -11 704 307 111 35 chr13 74298590 74298733 -45446165 + HAL1 LINE L1 1307 1438 -1069 2098 128 3 0 chr13 74298733 74299030 -45445868 + AluSx SINE Alu 1 298 -14 704 307 111 35 chr13 74299030 74299452 -45445446 + HAL1 LINE L1 1438 1915 -592 1616 188 16 10 chr13 74299588 74299897 -45445001 + AluJb SINE Alu 1 311 -1 2156 101 10 7 chr13 74300017 74300314 -45444584 + AluSq SINE Alu 1 298 -15 243 336 84 28 chr13 74300373 74300480 -45444418 - L2 LINE L2 -202 3070 2958 22 0 0 0 chr13 74301163 74301185 -45443713 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr13 74301292 74301329 -45443569 + AT_rich Low_complexity Low_complexity 1 37 0 254 263 84 63 chr13 74301457 74301552 -45443346 - L2 LINE L2 -10 3303 3207 1342 206 34 58 chr13 74302092 74302470 -45442428 + MER93b LTR ERV1 5 373 0 226 143 32 16 chr13 74302490 74302541 -45442357 + A-rich Low_complexity Low_complexity 5 59 -9 1849 156 0 52 chr13 74302541 74302869 -45442029 + AluJo SINE Alu 1 311 -1 226 143 32 16 chr13 74302869 74302880 -45442018 + A-rich Low_complexity Low_complexity 59 68 0 684 274 52 91 chr13 74302910 74303264 -45441634 + L2 LINE L2 2301 2636 -678 4014 144 23 66 chr13 74303264 74304137 -45440761 + L1MA4A LINE L1 5468 6302 -1 684 274 52 91 chr13 74304137 74304223 -45440675 + L2 LINE L2 2636 2724 -590 1083 91 7 0 chr13 74304394 74304537 -45440361 - U4 snRNA snRNA -1 144 1 239 28 0 0 chr13 74304966 74305002 -45439896 - Alu SINE Alu -6 294 259 334 306 78 76 chr13 74305222 74305617 -45439281 + MLT1K LTR MaLR 186 581 -7 364 21 0 0 chr13 74306791 74306838 -45438060 + L1PA2 LINE L1 6107 6153 -2 747 182 76 40 chr13 74306838 74307113 -45437785 + L1MC5 LINE L1 7643 7927 -34 458 329 13 0 chr13 74307607 74307756 -45437142 + MER117 DNA MER1_type 11 161 -36 2272 169 12 26 chr13 74307875 74307936 -45436962 - MLT2D LTR ERVL 0 414 354 342 0 0 0 chr13 74307936 74307974 -45436924 + (GA)n Simple_repeat Simple_repeat 1 38 0 2272 169 12 26 chr13 74307974 74308332 -45436566 - MLT2D LTR ERVL -60 354 1 2333 97 0 3 chr13 74308351 74308650 -45436248 + AluSq SINE Alu 1 298 -15 346 307 46 52 chr13 74308964 74309117 -45435781 + MIR SINE MIR 92 243 -19 1939 129 11 3 chr13 74309194 74309480 -45435418 + AluSx SINE Alu 6 293 -19 225 67 0 0 chr13 74309484 74309529 -45435369 - LTR66 LTR ERVL -172 438 394 228 200 0 0 chr13 74309538 74309593 -45435305 + (TA)n Simple_repeat Simple_repeat 2 56 0 2027 129 3 29 chr13 74309788 74310098 -45434800 - AluSx SINE Alu -10 302 1 194 328 64 40 chr13 74310180 74310277 -45434621 - L2 LINE L2 -188 3084 2982 1219 229 96 13 chr13 74310277 74310591 -45434307 + MER58B DNA MER1_type 2 341 0 194 328 64 40 chr13 74310591 74310618 -45434280 - L2 LINE L2 -290 2982 2957 1702 171 0 33 chr13 74311036 74311335 -45433563 + AluJo SINE Alu 1 289 -23 228 217 0 17 chr13 74311339 74311399 -45433499 + L1MCa LINE L1 2006 2064 -4362 * 249 247 11 0 chr13 74311366 74311462 -45433436 + L1MC4 LINE L1 6879 6926 -1139 226 258 19 39 chr13 74311372 74311528 -45433370 - L1MC3 LINE L1 -1139 6703 6543 * 555 258 0 0 chr13 74311541 74311696 -45433202 + (TG)n Simple_repeat Simple_repeat 2 156 0 5965 80 57 45 chr13 74311907 74312170 -45432728 + Tigger3b DNA MER2_type 277 535 -2493 2149 125 0 10 chr13 74312170 74312466 -45432432 - AluSx SINE Alu -19 293 1 5965 80 57 45 chr13 74312466 74312713 -45432185 + Tigger3b DNA MER2_type 535 777 -2251 2392 82 0 13 chr13 74312713 74313019 -45431879 + AluSg SINE Alu 1 302 -8 5965 80 57 45 chr13 74313019 74313215 -45431683 + Tigger3b DNA MER2_type 777 969 -2059 852 170 0 30 chr13 74313215 74313350 -45431548 - FLAM_C SINE Alu -2 131 1 5965 80 57 45 chr13 74313350 74313495 -45431403 + Tigger3b DNA MER2_type 969 1146 -1882 2309 147 6 15 chr13 74313495 74313835 -45431063 - MER1B DNA MER1_type 0 337 1 5965 80 57 45 chr13 74313835 74313923 -45430975 + Tigger3b DNA MER2_type 1146 1231 0 699 317 92 0 chr13 74313923 74314207 -45430691 - LTR16A LTR ERVL -140 310 1 279 0 0 0 chr13 74314380 74314411 -45430487 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1977 121 4 7 chr13 74314413 74314693 -45430205 - AluSx SINE Alu -33 279 1 224 361 101 5 chr13 74315210 74315274 -45429624 - L2 LINE L2 -417 2897 2841 2216 115 0 3 chr13 74315274 74315578 -45429320 - AluSx SINE Alu -8 304 2 224 361 101 5 chr13 74315578 74315721 -45429177 - L2 LINE L2 -473 2841 2670 189 107 0 0 chr13 74315832 74315860 -45429038 + (A)n Simple_repeat Simple_repeat 1 28 0 210 118 0 0 chr13 74316044 74316078 -45428820 + (TG)n Simple_repeat Simple_repeat 2 35 0 270 240 120 0 chr13 74316529 74316604 -45428294 + MLT1K LTR MaLR 157 240 -348 1988 128 7 3 chr13 74316685 74316967 -45427931 + AluSx SINE Alu 1 283 -29 197 81 0 27 chr13 74316971 74317008 -45427890 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 204 143 0 61 chr13 74317097 74317146 -45427752 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 282 143 0 0 chr13 74317245 74317294 -45427604 + (CA)n Simple_repeat Simple_repeat 2 50 0 594 266 14 98 chr13 74317409 74317516 -45427382 - MIR SINE MIR -2 260 146 1831 156 7 20 chr13 74317516 74317817 -45427081 - AluJb SINE Alu -15 297 1 594 266 14 98 chr13 74317817 74317984 -45426914 - MIR SINE MIR -116 146 9 2204 124 0 0 chr13 74318317 74318616 -45426282 - AluSx SINE Alu -13 299 1 350 188 0 0 chr13 74318705 74318769 -45426129 + MLT1G1 LTR MaLR 20 83 -459 1397 128 0 18 chr13 74318874 74319093 -45425805 - AluJo SINE Alu -13 299 85 375 304 43 12 chr13 74319102 74319263 -45425635 + MLT1G1 LTR MaLR 246 411 -184 265 289 36 0 chr13 74319313 74319396 -45425502 + MLT1G1 LTR MaLR 460 545 -4 299 337 55 11 chr13 74319580 74319761 -45425137 + L2 LINE L2 2338 2526 -788 2320 78 0 0 chr13 74320214 74320526 -45424372 + AluSg SINE Alu 1 312 0 324 264 23 181 chr13 74320691 74320907 -45423991 - MER91A DNA MER1_type 0 196 15 329 340 90 6 chr13 74320995 74321151 -45423747 + MIR3 SINE MIR 15 183 -25 259 315 75 20 chr13 74321269 74321415 -45423483 + MIR SINE MIR 90 243 -19 2392 96 0 0 chr13 74321610 74321913 -45422985 + AluSx SINE Alu 1 303 -9 437 284 75 0 chr13 74322849 74322983 -45421915 - L2 LINE L2 -2 3311 3168 1128 193 0 50 chr13 74322983 74323222 -45421676 + AluJo SINE Alu 81 307 -5 1073 257 43 31 chr13 74323272 74323737 -45421161 - L2 LINE L2 -263 3050 2578 879 209 0 0 chr13 74323809 74323962 -45420936 + FRAM SINE Alu 1 152 -24 2134 112 27 3 chr13 74323965 74324260 -45420638 + AluSx SINE Alu 1 302 -10 1795 173 3 16 chr13 74324596 74324903 -45419995 + AluJb SINE Alu 1 303 -9 207 184 0 0 chr13 74326687 74326725 -45418173 + T-rich Low_complexity Low_complexity 3 40 0 2361 104 0 0 chr13 74327113 74327420 -45417478 - AluSx SINE Alu -5 307 1 225 0 0 0 chr13 74328091 74328116 -45416782 + (T)n Simple_repeat Simple_repeat 1 25 0 240 287 131 30 chr13 74328558 74328745 -45416153 - MIR SINE MIR -8 254 34 1692 118 133 11 chr13 74329240 74329511 -45415387 - AluSg1 SINE Alu -5 304 1 1035 113 13 134 chr13 74329750 74329989 -45414909 - MER20 DNA MER1_type -8 211 2 357 258 97 40 chr13 74330117 74330241 -45414657 + L2 LINE L2 3139 3269 -3 1462 262 216 13 chr13 74331127 74331997 -45412901 + L2 LINE L2 2262 3313 0 345 211 14 0 chr13 74332108 74332179 -45412719 + MER69 DNA AcHobo 2455 2526 0 261 0 0 0 chr13 74332365 74332394 -45412504 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2136 118 0 3 chr13 74332440 74332737 -45412161 - AluY SINE Alu -15 296 1 1966 137 3 11 chr13 74332791 74333103 -45411795 + AluSx SINE Alu 1 310 0 1042 183 18 0 chr13 74333208 74333377 -45411521 + FAM SINE Alu 1 172 -3 647 170 0 0 chr13 74333788 74333882 -45411016 - AluJ/FLAM SINE Alu -213 99 6 2312 96 3 0 chr13 74334322 74334623 -45410275 - AluSc SINE Alu -7 302 1 309 155 0 0 chr13 74334847 74334905 -45409993 + (TG)n Simple_repeat Simple_repeat 2 59 0 444 208 10 10 chr13 74335067 74335163 -45409735 + MLT1C LTR MaLR 35 130 -337 897 151 0 27 chr13 74335163 74335309 -45409589 + FLAM_C SINE Alu 1 142 -1 1580 107 0 0 chr13 74335425 74335631 -45409267 - AluSx SINE Alu -106 206 1 1092 189 0 5 chr13 74335631 74335827 -45409071 - L1M2a LINE L1 -6973 195 1 2375 94 0 0 chr13 74335868 74336175 -45408723 - AluSq SINE Alu -6 307 1 2018 151 3 3 chr13 74336261 74336572 -45408326 + AluSx SINE Alu 1 311 -1 1646 159 22 4 chr13 74336623 74336921 -45407977 - AluJb SINE Alu 0 303 1 418 324 67 27 chr13 74337433 74337658 -45407240 + L2 LINE L2 2988 3221 -92 700 255 8 114 chr13 74337662 74337723 -45407175 - L1MD2 LINE L1 -1 6358 6292 2132 108 0 35 chr13 74337723 74338038 -45406860 + AluSq SINE Alu 1 304 -9 700 255 8 114 chr13 74338038 74338353 -45406545 - L1MD2 LINE L1 -67 6292 6022 392 253 0 0 chr13 74338355 74338438 -45406460 + L2 LINE L2 3224 3306 -7 279 215 0 0 chr13 74338709 74338774 -45406124 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 2155 135 3 3 chr13 74339596 74339907 -45404991 - AluSx SINE Alu -1 311 1 1219 191 113 21 chr13 74340118 74340265 -45404633 - AluJo SINE Alu -2 310 178 2177 131 0 0 chr13 74340265 74340562 -45404336 - AluSq SINE Alu -16 297 1 1219 191 113 21 chr13 74340562 74340697 -45404201 - AluJo SINE Alu -134 178 2 2403 100 3 0 chr13 74342755 74343066 -45401832 - AluSp SINE Alu -1 312 1 2241 123 0 0 chr13 74343277 74343609 -45401289 + AluSx SINE Alu 1 312 0 2315 109 0 0 chr13 74343765 74344068 -45400830 - AluSx SINE Alu -9 303 1 225 333 0 0 chr13 74344122 74344185 -45400713 - L3 LINE CR1 -2 1575 1513 476 300 71 59 chr13 74344641 74344978 -45399920 - L3 LINE CR1 -154 1423 1083 23 0 0 0 chr13 74345060 74345083 -45399815 + AT_rich Low_complexity Low_complexity 1 23 0 429 353 185 19 chr13 74345269 74345886 -45399012 + L2 LINE L2 1912 2630 -684 362 343 17 69 chr13 74346179 74346354 -45398544 + L2 LINE L2 3107 3272 0 201 119 0 48 chr13 74346491 74346533 -45398365 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 210 238 0 0 chr13 74346611 74346653 -45398245 - L2 LINE L2 -17 3255 3214 312 233 0 0 chr13 74346664 74346724 -45398174 - MER94 DNA DNA -4 130 71 2549 50 7 0 chr13 74347365 74347666 -45397232 + AluY SINE Alu 1 303 -8 2204 108 3 3 chr13 74347680 74347986 -45396912 + AluSx SINE Alu 6 311 -1 468 209 16 70 chr13 74348097 74348226 -45396672 + FLAM_C SINE Alu 21 142 -1 2282 135 14 43 chr13 74348349 74348770 -45396128 - L1M2a LINE L1 -4935 2233 1825 2238 102 0 10 chr13 74348805 74349109 -45395789 - AluSx SINE Alu -11 301 1 2197 110 6 25 chr13 74349547 74349865 -45395033 + AluSx SINE Alu 1 312 0 7318 182 16 4 chr13 74349950 74352088 -45392810 - L1PA15 LINE L1 -2 6163 4019 417 150 100 63 chr13 74352169 74352388 -45392510 + AluJo SINE Alu 2 312 0 2215 139 0 0 chr13 74352428 74352738 -45392160 - AluSx SINE Alu -2 310 1 1006 141 0 0 chr13 74353015 74353157 -45391741 + AluSq/x SINE Alu 1 142 -171 2085 140 0 9 chr13 74353157 74353472 -45391426 + AluSx SINE Alu 1 312 0 350 244 166 1 chr13 74353607 74353743 -45391155 + MIR3 SINE MIR 11 167 -41 252 0 0 0 chr13 74355165 74355193 -45389705 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2194 95 0 3 chr13 74355196 74355481 -45389417 - AluSc SINE Alu -25 284 1 1785 171 7 0 chr13 74356023 74356325 -45388573 + AluJb SINE Alu 5 308 0 2278 101 0 10 chr13 74357168 74357474 -45387424 + AluSc SINE Alu 1 303 -6 283 170 131 92 chr13 74357493 74357646 -45387252 + L1ME LINE L1 5640 5801 -320 422 301 149 28 chr13 74357882 74358248 -45386650 - L2 LINE L2 -256 3057 2637 2365 104 0 0 chr13 74358301 74358600 -45386298 + AluSg SINE Alu 1 299 -11 241 245 31 82 chr13 74358784 74358882 -45386016 + MIR SINE MIR 100 192 -70 1907 157 33 0 chr13 74359382 74359681 -45385217 - AluJo SINE Alu -3 309 1 210 71 0 0 chr13 74359978 74360006 -45384892 + (T)n Simple_repeat Simple_repeat 1 28 0 344 272 0 25 chr13 74361087 74361168 -45383730 - MER5A DNA MER1_type -45 144 66 2188 127 0 0 chr13 74361168 74361468 -45383430 - AluSx SINE Alu -12 300 1 190 296 102 0 chr13 74362022 74362110 -45382788 + L2 LINE L2 3210 3306 -7 2153 103 41 0 chr13 74362374 74362665 -45382233 + AluSx SINE Alu 1 303 -9 355 355 120 34 chr13 74362674 74362998 -45381900 - MLT1K LTR MaLR -109 479 128 342 232 6 116 chr13 74363264 74363428 -45381470 - L2 LINE L2 -61 3252 3107 326 231 21 205 chr13 74363435 74363620 -45381278 + L2 LINE L2 3000 3080 -233 1743 148 10 41 chr13 74363620 74363930 -45380968 - AluJo SINE Alu 0 301 1 326 231 21 205 chr13 74363930 74364128 -45380770 + L2 LINE L2 3080 3313 0 2149 91 7 3 chr13 74364435 74364720 -45380178 + AluSp SINE Alu 14 299 -14 405 247 48 70 chr13 74364764 74364991 -45379907 - L2 LINE L2 -390 2924 2703 430 292 120 53 chr13 74365020 74365612 -45379286 + L2 LINE L2 2571 3199 -73 1213 180 58 37 chr13 74365713 74366008 -45378890 + AluJb SINE Alu 1 301 -11 2323 113 0 10 chr13 74366077 74366386 -45378512 - AluSx SINE Alu -6 306 1 21 0 0 0 chr13 74367558 74367579 -45377319 + AT_rich Low_complexity Low_complexity 1 21 0 2123 119 27 0 chr13 74367943 74368237 -45376661 - AluSx SINE Alu -10 302 1 233 348 114 13 chr13 74368945 74369103 -45375795 + MER5A DNA MER1_type 16 189 0 2096 122 14 3 chr13 74369254 74369550 -45375348 - AluJb SINE Alu -2 310 12 768 161 55 111 chr13 74369647 74369795 -45375103 - MER5A DNA MER1_type 0 189 53 2211 157 12 40 chr13 74369795 74370196 -45374702 - MLT1B LTR MaLR 0 390 1 768 161 55 111 chr13 74370196 74370246 -45374652 - MER5A DNA MER1_type -136 53 2 834 89 0 9 chr13 74370842 74370954 -45373944 + HY1 scRNA scRNA 1 111 -1 1968 159 41 46 chr13 74371335 74371759 -45373139 - THE1B LTR MaLR 0 428 1 447 182 0 0 chr13 74372787 74372853 -45372045 - FAM SINE Alu -26 159 94 1137 291 43 28 chr13 74372941 74373408 -45371490 - MLT1J LTR MaLR 0 511 38 1843 148 40 0 chr13 74373479 74373776 -45371122 + AluSx SINE Alu 1 309 -3 257 306 0 0 chr13 74373873 74373935 -45370963 - L2 LINE L2 -217 3055 2994 332 280 224 0 chr13 74374021 74374164 -45370734 + MER96 DNA MER1_type? 1 175 0 1210 232 60 46 chr13 74375046 74375331 -45369567 - AluJo SINE Alu -10 292 4 643 326 155 30 chr13 74375349 74375505 -45369393 - L3 LINE CR1 -89 1488 1353 1710 173 33 7 chr13 74375505 74375806 -45369092 - AluJo SINE Alu -3 309 1 643 326 155 30 chr13 74375806 74376087 -45368811 - L3 LINE CR1 -224 1353 996 371 601 0 6 chr13 74376123 74376301 -45368597 + polypyrimidine Low_complexity Low_complexity 4 180 0 1650 162 16 40 chr13 74376326 74376629 -45368269 - AluJo SINE Alu -11 301 6 27 29 0 0 chr13 74376693 74376727 -45368171 + AT_rich Low_complexity Low_complexity 1 34 0 433 358 16 24 chr13 74376795 74377049 -45367849 - L3 LINE CR1 -657 920 669 1991 134 0 13 chr13 74377049 74377348 -45367550 - AluSx SINE Alu -17 295 1 2127 142 0 3 chr13 74377360 74377670 -45367228 - AluSq SINE Alu -4 309 1 198 390 44 15 chr13 74377768 74377904 -45366994 + L2 LINE L2 2914 3053 -219 950 176 53 88 chr13 74378115 74378342 -45366556 + MER20 DNA MER1_type 1 219 0 626 215 0 23 chr13 74380107 74380237 -45364661 - FLAM_C SINE Alu -16 127 1 2220 122 0 0 chr13 74380263 74380559 -45364339 - AluSx SINE Alu -16 296 1 308 271 113 15 chr13 74380559 74380692 -45364206 - MIR SINE MIR -114 148 3 196 276 197 0 chr13 74381301 74381377 -45363521 - MIR SINE MIR -120 142 52 242 236 0 0 chr13 74381571 74381626 -45363272 + T-rich Low_complexity Low_complexity 1 55 0 651 294 52 62 chr13 74381932 74382037 -45362861 - L1M4 LINE L1 -3195 2951 2846 2075 110 20 3 chr13 74382037 74382336 -45362562 - AluSx SINE Alu -8 304 1 651 294 52 62 chr13 74382336 74382580 -45362318 - L1M4 LINE L1 -3300 2846 2601 1601 167 89 3 chr13 74382580 74382862 -45362036 - AluJb SINE Alu -6 306 1 651 294 52 62 chr13 74382862 74383331 -45361567 - L1M4 LINE L1 -3545 2601 2140 229 64 64 0 chr13 74384031 74384078 -45360820 + T-rich Low_complexity Low_complexity 1 50 0 2087 137 0 0 chr13 74384561 74384861 -45360037 + AluSx SINE Alu 1 300 -12 2136 116 0 49 chr13 74385798 74386126 -45358772 + AluSx SINE Alu 1 312 0 1488 259 117 80 chr13 74386153 74386645 -45358253 + MLT1G LTR MaLR 14 510 -80 455 273 182 10 chr13 74386743 74386941 -45357957 + MIR SINE MIR 12 243 -19 289 277 89 27 chr13 74387145 74387257 -45357641 + L2 LINE L2 3191 3309 -4 2284 99 3 10 chr13 74387279 74387581 -45357317 + AluSx SINE Alu 1 300 -12 2320 71 3 7 chr13 74387726 74388023 -45356875 - AluY SINE Alu -15 296 1 21 36 0 0 chr13 74388588 74388616 -45356282 + AT_rich Low_complexity Low_complexity 1 28 0 457 290 53 18 chr13 74388731 74388900 -45355998 - MLT1I LTR MaLR -191 218 44 811 122 0 0 chr13 74388901 74389016 -45355882 + AluSc SINE Alu 175 289 -20 2293 101 0 3 chr13 74390775 74391071 -45353827 + AluSx SINE Alu 1 295 -17 383 343 186 19 chr13 74391150 74391713 -45353185 - L2 LINE L2 -337 2977 2321 273 326 43 0 chr13 74391720 74391812 -45353086 - MIR SINE MIR 0 262 167 309 183 68 0 chr13 74391828 74391916 -45352982 - HsTC2 DNA Tc2 -1 1897 3 491 190 100 0 chr13 74391918 74392018 -45352880 - MIR SINE MIR -111 151 42 191 308 90 13 chr13 74392035 74392113 -45352785 - MIR SINE MIR -174 88 5 260 177 97 16 chr13 74392119 74392181 -45352717 - L2 LINE L2 -1023 2291 2225 348 230 127 16 chr13 74393959 74394085 -45350813 - MLT1J LTR MaLR -49 462 323 207 114 0 0 chr13 74395053 74395088 -45349810 + (A)n Simple_repeat Simple_repeat 1 35 0 1991 145 3 0 chr13 74397448 74397738 -45347160 + AluSq SINE Alu 1 291 -22 301 276 31 20 chr13 74398180 74398278 -45346620 - MIR3 SINE MIR -9 199 101 2117 133 0 0 chr13 74399858 74400159 -45344739 + AluSx SINE Alu 1 301 -11 1504 172 48 4 chr13 74400359 74400627 -45344271 - AluSx SINE Alu -32 280 1 1962 115 24 10 chr13 74401350 74401646 -45343252 - AluSx SINE Alu 0 312 13 614 111 0 30 chr13 74401646 74401745 -45343153 + AluY SINE Alu 215 310 -1 223 363 50 0 chr13 74402387 74402467 -45342431 + MIR SINE MIR 37 120 -88 216 174 22 0 chr13 74403028 74403074 -45341824 + L3b LINE CR1 1273 1319 -264 * 220 317 71 98 chr13 74403050 74403274 -45341624 + L2 LINE L2 3046 3263 -9 379 314 114 29 chr13 74403282 74403492 -45341406 + L3b LINE CR1 1332 1559 -24 201 267 0 17 chr13 74404701 74404761 -45340137 - L2 LINE L2 -7 3306 3248 1241 180 52 4 chr13 74404942 74405214 -45339684 + MER33 DNA MER1_type 5 289 -35 290 196 0 0 chr13 74405270 74405316 -45339582 + MER33 DNA MER1_type 279 324 0 182 377 0 13 chr13 74405514 74405591 -45339307 - L2 LINE L2 -10 3262 3187 6697 148 53 28 chr13 74405794 74406088 -45338810 - Tigger3b DNA MER2_type -1797 1231 946 2392 122 119 10 chr13 74406088 74406474 -45338424 - MSTA LTR MaLR 0 428 1 6697 148 53 28 chr13 74406474 74406565 -45338333 - Tigger3b DNA MER2_type -2082 946 859 1622 174 51 0 chr13 74406565 74406859 -45338039 - AluJo SINE Alu -3 309 1 6697 148 53 28 chr13 74406859 74407118 -45337780 - Tigger3b DNA MER2_type -2169 859 608 234 0 0 0 chr13 74407118 74407144 -45337754 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6697 148 53 28 chr13 74407144 74407697 -45337201 - Tigger3b DNA MER2_type -2420 608 1 568 251 22 45 chr13 74407872 74408051 -45336847 - MLT1K LTR MaLR -122 466 292 2034 138 0 0 chr13 74409967 74410288 -45334610 + AluSx SINE Alu 1 321 0 21 0 0 0 chr13 74410877 74410898 -45334000 + AT_rich Low_complexity Low_complexity 1 21 0 372 43 0 0 chr13 74411937 74411983 -45332915 + (TG)n Simple_repeat Simple_repeat 2 47 0 183 311 104 28 chr13 74412920 74413026 -45331872 - L2 LINE L2 -671 2643 2530 1025 204 111 33 chr13 74413101 74413499 -45331399 - MER69B DNA AcHobo -14 1212 784 2158 157 3 25 chr13 74413503 74413737 -45331161 + MLT1A1 LTR MaLR 10 235 -130 2353 123 16 16 chr13 74413737 74414112 -45330786 - THE1C LTR MaLR 0 375 1 2158 157 3 25 chr13 74414112 74414241 -45330657 + MLT1A1 LTR MaLR 235 365 0 1715 238 108 52 chr13 74414241 74414698 -45330200 - MER69B DNA AcHobo -467 759 250 1046 201 43 0 chr13 74414698 74414907 -45329991 - MER20 DNA MER1_type 0 219 2 1715 238 108 52 chr13 74414907 74415125 -45329773 - MER69B DNA AcHobo -976 250 46 883 133 0 90 chr13 74415656 74415822 -45329076 - AluJo/FRAM SINE Alu -8 304 154 507 188 10 10 chr13 74415822 74415923 -45328975 - AluJ/FLAM SINE Alu -211 101 1 22 35 0 0 chr13 74415962 74415991 -45328907 + AT_rich Low_complexity Low_complexity 1 29 0 413 241 103 9 chr13 74416352 74416468 -45328430 - L2 LINE L2 0 3313 3187 651 310 99 16 chr13 74416897 74417139 -45327759 - MIR SINE MIR 0 262 1 267 241 25 13 chr13 74417360 74417439 -45327459 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 432 130 0 0 chr13 74418430 74418499 -45326399 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 28 61 0 0 chr13 74419253 74419302 -45325596 + AT_rich Low_complexity Low_complexity 1 49 0 7587 187 20 8 chr13 74419467 74420229 -45324669 + L1MB2 LINE L1 3667 4419 -1752 2195 158 59 5 chr13 74420229 74420633 -45324265 + MSTB LTR MaLR 1 426 0 7587 187 20 8 chr13 74420633 74422340 -45322558 + L1MB2 LINE L1 4419 6164 -7 186 103 0 0 chr13 74423082 74423111 -45321787 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 646 328 66 31 chr13 74423971 74424484 -45320414 + L1MC4a LINE L1 5408 5938 -1870 470 253 100 75 chr13 74425752 74426246 -45318652 - MLT1J LTR MaLR -6 609 3 1462 228 40 8 chr13 74426895 74427272 -45317626 + MLT1C LTR MaLR 35 423 -44 2162 167 59 8 chr13 74427422 74427812 -45317086 - MSTA LTR MaLR 0 428 19 2355 92 3 0 chr13 74428699 74429002 -45315896 + AluSp SINE Alu 1 304 -9 216 0 0 0 chr13 74429976 74430000 -45314898 + (T)n Simple_repeat Simple_repeat 1 24 0 234 107 143 18 chr13 74430118 74430174 -45314724 + MER91 DNA MER1_type 1 63 -77 257 321 62 18 chr13 74430391 74430503 -45314395 + L2 LINE L2 3175 3291 -22 2331 80 3 7 chr13 74430576 74430875 -45314023 - AluSx SINE Alu -14 298 1 228 227 0 0 chr13 74431919 74431963 -45312935 + L2 LINE L2 3265 3308 -5 364 267 23 46 chr13 74433947 74434078 -45310820 + MIR3 SINE MIR 78 205 -3 421 327 148 15 chr13 74434443 74434645 -45310253 + MIR SINE MIR 22 250 -12 1082 192 57 85 chr13 74436478 74436608 -45308290 + MER2 DNA MER2_type 1 133 -211 1402 250 0 0 chr13 74436608 74436769 -45308129 - AluJo SINE Alu -20 292 129 420 20 0 0 chr13 74436769 74436818 -45308080 + (TG)n Simple_repeat Simple_repeat 2 50 0 1402 250 0 0 chr13 74436818 74436948 -45307950 - AluJo SINE Alu -182 130 1 1082 192 57 85 chr13 74436948 74437171 -45307727 + MER2 DNA MER2_type 133 344 0 418 278 91 34 chr13 74437837 74438013 -45306885 + MER5A DNA MER1_type 4 189 0 827 178 0 92 chr13 74438018 74438203 -45306695 + AluJb SINE Alu 137 304 -8 1729 163 0 4 chr13 74438499 74438775 -45306123 - AluJb SINE Alu -20 292 18 861 110 0 59 chr13 74438810 74438946 -45305952 - FLAM_C SINE Alu -5 128 1 1356 267 57 5 chr13 74438947 74439509 -45305389 + MER114 LTR ERV 57 647 -1 2247 91 7 32 chr13 74439810 74440119 -45304779 - AluSx SINE Alu -11 301 1 1854 164 3 20 chr13 74440340 74440644 -45304254 - AluSp SINE Alu -14 299 1 345 212 0 0 chr13 74441764 74441830 -45303068 + MER94 DNA DNA 69 134 0 235 291 0 70 chr13 74441850 74441936 -45302962 - L2 LINE L2 -1549 1765 1686 182 338 153 18 chr13 74442132 74442360 -45302538 - L2 LINE L2 -1106 2208 1950 204 345 60 43 chr13 74442431 74442663 -45302235 - L2 LINE L2 -1535 1779 1544 246 265 94 65 chr13 74442687 74442857 -45302041 + L2 LINE L2 3135 3309 -4 443 217 8 101 chr13 74443346 74443412 -45301486 + L2 LINE L2 3189 3239 -74 2017 142 20 43 chr13 74443412 74443764 -45301134 + MER2 DNA MER2_type 1 344 0 443 217 8 101 chr13 74443764 74443826 -45301072 + L2 LINE L2 3239 3305 -8 1922 216 82 7 chr13 74444037 74444477 -45300421 + MLT2B1 LTR ERVL 6 478 -42 317 131 16 0 chr13 74444477 74444538 -45300360 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 242 132 0 145 chr13 74444554 74444630 -45300268 + MLT2B1 LTR ERVL 456 520 0 248 240 0 0 chr13 74444945 74444995 -45299903 - L2 LINE L2 -1 3312 3263 2235 98 3 7 chr13 74445240 74445537 -45299361 - AluSq SINE Alu -17 296 1 280 153 130 66 chr13 74445608 74445723 -45299175 + MER34 LTR ERV1 433 537 -5 869 257 45 5 chr13 74445867 74446069 -45298829 + MIR SINE MIR 43 252 -10 286 329 143 39 chr13 74446613 74446844 -45298054 - MIR SINE MIR 0 262 8 192 143 0 0 chr13 74447116 74447135 -45297763 + (TCC)n Simple_repeat Simple_repeat 3 24 -13 1866 171 20 0 chr13 74447135 74447434 -45297464 - AluJo SINE Alu -7 305 1 192 143 0 0 chr13 74447434 74447449 -45297449 + (TCC)n Simple_repeat Simple_repeat 23 37 0 213 88 70 0 chr13 74449098 74449155 -45295743 + T-rich Low_complexity Low_complexity 1 61 0 492 283 63 80 chr13 74449155 74449581 -45295317 - MLT1K LTR MaLR -17 571 70 1924 138 3 10 chr13 74449634 74449930 -45294968 - AluSq SINE Alu -19 294 1 298 303 114 14 chr13 74449937 74450148 -45294750 + L2 LINE L2 2331 2562 -752 22 0 0 0 chr13 74450167 74450189 -45294709 + AT_rich Low_complexity Low_complexity 1 22 0 511 119 0 0 chr13 74450189 74450256 -45294642 - FLAM_A SINE Alu -25 117 51 21 36 0 0 chr13 74450397 74450425 -45294473 + AT_rich Low_complexity Low_complexity 1 28 0 706 285 62 13 chr13 74450505 74450832 -45294066 + MLT1I LTR MaLR 34 403 -6 25 0 0 0 chr13 74452535 74452560 -45292338 + AT_rich Low_complexity Low_complexity 1 25 0 758 213 87 0 chr13 74452790 74452940 -45291958 + MER97a DNA MER1_type? 17 179 -715 2334 97 0 3 chr13 74453669 74453969 -45290929 + AluSq SINE Alu 1 299 -14 396 264 19 82 chr13 74454006 74454165 -45290733 + MIR SINE MIR 67 215 -47 2152 171 11 3 chr13 74455047 74455409 -45289489 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr13 74455622 74455645 -45289253 + AT_rich Low_complexity Low_complexity 1 23 0 2200 117 7 3 chr13 74455708 74456016 -45288882 - AluSx SINE Alu -3 309 1 1814 204 26 12 chr13 74456135 74456396 -45288502 + L1MA10 LINE L1 5906 6177 -157 1975 156 0 3 chr13 74456396 74456703 -45288195 + AluSx SINE Alu 1 306 -6 1814 204 26 12 chr13 74456703 74456863 -45288035 + L1MA10 LINE L1 6177 6333 -1 1179 273 75 18 chr13 74456958 74457508 -45287390 + HAL1 LINE L1 727 1307 -1200 8798 155 38 15 chr13 74457546 74459373 -45285525 + L1MA4 LINE L1 3484 5404 -896 2510 50 0 3 chr13 74459373 74459676 -45285222 - AluY SINE Alu -9 302 1 8798 155 38 15 chr13 74459676 74460589 -45284309 + L1MA4 LINE L1 5404 6294 -6 1663 226 120 53 chr13 74460605 74461380 -45283518 + HAL1 LINE L1 1350 2176 -331 1306 171 122 171 chr13 74462675 74463085 -45281813 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr13 74465139 74465161 -45279737 + AT_rich Low_complexity Low_complexity 1 22 0 2051 120 14 3 chr13 74465313 74465604 -45279294 - AluSx SINE Alu -18 294 1 504 232 99 0 chr13 74465847 74465989 -45278909 + L1ME3 LINE L1 5999 6154 -8 259 311 57 9 chr13 74467499 74467605 -45277293 - MIR SINE MIR -46 216 106 234 0 0 0 chr13 74468314 74468340 -45276558 + (CAA)n Simple_repeat Simple_repeat 2 27 0 398 321 86 23 chr13 74468422 74468643 -45276255 + MIR SINE MIR 25 259 -3 276 53 0 0 chr13 74469134 74469172 -45275726 + (TG)n Simple_repeat Simple_repeat 2 39 0 291 178 222 44 chr13 74470220 74470310 -45274588 + MIR3 SINE MIR 86 191 -17 521 289 20 7 chr13 74470527 74470679 -45274219 - MER5A DNA MER1_type 0 189 36 2364 92 0 0 chr13 74470714 74471009 -45273889 + AluSg SINE Alu 1 295 -15 211 278 97 0 chr13 74471366 74471438 -45273460 - MIR SINE MIR -65 197 119 441 224 92 69 chr13 74471449 74471623 -45273275 - MER5B DNA MER1_type 0 178 1 191 258 30 30 chr13 74472117 74472183 -45272715 + MIR SINE MIR 89 154 -108 27 62 0 0 chr13 74472288 74472336 -45272562 + AT_rich Low_complexity Low_complexity 1 48 0 33 56 0 0 chr13 74472355 74472409 -45272489 + AT_rich Low_complexity Low_complexity 1 54 0 191 324 72 18 chr13 74472597 74472708 -45272190 - L2 LINE L2 -428 2886 2770 1370 196 29 3 chr13 74472711 74473027 -45271871 + MER33 DNA MER1_type 1 324 0 281 223 96 43 chr13 74473130 74473224 -45271674 + MER58C DNA MER1_type 117 215 0 594 260 153 0 chr13 74473247 74473397 -45271501 + MER5A DNA MER1_type 16 188 -1 465 261 18 36 chr13 74473653 74473818 -45271080 + MER112 DNA MER1_type 1 162 -98 4088 112 5 43 chr13 74473986 74474653 -45270245 + L1PA15 LINE L1 5521 6161 -4 385 442 12 16 chr13 74474960 74475218 -45269680 + L1MEc LINE L1 211 467 -5929 206 340 62 0 chr13 74475721 74475818 -45269080 - L2 LINE L2 -33 3280 3178 861 179 6 0 chr13 74475995 74476151 -45268747 - L1MA10 LINE L1 -9 6325 6169 606 213 103 3 chr13 74476156 74476338 -45268560 - L1ME2 LINE L1 -142 6022 5818 2186 137 3 34 chr13 74476338 74476479 -45268419 + L1PA16 LINE L1 5795 5939 -227 2181 103 7 3 chr13 74476479 74476781 -45268117 + AluSq SINE Alu 1 303 -10 2186 137 3 34 chr13 74476781 74477018 -45267880 + L1PA16 LINE L1 5939 6161 -5 196 290 113 0 chr13 74479198 74479260 -45265638 + L2 LINE L2 3198 3266 -6 1723 186 0 0 chr13 74479690 74479975 -45264923 + AluJb SINE Alu 2 286 -26 214 95 48 0 chr13 74480304 74480346 -45264552 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 889 230 37 5 chr13 74480620 74480837 -45264061 + MER58A DNA MER1_type 1 224 0 735 174 5 74 chr13 74480860 74481050 -45263848 - MER20 DNA MER1_type -5 214 38 241 180 0 0 chr13 74481702 74481752 -45263146 + L1MC4 LINE L1 6652 6701 -1341 243 61 0 0 chr13 74482790 74482823 -45262075 + (A)n Simple_repeat Simple_repeat 1 33 0 238 173 0 19 chr13 74483361 74483413 -45261485 - MIR SINE MIR -114 148 98 1839 163 7 0 chr13 74483627 74483915 -45260983 - AluJb SINE Alu -22 290 1 21 0 0 0 chr13 74484196 74484217 -45260681 + AT_rich Low_complexity Low_complexity 1 21 0 3335 179 39 21 chr13 74484217 74484928 -45259970 - L1MB4 LINE L1 -6 6174 5451 22 35 0 0 chr13 74484958 74484987 -45259911 + AT_rich Low_complexity Low_complexity 1 29 0 1805 166 0 19 chr13 74485124 74485437 -45259461 - AluJb SINE Alu -5 307 1 1000 128 27 0 chr13 74485911 74486060 -45258838 + AluJo SINE Alu 1 153 -159 1984 159 9 15 chr13 74486373 74486712 -45258186 + MER1B DNA MER1_type 1 337 0 2360 85 3 0 chr13 74486926 74487221 -45257677 - AluSp SINE Alu -17 296 1 204 235 0 20 chr13 74487978 74488029 -45256869 + GA-rich Low_complexity Low_complexity 2 51 0 288 301 38 30 chr13 74488442 74488976 -45255922 - L1MEc LINE L1 -2792 3423 2886 329 289 72 33 chr13 74488977 74489129 -45255769 - L1MEc LINE L1 -3382 2833 2676 317 264 179 5 chr13 74489145 74489357 -45255541 - L1MEc LINE L1 -3644 2571 2323 2905 127 2 2 chr13 74489649 74490068 -45254830 - L1P3 LINE L1 -6032 429 11 410 265 60 94 chr13 74490554 74490852 -45254046 - L1MEc LINE L1 -4837 1559 1272 302 232 56 80 chr13 74490999 74491124 -45253774 - L2 LINE L2 -1 3312 3191 182 246 29 43 chr13 74491189 74491258 -45253640 - MIR SINE MIR -4 258 191 2383 226 123 6 chr13 74491632 74492296 -45252602 + L1ME1 LINE L1 70 811 -5585 * 5218 234 34 16 chr13 74492291 74493870 -45251028 + L1ME1 LINE L1 2887 4493 -1722 365 283 0 66 chr13 74493865 74494017 -45250881 + L1ME1 LINE L1 5958 6099 -136 * 3033 139 52 28 chr13 74494034 74494616 -45250282 - L1MA8 LINE L1 -5 6286 5691 581 253 7 7 chr13 74494618 74494772 -45250126 + L1MA10 LINE L1 6180 6333 -1 186 274 20 0 chr13 74494872 74494923 -45249975 + L2 LINE L2 3262 3313 0 232 363 0 0 chr13 74495137 74495217 -45249681 - MIR SINE MIR -109 153 74 267 281 30 67 chr13 74495347 74495511 -45249387 + MLT1J2 LTR MaLR 4 161 -289 989 227 9 8 chr13 74495521 74495765 -45249133 - MLT2B1 LTR ERVL -170 244 6 13446 161 19 14 chr13 74495770 74498018 -45246880 - ERVL-B1 LTR ERVL -7 5757 3498 3187 163 31 3 chr13 74498163 74498735 -45246163 - L1PA16 LINE L1 -5 6161 5574 806 226 54 29 chr13 74499280 74499519 -45245379 - L1ME2 LINE L1 -9 6155 5911 277 353 22 43 chr13 74499833 74499972 -45244926 - L2 LINE L2 -10 3303 3168 642 291 140 79 chr13 74500155 74500905 -45243993 - L2 LINE L2 -338 2976 2181 2256 110 0 10 chr13 74501040 74501350 -45243548 + AluSx SINE Alu 1 307 -5 246 296 65 0 chr13 74501357 74501465 -45243433 - MER103 DNA DNA -33 133 19 289 353 65 16 chr13 74502049 74502233 -45242665 + L2 LINE L2 2186 2378 -936 423 298 18 0 chr13 74502316 74502430 -45242468 - L2 LINE L2 -4 3309 3194 335 314 53 62 chr13 74502439 74502761 -45242137 + L2 LINE L2 2434 2752 -562 874 273 116 29 chr13 74502975 74503286 -45241612 - MER93a LTR ERV1 -4 398 61 1180 134 37 23 chr13 74503503 74503720 -45241178 + L1PA16 LINE L1 5946 6165 -1 23 0 0 0 chr13 74503720 74503743 -45241155 + AT_rich Low_complexity Low_complexity 1 23 0 882 212 138 61 chr13 74503825 74504136 -45240762 - MER58B DNA MER1_type -3 338 4 240 312 121 19 chr13 74505698 74505855 -45239043 - L2 LINE L2 -4 3309 3137 819 172 0 22 chr13 74505928 74506062 -45238836 - FLAM_C SINE Alu -2 131 1 1314 272 67 23 chr13 74506201 74506635 -45238263 + L2 LINE L2 2067 2519 -795 1792 206 62 22 chr13 74506635 74507131 -45237767 + L1MD3 LINE L1 7468 7983 -12 1327 262 54 109 chr13 74507135 74507668 -45237230 + L2 LINE L2 2505 2979 -334 1757 162 44 7 chr13 74507668 74507964 -45236934 + AluJo SINE Alu 3 309 -3 1327 262 54 109 chr13 74507964 74508281 -45236617 + L2 LINE L2 2979 3312 -1 299 330 39 0 chr13 74508417 74508520 -45236378 - L2 LINE L2 -982 2332 2226 2305 92 3 0 chr13 74510443 74510736 -45234162 + AluSx SINE Alu 1 294 -18 204 245 0 0 chr13 74511646 74511699 -45233199 + (TA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr13 74512262 74512283 -45232615 + AT_rich Low_complexity Low_complexity 1 21 0 1333 146 30 0 chr13 74513264 74513291 -45231607 + AluJb SINE Alu 95 120 -192 216 0 0 0 chr13 74513291 74513315 -45231583 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1333 146 30 0 chr13 74513315 74513486 -45231412 + AluJb SINE Alu 120 299 -13 2175 101 0 30 chr13 74514255 74514551 -45230347 - AluSx SINE Alu -9 303 17 272 289 269 15 chr13 74514678 74514875 -45230023 + MIR SINE MIR 15 261 -1 335 260 130 26 chr13 74515097 74515251 -45229647 + L2 LINE L2 2873 3042 -230 397 250 32 16 chr13 74516220 74516344 -45228554 + MLT1J1 LTR MaLR 195 320 -126 353 216 127 52 chr13 74516449 74516583 -45228315 - L2 LINE L2 -11 3302 3159 783 138 75 11 chr13 74518492 74518666 -45226232 + L1MB7 LINE L1 5995 6179 -5 402 21 0 0 chr13 74519065 74519112 -45225786 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 194 0 39 0 chr13 74519417 74519443 -45225455 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1896 88 0 4 chr13 74519452 74519692 -45225206 - AluSc SINE Alu -48 261 23 1967 139 84 32 chr13 74520051 74520397 -45224501 - THE1B LTR MaLR 0 364 1 10754 93 55 6 chr13 74520397 74521903 -45222995 - THE1B-int LTR MaLR 0 1580 1 1796 157 32 39 chr13 74521903 74522246 -45222652 - THE1B LTR MaLR -17 411 1 409 282 39 34 chr13 74522291 74522497 -45222401 - L1ME3A LINE L1 -342 5828 5622 1764 175 7 3 chr13 74522517 74522803 -45222095 - AluJb SINE Alu -13 299 13 475 297 106 47 chr13 74523037 74523397 -45221501 - L2 LINE L2 -1 3312 2932 2089 138 0 10 chr13 74523485 74523797 -45221101 + AluSx SINE Alu 1 309 -3 246 338 49 0 chr13 74524636 74524760 -45220138 + MIR SINE MIR 10 143 -65 24 0 0 0 chr13 74526402 74526426 -45218472 + AT_rich Low_complexity Low_complexity 1 24 0 3123 101 171 7 chr13 74526747 74527284 -45217614 + MER51A LTR ERV1 10 634 0 251 321 114 0 chr13 74527764 74527904 -45216994 + MIR SINE MIR 1 156 -106 2208 119 0 0 chr13 74528207 74528501 -45216397 - AluSc SINE Alu -15 294 1 3413 103 24 0 chr13 74530620 74531126 -45213772 + L1PA15 LINE L1 5607 6124 -41 381 239 109 49 chr13 74531675 74531859 -45213039 - MLT1J1 LTR MaLR -7 439 245 867 128 8 8 chr13 74531873 74532006 -45212892 - FLAM_C SINE Alu 0 133 1 2337 88 0 0 chr13 74533116 74533412 -45211486 + AluY SINE Alu 1 296 -15 191 313 62 0 chr13 74533480 74533544 -45211354 - L2 LINE L2 -2 3311 3244 809 294 190 19 chr13 74533545 74534005 -45210893 - L2 LINE L2 0 3313 2777 607 321 81 9 chr13 74534008 74534229 -45210669 + MLT1H1 LTR MaLR 65 301 -254 1050 217 23 27 chr13 74534315 74534578 -45210320 + MSTD LTR MaLR 135 396 0 379 200 209 0 chr13 74534627 74534732 -45210166 + MLT1H1 LTR MaLR 421 547 -8 1201 264 221 10 chr13 74534740 74535342 -45209556 - L2 LINE L2 -967 2347 1619 402 314 61 45 chr13 74535337 74535658 -45209240 - L2 LINE L2 -126 3187 2853 * 2421 94 0 3 chr13 74535658 74535967 -45208931 + AluSc SINE Alu 1 308 -1 402 314 61 45 chr13 74535967 74536112 -45208786 - L2 LINE L2 -460 2853 2712 540 157 37 0 chr13 74536998 74537106 -45207792 - L1MA4 LINE L1 -11 6289 6178 21 0 0 0 chr13 74537762 74537783 -45207115 + AT_rich Low_complexity Low_complexity 1 21 0 360 334 109 71 chr13 74538200 74538511 -45206387 - L2 LINE L2 0 3272 2950 266 328 175 11 chr13 74538894 74539077 -45205821 - L2 LINE L2 -917 2397 2185 2453 77 3 0 chr13 74539139 74539437 -45205461 + AluSp SINE Alu 1 299 -14 26 0 0 0 chr13 74539583 74539609 -45205289 + AT_rich Low_complexity Low_complexity 1 26 0 276 100 0 0 chr13 74542189 74542229 -45202669 + (TG)n Simple_repeat Simple_repeat 2 41 0 186 43 0 0 chr13 74544309 74544332 -45200566 + (TTC)n Simple_repeat Simple_repeat 3 25 0 562 337 130 41 chr13 74544952 74545857 -45199041 + L2 LINE L2 2203 3180 -92 215 127 36 18 chr13 74545887 74545897 -45199001 + (TAAA)n Simple_repeat Simple_repeat 3 11 -47 2299 91 0 0 chr13 74545897 74546182 -45198716 + AluSc SINE Alu 1 285 -24 215 127 36 18 chr13 74546182 74546226 -45198672 + (TAAA)n Simple_repeat Simple_repeat 11 58 0 227 296 148 0 chr13 74546390 74546471 -45198427 - MIR3 SINE MIR -17 191 99 279 230 23 74 chr13 74546525 74546634 -45198264 - L1MC/D LINE L1 -801 5345 5232 429 20 0 0 chr13 74546634 74546684 -45198214 + (CA)n Simple_repeat Simple_repeat 1 50 0 342 0 0 0 chr13 74546683 74546721 -45198177 + (TA)n Simple_repeat Simple_repeat 2 39 0 * 279 230 23 74 chr13 74546684 74546723 -45198175 - L1MC/D LINE L1 -914 5232 5400 2088 110 3 7 chr13 74546723 74547005 -45197893 - AluSx SINE Alu -31 281 1 279 230 23 74 chr13 74547005 74547175 -45197723 - L1MC/D LINE L1 -745 5401 5224 * 391 320 44 32 chr13 74547170 74547493 -45197405 + L1ME3A LINE L1 5582 5912 -258 213 269 19 0 chr13 74548130 74548182 -45196716 - MIR3 SINE MIR -51 157 105 1746 188 14 0 chr13 74548885 74549173 -45195725 + AluJb SINE Alu 1 292 -20 402 309 7 44 chr13 74549564 74549633 -45195265 + L2 LINE L2 3134 3197 -75 1476 88 60 9 chr13 74549633 74549849 -45195049 + MER30 DNA MER1_type 4 230 0 402 309 7 44 chr13 74549849 74549915 -45194983 + L2 LINE L2 3197 3264 -8 1263 167 112 9 chr13 74550994 74551324 -45193574 - L1MC2 LINE L1 -1 6343 5980 306 296 116 25 chr13 74552403 74552602 -45192296 + HAL1 LINE L1 983 1199 -1308 186 43 0 0 chr13 74552746 74552769 -45192129 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2161 106 3 0 chr13 74552769 74553054 -45191844 - AluY SINE Alu -22 289 1 580 162 52 29 chr13 74553220 74553356 -45191542 - Charlie1 DNA MER1_type -1746 1015 877 1771 138 20 17 chr13 74554305 74554603 -45190295 - L1PB3 LINE L1 -7 6147 5849 287 331 32 40 chr13 74555819 74555943 -45188955 - MIR3 SINE MIR -5 203 81 235 197 91 30 chr13 74555994 74556060 -45188838 - MIR SINE MIR -107 101 32 263 390 0 0 chr13 74556178 74556278 -45188620 - MIR SINE MIR -58 150 51 812 153 0 36 chr13 74556748 74556885 -45188013 - FLAM_C SINE Alu -1 132 1 209 338 13 26 chr13 74558877 74558954 -45185944 - L2 LINE L2 -3 3310 3235 209 317 83 26 chr13 74559187 74559324 -45185574 - MIR3 SINE MIR -83 125 3 236 317 12 79 chr13 74559638 74559802 -45185096 + L2 LINE L2 3161 3313 0 649 310 65 3 chr13 74560088 74560327 -45184571 - MIR SINE MIR -10 252 2 205 228 25 63 chr13 74560513 74560592 -45184306 + MIR SINE MIR 100 175 -87 636 286 66 0 chr13 74561210 74561406 -45183492 + MIR SINE MIR 12 220 -42 2069 117 0 0 chr13 74561407 74561737 -45183161 + AluSx SINE Alu 1 330 0 394 314 30 54 chr13 74562466 74562800 -45182098 + L1ME LINE L1 51 376 -5694 2252 118 0 3 chr13 74563260 74563564 -45181334 + AluSx SINE Alu 1 303 -9 1153 303 66 34 chr13 74563591 74564185 -45180713 + L1ME LINE L1 467 1041 -5220 1802 175 3 3 chr13 74564185 74564482 -45180416 - AluJo SINE Alu -15 297 1 1153 303 66 34 chr13 74564482 74564874 -45180024 + L1ME LINE L1 1041 1699 -4562 287 203 81 27 chr13 74564914 74564988 -45179910 - MIR SINE MIR -13 249 172 442 281 80 44 chr13 74565045 74565294 -45179604 + MIR SINE MIR 5 262 0 195 69 0 0 chr13 74565666 74565695 -45179203 + (A)n Simple_repeat Simple_repeat 1 29 0 2708 82 30 0 chr13 74566186 74566550 -45178348 + THE1C LTR MaLR 1 375 0 1698 195 0 3 chr13 74568392 74568679 -45176219 + AluJo SINE Alu 1 286 -26 495 0 0 0 chr13 74568683 74568738 -45176160 + (TG)n Simple_repeat Simple_repeat 2 56 0 1602 156 111 15 chr13 74569554 74569887 -45175011 - MLT1A1 LTR MaLR 0 365 1 2533 10 0 17 chr13 74570078 74570392 -45174506 + AluYa5 SINE Alu 1 309 0 278 314 0 0 chr13 74570495 74570565 -45174333 - MIR SINE MIR -187 75 6 661 279 99 35 chr13 74571451 74571763 -45173135 + L3b LINE CR1 1137 1468 -115 22 0 0 0 chr13 74572833 74572855 -45172043 + AT_rich Low_complexity Low_complexity 1 22 0 1103 96 0 6 chr13 74572881 74572897 -45172001 - L1PB2 LINE L1 -198 5953 5938 615 227 5 38 chr13 74572897 74573082 -45171816 - L1MA4A LINE L1 -366 5937 5759 331 190 0 20 chr13 74573105 74573205 -45171693 + (TA)n Simple_repeat Simple_repeat 2 99 0 995 112 0 135 chr13 74573210 74573425 -45171473 - L1P5 LINE L1 -387 5764 5579 24 0 0 0 chr13 74573659 74573683 -45171215 + AT_rich Low_complexity Low_complexity 1 24 0 353 265 232 22 chr13 74574869 74575054 -45169844 + MIR SINE MIR 36 259 -3 2110 146 0 0 chr13 74575847 74576156 -45168742 - AluSx SINE Alu -3 309 1 511 303 119 0 chr13 74576638 74576823 -45168075 + MIR SINE MIR 28 234 -28 669 274 169 45 chr13 74576893 74577454 -45167444 + L1ME4a LINE L1 5327 5957 -164 1484 275 97 70 chr13 74577460 74578016 -45166882 + L2 LINE L2 2292 2886 -427 2139 124 7 0 chr13 74578016 74578323 -45166575 + AluSx SINE Alu 2 310 -2 1484 275 97 70 chr13 74578323 74578762 -45166136 + L2 LINE L2 2886 3312 -1 493 247 121 0 chr13 74579341 74579507 -45165391 - MIR SINE MIR -57 205 20 200 248 94 68 chr13 74580042 74580159 -45164739 - MIR SINE MIR -52 210 91 2172 113 7 19 chr13 74581585 74581894 -45163004 + AluSx SINE Alu 3 307 -5 252 170 0 0 chr13 74582027 74582080 -45162818 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 308 287 144 60 chr13 74582657 74582824 -45162074 - MIR SINE MIR -68 194 14 222 191 0 0 chr13 74583764 74583811 -45161087 + (TGG)n Simple_repeat Simple_repeat 1 47 0 2287 99 7 0 chr13 74583921 74584214 -45160684 - AluSp SINE Alu -18 295 1 23 33 0 0 chr13 74584381 74584411 -45160487 + AT_rich Low_complexity Low_complexity 1 30 0 2342 98 3 0 chr13 74584960 74585267 -45159631 - AluSx SINE Alu -4 308 1 479 273 67 46 chr13 74585490 74585718 -45159180 + MIR SINE MIR 1 229 -33 222 150 0 0 chr13 74586412 74586452 -45158446 + (GA)n Simple_repeat Simple_repeat 2 41 0 706 281 133 54 chr13 74587547 74588180 -45156718 - HAL1 LINE L1 -91 2416 1734 2751 137 9 2 chr13 74588612 74589058 -45155840 - L1PB4 LINE L1 -1 6155 5707 282 238 25 0 chr13 74589523 74589603 -45155295 + L1MA10 LINE L1 6246 6327 -7 795 164 15 22 chr13 74589770 74589904 -45154994 - FLAM_A SINE Alu 0 133 1 581 209 0 9 chr13 74590589 74590699 -45154199 - FLAM_C SINE Alu -30 113 5 832 298 18 0 chr13 74590828 74591056 -45153842 - MIR SINE MIR 0 262 31 2266 112 0 0 chr13 74591157 74591442 -45153456 - AluSc SINE Alu -24 285 1 1075 130 13 0 chr13 74591528 74591682 -45153216 + AluSg/x SINE Alu 137 292 -20 192 161 74 0 chr13 74591774 74591855 -45153043 + (TA)n Simple_repeat Simple_repeat 1 87 0 1387 218 102 21 chr13 74591920 74592351 -45152547 - MLT1D LTR MaLR -9 496 31 615 76 34 119 chr13 74592483 74592601 -45152297 - MSTA LTR MaLR 0 428 321 1642 180 61 15 chr13 74592601 74592929 -45151969 + MER61A LTR ERV1 1 343 0 1907 198 38 23 chr13 74592929 74593409 -45151489 + MER61A-int LTR ERV1 1 487 -4730 20582 103 31 14 chr13 74593415 74595001 -45149897 + MER61A-int LTR ERV1 1320 2877 -2340 2415 84 0 3 chr13 74595001 74595300 -45149598 + AluY SINE Alu 1 298 -13 20582 103 31 14 chr13 74595300 74595616 -45149282 + MER61A-int LTR ERV1 2877 3186 -2031 2036 105 54 0 chr13 74595616 74595892 -45149006 + AluSc SINE Alu 1 291 -18 20582 103 31 14 chr13 74595892 74596168 -45148730 + MER61A-int LTR ERV1 3186 3456 -1761 198 0 0 0 chr13 74596168 74596190 -45148708 + (TTG)n Simple_repeat Simple_repeat 2 23 0 20582 103 31 14 chr13 74596190 74597727 -45147171 + MER61A-int LTR ERV1 3456 5217 0 1747 153 54 24 chr13 74597727 74598060 -45146838 + MER61A LTR ERV1 1 343 0 1600 165 16 41 chr13 74598069 74598499 -45146399 - LTR12 LTR ERV1 -230 484 1 1390 138 101 11 chr13 74598506 74598782 -45146116 - MSTA LTR MaLR -127 301 1 753 198 0 0 chr13 74598913 74599039 -45145859 - FLAM_C SINE Alu -17 126 1 198 71 0 0 chr13 74599257 74599285 -45145613 + (CA)n Simple_repeat Simple_repeat 1 28 0 321 268 35 61 chr13 74600683 74600911 -45143987 + L1ME LINE L1 5547 5768 -353 617 242 11 2 chr13 74601017 74601299 -45143599 - LTR16B LTR ERVL -132 332 1 23 78 0 0 chr13 74601384 74601435 -45143463 + AT_rich Low_complexity Low_complexity 1 51 0 320 270 36 7 chr13 74602233 74602370 -45142528 - MER103 DNA DNA -7 159 19 197 300 75 12 chr13 74602477 74602557 -45142341 - MIR SINE MIR -87 121 37 2247 99 20 0 chr13 74604232 74604353 -45140545 + AluSx SINE Alu 3 120 -192 189 0 0 0 chr13 74604353 74604374 -45140524 + (CA)n Simple_repeat Simple_repeat 2 22 0 2247 99 20 0 chr13 74604374 74604545 -45140353 + AluSx SINE Alu 120 301 -11 24909 33 3 0 chr13 74605424 74609380 -45135518 - L1PA4 LINE L1 0 6155 2188 244 313 131 28 chr13 74609553 74609729 -45135169 + MIR SINE MIR 34 227 -35 535 84 0 0 chr13 74609757 74609828 -45135070 - AluSc SINE Alu -74 235 165 429 250 0 81 chr13 74609880 74610028 -45134870 - Charlie1 DNA MER1_type -2625 136 1 6238 66 11 2 chr13 74610321 74611337 -45133561 - L1PA8A LINE L1 -27 6104 5082 2276 98 0 16 chr13 74611344 74611660 -45133238 - AluY SINE Alu 0 311 1 29 0 0 0 chr13 74611668 74611697 -45133201 + AT_rich Low_complexity Low_complexity 1 29 0 5788 110 14 0 chr13 74612416 74612497 -45132401 + L1PA13 LINE L1 4918 4996 -1167 1829 166 7 7 chr13 74612497 74612792 -45132106 + AluJb SINE Alu 1 295 -17 5788 110 14 0 chr13 74612792 74612881 -45132017 + L1PA13 LINE L1 4996 5082 -1081 2658 86 14 0 chr13 74612881 74613231 -45131667 - THE1A LTR MaLR 0 355 1 5788 110 14 0 chr13 74613231 74614310 -45130588 + L1PA13 LINE L1 5082 6160 -3 244 286 62 9 chr13 74614759 74614871 -45130027 + MER103 DNA DNA 3 120 -46 29 0 0 0 chr13 74615406 74615435 -45129463 + AT_rich Low_complexity Low_complexity 1 29 0 2726 160 32 9 chr13 74615435 74615960 -45128938 - L1MA6 LINE L1 -1 6299 5763 1228 176 68 97 chr13 74616258 74616610 -45128288 + MER2 DNA MER2_type 3 344 0 2308 86 3 16 chr13 74616675 74616989 -45127909 - AluSp SINE Alu -3 310 1 229 275 128 20 chr13 74617005 74617256 -45127642 + L1MC5 LINE L1 7249 7526 -435 318 254 42 0 chr13 74618681 74618752 -45126146 - L2 LINE L2 -6 3307 3234 543 299 70 27 chr13 74619437 74619624 -45125274 + MER91A DNA MER1_type 1 195 -1 351 0 0 0 chr13 74620238 74620277 -45124621 + (CA)n Simple_repeat Simple_repeat 2 40 0 2003 123 13 29 chr13 74620461 74620771 -45124127 + AluSc SINE Alu 1 305 -4 21 57 0 0 chr13 74620995 74621030 -45123868 + AT_rich Low_complexity Low_complexity 1 35 0 5734 140 19 4 chr13 74621398 74622983 -45121915 + L1PB2 LINE L1 4540 6149 -2 2285 107 0 3 chr13 74623008 74623306 -45121592 - AluSg SINE Alu -1 309 13 1530 201 7 14 chr13 74623485 74623793 -45121105 + AluJo SINE Alu 1 306 0 2490 80 0 3 chr13 74624364 74624677 -45120221 - AluSq SINE Alu -1 312 1 355 253 0 0 chr13 74624697 74624784 -45120114 + MER63A DNA MER1_type 121 207 -3 24 0 0 0 chr13 74625441 74625465 -45119433 + AT_rich Low_complexity Low_complexity 1 24 0 529 223 49 27 chr13 74625757 74625941 -45118957 - MER53 DNA DNA -1 188 1 769 224 79 6 chr13 74625998 74626163 -45118735 - MER45A DNA AcHobo 0 178 2 2321 92 0 0 chr13 74626312 74626607 -45118291 - AluSc SINE Alu -14 295 1 257 349 160 0 chr13 74626618 74626724 -45118174 + L2 LINE L2 3150 3272 0 2216 116 0 0 chr13 74626969 74627262 -45117636 - AluSg SINE Alu -17 293 1 250 283 133 18 chr13 74628903 74629016 -45115882 + MIR SINE MIR 17 142 -66 1541 299 44 28 chr13 74629183 74629860 -45115038 - MER115 DNA AcHobo -3 4028 2 189 147 0 0 chr13 74629984 74630018 -45114880 + (TG)n Simple_repeat Simple_repeat 2 35 0 473 336 102 42 chr13 74630083 74630583 -45114315 + L2 LINE L2 2090 2619 -695 596 196 29 23 chr13 74630637 74630810 -45114088 + L1MC4a LINE L1 5796 5969 -1839 30 97 0 0 chr13 74630962 74631055 -45113843 + AT_rich Low_complexity Low_complexity 1 93 0 225 240 0 0 chr13 74631600 74631675 -45113223 + (TGAA)n Simple_repeat Simple_repeat 4 78 0 246 32 0 0 chr13 74633024 74633055 -45111843 + (CA)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr13 74635458 74635483 -45109415 + (TCC)n Simple_repeat Simple_repeat 3 27 0 208 325 65 41 chr13 74635931 74636054 -45108844 - MIR SINE MIR -135 127 2 2309 66 0 0 chr13 74636278 74636579 -45108319 + L1PA13 LINE L1 5863 6163 0 216 279 0 0 chr13 74637128 74637171 -45107727 - MER5A DNA MER1_type 0 189 147 708 283 12 0 chr13 74637171 74637337 -45107561 - MER5A DNA MER1_type -21 168 1 541 333 50 38 chr13 74637943 74638363 -45106535 + ERVL LTR ERVL 5007 5431 -333 495 293 77 62 chr13 74638491 74638523 -45106375 + L2 LINE L2 2971 3001 -312 2102 106 39 3 chr13 74638523 74638807 -45106091 - AluSq SINE Alu -19 294 1 495 293 77 62 chr13 74638807 74639112 -45105786 + L2 LINE L2 3001 3313 0 742 291 69 45 chr13 74639360 74639784 -45105114 - L2 LINE L2 -6 3307 2797 2284 178 29 7 chr13 74639784 74640201 -45104697 + MSTB LTR MaLR 1 426 0 742 291 69 45 chr13 74640201 74640313 -45104585 - L2 LINE L2 -516 2797 2689 438 207 34 95 chr13 74640322 74640501 -45104397 + HAL1 LINE L1 9 176 -2331 480 355 82 28 chr13 74640530 74640921 -45103977 + HAL1 LINE L1 276 687 -1820 478 257 112 15 chr13 74641012 74641351 -45103547 + HAL1 LINE L1 819 1190 -1317 803 274 66 13 chr13 74641395 74641774 -45103124 + HAL1 LINE L1 1249 1647 -860 384 279 0 14 chr13 74641952 74642092 -45102806 + HAL1 LINE L1 2227 2364 -143 561 308 181 14 chr13 74642235 74642583 -45102315 - L2 LINE L2 -624 2690 2285 1277 216 98 14 chr13 74642647 74643003 -45101895 + MLT1C LTR MaLR 82 467 0 571 341 106 36 chr13 74643042 74643570 -45101328 - L2 LINE L2 -1064 2250 1686 1193 155 68 9 chr13 74643585 74643897 -45101001 - LOR1a LTR ERV1 0 497 97 447 309 107 32 chr13 74643908 74644160 -45100738 - L2 LINE L2 -2680 634 364 287 188 24 35 chr13 74644238 74644323 -45100575 + MER69 DNA AcHobo 2443 2526 0 211 271 43 14 chr13 74644378 74644448 -45100450 - L2 LINE L2 -2973 341 270 435 199 51 32 chr13 74644714 74644870 -45100028 + L1M4 LINE L1 5121 5279 -867 183 384 176 0 chr13 74645035 74645194 -45099704 - MIR3 SINE MIR -9 199 13 300 208 109 40 chr13 74646338 74646439 -45098459 - L1ME4a LINE L1 -26 6095 5988 581 307 66 20 chr13 74646440 74647042 -45097856 - L1ME4a LINE L1 -183 5938 5309 200 182 0 0 chr13 74647916 74647949 -45096949 + GA-rich Low_complexity Low_complexity 4 36 0 2368 91 0 0 chr13 74648146 74648443 -45096455 + AluSx SINE Alu 1 297 -15 459 224 30 37 chr13 74649020 74649154 -45095744 + MER94 DNA DNA 1 133 -1 248 318 234 0 chr13 74649617 74649771 -45095127 - MIR SINE MIR -59 203 14 575 223 99 0 chr13 74650732 74650853 -45094045 - FLAM_A SINE Alu 0 133 1 21 71 0 0 chr13 74650898 74650940 -45093958 + AT_rich Low_complexity Low_complexity 1 42 0 187 276 61 51 chr13 74651220 74651318 -45093580 + L2 LINE L2 1798 1896 -1418 239 295 137 32 chr13 74651435 74651530 -45093368 - L2 LINE L2 -13 3300 3196 2303 101 13 0 chr13 74652028 74652336 -45092562 - AluSx SINE Alu 0 312 1 200 213 82 49 chr13 74652540 74652601 -45092297 + L2 LINE L2 3174 3236 -36 191 353 59 59 chr13 74653068 74653170 -45091728 + L2 LINE L2 3167 3268 -4 2800 9 0 16 chr13 74653342 74653658 -45091240 - AluYa5 SINE Alu 0 311 1 1628 159 108 15 chr13 74653849 74654183 -45090715 + MLT1A1 LTR MaLR 1 365 0 495 0 0 0 chr13 74654999 74655054 -45089844 + (CA)n Simple_repeat Simple_repeat 2 56 0 1698 195 0 3 chr13 74655058 74655345 -45089553 - AluJo SINE Alu -26 286 1 2708 82 30 0 chr13 74657187 74657551 -45087347 - THE1C LTR MaLR 0 375 1 195 69 0 0 chr13 74658042 74658071 -45086827 + (T)n Simple_repeat Simple_repeat 1 29 0 453 291 72 44 chr13 74658443 74658694 -45086204 - MIR SINE MIR 0 262 5 287 203 81 27 chr13 74658751 74658825 -45086073 + MIR SINE MIR 172 249 -13 1153 303 66 34 chr13 74658865 74659257 -45085641 - L1MCc LINE L1 -4562 1699 1321 1802 175 3 3 chr13 74659257 74659554 -45085344 + AluJo SINE Alu 1 297 -15 1153 303 66 34 chr13 74659554 74660148 -45084750 - L1MCc LINE L1 -4940 1321 467 2252 118 0 3 chr13 74660175 74660479 -45084419 - AluSx SINE Alu -9 303 1 394 314 30 54 chr13 74660939 74661273 -45083625 - L1MCc LINE L1 -5694 376 51 342 42 0 21 chr13 74662002 74662050 -45082848 + (TTTTA)n Simple_repeat Simple_repeat 4 65 0 1271 131 0 0 chr13 74662050 74662225 -45082673 - AluSg/x SINE Alu -30 282 108 1895 160 0 0 chr13 74662360 74662642 -45082256 + AluJb SINE Alu 1 324 0 252 71 24 0 chr13 74662642 74662684 -45082214 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 312 364 16 0 chr13 74663580 74663701 -45081197 - L2 LINE L2 0 3313 3191 1374 138 9 9 chr13 74664927 74665144 -45079754 - AluJb SINE Alu -6 306 90 2057 132 65 8 chr13 74665144 74665499 -45079399 + THE1C LTR MaLR 1 375 0 1996 66 4 0 chr13 74667874 74668131 -45076767 - L1PA8 LINE L1 -7 6165 5908 288 0 0 0 chr13 74668255 74668287 -45076611 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3358 151 29 25 chr13 74669645 74670333 -45074565 + L1MC2 LINE L1 5537 6227 -117 2198 193 23 32 chr13 74670333 74670874 -45074024 - MER41B LTR ERV1 0 594 100 558 109 25 92 chr13 74670874 74670993 -45073905 + L1MC2 LINE L1 6226 6336 -8 318 327 198 0 chr13 74671132 74671294 -45073604 - MIR SINE MIR -32 230 37 4224 71 13 0 chr13 74671400 74671947 -45072951 - MER41A LTR ERV1 0 554 1 1612 194 0 37 chr13 74672809 74673131 -45071767 + AluJo SINE Alu 1 311 0 201 328 9 26 chr13 74673187 74673303 -45071595 + GA-rich Low_complexity Low_complexity 1 114 0 289 325 34 0 chr13 74673512 74673629 -45071269 + MIR3 SINE MIR 68 188 -20 * 352 265 81 29 chr13 74673582 74673718 -45071180 - MIR3 SINE MIR -25 183 41 2220 108 3 0 chr13 74675008 74675303 -45069595 - AluSq SINE Alu -15 298 3 901 144 0 0 chr13 74677844 74677983 -45066915 + FLAM_C SINE Alu 4 142 -1 325 296 20 21 chr13 74678170 74678300 -45066598 + MIR SINE MIR 13 145 -63 1283 241 66 16 chr13 74678312 74678751 -45066147 + L1ME1 LINE L1 5688 6148 -18 529 162 101 10 chr13 74678843 74678942 -45065956 + MER2 DNA MER2_type 1 108 -237 269 89 22 0 chr13 74678982 74679027 -45065871 + (TA)n Simple_repeat Simple_repeat 1 46 0 433 186 0 0 chr13 74679027 74679113 -45065785 + MER2 DNA MER2_type 88 173 -172 3354 158 19 6 chr13 74679206 74679837 -45065061 + L1MA5 LINE L1 5628 6266 -34 599 288 25 6 chr13 74680277 74680440 -45064458 - MER5B DNA MER1_type -12 166 1 183 257 0 0 chr13 74680990 74681025 -45063873 - MIR SINE MIR -144 64 30 2358 92 0 0 chr13 74681190 74681493 -45063405 - AluSc SINE Alu -6 303 1 2094 123 77 6 chr13 74681874 74682224 -45062674 + THE1C LTR MaLR 1 375 0 205 160 240 0 chr13 74682493 74682543 -45062355 - L2 LINE L2 0 3313 3252 186 43 0 0 chr13 74683160 74683183 -45061715 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2238 98 7 3 chr13 74683185 74683482 -45061416 - AluSg SINE Alu -12 298 1 1458 123 5 5 chr13 74683486 74683705 -45061193 - AluSg/x SINE Alu 0 312 94 587 327 142 10 chr13 74684878 74685294 -45059604 - L2 LINE L2 -812 2502 2032 255 303 30 10 chr13 74685293 74685392 -45059506 + L2 LINE L2 2932 3032 -240 * 181 313 150 0 chr13 74685565 74685645 -45059253 + L2 LINE L2 3165 3256 -16 23 33 0 0 chr13 74687136 74687166 -45057732 + AT_rich Low_complexity Low_complexity 1 30 0 3779 74 17 8 chr13 74687211 74687737 -45057161 - L1PA10 LINE L1 -1 6167 5637 373 222 56 37 chr13 74687737 74687845 -45057053 + Charlie2 DNA MER1_type 2161 2270 -592 693 333 58 44 chr13 74688245 74688675 -45056223 + L2 LINE L2 2837 3272 0 200 211 0 0 chr13 74689003 74689041 -45055857 - L2 LINE L2 -1 3312 3275 960 198 6 6 chr13 74690601 74690778 -45054120 + MER45A DNA AcHobo 2 178 0 226 193 35 18 chr13 74690778 74690835 -45054063 + L1MC/D LINE L1 5854 5911 -1897 419 225 108 22 chr13 74690922 74690954 -45053944 + MIR SINE MIR 2 30 -232 1591 165 77 4 chr13 74690954 74691227 -45053671 + AluJo SINE Alu 1 293 -19 419 225 108 22 chr13 74691227 74691391 -45053507 + MIR SINE MIR 30 180 -82 634 193 183 7 chr13 74691552 74691826 -45053072 - MER69 DNA AcHobo -30 2496 2175 2060 147 7 3 chr13 74691827 74692134 -45052764 + AluSx SINE Alu 1 308 -4 315 258 158 0 chr13 74692193 74692329 -45052569 - L1MB7 LINE L1 -6 6160 6011 2307 219 37 86 chr13 74692337 74693278 -45051620 - L1M4 LINE L1 -1712 4434 3540 924 236 23 5 chr13 74694024 74694244 -45050654 - MER58A DNA MER1_type 0 224 1 2032 150 0 71 chr13 74694278 74694514 -45050384 - MLT1A1 LTR MaLR 0 365 167 2172 116 14 0 chr13 74694514 74694807 -45050091 - AluSg SINE Alu -13 297 1 2032 150 0 71 chr13 74694807 74694963 -45049935 - MLT1A1 LTR MaLR -198 167 1 1646 187 43 7 chr13 74695944 74696244 -45048654 - AluJo SINE Alu -1 311 1 794 240 51 0 chr13 74696594 74696769 -45048129 + MER5A DNA MER1_type 6 189 0 196 298 69 46 chr13 74696841 74696972 -45047926 + L2 LINE L2 2127 2260 -1054 1560 197 29 18 chr13 74697116 74697497 -45047401 - MER96B DNA MER1_type? -7 410 26 25 31 0 0 chr13 74699777 74699809 -45045089 + AT_rich Low_complexity Low_complexity 1 32 0 258 267 67 50 chr13 74702489 74702609 -45042289 - L2 LINE L2 -10 3262 3141 2237 104 0 29 chr13 74702790 74703106 -45041792 - AluSg SINE Alu -3 307 1 276 256 51 0 chr13 74703749 74703827 -45041071 - MIR3 SINE MIR -2 206 125 260 207 50 99 chr13 74706743 74706864 -45038034 - MIR SINE MIR -50 212 98 2346 184 23 19 chr13 74706935 74707120 -45037778 + L1MC4a LINE L1 7285 7468 -340 2292 133 67 13 chr13 74707120 74707496 -45037402 - MSTD LTR MaLR 0 396 1 2346 184 23 19 chr13 74707496 74707831 -45037067 + L1MC4a LINE L1 7468 7807 -1 21 0 0 0 chr13 74707832 74707853 -45037045 + AT_rich Low_complexity Low_complexity 1 21 0 327 271 68 17 chr13 74708102 74708220 -45036678 + MIR SINE MIR 107 230 -32 393 39 0 0 chr13 74710539 74710590 -45034308 + (TC)n Simple_repeat Simple_repeat 1 51 0 483 117 0 0 chr13 74710590 74710684 -45034214 + (TCCA)n Simple_repeat Simple_repeat 3 96 0 1711 149 0 48 chr13 74710875 74711190 -45033708 + AluJo SINE Alu 12 311 -1 811 350 170 14 chr13 74711249 74711968 -45032930 + L2 LINE L2 1928 2758 -556 437 312 43 0 chr13 74712615 74712756 -45032142 + MIR3 SINE MIR 41 187 -21 315 157 0 0 chr13 74713543 74713594 -45031304 - L1MC4 LINE L1 -1339 6703 6653 320 263 150 20 chr13 74713723 74714176 -45030722 + L1 LINE L1 2950 3461 -2685 306 292 78 66 chr13 74714206 74714463 -45030435 + L1 LINE L1 3515 3774 -2372 384 235 53 58 chr13 74714474 74714717 -45030181 + L1 LINE L1 3856 4097 -2049 514 326 115 10 chr13 74714729 74715121 -45029777 + L1 LINE L1 4122 4554 -1592 30 0 0 0 chr13 74715219 74715249 -45029649 + AT_rich Low_complexity Low_complexity 1 30 0 224 296 7 53 chr13 74716039 74716191 -45028707 + CT-rich Low_complexity Low_complexity 3 147 0 258 325 0 13 chr13 74716805 74716882 -45028016 + L2 LINE L2 3193 3268 -4 535 229 110 66 chr13 74718004 74718231 -45026667 + MIR SINE MIR 20 256 -6 252 273 0 52 chr13 74718275 74718352 -45026546 - L2 LINE L2 0 3313 3241 2127 179 46 36 chr13 74719098 74719594 -45025304 + MLT1D LTR MaLR 1 501 -4 246 333 40 0 chr13 74719971 74720046 -45024852 + L2 LINE L2 3143 3220 -52 261 0 0 0 chr13 74720557 74720586 -45024312 + (T)n Simple_repeat Simple_repeat 1 29 0 407 210 10 0 chr13 74721315 74721415 -45023483 + L1MB2 LINE L1 5948 6048 -123 2464 103 22 66 chr13 74721435 74721889 -45023009 - Tigger2 DNA MER2_type -1 2717 2284 2272 111 0 7 chr13 74721891 74722197 -45022701 - AluY SINE Alu -7 304 1 432 162 0 0 chr13 74722211 74722279 -45022619 - Tigger2 DNA MER2_type -2649 69 2 509 81 93 12 chr13 74722286 74722372 -45022526 + L1MB2 LINE L1 6072 6164 -7 243 304 54 0 chr13 74722704 74722816 -45022082 - MIR SINE MIR -12 250 133 509 248 30 17 chr13 74722920 74723099 -45021799 - MIR SINE MIR -26 182 3 185 395 33 58 chr13 74723212 74723363 -45021535 - L2 LINE L2 -337 2977 2824 2293 91 0 3 chr13 74723363 74723660 -45021238 + AluSc SINE Alu 1 296 -13 185 395 33 58 chr13 74723660 74723837 -45021061 - L2 LINE L2 -490 2824 2657 24 0 0 0 chr13 74724028 74724052 -45020846 + AT_rich Low_complexity Low_complexity 1 24 0 2267 80 10 0 chr13 74724468 74724757 -45020141 - AluSx SINE Alu -20 292 1 424 243 14 7 chr13 74725300 74725440 -45019458 - MER103 DNA DNA 0 166 26 730 290 89 0 chr13 74725594 74725818 -45019080 + MIR SINE MIR 19 262 0 265 344 42 0 chr13 74726034 74726130 -45018768 + L2 LINE L2 2659 2758 -556 183 364 0 20 chr13 74726279 74726378 -45018520 + L2 LINE L2 2945 3041 -231 248 312 56 32 chr13 74726498 74726623 -45018275 + L2 LINE L2 3182 3309 -4 6925 71 5 44 chr13 74726865 74728183 -45016715 + SVA Other Other 393 1386 0 192 288 164 48 chr13 74729064 74729210 -45015688 - MIR SINE MIR -34 228 66 362 288 63 0 chr13 74729984 74730095 -45014803 + L2 LINE L2 3184 3301 -12 591 294 115 15 chr13 74730596 74730865 -45014033 + MLT1J1 LTR MaLR 20 315 -131 226 257 28 73 chr13 74730916 74731025 -45013873 + MLT1F LTR MaLR 59 162 -433 377 306 140 21 chr13 74731115 74731350 -45013548 + MLT1F LTR MaLR 280 542 0 456 72 159 0 chr13 74732424 74732493 -45012405 + MADE1 DNA Mariner 1 80 0 315 0 0 0 chr13 74732759 74732794 -45012104 + (CA)n Simple_repeat Simple_repeat 2 36 0 2237 108 0 0 chr13 74733604 74733899 -45010999 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr13 74735842 74735864 -45009034 + AT_rich Low_complexity Low_complexity 1 22 0 507 340 207 17 chr13 74735919 74736292 -45008606 - L2 LINE L2 -86 3227 2786 1992 248 80 13 chr13 74736295 74736848 -45008050 - MLT1G1 LTR MaLR -5 590 1 1325 237 46 0 chr13 74736848 74737173 -45007725 - L2 LINE L2 -521 2793 2454 374 238 110 61 chr13 74738149 74738313 -45006585 + L1MDb LINE L1 1124 1295 -5114 258 32 0 0 chr13 74738321 74738352 -45006546 + (GA)n Simple_repeat Simple_repeat 2 32 0 427 249 49 81 chr13 74738431 74738629 -45006269 + L1MDb LINE L1 1463 1643 -4944 2263 103 0 10 chr13 74738629 74738929 -45005969 + AluSx SINE Alu 1 297 -15 427 249 49 81 chr13 74738929 74739140 -45005758 + L1MDb LINE L1 1643 1859 -4728 239 292 80 7 chr13 74739928 74740065 -45004833 - L1ME LINE L1 -340 5781 5635 4603 149 7 2 chr13 74740123 74740944 -45003954 + L1PB4 LINE L1 5329 6153 -3 410 348 75 21 chr13 74740980 74741167 -45003731 - L1ME LINE L1 -555 5566 5370 2370 73 3 3 chr13 74741268 74741571 -45003327 + AluY SINE Alu 2 304 -7 297 312 90 29 chr13 74741596 74742074 -45002824 - L1ME LINE L1 -1836 4310 3804 532 299 143 23 chr13 74742408 74742836 -45002062 - L1ME LINE L1 -2701 3445 2967 335 274 300 11 chr13 74743421 74743611 -45001287 - MIR SINE MIR 0 262 18 2162 106 9 44 chr13 74743614 74743935 -45000963 - AluSx SINE Alu -2 310 1 236 136 0 0 chr13 74744676 74744720 -45000178 - L1M1 LINE L1 -502 5800 5757 900 115 209 0 chr13 74744721 74744903 -44999995 + L1MA2 LINE L1 6005 6224 -80 1477 97 22 9 chr13 74744903 74745131 -44999767 + L1MA2 LINE L1 6069 6299 -5 2435 82 0 13 chr13 74745884 74746199 -44998699 - AluY SINE Alu 0 311 1 187 376 77 47 chr13 74746537 74746707 -44998191 + L2 LINE L2 3092 3266 -6 424 300 157 31 chr13 74746796 74747019 -44997879 - MIR SINE MIR -10 252 2 1782 167 0 26 chr13 74747066 74747378 -44997520 + AluJb SINE Alu 1 304 -8 23 54 0 0 chr13 74747846 74747883 -44997015 + AT_rich Low_complexity Low_complexity 1 37 0 694 212 0 0 chr13 74747887 74748019 -44996879 + FLAM_C SINE Alu 1 132 -11 223 273 121 76 chr13 74748141 74748273 -44996625 - MIR SINE MIR -57 205 68 181 392 39 39 chr13 74748718 74748848 -44996050 + L3 LINE CR1 133 262 -1315 2086 181 24 3 chr13 74748927 74749309 -44995589 - MLT1B LTR MaLR 0 390 1 3226 171 32 10 chr13 74749968 74750557 -44994341 + MER7C DNA MER2_type 1 602 0 490 374 134 28 chr13 74750601 74751670 -44993228 + L2 LINE L2 1794 2975 -339 2008 98 0 4 chr13 74751982 74752246 -44992652 - AluSp SINE Alu -15 298 36 1812 156 0 0 chr13 74752256 74752531 -44992367 - AluSx SINE Alu -10 302 28 603 245 122 0 chr13 74753236 74753424 -44991474 + MER58C DNA MER1_type 5 215 0 363 340 16 17 chr13 74753626 74753830 -44991068 + MIR SINE MIR 17 220 -42 406 266 16 23 chr13 74754364 74754492 -44990406 + MLT1J1 LTR MaLR 36 162 -284 1476 199 17 0 chr13 74754574 74754876 -44990022 + L1P LINE L1 4766 5072 -1074 26 50 0 0 chr13 74755000 74755040 -44989858 + AT_rich Low_complexity Low_complexity 1 40 0 1281 186 82 37 chr13 74755105 74755433 -44989465 + MER2 DNA MER2_type 3 345 0 647 208 49 33 chr13 74755433 74755591 -44989307 + MLT1C LTR MaLR 74 234 -233 638 280 19 14 chr13 74755789 74756000 -44988898 + MLT1C LTR MaLR 253 464 -3 1329 208 63 23 chr13 74756118 74756469 -44988429 - MLT1A1 LTR MaLR 0 365 1 352 258 48 91 chr13 74757095 74757281 -44987617 - MER5A DNA MER1_type -5 184 7 328 232 10 30 chr13 74757346 74757445 -44987453 - MER5A DNA MER1_type -80 109 13 * 479 270 15 7 chr13 74757444 74757581 -44987317 + MER5B DNA MER1_type 33 170 -8 2093 119 3 3 chr13 74758900 74759194 -44985704 - AluSx SINE Alu -14 298 5 643 208 27 0 chr13 74759834 74759983 -44984915 - MER103 DNA DNA -4 162 10 252 324 28 76 chr13 74760179 74760324 -44984574 - MIR3 SINE MIR -46 162 25 189 0 0 0 chr13 74760979 74761000 -44983898 + (A)n Simple_repeat Simple_repeat 1 21 0 2031 132 0 10 chr13 74761495 74761791 -44983107 - AluSx SINE Alu 0 312 20 306 291 25 0 chr13 74761797 74761876 -44983022 - L2 LINE L2 -5 3267 3187 707 281 94 13 chr13 74762103 74762338 -44982560 - MIR SINE MIR -3 259 6 353 206 0 0 chr13 74764080 74764148 -44980750 + L1ME2 LINE L1 6087 6154 -10 23 0 0 0 chr13 74764219 74764242 -44980656 + AT_rich Low_complexity Low_complexity 1 23 0 2139 232 52 47 chr13 74764305 74764536 -44980362 - L1MC2 LINE L1 -298 6046 5818 3270 92 7 20 chr13 74764536 74764980 -44979918 - L1PA13 LINE L1 -19 6144 5707 2139 232 52 47 chr13 74764980 74765402 -44979496 - L1MC2 LINE L1 -526 5818 5391 1438 246 62 10 chr13 74765406 74765792 -44979106 - LTR40b LTR ERVL -4 458 53 2412 69 10 3 chr13 74765823 74766129 -44978769 - AluY SINE Alu -3 308 1 55 24 0 24 chr13 74766396 74766438 -44978460 + AT_rich Low_complexity Low_complexity 1 42 -40 1961 153 6 6 chr13 74766438 74766751 -44978147 - AluSq SINE Alu 0 313 1 55 24 0 24 chr13 74766751 74766792 -44978106 + AT_rich Low_complexity Low_complexity 42 82 0 237 323 75 30 chr13 74767299 74767432 -44977466 - MIR SINE MIR -76 186 48 2160 128 0 3 chr13 74767458 74767771 -44977127 - AluSx SINE Alu 0 312 1 412 350 103 9 chr13 74768322 74768545 -44976353 - MIR SINE MIR -18 244 1 663 313 44 0 chr13 74769679 74769906 -44974992 - MIR SINE MIR 0 262 26 2289 103 7 0 chr13 74771650 74771952 -44972946 - AluSp SINE Alu -9 304 1 23 78 0 0 chr13 74772281 74772332 -44972566 + AT_rich Low_complexity Low_complexity 1 51 0 458 263 19 39 chr13 74772802 74772958 -44971940 - MIR SINE MIR -2 260 108 1959 167 35 67 chr13 74773674 74774075 -44970823 - MLT1B LTR MaLR -2 388 1 575 319 63 33 chr13 74774640 74775164 -44969734 - L1ME LINE L1 -431 5739 5202 225 0 0 0 chr13 74777958 74777983 -44966915 + (T)n Simple_repeat Simple_repeat 1 25 0 2415 51 3 35 chr13 74778526 74778837 -44966061 + AluY SINE Alu 2 302 -9 343 284 47 39 chr13 74779383 74779510 -44965388 - L2 LINE L2 -2 3311 3184 2665 149 83 58 chr13 74779837 74780058 -44964840 - MER1A DNA MER1_type -2173 529 315 16484 41 4 0 chr13 74780058 74782712 -44962186 - L1PA5 LINE L1 -5 6149 3487 2665 149 83 58 chr13 74782712 74782947 -44961951 - MER1A DNA MER1_type -2387 315 56 1683 136 6 96 chr13 74782947 74783271 -44961627 - AluJb SINE Alu -17 295 1 2665 149 83 58 chr13 74783271 74783328 -44961570 - MER1A DNA MER1_type -2646 56 2 1851 255 105 37 chr13 74783328 74783897 -44961001 + MLT1E2 LTR MaLR 19 626 0 206 343 168 8 chr13 74783910 74784178 -44960720 + L2 LINE L2 2447 2757 -557 568 357 80 13 chr13 74784316 74784627 -44960271 + MER115 DNA AcHobo 1 332 -361 1183 250 11 21 chr13 74784655 74784686 -44960212 + MER115 DNA AcHobo 409 439 -254 1435 199 107 24 chr13 74784686 74785023 -44959875 - MLT1A1 LTR MaLR 0 365 1 1183 250 11 21 chr13 74785023 74785271 -44959627 + MER115 DNA AcHobo 439 685 -8 375 286 23 29 chr13 74785273 74785444 -44959454 + L2 LINE L2 2895 3064 -208 696 241 41 15 chr13 74785733 74785928 -44958970 - MIR SINE MIR 0 262 63 21 0 0 0 chr13 74786001 74786022 -44958876 + AT_rich Low_complexity Low_complexity 1 21 0 4236 152 11 37 chr13 74787547 74788277 -44956621 + MER50 LTR ERV1 1 711 -23 225 284 45 0 chr13 74788278 74788345 -44956553 + MIR3 SINE MIR 89 158 -50 198 0 0 0 chr13 74788357 74788379 -44956519 + (T)n Simple_repeat Simple_repeat 1 22 0 186 362 0 0 chr13 74789306 74789364 -44955534 + L3 LINE CR1 1519 1576 -1 * 289 222 67 33 chr13 74789347 74789437 -44955461 + MIR SINE MIR 97 189 -73 593 273 13 13 chr13 74789472 74789622 -44955276 + L2 LINE L2 3117 3266 -6 634 237 21 52 chr13 74789777 74789845 -44955053 + MER5A DNA MER1_type 2 71 -118 1856 173 0 7 chr13 74789845 74790151 -44954747 + AluJb SINE Alu 1 304 -8 634 237 21 52 chr13 74790151 74790276 -44954622 + MER5A DNA MER1_type 71 189 0 223 318 207 14 chr13 74790392 74790609 -44954289 - MIR SINE MIR 0 262 4 466 332 52 0 chr13 74791517 74791710 -44953188 - MIR SINE MIR -6 256 54 2129 118 33 13 chr13 74792072 74792378 -44952520 + AluSx SINE Alu 1 312 0 424 121 91 0 chr13 74792418 74792484 -44952414 + MSTB1 LTR MaLR 1 72 -360 43481 33 22 3 chr13 74792484 74798508 -44946390 + L1PA2 LINE L1 13 6155 0 2318 144 42 13 chr13 74798512 74798893 -44946005 + MSTB1 LTR MaLR 41 432 0 1963 148 7 0 chr13 74799364 74799669 -44945229 + L1MB7 LINE L1 5862 6168 -16 22 0 0 0 chr13 74799674 74799696 -44945202 + AT_rich Low_complexity Low_complexity 1 22 0 2173 135 0 0 chr13 74799708 74800004 -44944894 + AluSx SINE Alu 4 299 -13 535 293 36 62 chr13 74801282 74801347 -44943551 + L2 LINE L2 1924 1989 -1325 2230 123 0 3 chr13 74801347 74801655 -44943243 - AluSx SINE Alu -5 307 1 535 293 36 62 chr13 74801655 74801896 -44943002 + L2 LINE L2 1989 2222 -1092 500 241 67 133 chr13 74801878 74802001 -44942897 + L2 LINE L2 3019 3149 -164 * 3475 113 30 0 chr13 74802001 74802505 -44942393 - L1MA2 LINE L1 -1 6303 5785 500 241 67 133 chr13 74802505 74802581 -44942317 + L2 LINE L2 3149 3228 -85 315 0 0 0 chr13 74802581 74802616 -44942282 + (TG)n Simple_repeat Simple_repeat 2 36 0 500 241 67 133 chr13 74802616 74802731 -44942167 + L2 LINE L2 3228 3313 0 1459 166 28 35 chr13 74803256 74803539 -44941359 + AluJo SINE Alu 21 301 -11 2960 130 17 5 chr13 74803630 74804052 -44940846 - MSTA LTR MaLR -1 427 1 208 346 177 0 chr13 74804150 74804280 -44940618 - L2 LINE L2 -4 3268 3116 204 40 0 0 chr13 74804292 74804317 -44940581 + (TA)n Simple_repeat Simple_repeat 1 25 0 483 18 0 0 chr13 74804318 74804374 -44940524 + (TG)n Simple_repeat Simple_repeat 1 56 0 1616 163 82 0 chr13 74805491 74805761 -44939137 + AluJo SINE Alu 17 308 -4 201 318 23 0 chr13 74806044 74806132 -44938766 + L2 LINE L2 2231 2320 -994 288 0 0 0 chr13 74806497 74806529 -44938369 + (A)n Simple_repeat Simple_repeat 1 32 0 213 328 15 0 chr13 74806945 74807012 -44937886 + L2 LINE L2 3232 3299 -14 2101 109 20 0 chr13 74807628 74807930 -44936968 + AluSp SINE Alu 1 308 -5 330 317 116 31 chr13 74808023 74808247 -44936651 - MIR SINE MIR 0 262 20 253 202 11 34 chr13 74808361 74808450 -44936448 + (CTATA)n Simple_repeat Simple_repeat 4 90 0 593 304 0 0 chr13 74808688 74808846 -44936052 + MIR SINE MIR 18 175 -87 2395 179 49 5 chr13 74809059 74809467 -44935431 - MSTB LTR MaLR 0 426 1 234 0 0 0 chr13 74810078 74810104 -44934794 + (A)n Simple_repeat Simple_repeat 1 26 0 667 248 149 46 chr13 74810104 74810560 -44934338 + MLT1H LTR MaLR 18 520 -29 671 184 105 22 chr13 74810836 74811064 -44933834 - MLT1A2 LTR MaLR 0 374 38 1678 171 4 4 chr13 74811064 74811339 -44933559 - AluJb SINE Alu -37 275 1 671 184 105 22 chr13 74811339 74811381 -44933517 - MLT1A2 LTR MaLR -336 38 1 356 257 160 51 chr13 74811387 74811562 -44933336 - MIR SINE MIR -49 213 20 359 247 49 0 chr13 74812178 74812259 -44932639 + L2 LINE L2 3224 3308 -5 200 256 0 0 chr13 74812486 74812525 -44932373 + polypurine Low_complexity Low_complexity 4 42 0 2255 81 16 3 chr13 74815026 74815333 -44929565 - AluSx SINE Alu -1 311 1 1781 207 151 10 chr13 74816055 74816598 -44928300 - MLT1E1 LTR MaLR -2 652 1 295 301 163 32 chr13 74818444 74818567 -44926331 + MER5B DNA MER1_type 49 176 -2 378 308 56 21 chr13 74818569 74818942 -44925956 - L1ME LINE L1 -508 5656 5271 230 283 105 50 chr13 74819127 74819650 -44925248 - L1ME LINE L1 -1489 4657 4106 1523 223 88 5 chr13 74819660 74820059 -44924839 + LTR16A LTR ERVL 7 438 -12 212 283 0 19 chr13 74820168 74820221 -44924677 + L2 LINE L2 3194 3245 -68 881 232 30 0 chr13 74820709 74820907 -44923991 + MER63A DNA MER1_type 7 210 0 23 54 0 0 chr13 74820940 74820977 -44923921 + AT_rich Low_complexity Low_complexity 1 37 0 489 316 179 46 chr13 74821204 74821938 -44922960 + L2 LINE L2 1990 2820 -494 587 232 181 0 chr13 74822439 74822594 -44922304 + MER5A DNA MER1_type 6 188 -1 888 183 33 7 chr13 74822603 74822756 -44922142 + MER5A DNA MER1_type 5 161 -28 633 271 41 12 chr13 74822849 74823019 -44921879 - MER5B DNA MER1_type -3 175 1 272 304 11 33 chr13 74823345 74823437 -44921461 + L2 LINE L2 3224 3313 0 554 235 17 0 chr13 74823514 74823629 -44921269 + FLAM_A SINE Alu 1 117 -16 470 321 89 13 chr13 74823865 74824089 -44920809 + MIR SINE MIR 5 245 -17 1367 151 50 0 chr13 74825005 74825264 -44919634 - L1 LINE L1 -1453 4693 4422 353 325 0 16 chr13 74825454 74825580 -44919318 - MIR SINE MIR -92 170 47 2208 113 3 7 chr13 74825671 74825981 -44918917 - AluSp SINE Alu -4 309 1 447 292 65 22 chr13 74826066 74826251 -44918647 + MIR SINE MIR 70 262 0 25 31 0 0 chr13 74830098 74830130 -44914768 + AT_rich Low_complexity Low_complexity 1 32 0 1778 180 0 14 chr13 74830288 74830583 -44914315 - AluJo SINE Alu -21 291 1 332 340 151 70 chr13 74830681 74831066 -44913832 - L2 LINE L2 0 3272 2857 476 281 0 0 chr13 74831197 74831325 -44913573 - MER20 DNA MER1_type -3 216 89 22 0 0 0 chr13 74831837 74831859 -44913039 + AT_rich Low_complexity Low_complexity 1 22 0 463 183 157 9 chr13 74831923 74832038 -44912860 - FLAM_C SINE Alu -1 132 1 1839 183 10 0 chr13 74832038 74832339 -44912559 - AluJo SINE Alu -8 304 1 630 268 33 24 chr13 74832483 74832696 -44912202 + L1MC4 LINE L1 7369 7583 -459 258 209 143 38 chr13 74833384 74833489 -44911409 + MLT1K LTR MaLR 455 570 -18 1924 172 42 42 chr13 74833706 74834114 -44910784 - MLT2D LTR ERVL -2 412 5 242 278 0 0 chr13 74834299 74834353 -44910545 + (CATTC)n Simple_repeat Simple_repeat 3 56 0 242 247 24 12 chr13 74834353 74834438 -44910460 + MER112 DNA MER1_type 163 248 -12 227 266 133 3 chr13 74837290 74837461 -44907437 + MIR SINE MIR 12 256 -6 23 33 0 0 chr13 74837833 74837863 -44907035 + AT_rich Low_complexity Low_complexity 1 30 0 284 333 141 30 chr13 74840803 74841037 -44903861 + MIR SINE MIR 2 261 -1 265 250 87 22 chr13 74848635 74848727 -44896171 - MIR SINE MIR -79 183 86 297 51 0 0 chr13 74849044 74849083 -44895815 + (CA)n Simple_repeat Simple_repeat 2 40 0 1649 179 29 29 chr13 74849828 74850135 -44894763 + AluJo SINE Alu 1 307 -5 200 111 28 0 chr13 74850145 74850181 -44894717 + G-rich Low_complexity Low_complexity 1 37 0 920 233 69 0 chr13 74850523 74850768 -44894130 + MER58B DNA MER1_type 80 341 0 1184 204 6 89 chr13 74851036 74851360 -44893538 + AluJo SINE Alu 3 299 -3 24 32 0 0 chr13 74851360 74851391 -44893507 + AT_rich Low_complexity Low_complexity 1 31 0 1730 179 10 13 chr13 74851941 74852242 -44892656 + AluSx SINE Alu 1 300 -12 40 21 0 0 chr13 74852242 74852289 -44892609 + AT_rich Low_complexity Low_complexity 1 47 0 237 274 195 9 chr13 74855070 74855183 -44889715 + MIR SINE MIR 115 248 -14 24 53 0 0 chr13 74855219 74855257 -44889641 + AT_rich Low_complexity Low_complexity 1 38 0 316 327 0 0 chr13 74855594 74855701 -44889197 - MIR SINE MIR -21 241 135 513 334 120 42 chr13 74856012 74856655 -44888243 + L2 LINE L2 2043 2735 -579 204 243 162 0 chr13 74856755 74856829 -44888069 + L2 LINE L2 3218 3303 -10 1994 148 3 0 chr13 74857228 74857526 -44887372 - AluSx SINE Alu -9 303 5 2247 85 0 11 chr13 74857829 74858139 -44886759 + AluSc SINE Alu 1 307 0 243 330 73 18 chr13 74859274 74859383 -44885515 - MIR SINE MIR -78 130 16 397 329 201 24 chr13 74861659 74861987 -44882911 + L3 LINE CR1 417 802 -775 305 224 40 0 chr13 74862056 74862132 -44882766 - L3 LINE CR1 -106 1471 1393 13764 129 44 10 chr13 74862282 74862332 -44882566 + Tigger1 DNA MER2_type 1 48 -2370 372 22 0 0 chr13 74862332 74862377 -44882521 + (TG)n Simple_repeat Simple_repeat 2 46 0 13764 129 44 10 chr13 74862377 74864014 -44880884 + Tigger1 DNA MER2_type 48 1791 -627 2447 76 3 0 chr13 74864014 74864317 -44880581 + AluSp SINE Alu 1 304 -9 13764 129 44 10 chr13 74864317 74864967 -44879931 + Tigger1 DNA MER2_type 1791 2418 0 231 299 52 13 chr13 74865474 74865551 -44879347 + L3 LINE CR1 1497 1576 -1 833 143 0 0 chr13 74866117 74866236 -44878662 + FLAM_C SINE Alu 1 119 -14 324 296 26 72 chr13 74868634 74868786 -44876112 - L1ME3A LINE L1 -223 5947 5803 555 216 31 19 chr13 74868794 74868956 -44875942 + MER104 DNA Tc2 8 171 -9 826 229 0 27 chr13 74868956 74869144 -44875754 - MER58A DNA MER1_type 0 224 42 752 191 0 0 chr13 74869145 74869276 -44875622 + FLAM_C SINE Alu 1 131 -12 801 147 7 15 chr13 74870431 74870567 -44874331 + AluJb SINE Alu 1 135 -177 1951 142 3 3 chr13 74870567 74870856 -44874042 + AluJb SINE Alu 1 289 -23 21 0 0 0 chr13 74870914 74870935 -44873963 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 74871439 74871469 -44873429 + AT_rich Low_complexity Low_complexity 1 30 0 1761 168 17 10 chr13 74871563 74871854 -44873044 - AluJo SINE Alu -19 293 1 617 274 129 54 chr13 74872998 74873239 -44871659 - MIR SINE MIR -1 261 3 1547 210 10 19 chr13 74873492 74873802 -44871096 - AluJo SINE Alu 0 312 6 4540 52 18 2 chr13 74875724 74876341 -44868557 + L1PA8 LINE L1 5362 5988 -184 352 292 18 35 chr13 74876678 74876791 -44868107 - MIR SINE MIR -65 143 33 2296 94 0 3 chr13 74877057 74877356 -44867542 - AluSc SINE Alu -11 298 1 253 310 69 58 chr13 74877707 74877790 -44867108 + MIR SINE MIR 56 137 -125 1940 93 70 11 chr13 74877790 74878109 -44866789 - AluSp SINE Alu 0 335 1 253 310 69 58 chr13 74878109 74878198 -44866700 + MIR SINE MIR 137 231 -31 4724 202 101 15 chr13 74878253 74879651 -44865247 - L1MB7 LINE L1 -32 6152 4475 2274 99 3 0 chr13 74879651 74879953 -44864945 - AluSx SINE Alu -9 303 1 4724 202 101 15 chr13 74879953 74880892 -44864006 - L1MB7 LINE L1 -1709 4475 3617 21 36 0 0 chr13 74882483 74882511 -44862387 + AT_rich Low_complexity Low_complexity 1 28 0 181 311 0 16 chr13 74882558 74882619 -44862279 - L2 LINE L2 -181 3091 3032 231 346 51 62 chr13 74882907 74883164 -44861734 - L2 LINE L2 -608 2706 2453 2315 95 0 20 chr13 74884040 74884346 -44860552 - AluSq SINE Alu -13 300 1 374 176 22 55 chr13 74884348 74884439 -44860459 - MIR SINE MIR -113 149 62 229 241 37 0 chr13 74884455 74884509 -44860389 + L2 LINE L2 3244 3299 -14 1114 270 126 38 chr13 74884551 74885085 -44859813 + L2 LINE L2 2092 2672 -642 3145 182 34 38 chr13 74885092 74885832 -44859066 - L1MB4 LINE L1 -6 6174 5438 710 269 77 80 chr13 74885843 74886403 -44858495 + L2 LINE L2 2707 3276 -37 612 243 117 33 chr13 74886649 74886893 -44858005 - MIR SINE MIR 0 262 1 1817 163 0 33 chr13 74886962 74887262 -44857636 + AluJo SINE Alu 1 290 -22 194 371 41 57 chr13 74887369 74887563 -44857335 - L2 LINE L2 -167 3105 2915 371 279 51 38 chr13 74887645 74887803 -44857095 - MIR SINE MIR 0 262 103 186 133 0 0 chr13 74887895 74887925 -44856973 + (T)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 74889173 74889194 -44855704 + AT_rich Low_complexity Low_complexity 1 21 0 444 282 68 0 chr13 74889374 74889491 -44855407 + MIR3 SINE MIR 84 208 0 309 326 0 0 chr13 74889997 74890086 -44854812 - L1MC4 LINE L1 -1339 6703 6615 * 317 287 23 0 chr13 74890012 74890099 -44854799 + L1MC4 LINE L1 6615 6703 -1339 2160 95 7 30 chr13 74890112 74890408 -44854490 - AluSx SINE Alu -23 289 1 592 228 54 60 chr13 74890819 74890909 -44853989 + MIR SINE MIR 70 159 -103 2049 137 3 0 chr13 74890909 74891233 -44853665 + AluSx SINE Alu 1 325 0 592 228 54 60 chr13 74891233 74891324 -44853574 + MIR SINE MIR 159 252 -10 292 83 21 21 chr13 74891972 74892020 -44852878 + MLT1A1 LTR MaLR 1 48 -317 1744 172 10 3 chr13 74892091 74892394 -44852504 + MLT1A1 LTR MaLR 61 365 0 731 178 7 22 chr13 74892462 74892597 -44852301 - FLAM_C SINE Alu 0 133 1 313 346 40 0 chr13 74893796 74893897 -44851001 - L2 LINE L2 0 3272 3168 358 304 40 8 chr13 74894403 74894528 -44850370 - MIR SINE MIR 0 262 134 273 0 21 64 chr13 74894534 74894581 -44850317 - THE1-int LTR MaLR 0 1580 1536 353 253 53 0 chr13 74894581 74894676 -44850222 - MIR SINE MIR -62 200 101 192 324 67 38 chr13 74896220 74896325 -44848573 + MIR SINE MIR 78 185 -77 206 224 61 0 chr13 74898539 74898588 -44846310 + L2 LINE L2 3245 3296 -17 192 231 0 0 chr13 74898554 74898593 -44846305 + MIR SINE MIR 216 254 -8 * 2251 115 0 13 chr13 74898767 74899071 -44845827 - AluSx SINE Alu -11 301 2 350 283 10 20 chr13 74899078 74899177 -44845721 - L2 LINE L2 -1 3271 3174 745 294 36 15 chr13 74899562 74899814 -44845084 - MIR SINE MIR 0 262 14 27 0 0 0 chr13 74900227 74900254 -44844644 + AT_rich Low_complexity Low_complexity 1 27 0 1444 191 33 36 chr13 74900291 74900652 -44844246 + MLT1A2 LTR MaLR 2 361 -13 191 388 122 0 chr13 74900686 74900832 -44844066 - MIR3 SINE MIR -89 173 13 237 379 10 39 chr13 74901943 74902046 -44842852 - MIR3 SINE MIR -108 100 1 298 288 144 9 chr13 74902223 74902334 -44842564 + MIR3 SINE MIR 36 161 -47 1068 80 7 13 chr13 74902584 74902735 -44842163 - L1PA10 LINE L1 -2 6166 6017 253 329 94 42 chr13 74902789 74903002 -44841896 - L2 LINE L2 -405 2909 2686 2421 98 20 0 chr13 74903048 74903406 -44841492 - L1P5 LINE L1 -352 5804 5440 1813 163 58 0 chr13 74903944 74904238 -44840660 - AluSx SINE Alu -1 311 1 211 333 0 0 chr13 74904394 74904466 -44840432 + L2 LINE L2 2207 2278 -1036 585 300 173 32 chr13 74904474 74904686 -44840212 + L2 LINE L2 2430 2611 -702 1768 103 28 115 chr13 74904686 74905007 -44839891 - AluSg SINE Alu -17 293 1 585 300 173 32 chr13 74905007 74905564 -44839334 + L2 LINE L2 2611 3304 -9 281 213 66 0 chr13 74906045 74906106 -44838792 + MER91C DNA MER1_type 43 107 -33 2948 87 47 7 chr13 74907579 74908006 -44836892 - L1PB1 LINE L1 0 6151 5708 26 50 0 0 chr13 74908095 74908135 -44836763 + AT_rich Low_complexity Low_complexity 1 40 0 521 184 18 9 chr13 74908994 74909108 -44835790 + L1PB4 LINE L1 6041 6155 -1 731 147 7 52 chr13 74910019 74910155 -44834743 - FLAM_A SINE Alu -3 130 1 24 53 0 0 chr13 74911317 74911355 -44833543 + AT_rich Low_complexity Low_complexity 1 38 0 1530 157 43 50 chr13 74912297 74912578 -44832320 - AluJo SINE Alu -33 279 1 1053 210 57 80 chr13 74913230 74913764 -44831134 + MER34B LTR ERV1 1 564 -1 245 353 129 0 chr13 74915281 74915397 -44829501 + L2 LINE L2 3141 3271 -1 207 289 12 24 chr13 74915825 74915908 -44828990 + MIR SINE MIR 106 187 -75 1042 256 20 8 chr13 74920028 74920274 -44824624 + MIR SINE MIR 13 261 -1 524 300 126 5 chr13 74920623 74920813 -44824085 - MIR SINE MIR -12 250 38 1103 273 171 37 chr13 74921181 74921782 -44823116 + L2 LINE L2 1812 2493 -821 23 33 0 0 chr13 74922127 74922157 -44822741 + AT_rich Low_complexity Low_complexity 1 30 0 2168 111 3 3 chr13 74922481 74922778 -44822120 - AluSx SINE Alu -15 297 1 394 228 90 69 chr13 74923155 74923300 -44821598 + L2 LINE L2 3158 3305 -8 267 340 0 47 chr13 74923305 74923411 -44821487 + L2 LINE L2 3136 3236 -36 338 350 95 79 chr13 74923558 74923875 -44821023 - L2 LINE L2 0 3272 2951 250 207 86 0 chr13 74924151 74924209 -44820689 - L2 LINE L2 0 3313 3251 180 325 167 30 chr13 74924650 74925207 -44819691 - L2 LINE L2 -558 2756 2124 188 382 27 0 chr13 74925387 74925497 -44819401 + L2 LINE L2 2377 2489 -825 355 379 77 29 chr13 74925771 74926111 -44818787 + L2 LINE L2 2916 3271 -1 305 214 0 12 chr13 74926194 74926278 -44818620 + (TA)n Simple_repeat Simple_repeat 1 83 0 768 210 35 0 chr13 74926471 74926671 -44818227 + L1MD3 LINE L1 7775 7981 -14 2300 118 0 0 chr13 74926869 74927173 -44817725 - AluSx SINE Alu -8 304 1 22 0 0 0 chr13 74928066 74928088 -44816810 + AT_rich Low_complexity Low_complexity 1 22 0 2315 101 3 0 chr13 74929382 74929688 -44815210 + AluSp SINE Alu 1 307 -6 2269 103 3 7 chr13 74929807 74930117 -44814781 + AluSq SINE Alu 3 311 -2 1737 129 6 60 chr13 74930302 74930620 -44814278 - AluJb SINE Alu -11 301 1 311 264 140 29 chr13 74930644 74930792 -44814106 - MIR SINE MIR -63 145 23 1881 241 58 72 chr13 74931054 74931772 -44813126 + MER21B LTR ERV1 20 727 -136 4192 120 40 133 chr13 74931796 74932206 -44812692 + Tigger1 DNA MER2_type 1469 1915 -503 1356 127 19 0 chr13 74932206 74932419 -44812479 - L1PB1 LINE L1 -7 6144 5928 2255 69 62 0 chr13 74932427 74932717 -44812181 - AluSp SINE Alu -5 308 1 4192 120 40 133 chr13 74932717 74933342 -44811556 + Tigger1 DNA MER2_type 1922 2416 -2 24 53 0 0 chr13 74933791 74933829 -44811069 + AT_rich Low_complexity Low_complexity 1 38 0 560 279 19 32 chr13 74934046 74934204 -44810694 + MIR SINE MIR 5 160 -102 2660 138 17 10 chr13 74935102 74935582 -44809316 + L1MA4 LINE L1 5814 6296 -4 2363 76 0 20 chr13 74936587 74936891 -44808007 - AluY SINE Alu -13 298 1 1949 156 7 0 chr13 74937074 74937369 -44807529 - AluJb SINE Alu -15 297 1 337 317 123 22 chr13 74937421 74937648 -44807250 + L2 LINE L2 2233 2482 -832 1372 171 3 122 chr13 74938556 74938900 -44805998 + AluSq SINE Alu 1 303 0 397 300 95 48 chr13 74939149 74939359 -44805539 - MIR SINE MIR -13 249 30 182 289 0 53 chr13 74939340 74939416 -44805482 + L2 LINE L2 3240 3311 -2 * 554 305 76 5 chr13 74939450 74939660 -44805238 - MIR SINE MIR -13 249 25 21 36 0 0 chr13 74939741 74939769 -44805129 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 74940593 74940617 -44804281 + AT_rich Low_complexity Low_complexity 1 24 0 2552 50 0 0 chr13 74941629 74941931 -44802967 - AluY SINE Alu -9 302 1 207 279 156 25 chr13 74941950 74942072 -44802826 + MIR SINE MIR 122 259 -3 37 76 0 0 chr13 74942246 74942325 -44802573 + AT_rich Low_complexity Low_complexity 1 79 0 25 51 0 0 chr13 74944255 74944294 -44800604 + AT_rich Low_complexity Low_complexity 1 39 0 550 214 19 4 chr13 74944544 74944693 -44800205 + L1ME3 LINE L1 6007 6160 -6 23 33 0 0 chr13 74945324 74945354 -44799544 + AT_rich Low_complexity Low_complexity 1 30 0 285 320 74 8 chr13 74945939 74946061 -44798837 - MIR3 SINE MIR -22 186 57 2240 114 3 0 chr13 74946134 74946432 -44798466 + AluSx SINE Alu 1 299 -13 185 338 50 38 chr13 74947335 74947415 -44797483 + L2 LINE L2 3191 3271 -1 369 0 0 0 chr13 74948463 74948504 -44796394 + (TG)n Simple_repeat Simple_repeat 2 42 0 1524 196 159 23 chr13 74948598 74949114 -44795784 + L1ME2 LINE L1 5569 6154 -10 182 361 68 23 chr13 74949128 74949261 -44795637 + L2 LINE L2 2200 2338 -976 2081 154 0 0 chr13 74949443 74949749 -44795149 + AluJo SINE Alu 1 306 -6 5669 112 17 2 chr13 74950102 74951369 -44793529 + L1PA14 LINE L1 4868 6149 -12 27 0 0 0 chr13 74951376 74951403 -44793495 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr13 74954399 74954428 -44790470 + AT_rich Low_complexity Low_complexity 1 29 0 2366 105 21 26 chr13 74954428 74954809 -44790089 - L1PA16 LINE L1 -9 6157 5779 858 266 26 89 chr13 74955270 74955653 -44789245 + L2 LINE L2 2919 3277 -36 405 0 0 0 chr13 74955729 74955774 -44789124 + (CA)n Simple_repeat Simple_repeat 1 45 0 324 287 120 9 chr13 74955790 74955898 -44789000 + MER91C DNA MER1_type 9 128 -12 213 299 172 49 chr13 74955923 74956127 -44788771 + L2 LINE L2 2701 2929 -385 208 258 97 0 chr13 74956219 74956281 -44788617 + L2 LINE L2 3153 3220 -52 1349 214 39 0 chr13 74957295 74957552 -44787346 + AluJb SINE Alu 2 268 -44 245 91 0 0 chr13 74957563 74957596 -44787302 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 209 237 0 0 chr13 74959586 74959624 -44785274 + C-rich Low_complexity Low_complexity 1 38 0 1054 119 0 0 chr13 74959634 74959793 -44785105 + (G)n Simple_repeat Simple_repeat 1 159 0 342 198 0 52 chr13 74959837 74959933 -44784965 + G-rich Low_complexity Low_complexity 1 91 0 251 35 0 0 chr13 74959967 74960075 -44784823 + (G)n Simple_repeat Simple_repeat 1 108 0 234 0 0 0 chr13 74960091 74960253 -44784645 + (G)n Simple_repeat Simple_repeat 1 162 0 234 0 0 0 chr13 74960264 74960290 -44784608 + (G)n Simple_repeat Simple_repeat 1 26 0 35 0 0 0 chr13 74960314 74960349 -44784549 + AT_rich Low_complexity Low_complexity 1 35 0 41 182 0 0 chr13 74962590 74962678 -44782220 + GC_rich Low_complexity Low_complexity 1 88 0 1178 41 0 0 chr13 74962724 74962869 -44782029 + (G)n Simple_repeat Simple_repeat 1 145 0 204 40 0 0 chr13 74962917 74962942 -44781956 + (G)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 74962945 74962966 -44781932 + AT_rich Low_complexity Low_complexity 1 21 0 248 216 0 0 chr13 74962966 74963017 -44781881 + G-rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr13 74963018 74963043 -44781855 + AT_rich Low_complexity Low_complexity 1 25 0 186 233 0 0 chr13 74963043 74963086 -44781812 + G-rich Low_complexity Low_complexity 1 43 0 550 53 0 13 chr13 74963186 74963262 -44781636 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 1778 171 20 0 chr13 74963354 74963647 -44781251 - AluSx SINE Alu -13 299 1 2140 104 40 0 chr13 74963649 74963948 -44780950 - AluSq SINE Alu -2 311 1 732 189 16 0 chr13 74963948 74964075 -44780823 - FLAM_A SINE Alu -4 129 1 240 122 0 0 chr13 74964185 74964226 -44780672 + (A)n Simple_repeat Simple_repeat 1 41 0 220 274 118 29 chr13 74964230 74964332 -44780566 + MIR SINE MIR 84 194 -68 2273 101 0 7 chr13 74964572 74964870 -44780028 + AluSq SINE Alu 1 296 -17 36 23 0 0 chr13 74967056 74967099 -44777799 + AT_rich Low_complexity Low_complexity 1 43 0 24 85 0 0 chr13 74967138 74967197 -44777701 + AT_rich Low_complexity Low_complexity 1 59 0 2135 117 3 0 chr13 74967511 74967802 -44777096 + AluSx SINE Alu 1 292 -20 231 36 0 0 chr13 74967981 74968009 -44776889 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 693 87 0 0 chr13 74968023 74968115 -44776783 - AluY SINE Alu -226 92 1 2154 108 14 0 chr13 74968526 74968814 -44776084 - AluSg SINE Alu -1 309 18 281 250 103 0 chr13 74968891 74968996 -44775902 + MIR SINE MIR 43 152 -63 187 154 19 19 chr13 74969036 74969088 -44775810 + (CTA)n Simple_repeat Simple_repeat 1 52 0 329 303 119 32 chr13 74969089 74969307 -44775591 - MIR SINE MIR 0 262 26 1859 179 42 10 chr13 74969679 74970082 -44774816 + L1MA9 LINE L1 5897 6312 0 254 206 32 0 chr13 74971922 74971985 -44772913 + MER116 DNA Mariner 8 72 -8 982 195 4 58 chr13 74972222 74972448 -44772450 + MER20 DNA MER1_type 2 215 -4 292 260 40 73 chr13 74972858 74973008 -44771890 - LTR67 LTR ERVL -2 555 411 433 267 117 61 chr13 74974220 74974580 -44770318 + MLT1H LTR MaLR 119 498 -51 1989 152 0 13 chr13 74974580 74974896 -44770002 + AluJo SINE Alu 1 312 0 229 235 0 0 chr13 74974927 74974978 -44769920 + MLT1H LTR MaLR 529 579 -11 1534 248 33 8 chr13 74975082 74975473 -44769425 + MER57A LTR ERV1 3 403 0 1070 150 6 0 chr13 74975689 74975856 -44769042 - AluSg/x SINE Alu -8 304 137 321 281 203 16 chr13 74976670 74976862 -44768036 + MIR SINE MIR 16 243 -19 960 272 48 64 chr13 74977063 74977712 -44767186 - L2 LINE L2 0 3313 2668 575 219 187 16 chr13 74978452 74978639 -44766259 + MER58A DNA MER1_type 1 219 -5 237 242 134 101 chr13 74978650 74978956 -44765942 + L2 LINE L2 2033 2348 -966 737 188 0 8 chr13 74979995 74980123 -44764775 + FLAM_C SINE Alu 1 127 -16 2114 113 10 7 chr13 74981264 74981557 -44763341 - AluSq SINE Alu -19 294 1 2273 102 0 3 chr13 74982333 74982628 -44762270 + AluSq SINE Alu 1 294 -19 2403 61 0 3 chr13 74983525 74983820 -44761078 - AluY SINE Alu -17 294 1 367 253 30 84 chr13 74984264 74984311 -44760587 - L1ME1 LINE L1 -215 5951 5903 207 0 0 0 chr13 74984311 74984334 -44760564 + (CA)n Simple_repeat Simple_repeat 2 24 0 1867 167 3 0 chr13 74984340 74984628 -44760270 - AluJb SINE Alu -23 289 1 367 253 30 84 chr13 74984628 74984739 -44760159 - L1ME1 LINE L1 -268 5898 5795 283 266 47 21 chr13 74984841 74984962 -44759936 - L1ME1 LINE L1 -526 5595 5485 2004 137 13 13 chr13 74985101 74985408 -44759490 - AluSx SINE Alu -3 309 3 320 296 192 33 chr13 74985604 74985844 -44759054 - HAL1 LINE L1 -857 1650 1373 189 309 315 6 chr13 74986009 74986174 -44758724 + L2 LINE L2 2428 2643 -671 218 246 0 31 chr13 74987056 74987121 -44757777 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 306 0 0 0 chr13 74988539 74988573 -44756325 + (CA)n Simple_repeat Simple_repeat 2 35 0 413 252 168 18 chr13 74988715 74988941 -44755957 + MIR SINE MIR 3 262 0 22 35 0 0 chr13 74988941 74988970 -44755928 + AT_rich Low_complexity Low_complexity 1 29 0 342 314 102 0 chr13 74991518 74991636 -44753262 - L2 LINE L2 0 3313 3184 2248 103 0 3 chr13 74992001 74992303 -44752595 - AluSq SINE Alu -12 301 1 1719 161 151 6 chr13 74992493 74992817 -44752081 - MSTA LTR MaLR -57 371 1 7528 196 27 12 chr13 74992817 74994268 -44750630 - MSTA-int LTR MaLR 0 1651 180 608 176 163 0 chr13 74994368 74994521 -44750377 - MSTA LTR MaLR -250 178 1 548 189 0 94 chr13 74994523 74994650 -44750248 - L1PA16 LINE L1 -58 6108 5994 388 311 121 32 chr13 74994951 74995199 -44749699 - MLT1I LTR MaLR -138 271 2 3536 153 37 98 chr13 74996443 74996974 -44747924 - L1PB4 LINE L1 -7 6149 5611 529 95 0 0 chr13 74996974 74997048 -44747850 + MADE1 DNA Mariner 7 80 0 3536 153 37 98 chr13 74997048 74997298 -44747600 - L1PB4 LINE L1 -545 5611 5347 775 220 65 0 chr13 74997301 74997501 -44747397 - L1MA8 LINE L1 -17 6274 6062 500 269 44 47 chr13 74998357 74998654 -44746244 - L1MDa LINE L1 -4950 1590 1295 255 279 148 25 chr13 74999304 74999426 -44745472 + ERVL LTR ERVL 2644 2780 -2984 480 204 29 0 chr13 74999461 74999564 -44745334 + MER5A DNA MER1_type 7 112 -77 616 133 0 0 chr13 74999757 74999855 -44745043 + L1PB4 LINE L1 6053 6150 -6 257 338 123 13 chr13 74999876 75000030 -44744868 + ERVL LTR ERVL 3682 3852 -1912 482 298 91 0 chr13 75000058 75000256 -44744642 + ERVL LTR ERVL 3865 4080 -1574 1682 134 57 51 chr13 75000396 75000731 -44744167 + THE1B LTR MaLR 28 364 0 2265 258 24 20 chr13 75000805 75002055 -44742843 - L1MC/D LINE L1 -743 5403 4568 26 0 0 0 chr13 75004657 75004683 -44740215 + AT_rich Low_complexity Low_complexity 1 26 0 1682 281 79 41 chr13 75004982 75005792 -44739106 - MER110-int LTR ERV1 -1434 3213 2373 1091 193 89 55 chr13 75005906 75006232 -44738666 + MER2 DNA MER2_type 9 345 0 342 312 67 70 chr13 75006502 75006663 -44738235 - MER110-int LTR ERV1 -2707 1940 1779 1754 155 58 22 chr13 75006663 75007025 -44737873 - THE1C LTR MaLR 0 375 1 342 312 67 70 chr13 75007025 75007161 -44737737 - MER110-int LTR ERV1 -2868 1779 1644 2382 86 0 3 chr13 75007163 75007466 -44737432 - AluSx SINE Alu 0 312 11 428 35 17 0 chr13 75008075 75008133 -44736765 + (TC)n Simple_repeat Simple_repeat 2 60 0 * 433 168 26 26 chr13 75008132 75008287 -44736611 + (TA)n Simple_repeat Simple_repeat 2 156 0 2072 200 54 7 chr13 75008389 75008794 -44736104 - MSTB LTR MaLR 0 426 3 7072 195 65 33 chr13 75008800 75010396 -44734502 - MSTB-int LTR MaLR -4 1647 1 834 211 12 6 chr13 75010396 75010562 -44734336 - MSTB LTR MaLR 0 426 260 3405 204 41 64 chr13 75011230 75012202 -44732696 - L1MC3 LINE L1 -964 6821 5872 2022 134 50 34 chr13 75012202 75012560 -44732338 + THE1B LTR MaLR 1 364 0 7610 139 9 2 chr13 75012560 75013710 -44731188 + THE1B-int LTR MaLR 1 1158 -422 3851 185 40 24 chr13 75013865 75014686 -44730212 - L1M4c LINE L1 -5531 853 20 310 277 47 43 chr13 75014725 75014960 -44729938 - L1MC/D LINE L1 -1733 4413 4178 1077 243 104 25 chr13 75014994 75015525 -44729373 - L1MC/D LINE L1 -2046 4100 3528 791 221 101 121 chr13 75015532 75016014 -44728884 - LTR28 LTR ERV1 -418 602 8 430 314 101 49 chr13 75016437 75016724 -44728174 + L3 LINE CR1 562 863 -714 22 0 0 0 chr13 75017148 75017170 -44727728 + AT_rich Low_complexity Low_complexity 1 22 0 215 308 103 56 chr13 75017207 75017314 -44727584 - L2 LINE L2 -18 3295 3184 24 77 0 0 chr13 75017612 75017664 -44727234 + AT_rich Low_complexity Low_complexity 1 52 0 1947 227 121 40 chr13 75018287 75018913 -44725985 + L1MC3 LINE L1 6705 7381 -404 773 247 24 84 chr13 75018913 75019245 -44725653 + MER52A LTR ERV1 659 970 -785 15603 78 7 25 chr13 75019365 75021623 -44723275 - HERVH LTR ERV1 -4888 2825 609 305 176 0 0 chr13 75021625 75021676 -44723222 - HERVH LTR ERV1 -7065 648 598 2241 48 0 4 chr13 75022073 75022366 -44722532 - AluY SINE Alu 0 305 14 2086 114 21 7 chr13 75022676 75022966 -44721932 + AluSx SINE Alu 4 297 -15 21 0 0 0 chr13 75023375 75023396 -44721502 + AT_rich Low_complexity Low_complexity 1 21 0 1251 181 172 33 chr13 75023804 75024107 -44720791 + MER2 DNA MER2_type 1 345 0 4089 152 43 15 chr13 75024307 75025058 -44719840 - L1PA16 LINE L1 -3 6163 5392 234 167 0 45 chr13 75025902 75025919 -44718979 + A-rich Low_complexity Low_complexity 3 19 -46 1914 149 7 3 chr13 75025919 75026221 -44718677 + AluSx SINE Alu 1 303 -9 234 167 0 45 chr13 75026221 75026269 -44718629 + A-rich Low_complexity Low_complexity 19 65 0 21 36 0 0 chr13 75026653 75026681 -44718217 + AT_rich Low_complexity Low_complexity 1 28 0 197 353 0 0 chr13 75027025 75027093 -44717805 - MER5B DNA MER1_type -103 75 8 455 264 108 23 chr13 75027093 75027351 -44717547 + L1ME4a LINE L1 5831 6110 -11 194 261 31 31 chr13 75028504 75028569 -44716329 - MIR SINE MIR -59 149 85 243 329 164 46 chr13 75029387 75029606 -44715292 + L2 LINE L2 3016 3260 -12 1612 177 0 32 chr13 75029665 75029947 -44714951 + AluJo SINE Alu 1 273 -39 320 257 14 0 chr13 75030692 75030762 -44714136 + MER20 DNA MER1_type 2 72 -147 469 306 56 20 chr13 75031503 75031699 -44713199 - MIR SINE MIR -57 205 3 334 302 140 30 chr13 75032522 75032757 -44712141 + MIR SINE MIR 2 262 0 600 264 207 11 chr13 75032960 75033221 -44711677 - MER46C DNA MER2_type -22 316 5 391 307 125 33 chr13 75034806 75035135 -44709763 + L1ME LINE L1 750 1108 -5097 1935 125 11 0 chr13 75035186 75035491 -44709407 + AluSx SINE Alu 1 308 0 249 238 77 83 chr13 75035509 75035677 -44709221 + L1ME LINE L1 1185 1351 -4864 320 275 53 16 chr13 75035824 75036013 -44708885 + L1ME LINE L1 1621 1816 -4580 511 289 25 88 chr13 75036413 75036971 -44707927 + L1ME LINE L1 2314 2836 -3379 428 127 16 0 chr13 75036993 75037056 -44707842 - AluSq/x SINE Alu -191 121 58 1565 83 0 20 chr13 75037056 75037260 -44707638 + AluSq SINE Alu 106 305 -8 1980 82 97 0 chr13 75037261 75037528 -44707370 + AluSp SINE Alu 2 294 -19 2171 120 0 7 chr13 75037595 75037903 -44706995 - AluSg SINE Alu -4 306 1 270 317 16 0 chr13 75037990 75038113 -44706785 + L1ME LINE L1 3613 3737 -2478 446 234 89 72 chr13 75038118 75038353 -44706545 + L1ME3A LINE L1 5928 6166 -4 187 333 14 0 chr13 75038871 75038940 -44705958 + L2 LINE L2 3244 3313 0 262 171 53 66 chr13 75040564 75040640 -44704258 + LTR33A LTR ERVL 447 521 -2 225 308 77 0 chr13 75042124 75042189 -44702709 + L2 LINE L2 3194 3263 -50 23 0 0 0 chr13 75042339 75042362 -44702536 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr13 75043015 75043051 -44701847 + AT_rich Low_complexity Low_complexity 1 36 0 326 329 76 12 chr13 75044526 75045028 -44699870 - L1M2 LINE L1 -3193 3022 2489 1091 246 202 54 chr13 75045232 75045802 -44699096 - MLT1E1 LTR MaLR 0 654 1 2309 104 7 0 chr13 75045945 75046253 -44698645 + AluSx SINE Alu 1 310 -2 343 238 63 70 chr13 75046654 75046868 -44698030 - L1M2 LINE L1 -936 1831 1531 1045 119 16 72 chr13 75046993 75047187 -44697711 + LTR1B LTR ERV1 1 183 -643 476 289 163 14 chr13 75047999 75048276 -44696622 - L2 LINE L2 -345 2969 2652 240 403 44 5 chr13 75048387 75048593 -44696305 + L2 LINE L2 2890 3103 -169 465 251 84 42 chr13 75048930 75049145 -44695753 + MER58A DNA MER1_type 1 224 0 251 281 85 60 chr13 75049145 75049380 -44695518 + L2 LINE L2 2866 3106 -166 24 0 0 0 chr13 75051874 75051898 -44693000 + AT_rich Low_complexity Low_complexity 1 24 0 217 280 40 90 chr13 75052834 75052934 -44691964 - L2 LINE L2 -52 3220 3126 313 245 75 11 chr13 75053354 75053448 -44691450 + MIR SINE MIR 125 224 -38 365 322 0 17 chr13 75053687 75053805 -44691093 + MER115 DNA AcHobo 40 155 -538 916 187 35 35 chr13 75053810 75054013 -44690885 + MER3 DNA MER1_type 1 203 -6 1220 305 130 21 chr13 75054043 75054718 -44690180 + L2 LINE L2 1912 2660 -654 297 350 22 22 chr13 75054757 75054894 -44690004 - L2 LINE L2 -235 3078 2942 335 264 0 33 chr13 75055111 75055202 -44689696 - L2 LINE L2 -811 2503 2416 1221 69 29 11 chr13 75055686 75055860 -44689038 + L1PA11 LINE L1 5998 6174 0 2474 74 0 0 chr13 75055922 75056234 -44688664 + AluSp SINE Alu 1 312 -1 2023 185 67 17 chr13 75056483 75056889 -44688009 + MSTB LTR MaLR 1 426 0 1808 173 0 3 chr13 75057221 75057516 -44687382 - AluSx SINE Alu -18 294 1 257 253 44 0 chr13 75058407 75058498 -44686400 + (TA)n Simple_repeat Simple_repeat 1 95 0 24 0 0 0 chr13 75058985 75059009 -44685889 + AT_rich Low_complexity Low_complexity 1 24 0 923 192 45 10 chr13 75059801 75060176 -44684722 + LTR54 LTR ERV1 8 482 -28 318 270 86 7 chr13 75061812 75061964 -44682934 + L1MC4a LINE L1 5736 5899 -1909 215 191 16 111 chr13 75062558 75062582 -44682316 - L2 LINE L2 0 3313 3288 2223 115 0 19 chr13 75062582 75062894 -44682004 - AluSx SINE Alu -6 306 1 215 191 16 111 chr13 75062894 75062932 -44681966 - L2 LINE L2 -25 3288 3257 21 0 0 0 chr13 75062937 75062958 -44681940 + AT_rich Low_complexity Low_complexity 1 21 0 658 273 147 33 chr13 75062970 75063420 -44681478 - LTR33A LTR ERVL 0 523 23 232 294 124 21 chr13 75063948 75064142 -44680756 - L1M4 LINE L1 -2060 4086 3873 1955 113 4 4 chr13 75065032 75065306 -44679592 - AluSx SINE Alu -11 301 28 538 354 62 41 chr13 75066556 75067042 -44677856 + L2 LINE L2 2244 2739 -575 351 316 38 57 chr13 75067091 75067354 -44677544 + L2 LINE L2 2807 3064 -208 2396 218 11 11 chr13 75068724 75069202 -44675696 + MLT2B2 LTR ERVL 30 507 -8 21 0 0 0 chr13 75069577 75069598 -44675300 + AT_rich Low_complexity Low_complexity 1 21 0 330 305 7 46 chr13 75071561 75071712 -44673186 - MIR SINE MIR -34 228 84 1487 162 57 37 chr13 75072926 75073223 -44671675 + MER1B DNA MER1_type 37 339 0 249 108 0 0 chr13 75073668 75073705 -44671193 + (T)n Simple_repeat Simple_repeat 1 37 0 502 262 161 70 chr13 75075426 75076055 -44668843 - L1MEd LINE L1 -4862 1257 572 283 242 95 21 chr13 75076830 75076925 -44667973 - MIR SINE MIR -137 125 24 601 243 58 65 chr13 75076968 75077321 -44667577 + L2 LINE L2 2720 3070 -243 2408 69 3 3 chr13 75077333 75077636 -44667262 + AluY SINE Alu 1 303 -8 24 0 0 0 chr13 75078648 75078672 -44666226 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 75079496 75079524 -44665374 + AT_rich Low_complexity Low_complexity 1 28 0 555 305 76 5 chr13 75079605 75079815 -44665083 + MIR SINE MIR 25 249 -13 184 289 0 53 chr13 75079849 75079925 -44664973 - L2 LINE L2 -2 3311 3240 * 391 300 95 48 chr13 75079906 75080116 -44664782 + MIR SINE MIR 30 249 -13 1158 163 0 0 chr13 75080358 75080548 -44664350 - AluJb SINE Alu -3 309 120 215 59 0 29 chr13 75080802 75080836 -44664062 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1896 156 0 3 chr13 75080838 75081120 -44663778 - AluSx SINE Alu -29 283 3 334 193 68 88 chr13 75081940 75082188 -44662710 + MER112 DNA MER1_type 1 217 -43 1712 180 0 33 chr13 75085404 75085710 -44659188 - AluJb SINE Alu -13 299 4 204 286 143 0 chr13 75085936 75086013 -44658885 - L2 LINE L2 -1642 1672 1585 1315 278 231 26 chr13 75086170 75087513 -44657385 + L2 LINE L2 1650 3296 -17 1498 108 40 5 chr13 75087609 75087831 -44657067 + MER30 DNA MER1_type 1 230 0 450 120 53 0 chr13 75087989 75088064 -44656834 + MADE1 DNA Mariner 2 80 0 370 400 40 0 chr13 75088684 75088834 -44656064 + L2 LINE L2 3117 3272 0 2058 117 0 17 chr13 75089617 75089917 -44654981 - AluSg SINE Alu -15 295 1 525 328 17 6 chr13 75089932 75090106 -44654792 - MIR SINE MIR -76 186 11 32 57 0 0 chr13 75090396 75090449 -44654449 + AT_rich Low_complexity Low_complexity 1 53 0 282 368 38 8 chr13 75092793 75092926 -44651972 - L2 LINE L2 0 3272 3136 182 216 0 0 chr13 75093472 75093509 -44651389 - L2 LINE L2 0 3272 3236 259 72 72 24 chr13 75094856 75094939 -44649959 + (TA)n Simple_repeat Simple_repeat 1 87 0 1076 120 19 0 chr13 75095553 75095711 -44649187 + AluSg/x SINE Alu 145 305 -5 23 33 0 0 chr13 75096356 75096386 -44648512 + AT_rich Low_complexity Low_complexity 1 30 0 347 330 64 17 chr13 75097263 75097436 -44647462 + MIR SINE MIR 32 212 -50 2185 83 18 0 chr13 75098810 75099111 -44645787 + AluSx SINE Alu 1 306 0 979 81 0 0 chr13 75099182 75099305 -44645593 - AluSg/x SINE Alu -14 298 176 2218 106 7 0 chr13 75099406 75099707 -44645191 - AluSq SINE Alu -10 303 1 441 201 231 41 chr13 75099711 75099880 -44645018 + L2 LINE L2 3113 3313 0 677 353 80 18 chr13 75100063 75100573 -44644325 - L3 LINE CR1 -5 1572 1031 23 33 0 0 chr13 75100856 75100886 -44644012 + AT_rich Low_complexity Low_complexity 1 30 0 213 380 0 0 chr13 75100992 75101063 -44643835 - MIR3 SINE MIR -123 85 15 847 227 84 15 chr13 75101501 75101638 -44643260 + L1MA7 LINE L1 5988 6114 -177 2244 120 133 18 chr13 75101638 75102020 -44642878 + MSTC LTR MaLR 1 426 -2 847 227 84 15 chr13 75102020 75102155 -44642743 + L1MA7 LINE L1 6114 6279 -12 37 39 0 0 chr13 75102155 75102206 -44642692 + AT_rich Low_complexity Low_complexity 1 51 0 2091 160 62 22 chr13 75103235 75103684 -44641214 + MLT1C LTR MaLR 1 467 0 333 333 123 26 chr13 75103758 75104100 -44640798 + L2 LINE L2 2863 3237 -35 21 0 0 0 chr13 75104676 75104697 -44640201 + AT_rich Low_complexity Low_complexity 1 21 0 1861 200 81 31 chr13 75105833 75106314 -44638584 - MLT1D LTR MaLR 0 505 1 2269 72 0 62 chr13 75106438 75106759 -44638139 - AluY SINE Alu -10 301 1 489 34 0 0 chr13 75107136 75107195 -44637703 + (CA)n Simple_repeat Simple_repeat 2 60 0 24 0 0 0 chr13 75107702 75107726 -44637172 + AT_rich Low_complexity Low_complexity 1 24 0 251 323 170 31 chr13 75108424 75108653 -44636245 + MIR SINE MIR 2 262 0 198 346 0 0 chr13 75108730 75108782 -44636116 + L2 LINE L2 3247 3298 -15 209 230 14 0 chr13 75108963 75109037 -44635861 + (CA)n Simple_repeat Simple_repeat 2 76 0 286 309 24 0 chr13 75111115 75111238 -44633660 + (TA)n Simple_repeat Simple_repeat 2 127 0 906 225 123 17 chr13 75111689 75111982 -44632916 + LTR48 LTR ERV1 1 324 -463 * 1239 191 50 50 chr13 75111967 75112286 -44632612 + LTR48 LTR ERV1 469 787 0 256 313 30 10 chr13 75113767 75113866 -44631032 - MER91A DNA MER1_type -78 118 18 280 283 33 42 chr13 75114611 75114731 -44630167 - MER5A DNA MER1_type 0 189 71 14032 141 27 6 chr13 75115147 75117515 -44627383 + Tigger1 DNA MER2_type 1 2418 0 2045 80 0 42 chr13 75118500 75118788 -44626110 - AluY SINE Alu -8 303 28 2297 99 0 0 chr13 75118791 75119083 -44625815 - AluSc SINE Alu -17 292 1 258 296 34 11 chr13 75119695 75119783 -44625115 + MIR SINE MIR 61 150 -112 669 216 97 32 chr13 75120207 75120392 -44624506 - MIR SINE MIR -38 224 28 260 280 107 18 chr13 75120461 75120629 -44624269 - LTR67 LTR ERVL -19 538 356 2157 91 34 3 chr13 75121788 75122084 -44622814 - AluSp SINE Alu -8 305 1 196 282 77 13 chr13 75123924 75124002 -44620896 + MIR SINE MIR 31 113 -95 358 249 57 57 chr13 75124072 75124249 -44620649 - L1MEc LINE L1 -3704 2511 2335 23 54 0 0 chr13 75124358 75124395 -44620503 + AT_rich Low_complexity Low_complexity 1 37 0 1213 140 48 4 chr13 75124761 75124989 -44619909 - L1MB2 LINE L1 -2 6169 5932 890 243 97 62 chr13 75125024 75125489 -44619409 - L1MEc LINE L1 -4202 2194 1714 504 234 76 93 chr13 75125482 75125878 -44619020 - L1MEc LINE L1 -4707 1508 1107 * 378 0 0 0 chr13 75125878 75125920 -44618978 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1908 138 0 31 chr13 75125926 75126216 -44618682 - AluSx SINE Alu -31 281 1 504 234 76 93 chr13 75126216 75126300 -44618598 - L1MEc LINE L1 -5113 1102 1062 1100 174 148 8 chr13 75126318 75126554 -44618344 + MSTB LTR MaLR 1 269 -157 1583 147 76 0 chr13 75126554 75126825 -44618073 - AluJb SINE Alu 0 304 15 286 167 5 0 chr13 75126825 75126872 -44618026 + MSTB LTR MaLR 378 428 0 2066 282 103 21 chr13 75126875 75127817 -44617081 - L1MEc LINE L1 -5347 1049 31 2319 106 0 0 chr13 75127837 75128140 -44616758 + AluSc SINE Alu 1 303 -6 210 316 41 20 chr13 75129463 75129561 -44615337 - L2 LINE L2 -19 3294 3195 212 293 112 35 chr13 75130642 75130758 -44614140 - MIR SINE MIR -113 149 25 343 291 50 37 chr13 75130849 75131016 -44613882 - MIR3 SINE MIR -7 201 31 238 254 114 44 chr13 75131598 75131712 -44613186 - L2 LINE L2 -34 3279 3158 609 221 0 39 chr13 75132203 75132330 -44612568 + FLAM_A SINE Alu 1 122 -11 2423 83 0 0 chr13 75136114 75136416 -44608482 + AluSq SINE Alu 1 302 -11 2082 123 7 0 chr13 75138296 75138596 -44606302 + AluSx SINE Alu 1 302 -10 1909 134 14 3 chr13 75139153 75139436 -44605462 - AluSx SINE Alu -16 296 11 260 258 121 0 chr13 75139793 75139859 -44605039 - MLT1G LTR MaLR 0 590 517 686 289 80 0 chr13 75139874 75140113 -44604785 - MIR SINE MIR 0 262 5 253 243 68 27 chr13 75142072 75142146 -44602752 - MIR SINE MIR -1 261 185 289 219 191 9 chr13 75142149 75142254 -44602644 - L2 LINE L2 0 3313 3190 308 312 168 0 chr13 75142723 75142896 -44602002 + L2 LINE L2 3111 3312 -1 233 384 38 32 chr13 75142919 75143104 -44601794 - L2 LINE L2 -283 2989 2804 2191 142 91 8 chr13 75143107 75143502 -44601396 - MSTA LTR MaLR 0 428 1 254 297 127 8 chr13 75143523 75143641 -44601257 - L2 LINE L2 0 3313 3182 2484 84 0 0 chr13 75144894 75145205 -44599693 - AluY SINE Alu 0 311 1 355 313 113 5 chr13 75145879 75146074 -44598824 + MIR SINE MIR 3 218 -44 23 0 0 0 chr13 75146100 75146123 -44598775 + AT_rich Low_complexity Low_complexity 1 23 0 872 201 47 23 chr13 75147303 75147517 -44597381 - MER20 DNA MER1_type 0 219 1 1492 184 22 25 chr13 75147568 75147846 -44597052 + AluJo SINE Alu 3 279 -33 1175 48 24 0 chr13 75147848 75147887 -44597011 + (GGAAA)n Simple_repeat Simple_repeat 1 210 0 1175 48 24 0 chr13 75147887 75148054 -44596844 + (GGAAA)n Simple_repeat Simple_repeat 3 173 0 754 207 120 71 chr13 75148973 75149157 -44595741 + MER33 DNA MER1_type 1 207 -2378 2340 91 3 10 chr13 75149157 75149465 -44595433 - AluSx SINE Alu -6 306 1 754 207 120 71 chr13 75149465 75149589 -44595309 + MER33 DNA MER1_type 207 324 0 312 318 28 0 chr13 75149690 75149797 -44595101 + MER20B DNA MER1_type 58 167 -616 305 288 68 39 chr13 75149843 75150048 -44594850 + L2 LINE L2 2181 2391 -923 35 24 0 0 chr13 75150416 75150458 -44594440 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 75151112 75151133 -44593765 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 75151314 75151358 -44593540 + AT_rich Low_complexity Low_complexity 1 44 0 207 0 0 0 chr13 75151861 75151884 -44593014 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1463 180 87 3 chr13 75152225 75152536 -44592362 + L1MCa LINE L1 23 359 -6067 5146 164 40 13 chr13 75152618 75153588 -44591310 + L1MC1 LINE L1 5338 6333 0 21 57 0 0 chr13 75154062 75154097 -44590801 + AT_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr13 75154207 75154243 -44590655 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr13 75154274 75154294 -44590604 + (CA)n Simple_repeat Simple_repeat 2 21 0 1034 91 0 0 chr13 75155410 75155542 -44589356 + AluY SINE Alu 1 132 -179 797 149 0 37 chr13 75155622 75155756 -44589142 + FLAM_C SINE Alu 2 130 -3 627 257 118 8 chr13 75156828 75157065 -44587833 + L1ME LINE L1 5517 5779 -342 334 291 227 21 chr13 75158951 75159092 -44585806 + MIR3 SINE MIR 10 179 -29 208 405 36 0 chr13 75160526 75160637 -44584261 + L2 LINE L2 3119 3233 -39 623 224 0 0 chr13 75162670 75162786 -44582112 + FLAM_C SINE Alu 1 116 -17 190 111 0 44 chr13 75164639 75164684 -44580214 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1238 241 115 26 chr13 75165021 75165518 -44579380 + HAL1b LINE L1 99 639 -709 272 291 55 50 chr13 75165560 75165759 -44579139 + HAL1b LINE L1 469 668 -680 961 142 34 0 chr13 75166068 75166244 -44578654 + LTR54 LTR ERV1 329 510 0 271 346 39 15 chr13 75166910 75167040 -44577858 + L2 LINE L2 3181 3313 0 414 323 131 32 chr13 75167273 75167586 -44577312 + L2 LINE L2 2430 2773 -541 578 310 65 51 chr13 75167624 75167971 -44576927 + L1ME3A LINE L1 2322 2680 -3466 1760 147 38 14 chr13 75167971 75168263 -44576635 - AluJb SINE Alu -13 299 1 578 310 65 51 chr13 75168263 75168406 -44576492 + L1ME3A LINE L1 2680 2819 -3327 4904 180 35 54 chr13 75168516 75170270 -44574628 + L1MC1 LINE L1 4617 6328 -5 405 0 0 0 chr13 75170274 75170319 -44574579 + (CA)n Simple_repeat Simple_repeat 2 46 0 379 270 164 41 chr13 75170431 75170660 -44574238 + L1ME3A LINE L1 3133 3333 -2813 2183 145 13 20 chr13 75170660 75171053 -44573845 + MLT1B LTR MaLR 1 390 0 379 270 164 41 chr13 75171053 75171379 -44573519 + L1ME3A LINE L1 3333 3756 -2390 940 276 110 27 chr13 75171528 75171797 -44573101 + L1ME3A LINE L1 5259 5504 -666 1871 151 14 0 chr13 75171797 75172100 -44572798 + AluJb SINE Alu 1 307 0 940 276 110 27 chr13 75172100 75172482 -44572416 + L1ME3A LINE L1 5504 5951 -219 806 175 109 9 chr13 75172571 75172850 -44572048 + MLT1A1 LTR MaLR 1 363 -2 826 317 141 14 chr13 75175081 75175668 -44569230 + MLT2F LTR ERVL 2 663 0 896 281 187 20 chr13 75175735 75176243 -44568655 + MLT1G1 LTR MaLR 1 593 -2 1665 181 104 58 chr13 75177438 75177918 -44566980 + MLT1D LTR MaLR 1 502 -3 22 35 0 0 chr13 75178119 75178148 -44566750 + AT_rich Low_complexity Low_complexity 1 29 0 308 233 16 48 chr13 75178533 75178855 -44566043 + GA-rich Low_complexity Low_complexity 1 311 0 525 283 132 14 chr13 75179757 75179969 -44564929 - MIR SINE MIR -14 248 12 22 0 0 0 chr13 75180089 75180111 -44564787 + AT_rich Low_complexity Low_complexity 1 22 0 461 240 44 25 chr13 75181208 75181412 -44563486 + HAL1b LINE L1 276 483 -865 319 302 163 23 chr13 75181641 75181856 -44563042 + HAL1b LINE L1 996 1240 -108 264 347 6 59 chr13 75182421 75182591 -44562307 - MIR SINE MIR -42 220 60 227 54 27 0 chr13 75183367 75183404 -44561494 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 2009 127 3 3 chr13 75183869 75184153 -44560745 + AluSx SINE Alu 1 284 -28 525 216 116 60 chr13 75184625 75184824 -44560074 - MER63A DNA MER1_type 0 210 1 278 330 0 10 chr13 75184836 75184936 -44559962 - L1ME3A LINE L1 -51 6119 6021 32 0 0 0 chr13 75186563 75186595 -44558303 + AT_rich Low_complexity Low_complexity 1 32 0 251 305 96 57 chr13 75187605 75187782 -44557116 - MER91A DNA MER1_type 0 196 13 365 321 24 73 chr13 75188110 75188275 -44556623 + MIR SINE MIR 12 146 -62 306 0 0 0 chr13 75189391 75189425 -44555473 + (CA)n Simple_repeat Simple_repeat 2 35 0 329 303 78 7 chr13 75189456 75189598 -44555300 + MIR SINE MIR 2 153 -109 2237 120 0 0 chr13 75189713 75190014 -44554884 + AluSx SINE Alu 1 301 -11 250 130 65 0 chr13 75191941 75191987 -44552911 + MIR SINE MIR 116 164 -98 5082 178 22 53 chr13 75191989 75192256 -44552642 + L1MC3 LINE L1 6683 6957 -828 2183 113 3 16 chr13 75192256 75192567 -44552331 + AluY SINE Alu 1 307 -4 5082 178 22 53 chr13 75192567 75193257 -44551641 + L1MC3 LINE L1 6957 7602 -183 2968 174 40 20 chr13 75193257 75193849 -44551049 + MER6A DNA MER2_type 1 604 -1 5082 178 22 53 chr13 75193849 75194028 -44550870 + L1MC3 LINE L1 7602 7785 0 37 0 0 0 chr13 75194107 75194144 -44550754 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr13 75194574 75194604 -44550294 + AT_rich Low_complexity Low_complexity 1 30 0 324 313 90 8 chr13 75194828 75194962 -44549936 + MLT1K LTR MaLR 97 241 -347 2318 75 0 20 chr13 75195001 75195307 -44549591 + AluY SINE Alu 1 300 -11 276 313 78 70 chr13 75195313 75195533 -44549365 + MLT1K LTR MaLR 321 545 -43 900 245 77 69 chr13 75195533 75196040 -44548858 - MLT1J LTR MaLR 0 511 1 276 313 78 70 chr13 75196040 75196062 -44548836 + MLT1K LTR MaLR 545 565 -23 797 295 110 69 chr13 75196514 75197664 -44547234 + HAL1 LINE L1 120 1362 -1145 234 0 0 0 chr13 75197664 75197690 -44547208 + (TTG)n Simple_repeat Simple_repeat 2 27 0 797 295 110 69 chr13 75197690 75198200 -44546698 + HAL1 LINE L1 1362 1849 -658 2418 154 99 9 chr13 75198318 75199011 -44545887 + L1MA6 LINE L1 5044 5782 -509 405 39 0 0 chr13 75199019 75199070 -44545828 + (CA)n Simple_repeat Simple_repeat 2 52 0 1492 144 11 0 chr13 75199463 75199726 -44545172 + L1MA6 LINE L1 6035 6300 0 327 275 133 0 chr13 75199759 75199879 -44545019 + MIR SINE MIR 53 188 -74 769 266 58 0 chr13 75201101 75201308 -44543590 - MIR SINE MIR -31 231 13 226 286 14 0 chr13 75202205 75202275 -44542623 - MIR3 SINE MIR -14 194 124 204 200 0 0 chr13 75203843 75203888 -44541010 + GA-rich Low_complexity Low_complexity 5 49 0 2280 107 0 0 chr13 75205659 75205958 -44538940 - AluSx SINE Alu -13 299 1 277 207 138 0 chr13 75205958 75206016 -44538882 + MIR SINE MIR 79 144 -118 2417 45 3 3 chr13 75206038 75206327 -44538571 - AluY SINE Alu -2 309 21 4476 177 56 14 chr13 75206493 75208174 -44536724 - L1PB4 LINE L1 -3 6153 4412 324 0 0 0 chr13 75208176 75208212 -44536686 + (TG)n Simple_repeat Simple_repeat 1 36 0 247 329 46 33 chr13 75208931 75209083 -44535815 - L2 LINE L2 -725 2589 2436 324 252 109 17 chr13 75209614 75209733 -44535165 + L2 LINE L2 3179 3308 -5 336 310 114 19 chr13 75209991 75210149 -44534749 + Tigger8 DNA MER2_type 32 204 -462 30 0 0 0 chr13 75210326 75210356 -44534542 + AT_rich Low_complexity Low_complexity 1 30 0 1374 204 44 14 chr13 75210398 75210692 -44534206 - AluJo SINE Alu -9 303 1 27 29 0 0 chr13 75210847 75210881 -44534017 + AT_rich Low_complexity Low_complexity 1 34 0 370 314 59 8 chr13 75211495 75211613 -44533285 + L2 LINE L2 3149 3272 0 1020 214 20 58 chr13 75211724 75212019 -44532879 - L1MD2 LINE L1 -65 6294 6011 2358 84 0 0 chr13 75212726 75213025 -44531873 - AluSg1 SINE Alu -10 299 1 198 226 97 16 chr13 75213912 75213974 -44530924 + MIR3 SINE MIR 10 76 -132 1056 201 18 19 chr13 75214564 75214860 -44530038 - MER2 DNA MER2_type -1 344 1 181 321 12 24 chr13 75214965 75215049 -44529849 - L2 LINE L2 -995 2319 2237 618 292 115 45 chr13 75215488 75215580 -44529318 + L1ME4a LINE L1 5273 5357 -764 2183 113 0 19 chr13 75215580 75215898 -44529000 + AluSx SINE Alu 1 312 0 618 292 115 45 chr13 75215898 75216394 -44528504 + L1ME4a LINE L1 5357 5897 -224 534 255 132 10 chr13 75216420 75216624 -44528274 - MIR SINE MIR -10 252 24 225 340 10 31 chr13 75217907 75218004 -44526894 - L3 LINE CR1 -5 1572 1478 323 291 36 92 chr13 75220789 75221011 -44523887 + MIR SINE MIR 52 260 -2 286 292 149 21 chr13 75221554 75221842 -44523056 - L1ME4a LINE L1 -239 5882 5558 252 161 18 0 chr13 75223301 75223357 -44521541 - L1MB3 LINE L1 -2 6181 6125 1045 163 172 5 chr13 75226160 75226381 -44518517 + MLT1C LTR MaLR 6 263 -204 1020 229 9 9 chr13 75226486 75226704 -44518194 + MLT1C LTR MaLR 250 467 0 536 281 48 24 chr13 75226843 75227010 -44517888 - MER5B DNA MER1_type -6 172 2 250 241 35 113 chr13 75227041 75227182 -44517716 - MER5B DNA MER1_type -20 158 29 529 280 129 0 chr13 75228354 75228540 -44516358 + MER63A DNA MER1_type 1 210 0 2428 67 0 3 chr13 75229163 75229460 -44515438 - AluY SINE Alu -15 296 1 2417 148 68 2 chr13 75231487 75231960 -44512938 - L1MA8 LINE L1 -3 6288 5785 204 208 38 0 chr13 75232313 75232366 -44512532 + (TA)n Simple_repeat Simple_repeat 2 56 0 288 0 0 0 chr13 75232778 75232810 -44512088 + (T)n Simple_repeat Simple_repeat 1 32 0 308 323 30 8 chr13 75232845 75232978 -44511920 - L1ME3A LINE L1 -3 6167 6032 1100 243 138 59 chr13 75232993 75233406 -44511492 - L1ME3A LINE L1 -181 5981 5515 1807 156 0 17 chr13 75233406 75233707 -44511191 + AluJo SINE Alu 1 296 -16 1100 243 138 59 chr13 75233707 75233966 -44510932 - L1ME3A LINE L1 -647 5515 5278 204 338 53 53 chr13 75234317 75234450 -44510448 - L2 LINE L2 -251 3021 2889 434 308 51 13 chr13 75234592 75234748 -44510150 - MIR SINE MIR -1 261 100 23 0 0 0 chr13 75235001 75235024 -44509874 + AT_rich Low_complexity Low_complexity 1 23 0 339 286 31 10 chr13 75235065 75235163 -44509735 + MIR SINE MIR 12 111 -151 753 178 31 0 chr13 75236090 75236219 -44508679 + FLAM_A SINE Alu 1 133 0 570 209 131 60 chr13 75238111 75238236 -44506662 - MER33 DNA MER1_type -2261 324 209 980 229 73 31 chr13 75238236 75238563 -44506335 + MER2 DNA MER2_type 4 344 0 570 209 131 60 chr13 75238563 75238720 -44506178 - MER33 DNA MER1_type -2376 209 22 1608 201 24 0 chr13 75239828 75240126 -44504772 + AluSx SINE Alu 3 307 -5 338 323 203 0 chr13 75240569 75240761 -44504137 + MIR SINE MIR 2 232 -30 380 243 75 19 chr13 75241368 75241475 -44503423 - MIR3 SINE MIR -28 180 68 707 275 108 23 chr13 75241887 75242229 -44502669 - L1ME3A LINE L1 -9 6161 5791 316 244 85 109 chr13 75242308 75242494 -44502404 - L1ME3A LINE L1 -1858 4288 4110 2144 54 30 24 chr13 75242494 75242791 -44502107 + AluY SINE Alu 1 299 -12 316 244 85 109 chr13 75242791 75242887 -44502011 - L1ME3A LINE L1 -2036 4110 4013 710 245 139 19 chr13 75245757 75245973 -44498925 + MIR SINE MIR 11 252 -10 26 0 0 0 chr13 75246174 75246200 -44498698 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr13 75246394 75246422 -44498476 + AT_rich Low_complexity Low_complexity 1 28 0 180 337 11 21 chr13 75247203 75247298 -44497600 + MIR SINE MIR 167 260 -2 1741 182 27 3 chr13 75247592 75247889 -44497009 + AluJb SINE Alu 3 306 -6 213 397 48 11 chr13 75250113 75250302 -44494596 - MIR SINE MIR -11 251 56 2328 83 0 22 chr13 75250493 75250806 -44494092 - AluY SINE Alu -5 306 1 866 136 14 7 chr13 75252166 75252313 -44492585 - L1 LINE L1 -1897 4249 4102 648 321 27 5 chr13 75252624 75252845 -44492053 - MIR SINE MIR -25 237 12 196 314 0 0 chr13 75255795 75255846 -44489052 - L2 LINE L2 0 3272 3222 183 310 180 0 chr13 75256239 75256339 -44488559 - MIR3 SINE MIR -9 199 82 207 0 0 0 chr13 75256697 75256720 -44488178 + (CA)n Simple_repeat Simple_repeat 2 24 0 1297 172 39 21 chr13 75257875 75258108 -44486790 + AluJo SINE Alu 1 237 -75 29 28 0 0 chr13 75258143 75258179 -44486719 + AT_rich Low_complexity Low_complexity 1 36 0 2055 154 0 0 chr13 75260046 75260352 -44484546 - AluSx SINE Alu -6 306 1 367 314 81 8 chr13 75260469 75260593 -44484305 - L2 LINE L2 -19 3253 3121 814 211 132 14 chr13 75260624 75260837 -44484061 - MER8 DNA MER2_type -1 238 1 520 346 113 12 chr13 75261248 75261808 -44483090 - L2 LINE L2 -786 2528 1913 2376 59 0 23 chr13 75262900 75263206 -44481692 + AluY SINE Alu 1 299 -12 387 0 0 0 chr13 75263859 75263902 -44480996 + (TA)n Simple_repeat Simple_repeat 1 43 0 1388 163 97 4 chr13 75263951 75264208 -44480690 + AluJo SINE Alu 2 282 -30 2254 138 11 6 chr13 75264368 75264730 -44480168 + THE1B LTR MaLR 1 364 0 426 107 5 0 chr13 75266051 75266119 -44478779 - MLT1A1 LTR MaLR -254 111 39 625 78 0 0 chr13 75266125 75266215 -44478683 - L1PA14 LINE L1 -3 6158 6069 246 217 72 29 chr13 75266530 75266599 -44478299 + L2 LINE L2 3242 3313 0 429 257 27 75 chr13 75266880 75267067 -44477831 + MER5B DNA MER1_type 1 178 0 242 226 0 0 chr13 75267467 75267520 -44477378 + L1MB8 LINE L1 5703 5755 -604 687 132 16 8 chr13 75267548 75267669 -44477229 + L1MB8 LINE L1 6052 6173 -5 1150 165 36 157 chr13 75267749 75268137 -44476761 - MLT1A1 LTR MaLR -2 363 26 4541 88 2 3 chr13 75268137 75268761 -44476137 - L1PA14 LINE L1 -3 6158 5536 1150 165 36 157 chr13 75268761 75268785 -44476113 - MLT1A1 LTR MaLR -339 26 1 187 359 19 39 chr13 75269015 75269118 -44475780 + MIR3 SINE MIR 5 105 -103 280 208 13 26 chr13 75270376 75270453 -44474445 - HsTC2 DNA Tc2 -29 1869 1794 1373 149 89 4 chr13 75270625 75270906 -44473992 + L1MB3 LINE L1 5877 6181 -2 2741 135 41 2 chr13 75271183 75271643 -44473255 + L1MB2 LINE L1 5446 5923 -248 1472 178 18 50 chr13 75271651 75271932 -44472966 + AluJo SINE Alu 1 272 -40 426 134 0 61 chr13 75271932 75272014 -44472884 + L1MB2 LINE L1 6056 6132 -39 246 337 0 34 chr13 75272060 75272149 -44472749 + MER5A DNA MER1_type 69 154 -35 268 341 118 18 chr13 75272656 75272826 -44472072 + MIR SINE MIR 61 247 -15 194 269 104 0 chr13 75273059 75273126 -44471772 - L2 LINE L2 -3 3269 3196 1388 146 0 23 chr13 75273540 75273760 -44471138 + AluJo SINE Alu 1 215 -97 1502 158 35 11 chr13 75274725 75274985 -44469913 + AluJb SINE Alu 1 266 -46 426 20 0 0 chr13 75274988 75275039 -44469859 + (CA)n Simple_repeat Simple_repeat 2 52 0 294 206 14 14 chr13 75275175 75275248 -44469650 - MER116 DNA Mariner -3 77 5 441 353 58 5 chr13 75276935 75277125 -44467773 - MIR SINE MIR -18 244 45 445 325 24 6 chr13 75277160 75277329 -44467569 - MER5A DNA MER1_type 0 189 18 34 62 3 0 chr13 75277441 75277550 -44467348 + AT_rich Low_complexity Low_complexity 1 76 0 192 40 0 0 chr13 75277606 75277631 -44467267 + (TTA)n Simple_repeat Simple_repeat 1 25 0 3398 28 5 0 chr13 75277632 75278032 -44466866 - L1PA3 LINE L1 -18 6137 5736 2556 147 19 14 chr13 75278144 75278574 -44466324 - Tigger2a DNA MER2_type -2 432 1 25 0 0 0 chr13 75278823 75278848 -44466050 + AT_rich Low_complexity Low_complexity 1 25 0 234 291 78 68 chr13 75279019 75279122 -44465776 - L2 LINE L2 -24 3248 3145 * 262 330 0 30 chr13 75279119 75279219 -44465679 + MIR SINE MIR 44 140 -68 1389 176 144 0 chr13 75279767 75280023 -44464875 - AluSx SINE Alu -9 293 1 253 327 65 55 chr13 75280138 75280337 -44464561 + MIR SINE MIR 20 220 -42 2892 220 51 26 chr13 75280982 75281849 -44463049 + L1M4 LINE L1 3670 4557 -1589 570 202 0 0 chr13 75281841 75281940 -44462958 - L1MC1 LINE L1 -66 6267 6169 * 397 235 10 0 chr13 75281937 75282035 -44462863 + L1M4 LINE L1 4559 4657 -1489 * 957 230 27 0 chr13 75282036 75282358 -44462540 - L1MC/D LINE L1 -743 5403 5132 1718 249 25 8 chr13 75282376 75282862 -44462036 + L1MC/D LINE L1 4643 5136 -1010 1523 138 4 19 chr13 75282856 75283124 -44461774 - L1MC1 LINE L1 -361 5972 5709 * 1640 201 20 11 chr13 75283125 75283478 -44461420 + L1MC1 LINE L1 5959 6314 -19 771 163 88 89 chr13 75283480 75283505 -44461393 + L1M4 LINE L1 5114 5138 -1028 2312 83 0 26 chr13 75283505 75283807 -44461091 + AluY SINE Alu 3 296 -15 771 163 88 89 chr13 75283807 75283871 -44461027 + L1M4 LINE L1 5138 5201 -965 1861 124 15 0 chr13 75283871 75284145 -44460753 + AluSx SINE Alu 35 312 0 771 163 88 89 chr13 75284145 75284370 -44460528 + L1M4 LINE L1 5201 5424 -742 401 280 33 44 chr13 75284523 75284705 -44460193 + MLT1L LTR MaLR 433 612 -3 194 220 51 34 chr13 75285086 75285145 -44459753 + MIR3 SINE MIR 142 201 -7 27 0 0 0 chr13 75285208 75285235 -44459663 + AT_rich Low_complexity Low_complexity 1 27 0 240 94 0 0 chr13 75285583 75285615 -44459283 - Alu SINE Alu -127 173 142 222 333 194 0 chr13 75285966 75286059 -44458839 + L2 LINE L2 3144 3254 -18 2174 129 3 0 chr13 75286085 75286395 -44458503 - AluSq SINE Alu -2 311 1 1859 170 3 3 chr13 75286886 75287180 -44457718 - AluJo SINE Alu -14 298 5 212 212 57 93 chr13 75288495 75288572 -44456326 + MIR SINE MIR 89 148 -60 222 37 0 0 chr13 75289210 75289237 -44455661 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 75289347 75289370 -44455528 + AT_rich Low_complexity Low_complexity 1 23 0 1704 167 17 13 chr13 75290563 75290862 -44454036 + AluJo SINE Alu 3 302 -10 216 396 89 10 chr13 75291222 75291323 -44453575 + L2 LINE L2 3138 3246 -26 521 232 32 75 chr13 75291666 75291830 -44453068 + L1MC4a LINE L1 6443 6563 -1245 1880 158 3 0 chr13 75291830 75292114 -44452784 + AluSx SINE Alu 1 285 -27 521 232 32 75 chr13 75292114 75292168 -44452730 + L1MC4a LINE L1 6563 6618 -1190 2336 198 153 20 chr13 75292258 75292930 -44451968 + LTR48 LTR ERV1 17 542 0 1865 236 47 42 chr13 75292968 75293432 -44451466 + L1MC4 LINE L1 6746 7215 -827 2306 105 0 0 chr13 75293432 75293737 -44451161 + AluSg SINE Alu 1 305 -5 1865 236 47 42 chr13 75293737 75293908 -44450990 + L1MC4 LINE L1 7215 7384 -658 2167 99 7 3 chr13 75293910 75294204 -44450694 + AluSq SINE Alu 1 295 -18 448 273 125 54 chr13 75294223 75294575 -44450323 + L1MC4 LINE L1 7522 7898 -144 28 61 0 0 chr13 75294661 75294710 -44450188 + AT_rich Low_complexity Low_complexity 1 49 0 28 0 0 0 chr13 75296854 75296882 -44448016 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 75297809 75297830 -44447068 + AT_rich Low_complexity Low_complexity 1 21 0 1590 185 56 34 chr13 75298419 75298776 -44446122 - MLT1A1 LTR MaLR 0 365 1 512 175 31 0 chr13 75299832 75299929 -44444969 - MER5A DNA MER1_type -80 109 10 1795 158 0 10 chr13 75300004 75300295 -44444603 - AluJb SINE Alu -24 288 1 376 348 26 0 chr13 75300691 75300806 -44444092 + L2 LINE L2 3136 3253 -19 370 247 169 34 chr13 75301596 75301774 -44443124 - MIR SINE MIR 0 262 61 1227 183 18 0 chr13 75301796 75302015 -44442883 - AluJb SINE Alu -4 308 86 552 264 123 27 chr13 75302186 75302406 -44442492 + MIR SINE MIR 1 241 -21 2107 113 14 3 chr13 75303202 75303495 -44441403 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr13 75303896 75303919 -44440979 + AT_rich Low_complexity Low_complexity 1 23 0 439 208 13 0 chr13 75304781 75304858 -44440040 - L2 LINE L2 -12 3301 3224 206 297 109 0 chr13 75305087 75305151 -44439747 + MIR SINE MIR 8 78 -184 2061 127 0 22 chr13 75305248 75305562 -44439336 + AluSx SINE Alu 1 307 -5 841 253 133 17 chr13 75306470 75306830 -44438068 - L1MC/D LINE L1 -1988 5820 5419 28 29 0 0 chr13 75306857 75306892 -44438006 + AT_rich Low_complexity Low_complexity 1 35 0 192 306 97 52 chr13 75307194 75307328 -44437570 - MIR SINE MIR 0 262 123 189 264 57 0 chr13 75310614 75310667 -44434231 + L2 LINE L2 3248 3303 -10 228 257 71 0 chr13 75311225 75311295 -44433603 + MLT1J LTR MaLR 1 75 -436 388 303 23 15 chr13 75311540 75311672 -44433226 + MLT1J LTR MaLR 300 432 -79 488 330 109 39 chr13 75311943 75312255 -44432643 + L2 LINE L2 2564 2897 -417 189 281 31 0 chr13 75312255 75312319 -44432579 + MIR SINE MIR 191 256 -6 188 345 72 29 chr13 75312316 75312455 -44432443 + L2 LINE L2 2882 3026 -246 * 24 32 0 0 chr13 75312760 75312791 -44432107 + AT_rich Low_complexity Low_complexity 1 31 0 356 399 76 27 chr13 75312889 75313669 -44431229 - L2 LINE L2 -2223 1091 274 847 258 96 75 chr13 75314329 75314872 -44430026 + LTR67 LTR ERVL 4 557 0 554 65 9 4 chr13 75315142 75315358 -44429540 + AluY SINE Alu 1 307 -2 729 310 33 40 chr13 75315914 75316363 -44428535 - MLT1J1 LTR MaLR 0 446 1 577 273 84 17 chr13 75316906 75317144 -44427754 + MLT1L LTR MaLR 139 392 -223 261 245 0 0 chr13 75317611 75317664 -44427234 - L2 LINE L2 -1 3271 3219 193 152 30 0 chr13 75317793 75317826 -44427072 - MIR SINE MIR -6 256 223 2309 73 16 28 chr13 75318946 75319263 -44425635 + AluSp SINE Alu 1 313 0 371 300 31 31 chr13 75320097 75320227 -44424671 - L2 LINE L2 -1 3271 3142 206 305 103 30 chr13 75320253 75320386 -44424512 - MIR SINE MIR -55 153 33 271 322 17 26 chr13 75320982 75321097 -44423801 + MLT1J LTR MaLR 141 254 -257 291 93 0 0 chr13 75321632 75321675 -44423223 - tRNA-Cys-TGC tRNA tRNA -32 43 1 2229 71 7 39 chr13 75321689 75321998 -44422900 - AluY SINE Alu -12 299 1 979 235 0 10 chr13 75322325 75322529 -44422369 - AluJo SINE Alu -110 202 1 303 218 197 90 chr13 75323220 75323454 -44421444 + L1ME4a LINE L1 5831 6089 -32 21 0 0 0 chr13 75326148 75326169 -44418729 + AT_rich Low_complexity Low_complexity 1 21 0 1461 90 9 0 chr13 75326542 75326772 -44418126 - L1M2 LINE L1 -593 5709 5466 1748 199 50 41 chr13 75328153 75328616 -44416282 - MLT1C LTR MaLR 0 467 1 590 272 67 84 chr13 75329895 75330642 -44414256 - HAL1 LINE L1 -1305 1202 469 274 270 20 40 chr13 75331379 75331479 -44413419 + MER94 DNA DNA 37 134 0 2408 90 0 0 chr13 75332155 75332465 -44412433 + AluSg SINE Alu 1 310 0 1975 140 20 0 chr13 75333670 75333963 -44410935 - AluSx SINE Alu -13 299 1 273 330 92 6 chr13 75334113 75334286 -44410612 - L1MC/D LINE L1 -2019 5789 5602 22 80 0 0 chr13 75334300 75334350 -44410548 + AT_rich Low_complexity Low_complexity 1 50 0 248 296 89 52 chr13 75334377 75334759 -44410139 - L1MEc LINE L1 -4738 1572 1177 356 345 67 30 chr13 75334773 75334938 -44409960 - L1MEc LINE L1 -5020 1099 929 2555 152 39 2 chr13 75335111 75335597 -44409301 - L1MA8 LINE L1 -6 6285 5782 2452 51 0 16 chr13 75335697 75336013 -44408885 - AluY SINE Alu 0 311 1 233 290 70 20 chr13 75336228 75336428 -44408470 - HAL1b LINE L1 -437 911 702 390 307 69 47 chr13 75337125 75337399 -44407499 - L1MC/D LINE L1 -1310 4836 4557 21 36 0 0 chr13 75337431 75337459 -44407439 + AT_rich Low_complexity Low_complexity 1 28 0 259 321 54 0 chr13 75337511 75337623 -44407275 + L2 LINE L2 3195 3312 -1 180 125 0 0 chr13 75339260 75339292 -44405606 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 192 293 12 12 chr13 75340030 75340112 -44404786 + L2 LINE L2 2156 2237 -1077 293 338 65 85 chr13 75340392 75340732 -44404166 - L2 LINE L2 -18 3254 2922 660 293 87 24 chr13 75341168 75341594 -44403304 + Tigger8 DNA MER2_type 3 455 -211 232 345 65 36 chr13 75342013 75342152 -44402746 - MIR3 SINE MIR -64 144 2 207 0 0 0 chr13 75342854 75342877 -44402021 + (TG)n Simple_repeat Simple_repeat 2 24 0 1737 130 45 4 chr13 75342890 75343159 -44401739 - AluSx SINE Alu -20 292 13 22 0 0 0 chr13 75345539 75345561 -44399337 + AT_rich Low_complexity Low_complexity 1 22 0 189 293 52 17 chr13 75345770 75345828 -44399070 - MIR SINE MIR -113 149 90 1248 261 91 40 chr13 75346444 75346517 -44398381 + L1MCc LINE L1 1260 1328 -5613 1984 155 3 3 chr13 75346517 75346827 -44398071 + AluSx SINE Alu 1 310 -2 1248 261 91 40 chr13 75346827 75347666 -44397232 + L1MCc LINE L1 1328 2123 -4818 2023 130 13 0 chr13 75347666 75347965 -44396933 + AluSx SINE Alu 1 303 -9 1248 261 91 40 chr13 75347965 75348731 -44396167 + L1MCc LINE L1 2123 3402 -3539 553 224 0 18 chr13 75348749 75348919 -44395979 + L1MCc LINE L1 4338 4504 -2437 338 261 25 38 chr13 75349307 75349464 -44395434 + L1 LINE L1 5655 5809 -1132 273 98 0 0 chr13 75349990 75350031 -44394867 + (CA)n Simple_repeat Simple_repeat 2 42 0 217 277 46 30 chr13 75350197 75350363 -44394535 + MIR SINE MIR 10 198 -64 434 248 28 0 chr13 75350835 75350980 -44393918 + MER103 DNA DNA 4 152 -14 762 54 27 0 chr13 75351737 75351849 -44393049 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 201 269 0 0 chr13 75351983 75352050 -44392848 + GA-rich Low_complexity Low_complexity 3 69 0 204 284 37 83 chr13 75352234 75352343 -44392555 - MIR3 SINE MIR -49 159 56 1894 148 28 7 chr13 75353355 75353646 -44391252 + AluSx SINE Alu 2 298 -14 420 20 0 0 chr13 75355414 75355463 -44389435 + (TG)n Simple_repeat Simple_repeat 1 49 0 533 292 40 49 chr13 75355511 75355737 -44389161 - MIR SINE MIR -11 251 28 * 1141 284 53 24 chr13 75355734 75356150 -44388748 + L2 LINE L2 837 1264 -2050 746 175 0 8 chr13 75357028 75357154 -44387744 + FLAM_C SINE Alu 1 125 -18 201 74 0 0 chr13 75357602 75357629 -44387269 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 340 303 115 98 chr13 75357891 75358412 -44386486 - L1M2 LINE L1 -5564 1285 756 219 215 51 51 chr13 75358552 75358710 -44386188 + (CGGG)n Simple_repeat Simple_repeat 2 159 0 31 0 0 0 chr13 75358774 75358805 -44386093 + GC_rich Low_complexity Low_complexity 1 31 0 483 233 109 35 chr13 75360668 75360870 -44384028 - L1MC5 LINE L1 -44 7917 7701 1849 233 79 27 chr13 75360931 75361825 -44383073 - L1MD3 LINE L1 -119 7876 6687 620 241 149 73 chr13 75363017 75363290 -44381608 + MLT1C LTR MaLR 28 339 -128 2208 122 7 0 chr13 75363290 75363586 -44381312 - AluSx SINE Alu -12 300 3 620 241 149 73 chr13 75363586 75363723 -44381175 + MLT1C LTR MaLR 339 464 -3 877 139 101 13 chr13 75363915 75364073 -44380825 - MER1B DNA MER1_type 0 339 168 22 35 0 0 chr13 75364375 75364404 -44380494 + AT_rich Low_complexity Low_complexity 1 29 0 1770 166 18 3 chr13 75364505 75364836 -44380062 - Tigger1 DNA MER2_type -1 2417 2082 * 5581 129 38 20 chr13 75364828 75365810 -44379088 - Tigger1 DNA MER2_type -530 1888 890 24 32 0 0 chr13 75366418 75366449 -44378449 + AT_rich Low_complexity Low_complexity 1 31 0 2025 97 0 0 chr13 75366717 75366976 -44377922 - AluSx SINE Alu -15 297 39 288 259 98 21 chr13 75367704 75367847 -44377051 + Charlie8 DNA MER1_type 27 180 -2237 928 204 41 66 chr13 75368796 75369115 -44375783 - MLT1A1 LTR MaLR 0 365 55 367 313 75 0 chr13 75369702 75369836 -44375062 - LTR67 LTR ERVL -21 536 393 1960 128 55 3 chr13 75370086 75370375 -44374523 - AluSx SINE Alu -7 305 2 662 261 84 35 chr13 75370680 75370941 -44373957 + LTR33 LTR ERVL 1 274 -247 21 36 0 0 chr13 75371633 75371661 -44373237 + AT_rich Low_complexity Low_complexity 1 28 0 245 125 18 0 chr13 75371943 75371999 -44372899 + (CA)n Simple_repeat Simple_repeat 1 57 0 309 133 0 48 chr13 75372493 75372576 -44372322 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 890 222 113 24 chr13 75372927 75373220 -44371678 + MER5C DNA MER1_type 1 319 -5 234 233 0 0 chr13 75375856 75375899 -44368999 + polypyrimidine Low_complexity Low_complexity 2 44 0 1581 204 63 16 chr13 75379783 75380161 -44364737 - MSTD LTR MaLR 0 396 1 2179 115 7 7 chr13 75380244 75380548 -44364350 + AluSg1 SINE Alu 5 308 -1 626 215 8 0 chr13 75381540 75381661 -44363237 + FLAM_A SINE Alu 1 122 -11 285 51 0 0 chr13 75382369 75382408 -44362490 + (CA)n Simple_repeat Simple_repeat 2 40 0 317 260 21 21 chr13 75383347 75383443 -44361455 + MIR SINE MIR 20 115 -93 2109 125 0 0 chr13 75383458 75383755 -44361143 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr13 75384214 75384236 -44360662 + AT_rich Low_complexity Low_complexity 1 22 0 197 264 69 0 chr13 75384990 75385062 -44359836 - MIR SINE MIR -55 207 131 390 331 94 9 chr13 75385233 75385498 -44359400 + L1MC4a LINE L1 5633 5928 -193 3327 90 41 17 chr13 75385575 75386111 -44358787 + L1MA1 LINE L1 5675 6223 -79 2021 148 0 3 chr13 75386867 75387177 -44357721 + AluSq SINE Alu 1 309 -4 676 267 62 24 chr13 75388399 75388609 -44356289 - MIR SINE MIR -44 218 1 278 217 13 76 chr13 75389023 75389180 -44355718 + MER103 DNA DNA 1 147 -19 3258 273 94 62 chr13 75389265 75389582 -44355316 + L2 LINE L2 1242 1547 -1766 2208 114 0 16 chr13 75389582 75389888 -44355010 - AluSg SINE Alu -9 301 1 3258 273 94 62 chr13 75389888 75390416 -44354482 + L2 LINE L2 1547 2056 -1257 225 0 0 0 chr13 75390416 75390441 -44354457 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3258 273 94 62 chr13 75390441 75390491 -44354407 + L2 LINE L2 2056 2103 -1210 2037 138 0 0 chr13 75390491 75390788 -44354110 - AluSx SINE Alu -15 297 1 3258 273 94 62 chr13 75390788 75391901 -44352997 + L2 LINE L2 2103 3313 0 3069 174 70 12 chr13 75391982 75392643 -44352255 - MER44D DNA MER2_type 0 605 35 1781 155 0 7 chr13 75393042 75393351 -44351547 + AluJb SINE Alu 1 307 0 1873 144 4 7 chr13 75394274 75394551 -44350347 + AluJb SINE Alu 1 276 -36 414 0 0 0 chr13 75394559 75394605 -44350293 + (TAA)n Simple_repeat Simple_repeat 3 48 0 2106 101 3 34 chr13 75395619 75395917 -44348981 + AluSc SINE Alu 1 289 -20 189 121 0 0 chr13 75397059 75397092 -44347806 + (CCCCCG)n Simple_repeat Simple_repeat 3 35 0 198 0 0 0 chr13 75397188 75397210 -44347688 + (CACCC)n Simple_repeat Simple_repeat 1 22 0 228 163 0 0 chr13 75397506 75397549 -44347349 + (TG)n Simple_repeat Simple_repeat 1 43 0 186 133 0 0 chr13 75397548 75397578 -44347320 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 517 322 12 55 chr13 75400673 75400886 -44344012 - MIR3 SINE MIR -2 206 1 315 250 42 90 chr13 75402316 75402427 -44342471 + MIR SINE MIR 51 155 -107 2231 99 79 17 chr13 75402427 75402780 -44342118 + THE1C LTR MaLR 1 375 0 315 250 42 90 chr13 75402780 75402812 -44342086 + MIR SINE MIR 155 187 -75 206 304 0 29 chr13 75403297 75403366 -44341532 + L2 LINE L2 1888 1954 -1360 520 321 0 47 chr13 75403367 75403557 -44341341 + L2 LINE L2 2554 2734 -580 332 224 71 24 chr13 75403562 75403647 -44341251 + L2 LINE L2 3169 3257 -15 205 278 65 37 chr13 75403820 75403928 -44340970 - MIR SINE MIR -82 126 16 23 0 0 0 chr13 75405251 75405274 -44339624 + AT_rich Low_complexity Low_complexity 1 23 0 2183 91 7 7 chr13 75405274 75405559 -44339339 - AluSc SINE Alu -24 285 1 626 221 19 9 chr13 75406182 75406390 -44338508 + L1M4 LINE L1 4270 4480 -1662 840 124 62 12 chr13 75406390 75406551 -44338347 + L1MC2 LINE L1 6165 6333 -11 505 319 95 22 chr13 75406667 75406899 -44337999 + MIR SINE MIR 2 250 -12 22 0 0 0 chr13 75407230 75407252 -44337646 + AT_rich Low_complexity Low_complexity 1 22 0 252 59 0 0 chr13 75407323 75407357 -44337541 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 214 174 0 0 chr13 75408275 75408321 -44336577 + T-rich Low_complexity Low_complexity 1 46 0 40734 32 24 2 chr13 75408321 75414347 -44330551 - L1PA3 LINE L1 0 6155 1 2027 144 42 33 chr13 75414616 75414977 -44329921 - THE1B LTR MaLR 0 364 1 187 354 163 0 chr13 75415109 75415256 -44329642 - L2 LINE L2 -57 3215 3045 6010 58 4 1 chr13 75415320 75416117 -44328781 - L1PA8 LINE L1 -4 6168 5370 200 278 69 83 chr13 75416119 75416263 -44328635 - L2 LINE L2 -262 3051 2910 186 299 124 51 chr13 75416667 75416804 -44328094 + L2 LINE L2 2715 2861 -453 256 329 138 21 chr13 75417474 75417670 -44327228 - L2 LINE L2 -840 2474 2232 437 0 19 0 chr13 75417670 75417723 -44327175 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 256 329 138 21 chr13 75417723 75417815 -44327083 - L2 LINE L2 -1082 2232 2152 247 381 21 0 chr13 75417889 75417986 -44326912 - MIR3 SINE MIR -16 192 94 746 175 0 8 chr13 75420022 75420148 -44324750 - FLAM_C SINE Alu -18 125 1 1141 284 53 24 chr13 75421026 75421442 -44323456 - L2 LINE L2 -2050 1264 837 533 292 40 49 chr13 75421439 75421665 -44323233 + MIR SINE MIR 28 251 -11 * 420 20 0 0 chr13 75421713 75421762 -44323136 + (CA)n Simple_repeat Simple_repeat 1 49 0 1894 148 28 7 chr13 75423530 75423821 -44321077 - AluSx SINE Alu -14 298 2 204 284 37 83 chr13 75424833 75424942 -44319956 + MIR3 SINE MIR 56 159 -49 201 269 0 0 chr13 75425126 75425200 -44319698 + CT-rich Low_complexity Low_complexity 1 74 0 762 54 27 0 chr13 75425327 75425439 -44319459 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 434 248 28 0 chr13 75426196 75426341 -44318557 - MER103 DNA DNA -14 152 4 217 277 46 30 chr13 75426813 75426979 -44317919 - MIR SINE MIR -64 198 10 273 98 0 0 chr13 75427145 75427186 -44317712 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 355 32 21 chr13 75427533 75427626 -44317272 + L2 LINE L2 3210 3303 -10 2552 57 0 0 chr13 75428250 75428550 -44316348 + AluY SINE Alu 1 300 -11 238 317 0 37 chr13 75428667 75428749 -44316149 + MIR SINE MIR 16 94 -114 279 0 0 0 chr13 75429065 75429096 -44315802 + (TG)n Simple_repeat Simple_repeat 2 32 0 408 20 0 0 chr13 75430532 75430581 -44314317 + (TG)n Simple_repeat Simple_repeat 2 50 0 326 365 36 18 chr13 75430660 75430827 -44314071 + MIR3 SINE MIR 35 204 -4 545 268 75 24 chr13 75431177 75431603 -44313295 - LTR16C LTR ERVL -13 478 1 212 267 100 0 chr13 75432248 75432308 -44312590 + L2 LINE L2 3239 3304 -9 213 94 0 0 chr13 75432504 75432536 -44312362 + (CA)n Simple_repeat Simple_repeat 2 33 0 1725 186 7 0 chr13 75432650 75433006 -44311892 + AluJo SINE Alu 1 358 0 1135 99 44 16 chr13 75433338 75433520 -44311378 + L1PB1 LINE L1 5965 6151 0 1736 176 58 15 chr13 75434780 75435109 -44309789 + MER2 DNA MER2_type 2 344 0 330 194 0 0 chr13 75435180 75435247 -44309651 + (TA)n Simple_repeat Simple_repeat 2 68 0 942 77 0 0 chr13 75436015 75436132 -44308766 + AluSc SINE Alu 180 296 -13 1465 299 34 19 chr13 75437856 75438479 -44306419 + ERVL LTR ERVL 1917 2548 -3216 793 275 96 21 chr13 75438478 75438812 -44306086 + ERVL LTR ERVL 3131 3489 -2275 * 224 280 0 0 chr13 75438821 75438871 -44306027 + (CA)n Simple_repeat Simple_repeat 1 50 0 254 321 69 8 chr13 75438881 75439012 -44305886 + ERVL LTR ERVL 3483 3621 -2033 192 125 0 0 chr13 75439033 75439065 -44305833 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 350 303 101 28 chr13 75439284 75439502 -44305396 + ERVL LTR ERVL 3947 4180 -1584 1231 215 126 72 chr13 75439509 75439695 -44305203 + MLT1D LTR MaLR 1 176 -329 3294 127 39 0 chr13 75439695 75440240 -44304658 + L1MA4 LINE L1 5716 6281 -19 1231 215 126 72 chr13 75440240 75440522 -44304376 + MLT1D LTR MaLR 176 494 -11 298 328 47 32 chr13 75440720 75440973 -44303925 + ERVL LTR ERVL 4419 4675 -1089 601 301 34 55 chr13 75441139 75441578 -44303320 + ERVL LTR ERVL 4882 5311 -453 1041 219 67 158 chr13 75442476 75443237 -44301661 + MER21B LTR ERV1 23 714 -149 245 271 19 93 chr13 75443239 75443312 -44301586 + LTR67 LTR ERVL 442 506 -51 2305 120 21 12 chr13 75443312 75443645 -44301253 + MER1B DNA MER1_type 1 336 -1 245 271 19 93 chr13 75443645 75443678 -44301220 + LTR67 LTR ERVL 506 540 -17 575 275 79 57 chr13 75444027 75444431 -44300467 - MLT1J LTR MaLR -2 509 97 594 310 20 5 chr13 75446425 75446628 -44298270 - L3b LINE CR1 -88 1495 1290 413 287 64 56 chr13 75446790 75447163 -44297735 - L1ME LINE L1 -428 5693 5318 826 318 23 5 chr13 75447408 75447768 -44297130 - L2 LINE L2 -256 3057 2688 1283 13 7 0 chr13 75448155 75448308 -44296590 + (TTTC)n Simple_repeat Simple_repeat 3 156 0 2369 64 0 19 chr13 75448332 75448644 -44296254 - L1PA8 LINE L1 -1 6171 5866 690 173 0 0 chr13 75448644 75448754 -44296144 - AluJo SINE Alu -167 145 36 242 310 46 35 chr13 75449822 75449909 -44294989 - L2 LINE L2 -18 3295 3208 286 236 79 0 chr13 75452544 75452633 -44292265 - MIR SINE MIR -77 185 90 246 62 0 0 chr13 75453186 75453218 -44291680 + (T)n Simple_repeat Simple_repeat 1 32 0 350 359 48 6 chr13 75455136 75455303 -44289595 + MIR3 SINE MIR 30 203 -5 264 266 90 24 chr13 75455956 75456120 -44288778 + MIR SINE MIR 14 189 -62 2235 111 7 0 chr13 75456235 75456533 -44288365 - AluY SINE Alu -11 300 1 317 282 94 8 chr13 75458024 75458173 -44286725 + MIR SINE MIR 25 185 -59 261 241 0 17 chr13 75458527 75458585 -44286313 + CT-rich Low_complexity Low_complexity 5 61 0 414 0 0 0 chr13 75459726 75459772 -44285126 + (GA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr13 75461449 75461478 -44283420 + AT_rich Low_complexity Low_complexity 1 29 0 835 71 0 18 chr13 75461478 75461591 -44283307 - HY1 scRNA scRNA -1 111 1 478 268 79 53 chr13 75464585 75464813 -44280085 + MIR SINE MIR 6 239 -23 924 298 132 21 chr13 75464869 75465344 -44279554 + L2 LINE L2 2781 3307 -6 329 258 34 0 chr13 75466451 75466540 -44278358 - MER5A DNA MER1_type -89 100 9 558 205 16 0 chr13 75466563 75466685 -44278213 - L1PB4 LINE L1 -2 6154 6031 1945 116 0 0 chr13 75466785 75467043 -44277855 - AluSc SINE Alu -51 258 1 210 349 99 12 chr13 75467099 75467271 -44277627 + L2 LINE L2 2490 2676 -638 447 342 48 9 chr13 75467354 75467585 -44277313 + MIR SINE MIR 7 246 -16 1682 166 12 55 chr13 75468169 75468495 -44276403 - AluSx SINE Alu 0 312 1 428 285 29 62 chr13 75468598 75468761 -44276137 - MIR SINE MIR -63 145 4 180 0 0 0 chr13 75469442 75469462 -44275436 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 381 225 0 0 chr13 75469707 75469796 -44275102 + MER103 DNA DNA 25 113 -53 544 202 0 0 chr13 75470809 75470908 -44273990 - MER3 DNA MER1_type -105 104 6 641 332 32 16 chr13 75471419 75471729 -44273169 - L2 LINE L2 -297 3016 2702 398 287 9 0 chr13 75475387 75475495 -44269403 + MER94 DNA DNA 25 133 -1 205 333 67 11 chr13 75475564 75475654 -44269244 + L2 LINE L2 3152 3246 -26 28 29 0 0 chr13 75476911 75476946 -44267952 + AT_rich Low_complexity Low_complexity 1 35 0 204 329 162 19 chr13 75480053 75480445 -44264453 - L2 LINE L2 -195 3077 2628 675 218 19 6 chr13 75480457 75480613 -44264285 - LTR33 LTR ERVL -4 517 360 357 24 0 0 chr13 75480775 75480817 -44264081 + (TG)n Simple_repeat Simple_repeat 2 43 0 434 312 59 43 chr13 75480985 75481238 -44263660 - L2 LINE L2 -988 2326 2070 990 176 13 56 chr13 75481428 75481661 -44263237 - MLT1B LTR MaLR -167 223 1 233 190 52 0 chr13 75481981 75482039 -44262859 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 1882 144 62 43 chr13 75482661 75483029 -44261869 - THE1C LTR MaLR 0 375 1 544 104 0 0 chr13 75483271 75483348 -44261550 + MADE1 DNA Mariner 4 80 0 22 70 0 0 chr13 75483570 75483613 -44261285 + AT_rich Low_complexity Low_complexity 1 43 0 1542 205 92 31 chr13 75484012 75484402 -44260496 + MLT2D LTR ERVL 1 414 0 1030 116 58 0 chr13 75485191 75485381 -44259517 + L1PB3 LINE L1 5275 5475 -679 5525 117 28 2 chr13 75485385 75486977 -44257921 - L1PA13 LINE L1 0 6163 4537 2907 174 9 2 chr13 75487062 75487603 -44257295 - L1PA13 LINE L1 -1583 4563 4019 4389 111 14 10 chr13 75487603 75488294 -44256604 + L1PB3 LINE L1 5461 6154 0 494 106 0 35 chr13 75488294 75488378 -44256520 + L1MB8 LINE L1 6096 6177 -1 1117 181 0 11 chr13 75488444 75488632 -44256266 - AluJo SINE Alu -38 274 89 207 0 0 0 chr13 75489453 75489476 -44255422 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 287 322 44 0 chr13 75490201 75490291 -44254607 - MIR SINE MIR -11 251 158 201 253 51 51 chr13 75491249 75491328 -44253570 + L2 LINE L2 2689 2767 -547 284 282 214 0 chr13 75492036 75492153 -44252745 - L1ME3A LINE L1 -10 6160 6019 664 298 21 11 chr13 75492165 75492444 -44252454 - L1ME3A LINE L1 -577 5587 5306 993 257 134 47 chr13 75492493 75493315 -44251583 - L1ME3A LINE L1 -919 5227 4335 272 67 67 0 chr13 75493319 75493364 -44251534 - MLT2B1 LTR ERVL -7 513 466 325 237 21 0 chr13 75493365 75493606 -44251292 + (TA)n Simple_repeat Simple_repeat 1 246 0 436 289 16 8 chr13 75493621 75493742 -44251156 + MIR SINE MIR 92 213 -49 482 237 0 7 chr13 75493750 75493885 -44251013 + (CATATA)n Simple_repeat Simple_repeat 2 135 0 251 258 0 82 chr13 75493885 75493982 -44250916 + L1MC4 LINE L1 6614 6702 -1340 1578 223 63 20 chr13 75494036 75494481 -44250417 - MLT2B1 LTR ERVL -56 464 1 260 226 0 0 chr13 75494510 75494563 -44250335 - L1ME3A LINE L1 -1833 4313 4261 710 255 15 0 chr13 75495316 75495512 -44249386 + L1ME1 LINE L1 5663 5861 -305 2060 142 18 21 chr13 75495631 75495969 -44248929 + MER1B DNA MER1_type 1 337 0 1045 221 35 9 chr13 75496215 75496441 -44248457 - MIR SINE MIR -2 260 29 235 308 11 0 chr13 75496948 75497039 -44247859 - MIR SINE MIR 0 262 171 312 70 0 0 chr13 75498053 75498096 -44246802 + (TG)n Simple_repeat Simple_repeat 2 44 0 1013 292 11 4 chr13 75498737 75499103 -44245795 - MLT1I LTR MaLR -2 407 4 188 313 75 0 chr13 75499216 75499296 -44245602 + L2 LINE L2 1764 1849 -1465 243 297 40 30 chr13 75499306 75499407 -44245491 + L2 LINE L2 2861 2962 -352 437 328 61 26 chr13 75500620 75500849 -44244049 + MIR SINE MIR 20 256 -6 1625 112 0 9 chr13 75501858 75502090 -44242808 - MER30 DNA MER1_type 0 230 1 398 286 17 8 chr13 75502435 75502554 -44242344 + MIR SINE MIR 126 245 -17 246 276 102 31 chr13 75503933 75504031 -44240867 - L2 LINE L2 -219 3053 2949 541 200 103 46 chr13 75504340 75504535 -44240363 + L1MC5 LINE L1 7722 7927 -34 324 0 0 0 chr13 75504654 75504690 -44240208 + (CA)n Simple_repeat Simple_repeat 2 37 0 298 254 254 0 chr13 75505130 75505244 -44239654 + MIR SINE MIR 46 188 -74 * 528 270 107 6 chr13 75505216 75505394 -44239504 + L2 LINE L2 1765 1960 -1354 621 231 54 126 chr13 75505399 75505772 -44239126 + L2 LINE L2 2968 3313 0 190 204 102 20 chr13 75505783 75505832 -44239066 + L2 LINE L2 3201 3253 -19 613 308 126 41 chr13 75506049 75506390 -44238508 - L2 LINE L2 0 3272 2903 2248 93 10 0 chr13 75506493 75506784 -44238114 - AluSp SINE Alu -19 294 1 306 266 113 47 chr13 75507706 75508072 -44236826 + MLT1J LTR MaLR 16 480 -31 25 31 0 0 chr13 75508320 75508352 -44236546 + AT_rich Low_complexity Low_complexity 1 32 0 1802 233 91 63 chr13 75508458 75509030 -44235868 + MLT1E LTR MaLR 3 590 -3 255 125 0 0 chr13 75509295 75509335 -44235563 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 308 336 59 66 chr13 75510335 75510591 -44234307 + L2 LINE L2 2992 3245 -27 237 327 117 19 chr13 75511029 75511191 -44233707 - MIR SINE MIR -6 256 79 13965 211 32 20 chr13 75511544 75515041 -44229857 - L1PB4 LINE L1 -15 6843 3192 2620 52 0 0 chr13 75515041 75515347 -44229551 + AluY SINE Alu 1 306 -5 13965 211 32 20 chr13 75515347 75517862 -44227036 - L1PB4 LINE L1 -3666 3192 710 28015 130 19 37 chr13 75518595 75525022 -44219876 + L1PA8 LINE L1 10 6481 -6 232 352 76 62 chr13 75525830 75525975 -44218923 + L2 LINE L2 2867 3013 -300 470 137 137 0 chr13 75525980 75526075 -44218823 + L2 LINE L2 3202 3309 -4 209 231 58 0 chr13 75526644 75526696 -44218202 + MIR SINE MIR 164 218 -44 2192 116 3 0 chr13 75526707 75527010 -44217888 + AluSg1 SINE Alu 1 304 -5 415 275 58 8 chr13 75527407 75527527 -44217371 + MIR SINE MIR 67 192 -70 190 273 45 68 chr13 75528030 75528162 -44216736 + MIR SINE MIR 121 249 -13 2797 214 8 0 chr13 75528963 75529579 -44215319 - L1PA16 LINE L1 -826 5320 4700 5432 147 2 0 chr13 75529579 75530437 -44214461 + L1PA16 LINE L1 5306 6165 -1 657 255 57 87 chr13 75530551 75531203 -44213695 - L1MC5 LINE L1 -34 7927 7296 594 250 37 48 chr13 75531319 75531591 -44213307 - L1MC5 LINE L1 -717 7244 6976 2514 145 7 17 chr13 75531601 75532008 -44212890 + MSTA LTR MaLR 1 403 -25 4871 174 97 7 chr13 75532071 75532882 -44212016 - L1MC3 LINE L1 -28 7757 6838 189 0 0 0 chr13 75532882 75532903 -44211995 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4871 174 97 7 chr13 75532903 75533091 -44211807 - L1MC3 LINE L1 -947 6838 6668 474 293 97 56 chr13 75533093 75533437 -44211461 - L1MC4 LINE L1 -886 7007 6561 261 233 11 22 chr13 75533501 75533591 -44211307 + (TA)n Simple_repeat Simple_repeat 1 89 0 786 242 22 35 chr13 75534041 75534272 -44210626 - L1MC4 LINE L1 -1911 5897 5670 225 310 62 26 chr13 75534290 75534403 -44210495 + MIR SINE MIR 124 240 -22 207 0 0 0 chr13 75534497 75534520 -44210378 + (TG)n Simple_repeat Simple_repeat 2 24 0 190 416 0 0 chr13 75534788 75534877 -44210021 - L2 LINE L2 -541 2773 2685 486 347 125 30 chr13 75534965 75535313 -44209585 + L2 LINE L2 1989 2303 -1011 186 43 0 0 chr13 75535313 75535336 -44209562 + (TCTCC)n Simple_repeat Simple_repeat 3 25 0 486 347 125 30 chr13 75535336 75535642 -44209256 + L2 LINE L2 2303 2705 -609 459 359 24 5 chr13 75536244 75536450 -44208448 - MIR SINE MIR -5 257 48 1335 206 54 90 chr13 75536572 75536891 -44208007 + MER39 LTR ERV1 1 330 -377 1920 157 0 0 chr13 75536891 75537184 -44207714 + AluSx SINE Alu 1 293 -19 1335 206 54 90 chr13 75537184 75537372 -44207526 + MER39 LTR ERV1 330 707 0 194 314 0 20 chr13 75537656 75537707 -44207191 - L2 LINE L2 -3 3269 3220 1559 166 36 50 chr13 75538578 75538879 -44206019 + AluJo SINE Alu 15 311 -1 588 246 72 7 chr13 75538918 75539056 -44205842 - L2 LINE L2 0 3313 3167 194 333 0 0 chr13 75541156 75541216 -44203682 + L2 LINE L2 1893 1952 -1362 565 272 56 48 chr13 75541228 75541555 -44203343 - MLT1J2 LTR MaLR -25 425 56 586 335 31 38 chr13 75541793 75542086 -44202812 + L2 LINE L2 2196 2486 -828 2659 156 51 74 chr13 75542256 75542877 -44202021 + MLT2B3 LTR ERVL 1 515 0 1677 238 46 28 chr13 75542987 75543419 -44201479 - MLT2B1 LTR ERVL -71 449 10 234 324 50 0 chr13 75543428 75543610 -44201288 - L1ME LINE L1 -253 5868 5678 575 308 73 75 chr13 75543674 75544183 -44200715 + MLT1K LTR MaLR 67 574 -14 23 86 0 0 chr13 75544230 75544288 -44200610 + AT_rich Low_complexity Low_complexity 1 58 0 423 313 0 0 chr13 75544723 75544838 -44200060 + MER94 DNA DNA 16 130 -4 * 653 286 60 20 chr13 75544829 75545158 -44199740 - MLT1J1 LTR MaLR -50 396 11 540 321 60 14 chr13 75545449 75545667 -44199231 + MIR SINE MIR 20 247 -15 21 0 0 0 chr13 75545986 75546007 -44198891 + AT_rich Low_complexity Low_complexity 1 21 0 1599 161 14 25 chr13 75546534 75546819 -44198079 - AluJo SINE Alu -30 282 1 234 0 0 0 chr13 75548805 75548831 -44196067 + (TG)n Simple_repeat Simple_repeat 2 27 0 2221 131 0 0 chr13 75549579 75549885 -44195013 - AluSx SINE Alu -6 306 1 247 187 83 77 chr13 75550719 75550746 -44194152 + L1M4c LINE L1 2397 2422 -3960 2276 65 55 3 chr13 75550746 75551037 -44193861 + AluY SINE Alu 1 306 -5 247 187 83 77 chr13 75551037 75551129 -44193769 + L1M4c LINE L1 2422 2517 -3865 188 279 13 76 chr13 75551664 75551743 -44193155 + L2 LINE L2 2517 2590 -724 1400 135 45 0 chr13 75552149 75552371 -44192527 - Tigger3(Golem) DNA MER2_type -2 3027 2796 4946 103 32 13 chr13 75552382 75553169 -44191729 + LOR1-int LTR ERV1 4241 5042 -3078 389 20 0 20 chr13 75553207 75553258 -44191640 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 14860 191 26 8 chr13 75553311 75554144 -44190754 - L1PB1 LINE L1 -1 6866 6049 198 0 0 0 chr13 75554144 75554166 -44190732 + (TTA)n Simple_repeat Simple_repeat 2 23 0 14860 191 26 8 chr13 75554166 75556158 -44188740 - L1PB1 LINE L1 -818 6049 4093 2287 110 25 25 chr13 75556158 75556522 -44188376 - THE1B LTR MaLR 0 364 1 11069 98 35 1 chr13 75556522 75558049 -44186849 - THE1B-int LTR MaLR 0 1580 1 2011 133 75 20 chr13 75558049 75558394 -44186504 - THE1B LTR MaLR 0 364 1 14860 191 26 8 chr13 75558394 75561003 -44183895 - L1PB1 LINE L1 -2773 4094 1312 2455 128 124 21 chr13 75561006 75561481 -44183417 - L1PB1 LINE L1 -5704 1159 636 1072 172 5 0 chr13 75561483 75561681 -44183217 - L1PB1 LINE L1 -6663 200 2 507 181 79 71 chr13 75561694 75561821 -44183077 - Tigger3(Golem) DNA MER2_type -451 2578 25 269 183 17 0 chr13 75561824 75561884 -44183014 + MER7A DNA MER2_type 46 104 -242 940 276 45 16 chr13 75562032 75562456 -44182442 - L1MCa LINE L1 -4114 3008 2573 3150 102 29 8 chr13 75562522 75563004 -44181894 - L1PA10 LINE L1 0 6168 5677 4249 236 112 49 chr13 75563008 75564613 -44180285 - L1MC4a LINE L1 -7 7801 6096 2296 104 44 16 chr13 75565152 75565517 -44179381 - THE1C LTR MaLR 0 375 1 292 270 81 16 chr13 75565535 75565720 -44179178 - L1MC4a LINE L1 -1687 6121 5925 2293 171 37 14 chr13 75565729 75566370 -44178528 - L1MB8 LINE L1 -5 6173 5458 1394 262 75 36 chr13 75566363 75566951 -44177947 - L1MC4a LINE L1 -1862 5946 5336 * 1050 256 51 6 chr13 75566955 75567310 -44177588 - L1MCa LINE L1 -4536 2586 2028 357 323 100 32 chr13 75567338 75567679 -44177219 - L1MCa LINE L1 -6013 410 47 276 256 125 62 chr13 75569371 75569551 -44175347 - MIR SINE MIR -66 142 3 180 0 0 0 chr13 75569658 75569678 -44175220 + (T)n Simple_repeat Simple_repeat 1 20 0 1334 159 99 46 chr13 75569927 75570210 -44174688 - AluJo SINE Alu -14 298 1 217 266 128 37 chr13 75570215 75570324 -44174574 - L2 LINE L2 0 3313 3195 5053 209 60 32 chr13 75570690 75572061 -44172837 + Charlie1a DNA MER1_type 5 1414 -41 1013 271 13 17 chr13 75572062 75572361 -44172537 - L1MD3 LINE L1 -12 7983 7686 296 217 17 0 chr13 75572361 75572421 -44172477 + Charlie1a DNA MER1_type 1395 1455 0 200 170 38 0 chr13 75572836 75572889 -44172009 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 25 31 0 0 chr13 75573112 75573144 -44171754 + AT_rich Low_complexity Low_complexity 1 32 0 2420 108 8 8 chr13 75573781 75574134 -44170764 - THE1A LTR MaLR 0 355 3 11427 92 12 4 chr13 75574136 75575703 -44169195 - THE1A-int LTR MaLR 0 1580 1 2390 104 8 11 chr13 75575703 75576059 -44168839 - THE1A LTR MaLR 0 355 1 370 357 70 12 chr13 75576270 75576441 -44168457 - L2 LINE L2 -1 3271 3091 574 133 9 0 chr13 75577960 75578065 -44166833 - L1MA8 LINE L1 -3 6288 6183 21 57 0 0 chr13 75578367 75578402 -44166496 + AT_rich Low_complexity Low_complexity 1 35 0 2005 141 141 8 chr13 75580244 75580620 -44164278 + MSTA LTR MaLR 1 426 -2 3677 142 12 28 chr13 75581610 75582263 -44162635 + MER73 LTR ERVL 2 644 0 203 0 37 0 chr13 75583369 75583396 -44161502 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 262 297 42 59 chr13 75583837 75583955 -44160943 - L3 LINE CR1 -21 1556 1441 2502 114 11 3 chr13 75584005 75584366 -44160532 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr13 75584981 75585007 -44159891 + AT_rich Low_complexity Low_complexity 1 26 0 6489 192 176 24 chr13 75585596 75587120 -44157778 + MER52A LTR ERV1 1 1755 0 436 245 39 0 chr13 75587780 75587882 -44157016 - MIR SINE MIR -29 233 128 910 245 24 9 chr13 75590123 75590335 -44154563 + MER58A DNA MER1_type 8 222 -2 412 119 0 24 chr13 75590830 75590914 -44153984 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1008 86 0 0 chr13 75591570 75591710 -44153188 + (TTCC)n Simple_repeat Simple_repeat 1 140 0 1792 142 15 0 chr13 75591710 75591984 -44152914 - AluJb SINE Alu -34 278 1 23 0 0 0 chr13 75592490 75592513 -44152385 + AT_rich Low_complexity Low_complexity 1 23 0 240 161 0 0 chr13 75592954 75593016 -44151882 + GA-rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chr13 75593574 75593598 -44151300 + AT_rich Low_complexity Low_complexity 1 24 0 299 173 37 37 chr13 75594374 75594455 -44150443 - MIR SINE MIR -71 191 111 182 333 20 0 chr13 75594898 75594949 -44149949 - L2 LINE L2 -22 3250 3199 203 286 107 12 chr13 75595112 75595196 -44149702 - L2 LINE L2 -236 3036 2945 231 365 185 5 chr13 75595219 75595441 -44149457 - L2 LINE L2 -496 2818 2557 2655 116 8 106 chr13 75596568 75597086 -44147812 - MLT1C LTR MaLR 0 467 1 1028 162 0 6 chr13 75597326 75597493 -44147405 - FRAM SINE Alu -14 162 1 280 282 104 79 chr13 75597644 75598251 -44146647 - L1ME4a LINE L1 -182 5939 5318 812 186 0 55 chr13 75598391 75598574 -44146324 - pTR5 LTR ERV1 -1524 914 742 42825 31 22 3 chr13 75598617 75604645 -44140253 + L1HS LINE L1 7 6155 0 25 31 0 0 chr13 75604759 75604791 -44140107 + AT_rich Low_complexity Low_complexity 1 32 0 1309 257 36 17 chr13 75605333 75605810 -44139088 + MER97c DNA MER1_type? 16 545 -545 551 253 29 70 chr13 75606236 75606477 -44138421 + MER97c DNA MER1_type? 855 1085 -5 444 272 83 67 chr13 75607089 75607269 -44137629 - MIR3 SINE MIR -5 203 21 194 239 136 0 chr13 75607320 75607408 -44137490 + MIR SINE MIR 154 253 -9 22 0 0 0 chr13 75607684 75607706 -44137192 + AT_rich Low_complexity Low_complexity 1 22 0 415 326 94 0 chr13 75609611 75609792 -44135106 - MIR SINE MIR -30 232 35 683 285 64 61 chr13 75610189 75610564 -44134334 - MLT1J LTR MaLR -134 377 2 1821 257 59 4 chr13 75611741 75612200 -44132698 - LTR40a LTR ERVL -35 484 1 24 0 0 0 chr13 75612272 75612296 -44132602 + AT_rich Low_complexity Low_complexity 1 24 0 743 257 38 24 chr13 75612344 75612638 -44132260 - L1MC/D LINE L1 -351 5770 5522 4240 205 33 34 chr13 75613172 75614755 -44130143 - L1MA9 LINE L1 -34 6278 4682 369 75 0 0 chr13 75614865 75614918 -44129980 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 1455 117 36 0 chr13 75615264 75615486 -44129412 - MER30 DNA MER1_type 0 230 1 302 389 79 0 chr13 75615614 75615753 -44129145 - MIR3 SINE MIR -29 179 30 1405 147 9 110 chr13 75618544 75618746 -44126152 - L1PB4 LINE L1 -1 6155 5997 2093 128 3 0 chr13 75618746 75619035 -44125863 - AluSx SINE Alu -22 290 1 1405 147 9 110 chr13 75619035 75619158 -44125740 - L1PB4 LINE L1 -159 5997 5863 658 230 86 0 chr13 75619750 75619889 -44125009 - FRAM SINE Alu -25 151 1 228 250 0 33 chr13 75620499 75620559 -44124339 + CT-rich Low_complexity Low_complexity 3 60 0 2969 215 77 8 chr13 75620578 75621335 -44123563 - L1MC4a LINE L1 0 7808 7000 2282 114 38 19 chr13 75621427 75621795 -44123103 - THE1C LTR MaLR 0 375 1 192 367 137 7 chr13 75624101 75624240 -44120658 + L2 LINE L2 3101 3257 -15 4396 241 100 19 chr13 75625038 75625275 -44119623 + L1M4 LINE L1 16 232 -6310 1753 135 106 12 chr13 75625275 75625616 -44119282 - THE1C LTR MaLR 0 375 3 4396 241 100 19 chr13 75625616 75626704 -44118194 + L1M4 LINE L1 232 1456 -5086 2261 114 0 0 chr13 75626704 75627010 -44117888 + AluSc SINE Alu 1 306 -3 4396 241 100 19 chr13 75627010 75627042 -44117856 + L1M4 LINE L1 1456 1484 -5058 * 5288 199 44 21 chr13 75627041 75628363 -44116535 + L1MC2 LINE L1 3995 5372 -972 1979 101 0 0 chr13 75628363 75628639 -44116259 + L1PA8A LINE L1 5854 6129 -2 5288 199 44 21 chr13 75628639 75629628 -44115270 + L1MC2 LINE L1 5372 6336 -8 623 192 47 17 chr13 75629630 75629802 -44115096 + L1M4 LINE L1 1468 1644 -4898 3731 199 35 12 chr13 75629819 75630627 -44114271 + L1MB8 LINE L1 5347 6172 -6 280 252 19 0 chr13 75630732 75630839 -44114059 + CT-rich Low_complexity Low_complexity 6 114 0 23 78 0 0 chr13 75631005 75631056 -44113842 + AT_rich Low_complexity Low_complexity 1 51 0 1940 135 3 10 chr13 75631253 75631556 -44113342 + AluSg SINE Alu 1 301 -9 187 294 0 73 chr13 75631642 75631710 -44113188 - L3 LINE CR1 -80 1497 1435 561 268 134 5 chr13 75631872 75632066 -44112832 + MIR SINE MIR 43 261 -1 439 242 88 57 chr13 75632555 75632749 -44112149 + MIR SINE MIR 44 243 -19 2201 92 7 0 chr13 75633688 75633996 -44110902 + AluSx SINE Alu 1 310 0 2261 153 35 24 chr13 75634387 75634811 -44110087 + Tigger2a DNA MER2_type 5 433 -1 750 265 45 113 chr13 75635314 75635896 -44109002 + MER34 LTR ERV1 1 542 0 1295 209 8 0 chr13 75636197 75636446 -44108452 - L1MCa LINE L1 -6150 276 26 807 251 17 0 chr13 75638048 75638223 -44106675 + MER5A DNA MER1_type 1 178 -11 1025 144 65 5 chr13 75638240 75638441 -44106457 - MER20 DNA MER1_type -3 216 4 547 266 169 0 chr13 75638536 75638690 -44106208 - MER5A DNA MER1_type 0 189 10 771 282 56 58 chr13 75639802 75640249 -44104649 + MLT1J1 LTR MaLR 1 446 0 185 283 224 32 chr13 75640873 75641092 -44103806 - L2 LINE L2 -1291 2023 1763 270 206 0 0 chr13 75641959 75642022 -44102876 + (CAATT)n Simple_repeat Simple_repeat 1 63 0 1873 210 43 30 chr13 75642517 75642978 -44101920 - MLT1C LTR MaLR 0 467 1 573 312 66 35 chr13 75643253 75643703 -44101195 - MLT1J LTR MaLR -26 424 1 292 257 147 0 chr13 75644323 75644432 -44100466 + L1ME3A LINE L1 4015 4139 -2007 2139 266 91 22 chr13 75644580 75645698 -44099200 + L1ME3A LINE L1 4192 5386 -760 1954 241 36 79 chr13 75645707 75646586 -44098312 + L1ME3A LINE L1 5358 6170 0 1356 148 151 48 chr13 75647139 75647450 -44097448 - MER2 DNA MER2_type -1 343 1 2741 272 56 15 chr13 75647787 75648541 -44096357 - MER21B LTR ERV1 -60 803 19 445 211 0 0 chr13 75648565 75648641 -44096257 - MER21B LTR ERV1 -776 87 12 23 0 0 0 chr13 75649069 75649092 -44095806 + AT_rich Low_complexity Low_complexity 1 23 0 250 327 109 10 chr13 75650396 75650497 -44094401 - MIR3 SINE MIR -83 125 15 2106 213 83 12 chr13 75650763 75650793 -44094105 - MLT2B1 LTR ERVL -3 517 491 315 49 0 0 chr13 75650793 75650834 -44094064 + (TG)n Simple_repeat Simple_repeat 2 42 0 2106 213 83 12 chr13 75650834 75651286 -44093612 - MLT2B1 LTR ERVL -29 491 1 2025 139 60 31 chr13 75651318 75651670 -44093228 - THE1B LTR MaLR -2 362 1 4582 177 86 12 chr13 75651944 75652870 -44092028 + Tigger6a DNA MER2_type 1 1009 -588 180 0 0 0 chr13 75652870 75652890 -44092008 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4582 177 86 12 chr13 75652890 75652970 -44091928 + Tigger6a DNA MER2_type 1009 1082 -1 294 372 73 11 chr13 75652971 75653162 -44091736 + L2 LINE L2 3069 3271 -1 1280 197 211 11 chr13 75653321 75653701 -44091197 - MSTB2 LTR MaLR 0 457 2 344 125 0 0 chr13 75654386 75654442 -44090456 - MER5C DNA MER1_type -200 124 69 204 349 0 75 chr13 75654508 75654642 -44090256 + L2 LINE L2 728 3272 0 233 188 31 0 chr13 75654642 75654706 -44090192 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 1324 178 33 131 chr13 75655015 75655289 -44089609 + Tigger7 DNA MER2_type 109 408 -2079 189 0 0 0 chr13 75655289 75655310 -44089588 + (GA)n Simple_repeat Simple_repeat 2 22 0 1324 178 33 131 chr13 75655310 75655547 -44089351 + Tigger7 DNA MER2_type 408 2486 -1 423 294 114 22 chr13 75657338 75657566 -44087332 - L3 LINE CR1 -2 1575 1327 780 262 34 42 chr13 75657858 75658121 -44086777 + MIR SINE MIR 2 262 0 27 73 0 0 chr13 75658402 75658457 -44086441 + AT_rich Low_complexity Low_complexity 1 55 0 13218 78 4 16 chr13 75660362 75662997 -44081901 - L1PA7 LINE L1 -8 6146 3533 826 185 128 5 chr13 75663085 75663280 -44081618 - MER20 DNA MER1_type 0 219 1 313 187 49 73 chr13 75663494 75663617 -44081281 - MLT1J1 LTR MaLR -52 394 275 2216 220 42 46 chr13 75663923 75664490 -44080408 - L1ME1 LINE L1 -64 6496 5931 1261 225 16 49 chr13 75664490 75664876 -44080022 - MLT1A2 LTR MaLR 0 374 2 2216 220 42 46 chr13 75664876 75664957 -44079941 - L1ME1 LINE L1 -629 5931 5851 1347 30 0 0 chr13 75664952 75665121 -44079777 - L1P LINE L1 -2999 3147 2979 * 17174 51 2 0 chr13 75665122 75666630 -44078268 + L1PA5 LINE L1 3201 4709 -1445 2471 65 7 3 chr13 75666630 75666940 -44077958 + AluY SINE Alu 1 311 0 17174 51 2 0 chr13 75666940 75668389 -44076509 + L1PA5 LINE L1 4709 6153 -1 304 252 46 40 chr13 75668415 75668566 -44076332 + L1ME3A LINE L1 6019 6170 0 695 218 31 74 chr13 75668588 75668973 -44075925 - L1ME1 LINE L1 -744 5796 5326 1268 234 17 59 chr13 75668975 75669091 -44075807 + MLT1A2 LTR MaLR 35 154 -220 1892 144 21 0 chr13 75669091 75669375 -44075523 - AluSx SINE Alu -22 290 1 1268 234 17 59 chr13 75669375 75669613 -44075285 + MLT1A2 LTR MaLR 154 374 0 3049 232 52 46 chr13 75669613 75670476 -44074422 - L1ME1 LINE L1 -1210 5330 4474 1514 213 108 48 chr13 75670476 75670950 -44073948 - MLT1D LTR MaLR -3 502 1 3049 232 52 46 chr13 75670950 75672307 -44072591 - L1ME1 LINE L1 -2066 4474 2541 1450 168 12 12 chr13 75672307 75672574 -44072324 - AluJo SINE Alu 0 305 39 3049 232 52 46 chr13 75672574 75672731 -44072167 - L1ME1 LINE L1 -3999 2541 2386 237 377 32 7 chr13 75673421 75673575 -44071323 - L1ME1 LINE L1 -6362 178 21 1923 225 21 0 chr13 75674234 75674607 -44070291 - MER70A LTR ERVL -2 470 90 824 195 6 37 chr13 75674606 75674770 -44070128 - MER70B LTR ERVL -419 159 1 * 257 226 65 0 chr13 75674785 75674847 -44070051 - MIR SINE MIR -108 154 89 3283 180 31 25 chr13 75675286 75675970 -44068928 + MER76 LTR ERV 1 688 0 284 48 24 0 chr13 75678056 75678098 -44066800 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2259 106 10 3 chr13 75679624 75679935 -44064963 + AluSq SINE Alu 1 313 0 402 315 60 32 chr13 75680022 75680238 -44064660 + MLT1H LTR MaLR 115 336 -213 624 137 0 26 chr13 75680361 75680478 -44064420 + L1MA6 LINE L1 6182 6295 -5 275 321 88 19 chr13 75681074 75681233 -44063665 + MIR SINE MIR 6 175 -87 1999 137 0 0 chr13 75682243 75682536 -44062362 - AluSq SINE Alu -20 293 1 310 247 97 0 chr13 75683423 75683516 -44061382 - MLT1J1 LTR MaLR 0 446 345 284 188 129 12 chr13 75683760 75683845 -44061053 - L1ME LINE L1 -4579 1501 1407 2200 266 100 33 chr13 75683918 75685244 -44059654 - L1ME LINE L1 -4679 1401 4 707 287 132 37 chr13 75685401 75685802 -44059096 - MLT1J2 LTR MaLR 0 450 12 1828 142 65 34 chr13 75685802 75686155 -44058743 + THE1B LTR MaLR 1 364 0 1558 148 148 22 chr13 75687365 75687689 -44057209 + MLT1A1 LTR MaLR 1 365 0 510 336 43 5 chr13 75688224 75688432 -44056466 + MIR SINE MIR 39 254 -8 219 293 0 0 chr13 75689022 75689080 -44055818 - MIR SINE MIR -65 197 140 2021 133 16 68 chr13 75689340 75689707 -44055191 - MER7A DNA MER2_type 0 346 1 1307 148 5 28 chr13 75689759 75689975 -44054923 + AluJb SINE Alu 91 301 -11 258 280 13 0 chr13 75690248 75690323 -44054575 + MIR SINE MIR 86 161 -101 185 159 23 0 chr13 75690442 75690486 -44054412 + CT-rich Low_complexity Low_complexity 3 47 0 2661 135 17 7 chr13 75692188 75692610 -44052288 - MSTA LTR MaLR -2 426 1 930 175 0 12 chr13 75692920 75693080 -44051818 + FAM SINE Alu 4 162 -8 2257 111 3 10 chr13 75693080 75693386 -44051512 - AluSq SINE Alu -9 304 1 1757 159 10 17 chr13 75693430 75693720 -44051178 + AluJb SINE Alu 1 288 -24 318 361 26 36 chr13 75694207 75694401 -44050497 + L2 LINE L2 2934 3125 -147 1728 193 48 0 chr13 75695895 75696226 -44048672 - MER7A DNA MER2_type 0 346 2 365 291 51 19 chr13 75696722 75696880 -44048018 - L1M4 LINE L1 -1701 4445 4283 572 311 131 61 chr13 75697253 75697696 -44047202 - HAL1 LINE L1 -919 1588 1089 2028 148 0 0 chr13 75697696 75698006 -44046892 - AluSx SINE Alu -2 310 1 572 311 131 61 chr13 75698006 75698172 -44046726 - HAL1 LINE L1 -1418 1089 936 268 333 152 18 chr13 75698570 75698853 -44046045 - L2 LINE L2 -243 3070 2700 290 182 78 13 chr13 75699835 75699912 -44044986 - MIR SINE MIR -35 227 146 294 348 193 0 chr13 75699950 75700131 -44044767 - MIR SINE MIR -1 261 46 629 337 75 18 chr13 75700396 75700731 -44044167 + LTR33 LTR ERVL 115 468 -53 21 0 0 0 chr13 75700772 75700793 -44044105 + AT_rich Low_complexity Low_complexity 1 21 0 233 300 0 14 chr13 75701983 75702053 -44042845 + MLT1L LTR MaLR 4 72 -543 29 0 0 25 chr13 75703791 75703809 -44041089 + AT_rich Low_complexity Low_complexity 1 18 -21 2063 126 3 3 chr13 75703809 75704110 -44040788 - AluSq SINE Alu -12 301 1 29 0 0 25 chr13 75704110 75704131 -44040767 + AT_rich Low_complexity Low_complexity 18 39 0 245 303 0 0 chr13 75704310 75704376 -44040522 + MLT1K LTR MaLR 521 586 -2 246 246 0 16 chr13 75705091 75705176 -44039722 + (TATATG)n Simple_repeat Simple_repeat 1 83 0 261 0 0 0 chr13 75705176 75705205 -44039693 + (CA)n Simple_repeat Simple_repeat 2 30 0 2035 220 31 47 chr13 75705324 75705960 -44038938 - L1MC4a LINE L1 -1919 5889 5264 21 0 0 0 chr13 75706244 75706265 -44038633 + AT_rich Low_complexity Low_complexity 1 21 0 244 220 140 10 chr13 75706303 75706403 -44038495 - L1MC4a LINE L1 -1299 4847 4735 264 248 18 35 chr13 75706568 75706681 -44038217 - L1P LINE L1 -3757 2389 2279 241 82 41 0 chr13 75706773 75706822 -44038076 + (TA)n Simple_repeat Simple_repeat 2 52 0 21 82 0 0 chr13 75706878 75706927 -44037971 + AT_rich Low_complexity Low_complexity 1 49 0 406 290 88 111 chr13 75707373 75708059 -44036839 - HAL1 LINE L1 -773 1734 1065 2333 66 0 66 chr13 75708092 75708411 -44036487 - AluY SINE Alu -9 302 5 41090 33 39 1 chr13 75708739 75714678 -44030220 + L1PA3 LINE L1 1 6155 0 25 51 0 0 chr13 75714749 75714788 -44030110 + AT_rich Low_complexity Low_complexity 1 39 0 21 89 0 0 chr13 75715015 75715071 -44029827 + AT_rich Low_complexity Low_complexity 1 56 0 267 289 132 53 chr13 75715249 75715363 -44029535 + L2 LINE L2 3150 3272 0 26 0 0 0 chr13 75715961 75715987 -44028911 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 75716199 75716221 -44028677 + AT_rich Low_complexity Low_complexity 1 22 0 2387 35 41 0 chr13 75717838 75718128 -44026770 + AluY SINE Alu 1 302 -9 416 250 179 22 chr13 75718203 75718356 -44026542 - MIR SINE MIR -3 259 71 1514 156 164 29 chr13 75718356 75718703 -44026195 - MSTD LTR MaLR -2 394 1 416 250 179 22 chr13 75718703 75718733 -44026165 - MIR SINE MIR -191 71 47 26 30 0 0 chr13 75718893 75718926 -44025972 + AT_rich Low_complexity Low_complexity 1 33 0 1496 190 0 52 chr13 75719803 75720130 -44024768 + AluJo SINE Alu 2 311 -1 279 0 0 0 chr13 75720130 75720161 -44024737 + (TA)n Simple_repeat Simple_repeat 1 31 0 290 136 27 64 chr13 75720240 75720350 -44024548 + (TATAA)n Simple_repeat Simple_repeat 5 110 0 * 395 182 40 14 chr13 75720329 75720477 -44024421 + (TA)n Simple_repeat Simple_repeat 1 152 0 758 147 93 0 chr13 75720589 75720718 -44024180 + MSTC LTR MaLR 1 141 -287 844 250 14 9 chr13 75720772 75720988 -44023910 + MER97b DNA MER1_type? 1 217 -836 243 222 19 0 chr13 75720983 75721037 -44023861 - MER97b DNA MER1_type? -998 55 1 * 26 0 0 0 chr13 75721667 75721693 -44023205 + AT_rich Low_complexity Low_complexity 1 26 0 30 27 0 0 chr13 75721774 75721811 -44023087 + AT_rich Low_complexity Low_complexity 1 37 0 2185 153 45 29 chr13 75721857 75722276 -44022622 + MSTC LTR MaLR 1 426 -2 2354 154 32 0 chr13 75722392 75722833 -44022065 + L1MA5 LINE L1 5844 6298 -2 995 167 0 28 chr13 75722841 75723021 -44021877 + FRAM SINE Alu 2 176 0 920 128 75 114 chr13 75724242 75724469 -44020429 + MER30 DNA MER1_type 5 222 -8 245 158 0 0 chr13 75724816 75724854 -44020044 - MER2 DNA MER2_type -28 317 280 1193 166 19 0 chr13 75724903 75725108 -44019790 - MER2 DNA MER2_type -135 210 2 246 32 0 0 chr13 75725565 75725596 -44019302 + (TTG)n Simple_repeat Simple_repeat 3 33 0 216 191 0 0 chr13 75725741 75725783 -44019115 + (CATA)n Simple_repeat Simple_repeat 3 44 0 327 25 0 0 chr13 75726066 75726106 -44018792 + (CA)n Simple_repeat Simple_repeat 1 40 0 34 0 0 0 chr13 75726386 75726420 -44018478 + AT_rich Low_complexity Low_complexity 1 34 0 337 310 78 9 chr13 75728771 75728887 -44016011 + MIR SINE MIR 25 148 -114 256 262 65 56 chr13 75729817 75729924 -44014974 - MLT1F1 LTR MaLR -399 168 61 3892 103 69 0 chr13 75730160 75730754 -44014144 + LTR24C LTR ERV1 1 635 0 226 125 42 21 chr13 75731216 75731264 -44013634 + MER5B DNA MER1_type 53 101 -77 833 350 65 23 chr13 75731293 75731773 -44013125 + L2 LINE L2 831 1330 -1984 1265 246 62 38 chr13 75731778 75732229 -44012669 + MLT1C LTR MaLR 6 467 0 302 204 225 21 chr13 75732253 75732444 -44012454 + L2 LINE L2 1324 1553 -1761 520 83 14 0 chr13 75732469 75732541 -44012357 - MADE1 DNA Mariner -7 73 1 858 304 24 73 chr13 75732552 75732963 -44011935 + L2 LINE L2 1603 1993 -1321 295 204 102 20 chr13 75733859 75733957 -44010941 + LTR16C LTR ERVL 385 490 -1 1035 161 71 38 chr13 75734014 75734225 -44010673 + MLT1C LTR MaLR 26 243 -224 494 201 82 15 chr13 75734225 75734359 -44010539 + MLT1A2 LTR MaLR 1 143 -247 219 69 0 0 chr13 75734589 75734618 -44010280 + (TC)n Simple_repeat Simple_repeat 1 29 0 887 210 5 16 chr13 75734642 75734828 -44010070 + MLT1A2 LTR MaLR 187 370 -4 1428 150 9 0 chr13 75734833 75735059 -44009839 + MLT1C LTR MaLR 240 467 0 372 317 19 77 chr13 75735557 75735765 -44009133 + MIR3 SINE MIR 13 208 0 728 172 53 7 chr13 75736566 75736749 -44008149 + L1MB5 LINE L1 6008 6197 0 240 213 5 179 chr13 75736997 75737204 -44007694 - L1MC5 LINE L1 -51 7910 7740 274 280 36 71 chr13 75737386 75737554 -44007344 - L1MC5 LINE L1 -399 7562 7401 336 301 98 10 chr13 75737569 75737762 -44007136 - L1MC4a LINE L1 -1035 6773 6564 298 325 26 8 chr13 75738029 75738146 -44006752 + L2 LINE L2 2601 2719 -595 239 316 40 80 chr13 75742191 75742466 -44002432 - L2 LINE L2 -1004 2310 2047 539 260 102 41 chr13 75742526 75742722 -44002176 - MIR SINE MIR -26 236 29 180 135 0 0 chr13 75743418 75743455 -44001443 + (T)n Simple_repeat Simple_repeat 1 37 0 897 196 46 41 chr13 75743919 75744113 -44000785 + AluJo SINE Alu 1 195 -117 300 294 91 21 chr13 75745702 75745845 -43999053 - MIR SINE MIR -16 246 94 187 364 35 60 chr13 75746659 75746902 -43997996 + L2 LINE L2 2703 2949 -323 892 196 72 5 chr13 75746902 75747096 -43997802 + MER3 DNA MER1_type 1 207 -2 187 364 35 60 chr13 75747096 75747194 -43997704 + L2 LINE L2 2949 3048 -224 24 0 0 0 chr13 75748173 75748197 -43996701 + GC_rich Low_complexity Low_complexity 1 24 0 210 246 0 35 chr13 75748495 75748552 -43996346 + CT-rich Low_complexity Low_complexity 1 55 0 477 0 0 0 chr13 75750618 75750671 -43994227 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 382 318 71 50 chr13 75750673 75750953 -43993945 + L1ME1 LINE L1 122 407 -5712 2329 115 8 11 chr13 75751045 75751401 -43993497 + THE1A LTR MaLR 1 355 0 373 294 66 33 chr13 75751764 75752107 -43992791 + L1ME1 LINE L1 980 1257 -4862 584 308 19 56 chr13 75752333 75752693 -43992205 + L1ME1 LINE L1 3886 4232 -1897 1664 68 41 0 chr13 75752838 75753059 -43991839 + MER30 DNA MER1_type 1 230 0 260 172 0 31 chr13 75753176 75753240 -43991658 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 571 306 70 26 chr13 75753271 75753728 -43991170 + L1ME1 LINE L1 4507 4983 -1146 516 272 97 11 chr13 75753828 75754226 -43990672 + L1ME1 LINE L1 5114 5548 -599 845 205 18 6 chr13 75754233 75754399 -43990499 - LTR33 LTR ERVL -12 509 342 537 241 71 47 chr13 75754505 75754675 -43990223 - LTR33 LTR ERVL -347 174 1 434 282 86 74 chr13 75754675 75755026 -43989872 + L1ME1 LINE L1 5545 5899 -254 1050 230 137 33 chr13 75755241 75755636 -43989262 - L1ME LINE L1 -459 5707 5272 651 287 5 0 chr13 75755702 75755897 -43989001 + L1ME1 LINE L1 5940 6135 -14 1154 241 56 14 chr13 75756728 75757085 -43987813 - MLT1A2 LTR MaLR -2 372 1 1073 240 90 73 chr13 75757511 75757655 -43987243 - L1MC5 LINE L1 -49 7912 7772 2119 140 0 3 chr13 75757655 75757962 -43986936 - AluJb SINE Alu -5 307 2 1073 240 90 73 chr13 75757962 75758232 -43986666 - L1MC5 LINE L1 -189 7772 7481 1902 96 85 0 chr13 75758232 75758492 -43986406 + AluSx SINE Alu 1 282 -30 1073 240 90 73 chr13 75758492 75758730 -43986168 - L1MC5 LINE L1 -480 7481 7248 334 281 44 35 chr13 75759317 75759431 -43985467 + MIR SINE MIR 8 122 -140 231 228 70 0 chr13 75759537 75759594 -43985304 + MIR SINE MIR 110 170 -92 1554 182 52 33 chr13 75760903 75761253 -43983645 + MLT1A1 LTR MaLR 1 357 -8 800 195 12 6 chr13 75761381 75761545 -43983353 - MER5A DNA MER1_type -8 181 17 194 202 245 64 chr13 75761654 75761748 -43983150 - L2 LINE L2 -1 3271 3161 200 184 0 0 chr13 75761835 75761873 -43983025 - L2 LINE L2 -251 3062 3025 263 351 123 45 chr13 75762254 75762462 -43982436 + L2 LINE L2 2914 3159 -113 207 100 0 0 chr13 75762462 75762492 -43982406 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 263 351 123 45 chr13 75762492 75762616 -43982282 + L2 LINE L2 3159 3272 0 482 0 17 0 chr13 75762701 75762759 -43982139 + (TTTTA)n Simple_repeat Simple_repeat 3 61 0 1579 152 10 69 chr13 75762762 75763051 -43981847 - AluJo SINE Alu -30 282 11 550 226 68 7 chr13 75763202 75763348 -43981550 - L1MA10 LINE L1 0 6334 6180 26 30 0 0 chr13 75763357 75763390 -43981508 + AT_rich Low_complexity Low_complexity 1 33 0 2844 188 75 5 chr13 75763763 75764364 -43980534 - MER99 DNA DNA -1 827 185 278 236 0 0 chr13 75765039 75765094 -43979804 - MER99 DNA DNA -725 103 49 1145 279 109 25 chr13 75765797 75766363 -43978535 + HAL1 LINE L1 1191 1804 -703 344 302 142 45 chr13 75766365 75766633 -43978265 + HAL1 LINE L1 1850 2143 -364 1094 240 59 11 chr13 75766668 75766956 -43977942 + MLT1F1 LTR MaLR 246 567 0 426 108 0 0 chr13 75767650 75767715 -43977183 + (TCCCC)n Simple_repeat Simple_repeat 5 69 0 2007 131 15 21 chr13 75767742 75768077 -43976821 - MER1B DNA MER1_type 0 337 5 183 350 51 34 chr13 75768790 75768907 -43975991 - L2 LINE L2 0 3272 3154 22 0 0 0 chr13 75768950 75768972 -43975926 + AT_rich Low_complexity Low_complexity 1 22 0 690 239 5 76 chr13 75770476 75770586 -43974312 + MER45A DNA AcHobo 8 101 -1480 2087 130 3 16 chr13 75770586 75770902 -43973996 - AluSx SINE Alu 0 312 1 690 239 5 76 chr13 75770902 75770975 -43973923 + MER45A DNA AcHobo 101 178 0 299 293 72 27 chr13 75771137 75771359 -43973539 + L1ME3A LINE L1 4788 5019 -1127 390 312 75 3 chr13 75771472 75771754 -43973144 + L1ME3A LINE L1 5255 5556 -606 735 130 15 0 chr13 75771764 75771900 -43972998 - L1MA5A LINE L1 0 6297 6154 6625 66 18 0 chr13 75771906 75772984 -43971914 - L1PA7 LINE L1 0 6154 5058 2248 92 0 0 chr13 75772984 75773300 -43971598 + L1PA7 LINE L1 4748 5063 -1083 1115 110 18 153 chr13 75773304 75773586 -43971312 - L1MA7 LINE L1 -127 6164 5921 456 280 145 25 chr13 75773584 75773866 -43971032 + L1ME3A LINE L1 5561 5876 -294 * 21 0 0 0 chr13 75774350 75774371 -43970527 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr13 75775364 75775386 -43969512 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 526 255 166 0 chr13 75776177 75776322 -43968576 + MER5A DNA MER1_type 9 177 -12 25 65 0 0 chr13 75776945 75776991 -43967907 + AT_rich Low_complexity Low_complexity 1 46 0 428 139 13 0 chr13 75777681 75777760 -43967138 + CT-rich Low_complexity Low_complexity 2 81 0 1244 141 0 5 chr13 75777762 75777954 -43966944 - AluSx SINE Alu -121 191 1 325 209 254 1 chr13 75778511 75778701 -43966197 + LTR54B LTR ERV1 1 269 -229 525 335 25 18 chr13 75778819 75779094 -43965804 - MER34 LTR ERV1 -265 277 1 335 340 25 25 chr13 75779739 75779898 -43965000 + MIR SINE MIR 25 183 -79 536 210 84 48 chr13 75780045 75780212 -43964686 - MER5B DNA MER1_type -3 175 3 273 348 86 27 chr13 75781555 75781742 -43963156 + MLT1K LTR MaLR 208 405 -183 194 309 103 0 chr13 75781844 75781912 -43962986 + L3 LINE CR1 1500 1574 -3 1854 130 82 23 chr13 75781940 75782294 -43962604 + THE1C LTR MaLR 1 375 0 9603 134 48 3 chr13 75782294 75783806 -43961092 + THE1C-int LTR MaLR 1 1580 0 1909 125 85 23 chr13 75783806 75784159 -43960739 + THE1C LTR MaLR 1 375 0 258 217 0 14 chr13 75785908 75785977 -43958921 - L1MEc LINE L1 -4113 2283 2216 2396 63 3 13 chr13 75786690 75786993 -43957905 - AluSp SINE Alu -11 302 3 2018 109 10 14 chr13 75787114 75787408 -43957490 - AluY SINE Alu -18 293 1 299 95 0 0 chr13 75787420 75787462 -43957436 - Alu SINE Alu -5 303 262 2034 112 0 18 chr13 75787586 75787872 -43957026 + AluSc SINE Alu 9 289 -20 200 372 51 0 chr13 75788368 75788446 -43956452 + L2 LINE L2 3168 3249 -23 5889 215 77 64 chr13 75788461 75789786 -43955112 + L1MCa LINE L1 7 1313 -5113 2231 97 3 3 chr13 75789786 75790076 -43954822 + AluSg SINE Alu 1 290 -20 5889 215 77 64 chr13 75790076 75791681 -43953217 + L1MCa LINE L1 1313 3029 -3397 645 211 45 6 chr13 75791690 75791846 -43953052 + L1MCa LINE L1 3249 3410 -3016 1800 109 4 0 chr13 75792092 75792367 -43952531 + L1MA4 LINE L1 6018 6293 -7 242 194 16 0 chr13 75792395 75792457 -43952441 + (CAT)n Simple_repeat Simple_repeat 3 65 0 1749 168 89 8 chr13 75794218 75794590 -43950308 + MSTB LTR MaLR 1 432 0 252 0 0 0 chr13 75796964 75796992 -43947906 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1488 169 37 113 chr13 75797580 75797959 -43946939 - MLT1A1 LTR MaLR -15 350 1 1903 144 0 17 chr13 75798849 75799164 -43945734 - AluSx SINE Alu 0 311 2 2509 25 0 0 chr13 75799593 75799900 -43944998 + AluY SINE Alu 1 307 0 252 366 69 0 chr13 75799999 75800100 -43944798 + L2 LINE L2 3115 3222 -50 227 285 73 99 chr13 75801392 75801543 -43943355 - L2 LINE L2 -2065 1249 1103 243 239 0 45 chr13 75801568 75801635 -43943263 - L2 LINE L2 -3 3269 3206 262 271 84 65 chr13 75802108 75802215 -43942683 - L2 LINE L2 -606 2708 2600 2289 131 21 24 chr13 75802300 75802675 -43942223 + THE1C LTR MaLR 2 375 0 1914 165 58 6 chr13 75803568 75803914 -43940984 + THE1B LTR MaLR 1 364 0 24 77 0 0 chr13 75804994 75805046 -43939852 + AT_rich Low_complexity Low_complexity 1 52 0 621 220 192 0 chr13 75805242 75805424 -43939474 - MIR SINE MIR 0 262 46 257 329 0 0 chr13 75805707 75805777 -43939121 + MIR3 SINE MIR 94 163 -45 1473 231 92 29 chr13 75806278 75806724 -43938174 + MLT2B1 LTR ERVL 1 474 -46 221 229 0 0 chr13 75806724 75806772 -43938126 + (TG)n Simple_repeat Simple_repeat 2 49 0 310 140 0 0 chr13 75806774 75806826 -43938072 + MLT2C2 LTR ERVL 400 462 -2 697 204 149 45 chr13 75807371 75807572 -43937326 + MER58A DNA MER1_type 1 222 -2 2250 102 0 0 chr13 75809058 75809373 -43935525 + AluSq SINE Alu 1 315 0 1894 108 26 56 chr13 75810073 75810379 -43934519 - AluSg SINE Alu -13 297 1 26 64 0 0 chr13 75810673 75810720 -43934178 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr13 75811555 75811577 -43933321 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 75811703 75811736 -43933162 + AT_rich Low_complexity Low_complexity 1 33 0 1349 126 46 4 chr13 75811807 75812046 -43932852 + Tigger7 DNA MER2_type 2336 2584 -3 297 287 43 32 chr13 75812094 75812188 -43932710 + MIR3 SINE MIR 108 202 -6 32 43 0 0 chr13 75812825 75812871 -43932027 + AT_rich Low_complexity Low_complexity 1 46 0 246 105 0 0 chr13 75813706 75813744 -43931154 + (T)n Simple_repeat Simple_repeat 1 38 0 965 321 56 38 chr13 75814391 75815048 -43929850 + HERVL LTR ERVL 3107 3775 -1879 2099 230 143 36 chr13 75815379 75816070 -43928828 + LTR41 LTR ERVL 1 765 -8 539 301 41 20 chr13 75816079 75816275 -43928623 + HERVL LTR ERVL 4166 4365 -1399 540 336 28 28 chr13 75816852 75817138 -43927760 + LTR16C LTR ERVL 206 491 0 329 363 83 29 chr13 75817178 75817669 -43927229 + L2 LINE L2 2091 2608 -706 243 0 0 0 chr13 75819882 75819909 -43924989 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 192 125 0 0 chr13 75821440 75821472 -43923426 + (TG)n Simple_repeat Simple_repeat 2 33 0 197 353 76 50 chr13 75821560 75821679 -43923219 + L2 LINE L2 3142 3263 -9 2246 153 33 31 chr13 75822551 75823100 -43921798 + MLT2A2 LTR ERVL 1 554 0 591 230 123 7 chr13 75823208 75823426 -43921472 - MIR SINE MIR -3 259 9 180 274 118 29 chr13 75824086 75824188 -43920710 - L3 LINE CR1 -177 1400 1290 302 325 8 17 chr13 75824459 75824579 -43920319 - L2 LINE L2 -2 3311 3193 25 65 0 0 chr13 75827182 75827228 -43917670 + AT_rich Low_complexity Low_complexity 1 46 0 195 304 36 0 chr13 75827741 75827797 -43917101 - MIR3 SINE MIR -51 157 100 194 330 10 40 chr13 75829001 75829101 -43915797 - L3 LINE CR1 -14 1563 1467 497 273 73 29 chr13 75829149 75829354 -43915544 - MIR SINE MIR -29 233 20 673 362 91 28 chr13 75829855 75830319 -43914579 - L3 LINE CR1 -206 1371 879 313 119 119 0 chr13 75830338 75830405 -43914493 - L1MD2 LINE L1 0 6359 6285 2756 200 44 0 chr13 75830407 75830952 -43913946 - L1MD1 LINE L1 -33 6209 5641 390 189 95 0 chr13 75830948 75831087 -43913811 - L1MD1 LINE L1 -772 5374 5225 * 2473 193 8 37 chr13 75831084 75831685 -43913213 + L1 LINE L1 4273 4856 -1290 452 305 62 23 chr13 75831865 75832121 -43912777 - L1MCc LINE L1 -5824 599 334 1608 127 48 70 chr13 75832121 75832437 -43912461 - MER1B DNA MER1_type 0 339 31 1218 247 48 0 chr13 75832438 75832754 -43912144 - L1MCc LINE L1 -6075 348 18 310 231 43 68 chr13 75832773 75832865 -43912033 + L1ME3A LINE L1 5101 5191 -955 2115 99 19 22 chr13 75832865 75833177 -43911721 + AluY SINE Alu 1 311 0 310 231 43 68 chr13 75833177 75833201 -43911697 + L1ME3A LINE L1 5191 5214 -932 1852 255 97 35 chr13 75833272 75833377 -43911521 + L1ME3A LINE L1 5259 5356 -814 2334 102 3 0 chr13 75833377 75833682 -43911216 + AluSp SINE Alu 1 306 -7 1852 255 97 35 chr13 75833682 75834387 -43910511 + L1ME3A LINE L1 5356 6120 -50 240 255 53 11 chr13 75834410 75834504 -43910394 + L1ME3A LINE L1 6070 6167 -3 3044 60 36 7 chr13 75835185 75835603 -43909295 - L1PA7 LINE L1 0 6154 5725 1963 232 74 12 chr13 75835637 75836125 -43908773 + MLT1E2 LTR MaLR 52 569 -57 347 241 0 0 chr13 75836145 75836224 -43908674 + MLT1E2 LTR MaLR 539 617 -7 572 312 32 45 chr13 75836531 75836778 -43908120 - MIR SINE MIR -11 251 8 1736 190 0 0 chr13 75837299 75837588 -43907310 - AluJo SINE Alu -23 289 1 21 36 0 0 chr13 75837660 75837688 -43907210 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 75838804 75838825 -43906073 + AT_rich Low_complexity Low_complexity 1 21 0 326 343 139 12 chr13 75839536 75839874 -43905024 + L2 LINE L2 1733 2113 -1201 296 125 0 18 chr13 75839879 75839935 -43904963 + (TG)n Simple_repeat Simple_repeat 2 56 0 * 386 181 0 56 chr13 75839934 75840078 -43904820 + (TA)n Simple_repeat Simple_repeat 1 136 0 275 111 0 19 chr13 75840067 75840121 -43904777 + (CA)n Simple_repeat Simple_repeat 2 54 0 * 331 361 78 31 chr13 75840188 75840443 -43904455 + L2 LINE L2 2552 2818 -496 183 343 41 14 chr13 75840527 75840600 -43904298 - L2 LINE L2 -342 2971 2897 1537 220 66 66 chr13 75840746 75841247 -43903651 + MLT2B1 LTR ERVL 1 410 -4 541 202 18 0 chr13 75841254 75841363 -43903535 + MLT1E2-int LTR MaLR 5 115 -1620 * 1154 224 49 109 chr13 75841358 75841923 -43902975 + MLT1E2-int LTR MaLR 264 885 -486 319 213 12 0 chr13 75841971 75842051 -43902847 + MLT-int LTR MaLR 687 767 -968 1677 237 73 23 chr13 75842226 75842665 -43902233 + MLT1A2-int LTR MaLR 1271 1731 -4 440 201 76 89 chr13 75842673 75842849 -43902049 + MLT1A2 LTR MaLR 20 187 -187 231 200 22 0 chr13 75842849 75842894 -43902004 + CT-rich Low_complexity Low_complexity 3 48 0 691 229 48 12 chr13 75842898 75843064 -43901834 + MLT1A2 LTR MaLR 203 374 0 591 244 26 21 chr13 75844196 75844389 -43900509 - MER114 LTR ERV 0 648 455 266 220 34 127 chr13 75844478 75844596 -43900302 - L1ME3 LINE L1 -52 6110 6004 1124 214 80 11 chr13 75844626 75845000 -43899898 - MER114 LTR ERV -220 428 29 514 244 5 128 chr13 75845297 75845359 -43899539 - L1MC4 LINE L1 0 8042 7974 2221 114 0 0 chr13 75845359 75845657 -43899241 + AluSx SINE Alu 1 298 -14 514 244 5 128 chr13 75845657 75845999 -43898899 - L1MC4 LINE L1 -68 7974 7688 1998 246 90 2 chr13 75846084 75846572 -43898326 - MLT1F LTR MaLR -10 532 2 1683 164 0 50 chr13 75846610 75846964 -43897934 - AluJb SINE Alu 0 339 1 254 292 0 0 chr13 75847049 75847121 -43897777 - MER94 DNA DNA -62 72 1 548 312 39 60 chr13 75847448 75847781 -43897117 - L2 LINE L2 0 3313 2988 21 36 0 0 chr13 75848465 75848493 -43896405 + AT_rich Low_complexity Low_complexity 1 28 0 384 316 57 17 chr13 75849204 75849381 -43895517 + MIR SINE MIR 8 191 -71 21 57 0 0 chr13 75849444 75849479 -43895419 + AT_rich Low_complexity Low_complexity 1 35 0 229 219 0 41 chr13 75849976 75850049 -43894849 + T-rich Low_complexity Low_complexity 5 74 0 973 274 120 27 chr13 75850239 75850931 -43893967 + L1ME3A LINE L1 5157 5929 -241 23 33 0 0 chr13 75852694 75852724 -43892174 + AT_rich Low_complexity Low_complexity 1 30 0 201 39 0 0 chr13 75855181 75855207 -43889691 + (CAA)n Simple_repeat Simple_repeat 1 26 0 262 244 11 11 chr13 75855352 75855442 -43889456 + (TA)n Simple_repeat Simple_repeat 2 91 0 893 303 121 41 chr13 75856578 75857099 -43887799 - MLT1L LTR MaLR -49 527 3 5251 187 61 34 chr13 75857324 75858550 -43886348 + L1MC3 LINE L1 5205 5327 -819 2361 90 0 0 chr13 75858550 75858861 -43886037 + AluY SINE Alu 1 311 0 5251 187 61 34 chr13 75858861 75858935 -43885963 + L1MC3 LINE L1 5327 5397 -749 1133 239 65 47 chr13 75858935 75859417 -43885481 - MER39 LTR ERV1 0 705 5 2390 184 90 13 chr13 75859417 75859938 -43884960 + L1MC3 LINE L1 6545 7105 -680 263 325 49 61 chr13 75860502 75860665 -43884233 + MIR3 SINE MIR 3 163 -45 25 0 0 0 chr13 75862307 75862332 -43882566 + AT_rich Low_complexity Low_complexity 1 25 0 192 135 0 0 chr13 75863107 75863144 -43881754 + (TC)n Simple_repeat Simple_repeat 1 37 0 242 261 22 116 chr13 75863756 75863833 -43881065 - MLT1K LTR MaLR -114 474 414 180 77 0 0 chr13 75863833 75863859 -43881039 + (CA)n Simple_repeat Simple_repeat 1 26 0 242 261 22 116 chr13 75863859 75863919 -43880979 - MLT1K LTR MaLR -174 414 350 537 163 52 39 chr13 75863969 75864122 -43880776 + MER103 DNA DNA 10 164 -2 1583 191 0 0 chr13 75865021 75865293 -43879605 + AluJb SINE Alu 27 298 -14 969 187 0 0 chr13 75865299 75865454 -43879444 - FAM SINE Alu -30 155 1 396 255 0 20 chr13 75866842 75866940 -43877958 + MER5A DNA MER1_type 9 104 -85 812 189 31 0 chr13 75869035 75869194 -43875704 - FRAM SINE Alu -12 164 1 187 357 18 0 chr13 75870023 75870079 -43874819 - L2 LINE L2 -88 3184 3128 26 0 0 0 chr13 75870145 75870171 -43874727 + AT_rich Low_complexity Low_complexity 1 26 0 546 303 97 13 chr13 75870561 75870800 -43874098 + MIR SINE MIR 2 261 -1 15253 38 1 1 chr13 75871112 75873717 -43871181 - L1PA5 LINE L1 -4 6150 3545 198 0 0 0 chr13 75873717 75873739 -43871159 + (T)n Simple_repeat Simple_repeat 1 22 0 2823 159 74 60 chr13 75873975 75874610 -43870288 + MER73 LTR ERVL 1 644 0 759 167 0 0 chr13 75874610 75874772 -43870126 + (CCTAT)n Simple_repeat Simple_repeat 1 162 0 225 83 0 0 chr13 75874935 75874971 -43869927 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2195 85 0 0 chr13 75874976 75875257 -43869641 - AluY SINE Alu -30 281 1 237 342 56 18 chr13 75875417 75875585 -43869313 + MIR SINE MIR 55 227 -35 236 185 0 37 chr13 75875616 75875670 -43869228 - L2 LINE L2 0 3313 3262 198 0 0 0 chr13 75875701 75875723 -43869175 + (ATG)n Simple_repeat Simple_repeat 3 24 0 712 163 0 15 chr13 75876079 75876214 -43868684 - L1PB4 LINE L1 0 6156 6024 342 266 44 44 chr13 75877180 75877293 -43867605 - MIR SINE MIR -84 178 66 900 266 46 4 chr13 75877517 75877758 -43867140 - MLT1H LTR MaLR -288 261 11 223 293 189 38 chr13 75877759 75877865 -43867033 - L2 LINE L2 -15 3257 3136 69 59 0 0 chr13 75878410 75878528 -43866370 + AT_rich Low_complexity Low_complexity 1 118 0 321 336 67 8 chr13 75878622 75878756 -43866142 + MIR3 SINE MIR 21 162 -46 225 0 0 0 chr13 75878823 75878860 -43866038 + (GGA)n Simple_repeat Simple_repeat 1 62 0 225 0 0 0 chr13 75878860 75878885 -43866013 + (GGA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr13 75879126 75879153 -43865745 + (TA)n Simple_repeat Simple_repeat 2 28 0 2040 156 120 5 chr13 75880528 75880912 -43863986 - MSTA LTR MaLR 0 428 1 260 254 5 0 chr13 75881121 75881213 -43863685 + L1ME LINE L1 5757 5854 -267 260 266 89 48 chr13 75883183 75883307 -43861591 - L2 LINE L2 -6 3307 3179 2179 100 7 10 chr13 75883605 75883894 -43861004 + AluSq SINE Alu 1 288 -25 1994 158 0 3 chr13 75885012 75885316 -43859582 - AluJb SINE Alu -4 308 6 8010 140 28 49 chr13 75885841 75887397 -43857501 - Tigger1 DNA MER2_type 0 2418 896 4236 128 21 140 chr13 75887487 75888503 -43856395 - Tigger1 DNA MER2_type -1522 896 2 364 288 176 0 chr13 75888506 75888631 -43856267 + MER63A DNA MER1_type 64 210 0 205 217 22 0 chr13 75889330 75889376 -43855522 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 2314 239 13 55 chr13 75889599 75890206 -43854692 + L1ME1 LINE L1 5371 5937 -229 2114 133 3 3 chr13 75890206 75890507 -43854391 + AluSx SINE Alu 1 301 -11 2314 239 13 55 chr13 75890507 75890722 -43854176 + L1ME1 LINE L1 5937 6159 -7 336 237 124 24 chr13 75890725 75890894 -43854004 - LTR50 LTR ERVL -127 668 483 320 148 99 37 chr13 75890940 75891021 -43853877 - LTR50 LTR ERVL -474 321 236 3811 133 155 92 chr13 75891050 75892507 -43852391 + pTR5 LTR ERV1 745 2438 0 463 215 63 51 chr13 75892544 75892702 -43852196 - LTR50 LTR ERVL -615 180 21 244 186 0 0 chr13 75892775 75892818 -43852080 + MER69 DNA AcHobo 2481 2523 -3 541 103 0 0 chr13 75893965 75894043 -43850855 - MER41D LTR ERV1 -479 78 1 184 320 48 72 chr13 75894362 75894487 -43850411 + L3 LINE CR1 522 643 -934 388 337 52 40 chr13 75894889 75895138 -43849760 + L3b LINE CR1 1104 1355 -228 817 225 21 11 chr13 75899251 75899438 -43845460 + MER5A DNA MER1_type 1 189 0 846 259 62 71 chr13 75899444 75899850 -43845048 - HsTC2a DNA Tc2 -341 403 2 947 184 37 0 chr13 75899850 75900013 -43844885 + FRAM SINE Alu 1 169 -7 488 157 11 73 chr13 75900045 75900236 -43844662 + GA-rich Low_complexity Low_complexity 2 180 0 443 185 0 9 chr13 75900245 75900353 -43844545 + G-rich Low_complexity Low_complexity 2 108 0 222 71 0 0 chr13 75900353 75900381 -43844517 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 33 56 0 0 chr13 75901333 75901387 -43843511 + AT_rich Low_complexity Low_complexity 1 54 0 336 301 122 2 chr13 75902033 75902166 -43842732 + MIR SINE MIR 3 147 -62 2097 117 45 36 chr13 75902947 75903306 -43841592 - THE1B LTR MaLR -2 362 1 240 313 94 10 chr13 75903313 75903409 -43841489 + L2 LINE L2 3209 3312 -1 749 244 57 11 chr13 75903454 75903630 -43841268 + MER5A DNA MER1_type 5 188 -1 551 213 189 0 chr13 75904680 75904802 -43840096 - MER5A DNA MER1_type -6 183 39 251 259 0 0 chr13 75905907 75905965 -43838933 + (CA)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr13 75906681 75906702 -43838196 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr13 75906742 75906770 -43838128 + (T)n Simple_repeat Simple_repeat 1 28 0 222 195 37 0 chr13 75906889 75906971 -43837927 + (TA)n Simple_repeat Simple_repeat 2 86 0 810 198 42 0 chr13 75907341 75907508 -43837390 + MER58B DNA MER1_type 168 341 0 1970 127 187 8 chr13 75907730 75908093 -43836805 + MSTA LTR MaLR 1 428 0 330 26 0 0 chr13 75908123 75908162 -43836736 + (CA)n Simple_repeat Simple_repeat 2 40 0 399 325 96 10 chr13 75909046 75909243 -43835655 - MIR SINE MIR -28 234 21 618 177 0 81 chr13 75910513 75910637 -43834261 + FLAM_A SINE Alu 1 114 -19 1794 191 7 10 chr13 75910900 75911203 -43833695 + AluJo SINE Alu 1 302 -10 195 274 242 11 chr13 75911679 75911774 -43833124 - L2 LINE L2 0 3313 3197 229 286 82 31 chr13 75912925 75913023 -43831875 - L2 LINE L2 -12 3301 3199 235 238 9 38 chr13 75913540 75913645 -43831253 + (TA)n Simple_repeat Simple_repeat 2 103 0 188 150 100 0 chr13 75915897 75915937 -43828961 - L2 LINE L2 -15 3298 3255 21 82 0 0 chr13 75917526 75917575 -43827323 + AT_rich Low_complexity Low_complexity 1 49 0 2171 179 30 8 chr13 75920111 75920513 -43824385 + LTR57 LTR ERVL 1 411 0 1253 207 0 69 chr13 75920514 75920819 -43824079 + LTR57-int LTR ERVL 2 285 -5058 2258 116 0 7 chr13 75920850 75921160 -43823738 + AluSx SINE Alu 1 308 -4 7051 128 58 31 chr13 75921266 75922135 -43822763 + LTR57-int LTR ERVL 301 1220 -4123 2169 108 3 0 chr13 75922135 75922431 -43822467 + AluY SINE Alu 1 297 -14 7051 128 58 31 chr13 75922431 75922902 -43821996 + LTR57-int LTR ERVL 1220 1677 -3666 423 183 0 0 chr13 75922899 75922981 -43821917 + LTR57-int LTR ERVL 2515 2596 -2747 * 354 148 0 0 chr13 75922966 75923020 -43821878 + LTR57-int LTR ERVL 2792 2845 -2498 * 6972 156 5 2 chr13 75923008 75924142 -43820756 + LTR57-int LTR ERVL 3882 5019 -324 1156 195 75 8 chr13 75924142 75924208 -43820690 + AluJo SINE Alu 55 115 -197 216 0 0 0 chr13 75924208 75924232 -43820666 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1156 195 75 8 chr13 75924232 75924406 -43820492 + AluJo SINE Alu 115 311 -1 1967 150 3 0 chr13 75924414 75924728 -43820170 + LTR57-int LTR ERVL 5029 5343 0 2315 138 50 20 chr13 75924736 75925135 -43819763 + LTR57 LTR ERVL 1 411 0 304 365 39 86 chr13 75926083 75926466 -43818432 + L2 LINE L2 2897 3261 -11 1587 184 3 24 chr13 75926667 75926960 -43817938 + AluJo SINE Alu 1 287 -25 2135 114 20 0 chr13 75927362 75927659 -43817239 + AluSg SINE Alu 1 303 -7 1234 237 29 30 chr13 75927680 75928059 -43816839 + MLT1E3 LTR MaLR 200 623 -1 339 232 16 155 chr13 75928104 75928298 -43816600 - MIR SINE MIR -31 231 65 207 318 69 53 chr13 75928430 75928619 -43816279 - L2 LINE L2 -189 3083 2892 961 212 130 82 chr13 75929038 75929117 -43815781 + MSTD LTR MaLR 2 76 -320 2296 93 0 13 chr13 75929117 75929418 -43815480 + AluSx SINE Alu 1 297 -15 961 212 130 82 chr13 75929418 75929715 -43815183 + MSTD LTR MaLR 76 396 0 2325 52 3 0 chr13 75930284 75930595 -43814303 - AluY SINE Alu 0 311 3 354 304 122 21 chr13 75930600 75930837 -43814061 + HAL1 LINE L1 818 1078 -1429 820 243 79 8 chr13 75930851 75931118 -43813780 + L1MCc LINE L1 20 305 -6118 452 304 82 0 chr13 75931320 75931491 -43813407 + L1MCc LINE L1 971 1155 -5268 728 281 77 11 chr13 75931496 75931948 -43812950 + HAL1 LINE L1 1139 1620 -887 846 181 170 11 chr13 75932228 75932416 -43812482 - MER20 DNA MER1_type -1 218 1 443 284 44 6 chr13 75933060 75933243 -43811655 - MLT1J2 LTR MaLR -3 447 258 352 338 92 26 chr13 75935437 75935665 -43809233 - MIR SINE MIR 0 262 20 1914 154 7 3 chr13 75935839 75936137 -43808761 - AluJb SINE Alu -13 299 1 271 305 57 28 chr13 75936139 75936280 -43808618 + MIR SINE MIR 52 196 -66 573 168 26 26 chr13 75936554 75936667 -43808231 - FLAM_C SINE Alu -20 123 11 309 204 61 10 chr13 75936675 75936773 -43808125 + LTR48 LTR ERV1 386 488 -299 315 263 106 25 chr13 75936820 75936980 -43807918 + MER34 LTR ERV1 370 542 0 384 379 92 35 chr13 75936981 75937406 -43807492 - L2 LINE L2 0 3272 2824 713 267 148 5 chr13 75938400 75938617 -43806281 - MIR SINE MIR -6 256 9 2285 101 17 0 chr13 75939281 75939577 -43805321 + AluSg SINE Alu 1 301 -9 1869 158 0 30 chr13 75939804 75940107 -43804791 + AluJo SINE Alu 1 294 -18 2268 97 19 10 chr13 75941947 75942256 -43802642 + AluSx SINE Alu 1 312 0 186 211 26 0 chr13 75942777 75942815 -43802083 - L2 LINE L2 -11 3302 3264 510 249 74 91 chr13 75943249 75943599 -43801299 - MLT1I LTR MaLR 0 409 66 429 297 103 7 chr13 75943599 75943744 -43801154 - MIR SINE MIR -89 173 15 239 150 17 0 chr13 75943975 75944035 -43800863 + (ATG)n Simple_repeat Simple_repeat 3 63 0 452 249 88 28 chr13 75944054 75944235 -43800663 - MIR SINE MIR -15 247 56 1570 179 10 32 chr13 75945823 75946131 -43798767 + AluJo SINE Alu 1 301 -11 433 286 148 6 chr13 75946708 75946890 -43798008 - L2 LINE L2 -3 3310 3103 889 180 109 136 chr13 75947240 75947718 -43797180 + MER4C LTR ERV1 1 465 0 267 215 62 0 chr13 75947866 75947931 -43796967 - L2 LINE L2 0 3313 3245 22 56 0 0 chr13 75948077 75948113 -43796785 + AT_rich Low_complexity Low_complexity 1 36 0 1574 170 0 14 chr13 75948153 75948430 -43796468 - AluJo SINE Alu -39 273 1 798 173 22 32 chr13 75948513 75948700 -43796198 - MER33 DNA MER1_type -261 63 1 665 178 9 0 chr13 75949403 75949510 -43795388 + FLAM_C SINE Alu 1 108 -35 188 83 0 56 chr13 75949537 75949573 -43795325 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 299 293 60 45 chr13 75950076 75950430 -43794468 - MLT1L LTR MaLR -72 543 120 23 0 0 0 chr13 75950577 75950600 -43794298 + AT_rich Low_complexity Low_complexity 1 23 0 1879 183 57 18 chr13 75953677 75954204 -43790694 + MER65-int LTR ERV1 2849 3811 -1125 1966 242 69 4 chr13 75954319 75954810 -43790088 + MER65-int LTR ERV1 3605 4127 -744 650 158 0 17 chr13 75954892 75955012 -43789886 + MER65A LTR ERV1 327 444 -1 1909 116 31 20 chr13 75955510 75955802 -43789096 - AluSc SINE Alu -14 295 1 1692 180 3 52 chr13 75956315 75956642 -43788256 + AluJo SINE Alu 2 312 0 2194 116 0 19 chr13 75958608 75958926 -43785972 - AluSx SINE Alu 0 312 1 1373 203 101 0 chr13 75959448 75959724 -43785174 + AluJo SINE Alu 1 304 -8 243 88 0 0 chr13 75959724 75959758 -43785140 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 23 54 0 0 chr13 75960571 75960608 -43784290 + AT_rich Low_complexity Low_complexity 1 37 0 362 130 43 0 chr13 75960874 75960943 -43783955 - L1MA4A LINE L1 -12 6291 6220 2136 167 30 8 chr13 75960952 75961348 -43783550 - LTR57 LTR ERVL 0 411 7 12401 188 12 20 chr13 75961895 75965761 -43779137 - L1PB1 LINE L1 0 6867 3042 7500 107 18 10 chr13 75965730 75967442 -43777456 - L1PB1 LINE L1 -4355 2508 634 * 911 205 15 0 chr13 75967442 75967637 -43777261 - L1PB1 LINE L1 -6663 200 3 390 113 0 0 chr13 75967641 75967703 -43777195 - L1MA4 LINE L1 -113 6187 6126 845 214 13 134 chr13 75968764 75969041 -43775857 + LTR8 LTR ERV1 1 261 -436 1353 194 95 57 chr13 75969148 75969570 -43775328 + LTR8A LTR ERV1 287 724 -3 341 22 22 0 chr13 75969734 75969780 -43775118 + (TG)n Simple_repeat Simple_repeat 2 48 0 1454 229 3 7 chr13 75969913 75970255 -43774643 + AluJo SINE Alu 1 341 0 565 109 30 0 chr13 75970389 75970490 -43774408 + MER53 DNA DNA 12 115 -74 547 81 0 50 chr13 75970633 75970732 -43774166 + MER53 DNA DNA 94 187 -2 280 248 214 0 chr13 75971655 75971772 -43773126 - MIR SINE MIR -16 246 105 271 282 17 28 chr13 75971785 75971966 -43772932 - L1ME LINE L1 -3617 2463 2285 1031 231 19 19 chr13 75971970 75972291 -43772607 - L1M4 LINE L1 -860 5286 4966 249 211 15 113 chr13 75972323 75972456 -43772442 - L1ME LINE L1 -5941 129 10 7248 27 0 0 chr13 75972827 75973987 -43770911 + L1PA3 LINE L1 5008 6167 0 4551 204 10 11 chr13 75974555 75976290 -43768608 + L1M1 LINE L1 13 1832 -5733 1609 157 11 42 chr13 76076298 76076585 -43668313 + AluJo SINE Alu 31 308 -4 2357 103 0 0 chr13 76076585 76076886 -43668012 + AluSg SINE Alu 1 301 -9 2355 95 0 0 chr13 76077912 76078207 -43666691 - AluY SINE Alu -16 295 1 250 209 77 33 chr13 76078217 76078308 -43666590 + L2 LINE L2 1370 1464 -1850 663 208 125 0 chr13 76078309 76078453 -43666445 - AluJb SINE Alu -15 297 136 967 266 222 36 chr13 76078523 76078922 -43665976 + L2 LINE L2 1609 1932 -1382 2337 110 0 0 chr13 76078922 76079221 -43665677 + AluSx SINE Alu 1 299 -13 2174 69 42 0 chr13 76079221 76079481 -43665417 + AluSg SINE Alu 1 271 -39 967 266 222 36 chr13 76079481 76079863 -43665035 + L2 LINE L2 1931 2537 -777 1147 105 0 0 chr13 76079870 76080023 -43664875 - AluJb SINE Alu -158 154 2 1661 118 61 21 chr13 76080084 76080363 -43664535 + AluJo SINE Alu 17 306 -6 418 265 0 0 chr13 76081166 76081264 -43663634 - MER5A DNA MER1_type -83 106 9 2117 75 3 62 chr13 76081342 76081676 -43663222 - AluSg SINE Alu 0 310 6 403 20 0 0 chr13 76081676 76081725 -43663173 - AluY SINE Alu -261 50 2 2304 123 0 0 chr13 76081741 76082050 -43662848 - AluSx SINE Alu -3 309 1 444 272 33 44 chr13 76082050 76082230 -43662668 - L2 LINE L2 -1302 2012 1835 379 118 0 0 chr13 76082236 76082287 -43662611 - Tigger5 DNA MER2_type 0 2323 2273 225 291 162 29 chr13 76082421 76082631 -43662267 - L1MC/D LINE L1 -1883 5925 5688 855 182 84 7 chr13 76082691 76082805 -43662093 + AluJo SINE Alu 5 135 -177 231 61 0 0 chr13 76082805 76082838 -43662060 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 855 182 84 7 chr13 76082838 76082877 -43662021 + AluJo SINE Alu 135 170 -142 2493 87 0 6 chr13 76082879 76083191 -43661707 - AluSg SINE Alu 0 310 1 2316 72 0 4 chr13 76083192 76083469 -43661429 + AluSq SINE Alu 28 303 -10 285 250 29 66 chr13 76083573 76083647 -43661251 - L1MA9 LINE L1 -2 6310 6237 1087 244 61 66 chr13 76083647 76083732 -43661166 - L1ME1 LINE L1 -66 6100 6016 2110 136 0 16 chr13 76083732 76084048 -43660850 + AluSx SINE Alu 1 311 -1 1087 244 61 66 chr13 76084048 76084215 -43660683 - L1ME1 LINE L1 -150 6016 5850 2210 111 7 0 chr13 76084215 76084503 -43660395 + AluSx SINE Alu 16 305 -7 1087 244 61 66 chr13 76084503 76084536 -43660362 - L1ME1 LINE L1 -316 5850 5818 1939 169 0 0 chr13 76084536 76084826 -43660072 - AluJb SINE Alu -6 306 17 1087 244 61 66 chr13 76084826 76084947 -43659951 - L1ME1 LINE L1 -348 5818 5694 1672 168 21 44 chr13 76084970 76085140 -43659758 + MER34 LTR ERV1 11 171 -371 1676 156 3 43 chr13 76085140 76085441 -43659457 - AluJb SINE Alu -23 289 1 1672 168 21 44 chr13 76085441 76085610 -43659288 + MER34 LTR ERV1 171 342 -200 32 0 0 0 chr13 76085616 76085648 -43659250 + AT_rich Low_complexity Low_complexity 1 32 0 1760 159 27 20 chr13 76085648 76085944 -43658954 - AluJo SINE Alu -10 302 5 2166 125 10 3 chr13 76085960 76086255 -43658643 - AluSx SINE Alu -11 301 5 1093 183 33 0 chr13 76086256 76086469 -43658429 + MER34 LTR ERV1 323 542 0 210 37 0 0 chr13 76086510 76086537 -43658361 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 703 156 0 0 chr13 76086538 76086647 -43658251 - AluJ SINE Alu -26 286 178 992 178 5 61 chr13 76086672 76086869 -43658029 - AluJ SINE Alu -126 186 1 1713 191 0 23 chr13 76087146 76087455 -43657443 - AluJo SINE Alu -5 307 6 2402 93 0 10 chr13 76087480 76087781 -43657117 - AluSx SINE Alu -14 298 1 1446 157 3 99 chr13 76088127 76088242 -43656656 + AluJb SINE Alu 3 127 -175 2412 52 7 29 chr13 76088242 76088548 -43656350 - AluY SINE Alu -11 300 2 2112 144 0 3 chr13 76088549 76088847 -43656051 - AluSx SINE Alu -12 300 4 1446 157 3 99 chr13 76088847 76088875 -43656023 + AluJb SINE Alu 127 156 -146 2275 104 0 13 chr13 76088875 76089010 -43655888 + AluSx SINE Alu 1 136 -176 2321 80 3 49 chr13 76089010 76089334 -43655564 + AluSc SINE Alu 1 309 0 2275 104 0 13 chr13 76089334 76089514 -43655384 + AluSx SINE Alu 136 312 0 1446 157 3 99 chr13 76089514 76089699 -43655199 + AluJb SINE Alu 156 302 0 226 296 0 37 chr13 76089881 76089962 -43654936 + MIR SINE MIR 42 119 -89 22 0 0 0 chr13 76090165 76090187 -43654711 + AT_rich Low_complexity Low_complexity 1 22 0 2179 128 3 0 chr13 76090320 76090616 -43654282 - AluSx SINE Alu -15 297 1 1830 169 3 17 chr13 76090658 76090960 -43653938 + AluJo SINE Alu 1 298 -14 324 0 0 0 chr13 76091036 76091072 -43653826 + (CA)n Simple_repeat Simple_repeat 2 37 0 2294 109 6 3 chr13 76091095 76091406 -43653492 + AluSp SINE Alu 1 312 -1 1719 150 49 17 chr13 76091458 76091745 -43653153 - AluSx SINE Alu -16 296 1 2308 105 10 3 chr13 76092010 76092314 -43652584 - AluSx SINE Alu -6 306 1 2282 115 3 0 chr13 76092411 76092715 -43652183 - AluSx SINE Alu -7 305 1 2350 97 0 0 chr13 76092741 76093030 -43651868 + AluSg1 SINE Alu 1 289 -20 843 208 0 0 chr13 76093059 76093203 -43651695 + FRAM SINE Alu 12 155 -21 525 84 0 0 chr13 76093397 76093468 -43651430 - MER41A LTR ERV1 0 554 484 2187 117 3 26 chr13 76093468 76093776 -43651122 + AluSx SINE Alu 1 301 -11 695 153 36 0 chr13 76093855 76093966 -43650932 + FLAM_A SINE Alu 8 122 -20 1768 167 0 27 chr13 76093976 76094269 -43650629 + AluJo SINE Alu 9 293 -19 2419 99 0 10 chr13 76094271 76094404 -43650494 + AluSc SINE Alu 1 134 -175 2575 68 0 3 chr13 76094404 76094711 -43650187 + AluY SINE Alu 2 307 -4 2419 99 0 10 chr13 76094711 76094889 -43650009 + AluSc SINE Alu 134 309 0 614 99 0 0 chr13 76095026 76095107 -43649791 - AluSx SINE Alu -20 292 212 1499 150 0 0 chr13 76095136 76095349 -43649549 - AluSx SINE Alu -99 213 1 1136 159 0 0 chr13 76095351 76095521 -43649377 - AluSg/x SINE Alu -9 301 132 2120 139 0 3 chr13 76095521 76095816 -43649082 - AluSq SINE Alu -19 294 1 2546 74 0 3 chr13 76095826 76096138 -43648760 - AluY SINE Alu 0 311 1 211 292 133 8 chr13 76096906 76097026 -43647872 + MIR SINE MIR 36 170 -92 1861 166 3 28 chr13 76097050 76097184 -43647714 + AluJb SINE Alu 1 137 -175 2064 100 93 0 chr13 76097184 76097463 -43647435 + AluSx SINE Alu 1 305 -7 1861 166 3 28 chr13 76097463 76097648 -43647250 + AluJb SINE Alu 137 312 0 221 150 0 0 chr13 76099518 76099558 -43645340 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 71 0 0 chr13 76100586 76100628 -43644270 + GC_rich Low_complexity Low_complexity 1 42 0 2435 51 3 7 chr13 76100928 76101252 -43643646 - AluY SINE Alu 0 323 1 2279 90 13 0 chr13 76101254 76101553 -43643345 - AluSp SINE Alu -10 303 1 1485 141 48 67 chr13 76101588 76101901 -43642997 + AluSx SINE Alu 6 312 0 227 247 47 12 chr13 76102032 76102117 -43642781 - L1ME4a LINE L1 -24 6097 6010 1428 176 43 50 chr13 76102240 76102522 -43642376 + AluJo SINE Alu 1 282 -30 252 0 0 0 chr13 76102522 76102550 -43642348 + (GA)n Simple_repeat Simple_repeat 2 29 0 1428 176 43 50 chr13 76102550 76102568 -43642330 + AluJo SINE Alu 282 299 -13 321 325 77 56 chr13 76102818 76103060 -43641838 + L2 LINE L2 2805 3059 -254 2474 103 0 0 chr13 76103060 76103370 -43641528 + AluSx SINE Alu 3 312 0 321 325 77 56 chr13 76103370 76103502 -43641396 + L2 LINE L2 3059 3187 -126 1715 185 36 13 chr13 76103532 76103835 -43641063 - AluJb SINE Alu -2 310 1 2309 105 0 7 chr13 76104019 76104325 -43640573 + AluSc SINE Alu 1 304 -5 1076 137 55 7 chr13 76104341 76104565 -43640333 + AluJo SINE Alu 6 298 -14 2464 51 0 17 chr13 76104567 76104863 -43640035 + AluY SINE Alu 1 291 -20 24 0 0 0 chr13 76104863 76104887 -43640011 + AT_rich Low_complexity Low_complexity 1 24 0 682 162 10 132 chr13 76105004 76105208 -43639690 - AluSg/x SINE Alu -12 297 119 2150 127 0 3 chr13 76105337 76105636 -43639262 + AluSx SINE Alu 1 298 -14 325 198 45 117 chr13 76105697 76105919 -43638979 - L2 LINE L2 -407 2907 2702 2317 81 7 10 chr13 76106028 76106324 -43638574 + AluSq SINE Alu 1 295 -18 757 139 0 0 chr13 76106326 76106441 -43638457 + AluJo/FLAM SINE Alu 1 115 -187 2379 71 0 3 chr13 76106443 76106747 -43638151 - AluY SINE Alu 0 303 1 780 169 0 22 chr13 76107056 76107192 -43637706 + FLAM_A SINE Alu 1 133 0 238 208 0 0 chr13 76107533 76107586 -43637312 + T-rich Low_complexity Low_complexity 1 53 0 1543 181 96 7 chr13 76107599 76107870 -43637028 + AluJb SINE Alu 1 295 -17 740 136 8 8 chr13 76107870 76107988 -43636910 - AluJo/FLAM SINE Alu -184 118 1 2285 97 0 25 chr13 76108295 76108614 -43636284 - AluSx SINE Alu -1 311 1 202 0 91 0 chr13 76108953 76108986 -43635912 + A-rich Low_complexity Low_complexity 1 36 0 639 183 0 0 chr13 76108996 76109100 -43635798 + FLAM_C SINE Alu 16 119 -24 207 133 33 17 chr13 76109101 76109161 -43635737 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 * 728 88 12 47 chr13 76109147 76109318 -43635580 + (GGAGA)n Simple_repeat Simple_repeat 2 166 0 2167 103 13 3 chr13 76110086 76110386 -43634512 + AluSx SINE Alu 1 303 -9 2692 42 0 0 chr13 76110434 76110741 -43634157 - AluY SINE Alu -4 307 1 2097 112 49 0 chr13 76111397 76111683 -43633215 - AluSq SINE Alu -13 300 1 190 0 67 0 chr13 76111736 76111766 -43633132 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1058 98 0 0 chr13 76111768 76111900 -43632998 - AluSq/x SINE Alu -181 132 1 1610 122 9 0 chr13 76111923 76112145 -43632753 - AluJb SINE Alu -2 310 87 374 207 41 16 chr13 76112145 76112266 -43632632 - L1M4 LINE L1 -3108 3274 3151 2134 107 44 0 chr13 76112269 76112567 -43632331 - AluSq SINE Alu -2 311 1 286 290 43 0 chr13 76112571 76112640 -43632258 - FLAM_A SINE Alu -60 72 1 1458 186 16 22 chr13 76112640 76112947 -43631951 - L1M4 LINE L1 -3930 2454 2148 1754 177 13 13 chr13 76112947 76113246 -43631652 - AluJb SINE Alu -12 300 2 1458 186 16 22 chr13 76113246 76113303 -43631595 - L1M4 LINE L1 -4236 2148 2092 606 206 0 9 chr13 76113314 76113421 -43631477 - FLAM_A SINE Alu -35 107 2 2618 74 3 0 chr13 76113450 76113762 -43631136 - AluSp SINE Alu 0 313 1 248 216 49 49 chr13 76113762 76113799 -43631099 - L1M4 LINE L1 -4274 2110 2074 1843 174 3 16 chr13 76113799 76114115 -43630783 - AluJb SINE Alu 0 312 1 248 216 49 49 chr13 76114115 76114179 -43630719 - L1M4 LINE L1 -4309 2075 2009 2243 119 3 0 chr13 76114182 76114484 -43630414 - AluSp SINE Alu -10 303 1 2372 107 0 0 chr13 76114484 76114782 -43630116 - AluSx SINE Alu -13 299 1 321 283 108 0 chr13 76114782 76114902 -43629996 - L1M4 LINE L1 -5754 630 498 303 143 0 131 chr13 76114906 76114924 -43629974 + LTR24B LTR ERV1 4 23 -553 1946 168 0 7 chr13 76114924 76115234 -43629664 + AluJo SINE Alu 1 308 -4 303 143 0 131 chr13 76115234 76115299 -43629599 + LTR24B LTR ERV1 23 76 -500 2144 147 0 6 chr13 76115499 76115813 -43629085 - AluSx SINE Alu 0 312 1 417 290 39 61 chr13 76115813 76115989 -43628909 + LTR24B LTR ERV1 344 515 -61 1801 172 13 20 chr13 76115989 76116291 -43628607 - AluJo SINE Alu -12 300 1 417 290 39 61 chr13 76116291 76116345 -43628553 + LTR24B LTR ERV1 515 569 -7 1274 72 0 0 chr13 76116380 76116532 -43628366 - AluY SINE Alu -159 152 1 251 83 0 133 chr13 76116532 76116592 -43628306 - AluJb SINE Alu -167 135 84 1120 191 0 61 chr13 76116593 76116824 -43628074 - AluJo SINE Alu -95 217 1 677 113 0 0 chr13 76116878 76116975 -43627923 - AluSg SINE Alu -16 293 197 1086 84 0 0 chr13 76116979 76117110 -43627788 - AluSg SINE Alu -179 131 1 2029 86 57 11 chr13 76117119 76117276 -43627622 - AluSp SINE Alu -21 292 115 2394 72 0 0 chr13 76117276 76117609 -43627289 - AluY SINE Alu 0 311 1 2029 86 57 11 chr13 76117609 76117730 -43627168 - AluSp SINE Alu -198 115 1 1560 117 22 102 chr13 76118138 76118462 -43626436 + AluJb SINE Alu 1 298 -4 489 62 0 0 chr13 76118464 76118529 -43626369 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 2497 73 3 6 chr13 76118539 76118852 -43626046 + AluSq SINE Alu 1 312 -1 780 310 23 13 chr13 76119569 76119862 -43625036 - MER93a LTR ERV1 -22 380 82 722 120 8 8 chr13 76119862 76119979 -43624919 + FLAM_C SINE Alu 1 117 -16 402 238 0 0 chr13 76120054 76120155 -43624743 - MER93a LTR ERV1 -301 101 1 836 143 0 0 chr13 76120511 76120644 -43624254 + FLAM_C SINE Alu 1 133 0 2257 103 0 3 chr13 76121235 76121527 -43623371 + AluSx SINE Alu 1 291 -21 2409 82 0 0 chr13 76121770 76122061 -43622837 + AluY SINE Alu 1 291 -20 1525 201 0 26 chr13 76122939 76123242 -43621656 - AluJo SINE Alu 0 312 18 1531 203 127 29 chr13 76123268 76123337 -43621561 - MER92B LTR ERV1 -31 605 544 2598 75 0 0 chr13 76123337 76123642 -43621256 + AluSg SINE Alu 1 305 -5 1531 203 127 29 chr13 76123642 76124098 -43620800 - MER92B LTR ERV1 -92 544 28 628 254 111 0 chr13 76124161 76124378 -43620520 + MER21B LTR ERV1 571 811 -52 1771 166 13 20 chr13 76124896 76125198 -43619700 - AluJb SINE Alu -12 300 1 363 206 127 55 chr13 76125316 76125421 -43619477 - L1MC2 LINE L1 -11 6333 6210 1670 152 8 4 chr13 76125421 76125685 -43619213 - AluJb SINE Alu -14 298 34 363 206 127 55 chr13 76125685 76125744 -43619154 - L1MC2 LINE L1 -134 6210 6157 418 263 42 0 chr13 76125786 76125904 -43618994 + L1M4 LINE L1 5144 5266 -880 659 242 52 60 chr13 76126302 76126661 -43618237 - MER31B LTR ERV1 0 466 4 1918 107 4 19 chr13 76126684 76126954 -43617944 - AluSg1 SINE Alu -1 308 43 2239 97 46 32 chr13 76126979 76127349 -43617549 - THE1C LTR MaLR 0 375 1 9514 102 37 52 chr13 76127349 76127671 -43617227 - THE1C-int LTR MaLR 0 1580 1255 2342 95 13 3 chr13 76127671 76127975 -43616923 + AluSg SINE Alu 1 307 -3 9514 102 37 52 chr13 76127975 76128741 -43616157 - THE1C-int LTR MaLR -325 1255 520 2131 107 7 0 chr13 76128741 76129046 -43615852 - AluSp SINE Alu 0 307 1 9514 102 37 52 chr13 76129046 76129559 -43615339 - THE1C-int LTR MaLR -1060 520 1 2468 95 24 8 chr13 76129559 76129928 -43614970 - THE1C LTR MaLR 0 375 1 607 152 31 16 chr13 76130111 76130296 -43614602 - L1M1 LINE L1 -709 5469 5313 480 200 88 24 chr13 76130302 76130427 -43614471 - FLAM_A SINE Alu 0 133 1 1831 181 3 0 chr13 76130480 76130778 -43614120 - AluJb SINE Alu -9 303 5 516 128 51 17 chr13 76130790 76130907 -43613991 - L1MB2 LINE L1 -2 6169 6049 680 259 86 47 chr13 76130921 76131083 -43613815 - L1M4 LINE L1 -5080 1462 1308 438 20 0 0 chr13 76131083 76131134 -43613764 + (TA)n Simple_repeat Simple_repeat 1 51 0 680 259 86 47 chr13 76131134 76131146 -43613752 - L1M4 LINE L1 -5234 1308 1298 2129 96 0 11 chr13 76131146 76131426 -43613472 - AluSg SINE Alu -30 280 4 680 259 86 47 chr13 76131426 76131659 -43613239 - L1M4 LINE L1 -5244 1298 1038 963 77 0 0 chr13 76131659 76131776 -43613122 - AluSg/x SINE Alu -8 304 188 291 339 22 50 chr13 76131811 76131991 -43612907 - L1M4 LINE L1 -5875 667 493 403 230 0 23 chr13 76132041 76132128 -43612770 + AluJb SINE Alu 113 197 -105 200 262 48 28 chr13 76132599 76132744 -43612154 + (CATA)n Simple_repeat Simple_repeat 4 151 0 215 165 38 51 chr13 76134785 76134864 -43610034 + (CACAA)n Simple_repeat Simple_repeat 3 80 0 210 37 0 0 chr13 76135118 76135145 -43609753 + (TG)n Simple_repeat Simple_repeat 1 27 0 2232 78 13 36 chr13 76135354 76135661 -43609237 - AluSx SINE Alu -12 300 1 607 271 129 8 chr13 76136480 76136975 -43607923 - L1MCa LINE L1 -2891 3535 2981 1299 92 43 0 chr13 76136976 76137160 -43607738 - AluSc SINE Alu -117 192 1 1284 121 44 111 chr13 76137160 76137475 -43607423 - MER39B LTR ERV1 -333 320 27 3016 188 45 40 chr13 76137627 76138041 -43606857 + L1M4c LINE L1 1594 2015 -4369 2310 106 0 19 chr13 76138041 76138353 -43606545 + AluSc SINE Alu 1 306 -3 3016 188 45 40 chr13 76138353 76138721 -43606177 + L1M4c LINE L1 2015 2380 -4004 1810 114 0 122 chr13 76138721 76139064 -43605834 - AluSx SINE Alu 0 302 2 445 255 78 14 chr13 76139068 76139209 -43605689 - L1M4 LINE L1 -1154 4992 4843 563 193 52 98 chr13 76139217 76139606 -43605292 - MSTD LTR MaLR 0 396 2 463 246 34 0 chr13 76139970 76140088 -43604810 + FLAM_A SINE Alu 17 138 -4 605 225 102 114 chr13 76140599 76140750 -43604148 - MER92B LTR ERV1 -144 492 341 2118 93 3 7 chr13 76140750 76141041 -43603857 + AluSx SINE Alu 5 294 -18 605 225 102 114 chr13 76141041 76141318 -43603580 - MER92B LTR ERV1 -295 341 68 1945 135 3 22 chr13 76141318 76141636 -43603262 - AluJb SINE Alu 0 312 1 605 225 102 114 chr13 76141636 76141704 -43603194 - MER92B LTR ERV1 -568 68 1 21 0 0 0 chr13 76141851 76141872 -43603026 + AT_rich Low_complexity Low_complexity 1 21 0 1717 172 14 0 chr13 76141877 76142167 -43602731 - AluJb SINE Alu -18 294 1 500 69 0 0 chr13 76142188 76142260 -43602638 - AluSc SINE Alu -1 308 237 708 257 99 27 chr13 76142375 76142610 -43602288 - L1MCa LINE L1 -3684 2742 2525 1936 120 13 3 chr13 76142610 76142909 -43601989 - AluSx SINE Alu -6 306 5 708 257 99 27 chr13 76142909 76143305 -43601593 - L1MCa LINE L1 -3901 2525 2065 276 127 95 0 chr13 76143325 76143388 -43601510 - L1MCa LINE L1 -4425 2001 1933 2144 60 37 10 chr13 76143607 76143905 -43600993 + AluY SINE Alu 1 306 -5 302 263 39 62 chr13 76144775 76144954 -43599944 - L1MCa LINE L1 -4621 1986 1812 1462 169 23 57 chr13 76145502 76145803 -43599095 - AluJo SINE Alu -10 292 2 1494 83 59 0 chr13 76145806 76146082 -43598816 - AluY SINE Alu 0 311 30 1244 163 254 0 chr13 76146524 76146800 -43598098 + MER101 LTR ERV1 23 368 -106 1706 105 127 4 chr13 76146903 76147170 -43597728 - AluY SINE Alu 0 301 2 2318 197 31 21 chr13 76147310 76147488 -43597410 + LTR45B LTR ERV1 3 178 -311 1858 148 13 3 chr13 76147488 76147786 -43597112 + AluSx SINE Alu 2 302 -10 2318 197 31 21 chr13 76147786 76148089 -43596809 + LTR45B LTR ERV1 178 489 0 2170 109 3 3 chr13 76148141 76148454 -43596444 + AluSp SINE Alu 1 313 0 739 79 0 20 chr13 76148713 76148814 -43596084 - AluY SINE Alu -211 100 2 23 0 0 0 chr13 76149245 76149268 -43595630 + AT_rich Low_complexity Low_complexity 1 23 0 309 347 0 12 chr13 76149777 76149944 -43594954 + (CCA)n Simple_repeat Simple_repeat 1 165 0 663 191 173 14 chr13 76150756 76150976 -43593922 - L1ME2 LINE L1 -244 5920 5666 1934 100 14 4 chr13 76150979 76151258 -43593640 - AluSc SINE Alu -12 297 16 206 333 21 0 chr13 76151259 76151352 -43593546 + GA-rich Low_complexity Low_complexity 2 96 0 269 250 36 42 chr13 76151624 76151792 -43593106 + A-rich Low_complexity Low_complexity 2 168 0 858 143 39 35 chr13 76151938 76152169 -43592729 - AluSg SINE Alu -77 233 2 1100 195 57 8 chr13 76152171 76152433 -43592465 + L1MB4 LINE L1 5895 6169 -11 982 283 81 39 chr13 76152454 76153317 -43591581 + L1ME LINE L1 1011 1909 -4487 2162 86 10 13 chr13 76153326 76153629 -43591269 + AluSp SINE Alu 1 302 -11 1106 234 94 52 chr13 76153706 76154113 -43590785 + L1ME LINE L1 4826 5214 -1021 2142 108 0 0 chr13 76154113 76154400 -43590498 - AluSx SINE Alu -10 302 16 1106 234 94 52 chr13 76154400 76154411 -43590487 + L1ME LINE L1 5214 5223 -1012 2398 67 3 0 chr13 76154411 76154711 -43590187 - AluSp SINE Alu -12 301 1 1106 234 94 52 chr13 76154711 76154945 -43589953 + L1ME LINE L1 5223 5446 -789 2359 65 0 0 chr13 76154945 76155239 -43589659 - AluY SINE Alu -16 295 2 1106 234 94 52 chr13 76155239 76155452 -43589446 + L1ME LINE L1 5446 5710 -525 3568 127 34 14 chr13 76155712 76155969 -43588929 + MER39B LTR ERV1 51 301 -352 2200 68 10 3 chr13 76155969 76156262 -43588636 + AluSc SINE Alu 1 295 -14 3568 127 34 14 chr13 76156262 76156595 -43588303 + MER39B LTR ERV1 301 653 0 2352 55 24 0 chr13 76156768 76157061 -43587837 + AluY SINE Alu 3 302 -9 1883 126 39 0 chr13 76157081 76157366 -43587532 + AluSx SINE Alu 11 306 -6 1964 124 0 16 chr13 76157442 76157748 -43587150 + AluSx SINE Alu 1 301 -11 1702 140 16 23 chr13 76158376 76158684 -43586214 - AluJb SINE Alu -6 306 1 757 167 0 49 chr13 76158739 76158883 -43586015 + FLAM_C SINE Alu 7 143 0 209 271 17 17 chr13 76158980 76159039 -43585859 - L2 LINE L2 -247 3066 3008 276 163 0 0 chr13 76159070 76159119 -43585779 + L1M4c LINE L1 281 329 -6317 2165 99 16 0 chr13 76159120 76159423 -43585475 + AluSg SINE Alu 1 308 -2 2039 88 14 10 chr13 76159440 76159735 -43585163 + AluSp SINE Alu 1 296 -17 727 235 104 69 chr13 76159925 76160126 -43584772 - MER21B LTR ERV1 -113 802 594 2253 94 7 0 chr13 76160126 76160425 -43584473 + AluSp SINE Alu 1 301 -12 727 235 104 69 chr13 76160425 76160558 -43584340 - MER21B LTR ERV1 -321 594 467 1298 219 63 25 chr13 76160708 76160758 -43584140 + MLT1A2-int LTR MaLR 1331 1378 -357 1927 83 31 0 chr13 76160758 76161046 -43583852 + AluSp SINE Alu 4 300 -13 1298 219 63 25 chr13 76161046 76161361 -43583537 + MLT1A2-int LTR MaLR 1378 1710 -25 606 225 8 8 chr13 76161387 76161516 -43583382 + MLT1A2 LTR MaLR 16 144 -230 2125 102 0 3 chr13 76161531 76161824 -43583074 + AluSc SINE Alu 3 294 -15 2391 55 0 0 chr13 76161876 76162169 -43582729 + AluY SINE Alu 1 293 -18 250 252 49 66 chr13 76162776 76163063 -43581835 - L1M1 LINE L1 -4433 1993 1729 1767 115 4 0 chr13 76163223 76163484 -43581414 + AluSx SINE Alu 39 300 -12 740 145 14 29 chr13 76164059 76164085 -43580813 + L1PA16 LINE L1 5805 5830 -336 1848 107 59 0 chr13 76164085 76164375 -43580523 + AluSx SINE Alu 1 307 -5 740 145 14 29 chr13 76164375 76164486 -43580412 + L1PA16 LINE L1 5830 5940 -226 372 229 149 38 chr13 76164595 76164847 -43580051 - HAL1 LINE L1 -1416 3305 863 802 144 41 7 chr13 76165016 76165162 -43579736 - AluSq/x SINE Alu -161 152 2 361 291 24 0 chr13 76165177 76165304 -43579594 + L1M4c LINE L1 820 949 -5593 2002 123 0 10 chr13 76165304 76165612 -43579286 + AluSx SINE Alu 3 307 -5 314 215 123 31 chr13 76165612 76165656 -43579242 + L1M4c LINE L1 2530 2569 -4075 2254 99 3 3 chr13 76165656 76165969 -43578929 + AluSp SINE Alu 1 313 0 314 215 123 31 chr13 76165969 76166054 -43578844 + L1M4c LINE L1 2569 2671 -3973 241 299 64 11 chr13 76166055 76166242 -43578656 + L1M4c LINE L1 2714 2910 -3915 2232 97 0 0 chr13 76166280 76166579 -43578319 - AluSx SINE Alu -13 299 1 570 239 39 110 chr13 76166592 76166643 -43578255 + L1M4c LINE L1 2885 2938 -3706 1656 140 0 70 chr13 76166643 76166957 -43577941 + AluJb SINE Alu 1 292 -20 570 239 39 110 chr13 76166957 76167160 -43577738 + L1M4c LINE L1 2938 3121 -3523 1924 93 10 21 chr13 76167164 76167475 -43577423 - THE1C LTR MaLR 0 375 1 606 265 59 23 chr13 76167478 76167697 -43577201 + L1M4c LINE L1 3124 3350 -3294 1764 117 0 11 chr13 76168143 76168416 -43576482 - AluJb SINE Alu -22 290 21 248 204 0 0 chr13 76168417 76168461 -43576437 - AluJb SINE Alu -259 44 1 2026 90 38 0 chr13 76168911 76169199 -43575699 + AluSx SINE Alu 1 299 -13 181 98 49 0 chr13 76169200 76169241 -43575657 + (TA)n Simple_repeat Simple_repeat 2 44 0 2349 80 0 0 chr13 76169254 76169566 -43575332 + AluSx SINE Alu 1 312 0 261 0 0 0 chr13 76169569 76169598 -43575300 + (TA)n Simple_repeat Simple_repeat 2 30 0 2010 89 21 3 chr13 76169718 76170009 -43574889 - AluSx SINE Alu -14 298 3 498 289 37 7 chr13 76170011 76170281 -43574617 - L1M4 LINE L1 -1179 4967 4690 1778 78 48 7 chr13 76170281 76170576 -43574322 - AluY SINE Alu -4 307 1 2125 102 0 3 chr13 76170628 76170921 -43573977 - AluSc SINE Alu -15 294 3 610 205 31 8 chr13 76170937 76171064 -43573834 - MLT1A2 LTR MaLR -230 144 15 1586 232 26 16 chr13 76171093 76171418 -43573480 - MLT1A2-int LTR MaLR -25 1710 1379 2305 80 3 0 chr13 76171418 76171717 -43573181 - AluSp SINE Alu -13 300 1 1586 232 26 16 chr13 76171717 76171770 -43573128 - MLT1A2-int LTR MaLR -356 1379 1328 240 292 0 0 chr13 76171917 76171982 -43572916 - MLT1A2-int LTR MaLR -994 741 677 1156 239 53 43 chr13 76172114 76172275 -43572623 - MLT1A2-int LTR MaLR -1077 658 500 2077 120 3 0 chr13 76172275 76172575 -43572323 - AluSx SINE Alu -11 301 1 1156 239 53 43 chr13 76172575 76172614 -43572284 - MLT1A2-int LTR MaLR -1235 500 463 2369 64 3 6 chr13 76172614 76172926 -43571972 - AluY SINE Alu 0 311 1 1156 239 53 43 chr13 76172926 76173193 -43571705 - MLT1A2-int LTR MaLR -1272 463 185 774 187 7 0 chr13 76173193 76173332 -43571566 - FLAM_C SINE Alu -2 141 2 489 254 34 123 chr13 76173385 76173450 -43571448 - MLT1A2 LTR MaLR -99 275 206 1965 143 0 3 chr13 76173450 76173750 -43571148 - AluJb SINE Alu -13 299 1 489 254 34 123 chr13 76173750 76173952 -43570946 - MLT1A2 LTR MaLR -168 206 21 883 266 196 27 chr13 76173975 76174200 -43570698 - L1M4 LINE L1 -845 5301 5115 2152 88 10 0 chr13 76174200 76174494 -43570404 - AluSx SINE Alu -13 299 3 883 266 196 27 chr13 76174494 76174775 -43570123 - L1M4 LINE L1 -1031 5115 4690 2333 65 3 13 chr13 76174775 76175085 -43569813 - AluY SINE Alu -3 308 2 883 266 196 27 chr13 76175085 76175134 -43569764 - L1M4 LINE L1 -1456 4690 4651 1812 313 45 34 chr13 76175600 76176609 -43568289 + Tigger7 DNA MER2_type 779 1804 -683 2267 80 0 3 chr13 76176609 76176908 -43567990 - AluY SINE Alu -13 298 1 1812 313 45 34 chr13 76176908 76177058 -43567840 + Tigger7 DNA MER2_type 1804 1951 -536 1297 164 68 12 chr13 76177480 76177730 -43567168 - MER2 DNA MER2_type -81 264 1 261 257 14 0 chr13 76179676 76179746 -43565152 + MER92A LTR ERV1 340 410 -2 2011 119 3 28 chr13 76180551 76180871 -43564027 + AluSx SINE Alu 1 312 0 2372 59 10 0 chr13 76181567 76181872 -43563026 - AluSp SINE Alu -5 308 1 198 0 0 0 chr13 76181872 76181894 -43563004 + (T)n Simple_repeat Simple_repeat 1 22 0 974 224 123 31 chr13 76182335 76182834 -43562064 + LTR26E LTR ERV1 7 593 0 21 36 0 0 chr13 76182885 76182913 -43561985 + GC_rich Low_complexity Low_complexity 1 28 0 2096 89 11 0 chr13 76184495 76184802 -43560096 - AluSp SINE Alu 0 310 1 829 147 0 8 chr13 76184893 76185022 -43559876 - FLAM_C SINE Alu -15 128 1 2110 185 14 36 chr13 76185321 76185513 -43559385 + Tigger2a DNA MER2_type 5 200 -2508 2414 62 0 7 chr13 76185513 76185817 -43559081 - AluY SINE Alu -9 302 1 2110 185 14 36 chr13 76185817 76186062 -43558836 + Tigger2a DNA MER2_type 200 432 -2 270 190 35 0 chr13 76186705 76186763 -43558135 + MER68 LTR ERV1 106 165 -397 653 220 30 0 chr13 76186771 76186903 -43557995 + AluJo SINE Alu 2 137 -175 1606 161 6 50 chr13 76186911 76187228 -43557670 + AluJb SINE Alu 10 312 0 204 40 0 0 chr13 76187234 76187259 -43557639 + (TA)n Simple_repeat Simple_repeat 1 25 0 1944 170 76 10 chr13 76187353 76187748 -43557150 + MSTC LTR MaLR 8 428 0 533 311 0 0 chr13 76187754 76187902 -43556996 + MER68 LTR ERV1 257 404 -158 2008 99 7 10 chr13 76188174 76188494 -43556404 + AluSc SINE Alu 1 309 0 2179 61 37 7 chr13 76188814 76189111 -43555787 - AluY SINE Alu -5 306 1 277 154 62 0 chr13 76189335 76189400 -43555498 + L1MCa LINE L1 1933 2001 -4425 927 253 75 27 chr13 76189425 76189829 -43555069 + L1MCa LINE L1 2069 2521 -3905 2086 126 0 7 chr13 76189829 76190138 -43554760 + AluSx SINE Alu 5 311 -1 927 253 75 27 chr13 76190138 76190415 -43554483 + L1MCa LINE L1 2521 2783 -3643 1357 211 22 40 chr13 76190424 76190747 -43554151 - MER54A LTR ERVL -438 463 147 489 170 21 21 chr13 76190755 76190849 -43554049 + LTR44 LTR ERV1 4 97 -422 2156 109 3 0 chr13 76190849 76191151 -43553747 - AluSp SINE Alu -10 303 1 1319 217 34 0 chr13 76191234 76191501 -43553397 + AluJo SINE Alu 12 287 -25 189 0 0 0 chr13 76191923 76191944 -43552954 + (A)n Simple_repeat Simple_repeat 1 21 0 2313 63 3 10 chr13 76191952 76192252 -43552646 + AluSp SINE Alu 1 298 -15 819 232 130 64 chr13 76192402 76192649 -43552249 - MER21B LTR ERV1 -73 858 517 2284 93 3 0 chr13 76192649 76192951 -43551947 + AluSp SINE Alu 1 303 -10 819 232 130 64 chr13 76192951 76193077 -43551821 - MER21B LTR ERV1 -414 517 401 2228 57 0 17 chr13 76193091 76193390 -43551508 - AluY SINE Alu -17 294 1 641 27 0 0 chr13 76193392 76193466 -43551432 - AluY SINE Alu -179 132 59 1316 101 0 0 chr13 76193468 76193657 -43551241 - AluY SINE Alu -121 190 2 598 245 19 32 chr13 76193748 76193903 -43550995 - MER21B LTR ERV1 -613 250 98 243 338 0 0 chr13 76193939 76194013 -43550885 - MER21B LTR ERV1 -767 96 23 2138 89 7 0 chr13 76194025 76194317 -43550581 + AluSc SINE Alu 15 308 -1 1581 171 24 0 chr13 76194340 76194627 -43550271 + AluJb SINE Alu 1 294 -18 21 0 0 0 chr13 76194632 76194653 -43550245 + AT_rich Low_complexity Low_complexity 1 21 0 297 180 20 0 chr13 76194863 76194913 -43549985 + Alu SINE Alu 1 51 -252 2328 84 0 0 chr13 76195318 76195616 -43549282 - AluSc SINE Alu -11 298 1 1706 189 3 3 chr13 76197078 76197385 -43547513 - AluJb SINE Alu -5 307 1 2361 80 0 3 chr13 76197395 76197707 -43547191 - AluY SINE Alu 0 311 1 781 211 14 7 chr13 76197862 76198009 -43546889 + FRAM SINE Alu 2 149 -27 1709 188 28 85 chr13 76198273 76198530 -43546368 + Tigger2a DNA MER2_type 4 274 -2434 1469 200 11 14 chr13 76198530 76198815 -43546083 + AluJo SINE Alu 1 284 -28 1709 188 28 85 chr13 76198815 76198916 -43545982 + Tigger2a DNA MER2_type 274 333 -2375 2012 128 10 3 chr13 76198916 76199214 -43545684 - AluSq SINE Alu -13 300 1 1709 188 28 85 chr13 76199214 76199311 -43545587 + Tigger2a DNA MER2_type 333 434 0 2432 67 0 10 chr13 76199313 76199625 -43545273 - AluY SINE Alu -2 309 1 2009 131 0 0 chr13 76199637 76199928 -43544970 - AluSx SINE Alu -21 291 1 1783 159 0 0 chr13 76200660 76200943 -43543955 + AluJb SINE Alu 3 285 -27 698 282 29 41 chr13 76200969 76201061 -43543837 + MER68 LTR ERV1 163 255 -307 1980 179 41 12 chr13 76201061 76201475 -43543423 + MSTC LTR MaLR 1 426 -2 698 282 29 41 chr13 76201475 76201627 -43543271 + MER68 LTR ERV1 255 404 -158 2207 101 0 3 chr13 76201773 76202079 -43542819 + AluSg SINE Alu 1 305 -5 543 278 14 1 chr13 76202627 76202802 -43542096 + L1M4c LINE L1 604 936 -5710 2253 71 7 0 chr13 76202806 76203101 -43541797 + AluY SINE Alu 1 297 -14 995 183 26 0 chr13 76203227 76203418 -43541480 + L1MB4 LINE L1 5823 6018 -162 577 301 53 23 chr13 76203587 76203849 -43541049 + L2 LINE L2 1829 2098 -1216 1545 113 33 30 chr13 76203905 76204205 -43540693 - AluSg SINE Alu -9 301 1 2046 203 42 23 chr13 76204342 76204519 -43540379 + LTR45B LTR ERV1 3 175 -314 1781 145 20 3 chr13 76204519 76204815 -43540083 + AluSx SINE Alu 2 302 -10 2046 203 42 23 chr13 76204815 76205115 -43539783 + LTR45B LTR ERV1 175 489 0 2029 110 16 0 chr13 76205167 76205475 -43539423 + AluSp SINE Alu 1 313 0 560 210 120 10 chr13 76205509 76205709 -43539189 + L1M4c LINE L1 1998 2219 -4425 857 240 146 3 chr13 76205712 76206054 -43538844 + L1M4c LINE L1 2261 2651 -3993 1957 59 0 0 chr13 76206057 76206296 -43538602 - AluY SINE Alu -15 296 58 1093 140 102 38 chr13 76206302 76206559 -43538339 + AluJb SINE Alu 42 312 0 399 280 58 12 chr13 76206564 76206763 -43538135 - L1MDa LINE L1 -3794 2746 2570 1490 98 0 0 chr13 76206763 76206957 -43537941 + AluSx SINE Alu 1 194 -118 1053 242 85 14 chr13 76206958 76207475 -43537423 + L1M4c LINE L1 3199 3752 -2892 2395 40 0 17 chr13 76207567 76207868 -43537030 + AluY SINE Alu 1 296 -15 1364 80 48 5 chr13 76208129 76208317 -43536581 + PABL_A LTR ERV1 1 196 -464 225 0 0 0 chr13 76208317 76208342 -43536556 + (T)n Simple_repeat Simple_repeat 1 25 0 1055 115 83 0 chr13 76208359 76208515 -43536383 - AluSx SINE Alu -143 169 1 472 234 113 46 chr13 76208517 76208756 -43536142 + L1MC4a LINE L1 6304 6558 -1250 256 95 119 0 chr13 76208956 76208998 -43535900 - MER4A LTR ERV1 0 664 618 3443 70 32 0 chr13 76209230 76209673 -43535225 + LTR22A LTR ERVK 2 458 0 1356 133 42 21 chr13 76209896 76210137 -43534761 - LTR43 LTR ERV1 0 602 357 2436 45 3 13 chr13 76210485 76210797 -43534101 - AluY SINE Alu -2 309 1 2705 96 40 0 chr13 76210797 76211172 -43533726 - LTR43 LTR ERV1 -212 390 1 2140 100 7 0 chr13 76211246 76211536 -43533362 - AluSc SINE Alu -17 292 1 303 264 13 48 chr13 76212382 76212569 -43532329 - L1MDa LINE L1 -4512 2028 1885 1333 167 3 59 chr13 76213117 76213405 -43531493 - AluJo SINE Alu -20 292 21 2175 71 14 0 chr13 76213420 76213738 -43531160 - AluY SINE Alu 0 311 1 529 194 15 52 chr13 76213740 76213874 -43531024 - FLAM_A SINE Alu -4 129 1 379 235 20 10 chr13 76214714 76214816 -43530082 - MER5A DNA MER1_type -78 111 9 1685 159 94 55 chr13 76215026 76215409 -43529489 - MER83 LTR ERV1 -1 447 50 661 148 0 19 chr13 76215408 76215516 -43529382 - MER83 LTR ERV1 -338 110 5 * 2187 83 7 0 chr13 76216932 76217232 -43527666 - AluY SINE Alu -9 302 1 533 311 0 0 chr13 76217504 76217652 -43527246 - MER68 LTR ERV1 -158 404 257 2040 170 65 10 chr13 76217658 76218057 -43526841 - MSTC LTR MaLR 0 428 8 204 40 0 0 chr13 76218152 76218177 -43526721 + (TA)n Simple_repeat Simple_repeat 1 25 0 1655 161 0 59 chr13 76218184 76218506 -43526392 - AluJb SINE Alu 0 312 10 663 226 23 0 chr13 76218514 76218647 -43526251 - AluJo SINE Alu -175 137 2 270 190 35 0 chr13 76218655 76218713 -43526185 - MER68 LTR ERV1 -397 165 106 1029 105 59 0 chr13 76219123 76219275 -43525623 - AluSx SINE Alu -151 161 1 1836 113 0 0 chr13 76219880 76220145 -43524753 - AluSx SINE Alu -9 303 39 261 258 47 68 chr13 76220307 76220601 -43524297 + L1M1 LINE L1 1729 2001 -4425 1435 78 82 0 chr13 76221206 76221463 -43523435 - AluY SINE Alu -18 293 16 1577 111 89 7 chr13 76221485 76221756 -43523142 - MER39B LTR ERV1 -358 295 3 1445 147 9 84 chr13 76222126 76222459 -43522439 + AluJo SINE Alu 2 309 -3 2025 115 16 22 chr13 76222815 76222952 -43521946 + AluSx SINE Alu 1 137 -175 2065 106 3 3 chr13 76222952 76223245 -43521653 + AluSx SINE Alu 1 293 -19 2025 115 16 22 chr13 76223245 76223421 -43521477 + AluSx SINE Alu 137 312 0 2015 138 0 3 chr13 76223837 76224148 -43520750 - AluJb SINE Alu -2 310 1 658 147 26 9 chr13 76225105 76225221 -43519677 + MER4B LTR ERV1 3 120 -490 1383 157 58 79 chr13 76225223 76225566 -43519332 - THE1C LTR MaLR 0 375 40 281 216 0 0 chr13 76225605 76225656 -43519242 - THE1C LTR MaLR -324 51 1 1524 115 63 76 chr13 76225659 76226062 -43518836 + MER4B LTR ERV1 121 563 -47 2123 99 3 0 chr13 76226062 76226354 -43518544 - AluSp SINE Alu -20 293 1 1524 115 63 76 chr13 76226354 76226402 -43518496 + MER4B LTR ERV1 563 610 0 543 227 95 41 chr13 76226607 76226849 -43518049 - L1MC4a LINE L1 -1250 6558 6304 1055 115 83 0 chr13 76226851 76227007 -43517891 + AluSx SINE Alu 1 169 -143 225 0 0 0 chr13 76227023 76227048 -43517850 + (A)n Simple_repeat Simple_repeat 1 25 0 902 84 76 0 chr13 76227048 76227179 -43517719 - PABL_B LTR ERV1 -461 206 66 2278 74 3 3 chr13 76227316 76227613 -43517285 + AluSc SINE Alu 2 298 -11 180 174 109 0 chr13 76228081 76228127 -43516771 - MER5A DNA MER1_type -105 84 34 2276 89 3 0 chr13 76228340 76228642 -43516256 + AluY SINE Alu 1 303 -8 541 213 15 37 chr13 76228655 76228791 -43516107 + MER68 LTR ERV1 2 134 -428 494 219 44 0 chr13 76228791 76228905 -43515993 + L1MCa LINE L1 199 317 -6109 787 164 0 0 chr13 76228905 76229027 -43515871 + FLAM_C SINE Alu 2 123 -20 752 214 64 5 chr13 76229060 76229247 -43515651 + L1MCa LINE L1 318 515 -5911 526 246 7 7 chr13 76229247 76229385 -43515513 + FLAM_C SINE Alu 2 139 -4 636 101 21 69 chr13 76229385 76229573 -43515325 + (GGGGA)n Simple_repeat Simple_repeat 1 179 0 705 152 43 113 chr13 76229600 76229684 -43515214 + L1MB4 LINE L1 4835 4923 -1223 1153 152 33 5 chr13 76229684 76229894 -43515004 + L1PA15 LINE L1 5949 6164 -1 705 152 43 113 chr13 76229894 76229940 -43514958 + L1MB4 LINE L1 4923 4971 -1175 1943 117 17 7 chr13 76229940 76230238 -43514660 + AluSx SINE Alu 1 301 -11 2557 40 0 0 chr13 76230241 76230542 -43514356 + AluY SINE Alu 1 301 -10 705 152 43 113 chr13 76230542 76230636 -43514262 + L1MB4 LINE L1 4973 5048 -1098 1780 160 121 22 chr13 76230637 76231078 -43513820 + LTR54B LTR ERV1 6 508 -2 364 253 17 0 chr13 76231081 76231202 -43513696 + L1MB4 LINE L1 5045 5170 -976 587 202 0 25 chr13 76231205 76231324 -43513574 + FRAM SINE Alu 39 154 -22 432 250 19 13 chr13 76231334 76231490 -43513408 + L1MB4 LINE L1 5173 5329 -817 1997 116 10 0 chr13 76231507 76231800 -43513098 + AluSx SINE Alu 1 296 -16 302 184 81 11 chr13 76231804 76231891 -43513007 - LTR54B LTR ERV1 -21 477 385 828 148 7 7 chr13 76231898 76232033 -43512865 - LTR23 LTR ERV1 0 437 303 916 192 0 16 chr13 76232038 76232220 -43512678 - AluJb SINE Alu -15 297 119 277 328 22 50 chr13 76232276 76232456 -43512442 + L1M4 LINE L1 493 667 -5875 816 93 0 17 chr13 76232491 76232609 -43512289 + AluSg/x SINE Alu 188 303 -9 398 260 87 24 chr13 76232616 76232824 -43512074 + L1M4 LINE L1 1047 1267 -5275 605 200 46 50 chr13 76232840 76233120 -43511778 + AluY SINE Alu 3 281 -30 993 113 0 0 chr13 76233127 76233277 -43511621 + (TA)n Simple_repeat Simple_repeat 2 151 0 2292 60 10 0 chr13 76234496 76234794 -43510104 - AluSc SINE Alu -4 305 5 1392 106 5 0 chr13 76235171 76235370 -43509528 - AluSg/x SINE Alu -5 307 108 612 109 15 109 chr13 76235556 76235693 -43509205 + MER4B LTR ERV1 1 124 -486 852 144 50 0 chr13 76235709 76235848 -43509050 + AluJb SINE Alu 154 299 -13 2239 216 25 4 chr13 76235850 76236363 -43508535 + L1MB4 LINE L1 5489 6012 -168 1894 120 3 33 chr13 76236402 76236701 -43508197 + AluSx SINE Alu 1 290 -22 950 170 0 22 chr13 76236714 76236896 -43508002 + AluJb SINE Alu 135 312 0 2249 96 0 3 chr13 76236901 76237202 -43507696 - AluSx SINE Alu -12 300 1 428 276 0 0 chr13 76237333 76237431 -43507467 - FLAM_C SINE Alu -7 126 29 1786 78 33 7 chr13 76237433 76237704 -43507194 + AluSc SINE Alu 1 278 -31 2205 93 0 3 chr13 76237704 76238003 -43506895 - AluSg SINE Alu -11 299 1 230 71 0 0 chr13 76238025 76238053 -43506845 - Alu SINE Alu -261 40 13 340 249 6 48 chr13 76238064 76238118 -43506780 + L1M4 LINE L1 2731 2786 -3858 2153 198 26 9 chr13 76238118 76238537 -43506361 + MSTB LTR MaLR 1 426 0 340 249 6 48 chr13 76238537 76238647 -43506251 + L1M4 LINE L1 2786 2888 -3756 553 68 0 0 chr13 76238669 76238743 -43506155 - L1MA3 LINE L1 -14 6291 6218 2296 78 55 72 chr13 76238743 76238806 -43506092 - THE1A LTR MaLR 0 355 292 2310 94 0 3 chr13 76238806 76239115 -43505783 + AluSg1 SINE Alu 1 308 -1 2296 78 55 72 chr13 76239115 76239412 -43505486 - THE1A LTR MaLR -63 292 1 12028 84 9 6 chr13 76239412 76240988 -43503910 - THE1A-int LTR MaLR 0 1580 1 2684 88 8 0 chr13 76240988 76241340 -43503558 - THE1A LTR MaLR 0 355 1 5488 112 28 24 chr13 76241340 76241777 -43503121 - L1MA3 LINE L1 -83 6222 5788 2363 70 0 7 chr13 76241777 76242091 -43502807 - AluY SINE Alu 0 312 1 5488 112 28 24 chr13 76242091 76242708 -43502190 - L1MA3 LINE L1 -517 5788 5164 1670 141 105 7 chr13 76242709 76242985 -43501913 - AluJb SINE Alu -9 303 1 5634 151 25 55 chr13 76242985 76243986 -43500912 - L1M1 LINE L1 -6484 1081 115 2244 104 3 3 chr13 76243986 76244283 -43500615 - AluSg SINE Alu -13 297 1 5634 151 25 55 chr13 76244283 76244390 -43500508 - L1M1 LINE L1 -7450 115 6 2419 92 13 0 chr13 76244434 76244739 -43500159 + AluSp SINE Alu 3 311 -2 638 217 0 0 chr13 76244983 76245098 -43499800 + FLAM_C SINE Alu 4 118 -15 2130 124 14 0 chr13 76245164 76245453 -43499445 + AluSx SINE Alu 1 293 -19 2616 44 0 13 chr13 76245453 76245768 -43499130 + AluY SINE Alu 1 311 0 2295 95 3 7 chr13 76245774 76246078 -43498820 + AluSc SINE Alu 1 303 -6 461 198 12 0 chr13 76246186 76246272 -43498626 - FLAM SINE Alu -17 126 40 1662 96 18 0 chr13 76246455 76246708 -43498190 - AluSp SINE Alu 0 346 90 2003 164 7 66 chr13 76246712 76247150 -43497748 + LTR3 LTR ERVK 5 416 -16 5595 98 31 29 chr13 76247173 76248077 -43496821 + HERVK3 LTR ERVK 2 907 -6336 2594 139 0 10 chr13 76248066 76248482 -43496416 + HERVK3 LTR ERVK 282 693 -6144 * 2432 50 3 59 chr13 76248501 76248822 -43496076 + AluSp SINE Alu 1 303 -10 804 200 32 0 chr13 76249134 76249289 -43495609 + HERVK3 LTR ERVK 2330 2489 -4348 470 118 0 13 chr13 76249697 76249773 -43495125 + HERVK3 LTR ERVK 3474 3548 -3289 * 894 116 0 84 chr13 76249769 76249912 -43494986 + HERVK3 LTR ERVK 2027 2180 -4657 2392 53 0 0 chr13 76249912 76250218 -43494680 - AluY SINE Alu 0 306 1 894 116 0 84 chr13 76250218 76250276 -43494622 + HERVK3 LTR ERVK 2180 3807 -3030 * 2610 93 20 47 chr13 76250272 76250677 -43494221 + HERVK3 LTR ERVK 2455 2848 -4395 1926 75 108 0 chr13 76250677 76250945 -43493953 + AluY SINE Alu 1 297 -14 2610 93 20 47 chr13 76250945 76250988 -43493910 + HERVK3 LTR ERVK 2848 2891 -4352 1468 69 0 0 chr13 76250995 76251184 -43493714 + HERVK3 LTR ERVK 4119 4307 -2936 * 4098 135 11 1 chr13 76251183 76251851 -43493047 + HERVK3 LTR ERVK 4685 5358 -1885 669 106 0 0 chr13 76251870 76251964 -43492934 + HERVK3 LTR ERVK 7150 7243 0 1947 174 16 45 chr13 76251968 76252393 -43492505 + LTR3 LTR ERVK 5 417 -15 740 85 0 0 chr13 76252406 76252500 -43492398 - AluS SINE Alu -218 95 2 2075 131 3 28 chr13 76253266 76253586 -43491312 + AluSq SINE Alu 2 313 0 797 311 25 3 chr13 76253848 76254205 -43490693 + MER90 LTR ERV1 70 434 -180 2038 98 4 11 chr13 76254221 76254497 -43490401 + AluSg SINE Alu 1 274 -36 1261 107 70 0 chr13 76254782 76254997 -43489901 + AluSg/x SINE Alu 73 302 -8 506 277 16 1 chr13 76255531 76255704 -43489194 + L1M4c LINE L1 604 936 -5710 2462 82 0 0 chr13 76255707 76256000 -43488898 + AluSg SINE Alu 1 293 -17 1556 112 13 0 chr13 76256003 76256227 -43488671 + L1PA16 LINE L1 5929 6155 -11 1500 213 0 41 chr13 76256368 76256683 -43488215 - AluJo SINE Alu -9 303 2 1919 185 68 31 chr13 76257045 76257489 -43487409 + LTR2B LTR ERV1 31 490 0 304 235 17 126 chr13 76257841 76257890 -43487008 - MER5A DNA MER1_type -80 109 79 2437 81 0 3 chr13 76257890 76258188 -43486710 + AluSq SINE Alu 1 297 -16 304 235 17 126 chr13 76258188 76258257 -43486641 - MER5A DNA MER1_type -110 79 4 369 318 185 19 chr13 76258258 76258582 -43486316 - L2 LINE L2 -462 2852 2475 226 336 9 36 chr13 76258694 76258804 -43486094 - L2 LINE L2 -190 3082 2976 821 295 93 53 chr13 76258823 76259146 -43485752 - L2 LINE L2 -826 2488 2179 2345 103 0 10 chr13 76259146 76259456 -43485442 + AluSg SINE Alu 1 307 -3 821 295 93 53 chr13 76259456 76259769 -43485129 - L2 LINE L2 -1135 2179 1827 1667 210 20 18 chr13 76259941 76260332 -43484566 - L1MB4 LINE L1 -162 6018 5627 242 56 28 0 chr13 76260434 76260470 -43484428 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 2383 94 3 7 chr13 76260554 76260861 -43484037 + AluSp SINE Alu 1 306 -7 2657 52 0 0 chr13 76261089 76261398 -43483500 + AluY SINE Alu 1 309 -2 1129 172 0 21 chr13 76261407 76261593 -43483305 + AluJb SINE Alu 121 302 -10 579 248 8 0 chr13 76261902 76262023 -43482875 - FLAM_A SINE Alu -4 138 17 961 210 147 57 chr13 76262394 76262728 -43482170 + MLT1A1 LTR MaLR 2 365 0 441 282 56 0 chr13 76262737 76262879 -43482019 + L1M4 LINE L1 4843 4992 -1154 1466 118 0 10 chr13 76262883 76263086 -43481812 + AluSx SINE Alu 2 202 -110 777 154 66 0 chr13 76263086 76263222 -43481676 + AluSg/x SINE Alu 155 299 -11 4199 175 58 36 chr13 76263222 76263586 -43481312 - L1M4c LINE L1 -4004 2380 2025 2103 104 16 19 chr13 76263586 76263893 -43481005 - AluSc SINE Alu -3 306 1 4199 175 58 36 chr13 76263893 76264283 -43480615 - L1M4c LINE L1 -4359 2025 1645 632 228 0 8 chr13 76264283 76264406 -43480492 - FLAM_A SINE Alu -8 125 4 4199 175 58 36 chr13 76264406 76264780 -43480118 - L1M4c LINE L1 -4739 1645 1227 1199 183 104 69 chr13 76264781 76265035 -43479863 - MER54A LTR ERVL -569 332 63 2428 83 0 10 chr13 76265035 76265349 -43479549 - AluY SINE Alu 0 311 1 1199 183 104 69 chr13 76265349 76265411 -43479487 - MER54A LTR ERVL -838 63 5 891 211 25 0 chr13 76265413 76265612 -43479286 - L1M4c LINE L1 -6120 264 61 2395 84 7 0 chr13 76265613 76265909 -43478989 - AluSp SINE Alu -15 298 1 2187 101 24 0 chr13 76265926 76266224 -43478674 - AluSg SINE Alu -2 308 4 1354 226 81 25 chr13 76266392 76266751 -43478147 + MSTC LTR MaLR 1 385 -43 1857 162 13 7 chr13 76266751 76267054 -43477844 - AluSx SINE Alu -7 305 1 1354 226 81 25 chr13 76267054 76267088 -43477810 + MSTC LTR MaLR 385 416 -12 402 296 0 15 chr13 76267092 76267224 -43477674 + MER68 LTR ERV1 250 379 -183 1399 178 21 3 chr13 76267229 76267581 -43477317 + L1PA15-16 LINE L1 1967 2325 -3821 2626 133 33 19 chr13 76267585 76268006 -43476892 + MSTA LTR MaLR 2 428 0 1710 123 34 37 chr13 76268007 76268333 -43476565 + MSTA-int LTR MaLR 1 325 -1326 1118 131 11 23 chr13 76268334 76268510 -43476388 - AluSg/x SINE Alu -18 294 121 1696 169 55 136 chr13 76268510 76269071 -43475827 + MER21A LTR ERV1 41 556 -375 2265 116 0 10 chr13 76269071 76269382 -43475516 + AluSx SINE Alu 1 308 -4 818 123 53 0 chr13 76269393 76269507 -43475391 + FLAM_C SINE Alu 6 125 -18 1253 211 64 53 chr13 76269524 76269899 -43474999 + MER21B LTR ERV1 485 863 0 6175 79 14 48 chr13 76270441 76272116 -43472782 + SVA Other Other 1 1386 0 2359 100 3 0 chr13 76272193 76272493 -43472405 + AluSp SINE Alu 1 301 -12 182 375 11 11 chr13 76272494 76272582 -43472316 - MIR SINE MIR -84 124 37 2305 81 11 0 chr13 76272766 76273050 -43471848 - AluSx SINE Alu -4 308 22 2219 92 6 58 chr13 76275026 76275354 -43469544 + AluSq SINE Alu 1 311 -2 800 253 68 12 chr13 76275568 76275966 -43468932 + L1M4c LINE L1 2309 2727 -3655 2425 82 0 10 chr13 76275988 76276291 -43468607 + AluSp SINE Alu 1 300 -13 2545 78 0 0 chr13 76276293 76276602 -43468296 + AluY SINE Alu 1 309 -2 589 150 10 55 chr13 76276605 76276752 -43468146 + L1MB7 LINE L1 5598 5742 -427 22 0 0 0 chr13 76276790 76276812 -43468086 + AT_rich Low_complexity Low_complexity 1 22 0 437 207 36 0 chr13 76276836 76276947 -43467951 + L1MB7 LINE L1 5761 5875 -309 228 217 0 43 chr13 76377651 76377715 -43367183 + MIR SINE MIR 37 94 -114 460 345 219 23 chr13 76377730 76378677 -43366221 + L2 LINE L2 1633 2764 -550 243 295 144 58 chr13 76378867 76379006 -43365892 + L2 LINE L2 3121 3271 -1 205 205 0 0 chr13 76379457 76379496 -43365402 + T-rich Low_complexity Low_complexity 1 39 0 271 321 36 36 chr13 76379607 76379747 -43365151 + MIR SINE MIR 5 144 -118 2589 203 4 8 chr13 76379759 76380236 -43364662 + MER70B LTR ERVL 1 475 -103 496 240 20 27 chr13 76380400 76380546 -43364352 + Charlie7 DNA MER1_type 408 552 -2060 560 281 92 4 chr13 76380684 76380922 -43363976 - MIR SINE MIR 0 262 4 1808 169 50 67 chr13 76381016 76381435 -43363463 + MER34B LTR ERV1 14 425 -140 696 240 12 114 chr13 76381437 76381683 -43363215 - MLT1E3 LTR MaLR -121 503 288 349 300 54 15 chr13 76381717 76381839 -43363059 - MLT1E3 LTR MaLR -503 151 25 356 83 0 50 chr13 76381839 76381899 -43362999 - MLT2B1 LTR ERVL 0 520 464 204 188 0 0 chr13 76381899 76381931 -43362967 + (CA)n Simple_repeat Simple_repeat 1 32 0 227 238 32 16 chr13 76381954 76382017 -43362881 + MIR SINE MIR 81 144 -118 207 0 0 0 chr13 76382029 76382052 -43362846 + (GA)n Simple_repeat Simple_repeat 2 24 0 2250 219 9 5 chr13 76382059 76382480 -43362418 - MLT2B3 LTR ERVL -60 494 72 405 136 0 0 chr13 76382572 76382631 -43362267 - MLT2B3 LTR ERVL -495 59 1 1936 160 0 7 chr13 76383491 76383797 -43361101 + AluJb SINE Alu 1 304 -8 409 308 113 41 chr13 76383816 76384283 -43360615 + L1M4 LINE L1 2405 2905 -3241 1657 191 3 20 chr13 76384288 76384587 -43360311 + AluJb SINE Alu 3 296 -16 2386 153 21 21 chr13 76384598 76385063 -43359835 + L1 LINE L1 4815 5279 -867 1377 223 47 113 chr13 76385176 76385977 -43358921 + LTR8A LTR ERV1 1 727 0 1316 183 153 0 chr13 76386219 76386481 -43358417 - AluJo SINE Alu 0 302 1 383 296 244 16 chr13 76387036 76387549 -43357349 + L1ME4a LINE L1 5366 5995 -126 2199 116 0 0 chr13 76387550 76387844 -43357054 - AluSc SINE Alu -15 294 1 834 243 0 0 chr13 76388317 76388486 -43356412 - FRAM SINE Alu -8 168 1 316 299 63 31 chr13 76389318 76389474 -43355424 - MER5A DNA MER1_type -13 176 1 3632 63 0 0 chr13 76390935 76391413 -43353485 - L1PA5 LINE L1 -1049 5097 4620 7331 42 3 6 chr13 76391413 76392485 -43352413 + L1PA5 LINE L1 5084 6154 0 406 291 0 0 chr13 76392508 76392618 -43352280 + MIR SINE MIR 95 204 -58 214 214 24 0 chr13 76392621 76392705 -43352193 + (TATG)n Simple_repeat Simple_repeat 1 86 0 23 33 0 0 chr13 76392708 76392738 -43352160 + AT_rich Low_complexity Low_complexity 1 30 0 11498 102 29 0 chr13 76394438 76396174 -43348724 - L1PA8 LINE L1 -698 5433 3647 5149 109 3 3 chr13 76396174 76396916 -43347982 + L1PA8 LINE L1 5429 6170 -2 21 0 0 0 chr13 76397943 76397964 -43346934 + AT_rich Low_complexity Low_complexity 1 21 0 24 24 0 24 chr13 76399128 76399148 -43345750 + AT_rich Low_complexity Low_complexity 1 20 -21 1999 174 11 19 chr13 76399148 76399516 -43345382 + MLT1A1 LTR MaLR 1 365 0 24 24 0 24 chr13 76399516 76399537 -43345361 + AT_rich Low_complexity Low_complexity 20 41 0 681 298 103 32 chr13 76399742 76400151 -43344747 - L2 LINE L2 -832 2482 2045 290 383 17 11 chr13 76400170 76400350 -43344548 - L2 LINE L2 -1167 2147 1967 332 338 122 40 chr13 76400613 76401131 -43343767 - L2 LINE L2 -2190 1124 565 231 253 114 0 chr13 76401509 76401588 -43343310 + MLT1F LTR MaLR 319 406 -136 335 347 89 5 chr13 76402010 76402223 -43342675 - L2 LINE L2 -2553 761 531 402 85 0 0 chr13 76402604 76402663 -43342235 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 253 301 39 0 chr13 76403047 76403150 -43341748 - MIR3 SINE MIR -5 203 97 180 158 0 0 chr13 76403702 76403740 -43341158 + T-rich Low_complexity Low_complexity 1 38 0 2383 223 53 65 chr13 76403938 76404321 -43340577 - L1ME1 LINE L1 -4 6162 5776 2449 82 0 0 chr13 76404321 76404624 -43340274 - AluY SINE Alu -8 303 1 2383 223 53 65 chr13 76404624 76405028 -43339870 - L1ME1 LINE L1 -390 5776 5384 13943 128 40 25 chr13 76405287 76407669 -43337229 - Tigger1 DNA MER2_type 0 2418 1 225 289 12 60 chr13 76409985 76410068 -43334830 - L2 LINE L2 0 3272 3194 237 337 94 17 chr13 76410121 76410302 -43334596 - L2 LINE L2 -2519 795 601 312 218 23 23 chr13 76410938 76411025 -43333873 - MER69 DNA AcHobo -3 2523 2437 7318 41 2 1 chr13 76411520 76412541 -43332357 + L1PA4 LINE L1 5134 6155 0 24 32 0 0 chr13 76412594 76412625 -43332273 + AT_rich Low_complexity Low_complexity 1 31 0 1401 273 102 30 chr13 76412872 76413370 -43331528 + L3 LINE CR1 958 1491 -86 22 0 0 0 chr13 76414157 76414179 -43330719 + AT_rich Low_complexity Low_complexity 1 22 0 271 329 144 28 chr13 76414441 76414948 -43329950 - L2 LINE L2 -928 2386 1821 2012 144 79 15 chr13 76415004 76415344 -43329554 + THE1B LTR MaLR 1 362 -2 1289 168 0 9 chr13 76415399 76415613 -43329285 - AluJb SINE Alu -14 298 87 448 266 7 43 chr13 76415825 76415964 -43328934 - LTR33 LTR ERVL -357 164 31 506 303 37 20 chr13 76415964 76416208 -43328690 + L2 LINE L2 834 1081 -2233 1748 224 54 11 chr13 76416208 76416651 -43328247 - MLT1C LTR MaLR 0 467 6 1892 309 32 30 chr13 76416656 76417434 -43327464 + L2 LINE L2 1077 1856 -1458 587 242 124 11 chr13 76417434 76417620 -43327278 + MIR SINE MIR 11 217 -45 1547 145 0 0 chr13 76417730 76417951 -43326947 + AluSx SINE Alu 1 221 -91 1622 223 86 84 chr13 76418218 76418869 -43326029 - MLT1E1 LTR MaLR -2 652 1 520 328 97 20 chr13 76418902 76419347 -43325551 + L1MC4a LINE L1 5442 5920 -1888 24 77 0 0 chr13 76419481 76419533 -43325365 + AT_rich Low_complexity Low_complexity 1 52 0 310 243 111 22 chr13 76419637 76419853 -43325045 + L1ME4a LINE L1 5611 5844 -302 1955 124 25 0 chr13 76420727 76420846 -43324052 + AluSq SINE Alu 1 116 -197 195 69 0 0 chr13 76420846 76420875 -43324023 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1955 124 25 0 chr13 76420875 76421037 -43323861 + AluSq SINE Alu 116 289 -24 1231 226 52 86 chr13 76421111 76421712 -43323186 - L1MD3 LINE L1 -30 7950 7248 404 262 28 28 chr13 76421715 76421822 -43323076 - MLT1F1 LTR MaLR -423 144 38 520 199 76 0 chr13 76421822 76421953 -43322945 - L1MC3 LINE L1 -707 7078 6938 1008 222 122 57 chr13 76421960 76422239 -43322659 - AluJb SINE Alu -5 297 1 327 320 138 14 chr13 76425120 76425395 -43319503 - MER102b DNA MER1_type -24 317 9 24 53 0 0 chr13 76426203 76426241 -43318657 + AT_rich Low_complexity Low_complexity 1 38 0 936 45 0 0 chr13 76427353 76427464 -43317434 - AluY SINE Alu -13 298 188 1294 225 3 90 chr13 76427498 76427844 -43317054 + MLT1B LTR MaLR 1 316 -74 1244 189 37 57 chr13 76427846 76428142 -43316756 + MLT2D LTR ERVL 125 414 0 519 293 44 5 chr13 76428167 76428372 -43316526 - MIR SINE MIR -4 258 46 3329 79 17 6 chr13 76431141 76431611 -43313287 - L1PA11 LINE L1 -3 6171 5697 727 115 0 0 chr13 76431612 76431716 -43313182 - L1PA11 LINE L1 -629 5545 5442 27 73 0 0 chr13 76431716 76431771 -43313127 + AT_rich Low_complexity Low_complexity 1 55 0 240 196 54 45 chr13 76433182 76433294 -43311604 + L1ME4a LINE L1 6001 6113 -8 3007 249 119 73 chr13 76433550 76434970 -43309928 + Charlie7 DNA MER1_type 254 1811 -801 1633 189 11 3 chr13 76434970 76435256 -43309642 - AluJo SINE Alu -24 288 1 3007 249 119 73 chr13 76435256 76436026 -43308872 + Charlie7 DNA MER1_type 1811 2544 -68 819 290 68 0 chr13 76436969 76437276 -43307622 + L1ME3A LINE L1 5508 5835 -335 327 239 77 135 chr13 76437393 76437652 -43307246 + L1ME3A LINE L1 5762 6005 -165 470 266 44 13 chr13 76437740 76437898 -43307000 - MLT1J LTR MaLR -92 419 257 388 176 0 0 chr13 76438577 76438645 -43306253 - AluS SINE Alu -2 299 232 1084 111 0 0 chr13 76438645 76438789 -43306109 - AluSq/x SINE Alu -168 144 1 243 225 67 45 chr13 76439308 76439397 -43305501 + MIR SINE MIR 100 190 -72 293 332 19 77 chr13 76440162 76440207 -43304691 - MIR3 SINE MIR -9 199 153 391 189 13 192 chr13 76440207 76440519 -43304379 - MER112 DNA MER1_type 0 256 1 293 332 19 77 chr13 76440519 76440681 -43304217 - MIR3 SINE MIR -55 153 4 1702 143 50 18 chr13 76440731 76441010 -43303888 + AluJo SINE Alu 1 288 -24 1590 249 81 37 chr13 76441128 76441694 -43303204 + MLT1E LTR MaLR 3 593 0 1750 154 51 43 chr13 76441898 76442269 -43302629 + THE1C LTR MaLR 2 375 0 3000 167 71 25 chr13 76442291 76442679 -43302219 + L1MB7 LINE L1 5488 5919 -265 351 0 0 0 chr13 76442679 76442718 -43302180 + (TA)n Simple_repeat Simple_repeat 1 39 0 3000 167 71 25 chr13 76442718 76442977 -43301921 + L1MB7 LINE L1 5919 6165 -19 3268 184 30 63 chr13 76443718 76444572 -43300326 - LTR1B LTR ERV1 0 826 1 211 187 29 28 chr13 76444846 76444909 -43299989 + GA-rich Low_complexity Low_complexity 5 51 0 199 302 73 21 chr13 76445169 76445265 -43299633 + L2 LINE L2 2963 3063 -209 595 255 185 5 chr13 76445637 76445837 -43299061 + MIR SINE MIR 23 258 -4 256 335 67 52 chr13 76446531 76446859 -43298039 + L2 LINE L2 2373 2705 -609 194 299 78 0 chr13 76447080 76447157 -43297741 + L2 LINE L2 2977 3059 -213 275 356 30 0 chr13 76447264 76447365 -43297533 - L2 LINE L2 0 3272 3169 215 300 0 0 chr13 76447506 76447556 -43297342 + L2 LINE L2 3243 3292 -21 525 296 139 11 chr13 76448355 76448642 -43296256 + MLT1L LTR MaLR 66 389 -226 238 246 16 0 chr13 76448710 76448771 -43296127 + MLT1L LTR MaLR 547 608 -7 1456 274 16 0 chr13 76448948 76449321 -43295577 + L1MDb LINE L1 6 384 -6025 * 1839 205 50 75 chr13 76449317 76449854 -43295044 + L1MD2 LINE L1 5836 6359 0 2072 120 7 0 chr13 76451421 76451712 -43293186 + AluSx SINE Alu 1 293 -19 2016 102 42 0 chr13 76452853 76453137 -43291761 - AluSx SINE Alu -16 296 1 357 292 81 6 chr13 76453812 76453973 -43290925 - L1M4 LINE L1 -2202 4755 4583 674 254 83 0 chr13 76454646 76454827 -43290071 - MIR SINE MIR 0 262 67 230 296 97 42 chr13 76455021 76455329 -43289569 + HAL1b LINE L1 65 389 -959 673 232 7 0 chr13 76455525 76455663 -43289235 - L1M4 LINE L1 -5810 1049 911 302 227 76 50 chr13 76455658 76455777 -43289121 + HAL1b LINE L1 385 506 -842 * 281 297 14 43 chr13 76455851 76455989 -43288909 + HAL1b LINE L1 650 783 -565 457 308 159 16 chr13 76456296 76456611 -43288287 + L1MC4a LINE L1 5554 5913 -1895 225 0 0 0 chr13 76456937 76456962 -43287936 + (T)n Simple_repeat Simple_repeat 1 25 0 367 299 136 0 chr13 76457194 76457348 -43287550 - MLT1J LTR MaLR -19 492 318 270 0 0 0 chr13 76458101 76458131 -43286767 + (TG)n Simple_repeat Simple_repeat 2 31 0 203 376 11 43 chr13 76458455 76458641 -43286257 + MIR3 SINE MIR 17 196 -12 222 37 0 0 chr13 76459815 76459842 -43285056 + (T)n Simple_repeat Simple_repeat 1 27 0 776 241 17 6 chr13 76460095 76460269 -43284629 + LTR28 LTR ERV1 1 176 -844 547 248 134 13 chr13 76460300 76460603 -43284295 + MER52A LTR ERV1 271 1305 -137 23 0 0 0 chr13 76460861 76460884 -43284014 + AT_rich Low_complexity Low_complexity 1 23 0 618 257 69 30 chr13 76461520 76461827 -43283071 - L1MC4a LINE L1 -343 5819 5711 342 204 23 45 chr13 76461877 76461965 -43282933 - MLT1H1 LTR MaLR 0 555 470 447 327 12 6 chr13 76461984 76462149 -43282749 - MLT1H1 LTR MaLR -188 367 202 5718 215 68 49 chr13 76463042 76464623 -43280275 + L1MB2 LINE L1 3295 4845 -1339 978 222 116 106 chr13 76464623 76465123 -43279775 - MLT1D LTR MaLR 0 505 1 5718 215 68 49 chr13 76465123 76465172 -43279726 + L1MB2 LINE L1 4845 4892 -1292 4054 135 33 23 chr13 76465172 76465440 -43279458 - L1PA15 LINE L1 0 6165 5901 512 75 12 25 chr13 76465440 76465520 -43279378 + MADE1 DNA Mariner 2 80 0 4054 135 33 23 chr13 76465520 76465745 -43279153 - L1PA15 LINE L1 -264 5901 5661 2495 63 0 0 chr13 76465745 76466048 -43278850 - AluY SINE Alu -7 304 2 4054 135 33 23 chr13 76466048 76466247 -43278651 - L1PA15 LINE L1 -504 5661 5465 5718 215 68 49 chr13 76466247 76467389 -43277509 + L1MB2 LINE L1 4892 6164 -20 23 0 0 0 chr13 76467389 76467412 -43277486 + AT_rich Low_complexity Low_complexity 1 23 0 282 29 0 0 chr13 76468457 76468492 -43276406 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 351 0 0 0 chr13 76468491 76468530 -43276368 + (GA)n Simple_repeat Simple_repeat 2 40 0 1970 277 110 53 chr13 76468540 76469318 -43275580 + L1M4b LINE L1 21 753 -6102 189 26 51 26 chr13 76469318 76469357 -43275541 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1970 277 110 53 chr13 76469357 76470407 -43274491 + L1M4b LINE L1 753 1915 -4940 22041 77 15 1 chr13 76470433 76474298 -43270600 + L1PA6 LINE L1 2250 6139 -15 338 205 12 0 chr13 76474299 76474382 -43270516 + (CATA)n Simple_repeat Simple_repeat 2 85 0 2171 92 0 3 chr13 76474411 76474716 -43270182 + AluY SINE Alu 1 304 0 6381 84 36 0 chr13 76474940 76475938 -43268960 - L1PA10 LINE L1 -11 6157 5142 1742 230 115 37 chr13 76475951 76476184 -43268714 + L1ME1 LINE L1 5455 5668 -498 1869 159 3 3 chr13 76476184 76476486 -43268412 + AluJb SINE Alu 1 302 -10 1742 230 115 37 chr13 76476486 76476825 -43268073 + L1ME1 LINE L1 5668 6072 -94 422 188 69 10 chr13 76476825 76476926 -43267972 - LTR65 LTR ERV1 -401 268 162 336 311 36 56 chr13 76476979 76477175 -43267723 + L1 LINE L1 3478 3669 -2477 478 280 61 8 chr13 76477267 76477399 -43267499 - MIR SINE MIR -113 149 11 214 294 0 71 chr13 76477383 76477468 -43267430 + L2 LINE L2 3227 3305 -8 * 21 57 0 0 chr13 76477580 76477615 -43267283 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 76477662 76477690 -43267208 + AT_rich Low_complexity Low_complexity 1 28 0 2009 126 13 10 chr13 76477717 76478027 -43266871 + AluSx SINE Alu 1 311 -1 575 301 48 35 chr13 76478822 76479051 -43265847 + MIR SINE MIR 28 259 -3 437 300 65 15 chr13 76479069 76479269 -43265629 + L1ME LINE L1 5545 5754 -367 2169 286 52 59 chr13 76479355 76480129 -43264769 + L1MEc LINE L1 469 1232 -5593 1503 138 0 27 chr13 76480129 76480354 -43264544 + AluSx SINE Alu 1 219 -93 2169 286 52 59 chr13 76480354 76480778 -43264120 + L1MEc LINE L1 1232 1658 -5167 987 89 0 14 chr13 76480784 76480930 -43263968 + AluSc SINE Alu 166 309 0 365 260 34 16 chr13 76480985 76481193 -43263705 + L1MEc LINE L1 1549 1858 -4786 305 250 50 25 chr13 76481193 76481273 -43263625 + L1MEc LINE L1 1736 1817 -4827 484 231 12 0 chr13 76481273 76481398 -43263500 + L1MB1 LINE L1 5476 5604 -687 * 5153 122 44 13 chr13 76481387 76482142 -43262756 + L1MA3 LINE L1 2273 3150 -4415 2046 128 0 26 chr13 76482142 76482447 -43262451 + AluSc SINE Alu 1 297 -12 5153 122 44 13 chr13 76482447 76482808 -43262090 + L1MA3 LINE L1 3150 3498 -4067 240 111 0 0 chr13 76482808 76482844 -43262054 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 392 176 0 99 chr13 76482849 76482991 -43261907 + G-rich Low_complexity Low_complexity 5 132 0 13871 182 33 9 chr13 76482992 76487159 -43257739 + L1MA3 LINE L1 3462 7724 0 556 266 99 34 chr13 76487166 76487550 -43257348 + L1MC5 LINE L1 7508 7916 -45 804 174 128 64 chr13 76487568 76487787 -43257111 + L1MB1 LINE L1 5935 6167 -1 300 154 0 0 chr13 76487810 76487862 -43257036 + (TA)n Simple_repeat Simple_repeat 1 52 0 697 268 7 33 chr13 76487863 76488135 -43256763 + L1MEc LINE L1 2028 2292 -4533 5179 209 49 18 chr13 76488157 76489483 -43255415 + L1M3 LINE L1 4003 5369 -777 399 74 0 0 chr13 76489479 76489533 -43255365 + L1M3 LINE L1 5596 5649 -522 * 351 160 53 0 chr13 76489533 76489600 -43255298 + L1MA9 LINE L1 6233 6311 -1 4704 264 112 10 chr13 76489600 76490888 -43254010 + L1MEc LINE L1 2283 3439 -3205 207 0 0 0 chr13 76490888 76490911 -43253987 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4704 264 112 10 chr13 76490911 76492140 -43252758 + L1MEc LINE L1 3439 5018 -1626 3034 159 16 17 chr13 76492195 76492712 -43252186 - MER34 LTR ERV1 0 542 27 1039 213 82 73 chr13 76492724 76493078 -43251820 + L1MEc LINE L1 5035 5384 -1260 2201 107 3 7 chr13 76493078 76493377 -43251521 + AluSp SINE Alu 1 298 -15 1039 213 82 73 chr13 76493377 76493811 -43251087 + L1MEc LINE L1 5384 5881 -763 2290 106 0 3 chr13 76493895 76494197 -43250701 - AluSg SINE Alu -9 301 1 1297 152 0 51 chr13 76494198 76494435 -43250463 + MLT1B LTR MaLR 34 258 -132 1995 259 61 11 chr13 76494608 76495136 -43249762 + MLT1F1 LTR MaLR 1 554 -13 29190 119 19 64 chr13 76496454 76502900 -43241998 + L1PA7 LINE L1 13 6153 -1 530 232 145 29 chr13 76504586 76504827 -43240071 - MER5C DNA MER1_type -55 269 1 542 261 65 0 chr13 76504842 76504980 -43239918 - MER5A DNA MER1_type -7 182 36 272 273 0 40 chr13 76505460 76505559 -43239339 + MIR SINE MIR 167 261 -1 2482 42 0 0 chr13 76505627 76505933 -43238965 - L1PA8 LINE L1 -6 6166 5861 291 366 51 37 chr13 76506301 76506574 -43238324 + LTR16B LTR ERVL 5 281 -183 27 49 0 0 chr13 76507486 76507527 -43237371 + AT_rich Low_complexity Low_complexity 1 41 0 1258 258 65 89 chr13 76507832 76508383 -43236515 - MLT1H LTR MaLR 0 549 12 563 170 144 27 chr13 76509393 76509581 -43235317 + L1MC5 LINE L1 7723 7932 -29 266 384 10 0 chr13 76510631 76510730 -43234168 + MIR SINE MIR 36 135 -127 187 54 54 0 chr13 76511456 76511493 -43233405 + CT-rich Low_complexity Low_complexity 2 40 0 244 343 47 29 chr13 76512194 76512468 -43232430 + L2 LINE L2 2136 2414 -900 272 261 151 50 chr13 76512798 76512917 -43231981 - L2 LINE L2 -1 3271 3141 663 239 129 0 chr13 76512999 76513154 -43231744 + MER96 DNA MER1_type? 1 175 0 521 158 11 189 chr13 76513488 76513678 -43231220 + MIR SINE MIR 107 262 0 303 208 208 46 chr13 76513999 76514129 -43230769 + L2 LINE L2 3161 3311 -2 281 326 63 60 chr13 76514145 76514430 -43230468 + L2 LINE L2 2460 2745 -569 981 219 90 57 chr13 76514430 76514670 -43230228 + L1MD2 LINE L1 5882 6113 -1882 378 0 0 0 chr13 76514670 76514712 -43230186 + (CA)n Simple_repeat Simple_repeat 2 43 0 981 219 90 57 chr13 76514712 76514901 -43229997 + L1MD2 LINE L1 6113 7965 -30 1061 261 120 13 chr13 76515165 76515597 -43229301 - MLT1H LTR MaLR -3 546 25 202 295 121 58 chr13 76517582 76517755 -43227143 - MIR SINE MIR -77 185 2 2569 53 0 0 chr13 76517903 76518206 -43226692 - AluY SINE Alu -8 303 1 896 283 61 4 chr13 76519652 76519899 -43224999 + MIR SINE MIR 2 262 0 1343 256 148 12 chr13 76519960 76520292 -43224606 - MLT1G1 LTR MaLR -5 590 305 4184 57 0 18 chr13 76520292 76520898 -43224000 - L1PA5 LINE L1 0 6154 5606 1343 256 148 12 chr13 76520898 76521084 -43223814 - MLT1G1 LTR MaLR -290 305 1 945 288 64 30 chr13 76521317 76521745 -43223153 + L2 LINE L2 2555 2994 -319 2787 129 9 2 chr13 76521745 76522170 -43222728 - MSTA LTR MaLR 0 428 1 945 288 64 30 chr13 76522170 76522254 -43222644 + L2 LINE L2 2994 3074 -239 267 255 112 0 chr13 76522519 76522617 -43222281 + MIR SINE MIR 58 166 -96 233 176 20 0 chr13 76522738 76522789 -43222109 + L1MC5 LINE L1 7848 7899 -62 207 0 0 0 chr13 76523035 76523058 -43221840 + (T)n Simple_repeat Simple_repeat 1 23 0 305 229 9 101 chr13 76524897 76525006 -43219892 - L1MC4 LINE L1 -1329 6713 6615 303 250 23 23 chr13 76525048 76525136 -43219762 - L1MC4 LINE L1 -1340 6702 6615 303 250 23 23 chr13 76525153 76525241 -43219657 - L1MC4 LINE L1 -1340 6702 6615 305 281 0 22 chr13 76525253 76525342 -43219556 - L1MC4 LINE L1 -1341 6701 6615 303 250 23 23 chr13 76525359 76525447 -43219451 - L1MC4 LINE L1 -1340 6702 6615 182 150 25 0 chr13 76525448 76525488 -43219410 + (TA)n Simple_repeat Simple_repeat 2 42 0 307 279 23 0 chr13 76525495 76525581 -43219317 - L1MC4 LINE L1 -1340 6702 6615 331 184 23 0 chr13 76525582 76525669 -43219229 + (TA)n Simple_repeat Simple_repeat 2 90 0 487 216 78 48 chr13 76526136 76526303 -43218595 - MIR SINE MIR -10 252 81 353 248 0 0 chr13 76526412 76526513 -43218385 + L1ME LINE L1 5191 5291 -855 1516 272 56 0 chr13 76526526 76526989 -43217909 + L1ME LINE L1 5263 5751 -419 403 316 29 0 chr13 76527173 76527415 -43217483 + (TA)n Simple_repeat Simple_repeat 1 248 0 2074 120 19 10 chr13 76528160 76528469 -43216429 + AluSx SINE Alu 1 312 0 1082 186 13 75 chr13 76529102 76529408 -43215490 + MER119 DNA MER1_type 296 582 -1 249 384 51 0 chr13 76529818 76529956 -43214942 + MIR3 SINE MIR 58 202 -6 2372 104 0 0 chr13 76531414 76531722 -43213176 - AluSg SINE Alu -2 308 1 217 336 49 28 chr13 76531866 76532009 -43212889 - MER5A DNA MER1_type 0 189 44 665 310 105 64 chr13 76532065 76532958 -43211940 + L2 LINE L2 2377 3313 0 248 296 49 28 chr13 76534639 76534783 -43210115 + L1MC/D LINE L1 5712 5856 -265 196 212 106 82 chr13 76534823 76534908 -43209990 - L2 LINE L2 -28 3244 3158 21 57 0 0 chr13 76534948 76534983 -43209915 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 76535145 76535180 -43209718 + AT_rich Low_complexity Low_complexity 1 35 0 1641 139 118 54 chr13 76535185 76535651 -43209247 + LTR54B LTR ERV1 1 496 -2 2249 99 7 0 chr13 76535741 76536035 -43208863 - AluSp SINE Alu -17 296 1 339 298 180 22 chr13 76537188 76537366 -43207532 + MIR SINE MIR 9 214 -48 380 273 52 47 chr13 76537927 76538099 -43206799 - MIR SINE MIR 0 262 90 580 273 43 52 chr13 76538330 76538572 -43206326 - MIR SINE MIR -17 245 4 1951 87 0 0 chr13 76538609 76538879 -43206019 - AluSc SINE Alu 0 306 37 212 263 40 13 chr13 76538882 76538958 -43205940 + L2 LINE L2 3226 3303 -10 * 481 204 32 96 chr13 76538943 76539100 -43205798 - MIR SINE MIR 0 262 116 186 263 0 0 chr13 76539112 76539169 -43205729 + GA-rich Low_complexity Low_complexity 1 57 0 868 242 131 10 chr13 76540156 76540454 -43204444 - MER46C DNA MER2_type 0 338 5 4464 167 52 38 chr13 76540678 76541620 -43203278 - L1MA7 LINE L1 -1 6290 5320 1763 143 24 0 chr13 76541620 76541914 -43202984 - L1PA16 LINE L1 -1 6165 5865 4464 167 52 38 chr13 76541914 76542481 -43202417 - L1MA7 LINE L1 -971 5320 4762 5696 161 22 47 chr13 76542482 76542832 -43202066 + L1 LINE L1 3576 3933 -2213 283 64 0 21 chr13 76542832 76542879 -43202019 - MADE1 DNA Mariner -34 46 1 5696 161 22 47 chr13 76542879 76543350 -43201548 + L1 LINE L1 3933 4406 -1740 2152 80 0 0 chr13 76543350 76543625 -43201273 + AluY SINE Alu 36 310 -1 5696 161 22 47 chr13 76543625 76543962 -43200936 + L1 LINE L1 4406 4750 -1396 368 310 63 29 chr13 76545000 76545340 -43199558 - MLT1J LTR MaLR -5 506 99 1048 189 4 64 chr13 76545639 76545872 -43199026 + MER20 DNA MER1_type 1 219 0 381 241 18 18 chr13 76546955 76547125 -43197773 + (CATA)n Simple_repeat Simple_repeat 4 173 0 538 320 6 6 chr13 76547133 76547308 -43197590 + (CA)n Simple_repeat Simple_repeat 1 175 0 1515 202 99 55 chr13 76547309 76547785 -43197113 + MLT1D LTR MaLR 1 549 0 303 296 65 29 chr13 76548153 76548355 -43196543 - MIR SINE MIR 0 262 12 26 30 0 0 chr13 76549875 76549908 -43194990 + AT_rich Low_complexity Low_complexity 1 33 0 210 156 0 0 chr13 76550674 76550719 -43194179 + CT-rich Low_complexity Low_complexity 3 47 0 716 231 7 0 chr13 76551099 76551242 -43193656 + MER82 DNA MER2_type 2 145 -508 906 294 41 17 chr13 76551441 76551785 -43193113 + L1M4 LINE L1 1880 2231 -5334 330 87 0 0 chr13 76552185 76552231 -43192667 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 2045 113 51 0 chr13 76552233 76552526 -43192372 - AluSc SINE Alu -1 308 1 1554 177 15 4 chr13 76553027 76553293 -43191605 - AluJo SINE Alu -20 292 24 225 139 0 0 chr13 76553692 76553735 -43191163 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 207 167 21 21 chr13 76554755 76554803 -43190095 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 7075 66 1 0 chr13 76555275 76556851 -43188047 + L1PA8 LINE L1 4579 6162 -10 414 275 22 0 chr13 76557197 76557288 -43187610 + MLT1G LTR MaLR 109 201 -394 498 122 0 129 chr13 76557317 76557456 -43187442 + FLAM_A SINE Alu 22 142 0 297 109 0 0 chr13 76557489 76557535 -43187363 + (TC)n Simple_repeat Simple_repeat 1 46 0 926 259 90 47 chr13 76557569 76557890 -43187008 + MLT1G LTR MaLR 250 584 -6 319 302 83 50 chr13 76558087 76558329 -43186569 + L1M4 LINE L1 2374 2623 -4840 298 231 110 11 chr13 76558760 76558851 -43186047 + L2 LINE L2 3168 3267 -5 1313 90 0 6 chr13 76559041 76559208 -43185690 + AluSc SINE Alu 129 294 -15 268 327 77 62 chr13 76559647 76559855 -43185043 - MIR SINE MIR -51 211 1 2335 113 0 0 chr13 76560032 76560342 -43184556 + AluSg SINE Alu 1 310 0 1298 194 97 35 chr13 76560416 76560756 -43184142 + MLT1A1 LTR MaLR 5 365 0 278 248 73 58 chr13 76560850 76560987 -43183911 - MIR SINE MIR -10 252 114 233 213 0 0 chr13 76562116 76562163 -43182735 - L2 LINE L2 -4 3309 3263 1507 197 30 10 chr13 76562305 76562423 -43182475 + AluJo SINE Alu 1 115 -197 279 0 0 0 chr13 76562423 76562454 -43182444 + (TA)n Simple_repeat Simple_repeat 2 32 0 1507 197 30 10 chr13 76562454 76562635 -43182263 + AluJo SINE Alu 115 306 -6 235 204 0 0 chr13 76563838 76563882 -43181016 - L2 LINE L2 0 3313 3270 1485 201 26 55 chr13 76564157 76564541 -43180357 - MLT1A2 LTR MaLR -1 466 1 1691 176 51 0 chr13 76564645 76564941 -43179957 - AluSx SINE Alu 0 312 2 1115 303 57 5 chr13 76564985 76565371 -43179527 - LTR16A LTR ERVL -9 441 36 2126 129 48 31 chr13 76565418 76565774 -43179124 + THE1B LTR MaLR 1 362 -2 11151 97 19 8 chr13 76565776 76567302 -43177596 + THE1B-int LTR MaLR 1 1543 -37 472 95 14 0 chr13 76567402 76567476 -43177422 + THE1B-int LTR MaLR 1506 1580 0 2165 122 51 20 chr13 76567476 76567829 -43177069 + THE1B LTR MaLR 1 364 0 333 198 0 25 chr13 76567869 76567950 -43176948 + HsTC2 DNA Tc2 6 84 -1814 1124 249 61 32 chr13 76567999 76568376 -43176522 + HsTC2 DNA Tc2 1276 1663 -235 3275 210 128 58 chr13 76568437 76569665 -43175233 - L1MCb LINE L1 -4363 2382 1241 7558 31 0 0 chr13 76569665 76571253 -43173645 - L1PA3 LINE L1 0 6155 4566 3275 210 128 58 chr13 76571253 76572129 -43172769 - L1MCb LINE L1 -5504 1241 427 195 42 0 0 chr13 76572129 76572153 -43172745 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 1977 133 0 18 chr13 76572155 76572441 -43172457 - AluSx SINE Alu -31 281 1 3275 210 128 58 chr13 76572441 76572492 -43172406 - L1MCb LINE L1 -6318 427 1 285 244 102 28 chr13 76572533 76572709 -43172189 + HsTC2 DNA Tc2 1710 1898 0 198 333 0 86 chr13 76572727 76572832 -43172066 - L2 LINE L2 -632 2682 2587 8850 146 21 3 chr13 76573093 76575405 -43169493 + L1PA13 LINE L1 3815 6163 0 341 248 158 31 chr13 76575472 76575643 -43169255 + L1MC4 LINE L1 6542 6832 -1061 243 246 25 41 chr13 76575666 76575788 -43169110 + L1MC4 LINE L1 7033 7152 -890 1557 231 128 21 chr13 76575834 76576302 -43168596 - LTR40a LTR ERVL -1 518 1 431 243 87 81 chr13 76576303 76576628 -43168270 + L1MC5 LINE L1 7251 7495 -523 342 340 60 19 chr13 76576639 76576854 -43168044 + L1MC4 LINE L1 7558 7781 -261 194 382 25 76 chr13 76576923 76577161 -43167737 + L2 LINE L2 2992 3217 -55 204 363 97 23 chr13 76577395 76577745 -43167153 + L2 LINE L2 2139 2514 -800 1567 164 3 42 chr13 76577964 76578250 -43166648 - MER41B LTR ERV1 -360 275 1 1848 177 109 75 chr13 76579022 76579518 -43165380 + MLT2B1 LTR ERVL 6 518 -2 23 0 0 0 chr13 76579558 76579581 -43165317 + AT_rich Low_complexity Low_complexity 1 23 0 1756 125 14 4 chr13 76580718 76580999 -43163899 + L1PA16 LINE L1 2675 2958 -3891 3740 211 10 4 chr13 76581003 76581791 -43163107 + L1PA16 LINE L1 4044 4836 -2013 434 102 0 0 chr13 76581794 76581853 -43163045 + MSTA LTR MaLR 1 59 -369 4652 127 7 28 chr13 76581857 76582711 -43162187 + L1PA16 LINE L1 5868 6706 -163 672 157 0 0 chr13 76582711 76582826 -43162072 - L1PA16 LINE L1 -172 6697 6583 944 111 56 0 chr13 76582832 76582976 -43161922 + L1PA16 LINE L1 6709 6860 -9 278 264 23 11 chr13 76582989 76583076 -43161822 - MER103 DNA DNA -43 123 36 21 57 0 0 chr13 76583529 76583564 -43161334 + AT_rich Low_complexity Low_complexity 1 35 0 1275 220 64 32 chr13 76583871 76584353 -43160545 + MLT1E LTR MaLR 1 593 0 5459 163 18 10 chr13 76584572 76586016 -43158882 + L1PB4 LINE L1 4707 6153 -3 2301 184 16 77 chr13 76586320 76586527 -43158371 + MLT2B1 LTR ERVL 1 219 -301 2574 101 81 8 chr13 76586527 76586924 -43157974 - MSTA LTR MaLR 0 428 3 2301 184 16 77 chr13 76586924 76587221 -43157677 + MLT2B1 LTR ERVL 219 474 -46 269 121 0 52 chr13 76587273 76587331 -43157567 + MLT2C2 LTR ERVL 415 464 0 309 285 116 19 chr13 76589531 76589671 -43155227 + MIR SINE MIR 50 214 -48 719 211 102 0 chr13 76589671 76589837 -43155061 - MER5A DNA MER1_type -2 187 5 309 285 116 19 chr13 76589837 76589892 -43155006 + MIR SINE MIR 214 262 0 265 349 197 0 chr13 76591778 76591910 -43152988 + MER5A DNA MER1_type 26 183 -6 240 247 95 91 chr13 76592898 76593141 -43151757 + L1MEd LINE L1 1353 1596 -4934 357 284 29 10 chr13 76593463 76593701 -43151197 + L1MEd LINE L1 1858 2035 -4505 272 272 29 29 chr13 76593706 76593809 -43151089 + L1MEd LINE L1 2183 2285 -4436 10120 168 22 30 chr13 76593983 76594446 -43150452 + L1MEd LINE L1 2696 3161 -3536 2244 115 0 0 chr13 76594446 76594742 -43150156 + AluSx SINE Alu 1 296 -16 1987 158 3 7 chr13 76594752 76595056 -43149842 + AluSx SINE Alu 1 303 -9 10120 168 22 30 chr13 76595056 76596665 -43148233 + L1MEd LINE L1 3170 4791 -1906 1966 144 23 16 chr13 76596665 76596971 -43147927 + AluSx SINE Alu 1 308 -4 10120 168 22 30 chr13 76596971 76598890 -43146008 + L1MEd LINE L1 4791 6651 -46 2240 291 47 16 chr13 76598916 76600006 -43144892 + L1M4 LINE L1 2138 3260 -2886 359 175 9 44 chr13 76600011 76600053 -43144845 + GA-rich Low_complexity Low_complexity 2 44 -67 2232 117 3 3 chr13 76600053 76600362 -43144536 + AluSp SINE Alu 1 309 -4 359 175 9 44 chr13 76600362 76600433 -43144465 + GA-rich Low_complexity Low_complexity 44 111 0 274 279 87 37 chr13 76600446 76600768 -43144130 + L1M4 LINE L1 3254 3591 -2555 * 1202 258 106 44 chr13 76600753 76601185 -43143713 + L1M4 LINE L1 3832 4329 -1817 1909 93 12 0 chr13 76601185 76601433 -43143465 + AluY SINE Alu 39 289 -22 1202 258 106 44 chr13 76601433 76601730 -43143168 + L1M4 LINE L1 4329 4606 -1540 1392 182 34 83 chr13 76601790 76602174 -43142724 - MLT1A1 LTR MaLR 0 365 1 1006 274 48 43 chr13 76602174 76602590 -43142308 - LTR16A LTR ERVL -8 442 25 336 257 156 0 chr13 76602612 76602721 -43142177 - MIR SINE MIR -51 211 86 4974 46 8 2 chr13 76602955 76603563 -43141335 - L1PA7 LINE L1 -1 6153 5542 225 210 136 0 chr13 76603999 76604080 -43140818 - L1MA10 LINE L1 -2 6332 6241 212 194 0 0 chr13 76604085 76604121 -43140777 + (TA)n Simple_repeat Simple_repeat 2 37 0 261 238 0 24 chr13 76604121 76604205 -43140693 - L1MA10 LINE L1 -81 6253 6172 1010 236 106 18 chr13 76604259 76604589 -43140309 - L1ME1 LINE L1 -306 5860 5502 948 364 60 12 chr13 76606422 76606941 -43137957 - L3 LINE CR1 -476 1101 558 758 256 14 42 chr13 76606954 76607169 -43137729 + MER58A DNA MER1_type 9 217 -7 265 290 167 37 chr13 76607194 76607356 -43137542 - L3 LINE CR1 -1037 540 358 204 158 0 0 chr13 76607770 76607808 -43137090 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 259 314 92 94 chr13 76608567 76608981 -43135917 + L2 LINE L2 2838 3250 -22 198 382 0 0 chr13 76609503 76609571 -43135327 + MIR SINE MIR 32 99 -109 248 285 89 75 chr13 76609605 76609819 -43135079 - MIR SINE MIR -38 224 8 * 434 332 46 14 chr13 76609772 76609989 -43134909 + MIR SINE MIR 37 260 -2 228 222 56 0 chr13 76610168 76610222 -43134676 + MIR3 SINE MIR 100 156 -52 212 261 0 0 chr13 76611797 76611843 -43133055 + MIR SINE MIR 216 261 -1 2116 124 17 0 chr13 76613110 76613430 -43131468 + AluSx SINE Alu 1 325 0 24 32 0 0 chr13 76614419 76614450 -43130448 + AT_rich Low_complexity Low_complexity 1 31 0 279 0 0 0 chr13 76615476 76615507 -43129391 + (CA)n Simple_repeat Simple_repeat 2 32 0 419 269 43 27 chr13 76615654 76615911 -43128987 - HAL1 LINE L1 -290 2217 1957 1819 174 0 10 chr13 76615927 76616221 -43128677 + AluSx SINE Alu 1 291 -21 1576 222 99 6 chr13 76616329 76616681 -43128217 + MSTD LTR MaLR 1 385 -11 3341 234 78 71 chr13 76616685 76616925 -43127973 + L1MB7 LINE L1 321 558 -6086 10881 29 0 0 chr13 76616925 76619003 -43125895 + L1PA3 LINE L1 4075 6149 -6 3341 234 78 71 chr13 76619003 76619485 -43125413 + L1MB7 LINE L1 558 1035 -5609 1576 200 0 10 chr13 76619485 76619780 -43125118 - AluJb SINE Alu -11 301 10 3341 234 78 71 chr13 76619780 76621279 -43123619 + L1MB7 LINE L1 1035 2839 -3805 966 200 12 0 chr13 76621286 76621456 -43123442 + AluJb SINE Alu 107 278 -34 594 159 0 0 chr13 76621495 76621602 -43123296 + GA-rich Low_complexity Low_complexity 3 109 0 6023 274 85 20 chr13 76621604 76624241 -43120657 + L1MB7 LINE L1 2878 5687 -957 665 200 0 0 chr13 76624253 76624368 -43120530 + FLAM_C SINE Alu 7 121 -22 25 0 0 0 chr13 76624368 76624393 -43120505 + AT_rich Low_complexity Low_complexity 1 25 0 781 182 67 0 chr13 76624393 76624558 -43120340 + L1MB7 LINE L1 5689 5864 -780 2884 181 44 5 chr13 76624561 76625176 -43119722 + L1MB7 LINE L1 6025 6663 -19 199 337 119 45 chr13 76625776 76626019 -43118879 + L2 LINE L2 2618 2878 -436 1964 157 102 29 chr13 76626486 76626899 -43117999 + MER65A LTR ERV1 1 443 -2 231 347 84 0 chr13 76627142 76627237 -43117661 + L2 LINE L2 3134 3236 -36 241 242 137 11 chr13 76627660 76627755 -43117143 - MIR SINE MIR -72 190 84 458 308 25 30 chr13 76629771 76629969 -43114929 - MIR SINE MIR -63 199 3 661 314 5 49 chr13 76630264 76630277 -43114621 + MIR SINE MIR 16 28 -234 2032 139 7 0 chr13 76630277 76630571 -43114327 + AluSg SINE Alu 1 296 -14 661 314 5 49 chr13 76630571 76630780 -43114118 + MIR SINE MIR 28 228 -34 1491 192 15 22 chr13 76630867 76631080 -43113818 + AluJo SINE Alu 14 226 -86 2005 134 49 25 chr13 76631080 76631446 -43113452 + THE1C LTR MaLR 1 375 0 1491 192 15 22 chr13 76631446 76631503 -43113395 + AluJo SINE Alu 226 282 -30 23 33 0 0 chr13 76631506 76631536 -43113362 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr13 76631594 76631626 -43113272 + AT_rich Low_complexity Low_complexity 1 32 0 784 154 0 68 chr13 76632822 76632984 -43111914 + FRAM SINE Alu 18 168 -8 217 259 17 0 chr13 76633054 76633112 -43111786 + CT-rich Low_complexity Low_complexity 2 60 0 1501 240 91 40 chr13 76633622 76633650 -43111248 + L1MC4 LINE L1 6475 6500 -1542 180 0 0 0 chr13 76633650 76633670 -43111228 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1501 240 91 40 chr13 76633670 76634070 -43110828 + L1MC4 LINE L1 6500 6878 -1164 2254 143 22 0 chr13 76634070 76634426 -43110472 - THE1B LTR MaLR 0 364 1 1501 240 91 40 chr13 76634426 76635150 -43109748 + L1MC4 LINE L1 6878 7845 -197 21 36 0 0 chr13 76635431 76635459 -43109439 + AT_rich Low_complexity Low_complexity 1 28 0 332 343 84 12 chr13 76635640 76635806 -43109092 + MIR SINE MIR 20 197 -65 640 288 92 25 chr13 76636565 76636805 -43108093 + MIR SINE MIR 7 262 0 21 89 0 0 chr13 76637045 76637101 -43107797 + AT_rich Low_complexity Low_complexity 1 56 0 1513 157 14 32 chr13 76637598 76637973 -43106925 + Tigger2a DNA MER2_type 1 444 0 2250 177 29 10 chr13 76638113 76638531 -43106367 - MSTB LTR MaLR 0 426 1 197 81 0 27 chr13 76638853 76638890 -43106008 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 436 254 0 65 chr13 76638909 76639047 -43105851 - MIR SINE MIR -13 249 121 205 306 14 0 chr13 76639336 76639408 -43105490 + CT-rich Low_complexity Low_complexity 1 73 0 192 324 37 28 chr13 76640210 76640318 -43104580 + L2 LINE L2 3162 3270 -2 453 252 0 0 chr13 76641480 76641583 -43103315 - MER5B DNA MER1_type 0 178 76 1822 137 30 27 chr13 76641866 76642166 -43102732 - AluSx SINE Alu -11 301 1 1108 294 129 32 chr13 76642589 76643788 -43101110 + L1M4 LINE L1 3780 5094 -1052 1917 262 114 23 chr13 76643817 76644904 -43099994 + L1ME LINE L1 3895 5161 -985 479 332 36 15 chr13 76644905 76645179 -43099719 + L1ME LINE L1 5112 5391 -755 5809 95 33 7 chr13 76645179 76646470 -43098428 + L1PA13 LINE L1 4846 6151 -12 252 295 83 18 chr13 76646659 76646861 -43098037 + L1MA6 LINE L1 5734 5947 -219 917 47 0 0 chr13 76646968 76647075 -43097823 + U6 snRNA snRNA 1 107 0 4265 192 12 6 chr13 76647077 76647980 -43096918 + L1PA8A LINE L1 1189 2097 -4049 18493 118 25 9 chr13 76647980 76651698 -43093200 + L1PA8A LINE L1 2429 6131 0 239 284 108 77 chr13 76651962 76652156 -43092742 + MIR SINE MIR 20 219 -43 353 317 97 27 chr13 76652331 76652517 -43092381 - MIR SINE MIR -15 247 49 820 119 11 28 chr13 76652970 76653146 -43091752 + (GGAA)n Simple_repeat Simple_repeat 4 176 0 2097 127 0 22 chr13 76653409 76653723 -43091175 + AluSx SINE Alu 3 309 -3 528 289 80 35 chr13 76653724 76653925 -43090973 + MIR SINE MIR 21 230 -32 25 75 0 0 chr13 76654227 76654280 -43090618 + AT_rich Low_complexity Low_complexity 1 53 0 277 361 36 0 chr13 76655242 76655325 -43089573 - L3 LINE CR1 -122 1455 1370 25 83 0 0 chr13 76655519 76655579 -43089319 + AT_rich Low_complexity Low_complexity 1 60 0 359 316 0 0 chr13 76655710 76655827 -43089071 + L1ME LINE L1 5547 5663 -458 23 42 0 21 chr13 76655852 76655878 -43089020 + AT_rich Low_complexity Low_complexity 1 27 -20 2221 105 3 0 chr13 76655878 76656173 -43088725 + AluSx SINE Alu 1 296 -16 23 42 0 21 chr13 76656173 76656194 -43088704 + AT_rich Low_complexity Low_complexity 27 47 0 1511 149 152 7 chr13 76657067 76657363 -43087535 + MER44D DNA MER2_type 1 609 0 329 293 21 14 chr13 76657898 76658038 -43086860 + GA-rich Low_complexity Low_complexity 3 143 0 830 212 117 0 chr13 76658196 76658375 -43086523 - MER58A DNA MER1_type -11 213 14 22 35 0 0 chr13 76659213 76659242 -43085656 + AT_rich Low_complexity Low_complexity 1 29 0 1290 191 89 13 chr13 76659250 76659486 -43085412 + AluJb SINE Alu 4 257 -55 240 259 103 9 chr13 76659526 76659642 -43085256 + L1ME3A LINE L1 21 147 -5972 882 288 38 17 chr13 76659736 76660028 -43084870 + LTR16B LTR ERVL 167 464 0 1459 6 0 39 chr13 76660055 76660234 -43084664 + L1HS LINE L1 5984 6155 0 3377 303 50 29 chr13 76660277 76661699 -43083199 + HERV16 LTR ERVL 38 1489 -3507 355 297 48 6 chr13 76661715 76661884 -43083014 + HERV16 LTR ERVL 2288 2433 -2590 779 297 9 22 chr13 76661941 76662170 -43082728 + HERV16 LTR ERVL 2693 2920 -2103 1457 271 114 54 chr13 76662275 76663358 -43081540 + L1ME3A LINE L1 3797 4944 -1185 1607 242 97 75 chr13 76663374 76664451 -43080447 + L1ME3A LINE L1 5019 6132 -21 21 36 0 0 chr13 76664465 76664493 -43080405 + AT_rich Low_complexity Low_complexity 1 28 0 676 183 0 0 chr13 76664663 76664807 -43080091 - AluSg/x SINE Alu 0 313 170 25 0 0 0 chr13 76665276 76665301 -43079597 + AT_rich Low_complexity Low_complexity 1 25 0 805 266 101 0 chr13 76666446 76666664 -43078234 - MIR SINE MIR 0 262 23 374 270 126 58 chr13 76669400 76669574 -43075324 - L2 LINE L2 -33 3280 3095 226 213 0 0 chr13 76670144 76670191 -43074707 + (TG)n Simple_repeat Simple_repeat 2 48 0 180 146 0 73 chr13 76670561 76670602 -43074296 - L2 LINE L2 -78 3235 3198 307 318 13 13 chr13 76670661 76670812 -43074086 - LTR33 LTR ERVL 0 521 371 1836 210 26 52 chr13 76670823 76671331 -43073567 - MLT1D LTR MaLR -12 472 1 808 279 128 16 chr13 76671331 76671632 -43073266 - LTR33 LTR ERVL -184 337 3 863 211 66 33 chr13 76671927 76672140 -43072758 - MER46A DNA MER2_type -16 220 1 21 0 0 0 chr13 76672550 76672571 -43072327 + AT_rich Low_complexity Low_complexity 1 21 0 3858 138 3 34 chr13 76672854 76673476 -43071422 - LTR26 LTR ERV1 0 603 1 28 71 0 0 chr13 76675204 76675260 -43069638 + AT_rich Low_complexity Low_complexity 1 56 0 1276 235 35 159 chr13 76676156 76676944 -43067954 - LTR8 LTR ERV1 0 691 1 347 301 51 31 chr13 76677502 76677698 -43067200 + L1M4 LINE L1 3090 3289 -2857 1164 294 80 11 chr13 76678203 76678726 -43066172 - L1ME4a LINE L1 -81 6040 5482 646 320 138 21 chr13 76678802 76679380 -43065518 - L2 LINE L2 -1 3312 2670 667 285 96 11 chr13 76679423 76679683 -43065215 - L2 LINE L2 -896 2418 2137 1763 134 0 90 chr13 76681832 76682153 -43062745 + AluJb SINE Alu 1 292 -20 427 236 11 0 chr13 76682322 76682411 -43062487 - MER81 DNA DNA -3 111 22 332 360 55 18 chr13 76684497 76684661 -43060237 + L2 LINE L2 3103 3272 0 22 35 0 0 chr13 76684977 76685006 -43059892 + AT_rich Low_complexity Low_complexity 1 29 0 238 289 190 35 chr13 76686281 76686423 -43058475 + L2 LINE L2 1 164 -3150 1336 255 107 31 chr13 76686423 76687004 -43057894 + L2 LINE L2 1286 1910 -1404 204 333 0 43 chr13 76688480 76688573 -43056325 - MIR3 SINE MIR -10 198 110 266 344 0 0 chr13 76688624 76688717 -43056181 - LTR16A1 LTR ERVL -2 455 363 2648 102 3 3 chr13 76689182 76689546 -43055352 + THE1B LTR MaLR 1 364 0 1910 162 36 39 chr13 76689906 76690213 -43054685 - L1MC2 LINE L1 -10 6334 6027 1739 88 0 0 chr13 76690213 76690429 -43054469 + AluSg/x SINE Alu 87 302 -8 1910 162 36 39 chr13 76690429 76690534 -43054364 - L1MC2 LINE L1 -317 6027 5923 2488 154 29 0 chr13 76693069 76693485 -43051413 - MSTA LTR MaLR 0 428 1 1980 251 70 26 chr13 76693732 76694293 -43050605 + MLT1E LTR MaLR 9 593 0 628 279 134 21 chr13 76694875 76695158 -43049740 - MLT1L LTR MaLR -148 467 153 5989 121 1 4 chr13 76695546 76696867 -43048031 + L1PA15 LINE L1 4844 6159 -6 328 322 128 7 chr13 76697104 76697253 -43047645 + MIR SINE MIR 3 169 -93 4324 78 0 0 chr13 76697424 76697978 -43046920 - MER41A LTR ERV1 0 554 1 1556 175 45 45 chr13 76699312 76699649 -43045249 + MER1B DNA MER1_type 1 337 0 1930 151 20 9 chr13 76699649 76699985 -43044913 + L1MA2 LINE L1 5962 6304 0 279 256 274 48 chr13 76702293 76702687 -43042211 - L2 LINE L2 -5 3308 2826 1529 181 75 43 chr13 76702790 76703166 -43041732 + MLT1B LTR MaLR 3 390 0 231 316 0 13 chr13 76703244 76703323 -43041575 - MIR3 SINE MIR -6 202 125 2237 95 0 0 chr13 76703955 76704238 -43040660 - AluSc SINE Alu -26 283 1 25 0 0 0 chr13 76704241 76704266 -43040632 + AT_rich Low_complexity Low_complexity 1 25 0 185 367 0 76 chr13 76704381 76704460 -43040438 + MIR SINE MIR 1 73 -189 196 356 42 58 chr13 76704703 76704894 -43040004 + MIR SINE MIR 1 188 -74 1911 120 0 26 chr13 76704900 76705166 -43039732 + AluSx SINE Alu 1 259 -53 406 232 77 77 chr13 76705320 76705501 -43039397 - LTR50 LTR ERVL -592 203 23 2144 102 3 3 chr13 76705779 76706108 -43038790 - AluSx SINE Alu 0 329 1 28 61 0 0 chr13 76706742 76706791 -43038107 + AT_rich Low_complexity Low_complexity 1 49 0 1082 167 87 15 chr13 76707120 76707519 -43037379 - MER31B LTR ERV1 0 466 3 386 279 30 30 chr13 76708231 76708396 -43036502 - MER103 DNA DNA -1 165 1 285 293 43 43 chr13 76709354 76709470 -43035428 + L2 LINE L2 3197 3312 -1 189 147 0 0 chr13 76710014 76710048 -43034850 + (CA)n Simple_repeat Simple_repeat 2 35 0 5444 63 4 0 chr13 76712370 76713057 -43031841 - L1PA7 LINE L1 -6 6148 5459 228 302 31 31 chr13 76713061 76713157 -43031741 - MIR3 SINE MIR -102 106 11 1123 184 13 34 chr13 76713350 76713589 -43031309 + MLT1D LTR MaLR 1 234 -271 * 1291 190 12 88 chr13 76713579 76713921 -43030977 + MLT1D LTR MaLR 190 505 0 189 138 138 46 chr13 76714023 76714088 -43030810 - L2 LINE L2 -1595 1719 1649 * 216 232 30 111 chr13 76714050 76714149 -43030749 - MIR SINE MIR 0 262 172 453 244 0 113 chr13 76714149 76714231 -43030667 + MIR SINE MIR 94 151 -111 2210 214 53 28 chr13 76714231 76714759 -43030139 + MLT1F LTR MaLR 1 541 -1 453 244 0 113 chr13 76714759 76714836 -43030062 + MIR SINE MIR 151 235 -27 186 103 0 0 chr13 76716485 76716514 -43028384 + (TG)n Simple_repeat Simple_repeat 1 29 0 228 135 0 0 chr13 76716743 76716780 -43028118 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 259 253 20 50 chr13 76716931 76717030 -43027868 - L2 LINE L2 -1003 2311 2216 251 279 77 15 chr13 76717128 76717250 -43027648 - MIR SINE MIR -69 139 6 234 0 0 0 chr13 76717624 76717650 -43027248 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2240 88 0 7 chr13 76717650 76717933 -43026965 - AluSq SINE Alu -32 281 1 449 285 7 130 chr13 76718461 76718731 -43026167 - MIR SINE MIR -14 248 12 191 362 16 8 chr13 76718722 76718849 -43026049 - MIR SINE MIR -2 260 133 * 288 221 66 8 chr13 76719162 76719284 -43025614 - L1ME4a LINE L1 -33 6088 5960 1400 347 96 9 chr13 76719475 76720285 -43024613 + L2 LINE L2 2035 2915 -399 798 187 27 0 chr13 76720339 76720489 -43024409 + L1MD2 LINE L1 142 295 -6248 342 96 0 0 chr13 76720490 76720542 -43024356 + LTR26 LTR ERV1 1 52 -551 4315 69 35 16 chr13 76720542 76721644 -43023254 + MER11A LTR ERVK 1 1266 0 3108 151 37 0 chr13 76721644 76722181 -43022717 + LTR26 LTR ERV1 47 603 0 1336 270 65 27 chr13 76722181 76722825 -43022073 + L1MD2 LINE L1 293 1072 -5471 950 204 60 63 chr13 76722825 76723110 -43021788 - MLT1D LTR MaLR -194 311 28 577 226 31 10 chr13 76723136 76723331 -43021567 + L1MD2 LINE L1 2300 2498 -4042 * 893 233 4 4 chr13 76723322 76723567 -43021331 + L1MD2 LINE L1 2879 3123 -3417 455 91 78 0 chr13 76723567 76723644 -43021254 + LTR26B LTR ERV1 1 83 -448 4087 150 15 17 chr13 76723644 76724356 -43020542 - MER50 LTR ERV1 -23 711 1 2629 125 53 5 chr13 76724356 76724788 -43020110 + LTR26B LTR ERV1 79 531 0 310 229 125 14 chr13 76724788 76724932 -43019966 + L1MD2 LINE L1 3120 3279 -3261 363 222 58 0 chr13 76724952 76725123 -43019775 + L1MD2 LINE L1 3478 3658 -2882 363 319 48 11 chr13 76725163 76725351 -43019547 + L1MD2 LINE L1 3647 3841 -2699 1258 248 33 47 chr13 76725353 76725865 -43019033 + L1MD2 LINE L1 4053 4557 -1983 256 253 0 61 chr13 76725869 76725968 -43018930 + L1MD2 LINE L1 5033 5125 -1415 344 200 25 38 chr13 76725968 76726048 -43018850 + MLT1D LTR MaLR 1 79 -426 1880 161 60 34 chr13 76726057 76726589 -43018309 - MLT2A2 LTR ERVL -5 549 1 955 249 128 18 chr13 76726605 76727003 -43017895 + MLT1D LTR MaLR 64 505 0 1884 202 79 25 chr13 76727005 76728009 -43016889 + L1MD2 LINE L1 5124 6173 -580 2442 86 0 0 chr13 76728010 76728314 -43016584 + AluSp SINE Alu 1 304 -9 1955 168 36 39 chr13 76728356 76728907 -43015991 + MLT2A2 LTR ERVL 1 554 0 1108 174 4 50 chr13 76728907 76729165 -43015733 + L1MD2 LINE L1 6187 6432 -321 489 169 0 0 chr13 76729640 76729729 -43015169 - AluJ/FRAM SINE Alu -5 307 219 1961 176 3 0 chr13 76730187 76730488 -43014410 - AluSx SINE Alu -10 302 1 243 269 152 69 chr13 76730556 76731003 -43013895 - L1ME LINE L1 -320 5801 5318 183 344 83 38 chr13 76731191 76731348 -43013550 - MIR3 SINE MIR -12 196 33 1868 185 3 0 chr13 76731567 76731875 -43013023 - AluJo SINE Alu -3 309 1 419 287 120 23 chr13 76734344 76734602 -43010296 + Charlie2 DNA MER1_type 13 295 -2487 932 265 78 27 chr13 76734667 76735079 -43009819 + Charlie2b DNA MER1_type 835 1267 -1515 199 111 22 22 chr13 76735107 76735152 -43009746 + GA-rich Low_complexity Low_complexity 2 46 0 27 29 0 0 chr13 76736060 76736094 -43008804 + AT_rich Low_complexity Low_complexity 1 34 0 573 318 109 16 chr13 76736303 76736614 -43008284 - L2 LINE L2 -1216 2098 1759 610 326 72 47 chr13 76736789 76736825 -43008073 - L2 LINE L2 -1568 1746 1712 1864 156 0 22 chr13 76736825 76737139 -43007759 - AluJo SINE Alu -5 307 1 610 326 72 47 chr13 76737139 76737657 -43007241 - L2 LINE L2 -1602 1712 1178 475 297 42 12 chr13 76737835 76738000 -43006898 - MIR SINE MIR -65 197 28 706 265 65 62 chr13 76738886 76739177 -43005721 + MLT1J LTR MaLR 71 362 -149 187 296 19 0 chr13 76739681 76739735 -43005163 + L2 LINE L2 3217 3271 -1 426 294 120 52 chr13 76739813 76740214 -43004684 + MLT1J LTR MaLR 36 463 -48 1870 172 7 13 chr13 76740479 76740782 -43004116 - AluJo SINE Alu -6 306 6 2142 147 108 3 chr13 76741296 76741683 -43003215 - MSTA LTR MaLR 0 428 1 9368 162 30 4 chr13 76741686 76743293 -43001605 - MSTA-int LTR MaLR -3 1648 1 2568 141 29 5 chr13 76743293 76743711 -43001187 - MSTA LTR MaLR 0 428 1 300 256 29 143 chr13 76743722 76743960 -43000938 + HAL1 LINE L1 973 1183 -1324 23 33 0 0 chr13 76744174 76744204 -43000694 + AT_rich Low_complexity Low_complexity 1 30 0 305 304 34 15 chr13 76744209 76744413 -43000485 + L1M4 LINE L1 2147 2354 -3792 235 229 0 0 chr13 76745411 76745459 -42999439 + L2 LINE L2 2238 2285 -1029 1550 191 4 7 chr13 76745461 76745798 -42999100 + AluJo SINE Alu 40 375 0 267 302 93 17 chr13 76745802 76745974 -42998924 + L2 LINE L2 2303 2487 -827 252 83 0 0 chr13 76745976 76746012 -42998886 + MSTC LTR MaLR 1 36 -392 * 701 125 25 0 chr13 76746010 76746130 -42998768 + MSTC LTR MaLR 306 428 0 473 289 55 35 chr13 76746154 76746355 -42998543 + L2 LINE L2 2536 2740 -574 333 68 0 0 chr13 76746358 76746402 -42998496 + Tigger1 DNA MER2_type 1812 1855 -563 * 10928 130 21 3 chr13 76746400 76748191 -42996707 - Tigger1 DNA MER2_type -594 1824 1 343 352 28 7 chr13 76748268 76748410 -42996488 + L2 LINE L2 3161 3305 -8 1215 249 25 128 chr13 76748539 76749049 -42995849 + L1ME1 LINE L1 5702 6162 -3 6138 94 8 1 chr13 76749204 76750037 -42994861 + L1PA10 LINE L1 5316 6158 -10 21 0 0 0 chr13 76750639 76750660 -42994238 + AT_rich Low_complexity Low_complexity 1 21 0 341 253 47 77 chr13 76750960 76751130 -42993768 + MER103 DNA DNA 2 166 0 450 306 135 0 chr13 76751775 76751945 -42992953 + MER91A DNA MER1_type 1 193 -3 22 0 0 0 chr13 76752529 76752551 -42992347 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 76753785 76753807 -42991091 + AT_rich Low_complexity Low_complexity 1 22 0 286 293 30 24 chr13 76754031 76754198 -42990700 - L1MC4a LINE L1 -1838 5970 5803 306 0 0 0 chr13 76755687 76755721 -42989177 + (CA)n Simple_repeat Simple_repeat 1 34 0 1836 138 0 4 chr13 76755967 76756235 -42988663 + AluSx SINE Alu 33 299 -13 193 277 15 31 chr13 76756570 76756635 -42988263 + L2 LINE L2 3201 3264 -8 182 83 56 0 chr13 76756762 76756798 -42988100 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 282 56 0 0 chr13 76756852 76756888 -42988010 + (TA)n Simple_repeat Simple_repeat 2 37 0 2988 123 21 5 chr13 76759173 76759594 -42985304 - MSTA LTR MaLR 0 428 1 476 279 258 0 chr13 76760578 76760768 -42984130 - MIR SINE MIR -5 257 19 194 294 59 0 chr13 76760815 76760866 -42984032 - L3 LINE CR1 -1180 397 344 794 159 85 17 chr13 76762109 76762285 -42982613 + MER53 DNA DNA 1 188 -1 1555 120 4 37 chr13 76762463 76762704 -42982194 - AluSg/x SINE Alu -15 297 65 1936 176 45 21 chr13 76762745 76763126 -42981772 + MLT1B LTR MaLR 1 390 0 946 200 44 19 chr13 76763345 76763550 -42981348 - MER63A DNA MER1_type 0 210 1 700 199 63 73 chr13 76763617 76763648 -42981250 + MER5A DNA MER1_type 1 31 -158 2158 131 20 23 chr13 76763648 76763992 -42980906 + MER61A LTR ERV1 1 343 0 700 199 63 73 chr13 76763992 76764151 -42980747 + MER5A DNA MER1_type 31 189 0 479 276 164 7 chr13 76764163 76764315 -42980583 - MER5A DNA MER1_type -5 184 9 678 245 58 48 chr13 76764434 76764642 -42980256 + MER63A DNA MER1_type 1 210 0 182 306 0 0 chr13 76764905 76764954 -42979944 - L2 LINE L2 -1 3312 3264 2029 121 0 0 chr13 76764973 76765245 -42979653 - AluSx SINE Alu -40 272 1 358 270 54 9 chr13 76765365 76765476 -42979422 + L2 LINE L2 3189 3304 -9 378 0 0 0 chr13 76766055 76766097 -42978801 + (CA)n Simple_repeat Simple_repeat 2 43 0 908 227 81 96 chr13 76766269 76766704 -42978194 + MLT1B LTR MaLR 1 390 0 1991 94 0 4 chr13 76767122 76767377 -42977521 - AluSq SINE Alu -44 269 16 29 47 0 0 chr13 76768587 76768630 -42976268 + AT_rich Low_complexity Low_complexity 1 43 0 2144 162 43 0 chr13 76769056 76769402 -42975496 + MLT1A1 LTR MaLR 1 361 -4 223 329 109 14 chr13 76769563 76769773 -42975125 + L2 LINE L2 2822 3051 -221 2238 107 0 3 chr13 76769904 76770202 -42974696 + AluSg SINE Alu 1 297 -13 1125 183 97 93 chr13 76770205 76770712 -42974186 + L1MC5 LINE L1 7199 7707 -254 716 208 128 37 chr13 76770893 76771215 -42973683 - LTR37B LTR ERV1 0 464 111 976 164 11 6 chr13 76771318 76771495 -42973403 - MER20 DNA MER1_type 0 219 42 2397 75 3 3 chr13 76771630 76771938 -42972960 - AluY SINE Alu -1 310 3 180 0 0 0 chr13 76772306 76772326 -42972572 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4471 64 2 0 chr13 76772331 76772861 -42972037 - L1PA7 LINE L1 -15 6139 5609 1894 90 27 8 chr13 76773868 76774124 -42970774 - L1PA10 LINE L1 -4 6164 5904 1285 310 168 17 chr13 76774124 76775048 -42969850 - L2 LINE L2 -41 3272 2199 445 181 12 0 chr13 76775078 76775161 -42969737 + Charlie5 DNA MER1_type 1205 1288 -1324 806 210 97 29 chr13 76777972 76778495 -42966403 - L1MDa LINE L1 -3634 2906 2348 279 0 0 0 chr13 76778519 76778550 -42966348 + (TTA)n Simple_repeat Simple_repeat 3 33 0 45108 39 1 3 chr13 76778550 76784695 -42960203 - L1PA4 LINE L1 -18 6137 2 2044 198 14 7 chr13 76784698 76785106 -42959792 + Charlie5 DNA MER1_type 1267 1677 -935 1486 196 74 20 chr13 76785106 76785184 -42959714 + MER93b LTR ERV1 3 75 -298 2203 89 3 3 chr13 76785184 76785477 -42959421 + AluY SINE Alu 1 293 -18 1486 196 74 20 chr13 76785477 76785750 -42959148 + MER93b LTR ERV1 75 373 0 * 4420 158 54 19 chr13 76785750 76786553 -42958345 + Charlie5 DNA MER1_type 1671 2443 -181 204 40 0 0 chr13 76786553 76786578 -42958320 + (TA)n Simple_repeat Simple_repeat 2 26 0 2041 114 4 7 chr13 76786579 76786859 -42958039 - AluSx SINE Alu -33 279 1 4420 158 54 19 chr13 76786859 76786939 -42957959 + Charlie5 DNA MER1_type 2442 2588 -36 268 229 0 16 chr13 76788339 76788400 -42956498 + MIR3 SINE MIR 149 208 0 1465 157 16 16 chr13 76788931 76789179 -42955719 - AluJo SINE Alu 0 312 65 196 188 0 42 chr13 76790869 76790917 -42953981 + L2 LINE L2 3252 3297 -16 323 319 206 0 chr13 76791290 76791431 -42953467 - L2 LINE L2 -1 3271 3102 861 176 0 22 chr13 76792081 76792217 -42952681 - FLAM_A SINE Alu 0 133 1 452 264 19 104 chr13 76793069 76793281 -42951617 - MIR SINE MIR -50 212 19 464 224 145 9 chr13 76793391 76793543 -42951355 + MER5B DNA MER1_type 1 163 -15 286 259 110 53 chr13 76793552 76793711 -42951187 - MER5B DNA MER1_type -6 183 6 1008 225 32 47 chr13 76793719 76793900 -42950998 + MIR SINE MIR 12 189 -73 869 200 43 27 chr13 76793900 76794085 -42950813 + MER5A DNA MER1_type 1 188 -1 1008 225 32 47 chr13 76794085 76794156 -42950742 + MIR SINE MIR 189 260 -2 335 323 43 80 chr13 76794628 76795043 -42949855 - L2 LINE L2 -15 3298 2899 641 336 46 24 chr13 76795261 76795633 -42949265 + L3b LINE CR1 1117 1496 -87 1391 214 164 93 chr13 76796410 76797107 -42947791 + LTR41 LTR ERVL 29 523 0 632 256 73 24 chr13 76797127 76797291 -42947607 - MER69A DNA AcHobo -1 176 5 2277 82 0 20 chr13 76798146 76798438 -42946460 + AluSx SINE Alu 3 288 -24 1045 126 7 0 chr13 76798449 76798640 -42946258 + AluSg/x SINE Alu 131 322 0 1100 197 161 45 chr13 76798717 76799052 -42945846 + MLT1A2 LTR MaLR 1 374 0 187 43 0 0 chr13 76799229 76799252 -42945646 + (TTTTA)n Simple_repeat Simple_repeat 2 105 0 1994 134 7 0 chr13 76799252 76799535 -42945363 - AluSq SINE Alu -28 285 1 397 294 160 37 chr13 76800416 76800603 -42944295 + MIR SINE MIR 1 210 -52 186 43 0 0 chr13 76800635 76800658 -42944240 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2215 97 0 3 chr13 76800668 76800956 -42943942 - AluSg SINE Alu -23 287 1 1351 181 156 3 chr13 76801923 76802238 -42942660 - MLT1A1 LTR MaLR -2 363 1 2161 120 0 7 chr13 76803416 76803716 -42941182 - AluSx SINE Alu -14 298 1 26 0 0 0 chr13 76803716 76803742 -42941156 + AT_rich Low_complexity Low_complexity 1 26 0 376 250 11 22 chr13 76803853 76803945 -42940953 + L2 LINE L2 3222 3312 -1 1755 173 10 3 chr13 76804456 76804756 -42940142 - AluJb SINE Alu -10 302 1 298 229 57 87 chr13 76805029 76805089 -42939809 - MIR SINE MIR -25 183 123 2248 109 0 20 chr13 76805089 76805392 -42939506 + AluSx SINE Alu 1 297 -15 298 229 57 87 chr13 76805392 76805499 -42939399 - MIR SINE MIR -85 123 12 2552 177 15 26 chr13 76805646 76806257 -42938641 + pTR5 LTR ERV1 743 1346 -1092 4001 132 34 101 chr13 76806271 76807152 -42937746 + LTR12 LTR ERV1 5 826 0 1966 142 6 28 chr13 76807509 76807826 -42937072 - AluSq SINE Alu -3 310 1 1828 89 20 4 chr13 76807841 76808089 -42936809 - AluSx SINE Alu -38 274 23 2123 117 0 0 chr13 76808110 76808448 -42936450 - AluSg SINE Alu 0 338 1 2795 144 14 8 chr13 76809482 76809981 -42934917 + L1MB3 LINE L1 5682 6183 0 425 228 11 0 chr13 76810857 76810949 -42933949 + Tigger7 DNA MER2_type 2 94 -2393 * 1960 212 12 14 chr13 76810948 76811133 -42933765 + Tigger7 DNA MER2_type 43 227 -2260 2625 81 0 78 chr13 76811133 76811541 -42933357 - MER51B LTR ERV1 -1 376 1 1960 212 12 14 chr13 76811541 76811775 -42933123 + Tigger7 DNA MER2_type 227 461 -2026 907 194 117 14 chr13 76811771 76812164 -42932734 - MER110A LTR ERV1 -4 464 1 * 326 257 81 0 chr13 76812210 76812284 -42932614 - MER91C DNA MER1_type -30 110 31 3517 50 2 0 chr13 76812690 76813127 -42931771 - L1PA5 LINE L1 0 6154 5717 7015 46 8 0 chr13 76813227 76814501 -42930397 - L1PA5 LINE L1 -412 5742 4461 10916 42 0 5 chr13 76814501 76815939 -42928959 + L1PA5 LINE L1 3026 4456 -1690 321 382 25 10 chr13 76816208 76816407 -42928491 - L2 LINE L2 -426 2888 2687 3786 177 55 11 chr13 76817315 76817343 -42927555 - MER6 DNA MER2_type 0 865 840 3449 78 16 0 chr13 76817343 76817794 -42927104 + LTR22A LTR ERVK 1 458 0 3786 177 55 11 chr13 76817794 76818561 -42926337 - MER6 DNA MER2_type -25 840 35 2488 91 19 3 chr13 76818800 76819163 -42925735 - L1PB1 LINE L1 -1 6150 5782 207 215 38 25 chr13 76819163 76819242 -42925656 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 * 252 185 31 15 chr13 76819191 76819256 -42925642 + (TA)n Simple_repeat Simple_repeat 1 66 0 292 152 30 0 chr13 76819280 76819346 -42925552 + (CA)n Simple_repeat Simple_repeat 2 69 0 1253 58 41 0 chr13 76819346 76819518 -42925380 + L1P5 LINE L1 5607 5785 -366 260 271 84 0 chr13 76819486 76819593 -42925305 - L1MC4 LINE L1 -1313 6729 6614 * 2719 159 41 2 chr13 76819564 76820586 -42924312 - L1P4 LINE L1 -456 5718 4664 253 214 202 22 chr13 76820586 76820675 -42924223 + L2 LINE L2 3168 3272 0 1056 123 0 147 chr13 76821390 76821642 -42923256 - AluSg/x SINE Alu 0 312 98 2466 126 117 13 chr13 76821656 76822108 -42922790 - MER1A DNA MER1_type 0 529 31 21 0 0 0 chr13 76824060 76824081 -42920817 + AT_rich Low_complexity Low_complexity 1 21 0 325 245 91 19 chr13 76827539 76827804 -42917094 + L1ME4a LINE L1 5789 6072 -49 327 345 9 0 chr13 76827851 76827967 -42916931 - L3 LINE CR1 -158 1419 1303 519 224 104 52 chr13 76828239 76828431 -42916467 - MIR SINE MIR -50 212 11 405 323 91 0 chr13 76828607 76828805 -42916093 + LTR33 LTR ERVL 1 216 -305 355 259 107 42 chr13 76828846 76829062 -42915836 + LTR33 LTR ERVL 292 521 0 2050 155 3 0 chr13 76830379 76830688 -42914210 + AluSx SINE Alu 1 310 -2 316 294 44 28 chr13 76831241 76831421 -42913477 + MER112 DNA MER1_type 17 199 -61 208 306 0 0 chr13 76831724 76831773 -42913125 + L2 LINE L2 3203 3251 -21 21 36 0 0 chr13 76832585 76832613 -42912285 + AT_rich Low_complexity Low_complexity 1 28 0 229 114 0 0 chr13 76834341 76834376 -42910522 - MIR SINE MIR -56 152 118 209 194 0 0 chr13 76834379 76834419 -42910479 - MIR SINE MIR -112 150 112 2223 104 0 22 chr13 76834978 76835295 -42909603 + AluSx SINE Alu 1 310 -2 2080 101 0 7 chr13 76835978 76836256 -42908642 + AluSx SINE Alu 4 279 -33 285 29 0 0 chr13 76836256 76836290 -42908608 + (CA)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr13 76837330 76837355 -42907543 + (A)n Simple_repeat Simple_repeat 1 25 0 267 350 80 0 chr13 76838314 76838451 -42906447 - MIR3 SINE MIR -11 197 50 26 64 0 0 chr13 76838722 76838769 -42906129 + AT_rich Low_complexity Low_complexity 1 47 0 2456 57 0 13 chr13 76838866 76839165 -42905733 + AluY SINE Alu 1 295 -16 21 0 0 0 chr13 76839489 76839510 -42905388 + AT_rich Low_complexity Low_complexity 1 21 0 601 218 173 20 chr13 76840169 76840371 -42904527 - MIR SINE MIR -2 260 28 2089 133 3 0 chr13 76840542 76840836 -42904062 + AluSx SINE Alu 1 295 -17 258 375 81 49 chr13 76841332 76841676 -42903222 + L2 LINE L2 2918 3272 0 204 170 0 43 chr13 76841791 76841838 -42903060 - L2 LINE L2 -1 3312 3268 231 36 0 0 chr13 76841908 76841936 -42902962 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 191 283 0 19 chr13 76841946 76841999 -42902899 - L2 LINE L2 -39 3233 3182 242 267 0 57 chr13 76842223 76842328 -42902570 + GA-rich Low_complexity Low_complexity 6 104 0 1994 155 36 28 chr13 76842457 76842818 -42902080 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr13 76843263 76843294 -42901604 + AT_rich Low_complexity Low_complexity 1 31 0 276 273 0 0 chr13 76843422 76843499 -42901399 + (TA)n Simple_repeat Simple_repeat 1 77 0 1780 159 40 10 chr13 76844472 76844768 -42900130 - AluJo SINE Alu -7 305 1 268 214 135 34 chr13 76845515 76845604 -42899294 - L2 LINE L2 -6 3266 3169 441 325 19 19 chr13 76845905 76846062 -42898836 + MIR3 SINE MIR 45 201 -7 23 33 0 0 chr13 76846418 76846448 -42898450 + AT_rich Low_complexity Low_complexity 1 30 0 204 273 18 0 chr13 76846624 76846679 -42898219 - MIR SINE MIR -64 144 89 23 33 0 0 chr13 76846841 76846871 -42898027 + AT_rich Low_complexity Low_complexity 1 30 0 2283 136 5 16 chr13 76848143 76848519 -42896379 - L1PA15 LINE L1 -1 6164 5793 381 270 22 86 chr13 76848908 76849130 -42895768 - L1M4 LINE L1 -2957 3189 2982 697 321 112 33 chr13 76849174 76849775 -42895123 - L1M4 LINE L1 -3269 2877 2230 769 149 0 35 chr13 76849812 76849953 -42894945 + FRAM SINE Alu 41 176 0 207 154 51 0 chr13 76850049 76850088 -42894810 - L2 LINE L2 0 3313 3273 1698 180 3 14 chr13 76851036 76851331 -42893567 - AluJb SINE Alu -20 292 1 1895 121 0 46 chr13 76852190 76852495 -42892403 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr13 76852495 76852517 -42892381 + AT_rich Low_complexity Low_complexity 1 22 0 2022 140 0 3 chr13 76852531 76852840 -42892058 + AluSx SINE Alu 1 308 0 359 294 0 0 chr13 76852857 76852949 -42891949 - L1MC4 LINE L1 -1338 6704 6613 24 53 0 0 chr13 76853184 76853222 -42891676 + AT_rich Low_complexity Low_complexity 1 38 0 822 251 48 30 chr13 76854436 76854667 -42890231 - MIR SINE MIR 0 262 28 253 228 0 35 chr13 76855819 76855876 -42889022 + Alu SINE Alu 226 280 -20 259 284 0 30 chr13 76856452 76856519 -42888379 + MIR3 SINE MIR 108 172 -36 22 0 0 0 chr13 76857222 76857244 -42887654 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 76857482 76857503 -42887395 + AT_rich Low_complexity Low_complexity 1 21 0 2354 51 3 55 chr13 76858249 76858561 -42886337 + AluY SINE Alu 1 296 -15 786 211 4 103 chr13 76858833 76859094 -42885804 + L1MC4 LINE L1 7808 8042 0 1091 300 70 6 chr13 76859179 76859663 -42885235 + L1ME3A LINE L1 5623 6137 -33 500 218 76 2 chr13 76860755 76860914 -42883984 + L1ME3A LINE L1 5728 5901 -303 26 0 0 0 chr13 76860987 76861013 -42883885 + AT_rich Low_complexity Low_complexity 1 26 0 227 192 39 103 chr13 76865998 76866076 -42878822 - MIR3 SINE MIR -32 176 104 3173 239 78 73 chr13 76866339 76867853 -42877045 - HAL1 LINE L1 0 2507 986 688 285 34 14 chr13 76867926 76868133 -42876765 - MIR SINE MIR -8 254 44 1952 148 0 20 chr13 76868718 76869023 -42875875 + AluJo SINE Alu 1 299 -13 462 319 26 16 chr13 76869781 76869957 -42874941 - MIR SINE MIR -65 143 16 637 162 0 18 chr13 76870052 76870163 -42874735 - MER5A DNA MER1_type -22 167 59 2132 223 93 4 chr13 76871038 76871599 -42873299 - L1MC4 LINE L1 -139 7903 7293 804 238 125 8 chr13 76871643 76871899 -42872999 - L1MC4 LINE L1 -956 7086 6801 363 264 8 32 chr13 76871907 76872032 -42872866 - L1MC4 LINE L1 -1339 6703 6582 251 54 0 0 chr13 76872047 76872084 -42872814 - L1PB1 LINE L1 0 6151 6115 207 0 0 0 chr13 76872086 76872109 -42872789 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1387 121 0 10 chr13 76872109 76872308 -42872590 - AluSg/x SINE Alu -31 279 83 269 93 23 0 chr13 76872308 76872351 -42872547 - L1PB1 LINE L1 -27 6124 6081 * 441 219 141 0 chr13 76872347 76872475 -42872423 - L1MC4 LINE L1 -1449 6593 6448 2584 130 52 2 chr13 76873015 76873423 -42871475 + MSTA LTR MaLR 1 428 0 2362 92 0 0 chr13 76873623 76873918 -42870980 + AluSc SINE Alu 1 295 -14 1380 156 26 115 chr13 76873928 76874275 -42870623 + AluYb8 SINE Alu 1 316 -2 374 78 0 0 chr13 76875406 76875457 -42869441 + MADE1 DNA Mariner 30 80 0 291 261 58 0 chr13 76875911 76875980 -42868918 + L2 LINE L2 3199 3271 -1 1986 98 38 11 chr13 76877091 76877378 -42867520 - AluSg SINE Alu -15 295 1 21 57 0 0 chr13 76878002 76878037 -42866861 + AT_rich Low_complexity Low_complexity 1 35 0 2422 76 3 0 chr13 76878171 76878473 -42866425 + AluSp SINE Alu 1 303 -10 352 182 7 0 chr13 76879319 76879395 -42865503 + AluS SINE Alu 1 57 -246 1353 108 5 0 chr13 76879528 76879722 -42865176 + AluSg/x SINE Alu 107 301 -11 23 0 0 0 chr13 76880146 76880169 -42864729 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 76880345 76880366 -42864532 + AT_rich Low_complexity Low_complexity 1 21 0 2087 87 22 0 chr13 76881010 76881314 -42863584 - AluSp SINE Alu 0 314 5 2083 109 0 27 chr13 76881328 76881655 -42863243 - AluSq SINE Alu 0 319 1 354 247 145 54 chr13 76882605 76882791 -42862107 + MIR SINE MIR 31 233 -29 244 239 92 64 chr13 76882997 76883106 -42861792 + MER69A DNA AcHobo 15 126 -51 1000 121 0 0 chr13 76883117 76883258 -42861640 + FLAM_C SINE Alu 1 141 -2 289 213 147 0 chr13 76883588 76883663 -42861235 + L1MD3 LINE L1 7890 7975 -20 4416 63 19 2 chr13 76883664 76884239 -42860659 - L1PA7 LINE L1 0 6154 5570 442 297 162 25 chr13 76884348 76884894 -42860004 - L1ME3A LINE L1 -280 5884 5259 398 341 80 12 chr13 76884954 76885203 -42859695 - L1ME3A LINE L1 -977 5169 4904 1809 179 0 16 chr13 76885360 76885673 -42859225 + AluJb SINE Alu 1 308 -4 456 335 51 19 chr13 76885853 76886011 -42858887 + L2 LINE L2 3102 3264 -8 258 257 0 40 chr13 76886318 76886392 -42858506 - L2 LINE L2 -1 3312 3242 280 0 24 24 chr13 76886421 76886462 -42858436 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 378 0 0 0 chr13 76886461 76886503 -42858395 + (TG)n Simple_repeat Simple_repeat 2 43 0 253 295 114 29 chr13 76888777 76888882 -42856016 - L3b LINE CR1 -11 1572 1459 3416 38 14 5 chr13 76888927 76889353 -42855545 - L1PA4 LINE L1 -3 6152 5723 209 105 0 26 chr13 76890108 76890146 -42854752 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 207 266 31 16 chr13 76891135 76891199 -42853699 - L2 LINE L2 -214 3058 2994 200 426 33 5 chr13 76891809 76892020 -42852878 - L2 LINE L2 -622 2692 2476 214 364 123 0 chr13 76892266 76892453 -42852445 + L2 LINE L2 2118 2327 -987 180 231 74 91 chr13 76895690 76895811 -42849087 - L2 LINE L2 -2 3311 3193 1670 144 7 62 chr13 76896078 76896370 -42848528 + AluJb SINE Alu 7 282 -30 207 0 0 0 chr13 76896373 76896396 -42848502 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1654 144 7 62 chr13 76896839 76897131 -42847767 + AluJb SINE Alu 7 282 -30 207 0 0 0 chr13 76897134 76897157 -42847741 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 28 29 0 0 chr13 76897916 76897951 -42846947 + AT_rich Low_complexity Low_complexity 1 35 0 517 132 13 0 chr13 76898727 76898803 -42846095 + AluJb SINE Alu 206 282 -30 1910 131 7 3 chr13 76899650 76899947 -42844951 - AluSx SINE Alu -14 298 1 1057 237 67 6 chr13 76901287 76901599 -42843299 + L1ME LINE L1 5391 5721 -445 464 146 101 0 chr13 76901599 76901688 -42843210 + MER4A LTR ERV1 1 98 -566 1425 142 22 78 chr13 76901688 76902054 -42842844 + MER4A LTR ERV1 261 664 0 316 206 0 0 chr13 76902059 76902122 -42842776 + L1ME LINE L1 5723 5785 -381 1674 101 3 98 chr13 76902122 76902438 -42842460 - MER4B LTR ERV1 0 610 325 418 240 42 0 chr13 76902439 76902535 -42842363 + L2 LINE L2 2841 2940 -374 344 154 0 0 chr13 76902566 76902618 -42842280 - Tigger7 DNA MER2_type -650 83 32 228 241 54 71 chr13 76904552 76904664 -42840234 + MIR3 SINE MIR 88 197 -11 203 231 33 88 chr13 76906454 76906545 -42838353 - MIR3 SINE MIR -1 207 122 2172 126 0 16 chr13 76907029 76907338 -42837560 + AluSx SINE Alu 1 304 -8 1547 177 7 28 chr13 76907487 76907770 -42837128 + AluJb SINE Alu 5 281 -31 252 0 0 0 chr13 76907770 76907798 -42837100 + (CA)n Simple_repeat Simple_repeat 1 28 0 226 336 69 8 chr13 76907931 76908062 -42836836 + MIR SINE MIR 109 247 -15 3446 269 152 21 chr13 76908134 76909146 -42835752 - L2 LINE L2 -89 3224 2346 203 53 0 53 chr13 76909146 76909184 -42835714 + (CAGAGA)n Simple_repeat Simple_repeat 4 39 0 3446 269 152 21 chr13 76909184 76909829 -42835069 - L2 LINE L2 -967 2346 1352 2159 119 0 3 chr13 76910547 76910842 -42834056 - AluSx SINE Alu -18 294 1 21 36 0 0 chr13 76911078 76911106 -42833792 + AT_rich Low_complexity Low_complexity 1 28 0 447 218 62 98 chr13 76914578 76914803 -42830095 - MLT1J LTR MaLR -7 504 288 527 258 82 21 chr13 76914919 76915113 -42829785 - MLT1J LTR MaLR -299 212 7 2259 111 0 16 chr13 76915492 76915799 -42829099 - AluSx SINE Alu -10 302 1 21 71 0 0 chr13 76915938 76915980 -42828918 + AT_rich Low_complexity Low_complexity 1 42 0 226 167 56 0 chr13 76916762 76916834 -42828064 + (TA)n Simple_repeat Simple_repeat 2 77 0 277 118 0 66 chr13 76916868 76916944 -42827954 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 220 322 0 0 chr13 76918271 76918330 -42826568 - MIR SINE MIR -71 137 79 216 97 0 0 chr13 76918366 76918397 -42826501 + (CA)n Simple_repeat Simple_repeat 2 32 0 359 395 32 0 chr13 76918494 76918651 -42826247 + L2 LINE L2 3110 3271 -1 196 237 88 124 chr13 76919388 76919582 -42825316 - L2 LINE L2 -1 3312 3126 229 308 84 71 chr13 76919762 76920169 -42824729 + L2 LINE L2 2562 2973 -299 21 71 0 0 chr13 76920251 76920293 -42824605 + AT_rich Low_complexity Low_complexity 1 42 0 1482 176 50 24 chr13 76920295 76920675 -42824223 + Charlie5 DNA MER1_type 2235 2624 0 1852 161 0 13 chr13 76920748 76921053 -42823845 + AluSx SINE Alu 1 301 -11 189 174 22 43 chr13 76921110 76921156 -42823742 + L2 LINE L2 3269 3313 0 1441 140 193 3 chr13 76921209 76921390 -42823508 + MER44D DNA MER2_type 1 146 -2345 192 77 0 0 chr13 76921390 76921416 -42823482 + (TATG)n Simple_repeat Simple_repeat 3 28 0 1441 140 193 3 chr13 76921416 76921519 -42823379 + MER44D DNA MER2_type 146 609 0 800 41 236 0 chr13 76921690 76921813 -42823085 + L1PA4 LINE L1 6000 6151 -4 1965 112 17 44 chr13 76921849 76922144 -42822754 + AluSx SINE Alu 1 287 -25 29 28 0 0 chr13 76922567 76922603 -42822295 + AT_rich Low_complexity Low_complexity 1 36 0 613 172 35 55 chr13 76923361 76923506 -42821392 - MIR SINE MIR 0 262 121 21 0 0 0 chr13 76923721 76923742 -42821156 + AT_rich Low_complexity Low_complexity 1 21 0 2247 95 0 0 chr13 76924085 76924370 -42820528 - AluY SINE Alu 0 311 27 3020 197 138 7 chr13 76924677 76925539 -42819359 - Charlie1 DNA MER1_type -38 2723 1749 568 226 129 7 chr13 76925539 76925694 -42819204 - MLT1D LTR MaLR 0 505 332 1703 199 0 7 chr13 76926178 76926479 -42818419 - AluJo SINE Alu -13 299 1 314 345 97 72 chr13 76926580 76926942 -42817956 + L2 LINE L2 2866 3236 -36 2468 69 0 3 chr13 76926951 76927257 -42817641 - AluY SINE Alu -6 305 1 25 0 0 0 chr13 76927544 76927569 -42817329 + AT_rich Low_complexity Low_complexity 1 25 0 197 33 33 0 chr13 76928662 76928692 -42816206 + (TTA)n Simple_repeat Simple_repeat 1 31 0 209 279 7 118 chr13 76929875 76930011 -42814887 - MER5A DNA MER1_type 0 189 69 * 228 246 46 123 chr13 76929948 76930078 -42814820 + MER5B DNA MER1_type 59 178 0 242 149 11 172 chr13 76930272 76930359 -42814539 + L2 LINE L2 2355 2427 -887 3079 121 34 6 chr13 76930679 76931176 -42813722 + MER9 LTR ERVK 1 511 0 686 270 76 25 chr13 76931494 76931731 -42813167 - MIR SINE MIR -8 254 6 301 359 19 0 chr13 76931752 76931858 -42813040 + L2 LINE L2 3142 3249 -23 264 186 0 0 chr13 76931870 76931929 -42812969 + (TGAA)n Simple_repeat Simple_repeat 1 59 0 184 333 69 11 chr13 76931965 76932052 -42812846 - MIR SINE MIR -97 111 20 2414 153 59 32 chr13 76932068 76932665 -42812233 + MER4B LTR ERV1 1 779 0 2167 104 6 25 chr13 76933089 76933405 -42811493 + AluSg SINE Alu 1 310 0 335 331 166 31 chr13 76934916 76935266 -42809632 - L2 LINE L2 -368 2946 2550 931 205 10 31 chr13 76935286 76935481 -42809417 + AluJo SINE Alu 1 191 -121 2369 103 0 0 chr13 76935620 76935931 -42808967 - AluSx SINE Alu -1 311 1 1904 138 13 10 chr13 76935996 76936300 -42808598 - AluSx SINE Alu -7 305 1 30 0 0 0 chr13 76936583 76936613 -42808285 + AT_rich Low_complexity Low_complexity 1 30 0 1855 151 24 3 chr13 76936755 76937046 -42807852 - AluSx SINE Alu -15 297 1 792 194 56 39 chr13 76937214 76937394 -42807504 - MER5A DNA MER1_type 0 189 7 756 202 35 12 chr13 76937432 76937605 -42807293 + MER58A DNA MER1_type 48 224 0 367 245 108 49 chr13 76937611 76937744 -42807154 - MIR SINE MIR -61 147 40 381 240 10 39 chr13 76937763 76937867 -42807031 + L2 LINE L2 2222 2322 -992 1879 51 55 0 chr13 76938091 76938328 -42806570 - AluY SINE Alu -17 294 45 657 148 8 74 chr13 76938395 76938517 -42806381 + FLAM_C SINE Alu 5 118 -15 212 283 28 57 chr13 76942379 76942485 -42802413 + MIR SINE MIR 52 154 -108 469 112 7 0 chr13 76942494 76942571 -42802327 - LTR54 LTR ERV1 -375 135 54 255 365 87 74 chr13 76942730 76943042 -42801856 - L2 LINE L2 -5 3267 2952 280 180 0 16 chr13 76943049 76943110 -42801788 - MLT1K LTR MaLR -18 570 511 270 118 132 0 chr13 76943501 76943569 -42801329 - L1 LINE L1 -919 5227 5151 1152 147 0 0 chr13 76943723 76943886 -42801012 - AluSq SINE Alu -150 163 1 6110 87 72 0 chr13 76944098 76945066 -42799832 - L1PA14 LINE L1 -7 6154 5152 3722 222 100 38 chr13 76945805 76946211 -42798687 + L1MC4 LINE L1 6674 7053 -989 2303 120 46 3 chr13 76946211 76946560 -42798338 + THE1B LTR MaLR 1 364 0 3722 222 100 38 chr13 76946560 76946613 -42798285 + L1MC4 LINE L1 7053 7101 -941 2004 152 3 7 chr13 76946613 76946915 -42797983 + AluJb SINE Alu 1 301 -11 3722 222 100 38 chr13 76946915 76947754 -42797144 + L1MC4 LINE L1 7101 8042 0 23 0 0 0 chr13 76949092 76949115 -42795783 + AT_rich Low_complexity Low_complexity 1 23 0 376 268 155 30 chr13 76949168 76949336 -42795562 - MIR SINE MIR -62 200 12 198 234 64 0 chr13 76950713 76950760 -42794138 + L2 LINE L2 3261 3310 -3 446 225 73 20 chr13 76950821 76950972 -42793926 - L1MC3 LINE L1 0 7785 7627 508 194 19 0 chr13 76951405 76951513 -42793385 - L1MC3 LINE L1 -18 7767 7658 1488 142 8 0 chr13 76951517 76951770 -42793128 - L1MC3 LINE L1 -212 7573 7319 2208 93 7 20 chr13 76952422 76952724 -42792174 - AluSx SINE Alu -14 298 1 387 0 0 0 chr13 76955269 76955312 -42789586 + (TG)n Simple_repeat Simple_repeat 2 44 0 201 39 0 0 chr13 76956233 76956259 -42788639 + (CAA)n Simple_repeat Simple_repeat 2 27 0 318 296 30 59 chr13 76956854 76956989 -42787909 - MIR3 SINE MIR -10 198 68 273 328 45 55 chr13 76957071 76957201 -42787697 - L2 LINE L2 -456 2858 2728 2306 75 0 30 chr13 76957201 76957506 -42787392 + AluY SINE Alu 1 296 -15 273 328 45 55 chr13 76957506 76957778 -42787120 - L2 LINE L2 -586 2728 2460 277 245 85 0 chr13 76958139 76958233 -42786665 - HAL1 LINE L1 -359 2148 2047 321 279 41 7 chr13 76958406 76958553 -42786345 - HAL1 LINE L1 -731 1776 1625 2194 119 3 0 chr13 76959543 76959853 -42785045 - AluSx SINE Alu -1 311 1 268 140 40 0 chr13 76960484 76960534 -42784364 + L2 LINE L2 3216 3267 -5 2226 102 16 0 chr13 76961448 76961752 -42783146 - AluSp SINE Alu -4 309 1 21 36 0 0 chr13 76961756 76961784 -42783114 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 76962013 76962036 -42782862 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr13 76962245 76962285 -42782613 + (TG)n Simple_repeat Simple_repeat 2 41 0 1779 153 7 27 chr13 76962462 76962762 -42782136 + AluJo SINE Alu 1 294 -18 293 322 0 0 chr13 76962762 76962849 -42782049 + GA-rich Low_complexity Low_complexity 1 87 0 352 299 67 62 chr13 76963246 76963664 -42781234 - L2 LINE L2 -90 3223 2804 * 1058 248 19 19 chr13 76963639 76963954 -42780944 - L2 LINE L2 -1079 2235 1921 180 260 52 83 chr13 76964167 76964263 -42780635 + L2 LINE L2 3180 3272 0 559 161 40 32 chr13 76965168 76965292 -42779606 - L1MB5 LINE L1 -6 6168 6044 34 55 0 0 chr13 76967291 76967346 -42777552 + AT_rich Low_complexity Low_complexity 1 55 0 2170 121 0 0 chr13 76967723 76968020 -42776878 + AluSx SINE Alu 1 297 -15 922 194 13 0 chr13 76968169 76968324 -42776574 - AluJb SINE Alu -16 296 140 338 119 51 0 chr13 76968324 76968383 -42776515 + AluJo SINE Alu 73 134 -168 336 231 0 0 chr13 76968394 76968459 -42776439 - AluJ/FLAM SINE Alu -237 65 1 2324 202 60 49 chr13 76969894 76970664 -42774234 + LTR1B LTR ERV1 1 772 -13 316 338 36 29 chr13 76970683 76970822 -42774076 + MER5A DNA MER1_type 43 182 -7 830 203 10 53 chr13 76970987 76971194 -42773704 + MER20 DNA MER1_type 1 198 -21 2734 231 82 6 chr13 76971276 76972229 -42772669 - L1ME3 LINE L1 -73 6089 5072 539 231 60 0 chr13 76972369 76972486 -42772412 + FLAM_A SINE Alu 1 124 -9 186 306 0 0 chr13 76972592 76972641 -42772257 - L2 LINE L2 -4 3268 3220 1750 170 7 3 chr13 76972692 76972992 -42771906 - AluJb SINE Alu -11 301 1 2224 77 0 61 chr13 76973172 76973483 -42771415 - AluSc SINE Alu -17 292 1 338 219 0 12 chr13 76973768 76973850 -42771048 - L1ME3 LINE L1 -2954 3192 3112 1530 163 25 15 chr13 76973886 76974212 -42770686 - L1MA8 LINE L1 -2 6289 5961 2188 129 0 0 chr13 76974217 76974511 -42770387 - AluSx SINE Alu -18 294 1 425 345 23 39 chr13 76974599 76974857 -42770041 + MLT1K LTR MaLR 117 370 -218 191 287 138 0 chr13 76976881 76976968 -42767930 - L2 LINE L2 0 3313 3215 183 121 0 0 chr13 76977404 76977432 -42767466 + (TC)n Simple_repeat Simple_repeat 2 30 0 1745 163 0 7 chr13 76977432 76977714 -42767184 - AluSx SINE Alu -32 280 1 413 238 65 130 chr13 76977930 76978300 -42766598 - MLT1I LTR MaLR -9 400 55 1684 118 114 11 chr13 76978365 76978645 -42766253 + AluSg1 SINE Alu 1 309 0 183 129 0 0 chr13 76980000 76980031 -42764867 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr13 76980668 76980698 -42764200 + GC_rich Low_complexity Low_complexity 1 30 0 312 158 0 0 chr13 76981320 76981377 -42763521 + (TG)n Simple_repeat Simple_repeat 1 57 0 1136 71 0 0 chr13 76982185 76982326 -42762572 - AluSg/x SINE Alu -18 294 154 653 290 57 29 chr13 76983075 76983354 -42761544 - Charlie8 DNA MER1_type -2130 287 1 440 271 8 8 chr13 76983856 76983985 -42760913 + MER94 DNA DNA 3 131 -3 492 180 280 20 chr13 76985314 76985464 -42759434 - MER5A DNA MER1_type 0 189 1 1601 139 74 56 chr13 76985769 76985958 -42758940 + MER46B DNA MER2_type 16 90 -2641 2393 97 0 0 chr13 76985958 76986268 -42758630 - AluSx SINE Alu -2 310 1 1601 139 74 56 chr13 76986268 76986416 -42758482 + MER46B DNA MER2_type 90 234 -2 409 176 14 14 chr13 76986645 76986719 -42758179 - AluJo SINE Alu -138 174 101 200 171 71 0 chr13 76986723 76986793 -42758105 + (TA)n Simple_repeat Simple_repeat 2 76 0 403 247 228 6 chr13 76986911 76987073 -42757825 - MIR SINE MIR 0 262 65 295 264 35 62 chr13 76987218 76987362 -42757536 + MER77 LTR ERV1 66 205 -400 483 243 18 81 chr13 76987388 76987648 -42757250 + MER21B LTR ERV1 144 388 -217 2101 128 7 3 chr13 76988334 76988631 -42756267 + AluSx SINE Alu 1 298 -14 276 77 0 0 chr13 76988647 76988686 -42756212 + (TG)n Simple_repeat Simple_repeat 2 40 0 1223 109 64 0 chr13 76988687 76988907 -42755991 + MER44D DNA MER2_type 20 523 -86 231 232 0 0 chr13 76988935 76988991 -42755907 + (TA)n Simple_repeat Simple_repeat 2 57 0 367 225 25 0 chr13 76988997 76989077 -42755821 + MER44D DNA MER2_type 528 609 0 21 0 0 0 chr13 76989156 76989177 -42755721 + AT_rich Low_complexity Low_complexity 1 21 0 2012 93 4 15 chr13 76989635 76989904 -42754994 - AluSp SINE Alu -15 298 33 219 322 33 33 chr13 76990001 76990091 -42754807 - L2 LINE L2 -1 3312 3223 3226 134 6 6 chr13 76990099 76990599 -42754299 - MER1A DNA MER1_type 0 529 30 260 232 18 0 chr13 76990603 76990659 -42754239 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 253 54 0 27 chr13 76990687 76990724 -42754174 + (CA)n Simple_repeat Simple_repeat 2 37 0 2372 66 10 3 chr13 76990945 76991234 -42753664 - AluSc SINE Alu -18 291 1 972 65 72 13 chr13 76991234 76991387 -42753511 - MER30 DNA MER1_type -68 162 1 565 208 42 73 chr13 76991720 76991912 -42752986 + Charlie6 DNA MER1_type 55 240 -3260 626 204 136 0 chr13 76991979 76992141 -42752757 + Charlie6 DNA MER1_type 1632 1815 -1685 255 333 20 0 chr13 76992279 76992432 -42752466 + (TG)n Simple_repeat Simple_repeat 2 157 0 2269 113 0 3 chr13 76992615 76992916 -42751982 + AluSx SINE Alu 1 300 -12 679 104 0 10 chr13 76993471 76993567 -42751331 - AluJ/FLAM SINE Alu -215 97 3 899 142 57 6 chr13 76995304 76995480 -42749418 + L1MB2 LINE L1 5987 6171 0 1326 200 55 35 chr13 76995494 76995784 -42749114 + AluJo SINE Alu 15 310 -2 284 296 12 12 chr13 76995959 76996040 -42748858 - L2 LINE L2 -244 3028 2948 237 33 0 0 chr13 76996621 76996651 -42748247 + (CA)n Simple_repeat Simple_repeat 1 30 0 204 386 131 39 chr13 76997287 76997676 -42747222 - L2 LINE L2 0 3272 2848 2110 142 0 0 chr13 76998759 76999069 -42745829 - AluSx SINE Alu -2 310 1 379 217 60 0 chr13 76999285 76999368 -42745530 - MIR SINE MIR -78 184 97 231 36 0 0 chr13 76999581 76999609 -42745289 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 218 248 66 57 chr13 76999613 76999750 -42745148 - L2 LINE L2 -16 3297 3083 1479 202 25 3 chr13 77000540 77000822 -42744076 + AluJo SINE Alu 1 288 -24 318 313 84 22 chr13 77000862 77001041 -42743857 - L2 LINE L2 -908 2406 2217 463 307 110 19 chr13 77001219 77001659 -42743239 - LTR33 LTR ERVL 0 521 1 1559 91 0 0 chr13 77001808 77002006 -42742892 + AluSq SINE Alu 1 198 -115 798 320 59 103 chr13 77002348 77003297 -42741601 - L2 LINE L2 -1095 2219 1313 1578 223 44 25 chr13 77003732 77004095 -42740803 + MLT1A2 LTR MaLR 2 371 -3 1901 149 0 0 chr13 77004961 77005262 -42739636 + AluJb SINE Alu 1 301 0 2232 97 10 6 chr13 77005325 77005636 -42739262 + AluSp SINE Alu 1 312 -1 376 281 59 73 chr13 77005636 77005869 -42739029 + HAL1b LINE L1 26 256 -1092 1854 168 3 3 chr13 77005869 77006178 -42738720 + AluJo SINE Alu 1 309 -3 376 281 59 73 chr13 77006178 77006275 -42738623 + HAL1b LINE L1 256 353 -995 421 173 0 77 chr13 77006305 77006409 -42738489 - L1PA16 LINE L1 -108 6058 5963 245 298 48 69 chr13 77006410 77006598 -42738300 + HAL1 LINE L1 1427 1610 -897 632 214 0 0 chr13 77006853 77006970 -42737928 + FAM SINE Alu 4 120 -65 1949 109 46 17 chr13 77007071 77007373 -42737525 + AluSx SINE Alu 2 312 0 411 275 0 0 chr13 77007967 77008058 -42736840 - Charlie8 DNA MER1_type -2173 244 154 940 233 84 86 chr13 77008799 77009162 -42735736 - L1MC5 LINE L1 -74 7887 7525 2027 147 0 3 chr13 77009162 77009469 -42735429 - AluSx SINE Alu -6 306 1 940 233 84 86 chr13 77009469 77009651 -42735247 - L1MC5 LINE L1 -436 7525 7341 777 176 112 21 chr13 77009651 77009838 -42735060 + MER3 DNA MER1_type 2 205 -4 940 233 84 86 chr13 77009838 77009883 -42735015 - L1MC5 LINE L1 -620 7341 7297 326 220 64 57 chr13 77009905 77010046 -42734852 - L1MC5 LINE L1 -648 7313 7172 367 222 93 66 chr13 77010046 77010425 -42734473 - L1MC5 LINE L1 -32 7929 7562 2629 130 6 0 chr13 77010425 77010787 -42734111 - THE1B LTR MaLR 0 364 1 367 222 93 66 chr13 77010787 77010919 -42733979 - L1MC5 LINE L1 -399 7562 6727 * 706 208 15 0 chr13 77010914 77011044 -42733854 - L1MD3 LINE L1 -462 7533 7402 325 129 11 129 chr13 77011056 77011149 -42733749 - MLT1F1 LTR MaLR -450 117 36 1697 161 21 27 chr13 77011153 77011482 -42733416 - L1MD3 LINE L1 -880 7115 6789 2287 98 0 0 chr13 77012066 77012362 -42732536 + AluSg SINE Alu 1 296 -14 222 380 12 18 chr13 77012624 77012787 -42732111 + L2 LINE L2 1216 1377 -1937 2399 70 3 16 chr13 77012848 77013162 -42731736 - AluY SINE Alu -1 310 1 746 169 7 29 chr13 77013174 77013310 -42731588 - FLAM_C SINE Alu 0 133 1 714 218 64 0 chr13 77013324 77013480 -42731418 - LTR67 LTR ERVL 0 557 392 790 257 101 29 chr13 77013555 77013862 -42731036 + MLT1I LTR MaLR 61 389 -20 1807 193 10 105 chr13 77014194 77014707 -42730191 + MER101 LTR ERV1 11 474 0 1287 225 67 3 chr13 77014964 77015248 -42729650 + L1MC4 LINE L1 7407 7708 -334 3953 181 68 37 chr13 77015248 77016723 -42728175 - MER52A LTR ERV1 0 1755 1 534 206 88 7 chr13 77016723 77016859 -42728039 + L1MC4 LINE L1 7705 7851 -191 564 213 0 0 chr13 77016893 77017035 -42727863 - AluSg/x SINE Alu 0 329 188 1319 153 10 5 chr13 77017035 77017244 -42727654 + AluJb SINE Alu 85 294 -18 5108 139 5 34 chr13 77017244 77018107 -42726791 - L1MB1 LINE L1 -6 6162 5325 1115 131 0 12 chr13 77018107 77018267 -42726631 - FRAM SINE Alu -16 160 3 592 198 32 11 chr13 77018275 77018421 -42726477 - L1 LINE L1 -852 5294 5150 29 47 0 0 chr13 77018630 77018673 -42726225 + AT_rich Low_complexity Low_complexity 1 43 0 743 241 111 24 chr13 77019401 77019608 -42725290 + MIR SINE MIR 6 230 -32 430 125 25 25 chr13 77019763 77019843 -42725055 - MADE1 DNA Mariner 0 80 1 328 229 43 0 chr13 77019939 77020009 -42724889 - AluSp SINE Alu -96 207 135 1763 178 20 10 chr13 77020929 77021227 -42723671 - AluJb SINE Alu -11 301 1 2513 137 12 53 chr13 77021437 77021854 -42723044 + MER57A LTR ERV1 4 403 0 485 188 0 0 chr13 77022163 77022248 -42722650 + L2 LINE L2 3229 3313 0 787 266 133 7 chr13 77022847 77023155 -42721743 - L1ME3A LINE L1 -298 5872 5526 189 107 0 0 chr13 77023284 77023312 -42721586 + (A)n Simple_repeat Simple_repeat 1 28 0 588 244 100 17 chr13 77023566 77023586 -42721312 + MLT1J LTR MaLR 5 22 -489 2120 117 88 20 chr13 77023586 77023927 -42720971 - THE1B LTR MaLR 0 364 1 588 244 100 17 chr13 77023927 77024086 -42720812 + MLT1J LTR MaLR 22 199 -312 348 274 47 28 chr13 77024134 77024240 -42720658 + MLT1J LTR MaLR 279 386 -125 463 316 72 24 chr13 77024518 77024727 -42720171 - MER20 DNA MER1_type 0 219 1 1646 199 11 70 chr13 77024816 77025172 -42719726 + MSTD LTR MaLR 1 335 -61 517 121 73 24 chr13 77025174 77025378 -42719520 + AluY SINE Alu 2 303 -8 320 142 32 0 chr13 77025410 77025474 -42719424 + MSTB2 LTR MaLR 322 457 0 1722 188 0 13 chr13 77025618 77025922 -42718976 + AluJb SINE Alu 1 300 -12 2627 151 19 2 chr13 77026130 77026562 -42718336 + L1MC1 LINE L1 5769 6207 -126 4267 149 113 87 chr13 77026562 77027931 -42716967 + pTR5 LTR ERV1 743 2295 -143 516 122 99 68 chr13 77027943 77028078 -42716820 + L1MC1 LINE L1 6204 6344 0 2390 135 97 5 chr13 77028131 77028523 -42716375 + MSTA LTR MaLR 1 428 0 9189 180 30 2 chr13 77028524 77030116 -42714782 + MSTA-int LTR MaLR 2 1637 -14 2697 118 80 5 chr13 77030130 77030528 -42714370 + MSTA LTR MaLR 1 428 0 428 273 50 0 chr13 77030751 77030850 -42714048 - MER94 DNA DNA -2 132 29 638 235 132 0 chr13 77031177 77031313 -42713585 - AluJo SINE Alu -37 275 122 5133 156 97 8 chr13 77031337 77032346 -42712552 + L1MC3 LINE L1 6161 6344 0 2372 97 3 0 chr13 77032358 77032669 -42712229 + AluSx SINE Alu 1 312 0 1967 157 0 10 chr13 77033063 77033363 -42711535 - AluSx SINE Alu -9 303 7 300 289 72 0 chr13 77033955 77034052 -42710846 - L1 LINE L1 -1304 4842 4739 23 0 0 0 chr13 77034375 77034398 -42710500 + AT_rich Low_complexity Low_complexity 1 23 0 243 229 10 35 chr13 77034519 77034622 -42710276 - L1MB4 LINE L1 -25 6159 6059 21 0 0 0 chr13 77034632 77034653 -42710245 + AT_rich Low_complexity Low_complexity 1 21 0 188 330 64 32 chr13 77035086 77035180 -42709718 - L2 LINE L2 -33 3280 3184 263 247 32 21 chr13 77035207 77035300 -42709598 - MLT1J LTR MaLR -4 507 414 246 123 15 62 chr13 77035759 77035824 -42709074 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 2907 140 36 17 chr13 77035825 77036184 -42708714 + L1MA9 LINE L1 5783 6157 -155 342 67 0 0 chr13 77036184 77036229 -42708669 + (CA)n Simple_repeat Simple_repeat 1 45 0 2907 140 36 17 chr13 77036229 77036389 -42708509 + L1MA9 LINE L1 6157 6312 0 590 141 0 0 chr13 77036709 77036787 -42708111 + AluS SINE Alu 2 79 -234 1787 118 0 37 chr13 77036790 77037060 -42707838 + AluSq SINE Alu 49 308 -5 2634 58 0 3 chr13 77037421 77037733 -42707165 + AluY SINE Alu 1 311 0 405 294 104 40 chr13 77038875 77039076 -42705822 - MIR SINE MIR -36 226 13 239 259 247 0 chr13 77039194 77039279 -42705619 + L2 LINE L2 3165 3270 -2 1185 247 171 39 chr13 77039696 77040459 -42704439 + L1ME3 LINE L1 5267 6141 -21 1338 86 0 0 chr13 77040733 77040896 -42704002 + AluY SINE Alu 2 164 -147 2467 68 0 7 chr13 77041105 77041414 -42703484 - AluY SINE Alu -4 307 1 1846 128 23 36 chr13 77041467 77041771 -42703127 + AluJb SINE Alu 1 300 -12 769 197 0 0 chr13 77042150 77042277 -42702621 - AluJb SINE Alu -10 302 176 1006 257 200 18 chr13 77043082 77043750 -42701148 - L2 LINE L2 -36 3277 2475 1259 165 141 0 chr13 77043754 77044002 -42700896 - L1MCa LINE L1 -6125 301 19 1474 191 50 7 chr13 77044074 77044356 -42700542 - AluJo SINE Alu -18 294 1 1628 154 50 3 chr13 77044547 77044959 -42699939 + MLT1D LTR MaLR 1 459 -46 1077 219 144 38 chr13 77046616 77047013 -42697885 - L1MC4 LINE L1 0 8042 7604 1158 208 84 111 chr13 77047088 77047412 -42697486 - MLT1E2 LTR MaLR -186 440 130 1870 139 0 69 chr13 77047412 77047729 -42697169 - AluSx SINE Alu -17 295 1 1158 208 84 111 chr13 77047729 77047846 -42697052 - MLT1E2 LTR MaLR -496 130 11 376 192 14 0 chr13 77047870 77047943 -42696955 + MIR SINE MIR 162 235 -27 2234 103 3 3 chr13 77048152 77048453 -42696445 - AluSx SINE Alu -11 301 1 438 36 0 0 chr13 77048508 77048564 -42696334 + (CA)n Simple_repeat Simple_repeat 2 57 0 246 205 57 98 chr13 77049119 77049151 -42695747 - MLT1K LTR MaLR -2 586 554 972 200 49 73 chr13 77049151 77049396 -42695502 + MER8 DNA MER2_type 1 239 0 246 205 57 98 chr13 77049396 77049485 -42695413 - MLT1K LTR MaLR -34 554 470 432 195 13 0 chr13 77049989 77050066 -42694832 + MLT1D LTR MaLR 1 78 -427 2697 117 20 40 chr13 77050068 77050459 -42694439 - MER65A LTR ERV1 -8 437 55 2239 131 3 0 chr13 77050459 77050771 -42694127 - AluSq SINE Alu 0 313 1 2697 117 20 40 chr13 77050771 77050825 -42694073 - MER65A LTR ERV1 -390 55 1 1471 201 12 104 chr13 77050863 77051088 -42693810 + MLT1D LTR MaLR 113 282 -223 3039 118 25 5 chr13 77051088 77051530 -42693368 + L1PA15 LINE L1 5715 6165 0 1471 201 12 104 chr13 77051530 77051727 -42693171 + MLT1D LTR MaLR 282 496 -9 510 321 54 24 chr13 77051729 77051986 -42692912 + MIR SINE MIR 2 262 0 306 259 80 27 chr13 77052000 77052112 -42692786 - MIR SINE MIR -73 189 72 2017 121 14 14 chr13 77052662 77052980 -42691918 + AluSx SINE Alu 1 312 0 979 127 80 0 chr13 77052982 77053132 -42691766 + AluSg/x SINE Alu 145 306 -6 2024 250 124 39 chr13 77053563 77053638 -42691260 + HsTC2 DNA Tc2 2 69 -1829 2175 105 3 19 chr13 77053638 77053953 -42690945 - AluY SINE Alu -1 310 1 2024 250 124 39 chr13 77053953 77054101 -42690797 + HsTC2 DNA Tc2 69 203 -1695 1539 99 27 9 chr13 77054101 77054324 -42690574 + L1MA1 LINE L1 6076 6302 0 2024 250 124 39 chr13 77054324 77055029 -42689869 + HsTC2 DNA Tc2 203 1006 -892 * 2963 215 34 5 chr13 77055019 77055629 -42689269 + MER82 DNA MER2_type 24 651 -2 206 261 43 0 chr13 77055703 77055749 -42689149 + MER5A DNA MER1_type 65 112 -77 1203 319 51 4 chr13 77055861 77056391 -42688507 + ERVL LTR ERVL 2808 3353 -1900 403 326 7 37 chr13 77056862 77056997 -42687901 - L2 LINE L2 -3 3269 3139 195 184 0 0 chr13 77057367 77057405 -42687493 + (TA)n Simple_repeat Simple_repeat 1 38 0 228 114 45 0 chr13 77057408 77057452 -42687446 - L1MC4 LINE L1 -1339 6703 6658 264 292 0 0 chr13 77057487 77057583 -42687315 + (TA)n Simple_repeat Simple_repeat 1 96 0 2129 132 41 11 chr13 77057583 77057947 -42686951 + L1PB4 LINE L1 5782 6156 0 34 42 0 0 chr13 77057953 77058001 -42686897 + AT_rich Low_complexity Low_complexity 1 48 0 33 43 0 0 chr13 77058081 77058128 -42686770 + AT_rich Low_complexity Low_complexity 1 47 0 1687 161 7 33 chr13 77058148 77058452 -42686446 + AluJo SINE Alu 1 296 -16 432 211 141 28 chr13 77059091 77059233 -42685665 - MIR SINE MIR -6 256 99 1023 301 71 31 chr13 77059384 77059863 -42685035 - MLT1J LTR MaLR -1 510 13 199 304 76 22 chr13 77060656 77060748 -42684150 + L2 LINE L2 3160 3256 -16 22 70 0 0 chr13 77061280 77061323 -42683575 + AT_rich Low_complexity Low_complexity 1 43 0 230 276 0 0 chr13 77061439 77061497 -42683401 + (TA)n Simple_repeat Simple_repeat 2 59 0 348 302 120 27 chr13 77061613 77061838 -42683060 - L1ME LINE L1 -531 5635 5390 674 227 49 6 chr13 77061856 77062019 -42682879 - MLT1A1 LTR MaLR 0 365 196 237 273 116 70 chr13 77062324 77062566 -42682332 - L1ME LINE L1 -1785 4361 4109 200 154 96 0 chr13 77063089 77063141 -42681757 - MIR SINE MIR -34 228 172 730 269 122 35 chr13 77063180 77063778 -42681120 - HAL1 LINE L1 -965 1542 893 1169 287 97 26 chr13 77063860 77064502 -42680396 - HAL1 LINE L1 -1767 740 54 2351 243 72 45 chr13 77064689 77065554 -42679344 - L1MC4 LINE L1 0 8042 7155 288 286 107 29 chr13 77065579 77065785 -42679113 - L1M4 LINE L1 -1168 4978 4757 2503 177 65 48 chr13 77065839 77066382 -42678516 - MLT2B3 LTR ERVL 0 554 3 726 260 103 28 chr13 77066458 77066854 -42678044 - L1M4 LINE L1 -1526 4620 4195 2063 181 21 18 chr13 77066893 77067126 -42677772 - MER1B DNA MER1_type -2373 339 103 2030 144 85 15 chr13 77067126 77067466 -42677432 - THE1B LTR MaLR 0 364 1 2063 181 21 18 chr13 77067466 77067570 -42677328 - MER1B DNA MER1_type -2609 103 1 308 251 50 53 chr13 77067580 77067802 -42677096 - L1M4 LINE L1 -1988 4158 3866 34 24 0 0 chr13 77069012 77069053 -42675845 + AT_rich Low_complexity Low_complexity 1 41 0 650 124 23 31 chr13 77070003 77070132 -42674766 - L1MA8 LINE L1 -6 6285 6158 480 274 76 0 chr13 77070456 77070693 -42674205 - MER113 DNA MER1_type? -264 257 3 302 303 2 0 chr13 77070707 77070801 -42674097 + MIR SINE MIR 75 170 -38 275 300 56 44 chr13 77070808 77070988 -42673910 - MIR SINE MIR -2 260 79 440 108 15 0 chr13 77071003 77071068 -42673830 + MADE1 DNA Mariner 15 80 0 181 264 55 77 chr13 77071344 77071435 -42673463 + L2 LINE L2 3210 3298 -15 3969 176 33 12 chr13 77071947 77073571 -42671327 - L1MA7 LINE L1 -1 6290 4531 386 196 151 95 chr13 77073601 77073780 -42671118 - MIR SINE MIR 0 262 74 198 272 142 77 chr13 77075730 77075899 -42668999 + MIR SINE MIR 13 192 -70 5429 165 51 12 chr13 77075900 77077817 -42667081 - L1PA13 LINE L1 -26 6137 4151 328 301 52 58 chr13 77078052 77078225 -42666673 + MIR SINE MIR 35 206 -56 238 363 86 30 chr13 77078859 77079093 -42665805 + MIR SINE MIR 3 249 -13 1726 231 46 20 chr13 77079149 77079604 -42665294 - MLT1C LTR MaLR 0 467 1 2084 113 24 3 chr13 77079827 77080119 -42664779 + AluSg SINE Alu 1 298 -12 251 321 38 0 chr13 77080627 77080733 -42664165 + MIR SINE MIR 137 246 -16 455 195 42 8 chr13 77080929 77081047 -42663851 - L1MA9 LINE L1 0 6312 6191 214 250 139 19 chr13 77081501 77081609 -42663289 + MIR SINE MIR 49 169 -93 467 311 176 30 chr13 77082413 77083649 -42661249 - HAL1 LINE L1 0 2507 1092 513 195 0 71 chr13 77083871 77083984 -42660914 + AluJb SINE Alu 1 105 -207 392 261 0 0 chr13 77084230 77084322 -42660576 - MER91B DNA MER1_type -11 179 88 289 304 125 0 chr13 77084337 77084449 -42660449 - MER91B DNA MER1_type -61 129 4 1995 141 6 28 chr13 77085027 77085245 -42659653 + AluSx SINE Alu 1 211 -132 4878 92 6 1 chr13 77085245 77085898 -42659000 - PABL_A LTR ERV1 0 660 5 1995 141 6 28 chr13 77085898 77086029 -42658869 + AluSx SINE Alu 211 343 0 297 288 64 32 chr13 77086035 77086160 -42658738 - MIR SINE MIR -102 160 32 2042 116 3 20 chr13 77086489 77086790 -42658108 + AluSx SINE Alu 3 298 -14 257 220 51 17 chr13 77087146 77087205 -42657693 + L2 LINE L2 3249 3309 -4 743 203 28 0 chr13 77087602 77087745 -42657153 - MIR SINE MIR -81 181 35 1208 230 82 22 chr13 77088126 77088482 -42656416 + L1MCc LINE L1 51 427 -5996 2124 113 55 22 chr13 77088528 77088891 -42656007 - THE1C LTR MaLR 0 375 1 332 293 28 9 chr13 77089136 77089242 -42655656 + L1MCc LINE L1 657 764 -5659 1738 136 37 20 chr13 77089281 77089576 -42655322 + AluSx SINE Alu 1 300 -12 860 226 67 0 chr13 77090470 77090665 -42654233 - MIR SINE MIR -31 231 24 2036 118 50 68 chr13 77094631 77095013 -42649885 - THE1C LTR MaLR 0 375 1 215 209 0 0 chr13 77095051 77095094 -42649804 + (TG)n Simple_repeat Simple_repeat 2 44 0 924 237 23 27 chr13 77095649 77095911 -42648987 + MIR SINE MIR 1 261 -1 1706 191 0 0 chr13 77095998 77096286 -42648612 - AluJb SINE Alu -23 289 2 22 0 0 0 chr13 77096669 77096691 -42648207 + AT_rich Low_complexity Low_complexity 1 22 0 734 247 29 6 chr13 77097099 77097273 -42647625 + MER97a DNA MER1_type? 1 178 -716 231 300 89 0 chr13 77097431 77097521 -42647377 - HAL1b LINE L1 -558 790 693 22 35 0 0 chr13 77099168 77099197 -42645701 + AT_rich Low_complexity Low_complexity 1 29 0 1015 184 26 18 chr13 77100192 77100420 -42644478 - L1ME2 LINE L1 -169 5995 5766 488 287 23 0 chr13 77100410 77100584 -42644314 - L1M4 LINE L1 -1094 5288 5111 * 963 270 86 43 chr13 77100590 77101110 -42643788 - MLT1F LTR MaLR -12 530 1 1970 214 50 33 chr13 77101112 77101771 -42643127 - L1M4 LINE L1 -1298 5084 4283 228 294 72 20 chr13 77101754 77101907 -42642991 - L1M4 LINE L1 -5037 1347 1187 * 253 118 20 20 chr13 77101931 77101982 -42642916 - L1MEc LINE L1 -5285 1111 1061 * 416 280 19 19 chr13 77101962 77102119 -42642779 - L1MEc LINE L1 -6196 200 44 618 167 0 0 chr13 77102357 77102459 -42642439 + AluS SINE Alu 1 102 -211 209 281 56 56 chr13 77102609 77102698 -42642200 + MIR SINE MIR 42 130 -78 394 357 70 0 chr13 77102893 77103064 -42641834 - MIR SINE MIR 0 262 80 281 285 50 18 chr13 77103082 77103204 -42641694 + MIR3 SINE MIR 39 163 -45 389 347 27 36 chr13 77105043 77105265 -42639633 + L2 LINE L2 2288 2507 -807 617 246 110 78 chr13 77105880 77106226 -42638672 - MLT1J2 LTR MaLR -55 395 39 1036 165 28 125 chr13 77106302 77106676 -42638222 + MER4C LTR ERV1 1 241 -224 2008 146 43 30 chr13 77106676 77107046 -42637852 - THE1C LTR MaLR 0 375 1 1036 165 28 125 chr13 77107046 77107249 -42637649 + MER4C LTR ERV1 241 462 -3 451 233 110 55 chr13 77107591 77107754 -42637144 + MIR SINE MIR 11 182 -80 256 231 0 0 chr13 77109145 77109197 -42635701 - L2 LINE L2 -4 3309 3258 578 190 37 68 chr13 77109251 77109414 -42635484 + MLT2F LTR ERVL 371 528 -135 395 335 88 22 chr13 77109512 77109784 -42635114 - L2 LINE L2 -210 3103 2814 318 239 17 51 chr13 77109816 77109853 -42635045 - L2 LINE L2 -741 2573 2536 7036 123 38 30 chr13 77109853 77110473 -42634425 + Tigger3b DNA MER2_type 1 615 -2413 1876 168 13 10 chr13 77110473 77110783 -42634115 + AluJb SINE Alu 1 311 -1 7036 123 38 30 chr13 77110783 77111384 -42633514 + Tigger3b DNA MER2_type 615 1231 0 318 239 17 51 chr13 77111384 77111463 -42633435 - L2 LINE L2 -778 2536 2461 293 307 47 55 chr13 77111653 77111780 -42633118 + L2 LINE L2 3137 3262 -10 2169 75 17 3 chr13 77111802 77112096 -42632802 + AluY SINE Alu 1 298 -13 183 290 175 60 chr13 77113043 77113260 -42631638 - MIR SINE MIR -1 261 20 190 305 85 0 chr13 77113718 77113800 -42631098 + MIR SINE MIR 54 142 -66 22 0 0 0 chr13 77115913 77115935 -42628963 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr13 77116689 77116731 -42628167 + (CA)n Simple_repeat Simple_repeat 2 43 0 223 318 68 40 chr13 77116908 77117056 -42627842 + MER5B DNA MER1_type 26 177 -1 536 294 81 36 chr13 77117971 77118192 -42626706 + MIR SINE MIR 13 243 -19 593 282 84 1 chr13 77119069 77119291 -42625607 + MIR SINE MIR 23 262 0 27 62 0 0 chr13 77119376 77119424 -42625474 + AT_rich Low_complexity Low_complexity 1 48 0 338 324 88 7 chr13 77119518 77119654 -42625244 - MIR3 SINE MIR -53 155 9 195 303 119 18 chr13 77120317 77120426 -42624472 + MIR SINE MIR 66 185 -77 1709 136 15 36 chr13 77121126 77121458 -42623440 + L1MA7 LINE L1 5967 6291 0 643 224 140 33 chr13 77121485 77121699 -42623199 - MIR SINE MIR -25 237 1 1783 159 10 16 chr13 77121940 77122254 -42622644 + AluJb SINE Alu 1 312 0 22 0 0 0 chr13 77122286 77122308 -42622590 + AT_rich Low_complexity Low_complexity 1 22 0 1575 264 117 6 chr13 77122610 77123121 -42621777 + MER69 DNA AcHobo 1 568 -658 830 218 229 7 chr13 77123119 77123542 -42621356 + MER69 DNA AcHobo 2010 2526 0 * 722 242 139 87 chr13 77123560 77123711 -42621187 + L2 LINE L2 2926 3068 -245 4389 145 34 0 chr13 77123711 77124469 -42620429 + L1MA3 LINE L1 5522 6305 0 722 242 139 87 chr13 77124469 77124685 -42620213 + L2 LINE L2 3068 3312 -1 399 41 0 0 chr13 77124773 77124822 -42620076 + (GA)n Simple_repeat Simple_repeat 2 50 0 463 281 35 59 chr13 77125760 77125963 -42618935 - MIR SINE MIR -2 260 63 1973 247 161 44 chr13 77126653 77127065 -42617833 - Charlie7 DNA MER1_type -274 2338 1975 2229 92 0 0 chr13 77127065 77127357 -42617541 - AluSc SINE Alu -17 292 1 1973 247 161 44 chr13 77127357 77128407 -42616491 - Charlie7 DNA MER1_type -637 1975 706 598 274 49 23 chr13 77128422 77128685 -42616213 - Charlie7 DNA MER1_type -2302 310 41 538 213 49 0 chr13 77128968 77129090 -42615808 + MLT1D LTR MaLR 1 128 -377 2399 67 10 0 chr13 77129323 77129620 -42615278 + AluY SINE Alu 1 300 -11 2347 82 10 3 chr13 77131467 77131770 -42613128 - AluSg SINE Alu -4 306 2 1948 167 15 0 chr13 77132102 77132432 -42612466 - MER1B DNA MER1_type 0 337 3 217 298 18 79 chr13 77132887 77133001 -42611897 - L3 LINE CR1 -884 693 587 490 302 107 0 chr13 77133763 77133912 -42610986 + AluJo SINE Alu 122 286 -26 2374 273 124 17 chr13 77134628 77135882 -42609016 + L2 LINE L2 1920 3304 -9 550 315 69 39 chr13 77136295 77136657 -42608241 + L1ME4a LINE L1 5496 5868 -253 382 226 39 0 chr13 77137191 77137293 -42607605 + L1MA10 LINE L1 6218 6323 -11 1793 193 19 8 chr13 77143114 77143476 -42601422 - MER47A DNA MER2_type 0 366 1 1467 140 12 8 chr13 77143562 77143812 -42601086 - L1PA15 LINE L1 -3 6162 5912 217 319 0 0 chr13 77144663 77144735 -42600163 + (TA)n Simple_repeat Simple_repeat 2 73 0 348 267 54 28 chr13 77144869 77145149 -42599749 + MLT1F LTR MaLR 21 352 -243 388 188 62 10 chr13 77145248 77145344 -42599554 + MER58C DNA MER1_type 114 214 -1 994 132 0 13 chr13 77145930 77146082 -42598816 - AluSg/x SINE Alu -11 301 152 186 43 0 0 chr13 77146558 77146581 -42598317 + (A)n Simple_repeat Simple_repeat 1 23 0 2629 102 2 2 chr13 77147046 77147447 -42597451 + L1P5 LINE L1 5391 5791 -360 3568 86 16 4 chr13 77147447 77147592 -42597306 + L1PB1 LINE L1 5636 5778 -373 372 22 0 0 chr13 77147592 77147637 -42597261 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 3568 86 16 4 chr13 77147637 77148001 -42596897 + L1PB1 LINE L1 5778 6151 0 2456 71 3 0 chr13 77149021 77149317 -42595581 - AluSg SINE Alu -12 298 2 1948 167 15 0 chr13 77149649 77149979 -42594919 - MER1B DNA MER1_type 0 337 3 217 298 18 79 chr13 77150434 77150548 -42594350 - L3 LINE CR1 -884 693 587 490 302 107 0 chr13 77151310 77151459 -42593439 + AluJo SINE Alu 122 286 -26 1758 74 5 0 chr13 77152799 77153015 -42591883 - AluSg/x SINE Alu -12 298 82 227 65 0 0 chr13 77153016 77153047 -42591851 - Alu SINE Alu -268 31 1 236 187 209 44 chr13 77153793 77153884 -42591014 + MER102b DNA MER1_type 194 299 -42 2233 125 3 0 chr13 77155139 77155450 -42589448 + AluSx SINE Alu 1 312 0 244 153 83 0 chr13 77155473 77155545 -42589353 + (TA)n Simple_repeat Simple_repeat 2 79 0 525 264 264 28 chr13 77156356 77156791 -42588107 + MLT1H LTR MaLR 12 549 0 911 297 145 19 chr13 77157193 77157812 -42587086 - L2 LINE L2 -3 3310 2614 22 0 0 0 chr13 77160661 77160683 -42584215 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr13 77161371 77161392 -42583506 + (T)n Simple_repeat Simple_repeat 1 21 0 28 0 0 0 chr13 77163890 77163918 -42580980 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr13 77166106 77166148 -42578750 + AT_rich Low_complexity Low_complexity 1 42 0 237 285 124 22 chr13 77167261 77167398 -42577500 + MER20B DNA MER1_type 1 151 -632 1705 181 103 38 chr13 77167958 77168384 -42576514 + MSTB2 LTR MaLR 1 454 -3 295 389 8 8 chr13 77168952 77169083 -42575815 + L3b LINE CR1 1209 1339 -244 337 261 42 143 chr13 77170766 77171199 -42573699 + L2 LINE L2 2340 2728 -586 363 260 82 41 chr13 77171513 77171659 -42573239 + MIR SINE MIR 89 240 -22 626 240 49 93 chr13 77173000 77173246 -42571652 + MIR SINE MIR 6 240 -22 1884 166 0 3 chr13 77173505 77173794 -42571104 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr13 77173796 77173822 -42571076 + AT_rich Low_complexity Low_complexity 1 26 0 432 211 106 31 chr13 77174733 77174894 -42570004 + L1ME4a LINE L1 5949 6121 0 25 31 0 0 chr13 77176347 77176379 -42568519 + AT_rich Low_complexity Low_complexity 1 32 0 352 297 114 27 chr13 77176777 77177002 -42567896 - L1MC4a LINE L1 -596 5574 5563 404 61 37 12 chr13 77177002 77177084 -42567814 + (TA)n Simple_repeat Simple_repeat 1 84 0 352 297 114 27 chr13 77177084 77177226 -42567672 - L1MC4a LINE L1 -607 5563 5435 290 192 39 26 chr13 77177853 77177931 -42566967 - MER116 DNA Mariner -1 79 1 2256 96 0 17 chr13 77178833 77179134 -42565764 - AluSg SINE Alu -13 297 2 343 298 46 84 chr13 77180887 77181149 -42563749 - L2 LINE L2 -2 3270 3019 287 65 22 0 chr13 77182930 77182976 -42561922 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1130 224 114 101 chr13 77184256 77185306 -42559592 + L2 LINE L2 2254 3311 -2 219 271 43 0 chr13 77186703 77186773 -42558125 - MIR SINE MIR -1 261 189 832 179 15 46 chr13 77187611 77187806 -42557092 - MER20 DNA MER1_type -1 218 30 875 150 0 0 chr13 77188510 77188643 -42556255 + FLAM_C SINE Alu 1 133 0 186 133 0 0 chr13 77188647 77188677 -42556221 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 2190 102 0 0 chr13 77189743 77190026 -42554872 + AluSx SINE Alu 21 303 -9 24 32 0 0 chr13 77190454 77190485 -42554413 + AT_rich Low_complexity Low_complexity 1 31 0 2051 113 3 0 chr13 77192702 77193016 -42551882 - AluSx SINE Alu 0 315 1 249 323 0 0 chr13 77196062 77196124 -42548774 + L3 LINE CR1 1487 1548 -29 256 102 41 0 chr13 77197856 77197905 -42546993 + GA-rich Low_complexity Low_complexity 2 52 0 434 263 88 30 chr13 77200296 77200558 -42544340 + L1MC4 LINE L1 7735 8011 -31 2007 108 73 0 chr13 77201480 77201766 -42543132 - AluSp SINE Alu -6 307 1 274 246 131 33 chr13 77202214 77202336 -42542562 - MIR SINE MIR -6 256 123 214 175 0 25 chr13 77203015 77203055 -42541843 + GA-rich Low_complexity Low_complexity 6 44 0 1465 115 31 0 chr13 77203872 77204098 -42540800 - L1PA10 LINE L1 -5 6163 5931 1108 83 0 0 chr13 77204098 77204242 -42540656 + L1PA10 LINE L1 5795 5938 -236 260 321 171 5 chr13 77205095 77205288 -42539610 + L3 LINE CR1 1331 1555 -22 2169 249 50 19 chr13 77205563 77206186 -42538712 + L1ME3A LINE L1 5523 6164 -6 2266 104 0 0 chr13 77206279 77206586 -42538312 + AluSq SINE Alu 1 307 -6 196 250 56 28 chr13 77207451 77207523 -42537375 + MIR SINE MIR 77 150 -112 1668 211 3 3 chr13 77207587 77207885 -42537013 + AluJo SINE Alu 1 298 -14 380 263 203 14 chr13 77208106 77208323 -42536575 + L2 LINE L2 3053 3310 -3 650 81 11 0 chr13 77208784 77208871 -42536027 + AluY SINE Alu 206 293 -18 454 244 85 24 chr13 77209372 77209536 -42535362 + MIR SINE MIR 15 188 -74 1811 73 30 4 chr13 77211381 77211614 -42533284 - AluSq SINE Alu -9 304 66 802 281 49 56 chr13 77212963 77213170 -42531728 - L2 LINE L2 -945 2369 2163 2470 60 0 35 chr13 77213170 77213485 -42531413 + AluY SINE Alu 1 304 -7 802 281 49 56 chr13 77213485 77213601 -42531297 - L2 LINE L2 -1151 2163 2048 309 271 213 0 chr13 77214380 77214535 -42530363 - MIR SINE MIR -2 260 73 1014 175 4 68 chr13 77215622 77215856 -42529042 - MER20 DNA MER1_type 0 219 1 1809 154 3 10 chr13 77216232 77216524 -42528374 + AluSx SINE Alu 1 290 -22 304 288 110 37 chr13 77216823 77216847 -42528051 - MIR SINE MIR -3 259 238 1879 168 100 54 chr13 77216847 77217329 -42527569 + MLT1D LTR MaLR 2 505 0 304 288 110 37 chr13 77217329 77217467 -42527431 - MIR SINE MIR -24 238 85 7747 21 1 0 chr13 77217696 77218764 -42526134 + L1PA3 LINE L1 5123 6191 0 5600 147 33 27 chr13 77218978 77220043 -42524855 + MER11C LTR ERVK 1 1071 0 344 263 0 25 chr13 77220964 77221044 -42523854 + MER5A DNA MER1_type 112 189 0 2400 66 0 0 chr13 77221323 77221633 -42523265 + AluY SINE Alu 1 310 0 2571 55 0 0 chr13 77221910 77222220 -42522678 + AluY SINE Alu 1 310 -1 317 319 35 7 chr13 77222784 77222928 -42521970 + MIR3 SINE MIR 54 201 -7 706 63 0 36 chr13 77223649 77223760 -42521138 + (TA)n Simple_repeat Simple_repeat 1 107 0 2851 139 48 27 chr13 77223768 77224649 -42520249 - L1P5 LINE L1 -381 5775 4887 255 250 39 67 chr13 77224786 77224890 -42520008 + L2 LINE L2 3040 3140 -173 863 227 69 30 chr13 77224915 77225359 -42519539 + L1ME1 LINE L1 5061 5520 -642 1129 215 159 10 chr13 77225360 77225769 -42519129 + L1ME1 LINE L1 5692 6161 -5 183 42 0 0 chr13 77225904 77225928 -42518970 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 427 246 268 0 chr13 77226888 77227026 -42517872 + MER5A DNA MER1_type 14 188 -1 354 335 108 0 chr13 77227234 77227419 -42517479 + MIR SINE MIR 20 224 -38 23 54 0 0 chr13 77228047 77228084 -42516814 + AT_rich Low_complexity Low_complexity 1 37 0 374 223 58 39 chr13 77231724 77231827 -42513071 - MIR SINE MIR 0 262 158 234 340 75 21 chr13 77231855 77231949 -42512949 + L2 LINE L2 3160 3258 -14 268 255 64 43 chr13 77231984 77232078 -42512820 - MIR SINE MIR -146 116 21 24 0 0 0 chr13 77232618 77232642 -42512256 + AT_rich Low_complexity Low_complexity 1 24 0 220 345 168 8 chr13 77233271 77233390 -42511508 + L2 LINE L2 3129 3266 -6 180 0 0 0 chr13 77233598 77233618 -42511280 + (A)n Simple_repeat Simple_repeat 1 20 0 1015 211 48 0 chr13 77236526 77236734 -42508164 - MER20 DNA MER1_type -1 218 1 23 0 0 0 chr13 77238053 77238076 -42506822 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 77238441 77238462 -42506436 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 77238774 77238795 -42506103 + AT_rich Low_complexity Low_complexity 1 21 0 1871 142 59 56 chr13 77240561 77240935 -42503963 + THE1C LTR MaLR 1 375 0 28 0 0 0 chr13 77241529 77241557 -42503341 + AT_rich Low_complexity Low_complexity 1 28 0 307 291 39 10 chr13 77241712 77241815 -42503083 + MIR SINE MIR 47 152 -56 474 18 0 0 chr13 77242010 77242065 -42502833 + (CA)n Simple_repeat Simple_repeat 2 56 0 2004 238 92 12 chr13 77242414 77242914 -42501984 - MLT1F LTR MaLR -2 540 1 548 286 29 128 chr13 77242915 77243667 -42501231 - MLT1F-int LTR MaLR -1 1370 693 359 285 49 0 chr13 77243850 77243994 -42500904 - MLT1F-int LTR MaLR -765 606 456 272 242 16 0 chr13 77244064 77244126 -42500772 - MLT1F LTR MaLR -479 63 1 1608 192 127 45 chr13 77245340 77245830 -42499068 + L1MB5 LINE L1 5636 6165 -9 588 138 0 0 chr13 77245842 77245936 -42498962 - L1PB3 LINE L1 0 6154 6061 2706 99 5 0 chr13 77245993 77246366 -42498532 - THE1C LTR MaLR 0 375 1 4455 167 47 2 chr13 77246367 77247404 -42497494 + L1PB4 LINE L1 5073 6146 -10 2214 107 10 7 chr13 77247422 77247732 -42497166 + AluSx SINE Alu 1 311 -1 2433 97 0 0 chr13 77248395 77248705 -42496193 + AluY SINE Alu 1 310 -1 450 192 30 0 chr13 77249044 77249143 -42495755 + MER5A DNA MER1_type 11 112 -77 1879 145 6 31 chr13 77249159 77249477 -42495421 + AluJo SINE Alu 3 312 0 1614 146 28 11 chr13 77250768 77251055 -42493843 + AluJo SINE Alu 20 311 -1 301 269 65 65 chr13 77251068 77251269 -42493629 - L3 LINE CR1 -216 1361 1161 882 264 43 17 chr13 77251310 77251545 -42493353 - MIR SINE MIR -6 256 16 1329 186 4 15 chr13 77251547 77251811 -42493087 - MLT1D LTR MaLR 0 505 245 610 199 27 86 chr13 77251942 77252163 -42492735 - MLT1D LTR MaLR -297 208 1 535 343 89 39 chr13 77252669 77253083 -42491815 - L3 LINE CR1 -707 870 436 27 29 0 0 chr13 77253114 77253148 -42491750 + AT_rich Low_complexity Low_complexity 1 34 0 284 258 123 26 chr13 77253218 77253373 -42491525 - Charlie8 DNA MER1_type -2211 206 37 220 351 90 0 chr13 77253441 77253552 -42491346 - L3 LINE CR1 -1221 356 236 291 298 69 0 chr13 77253707 77253838 -42491060 + L2 LINE L2 2479 2618 -696 1232 215 110 58 chr13 77253846 77254329 -42490569 - MLT2B1 LTR ERVL -12 508 1 540 140 37 0 chr13 77254416 77254523 -42490375 - L1MB8 LINE L1 -1 6177 6067 182 315 119 41 chr13 77254653 77254872 -42490026 + L2 LINE L2 2926 3161 -152 415 252 17 0 chr13 77255022 77255156 -42489742 + L2 LINE L2 3186 3298 -15 7191 142 22 5 chr13 77256019 77258426 -42486472 - L1PA13 LINE L1 -33 6130 3687 893 178 7 7 chr13 77259401 77259547 -42485351 - FRAM SINE Alu -30 146 1 1116 180 63 0 chr13 77260733 77260939 -42483959 + MER20 DNA MER1_type 1 219 0 294 171 0 171 chr13 77261945 77262056 -42482842 + L1MD2 LINE L1 6256 6347 -12 23 24 0 24 chr13 77262056 77262074 -42482824 + AT_rich Low_complexity Low_complexity 1 18 -22 2748 23 0 0 chr13 77262074 77262384 -42482514 - AluY SINE Alu -1 310 1 23 24 0 24 chr13 77262384 77262406 -42482492 + AT_rich Low_complexity Low_complexity 18 40 0 1347 178 27 57 chr13 77262478 77262872 -42482026 - MLT1C LTR MaLR -36 354 1 259 250 59 0 chr13 77262931 77262999 -42481899 - L2 LINE L2 0 3272 3201 339 255 52 46 chr13 77263204 77263357 -42481541 + L2 LINE L2 3159 3312 -1 27 73 0 0 chr13 77263993 77264048 -42480850 + AT_rich Low_complexity Low_complexity 1 55 0 1762 122 0 54 chr13 77264088 77264382 -42480516 + AluSc SINE Alu 7 284 -25 264 59 0 0 chr13 77264704 77264738 -42480160 + (CA)n Simple_repeat Simple_repeat 2 35 0 2251 95 3 0 chr13 77264742 77265037 -42479861 - AluY SINE Alu -15 296 1 30 27 0 0 chr13 77265161 77265198 -42479700 + AT_rich Low_complexity Low_complexity 1 37 0 214 346 85 0 chr13 77265654 77265784 -42479114 - MIR3 SINE MIR -4 204 64 42526 36 1 2 chr13 77266077 77272230 -42472668 + L1PA3 LINE L1 3 6155 0 216 0 0 0 chr13 77272540 77272564 -42472334 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1878 189 14 14 chr13 77275695 77276060 -42468838 + MLT1A1 LTR MaLR 1 365 0 5568 121 42 14 chr13 77276670 77278005 -42466893 - L1PB1 LINE L1 0 6151 4784 1672 68 12 28 chr13 77278038 77278289 -42466609 + L1PB1 LINE L1 5657 5903 -248 195 308 0 46 chr13 77278470 77278535 -42466363 + L2 LINE L2 3243 3304 -9 26 30 0 0 chr13 77278818 77278851 -42466047 + AT_rich Low_complexity Low_complexity 1 33 0 6199 145 18 19 chr13 77279322 77280054 -42464844 + L1MC1 LINE L1 4954 5685 -648 2041 151 122 8 chr13 77280054 77280438 -42464460 - MSTA LTR MaLR 0 428 1 6199 145 18 19 chr13 77280438 77280575 -42464323 + L1MC1 LINE L1 5685 5821 -512 2456 77 0 3 chr13 77280575 77280874 -42464024 + AluSx SINE Alu 1 298 -14 6199 145 18 19 chr13 77280874 77281365 -42463533 + L1MC1 LINE L1 5821 6310 -23 37 62 0 0 chr13 77282252 77282317 -42462581 + AT_rich Low_complexity Low_complexity 1 65 0 2584 51 0 16 chr13 77282457 77282773 -42462125 - AluY SINE Alu 0 311 1 28 0 0 0 chr13 77283130 77283158 -42461740 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 77284224 77284245 -42460653 + AT_rich Low_complexity Low_complexity 1 21 0 226 297 0 10 chr13 77284579 77284680 -42460218 - MARNA DNA Mariner -206 380 281 369 186 0 0 chr13 77285294 77285364 -42459534 - MER116 DNA Mariner 0 80 11 283 272 16 152 chr13 77285524 77285715 -42459183 - MIR SINE MIR -85 177 13 24 0 0 0 chr13 77286368 77286392 -42458506 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 77286971 77286994 -42457904 + AT_rich Low_complexity Low_complexity 1 23 0 1650 71 40 8 chr13 77288096 77288349 -42456549 + L1P LINE L1 1 261 -5885 16265 28 0 2 chr13 77288349 77291056 -42453842 + L1PA4 LINE L1 3446 6152 -3 471 280 70 33 chr13 77291527 77291741 -42453157 + MIR SINE MIR 7 228 -34 24 0 0 0 chr13 77292173 77292197 -42452701 + AT_rich Low_complexity Low_complexity 1 24 0 396 306 102 17 chr13 77292225 77292519 -42452379 + L1ME LINE L1 5481 5799 -322 39 0 0 0 chr13 77292773 77292812 -42452086 + AT_rich Low_complexity Low_complexity 1 39 0 855 270 62 0 chr13 77293716 77293942 -42450956 + MIR SINE MIR 23 262 0 234 0 0 0 chr13 77296202 77296228 -42448670 + (CA)n Simple_repeat Simple_repeat 1 26 0 313 244 51 13 chr13 77296376 77296454 -42448444 - MIR SINE MIR -77 185 105 258 263 0 53 chr13 77297123 77297199 -42447699 - L2 LINE L2 0 3272 3201 854 164 93 0 chr13 77298813 77298996 -42445902 + L1MB7 LINE L1 5631 5830 -348 2396 183 27 2 chr13 77299007 77299447 -42445451 + MER44D DNA MER2_type 17 467 -238 5377 127 31 16 chr13 77299447 77300507 -42444391 + MER11B LTR ERVK 1 1066 -5 1341 173 21 12 chr13 77300529 77300772 -42444126 + MER44D DNA MER2_type 469 585 -20 1643 167 68 3 chr13 77300809 77301145 -42443753 + L1MB7 LINE L1 5827 6184 0 35 54 0 14 chr13 77301324 77301354 -42443544 + AT_rich Low_complexity Low_complexity 1 30 -43 1510 185 51 11 chr13 77301354 77301630 -42443268 + AluJo SINE Alu 1 287 -25 35 54 0 14 chr13 77301630 77301673 -42443225 + AT_rich Low_complexity Low_complexity 30 73 0 2477 92 19 32 chr13 77302322 77302691 -42442207 + THE1B LTR MaLR 1 364 0 249 278 105 11 chr13 77302960 77303151 -42441747 + MER102a DNA MER1_type 116 324 -6 248 371 10 10 chr13 77303225 77303356 -42441542 - MER5B DNA MER1_type -8 181 51 2125 104 0 0 chr13 77303557 77303868 -42441030 - AluSg SINE Alu 0 311 1 2101 86 54 4 chr13 77304298 77304577 -42440321 + AluSc SINE Alu 1 293 -16 1119 157 74 19 chr13 77307341 77307557 -42437341 + AluJo SINE Alu 85 312 0 340 333 209 18 chr13 77307985 77308430 -42436468 - L2 LINE L2 -2560 754 225 185 180 20 0 chr13 77308905 77308955 -42435943 + (TA)n Simple_repeat Simple_repeat 2 52 0 555 292 62 24 chr13 77309189 77309398 -42435500 + MER58A DNA MER1_type 2 218 -6 630 192 0 8 chr13 77309728 77309848 -42435050 + FLAM_A SINE Alu 20 138 -4 1930 169 40 25 chr13 77309962 77310502 -42434396 - MLT2A2 LTR ERVL 0 554 1 2732 91 3 3 chr13 77311738 77312102 -42432796 - THE1B LTR MaLR 0 364 1 1558 185 54 17 chr13 77312861 77313212 -42431686 + MLT1A1 LTR MaLR 1 364 -1 21 0 0 0 chr13 77313395 77313416 -42431482 + AT_rich Low_complexity Low_complexity 1 21 0 1733 139 121 27 chr13 77313450 77313781 -42431117 + THE1B LTR MaLR 1 362 -2 1661 137 76 14 chr13 77313781 77314058 -42430840 + AluJo SINE Alu 18 311 -1 204 77 0 0 chr13 77315089 77315115 -42429783 + (TG)n Simple_repeat Simple_repeat 1 26 0 270 250 0 0 chr13 77315115 77315187 -42429711 + (TA)n Simple_repeat Simple_repeat 1 72 0 202 292 46 15 chr13 77315195 77315260 -42429638 + MIR SINE MIR 23 89 -173 22 0 0 0 chr13 77315373 77315395 -42429503 + AT_rich Low_complexity Low_complexity 1 22 0 2076 88 7 43 chr13 77315398 77315703 -42429195 + AluSp SINE Alu 1 294 -19 3758 91 47 20 chr13 77315749 77316343 -42428555 + MER4B LTR ERV1 1 610 0 868 216 18 35 chr13 77316478 77316761 -42428137 + L1ME1 LINE L1 4912 5189 -957 871 118 16 0 chr13 77316761 77316888 -42428010 + AluSg/x SINE Alu 178 306 -6 514 198 185 6 chr13 77316896 77317058 -42427840 + L1ME1 LINE L1 5213 5403 -743 616 204 29 68 chr13 77317324 77317530 -42427368 + LTR52 LTR ERVL 24 221 -200 2254 198 76 56 chr13 77317687 77318193 -42426705 + L1ME1 LINE L1 5391 5918 -248 429 109 0 0 chr13 77318193 77318257 -42426641 + (TA)n Simple_repeat Simple_repeat 2 65 0 2254 198 76 56 chr13 77318257 77318503 -42426395 + L1ME1 LINE L1 5918 6158 -8 197 314 14 14 chr13 77318511 77318581 -42426317 + L3 LINE CR1 939 1008 -569 2408 108 41 0 chr13 77318613 77319098 -42425800 + L1PA10 LINE L1 4986 5487 -681 1964 81 11 0 chr13 77319098 77319369 -42425529 + L1PA7 LINE L1 5880 6154 0 4969 78 30 0 chr13 77319369 77320036 -42424862 + L1PA10 LINE L1 5476 6165 -3 1685 174 4 4 chr13 77320063 77320328 -42424570 + AluJb SINE Alu 2 266 -46 342 318 39 16 chr13 77320329 77320458 -42424440 - MER5A DNA MER1_type -32 157 26 6974 28 5 0 chr13 77321473 77322300 -42422598 + L1PA4 LINE L1 5324 6154 -1 255 260 31 62 chr13 77322449 77322545 -42422353 + L2 LINE L2 3221 3313 0 267 271 0 0 chr13 77323792 77323851 -42421047 - L2 LINE L2 0 3272 3214 261 0 0 0 chr13 77324025 77324054 -42420844 + (TG)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr13 77324460 77324491 -42420407 + AT_rich Low_complexity Low_complexity 1 31 0 2244 120 10 0 chr13 77324569 77324877 -42420021 + AluSx SINE Alu 1 311 -1 233 280 11 21 chr13 77326372 77326465 -42418433 - MLT1L LTR MaLR -185 430 339 294 324 59 42 chr13 77327318 77327461 -42417437 + L1MC4a LINE L1 5665 5815 -1993 1936 83 4 0 chr13 77327461 77327702 -42417196 + AluSp SINE Alu 60 301 -12 294 324 59 42 chr13 77327702 77327796 -42417102 + L1MC4a LINE L1 5815 5906 -1902 462 214 0 0 chr13 77327827 77327916 -42416982 - MER2 DNA MER2_type -256 89 1 6476 140 58 17 chr13 77328424 77329606 -42415292 + Tigger3b DNA MER2_type 2 1231 0 221 381 91 24 chr13 77330804 77331135 -42413763 + L2 LINE L2 2044 2396 -918 2457 245 62 43 chr13 77331192 77331706 -42413192 + L1ME LINE L1 6 509 -5571 2157 136 3 0 chr13 77331706 77332016 -42412882 - AluSx SINE Alu -1 311 1 2457 245 62 43 chr13 77332016 77332890 -42412008 + L1ME LINE L1 509 1420 -4660 252 329 198 13 chr13 77332916 77333214 -42411684 + L2 LINE L2 2437 2789 -525 461 218 10 0 chr13 77333220 77333321 -42411577 - Charlie1 DNA MER1_type -6 2755 2654 650 82 148 16 chr13 77333623 77333745 -42411153 + MER85 DNA T2_type 2 139 0 2303 98 0 0 chr13 77334116 77334411 -42410487 + AluSq SINE Alu 1 295 -18 23 33 0 0 chr13 77334528 77334558 -42410340 + AT_rich Low_complexity Low_complexity 1 30 0 5330 101 13 55 chr13 77335177 77336100 -42408798 + L1MA2 LINE L1 5421 6304 0 2481 74 0 0 chr13 77336213 77336522 -42408376 + AluY SINE Alu 1 309 -2 23 0 0 0 chr13 77336595 77336618 -42408280 + AT_rich Low_complexity Low_complexity 1 23 0 209 326 168 15 chr13 77336884 77337050 -42407848 + MIR SINE MIR 30 212 -50 1855 176 0 0 chr13 77337325 77337621 -42407277 + AluJb SINE Alu 2 297 -15 350 248 99 0 chr13 77338455 77338556 -42406342 - MIR SINE MIR -70 192 82 182 361 105 45 chr13 77338655 77338788 -42406110 - L2 LINE L2 -5 3267 3127 21 0 0 0 chr13 77339594 77339615 -42405283 + AT_rich Low_complexity Low_complexity 1 21 0 393 280 42 35 chr13 77339688 77339831 -42405067 + L2 LINE L2 3166 3309 -4 282 284 146 56 chr13 77340197 77340216 -42404682 + L1M4 LINE L1 3805 3821 -2325 2842 48 6 14 chr13 77340216 77340574 -42404324 + THE1A LTR MaLR 1 355 0 282 284 146 56 chr13 77340574 77341054 -42403844 + L1M4 LINE L1 3821 4257 -1889 2333 82 0 20 chr13 77341054 77341358 -42403540 + AluY SINE Alu 1 298 -13 282 284 146 56 chr13 77341358 77342016 -42402882 + L1M4 LINE L1 4257 5067 -1079 317 323 69 11 chr13 77342067 77342256 -42402642 + L1M4 LINE L1 5148 5347 -799 1699 178 56 32 chr13 77342613 77343045 -42401853 - MLT1C LTR MaLR -10 457 16 477 0 0 0 chr13 77344252 77344305 -42400593 + (TA)n Simple_repeat Simple_repeat 2 54 0 308 345 42 6 chr13 77344602 77344767 -42400131 + HAL1 LINE L1 1497 1667 -840 2348 93 3 3 chr13 77344772 77345085 -42399813 + AluSq SINE Alu 1 313 0 320 312 92 6 chr13 77345409 77345582 -42399316 + LTR33 LTR ERVL 28 215 -306 21 0 0 0 chr13 77346342 77346363 -42398535 + AT_rich Low_complexity Low_complexity 1 21 0 182 314 186 0 chr13 77346593 77346695 -42398203 + MIR SINE MIR 18 138 -70 396 0 0 0 chr13 77347284 77347328 -42397570 + (CA)n Simple_repeat Simple_repeat 2 45 0 348 271 116 80 chr13 77347331 77347693 -42397205 + HAL1 LINE L1 2 376 -2131 * 450 236 56 23 chr13 77347682 77347898 -42397000 + HAL1 LINE L1 833 1055 -1452 225 229 95 19 chr13 77347927 77348032 -42396866 + MLT1J LTR MaLR 41 153 -358 2153 112 0 56 chr13 77348315 77348638 -42396260 + AluSx SINE Alu 1 305 -7 2413 96 0 0 chr13 77349515 77349817 -42395081 + AluSc SINE Alu 1 302 -7 740 136 119 0 chr13 77349820 77349938 -42394960 + AluJb SINE Alu 1 132 -180 225 268 186 31 chr13 77351101 77351198 -42393700 - L2 LINE L2 -1254 2060 1949 374 278 43 29 chr13 77351482 77351637 -42393261 + MIR SINE MIR 13 169 -39 1721 169 29 16 chr13 77351695 77352003 -42392895 + AluJo SINE Alu 1 312 0 1699 289 178 41 chr13 77352730 77352848 -42392050 - L2 LINE L2 -16 3297 3197 198 71 0 0 chr13 77352848 77352876 -42392022 + (CA)n Simple_repeat Simple_repeat 2 29 0 1699 289 178 41 chr13 77352876 77353058 -42391840 - L2 LINE L2 -116 3197 3041 2343 100 0 10 chr13 77353058 77353367 -42391531 + AluSp SINE Alu 1 306 -7 1699 289 178 41 chr13 77353367 77354238 -42390660 - L2 LINE L2 -272 3041 1956 610 128 12 0 chr13 77354395 77354514 -42390384 - FRAM SINE Alu 0 181 62 1872 160 0 10 chr13 77355011 77355311 -42389587 + AluJo SINE Alu 1 297 -15 276 214 151 48 chr13 77355542 77355668 -42389230 + MIR SINE MIR 2 140 -122 469 263 88 46 chr13 77355780 77355997 -42388901 - L3 LINE CR1 -106 1471 1246 206 157 314 0 chr13 77356456 77356526 -42388372 - L2 LINE L2 0 3313 3222 249 323 148 9 chr13 77357067 77357290 -42387608 + L1ME LINE L1 5386 5639 -482 204 40 0 0 chr13 77357311 77357336 -42387562 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1488 226 7 0 chr13 77357341 77357620 -42387278 - AluJb SINE Alu -31 281 1 1868 138 26 45 chr13 77357982 77358293 -42386605 + AluSx SINE Alu 1 305 -7 479 232 63 59 chr13 77358358 77358566 -42386332 + L1ME2 LINE L1 5950 6160 -6 253 271 87 105 chr13 77358703 77358969 -42385929 + L2 LINE L2 3012 3272 0 240 362 136 30 chr13 77359239 77359540 -42385358 - L2 LINE L2 -5 3267 2935 193 153 69 0 chr13 77360897 77360969 -42383929 + (TA)n Simple_repeat Simple_repeat 2 78 0 395 260 137 112 chr13 77363537 77364242 -42380656 + L1M2 LINE L1 445 1269 -5580 24 0 0 0 chr13 77364857 77364881 -42380017 + AT_rich Low_complexity Low_complexity 1 24 0 1795 100 25 0 chr13 77364890 77365180 -42379718 - AluSq SINE Alu 0 332 37 2297 62 10 10 chr13 77365180 77365484 -42379414 - AluY SINE Alu -7 304 1 1644 132 29 22 chr13 77365485 77365758 -42379140 - AluJo SINE Alu -8 304 30 1710 97 67 37 chr13 77365838 77366106 -42378792 + AluSg SINE Alu 35 310 0 255 253 61 0 chr13 77366187 77366286 -42378612 - L1MC4 LINE L1 -315 7727 7623 263 273 20 0 chr13 77366368 77366467 -42378431 - L1MC5 LINE L1 -542 7419 7319 2088 113 0 13 chr13 77366780 77367080 -42377818 + AluSg SINE Alu 1 296 -14 477 270 95 0 chr13 77367340 77367488 -42377410 + MIR SINE MIR 95 256 -6 511 253 34 0 chr13 77367911 77368057 -42376841 + L1MB1 LINE L1 5531 5681 -440 689 244 129 23 chr13 77368140 77368489 -42376409 + LTR16A LTR ERVL 60 445 -5 277 281 68 27 chr13 77368529 77368621 -42376277 + L1MB1 LINE L1 5734 5836 -285 1932 148 17 0 chr13 77368621 77368931 -42375967 + AluSx SINE Alu 1 312 0 277 281 68 27 chr13 77368931 77368984 -42375914 + L1MB1 LINE L1 5836 5885 -236 1086 83 0 0 chr13 77368987 77369120 -42375778 + AluSq/x SINE Alu 1 133 -179 2003 145 30 3 chr13 77369248 77369552 -42375346 - AluJb SINE Alu 0 312 1 1027 219 108 20 chr13 77369679 77369985 -42374913 - MER2 DNA MER2_type -10 335 3 201 362 0 0 chr13 77370593 77370651 -42374247 + L2 LINE L2 3251 3308 -5 973 193 33 9 chr13 77370763 77370976 -42373922 - MER20 DNA MER1_type -1 218 1 1828 117 80 15 chr13 77372488 77372814 -42372084 - MER47A DNA MER2_type 0 366 20 231 188 0 0 chr13 77373009 77373057 -42371841 + L1MB1 LINE L1 6078 6125 -64 1872 166 0 3 chr13 77373057 77373347 -42371551 + AluJb SINE Alu 1 289 -23 26 0 0 0 chr13 77373347 77373373 -42371525 + AT_rich Low_complexity Low_complexity 1 26 0 2833 57 3 0 chr13 77373389 77373741 -42371157 + THE1A LTR MaLR 3 355 0 405 102 0 0 chr13 77374467 77374526 -42370372 + (CA)n Simple_repeat Simple_repeat 1 59 0 2385 107 42 14 chr13 77375060 77375414 -42369484 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr13 77376250 77376276 -42368622 + AT_rich Low_complexity Low_complexity 1 26 0 2025 139 3 0 chr13 77376280 77376574 -42368324 + AluSx SINE Alu 1 295 -17 739 129 0 24 chr13 77377742 77377866 -42367032 + L1MA2 LINE L1 6180 6300 -4 187 257 171 0 chr13 77378893 77378963 -42365935 - MIR SINE MIR -160 102 21 420 253 33 0 chr13 77379317 77379408 -42365490 + MER5A DNA MER1_type 13 106 -83 390 276 61 0 chr13 77379698 77379796 -42365102 - L2 LINE L2 -1 3271 3168 859 161 157 21 chr13 77379884 77379988 -42364910 + Charlie1 DNA MER1_type 2439 2528 -233 2494 54 3 0 chr13 77379988 77380286 -42364612 + AluY SINE Alu 1 299 -12 859 161 157 21 chr13 77380286 77380461 -42364437 + Charlie1 DNA MER1_type 2528 2756 -5 2387 149 18 35 chr13 77380498 77380933 -42363965 + MSTA LTR MaLR 1 428 0 13306 132 67 10 chr13 77381062 77383223 -42361675 + L1MA3 LINE L1 19 2055 -5510 2277 114 0 0 chr13 77383223 77383521 -42361377 + AluSx SINE Alu 1 298 -14 2243 112 10 0 chr13 77383523 77383826 -42361072 + AluSq SINE Alu 1 306 -7 13306 132 67 10 chr13 77383826 77383904 -42360994 + L1MA3 LINE L1 2055 2389 -5176 * 14041 155 44 10 chr13 77383900 77386973 -42357925 + L1MA3 LINE L1 3259 6523 -1201 1978 145 10 3 chr13 77386973 77387277 -42357621 + AluSx SINE Alu 1 306 -6 14041 155 44 10 chr13 77387277 77388521 -42356377 + L1MA3 LINE L1 6523 7723 -1 23 0 0 0 chr13 77388879 77388902 -42355996 + AT_rich Low_complexity Low_complexity 1 23 0 1732 166 8 0 chr13 77390241 77390539 -42354359 - AluJb SINE Alu 0 317 18 244 132 0 0 chr13 77390539 77390577 -42354321 - Alu SINE Alu -134 169 132 234 150 0 0 chr13 77390686 77390726 -42354172 + (TA)n Simple_repeat Simple_repeat 1 40 0 261 234 33 33 chr13 77392217 77392307 -42352591 - MER5A DNA MER1_type -77 101 9 234 211 53 0 chr13 77392489 77392546 -42352352 - L1ME2 LINE L1 -38 6126 6067 454 216 16 40 chr13 77392564 77392689 -42352209 - L1ME2 LINE L1 -10 6154 6033 908 331 89 25 chr13 77392784 77392827 -42352071 + L2 LINE L2 2526 2565 -748 1493 160 75 18 chr13 77392827 77393109 -42351789 - AluJo SINE Alu -14 298 1 908 331 89 25 chr13 77393109 77393802 -42351096 + L2 LINE L2 2565 3308 -5 2249 117 0 7 chr13 77394409 77394717 -42350181 - AluSx SINE Alu -6 306 1 312 217 12 12 chr13 77394762 77394845 -42350053 + HsTC2 DNA Tc2 2 84 -1814 26 0 0 0 chr13 77396419 77396445 -42348453 + AT_rich Low_complexity Low_complexity 1 26 0 665 193 0 50 chr13 77396454 77396594 -42348304 - FLAM_A SINE Alu 0 133 1 1637 176 81 0 chr13 77396675 77396948 -42347950 + AluJo SINE Alu 1 295 -17 291 263 0 13 chr13 77397153 77397229 -42347669 + MER58 DNA MER1_type 22 96 -119 * 402 174 0 0 chr13 77397225 77397294 -42347604 + MER58 DNA MER1_type 2346 2414 -6 2549 80 0 0 chr13 77397804 77398115 -42346783 - AluY SINE Alu 0 311 1 14358 128 23 6 chr13 77398194 77400548 -42344350 - Tigger1 DNA MER2_type 0 2418 24 317 184 88 79 chr13 77400557 77400671 -42344227 + HAL1 LINE L1 967 1081 -1426 1304 162 4 18 chr13 77400671 77400900 -42343998 + AluJo SINE Alu 1 226 -86 539 159 83 28 chr13 77400900 77401045 -42343853 + L1MC4 LINE L1 6955 7107 -935 381 202 45 0 chr13 77401070 77401159 -42343739 + L1MC4 LINE L1 7164 7256 -786 2271 148 83 29 chr13 77401211 77401703 -42343195 + L1MC4 LINE L1 7378 7896 -146 301 227 34 23 chr13 77401713 77401801 -42343097 + L1MC4 LINE L1 7953 8041 -1 256 306 126 9 chr13 77401832 77401943 -42342955 - L3 LINE CR1 -988 589 466 1012 186 121 49 chr13 77402196 77402503 -42342395 + MER2 DNA MER2_type 1 329 -16 908 201 17 23 chr13 77402556 77402730 -42342168 - FAM SINE Alu -1 174 2 2073 98 4 0 chr13 77404315 77404590 -42340308 - AluSp SINE Alu 0 313 38 329 289 0 12 chr13 77405284 77405367 -42339531 + L2 LINE L2 3191 3272 0 573 263 242 14 chr13 77406287 77406576 -42338322 - L3 LINE CR1 -2 1575 1221 468 0 0 0 chr13 77407475 77407527 -42337371 + (TA)n Simple_repeat Simple_repeat 2 53 0 1062 229 4 33 chr13 77407847 77407917 -42336981 - MIR SINE MIR -21 241 171 1178 171 59 5 chr13 77407917 77408139 -42336759 + MER46A DNA MER2_type 3 236 0 1062 229 4 33 chr13 77408139 77408312 -42336586 - MIR SINE MIR -91 171 5 22 0 0 0 chr13 77409398 77409420 -42335478 + AT_rich Low_complexity Low_complexity 1 22 0 860 261 54 5 chr13 77410613 77410835 -42334063 - MIR SINE MIR -25 237 5 222 374 0 0 chr13 77411520 77411619 -42333279 + GA-rich Low_complexity Low_complexity 2 100 0 1341 231 59 17 chr13 77411807 77412162 -42332736 - LTR40c LTR ERVL 0 465 96 891 235 106 53 chr13 77412239 77412673 -42332225 - L1MC4 LINE L1 -11 8031 7575 484 269 0 0 chr13 77412712 77412842 -42332056 - L1MEc LINE L1 -1907 5034 4905 * 2898 240 56 84 chr13 77412840 77415327 -42329571 - L1MEc LINE L1 -2988 3953 1589 1342 242 120 32 chr13 77415323 77415798 -42329100 - L1MEc LINE L1 -5099 1324 808 * 324 258 135 44 chr13 77415906 77416135 -42328763 - L1MEc LINE L1 -5911 512 263 353 244 138 24 chr13 77416363 77416486 -42328412 - MIR SINE MIR -1 261 125 265 334 11 17 chr13 77417820 77417941 -42326957 - MIR3 SINE MIR -105 103 2 1725 162 3 30 chr13 77418296 77418599 -42326299 + AluJo SINE Alu 12 306 -6 376 267 170 12 chr13 77419120 77419285 -42325613 + MIR SINE MIR 72 262 0 334 234 75 0 chr13 77420338 77420432 -42324466 + GA-rich Low_complexity Low_complexity 2 102 0 180 0 0 0 chr13 77420521 77420541 -42324357 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 22 80 0 0 chr13 77421210 77421260 -42323638 + AT_rich Low_complexity Low_complexity 1 50 0 284 320 57 33 chr13 77421389 77421511 -42323387 + L2 LINE L2 3147 3271 -1 357 315 111 7 chr13 77421512 77421801 -42323097 + L1ME4a LINE L1 5567 5885 -236 1978 137 14 31 chr13 77422398 77422678 -42322220 + MER2 DNA MER2_type 1 275 -69 1789 141 37 24 chr13 77422678 77422975 -42321923 - AluJo SINE Alu -11 301 1 1978 137 14 31 chr13 77422975 77423044 -42321854 + MER2 DNA MER2_type 275 344 0 1059 90 0 0 chr13 77423289 77423423 -42321475 + AluY SINE Alu 1 134 -177 1973 133 30 0 chr13 77423423 77423725 -42321173 + AluY SINE Alu 1 311 0 2192 119 3 0 chr13 77423892 77424194 -42320704 + AluSx SINE Alu 1 303 -9 712 229 15 27 chr13 77424226 77424411 -42320487 + MIR SINE MIR 15 191 -56 192 311 267 6 chr13 77424923 77425084 -42319814 + L2 LINE L2 2083 2285 -1029 589 257 205 0 chr13 77425264 77425435 -42319463 - MIR SINE MIR -8 254 49 362 284 99 96 chr13 77425500 77425713 -42319185 - L2 LINE L2 -62 3251 3040 2425 65 0 3 chr13 77425713 77426007 -42318891 - AluY SINE Alu -18 293 1 362 284 99 96 chr13 77426007 77426115 -42318783 - L2 LINE L2 -273 3040 2926 1246 182 45 123 chr13 77426115 77426538 -42318360 + MLT1B LTR MaLR 1 390 0 362 284 99 96 chr13 77426538 77426620 -42318278 - L2 LINE L2 -387 2926 2846 2353 86 3 0 chr13 77426658 77426959 -42317939 - AluSq SINE Alu -10 303 2 292 269 115 31 chr13 77427056 77427186 -42317712 + MER20 DNA MER1_type 62 202 -17 646 199 87 0 chr13 77427439 77427600 -42317298 - MER104 DNA Tc2 0 180 6 209 355 40 8 chr13 77427671 77427795 -42317103 - L2 LINE L2 -202 3070 2943 245 29 0 29 chr13 77427875 77427910 -42316988 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 459 0 0 0 chr13 77427915 77427966 -42316932 + (CAAGA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr13 77429010 77429031 -42315867 + AT_rich Low_complexity Low_complexity 1 21 0 1654 185 0 17 chr13 77429031 77429318 -42315580 - AluJo SINE Alu -30 282 1 2267 74 7 3 chr13 77429407 77429704 -42315194 + AluY SINE Alu 1 298 -13 300 305 0 0 chr13 77429871 77429953 -42314945 + GA-rich Low_complexity Low_complexity 1 82 0 819 249 75 62 chr13 77431005 77431470 -42313428 + L1ME4a LINE L1 5483 5953 -168 2119 128 0 0 chr13 77432095 77432391 -42312507 + AluSx SINE Alu 1 296 -16 443 315 25 30 chr13 77433378 77433575 -42311323 + L1ME4a LINE L1 5448 5643 -478 234 292 31 10 chr13 77433745 77433841 -42311057 + L1ME4a LINE L1 5950 6047 -74 540 291 26 7 chr13 77433984 77434135 -42310763 + MIR SINE MIR 4 157 -105 832 195 174 5 chr13 77434227 77434417 -42310481 + MER58A DNA MER1_type 3 224 0 2151 117 0 0 chr13 77434947 77435237 -42309661 + AluSx SINE Alu 1 290 -22 1465 143 36 75 chr13 77435262 77435493 -42309405 + L1MA9 LINE L1 5464 5680 -632 2452 65 0 0 chr13 77435493 77435787 -42309111 + AluY SINE Alu 1 294 -17 1465 143 36 75 chr13 77435787 77435890 -42309008 + L1MA9 LINE L1 5680 5785 -527 583 189 0 0 chr13 77435890 77435980 -42308918 + 5S rRNA rRNA 1 90 -31 1223 220 167 5 chr13 77435980 77435999 -42308899 + L1MA9 LINE L1 5774 5789 -523 207 0 0 0 chr13 77435999 77436022 -42308876 + (CA)n Simple_repeat Simple_repeat 2 24 0 1223 220 167 5 chr13 77436022 77436433 -42308465 + L1MA9 LINE L1 5789 6274 -38 1812 161 0 4 chr13 77436482 77436755 -42308143 + AluSx SINE Alu 17 288 -24 381 75 0 0 chr13 77436762 77436815 -42308083 + (CATA)n Simple_repeat Simple_repeat 4 56 0 260 196 0 0 chr13 77438024 77438080 -42306818 + L1MC4 LINE L1 6648 6703 -1339 257 222 28 0 chr13 77438080 77438152 -42306746 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 1774 174 6 13 chr13 77438710 77439021 -42305877 + AluJb SINE Alu 1 309 -3 338 159 58 0 chr13 77439370 77439439 -42305459 + L1MA9 LINE L1 6235 6307 -5 2641 39 0 3 chr13 77440603 77440912 -42303986 + AluY SINE Alu 1 308 -3 219 336 39 29 chr13 77441105 77441209 -42303689 + L2 LINE L2 3167 3271 -1 21 0 0 0 chr13 77442503 77442524 -42302374 + AT_rich Low_complexity Low_complexity 1 21 0 1553 177 30 13 chr13 77442705 77443004 -42301894 - AluJo SINE Alu -8 304 1 23 33 0 0 chr13 77443366 77443396 -42301502 + AT_rich Low_complexity Low_complexity 1 30 0 540 333 106 75 chr13 77443663 77444051 -42300847 + L3 LINE CR1 858 1275 -302 738 178 0 8 chr13 77444051 77444180 -42300718 + FLAM_A SINE Alu 1 128 -5 540 333 106 75 chr13 77444180 77444422 -42300476 + L3 LINE CR1 1275 1508 -69 610 277 164 34 chr13 77444453 77444861 -42300037 - L2 LINE L2 0 3313 2853 1828 120 62 0 chr13 77444894 77445186 -42299712 + L1PA13 LINE L1 5851 6160 -3 646 322 32 28 chr13 77445221 77445504 -42299394 - L2 LINE L2 -557 2757 2474 328 316 41 0 chr13 77445509 77445607 -42299291 - MIR SINE MIR 0 262 161 1308 184 4 31 chr13 77445638 77445894 -42299004 + AluJo SINE Alu 61 309 -3 348 268 12 0 chr13 77445896 77445978 -42298920 - MIR SINE MIR -133 129 47 1361 323 63 26 chr13 77446057 77446776 -42298122 - L2 LINE L2 -880 2434 1690 219 318 159 17 chr13 77447880 77448119 -42296779 + L2 LINE L2 3025 3297 -16 1010 204 101 29 chr13 77448241 77448496 -42296402 - L1M4 LINE L1 -2260 3886 3604 2274 77 17 20 chr13 77448496 77448795 -42296103 - AluSx SINE Alu -14 298 1 1010 204 101 29 chr13 77448795 77448847 -42296051 - L1M4 LINE L1 -2542 3604 3557 854 201 15 20 chr13 77448844 77449048 -42295850 + L1M4 LINE L1 3892 4094 -2052 * 189 121 0 0 chr13 77450153 77450186 -42294712 + (CCG)n Simple_repeat Simple_repeat 2 34 0 360 176 0 0 chr13 77451039 77451107 -42293791 + (TA)n Simple_repeat Simple_repeat 1 68 0 21 0 0 0 chr13 77451497 77451518 -42293380 + AT_rich Low_complexity Low_complexity 1 21 0 180 348 0 29 chr13 77452505 77452574 -42292324 + L2 LINE L2 2587 2653 -661 415 277 143 34 chr13 77452576 77453027 -42291871 - L1MEd LINE L1 -4519 1647 1096 371 312 82 60 chr13 77453034 77453242 -42291656 - L1MEd LINE L1 -5050 1069 867 2304 106 0 0 chr13 77453242 77453535 -42291363 - AluSc SINE Alu -16 293 1 1576 170 13 48 chr13 77453539 77453851 -42291047 - AluJo SINE Alu -9 303 3 371 312 82 60 chr13 77453851 77454112 -42290786 - L1MEd LINE L1 -5254 865 602 2095 117 0 3 chr13 77454140 77454553 -42290345 - AluSx SINE Alu 0 412 1 213 183 0 33 chr13 77454795 77454855 -42290043 + (TTAAA)n Simple_repeat Simple_repeat 4 61 0 1630 88 13 0 chr13 77456032 77456258 -42288640 - L1PA8A LINE L1 -599 5532 5304 2816 103 17 2 chr13 77456274 77456682 -42288216 + L1PA10 LINE L1 5656 6069 -99 1528 238 162 60 chr13 77457885 77458208 -42286690 - L1MC4a LINE L1 -790 7018 6729 420 20 0 0 chr13 77458208 77458257 -42286641 + (TA)n Simple_repeat Simple_repeat 2 50 0 1528 238 162 60 chr13 77458257 77458551 -42286347 - L1MC4a LINE L1 -1079 6729 6338 890 277 122 66 chr13 77459230 77459792 -42285106 - L2 LINE L2 0 3313 2715 3180 250 84 94 chr13 77459793 77460813 -42284085 + L2 LINE L2 806 1808 -1506 2090 131 3 10 chr13 77460813 77461127 -42283771 + AluSp SINE Alu 1 312 -1 3180 250 84 94 chr13 77461127 77461581 -42283317 + L2 LINE L2 1808 2265 -1049 624 276 23 59 chr13 77461581 77461802 -42283096 + L2 LINE L2 2482 2694 -620 370 183 204 63 chr13 77461846 77461988 -42282910 - L2 LINE L2 -733 2581 2420 253 319 35 0 chr13 77461988 77462104 -42282794 + L1ME4a LINE L1 5506 5625 -496 439 282 45 63 chr13 77462609 77462804 -42282094 + MIR SINE MIR 27 216 -46 8221 42 4 4 chr13 77463840 77464874 -42280024 - L1P LINE L1 -3772 2374 1341 19849 30 0 0 chr13 77464874 77468048 -42276850 + L1PA3 LINE L1 2978 6155 0 201 307 200 0 chr13 77468157 77468232 -42276666 + MIR3 SINE MIR 96 185 -23 1973 280 98 43 chr13 77468388 77469629 -42275269 - HAL1 LINE L1 -723 1784 475 413 332 103 10 chr13 77470011 77470321 -42274577 - MLT1J2 LTR MaLR -30 420 82 470 258 113 0 chr13 77471074 77471198 -42273700 - AluJo SINE Alu -174 138 1 635 273 138 26 chr13 77471672 77471807 -42273091 + MIR SINE MIR 3 121 -141 2498 59 0 0 chr13 77471807 77472112 -42272786 + AluY SINE Alu 1 305 -6 635 273 138 26 chr13 77472112 77472207 -42272691 + MIR SINE MIR 121 259 -3 564 342 115 21 chr13 77472208 77472775 -42272123 - L2 LINE L2 -796 2518 1899 210 300 64 36 chr13 77473360 77473470 -42271428 - MIR SINE MIR -75 133 21 194 157 0 20 chr13 77473720 77473771 -42271127 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr13 77473809 77473831 -42271067 + AT_rich Low_complexity Low_complexity 1 22 0 1644 159 0 29 chr13 77473831 77474139 -42270759 - L1MC1 LINE L1 -5 6328 6030 476 299 80 15 chr13 77474155 77474429 -42270469 + L1MC1 LINE L1 5706 5997 -124 217 196 87 0 chr13 77474758 77474804 -42270094 + L2 LINE L2 3264 3313 0 1967 182 6 0 chr13 77475117 77475463 -42269435 + MER7A DNA MER2_type 1 346 0 189 94 0 0 chr13 77476407 77476439 -42268459 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr13 77476953 77476976 -42267922 + AT_rich Low_complexity Low_complexity 1 23 0 243 88 0 0 chr13 77477033 77477067 -42267831 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 82 0 0 chr13 77477458 77477507 -42267391 + AT_rich Low_complexity Low_complexity 1 49 0 232 339 0 0 chr13 77478038 77478100 -42266798 - L2 LINE L2 -5 3267 3206 292 368 56 8 chr13 77479442 77479567 -42265331 - L2 LINE L2 -31 3241 3111 22 56 0 0 chr13 77480159 77480195 -42264703 + AT_rich Low_complexity Low_complexity 1 36 0 2607 49 0 0 chr13 77480506 77480812 -42264086 + AluY SINE Alu 1 306 -5 1589 208 78 46 chr13 77481695 77482156 -42262742 - L1MC4 LINE L1 -356 7686 7211 358 188 98 0 chr13 77482161 77482273 -42262625 + L1MC4 LINE L1 7726 7848 -194 1253 330 167 12 chr13 77482533 77483639 -42261259 - L2 LINE L2 -474 2840 1563 244 294 0 0 chr13 77483920 77483971 -42260927 + MER5A DNA MER1_type 26 76 -113 390 273 58 52 chr13 77484081 77484235 -42260663 + MIR SINE MIR 54 208 -54 272 227 103 10 chr13 77485035 77485132 -42259766 + L1M4 LINE L1 3755 3860 -2286 413 288 88 36 chr13 77485278 77485528 -42259370 + L1M4 LINE L1 4286 4548 -1598 557 253 66 73 chr13 77485812 77486085 -42258813 - MLT1I LTR MaLR -16 393 123 829 233 124 26 chr13 77486177 77486524 -42258374 + HAL1 LINE L1 2127 2507 0 28 48 0 0 chr13 77486817 77486859 -42258039 + AT_rich Low_complexity Low_complexity 1 42 0 599 301 134 17 chr13 77487786 77488145 -42256753 + HAL1b LINE L1 102 502 -846 1500 250 23 18 chr13 77489237 77489633 -42255265 + MLT1C LTR MaLR 70 467 0 316 336 181 39 chr13 77489679 77489938 -42254960 + L2 LINE L2 2966 3261 -11 1978 103 4 0 chr13 77490175 77490447 -42254451 - AluSc SINE Alu -2 307 35 703 293 39 39 chr13 77490514 77490825 -42254073 - Charlie8 DNA MER1_type -2054 363 53 253 234 140 28 chr13 77491200 77491307 -42253591 - L2 LINE L2 0 3313 3195 250 269 240 0 chr13 77492109 77492213 -42252685 - MIR SINE MIR -17 245 117 23 0 0 0 chr13 77492324 77492347 -42252551 + AT_rich Low_complexity Low_complexity 1 23 0 686 197 0 0 chr13 77492352 77492474 -42252424 + FLAM_C SINE Alu 2 123 -10 183 398 51 10 chr13 77492474 77492572 -42252326 - MIR SINE MIR -155 107 6 25 31 0 0 chr13 77493918 77493950 -42250948 + AT_rich Low_complexity Low_complexity 1 32 0 392 296 102 57 chr13 77493979 77494416 -42250482 - L1ME LINE L1 -350 5771 5318 1373 158 56 8 chr13 77494535 77494801 -42250097 - L1MB2 LINE L1 -7 6164 5886 321 276 75 45 chr13 77494956 77495224 -42249674 - L1ME LINE L1 -1114 5032 4757 496 309 125 21 chr13 77495232 77495437 -42249461 - L1ME LINE L1 -1466 4680 4498 1886 219 0 3 chr13 77495437 77495803 -42249095 - MLT1A1 LTR MaLR 0 365 1 496 309 125 21 chr13 77495803 77495934 -42248964 - L1ME LINE L1 -1648 4498 4309 271 301 11 11 chr13 77496293 77496386 -42248512 + LTR16C LTR ERVL 295 387 -104 282 122 61 0 chr13 77496393 77496442 -42248456 - MLT2B1 LTR ERVL -5 515 464 360 185 23 29 chr13 77496447 77496620 -42248278 + (TA)n Simple_repeat Simple_repeat 2 173 0 716 298 82 7 chr13 77497314 77497596 -42247302 + L2 LINE L2 2290 2592 -722 399 145 0 0 chr13 77497635 77497704 -42247194 - L1MC2 LINE L1 -18 6326 6258 192 231 141 26 chr13 77498952 77499030 -42245868 - L2 LINE L2 0 3272 3186 364 134 60 0 chr13 77499376 77499510 -42245388 + (TA)n Simple_repeat Simple_repeat 2 143 0 194 269 19 0 chr13 77500261 77500313 -42244585 - MIR SINE MIR -69 139 87 285 315 81 0 chr13 77500329 77500440 -42244458 - L2 LINE L2 -40 3273 3154 21 0 0 0 chr13 77501629 77501650 -42243248 + AT_rich Low_complexity Low_complexity 1 21 0 561 294 52 4 chr13 77501797 77502028 -42242870 - L1ME2 LINE L1 -9 6155 5914 21 0 0 0 chr13 77502346 77502367 -42242531 + AT_rich Low_complexity Low_complexity 1 21 0 609 198 56 16 chr13 77502372 77502498 -42242400 + FLAM_C SINE Alu 2 132 -1 381 296 83 27 chr13 77502537 77503105 -42241793 - L1ME LINE L1 -2274 3872 3275 688 269 89 27 chr13 77503107 77503621 -42241277 - L1ME LINE L1 -2918 3228 2683 574 300 81 8 chr13 77503711 77504108 -42240790 - L1ME LINE L1 -3572 2574 2149 2087 208 116 12 chr13 77504303 77505142 -42239756 - L1MB8 LINE L1 -1 6177 5122 21 36 0 0 chr13 77505626 77505654 -42239244 + AT_rich Low_complexity Low_complexity 1 28 0 399 41 0 0 chr13 77505843 77505892 -42239006 + (TG)n Simple_repeat Simple_repeat 2 50 0 556 258 30 0 chr13 77506163 77506295 -42238603 - MLT1E LTR MaLR -406 187 52 379 296 9 0 chr13 77506615 77506723 -42238175 - MLT1E2 LTR MaLR 0 626 518 207 0 0 0 chr13 77507793 77507816 -42237082 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 249 276 57 89 chr13 77508442 77508565 -42236333 + L2 LINE L2 3190 3308 -5 367 282 194 35 chr13 77509673 77509900 -42234998 - L3 LINE CR1 -7 1570 1308 377 133 0 0 chr13 77510336 77510396 -42234502 - L1PB1 LINE L1 -8 6143 6084 450 65 0 0 chr13 77510397 77510459 -42234439 - L1PB1 LINE L1 -123 6028 5967 378 287 63 36 chr13 77511132 77511355 -42233543 - HAL1 LINE L1 -66 2441 2213 312 273 188 18 chr13 77511357 77511522 -42233376 - HAL1 LINE L1 -336 2171 1979 331 200 24 24 chr13 77511675 77511760 -42233138 - HAL1 LINE L1 -742 1765 1681 182 240 20 0 chr13 77511811 77511861 -42233037 - L2 LINE L2 0 3313 3263 370 315 94 0 chr13 77511870 77511997 -42232901 + L2 LINE L2 2678 2816 -498 795 325 55 12 chr13 77512052 77512378 -42232520 + L2 LINE L2 2964 3303 -10 293 313 113 68 chr13 77512499 77512914 -42231984 + L2 LINE L2 2831 3264 -8 188 304 206 11 chr13 77513275 77513367 -42231531 - MIR SINE MIR -27 235 126 9691 195 25 16 chr13 77513436 77516394 -42228504 + L1PA15 LINE L1 3160 6163 -2 322 285 15 44 chr13 77516410 77516547 -42228351 - L1 LINE L1 -1269 4877 4745 182 239 0 30 chr13 77516581 77516648 -42228250 + CT-rich Low_complexity Low_complexity 2 66 0 658 271 79 28 chr13 77516657 77516974 -42227924 - L1 LINE L1 -1430 4716 4384 45 45 0 0 chr13 77516977 77517043 -42227855 + AT_rich Low_complexity Low_complexity 1 66 0 405 258 17 33 chr13 77517144 77517264 -42227634 + L2 LINE L2 3196 3313 0 317 299 26 0 chr13 77517289 77517366 -42227532 + MIR SINE MIR 1 79 -183 328 310 86 0 chr13 77517433 77517549 -42227349 - MIR SINE MIR -88 174 49 462 276 77 9 chr13 77518056 77518277 -42226621 - L1 LINE L1 -1779 4367 4132 15205 104 27 15 chr13 77518279 77520522 -42224376 - Charlie3 DNA MER1_type -4 2706 436 1798 178 21 0 chr13 77520517 77520804 -42224094 - Charlie3 DNA MER1_type -2417 293 1 * 323 261 137 12 chr13 77520911 77521158 -42223740 - L1 LINE L1 -2166 3980 3684 1135 159 0 0 chr13 77522286 77522485 -42222413 + AluSq SINE Alu 113 311 0 412 257 30 0 chr13 77522497 77522598 -42222300 - MIR SINE MIR -89 173 70 31 26 0 0 chr13 77522952 77522990 -42221908 + AT_rich Low_complexity Low_complexity 1 38 0 1190 162 8 34 chr13 77523075 77523309 -42221589 - AluJo SINE Alu 0 312 85 320 317 138 0 chr13 77523530 77523653 -42221245 + MIR3 SINE MIR 21 160 -48 182 304 120 40 chr13 77525441 77525566 -42219332 + L2 LINE L2 3179 3313 0 1796 135 7 11 chr13 77525770 77526074 -42218824 + AluSx SINE Alu 18 312 0 431 264 161 66 chr13 77527109 77527351 -42217547 + Charlie8 DNA MER1_type 1 265 -2152 1756 212 70 2 chr13 77527603 77528000 -42216898 - MSTB LTR MaLR 0 426 3 2070 129 0 29 chr13 77528046 77528357 -42216541 - AluSx SINE Alu -10 302 1 284 284 159 0 chr13 77528505 77528593 -42216305 - MIR SINE MIR -153 109 8 553 315 163 28 chr13 77528686 77529153 -42215745 + L2 LINE L2 2443 2972 -342 180 0 0 0 chr13 77530760 77530780 -42214118 + (CA)n Simple_repeat Simple_repeat 1 20 0 1288 204 94 31 chr13 77530786 77531105 -42213793 - MER2 DNA MER2_type -6 339 1 3289 132 64 74 chr13 77531292 77532085 -42212813 - LTR1 LTR ERV1 0 785 1 309 194 0 16 chr13 77532916 77532978 -42211920 - MIR3 SINE MIR -1 207 147 192 358 127 30 chr13 77532921 77533055 -42211843 - L3b LINE CR1 -2 1581 1435 * 401 271 83 14 chr13 77533410 77533554 -42211344 - MIR SINE MIR -87 175 22 203 386 80 11 chr13 77533917 77534093 -42210805 - L3b LINE CR1 -19 1564 1377 1726 207 20 17 chr13 77535969 77536327 -42208571 + MLT1A2 LTR MaLR 11 369 -5 22 35 0 0 chr13 77536582 77536611 -42208287 + AT_rich Low_complexity Low_complexity 1 29 0 291 28 0 0 chr13 77537180 77537216 -42207682 + (TG)n Simple_repeat Simple_repeat 2 37 0 745 331 91 16 chr13 77537344 77537728 -42207170 + L2 LINE L2 1506 1918 -1396 930 212 19 60 chr13 77537784 77538168 -42206730 - L1MA9 LINE L1 -10 6324 5959 211 219 109 16 chr13 77538169 77538233 -42206665 + L2 LINE L2 1959 2028 -1286 674 309 96 6 chr13 77538271 77538585 -42206313 + L2 LINE L2 2018 2359 -955 1444 217 13 3 chr13 77538687 77538991 -42205907 - L1ME LINE L1 -510 5656 5350 315 163 0 0 chr13 77538992 77539072 -42205826 + CT-rich Low_complexity Low_complexity 1 80 0 875 222 128 27 chr13 77539072 77539404 -42205494 - L1ME LINE L1 -789 5357 5004 262 215 13 13 chr13 77539404 77539483 -42205415 - L1ME LINE L1 -2227 3919 3841 329 306 108 5 chr13 77539518 77539704 -42205194 - L1ME LINE L1 -2677 3469 3265 * 377 215 58 16 chr13 77539693 77539814 -42205084 - L1ME LINE L1 -3461 2685 2560 * 1109 130 26 96 chr13 77539793 77540063 -42204835 - L1MA9 LINE L1 0 6312 6062 250 218 154 0 chr13 77540091 77540169 -42204729 - L1ME LINE L1 -3580 2566 2477 186 43 0 0 chr13 77540655 77540678 -42204220 + (CA)n Simple_repeat Simple_repeat 2 24 0 2154 102 10 0 chr13 77541709 77542002 -42202896 + AluSq SINE Alu 1 296 -17 309 332 57 76 chr13 77542053 77542315 -42202583 + L2 LINE L2 2937 3193 -79 22 35 0 0 chr13 77542363 77542392 -42202506 + AT_rich Low_complexity Low_complexity 1 29 0 203 308 0 0 chr13 77542799 77542851 -42202047 - L2 LINE L2 -4 3268 3217 222 262 0 16 chr13 77544286 77544347 -42200551 + L2 LINE L2 3213 3272 0 1009 199 63 5 chr13 77544993 77545199 -42199699 - MER58A DNA MER1_type -6 218 1 770 197 42 36 chr13 77546147 77546340 -42198558 - L1MC3 LINE L1 -888 6897 6704 22 35 0 0 chr13 77548820 77548849 -42196049 + AT_rich Low_complexity Low_complexity 1 29 0 337 303 82 0 chr13 77549280 77549552 -42195346 + L1ME LINE L1 5531 5837 -284 279 173 0 0 chr13 77549622 77549674 -42195224 + (TG)n Simple_repeat Simple_repeat 2 53 0 45 55 0 0 chr13 77549737 77549810 -42195088 + AT_rich Low_complexity Low_complexity 1 73 0 371 299 103 20 chr13 77551595 77551936 -42192962 - L1ME4a LINE L1 -233 5888 5520 23 68 0 0 chr13 77552974 77553018 -42191880 + AT_rich Low_complexity Low_complexity 1 44 0 189 250 83 17 chr13 77553709 77553769 -42191129 - MIR SINE MIR -3 259 196 464 250 40 0 chr13 77553813 77553937 -42190961 - MIR SINE MIR -55 207 79 1319 226 86 18 chr13 77555210 77555546 -42189352 - MLT1A2 LTR MaLR -15 359 1 303 344 58 32 chr13 77557020 77557209 -42187689 + L1ME LINE L1 22 215 -5855 1845 161 37 11 chr13 77557380 77557735 -42187163 - MLT1A1 LTR MaLR -1 364 1 440 184 68 0 chr13 77559248 77559351 -42185547 + L1MA9 LINE L1 6171 6280 -32 568 143 8 79 chr13 77560235 77560361 -42184537 + L1MA2 LINE L1 17 133 -7432 * 12111 162 43 14 chr13 77560359 77564915 -42179983 + L1MA2 LINE L1 1849 6586 -1137 2138 82 10 7 chr13 77564915 77565207 -42179691 + AluY SINE Alu 1 293 -18 12111 162 43 14 chr13 77565207 77566376 -42178522 + L1MA2 LINE L1 6586 7720 -3 278 172 35 17 chr13 77566578 77566636 -42178262 - Tigger5 DNA MER2_type -3 2320 2262 349 241 38 13 chr13 77566707 77566786 -42178112 - Tigger5 DNA MER2_type -2242 81 1 2090 113 7 7 chr13 77567984 77568284 -42176614 + AluSp SINE Alu 1 300 -13 2069 198 13 5 chr13 77568415 77568804 -42176094 + MSTD LTR MaLR 5 396 0 921 319 82 52 chr13 77569053 77569313 -42175585 + L1MEd LINE L1 10 261 -5858 2032 126 60 20 chr13 77569313 77569661 -42175237 - THE1B LTR MaLR -2 362 1 921 319 82 52 chr13 77569661 77570265 -42174633 + L1MEd LINE L1 261 900 -5219 6296 220 69 12 chr13 77570385 77572176 -42172722 - L1 LINE L1 -2275 5290 3395 900 135 0 104 chr13 77572185 77572245 -42172653 - L1PA15 LINE L1 -2 6163 6098 2460 68 0 0 chr13 77572245 77572556 -42172342 - AluY SINE Alu 0 311 1 900 135 0 104 chr13 77572556 77572687 -42172211 - L1PA15 LINE L1 -67 6098 5992 2487 215 173 2 chr13 77572694 77573285 -42171613 - L1 LINE L1 -6858 707 16 1553 139 0 8 chr13 77573400 77573638 -42171260 - AluSg SINE Alu -14 296 61 2931 202 37 60 chr13 77573887 77574112 -42170786 + L1M1 LINE L1 3392 3620 -3945 2140 124 30 33 chr13 77574112 77574475 -42170423 + THE1B LTR MaLR 1 362 -2 11599 102 1 2 chr13 77574477 77576058 -42168840 + THE1B-int LTR MaLR 1 1580 0 2113 127 30 28 chr13 77576058 77576421 -42168477 + THE1B LTR MaLR 1 364 0 2931 202 37 60 chr13 77576421 77577158 -42167740 + L1M1 LINE L1 3619 4338 -3227 407 336 116 11 chr13 77577317 77577585 -42167313 + L1PA15-16 LINE L1 1268 1563 -5286 * 4074 251 39 37 chr13 77577571 77577829 -42167069 + L1PB4 LINE L1 690 946 -5257 1858 202 51 12 chr13 77577829 77578239 -42166659 - MSTB LTR MaLR 0 426 1 4074 251 39 37 chr13 77578239 77578683 -42166215 + L1PB4 LINE L1 946 1387 -4816 2181 80 0 40 chr13 77578683 77578984 -42165914 - AluY SINE Alu -22 289 1 4074 251 39 37 chr13 77578984 77579879 -42165019 + L1PB4 LINE L1 1387 2285 -3918 1299 151 43 19 chr13 77579880 77580138 -42164760 + MER21A LTR ERV1 1 264 -667 2453 226 31 24 chr13 77580143 77580695 -42164203 + MER21A LTR ERV1 376 931 0 11359 218 42 12 chr13 77580695 77581384 -42163514 + L1PB4 LINE L1 2282 2949 -3254 2404 66 0 3 chr13 77581384 77581688 -42163210 + AluY SINE Alu 1 303 -8 11359 218 42 12 chr13 77581688 77583874 -42161024 + L1PB4 LINE L1 2949 5243 -960 1085 156 0 0 chr13 77583933 77584112 -42160786 - L1P LINE L1 -1407 4739 4561 * 2473 184 58 6 chr13 77584110 77584680 -42160218 + L1PB4 LINE L1 5257 5847 -366 * 5441 129 17 8 chr13 77584668 77585567 -42159331 - L1PA8 LINE L1 -1362 4784 3878 5732 115 21 10 chr13 77585567 77586332 -42158566 + L1PA8 LINE L1 4771 5562 -610 2530 102 6 0 chr13 77586332 77586685 -42158213 + THE1A LTR MaLR 1 355 0 5732 115 21 10 chr13 77586685 77587301 -42157597 + L1PA8 LINE L1 5562 6170 -2 4953 123 33 2 chr13 77587301 77588092 -42156806 + L1PA11 LINE L1 5359 6173 -1 2037 172 10 3 chr13 77588098 77588482 -42156416 + L1PB4 LINE L1 5826 6212 -1 21 36 0 0 chr13 77589639 77589667 -42155231 + AT_rich Low_complexity Low_complexity 1 28 0 279 0 0 0 chr13 77590584 77590615 -42154283 + (TG)n Simple_repeat Simple_repeat 2 32 0 393 261 192 8 chr13 77590971 77591101 -42153797 + MER5A DNA MER1_type 36 189 0 4842 185 31 18 chr13 77591356 77593023 -42151875 - L1MA9 LINE L1 -47 6265 4621 1417 149 86 52 chr13 77593023 77593385 -42151513 - THE1C LTR MaLR -1 374 1 9474 132 12 36 chr13 77593385 77595002 -42149896 - THE1C-int LTR MaLR 0 1580 3 1593 174 58 25 chr13 77595004 77595367 -42149531 - THE1C LTR MaLR 0 375 1 4842 185 31 18 chr13 77595367 77595401 -42149497 - L1MA9 LINE L1 -1691 4621 4536 338 227 70 139 chr13 77595403 77595676 -42149222 - L1MDb LINE L1 -5380 703 450 269 339 35 9 chr13 77595751 77595866 -42149032 - L1MDb LINE L1 -5621 449 332 417 278 37 25 chr13 77596364 77596526 -42148372 - L1MDb LINE L1 -5906 164 1 1876 149 0 10 chr13 77596728 77597016 -42147882 + AluSx SINE Alu 1 285 -27 273 300 48 60 chr13 77597085 77597569 -42147329 - L1MEd LINE L1 -4866 1253 776 2078 111 0 75 chr13 77597834 77598167 -42146731 - AluSx SINE Alu -2 310 3 2114 91 7 0 chr13 77599090 77599366 -42145532 + AluSp SINE Alu 1 278 -35 249 33 0 0 chr13 77599367 77599397 -42145501 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 432 0 0 0 chr13 77599396 77599444 -42145454 + (CA)n Simple_repeat Simple_repeat 1 48 0 425 279 37 21 chr13 77602028 77602199 -42142699 - MIR SINE MIR -61 147 30 2098 110 7 10 chr13 77602286 77602585 -42142313 + AluSx SINE Alu 1 298 -14 1633 106 0 0 chr13 77602739 77602965 -42141933 - AluSg/x SINE Alu 0 310 85 541 187 27 35 chr13 77602965 77603212 -42141686 + CT-rich Low_complexity Low_complexity 10 479 0 253 339 61 12 chr13 77603253 77603418 -42141480 + L1M4 LINE L1 3969 4141 -2005 498 244 203 0 chr13 77603494 77603617 -42141281 + Tigger3(Golem) DNA MER2_type 1 148 -2881 4534 181 56 12 chr13 77603637 77605377 -42139521 + L1MA7 LINE L1 4283 6104 -187 1819 182 37 0 chr13 77605390 77605714 -42139184 - MER2 DNA MER2_type -7 338 3 687 193 51 0 chr13 77605714 77605890 -42139008 + L1MA7 LINE L1 6101 6285 -6 28 29 0 0 chr13 77606106 77606141 -42138757 + AT_rich Low_complexity Low_complexity 1 35 0 3024 221 12 3 chr13 77606635 77607282 -42137616 + MER82 DNA MER2_type 1 653 0 1772 162 78 3 chr13 77607350 77607708 -42137190 - L1MB5 LINE L1 0 6174 5790 22 0 0 0 chr13 77608227 77608249 -42136649 + AT_rich Low_complexity Low_complexity 1 22 0 715 188 0 0 chr13 77608252 77608380 -42136518 + L1PA16 LINE L1 6033 6160 -6 388 260 66 99 chr13 77608386 77608567 -42136331 - L1ME1 LINE L1 -11 6155 5981 1009 313 122 21 chr13 77609794 77610328 -42134570 - L3 LINE CR1 -75 1502 915 724 158 58 13 chr13 77610395 77610803 -42134095 + L1MB2 LINE L1 5450 6171 0 585 306 141 19 chr13 77610815 77611135 -42133763 - L3 LINE CR1 -787 790 432 478 282 25 12 chr13 77611299 77611462 -42133436 - MLT1H1 LTR MaLR -8 547 383 220 244 13 13 chr13 77612616 77612694 -42132204 + (TTA)n Simple_repeat Simple_repeat 3 80 0 928 146 82 9 chr13 77613337 77613556 -42131342 - L1MA8 LINE L1 -4 6287 6053 933 216 37 5 chr13 77615623 77615813 -42129085 + MER20 DNA MER1_type 24 219 0 8363 83 12 0 chr13 77616253 77618198 -42126700 - L1PA7 LINE L1 -10 6144 4185 1819 210 69 26 chr13 77618198 77619057 -42125841 - L1ME1 LINE L1 -613 5731 4845 12288 206 71 32 chr13 77619059 77624425 -42120473 + L1MA4 LINE L1 2 5523 -805 17322 194 86 9 chr13 77624429 77630469 -42114429 + L1PA16 LINE L1 2 6614 -255 1759 178 22 30 chr13 77630471 77630836 -42114062 + THE1B LTR MaLR 3 364 0 9327 117 75 29 chr13 77630836 77632346 -42112552 + THE1B-int LTR MaLR 1 1580 0 1555 202 32 14 chr13 77632347 77632694 -42112204 + THE1B LTR MaLR 7 359 -5 1136 175 35 4 chr13 77632711 77632939 -42111959 + L1PA16 LINE L1 6626 6860 -9 4048 167 40 29 chr13 77633454 77633884 -42111014 + L1MA4 LINE L1 5511 5956 -526 2718 29 0 0 chr13 77633884 77634195 -42110703 + AluYa5 SINE Alu 1 311 0 4048 167 40 29 chr13 77634195 77634598 -42110300 + L1MA4 LINE L1 5956 6353 -129 949 183 16 5 chr13 77634619 77634810 -42110088 - MSTB-int LTR MaLR -1458 193 1 2148 178 36 24 chr13 77634810 77635231 -42109667 - MSTB LTR MaLR 0 426 1 315 316 31 57 chr13 77635286 77635515 -42109383 - L1ME LINE L1 -551 5570 5352 257 301 66 54 chr13 77635519 77635911 -42108987 - L1ME LINE L1 -814 5332 4936 325 311 168 6 chr13 77636392 77636559 -42108339 - MIR3 SINE MIR -10 198 5 346 364 63 21 chr13 77638539 77638778 -42106120 + MIR SINE MIR 2 250 -12 530 68 0 0 chr13 77638796 77638869 -42106029 + L1PA5 LINE L1 6079 6151 -3 346 243 12 142 chr13 77639148 77639395 -42105503 + L2 LINE L2 2699 2913 -401 270 318 62 41 chr13 77639417 77639472 -42105426 + L2 LINE L2 3109 3161 -152 219 36 0 0 chr13 77639472 77639500 -42105398 + (TG)n Simple_repeat Simple_repeat 2 29 0 270 318 62 41 chr13 77639500 77639639 -42105259 + L2 LINE L2 3161 3307 -6 243 0 0 0 chr13 77639741 77639768 -42105130 + (CAA)n Simple_repeat Simple_repeat 2 28 0 184 323 65 73 chr13 77640974 77641098 -42103800 + L2 LINE L2 3150 3272 0 1880 214 58 40 chr13 77641317 77641818 -42103080 - MER67D LTR ERV1 -4 510 1 1623 192 0 0 chr13 77642466 77642742 -42102156 + 7SLRNA srpRNA srpRNA 1 276 -44 1121 279 128 43 chr13 77643608 77644139 -42100759 + MLT1G1 LTR MaLR 1 576 -19 1285 179 4 38 chr13 77644204 77644466 -42100432 + AluJb SINE Alu 1 253 -59 4992 169 26 19 chr13 77645100 77646559 -42098339 - L1PB4 LINE L1 -7 6149 4676 1438 191 0 59 chr13 77647181 77647382 -42097516 - AluJo SINE Alu -7 305 129 1572 201 0 7 chr13 77647382 77647681 -42097217 + AluSx SINE Alu 1 297 -15 1438 191 0 59 chr13 77647681 77647803 -42097095 - AluJo SINE Alu -183 129 1 245 148 0 19 chr13 77648026 77648080 -42096818 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 3173 193 51 9 chr13 77649187 77649855 -42095043 + L1MB1 LINE L1 5472 6167 -1 360 359 64 40 chr13 77650125 77650704 -42094194 - L2 LINE L2 -23 3290 2687 206 277 0 0 chr13 77650998 77651045 -42093853 - L2 LINE L2 -12 3301 3255 226 260 10 21 chr13 77651388 77651484 -42093414 - L1MC4 LINE L1 -1339 6703 6609 25 83 0 0 chr13 77652324 77652384 -42092514 + AT_rich Low_complexity Low_complexity 1 60 0 329 287 79 30 chr13 77653251 77653415 -42091483 + MER5B DNA MER1_type 1 172 -6 853 212 39 17 chr13 77653535 77653714 -42091184 + MER5A DNA MER1_type 6 188 -1 4868 123 59 50 chr13 77654527 77655483 -42089415 + L1MA4 LINE L1 5329 6292 -8 649 137 73 162 chr13 77656038 77656242 -42088656 - MER5A DNA MER1_type -3 186 1 537 224 0 0 chr13 77656706 77656804 -42088094 + MER81 DNA DNA 4 101 -13 331 316 53 43 chr13 77656823 77657032 -42087866 + L2 LINE L2 3094 3304 -9 460 305 80 59 chr13 77657351 77657440 -42087458 - MIR SINE MIR 0 262 176 2101 118 3 0 chr13 77657440 77657728 -42087170 + AluSx SINE Alu 3 291 -21 460 305 80 59 chr13 77657728 77657877 -42087021 - MIR SINE MIR -86 176 19 2125 157 48 85 chr13 77660331 77660814 -42084084 - MLT1C LTR MaLR -2 465 1 529 240 112 39 chr13 77662850 77663029 -42081869 - MIR SINE MIR 0 262 71 200 228 0 18 chr13 77663382 77663439 -42081459 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 430 227 34 0 chr13 77663691 77663810 -42081088 - MLT1E3 LTR MaLR -435 219 51 542 259 28 7 chr13 77663814 77663957 -42080941 - MLT2F LTR ERVL -517 146 1 24 0 0 0 chr13 77665162 77665186 -42079712 + AT_rich Low_complexity Low_complexity 1 24 0 333 258 305 0 chr13 77666374 77666564 -42078334 - MIR SINE MIR -14 248 1 230 313 0 0 chr13 77666765 77666832 -42078066 - MIR SINE MIR -108 154 88 442 261 159 20 chr13 77667038 77667233 -42077665 - MIR SINE MIR -13 249 28 403 247 22 0 chr13 77668951 77669040 -42075858 + MIR SINE MIR 17 107 -155 413 226 49 10 chr13 77669044 77669146 -42075752 + MIR SINE MIR 65 170 -92 2315 186 34 2 chr13 77669381 77669794 -42075104 - MSTB LTR MaLR 0 426 1 457 276 129 18 chr13 77670515 77670685 -42074213 + MIR3 SINE MIR 15 203 -5 274 234 11 43 chr13 77670756 77670850 -42074048 + GA-rich Low_complexity Low_complexity 3 93 0 2117 118 0 7 chr13 77674541 77674838 -42070060 - AluSg SINE Alu -15 295 1 325 307 33 27 chr13 77675012 77675162 -42069736 - L1MC4a LINE L1 -1878 5930 5780 1505 219 22 22 chr13 77675651 77676016 -42068882 - MLT1A1 LTR MaLR 0 365 1 1387 154 0 41 chr13 77676463 77676709 -42068189 - AluJb SINE Alu -8 304 69 23 33 0 0 chr13 77677385 77677415 -42067483 + AT_rich Low_complexity Low_complexity 1 30 0 213 94 0 0 chr13 77677425 77677457 -42067441 + (TA)n Simple_repeat Simple_repeat 2 33 0 751 92 42 0 chr13 77678607 77678727 -42066171 + L1MA3 LINE L1 6020 6144 -161 945 71 0 0 chr13 77678727 77678840 -42066058 + AluJb SINE Alu 15 127 -185 1093 98 17 6 chr13 77678841 77679015 -42065883 + L1MA3 LINE L1 6130 6305 0 2762 104 0 3 chr13 77680637 77681013 -42063885 - THE1C LTR MaLR 0 375 1 9791 126 33 15 chr13 77681013 77682564 -42062334 - THE1C-int LTR MaLR 0 1580 2 937 123 31 3 chr13 77682574 77682726 -42062172 - THE1C LTR MaLR 0 375 244 186 442 0 0 chr13 77682845 77682965 -42061933 - L2 LINE L2 -557 2757 2638 590 295 65 5 chr13 77683061 77683261 -42061637 + L1ME LINE L1 5504 5715 -406 2316 112 0 3 chr13 77683421 77683734 -42061164 + AluSq SINE Alu 1 312 -1 10746 54 1 1 chr13 77683988 77685360 -42059538 - L1P LINE L1 -3363 2783 1412 338 184 81 35 chr13 77685472 77685559 -42059339 + MIR SINE MIR 117 207 -55 237 120 84 0 chr13 77685959 77686101 -42058797 + (TA)n Simple_repeat Simple_repeat 1 154 0 35 24 0 0 chr13 77686110 77686152 -42058746 + AT_rich Low_complexity Low_complexity 1 42 0 279 133 0 0 chr13 77686685 77686730 -42058168 + (A)n Simple_repeat Simple_repeat 1 45 0 1559 161 8 11 chr13 77686734 77687001 -42057897 - L1M4 LINE L1 -576 5602 5337 38 51 0 0 chr13 77687013 77687072 -42057826 + AT_rich Low_complexity Low_complexity 1 59 0 1403 185 93 0 chr13 77687076 77687335 -42057563 - AluJb SINE Alu -26 286 4 507 229 0 14 chr13 77687337 77687481 -42057417 - L1M4 LINE L1 -816 5330 5189 1843 186 180 36 chr13 77687481 77688099 -42056799 + MER39 LTR ERV1 1 707 0 1054 69 0 0 chr13 77688099 77688229 -42056669 - AluSp/q SINE Alu -19 294 165 470 205 18 0 chr13 77688339 77688451 -42056447 + (CATATA)n Simple_repeat Simple_repeat 2 115 0 1329 133 49 13 chr13 77688454 77688679 -42056219 - THE1C LTR MaLR -142 233 1 2488 190 25 49 chr13 77689480 77690090 -42054808 - L1MB1 LINE L1 -3 6165 5571 206 369 62 8 chr13 77690989 77691119 -42053779 - MIR SINE MIR -95 167 31 543 320 105 38 chr13 77691726 77692289 -42052609 - L2 LINE L2 0 3313 2708 350 288 60 27 chr13 77692297 77692481 -42052417 - L2 LINE L2 -942 2372 2183 879 245 81 27 chr13 77692818 77693169 -42051729 + L1ME1 LINE L1 4479 4869 -1277 1099 221 141 65 chr13 77693268 77693713 -42051185 + MER66A LTR ERV1 97 478 0 409 249 119 60 chr13 77693718 77693919 -42050979 + L1ME1 LINE L1 4879 5091 -1055 912 160 24 30 chr13 77693919 77694088 -42050810 - L1PA16 LINE L1 -2 6164 5997 4457 252 53 11 chr13 77694088 77695505 -42049393 - L1P LINE L1 -2037 4109 2634 269 267 0 30 chr13 77695562 77695663 -42049235 + L1ME1 LINE L1 5194 5291 -855 1635 266 71 43 chr13 77695723 77696384 -42048514 + L1ME1 LINE L1 5397 6083 -83 2166 135 30 33 chr13 77696384 77696747 -42048151 - THE1B LTR MaLR 0 364 3 1635 266 71 43 chr13 77696747 77696829 -42048069 + L1ME1 LINE L1 6083 6161 -5 324 266 0 0 chr13 77698025 77698104 -42046794 - MIR SINE MIR -56 206 128 200 367 9 28 chr13 77699127 77699236 -42045662 - L2 LINE L2 -446 2868 2762 228 328 60 0 chr13 77699309 77699376 -42045522 + L2 LINE L2 3139 3209 -63 25 51 0 0 chr13 77701414 77701453 -42043445 + AT_rich Low_complexity Low_complexity 1 39 0 251 235 0 35 chr13 77702136 77702183 -42042715 + L1MC4 LINE L1 6615 6659 -1383 210 71 0 0 chr13 77702183 77702211 -42042687 + (CA)n Simple_repeat Simple_repeat 2 29 0 251 235 0 35 chr13 77702211 77702248 -42042650 + L1MC4 LINE L1 6659 6696 -1346 782 185 0 22 chr13 77702864 77702999 -42041899 + FLAM_C SINE Alu 1 132 -1 4442 118 215 109 chr13 77703047 77704455 -42040443 + pTR5 LTR ERV1 743 2438 0 7711 182 28 31 chr13 77706702 77707323 -42037575 - L1P LINE L1 -1915 4231 3609 2201 120 7 0 chr13 77707323 77707631 -42037267 - AluSx SINE Alu -2 310 1 7711 182 28 31 chr13 77707631 77708716 -42036182 - L1P LINE L1 -2537 3609 2531 4043 191 18 0 chr13 77708715 77709505 -42035393 + L1PA15 LINE L1 4238 5041 -1105 * 780 59 0 0 chr13 77709501 77709603 -42035295 - L1P LINE L1 -725 5429 5328 * 5171 152 16 2 chr13 77709603 77710706 -42034192 + L1PA15 LINE L1 5047 6161 -4 251 333 67 19 chr13 77713201 77713306 -42031592 - L2 LINE L2 -1 3271 3162 2079 201 19 7 chr13 77713306 77713770 -42031128 + LTR45B LTR ERV1 11 511 -14 1986 126 49 0 chr13 77714059 77714224 -42030674 - AluSq SINE Alu -14 299 113 198 71 0 0 chr13 77714224 77714252 -42030646 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1986 126 49 0 chr13 77714252 77714371 -42030527 - AluSq SINE Alu -200 113 1 180 0 0 0 chr13 77714513 77714533 -42030365 + (A)n Simple_repeat Simple_repeat 1 20 0 5342 78 18 3 chr13 77715166 77715896 -42029002 - L1PA8A LINE L1 -4 6127 5387 1976 75 0 0 chr13 77716034 77716273 -42028625 + AluY SINE Alu 71 309 -2 24 32 0 0 chr13 77716682 77716713 -42028185 + AT_rich Low_complexity Low_complexity 1 31 0 255 61 0 0 chr13 77716798 77716831 -42028067 + (TG)n Simple_repeat Simple_repeat 1 33 0 43 35 0 0 chr13 77717153 77717210 -42027688 + AT_rich Low_complexity Low_complexity 1 57 0 3098 61 5 7 chr13 77720409 77720818 -42024080 - L1PA7 LINE L1 -4 6150 5743 2007 80 0 0 chr13 77720818 77721080 -42023818 + L1P2 LINE L1 5349 5610 -544 311 372 51 24 chr13 77721546 77721839 -42023059 + L2 LINE L2 2034 2334 -980 1178 325 110 34 chr13 77722025 77722476 -42022422 + L2 LINE L2 694 1224 -2090 1882 156 3 7 chr13 77722476 77722778 -42022120 - AluSx SINE Alu -11 301 1 1178 325 110 34 chr13 77722778 77723065 -42021833 + L2 LINE L2 1224 1488 -1826 497 291 178 4 chr13 77723071 77723312 -42021586 + L2 LINE L2 2037 2319 -995 340 277 84 46 chr13 77723434 77723672 -42021226 + MLT1I LTR MaLR 161 407 -2 583 308 115 30 chr13 77723674 77723979 -42020919 + L2 LINE L2 2316 2646 -668 19451 39 3 2 chr13 77724089 77726654 -42018244 - L1P2 LINE L1 -618 5537 2969 8128 77 14 1 chr13 77726648 77727721 -42017177 + L1P LINE L1 11 1097 -5049 * 223 345 0 0 chr13 77727809 77727867 -42017031 + MIR SINE MIR 62 119 -89 401 198 118 75 chr13 77728441 77728628 -42016270 + L1MC5 LINE L1 7734 7928 -33 2995 109 23 9 chr13 77728824 77729264 -42015634 + MLT2A2 LTR ERVL 3 448 -5 189 253 246 68 chr13 77730153 77730434 -42014464 + L2 LINE L2 2889 3219 -94 843 163 21 14 chr13 77730441 77730704 -42014194 - FRAM SINE Alu 0 284 21 266 254 15 15 chr13 77730742 77730809 -42014089 + L2 LINE L2 3206 3272 0 422 325 122 34 chr13 77731719 77731956 -42012942 - L3 LINE CR1 -126 1451 1194 200 339 62 41 chr13 77732232 77732427 -42012471 + L2 LINE L2 177 375 -2939 332 292 0 58 chr13 77732458 77732578 -42012320 + MER94 DNA DNA 13 125 -9 1293 267 58 20 chr13 77732585 77733030 -42011868 - MLT1C LTR MaLR -5 462 1 188 344 108 19 chr13 77733049 77733206 -42011692 + L2 LINE L2 408 578 -2736 1440 227 42 55 chr13 77733670 77734071 -42010827 + MLT1F1 LTR MaLR 172 567 0 226 279 12 23 chr13 77735156 77735242 -42009656 + GA-rich Low_complexity Low_complexity 3 87 0 22 0 0 0 chr13 77735389 77735411 -42009487 + GC_rich Low_complexity Low_complexity 1 22 0 770 261 6 0 chr13 77735826 77735987 -42008911 - MER5A DNA MER1_type -5 184 23 180 0 0 0 chr13 77736149 77736169 -42008729 + (T)n Simple_repeat Simple_repeat 1 20 0 1998 70 0 4 chr13 77736732 77737005 -42007893 + L1PA4 LINE L1 5883 6154 -1 432 0 0 0 chr13 77737721 77737769 -42007129 + (CA)n Simple_repeat Simple_repeat 2 49 0 7480 135 16 15 chr13 77738341 77740745 -42004153 - L1MA2 LINE L1 0 7723 5316 7334 164 14 9 chr13 77740778 77742139 -42002759 + L1P LINE L1 3983 5353 -793 2187 136 0 0 chr13 77742139 77742448 -42002450 - AluSc SINE Alu 0 309 1 7334 164 14 9 chr13 77742448 77742462 -42002436 + L1P LINE L1 5353 5365 -781 6392 158 31 21 chr13 77742460 77744509 -42000389 - L1MA2 LINE L1 -2953 4612 2540 * 9534 187 23 13 chr13 77744511 77746315 -41998583 - L1MA2 LINE L1 -5737 1828 8 494 276 50 35 chr13 77746545 77746806 -41998092 + HAL1b LINE L1 611 875 -473 238 139 0 23 chr13 77747430 77747473 -41997425 + LTR33A LTR ERVL 454 495 -28 180 77 0 0 chr13 77747512 77747538 -41997360 + (CA)n Simple_repeat Simple_repeat 1 26 0 494 252 161 0 chr13 77747974 77748129 -41996769 - MER58A DNA MER1_type 0 224 45 481 226 57 24 chr13 77748384 77748508 -41996390 - MIR SINE MIR -12 250 123 180 379 68 0 chr13 77748592 77748724 -41996174 + L2 LINE L2 2918 3058 -214 1724 176 42 9 chr13 77748868 77748924 -41995974 - Tigger3(Golem) DNA MER2_type -884 347 294 441 0 0 0 chr13 77748924 77748973 -41995925 + (TA)n Simple_repeat Simple_repeat 1 49 0 1724 176 42 9 chr13 77748973 77749252 -41995646 - Tigger3(Golem) DNA MER2_type -937 294 1 372 22 0 0 chr13 77749253 77749298 -41995600 + (TG)n Simple_repeat Simple_repeat 1 45 0 189 175 0 0 chr13 77751118 77751158 -41993740 + (TAA)n Simple_repeat Simple_repeat 3 42 0 300 53 0 0 chr13 77751357 77751395 -41993503 + (TG)n Simple_repeat Simple_repeat 2 39 0 284 366 25 66 chr13 77751520 77751916 -41992982 - L2 LINE L2 -86 3186 2807 591 221 153 26 chr13 77751963 77752153 -41992745 - MIR SINE MIR -47 215 2 2077 126 27 33 chr13 77752244 77752610 -41992288 - THE1B LTR MaLR 0 364 1 330 400 15 0 chr13 77754068 77754198 -41990700 - L2 LINE L2 -7 3265 3134 182 339 113 63 chr13 77754875 77755114 -41989784 + L3 LINE CR1 156 406 -1171 199 337 20 10 chr13 77755200 77755301 -41989597 + L3 LINE CR1 1277 1378 -199 225 368 52 22 chr13 77755358 77755494 -41989404 - MIR SINE MIR -65 197 58 240 352 101 30 chr13 77755551 77755750 -41989148 + L3 LINE CR1 1362 1574 -3 325 301 224 7 chr13 77756761 77756904 -41987994 - MIR SINE MIR -36 226 53 649 286 47 0 chr13 77759111 77759324 -41985574 - MIR SINE MIR 0 262 40 30 45 0 0 chr13 77760096 77760140 -41984758 + AT_rich Low_complexity Low_complexity 1 44 0 2285 156 41 5 chr13 77760505 77760916 -41983982 + MSTA LTR MaLR 1 426 -2 347 373 91 28 chr13 77760959 77761466 -41983432 + L2 LINE L2 1076 1614 -1700 291 402 0 0 chr13 77761510 77761617 -41983281 - L2 LINE L2 -14 3258 3152 1890 107 31 73 chr13 77761648 77761965 -41982933 - AluSx SINE Alu -8 304 1 1147 275 106 37 chr13 77762094 77763340 -41981558 - L1M4 LINE L1 -1015 5131 3800 1399 183 58 66 chr13 77763349 77763742 -41981156 - MLT1B LTR MaLR 0 390 1 2002 228 72 15 chr13 77763742 77764188 -41980710 - MLT-int LTR MaLR 0 1723 1261 235 241 58 0 chr13 77764272 77764359 -41980539 - MLT-int LTR MaLR -968 767 676 2604 105 3 0 chr13 77764371 77764734 -41980164 - THE1B LTR MaLR 0 364 1 3005 198 25 63 chr13 77764836 77765608 -41979290 - MLT1A2-int LTR MaLR -629 742 1 1267 202 120 24 chr13 77765608 77765949 -41978949 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr13 77766637 77766658 -41978240 + AT_rich Low_complexity Low_complexity 1 21 0 2354 75 7 0 chr13 77769138 77769430 -41975468 + AluSx SINE Alu 1 294 -18 1318 268 84 25 chr13 77769433 77769983 -41974915 - L1ME3A LINE L1 -118 6052 5468 1449 228 3 0 chr13 77770344 77770656 -41974242 + AluSq SINE Alu 1 313 0 1925 184 66 25 chr13 77771104 77771511 -41973387 - Tigger2a DNA MER2_type 0 434 11 2563 61 0 0 chr13 77771936 77772246 -41972652 - AluY SINE Alu -1 310 1 489 314 118 50 chr13 77772610 77773052 -41971846 - L2 LINE L2 -12 3301 2830 1977 133 55 17 chr13 77773057 77773418 -41971480 + THE1C LTR MaLR 1 375 0 1373 256 136 48 chr13 77773431 77773969 -41970929 - MLT1E LTR MaLR -8 585 1 1187 174 130 51 chr13 77775498 77775774 -41969124 + AluJb SINE Alu 1 298 -4 5695 195 8 34 chr13 77775784 77777129 -41967769 + L1 LINE L1 3828 5138 -1008 252 266 16 0 chr13 77777152 77777216 -41967682 + MIR SINE MIR 177 241 -21 324 0 0 0 chr13 77778355 77778391 -41966507 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 204 0 0 chr13 77779507 77779556 -41965342 + GA-rich Low_complexity Low_complexity 3 51 0 27 0 0 0 chr13 77779840 77779867 -41965031 + AT_rich Low_complexity Low_complexity 1 27 0 7457 33 9 0 chr13 77779867 77781192 -41963706 - L1PA5 LINE L1 -7 6147 4818 2496 40 0 0 chr13 77781192 77781495 -41963403 + L1PA5 LINE L1 4513 4815 -1331 2353 242 2 38 chr13 77782427 77783002 -41961896 - MLT2B3 LTR ERVL 0 554 1 2987 48 19 0 chr13 77783080 77783457 -41961441 - L1PA5 LINE L1 -3 6151 5768 232 272 49 25 chr13 77783699 77783780 -41961118 - MIR3 SINE MIR -6 202 120 939 124 119 0 chr13 77783821 77783998 -41960900 + L1PB1 LINE L1 3 200 -6663 12402 140 117 12 chr13 77784000 77787678 -41957220 + L1PB1 LINE L1 636 4708 -2154 5566 102 60 1 chr13 77787656 77788233 -41956665 + L1PB1 LINE L1 5884 6536 -343 * 455 33 16 0 chr13 77788233 77788294 -41956604 + (TA)n Simple_repeat Simple_repeat 2 63 0 5566 102 60 1 chr13 77788294 77788660 -41956238 + L1PB1 LINE L1 6536 6879 0 27 0 0 0 chr13 77788729 77788756 -41956142 + AT_rich Low_complexity Low_complexity 1 27 0 35 98 0 0 chr13 77788859 77788971 -41955927 + AT_rich Low_complexity Low_complexity 1 112 0 236 115 49 49 chr13 77790928 77790989 -41953909 + (TTATG)n Simple_repeat Simple_repeat 4 64 0 1689 161 11 0 chr13 77791046 77791319 -41953579 + AluSx SINE Alu 1 276 -36 207 216 0 0 chr13 77791328 77791365 -41953533 + polypurine Low_complexity Low_complexity 4 40 0 5499 130 30 13 chr13 77791658 77792646 -41952252 + L1PA16 LINE L1 5156 6160 -6 1027 247 32 9 chr13 77792668 77793066 -41951832 + LTR16A LTR ERVL 14 450 0 1311 146 9 9 chr13 77793497 77793710 -41951188 + AluJb SINE Alu 86 298 -14 24 0 0 0 chr13 77793986 77794010 -41950888 + AT_rich Low_complexity Low_complexity 1 24 0 323 289 11 11 chr13 77794518 77794608 -41950290 - MIR SINE MIR -147 115 26 198 0 0 0 chr13 77794613 77794635 -41950263 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 982 101 0 20 chr13 77794637 77794786 -41950112 - L1PB1 LINE L1 -1 6150 6005 1526 133 208 3 chr13 77795028 77795326 -41949572 - MER46B DNA MER2_type 0 236 1 788 248 22 36 chr13 77795600 77795822 -41949076 + MER20 DNA MER1_type 1 219 0 263 214 31 0 chr13 77795927 77796025 -41948873 - MER96B DNA MER1_type? -257 160 60 428 313 80 12 chr13 77796091 77796190 -41948708 + MIR SINE MIR 1 118 -144 2061 121 0 4 chr13 77796190 77796505 -41948393 - AluSx SINE Alu 0 319 6 428 313 80 12 chr13 77796505 77796567 -41948331 + MIR SINE MIR 118 174 -88 314 296 51 105 chr13 77796834 77797128 -41947770 + MLT1J LTR MaLR 31 308 -203 4597 135 1 26 chr13 77797130 77797854 -41947044 + MER50 LTR ERV1 1 706 -28 297 248 35 92 chr13 77797865 77798006 -41946892 + MLT1J LTR MaLR 301 433 -78 201 74 0 0 chr13 77798747 77798774 -41946124 + (TAGA)n Simple_repeat Simple_repeat 1 27 0 710 330 0 23 chr13 77798994 77799209 -41945689 + LTR16C LTR ERVL 106 315 -176 222 318 48 0 chr13 77799486 77799549 -41945349 - L2 LINE L2 -12 3260 3195 630 338 134 10 chr13 77802450 77802838 -41942060 - L2 LINE L2 -37 3276 2841 1708 186 74 6 chr13 77802910 77803057 -41941841 - L1MB2 LINE L1 -13 6158 6012 262 284 95 45 chr13 77803057 77803321 -41941577 - L1MC3 LINE L1 -1783 6002 5726 213 378 81 30 chr13 77804251 77804648 -41940250 - L2 LINE L2 -557 2757 2341 385 304 66 44 chr13 77804797 77805024 -41939874 - MIR SINE MIR 0 262 31 225 94 0 0 chr13 77805815 77805847 -41939051 + (T)n Simple_repeat Simple_repeat 1 32 0 4798 97 29 10 chr13 77806687 77807859 -41937039 + SVA Other Other 1 1386 0 258 303 128 9 chr13 77808177 77808286 -41936612 + L2 LINE L2 3192 3313 0 1675 280 155 29 chr13 77809252 77810301 -41934597 - L2 LINE L2 -19 3294 2110 6969 41 0 7 chr13 77810364 77811221 -41933677 + L1PA5 LINE L1 5297 6147 -7 189 0 0 0 chr13 77811221 77811242 -41933656 + (TA)n Simple_repeat Simple_repeat 2 22 0 388 277 43 37 chr13 77811311 77811499 -41933399 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr13 77811725 77811753 -41933145 + AT_rich Low_complexity Low_complexity 1 28 0 218 91 23 45 chr13 77812176 77812220 -41932678 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 194 0 39 0 chr13 77812220 77812246 -41932652 + (CA)n Simple_repeat Simple_repeat 2 28 0 324 0 0 0 chr13 77812636 77812672 -41932226 + (TG)n Simple_repeat Simple_repeat 2 37 0 1266 263 82 5 chr13 77812768 77813206 -41931692 - MLT1H LTR MaLR 0 549 78 278 270 89 89 chr13 77814081 77814462 -41930436 - L1MC4a LINE L1 -1854 5954 5574 25 83 0 0 chr13 77814608 77814668 -41930230 + AT_rich Low_complexity Low_complexity 1 60 0 218 180 0 49 chr13 77815029 77815090 -41929808 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 699 288 11 5 chr13 77816933 77817117 -41927781 + MER5A DNA MER1_type 1 185 -4 5316 66 3 4 chr13 77817596 77818290 -41926608 + L1PA10 LINE L1 5474 6166 -2 222 375 45 23 chr13 77819516 77819692 -41925206 + MIR SINE MIR 40 219 -43 334 339 58 6 chr13 77820818 77820989 -41923909 - MER5A DNA MER1_type -3 186 7 2247 162 75 37 chr13 77821555 77822074 -41922824 + L1MA9 LINE L1 5773 6311 -1 2148 119 10 0 chr13 77822493 77822796 -41922102 - AluSq SINE Alu -2 311 6 324 313 88 21 chr13 77823168 77823360 -41921538 + MIR SINE MIR 47 251 -11 294 29 0 0 chr13 77824760 77824795 -41920103 + (TG)n Simple_repeat Simple_repeat 1 35 0 507 300 94 9 chr13 77825018 77825338 -41919560 + L1ME4a LINE L1 5481 5827 -294 221 0 35 0 chr13 77825476 77825505 -41919393 + (TA)n Simple_repeat Simple_repeat 2 31 0 1486 210 13 23 chr13 77826526 77826836 -41918062 - MER61A LTR ERV1 -36 307 1 200 122 41 0 chr13 77826888 77826937 -41917961 + A-rich Low_complexity Low_complexity 2 52 0 2087 101 3 14 chr13 77827053 77827361 -41917537 - AluSx SINE Alu 0 305 1 313 329 125 53 chr13 77827428 77828007 -41916891 - L2 LINE L2 -12 3260 2624 1419 139 8 4 chr13 77828021 77828273 -41916625 + L1MA4A LINE L1 6040 6292 -11 427 171 34 11 chr13 77828298 77828473 -41916425 + (TA)n Simple_repeat Simple_repeat 2 180 0 201 234 16 31 chr13 77828740 77828804 -41916094 + MIR SINE MIR 150 212 -50 280 282 0 14 chr13 77830275 77830346 -41914552 - L2 LINE L2 0 3313 3244 215 88 61 48 chr13 77830382 77830529 -41914369 + (TA)n Simple_repeat Simple_repeat 2 150 0 194 165 78 0 chr13 77830595 77830710 -41914188 + (ATATG)n Simple_repeat Simple_repeat 2 125 0 239 138 44 55 chr13 77830748 77830929 -41913969 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 328 133 97 12 chr13 77831070 77831235 -41913663 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 286 109 26 70 chr13 77831222 77831538 -41913360 + (TA)n Simple_repeat Simple_repeat 1 301 0 * 4486 187 37 66 chr13 77831555 77833388 -41911510 - L1MA9 LINE L1 -57 6255 4541 2362 161 52 9 chr13 77833592 77834038 -41910860 + MLT1C LTR MaLR 1 465 -2 233 383 92 27 chr13 77834150 77834563 -41910335 - L2 LINE L2 -414 2900 2461 855 194 19 0 chr13 77835373 77835528 -41909370 - FRAM SINE Alu -19 157 1 831 243 139 32 chr13 77835941 77836520 -41908378 - L1M3de LINE L1 -4519 1784 1122 189 359 93 53 chr13 77836904 77837302 -41907596 + L2 LINE L2 2335 2748 -566 224 240 60 0 chr13 77837308 77837358 -41907540 - L2 LINE L2 0 3313 3261 392 340 75 56 chr13 77837616 77838095 -41906803 - L2 LINE L2 -562 2752 2265 401 292 82 33 chr13 77838546 77838787 -41906111 + MLT1H LTR MaLR 310 549 0 225 339 0 0 chr13 77838985 77839047 -41905851 - MIR SINE MIR -148 114 53 2256 100 3 3 chr13 77839675 77840014 -41904884 + AluSp SINE Alu 1 339 0 1283 169 36 28 chr13 77840086 77840201 -41904697 - MLT1D LTR MaLR 0 505 392 1423 244 10 39 chr13 77840201 77840586 -41904312 - MLT1A2 LTR MaLR 0 374 1 1283 169 36 28 chr13 77840586 77840719 -41904179 - MLT1D LTR MaLR -113 392 255 1771 173 46 74 chr13 77840727 77841184 -41903714 - MLT1C LTR MaLR -8 459 16 800 204 39 111 chr13 77841196 77841476 -41903422 - MLT1D LTR MaLR -245 260 1 255 133 0 0 chr13 77841970 77842015 -41902883 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 82 0 0 chr13 77842190 77842239 -41902659 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr13 77842764 77842787 -41902111 + AT_rich Low_complexity Low_complexity 1 23 0 222 91 0 0 chr13 77843511 77843544 -41901354 + (TG)n Simple_repeat Simple_repeat 2 34 0 27 0 0 0 chr13 77843833 77843860 -41901038 + AT_rich Low_complexity Low_complexity 1 27 0 222 37 0 0 chr13 77844257 77844284 -41900614 + (TG)n Simple_repeat Simple_repeat 1 27 0 209 33 33 0 chr13 77844284 77844314 -41900584 + (GA)n Simple_repeat Simple_repeat 2 32 0 331 221 0 19 chr13 77844656 77844760 -41900138 + CT-rich Low_complexity Low_complexity 1 102 0 990 147 76 14 chr13 77844889 77845100 -41899798 - L1MC2 LINE L1 -9 6335 6112 1369 203 22 82 chr13 77845893 77846257 -41898641 + MLT1B LTR MaLR 49 390 0 2032 122 10 0 chr13 77847051 77847347 -41897551 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr13 77848941 77848966 -41895932 + AT_rich Low_complexity Low_complexity 1 25 0 232 211 84 0 chr13 77849031 77849102 -41895796 - MLT1B LTR MaLR 0 595 519 1543 165 97 56 chr13 77849104 77849623 -41895275 - MER67C LTR ERV1 -3 511 15 4399 220 84 27 chr13 77850555 77851588 -41893310 - Charlie1a DNA MER1_type -1317 1444 316 1640 78 5 0 chr13 77851588 77851793 -41893105 + AluSp SINE Alu 93 298 -15 4399 220 84 27 chr13 77851793 77852093 -41892805 - Charlie1a DNA MER1_type -2445 316 35 255 317 20 20 chr13 77852143 77852244 -41892654 + L2 LINE L2 3162 3262 -51 732 222 216 31 chr13 77852330 77852686 -41892212 + MER69 DNA AcHobo 803 2526 0 195 319 85 21 chr13 77853489 77853630 -41891268 + L3 LINE CR1 1204 1353 -224 209 305 0 0 chr13 77854042 77854101 -41890797 + (CA)n Simple_repeat Simple_repeat 2 60 0 18756 92 13 19 chr13 77854360 77856197 -41888701 + L1PA5 LINE L1 3 1822 -4324 2272 68 0 0 chr13 77856197 77856475 -41888423 + AluY SINE Alu 1 278 -33 18756 92 13 19 chr13 77856475 77857333 -41887565 + L1PA5 LINE L1 1822 2683 -3463 27831 55 6 9 chr13 77857433 77857553 -41887345 + L1P2 LINE L1 1739 1858 -4296 2272 68 0 0 chr13 77857553 77857831 -41887067 + AluY SINE Alu 1 278 -33 27831 55 6 9 chr13 77857831 77861740 -41883158 + L1P2 LINE L1 1858 5754 -400 19157 68 1 2 chr13 77861841 77865189 -41879709 + L1PA5 LINE L1 2794 6150 -4 295 314 8 32 chr13 77866314 77866438 -41878460 + MIR3 SINE MIR 85 205 -3 1850 60 11 34 chr13 77866579 77866848 -41878050 - L1PA7 LINE L1 -2 6152 5890 387 315 9 0 chr13 77867039 77867147 -41877751 + L2 LINE L2 3164 3272 0 810 276 0 36 chr13 77867250 77867475 -41877423 + MER58A DNA MER1_type 2 218 -6 1382 200 146 12 chr13 77870733 77871068 -41873830 - MLT1B LTR MaLR -10 380 1 1864 162 36 38 chr13 77871100 77871465 -41873433 + THE1B LTR MaLR 1 364 0 11190 111 6 6 chr13 77871466 77873044 -41871854 + THE1B-int LTR MaLR 2 1580 0 2041 150 30 35 chr13 77873044 77873410 -41871488 + THE1B LTR MaLR 1 364 0 351 289 67 0 chr13 77873728 77873832 -41871066 + MIR SINE MIR 82 192 -70 453 333 75 0 chr13 77874312 77874486 -41870412 - MIR SINE MIR -71 191 5 23 33 0 0 chr13 77874544 77874574 -41870324 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 77874643 77874664 -41870234 + AT_rich Low_complexity Low_complexity 1 21 0 347 278 86 62 chr13 77874716 77874878 -41870020 - MIR SINE MIR -3 259 94 326 42 21 0 chr13 77876383 77876431 -41868467 + (TG)n Simple_repeat Simple_repeat 1 49 0 228 245 0 0 chr13 77876431 77876480 -41868418 + GA-rich Low_complexity Low_complexity 2 50 0 363 23 0 0 chr13 77878767 77878811 -41866087 + (TG)n Simple_repeat Simple_repeat 2 45 0 2250 100 7 7 chr13 77879090 77879399 -41865499 + AluSc SINE Alu 1 309 0 37 23 0 0 chr13 77879920 77879964 -41864934 + AT_rich Low_complexity Low_complexity 1 44 0 294 288 122 7 chr13 77880268 77880407 -41864491 + L1MC4 LINE L1 7357 7511 -531 1668 209 35 54 chr13 77880422 77880705 -41864193 - LTR52 LTR ERVL -3 418 144 2454 140 42 7 chr13 77880705 77881133 -41863765 - MER65A LTR ERV1 -2 443 1 1668 209 35 54 chr13 77881133 77881275 -41863623 - LTR52 LTR ERVL -277 144 1 743 258 97 45 chr13 77881276 77881769 -41863129 + L1MC4 LINE L1 7524 8042 0 1889 194 55 2 chr13 77882152 77882586 -41862312 + L1MA9 LINE L1 3385 3841 -2305 1457 201 48 23 chr13 77882586 77882958 -41861940 + MSTA LTR MaLR 3 375 0 6710 162 40 33 chr13 77882958 77883082 -41861816 + L1MA9 LINE L1 3835 3957 -2227 2151 129 0 0 chr13 77883082 77883385 -41861513 + AluSp SINE Alu 1 303 -10 6710 162 40 33 chr13 77883385 77885154 -41859744 + L1MA9 LINE L1 3957 5611 -573 315 0 0 0 chr13 77885154 77885189 -41859709 + (TG)n Simple_repeat Simple_repeat 2 36 0 6710 162 40 33 chr13 77885189 77885767 -41859131 + L1MA9 LINE L1 5611 6184 0 23 33 0 0 chr13 77886989 77887019 -41857879 + AT_rich Low_complexity Low_complexity 1 30 0 579 315 97 55 chr13 77887377 77888912 -41855986 + L1M4 LINE L1 2242 3972 -2174 443 91 34 11 chr13 77888939 77889027 -41855871 + CT-rich Low_complexity Low_complexity 1 90 0 240 382 126 37 chr13 77890074 77890621 -41854277 - L2 LINE L2 -341 2973 2378 240 333 71 91 chr13 77890871 77891333 -41853565 + L2 LINE L2 2820 3272 0 362 291 63 8 chr13 77891522 77891649 -41853249 + MIR SINE MIR 40 173 -89 786 231 51 14 chr13 77891792 77892086 -41852812 - L1MC5 LINE L1 -35 7926 7622 1599 156 95 12 chr13 77892177 77892523 -41852375 - L1MA9 LINE L1 0 6312 5938 4705 174 44 42 chr13 77892548 77894060 -41850838 - L1MA4 LINE L1 -10 6290 4753 426 365 42 23 chr13 77894097 77894360 -41850538 - LTR33 LTR ERVL -253 268 1 616 253 98 65 chr13 77894711 77895106 -41849792 + MLT1J LTR MaLR 92 562 -26 47 0 0 0 chr13 77895735 77895782 -41849116 + AT_rich Low_complexity Low_complexity 1 47 0 467 331 37 33 chr13 77896554 77896799 -41848099 - MIR SINE MIR 0 262 17 1781 137 23 23 chr13 77896850 77897156 -41847742 + MLT1C LTR MaLR 158 463 -4 2197 106 10 19 chr13 77897819 77898130 -41846768 - AluSx SINE Alu -4 308 1 1182 184 108 177 chr13 77898212 77898549 -41846349 - MER67C LTR ERV1 -3 511 225 1985 47 0 12 chr13 77898549 77898803 -41846095 + L1PA5 LINE L1 5902 6152 -2 1182 184 108 177 chr13 77898803 77899014 -41845884 - MER67C LTR ERV1 -289 225 1 2583 40 0 3 chr13 77899075 77899376 -41845522 + AluY SINE Alu 5 304 -7 188 231 0 0 chr13 77899478 77899517 -41845381 + MIR SINE MIR 106 144 -64 189 0 0 0 chr13 77901002 77901023 -41843875 + (TG)n Simple_repeat Simple_repeat 2 22 0 458 276 14 99 chr13 77901421 77901499 -41843399 - MIR SINE MIR -5 257 174 2093 123 3 0 chr13 77901499 77901784 -41843114 + AluSx SINE Alu 1 286 -26 458 276 14 99 chr13 77901784 77901926 -41842972 - MIR SINE MIR -88 174 56 189 0 0 0 chr13 77904014 77904035 -41840863 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 281 286 106 73 chr13 77904185 77904430 -41840468 + MIR SINE MIR 6 258 -4 564 223 43 0 chr13 77905313 77905452 -41839446 - L1MA10 LINE L1 -1 6333 6189 962 245 61 23 chr13 77905582 77905892 -41839006 - L1ME2 LINE L1 -198 5966 5645 1923 252 43 27 chr13 77905908 77906472 -41838426 - L1MEc LINE L1 -5797 599 27 24 0 0 0 chr13 77906935 77906959 -41837939 + AT_rich Low_complexity Low_complexity 1 24 0 2731 169 31 14 chr13 77908522 77908865 -41836033 + L1MA10 LINE L1 5767 6124 -210 1349 164 117 44 chr13 77908865 77909139 -41835759 + AluSx SINE Alu 1 294 -18 2731 169 31 14 chr13 77909139 77909347 -41835551 + L1MA10 LINE L1 6124 6327 -7 2020 115 0 7 chr13 77909545 77909831 -41835067 - AluSx SINE Alu -28 284 1 297 0 0 0 chr13 77909983 77910016 -41834882 + (A)n Simple_repeat Simple_repeat 1 33 0 2088 124 10 3 chr13 77910375 77910673 -41834225 - AluSq SINE Alu -13 300 1 3607 162 11 2 chr13 77910791 77911422 -41833476 - L1MA6 LINE L1 -4 6296 5660 575 227 98 0 chr13 77912583 77912715 -41832183 + MER58A DNA MER1_type 4 148 0 639 248 52 149 chr13 77914717 77915181 -41829717 - LTR16A1 LTR ERVL -12 445 27 365 332 48 9 chr13 77915204 77915433 -41829465 + HAL1b LINE L1 392 629 -719 24 32 0 0 chr13 77915577 77915608 -41829290 + AT_rich Low_complexity Low_complexity 1 31 0 225 242 0 32 chr13 77915803 77915865 -41829033 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 2194 119 10 0 chr13 77915976 77916286 -41828612 + AluSp SINE Alu 1 313 0 326 259 156 65 chr13 77916311 77916574 -41828324 + L1 LINE L1 2206 2492 -3654 1954 184 22 3 chr13 77916834 77917192 -41827706 + MLT1A1 LTR MaLR 1 365 0 349 292 146 29 chr13 77917210 77917491 -41827407 + L1 LINE L1 2861 3174 -2972 729 320 76 53 chr13 77917676 77918541 -41826357 + L1 LINE L1 3545 4429 -1717 2168 123 0 0 chr13 77918596 77918898 -41826000 + AluSg SINE Alu 1 302 -8 375 207 71 116 chr13 77918919 77919117 -41825781 + L1MC5 LINE L1 6961 7149 -812 913 253 173 43 chr13 77919140 77919611 -41825287 - L1M4c LINE L1 -4846 1696 1287 333 0 0 0 chr13 77919611 77919648 -41825250 + (TA)n Simple_repeat Simple_repeat 2 38 0 913 253 173 43 chr13 77919648 77919947 -41824951 - L1M4c LINE L1 -5255 1287 875 310 321 100 21 chr13 77920118 77920258 -41824640 - L1ME LINE L1 -5582 488 338 180 77 0 0 chr13 77920667 77920693 -41824205 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1747 170 0 3 chr13 77920696 77920985 -41823913 - AluSx SINE Alu -24 288 1 556 231 59 43 chr13 77921004 77921259 -41823639 + L1MC5 LINE L1 7645 7903 -58 269 200 18 0 chr13 77921543 77921598 -41823300 - MIR SINE MIR -12 250 195 2201 118 7 0 chr13 77922156 77922462 -41822436 - AluSp SINE Alu -5 308 1 499 218 31 122 chr13 77923565 77923794 -41821104 + L2 LINE L2 3097 3304 -9 2102 163 72 8 chr13 77924243 77924643 -41820255 - MSTB LTR MaLR 0 426 1 23 86 0 0 chr13 77926232 77926290 -41818608 + AT_rich Low_complexity Low_complexity 1 58 0 271 224 19 19 chr13 77927702 77927809 -41817089 + GA-rich Low_complexity Low_complexity 3 109 0 780 151 0 32 chr13 77927836 77928022 -41816876 + GA-rich Low_complexity Low_complexity 1 180 0 1181 100 5 9 chr13 77928028 77928255 -41816643 + (GGA)n Simple_repeat Simple_repeat 1 226 0 405 0 0 0 chr13 77929092 77929137 -41815761 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1343 276 26 32 chr13 77929708 77930175 -41814723 + LTR16B LTR ERVL 1 464 0 347 222 66 72 chr13 77930641 77930721 -41814177 - L1MEd LINE L1 -5240 879 800 1915 154 7 0 chr13 77930721 77931013 -41813885 - AluSx SINE Alu -18 294 1 347 222 66 72 chr13 77931013 77931099 -41813799 - L1MEd LINE L1 -5319 800 714 2402 93 3 0 chr13 77932281 77932593 -41812305 + AluSp SINE Alu 1 313 0 516 328 38 61 chr13 77932852 77933197 -41811701 - L2 LINE L2 0 3313 2977 2067 127 0 0 chr13 77933413 77933704 -41811194 + AluSx SINE Alu 1 291 -21 390 42 0 0 chr13 77933706 77933754 -41811144 + (TA)n Simple_repeat Simple_repeat 2 49 0 288 277 125 9 chr13 77933846 77933958 -41810940 + L3b LINE CR1 1189 1313 -270 347 308 45 19 chr13 77934276 77934432 -41810466 + MIR SINE MIR 53 212 -50 272 188 16 0 chr13 77934975 77935039 -41809859 + GA-rich Low_complexity Low_complexity 3 67 0 418 317 53 76 chr13 77935125 77935522 -41809376 - MLT1J LTR MaLR -94 417 30 2514 224 67 3 chr13 77935824 77936049 -41808849 - MER82 DNA MER2_type -15 638 429 612 0 0 0 chr13 77936049 77936117 -41808781 + (TA)n Simple_repeat Simple_repeat 2 69 0 2514 224 67 3 chr13 77936117 77936471 -41808427 - MER82 DNA MER2_type -224 429 22 538 80 13 0 chr13 77937143 77937218 -41807680 - L1PA7 LINE L1 -4 6150 6075 733 96 0 0 chr13 77937218 77937322 -41807576 + L1P LINE L1 4732 4835 -1311 1902 126 10 27 chr13 77937459 77937632 -41807266 - AluSx SINE Alu -23 289 122 219 88 0 0 chr13 77937632 77937666 -41807232 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1902 126 10 27 chr13 77937666 77937786 -41807112 - AluSx SINE Alu -190 122 1 2207 98 0 3 chr13 77939840 77940145 -41804753 + AluSg SINE Alu 1 304 -6 587 253 32 47 chr13 77940445 77940722 -41804176 - L1ME1 LINE L1 -4 6231 5959 525 273 51 23 chr13 77940705 77940921 -41803977 - L1ME1 LINE L1 -874 5554 5333 * 445 234 0 0 chr13 77940922 77941033 -41803865 + L1P LINE L1 2770 2880 -3266 838 262 60 40 chr13 77941118 77941599 -41803299 - L1ME1 LINE L1 -4896 1500 1010 318 175 0 18 chr13 77941604 77941661 -41803237 + Tigger5 DNA MER2_type 1 56 -2267 364 208 14 14 chr13 77941711 77941783 -41803115 + Tigger5 DNA MER2_type 2252 2323 0 248 122 0 24 chr13 77941786 77941827 -41803071 + Tigger5 DNA MER2_type 16 55 -2268 * 306 214 45 71 chr13 77941819 77941849 -41803049 + Tigger5 DNA MER2_type 2215 2244 -79 2380 62 0 7 chr13 77941849 77942153 -41802745 - AluY SINE Alu -9 302 1 306 214 45 71 chr13 77942153 77942234 -41802664 + Tigger5 DNA MER2_type 2244 2323 0 3117 265 41 22 chr13 77942242 77943199 -41801699 - L1ME1 LINE L1 -5387 1009 35 263 275 72 0 chr13 77943208 77943435 -41801463 - L1ME LINE L1 -237 5884 5605 2221 164 105 12 chr13 77943435 77943862 -41801036 - MLT1C LTR MaLR 0 467 1 26 0 0 0 chr13 77943865 77943891 -41801007 + AT_rich Low_complexity Low_complexity 1 26 0 402 380 78 21 chr13 77944242 77944750 -41800148 - L2 LINE L2 -2 3270 2739 781 203 7 0 chr13 77944760 77944898 -41800000 + Tigger3(Golem) DNA MER2_type 3 141 -2888 1625 126 0 4 chr13 77944905 77945144 -41799754 + Tigger3(Golem) DNA MER2_type 2800 3037 0 720 344 95 50 chr13 77945182 77946193 -41798705 - L2 LINE L2 -649 2665 1609 36 104 0 0 chr13 77946341 77946475 -41798423 + AT_rich Low_complexity Low_complexity 1 134 0 240 193 0 36 chr13 77947050 77947133 -41797765 + CT-rich Low_complexity Low_complexity 3 82 0 4963 41 26 12 chr13 77948249 77948890 -41796008 + L1PA7 LINE L1 5504 6153 -1 2121 137 80 14 chr13 77949261 77949676 -41795222 + ERVL LTR ERVL 5290 5731 -33 384 22 0 0 chr13 77949918 77949963 -41794935 + (CA)n Simple_repeat Simple_repeat 2 46 0 254 336 84 0 chr13 77951371 77951478 -41793420 - MIR3 SINE MIR -3 205 90 221 0 35 0 chr13 77951579 77951608 -41793290 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 23 33 0 0 chr13 77952531 77952561 -41792337 + AT_rich Low_complexity Low_complexity 1 30 0 1190 190 19 0 chr13 77952884 77953095 -41791803 + Tigger3b DNA MER2_type 3 217 -1014 831 164 69 6 chr13 77953103 77953262 -41791636 - MER2 DNA MER2_type -1 344 176 2495 155 22 0 chr13 77953276 77953682 -41791216 - MSTA LTR MaLR -1 427 13 912 205 0 6 chr13 77953691 77953862 -41791036 - MER2 DNA MER2_type -165 180 11 5181 118 63 41 chr13 77953876 77954241 -41790657 + Tigger3b DNA MER2_type 238 594 -2434 2171 66 0 18 chr13 77954241 77954577 -41790321 + AluY SINE Alu 1 331 0 5181 118 63 41 chr13 77954577 77955181 -41789717 + Tigger3b DNA MER2_type 594 1231 0 2244 174 58 19 chr13 77955452 77955866 -41789032 - MLT2B2 LTR ERVL -85 430 1 447 245 118 59 chr13 77956419 77956623 -41788275 + MLT1L LTR MaLR 1 216 -399 524 233 21 69 chr13 77957353 77957621 -41787277 - MSTC LTR MaLR -144 252 1 343 276 35 81 chr13 77958298 77958559 -41786339 - L1M4 LINE L1 -1448 4698 4450 5359 184 38 55 chr13 77959366 77960321 -41784577 + L1 LINE L1 4022 4949 -1197 5519 22 0 0 chr13 77960321 77960962 -41783936 + L1PA2 LINE L1 5515 6155 0 5359 184 38 55 chr13 77960962 77961339 -41783559 + L1 LINE L1 4949 5331 -815 583 51 25 0 chr13 77961337 77961416 -41783482 + L1P4 LINE L1 5466 5546 -617 * 530 170 0 65 chr13 77961411 77961534 -41783364 + L1PB4 LINE L1 6035 6150 -4 * 255 250 0 0 chr13 77961719 77961783 -41783115 - LTR33A LTR ERVL -20 503 440 1783 133 26 7 chr13 77962403 77962523 -41782375 + AluSx SINE Alu 5 121 -191 387 0 0 0 chr13 77962523 77962566 -41782332 + (CA)n Simple_repeat Simple_repeat 2 44 0 1783 133 26 7 chr13 77962566 77962716 -41782182 + AluSx SINE Alu 121 280 -32 325 138 31 15 chr13 77962722 77962787 -41782111 + G-rich Low_complexity Low_complexity 4 69 0 22 56 0 0 chr13 77963623 77963659 -41781239 + AT_rich Low_complexity Low_complexity 1 36 0 2410 221 86 42 chr13 77963925 77964840 -41780058 + L1ME1 LINE L1 5127 6090 -76 237 170 0 38 chr13 77964825 77964878 -41780020 + L1MC4 LINE L1 6653 6703 -1339 * 27 0 0 0 chr13 77964913 77964940 -41779958 + AT_rich Low_complexity Low_complexity 1 27 0 1593 253 120 11 chr13 77965030 77965505 -41779393 - MLT1F LTR MaLR 0 542 16 21 57 0 0 chr13 77966401 77966436 -41778462 + AT_rich Low_complexity Low_complexity 1 35 0 2067 156 31 19 chr13 77967366 77967726 -41777172 + THE1B LTR MaLR 1 364 0 12421 169 24 30 chr13 77967807 77968835 -41776063 + L1MA4 LINE L1 2646 3678 -2622 197 33 33 0 chr13 77968835 77968865 -41776033 + (CAA)n Simple_repeat Simple_repeat 3 33 0 12421 169 24 30 chr13 77968865 77971494 -41773404 + L1MA4 LINE L1 3678 6299 -1 381 357 36 15 chr13 77972134 77972330 -41772568 + L3b LINE CR1 1200 1399 -184 293 183 0 14 chr13 77972398 77972469 -41772429 + GA-rich Low_complexity Low_complexity 2 71 0 311 270 63 92 chr13 77973124 77973569 -41771329 + HAL1 LINE L1 91 522 -1985 2403 77 0 0 chr13 77973769 77974080 -41770818 + AluY SINE Alu 1 311 0 1943 148 6 29 chr13 77974101 77974412 -41770486 + AluSx SINE Alu 4 307 -5 234 283 112 16 chr13 77974470 77974721 -41770177 + HAL1 LINE L1 913 1187 -1320 480 16 0 0 chr13 77975897 77975959 -41768939 - L1PA2 LINE L1 0 6155 6094 25 65 0 0 chr13 77976055 77976101 -41768797 + AT_rich Low_complexity Low_complexity 1 46 0 286 239 23 23 chr13 77976888 77976976 -41767922 + L1ME LINE L1 5727 5814 -307 21 36 0 0 chr13 77977264 77977292 -41767606 + AT_rich Low_complexity Low_complexity 1 28 0 207 100 0 0 chr13 77977636 77977666 -41767232 + (GA)n Simple_repeat Simple_repeat 2 31 0 279 278 14 14 chr13 77978414 77978486 -41766412 - MER5A DNA MER1_type 0 189 118 196 301 92 37 chr13 77980223 77980386 -41764512 + MIR3 SINE MIR 20 191 -17 293 306 113 6 chr13 77980579 77980739 -41764159 - MIR SINE MIR 0 262 86 2570 117 6 0 chr13 77981174 77981534 -41763364 + THE1B LTR MaLR 1 362 -2 2123 165 84 0 chr13 77981590 77981983 -41762915 + MSTB LTR MaLR 1 426 0 338 231 111 37 chr13 77982414 77982522 -41762376 - L2 LINE L2 -2 3311 3196 192 369 15 0 chr13 77983055 77983120 -41761778 + L2 LINE L2 3182 3247 -25 571 268 80 26 chr13 77984001 77984340 -41760558 - L1MC5 LINE L1 -214 7747 7391 21 0 0 0 chr13 77984893 77984914 -41759984 + AT_rich Low_complexity Low_complexity 1 21 0 1999 122 3 26 chr13 77986364 77986668 -41758230 - AluSx SINE Alu -15 297 1 21 57 0 0 chr13 77986782 77986817 -41758081 + AT_rich Low_complexity Low_complexity 1 35 0 229 340 154 6 chr13 77987417 77987579 -41757319 - MIR3 SINE MIR -1 207 22 431 363 60 4 chr13 77988205 77988453 -41756445 + L2 LINE L2 2526 2787 -527 2143 113 3 16 chr13 77988722 77989032 -41755866 - AluSx SINE Alu -3 309 4 2502 151 78 11 chr13 77989513 77989977 -41754921 + LOR1a LTR ERV1 3 497 0 23 0 0 0 chr13 77991237 77991260 -41753638 + AT_rich Low_complexity Low_complexity 1 23 0 243 261 15 15 chr13 77992211 77992276 -41752622 + L2 LINE L2 3245 3309 -4 1756 210 34 68 chr13 77994092 77994620 -41750278 - MER67D LTR ERV1 -4 510 1 828 59 0 34 chr13 77994783 77994901 -41749997 - L1PA7 LINE L1 0 6154 6041 191 86 0 29 chr13 77994901 77994936 -41749962 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1562 209 23 43 chr13 77994956 77995354 -41749544 - MLT1B LTR MaLR 0 390 1 581 273 43 60 chr13 77995538 77995937 -41748961 - L1M4 LINE L1 -867 5279 4888 322 272 12 0 chr13 77996148 77996229 -41748669 + L1ME LINE L1 5556 5637 -527 528 296 31 15 chr13 77996334 77996594 -41748304 - L1M4 LINE L1 -1388 4758 4495 285 182 0 0 chr13 77996626 77996681 -41748217 + (TA)n Simple_repeat Simple_repeat 1 55 0 315 296 23 0 chr13 77996682 77996770 -41748128 + L1MC4 LINE L1 6614 6703 -1339 312 260 0 62 chr13 77996728 77996824 -41748074 - L1MC4 LINE L1 -1339 6703 6614 * 221 261 0 0 chr13 77996824 77996870 -41748028 + (CATATA)n Simple_repeat Simple_repeat 4 49 0 247 283 0 22 chr13 77996870 77996962 -41747936 - L1MC4 LINE L1 -1339 6703 6614 251 73 49 0 chr13 77996965 77997006 -41747892 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 231 245 0 82 chr13 77997010 77997108 -41747790 - L1MC4 LINE L1 -1339 6703 6614 408 309 0 0 chr13 77997119 77997281 -41747617 + (CATA)n Simple_repeat Simple_repeat 3 164 0 242 333 0 0 chr13 77997288 77997378 -41747520 - L1MC4 LINE L1 -1339 6703 6614 203 218 18 0 chr13 77997384 77997439 -41747459 + (TA)n Simple_repeat Simple_repeat 2 57 0 267 233 47 0 chr13 77997443 77997529 -41747369 - L1MC4 LINE L1 -1339 6703 6614 322 276 23 0 chr13 77997536 77997623 -41747275 + L1MC4 LINE L1 6615 6703 -1339 27 0 0 0 chr13 77997671 77997698 -41747200 + AT_rich Low_complexity Low_complexity 1 27 0 302 236 54 61 chr13 77997853 77998001 -41746897 - L1M2 LINE L1 -3968 2881 2735 1510 261 89 13 chr13 77998274 77998734 -41746164 + MLT1F LTR MaLR 48 542 0 373 339 29 14 chr13 77999106 77999383 -41745515 - L1MEd LINE L1 -4932 1187 907 24 0 0 0 chr13 77999558 77999582 -41745316 + AT_rich Low_complexity Low_complexity 1 24 0 882 280 61 39 chr13 77999977 78000394 -41744504 - L1MEd LINE L1 -3143 2986 2580 2015 98 4 0 chr13 78000394 78000659 -41744239 - AluSx SINE Alu -45 267 2 882 280 61 39 chr13 78000659 78000810 -41744088 - L1MEd LINE L1 -3549 2580 2400 1196 212 31 99 chr13 78000810 78001202 -41743696 - MLT1A1 LTR MaLR 0 365 1 882 280 61 39 chr13 78001202 78001256 -41743642 - L1MEd LINE L1 -3729 2400 2349 302 181 30 23 chr13 78001391 78001524 -41743374 + (CA)n Simple_repeat Simple_repeat 1 134 0 15022 133 16 12 chr13 78001671 78004075 -41740823 + Tigger1 DNA MER2_type 6 2417 -1 376 296 136 37 chr13 78004075 78004318 -41740580 - L1MEd LINE L1 -5291 828 562 1283 150 4 9 chr13 78004744 78004971 -41739927 - Tigger5 DNA MER2_type -13 2310 2085 1165 240 9 0 chr13 78004969 78005202 -41739696 - Tigger5 DNA MER2_type -2088 235 1 * 207 0 0 0 chr13 78005675 78005698 -41739200 + (T)n Simple_repeat Simple_repeat 1 23 0 2594 96 31 6 chr13 78006918 78007273 -41737625 + THE1B LTR MaLR 1 364 0 352 364 77 0 chr13 78007526 78007669 -41737229 - L2 LINE L2 -1 3271 3118 1931 263 63 20 chr13 78007669 78008335 -41736563 + L1MDb LINE L1 9 816 -5593 2705 224 45 6 chr13 78008356 78008993 -41735905 + L1MB8 LINE L1 5478 6139 -39 1449 193 90 3 chr13 78008980 78009301 -41735597 + L1MDb LINE L1 804 1152 -5257 * 2110 114 0 14 chr13 78009342 78009631 -41735267 + AluSg SINE Alu 3 287 -23 602 96 64 0 chr13 78009631 78009788 -41735110 + (TA)n Simple_repeat Simple_repeat 1 167 0 25 0 0 0 chr13 78009903 78009928 -41734970 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 78010092 78010121 -41734777 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 78011302 78011325 -41733573 + AT_rich Low_complexity Low_complexity 1 23 0 259 239 131 31 chr13 78011632 78011762 -41733136 - L1MC/D LINE L1 -2048 5760 5618 265 198 34 34 chr13 78011894 78011995 -41732903 - L1MC/D LINE L1 -775 5405 5318 2039 112 3 7 chr13 78012361 78012647 -41732251 - AluSx SINE Alu -15 297 13 461 283 130 32 chr13 78012807 78013214 -41731684 - L1MC/D LINE L1 -1310 4836 4390 240 304 43 68 chr13 78013772 78013979 -41730919 - L2 LINE L2 -337 2977 2776 199 304 0 0 chr13 78014154 78014210 -41730688 + L2 LINE L2 3216 3271 -1 188 306 0 16 chr13 78014400 78014462 -41730436 + MIR SINE MIR 181 241 -21 550 323 221 17 chr13 78014713 78015301 -41729597 - L2 LINE L2 -384 2930 2223 305 227 64 50 chr13 78015607 78015748 -41729150 + LTR16C LTR ERVL 340 482 -9 481 298 169 14 chr13 78015754 78016049 -41728849 - L2 LINE L2 -1078 2236 1896 604 307 66 9 chr13 78017026 78017238 -41727660 - MIR SINE MIR -21 241 18 1869 153 31 22 chr13 78018087 78018447 -41726451 + MLT1A1 LTR MaLR 1 363 -2 414 257 29 9 chr13 78019853 78019958 -41724940 - MIR SINE MIR -48 214 108 180 325 0 39 chr13 78020042 78020119 -41724779 - MIR SINE MIR -177 85 12 290 308 10 39 chr13 78020766 78020870 -41724028 - L2 LINE L2 -5 3308 3208 1837 175 143 111 chr13 78020897 78021330 -41723568 - MLT1E1 LTR MaLR -8 646 88 257 226 88 78 chr13 78021330 78021432 -41723466 - MLT2C1 LTR ERVL -216 181 79 1837 175 143 111 chr13 78021432 78021520 -41723378 - MLT1E1 LTR MaLR -566 88 4 363 313 194 5 chr13 78021527 78021744 -41723154 - L2 LINE L2 -569 2745 2488 404 355 106 33 chr13 78021888 78022311 -41722587 + L2 LINE L2 2818 3271 -1 2461 122 2 28 chr13 78022624 78023017 -41721881 + L1PA14 LINE L1 5779 6161 0 1222 227 59 68 chr13 78023747 78024205 -41720693 - MER110A LTR ERV1 -4 464 11 2370 86 0 13 chr13 78024470 78024784 -41720114 - AluSg SINE Alu 0 310 1 773 199 112 0 chr13 78026199 78026360 -41718538 + L1MDa LINE L1 19 197 -6343 413 292 45 10 chr13 78026358 78026560 -41718338 - L1ME LINE L1 -324 5797 5589 * 2611 146 15 68 chr13 78026992 78027534 -41717364 + L1PA16 LINE L1 5647 6159 -7 21 0 0 0 chr13 78027534 78027555 -41717343 + AT_rich Low_complexity Low_complexity 1 21 0 1604 154 96 0 chr13 78027585 78027880 -41717018 - AluSx SINE Alu 0 320 1 450 263 104 70 chr13 78027914 78028332 -41716566 - L1 LINE L1 -2877 3269 2837 576 42 0 0 chr13 78028612 78028683 -41716215 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 364 276 71 53 chr13 78028799 78028969 -41715929 + MIR SINE MIR 32 204 -58 22 35 0 0 chr13 78028996 78029025 -41715873 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr13 78029261 78029284 -41715614 + (T)n Simple_repeat Simple_repeat 1 23 0 2151 113 0 13 chr13 78029996 78030298 -41714600 + AluSq SINE Alu 1 298 -15 1750 141 36 11 chr13 78030511 78030787 -41714111 - AluJb SINE Alu 0 312 30 291 265 92 10 chr13 78031104 78031202 -41713696 + L2 LINE L2 3207 3312 -1 225 0 0 0 chr13 78031203 78031228 -41713670 + (TGGA)n Simple_repeat Simple_repeat 2 26 0 237 384 76 25 chr13 78031351 78031549 -41713349 - L2 LINE L2 -400 2914 2707 2288 95 7 0 chr13 78031682 78031978 -41712920 + AluSp SINE Alu 1 298 -15 840 240 32 32 chr13 78032025 78032242 -41712656 + MIR SINE MIR 3 219 -43 32 0 0 0 chr13 78035113 78035145 -41709753 + AT_rich Low_complexity Low_complexity 1 32 0 959 172 116 0 chr13 78035472 78035705 -41709193 - L1MA9 LINE L1 -38 6274 6015 225 294 168 0 chr13 78035711 78035830 -41709068 + MIR SINE MIR 124 262 0 1395 215 110 80 chr13 78036148 78036659 -41708239 + MER51C LTR ERV1 115 640 0 340 294 118 36 chr13 78037539 78037760 -41707138 + L1M4 LINE L1 2709 2947 -3199 2480 56 7 0 chr13 78038203 78038505 -41706393 + AluY SINE Alu 1 304 -7 2398 145 41 5 chr13 78038519 78038953 -41705945 - MER61C LTR ERV1 0 434 1 349 159 14 29 chr13 78041468 78041537 -41703361 + Tigger2 DNA MER2_type 1 68 -2650 1754 104 15 8 chr13 78041537 78041805 -41703093 + L1PB2 LINE L1 5874 6143 -8 1997 92 10 56 chr13 78041819 78042124 -41702774 + AluSq SINE Alu 5 295 -18 2185 158 48 46 chr13 78042143 78042579 -41702319 + Tigger2 DNA MER2_type 2282 2718 0 2247 148 36 64 chr13 78043121 78043561 -41701337 - MSTC LTR MaLR 0 428 1 304 239 22 67 chr13 78044525 78044659 -41700239 - MER117 DNA MER1_type -69 128 1 675 312 94 4 chr13 78045212 78045446 -41699452 + MIR SINE MIR 8 262 0 528 314 29 58 chr13 78047820 78048047 -41696851 - HAL1 LINE L1 -2163 344 127 1731 186 41 76 chr13 78048047 78048097 -41696801 - MLT1C LTR MaLR 0 467 417 2306 112 0 3 chr13 78048097 78048411 -41696487 - AluSq SINE Alu 0 313 1 1731 186 41 76 chr13 78048411 78048844 -41696054 - MLT1C LTR MaLR -50 417 1 528 314 29 58 chr13 78048844 78048928 -41695970 - HAL1 LINE L1 -2380 127 42 1903 169 3 0 chr13 78049018 78049319 -41695579 - AluJb SINE Alu -10 302 1 12937 118 8 7 chr13 78050118 78052406 -41692492 + L1P4 LINE L1 3372 5654 -514 710 288 5 21 chr13 78052774 78052965 -41691933 - MER5A DNA MER1_type -1 188 1 2706 67 0 0 chr13 78053450 78053791 -41691107 + L1PA6 LINE L1 5805 6145 -9 201 39 0 0 chr13 78055338 78055364 -41689534 + (CA)n Simple_repeat Simple_repeat 1 26 0 1581 234 112 7 chr13 78056126 78056745 -41688153 + L1ME1 LINE L1 4074 4757 -1389 1459 218 78 24 chr13 78056771 78056802 -41688096 + L1ME1 LINE L1 4805 4833 -1313 207 0 0 0 chr13 78056802 78056825 -41688073 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 1459 218 78 24 chr13 78056825 78057233 -41687665 + L1ME1 LINE L1 4833 5273 -873 180 0 0 0 chr13 78057233 78057253 -41687645 + (TA)n Simple_repeat Simple_repeat 2 21 0 1459 218 78 24 chr13 78057253 78057276 -41687622 + L1ME1 LINE L1 5273 5293 -853 2852 228 36 47 chr13 78057379 78058236 -41686662 + L1ME1 LINE L1 5315 6162 -4 454 292 20 62 chr13 78059362 78059557 -41685341 + MER91B DNA MER1_type 1 187 -3 1127 248 30 27 chr13 78059607 78059902 -41684996 + L1M4b LINE L1 11 306 -6553 5408 237 60 20 chr13 78060082 78061511 -41683387 + L1M4b LINE L1 310 1760 -5095 306 104 125 0 chr13 78061589 78061637 -41683261 + AluJb SINE Alu 13 66 -236 207 0 0 0 chr13 78061637 78061660 -41683238 + (T)n Simple_repeat Simple_repeat 1 23 0 20146 26 0 0 chr13 78061664 78064829 -41680069 - L1PA2 LINE L1 -1 6154 2990 1502 157 21 0 chr13 78064830 78065066 -41679832 + AluJb SINE Alu 49 289 -23 183 303 91 15 chr13 78065820 78065886 -41679012 - L2 LINE L2 -4 3309 3239 359 339 31 23 chr13 78065913 78066043 -41678855 - L2 LINE L2 0 3272 3142 2193 158 43 37 chr13 78066062 78066524 -41678374 + L1MA8 LINE L1 5815 6279 -12 2137 119 13 13 chr13 78066547 78066859 -41678039 + AluSx SINE Alu 1 312 0 2355 77 3 7 chr13 78067039 78067336 -41677562 + AluSq SINE Alu 1 296 -17 1156 132 12 165 chr13 78067336 78067670 -41677228 + L1MA9 LINE L1 6024 6306 -6 327 260 192 0 chr13 78067937 78068083 -41676815 - MIR SINE MIR 0 262 89 21 57 0 0 chr13 78068163 78068198 -41676700 + AT_rich Low_complexity Low_complexity 1 35 0 3305 108 36 0 chr13 78068641 78069134 -41675764 + MER75 DNA T2_type 1 511 -3 37 62 0 0 chr13 78069358 78069423 -41675475 + AT_rich Low_complexity Low_complexity 1 65 0 1820 116 49 11 chr13 78069972 78070257 -41674641 + AluSx SINE Alu 1 296 -16 193 280 20 0 chr13 78070257 78070307 -41674591 - L3 LINE CR1 -7 1570 1520 1992 123 0 14 chr13 78071164 78071448 -41673450 + AluSx SINE Alu 29 308 -4 841 225 143 14 chr13 78071648 78071928 -41672970 - L2 LINE L2 -11 3302 2987 222 297 63 18 chr13 78071949 78072060 -41672838 + L2 LINE L2 3183 3298 -15 182 294 206 0 chr13 78072470 78072572 -41672326 - L2 LINE L2 -1 3312 3190 2269 108 0 3 chr13 78074660 78074966 -41669932 + AluSg SINE Alu 1 305 -5 185 254 236 9 chr13 78075100 78075210 -41669688 + MIR SINE MIR 83 217 -45 968 216 15 9 chr13 78075361 78075647 -41669251 - MER2 DNA MER2_type -5 340 2 1573 180 42 3 chr13 78076416 78076570 -41668328 - AluJb SINE Alu -18 294 123 387 0 0 0 chr13 78076570 78076613 -41668285 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1573 180 42 3 chr13 78076613 78076741 -41668157 - AluJb SINE Alu -189 123 1 2065 115 18 0 chr13 78077747 78078033 -41666865 - AluSg SINE Alu -19 291 1 382 299 172 6 chr13 78079253 78079427 -41665471 - MIR SINE MIR -8 254 52 511 285 13 32 chr13 78079636 78079794 -41665104 - MLT1H LTR MaLR -20 529 375 440 273 167 7 chr13 78080235 78080385 -41664513 + MER5A DNA MER1_type 10 183 -6 237 295 134 9 chr13 78080986 78081098 -41663800 + L2 LINE L2 3146 3271 -1 4440 153 35 23 chr13 78082127 78083318 -41661580 + L1MB1 LINE L1 4871 6071 -97 1821 138 72 0 chr13 78083330 78083621 -41661277 + AluSx SINE Alu 1 312 0 21 0 0 0 chr13 78083621 78083642 -41661256 + AT_rich Low_complexity Low_complexity 1 21 0 1010 282 97 28 chr13 78084002 78084754 -41660144 + L1MEc LINE L1 1260 2063 -4333 1732 274 58 12 chr13 78084896 78085867 -41659031 + L1ME2 LINE L1 399 1302 -4915 * 2245 221 133 34 chr13 78085858 78086871 -41658027 + L1ME2 LINE L1 5112 6214 -19 221 234 125 70 chr13 78086887 78087015 -41657883 - MIR SINE MIR -41 221 87 424 252 14 50 chr13 78087977 78088116 -41656782 - MER5B DNA MER1_type 0 178 45 1330 192 69 67 chr13 78088127 78088608 -41656290 + LTR36 LTR ERV1 63 603 -8 208 220 0 20 chr13 78088651 78088701 -41656197 - MER5B DNA MER1_type -129 49 1 353 304 92 26 chr13 78089156 78089429 -41655469 + L1ME LINE L1 5400 5690 -431 2244 116 3 0 chr13 78089694 78090005 -41654893 - AluSx SINE Alu 0 312 1 225 188 16 0 chr13 78090161 78090225 -41654673 + L1ME4a LINE L1 6052 6116 -5 402 240 10 10 chr13 78091757 78091853 -41653045 - MLT1H1 LTR MaLR -10 545 450 4527 64 20 2 chr13 78091901 78092908 -41651990 + MER11A LTR ERVK 1 1266 0 755 197 41 1 chr13 78092913 78093171 -41651727 + L1ME LINE L1 5204 5479 -699 583 206 54 72 chr13 78093159 78093400 -41651498 + L1MA10 LINE L1 5948 6333 -1 * 445 297 77 39 chr13 78093440 78093622 -41651276 - MIR3 SINE MIR -2 206 18 1551 273 31 27 chr13 78093741 78094150 -41650748 + L1ME LINE L1 238 651 -5419 2289 189 19 2 chr13 78094150 78094569 -41650329 + MSTB LTR MaLR 1 426 0 1551 273 31 27 chr13 78094569 78094679 -41650219 + L1ME LINE L1 651 759 -5311 2174 112 10 6 chr13 78094696 78095008 -41649890 - AluSq SINE Alu 0 313 1 241 301 124 18 chr13 78095733 78095846 -41649052 - L2 LINE L2 0 3313 3189 3344 44 0 0 chr13 78097611 78098020 -41646878 - L1PA3 LINE L1 -1083 5063 4655 7537 29 0 0 chr13 78098020 78099111 -41645787 + L1PA3 LINE L1 5069 6159 0 1879 212 40 36 chr13 78099205 78099705 -41645193 + MLT1D LTR MaLR 1 502 -3 1798 154 29 0 chr13 78099917 78100196 -41644702 + AluSx SINE Alu 1 287 -25 647 157 8 8 chr13 78100739 78100873 -41644025 - Charlie1 DNA MER1_type -6 2755 2622 * 650 254 58 5 chr13 78100857 78101046 -41643852 - Charlie1 DNA MER1_type -2521 240 42 306 291 50 78 chr13 78101724 78101903 -41642995 + L1M4 LINE L1 3766 3939 -2207 844 173 0 0 chr13 78101911 78102038 -41642860 - FLAM_C SINE Alu -16 127 1 297 240 131 44 chr13 78102464 78102647 -41642251 + MLT1L LTR MaLR 374 572 -43 381 272 22 0 chr13 78102927 78103019 -41641879 + MIR SINE MIR 72 165 -97 419 346 35 17 chr13 78103055 78103344 -41641554 - L1MC/D LINE L1 -2007 5801 5508 1790 152 4 4 chr13 78103344 78103613 -41641285 + AluSx SINE Alu 7 275 -37 342 0 0 0 chr13 78103617 78103655 -41641243 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 482 333 9 14 chr13 78103737 78103947 -41640951 + L1ME LINE L1 5485 5693 -428 228 274 12 12 chr13 78104142 78104226 -41640672 + (TA)n Simple_repeat Simple_repeat 1 84 0 607 275 46 9 chr13 78104873 78105098 -41639800 + MIR SINE MIR 3 236 -26 681 320 144 39 chr13 78105196 78105812 -41639086 - L2 LINE L2 -393 2921 2241 351 275 89 85 chr13 78105813 78106060 -41638838 - L2 LINE L2 -1340 1974 1727 405 353 6 6 chr13 78106258 78106425 -41638473 - HERV16 LTR ERVL -2207 2789 2623 326 261 32 76 chr13 78106541 78106698 -41638200 - HERV16 LTR ERVL -2507 2489 2340 1579 298 55 22 chr13 78106763 78107344 -41637554 - HERV16 LTR ERVL -2757 2239 1640 2156 114 0 0 chr13 78107427 78107754 -41637144 - AluSx SINE Alu 0 331 5 1625 249 89 26 chr13 78107768 78108309 -41636589 + L1ME1 LINE L1 5583 6157 -9 27 29 0 0 chr13 78109448 78109482 -41635416 + AT_rich Low_complexity Low_complexity 1 34 0 284 310 42 35 chr13 78110575 78110717 -41634181 - L2 LINE L2 -6 3307 3165 2120 141 8 44 chr13 78110719 78110972 -41633926 - MER6 DNA MER2_type 0 865 629 1176 167 5 0 chr13 78110972 78111170 -41633728 - L1PA15 LINE L1 -4 6161 5963 2120 141 8 44 chr13 78111170 78111305 -41633593 - MER6 DNA MER2_type -236 629 491 6832 55 18 0 chr13 78111305 78112804 -41632094 + L1PA7 LINE L1 4632 6147 -7 622 283 7 7 chr13 78114840 78114992 -41629906 - MIR SINE MIR -89 173 22 372 130 0 0 chr13 78116637 78116706 -41628192 + (TG)n Simple_repeat Simple_repeat 2 70 0 1447 199 156 22 chr13 78117406 78117809 -41627089 + MLT1C LTR MaLR 11 467 0 2257 107 0 0 chr13 78118313 78118612 -41626286 + AluSg SINE Alu 1 299 -11 766 233 106 0 chr13 78118743 78118932 -41625966 + MER58A DNA MER1_type 1 209 -15 10176 45 9 3 chr13 78121504 78123546 -41621352 + L1PA5 LINE L1 4102 6147 -7 431 269 47 57 chr13 78123941 78124153 -41620745 - MER63A DNA MER1_type 0 210 1 408 20 0 0 chr13 78124899 78124948 -41619950 + (TG)n Simple_repeat Simple_repeat 2 50 0 311 281 0 56 chr13 78125346 78125435 -41619463 - MIR SINE MIR -150 112 29 1158 230 167 21 chr13 78125679 78126105 -41618793 - MLT1D LTR MaLR 0 505 18 2184 107 59 31 chr13 78126107 78126461 -41618437 - THE1B LTR MaLR 0 364 1 285 348 34 39 chr13 78126731 78126935 -41617963 + MER115 DNA AcHobo 2 204 -489 310 250 84 64 chr13 78127333 78127408 -41617490 + L1ME4a LINE L1 5582 5654 -467 3712 111 37 4 chr13 78127408 78127969 -41616929 - LTR19B LTR ERV1 0 580 1 310 250 84 64 chr13 78127969 78128189 -41616709 + L1ME4a LINE L1 5654 5883 -238 35 0 0 0 chr13 78128299 78128334 -41616564 + AT_rich Low_complexity Low_complexity 1 35 0 696 255 131 16 chr13 78128406 78128720 -41616178 + HAL1 LINE L1 6 355 -2152 1904 127 4 4 chr13 78128749 78129062 -41615836 + AluSx SINE Alu 6 318 0 237 284 69 10 chr13 78129107 78129209 -41615689 + HAL1 LINE L1 445 552 -1955 41136 31 22 1 chr13 78129419 78135447 -41609451 - L1HS LINE L1 0 6155 1 424 249 31 72 chr13 78135448 78135769 -41609129 + HAL1 LINE L1 811 1118 -1389 281 276 69 55 chr13 78137898 78138043 -41606855 + MIR3 SINE MIR 1 147 -61 2099 171 25 15 chr13 78138212 78138604 -41606294 - MSTD LTR MaLR 0 396 1 548 350 17 17 chr13 78139457 78139637 -41605261 + MIR3 SINE MIR 17 196 -12 197 239 7 35 chr13 78140073 78140215 -41604683 + CT-rich Low_complexity Low_complexity 2 139 0 452 307 41 7 chr13 78141519 78141789 -41603109 - L1ME LINE L1 -302 5819 5541 1894 199 37 79 chr13 78142177 78142685 -41602213 - MLT1D LTR MaLR -16 489 3 294 368 85 24 chr13 78143037 78143412 -41601486 + L2 LINE L2 2578 2975 -339 286 270 27 36 chr13 78144101 78144212 -41600686 - LTR67 LTR ERVL -356 201 92 182 276 92 26 chr13 78144364 78144440 -41600458 + L2 LINE L2 3136 3216 -56 3992 107 2 19 chr13 78144598 78145226 -41599672 + L1PA8 LINE L1 5516 6132 -40 228 182 0 0 chr13 78145226 78145270 -41599628 + A-rich Low_complexity Low_complexity 1 44 0 262 149 85 0 chr13 78145328 78145375 -41599523 + MIR SINE MIR 82 132 -76 2352 85 3 0 chr13 78145417 78145722 -41599176 + AluY SINE Alu 1 306 -5 234 0 0 0 chr13 78146080 78146106 -41598792 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1410 190 42 11 chr13 78146421 78146684 -41598214 - AluJb SINE Alu -11 301 31 180 111 0 0 chr13 78147561 78147588 -41597310 + (A)n Simple_repeat Simple_repeat 1 27 0 396 306 61 40 chr13 78148276 78148708 -41596190 + MLT1L LTR MaLR 159 615 0 282 215 31 0 chr13 78151096 78151161 -41593737 - L2 LINE L2 0 3272 3206 440 280 77 43 chr13 78151263 78151470 -41593428 + MIR SINE MIR 9 222 -40 528 344 16 10 chr13 78151947 78152139 -41592759 - MIR SINE MIR -42 220 28 1876 118 66 3 chr13 78153586 78153891 -41591007 - L1MC1 LINE L1 -9 6324 6001 22 0 0 0 chr13 78154761 78154783 -41590115 + AT_rich Low_complexity Low_complexity 1 22 0 763 269 14 14 chr13 78156706 78156914 -41587984 + MIR SINE MIR 23 230 -32 2264 113 0 0 chr13 78159914 78160205 -41584693 - AluSg SINE Alu -19 291 1 362 321 105 21 chr13 78161261 78161451 -41583447 + MIR3 SINE MIR 2 207 -1 501 138 18 9 chr13 78161452 78161561 -41583337 + (TA)n Simple_repeat Simple_repeat 2 111 0 1720 215 117 13 chr13 78163020 78163480 -41581418 - MLT1E2 LTR MaLR -8 618 111 1957 184 29 62 chr13 78163492 78163975 -41580923 + MLT1C LTR MaLR 1 467 0 193 179 0 26 chr13 78164059 78164098 -41580800 - MER5A DNA MER1_type -125 64 27 2317 75 7 0 chr13 78165286 78165578 -41579320 + AluY SINE Alu 1 294 -17 1437 203 126 7 chr13 78165583 78166027 -41578871 + L1MCa LINE L1 816 1312 -5114 529 235 89 9 chr13 78166098 78166380 -41578518 - L1MC/D LINE L1 -608 5563 5242 362 313 57 17 chr13 78166526 78166702 -41578196 - L1MEd LINE L1 -5934 185 3 2171 99 7 0 chr13 78166892 78167175 -41577723 - AluSc SINE Alu -24 285 1 712 284 43 120 chr13 78167288 78167579 -41577319 - L2 LINE L2 -3 3310 2998 1983 135 7 0 chr13 78167579 78167861 -41577037 + AluSx SINE Alu 5 288 -24 712 284 43 120 chr13 78167861 78168264 -41576634 - L2 LINE L2 -315 2998 2654 1437 208 31 21 chr13 78168294 78168643 -41576255 - L1P LINE L1 -3018 3128 2773 2198 102 27 0 chr13 78168643 78168817 -41576081 - AluSp SINE Alu -11 302 115 198 0 0 0 chr13 78168817 78168839 -41576059 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2198 102 27 0 chr13 78168839 78168958 -41575940 - AluSp SINE Alu -198 115 1 1437 208 31 21 chr13 78168958 78169027 -41575871 - L1P LINE L1 -3373 2773 2706 2354 87 16 0 chr13 78169031 78169352 -41575546 + L1PA8A LINE L1 5806 6131 0 * 5323 131 14 22 chr13 78169347 78170221 -41574677 + L1PA15 LINE L1 4922 5775 -390 2111 123 0 0 chr13 78170221 78170513 -41574385 + AluSx SINE Alu 1 292 -20 5323 131 14 22 chr13 78170513 78170898 -41574000 + L1PA15 LINE L1 5775 6161 -4 234 285 113 78 chr13 78170914 78171170 -41573728 - LTR33A LTR ERVL -46 477 213 259 261 101 0 chr13 78171196 78171265 -41573633 - LTR33A LTR ERVL -393 130 55 1296 310 55 39 chr13 78171314 78171439 -41573459 - L2 LINE L2 -654 2660 2538 2146 149 0 0 chr13 78171439 78171748 -41573150 - AluSx SINE Alu -3 309 1 1296 310 55 39 chr13 78171748 78172183 -41572715 - L2 LINE L2 -776 2538 2091 406 313 82 26 chr13 78172190 78172385 -41572513 - L2 LINE L2 -1379 1935 1730 704 285 6 6 chr13 78173179 78173358 -41571540 - MIR3 SINE MIR -6 202 24 965 181 124 27 chr13 78174299 78174427 -41570471 + L1ME1 LINE L1 4716 4830 -1316 183 114 0 0 chr13 78174427 78174462 -41570436 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 965 181 124 27 chr13 78174462 78174592 -41570306 + L1ME1 LINE L1 4830 4999 -1147 735 152 194 12 chr13 78174600 78174765 -41570133 + MSTA LTR MaLR 1 195 -233 2488 62 7 0 chr13 78174765 78175069 -41569829 + AluY SINE Alu 1 306 -5 1469 249 24 15 chr13 78175077 78175487 -41569411 + L1ME1 LINE L1 5686 6099 -67 1942 133 13 10 chr13 78175635 78175935 -41568963 - AluSx SINE Alu -11 301 1 229 227 152 0 chr13 78175935 78176001 -41568897 - L2 LINE L2 -599 2715 2640 262 271 161 36 chr13 78176063 78176255 -41568643 + L1ME LINE L1 4611 4826 -1320 421 251 93 64 chr13 78176261 78176496 -41568402 + L1ME LINE L1 4886 5113 -1057 2423 94 3 0 chr13 78176496 78176805 -41568093 + AluSx SINE Alu 1 310 -2 421 251 93 64 chr13 78176805 78177142 -41567756 + L1ME LINE L1 5113 5480 -690 29 28 0 0 chr13 78177169 78177205 -41567693 + AT_rich Low_complexity Low_complexity 1 36 0 2135 129 0 0 chr13 78177297 78177591 -41567307 + AluSg SINE Alu 1 294 -16 2069 142 45 11 chr13 78177723 78178082 -41566816 + L1PA16 LINE L1 5792 6162 -4 511 167 0 0 chr13 78178123 78178207 -41566691 + MER34 LTR ERV1 380 463 -79 581 284 132 40 chr13 78178300 78179149 -41565749 + L1MC/D LINE L1 4737 5654 -743 283 141 0 42 chr13 78179299 78179370 -41565528 + (GGAAA)n Simple_repeat Simple_repeat 3 70 0 215 382 122 0 chr13 78180929 78181052 -41563846 - MIR3 SINE MIR 0 208 71 243 172 52 0 chr13 78182079 78182137 -41562761 + LTR31 LTR ERV1 19 79 -540 1227 164 48 5 chr13 78183725 78184117 -41560781 - LOR1a LTR ERV1 -17 480 2 250 128 0 0 chr13 78185265 78185304 -41559594 + MIR3 SINE MIR 159 197 -11 523 266 89 12 chr13 78185844 78186013 -41558885 - MIR SINE MIR -34 228 47 195 42 0 0 chr13 78186094 78186118 -41558780 + (GGATG)n Simple_repeat Simple_repeat 4 27 0 375 284 53 82 chr13 78186126 78186334 -41558564 - MER63A DNA MER1_type 0 210 9 1991 141 0 7 chr13 78186355 78186645 -41558253 - AluSx SINE Alu -24 288 1 1711 174 7 4 chr13 78187815 78188096 -41556802 + AluJo SINE Alu 12 293 -19 38 22 0 0 chr13 78188096 78188141 -41556757 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 78188814 78188835 -41556063 + AT_rich Low_complexity Low_complexity 1 21 0 332 263 50 0 chr13 78189452 78189551 -41555347 - MLT1D LTR MaLR 0 505 402 1314 213 66 21 chr13 78189588 78189921 -41554977 - MLT1D LTR MaLR -157 348 1 923 230 68 15 chr13 78190100 78190365 -41554533 + L1MCa LINE L1 882 1160 -5266 1106 186 47 39 chr13 78190379 78190658 -41554240 + MER93b LTR ERV1 91 371 -2 1150 204 232 31 chr13 78190660 78191169 -41553729 + L1MCa LINE L1 1306 1916 -4510 297 150 133 0 chr13 78191172 78191232 -41553666 + MLT2C1 LTR ERVL 3 70 -327 263 113 0 57 chr13 78191238 78191291 -41553607 + L1PB1 LINE L1 5743 5792 -359 408 87 70 9 chr13 78191293 78191408 -41553490 + (TA)n Simple_repeat Simple_repeat 2 123 0 2063 156 8 11 chr13 78191408 78191779 -41553119 + L1PB1 LINE L1 5781 6150 -1 878 231 45 74 chr13 78191785 78192122 -41552776 + MLT2C1 LTR ERVL 71 397 0 947 158 107 26 chr13 78192197 78192431 -41552467 + L1MCa LINE L1 2058 2310 -4116 2275 167 81 40 chr13 78192553 78193075 -41551823 + L1MC3 LINE L1 7088 7630 -155 300 172 0 0 chr13 78193217 78193275 -41551623 + GA-rich Low_complexity Low_complexity 2 59 0 41 58 0 0 chr13 78193372 78193441 -41551457 + AT_rich Low_complexity Low_complexity 1 69 0 1354 259 117 49 chr13 78193614 78194162 -41550736 - MLT1G1 LTR MaLR -8 587 3 454 303 58 113 chr13 78194364 78194743 -41550155 - L2 LINE L2 -8 3264 2907 340 204 75 21 chr13 78194858 78194951 -41549947 + L2 LINE L2 3203 3300 -13 1810 200 84 26 chr13 78195422 78195751 -41549147 + L1MA9 LINE L1 5784 6153 -159 2069 112 14 11 chr13 78195751 78196038 -41548860 - AluSx SINE Alu -19 293 6 1810 200 84 26 chr13 78196038 78196207 -41548691 + L1MA9 LINE L1 6153 6311 -1 1544 150 133 22 chr13 78198590 78198951 -41545947 - L1MB1 LINE L1 -3 6165 5765 277 349 9 37 chr13 78199360 78199469 -41545429 - MIR SINE MIR -152 110 5 192 279 12 70 chr13 78199707 78199793 -41545105 + MIR SINE MIR 174 254 -8 924 182 6 12 chr13 78202635 78202805 -41542093 - AluJo SINE Alu -24 288 120 1769 138 0 77 chr13 78202954 78203280 -41541618 - AluSx SINE Alu -11 301 1 23 33 0 0 chr13 78203463 78203493 -41541405 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr13 78203996 78204029 -41540869 + AT_rich Low_complexity Low_complexity 1 33 0 1489 170 167 19 chr13 78204053 78204424 -41540474 - MSTA LTR MaLR -2 426 1 1936 155 19 32 chr13 78205739 78206113 -41538785 - MLT1A2 LTR MaLR 0 374 6 484 256 38 62 chr13 78206187 78206398 -41538500 + MLT1L LTR MaLR 410 615 0 353 274 251 6 chr13 78206409 78206584 -41538314 - MIR SINE MIR -10 252 35 2303 103 3 0 chr13 78206693 78206994 -41537904 + AluSp SINE Alu 1 302 -11 2904 71 2 111 chr13 78210261 78210388 -41534510 - L1PB2 LINE L1 -2 6149 6010 2176 127 3 0 chr13 78210388 78210688 -41534210 - AluSg SINE Alu -9 301 1 2904 71 2 111 chr13 78210688 78211054 -41533844 - L1PB2 LINE L1 -141 6010 5710 719 209 23 35 chr13 78211652 78211822 -41533076 - MER69A DNA AcHobo -3 174 4 2210 119 0 0 chr13 78211870 78212165 -41532733 + AluSc SINE Alu 1 295 -14 233 244 131 57 chr13 78212926 78213102 -41531796 + MLT1K LTR MaLR 7 195 -393 265 281 0 21 chr13 78213259 78213355 -41531543 + LTR67 LTR ERVL 457 550 -7 26 74 0 0 chr13 78213786 78213840 -41531058 + AT_rich Low_complexity Low_complexity 1 54 0 288 0 0 0 chr13 78215309 78215341 -41529557 + (TG)n Simple_repeat Simple_repeat 2 33 0 783 270 65 8 chr13 78216781 78217044 -41527854 + LTR33A LTR ERVL 243 520 -3 1843 119 76 148 chr13 78217285 78217746 -41527152 - MSTA LTR MaLR 0 428 1 343 209 154 27 chr13 78217774 78217884 -41527014 - LTR16C LTR ERVL 0 491 368 2029 217 56 6 chr13 78217895 78218374 -41526524 - MLT1D LTR MaLR -2 503 1 1613 53 0 14 chr13 78218756 78218965 -41525933 - L1PA7 LINE L1 -247 5907 5702 1768 61 4 0 chr13 78218965 78219193 -41525705 + L1PA7 LINE L1 5925 6154 0 2501 77 0 0 chr13 78219514 78219825 -41525073 + AluY SINE Alu 1 311 0 271 293 71 62 chr13 78220159 78220497 -41524401 + L1MC/D LINE L1 5397 5737 -2071 488 291 65 83 chr13 78221163 78221596 -41523302 + HAL1 LINE L1 44 468 -2039 647 241 6 30 chr13 78221630 78221796 -41523102 + MER105 DNA DNA 1 162 -42 486 279 68 95 chr13 78221836 78222320 -41522578 + HAL1 LINE L1 479 949 -1558 284 271 42 10 chr13 78222306 78222402 -41522496 + HAL1 LINE L1 2399 2497 -10 * 1165 259 96 46 chr13 78223918 78224439 -41520459 - MLT1H LTR MaLR -2 547 1 1032 206 92 0 chr13 78224493 78224731 -41520167 + L1MD3 LINE L1 7731 7990 -5 311 253 53 21 chr13 78225333 78225428 -41519470 + MLT1K LTR MaLR 149 246 -342 562 202 147 25 chr13 78225509 78225707 -41519191 + MLT1K LTR MaLR 367 588 0 26 0 0 0 chr13 78227504 78227530 -41517368 + AT_rich Low_complexity Low_complexity 1 26 0 335 283 17 17 chr13 78227724 78227844 -41517054 + MIR SINE MIR 139 258 -4 353 335 30 30 chr13 78228949 78229116 -41515782 - L2 LINE L2 0 3272 3106 266 258 31 113 chr13 78229123 78229225 -41515673 - L2 LINE L2 -528 2786 2700 2063 148 0 3 chr13 78229225 78229528 -41515370 + AluSx SINE Alu 1 302 -10 266 258 31 113 chr13 78229528 78229584 -41515314 - L2 LINE L2 -614 2700 2641 1366 174 44 49 chr13 78229585 78229923 -41514975 - MLT2B1 LTR ERVL -91 429 1 2947 205 27 15 chr13 78230321 78230868 -41514030 + MLT2B3 LTR ERVL 1 554 0 270 298 128 0 chr13 78230982 78231076 -41513822 - MIR SINE MIR -75 133 28 36 23 0 0 chr13 78231361 78231404 -41513494 + AT_rich Low_complexity Low_complexity 1 43 0 571 259 50 0 chr13 78231519 78231658 -41513240 - MIR SINE MIR -115 147 2 362 158 0 0 chr13 78234024 78234081 -41510817 - MSTA LTR MaLR 0 428 372 26 0 0 0 chr13 78234081 78234107 -41510791 + AT_rich Low_complexity Low_complexity 1 26 0 1360 49 6 0 chr13 78234171 78234333 -41510565 - L1PA5 LINE L1 0 6154 5992 2090 146 31 14 chr13 78234347 78234704 -41510194 - MSTA LTR MaLR -58 370 8 393 136 0 0 chr13 78235675 78235741 -41509157 + (CA)n Simple_repeat Simple_repeat 2 67 0 330 203 0 43 chr13 78235783 78235852 -41509046 - MER96 DNA MER1_type? -102 73 8 394 328 113 5 chr13 78236291 78236440 -41508458 - MIR SINE MIR 0 262 86 2271 203 60 9 chr13 78236440 78236888 -41508010 - LTR32 LTR ERVL 0 471 1 394 328 113 5 chr13 78236888 78236933 -41507965 - MIR SINE MIR -176 86 47 707 267 34 10 chr13 78237973 78238179 -41506719 + LTR16C LTR ERVL 263 473 -18 264 242 137 0 chr13 78238650 78238745 -41506153 + MIR SINE MIR 143 250 -12 2185 132 3 0 chr13 78239809 78240119 -41504779 + AluSx SINE Alu 1 311 -1 215 304 52 26 chr13 78240404 78240519 -41504379 - L3 LINE CR1 -28 1549 1432 268 348 45 13 chr13 78240558 78240713 -41504185 - L3 LINE CR1 -332 1245 1086 197 128 0 26 chr13 78241359 78241398 -41503500 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 264 102 34 17 chr13 78241755 78241814 -41503084 + T-rich Low_complexity Low_complexity 5 64 0 218 331 31 39 chr13 78242445 78242575 -41502323 - L2 LINE L2 -7 3306 3178 2008 117 18 33 chr13 78242900 78243234 -41501664 - L1MC1 LINE L1 0 6333 6005 2994 70 0 0 chr13 78243415 78243770 -41501128 + THE1A LTR MaLR 1 355 0 12390 96 9 2 chr13 78243770 78245336 -41499562 + THE1A-int LTR MaLR 1 1577 -3 2650 102 6 28 chr13 78245339 78245702 -41499196 + THE1A LTR MaLR 1 355 0 560 328 31 5 chr13 78246142 78246337 -41498561 - MIR SINE MIR -9 253 54 2860 218 62 65 chr13 78247389 78247517 -41497381 + Zaphod DNA AcHobo 89 216 -3815 2301 119 47 41 chr13 78247517 78247879 -41497019 + THE1B LTR MaLR 1 364 0 2860 218 62 65 chr13 78247879 78248747 -41496151 + Zaphod DNA AcHobo 216 1082 -2949 453 285 93 0 chr13 78248745 78248896 -41496002 + Zaphod DNA AcHobo 3867 4031 0 * 2504 104 33 33 chr13 78249507 78249871 -41495027 - THE1B LTR MaLR 0 364 1 590 238 6 70 chr13 78250985 78251089 -41493809 - MIR SINE MIR -2 260 170 2208 128 7 0 chr13 78251089 78251395 -41493503 - AluSq SINE Alu -5 308 1 590 238 6 70 chr13 78251395 78251462 -41493436 - MIR SINE MIR -92 170 100 322 301 20 7 chr13 78251519 78251665 -41493233 + MER104 DNA Tc2 15 162 -18 23 78 0 0 chr13 78251749 78251800 -41493098 + AT_rich Low_complexity Low_complexity 1 51 0 1207 259 105 25 chr13 78251835 78252283 -41492615 + MLT1J LTR MaLR 28 511 0 828 188 0 0 chr13 78252975 78253108 -41491790 + FLAM_C SINE Alu 1 133 0 463 256 90 0 chr13 78253117 78253250 -41491648 + MER96 DNA MER1_type? 28 172 -3 2323 109 0 0 chr13 78253703 78254005 -41490893 - AluSc SINE Alu -7 302 1 3056 127 22 4 chr13 78254196 78254653 -41490245 + MLT1C LTR MaLR 3 467 0 1302 282 13 37 chr13 78254801 78255205 -41489693 + MLT1J LTR MaLR 61 494 -17 564 245 240 30 chr13 78255205 78255568 -41489330 + MLT1J LTR MaLR 2 440 -71 17298 128 53 4 chr13 78257372 78259976 -41484922 + Tigger4(Zombi) DNA MER2_type 1 2731 0 2094 187 5 68 chr13 78260220 78260557 -41484341 - MLT2D LTR ERVL 0 414 110 2541 89 0 15 chr13 78260557 78260893 -41484005 + L1PB1 LINE L1 5820 6150 -1 2094 187 5 68 chr13 78260893 78260993 -41483905 - MLT2D LTR ERVL -304 110 5 2385 96 3 0 chr13 78261462 78261763 -41483135 + AluSp SINE Alu 1 302 -11 2141 117 0 29 chr13 78262847 78263156 -41481742 + AluSx SINE Alu 1 300 -12 746 253 84 10 chr13 78263341 78263543 -41481355 + MIR SINE MIR 46 262 0 2110 112 7 3 chr13 78263654 78263949 -41480949 - AluSx SINE Alu -16 296 1 295 75 0 0 chr13 78264091 78264131 -41480767 + L1PA16 LINE L1 5723 5762 -404 321 177 16 0 chr13 78264252 78264314 -41480584 + MIR SINE MIR 80 142 -120 2325 143 25 13 chr13 78264316 78264709 -41480189 + L1PA16 LINE L1 5766 6163 -3 451 256 31 23 chr13 78264993 78265122 -41479776 + MIR SINE MIR 80 209 -53 246 136 0 0 chr13 78265136 78265180 -41479718 + (CAT)n Simple_repeat Simple_repeat 2 45 0 325 175 267 25 chr13 78265475 78265595 -41479303 - MIR3 SINE MIR -55 153 5 1940 155 0 7 chr13 78265913 78266209 -41478689 - AluSx SINE Alu -10 302 9 207 281 0 18 chr13 78266549 78266606 -41478292 + L2 LINE L2 3246 3301 -12 2123 283 193 11 chr13 78267030 78268090 -41476808 + L2 LINE L2 1276 2527 -787 1687 167 172 147 chr13 78268304 78268949 -41475949 - L1MD2 LINE L1 -38 6204 5544 1286 270 87 35 chr13 78268957 78269667 -41475231 + L2 LINE L2 2570 3313 0 9112 101 13 12 chr13 78269811 78271084 -41473814 + HSMAR1 DNA Mariner 13 1286 -1 1000 104 30 0 chr13 78271379 78271514 -41473384 - AluSg/x SINE Alu -15 297 159 213 338 0 0 chr13 78271730 78271801 -41473097 - MIR SINE MIR -3 259 189 287 294 0 0 chr13 78271801 78271869 -41473029 - MIR SINE MIR -175 87 20 202 289 35 78 chr13 78271975 78272117 -41472781 - MIR3 SINE MIR -71 137 2 658 200 81 27 chr13 78272479 78272664 -41472234 + MIR SINE MIR 68 262 0 189 0 0 0 chr13 78273060 78273081 -41471817 + (A)n Simple_repeat Simple_repeat 1 21 0 4833 131 31 68 chr13 78273803 78274823 -41470075 - L1PB4 LINE L1 -13 6143 5158 187 261 141 11 chr13 78276207 78276299 -41468599 - L2 LINE L2 -98 3215 3112 371 240 55 62 chr13 78276474 78276670 -41468228 - MLT1J2 LTR MaLR -11 442 266 2241 51 0 11 chr13 78278085 78278424 -41466474 + AluY SINE Alu 12 347 0 225 0 0 0 chr13 78278613 78278638 -41466260 + (A)n Simple_repeat Simple_repeat 1 25 0 466 307 6 6 chr13 78279109 78279288 -41465610 + (TG)n Simple_repeat Simple_repeat 1 179 0 837 114 8 0 chr13 78280056 78280188 -41464710 + L1MA10 LINE L1 6191 6323 -11 326 276 126 31 chr13 78280258 78280385 -41464513 - MIR SINE MIR -75 187 49 461 217 56 50 chr13 78280546 78280707 -41464191 - MIR SINE MIR -14 248 87 1587 261 160 55 chr13 78280707 78282022 -41462876 - L1MDa LINE L1 -5067 1473 21 229 369 60 12 chr13 78282026 78282110 -41462788 - MIR SINE MIR -168 94 7 2029 162 32 3 chr13 78282135 78282505 -41462393 - MLT1B LTR MaLR 0 390 10 24 67 0 0 chr13 78283319 78283364 -41461534 + AT_rich Low_complexity Low_complexity 1 45 0 270 295 34 0 chr13 78283575 78283668 -41461230 - MER5A DNA MER1_type -32 146 51 2273 130 28 3 chr13 78284103 78284458 -41460440 - THE1B LTR MaLR 0 364 1 998 207 10 5 chr13 78286955 78287158 -41457740 + MER20 DNA MER1_type 16 219 0 241 91 0 55 chr13 78287478 78287533 -41457365 + L1M LINE L1 5254 5305 -995 2293 101 3 0 chr13 78287753 78288059 -41456839 + AluSc SINE Alu 2 308 -1 2358 82 0 3 chr13 78288062 78288367 -41456531 + AluY SINE Alu 1 304 -7 320 302 126 5 chr13 78288417 78288632 -41456266 - MER112 DNA MER1_type -12 248 8 375 240 0 0 chr13 78289162 78289237 -41455661 - MIR SINE MIR -121 141 67 821 251 76 5 chr13 78289389 78289600 -41455298 + MIR SINE MIR 26 251 -11 407 352 159 15 chr13 78290466 78290861 -41454037 - L2 LINE L2 -646 2668 2217 422 266 11 85 chr13 78291089 78291138 -41453760 + MIR SINE MIR 75 126 -136 1843 174 13 3 chr13 78291138 78291442 -41453456 + AluSx SINE Alu 2 308 -4 422 266 11 85 chr13 78291442 78291569 -41453329 + MIR SINE MIR 126 238 -24 375 98 0 0 chr13 78291688 78291749 -41453149 + (CA)n Simple_repeat Simple_repeat 1 61 0 216 0 0 0 chr13 78293484 78293508 -41451390 + (A)n Simple_repeat Simple_repeat 1 24 0 696 210 105 25 chr13 78293820 78294020 -41450878 + MIR SINE MIR 36 251 -11 321 310 243 16 chr13 78294172 78294624 -41450274 - L3 LINE CR1 -218 1359 805 695 207 50 7 chr13 78296062 78296202 -41448696 - AluJb SINE Alu -30 282 137 324 319 86 38 chr13 78296301 78296712 -41448186 + L1M4 LINE L1 4488 4927 -1219 21 0 0 0 chr13 78296892 78296913 -41447985 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 78297075 78297096 -41447802 + AT_rich Low_complexity Low_complexity 1 21 0 2000 81 11 3 chr13 78297138 78297421 -41447477 + L1PB1 LINE L1 5867 6151 0 634 314 63 9 chr13 78297483 78297706 -41447192 + MIR SINE MIR 24 258 -4 476 356 6 12 chr13 78297732 78297892 -41447006 - L2 LINE L2 -3 3269 3111 405 345 140 16 chr13 78298066 78298503 -41446395 - L2 LINE L2 -2158 1156 666 2153 99 0 3 chr13 78298571 78298865 -41446033 + AluSc SINE Alu 1 293 -16 667 80 0 40 chr13 78299994 78300094 -41444804 - AluSg/x SINE Alu -17 293 198 1344 199 36 4 chr13 78300217 78300468 -41444430 - AluSx SINE Alu -53 259 1 21 57 0 0 chr13 78300471 78300506 -41444392 + AT_rich Low_complexity Low_complexity 1 35 0 2508 156 22 18 chr13 78300545 78301044 -41443854 + L1MA7 LINE L1 5788 6288 -3 21 57 0 0 chr13 78301198 78301233 -41443665 + AT_rich Low_complexity Low_complexity 1 35 0 38 37 0 49 chr13 78301284 78301366 -41443532 + AT_rich Low_complexity Low_complexity 1 78 0 21 0 0 0 chr13 78303199 78303220 -41441678 + AT_rich Low_complexity Low_complexity 1 21 0 337 261 0 0 chr13 78303705 78303774 -41441124 + L2 LINE L2 3185 3253 -19 186 43 0 0 chr13 78303780 78303803 -41441095 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 257 279 49 49 chr13 78303833 78303955 -41440943 - MIR SINE MIR -41 221 100 201 325 0 12 chr13 78304125 78304205 -41440693 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 1216 185 9 94 chr13 78304955 78305284 -41439614 + AluJb SINE Alu 1 301 -1 190 270 63 70 chr13 78305383 78305544 -41439354 + MIR SINE MIR 66 227 -35 401 290 257 15 chr13 78306341 78306676 -41438222 + L3 LINE CR1 1136 1551 -26 4116 168 116 16 chr13 78307080 78308301 -41436597 + L1MA9 LINE L1 4941 6290 -22 1581 233 58 26 chr13 78308322 78308785 -41436113 + HsTC2c DNA Tc2 233 710 -19 295 207 0 35 chr13 78308924 78309011 -41435887 + L1PB4 LINE L1 6068 6151 -5 2040 129 7 0 chr13 78312109 78312395 -41432503 - AluSx SINE Alu -24 288 1 2310 113 0 0 chr13 78312502 78312813 -41432085 - AluY SINE Alu 0 311 1 227 176 187 22 chr13 78312839 78312930 -41431968 + L1ME4a LINE L1 6016 6121 0 275 314 57 14 chr13 78313155 78313295 -41431603 + MIR3 SINE MIR 37 182 -26 27 29 0 0 chr13 78314665 78314699 -41430199 + AT_rich Low_complexity Low_complexity 1 34 0 445 213 134 0 chr13 78314762 78314889 -41430009 - MIR SINE MIR -13 249 106 203 425 19 0 chr13 78315696 78315802 -41429096 - L3b LINE CR1 -93 1490 1383 285 261 189 0 chr13 78316951 78317062 -41427836 + MIR SINE MIR 53 184 -78 2307 87 3 13 chr13 78317410 78317709 -41427189 + AluSq SINE Alu 1 296 -17 2285 104 0 0 chr13 78317710 78318009 -41426889 + AluSq SINE Alu 2 300 -13 21 0 0 0 chr13 78318311 78318332 -41426566 + AT_rich Low_complexity Low_complexity 1 21 0 1515 197 39 49 chr13 78318715 78319105 -41425793 + MLT1B LTR MaLR 2 387 -3 4626 139 42 31 chr13 78320069 78321493 -41423405 - L1MA8 LINE L1 -23 6289 4885 330 200 12 24 chr13 78321619 78321730 -41423168 - L1P LINE L1 -746 5408 5315 771 166 0 0 chr13 78321849 78321994 -41422904 + L1MB3 LINE L1 6037 6181 -2 1106 124 7 0 chr13 78322522 78322675 -41422223 + AluSg/x SINE Alu 133 286 -26 810 204 55 6 chr13 78323130 78323311 -41421587 + MER20 DNA MER1_type 29 218 -1 458 220 15 140 chr13 78323753 78323953 -41420945 + MER5B DNA MER1_type 4 178 0 2398 77 0 13 chr13 78324381 78324681 -41420217 - AluSc SINE Alu -3 306 11 26 50 0 0 chr13 78325278 78325318 -41419580 + AT_rich Low_complexity Low_complexity 1 40 0 571 261 93 32 chr13 78325352 78325697 -41419201 - L1MC4a LINE L1 -1643 6165 5800 1626 118 25 25 chr13 78325856 78326135 -41418763 - L1MA6 LINE L1 -4 6296 6018 4476 147 30 50 chr13 78326136 78327676 -41417222 + L1MA6 LINE L1 4535 6041 -259 1366 209 130 55 chr13 78328129 78328599 -41416299 + MLT1D LTR MaLR 1 505 0 2227 143 60 24 chr13 78329725 78329970 -41414928 - MSTA LTR MaLR 0 428 160 1931 120 0 11 chr13 78329970 78330244 -41414654 + AluSx SINE Alu 40 310 -2 2227 143 60 24 chr13 78330244 78330411 -41414487 - MSTA LTR MaLR -268 160 1 442 338 83 22 chr13 78331669 78331897 -41413001 + MIR SINE MIR 4 245 -17 1677 163 11 4 chr13 78332030 78332294 -41412604 + AluJo SINE Alu 1 266 -46 213 219 0 0 chr13 78332385 78332426 -41412472 + T-rich Low_complexity Low_complexity 5 45 0 461 252 204 0 chr13 78332924 78333130 -41411768 + MER102b DNA MER1_type 86 333 -8 623 293 74 7 chr13 78333460 78333757 -41411141 + L1M4 LINE L1 2257 2573 -3573 284 310 19 6 chr13 78333834 78333992 -41410906 + L1M4 LINE L1 2686 2845 -3301 1658 192 102 50 chr13 78334240 78334682 -41410216 + MER31B LTR ERV1 1 543 0 3913 218 42 60 chr13 78334732 78335124 -41409774 + MER31B-int LTR ERV1 15 412 -4524 3876 185 35 1 chr13 78335124 78335832 -41409066 + MER44D DNA MER2_type 1 604 -1 3913 218 42 60 chr13 78335832 78336430 -41408468 + MER31B-int LTR ERV1 412 988 -3948 1845 190 39 67 chr13 78336531 78336694 -41408204 + MER21B LTR ERV1 443 609 -254 1938 163 0 3 chr13 78336694 78336995 -41407903 + AluJo SINE Alu 1 300 -12 1845 190 39 67 chr13 78336995 78337114 -41407784 + MER21B LTR ERV1 609 730 -133 1888 141 20 23 chr13 78337114 78337413 -41407485 + AluSx SINE Alu 1 298 -14 1845 190 39 67 chr13 78337413 78337561 -41407337 + MER21B LTR ERV1 730 862 -1 304 285 252 33 chr13 78337700 78337942 -41406956 - HAL1 LINE L1 -1387 1120 826 2733 139 78 95 chr13 78339057 78339343 -41405555 + MER7C DNA MER2_type 1 290 -2738 1155 80 0 0 chr13 78339343 78339493 -41405405 + L1PB1 LINE L1 5996 6145 -6 2733 139 78 95 chr13 78339493 78339818 -41405080 + MER7C DNA MER2_type 290 602 0 3188 157 11 3 chr13 78340930 78341496 -41403402 + L1MA5 LINE L1 4443 5012 -1134 2070 114 15 81 chr13 78341501 78341897 -41403001 + L1MA5 LINE L1 5460 5829 -471 1706 171 7 10 chr13 78341898 78342191 -41402707 + AluSx SINE Alu 3 294 -18 1898 136 7 14 chr13 78342564 78342859 -41402039 - AluSx SINE Alu -16 296 4 2035 156 12 6 chr13 78342913 78343259 -41401639 + MER7A DNA MER2_type 1 346 0 1659 191 35 85 chr13 78343268 78343892 -41401006 - L1MC5 LINE L1 -101 7860 7268 894 201 73 19 chr13 78344024 78344300 -41400598 - L1MC4 LINE L1 -728 7233 6959 209 274 20 0 chr13 78344327 78344378 -41400520 + CT-rich Low_complexity Low_complexity 5 56 0 25 31 0 0 chr13 78345438 78345470 -41399428 + AT_rich Low_complexity Low_complexity 1 32 0 1219 147 118 0 chr13 78345916 78346127 -41398771 + MER46A DNA MER2_type 1 236 0 236 231 165 74 chr13 78346192 78346313 -41398585 - MIR3 SINE MIR -71 137 6 1712 167 67 85 chr13 78347137 78347573 -41397325 + MSTA LTR MaLR 1 428 0 536 234 133 37 chr13 78347792 78347980 -41396918 - MIR SINE MIR -12 250 45 859 289 118 22 chr13 78348321 78348823 -41396075 + Charlie7 DNA MER1_type 12 561 -2051 1179 78 0 0 chr13 78349096 78349238 -41395660 - AluSc SINE Alu -18 291 150 209 176 0 0 chr13 78349395 78349429 -41395469 + MIR SINE MIR 95 128 -134 * 488 242 81 34 chr13 78349427 78349576 -41395322 - MIR SINE MIR -91 171 16 453 245 29 0 chr13 78349602 78349704 -41395194 + MIR SINE MIR 158 262 0 2229 100 0 3 chr13 78350147 78350447 -41394451 - AluSg SINE Alu -11 299 1 234 176 14 95 chr13 78351214 78351236 -41393662 + LTR67 LTR ERVL 489 511 -46 2565 109 8 11 chr13 78351236 78351612 -41393286 - THE1C LTR MaLR 0 375 1 234 176 14 95 chr13 78351612 78351663 -41393235 + LTR67 LTR ERVL 511 556 -1 21 0 0 0 chr13 78351969 78351990 -41392908 + AT_rich Low_complexity Low_complexity 1 21 0 318 226 35 0 chr13 78352031 78352146 -41392752 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 691 212 0 8 chr13 78352175 78352307 -41392591 - AluJb SINE Alu -45 267 137 885 123 0 0 chr13 78353466 78353604 -41391294 + (TA)n Simple_repeat Simple_repeat 2 139 0 2217 87 3 7 chr13 78353608 78353897 -41391001 - AluSq SINE Alu -24 289 2 200 61 61 0 chr13 78353994 78354027 -41390871 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1976 203 51 7 chr13 78354182 78354615 -41390283 - MLT1C LTR MaLR -10 457 6 2026 136 3 0 chr13 78355245 78355547 -41389351 - AluJb SINE Alu -9 303 1 966 241 90 63 chr13 78356810 78357221 -41387677 + MLT1J1 LTR MaLR 2 423 -23 2439 139 60 0 chr13 78357221 78357624 -41387274 + MSTA LTR MaLR 1 427 -1 300 167 0 0 chr13 78357624 78357696 -41387202 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 198 245 0 20 chr13 78358766 78358815 -41386083 - L2 LINE L2 -208 3064 3017 489 308 107 48 chr13 78359369 78359723 -41385175 + L2 LINE L2 2381 2755 -559 1007 219 98 50 chr13 78359733 78360090 -41384808 + MLT1A2 LTR MaLR 1 374 0 2349 98 0 0 chr13 78360242 78360537 -41384361 - AluSq SINE Alu -18 295 1 202 315 18 45 chr13 78360586 78360697 -41384201 + L2 LINE L2 2988 3095 -218 1781 149 0 50 chr13 78360747 78361048 -41383850 - AluSx SINE Alu -26 286 1 1447 203 103 32 chr13 78361052 78361422 -41383476 + MLT1D LTR MaLR 108 503 -2 468 167 0 0 chr13 78362863 78362935 -41381963 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2191 241 53 6 chr13 78362957 78363614 -41381284 + L1M4 LINE L1 3802 4489 -1657 216 268 27 116 chr13 78363754 78363866 -41381032 + MIR SINE MIR 153 254 -8 1538 253 89 45 chr13 78364613 78364729 -41380169 - L1ME3A LINE L1 -3 6167 6058 2390 86 0 0 chr13 78364729 78365021 -41379877 + AluSg SINE Alu 1 292 -18 1538 253 89 45 chr13 78365021 78365569 -41379329 - L1ME3A LINE L1 -112 6058 5474 44 20 0 0 chr13 78366328 78366379 -41378519 + AT_rich Low_complexity Low_complexity 1 51 0 508 99 56 12 chr13 78366379 78366541 -41378357 + (TA)n Simple_repeat Simple_repeat 2 170 0 208 53 53 0 chr13 78366553 78366591 -41378307 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 25 51 0 0 chr13 78366591 78366630 -41378268 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr13 78366753 78366776 -41378122 + AT_rich Low_complexity Low_complexity 1 23 0 459 311 25 0 chr13 78367008 78367127 -41377771 - L2 LINE L2 -4 3309 3188 25 0 0 0 chr13 78367150 78367175 -41377723 + AT_rich Low_complexity Low_complexity 1 25 0 3127 199 55 68 chr13 78367681 78368586 -41376312 - MER31-int LTR ERV1 -1254 3682 2790 2305 92 0 3 chr13 78368586 78368892 -41376006 + AluSq SINE Alu 1 305 -8 3127 199 55 68 chr13 78368892 78368976 -41375922 - MER31-int LTR ERV1 -2146 2790 2706 3385 199 62 80 chr13 78368996 78369092 -41375806 - MER31-int LTR ERV1 -2359 2577 2481 2535 70 3 0 chr13 78369092 78369404 -41375494 + AluSp SINE Alu 1 313 0 3385 199 62 80 chr13 78369404 78370590 -41374308 - MER31-int LTR ERV1 -2455 2481 1318 241 139 0 0 chr13 78370616 78370652 -41374246 - Alu SINE Alu -20 282 247 231 61 0 0 chr13 78371291 78371324 -41373574 + (A)n Simple_repeat Simple_repeat 1 33 0 2034 106 6 48 chr13 78371578 78371889 -41373009 + AluSq SINE Alu 1 298 -15 2280 84 0 10 chr13 78371926 78372224 -41372674 + AluSq SINE Alu 6 300 -13 344 308 119 63 chr13 78372690 78373039 -41371859 + L1MEd LINE L1 841 1178 -1329 377 314 174 4 chr13 78373098 78373334 -41371564 + L1MC4a LINE L1 5787 6062 -1746 24 32 0 0 chr13 78374520 78374551 -41370347 + AT_rich Low_complexity Low_complexity 1 31 0 548 236 70 58 chr13 78375375 78375634 -41369264 + LTR37A LTR ERV1 43 304 -122 2238 116 3 0 chr13 78375689 78375982 -41368916 - AluSx SINE Alu -18 294 1 2393 71 3 0 chr13 78376087 78376382 -41368516 - AluY SINE Alu -15 296 1 576 250 45 34 chr13 78376392 78376568 -41368330 - MIR SINE MIR -43 219 42 190 279 213 0 chr13 78376595 78376656 -41368242 - MIR SINE MIR -185 77 4 902 138 0 0 chr13 78377125 78377248 -41367650 - FLAM_C SINE Alu -20 123 1 373 264 153 31 chr13 78378167 78378330 -41366568 + L1ME LINE L1 5408 5590 -531 262 254 0 16 chr13 78378330 78378393 -41366505 + (TG)n Simple_repeat Simple_repeat 2 63 0 631 278 40 5 chr13 78378399 78378622 -41366276 + L1ME LINE L1 5592 5822 -299 1454 116 0 0 chr13 78380081 78380279 -41364619 + AluSc SINE Alu 1 198 -111 1119 155 53 21 chr13 78380381 78380568 -41364330 - AluJb SINE Alu -119 193 1 3177 193 115 31 chr13 78380617 78380772 -41364126 - L1MB4 LINE L1 0 6180 6039 1475 199 27 17 chr13 78380772 78381069 -41363829 + AluJo SINE Alu 1 300 -12 3177 193 115 31 chr13 78381069 78382409 -41362489 - L1MB4 LINE L1 -141 6039 4562 558 160 73 20 chr13 78382627 78382777 -41362121 + L1MA5 LINE L1 6143 6300 0 1832 147 44 3 chr13 78382937 78383450 -41361448 + L1M2 LINE L1 4992 5524 -743 2169 92 11 0 chr13 78383453 78383737 -41361161 - AluSq SINE Alu -24 289 3 907 188 62 36 chr13 78383792 78384016 -41360882 - AluJo SINE Alu -81 231 2 1259 100 41 3 chr13 78385255 78385544 -41359354 - THE1C LTR MaLR 0 375 1 2317 113 22 22 chr13 78385588 78385952 -41358946 - THE1B LTR MaLR 0 364 1 614 219 134 12 chr13 78386439 78386603 -41358295 - MIR SINE MIR -77 185 2 971 33 0 0 chr13 78386748 78386869 -41358029 + L1PA10 LINE L1 5730 5850 -318 1345 235 72 46 chr13 78386869 78387366 -41357532 + LTR41 LTR ERVL 65 574 -199 303 297 231 26 chr13 78388091 78388286 -41356612 + MIR SINE MIR 17 251 -11 1243 178 59 118 chr13 78388327 78388466 -41356432 - MLT1C LTR MaLR -11 449 303 3668 120 2 11 chr13 78388466 78388998 -41355900 - MER1A DNA MER1_type 0 527 1 1243 178 59 118 chr13 78388998 78389346 -41355552 - MLT1C LTR MaLR -157 303 1 189 0 0 0 chr13 78390058 78390079 -41354819 + (TC)n Simple_repeat Simple_repeat 1 21 0 532 246 15 8 chr13 78390514 78390644 -41354254 + MIR SINE MIR 132 262 0 364 176 144 40 chr13 78391171 78391296 -41353602 + MER103 DNA DNA 11 148 -18 282 278 0 79 chr13 78391317 78391443 -41353455 + MIR SINE MIR 32 147 -61 570 286 0 82 chr13 78391666 78391897 -41353001 + MLT1K LTR MaLR 13 224 -364 201 152 0 0 chr13 78391948 78391981 -41352917 + GA-rich Low_complexity Low_complexity 1 33 0 2213 205 7 76 chr13 78392423 78393134 -41351764 + L1MD2 LINE L1 5314 5935 -255 1602 153 44 26 chr13 78393144 78393484 -41351414 - L1MA7 LINE L1 -6 6285 5940 2337 149 39 5 chr13 78393488 78394065 -41350833 + L1M2 LINE L1 5115 5714 -577 599 240 64 80 chr13 78394083 78394180 -41350718 + L1MD2 LINE L1 5921 6018 -341 2360 94 0 0 chr13 78394180 78394477 -41350421 - AluSg SINE Alu -13 297 1 599 240 64 80 chr13 78394477 78394692 -41350206 + L1MD2 LINE L1 6018 6228 -131 * 861 161 104 0 chr13 78394686 78394878 -41350020 + L1PA16 LINE L1 5938 6149 -17 246 248 142 0 chr13 78394892 78395005 -41349893 + L1MD2 LINE L1 6214 6342 -17 14969 138 68 16 chr13 78395140 78398318 -41346580 + L1M1 LINE L1 844 4193 -3372 605 131 0 28 chr13 78398425 78398577 -41346321 + (CATATA)n Simple_repeat Simple_repeat 1 147 0 244 275 0 88 chr13 78398601 78398681 -41346217 + L2 LINE L2 3228 3300 -13 469 190 107 0 chr13 78398880 78399001 -41345897 - MLT1L LTR MaLR -1 614 481 367 263 25 50 chr13 78399151 78399311 -41345587 - MLT1L LTR MaLR -371 244 89 307 287 25 82 chr13 78399428 78399672 -41345226 - L2 LINE L2 -1341 1973 1744 2288 102 0 0 chr13 78400112 78400406 -41344492 + AluSx SINE Alu 1 294 -18 1707 172 75 8 chr13 78400418 78400477 -41344421 - L1MA8 LINE L1 -4 6287 6233 375 23 0 0 chr13 78400477 78400521 -41344377 + (TA)n Simple_repeat Simple_repeat 2 45 0 1707 172 75 8 chr13 78400521 78400821 -41344077 - L1MA8 LINE L1 -58 6233 5904 688 178 0 0 chr13 78400821 78400950 -41343948 + MER51A LTR ERV1 1 129 -505 28 0 0 0 chr13 78401050 78401078 -41343820 + AT_rich Low_complexity Low_complexity 1 28 0 602 281 138 0 chr13 78402119 78402322 -41342576 - MIR SINE MIR -21 241 11 442 308 117 29 chr13 78402366 78402914 -41341984 + L1ME LINE L1 5272 5855 -266 216 220 495 0 chr13 78403028 78403137 -41341761 + MIR SINE MIR 15 177 -85 236 228 0 0 chr13 78404232 78404289 -41340609 - MLT2C2 LTR ERVL 0 520 464 207 183 49 24 chr13 78404309 78404391 -41340507 + (TA)n Simple_repeat Simple_repeat 2 85 0 1894 165 46 19 chr13 78404392 78404804 -41340094 - MLT2C2 LTR ERVL -41 423 1 370 244 37 0 chr13 78404852 78404934 -41339964 - MIR SINE MIR -165 97 13 43 0 0 0 chr13 78405159 78405202 -41339696 + AT_rich Low_complexity Low_complexity 1 43 0 1699 91 15 11 chr13 78405211 78405474 -41339424 + L1MA1 LINE L1 6039 6302 0 2326 109 0 3 chr13 78405818 78406122 -41338776 - AluSx SINE Alu -7 305 3 316 233 48 10 chr13 78406510 78406613 -41338285 - MLT1J2 LTR MaLR 0 450 344 611 103 95 9 chr13 78406972 78407088 -41337810 + L1MA5 LINE L1 6173 6298 -2 314 284 90 54 chr13 78407575 78407797 -41337101 - MIR SINE MIR -25 237 8 286 179 0 18 chr13 78407801 78407857 -41337041 + MER103 DNA DNA 29 83 -83 1223 180 19 127 chr13 78407858 78408220 -41336678 - MLT1A1 LTR MaLR 0 365 43 237 241 86 0 chr13 78409956 78410014 -41334884 - L3 LINE CR1 -3 1574 1512 290 178 0 0 chr13 78410157 78410202 -41334696 + Alu SINE Alu 6 50 -253 219 295 91 43 chr13 78410329 78410539 -41334359 + L2 LINE L2 2517 2736 -578 21 0 0 0 chr13 78411487 78411508 -41333390 + AT_rich Low_complexity Low_complexity 1 21 0 1804 168 0 24 chr13 78412109 78412407 -41332491 + AluJo SINE Alu 5 295 -17 369 250 250 0 chr13 78413340 78413484 -41331414 + MIR SINE MIR 13 192 -70 227 336 19 29 chr13 78413477 78413581 -41331317 - MIR SINE MIR -73 135 33 * 243 317 106 16 chr13 78413994 78414117 -41330781 + L2 LINE L2 3139 3272 0 333 336 198 18 chr13 78414893 78415399 -41329499 + L2 LINE L2 880 1476 -1838 599 291 0 0 chr13 78415517 78415668 -41329230 - MIR SINE MIR -30 232 82 451 293 16 0 chr13 78415773 78415896 -41329002 - MIR SINE MIR -130 132 8 275 309 72 22 chr13 78416055 78416194 -41328704 + L2 LINE L2 3167 3312 -1 411 200 100 67 chr13 78417338 78417415 -41327483 + HAL1b LINE L1 60 133 -1215 1718 182 10 77 chr13 78417415 78417738 -41327160 + MLT1A1 LTR MaLR 1 295 -70 2410 73 3 0 chr13 78417738 78418040 -41326858 - AluY SINE Alu -8 303 1 1718 182 10 77 chr13 78418040 78418107 -41326791 + MLT1A1 LTR MaLR 295 365 0 411 200 100 67 chr13 78418107 78418179 -41326719 + HAL1b LINE L1 133 214 -1134 21 100 0 0 chr13 78418574 78418644 -41326254 + AT_rich Low_complexity Low_complexity 1 70 0 1263 262 73 5 chr13 78418892 78419289 -41325609 - MLT1F LTR MaLR 0 542 119 394 276 26 13 chr13 78419363 78419515 -41325383 + L1ME LINE L1 5529 5682 -439 27 49 0 0 chr13 78419538 78419579 -41325319 + AT_rich Low_complexity Low_complexity 1 41 0 847 209 20 64 chr13 78419624 78419873 -41325025 + HsTC2 DNA Tc2 9 246 -1652 1454 224 16 8 chr13 78419875 78420255 -41324643 + L1 LINE L1 2768 3150 -2996 297 0 0 0 chr13 78421581 78421614 -41323284 + (A)n Simple_repeat Simple_repeat 1 33 0 549 249 34 28 chr13 78423219 78423396 -41321502 - MER5B DNA MER1_type 0 178 1 203 238 32 0 chr13 78423846 78423909 -41320989 + MER5A DNA MER1_type 48 112 -77 187 315 37 0 chr13 78424398 78424452 -41320446 + L2 LINE L2 3247 3302 -11 211 337 105 12 chr13 78424982 78425068 -41319830 - L2 LINE L2 -17 3296 3203 248 311 66 33 chr13 78425218 78425369 -41319529 - L2 LINE L2 -194 3078 2923 27 49 0 0 chr13 78426002 78426043 -41318855 + AT_rich Low_complexity Low_complexity 1 41 0 4638 96 32 13 chr13 78426681 78427389 -41317509 - L1P3 LINE L1 -5731 730 9 642 214 89 27 chr13 78427391 78427667 -41317231 - HsTC2 DNA Tc2 -261 1637 1169 2079 125 3 10 chr13 78427946 78428243 -41316655 - AluSx SINE Alu -17 295 1 1203 215 124 43 chr13 78428427 78428799 -41316099 + MER92B LTR ERV1 2 403 -233 474 213 0 0 chr13 78428818 78428912 -41315986 + MER92B LTR ERV1 543 636 0 25 0 0 0 chr13 78429094 78429119 -41315779 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 78429559 78429587 -41315311 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 78429751 78429781 -41315117 + AT_rich Low_complexity Low_complexity 1 30 0 803 105 0 32 chr13 78430181 78430305 -41314593 - AluSg/x SINE Alu -20 290 171 2236 58 65 3 chr13 78430414 78430705 -41314193 + AluY SINE Alu 3 311 0 333 120 267 0 chr13 78431412 78431487 -41313411 - L1M3 LINE L1 -516 5667 5573 180 100 0 0 chr13 78431631 78431661 -41313237 - L2 LINE L2 0 3313 3284 1365 263 83 19 chr13 78431716 78432149 -41312749 + LTR16B LTR ERVL 4 464 0 629 259 129 27 chr13 78433066 78433290 -41311608 - MIR SINE MIR -3 259 13 195 232 0 0 chr13 78434938 78434994 -41309904 + (CAT)n Simple_repeat Simple_repeat 1 56 0 341 313 67 33 chr13 78435457 78435607 -41309291 + MIR SINE MIR 20 174 -88 685 175 0 0 chr13 78435716 78435830 -41309068 + L1P4 LINE L1 5435 5548 -618 397 238 12 0 chr13 78436382 78436462 -41308436 + MER63 DNA MER1_type 680 760 -76 183 80 0 0 chr13 78436899 78436924 -41307974 + (A)n Simple_repeat Simple_repeat 1 25 0 2261 110 3 0 chr13 78437468 78437769 -41307129 + AluSx SINE Alu 1 302 -10 761 124 39 16 chr13 78437770 78437899 -41306999 + L1MA9 LINE L1 5778 5909 -403 2093 123 3 3 chr13 78437901 78438202 -41306696 + AluSc SINE Alu 1 301 -8 2805 106 16 49 chr13 78438205 78438658 -41306240 - MER51A LTR ERV1 0 634 197 577 105 137 0 chr13 78438759 78438854 -41306044 + Tigger4(Zombi) DNA MER2_type 2624 2731 0 397 296 21 21 chr13 78438854 78438996 -41305902 - MIR SINE MIR -111 151 10 1855 158 20 7 chr13 78439866 78440164 -41304734 + AluSx SINE Alu 1 302 -10 345 239 0 45 chr13 78440970 78441058 -41303840 + MIR SINE MIR 56 139 -123 350 228 9 79 chr13 78442090 78442204 -41302694 - MLT1J1 LTR MaLR -325 121 16 617 176 92 142 chr13 78442267 78442528 -41302370 - HsTC2 DNA Tc2 -32 1866 1619 28773 110 34 28 chr13 78442532 78447962 -41296936 - L1PA10 LINE L1 0 6168 717 1396 146 5 9 chr13 78448077 78448296 -41296602 + MSTA LTR MaLR 211 428 0 830 246 19 5 chr13 78448296 78448507 -41296391 - L1MC/D LINE L1 -563 5796 5583 2299 105 3 3 chr13 78448509 78448814 -41296084 - AluSx SINE Alu -7 305 1 833 211 34 6 chr13 78448816 78448991 -41295907 - MER115 DNA AcHobo -62 631 452 180 0 0 0 chr13 78448995 78449015 -41295883 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 2132 72 4 18 chr13 78449088 78449365 -41295533 - AluSp SINE Alu -10 303 31 2337 82 0 16 chr13 78450319 78450622 -41294276 + AluSc SINE Alu 1 298 -11 1410 139 14 0 chr13 78450622 78450845 -41294053 - Tigger1 DNA MER2_type -2192 226 1 249 71 0 54 chr13 78450917 78450973 -41293925 + (TTC)n Simple_repeat Simple_repeat 2 54 0 322 75 0 0 chr13 78451150 78451190 -41293708 + MER31-int LTR ERV1 4170 4209 -727 302 210 136 12 chr13 78451209 78451290 -41293608 + LTR37A LTR ERV1 1 91 -335 994 186 16 78 chr13 78451301 78451543 -41293355 + MER31-int LTR ERV1 4340 4566 -370 1780 181 88 60 chr13 78451576 78452029 -41292869 + MER31B LTR ERV1 1 466 0 2289 83 0 49 chr13 78452763 78453087 -41291811 - AluSc SINE Alu -1 308 1 30 27 0 0 chr13 78453609 78453646 -41291252 + AT_rich Low_complexity Low_complexity 1 37 0 2213 101 31 0 chr13 78453745 78454033 -41290865 + AluSq SINE Alu 1 297 -16 22 35 0 0 chr13 78454801 78454830 -41290068 + AT_rich Low_complexity Low_complexity 1 29 0 259 320 109 34 chr13 78455087 78455234 -41289664 + L2 LINE L2 3115 3272 0 323 333 87 36 chr13 78455742 78456189 -41288709 - L1M4 LINE L1 -3103 3043 2574 1992 232 67 86 chr13 78456297 78457512 -41287386 + L1ME3A LINE L1 4891 6161 -9 28 0 0 0 chr13 78457553 78457581 -41287317 + AT_rich Low_complexity Low_complexity 1 28 0 206 254 0 30 chr13 78457748 78457815 -41287083 + T-rich Low_complexity Low_complexity 2 66 0 1860 148 0 0 chr13 78457996 78458279 -41286619 - AluSx SINE Alu -29 283 1 234 0 0 0 chr13 78458293 78458319 -41286579 + (T)n Simple_repeat Simple_repeat 1 26 0 2051 145 3 10 chr13 78458613 78458924 -41285974 - AluSg SINE Alu -1 309 1 872 192 125 71 chr13 78459071 78459547 -41285351 - MLT1H LTR MaLR -4 545 5 2278 107 3 0 chr13 78461110 78461408 -41283490 + AluSp SINE Alu 1 299 -14 238 328 0 0 chr13 78461482 78461549 -41283349 - L2 LINE L2 0 3272 3206 2603 40 0 3 chr13 78461904 78462201 -41282697 - AluY SINE Alu -15 296 1 256 340 65 52 chr13 78462840 78463131 -41281767 + L2 LINE L2 2540 2834 -480 185 83 28 0 chr13 78463135 78463171 -41281727 + (GTTTG)n Simple_repeat Simple_repeat 3 39 0 318 272 176 60 chr13 78463304 78463554 -41281344 + L2 LINE L2 2994 3272 0 476 243 21 100 chr13 78464446 78464685 -41280213 + L1MC4a LINE L1 5679 5898 -1910 21 0 0 0 chr13 78470802 78470823 -41274075 + GC_rich Low_complexity Low_complexity 1 21 0 31 68 0 0 chr13 78470946 78471005 -41273893 + GC_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr13 78471325 78471347 -41273551 + GC_rich Low_complexity Low_complexity 1 22 0 339 85 0 0 chr13 78471492 78471539 -41273359 + (CCG)n Simple_repeat Simple_repeat 2 48 0 1316 260 141 21 chr13 78473532 78474227 -41270671 + L2 LINE L2 2501 3302 -11 860 251 130 23 chr13 78474237 78474591 -41270307 - L2 LINE L2 -7 3306 2915 3944 172 43 28 chr13 78475313 78476035 -41268863 + MER44D DNA MER2_type 1 605 0 1073 114 0 0 chr13 78476573 78476722 -41268176 + AluSg/x SINE Alu 162 310 -2 1101 205 51 0 chr13 78476879 78477113 -41267785 - MIR SINE MIR -4 258 13 422 202 11 0 chr13 78477155 78477244 -41267654 - MIR SINE MIR -94 168 79 1518 142 9 0 chr13 78477396 78477615 -41267283 - L1PA15 LINE L1 -1 6164 5944 212 330 90 37 chr13 78478123 78478312 -41266586 - MIR SINE MIR -43 219 20 417 264 40 27 chr13 78478314 78478462 -41266436 - MARNA DNA Mariner -41 545 396 * 521 261 76 0 chr13 78478339 78478496 -41266402 + MARNA DNA Mariner 64 232 -354 385 283 91 32 chr13 78479023 78479242 -41265656 + MIR SINE MIR 1 232 -30 228 245 38 0 chr13 78479974 78480027 -41264871 - L2 LINE L2 -14 3258 3204 847 348 112 9 chr13 78480195 78480756 -41264142 + L3 LINE CR1 345 963 -614 224 313 30 0 chr13 78480794 78480861 -41264037 - MIR3 SINE MIR -21 187 119 227 364 16 47 chr13 78480890 78481019 -41263879 + L3 LINE CR1 1053 1177 -400 2063 179 52 0 chr13 78481087 78481434 -41263464 - MLT1A1 LTR MaLR 0 365 1 9707 137 22 8 chr13 78481434 78482310 -41262588 - Tigger2 DNA MER2_type -1049 1669 762 195 42 0 0 chr13 78482310 78482334 -41262564 + (TCTCC)n Simple_repeat Simple_repeat 2 25 0 9707 137 22 8 chr13 78482334 78482980 -41261918 - Tigger2 DNA MER2_type -1956 762 126 11109 103 8 2 chr13 78482993 78484483 -41260415 - THE1B-int LTR MaLR -81 1499 1 2415 127 28 25 chr13 78484483 78484846 -41260052 - THE1B LTR MaLR 0 364 1 196 283 33 17 chr13 78484901 78484961 -41259937 + L3 LINE CR1 1495 1555 -22 1323 183 29 4 chr13 78485487 78485733 -41259165 + L1MC2 LINE L1 6079 6330 -14 363 280 11 11 chr13 78486151 78486244 -41258654 - L2 LINE L2 -18 3254 3162 319 250 358 0 chr13 78486753 78486929 -41257969 - L2 LINE L2 -2096 1218 980 232 250 69 0 chr13 78487564 78487636 -41257262 - MLT1J LTR MaLR -311 200 124 202 222 25 37 chr13 78487993 78488074 -41256824 + (TGAA)n Simple_repeat Simple_repeat 4 83 0 460 281 0 22 chr13 78490475 78490610 -41254288 - MLT1J LTR MaLR 0 511 380 1990 189 147 73 chr13 78490624 78491197 -41253701 - MLT1E1 LTR MaLR 0 654 40 332 227 56 143 chr13 78491211 78491427 -41253471 - MLT1J LTR MaLR -132 379 183 603 230 7 7 chr13 78491446 78491581 -41253317 + MER97a DNA MER1_type? 38 172 -722 28 48 0 0 chr13 78492403 78492445 -41252453 + AT_rich Low_complexity Low_complexity 1 42 0 2596 43 0 3 chr13 78493333 78493637 -41251261 + AluY SINE Alu 1 303 -8 252 0 0 0 chr13 78493775 78493803 -41251095 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 306 0 0 0 chr13 78493802 78493836 -41251062 + (CA)n Simple_repeat Simple_repeat 1 34 0 731 174 26 0 chr13 78494155 78494270 -41250628 + FLAM_C SINE Alu 1 118 -15 450 337 134 14 chr13 78494312 78494677 -41250221 + L2 LINE L2 1732 2140 -1174 388 182 0 0 chr13 78494696 78494762 -41250136 + MER5A DNA MER1_type 4 69 -120 762 111 20 131 chr13 78494769 78494839 -41250059 - MER53 DNA DNA -13 176 100 1988 130 3 23 chr13 78494839 78495139 -41249759 + AluJb SINE Alu 1 294 -18 762 111 20 131 chr13 78495139 78495266 -41249632 - MER53 DNA DNA -89 100 1 458 276 43 0 chr13 78495267 78495383 -41249515 + MER5A DNA MER1_type 63 183 -6 302 261 160 25 chr13 78496284 78496575 -41248323 - MLT1J2 LTR MaLR 0 450 68 423 171 0 0 chr13 78496596 78496666 -41248232 - MLT1A2 LTR MaLR 0 374 305 * 534 184 0 19 chr13 78496660 78496763 -41248135 - MLT1A2 LTR MaLR -273 101 1 570 285 127 7 chr13 78496840 78496955 -41247943 + L2 LINE L2 2215 2315 -999 695 142 8 50 chr13 78496955 78497075 -41247823 - L1PA16 LINE L1 -1 6165 6051 570 285 127 7 chr13 78497075 78497243 -41247655 + L2 LINE L2 2315 2532 -782 778 220 105 25 chr13 78497281 78497481 -41247417 - MER20 DNA MER1_type -3 216 1 2275 131 0 0 chr13 78497552 78497864 -41247034 - AluSx SINE Alu 0 312 1 222 361 68 0 chr13 78498271 78498404 -41246494 + L2 LINE L2 3170 3311 -2 2055 145 0 7 chr13 78498569 78498879 -41246019 + AluSx SINE Alu 1 308 -4 220 238 143 0 chr13 78498939 78499002 -41245896 - L2 LINE L2 -1 3312 3241 298 289 16 70 chr13 78499660 78499788 -41245110 + L2 LINE L2 2948 3068 -204 210 338 25 25 chr13 78499881 78499961 -41244937 - L2 LINE L2 0 3272 3193 1614 108 59 0 chr13 78499975 78500231 -41244667 + L1PBa LINE L1 2143 2287 -936 575 362 91 17 chr13 78500264 78500747 -41244151 - L2 LINE L2 -811 2503 1985 479 292 191 10 chr13 78500758 78500967 -41243931 + MIR SINE MIR 16 262 0 246 326 14 83 chr13 78500975 78501023 -41243875 + L2 LINE L2 3134 3184 -88 1709 185 7 17 chr13 78501023 78501315 -41243583 - AluJo SINE Alu -23 289 1 246 326 14 83 chr13 78501315 78501410 -41243488 + L2 LINE L2 3184 3267 -5 613 304 144 0 chr13 78501567 78501866 -41243032 - L3 LINE CR1 -7 1570 1229 5035 114 14 1 chr13 78501866 78502588 -41242310 + Tigger1 DNA MER2_type 995 1725 -693 8989 131 50 6 chr13 78502596 78505089 -41239809 + L1PB1 LINE L1 124 2929 -3934 5924 115 29 4 chr13 78505077 78506044 -41238854 + L1PB1 LINE L1 5874 6859 -8 * 4520 134 14 21 chr13 78506060 78506653 -41238245 + Tigger1 DNA MER2_type 1712 2301 -117 1778 181 3 10 chr13 78506653 78506951 -41237947 - AluSx SINE Alu -16 296 1 4520 134 14 21 chr13 78506951 78507068 -41237830 + Tigger1 DNA MER2_type 2301 2417 -1 652 140 38 20 chr13 78507113 78507245 -41237653 - MLT1A2 LTR MaLR 0 390 243 206 287 43 53 chr13 78507342 78507436 -41237462 + L3 LINE CR1 1105 1197 -380 385 293 14 57 chr13 78507552 78507692 -41237206 - L3 LINE CR1 -784 793 660 225 345 92 0 chr13 78507717 78507804 -41237094 + MIR3 SINE MIR 77 171 -37 218 296 20 91 chr13 78509071 78509270 -41235628 - L3 LINE CR1 -1094 483 299 437 337 6 18 chr13 78510273 78510439 -41234459 + L2 LINE L2 3107 3270 -43 406 214 26 68 chr13 78510441 78510558 -41234340 - MLT1I LTR MaLR -16 393 282 450 288 91 58 chr13 78511279 78511588 -41233310 + L1MEd LINE L1 52 370 -5749 847 169 64 12 chr13 78511599 78511771 -41233127 + MER53 DNA DNA 4 184 -5 369 257 18 134 chr13 78511783 78511954 -41232944 + L1MEd LINE L1 375 525 -5594 2656 84 0 27 chr13 78512324 78512694 -41232204 + L1PA8 LINE L1 5812 6171 -1 1248 118 98 10 chr13 78512979 78513182 -41231716 - Tigger2 DNA MER2_type -10 2708 2488 2109 113 30 10 chr13 78513401 78513703 -41231195 - Tigger2 DNA MER2_type -1104 1614 1307 204 97 0 0 chr13 78514328 78514359 -41230539 + (TG)n Simple_repeat Simple_repeat 2 32 0 280 139 0 56 chr13 78514363 78514435 -41230463 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 1731 125 9 59 chr13 78514435 78514619 -41230279 - Tigger2 DNA MER2_type -248 2470 2307 2450 132 28 8 chr13 78514619 78514976 -41229922 - THE1B LTR MaLR 0 364 1 1731 125 9 59 chr13 78514976 78515112 -41229786 - Tigger2 DNA MER2_type -411 2307 2166 265 270 35 69 chr13 78515420 78515594 -41229304 + LTR31 LTR ERV1 443 610 -9 11139 137 8 18 chr13 78515606 78516949 -41227949 - Tigger2 DNA MER2_type -519 2199 877 2438 40 3 14 chr13 78516949 78517245 -41227653 + L1PA8 LINE L1 5880 6172 0 11139 137 8 18 chr13 78517245 78517641 -41227257 - Tigger2 DNA MER2_type -1841 877 478 2082 133 35 22 chr13 78517633 78518002 -41226896 - Tigger2 DNA MER2_type -2344 374 1 * 419 268 45 45 chr13 78518156 78518313 -41226585 + MIR SINE MIR 106 262 0 2372 95 0 19 chr13 78518686 78519002 -41225896 + AluSg SINE Alu 1 310 0 518 215 165 57 chr13 78519454 78519612 -41225286 - MER5A DNA MER1_type -2 187 13 864 195 22 16 chr13 78519634 78519819 -41225079 + MER5A DNA MER1_type 4 189 0 717 232 109 19 chr13 78520330 78520541 -41224357 + MIR SINE MIR 31 260 -2 741 183 49 12 chr13 78520904 78521068 -41223830 - MER5B DNA MER1_type 0 178 9 2119 147 0 10 chr13 78521188 78521501 -41223397 - AluSx SINE Alu -2 310 1 234 364 0 0 chr13 78521549 78521615 -41223283 - MER91 DNA MER1_type -4 186 121 645 140 0 0 chr13 78521615 78521715 -41223183 - LTR40b LTR ERVL 0 462 363 2238 123 17 6 chr13 78522349 78522812 -41222086 + MLT2B1 LTR ERVL 1 515 0 2091 152 59 34 chr13 78523777 78524185 -41220713 + MER67C LTR ERV1 293 710 0 184 146 21 21 chr13 78525385 78525433 -41219465 + CT-rich Low_complexity Low_complexity 2 49 0 2560 180 132 12 chr13 78525478 78525818 -41219080 - MER39 LTR ERV1 -17 690 392 2024 140 7 0 chr13 78525818 78526110 -41218788 - AluJb SINE Alu -18 294 1 2560 180 132 12 chr13 78526110 78526348 -41218550 - MER39 LTR ERV1 -315 392 1 1791 107 3 112 chr13 78526470 78526817 -41218081 + AluSx SINE Alu 1 309 -3 880 200 33 0 chr13 78527020 78527170 -41217728 + FRAM SINE Alu 1 155 -11 1557 108 9 17 chr13 78529289 78529521 -41215377 + AluSg/x SINE Alu 83 312 0 267 103 0 0 chr13 78529525 78529564 -41215334 + (GAGAA)n Simple_repeat Simple_repeat 2 40 0 2085 137 3 0 chr13 78530204 78530497 -41214401 + AluSx SINE Alu 1 294 -18 334 227 62 10 chr13 78530578 78530675 -41214223 - L2 LINE L2 0 3272 3171 816 137 0 38 chr13 78530794 78530824 -41214074 - FLAM_C SINE Alu -173 139 109 4960 92 1 9 chr13 78530824 78531489 -41213409 - PABL_A LTR ERV1 0 660 1 816 137 0 38 chr13 78531489 78531589 -41213309 - FLAM_C SINE Alu -203 109 14 1018 144 104 20 chr13 78531637 78531838 -41213060 - MER20 DNA MER1_type 0 219 2 1003 167 75 40 chr13 78532099 78532326 -41212572 + MLT2D LTR ERVL 1 235 -179 1977 149 9 22 chr13 78532985 78533301 -41211597 - AluJo SINE Alu 0 312 1 273 289 12 0 chr13 78533372 78533455 -41211443 - L1ME LINE L1 -437 5684 5601 200 295 57 41 chr13 78534091 78534213 -41210685 + L2 LINE L2 3163 3286 -27 2296 78 3 7 chr13 78534217 78534511 -41210387 + AluY SINE Alu 1 293 -18 210 373 16 0 chr13 78535780 78535906 -41208992 + L2 LINE L2 2305 2432 -882 288 285 76 14 chr13 78535913 78536057 -41208841 + L2 LINE L2 2606 2758 -556 782 168 54 130 chr13 78536338 78536472 -41208426 - MER33 DNA MER1_type -2287 298 155 2065 138 0 14 chr13 78536472 78536769 -41208129 - AluSx SINE Alu -19 293 1 782 168 54 130 chr13 78536769 78536949 -41207949 - MER33 DNA MER1_type -2430 155 8 183 281 69 39 chr13 78537022 78537138 -41207760 - MER5B DNA MER1_type -66 112 8 378 311 132 5 chr13 78537143 78537333 -41207565 + MIR SINE MIR 15 228 -34 1630 203 0 25 chr13 78538089 78538404 -41206494 + AluJb SINE Alu 6 312 0 302 330 46 9 chr13 78538951 78539060 -41205838 - MIR3 SINE MIR -2 206 94 189 107 0 0 chr13 78539288 78539316 -41205582 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 310 132 0 0 chr13 78539748 78539801 -41205097 + L1MC4 LINE L1 7990 8042 0 2420 103 0 0 chr13 78540080 78540390 -41204508 + AluSg SINE Alu 1 310 0 708 243 61 53 chr13 78541339 78541438 -41203460 - MIR SINE MIR -12 250 153 2414 88 0 0 chr13 78541438 78541733 -41203165 - AluSc SINE Alu -14 295 1 192 40 0 0 chr13 78541733 78541758 -41203140 + (TTA)n Simple_repeat Simple_repeat 3 27 0 1901 153 7 0 chr13 78541759 78542046 -41202852 - AluSx SINE Alu -23 289 1 708 243 61 53 chr13 78542046 78542190 -41202708 - MIR SINE MIR -108 154 2 359 182 57 23 chr13 78543673 78543761 -41201137 + MIR SINE MIR 49 139 -123 180 279 0 0 chr13 78543790 78543833 -41201065 - MIR SINE MIR -215 47 5 2188 136 15 51 chr13 78544065 78544454 -41200444 - THE1C LTR MaLR 0 375 1 10554 107 17 32 chr13 78544454 78546058 -41198840 - THE1C-int LTR MaLR 0 1580 1 2357 135 8 13 chr13 78546058 78546435 -41198463 - THE1C LTR MaLR 0 375 1 225 247 69 46 chr13 78546512 78546538 -41198360 + L1MDa LINE L1 2404 2428 -4112 1578 195 17 20 chr13 78546538 78546830 -41198068 + AluJb SINE Alu 1 291 -21 225 247 69 46 chr13 78546830 78546977 -41197921 + L1MDa LINE L1 2428 2581 -3959 3177 226 45 4 chr13 78547010 78547787 -41197111 - L1ME1 LINE L1 -5 6161 5351 617 134 0 0 chr13 78547809 78547906 -41196992 - L1ME1 LINE L1 -861 5285 5189 576 268 172 27 chr13 78547953 78548510 -41196388 + L1MDa LINE L1 2604 3241 -3299 803 199 0 33 chr13 78548510 78548657 -41196241 + FRAM SINE Alu 1 142 -170 6670 19 1 0 chr13 78548657 78549408 -41195490 + L1PA2 LINE L1 5404 6155 0 803 199 0 33 chr13 78549408 78549441 -41195457 + FRAM SINE Alu 142 175 -1 23 0 0 0 chr13 78549491 78549514 -41195384 + AT_rich Low_complexity Low_complexity 1 23 0 317 257 30 0 chr13 78549517 78549618 -41195280 + L1MDa LINE L1 3288 3391 -3149 1366 178 0 29 chr13 78550105 78550121 -41194777 - AluJb SINE Alu -2 310 295 2373 96 0 10 chr13 78550121 78550434 -41194464 - AluSx SINE Alu -2 310 1 1366 178 0 29 chr13 78550434 78550659 -41194239 - AluJb SINE Alu -17 295 76 1572 269 78 19 chr13 78551153 78551681 -41193217 - MER68 LTR ERV1 0 562 4 7330 176 27 29 chr13 78551869 78553937 -41190961 - L1P3 LINE L1 -4341 2120 32 562 148 45 0 chr13 78553937 78554025 -41190873 - THE1B LTR MaLR -80 284 193 3223 64 19 7 chr13 78554025 78554448 -41190450 - L1PA13 LINE L1 -336 5827 5400 21 0 0 0 chr13 78554498 78554519 -41190379 + AT_rich Low_complexity Low_complexity 1 21 0 499 231 12 56 chr13 78554659 78554819 -41190079 - L2 LINE L2 -1 3312 3160 1675 179 3 7 chr13 78555455 78555745 -41189153 + AluJo SINE Alu 1 289 -23 2321 107 3 0 chr13 78555794 78556104 -41188794 + AluSp SINE Alu 1 311 -2 951 214 0 0 chr13 78556603 78556771 -41188127 + FAM SINE Alu 1 168 -7 1744 129 4 40 chr13 78557376 78557648 -41187250 + AluJb SINE Alu 31 292 -20 2172 90 39 0 chr13 78558184 78558463 -41186435 + AluSg SINE Alu 1 290 -20 545 248 98 75 chr13 78559077 78559246 -41185652 + MLT1G LTR MaLR 5 169 -373 1203 163 123 78 chr13 78559246 78559603 -41185295 + MER93b LTR ERV1 1 373 0 545 248 98 75 chr13 78559603 78559887 -41185011 + MLT1G LTR MaLR 169 432 -110 946 191 114 22 chr13 78559890 78560270 -41184628 + LTR49 LTR ERV1 131 594 -1 2373 104 0 3 chr13 78560657 78560965 -41183933 - AluSx SINE Alu -5 307 1 227 226 32 32 chr13 78561218 78561280 -41183618 + MER5A DNA MER1_type 128 189 0 737 213 85 0 chr13 78561288 78561452 -41183446 + MER5B DNA MER1_type 1 178 0 527 224 49 14 chr13 78561474 78561617 -41183281 - MER5B DNA MER1_type -28 150 3 22 35 0 0 chr13 78562187 78562216 -41182682 + AT_rich Low_complexity Low_complexity 1 29 0 370 194 169 62 chr13 78562304 78562464 -41182434 + MER5B DNA MER1_type 1 177 -1 450 0 0 0 chr13 78563062 78563112 -41181786 + (TA)n Simple_repeat Simple_repeat 2 51 0 1661 182 3 20 chr13 78563165 78563461 -41181437 + AluJo SINE Alu 1 291 -21 211 299 0 0 chr13 78563705 78563772 -41181126 + L2 LINE L2 3247 3313 0 227 320 27 0 chr13 78563849 78563924 -41180974 + MIR SINE MIR 42 118 -90 2998 157 47 17 chr13 78564039 78564613 -41180285 + L1MB3 LINE L1 5579 6169 -14 2006 108 0 35 chr13 78564809 78565124 -41179774 + AluSq SINE Alu 1 304 -9 1200 68 0 0 chr13 78565136 78565317 -41179581 + L1PA8 LINE L1 6007 6187 0 356 292 62 14 chr13 78567603 78567747 -41177151 + MIR SINE MIR 38 188 -74 2169 178 74 7 chr13 78567846 78567860 -41177038 - LTR54B LTR ERV1 -6 492 480 1982 117 64 0 chr13 78567860 78568142 -41176756 + AluSx SINE Alu 1 300 -12 2169 178 74 7 chr13 78568142 78568588 -41176310 - LTR54B LTR ERV1 -18 480 1 29 0 0 0 chr13 78568843 78568872 -41176026 + AT_rich Low_complexity Low_complexity 1 29 0 1677 166 41 14 chr13 78568905 78569200 -41175698 + AluJb SINE Alu 1 303 -9 1615 170 17 14 chr13 78569413 78569707 -41175191 + AluJo SINE Alu 1 295 -17 337 180 124 22 chr13 78569735 78569824 -41175074 - Charlie4 DNA MER1_type -28 1933 1836 396 239 111 0 chr13 78569841 78569958 -41174940 + LTR65 LTR ERV1 13 142 -527 845 180 113 0 chr13 78574214 78574364 -41170534 - FAM SINE Alu -8 167 1 1724 140 34 101 chr13 78574367 78574781 -41170117 + LTR65 LTR ERV1 152 537 -132 190 290 19 90 chr13 78574960 78575063 -41169835 + L3 LINE CR1 1270 1360 -217 1921 107 40 24 chr13 78575063 78575361 -41169537 + AluSx SINE Alu 1 303 -9 190 290 19 90 chr13 78575361 78575412 -41169486 + L3 LINE CR1 1360 1413 -164 23 0 0 0 chr13 78577156 78577179 -41167719 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 78577371 78577392 -41167506 + GC_rich Low_complexity Low_complexity 1 21 0 259 172 35 92 chr13 78577974 78578061 -41166837 - MER81 DNA DNA -29 85 4 443 252 49 28 chr13 78578390 78578533 -41166365 + MIR SINE MIR 44 189 -73 203 353 50 22 chr13 78579734 78579873 -41165025 + L2 LINE L2 3168 3310 -3 5436 82 38 48 chr13 78581541 78582372 -41162526 - L1PB1 LINE L1 -3 6148 5325 2139 133 3 0 chr13 78582372 78582680 -41162218 - AluSq SINE Alu -4 309 1 5436 82 38 48 chr13 78582680 78582900 -41161998 - L1PB1 LINE L1 -826 5325 5104 784 208 132 5 chr13 78583190 78583387 -41161511 - MIR SINE MIR -39 223 2 199 246 76 15 chr13 78583563 78583637 -41161261 + MIR SINE MIR 75 151 -62 336 248 18 80 chr13 78583868 78583981 -41160917 - MIR SINE MIR -63 145 40 1609 159 6 80 chr13 78585312 78585638 -41159260 + AluJo SINE Alu 1 302 -10 294 316 105 18 chr13 78587392 78587563 -41157335 - MIR SINE MIR -37 225 40 651 233 148 5 chr13 78587603 78587805 -41157093 + MER5C DNA MER1_type 11 241 -83 1847 135 0 34 chr13 78588259 78588555 -41156343 + AluSx SINE Alu 6 291 -21 2163 106 3 14 chr13 78588895 78589187 -41155711 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr13 78590262 78590287 -41154611 + AT_rich Low_complexity Low_complexity 1 25 0 2055 128 7 0 chr13 78593797 78594087 -41150811 - AluSx SINE Alu -20 292 1 239 293 0 40 chr13 78594308 78594383 -41150515 - MIR SINE MIR -178 84 13 1195 137 0 0 chr13 78594566 78594741 -41150157 - AluSg/x SINE Alu -16 296 122 5670 57 3 3 chr13 78594788 78595502 -41149396 + L1PA7 LINE L1 5441 6154 0 241 160 20 20 chr13 78595582 78595632 -41149266 + MLT1E1 LTR MaLR 1 50 -604 * 1713 235 85 31 chr13 78595600 78596144 -41148754 + MLT1E2 LTR MaLR 10 582 -44 1460 123 174 65 chr13 78596236 78596292 -41148606 + L1MB8 LINE L1 5277 5326 -852 2326 92 0 10 chr13 78596292 78596597 -41148301 + AluSq SINE Alu 1 302 -11 1460 123 174 65 chr13 78596597 78596674 -41148224 + L1MB8 LINE L1 5326 5393 -785 2073 139 0 3 chr13 78596674 78596975 -41147923 + AluJb SINE Alu 1 300 -12 1460 123 174 65 chr13 78596975 78597253 -41147645 + L1MB8 LINE L1 5393 5734 -444 1135 187 56 4 chr13 78597254 78597505 -41147393 + L1MB8 LINE L1 5915 6178 0 242 252 139 9 chr13 78597516 78597631 -41147267 + L1ME LINE L1 5536 5665 -456 2358 81 0 3 chr13 78598013 78598308 -41146590 - AluSc SINE Alu -15 294 1 2873 168 41 65 chr13 78598369 78599072 -41145826 + LTR8 LTR ERV1 1 686 -5 27 29 0 0 chr13 78600824 78600858 -41144040 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 78601236 78601257 -41143641 + AT_rich Low_complexity Low_complexity 1 21 0 198 224 0 0 chr13 78601437 78601486 -41143412 + (TA)n Simple_repeat Simple_repeat 1 49 0 1532 197 24 3 chr13 78601775 78602065 -41142833 - AluJo SINE Alu -16 296 1 25 65 0 0 chr13 78603652 78603698 -41141200 + AT_rich Low_complexity Low_complexity 1 46 0 890 141 47 29 chr13 78604777 78604947 -41139951 + MER5A DNA MER1_type 16 188 -1 536 239 50 6 chr13 78605390 78605570 -41139328 - MER53 DNA DNA 0 189 2 890 145 0 35 chr13 78605965 78606110 -41138788 - FRAM SINE Alu -16 160 21 1204 143 53 10 chr13 78607597 78607806 -41137092 + MER1B DNA MER1_type 54 271 -68 603 273 0 8 chr13 78608046 78608174 -41136724 + MIR SINE MIR 2 128 -134 313 73 0 36 chr13 78608358 78608413 -41136485 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 893 138 69 7 chr13 78608413 78608558 -41136340 - AluJb SINE Alu -31 281 128 252 0 0 0 chr13 78608580 78608608 -41136290 + (TG)n Simple_repeat Simple_repeat 2 29 0 1695 112 131 0 chr13 78610679 78610947 -41133951 + AluJb SINE Alu 5 307 -5 349 329 126 62 chr13 78611693 78612450 -41132448 + L1 LINE L1 530 1334 -5515 23 33 0 0 chr13 78612459 78612489 -41132409 + GC_rich Low_complexity Low_complexity 1 30 0 1154 185 46 82 chr13 78613399 78613702 -41131196 + AluJo SINE Alu 1 292 -10 654 230 22 17 chr13 78614325 78614503 -41130395 - MER97c DNA MER1_type? -911 179 1 1597 183 59 35 chr13 78614555 78614960 -41129938 - L1MC3 LINE L1 -315 7470 7056 353 205 171 71 chr13 78614964 78615174 -41129724 - L1MDa LINE L1 -5058 1061 816 408 235 84 0 chr13 78615187 78615306 -41129592 - L1MDa LINE L1 -5339 780 652 1894 156 10 22 chr13 78615517 78615831 -41129067 + AluJb SINE Alu 1 310 -2 1565 121 31 87 chr13 78615905 78616194 -41128704 + AluJb SINE Alu 30 302 -10 335 234 32 89 chr13 78616889 78617047 -41127851 + MLT1G3-int LTR MaLR 1023 1171 -200 810 244 63 79 chr13 78617063 78617531 -41127367 + MLT1G3 LTR MaLR 42 593 -2 709 350 62 10 chr13 78617538 78617955 -41126943 + L1 LINE L1 3827 4265 -2583 626 190 29 36 chr13 78617980 78618117 -41126781 - FLAM_A SINE Alu 0 142 7 411 316 64 11 chr13 78618134 78618290 -41126608 + L1 LINE L1 4284 4453 -2395 2099 138 40 3 chr13 78618290 78618637 -41126261 + MER46B DNA MER2_type 1 235 -1 411 316 64 11 chr13 78618637 78618667 -41126231 + L1 LINE L1 4453 4480 -2368 193 301 44 82 chr13 78618707 78618840 -41126058 + L2 LINE L2 3090 3216 -97 2207 126 0 0 chr13 78618840 78619150 -41125748 + AluSx SINE Alu 1 310 -2 193 301 44 82 chr13 78619150 78619199 -41125699 + L2 LINE L2 3216 3265 -48 398 117 0 0 chr13 78620134 78620194 -41124704 + MER51A LTR ERV1 15 74 -560 381 259 72 41 chr13 78620510 78620636 -41124262 + MIR SINE MIR 6 149 -63 845 203 0 0 chr13 78620643 78620801 -41124097 + FRAM SINE Alu 7 164 -12 383 311 8 0 chr13 78620803 78620922 -41123976 + MIR SINE MIR 138 257 -5 4519 98 22 3 chr13 78620937 78621559 -41123339 - MER51A LTR ERV1 0 634 1 312 332 21 83 chr13 78621942 78622183 -41122715 - L3 LINE CR1 -83 1494 1269 1603 141 176 38 chr13 78622439 78622809 -41122089 + MSTA LTR MaLR 8 428 0 2313 99 0 3 chr13 78623658 78623961 -41120937 - AluSq SINE Alu -11 302 1 979 208 40 16 chr13 78623961 78624211 -41120687 - L1ME3 LINE L1 -10 6152 5897 180 321 0 0 chr13 78624321 78624377 -41120521 + L2 LINE L2 2579 2634 -680 704 152 109 5 chr13 78624526 78624710 -41120188 - Charlie5 DNA MER1_type 0 2624 2422 211 240 116 39 chr13 78624711 78624801 -41120097 + MIR SINE MIR 114 218 -44 2009 186 59 42 chr13 78624801 78625296 -41119602 - MLT1D LTR MaLR 0 505 3 211 240 116 39 chr13 78625296 78625334 -41119564 + MIR SINE MIR 218 252 -10 975 276 44 6 chr13 78626018 78626381 -41118517 - LTR16B LTR ERVL 0 464 88 855 156 92 23 chr13 78626528 78626701 -41118197 + MER46A DNA MER2_type 38 222 -14 186 260 149 94 chr13 78626750 78626931 -41117967 + MIR SINE MIR 1 191 -71 248 373 18 9 chr13 78627072 78627182 -41117716 - MIR SINE MIR -81 127 17 1738 145 67 20 chr13 78627395 78627692 -41117206 + AluSx SINE Alu 1 311 -1 1965 112 37 3 chr13 78628866 78629160 -41115738 + AluSx SINE Alu 1 304 -8 1898 141 13 13 chr13 78629312 78629611 -41115287 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr13 78629692 78629713 -41115185 + AT_rich Low_complexity Low_complexity 1 21 0 225 206 55 14 chr13 78630865 78630938 -41113960 - L1ME4a LINE L1 0 6121 6046 23 33 0 0 chr13 78631402 78631432 -41113466 + AT_rich Low_complexity Low_complexity 1 30 0 206 225 169 14 chr13 78631760 78631831 -41113067 + MIR SINE MIR 181 262 0 349 326 54 16 chr13 78632262 78632391 -41112507 - L2 LINE L2 -2 3270 3137 329 229 174 0 chr13 78632422 78632531 -41112367 - MIR SINE MIR -19 243 116 293 247 94 0 chr13 78632531 78632616 -41112282 + MIR SINE MIR 97 189 -73 1301 117 98 1 chr13 78632728 78633035 -41111863 + LTR25 LTR ERV1 1 367 -427 * 1785 129 3 3 chr13 78633032 78633319 -41111579 + LTR25 LTR ERV1 508 794 0 1323 182 61 17 chr13 78633342 78633638 -41111260 + MLT1A1 LTR MaLR 56 364 -1 319 259 153 26 chr13 78633782 78633961 -41110937 + MIR SINE MIR 7 217 -45 304 348 69 42 chr13 78634058 78634435 -41110463 + L2 LINE L2 232 618 -2696 724 309 94 24 chr13 78634743 78634884 -41110014 - L1MC4a LINE L1 -1779 6029 5899 1996 126 25 0 chr13 78634884 78635170 -41109728 - AluSx SINE Alu -19 293 1 724 309 94 24 chr13 78635170 78635539 -41109359 - L1MC4a LINE L1 -1909 5899 5483 271 235 0 15 chr13 78636087 78636155 -41108743 + MLT1K LTR MaLR 500 566 -22 21 0 0 0 chr13 78636851 78636872 -41108026 + AT_rich Low_complexity Low_complexity 1 21 0 221 160 0 20 chr13 78637363 78637413 -41107485 + CT-rich Low_complexity Low_complexity 4 52 0 1750 174 3 0 chr13 78637444 78637732 -41107166 - AluJo SINE Alu -23 289 1 1853 151 3 33 chr13 78638081 78638386 -41106512 + AluJb SINE Alu 1 296 -16 270 297 94 16 chr13 78639067 78639195 -41105703 - L2 LINE L2 0 3313 3176 1969 158 0 0 chr13 78639838 78640135 -41104763 - AluJb SINE Alu -15 297 1 419 304 148 21 chr13 78640157 78640496 -41104402 - L2 LINE L2 -967 2347 1966 212 213 64 0 chr13 78641048 78641095 -41103803 - L2 LINE L2 -8 3264 3215 540 0 0 0 chr13 78641334 78641394 -41103504 + (TG)n Simple_repeat Simple_repeat 2 61 0 2378 72 3 10 chr13 78643069 78643374 -41101524 - AluY SINE Alu -8 303 1 2441 86 0 0 chr13 78643939 78644241 -41100657 + AluSg SINE Alu 1 302 -8 388 284 91 51 chr13 78645431 78645628 -41099270 + L1M4 LINE L1 3691 3895 -2251 215 293 0 0 chr13 78645982 78646040 -41098858 - MIR3 SINE MIR -2 206 149 478 244 139 9 chr13 78646127 78646242 -41098656 - MIR SINE MIR -58 150 21 23 33 0 0 chr13 78646595 78646625 -41098273 + AT_rich Low_complexity Low_complexity 1 30 0 250 343 82 15 chr13 78646691 78646825 -41098073 - MIR SINE MIR -116 146 4 2123 121 10 10 chr13 78648510 78648816 -41096082 + AluSq SINE Alu 1 306 -7 204 40 0 0 chr13 78649820 78649845 -41095053 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 30 0 0 0 chr13 78650169 78650199 -41094699 + AT_rich Low_complexity Low_complexity 1 30 0 343 274 280 16 chr13 78651786 78652100 -41092798 - L1MC/D LINE L1 -2072 5736 5340 490 330 54 21 chr13 78652100 78652436 -41092462 - L1MC/D LINE L1 -770 5376 5030 280 234 56 28 chr13 78652537 78652644 -41092254 - L1MC/D LINE L1 -1156 4990 4881 919 210 0 0 chr13 78653161 78653323 -41091575 - FRAM SINE Alu -1 165 4 1193 131 101 5 chr13 78654575 78654773 -41090125 + AluYa5 SINE Alu 1 217 -94 422 20 0 0 chr13 78654773 78654823 -41090075 + AluY SINE Alu 82 131 -180 2184 65 0 41 chr13 78654825 78655115 -41089783 + AluY SINE Alu 17 294 -17 1498 118 26 22 chr13 78655540 78655769 -41089129 - MER30 DNA MER1_type 0 230 1 243 114 0 0 chr13 78655783 78655827 -41089071 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr13 78656047 78656079 -41088819 + AT_rich Low_complexity Low_complexity 1 32 0 195 222 0 0 chr13 78656454 78656499 -41088399 + (TATG)n Simple_repeat Simple_repeat 4 48 0 375 23 0 0 chr13 78656500 78656544 -41088354 + (CA)n Simple_repeat Simple_repeat 1 44 0 361 256 12 0 chr13 78656547 78656629 -41088269 - MIR SINE MIR -70 192 110 483 213 69 25 chr13 78656661 78656821 -41088077 + L1ME1 LINE L1 18 184 -6239 * 4012 236 108 74 chr13 78656807 78657241 -41087657 + L1ME1 LINE L1 3308 3726 -3215 2511 76 0 10 chr13 78657241 78657555 -41087343 + AluY SINE Alu 1 311 0 4012 236 108 74 chr13 78657555 78659775 -41085123 + L1ME1 LINE L1 3726 6052 -889 2019 205 21 24 chr13 78659775 78660161 -41084737 + L1ME1 LINE L1 6470 7014 -115 1841 178 3 0 chr13 78660161 78660464 -41084434 + AluJb SINE Alu 1 304 -8 2019 205 21 24 chr13 78660464 78660580 -41084318 + L1ME1 LINE L1 7014 7129 0 185 348 141 22 chr13 78661400 78661535 -41083363 - L2 LINE L2 -6 3266 3116 251 272 152 48 chr13 78662771 78662896 -41082002 - MIR SINE MIR -88 174 37 1249 163 30 21 chr13 78664867 78665100 -41079798 - MER46A DNA MER2_type 0 236 2 279 139 0 0 chr13 78665911 78665954 -41078944 - Alu SINE Alu -260 43 1 1157 153 93 72 chr13 78666066 78666314 -41078584 + MER47A DNA MER2_type 26 284 -2039 2134 110 10 0 chr13 78666314 78666606 -41078292 - AluSx SINE Alu -17 295 1 1157 153 93 72 chr13 78666606 78666691 -41078207 + MER47A DNA MER2_type 284 366 0 482 139 12 0 chr13 78666711 78666797 -41078101 + (TG)n Simple_repeat Simple_repeat 2 88 0 28 29 0 0 chr13 78666876 78666911 -41077987 + AT_rich Low_complexity Low_complexity 1 35 0 2082 130 0 17 chr13 78666949 78667250 -41077648 - AluJb SINE Alu -16 296 1 250 203 54 68 chr13 78667250 78667324 -41077574 - L1ME3A LINE L1 -62 6108 6036 2215 92 7 0 chr13 78668406 78668711 -41076187 + AluSq SINE Alu 1 307 0 25 0 0 0 chr13 78669089 78669114 -41075784 + AT_rich Low_complexity Low_complexity 1 25 0 2457 69 0 0 chr13 78669193 78669497 -41075401 - AluY SINE Alu -7 304 1 416 268 76 32 chr13 78669927 78670084 -41074814 + MIR SINE MIR 49 212 -50 1561 164 38 4 chr13 78670096 78670359 -41074539 - AluJo SINE Alu -20 292 21 541 266 24 0 chr13 78670436 78670560 -41074338 - L2 LINE L2 0 3313 3187 252 0 0 0 chr13 78671107 78671135 -41073763 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2403 51 3 45 chr13 78671248 78671560 -41073338 - AluY SINE Alu -12 299 1 1253 124 0 5 chr13 78671620 78671806 -41073092 - AluSg/x SINE Alu -9 301 117 261 268 49 12 chr13 78674583 78674665 -41070233 + L3 LINE CR1 635 719 -858 713 103 0 0 chr13 78674940 78675037 -41069861 + AluS SINE Alu 1 97 -216 356 140 0 0 chr13 78675040 78675097 -41069801 + AluS SINE Alu 40 96 -207 1142 225 75 0 chr13 78675097 78675337 -41069561 + AluJo SINE Alu 36 293 -19 608 164 0 52 chr13 78675943 78676059 -41068839 - AluJb SINE Alu -16 296 187 491 152 0 0 chr13 78676059 78676138 -41068760 + Tigger1 DNA MER2_type 2340 2418 0 1079 171 36 60 chr13 78676292 78676304 -41068594 + Tigger3(Golem) DNA MER2_type 2781 2792 -236 2298 93 0 0 chr13 78676304 78676594 -41068304 + AluSc SINE Alu 1 290 -19 1079 171 36 60 chr13 78676594 78676797 -41068101 + Tigger3(Golem) DNA MER2_type 2792 2992 -36 2212 88 3 17 chr13 78676797 78677093 -41067805 - AluSx SINE Alu -20 292 1 1079 171 36 60 chr13 78677093 78677128 -41067770 + Tigger3(Golem) DNA MER2_type 2992 3026 -2 2045 114 3 26 chr13 78677128 78677435 -41067463 - AluSg SINE Alu -10 300 1 180 0 0 0 chr13 78677439 78677459 -41067439 + (T)n Simple_repeat Simple_repeat 1 20 0 1704 192 0 0 chr13 78677557 78677849 -41067049 + AluJb SINE Alu 1 292 -20 816 166 17 17 chr13 78677864 78678045 -41066853 - Tigger1 DNA MER2_type -106 2312 2132 808 101 54 0 chr13 78678051 78678180 -41066718 - AluSc SINE Alu -138 171 36 293 111 22 0 chr13 78678297 78678342 -41066556 - AluSc SINE Alu -255 46 1 404 271 88 59 chr13 78678363 78678533 -41066365 - MER5B DNA MER1_type -1 177 3 2369 97 10 0 chr13 78678647 78678955 -41065943 + AluSx SINE Alu 1 311 -1 2478 51 7 0 chr13 78679037 78679332 -41065566 + AluY SINE Alu 1 297 -14 27 29 0 0 chr13 78679535 78679569 -41065329 + AT_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr13 78679584 78679615 -41065283 + AT_rich Low_complexity Low_complexity 1 31 0 460 278 23 23 chr13 78680035 78680168 -41064730 - MIR SINE MIR -126 136 4 370 214 60 17 chr13 78680274 78680391 -41064507 + Charlie1 DNA MER1_type 2427 2548 -213 320 330 45 9 chr13 78680554 78680666 -41064232 + L2 LINE L2 3152 3267 -5 1095 65 0 22 chr13 78681116 78681254 -41063644 + AluSq/x SINE Alu 1 135 -177 2630 30 0 10 chr13 78681254 78681558 -41063340 + AluY SINE Alu 1 301 -10 211 195 24 0 chr13 78681719 78681760 -41063138 + (CGG)n Simple_repeat Simple_repeat 2 43 0 576 219 0 39 chr13 78682451 78682579 -41062319 + L2 LINE L2 3187 3309 -4 223 267 93 13 chr13 78682600 78682675 -41062223 - MIR SINE MIR -118 144 64 1944 151 4 0 chr13 78682806 78683085 -41061813 + AluSx SINE Alu 15 294 -18 2217 119 0 3 chr13 78683638 78683941 -41060957 + AluSq SINE Alu 1 302 -11 1303 133 87 42 chr13 78684790 78685031 -41059867 - MSTA LTR MaLR 0 428 177 771 238 66 9 chr13 78685199 78685426 -41059472 + MLT1C LTR MaLR 228 467 0 397 191 0 0 chr13 78685428 78685496 -41059402 - L1MC4 LINE L1 -736 7306 7239 510 192 104 33 chr13 78685497 78685641 -41059257 - L1MC4 LINE L1 -957 7085 6924 2320 90 3 3 chr13 78685641 78685940 -41058958 - AluSq SINE Alu -5 308 10 510 192 104 33 chr13 78685940 78685977 -41058921 - L1MC4 LINE L1 -1118 6924 6891 2309 105 0 0 chr13 78686013 78686309 -41058589 - AluSg SINE Alu -14 296 1 225 281 110 0 chr13 78686724 78686806 -41058092 - L1M4b LINE L1 -5453 1406 1316 1979 161 0 0 chr13 78687544 78687843 -41057055 + AluSx SINE Alu 1 299 -13 2699 136 45 51 chr13 78687971 78688200 -41056698 + L1MC3 LINE L1 7244 7473 -312 2384 90 0 0 chr13 78688200 78688499 -41056399 + AluSg SINE Alu 1 299 -11 2699 136 45 51 chr13 78688499 78688797 -41056101 + L1MC3 LINE L1 7473 7768 -17 1695 146 10 65 chr13 78688800 78689109 -41055789 - AluJb SINE Alu -20 292 1 3780 160 64 3 chr13 78689439 78690097 -41054801 - MER44D DNA MER2_type 0 605 36 574 167 0 146 chr13 78690998 78691142 -41053756 + FLAM_A SINE Alu 1 123 -10 1825 169 7 16 chr13 78691217 78691525 -41053373 + AluJb SINE Alu 1 305 -7 244 267 48 19 chr13 78691652 78691757 -41053141 - L1M4 LINE L1 -2680 3466 3359 1629 153 60 11 chr13 78691830 78692111 -41052787 + AluSx SINE Alu 1 295 -17 2108 140 49 15 chr13 78692114 78692520 -41052378 + L1MB3 LINE L1 5764 6183 0 314 195 57 7 chr13 78692630 78692748 -41052150 - L1ME LINE L1 -318 5848 5728 686 74 11 0 chr13 78692852 78692947 -41051951 - AluY SINE Alu -214 97 2 2357 76 26 3 chr13 78693079 78693381 -41051517 - AluY SINE Alu -2 309 1 1986 90 56 8 chr13 78693398 78693665 -41051233 - AluSg SINE Alu -30 280 1 741 232 68 0 chr13 78693868 78694045 -41050853 - MER5A DNA MER1_type 0 189 1 2274 91 3 0 chr13 78694443 78694739 -41050159 + AluY SINE Alu 1 297 -14 2378 96 0 0 chr13 78694744 78695046 -41049852 + AluSq SINE Alu 1 302 -11 1098 103 54 80 chr13 78695076 78695194 -41049704 - L1MB3 LINE L1 -3 6180 6069 2255 100 0 17 chr13 78695194 78695493 -41049405 - AluSx SINE Alu -18 294 1 1098 103 54 80 chr13 78695493 78695598 -41049300 - L1MB3 LINE L1 -114 6069 5963 1711 179 14 10 chr13 78696167 78696463 -41048435 + AluJb SINE Alu 1 297 -15 1347 176 0 0 chr13 78696470 78696692 -41048206 + AluJb SINE Alu 86 307 -5 2397 92 0 3 chr13 78696693 78696996 -41047902 + AluSp SINE Alu 2 303 -10 2193 79 10 10 chr13 78697216 78697528 -41047370 - AluY SINE Alu 0 311 1 1714 197 3 10 chr13 78697529 78697829 -41047069 - AluJo SINE Alu -14 298 1 23 24 0 24 chr13 78697831 78697851 -41047047 + AT_rich Low_complexity Low_complexity 1 20 -20 833 172 23 17 chr13 78697851 78698025 -41046873 + FAM SINE Alu 1 175 0 23 24 0 24 chr13 78698025 78698045 -41046853 + AT_rich Low_complexity Low_complexity 20 40 0 668 188 0 51 chr13 78698535 78698673 -41046225 + FLAM_C SINE Alu 3 133 0 1911 73 4 0 chr13 78698748 78698982 -41045916 - AluSq SINE Alu -78 235 1 219 36 0 0 chr13 78699526 78699554 -41045344 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1717 124 93 0 chr13 78699557 78699816 -41045082 - AluSg SINE Alu -25 285 3 529 120 0 0 chr13 78699828 78699903 -41044995 - AluSq SINE Alu -18 295 221 1012 91 0 0 chr13 78699903 78700024 -41044874 - AluSq SINE Alu -125 188 68 6940 132 76 6 chr13 78700189 78701330 -41043568 - Tigger1 DNA MER2_type -1174 1244 24 2204 136 0 3 chr13 78701423 78701733 -41043165 - AluSx SINE Alu -3 309 1 1922 130 4 7 chr13 78701918 78702194 -41042704 - AluSx SINE Alu -37 275 1 350 124 83 0 chr13 78702350 78702471 -41042427 + (TA)n Simple_repeat Simple_repeat 2 132 0 2196 55 0 0 chr13 78702547 78702801 -41042097 + AluY SINE Alu 25 278 -33 1455 83 6 6 chr13 78703092 78703273 -41041625 + AluSp SINE Alu 103 283 -30 881 163 14 20 chr13 78703299 78703313 -41041585 + AluSg/x SINE Alu 120 133 -177 2263 113 3 0 chr13 78703313 78703613 -41041285 + AluSp SINE Alu 1 301 -12 881 163 14 20 chr13 78703613 78703745 -41041153 + AluSg/x SINE Alu 133 265 -45 379 313 139 14 chr13 78703917 78704125 -41040773 - MIR SINE MIR -23 239 6 208 337 75 25 chr13 78704125 78704407 -41040491 - L2 LINE L2 -1153 2161 1866 275 157 0 48 chr13 78704680 78704712 -41040186 + A-rich Low_complexity Low_complexity 5 37 -46 2076 93 14 24 chr13 78704712 78705003 -41039895 + AluSq SINE Alu 1 288 -25 275 157 0 48 chr13 78705003 78705053 -41039845 + A-rich Low_complexity Low_complexity 37 83 0 1776 152 23 19 chr13 78705070 78705379 -41039519 + AluJo SINE Alu 1 310 -2 278 203 14 14 chr13 78706102 78706171 -41038727 - L2 LINE L2 -2571 743 675 463 205 0 0 chr13 78707163 78707246 -41037652 + FRAM/FAM SINE Alu 1 78 -98 2370 117 0 0 chr13 78707441 78707750 -41037148 - AluSg SINE Alu -1 309 1 2337 113 0 0 chr13 78708932 78709241 -41035657 - AluSq SINE Alu -4 309 1 909 118 0 22 chr13 78709244 78709380 -41035518 - AluSq/x SINE Alu -180 133 1 1306 128 0 0 chr13 78709425 78709605 -41035293 - AluSg/x SINE Alu -13 297 118 488 306 68 37 chr13 78709727 78710110 -41034788 - L1MC4a LINE L1 -260 7548 7154 1657 162 50 20 chr13 78710114 78710417 -41034481 - AluJb SINE Alu 0 312 1 315 238 43 49 chr13 78710572 78710736 -41034162 - L1MCa LINE L1 -3952 2474 2312 1390 188 53 14 chr13 78710739 78711021 -41033877 - AluJo SINE Alu -7 305 13 2006 100 29 4 chr13 78711096 78711375 -41033523 - AluSx SINE Alu -22 290 5 1226 106 75 11 chr13 78711392 78711580 -41033318 - AluSg/x SINE Alu -4 308 109 350 123 0 0 chr13 78711676 78711733 -41033165 - AluSc SINE Alu 0 299 243 277 51 0 26 chr13 78711738 78711777 -41033121 - Alu SINE Alu -23 279 242 1412 144 5 0 chr13 78711928 78712150 -41032748 - AluSg/x SINE Alu -25 287 65 285 314 70 23 chr13 78712161 78712333 -41032565 + L2 LINE L2 2686 2865 -449 189 338 14 0 chr13 78712317 78712391 -41032507 + L2 LINE L2 2991 3065 -248 * 23 0 0 0 chr13 78712395 78712418 -41032480 + AT_rich Low_complexity Low_complexity 1 23 0 243 79 0 0 chr13 78712458 78712496 -41032402 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 1096 144 0 0 chr13 78712496 78712649 -41032249 - AluSg/x SINE Alu -26 286 134 2407 102 0 0 chr13 78712649 78712952 -41031946 - AluSp SINE Alu -9 304 2 1596 180 78 0 chr13 78712953 78713237 -41031661 - AluSx SINE Alu -6 306 1 380 277 0 0 chr13 78713727 78713810 -41031088 + MER3 DNA MER1_type 1 83 -126 993 207 42 19 chr13 78713913 78714126 -41030772 + AluJo SINE Alu 1 218 -94 368 185 15 0 chr13 78714128 78714193 -41030705 + AluJb SINE Alu 90 155 -147 305 44 22 0 chr13 78714304 78714349 -41030549 - AluY SINE Alu -256 46 1 1748 138 25 0 chr13 78714351 78714634 -41030264 + L1MC1 LINE L1 5577 5866 -467 2222 105 0 0 chr13 78714634 78714928 -41029970 - AluSg SINE Alu -16 294 1 684 174 0 0 chr13 78714966 78715075 -41029823 - FLAM_C SINE Alu -33 110 2 1511 108 44 0 chr13 78715154 78715357 -41029541 + AluSg/x SINE Alu 86 297 -13 22 35 0 0 chr13 78716983 78717012 -41027886 + AT_rich Low_complexity Low_complexity 1 29 0 2098 112 7 3 chr13 78717168 78717454 -41027444 - AluSq SINE Alu -26 287 1 200 360 22 0 chr13 78717579 78717668 -41027230 + L2 LINE L2 3182 3272 0 208 194 16 81 chr13 78718301 78718363 -41026535 + MIR SINE MIR 68 125 -137 23 0 0 0 chr13 78718575 78718598 -41026300 + GC_rich Low_complexity Low_complexity 1 23 0 2306 77 0 0 chr13 78718616 78718888 -41026010 - AluSp SINE Alu -41 272 1 2203 101 20 0 chr13 78718894 78719190 -41025708 - AluSp SINE Alu -11 302 1 737 122 9 9 chr13 78719328 78719467 -41025431 + AluSc SINE Alu 168 306 0 1908 115 76 7 chr13 78719491 78719779 -41025119 - AluSp SINE Alu -5 308 1 267 275 44 0 chr13 78719786 78719877 -41025021 + MIR SINE MIR 166 260 -2 1964 130 0 3 chr13 78719914 78720251 -41024647 - AluJb SINE Alu 0 336 1 496 317 26 56 chr13 78720303 78720606 -41024292 + L2 LINE L2 2545 2838 -476 1871 188 0 3 chr13 78720685 78720989 -41023909 - AluJb SINE Alu -9 303 1 2167 115 41 0 chr13 78721093 78721388 -41023510 - AluSx SINE Alu -5 307 1 316 263 40 0 chr13 78721388 78721464 -41023434 + L2 LINE L2 3190 3268 -4 3314 158 69 2 chr13 78721529 78722150 -41022748 - L1MB4 LINE L1 -2 6178 5516 294 125 0 0 chr13 78722154 78722202 -41022696 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 625 235 0 0 chr13 78722223 78722342 -41022556 - AluJb SINE Alu -45 267 149 1088 166 12 57 chr13 78722381 78722562 -41022336 - L1MB4 LINE L1 -705 5479 5310 1731 136 92 0 chr13 78722562 78722834 -41022064 + AluSx SINE Alu 7 303 -9 1088 166 12 57 chr13 78722834 78722999 -41021899 - L1MB4 LINE L1 -874 5310 5139 649 253 64 45 chr13 78723256 78723458 -41021440 + MIR SINE MIR 2 207 -55 327 207 60 40 chr13 78723458 78723608 -41021290 + L1M4 LINE L1 3024 3176 -2970 * 1133 138 18 28 chr13 78723607 78723825 -41021073 + L1MB3 LINE L1 5926 6141 -42 2226 121 0 16 chr13 78723826 78724141 -41020757 + AluSg SINE Alu 1 310 0 2393 106 0 0 chr13 78724152 78724464 -41020434 + AluSx SINE Alu 1 312 0 1913 161 0 0 chr13 78724483 78724763 -41020135 + AluJo SINE Alu 6 285 -27 21 57 0 0 chr13 78724891 78724926 -41019972 + AT_rich Low_complexity Low_complexity 1 35 0 2444 50 40 10 chr13 78725144 78725441 -41019457 + AluSx SINE Alu 2 307 -5 310 259 0 0 chr13 78725522 78725603 -41019295 - AluSc SINE Alu -82 217 137 507 250 125 49 chr13 78726610 78726874 -41018024 + MER102a DNA MER1_type 32 315 -15 1971 94 38 21 chr13 78726961 78727164 -41017734 - AluY SINE Alu 0 311 124 204 40 0 0 chr13 78727164 78727189 -41017709 + (TG)n Simple_repeat Simple_repeat 2 26 0 1971 94 38 21 chr13 78727189 78727300 -41017598 - AluY SINE Alu -187 124 16 1740 155 3 43 chr13 78727359 78727663 -41017235 - AluJo SINE Alu -19 293 2 22 0 0 0 chr13 78727703 78727725 -41017173 + AT_rich Low_complexity Low_complexity 1 22 0 436 289 75 40 chr13 78727857 78728235 -41016663 - L1M4 LINE L1 -1520 4626 4230 873 216 98 5 chr13 78728235 78728439 -41016459 + MER58A DNA MER1_type 2 224 0 436 289 75 40 chr13 78728439 78728486 -41016412 - L1M4 LINE L1 -1916 4230 4186 204 122 0 73 chr13 78728495 78728515 -41016383 + (TTCA)n Simple_repeat Simple_repeat 3 20 -20 2132 135 0 0 chr13 78728515 78728812 -41016086 - AluSx SINE Alu -15 297 1 204 122 0 73 chr13 78728812 78728832 -41016066 + (TTCA)n Simple_repeat Simple_repeat 20 40 0 543 293 40 84 chr13 78729267 78729428 -41015470 + MIR SINE MIR 2 148 -114 2334 69 7 26 chr13 78729428 78729731 -41015167 + AluSp SINE Alu 1 297 -16 543 293 40 84 chr13 78729731 78729842 -41015056 + MIR SINE MIR 148 262 0 291 307 18 31 chr13 78730296 78730325 -41014573 + MER103 DNA DNA 5 33 -133 2141 96 13 17 chr13 78730325 78730627 -41014271 - AluY SINE Alu -10 301 1 291 307 18 31 chr13 78730627 78730760 -41014138 + MER103 DNA DNA 33 165 -1 2318 117 0 0 chr13 78731090 78731477 -41013421 + AluY SINE Alu 1 387 0 336 306 0 0 chr13 78731902 78732000 -41012898 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 2402 93 0 10 chr13 78732459 78732772 -41012126 - AluSx SINE Alu -2 310 1 389 321 64 11 chr13 78732945 78732975 -41011923 - L1M4 LINE L1 -2368 3778 3751 2169 138 40 3 chr13 78732975 78733322 -41011576 - MER46B DNA MER2_type -1 235 1 389 321 64 11 chr13 78733322 78733478 -41011420 - L1M4 LINE L1 -2395 3751 3582 632 179 30 37 chr13 78733495 78733632 -41011266 + FLAM_A SINE Alu 10 142 0 709 350 62 10 chr13 78733657 78734074 -41010824 - L1M4 LINE L1 -2583 3563 3125 581 295 118 22 chr13 78734081 78734403 -41010495 - MLT1G1 LTR MaLR -2 593 241 338 270 45 27 chr13 78734917 78735028 -41009870 - MIR SINE MIR -12 250 138 2511 70 0 0 chr13 78735169 78735468 -41009430 + AluY SINE Alu 1 299 -12 512 246 47 95 chr13 78735523 78735540 -41009358 - L2 LINE L2 0 3313 3297 1614 170 17 7 chr13 78735540 78735828 -41009070 - AluJo SINE Alu -17 295 5 512 246 47 95 chr13 78735828 78736021 -41008877 - L2 LINE L2 -16 3297 3113 2144 86 10 13 chr13 78736021 78736322 -41008576 + AluSc SINE Alu 1 300 -9 349 67 33 33 chr13 78736924 78736984 -41007914 + Alu SINE Alu 242 301 -1 2389 80 0 0 chr13 78737002 78737301 -41007597 + AluY SINE Alu 3 301 -10 704 198 0 0 chr13 78737324 78737445 -41007453 + FRAM SINE Alu 24 144 -32 2137 127 0 0 chr13 78737445 78737737 -41007161 - AluSx SINE Alu -20 292 1 2263 81 7 3 chr13 78737750 78738046 -41006852 - AluY SINE Alu -14 297 1 781 200 28 6 chr13 78738085 78738265 -41006633 + L1M4 LINE L1 3926 4109 -2037 1402 140 9 9 chr13 78738289 78738517 -41006381 + MER1B DNA MER1_type 43 270 -69 1770 214 104 21 chr13 78738542 78739148 -41005750 + L1M4 LINE L1 4113 4768 -1378 1568 108 0 0 chr13 78739171 78739374 -41005524 - AluSg/x SINE Alu -15 297 95 1617 253 55 41 chr13 78740172 78740405 -41004493 - L2 LINE L2 0 3313 3085 2280 100 13 0 chr13 78740405 78740705 -41004193 - AluSx SINE Alu -8 304 1 1617 253 55 41 chr13 78740705 78741248 -41003650 - L2 LINE L2 -228 3085 2530 780 198 41 50 chr13 78741254 78741496 -41003402 - L1MC4 LINE L1 0 8042 7803 665 146 46 46 chr13 78741502 78741653 -41003245 - MLT1B LTR MaLR 0 390 240 588 238 32 0 chr13 78741656 78741782 -41003116 - AluJb SINE Alu -45 267 138 3247 151 12 35 chr13 78741882 78741973 -41002925 - L1P5 LINE L1 -377 5774 5682 2297 85 7 0 chr13 78741973 78742268 -41002630 - AluSg SINE Alu -13 297 1 3247 151 12 35 chr13 78742268 78743119 -41001779 - L1P5 LINE L1 -469 5682 4847 1117 136 20 0 chr13 78743127 78743326 -41001572 + L1P5 LINE L1 4613 4815 -1331 2159 141 0 0 chr13 78743427 78743733 -41001165 - AluSx SINE Alu -6 306 1 1081 218 166 20 chr13 78743795 78744204 -41000694 - L1ME1 LINE L1 -5 6161 5693 1238 134 0 30 chr13 78744204 78744405 -41000493 - AluSg/x SINE Alu -9 303 109 877 156 0 94 chr13 78744450 78744630 -41000268 - AluYa5 SINE Alu -14 297 135 1603 88 37 9 chr13 78744829 78745046 -40999852 + AluSg/x SINE Alu 88 310 0 2100 106 7 30 chr13 78745059 78745362 -40999536 + AluSq SINE Alu 1 296 -17 4078 153 19 3 chr13 78745704 78746436 -40998462 + Tigger2 DNA MER2_type 1 744 -1974 966 160 0 19 chr13 78746487 78746643 -40998255 - AluJo SINE Alu -159 153 1 817 109 0 23 chr13 78746672 78746800 -40998098 + FLAM_C SINE Alu 1 125 -8 23 0 0 0 chr13 78746803 78746826 -40998072 + AT_rich Low_complexity Low_complexity 1 23 0 627 121 101 0 chr13 78747069 78747168 -40997730 + AluSg/x SINE Alu 181 289 -21 264 30 0 0 chr13 78747168 78747201 -40997697 + (CA)n Simple_repeat Simple_repeat 2 34 0 1802 260 110 48 chr13 78747206 78747691 -40997207 - L2 LINE L2 -109 3204 2751 2473 86 0 0 chr13 78747691 78747992 -40996906 - AluSx SINE Alu -10 302 2 1802 260 110 48 chr13 78747992 78748376 -40996522 - L2 LINE L2 -562 2751 2260 431 126 69 0 chr13 78748376 78748463 -40996435 - L1MB8 LINE L1 -19 6159 6067 1802 260 110 48 chr13 78748463 78748592 -40996306 - L2 LINE L2 -1053 2260 2140 3959 197 45 5 chr13 78748598 78749419 -40995479 + MER21B LTR ERV1 1 854 -9 2465 45 0 0 chr13 78750938 78751226 -40993672 + AluY SINE Alu 1 288 -23 237 65 0 0 chr13 78751880 78751911 -40992987 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 2294 95 0 3 chr13 78752724 78753029 -40991869 - AluSc SINE Alu -5 304 1 283 200 17 0 chr13 78753087 78753147 -40991751 + AluS SINE Alu 2 62 -238 2289 68 0 7 chr13 78753956 78754250 -40990648 + AluSq SINE Alu 1 292 -21 234 0 0 0 chr13 78755166 78755192 -40989706 + (CGG)n Simple_repeat Simple_repeat 2 27 0 445 251 148 116 chr13 78756603 78756981 -40987917 - L2 LINE L2 0 3313 2924 1286 187 0 68 chr13 78756983 78757277 -40987621 - AluJo SINE Alu -38 274 1 1516 123 78 0 chr13 78757325 78757593 -40987305 - L1MC1 LINE L1 0 6333 6045 227 30 0 30 chr13 78759654 78759687 -40985211 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 1178 68 0 0 chr13 78759687 78759835 -40985063 - L1PA8 LINE L1 -18 6154 6007 2220 113 3 0 chr13 78759847 78760149 -40984749 - AluSp SINE Alu -10 303 1 493 130 0 36 chr13 78760149 78760232 -40984666 - L1P LINE L1 -763 5403 5319 2345 65 17 0 chr13 78760232 78760523 -40984375 - AluY SINE Alu -15 296 1 2066 119 7 0 chr13 78760524 78760810 -40984088 - AluSx SINE Alu -19 293 6 493 130 0 36 chr13 78760810 78760836 -40984062 - L1P LINE L1 -846 5320 5304 2265 118 3 0 chr13 78761156 78761453 -40983445 + AluSx SINE Alu 1 298 -14 423 316 124 29 chr13 78763252 78763523 -40981375 + L2 LINE L2 2705 3027 -286 2161 103 3 0 chr13 78763523 78763805 -40981093 + AluSg SINE Alu 1 283 -27 423 316 124 29 chr13 78763805 78763973 -40980925 + L2 LINE L2 3027 3178 -135 2272 104 0 0 chr13 78764846 78765143 -40979755 + AluSg SINE Alu 1 297 -13 251 300 25 25 chr13 78765169 78765249 -40979649 - MER5A DNA MER1_type 0 189 110 548 253 137 32 chr13 78765473 78765663 -40979235 - MIR SINE MIR 0 262 53 551 256 54 103 chr13 78765679 78765902 -40978996 + MIR SINE MIR 47 258 -4 21 36 0 0 chr13 78766137 78766165 -40978733 + AT_rich Low_complexity Low_complexity 1 28 0 2354 38 41 0 chr13 78766304 78766594 -40978304 - AluY SINE Alu -9 302 1 501 17 0 0 chr13 78768503 78768561 -40976337 + (CA)n Simple_repeat Simple_repeat 2 59 0 210 219 0 0 chr13 78768718 78768782 -40976116 + (TA)n Simple_repeat Simple_repeat 1 64 0 532 248 4 16 chr13 78768799 78768964 -40975934 + L1MC5 LINE L1 6720 6884 -924 442 243 240 6 chr13 78769052 78769389 -40975509 + L1MC5 LINE L1 7490 7905 -56 653 179 81 0 chr13 78770717 78770840 -40974058 + AluJo SINE Alu 1 133 -169 632 323 167 21 chr13 78771720 78772252 -40972646 - L2 LINE L2 -975 2339 1730 251 294 24 12 chr13 78772436 78772521 -40972377 + CT-rich Low_complexity Low_complexity 5 90 0 1104 129 25 6 chr13 78772711 78772874 -40972024 + AluJo SINE Alu 129 294 -18 28 71 0 0 chr13 78773154 78773210 -40971688 + AT_rich Low_complexity Low_complexity 1 56 0 1290 154 9 27 chr13 78773559 78773780 -40971118 - AluJb SINE Alu -11 301 85 1433 186 72 11 chr13 78773804 78774083 -40970815 + AluJb SINE Alu 1 296 -16 837 181 60 0 chr13 78774083 78774232 -40970666 + AluJb SINE Alu 134 291 -21 22 0 0 0 chr13 78774237 78774259 -40970639 + AT_rich Low_complexity Low_complexity 1 22 0 184 200 0 73 chr13 78775535 78775590 -40969308 + L2 LINE L2 3263 3313 0 23 33 0 0 chr13 78775883 78775913 -40968985 + AT_rich Low_complexity Low_complexity 1 30 0 201 74 0 0 chr13 78776353 78776380 -40968518 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1769 215 156 65 chr13 78778525 78778915 -40965983 + LTR1B LTR ERV1 1 354 -472 2628 56 0 0 chr13 78778915 78779220 -40965678 + AluY SINE Alu 1 305 -6 1769 215 156 65 chr13 78779220 78779586 -40965312 + LTR1B LTR ERV1 354 826 0 2276 67 0 79 chr13 78780099 78780427 -40964471 + AluSg SINE Alu 1 302 -8 28 0 0 0 chr13 78781469 78781497 -40963401 + AT_rich Low_complexity Low_complexity 1 28 0 23 86 0 0 chr13 78782046 78782104 -40962794 + AT_rich Low_complexity Low_complexity 1 58 0 333 300 105 35 chr13 78783140 78783340 -40961558 - L3 LINE CR1 -113 1464 1251 237 330 70 0 chr13 78783428 78783528 -40961370 + MIR SINE MIR 95 201 -61 503 307 82 22 chr13 78783689 78783920 -40960978 - L3 LINE CR1 -406 1171 927 710 254 80 9 chr13 78784517 78784730 -40960168 + MIR SINE MIR 8 235 -27 2042 136 0 0 chr13 78785177 78785464 -40959434 + AluSx SINE Alu 1 287 -25 246 81 0 0 chr13 78785467 78785504 -40959394 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1833 151 7 20 chr13 78786760 78787058 -40957840 + AluJb SINE Alu 7 300 -12 4655 239 78 29 chr13 78789144 78790017 -40954881 + L1M4 LINE L1 2419 3248 -2898 2167 112 16 0 chr13 78790017 78790320 -40954578 + AluSx SINE Alu 3 310 -2 4655 239 78 29 chr13 78790320 78791084 -40953814 + L1M4 LINE L1 3248 4135 -2011 22 70 0 0 chr13 78792298 78792341 -40952557 + AT_rich Low_complexity Low_complexity 1 43 0 296 89 0 22 chr13 78792438 78792483 -40952415 - L1MC4 LINE L1 -134 7908 7865 1495 193 30 17 chr13 78792925 78793221 -40951677 - AluJb SINE Alu -12 300 1 620 129 0 0 chr13 78794205 78794306 -40950592 - L1MB3 LINE L1 0 6183 6083 23 0 0 0 chr13 78794651 78794674 -40950224 + AT_rich Low_complexity Low_complexity 1 23 0 1785 139 68 17 chr13 78796240 78796534 -40948364 + AluJb SINE Alu 3 311 -1 33 43 0 0 chr13 78797118 78797165 -40947733 + AT_rich Low_complexity Low_complexity 1 47 0 182 172 0 0 chr13 78797490 78797519 -40947379 - L2 LINE L2 -15 3298 3270 361 309 128 25 chr13 78797585 78797789 -40947109 + MIR SINE MIR 32 256 -6 207 0 0 0 chr13 78797844 78797867 -40947031 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2084 117 13 7 chr13 78797872 78798181 -40946717 - AluSx SINE Alu -1 311 1 1130 222 105 19 chr13 78798628 78798894 -40946004 + AluJb SINE Alu 2 290 -12 758 6 101 0 chr13 78798894 78799053 -40945845 + (TA)n Simple_repeat Simple_repeat 2 176 0 990 264 44 0 chr13 78799079 78799306 -40945592 + MIR SINE MIR 18 254 -8 241 248 38 0 chr13 78801164 78801269 -40943629 + (TATATG)n Simple_repeat Simple_repeat 3 111 0 390 338 132 0 chr13 78801294 78801430 -40943468 - MER91A DNA MER1_type -2 194 41 774 292 115 16 chr13 78801617 78802059 -40942839 - L1MC4a LINE L1 -1882 5995 5510 273 330 17 8 chr13 78802646 78802764 -40942134 - L1MC4a LINE L1 -6186 210 92 433 295 85 19 chr13 78802828 78803099 -40941799 - L1MEd LINE L1 -3175 2954 2666 688 265 65 26 chr13 78803226 78803464 -40941434 + MLT1H LTR MaLR 13 302 -247 338 260 89 4 chr13 78803490 78803619 -40941279 + MLT1H LTR MaLR 428 549 0 237 312 65 0 chr13 78803629 78803722 -40941176 - L1MEd LINE L1 -3601 2528 2430 554 283 87 51 chr13 78803850 78804383 -40940515 - L1MEd LINE L1 -4719 1591 997 393 265 145 15 chr13 78804623 78804823 -40940075 - L1MEd LINE L1 -5236 883 658 313 244 192 51 chr13 78804839 78804995 -40939903 - MIR3 SINE MIR -11 197 20 1763 163 3 20 chr13 78805478 78805779 -40939119 - AluJb SINE Alu -15 297 2 383 252 55 47 chr13 78806861 78806988 -40937910 - MIR SINE MIR -122 140 13 28 61 0 0 chr13 78807708 78807757 -40937141 + AT_rich Low_complexity Low_complexity 1 49 0 703 224 81 11 chr13 78809220 78809394 -40935504 - MER20 DNA MER1_type -33 186 1 728 164 0 25 chr13 78809421 78809543 -40935355 - FRAM SINE Alu -19 157 39 207 354 137 6 chr13 78809922 78810083 -40934815 + L2 LINE L2 2394 2575 -739 310 180 0 0 chr13 78810152 78810202 -40934696 - AluSp/q SINE Alu -35 268 219 1507 84 0 5 chr13 78810302 78810492 -40934406 - AluSx SINE Alu -123 189 1 244 371 110 15 chr13 78811281 78811553 -40933345 + L2 LINE L2 2325 2622 -692 440 279 26 13 chr13 78811698 78811852 -40933046 - Tigger8 DNA MER2_type -183 483 328 486 304 53 18 chr13 78811919 78812090 -40932808 - Tigger8 DNA MER2_type -451 215 39 286 314 81 54 chr13 78812124 78812309 -40932589 + L2 LINE L2 2628 2817 -497 315 351 41 99 chr13 78812403 78812768 -40932130 + L2 LINE L2 2927 3270 -2 212 281 0 49 chr13 78813701 78813783 -40931115 + GA-rich Low_complexity Low_complexity 4 81 0 21 36 0 0 chr13 78813882 78813910 -40930988 + AT_rich Low_complexity Low_complexity 1 28 0 231 275 0 14 chr13 78815271 78815340 -40929558 + CT-rich Low_complexity Low_complexity 4 71 0 341 255 61 20 chr13 78818102 78818200 -40926698 + L2 LINE L2 3210 3311 -2 21 0 0 0 chr13 78819513 78819534 -40925364 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr13 78820217 78820281 -40924617 + AT_rich Low_complexity Low_complexity 1 64 0 22 70 0 0 chr13 78820833 78820876 -40924022 + AT_rich Low_complexity Low_complexity 1 43 0 484 289 84 30 chr13 78822073 78822239 -40922659 - L2 LINE L2 -6 3307 3133 * 848 243 186 14 chr13 78822237 78822603 -40922295 - L2 LINE L2 -1073 2241 1813 22 35 0 0 chr13 78822641 78822670 -40922228 + AT_rich Low_complexity Low_complexity 1 29 0 883 205 6 6 chr13 78824583 78824749 -40920149 - FAM SINE Alu -9 166 1 32 26 0 0 chr13 78824859 78824898 -40920000 + AT_rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr13 78825383 78825417 -40919481 + AT_rich Low_complexity Low_complexity 1 34 0 26 82 0 0 chr13 78827206 78827267 -40917631 + AT_rich Low_complexity Low_complexity 1 61 0 2303 48 41 3 chr13 78827280 78827570 -40917328 + AluY SINE Alu 1 301 -10 706 246 32 16 chr13 78828382 78828569 -40916329 - MIR SINE MIR -54 208 19 375 279 50 50 chr13 78828964 78829143 -40915755 + MIR SINE MIR 4 182 -80 22 35 0 0 chr13 78829944 78829973 -40914925 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr13 78832487 78832523 -40912375 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr13 78833420 78833446 -40911452 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 103 chr13 78834589 78834628 -40910270 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 201 121 0 0 chr13 78835287 78835320 -40909578 + (TA)n Simple_repeat Simple_repeat 1 33 0 970 236 5 14 chr13 78836115 78836335 -40908563 + AluJo SINE Alu 1 218 -94 420 37 0 0 chr13 78836368 78836422 -40908476 + (CA)n Simple_repeat Simple_repeat 2 55 0 462 270 112 17 chr13 78838028 78838206 -40906692 + MIR SINE MIR 19 213 -49 1918 132 9 52 chr13 78839115 78839440 -40905458 + AluSx SINE Alu 1 311 -1 319 214 68 29 chr13 78839870 78839973 -40904925 - L1MC5 LINE L1 -316 7645 7539 2071 116 51 0 chr13 78840704 78840997 -40903901 - AluSg1 SINE Alu -1 308 1 362 366 56 25 chr13 78841029 78841349 -40903549 + L2 LINE L2 677 1006 -2308 805 153 0 0 chr13 78842349 78842467 -40902431 + AluJo/FLAM SINE Alu 1 118 -184 2089 106 20 3 chr13 78842469 78842762 -40902136 - AluSx SINE Alu -14 298 1 23 33 0 0 chr13 78842954 78842984 -40901914 + AT_rich Low_complexity Low_complexity 1 30 0 572 299 141 0 chr13 78846186 78846370 -40898528 + MIR SINE MIR 1 210 -52 437 217 22 65 chr13 78846711 78846813 -40898085 + MER103 DNA DNA 33 129 -37 1336 189 4 0 chr13 78846813 78847046 -40897852 + MER46A DNA MER2_type 1 234 -2 437 217 22 65 chr13 78847046 78847081 -40897817 + MER103 DNA DNA 129 164 -2 2421 187 64 50 chr13 78847242 78847738 -40897160 + MLT2B3 LTR ERVL 1 507 -47 1730 171 81 0 chr13 78847738 78848059 -40896839 - MER7A DNA MER2_type -1 345 1 2421 187 64 50 chr13 78848059 78848108 -40896790 + MLT2B3 LTR ERVL 507 554 0 229 277 314 5 chr13 78848123 78848311 -40896587 - L2 LINE L2 0 3272 3027 1781 292 155 11 chr13 78848738 78849652 -40895246 + L2 LINE L2 1252 2297 -1017 232 277 52 19 chr13 78850377 78850532 -40894366 + L1MB7 LINE L1 4903 5062 -1084 285 289 199 17 chr13 78850651 78851223 -40893675 + L1MB7 LINE L1 5256 5929 -255 416 351 5 32 chr13 78852019 78852204 -40892694 + L3 LINE CR1 1034 1213 -364 437 199 28 43 chr13 78852219 78852360 -40892538 + Zaphod DNA AcHobo 2042 2180 -1851 196 333 61 69 chr13 78852366 78852612 -40892286 + L2 LINE L2 687 930 -2384 225 299 227 36 chr13 78852964 78853268 -40891630 + L2 LINE L2 1454 1815 -1499 375 309 107 45 chr13 78853359 78853537 -40891361 + MER5A DNA MER1_type 1 189 0 663 314 169 42 chr13 78853537 78854129 -40890769 + L2 LINE L2 2116 2782 -532 757 193 0 0 chr13 78854386 78854526 -40890372 - FLAM_C SINE Alu -1 142 3 22 0 0 0 chr13 78855296 78855318 -40889580 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 78855656 78855677 -40889221 + AT_rich Low_complexity Low_complexity 1 21 0 383 273 9 17 chr13 78855998 78856123 -40888775 - MIR SINE MIR -67 141 38 34 0 0 0 chr13 78856177 78856211 -40888687 + AT_rich Low_complexity Low_complexity 1 34 0 210 333 0 14 chr13 78856912 78856981 -40887917 + L2 LINE L2 3198 3265 -7 30 45 0 0 chr13 78857341 78857385 -40887513 + AT_rich Low_complexity Low_complexity 1 44 0 192 356 27 108 chr13 78858628 78858962 -40885936 - L2 LINE L2 0 3272 2966 221 164 49 66 chr13 78859030 78859091 -40885807 - L2 LINE L2 -13 3300 3241 659 277 88 27 chr13 78859096 78859392 -40885506 - L2 LINE L2 -1433 1881 1568 1515 197 0 51 chr13 78859396 78859691 -40885207 + AluJo SINE Alu 3 282 -30 308 97 103 0 chr13 78859693 78859848 -40885050 + (TA)n Simple_repeat Simple_repeat 1 171 0 414 244 330 0 chr13 78859852 78860049 -40884849 - L2 LINE L2 -1737 1577 1316 218 266 131 87 chr13 78860190 78860465 -40884433 - L2 LINE L2 -475 2839 2553 1008 132 107 49 chr13 78860491 78860696 -40884202 + AluJo SINE Alu 83 299 -13 29 47 0 0 chr13 78860937 78860980 -40883918 + AT_rich Low_complexity Low_complexity 1 43 0 251 218 318 0 chr13 78861223 78861327 -40883571 - MIR3 SINE MIR -32 176 40 4468 120 44 32 chr13 78861327 78862427 -40882471 - MER11A LTR ERVK 0 1071 1 229 299 35 23 chr13 78862479 78862566 -40882332 - L3 LINE CR1 -8 1569 1482 1883 160 46 9 chr13 78862643 78862968 -40881930 + MER1B DNA MER1_type 1 337 0 2225 100 34 0 chr13 78863140 78863431 -40881467 + AluY SINE Alu 1 301 -10 295 223 85 11 chr13 78863537 78863631 -40881267 - L1MC4a LINE L1 -502 7306 7206 24 0 0 0 chr13 78864355 78864379 -40880519 + AT_rich Low_complexity Low_complexity 1 24 0 1567 199 7 3 chr13 78864382 78864673 -40880225 - AluJb SINE Alu -15 297 6 32 26 0 0 chr13 78864837 78864876 -40880022 + AT_rich Low_complexity Low_complexity 1 39 0 924 130 37 12 chr13 78865231 78865393 -40879505 + L1PA15 LINE L1 6000 6165 0 13119 121 14 4 chr13 78868947 78871046 -40873852 + L1P LINE L1 2020 4139 -2007 27 0 0 0 chr13 78872985 78873012 -40871886 + AT_rich Low_complexity Low_complexity 1 27 0 2185 136 123 5 chr13 78873069 78873452 -40871446 + MSTA LTR MaLR 1 428 0 2544 52 0 10 chr13 78874148 78874456 -40870442 - AluY SINE Alu -6 305 1 2817 13 0 0 chr13 78874505 78874815 -40870083 - AluYa5 SINE Alu -1 310 1 7105 60 0 3 chr13 78874817 78875906 -40868992 - L1PA7 LINE L1 0 6154 5066 212 314 14 0 chr13 78876322 78876392 -40868506 + L2 LINE L2 2365 2435 -879 1456 193 48 15 chr13 78876394 78876731 -40868167 + MLT1A1 LTR MaLR 1 348 -17 400 326 66 106 chr13 78876743 78877243 -40867655 + L2 LINE L2 2435 2914 -400 1044 206 5 14 chr13 78877282 78877501 -40867397 - AluJo SINE Alu -15 297 81 2170 109 0 0 chr13 78877509 78877806 -40867092 - AluSg SINE Alu 0 306 10 411 295 23 8 chr13 78877844 78877973 -40866925 + L2 LINE L2 3142 3272 0 28838 125 14 75 chr13 78878417 78882235 -40862663 - L1P LINE L1 -924 5537 2164 2092 128 0 28 chr13 78882235 78882554 -40862344 - AluSg SINE Alu 0 310 1 28838 125 14 75 chr13 78882554 78884296 -40860602 - L1P LINE L1 -4297 2164 317 1120 95 0 1 chr13 78884365 78884522 -40860376 - L1P3 LINE L1 -5990 471 1 321 26 0 0 chr13 78884702 78884740 -40860158 + (CA)n Simple_repeat Simple_repeat 2 39 0 860 183 59 81 chr13 78885077 78885350 -40859548 - L1MC3 LINE L1 0 7785 7519 709 266 41 0 chr13 78885350 78885519 -40859379 - Tigger2 DNA MER2_type -1 2717 2542 337 352 88 58 chr13 78885891 78886425 -40858473 - L1M2 LINE L1 -6295 554 5 31255 98 12 57 chr13 78886435 78892880 -40852018 + L1PA6 LINE L1 11 6153 -1 2204 161 8 0 chr13 78892999 78893379 -40851519 - L1MC1 LINE L1 -5 6328 5946 518 247 100 21 chr13 78893834 78894024 -40850874 + MIR SINE MIR 48 252 -10 833 152 78 29 chr13 78894026 78894230 -40850668 - MER20 DNA MER1_type -5 214 1 2169 132 0 6 chr13 78894921 78895268 -40849630 - AluSq SINE Alu 0 313 1 29 70 0 0 chr13 78895268 78895325 -40849573 + AT_rich Low_complexity Low_complexity 1 57 0 857 209 0 0 chr13 78895372 78895525 -40849373 - AluJb SINE Alu -24 288 136 418 121 0 0 chr13 78895573 78895631 -40849267 - FRAM/FAM SINE Alu -115 61 4 21 0 0 0 chr13 78897071 78897092 -40847806 + AT_rich Low_complexity Low_complexity 1 21 0 227 294 20 0 chr13 78897385 78897436 -40847462 - L2 LINE L2 -20 3252 3201 1299 171 29 0 chr13 78897438 78897643 -40847255 + AluSg/x SINE Alu 89 299 -11 270 133 0 0 chr13 78897738 78897783 -40847115 + AluSc SINE Alu 247 291 -8 1865 170 3 0 chr13 78897803 78898103 -40846795 + AluSx SINE Alu 1 301 -11 1770 153 29 16 chr13 78898543 78898851 -40846047 - AluJo SINE Alu 0 312 1 429 281 50 55 chr13 78899025 78899224 -40845674 - L2 LINE L2 -1 3312 3115 686 269 62 11 chr13 78899433 78899642 -40845256 - MIR SINE MIR -60 202 3 28 0 0 0 chr13 78899940 78899968 -40844930 + GC_rich Low_complexity Low_complexity 1 28 0 648 125 0 0 chr13 78900472 78900576 -40844322 + FRAM SINE Alu 67 170 -6 2237 118 0 0 chr13 78900592 78900889 -40844009 + AluSx SINE Alu 1 297 -15 194 259 0 86 chr13 78901009 78901090 -40843808 - L2 LINE L2 0 3272 3199 433 324 72 7 chr13 78901382 78901521 -40843377 + MIR SINE MIR 7 154 -108 249 184 0 0 chr13 78901529 78901567 -40843331 + Alu SINE Alu 2 39 -264 37 86 0 0 chr13 78901893 78901986 -40842912 + AT_rich Low_complexity Low_complexity 1 93 0 2108 115 0 25 chr13 78902395 78902709 -40842189 + AluSx SINE Alu 6 311 -1 883 195 48 5 chr13 78902709 78902919 -40841979 + LTR47B LTR ERVL 18 236 -207 1872 163 3 7 chr13 78903230 78903519 -40841379 + AluJb SINE Alu 1 288 -24 465 19 0 0 chr13 78903519 78903573 -40841325 + (TG)n Simple_repeat Simple_repeat 2 55 0 2168 104 9 25 chr13 78903914 78904231 -40840667 + AluSx SINE Alu 1 312 0 610 151 0 0 chr13 78904322 78904415 -40840483 - AluJb SINE Alu -63 249 157 601 129 11 0 chr13 78904419 78904512 -40840386 + LTR39 LTR ERV1 224 317 -466 362 168 42 32 chr13 78904645 78904740 -40840158 - L1MB7 LINE L1 0 6184 6089 1984 117 57 0 chr13 78905274 78905557 -40839341 - AluSx SINE Alu -13 299 1 709 198 184 39 chr13 78905570 78905907 -40838991 - L1MD2 LINE L1 -2 6357 5897 248 349 6 57 chr13 78906383 78906450 -40838448 - L2 LINE L2 -666 2648 2579 878 214 31 58 chr13 78906450 78906674 -40838224 + MER20 DNA MER1_type 2 219 0 248 349 6 57 chr13 78906674 78906781 -40838117 - L2 LINE L2 -735 2579 2483 261 333 82 25 chr13 78906891 78907050 -40837848 - L2 LINE L2 -830 2484 2317 207 69 0 0 chr13 78907431 78907460 -40837438 + (ATG)n Simple_repeat Simple_repeat 2 30 0 333 267 58 2 chr13 78908411 78908546 -40836352 + MIR SINE MIR 33 173 -55 390 74 0 0 chr13 78908807 78908861 -40836037 + (CA)n Simple_repeat Simple_repeat 2 55 0 309 288 17 42 chr13 78910434 78910552 -40834346 + MIR SINE MIR 7 121 -141 4310 64 4 0 chr13 78910671 78911232 -40833666 + L1PA7 LINE L1 5592 6154 0 2679 17 0 0 chr13 78911234 78911531 -40833367 + AluYa5 SINE Alu 1 297 -14 668 300 88 11 chr13 78911972 78912232 -40832666 + MLT1J LTR MaLR 2 281 -230 1413 214 106 37 chr13 78912269 78912703 -40832195 + MLT1D LTR MaLR 20 483 -22 5918 219 14 10 chr13 78912864 78914731 -40830167 - L1MC/D LINE L1 -743 5403 3698 1718 165 35 15 chr13 78915171 78915511 -40829387 + MER7A DNA MER2_type 2 346 0 255 310 0 0 chr13 78915607 78915678 -40829220 + L2 LINE L2 3201 3271 -1 248 300 130 10 chr13 78915687 78915810 -40829088 - MIR SINE MIR -60 148 13 276 30 0 0 chr13 78916921 78916954 -40827944 + (TG)n Simple_repeat Simple_repeat 2 34 0 361 237 10 10 chr13 78917472 78917569 -40827329 + L1MC3 LINE L1 7184 7280 -505 11755 102 0 19 chr13 78917572 78919392 -40825506 + L1P LINE L1 751 2536 -3610 193 331 203 7 chr13 78919891 78920039 -40824859 + MIR SINE MIR 9 185 -77 281 389 70 37 chr13 78920180 78920450 -40824448 + L2 LINE L2 2993 3271 -1 233 213 0 0 chr13 78922737 78922784 -40822114 + CT-rich Low_complexity Low_complexity 3 49 0 411 270 0 0 chr13 78922934 78923034 -40821864 - L1ME LINE L1 -565 5599 5500 379 332 119 5 chr13 78923158 78923360 -40821538 + L2 LINE L2 2118 2342 -972 252 260 31 16 chr13 78923651 78923778 -40821120 - L1ME LINE L1 -239 5882 5754 328 311 30 30 chr13 78923788 78923955 -40820943 - L1ME LINE L1 -1724 4422 4256 2777 223 66 22 chr13 78924316 78925177 -40819721 - L1MC3 LINE L1 0 7785 6887 182 261 152 11 chr13 78925323 78925415 -40819483 + MIR SINE MIR 147 251 -11 610 280 65 19 chr13 78926005 78926266 -40818632 - MLT1J2 LTR MaLR -175 275 3 618 273 53 26 chr13 78926517 78926821 -40818077 - L1ME3A LINE L1 -213 5957 5646 347 271 50 77 chr13 78928237 78928418 -40816480 + MIR SINE MIR 53 228 -34 262 229 31 83 chr13 78929470 78929566 -40815332 + L1PA15-16 LINE L1 1473 1563 -5286 763 226 25 28 chr13 78929570 78932182 -40812716 + L1PB4 LINE L1 1353 4202 -2647 17650 67 10 1 chr13 78932288 78935559 -40809339 + L1PA6 LINE L1 2882 6175 0 360 165 0 143 chr13 78936880 78937013 -40807885 - Charlie7 DNA MER1_type -2 2610 2497 2301 122 8 25 chr13 78939023 78939418 -40805480 - L1MA8 LINE L1 -283 6008 5621 244 171 24 0 chr13 78939702 78939784 -40805114 + (TA)n Simple_repeat Simple_repeat 2 85 0 308 125 16 0 chr13 78939816 78939880 -40805018 + T-rich Low_complexity Low_complexity 4 68 0 227 275 14 0 chr13 78941593 78941662 -40803236 + MIR3 SINE MIR 126 195 -13 2159 108 3 10 chr13 78941998 78942303 -40802595 + AluSp SINE Alu 1 303 -10 193 324 0 15 chr13 78942617 78942685 -40802213 - L2 LINE L2 0 3272 3206 863 198 19 33 chr13 78942692 78942904 -40801994 - MER3 DNA MER1_type 0 209 1 1422 189 20 93 chr13 78943138 78943535 -40801363 - MLT1A2 LTR MaLR 0 374 7 1186 237 23 6 chr13 78943780 78944134 -40800764 - L1MCa LINE L1 -3168 3258 2899 2770 160 36 36 chr13 78944148 78944951 -40799947 - L1MCa LINE L1 -3991 2435 1543 * 5401 195 43 14 chr13 78944948 78946213 -40798685 - L1MCa LINE L1 -5105 1321 20 279 330 55 64 chr13 78947020 78947256 -40797642 + L2 LINE L2 2952 3185 -87 276 157 0 0 chr13 78948031 78948082 -40796816 + L1PB4 LINE L1 4462 4512 -2337 1945 150 36 14 chr13 78948087 78948448 -40796450 + THE1C LTR MaLR 7 375 0 5232 78 33 0 chr13 78948487 78949251 -40795647 + L1PA12 LINE L1 5373 6161 -7 4393 149 28 5 chr13 78949254 78950066 -40794832 + L1PB4 LINE L1 6018 6848 -11 1085 194 0 24 chr13 78950081 78950287 -40794611 + AluJo SINE Alu 96 296 -16 1231 176 35 44 chr13 78950879 78950916 -40793982 - LTR45B LTR ERV1 -132 357 321 3372 79 22 5 chr13 78950916 78951361 -40793537 - MLT2A2 LTR ERVL 0 453 1 1231 176 35 44 chr13 78951361 78951632 -40793266 - LTR45B LTR ERV1 -168 321 3 464 262 110 7 chr13 78951665 78951810 -40793088 - MIR SINE MIR -101 161 2 2860 65 35 5 chr13 78953954 78954352 -40790546 - L1PA8 LINE L1 0 6172 5763 2178 105 3 0 chr13 78954423 78954717 -40790181 + AluSq SINE Alu 18 312 -1 21 0 0 0 chr13 78954910 78954931 -40789967 + AT_rich Low_complexity Low_complexity 1 21 0 269 204 0 19 chr13 78954993 78955047 -40789851 - FLAM_A SINE Alu -14 119 67 3370 61 0 0 chr13 78957948 78958373 -40786525 - L1PA5 LINE L1 -11 6143 5719 285 326 91 29 chr13 78960418 78960593 -40784305 - L2 LINE L2 -530 2784 2599 24 0 0 0 chr13 78962063 78962087 -40782811 + AT_rich Low_complexity Low_complexity 1 24 0 1403 155 38 125 chr13 78962466 78962866 -40782032 + MLT1A1 LTR MaLR 1 365 0 270 95 0 0 chr13 78962867 78962909 -40781989 + (CA)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr13 78963101 78963129 -40781769 + AT_rich Low_complexity Low_complexity 1 28 0 631 346 109 31 chr13 78963241 78964104 -40780794 - L2 LINE L2 -1 3271 2324 243 347 0 49 chr13 78964240 78964384 -40780514 + MLT1J2 LTR MaLR 51 187 -263 261 230 86 75 chr13 78964426 78964613 -40780285 + MLT1J1 LTR MaLR 253 441 -5 1214 199 37 15 chr13 78964681 78965133 -40779765 - MLT1D LTR MaLR 0 505 1 488 318 195 34 chr13 78965134 78966475 -40778423 - L2 LINE L2 -1142 2172 616 1725 156 46 21 chr13 78966929 78967269 -40777629 - MLT1A1 LTR MaLR -12 445 1 248 312 136 40 chr13 78967956 78968041 -40776857 + MIR3 SINE MIR 48 150 -58 2288 188 48 30 chr13 78968041 78968537 -40776361 - MLT1D LTR MaLR 0 505 1 248 312 136 40 chr13 78968537 78968576 -40776322 + MIR3 SINE MIR 150 184 -24 192 40 0 0 chr13 78969774 78969799 -40775099 + (TG)n Simple_repeat Simple_repeat 2 26 0 2251 84 0 0 chr13 78970195 78970509 -40774389 - AluY SINE Alu 0 314 1 198 252 39 87 chr13 78971915 78971960 -40772938 - L2 LINE L2 -2 3270 3224 1030 163 126 8 chr13 78971960 78972206 -40772692 - ORSL DNA AcHobo 0 275 1 198 252 39 87 chr13 78972206 78972263 -40772635 - L2 LINE L2 -48 3224 3173 2307 143 78 5 chr13 78972926 78973325 -40771573 + MSTA LTR MaLR 1 428 0 371 256 62 101 chr13 78973470 78973599 -40771299 - L2 LINE L2 -5 3267 3144 2182 116 3 0 chr13 78973624 78973951 -40770947 - LTR1 LTR ERV1 0 785 458 294 79 0 0 chr13 78974608 78974646 -40770252 - U2 snRNA snRNA -150 38 1 500 163 57 35 chr13 78976320 78976461 -40768437 + MER103 DNA DNA 10 153 -13 718 182 88 0 chr13 78976462 78976621 -40768277 - MER63A DNA MER1_type 0 210 38 1410 237 61 43 chr13 78976670 78977160 -40767738 - MLT1D LTR MaLR 0 505 7 234 239 0 0 chr13 78978956 78979027 -40765871 + (TA)n Simple_repeat Simple_repeat 1 71 0 1821 157 0 14 chr13 78979225 78979511 -40765387 + AluSx SINE Alu 6 287 -25 2779 116 36 0 chr13 78980473 78980886 -40764012 + MSTA LTR MaLR 1 428 0 1485 231 88 14 chr13 78981239 78981698 -40763200 + MLT1G LTR MaLR 5 543 -33 16166 184 38 38 chr13 78982310 78986727 -40758171 - L1P3 LINE L1 -1890 4571 52 3115 184 33 32 chr13 78986950 78987857 -40757041 + L1MB3 LINE L1 5062 5969 -214 2270 102 0 3 chr13 78987857 78988152 -40756746 + AluSc SINE Alu 1 294 -15 3115 184 33 32 chr13 78988152 78988163 -40756735 + L1MB3 LINE L1 5969 5978 -205 606 205 159 7 chr13 78988784 78988935 -40755963 - MER63A DNA MER1_type 0 210 37 2040 115 0 56 chr13 78989008 78989329 -40755569 + AluSx SINE Alu 1 303 -9 347 298 161 18 chr13 78989806 78990024 -40754874 - MIR SINE MIR -12 250 2 391 280 70 45 chr13 78991106 78991294 -40753604 - MIR SINE MIR -42 220 30 24 111 0 0 chr13 78991789 78991897 -40753001 + AT_rich Low_complexity Low_complexity 1 108 0 616 284 157 23 chr13 78992427 78992815 -40752083 + L3 LINE CR1 423 862 -715 237 190 138 0 chr13 78993965 78994023 -40750875 + MIR SINE MIR 173 238 -24 249 372 18 9 chr13 78994126 78994239 -40750659 - MIR SINE MIR -147 115 2 273 330 48 10 chr13 78994543 78994646 -40750252 + MIR3 SINE MIR 71 177 -31 44 20 0 0 chr13 78994663 78994714 -40750184 + AT_rich Low_complexity Low_complexity 1 51 0 213 308 31 0 chr13 78995478 78995543 -40749355 - MIR3 SINE MIR -19 189 123 1216 264 87 72 chr13 78997833 78998211 -40746687 + L1MB7 LINE L1 2913 3284 -2862 1957 152 0 3 chr13 78998211 78998501 -40746397 - AluSx SINE Alu -21 291 3 1216 264 87 72 chr13 78998501 78999367 -40745531 + L1MB7 LINE L1 3284 4175 -1971 423 58 159 0 chr13 78999426 78999495 -40745403 + MADE1 DNA Mariner 1 80 0 * 1478 159 16 0 chr13 78999495 78999750 -40745148 + Tigger7 DNA MER2_type 2225 2483 -8 543 281 158 10 chr13 78999750 79000156 -40744742 + L1MB7 LINE L1 4202 4667 -1479 794 158 97 18 chr13 79000906 79001071 -40743827 - MER45A DNA AcHobo 0 178 1 373 274 66 33 chr13 79003159 79003400 -40741498 - L1MC4a LINE L1 -1884 5924 5676 22 70 0 0 chr13 79004381 79004424 -40740474 + AT_rich Low_complexity Low_complexity 1 43 0 4309 176 11 27 chr13 79004424 79005131 -40739767 + L1MB7 LINE L1 5311 6003 -181 859 178 97 144 chr13 79005131 79005514 -40739384 - MLT1A1 LTR MaLR 0 365 1 4309 176 11 27 chr13 79005514 79005689 -40739209 + L1MB7 LINE L1 6003 6179 -5 200 328 30 0 chr13 79006382 79006449 -40738449 - MIR SINE MIR -37 225 157 718 296 82 99 chr13 79006462 79006905 -40737993 + L1MEd LINE L1 96 524 -5595 2072 120 24 0 chr13 79006905 79007197 -40737701 - AluSx SINE Alu -13 299 1 718 296 82 99 chr13 79007197 79007482 -40737416 + L1MEd LINE L1 524 812 -5307 323 259 54 20 chr13 79007614 79007761 -40737137 + L1MEd LINE L1 2634 2785 -3344 468 277 62 6 chr13 79007835 79008012 -40736886 - L1ME LINE L1 -438 5732 5546 379 294 75 11 chr13 79008249 79008436 -40736462 - L1ME LINE L1 -2266 5542 5344 274 331 247 10 chr13 79008716 79009173 -40735725 - L2 LINE L2 -4 3309 2750 235 239 30 30 chr13 79009712 79009779 -40735119 - MIR SINE MIR -70 192 126 206 268 54 0 chr13 79009788 79009844 -40735054 + MIR SINE MIR 105 163 -99 294 274 234 0 chr13 79010770 79010894 -40734004 + MIR SINE MIR 95 247 -15 913 177 79 10 chr13 79014156 79014359 -40730539 - MER20 DNA MER1_type -2 217 1 273 29 0 0 chr13 79014809 79014843 -40730055 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr13 79015702 79015723 -40729175 + AT_rich Low_complexity Low_complexity 1 21 0 320 347 60 12 chr13 79015976 79016227 -40728671 + L1ME LINE L1 5555 5817 -304 32 26 0 0 chr13 79016451 79016490 -40728408 + AT_rich Low_complexity Low_complexity 1 39 0 2239 117 0 0 chr13 79016500 79016798 -40728100 - AluSx SINE Alu -14 298 1 1889 143 61 28 chr13 79016944 79017307 -40727591 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr13 79017849 79017877 -40727021 + AT_rich Low_complexity Low_complexity 1 28 0 506 224 224 0 chr13 79017895 79018047 -40726851 + MER5A DNA MER1_type 2 187 -2 554 286 33 0 chr13 79019119 79019301 -40725597 - MER5A DNA MER1_type 0 189 2 291 313 24 66 chr13 79019343 79019509 -40725389 + MLT1L LTR MaLR 1 159 -456 323 261 76 25 chr13 79019776 79019895 -40725003 + MLT1L LTR MaLR 412 536 -79 356 182 11 0 chr13 79019932 79020020 -40724878 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 298 351 116 32 chr13 79020340 79020919 -40723979 + L2 LINE L2 2634 3256 -57 277 246 58 0 chr13 79021066 79021135 -40723763 - MIR SINE MIR -98 164 92 21 0 0 0 chr13 79022055 79022076 -40722822 + AT_rich Low_complexity Low_complexity 1 21 0 670 336 20 26 chr13 79022079 79022430 -40722468 + L1MC/D LINE L1 5306 5654 -2154 2536 62 13 0 chr13 79022445 79022752 -40722146 + AluSp SINE Alu 1 311 -2 1427 176 68 61 chr13 79022986 79023413 -40721485 + MSTB1 LTR MaLR 1 430 -2 15114 129 18 10 chr13 79023920 79026319 -40718579 + Tigger1 DNA MER2_type 1 2418 0 4560 68 8 10 chr13 79026783 79027396 -40717502 + L1PA10 LINE L1 5545 6156 -12 22 56 0 0 chr13 79027524 79027560 -40717338 + AT_rich Low_complexity Low_complexity 1 36 0 827 191 96 110 chr13 79028177 79028532 -40716366 + MLT1D LTR MaLR 1 350 -155 331 154 0 0 chr13 79028538 79028590 -40716308 + MLT1E2 LTR MaLR 565 616 -10 2273 129 14 0 chr13 79029144 79029493 -40715405 + L1PA15 LINE L1 5811 6164 -1 2473 88 0 0 chr13 79030250 79030557 -40714341 + AluSq SINE Alu 2 308 -5 354 304 90 50 chr13 79030726 79030927 -40713971 + MIR SINE MIR 35 243 -19 342 297 31 56 chr13 79031013 79031208 -40713690 - L1ME4a LINE L1 -48 6073 5884 27 29 0 0 chr13 79031445 79031479 -40713419 + AT_rich Low_complexity Low_complexity 1 34 0 225 146 0 42 chr13 79032428 79032476 -40712422 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 735 285 145 28 chr13 79033180 79033608 -40711290 + MLT1J LTR MaLR 3 480 -31 718 295 78 4 chr13 79033982 79034226 -40710672 - MIR SINE MIR 0 262 1 2303 97 7 0 chr13 79034738 79035037 -40709861 + AluSx SINE Alu 3 303 -9 2111 125 0 7 chr13 79035052 79035355 -40709543 + AluSx SINE Alu 5 305 -7 1609 236 56 21 chr13 79035421 79035853 -40709045 + L2 LINE L2 1732 2178 -1136 226 128 51 0 chr13 79035967 79036006 -40708892 - MER117 DNA MER1_type -35 162 122 288 0 0 0 chr13 79036223 79036255 -40708643 + (CA)n Simple_repeat Simple_repeat 2 33 0 1272 144 86 8 chr13 79036477 79036720 -40708178 - LTR1 LTR ERV1 -523 262 1 1220 244 102 8 chr13 79036731 79037113 -40707785 - LTR52 LTR ERVL -3 418 1 331 157 26 35 chr13 79038105 79038220 -40706678 + GA-rich Low_complexity Low_complexity 3 116 0 208 0 0 0 chr13 79039152 79039175 -40705723 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2177 80 0 24 chr13 79039175 79039463 -40705435 - AluY SINE Alu -1 303 1 36080 90 4 13 chr13 79040641 79046840 -40698058 + L1PA6 LINE L1 11 6149 -5 253 284 43 60 chr13 79047048 79047164 -40697734 - MIR3 SINE MIR -6 202 89 26 93 0 0 chr13 79047220 79047295 -40697603 + AT_rich Low_complexity Low_complexity 1 75 0 234 62 0 0 chr13 79047759 79047791 -40697107 + (TA)n Simple_repeat Simple_repeat 2 33 0 223 228 51 13 chr13 79152091 79152170 -40592728 - L2 LINE L2 -32 3240 3159 413 296 74 6 chr13 79153094 79153249 -40591649 + MIR SINE MIR 43 207 -55 258 164 180 0 chr13 79153255 79153316 -40591582 - L2 LINE L2 -19 3253 3182 290 237 15 0 chr13 79154157 79154241 -40590657 - MIR SINE MIR -108 100 38 1038 205 51 0 chr13 79165020 79165215 -40579683 + MER3 DNA MER1_type 3 207 -2 287 250 83 0 chr13 79165661 79165745 -40579153 - L2 LINE L2 -9 3263 3173 1896 145 7 20 chr13 79166766 79167069 -40577829 + AluJo SINE Alu 1 299 -13 6249 100 30 19 chr13 79167149 79167841 -40577057 - L1MA2 LINE L1 0 6304 5621 2367 74 0 19 chr13 79167841 79168152 -40576746 - AluY SINE Alu -6 305 1 2304 107 0 0 chr13 79168152 79168461 -40576437 - AluSq SINE Alu -4 309 1 6249 100 30 19 chr13 79168461 79168924 -40575974 - L1MA2 LINE L1 -682 5622 5133 810 176 0 7 chr13 79168989 79169142 -40575756 - L1MA10 LINE L1 0 6334 6183 183 318 174 23 chr13 79169516 79169648 -40575250 - L3 LINE CR1 -157 1420 1269 1503 169 94 0 chr13 79169944 79170210 -40574688 - AluJo SINE Alu -21 291 1 211 290 101 0 chr13 79171086 79171155 -40573743 - MIR SINE MIR -79 183 108 2098 101 35 0 chr13 79171160 79171447 -40573451 - AluSg SINE Alu -13 297 1 2144 116 3 7 chr13 79171453 79171756 -40573142 - AluSq SINE Alu -11 302 1 207 336 237 0 chr13 79174068 79174199 -40570699 - MIR SINE MIR -79 183 22 181 293 86 0 chr13 79174796 79174854 -40570044 - L2 LINE L2 -285 2987 2925 193 293 173 0 chr13 79178819 79178952 -40565946 - L2 LINE L2 -825 2489 2334 320 324 40 34 chr13 79182135 79182283 -40562615 - L2 LINE L2 -2 3270 3122 404 312 41 24 chr13 79182438 79182608 -40562290 - MLT1G1 LTR MaLR -279 316 144 366 224 24 0 chr13 79182668 79182753 -40562145 + MLT1H1 LTR MaLR 6 92 -463 557 311 112 59 chr13 79183459 79183651 -40561247 - L1ME4a LINE L1 -1 6120 5940 1020 199 0 0 chr13 79183651 79183817 -40561081 - AluJo/FRAM SINE Alu 0 302 137 1815 106 0 120 chr13 79183820 79183988 -40560910 - AluSx SINE Alu -2 300 113 279 0 0 0 chr13 79183988 79184019 -40560879 + (TG)n Simple_repeat Simple_repeat 2 32 0 1815 106 0 120 chr13 79184019 79184054 -40560844 - AluSx SINE Alu -189 113 75 1791 111 92 0 chr13 79184054 79184316 -40560582 - AluSg SINE Alu -24 286 1 1815 106 0 120 chr13 79184316 79184452 -40560446 - AluSx SINE Alu -227 75 1 557 311 112 59 chr13 79184452 79184560 -40560338 - L1ME4a LINE L1 -182 5939 5800 1936 147 10 3 chr13 79184560 79184867 -40560031 - AluJb SINE Alu -3 309 1 249 310 130 0 chr13 79185128 79185228 -40559670 + L2 LINE L2 2804 2916 -356 1283 217 75 6 chr13 79185723 79186069 -40558829 - L1MC4 LINE L1 -960 7082 6713 2452 66 0 0 chr13 79186170 79186475 -40558423 - AluY SINE Alu -6 305 1 1152 153 74 14 chr13 79190318 79190335 -40554563 - AluJb SINE Alu 0 312 297 2452 58 3 6 chr13 79190335 79190647 -40554251 - AluY SINE Alu 0 311 1 1152 153 74 14 chr13 79190647 79190845 -40554053 - AluJb SINE Alu -15 297 84 2161 91 3 10 chr13 79191035 79191199 -40553699 - AluSg SINE Alu -15 295 132 2367 92 0 6 chr13 79191199 79191514 -40553384 - AluSq SINE Alu 0 313 1 2161 91 3 10 chr13 79191514 79191646 -40553252 - AluSg SINE Alu -178 132 1 789 148 16 0 chr13 79191658 79191786 -40553112 - FLAM_A SINE Alu -3 130 1 815 163 8 0 chr13 79192430 79192559 -40552339 - FLAM_C SINE Alu -13 130 1 213 192 273 10 chr13 79192982 79193081 -40551817 - MIR SINE MIR -83 179 55 1684 156 10 30 chr13 79193576 79193871 -40551027 + AluJo SINE Alu 1 289 -23 1486 180 33 15 chr13 79193883 79194155 -40550743 + AluJb SINE Alu 1 277 -35 189 107 0 0 chr13 79194155 79194183 -40550715 + (TA)n Simple_repeat Simple_repeat 1 28 0 2405 152 48 22 chr13 79194515 79194743 -40550155 - MSTA LTR MaLR 0 428 208 2444 44 0 3 chr13 79194743 79195041 -40549857 - AluY SINE Alu -14 297 1 2105 116 3 0 chr13 79195041 79195334 -40549564 - AluSq SINE Alu -19 294 1 2405 152 48 22 chr13 79195334 79195519 -40549379 - MSTA LTR MaLR -219 209 3 1694 160 0 28 chr13 79195616 79195933 -40548965 + AluSx SINE Alu 7 315 0 842 132 0 0 chr13 79196293 79196414 -40548484 + AluY SINE Alu 1 121 -190 603 72 52 10 chr13 79196549 79196646 -40548252 + AluSq SINE Alu 59 159 -154 245 309 0 24 chr13 79197171 79197255 -40547643 + (CA)n Simple_repeat Simple_repeat 1 82 0 2328 96 0 0 chr13 79198201 79198502 -40546396 + AluSg SINE Alu 1 301 -9 1890 147 0 26 chr13 79198743 79199050 -40545848 - AluJo SINE Alu -7 305 7 389 176 14 0 chr13 79199617 79199691 -40545207 - L2 LINE L2 -2 3270 3196 1839 107 0 4 chr13 79200003 79200256 -40544642 + AluSq SINE Alu 50 301 -12 2417 76 0 0 chr13 79200258 79200560 -40544338 + AluSq SINE Alu 2 303 -10 216 0 0 0 chr13 79200988 79201012 -40543886 + (A)n Simple_repeat Simple_repeat 1 24 0 259 306 0 12 chr13 79201693 79201778 -40543120 + GA-rich Low_complexity Low_complexity 2 85 0 300 111 0 0 chr13 79201860 79201905 -40542993 + (CA)n Simple_repeat Simple_repeat 2 46 0 183 42 0 0 chr13 79204053 79204077 -40540821 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 221 244 0 0 chr13 79205457 79205498 -40539400 + polypurine Low_complexity Low_complexity 4 44 0 675 288 152 34 chr13 79206196 79206686 -40538212 + L2 LINE L2 2764 3312 -1 207 200 0 0 chr13 79207039 79207074 -40537824 + (CTAGGG)n Simple_repeat Simple_repeat 6 40 0 388 318 0 26 chr13 79208722 79208873 -40536025 + GA-rich Low_complexity Low_complexity 1 147 0 1329 142 14 0 chr13 79209443 79209662 -40535236 - AluSx SINE Alu -90 222 1 870 175 37 93 chr13 79209662 79209797 -40535101 - L1M4 LINE L1 -562 5612 5498 823 142 31 0 chr13 79209797 79209924 -40534974 - FLAM_C SINE Alu -1 132 2 870 175 37 93 chr13 79209924 79210057 -40534841 - L1M4 LINE L1 -676 5498 5359 2199 115 0 0 chr13 79210057 79210369 -40534529 - AluSx SINE Alu 0 312 1 1085 225 27 33 chr13 79210370 79210699 -40534199 - L1M4 LINE L1 -1845 4301 3975 905 130 78 26 chr13 79210754 79210908 -40533990 + AluJb SINE Alu 14 175 -137 930 159 159 0 chr13 79210908 79211078 -40533820 + AluJo SINE Alu 66 262 -50 233 352 85 28 chr13 79211385 79211561 -40533337 - MER5A DNA MER1_type 0 189 4 1667 111 41 4 chr13 79211775 79212019 -40532879 + AluSx SINE Alu 44 296 -16 193 238 0 0 chr13 79214663 79214705 -40530193 - MIR SINE MIR -90 118 77 217 167 0 0 chr13 79216334 79216370 -40528528 + MIR SINE MIR 108 143 -119 203 231 0 0 chr13 79217999 79218038 -40526860 + (CGG)n Simple_repeat Simple_repeat 1 39 0 248 158 0 37 chr13 79226153 79226235 -40518663 + (CTG)n Simple_repeat Simple_repeat 3 81 0 2393 73 3 0 chr13 79231206 79231506 -40513392 + AluSx SINE Alu 1 301 -11 23 54 0 0 chr13 79235374 79235411 -40509487 + GC_rich Low_complexity Low_complexity 1 37 0 578 75 56 161 chr13 79239617 79239751 -40505147 - L1MB3 LINE L1 -7 6176 6060 2115 108 0 3 chr13 79239751 79240046 -40504852 - AluSg SINE Alu -16 294 1 578 75 56 161 chr13 79240046 79240072 -40504826 - L1MB3 LINE L1 -123 6060 6033 253 176 0 20 chr13 79240072 79240123 -40504775 - FRAM/FAM SINE Alu -110 65 16 741 123 0 9 chr13 79240127 79240241 -40504657 - AluSg/x SINE Alu -15 297 185 1283 128 12 31 chr13 79240256 79240514 -40504384 - L1MB4 LINE L1 -159 6021 5769 2206 90 13 6 chr13 79240567 79240878 -40504020 - AluSp SINE Alu 0 313 1 1669 174 10 10 chr13 79240890 79241055 -40503843 - AluJo SINE Alu -2 310 143 2084 130 3 3 chr13 79241055 79241363 -40503535 - AluSx SINE Alu -4 308 1 1669 174 10 10 chr13 79241363 79241507 -40503391 - AluJo SINE Alu -168 144 1 1087 169 0 16 chr13 79241717 79241884 -40503014 - AluSg/x SINE Alu -12 300 135 2052 100 39 0 chr13 79241884 79242163 -40502735 - AluSp SINE Alu -10 303 14 1087 169 0 16 chr13 79242163 79242178 -40502720 - AluSg/x SINE Alu -177 135 121 215 261 187 8 chr13 79253149 79253283 -40491615 + L2 LINE L2 2553 2710 -604 631 259 78 55 chr13 79253673 79253982 -40490916 + MLT1K LTR MaLR 207 522 -66 309 316 127 32 chr13 79253994 79254334 -40490564 + L2 LINE L2 2705 3096 -217 2217 124 0 10 chr13 79254334 79254648 -40490250 + AluSx SINE Alu 1 311 -1 309 316 127 32 chr13 79254648 79254750 -40490148 + L2 LINE L2 3096 3187 -126 2493 80 0 6 chr13 79255636 79255947 -40488951 + AluSc SINE Alu 1 309 0 1797 143 41 27 chr13 79259147 79259441 -40485457 - AluJb SINE Alu -14 298 1 224 274 0 0 chr13 79259472 79259523 -40485375 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 202 308 222 0 chr13 79259726 79259960 -40484938 + L2 LINE L2 1975 2260 -1054 185 211 18 0 chr13 79260235 79260292 -40484606 + (TATATG)n Simple_repeat Simple_repeat 4 61 0 431 139 104 9 chr13 79260310 79260425 -40484473 - L1MB5 LINE L1 -8 6172 6047 1898 129 90 0 chr13 79260442 79260721 -40484177 + AluSx SINE Alu 1 304 -8 4348 149 27 65 chr13 79260728 79260911 -40483987 - L1MB3 LINE L1 0 6183 5995 2288 94 3 13 chr13 79260911 79261209 -40483689 - AluSc SINE Alu -14 295 1 4348 149 27 65 chr13 79261209 79261805 -40483093 - L1MB3 LINE L1 -188 5995 5378 2293 118 16 0 chr13 79261805 79262109 -40482789 - AluSx SINE Alu -3 309 1 4348 149 27 65 chr13 79262109 79262188 -40482710 - L1MB3 LINE L1 -805 5378 5298 633 222 8 0 chr13 79262188 79262314 -40482584 - FLAM_A SINE Alu -6 127 1 4348 149 27 65 chr13 79262314 79262334 -40482564 - L1MB3 LINE L1 -885 5298 5279 1856 140 43 0 chr13 79262334 79262612 -40482286 - AluSx SINE Alu -22 290 1 4348 149 27 65 chr13 79262612 79263271 -40481627 - L1MB3 LINE L1 -904 5279 4674 1783 158 26 36 chr13 79263558 79263861 -40481037 - AluJb SINE Alu -12 300 1 204 311 29 29 chr13 79263972 79264075 -40480823 + L2 LINE L2 3180 3282 -31 320 343 45 0 chr13 79267872 79268006 -40476892 - MER103 DNA DNA -1 165 26 261 239 45 23 chr13 79268076 79268164 -40476734 + MIR3 SINE MIR 104 193 -15 348 220 121 0 chr13 79270409 79270500 -40474398 - MER5A DNA MER1_type -84 105 4 2256 117 0 0 chr13 79270536 79270834 -40474064 + AluSx SINE Alu 1 298 -14 2509 66 0 3 chr13 79270834 79271136 -40473762 + AluY SINE Alu 1 301 -10 1347 137 38 134 chr13 79271138 79271482 -40473416 + AluJo SINE Alu 1 311 -1 2140 143 38 0 chr13 79271484 79271856 -40473042 + L1MB2 LINE L1 5601 5986 -185 644 228 45 45 chr13 79272023 79272171 -40472727 + L1MB2 LINE L1 5970 6121 -50 1586 143 93 4 chr13 79272171 79272466 -40472432 + AluSx SINE Alu 1 318 0 644 228 45 45 chr13 79272466 79272518 -40472380 + L1MB2 LINE L1 6120 6171 0 196 402 47 8 chr13 79273035 79273162 -40471736 + L2 LINE L2 3141 3272 0 1081 135 91 101 chr13 79273270 79273325 -40471573 + L1MA8 LINE L1 5995 6049 -242 2277 124 0 13 chr13 79273325 79273639 -40471259 + AluSx SINE Alu 1 310 -2 1081 135 91 101 chr13 79273639 79273880 -40471018 + L1MA8 LINE L1 6049 6288 -3 23 0 0 0 chr13 79273880 79273903 -40470995 + AT_rich Low_complexity Low_complexity 1 23 0 1774 247 56 15 chr13 79275585 79276189 -40468709 + L1MC5 LINE L1 7301 7929 -32 2540 78 0 0 chr13 79276210 79276518 -40468380 + AluSx SINE Alu 1 308 -4 2305 80 42 0 chr13 79277572 79277861 -40467037 + AluY SINE Alu 1 301 -10 261 260 80 10 chr13 79277949 79278049 -40466849 + L1ME3 LINE L1 6023 6129 -33 465 306 62 7 chr13 79278088 79278232 -40466666 - MER91A DNA MER1_type -44 152 1 25 51 0 0 chr13 79280613 79280652 -40464246 + GC_rich Low_complexity Low_complexity 1 39 0 54 40 0 0 chr13 79280737 79280812 -40464086 + GC_rich Low_complexity Low_complexity 1 75 0 28 79 0 0 chr13 79280835 79280898 -40464000 + GC_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr13 79281115 79281137 -40463761 + GC_rich Low_complexity Low_complexity 1 22 0 291 281 20 78 chr13 79282380 79282494 -40462404 + MIR SINE MIR 87 192 -70 2234 109 0 0 chr13 79282494 79282821 -40462077 - AluSx SINE Alu 0 327 1 291 281 20 78 chr13 79282821 79282858 -40462040 + MIR SINE MIR 192 230 -32 2109 144 7 0 chr13 79284183 79284488 -40460410 + AluJb SINE Alu 1 307 -5 2337 92 0 0 chr13 79285614 79285909 -40458989 + AluSg SINE Alu 4 298 -12 562 271 32 14 chr13 79286405 79286626 -40458272 + L1M4 LINE L1 4205 4429 -1717 957 186 0 19 chr13 79286641 79286802 -40458096 + FRAM SINE Alu 1 158 -18 2455 74 14 0 chr13 79286808 79287104 -40457794 + AluSp SINE Alu 1 300 -13 2225 101 3 17 chr13 79287108 79287406 -40457492 + AluSc SINE Alu 1 294 -15 2439 260 51 15 chr13 79287407 79288204 -40456694 + L1M4 LINE L1 4439 5264 -882 2191 103 3 0 chr13 79288205 79288513 -40456385 + AluSc SINE Alu 1 309 0 1868 151 37 3 chr13 79288725 79289024 -40455874 + AluJb SINE Alu 1 309 -3 496 239 49 90 chr13 79289047 79289415 -40455483 + L1MEc LINE L1 1629 1981 -4415 1680 118 148 19 chr13 79289519 79289789 -40455109 - AluSx SINE Alu -7 305 1 2965 212 43 60 chr13 79289878 79290477 -40454421 + L1MEc LINE L1 1877 2484 -3731 2549 81 0 0 chr13 79290477 79290785 -40454113 + AluSc SINE Alu 1 308 -1 2965 212 43 60 chr13 79290785 79290805 -40454093 + L1MEc LINE L1 2484 2503 -3712 2201 115 3 6 chr13 79290805 79291117 -40453781 + AluSx SINE Alu 1 311 -1 2965 212 43 60 chr13 79291117 79291401 -40453497 + L1MEc LINE L1 2503 2790 -3425 2344 31 41 34 chr13 79291401 79291693 -40453205 + AluY SINE Alu 1 294 -17 2965 212 43 60 chr13 79291693 79292090 -40452808 + L1MEc LINE L1 2790 3124 -3091 1407 117 0 26 chr13 79292075 79292306 -40452592 + L1MEc LINE L1 3965 4189 -2026 * 2105 114 82 33 chr13 79292306 79292391 -40452507 + MER51A LTR ERV1 1 80 -554 2321 91 0 3 chr13 79292391 79292676 -40452222 + AluSx SINE Alu 1 333 0 421 20 0 0 chr13 79292676 79292725 -40452173 + (GAAAA)n Simple_repeat Simple_repeat 2 145 0 2105 114 82 33 chr13 79292725 79293178 -40451720 + MER51A LTR ERV1 80 634 0 6257 129 15 14 chr13 79293192 79293976 -40450922 + L1MA1 LINE L1 4211 4993 -1378 1552 135 143 4 chr13 79293976 79294247 -40450651 + AluJb SINE Alu 5 309 0 342 0 0 0 chr13 79294248 79294286 -40450612 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 6257 129 15 14 chr13 79294286 79294966 -40449932 + L1MA1 LINE L1 4992 5679 -692 31 26 0 0 chr13 79295370 79295408 -40449490 + AT_rich Low_complexity Low_complexity 1 38 0 5166 88 0 8 chr13 79295408 79296124 -40448774 + L1MA1 LINE L1 5662 6371 0 538 217 92 9 chr13 79296138 79296355 -40448543 + L1M4 LINE L1 3028 3262 -2884 1747 146 31 0 chr13 79296485 79296772 -40448126 + L1MB5 LINE L1 5861 6156 -18 250 267 75 108 chr13 79297693 79297721 -40447177 - MIR SINE MIR -73 135 108 2295 110 3 0 chr13 79297721 79298020 -40446878 + AluSx SINE Alu 1 300 -12 250 267 75 108 chr13 79298020 79298111 -40446787 - MIR SINE MIR -100 108 20 1515 181 0 104 chr13 79299643 79299979 -40444919 - AluJb SINE Alu -1 301 1 1473 229 30 57 chr13 79300707 79301113 -40443785 + L1M4b LINE L1 11 405 -6454 850 170 10 57 chr13 79301565 79301759 -40443139 - L1M4 LINE L1 -1938 4208 4024 1028 160 129 0 chr13 79301759 79301953 -40442945 + AluJo SINE Alu 1 219 -93 2153 207 49 49 chr13 79302072 79302523 -40442375 + L1M4b LINE L1 1203 1653 -5202 2362 96 0 3 chr13 79302523 79302824 -40442074 + AluY SINE Alu 1 300 -11 2153 207 49 49 chr13 79302824 79302837 -40442061 + L1M4b LINE L1 1653 1665 -5190 1775 167 0 42 chr13 79302837 79303148 -40441750 + AluJb SINE Alu 3 300 -12 2153 207 49 49 chr13 79303148 79303436 -40441462 + L1M4b LINE L1 1664 1956 -4899 246 226 0 0 chr13 79303434 79303487 -40441411 + L1M4b LINE L1 2176 2228 -4731 * 1144 61 0 0 chr13 79303724 79303856 -40441042 - AluY SINE Alu -179 132 1 1640 171 45 39 chr13 79303917 79304227 -40440671 - AluJb SINE Alu 0 312 1 346 191 223 0 chr13 79304228 79304322 -40440576 - FLAM_A SINE Alu -5 128 14 2941 215 27 49 chr13 79304323 79304624 -40440274 - L1M4 LINE L1 -1683 4463 4157 2247 69 31 24 chr13 79304624 79304915 -40439983 - AluSp SINE Alu -20 293 1 2402 88 7 0 chr13 79304917 79305223 -40439675 - AluSq SINE Alu -5 308 1 2941 215 27 49 chr13 79305223 79305775 -40439123 - L1M4 LINE L1 -1990 4156 3626 774 199 0 22 chr13 79305776 79305912 -40438986 + FLAM_A SINE Alu 1 133 0 306 185 0 0 chr13 79305964 79306018 -40438880 - L1M4 LINE L1 -2507 3639 3586 720 160 80 0 chr13 79306022 79306147 -40438751 + FLAM_C SINE Alu 9 143 0 2412 99 0 0 chr13 79306226 79306530 -40438368 + AluSx SINE Alu 1 304 -8 638 217 31 0 chr13 79306531 79306660 -40438238 + MER5B DNA MER1_type 35 167 -11 267 250 0 0 chr13 79307995 79308059 -40436839 - HsTC2 DNA Tc2 -1600 298 235 829 245 230 27 chr13 79308162 79308640 -40436258 + L2 LINE L2 1228 1802 -1512 779 194 22 0 chr13 79308672 79308811 -40436087 + FRAM SINE Alu 25 166 -10 1839 255 122 33 chr13 79308812 79309568 -40435330 + L2 LINE L2 1790 2612 -702 424 123 0 0 chr13 79309592 79309649 -40435249 - AluSx SINE Alu -36 273 217 1213 118 24 6 chr13 79309650 79309820 -40435078 - AluSx SINE Alu -139 173 1 637 283 121 37 chr13 79309820 79310071 -40434827 + L2 LINE L2 2686 2915 -398 2031 98 0 8 chr13 79310071 79310336 -40434562 - AluSg SINE Alu -1 309 47 637 283 121 37 chr13 79310336 79310647 -40434251 + L2 LINE L2 2915 3306 -7 566 181 43 0 chr13 79311055 79311171 -40433727 + AluY SINE Alu 160 280 -31 656 240 58 13 chr13 79311182 79311427 -40433471 + L1M4 LINE L1 3317 3570 -2576 1019 138 6 58 chr13 79311427 79311601 -40433297 - FRAM SINE Alu -1 165 1 815 198 40 0 chr13 79311620 79311797 -40433101 + L1M4 LINE L1 3671 3854 -2292 2381 98 3 0 chr13 79311798 79312095 -40432803 + AluSq SINE Alu 3 300 -13 429 312 81 50 chr13 79312429 79312727 -40432171 + L2 LINE L2 2924 3230 -42 2521 61 0 0 chr13 79312920 79313217 -40431681 + AluY SINE Alu 1 297 -14 320 238 71 0 chr13 79313692 79313776 -40431122 + L2 LINE L2 3182 3271 -1 295 275 37 28 chr13 79314427 79314536 -40430362 + MIR SINE MIR 25 134 -74 203 297 0 47 chr13 79316256 79316320 -40428578 + L2 LINE L2 3189 3249 -23 663 248 204 4 chr13 79316531 79316781 -40428117 + L2 LINE L2 2273 2572 -742 1041 269 138 13 chr13 79316880 79317408 -40427490 + L1MC4a LINE L1 5577 6170 -1638 2273 115 0 0 chr13 79317897 79318193 -40426705 + AluSx SINE Alu 1 296 -16 343 232 90 26 chr13 79318786 79318941 -40425957 - LTR46-int LTR ERV1 -1273 5712 5548 3429 284 50 34 chr13 79319108 79320743 -40424155 - LTR46-int LTR ERV1 -4830 2889 1228 2463 97 0 0 chr13 79320747 79321056 -40423842 - AluSq SINE Alu -4 309 1 2055 73 10 53 chr13 79322019 79322319 -40422579 - AluY SINE Alu -24 287 1 211 325 52 0 chr13 79328927 79329004 -40415894 - MIR SINE MIR -94 114 34 766 132 0 59 chr13 79330186 79330322 -40414576 + FLAM_C SINE Alu 1 128 -15 2320 113 0 0 chr13 79330371 79330671 -40414227 + AluSx SINE Alu 1 300 -12 25 31 0 0 chr13 79330885 79330917 -40413981 + AT_rich Low_complexity Low_complexity 1 32 0 2328 123 0 0 chr13 79330937 79331246 -40413652 + AluSx SINE Alu 1 309 -3 1748 66 4 29 chr13 79331809 79331968 -40412930 - AluY SINE Alu -20 291 138 2355 58 13 10 chr13 79331968 79332277 -40412621 - AluY SINE Alu 0 311 2 1748 66 4 29 chr13 79332277 79332358 -40412540 - AluY SINE Alu -173 138 57 1193 42 0 0 chr13 79334303 79334445 -40410453 + L1PA8 LINE L1 6029 6170 -2 324 0 0 0 chr13 79334450 79334486 -40410412 + (TA)n Simple_repeat Simple_repeat 1 36 0 384 290 94 14 chr13 79335812 79335950 -40408948 + L2 LINE L2 2900 3048 -224 35 0 0 0 chr13 79336062 79336097 -40408801 + AT_rich Low_complexity Low_complexity 1 35 0 246 202 24 83 chr13 79336193 79336277 -40408621 + L2 LINE L2 3194 3272 0 278 366 32 0 chr13 79336428 79336521 -40408377 - L2 LINE L2 -21 3292 3197 422 235 26 43 chr13 79336687 79336802 -40408096 + L1MC4 LINE L1 6591 6703 -1339 355 322 0 0 chr13 79336722 79336812 -40408086 - L1MC4 LINE L1 -1339 6703 6614 * 365 224 51 31 chr13 79336818 79336916 -40407982 + L1MC4 LINE L1 6604 6703 -1339 180 0 0 0 chr13 79336929 79336949 -40407949 + (TA)n Simple_repeat Simple_repeat 1 20 0 300 152 106 0 chr13 79337219 79337285 -40407613 - L1MC4 LINE L1 -1889 5919 5847 2297 128 0 3 chr13 79337679 79337992 -40406906 - AluSx SINE Alu 0 312 1 394 167 0 0 chr13 79338347 79338407 -40406491 - L2 LINE L2 0 3313 3254 2311 118 0 0 chr13 79338800 79339106 -40405792 - AluSx SINE Alu -1 311 6 188 279 207 0 chr13 79339109 79339220 -40405678 + MIR SINE MIR 100 233 -29 507 210 67 34 chr13 79339443 79339562 -40405336 - FLAM_A SINE Alu -10 123 1 1691 136 33 102 chr13 79339578 79339682 -40405216 - L1MB8 LINE L1 -6 6172 6062 2372 85 3 0 chr13 79339682 79339977 -40404921 - AluY SINE Alu -15 296 1 1691 136 33 102 chr13 79339977 79340246 -40404652 - L1MB8 LINE L1 -116 6062 5833 1723 185 0 38 chr13 79340246 79340560 -40404338 - AluJo SINE Alu -10 302 1 1691 136 33 102 chr13 79340560 79340634 -40404264 - L1MB8 LINE L1 -345 5833 5755 1045 207 15 137 chr13 79340625 79340678 -40404220 - L1M4 LINE L1 -2099 4047 3989 * 2221 83 0 64 chr13 79340678 79340992 -40403906 - AluSg SINE Alu -16 294 1 1045 207 15 137 chr13 79340992 79341370 -40403528 - L1M4 LINE L1 -2157 3989 3691 684 212 0 0 chr13 79341370 79341513 -40403385 - FLAM_A SINE Alu 0 146 4 1045 207 15 137 chr13 79341513 79341619 -40403279 - L1M4 LINE L1 -2455 3691 3574 1186 243 156 34 chr13 79341753 79342227 -40402671 + MLT1G LTR MaLR 59 590 0 265 286 13 0 chr13 79342464 79342541 -40402357 + MLT1H LTR MaLR 454 531 -18 301 151 0 81 chr13 79342957 79343043 -40401855 + L1MC5 LINE L1 7161 7239 -722 1983 171 0 7 chr13 79343103 79343412 -40401486 - AluJb SINE Alu -5 307 1 610 240 76 56 chr13 79343480 79343789 -40401109 + L1MC5 LINE L1 7260 7561 -400 2144 134 0 10 chr13 79343789 79344102 -40400796 + AluSx SINE Alu 1 310 -2 610 240 76 56 chr13 79344102 79344294 -40400604 + L1MC5 LINE L1 7561 7748 -213 2511 62 0 10 chr13 79344294 79344600 -40400298 + AluY SINE Alu 1 303 -8 1453 58 0 6 chr13 79344600 79344774 -40400124 + AluY SINE Alu 133 305 -6 610 240 76 56 chr13 79344774 79344899 -40399999 + L1MC5 LINE L1 7747 7895 -66 189 385 52 0 chr13 79345445 79345580 -40399318 + L3 LINE CR1 733 874 -703 417 20 0 0 chr13 79346277 79346327 -40398571 + (CA)n Simple_repeat Simple_repeat 2 51 0 381 255 30 43 chr13 79346441 79346596 -40398302 + HERV9 LTR ERV1 7831 7933 -466 2510 81 10 0 chr13 79346596 79346906 -40397992 - AluSp SINE Alu 0 313 1 381 255 30 43 chr13 79346906 79346949 -40397949 + HERV9 LTR ERV1 7933 7975 -424 2500 75 0 0 chr13 79347079 79347385 -40397513 - AluY SINE Alu -5 306 1 294 284 11 11 chr13 79348746 79348841 -40396057 + L2 LINE L2 3200 3294 -19 1872 159 10 0 chr13 79348846 79349136 -40395762 - AluJb SINE Alu -18 294 2 436 135 19 58 chr13 79349638 79349742 -40395156 + FRAM SINE Alu 77 176 0 503 276 0 0 chr13 79349753 79349898 -40395000 + L1ME LINE L1 4773 4917 -1229 * 2483 144 33 33 chr13 79349896 79350383 -40394515 + L1MD1 LINE L1 5736 6222 -20 1927 152 17 3 chr13 79350466 79350768 -40394130 - AluJb SINE Alu -6 306 1 242 235 51 86 chr13 79350852 79351086 -40393812 + L1ME LINE L1 5264 5489 -2319 257 325 140 13 chr13 79351147 79351375 -40393523 + L1ME LINE L1 5604 5860 -306 2550 60 3 0 chr13 79351381 79351683 -40393215 + AluY SINE Alu 1 303 -8 1410 156 55 4 chr13 79352169 79352407 -40392491 - AluJo SINE Alu -48 264 15 1257 105 0 0 chr13 79352489 79352651 -40392247 - AluSg/x SINE Alu -14 296 135 524 283 101 13 chr13 79352735 79352894 -40392004 - MIR SINE MIR -44 218 46 181 91 30 0 chr13 79353278 79353311 -40391587 + (TA)n Simple_repeat Simple_repeat 1 34 0 546 198 191 0 chr13 79353649 79353806 -40391092 - MER3 DNA MER1_type -22 187 1 2933 137 51 5 chr13 79354454 79355037 -40389861 + L1MB3 LINE L1 5440 6117 -66 1838 170 6 25 chr13 79355081 79355399 -40389499 + AluJb SINE Alu 1 312 0 345 21 0 0 chr13 79355632 79355679 -40389219 - AluY SINE Alu 0 302 256 1736 166 3 27 chr13 79356306 79356601 -40388297 + AluJo SINE Alu 1 288 -24 2208 106 3 3 chr13 79357156 79357449 -40387449 - AluSq SINE Alu -20 293 1 23 0 0 0 chr13 79357457 79357480 -40387418 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 79357752 79357776 -40387122 + AT_rich Low_complexity Low_complexity 1 24 0 1656 197 17 3 chr13 79357776 79358066 -40386832 - AluJb SINE Alu -18 294 1 877 171 76 0 chr13 79358312 79358470 -40386428 + FAM SINE Alu 1 170 -5 822 148 0 0 chr13 79359019 79359147 -40385751 - AluSg/x SINE Alu 0 310 183 1722 89 5 0 chr13 79359147 79359361 -40385537 - AluSg SINE Alu -90 220 6 341 349 18 0 chr13 79360435 79360544 -40384354 - L2 LINE L2 -18 3254 3144 1982 124 0 14 chr13 79360589 79360879 -40384019 + AluSx SINE Alu 3 288 -24 2443 84 0 3 chr13 79361385 79361693 -40383205 - AluSg SINE Alu -3 307 1 2412 85 0 7 chr13 79362399 79362706 -40382192 + AluSc SINE Alu 1 305 -4 2225 123 3 3 chr13 79363391 79363700 -40381198 - AluSx SINE Alu -3 309 1 1905 125 14 24 chr13 79363702 79363991 -40380907 - AluSx SINE Alu 0 312 27 1364 73 0 0 chr13 79363994 79364158 -40380740 - AluSg/x SINE Alu -13 297 134 2375 59 7 10 chr13 79364160 79364483 -40380415 - AluY SINE Alu 0 311 1 2277 92 0 0 chr13 79364668 79365017 -40379881 - AluSx SINE Alu 0 349 1 43 0 0 0 chr13 79366231 79366274 -40378624 + AT_rich Low_complexity Low_complexity 1 43 0 1318 159 52 107 chr13 79366274 79366423 -40378475 + AluJb SINE Alu 2 127 -175 180 0 0 0 chr13 79366423 79366443 -40378455 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1318 159 52 107 chr13 79366443 79366602 -40378296 + AluJb SINE Alu 127 293 -9 585 174 116 0 chr13 79366706 79366827 -40378071 + MER58B DNA MER1_type 177 311 -30 1728 182 0 0 chr13 79366832 79367090 -40377808 + AluJb SINE Alu 6 263 -49 21 36 0 0 chr13 79367428 79367456 -40377442 + AT_rich Low_complexity Low_complexity 1 28 0 510 139 47 256 chr13 79368351 79368614 -40376284 + MER33 DNA MER1_type 13 228 -2396 2108 145 0 0 chr13 79368614 79368910 -40375988 + AluSx SINE Alu 4 299 -13 510 139 47 256 chr13 79368910 79369023 -40375875 + MER33 DNA MER1_type 228 363 0 248 234 16 0 chr13 79369068 79369132 -40375766 + L1MC4 LINE L1 7498 7562 -480 1103 219 123 8 chr13 79369228 79369479 -40375419 - AluJo SINE Alu -30 282 3 2105 117 3 3 chr13 79369723 79370013 -40374885 - AluSp SINE Alu -23 290 1 238 267 27 48 chr13 79370019 79370165 -40374733 - HAL1b LINE L1 -1085 263 121 2409 85 0 0 chr13 79370429 79370724 -40374174 + AluY SINE Alu 1 295 -16 2018 125 0 46 chr13 79372229 79372555 -40372343 - AluSx SINE Alu 0 312 1 398 313 96 18 chr13 79372555 79372712 -40372186 + HAL1b LINE L1 521 694 -654 2661 59 0 0 chr13 79372799 79373106 -40371792 - AluY SINE Alu -4 307 1 4636 181 46 10 chr13 79374450 79375459 -40369439 - L1MD2 LINE L1 -61 6298 5254 2241 80 36 7 chr13 79375472 79375774 -40369124 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 79375781 79375802 -40369096 + AT_rich Low_complexity Low_complexity 1 21 0 2285 98 16 23 chr13 79375901 79376208 -40368690 + AluSx SINE Alu 1 305 -7 1115 132 0 0 chr13 79376208 79376360 -40368538 + AluSq SINE Alu 104 255 -58 306 221 26 106 chr13 79376710 79376823 -40368075 + L1MCa LINE L1 1962 2065 -4361 * 311 228 54 33 chr13 79376744 79376836 -40368062 - L1MC4 LINE L1 -1341 6701 6608 203 73 73 0 chr13 79376836 79376891 -40368007 + (TA)n Simple_repeat Simple_repeat 2 60 0 325 295 127 62 chr13 79376902 79377146 -40367752 + L2 LINE L2 3015 3274 -39 579 177 6 51 chr13 79377397 79377555 -40367343 + AluSq SINE Alu 4 154 -159 2349 88 0 0 chr13 79377777 79378062 -40366836 - AluSc SINE Alu -24 285 1 1156 104 174 0 chr13 79378063 79378275 -40366623 - MER44D DNA MER2_type -90 519 1 248 111 89 0 chr13 79378276 79378321 -40366577 + L1MB4 LINE L1 5721 5769 -409 2177 128 0 13 chr13 79378321 79378627 -40366271 + AluSx SINE Alu 1 302 -10 828 126 65 55 chr13 79378627 79378826 -40366072 + L1MB4 LINE L1 5974 6174 -6 1820 108 37 0 chr13 79479646 79479914 -40264984 - AluSg SINE Alu -20 290 13 3473 121 14 0 chr13 79480016 79480527 -40264371 + LTR43 LTR ERV1 85 602 0 1257 286 38 22 chr13 79480541 79481221 -40263677 + L1M4c LINE L1 2008 2629 -4930 758 138 0 0 chr13 79483300 79483409 -40261489 - AluSp SINE Alu -203 110 2 1345 199 3 44 chr13 79483415 79483732 -40261166 - AluJb SINE Alu -8 304 1 308 161 0 0 chr13 79483748 79483810 -40261088 - Charlie1 DNA MER1_type -80 2681 2620 1781 151 0 31 chr13 79483810 79484129 -40260769 - AluJo SINE Alu -3 309 1 444 145 0 0 chr13 79484129 79484198 -40260700 + LTR54 LTR ERV1 409 477 -33 613 206 0 0 chr13 79484198 79484300 -40260598 + FRAM SINE Alu 1 96 -80 831 31 0 0 chr13 79484409 79484505 -40260393 - AluSc SINE Alu -200 109 14 1536 88 18 9 chr13 79484505 79484732 -40260166 + AluSg/x SINE Alu 82 310 0 253 243 0 71 chr13 79484742 79484812 -40260086 - MIR SINE MIR -128 134 70 897 129 0 0 chr13 79484887 79485019 -40259879 + FLAM_C SINE Alu 2 133 -10 1929 116 20 7 chr13 79485023 79485316 -40259582 + AluSx SINE Alu 1 297 -15 29 28 0 0 chr13 79485318 79485354 -40259544 + AT_rich Low_complexity Low_complexity 1 36 0 2144 121 0 0 chr13 79485530 79485828 -40259070 + AluSq SINE Alu 2 299 -14 257 51 26 0 chr13 79485830 79485869 -40259029 + LTR54 LTR ERV1 471 510 0 337 187 13 27 chr13 79485869 79485944 -40258954 + L1M4c LINE L1 3604 3677 -3890 358 169 0 14 chr13 79485944 79486163 -40258735 + AluJb SINE Alu 35 256 -46 192 40 0 0 chr13 79486163 79486188 -40258710 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 837 112 0 22 chr13 79486188 79486322 -40258576 + FLAM_C SINE Alu 2 132 -1 358 169 0 14 chr13 79486322 79486339 -40258559 + AluJb SINE Alu 254 301 -1 2126 97 0 31 chr13 79486364 79486684 -40258214 + AluSx SINE Alu 1 310 -2 1393 109 82 92 chr13 79486688 79486818 -40258080 + LTR23 LTR ERV1 7 137 -300 1271 189 45 25 chr13 79486818 79487104 -40257794 + AluJo SINE Alu 1 292 -20 1393 109 82 92 chr13 79487104 79487175 -40257723 + LTR23 LTR ERV1 137 207 -230 783 115 46 31 chr13 79487175 79487305 -40257593 + FLAM_C SINE Alu 1 132 -1 1393 109 82 92 chr13 79487305 79487405 -40257493 + LTR23 LTR ERV1 207 306 -131 2127 109 3 0 chr13 79487411 79487705 -40257193 + AluSp SINE Alu 7 301 -12 2139 111 0 0 chr13 79487710 79488017 -40256881 + AluSg1 SINE Alu 1 307 -2 1927 125 0 4 chr13 79488022 79488302 -40256596 + AluSc SINE Alu 1 279 -30 2125 108 0 0 chr13 79488302 79488589 -40256309 + AluSx SINE Alu 1 287 -25 207 0 0 0 chr13 79488630 79488653 -40256245 + (TA)n Simple_repeat Simple_repeat 2 24 0 2196 93 36 0 chr13 79488813 79489115 -40255783 - AluSq SINE Alu 0 313 1 2004 104 0 14 chr13 79489134 79489448 -40255450 - AluSg SINE Alu 0 310 1 2045 125 3 10 chr13 79489448 79489758 -40255140 - AluSg SINE Alu -1 309 1 643 117 0 0 chr13 79489809 79489903 -40254995 + LTR23 LTR ERV1 344 437 0 487 167 56 0 chr13 79489907 79490015 -40254883 + L1M4c LINE L1 3696 3809 -3756 772 214 84 17 chr13 79490070 79490212 -40254686 - AluJb SINE Alu -23 289 131 2069 92 3 38 chr13 79490212 79490526 -40254372 - AluSp SINE Alu -10 303 1 772 214 84 17 chr13 79490526 79490561 -40254337 - AluJb SINE Alu -181 131 100 464 150 50 0 chr13 79490559 79490639 -40254259 + AluSg/x SINE Alu 211 294 -15 * 2108 116 3 0 chr13 79490640 79490941 -40253957 + AluSp SINE Alu 1 302 -11 1001 133 6 0 chr13 79490941 79491099 -40253799 + AluSg/x SINE Alu 137 295 -17 1894 110 50 0 chr13 79491101 79491382 -40253516 + AluSc SINE Alu 1 295 -14 2206 76 3 3 chr13 79491391 79491679 -40253219 + AluSp SINE Alu 2 289 -24 30 0 0 0 chr13 79491679 79491709 -40253189 + AT_rich Low_complexity Low_complexity 1 30 0 2138 96 0 3 chr13 79491709 79492002 -40252896 + AluSg1 SINE Alu 1 292 -17 1930 125 0 0 chr13 79492013 79492292 -40252606 + AluSq SINE Alu 1 279 -34 243 0 0 0 chr13 79492305 79492332 -40252566 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1972 133 7 0 chr13 79492332 79492617 -40252281 + AluSx SINE Alu 2 288 -24 687 259 16 133 chr13 79492618 79493010 -40251888 - L2 LINE L2 -297 3016 2664 1586 208 31 19 chr13 79493050 79493398 -40251500 - L1P LINE L1 -3018 3128 2773 2091 102 27 0 chr13 79493398 79493572 -40251326 - AluSp SINE Alu -11 302 115 198 0 0 0 chr13 79493572 79493594 -40251304 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2091 102 27 0 chr13 79493594 79493713 -40251185 - AluSp SINE Alu -198 115 1 1586 208 31 19 chr13 79493713 79493782 -40251116 - L1P LINE L1 -3373 2773 2706 2391 87 16 0 chr13 79493786 79494107 -40250791 + L1PA8A LINE L1 5806 6131 0 * 5455 130 14 23 chr13 79494102 79494977 -40249921 + L1PA15 LINE L1 4922 5774 -391 2021 123 0 0 chr13 79494977 79495269 -40249629 + AluSx SINE Alu 1 292 -20 5455 130 14 23 chr13 79495269 79495656 -40249242 + L1PA15 LINE L1 5774 6163 -2 313 296 105 75 chr13 79495660 79495927 -40248971 - LTR33A LTR ERVL -36 487 213 286 261 101 0 chr13 79495953 79496022 -40248876 - LTR33A LTR ERVL -393 130 55 1285 310 55 39 chr13 79496071 79496196 -40248702 - L2 LINE L2 -654 2660 2538 2030 149 0 0 chr13 79496196 79496505 -40248393 - AluSx SINE Alu -3 309 1 1285 310 55 39 chr13 79496505 79496940 -40247958 - L2 LINE L2 -776 2538 2091 474 306 78 22 chr13 79496910 79497142 -40247756 - L2 LINE L2 -1340 1974 1730 * 703 285 6 6 chr13 79497936 79498115 -40246783 - MIR3 SINE MIR -6 202 24 908 171 89 106 chr13 79499056 79499349 -40245549 + L1ME1 LINE L1 4716 5003 -1143 749 152 194 12 chr13 79499353 79499518 -40245380 + MSTA LTR MaLR 1 195 -233 2459 66 7 0 chr13 79499518 79499819 -40245079 + AluY SINE Alu 1 303 -8 1516 249 24 15 chr13 79499827 79500237 -40244661 + L1ME1 LINE L1 5686 6099 -67 1957 133 13 10 chr13 79500385 79500685 -40244213 - AluSx SINE Alu -11 301 1 222 227 152 0 chr13 79500685 79500751 -40244147 - L2 LINE L2 -599 2715 2640 308 266 161 36 chr13 79500813 79501005 -40243893 + L1ME LINE L1 4611 4826 -1320 447 252 93 65 chr13 79501011 79501247 -40243651 + L1ME LINE L1 4886 5114 -1056 2387 96 3 0 chr13 79501247 79501549 -40243349 + AluSx SINE Alu 1 303 -9 447 252 93 65 chr13 79501549 79501886 -40243012 + L1ME LINE L1 5114 5480 -690 29 28 0 0 chr13 79501913 79501949 -40242949 + AT_rich Low_complexity Low_complexity 1 36 0 2154 126 0 0 chr13 79502041 79502334 -40242564 + AluSg SINE Alu 1 293 -17 2235 142 45 11 chr13 79502466 79502825 -40242073 + L1PA16 LINE L1 5792 6162 -4 486 161 37 0 chr13 79502866 79502947 -40241951 + MER34 LTR ERV1 380 463 -79 595 283 129 46 chr13 79502948 79503889 -40241009 + L1MC/D LINE L1 4644 5654 -743 283 141 0 42 chr13 79504039 79504110 -40240788 + (GGAAA)n Simple_repeat Simple_repeat 3 70 0 212 365 130 0 chr13 79505669 79505784 -40239114 - MIR3 SINE MIR 0 208 79 256 182 36 0 chr13 79506822 79506877 -40238021 + LTR31 LTR ERV1 23 79 -540 1247 174 14 5 chr13 79508465 79508677 -40236221 - LOR1a LTR ERV1 -17 480 267 880 180 133 19 chr13 79508646 79508857 -40236041 - LOR1b LTR ERV1 -225 236 2 * 247 128 0 0 chr13 79510005 79510044 -40234854 + MIR3 SINE MIR 159 197 -11 518 260 89 12 chr13 79510584 79510753 -40234145 - MIR SINE MIR -34 228 47 195 42 0 0 chr13 79510834 79510858 -40234040 + (GGATG)n Simple_repeat Simple_repeat 4 27 0 383 284 53 82 chr13 79510866 79511074 -40233824 - MER63A DNA MER1_type 0 210 9 2001 141 0 7 chr13 79511095 79511385 -40233513 - AluSx SINE Alu -24 288 1 1705 188 7 7 chr13 79512546 79512839 -40232059 + AluJo SINE Alu 1 293 -19 38 22 0 0 chr13 79512839 79512884 -40232014 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 79513556 79513577 -40231321 + AT_rich Low_complexity Low_complexity 1 21 0 356 263 50 0 chr13 79514194 79514293 -40230605 - MLT1D LTR MaLR 0 505 402 1348 213 66 21 chr13 79514330 79514663 -40230235 - MLT1D LTR MaLR -157 348 1 979 226 68 15 chr13 79514842 79515107 -40229791 + L1MCa LINE L1 882 1160 -5266 1144 186 47 39 chr13 79515121 79515400 -40229498 + MER93b LTR ERV1 91 371 -2 1075 217 88 37 chr13 79515402 79515776 -40229122 + L1MCa LINE L1 1306 1698 -4728 361 189 47 8 chr13 79516038 79516165 -40228733 + (TA)n Simple_repeat Simple_repeat 2 133 0 282 163 0 0 chr13 79516297 79516340 -40228558 + Alu SINE Alu 248 290 -10 1226 133 0 0 chr13 79516340 79516526 -40228372 + AluSg/x SINE Alu 119 304 0 1304 180 57 57 chr13 79516530 79516734 -40228164 - LTR54 LTR ERV1 -105 393 156 2272 119 3 0 chr13 79516734 79517046 -40227852 - AluSp SINE Alu 0 313 1 1304 180 57 57 chr13 79517046 79517202 -40227696 - LTR54 LTR ERV1 -342 156 1 1792 163 0 31 chr13 79517243 79517562 -40227336 + AluJb SINE Alu 1 309 -3 327 161 0 0 chr13 79517562 79517624 -40227274 + Charlie1 DNA MER1_type 2620 2681 -80 1626 177 3 44 chr13 79517640 79517957 -40226941 + AluJb SINE Alu 1 304 -8 2155 97 0 20 chr13 79517962 79518261 -40226637 + AluY SINE Alu 1 293 -18 845 179 0 14 chr13 79518261 79518401 -40226497 + AluSg/x SINE Alu 132 269 -41 2360 112 0 3 chr13 79518401 79518714 -40226184 + AluSx SINE Alu 1 312 0 869 177 70 70 chr13 79518714 79518887 -40226011 - MER33 DNA MER1_type -2341 244 72 2162 92 20 3 chr13 79518887 79519192 -40225706 - AluSx SINE Alu -2 310 1 2452 51 0 14 chr13 79519193 79519488 -40225410 - AluSg SINE Alu -18 292 2 869 177 70 70 chr13 79519488 79519555 -40225343 - MER33 DNA MER1_type -2512 73 2 326 336 71 0 chr13 79519558 79519671 -40225227 + L2 LINE L2 3191 3311 -2 510 149 0 0 chr13 79520051 79520138 -40224760 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 902 150 0 0 chr13 79520235 79520368 -40224530 + FLAM_C SINE Alu 1 133 -10 2014 112 20 10 chr13 79520372 79520666 -40224232 + AluSx SINE Alu 1 297 -15 29 28 0 0 chr13 79520668 79520704 -40224194 + AT_rich Low_complexity Low_complexity 1 36 0 413 81 0 0 chr13 79520756 79520818 -40224080 - Alu SINE Alu -7 305 244 1805 122 0 30 chr13 79520818 79521114 -40223784 + AluSx SINE Alu 24 311 0 2299 98 13 0 chr13 79521114 79521421 -40223477 + AluSp SINE Alu 1 311 -2 762 191 15 0 chr13 79521422 79521558 -40223340 + AluJo/FRAM SINE Alu 168 305 -7 2041 133 0 33 chr13 79521558 79521693 -40223205 + AluSx SINE Alu 2 140 -162 2337 100 0 10 chr13 79521693 79521828 -40223070 + AluSx SINE Alu 1 136 -176 2467 62 0 7 chr13 79521828 79522134 -40222764 + AluY SINE Alu 1 304 -7 2337 100 0 10 chr13 79522134 79522308 -40222590 + AluSx SINE Alu 136 307 -5 2041 133 0 33 chr13 79522308 79522473 -40222425 + AluSx SINE Alu 140 292 -10 414 85 0 0 chr13 79522484 79522543 -40222355 + (CA)n Simple_repeat Simple_repeat 2 60 0 210 143 0 0 chr13 79522796 79522831 -40222067 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 1992 111 34 24 chr13 79522843 79523141 -40221757 + AluSq SINE Alu 1 301 -12 2102 110 10 10 chr13 79523143 79523594 -40221304 + AluSg SINE Alu 9 459 0 855 185 0 0 chr13 79523609 79523755 -40221143 + AluJo SINE Alu 1 146 -166 1058 184 0 6 chr13 79523801 79523980 -40220918 + AluJb SINE Alu 118 295 -17 1271 184 3 78 chr13 79523995 79524289 -40220609 - AluJo SINE Alu -40 272 1 2322 97 0 13 chr13 79525696 79526004 -40218894 - AluSx SINE Alu -8 304 1 510 301 45 11 chr13 79526394 79526570 -40218328 + MIR SINE MIR 55 236 -26 2066 99 9 84 chr13 79526987 79527184 -40217714 - AluSq SINE Alu -4 309 146 2219 96 3 7 chr13 79527184 79527477 -40217421 - AluSp SINE Alu -21 292 1 2066 99 9 84 chr13 79527477 79527612 -40217286 - AluSq SINE Alu -167 146 2 2256 113 0 0 chr13 79527628 79527930 -40216968 - AluSx SINE Alu -2 310 9 832 189 73 11 chr13 79528046 79528256 -40216642 + MER93b LTR ERV1 175 371 -2 859 240 231 37 chr13 79528258 79528770 -40216128 + L1MCa LINE L1 1306 1916 -4510 311 150 133 0 chr13 79528773 79528833 -40216065 + MLT2C1 LTR ERVL 3 70 -327 273 113 0 57 chr13 79528839 79528892 -40216006 + L1PB1 LINE L1 5743 5792 -359 408 87 70 9 chr13 79528894 79529009 -40215889 + (TA)n Simple_repeat Simple_repeat 2 123 0 2246 154 8 11 chr13 79529009 79529380 -40215518 + L1PB1 LINE L1 5781 6150 -1 914 237 45 74 chr13 79529386 79529723 -40215175 + MLT2C1 LTR ERVL 71 397 0 992 158 107 26 chr13 79529798 79530032 -40214866 + L1MCa LINE L1 2058 2310 -4116 2403 168 74 40 chr13 79530154 79530679 -40214219 + L1MC3 LINE L1 7088 7630 -155 300 172 0 0 chr13 79530821 79530879 -40214019 + GA-rich Low_complexity Low_complexity 2 59 0 41 58 0 0 chr13 79530976 79531045 -40213853 + AT_rich Low_complexity Low_complexity 1 69 0 466 150 20 30 chr13 79531211 79531311 -40213587 - MLT1F LTR MaLR 0 542 444 201 74 0 0 chr13 79631463 79631490 -40113408 + (CATA)n Simple_repeat Simple_repeat 2 28 0 185 270 0 14 chr13 79632024 79632098 -40112800 + CT-rich Low_complexity Low_complexity 1 73 0 466 177 98 85 chr13 79632537 79632701 -40112197 + L1MD2 LINE L1 6194 6359 0 1754 215 156 65 chr13 79632983 79633349 -40111549 - LTR1B LTR ERV1 0 826 495 2616 56 0 0 chr13 79633349 79633654 -40111244 - AluY SINE Alu -6 305 1 1754 215 156 65 chr13 79633654 79634044 -40110854 - LTR1B LTR ERV1 -331 495 1 757 193 0 0 chr13 79635998 79636138 -40108760 + FLAM_C SINE Alu 3 142 -1 663 314 169 42 chr13 79636395 79636987 -40107911 - L2 LINE L2 -532 2782 2116 375 309 107 45 chr13 79636987 79637165 -40107733 - MER5A DNA MER1_type 0 189 1 225 299 227 36 chr13 79637256 79637560 -40107338 - L2 LINE L2 -1499 1815 1454 196 333 61 69 chr13 79637912 79638158 -40106740 - L2 LINE L2 -2384 930 687 351 0 0 0 chr13 79638260 79638299 -40106599 + (TA)n Simple_repeat Simple_repeat 1 39 0 2462 61 0 10 chr13 79638299 79638609 -40106289 - AluY SINE Alu -4 307 1 190 255 20 0 chr13 79638964 79639015 -40105883 + L2 LINE L2 1358 1409 -1905 644 87 0 47 chr13 79639164 79639291 -40105607 + (TTTCC)n Simple_repeat Simple_repeat 4 124 0 2059 122 4 0 chr13 79639292 79639571 -40105327 - AluSp SINE Alu -33 280 1 882 222 59 19 chr13 79640094 79640330 -40104568 + MIR SINE MIR 10 250 -12 1718 190 0 3 chr13 79641148 79641459 -40103439 - AluJb SINE Alu 0 312 3 208 338 130 0 chr13 79641602 79641679 -40103219 - L2 LINE L2 -41 3231 3145 248 316 86 8 chr13 79641790 79641907 -40102991 - L2 LINE L2 -480 2834 2709 543 326 158 28 chr13 79642049 79642448 -40102450 - L2 LINE L2 -647 2667 2217 2243 114 3 3 chr13 79642640 79642947 -40101951 - AluSx SINE Alu -5 307 1 22 0 0 0 chr13 79643031 79643053 -40101845 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chr13 79643628 79643678 -40101220 + AT_rich Low_complexity Low_complexity 1 50 0 358 198 128 86 chr13 79643685 79643872 -40101026 - L1ME4a LINE L1 -23 6098 5904 268 274 0 0 chr13 79645015 79645077 -40099821 - L2 LINE L2 -8 3305 3244 770 154 104 0 chr13 79646353 79646535 -40098363 + L1MA7 LINE L1 6081 6281 -10 435 245 204 20 chr13 79647290 79647437 -40097461 - MER5A DNA MER1_type -2 187 14 1257 188 62 35 chr13 79648119 79648407 -40096491 + AluJo SINE Alu 1 296 -16 24 32 0 0 chr13 79648845 79648876 -40096022 + AT_rich Low_complexity Low_complexity 1 31 0 2327 98 0 0 chr13 79649077 79649372 -40095526 - AluSx SINE Alu -17 295 1 665 237 8 0 chr13 79649399 79649530 -40095368 - FLAM_A SINE Alu 0 133 2 307 319 160 25 chr13 79649551 79649818 -40095080 - L2 LINE L2 -226 3046 2746 223 372 66 25 chr13 79649896 79650017 -40094881 + L2 LINE L2 3141 3266 -6 305 286 29 0 chr13 79650048 79650153 -40094745 + (TGGA)n Simple_repeat Simple_repeat 1 108 0 * 349 314 6 24 chr13 79650084 79650253 -40094645 + GA-rich Low_complexity Low_complexity 3 168 0 300 292 21 0 chr13 79650552 79650648 -40094250 + CT-rich Low_complexity Low_complexity 2 99 0 25 75 0 0 chr13 79652523 79652576 -40092322 + AT_rich Low_complexity Low_complexity 1 53 0 271 304 54 36 chr13 79652898 79653010 -40091888 - MIR SINE MIR -137 125 12 181 315 55 0 chr13 79653108 79653181 -40091717 + L2 LINE L2 2772 2848 -466 1072 278 61 63 chr13 79653181 79653236 -40091662 + L1MEd LINE L1 417 471 -5648 2329 111 48 17 chr13 79653236 79653587 -40091311 - THE1B LTR MaLR 0 364 3 1072 278 61 63 chr13 79653587 79654351 -40090547 + L1MEd LINE L1 471 1234 -4885 367 310 81 6 chr13 79655218 79655392 -40089506 + MIR SINE MIR 6 192 -70 1732 150 42 14 chr13 79655433 79655720 -40089178 - AluSx SINE Alu -17 295 1 2222 104 3 0 chr13 79656278 79656576 -40088322 - AluSq SINE Alu -14 299 1 354 74 0 0 chr13 79657625 79657679 -40087219 + (TTTAA)n Simple_repeat Simple_repeat 3 56 0 22 35 0 0 chr13 79658096 79658125 -40086773 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr13 79658305 79658327 -40086571 + (T)n Simple_repeat Simple_repeat 1 22 0 231 88 0 0 chr13 79658357 79658391 -40086507 + (TAA)n Simple_repeat Simple_repeat 3 36 0 502 241 141 24 chr13 79658441 79658731 -40086167 - L1ME4a LINE L1 -15 6106 5783 1570 131 51 111 chr13 79659603 79659955 -40084943 + L1MB2 LINE L1 5688 6018 -153 210 128 0 0 chr13 79659964 79660003 -40084895 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2117 88 0 11 chr13 79660005 79660290 -40084608 - AluY SINE Alu -29 282 1 2272 84 10 7 chr13 79660292 79660590 -40084308 - AluSx SINE Alu -13 299 1 196 241 207 52 chr13 79661522 79661638 -40083260 - MIR3 SINE MIR -45 163 30 22 0 0 0 chr13 79662142 79662164 -40082734 + AT_rich Low_complexity Low_complexity 1 22 0 1476 248 95 41 chr13 79662427 79663037 -40081861 + L1ME2 LINE L1 3743 4385 -1761 4226 176 48 17 chr13 79663038 79663956 -40080942 + L1MD2 LINE L1 5204 6151 -208 814 209 14 9 chr13 79663989 79664200 -40080698 + L1ME2 LINE L1 4358 4569 -1577 * 1202 203 62 12 chr13 79664197 79664592 -40080306 + L1ME2 LINE L1 5197 5606 -560 2308 78 14 0 chr13 79664592 79664886 -40080012 + AluSp SINE Alu 1 298 -15 447 199 85 50 chr13 79665316 79665457 -40079441 + MER68 LTR ERV1 381 526 -36 814 218 36 90 chr13 79665554 79665780 -40079118 + L1ME2 LINE L1 5806 6010 -154 2320 96 6 6 chr13 79665780 79666092 -40078806 + AluSx SINE Alu 1 312 0 814 218 36 90 chr13 79666092 79666200 -40078698 + L1ME2 LINE L1 6010 6122 -42 457 363 101 20 chr13 79666241 79666588 -40078310 - L2 LINE L2 -1859 1455 1081 2129 173 51 58 chr13 79666589 79667076 -40077822 + MLT1D LTR MaLR 1 484 -21 470 46 15 0 chr13 79667208 79667273 -40077625 + (TA)n Simple_repeat Simple_repeat 1 66 0 344 286 12 0 chr13 79667433 79667517 -40077381 + L2 LINE L2 3188 3272 0 254 278 83 56 chr13 79667928 79668072 -40076826 + MLT1K LTR MaLR 66 213 -375 231 274 20 39 chr13 79668183 79668240 -40076658 + MLT1K LTR MaLR 381 437 -151 2333 83 3 0 chr13 79668240 79668541 -40076357 - AluSc SINE Alu -7 302 1 231 274 20 39 chr13 79668541 79668585 -40076313 + MLT1K LTR MaLR 437 480 -108 205 324 81 0 chr13 79668876 79668950 -40075948 + L3 LINE CR1 1486 1565 -12 1590 175 95 0 chr13 79669247 79669532 -40075366 + AluJo SINE Alu 1 312 0 682 357 71 42 chr13 79670858 79671639 -40073259 + L2 LINE L2 2457 3257 -15 246 358 58 8 chr13 79671969 79672089 -40072809 + L2 LINE L2 3147 3272 0 22 56 0 0 chr13 79672973 79673009 -40071889 + AT_rich Low_complexity Low_complexity 1 36 0 1138 227 107 7 chr13 79673369 79673677 -40071221 - MER58B DNA MER1_type 0 341 3 2302 88 0 25 chr13 79674242 79674560 -40070338 + AluSx SINE Alu 1 310 -2 803 278 87 52 chr13 79674962 79675091 -40069807 + L1MEc LINE L1 1030 1153 -5229 198 0 0 0 chr13 79675091 79675113 -40069785 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 803 278 87 52 chr13 79675113 79675763 -40069135 + L1MEc LINE L1 1153 1792 -4590 3013 230 68 58 chr13 79675808 79676163 -40068735 + L1MB7 LINE L1 2512 2862 -3558 2225 85 0 0 chr13 79676163 79676464 -40068434 + AluSg SINE Alu 1 301 0 3013 230 68 58 chr13 79676464 79677078 -40067820 + L1MB7 LINE L1 2862 3469 -2951 4395 133 52 11 chr13 79677078 79677869 -40067029 + L1MA5 LINE L1 5475 6297 -3 3013 230 68 58 chr13 79677869 79678774 -40066124 + L1MB7 LINE L1 3469 6392 -28 1019 250 72 28 chr13 79678855 79679315 -40065583 + L1MEc LINE L1 4082 4561 -1821 572 300 115 32 chr13 79679849 79680249 -40064649 + L1MEd LINE L1 1154 1586 -5048 1543 134 0 0 chr13 79680541 79680764 -40064134 + AluJo SINE Alu 88 310 -2 185 325 65 58 chr13 79680822 79681114 -40063784 + L2 LINE L2 1884 2177 -1137 765 250 148 5 chr13 79681490 79681706 -40063192 + MIR SINE MIR 16 262 0 1316 261 108 11 chr13 79681730 79682175 -40062723 - LTR16C LTR ERVL -3 488 1 228 338 94 62 chr13 79682724 79682941 -40061957 + L2 LINE L2 2524 2758 -556 2206 123 0 0 chr13 79682941 79683249 -40061649 + AluSc SINE Alu 1 308 -1 228 338 94 62 chr13 79683249 79683383 -40061515 + L2 LINE L2 2758 2886 -428 990 239 5 10 chr13 79683465 79683662 -40061236 + MER58A DNA MER1_type 1 196 -28 324 276 35 23 chr13 79683702 79683876 -40061022 + L1MEd LINE L1 1504 1679 -4863 332 262 80 119 chr13 79683986 79684372 -40060526 + L1ME LINE L1 2 372 -5698 2525 255 88 56 chr13 79684398 79686003 -40058895 + L1ME LINE L1 542 2200 -3880 963 268 82 3 chr13 79685989 79686533 -40058365 + L1ME LINE L1 2529 3145 -2935 * 2340 163 35 48 chr13 79686531 79687296 -40057602 + L1MC1 LINE L1 4927 5676 -657 428 167 10 21 chr13 79687296 79687391 -40057507 + L1MA8 LINE L1 6197 6291 0 3442 157 30 24 chr13 79687391 79688057 -40056841 + L1MC1 LINE L1 5661 6333 0 1979 258 96 65 chr13 79688062 79688722 -40056176 + L1ME LINE L1 3235 3944 -2136 2194 126 0 0 chr13 79688722 79689024 -40055874 + AluSx SINE Alu 1 302 -10 1979 258 96 65 chr13 79689024 79689442 -40055456 + L1ME LINE L1 3944 4347 -1733 2122 134 0 6 chr13 79690049 79690362 -40054536 - AluSx SINE Alu -1 311 1 325 305 132 71 chr13 79690598 79690768 -40054130 - HERV16 LTR ERVL -1052 4712 4554 2192 96 0 0 chr13 79690768 79691050 -40053848 + AluSg SINE Alu 1 282 -28 621 0 0 0 chr13 79691050 79691119 -40053779 + (CATAA)n Simple_repeat Simple_repeat 4 72 0 325 305 132 71 chr13 79691119 79691272 -40053626 - HERV16 LTR ERVL -1209 4555 4368 424 281 10 0 chr13 79691307 79691403 -40053495 - HERV16 LTR ERVL -1483 4281 4185 2406 185 70 27 chr13 79691407 79691585 -40053313 - MER119 DNA MER1_type -43 540 371 2212 109 0 0 chr13 79691585 79691887 -40053011 + AluSg SINE Alu 1 302 -8 2406 185 70 27 chr13 79691887 79692221 -40052677 - MER119 DNA MER1_type -212 371 6 183 42 0 0 chr13 79692221 79692245 -40052653 + (TG)n Simple_repeat Simple_repeat 2 25 0 637 241 206 18 chr13 79692247 79692529 -40052369 - HERV16 LTR ERVL -4153 843 509 784 229 75 32 chr13 79692715 79692994 -40051904 - HERV16 LTR ERVL -4705 291 1 1170 274 47 27 chr13 79693008 79693413 -40051485 - LTR16A LTR ERVL -11 439 27 787 277 62 30 chr13 79693464 79693894 -40051004 + L1MC4 LINE L1 7022 7474 -568 232 197 115 49 chr13 79693864 79693986 -40050912 + L1MC5 LINE L1 7269 7398 -563 * 648 228 199 19 chr13 79694007 79694213 -40050685 + L1ME1 LINE L1 5916 6158 -8 1064 155 11 5 chr13 79694844 79695031 -40049867 + AluJb SINE Alu 119 306 -6 203 136 45 0 chr13 79695987 79696031 -40048867 + A-rich Low_complexity Low_complexity 2 47 0 409 169 87 10 chr13 79696045 79696282 -40048616 + AluJo SINE Alu 6 301 -11 216 315 45 11 chr13 79696441 79696530 -40048368 - MIR SINE MIR -70 192 101 183 42 0 0 chr13 79696833 79696857 -40048041 + (TG)n Simple_repeat Simple_repeat 1 24 0 1673 134 54 31 chr13 79696857 79697213 -40047685 - L1MA8 LINE L1 -140 6151 5783 397 235 250 0 chr13 79697865 79698001 -40046897 + MIR SINE MIR 91 260 -2 2034 128 3 29 chr13 79698247 79698559 -40046339 - AluSx SINE Alu -8 304 1 313 259 105 42 chr13 79698559 79698594 -40046304 - L1M4 LINE L1 -804 5342 5311 907 308 57 37 chr13 79698594 79699049 -40045849 - LTR16B LTR ERVL 0 464 1 313 259 105 42 chr13 79699049 79699156 -40045742 - L1M4 LINE L1 -835 5311 5191 1372 251 63 47 chr13 79699704 79699948 -40044950 + LTR40a LTR ERVL 1 240 -279 2313 96 7 13 chr13 79699948 79700250 -40044648 + AluSp SINE Alu 1 300 -13 1372 251 63 47 chr13 79700250 79700516 -40044382 + LTR40a LTR ERVL 240 519 0 361 318 20 7 chr13 79701031 79701179 -40043719 - MLT1H LTR MaLR -397 152 3 270 277 99 10 chr13 79703729 79703830 -40041068 - L2 LINE L2 0 3272 3163 377 270 70 10 chr13 79703954 79704054 -40040844 - MIR SINE MIR -150 112 7 24 32 0 0 chr13 79704563 79704594 -40040304 + AT_rich Low_complexity Low_complexity 1 31 0 225 196 0 0 chr13 79705688 79705734 -40039164 + (CGG)n Simple_repeat Simple_repeat 1 46 0 231 114 0 0 chr13 79705806 79705841 -40039057 + (GGA)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr13 79705957 79705982 -40038916 + (CGG)n Simple_repeat Simple_repeat 2 26 0 396 0 0 0 chr13 79706479 79706523 -40038375 + (TG)n Simple_repeat Simple_repeat 2 45 0 184 408 53 0 chr13 79708940 79709016 -40035882 + L2 LINE L2 3153 3232 -40 730 295 163 11 chr13 79709030 79709386 -40035512 - L2 LINE L2 -23 3290 2881 645 238 41 7 chr13 79709485 79709632 -40035266 + MIR SINE MIR 1 152 -110 778 223 131 109 chr13 79709827 79710339 -40034559 - LTR33A LTR ERVL 0 523 1 301 254 24 73 chr13 79711191 79711356 -40033542 - MIR SINE MIR -2 260 104 5974 72 7 32 chr13 79711546 79711573 -40033325 + L1MA1 LINE L1 5447 5473 -829 2284 97 7 3 chr13 79711573 79711883 -40033015 + AluSx SINE Alu 1 311 -1 5974 72 7 32 chr13 79711883 79712727 -40032171 + L1MA1 LINE L1 5473 6296 -6 473 248 26 8 chr13 79713257 79713374 -40031524 - AluJb SINE Alu -191 121 3 526 289 52 23 chr13 79713421 79713764 -40031134 - L1MC4 LINE L1 0 8042 7690 976 190 0 17 chr13 79713845 79714024 -40030874 + FRAM SINE Alu 1 176 0 307 202 125 0 chr13 79714105 79714209 -40030689 - L1MC5 LINE L1 -553 7408 7292 308 266 106 32 chr13 79714256 79714444 -40030454 - L1MC4a LINE L1 -465 7343 7142 1454 201 32 46 chr13 79714645 79715018 -40029880 + MLT1A2 LTR MaLR 3 370 -4 260 320 72 18 chr13 79715252 79715474 -40029424 - L1ME LINE L1 -388 5733 5500 26 0 0 0 chr13 79715488 79715514 -40029384 + AT_rich Low_complexity Low_complexity 1 26 0 2192 126 3 0 chr13 79716512 79716822 -40028076 - AluSx SINE Alu 0 312 2 480 196 122 21 chr13 79718626 79718815 -40026083 - L1MC5 LINE L1 -109 7852 7645 1961 120 19 48 chr13 79718815 79719176 -40025722 - AluSc SINE Alu 0 352 1 306 259 280 27 chr13 79719176 79719508 -40025390 - L1MC5 LINE L1 -296 7665 7250 186 43 0 0 chr13 79719649 79719672 -40025226 + (TTCTCC)n Simple_repeat Simple_repeat 1 23 0 1586 157 10 83 chr13 79719672 79719984 -40024914 - AluJo SINE Alu -23 289 1 824 239 88 77 chr13 79719985 79720599 -40024299 - L1MC5 LINE L1 -730 7231 6611 361 325 98 27 chr13 79720903 79721269 -40023629 - ERVL LTR ERVL -4546 1218 827 21 57 0 0 chr13 79721621 79721656 -40023242 + AT_rich Low_complexity Low_complexity 1 35 0 459 237 97 91 chr13 79721852 79722160 -40022738 - LTR67 LTR ERVL -3 554 245 2153 116 7 0 chr13 79722497 79722791 -40022107 - AluSx SINE Alu -16 296 1 1011 186 54 23 chr13 79723485 79723706 -40021192 + Charlie1a DNA MER1_type 1 228 -1227 357 24 0 0 chr13 79724946 79724988 -40019910 + (CA)n Simple_repeat Simple_repeat 2 43 0 1091 163 0 0 chr13 79725201 79725367 -40019531 + AluSg/x SINE Alu 145 310 -2 260 207 85 12 chr13 79727055 79727137 -40017761 - MER20B DNA MER1_type -6 777 690 614 235 9 16 chr13 79727186 79727402 -40017496 - MER20B DNA MER1_type -204 579 315 423 256 140 39 chr13 79727460 79727927 -40016971 + MLT1H LTR MaLR 6 555 0 993 286 15 0 chr13 79727930 79728192 -40016706 - MER20B DNA MER1_type -504 279 14 1629 184 0 26 chr13 79728330 79728635 -40016263 + AluJo SINE Alu 1 297 -15 225 298 106 53 chr13 79728663 79728871 -40016027 - L2 LINE L2 -172 3100 2882 386 264 36 7 chr13 79728974 79729114 -40015784 + MLT1J2 LTR MaLR 74 217 -233 826 271 106 34 chr13 79729232 79729466 -40015432 - LTR33 LTR ERVL -1 520 304 2257 107 0 25 chr13 79729466 79729783 -40015115 + AluSx SINE Alu 1 309 -3 826 271 106 34 chr13 79729783 79730021 -40014877 - LTR33 LTR ERVL -217 304 14 1143 144 32 106 chr13 79730104 79730452 -40014446 - L1MB7 LINE L1 0 6184 5863 402 222 11 0 chr13 79730464 79730554 -40014344 - MER31A LTR ERV1 -39 446 356 419 216 0 0 chr13 79730554 79730642 -40014256 - L1MB7 LINE L1 -302 5876 5789 937 313 28 28 chr13 79731711 79732145 -40012753 - LTR16A LTR ERVL -16 434 1 493 341 54 29 chr13 79732244 79732885 -40012013 - HERV16 LTR ERVL -361 5403 4726 1773 329 63 53 chr13 79732916 79733002 -40011896 - HERV16 LTR ERVL -1041 4613 4529 1943 146 81 113 chr13 79733002 79733522 -40011376 - MLT1D LTR MaLR -2 503 1 1773 329 63 53 chr13 79733522 79735048 -40009850 - HERV16 LTR ERVL -1125 4529 2985 272 267 47 47 chr13 79735149 79735321 -40009577 - HERV16 LTR ERVL -4717 279 108 1839 247 98 25 chr13 79735351 79735902 -40008996 - MLT1E LTR MaLR -2 591 1 1040 308 28 24 chr13 79735997 79736423 -40008475 - LTR16A LTR ERVL -6 444 17 32316 73 1 8 chr13 79736762 79742203 -40002695 + L1PA6 LINE L1 743 6142 -12 25 31 0 0 chr13 79742203 79742235 -40002663 + AT_rich Low_complexity Low_complexity 1 32 0 6817 59 8 0 chr13 79742751 79744238 -40000660 - L1PA7 LINE L1 0 6154 4675 236 333 57 19 chr13 79744241 79744346 -40000552 - L2 LINE L2 -9 3263 3155 304 320 0 0 chr13 79744351 79744429 -40000469 + L2 LINE L2 3235 3312 -1 1979 124 0 0 chr13 79744637 79744924 -39999974 + AluSx SINE Alu 18 304 0 940 194 0 0 chr13 79745930 79746090 -39998808 + FAM SINE Alu 10 169 -16 22 88 0 0 chr13 79746361 79746418 -39998480 + AT_rich Low_complexity Low_complexity 1 57 0 604 280 154 34 chr13 79747204 79747634 -39997264 + MLT1H LTR MaLR 32 547 -8 615 335 60 50 chr13 79748432 79748933 -39995965 + L1MEd LINE L1 614 1119 -5000 1158 270 93 16 chr13 79748994 79749361 -39995537 + MLT1H1 LTR MaLR 12 406 -149 1661 192 26 11 chr13 79749568 79749948 -39994950 - MER58D DNA MER1_type 0 386 1 2242 130 37 14 chr13 79750130 79750485 -39994413 + THE1B LTR MaLR 2 364 0 2013 162 37 18 chr13 79752289 79752467 -39992431 + MLT1B LTR MaLR 1 174 -216 2247 91 3 3 chr13 79752467 79752764 -39992134 + AluSx SINE Alu 1 297 -15 2013 162 37 18 chr13 79752764 79752857 -39992041 + MLT1B LTR MaLR 174 264 -126 4563 107 6 9 chr13 79752857 79753523 -39991375 - MER4A LTR ERV1 0 664 1 2013 162 37 18 chr13 79753523 79753633 -39991265 + MLT1B LTR MaLR 264 390 0 205 351 54 0 chr13 79753726 79753800 -39991098 + L2 LINE L2 3236 3313 0 26 50 0 0 chr13 79753864 79753904 -39990994 + AT_rich Low_complexity Low_complexity 1 40 0 2009 205 93 4 chr13 79753996 79754460 -39990438 - MLT1D LTR MaLR 0 505 1 4542 92 29 2 chr13 79754860 79754950 -39989948 + L1MA4A LINE L1 5367 5453 -850 4542 121 16 14 chr13 79754950 79755692 -39989206 + L1MA4A LINE L1 5549 6292 -11 4542 92 29 2 chr13 79755692 79755717 -39989181 + L1MA4A LINE L1 5453 6292 -11 698 191 0 24 chr13 79755718 79755844 -39989054 + FLAM_C SINE Alu 1 123 -20 22 56 0 0 chr13 79755846 79755882 -39989016 + AT_rich Low_complexity Low_complexity 1 36 0 2910 114 14 2 chr13 79756237 79756666 -39988232 + MER57B LTR ERV1 1 434 0 3913 119 17 21 chr13 79756862 79757515 -39987383 - MER39B LTR ERV1 -3 650 1 499 312 0 0 chr13 79757644 79757769 -39987129 + MIR3 SINE MIR 77 201 -7 4002 76 2 9 chr13 79757961 79758501 -39986397 - L1PB1 LINE L1 0 6151 5616 6434 156 18 5 chr13 79758514 79758942 -39985956 + L1PB1 LINE L1 3975 4396 -1755 189 0 0 0 chr13 79758942 79758963 -39985935 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6434 156 18 5 chr13 79758963 79760683 -39984215 + L1PB1 LINE L1 4396 6148 -3 22 0 0 0 chr13 79760719 79760741 -39984157 + AT_rich Low_complexity Low_complexity 1 22 0 661 271 78 84 chr13 79764984 79765577 -39979321 - L1ME4a LINE L1 -112 6009 5421 1599 167 13 57 chr13 79765597 79765915 -39978983 - AluSx SINE Alu -3 309 6 186 43 0 0 chr13 79766666 79766689 -39978209 + (TG)n Simple_repeat Simple_repeat 1 23 0 246 232 0 0 chr13 79768825 79768881 -39976017 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 288 243 71 0 chr13 79769050 79769120 -39975778 + MIR SINE MIR 174 248 -14 33 43 0 0 chr13 79769610 79769657 -39975241 + AT_rich Low_complexity Low_complexity 1 47 0 1850 145 24 3 chr13 79769673 79769970 -39974928 + Tigger1 DNA MER2_type 1 303 -2115 21 82 0 0 chr13 79770410 79770459 -39974439 + AT_rich Low_complexity Low_complexity 1 49 0 457 242 114 0 chr13 79771466 79771598 -39973300 + L2 LINE L2 3111 3257 -15 2050 116 0 33 chr13 79772282 79772585 -39972313 - AluSx SINE Alu -19 293 1 364 273 115 14 chr13 79772665 79772804 -39972094 + MIR SINE MIR 110 262 0 6383 111 13 10 chr13 79774018 79775013 -39969885 - L1MA3 LINE L1 0 6305 5308 23 33 0 0 chr13 79776004 79776034 -39968864 + AT_rich Low_complexity Low_complexity 1 30 0 3908 148 51 27 chr13 79776277 79777059 -39967839 + L1MA4 LINE L1 5489 6289 -11 350 277 83 27 chr13 79777415 79777602 -39967296 - L1ME3 LINE L1 -278 5884 5710 227 170 189 0 chr13 79777701 79777754 -39967144 - L1ME3 LINE L1 -555 5566 5504 666 220 63 19 chr13 79777813 79777972 -39966926 - L1ME3A LINE L1 0 6170 6005 1191 222 59 9 chr13 79777987 79778311 -39966587 - L1ME3A LINE L1 -211 5959 5620 322 206 82 14 chr13 79779289 79779362 -39965536 + MER58B DNA MER1_type 263 340 -1 241 65 0 0 chr13 79780517 79780548 -39964350 - U2 snRNA snRNA -152 36 6 22 0 0 0 chr13 79780577 79780599 -39964299 + AT_rich Low_complexity Low_complexity 1 22 0 2702 7 0 0 chr13 79781319 79781616 -39963282 - AluYa5 SINE Alu -14 297 1 713 199 0 7 chr13 79781863 79782004 -39962894 + FLAM_C SINE Alu 1 140 -3 6373 179 49 23 chr13 79782268 79783403 -39961495 - L1MB3 LINE L1 -8 6175 5071 1567 51 0 0 chr13 79783403 79783600 -39961298 - L1PA4 LINE L1 0 6155 5959 6373 179 49 23 chr13 79783600 79784886 -39960012 - L1MB3 LINE L1 -1112 5071 3683 803 145 23 12 chr13 79784904 79785076 -39959822 + CT-rich Low_complexity Low_complexity 3 176 0 402 229 59 8 chr13 79785089 79785207 -39959691 - L1MB3 LINE L1 -2451 3695 3572 270 239 0 0 chr13 79785663 79785734 -39959164 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 351 0 0 0 chr13 79785774 79785813 -39959085 + (TG)n Simple_repeat Simple_repeat 2 40 0 6517 59 21 1 chr13 79785813 79786659 -39958239 - L1PA7 LINE L1 -17 6137 5275 3631 54 6 8 chr13 79786660 79787139 -39957759 - L1P LINE L1 -774 5372 4895 2238 114 0 3 chr13 79787920 79788228 -39956670 - AluSx SINE Alu -5 307 1 2241 99 0 7 chr13 79789145 79789448 -39955450 + AluSc SINE Alu 1 301 -8 2006 138 0 0 chr13 79790919 79791233 -39953665 - AluSx SINE Alu 0 314 1 22 35 0 0 chr13 79791425 79791454 -39953444 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 79791717 79791744 -39953154 + AT_rich Low_complexity Low_complexity 1 27 0 663 216 64 18 chr13 79791794 79791965 -39952933 + MER5A DNA MER1_type 4 182 -7 2020 102 39 0 chr13 79792427 79792710 -39952188 - AluSx SINE Alu -18 294 1 2437 81 0 0 chr13 79793287 79793596 -39951302 - AluY SINE Alu -1 310 2 336 229 219 34 chr13 79793716 79793921 -39950977 - L1ME4a LINE L1 -43 6078 5836 570 283 89 48 chr13 79794240 79794652 -39950246 - L1MC4a LINE L1 -1886 5922 5485 713 156 0 16 chr13 79794652 79794808 -39950090 - FLAM_A SINE Alu 0 155 2 570 283 89 48 chr13 79794808 79794875 -39950023 - L1MC4a LINE L1 -2323 5485 5422 651 257 88 11 chr13 79794918 79795179 -39949719 - L1ME4a LINE L1 -303 5818 5538 233 365 77 17 chr13 79795372 79795553 -39949345 + L2 LINE L2 2550 2741 -573 289 294 75 75 chr13 79795741 79795969 -39948929 + L2 LINE L2 3044 3271 -1 28 0 0 0 chr13 79797444 79797472 -39947426 + AT_rich Low_complexity Low_complexity 1 28 0 201 121 0 0 chr13 79797530 79797563 -39947335 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 285 75 0 0 chr13 79797658 79797698 -39947200 + (TC)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr13 79798373 79798401 -39946497 + GC_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 79799351 79799377 -39945521 + AT_rich Low_complexity Low_complexity 1 26 0 1371 121 4 88 chr13 79800220 79800469 -39944429 + AluSx SINE Alu 1 228 -84 1073 158 103 5 chr13 79800815 79801018 -39943880 + Tigger4(Zombi) DNA MER2_type 1 223 -2508 1848 116 33 13 chr13 79801021 79801323 -39943575 + Tigger4(Zombi) DNA MER2_type 2424 2731 0 398 295 68 68 chr13 79801962 79802199 -39942699 + MIR SINE MIR 26 262 0 329 262 40 63 chr13 79802368 79802494 -39942404 + MIR SINE MIR 84 206 -56 466 306 56 22 chr13 79802518 79802698 -39942200 - MIR SINE MIR -71 191 6 206 218 36 0 chr13 79802924 79802979 -39941919 + (TA)n Simple_repeat Simple_repeat 2 58 0 333 0 0 0 chr13 79803037 79803074 -39941824 + (CA)n Simple_repeat Simple_repeat 2 38 0 2008 151 0 3 chr13 79803243 79803542 -39941356 - AluJb SINE Alu -14 298 1 28 0 0 0 chr13 79803699 79803727 -39941171 + AT_rich Low_complexity Low_complexity 1 28 0 474 18 0 0 chr13 79804247 79804302 -39940596 + (TG)n Simple_repeat Simple_repeat 2 56 0 222 191 0 0 chr13 79807352 79807399 -39937499 + T-rich Low_complexity Low_complexity 4 50 0 995 276 146 23 chr13 79807807 79808239 -39936659 + MLT1J LTR MaLR 7 491 -20 837 251 66 65 chr13 79808301 79808673 -39936225 - LTR16B LTR ERVL -2 462 22 442 164 28 202 chr13 79809002 79809215 -39935683 - MER5B DNA MER1_type -1 177 2 1893 162 21 9 chr13 79809628 79809967 -39934931 - MER2 DNA MER2_type 0 344 2 394 262 39 0 chr13 79811309 79811412 -39933486 + MIR SINE MIR 33 139 -123 192 371 90 31 chr13 79811489 79811745 -39933153 + L2 LINE L2 960 1230 -2084 22 0 0 0 chr13 79812879 79812901 -39931997 + AT_rich Low_complexity Low_complexity 1 22 0 776 310 11 41 chr13 79813042 79813310 -39931588 - MIR SINE MIR -1 261 2 209 319 138 0 chr13 79813600 79813694 -39931204 + L2 LINE L2 3158 3264 -8 21 36 0 0 chr13 79814010 79814038 -39930860 + AT_rich Low_complexity Low_complexity 1 28 0 2805 250 134 38 chr13 79814627 79815884 -39929014 - L1MC4 LINE L1 -1 8041 6907 1700 186 20 7 chr13 79815884 79816180 -39928718 + AluJb SINE Alu 1 300 -12 2805 250 134 38 chr13 79816180 79816837 -39928061 - L1MC4 LINE L1 -1135 6907 6315 1772 186 42 0 chr13 79816837 79817171 -39927727 + MER7A DNA MER2_type 1 346 0 2805 250 134 38 chr13 79817171 79817632 -39927266 - L1MC4 LINE L1 -1727 6315 5441 2159 120 0 10 chr13 79818271 79818572 -39926326 - AluSx SINE Alu -14 298 1 22 56 0 0 chr13 79819406 79819442 -39925456 + AT_rich Low_complexity Low_complexity 1 36 0 415 291 121 6 chr13 79820234 79820416 -39924482 + MIR SINE MIR 4 206 -56 22 0 0 0 chr13 79820416 79820438 -39924460 + AT_rich Low_complexity Low_complexity 1 22 0 699 229 33 0 chr13 79820754 79820907 -39923991 + MIR SINE MIR 1 158 -104 2490 47 27 0 chr13 79821273 79821571 -39923327 + AluY SINE Alu 1 306 -5 449 312 47 51 chr13 79823164 79823440 -39921458 - L1MC4a LINE L1 -1927 5881 5607 891 172 21 130 chr13 79823453 79823738 -39921160 - MER4C LTR ERV1 -10 455 202 236 181 14 83 chr13 79823720 79823792 -39921106 - MER4A LTR ERV1 -318 346 280 * 261 247 0 35 chr13 79823939 79824024 -39920874 + L1M4c LINE L1 1431 1512 -4872 790 206 38 5 chr13 79824140 79824324 -39920574 - L1MB2 LINE L1 -1 6170 5981 31 76 0 0 chr13 79825413 79825479 -39919419 + AT_rich Low_complexity Low_complexity 1 66 0 25 0 0 0 chr13 79826562 79826587 -39918311 + AT_rich Low_complexity Low_complexity 1 25 0 42449 34 21 2 chr13 79826703 79832737 -39912161 - L1PA3 LINE L1 0 6155 1 436 282 84 24 chr13 79834028 79834241 -39910657 + L2 LINE L2 2037 2262 -1052 3686 268 71 17 chr13 79834508 79835679 -39909219 + L2 LINE L2 1792 3022 -291 363 256 12 0 chr13 79835748 79835834 -39909064 + L2 LINE L2 3220 3306 -7 1944 129 18 0 chr13 79836164 79836450 -39908448 - AluSx SINE Alu -21 291 1 279 267 69 40 chr13 79837009 79837110 -39907788 - MIR SINE MIR -46 216 113 25 0 0 0 chr13 79837652 79837677 -39907221 + AT_rich Low_complexity Low_complexity 1 25 0 246 81 0 0 chr13 79838591 79838628 -39906270 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2042 136 0 0 chr13 79838631 79838918 -39905980 - AluSx SINE Alu -25 287 1 691 254 80 9 chr13 79839365 79839578 -39905320 - MIR SINE MIR -27 235 8 513 307 82 22 chr13 79840175 79840406 -39904492 + L3 LINE CR1 927 1171 -406 270 337 59 0 chr13 79840567 79840668 -39904230 - MIR SINE MIR -61 201 95 355 300 105 35 chr13 79840757 79840957 -39903941 + L3 LINE CR1 1251 1464 -113 23 86 0 0 chr13 79841995 79842053 -39902845 + AT_rich Low_complexity Low_complexity 1 58 0 28 0 0 0 chr13 79842602 79842630 -39902268 + AT_rich Low_complexity Low_complexity 1 28 0 2228 67 0 79 chr13 79843672 79844000 -39900898 - AluSg SINE Alu -8 302 1 1858 149 7 20 chr13 79844661 79844962 -39899936 + AluJb SINE Alu 7 303 -9 4700 239 77 29 chr13 79847046 79847919 -39896979 + L1M4 LINE L1 2419 3249 -2897 2175 112 16 0 chr13 79847919 79848223 -39896675 + AluSx SINE Alu 3 311 -1 4700 239 77 29 chr13 79848223 79848988 -39895910 + L1M4 LINE L1 3249 4135 -2011 22 70 0 0 chr13 79850202 79850245 -39894653 + AT_rich Low_complexity Low_complexity 1 43 0 296 89 0 22 chr13 79850342 79850387 -39894511 - L1MC4 LINE L1 -134 7908 7865 1495 193 30 17 chr13 79850830 79851126 -39893772 - AluJb SINE Alu -12 300 1 621 108 0 20 chr13 79852110 79852212 -39892686 - L1MB3 LINE L1 -1 6182 6083 23 0 0 0 chr13 79852557 79852580 -39892318 + AT_rich Low_complexity Low_complexity 1 23 0 1812 139 68 17 chr13 79854146 79854440 -39890458 + AluJb SINE Alu 3 311 -1 33 43 0 0 chr13 79855024 79855071 -39889827 + AT_rich Low_complexity Low_complexity 1 47 0 181 172 0 0 chr13 79855396 79855425 -39889473 - L2 LINE L2 -15 3298 3270 354 309 128 25 chr13 79855491 79855695 -39889203 + MIR SINE MIR 32 256 -6 207 0 0 0 chr13 79855750 79855773 -39889125 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2112 117 13 7 chr13 79855778 79856087 -39888811 - AluSx SINE Alu -1 311 1 1155 222 105 19 chr13 79856534 79856800 -39888098 + AluJb SINE Alu 2 290 -12 361 15 76 0 chr13 79856800 79856866 -39888032 + (TA)n Simple_repeat Simple_repeat 2 72 0 984 264 44 0 chr13 79856892 79857119 -39887779 + MIR SINE MIR 18 254 -8 330 198 121 43 chr13 79858593 79858709 -39886189 + L2 LINE L2 2194 2318 -996 636 320 59 5 chr13 79858731 79858953 -39885945 - MIR SINE MIR -26 236 3 1319 302 90 22 chr13 79859025 79859568 -39885330 + L2 LINE L2 2426 3023 -290 2164 103 3 0 chr13 79859568 79859850 -39885048 + AluSg SINE Alu 1 283 -27 1319 302 90 22 chr13 79859850 79860018 -39884880 + L2 LINE L2 3023 3178 -135 2254 104 0 0 chr13 79860891 79861188 -39883710 + AluSg SINE Alu 1 297 -13 253 300 25 25 chr13 79861214 79861294 -39883604 - MER5A DNA MER1_type 0 189 110 552 253 137 32 chr13 79861518 79861708 -39883190 - MIR SINE MIR 0 262 53 554 256 54 103 chr13 79861724 79861947 -39882951 + MIR SINE MIR 47 258 -4 21 36 0 0 chr13 79862182 79862210 -39882688 + AT_rich Low_complexity Low_complexity 1 28 0 2365 38 41 0 chr13 79862349 79862639 -39882259 - AluY SINE Alu -9 302 1 527 214 194 65 chr13 79863911 79864313 -39880585 - L1MC5 LINE L1 -56 7905 7452 572 248 4 16 chr13 79864336 79864501 -39880397 - L1MC5 LINE L1 -924 6884 6720 210 219 0 0 chr13 79864518 79864582 -39880316 + (TA)n Simple_repeat Simple_repeat 1 64 0 279 0 0 0 chr13 79864739 79864770 -39880128 + (TG)n Simple_repeat Simple_repeat 1 31 0 378 74 0 0 chr13 79864918 79864972 -39879926 + (TG)n Simple_repeat Simple_repeat 2 55 0 651 179 81 0 chr13 79866778 79866901 -39877997 + FLAM_C SINE Alu 1 133 0 633 323 167 21 chr13 79867781 79868313 -39876585 - L2 LINE L2 -975 2339 1730 251 294 24 12 chr13 79868497 79868582 -39876316 + CT-rich Low_complexity Low_complexity 5 90 0 495 278 124 17 chr13 79868661 79868952 -39875946 + L1MC4a LINE L1 5576 5897 -1911 2173 97 0 4 chr13 79869000 79869278 -39875620 + AluSc SINE Alu 17 293 -16 562 260 148 5 chr13 79871487 79871683 -39873215 - MIR SINE MIR 0 262 39 1380 77 87 0 chr13 79871690 79871873 -39873025 + AluSp SINE Alu 103 301 -12 194 268 71 0 chr13 79872028 79872084 -39872814 - L2 LINE L2 -8 3305 3246 1629 124 121 49 chr13 79872100 79872448 -39872450 - THE1C LTR MaLR -2 373 1 431 303 86 41 chr13 79872602 79872823 -39872075 - MIR SINE MIR -1 261 31 1901 139 14 17 chr13 79873191 79873486 -39871412 + AluJo SINE Alu 1 294 -18 28 71 0 0 chr13 79873765 79873821 -39871077 + AT_rich Low_complexity Low_complexity 1 56 0 1272 154 9 27 chr13 79874170 79874391 -39870507 - AluJb SINE Alu -11 301 85 1406 184 72 11 chr13 79874417 79874694 -39870204 + AluJb SINE Alu 3 296 -16 832 181 60 0 chr13 79874694 79874843 -39870055 + AluJb SINE Alu 134 291 -21 22 0 0 0 chr13 79874848 79874870 -39870028 + AT_rich Low_complexity Low_complexity 1 22 0 185 200 0 73 chr13 79876146 79876201 -39868697 + L2 LINE L2 3263 3313 0 23 33 0 0 chr13 79876494 79876524 -39868374 + AT_rich Low_complexity Low_complexity 1 30 0 328 330 101 59 chr13 79876904 79877310 -39867588 - L1 LINE L1 -816 5330 4908 273 146 0 0 chr13 79877402 79877450 -39867448 + (TG)n Simple_repeat Simple_repeat 2 49 0 291 206 52 93 chr13 79878842 79878939 -39865959 + L2 LINE L2 3203 3295 -18 1907 197 78 2 chr13 79880650 79881046 -39863852 + MSTB LTR MaLR 1 426 0 2024 169 68 24 chr13 79881143 79881557 -39863341 + MSTB1 LTR MaLR 1 432 0 4239 154 43 45 chr13 79882372 79883203 -39861695 + MER6 DNA MER2_type 36 865 0 30 0 0 0 chr13 79883882 79883912 -39860986 + AT_rich Low_complexity Low_complexity 1 30 0 343 311 154 18 chr13 79883919 79884199 -39860699 - L1ME4a LINE L1 -157 5964 5647 290 45 23 0 chr13 79884549 79884593 -39860305 + (TA)n Simple_repeat Simple_repeat 1 45 0 48 18 0 0 chr13 79884664 79884719 -39860179 + AT_rich Low_complexity Low_complexity 1 55 0 420 248 66 36 chr13 79885592 79885729 -39859169 + MIR SINE MIR 118 258 -4 1499 191 3 24 chr13 79886194 79886492 -39858406 - MER63B DNA MER1_type -144 292 1 1703 187 38 71 chr13 79886574 79886771 -39858127 + LTR40b LTR ERVL 2 204 -258 1980 127 3 30 chr13 79886771 79887070 -39857828 + AluSx SINE Alu 7 297 -15 1703 187 38 71 chr13 79887070 79887349 -39857549 + LTR40b LTR ERVL 204 462 0 2936 229 59 33 chr13 79889143 79889187 -39855711 + L1ME1 LINE L1 5102 5143 -1023 2054 197 0 3 chr13 79889187 79889553 -39855345 + MLT1A1 LTR MaLR 1 365 0 2936 229 59 33 chr13 79889553 79890527 -39854371 + L1ME1 LINE L1 5143 6160 -6 296 228 47 47 chr13 79890692 79890821 -39854077 + ALR/Alpha Satellite centromeric 1 129 -59 1783 146 29 0 chr13 79890894 79891196 -39853702 - AluSx SINE Alu 0 310 1 1516 150 4 64 chr13 79891330 79891610 -39853288 - MER66B LTR ERV1 0 486 224 561 242 0 0 chr13 79891608 79891728 -39853170 - MER66A LTR ERV1 -358 120 1 * 27 0 0 0 chr13 79893724 79893751 -39851147 + AT_rich Low_complexity Low_complexity 1 27 0 333 125 0 0 chr13 79893813 79893869 -39851029 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 710 136 23 28 chr13 79893887 79894064 -39850834 + GA-rich Low_complexity Low_complexity 3 178 0 757 263 39 59 chr13 79894478 79894938 -39849960 + L1MC5 LINE L1 7460 7910 -51 21 0 0 0 chr13 79894942 79894963 -39849935 + AT_rich Low_complexity Low_complexity 1 21 0 1501 178 32 18 chr13 79895170 79895451 -39849447 - AluJb SINE Alu -17 295 11 500 325 8 32 chr13 79895483 79895732 -39849166 - L1MC4a LINE L1 -1942 5866 5624 787 292 45 12 chr13 79895743 79895986 -39848912 + MIR SINE MIR 12 262 0 313 283 21 105 chr13 79896791 79896982 -39847916 + L1MEc LINE L1 1039 1213 -5508 830 211 6 18 chr13 79896984 79897150 -39847748 + FRAM SINE Alu 1 164 -2 188 125 50 0 chr13 79897152 79897192 -39847706 + GA-rich Low_complexity Low_complexity 4 45 0 236 254 0 0 chr13 79897306 79897373 -39847525 + L1MEc LINE L1 1858 1924 -4616 726 158 16 0 chr13 79897373 79897500 -39847398 + L1MB2 LINE L1 6036 6164 -7 266 245 0 4 chr13 79897567 79897671 -39847227 + L1M2 LINE L1 2496 2616 -4233 1290 265 206 16 chr13 79897882 79898901 -39845997 + L1MEc LINE L1 2297 3462 -3078 366 342 87 66 chr13 79901794 79902186 -39842712 + L2 LINE L2 2855 3254 -18 512 151 0 0 chr13 79902718 79902791 -39842107 - AluS SINE Alu -240 73 1 2392 91 7 0 chr13 79904099 79904408 -39840490 - AluSx SINE Alu -1 311 1 186 43 0 0 chr13 79904539 79904562 -39840336 + (A)n Simple_repeat Simple_repeat 1 23 0 1656 191 56 102 chr13 79904570 79905110 -39839788 - LTR40a LTR ERVL -4 515 1 1939 158 7 0 chr13 79905972 79906270 -39838628 + AluSx SINE Alu 1 300 -12 358 235 83 88 chr13 79906498 79906702 -39838196 - L3b LINE CR1 -69 1514 1312 218 220 51 51 chr13 79906881 79906940 -39837958 - L2 LINE L2 -7 3265 3207 318 280 0 159 chr13 79907083 79907215 -39837683 - L2 LINE L2 -6 3266 3156 371 254 35 0 chr13 79907311 79907425 -39837473 + L1MC4 LINE L1 7925 8042 0 193 343 89 48 chr13 79908309 79908455 -39836443 - L2 LINE L2 0 3272 3121 429 293 159 24 chr13 79908490 79908698 -39836200 + MIR SINE MIR 14 249 -13 399 298 16 8 chr13 79908833 79908954 -39835944 - LTR33 LTR ERVL -52 469 348 497 255 198 92 chr13 79909251 79909584 -39835314 - L3 LINE CR1 -505 1072 683 655 223 15 0 chr13 79909584 79909714 -39835184 - FLAM_A SINE Alu -1 132 1 497 255 198 92 chr13 79909714 79909804 -39835094 - L3 LINE CR1 -894 683 604 390 313 149 15 chr13 79909890 79910091 -39834807 - L2 LINE L2 -165 3148 2921 36 40 0 0 chr13 79910091 79910141 -39834757 + AT_rich Low_complexity Low_complexity 1 50 0 537 239 116 40 chr13 79910147 79910398 -39834500 - L1MC5 LINE L1 -54 7907 7638 1834 120 60 18 chr13 79910439 79910723 -39834175 + AluSc SINE Alu 1 296 -13 528 100 0 25 chr13 79911662 79911742 -39833156 - MADE1 DNA Mariner -2 78 1 1228 291 88 18 chr13 79912470 79912914 -39831984 - LTR33 LTR ERVL -46 475 1 2572 54 0 10 chr13 79913088 79913402 -39831496 + AluY SINE Alu 1 311 0 333 161 0 0 chr13 79914920 79914976 -39829922 - L2 LINE L2 0 3272 3217 478 310 35 12 chr13 79915104 79915275 -39829623 - MIR SINE MIR -68 194 20 787 215 24 15 chr13 79915412 79915617 -39829281 - MER39 LTR ERV1 -23 684 478 261 241 164 26 chr13 79915615 79915731 -39829167 - MER39B LTR ERV1 -308 345 214 * 329 186 41 62 chr13 79915705 79915802 -39829096 - LTR48B LTR ERV1 -544 100 6 1573 181 114 10 chr13 79916982 79917385 -39827513 - LTR56 LTR ERV1 0 445 1 3335 178 56 9 chr13 79917992 79918633 -39826265 - LTR51 LTR ERV1 0 671 1 2648 142 19 12 chr13 79918668 79919154 -39825744 - L1MB7 LINE L1 -16 6168 5680 362 349 6 25 chr13 79919294 79919553 -39825345 + GA-rich Low_complexity Low_complexity 1 253 0 936 157 153 31 chr13 79919602 79919825 -39825073 - L1MB7 LINE L1 -537 5647 5398 2920 191 55 59 chr13 79919881 79920659 -39824239 - Charlie1 DNA MER1_type -191 2570 1796 10358 194 17 15 chr13 79920664 79923961 -39820937 - L1PA16 LINE L1 -11 6155 2857 502 230 20 40 chr13 79923961 79924113 -39820785 - Charlie1 DNA MER1_type -944 1817 1669 1955 148 0 0 chr13 79924113 79924397 -39820501 + AluJb SINE Alu 1 284 -28 261 146 0 0 chr13 79924399 79924447 -39820451 + (TG)n Simple_repeat Simple_repeat 1 48 0 249 83 0 0 chr13 79924899 79924935 -39819963 + (CA)n Simple_repeat Simple_repeat 2 37 0 523 160 0 76 chr13 79924935 79925054 -39819844 - Charlie1 DNA MER1_type -1088 1673 1564 2046 130 7 0 chr13 79925058 79925357 -39819541 - AluSc SINE Alu -6 303 3 51 17 0 0 chr13 79925889 79925947 -39818951 + AT_rich Low_complexity Low_complexity 1 58 0 29 85 0 0 chr13 79926056 79926115 -39818783 + AT_rich Low_complexity Low_complexity 1 59 0 26 30 0 0 chr13 79926198 79926231 -39818667 + AT_rich Low_complexity Low_complexity 1 33 0 28 22 0 22 chr13 79926413 79926437 -39818461 + AT_rich Low_complexity Low_complexity 1 25 -20 824 285 40 11 chr13 79926437 79926714 -39818184 - AluJo SINE Alu -17 285 1 28 22 0 22 chr13 79926714 79926735 -39818163 + AT_rich Low_complexity Low_complexity 25 45 0 478 329 8 32 chr13 79926736 79926985 -39817913 - L1MC4a LINE L1 -1942 5866 5624 787 292 45 12 chr13 79926996 79927239 -39817659 + MIR SINE MIR 12 262 0 313 283 21 105 chr13 79928044 79928235 -39816663 + L1MEc LINE L1 1039 1213 -5508 830 211 6 18 chr13 79928237 79928403 -39816495 + FRAM SINE Alu 1 164 -2 188 125 50 0 chr13 79928405 79928445 -39816453 + GA-rich Low_complexity Low_complexity 4 45 0 236 254 0 0 chr13 79928559 79928626 -39816272 + L1MEc LINE L1 1858 1924 -4616 726 158 16 0 chr13 79928626 79928753 -39816145 + L1MB2 LINE L1 6036 6164 -7 266 245 0 4 chr13 79928820 79928924 -39815974 + L1M2 LINE L1 2496 2616 -4233 1290 265 206 16 chr13 79929135 79930154 -39814744 + L1MEc LINE L1 2297 3462 -3078 1550 171 14 11 chr13 79931960 79932241 -39812657 - MSTB2 LTR MaLR -158 299 18 1086 155 40 5 chr13 79932397 79932597 -39812301 - ORSL DNA AcHobo 0 275 69 291 344 27 44 chr13 79932687 79932870 -39812028 - L2 LINE L2 -181 3091 2912 205 250 138 12 chr13 79933040 79933120 -39811778 + L3 LINE CR1 939 1028 -549 296 182 0 18 chr13 79933136 79933191 -39811707 - LTR67 LTR ERVL -14 543 490 726 128 0 0 chr13 79934221 79934338 -39810560 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 317 257 67 38 chr13 79934519 79934624 -39810274 + MIR SINE MIR 29 136 -126 3749 144 34 14 chr13 79934633 79935273 -39809625 - MER39B LTR ERV1 0 653 1 211 229 98 16 chr13 79935353 79935414 -39809484 + MIR3 SINE MIR 105 170 -38 462 254 52 67 chr13 79935527 79935681 -39809217 + L2 LINE L2 2872 3024 -248 2032 155 89 0 chr13 79935681 79936075 -39808823 + MSTB1 LTR MaLR 1 429 -3 462 254 52 67 chr13 79936075 79936113 -39808785 + L2 LINE L2 3024 3061 -211 422 373 6 0 chr13 79936366 79936535 -39808363 - MIR SINE MIR -2 260 91 185 356 14 27 chr13 79936728 79936801 -39808097 - MIR SINE MIR -188 74 3 423 279 99 41 chr13 79937048 79937220 -39807678 - MIR SINE MIR -53 209 28 269 284 187 30 chr13 79937493 79937627 -39807271 + L2 LINE L2 3118 3272 0 2320 33 0 7 chr13 79937651 79937922 -39806976 + AluY SINE Alu 40 308 -3 281 406 57 0 chr13 79938108 79938214 -39806684 - MER91A DNA MER1_type -81 115 4 605 148 0 10 chr13 79938599 79938700 -39806198 + AluSg/x SINE Alu 201 300 -10 281 207 12 0 chr13 79938774 79938856 -39806042 + (CA)n Simple_repeat Simple_repeat 2 84 0 23 0 0 0 chr13 79939170 79939193 -39805705 + AT_rich Low_complexity Low_complexity 1 23 0 391 302 99 35 chr13 79939822 79940031 -39804867 + MIR SINE MIR 11 231 -31 189 0 0 0 chr13 79940064 79940085 -39804813 + (T)n Simple_repeat Simple_repeat 1 21 0 406 301 89 42 chr13 79940323 79940536 -39804362 - MIR SINE MIR -37 225 3 1968 255 100 28 chr13 79941390 79942042 -39802856 - MER21B LTR ERV1 -150 713 15 765 205 32 16 chr13 79942117 79942302 -39802596 - MER3 DNA MER1_type -20 189 2 3111 247 64 7 chr13 79942312 79943271 -39801627 + L1M4 LINE L1 2189 3201 -2945 444 111 0 0 chr13 79943481 79943553 -39801345 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 1659 154 43 21 chr13 79943560 79943840 -39801058 - AluJo SINE Alu -23 289 4 1576 115 29 55 chr13 79944113 79944425 -39800473 + L1MA9 LINE L1 6007 6310 -2 24 0 0 70 chr13 79944640 79944683 -39800215 + AT_rich Low_complexity Low_complexity 1 40 0 297 340 74 24 chr13 79944899 79945079 -39799819 + MIR SINE MIR 15 216 -46 294 140 0 0 chr13 79945176 79945226 -39799672 - MADE1 DNA Mariner -1 79 30 475 266 77 22 chr13 79945250 79945436 -39799462 + MIR SINE MIR 52 248 -14 2441 87 13 0 chr13 79947905 79948214 -39796684 - AluSq SINE Alu 0 313 1 245 191 0 0 chr13 79948483 79948530 -39796368 + L2 LINE L2 3267 3313 0 290 319 59 42 chr13 79948581 79948700 -39796198 - L2 LINE L2 0 3313 3193 223 289 327 0 chr13 79949592 79949696 -39795202 - L2 LINE L2 -10 3262 3125 1140 154 0 77 chr13 79950157 79950378 -39794520 - AluJo SINE Alu -14 298 95 403 211 0 0 chr13 79950380 79950451 -39794447 + AluJ/FRAM SINE Alu 225 295 -17 348 246 0 0 chr13 79950703 79950764 -39794134 - AluJ/FRAM SINE Alu -23 279 219 230 270 0 16 chr13 79950727 79950790 -39794108 + FLAM SINE Alu 63 124 -9 * 183 289 24 72 chr13 79950900 79950983 -39793915 - MIR3 SINE MIR -20 188 110 2145 125 3 0 chr13 79952104 79952400 -39792498 - AluSq SINE Alu -16 297 1 216 0 0 0 chr13 79953055 79953079 -39791819 + (TG)n Simple_repeat Simple_repeat 2 25 0 208 77 51 0 chr13 79953090 79953129 -39791769 + (TA)n Simple_repeat Simple_repeat 2 42 0 1596 157 0 83 chr13 79953163 79953501 -39791397 - AluJo SINE Alu -2 310 1 235 280 85 85 chr13 79954381 79954499 -39790399 + L3 LINE CR1 1436 1553 -24 265 276 86 20 chr13 79955230 79955482 -39789416 + MER46C DNA MER2_type 2 306 -32 205 346 148 19 chr13 79955965 79956127 -39788771 - L3b LINE CR1 -36 1547 1365 564 292 31 22 chr13 79957204 79957430 -39787468 - MLT1J1 LTR MaLR -218 228 1 201 237 0 0 chr13 79957850 79957909 -39786989 + GA-rich Low_complexity Low_complexity 2 60 0 498 206 21 0 chr13 79958898 79958995 -39785903 - MER50 LTR ERV1 -26 708 610 2026 106 0 4 chr13 79958995 79959268 -39785630 - AluSg SINE Alu -8 302 31 6372 118 173 71 chr13 79959271 79960801 -39784097 - pTR5 LTR ERV1 0 2438 753 251 49 122 0 chr13 79960804 79960845 -39784053 - AluSg SINE Alu -256 46 1 * 3507 157 7 11 chr13 79960845 79961461 -39783437 - MER50 LTR ERV1 -121 613 1 327 25 0 0 chr13 79962931 79962971 -39781927 + (CA)n Simple_repeat Simple_repeat 2 41 0 1728 154 34 27 chr13 79964091 79964389 -39780509 + AluJo SINE Alu 1 300 -12 270 229 37 28 chr13 79965622 79965731 -39779167 - LTR67 LTR ERVL -11 546 437 500 235 174 56 chr13 79966379 79966592 -39778306 + MIR SINE MIR 25 262 0 6283 94 3 22 chr13 79966696 79966974 -39777924 - L1PA15 LINE L1 -7 6158 5876 2206 84 0 14 chr13 79966974 79967283 -39777615 - AluY SINE Alu 0 311 13 6283 94 3 22 chr13 79967283 79969057 -39775841 - L1PA15 LINE L1 -289 5876 4119 210 313 0 30 chr13 79969058 79969125 -39775773 + L2 LINE L2 2995 3059 -213 331 336 21 57 chr13 79969153 79969293 -39775605 - L2 LINE L2 -1 3271 3137 3343 84 37 24 chr13 79969733 79970271 -39774627 - L1MA2 LINE L1 0 6304 5760 881 151 10 36 chr13 79970274 79970466 -39774432 - L1M1 LINE L1 -7363 202 16 407 213 185 0 chr13 79971474 79971582 -39773316 - MIR3 SINE MIR -21 187 60 26 0 0 0 chr13 79971703 79971729 -39773169 + AT_rich Low_complexity Low_complexity 1 26 0 1128 188 22 4 chr13 79972176 79972405 -39772493 - MLT1A1 LTR MaLR 0 365 133 959 230 58 42 chr13 79972510 79972819 -39772079 + MER93a LTR ERV1 72 385 -17 696 190 15 0 chr13 79972861 79972998 -39771900 - MLT1A1 LTR MaLR -223 142 4 1426 53 24 14 chr13 79973128 79973336 -39771562 - L1MA3 LINE L1 0 6305 6096 3994 162 1 9 chr13 79973394 79974176 -39770722 - L1 LINE L1 -904 5242 4467 220 367 42 17 chr13 79974477 79974597 -39770301 - MIR SINE MIR -67 141 19 1159 274 70 52 chr13 79974613 79975153 -39769745 + LTR67 LTR ERVL 3 552 -5 189 0 0 0 chr13 79975311 79975332 -39769566 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 279 308 56 56 chr13 79976181 79976486 -39768412 + ERVL LTR ERVL 1369 1673 -4091 369 239 79 21 chr13 79976640 79976806 -39768092 + ERVL LTR ERVL 1790 2002 -3686 538 295 78 10 chr13 79976849 79977042 -39767856 - L2 LINE L2 -1 3312 3107 2503 68 3 0 chr13 79977265 79977573 -39767325 + AluY SINE Alu 1 309 -2 1274 193 80 11 chr13 79978403 79978905 -39765993 - MLT1E1 LTR MaLR 0 654 60 265 261 22 22 chr13 79979068 79979160 -39765738 - L1MC5 LINE L1 -32 7929 7838 258 295 86 9 chr13 79979166 79979271 -39765627 + L2 LINE L2 2664 2776 -538 233 308 46 31 chr13 79979313 79979443 -39765455 - L1ME LINE L1 -407 5714 5583 592 86 9 38 chr13 79980378 79980483 -39764415 - L1MB3 LINE L1 -2 6181 6080 21 0 0 0 chr13 79980702 79980723 -39764175 + AT_rich Low_complexity Low_complexity 1 21 0 2303 121 0 0 chr13 79981680 79981993 -39762905 + AluSq SINE Alu 1 313 0 264 77 0 0 chr13 79982232 79982271 -39762627 + (TC)n Simple_repeat Simple_repeat 1 39 0 31 44 0 0 chr13 79982643 79982688 -39762210 + AT_rich Low_complexity Low_complexity 1 45 0 448 239 102 88 chr13 79982947 79983173 -39761725 + MIR SINE MIR 34 262 0 269 301 42 89 chr13 79983672 79983846 -39761052 + MIR3 SINE MIR 1 169 -59 342 234 240 39 chr13 79984656 79984810 -39760088 + MIR SINE MIR 23 207 -55 423 0 0 0 chr13 79984872 79984919 -39759979 + (TG)n Simple_repeat Simple_repeat 2 48 0 844 254 99 71 chr13 79985563 79985780 -39759118 - MLT1J LTR MaLR 0 511 302 2216 91 7 0 chr13 79985780 79986066 -39758832 - AluSc SINE Alu -21 288 1 844 254 99 71 chr13 79986066 79986343 -39758555 - MLT1J LTR MaLR -209 302 3 289 294 184 0 chr13 79987572 79987681 -39757217 + MIR SINE MIR 9 137 -125 29 0 0 0 chr13 79987681 79987710 -39757188 + AT_rich Low_complexity Low_complexity 1 29 0 2173 113 0 0 chr13 79987710 79987992 -39756906 - AluSg SINE Alu -28 282 1 399 206 84 46 chr13 79987992 79988123 -39756775 + MIR SINE MIR 122 257 -5 246 313 25 0 chr13 79988606 79988686 -39756212 + MER5A DNA MER1_type 7 88 -101 191 35 0 35 chr13 79989158 79989187 -39755711 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 319 242 58 50 chr13 79989449 79989569 -39755329 - L2 LINE L2 -3 3310 3190 2362 81 16 13 chr13 79989905 79990212 -39754686 + AluSc SINE Alu 2 309 0 2440 74 0 3 chr13 79990837 79991149 -39753749 + AluY SINE Alu 1 311 0 665 150 12 75 chr13 79991304 79991477 -39753421 - L1PA15 LINE L1 -5 6160 5999 24 0 0 0 chr13 79992124 79992148 -39752750 + AT_rich Low_complexity Low_complexity 1 24 0 2653 14 0 0 chr13 79992292 79992582 -39752316 - AluYa5 SINE Alu -5 306 17 255 108 0 0 chr13 79993903 79993940 -39750958 + U2 snRNA snRNA 1 37 -151 180 339 71 0 chr13 79993940 79993996 -39750902 + MIR SINE MIR 24 83 -179 212 452 0 0 chr13 79994002 79994106 -39750792 + L2 LINE L2 3186 3289 -24 644 248 82 86 chr13 79994868 79995332 -39749566 + MLT1J LTR MaLR 6 467 -44 1709 175 3 21 chr13 79995546 79995864 -39749034 - AluJb SINE Alu 0 313 1 365 228 29 106 chr13 79995867 79996140 -39748758 - L1MD3 LINE L1 0 8042 7804 860 77 0 0 chr13 79996315 79996419 -39748479 + AluSx SINE Alu 1 104 -208 2073 122 56 0 chr13 79996419 79996739 -39748159 + LTR18A LTR ERVL 3 340 -17 1534 111 9 13 chr13 79996741 79996967 -39747931 + AluSx SINE Alu 87 311 -1 2010 245 51 115 chr13 79997384 79998532 -39746366 - L1MC4 LINE L1 -225 7817 6598 2261 191 28 76 chr13 79998532 79999114 -39745784 - MLT2B3 LTR ERVL 0 554 1 2010 245 51 115 chr13 79999114 79999439 -39745459 - L1MC4 LINE L1 -1444 6598 6446 1180 101 167 5 chr13 79999439 79999637 -39745261 + MER30 DNA MER1_type 1 230 0 2010 245 51 115 chr13 79999637 79999721 -39745177 - L1MC4 LINE L1 -1596 6446 6358 2558 150 30 6 chr13 80000014 80000482 -39744416 + L1MC2 LINE L1 5857 6335 -9 290 312 39 86 chr13 80002020 80002254 -39742644 + L2 LINE L2 2440 2662 -652 312 321 64 0 chr13 80002288 80002397 -39742501 - L1ME3 LINE L1 -5 6157 6042 356 204 25 173 chr13 80002505 80002667 -39742231 - MLT1J LTR MaLR -308 154 1 1402 267 67 26 chr13 80002675 80003397 -39741501 - L1M4 LINE L1 -1599 4547 3797 262 290 10 53 chr13 80003402 80003609 -39741289 - L1M4 LINE L1 -2608 3538 3341 901 191 53 0 chr13 80003609 80003798 -39741100 - MER115 DNA AcHobo 0 4031 495 244 258 98 54 chr13 80003857 80004152 -39740746 - L1MEd LINE L1 -5246 873 566 1618 190 0 26 chr13 80004154 80004465 -39740433 - AluJo SINE Alu -9 303 1 661 106 18 9 chr13 80004480 80004593 -39740305 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 2500 59 3 3 chr13 80004899 80005203 -39739695 - AluY SINE Alu -7 304 1 2868 106 9 7 chr13 80007322 80007757 -39737141 - L1PA11 LINE L1 -35 6139 5704 21 0 0 0 chr13 80007996 80008017 -39736881 + AT_rich Low_complexity Low_complexity 1 21 0 446 304 71 46 chr13 80009050 80009271 -39735627 + MIR SINE MIR 16 252 -10 194 337 31 41 chr13 80009284 80009382 -39735516 + MIR SINE MIR 50 146 -62 346 171 98 65 chr13 80009537 80009660 -39735238 + MER58B DNA MER1_type 199 325 -16 210 118 0 0 chr13 80010277 80010311 -39734587 + (TC)n Simple_repeat Simple_repeat 1 34 0 201 333 145 8 chr13 80010981 80011098 -39733800 - L2 LINE L2 -4 3268 3136 180 0 0 0 chr13 80011112 80011132 -39733766 + (TG)n Simple_repeat Simple_repeat 2 21 0 272 261 26 17 chr13 80011140 80011255 -39733643 + (TA)n Simple_repeat Simple_repeat 1 116 0 2544 179 52 6 chr13 80011659 80012140 -39732758 + MLT1D LTR MaLR 1 503 -2 843 216 91 14 chr13 80012682 80012890 -39732008 - MIR SINE MIR -37 225 2 332 383 34 37 chr13 80012997 80013266 -39731632 - L2 LINE L2 -174 3098 2831 505 181 9 35 chr13 80013337 80013453 -39731445 + MER3 DNA MER1_type 93 205 -4 2182 97 3 7 chr13 80015007 80015307 -39729591 + AluSq SINE Alu 1 299 -14 227 387 73 38 chr13 80015987 80016274 -39728624 + L2 LINE L2 2976 3272 0 831 266 103 18 chr13 80016307 80016638 -39728260 + L1MC4a LINE L1 5548 5906 -1902 3178 133 35 77 chr13 80016835 80016981 -39727917 + L1MC1 LINE L1 5681 5832 -501 763 183 8 0 chr13 80016981 80017112 -39727786 - FLAM_C SINE Alu -1 132 1 3178 133 35 77 chr13 80017112 80017629 -39727269 + L1MC1 LINE L1 5832 6316 -17 302 323 45 13 chr13 80017727 80017882 -39727016 - MER117 DNA MER1_type -35 162 3 1550 182 32 35 chr13 80019058 80019371 -39725527 - AluJb SINE Alu 0 312 1 805 137 15 8 chr13 80019442 80019573 -39725325 - AluSx SINE Alu -14 296 165 1239 139 0 0 chr13 80019735 80019907 -39724991 - AluSx SINE Alu -140 172 1 22 35 0 0 chr13 80020291 80020320 -39724578 + AT_rich Low_complexity Low_complexity 1 29 0 284 354 97 0 chr13 80022011 80022155 -39722743 - MIR3 SINE MIR -13 195 38 2103 127 3 0 chr13 80022906 80023206 -39721692 - AluSx SINE Alu -11 301 1 201 208 20 40 chr13 80024020 80024121 -39720777 + (TATAA)n Simple_repeat Simple_repeat 2 100 0 308 282 30 122 chr13 80024238 80024332 -39720566 + L1ME LINE L1 4550 4651 -1495 2308 75 10 0 chr13 80024332 80024624 -39720274 - AluY SINE Alu -16 295 1 308 282 30 122 chr13 80024624 80024791 -39720107 + L1ME LINE L1 4651 4787 -1359 25 51 0 0 chr13 80024957 80024996 -39719902 + AT_rich Low_complexity Low_complexity 1 39 0 305 360 10 0 chr13 80025008 80025108 -39719790 - L2 LINE L2 -5 3308 3208 274 287 132 35 chr13 80025356 80025734 -39719164 - L2 LINE L2 -260 3012 2577 344 297 36 12 chr13 80026151 80026316 -39718582 + L1ME LINE L1 5521 5689 -432 208 210 113 73 chr13 80026600 80026724 -39718174 + MIR SINE MIR 134 262 0 1906 72 4 0 chr13 80026954 80027213 -39717685 + AluSg SINE Alu 44 303 0 227 391 35 23 chr13 80027460 80027718 -39717180 - L3 LINE CR1 -1192 385 125 2733 13 0 0 chr13 80027873 80028173 -39716725 - AluYa5 SINE Alu -11 300 1 1147 107 2 5 chr13 80028385 80028576 -39716322 - L1PA16 LINE L1 -155 5999 5814 306 299 72 10 chr13 80028640 80028737 -39716161 + MIR SINE MIR 20 122 -86 390 311 131 10 chr13 80031112 80031318 -39713580 + MIR SINE MIR 20 250 -12 463 291 0 21 chr13 80031500 80031641 -39713257 - MLT1J LTR MaLR -57 454 317 21 0 0 0 chr13 80032145 80032166 -39712732 + AT_rich Low_complexity Low_complexity 1 21 0 314 273 206 30 chr13 80032945 80033110 -39711788 - MIR SINE MIR -56 206 13 2154 118 17 12 chr13 80033357 80033703 -39711195 + THE1B LTR MaLR 1 348 -16 2787 104 23 0 chr13 80033708 80034141 -39710757 - L1M1 LINE L1 -504 5799 5357 25 0 0 0 chr13 80034141 80034166 -39710732 + AT_rich Low_complexity Low_complexity 1 25 0 2566 149 24 27 chr13 80034812 80034894 -39710004 - L1MB7 LINE L1 -16 6168 6087 1769 180 0 0 chr13 80034894 80035178 -39709720 + AluSx SINE Alu 1 284 -28 311 0 26 0 chr13 80035178 80035217 -39709681 + (TA)n Simple_repeat Simple_repeat 2 41 0 2566 149 24 27 chr13 80035217 80035644 -39709254 - L1MB7 LINE L1 -95 6089 5660 268 313 122 0 chr13 80035894 80036025 -39708873 + MIR SINE MIR 46 192 -70 1617 168 56 76 chr13 80036212 80036462 -39708436 - MLT1B LTR MaLR -5 385 131 219 36 0 0 chr13 80036462 80036490 -39708408 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7752 19 2 24 chr13 80036490 80037819 -39707079 - L1PA3 LINE L1 -6 6149 4834 1617 168 56 76 chr13 80037819 80037960 -39706938 - MLT1B LTR MaLR -257 133 1 368 298 149 0 chr13 80038533 80038694 -39706204 - MIR SINE MIR -10 252 68 606 243 139 18 chr13 80038819 80039156 -39705742 - LTR16A1 LTR ERVL -2 455 78 206 291 35 47 chr13 80039436 80039522 -39705376 - MIR SINE MIR -51 211 127 390 197 13 0 chr13 80039663 80039739 -39705159 - MER81 DNA DNA 0 114 38 330 198 128 107 chr13 80039750 80039992 -39704906 - ORSL DNA AcHobo -28 247 1 303 283 171 44 chr13 80040175 80040380 -39704518 + L2 LINE L2 3042 3272 0 289 299 28 0 chr13 80040390 80040502 -39704396 + MIR3 SINE MIR 60 176 -32 33 25 0 0 chr13 80040894 80040934 -39703964 + AT_rich Low_complexity Low_complexity 1 40 0 526 281 38 0 chr13 80042236 80042396 -39702502 - MIR SINE MIR -45 217 52 1017 197 48 0 chr13 80042422 80042630 -39702268 + MER20 DNA MER1_type 2 219 0 2260 97 0 13 chr13 80043322 80043631 -39701267 + AluSx SINE Alu 1 305 -7 447 317 36 32 chr13 80043855 80044041 -39700857 + MIR SINE MIR 4 187 -65 405 0 0 0 chr13 80044301 80044346 -39700552 + (CACAA)n Simple_repeat Simple_repeat 4 48 0 1571 182 3 33 chr13 80044944 80045246 -39699652 + AluJb SINE Alu 1 293 -19 385 336 40 94 chr13 80046372 80046723 -39698175 - L2 LINE L2 -7 3265 2934 250 286 126 50 chr13 80046889 80047088 -39697810 - L2 LINE L2 -26 3287 3074 184 321 156 9 chr13 80047233 80047342 -39697556 + L2 LINE L2 2932 3056 -216 305 256 18 65 chr13 80047890 80048058 -39696840 + CT-rich Low_complexity Low_complexity 3 162 0 213 98 39 20 chr13 80048071 80048122 -39696776 + CT-rich Low_complexity Low_complexity 4 55 0 594 272 22 56 chr13 80050003 80050183 -39694715 - MER5B DNA MER1_type -2 176 3 321 328 26 0 chr13 80051047 80051163 -39693735 + MIR SINE MIR 70 188 -74 800 252 144 30 chr13 80051436 80051805 -39693093 - MLT1J2 LTR MaLR -39 411 1 1989 154 0 0 chr13 80051970 80052268 -39692630 + AluSx SINE Alu 1 298 -14 260 202 21 53 chr13 80053242 80053336 -39691562 + MER58B DNA MER1_type 247 337 -4 399 334 180 9 chr13 80055144 80055461 -39689437 - L3 LINE CR1 -9 1568 1198 228 135 0 0 chr13 80055640 80055677 -39689221 + (T)n Simple_repeat Simple_repeat 1 37 0 1399 118 0 0 chr13 80055682 80055868 -39689030 - AluSg1 SINE Alu -63 246 61 757 47 47 2 chr13 80056031 80056266 -39688632 + AluY SINE Alu 3 298 -13 2425 75 3 3 chr13 80056277 80056582 -39688316 + AluSp SINE Alu 1 305 -8 189 0 0 0 chr13 80056583 80056604 -39688294 + (TA)n Simple_repeat Simple_repeat 1 21 0 2187 173 88 17 chr13 80057338 80057759 -39687139 - MLT1C LTR MaLR -16 451 1 372 229 12 12 chr13 80058014 80058097 -39686801 - L2 LINE L2 -4 3309 3227 601 82 21 10 chr13 80058511 80058608 -39686290 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 21 36 0 0 chr13 80058934 80058962 -39685936 + AT_rich Low_complexity Low_complexity 1 28 0 448 294 158 63 chr13 80060824 80061541 -39683357 + L2 LINE L2 1605 2389 -925 3422 131 2 0 chr13 80061558 80062077 -39682821 - L1P LINE L1 -1538 4608 4089 1905 174 5 18 chr13 80062084 80062464 -39682434 - THE1C LTR MaLR 0 375 1 887 277 16 10 chr13 80063033 80063343 -39681555 - LTR55 LTR ERV -2 546 235 193 292 92 25 chr13 80063494 80063614 -39681284 - L2 LINE L2 -818 2496 2369 180 216 0 0 chr13 80064358 80064409 -39680489 + CT-rich Low_complexity Low_complexity 1 51 0 202 317 49 44 chr13 80064592 80064775 -39680123 - L2 LINE L2 -189 3083 2900 22 35 0 0 chr13 80066560 80066589 -39678309 + AT_rich Low_complexity Low_complexity 1 29 0 228 89 22 44 chr13 80067008 80067053 -39677845 - L1MC/D LINE L1 -1850 5935 5892 1045 195 28 80 chr13 80067054 80067114 -39677784 - L1MC/D LINE L1 -808 5338 5276 2228 86 0 4 chr13 80067114 80067394 -39677504 - AluSx SINE Alu -23 289 11 1045 195 28 80 chr13 80067394 80067761 -39677137 - L1MC/D LINE L1 -870 5276 4988 412 289 7 56 chr13 80068081 80068223 -39676675 - MIR3 SINE MIR -48 160 26 3415 248 74 132 chr13 80070435 80072799 -39672099 + L2 LINE L2 20 2245 -1069 656 254 203 34 chr13 80072797 80073092 -39671806 + L2 LINE L2 2964 3308 -5 * 213 103 17 103 chr13 80074552 80074610 -39670288 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr13 80076348 80076378 -39668520 + AT_rich Low_complexity Low_complexity 1 30 0 307 296 0 0 chr13 80077411 80077492 -39667406 + MER103 DNA DNA 38 118 -48 1732 156 22 35 chr13 80077586 80077901 -39666997 - AluJo SINE Alu -1 311 1 512 80 0 11 chr13 80078296 80078384 -39666514 + (TG)n Simple_repeat Simple_repeat 1 87 0 2249 115 0 0 chr13 80081087 80081382 -39663516 + AluSq SINE Alu 1 295 -18 574 296 75 10 chr13 80081437 80081636 -39663262 - MIR SINE MIR -1 261 50 315 0 0 0 chr13 80081725 80081760 -39663138 + (TG)n Simple_repeat Simple_repeat 1 35 0 1408 129 5 0 chr13 80083010 80083212 -39661686 - AluJo SINE Alu -24 288 86 205 250 71 0 chr13 80083449 80083505 -39661393 + MIR3 SINE MIR 101 160 -48 333 268 92 49 chr13 80083505 80083669 -39661229 - MER102a DNA MER1_type 0 330 160 1891 157 3 0 chr13 80083732 80084018 -39660880 - AluJo SINE Alu -25 287 1 456 312 11 43 chr13 80084878 80085064 -39659834 + MIR3 SINE MIR 11 190 -18 1756 120 0 0 chr13 80085223 80085465 -39659433 - AluSq SINE Alu -71 242 1 22 35 0 0 chr13 80087419 80087448 -39657450 + AT_rich Low_complexity Low_complexity 1 29 0 270 218 18 41 chr13 80089796 80089966 -39654932 + (TATG)n Simple_repeat Simple_repeat 1 166 0 226 136 17 51 chr13 80089973 80090032 -39654866 + (TG)n Simple_repeat Simple_repeat 2 58 0 303 248 297 0 chr13 80090498 80090599 -39654299 + MIR SINE MIR 22 152 -110 24 0 0 0 chr13 80090734 80090758 -39654140 + AT_rich Low_complexity Low_complexity 1 24 0 1893 97 71 4 chr13 80090761 80091030 -39653868 + AluY SINE Alu 1 287 -24 390 315 6 28 chr13 80091073 80091254 -39653644 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 244 381 0 0 chr13 80091264 80091369 -39653529 + (TG)n Simple_repeat Simple_repeat 2 106 0 1486 152 38 70 chr13 80092072 80092387 -39652511 - AluJo SINE Alu -7 305 1 247 314 147 0 chr13 80093236 80093338 -39651560 + MIR SINE MIR 30 146 -62 1990 140 0 0 chr13 80093354 80093640 -39651258 + AluSx SINE Alu 1 286 -26 341 326 69 6 chr13 80094435 80094610 -39650288 + MIR3 SINE MIR 2 187 -21 856 257 34 0 chr13 80094645 80094851 -39650047 + MIR SINE MIR 15 227 -35 36 0 0 0 chr13 80094970 80095006 -39649892 + AT_rich Low_complexity Low_complexity 1 36 0 2306 87 7 0 chr13 80095213 80095511 -39649387 + AluY SINE Alu 7 306 -5 1001 196 36 18 chr13 80096145 80096364 -39648534 - MER58A DNA MER1_type 0 224 2 457 315 7 14 chr13 80096736 80096882 -39648016 + MIR SINE MIR 70 214 -48 345 200 13 0 chr13 80097006 80097081 -39647817 + MER116 DNA Mariner 5 80 0 327 49 0 0 chr13 80097481 80097522 -39647376 + (T)n Simple_repeat Simple_repeat 1 41 0 308 317 5 106 chr13 80098601 80098809 -39646089 + MIR SINE MIR 20 206 -56 403 316 8 0 chr13 80099740 80099857 -39645041 - MIR3 SINE MIR -49 159 42 361 233 39 58 chr13 80100204 80100307 -39644591 - MIR3 SINE MIR -3 205 105 24 0 0 0 chr13 80100386 80100410 -39644488 + AT_rich Low_complexity Low_complexity 1 24 0 593 242 73 36 chr13 80100875 80101041 -39643857 - MER112 DNA MER1_type 0 260 83 378 0 0 0 chr13 80101041 80101083 -39643815 + (TG)n Simple_repeat Simple_repeat 1 42 0 593 242 73 36 chr13 80101083 80101135 -39643763 - MER112 DNA MER1_type -177 83 34 23 0 0 0 chr13 80101308 80101331 -39643567 + AT_rich Low_complexity Low_complexity 1 23 0 454 175 12 0 chr13 80103275 80103355 -39641543 - AluJ/FLAM SINE Alu -220 92 12 210 208 0 0 chr13 80103366 80103414 -39641484 + CT-rich Low_complexity Low_complexity 2 49 0 332 285 115 8 chr13 80104190 80104320 -39640578 - MIR SINE MIR -72 190 47 22 0 0 0 chr13 80104947 80104969 -39639929 + AT_rich Low_complexity Low_complexity 1 22 0 514 315 75 66 chr13 80105842 80106576 -39638322 + L2 LINE L2 2448 3256 -16 1666 179 0 4 chr13 80107489 80107769 -39637129 + AluJo SINE Alu 22 300 -12 637 112 10 0 chr13 80108260 80108358 -39636540 + HY3 scRNA scRNA 1 99 -2 198 0 0 0 chr13 80108358 80108380 -39636518 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1338 124 99 153 chr13 80108778 80108989 -39635909 - MLT1B LTR MaLR 0 390 210 2180 109 0 3 chr13 80108989 80109292 -39635606 - AluSg SINE Alu -8 302 1 1338 124 99 153 chr13 80109292 80109492 -39635406 - MLT1B LTR MaLR -180 210 1 281 148 37 0 chr13 80109810 80109864 -39635034 - L2 LINE L2 -4 3309 3254 2105 153 37 3 chr13 80110905 80111257 -39633641 - THE1B LTR MaLR 0 364 1 310 310 97 0 chr13 80111258 80111342 -39633556 - MIR SINE MIR -44 218 144 1695 180 57 41 chr13 80111342 80111709 -39633189 + THE1C LTR MaLR 1 373 -2 310 310 97 0 chr13 80111709 80111769 -39633129 - MIR SINE MIR -118 144 60 227 321 24 8 chr13 80112082 80112262 -39632636 + MIR SINE MIR 40 254 -8 1292 185 25 0 chr13 80112263 80112544 -39632354 + L1MA4 LINE L1 6013 6300 0 281 151 57 9 chr13 80112973 80113079 -39631819 + (TA)n Simple_repeat Simple_repeat 2 112 0 4081 111 17 26 chr13 80114557 80115215 -39629683 - MER39B LTR ERV1 -1 652 1 1302 165 15 38 chr13 80115375 80115636 -39629262 - L1M4 LINE L1 -401 5777 5523 262 336 107 0 chr13 80115765 80115896 -39629002 + L3 LINE CR1 1316 1460 -117 212 167 0 0 chr13 80115938 80115974 -39628924 - MER5A DNA MER1_type -3 186 151 205 229 0 0 chr13 80115971 80116006 -39628892 - MER5A DNA MER1_type -154 35 1 * 497 300 50 12 chr13 80116045 80116205 -39628693 + MER5B DNA MER1_type 1 166 -12 1254 227 58 3 chr13 80116310 80116618 -39628280 + L1MD3 LINE L1 7666 7990 -5 1647 184 33 38 chr13 80116788 80117179 -39627719 - MLT1B LTR MaLR -1 389 1 2839 9 0 0 chr13 80118124 80118439 -39626459 + AluYb8 SINE Alu 1 315 -3 917 232 5 0 chr13 80120784 80120969 -39623929 + MER5A DNA MER1_type 1 186 -3 329 293 87 20 chr13 80121126 80121276 -39623622 + MIR SINE MIR 9 168 -94 331 247 47 0 chr13 80122235 80122320 -39622578 - L1MC4 LINE L1 -1339 6703 6615 354 294 0 34 chr13 80122325 80122444 -39622454 + L1MC4 LINE L1 6614 6728 -1314 291 308 84 19 chr13 80123051 80123158 -39621740 + L2 LINE L2 3150 3263 -9 478 308 50 36 chr13 80124552 80124773 -39620125 + MIR SINE MIR 34 257 -5 21 71 0 0 chr13 80124975 80125017 -39619881 + AT_rich Low_complexity Low_complexity 1 42 0 518 253 7 34 chr13 80126369 80126504 -39618394 + MIR3 SINE MIR 25 155 -53 541 253 54 18 chr13 80126504 80126670 -39618228 + MER5B DNA MER1_type 1 172 -6 344 324 9 9 chr13 80129761 80129866 -39615032 + MIR3 SINE MIR 98 202 -6 22 35 0 0 chr13 80130754 80130783 -39614115 + AT_rich Low_complexity Low_complexity 1 29 0 234 336 56 14 chr13 80131774 80131917 -39612981 + MIR3 SINE MIR 60 208 0 2149 112 0 3 chr13 80132091 80132386 -39612512 + AluSp SINE Alu 1 294 -19 420 226 212 77 chr13 80132660 80132934 -39611964 - L2 LINE L2 -51 3262 2952 7806 181 25 51 chr13 80133915 80134640 -39610258 + L1MC3 LINE L1 4838 4033 -2113 1934 191 57 24 chr13 80134640 80135020 -39609878 + MSTB1 LTR MaLR 1 398 -34 2379 87 0 0 chr13 80135020 80135330 -39609568 - AluY SINE Alu -1 310 1 1934 191 57 24 chr13 80135330 80135367 -39609531 + MSTB1 LTR MaLR 398 432 0 7806 181 25 51 chr13 80135367 80136705 -39608193 + L1MC3 LINE L1 4032 5403 -743 2089 99 0 75 chr13 80137052 80137374 -39607524 + AluY SINE Alu 1 298 -13 23 33 0 0 chr13 80137883 80137913 -39606985 + AT_rich Low_complexity Low_complexity 1 30 0 2303 132 40 38 chr13 80138300 80138771 -39606127 - L1MB3 LINE L1 -9 6174 5703 4724 68 27 0 chr13 80239101 80239732 -39505166 + L1PA6 LINE L1 5506 6153 -1 201 74 0 0 chr13 80239865 80239892 -39505006 + (T)n Simple_repeat Simple_repeat 1 27 0 6837 57 11 34 chr13 80239893 80241462 -39503436 - SVA Other Other -799 1385 10 765 152 41 0 chr13 80241463 80241608 -39503290 + L1MB5 LINE L1 6024 6174 0 856 152 0 8 chr13 80241620 80241809 -39503089 + FLAM_C SINE Alu 1 188 0 259 309 0 24 chr13 80241884 80241968 -39502930 - MIR SINE MIR -78 130 49 546 99 0 11 chr13 80242111 80242202 -39502696 - MER41A LTR ERV1 0 554 465 35346 53 1 4 chr13 80242302 80245116 -39499782 - L1P LINE L1 -1488 4658 1858 4763 40 9 0 chr13 80245116 80245695 -39499203 - L1PA4 LINE L1 -1 6154 5571 35346 53 1 4 chr13 80245695 80247549 -39497349 - L1P LINE L1 -4288 1858 1 2613 244 23 8 chr13 80247549 80248333 -39496565 + L1 LINE L1 2875 3670 -2476 5691 211 30 14 chr13 80248436 80250179 -39494719 + L1PB4 LINE L1 2565 4337 -2511 243 0 0 0 chr13 80250180 80250207 -39494691 + (T)n Simple_repeat Simple_repeat 1 27 0 7828 17 1 0 chr13 80250621 80252044 -39492854 - L1PA3 LINE L1 0 6155 4732 14057 35 0 0 chr13 80252044 80253827 -39491071 + L1P LINE L1 1240 3022 -3124 8224 170 15 17 chr13 80253822 80256362 -39488536 + L1PB4 LINE L1 4324 6857 -1 * 336 275 25 0 chr13 80256489 80256609 -39488289 + HAL1 LINE L1 1518 1640 -867 22 0 0 0 chr13 80256643 80256665 -39488233 + AT_rich Low_complexity Low_complexity 1 22 0 440 282 184 35 chr13 80257030 80257501 -39487397 + L1MEc LINE L1 2180 2683 -3532 225 208 52 0 chr13 80257511 80257588 -39487310 + (TA)n Simple_repeat Simple_repeat 2 82 0 232 312 18 24 chr13 80257598 80257768 -39487130 + L1MEc LINE L1 2732 2900 -3315 2377 37 7 7 chr13 80257773 80258067 -39486831 - AluY SINE Alu -15 296 3 611 314 61 8 chr13 80258252 80258513 -39486385 + MLT1I LTR MaLR 1 275 -134 1033 223 76 0 chr13 80260492 80260716 -39484182 + MIR SINE MIR 6 246 -16 658 122 14 27 chr13 80260981 80261128 -39483770 + (TTCC)n Simple_repeat Simple_repeat 4 148 0 704 211 0 0 chr13 80261137 80261260 -39483638 - FLAM_A SINE Alu -9 124 2 281 329 138 9 chr13 80261285 80261516 -39483382 + L2 LINE L2 3041 3301 -12 192 77 0 0 chr13 80261559 80261585 -39483313 + (TTA)n Simple_repeat Simple_repeat 3 28 0 256 247 12 74 chr13 80261950 80262031 -39482867 - L2 LINE L2 0 3272 3197 304 198 154 0 chr13 80262333 80262424 -39482474 + MIR SINE MIR 82 186 -76 338 214 10 61 chr13 80264288 80264386 -39480512 + L2 LINE L2 3221 3313 0 387 344 99 79 chr13 80264803 80265829 -39479069 + L1M2 LINE L1 298 1344 -5505 183 42 0 0 chr13 80266639 80266663 -39478235 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr13 80268208 80268229 -39476669 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr13 80269133 80269159 -39475739 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 3887 14 0 0 chr13 80269168 80269611 -39475287 - L1PA2 LINE L1 0 6155 5713 258 364 64 0 chr13 80269971 80270081 -39474817 - MIR3 SINE MIR -45 163 47 360 206 82 10 chr13 80270142 80270239 -39474659 - MER112 DNA MER1_type -28 232 129 585 181 35 6 chr13 80271291 80271793 -39473105 + (TA)n Simple_repeat Simple_repeat 1 516 0 434 236 22 22 chr13 80271815 80271993 -39472905 + (TA)n Simple_repeat Simple_repeat 1 178 0 434 236 22 22 chr13 80272015 80272273 -39472625 + (TA)n Simple_repeat Simple_repeat 1 258 0 441 204 11 68 chr13 80272295 80272486 -39472412 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr13 80273045 80273066 -39471832 + AT_rich Low_complexity Low_complexity 1 21 0 2227 289 140 43 chr13 80273392 80274746 -39470152 - HAL1 LINE L1 -6 2501 889 195 100 0 0 chr13 80274746 80274776 -39470122 + (TG)n Simple_repeat Simple_repeat 1 30 0 2227 289 140 43 chr13 80274776 80275423 -39469475 - HAL1 LINE L1 -1618 889 306 29589 94 22 15 chr13 80275875 80277167 -39467731 + L1PA7 LINE L1 734 2014 -4140 2001 128 0 3 chr13 80277167 80277473 -39467425 - AluSx SINE Alu 0 305 1 29589 94 22 15 chr13 80277473 80277802 -39467096 + L1PA7 LINE L1 2014 2339 -3815 183 42 0 0 chr13 80277802 80277826 -39467072 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 29589 94 22 15 chr13 80277826 80281583 -39463315 + L1PA7 LINE L1 2339 6151 -3 1685 187 7 10 chr13 80281733 80282032 -39462866 + AluJo SINE Alu 3 300 -12 4976 237 75 30 chr13 80282076 80282305 -39462593 - L1ME1 LINE L1 -5 6230 6013 1799 128 0 0 chr13 80282305 80282547 -39462351 - AluSg SINE Alu -48 262 21 4976 237 75 30 chr13 80282547 80284883 -39460015 - L1ME1 LINE L1 -222 6013 3545 329 203 0 0 chr13 80284900 80284969 -39459929 - L1ME1 LINE L1 -4008 2388 2320 364 250 31 39 chr13 80284994 80285122 -39459776 - MLT1L LTR MaLR -339 276 150 550 263 105 12 chr13 80285125 80285296 -39459602 + MER5A DNA MER1_type 2 188 -1 215 154 26 0 chr13 80285415 80285454 -39459444 - MER5A DNA MER1_type -92 97 58 1234 204 104 3 chr13 80285571 80285879 -39459019 + MER58B DNA MER1_type 3 341 0 348 301 77 26 chr13 80287742 80287898 -39457000 + MER5A DNA MER1_type 21 184 -5 224 287 125 73 chr13 80288045 80288181 -39456717 - MIR SINE MIR -118 144 2 1807 131 65 44 chr13 80288444 80288811 -39456087 + THE1C LTR MaLR 1 375 0 1034 247 61 27 chr13 80288980 80289308 -39455590 - MER58B DNA MER1_type 0 341 3 28 61 0 0 chr13 80289752 80289801 -39455097 + AT_rich Low_complexity Low_complexity 1 49 0 1313 244 144 76 chr13 80289884 80290155 -39454743 - HAL1 LINE L1 -140 2367 2116 2057 129 3 3 chr13 80290155 80290449 -39454449 - AluSx SINE Alu -18 294 1 1313 244 144 76 chr13 80290449 80291334 -39453564 - HAL1 LINE L1 -391 2116 1132 444 220 0 22 chr13 80291375 80291466 -39453432 - L2 LINE L2 -22 3291 3203 368 321 123 32 chr13 80291466 80291743 -39453155 - HAL1 LINE L1 -1933 574 273 847 70 0 0 chr13 80292141 80292255 -39452643 - L1PA5 LINE L1 0 6154 6041 308 343 38 9 chr13 80292347 80292452 -39452446 + L2 LINE L2 3179 3286 -27 1620 180 39 3 chr13 80293835 80294118 -39450780 - AluJb SINE Alu -19 293 1 315 297 23 31 chr13 80294951 80295079 -39449819 + L2 LINE L2 3187 3313 0 21 0 0 0 chr13 80295505 80295526 -39449372 + AT_rich Low_complexity Low_complexity 1 21 0 233 383 61 35 chr13 80297036 80297297 -39447601 - L2 LINE L2 -19 3253 2986 189 74 0 0 chr13 80297303 80297330 -39447568 + (TG)n Simple_repeat Simple_repeat 2 28 0 320 309 167 24 chr13 80297459 80297669 -39447229 - L2 LINE L2 -363 2951 2712 346 275 72 48 chr13 80298361 80298528 -39446370 + HAL1 LINE L1 1136 1306 -1201 287 297 88 20 chr13 80298678 80298826 -39446072 + HAL1 LINE L1 1499 1656 -851 266 242 55 11 chr13 80299097 80299188 -39445710 + HAL1b LINE L1 746 840 -508 2109 121 7 0 chr13 80302141 80302430 -39442468 + AluSx SINE Alu 1 291 -21 207 0 0 0 chr13 80302433 80302456 -39442442 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 295 327 29 10 chr13 80302593 80302697 -39442201 - MIR SINE MIR -122 140 35 641 215 149 76 chr13 80302873 80303189 -39441709 + MER58B DNA MER1_type 3 341 0 276 318 178 45 chr13 80303679 80303942 -39440956 + L2 LINE L2 1458 1685 -1629 224 30 30 0 chr13 80303942 80303975 -39440923 + (CAA)n Simple_repeat Simple_repeat 2 35 0 276 318 178 45 chr13 80303975 80304840 -39440058 + L2 LINE L2 1685 2736 -578 317 177 16 0 chr13 80305610 80305672 -39439226 - L1MCa LINE L1 -4358 2068 2006 412 100 0 0 chr13 80305912 80305972 -39438926 - L1PA10 LINE L1 -108 6060 6001 * 963 42 8 0 chr13 80305971 80306091 -39438807 + L1PA10 LINE L1 5846 5966 -202 233 385 44 0 chr13 80306766 80306857 -39438041 - L2 LINE L2 -7 3306 3212 23 0 0 0 chr13 80309046 80309069 -39435829 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr13 80309489 80309509 -39435389 + (TG)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr13 80309632 80309661 -39435237 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 80311242 80311270 -39433628 + AT_rich Low_complexity Low_complexity 1 28 0 303 161 62 3 chr13 80311388 80311460 -39433438 - L1MB1 LINE L1 0 6168 6101 2542 234 51 34 chr13 80312051 80312822 -39432076 + L1MD2 LINE L1 5555 6338 -21 1825 142 25 54 chr13 80314321 80314637 -39430261 - AluSx SINE Alu -5 307 1 22 0 0 0 chr13 80315383 80315405 -39429493 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr13 80315800 80315826 -39429072 + (T)n Simple_repeat Simple_repeat 1 26 0 185 217 200 0 chr13 80316202 80316262 -39428636 + MIR3 SINE MIR 106 177 -31 21 57 0 0 chr13 80316517 80316552 -39428346 + AT_rich Low_complexity Low_complexity 1 35 0 459 307 186 31 chr13 80317298 80317686 -39427212 + L1MC4 LINE L1 7578 8025 -17 339 222 61 20 chr13 80318625 80318724 -39426174 + MER106B DNA MER1_type 53 155 -904 30 27 0 0 chr13 80318724 80318761 -39426137 + AT_rich Low_complexity Low_complexity 1 37 0 374 360 0 0 chr13 80318839 80318950 -39425948 + L2 LINE L2 3150 3260 -12 1798 163 73 21 chr13 80319879 80320409 -39424489 - MLT2A1 LTR ERVL 0 554 1 39 50 0 0 chr13 80320765 80320825 -39424073 + AT_rich Low_complexity Low_complexity 1 60 0 634 280 84 31 chr13 80321718 80321943 -39422955 - MIR SINE MIR -23 239 3 421 325 43 100 chr13 80321948 80322299 -39422599 + L2 LINE L2 2939 3269 -3 * 471 340 97 46 chr13 80322294 80322521 -39422377 + L3 LINE CR1 604 857 -720 1524 140 0 18 chr13 80322521 80322743 -39422155 + AluJb SINE Alu 84 301 -11 471 340 97 46 chr13 80322743 80322865 -39422033 + L3 LINE CR1 857 971 -606 1009 191 99 8 chr13 80322918 80323170 -39421728 + L1MC4a LINE L1 6820 7094 -714 189 353 129 0 chr13 80323415 80323531 -39421367 + MIR SINE MIR 16 146 -62 543 228 87 55 chr13 80323668 80323980 -39420918 - L1M4 LINE L1 -1545 4601 4280 1253 240 156 2 chr13 80323985 80324435 -39420463 + L1ME3 LINE L1 5635 6153 -9 813 171 47 24 chr13 80324467 80324637 -39420261 - L1MC2 LINE L1 0 6344 6171 7086 153 11 10 chr13 80324841 80327222 -39417676 - L1PB2 LINE L1 0 6151 3772 304 280 201 11 chr13 80328677 80328866 -39416032 + L2 LINE L2 2810 3034 -279 337 219 42 42 chr13 80328880 80328976 -39415922 + L2 LINE L2 3210 3305 -8 264 301 11 0 chr13 80329253 80329346 -39415552 - L2 LINE L2 -1471 1843 1750 322 257 21 62 chr13 80329427 80329571 -39415327 - L1ME4a LINE L1 -1 6120 5983 1505 180 68 24 chr13 80329807 80330101 -39414797 - AluJo SINE Alu -5 307 1 257 184 0 0 chr13 80332337 80332386 -39412512 - MIR SINE MIR -107 155 107 2736 137 12 9 chr13 80332389 80332811 -39412087 - MSTB LTR MaLR -2 424 2 8497 160 50 16 chr13 80332812 80333914 -39410984 - MSTB-int LTR MaLR 0 1651 588 216 0 0 0 chr13 80333914 80333938 -39410960 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1888 127 7 25 chr13 80333940 80334224 -39410674 - AluSx SINE Alu -33 279 1 8497 160 50 16 chr13 80334224 80334714 -39410184 - MSTB-int LTR MaLR -1063 588 1 1894 171 78 8 chr13 80334714 80335110 -39409788 - MSTB LTR MaLR 0 414 1 210 266 87 96 chr13 80335344 80335537 -39409361 - L2 LINE L2 -78 3235 3043 2099 203 74 40 chr13 80335537 80336129 -39408769 + LTR9 LTR ERV1 1 612 0 210 266 87 96 chr13 80336129 80336164 -39408734 - L2 LINE L2 -270 3043 3009 533 237 40 20 chr13 80336189 80336341 -39408557 - MER105 DNA DNA -6 198 44 403 252 78 0 chr13 80336341 80336444 -39408454 + MER5A DNA MER1_type 3 113 -76 1361 265 56 56 chr13 80336465 80337072 -39407826 - L2 LINE L2 -338 2976 2370 270 227 80 0 chr13 80337072 80337147 -39407751 - L2 LINE L2 -1111 2203 2123 986 236 157 60 chr13 80337294 80337773 -39407125 - MLT1F1 LTR MaLR 0 567 18 1485 259 170 29 chr13 80337804 80339632 -39405266 - L1ME LINE L1 -567 5668 3585 305 256 124 54 chr13 80339691 80340285 -39404613 - L1MEc LINE L1 -3594 2621 2041 479 316 78 77 chr13 80340588 80341035 -39403863 - L2 LINE L2 -1 3312 2861 845 249 6 0 chr13 80341035 80341212 -39403686 - MER45A DNA AcHobo 0 178 1 479 316 78 77 chr13 80341212 80341323 -39403575 - L2 LINE L2 -452 2861 2752 743 262 33 9 chr13 80341333 80341543 -39403355 - MIR SINE MIR 0 262 48 239 278 120 37 chr13 80341547 80341655 -39403243 - L2 LINE L2 -583 2731 2615 1656 200 0 16 chr13 80341957 80342272 -39402626 - AluJo SINE Alu -2 310 1 1524 93 62 16 chr13 80342280 80342537 -39402361 - L1MA5A LINE L1 -3 6294 6026 577 281 107 0 chr13 80343500 80343724 -39401174 - LTR16C LTR ERVL -4 487 240 585 242 180 0 chr13 80343869 80344047 -39400851 + MER58C DNA MER1_type 5 214 -1 364 308 70 51 chr13 80344062 80344435 -39400463 - MLT1I LTR MaLR -29 380 1 25 31 0 0 chr13 80344872 80344904 -39399994 + AT_rich Low_complexity Low_complexity 1 32 0 1315 256 86 55 chr13 80345279 80345617 -39399281 - MLT1E3 LTR MaLR 0 624 298 2359 41 41 0 chr13 80345617 80345909 -39398989 - AluY SINE Alu -7 304 1 1315 256 86 55 chr13 80345909 80345974 -39398924 - MLT1E3 LTR MaLR -326 298 237 2218 85 7 10 chr13 80345974 80346310 -39398588 + AluSc SINE Alu 1 335 0 1315 256 86 55 chr13 80346310 80346508 -39398390 - MLT1E3 LTR MaLR -387 237 1 225 136 11 136 chr13 80346709 80346797 -39398101 + MER112 DNA MER1_type 139 215 -45 21 0 0 0 chr13 80346981 80347002 -39397896 + AT_rich Low_complexity Low_complexity 1 21 0 2279 92 3 3 chr13 80347967 80348261 -39396637 - AluSq SINE Alu -19 294 1 218 331 184 14 chr13 80348373 80348669 -39396229 + L2 LINE L2 2914 3271 -1 240 111 0 0 chr13 80349198 80349234 -39395664 + (T)n Simple_repeat Simple_repeat 1 36 0 5116 153 20 8 chr13 80349945 80350969 -39393929 + L1PA16 LINE L1 5129 6164 -2 25 51 0 0 chr13 80350970 80351009 -39393889 + AT_rich Low_complexity Low_complexity 1 39 0 342 347 76 42 chr13 80351134 80351476 -39393422 + L1MC4 LINE L1 5716 6065 -1743 1160 160 24 38 chr13 80352849 80353136 -39391762 + L1MA4 LINE L1 6014 6296 -4 968 202 101 0 chr13 80353279 80353477 -39391421 + MER58A DNA MER1_type 7 224 0 792 255 159 57 chr13 80355040 80355128 -39389770 + L2 LINE L2 2633 2711 -602 1468 163 18 75 chr13 80355128 80355459 -39389439 - AluJo SINE Alu 0 312 1 792 255 159 57 chr13 80355459 80355976 -39388922 + L2 LINE L2 2711 3311 -2 878 292 69 44 chr13 80356475 80357088 -39387810 - MLT2F LTR ERVL -2 661 3 207 315 84 49 chr13 80357165 80357308 -39387590 + MIR3 SINE MIR 33 180 -28 289 154 62 15 chr13 80357464 80357529 -39387369 + L1MC5 LINE L1 7711 7778 -183 17139 184 9 50 chr13 80357533 80359683 -39385215 + L1PA16 LINE L1 1 2236 -4613 2118 117 21 0 chr13 80359683 80359973 -39384925 + AluSx SINE Alu 1 296 -16 17139 184 9 50 chr13 80359973 80360719 -39384179 + L1PA16 LINE L1 2236 3010 -3839 252 59 0 0 chr13 80360719 80360753 -39384145 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 17139 184 9 50 chr13 80360753 80363369 -39381529 + L1PA16 LINE L1 3010 5339 -1510 331 132 29 0 chr13 80363396 80363464 -39381434 + (TA)n Simple_repeat Simple_repeat 1 70 0 242 29 29 0 chr13 80363463 80363498 -39381400 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 5638 119 14 7 chr13 80363498 80364992 -39379906 + L1PA16 LINE L1 5369 6869 0 210 308 0 11 chr13 80365040 80365131 -39379767 + CT-rich Low_complexity Low_complexity 2 91 0 529 250 94 6 chr13 80365286 80365466 -39379432 - L1ME2 LINE L1 -136 6028 5833 281 281 198 0 chr13 80365464 80365560 -39379338 - L1ME2 LINE L1 -558 5606 5492 * 1203 249 20 63 chr13 80365562 80365911 -39378987 + MLT1G LTR MaLR 192 525 -65 496 285 223 40 chr13 80365925 80366406 -39378492 - HAL1 LINE L1 -1938 569 1 22 0 0 0 chr13 80368792 80368814 -39376084 + AT_rich Low_complexity Low_complexity 1 22 0 306 358 67 6 chr13 80369010 80369189 -39375709 + L2 LINE L2 2706 2895 -419 2101 288 139 26 chr13 80369189 80369448 -39375450 - L2 LINE L2 0 3313 3085 1797 152 7 11 chr13 80369448 80369731 -39375167 + AluSx SINE Alu 1 282 -30 2101 288 139 26 chr13 80369731 80370770 -39374128 - L2 LINE L2 -228 3085 1855 453 56 84 0 chr13 80370825 80370896 -39374002 + L1PA13 LINE L1 6082 6158 -5 274 392 82 21 chr13 80371083 80371277 -39373621 + MIR SINE MIR 1 206 -56 342 115 0 39 chr13 80371550 80371628 -39373270 + (TC)n Simple_repeat Simple_repeat 2 76 0 5714 148 25 5 chr13 80371635 80372281 -39372617 - L1PB2 LINE L1 -3 6148 5517 195 69 0 0 chr13 80372281 80372310 -39372588 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5714 148 25 5 chr13 80372310 80373173 -39371725 - L1PB2 LINE L1 -634 5517 4608 206 171 0 24 chr13 80373201 80373242 -39371656 + T-rich Low_complexity Low_complexity 5 44 0 524 307 157 62 chr13 80376448 80376881 -39368017 + L2 LINE L2 2840 3313 0 198 328 147 17 chr13 80376879 80376995 -39367903 - MIR SINE MIR -61 201 71 * 405 0 0 0 chr13 80377808 80377853 -39367045 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 0 0 0 chr13 80377852 80377879 -39367019 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 669 315 51 0 chr13 80378900 80379097 -39365801 + MIR SINE MIR 5 211 -51 322 286 92 15 chr13 80380279 80380485 -39364413 + MLT1J2 LTR MaLR 13 234 -216 2007 92 0 61 chr13 80380510 80380805 -39364093 + AluSg SINE Alu 1 277 -33 207 0 0 0 chr13 80380808 80380831 -39364067 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 233 194 0 65 chr13 80380909 80380971 -39363927 + MLT1I LTR MaLR 344 401 -8 257 279 23 47 chr13 80381184 80381270 -39363628 - L3 LINE CR1 -2 1575 1492 323 94 0 38 chr13 80381566 80381619 -39363279 + Tigger1 DNA MER2_type 671 721 -1697 8296 111 10 39 chr13 80381619 80382048 -39362850 + Tigger1 DNA MER2_type 1093 1533 -885 216 97 0 0 chr13 80382048 80382079 -39362819 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 8296 111 10 39 chr13 80382079 80383014 -39361884 + Tigger1 DNA MER2_type 1533 2418 0 548 153 17 51 chr13 80383069 80383187 -39361711 + MLT1D LTR MaLR 387 500 -5 1366 207 0 0 chr13 80383957 80384208 -39360690 - L1PB4 LINE L1 -2 6154 5904 337 345 52 85 chr13 80385384 80385691 -39359207 - L2 LINE L2 -8 3264 2968 561 146 61 4 chr13 80385698 80385832 -39359066 - L1PA12 LINE L1 -85 6069 5934 331 252 69 23 chr13 80386225 80386356 -39358542 - MIR SINE MIR -11 251 115 537 227 22 65 chr13 80386372 80386557 -39358341 + MER5B DNA MER1_type 2 178 0 21 36 0 0 chr13 80386696 80386724 -39358174 + AT_rich Low_complexity Low_complexity 1 28 0 582 283 158 20 chr13 80387817 80388198 -39356700 + LTR33 LTR ERVL 42 476 -47 2089 120 0 17 chr13 80391627 80391926 -39352972 + AluSq SINE Alu 1 294 -19 518 294 51 54 chr13 80392211 80392507 -39352391 + L1M4 LINE L1 3927 4221 -1925 378 110 7 227 chr13 80392576 80392730 -39352168 + L1MC5 LINE L1 6861 6980 -981 1845 238 40 36 chr13 80392753 80393359 -39351539 + L1MC5 LINE L1 6968 7575 -386 508 316 60 9 chr13 80393500 80393715 -39351183 - LTR67 LTR ERVL -329 228 3 32 43 0 0 chr13 80393991 80394037 -39350861 + AT_rich Low_complexity Low_complexity 1 46 0 244 290 105 70 chr13 80394120 80394196 -39350702 - HAL1 LINE L1 -135 2372 2300 1220 219 49 29 chr13 80394196 80394502 -39350396 - AluJo SINE Alu 0 312 1 244 290 105 70 chr13 80394502 80394939 -39349959 - HAL1 LINE L1 -207 2300 1841 436 287 16 8 chr13 80395053 80395182 -39349716 - L2 LINE L2 -1 3312 3183 2329 93 0 13 chr13 80396820 80397130 -39347768 - AluY SINE Alu -5 306 1 638 171 0 8 chr13 80397528 80397657 -39347241 + CT-rich Low_complexity Low_complexity 3 130 0 232 391 0 9 chr13 80397723 80397838 -39347060 - MIR SINE MIR -118 144 31 262 275 5 130 chr13 80398223 80398302 -39346596 + MLT1J LTR MaLR 318 359 -152 2250 114 0 3 chr13 80398302 80398609 -39346289 - AluSx SINE Alu -6 306 1 262 275 5 130 chr13 80398609 80398729 -39346169 + MLT1J LTR MaLR 359 492 -19 251 312 203 0 chr13 80398968 80399106 -39345792 + L3 LINE CR1 1409 1574 -3 184 229 129 29 chr13 80401840 80401910 -39342988 + L2 LINE L2 3196 3272 0 712 285 44 56 chr13 80403589 80403999 -39340899 - MLT1J1 LTR MaLR -2 444 64 2057 120 3 3 chr13 80404863 80405147 -39339751 - AluSx SINE Alu -20 292 9 436 333 98 4 chr13 80405449 80405683 -39339215 - MIR SINE MIR 0 262 7 199 214 0 0 chr13 80406553 80406595 -39338303 - L2 LINE L2 0 3313 3272 2547 72 37 6 chr13 80407503 80407852 -39337046 + THE1B LTR MaLR 1 360 -4 4383 170 28 24 chr13 80407965 80408454 -39336444 - L1MB1 LINE L1 -52 6116 5609 4115 63 0 0 chr13 80408454 80408999 -39335899 + L1PA7 LINE L1 5629 6154 0 4383 170 28 24 chr13 80408999 80409423 -39335475 - L1MB1 LINE L1 -559 5609 5188 1652 158 67 25 chr13 80409651 80410011 -39334887 + THE1C LTR MaLR 1 375 0 410 295 23 23 chr13 80410018 80410147 -39334751 + MIR SINE MIR 98 226 -36 355 307 107 0 chr13 80410247 80410358 -39334540 + MIR SINE MIR 26 158 -104 2170 99 3 14 chr13 80410358 80410651 -39334247 + AluSc SINE Alu 1 290 -19 355 307 107 0 chr13 80410651 80410689 -39334209 + MIR SINE MIR 158 191 -71 253 325 0 25 chr13 80410974 80411054 -39333844 + MLT1K LTR MaLR 168 245 -343 239 270 58 75 chr13 80411399 80411573 -39333325 - L1ME LINE L1 -227 5894 5724 283 316 35 9 chr13 80411602 80411716 -39333182 - L1ME LINE L1 -521 5600 5484 24 0 0 0 chr13 80412048 80412072 -39332826 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 80412184 80412206 -39332692 + AT_rich Low_complexity Low_complexity 1 22 0 267 259 21 98 chr13 80412320 80412463 -39332435 - MIR SINE MIR 0 262 131 961 184 75 62 chr13 80412716 80413036 -39331862 - MER33 DNA MER1_type 0 324 1 1386 135 72 60 chr13 80413739 80414072 -39330826 + MER44D DNA MER2_type 1 607 -2 293 209 45 0 chr13 80414413 80414480 -39330418 - MER116 DNA Mariner 0 80 11 343 358 66 0 chr13 80414615 80414752 -39330146 + MIR SINE MIR 9 154 -108 388 253 0 0 chr13 80415087 80415178 -39329720 + MIR SINE MIR 164 254 -8 4859 214 66 42 chr13 80415178 80415292 -39329606 - L1MB7 LINE L1 0 6184 6074 2214 81 3 7 chr13 80415292 80415636 -39329262 + AluY SINE Alu 1 343 0 4859 214 66 42 chr13 80415636 80416588 -39328310 - L1MB7 LINE L1 -110 6074 5147 2210 112 0 0 chr13 80416588 80416882 -39328016 + AluSg SINE Alu 1 294 -16 4859 214 66 42 chr13 80416882 80417138 -39327760 - L1MB7 LINE L1 -1037 5147 4899 2309 108 3 3 chr13 80417138 80417444 -39327454 - AluY SINE Alu -5 306 1 4859 214 66 42 chr13 80417444 80418452 -39326446 - L1MB7 LINE L1 -1285 4899 3786 23 0 0 0 chr13 80418465 80418488 -39326410 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr13 80418777 80418799 -39326099 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1906 154 73 14 chr13 80419096 80419440 -39325458 + MSTA LTR MaLR 1 364 -64 1427 73 0 0 chr13 80419440 80419619 -39325279 - AluY SINE Alu -1 310 132 207 0 0 0 chr13 80419619 80419642 -39325256 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2329 56 0 14 chr13 80419642 80419930 -39324968 - AluY SINE Alu -27 284 1 441 134 0 0 chr13 80419931 80419998 -39324900 + MSTA LTR MaLR 362 428 0 207 0 0 0 chr13 80420845 80420868 -39324030 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2065 164 231 58 chr13 80421779 80422382 -39322516 - MER39 LTR ERV1 0 707 1 1503 184 9 51 chr13 80423073 80423389 -39321509 - AluJo SINE Alu -9 303 1 1071 87 7 0 chr13 80424285 80424435 -39320463 - L1PA13 LINE L1 -8 6155 6005 204 67 0 0 chr13 80424458 80424488 -39320410 + (T)n Simple_repeat Simple_repeat 1 30 0 231 304 13 13 chr13 80424965 80425044 -39319854 + ORSL DNA AcHobo 197 275 0 23 0 0 0 chr13 80425894 80425917 -39318981 + AT_rich Low_complexity Low_complexity 1 23 0 2657 140 9 14 chr13 80426733 80427168 -39317730 + MER57B LTR ERV1 1 433 -1 256 323 11 11 chr13 80427410 80427503 -39317395 + LTR67 LTR ERVL 460 552 -5 214 250 0 67 chr13 80427508 80427612 -39317286 + CT-rich Low_complexity Low_complexity 5 101 0 1096 226 83 17 chr13 80429497 80429624 -39315274 + LTR37A LTR ERV1 39 156 -270 2249 91 3 10 chr13 80429624 80429922 -39314976 - AluSq SINE Alu -17 296 1 1096 226 83 17 chr13 80429922 80430156 -39314742 + LTR37A LTR ERV1 156 424 -2 599 246 52 122 chr13 80431403 80431958 -39312940 - MER110 LTR ERV1 -11 480 3 207 0 0 0 chr13 80432325 80432348 -39312550 + (T)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 80432848 80432871 -39312027 + AT_rich Low_complexity Low_complexity 1 23 0 196 304 0 0 chr13 80433766 80433812 -39311086 - L2 LINE L2 -5 3308 3263 6797 211 85 28 chr13 80434281 80436075 -39308823 + L1M4b LINE L1 12 1906 -4949 1935 177 0 0 chr13 80436557 80436862 -39308036 + AluJb SINE Alu 1 305 -7 1397 151 28 58 chr13 80436873 80437036 -39307862 - L1MD1 LINE L1 -13 6229 6077 1452 214 3 13 chr13 80437036 80437339 -39307559 + AluJo SINE Alu 1 300 -12 1397 151 28 58 chr13 80437339 80437466 -39307432 - L1MD1 LINE L1 -165 6077 5948 779 269 17 0 chr13 80438109 80438284 -39306614 - MER5B DNA MER1_type 0 178 1 328 294 125 19 chr13 80438441 80438601 -39306297 - MER5B DNA MER1_type -1 177 1 667 265 6 0 chr13 80439772 80439938 -39304960 + MIR SINE MIR 94 260 -2 212 170 19 0 chr13 80439949 80440002 -39304896 + (CAT)n Simple_repeat Simple_repeat 2 55 0 25 51 0 0 chr13 80440112 80440151 -39304747 + AT_rich Low_complexity Low_complexity 1 39 0 201 74 0 0 chr13 80440729 80440756 -39304142 + (TG)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr13 80441988 80442009 -39302889 + AT_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr13 80442759 80442789 -39302109 + (TG)n Simple_repeat Simple_repeat 1 30 0 287 196 18 0 chr13 80443305 80443361 -39301537 + LTR37A LTR ERV1 128 184 -242 23 0 0 0 chr13 80444212 80444235 -39300663 + AT_rich Low_complexity Low_complexity 1 23 0 1777 188 131 20 chr13 80444418 80444683 -39300215 - MER74C LTR ERVL 0 460 133 2102 134 61 0 chr13 80444683 80445026 -39299872 + THE1B LTR MaLR 1 364 0 1777 188 131 20 chr13 80445026 80445164 -39299734 - MER74C LTR ERVL -327 133 12 2533 230 65 13 chr13 80445554 80446250 -39298648 - L1MB7 LINE L1 -2 6182 5451 235 318 146 18 chr13 80446737 80446847 -39298051 + MIR SINE MIR 30 153 -55 34 0 0 0 chr13 80447112 80447146 -39297752 + AT_rich Low_complexity Low_complexity 1 34 0 7744 20 0 0 chr13 80447146 80448373 -39296525 - L1PA3 LINE L1 -3 6152 4925 22 0 0 0 chr13 80448478 80448500 -39296398 + AT_rich Low_complexity Low_complexity 1 22 0 2326 98 3 0 chr13 80448568 80448875 -39296023 - AluY SINE Alu -3 308 1 2561 141 14 21 chr13 80449958 80450391 -39294507 - Tigger2a DNA MER2_type -1 433 4 244 317 10 29 chr13 80450842 80450946 -39293952 + MIR SINE MIR 20 121 -87 225 250 0 0 chr13 80450942 80450990 -39293908 + L2 LINE L2 3266 3313 0 * 875 290 21 31 chr13 80450988 80451274 -39293624 - L2 LINE L2 -4 3309 3027 1497 311 78 79 chr13 80453151 80454672 -39290226 - L2 LINE L2 -1 3312 1806 24 53 0 0 chr13 80455189 80455227 -39289671 + AT_rich Low_complexity Low_complexity 1 38 0 227 301 25 61 chr13 80455357 80455520 -39289378 + L2 LINE L2 1518 1674 -1640 469 351 119 16 chr13 80455651 80456036 -39288862 + L2 LINE L2 2382 2806 -508 396 0 0 0 chr13 80456057 80456101 -39288797 + (CA)n Simple_repeat Simple_repeat 2 45 0 412 284 37 49 chr13 80456110 80456272 -39288626 + L2 LINE L2 2909 3068 -204 27 49 0 0 chr13 80456962 80457003 -39287895 + AT_rich Low_complexity Low_complexity 1 41 0 244 125 18 36 chr13 80457134 80457190 -39287708 - HAL1 LINE L1 -159 2348 2294 35 0 0 0 chr13 80457270 80457305 -39287593 + AT_rich Low_complexity Low_complexity 1 35 0 207 232 61 30 chr13 80457323 80457487 -39287411 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 257 136 17 34 chr13 80457686 80457745 -39287153 - L1ME3A LINE L1 -214 5956 5899 939 205 34 5 chr13 80457748 80457953 -39286945 + MER20 DNA MER1_type 6 216 -3 415 238 95 27 chr13 80457953 80458184 -39286714 - L1ME3A LINE L1 -367 5811 5559 * 535 261 164 47 chr13 80458181 80458676 -39286222 - HAL1 LINE L1 -226 2281 1729 379 162 7 103 chr13 80458715 80458851 -39286047 - HAL1 LINE L1 -1374 1133 1011 499 284 143 80 chr13 80458999 80459665 -39285233 - HAL1 LINE L1 -1792 715 8 271 133 17 17 chr13 80459695 80459755 -39285143 + (TA)n Simple_repeat Simple_repeat 1 60 0 266 106 21 0 chr13 80459801 80459848 -39285050 + (CA)n Simple_repeat Simple_repeat 1 48 0 969 195 56 14 chr13 80460324 80460539 -39284359 - MER58A DNA MER1_type 0 224 1 500 317 38 16 chr13 80460854 80461037 -39283861 - MER5A DNA MER1_type -1 188 2 245 371 0 0 chr13 80461113 80461175 -39283723 - L2 LINE L2 -89 3183 3122 211 279 81 0 chr13 80461542 80461628 -39283270 + L2 LINE L2 3159 3251 -62 250 281 90 0 chr13 80461689 80461778 -39283120 - MIR SINE MIR -100 162 66 34 42 0 0 chr13 80463593 80463641 -39281257 + AT_rich Low_complexity Low_complexity 1 48 0 230 125 0 232 chr13 80464811 80464923 -39279975 - L1PA16 LINE L1 -2 6164 6079 24 0 0 0 chr13 80466354 80466378 -39278520 + AT_rich Low_complexity Low_complexity 1 24 0 214 231 96 0 chr13 80466443 80466495 -39278403 + MIR3 SINE MIR 135 191 -17 24 53 0 0 chr13 80468236 80468274 -39276624 + AT_rich Low_complexity Low_complexity 1 38 0 2338 143 22 68 chr13 80469658 80470205 -39274693 + LTR10A LTR ERV1 25 546 -63 835 293 107 25 chr13 80471476 80471841 -39273057 + L2 LINE L2 2897 3291 -22 213 181 14 28 chr13 80471921 80471993 -39272905 + (TA)n Simple_repeat Simple_repeat 1 71 0 288 289 130 47 chr13 80472534 80472787 -39272111 - Charlie8 DNA MER1_type -2143 274 1 963 278 208 25 chr13 80472821 80473589 -39271309 - L2 LINE L2 0 3313 2374 2018 219 82 6 chr13 80473722 80474198 -39270700 + MLT1F1 LTR MaLR 33 544 -23 227 292 108 0 chr13 80474244 80474309 -39270589 - MIR SINE MIR -184 78 7 1623 184 134 68 chr13 80474449 80474934 -39269964 + MLT2B1 LTR ERVL 1 517 -3 207 0 0 0 chr13 80475369 80475392 -39269506 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 80475774 80475795 -39269103 + AT_rich Low_complexity Low_complexity 1 21 0 297 299 0 26 chr13 80476996 80477073 -39267825 + L2 LINE L2 3197 3271 -1 243 190 86 17 chr13 80478052 80478110 -39266788 + MER91C DNA MER1_type 49 110 -30 461 247 44 25 chr13 80481462 80481620 -39263278 + L1MC/D LINE L1 5574 5734 -2074 473 365 0 17 chr13 80482822 80483000 -39261898 + MIR SINE MIR 22 196 -66 207 0 0 0 chr13 80484179 80484202 -39260696 + (CTG)n Simple_repeat Simple_repeat 1 23 0 193 297 31 0 chr13 80484309 80484373 -39260525 - MIR SINE MIR -62 146 81 228 320 238 0 chr13 80484513 80484694 -39260204 + MIR SINE MIR 23 246 -16 413 238 245 20 chr13 80484824 80484971 -39259927 - MER5A DNA MER1_type 0 189 10 983 186 6 11 chr13 80485022 80485199 -39259699 - MER5A DNA MER1_type -1 188 13 22 0 0 0 chr13 80486641 80486663 -39258235 + AT_rich Low_complexity Low_complexity 1 22 0 232 323 0 0 chr13 80487862 80487924 -39256974 - MIR SINE MIR -126 82 21 21 57 0 0 chr13 80488566 80488601 -39256297 + AT_rich Low_complexity Low_complexity 1 35 0 245 333 101 10 chr13 80488792 80488891 -39256007 - MIR SINE MIR -108 154 47 198 292 169 0 chr13 80489100 80489165 -39255733 + MIR3 SINE MIR 114 189 -19 340 206 54 0 chr13 80490076 80490168 -39254730 - L1ME2 LINE L1 0 6164 6068 1951 165 12 27 chr13 80491873 80492026 -39252872 - L1MB2 LINE L1 -3 6168 6014 2203 128 39 22 chr13 80492026 80492384 -39252514 + THE1B LTR MaLR 1 364 0 1951 165 12 27 chr13 80492384 80492631 -39252267 - L1MB2 LINE L1 -157 6014 5774 378 167 155 0 chr13 80492633 80492717 -39252181 - L1MB2 LINE L1 -474 5697 5601 426 224 10 0 chr13 80492721 80492819 -39252079 + L1M3 LINE L1 5677 5775 -396 * 4721 98 0 1 chr13 80492818 80493488 -39251410 + THE1B-int LTR MaLR 739 1407 -173 3960 81 10 26 chr13 80493504 80494109 -39250789 - THE1A-int LTR MaLR -985 595 1 2261 122 11 8 chr13 80494109 80494463 -39250435 - THE1A LTR MaLR 0 355 1 2564 106 20 0 chr13 80495134 80495491 -39249407 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr13 80497210 80497235 -39247663 + AT_rich Low_complexity Low_complexity 1 25 0 294 317 139 13 chr13 80497760 80497968 -39246930 - MIR SINE MIR 0 262 22 752 299 54 40 chr13 80498666 80499383 -39245515 + L1 LINE L1 4239 4965 -1181 322 228 20 0 chr13 80499565 80499678 -39245220 + L1 LINE L1 4945 5063 -1083 842 213 109 128 chr13 80499701 80500232 -39244666 + L2 LINE L2 2371 2891 -423 455 212 119 66 chr13 80500330 80500481 -39244417 + MER63A DNA MER1_type 52 210 0 222 62 0 0 chr13 80501375 80501407 -39243491 + (CA)n Simple_repeat Simple_repeat 1 32 0 2300 110 0 3 chr13 80501476 80501776 -39243122 + AluSq SINE Alu 2 300 -13 270 214 71 41 chr13 80502277 80502375 -39242523 + MLT1H LTR MaLR 63 163 -386 276 368 43 0 chr13 80502787 80502904 -39241994 + L2 LINE L2 2947 3068 -245 1020 209 121 24 chr13 80503061 80503392 -39241506 - L1MC4 LINE L1 -204 7838 7476 1715 147 48 4 chr13 80504256 80504529 -39240369 - AluSx SINE Alu -27 285 1 210 226 65 48 chr13 80504539 80504601 -39240297 - L2 LINE L2 -16 3297 3235 27 29 0 0 chr13 80505061 80505095 -39239803 + AT_rich Low_complexity Low_complexity 1 34 0 2057 131 0 45 chr13 80505097 80505411 -39239487 - AluSx SINE Alu -12 300 1 847 268 10 15 chr13 80505569 80505767 -39239131 - MIR SINE MIR -50 212 16 2118 119 7 0 chr13 80505855 80506150 -39238748 + AluSx SINE Alu 1 297 -15 187 100 100 0 chr13 80506424 80506464 -39238434 + L3b LINE CR1 1293 1336 -247 * 309 281 41 27 chr13 80506461 80506607 -39238291 - MIR3 SINE MIR -26 182 35 285 51 0 0 chr13 80507439 80507478 -39237420 + (A)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr13 80507736 80507758 -39237140 + AT_rich Low_complexity Low_complexity 1 22 0 366 268 114 48 chr13 80508106 80508334 -39236564 - MIR SINE MIR -12 250 8 3022 58 93 0 chr13 80508917 80509327 -39235571 - LTR7 LTR ERV1 -2 448 1 2199 109 48 13 chr13 80509327 80509704 -39235194 - HERVH LTR ERV1 0 7713 7324 1035 136 23 0 chr13 80509704 80509880 -39235018 - HERVH LTR ERV1 -1894 5819 5640 * 4003 127 3 5 chr13 80509878 80510508 -39234390 - HERVH LTR ERV1 -2597 5116 4488 5338 110 11 2 chr13 80510510 80511357 -39233541 - HERVH LTR ERV1 -3720 3993 3140 * 9253 136 29 29 chr13 80511336 80514672 -39230226 - HERVH LTR ERV1 -3437 3217 1 2753 75 120 0 chr13 80514674 80515074 -39229824 - LTR7 LTR ERV1 -2 448 1 289 357 45 0 chr13 80515084 80515238 -39229660 + MIR SINE MIR 52 212 -50 2157 123 0 0 chr13 80515410 80515734 -39229164 + AluSc SINE Alu 1 309 0 234 246 115 0 chr13 80515840 80515901 -39228997 - L2 LINE L2 -16 3297 3230 215 347 32 11 chr13 80516032 80516127 -39228771 - L2 LINE L2 -230 3042 2946 360 0 0 0 chr13 80516395 80516435 -39228463 + (TG)n Simple_repeat Simple_repeat 2 41 0 346 344 7 13 chr13 80516682 80516833 -39228065 - L2 LINE L2 -943 2371 2222 210 283 0 0 chr13 80517450 80517496 -39227402 + L2 LINE L2 3265 3310 -3 705 199 131 44 chr13 80517674 80517880 -39227018 + LTR35 LTR ERV1 334 557 -61 523 306 140 9 chr13 80517955 80518184 -39226714 - MIR SINE MIR 0 262 4 26 30 0 0 chr13 80518395 80518428 -39226470 + AT_rich Low_complexity Low_complexity 1 33 0 199 308 142 17 chr13 80520382 80520502 -39224396 - L2 LINE L2 -264 3008 2874 636 193 42 80 chr13 80521063 80521276 -39223622 + L1MCa LINE L1 6 192 -5853 * 1319 250 13 45 chr13 80521274 80521670 -39223228 + L1MCa LINE L1 672 1054 -4991 973 113 0 0 chr13 80522997 80523130 -39221768 - AluSp SINE Alu -180 133 1 207 0 0 0 chr13 80523182 80523205 -39221693 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1536 178 55 0 chr13 80523214 80523467 -39221431 - 7SLRNA srpRNA srpRNA -53 267 1 893 123 0 0 chr13 80523476 80523606 -39221292 - FLAM_A SINE Alu 0 133 4 201 266 21 75 chr13 80524259 80524353 -39220545 - L2 LINE L2 -1880 1434 1346 524 333 118 16 chr13 80524957 80525263 -39219635 + LTR16B LTR ERVL 96 432 -32 212 363 77 42 chr13 80525285 80525453 -39219445 - L2 LINE L2 -177 3095 2922 14001 125 32 20 chr13 80525488 80527747 -39217151 - MER41C-int LTR ERV1 -5558 2198 3 3238 124 82 6 chr13 80527747 80528262 -39216636 - MER41C LTR ERV1 0 554 1 226 197 15 15 chr13 80529011 80529077 -39215821 + (TA)n Simple_repeat Simple_repeat 2 67 0 5533 190 34 25 chr13 80529801 80530172 -39214726 - L1MB1 LINE L1 -7 6182 5816 2058 115 18 0 chr13 80530172 80530500 -39214398 - AluSx SINE Alu 0 333 1 5533 190 34 25 chr13 80530500 80531539 -39213359 - L1MB1 LINE L1 -373 5816 4744 459 0 0 0 chr13 80531539 80531590 -39213308 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5533 190 34 25 chr13 80531590 80532261 -39212637 - L1MB1 LINE L1 -1445 4744 4081 1775 207 98 21 chr13 80532261 80532730 -39212168 - MLT1D LTR MaLR 0 505 1 362 376 6 0 chr13 80533207 80533369 -39211529 + MIR SINE MIR 100 262 0 376 331 12 41 chr13 80533791 80533963 -39210935 - MER5B DNA MER1_type -8 170 4 292 221 10 106 chr13 80533977 80534038 -39210860 + MER5B DNA MER1_type 85 135 -43 2112 92 7 7 chr13 80534038 80534367 -39210531 - AluY SINE Alu 0 329 1 292 221 10 106 chr13 80534367 80534408 -39210490 + MER5B DNA MER1_type 135 178 0 15924 77 3 3 chr13 80534838 80536970 -39207928 + L1PA5 LINE L1 591 2721 -3425 21578 46 0 8 chr13 80536971 80540483 -39204415 + L1PA5 LINE L1 2617 6153 -1 30 27 0 0 chr13 80541539 80541576 -39203322 + AT_rich Low_complexity Low_complexity 1 37 0 1698 176 0 39 chr13 80541576 80541882 -39203016 - AluJo SINE Alu -18 294 1 267 241 17 0 chr13 80542983 80543041 -39201857 + MLT1J LTR MaLR 116 174 -337 229 250 80 10 chr13 80543204 80543304 -39201594 + MLT1L LTR MaLR 509 615 0 300 321 92 16 chr13 80544227 80544411 -39200487 - L2 LINE L2 -76 3237 3040 860 162 3 19 chr13 80546014 80546194 -39198704 - LTR2B LTR ERV1 0 490 279 602 115 0 0 chr13 80546194 80546281 -39198617 - Harlequin LTR ERV1 -575 6321 6235 26019 71 8 5 chr13 80546295 80549641 -39195257 - Harlequin LTR ERV1 -1733 5163 1807 322 244 171 0 chr13 80549645 80549727 -39195171 + LTR8 LTR ERV1 158 253 -438 1125 35 0 0 chr13 80549728 80549872 -39195026 - Harlequin LTR ERV1 -5175 1721 1578 * 4711 111 63 36 chr13 80549870 80551306 -39193592 - Harlequin LTR ERV1 -5481 1415 1 1897 201 68 32 chr13 80551306 80551749 -39193149 - LTR2B LTR ERV1 0 490 32 474 268 50 118 chr13 80551994 80552504 -39192394 + L2 LINE L2 2635 3093 -220 4929 190 24 32 chr13 80552544 80553077 -39191821 - L1MA10 LINE L1 -10 6324 5788 2016 105 0 0 chr13 80553077 80553335 -39191563 - AluSq SINE Alu -19 294 37 4929 190 24 32 chr13 80553335 80553372 -39191526 - L1MA10 LINE L1 -546 5788 5752 1064 108 6 0 chr13 80553372 80553538 -39191360 + (TA)n Simple_repeat Simple_repeat 1 167 0 4929 190 24 32 chr13 80553538 80553668 -39191230 - L1MA10 LINE L1 -582 5752 5622 297 0 0 0 chr13 80553668 80553701 -39191197 + (CA)n Simple_repeat Simple_repeat 2 34 0 423 0 0 0 chr13 80553705 80553752 -39191146 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 4929 190 24 32 chr13 80553752 80555096 -39189802 - L1MA10 LINE L1 -715 5619 4289 360 237 13 0 chr13 80555105 80555181 -39189717 + L2 LINE L2 3227 3303 -10 243 170 0 0 chr13 80555641 80555688 -39189210 + GA-rich Low_complexity Low_complexity 2 48 0 236 338 28 0 chr13 80556796 80556867 -39188031 + MIR SINE MIR 6 78 -184 1479 221 52 68 chr13 80556869 80557385 -39187513 - L1ME3A LINE L1 -8 6162 5655 1537 221 40 8 chr13 80557387 80557758 -39187140 - MLT1B LTR MaLR -5 385 3 349 208 51 138 chr13 80557894 80558206 -39186692 - L1ME4a LINE L1 -6 6115 5831 603 287 113 7 chr13 80558489 80558799 -39186099 - L1MC4a LINE L1 -1886 5922 5580 419 189 53 89 chr13 80558900 80559069 -39185829 - L1MC5 LINE L1 -48 7913 7751 654 274 83 10 chr13 80559073 80559366 -39185532 - L1MC4a LINE L1 -509 5612 5296 378 269 71 76 chr13 80559497 80559694 -39185204 - L2 LINE L2 -3 3310 3115 208 331 8 0 chr13 80560125 80560246 -39184652 + (CAA)n Simple_repeat Simple_repeat 1 122 0 848 293 28 4 chr13 80560921 80561174 -39183724 - L3 LINE CR1 -456 1121 863 312 27 0 0 chr13 80561176 80561213 -39183685 + (TG)n Simple_repeat Simple_repeat 2 38 0 293 352 85 13 chr13 80562190 80562373 -39182525 - MIR SINE MIR -54 208 16 2099 156 5 49 chr13 80562704 80563095 -39181803 - MLT1B LTR MaLR 0 390 17 249 326 65 91 chr13 80563776 80564006 -39180892 + L2 LINE L2 2836 3059 -213 206 217 133 17 chr13 80564133 80564193 -39180705 + L2 LINE L2 3205 3271 -1 1245 194 5 0 chr13 80564266 80564483 -39180415 - AluJb SINE Alu -10 302 85 471 264 101 111 chr13 80565455 80565861 -39179037 - L2 LINE L2 -3 3310 2909 1785 163 7 4 chr13 80566015 80566292 -39178606 - AluJb SINE Alu -12 300 23 204 415 0 0 chr13 80566369 80566451 -39178447 + MIR3 SINE MIR 106 187 -21 * 216 364 10 50 chr13 80566450 80566549 -39178349 - MIR3 SINE MIR -41 167 73 288 0 0 0 chr13 80566990 80567022 -39177876 + (CTG)n Simple_repeat Simple_repeat 1 32 0 197 192 0 19 chr13 80567034 80567086 -39177812 + CT-rich Low_complexity Low_complexity 2 52 0 205 242 22 11 chr13 80567218 80567309 -39177589 + A-rich Low_complexity Low_complexity 4 95 0 321 315 4 90 chr13 80568411 80568548 -39176350 - MIR SINE MIR -61 147 20 315 0 0 0 chr13 80568605 80568640 -39176258 + (TG)n Simple_repeat Simple_repeat 2 36 0 233 73 0 49 chr13 80568663 80568704 -39176194 + MER39 LTR ERV1 77 115 -592 207 0 0 0 chr13 80568711 80568734 -39176164 + (TG)n Simple_repeat Simple_repeat 2 24 0 3897 178 52 42 chr13 80568755 80569580 -39175318 + MER21A LTR ERV1 99 931 0 2244 110 3 0 chr13 80569884 80570185 -39174713 + AluSg SINE Alu 1 302 -8 417 359 70 36 chr13 80570446 80570775 -39174123 - L2 LINE L2 -8 3264 2925 215 388 0 0 chr13 80570883 80570981 -39173917 - L2 LINE L2 -532 2782 2685 181 318 16 0 chr13 80571437 80571500 -39173398 - L2 LINE L2 -991 2323 2260 206 317 134 0 chr13 80571658 80571740 -39173158 - L2 LINE L2 -8 3264 3172 692 247 53 32 chr13 80573392 80573675 -39171223 - L1ME4a LINE L1 -72 6049 5761 207 0 0 0 chr13 80573843 80573866 -39171032 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 211 263 0 0 chr13 80574200 80574238 -39170660 + L2 LINE L2 3254 3291 -22 716 202 56 39 chr13 80574820 80574998 -39169900 + MIR SINE MIR 26 206 -56 333 118 0 0 chr13 80575001 80575052 -39169846 + (TA)n Simple_repeat Simple_repeat 2 52 0 2029 149 0 13 chr13 80575289 80575605 -39169293 + AluSx SINE Alu 1 312 0 238 282 118 9 chr13 80575814 80575924 -39168974 + MIR SINE MIR 25 146 -62 210 313 0 15 chr13 80576977 80577044 -39167854 + GA-rich Low_complexity Low_complexity 1 66 0 290 200 30 65 chr13 80577087 80577199 -39167699 + MIR SINE MIR 50 150 -69 212 294 98 54 chr13 80578653 80578745 -39166153 + L2 LINE L2 3133 3228 -44 197 309 0 0 chr13 80578770 80578812 -39166086 - L3 LINE CR1 -10 1567 1526 * 252 263 118 0 chr13 80578779 80578855 -39166043 - MIR3 SINE MIR -22 186 102 6192 94 17 1 chr13 80578906 80579231 -39165667 - L1PA10 LINE L1 -14 6154 5836 315 0 0 0 chr13 80579231 80579266 -39165632 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 6192 94 17 1 chr13 80579266 80580675 -39164223 - L1PA10 LINE L1 -332 5836 4388 316 264 55 0 chr13 80580863 80580954 -39163944 - MIR SINE MIR -63 145 50 307 352 83 7 chr13 80581692 80581837 -39163061 - MIR3 SINE MIR -33 175 20 300 27 0 0 chr13 80582035 80582072 -39162826 + (CA)n Simple_repeat Simple_repeat 2 38 0 383 239 23 0 chr13 80582400 80582488 -39162410 + MIR SINE MIR 84 173 -89 249 271 12 24 chr13 80582911 80582996 -39161902 + L2 LINE L2 3230 3313 0 182 391 0 0 chr13 80583199 80583263 -39161635 - L2 LINE L2 -691 2623 2560 201 336 142 18 chr13 80583843 80583956 -39160942 - L2 LINE L2 -4 3268 3142 852 222 51 21 chr13 80583960 80584194 -39160704 - MLT1G LTR MaLR -8 582 342 270 0 0 0 chr13 80584556 80584586 -39160312 + (TG)n Simple_repeat Simple_repeat 1 30 0 6262 84 10 11 chr13 80584984 80586784 -39158114 + L1PA13 LINE L1 4338 6144 -19 588 115 21 0 chr13 80586784 80586880 -39158018 + Tigger1 DNA MER2_type 2141 2238 -180 924 210 25 89 chr13 80587001 80587315 -39157583 - L1ME2 LINE L1 -30 6134 5841 1275 209 40 7 chr13 80587321 80587598 -39157300 - MLT1E LTR MaLR -2 591 306 571 24 0 36 chr13 80587704 80587787 -39157111 + (TCTCCC)n Simple_repeat Simple_repeat 5 84 0 4874 83 15 9 chr13 80587787 80588521 -39156377 + SVA Other Other 57 794 -592 1616 295 59 23 chr13 80588621 80589305 -39155593 - L1M4c LINE L1 -4647 2312 1587 2096 198 35 7 chr13 80589305 80589769 -39155129 - L1PB4 LINE L1 -2 6154 5678 1616 295 59 23 chr13 80589769 80589989 -39154909 - L1M4c LINE L1 -5372 1587 1376 180 0 0 0 chr13 80590000 80590020 -39154878 + (TTTTTA)n Simple_repeat Simple_repeat 1 20 0 800 142 89 18 chr13 80590095 80590264 -39154634 - MER30B DNA MER1_type -4 186 6 2872 275 124 34 chr13 80590269 80590674 -39154224 - L1M4c LINE L1 -5498 1361 994 2004 98 11 0 chr13 80590674 80590939 -39153959 - AluSg1 SINE Alu -17 292 25 2872 275 124 34 chr13 80590939 80591782 -39153116 - L1M4c LINE L1 -5865 994 1 9369 183 7 17 chr13 80591878 80593487 -39151411 - L1PB1 LINE L1 -2 6149 4525 2030 135 29 22 chr13 80593487 80593798 -39151100 - AluSq SINE Alu 0 313 1 9369 183 7 17 chr13 80593798 80594858 -39150040 - L1PB1 LINE L1 -1626 4525 3456 2187 88 0 7 chr13 80594858 80595184 -39149714 - AluY SINE Alu 0 324 1 9369 183 7 17 chr13 80595184 80595400 -39149498 - L1PB1 LINE L1 -2695 3456 3239 2207 128 0 0 chr13 80595400 80595704 -39149194 - AluSg SINE Alu -6 304 1 9369 183 7 17 chr13 80595704 80596033 -39148865 - L1PB1 LINE L1 -2912 3239 2968 180 77 0 0 chr13 80596116 80596142 -39148756 + (T)n Simple_repeat Simple_repeat 1 26 0 299 113 0 38 chr13 80597914 80597967 -39146931 - L1ME LINE L1 -448 5673 5623 380 353 42 12 chr13 80598249 80598416 -39146482 + MIR SINE MIR 32 203 -59 1285 176 0 21 chr13 80598434 80598667 -39146231 + AluJo SINE Alu 84 311 -1 2103 127 27 14 chr13 80599145 80599514 -39145384 + L1MA3 LINE L1 5932 6305 0 250 218 0 23 chr13 80599593 80599680 -39145218 - L1MC4 LINE L1 -1344 6698 6614 823 248 98 22 chr13 80599700 80600147 -39144751 - L1ME4a LINE L1 -157 5964 5484 1758 142 7 14 chr13 80600253 80600534 -39144364 + AluJo SINE Alu 13 291 -21 1502 338 62 12 chr13 80600553 80601276 -39143622 + L3 LINE CR1 818 1576 -1 334 200 15 0 chr13 80601401 80601466 -39143432 - MER5A DNA MER1_type -80 109 44 706 220 26 21 chr13 80601483 80601674 -39143224 + MER106A DNA MER1_type 1 192 -44 602 277 23 17 chr13 80601719 80601896 -39143002 - MER5B DNA MER1_type 0 178 1 2269 128 12 2 chr13 80602185 80602588 -39142310 - L1P4 LINE L1 -541 5627 5221 390 169 0 0 chr13 80602594 80602671 -39142227 - L1 LINE L1 -1290 4856 4780 196 371 0 0 chr13 80602702 80602772 -39142126 + L2 LINE L2 3194 3263 -9 435 286 43 38 chr13 80603362 80603547 -39141351 - MER5A DNA MER1_type -1 188 3 2592 104 3 3 chr13 80604104 80604468 -39140430 - THE1B LTR MaLR 0 364 1 1988 159 3 0 chr13 80604515 80604810 -39140088 - AluSx SINE Alu -16 296 1 19757 49 3 1 chr13 80604933 80608194 -39136704 + L1PA5 LINE L1 2887 6151 -3 448 311 66 13 chr13 80608343 80608494 -39136404 + MIR SINE MIR 31 189 -73 252 204 74 0 chr13 80608492 80608546 -39136352 - L2 LINE L2 0 3313 3256 * 358 267 0 0 chr13 80608551 80608626 -39136272 + MER5A DNA MER1_type 4 78 -111 456 181 11 11 chr13 80608898 80608992 -39135906 - Charlie8 DNA MER1_type -2192 225 132 552 240 169 0 chr13 80609075 80609229 -39135669 + MER5A DNA MER1_type 10 189 0 * 617 209 25 43 chr13 80609229 80609384 -39135514 - L2 LINE L2 -52 3261 3110 360 217 21 153 chr13 80609392 80609627 -39135271 - MLT1H1 LTR MaLR -214 376 173 202 188 83 0 chr13 80609627 80609675 -39135223 - L2 LINE L2 -3 3310 3259 394 273 16 50 chr13 80609685 80609862 -39135036 - MLT1H1 LTR MaLR -382 173 3 696 332 40 7 chr13 80609862 80610183 -39134715 - L2 LINE L2 -276 3037 2697 503 294 56 42 chr13 80610192 80610552 -39134346 + L1MC4 LINE L1 7528 7892 -150 216 0 0 0 chr13 80610561 80610585 -39134313 + (TG)n Simple_repeat Simple_repeat 2 25 0 190 238 24 0 chr13 80610724 80610766 -39134132 + L2 LINE L2 3261 3303 -10 183 305 68 0 chr13 80610868 80610927 -39133971 + MIR SINE MIR 89 151 -57 483 287 72 17 chr13 80611284 80611465 -39133433 - L3 LINE CR1 -91 1486 1296 205 200 50 0 chr13 80612816 80612876 -39132022 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 208 223 0 128 chr13 80612876 80612970 -39131928 + MIR SINE MIR 20 101 -107 534 285 42 26 chr13 80613152 80613345 -39131553 + MIR3 SINE MIR 10 205 -3 202 298 18 0 chr13 80613402 80613459 -39131439 - L2 LINE L2 -246 3067 3010 245 312 129 0 chr13 80613532 80613625 -39131273 + MIR SINE MIR 1 105 -157 416 279 45 19 chr13 80614596 80614750 -39130148 - MIR3 SINE MIR -13 195 38 324 189 0 54 chr13 80614766 80614840 -39130058 - MER113 DNA MER1_type? 0 521 452 242 228 0 0 chr13 80614937 80614994 -39129904 - MER113 DNA MER1_type? -464 57 1 533 260 55 28 chr13 80615006 80615187 -39129711 + MIR SINE MIR 28 213 -49 23 33 0 0 chr13 80615193 80615223 -39129675 + AT_rich Low_complexity Low_complexity 1 30 0 4596 67 5 15 chr13 80615223 80615807 -39129091 - SVA Other Other -3 1383 806 1298 111 10 24 chr13 80615907 80616115 -39128783 + L1PA11 LINE L1 5968 6172 -2 3470 217 71 35 chr13 80616115 80617248 -39127650 + L1MB5 LINE L1 4018 5190 -956 744 248 0 0 chr13 80617248 80617393 -39127505 + FRAM SINE Alu 1 138 -38 3886 188 19 41 chr13 80617402 80617541 -39127357 + L1MB5 LINE L1 5181 5321 -853 1561 189 20 20 chr13 80617541 80617838 -39127060 + AluSx SINE Alu 1 297 -15 3886 188 19 41 chr13 80617838 80618616 -39126282 + L1MB5 LINE L1 5321 6082 -92 1835 171 4 0 chr13 80618616 80618920 -39125978 - AluJb SINE Alu 0 305 1 3886 188 19 41 chr13 80618920 80619004 -39125894 + L1MB5 LINE L1 6082 6166 -8 345 140 0 0 chr13 80619208 80619265 -39125633 + (TA)n Simple_repeat Simple_repeat 1 57 0 453 19 0 0 chr13 80619265 80619319 -39125579 + (GA)n Simple_repeat Simple_repeat 2 55 0 280 214 48 69 chr13 80619322 80619467 -39125431 + L1M4c LINE L1 1700 1841 -4543 426 255 10 49 chr13 80619543 80619747 -39125151 + L1M4c LINE L1 2025 2220 -4164 * 1044 140 70 48 chr13 80619741 80619827 -39125071 + L1M4 LINE L1 5530 5613 -571 2396 57 7 3 chr13 80619827 80620125 -39124773 + AluY SINE Alu 1 299 -12 1044 140 70 48 chr13 80620125 80620266 -39124632 + L1M4 LINE L1 5613 5762 -422 261 317 67 43 chr13 80620984 80621375 -39123523 - L1ME LINE L1 -239 5882 5483 957 158 0 0 chr13 80621508 80621647 -39123251 + FRAM SINE Alu 20 158 -18 500 262 8 0 chr13 80621709 80621831 -39123067 + MIR SINE MIR 140 262 0 2010 110 43 0 chr13 80621848 80622130 -39122768 - AluSq SINE Alu -19 294 1 1739 188 7 7 chr13 80622922 80623230 -39121668 - AluJo SINE Alu -4 308 1 259 227 200 0 chr13 80624068 80624143 -39120755 - MIR SINE MIR -121 141 52 346 280 40 0 chr13 80624720 80624820 -39120078 + MIR SINE MIR 34 137 -71 2191 104 0 10 chr13 80625127 80625424 -39119474 - AluSg SINE Alu -16 294 1 208 211 0 0 chr13 80626147 80626185 -39118713 - MIR SINE MIR -90 118 81 242 308 159 28 chr13 80626194 80626301 -39118597 - L2 LINE L2 -9 3263 3143 931 364 78 9 chr13 80626776 80627388 -39117510 + L2 LINE L2 2374 3029 -243 830 147 6 0 chr13 80627441 80627598 -39117300 - THE1C-int LTR MaLR -1491 160 3 1623 172 72 39 chr13 80627599 80627960 -39116938 - THE1C LTR MaLR 0 375 3 2522 151 5 45 chr13 80627963 80628171 -39116727 + L1 LINE L1 4121 4336 -1810 840 131 0 51 chr13 80628171 80628308 -39116590 - FLAM_C SINE Alu -3 130 1 2522 151 5 45 chr13 80628308 80628376 -39116522 + L1 LINE L1 4336 4405 -1741 2028 133 0 0 chr13 80628376 80628696 -39116202 + AluSc SINE Alu 1 320 0 2522 151 5 45 chr13 80628696 80628970 -39115928 + L1 LINE L1 4405 4653 -1493 2388 101 25 0 chr13 80628971 80629327 -39115571 + THE1A-int LTR MaLR 1216 1580 0 2457 106 17 0 chr13 80629327 80629676 -39115222 + THE1A LTR MaLR 1 355 0 1566 263 25 6 chr13 80629676 80630197 -39114701 - HERVL-B3 LTR ERVL -5123 531 1 3096 165 7 55 chr13 80630197 80630778 -39114120 - MLT2B3 LTR ERVL 0 554 2 1627 179 69 0 chr13 80630826 80631116 -39113782 + AluJb SINE Alu 1 310 -2 21 0 0 0 chr13 80631141 80631162 -39113736 + AT_rich Low_complexity Low_complexity 1 21 0 1121 289 85 16 chr13 80631259 80632091 -39112807 + L1M4 LINE L1 2237 3126 -3020 271 338 56 5 chr13 80632102 80632340 -39112558 - L1MC/D LINE L1 -612 5552 5340 2120 107 17 7 chr13 80632460 80632776 -39112122 - AluSx SINE Alu 0 312 1 268 413 55 0 chr13 80632798 80632999 -39111899 - L3 LINE CR1 -348 1229 1018 629 321 56 16 chr13 80633194 80633446 -39111452 + MIR SINE MIR 1 262 0 267 267 33 56 chr13 80633498 80633588 -39111310 + MIR SINE MIR 8 95 -167 19752 130 13 17 chr13 80633632 80637034 -39107864 + L1P LINE L1 11 3397 -2749 312 71 0 0 chr13 80637029 80637071 -39107827 - L1PA3 LINE L1 -588 5567 5526 * 4588 37 5 0 chr13 80637059 80637624 -39107274 + L1PA3 LINE L1 5564 6131 -24 8075 145 15 6 chr13 80637765 80639750 -39105148 - L1PA12 LINE L1 -306 7300 5297 234 0 0 0 chr13 80639756 80639782 -39105116 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 705 132 0 0 chr13 80639783 80639889 -39105009 - L1PB1 LINE L1 -14 6853 6748 16068 170 29 12 chr13 80639891 80642861 -39102037 - L1PB1 LINE L1 -212 6655 3738 243 0 0 0 chr13 80642861 80642888 -39102010 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 16068 170 29 12 chr13 80642888 80644601 -39100297 - L1PB1 LINE L1 -3129 3738 2056 2320 93 0 3 chr13 80644601 80644902 -39099996 + AluY SINE Alu 1 300 -11 16068 170 29 12 chr13 80644902 80646756 -39098142 - L1PB1 LINE L1 -4811 2056 1 11232 231 25 22 chr13 80646758 80651132 -39093766 - L1PA12 LINE L1 -2285 5299 379 4289 105 28 31 chr13 80651132 80651778 -39093120 - LTR9B LTR ERV1 0 644 1 11232 231 25 22 chr13 80651778 80652152 -39092746 - L1PA12 LINE L1 -7205 379 7 292 114 0 0 chr13 80652164 80652208 -39092690 - Alu SINE Alu -13 289 246 286 185 48 82 chr13 80652221 80652367 -39092531 - L1M4 LINE L1 -2123 4023 3883 1657 157 194 50 chr13 80652410 80652889 -39092009 - LTR10A LTR ERV1 -61 548 1 5194 252 16 24 chr13 80652892 80654394 -39090504 - LTR10A-int LTR ERV1 -4 6645 5156 7207 102 56 43 chr13 80654472 80656652 -39088246 - Harlequin LTR ERV1 -3924 2972 718 617 248 84 95 chr13 80656841 80657567 -39087331 - Harlequin LTR ERV1 -5931 718 1 1570 148 59 73 chr13 80657577 80657949 -39086949 - LTR10A LTR ERV1 -62 547 181 241 251 145 63 chr13 80657951 80658158 -39086740 - LTR10A LTR ERV1 -374 235 12 1061 222 0 0 chr13 80658189 80658401 -39086497 - Tigger3(Golem) DNA MER2_type -1 3028 2817 18335 68 1 37 chr13 80658501 80661210 -39083688 - L1P LINE L1 -3315 2831 219 295 95 68 81 chr13 80662640 80662714 -39082184 + MLT1D LTR MaLR 1 73 -432 934 254 169 16 chr13 80662751 80663184 -39081714 + MER101B LTR ERV1 33 531 -39 1478 161 75 42 chr13 80663232 80663567 -39081331 + MLT1D LTR MaLR 69 414 -91 660 273 20 0 chr13 80663567 80663717 -39081181 - L1M3b LINE L1 -5701 580 428 279 120 0 20 chr13 80663717 80663767 -39081131 + MLT1D LTR MaLR 414 462 -43 25 51 0 0 chr13 80663900 80663939 -39080959 + AT_rich Low_complexity Low_complexity 1 39 0 1730 146 75 39 chr13 80665006 80665368 -39079530 + THE1C LTR MaLR 1 375 0 285 282 204 45 chr13 80665714 80665934 -39078964 - MIR SINE MIR -1 261 7 812 235 22 0 chr13 80666686 80666869 -39078029 + MER5A DNA MER1_type 3 189 0 201 311 66 0 chr13 80666871 80666932 -39077966 - MIR SINE MIR -107 155 91 12013 205 31 10 chr13 80667318 80670126 -39074772 + L1PA13 LINE L1 3 2882 -3915 662 86 21 0 chr13 80670288 80670381 -39074517 - THE1-int LTR MaLR -1270 310 216 * 4094 88 0 4 chr13 80670376 80670897 -39074001 + THE1B-int LTR MaLR 1057 1575 -5 2340 131 19 45 chr13 80670901 80671275 -39073623 + THE1B LTR MaLR 1 364 0 193 330 45 23 chr13 80671341 80671429 -39073469 - L2 LINE L2 -309 2963 2874 853 323 93 42 chr13 80671528 80672052 -39072846 - L2 LINE L2 -559 2755 2205 1751 138 22 0 chr13 80672058 80672334 -39072564 - MER57B LTR ERV1 -11 423 142 7441 194 16 41 chr13 80672434 80674351 -39070547 - L1PA12 LINE L1 -2951 4633 2752 2165 134 0 3 chr13 80674351 80674656 -39070242 - AluSq SINE Alu -9 304 1 7441 194 16 41 chr13 80674656 80674861 -39070037 - L1PA12 LINE L1 -4832 2752 2543 473 288 206 12 chr13 80675118 80675438 -39069460 - MLT1J2 LTR MaLR -4 446 65 357 248 124 13 chr13 80677505 80677658 -39067240 + MIR SINE MIR 90 259 -3 234 295 147 11 chr13 80677826 80677921 -39066977 + L2 LINE L2 3200 3307 -6 392 281 54 27 chr13 80679354 80679539 -39065359 + MIR SINE MIR 8 197 -65 9504 173 21 81 chr13 80679877 80680202 -39064696 - L1P LINE L1 -869 5277 4934 2010 150 3 3 chr13 80680202 80680508 -39064390 + AluSx SINE Alu 3 308 -4 9504 173 21 81 chr13 80680508 80681017 -39063881 - L1P LINE L1 -1212 4934 4396 936 141 7 13 chr13 80681017 80681166 -39063732 - AluSg/x SINE Alu -4 308 161 9504 173 21 81 chr13 80681166 80682472 -39062426 - L1P LINE L1 -1750 4396 3125 4555 185 65 9 chr13 80682647 80683910 -39060988 + L1MA7 LINE L1 4966 6291 0 2175 104 3 3 chr13 80684330 80684619 -39060279 - AluSq SINE Alu -24 289 1 1696 163 30 7 chr13 80684619 80684913 -39059985 - AluSx SINE Alu -10 302 1 2220 82 3 26 chr13 80684987 80685290 -39059608 - AluSp SINE Alu -17 296 1 294 204 92 10 chr13 80685564 80685662 -39059236 + L1 LINE L1 4241 4346 -1800 299 288 151 20 chr13 80685696 80685842 -39059056 - MIR SINE MIR -26 236 72 21 0 0 0 chr13 80686263 80686284 -39058614 + AT_rich Low_complexity Low_complexity 1 21 0 4325 250 65 22 chr13 80686425 80687619 -39057279 + L1MDa LINE L1 13 1257 -5283 216 0 0 0 chr13 80687621 80687645 -39057253 + (CATA)n Simple_repeat Simple_repeat 2 25 0 719 203 34 27 chr13 80687646 80687794 -39057104 + AluJo SINE Alu 32 180 -132 23 33 0 0 chr13 80688949 80688979 -39055919 + AT_rich Low_complexity Low_complexity 1 30 0 2098 120 7 20 chr13 80689695 80689996 -39054902 + AluSx SINE Alu 1 297 -15 22 35 0 0 chr13 80691634 80691663 -39053235 + AT_rich Low_complexity Low_complexity 1 29 0 623 305 88 63 chr13 80692021 80692464 -39052434 - L2 LINE L2 -1 3312 2859 1338 57 0 0 chr13 80692486 80692644 -39052254 + AluY SINE Alu 130 287 -24 301 68 0 34 chr13 80692651 80692710 -39052188 + (CAAAAA)n Simple_repeat Simple_repeat 5 61 0 2261 261 101 58 chr13 80692722 80693700 -39051198 - L2 LINE L2 -509 2805 1786 21 0 0 0 chr13 80693896 80693917 -39050981 + AT_rich Low_complexity Low_complexity 1 21 0 185 291 51 13 chr13 80693919 80693998 -39050900 - L3 LINE CR1 -2 1575 1494 457 348 86 0 chr13 80694249 80694436 -39050462 + MIR SINE MIR 51 253 -9 506 43 14 0 chr13 80695007 80695076 -39049822 + (TA)n Simple_repeat Simple_repeat 1 70 0 214 190 38 63 chr13 80695081 80695239 -39049659 + (TATAA)n Simple_repeat Simple_repeat 1 154 0 233 268 0 0 chr13 80695430 80695486 -39049412 + L2 LINE L2 3180 3235 -78 324 271 36 84 chr13 80695528 80695599 -39049299 - MIR3 SINE MIR -16 192 119 2701 121 51 14 chr13 80695599 80696012 -39048886 + MSTA LTR MaLR 1 428 0 324 271 36 84 chr13 80696012 80696106 -39048792 - MIR3 SINE MIR -89 119 35 459 219 80 20 chr13 80696251 80696402 -39048496 - L2 LINE L2 -5 3308 3149 250 245 0 0 chr13 80696548 80696597 -39048301 - L2 LINE L2 -84 3229 3181 567 272 89 6 chr13 80696751 80696931 -39047967 + MIR SINE MIR 57 251 -11 2340 159 64 9 chr13 80697469 80697923 -39046975 - L1MA7 LINE L1 0 6291 5813 1006 128 27 0 chr13 80697923 80698072 -39046826 - FAM SINE Alu -16 169 17 21 0 0 0 chr13 80698109 80698130 -39046768 + AT_rich Low_complexity Low_complexity 1 21 0 626 140 4 0 chr13 80698203 80698311 -39046587 + LTR23 LTR ERV1 320 435 -10 640 180 14 29 chr13 80698763 80698902 -39045996 + MIR SINE MIR 126 262 0 314 340 100 7 chr13 80699063 80699213 -39045685 + L2 LINE L2 2883 3046 -226 704 341 83 15 chr13 80699325 80699846 -39045052 + L2 LINE L2 2748 3313 0 585 222 24 16 chr13 80699855 80699981 -39044917 - MIR SINE MIR -63 145 19 197 279 0 0 chr13 80700036 80700079 -39044819 + L2 LINE L2 3137 3179 -93 1087 187 150 7 chr13 80700080 80700366 -39044532 + MER33 DNA MER1_type 1 316 -8 194 309 135 56 chr13 80700956 80701134 -39043764 - L2 LINE L2 -54 3218 3027 340 259 29 72 chr13 80701354 80701493 -39043405 - MIR3 SINE MIR -61 147 15 337 298 258 0 chr13 80702276 80702427 -39042471 - MIR3 SINE MIR -8 200 11 504 245 145 26 chr13 80702821 80703044 -39041854 + MIR SINE MIR 5 251 -11 1073 211 17 0 chr13 80703115 80703290 -39041608 + MER45A DNA AcHobo 1 178 0 325 302 134 17 chr13 80703343 80703522 -39041376 + MIR3 SINE MIR 1 200 -8 428 307 0 47 chr13 80704169 80704296 -39040602 + MIR SINE MIR 30 150 -58 424 213 219 43 chr13 80704522 80704686 -39040212 - MIR3 SINE MIR -1 207 15 293 304 61 49 chr13 80705535 80705681 -39039217 - MIR SINE MIR -63 145 37 314 318 16 16 chr13 80706335 80706464 -39038434 + MIR3 SINE MIR 76 204 -4 844 337 12 4 chr13 80706573 80706822 -39038076 - MIR SINE MIR -4 258 8 266 336 103 0 chr13 80708022 80708138 -39036760 + L2 LINE L2 3143 3270 -2 612 227 13 7 chr13 80708320 80708474 -39036424 + MER103 DNA DNA 9 163 -3 296 298 145 8 chr13 80708773 80708904 -39035994 + MIR3 SINE MIR 28 176 -32 261 0 0 0 chr13 80709558 80709587 -39035311 + (CA)n Simple_repeat Simple_repeat 1 29 0 278 298 158 0 chr13 80711925 80712039 -39032859 + L2 LINE L2 3136 3267 -5 229 314 69 39 chr13 80712143 80712245 -39032653 - L2 LINE L2 -497 2817 2713 196 267 0 0 chr13 80714000 80714045 -39030853 + MIR SINE MIR 46 90 -118 541 204 0 0 chr13 80714045 80714133 -39030765 + MLT1D LTR MaLR 1 88 -417 * 1253 209 17 42 chr13 80714130 80714417 -39030481 + MLT1D LTR MaLR 226 505 0 335 248 88 18 chr13 80714417 80714530 -39030368 + MIR3 SINE MIR 86 206 -2 188 154 26 51 chr13 80715667 80715706 -39029192 + L2 LINE L2 3204 3241 -31 225 289 53 26 chr13 80716093 80716169 -39028729 - MIR SINE MIR -90 118 41 427 211 67 0 chr13 80716694 80716784 -39028114 + Charlie4 DNA MER1_type 17 112 -1849 1816 256 120 36 chr13 80716832 80717474 -39027424 + L1M4 LINE L1 1 696 -5846 377 237 23 92 chr13 80717744 80717875 -39027023 - L2 LINE L2 -3 3310 3189 642 322 93 40 chr13 80718144 80718616 -39026282 - L2 LINE L2 -926 2388 1892 540 275 61 11 chr13 80718868 80719090 -39025808 + MIR SINE MIR 18 249 -13 285 348 13 51 chr13 80720898 80721056 -39023842 + MIR3 SINE MIR 54 205 -3 187 291 18 18 chr13 80722104 80722159 -39022739 + L3 LINE CR1 1309 1363 -214 212 268 0 18 chr13 80722237 80722293 -39022605 + L3 LINE CR1 1371 1425 -152 333 270 7 44 chr13 80722962 80723099 -39021799 + CT-rich Low_complexity Low_complexity 1 132 0 352 264 11 11 chr13 80723336 80723427 -39021471 + MIR SINE MIR 64 154 -108 230 90 15 45 chr13 80723436 80723503 -39021395 + (TATAA)n Simple_repeat Simple_repeat 2 66 0 35 24 0 0 chr13 80723616 80723658 -39021240 + AT_rich Low_complexity Low_complexity 1 42 0 181 98 49 0 chr13 80723669 80723710 -39021188 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 237 202 20 81 chr13 80724244 80724343 -39020555 - MIR3 SINE MIR -12 196 104 351 121 0 0 chr13 80724484 80724542 -39020356 + (CA)n Simple_repeat Simple_repeat 1 58 0 1124 305 93 14 chr13 80725119 80725536 -39019362 + L3 LINE CR1 1113 1562 -15 307 290 101 43 chr13 80726948 80727155 -39017743 + L1M4 LINE L1 2279 2497 -4328 25 0 0 0 chr13 80727183 80727208 -39017690 + AT_rich Low_complexity Low_complexity 1 25 0 1739 236 5 5 chr13 80727466 80727835 -39017063 + L1PA15 LINE L1 1 369 -6418 7617 214 15 25 chr13 80727839 80730256 -39014642 + L1PA15 LINE L1 2309 4805 -2011 2439 110 8 31 chr13 80730256 80730639 -39014259 + THE1C LTR MaLR 2 375 0 7617 214 15 25 chr13 80730639 80732631 -39012267 + L1PA15 LINE L1 4805 6816 0 2469 224 49 133 chr13 80732632 80733166 -39011732 + L1M4 LINE L1 2564 3141 -3503 1960 145 7 3 chr13 80733166 80733455 -39011443 - AluSx SINE Alu -18 294 5 2469 224 49 133 chr13 80733455 80733890 -39011008 + L1M4 LINE L1 3141 3611 -3033 824 222 52 0 chr13 80733890 80734084 -39010814 + MLT1B LTR MaLR 187 390 0 2469 224 49 133 chr13 80734084 80734646 -39010252 + L1M4 LINE L1 3611 4073 -2571 1932 130 3 77 chr13 80734646 80734970 -39009928 + AluSx SINE Alu 1 300 -12 2469 224 49 133 chr13 80734970 80735172 -39009726 + L1M4 LINE L1 4073 4290 -2354 * 22941 46 1 0 chr13 80735169 80738169 -39006729 - L1PA3 LINE L1 -2327 3819 819 12984 34 0 0 chr13 80738169 80740501 -39004397 + L1PA3 LINE L1 3821 6152 -3 3576 179 25 6 chr13 80740554 80741457 -39003441 + Tigger3b DNA MER2_type 1 980 -251 934 218 49 57 chr13 80741569 80741955 -39002943 - Charlie1b DNA MER1_type -99 424 42 683 261 27 0 chr13 80742333 80742517 -39002381 - MIR SINE MIR 0 262 74 4476 19 0 0 chr13 80743694 80744211 -39000687 + L1PA2 LINE L1 5639 6155 0 7600 29 1 0 chr13 80744220 80745197 -38999701 + L1PA3 LINE L1 5175 6152 -3 3809 131 32 0 chr13 80745219 80745808 -38999090 + THE1-int LTR MaLR 457 1064 -516 2193 139 19 27 chr13 80745826 80746193 -38998705 - THE1B LTR MaLR 0 364 1 296 299 44 88 chr13 80746374 80746511 -38998387 + L2 LINE L2 3137 3267 -5 1869 159 99 87 chr13 80746749 80747253 -38997645 - MLT2B1 LTR ERVL 0 520 11 16440 32 1 1 chr13 80747396 80750138 -38994760 - L1PA3 LINE L1 -3 6152 3410 253 288 113 0 chr13 80750238 80750318 -38994580 + MIR SINE MIR 86 174 -88 587 196 11 95 chr13 80750550 80750729 -38994169 - MER103 DNA DNA -1 165 2 659 248 0 7 chr13 80751064 80751205 -38993693 + Tigger3(Golem) DNA MER2_type 1 140 -2889 1392 154 28 0 chr13 80751206 80751453 -38993445 + Tigger3(Golem) DNA MER2_type 2773 3026 -3 706 200 0 8 chr13 80751654 80751784 -38993114 + AluJo SINE Alu 6 134 -178 414 171 0 26 chr13 80751821 80751897 -38993001 + AluJo SINE Alu 138 211 -101 442 304 47 12 chr13 80752671 80752842 -38992056 - MLT1I LTR MaLR -232 177 1 392 307 73 27 chr13 80753224 80753374 -38991524 + L2 LINE L2 3115 3271 -1 295 331 103 6 chr13 80753397 80753572 -38991326 + L3b LINE CR1 1303 1494 -89 554 296 4 52 chr13 80755273 80755523 -38989375 + L1M3b LINE L1 8 245 -6036 * 748 230 36 5 chr13 80755521 80755743 -38989155 - L1M3b LINE L1 -4780 1501 1273 2312 270 39 50 chr13 80755747 80757191 -38987707 + L1M3b LINE L1 247 1556 -4725 20045 62 8 0 chr13 80757291 80760804 -38984094 + L1PA6 LINE L1 2650 6154 0 430 284 40 54 chr13 80761569 80761717 -38983181 + MIR3 SINE MIR 58 203 -5 369 262 43 92 chr13 80762318 80762459 -38982439 - MIR3 SINE MIR -67 141 8 1959 47 0 4 chr13 80762802 80763036 -38981862 + AluY SINE Alu 70 302 -9 395 283 0 0 chr13 80763391 80763497 -38981401 - MIR SINE MIR 0 262 157 301 237 105 119 chr13 80763564 80763597 -38981301 + L2 LINE L2 3098 3130 -183 1872 194 8 6 chr13 80763597 80763958 -38980940 - MLT1A1 LTR MaLR -3 362 1 301 237 105 119 chr13 80763958 80764143 -38980755 + L2 LINE L2 3130 3313 0 371 293 19 9 chr13 80764692 80764798 -38980100 - MER5B DNA MER1_type -70 108 2 198 128 0 0 chr13 80764825 80764864 -38980034 + (TC)n Simple_repeat Simple_repeat 2 40 0 720 168 0 0 chr13 80764873 80764986 -38979912 - FLAM_C SINE Alu -30 113 1 4808 181 49 1 chr13 80765374 80766318 -38978580 - L1PA12 LINE L1 -4812 2769 1781 3259 190 12 7 chr13 80766314 80767379 -38977519 - L1MB1 LINE L1 -221 5947 4828 * 303 175 0 0 chr13 80767379 80767436 -38977462 + (TA)n Simple_repeat Simple_repeat 1 57 0 2139 138 0 0 chr13 80767497 80767802 -38977096 - AluSx SINE Alu -7 305 1 468 224 9 0 chr13 80767805 80767921 -38976977 - L1MB1 LINE L1 -1662 4484 4368 1739 272 61 27 chr13 80768162 80769271 -38975627 - L1ME LINE L1 -636 5528 4385 276 317 61 0 chr13 80769404 80769486 -38975412 - L2 LINE L2 0 3272 3186 238 324 147 88 chr13 80769489 80769659 -38975239 - L2 LINE L2 -12 3260 3081 652 313 154 35 chr13 80770675 80771381 -38973517 + L2 LINE L2 2188 2977 -337 190 312 78 71 chr13 80771537 80771678 -38973220 + L2 LINE L2 3168 3309 -4 381 294 44 22 chr13 80772146 80772282 -38972616 + MIR SINE MIR 114 252 -10 211 234 26 26 chr13 80773541 80773618 -38971280 + (TA)n Simple_repeat Simple_repeat 2 78 0 228 204 20 0 chr13 80774005 80774054 -38970844 + L2 LINE L2 3221 3270 -2 511 311 101 25 chr13 80775992 80776230 -38968668 + MIR SINE MIR 7 262 0 249 196 0 0 chr13 80777641 80777692 -38967206 + L1MC4 LINE L1 6653 6703 -1339 215 105 35 53 chr13 80777692 80777749 -38967149 + (TA)n Simple_repeat Simple_repeat 2 57 0 189 213 0 0 chr13 80778128 80778175 -38966723 + (TA)n Simple_repeat Simple_repeat 2 48 0 2225 107 3 0 chr13 80779505 80779795 -38965103 - AluSp SINE Alu -21 292 2 2298 107 3 0 chr13 80780856 80781165 -38963733 - AluSx SINE Alu 0 312 3 221 352 26 31 chr13 80781218 80781411 -38963487 + L2 LINE L2 2155 2346 -968 3463 73 6 4 chr13 80781602 80782087 -38962811 + L1PA8 LINE L1 5653 6172 0 236 214 196 98 chr13 80782185 80782297 -38962601 + MIR SINE MIR 64 186 -76 322 314 59 35 chr13 80782402 80782571 -38962327 + MIR SINE MIR 52 224 -38 2218 163 118 9 chr13 80782731 80783179 -38961719 - MLT1D LTR MaLR -8 497 1 334 323 39 16 chr13 80783475 80783602 -38961296 - L2 LINE L2 0 3272 3143 502 339 78 19 chr13 80783638 80783957 -38960941 + MLT1I LTR MaLR 71 408 -1 22 0 0 0 chr13 80784296 80784318 -38960580 + AT_rich Low_complexity Low_complexity 1 22 0 252 315 74 5 chr13 80784323 80784526 -38960372 - L1ME4a LINE L1 -1 6120 5904 924 258 129 23 chr13 80784704 80785308 -38959590 - L1ME1 LINE L1 -4 6162 5426 371 216 52 0 chr13 80785340 80785493 -38959405 + (TA)n Simple_repeat Simple_repeat 2 162 0 205 186 0 0 chr13 80785577 80785620 -38959278 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 67 0 0 chr13 80786238 80786283 -38958615 + AT_rich Low_complexity Low_complexity 1 45 0 21128 97 14 8 chr13 80786344 80790415 -38954483 + L1PA8 LINE L1 2069 6165 -7 1504 228 34 50 chr13 80790549 80790966 -38953932 - MLT2B1 LTR ERVL -2 518 109 2009 121 4 4 chr13 80791160 80791466 -38953432 - AluSx SINE Alu 0 306 1 3931 68 2 4 chr13 80791902 80792418 -38952480 + L1PA8 LINE L1 5653 6167 -5 1663 212 156 41 chr13 80792548 80793010 -38951888 - MLT2B2 LTR ERVL 0 515 1 240 222 32 0 chr13 80793313 80793376 -38951522 + MER5A DNA MER1_type 56 120 -69 21 57 0 0 chr13 80794915 80794950 -38949948 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 80796137 80796165 -38948733 + AT_rich Low_complexity Low_complexity 1 28 0 478 255 11 0 chr13 80796273 80796367 -38948531 - MER58 DNA MER1_type -2325 95 1 25 31 0 0 chr13 80796505 80796537 -38948361 + AT_rich Low_complexity Low_complexity 1 32 0 281 341 83 48 chr13 80797203 80797455 -38947443 + MIR SINE MIR 2 262 0 454 214 66 29 chr13 80797749 80797907 -38946991 - MER20 DNA MER1_type -21 198 1 412 289 74 15 chr13 80798418 80798553 -38946345 + L2 LINE L2 3165 3307 -6 1023 201 56 67 chr13 80798630 80798899 -38945999 + L1PB4 LINE L1 5883 6148 -8 269 365 28 9 chr13 80802620 80802727 -38942171 - L2 LINE L2 0 3272 3164 28 48 0 0 chr13 80802741 80802783 -38942115 + AT_rich Low_complexity Low_complexity 1 42 0 181 276 118 0 chr13 80802891 80802967 -38941931 - MIR SINE MIR -116 146 62 537 299 116 73 chr13 80803066 80803619 -38941279 - L2 LINE L2 0 3313 2705 2215 103 0 0 chr13 80803619 80803900 -38940998 - AluSq SINE Alu -32 281 1 537 299 116 73 chr13 80803900 80804062 -38940836 - L2 LINE L2 -608 2705 2551 728 226 49 19 chr13 80804082 80804348 -38940550 - L1MC5 LINE L1 -44 7917 7644 703 179 0 0 chr13 80804440 80804585 -38940313 - L1MA4 LINE L1 -4 6296 6152 973 231 131 31 chr13 80804625 80805075 -38939823 - L1MC5 LINE L1 -313 7648 7154 659 259 142 37 chr13 80805079 80805453 -38939445 - L2 LINE L2 -755 2559 2147 1454 242 96 43 chr13 80805803 80806315 -38938583 + MLT1E1 LTR MaLR 113 651 -3 21 0 0 0 chr13 80806870 80806891 -38938007 + AT_rich Low_complexity Low_complexity 1 21 0 345 109 0 0 chr13 80807225 80807280 -38937618 + (TC)n Simple_repeat Simple_repeat 2 56 0 240 217 98 0 chr13 80807353 80807426 -38937472 + MLT1J2 LTR MaLR 49 166 -332 258 32 0 0 chr13 80807597 80807628 -38937270 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr13 80807990 80808012 -38936886 + AT_rich Low_complexity Low_complexity 1 22 0 1316 160 67 97 chr13 80808652 80808983 -38935915 + LTR47A LTR ERVL 132 452 0 376 344 132 7 chr13 80808990 80809278 -38935620 - L2 LINE L2 -488 2826 2503 2162 110 9 35 chr13 80812441 80812760 -38932138 + AluSx SINE Alu 1 311 -1 347 381 39 19 chr13 80812858 80813118 -38931780 + L1MEd LINE L1 421 685 -5434 2710 178 11 13 chr13 80813133 80813668 -38931230 + L1MC/D LINE L1 5258 5791 -553 471 139 0 0 chr13 80813729 80813801 -38931097 + AluJ/FLAM SINE Alu 1 72 -240 965 226 41 0 chr13 80813801 80814044 -38930854 + L1ME1 LINE L1 5673 5925 -241 2341 294 85 15 chr13 80814183 80815073 -38929825 - L2 LINE L2 -2089 1225 273 450 0 0 0 chr13 80816229 80816279 -38928619 + (TA)n Simple_repeat Simple_repeat 2 51 0 8326 169 18 11 chr13 80816279 80818533 -38926365 - L1P5 LINE L1 -371 5780 3514 2280 108 0 0 chr13 80818545 80818842 -38926056 - AluSg SINE Alu -13 297 1 1090 312 123 28 chr13 80819418 80820101 -38924797 + L3 LINE CR1 724 1471 -106 2898 9 0 0 chr13 80820101 80820416 -38924482 + AluYb8 SINE Alu 1 315 -3 476 309 96 21 chr13 80820756 80820944 -38923954 - MIR SINE MIR -49 213 12 26 0 0 0 chr13 80821139 80821165 -38923733 + AT_rich Low_complexity Low_complexity 1 26 0 1111 275 57 54 chr13 80821734 80822232 -38922666 + L2 LINE L2 2745 3240 -73 220 394 31 16 chr13 80822814 80823007 -38921891 - L2 LINE L2 -968 2346 2151 451 206 42 26 chr13 80823129 80823318 -38921580 - L1MEc LINE L1 -2885 4072 3881 235 291 67 73 chr13 80823522 80823701 -38921197 - MLT1H LTR MaLR 0 549 372 360 311 106 63 chr13 80824355 80824722 -38920176 - L1MEc LINE L1 -3939 3199 2817 396 0 0 0 chr13 80824780 80824824 -38920074 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2109 114 0 0 chr13 80824825 80825105 -38919793 - AluSx SINE Alu -32 280 1 305 269 29 83 chr13 80825314 80825556 -38919342 - L1MEc LINE L1 -4901 2046 1818 258 294 0 0 chr13 80825575 80825677 -38919221 + T-rich Low_complexity Low_complexity 1 102 0 22 0 0 0 chr13 80826649 80826671 -38918227 + AT_rich Low_complexity Low_complexity 1 22 0 640 200 38 65 chr13 80828863 80829048 -38915850 + MIR SINE MIR 70 249 -13 255 307 164 37 chr13 80829110 80829299 -38915599 - MIR SINE MIR -49 213 1 288 0 0 0 chr13 80829340 80829372 -38915526 + (CA)n Simple_repeat Simple_repeat 1 32 0 10415 56 1 0 chr13 80830875 80832962 -38911936 - L1PA5 LINE L1 -1 6153 4066 511 277 57 44 chr13 80833203 80833521 -38911377 + L1P LINE L1 3634 3955 -2191 22 35 0 0 chr13 80833776 80833805 -38911093 + AT_rich Low_complexity Low_complexity 1 29 0 1075 99 49 19 chr13 80833941 80834103 -38910795 + AluSg/x SINE Alu 85 251 -61 880 282 69 38 chr13 80834111 80834473 -38910425 + L1MC4a LINE L1 5438 5816 -1992 1393 205 0 54 chr13 80834473 80834790 -38910108 + AluJo SINE Alu 1 300 -2 880 282 69 38 chr13 80834790 80834845 -38910053 + L1MC4a LINE L1 5816 5868 -1940 348 240 23 31 chr13 80835121 80835250 -38909648 + HAL1 LINE L1 2236 2363 -144 812 239 96 10 chr13 80836300 80836509 -38908389 + MER39 LTR ERV1 2 228 -479 * 1721 188 39 21 chr13 80836506 80836890 -38908008 + MER39 LTR ERV1 175 707 0 467 191 135 21 chr13 80837745 80837886 -38907012 - L1MB8 LINE L1 -1 6177 6021 1147 159 170 38 chr13 80837914 80838203 -38906695 - L1MEc LINE L1 -5516 1343 1017 1619 124 4 0 chr13 80838203 80838445 -38906453 - pTR5 LTR ERV1 -2040 398 156 2101 133 3 13 chr13 80838504 80838819 -38906079 - AluSx SINE Alu 0 312 1 2000 263 73 70 chr13 80838819 80839686 -38905212 - L1MEc LINE L1 -5884 975 107 4301 66 20 47 chr13 80839757 80840840 -38904058 - MER11A LTR ERVK 0 1266 1 10629 74 5 5 chr13 80840840 80842205 -38902693 - HERVK11 LTR ERVK 0 7953 6589 7036 202 158 19 chr13 80842208 80842289 -38902609 - L1PBa LINE L1 -4535 2328 2260 5105 109 30 8 chr13 80842289 80843052 -38901846 + LTR17 LTR ERV1 1 780 0 7036 202 158 19 chr13 80843052 80844900 -38899998 - L1PBa LINE L1 -4603 2260 132 2518 119 34 3 chr13 80845089 80845475 -38899423 + MER48 LTR ERV1 1 398 0 1662 342 119 31 chr13 80845688 80847111 -38897787 + L2 LINE L2 1698 3250 -63 201 338 13 0 chr13 80847223 80847300 -38897598 + L2 LINE L2 2454 2531 -783 2326 109 29 0 chr13 80847316 80847663 -38897235 - L1PA11 LINE L1 -2 6172 5816 3843 85 119 5 chr13 80847664 80848251 -38896647 - L1PA10 LINE L1 -11 6157 5504 225 0 0 0 chr13 80848338 80848363 -38896535 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1868 209 4 22 chr13 80848708 80848981 -38895917 + MER89 LTR ERV1 1 277 -282 2987 172 60 81 chr13 80848981 80849824 -38895074 + LTR1B LTR ERV1 1 826 0 1868 209 4 22 chr13 80849824 80849860 -38895038 + MER89 LTR ERV1 277 312 -247 2392 85 3 0 chr13 80849860 80850165 -38894733 - AluSg SINE Alu -3 307 2 1868 209 4 22 chr13 80850165 80850321 -38894577 + MER89 LTR ERV1 312 557 -2 362 119 30 0 chr13 80853416 80853483 -38891415 + L1MC1 LINE L1 6264 6332 -1 29 47 0 0 chr13 80855110 80855153 -38889745 + AT_rich Low_complexity Low_complexity 1 43 0 212 356 89 0 chr13 80855182 80855283 -38889615 - MIR SINE MIR -75 187 78 2621 122 24 16 chr13 80855318 80855743 -38889155 - MSTA LTR MaLR 0 428 1 325 360 40 17 chr13 80855920 80856095 -38888803 + L2 LINE L2 2025 2203 -1111 1817 131 101 15 chr13 80856103 80856440 -38888458 + THE1C LTR MaLR 10 375 0 768 261 10 75 chr13 80856440 80856746 -38888152 + L2 LINE L2 2199 2484 -830 8291 99 7 0 chr13 80857344 80858536 -38886362 - L1PA8 LINE L1 -1381 4765 3566 6818 73 3 3 chr13 80858536 80859908 -38884990 + L1PA8 LINE L1 4788 6164 -8 21 0 0 0 chr13 80859908 80859929 -38884969 + AT_rich Low_complexity Low_complexity 1 21 0 528 304 87 43 chr13 80859941 80860408 -38884490 + L1ME LINE L1 4954 5442 -748 225 286 65 71 chr13 80860532 80860763 -38884135 + L1ME LINE L1 5528 5758 -363 2850 0 0 0 chr13 80860763 80861067 -38883831 + AluYa5 SINE Alu 1 304 -7 225 286 65 71 chr13 80861067 80861129 -38883769 + L1ME LINE L1 5758 5819 -302 254 333 219 2 chr13 80862188 80862575 -38882323 + L2 LINE L2 2637 3120 -193 12048 161 31 57 chr13 80862611 80863396 -38881502 - L1MA8 LINE L1 -16 6275 5471 1589 34 5 24 chr13 80863396 80863604 -38881294 - L1PA4 LINE L1 -1 6154 5951 12048 161 31 57 chr13 80863604 80863899 -38880999 - L1MA8 LINE L1 -820 5471 5170 856 230 0 17 chr13 80863899 80864077 -38880821 - FAM SINE Alu 0 175 1 12048 161 31 57 chr13 80864077 80865295 -38879603 - L1MA8 LINE L1 -1121 5170 3922 2972 54 0 0 chr13 80865295 80865663 -38879235 + L1PA6 LINE L1 5784 6154 0 12048 161 31 57 chr13 80865663 80866971 -38877927 - L1MA8 LINE L1 -2369 3922 2599 210 308 189 25 chr13 80866974 80867133 -38877765 + L2 LINE L2 3111 3295 -18 22 35 0 0 chr13 80868661 80868690 -38876208 + AT_rich Low_complexity Low_complexity 1 29 0 432 311 99 40 chr13 80868876 80869098 -38875800 - MIR SINE MIR -3 259 25 214 109 0 87 chr13 80869339 80869385 -38875513 + (TTCCC)n Simple_repeat Simple_repeat 4 45 0 1021 275 66 56 chr13 80869905 80870389 -38874509 + MLT1J LTR MaLR 3 491 -20 200 355 59 33 chr13 80870472 80870624 -38874274 - MIR SINE MIR -67 195 40 369 304 103 15 chr13 80870700 80870904 -38873994 + MIR SINE MIR 40 261 -1 295 357 31 16 chr13 80870947 80871076 -38873822 + L2 LINE L2 3134 3264 -8 22 70 0 0 chr13 80871590 80871633 -38873265 + AT_rich Low_complexity Low_complexity 1 43 0 6711 181 30 11 chr13 80872997 80873364 -38871534 + L1MA2 LINE L1 4033 4392 -1912 180 0 0 0 chr13 80873364 80873384 -38871514 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 6711 181 30 11 chr13 80873384 80875231 -38869667 + L1MA2 LINE L1 4392 6294 -10 32 0 0 0 chr13 80876135 80876167 -38868731 + AT_rich Low_complexity Low_complexity 1 32 0 269 286 62 45 chr13 80876585 80876697 -38868201 + L2 LINE L2 3158 3271 -1 2029 135 26 0 chr13 80877261 80877565 -38867333 + AluSx SINE Alu 1 312 0 763 179 179 6 chr13 80878128 80878296 -38866602 + L1MDa LINE L1 26 222 -6318 546 148 59 30 chr13 80878293 80878428 -38866470 + L1MD1 LINE L1 5908 6046 -196 * 2323 187 37 67 chr13 80878428 80878453 -38866445 + MLT2B2 LTR ERVL 1 25 -495 7846 17 0 0 chr13 80878453 80879767 -38865131 + L1PA2 LINE L1 4842 6155 0 2323 187 37 67 chr13 80879767 80880277 -38864621 + MLT2B2 LTR ERVL 25 520 0 884 184 5 15 chr13 80880277 80880483 -38864415 + L1MD1 LINE L1 6039 6242 0 10856 212 22 8 chr13 80880494 80882966 -38861932 + L1P LINE L1 2561 5066 -1080 261 180 0 0 chr13 80883516 80883566 -38861332 + L1MA9 LINE L1 6225 6274 -38 22 35 0 0 chr13 80883566 80883595 -38861303 + AT_rich Low_complexity Low_complexity 1 29 0 655 301 40 22 chr13 80883813 80884039 -38860859 + MIR SINE MIR 32 261 -1 496 258 167 29 chr13 80884118 80884358 -38860540 + MLT1J1 LTR MaLR 20 292 -154 2592 11 0 0 chr13 80885389 80885673 -38859225 - AluYb8 SINE Alu 0 318 35 304 289 57 6 chr13 80886563 80886722 -38858176 + L1ME LINE L1 5634 5800 -321 1064 149 20 0 chr13 80888137 80888332 -38856566 + L1MA2 LINE L1 6106 6304 0 391 285 42 24 chr13 80888511 80888676 -38856222 + HAL1b LINE L1 301 468 -880 2332 237 37 46 chr13 80890316 80890970 -38853928 - MER21-int LTR ERV1 -44 4147 3500 232 303 66 20 chr13 80890971 80891169 -38853729 + HAL1b LINE L1 466 672 -676 241 200 0 36 chr13 80891173 80891228 -38853670 + HAL1b LINE L1 438 490 -858 180 111 0 0 chr13 80891323 80891350 -38853548 + (A)n Simple_repeat Simple_repeat 1 27 0 557 235 23 45 chr13 80891356 80891577 -38853321 + HAL1b LINE L1 615 830 -518 424 242 24 40 chr13 80891605 80891671 -38853227 + MIR SINE MIR 6 71 -191 2324 60 0 0 chr13 80891671 80891970 -38852928 - L1PA13 LINE L1 -2 6161 5863 424 242 24 40 chr13 80891970 80892027 -38852871 + MIR SINE MIR 71 127 -135 1537 285 141 8 chr13 80892102 80892794 -38852104 + L2 LINE L2 2276 3052 -261 19685 159 44 14 chr13 80892797 80897446 -38847452 - L1MA3 LINE L1 0 7724 3216 2216 113 3 0 chr13 80897446 80897747 -38847151 - AluSp SINE Alu -11 302 1 19685 159 44 14 chr13 80897747 80900377 -38844521 - L1MA3 LINE L1 -4508 3216 217 2186 122 35 22 chr13 80900377 80900747 -38844151 - THE1C LTR MaLR 0 375 1 19685 159 44 14 chr13 80900747 80900823 -38844075 - L1MA3 LINE L1 -7507 217 145 811 151 48 18 chr13 80900933 80901099 -38843799 - L1MA3 LINE L1 -7382 183 13 385 297 55 35 chr13 80901296 80901328 -38843570 + L2 LINE L2 3162 3192 -121 186 43 0 0 chr13 80901328 80901351 -38843547 + (CA)n Simple_repeat Simple_repeat 1 23 0 385 297 55 35 chr13 80901351 80901463 -38843435 + L2 LINE L2 3192 3309 -4 276 275 37 64 chr13 80901576 80901685 -38843213 - MIR SINE MIR -113 149 44 288 297 20 10 chr13 80902816 80902917 -38841981 + CT-rich Low_complexity Low_complexity 1 102 0 272 179 9 57 chr13 80902933 80903039 -38841859 + CT-rich Low_complexity Low_complexity 2 102 0 613 252 0 0 chr13 80903425 80903560 -38841338 + FLAM_A SINE Alu 5 139 -3 2070 137 32 24 chr13 80903673 80904045 -38840853 - THE1C LTR MaLR 0 375 1 3365 144 18 26 chr13 80905868 80906473 -38838425 - MER4A LTR ERV1 0 600 1 430 326 33 32 chr13 80906502 80906692 -38838206 - MIR SINE MIR -38 224 35 208 317 58 29 chr13 80906816 80906920 -38837978 - L2 LINE L2 -13 3300 3194 1467 216 143 5 chr13 80907265 80907677 -38837221 + MLT2B1 LTR ERVL 1 469 -51 273 171 0 7 chr13 80907720 80907789 -38837109 + MLT2B1 LTR ERVL 446 517 -3 1077 157 30 45 chr13 80908167 80908365 -38836533 - MLT1A1 LTR MaLR 0 365 171 721 171 26 26 chr13 80908379 80908531 -38836367 - LTR9 LTR ERV1 0 612 461 2463 146 51 87 chr13 80908536 80908614 -38836284 - LTR9 LTR ERV1 -103 509 430 1885 100 41 11 chr13 80908614 80908917 -38835981 - AluSq SINE Alu 0 317 7 2463 146 51 87 chr13 80908917 80909365 -38835533 - LTR9 LTR ERV1 -182 430 1 788 207 0 0 chr13 80909373 80909523 -38835375 - MLT1A1 LTR MaLR -215 150 1 235 274 32 42 chr13 80909575 80909670 -38835228 - HAL1 LINE L1 -110 2397 2304 347 266 64 0 chr13 80910432 80910526 -38834372 - HAL1 LINE L1 -1577 930 831 2333 108 70 41 chr13 80911570 80911730 -38833168 - MSTA LTR MaLR 0 428 274 261 0 0 0 chr13 80911730 80911759 -38833139 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 2333 108 70 41 chr13 80911759 80912014 -38832884 - MSTA LTR MaLR -154 274 1 388 354 65 4 chr13 80912259 80912488 -38832410 - L3 LINE CR1 -801 776 534 214 214 71 0 chr13 80913670 80913726 -38831172 + GA-rich Low_complexity Low_complexity 3 62 0 229 167 62 0 chr13 80914661 80914709 -38830189 - MADE1 DNA Mariner -29 51 1 24 0 0 0 chr13 80914709 80914733 -38830165 + AT_rich Low_complexity Low_complexity 1 24 0 306 330 35 9 chr13 80914883 80914998 -38829900 - MIR3 SINE MIR -34 174 57 2252 95 7 0 chr13 80915931 80916226 -38828672 + AluSp SINE Alu 4 300 -13 1815 161 3 20 chr13 80918254 80918558 -38826340 - AluJo SINE Alu -13 299 1 246 230 70 40 chr13 80918706 80918806 -38826092 + MIR3 SINE MIR 88 190 -18 248 231 39 13 chr13 80919170 80919248 -38825650 + L1MEd LINE L1 12 91 -6028 446 0 0 18 chr13 80919448 80919503 -38825395 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 802 145 12 12 chr13 80919523 80919689 -38825209 + CT-rich Low_complexity Low_complexity 3 168 0 821 55 0 9 chr13 80919691 80919800 -38825098 - AluSp/q SINE Alu -1 312 205 235 309 97 73 chr13 80919895 80920154 -38824744 + L1MEd LINE L1 500 764 -5355 261 0 0 0 chr13 80920854 80920883 -38824015 + (A)n Simple_repeat Simple_repeat 1 29 0 1197 221 0 19 chr13 80922129 80922253 -38822645 - AluJb SINE Alu -54 258 133 281 26 26 0 chr13 80922253 80922291 -38822607 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 1197 221 0 19 chr13 80922291 80922429 -38822469 - AluJb SINE Alu -179 133 1 250 340 38 9 chr13 80922579 80922685 -38822213 - MIR SINE MIR -102 160 52 1043 148 128 0 chr13 80923182 80923385 -38821513 - L1MD3 LINE L1 -14 7981 7753 21 0 0 0 chr13 80924111 80924132 -38820766 + AT_rich Low_complexity Low_complexity 1 21 0 1771 177 0 35 chr13 80924934 80925245 -38819653 - AluJb SINE Alu -12 300 1 2028 108 0 34 chr13 80925475 80925771 -38819127 - AluSg SINE Alu -9 301 16 25 0 0 0 chr13 80926060 80926085 -38818813 + AT_rich Low_complexity Low_complexity 1 25 0 1645 128 117 8 chr13 80926549 80926814 -38818084 + AluSg1 SINE Alu 3 296 -13 272 348 112 45 chr13 80926941 80927208 -38817690 - L2 LINE L2 -468 2846 2562 284 343 68 7 chr13 80927991 80928137 -38816761 + MIR SINE MIR 37 191 -71 328 303 66 0 chr13 80929823 80929945 -38814953 + MER94 DNA DNA 5 134 0 425 294 10 0 chr13 80930808 80930910 -38813988 + MIR3 SINE MIR 61 163 -45 21 0 0 0 chr13 80931274 80931295 -38813603 + AT_rich Low_complexity Low_complexity 1 21 0 271 308 50 35 chr13 80931341 80931454 -38813444 + MIR SINE MIR 54 167 -63 381 327 35 50 chr13 80933451 80933711 -38811187 + L1MC/D LINE L1 4788 5043 -1103 1221 80 0 6 chr13 80933711 80933886 -38811012 - L1P4 LINE L1 -685 5483 5310 319 71 0 0 chr13 80933885 80933927 -38810971 + L1PA13 LINE L1 6093 6134 -29 * 1015 51 9 7 chr13 80933927 80934246 -38810652 + MLT2A1 LTR ERVL 1 453 0 769 254 53 42 chr13 80934601 80934865 -38810033 + L1MC/D LINE L1 5333 5599 -2209 21 0 0 0 chr13 80934879 80934900 -38809998 + AT_rich Low_complexity Low_complexity 1 21 0 189 319 53 11 chr13 80935597 80935691 -38809207 + L2 LINE L2 2444 2541 -773 5693 149 20 2 chr13 80935732 80936866 -38808032 + L1PA16 LINE L1 5008 6162 -4 1157 183 9 9 chr13 80936918 80937142 -38807756 - Tigger1 DNA MER2_type -2123 295 72 6565 13 0 1 chr13 80937174 80937925 -38806973 - L1PA3 LINE L1 -1 6154 5405 1146 171 34 24 chr13 80937925 80938278 -38806620 - MSTA LTR MaLR -4 424 1 378 236 182 25 chr13 80938451 80938654 -38806244 - L1MC4a LINE L1 -1866 5942 5708 187 364 79 66 chr13 80939152 80939608 -38805290 - L2 LINE L2 -4 3268 2807 1951 147 3 19 chr13 80939803 80940117 -38804781 + AluSx SINE Alu 1 309 -3 24 0 0 0 chr13 80940351 80940375 -38804523 + AT_rich Low_complexity Low_complexity 1 24 0 951 240 77 0 chr13 80940450 80940658 -38804240 - MER58A DNA MER1_type 0 224 1 2794 239 65 19 chr13 80940780 80941331 -38803567 - L1ME1 LINE L1 -5 6161 5552 7351 30 9 0 chr13 80941331 80942546 -38802352 - L1PA4 LINE L1 0 6155 4935 2794 239 65 19 chr13 80942546 80942940 -38801958 - L1ME1 LINE L1 -614 5552 5178 335 105 18 0 chr13 80946278 80946335 -38798563 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1960 121 169 19 chr13 80947756 80947944 -38796954 - MSTA LTR MaLR 0 428 270 180 0 0 0 chr13 80947944 80947964 -38796934 + (GA)n Simple_repeat Simple_repeat 1 20 0 1960 121 169 19 chr13 80947964 80948147 -38796751 - MSTA LTR MaLR -158 270 1 339 314 113 46 chr13 80948233 80948427 -38796471 - L1ME3A LINE L1 -301 5869 5663 495 266 68 54 chr13 80948521 80948753 -38796145 + MLT1J1 LTR MaLR 26 255 -195 1348 212 34 10 chr13 80948753 80949050 -38795848 - AluJo SINE Alu -7 305 2 495 266 68 54 chr13 80949050 80949113 -38795785 + MLT1J1 LTR MaLR 255 316 -134 695 250 78 39 chr13 80949247 80949707 -38795191 - L1ME3A LINE L1 -668 5498 5023 553 243 15 15 chr13 80949775 80949911 -38794987 - AluJo SINE Alu -162 150 15 540 292 112 39 chr13 80949994 80950045 -38794853 - L1ME3A LINE L1 -1697 4449 4403 1606 151 43 0 chr13 80950045 80950344 -38794554 - L1MA9 LINE L1 0 6312 6001 540 292 112 39 chr13 80950344 80951482 -38793416 - L1ME3A LINE L1 -1743 4403 3095 6085 181 92 76 chr13 80951776 80953330 -38791568 - MER52A LTR ERV1 0 1755 177 1025 266 85 27 chr13 80953365 80953696 -38791202 + LTR40b LTR ERVL 109 458 -4 28 0 0 0 chr13 80953907 80953935 -38790963 + AT_rich Low_complexity Low_complexity 1 28 0 2035 119 17 0 chr13 80956312 80956607 -38788291 - AluSq SINE Alu -13 300 1 1369 166 115 14 chr13 80957336 80957614 -38787284 + AluSg SINE Alu 1 306 -4 1100 250 66 47 chr13 80957623 80958031 -38786867 + MLT1H LTR MaLR 74 489 -60 395 19 19 0 chr13 80958044 80958096 -38786802 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 209 373 71 12 chr13 80958717 80958886 -38786012 + L3 LINE CR1 1377 1555 -22 553 229 98 121 chr13 80959272 80959587 -38785311 - MLT1A1 LTR MaLR -55 310 3 183 42 0 0 chr13 80959809 80959833 -38785065 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 5367 104 22 0 chr13 80959833 80960613 -38784285 - L1PA13 LINE L1 -4 6159 5363 50 71 0 0 chr13 80960754 80960853 -38784045 + AT_rich Low_complexity Low_complexity 1 99 0 620 298 66 91 chr13 80960937 80961376 -38783522 + LTR16B LTR ERVL 37 464 0 6569 171 10 29 chr13 80961513 80962394 -38782504 - L1PB4 LINE L1 -3 6153 5257 326 96 77 0 chr13 80962394 80962446 -38782452 + MADE1 DNA Mariner 1 56 -24 6569 171 10 29 chr13 80962446 80963783 -38781115 - L1PB4 LINE L1 -899 5257 3935 4453 192 43 2 chr13 80963783 80964651 -38780247 - Tigger6a DNA MER2_type -180 903 1 1219 163 65 22 chr13 80964722 80964845 -38780053 + L1MA10 LINE L1 6039 6155 -179 351 44 0 0 chr13 80964845 80964890 -38780008 + (CA)n Simple_repeat Simple_repeat 2 46 0 1219 163 65 22 chr13 80964890 80965043 -38779855 + L1MA10 LINE L1 6155 6327 -7 309 343 79 74 chr13 80965295 80965988 -38778910 - L2 LINE L2 -530 2784 2088 482 242 194 61 chr13 80968097 80968262 -38776636 + MLT1I LTR MaLR 263 408 -1 205 184 0 0 chr13 80968642 80968680 -38776218 + (CAATT)n Simple_repeat Simple_repeat 5 42 0 241 234 90 27 chr13 80968881 80968992 -38775906 - L1ME LINE L1 -299 5822 5705 592 313 126 30 chr13 80969337 80969733 -38775165 - HAL1 LINE L1 -941 1566 1133 256 371 48 0 chr13 80972584 80972689 -38772209 + L2 LINE L2 3149 3258 -14 290 388 112 9 chr13 80973297 80973521 -38771377 - L2 LINE L2 -198 3074 2828 4109 189 55 18 chr13 80974296 80975118 -38769780 - MER21B LTR ERV1 -11 852 1 710 353 46 10 chr13 80975123 80975517 -38769381 - HERVL LTR ERVL -2825 2939 2532 682 370 60 15 chr13 80975622 80976217 -38768681 - HERVL LTR ERVL -3384 2380 1724 281 318 156 11 chr13 80976984 80977163 -38767735 + L1MEc LINE L1 374 578 -5985 354 244 59 1 chr13 80977199 80977339 -38767559 + L1MEc LINE L1 1368 1597 -4785 460 317 70 13 chr13 80977732 80977959 -38766939 + MIR SINE MIR 18 257 -5 1590 152 36 56 chr13 80977962 80978265 -38766633 + AluJb SINE Alu 1 297 -15 256 164 45 0 chr13 80979179 80979246 -38765652 + L1ME4a LINE L1 6052 6121 0 355 267 67 27 chr13 80979897 80980047 -38764851 - MIR SINE MIR -8 254 99 531 313 58 14 chr13 80980337 80980545 -38764353 - MIR SINE MIR 0 262 46 303 282 46 23 chr13 80980672 80980803 -38764095 - MER94 DNA DNA 0 134 1 27 0 0 0 chr13 80982003 80982030 -38762868 + AT_rich Low_complexity Low_complexity 1 27 0 182 267 0 152 chr13 80983060 80983165 -38761733 + MIR3 SINE MIR 109 197 -11 479 261 37 15 chr13 80986172 80986306 -38758592 - MER103 DNA DNA -2 164 28 658 177 74 86 chr13 80986424 80986599 -38758299 + MER5A DNA MER1_type 1 173 -16 261 301 65 0 chr13 80987687 80987780 -38757118 - MLT1I LTR MaLR -6 403 305 21 57 0 0 chr13 80987882 80987917 -38756981 + AT_rich Low_complexity Low_complexity 1 35 0 2110 79 4 11 chr13 80988281 80988558 -38756340 - AluSc SINE Alu -16 293 19 205 357 7 26 chr13 80988728 80988882 -38756016 + CT-rich Low_complexity Low_complexity 5 155 0 1577 139 4 0 chr13 80989663 80989907 -38754991 - pTR5 LTR ERV1 -2038 400 156 2065 148 3 0 chr13 80989971 80990281 -38754617 - AluSx SINE Alu -1 311 1 1127 269 94 104 chr13 80990281 80991038 -38753860 - L1M4b LINE L1 -5884 975 227 22 0 0 0 chr13 80991433 80991455 -38753443 + AT_rich Low_complexity Low_complexity 1 22 0 2322 146 26 16 chr13 80991620 80992044 -38752854 - MSTA LTR MaLR 0 428 1 263 331 50 22 chr13 80992221 80992360 -38752538 + L2 LINE L2 2025 2167 -1147 774 167 119 12 chr13 80992404 80992572 -38752326 + THE1C LTR MaLR 10 195 -180 481 246 99 7 chr13 80994024 80994166 -38750732 + MLT1I LTR MaLR 254 408 -1 205 184 0 0 chr13 80994546 80994584 -38750314 + (CAATT)n Simple_repeat Simple_repeat 5 42 0 231 234 90 27 chr13 80994785 80994896 -38750002 - L1ME LINE L1 -299 5822 5705 582 313 126 30 chr13 80995241 80995637 -38749261 - HAL1 LINE L1 -941 1566 1133 256 371 48 0 chr13 80998489 80998594 -38746304 + L2 LINE L2 3149 3258 -14 290 388 112 9 chr13 80999202 80999426 -38745472 - L2 LINE L2 -198 3074 2828 354 244 59 1 chr13 81000236 81000376 -38744522 + L1MDa LINE L1 1368 1597 -4785 474 313 70 13 chr13 81000769 81000996 -38743902 + MIR SINE MIR 18 257 -5 1590 152 36 56 chr13 81000999 81001302 -38743596 + AluJb SINE Alu 1 297 -15 256 164 45 0 chr13 81002216 81002283 -38742615 + L1ME4a LINE L1 6052 6121 0 355 267 67 27 chr13 81002934 81003084 -38741814 - MIR SINE MIR -8 254 99 531 313 58 14 chr13 81003374 81003582 -38741316 - MIR SINE MIR 0 262 46 303 282 46 23 chr13 81003709 81003840 -38741058 - MER94 DNA DNA 0 134 1 464 243 54 0 chr13 81004720 81004831 -38740067 + L2 LINE L2 3197 3313 0 730 197 0 0 chr13 81005039 81005171 -38739727 - FLAM_A SINE Alu -1 132 1 350 290 93 31 chr13 81005297 81005459 -38739439 + MER20B DNA MER1_type 3 174 -609 638 164 0 0 chr13 81005472 81005582 -38739316 - AluSg/x SINE Alu -7 303 194 315 265 111 26 chr13 81005687 81005804 -38739094 + MIR SINE MIR 34 160 -102 266 247 12 25 chr13 81005972 81006053 -38738845 - MLT1K LTR MaLR 0 588 509 237 228 152 0 chr13 81006061 81006140 -38738758 - MLT1K LTR MaLR 0 588 498 181 326 0 0 chr13 81006185 81006234 -38738664 + L2 LINE L2 3195 3243 -70 241 346 8 46 chr13 81006758 81006888 -38738010 - L2 LINE L2 -15 3298 3174 2494 49 3 13 chr13 81007968 81008276 -38736622 + AluY SINE Alu 1 305 -6 1493 320 113 8 chr13 81008634 81009446 -38735452 + L2 LINE L2 2397 3299 -14 2277 77 0 17 chr13 81009553 81009853 -38735045 - AluY SINE Alu -16 295 1 22 0 0 0 chr13 81009934 81009956 -38734942 + AT_rich Low_complexity Low_complexity 1 22 0 222 203 89 38 chr13 81009979 81010058 -38734840 + MIR SINE MIR 102 184 -78 190 330 0 80 chr13 81011979 81012079 -38732819 - L2 LINE L2 -1 3312 3221 21 0 0 0 chr13 81013844 81013865 -38731033 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr13 81016542 81016588 -38728310 + AT_rich Low_complexity Low_complexity 1 46 0 526 272 95 19 chr13 81017819 81017892 -38727006 + MER5B DNA MER1_type 9 75 -103 200 59 29 0 chr13 81017892 81017926 -38726972 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 526 272 95 19 chr13 81017926 81018010 -38726888 + MER5B DNA MER1_type 75 178 0 1752 203 83 7 chr13 81018109 81018543 -38726355 - Charlie1b DNA MER1_type 0 523 57 1788 189 81 11 chr13 81019192 81019562 -38725336 + MSTD LTR MaLR 1 396 0 608 316 15 15 chr13 81019769 81019975 -38724923 - L3 LINE CR1 -769 808 603 201 74 0 0 chr13 81020494 81020521 -38724377 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr13 81020894 81020919 -38723979 + AT_rich Low_complexity Low_complexity 1 25 0 2461 73 0 0 chr13 81020929 81021232 -38723666 + AluY SINE Alu 1 303 -8 639 245 134 58 chr13 81021606 81022102 -38722796 - MLT1F1 LTR MaLR -11 556 1 705 276 190 15 chr13 81022601 81023174 -38721724 + L1ME3A LINE L1 4885 5575 -589 246 128 0 0 chr13 81023186 81023225 -38721673 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr13 81023225 81023246 -38721652 + AT_rich Low_complexity Low_complexity 1 21 0 796 239 60 106 chr13 81023312 81023444 -38721454 + L1ME3A LINE L1 5782 5918 -252 621 27 0 0 chr13 81023444 81023519 -38721379 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 796 239 60 106 chr13 81023519 81023784 -38721114 + L1ME3A LINE L1 5918 6161 -9 291 312 26 0 chr13 81025618 81025695 -38719203 - L2 LINE L2 -5 3267 3189 185 397 83 0 chr13 81026346 81026467 -38718431 + MIR3 SINE MIR 60 190 -18 5202 134 14 0 chr13 81028331 81029137 -38715761 + L1PA16 LINE L1 5339 6155 -11 2169 93 0 0 chr13 81029827 81030130 -38714768 - AluSc SINE Alu 0 303 1 346 336 24 0 chr13 81030323 81030448 -38714450 - MER5A DNA MER1_type -3 186 59 226 292 15 0 chr13 81031473 81031538 -38713360 - L2 LINE L2 0 3313 3248 269 313 52 21 chr13 81031736 81031832 -38713066 + MIR SINE MIR 2 100 -162 820 135 0 0 chr13 81032391 81032524 -38712374 + L1PB2 LINE L1 6017 6149 -2 234 344 66 25 chr13 81032576 81032698 -38712200 + L2 LINE L2 3139 3265 -7 4526 164 37 8 chr13 81032809 81033664 -38711234 - L1PB4 LINE L1 0 6156 5277 270 360 120 36 chr13 81033719 81034492 -38710406 + L2 LINE L2 2030 2867 -447 279 338 26 45 chr13 81034624 81034778 -38710120 - MIR SINE MIR -41 221 71 307 327 44 0 chr13 81035473 81035586 -38709312 + L2 LINE L2 3193 3310 -3 302 374 31 49 chr13 81036046 81036396 -38708502 + L1MDa LINE L1 5 348 -6192 930 224 109 15 chr13 81037058 81037386 -38707512 + L1MDa LINE L1 1015 1350 -5193 264 130 0 0 chr13 81037476 81037522 -38707376 + (CA)n Simple_repeat Simple_repeat 2 47 0 384 138 0 0 chr13 81040493 81040558 -38704340 + (CA)n Simple_repeat Simple_repeat 2 66 0 22 0 0 0 chr13 81041576 81041598 -38703300 + AT_rich Low_complexity Low_complexity 1 22 0 776 146 55 12 chr13 81042487 81042651 -38702247 - L1MA4 LINE L1 -10 6290 6120 180 295 13 135 chr13 81042846 81043002 -38701896 - L2 LINE L2 -198 3074 2938 508 250 119 6 chr13 81043933 81044093 -38700805 - MER45A DNA AcHobo 0 178 1 180 295 82 16 chr13 81045580 81045641 -38699257 - L2 LINE L2 -216 3056 2992 209 161 0 0 chr13 81045972 81046003 -38698895 + (TGG)n Simple_repeat Simple_repeat 2 32 0 32 57 0 0 chr13 81046217 81046270 -38698628 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr13 81047589 81047611 -38697287 + AT_rich Low_complexity Low_complexity 1 22 0 564 118 0 0 chr13 81049792 81049885 -38695013 - L1MA8 LINE L1 -6 6285 6193 180 146 24 49 chr13 81050003 81050044 -38694854 + L3 LINE CR1 899 938 -639 1403 189 108 46 chr13 81050190 81050561 -38694337 - MLT2C1 LTR ERVL -3 394 1 936 251 31 31 chr13 81051018 81051337 -38693561 - L1MA9 LINE L1 -37 6275 5957 1464 170 35 0 chr13 81051365 81051669 -38693229 + Tigger7 DNA MER2_type 1 2581 -6 316 238 0 0 chr13 81052371 81052434 -38692464 - MIR SINE MIR -61 147 85 23 33 0 0 chr13 81052799 81052829 -38692069 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 81054344 81054365 -38690533 + (T)n Simple_repeat Simple_repeat 1 21 0 942 110 0 0 chr13 81054365 81054492 -38690406 - AluSq SINE Alu -58 255 129 345 221 0 0 chr13 81054492 81054596 -38690302 + (TA)n Simple_repeat Simple_repeat 1 104 0 316 232 61 0 chr13 81054661 81054743 -38690155 + L1MC4 LINE L1 6617 6703 -1339 403 67 0 56 chr13 81054747 81054837 -38690061 + (TA)n Simple_repeat Simple_repeat 1 85 0 235 120 0 20 chr13 81054837 81054887 -38690011 + LTR66 LTR ERVL 399 447 -163 225 225 113 86 chr13 81054913 81055064 -38689834 - HAL1b LINE L1 -449 899 745 237 261 0 0 chr13 81055501 81055547 -38689351 - HAL1 LINE L1 -643 1864 1819 1495 268 84 29 chr13 81055753 81056312 -38688586 - MLT1E2 LTR MaLR -24 602 13 26 74 0 0 chr13 81058223 81058277 -38686621 + AT_rich Low_complexity Low_complexity 1 54 0 2837 256 81 10 chr13 81059554 81060558 -38684340 + L1M4 LINE L1 3093 4167 -1979 1968 188 11 6 chr13 81060602 81060958 -38683940 + MLT1A1 LTR MaLR 8 365 0 680 301 78 57 chr13 81060959 81061736 -38683162 + L1M4 LINE L1 3003 3800 -2346 1120 262 58 25 chr13 81062366 81062728 -38682170 + MLT1A2 LTR MaLR 1 374 0 1536 176 115 3 chr13 81063386 81063699 -38681199 + MER7A DNA MER2_type 1 346 0 802 191 0 13 chr13 81064137 81064289 -38680609 - MER6 DNA MER2_type 0 865 -5 26 0 0 0 chr13 81064389 81064415 -38680483 + AT_rich Low_complexity Low_complexity 1 26 0 242 367 100 33 chr13 81066250 81066370 -38678528 + L2 LINE L2 3096 3223 -49 714 247 54 0 chr13 81066968 81067134 -38677764 + MER45A DNA AcHobo 2 176 -2 2176 108 0 0 chr13 81067226 81067521 -38677377 + AluSg SINE Alu 1 295 -15 486 171 17 17 chr13 81067657 81067774 -38677124 + L1MA7 LINE L1 6175 6291 0 765 270 119 38 chr13 81067880 81068458 -38676440 - L1MC5 LINE L1 -32 7929 7305 339 136 0 0 chr13 81068502 81068561 -38676337 - L1MA9 LINE L1 0 6312 6254 8101 189 47 8 chr13 81068572 81070308 -38674590 - L1 LINE L1 -1080 6026 4222 761 203 0 13 chr13 81070303 81070456 -38674442 - L1 LINE L1 -4334 2773 2623 * 879 264 65 43 chr13 81070454 81070825 -38674073 - L1 LINE L1 -6535 495 117 274 283 97 21 chr13 81070871 81071016 -38673882 - MLT1J1 LTR MaLR -290 156 1 291 276 26 0 chr13 81071159 81071235 -38673663 + MIR SINE MIR 67 144 -64 25 65 0 0 chr13 81072340 81072386 -38672512 + AT_rich Low_complexity Low_complexity 1 46 0 257 313 30 23 chr13 81074584 81074715 -38670183 - MIR SINE MIR -19 243 112 602 254 0 44 chr13 81074722 81074903 -38669995 - MIR SINE MIR 0 262 90 295 333 94 6 chr13 81075095 81075266 -38669632 - MIR SINE MIR -20 242 57 2061 131 0 29 chr13 81075791 81076097 -38668801 + AluSq SINE Alu 3 299 -14 798 267 78 83 chr13 81077041 81077554 -38667344 - MLT1H LTR MaLR -14 535 18 446 303 71 20 chr13 81077790 81077988 -38666910 - MIR SINE MIR -32 230 23 233 282 86 34 chr13 81078333 81078450 -38666448 - L2 LINE L2 -9 3304 3182 399 214 0 34 chr13 81079251 81079340 -38665558 + MIR3 SINE MIR 121 206 -2 519 301 80 0 chr13 81080951 81081127 -38663771 - MIR SINE MIR -10 252 63 416 272 63 137 chr13 81081930 81082309 -38662589 - L2 LINE L2 -50 3263 2913 7565 27 0 0 chr13 81082502 81083626 -38661272 - L1PA3 LINE L1 -3 6152 5026 9152 25 4 2 chr13 81083626 81084717 -38660181 + L1P LINE L1 3370 4462 -1684 680 43 0 32 chr13 81085630 81085724 -38659174 + L1MA2 LINE L1 5751 5841 -463 * 1977 159 75 63 chr13 81085697 81086188 -38658710 - L1MB7 LINE L1 -145 6039 5543 686 303 99 29 chr13 81086167 81086780 -38658118 - L1MEd LINE L1 -4954 1165 510 * 407 267 111 72 chr13 81086808 81087259 -38657639 - L1MEd LINE L1 -1187 1320 844 5667 171 4 12 chr13 81087659 81088349 -38656549 - L1MA4 LINE L1 -1 6299 5605 1877 148 31 57 chr13 81088349 81088734 -38656164 + THE1C LTR MaLR 1 375 0 5667 171 4 12 chr13 81088734 81089771 -38655127 - L1MA4 LINE L1 -695 5605 4586 301 257 207 36 chr13 81090966 81091106 -38653792 - MIR SINE MIR -31 231 68 192 125 0 0 chr13 81091402 81091434 -38653464 + (T)n Simple_repeat Simple_repeat 1 32 0 321 131 0 0 chr13 81092313 81092374 -38652524 + (TC)n Simple_repeat Simple_repeat 2 62 0 1002 195 25 16 chr13 81093051 81093326 -38651572 - L1P LINE L1 -850 5304 5028 3108 121 68 8 chr13 81093401 81093899 -38650999 - LTR26 LTR ERV1 -75 528 1 1855 182 54 26 chr13 81093901 81094083 -38650815 - L1MC/D LINE L1 -703 5630 5454 2134 73 0 0 chr13 81094083 81094374 -38650524 - AluY SINE Alu 0 314 24 1855 182 54 26 chr13 81094374 81094817 -38650081 - L1MC/D LINE L1 -879 5454 4975 455 181 11 21 chr13 81094830 81094924 -38649974 + MLT2C2 LTR ERVL 121 213 -251 368 150 0 17 chr13 81094919 81094979 -38649919 + MSTC LTR MaLR 305 363 -65 * 2359 58 14 3 chr13 81094982 81095277 -38649621 - AluY SINE Alu -13 298 1 323 319 96 75 chr13 81095348 81095963 -38648935 + L2 LINE L2 2078 2705 -609 425 253 42 6 chr13 81095980 81096146 -38648752 + (TA)n Simple_repeat Simple_repeat 1 172 0 1694 229 108 32 chr13 81096491 81097049 -38647849 + MLT1E2 LTR MaLR 27 626 0 216 279 29 0 chr13 81097095 81097163 -38647735 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 432 255 31 115 chr13 81098330 81098427 -38646471 + MIR SINE MIR 74 149 -113 673 112 0 0 chr13 81098427 81098525 -38646373 - HY3 scRNA scRNA -3 98 1 432 255 31 115 chr13 81098525 81098619 -38646279 + MIR SINE MIR 149 249 -13 265 209 68 0 chr13 81098993 81099067 -38645831 - MIR SINE MIR -63 145 83 25 0 0 0 chr13 81100585 81100610 -38644288 + AT_rich Low_complexity Low_complexity 1 25 0 286 346 150 0 chr13 81103215 81103348 -38641550 - MIR SINE MIR -90 172 20 521 192 135 0 chr13 81104294 81104398 -38640500 + FLAM_A SINE Alu 16 133 -9 208 255 21 0 chr13 81108047 81108094 -38636804 + L2 LINE L2 2582 2629 -685 1647 143 25 45 chr13 81108325 81108639 -38636259 - AluSx SINE Alu -4 308 1 339 25 0 0 chr13 81108768 81108808 -38636090 + (TG)n Simple_repeat Simple_repeat 1 40 0 237 341 71 0 chr13 81108863 81108948 -38635950 + L2 LINE L2 2715 2805 -509 230 155 155 0 chr13 81108991 81109049 -38635849 + L2 LINE L2 2911 2977 -336 300 154 0 0 chr13 81109092 81109144 -38635754 + A-rich Low_complexity Low_complexity 1 52 0 459 292 152 23 chr13 81109144 81109401 -38635497 + L2 LINE L2 3023 3312 -1 399 297 173 10 chr13 81109400 81109602 -38635296 + MIR SINE MIR 21 255 -7 * 224 398 28 0 chr13 81109878 81109986 -38634912 - MIR SINE MIR -63 145 35 441 339 69 5 chr13 81110128 81110346 -38634552 + MIR SINE MIR 15 246 -16 1335 187 18 5 chr13 81110565 81110861 -38634037 - MER2 DNA MER2_type -5 340 2 1926 109 71 24 chr13 81111546 81111840 -38633058 - AluSg SINE Alu -2 308 1 261 302 12 0 chr13 81112038 81112124 -38632774 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 243 215 13 13 chr13 81112238 81112317 -38632581 + (TA)n Simple_repeat Simple_repeat 2 80 0 24 103 0 0 chr13 81112515 81112602 -38632296 + AT_rich Low_complexity Low_complexity 1 87 0 22 0 0 0 chr13 81113427 81113449 -38631449 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 81115385 81115427 -38629471 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr13 81115906 81115949 -38628949 + AT_rich Low_complexity Low_complexity 1 43 0 21 89 0 0 chr13 81116111 81116167 -38628731 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr13 81117991 81118015 -38626883 + AT_rich Low_complexity Low_complexity 1 24 0 186 301 125 37 chr13 81119431 81119567 -38625331 - L2 LINE L2 0 3313 3166 686 215 194 0 chr13 81121543 81121734 -38623164 + MIR SINE MIR 8 235 -27 2025 134 7 3 chr13 81125700 81126005 -38618893 + AluSx SINE Alu 1 306 -6 750 258 75 43 chr13 81128427 81129000 -38615898 - HAL1 LINE L1 -2 2505 1883 23 54 0 0 chr13 81129035 81129072 -38615826 + AT_rich Low_complexity Low_complexity 1 37 0 215 248 138 64 chr13 81129572 81129681 -38615217 + L2 LINE L2 3156 3272 0 341 341 0 43 chr13 81129718 81129882 -38615016 + L3 LINE CR1 600 756 -821 215 322 61 9 chr13 81130858 81130973 -38613925 + MIR SINE MIR 82 202 -60 185 384 12 12 chr13 81131279 81131365 -38613533 + L2 LINE L2 3186 3271 -1 213 39 0 0 chr13 81132614 81132640 -38612258 + (GA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr13 81132811 81132839 -38612059 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 81133049 81133071 -38611827 + AT_rich Low_complexity Low_complexity 1 22 0 223 246 0 0 chr13 81133190 81133247 -38611651 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 805 246 103 74 chr13 81134479 81134869 -38610029 - MLT1J LTR MaLR -3 508 108 471 360 66 75 chr13 81135808 81136275 -38608623 + L2 LINE L2 2809 3271 -1 1667 181 7 0 chr13 81137865 81138292 -38606606 + AluJb SINE Alu 3 431 0 234 91 0 0 chr13 81138295 81138328 -38606570 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 23 54 0 0 chr13 81139599 81139636 -38605262 + AT_rich Low_complexity Low_complexity 1 37 0 267 190 0 0 chr13 81139674 81139732 -38605166 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 2073 134 0 0 chr13 81139807 81140099 -38604799 - AluSx SINE Alu -18 294 3 863 330 179 21 chr13 81140685 81141410 -38603488 - L3 LINE CR1 -84 1493 654 426 287 168 17 chr13 81141668 81141902 -38602996 + L2 LINE L2 2778 3039 -274 2329 108 20 8 chr13 81141902 81142253 -38602645 - THE1A LTR MaLR 0 355 1 248 287 154 21 chr13 81142576 81142719 -38602179 + L2 LINE L2 1783 1944 -1370 327 346 151 37 chr13 81142856 81143526 -38601372 + L2 LINE L2 2006 2751 -563 216 82 41 20 chr13 81144209 81144258 -38600640 + (TA)n Simple_repeat Simple_repeat 1 50 0 521 192 135 0 chr13 81144750 81144854 -38600044 - FLAM_A SINE Alu -9 133 16 286 346 150 0 chr13 81145800 81145933 -38598965 + MIR SINE MIR 20 172 -90 249 262 0 0 chr13 81146208 81146269 -38598629 + Charlie4 DNA MER1_type 1901 1961 0 428 210 3 52 chr13 81146864 81146998 -38597900 + L1PB4 LINE L1 6038 6165 -1 785 282 32 24 chr13 81147025 81147273 -38597625 + MIR SINE MIR 11 260 -2 2299 96 3 0 chr13 81147498 81147801 -38597097 - AluSp SINE Alu -9 304 1 383 253 40 16 chr13 81148560 81148720 -38596178 - MLT1H LTR MaLR -2 547 397 529 251 0 32 chr13 81148996 81149142 -38595756 - MLT1H LTR MaLR -362 187 3 279 349 52 35 chr13 81149628 81149800 -38595098 - L2 LINE L2 -6 3307 3133 421 350 66 58 chr13 81149999 81150410 -38594488 - L2 LINE L2 -352 2962 2549 193 321 0 62 chr13 81150408 81150489 -38594409 - L2 LINE L2 0 3272 3197 * 233 312 156 10 chr13 81151635 81151805 -38593093 - MIR SINE MIR -52 210 14 431 269 73 73 chr13 81152159 81152419 -38592479 + MIR SINE MIR 3 262 0 254 309 119 79 chr13 81152444 81152469 -38592429 + L2 LINE L2 1965 1988 -1326 2436 74 0 6 chr13 81152469 81152781 -38592117 - AluY SINE Alu -1 310 1 254 309 119 79 chr13 81152781 81153467 -38591431 + L2 LINE L2 1988 2705 -609 425 253 42 6 chr13 81153484 81153650 -38591248 + (TA)n Simple_repeat Simple_repeat 1 172 0 1695 229 108 32 chr13 81153995 81154553 -38590345 + MLT1E2 LTR MaLR 27 626 0 216 279 29 0 chr13 81154599 81154667 -38590231 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 468 260 26 109 chr13 81155834 81155931 -38588967 + MIR SINE MIR 74 149 -113 673 112 0 0 chr13 81155931 81156029 -38588869 - HY3 scRNA scRNA -3 98 1 468 260 26 109 chr13 81156029 81156123 -38588775 + MIR SINE MIR 149 249 -13 279 261 31 0 chr13 81156246 81156311 -38588587 - MIR SINE MIR -3 259 193 713 249 23 12 chr13 81156311 81156484 -38588414 + MER8 DNA MER2_type 1 175 -64 316 206 14 14 chr13 81156518 81156591 -38588307 - Tigger2 DNA MER2_type -2645 73 1 414 268 0 21 chr13 81156605 81156702 -38588196 - MIR SINE MIR -162 100 6 210 301 119 42 chr13 81157806 81157949 -38586949 - L2 LINE L2 -4 3309 3156 655 333 9 5 chr13 81157979 81158189 -38586709 - MIR SINE MIR -21 241 31 3903 103 2 18 chr13 81158273 81158836 -38586062 + MER41A LTR ERV1 1 554 0 192 351 31 70 chr13 81158861 81159089 -38585809 - L2 LINE L2 -209 3063 2845 914 134 85 0 chr13 81159171 81159335 -38585563 + MER5B DNA MER1_type 1 178 0 855 233 0 21 chr13 81159904 81160093 -38584805 + AluJb SINE Alu 127 311 -1 219 318 11 23 chr13 81160364 81160452 -38584446 - L2 LINE L2 -678 2636 2550 235 209 33 44 chr13 81160675 81160766 -38584132 + HAL1b LINE L1 1187 1276 -72 38 22 0 0 chr13 81160908 81160953 -38583945 + AT_rich Low_complexity Low_complexity 1 45 0 385 269 23 54 chr13 81161001 81161131 -38583767 - MIR SINE MIR 0 262 137 467 270 24 16 chr13 81161180 81161306 -38583592 - MIR SINE MIR -1 261 135 1808 132 32 48 chr13 81162957 81163268 -38581630 - AluSx SINE Alu -6 306 1 1704 211 59 3 chr13 81163330 81163667 -38581231 - MLT1A1 LTR MaLR -6 359 4 353 294 0 0 chr13 81163828 81163913 -38580985 - MIR3 SINE MIR -28 180 96 1805 223 108 49 chr13 81163913 81164504 -38580394 + MLT1E2 LTR MaLR 1 626 0 358 74 0 0 chr13 81164894 81164948 -38579950 + L1MA3 LINE L1 6252 6305 0 31 26 0 0 chr13 81167467 81167505 -38577393 + AT_rich Low_complexity Low_complexity 1 38 0 685 234 8 78 chr13 81168134 81168390 -38576508 - MER112 DNA MER1_type -17 243 6 2360 209 51 56 chr13 81168597 81169205 -38575693 + MER77 LTR ERV1 1 605 0 338 250 0 0 chr13 81169224 81169304 -38575594 - L1ME LINE L1 -297 5824 5745 298 240 83 23 chr13 81169393 81169574 -38575324 - L1ME LINE L1 -732 5430 5282 180 0 0 0 chr13 81170171 81170191 -38574707 + (GA)n Simple_repeat Simple_repeat 1 20 0 183 80 0 0 chr13 81170796 81170821 -38574077 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 34 24 0 0 chr13 81171298 81171339 -38573559 + AT_rich Low_complexity Low_complexity 1 41 0 520 242 19 85 chr13 81171560 81171820 -38573078 - L1ME LINE L1 -349 5772 5530 5879 115 3 29 chr13 81172019 81173145 -38571753 - L1PB3 LINE L1 -7 6147 5028 3108 121 68 8 chr13 81173220 81173718 -38571180 - LTR26 LTR ERV1 -75 528 1 1898 183 50 25 chr13 81173720 81173902 -38570996 - L1MC/D LINE L1 -703 5630 5454 2134 73 0 0 chr13 81173902 81174193 -38570705 - AluY SINE Alu 0 314 24 1898 183 50 25 chr13 81174193 81174637 -38570261 - L1MC/D LINE L1 -879 5454 4975 455 181 11 21 chr13 81174650 81174744 -38570154 + MLT2C2 LTR ERVL 121 213 -251 * 597 137 8 84 chr13 81174739 81174802 -38570096 + MSTC LTR MaLR 305 354 -74 2302 55 24 3 chr13 81174802 81175095 -38569803 - AluY SINE Alu -12 299 1 597 137 8 84 chr13 81175095 81175162 -38569736 + MSTC LTR MaLR 354 425 -3 478 277 0 9 chr13 81175162 81175287 -38569611 + MLT1A2 LTR MaLR 190 298 -76 336 226 60 0 chr13 81175285 81175369 -38569529 - MER21B LTR ERV1 -374 489 401 * 287 50 125 0 chr13 81175829 81175869 -38569029 + MER85 DNA T2_type 95 139 0 740 340 109 56 chr13 81176189 81176924 -38567974 + L3 LINE CR1 420 1193 -384 8124 225 39 68 chr13 81176932 81177916 -38566982 - L1MC4a LINE L1 -264 7544 6533 222 118 0 0 chr13 81177916 81177950 -38566948 + (CA)n Simple_repeat Simple_repeat 1 34 0 8124 225 39 68 chr13 81177950 81179202 -38565696 - L1MC4a LINE L1 -1275 6533 5404 2372 82 13 0 chr13 81179202 81179506 -38565392 - AluSp SINE Alu -5 308 1 8124 225 39 68 chr13 81179506 81180260 -38564638 - L1MC4a LINE L1 -2404 5404 4630 227 250 153 14 chr13 81180308 81180380 -38564518 + L3 LINE CR1 1347 1428 -149 199 308 0 0 chr13 81180408 81180460 -38564438 - MER5A DNA MER1_type -1 188 137 392 215 65 0 chr13 81180800 81180893 -38564005 + L1PA16 LINE L1 6052 6150 -16 4931 61 6 0 chr13 81181154 81181789 -38563109 - L1PA7 LINE L1 0 6154 5516 521 333 59 15 chr13 81181858 81182062 -38562836 + MIR SINE MIR 8 220 -42 278 203 0 27 chr13 81182697 81182771 -38562127 + (CACG)n Simple_repeat Simple_repeat 4 75 0 246 263 38 0 chr13 81184430 81184510 -38560388 + CT-rich Low_complexity Low_complexity 2 84 0 257 374 84 0 chr13 81184807 81184914 -38559984 + L2 LINE L2 3118 3233 -39 796 256 73 18 chr13 81185061 81185280 -38559618 - MIR SINE MIR -31 231 1 21 36 0 0 chr13 81186573 81186601 -38558297 + AT_rich Low_complexity Low_complexity 1 28 0 1832 146 4 0 chr13 81186812 81187087 -38557811 + AluJb SINE Alu 25 300 -12 643 182 139 0 chr13 81187891 81188056 -38556842 + L1MA4A LINE L1 5935 6122 -181 376 247 0 0 chr13 81188061 81188150 -38556748 + L1MA4A LINE L1 6190 6278 -25 241 323 62 10 chr13 81190158 81190254 -38554644 - L2 LINE L2 0 3272 3172 27 73 0 0 chr13 81190478 81190533 -38554365 + AT_rich Low_complexity Low_complexity 1 55 0 918 175 84 0 chr13 81190989 81191155 -38553743 - L1MB1 LINE L1 -41 6148 5969 757 212 19 42 chr13 81191154 81191366 -38553532 + L1MA10 LINE L1 6125 6331 -3 * 302 270 14 0 chr13 81192242 81192316 -38552582 - L2 LINE L2 -1 3312 3238 699 328 127 20 chr13 81193435 81194146 -38550752 - L2 LINE L2 -1 3312 2520 278 333 51 8 chr13 81194282 81194399 -38550499 + MIR SINE MIR 141 262 0 339 345 71 0 chr13 81194618 81194731 -38550167 - L2 LINE L2 -20 3252 3132 347 274 57 19 chr13 81195151 81195308 -38549590 + MER103 DNA DNA 1 163 -3 2209 150 12 40 chr13 81195565 81195869 -38549029 - MLT1B LTR MaLR 0 390 98 2719 28 0 16 chr13 81195869 81196190 -38548708 + AluYb8 SINE Alu 1 316 -2 2209 150 12 40 chr13 81196190 81196286 -38548612 - MLT1B LTR MaLR -292 98 1 274 295 134 18 chr13 81196399 81196511 -38548387 - L2 LINE L2 0 3272 3148 1613 156 47 71 chr13 81196754 81197119 -38547779 + MLT1A1 LTR MaLR 10 365 0 379 191 0 0 chr13 81197478 81197546 -38547352 - L2 LINE L2 -1 3312 3245 2437 150 25 25 chr13 81197655 81198094 -38546804 + L1PA16 LINE L1 5719 6157 -9 395 300 43 0 chr13 81198104 81198244 -38546654 + L1ME1 LINE L1 6020 6165 -1 515 198 75 0 chr13 81198540 81198646 -38546252 + MER81 DNA DNA 1 114 0 226 368 52 0 chr13 81199111 81199247 -38545651 + MIR SINE MIR 56 198 -64 207 209 0 0 chr13 81199295 81199338 -38545560 + (TTA)n Simple_repeat Simple_repeat 2 44 0 358 354 139 15 chr13 81199433 81199707 -38545191 - L3 LINE CR1 -369 1208 901 25705 31 5 0 chr13 81201686 81204841 -38540057 - L1P LINE L1 -791 5355 2185 6690 31 4 2 chr13 81204949 81205754 -38539144 + L1PA3 LINE L1 5350 6155 0 272 222 48 0 chr13 81205755 81205818 -38539080 + MIR SINE MIR 148 213 -49 182 346 119 19 chr13 81205949 81206108 -38538790 + L3b LINE CR1 1409 1583 0 186 371 73 34 chr13 81207255 81207460 -38537438 + L2 LINE L2 2526 2738 -576 387 278 65 47 chr13 81207542 81207711 -38537187 + MIR SINE MIR 89 260 -2 575 300 103 32 chr13 81208188 81208528 -38536370 + L2 LINE L2 2935 3298 -15 2159 102 3 0 chr13 81208536 81208881 -38536017 + AluSp SINE Alu 1 346 0 205 333 0 0 chr13 81209048 81209114 -38535784 + MIR SINE MIR 197 262 0 892 144 32 37 chr13 81209279 81209467 -38535431 + L1MB1 LINE L1 5982 6168 0 243 281 64 61 chr13 81209628 81209811 -38535087 + MIR SINE MIR 5 193 -32 22 0 0 0 chr13 81210891 81210913 -38533985 + AT_rich Low_complexity Low_complexity 1 22 0 3490 220 36 24 chr13 81211508 81212505 -38532393 - L1ME1 LINE L1 -7 6159 5152 1623 98 0 0 chr13 81212793 81212997 -38531901 + AluSx SINE Alu 1 204 -108 336 332 183 34 chr13 81213554 81213789 -38531109 - L3b LINE CR1 -94 1489 1220 2132 58 72 10 chr13 81214084 81214377 -38530521 + AluY SINE Alu 1 311 0 435 155 14 0 chr13 81214621 81214692 -38530206 - AluS SINE Alu -240 72 1 22 56 0 0 chr13 81215108 81215144 -38529754 + AT_rich Low_complexity Low_complexity 1 36 0 383 340 26 104 chr13 81217052 81217361 -38527537 - L2 LINE L2 -9 3263 2979 3171 24 8 0 chr13 81217761 81218136 -38526762 + L1PA4 LINE L1 5775 6152 -3 25 0 0 0 chr13 81219382 81219407 -38525491 + AT_rich Low_complexity Low_complexity 1 25 0 446 346 74 9 chr13 81219602 81219833 -38525065 - MIR SINE MIR -13 249 4 659 200 0 9 chr13 81220370 81220485 -38524413 + FLAM_A SINE Alu 1 114 -19 1323 234 76 13 chr13 81220625 81221005 -38523893 + LTR16B LTR ERVL 8 411 -53 277 211 76 134 chr13 81221038 81221209 -38523689 - MIR3 SINE MIR -45 163 3 222 37 0 0 chr13 81221445 81221472 -38523426 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 220 327 43 86 chr13 81222382 81222639 -38522259 + L2 LINE L2 2825 3070 -202 24 32 0 0 chr13 81222789 81222820 -38522078 + AT_rich Low_complexity Low_complexity 1 31 0 185 0 0 39 chr13 81222947 81222973 -38521925 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 807 285 47 0 chr13 81223467 81223681 -38521217 + MER58A DNA MER1_type 1 224 0 243 186 0 17 chr13 81224145 81224204 -38520694 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 41 48 0 0 chr13 81224352 81224414 -38520484 + AT_rich Low_complexity Low_complexity 1 62 0 350 298 79 70 chr13 81224577 81224792 -38520106 - MER102b DNA MER1_type -22 319 103 498 280 180 0 chr13 81224860 81225060 -38519838 + MIR SINE MIR 15 250 -12 2060 282 55 40 chr13 81225332 81226247 -38518651 + L1ME3A LINE L1 4275 5174 -996 2739 113 28 9 chr13 81226247 81226673 -38518225 - MER57B LTR ERV1 0 434 1 2060 282 55 40 chr13 81226673 81227555 -38517343 + L1ME3A LINE L1 5174 6134 -36 228 286 36 54 chr13 81228525 81228637 -38516261 - L2 LINE L2 -1 3312 3203 2197 114 7 0 chr13 81230498 81230797 -38514101 - AluSg SINE Alu -9 301 1 479 252 229 31 chr13 81231322 81231580 -38513318 - L2 LINE L2 0 3313 3005 355 289 34 67 chr13 81231566 81231715 -38513183 - L2 LINE L2 -552 2762 2619 * 1202 265 213 30 chr13 81231798 81232584 -38512314 - L2 LINE L2 -966 2348 1420 404 222 194 14 chr13 81233154 81233298 -38511600 - MER96 DNA MER1_type? -4 171 2 208 290 16 0 chr13 81233661 81233723 -38511175 + MIR SINE MIR 200 262 0 21 0 0 0 chr13 81233774 81233795 -38511103 + AT_rich Low_complexity Low_complexity 1 21 0 183 357 60 12 chr13 81234010 81234094 -38510804 - MIR3 SINE MIR -106 102 15 300 223 10 68 chr13 81234310 81234413 -38510485 - MLT1I LTR MaLR -2 407 311 365 299 101 0 chr13 81234788 81234947 -38509951 + MIR SINE MIR 5 190 -62 195 368 38 19 chr13 81235134 81235240 -38509658 - L2 LINE L2 -2 3311 3204 419 260 39 8 chr13 81235605 81235732 -38509166 - MER5A DNA MER1_type -52 137 7 207 245 0 0 chr13 81236957 81237006 -38507892 + (ATG)n Simple_repeat Simple_repeat 3 51 0 24 67 0 0 chr13 81238648 81238693 -38506205 + AT_rich Low_complexity Low_complexity 1 45 0 2427 78 10 0 chr13 81238904 81239212 -38505686 + AluY SINE Alu 1 311 0 250 200 0 0 chr13 81239227 81239272 -38505626 + L2 LINE L2 3216 3260 -12 284 172 16 0 chr13 81239413 81239477 -38505421 + L1MA4 LINE L1 6236 6300 0 2970 185 41 35 chr13 81239640 81240321 -38504577 - MER21B LTR ERV1 -17 846 162 814 131 0 0 chr13 81240533 81240655 -38504243 + L1PA8 LINE L1 6042 6163 -9 332 277 31 54 chr13 81240822 81240952 -38503946 + MIR SINE MIR 136 262 0 432 325 125 46 chr13 81241087 81241392 -38503506 - L2 LINE L2 -4 3268 2940 963 194 5 0 chr13 81241640 81241836 -38503062 - L1MB1 LINE L1 -5 6163 5967 686 277 101 59 chr13 81242035 81242410 -38502488 - MLT1J2 LTR MaLR -55 391 1 275 330 78 0 chr13 81242411 81242514 -38502384 - L2 LINE L2 -994 2320 2210 222 321 27 18 chr13 81242831 81242943 -38501955 - L2 LINE L2 -99 3214 3102 246 302 32 0 chr13 81243559 81243622 -38501276 - L2 LINE L2 -2 3270 3206 206 237 13 0 chr13 81245655 81245731 -38499167 + (TA)n Simple_repeat Simple_repeat 1 77 0 350 287 127 27 chr13 81246273 81246423 -38498475 - MIR SINE MIR -66 196 32 452 284 37 0 chr13 81246459 81246593 -38498305 - MIR SINE MIR -13 249 111 234 0 0 0 chr13 81248365 81248391 -38496507 + (A)n Simple_repeat Simple_repeat 1 26 0 262 308 82 48 chr13 81248505 81248651 -38496247 - L2 LINE L2 -1 3271 3121 * 533 290 58 31 chr13 81248645 81248869 -38496029 - MIR SINE MIR 0 262 33 183 42 0 0 chr13 81249615 81249639 -38495259 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2300 116 0 0 chr13 81249776 81250078 -38494820 + AluSq SINE Alu 3 304 -9 217 221 0 23 chr13 81250457 81250543 -38494355 + GA-rich Low_complexity Low_complexity 2 85 0 182 114 0 29 chr13 81250574 81250609 -38494289 + (GGGAA)n Simple_repeat Simple_repeat 1 34 0 1044 70 5 43 chr13 81250996 81251062 -38493836 + (GAAA)n Simple_repeat Simple_repeat 1 242 0 1044 70 5 43 chr13 81251062 81251248 -38493650 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2000 111 57 0 chr13 81251273 81251553 -38493345 + AluSc SINE Alu 6 301 -8 21 36 0 0 chr13 81252039 81252067 -38492831 + AT_rich Low_complexity Low_complexity 1 28 0 1254 125 65 0 chr13 81252077 81252261 -38492637 + AluSx SINE Alu 2 197 -115 473 273 62 81 chr13 81252824 81253509 -38491389 - HERVI LTR ERV1 -646 7139 3387 287 324 125 8 chr13 81254267 81254523 -38490375 - HERVI LTR ERV1 -4000 2896 2611 923 322 38 49 chr13 81254538 81255416 -38489482 - HERVI LTR ERV1 -2663 3986 3119 381 303 51 17 chr13 81256572 81256747 -38488151 - HERVI LTR ERV1 -6815 970 790 287 147 0 13 chr13 81258105 81258180 -38486718 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 1897 147 10 19 chr13 81258841 81259154 -38485744 - AluSx SINE Alu 0 312 3 2461 65 3 3 chr13 81259176 81259483 -38485415 - AluY SINE Alu -4 307 1 31 0 0 0 chr13 81259703 81259734 -38485164 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 81260349 81260371 -38484527 + AT_rich Low_complexity Low_complexity 1 22 0 2306 99 23 0 chr13 81260720 81261024 -38483874 + AluSp SINE Alu 1 311 -2 15936 62 1 18 chr13 81261742 81263937 -38480961 - L1P LINE L1 -3987 2159 3 191 256 0 0 chr13 81264172 81264211 -38480687 - MIR SINE MIR -66 196 158 307 259 96 89 chr13 81264279 81264310 -38480588 - MIR SINE MIR -120 142 113 1794 113 18 101 chr13 81264310 81264647 -38480251 + AluSg1 SINE Alu 1 309 0 307 259 96 89 chr13 81264647 81264750 -38480148 - MIR SINE MIR -149 113 7 236 214 18 0 chr13 81264801 81264857 -38480041 - MLT1E1 LTR MaLR 0 654 598 228 67 0 0 chr13 81264857 81264887 -38480011 + (TA)n Simple_repeat Simple_repeat 1 30 0 1549 198 84 104 chr13 81264936 81265435 -38479463 - MLT1E1 LTR MaLR -57 597 109 356 219 12 0 chr13 81265405 81265487 -38479411 - MLT1E LTR MaLR -427 166 84 * 217 269 30 15 chr13 81267501 81267568 -38477330 + L2 LINE L2 3246 3313 0 206 244 0 0 chr13 81267789 81267830 -38477068 + L2 LINE L2 3254 3294 -19 211 319 44 44 chr13 81267944 81268057 -38476841 + L2 LINE L2 2943 3055 -217 22 56 0 0 chr13 81268137 81268173 -38476725 + AT_rich Low_complexity Low_complexity 1 36 0 2065 137 3 3 chr13 81268437 81268736 -38476162 - AluSx SINE Alu -13 299 1 225 0 0 0 chr13 81270539 81270564 -38474334 + (A)n Simple_repeat Simple_repeat 1 25 0 181 244 24 0 chr13 81270579 81270620 -38474278 + L2 LINE L2 3264 3305 -8 21 36 0 0 chr13 81270873 81270901 -38473997 + AT_rich Low_complexity Low_complexity 1 28 0 416 213 111 9 chr13 81271432 81271540 -38473358 - MIR SINE MIR -109 153 35 204 264 37 117 chr13 81271582 81271745 -38473153 + MIR SINE MIR 110 259 -3 461 319 88 26 chr13 81271770 81271996 -38472902 + MIR SINE MIR 1 240 -22 393 22 0 0 chr13 81273159 81273205 -38471693 + (CA)n Simple_repeat Simple_repeat 2 47 0 681 210 120 30 chr13 81273802 81274002 -38470896 - MER20 DNA MER1_type 0 219 2 22 0 0 0 chr13 81275021 81275043 -38469855 + AT_rich Low_complexity Low_complexity 1 22 0 771 262 32 20 chr13 81275131 81275383 -38469515 - MIR SINE MIR -3 259 5 211 239 22 0 chr13 81275455 81275501 -38469397 - MIR SINE MIR -137 125 79 265 296 37 56 chr13 81276980 81277088 -38467810 - MIR SINE MIR -122 140 35 1935 158 7 0 chr13 81278892 81279196 -38465702 + AluJb SINE Alu 1 306 -6 280 250 48 66 chr13 81279274 81279394 -38465504 - MIR SINE MIR -67 195 71 261 136 0 85 chr13 81280099 81280158 -38464740 - L1PA16 LINE L1 0 6166 6113 2075 140 6 12 chr13 81280170 81280499 -38464399 - THE1B LTR MaLR -15 349 23 1424 148 58 4 chr13 81280500 81280743 -38464155 - L1PA16 LINE L1 -63 6103 5848 451 259 7 72 chr13 81281303 81281442 -38463456 - L2 LINE L2 0 3313 3184 198 204 189 38 chr13 81281472 81281604 -38463294 - L2 LINE L2 -1613 1701 1550 227 150 17 0 chr13 81281692 81281752 -38463146 + (TA)n Simple_repeat Simple_repeat 2 62 0 1017 198 58 36 chr13 81283885 81284193 -38460705 - MER33 DNA MER1_type -9 315 1 250 231 0 29 chr13 81284240 81284344 -38460554 + CT-rich Low_complexity Low_complexity 4 104 0 186 143 0 0 chr13 81284353 81284388 -38460510 + (TC)n Simple_repeat Simple_repeat 2 36 0 827 147 0 0 chr13 81285215 81285351 -38459547 + L1MA3 LINE L1 6170 6305 0 1289 189 68 40 chr13 81285465 81285761 -38459137 + AluJo SINE Alu 1 304 -8 28 29 0 0 chr13 81286173 81286208 -38458690 + AT_rich Low_complexity Low_complexity 1 35 0 1896 161 3 10 chr13 81287231 81287536 -38457362 - AluSx SINE Alu -9 303 1 4391 160 54 43 chr13 81287550 81288532 -38456366 - L1MA10 LINE L1 -1 6333 5341 457 323 112 70 chr13 81289426 81290306 -38454592 - L2 LINE L2 -10 3303 2383 265 289 12 0 chr13 81290743 81290826 -38454072 + (TA)n Simple_repeat Simple_repeat 1 84 0 1175 76 6 0 chr13 81290970 81291127 -38453771 - L1PA8A LINE L1 -1063 5083 4926 1957 83 23 7 chr13 81291140 81291440 -38453458 + L1PA8A LINE L1 5098 5402 -744 1220 52 0 13 chr13 81291440 81291595 -38453303 + AluY SINE Alu 150 302 -9 5619 61 7 0 chr13 81291595 81292302 -38452596 + L1PA8A LINE L1 5393 6104 -27 1593 177 14 20 chr13 81292795 81293089 -38451809 - AluJo SINE Alu -20 292 1 208 315 14 14 chr13 81293134 81293207 -38451691 + L2 LINE L2 3183 3255 -17 299 271 0 0 chr13 81293215 81293285 -38451613 - MER2 DNA MER2_type -6 339 270 3339 156 0 0 chr13 81293299 81293862 -38451036 + L1PA16 LINE L1 5603 6165 -1 215 297 154 11 chr13 81294123 81294214 -38450684 + L2 LINE L2 3177 3280 -33 1558 170 0 39 chr13 81294805 81295087 -38449811 - AluJo SINE Alu -41 271 1 3075 124 23 6 chr13 81295255 81295779 -38449119 - L1MA8 LINE L1 0 6291 5759 333 289 89 6 chr13 81296021 81296201 -38448697 - MER117 DNA MER1_type -2 195 1 4561 161 6 19 chr13 81296733 81297571 -38447327 - L1PB4 LINE L1 -3 6153 5327 1119 161 38 9 chr13 81297616 81297827 -38447071 - MER20 DNA MER1_type 0 219 3 752 305 4 38 chr13 81298944 81299206 -38445692 + MIR SINE MIR 10 262 0 556 297 85 19 chr13 81299267 81299479 -38445419 + MIR SINE MIR 35 260 -2 284 250 12 12 chr13 81299537 81299607 -38445291 - L2 LINE L2 -3 3269 3197 1721 200 3 0 chr13 81299607 81299912 -38444986 + AluJb SINE Alu 1 306 -6 284 250 12 12 chr13 81299912 81299925 -38444973 - L2 LINE L2 -74 3198 3186 236 337 20 40 chr13 81300099 81300200 -38444698 - L2 LINE L2 -1 3271 3173 203 339 95 54 chr13 81300534 81300702 -38444196 + MIR SINE MIR 27 201 -61 24 0 0 0 chr13 81300797 81300821 -38444077 + AT_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr13 81302911 81302943 -38441955 + AT_rich Low_complexity Low_complexity 1 32 0 243 324 102 9 chr13 81303720 81303828 -38441070 + L2 LINE L2 3151 3268 -4 741 189 87 38 chr13 81303870 81304134 -38440764 - Charlie1 DNA MER1_type -57 2704 2428 273 254 30 0 chr13 81304149 81304216 -38440682 - Charlie1 DNA MER1_type -2690 71 3 21 36 0 0 chr13 81304392 81304420 -38440478 + AT_rich Low_complexity Low_complexity 1 28 0 591 291 87 17 chr13 81304427 81304668 -38440230 + MIR SINE MIR 3 260 -2 248 317 164 0 chr13 81305273 81305377 -38439521 - L2 LINE L2 -14 3299 3179 362 273 91 28 chr13 81306086 81306229 -38438669 + MIR SINE MIR 111 262 0 187 213 21 21 chr13 81306389 81306436 -38438462 - L2 LINE L2 -5 3308 3262 383 100 43 0 chr13 81306975 81307080 -38437818 - L1PA2 LINE L1 0 6155 6080 2082 90 7 11 chr13 81307640 81307918 -38436980 - AluSp SINE Alu -16 297 21 1053 187 30 5 chr13 81308437 81308635 -38436263 + MER2 DNA MER2_type 2 204 -141 1708 236 55 29 chr13 81308724 81309295 -38435603 - MLT1G LTR MaLR -34 556 2 255 93 0 0 chr13 81312388 81312431 -38432467 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1211 126 151 109 chr13 81312434 81312625 -38432273 - AluSx SINE Alu -11 301 119 432 0 0 0 chr13 81312625 81312673 -38432225 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 1893 131 0 7 chr13 81312678 81312960 -38431938 - AluSx SINE Alu -32 280 1 1211 126 151 109 chr13 81312960 81313047 -38431851 - AluSx SINE Alu -196 116 5 239 71 24 0 chr13 81313893 81313935 -38430963 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 32 0 0 chr13 81314498 81314529 -38430369 + AT_rich Low_complexity Low_complexity 1 31 0 186 193 0 105 chr13 81314656 81314713 -38430185 + L2 LINE L2 3263 3313 0 23 0 0 0 chr13 81315226 81315249 -38429649 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 81315290 81315327 -38429571 + AT_rich Low_complexity Low_complexity 1 37 0 337 286 118 8 chr13 81315922 81316041 -38428857 - L2 LINE L2 0 3313 3182 273 339 36 18 chr13 81316512 81316736 -38428162 + L1MC4a LINE L1 5668 5895 -1913 441 0 0 0 chr13 81316739 81316788 -38428110 + (TA)n Simple_repeat Simple_repeat 2 50 0 233 291 8 8 chr13 81317169 81317286 -38427612 + L1ME LINE L1 5773 5889 -232 201 241 0 0 chr13 81317298 81317352 -38427546 + (TG)n Simple_repeat Simple_repeat 1 54 0 2449 88 0 0 chr13 81317441 81317749 -38427149 - AluSc SINE Alu -1 308 1 1572 64 0 0 chr13 81317789 81317991 -38426907 + L1PA6 LINE L1 5953 6154 0 2600 96 22 0 chr13 81318384 81318740 -38426158 + THE1B LTR MaLR 1 364 0 457 211 90 45 chr13 81319645 81319801 -38425097 - L1ME3 LINE L1 0 6162 6000 214 311 46 86 chr13 81319981 81320283 -38424615 + L2 LINE L2 2931 3220 -52 292 333 0 0 chr13 81320476 81320569 -38424329 + L2 LINE L2 3221 3313 0 49 43 0 0 chr13 81321515 81321585 -38423313 + AT_rich Low_complexity Low_complexity 1 70 0 23 68 0 0 chr13 81321610 81321654 -38423244 + AT_rich Low_complexity Low_complexity 1 44 0 247 195 44 0 chr13 81321656 81321769 -38423129 + (TA)n Simple_repeat Simple_repeat 2 119 0 288 292 76 6 chr13 81322790 81322961 -38421937 + L1M4 LINE L1 4111 4293 -1853 1913 62 0 0 chr13 81373000 81373227 -38371671 + AluY SINE Alu 53 279 -32 252 0 0 0 chr13 81373228 81373256 -38371642 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1104 209 9 9 chr13 81373258 81373485 -38371413 + HUERS-P3 LTR ERV1 3657 6617 -379 1056 225 40 18 chr13 81373650 81373928 -38370970 + HUERS-P3 LTR ERV1 8299 8919 0 4952 108 27 41 chr13 81373931 81374367 -38370531 + LTR19C LTR ERV1 3 425 -354 2399 74 7 10 chr13 81374367 81374677 -38370221 + AluSx SINE Alu 1 309 -3 4952 108 27 41 chr13 81374677 81375028 -38369870 + LTR19C LTR ERV1 425 779 0 24 0 0 0 chr13 81375533 81375557 -38369341 + AT_rich Low_complexity Low_complexity 1 24 0 214 224 0 17 chr13 81375695 81375753 -38369145 + L2 LINE L2 3257 3313 0 * 324 269 28 37 chr13 81375751 81375859 -38369039 + L2 LINE L2 3207 3313 0 24 0 0 0 chr13 81375862 81375886 -38369012 + AT_rich Low_complexity Low_complexity 1 24 0 231 128 51 0 chr13 81375999 81376038 -38368860 + L2 LINE L2 3188 3228 -85 300 309 162 7 chr13 81376821 81376957 -38367941 + MIR3 SINE MIR 46 202 -6 1172 123 22 0 chr13 81378053 81378232 -38366666 + L1MA6 LINE L1 5791 5973 -327 579 125 0 10 chr13 81378232 81378328 -38366570 + AluJb SINE Alu 15 109 -203 1243 123 106 38 chr13 81378341 81378576 -38366322 + AluSx SINE Alu 48 298 -14 303 93 0 0 chr13 81379479 81379522 -38365376 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 327 271 54 62 chr13 81381605 81381734 -38363164 - MIR SINE MIR -30 232 105 2300 74 43 7 chr13 81381734 81382033 -38362865 + AluSq SINE Alu 1 310 -3 499 294 49 87 chr13 81382107 81382207 -38362691 + MIR SINE MIR 8 110 -152 2515 58 7 0 chr13 81382207 81382516 -38362382 - AluSp SINE Alu -2 311 1 499 294 49 87 chr13 81382516 81382680 -38362218 + MIR SINE MIR 110 262 0 180 292 62 0 chr13 81383819 81383867 -38361031 + L3 LINE CR1 1074 1124 -453 289 298 62 43 chr13 81384019 81384180 -38360718 + L3 LINE CR1 1354 1517 -60 * 386 294 78 17 chr13 81384177 81384357 -38360541 - L3 LINE CR1 -895 682 492 251 303 156 18 chr13 81385266 81385375 -38359523 + MIR SINE MIR 20 143 -119 870 189 51 46 chr13 81385432 81385649 -38359249 + MER20 DNA MER1_type 2 219 0 1745 166 94 3 chr13 81385927 81386235 -38358663 + MER1B DNA MER1_type 1 336 -1 520 163 123 22 chr13 81387675 81387830 -38357068 + MER104 DNA Tc2 2 172 -8 432 265 121 23 chr13 81388068 81388283 -38356615 - MIR SINE MIR -14 248 13 210 275 92 37 chr13 81388305 81388414 -38356484 - L2 LINE L2 -1073 2241 2127 2432 292 183 27 chr13 81388425 81389816 -38355082 + L2 LINE L2 832 2440 -874 2374 87 3 0 chr13 81389886 81390186 -38354712 - AluSp SINE Alu -12 301 1 363 23 0 0 chr13 81390494 81390538 -38354360 + (TG)n Simple_repeat Simple_repeat 2 45 0 3911 200 32 50 chr13 81391030 81392016 -38352882 - LTR5 LTR ERVK 0 969 1 630 297 41 20 chr13 81392450 81392645 -38352253 - L2 LINE L2 -6 3307 3109 266 281 67 22 chr13 81392702 81392791 -38352107 + MIR SINE MIR 86 178 -84 2268 86 3 0 chr13 81392868 81393158 -38351740 + AluSx SINE Alu 1 291 -21 189 330 44 44 chr13 81393398 81393489 -38351409 + L3 LINE CR1 1485 1575 -2 328 351 102 50 chr13 81394161 81394725 -38350173 - L2 LINE L2 -101 3171 2576 2375 68 3 3 chr13 81395017 81395312 -38349586 - AluSp SINE Alu -18 295 1 2396 47 10 20 chr13 81395918 81396215 -38348683 - AluY SINE Alu -17 294 1 21 36 0 0 chr13 81396968 81396996 -38347902 + AT_rich Low_complexity Low_complexity 1 28 0 1990 125 0 7 chr13 81398005 81398285 -38346613 - AluSx SINE Alu -18 294 17 977 200 8 17 chr13 81398304 81398366 -38346532 - MER2 DNA MER2_type 0 345 284 21 0 0 0 chr13 81398366 81398387 -38346511 + AT_rich Low_complexity Low_complexity 1 21 0 977 200 8 17 chr13 81398387 81398585 -38346313 - MER2 DNA MER2_type -61 284 16 5708 12 0 0 chr13 81399006 81399651 -38345247 - L1PA2 LINE L1 -1 6154 5510 1880 161 11 0 chr13 81402947 81403232 -38341666 + AluSx SINE Alu 1 288 -24 288 53 0 0 chr13 81403233 81403271 -38341627 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 406 258 47 16 chr13 81404288 81404416 -38340482 - MIR SINE MIR -84 178 47 345 262 0 0 chr13 81404416 81404500 -38340398 + AluJ/FLAM SINE Alu 5 88 -214 1959 167 5 0 chr13 81404631 81405003 -38339895 + L1MC3 LINE L1 7401 7774 -11 295 286 92 14 chr13 81405753 81405880 -38339018 + MIR SINE MIR 30 129 -79 2158 235 119 137 chr13 81405913 81406135 -38338763 - L2 LINE L2 -4 3309 3085 2188 106 0 3 chr13 81406135 81406458 -38338440 - AluSx SINE Alu 0 322 1 2139 123 13 0 chr13 81406458 81406630 -38338268 - AluSq SINE Alu -8 305 126 482 0 0 17 chr13 81406630 81406689 -38338209 + (TTTTG)n Simple_repeat Simple_repeat 4 61 0 2139 123 13 0 chr13 81406689 81406817 -38338081 - AluSq SINE Alu -187 126 1 2158 235 119 137 chr13 81406817 81407705 -38337193 - L2 LINE L2 -227 3086 2184 2240 104 17 0 chr13 81407705 81408004 -38336894 + AluSx SINE Alu 7 310 -2 2158 235 119 137 chr13 81408004 81408302 -38336596 - L2 LINE L2 -1129 2184 1882 640 194 7 7 chr13 81408302 81408441 -38336457 + L1MD3 LINE L1 7846 7984 -11 2158 235 119 137 chr13 81408441 81408953 -38335945 - L2 LINE L2 -1431 1882 1294 1482 217 0 0 chr13 81409774 81410055 -38334843 + AluJo SINE Alu 2 282 -30 25 0 0 0 chr13 81410055 81410080 -38334818 + AT_rich Low_complexity Low_complexity 1 25 0 228 213 0 82 chr13 81413065 81413126 -38331772 + MIR SINE MIR 38 93 -115 608 233 93 20 chr13 81413185 81413335 -38331563 - MIR SINE MIR -92 170 10 222 91 0 0 chr13 81413442 81413475 -38331423 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 293 83 42 0 chr13 81413475 81413523 -38331375 + CT-rich Low_complexity Low_complexity 1 50 0 1217 49 5 32 chr13 81413523 81413708 -38331190 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3592 143 38 3 chr13 81416117 81416744 -38328154 + L1MC1 LINE L1 5677 6325 -8 670 177 14 0 chr13 81416744 81416885 -38328013 + L1MA5 LINE L1 6126 6268 -32 264 221 48 67 chr13 81417475 81417579 -38327319 + L2 LINE L2 3167 3268 -4 231 146 0 0 chr13 81417582 81417623 -38327275 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 221 241 69 0 chr13 81417639 81417697 -38327201 - MIR SINE MIR -63 199 138 212 250 12 25 chr13 81418792 81418872 -38326026 - MIR SINE MIR -48 214 136 361 303 101 8 chr13 81418950 81419069 -38325829 - MIR SINE MIR -121 141 12 238 240 133 0 chr13 81420608 81420683 -38324215 + MIR SINE MIR 158 242 -20 1103 219 125 66 chr13 81420705 81420901 -38323997 + MLT1C LTR MaLR 2 185 -282 2542 70 0 3 chr13 81420901 81421213 -38323685 + AluSq SINE Alu 1 311 -2 1103 219 125 66 chr13 81421213 81421455 -38323443 + MLT1C LTR MaLR 185 466 -1 300 175 12 62 chr13 81421557 81421637 -38323261 + L2 LINE L2 3229 3304 -9 249 83 0 0 chr13 81421643 81421679 -38323219 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 209 293 0 35 chr13 81421720 81421778 -38323120 - L2 LINE L2 -8 3264 3209 21 0 0 0 chr13 81422474 81422495 -38322403 + AT_rich Low_complexity Low_complexity 1 21 0 520 301 111 14 chr13 81424093 81424452 -38320446 - L1MC4 LINE L1 -547 7495 7102 2250 99 0 56 chr13 81424454 81424778 -38320120 + AluY SINE Alu 1 306 -5 460 273 55 0 chr13 81424863 81424973 -38319925 - MIR SINE MIR -111 151 36 22 35 0 0 chr13 81425717 81425746 -38319152 + AT_rich Low_complexity Low_complexity 1 29 0 473 291 7 7 chr13 81426462 81426603 -38318295 + MIR SINE MIR 76 216 -46 390 281 43 49 chr13 81427688 81427873 -38317025 + MIR SINE MIR 23 206 -56 21 89 0 0 chr13 81428522 81428578 -38316320 + AT_rich Low_complexity Low_complexity 1 56 0 216 308 13 13 chr13 81428706 81428784 -38316114 - L3b LINE CR1 -258 1325 1248 366 23 0 0 chr13 81428895 81428938 -38315960 + (TC)n Simple_repeat Simple_repeat 1 43 0 209 255 0 0 chr13 81428938 81428985 -38315913 + C-rich Low_complexity Low_complexity 3 49 0 599 240 36 5 chr13 81429006 81429197 -38315701 - MLT1E LTR MaLR -368 199 3 221 250 158 0 chr13 81429407 81429483 -38315415 - L2 LINE L2 -26 3287 3200 2917 3 0 0 chr13 81430523 81430834 -38314064 + AluYa5 SINE Alu 1 311 0 2079 138 0 6 chr13 81432688 81433000 -38311898 - AluSg SINE Alu 0 310 1 624 271 136 0 chr13 81433692 81433891 -38311007 - MIR SINE MIR -35 227 2 24 32 0 0 chr13 81433911 81433942 -38310956 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 81438869 81438900 -38305998 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 0 0 chr13 81439161 81439195 -38305703 + (TC)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr13 81439324 81439347 -38305551 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr13 81440266 81440304 -38304594 + AT_rich Low_complexity Low_complexity 1 38 0 1167 83 6 11 chr13 81441838 81442018 -38302880 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 249 33 0 0 chr13 81442309 81442339 -38302559 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 81443041 81443062 -38301836 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr13 81443135 81443174 -38301724 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 0 0 0 chr13 81443753 81443781 -38301117 + (T)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr13 81445645 81445667 -38299231 + (T)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr13 81446910 81446935 -38297963 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr13 81447245 81447275 -38297623 + AT_rich Low_complexity Low_complexity 1 30 0 192 40 0 0 chr13 81448194 81448219 -38296679 + (TG)n Simple_repeat Simple_repeat 1 25 0 204 150 0 25 chr13 81448235 81448275 -38296623 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr13 81449079 81449104 -38295794 + (CA)n Simple_repeat Simple_repeat 2 26 0 205 143 20 20 chr13 81456027 81456076 -38288822 + A-rich Low_complexity Low_complexity 5 53 0 32 26 0 0 chr13 81456625 81456664 -38288234 + GC_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr13 81456883 81456923 -38287975 + GC_rich Low_complexity Low_complexity 1 40 0 201 39 0 0 chr13 81456923 81456949 -38287949 + (CTG)n Simple_repeat Simple_repeat 3 28 0 375 78 0 0 chr13 81457403 81457454 -38287444 + (TG)n Simple_repeat Simple_repeat 2 52 0 360 0 0 0 chr13 81458015 81458055 -38286843 + (CA)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr13 81458280 81458304 -38286594 + AT_rich Low_complexity Low_complexity 1 24 0 214 250 113 73 chr13 81459755 81459879 -38285019 - L2 LINE L2 -5 3267 3139 557 143 61 31 chr13 81464768 81464866 -38280032 + AluJb SINE Alu 201 301 -11 230 327 161 18 chr13 81464952 81465120 -38279778 + MIR SINE MIR 5 196 -66 1471 195 73 42 chr13 81465575 81465777 -38279121 - MLT1A1 LTR MaLR 0 365 146 2138 104 17 3 chr13 81465777 81466074 -38278824 - AluY SINE Alu -9 302 2 1471 195 73 42 chr13 81466074 81466225 -38278673 - MLT1A1 LTR MaLR -219 146 1 2219 102 10 0 chr13 81466415 81466719 -38278179 - AluSp SINE Alu -6 307 1 393 167 15 0 chr13 81466816 81466882 -38278016 - MER58 DNA MER1_type 0 2420 2354 * 545 233 61 0 chr13 81466871 81467034 -38277864 - MER58 DNA MER1_type -116 225 53 1138 198 74 4 chr13 81467083 81467326 -38277572 + AluJo SINE Alu 1 260 -52 2112 98 0 7 chr13 81467406 81467682 -38277216 + AluSq SINE Alu 24 297 -16 180 0 0 0 chr13 81468769 81468789 -38276109 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 207 267 0 0 chr13 81472046 81472091 -38272807 - L3 LINE CR1 -1 1576 1532 24 53 0 0 chr13 81472784 81472822 -38272076 + AT_rich Low_complexity Low_complexity 1 38 0 338 323 68 0 chr13 81473144 81473277 -38271621 + L2 LINE L2 3167 3308 -5 190 293 69 0 chr13 81474336 81474394 -38270504 + MIR SINE MIR 64 125 -83 4741 180 48 24 chr13 81474642 81475630 -38269268 + Tigger6a DNA MER2_type 8 1018 -65 1148 184 18 14 chr13 81475635 81475853 -38269045 + AluJo SINE Alu 13 231 -81 22 0 0 0 chr13 81476728 81476750 -38268148 + AT_rich Low_complexity Low_complexity 1 22 0 412 262 49 8 chr13 81476867 81476989 -38267909 - MIR SINE MIR -17 245 119 479 125 0 100 chr13 81477932 81478012 -38266886 - AluJ/FRAM SINE Alu -21 291 220 2191 68 4 0 chr13 81480249 81480513 -38264385 + AluY SINE Alu 1 265 -46 180 0 0 0 chr13 81480773 81480793 -38264105 + (A)n Simple_repeat Simple_repeat 1 20 0 3389 89 9 0 chr13 81480793 81481241 -38263657 - L1PA8A LINE L1 -29 6102 5651 275 269 93 78 chr13 81481374 81481567 -38263331 - L2 LINE L2 0 3313 3118 766 287 51 13 chr13 81481575 81481812 -38263086 - MIR SINE MIR -16 246 1 323 298 183 31 chr13 81481864 81482236 -38262662 - L2 LINE L2 -222 3091 2636 319 254 15 0 chr13 81482219 81482286 -38262612 - MIR SINE MIR -187 75 8 * 189 350 167 17 chr13 81483485 81483665 -38261233 + L2 LINE L2 2938 3144 -128 365 259 158 58 chr13 81483728 81483923 -38260975 - L1MC5 LINE L1 -28 7933 7759 1734 151 26 100 chr13 81483923 81484313 -38260585 + MLT1A1 LTR MaLR 1 361 -4 365 259 158 58 chr13 81484313 81484631 -38260267 - L1MC5 LINE L1 -202 7759 7406 1042 220 176 28 chr13 81485541 81485864 -38259034 + MLT1B LTR MaLR 20 390 0 2580 48 0 3 chr13 81487250 81487599 -38257299 + AluY SINE Alu 1 348 0 637 303 26 106 chr13 81488702 81489088 -38255810 + L2 LINE L2 2899 3253 -19 1087 198 0 44 chr13 81489088 81489315 -38255583 + MER20 DNA MER1_type 3 219 0 1505 244 59 19 chr13 81492722 81493144 -38251754 - MER74B LTR ERVL -1 621 183 689 322 31 79 chr13 81493165 81493229 -38251669 + MER34 LTR ERV1 1 66 -476 3867 179 85 4 chr13 81493229 81493993 -38250905 + LTR1B LTR ERV1 1 826 0 689 322 31 79 chr13 81493993 81494475 -38250423 + MER34 LTR ERV1 66 521 -21 557 159 8 61 chr13 81494505 81494637 -38250261 - MER74B LTR ERVL -453 169 45 512 284 105 42 chr13 81494797 81495036 -38249862 - MIR SINE MIR 0 262 9 378 305 65 25 chr13 81495643 81495843 -38249055 + L3b LINE CR1 1205 1412 -171 2057 139 3 0 chr13 81496419 81496713 -38248185 - AluSx SINE Alu -17 295 1 821 240 47 12 chr13 81496787 81497045 -38247853 - L1M4 LINE L1 -2060 4086 3820 306 261 45 0 chr13 81497079 81497190 -38247708 - L1ME4a LINE L1 -11 6110 5995 21 36 0 0 chr13 81497308 81497336 -38247562 + AT_rich Low_complexity Low_complexity 1 28 0 302 360 44 0 chr13 81497427 81497563 -38247335 - L1ME4a LINE L1 -392 5729 5588 1178 192 47 0 chr13 81497605 81497839 -38247059 - L1MC1 LINE L1 -6 6327 6083 254 227 79 96 chr13 81498136 81498365 -38246533 - L1M4 LINE L1 -1854 4292 4068 646 71 0 20 chr13 81499012 81499110 -38245788 - AluSg/x SINE Alu 0 310 215 1960 108 0 0 chr13 81499110 81499370 -38245528 - AluSx SINE Alu -52 260 1 182 364 0 0 chr13 81499591 81499657 -38245241 + MIR SINE MIR 2 67 -195 21 0 0 0 chr13 81501174 81501195 -38243703 + AT_rich Low_complexity Low_complexity 1 21 0 335 301 44 29 chr13 81501591 81501727 -38243171 - MIR SINE MIR -76 186 49 24 32 0 0 chr13 81502926 81502957 -38241941 + AT_rich Low_complexity Low_complexity 1 31 0 2301 65 3 10 chr13 81503534 81503843 -38241055 + AluY SINE Alu 1 307 -4 9923 176 35 56 chr13 81503844 81505456 -38239442 - HUERS-P3b LTR ERV1 -1069 6349 4964 2120 135 0 3 chr13 81505456 81505767 -38239131 + AluSg SINE Alu 1 310 0 9923 176 35 56 chr13 81505767 81506924 -38237974 - HUERS-P3b LTR ERV1 -2454 4964 3784 569 101 0 0 chr13 81506925 81507004 -38237894 - LTR9 LTR ERV1 -533 79 1 * 1132 198 75 41 chr13 81507004 81507332 -38237566 + MLT1B LTR MaLR 48 457 0 219 206 44 15 chr13 81507333 81507401 -38237497 + T-rich Low_complexity Low_complexity 2 71 0 816 345 29 23 chr13 81507787 81508172 -38236726 + MLT1I LTR MaLR 13 399 -10 1472 303 7 2 chr13 81508314 81508717 -38236181 + LTR16A LTR ERVL 46 450 0 283 228 22 0 chr13 81508891 81508983 -38235915 + GA-rich Low_complexity Low_complexity 1 94 0 341 333 33 33 chr13 81509225 81509378 -38235520 + MIR3 SINE MIR 33 185 -23 261 203 62 16 chr13 81510462 81510526 -38234372 - MER112 DNA MER1_type -11 249 183 236 151 38 0 chr13 81510739 81510792 -38234106 - MER112 DNA MER1_type -95 165 111 195 184 0 0 chr13 81511019 81511057 -38233841 + (CATA)n Simple_repeat Simple_repeat 1 38 0 228 100 100 0 chr13 81511254 81511294 -38233604 - MER112 DNA MER1_type -34 226 183 246 221 42 42 chr13 81511468 81511563 -38233335 - MER112 DNA MER1_type -64 196 102 1881 144 37 64 chr13 81512015 81512315 -38232583 + THE1B LTR MaLR 1 291 -73 2095 128 44 0 chr13 81512315 81512613 -38232285 - AluSx SINE Alu 0 312 2 1881 144 37 64 chr13 81512613 81512686 -38232212 + THE1B LTR MaLR 291 364 0 270 263 182 10 chr13 81512757 81512856 -38232042 - MIR SINE MIR -79 183 68 211 318 73 36 chr13 81512891 81513001 -38231897 - L2 LINE L2 -6 3266 3153 304 73 0 0 chr13 81513416 81513457 -38231441 + L1MA8 LINE L1 5911 5951 -340 829 188 0 0 chr13 81513461 81513599 -38231299 + FRAM SINE Alu 9 146 -30 180 111 0 0 chr13 81513602 81513629 -38231269 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1447 187 35 14 chr13 81513999 81514446 -38230452 - L1ME LINE L1 -562 5604 5144 1942 152 0 38 chr13 81514722 81515038 -38229860 - AluSx SINE Alu -8 304 1 317 288 0 0 chr13 81515697 81515770 -38229128 + L2 LINE L2 3241 3313 0 1176 242 135 8 chr13 81516055 81516439 -38228459 - L1ME2 LINE L1 -38 6126 5694 3288 201 33 48 chr13 81516448 81517424 -38227474 - L1MD2 LINE L1 -362 5997 5055 666 241 0 0 chr13 81517424 81517557 -38227341 - FLAM_A SINE Alu 0 133 1 3288 201 33 48 chr13 81517557 81518198 -38226700 - L1MD2 LINE L1 -1304 5055 4406 747 273 122 19 chr13 81518556 81518875 -38226023 + MLT1J LTR MaLR 52 403 -108 361 273 117 66 chr13 81518952 81519232 -38225666 - L1ME4a LINE L1 -173 5948 5684 2179 117 3 10 chr13 81519232 81519540 -38225358 + AluSx SINE Alu 1 306 -6 361 273 117 66 chr13 81519540 81519808 -38225090 - L1ME4a LINE L1 -437 5684 5372 26 30 0 0 chr13 81520105 81520138 -38224760 + AT_rich Low_complexity Low_complexity 1 33 0 1087 206 96 40 chr13 81520290 81520644 -38224254 - MLT1A2 LTR MaLR 0 374 1 398 331 24 44 chr13 81522125 81522373 -38222525 - MARNA DNA Mariner -165 421 179 23 33 0 0 chr13 81522895 81522925 -38221973 + AT_rich Low_complexity Low_complexity 1 30 0 1978 143 0 11 chr13 81523052 81523339 -38221559 + AluSx SINE Alu 1 284 -28 10621 96 2 3 chr13 81523341 81525625 -38219273 + L1PA8 LINE L1 3891 6172 0 3768 82 3 52 chr13 81525625 81526186 -38218712 + L1PA13 LINE L1 5601 6144 -19 453 351 107 18 chr13 81526272 81526497 -38218401 - MIR SINE MIR -16 246 2 221 274 0 36 chr13 81527357 81527441 -38217457 + L2 LINE L2 3143 3223 -90 275 284 257 0 chr13 81527505 81527614 -38217284 + L2 LINE L2 3136 3272 0 1700 164 7 30 chr13 81528152 81528457 -38216441 + AluJo SINE Alu 1 298 -14 3166 122 44 4 chr13 81528726 81529228 -38215670 - L1PA16 LINE L1 0 6166 5645 208 167 0 24 chr13 81529770 81529812 -38215086 + A-rich Low_complexity Low_complexity 5 45 0 675 152 24 81 chr13 81530266 81530476 -38214422 + L1MA9 LINE L1 6115 6312 0 253 254 32 0 chr13 81530549 81530612 -38214286 - L2 LINE L2 -11 3302 3238 2207 47 87 0 chr13 81531107 81531384 -38213514 - AluY SINE Alu -10 301 1 233 379 68 10 chr13 81531800 81531903 -38212995 - L2 LINE L2 -26 3246 3138 242 291 133 49 chr13 81532033 81532054 -38212844 + L2 LINE L2 3038 3056 -257 2154 107 0 27 chr13 81532054 81532354 -38212544 - AluSq SINE Alu -10 303 12 242 291 133 49 chr13 81532354 81532535 -38212363 + L2 LINE L2 3056 3257 -56 231 88 0 0 chr13 81532553 81532587 -38212311 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 737 116 0 130 chr13 81533397 81533543 -38211355 + FRAM SINE Alu 38 164 -12 22 56 0 0 chr13 81534269 81534305 -38210593 + AT_rich Low_complexity Low_complexity 1 36 0 266 304 36 45 chr13 81536584 81536696 -38208202 - L2 LINE L2 -25 3247 3137 2590 53 0 0 chr13 81537231 81537533 -38207365 - AluY SINE Alu -9 302 1 2736 170 36 81 chr13 81537893 81538418 -38206480 - L1MA9 LINE L1 -36 6276 5794 6375 118 80 12 chr13 81538418 81539401 -38205497 - Tigger3b DNA MER2_type -1798 1230 156 1533 183 3 50 chr13 81539401 81539701 -38205197 - AluJb SINE Alu -26 286 1 6375 118 80 12 chr13 81539701 81539869 -38205029 - Tigger3b DNA MER2_type -2872 156 1 2736 170 36 81 chr13 81539869 81540101 -38204797 - L1MA9 LINE L1 -518 5794 5553 283 145 29 29 chr13 81540435 81540504 -38204394 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 432 325 8 8 chr13 81540566 81540692 -38204206 + MER5A DNA MER1_type 63 188 -1 321 292 111 15 chr13 81540840 81541045 -38203853 - MIR SINE MIR -33 229 16 817 261 8 71 chr13 81541443 81541711 -38203187 + MIR SINE MIR 8 258 -4 225 0 0 0 chr13 81541922 81541947 -38202951 + (T)n Simple_repeat Simple_repeat 1 25 0 1806 149 32 56 chr13 81542111 81542453 -38202445 + MER1B DNA MER1_type 4 337 0 27 49 0 0 chr13 81542858 81542899 -38201999 + AT_rich Low_complexity Low_complexity 1 41 0 190 258 0 48 chr13 81543913 81543975 -38200923 - MIR SINE MIR -37 225 167 322 351 78 13 chr13 81544113 81544267 -38200631 - MIR SINE MIR -76 186 23 205 280 54 54 chr13 81544633 81544726 -38200172 - L2 LINE L2 -40 3273 3181 3881 262 104 19 chr13 81544880 81546500 -38198398 + L1ME1 LINE L1 37 1794 -4602 196 310 0 0 chr13 81546513 81546571 -38198327 - MIR SINE MIR -52 210 153 2228 260 15 16 chr13 81546616 81547440 -38197458 + L1ME1 LINE L1 3208 4030 -2185 1416 191 8 0 chr13 81547443 81547679 -38197219 + AluJo SINE Alu 1 238 -74 1063 239 81 26 chr13 81547804 81548260 -38196638 + L1ME1 LINE L1 4020 4500 -1715 1027 246 77 70 chr13 81548273 81548728 -38196170 + L1ME1 LINE L1 5772 6229 -6 29 28 0 0 chr13 81548775 81548811 -38196087 + AT_rich Low_complexity Low_complexity 1 36 0 360 277 16 65 chr13 81549359 81549543 -38195355 + MER5B DNA MER1_type 1 175 -3 218 320 9 105 chr13 81549593 81549638 -38195260 + MIR SINE MIR 65 113 -149 702 223 0 58 chr13 81549638 81549826 -38195072 - MER5B DNA MER1_type -1 177 1 218 320 9 105 chr13 81549826 81549999 -38194899 + MIR SINE MIR 113 262 0 312 27 0 0 chr13 81550380 81550417 -38194481 + (TG)n Simple_repeat Simple_repeat 2 38 0 1579 188 34 23 chr13 81551013 81551365 -38193533 - MLT1A1 LTR MaLR 0 365 10 327 270 10 30 chr13 81551372 81551472 -38193426 - MIR SINE MIR -101 161 64 1740 179 0 29 chr13 81551652 81551965 -38192933 - AluJb SINE Alu -8 304 1 209 130 0 43 chr13 81551978 81552024 -38192874 + (TGGGGG)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr13 81552109 81552129 -38192769 + (TTTTC)n Simple_repeat Simple_repeat 5 24 0 2001 112 0 0 chr13 81552134 81552402 -38192496 - AluSq SINE Alu -45 268 1 21 36 0 0 chr13 81553055 81553083 -38191815 + AT_rich Low_complexity Low_complexity 1 28 0 1608 273 144 31 chr13 81553155 81553723 -38191175 - L2 LINE L2 -9 3304 2801 4735 132 68 31 chr13 81553723 81554594 -38190304 + MER4D LTR ERV1 1 903 0 1608 273 144 31 chr13 81554594 81555037 -38189861 - L2 LINE L2 -512 2801 2173 2461 159 39 37 chr13 81555344 81555853 -38189045 - LTR54 LTR ERV1 0 510 1 3791 152 17 17 chr13 81556154 81556864 -38188034 + MER67C LTR ERV1 1 710 0 1114 173 10 0 chr13 81557155 81557352 -38187546 - MLT1B LTR MaLR -19 371 173 868 144 23 46 chr13 81557378 81557552 -38187346 - MLT1B LTR MaLR -211 179 10 417 262 65 83 chr13 81559238 81559467 -38185431 + MLT1K LTR MaLR 185 409 -179 243 0 0 0 chr13 81559511 81559538 -38185360 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 279 0 0 0 chr13 81559537 81559568 -38185330 + (GA)n Simple_repeat Simple_repeat 2 32 0 547 160 34 42 chr13 81559589 81559708 -38185190 + FRAM SINE Alu 51 168 -8 1785 179 0 10 chr13 81560059 81560350 -38184548 - AluJo SINE Alu -24 288 1 494 325 13 26 chr13 81560764 81560918 -38183980 - MER5A DNA MER1_type -1 188 37 348 285 7 99 chr13 81561153 81561304 -38183594 - MIR3 SINE MIR -34 174 38 561 281 54 30 chr13 81561589 81561792 -38183106 - MIR SINE MIR -51 211 4 752 299 96 28 chr13 81561796 81562160 -38182738 + L3 LINE CR1 683 1071 -506 240 263 0 0 chr13 81562979 81563036 -38181862 + CT-rich Low_complexity Low_complexity 5 61 0 195 241 19 19 chr13 81566447 81566501 -38178397 + MER5B DNA MER1_type 4 57 -121 2094 142 0 0 chr13 81566509 81566798 -38178100 + AluSx SINE Alu 1 289 -23 1325 132 164 45 chr13 81566985 81567296 -38177602 - MSTA LTR MaLR -2 426 79 1548 148 8 8 chr13 81567320 81567556 -38177342 - AluJb SINE Alu -76 236 1 1095 168 60 74 chr13 81567782 81568134 -38176764 - Charlie1 DNA MER1_type -7 2754 2408 638 211 0 30 chr13 81568136 81568269 -38176629 - FLAM_A SINE Alu -12 130 2 301 273 0 0 chr13 81568270 81568347 -38176551 - Charlie1 DNA MER1_type -343 2418 2342 225 292 46 0 chr13 81568344 81568409 -38176489 - Charlie1 DNA MER1_type -2690 71 4 * 181 301 212 0 chr13 81569635 81569748 -38175150 - MIR SINE MIR -6 256 120 330 311 106 45 chr13 81570377 81570641 -38174257 + L2 LINE L2 3031 3310 -3 788 288 17 9 chr13 81570661 81570894 -38174004 - MIR SINE MIR 0 262 28 3669 127 20 72 chr13 81570968 81571749 -38173149 - Tigger3(Golem) DNA MER2_type 0 3029 2289 641 213 0 0 chr13 81571739 81571861 -38173037 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 2133 129 114 30 chr13 81572739 81572915 -38171983 + MSTA LTR MaLR 1 161 -267 2302 89 7 0 chr13 81572915 81573207 -38171691 + AluSc SINE Alu 1 294 -15 2133 129 114 30 chr13 81573207 81573425 -38171473 + MSTA LTR MaLR 161 428 0 398 363 42 16 chr13 81573630 81573823 -38171075 - MIR SINE MIR -31 231 34 2106 172 21 5 chr13 81575109 81575493 -38169405 + MLT1B LTR MaLR 1 390 0 225 234 21 16 chr13 81575543 81575656 -38169242 + MER5A DNA MER1_type 9 175 -14 1869 166 3 16 chr13 81575669 81575982 -38168916 - AluJb SINE Alu -3 309 1 345 197 189 49 chr13 81576032 81576154 -38168744 - MLT1J2 LTR MaLR -19 530 392 241 260 10 29 chr13 81576163 81576267 -38168631 - MER113 DNA MER1_type? -247 274 173 398 251 30 30 chr13 81576423 81576590 -38168308 - MER113 DNA MER1_type? -353 168 2 211 305 30 61 chr13 81577419 81577550 -38167348 + L2 LINE L2 3163 3289 -24 306 0 0 0 chr13 81579097 81579131 -38165767 + (CA)n Simple_repeat Simple_repeat 2 35 0 3162 148 16 8 chr13 81579613 81580121 -38164777 + MER41E LTR ERV1 1 512 0 2237 93 3 3 chr13 81580180 81580480 -38164418 + AluSg SINE Alu 1 300 -10 21 0 0 0 chr13 81580612 81580633 -38164265 + AT_rich Low_complexity Low_complexity 1 21 0 467 280 23 8 chr13 81580890 81581022 -38163876 + MLT1I LTR MaLR 246 379 -30 1687 180 0 24 chr13 81581130 81581425 -38163473 + AluJo SINE Alu 1 288 -24 24 53 0 0 chr13 81581681 81581719 -38163179 + AT_rich Low_complexity Low_complexity 1 38 0 307 370 65 0 chr13 81581898 81582052 -38162846 + MIR3 SINE MIR 44 207 -1 398 325 43 0 chr13 81583459 81583576 -38161322 - L2 LINE L2 -15 3257 3136 282 232 32 42 chr13 81583579 81583674 -38161224 - MLT1J1 LTR MaLR 0 446 353 * 830 294 63 33 chr13 81583669 81583972 -38160926 - MLT1J2 LTR MaLR -117 333 22 3735 178 98 45 chr13 81584272 81585192 -38159706 - L1MD2 LINE L1 -32 6327 5359 24 0 0 0 chr13 81585261 81585285 -38159613 + AT_rich Low_complexity Low_complexity 1 24 0 321 330 110 0 chr13 81585487 81585605 -38159293 + L2 LINE L2 3136 3266 -6 353 291 63 29 chr13 81585644 81585819 -38159079 - MIR SINE MIR -18 244 64 650 201 104 0 chr13 81586844 81586998 -38157900 + MER104 DNA Tc2 8 177 -3 24 53 0 0 chr13 81587315 81587353 -38157545 + AT_rich Low_complexity Low_complexity 1 38 0 511 301 24 24 chr13 81587452 81587658 -38157240 + MLT1L LTR MaLR 114 319 -296 368 108 15 0 chr13 81587676 81587741 -38157157 + L1PB3 LINE L1 6088 6153 -1 26 30 0 0 chr13 81587828 81587861 -38157037 + AT_rich Low_complexity Low_complexity 1 33 0 488 273 66 35 chr13 81587897 81588095 -38156803 + MLT1L LTR MaLR 408 611 -4 340 147 53 0 chr13 81589403 81589553 -38155345 + (TA)n Simple_repeat Simple_repeat 2 159 0 25 65 0 0 chr13 81589553 81589599 -38155299 + AT_rich Low_complexity Low_complexity 1 46 0 284 192 13 13 chr13 81589637 81589715 -38155183 + (TA)n Simple_repeat Simple_repeat 1 78 0 201 278 49 90 chr13 81590074 81590218 -38154680 - MIR3 SINE MIR -65 143 6 2235 91 0 0 chr13 81590294 81590590 -38154308 - AluY SINE Alu -13 298 3 222 360 12 0 chr13 81593998 81594084 -38150814 + L2 LINE L2 3227 3313 0 582 265 103 10 chr13 81594259 81594463 -38150435 - MIR SINE MIR -34 228 6 751 52 0 0 chr13 81594524 81594621 -38150277 - L1PA7 LINE L1 -1 6153 6057 180 111 0 0 chr13 81595395 81595422 -38149476 + (CA)n Simple_repeat Simple_repeat 2 28 0 370 188 163 129 chr13 81595718 81595797 -38149101 - MER3 DNA MER1_type 0 209 134 1865 168 0 0 chr13 81595797 81596095 -38148803 + AluJb SINE Alu 1 298 -14 370 188 163 129 chr13 81596095 81596217 -38148681 - MER3 DNA MER1_type -75 134 1 2022 144 0 3 chr13 81597377 81597682 -38147216 + AluSx SINE Alu 1 304 -8 10331 200 44 48 chr13 81598174 81601724 -38143174 + L1MA8 LINE L1 2560 6110 -1455 11740 169 33 26 chr13 81601732 81605004 -38139894 - L1MA4 LINE L1 -4 6296 3002 2241 117 0 0 chr13 81605004 81605302 -38139596 + AluSg SINE Alu 1 298 -12 11740 169 33 26 chr13 81605302 81605438 -38139460 - L1MA4 LINE L1 -3298 3002 2868 3291 171 50 18 chr13 81605436 81605806 -38139092 + L1MA8 LINE L1 6095 6452 -1113 * 2211 138 21 24 chr13 81605806 81606182 -38138716 + THE1C LTR MaLR 1 375 0 3291 171 50 18 chr13 81606182 81606517 -38138381 + L1MA8 LINE L1 6452 6822 -743 1753 174 5 33 chr13 81606537 81606928 -38137970 + L1MA8 LINE L1 7330 7709 -1 2724 176 55 23 chr13 81606950 81607046 -38137852 + L1MC1 LINE L1 5296 5387 -957 1877 120 42 89 chr13 81607046 81607375 -38137523 + THE1B LTR MaLR 1 312 -52 1662 109 0 5 chr13 81607375 81607634 -38137264 + AluSg/x SINE Alu 65 322 0 1877 120 42 89 chr13 81607634 81607685 -38137213 + THE1B LTR MaLR 312 364 0 2724 176 55 23 chr13 81607685 81608149 -38136749 + L1MC1 LINE L1 5387 5874 -470 1327 162 24 54 chr13 81608149 81608446 -38136452 + AluJb SINE Alu 24 311 -1 855 135 70 6 chr13 81608448 81608604 -38136294 + L1MC1 LINE L1 5879 6044 -289 14445 128 26 22 chr13 81608604 81610990 -38133908 + Tigger1 DNA MER2_type 1 2395 -23 1374 199 21 7 chr13 81611014 81611305 -38133593 + L1MC2 LINE L1 6046 6340 -4 2205 140 72 8 chr13 81611638 81612038 -38132860 - MSTB LTR MaLR 0 426 1 220 336 10 10 chr13 81612292 81612396 -38132502 + L3 LINE CR1 564 667 -910 22 35 0 0 chr13 81613042 81613071 -38131827 + AT_rich Low_complexity Low_complexity 1 29 0 647 262 52 0 chr13 81613187 81613359 -38131539 - MER20 DNA MER1_type -1 218 38 260 281 98 0 chr13 81613457 81613539 -38131359 - MIR SINE MIR -117 145 56 424 268 94 0 chr13 81613673 81613811 -38131087 + MER20 DNA MER1_type 38 188 -31 3657 217 46 6 chr13 81614134 81615161 -38129737 + L1MB7 LINE L1 5107 6170 -14 272 219 27 14 chr13 81615180 81615253 -38129645 + L1M4 LINE L1 5186 5259 -887 21 0 0 0 chr13 81615389 81615410 -38129488 + AT_rich Low_complexity Low_complexity 1 21 0 851 326 98 41 chr13 81616985 81617829 -38127069 - L2 LINE L2 -219 3053 2152 591 15 0 0 chr13 81617846 81617914 -38126984 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 590 287 62 88 chr13 81618771 81619024 -38125874 + MIR SINE MIR 3 259 -3 303 319 26 17 chr13 81619448 81619564 -38125334 + L2 LINE L2 3197 3313 0 1608 153 0 71 chr13 81620017 81620325 -38124573 - AluJo SINE Alu -26 286 1 340 251 131 17 chr13 81620557 81620732 -38124166 - MIR SINE MIR -9 253 59 22 0 0 0 chr13 81621412 81621434 -38123464 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr13 81624797 81624831 -38120067 + AT_rich Low_complexity Low_complexity 1 34 0 251 323 83 8 chr13 81627215 81627348 -38117550 - L2 LINE L2 0 3313 3171 230 237 13 0 chr13 81628105 81628181 -38116717 + GA-rich Low_complexity Low_complexity 3 79 0 368 339 107 0 chr13 81631331 81631499 -38113399 - MIR3 SINE MIR -7 201 16 529 323 169 25 chr13 81636208 81636836 -38108062 + L2 LINE L2 2243 2960 -354 21 0 0 0 chr13 81638058 81638079 -38106819 + AT_rich Low_complexity Low_complexity 1 21 0 2149 132 41 8 chr13 81638532 81638895 -38106003 - THE1C LTR MaLR 0 375 1 185 295 148 0 chr13 81639074 81639135 -38105763 - MIR SINE MIR -133 129 60 949 185 26 31 chr13 81639607 81639802 -38105096 + MER20 DNA MER1_type 22 215 -4 203 277 15 31 chr13 81640017 81640082 -38104816 + MIR SINE MIR 27 90 -118 2115 128 0 3 chr13 81640083 81640379 -38104519 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr13 81640379 81640407 -38104491 + AT_rich Low_complexity Low_complexity 1 28 0 285 273 34 11 chr13 81640407 81640495 -38104403 + MIR SINE MIR 76 165 -97 826 282 122 53 chr13 81640636 81641072 -38103826 + MLT1K LTR MaLR 69 534 -54 22 0 0 0 chr13 81641264 81641286 -38103612 + AT_rich Low_complexity Low_complexity 1 22 0 209 125 0 21 chr13 81642749 81642797 -38102101 + (TA)n Simple_repeat Simple_repeat 2 48 0 304 241 0 36 chr13 81642958 81643041 -38101857 + GA-rich Low_complexity Low_complexity 5 84 0 2409 56 0 13 chr13 81643889 81644194 -38100704 + AluY SINE Alu 1 301 -10 1278 241 90 28 chr13 81644460 81644895 -38100003 - MLT1C LTR MaLR 0 467 6 329 335 110 15 chr13 81644932 81645132 -38099766 - MIR SINE MIR -24 238 20 2409 66 3 16 chr13 81645761 81646078 -38098820 - L1PA13 LINE L1 -29 6134 5822 265 244 139 0 chr13 81646979 81647065 -38097833 + MIR SINE MIR 111 208 -54 21 57 0 0 chr13 81647987 81648022 -38096876 + AT_rich Low_complexity Low_complexity 1 35 0 279 54 0 0 chr13 81648135 81648172 -38096726 + (TG)n Simple_repeat Simple_repeat 2 38 0 318 305 38 33 chr13 81648947 81649160 -38095738 + MLT1K LTR MaLR 203 416 -172 722 175 110 0 chr13 81649408 81649562 -38095336 - L1PB4 LINE L1 -12 6144 5974 265 396 39 26 chr13 81650518 81650672 -38094226 - L2 LINE L2 0 3272 3117 238 388 0 0 chr13 81650879 81650959 -38093939 + L2 LINE L2 3193 3272 0 210 219 0 0 chr13 81651041 81651082 -38093816 + L2 LINE L2 3272 3312 -1 264 254 23 17 chr13 81651162 81651335 -38093563 + (TTTAA)n Simple_repeat Simple_repeat 4 177 0 215 227 0 0 chr13 81651457 81651501 -38093397 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 302 257 44 103 chr13 81651777 81651913 -38092985 + MER5A DNA MER1_type 55 182 -7 318 290 30 121 chr13 81652291 81652484 -38092414 + L3b LINE CR1 1271 1421 -162 1613 177 49 3 chr13 81652484 81652772 -38092126 - AluJb SINE Alu -11 301 1 318 290 30 121 chr13 81652772 81652916 -38091982 + L3b LINE CR1 1421 1577 -6 24 0 0 0 chr13 81653399 81653423 -38091475 + AT_rich Low_complexity Low_complexity 1 24 0 391 259 44 57 chr13 81654248 81654406 -38090492 + L2 LINE L2 3158 3313 0 250 333 111 0 chr13 81655319 81655427 -38089471 - MIR3 SINE MIR -31 177 58 24 32 0 0 chr13 81656071 81656102 -38088796 + AT_rich Low_complexity Low_complexity 1 31 0 238 206 68 41 chr13 81658235 81658308 -38086590 - MIR3 SINE MIR -13 195 121 305 94 189 0 chr13 81659090 81659143 -38085755 - MLT1B LTR MaLR -2 388 326 929 115 42 31 chr13 81659153 81659344 -38085554 - L1MA7 LINE L1 -1 6290 6098 2596 55 6 0 chr13 81659365 81659691 -38085207 - L1PA7 LINE L1 -13 6141 5814 3772 68 70 19 chr13 81659691 81660228 -38084670 - L1PA6 LINE L1 0 6154 5586 1374 169 16 4 chr13 81660228 81660470 -38084428 - L1MA7 LINE L1 -200 6091 5847 1295 191 34 87 chr13 81660471 81660828 -38084070 - MLT1B LTR MaLR -52 338 1 231 217 0 0 chr13 81660911 81660971 -38083927 + (TG)n Simple_repeat Simple_repeat 1 60 0 1854 163 67 3 chr13 81661150 81661493 -38083405 - MLT1A1 LTR MaLR 0 365 1 378 0 0 0 chr13 81661525 81661567 -38083331 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1961 127 0 0 chr13 81661572 81661847 -38083051 - AluSx SINE Alu -37 275 1 25 0 0 0 chr13 81662025 81662050 -38082848 + AT_rich Low_complexity Low_complexity 1 25 0 1606 202 29 47 chr13 81664265 81664646 -38080252 - MLT1B LTR MaLR -16 374 1 251 378 115 14 chr13 81665399 81665547 -38079351 - L2 LINE L2 -7 3265 3103 216 349 38 38 chr13 81665713 81665819 -38079079 + L2 LINE L2 3118 3223 -49 23 0 0 0 chr13 81666359 81666382 -38078516 + AT_rich Low_complexity Low_complexity 1 23 0 1727 180 7 0 chr13 81666588 81666871 -38078027 - AluJb SINE Alu -27 285 1 281 376 37 9 chr13 81668070 81668179 -38076719 + L2 LINE L2 3160 3271 -1 21 0 0 0 chr13 81668684 81668705 -38076193 + AT_rich Low_complexity Low_complexity 1 21 0 193 392 14 0 chr13 81668892 81668966 -38075932 + MIR SINE MIR 35 109 -99 680 144 9 162 chr13 81669356 81669578 -38075320 + MER5A DNA MER1_type 2 189 0 216 0 0 0 chr13 81670489 81670513 -38074385 + (T)n Simple_repeat Simple_repeat 1 24 0 2797 16 0 0 chr13 81671136 81671445 -38073453 + AluYa8 SINE Alu 1 309 -1 24 32 0 0 chr13 81672942 81672973 -38071925 + AT_rich Low_complexity Low_complexity 1 31 0 4117 238 208 28 chr13 81673564 81676178 -38068720 + L1M3e LINE L1 2 2779 -4327 42336 55 2 1 chr13 81676203 81682341 -38062557 - L1PA4 LINE L1 -5 6150 2 1185 237 63 26 chr13 81682343 81682997 -38061901 + L1M3e LINE L1 2770 3445 -3661 202 316 0 0 chr13 81683651 81683706 -38061192 - MIR3 SINE MIR -1 207 153 344 349 33 7 chr13 81683706 81683858 -38061040 + MER5B DNA MER1_type 1 156 -22 225 320 148 8 chr13 81683868 81683990 -38060908 - MIR3 SINE MIR -48 160 22 401 250 42 28 chr13 81683998 81684142 -38060756 + MER117 DNA MER1_type 2 147 -50 941 242 77 13 chr13 81684561 81684859 -38060039 - MER5C DNA MER1_type -6 318 2 814 254 29 0 chr13 81685327 81685536 -38059362 - MER58C DNA MER1_type 0 215 1 1235 249 105 42 chr13 81685589 81686092 -38058806 - MLT1F LTR MaLR -2 540 6 586 274 51 0 chr13 81686442 81686599 -38058299 - MIR SINE MIR -70 192 28 8217 127 16 11 chr13 81687168 81688502 -38056396 + L1P LINE L1 1 1341 -4805 225 0 0 0 chr13 81688521 81688546 -38056352 + (T)n Simple_repeat Simple_repeat 1 25 0 276 116 0 0 chr13 81689424 81689467 -38055431 - MADE1 DNA Mariner -37 43 1 189 0 0 0 chr13 81692880 81692901 -38051997 + (A)n Simple_repeat Simple_repeat 1 21 0 460 354 31 10 chr13 81693390 81693582 -38051316 - L3 LINE CR1 -13 1564 1369 266 253 280 13 chr13 81694002 81694152 -38050746 - L2 LINE L2 0 3313 3124 520 354 94 20 chr13 81694497 81694955 -38049943 - L2 LINE L2 -700 2614 2123 1786 159 73 98 chr13 81695353 81695590 -38049308 + MLT1C LTR MaLR 1 242 -225 2458 87 3 0 chr13 81695590 81695899 -38048999 + AluSg SINE Alu 1 310 0 1786 159 73 98 chr13 81695899 81695951 -38048947 + MLT1C LTR MaLR 242 294 -173 224 0 0 61 chr13 81695951 81695984 -38048914 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1786 159 73 98 chr13 81695984 81696172 -38048726 + MLT1C LTR MaLR 294 467 0 1312 247 45 24 chr13 81696595 81696971 -38047927 - MLT1E LTR MaLR 0 593 210 4539 193 93 119 chr13 81697036 81698838 -38046060 - MER52A LTR ERV1 0 1755 1 453 273 28 14 chr13 81698838 81698980 -38045918 - MLT1E LTR MaLR -449 144 1 1955 181 86 34 chr13 81699267 81699743 -38045155 - MLT1D LTR MaLR 0 505 5 1031 39 0 0 chr13 81699976 81700105 -38044793 + L1PA4 LINE L1 6027 6155 0 21 36 0 0 chr13 81700313 81700341 -38044557 + AT_rich Low_complexity Low_complexity 1 28 0 210 139 0 47 chr13 81700348 81700391 -38044507 + (TAAAAA)n Simple_repeat Simple_repeat 6 46 0 213 94 0 0 chr13 81701711 81701743 -38043155 + (TG)n Simple_repeat Simple_repeat 2 33 0 1018 231 74 83 chr13 81702117 81702645 -38042253 + LTR33A LTR ERVL 1 523 0 2174 124 0 13 chr13 81703831 81704146 -38040752 - AluSx SINE Alu -1 311 1 185 338 108 61 chr13 81704475 81704883 -38040015 - L2 LINE L2 -338 2976 2550 662 360 136 8 chr13 81705097 81705567 -38039331 - L3 LINE CR1 -5 1572 1043 21 36 0 0 chr13 81705831 81705859 -38039039 + AT_rich Low_complexity Low_complexity 1 28 0 642 194 31 0 chr13 81707159 81707288 -38037610 - MER20 DNA MER1_type 0 219 87 548 262 49 6 chr13 81707293 81707457 -38037441 + MIR SINE MIR 88 258 -4 2435 99 0 0 chr13 81707965 81708278 -38036620 + AluSq SINE Alu 1 313 0 1198 219 151 6 chr13 81708706 81709025 -38035873 + MLT1A1 LTR MaLR 1 365 0 494 300 62 48 chr13 81711386 81711613 -38033285 + MIR SINE MIR 8 237 -25 2465 168 37 51 chr13 81711893 81712160 -38032738 + L1MB7 LINE L1 5472 5741 -443 1669 163 34 34 chr13 81712160 81712454 -38032444 + AluJb SINE Alu 1 294 -18 2465 168 37 51 chr13 81712454 81712810 -38032088 + L1MB7 LINE L1 5741 6086 -98 761 166 155 5 chr13 81712809 81713002 -38031896 + L1MB7 LINE L1 5547 5768 -416 * 322 217 11 0 chr13 81713011 81713103 -38031795 + L1MB7 LINE L1 6092 6184 0 21 82 0 0 chr13 81713186 81713235 -38031663 + AT_rich Low_complexity Low_complexity 1 49 0 277 250 111 19 chr13 81713354 81713462 -38031436 - MIR SINE MIR -85 177 60 * 321 338 174 35 chr13 81713458 81713798 -38031100 + L2 LINE L2 2882 3268 -4 42 36 0 0 chr13 81714107 81714163 -38030735 + AT_rich Low_complexity Low_complexity 1 56 0 3514 207 44 10 chr13 81714811 81715569 -38029329 - L1MB7 LINE L1 -13 6171 5338 2248 110 7 0 chr13 81715569 81715869 -38029029 - AluSc SINE Alu -7 302 1 3514 207 44 10 chr13 81715869 81716509 -38028389 - L1MB7 LINE L1 -846 5338 4721 1496 177 97 26 chr13 81716659 81716939 -38027959 + THE1C LTR MaLR 1 312 -63 2651 110 0 0 chr13 81716939 81717303 -38027595 - THE1B LTR MaLR 0 364 1 1496 177 97 26 chr13 81717303 81717372 -38027526 + THE1C LTR MaLR 312 375 0 22 0 0 0 chr13 81717761 81717783 -38027115 + AT_rich Low_complexity Low_complexity 1 22 0 633 303 16 16 chr13 81719249 81719437 -38025461 + MER5A DNA MER1_type 1 188 -1 5049 138 18 0 chr13 81721834 81722668 -38022230 - Tigger1 DNA MER2_type -4 2414 1566 3408 231 31 6 chr13 81722773 81723853 -38021045 + L1M4 LINE L1 2636 3743 -2403 2105 268 80 19 chr13 81723873 81724986 -38019912 + L1MEc LINE L1 1204 2384 -4012 5689 118 21 2 chr13 81725413 81726991 -38017907 + L1PA15 LINE L1 4541 6156 -9 237 220 0 0 chr13 81728456 81728506 -38016392 + (TG)n Simple_repeat Simple_repeat 2 51 0 2329 116 0 0 chr13 81729226 81729537 -38015361 + AluSx SINE Alu 1 311 -1 1279 202 102 3 chr13 81729698 81730240 -38014658 + MLT1E1 LTR MaLR 1 654 0 232 353 59 0 chr13 81730295 81730397 -38014501 + L2 LINE L2 3163 3270 -2 2382 84 0 0 chr13 81732421 81732758 -38012140 + AluY SINE Alu 3 339 0 641 231 123 30 chr13 81735559 81735827 -38009071 + MLT1A2 LTR MaLR 4 296 -78 352 189 0 14 chr13 81735928 81736002 -38008896 + MLT1A2 LTR MaLR 302 374 0 284 332 47 25 chr13 81736002 81736237 -38008661 + L2 LINE L2 1343 1582 -1732 559 322 104 44 chr13 81736240 81736778 -38008120 + L2 LINE L2 2714 3280 -33 513 369 30 18 chr13 81736812 81737251 -38007647 + L2 LINE L2 1615 2058 -1256 1945 141 47 0 chr13 81737465 81737763 -38007135 + AluJb SINE Alu 1 312 0 677 291 62 16 chr13 81737952 81738196 -38006702 + MIR SINE MIR 5 259 -3 2136 141 110 11 chr13 81738473 81738927 -38005971 - L1MA9 LINE L1 0 6312 5814 203 229 0 0 chr13 81738930 81738965 -38005933 + (CA)n Simple_repeat Simple_repeat 2 36 0 275 203 14 0 chr13 81738998 81739067 -38005831 + (TA)n Simple_repeat Simple_repeat 2 71 0 6209 163 51 79 chr13 81739197 81739594 -38005304 - L1MA9 LINE L1 -509 5782 5375 5731 130 71 64 chr13 81739594 81740814 -38004084 + Tigger3b DNA MER2_type 3 1231 0 6209 163 51 79 chr13 81740814 81740850 -38004048 - L1MA9 LINE L1 -916 5375 5339 1172 204 30 114 chr13 81740850 81741246 -38003652 - MLT1A1 LTR MaLR 0 365 3 6209 163 51 79 chr13 81741246 81743042 -38001856 - L1MA9 LINE L1 -952 5339 3600 386 354 5 26 chr13 81743050 81743242 -38001656 + L2 LINE L2 2579 2766 -548 313 289 163 7 chr13 81743369 81743504 -38001394 + L2 LINE L2 2941 3096 -176 23 0 0 0 chr13 81743709 81743732 -38001166 + AT_rich Low_complexity Low_complexity 1 23 0 2476 122 6 0 chr13 81743924 81744286 -38000612 + THE1B LTR MaLR 1 364 0 2258 144 14 0 chr13 81744415 81744777 -38000121 - L1PA15 LINE L1 -8 6157 5791 355 286 38 0 chr13 81745000 81745133 -37999765 - MER112 DNA MER1_type -6 254 117 1029 224 36 18 chr13 81745328 81745547 -37999351 + AluJo SINE Alu 22 244 -68 2648 102 44 5 chr13 81746991 81747401 -37997497 - MER57B LTR ERV1 -8 426 1 557 205 139 6 chr13 81747613 81747779 -37997119 + MER53 DNA DNA 1 188 -1 7423 29 11 0 chr13 81748269 81749371 -37995527 - L1PA3 LINE L1 -2 6153 5044 5749 29 4 0 chr13 81749382 81750108 -37994790 + L1PA3 LINE L1 4286 5014 -1132 363 306 106 17 chr13 81750257 81750437 -37994461 - MIR SINE MIR -47 215 20 3473 161 13 17 chr13 81751174 81752166 -37992732 + L1MA7 LINE L1 4712 5701 -590 1006 208 48 63 chr13 81752169 81752501 -37992397 - LTR40c LTR ERVL -138 327 1 514 283 30 74 chr13 81752502 81752531 -37992367 - MIR SINE MIR -37 225 196 2460 67 0 0 chr13 81752531 81752828 -37992070 + AluY SINE Alu 3 299 -12 514 283 30 74 chr13 81752828 81753028 -37991870 - MIR SINE MIR -66 196 6 22 0 0 0 chr13 81753229 81753251 -37991647 + GC_rich Low_complexity Low_complexity 1 22 0 6542 32 1 0 chr13 81753416 81754229 -37990669 - L1PA4 LINE L1 0 6155 5342 1730 26 0 0 chr13 81754229 81754456 -37990442 + L1PA4 LINE L1 5107 5333 -813 408 145 84 12 chr13 81754535 81754618 -37990280 + L1MA7 LINE L1 6004 6092 -199 388 163 47 0 chr13 81754620 81754706 -37990192 + L1MA9 LINE L1 6215 6304 -8 239 344 30 38 chr13 81754918 81755049 -37989849 + L2 LINE L2 3123 3252 -20 184 329 50 71 chr13 81760334 81760474 -37984424 + L2 LINE L2 2924 3060 -212 233 365 0 31 chr13 81761397 81761493 -37983405 - L2 LINE L2 -221 3051 2959 473 293 45 23 chr13 81761935 81762068 -37982830 - MER91A DNA MER1_type -8 188 53 27 62 0 0 chr13 81762630 81762678 -37982220 + AT_rich Low_complexity Low_complexity 1 48 0 1227 208 101 46 chr13 81764683 81765121 -37979777 + MLT1C LTR MaLR 6 467 0 261 309 41 10 chr13 81765141 81765238 -37979660 + L2 LINE L2 2220 2319 -995 230 105 0 26 chr13 81765240 81765278 -37979620 - MLT2C2 LTR ERVL -2 462 426 1712 189 86 5 chr13 81765333 81765715 -37979183 - MLT2C2 LTR ERVL -51 413 1 432 306 184 10 chr13 81765718 81766006 -37978892 + L2 LINE L2 2318 2655 -659 887 218 26 127 chr13 81766043 81766266 -37978632 - MLT1A2 LTR MaLR 0 467 223 2211 119 13 0 chr13 81766266 81766569 -37978329 - AluSq SINE Alu -6 307 1 887 218 26 127 chr13 81766569 81766655 -37978243 - MLT1A2 LTR MaLR -244 223 130 1806 124 82 11 chr13 81766655 81766937 -37977961 - AluSg SINE Alu -8 302 1 887 218 26 127 chr13 81766937 81767043 -37977855 - MLT1A2 LTR MaLR -337 130 1 1414 223 25 0 chr13 81767383 81767665 -37977233 + AluJo SINE Alu 10 298 -14 330 312 70 26 chr13 81768062 81768598 -37976300 + L1MEd LINE L1 780 1370 -4912 238 272 26 18 chr13 81768720 81768834 -37976064 + L1MEd LINE L1 1437 1551 -4578 245 281 97 9 chr13 81768984 81769098 -37975800 + L2 LINE L2 2973 3096 -217 329 263 0 0 chr13 81769787 81769863 -37975035 - MIR SINE MIR -75 133 58 1062 208 19 19 chr13 81770158 81770374 -37974524 + MER20 DNA MER1_type 3 218 -1 411 271 33 79 chr13 81770570 81770784 -37974114 + L1ME3A LINE L1 5962 6165 -5 219 36 0 0 chr13 81771023 81771051 -37973847 + (CA)n Simple_repeat Simple_repeat 1 28 0 17645 81 4 3 chr13 81771235 81774624 -37970274 - L1PA7 LINE L1 -20 6449 3061 1698 148 0 45 chr13 81774625 81774936 -37969962 - L1PA7 LINE L1 -6158 303 7 876 244 202 68 chr13 81774982 81775779 -37969119 - HAL1 LINE L1 -112 2395 1445 2156 126 0 0 chr13 81775779 81776072 -37968826 - AluSx SINE Alu -19 293 1 876 244 202 68 chr13 81776072 81776238 -37968660 - HAL1 LINE L1 -1062 1445 1303 362 266 142 41 chr13 81776325 81776494 -37968404 - HAL1 LINE L1 -1361 1146 961 360 310 153 23 chr13 81776526 81776742 -37968156 - HAL1 LINE L1 -1607 900 657 14210 141 24 6 chr13 81777192 81779568 -37965330 - Tigger1 DNA MER2_type 0 2418 1 231 309 46 40 chr13 81779651 81779803 -37965095 - HAL1 LINE L1 -2341 166 14 380 311 0 0 chr13 81779998 81780104 -37964794 - L2 LINE L2 -1374 1940 1835 303 150 0 0 chr13 81781751 81781811 -37963087 + (GA)n Simple_repeat Simple_repeat 1 60 0 204 111 0 0 chr13 81781968 81782004 -37962894 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 396 271 143 0 chr13 81782142 81782275 -37962623 + MIR SINE MIR 105 256 -6 517 318 7 0 chr13 81782457 81782611 -37962287 + MIR SINE MIR 108 262 0 25 0 0 0 chr13 81782686 81782711 -37962187 + AT_rich Low_complexity Low_complexity 1 25 0 312 347 47 7 chr13 81782833 81782983 -37961915 - L2 LINE L2 0 3313 3158 200 364 71 20 chr13 81783081 81783180 -37961718 - L2 LINE L2 0 3313 3210 194 362 43 0 chr13 81783487 81783556 -37961342 + L2 LINE L2 3193 3264 -8 23 0 0 0 chr13 81783812 81783835 -37961063 + AT_rich Low_complexity Low_complexity 1 23 0 480 279 124 42 chr13 81785323 81785653 -37959245 - Charlie8 DNA MER1_type -1941 476 120 200 210 42 7 chr13 81785679 81785822 -37959076 + (TA)n Simple_repeat Simple_repeat 2 149 0 217 292 73 44 chr13 81786064 81786201 -37958697 + L2 LINE L2 2864 3004 -268 817 208 83 0 chr13 81786316 81786484 -37958414 - MER5A DNA MER1_type -7 182 1 2359 135 57 26 chr13 81786590 81787107 -37957791 - MLT2A2 LTR ERVL -1 553 1 775 317 152 10 chr13 81787920 81788579 -37956319 - L2 LINE L2 -8 3305 2556 189 400 0 0 chr13 81789365 81789480 -37955418 - L2 LINE L2 -2493 821 707 556 318 63 12 chr13 81789507 81789762 -37955136 + L2 LINE L2 1239 1506 -1808 189 348 121 19 chr13 81789775 81789982 -37954916 + L2 LINE L2 1726 1953 -1361 326 273 55 18 chr13 81790036 81790146 -37954752 + L1ME LINE L1 20 133 -5937 395 298 84 28 chr13 81790633 81790811 -37954087 + L1ME LINE L1 272 459 -5611 592 288 38 75 chr13 81790857 81791309 -37953589 + L1ME LINE L1 407 841 -5229 182 338 133 82 chr13 81791531 81792378 -37952520 + L2 LINE L2 1789 2679 -635 523 298 102 37 chr13 81792668 81792913 -37951985 - MIR SINE MIR -1 261 1 2436 74 0 16 chr13 81792985 81793296 -37951602 + AluY SINE Alu 3 308 -3 307 338 50 91 chr13 81793335 81793554 -37951344 + L2 LINE L2 3054 3263 -9 505 291 74 16 chr13 81794160 81794349 -37950549 + MLT1I LTR MaLR 19 218 -191 475 222 20 0 chr13 81794380 81794479 -37950419 + MLT1I LTR MaLR 309 409 0 330 132 0 0 chr13 81795036 81795089 -37949809 + (TG)n Simple_repeat Simple_repeat 2 54 0 208 217 33 0 chr13 81795089 81795149 -37949749 + (TA)n Simple_repeat Simple_repeat 2 63 0 183 80 0 0 chr13 81795408 81795433 -37949465 + (T)n Simple_repeat Simple_repeat 1 25 0 186 224 20 20 chr13 81795752 81795801 -37949097 + L2 LINE L2 3182 3230 -83 445 231 23 163 chr13 81795884 81796191 -37948707 + Charlie8 DNA MER1_type 1 264 -2153 2097 126 0 22 chr13 81797258 81797575 -37947323 + AluSx SINE Alu 1 310 -2 432 332 98 19 chr13 81797703 81798079 -37946819 - L1M4 LINE L1 -749 5397 4992 1601 94 0 9 chr13 81798496 81798709 -37946189 + AluSg/x SINE Alu 80 290 -20 272 331 99 7 chr13 81798900 81799042 -37945856 - MIR SINE MIR 0 262 108 2048 124 7 3 chr13 81799189 81799479 -37945419 - AluSx SINE Alu -21 291 1 2136 118 3 0 chr13 81803488 81803776 -37941122 + AluSx SINE Alu 3 291 -21 2741 221 176 11 chr13 81803793 81804734 -37940164 + L1MC4 LINE L1 6945 8041 -1 1333 138 78 143 chr13 81806243 81806614 -37938284 + MER7A DNA MER2_type 1 345 -1 260 267 11 56 chr13 81806832 81806922 -37937976 + MIR SINE MIR 80 165 -97 349 284 29 0 chr13 81807868 81807970 -37936928 + MIR SINE MIR 73 177 -85 209 136 0 23 chr13 81808501 81808545 -37936353 + (TTATA)n Simple_repeat Simple_repeat 4 46 0 372 186 0 14 chr13 81812264 81812334 -37932564 - MIR SINE MIR -32 230 162 1987 126 75 29 chr13 81812339 81812687 -37932211 + THE1B LTR MaLR 1 364 0 5519 102 4 0 chr13 81812687 81813438 -37931460 + THE1B-int LTR MaLR 1 754 -826 490 148 13 1 chr13 81813438 81813524 -37931374 + THE1C LTR MaLR 279 375 0 680 182 108 7 chr13 81813525 81813673 -37931225 - MIR SINE MIR -94 168 6 514 214 23 30 chr13 81813865 81813996 -37930902 + MER94 DNA DNA 5 134 0 23 0 0 0 chr13 81815978 81816001 -37928897 + AT_rich Low_complexity Low_complexity 1 23 0 1554 251 46 87 chr13 81816245 81817107 -37927791 + HAL1 LINE L1 916 1742 -765 389 280 20 0 chr13 81817132 81817232 -37927666 - MER94 DNA DNA 0 134 33 333 316 8 34 chr13 81817867 81817984 -37926914 + MIR SINE MIR 25 138 -124 221 171 0 0 chr13 81818636 81818677 -37926221 + T-rich Low_complexity Low_complexity 1 41 0 2198 109 0 7 chr13 81820800 81821102 -37923796 + AluSq SINE Alu 11 310 -3 184 326 53 21 chr13 81821552 81821647 -37923251 + MIR SINE MIR 34 131 -77 23 0 0 0 chr13 81821725 81821748 -37923150 + AT_rich Low_complexity Low_complexity 1 23 0 37 0 0 0 chr13 81823206 81823243 -37921655 + AT_rich Low_complexity Low_complexity 1 37 0 353 209 23 0 chr13 81823965 81824051 -37920847 - MER103 DNA DNA -7 159 72 24 53 0 0 chr13 81824058 81824096 -37920802 + AT_rich Low_complexity Low_complexity 1 38 0 764 126 45 0 chr13 81825688 81825799 -37919099 + AluJb SINE Alu 5 120 -192 24 0 0 0 chr13 81826731 81826755 -37918143 + AT_rich Low_complexity Low_complexity 1 24 0 371 311 34 0 chr13 81827121 81827240 -37917658 + MIR SINE MIR 137 259 -3 183 100 0 0 chr13 81827517 81827547 -37917351 + (A)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr13 81827854 81827886 -37917012 + AT_rich Low_complexity Low_complexity 1 32 0 2207 149 5 29 chr13 81828689 81829071 -37915827 - THE1C LTR MaLR 0 375 3 332 264 85 0 chr13 81830403 81830509 -37914389 + L1ME2 LINE L1 6039 6153 -11 197 33 33 0 chr13 81831074 81831104 -37913794 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 13759 207 29 20 chr13 81831105 81832974 -37911924 - L1PA16 LINE L1 -8 6861 5009 3052 36 0 0 chr13 81832974 81833339 -37911559 - L1PA4 LINE L1 -2 6153 5789 13759 207 29 20 chr13 81833339 81834861 -37910037 - L1PA16 LINE L1 -1860 5009 3502 3064 73 54 5 chr13 81834861 81835284 -37909614 + MLT2A1 LTR ERVL 1 444 0 13759 207 29 20 chr13 81835284 81836817 -37908081 - L1PA16 LINE L1 -3367 3502 1864 7514 39 1 0 chr13 81836814 81838391 -37906507 - L1PA4 LINE L1 -2 6153 4576 * 5791 194 8 30 chr13 81838395 81840148 -37904750 - L1PA16 LINE L1 -5019 1830 15 3954 104 6 49 chr13 81840732 81841387 -37903511 + L1PA13 LINE L1 5533 6159 -4 599 211 79 0 chr13 81841398 81841512 -37903386 + FLAM_C SINE Alu 1 123 -20 26 30 0 0 chr13 81841514 81841547 -37903351 + AT_rich Low_complexity Low_complexity 1 33 0 1284 232 40 16 chr13 81843659 81844034 -37900864 + L1ME3A LINE L1 5781 6164 -6 192 135 0 0 chr13 81844336 81844373 -37900525 + (TG)n Simple_repeat Simple_repeat 2 38 0 326 189 200 11 chr13 81844687 81844782 -37900116 + MER5C DNA MER1_type 12 124 -200 258 228 0 98 chr13 81844810 81844902 -37899996 + MER5C DNA MER1_type 233 315 -9 3032 123 84 24 chr13 81846241 81846738 -37898160 - MER1A DNA MER1_type 0 527 1 538 232 141 17 chr13 81846988 81847165 -37897733 + MIR SINE MIR 51 249 -13 25 0 0 0 chr13 81847464 81847489 -37897409 + AT_rich Low_complexity Low_complexity 1 25 0 722 269 70 12 chr13 81849126 81849368 -37895530 - MIR SINE MIR -4 258 3 554 296 95 38 chr13 81850131 81850448 -37894450 + L1ME LINE L1 5484 5818 -303 201 179 131 83 chr13 81850641 81850725 -37894173 - MIR SINE MIR -96 166 79 292 220 90 20 chr13 81851172 81851272 -37893626 - MLT1L LTR MaLR -505 110 4 1776 213 5 11 chr13 81852144 81852511 -37892387 + MLT1A1 LTR MaLR 1 365 0 182 333 29 14 chr13 81853114 81853183 -37891715 + L3 LINE CR1 1293 1362 -215 2472 66 3 0 chr13 81853347 81853664 -37891234 - L1PA6 LINE L1 0 6154 5837 284 241 13 0 chr13 81853800 81853879 -37891019 + MER5A DNA MER1_type 9 88 -101 180 203 34 17 chr13 81853830 81853889 -37891009 - MER5A DNA MER1_type -27 162 103 * 2750 173 39 10 chr13 81854136 81854789 -37890109 + MER67C LTR ERV1 1 709 -1 221 184 23 23 chr13 81854861 81854898 -37890000 + CT-rich Low_complexity Low_complexity 4 40 -50 2135 122 7 3 chr13 81854898 81855202 -37889696 - AluSx SINE Alu -7 305 1 221 184 23 23 chr13 81855202 81855251 -37889647 + CT-rich Low_complexity Low_complexity 39 90 0 207 0 0 0 chr13 81858140 81858163 -37886735 + (GA)n Simple_repeat Simple_repeat 1 23 0 191 268 24 49 chr13 81858199 81858281 -37886617 - MIR3 SINE MIR -5 203 124 2518 58 0 6 chr13 81858674 81858985 -37885913 + AluY SINE Alu 1 309 -2 1256 224 46 46 chr13 81859467 81859837 -37885061 - MLT1A2 LTR MaLR -4 370 1 367 335 24 29 chr13 81859839 81860009 -37884889 + MIR SINE MIR 79 247 -15 254 266 37 0 chr13 81860818 81860927 -37883971 - L1ME4a LINE L1 -2 6119 6007 425 324 9 0 chr13 81861258 81861366 -37883532 - L2 LINE L2 -3 3269 3161 200 57 0 29 chr13 81862016 81862051 -37882847 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 1053 182 32 0 chr13 81862052 81862239 -37882659 - AluJo SINE Alu -26 286 94 2270 123 0 0 chr13 81862814 81863115 -37881783 + AluSx SINE Alu 1 301 -11 342 0 0 0 chr13 81863115 81863153 -37881745 + (TA)n Simple_repeat Simple_repeat 2 39 0 241 243 243 0 chr13 81863171 81863278 -37881620 + L1MC5 LINE L1 7757 7889 -72 208 325 0 12 chr13 81863673 81863753 -37881145 + GA-rich Low_complexity Low_complexity 2 80 0 2226 100 0 50 chr13 81864052 81864373 -37880525 - AluSg SINE Alu -5 305 1 226 317 6 116 chr13 81864471 81864635 -37880263 - MIR SINE MIR -58 204 59 236 313 15 0 chr13 81865110 81865177 -37879721 - L2 LINE L2 -21 3251 3184 229 244 0 0 chr13 81865177 81865222 -37879676 + A-rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr13 81865532 81865567 -37879331 + AT_rich Low_complexity Low_complexity 1 35 0 276 237 17 0 chr13 81866922 81866981 -37877917 + L2 LINE L2 3254 3313 0 2354 79 0 16 chr13 81867300 81867616 -37877282 - AluY SINE Alu 0 311 1 352 131 16 0 chr13 81867617 81867678 -37877220 - AluSc SINE Alu -5 294 233 4082 115 99 95 chr13 81867678 81869049 -37875849 + pTR5 LTR ERV1 743 2438 0 754 213 26 142 chr13 81869050 81869318 -37875580 - AluSp SINE Alu -73 240 4 1357 273 106 41 chr13 81869562 81870468 -37874430 + L1ME LINE L1 20 984 -5086 2699 145 22 97 chr13 81870469 81871111 -37873787 + L1MA4 LINE L1 5531 6124 -176 374 109 31 0 chr13 81871111 81871175 -37873723 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 353 292 0 0 chr13 81871175 81871264 -37873634 - L1MC4 LINE L1 -1339 6703 6615 353 289 0 0 chr13 81871193 81871283 -37873615 + L1MC4 LINE L1 6614 6703 -1339 267 152 0 0 chr13 81871283 81871329 -37873569 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 524 230 22 0 chr13 81871329 81871468 -37873430 + L1MA4 LINE L1 6138 6279 -21 329 239 57 52 chr13 81871477 81871767 -37873131 + L1ME LINE L1 966 1257 -4823 21 82 0 0 chr13 81872692 81872741 -37872157 + AT_rich Low_complexity Low_complexity 1 49 0 402 138 0 96 chr13 81874130 81874192 -37870706 - L1MB1 LINE L1 -28 6161 6109 3152 113 90 8 chr13 81874192 81874679 -37870219 - MER1A DNA MER1_type 0 527 1 402 138 0 96 chr13 81874679 81874710 -37870188 - L1MB1 LINE L1 -80 6109 6077 804 160 10 62 chr13 81874714 81874908 -37869990 + L1MA10 LINE L1 6141 6324 -10 338 316 53 13 chr13 81875054 81875206 -37869692 - MIR3 SINE MIR -9 199 42 307 167 19 0 chr13 81875220 81875274 -37869624 - MER92B LTR ERV1 -578 58 4 476 221 53 9 chr13 81877410 81877523 -37867375 - MER5B DNA MER1_type -60 118 1 214 200 0 0 chr13 81877830 81877870 -37867028 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 447 246 18 18 chr13 81877955 81878069 -37866829 - MLT1H LTR MaLR 0 549 436 216 200 0 0 chr13 81878207 81878252 -37866646 + A-rich Low_complexity Low_complexity 1 45 0 2047 97 19 48 chr13 81878682 81878993 -37865905 - AluSx SINE Alu -7 305 4 22 56 0 0 chr13 81879342 81879378 -37865520 + AT_rich Low_complexity Low_complexity 1 36 0 286 346 65 9 chr13 81879504 81879611 -37865287 - L2 LINE L2 -44 3228 3116 27 73 0 0 chr13 81880012 81880067 -37864831 + AT_rich Low_complexity Low_complexity 1 55 0 241 386 124 4 chr13 81881214 81881447 -37863451 - L2 LINE L2 -337 2977 2717 2394 177 75 4 chr13 81881945 81882425 -37862473 - MER67D LTR ERV1 0 514 1 587 325 31 28 chr13 81882999 81883254 -37861644 - MIR SINE MIR -1 261 6 193 333 56 56 chr13 81883492 81883600 -37861298 - L2 LINE L2 -12 3260 3153 353 226 0 0 chr13 81883624 81883708 -37861190 + MER113 DNA MER1_type? 28 111 -410 519 207 0 93 chr13 81884147 81884297 -37860601 - MIR SINE MIR -65 197 62 236 304 0 0 chr13 81884510 81884579 -37860319 + CT-rich Low_complexity Low_complexity 1 69 0 241 277 25 88 chr13 81884594 81884753 -37860145 + L2 LINE L2 2733 2881 -433 224 347 148 78 chr13 81885077 81885348 -37859550 + L2 LINE L2 2977 3266 -6 12557 134 25 18 chr13 81887725 81888355 -37856543 + Tigger1 DNA MER2_type 2 626 -1792 2226 107 0 3 chr13 81888355 81888653 -37856245 + AluSx SINE Alu 1 297 -15 12557 134 25 18 chr13 81888653 81890215 -37854683 + Tigger1 DNA MER2_type 626 2175 -243 228 86 0 0 chr13 81890215 81890250 -37854648 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 2027 130 0 4 chr13 81890252 81890529 -37854369 - AluSx SINE Alu -36 276 1 12557 134 25 18 chr13 81890529 81890739 -37854159 + Tigger1 DNA MER2_type 2175 2418 0 311 239 76 104 chr13 81890923 81891232 -37853666 - L1ME LINE L1 -546 5575 5256 3493 117 23 80 chr13 81891560 81892211 -37852687 + L1PB3 LINE L1 5523 6136 -18 366 80 0 0 chr13 81892439 81892489 -37852409 + (CA)n Simple_repeat Simple_repeat 2 51 0 624 228 93 29 chr13 81893185 81893497 -37851401 + L1ME4a LINE L1 5787 6118 -3 2087 120 7 3 chr13 81893905 81894204 -37850694 - AluSc SINE Alu -9 300 1 21 0 0 0 chr13 81894358 81894379 -37850519 + AT_rich Low_complexity Low_complexity 1 21 0 310 304 13 0 chr13 81894745 81894824 -37850074 - MIR SINE MIR -178 84 5 1408 236 22 50 chr13 81895071 81895515 -37849383 - L1ME3A LINE L1 0 6170 5739 303 293 155 9 chr13 81896482 81896598 -37848300 + MIR3 SINE MIR 36 168 -40 181 231 0 0 chr13 81897209 81897248 -37847650 + L2 LINE L2 3265 3303 -10 366 257 0 0 chr13 81898797 81898972 -37845926 + GA-rich Low_complexity Low_complexity 2 176 0 497 250 8 0 chr13 81900123 81900247 -37844651 + L1ME3A LINE L1 6046 6170 0 256 290 14 0 chr13 81900477 81900546 -37844352 + MIR SINE MIR 12 81 -181 1420 264 72 61 chr13 81900546 81901141 -37843757 - MLT1H1 LTR MaLR 0 555 1 558 277 32 0 chr13 81901141 81901296 -37843602 + MIR SINE MIR 77 236 -26 260 308 58 33 chr13 81902348 81902468 -37842430 - L2 LINE L2 -13 3259 3137 268 268 237 0 chr13 81902724 81902821 -37842077 + L2 LINE L2 3149 3268 -4 2277 82 9 35 chr13 81903470 81903789 -37841109 + AluY SINE Alu 1 311 0 1823 158 7 14 chr13 81904144 81904435 -37840463 + AluJb SINE Alu 1 289 -23 777 219 34 11 chr13 81904648 81904917 -37839981 + L1MA7 LINE L1 3358 3632 -3933 12577 195 30 20 chr13 81905018 81907223 -37837675 + L1MA7 LINE L1 3621 5857 -1853 189 0 0 0 chr13 81907223 81907244 -37837654 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 12577 195 30 20 chr13 81907244 81909118 -37835780 + L1MA7 LINE L1 5857 7710 0 2986 209 21 10 chr13 81909161 81909879 -37835019 + L1 LINE L1 6027 6752 -813 8141 210 32 1 chr13 81909884 81913894 -37831004 + L1PBa LINE L1 6 4436 -2426 210 37 0 0 chr13 81913894 81913921 -37830977 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8141 210 32 1 chr13 81913921 81914243 -37830655 + L1PBa LINE L1 4436 4747 -2115 2058 21 0 4 chr13 81914249 81914515 -37830383 + L1PA3 LINE L1 5904 6168 0 933 241 48 53 chr13 81914516 81914915 -37829983 + L1MA9 LINE L1 5878 6274 -38 25 49 0 33 chr13 81914916 81914954 -37829944 + AT_rich Low_complexity Low_complexity 1 38 -21 1073 83 0 0 chr13 81914954 81915098 -37829800 + L1MA2 LINE L1 6160 6303 -1 25 49 0 33 chr13 81915098 81915120 -37829778 + AT_rich Low_complexity Low_complexity 38 59 0 245 253 13 40 chr13 81915242 81915317 -37829581 - MER5B DNA MER1_type -21 168 86 22 70 0 0 chr13 81915688 81915731 -37829167 + AT_rich Low_complexity Low_complexity 1 43 0 2887 3 0 0 chr13 81918110 81918421 -37826477 - AluYa5 SINE Alu 0 311 1 21 36 0 0 chr13 81918473 81918501 -37826397 + AT_rich Low_complexity Low_complexity 1 28 0 217 315 161 0 chr13 81919458 81919607 -37825291 - MIR3 SINE MIR -3 205 33 200 239 22 0 chr13 81919880 81919926 -37824972 + A-rich Low_complexity Low_complexity 2 48 0 6427 31 5 0 chr13 81922331 81923110 -37821788 - L1PA4 LINE L1 -2103 4043 3261 11163 27 6 1 chr13 81923110 81925202 -37819696 + L1PA4 LINE L1 4060 6155 0 305 109 0 0 chr13 81925459 81925505 -37819393 + MADE1 DNA Mariner 35 80 0 375 274 126 22 chr13 81925603 81925738 -37819160 - MIR SINE MIR -108 154 6 256 299 33 81 chr13 81925922 81926133 -37818765 + L2 LINE L2 2652 2852 -462 2292 99 0 22 chr13 81927634 81927947 -37816951 - AluSx SINE Alu -4 308 3 25 51 0 0 chr13 81928743 81928782 -37816116 + AT_rich Low_complexity Low_complexity 1 39 0 2101 102 3 3 chr13 81928891 81929219 -37815679 + AluSq SINE Alu 1 328 0 590 196 51 22 chr13 81929527 81929665 -37815233 - MLT1L LTR MaLR -8 607 466 271 191 0 0 chr13 81929805 81929852 -37815046 - MLT1L LTR MaLR -540 75 29 1386 217 21 10 chr13 81930019 81930402 -37814496 - L1 LINE L1 -2728 3418 3032 246 345 0 84 chr13 81930510 81930652 -37814246 - MIR3 SINE MIR -69 139 10 312 188 0 0 chr13 81930744 81930808 -37814090 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 232 323 152 28 chr13 81931349 81931566 -37813332 + MIR SINE MIR 5 248 -14 258 313 45 9 chr13 81931755 81931867 -37813031 + MLT1I LTR MaLR 27 142 -267 2396 59 3 3 chr13 81932151 81932454 -37812444 - AluY SINE Alu -8 303 1 21 36 0 0 chr13 81933060 81933088 -37811810 + AT_rich Low_complexity Low_complexity 1 28 0 226 326 111 21 chr13 81933374 81933518 -37811380 + L1MEd LINE L1 497 653 -5719 198 0 0 0 chr13 81933570 81933592 -37811306 + (T)n Simple_repeat Simple_repeat 1 22 0 2230 90 3 3 chr13 81933597 81933885 -37811013 + AluSc SINE Alu 1 288 -21 1446 114 58 10 chr13 81933890 81934249 -37810649 - L1P4 LINE L1 -647 5521 5147 396 315 49 59 chr13 81935098 81935384 -37809514 + L1MEd LINE L1 1702 1984 -4579 345 255 19 83 chr13 81935669 81935826 -37809072 + L1MEd LINE L1 2260 2406 -3978 405 222 0 0 chr13 81935838 81935910 -37808988 + Tigger5 DNA MER2_type 8 79 -2244 309 175 0 18 chr13 81935916 81935973 -37808925 + Tigger5 DNA MER2_type 2268 2323 0 323 319 83 43 chr13 81936125 81936545 -37808353 + L1MEd LINE L1 2567 3003 -3379 2737 221 45 12 chr13 81936549 81937309 -37807589 - L1M LINE L1 -743 5403 4636 5310 160 23 3 chr13 81937313 81938220 -37806678 + L1MC1 LINE L1 5403 6327 -6 6136 72 4 1 chr13 81938220 81939017 -37805881 + L1PA8 LINE L1 5360 6158 -14 305 328 49 77 chr13 81939537 81939784 -37805114 - L2 LINE L2 -1 3271 3032 3117 75 5 0 chr13 81941334 81941736 -37803162 + MLT2A1 LTR ERVL 1 404 -40 387 56 0 0 chr13 81941808 81941862 -37803036 + (GA)n Simple_repeat Simple_repeat 2 55 0 308 0 0 0 chr13 81941862 81941896 -37803002 + MLT2A1 LTR ERVL 411 444 0 563 0 15 0 chr13 81942221 81942288 -37802610 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 496 291 50 27 chr13 81942802 81943022 -37801876 + MIR SINE MIR 25 249 -13 25 51 0 0 chr13 81943736 81943775 -37801123 + AT_rich Low_complexity Low_complexity 1 39 0 2156 146 20 40 chr13 81944282 81944680 -37800218 - MLT1B LTR MaLR 0 390 1 7231 52 8 0 chr13 81945106 81946134 -37798764 + L1PA8 LINE L1 5128 6169 -3 1990 286 53 20 chr13 81946153 81947546 -37797352 - L1MEc LINE L1 -3678 2402 1004 552 208 71 7 chr13 81947555 81947709 -37797189 - L1MA4 LINE L1 -21 6279 6116 273 119 0 0 chr13 81947709 81947751 -37797147 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 250 222 49 0 chr13 81947756 81947837 -37797061 - L1MC4 LINE L1 -1343 6699 6615 361 76 30 30 chr13 81947838 81947904 -37796994 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 2863 148 22 97 chr13 81947904 81948546 -37796352 - L1MA4 LINE L1 -176 6124 5531 1606 271 106 41 chr13 81948547 81949453 -37795445 - L1MEc LINE L1 -5086 984 20 744 210 26 151 chr13 81949697 81949968 -37794930 + AluSx SINE Alu 4 240 -72 3894 114 104 99 chr13 81949969 81951268 -37793630 - pTR5 LTR ERV1 0 2438 815 373 154 28 65 chr13 81951268 81951401 -37793497 + AluSc SINE Alu 233 294 -5 2361 80 0 0 chr13 81951402 81951704 -37793194 + AluY SINE Alu 1 302 -9 285 237 17 0 chr13 81952037 81952096 -37792802 - L2 LINE L2 0 3313 3254 21 57 0 0 chr13 81953451 81953486 -37791412 + AT_rich Low_complexity Low_complexity 1 35 0 196 260 39 67 chr13 81953698 81953802 -37791096 + L2 LINE L2 3136 3236 -77 259 299 15 0 chr13 81953841 81953908 -37790990 + L2 LINE L2 3184 3251 -21 228 317 6 116 chr13 81954383 81954547 -37790351 + MIR SINE MIR 59 204 -58 2217 98 0 41 chr13 81954645 81954963 -37789935 + AluSg SINE Alu 1 305 -5 208 325 0 12 chr13 81955267 81955347 -37789551 + CT-rich Low_complexity Low_complexity 2 80 0 274 243 243 0 chr13 81955742 81955849 -37789049 - L1MC5 LINE L1 -72 7889 7757 2295 116 0 0 chr13 81955886 81956189 -37788709 - AluSx SINE Alu -9 303 1 1039 182 32 0 chr13 81956764 81956951 -37787947 + AluJo SINE Alu 94 286 -26 200 57 0 29 chr13 81956952 81956987 -37787911 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 447 306 9 0 chr13 81957637 81957745 -37787153 + L2 LINE L2 3161 3269 -3 855 309 69 23 chr13 81958327 81958957 -37785941 + L1ME3A LINE L1 5337 5993 -169 511 242 143 28 chr13 81959494 81959676 -37785222 + MIR SINE MIR 21 223 -39 1954 140 7 7 chr13 81961172 81961464 -37783434 - AluSx SINE Alu -20 292 1 232 310 89 47 chr13 81961476 81961784 -37783114 + L2 LINE L2 2698 3018 -254 231 341 0 0 chr13 81962086 81962168 -37782730 + MIR SINE MIR 67 148 -114 282 148 0 0 chr13 81962949 81963003 -37781895 + (TTCA)n Simple_repeat Simple_repeat 1 54 0 1495 208 60 20 chr13 81963433 81963784 -37781114 - MLT1A1 LTR MaLR 0 365 1 518 237 155 16 chr13 81963793 81963987 -37780911 - L2 LINE L2 -14 3299 3079 533 325 12 0 chr13 81964027 81964190 -37780708 + MIR SINE MIR 20 184 -78 448 309 128 60 chr13 81964415 81964751 -37780147 - L2 LINE L2 -813 2501 2143 354 344 71 16 chr13 81964954 81965137 -37779761 - MIR SINE MIR -60 202 10 303 283 227 10 chr13 81965146 81965344 -37779554 - L3 LINE CR1 -5 1572 1332 235 304 173 22 chr13 81965436 81966239 -37778659 + L1M4 LINE L1 3687 4610 -1536 36 40 0 0 chr13 81966262 81966312 -37778586 + AT_rich Low_complexity Low_complexity 1 50 0 5785 54 3 4 chr13 81966949 81967685 -37777213 + L1PA7 LINE L1 5417 6151 -3 288 260 27 0 chr13 81967826 81967899 -37776999 + GA-rich Low_complexity Low_complexity 1 75 0 1767 148 0 59 chr13 81968125 81968430 -37776468 - AluJo SINE Alu -25 287 1 211 363 12 0 chr13 81968440 81968520 -37776378 + L2 LINE L2 3230 3310 -3 1821 210 8 0 chr13 81968593 81968955 -37775943 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr13 81970111 81970133 -37774765 + AT_rich Low_complexity Low_complexity 1 22 0 205 145 29 58 chr13 81972727 81972796 -37772102 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 1679 196 7 0 chr13 81973827 81974139 -37770759 - AluJb SINE Alu 0 314 1 5897 162 34 39 chr13 81974150 81975925 -37768973 - L1MC1 LINE L1 -1 6332 4572 774 299 82 49 chr13 81975926 81976070 -37768828 - MLT1H LTR MaLR -4 545 407 2844 10 0 0 chr13 81976070 81976378 -37768520 + AluY SINE Alu 1 308 -3 774 299 82 49 chr13 81976378 81976724 -37768174 - MLT1H LTR MaLR -142 407 39 252 286 151 8 chr13 81977030 81977156 -37767742 + L2 LINE L2 1920 2063 -1251 2061 245 48 97 chr13 81977158 81977196 -37767702 + L2 LINE L2 2282 2320 -993 1394 203 64 47 chr13 81977196 81977555 -37767343 - MLT1A1 LTR MaLR 0 365 1 2061 245 48 97 chr13 81977555 81978583 -37766315 + L2 LINE L2 2320 3298 -15 2179 122 10 0 chr13 81978612 81978907 -37765991 + AluSx SINE Alu 3 300 -12 297 152 91 71 chr13 81979065 81979164 -37765734 + LTR67 LTR ERVL 457 557 0 489 267 9 91 chr13 81980063 81980295 -37764603 + L1MCc LINE L1 62 274 -6149 * 667 264 27 49 chr13 81980291 81980620 -37764278 + L1MCc LINE L1 1984 2305 -4817 532 234 192 23 chr13 81980959 81981173 -37763725 + MIR SINE MIR 12 261 -1 285 333 49 37 chr13 81982530 81982692 -37762206 - MIR3 SINE MIR -35 173 10 458 245 68 61 chr13 81982751 81982898 -37762000 + MIR SINE MIR 26 173 -89 1158 134 22 0 chr13 81983310 81983489 -37761409 - L1PB3 LINE L1 -5 6149 5967 2949 104 7 2 chr13 81983491 81983975 -37760923 + MER1A DNA MER1_type 3 529 0 3441 122 4 2 chr13 81983977 81984484 -37760414 - L1PB3 LINE L1 -182 5972 5465 396 0 0 0 chr13 81984579 81984623 -37760275 + (CA)n Simple_repeat Simple_repeat 2 45 0 870 171 23 0 chr13 81984662 81984838 -37760060 - MER96B DNA MER1_type? -237 180 1 443 264 16 8 chr13 81984951 81985076 -37759822 + LTR67 LTR ERVL 418 543 -14 2133 52 63 0 chr13 81985086 81985356 -37759542 + AluY SINE Alu 17 303 -8 228 294 61 49 chr13 81985657 81985871 -37759027 + MIR SINE MIR 1 255 -7 237 306 83 0 chr13 81986067 81986139 -37758759 + MER91C DNA MER1_type 40 117 -23 253 0 54 0 chr13 81987162 81987199 -37757699 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1979 134 20 0 chr13 81988443 81988749 -37756149 + AluSq SINE Alu 1 312 -1 2036 137 64 20 chr13 81989301 81989709 -37755189 + L1MA8 LINE L1 5865 6290 -1 309 231 103 0 chr13 81989832 81989910 -37754988 + MER5C DNA MER1_type 35 120 -204 4925 117 17 9 chr13 81989915 81990423 -37754475 - L1MA4A LINE L1 -6 6297 5779 2145 129 13 0 chr13 81990423 81990726 -37754172 - AluSx SINE Alu -5 307 1 4925 117 17 9 chr13 81990726 81990987 -37753911 - L1MA4A LINE L1 -524 5779 5522 342 165 13 38 chr13 81991008 81991087 -37753811 + L1M2 LINE L1 5432 5508 -789 594 191 155 26 chr13 81991087 81991281 -37753617 + MER5C DNA MER1_type 106 324 0 388 285 185 6 chr13 81991282 81991442 -37753456 - MIR SINE MIR -56 206 28 742 228 54 0 chr13 81991827 81992011 -37752887 - L1MD3 LINE L1 -18 7977 7784 255 328 138 0 chr13 81992370 81992486 -37752412 - L2 LINE L2 -8 3264 3133 1158 263 84 42 chr13 81992968 81993465 -37751433 + MER115 DNA AcHobo 138 692 -1 491 262 116 27 chr13 81994260 81994531 -37750367 + L1MDa LINE L1 1625 2015 -886 2160 116 0 13 chr13 81994751 81995052 -37749846 + AluSc SINE Alu 2 298 -11 23 78 0 0 chr13 81995228 81995279 -37749619 + AT_rich Low_complexity Low_complexity 1 51 0 490 284 94 67 chr13 81995327 81995679 -37749219 + L1MDa LINE L1 2543 2884 -3656 957 105 111 0 chr13 81995679 81995841 -37749057 + L1PA14 LINE L1 5976 6155 -6 490 284 94 67 chr13 81995841 81996465 -37748433 + L1MDa LINE L1 2884 3490 -3050 1972 114 0 7 chr13 81996465 81996738 -37748160 + AluSq SINE Alu 4 274 -39 490 284 94 67 chr13 81996738 81997347 -37747551 + L1MDa LINE L1 3490 4172 -2368 374 351 75 75 chr13 81998954 81999211 -37745687 - L2 LINE L2 -443 2871 2612 2051 134 0 3 chr13 81999211 81999501 -37745397 + AluSx SINE Alu 9 297 -15 374 351 75 75 chr13 81999501 81999668 -37745230 - L2 LINE L2 -701 2613 2447 417 178 20 20 chr13 81999695 81999796 -37745102 - Looper DNA T2_type 0 1558 1458 618 147 18 9 chr13 81999800 81999909 -37744989 + L1MC1 LINE L1 6224 6333 0 5074 138 53 2 chr13 81999910 82000004 -37744894 + L1PB4 LINE L1 5195 5283 -1020 222 91 0 0 chr13 82000004 82000037 -37744861 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5074 138 53 2 chr13 82000037 82000504 -37744394 + L1PB4 LINE L1 5283 5724 -579 441 0 0 0 chr13 82000504 82000553 -37744345 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 5074 138 53 2 chr13 82000553 82000924 -37743974 + L1PB4 LINE L1 5724 6303 0 1076 221 4 4 chr13 82000939 82001193 -37743705 - Looper DNA T2_type -83 1475 1222 779 300 83 28 chr13 82001242 82002212 -37742686 - L1MC4a LINE L1 -747 5399 4835 452 292 72 15 chr13 82002263 82002633 -37742265 - LTR33 LTR ERVL -62 459 33 21 36 0 0 chr13 82002704 82002732 -37742166 + AT_rich Low_complexity Low_complexity 1 28 0 6290 139 4 6 chr13 82003124 82003485 -37741413 - L1PB1 LINE L1 0 6151 5791 231 36 0 0 chr13 82003485 82003513 -37741385 + (TA)n Simple_repeat Simple_repeat 1 28 0 2290 98 13 3 chr13 82003520 82003827 -37741071 - AluSq SINE Alu -3 310 1 6290 139 4 6 chr13 82003827 82004827 -37740071 - L1PB1 LINE L1 -366 5785 4785 11897 185 14 27 chr13 82004864 82007640 -37737258 + L1M2 LINE L1 2754 5489 -1359 577 358 53 9 chr13 82007652 82007990 -37736908 - ERVL LTR ERVL -582 5182 4830 716 276 141 36 chr13 82008072 82008405 -37736493 - LTR33 LTR ERVL -62 459 92 300 281 68 47 chr13 82008622 82008960 -37735938 - L1MC4a LINE L1 -1313 4833 4489 189 74 0 0 chr13 82009184 82009211 -37735687 + (CA)n Simple_repeat Simple_repeat 2 28 0 303 308 77 0 chr13 82009480 82009584 -37735314 + L2 LINE L2 3196 3307 -6 273 268 106 8 chr13 82009608 82009731 -37735167 - L1MC4a LINE L1 -2275 3871 3737 2969 136 35 39 chr13 82009737 82009917 -37734981 - L1MA8 LINE L1 -2 6289 6110 1886 161 0 3 chr13 82009917 82010221 -37734677 + AluJo SINE Alu 1 303 -9 2969 136 35 39 chr13 82010221 82010638 -37734260 - L1MA8 LINE L1 -181 6110 5694 1693 199 74 56 chr13 82010651 82011044 -37733854 - LTR10A LTR ERV1 -61 548 141 2613 7 0 0 chr13 82011044 82011336 -37733562 + L1PA5 LINE L1 5856 6147 -7 1693 199 74 56 chr13 82011336 82011480 -37733418 - LTR10A LTR ERV1 -468 141 1 947 176 1 7 chr13 82011481 82011663 -37733235 - L1MA8 LINE L1 -510 5664 5516 376 312 60 41 chr13 82011807 82012124 -37732774 - L1MC4a LINE L1 -2571 3575 3253 733 171 0 0 chr13 82012128 82012245 -37732653 - FLAM_A SINE Alu -20 122 6 289 258 142 54 chr13 82012271 82012791 -37732107 - L1MC4a LINE L1 -2901 3245 2680 318 267 109 10 chr13 82013166 82013267 -37731631 + L2 LINE L2 3203 3313 0 452 231 210 11 chr13 82013931 82014117 -37730781 + Charlie1 DNA MER1_type 1983 2205 -556 1517 299 30 2 chr13 82014320 82014758 -37730140 - LTR16A LTR ERVL 0 450 1 4646 212 91 29 chr13 82014808 82014915 -37729983 - Charlie1a DNA MER1_type -1306 1455 1356 2107 134 0 0 chr13 82014915 82015206 -37729692 + AluSx SINE Alu 1 291 -21 4646 212 91 29 chr13 82015206 82015498 -37729400 - Charlie1a DNA MER1_type -1405 1356 1084 1906 158 3 3 chr13 82015498 82015796 -37729102 + AluJb SINE Alu 1 298 -14 4646 212 91 29 chr13 82015796 82015856 -37729042 - Charlie1a DNA MER1_type -1677 1084 1029 2226 89 7 7 chr13 82015856 82016195 -37728703 - AluSc SINE Alu 0 309 2 4646 212 91 29 chr13 82016195 82017103 -37727795 - Charlie1a DNA MER1_type -1732 1029 1 321 309 48 16 chr13 82019620 82019786 -37725112 + MIR SINE MIR 16 186 -76 1086 197 88 0 chr13 82020158 82020315 -37724583 - AluJo SINE Alu -29 283 98 220 0 86 0 chr13 82020315 82020350 -37724548 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1086 197 88 0 chr13 82020350 82020420 -37724478 - AluJo SINE Alu -214 98 36 1770 176 3 13 chr13 82021079 82021391 -37723507 + AluJb SINE Alu 1 309 -3 209 302 0 16 chr13 82021677 82021740 -37723158 - L2 LINE L2 -1 3312 3251 918 171 3 3 chr13 82024549 82024863 -37720035 + L1MB2 LINE L1 5798 6169 -2 211 293 49 0 chr13 82027078 82027160 -37717738 - L2 LINE L2 -33 3280 3195 2536 119 6 0 chr13 82027791 82028153 -37716745 + THE1B LTR MaLR 1 364 0 418 272 37 16 chr13 82029097 82029284 -37715614 - MIR SINE MIR -69 139 3 208 73 36 73 chr13 82031127 82031182 -37713716 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chr13 82031324 82031344 -37713554 + (TGG)n Simple_repeat Simple_repeat 1 20 0 6727 134 53 14 chr13 82033910 82034652 -37710246 + Tigger3b DNA MER2_type 1 809 -2219 2402 68 0 3 chr13 82034652 82034944 -37709954 + AluY SINE Alu 9 299 -12 6727 134 53 14 chr13 82034944 82035384 -37709514 + Tigger3b DNA MER2_type 809 1230 -1 288 294 165 0 chr13 82035489 82035598 -37709300 - L2 LINE L2 -8 3305 3179 22 0 0 0 chr13 82035695 82035717 -37709181 + AT_rich Low_complexity Low_complexity 1 22 0 1946 136 0 34 chr13 82035749 82036072 -37708826 + AluSx SINE Alu 1 312 0 1975 181 33 29 chr13 82036134 82036553 -37708345 - MSTB LTR MaLR -5 421 1 455 194 84 47 chr13 82036565 82036756 -37708142 + L1MDa LINE L1 1530 1727 -4813 207 100 0 0 chr13 82036780 82036810 -37708088 + (A)n Simple_repeat Simple_repeat 1 30 0 475 270 105 34 chr13 82037129 82037425 -37707473 + L1ME4a LINE L1 5731 6047 -74 211 374 102 0 chr13 82037496 82037643 -37707255 + L3 LINE CR1 1402 1563 -14 1173 373 32 24 chr13 82038212 82039189 -37705709 + ERVL LTR ERVL 4317 5301 -463 431 226 6 101 chr13 82039366 82039525 -37705373 + LTR16A1 LTR ERVL 8 151 -306 * 2673 139 36 11 chr13 82039519 82039966 -37704932 + LTR32 LTR ERVL 9 466 -5 437 272 134 43 chr13 82039998 82040274 -37704624 + LTR16A1 LTR ERVL 157 457 0 222 256 0 98 chr13 82040276 82040358 -37704540 - MER5A DNA MER1_type -8 181 108 922 149 0 22 chr13 82041434 82041568 -37703330 + FLAM_C SINE Alu 2 132 -1 2152 121 0 0 chr13 82041754 82042051 -37702847 + AluSx SINE Alu 2 298 -14 4673 144 63 17 chr13 82042548 82043372 -37701526 - L1MA8 LINE L1 0 6291 5430 198 336 51 22 chr13 82043828 82043965 -37700933 - MIR SINE MIR -102 160 20 30 27 0 0 chr13 82044321 82044358 -37700540 + AT_rich Low_complexity Low_complexity 1 37 0 1019 118 33 0 chr13 82044514 82044666 -37700232 - AluSx SINE Alu 0 310 154 624 180 10 0 chr13 82044666 82044766 -37700132 - AluSx SINE Alu -211 101 1 274 263 0 0 chr13 82044841 82044917 -37699981 - L1M1 LINE L1 -531 5771 5696 219 359 10 39 chr13 82044946 82045049 -37699849 + MER5A DNA MER1_type 64 163 -26 635 275 136 29 chr13 82045093 82045439 -37699459 - L1ME LINE L1 -525 5639 5257 1639 260 125 67 chr13 82045439 82045776 -37699122 - HAL1 LINE L1 -35 2472 2156 1749 168 13 29 chr13 82045776 82046092 -37698806 - AluJo SINE Alu -1 311 1 1639 260 125 67 chr13 82046092 82046913 -37697985 - HAL1 LINE L1 -351 2156 1238 180 0 0 0 chr13 82046913 82046933 -37697965 + (TC)n Simple_repeat Simple_repeat 2 21 0 1639 260 125 67 chr13 82046933 82046991 -37697907 - HAL1 LINE L1 -1269 1238 1185 1633 201 11 60 chr13 82046991 82047355 -37697543 - MLT1A1 LTR MaLR -17 348 3 1170 282 138 47 chr13 82047394 82048284 -37696614 - HAL1 LINE L1 -1435 1072 102 245 326 42 0 chr13 82049126 82049221 -37695677 - MIR SINE MIR -70 192 94 328 248 68 43 chr13 82050038 82050155 -37694743 + MIR SINE MIR 87 206 -56 291 140 0 0 chr13 82050172 82050222 -37694676 + (A)n Simple_repeat Simple_repeat 1 50 0 314 164 179 0 chr13 82050334 82050401 -37694497 - MADE1 DNA Mariner -1 79 1 1248 213 62 151 chr13 82050719 82050791 -37694107 - MSTB2 LTR MaLR 0 457 380 2173 97 10 10 chr13 82050791 82051090 -37693808 + AluSc SINE Alu 1 299 -10 1248 213 62 151 chr13 82051090 82051487 -37693411 - MSTB2 LTR MaLR -77 380 1 235 309 56 32 chr13 82051695 82051821 -37693077 - L2 LINE L2 0 3313 3185 236 245 93 65 chr13 82052128 82052267 -37692631 - MIR SINE MIR -1 261 119 2319 171 25 52 chr13 82052344 82052782 -37692116 + MSTB LTR MaLR 1 426 0 324 326 22 56 chr13 82052804 82052982 -37691916 - L2 LINE L2 -17 3255 3084 2232 169 31 32 chr13 82053361 82053912 -37690986 - MLT2A2 LTR ERVL 0 554 1 1140 209 156 38 chr13 82054088 82054427 -37690471 + MLT1C LTR MaLR 87 465 -2 226 232 101 0 chr13 82054879 82054948 -37689950 - L2 LINE L2 -42 3230 3155 294 250 25 0 chr13 82055136 82055216 -37689682 + (AGGTG)n Simple_repeat Simple_repeat 3 84 0 181 333 57 35 chr13 82055272 82055413 -37689485 + MIR SINE MIR 91 234 -28 214 342 79 18 chr13 82055791 82055905 -37688993 + L2 LINE L2 3151 3271 -1 516 153 6 70 chr13 82055905 82056062 -37688836 + GA-rich Low_complexity Low_complexity 1 147 0 217 118 0 0 chr13 82056068 82056102 -37688796 + (G)n Simple_repeat Simple_repeat 1 34 0 359 224 265 27 chr13 82056309 82056532 -37688366 - HAL1 LINE L1 -1801 706 431 1473 227 73 39 chr13 82056593 82057086 -37687812 + LTR53 LTR ERVL 3 512 -7 222 220 0 20 chr13 82057095 82057145 -37687753 + (TG)n Simple_repeat Simple_repeat 1 49 0 338 169 127 0 chr13 82057147 82057218 -37687680 - HAL1 LINE L1 -2126 381 302 752 216 70 12 chr13 82057233 82057404 -37687494 + MIR SINE MIR 33 213 -49 618 261 15 20 chr13 82057420 82057615 -37687283 + HAL1 LINE L1 12 205 -2302 331 254 0 0 chr13 82058069 82058132 -37686766 - L2 LINE L2 -39 3274 3212 1994 120 25 0 chr13 82058191 82058466 -37686432 - AluSx SINE Alu -30 282 1 297 222 167 11 chr13 82059417 82059507 -37685391 + L2 LINE L2 3169 3272 0 425 237 210 11 chr13 82060175 82060361 -37684537 + Charlie1 DNA MER1_type 1983 2205 -556 1546 298 27 2 chr13 82060564 82061003 -37683895 - LTR16A LTR ERVL 0 450 1 424 237 43 0 chr13 82061053 82061146 -37683752 - Charlie1 DNA MER1_type 0 2761 2665 2183 103 0 0 chr13 82061160 82061620 -37683278 + AluSx SINE Alu 1 460 0 1061 101 11 0 chr13 82061442 82061683 -37683215 + (GAAA)n Simple_repeat Simple_repeat 1 243 0 494 266 35 0 chr13 82062623 82062736 -37682162 - L2 LINE L2 -8 3264 3148 367 190 0 0 chr13 82063214 82063272 -37681626 - AluJ/FRAM SINE Alu -13 289 232 2144 102 10 3 chr13 82063312 82063606 -37681292 - AluSx SINE Alu -16 296 1 834 167 0 14 chr13 82063608 82063746 -37681152 - AluJo SINE Alu -171 141 6 307 274 99 44 chr13 82063750 82063893 -37681005 + MIR SINE MIR 20 176 -32 240 361 36 29 chr13 82063968 82064242 -37680656 - L2 LINE L2 -112 3201 2926 508 285 186 23 chr13 82065593 82065814 -37679084 - MIR SINE MIR -3 259 3 291 316 112 51 chr13 82066835 82067227 -37677671 - L2 LINE L2 -638 2676 2261 2367 70 7 0 chr13 82067262 82067562 -37677336 + AluY SINE Alu 1 302 -9 1306 223 103 0 chr13 82067598 82067899 -37676999 - MER7A DNA MER2_type -3 343 14 285 284 68 0 chr13 82068510 82068598 -37676300 - MER96 DNA MER1_type? -81 94 1 186 282 14 42 chr13 82068598 82068669 -37676229 - MIR3 SINE MIR -134 74 6 279 305 158 45 chr13 82068685 82068931 -37675967 + L2 LINE L2 2999 3272 0 1900 174 19 0 chr13 82069413 82069730 -37675168 - L1PA16 LINE L1 -21 6145 5823 2288 105 0 37 chr13 82069731 82070054 -37674844 + AluSx SINE Alu 1 311 -1 1015 233 36 45 chr13 82070571 82070901 -37673997 - MER63 DNA MER1_type 0 1062 736 219 69 0 0 chr13 82071149 82071178 -37673720 + (T)n Simple_repeat Simple_repeat 1 29 0 428 234 91 7 chr13 82071525 82071679 -37673219 + MLT1J LTR MaLR 189 355 -156 723 156 52 22 chr13 82072351 82072486 -37672412 - FLAM_C SINE Alu -3 140 2 322 291 57 25 chr13 82072814 82072972 -37671926 - L1MC4a LINE L1 -1877 5931 5769 1245 141 5 0 chr13 82072998 82073183 -37671715 - AluJb SINE Alu -126 186 1 5294 148 62 21 chr13 82074956 82075698 -37669200 + Tigger3b DNA MER2_type 1 798 -2230 2352 79 0 3 chr13 82075698 82075990 -37668908 + AluY SINE Alu 9 299 -12 5294 148 62 21 chr13 82075990 82076263 -37668635 + Tigger3b DNA MER2_type 798 1058 -173 214 342 79 18 chr13 82076433 82076547 -37668351 + L2 LINE L2 3151 3271 -1 689 155 8 0 chr13 82076547 82076676 -37668222 + GA-rich Low_complexity Low_complexity 1 130 0 296 213 62 106 chr13 82078826 82078986 -37665912 + L2 LINE L2 2653 2805 -509 233 239 28 14 chr13 82080167 82080238 -37664660 - MER94 DNA DNA -62 72 1 2956 87 0 6 chr13 82080297 82080663 -37664235 - THE1B LTR MaLR 0 364 1 582 86 0 0 chr13 82081319 82081400 -37663498 + (TG)n Simple_repeat Simple_repeat 2 82 0 1727 177 0 25 chr13 82082374 82082691 -37662207 + AluJb SINE Alu 1 309 -3 238 330 78 45 chr13 82083757 82083936 -37660962 + L2 LINE L2 2898 3082 -190 365 289 27 19 chr13 82084845 82085012 -37659886 + MLT1H1 LTR MaLR 1 172 -375 341 222 97 0 chr13 82085209 82085281 -37659617 + Tigger4(Zombi) DNA MER2_type 1 79 -2652 * 5245 127 27 18 chr13 82085275 82086128 -37658770 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 1425 195 134 13 chr13 82086133 82086440 -37658458 + MER2 DNA MER2_type 1 344 0 2232 137 0 3 chr13 82086478 82086792 -37658106 + AluSq SINE Alu 1 313 0 1833 242 14 7 chr13 82086950 82087371 -37657527 + L1MEc LINE L1 35 458 -5938 1948 42 0 0 chr13 82087438 82087675 -37657223 - L1PA4 LINE L1 -1488 4658 4422 7929 33 6 0 chr13 82087675 82089177 -37655721 + L1PA4 LINE L1 4661 6167 0 310 301 30 6 chr13 82089194 82089360 -37655538 + L1M4 LINE L1 5030 5199 -947 1507 191 8 0 chr13 82089363 82089625 -37655273 + AluJb SINE Alu 1 264 -48 216 0 0 0 chr13 82089744 82089768 -37655130 + (TG)n Simple_repeat Simple_repeat 2 25 0 271 319 55 0 chr13 82089949 82090040 -37654858 + L2 LINE L2 3137 3232 -40 366 23 0 0 chr13 82090310 82090353 -37654545 + (CA)n Simple_repeat Simple_repeat 2 44 0 230 203 0 17 chr13 82090411 82090470 -37654428 + GA-rich Low_complexity Low_complexity 3 60 0 661 171 55 91 chr13 82090546 82090745 -37654153 + MER110A LTR ERV1 49 240 -228 194 276 17 0 chr13 82091035 82091093 -37653805 - MIR SINE MIR -4 258 200 21 0 0 0 chr13 82092220 82092241 -37652657 + AT_rich Low_complexity Low_complexity 1 21 0 1062 16 0 0 chr13 82092358 82092479 -37652419 + AluY SINE Alu 186 306 -5 232 317 92 43 chr13 82093569 82093733 -37651165 + L2 LINE L2 2885 3056 -257 205 366 40 40 chr13 82093950 82094051 -37650847 + L2 LINE L2 3169 3269 -3 2093 109 4 0 chr13 82095700 82095976 -37648922 + AluSg SINE Alu 8 284 -26 23 33 0 0 chr13 82095976 82096006 -37648892 + AT_rich Low_complexity Low_complexity 1 30 0 1729 166 30 7 chr13 82096056 82096351 -37648547 - AluJb SINE Alu -10 302 1 1289 226 121 26 chr13 82096809 82097336 -37647562 + MER20B DNA MER1_type 6 647 -136 23 54 0 0 chr13 82099050 82099087 -37645811 + AT_rich Low_complexity Low_complexity 1 37 0 2132 170 23 51 chr13 82099274 82099787 -37645111 - L1ME1 LINE L1 -1188 4958 4460 * 2136 195 45 65 chr13 82099786 82099893 -37645005 + L1ME1 LINE L1 4977 5085 -1081 2228 117 0 0 chr13 82099893 82100192 -37644706 - AluSg SINE Alu -11 299 1 2136 195 45 65 chr13 82100192 82100561 -37644337 + L1ME1 LINE L1 5085 5460 -706 2150 131 0 0 chr13 82100561 82100858 -37644040 - AluSc SINE Alu -12 297 1 2136 195 45 65 chr13 82100858 82101496 -37643402 + L1ME1 LINE L1 5460 6014 -152 699 200 19 7 chr13 82101498 82101653 -37643245 + L1MA10 LINE L1 6176 6332 -2 2334 79 3 3 chr13 82101718 82102010 -37642888 - AluSc SINE Alu -17 292 1 2062 140 18 15 chr13 82103189 82103525 -37641373 - MER1B DNA MER1_type 0 337 1 221 296 41 41 chr13 82103567 82103665 -37641233 + MIR SINE MIR 154 251 -11 233 378 15 22 chr13 82103667 82103802 -37641096 - MIR3 SINE MIR -73 135 2 722 248 70 7 chr13 82104316 82104586 -37640312 + L2 LINE L2 2415 2701 -613 2247 108 0 0 chr13 82104640 82104936 -37639962 - AluSg SINE Alu -9 301 6 651 240 76 96 chr13 82105036 82105542 -37639356 + L2 LINE L2 2689 3182 -131 352 282 101 62 chr13 82105568 82105777 -37639121 - MIR SINE MIR -26 236 20 861 164 0 14 chr13 82105782 82105922 -37638976 + AluJo SINE Alu 6 143 -169 2378 81 3 0 chr13 82105922 82106217 -37638681 + AluSx SINE Alu 1 296 -16 344 190 0 0 chr13 82106257 82106315 -37638583 + AluJ/FRAM SINE Alu 232 289 -13 500 266 35 0 chr13 82106793 82106906 -37637992 + L2 LINE L2 3148 3264 -8 2232 135 40 44 chr13 82107546 82107976 -37636922 + MSTA LTR MaLR 1 428 0 447 337 6 6 chr13 82108054 82108229 -37636669 - MIR SINE MIR 0 262 88 598 348 71 11 chr13 82109448 82109827 -37635071 - L1M4 LINE L1 -3366 2780 2379 352 277 134 8 chr13 82109994 82110232 -37634666 - L1M4 LINE L1 -3766 2380 2113 242 253 27 27 chr13 82110807 82110882 -37634016 + MIR SINE MIR 132 206 -56 356 228 54 0 chr13 82111157 82111249 -37633649 + MIR SINE MIR 61 157 -105 25 0 0 0 chr13 82112654 82112679 -37632219 + AT_rich Low_complexity Low_complexity 1 25 0 240 254 0 0 chr13 82113127 82113182 -37631716 + (CA)n Simple_repeat Simple_repeat 2 56 0 2217 129 0 0 chr13 82113239 82113542 -37631356 - AluSx SINE Alu 0 312 10 762 278 24 0 chr13 82113901 82114106 -37630792 - L2 LINE L2 0 3313 3104 * 3502 297 43 39 chr13 82114092 82114465 -37630433 - L2 LINE L2 -554 2760 2390 2221 116 38 0 chr13 82114465 82114810 -37630088 + L1PB1 LINE L1 5793 6150 -1 3502 297 43 39 chr13 82114810 82115525 -37629373 - L2 LINE L2 -924 2390 1661 2034 125 4 0 chr13 82115525 82115832 -37629066 + AluSx SINE Alu 1 308 0 3502 297 43 39 chr13 82115832 82116201 -37628697 - L2 LINE L2 -1653 1661 1295 196 413 0 32 chr13 82116531 82116657 -37628241 + MIR SINE MIR 30 151 -57 396 297 36 0 chr13 82116747 82116885 -37628013 + HAL1 LINE L1 1 143 -2364 307 326 20 10 chr13 82116997 82117095 -37627803 + HAL1 LINE L1 259 357 -2150 356 277 69 25 chr13 82119737 82119947 -37624951 - MIR SINE MIR -46 216 2 247 250 10 10 chr13 82120046 82120142 -37624756 + GA-rich Low_complexity Low_complexity 2 97 0 222 299 142 39 chr13 82122825 82122904 -37621994 - L2 LINE L2 -1 3271 3173 555 79 0 0 chr13 82122904 82122980 -37621918 + MADE1 DNA Mariner 4 79 -1 222 299 142 39 chr13 82122980 82123027 -37621871 - L2 LINE L2 -99 3173 3132 327 234 40 109 chr13 82123687 82123862 -37621036 + MLT1I LTR MaLR 232 394 -15 322 292 124 0 chr13 82123903 82124088 -37620810 + MER113 DNA MER1_type? 2 209 -312 278 305 49 0 chr13 82124223 82124305 -37620593 + MIR SINE MIR 53 138 -70 22 35 0 0 chr13 82124352 82124381 -37620517 + AT_rich Low_complexity Low_complexity 1 29 0 324 278 93 19 chr13 82124514 82124622 -37620276 + L2 LINE L2 3148 3263 -9 448 250 73 37 chr13 82125045 82125209 -37619689 + MIR SINE MIR 93 262 0 2451 97 0 0 chr13 82125286 82125595 -37619303 - AluSc SINE Alu 0 309 1 2767 78 95 5 chr13 82125878 82126288 -37618610 + LTR7 LTR ERV1 2 448 -2 19767 82 8 26 chr13 82126290 82129331 -37615567 + HERVH LTR ERV1 1 2987 -4726 863 135 20 0 chr13 82129325 82129473 -37615425 + HERVH LTR ERV1 3140 3290 -4423 * 3255 99 4 6 chr13 82129463 82129966 -37614932 + HERVH LTR ERV1 3492 3993 -3720 3804 132 40 16 chr13 82129968 82130614 -37614284 + HERVH LTR ERV1 4488 5149 -2564 1272 139 23 0 chr13 82130615 82130830 -37614068 + HERVH LTR ERV1 5600 5819 -1894 2331 92 42 13 chr13 82130830 82131209 -37613689 + HERVH LTR ERV1 7324 7713 0 2922 61 95 0 chr13 82131209 82131618 -37613280 + LTR7 LTR ERV1 1 448 -2 2032 116 140 8 chr13 82131620 82131992 -37612906 + MSTA LTR MaLR 8 428 0 196 319 28 0 chr13 82135323 82135395 -37609503 - MIR SINE MIR 0 262 189 1471 231 0 19 chr13 82135412 82135728 -37609170 + AluJo SINE Alu 1 310 -2 442 76 38 25 chr13 82135728 82135807 -37609091 + GA-rich Low_complexity Low_complexity 1 80 0 2224 122 0 0 chr13 82136167 82136479 -37608419 - AluSx SINE Alu 0 312 1 731 147 126 0 chr13 82136501 82136644 -37608254 - FAM SINE Alu -13 162 2 10067 111 17 3 chr13 82136656 82138217 -37606681 + Tigger1 DNA MER2_type 55 1637 -781 1240 132 59 0 chr13 82138204 82138423 -37606475 + Tigger1 DNA MER2_type 2187 2418 0 * 254 240 0 27 chr13 82138698 82138773 -37606125 + (TA)n Simple_repeat Simple_repeat 2 74 0 180 152 0 0 chr13 82140588 82140621 -37604277 + MIR3 SINE MIR 171 203 -5 1385 226 55 87 chr13 82141408 82142031 -37602867 - L1ME3A LINE L1 -5 6165 5563 721 147 7 14 chr13 82142826 82142969 -37601929 + CT-rich Low_complexity Low_complexity 3 144 0 1059 159 6 0 chr13 82143155 82143318 -37601580 + AluJb SINE Alu 131 294 -18 24 67 0 0 chr13 82143435 82143480 -37601418 + AT_rich Low_complexity Low_complexity 1 45 0 24 77 0 0 chr13 82143616 82143668 -37601230 + AT_rich Low_complexity Low_complexity 1 52 0 268 211 0 0 chr13 82143904 82143956 -37600942 + L1ME2 LINE L1 5936 5987 -177 626 326 22 43 chr13 82144720 82144950 -37599948 + L2 LINE L2 2985 3209 -63 449 301 77 11 chr13 82145279 82145462 -37599436 - MER117 DNA MER1_type -2 195 1 385 294 48 8 chr13 82145462 82145588 -37599310 - MIR3 SINE MIR -48 160 30 192 125 0 0 chr13 82145661 82145693 -37599205 + (TA)n Simple_repeat Simple_repeat 1 32 0 495 267 86 37 chr13 82146910 82147097 -37597801 + LTR50 LTR ERVL 3 198 -597 1946 183 20 0 chr13 82147305 82147650 -37597248 - Tigger6 DNA MER2_type -1238 359 8 426 299 75 6 chr13 82148964 82149138 -37595760 - MIR SINE MIR -3 259 74 181 224 41 0 chr13 82149493 82149542 -37595356 - L2 LINE L2 0 3313 3263 627 298 156 51 chr13 82149859 82150662 -37594236 + L2 LINE L2 1618 2504 -810 205 346 37 0 chr13 82151718 82151854 -37593044 + L2 LINE L2 1713 1853 -1461 38797 67 27 3 chr13 82151863 82157860 -37587038 + L1PA5 LINE L1 1 6145 -9 180 0 0 0 chr13 82157860 82157880 -37587018 + (CAT)n Simple_repeat Simple_repeat 2 21 0 341 268 67 46 chr13 82157918 82158112 -37586786 + L2 LINE L2 1889 2086 -1228 288 341 121 49 chr13 82158238 82158502 -37586396 + L2 LINE L2 2866 3148 -124 1399 187 31 0 chr13 82158904 82159193 -37585705 - L1MD1 LINE L1 0 6242 5945 882 201 0 0 chr13 82159226 82159385 -37585513 - FRAM SINE Alu -7 159 1 2175 129 194 78 chr13 82159414 82159964 -37584934 + LTR18B LTR ERVL 1 614 0 679 175 0 0 chr13 82159984 82160098 -37584800 - FLAM_C SINE Alu -29 114 1 1997 232 118 32 chr13 82160098 82160817 -37584081 - L1M4 LINE L1 -1830 4316 3536 420 264 0 0 chr13 82160820 82160911 -37583987 - MER5B DNA MER1_type -68 110 20 1458 203 27 3 chr13 82161506 82161807 -37583091 + AluJb SINE Alu 3 310 -2 31 26 0 0 chr13 82163638 82163676 -37581222 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr13 82166099 82166124 -37578774 + AT_rich Low_complexity Low_complexity 1 25 0 360 0 0 0 chr13 82167989 82168029 -37576869 + (TG)n Simple_repeat Simple_repeat 2 41 0 617 230 52 0 chr13 82169175 82169310 -37575588 - MIR3 SINE MIR -23 185 44 180 77 0 0 chr13 82169687 82169713 -37575185 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 504 277 58 15 chr13 82169713 82169850 -37575048 - L2 LINE L2 -13 3259 3117 445 307 97 6 chr13 82170058 82170234 -37574664 + MIR SINE MIR 20 211 -51 32 43 0 0 chr13 82170280 82170326 -37574572 + AT_rich Low_complexity Low_complexity 1 46 0 240 111 0 0 chr13 82171687 82171723 -37573175 + (T)n Simple_repeat Simple_repeat 1 36 0 276 172 0 0 chr13 82171746 82171804 -37573094 + T-rich Low_complexity Low_complexity 1 58 0 210 71 0 0 chr13 82172539 82172567 -37572331 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr13 82172908 82172929 -37571969 + AT_rich Low_complexity Low_complexity 1 21 0 253 253 149 46 chr13 82173676 82173763 -37571135 + L2 LINE L2 3193 3288 -25 24 32 0 0 chr13 82174717 82174748 -37570150 + AT_rich Low_complexity Low_complexity 1 31 0 6072 138 53 43 chr13 82176746 82177963 -37566935 + Tigger3b DNA MER2_type 2 1231 0 1923 171 0 0 chr13 82178812 82179110 -37565788 + AluJb SINE Alu 3 300 -12 415 331 125 10 chr13 82179171 82179467 -37565431 + L1MC5 LINE L1 4023 4352 -1794 800 195 13 0 chr13 82179576 82179730 -37565168 + L1PB4 LINE L1 5997 6152 -4 216 0 0 0 chr13 82180480 82180504 -37564394 + (A)n Simple_repeat Simple_repeat 1 24 0 428 256 116 0 chr13 82180771 82180892 -37564006 + L1MC5 LINE L1 5488 5622 -2186 1094 238 48 38 chr13 82181106 82181502 -37563396 + L1MC5 LINE L1 6639 7062 -980 343 203 142 7 chr13 82181508 82181656 -37563242 + L1MC5 LINE L1 7527 7694 -267 520 236 31 37 chr13 82181756 82181917 -37562981 + L1MC5 LINE L1 7726 7885 -76 342 143 0 16 chr13 82182157 82182220 -37562678 + MER103 DNA DNA 12 73 -93 21 0 0 0 chr13 82182512 82182533 -37562365 + AT_rich Low_complexity Low_complexity 1 21 0 202 200 25 0 chr13 82182668 82182708 -37562190 + L2 LINE L2 3216 3256 -16 195 42 0 0 chr13 82182722 82182746 -37562152 + (CA)n Simple_repeat Simple_repeat 2 25 0 1709 158 25 0 chr13 82182816 82183100 -37561798 - AluJb SINE Alu -21 291 1 2190 80 0 51 chr13 82183135 82183447 -37561451 + AluY SINE Alu 1 296 -15 25 105 0 0 chr13 82186040 82186135 -37558763 + AT_rich Low_complexity Low_complexity 1 95 0 250 310 100 20 chr13 82186617 82186717 -37558181 - MIR SINE MIR -64 144 37 634 231 113 25 chr13 82186998 82187236 -37557662 + MIR SINE MIR 4 262 0 23 33 0 0 chr13 82188087 82188117 -37556781 + AT_rich Low_complexity Low_complexity 1 30 0 189 239 0 0 chr13 82189627 82189673 -37555225 - L2 LINE L2 0 3313 3268 2002 110 25 3 chr13 82189732 82190014 -37554884 + AluSx SINE Alu 1 288 -24 246 280 168 0 chr13 82190120 82190227 -37554671 + L2 LINE L2 3188 3312 -1 793 349 146 8 chr13 82190346 82190833 -37554065 - L2 LINE L2 -469 2845 2292 2202 121 38 43 chr13 82190933 82191356 -37553542 + L1MA7 LINE L1 5869 6289 -2 275 242 126 0 chr13 82191468 82191563 -37553335 - MER103 DNA DNA -3 163 57 355 322 62 20 chr13 82193116 82193262 -37551636 + L2 LINE L2 2543 2694 -620 838 236 157 51 chr13 82193329 82194004 -37550894 + L1MC4 LINE L1 5877 6526 -1282 1220 158 102 0 chr13 82195408 82195673 -37549225 - MER33 DNA MER1_type -7 317 26 469 286 8 23 chr13 82197346 82197479 -37547419 + MIR3 SINE MIR 54 184 -24 317 263 81 10 chr13 82197480 82197579 -37547319 + L2 LINE L2 3193 3298 -15 1673 151 25 14 chr13 82198188 82198472 -37546426 - AluJb SINE Alu -25 287 1 450 204 63 21 chr13 82199055 82199197 -37545701 - MER104 DNA Tc2 -29 151 4 1573 249 103 33 chr13 82199418 82200077 -37544821 - L1M4 LINE L1 -1823 4323 3619 296 177 10 188 chr13 82200753 82200849 -37544049 - Tigger5 DNA MER2_type -1 2322 2242 257 278 0 0 chr13 82200846 82200900 -37543998 - Tigger5 DNA MER2_type -2269 54 1 * 1884 116 84 0 chr13 82200900 82201220 -37543678 - L1MA8 LINE L1 -31 6260 5914 25 0 0 0 chr13 82201432 82201457 -37543441 + AT_rich Low_complexity Low_complexity 1 25 0 2175 89 10 0 chr13 82201500 82201791 -37543107 - AluSg SINE Alu -16 294 1 593 110 178 17 chr13 82203085 82203203 -37541695 - L1MA6 LINE L1 0 6300 6164 25 0 0 0 chr13 82203435 82203460 -37541438 + AT_rich Low_complexity Low_complexity 1 25 0 206 378 66 33 chr13 82203748 82203899 -37540999 - L2 LINE L2 -848 2466 2311 256 344 184 0 chr13 82204054 82204217 -37540681 + MIR3 SINE MIR 11 203 -5 567 242 47 13 chr13 82204469 82204650 -37540248 - MIR SINE MIR -65 143 1 23 0 0 0 chr13 82205310 82205333 -37539565 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 82206071 82206092 -37538806 + AT_rich Low_complexity Low_complexity 1 21 0 341 318 145 37 chr13 82206754 82206968 -37537930 - MIR SINE MIR -19 243 7 1686 179 0 22 chr13 82207877 82208195 -37536703 + AluJb SINE Alu 1 311 -1 471 291 163 15 chr13 82208207 82208403 -37536495 + MIR SINE MIR 34 258 -4 231 216 11 57 chr13 82208557 82208645 -37536253 + L1MC/D LINE L1 5361 5444 -2341 23 0 0 0 chr13 82208661 82208684 -37536214 + AT_rich Low_complexity Low_complexity 1 23 0 37 23 0 0 chr13 82209121 82209165 -37535733 + AT_rich Low_complexity Low_complexity 1 44 0 2382 90 0 0 chr13 82209678 82209979 -37534919 - AluSq SINE Alu -12 301 1 21 36 0 0 chr13 82210608 82210636 -37534262 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr13 82211583 82211617 -37533281 + AT_rich Low_complexity Low_complexity 1 34 0 829 175 44 19 chr13 82211639 82211799 -37533099 + Tigger7 DNA MER2_type 2 165 -385 1652 146 45 16 chr13 82211801 82212109 -37532789 + Tigger7 DNA MER2_type 2171 2487 0 709 319 64 36 chr13 82213051 82213660 -37531238 + L2 LINE L2 1583 2208 -1106 400 338 119 48 chr13 82213841 82214261 -37530637 + L2 LINE L2 2219 2668 -646 418 248 71 9 chr13 82214395 82214508 -37530390 + LTR67 LTR ERVL 364 483 -74 21 36 0 0 chr13 82215086 82215114 -37529784 + AT_rich Low_complexity Low_complexity 1 28 0 1869 142 7 7 chr13 82216957 82217264 -37527634 + AluSx SINE Alu 1 307 0 27 29 0 0 chr13 82218742 82218776 -37526122 + AT_rich Low_complexity Low_complexity 1 34 0 1910 141 51 96 chr13 82218866 82218921 -37525977 + MSTB LTR MaLR 1 57 -318 2141 122 0 0 chr13 82218921 82219232 -37525666 + AluSx SINE Alu 1 311 -1 1910 141 51 96 chr13 82219232 82219622 -37525276 + MSTB LTR MaLR 57 375 0 2323 84 3 7 chr13 82219812 82220122 -37524776 - AluY SINE Alu -2 309 1 30 89 0 0 chr13 82220862 82220941 -37523957 + AT_rich Low_complexity Low_complexity 1 79 0 1863 249 116 26 chr13 82221588 82221826 -37523072 - L1ME1 LINE L1 -9 6157 5942 2055 113 0 26 chr13 82221826 82222136 -37522762 + AluSx SINE Alu 3 304 -8 1863 249 116 26 chr13 82222136 82222577 -37522321 - L1ME1 LINE L1 -224 5942 5417 184 257 0 0 chr13 82223419 82223454 -37521444 - MIR SINE MIR -19 243 209 2057 124 0 7 chr13 82223795 82224102 -37520796 + AluSg SINE Alu 1 305 -5 32 75 0 0 chr13 82224130 82224197 -37520701 + AT_rich Low_complexity Low_complexity 1 67 0 394 105 64 18 chr13 82224494 82224665 -37520233 + (TA)n Simple_repeat Simple_repeat 1 179 0 22 70 0 0 chr13 82224665 82224708 -37520190 + AT_rich Low_complexity Low_complexity 1 43 0 340 48 88 24 chr13 82224808 82224933 -37519965 + (TA)n Simple_repeat Simple_repeat 2 134 0 1842 142 0 57 chr13 82225366 82225684 -37519214 + AluSx SINE Alu 2 301 -11 509 111 41 18 chr13 82226187 82226358 -37518540 + (TA)n Simple_repeat Simple_repeat 2 176 0 2155 113 7 0 chr13 82226358 82226649 -37518249 - AluSq SINE Alu -20 293 1 254 252 29 10 chr13 82226874 82226977 -37517921 + (TA)n Simple_repeat Simple_repeat 1 105 0 477 295 139 6 chr13 82227156 82227322 -37517576 - MIR SINE MIR -52 210 23 1470 193 30 27 chr13 82227377 82227673 -37517225 - AluJo SINE Alu -11 301 5 2502 195 77 10 chr13 82227958 82228475 -37516423 + MER68 LTR ERV1 11 562 0 1797 109 61 64 chr13 82228823 82229134 -37515764 + AluSx SINE Alu 1 310 -2 2178 108 3 0 chr13 82229621 82229918 -37514980 - AluSx SINE Alu -14 298 1 1627 163 13 46 chr13 82230430 82230737 -37514161 + AluJo SINE Alu 1 297 -15 1027 258 124 33 chr13 82230996 82231570 -37513328 + L1MC4a LINE L1 5315 5940 -1868 2440 119 45 0 chr13 82231688 82232092 -37512806 - L1MA5 LINE L1 -16 6284 5863 464 253 57 44 chr13 82232300 82232458 -37512440 - MIR SINE MIR -101 161 2 22 99 0 0 chr13 82233360 82233431 -37511467 + AT_rich Low_complexity Low_complexity 1 71 0 928 316 114 31 chr13 82233831 82234373 -37510525 + L3 LINE CR1 898 1484 -93 396 275 52 139 chr13 82234744 82235239 -37509659 - L2 LINE L2 0 3313 2862 1559 179 19 26 chr13 82235423 82235736 -37509162 - AluJo SINE Alu -1 311 1 23 0 0 0 chr13 82236203 82236226 -37508672 + AT_rich Low_complexity Low_complexity 1 23 0 476 155 184 36 chr13 82236725 82236893 -37508005 - Charlie1 DNA MER1_type 0 2761 2569 384 253 175 42 chr13 82236977 82237143 -37507755 - MLT1K LTR MaLR -124 464 277 1048 165 41 72 chr13 82237253 82237561 -37507337 - Charlie1 DNA MER1_type -189 2572 5 23 0 0 0 chr13 82237586 82237609 -37507289 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr13 82237770 82237790 -37507108 + (A)n Simple_repeat Simple_repeat 1 20 0 1911 92 8 0 chr13 82239322 82239573 -37505325 - AluSx SINE Alu -58 254 2 560 169 11 0 chr13 82240720 82240809 -37504089 - 5S rRNA rRNA -30 91 2 1062 246 78 15 chr13 82241427 82241760 -37503138 + L1ME2 LINE L1 5785 6138 -26 312 208 252 13 chr13 82241817 82241976 -37502922 + L1MC4 LINE L1 7844 8040 -2 1994 122 7 0 chr13 82242615 82242902 -37501996 - AluSx SINE Alu -23 289 1 348 267 20 7 chr13 82243093 82243239 -37501659 + (TTATA)n Simple_repeat Simple_repeat 2 149 0 190 241 287 11 chr13 82243407 82243494 -37501404 + L2 LINE L2 2958 3068 -204 185 361 82 0 chr13 82243547 82243608 -37501290 + L2 LINE L2 3199 3264 -49 2449 40 10 0 chr13 82243841 82244137 -37500761 - AluY SINE Alu -12 299 1 237 122 20 41 chr13 82244492 82244541 -37500357 + MLT1G3 LTR MaLR 255 302 -228 2099 121 7 0 chr13 82246169 82246474 -37498424 - AluSx SINE Alu -5 307 1 2127 113 3 35 chr13 82246535 82246846 -37498052 - AluSq SINE Alu -12 301 1 357 258 45 38 chr13 82247577 82247709 -37497189 - LTR16B LTR ERVL -13 451 319 331 325 35 0 chr13 82247821 82247935 -37496963 - LTR16A LTR ERVL -323 127 10 320 0 25 0 chr13 82248055 82248095 -37496803 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1674 131 19 8 chr13 82248095 82248355 -37496543 - AluSx SINE Alu -32 280 18 218 192 0 19 chr13 82249467 82249519 -37495379 + (CCG)n Simple_repeat Simple_repeat 2 52 0 1013 166 63 56 chr13 82250967 82251269 -37493629 + L1MB3 LINE L1 5871 6174 -9 196 351 99 49 chr13 82251545 82251890 -37493008 + L2 LINE L2 2546 2907 -407 1273 205 93 38 chr13 82251896 82252316 -37492582 - LTR47B LTR ERVL 0 443 1 2527 206 49 49 chr13 82252605 82253257 -37491641 + MER82 DNA MER2_type 1 652 -1 371 306 106 70 chr13 82254247 82254464 -37490434 - L1 LINE L1 -1033 5113 4905 1863 146 58 0 chr13 82254464 82254759 -37490139 - AluSx SINE Alu 0 312 1 371 306 106 70 chr13 82254759 82254978 -37489920 - L1 LINE L1 -1241 4905 4695 1881 123 18 7 chr13 82254978 82255255 -37489643 + AluSx SINE Alu 1 280 -32 333 0 0 0 chr13 82255255 82255292 -37489606 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 371 306 106 70 chr13 82255292 82255398 -37489500 - L1 LINE L1 -1450 4696 4548 341 316 35 0 chr13 82255412 82255526 -37489372 + LTR16A LTR ERVL 10 127 -323 387 250 45 38 chr13 82255638 82255770 -37489128 + LTR16B LTR ERVL 319 451 -13 2140 112 3 35 chr13 82256501 82256814 -37488084 + AluSq SINE Alu 1 303 -10 2034 130 10 0 chr13 82256875 82257167 -37487731 + AluSx SINE Alu 1 295 -17 1742 168 26 19 chr13 82257169 82257478 -37487420 - AluSx SINE Alu -1 311 1 348 218 100 47 chr13 82257750 82257920 -37486978 + L1MC5 LINE L1 7747 7925 -36 418 259 98 0 chr13 82257994 82258106 -37486792 + L2 LINE L2 3191 3313 0 841 244 85 30 chr13 82258767 82259082 -37485816 - MLT1I LTR MaLR 0 409 76 895 156 50 148 chr13 82259337 82259600 -37485298 + MER33 DNA MER1_type 1 221 -2364 2170 114 0 10 chr13 82259600 82259898 -37485000 - AluSx SINE Alu -17 295 1 895 156 50 148 chr13 82259898 82259992 -37484906 + MER33 DNA MER1_type 221 323 -1 220 307 80 0 chr13 82260512 82260600 -37484298 - L2 LINE L2 -653 2661 2567 * 775 310 171 48 chr13 82260594 82261378 -37483520 + L2 LINE L2 1675 2554 -760 388 232 327 6 chr13 82261525 82261693 -37483205 - MIR SINE MIR -33 229 8 326 260 130 59 chr13 82262021 82262190 -37482708 + L2 LINE L2 2888 3068 -204 184 361 82 0 chr13 82262243 82262304 -37482594 + L2 LINE L2 3199 3264 -49 2486 40 10 0 chr13 82262536 82262832 -37482066 - AluY SINE Alu -12 299 1 227 122 20 41 chr13 82263256 82263305 -37481593 + MLT1G3 LTR MaLR 255 302 -228 306 391 0 8 chr13 82264435 82264563 -37480335 - MIR3 SINE MIR -15 193 67 216 0 0 0 chr13 82265131 82265155 -37479743 + (TG)n Simple_repeat Simple_repeat 2 25 0 1919 221 124 12 chr13 82265546 82266052 -37478846 - MLT1F1 LTR MaLR 0 567 5 899 191 60 0 chr13 82266149 82266364 -37478534 + MER63 DNA MER1_type 1 228 -833 * 1541 236 77 0 chr13 82266352 82266767 -37478131 + MER63 DNA MER1_type 614 1060 0 1486 127 0 14 chr13 82267235 82267448 -37477450 + AluSx SINE Alu 1 210 -102 189 74 0 0 chr13 82267480 82267507 -37477391 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1824 169 10 29 chr13 82268180 82268493 -37476405 - AluJo SINE Alu -1 311 5 2221 121 7 3 chr13 82268758 82269065 -37475833 - AluSq SINE Alu -5 308 1 339 251 68 68 chr13 82269067 82269406 -37475492 - L1MC4a LINE L1 -1797 6011 5673 919 284 268 28 chr13 82270180 82271192 -37473706 - L2 LINE L2 -232 3081 1822 727 183 56 0 chr13 82271196 82271338 -37473560 + MIR SINE MIR 6 155 -107 245 195 110 110 chr13 82272019 82272101 -37472797 - L2 LINE L2 -5 3267 3186 284 344 107 52 chr13 82272155 82272486 -37472412 - L2 LINE L2 -209 3063 2724 331 269 194 6 chr13 82273091 82273251 -37471647 + MIR SINE MIR 14 203 -59 361 262 115 8 chr13 82273380 82273502 -37471396 - MIR SINE MIR -40 222 88 822 183 129 107 chr13 82274385 82274741 -37470157 + MLT1A1 LTR MaLR 1 364 -1 286 279 76 0 chr13 82275650 82275729 -37469169 - MIR SINE MIR -177 85 1 1312 266 82 13 chr13 82277068 82277245 -37467653 - L1MCc LINE L1 -1780 5161 4998 1906 101 4 25 chr13 82277245 82277521 -37467377 - AluY SINE Alu -3 308 39 1312 266 82 13 chr13 82277521 82277748 -37467150 - L1MCc LINE L1 -1943 4998 4788 2127 128 7 3 chr13 82277748 82278053 -37466845 - AluSx SINE Alu -6 306 1 1312 266 82 13 chr13 82278053 82278195 -37466703 - L1MCc LINE L1 -2153 4788 4576 564 280 103 18 chr13 82278212 82278751 -37466147 - L1MCc LINE L1 -2508 4433 3831 358 246 81 47 chr13 82278744 82279065 -37465833 - L1MCc LINE L1 -4812 2310 1979 * 1441 191 34 50 chr13 82279184 82279482 -37465416 - AluJo SINE Alu -6 306 14 806 278 65 11 chr13 82279508 82279986 -37464912 - L1MCc LINE L1 -4887 1536 1129 2078 130 7 0 chr13 82280019 82280320 -37464578 + AluSx SINE Alu 1 303 -9 5656 149 44 3 chr13 82280320 82281425 -37463473 - MER50-int LTR ERV1 -5974 1231 1 1251 142 14 5 chr13 82281426 82281637 -37463261 - MER50 LTR ERV1 -23 711 499 230 325 52 59 chr13 82281860 82282266 -37462632 - L1MCc LINE L1 -5987 436 34 343 154 55 66 chr13 82282345 82282527 -37462371 + (TA)n Simple_repeat Simple_repeat 1 180 0 570 98 0 0 chr13 82282714 82282796 -37462102 + (TA)n Simple_repeat Simple_repeat 2 83 0 2227 102 3 0 chr13 82282796 82283089 -37461809 - AluSx SINE Alu -18 294 1 1981 149 3 7 chr13 82283326 82283628 -37461270 - AluJb SINE Alu -11 301 1 1518 176 24 51 chr13 82283714 82284089 -37460809 - MLT1A1 LTR MaLR 0 365 1 837 145 61 98 chr13 82284246 82284460 -37460438 - Charlie4 DNA MER1_type -1755 206 1 2999 121 40 5 chr13 82285264 82285758 -37459140 - MER1A DNA MER1_type 0 529 1 437 255 62 7 chr13 82285975 82286120 -37458778 + LTR16A1 LTR ERVL 266 418 -39 1580 126 0 94 chr13 82286127 82286169 -37458729 + AluSx SINE Alu 1 45 -267 3614 70 9 0 chr13 82286169 82286623 -37458275 + LTR22A LTR ERVK 1 458 0 1580 126 0 94 chr13 82286623 82286857 -37458041 + AluSx SINE Alu 45 251 -61 266 188 94 0 chr13 82286859 82286923 -37457975 + LTR16A1 LTR ERVL 388 457 0 2426 100 0 0 chr13 82287694 82288003 -37456895 + AluSc SINE Alu 1 309 0 1859 138 36 51 chr13 82288554 82288945 -37455953 - MLT1B LTR MaLR -5 385 1 22 56 0 0 chr13 82289017 82289053 -37455845 + AT_rich Low_complexity Low_complexity 1 36 0 205 157 17 78 chr13 82289349 82289464 -37455434 + (TATAA)n Simple_repeat Simple_repeat 4 111 0 337 347 21 5 chr13 82289810 82290000 -37454898 + ERVL LTR ERVL 5239 5431 -333 425 242 30 15 chr13 82290292 82290424 -37454474 + LTR41 LTR ERVL 6 139 -634 1857 145 7 33 chr13 82290637 82290941 -37453957 - AluSx SINE Alu -16 296 1 269 197 66 0 chr13 82291205 82291281 -37453617 + LTR50 LTR ERVL 713 793 -2 614 239 213 0 chr13 82291956 82292111 -37452787 - MER5A DNA MER1_type -1 188 1 781 177 17 11 chr13 82293454 82293629 -37451269 + MER105 DNA DNA 6 181 -23 1401 178 184 3 chr13 82293677 82293986 -37450912 + MLT1A1 LTR MaLR 1 365 0 358 218 16 105 chr13 82294069 82294193 -37450705 + MER69 DNA AcHobo 29 2490 -36 542 168 0 8 chr13 82294479 82294598 -37450300 + CT-rich Low_complexity Low_complexity 4 121 0 243 295 0 0 chr13 82294613 82294674 -37450224 + GA-rich Low_complexity Low_complexity 4 64 0 219 114 0 0 chr13 82294790 82294825 -37450073 + (TG)n Simple_repeat Simple_repeat 2 36 0 1428 191 4 0 chr13 82295279 82295531 -37449367 + L1PB4 LINE L1 5897 6149 -7 195 42 0 0 chr13 82296491 82296515 -37448383 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1329 207 174 33 chr13 82296686 82297199 -37447699 + MER34C LTR ERV1 1 585 0 1356 257 104 50 chr13 82297613 82298691 -37446207 + HAL1 LINE L1 995 2174 -333 247 378 0 0 chr13 82298693 82298791 -37446107 + L2 LINE L2 3173 3270 -2 395 277 82 11 chr13 82298873 82299057 -37445841 + HAL1 LINE L1 2181 2377 -130 3626 152 45 15 chr13 82299074 82299556 -37445342 - LTR51 LTR ERV1 0 671 164 1988 128 49 0 chr13 82299556 82299844 -37445054 - AluSx SINE Alu -10 302 1 3626 152 45 15 chr13 82299844 82300013 -37444885 - LTR51 LTR ERV1 -507 164 1 517 264 5 108 chr13 82300410 82300622 -37444276 - MER91B DNA MER1_type 0 190 1 180 0 0 0 chr13 82300741 82300761 -37444137 + (T)n Simple_repeat Simple_repeat 1 20 0 659 311 72 8 chr13 82301006 82301241 -37443657 + MIR SINE MIR 13 262 0 465 282 85 73 chr13 82301306 82301565 -37443333 - MLT1J LTR MaLR -20 491 230 1013 221 57 54 chr13 82302296 82302613 -37442285 - MER99 DNA DNA -100 728 411 839 111 53 23 chr13 82302675 82302846 -37442052 - MER53 DNA DNA -2 187 12 666 196 0 15 chr13 82302940 82303073 -37441825 - FLAM_A SINE Alu -1 141 11 2231 109 6 3 chr13 82303328 82303639 -37441259 + AluSq SINE Alu 1 312 -1 271 205 52 71 chr13 82303833 82303936 -37440962 + MER5A DNA MER1_type 3 113 -65 237 323 98 71 chr13 82303998 82304394 -37440504 + L2 LINE L2 2566 2972 -342 285 373 62 31 chr13 82304395 82304588 -37440310 + L2 LINE L2 3074 3272 0 21 0 0 0 chr13 82304609 82304630 -37440268 + AT_rich Low_complexity Low_complexity 1 21 0 2189 72 58 0 chr13 82304630 82304906 -37439992 + AluSc SINE Alu 1 292 -17 345 189 14 14 chr13 82305052 82305126 -37439772 + Charlie4 DNA MER1_type 1888 1961 0 402 240 22 13 chr13 82305235 82305394 -37439504 - L1MB8 LINE L1 -1 6177 6018 1503 121 38 8 chr13 82305574 82305838 -37439060 + L1MA4A LINE L1 6028 6299 -4 1820 213 11 3 chr13 82305855 82306230 -37438668 + L1MC4 LINE L1 7192 7569 -473 1149 153 0 23 chr13 82306238 82306415 -37438483 + AluJo SINE Alu 5 177 -135 1813 104 4 4 chr13 82306453 82306702 -37438196 + AluSc SINE Alu 43 291 -18 746 187 27 0 chr13 82306778 82306928 -37437970 + L1MC4 LINE L1 7728 7881 -161 4071 200 31 34 chr13 82306944 82307915 -37436983 - L1MA9 LINE L1 -38 6274 5307 546 184 60 42 chr13 82307888 82307933 -37436965 + L1MC4 LINE L1 7865 7908 -134 * 186 43 0 0 chr13 82307933 82307956 -37436942 + (TG)n Simple_repeat Simple_repeat 1 23 0 546 184 60 42 chr13 82307956 82308078 -37436820 + L1MC4 LINE L1 7908 8035 -7 182 330 128 37 chr13 82308395 82308504 -37436394 + MIR3 SINE MIR 15 133 -75 951 333 81 19 chr13 82308919 82309400 -37435498 + MLT1K LTR MaLR 14 524 -64 278 164 0 16 chr13 82309413 82309474 -37435424 + CT-rich Low_complexity Low_complexity 5 64 0 617 307 17 45 chr13 82309520 82309807 -37435091 + MLT1J LTR MaLR 1 279 -232 6491 157 207 35 chr13 82309817 82311289 -37433609 - MER52A LTR ERV1 -29 1726 1 264 320 141 16 chr13 82311289 82311417 -37433481 + MLT1J LTR MaLR 276 419 -92 302 167 0 0 chr13 82311967 82312021 -37432877 + L1MC4 LINE L1 89 142 -5928 3020 146 18 6 chr13 82312061 82312576 -37432322 + L1MC1 LINE L1 5807 6327 -6 1098 267 147 10 chr13 82312601 82313414 -37431484 + L1MC4 LINE L1 568 1537 -4724 1405 190 158 16 chr13 82313417 82313859 -37431039 + L1ME2 LINE L1 5646 6150 -14 273 316 35 9 chr13 82314493 82314607 -37430291 - L1MEd LINE L1 -5905 214 98 520 318 126 28 chr13 82314619 82315223 -37429675 + L1MC4 LINE L1 2921 3583 -2497 484 276 51 67 chr13 82315356 82315399 -37429499 + L1MC4 LINE L1 3734 3776 -2304 2934 118 4 16 chr13 82315399 82315849 -37429049 - MER65A LTR ERV1 0 445 1 484 276 51 67 chr13 82315849 82316254 -37428644 + L1MC4 LINE L1 3776 4175 -1905 25 75 0 0 chr13 82316456 82316509 -37428389 + AT_rich Low_complexity Low_complexity 1 53 0 1677 251 95 42 chr13 82316731 82317776 -37427122 + L1MC4 LINE L1 4846 5333 -747 2268 119 3 3 chr13 82317778 82318090 -37426808 + AluSq SINE Alu 1 312 -1 330 222 67 44 chr13 82318374 82318464 -37426434 - L2 LINE L2 -681 2633 2542 6031 211 75 23 chr13 82318856 82318908 -37425990 + L1MC1 LINE L1 3502 3550 -2783 1681 204 70 8 chr13 82318908 82319281 -37425617 - MSTD LTR MaLR 0 396 1 6031 211 75 23 chr13 82319281 82321543 -37423355 + L1MC1 LINE L1 3550 5922 -411 419 246 64 27 chr13 82321716 82322006 -37422892 + HAL1b LINE L1 1007 1335 -13 631 260 49 16 chr13 82322040 82322286 -37422612 + L1ME4a LINE L1 5622 5875 -246 1653 178 17 10 chr13 82322989 82323282 -37421616 - AluJo SINE Alu -16 296 2 1485 201 57 3 chr13 82323593 82323927 -37420971 + L1MC4 LINE L1 6834 7185 -791 1446 221 99 52 chr13 82323934 82324419 -37420479 + L1MC4 LINE L1 7467 7974 -2 195 409 94 0 chr13 82324507 82324678 -37420220 + L2 LINE L2 249 435 -2879 254 340 142 55 chr13 82325425 82326158 -37418740 + L2 LINE L2 1346 2142 -1172 255 374 47 0 chr13 82326391 82326498 -37418400 + MIR SINE MIR 19 130 -78 307 261 14 0 chr13 82326534 82326603 -37418295 - L2 LINE L2 0 3272 3203 339 191 24 0 chr13 82327194 82327278 -37417620 - L1MC1 LINE L1 -57 6276 6191 204 67 0 0 chr13 82328427 82328457 -37416441 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2039 113 18 0 chr13 82328460 82328743 -37416155 - AluSx SINE Alu -24 288 1 361 247 31 0 chr13 82328902 82328999 -37415899 - MER103 DNA DNA -50 116 17 275 335 160 21 chr13 82329193 82329387 -37415511 + MIR SINE MIR 16 236 -26 546 319 65 22 chr13 82329392 82329624 -37415274 - LTR40a LTR ERVL -29 490 249 301 167 67 0 chr13 82330368 82330383 -37414515 - MER46A DNA MER2_type -74 162 144 875 122 99 6 chr13 82330383 82330650 -37414248 + MER46B DNA MER2_type 2 236 0 301 270 26 52 chr13 82330958 82331073 -37413825 - L1ME2 LINE L1 -10 6154 6043 350 131 33 0 chr13 82331089 82331150 -37413748 + MER58A DNA MER1_type 37 99 -8 268 242 45 0 chr13 82331166 82331232 -37413666 + Tigger3(Golem) DNA MER2_type 1 69 -2960 * 1032 105 52 23 chr13 82331228 82331400 -37413498 + Tigger3(Golem) DNA MER2_type 2788 2964 -65 782 229 34 0 chr13 82331373 82331548 -37413350 - MLT1A2 LTR MaLR -193 181 1 * 2018 145 108 106 chr13 82331577 82332171 -37412727 - L1ME2 LINE L1 -111 6053 5459 280 277 208 0 chr13 82333133 82333263 -37411635 - L2 LINE L2 -49 3264 3108 515 307 101 11 chr13 82333315 82333494 -37411404 - MIR SINE MIR -21 241 47 700 263 200 21 chr13 82333494 82333994 -37410904 - MLT1H1 LTR MaLR 0 555 1 307 208 0 0 chr13 82334318 82334371 -37410527 - MER45C DNA AcHobo -1 952 900 * 509 332 144 5 chr13 82334367 82334569 -37410329 - MER45C DNA AcHobo -320 633 404 1026 243 9 14 chr13 82334637 82334851 -37410047 - MER45C DNA AcHobo -740 213 1 921 223 58 0 chr13 82334904 82335110 -37409788 - MER58A DNA MER1_type -4 220 3 572 302 60 42 chr13 82335391 82335676 -37409222 + L2 LINE L2 3024 3313 0 209 393 0 0 chr13 82336015 82336076 -37408822 - MER91B DNA MER1_type -129 61 1 1382 184 76 11 chr13 82336991 82337268 -37407630 - AluJb SINE Alu -17 295 1 277 380 62 62 chr13 82337412 82337786 -37407112 + L2 LINE L2 2899 3272 0 241 315 157 0 chr13 82338118 82338207 -37406691 - MIR3 SINE MIR -24 184 82 22 0 0 0 chr13 82338665 82338687 -37406211 + AT_rich Low_complexity Low_complexity 1 22 0 384 303 80 31 chr13 82338722 82338884 -37406014 + MIR SINE MIR 21 190 -72 958 258 152 44 chr13 82338901 82339374 -37405524 - HAL1 LINE L1 -335 2172 1649 353 244 76 32 chr13 82339395 82339645 -37405253 - L1MEc LINE L1 -2812 3403 3143 1381 274 157 29 chr13 82339686 82340049 -37404849 - L1MEc LINE L1 -3372 2843 2528 532 55 0 121 chr13 82340049 82340140 -37404758 + MADE1 DNA Mariner 1 80 0 1381 274 157 29 chr13 82340140 82341245 -37403653 - L1MEc LINE L1 -3687 2528 1247 783 236 60 16 chr13 82341507 82341757 -37403141 + MIR SINE MIR 1 261 -1 1743 174 40 56 chr13 82341857 82342253 -37402645 + MLT1B LTR MaLR 1 390 0 2138 104 10 3 chr13 82342431 82342719 -37402179 + AluSp SINE Alu 1 290 -23 186 43 0 0 chr13 82342722 82342745 -37402153 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 594 178 2 64 chr13 82342811 82342968 -37401930 - MER3 DNA MER1_type -90 119 1 485 206 11 0 chr13 82343089 82343181 -37401717 + FLAM_A SINE Alu 1 93 -49 191 143 0 24 chr13 82343184 82343226 -37401672 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 29 47 0 0 chr13 82343443 82343486 -37401412 + AT_rich Low_complexity Low_complexity 1 43 0 992 100 0 0 chr13 82343488 82343618 -37401280 + AluSg/x SINE Alu 165 294 -18 837 180 0 44 chr13 82343630 82343813 -37401085 - L1MC5 LINE L1 -65 7896 7722 1741 176 48 28 chr13 82343813 82344119 -37400779 + MLT1A1 LTR MaLR 1 316 -49 1884 114 86 16 chr13 82344119 82344434 -37400464 + MER1B DNA MER1_type 1 337 0 1741 176 48 28 chr13 82344434 82344485 -37400413 + MLT1A1 LTR MaLR 316 365 0 271 143 27 98 chr13 82344485 82344597 -37400301 - L1MC5 LINE L1 -235 7726 7623 3449 78 60 2 chr13 82344997 82345482 -37399416 + L1P LINE L1 4503 5015 -1131 21 0 0 0 chr13 82345638 82345659 -37399239 + AT_rich Low_complexity Low_complexity 1 21 0 338 42 21 0 chr13 82346093 82346141 -37398757 + (CA)n Simple_repeat Simple_repeat 2 50 0 1397 236 45 26 chr13 82346688 82347069 -37397829 + MLT2C1 LTR ERVL 8 395 -2 624 321 108 9 chr13 82348096 82348494 -37396404 - LTR16A LTR ERVL 0 491 8 417 278 41 47 chr13 82349086 82349255 -37395643 + MIR SINE MIR 71 238 -24 988 168 0 0 chr13 82350496 82350663 -37394235 + FAM SINE Alu 1 48 -1 1209 164 5 0 chr13 82350669 82350876 -37394022 + L1MC1 LINE L1 6016 6223 -110 461 298 74 16 chr13 82351474 82351670 -37393228 - MIR SINE MIR -12 250 45 1970 188 11 47 chr13 82351698 82352216 -37392682 + L1MB3 LINE L1 5715 6179 -4 2605 240 63 41 chr13 82353126 82353534 -37391364 + L1ME3A LINE L1 5284 5681 -489 2529 176 24 15 chr13 82353534 82353995 -37390903 + MLT1C LTR MaLR 3 467 0 2605 240 63 41 chr13 82353995 82354450 -37390448 + L1ME3A LINE L1 5681 6165 -5 420 239 117 61 chr13 82354474 82354671 -37390227 + MIR SINE MIR 55 262 0 22 35 0 0 chr13 82354920 82354949 -37389949 + AT_rich Low_complexity Low_complexity 1 29 0 386 306 28 21 chr13 82355013 82355157 -37389741 - MIR SINE MIR -59 203 59 1137 187 0 39 chr13 82355210 82355440 -37389458 - AluJo SINE Alu -11 301 81 852 172 0 0 chr13 82355441 82355569 -37389329 - FRAM SINE Alu -36 140 13 1074 167 56 0 chr13 82355621 82355819 -37389079 + MER3 DNA MER1_type 1 209 0 325 228 22 4 chr13 82356345 82356438 -37388460 + MIR3 SINE MIR 73 170 -38 240 111 0 0 chr13 82356607 82356643 -37388255 + (TG)n Simple_repeat Simple_repeat 1 36 0 2319 59 0 0 chr13 82356661 82356951 -37387947 - L1PA6 LINE L1 -5 6149 5860 646 232 52 70 chr13 82357054 82357277 -37387621 - HAL1b LINE L1 -479 869 652 2823 0 0 3 chr13 82357277 82357583 -37387315 - AluYa5 SINE Alu -6 305 1 646 232 52 70 chr13 82357583 82357687 -37387211 - HAL1b LINE L1 -696 652 548 25 0 0 0 chr13 82357717 82357742 -37387156 + AT_rich Low_complexity Low_complexity 1 25 0 475 287 59 35 chr13 82358171 82358312 -37386586 - L1ME LINE L1 -422 5740 5591 3691 83 55 8 chr13 82358312 82358841 -37386057 - MER41A LTR ERV1 0 554 1 475 287 59 35 chr13 82358841 82358901 -37385997 - L1ME LINE L1 -571 5591 5534 3147 128 50 60 chr13 82359072 82359637 -37385261 - MER4B LTR ERV1 0 610 50 2760 78 47 62 chr13 82359637 82360088 -37384810 - MLT2A1 LTR ERVL 0 444 1 3147 128 50 60 chr13 82360088 82360138 -37384760 - MER4B LTR ERV1 -560 50 1 3118 116 53 38 chr13 82360426 82360718 -37384180 - LTR49 LTR ERV1 0 595 309 2238 101 0 26 chr13 82360718 82361026 -37383872 + AluSx SINE Alu 1 300 -12 3118 116 53 38 chr13 82361026 82361317 -37383581 - LTR49 LTR ERV1 -286 309 3 255 330 102 58 chr13 82361703 82361909 -37382989 - L2 LINE L2 -30 3242 3028 2749 145 63 28 chr13 82362383 82362887 -37382011 - LTR45 LTR ERV1 0 525 4 383 20 20 0 chr13 82364163 82364213 -37380685 - MADE1 DNA Mariner 0 80 30 293 370 87 23 chr13 82364396 82364661 -37380237 - L2 LINE L2 -69 3244 2963 1749 151 80 6 chr13 82364975 82365299 -37379599 - MER7A DNA MER2_type 0 346 1 232 313 47 0 chr13 82365962 82366026 -37378872 - L3 LINE CR1 -7 1570 1504 287 337 128 27 chr13 82366152 82366254 -37378644 - L3 LINE CR1 -79 1498 1408 216 0 0 0 chr13 82366254 82366278 -37378620 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1395 146 146 4 chr13 82366281 82366528 -37378370 - AluJb SINE Alu -30 282 1 287 337 128 27 chr13 82366528 82366608 -37378290 - L3 LINE CR1 -170 1407 1293 1717 192 10 3 chr13 82368806 82369114 -37375784 - AluJb SINE Alu 0 312 3 24 32 0 0 chr13 82369252 82369283 -37375615 + AT_rich Low_complexity Low_complexity 1 31 0 326 250 39 100 chr13 82369507 82369687 -37375211 + MIR SINE MIR 32 200 -62 2143 113 0 35 chr13 82369792 82370110 -37374788 - AluSx SINE Alu -5 307 1 315 211 154 48 chr13 82370346 82370450 -37374448 + L2 LINE L2 2351 2465 -849 21 0 0 0 chr13 82370759 82370780 -37374118 + AT_rich Low_complexity Low_complexity 1 21 0 289 224 19 47 chr13 82371085 82371192 -37373706 + L1MC4 LINE L1 6600 6703 -1339 2398 76 0 19 chr13 82371821 82372137 -37372761 - AluY SINE Alu -1 310 1 22 35 0 0 chr13 82372350 82372379 -37372519 + AT_rich Low_complexity Low_complexity 1 29 0 1105 274 50 27 chr13 82372472 82372953 -37371945 - MLT1G3 LTR MaLR -12 583 5 337 231 137 43 chr13 82372970 82373087 -37371811 + L2 LINE L2 2338 2465 -849 14842 143 31 16 chr13 82373115 82373220 -37371678 - Tigger7 DNA MER2_type -8 2479 2377 2281 110 3 0 chr13 82373220 82373529 -37371369 - AluSq SINE Alu -3 310 1 14842 143 31 16 chr13 82373529 82375864 -37369034 - Tigger7 DNA MER2_type -110 2377 1 653 266 195 60 chr13 82376081 82376593 -37368305 - L2 LINE L2 -703 2611 2031 198 367 46 9 chr13 82376651 82376760 -37368138 - L2 LINE L2 -1224 2090 1978 540 286 51 51 chr13 82376772 82377006 -37367892 - MIR SINE MIR -1 261 28 370 359 0 8 chr13 82377036 82377164 -37367734 - L2 LINE L2 -1391 1923 1797 229 314 72 31 chr13 82377169 82377363 -37367535 + L1ME LINE L1 5717 5918 -203 6268 133 85 7 chr13 82377480 82377997 -37366901 + Tigger3b DNA MER2_type 3 478 -2550 1631 161 30 26 chr13 82377997 82378302 -37366596 + AluJb SINE Alu 7 312 0 6268 133 85 7 chr13 82378302 82378924 -37365974 + Tigger3b DNA MER2_type 478 1231 0 255 365 47 0 chr13 82379120 82379227 -37365671 - MIR SINE MIR -67 141 30 2092 127 43 0 chr13 82379839 82380163 -37364735 - Tigger1 DNA MER2_type -3 2415 2078 1113 176 70 41 chr13 82380182 82380426 -37364472 - AluJo SINE Alu -61 251 1 10546 117 27 1 chr13 82380429 82382025 -37362873 - Tigger1 DNA MER2_type -325 2093 456 1620 193 25 19 chr13 82382024 82382340 -37362558 - Tigger1 DNA MER2_type -2099 319 2 * 259 258 45 45 chr13 82382781 82382870 -37362028 + MIR SINE MIR 35 123 -139 1018 170 31 15 chr13 82383576 82383918 -37360980 + Tigger2 DNA MER2_type 11 2714 -4 421 309 126 5 chr13 82384040 82384231 -37360667 + L2 LINE L2 833 1046 -2268 207 0 0 0 chr13 82384360 82384383 -37360515 + (T)n Simple_repeat Simple_repeat 1 23 0 921 139 64 0 chr13 82385751 82385923 -37358975 + L1MA8 LINE L1 6109 6291 0 1549 160 7 87 chr13 82386759 82387059 -37357839 + AluJo SINE Alu 9 284 -28 1998 139 3 14 chr13 82387125 82387420 -37357478 - AluSx SINE Alu -20 292 1 28 29 0 0 chr13 82387514 82387549 -37357349 + AT_rich Low_complexity Low_complexity 1 35 0 2337 133 48 38 chr13 82387853 82388274 -37356624 - MSTA LTR MaLR -1 427 3 2653 158 17 19 chr13 82388276 82388607 -37356291 - MSTA-int LTR MaLR 0 1651 1320 1975 127 18 0 chr13 82388607 82388891 -37356007 - AluSx SINE Alu -23 289 1 2653 158 17 19 chr13 82388891 82389039 -37355859 - MSTA-int LTR MaLR -331 1320 1173 378 263 0 0 chr13 82389039 82389119 -37355779 - LTR40a LTR ERVL -439 80 1 698 239 60 74 chr13 82389120 82389457 -37355441 - L1MC/D LINE L1 -673 5639 5444 38 68 0 0 chr13 82391393 82391466 -37353432 + AT_rich Low_complexity Low_complexity 1 73 0 1048 117 17 100 chr13 82392382 82392612 -37352286 - L1MC/D LINE L1 -2445 5597 5387 2268 109 0 0 chr13 82392883 82393186 -37351712 - AluSx SINE Alu -9 303 1 312 273 107 20 chr13 82393957 82394107 -37350791 + MIR SINE MIR 100 262 0 919 194 16 16 chr13 82395158 82395349 -37349549 - MER105 DNA DNA -10 194 4 372 279 111 41 chr13 82395580 82395752 -37349146 - MIR SINE MIR 0 262 79 1877 116 35 3 chr13 82395753 82396037 -37348861 - AluSx SINE Alu -19 293 1 32 57 0 0 chr13 82397048 82397101 -37347797 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr13 82400286 82400309 -37344589 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr13 82400429 82400464 -37344434 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr13 82401316 82401357 -37343541 + AT_rich Low_complexity Low_complexity 1 41 0 242 211 0 0 chr13 82403183 82403240 -37341658 - L1MC4 LINE L1 -1337 6705 6649 21 36 0 0 chr13 82403311 82403339 -37341559 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 82404146 82404176 -37340722 + AT_rich Low_complexity Low_complexity 1 30 0 465 248 72 8 chr13 82405316 82405441 -37339457 - MER94 DNA DNA 0 134 2 22 0 0 0 chr13 82407336 82407358 -37337540 + GC_rich Low_complexity Low_complexity 1 22 0 183 354 93 31 chr13 82407468 82407629 -37337269 - L2 LINE L2 -109 3163 2993 2226 109 0 0 chr13 82408546 82408871 -37336027 + AluSx SINE Alu 1 325 0 2322 199 10 77 chr13 82408976 82409570 -37335328 - MLT2B3 LTR ERVL 0 554 1 270 82 82 16 chr13 82410178 82410239 -37334659 + CT-rich Low_complexity Low_complexity 4 68 0 21943 167 30 25 chr13 82410410 82416676 -37328222 + L1PA12 LINE L1 1 7606 0 560 216 30 78 chr13 82416956 82417123 -37327775 + FRAM SINE Alu 1 159 -7 23 0 0 0 chr13 82417275 82417298 -37327600 + AT_rich Low_complexity Low_complexity 1 23 0 2324 251 161 38 chr13 82419351 82420151 -37324747 + L1MDa LINE L1 16 1086 -5454 1484 165 110 0 chr13 82420250 82420504 -37324394 - AluJo SINE Alu -30 282 1 207 0 0 0 chr13 82421523 82421546 -37323352 + (CA)n Simple_repeat Simple_repeat 2 24 0 27 49 0 0 chr13 82421563 82421604 -37323294 + AT_rich Low_complexity Low_complexity 1 41 0 7401 33 5 1 chr13 82423668 82424848 -37320050 + L1PA4 LINE L1 4971 6153 -2 26272 129 15 24 chr13 82425911 82430206 -37314692 - L1PA8A LINE L1 -13 6433 2156 2494 70 0 0 chr13 82430206 82430504 -37314394 + AluY SINE Alu 1 298 -13 26272 129 15 24 chr13 82430504 82432628 -37312270 - L1PA8A LINE L1 -4290 2156 14 23 68 0 0 chr13 82432748 82432792 -37312106 + AT_rich Low_complexity Low_complexity 1 44 0 261 232 0 18 chr13 82433143 82433199 -37311699 + MLT1K LTR MaLR 188 242 -346 33 25 0 0 chr13 82434092 82434132 -37310766 + AT_rich Low_complexity Low_complexity 1 40 0 2800 217 102 57 chr13 82434169 82435081 -37309817 + L1MCb LINE L1 1 953 -5092 442 218 17 99 chr13 82435085 82435384 -37309514 - MLT1G1 LTR MaLR -307 283 3 2333 115 0 0 chr13 82435470 82435782 -37309116 + AluSx SINE Alu 1 312 0 387 267 57 9 chr13 82435886 82435991 -37308907 - L2 LINE L2 -1 3312 3203 375 354 36 10 chr13 82436212 82436404 -37308494 - L3b LINE CR1 -235 1348 1152 1290 202 88 11 chr13 82436658 82436920 -37307978 - AluJo SINE Alu -30 282 1 501 289 7 22 chr13 82437133 82437268 -37307630 - L2 LINE L2 -1 3271 3139 1395 181 15 27 chr13 82437386 82437718 -37307180 - L1MC3 LINE L1 -12 7773 7446 1363 71 40 20 chr13 82437719 82437917 -37306981 - L1PA5 LINE L1 0 6154 5953 7768 55 4 0 chr13 82437917 82438903 -37305995 - L1PA5 LINE L1 -1080 5066 4077 2249 165 35 0 chr13 82438901 82439296 -37305602 - L1MC3 LINE L1 -329 7456 7048 * 237 276 81 11 chr13 82439298 82439385 -37305513 + MIR SINE MIR 43 135 -73 23 0 0 0 chr13 82440650 82440673 -37304225 + AT_rich Low_complexity Low_complexity 1 23 0 2226 119 0 0 chr13 82440967 82441270 -37303628 + AluSg SINE Alu 1 303 -7 2088 135 33 33 chr13 82441879 82442241 -37302657 + THE1B LTR MaLR 1 362 -2 2271 103 0 7 chr13 82442298 82442598 -37302300 + AluSx SINE Alu 1 298 -14 1561 143 5 140 chr13 82443119 82443518 -37301380 + MLT1A1 LTR MaLR 21 365 0 257 263 13 13 chr13 82443889 82443965 -37300933 + MIR3 SINE MIR 121 196 -12 1633 186 39 75 chr13 82444136 82444578 -37300320 - MLT1C LTR MaLR 0 467 42 373 287 46 28 chr13 82444627 82444735 -37300163 + L2 LINE L2 3154 3263 -9 243 169 0 51 chr13 82444930 82444989 -37299909 + CT-rich Low_complexity Low_complexity 4 59 0 269 239 28 0 chr13 82445081 82445152 -37299746 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 180 111 0 0 chr13 82445186 82445213 -37299685 + (TA)n Simple_repeat Simple_repeat 1 27 0 524 282 21 48 chr13 82446929 82447117 -37297781 - MER5A DNA MER1_type -6 183 1 509 281 37 18 chr13 82448139 82448303 -37296595 - L2 LINE L2 -471 2843 2677 437 311 104 45 chr13 82448368 82448757 -37296141 + L2 LINE L2 2632 3038 -234 310 292 97 0 chr13 82448818 82448931 -37295967 + L2 LINE L2 3147 3270 -2 21 57 0 0 chr13 82449211 82449246 -37295652 + AT_rich Low_complexity Low_complexity 1 35 0 195 235 210 0 chr13 82449246 82449327 -37295571 - MIR SINE MIR -52 210 113 4157 118 175 77 chr13 82449334 82450733 -37294165 - pTR5 LTR ERV1 0 2438 743 233 197 66 40 chr13 82450754 82450830 -37294068 - MIR3 SINE MIR -124 84 7 867 188 18 24 chr13 82451356 82451526 -37293372 + MER5B DNA MER1_type 1 169 -9 231 292 11 45 chr13 82451767 82451856 -37293042 - MIR SINE MIR -112 150 65 625 182 35 7 chr13 82451858 82452001 -37292897 + MLT1A1 LTR MaLR 1 147 -218 949 119 7 200 chr13 82452098 82452393 -37292505 - LTR32 LTR ERVL 0 471 234 562 80 0 0 chr13 82452413 82452488 -37292410 - LTR32 LTR ERVL -383 88 14 634 203 6 25 chr13 82452488 82452646 -37292252 + MLT1A1 LTR MaLR 199 353 -12 248 104 0 0 chr13 82452669 82452715 -37292183 - Alu SINE Alu -4 304 265 324 221 105 0 chr13 82453284 82453379 -37291519 - L1MC/D LINE L1 -2101 5707 5603 4715 122 18 16 chr13 82453397 82454165 -37290733 - L1PA16 LINE L1 -9 6157 5388 22 0 0 0 chr13 82454272 82454294 -37290604 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr13 82455286 82455323 -37289575 + AT_rich Low_complexity Low_complexity 1 37 0 182 100 75 0 chr13 82455626 82455666 -37289232 + T-rich Low_complexity Low_complexity 2 44 0 500 275 98 40 chr13 82455728 82456004 -37288894 - L2 LINE L2 -193 3120 2829 532 220 28 23 chr13 82456019 82456186 -37288712 + MLT1E LTR MaLR 19 184 -358 1513 129 49 139 chr13 82456189 82456599 -37288299 - THE1C LTR MaLR 0 375 3 3975 99 38 0 chr13 82456601 82457186 -37287712 - THE1C-int LTR MaLR 0 1580 974 13855 206 22 9 chr13 82457201 82457584 -37287314 - L1PB1 LINE L1 0 6867 6490 675 94 0 0 chr13 82457584 82457680 -37287218 + (TA)n Simple_repeat Simple_repeat 2 97 0 13855 206 22 9 chr13 82457680 82461824 -37283074 - L1PB1 LINE L1 -377 6490 2210 1992 238 28 0 chr13 82461828 82462329 -37282569 - L1PB1 LINE L1 -6343 520 6 610 223 0 0 chr13 82462349 82462470 -37282428 - MLT1A2 LTR MaLR -76 298 178 5812 112 11 74 chr13 82462470 82463520 -37281378 - THE1B-int LTR MaLR -596 984 1 2154 157 22 3 chr13 82463520 82463877 -37281021 - THE1B LTR MaLR 0 364 1 1089 256 49 41 chr13 82463887 82464274 -37280624 + MLT1E LTR MaLR 204 593 0 413 284 362 5 chr13 82464274 82464672 -37280226 - L2 LINE L2 -481 2833 2294 25 0 0 0 chr13 82466291 82466316 -37278582 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr13 82467064 82467101 -37277797 + AT_rich Low_complexity Low_complexity 1 37 0 222 339 0 0 chr13 82467186 82467251 -37277647 + L2 LINE L2 3208 3272 0 564 269 88 114 chr13 82467352 82467842 -37277056 - MLT1K LTR MaLR -98 490 14 321 26 0 0 chr13 82468084 82468122 -37276776 + (TG)n Simple_repeat Simple_repeat 2 39 0 1800 161 23 13 chr13 82468283 82468587 -37276311 + AluJo SINE Alu 1 307 -5 275 154 0 39 chr13 82468656 82468708 -37276190 - L2 LINE L2 0 3272 3223 189 241 19 0 chr13 82468762 82468816 -37276082 - L2 LINE L2 -583 2731 2677 1958 299 40 47 chr13 82468881 82469637 -37275261 - HERV16 LTR ERVL -3814 1182 433 2364 117 80 15 chr13 82469637 82470038 -37274860 + MSTA LTR MaLR 1 427 -1 1958 299 40 47 chr13 82470038 82470188 -37274710 - HERV16 LTR ERVL -4563 433 283 330 246 123 15 chr13 82470410 82470540 -37274358 - LTR16A LTR ERVL -31 419 276 2338 127 16 11 chr13 82471442 82471813 -37273085 - MER93b LTR ERV1 0 373 1 256 243 27 27 chr13 82471814 82471888 -37273010 - MIR SINE MIR -110 152 79 345 313 79 28 chr13 82472241 82472455 -37272443 + L3b LINE CR1 1104 1328 -255 4447 168 32 1 chr13 82473237 82473997 -37270901 + LTR39 LTR ERV1 1 783 0 414 222 144 36 chr13 82473997 82474191 -37270707 - MER5C DNA MER1_type -18 306 92 273 357 32 0 chr13 82474211 82474337 -37270561 + MIR SINE MIR 41 170 -92 352 345 36 15 chr13 82475737 82475956 -37268942 + MIR SINE MIR 35 256 -6 542 194 6 106 chr13 82476438 82476608 -37268290 - MER6B DNA MER2_type -1 209 57 28 0 0 0 chr13 82477014 82477042 -37267856 + AT_rich Low_complexity Low_complexity 1 28 0 2822 136 15 8 chr13 82477190 82477662 -37267236 + L1MB2 LINE L1 5697 6171 0 1651 178 7 20 chr13 82477701 82477999 -37266899 + AluJo SINE Alu 1 294 -18 2121 83 11 0 chr13 82477999 82478091 -37266807 + AluY SINE Alu 33 123 -188 347 0 0 23 chr13 82478091 82478135 -37266763 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2121 83 11 0 chr13 82478135 82478317 -37266581 + AluY SINE Alu 123 311 0 475 296 122 0 chr13 82480452 82480641 -37264257 + MIR SINE MIR 48 259 -3 374 299 201 5 chr13 82481074 82481268 -37263630 - MIR SINE MIR -3 259 28 211 298 0 0 chr13 82481631 82481688 -37263210 + GA-rich Low_complexity Low_complexity 2 58 0 524 288 87 38 chr13 82481746 82481839 -37263059 + HAL1b LINE L1 323 410 -938 2100 125 3 0 chr13 82481839 82482136 -37262762 - AluSq SINE Alu -15 298 1 524 288 87 38 chr13 82482136 82482539 -37262359 + HAL1b LINE L1 410 843 -505 355 277 20 30 chr13 82482595 82482797 -37262101 + L1MC4a LINE L1 4877 5076 -1070 21 0 0 0 chr13 82482876 82482897 -37262001 + AT_rich Low_complexity Low_complexity 1 21 0 6089 232 69 51 chr13 82482979 82485408 -37259490 + L1MC4a LINE L1 5270 7723 -85 899 287 41 58 chr13 82485406 82485905 -37258993 + L1ME3A LINE L1 4983 5450 -720 * 2156 90 7 27 chr13 82485905 82486205 -37258693 + AluSg SINE Alu 1 294 -16 899 287 41 58 chr13 82486205 82486690 -37258208 + L1ME3A LINE L1 5450 5941 -229 24 67 0 0 chr13 82486857 82486902 -37257996 + AT_rich Low_complexity Low_complexity 1 45 0 521 114 13 0 chr13 82489040 82489119 -37255779 + MADE1 DNA Mariner 1 80 0 6348 60 57 0 chr13 82489251 82490637 -37254261 - L1PA7 LINE L1 0 6154 4702 236 234 31 0 chr13 82490651 82490715 -37254183 - L1ME LINE L1 -603 5559 5494 2300 98 7 0 chr13 82490728 82491025 -37253873 - AluSx SINE Alu -12 300 2 904 205 13 46 chr13 82491072 82491311 -37253587 - MLT1B LTR MaLR -159 231 1 378 280 73 55 chr13 82491469 82491687 -37253211 + L1ME LINE L1 5541 5762 -359 300 364 25 0 chr13 82491800 82491921 -37252977 + MIR SINE MIR 63 186 -76 326 156 16 0 chr13 82492199 82492263 -37252635 + (TA)n Simple_repeat Simple_repeat 2 66 0 2476 188 50 13 chr13 82492889 82493426 -37251472 + MER89 LTR ERV1 1 557 -2 261 83 0 0 chr13 82494037 82494073 -37250825 + (TG)n Simple_repeat Simple_repeat 2 37 0 1622 171 39 7 chr13 82494080 82494361 -37250537 - AluJo SINE Alu -22 290 1 500 290 68 75 chr13 82494430 82494885 -37250013 - HsTC2 DNA Tc2 -1446 452 1 411 300 143 22 chr13 82494911 82495184 -37249714 + L2 LINE L2 2396 2701 -613 1596 109 0 0 chr13 82495192 82495403 -37249495 - AluSg/x SINE Alu -4 308 98 492 129 0 0 chr13 82495403 82495468 -37249430 + AluSg SINE Alu 22 86 -224 307 318 159 21 chr13 82495468 82495892 -37249006 + L2 LINE L2 2690 3171 -142 189 0 0 0 chr13 82496065 82496086 -37248812 + (GA)n Simple_repeat Simple_repeat 1 21 0 456 299 66 20 chr13 82496100 82496297 -37248601 + MIR SINE MIR 1 206 -56 384 295 121 14 chr13 82497023 82497230 -37247668 + MLT1J2 LTR MaLR 189 417 -33 270 315 87 31 chr13 82498976 82499103 -37245795 + MIR SINE MIR 11 144 -118 2253 112 26 34 chr13 82499805 82500189 -37244709 - L1PB3 LINE L1 0 6154 5774 270 275 0 12 chr13 82500314 82500394 -37244504 - L1MC5 LINE L1 -77 7884 7806 3206 159 134 5 chr13 82500439 82501104 -37243794 - L1MC3 LINE L1 -11 7774 7024 558 62 0 0 chr13 82501106 82501187 -37243711 - L1MA4A LINE L1 -4 6299 6219 596 186 53 71 chr13 82501191 82501530 -37243368 - L1MC5 LINE L1 -182 7779 7447 193 420 12 0 chr13 82501637 82501718 -37243180 - L2 LINE L2 -3 3269 3188 186 280 280 9 chr13 82501834 82501941 -37242957 - MIR SINE MIR -98 164 29 707 268 66 5 chr13 82501945 82502143 -37242755 - MER58C DNA MER1_type 0 215 6 2103 115 17 0 chr13 82502649 82502937 -37241961 - AluSx SINE Alu -19 293 1 561 312 93 10 chr13 82503154 82503359 -37241539 - MIR SINE MIR -11 251 30 254 305 168 0 chr13 82503406 82503501 -37241397 - L2 LINE L2 0 3272 3162 558 250 171 1 chr13 82504173 82504377 -37240521 + MIR SINE MIR 23 262 0 558 200 0 0 chr13 82504696 82504796 -37240102 - MER5A DNA MER1_type -80 109 10 790 199 26 45 chr13 82506934 82507090 -37237808 - AluJ SINE Alu -29 283 131 832 144 0 43 chr13 82507116 82507138 -37237760 - AluJ SINE Alu -179 133 112 2563 155 24 0 chr13 82507138 82507552 -37237346 + MSTB LTR MaLR 1 424 -2 832 144 0 43 chr13 82507552 82507668 -37237230 - AluJ SINE Alu -200 112 1 21 0 0 0 chr13 82507668 82507689 -37237209 + AT_rich Low_complexity Low_complexity 1 21 0 374 266 0 0 chr13 82507781 82507860 -37237038 - MER5A DNA MER1_type -102 87 9 32 0 0 0 chr13 82508071 82508103 -37236795 + AT_rich Low_complexity Low_complexity 1 32 0 310 210 32 0 chr13 82510044 82510106 -37234792 - L2 LINE L2 -5 3267 3204 945 182 42 0 chr13 82510505 82510697 -37234201 + L1MB7 LINE L1 5955 6154 -30 552 30 0 0 chr13 82511126 82511193 -37233705 - AluY SINE Alu -179 132 66 1366 115 5 10 chr13 82511194 82511394 -37233504 - AluSx SINE Alu -113 199 1 300 342 183 10 chr13 82511661 82511863 -37233035 - MIR SINE MIR -6 256 20 1290 201 37 48 chr13 82512176 82512470 -37232428 + AluJo SINE Alu 1 291 -21 2294 106 45 0 chr13 82514070 82514400 -37230498 + L1PA11 LINE L1 5809 6153 -21 1366 197 0 76 chr13 82515606 82515921 -37228977 - AluJo SINE Alu -21 291 1 1232 254 42 11 chr13 82515932 82516310 -37228588 - L1MB7 LINE L1 -1 6183 5794 285 308 157 12 chr13 82517407 82517579 -37227319 - L2 LINE L2 0 3313 3117 250 296 0 0 chr13 82517690 82517744 -37227154 - MIR SINE MIR -57 151 98 249 361 90 42 chr13 82519324 82519869 -37225029 + L2 LINE L2 2136 2706 -608 1281 180 3 98 chr13 82519883 82520211 -37224687 + AluJo SINE Alu 15 311 -1 383 191 252 17 chr13 82520668 82520783 -37224115 + L2 LINE L2 3172 3313 0 2021 120 38 3 chr13 82521143 82521434 -37223464 + AluSx SINE Alu 1 301 -11 439 254 164 18 chr13 82524096 82524261 -37220637 - L2 LINE L2 -17 3296 3108 365 268 7 52 chr13 82524486 82524639 -37220259 - Charlie4 DNA MER1_type -1 1960 1815 2272 250 51 49 chr13 82525871 82526714 -37218184 - L1MEc LINE L1 -5516 880 36 896 277 119 12 chr13 82530941 82531269 -37213629 + L2 LINE L2 2527 2889 -425 248 381 14 7 chr13 82531294 82531433 -37213465 + L2 LINE L2 2998 3137 -176 1403 231 77 32 chr13 82531437 82531878 -37213020 - MER44D DNA MER2_type 0 605 273 1519 241 95 61 chr13 82532211 82532750 -37212148 - MLT1G1 LTR MaLR -36 559 3 394 240 0 0 chr13 82533161 82533236 -37211662 - MLT1H1 LTR MaLR -282 248 174 326 314 17 0 chr13 82533714 82533832 -37211066 - MLT1H1 LTR MaLR 0 555 436 1163 212 88 26 chr13 82533949 82534289 -37210609 + MLT1A1 LTR MaLR 1 361 -4 583 253 31 41 chr13 82534300 82534503 -37210395 - MLT1H1 LTR MaLR -307 223 34 320 275 37 37 chr13 82535128 82535237 -37209661 - MLT1H1 LTR MaLR -437 118 10 1842 163 27 0 chr13 82535637 82535932 -37208966 - AluSx SINE Alu -9 303 1 2358 53 0 3 chr13 82537213 82537546 -37207352 + AluY SINE Alu 1 332 0 346 363 48 64 chr13 82537717 82538012 -37206886 - L2 LINE L2 -46 3226 2937 306 343 68 38 chr13 82538516 82538781 -37206117 - L2 LINE L2 -431 2883 2611 1313 253 30 0 chr13 82538812 82539109 -37205789 - AluJo SINE Alu -6 306 1 2523 145 40 60 chr13 82539117 82539698 -37205200 - L1MA7 LINE L1 -5 6286 5718 6445 145 45 137 chr13 82539699 82540176 -37204722 - L1MA7 LINE L1 -1474 4672 4153 578 161 147 0 chr13 82540176 82540310 -37204588 + Tigger5 DNA MER2_type 1 92 -2231 308 143 270 0 chr13 82540309 82540372 -37204526 + Tigger5 DNA MER2_type 2244 2323 0 * 6445 145 45 137 chr13 82540372 82541610 -37203288 - L1MA7 LINE L1 -2055 4091 2936 184 434 16 5 chr13 82541612 82541753 -37203145 - L2 LINE L2 -687 2627 2482 1983 165 126 5 chr13 82541753 82542135 -37202763 - MSTA LTR MaLR 0 428 1 184 434 16 5 chr13 82542135 82542182 -37202716 - L2 LINE L2 -832 2482 2437 1156 269 68 23 chr13 82542203 82542600 -37202298 - MLT1J2 LTR MaLR -23 427 13 679 301 126 16 chr13 82543954 82544263 -37200635 - MLT1J2 LTR MaLR -39 411 69 5538 157 21 19 chr13 82544270 82544432 -37200466 - L1MA8 LINE L1 -3 6288 6128 2085 120 3 3 chr13 82544432 82544724 -37200174 + AluSg SINE Alu 1 292 -18 5538 157 21 19 chr13 82544724 82545770 -37199128 - L1MA8 LINE L1 -163 6128 5078 193 311 34 96 chr13 82545902 82546079 -37198819 - L2 LINE L2 -935 2379 2214 635 290 14 36 chr13 82547712 82547988 -37196910 + L1MD2 LINE L1 1474 1743 -4653 3048 271 51 20 chr13 82548188 82549328 -37195570 + L1MD2 LINE L1 3761 4935 -1280 1384 231 102 28 chr13 82549362 82549756 -37195142 + L1MD2 LINE L1 6006 6428 0 437 300 152 17 chr13 82549846 82550083 -37194815 + L1ME3A LINE L1 2205 2473 -3742 253 230 205 12 chr13 82550122 82550283 -37194615 + L1M4 LINE L1 4618 4809 -1337 2574 7 0 0 chr13 82550406 82550684 -37194214 - AluYb8 SINE Alu -2 316 39 742 298 68 34 chr13 82550688 82551158 -37193740 + L1M4 LINE L1 4900 5385 -761 235 274 21 21 chr13 82551254 82551349 -37193549 + MLT1J LTR MaLR 400 494 -17 882 301 93 26 chr13 82551512 82552343 -37192555 + L1ME3A LINE L1 4684 5627 -612 1925 137 7 13 chr13 82552343 82552642 -37192256 + AluSx SINE Alu 1 297 -15 882 301 93 26 chr13 82552642 82552997 -37191901 + L1ME3A LINE L1 5627 5957 -282 1610 219 68 6 chr13 82553523 82553875 -37191023 - MLT1A2 LTR MaLR 0 374 1 597 254 85 13 chr13 82554154 82554390 -37190508 - L1ME2 LINE L1 -10 6088 5836 651 165 74 0 chr13 82554391 82554512 -37190386 + MER44D DNA MER2_type 1 130 -575 242 227 173 13 chr13 82554515 82554590 -37190308 + MER44D DNA MER2_type 517 603 -2 3942 223 98 34 chr13 82554592 82556025 -37188873 - L1ME2 LINE L1 -272 5826 4486 306 73 0 0 chr13 82556025 82556066 -37188832 + (TA)n Simple_repeat Simple_repeat 1 41 0 243 0 0 0 chr13 82556065 82556092 -37188806 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 3942 223 98 34 chr13 82556066 82556895 -37188003 - L1ME2 LINE L1 -1612 4486 3441 525 280 91 50 chr13 82556886 82557204 -37187694 - L1ME2 LINE L1 -5703 367 37 * 536 338 94 0 chr13 82557668 82557902 -37186996 + MIR SINE MIR 3 258 -4 285 226 24 36 chr13 82558016 82558100 -37186798 - MIR SINE MIR -94 168 86 406 219 94 0 chr13 82558508 82558604 -37186294 + MER81 DNA DNA 4 108 -6 286 311 58 10 chr13 82558668 82558771 -37186127 - L3b LINE CR1 -274 1309 1202 381 284 0 0 chr13 82558876 82558978 -37185920 - L3b LINE CR1 -379 1204 1103 37 0 0 0 chr13 82560125 82560162 -37184736 + AT_rich Low_complexity Low_complexity 1 37 0 436 186 81 32 chr13 82560730 82560854 -37184044 - L1ME1 LINE L1 -1 6165 6036 494 303 87 18 chr13 82561029 82561247 -37183651 - MIR SINE MIR -15 247 15 755 271 128 18 chr13 82561393 82561721 -37183177 - L2 LINE L2 -8 3305 2942 * 884 243 18 0 chr13 82561702 82561920 -37182978 - L2 LINE L2 -657 2657 2436 581 224 9 0 chr13 82561922 82562029 -37182869 + MER58 DNA MER1_type 3 110 -105 716 341 77 20 chr13 82562105 82562457 -37182441 - L2 LINE L2 -880 2434 2063 1602 64 0 5 chr13 82563027 82563229 -37181669 - AluY SINE Alu -5 306 106 267 174 22 0 chr13 82563525 82563571 -37181327 + MIR3 SINE MIR 146 192 -16 4723 142 75 34 chr13 82563812 82563993 -37180905 + L1MA7 LINE L1 5137 5309 -982 2403 77 3 3 chr13 82563993 82564303 -37180595 + AluSp SINE Alu 1 310 -3 4723 142 75 34 chr13 82564303 82565223 -37179675 + L1MA7 LINE L1 5309 6287 -4 1912 118 82 28 chr13 82565414 82565770 -37179128 - THE1C LTR MaLR 0 375 1 376 289 0 0 chr13 82566306 82566396 -37178502 - MIR SINE MIR 0 262 173 884 333 90 19 chr13 82566584 82567016 -37177882 - L3 LINE CR1 -870 707 245 428 254 178 99 chr13 82567332 82567805 -37177093 - LTR67 LTR ERVL -2 555 46 299 360 60 13 chr13 82567926 82568076 -37176822 - MIR SINE MIR -95 167 11 2371 136 34 3 chr13 82568141 82568523 -37176375 - L1PA15 LINE L1 -4 6161 5768 4847 115 26 5 chr13 82568523 82569264 -37175634 - L1PA15 LINE L1 -13 6152 5397 968 112 0 15 chr13 82569264 82569398 -37175500 - AluSq SINE Alu -148 165 34 316 247 11 0 chr13 82569540 82569629 -37175269 - L1MEd LINE L1 -5986 133 44 23 33 0 0 chr13 82569968 82569998 -37174900 + AT_rich Low_complexity Low_complexity 1 30 0 1642 221 29 55 chr13 82569998 82570509 -37174389 - L1ME1 LINE L1 -5 6161 5664 789 254 72 81 chr13 82570528 82570585 -37174313 - L2 LINE L2 -815 2499 2443 1734 178 35 12 chr13 82570585 82570923 -37173975 - MER7A DNA MER2_type 0 346 3 789 254 72 81 chr13 82570923 82571159 -37173739 - L2 LINE L2 -871 2443 2207 2174 177 86 23 chr13 82571159 82571634 -37173264 + MLT1D LTR MaLR 1 505 0 789 254 72 81 chr13 82571634 82571674 -37173224 - L2 LINE L2 -1107 2207 2168 230 292 42 28 chr13 82572462 82572534 -37172364 - MIR SINE MIR -188 74 2 29 0 0 0 chr13 82575534 82575563 -37169335 + AT_rich Low_complexity Low_complexity 1 29 0 1563 118 26 9 chr13 82576391 82576620 -37168278 + THE1B LTR MaLR 1 233 -131 22 56 0 0 chr13 82576857 82576893 -37168005 + AT_rich Low_complexity Low_complexity 1 36 0 7284 175 21 62 chr13 82577344 82577663 -37167235 - L1P5 LINE L1 -527 5629 5298 2036 118 7 0 chr13 82577663 82577934 -37166964 - AluSg SINE Alu -24 286 14 7284 175 21 62 chr13 82577934 82579758 -37165140 - L1P5 LINE L1 -858 5298 3555 * 17439 218 30 19 chr13 82579750 82581073 -37163825 - L1PA15 LINE L1 -36 7567 6260 189 0 0 0 chr13 82581073 82581094 -37163804 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 17439 218 30 19 chr13 82581094 82583832 -37161066 - L1PA15 LINE L1 -1343 6260 3554 2067 108 42 0 chr13 82583832 82584119 -37160779 - AluSp SINE Alu -9 304 6 17439 218 30 19 chr13 82584119 82587551 -37157347 - L1PA15 LINE L1 -4049 3554 7 3408 233 29 50 chr13 82587557 82588805 -37156093 - L1PA15-16 LINE L1 -2877 3972 2750 2202 119 0 0 chr13 82588812 82589106 -37155792 - AluSx SINE Alu -18 294 1 624 231 0 0 chr13 82589359 82589493 -37155405 - L1M2 LINE L1 -4180 2669 2536 390 335 56 15 chr13 82590123 82590320 -37154578 + MIR SINE MIR 41 245 -17 747 202 66 50 chr13 82592059 82592257 -37152641 + MER3 DNA MER1_type 3 203 -6 976 198 75 73 chr13 82593442 82593906 -37150992 + LTR37B LTR ERV1 4 468 0 387 0 0 0 chr13 82595041 82595084 -37149814 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr13 82595731 82595753 -37149145 + AT_rich Low_complexity Low_complexity 1 22 0 269 236 79 63 chr13 82596006 82596133 -37148765 + L1MC5 LINE L1 7719 7847 -114 2358 284 183 20 chr13 82596234 82597588 -37147310 - L2 LINE L2 0 3313 1760 1145 270 79 23 chr13 82597614 82598084 -37146814 - LTR33 LTR ERVL -25 496 1 447 262 92 66 chr13 82598212 82598364 -37146534 + L1ME4a LINE L1 5720 5867 -254 833 142 0 8 chr13 82598364 82598498 -37146400 + FLAM_C SINE Alu 1 133 0 447 262 92 66 chr13 82598498 82598662 -37146236 + L1ME4a LINE L1 5867 6044 -77 195 305 92 28 chr13 82599153 82599294 -37145604 - L2 LINE L2 -15 3298 3149 772 205 83 24 chr13 82599831 82600036 -37144862 - MIR SINE MIR -13 249 33 277 335 0 58 chr13 82601486 82601677 -37143221 + CT-rich Low_complexity Low_complexity 1 180 0 2410 140 33 23 chr13 82601908 82602336 -37142562 + MSTB1 LTR MaLR 1 432 0 201 336 74 41 chr13 82602459 82602581 -37142317 - L2 LINE L2 -10 3262 3137 715 250 30 15 chr13 82602615 82602815 -37142083 - MIR SINE MIR -8 254 52 204 319 60 35 chr13 82602906 82603022 -37141876 - MIR3 SINE MIR -1 207 89 249 320 104 0 chr13 82606167 82606292 -37138606 - L2 LINE L2 -18 3254 3117 7927 101 3 0 chr13 82606352 82607475 -37137423 - THE1B-int LTR MaLR -454 1126 1 2113 137 39 20 chr13 82607475 82607832 -37137066 - THE1B LTR MaLR 0 364 1 180 182 0 0 chr13 82608026 82608070 -37136828 + GA-rich Low_complexity Low_complexity 1 44 0 355 194 10 10 chr13 82608408 82608506 -37136392 - MER33 DNA MER1_type 0 363 266 13137 143 26 40 chr13 82608515 82611011 -37133887 - L1MA3 LINE L1 -6 7718 5190 2427 63 0 10 chr13 82611011 82611312 -37133586 - AluY SINE Alu -13 298 1 13137 143 26 40 chr13 82611312 82614297 -37130601 - L1MA3 LINE L1 -2534 5190 2322 2196 109 3 0 chr13 82614317 82614636 -37130262 - AluSq SINE Alu 0 320 1 825 217 17 22 chr13 82614636 82614866 -37130032 - MER33 DNA MER1_type -89 235 7 23 33 0 0 chr13 82615902 82615932 -37128966 + AT_rich Low_complexity Low_complexity 1 30 0 242 281 198 0 chr13 82617001 82617097 -37127801 - MIR SINE MIR -64 144 30 381 284 162 0 chr13 82617241 82617389 -37127509 - MIR SINE MIR -1 261 90 193 317 92 25 chr13 82617456 82617576 -37127322 - L2 LINE L2 -18 3295 3168 24 96 0 0 chr13 82617681 82617754 -37127144 + AT_rich Low_complexity Low_complexity 1 73 0 232 233 56 22 chr13 82618807 82618897 -37126001 + L3 LINE CR1 815 907 -670 448 257 7 64 chr13 82619077 82619217 -37125681 - MIR SINE MIR -74 188 57 38 39 0 0 chr13 82620229 82620281 -37124617 + AT_rich Low_complexity Low_complexity 1 52 0 557 165 47 0 chr13 82620838 82620965 -37123933 - L1MA7 LINE L1 -1 6290 6158 507 301 78 67 chr13 82622461 82622730 -37122168 - L2 LINE L2 -4 3268 2997 356 326 37 30 chr13 82622768 82622903 -37121995 + L2 LINE L2 3136 3271 -1 298 193 36 21 chr13 82623323 82623463 -37121435 + CT-rich Low_complexity Low_complexity 2 143 0 23 0 0 0 chr13 82623738 82623761 -37121137 + AT_rich Low_complexity Low_complexity 1 23 0 252 122 0 0 chr13 82625044 82625085 -37119813 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 71 0 0 chr13 82625249 82625277 -37119621 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1134 166 22 0 chr13 82625597 82625820 -37119078 + L1MB5 LINE L1 5939 6166 -8 315 346 24 24 chr13 82626629 82626756 -37118142 + MIR SINE MIR 27 153 -55 2122 189 29 81 chr13 82627900 82628295 -37116603 - MLT2B3 LTR ERVL -2 552 195 4553 117 48 28 chr13 82628295 82629058 -37115840 + MER4E LTR ERV1 1 779 0 2122 189 29 81 chr13 82629058 82629243 -37115655 - MLT2B3 LTR ERVL -359 195 2 4259 127 15 28 chr13 82629251 82629528 -37115370 - HERVL-B3 LTR ERVL -3 5651 5372 2293 98 0 22 chr13 82629528 82629843 -37115055 - AluSg SINE Alu -2 308 1 4259 127 15 28 chr13 82629843 82630290 -37114608 - HERVL-B3 LTR ERVL -282 5372 4936 27 0 0 0 chr13 82630290 82630317 -37114581 + AT_rich Low_complexity Low_complexity 1 27 0 562 120 94 0 chr13 82630340 82630457 -37114441 + MER63 DNA MER1_type 902 1029 -31 596 101 0 20 chr13 82630583 82630682 -37114216 - LTR7 LTR ERV1 -2 448 352 2902 68 0 0 chr13 82630822 82631192 -37113706 - L1PA6 LINE L1 -2 6152 5783 2001 36 0 0 chr13 82631192 82631439 -37113459 + L1PA6 LINE L1 5551 5797 -357 6243 134 16 2 chr13 82631442 82632416 -37112482 - HERVL-B3 LTR ERVL -719 4935 3948 542 296 31 0 chr13 82632416 82632578 -37112320 - MLT2B3 LTR ERVL -387 167 1 589 337 58 10 chr13 82633807 82634098 -37110800 - L2 LINE L2 -442 2872 2568 248 352 95 0 chr13 82634110 82634215 -37110683 + L2 LINE L2 3157 3271 -1 540 280 42 77 chr13 82634421 82634536 -37110362 + MIR SINE MIR 11 128 -134 1626 188 12 49 chr13 82634536 82634860 -37110038 - AluJb SINE Alu 0 312 1 540 280 42 77 chr13 82634860 82635005 -37109893 + MIR SINE MIR 128 262 0 2301 95 0 3 chr13 82635954 82636250 -37108648 - AluSg SINE Alu -15 295 1 2417 74 3 0 chr13 82636410 82636707 -37108191 - AluSc SINE Alu -11 298 1 216 318 15 15 chr13 82636908 82636974 -37107924 - L3b LINE CR1 -1 1582 1517 * 1168 351 110 21 chr13 82636949 82637840 -37107058 - L3 LINE CR1 -59 1518 549 674 280 70 45 chr13 82637936 82638179 -37106719 - MIR SINE MIR -1 261 13 312 320 85 62 chr13 82638183 82638442 -37106456 - L3 LINE CR1 -1114 463 199 2102 124 37 0 chr13 82639971 82640093 -37104805 + AluSq SINE Alu 1 117 -196 248 0 0 30 chr13 82640093 82640126 -37104772 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2102 124 37 0 chr13 82640126 82640302 -37104596 + AluSq SINE Alu 117 310 -3 361 329 151 7 chr13 82641485 82641777 -37103121 + L2 LINE L2 2320 2653 -661 546 117 0 0 chr13 82642505 82642582 -37102316 - AluSg/x SINE Alu -17 295 219 19613 33 0 1 chr13 82643131 82646276 -37098622 - L1PA3 LINE L1 -5 6150 3007 190 333 15 0 chr13 82647212 82647278 -37097620 - MIR SINE MIR 0 262 196 470 263 11 0 chr13 82647281 82647456 -37097442 + (TATG)n Simple_repeat Simple_repeat 2 178 0 742 268 33 11 chr13 82647485 82647668 -37097230 - MIR SINE MIR -58 204 18 23 0 0 0 chr13 82648295 82648318 -37096580 + AT_rich Low_complexity Low_complexity 1 23 0 180 135 0 0 chr13 82649630 82649667 -37095231 + (CATG)n Simple_repeat Simple_repeat 3 39 0 204 67 0 0 chr13 82650805 82650835 -37094063 + (TA)n Simple_repeat Simple_repeat 1 30 0 36 23 0 0 chr13 82652624 82652667 -37092231 + AT_rich Low_complexity Low_complexity 1 43 0 799 164 0 8 chr13 82652721 82652849 -37092049 - FLAM_C SINE Alu -5 128 2 383 285 20 95 chr13 82653022 82653075 -37091823 - MIR SINE MIR -4 258 203 1562 198 3 21 chr13 82653075 82653363 -37091535 - AluJo SINE Alu -16 296 14 383 285 20 95 chr13 82653363 82653509 -37091389 - MIR SINE MIR -59 203 74 328 296 47 47 chr13 82655229 82655398 -37089500 + MIR3 SINE MIR 16 184 -24 521 196 9 18 chr13 82656792 82656904 -37087994 - MER94 DNA DNA -22 112 2 319 198 23 81 chr13 82658243 82658329 -37086569 + MIR SINE MIR 12 92 -170 1548 245 91 35 chr13 82658332 82658850 -37086048 - MLT1H LTR MaLR -2 547 1 590 173 0 24 chr13 82658877 82659004 -37085894 - L1MA9 LINE L1 0 6312 6189 479 244 8 23 chr13 82659106 82659237 -37085661 - LTR52 LTR ERVL -292 129 1 580 270 112 53 chr13 82659240 82659863 -37085035 - HAL1 LINE L1 -875 1632 973 345 287 101 78 chr13 82659880 82660138 -37084760 - MLT1J LTR MaLR -18 493 230 2128 107 7 3 chr13 82660156 82660454 -37084444 - AluSc SINE Alu -10 299 1 305 263 14 13 chr13 82660495 82660589 -37084309 - MLT1J LTR MaLR -299 268 134 28 29 0 0 chr13 82661845 82661880 -37083018 + AT_rich Low_complexity Low_complexity 1 35 0 2737 147 7 7 chr13 82662131 82662567 -37082331 - Tigger2 DNA MER2_type -3 2715 2280 281 105 0 0 chr13 82662577 82662615 -37082283 + MER8 DNA MER2_type 199 236 -3 1778 152 35 69 chr13 82662649 82663024 -37081874 - MLT1B LTR MaLR 0 390 29 494 303 87 18 chr13 82663298 82663516 -37081382 + MIR SINE MIR 15 247 -15 436 186 81 32 chr13 82663691 82663815 -37081083 + L1ME1 LINE L1 6036 6165 -1 37 0 0 0 chr13 82664383 82664420 -37080478 + AT_rich Low_complexity Low_complexity 1 37 0 381 284 0 0 chr13 82665567 82665669 -37079229 + L3b LINE CR1 1103 1204 -379 286 311 58 10 chr13 82665774 82665877 -37079021 + L3b LINE CR1 1202 1309 -274 406 219 94 0 chr13 82665941 82666037 -37078861 - MER81 DNA DNA -6 108 4 285 226 24 36 chr13 82666445 82666529 -37078369 + MIR SINE MIR 86 168 -94 536 338 94 0 chr13 82666643 82666877 -37078021 - MIR SINE MIR -4 258 3 550 283 78 50 chr13 82667341 82667663 -37077235 + L1ME2 LINE L1 37 367 -5703 * 3941 223 97 34 chr13 82667654 82668457 -37076441 + L1ME2 LINE L1 3441 4192 -1906 207 0 0 0 chr13 82668457 82668480 -37076418 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 273 98 0 0 chr13 82668479 82668520 -37076378 + (TA)n Simple_repeat Simple_repeat 2 42 0 3941 223 97 34 chr13 82668480 82669955 -37074943 + L1ME2 LINE L1 4192 5826 -272 242 227 173 13 chr13 82669957 82670032 -37074866 - MER44D DNA MER2_type -2 603 517 651 165 74 0 chr13 82670035 82670156 -37074742 - MER44D DNA MER2_type -575 130 1 597 254 85 13 chr13 82670157 82670393 -37074505 + L1ME2 LINE L1 5836 6088 -10 1610 219 68 6 chr13 82670672 82671024 -37073874 + MLT1A2 LTR MaLR 1 374 0 882 300 97 26 chr13 82671550 82671905 -37072993 - L1ME3A LINE L1 -282 5888 5560 1925 137 7 13 chr13 82671905 82672204 -37072694 - AluSx SINE Alu -15 297 1 882 300 97 26 chr13 82672204 82673035 -37071863 - L1ME3A LINE L1 -610 5560 4615 235 274 21 21 chr13 82673198 82673293 -37071605 - MLT1J LTR MaLR -17 494 400 742 298 68 34 chr13 82673389 82673859 -37071039 - L1M4 LINE L1 -761 5385 4900 2561 4 0 0 chr13 82673863 82674138 -37070760 + AluYb8 SINE Alu 39 313 -5 716 341 77 20 chr13 82674709 82675061 -37069837 + L2 LINE L2 2063 2434 -880 581 224 9 0 chr13 82675137 82675244 -37069654 - MER58 DNA MER1_type -105 110 3 884 243 18 0 chr13 82675246 82675464 -37069434 + L2 LINE L2 2436 2657 -657 438 289 95 19 chr13 82675445 82675656 -37069242 + L2 LINE L2 2942 3168 -145 * 30 27 0 0 chr13 82677262 82677299 -37067599 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr13 82678296 82678316 -37066582 + (CA)n Simple_repeat Simple_repeat 2 21 0 414 279 8 54 chr13 82678494 82678623 -37066275 + L2 LINE L2 3191 3313 0 538 83 67 0 chr13 82681240 82681360 -37063538 + (TA)n Simple_repeat Simple_repeat 2 129 0 207 189 0 0 chr13 82681428 82681465 -37063433 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 186 235 0 0 chr13 82681771 82681805 -37063093 + MIR SINE MIR 217 250 -12 22 35 0 0 chr13 82683840 82683869 -37061029 + AT_rich Low_complexity Low_complexity 1 29 0 779 247 58 31 chr13 82684683 82684906 -37059992 + MIR SINE MIR 24 252 -10 333 0 0 0 chr13 82685073 82685110 -37059788 + (CA)n Simple_repeat Simple_repeat 2 38 0 215 268 72 10 chr13 82686299 82686396 -37058502 - MIR SINE MIR -31 231 129 5634 159 43 8 chr13 82686704 82688709 -37056189 - L1MA8 LINE L1 -4 7247 5177 6314 214 14 2 chr13 82688712 82689886 -37055012 + L1PA12 LINE L1 103 1291 -6290 * 6769 230 122 21 chr13 82689885 82690962 -37053936 - L1MA8 LINE L1 -4319 2788 1821 243 0 0 0 chr13 82690962 82690989 -37053909 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 6769 230 122 21 chr13 82690989 82692446 -37052452 - L1MA8 LINE L1 -5286 1821 1 398 41 0 0 chr13 82692517 82692566 -37052332 + L1MA9 LINE L1 6022 6070 -242 11296 58 0 5 chr13 82692667 82694091 -37050807 - L1P LINE L1 -4721 1425 9 292 248 43 17 chr13 82694661 82694778 -37050120 + ERVL LTR ERVL 3879 3998 -1766 426 354 141 8 chr13 82694904 82695266 -37049632 + ERVL LTR ERVL 4038 4447 -1207 447 232 107 71 chr13 82695269 82695498 -37049400 + MLT1J LTR MaLR 139 449 -166 4622 75 0 11 chr13 82696788 82697401 -37047497 - L1PA8A LINE L1 -1 6130 5525 242 202 36 71 chr13 82699821 82699905 -37044993 - MLT1I LTR MaLR -6 403 323 262 234 0 47 chr13 82700397 82700504 -37044394 + (TA)n Simple_repeat Simple_repeat 2 103 0 201 39 0 0 chr13 82700633 82700659 -37044239 + (TG)n Simple_repeat Simple_repeat 1 26 0 31 104 0 0 chr13 82700668 82700783 -37044115 + AT_rich Low_complexity Low_complexity 1 115 0 453 116 58 0 chr13 82700882 82700968 -37043930 - L1MA8 LINE L1 0 6291 6201 249 83 0 0 chr13 82702316 82702352 -37042546 + (TG)n Simple_repeat Simple_repeat 1 36 0 992 338 20 7 chr13 82702764 82703167 -37041731 - LTR16A LTR ERVL -27 423 16 1599 341 62 36 chr13 82703561 82704804 -37040094 - HERV16 LTR ERVL -619 5145 3935 306 0 0 0 chr13 82704804 82704838 -37040060 + (TTA)n Simple_repeat Simple_repeat 3 36 0 8913 46 0 2 chr13 82704838 82706625 -37038273 - L1PA5 LINE L1 -18 6136 4351 1599 341 62 36 chr13 82706625 82706710 -37038188 - HERV16 LTR ERVL -1828 3936 3782 1790 259 61 66 chr13 82706741 82707481 -37037417 - HERV16 LTR ERVL -2671 2325 1590 797 262 13 34 chr13 82707800 82708037 -37036861 - HERV16 LTR ERVL -3851 1145 914 1413 322 20 52 chr13 82708148 82708896 -37036002 - HERV16 LTR ERVL -4260 736 13 589 282 35 0 chr13 82708908 82709082 -37035816 - LTR16A LTR ERVL -15 435 256 770 221 142 0 chr13 82709105 82709309 -37035589 + L1MB8 LINE L1 2534 2766 -3380 4443 181 22 5 chr13 82709321 82710194 -37034704 + L1PA14 LINE L1 3897 4784 -1362 2430 94 8 48 chr13 82710174 82710546 -37034352 + L1PA14 LINE L1 5428 5784 -377 * 45757 34 0 2 chr13 82710541 82716704 -37028194 + L1PA3 LINE L1 3 6152 -3 2617 86 27 69 chr13 82716726 82717132 -37027766 + L1PA14 LINE L1 5770 6158 -3 8637 215 33 47 chr13 82717134 82720255 -37024643 + L1MB8 LINE L1 2752 5817 -361 2425 84 0 3 chr13 82720255 82720563 -37024335 + AluSg SINE Alu 1 307 -3 8637 215 33 47 chr13 82720563 82720915 -37023983 + L1MB8 LINE L1 5817 6173 -5 356 242 167 0 chr13 82721472 82721592 -37023306 - L2 LINE L2 -230 3083 2944 448 286 43 12 chr13 82723932 82724093 -37020805 + MIR SINE MIR 4 169 -93 2765 116 27 27 chr13 82724107 82724145 -37020753 - L1PB4 LINE L1 -1 6155 6118 2140 133 0 16 chr13 82724145 82724461 -37020437 - AluSx SINE Alu -1 311 1 2765 116 27 27 chr13 82724461 82724862 -37020036 - L1PB4 LINE L1 -37 6119 5716 6832 191 25 38 chr13 82724863 82726313 -37018585 - MER52A LTR ERV1 -4 1751 368 402 214 41 0 chr13 82726320 82726418 -37018480 - MER52A LTR ERV1 -1653 102 1 671 159 38 30 chr13 82726419 82726551 -37018347 - L1PB4 LINE L1 -435 5721 5589 2066 122 0 7 chr13 82727054 82727348 -37017550 + AluSc SINE Alu 1 292 -17 308 79 0 0 chr13 82828612 82828650 -36916248 + U2 snRNA snRNA 1 38 -150 342 294 34 40 chr13 82829450 82829627 -36915271 + MLT1J LTR MaLR 236 411 -100 208 263 18 0 chr13 82829811 82829868 -36915030 + MIR SINE MIR 183 240 -22 2414 126 8 25 chr13 82829981 82830378 -36914520 - L1MA8 LINE L1 -281 6010 5621 244 171 24 0 chr13 82830662 82830744 -36914154 + (TA)n Simple_repeat Simple_repeat 2 85 0 308 125 16 0 chr13 82830776 82830840 -36914058 + T-rich Low_complexity Low_complexity 4 68 0 231 275 14 0 chr13 82832553 82832622 -36912276 + MIR3 SINE MIR 126 195 -13 2141 108 3 10 chr13 82832958 82833263 -36911635 + AluSp SINE Alu 1 303 -10 193 324 0 15 chr13 82833577 82833645 -36911253 - L2 LINE L2 0 3272 3206 880 198 19 33 chr13 82833652 82833864 -36911034 - MER3 DNA MER1_type 0 209 1 1569 186 20 93 chr13 82834098 82834495 -36910403 - MLT1A2 LTR MaLR 0 374 7 228 360 80 19 chr13 82834545 82834809 -36910089 - L2 LINE L2 -402 2912 2633 606 205 159 7 chr13 82835223 82835374 -36909524 - MER63A DNA MER1_type 0 210 37 2040 115 0 56 chr13 82835447 82835768 -36909130 + AluSx SINE Alu 1 303 -9 347 298 161 18 chr13 82836245 82836463 -36908435 - MIR SINE MIR -12 250 2 391 280 70 45 chr13 82837657 82837845 -36907053 - MIR SINE MIR -42 220 30 24 111 0 0 chr13 82838340 82838448 -36906450 + AT_rich Low_complexity Low_complexity 1 108 0 616 284 157 23 chr13 82838978 82839366 -36905532 + L3 LINE CR1 423 862 -715 360 64 0 0 chr13 82840668 82840715 -36904183 + (TG)n Simple_repeat Simple_repeat 1 47 0 329 267 58 2 chr13 82840985 82841120 -36903778 - MIR SINE MIR -55 153 33 207 69 0 0 chr13 82842071 82842100 -36902798 + (CAT)n Simple_repeat Simple_repeat 2 30 0 391 165 0 143 chr13 82843728 82843861 -36901037 - Charlie7 DNA MER1_type -2 2610 2497 24140 166 28 33 chr13 82846614 82852622 -36892276 - L1PA10 LINE L1 -312 6171 52 4041 185 33 43 chr13 82852845 82853752 -36891146 + L1MB3 LINE L1 5062 5977 -206 2136 111 0 26 chr13 82853752 82854058 -36890840 + AluSc SINE Alu 1 298 -11 4041 185 33 43 chr13 82854058 82854230 -36890668 + L1MB3 LINE L1 5977 6128 -55 2406 90 0 0 chr13 82854230 82854530 -36890368 + AluSq SINE Alu 1 300 -13 4041 185 33 43 chr13 82854530 82854580 -36890318 + L1MB3 LINE L1 6128 6177 -6 3406 201 88 59 chr13 82854634 82855030 -36889868 + L1MC3 LINE L1 6705 7088 -697 226 209 0 0 chr13 82855030 82855073 -36889825 + MLT1F1 LTR MaLR 35 77 -490 3406 201 88 59 chr13 82855073 82855685 -36889213 + L1MC3 LINE L1 7088 7785 0 328 311 30 30 chr13 82856046 82856213 -36888685 + L1ME LINE L1 4256 4422 -1724 252 260 31 16 chr13 82856223 82856350 -36888548 + L1ME LINE L1 5754 5882 -239 379 332 119 5 chr13 82856641 82856843 -36888055 - L2 LINE L2 -972 2342 2118 411 270 0 0 chr13 82856967 82857067 -36887831 + L1ME LINE L1 5500 5599 -565 233 213 0 0 chr13 82857217 82857264 -36887634 + GA-rich Low_complexity Low_complexity 3 49 0 269 204 0 19 chr13 82859966 82860020 -36884878 + FLAM SINE Alu 68 120 -13 21 0 0 0 chr13 82860082 82860103 -36884795 + AT_rich Low_complexity Low_complexity 1 21 0 2178 105 3 0 chr13 82860296 82860590 -36884308 - AluSq SINE Alu -1 312 18 2860 65 35 5 chr13 82860661 82861059 -36883839 + L1PA8 LINE L1 5763 6172 0 474 286 40 29 chr13 82863657 82863832 -36881066 - MIR SINE MIR -79 183 7 276 30 0 0 chr13 82865851 82865884 -36879014 + (CA)n Simple_repeat Simple_repeat 2 34 0 248 300 130 10 chr13 82866995 82867118 -36877780 + MIR SINE MIR 13 148 -60 255 310 0 0 chr13 82867127 82867198 -36877700 - L2 LINE L2 -1 3271 3201 1698 168 35 15 chr13 82867294 82867634 -36877264 - MER7A DNA MER2_type 0 346 2 207 268 54 0 chr13 82868897 82868953 -36875945 - MIR SINE MIR -99 163 105 232 239 30 30 chr13 82868962 82869029 -36875869 + MIR SINE MIR 126 192 -70 285 378 119 8 chr13 82869568 82869807 -36875091 + L2 LINE L2 2750 3012 -260 327 287 77 11 chr13 82870311 82870492 -36874406 + L1ME LINE L1 5350 5542 -2266 415 277 62 6 chr13 82870729 82870906 -36873992 + L1ME LINE L1 5546 5732 -438 285 259 54 20 chr13 82870980 82871127 -36873771 - L1MEd LINE L1 -3344 2785 2634 626 275 73 101 chr13 82871357 82871544 -36873354 - L1MEd LINE L1 -5404 715 524 2091 120 24 0 chr13 82871544 82871836 -36873062 + AluSx SINE Alu 1 299 -13 626 275 73 101 chr13 82871836 82872102 -36872796 - L1MEd LINE L1 -5595 524 275 197 328 30 0 chr13 82872292 82872359 -36872539 + MIR SINE MIR 157 225 -37 4039 178 10 29 chr13 82873055 82873225 -36871673 - L1MB8 LINE L1 -6 6172 6000 848 178 97 144 chr13 82873225 82873608 -36871290 + MLT1A1 LTR MaLR 1 365 0 4039 178 10 29 chr13 82873608 82874315 -36870583 - L1MB8 LINE L1 -178 6000 5311 22 70 0 0 chr13 82874315 82874358 -36870540 + AT_rich Low_complexity Low_complexity 1 43 0 313 274 66 33 chr13 82875339 82875580 -36869318 + L1MC3 LINE L1 5676 5924 -1884 361 237 10 10 chr13 82877063 82877160 -36867738 + L1MC3 LINE L1 7184 7280 -505 32021 79 6 6 chr13 82877163 82882574 -36862324 + L1PA6 LINE L1 751 6152 -2 1509 162 22 4 chr13 82882584 82882862 -36862036 + Tigger2 DNA MER2_type 2435 2717 -1 831 176 55 77 chr13 82882862 82883135 -36861763 + L1MC3 LINE L1 7519 7785 0 321 26 0 0 chr13 82883472 82883510 -36861388 + (TG)n Simple_repeat Simple_repeat 2 39 0 1065 85 0 0 chr13 82883692 82883833 -36861065 + L1PA7 LINE L1 1 141 -6320 28286 115 13 63 chr13 82883927 82885658 -36859240 + L1PA7 LINE L1 327 2143 -4326 2123 128 0 28 chr13 82885658 82885977 -36858921 + AluSg SINE Alu 1 310 0 28286 115 13 63 chr13 82885977 82890724 -36854174 + L1PA7 LINE L1 2143 6469 0 2814 13 0 0 chr13 82890726 82891036 -36853862 + AluYa5 SINE Alu 1 310 -1 2555 52 0 10 chr13 82891085 82891393 -36853505 + AluY SINE Alu 1 305 -6 464 262 110 7 chr13 82893008 82893153 -36851745 + MIR SINE MIR 2 161 -101 1231 176 35 44 chr13 82893186 82893457 -36851441 + LTR45B LTR ERV1 3 321 -168 3372 79 22 5 chr13 82893457 82893902 -36850996 + MLT2A2 LTR ERVL 1 453 0 1231 176 35 44 chr13 82893902 82893939 -36850959 + LTR45B LTR ERV1 321 357 -132 1117 180 0 24 chr13 82894531 82894737 -36850161 - AluJo SINE Alu -16 296 96 4393 149 28 5 chr13 82894752 82895564 -36849334 - L1PB4 LINE L1 -11 6145 5315 5243 77 33 0 chr13 82895567 82896331 -36848567 - L1PA12 LINE L1 -7 6161 5373 1945 150 36 14 chr13 82896370 82896731 -36848167 - THE1C LTR MaLR 0 375 7 5387 242 69 28 chr13 82896736 82899927 -36844971 - L1PBb LINE L1 -2337 4511 1040 337 352 88 58 chr13 82900502 82901036 -36843862 - L1PBb LINE L1 -6295 554 5 31348 97 11 57 chr13 82901046 82907492 -36837406 + L1PA6 LINE L1 11 6153 -1 9566 212 37 9 chr13 82907611 82911216 -36833682 - L1MC1 LINE L1 -5 6608 2899 2971 162 35 40 chr13 82911230 82912033 -36832865 - L1MC1 LINE L1 -3991 2435 1543 * 5802 195 43 14 chr13 82912030 82913295 -36831603 - L1MC1 LINE L1 -5105 1321 20 265 330 55 64 chr13 82914102 82914338 -36830560 + L2 LINE L2 2952 3185 -87 460 318 195 34 chr13 82915314 82916655 -36828243 + L2 LINE L2 616 2172 -1142 1296 199 37 15 chr13 82916656 82917108 -36827790 + MLT1D LTR MaLR 1 505 0 332 301 106 64 chr13 82917176 82917583 -36827315 - MLT1J1 LTR MaLR -5 441 18 785 348 103 31 chr13 82917590 82918549 -36826349 + L2 LINE L2 2227 3271 -1 21 36 0 0 chr13 82918661 82918689 -36826209 + AT_rich Low_complexity Low_complexity 1 28 0 270 95 0 0 chr13 82918881 82918923 -36825975 + (TG)n Simple_repeat Simple_repeat 1 42 0 1412 163 35 123 chr13 82918924 82919324 -36825574 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr13 82919703 82919727 -36825171 + AT_rich Low_complexity Low_complexity 1 24 0 637 296 48 5 chr13 82920826 82921015 -36823883 - MIR SINE MIR 0 262 66 406 304 51 36 chr13 82921095 82921371 -36823527 - L2 LINE L2 -170 3102 2823 249 349 6 57 chr13 82921718 82921785 -36823113 - L2 LINE L2 -666 2648 2579 884 214 31 58 chr13 82921785 82922009 -36822889 + MER20 DNA MER1_type 2 219 0 249 349 6 57 chr13 82922009 82922116 -36822782 - L2 LINE L2 -735 2579 2483 261 321 82 25 chr13 82922226 82922385 -36822513 - L2 LINE L2 -830 2484 2317 3358 61 0 0 chr13 82923894 82924318 -36820580 - L1PA5 LINE L1 -12 6142 5719 281 326 91 29 chr13 82926364 82926539 -36818359 - L2 LINE L2 -530 2784 2599 794 158 97 18 chr13 82928047 82928212 -36816686 + MER45A DNA AcHobo 1 178 0 543 281 158 10 chr13 82928962 82929368 -36815530 - L1M4 LINE L1 -1479 4667 4202 1478 159 16 0 chr13 82929368 82929623 -36815275 - Tigger7 DNA MER2_type -8 2483 2225 423 58 159 0 chr13 82929623 82929692 -36815206 - MADE1 DNA Mariner 0 80 1 1219 266 86 72 chr13 82929751 82930617 -36814281 - L1M4 LINE L1 -1971 4175 3284 1957 152 0 3 chr13 82930617 82930907 -36813991 + AluSx SINE Alu 3 291 -21 1219 266 86 72 chr13 82930907 82931285 -36813613 - L1M4 LINE L1 -2862 3284 2913 213 308 31 0 chr13 82933575 82933640 -36811258 + MIR3 SINE MIR 123 189 -19 44 20 0 0 chr13 82934404 82934455 -36810443 + AT_rich Low_complexity Low_complexity 1 51 0 273 330 48 10 chr13 82934472 82934575 -36810323 - MIR3 SINE MIR -31 177 71 249 372 18 9 chr13 82934879 82934992 -36809906 + MIR SINE MIR 2 115 -147 237 190 138 0 chr13 82935095 82935153 -36809745 - MIR SINE MIR -24 238 173 854 318 115 35 chr13 82936278 82937252 -36807646 + L2 LINE L2 2217 3272 0 245 250 26 13 chr13 82938233 82938309 -36806589 + CT-rich Low_complexity Low_complexity 3 79 0 359 281 43 60 chr13 82938345 82938560 -36806338 - MIR SINE MIR -18 244 33 2526 65 13 0 chr13 82938897 82939204 -36805694 + AluSp SINE Alu 1 311 -2 1534 176 71 50 chr13 82939438 82939859 -36805039 + MSTB1 LTR MaLR 1 430 -2 15114 129 18 10 chr13 82940366 82942765 -36802133 + Tigger1 DNA MER2_type 1 2418 0 4560 68 8 10 chr13 82943229 82943842 -36801056 + L1PA10 LINE L1 5545 6156 -12 22 56 0 0 chr13 82943970 82944006 -36800892 + AT_rich Low_complexity Low_complexity 1 36 0 827 187 84 98 chr13 82944623 82945036 -36799862 + MLT1D LTR MaLR 1 495 -10 2273 129 14 0 chr13 82945590 82945939 -36798959 + L1PA15 LINE L1 5811 6164 -1 2473 88 0 0 chr13 82946696 82947003 -36797895 + AluSq SINE Alu 2 308 -5 354 304 90 50 chr13 82947172 82947373 -36797525 + MIR SINE MIR 35 243 -19 342 297 31 56 chr13 82947459 82947654 -36797244 - L1ME4a LINE L1 -48 6073 5884 27 29 0 0 chr13 82947891 82947925 -36796973 + AT_rich Low_complexity Low_complexity 1 34 0 225 146 0 42 chr13 82948874 82948922 -36795976 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 735 285 145 28 chr13 82949626 82950054 -36794844 + MLT1J LTR MaLR 3 480 -31 718 295 78 4 chr13 82950428 82950672 -36794226 - MIR SINE MIR 0 262 1 2252 105 3 0 chr13 82951184 82951479 -36793419 + AluSx SINE Alu 3 298 -14 756 300 88 11 chr13 82951920 82952180 -36792718 + MLT1J LTR MaLR 2 281 -230 1547 214 106 37 chr13 82952217 82952651 -36792247 + MLT1D LTR MaLR 20 483 -22 411 318 50 15 chr13 82952674 82952872 -36792026 + MLT1J LTR MaLR 292 496 -15 294 274 234 0 chr13 82953348 82953472 -36791426 + MIR SINE MIR 95 247 -15 921 177 79 10 chr13 82956734 82956937 -36787961 - MER20 DNA MER1_type -2 217 1 273 29 0 0 chr13 82957387 82957421 -36787477 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr13 82958280 82958301 -36786597 + AT_rich Low_complexity Low_complexity 1 21 0 263 347 60 12 chr13 82958554 82958805 -36786093 + L1ME LINE L1 5555 5817 -304 32 26 0 0 chr13 82959029 82959068 -36785830 + AT_rich Low_complexity Low_complexity 1 39 0 2262 117 0 0 chr13 82959078 82959376 -36785522 - AluSx SINE Alu -14 298 1 1887 143 61 28 chr13 82959522 82959885 -36785013 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr13 82960427 82960455 -36784443 + AT_rich Low_complexity Low_complexity 1 28 0 502 224 224 0 chr13 82960473 82960625 -36784273 + MER5A DNA MER1_type 2 187 -2 545 286 33 0 chr13 82961697 82961879 -36783019 - MER5A DNA MER1_type 0 189 2 237 325 25 56 chr13 82961927 82962087 -36782811 + MLT1L LTR MaLR 5 159 -456 285 294 67 17 chr13 82962354 82962473 -36782425 + MLT1L LTR MaLR 412 536 -79 356 182 11 0 chr13 82962510 82962598 -36782300 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 311 348 119 36 chr13 82962918 82963497 -36781401 + L2 LINE L2 2634 3256 -57 276 246 58 0 chr13 82963644 82963713 -36781185 - MIR SINE MIR -98 164 92 206 272 227 8 chr13 82964693 82964849 -36780049 + MIR3 SINE MIR 3 185 -70 281 389 70 37 chr13 82964989 82965259 -36779639 + L2 LINE L2 2993 3271 -1 1123 145 34 21 chr13 82967868 82968103 -36776795 - L1MB8 LINE L1 0 6178 5941 1028 239 93 93 chr13 82968545 82969051 -36775847 + MLT1J LTR MaLR 1 506 -5 212 372 140 9 chr13 82969531 82969867 -36775031 + L2 LINE L2 2598 2977 -337 300 310 55 21 chr13 82970032 82970177 -36774721 + L2 LINE L2 3163 3312 -1 1947 148 143 13 chr13 82970243 82970622 -36774276 + MSTA LTR MaLR 1 428 0 212 314 14 0 chr13 82971026 82971096 -36773802 + L2 LINE L2 2365 2435 -879 1342 193 48 15 chr13 82971098 82971435 -36773463 + MLT1A1 LTR MaLR 1 348 -17 422 329 64 106 chr13 82971447 82971948 -36772950 + L2 LINE L2 2435 2914 -400 1053 214 4 13 chr13 82971972 82972206 -36772692 - AluJo SINE Alu 0 312 81 2181 109 0 0 chr13 82972214 82972511 -36772387 - AluSg SINE Alu 0 306 10 415 295 23 8 chr13 82972549 82972678 -36772220 + L2 LINE L2 3142 3272 0 26 30 0 0 chr13 82973252 82973285 -36771613 + AT_rich Low_complexity Low_complexity 1 33 0 37 0 0 0 chr13 82976854 82976891 -36768007 + AT_rich Low_complexity Low_complexity 1 37 0 1662 249 79 42 chr13 82978341 82978908 -36765990 + MLT1E LTR MaLR 1 588 -5 1800 148 25 85 chr13 82979007 82979162 -36765736 - THE1C LTR MaLR 0 375 212 1746 109 8 12 chr13 82979162 82979432 -36765466 + AluSg SINE Alu 37 305 0 1800 148 25 85 chr13 82979432 82979512 -36765386 - THE1C LTR MaLR -163 212 129 2227 110 13 0 chr13 82979512 82979820 -36765078 + AluSx SINE Alu 1 312 0 1800 148 25 85 chr13 82979820 82979981 -36764917 - THE1C LTR MaLR -246 129 1 1405 216 44 33 chr13 82981321 82981687 -36763211 - MLT1A2 LTR MaLR -4 370 1 411 306 75 19 chr13 82983215 82983483 -36761415 - MLT1J LTR MaLR 0 511 229 289 308 106 0 chr13 82985201 82985305 -36759593 - MLT1J LTR MaLR -80 431 317 296 271 93 19 chr13 82985338 82985445 -36759453 + MIR SINE MIR 40 154 -108 214 272 148 0 chr13 82986107 82986188 -36758710 + MIR SINE MIR 160 252 -10 2206 117 0 3 chr13 82986431 82986729 -36758169 + AluSg SINE Alu 1 297 -13 253 286 46 86 chr13 82986903 82987078 -36757820 + L2 LINE L2 3123 3290 -23 428 339 106 43 chr13 82987311 82987612 -36757286 + L2 LINE L2 2953 3272 0 3101 83 37 7 chr13 82987959 82988008 -36756890 - MLT2A1 LTR ERVL 0 444 398 396 40 0 0 chr13 82988008 82988058 -36756840 + (CA)n Simple_repeat Simple_repeat 2 51 0 3101 83 37 7 chr13 82988058 82988439 -36756459 - MLT2A1 LTR ERVL -46 398 1 23312 65 6 4 chr13 82988439 82991494 -36753404 - HERVL-A1 LTR ERVL 0 5654 2592 421 90 90 13 chr13 82991497 82991575 -36753323 - MLT2A1 LTR ERVL -360 84 1 1623 80 4 4 chr13 82991888 82992114 -36752784 + HERVL LTR ERVL 2757 2982 -2672 677 186 0 7 chr13 82992666 82992811 -36752087 + GA-rich Low_complexity Low_complexity 2 145 0 189 0 0 0 chr13 82992831 82992852 -36752046 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 2196 100 0 17 chr13 82992962 82993261 -36751637 - AluY SINE Alu -15 296 3 1352 125 180 90 chr13 82993261 82993605 -36751293 - MSTA LTR MaLR 0 428 1 221 335 108 36 chr13 82993615 82993809 -36751089 - MIR SINE MIR -54 208 1 785 199 48 18 chr13 82994437 82994603 -36750295 - FAM SINE Alu -4 171 1 1571 179 52 91 chr13 82994753 82995324 -36749574 - MER69 DNA AcHobo 0 2526 1978 391 213 294 0 chr13 82995376 82995512 -36749386 - MER69 DNA AcHobo -2119 407 232 332 255 137 0 chr13 82995613 82995715 -36749183 + MER69 DNA AcHobo 314 429 -2097 252 0 0 0 chr13 82997332 82997360 -36747538 + (TG)n Simple_repeat Simple_repeat 1 28 0 1628 174 7 50 chr13 82997391 82997713 -36747185 - AluJo SINE Alu 0 309 1 2453 85 0 0 chr13 82997716 82998023 -36746875 - AluSc SINE Alu -2 307 1 22 0 0 0 chr13 82998023 82998045 -36746853 + AT_rich Low_complexity Low_complexity 1 22 0 341 298 152 11 chr13 82998232 82998423 -36746475 + MIR SINE MIR 37 254 -8 3765 130 56 77 chr13 83000427 83001229 -36743669 + LTR1 LTR ERV1 1 785 0 2041 153 0 0 chr13 83001476 83001777 -36743121 - AluSx SINE Alu -11 301 1 2674 17 0 0 chr13 83001842 83002136 -36742762 + AluY SINE Alu 1 294 -17 352 341 6 49 chr13 83002473 83002637 -36742261 - MIR SINE MIR -91 171 15 1448 242 46 18 chr13 83002669 83003127 -36741771 + L1MC4a LINE L1 7232 7702 -106 254 29 29 0 chr13 83003601 83003636 -36741262 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 545 283 53 0 chr13 83003958 83004110 -36740788 + MIR SINE MIR 13 172 -90 821 246 119 51 chr13 83004338 83004851 -36740047 - MLT1H1 LTR MaLR 0 555 8 592 300 116 17 chr13 83005767 83006000 -36738898 - MIR SINE MIR -5 257 2 265 343 56 19 chr13 83006051 83006159 -36738739 + L2 LINE L2 3147 3258 -14 295 119 0 0 chr13 83007113 83007155 -36737743 - 5S rRNA rRNA -79 42 1 320 281 111 30 chr13 83008368 83008503 -36736395 - MIR3 SINE MIR -43 165 20 270 0 0 0 chr13 83010642 83010672 -36734226 + (T)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr13 83011134 83011158 -36733740 + AT_rich Low_complexity Low_complexity 1 24 0 1247 176 13 25 chr13 83011158 83011396 -36733502 - AluJo SINE Alu -23 289 55 2056 143 10 0 chr13 83011971 83012272 -36732626 - AluSx SINE Alu -8 304 1 280 192 64 0 chr13 83012430 83012506 -36732392 + MER58B DNA MER1_type 67 147 -194 5003 139 83 5 chr13 83012506 83013385 -36731513 - Tigger3b DNA MER2_type 0 1231 284 482 229 0 10 chr13 83013387 83013483 -36731415 - Tigger3b DNA MER2_type -1128 103 9 780 176 75 37 chr13 83013491 83013679 -36731219 + MER58B DNA MER1_type 146 340 -1 26786 157 22 27 chr13 83013962 83014350 -36730548 - L1PA10 LINE L1 -2 6166 5777 2368 91 0 0 chr13 83014350 83014647 -36730251 - AluSq SINE Alu -16 297 1 26786 157 22 27 chr13 83014647 83020462 -36724436 - L1PA10 LINE L1 -391 5777 1 523 183 11 0 chr13 83020961 83021054 -36723844 - MLT1B LTR MaLR -25 365 272 1502 183 14 24 chr13 83021331 83021664 -36723234 - AluJo SINE Alu 0 356 27 23 0 0 0 chr13 83023440 83023463 -36721435 + AT_rich Low_complexity Low_complexity 1 23 0 1941 162 28 3 chr13 83024152 83024504 -36720394 - MER46B DNA MER2_type 0 236 1 885 113 45 0 chr13 83024725 83024924 -36719974 + AluSg/x SINE Alu 170 374 0 340 315 94 40 chr13 83025160 83025586 -36719312 - L1ME3A LINE L1 -342 5828 5380 941 182 49 25 chr13 83025622 83025825 -36719073 - AluJo SINE Alu -15 297 90 561 275 112 23 chr13 83025855 83026339 -36718559 - L1ME3A LINE L1 -804 5342 4816 2310 91 0 3 chr13 83026353 83026651 -36718247 + AluSq SINE Alu 1 297 -16 41 0 0 0 chr13 83026686 83026727 -36718171 + AT_rich Low_complexity Low_complexity 1 41 0 2002 169 38 85 chr13 83027533 83028061 -36716837 - MLT1D LTR MaLR -2 503 1 2731 26 0 0 chr13 83030342 83030653 -36714245 - AluY SINE Alu 0 311 1 4621 164 37 31 chr13 83031204 83032176 -36712722 - L1MA9 LINE L1 0 6312 5335 680 269 12 0 chr13 83032176 83032336 -36712562 + FRAM SINE Alu 1 161 -15 795 21 0 0 chr13 83032337 83032430 -36712468 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 288 123 35 0 chr13 83032430 83032487 -36712411 - L1M LINE L1 -952 5351 5293 285 284 26 72 chr13 83032646 83032840 -36712058 + L2 LINE L2 2946 3130 -183 530 335 100 44 chr13 83032970 83033451 -36711447 + L2 LINE L2 2804 3311 -2 265 214 71 29 chr13 83033725 83033795 -36711103 - MIR SINE MIR -55 153 81 627 0 12 24 chr13 83033818 83033903 -36710995 + (TA)n Simple_repeat Simple_repeat 2 85 0 187 268 0 0 chr13 83034669 83034710 -36710188 - MIR SINE MIR -4 258 218 344 206 108 103 chr13 83034885 83035108 -36709790 - L2 LINE L2 -1 3312 3089 215 392 10 0 chr13 83035087 83035189 -36709709 - L2 LINE L2 -440 2874 2772 * 21 0 0 0 chr13 83035288 83035309 -36709589 + AT_rich Low_complexity Low_complexity 1 21 0 183 301 14 82 chr13 83035460 83035533 -36709365 - L2 LINE L2 -4 3268 3201 1879 208 32 134 chr13 83036273 83036864 -36708034 + MLT1E2 LTR MaLR 1 505 0 235 348 142 44 chr13 83036870 83037209 -36707689 - L2 LINE L2 -671 2643 2272 22 70 0 0 chr13 83037297 83037340 -36707558 + AT_rich Low_complexity Low_complexity 1 43 0 2530 235 85 58 chr13 83038044 83038190 -36706708 - L1MD2 LINE L1 -1 6358 6217 2211 94 0 0 chr13 83038190 83038476 -36706422 + AluSx SINE Alu 1 286 -26 495 0 0 0 chr13 83038476 83038531 -36706367 + (CA)n Simple_repeat Simple_repeat 2 56 0 2530 235 85 58 chr13 83038531 83039273 -36705625 - L1MD2 LINE L1 -141 6218 5445 231 216 11 91 chr13 83040038 83040126 -36704772 + MER103 DNA DNA 39 119 -47 836 137 0 7 chr13 83040430 83040569 -36704329 + L1PA10 LINE L1 6018 6155 -13 23 33 0 0 chr13 83040575 83040605 -36704293 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr13 83040672 83040703 -36704195 + AT_rich Low_complexity Low_complexity 1 31 0 3718 166 39 5 chr13 83040707 83041560 -36703338 - L1M2 LINE L1 -762 5384 4592 21 0 0 0 chr13 83043315 83043336 -36701562 + AT_rich Low_complexity Low_complexity 1 21 0 1609 204 11 55 chr13 83043375 83043757 -36701141 + MLT1A1 LTR MaLR 1 365 0 329 345 88 7 chr13 83044290 83044438 -36700460 + L2 LINE L2 3109 3268 -4 27 0 0 0 chr13 83046462 83046489 -36698409 + AT_rich Low_complexity Low_complexity 1 27 0 2185 136 123 5 chr13 83046546 83046929 -36697969 + MSTA LTR MaLR 1 428 0 1527 148 69 49 chr13 83048790 83049095 -36695803 - AluJo SINE Alu -1 311 1 431 91 0 0 chr13 83049471 83049526 -36695372 + Charlie3 DNA MER1_type 2652 2706 -4 2216 114 7 0 chr13 83049546 83049853 -36695045 + AluSx SINE Alu 1 309 -3 793 246 109 27 chr13 83050128 83050348 -36694550 - MIR SINE MIR -14 248 11 202 260 40 0 chr13 83050364 83050414 -36694484 + GA-rich Low_complexity Low_complexity 3 54 0 225 0 0 0 chr13 83052298 83052323 -36692575 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2082 110 4 0 chr13 83052327 83052600 -36692298 - AluSg SINE Alu -36 274 1 202 200 25 0 chr13 83052849 83052889 -36692009 + GA-rich Low_complexity Low_complexity 2 42 0 603 207 127 0 chr13 83053219 83053369 -36691529 + MER20 DNA MER1_type 51 219 0 583 281 6 11 chr13 83053645 83053823 -36691075 - MER5B DNA MER1_type -1 177 1 24 0 0 0 chr13 83054713 83054737 -36690161 + AT_rich Low_complexity Low_complexity 1 24 0 2061 121 3 23 chr13 83055272 83055579 -36689319 + AluSg SINE Alu 1 301 -9 221 330 40 10 chr13 83055843 83055943 -36688955 + MIR SINE MIR 32 134 -128 1183 202 3 125 chr13 83056583 83056920 -36687978 - AluSq SINE Alu -5 298 3 253 230 106 35 chr13 83056932 83057045 -36687853 + MIR SINE MIR 136 256 -6 22 56 0 0 chr13 83058195 83058231 -36686667 + AT_rich Low_complexity Low_complexity 1 36 0 325 294 81 0 chr13 83058498 83058634 -36686264 + L1ME4a LINE L1 5965 6111 -10 2501 173 15 0 chr13 83060916 83061385 -36683513 - L1MB1 LINE L1 -13 6155 5680 2160 164 37 28 chr13 83061385 83061476 -36683422 + L1M3 LINE L1 5237 5326 -842 2178 114 0 3 chr13 83061476 83061773 -36683125 + AluSx SINE Alu 1 296 -16 2160 164 37 28 chr13 83061773 83061928 -36682970 + L1M3 LINE L1 5326 5478 -690 2189 107 3 7 chr13 83061928 83062227 -36682671 + AluSq SINE Alu 1 298 -15 2160 164 37 28 chr13 83062227 83062445 -36682453 + L1M3 LINE L1 5478 5708 -460 189 0 0 0 chr13 83062503 83062524 -36682374 + (AAGTG)n Simple_repeat Simple_repeat 5 25 0 473 298 8 16 chr13 83063631 83063752 -36681146 + MIR SINE MIR 32 151 -111 309 252 104 22 chr13 83064015 83064150 -36680748 - MLT1K LTR MaLR 0 588 443 2141 116 17 0 chr13 83064638 83064931 -36679967 + AluSx SINE Alu 1 298 -14 181 416 8 24 chr13 83065028 83065153 -36679745 + L2 LINE L2 3133 3255 -17 785 249 61 0 chr13 83065293 83065490 -36679408 - MER58A DNA MER1_type -11 213 5 25 31 0 0 chr13 83065803 83065835 -36679063 + AT_rich Low_complexity Low_complexity 1 32 0 755 274 124 4 chr13 83068062 83068288 -36676610 + MIR SINE MIR 4 256 -6 21 0 0 0 chr13 83068344 83068365 -36676533 + AT_rich Low_complexity Low_complexity 1 21 0 1936 141 7 7 chr13 83068504 83068794 -36676104 + AluSx SINE Alu 1 290 -22 280 364 80 11 chr13 83069126 83069390 -36675508 + HAL1b LINE L1 300 581 -767 592 134 0 18 chr13 83069583 83069793 -36675105 + AluSx SINE Alu 1 279 -31 687 95 0 0 chr13 83069805 83069910 -36674988 + (TA)n Simple_repeat Simple_repeat 1 105 0 29 28 0 0 chr13 83070230 83070266 -36674632 + AT_rich Low_complexity Low_complexity 1 36 0 306 0 0 0 chr13 83070828 83070862 -36674036 + (TG)n Simple_repeat Simple_repeat 2 35 0 27 29 0 0 chr13 83071350 83071384 -36673514 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 83071414 83071435 -36673463 + AT_rich Low_complexity Low_complexity 1 21 0 196 370 0 0 chr13 83072081 83072154 -36672744 - MIR SINE MIR -187 75 3 285 283 212 10 chr13 83072264 83072363 -36672535 - MIR SINE MIR -126 136 18 1616 153 31 60 chr13 83072787 83072907 -36671991 - L1MA8 LINE L1 -3 6288 6166 2488 86 0 10 chr13 83072907 83073221 -36671677 - AluY SINE Alu 0 311 1 1616 153 31 60 chr13 83073221 83073326 -36671572 - L1MA8 LINE L1 -125 6166 6059 1941 121 49 82 chr13 83073326 83073714 -36671184 - THE1C LTR MaLR 0 375 1 1616 153 31 60 chr13 83073714 83073900 -36670998 - L1MA8 LINE L1 -232 6059 5888 206 319 53 26 chr13 83073970 83074083 -36670815 + L2 LINE L2 3175 3290 -23 4238 142 32 8 chr13 83074144 83074778 -36670120 + Tigger1 DNA MER2_type 28 684 -1734 1436 170 0 0 chr13 83074778 83075013 -36669885 + MER46A DNA MER2_type 2 236 0 4238 142 32 8 chr13 83075013 83075133 -36669765 + Tigger1 DNA MER2_type 684 800 -1618 2224 113 17 0 chr13 83075114 83075459 -36669439 + Tigger1 DNA MER2_type 893 1243 -1175 * 186 43 0 0 chr13 83075822 83075845 -36669053 + (T)n Simple_repeat Simple_repeat 1 23 0 318 244 23 0 chr13 83076744 83076830 -36668068 - Tigger1 DNA MER2_type 0 2418 2331 201 297 149 0 chr13 83077067 83077141 -36667757 - L2 LINE L2 0 3313 3229 261 0 0 0 chr13 83077152 83077181 -36667717 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 671 286 112 14 chr13 83077760 83078047 -36666851 - MLT1J LTR MaLR -174 337 23 12431 53 78 4 chr13 83078047 83079787 -36665111 + L1PA2 LINE L1 5 1872 -4274 16876 29 0 0 chr13 83079787 83082560 -36662338 + L1PA2 LINE L1 3377 6153 -2 198 380 50 0 chr13 83082657 83082757 -36662141 - L3 LINE CR1 -1003 574 470 2230 118 7 0 chr13 83082993 83083290 -36661608 + AluSq SINE Alu 1 299 -14 498 33 0 0 chr13 83084117 83084177 -36660721 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2114 110 7 3 chr13 83084316 83084615 -36660283 + AluSx SINE Alu 1 300 -12 226 339 101 9 chr13 83085170 83085279 -36659619 - L2 LINE L2 -5 3267 3149 1622 182 24 0 chr13 83085547 83085838 -36659060 + AluJb SINE Alu 1 298 -14 1544 223 43 43 chr13 83086898 83087374 -36657524 + L1ME1 LINE L1 5668 6146 -20 2091 141 87 27 chr13 83087374 83087778 -36657120 - MSTA LTR MaLR 0 428 1 1544 223 43 43 chr13 83087778 83087794 -36657104 + L1ME1 LINE L1 6145 6160 -6 236 318 68 40 chr13 83087802 83087950 -36656948 - MIR SINE MIR -46 216 65 2257 109 0 10 chr13 83088347 83088658 -36656240 - AluSg SINE Alu -2 308 1 558 314 81 76 chr13 83088901 83089260 -36655638 + L2 LINE L2 2447 2803 -469 2305 110 0 0 chr13 83089260 83089559 -36655339 - AluSg SINE Alu -11 299 1 558 314 81 76 chr13 83089559 83090014 -36654884 + L2 LINE L2 2803 3268 -4 288 77 0 0 chr13 83090585 83090624 -36654274 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 444 202 8 84 chr13 83091873 83091992 -36652906 - L2 LINE L2 -3 3310 3201 1618 148 76 0 chr13 83092006 83092297 -36652601 - AluSx SINE Alu 0 311 1 193 273 13 13 chr13 83092890 83092967 -36651931 - L2 LINE L2 -119 3194 3118 219 36 0 0 chr13 83092971 83092999 -36651899 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 679 332 61 52 chr13 83093324 83093998 -36650900 + L2 LINE L2 2579 3255 -17 505 246 56 45 chr13 83094737 83094916 -36649982 + MIR SINE MIR 70 250 -12 2255 119 0 6 chr13 83095774 83096086 -36648812 - AluSq SINE Alu -3 310 1 1358 180 22 44 chr13 83096192 83096553 -36648345 - MLT1A1 LTR MaLR -14 376 2 191 310 80 35 chr13 83096554 83096667 -36648231 + L2 LINE L2 3181 3298 -15 2062 130 0 0 chr13 83098096 83098381 -36646517 + AluSx SINE Alu 6 290 -22 378 198 20 155 chr13 83098492 83098671 -36646227 - MER5B DNA MER1_type -21 157 15 651 230 67 52 chr13 83098697 83098967 -36645931 + MER5C DNA MER1_type 33 306 -18 210 136 0 0 chr13 83098971 83099015 -36645883 + (TC)n Simple_repeat Simple_repeat 2 45 0 294 73 0 0 chr13 83099017 83099058 -36645840 + (CA)n Simple_repeat Simple_repeat 1 41 0 304 198 11 11 chr13 83099165 83099256 -36645642 + A-rich Low_complexity Low_complexity 3 93 0 428 138 0 12 chr13 83099256 83099336 -36645562 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 389 341 37 24 chr13 83099533 83099697 -36645201 + MIR3 SINE MIR 5 170 -38 34 24 0 0 chr13 83099992 83100033 -36644865 + AT_rich Low_complexity Low_complexity 1 41 0 2282 110 3 0 chr13 83100117 83100418 -36644480 + AluSp SINE Alu 1 302 -11 2324 96 0 7 chr13 83100763 83101066 -36643832 - AluSq SINE Alu -12 301 1 2075 184 151 114 chr13 83101072 83101416 -36643482 + L1MD3 LINE L1 6722 7052 -943 326 194 20 92 chr13 83101416 83101514 -36643384 + MLT1F1 LTR MaLR 35 125 -442 2075 184 151 114 chr13 83101514 83101622 -36643276 + L1MD3 LINE L1 7052 7155 -840 1580 159 84 26 chr13 83101622 83101967 -36642931 - MLT1A1 LTR MaLR 0 365 1 2075 184 151 114 chr13 83101967 83102115 -36642783 + L1MD3 LINE L1 7155 7296 -699 2232 112 0 3 chr13 83102115 83102410 -36642488 + AluSx SINE Alu 2 295 -17 2075 184 151 114 chr13 83102410 83102730 -36642168 + L1MD3 LINE L1 7296 7991 -4 310 175 35 0 chr13 83103272 83103415 -36641483 + (TA)n Simple_repeat Simple_repeat 1 148 0 215 333 0 0 chr13 83103465 83103519 -36641379 + MIR SINE MIR 48 101 -161 21 0 0 0 chr13 83103519 83103540 -36641358 + AT_rich Low_complexity Low_complexity 1 21 0 2583 65 0 0 chr13 83103959 83104266 -36640632 - AluY SINE Alu -4 307 1 249 277 209 7 chr13 83104848 83104996 -36639902 + MIR SINE MIR 51 228 -34 2264 98 0 35 chr13 83105282 83105599 -36639299 + AluSx SINE Alu 1 306 -6 320 256 47 0 chr13 83105602 83105688 -36639210 + L1MC4 LINE L1 6614 6703 -1339 716 188 23 118 chr13 83106072 83106278 -36638620 + MER39 LTR ERV1 408 577 -130 2359 98 7 0 chr13 83106278 83106585 -36638313 + AluSq SINE Alu 1 309 -4 716 188 23 118 chr13 83106585 83106682 -36638216 + MER39 LTR ERV1 577 682 -25 318 308 65 9 chr13 83106740 83106847 -36638051 + L2 LINE L2 3160 3272 0 244 302 8 62 chr13 83106862 83106991 -36637907 - L2 LINE L2 -18 3295 3174 287 341 70 40 chr13 83107070 83107346 -36637552 - L2 LINE L2 -273 2999 2713 * 643 299 62 13 chr13 83107331 83107555 -36637343 + MIR SINE MIR 21 255 -7 249 211 0 0 chr13 83107559 83107616 -36637282 + (CA)n Simple_repeat Simple_repeat 2 58 0 538 319 96 51 chr13 83107629 83108255 -36636643 - L2 LINE L2 -575 2739 2086 403 354 125 50 chr13 83108897 83109438 -36635460 - L2 LINE L2 -88 3184 2596 1579 91 5 5 chr13 83109443 83109652 -36635246 + AluSq SINE Alu 1 209 -104 3705 47 0 2 chr13 83109652 83110101 -36634797 + LTR7 LTR ERV1 1 448 -2 6201 104 5 5 chr13 83110103 83111067 -36633831 + HERVH LTR ERV1 1 964 -6749 601 116 0 27 chr13 83111067 83111179 -36633719 + HERVH LTR ERV1 868 976 -6737 500 163 57 35 chr13 83112094 83112235 -36632663 + MER103 DNA DNA 10 153 -13 718 182 88 0 chr13 83112236 83112395 -36632503 - MER63A DNA MER1_type 0 210 38 1594 221 68 35 chr13 83112444 83112927 -36631971 - MLT1D LTR MaLR 0 505 7 234 239 0 0 chr13 83114724 83114795 -36630103 + (TA)n Simple_repeat Simple_repeat 1 71 0 1821 157 0 14 chr13 83114993 83115279 -36629619 + AluSx SINE Alu 6 287 -25 2779 116 36 0 chr13 83116241 83116654 -36628244 + MSTA LTR MaLR 1 428 0 1288 237 90 16 chr13 83117007 83117421 -36627477 + MLT1G LTR MaLR 5 494 -73 3117 142 5 37 chr13 83117536 83118163 -36626735 + HERVH LTR ERV1 2389 2995 -4718 911 122 7 0 chr13 83118142 83118290 -36626608 + HERVH LTR ERV1 3140 3288 -4425 * 7789 130 5 7 chr13 83118282 83120007 -36624891 + HERVH LTR ERV1 3492 5149 -2287 1248 137 38 0 chr13 83120008 83120220 -36624678 + HERVH LTR ERV1 5600 5819 -1894 2448 77 42 13 chr13 83120220 83120599 -36624299 + HERVH LTR ERV1 7324 7713 0 3579 54 2 2 chr13 83120599 83121047 -36623851 + LTR7 LTR ERV1 1 448 -2 595 162 0 0 chr13 83121047 83121146 -36623752 + AluSp/q SINE Alu 203 301 -12 1519 163 141 3 chr13 83121404 83121710 -36623188 - MER7A DNA MER2_type 0 346 1 2410 106 0 0 chr13 83122187 83122498 -36622400 - AluSx SINE Alu -1 311 1 318 289 26 9 chr13 83122999 83123113 -36621785 + L1ME LINE L1 5725 5840 -281 5761 62 50 3 chr13 83123135 83123880 -36621018 + LTR17 LTR ERV1 1 780 0 385 359 19 42 chr13 83124028 83124287 -36620611 + MIR SINE MIR 1 253 -9 938 266 37 0 chr13 83124508 83124749 -36620149 + MIR SINE MIR 13 262 0 2312 126 0 0 chr13 83124890 83125200 -36619698 - AluSg SINE Alu 0 310 1 2394 96 0 3 chr13 83125355 83125667 -36619231 + AluY SINE Alu 1 311 0 361 240 35 116 chr13 83126273 83126531 -36618367 + L2 LINE L2 2826 3062 -210 487 187 32 20 chr13 83126732 83126993 -36617905 + GA-rich Low_complexity Low_complexity 1 264 0 28 0 0 0 chr13 83127225 83127253 -36617645 + AT_rich Low_complexity Low_complexity 1 28 0 1528 176 3 83 chr13 83128472 83128677 -36616221 - AluJo SINE Alu -10 302 131 2169 118 7 0 chr13 83128677 83128981 -36615917 + AluSx SINE Alu 1 306 -6 1528 176 3 83 chr13 83128981 83129099 -36615799 - AluJo SINE Alu -181 131 5 364 358 4 41 chr13 83129863 83130106 -36614792 + L2 LINE L2 2641 2874 -440 322 309 65 74 chr13 83130140 83130370 -36614528 - MIR SINE MIR 0 262 35 697 226 0 0 chr13 83132070 83132203 -36612695 + FLAM_A SINE Alu 1 133 0 1013 104 0 8 chr13 83132293 83132427 -36612471 - AluSq/x SINE Alu -180 133 1 279 146 36 0 chr13 83133661 83133716 -36611182 + MER81 DNA DNA 55 111 -3 2189 139 3 0 chr13 83133861 83134170 -36610728 - AluSg SINE Alu 0 310 1 2031 147 0 10 chr13 83135319 83135633 -36609265 + AluSx SINE Alu 1 311 -1 27 29 0 0 chr13 83135659 83135693 -36609205 + AT_rich Low_complexity Low_complexity 1 34 0 189 276 35 17 chr13 83136394 83136452 -36608446 - L3 LINE CR1 -3 1574 1516 367 278 112 77 chr13 83136475 83136734 -36608164 - L2 LINE L2 -1 3312 3045 1021 269 67 29 chr13 83136734 83137184 -36607714 - MLT1C LTR MaLR 0 467 1 959 301 78 76 chr13 83137184 83137268 -36607630 - L2 LINE L2 -264 3049 2967 2124 101 10 0 chr13 83137268 83137581 -36607317 + AluSp SINE Alu 3 318 0 959 301 78 76 chr13 83137581 83137933 -36606965 - L2 LINE L2 -346 2967 2617 2160 106 0 10 chr13 83137933 83138247 -36606651 + AluSc SINE Alu 1 309 0 959 301 78 76 chr13 83138247 83138267 -36606631 - L2 LINE L2 -696 2617 2599 2220 86 4 0 chr13 83138267 83138579 -36606319 + AluSg SINE Alu 1 313 0 959 301 78 76 chr13 83138579 83138726 -36606172 - L2 LINE L2 -714 2599 2454 2509 81 0 0 chr13 83138726 83139036 -36605862 + AluSq SINE Alu 1 310 -3 959 301 78 76 chr13 83139036 83139250 -36605648 - L2 LINE L2 -859 2454 2226 2112 145 0 0 chr13 83139645 83139955 -36604943 - AluSx SINE Alu -1 311 2 228 261 17 34 chr13 83139960 83139975 -36604923 + (TA)n Simple_repeat Simple_repeat 2 16 -102 2132 86 10 14 chr13 83139975 83140266 -36604632 - AluSp SINE Alu -23 290 1 228 261 17 34 chr13 83140266 83140369 -36604529 + (TA)n Simple_repeat Simple_repeat 16 118 0 2197 124 0 0 chr13 83140648 83140954 -36603944 + AluSq SINE Alu 1 306 -7 399 252 86 29 chr13 83141389 83141528 -36603370 + MIR SINE MIR 28 174 -88 26 50 0 0 chr13 83141889 83141929 -36602969 + AT_rich Low_complexity Low_complexity 1 40 0 1264 123 0 11 chr13 83143812 83143999 -36600899 - AluSc SINE Alu 0 309 125 1956 145 15 55 chr13 83144092 83144276 -36600622 + L1MA9 LINE L1 5924 6114 -198 1787 176 3 3 chr13 83144276 83144578 -36600320 + AluJb SINE Alu 1 302 -10 1956 145 15 55 chr13 83144578 83144794 -36600104 + L1MA9 LINE L1 6114 6308 -4 300 53 0 0 chr13 83145310 83145348 -36599550 + (TG)n Simple_repeat Simple_repeat 2 39 0 231 103 0 0 chr13 83145882 83145921 -36598977 + (TG)n Simple_repeat Simple_repeat 2 40 0 2356 108 0 0 chr13 83147154 83147461 -36597437 - AluSc SINE Alu -2 307 1 2149 100 13 20 chr13 83148015 83148316 -36596582 - AluSq SINE Alu -11 302 4 264 367 94 0 chr13 83148842 83148970 -36595928 + MIR SINE MIR 48 187 -75 2181 107 30 0 chr13 83149837 83150137 -36594761 - AluSx SINE Alu -3 309 1 634 298 14 29 chr13 83150142 83150350 -36594548 - MIR SINE MIR -55 207 3 5364 114 0 21 chr13 83150380 83151279 -36593619 - L1PA13 LINE L1 -19 6144 5208 347 223 105 67 chr13 83151427 83151665 -36593233 + HAL1 LINE L1 1045 1291 -1216 240 327 63 34 chr13 83151699 83152078 -36592820 + HAL1 LINE L1 1256 1645 -862 1284 156 0 36 chr13 83152177 83152402 -36592496 + AluJb SINE Alu 88 304 -8 221 336 29 19 chr13 83152610 83152714 -36592184 + MIR SINE MIR 52 156 -106 2349 104 0 7 chr13 83153127 83153434 -36591464 - AluSx SINE Alu -7 305 1 1891 201 34 12 chr13 83153882 83154299 -36590599 - MLT1D LTR MaLR -13 492 67 1637 177 86 70 chr13 83154303 83154615 -36590283 + MER39 LTR ERV1 6 312 -395 2018 125 0 0 chr13 83154615 83154894 -36590004 - AluSq SINE Alu -1 312 34 1637 177 86 70 chr13 83154894 83154985 -36589913 + MER39 LTR ERV1 312 400 -307 1948 100 54 0 chr13 83154985 83155245 -36589653 - AluSx SINE Alu -18 294 21 1637 177 86 70 chr13 83155245 83155377 -36589521 + MER39 LTR ERV1 400 707 0 269 275 0 14 chr13 83155379 83155448 -36589450 - MLT1D LTR MaLR -437 68 1 448 138 12 0 chr13 83156021 83156101 -36588797 - AluSx SINE Alu -2 307 227 1317 98 11 5 chr13 83156101 83156285 -36588613 - AluSx SINE Alu -126 186 2 338 294 83 0 chr13 83156327 83156436 -36588462 + MIR SINE MIR 53 170 -92 242 328 15 0 chr13 83157056 83157123 -36587775 - L3 LINE CR1 -1 1576 1509 2422 71 0 10 chr13 83157159 83157467 -36587431 - AluSc SINE Alu -4 305 1 9073 210 47 19 chr13 83157632 83159895 -36585003 + Cheshire DNA MER1_type 3 2327 -93 940 192 40 0 chr13 83159904 83160102 -36584796 + MER2 DNA MER2_type 7 212 -133 * 1131 160 80 17 chr13 83160085 83160322 -36584576 - MSTB1 LTR MaLR -5 427 176 23 78 0 0 chr13 83160483 83160534 -36584364 + AT_rich Low_complexity Low_complexity 1 51 0 279 293 176 8 chr13 83161750 83161908 -36582990 - MIR SINE MIR -61 147 9 1794 185 7 0 chr13 83162228 83162525 -36582373 + AluJo SINE Alu 1 299 -13 203 171 98 0 chr13 83162729 83162770 -36582128 - L2 LINE L2 -18 3295 3251 2107 98 21 0 chr13 83162884 83163169 -36581729 + AluY SINE Alu 1 291 -20 302 167 0 15 chr13 83163340 83163406 -36581492 + (TG)n Simple_repeat Simple_repeat 2 66 0 2389 91 0 0 chr13 83163645 83163952 -36580946 + AluSc SINE Alu 1 307 -2 649 169 48 0 chr13 83164059 83164183 -36580715 - FLAM_A SINE Alu -3 139 10 3597 130 2 9 chr13 83164716 83165247 -36579651 - MER1A DNA MER1_type 0 527 1 21 0 0 0 chr13 83165255 83165276 -36579622 + AT_rich Low_complexity Low_complexity 1 21 0 386 333 26 13 chr13 83167998 83168154 -36576744 + MIR SINE MIR 21 178 -84 2145 108 7 0 chr13 83168284 83168579 -36576319 + AluSq SINE Alu 1 297 -16 375 217 44 24 chr13 83168579 83168705 -36576193 - L1MC4 LINE L1 -1341 6981 1992 1763 143 12 64 chr13 83169073 83169402 -36575496 - AluSx SINE Alu 0 312 1 2301 112 0 3 chr13 83169413 83169825 -36575073 - AluSq SINE Alu 0 411 1 777 299 141 23 chr13 83169988 83170420 -36574478 - LTR33 LTR ERVL -2 519 37 677 294 40 32 chr13 83170781 83171029 -36573869 + MIR SINE MIR 13 262 0 278 381 7 19 chr13 83171210 83171365 -36573533 - L2 LINE L2 -224 3048 2896 1277 88 41 6 chr13 83171396 83171566 -36573332 - AluSg/x SINE Alu -14 298 123 907 148 6 11 chr13 83171567 83171750 -36573148 + L1MA4 LINE L1 6113 6294 -6 303 260 123 34 chr13 83171830 83171976 -36572922 + L1ME4a LINE L1 5798 5956 -165 298 238 48 0 chr13 83172060 83172123 -36572775 + Tigger3b DNA MER2_type 1 66 -1165 2485 169 50 0 chr13 83172123 83172585 -36572313 - MER52A LTR ERV1 0 1755 1271 5861 123 36 39 chr13 83172590 83172636 -36572262 + Tigger3b DNA MER2_type 108 153 -2875 2446 63 7 0 chr13 83172636 83172935 -36571963 + AluY SINE Alu 1 301 -10 5861 123 36 39 chr13 83172935 83173072 -36571826 + Tigger3b DNA MER2_type 153 289 -2739 2259 88 7 0 chr13 83173072 83173391 -36571507 - AluSp SINE Alu 0 321 1 5861 123 36 39 chr13 83173391 83174331 -36570567 + Tigger3b DNA MER2_type 289 1231 0 218 430 42 14 chr13 83175201 83175415 -36569483 - L2 LINE L2 -215 3057 2838 201 302 153 64 chr13 83175784 83176079 -36568819 + L2 LINE L2 2214 2534 -780 349 375 111 0 chr13 83176901 83176969 -36567929 - MIR SINE MIR 0 262 203 1748 143 69 37 chr13 83176969 83177150 -36567748 - MER46B DNA MER2_type -2496 235 161 2259 94 0 7 chr13 83177150 83177447 -36567451 - AluSc SINE Alu -14 295 1 1748 143 69 37 chr13 83177447 83177614 -36567284 - MER46B DNA MER2_type -2570 161 1 349 375 111 0 chr13 83177614 83177780 -36567118 - MIR SINE MIR -59 203 2 2594 52 0 3 chr13 83177999 83178309 -36566589 - AluY SINE Alu -2 309 1 185 382 23 30 chr13 83178539 83178670 -36566228 + L2 LINE L2 3143 3272 0 190 71 24 24 chr13 83179294 83179336 -36565562 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1360 270 75 38 chr13 83179551 83179750 -36565148 + MLT1F LTR MaLR 1 191 -351 411 21 0 0 chr13 83179750 83179798 -36565100 + (CA)n Simple_repeat Simple_repeat 1 48 0 1360 270 75 38 chr13 83179798 83180094 -36564804 + MLT1F LTR MaLR 191 514 -28 2269 104 3 0 chr13 83180100 83180399 -36564499 - AluSq SINE Alu -13 300 1 23 0 0 0 chr13 83180727 83180750 -36564148 + AT_rich Low_complexity Low_complexity 1 23 0 2381 56 0 3 chr13 83183165 83183480 -36561418 - AluY SINE Alu 0 314 1 2206 109 3 0 chr13 83183483 83183788 -36561110 - AluSq SINE Alu 0 306 1 234 0 0 0 chr13 83183841 83183867 -36561031 + (TC)n Simple_repeat Simple_repeat 2 27 0 212 123 55 0 chr13 83183867 83183940 -36560958 + (TA)n Simple_repeat Simple_repeat 1 77 0 33 56 0 0 chr13 83184192 83184246 -36560652 + AT_rich Low_complexity Low_complexity 1 54 0 183 238 24 0 chr13 83184275 83184317 -36560581 - MIR SINE MIR -77 185 143 485 264 168 47 chr13 83184339 83184702 -36560196 + MLT1I LTR MaLR 3 409 0 2678 30 10 0 chr13 83185403 83185822 -36559076 - L1PA5 LINE L1 -554 5600 5178 4456 48 2 0 chr13 83185822 83186367 -36558531 + L1PA5 LINE L1 5605 6152 -2 1530 267 109 22 chr13 83186837 83187417 -36557481 + L2 LINE L2 2002 2631 -683 338 323 20 0 chr13 83187429 83187528 -36557370 + MER5A DNA MER1_type 11 111 -78 562 319 17 22 chr13 83187581 83187813 -36557085 + L2 LINE L2 2626 2856 -458 338 244 83 58 chr13 83188070 83188275 -36556623 + L1MC5 LINE L1 7701 7910 -51 30 45 0 0 chr13 83188283 83188327 -36556571 + AT_rich Low_complexity Low_complexity 1 44 0 2364 84 3 0 chr13 83188415 83188713 -36556185 - AluSp SINE Alu -14 299 1 1854 185 0 3 chr13 83188713 83189010 -36555888 - AluJb SINE Alu -16 296 1 2206 97 0 0 chr13 83189132 83189444 -36555454 + AluSg SINE Alu 1 312 0 2617 141 26 7 chr13 83189514 83189933 -36554965 - MSTA LTR MaLR -1 427 1 261 273 0 0 chr13 83190053 83190108 -36554790 + L2 LINE L2 3255 3309 -4 671 307 36 14 chr13 83190290 83190570 -36554328 - LTR16A LTR ERVL 0 450 165 266 152 0 0 chr13 83190726 83190772 -36554126 - L1PA16 LINE L1 -10 6156 6111 1854 185 3 0 chr13 83191025 83191322 -36553576 - AluJb SINE Alu -9 303 6 429 132 116 58 chr13 83191326 83191447 -36553451 - L1MB4 LINE L1 -209 5971 5844 1679 195 14 0 chr13 83191618 83191773 -36553125 - AluJb SINE Alu -21 291 129 246 32 0 0 chr13 83191773 83191804 -36553094 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1679 195 14 0 chr13 83191804 83191935 -36552963 - AluJb SINE Alu -183 129 1 9316 175 149 7 chr13 83192207 83194541 -36550357 - L1PBa LINE L1 -4192 2671 6 3730 107 41 63 chr13 83194558 83195242 -36549656 - THE1C-int LTR MaLR -911 669 1 1383 184 49 80 chr13 83195242 83195629 -36549269 - THE1C LTR MaLR 0 375 1 309 26 0 0 chr13 83195669 83195707 -36549191 + (TG)n Simple_repeat Simple_repeat 2 39 0 822 173 0 0 chr13 83195994 83196127 -36548771 + FLAM_C SINE Alu 1 133 0 333 214 0 12 chr13 83196176 83196260 -36548638 + L1PB4 LINE L1 6063 6145 -11 271 266 12 41 chr13 83197158 83197333 -36547565 - L1MB4 LINE L1 -459 5662 5597 195 162 0 0 chr13 83197400 83197437 -36547461 + T-rich Low_complexity Low_complexity 4 40 0 284 306 44 19 chr13 83197455 83197661 -36547237 - L1MB4 LINE L1 -623 5543 5333 2214 84 14 3 chr13 83197707 83197991 -36546907 - AluY SINE Alu -22 289 3 789 243 0 6 chr13 83198669 83198842 -36546056 - FRAM SINE Alu -7 169 1 1512 136 22 114 chr13 83198872 83199006 -36545892 + AluYb8 SINE Alu 3 148 -162 2191 108 3 0 chr13 83199006 83199293 -36545605 + AluSp SINE Alu 1 288 -25 1512 136 22 114 chr13 83199293 83199495 -36545403 + AluYb8 SINE Alu 148 310 0 2422 53 3 23 chr13 83199772 83200072 -36544826 + AluY SINE Alu 1 294 -17 706 202 0 8 chr13 83200141 83200270 -36544628 + FLAM_A SINE Alu 1 128 -5 775 258 52 58 chr13 83201585 83201997 -36542901 - L1MDa LINE L1 -4532 2008 1598 2143 104 0 36 chr13 83201997 83202305 -36542593 - AluY SINE Alu -14 297 1 775 258 52 58 chr13 83202305 83202389 -36542509 - L1MDa LINE L1 -4942 1598 1515 4543 232 32 41 chr13 83202451 83203914 -36540984 - L1MDa LINE L1 -2306 4234 2760 2011 132 10 7 chr13 83203914 83204210 -36540688 + AluSx SINE Alu 1 297 -15 4543 232 32 41 chr13 83204210 83204272 -36540626 - L1MDa LINE L1 -3780 2760 2699 710 193 7 37 chr13 83204272 83204407 -36540491 - FLAM_A SINE Alu -2 131 1 4543 232 32 41 chr13 83204407 83204517 -36540381 - L1MDa LINE L1 -3841 2699 2612 2154 118 3 0 chr13 83204517 83204806 -36540092 - AluSp SINE Alu -22 291 2 4543 232 32 41 chr13 83204806 83204931 -36539967 - L1MDa LINE L1 -3928 2612 2487 192 371 101 19 chr13 83205397 83205556 -36539342 - MIR3 SINE MIR -16 192 21 247 292 75 106 chr13 83207092 83207253 -36537645 - MIR SINE MIR -39 223 68 2145 201 48 8 chr13 83208201 83208679 -36536219 - L1MDa LINE L1 -5710 830 334 5037 117 96 22 chr13 83208829 83210263 -36534635 - pTR5 LTR ERV1 0 2438 743 1927 126 0 32 chr13 83210263 83210439 -36534459 + AluSx SINE Alu 31 196 -116 183 100 0 0 chr13 83210439 83210469 -36534429 + (TGGGGG)n Simple_repeat Simple_repeat 2 31 0 1927 126 0 32 chr13 83210469 83210577 -36534321 + AluSx SINE Alu 196 306 -6 2358 110 0 0 chr13 83210678 83210988 -36533910 + AluSq SINE Alu 1 310 -3 465 277 88 19 chr13 83211262 83211421 -36533477 - MIR SINE MIR -73 189 20 28 0 0 0 chr13 83211447 83211475 -36533423 + AT_rich Low_complexity Low_complexity 1 28 0 424 187 0 0 chr13 83211475 83211550 -36533348 - AluSg/x SINE Alu -22 290 216 1076 157 20 10 chr13 83211642 83211846 -36533052 - Tigger7 DNA MER2_type 0 2487 2282 * 5048 142 18 5 chr13 83211832 83212663 -36532235 - Tigger7 DNA MER2_type -1645 842 1 1635 237 97 13 chr13 83212663 83213211 -36531687 - L1MC4 LINE L1 -211 7831 7238 1390 242 135 16 chr13 83213212 83213275 -36531623 - L1MC4 LINE L1 -954 7088 7034 2329 77 0 0 chr13 83213275 83213574 -36531324 + AluY SINE Alu 2 300 -11 1390 242 135 16 chr13 83213574 83214072 -36530826 - L1MC4 LINE L1 -1008 7034 6460 1701 51 0 32 chr13 83214119 83214312 -36530586 - AluY SINE Alu 0 311 138 2488 63 10 0 chr13 83214312 83214615 -36530283 - AluY SINE Alu -5 306 1 1701 51 0 32 chr13 83214615 83214660 -36530238 - AluY SINE Alu -173 138 93 1257 233 53 31 chr13 83214943 83215300 -36529598 + MLT1A1 LTR MaLR 1 365 0 180 111 0 0 chr13 83216081 83216108 -36528790 + (CA)n Simple_repeat Simple_repeat 2 28 0 2128 132 7 0 chr13 83216586 83216881 -36528017 + AluSq SINE Alu 1 297 -16 3368 249 25 56 chr13 83216896 83217203 -36527695 + L1M4c LINE L1 906 1221 -5161 2417 91 0 3 chr13 83217203 83217510 -36527388 + AluSp SINE Alu 1 306 -7 3368 249 25 56 chr13 83217510 83217580 -36527318 + L1M4c LINE L1 1221 1292 -5090 2297 90 0 3 chr13 83217580 83217870 -36527028 + AluY SINE Alu 1 289 -22 3368 249 25 56 chr13 83217870 83218968 -36525930 + L1M4c LINE L1 1292 2423 -3959 2066 159 0 0 chr13 83218968 83219277 -36525621 - AluJb SINE Alu -3 309 1 3368 249 25 56 chr13 83219277 83219326 -36525572 + L1M4c LINE L1 2423 2472 -3910 2043 125 14 7 chr13 83219326 83219623 -36525275 - AluSq SINE Alu -14 299 1 3368 249 25 56 chr13 83219623 83220824 -36524074 + L1M4c LINE L1 2472 3652 -2730 1646 199 3 23 chr13 83220824 83221130 -36523768 + AluJb SINE Alu 1 300 -12 3368 249 25 56 chr13 83221130 83221346 -36523552 + L1M4c LINE L1 3652 3873 -2509 4216 231 60 43 chr13 83221495 83222233 -36522665 + L1M4c LINE L1 3873 4597 -1785 761 158 0 8 chr13 83222233 83222353 -36522545 + FLAM_C SINE Alu 3 121 -12 4216 231 60 43 chr13 83222353 83222582 -36522316 + L1M4c LINE L1 4597 4821 -1561 2215 116 0 3 chr13 83222582 83222885 -36522013 + AluSx SINE Alu 1 302 -10 4216 231 60 43 chr13 83222885 83223560 -36521338 + L1M4c LINE L1 4821 5543 -839 383 245 110 25 chr13 83223622 83223785 -36521113 - MER21B LTR ERV1 -553 310 134 1096 97 0 0 chr13 83223792 83223936 -36520962 + AluSq/x SINE Alu 1 144 -169 2439 82 0 3 chr13 83223938 83224243 -36520655 + AluSg SINE Alu 1 304 -6 341 202 16 31 chr13 83224416 83224545 -36520353 + T-rich Low_complexity Low_complexity 2 128 0 2168 111 3 0 chr13 83224696 83224985 -36519913 + AluSq SINE Alu 1 290 -23 31 44 0 0 chr13 83224985 83225030 -36519868 + AT_rich Low_complexity Low_complexity 1 45 0 569 256 16 7 chr13 83225086 83225388 -36519510 + HsTC2 DNA Tc2 322 1896 -2 1223 136 104 36 chr13 83225608 83225828 -36519070 + AluSx SINE Alu 10 244 -68 306 0 0 0 chr13 83225828 83225862 -36519036 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2112 122 0 20 chr13 83225882 83226186 -36518712 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr13 83226220 83226242 -36518656 + AT_rich Low_complexity Low_complexity 1 22 0 749 114 0 61 chr13 83226242 83226373 -36518525 - AluSg/x SINE Alu -12 300 178 364 287 107 89 chr13 83226590 83226812 -36518086 + L2 LINE L2 2810 3026 -287 1855 113 36 7 chr13 83226812 83227113 -36517785 + AluSx SINE Alu 2 310 0 364 287 107 89 chr13 83227113 83227384 -36517514 + L2 LINE L2 3026 3313 0 2019 143 17 0 chr13 83227658 83227958 -36516940 + AluSx SINE Alu 1 305 -7 932 219 41 24 chr13 83227959 83228205 -36516693 - MLT2D LTR ERVL -164 250 1 1487 85 0 71 chr13 83228257 83228481 -36516417 + AluSg/x SINE Alu 83 290 -20 322 335 49 12 chr13 83228703 83228867 -36516031 + MIR SINE MIR 1 170 -92 1797 190 0 7 chr13 83229247 83229552 -36515346 - AluJo SINE Alu -9 303 1 235 349 58 35 chr13 83229564 83229736 -36515162 - MIR SINE MIR -66 196 21 1817 143 15 4 chr13 83229876 83230148 -36514750 + AluSx SINE Alu 1 275 -37 252 59 0 0 chr13 83230151 83230185 -36514713 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1676 186 16 16 chr13 83232057 83232368 -36512530 - AluJb SINE Alu 0 312 2 480 321 80 22 chr13 83232897 83233121 -36511777 + MIR SINE MIR 20 256 -6 2394 97 0 0 chr13 83233785 83234093 -36510805 - AluSx SINE Alu -4 308 1 455 311 104 37 chr13 83234643 83234807 -36510091 + MIR3 SINE MIR 8 182 -26 1863 143 27 7 chr13 83235141 83235434 -36509464 - AluSg1 SINE Alu -10 299 1 2138 105 3 17 chr13 83235520 83235815 -36509083 + AluSc SINE Alu 2 292 -17 2348 98 3 0 chr13 83235994 83236309 -36508589 + AluSp SINE Alu 1 316 0 1333 172 58 31 chr13 83236318 83236579 -36508319 - AluJb SINE Alu -10 302 35 645 157 0 0 chr13 83236714 83236829 -36508069 + CT-rich Low_complexity Low_complexity 3 117 0 2154 103 4 0 chr13 83236833 83237114 -36507784 - AluSp SINE Alu -31 282 1 398 297 113 9 chr13 83237116 83237345 -36507553 + Charlie7 DNA MER1_type 283 535 -2077 229 253 74 0 chr13 83237478 83237573 -36507325 + Charlie7 DNA MER1_type 2229 2330 -282 32 43 0 0 chr13 83237697 83237743 -36507155 + AT_rich Low_complexity Low_complexity 1 46 0 1815 191 0 0 chr13 83237748 83238051 -36506847 + AluJb SINE Alu 1 303 -9 1632 179 55 57 chr13 83238074 83238318 -36506580 - Charlie1 DNA MER1_type -161 2600 2357 2256 62 62 3 chr13 83238318 83238610 -36506288 + AluY SINE Alu 1 309 -2 1632 179 55 57 chr13 83238610 83238889 -36506009 - Charlie1 DNA MER1_type -404 2357 2078 192 77 0 0 chr13 83239726 83239752 -36505146 + (TTC)n Simple_repeat Simple_repeat 2 27 0 207 342 60 60 chr13 83240499 83240648 -36504250 + L2 LINE L2 2947 3095 -177 2191 108 3 3 chr13 83241142 83241439 -36503459 - AluSg SINE Alu -13 297 1 232 381 57 9 chr13 83241482 83241587 -36503311 + L2 LINE L2 3140 3249 -23 2259 112 3 0 chr13 83242021 83242325 -36502573 + AluSp SINE Alu 1 305 -8 393 216 0 0 chr13 83242359 83242447 -36502451 + (TA)n Simple_repeat Simple_repeat 1 88 0 1657 163 10 23 chr13 83242447 83242748 -36502150 - AluSx SINE Alu -15 297 1 25 31 0 0 chr13 83242959 83242991 -36501907 + AT_rich Low_complexity Low_complexity 1 32 0 872 308 126 19 chr13 83243020 83243394 -36501504 - L2 LINE L2 -2845 469 56 892 105 0 0 chr13 83243687 83243801 -36501097 + AluSg SINE Alu 1 114 -196 2450 78 0 0 chr13 83243806 83244113 -36500785 + AluY SINE Alu 5 311 0 1754 67 0 0 chr13 83244113 83244319 -36500579 + AluSg SINE Alu 105 312 0 348 319 148 14 chr13 83244377 83244722 -36500176 + L1M4 LINE L1 4299 4689 -1457 2225 92 0 3 chr13 83244958 83245261 -36499637 + AluY SINE Alu 1 302 -9 1817 186 0 0 chr13 83245274 83245565 -36499333 + AluJb SINE Alu 1 291 -21 1468 109 55 19 chr13 83246159 83246415 -36498483 - L1MA5 LINE L1 -1 6299 6035 256 301 86 0 chr13 83246423 83246516 -36498382 - L2 LINE L2 -957 2357 2257 391 319 49 22 chr13 83246801 83246986 -36497912 - MIR SINE MIR -10 252 63 201 162 0 0 chr13 83247405 83247442 -36497456 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 695 186 18 0 chr13 83247445 83247558 -36497340 - FLAM_C SINE Alu -24 119 5 1999 110 40 0 chr13 83247898 83248170 -36496728 + AluSq SINE Alu 1 283 -30 1079 146 42 0 chr13 83248412 83248577 -36496321 - AluJb SINE Alu -6 306 135 21 0 0 0 chr13 83249742 83249763 -36495135 + AT_rich Low_complexity Low_complexity 1 21 0 219 188 0 0 chr13 83249931 83249979 -36494919 + C-rich Low_complexity Low_complexity 5 52 0 1878 120 7 4 chr13 83249992 83250267 -36494631 - AluSx SINE Alu -36 276 1 2010 122 6 39 chr13 83250750 83251062 -36493836 + AluSx SINE Alu 1 302 -10 2220 110 0 13 chr13 83251189 83251519 -36493379 + AluSg SINE Alu 1 310 0 1105 206 154 16 chr13 83252002 83252255 -36492643 + AluJo SINE Alu 1 288 -14 1502 144 42 69 chr13 83252296 83252656 -36492242 - MER31A LTR ERV1 0 485 136 1363 172 22 0 chr13 83252759 83252991 -36491907 + AluJo SINE Alu 1 237 -75 1851 144 3 3 chr13 83253025 83253310 -36491588 + AluY SINE Alu 5 289 -22 3368 256 28 43 chr13 83253313 83254408 -36490490 + L1M4c LINE L1 1247 2357 -4025 2066 159 0 0 chr13 83254408 83254717 -36490181 - AluJb SINE Alu -3 309 1 3368 256 28 43 chr13 83254717 83254766 -36490132 + L1M4c LINE L1 2357 2405 -3977 2043 125 14 7 chr13 83254766 83255063 -36489835 - AluSq SINE Alu -14 299 1 3368 256 28 43 chr13 83255063 83256264 -36488634 + L1M4c LINE L1 2405 3655 -2727 1646 199 3 23 chr13 83256264 83256570 -36488328 + AluJb SINE Alu 1 300 -12 3368 256 28 43 chr13 83256570 83256786 -36488112 + L1M4c LINE L1 3655 3873 -2509 4252 233 61 42 chr13 83256935 83257673 -36487225 + L1M4c LINE L1 3873 4595 -1787 761 158 0 8 chr13 83257673 83257793 -36487105 + FLAM_C SINE Alu 3 121 -12 4252 233 61 42 chr13 83257793 83258022 -36486876 + L1M4c LINE L1 4595 4818 -1564 2194 119 0 3 chr13 83258022 83258325 -36486573 + AluSx SINE Alu 1 302 -10 4252 233 61 42 chr13 83258325 83258995 -36485903 + L1M4c LINE L1 4818 5543 -839 383 245 110 25 chr13 83259057 83259220 -36485678 - MER21B LTR ERV1 -553 310 134 1096 97 0 0 chr13 83259227 83259371 -36485527 + AluSq/x SINE Alu 1 144 -169 2439 82 0 3 chr13 83259373 83259678 -36485220 + AluSg SINE Alu 1 304 -6 596 100 0 0 chr13 83259922 83260002 -36484896 - AluS SINE Alu -232 80 1 2245 83 14 3 chr13 83260040 83260328 -36484570 + AluSg SINE Alu 1 291 -19 660 209 65 51 chr13 83260332 83260547 -36484351 - HsTC2 DNA Tc2 -1670 228 11 2381 75 0 0 chr13 83260656 83260948 -36483950 - AluSc SINE Alu -17 292 1 338 264 66 0 chr13 83261280 83261386 -36483512 - MIR SINE MIR -67 195 83 901 196 93 129 chr13 83261466 83261683 -36483215 + MSTB2 LTR MaLR 1 224 -233 2008 156 0 0 chr13 83261683 83261991 -36482907 + AluSx SINE Alu 1 308 -4 901 196 93 129 chr13 83261991 83262193 -36482705 + MSTB2 LTR MaLR 224 404 -53 2087 106 35 0 chr13 83262193 83262477 -36482421 - AluSx SINE Alu -18 294 1 901 196 93 129 chr13 83262477 83262530 -36482368 + MSTB2 LTR MaLR 404 457 0 2291 98 3 3 chr13 83262842 83263137 -36481761 + AluSg SINE Alu 3 297 -13 582 148 0 28 chr13 83263218 83263326 -36481572 + AluY SINE Alu 205 309 -2 852 121 0 45 chr13 83263431 83263563 -36481335 - FLAM_C SINE Alu -17 126 1 2107 104 11 4 chr13 83263666 83263988 -36480910 + AluSc SINE Alu 1 324 0 2317 99 0 7 chr13 83263988 83264292 -36480606 + AluY SINE Alu 1 302 -9 254 217 76 0 chr13 83264386 83264478 -36480420 + HAL1b LINE L1 989 1087 -261 452 314 85 14 chr13 83264809 83265032 -36479866 - MIR SINE MIR -13 249 11 2187 89 45 0 chr13 83265082 83265374 -36479524 - AluSq SINE Alu -8 305 1 464 243 0 36 chr13 83265572 83265683 -36479215 - FLAM_A SINE Alu -1 141 35 624 206 89 106 chr13 83265834 83265878 -36479020 - AluJo SINE Alu -135 177 134 2531 68 13 0 chr13 83265878 83266186 -36478712 - AluSp SINE Alu -1 312 1 624 206 89 106 chr13 83266186 83266321 -36478577 - AluJo SINE Alu -178 134 1 1162 156 5 19 chr13 83266325 83266530 -36478368 - MER20 DNA MER1_type 0 219 18 2329 91 10 0 chr13 83266559 83266857 -36478041 - AluSg SINE Alu -9 301 1 216 0 0 0 chr13 83267514 83267538 -36477360 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1694 120 55 47 chr13 83267543 83267817 -36477081 - AluSg SINE Alu -34 276 1 2285 106 3 0 chr13 83268503 83268805 -36476093 + AluSp SINE Alu 1 303 -10 1685 149 0 11 chr13 83270792 83271060 -36473838 + AluSx SINE Alu 45 309 -3 2133 125 0 16 chr13 83271062 83271373 -36473525 + AluSx SINE Alu 2 307 -5 2117 139 10 0 chr13 83271523 83271825 -36473073 - AluSx SINE Alu -5 307 3 2624 27 0 3 chr13 83271987 83272288 -36472610 + AluY SINE Alu 1 300 -11 343 319 124 12 chr13 83272313 83272482 -36472416 - MER5A DNA MER1_type 0 189 2 29 60 0 0 chr13 83273993 83274043 -36470855 + AT_rich Low_complexity Low_complexity 1 50 0 23 55 0 18 chr13 83278908 83278923 -36465975 + GC_rich Low_complexity Low_complexity 1 15 -39 180 0 0 0 chr13 83278923 83278943 -36465955 + (CCGGG)n Simple_repeat Simple_repeat 2 21 0 23 55 0 18 chr13 83278943 83278982 -36465916 + GC_rich Low_complexity Low_complexity 15 54 0 321 26 0 0 chr13 83279077 83279115 -36465783 + (GGA)n Simple_repeat Simple_repeat 1 38 0 26 93 0 0 chr13 83279362 83279437 -36465461 + GC_rich Low_complexity Low_complexity 1 75 0 257 226 16 0 chr13 83279700 83279762 -36465136 + G-rich Low_complexity Low_complexity 2 64 0 24 0 0 0 chr13 83280931 83280955 -36463943 + GC_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr13 83281836 83281861 -36463037 + (CA)n Simple_repeat Simple_repeat 2 26 0 2221 113 0 13 chr13 83281995 83282304 -36462594 - AluSq SINE Alu -8 305 1 186 43 0 0 chr13 83284180 83284203 -36460695 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1701 171 10 23 chr13 83284217 83284526 -36460372 - AluJb SINE Alu -7 305 1 2412 88 0 0 chr13 83284632 83284937 -36459961 + AluSp SINE Alu 1 305 -8 2039 128 3 29 chr13 83285114 83285420 -36459478 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 83285621 83285642 -36459256 + AT_rich Low_complexity Low_complexity 1 21 0 2178 127 10 0 chr13 83285890 83286197 -36458701 + AluSx SINE Alu 3 312 0 214 288 36 131 chr13 83286360 83286634 -36458264 + L2 LINE L2 2708 2955 -359 1056 194 9 26 chr13 83286689 83286921 -36457977 - AluJo SINE Alu -3 309 82 534 325 66 55 chr13 83286921 83287192 -36457706 + L2 LINE L2 2999 3272 0 2653 46 3 0 chr13 83287193 83287500 -36457398 + AluY SINE Alu 1 308 -3 287 116 0 15 chr13 83288276 83288326 -36456572 + Alu SINE Alu 1 38 -263 7599 55 15 0 chr13 83288574 83289867 -36455031 - L1PA8 LINE L1 -4 6168 4865 576 285 87 33 chr13 83290509 83290939 -36453959 - L1ME LINE L1 -394 5727 5273 1860 128 11 3 chr13 83291216 83291524 -36453374 + AluSx SINE Alu 1 310 0 253 250 86 26 chr13 83291525 83291641 -36453257 - L1ME LINE L1 -652 5469 5347 281 183 141 0 chr13 83291813 83291884 -36453014 + MER53 DNA DNA 3 83 -106 180 107 18 54 chr13 83291917 83291973 -36452925 + (TATTG)n Simple_repeat Simple_repeat 2 55 0 2430 80 7 0 chr13 83292134 83292436 -36452462 + AluSp SINE Alu 2 305 -8 347 279 27 18 chr13 83292643 83292754 -36452144 - MER5B DNA MER1_type -1 177 66 503 294 18 6 chr13 83292759 83292922 -36451976 + MIR SINE MIR 97 261 -1 432 224 112 0 chr13 83293013 83293111 -36451787 - MER63A DNA MER1_type -2 208 100 1052 157 0 0 chr13 83293112 83293265 -36451633 + AluSq SINE Alu 2 154 -159 4078 122 111 134 chr13 83293265 83294659 -36450239 + pTR5 LTR ERV1 747 2432 -6 1255 131 0 0 chr13 83294659 83294834 -36450064 + AluSg/x SINE Alu 136 310 0 270 299 72 0 chr13 83294839 83294936 -36449962 - MER63A DNA MER1_type 0 112 9 231 36 0 0 chr13 83295295 83295323 -36449575 + (TA)n Simple_repeat Simple_repeat 1 28 0 2395 57 0 0 chr13 83295571 83295879 -36449019 - AluY SINE Alu 0 308 1 2273 88 3 0 chr13 83296195 83296523 -36448375 - AluSp SINE Alu 0 329 1 186 43 0 0 chr13 83298137 83298160 -36446738 + (A)n Simple_repeat Simple_repeat 1 23 0 444 259 30 15 chr13 83300064 83300199 -36444699 + MIR3 SINE MIR 10 146 -62 1310 97 0 11 chr13 83300961 83301137 -36443761 - AluSp SINE Alu -3 310 137 255 333 0 0 chr13 83301549 83301648 -36443250 + (TA)n Simple_repeat Simple_repeat 2 100 0 1596 169 25 37 chr13 83303332 83303657 -36441241 - MER39 LTR ERV1 0 707 387 5175 117 41 68 chr13 83303661 83303967 -36440931 - MER4D LTR ERV1 0 903 590 1901 159 0 0 chr13 83303967 83304274 -36440624 + AluJb SINE Alu 1 307 0 5175 117 41 68 chr13 83304274 83304696 -36440202 - MER4D LTR ERV1 -313 590 201 2201 100 11 0 chr13 83304696 83305008 -36439890 - AluSx SINE Alu 0 315 1 5175 117 41 68 chr13 83305008 83305197 -36439701 - MER4D LTR ERV1 -702 201 8 846 170 212 26 chr13 83305203 83305459 -36439439 - MER39B LTR ERV1 -389 264 1 625 209 13 63 chr13 83305510 83305668 -36439230 - MER39B-int LTR ERV1 -144 6187 6038 1724 58 0 5 chr13 83306389 83306596 -36438302 - AluSp SINE Alu -7 306 101 440 115 35 0 chr13 83306708 83306821 -36438077 + (TA)n Simple_repeat Simple_repeat 2 118 0 837 197 0 7 chr13 83306989 83307141 -36437757 - AluSc SINE Alu -40 269 119 866 47 0 19 chr13 83307250 83307356 -36437542 - U6 snRNA snRNA -1 106 3 1191 52 0 0 chr13 83307357 83307493 -36437405 - AluSq/x SINE Alu -176 137 2 1960 114 6 54 chr13 83307493 83307808 -36437090 - AluSc SINE Alu -9 300 1 1658 178 0 10 chr13 83308206 83308498 -36436400 + AluJo SINE Alu 1 289 -23 331 150 363 0 chr13 83308515 83308595 -36436303 + MER33 DNA MER1_type 12 120 -204 1030 154 0 6 chr13 83308607 83308763 -36436135 + FRAM SINE Alu 11 165 -11 762 168 109 40 chr13 83308763 83308965 -36435933 + MER33 DNA MER1_type 147 362 -1 487 313 138 5 chr13 83310381 83310576 -36434322 - MIR SINE MIR -1 261 41 180 0 0 0 chr13 83310732 83310752 -36434146 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1543 178 3 51 chr13 83310781 83311095 -36433803 - AluJo SINE Alu -13 299 1 21 71 0 0 chr13 83311585 83311627 -36433271 + AT_rich Low_complexity Low_complexity 1 42 0 2260 100 3 0 chr13 83311747 83312038 -36432860 + AluSg SINE Alu 1 292 -18 1834 169 0 13 chr13 83313284 83313586 -36431312 - AluJb SINE Alu -14 298 1 1873 131 20 10 chr13 83314159 83314456 -36430442 + AluJb SINE Alu 1 300 -12 237 225 54 8 chr13 83314497 83314626 -36430272 + (TA)n Simple_repeat Simple_repeat 1 135 0 408 218 35 35 chr13 83314691 83314833 -36430065 + L1MC5 LINE L1 7784 7925 -36 252 56 0 0 chr13 83314835 83314861 -36430037 + (T)n Simple_repeat Simple_repeat 1 29 -7 2067 122 7 7 chr13 83314861 83315156 -36429742 + AluSx SINE Alu 1 295 -17 252 56 0 0 chr13 83315156 83315165 -36429733 + (T)n Simple_repeat Simple_repeat 28 36 0 368 277 78 65 chr13 83315293 83315408 -36429490 + L1ME LINE L1 5365 5477 -685 1608 158 3 96 chr13 83315408 83315597 -36429301 - AluJb SINE Alu -3 309 163 2520 30 0 10 chr13 83315597 83315893 -36429005 - AluY SINE Alu -18 293 1 1608 158 3 96 chr13 83315893 83316038 -36428860 - AluJb SINE Alu -149 163 6 368 277 78 65 chr13 83316038 83316243 -36428655 + L1ME LINE L1 5477 5689 -473 1930 241 74 60 chr13 83316375 83316706 -36428192 - MER21B LTR ERV1 -51 812 487 2376 153 37 9 chr13 83316706 83317136 -36427762 + MER65A LTR ERV1 3 444 -1 1930 241 74 60 chr13 83317136 83317564 -36427334 - MER21B LTR ERV1 -376 487 43 281 250 0 0 chr13 83317564 83317616 -36427282 - MER21B LTR ERV1 -771 92 41 320 237 32 11 chr13 83317635 83317728 -36427170 - MER21B LTR ERV1 -757 106 12 2250 92 7 3 chr13 83317915 83318210 -36426688 + AluSq SINE Alu 1 296 -17 1647 164 0 25 chr13 83318238 83318524 -36426374 - AluJo SINE Alu 0 312 34 1551 96 0 0 chr13 83319892 83320091 -36424807 - AluSx SINE Alu 0 310 112 874 83 0 0 chr13 83320146 83320254 -36424644 - AluSx SINE Alu -204 108 1 691 234 19 0 chr13 83320543 83320701 -36424197 - MER21-int LTR ERV1 -1763 2428 2268 28 48 0 0 chr13 83320960 83321002 -36423896 + AT_rich Low_complexity Low_complexity 1 42 0 1739 184 3 23 chr13 83321083 83321388 -36423510 + AluJb SINE Alu 1 299 -13 2421 59 0 26 chr13 83321438 83321741 -36423157 + AluY SINE Alu 1 295 -16 403 344 52 45 chr13 83321934 83322088 -36422810 + L2 LINE L2 3116 3270 -2 627 247 147 13 chr13 83322323 83322554 -36422344 - MIR SINE MIR 0 262 1 773 118 81 15 chr13 83323001 83323137 -36421761 - MLT1B LTR MaLR -4 386 242 453 136 0 12 chr13 83323118 83323199 -36421699 - MLT1B LTR MaLR -252 138 59 * 250 167 50 17 chr13 83323226 83323286 -36421612 - MLT1B LTR MaLR -306 84 23 357 263 119 17 chr13 83323391 83323509 -36421389 + MIR SINE MIR 22 151 -111 22 56 0 0 chr13 83325331 83325367 -36419531 + AT_rich Low_complexity Low_complexity 1 36 0 183 80 0 0 chr13 83325557 83325582 -36419316 + (CAT)n Simple_repeat Simple_repeat 2 26 0 345 266 11 133 chr13 83325830 83326018 -36418880 + MIR SINE MIR 47 211 -51 248 284 60 15 chr13 83326091 83326158 -36418740 + MIR SINE MIR 26 95 -167 1011 280 62 81 chr13 83327707 83328235 -36416663 + MLT1K LTR MaLR 24 541 -47 2904 224 34 112 chr13 83328248 83329070 -36415828 - L1ME LINE L1 -558 5608 4724 2323 89 0 0 chr13 83329070 83329361 -36415537 - AluSc SINE Alu -16 293 3 2904 224 34 112 chr13 83329361 83329869 -36415029 - L1ME LINE L1 -1442 4724 4503 2252 122 0 13 chr13 83329869 83330181 -36414717 + AluSx SINE Alu 1 308 -4 2904 224 34 112 chr13 83330181 83330863 -36414035 - L1ME LINE L1 -1663 4503 3769 2266 194 30 22 chr13 83330864 83331184 -36413714 + MLT1D LTR MaLR 1 328 -177 189 0 0 0 chr13 83331184 83331205 -36413693 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2266 194 30 22 chr13 83331205 83331385 -36413513 + MLT1D LTR MaLR 328 505 0 1835 250 59 64 chr13 83331386 83332401 -36412497 + MLT1D-int LTR MaLR 2 1124 -247 541 202 24 0 chr13 83332407 83332531 -36412367 + MLT1D LTR MaLR 379 505 0 351 276 16 31 chr13 83332557 83332684 -36412214 + MLT1D-int LTR MaLR 1150 1274 -97 1818 144 17 28 chr13 83332701 83333055 -36411843 - L1MA4A LINE L1 -5 6298 5949 437 244 30 0 chr13 83333058 83333189 -36411709 + MLT1D-int LTR MaLR 1237 1371 0 1660 212 67 43 chr13 83333189 83333680 -36411218 + MLT1D LTR MaLR 3 505 0 36 0 0 0 chr13 83333768 83333804 -36411094 + AT_rich Low_complexity Low_complexity 1 36 0 2541 54 3 0 chr13 83333809 83334104 -36410794 + AluY SINE Alu 1 296 -15 436 169 0 0 chr13 83334175 83334258 -36410640 - L1MB1 LINE L1 -1 6167 6085 3256 139 38 2 chr13 83334258 83334832 -36410066 - Tigger1 DNA MER2_type -1 2417 1823 566 186 0 10 chr13 83334845 83334942 -36409956 + FLAM_C SINE Alu 24 119 -24 314 105 0 18 chr13 83334955 83335012 -36409886 + (GGAGAA)n Simple_repeat Simple_repeat 5 60 0 2572 107 8 0 chr13 83335026 83335396 -36409502 - Tigger1 DNA MER2_type -644 1774 1402 3097 88 16 2 chr13 83335396 83335827 -36409071 + LTR3b LTR ERVK 1 437 0 697 210 100 10 chr13 83335938 83336138 -36408760 + HERVK3 LTR ERVK 55 272 -6971 405 250 0 29 chr13 83336195 83336299 -36408599 + HERVK3 LTR ERVK 580 680 -6563 * 5095 173 22 8 chr13 83336297 83337258 -36407640 + HERVK3 LTR ERVK 1336 2309 -4934 1821 142 55 66 chr13 83337257 83337707 -36407191 + HERVK3 LTR ERVK 2995 5557 -388 * 325 169 0 0 chr13 83337703 83337762 -36407136 + HERVK3 LTR ERVK 5826 5884 -61 * 2916 88 35 0 chr13 83337776 83338198 -36406700 + LTR3b LTR ERVK 1 437 0 * 6203 147 36 14 chr13 83338198 83339313 -36405585 - Tigger1 DNA MER2_type -999 1419 280 25 31 0 0 chr13 83339319 83339351 -36405547 + AT_rich Low_complexity Low_complexity 1 32 0 16625 164 32 12 chr13 83339351 83343220 -36401678 - L1PA14 LINE L1 -3 7596 3192 2393 106 0 0 chr13 83343220 83343523 -36401375 - AluSq SINE Alu -10 303 1 16625 164 32 12 chr13 83343523 83346679 -36398219 - L1PA14 LINE L1 -4407 3192 101 1241 175 13 4 chr13 83346702 83346936 -36397962 - Tigger1 DNA MER2_type -2127 291 56 21 71 0 0 chr13 83346970 83347012 -36397886 + AT_rich Low_complexity Low_complexity 1 42 0 279 275 47 13 chr13 83347123 83347272 -36397626 - L1ME4a LINE L1 0 6121 5968 2053 121 10 23 chr13 83347277 83347583 -36397315 - AluSx SINE Alu -10 302 1 3270 233 60 29 chr13 83347642 83349594 -36395304 - L1MD1 LINE L1 0 6660 4647 1693 216 0 3 chr13 83349594 83349900 -36394998 - AluJb SINE Alu -7 305 1 3270 233 60 29 chr13 83349900 83349980 -36394918 - L1MD1 LINE L1 -2013 4647 4571 419 214 10 10 chr13 83349978 83350076 -36394822 - L1MD1 LINE L1 -134 6108 6011 * 396 253 20 79 chr13 83350365 83350657 -36394241 - L1MD1 LINE L1 -2130 4434 4160 572 178 144 17 chr13 83350744 83350862 -36394036 - FLAM_C SINE Alu 0 133 1 3156 254 54 32 chr13 83350864 83352023 -36392875 - L1MD1 LINE L1 -2391 4173 2965 2755 141 17 51 chr13 83352023 83352556 -36392342 + L1PA15 LINE L1 5651 6165 0 3156 254 54 32 chr13 83352556 83352966 -36391932 - L1MD1 LINE L1 -3599 2965 2566 788 226 61 48 chr13 83352963 83353016 -36391882 - L1MD1 LINE L1 -3998 2747 2696 * 439 39 13 64 chr13 83353016 83353094 -36391804 - L1PA16 LINE L1 -1 6165 6092 788 226 61 48 chr13 83353094 83353434 -36391464 - L1MD1 LINE L1 -4049 2696 2349 3467 223 40 58 chr13 83353438 83355223 -36389675 - L1MD1 LINE L1 -4796 1768 3 1251 278 112 56 chr13 83355249 83356693 -36388205 - L1MEc LINE L1 -4764 1632 109 622 189 0 14 chr13 83357771 83357914 -36386984 + CT-rich Low_complexity Low_complexity 1 141 0 399 230 24 35 chr13 83358065 83358392 -36386506 + CT-rich Low_complexity Low_complexity 1 323 0 535 311 133 29 chr13 83358688 83359070 -36385828 + MLT1H LTR MaLR 119 540 -9 2554 116 62 5 chr13 83359779 83360184 -36384714 - MSTA LTR MaLR 0 428 1 2426 198 50 0 chr13 83360184 83360689 -36384209 - MSTA-int LTR MaLR 0 1651 1122 1648 176 18 39 chr13 83360689 83360845 -36384053 - THE1C LTR MaLR 0 375 217 2296 86 0 49 chr13 83360845 83361170 -36383728 - AluY SINE Alu 0 311 3 2884 73 8 10 chr13 83361172 83361569 -36383329 - L1PA8 LINE L1 -4 6168 5773 1648 176 18 39 chr13 83361569 83361790 -36383108 - THE1C LTR MaLR -159 216 3 5734 179 35 14 chr13 83361792 83362895 -36382003 - MSTA-int LTR MaLR -525 1126 2 2082 133 118 8 chr13 83362902 83363284 -36381614 - MSTA LTR MaLR -4 424 1 1446 173 30 7 chr13 83363284 83363555 -36381343 - MSTB LTR MaLR -149 277 1 291 306 0 0 chr13 83363689 83363774 -36381124 - MLT1I LTR MaLR -219 190 106 25 0 0 0 chr13 83364928 83364953 -36379945 + AT_rich Low_complexity Low_complexity 1 25 0 1193 245 98 41 chr13 83366175 83366683 -36378215 + MER39 LTR ERV1 1 707 0 1258 191 16 41 chr13 83366853 83367099 -36377799 + AluJo SINE Alu 7 246 -66 454 194 39 0 chr13 83367208 83367311 -36377587 + MER39 LTR ERV1 601 707 0 1936 158 13 0 chr13 83367856 83368154 -36376744 - AluJb SINE Alu -10 302 1 824 132 0 8 chr13 83368406 83368527 -36376371 - FLAM_C SINE Alu -13 120 1 1445 207 13 30 chr13 83369007 83369312 -36375586 - AluJo SINE Alu -12 300 1 2425 208 78 46 chr13 83369386 83369624 -36375274 - MER50 LTR ERV1 0 734 505 2505 45 0 3 chr13 83369624 83369914 -36374984 - AluY SINE Alu -22 289 1 2425 208 78 46 chr13 83369914 83370377 -36374521 - MER50 LTR ERV1 -229 505 10 1311 202 29 70 chr13 83370460 83370917 -36373981 + MER34C LTR ERV1 157 565 0 1519 217 99 70 chr13 83370971 83371645 -36373253 + LTR48 LTR ERV1 1 578 -17 482 169 22 0 chr13 83371798 83371887 -36373011 - MIR SINE MIR -88 174 84 286 130 0 0 chr13 83372099 83372145 -36372753 - MER34 LTR ERV1 -50 492 447 * 1377 172 130 101 chr13 83372114 83372543 -36372355 - MER34C LTR ERV1 -64 521 73 2498 60 9 18 chr13 83372543 83372877 -36372021 - L1PA7 LINE L1 -4 6150 5820 1377 172 130 101 chr13 83372877 83372953 -36371945 - MER34C LTR ERV1 -512 73 1 4134 119 2 8 chr13 83373102 83373716 -36371182 + MER4B LTR ERV1 1 610 0 263 311 110 68 chr13 83375568 83375996 -36368902 - MLT1K LTR MaLR -2 586 141 757 239 62 0 chr13 83376495 83376671 -36368227 - MER58A DNA MER1_type 0 224 38 2340 98 0 3 chr13 83376803 83377109 -36367789 + AluY SINE Alu 1 305 -6 464 222 0 98 chr13 83377666 83377819 -36367079 + HsTC2 DNA Tc2 2 139 -1759 1390 244 62 23 chr13 83377825 83378296 -36366602 + HsTC2 DNA Tc2 1233 1897 -1 24 32 0 0 chr13 83378300 83378331 -36366567 + AT_rich Low_complexity Low_complexity 1 31 0 10563 175 43 7 chr13 83378586 83381189 -36363709 - L1M1 LINE L1 -566 5737 3067 223 200 15 15 chr13 83381424 83381489 -36363409 + CT-rich Low_complexity Low_complexity 2 66 0 217 214 0 0 chr13 83381495 83381537 -36363361 + (CA)n Simple_repeat Simple_repeat 1 42 0 284 273 16 47 chr13 83383341 83383469 -36361429 + L2 LINE L2 3179 3302 -11 1624 158 23 15 chr13 83383472 83383738 -36361160 + AluJo SINE Alu 14 281 -31 23 33 0 0 chr13 83383771 83383801 -36361097 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr13 83383875 83383917 -36360981 + AT_rich Low_complexity Low_complexity 1 42 0 225 0 0 0 chr13 83384072 83384097 -36360801 + (TA)n Simple_repeat Simple_repeat 1 25 0 2145 124 17 0 chr13 83384222 83384520 -36360378 - AluSx SINE Alu -8 304 2 21 36 0 0 chr13 83384614 83384642 -36360256 + AT_rich Low_complexity Low_complexity 1 28 0 569 187 24 72 chr13 83385102 83385268 -36359630 + L1MD2 LINE L1 6173 6330 -29 2194 111 0 3 chr13 83387072 83387369 -36357529 - AluSg SINE Alu -14 296 1 242 342 112 39 chr13 83387987 83388344 -36356554 + L2 LINE L2 1669 2065 -1249 2254 171 31 21 chr13 83388344 83388766 -36356132 - MSTC LTR MaLR 0 428 3 242 342 112 39 chr13 83388766 83388844 -36356054 + L2 LINE L2 2065 2136 -1178 2203 262 78 88 chr13 83389525 83390815 -36354083 + L1MA5 LINE L1 1 1277 -5932 11480 161 37 44 chr13 83390825 83392377 -36352521 + L1MA5 LINE L1 3737 5298 -2064 5051 87 26 12 chr13 83392377 83393110 -36351788 + L1PA12 LINE L1 5411 6153 -15 11480 161 37 44 chr13 83393110 83393224 -36351674 + L1MA5 LINE L1 5298 5411 -1951 2103 122 0 3 chr13 83393224 83393519 -36351379 + AluSx SINE Alu 1 294 -18 11480 161 37 44 chr13 83393519 83394224 -36350674 + L1MA5 LINE L1 5411 6119 -1243 1527 192 35 45 chr13 83394224 83394511 -36350387 + AluJo SINE Alu 1 284 -28 11480 161 37 44 chr13 83394511 83394595 -36350303 + L1MA5 LINE L1 6119 6202 -1160 2294 94 20 0 chr13 83394595 83394893 -36350005 + AluSq SINE Alu 1 304 -9 11480 161 37 44 chr13 83394893 83395570 -36349328 + L1MA5 LINE L1 6202 6845 -517 216 0 0 0 chr13 83395570 83395594 -36349304 + (TA)n Simple_repeat Simple_repeat 2 25 0 11480 161 37 44 chr13 83395594 83396109 -36348789 + L1MA5 LINE L1 6845 7362 0 262 354 41 7 chr13 83397089 83397236 -36347662 - LTR67 LTR ERVL 0 557 406 300 328 211 34 chr13 83397695 83398113 -36346785 - L2 LINE L2 -648 2666 2175 664 316 14 34 chr13 83398133 83398424 -36346474 + L2 LINE L2 525 809 -2505 247 323 59 75 chr13 83398741 83398797 -36346101 + L2 LINE L2 1584 1639 -1675 2144 112 33 0 chr13 83398797 83399100 -36345798 - AluSp SINE Alu 0 313 1 247 323 59 75 chr13 83399100 83399229 -36345669 + L2 LINE L2 1639 1766 -1548 4008 141 10 2 chr13 83399249 83399866 -36345032 + MER39B LTR ERV1 4 625 -28 584 316 116 13 chr13 83399872 83400173 -36344725 + L2 LINE L2 1757 2088 -1226 2056 284 74 33 chr13 83400353 83401451 -36343447 - L2 LINE L2 0 3313 2157 432 333 34 71 chr13 83403827 83404124 -36340774 - LTR67 LTR ERVL -269 288 3 928 168 0 71 chr13 83404219 83404381 -36340517 + L1PB4 LINE L1 5969 6116 -40 7084 70 9 2 chr13 83404381 83406095 -36338803 + L1PA6 LINE L1 4434 6152 -2 928 168 0 71 chr13 83406095 83406128 -36338770 + L1PB4 LINE L1 6116 6150 -6 483 321 90 53 chr13 83406651 83407103 -36337795 + L2 LINE L2 2651 3135 -137 533 125 0 0 chr13 83407103 83407183 -36337715 - MADE1 DNA Mariner 0 80 1 483 321 90 53 chr13 83407183 83407327 -36337571 + L2 LINE L2 3135 3272 0 558 155 0 0 chr13 83408397 83408513 -36336385 + CT-rich Low_complexity Low_complexity 3 118 0 501 230 107 48 chr13 83408864 83409051 -36335847 - MIR SINE MIR 0 262 65 2299 94 0 3 chr13 83410170 83410468 -36334430 + AluSc SINE Alu 1 297 -12 256 320 48 24 chr13 83410980 83411105 -36333793 - MLT1K LTR MaLR -260 328 201 248 230 363 0 chr13 83412245 83412358 -36332540 + MER5A DNA MER1_type 7 160 -29 709 158 0 0 chr13 83412422 83412536 -36332362 + AluJo/FLAM SINE Alu 2 115 -197 1012 101 0 0 chr13 83412536 83412665 -36332233 + AluSg/x SINE Alu 170 298 -14 549 216 0 0 chr13 83414756 83414853 -36330045 - MER46A DNA MER2_type -139 97 1 216 97 0 0 chr13 83415054 83415085 -36329813 + (TG)n Simple_repeat Simple_repeat 1 31 0 237 65 0 0 chr13 83416396 83416427 -36328471 + (TA)n Simple_repeat Simple_repeat 2 32 0 227 174 0 0 chr13 83416431 83416477 -36328421 + LTR66 LTR ERVL 394 439 -171 351 203 0 0 chr13 83416477 83416551 -36328347 + (TA)n Simple_repeat Simple_repeat 2 75 0 230 238 71 0 chr13 83416551 83416635 -36328263 + L1MC4 LINE L1 6614 6703 -1339 * 236 233 22 22 chr13 83416609 83416699 -36328199 - L1MC4 LINE L1 -1339 6703 6614 230 292 0 31 chr13 83416719 83416784 -36328114 - L2 LINE L2 -7 3265 3203 907 181 39 6 chr13 83417068 83417250 -36327648 + MER5A DNA MER1_type 1 188 -1 422 227 55 0 chr13 83417264 83417374 -36327524 - MER5B DNA MER1_type -4 174 68 288 303 82 41 chr13 83417355 83417477 -36327421 - MIR3 SINE MIR -76 132 6 * 2086 113 10 7 chr13 83417586 83417877 -36327021 + AluSx SINE Alu 2 293 -19 4390 128 35 10 chr13 83418217 83418941 -36325957 - L1MC1 LINE L1 0 6333 5592 281 353 128 5 chr13 83419035 83419222 -36325676 - MIR SINE MIR -43 219 10 216 0 0 0 chr13 83419537 83419561 -36325337 + (T)n Simple_repeat Simple_repeat 1 24 0 622 278 40 17 chr13 83421508 83421681 -36323217 + MIR SINE MIR 20 196 -66 1362 274 102 59 chr13 83421754 83422665 -36322233 - HAL1 LINE L1 -1 2506 1557 1954 303 117 62 chr13 83423186 83424988 -36319910 + ERVL LTR ERVL 1784 3648 -1837 1066 330 74 17 chr13 83425159 83425801 -36319097 + ERVL LTR ERVL 3938 4575 -910 277 328 32 43 chr13 83426257 83426443 -36318455 + ERVL LTR ERVL 5182 5365 -399 477 323 20 5 chr13 83427108 83427303 -36317595 + LTR67 LTR ERVL 352 549 -8 4263 123 101 99 chr13 83427670 83429051 -36315847 - pTR5 LTR ERV1 0 2438 743 3139 180 17 12 chr13 83429570 83430231 -36314667 - L1MA7 LINE L1 -10 6281 5618 2524 214 33 25 chr13 83430290 83430920 -36313978 - L1MD3 LINE L1 -6 7989 7355 23 33 0 0 chr13 83431008 83431038 -36313860 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 83431133 83431154 -36313744 + AT_rich Low_complexity Low_complexity 1 21 0 2098 130 10 0 chr13 83431220 83431512 -36313386 - AluSx SINE Alu -17 295 1 2375 187 12 2 chr13 83432256 83432679 -36312219 + MSTB1 LTR MaLR 1 427 -5 526 312 54 46 chr13 83435041 83435400 -36309498 - MLT1H LTR MaLR -52 497 73 21 0 0 0 chr13 83435692 83435713 -36309185 + AT_rich Low_complexity Low_complexity 1 21 0 262 260 52 13 chr13 83435820 83435897 -36309001 - L2 LINE L2 0 3313 3234 259 240 13 13 chr13 83436354 83436429 -36308469 + MLT1K LTR MaLR 511 585 -3 321 26 0 0 chr13 83436538 83436576 -36308322 + (ATG)n Simple_repeat Simple_repeat 2 39 0 478 282 51 64 chr13 83436620 83436854 -36308044 - MIR SINE MIR 0 262 32 1274 132 22 22 chr13 83439441 83439668 -36305230 + L1PA15 LINE L1 5939 6165 0 205 231 31 15 chr13 83440180 83440245 -36304653 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 215 346 39 15 chr13 83440334 83440425 -36304473 + MIR SINE MIR 9 100 -108 1270 255 38 83 chr13 83440425 83441005 -36303893 + MLT2B1 LTR ERVL 1 552 -2 7264 194 38 9 chr13 83443033 83445444 -36299454 - L1PA16 LINE L1 -27 6139 3664 242 344 53 15 chr13 83445444 83445575 -36299323 + MIR SINE MIR 127 262 0 491 31 15 0 chr13 83445668 83445733 -36299165 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 200 310 257 0 chr13 83446383 83446496 -36298402 - L2 LINE L2 -560 2754 2613 182 128 26 0 chr13 83448478 83448517 -36296381 + (TG)n Simple_repeat Simple_repeat 1 40 0 2328 150 0 3 chr13 83449008 83449382 -36295516 - MER41B LTR ERV1 -88 547 175 1827 152 0 37 chr13 83449485 83449821 -36295077 - AluSx SINE Alu 0 325 1 549 342 109 53 chr13 83450571 83451345 -36293553 + L2 LINE L2 2459 3256 -16 1669 181 89 66 chr13 83504243 83504725 -36240173 + MER50 LTR ERV1 240 732 -2 545 172 1 4 chr13 83505249 83505364 -36239534 - L1MA9 LINE L1 -4 6287 6176 4309 190 17 6 chr13 83505367 83506284 -36238614 - L1MA9 LINE L1 -232 6080 5142 3329 115 18 2 chr13 83506284 83506787 -36238111 + MER75 DNA T2_type 3 513 -1 4309 190 17 6 chr13 83506787 83507383 -36237515 - L1MA9 LINE L1 -1170 5142 4554 255 319 113 7 chr13 83508010 83508151 -36236747 + MIR SINE MIR 6 161 -101 235 270 32 0 chr13 83508457 83508520 -36236378 - MLT1J LTR MaLR -372 139 75 242 171 0 0 chr13 83508575 83508616 -36236282 + MIR SINE MIR 160 200 -62 350 323 83 47 chr13 83509258 83509331 -36235567 - L1M4 LINE L1 -2867 3279 3210 1639 186 14 10 chr13 83509331 83509627 -36235271 - AluJo SINE Alu -15 297 1 350 323 83 47 chr13 83509627 83509937 -36234961 - L1M4 LINE L1 -2936 3210 2882 195 173 0 0 chr13 83509948 83510000 -36234898 + (TG)n Simple_repeat Simple_repeat 2 53 0 204 67 0 0 chr13 83510103 83510133 -36234765 + (T)n Simple_repeat Simple_repeat 1 30 0 1055 157 9 32 chr13 83510515 83510731 -36234167 - L1PA13 LINE L1 -2 6161 5951 275 320 122 6 chr13 83510733 83510889 -36234009 + MLT1H1 LTR MaLR 49 222 -333 610 241 41 53 chr13 83510976 83511146 -36233752 + MLT1G1 LTR MaLR 427 594 -1 411 21 0 0 chr13 83511206 83511254 -36233644 + (TG)n Simple_repeat Simple_repeat 1 48 0 937 186 59 65 chr13 83512896 83513218 -36231680 - MER33 DNA MER1_type 0 324 5 7660 85 31 4 chr13 83513395 83515287 -36229611 - L1PA7 LINE L1 0 6469 4548 5041 38 2 0 chr13 83515287 83515891 -36229007 - L1PA4 LINE L1 0 6155 5545 15471 100 4 2 chr13 83515891 83518709 -36226189 - L1PA7 LINE L1 -1898 4563 1746 1240 86 23 0 chr13 83518701 83518875 -36226023 - L1PA7 LINE L1 -5354 1107 930 * 266 299 178 54 chr13 83521138 83521716 -36223182 - L2 LINE L2 -1074 2240 1591 2537 277 120 42 chr13 83522263 83522481 -36222417 - HAL1 LINE L1 -42 2465 2265 1728 158 24 20 chr13 83522481 83522779 -36222119 - AluSq SINE Alu -14 299 1 2537 277 120 42 chr13 83522779 83524331 -36220567 - HAL1 LINE L1 -242 2265 557 762 308 86 34 chr13 83524348 83524813 -36220085 - HAL1 LINE L1 -1992 515 27 22 56 0 0 chr13 83524923 83524959 -36219939 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr13 83525793 83525814 -36219084 + (CA)n Simple_repeat Simple_repeat 2 22 0 632 200 23 6 chr13 83528528 83528703 -36216195 + GA-rich Low_complexity Low_complexity 2 179 0 226 293 0 40 chr13 83532494 83532569 -36212329 + MLT1K LTR MaLR 165 236 -352 219 146 0 0 chr13 83532686 83532727 -36212171 + (GA)n Simple_repeat Simple_repeat 2 42 0 1982 141 3 0 chr13 83533759 83534056 -36210842 - AluSx SINE Alu -14 298 1 21 57 0 0 chr13 83534511 83534546 -36210352 + AT_rich Low_complexity Low_complexity 1 35 0 2507 46 3 7 chr13 83534878 83535185 -36209713 - AluY SINE Alu -5 306 1 334 336 38 29 chr13 83535261 83535499 -36209399 - L2 LINE L2 -831 2483 2244 2429 63 0 38 chr13 83535612 83535929 -36208969 + AluY SINE Alu 1 305 -6 1294 193 59 31 chr13 83537471 83537778 -36207120 + MLT1A2 LTR MaLR 1 331 -65 334 298 125 18 chr13 83540260 83540443 -36204455 + MIR SINE MIR 16 213 -49 484 273 222 37 chr13 83540619 83540835 -36204063 + MIR SINE MIR 6 261 -1 2378 87 3 19 chr13 83541587 83541897 -36203001 - AluY SINE Alu -4 307 3 2249 114 0 0 chr13 83541966 83542263 -36202635 - AluSq SINE Alu -16 297 1 422 281 165 60 chr13 83542518 83542852 -36202046 + MLT1J2 LTR MaLR 72 440 -10 24 53 0 0 chr13 83543013 83543051 -36201847 + AT_rich Low_complexity Low_complexity 1 38 0 1087 314 91 7 chr13 83543264 83543704 -36201194 - LTR16C LTR ERVL -5 486 10 259 195 12 85 chr13 83544481 83544563 -36200335 - MLT1K LTR MaLR -2 586 511 261 336 28 9 chr13 83544821 83544928 -36199970 - MLT1K LTR MaLR -290 298 190 1202 123 12 0 chr13 83545857 83546028 -36198870 - AluSg/x SINE Alu -6 306 134 413 127 28 0 chr13 83546028 83546099 -36198799 - AluJ/FLAM SINE Alu -238 74 2 1024 285 72 17 chr13 83547314 83547717 -36197181 - MLT2F LTR ERVL -2 661 237 742 295 19 56 chr13 83547724 83548043 -36196855 - MLT2F LTR ERVL -345 318 12 1702 119 0 8 chr13 83550393 83550637 -36194261 - THE1C LTR MaLR 0 375 134 24 0 0 0 chr13 83551268 83551292 -36193606 + AT_rich Low_complexity Low_complexity 1 24 0 239 154 58 0 chr13 83551679 83551731 -36193167 - MIR SINE MIR -108 154 100 12019 188 82 10 chr13 83553413 83554191 -36190707 + L1PB1 LINE L1 104 825 -6037 180 0 0 0 chr13 83554191 83554211 -36190687 + (CAG)n Simple_repeat Simple_repeat 1 20 0 12019 188 82 10 chr13 83554211 83558473 -36186425 + L1PB1 LINE L1 825 5511 -1351 3470 105 10 41 chr13 83558476 83559156 -36185742 + L1PB1 LINE L1 5832 6498 -369 317 120 40 51 chr13 83559165 83559340 -36185558 + (TA)n Simple_repeat Simple_repeat 1 173 0 237 154 39 39 chr13 83559343 83559421 -36185477 + (TTATA)n Simple_repeat Simple_repeat 4 81 0 272 115 83 19 chr13 83559426 83559583 -36185315 + (TA)n Simple_repeat Simple_repeat 2 168 0 2188 139 19 3 chr13 83559583 83559943 -36184955 + L1PB1 LINE L1 6498 6863 -4 22 56 0 0 chr13 83560156 83560192 -36184706 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr13 83560279 83560310 -36184588 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr13 83561422 83561461 -36183437 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr13 83561551 83561581 -36183317 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 83561607 83561637 -36183261 + AT_rich Low_complexity Low_complexity 1 30 0 2036 113 7 7 chr13 83562063 83562354 -36182544 - AluSg SINE Alu -19 291 1 729 314 146 7 chr13 83563233 83563670 -36181228 - L2 LINE L2 -37 3276 2784 496 262 89 84 chr13 83563881 83564106 -36180792 - L2 LINE L2 -523 2791 2566 1634 160 32 13 chr13 83564113 83564479 -36180419 + MLT2A2 LTR ERVL 19 453 0 574 141 84 14 chr13 83564890 83565032 -36179866 + L1MA5 LINE L1 6144 6295 -5 635 291 65 28 chr13 83565053 83565214 -36179684 - L1MEc LINE L1 -4771 1625 1471 2181 141 47 8 chr13 83565214 83565575 -36179323 - THE1C LTR MaLR 0 375 1 635 291 65 28 chr13 83565575 83565842 -36179056 - L1MEc LINE L1 -4925 1471 1181 1252 287 109 35 chr13 83565892 83566586 -36178312 - L2 LINE L2 -786 2528 1783 1903 223 99 9 chr13 83566593 83567056 -36177842 - MLT1D LTR MaLR 0 505 1 234 227 13 13 chr13 83568758 83568833 -36176065 + (TA)n Simple_repeat Simple_repeat 2 76 0 620 291 79 33 chr13 83569005 83569246 -36175652 - MIR SINE MIR -3 259 8 23 33 0 0 chr13 83569424 83569454 -36175444 + AT_rich Low_complexity Low_complexity 1 30 0 246 347 41 10 chr13 83569493 83569591 -36175307 - MIR SINE MIR -68 140 40 234 233 93 0 chr13 83570028 83570114 -36174784 - LTR68 LTR ERV1 -640 100 7 240 122 0 0 chr13 83570588 83570629 -36174269 + (TG)n Simple_repeat Simple_repeat 2 42 0 950 177 0 11 chr13 83571032 83571213 -36173685 - L1PB1 LINE L1 -3 6148 5970 25 31 0 0 chr13 83571519 83571551 -36173347 + AT_rich Low_complexity Low_complexity 1 32 0 528 293 58 40 chr13 83571592 83571817 -36173081 + MIR SINE MIR 34 262 0 29 0 0 0 chr13 83573446 83573475 -36171423 + AT_rich Low_complexity Low_complexity 1 29 0 380 364 168 24 chr13 83573768 83574748 -36170150 - L2 LINE L2 -1 3271 2149 375 60 0 0 chr13 83575146 83575196 -36169702 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 1551 205 0 20 chr13 83577050 83577352 -36167546 - AluJb SINE Alu -15 297 2 22 35 0 0 chr13 83578414 83578443 -36166455 + AT_rich Low_complexity Low_complexity 1 29 0 304 311 221 25 chr13 83579048 83579283 -36165615 - L3 LINE CR1 -394 1183 903 24 0 0 0 chr13 83581498 83581522 -36163376 + AT_rich Low_complexity Low_complexity 1 24 0 1036 113 33 0 chr13 83582683 83582834 -36162064 - AluSq SINE Alu -19 294 139 245 75 25 0 chr13 83583821 83583861 -36161037 + (TC)n Simple_repeat Simple_repeat 1 41 0 2006 59 47 0 chr13 83583983 83584237 -36160661 - AluY SINE Alu -11 300 35 358 271 176 56 chr13 83584774 83584931 -36159967 + HAL1b LINE L1 314 451 -897 2252 94 3 0 chr13 83584931 83585229 -36159669 + AluSx SINE Alu 1 299 -13 358 271 176 56 chr13 83585229 83585355 -36159543 + HAL1b LINE L1 451 631 -717 430 120 53 0 chr13 83585710 83585785 -36159113 + L1MA5A LINE L1 6019 6097 -200 237 315 47 8 chr13 83585912 83586039 -36158859 + HAL1b LINE L1 580 711 -637 355 293 32 52 chr13 83586049 83586298 -36158600 + L1M4 LINE L1 2684 2927 -3219 323 333 148 24 chr13 83587254 83587545 -36157353 + MLT1J2 LTR MaLR 3 329 -121 21 0 0 0 chr13 83587580 83587601 -36157297 + AT_rich Low_complexity Low_complexity 1 21 0 365 271 45 13 chr13 83587745 83587900 -36156998 - L1ME LINE L1 -440 5681 5522 784 390 80 11 chr13 83588581 83589132 -36155766 + L3 LINE CR1 984 1572 -5 409 133 13 0 chr13 83589645 83589720 -36155178 + L1MA3 LINE L1 6230 6305 0 187 298 81 103 chr13 83590625 83590859 -36154039 - L3 LINE CR1 -248 1329 1100 1964 127 4 0 chr13 83590859 83591135 -36153763 - AluSx SINE Alu -21 291 15 187 298 81 103 chr13 83591135 83591172 -36153726 - L3 LINE CR1 -477 1100 1064 200 319 26 35 chr13 83591224 83591340 -36153558 - L2 LINE L2 -432 2882 2768 499 293 53 14 chr13 83591413 83591621 -36153277 - L1ME3 LINE L1 -13 6149 5934 580 348 71 3 chr13 83591727 83592037 -36152861 - L3 LINE CR1 -980 597 267 1521 123 71 52 chr13 83592184 83592509 -36152389 - L1MA8 LINE L1 -5 6286 5956 616 146 82 0 chr13 83592525 83592635 -36152263 - L1PA15 LINE L1 -9 6156 6038 300 145 0 48 chr13 83592635 83592688 -36152210 + MSTB1 LTR MaLR 267 318 -114 300 27 0 0 chr13 83593591 83593628 -36151270 + (TG)n Simple_repeat Simple_repeat 2 38 0 1920 96 0 96 chr13 83593693 83594017 -36150881 + AluY SINE Alu 1 293 -18 228 362 57 23 chr13 83594187 83594319 -36150579 - L2 LINE L2 -2515 799 658 2177 162 33 26 chr13 83594319 83594746 -36150152 + MSTB1 LTR MaLR 3 432 0 228 362 57 23 chr13 83594746 83594790 -36150108 - L2 LINE L2 -2656 658 617 415 303 129 0 chr13 83596438 83596616 -36148282 + MIR SINE MIR 62 262 0 210 171 0 0 chr13 83596692 83596733 -36148165 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 36 40 0 0 chr13 83597107 83597157 -36147741 + AT_rich Low_complexity Low_complexity 1 50 0 1855 131 0 0 chr13 83597713 83597981 -36146917 + AluSx SINE Alu 35 302 -10 279 256 94 77 chr13 83598106 83598223 -36146675 - L2 LINE L2 0 3313 3195 22 35 0 0 chr13 83598264 83598293 -36146605 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 83598428 83598458 -36146440 + AT_rich Low_complexity Low_complexity 1 30 0 2279 48 48 17 chr13 83598802 83599097 -36145801 - AluY SINE Alu -7 304 1 2052 103 0 7 chr13 83599798 83600120 -36144778 + AluSc SINE Alu 1 320 0 4078 159 9 35 chr13 83600336 83601110 -36143788 - L1MB1 LINE L1 -16 6173 5420 210 327 0 35 chr13 83601132 83601245 -36143653 + CT-rich Low_complexity Low_complexity 1 109 0 244 279 85 63 chr13 83602068 83602527 -36142371 - L1M4 LINE L1 -2818 3328 2860 194 0 39 0 chr13 83603378 83603404 -36141494 + (TC)n Simple_repeat Simple_repeat 2 28 0 294 143 0 0 chr13 83603404 83603453 -36141445 + (TG)n Simple_repeat Simple_repeat 1 49 0 495 0 0 0 chr13 83603778 83603833 -36141065 + (TC)n Simple_repeat Simple_repeat 2 56 0 201 263 66 13 chr13 83604331 83604407 -36140491 + MIR SINE MIR 47 126 -136 395 292 188 13 chr13 83604427 83604581 -36140317 - MER5A DNA MER1_type 0 189 9 1987 124 58 28 chr13 83604769 83605133 -36139765 + THE1C LTR MaLR 1 375 0 339 85 0 0 chr13 83606055 83606102 -36138796 + (TG)n Simple_repeat Simple_repeat 1 47 0 200 241 52 35 chr13 83607283 83607341 -36137557 + L2 LINE L2 3214 3272 0 664 173 0 43 chr13 83608042 83608181 -36136717 - FLAM_C SINE Alu 0 133 1 536 291 39 64 chr13 83608280 83608514 -36136384 + L2 LINE L2 3085 3312 -1 281 48 24 0 chr13 83611096 83611138 -36133760 - L1MA3 LINE L1 0 6305 6263 6682 125 15 6 chr13 83611209 83612415 -36132483 - L1MA3 LINE L1 0 7724 6505 3898 153 66 40 chr13 83612409 83613135 -36131763 - L1MA3 LINE L1 -5722 1843 1099 * 612 140 35 9 chr13 83613132 83613246 -36131652 - L1MA3 LINE L1 -7432 133 17 * 363 315 33 39 chr13 83613712 83613893 -36131005 - L1ME3A LINE L1 -1 6169 5990 600 251 96 58 chr13 83614005 83614348 -36130550 - L1MC5 LINE L1 -442 7519 7164 300 308 104 38 chr13 83614582 83614822 -36130076 - HAL1b LINE L1 -701 647 392 1215 260 65 14 chr13 83614873 83615369 -36129529 - L1M4 LINE L1 -1529 4617 4097 * 4265 172 33 7 chr13 83615362 83616902 -36127996 + L1PA16 LINE L1 4360 5936 -230 2403 256 103 24 chr13 83616896 83617997 -36126901 - L1M4 LINE L1 -2315 3831 2644 * 404 239 125 23 chr13 83618002 83618178 -36126720 - L1M4 LINE L1 -3551 2595 2402 417 335 66 13 chr13 83618396 83618548 -36126350 - MER91A DNA MER1_type -26 170 11 232 279 0 0 chr13 83619289 83619357 -36125541 + L1MC4 LINE L1 7781 7848 -194 425 348 89 5 chr13 83619762 83620126 -36124772 - ERVL LTR ERVL -506 4979 4574 1729 309 55 23 chr13 83620207 83620946 -36123952 - ERVL LTR ERVL -1294 4470 3708 755 312 30 13 chr13 83620976 83621210 -36123688 - ERVL LTR ERVL -2133 3631 3394 5271 189 45 4 chr13 83621370 83622410 -36122488 - L1MA4A LINE L1 -23 6280 5285 234 0 0 0 chr13 83622410 83622436 -36122462 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5271 189 45 4 chr13 83622436 83623449 -36121449 - L1MA4A LINE L1 -1018 5285 4083 509 203 16 8 chr13 83623642 83623765 -36121133 - L1MB4 LINE L1 -20 6160 6037 * 910 263 10 14 chr13 83623757 83624050 -36120848 - L1M4c LINE L1 -3210 3172 2881 228 182 0 0 chr13 83624050 83624094 -36120804 + (TA)n Simple_repeat Simple_repeat 2 45 0 247 188 29 14 chr13 83624094 83624163 -36120735 + L1MCa LINE L1 1995 2064 -4362 565 178 33 0 chr13 83624163 83624315 -36120583 + (TA)n Simple_repeat Simple_repeat 1 157 0 3503 242 50 37 chr13 83624319 83626146 -36118752 - L1M4c LINE L1 -3498 2884 960 324 336 9 9 chr13 83626159 83626272 -36118626 + MLT1I LTR MaLR 74 186 -223 442 276 136 18 chr13 83627256 83627542 -36117356 + HAL1b LINE L1 611 930 -418 325 257 39 53 chr13 83627557 83627763 -36117135 + HAL1b LINE L1 989 1191 -157 43 56 0 0 chr13 83629007 83629078 -36115820 + AT_rich Low_complexity Low_complexity 1 71 0 203 259 95 70 chr13 83629203 83629361 -36115537 + L2 LINE L2 3115 3276 -37 420 306 14 0 chr13 83630102 83630249 -36114649 + (CA)n Simple_repeat Simple_repeat 2 150 0 681 128 0 0 chr13 83633549 83633658 -36111240 - L1PB3 LINE L1 -2 6868 6760 1728 113 78 3 chr13 83633663 83633947 -36110951 - LTR14B LTR ERVK 0 608 304 4291 113 121 32 chr13 83633966 83634816 -36110082 - pTR5 LTR ERV1 0 2606 1520 917 237 30 61 chr13 83635001 83635296 -36109602 - pTR5 LTR ERV1 -1410 1028 743 479 89 10 139 chr13 83635297 83635398 -36109500 - LTR14A LTR ERVK -256 88 1 13307 217 38 19 chr13 83635405 83635649 -36109249 - L1PB3 LINE L1 -114 6756 6518 306 0 0 0 chr13 83635649 83635683 -36109215 + (TG)n Simple_repeat Simple_repeat 2 35 0 13307 217 38 19 chr13 83635683 83640355 -36104543 - L1PB3 LINE L1 -352 6518 1737 576 106 0 0 chr13 83640356 83640441 -36104457 + L1PBa LINE L1 1671 1755 -5108 2199 109 3 0 chr13 83640506 83640799 -36104099 + AluSc SINE Alu 9 302 -7 4965 224 59 38 chr13 83640996 83642468 -36102430 - L1MDa LINE L1 -4556 1984 328 206 32 32 0 chr13 83642468 83642499 -36102399 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4965 224 59 38 chr13 83642499 83642804 -36102094 - L1MDa LINE L1 -6212 328 31 224 326 109 14 chr13 83642836 83642974 -36101924 + L3b LINE CR1 1190 1340 -243 275 167 0 0 chr13 83645771 83645819 -36099079 + Charlie8 DNA MER1_type 1370 1417 -1000 2833 104 23 42 chr13 83646560 83646842 -36098056 - L1MA1 LINE L1 -1 7720 7449 2008 112 0 31 chr13 83646842 83647128 -36097770 - AluSx SINE Alu -13 299 23 2833 104 23 42 chr13 83647128 83647316 -36097582 - L1MA1 LINE L1 -272 7449 7259 1434 110 12 0 chr13 83647317 83647565 -36097333 - L1MA1 LINE L1 -743 6822 6654 2007 156 137 5 chr13 83647565 83647938 -36096960 - MSTA LTR MaLR 0 428 7 14896 160 23 28 chr13 83647945 83649965 -36094933 - L1MA1 LINE L1 -908 6657 4629 11346 41 20 0 chr13 83649965 83652112 -36092786 + L1PA5 LINE L1 3985 6154 0 14896 160 23 28 chr13 83652112 83652864 -36092034 - L1MA1 LINE L1 -2936 4629 3875 2210 124 0 10 chr13 83652864 83653178 -36091720 - AluY SINE Alu 0 311 1 14896 160 23 28 chr13 83653178 83653836 -36091062 - L1MA1 LINE L1 -3690 3875 3215 2008 141 3 0 chr13 83653836 83654126 -36090772 - AluSg SINE Alu -19 291 1 14896 160 23 28 chr13 83654126 83654990 -36089908 - L1MA1 LINE L1 -4350 3215 2348 2072 158 0 0 chr13 83654990 83655300 -36089598 - AluSx SINE Alu -2 310 1 14896 160 23 28 chr13 83655300 83656560 -36088338 - L1MA1 LINE L1 -5217 2348 1127 619 247 88 44 chr13 83656636 83656976 -36087922 - HAL1 LINE L1 -17 2490 2136 235 336 106 0 chr13 83657006 83657119 -36087779 + L2 LINE L2 3189 3313 0 2862 178 33 13 chr13 83657258 83657886 -36087012 - L1MC2 LINE L1 -9 6335 5695 631 257 178 38 chr13 83658012 83658061 -36086837 - HAL1 LINE L1 -710 1797 1756 1772 149 139 94 chr13 83658061 83658559 -36086339 + MLT2B1 LTR ERVL 1 520 0 631 257 178 38 chr13 83658559 83659290 -36085608 - HAL1 LINE L1 -751 1756 908 26 0 0 0 chr13 83659576 83659602 -36085296 + AT_rich Low_complexity Low_complexity 1 26 0 309 239 77 84 chr13 83659853 83660008 -36084890 - HAL1 LINE L1 -2303 204 51 463 179 8 8 chr13 83660739 83660856 -36084042 + CT-rich Low_complexity Low_complexity 4 120 0 22 20 8 0 chr13 83661403 83661472 -36083426 + AT_rich Low_complexity Low_complexity 1 29 0 193 255 21 0 chr13 83663077 83663124 -36081774 + L2 LINE L2 3189 3236 -77 275 192 177 39 chr13 83663662 83663792 -36081106 - L1MC/D LINE L1 -1922 5886 5739 2435 148 31 7 chr13 83663796 83664214 -36080684 - MSTA LTR MaLR 0 428 1 5787 194 94 54 chr13 83664218 83665659 -36079239 - MSTA-int LTR MaLR -4 1576 79 23437 108 13 25 chr13 83665662 83665740 -36079158 + L1PA7 LINE L1 328 405 -6064 218 56 28 0 chr13 83665740 83665776 -36079122 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 23437 108 13 25 chr13 83665776 83671816 -36073082 + L1PA7 LINE L1 405 6469 0 468 304 78 23 chr13 83673969 83674186 -36070712 - MIR SINE MIR -32 230 2 1133 67 0 0 chr13 83675280 83675429 -36069469 - L1PA5 LINE L1 -2 6152 6004 3675 106 2 2 chr13 83675537 83676085 -36068813 - L1P LINE L1 -4587 1559 1012 4124 99 3 12 chr13 83676541 83677144 -36067754 + HERVE LTR ERV1 3249 3846 -3967 326 310 112 95 chr13 83677241 83677599 -36067299 - L1MDa LINE L1 -5777 763 400 25637 49 10 1 chr13 83678066 83681913 -36062985 - L1PA5 LINE L1 -176 5978 2100 4102 108 2 8 chr13 83682630 83683232 -36061666 + HERVE LTR ERV1 3249 3846 -3967 336 236 102 153 chr13 83683234 83683607 -36061291 + L1M4b LINE L1 208 561 -6298 * 357 288 95 119 chr13 83683301 83683773 -36061125 - L1MDa LINE L1 -5605 935 475 4831 119 51 0 chr13 83684053 83684775 -36060123 - L1P LINE L1 -5376 770 12 731 248 41 41 chr13 83685226 83685444 -36059454 + MER20 DNA MER1_type 1 218 -1 238 301 187 24 chr13 83686818 83686941 -36057957 - MIR SINE MIR -7 255 113 1401 231 72 6 chr13 83687945 83688279 -36056619 - MLT1A1 LTR MaLR 0 365 10 397 254 52 42 chr13 83688366 83688559 -36056339 - Charlie8 DNA MER1_type -2139 278 84 965 193 80 29 chr13 83688807 83689044 -36055854 - MSTB LTR MaLR 0 426 160 5078 206 21 2 chr13 83689047 83690026 -36054872 - THE1C-int LTR MaLR -653 998 1 1512 183 90 15 chr13 83690026 83690360 -36054538 - THE1C LTR MaLR 0 375 17 317 342 104 43 chr13 83690785 83691314 -36053584 + HAL1 LINE L1 308 868 -1639 600 236 68 59 chr13 83691357 83691594 -36053304 + L1M4b LINE L1 878 1116 -5831 23 0 0 0 chr13 83691637 83691660 -36053238 + AT_rich Low_complexity Low_complexity 1 23 0 635 254 55 0 chr13 83691848 83692013 -36052885 - MIR SINE MIR -26 236 63 2734 165 10 14 chr13 83692236 83692721 -36052177 - MER31A LTR ERV1 0 485 3 220 175 35 35 chr13 83693057 83693114 -36051784 + T-rich Low_complexity Low_complexity 5 61 0 22 56 0 0 chr13 83693794 83693830 -36051068 + AT_rich Low_complexity Low_complexity 1 36 0 391 350 88 14 chr13 83694764 83694981 -36049917 + MIR SINE MIR 29 261 -1 209 313 36 62 chr13 83695002 83695194 -36049704 + L3 LINE CR1 1210 1396 -181 2187 126 110 24 chr13 83695877 83696259 -36048639 - MSTA LTR MaLR -5 423 9 439 366 32 5 chr13 83696494 83696680 -36048218 + MIR3 SINE MIR 3 193 -15 291 312 13 0 chr13 83699072 83699149 -36045749 - L2 LINE L2 -2 3270 3193 203 133 0 0 chr13 83699952 83699982 -36044916 + (TG)n Simple_repeat Simple_repeat 2 31 0 1822 180 0 0 chr13 83700423 83700717 -36044181 + AluJo SINE Alu 1 294 -18 4360 91 23 3 chr13 83702371 83702986 -36041912 - L1PA10 LINE L1 0 6168 5542 242 368 135 22 chr13 83704235 83704420 -36040478 + MIR3 SINE MIR 2 207 -1 195 246 0 0 chr13 83705400 83705457 -36039441 + CT-rich Low_complexity Low_complexity 4 60 0 5890 119 11 30 chr13 83707460 83708341 -36036557 - L1PA13 LINE L1 -1 6162 5295 4661 29 2 0 chr13 83708341 83708892 -36036006 - L1PA3 LINE L1 0 6155 5604 5890 119 11 30 chr13 83708892 83709182 -36035716 - L1PA13 LINE L1 -868 5295 5001 200 269 77 109 chr13 83710362 83710518 -36034380 + L2 LINE L2 3117 3267 -5 219 36 0 0 chr13 83711388 83711416 -36033482 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 925 214 0 64 chr13 83712195 83712429 -36032469 - AluJo SINE Alu 0 312 94 24 32 0 0 chr13 83712753 83712784 -36032114 + AT_rich Low_complexity Low_complexity 1 31 0 2220 104 0 3 chr13 83712802 83713091 -36031807 - AluSc SINE Alu -21 288 1 1892 201 72 9 chr13 83713494 83713913 -36030985 + L1MA8 LINE L1 5 449 -6581 5244 176 40 11 chr13 83713921 83714270 -36030628 + L1MA8 LINE L1 5005 5342 -1764 189 0 0 0 chr13 83714270 83714291 -36030607 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 5244 176 40 11 chr13 83714291 83715040 -36029858 + L1MA8 LINE L1 5342 6135 -971 3353 147 9 9 chr13 83715039 83715616 -36029282 + L1MA8 LINE L1 6604 7180 -71 * 230 107 179 0 chr13 83715743 83715799 -36029099 + L1MA8 LINE L1 7180 7245 -6 37 52 0 0 chr13 83715963 83716021 -36028877 + AT_rich Low_complexity Low_complexity 1 58 0 646 282 67 5 chr13 83717267 83717476 -36027422 + MIR SINE MIR 41 262 0 21 0 0 0 chr13 83718907 83718928 -36025970 + AT_rich Low_complexity Low_complexity 1 21 0 395 344 32 6 chr13 83719279 83719436 -36025462 - MIR3 SINE MIR -29 179 19 2259 121 0 0 chr13 83719907 83720213 -36024685 + AluSx SINE Alu 1 306 -6 457 335 49 22 chr13 83720955 83721179 -36023719 - MIR SINE MIR 0 262 33 2067 155 111 8 chr13 83721449 83721836 -36023062 + MSTA LTR MaLR 2 428 0 1671 18 0 14 chr13 83722754 83722975 -36021923 - L1P LINE L1 -2894 3252 3035 27 0 0 0 chr13 83723561 83723588 -36021310 + AT_rich Low_complexity Low_complexity 1 27 0 316 336 29 57 chr13 83723597 83723841 -36021057 + MIR SINE MIR 1 237 -25 364 314 150 35 chr13 83724967 83725254 -36019644 + L2 LINE L2 2588 2907 -407 507 300 31 0 chr13 83725271 83725401 -36019497 + L2 LINE L2 3175 3308 -5 24 67 0 0 chr13 83725843 83725888 -36019010 + AT_rich Low_complexity Low_complexity 1 45 0 371 269 83 56 chr13 83726264 83726480 -36018418 - MIR SINE MIR 0 262 41 276 262 12 12 chr13 83726789 83726873 -36018025 - MIR SINE MIR -50 212 129 1819 185 0 0 chr13 83727229 83727526 -36017372 + AluJb SINE Alu 12 308 -4 360 272 194 46 chr13 83727706 83728030 -36016868 + MLT1J2 LTR MaLR 55 426 -24 641 282 88 57 chr13 83728054 83728508 -36016390 - LTR33A LTR ERVL -28 495 28 23 33 0 0 chr13 83729119 83729149 -36015749 + AT_rich Low_complexity Low_complexity 1 30 0 1211 162 45 127 chr13 83729149 83729463 -36015435 - AluYb8 SINE Alu -25 293 6 379 304 66 73 chr13 83729477 83729750 -36015148 + MLT1J LTR MaLR 229 499 -12 509 301 146 9 chr13 83731180 83731393 -36013505 + MLT1K LTR MaLR 155 396 -192 258 183 33 17 chr13 83731438 83731498 -36013400 + CT-rich Low_complexity Low_complexity 4 64 0 198 268 54 0 chr13 83734322 83734378 -36010520 - L2 LINE L2 0 3272 3214 246 257 176 0 chr13 83734414 83734488 -36010410 + MER5A DNA MER1_type 34 120 -69 1624 94 105 14 chr13 83734598 83734965 -36009933 + LTR12 LTR ERV1 1 2022 -416 1510 146 66 10 chr13 83734965 83735266 -36009632 + L1MA4A LINE L1 5467 5784 -519 218 343 0 0 chr13 83735266 83735336 -36009562 + (TG)n Simple_repeat Simple_repeat 2 71 0 211 321 15 29 chr13 83735279 83735416 -36009482 + (TA)n Simple_repeat Simple_repeat 1 135 0 * 2687 154 42 2 chr13 83735466 83735965 -36008933 + L1MA4A LINE L1 5784 6302 -1 2463 147 71 51 chr13 83736452 83737163 -36007735 + MER51A LTR ERV1 1 640 0 249 33 0 0 chr13 83737505 83737535 -36007363 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 56 0 0 chr13 83737577 83737613 -36007285 + AT_rich Low_complexity Low_complexity 1 36 0 480 259 58 0 chr13 83737777 83737916 -36006982 + MIR SINE MIR 116 262 0 2094 134 0 7 chr13 83738170 83738476 -36006422 - AluSx SINE Alu -8 304 1 239 241 0 0 chr13 83738484 83738538 -36006360 - AluSp SINE Alu -135 168 115 295 329 71 38 chr13 83738752 83738962 -36005936 - L3b LINE CR1 -32 1551 1335 616 309 104 8 chr13 83739052 83739339 -36005559 - L2 LINE L2 -304 3009 2698 210 150 0 0 chr13 83739705 83739745 -36005153 + (TA)n Simple_repeat Simple_repeat 2 41 0 30 83 0 0 chr13 83742391 83742463 -36002435 + AT_rich Low_complexity Low_complexity 1 72 0 22 35 0 0 chr13 83743507 83743536 -36001362 + AT_rich Low_complexity Low_complexity 1 29 0 310 281 0 0 chr13 83744818 83744900 -35999998 + CT-rich Low_complexity Low_complexity 3 84 0 264 302 88 28 chr13 83745652 83745834 -35999064 + L1ME LINE L1 5386 5578 -543 255 259 17 0 chr13 83746118 83746176 -35998722 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 279 203 0 73 chr13 83746751 83746848 -35998050 - L1M LINE L1 -2478 5330 5258 29 47 0 0 chr13 83746935 83746978 -35997920 + AT_rich Low_complexity Low_complexity 1 43 0 508 197 172 73 chr13 83748356 83748711 -35996187 - L1MC5 LINE L1 -51 7910 7521 264 242 16 0 chr13 83748725 83748787 -35996111 + CT-rich Low_complexity Low_complexity 1 63 0 836 209 48 5 chr13 83748926 83749113 -35995785 - MER20 DNA MER1_type -3 216 22 211 355 33 16 chr13 83749984 83750105 -35994793 - L3 LINE CR1 -409 1168 1046 490 336 23 19 chr13 83750622 83750836 -35994062 - L3 LINE CR1 -621 956 742 2132 141 0 3 chr13 83750910 83751223 -35993675 - AluSx SINE Alu 0 312 1 1321 189 13 26 chr13 83751265 83751571 -35993327 + MER33 DNA MER1_type 1 302 -22 254 206 14 0 chr13 83752457 83752530 -35992368 + CT-rich Low_complexity Low_complexity 1 74 0 180 0 0 0 chr13 83753152 83753172 -35991726 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 973 308 87 11 chr13 83756799 83757456 -35987442 - L1ME3A LINE L1 -303 5867 5155 5782 109 14 1 chr13 83758439 83759298 -35985600 - L1PA13 LINE L1 -1 6162 5293 7087 53 6 0 chr13 83759319 83760957 -35983941 - L1PA4 LINE L1 0 6155 4513 1020 126 0 0 chr13 83761135 83761278 -35983620 - FLAM_C SINE Alu 0 143 1 1626 304 119 21 chr13 83761364 83762118 -35982780 + L2 LINE L2 728 1555 -1759 779 290 53 12 chr13 83762125 83762159 -35982739 - LTR33 LTR ERVL -2 519 488 1834 123 17 40 chr13 83762159 83762489 -35982409 - AluSx SINE Alu 0 312 1 779 290 53 12 chr13 83762489 83762888 -35982010 - LTR33 LTR ERVL -33 488 51 1012 16 40 0 chr13 83763592 83763717 -35981181 - L1PA5 LINE L1 -5 6149 6020 182 314 29 0 chr13 83764645 83764715 -35980183 + MIR SINE MIR 78 149 -113 198 0 0 0 chr13 83764736 83764758 -35980140 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 253 381 44 40 chr13 83764932 83765184 -35979714 + L2 LINE L2 2658 2910 -404 293 281 116 41 chr13 83765325 83765471 -35979427 - MIR SINE MIR -50 212 56 1925 206 0 83 chr13 83766006 83766501 -35978397 + MLT2B1 LTR ERVL 3 456 -64 912 91 19 7 chr13 83766507 83766661 -35978237 + (TTTC)n Simple_repeat Simple_repeat 4 159 0 892 271 52 7 chr13 83767007 83767276 -35977622 - MLT1C LTR MaLR 0 467 187 187 304 161 36 chr13 83767706 83767818 -35977080 - L2 LINE L2 0 3272 3147 2288 106 0 3 chr13 83769662 83769964 -35974934 + AluSx SINE Alu 5 305 -7 553 323 40 32 chr13 83769964 83770215 -35974683 + MIR SINE MIR 10 262 0 211 150 25 0 chr13 83770215 83770255 -35974643 + (TTA)n Simple_repeat Simple_repeat 3 43 0 22 70 0 0 chr13 83771097 83771140 -35973758 + AT_rich Low_complexity Low_complexity 1 43 0 225 431 67 12 chr13 83771734 83771989 -35972909 - L2 LINE L2 -429 2885 2617 1676 188 17 0 chr13 83772188 83772480 -35972418 + AluSx SINE Alu 1 297 -15 1306 239 25 32 chr13 83772634 83773035 -35971863 - MLT1D LTR MaLR 0 505 108 1394 177 11 4 chr13 83773221 83773492 -35971406 + L1MB4 LINE L1 5902 6174 -6 339 25 0 0 chr13 83773740 83773780 -35971118 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 440 355 88 27 chr13 83773939 83774350 -35970548 + L1MEc LINE L1 42 477 -5919 1576 147 111 0 chr13 83774377 83774656 -35970242 + AluJb SINE Alu 1 310 -2 244 299 95 58 chr13 83774796 83774877 -35970021 + L1MEc LINE L1 1538 1615 -4781 2245 74 10 20 chr13 83774877 83775174 -35969724 - AluSc SINE Alu -5 304 11 244 299 95 58 chr13 83775174 83775333 -35969565 + L1MEc LINE L1 1615 1787 -4609 1181 275 55 35 chr13 83775365 83776055 -35968843 + L1MEc LINE L1 3141 3844 -2371 1623 199 43 102 chr13 83776060 83776164 -35968734 + MLT1D LTR MaLR 1 110 -395 2043 114 45 3 chr13 83776164 83776454 -35968444 - AluSg SINE Alu -5 305 4 1623 199 43 102 chr13 83776454 83776886 -35968012 + MLT1D LTR MaLR 110 505 0 547 239 11 64 chr13 83776891 83777079 -35967819 + L1MEc LINE L1 3851 4028 -2187 418 203 0 25 chr13 83777110 83777189 -35967709 + L1M2 LINE L1 2 78 -6952 230 114 0 0 chr13 83777193 83777228 -35967670 - L1M2 LINE L1 -6949 81 47 1767 187 34 32 chr13 83777245 83777319 -35967579 + L1M2 LINE L1 74 146 -6884 297 0 0 0 chr13 83777319 83777352 -35967546 + (CA)n Simple_repeat Simple_repeat 2 34 0 1767 187 34 32 chr13 83777352 83777656 -35967242 + L1M2 LINE L1 146 453 -6577 * 8263 190 41 20 chr13 83777651 83779997 -35964901 + L1M2 LINE L1 4123 6543 -708 494 294 61 23 chr13 83780895 83781109 -35963789 - L2 LINE L2 -1202 2112 1891 2102 132 10 0 chr13 83781466 83781769 -35963129 - AluSx SINE Alu -5 307 2 208 298 83 0 chr13 83782437 83782521 -35962377 - MIR SINE MIR -56 206 116 3061 150 45 16 chr13 83782890 83783462 -35961436 - Tigger3(Golem) DNA MER2_type -8 3021 2433 231 346 78 46 chr13 83783649 83783802 -35961096 + L2 LINE L2 3002 3159 -113 23 68 0 0 chr13 83784518 83784562 -35960336 + AT_rich Low_complexity Low_complexity 1 44 0 348 24 0 0 chr13 83784744 83784785 -35960113 + (CA)n Simple_repeat Simple_repeat 2 42 0 240 268 39 58 chr13 83784785 83784990 -35959908 + L1ME3 LINE L1 5285 5485 -2323 273 372 31 0 chr13 83785211 83785402 -35959496 + L1ME3 LINE L1 5741 5937 -225 1936 70 0 4 chr13 83786739 83786997 -35957901 - L1PA7 LINE L1 0 6154 5898 727 128 0 0 chr13 83787001 83787110 -35957788 - AluSg/x SINE Alu -32 280 172 11535 96 1 13 chr13 83787110 83788778 -35956120 - L1P LINE L1 -1159 4987 3340 1925 198 8 3 chr13 83789296 83789659 -35955239 + MLT1A1 LTR MaLR 1 365 0 389 335 11 55 chr13 83789746 83789928 -35954970 + MER5B DNA MER1_type 1 174 -4 2365 46 0 3 chr13 83790890 83791208 -35953690 - AluY SINE Alu 0 317 1 213 159 0 0 chr13 83791256 83791300 -35953598 + (ATG)n Simple_repeat Simple_repeat 3 46 0 384 259 56 62 chr13 83792873 83793035 -35951863 - HERVL LTR ERVL -2518 3136 2976 335 302 62 8 chr13 83793353 83793482 -35951416 - HERVL LTR ERVL -3337 2427 2292 1197 299 35 11 chr13 83793628 83794062 -35950836 + L1MC/D LINE L1 61 504 -5892 2286 88 0 3 chr13 83794069 83794363 -35950535 + AluY SINE Alu 1 293 -18 1475 253 66 91 chr13 83794365 83795156 -35949742 + L1MC/D LINE L1 692 1451 -4945 222 105 0 0 chr13 83795156 83795194 -35949704 + (CA)n Simple_repeat Simple_repeat 2 39 0 1475 253 66 91 chr13 83795194 83795454 -35949444 + L1MC/D LINE L1 1451 1716 -4680 1378 260 70 25 chr13 83795469 83796439 -35948459 + L1MC/D LINE L1 1818 2779 -3436 443 277 42 97 chr13 83797000 83797238 -35947660 + MIR SINE MIR 28 252 -10 2075 145 3 0 chr13 83797617 83797928 -35946970 - AluSx SINE Alu 0 312 1 362 248 229 13 chr13 83798278 83798431 -35946467 - MIR SINE MIR -49 213 28 2698 37 3 6 chr13 83800651 83800979 -35943919 - L1PA5 LINE L1 -6 6148 5822 259 315 53 51 chr13 83801072 83801262 -35943636 - MIR SINE MIR -37 225 36 209 386 116 46 chr13 83801406 83801839 -35943059 + L2 LINE L2 2809 3271 -1 22 0 0 0 chr13 83802249 83802271 -35942627 + AT_rich Low_complexity Low_complexity 1 22 0 815 224 18 0 chr13 83803280 83803445 -35941453 - MER5A DNA MER1_type -21 168 1 345 24 0 0 chr13 83804569 83804611 -35940287 + (CA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr13 83805200 83805224 -35939674 + AT_rich Low_complexity Low_complexity 1 24 0 201 359 158 24 chr13 83807647 83807856 -35937042 + MIR SINE MIR 13 249 -13 221 222 28 14 chr13 83807895 83807967 -35936931 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 180 200 0 0 chr13 83809886 83809921 -35934977 + L2 LINE L2 2939 2973 -299 293 348 37 15 chr13 83810207 83810342 -35934556 - MIR SINE MIR -105 157 20 2986 266 100 12 chr13 83810807 83812262 -35932636 + L1MC/D LINE L1 3956 5532 -752 669 177 23 74 chr13 83812469 83812644 -35932254 - AluJb SINE Alu 0 312 147 343 346 77 27 chr13 83812720 83813122 -35931776 - ERVL LTR ERVL -4578 1186 765 267 317 0 40 chr13 83814849 83814950 -35929948 + MIR SINE MIR 164 260 -2 21 0 0 0 chr13 83815088 83815109 -35929789 + AT_rich Low_complexity Low_complexity 1 21 0 261 182 0 0 chr13 83815581 83815636 -35929262 + CT-rich Low_complexity Low_complexity 2 56 0 28 61 0 0 chr13 83815646 83815695 -35929203 + AT_rich Low_complexity Low_complexity 1 49 0 13839 198 28 5 chr13 83815695 83820018 -35924880 - L1PB3 LINE L1 -7 6863 2443 357 312 46 9 chr13 83820104 83820213 -35924685 - MIR SINE MIR -60 148 36 9991 185 10 35 chr13 83821063 83823745 -35921153 + L1M1 LINE L1 15 4327 -3238 5564 174 53 23 chr13 83823908 83824319 -35920579 - L1MA8 LINE L1 -6 6285 5888 729 46 9 19 chr13 83824319 83824427 -35920471 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1579 184 0 57 chr13 83824427 83824726 -35920172 - AluJo SINE Alu -30 282 1 5564 174 53 23 chr13 83824726 83826301 -35918597 - L1MA8 LINE L1 -402 5889 4228 534 178 0 11 chr13 83826301 83826391 -35918507 + Tigger3(Golem) DNA MER2_type 1 89 -2940 3969 212 118 17 chr13 83826491 83828122 -35916776 + L1MC2 LINE L1 4025 5904 -440 2508 110 3 3 chr13 83828122 83828477 -35916421 - THE1A LTR MaLR 0 355 1 3969 212 118 17 chr13 83828477 83828817 -35916081 + L1MC2 LINE L1 5904 6208 -136 349 230 0 0 chr13 83828834 83828921 -35915977 + L1MC2 LINE L1 6258 6344 0 1745 121 26 0 chr13 83828946 83829219 -35915679 - AluSq SINE Alu -10 303 24 1652 187 53 71 chr13 83829335 83829785 -35915113 - L1MA10 LINE L1 -49 6285 5844 360 111 0 0 chr13 83829929 83829983 -35914915 + (TG)n Simple_repeat Simple_repeat 2 55 0 25 0 0 0 chr13 83830501 83830526 -35914372 + AT_rich Low_complexity Low_complexity 1 25 0 207 108 27 0 chr13 83830987 83831024 -35913874 + (TA)n Simple_repeat Simple_repeat 2 39 0 460 270 34 20 chr13 83831076 83831224 -35913674 + MLT1J LTR MaLR 78 227 -284 1156 325 72 5 chr13 83831644 83832063 -35912835 + MLT1H1 LTR MaLR 3 449 -106 826 38 9 0 chr13 83832087 83832192 -35912706 + AluY SINE Alu 1 106 -205 2566 237 83 18 chr13 83832305 83833496 -35911402 - L1MCb LINE L1 -4580 1986 674 292 288 163 7 chr13 83833537 83833690 -35911208 - L1MCb LINE L1 -6231 333 157 514 200 0 0 chr13 83833773 83833863 -35911035 + MLT1H1 LTR MaLR 460 549 -6 2078 151 0 0 chr13 83833871 83834182 -35910716 + AluSq SINE Alu 2 312 -1 324 268 98 13 chr13 83834244 83834397 -35910501 + L1M4 LINE L1 4467 4632 -1514 431 273 87 0 chr13 83837667 83837828 -35907070 + MIR SINE MIR 29 203 -59 260 132 0 0 chr13 83837835 83837873 -35907025 + tRNA-Met-e tRNA tRNA 1 38 -37 25 65 0 0 chr13 83838011 83838057 -35906841 + AT_rich Low_complexity Low_complexity 1 46 0 630 244 6 25 chr13 83838387 83838547 -35906351 - FRAM SINE Alu -9 167 11 183 204 0 0 chr13 83838890 83838939 -35905959 + CT-rich Low_complexity Low_complexity 1 49 0 1428 165 83 0 chr13 83839047 83839313 -35905585 - AluJb SINE Alu -24 288 1 2209 114 0 0 chr13 83839657 83839956 -35904942 + AluSx SINE Alu 1 299 -13 4750 139 48 95 chr13 83840447 83841600 -35903298 + Tigger3b DNA MER2_type 121 1218 -13 3897 209 50 11 chr13 83841613 83842580 -35902318 - L1 LINE L1 -1917 4229 3226 2292 167 5 8 chr13 83842610 83843005 -35901893 - L1MC1 LINE L1 -98 6515 6122 771 144 0 8 chr13 83843006 83843131 -35901767 + FLAM_C SINE Alu 13 136 -7 2160 167 105 7 chr13 83843131 83843670 -35901228 - L1MC1 LINE L1 -476 6137 2100 248 359 28 0 chr13 83843803 83843984 -35900914 + L1MDa LINE L1 1853 2038 -4502 6571 75 14 5 chr13 83844013 83847133 -35897765 + L1PA7 LINE L1 2937 6151 -3 498 352 47 12 chr13 83847352 83847693 -35897205 - L1MC1 LINE L1 -5997 610 258 280 279 18 55 chr13 83847762 83847927 -35896971 - L1M4 LINE L1 -3126 3020 2862 888 251 20 70 chr13 83847927 83848282 -35896616 + L1ME2 LINE L1 5678 6014 -150 234 316 63 57 chr13 83847977 83848328 -35896570 + L1MA2 LINE L1 5716 6068 -236 * 23 0 0 0 chr13 83848328 83848351 -35896547 + AT_rich Low_complexity Low_complexity 1 23 0 1702 188 0 13 chr13 83848745 83849049 -35895849 - AluJo SINE Alu -12 300 1 300 275 50 100 chr13 83849861 83850021 -35894877 - HAL1 LINE L1 -1775 732 581 207 340 72 20 chr13 83850149 83850229 -35894669 - MIR SINE MIR -16 246 172 1819 140 3 57 chr13 83850229 83850544 -35894354 + AluSx SINE Alu 1 298 -14 207 340 72 20 chr13 83850544 83850616 -35894282 - MIR SINE MIR -90 172 86 659 294 97 19 chr13 83851164 83851630 -35893268 + L1M4 LINE L1 3589 4090 -2056 24 32 0 0 chr13 83851656 83851687 -35893211 + AT_rich Low_complexity Low_complexity 1 31 0 272 239 148 0 chr13 83851687 83851775 -35893123 + L1MC3 LINE L1 6818 6918 -867 5588 218 96 11 chr13 83851921 83853473 -35891425 + L1MDa LINE L1 610 2293 -4247 467 310 68 22 chr13 83853447 83853821 -35891077 + L1MC4a LINE L1 6831 7249 -1187 * 31 82 0 0 chr13 83854531 83854604 -35890294 + AT_rich Low_complexity Low_complexity 1 73 0 36 0 0 0 chr13 83854990 83855026 -35889872 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr13 83855070 83855095 -35889803 + AT_rich Low_complexity Low_complexity 1 25 0 236 208 61 84 chr13 83855784 83855891 -35889007 - L1MC4a LINE L1 0 8034 7738 948 221 5 5 chr13 83855955 83856173 -35888725 - AluJb SINE Alu 0 307 90 726 237 6 13 chr13 83856547 83856703 -35888195 + MER63A DNA MER1_type 55 209 -1 520 214 139 48 chr13 83856765 83856952 -35887946 - MER63A DNA MER1_type -3 207 4 235 260 0 0 chr13 83857026 83857076 -35887822 + GA-rich Low_complexity Low_complexity 4 53 0 22 0 0 0 chr13 83857876 83857898 -35887000 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 83858407 83858438 -35886460 + AT_rich Low_complexity Low_complexity 1 31 0 6891 53 8 11 chr13 83859520 83860470 -35884428 + L1PA7 LINE L1 5208 6154 0 340 325 60 34 chr13 83860729 83860963 -35883935 - MIR SINE MIR -10 252 13 180 0 0 0 chr13 83861632 83861652 -35883246 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 230 225 79 79 chr13 83861652 83861830 -35883068 + L1MDa LINE L1 2414 2591 -4130 857 226 139 3 chr13 83861832 83862124 -35882774 + MER33 DNA MER1_type 1 324 0 272 278 104 0 chr13 83862124 83862239 -35882659 + L1MDa LINE L1 2593 2719 -4002 300 131 246 0 chr13 83862278 83862339 -35882559 - MADE1 DNA Mariner -4 76 1 495 325 187 30 chr13 83862871 83863406 -35881492 + L3 LINE CR1 958 1576 -1 1839 184 26 12 chr13 83863515 83863858 -35881040 - MER7A DNA MER2_type 0 346 1 1457 122 58 88 chr13 83864485 83864779 -35880119 + AluJb SINE Alu 1 285 -27 366 229 110 0 chr13 83865197 83865306 -35879592 + MLT1J LTR MaLR 3 123 -388 2169 72 0 29 chr13 83866618 83866924 -35877974 + AluY SINE Alu 1 297 -14 7155 31 3 0 chr13 83867032 83868082 -35876816 - L1PA4 LINE L1 -2 6153 5085 954 176 0 0 chr13 83868204 83868369 -35876529 + FRAM SINE Alu 2 166 0 21 82 0 0 chr13 83869672 83869721 -35875177 + AT_rich Low_complexity Low_complexity 1 49 0 252 213 0 0 chr13 83871359 83871420 -35873478 + GA-rich Low_complexity Low_complexity 5 65 0 204 214 0 0 chr13 83871932 83871988 -35872910 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1835 142 3 40 chr13 83872094 83872397 -35872501 - AluSx SINE Alu -19 293 2 655 232 124 36 chr13 83872587 83872781 -35872117 - MIR SINE MIR -3 259 49 1539 178 40 36 chr13 83873767 83874070 -35870828 - AluJo SINE Alu -8 304 1 252 236 22 22 chr13 83874077 83874166 -35870732 - L1ME3A LINE L1 -193 5977 5889 351 209 28 55 chr13 83876348 83876530 -35868368 + A-rich Low_complexity Low_complexity 4 180 0 30 59 0 0 chr13 83876577 83876628 -35868270 + AT_rich Low_complexity Low_complexity 1 51 0 260 179 0 30 chr13 83877209 83877276 -35867622 + T-rich Low_complexity Low_complexity 2 66 0 269 274 95 0 chr13 83878328 83878412 -35866486 + MIR SINE MIR 3 94 -168 615 27 0 0 chr13 83880252 83880325 -35864573 + (CTATT)n Simple_repeat Simple_repeat 1 73 0 354 291 20 46 chr13 83880419 83880570 -35864328 - MIR SINE MIR -111 151 5 2256 111 0 0 chr13 83880588 83880885 -35864013 + AluSq SINE Alu 1 297 -16 243 343 20 0 chr13 83880973 83881072 -35863826 - L2 LINE L2 -9 3263 3163 235 223 68 48 chr13 83883062 83883165 -35861733 + MLT1J2 LTR MaLR 346 450 0 328 252 111 74 chr13 83883186 83883321 -35861577 - MIR3 SINE MIR -60 148 9 225 317 35 48 chr13 83884012 83884157 -35860741 + MER5A DNA MER1_type 4 146 -43 212 233 116 101 chr13 83884327 83884456 -35860442 - L3 LINE CR1 -829 748 618 208 137 39 0 chr13 83884458 83884509 -35860389 + (TA)n Simple_repeat Simple_repeat 1 53 0 254 121 61 10 chr13 83884569 83884668 -35860230 + (TA)n Simple_repeat Simple_repeat 1 104 0 228 186 0 0 chr13 83884942 83884985 -35859913 + L1ME LINE L1 5691 5733 -433 477 86 0 0 chr13 83884991 83885061 -35859837 + MER57B LTR ERV1 365 434 0 1977 187 39 21 chr13 83885061 83885446 -35859452 + MER21B LTR ERV1 199 590 -273 228 319 65 32 chr13 83885907 83886186 -35858712 + L1 LINE L1 4732 5019 -1127 5851 235 69 26 chr13 83886198 83887334 -35857564 + L1MDa LINE L1 19 1248 -5292 4496 71 3 0 chr13 83887334 83887911 -35856987 + L1PA7 LINE L1 5573 6151 -3 5851 235 69 26 chr13 83887911 83888405 -35856493 + L1MDa LINE L1 1248 1719 -4821 215 213 0 21 chr13 83888519 83888566 -35856332 - MIR SINE MIR -140 122 77 476 114 14 0 chr13 83891739 83891809 -35853089 + AluS SINE Alu 5 75 -234 35 54 0 0 chr13 83892214 83892270 -35852628 + AT_rich Low_complexity Low_complexity 1 56 0 224 329 12 12 chr13 83892324 83892409 -35852489 + L2 LINE L2 3186 3270 -2 1860 151 3 30 chr13 83892770 83892932 -35851966 - AluSx SINE Alu -16 296 144 2163 134 0 0 chr13 83892932 83893224 -35851674 - AluSg SINE Alu -16 294 3 1860 151 3 30 chr13 83893224 83893365 -35851533 - AluSx SINE Alu -168 144 1 2374 222 31 41 chr13 83893732 83894385 -35850513 + L1M4 LINE L1 16 661 -5881 2534 130 28 62 chr13 83894537 83895058 -35849840 - L1M2 LINE L1 -743 5403 5007 1940 113 25 0 chr13 83895058 83895333 -35849565 - AluSg SINE Alu -26 284 3 2534 130 28 62 chr13 83895333 83895511 -35849387 - L1M2 LINE L1 -1139 5007 4825 200 281 18 18 chr13 83895644 83895701 -35849197 + L2 LINE L2 3008 3064 -208 926 222 34 11 chr13 83895713 83896133 -35848765 + MLT1D LTR MaLR 1 505 0 1509 200 40 3 chr13 83896766 83897066 -35847832 - L1PB4 LINE L1 -7 6149 5839 1179 208 0 5 chr13 83897077 83897284 -35847614 - Tigger7 DNA MER2_type -498 207 2 344 326 134 13 chr13 83897481 83897705 -35847193 + MIR SINE MIR 12 262 0 185 333 114 23 chr13 83897863 83897995 -35846903 + MIR SINE MIR 103 246 -16 26 50 0 0 chr13 83898500 83898540 -35846358 + AT_rich Low_complexity Low_complexity 1 40 0 1712 182 38 11 chr13 83899036 83899404 -35845494 - L1ME1 LINE L1 -262 5904 5527 431 248 91 52 chr13 83899455 83899685 -35845213 - LTR40b LTR ERVL -88 374 136 206 323 31 0 chr13 83899852 83899917 -35844981 - L2 LINE L2 -736 2578 2512 247 204 0 0 chr13 83899917 83899966 -35844932 - HAL1 LINE L1 -969 1538 1490 1263 269 181 32 chr13 83900152 83901097 -35843801 - HAL1 LINE L1 -343 2164 1079 1841 202 66 7 chr13 83901100 83901540 -35843358 + MLT1C LTR MaLR 1 466 -1 213 39 0 0 chr13 83901618 83901644 -35843254 + (TCTCC)n Simple_repeat Simple_repeat 4 29 0 1376 218 36 0 chr13 83901644 83901924 -35842974 - AluJo SINE Alu -10 302 13 1588 179 0 0 chr13 83902051 83902297 -35842601 - AluJb SINE Alu -66 246 1 2090 131 23 11 chr13 83902880 83903231 -35841667 + THE1A LTR MaLR 1 355 0 11283 88 13 22 chr13 83903231 83903651 -35841247 + THE1A-int LTR MaLR 1 423 -1157 2194 109 0 0 chr13 83903651 83903944 -35840954 - AluSx SINE Alu 0 312 20 11283 88 13 22 chr13 83903944 83905117 -35839781 + THE1A-int LTR MaLR 423 1580 0 769 80 9 26 chr13 83905117 83905230 -35839668 + THE1A LTR MaLR 1 111 -253 22 56 0 0 chr13 83905363 83905399 -35839499 + AT_rich Low_complexity Low_complexity 1 36 0 2217 182 131 5 chr13 83905837 83906414 -35838484 - MER39 LTR ERV1 0 707 4 278 213 201 44 chr13 83906601 83906874 -35838024 - L1M4 LINE L1 -2670 3476 3161 1264 174 0 0 chr13 83906882 83907100 -35837798 - AluJb SINE Alu -4 308 91 1523 89 236 0 chr13 83907100 83907346 -35837552 + LTR12 LTR ERV1 1 304 -410 * 8894 91 2 8 chr13 83907344 83908561 -35836337 + Harlequin LTR ERV1 3735 4944 -3455 1344 133 146 12 chr13 83908562 83908884 -35836014 + Harlequin LTR ERV1 840 1204 -5692 454 277 98 0 chr13 83908884 83908996 -35835902 - MER5A DNA MER1_type -60 129 7 469 284 159 20 chr13 83909076 83909277 -35835621 - MLT1K LTR MaLR -358 230 2 1699 160 18 72 chr13 83909437 83909825 -35835073 + L1MA9 LINE L1 5800 6166 -146 408 250 10 0 chr13 83909916 83910020 -35834878 + L1MA10 LINE L1 6226 6330 -4 378 310 9 9 chr13 83910021 83910134 -35834764 + MER94 DNA DNA 17 129 -5 21 0 0 0 chr13 83910411 83910432 -35834466 + AT_rich Low_complexity Low_complexity 1 21 0 310 113 16 16 chr13 83910791 83910853 -35834045 + (TA)n Simple_repeat Simple_repeat 2 63 0 382 250 12 0 chr13 83911329 83911409 -35833489 - HERVL LTR ERVL -2143 3511 3431 1674 187 33 40 chr13 83911434 83911669 -35833229 - L1ME2 LINE L1 -9 6155 5921 423 301 25 15 chr13 83911669 83911868 -35833030 - L1PB1 LINE L1 -227 5924 5724 10373 53 4 1 chr13 83911873 83913965 -35830933 - L1PA5 LINE L1 -1 6153 4059 6734 57 10 10 chr13 83913961 83914961 -35829937 + L1PA7 LINE L1 5142 6141 -13 * 859 219 78 9 chr13 83914997 83915216 -35829682 - MSTB2 LTR MaLR -223 234 1 364 242 39 92 chr13 83915515 83915668 -35829230 + MIR SINE MIR 42 186 -76 422 227 0 0 chr13 83915776 83915851 -35829047 + MER63 DNA MER1_type 676 750 -312 310 250 92 0 chr13 83915854 83915930 -35828968 + MER63 DNA MER1_type 978 1060 0 218 289 184 7 chr13 83916295 83916447 -35828451 - MIR SINE MIR -69 193 15 2617 51 0 3 chr13 83917328 83917640 -35827258 - AluY SINE Alu 0 311 1 996 153 7 0 chr13 83918155 83918351 -35826547 - AluSg/x SINE Alu 0 326 130 471 97 30 3 chr13 83918434 83918519 -35826379 - L1MA4A LINE L1 -328 5976 5888 21 36 0 0 chr13 83919887 83919915 -35824983 + AT_rich Low_complexity Low_complexity 1 28 0 2111 35 8 4 chr13 83920276 83920530 -35824368 + AluY SINE Alu 44 298 -13 206 304 0 0 chr13 83921320 83921376 -35823522 - MIR SINE MIR -112 150 95 252 0 0 0 chr13 83922296 83922324 -35822574 + (T)n Simple_repeat Simple_repeat 1 28 0 1785 39 0 0 chr13 83922418 83922624 -35822274 + AluY SINE Alu 1 206 -105 7956 25 1 0 chr13 83922950 83923905 -35820993 + L1P LINE L1 4304 5259 -887 200 244 0 0 chr13 83925132 83925173 -35819725 + A-rich Low_complexity Low_complexity 1 41 0 1516 167 42 21 chr13 83925811 83925923 -35818975 + AluJb SINE Alu 3 111 -201 282 116 0 0 chr13 83925923 83925966 -35818932 + (CA)n Simple_repeat Simple_repeat 2 44 0 1516 167 42 21 chr13 83925966 83926141 -35818757 + AluJb SINE Alu 111 296 -16 54 62 0 0 chr13 83926272 83926368 -35818530 + AT_rich Low_complexity Low_complexity 1 96 0 25 51 0 0 chr13 83927002 83927041 -35817857 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr13 83928105 83928126 -35816772 + (A)n Simple_repeat Simple_repeat 1 21 0 187 238 12 88 chr13 83929721 83929801 -35815097 + L2 LINE L2 2692 2765 -549 262 310 159 0 chr13 83930221 83930334 -35814564 + L2 LINE L2 3140 3270 -2 730 118 9 9 chr13 83930902 83931012 -35813886 - MSTA LTR MaLR -318 110 1 8346 158 20 55 chr13 83931012 83931843 -35813055 - MSTA-int LTR MaLR 0 1580 832 1963 128 3 27 chr13 83931843 83932141 -35812757 - AluSq SINE Alu -22 291 1 8346 158 20 55 chr13 83932141 83932942 -35811956 - MSTA-int LTR MaLR -748 832 5 685 126 29 0 chr13 83932946 83933049 -35811849 - MSTA LTR MaLR 0 428 323 4382 182 9 8 chr13 83933149 83934019 -35810879 - L1 LINE L1 -2081 4065 3195 11346 41 5 2 chr13 83934019 83936178 -35808720 + L1PA2 LINE L1 3985 6150 -5 1206 91 81 0 chr13 83936609 83936795 -35808103 - L1PA14 LINE L1 0 6161 5961 3609 180 8 15 chr13 83936796 83937518 -35807380 - L1P LINE L1 -1417 4729 4013 974 303 178 34 chr13 83938205 83938790 -35806108 - L2 LINE L2 -436 2878 2210 244 331 26 1 chr13 83939384 83939473 -35805425 - MIR SINE MIR -64 144 54 1941 139 152 11 chr13 83940051 83940426 -35804472 - MSTA LTR MaLR 0 428 1 28 29 0 0 chr13 83940438 83940473 -35804425 + AT_rich Low_complexity Low_complexity 1 35 0 628 254 35 51 chr13 83941379 83941576 -35803322 - MIR SINE MIR -55 207 14 1658 166 0 4 chr13 83941727 83941986 -35802912 + AluJb SINE Alu 31 288 -24 254 292 117 19 chr13 83942229 83942383 -35802515 - MIR3 SINE MIR -3 205 37 5152 244 34 30 chr13 84042627 84044817 -35700081 + L1M2 LINE L1 2548 4616 -1530 2428 60 3 13 chr13 84045280 84045594 -35699304 - AluY SINE Alu 0 311 1 1671 119 163 28 chr13 84045654 84045973 -35698925 - THE1B LTR MaLR -2 362 1 1861 243 76 2 chr13 84046083 84046572 -35698326 - L1ME1 LINE L1 -18 6148 5624 991 158 16 0 chr13 84046610 84046793 -35698105 + L1M2 LINE L1 5351 5536 -776 * 14141 167 42 29 chr13 84046787 84048364 -35696534 - L1 LINE L1 -3664 3901 2346 1722 176 3 19 chr13 84048364 84048677 -35696221 - AluJb SINE Alu -4 308 1 14141 167 42 29 chr13 84048677 84050575 -35694323 - L1 LINE L1 -5219 2346 36 1658 157 128 15 chr13 84050575 84050912 -35693986 - THE1C LTR MaLR 0 375 1 14141 167 42 29 chr13 84050912 84050949 -35693949 - L1 LINE L1 -7529 36 1 553 356 62 50 chr13 84050955 84051615 -35693283 + L2 LINE L2 2005 2672 -642 21 0 0 0 chr13 84051809 84051830 -35693068 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr13 84052070 84052091 -35692807 + (TA)n Simple_repeat Simple_repeat 1 21 0 506 333 74 24 chr13 84052465 84052804 -35692094 - ERVL LTR ERVL -2763 3001 2646 383 318 66 63 chr13 84053896 84054402 -35690496 + L1MC2 LINE L1 1309 1786 -4429 21 0 0 0 chr13 84054630 84054651 -35690247 + AT_rich Low_complexity Low_complexity 1 21 0 357 293 37 12 chr13 84055136 84055292 -35689606 + L1ME LINE L1 5511 5654 -467 4883 215 16 38 chr13 84055456 84056751 -35688147 + L1MC2 LINE L1 2532 3798 -2417 34841 35 3 3 chr13 84056851 84061157 -35683741 + L1P LINE L1 490 4799 -1347 3319 186 79 28 chr13 84061375 84062174 -35682724 + L1MC2 LINE L1 5574 6413 0 255 340 22 22 chr13 84062208 84062479 -35682419 + L1ME LINE L1 4882 5152 -994 33 80 0 0 chr13 84062540 84062615 -35682283 + AT_rich Low_complexity Low_complexity 1 75 0 661 319 29 10 chr13 84062716 84063030 -35681868 + L1ME LINE L1 5492 5811 -359 302 267 11 11 chr13 84063108 84063198 -35681700 + (TA)n Simple_repeat Simple_repeat 1 90 0 337 292 99 61 chr13 84063266 84063578 -35681320 + L1MC3 LINE L1 2719 3042 -3104 4435 241 128 7 chr13 84063787 84065142 -35679756 + L1MC3 LINE L1 5420 6938 -847 387 0 0 0 chr13 84065161 84065204 -35679694 + (CA)n Simple_repeat Simple_repeat 2 44 0 225 0 0 0 chr13 84065203 84065228 -35679670 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 2656 229 47 9 chr13 84065229 84065872 -35679026 + L1MC3 LINE L1 7103 7769 -16 246 62 0 0 chr13 84065922 84065954 -35678944 + (CA)n Simple_repeat Simple_repeat 2 33 0 1228 248 13 13 chr13 84067398 84067697 -35677201 + AluJo SINE Alu 2 300 -2 306 0 0 0 chr13 84068686 84068720 -35676178 + (TG)n Simple_repeat Simple_repeat 1 34 0 778 118 8 17 chr13 84068751 84068870 -35676028 + MER4B LTR ERV1 457 574 -36 562 109 65 0 chr13 84070117 84070209 -35674689 + MER4A LTR ERV1 1 98 -566 1828 122 5 75 chr13 84070209 84070579 -35674319 + MER4A LTR ERV1 261 663 -1 238 341 79 8 chr13 84070768 84070894 -35674004 - MIR SINE MIR -75 187 53 4174 209 31 27 chr13 84070966 84072221 -35672677 - L1MA9 LINE L1 -25 6287 5030 2584 11 0 0 chr13 84072221 84072504 -35672394 - AluY SINE Alu -12 299 17 4174 209 31 27 chr13 84072504 84072542 -35672356 - L1MA9 LINE L1 -1282 5030 4994 590 270 10 5 chr13 84073932 84074128 -35670770 + L1M4 LINE L1 2569 2765 -3381 21 0 0 0 chr13 84074908 84074929 -35669969 + AT_rich Low_complexity Low_complexity 1 21 0 702 284 19 23 chr13 84075290 84075505 -35669393 - MIR SINE MIR 0 262 49 197 301 96 12 chr13 84075702 84075785 -35669113 + L2 LINE L2 3181 3270 -2 183 375 89 18 chr13 84075851 84075963 -35668935 - L2 LINE L2 -20 3252 3133 484 204 13 64 chr13 84076850 84076939 -35667959 - L1MCb LINE L1 -5203 842 763 2360 80 3 3 chr13 84076939 84077241 -35667657 - AluSp SINE Alu -11 302 1 484 204 13 64 chr13 84077241 84077308 -35667590 - L1MCb LINE L1 -5282 763 694 * 1599 237 41 21 chr13 84077292 84077900 -35666998 - L1M4 LINE L1 -2780 3366 2747 1621 206 43 33 chr13 84078241 84078664 -35666234 - L1MB7 LINE L1 -46 6138 5712 1604 206 25 41 chr13 84078714 84079151 -35665747 - L1MA8 LINE L1 -29 6262 5833 * 2803 234 23 56 chr13 84079148 84080187 -35664711 - L1MB7 LINE L1 -988 5158 4154 28 61 0 0 chr13 84080751 84080800 -35664098 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 84080998 84081019 -35663879 + AT_rich Low_complexity Low_complexity 1 21 0 1252 204 3 93 chr13 84082875 84083209 -35661689 - AluJb SINE Alu -8 304 1 24 77 0 0 chr13 84083369 84083421 -35661477 + AT_rich Low_complexity Low_complexity 1 52 0 2128 117 7 0 chr13 84084569 84084877 -35660021 + AluSp SINE Alu 1 310 -3 21 0 0 0 chr13 84086055 84086076 -35658822 + AT_rich Low_complexity Low_complexity 1 21 0 343 118 0 0 chr13 84086375 84086426 -35658472 + MSTA LTR MaLR 60 110 -318 546 138 0 0 chr13 84086427 84086514 -35658384 - L1P4 LINE L1 -558 5608 5522 2889 168 7 26 chr13 84086557 84086961 -35657937 + L1PA16 LINE L1 5602 5993 -173 2252 153 97 3 chr13 84086961 84087352 -35657546 + MSTA LTR MaLR 1 428 0 2889 168 7 26 chr13 84087352 84087514 -35657384 + L1PA16 LINE L1 5993 6157 -9 41 82 0 0 chr13 84087612 84087709 -35657189 + AT_rich Low_complexity Low_complexity 1 97 0 293 252 67 8 chr13 84087739 84087858 -35657040 - L1ME LINE L1 -315 5806 5681 21 0 0 0 chr13 84087859 84087880 -35657018 + AT_rich Low_complexity Low_complexity 1 21 0 1953 141 0 3 chr13 84088004 84088294 -35656604 + AluSg SINE Alu 1 289 -21 218 250 0 18 chr13 84088868 84088924 -35655974 + GA-rich Low_complexity Low_complexity 3 57 0 2641 141 26 5 chr13 84089531 84089950 -35654948 + MSTA LTR MaLR 1 428 0 992 215 24 0 chr13 84091070 84091275 -35653623 - L1PA16 LINE L1 -7 6159 5950 1206 81 47 0 chr13 84091470 84091642 -35653256 - PABL_A LTR ERV1 -480 180 1 294 254 28 0 chr13 84091675 84091746 -35653152 - HERVL LTR ERVL -3730 1924 1852 586 334 55 8 chr13 84092233 84092558 -35652340 - HERVL LTR ERVL -4290 1270 855 336 282 87 48 chr13 84092585 84092791 -35652107 + LTR33A LTR ERVL 307 520 -3 434 167 26 0 chr13 84093370 84093448 -35651450 + L1MB5 LINE L1 6032 6111 -63 706 269 27 10 chr13 84093781 84094052 -35650846 + LTR35 LTR ERV1 405 677 -2 2524 238 29 20 chr13 84094055 84094701 -35650197 - MER76 LTR ERV -24 664 13 288 194 26 50 chr13 84094713 84094793 -35650105 + L1MB5 LINE L1 6102 6176 -1 2050 97 4 0 chr13 84094993 84095295 -35649603 - AluSp SINE Alu 0 316 14 31 44 0 0 chr13 84095848 84095893 -35649005 + AT_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr13 84096543 84096581 -35648317 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr13 84096741 84096774 -35648124 + AT_rich Low_complexity Low_complexity 1 33 0 713 182 19 44 chr13 84097172 84097331 -35647567 - FRAM SINE Alu -11 155 1 22 35 0 0 chr13 84098208 84098237 -35646661 + AT_rich Low_complexity Low_complexity 1 29 0 8714 122 1 3 chr13 84099598 84100856 -35644042 - THE1B-int LTR MaLR -325 1255 1 2131 135 42 20 chr13 84100856 84101212 -35643686 - THE1B LTR MaLR 0 364 1 25 31 0 0 chr13 84101841 84101873 -35643025 + AT_rich Low_complexity Low_complexity 1 32 0 369 280 71 58 chr13 84102218 84102443 -35642455 + L2 LINE L2 3086 3313 0 1386 219 76 28 chr13 84102867 84103223 -35641675 - MSTB1 LTR MaLR -49 383 11 4162 218 49 25 chr13 84103537 84104665 -35640233 - L1M3 LINE L1 -1938 4208 3054 506 218 0 0 chr13 84104662 84104772 -35640126 + L1M3 LINE L1 4207 4316 -1830 * 1353 222 0 28 chr13 84104826 84105114 -35639784 + AluJo SINE Alu 15 294 -18 4994 173 64 8 chr13 84105141 84106057 -35638841 + L1MA5 LINE L1 4540 5403 -897 207 69 0 0 chr13 84106057 84106086 -35638812 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4994 173 64 8 chr13 84106086 84106845 -35638053 + L1MA5 LINE L1 5403 6296 -4 3939 192 32 41 chr13 84106858 84108364 -35636534 + L1M3 LINE L1 4303 5817 -517 188 149 21 0 chr13 84108755 84108802 -35636096 + (TA)n Simple_repeat Simple_repeat 2 49 0 26 0 0 0 chr13 84108918 84108944 -35635954 + AT_rich Low_complexity Low_complexity 1 26 0 180 268 0 0 chr13 84110620 84110661 -35634237 + L2 LINE L2 3014 3054 -259 317 356 23 8 chr13 84111085 84111217 -35633681 - L2 LINE L2 -212 3060 2927 2761 81 20 2 chr13 84111455 84111848 -35633050 + L1PA13 LINE L1 5764 6163 0 201 321 12 25 chr13 84112342 84112423 -35632475 - MIR SINE MIR -109 99 20 29 60 0 0 chr13 84113401 84113451 -35631447 + AT_rich Low_complexity Low_complexity 1 50 0 1540 182 21 28 chr13 84113478 84113769 -35631129 - AluJo SINE Alu -23 289 1 402 223 123 0 chr13 84113802 84113932 -35630966 - MER104 DNA Tc2 -31 149 4 260 276 23 11 chr13 84114356 84114443 -35630455 - MLT1J2 LTR MaLR -24 426 339 7889 164 22 14 chr13 84115343 84117830 -35627068 + L1MA2 LINE L1 3696 6202 -102 2099 95 7 3 chr13 84117954 84118250 -35626648 + AluY SINE Alu 1 297 -14 3832 264 96 28 chr13 84118251 84118469 -35626429 - L1M4 LINE L1 -755 5391 5189 2211 96 3 0 chr13 84118469 84118770 -35626128 + AluSp SINE Alu 7 308 -5 3832 264 96 28 chr13 84118770 84120489 -35624409 - L1M4 LINE L1 -957 5189 3323 1581 235 37 26 chr13 84120491 84120951 -35623947 + MLT1C LTR MaLR 1 465 -2 183 162 0 0 chr13 84121085 84121122 -35623776 + T-rich Low_complexity Low_complexity 4 40 0 2342 63 0 3 chr13 84121670 84121970 -35622928 - AluY SINE Alu -12 299 1 227 300 0 0 chr13 84122590 84122670 -35622228 + L1MEd LINE L1 686 765 -5354 1603 165 17 24 chr13 84124030 84124321 -35620577 + AluJb SINE Alu 1 289 -23 1912 155 10 0 chr13 84124334 84124638 -35620260 + AluSx SINE Alu 4 310 -2 28 0 0 0 chr13 84125094 84125122 -35619776 + AT_rich Low_complexity Low_complexity 1 28 0 2517 266 59 46 chr13 84125208 84126684 -35618214 + L1MEd LINE L1 2229 3723 -2406 21 57 0 0 chr13 84126971 84127006 -35617892 + AT_rich Low_complexity Low_complexity 1 35 0 716 261 44 6 chr13 84127023 84127250 -35617648 - L1MD1 LINE L1 -246 5996 5798 2101 90 10 3 chr13 84127257 84127546 -35617352 - AluSc SINE Alu -18 291 1 1277 237 45 51 chr13 84127627 84128079 -35616819 - MER39 LTR ERV1 -2 682 67 338 179 79 100 chr13 84128082 84128174 -35616724 - L1MD1 LINE L1 -575 5784 5694 2032 114 10 3 chr13 84128174 84128471 -35616427 - AluSq SINE Alu -14 299 1 338 179 79 100 chr13 84128471 84128518 -35616380 - L1MD1 LINE L1 -665 5694 5648 565 265 36 84 chr13 84128561 84129033 -35615865 - L1MCc LINE L1 -4887 1536 1233 502 232 52 90 chr13 84129044 84129311 -35615587 + L1MC5 LINE L1 6843 7099 -862 1420 212 82 9 chr13 84129312 84129652 -35615246 + MLT1A1 LTR MaLR 1 365 0 713 260 79 8 chr13 84129763 84130017 -35614881 + L1MC5 LINE L1 7249 7520 -441 1542 170 46 7 chr13 84130325 84130608 -35614290 - MLT1A1 LTR MaLR -71 294 1 25 31 0 0 chr13 84131685 84131717 -35613181 + AT_rich Low_complexity Low_complexity 1 32 0 269 206 44 0 chr13 84133410 84133478 -35611420 + Charlie8 DNA MER1_type 143 213 -2204 595 166 21 28 chr13 84133650 84133795 -35611103 - SVA Other Other -761 625 482 2095 153 24 19 chr13 84133813 84134185 -35610713 - THE1C LTR MaLR 0 375 2 288 137 0 0 chr13 84134328 84134379 -35610519 + (T)n Simple_repeat Simple_repeat 1 51 0 578 279 52 26 chr13 84134639 84134697 -35610201 + L1M4 LINE L1 3893 3948 -2198 2213 19 0 0 chr13 84134697 84134955 -35609943 + L1PA4 LINE L1 5895 6152 -3 578 279 52 26 chr13 84134955 84135125 -35609773 + L1M4 LINE L1 3948 4127 -2019 1773 227 83 13 chr13 84135174 84135633 -35609265 - MER76 LTR ERV -197 491 1 623 231 16 0 chr13 84137852 84137973 -35606925 - MSTB1 LTR MaLR -301 131 9 950 26 9 0 chr13 84138166 84138280 -35606618 + SVA Other Other 1271 1385 -1 338 291 60 60 chr13 84138349 84138583 -35606315 + L1M4 LINE L1 2579 2812 -3334 384 314 76 0 chr13 84138610 84138728 -35606170 + MLT1G1 LTR MaLR 448 574 -21 553 283 115 4 chr13 84138759 84138985 -35605913 - MIR SINE MIR 0 262 12 201 405 18 0 chr13 84139062 84139173 -35605725 + MIR SINE MIR 32 144 -64 201 322 17 59 chr13 84140186 84140304 -35604594 + MIR SINE MIR 91 203 -59 297 75 0 0 chr13 84141400 84141440 -35603458 + (CA)n Simple_repeat Simple_repeat 1 40 0 971 235 24 12 chr13 84141569 84141824 -35603074 + LTR22B LTR ERVK 1 258 -234 2034 125 3 3 chr13 84142062 84142365 -35602533 - AluSx SINE Alu -9 303 1 191 88 29 0 chr13 84142977 84143011 -35601887 + (TA)n Simple_repeat Simple_repeat 2 36 0 230 226 24 12 chr13 84143052 84143136 -35601762 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 21 0 0 0 chr13 84143219 84143240 -35601658 + AT_rich Low_complexity Low_complexity 1 21 0 2160 90 3 3 chr13 84143689 84143977 -35600921 - AluSg SINE Alu -22 288 1 21 0 0 0 chr13 84145299 84145320 -35599578 + AT_rich Low_complexity Low_complexity 1 21 0 1938 142 40 52 chr13 84145614 84146055 -35598843 - THE1B LTR MaLR 0 428 1 3256 113 16 8 chr13 84146087 84146589 -35598309 + MER9 LTR ERVK 2 507 -4 377 332 31 36 chr13 84147354 84147547 -35597351 - L2 LINE L2 -244 3069 2878 829 142 42 133 chr13 84147979 84148219 -35596679 - LTR45B LTR ERV1 0 489 272 1596 104 12 0 chr13 84148284 84148533 -35596365 + L1PA13 LINE L1 5910 6161 -2 206 121 0 0 chr13 84149105 84149138 -35595760 + (A)n Simple_repeat Simple_repeat 1 33 0 589 298 77 22 chr13 84149224 84149671 -35595227 - LTR33 LTR ERVL -2 519 1 276 356 98 0 chr13 84150043 84150175 -35594723 + MIR SINE MIR 48 192 -70 1267 164 67 19 chr13 84151314 84151583 -35593315 + L1MA4 LINE L1 6006 6287 -13 2211 93 7 0 chr13 84151906 84152196 -35592702 + AluSp SINE Alu 1 292 -21 23 86 0 0 chr13 84152660 84152718 -35592180 + AT_rich Low_complexity Low_complexity 1 58 0 200 125 0 25 chr13 84153367 84153407 -35591491 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 24 0 0 0 chr13 84155555 84155579 -35589319 + AT_rich Low_complexity Low_complexity 1 24 0 243 242 39 0 chr13 84155900 84156028 -35588870 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 24 0 0 0 chr13 84156034 84156058 -35588840 + AT_rich Low_complexity Low_complexity 1 24 0 183 184 0 0 chr13 84156098 84156136 -35588762 + (TA)n Simple_repeat Simple_repeat 1 38 0 30 77 0 0 chr13 84157388 84157453 -35587445 + AT_rich Low_complexity Low_complexity 1 65 0 311 330 59 8 chr13 84157605 84157723 -35587175 - L2 LINE L2 -4 3309 3186 22 0 0 0 chr13 84157772 84157794 -35587104 + AT_rich Low_complexity Low_complexity 1 22 0 1920 159 151 0 chr13 84157929 84158301 -35586597 + MSTA LTR MaLR 1 428 0 1872 166 36 6 chr13 84158455 84158792 -35586106 + MER7A DNA MER2_type 2 346 0 672 258 111 28 chr13 84158858 84159110 -35585788 - MLT1D LTR MaLR 0 505 233 919 240 23 62 chr13 84159114 84159342 -35585556 + L1MB3 LINE L1 3509 3720 -2426 3533 129 6 4 chr13 84159342 84159886 -35585012 + L1PA16 LINE L1 5612 6156 -10 919 240 23 62 chr13 84159886 84160011 -35584887 + L1MB3 LINE L1 3720 3848 -2298 1570 199 14 3 chr13 84160014 84160306 -35584592 + AluJb SINE Alu 1 295 -17 3527 214 54 35 chr13 84160306 84161328 -35583570 + L1MB3 LINE L1 4168 5227 -947 1657 155 6 76 chr13 84161328 84161657 -35583241 + AluJo SINE Alu 1 306 -6 3527 214 54 35 chr13 84161657 84162436 -35582462 + L1MB3 LINE L1 5227 5990 -184 287 75 0 0 chr13 84162446 84162486 -35582412 - THE1B LTR MaLR -324 40 1 11421 102 1 0 chr13 84162486 84164064 -35580834 - THE1B-int LTR MaLR 0 1580 1 1999 116 78 20 chr13 84164064 84164408 -35580490 - THE1B LTR MaLR 0 364 1 273 181 267 9 chr13 84164408 84164513 -35580385 + L1MB3 LINE L1 6052 6183 0 1891 163 29 35 chr13 84165380 84165755 -35579143 - THE1C LTR MaLR 0 375 3 227 274 10 59 chr13 84165886 84165988 -35578910 + MIR SINE MIR 120 216 -46 1843 154 6 16 chr13 84166666 84166877 -35578021 - AluSx SINE Alu 0 312 289 213 39 0 0 chr13 84166877 84166903 -35577995 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1843 154 6 16 chr13 84166903 84167187 -35577711 - AluSx SINE Alu -23 289 4 312 362 63 23 chr13 84168127 84168348 -35576550 - L1ME LINE L1 -338 5824 5595 25 31 0 0 chr13 84168349 84168381 -35576517 + AT_rich Low_complexity Low_complexity 1 32 0 204 208 0 42 chr13 84168612 84168660 -35576238 + (TATG)n Simple_repeat Simple_repeat 3 48 0 2808 6 0 3 chr13 84171689 84172001 -35572897 - AluYa5 SINE Alu 0 311 1 27 49 0 0 chr13 84172671 84172712 -35572186 + AT_rich Low_complexity Low_complexity 1 41 0 212 207 0 35 chr13 84173764 84173822 -35571076 + CT-rich Low_complexity Low_complexity 1 56 0 321 26 0 0 chr13 84174224 84174262 -35570636 + (CA)n Simple_repeat Simple_repeat 2 39 0 473 339 127 3 chr13 84174700 84175007 -35569891 + L1ME3A LINE L1 5607 5951 -219 2238 100 0 13 chr13 84175126 84175425 -35569473 - AluSx SINE Alu -17 295 1 26 50 0 0 chr13 84175597 84175637 -35569261 + AT_rich Low_complexity Low_complexity 1 40 0 304 360 29 49 chr13 84175682 84175990 -35568908 + L1ME LINE L1 5539 5840 -326 1249 158 43 18 chr13 84176143 84176422 -35568476 - L1MA8 LINE L1 -2 6289 6004 265 247 0 43 chr13 84177263 84177356 -35567542 + MER58C DNA MER1_type 44 132 -83 215 294 0 0 chr13 84177356 84177407 -35567491 + GA-rich Low_complexity Low_complexity 3 53 0 558 251 32 53 chr13 84177517 84177704 -35567194 - MER5A DNA MER1_type -6 183 1 279 293 171 8 chr13 84177750 84177959 -35566939 - MLT1J2 LTR MaLR -213 233 2 345 47 0 0 chr13 84178094 84178137 -35566761 + (TG)n Simple_repeat Simple_repeat 2 44 0 1580 153 88 0 chr13 84178217 84178480 -35566418 + AluSg SINE Alu 1 306 0 181 0 0 0 chr13 84178480 84178500 -35566398 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 570 327 43 31 chr13 84178844 84179101 -35565797 - MIR SINE MIR 0 262 3 288 267 12 12 chr13 84179561 84179647 -35565251 + MER58A DNA MER1_type 4 89 -18 3394 134 15 10 chr13 84179686 84179778 -35565120 - MER34B LTR ERV1 -14 693 603 2333 78 3 0 chr13 84179778 84180071 -35564827 + AluY SINE Alu 1 294 -17 3394 134 15 10 chr13 84180071 84180530 -35564368 - MER34B LTR ERV1 -104 603 1 278 235 10 71 chr13 84180654 84180752 -35564146 + MLT1L LTR MaLR 148 239 -376 443 238 94 66 chr13 84180840 84180997 -35563901 + MLT1C LTR MaLR 61 222 -245 360 240 110 20 chr13 84180997 84181143 -35563755 - MER67D LTR ERV1 0 514 356 288 136 15 61 chr13 84181152 84181218 -35563680 - MER67C LTR ERV1 -307 403 341 1249 155 108 36 chr13 84181246 84181524 -35563374 - MER67C LTR ERV1 -344 366 69 319 205 13 0 chr13 84181571 84181649 -35563249 - MER67D LTR ERV1 -431 83 5 461 306 116 9 chr13 84181666 84181882 -35563016 + MLT1C LTR MaLR 229 467 0 273 263 62 12 chr13 84182150 84182230 -35562668 + MER91C DNA MER1_type 26 109 -31 263 295 7 36 chr13 84182870 84183009 -35561889 + L1ME LINE L1 4703 4837 -1309 1532 174 3 34 chr13 84183012 84183095 -35561803 + MER49 LTR ERV1 1 85 -838 3079 134 42 49 chr13 84183095 84183709 -35561189 + MER4B LTR ERV1 1 610 0 1532 174 3 34 chr13 84183709 84183919 -35560979 + MER49 LTR ERV1 85 285 -638 1350 257 14 11 chr13 84183949 84184303 -35560595 + MER4D LTR ERV1 549 903 0 1067 245 55 77 chr13 84184330 84184624 -35560274 + L1ME LINE L1 4864 5163 -1003 2004 96 46 11 chr13 84184624 84184906 -35559992 + AluSx SINE Alu 2 293 -19 1067 245 55 77 chr13 84184906 84185351 -35559547 + L1ME LINE L1 5163 5594 -572 573 254 29 46 chr13 84185386 84185626 -35559272 + L1ME LINE L1 5539 5774 -390 1138 128 39 6 chr13 84185730 84185937 -35558961 - AluSg/x SINE Alu 0 311 99 2033 108 29 26 chr13 84186099 84186405 -35558493 + AluSq SINE Alu 2 308 -5 715 346 46 46 chr13 84186920 84187514 -35557384 + L2 LINE L2 2710 3311 -2 563 280 52 26 chr13 84187532 84187725 -35557173 - MIR SINE MIR -1 261 64 31 44 0 0 chr13 84188213 84188258 -35556640 + AT_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr13 84189018 84189060 -35555838 + AT_rich Low_complexity Low_complexity 1 42 0 190 358 46 9 chr13 84190109 84190218 -35554680 + L2 LINE L2 2247 2359 -955 280 281 0 12 chr13 84190593 84190675 -35554223 + (CA)n Simple_repeat Simple_repeat 2 82 0 367 345 108 54 chr13 84190708 84191097 -35553801 - L2 LINE L2 0 3313 2904 2418 153 31 5 chr13 84191130 84191547 -35553351 + MSTA LTR MaLR 1 428 0 2028 168 8 0 chr13 84191548 84191905 -35552993 + MSTA-int LTR MaLR 2 361 -1290 2042 152 28 19 chr13 84191905 84192266 -35552632 - THE1B LTR MaLR 0 364 1 10222 119 18 26 chr13 84192266 84193859 -35551039 - THE1C-int LTR MaLR 0 1580 1 2533 118 13 5 chr13 84193859 84194231 -35550667 - THE1C LTR MaLR 0 375 1 1023 86 20 0 chr13 84194231 84194383 -35550515 - THE1C-int LTR MaLR -1425 155 1 1937 143 64 14 chr13 84194383 84194740 -35550158 - THE1C LTR MaLR 0 375 1 189 74 0 0 chr13 84194759 84194786 -35550112 + (TG)n Simple_repeat Simple_repeat 1 27 0 305 264 11 58 chr13 84194809 84194823 -35550075 + (TATG)n Simple_repeat Simple_repeat 1 14 -152 1600 178 35 56 chr13 84194823 84195217 -35549681 - MLT1B LTR MaLR -4 386 1 305 264 11 58 chr13 84195217 84195376 -35549522 + (TATG)n Simple_repeat Simple_repeat 14 166 0 202 333 36 12 chr13 84195416 84195500 -35549398 + MER5A DNA MER1_type 103 188 -1 * 482 348 75 53 chr13 84195500 84196063 -35548835 - L2 LINE L2 -1746 1568 994 279 0 0 0 chr13 84196301 84196332 -35548566 + (CA)n Simple_repeat Simple_repeat 2 32 0 216 250 0 18 chr13 84197497 84197553 -35547345 + CT-rich Low_complexity Low_complexity 3 57 0 535 161 16 57 chr13 84197940 84198064 -35546834 - MLT1E3 LTR MaLR -454 170 52 2227 75 0 7 chr13 84198130 84198423 -35546475 + AluY SINE Alu 4 294 -17 455 258 0 0 chr13 84198426 84198523 -35546375 - MLT2F LTR ERVL -566 97 1 30 45 0 0 chr13 84199224 84199268 -35545630 + AT_rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr13 84199558 84199591 -35545307 + AT_rich Low_complexity Low_complexity 1 33 0 183 129 32 0 chr13 84200539 84200570 -35544328 + L2 LINE L2 3267 3298 -15 901 342 49 47 chr13 84201649 84202538 -35542360 + ERVL LTR ERVL 1747 2701 -3011 233 218 0 0 chr13 84202832 84202887 -35542011 + L1MC4 LINE L1 6648 6702 -1340 243 0 0 0 chr13 84202893 84202920 -35541978 + (CA)n Simple_repeat Simple_repeat 2 28 0 186 43 0 0 chr13 84202926 84202949 -35541949 + (GA)n Simple_repeat Simple_repeat 1 23 0 857 125 0 0 chr13 84202949 84203069 -35541829 - AluSc SINE Alu -46 263 144 488 327 72 49 chr13 84203155 84203365 -35541533 + ERVL LTR ERVL 4928 5154 -610 2163 90 0 4 chr13 84203365 84203679 -35541219 - AluSc SINE Alu 0 313 1 488 327 72 49 chr13 84203679 84203855 -35541043 + ERVL LTR ERVL 5154 5324 -440 905 121 0 22 chr13 84203914 84204174 -35540724 + THE1C-int LTR MaLR 1245 1580 0 2126 114 67 25 chr13 84204174 84204532 -35540366 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chr13 84205489 84205511 -35539387 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr13 84206204 84206242 -35538656 + AT_rich Low_complexity Low_complexity 1 38 0 1381 256 44 81 chr13 84207323 84207843 -35537055 - MLT1F1 LTR MaLR 0 567 67 22 0 0 0 chr13 84207932 84207954 -35536944 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 84207966 84207997 -35536901 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 84208736 84208762 -35536136 + AT_rich Low_complexity Low_complexity 1 26 0 2516 44 0 25 chr13 84209777 84210092 -35534806 + AluY SINE Alu 4 310 -1 628 142 11 19 chr13 84210683 84210859 -35534039 + MER50 LTR ERV1 206 420 -314 * 696 150 8 17 chr13 84210856 84210976 -35533922 + MER50 LTR ERV1 588 706 -28 22 35 0 0 chr13 84210995 84211024 -35533874 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 84211968 84212000 -35532898 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr13 84212011 84212046 -35532852 + (CA)n Simple_repeat Simple_repeat 2 36 0 302 284 157 0 chr13 84212169 84212271 -35532627 + MIR SINE MIR 89 206 -56 227 222 0 0 chr13 84212548 84212593 -35532305 + T-rich Low_complexity Low_complexity 1 45 0 2396 92 0 0 chr13 84214379 84214684 -35530214 + AluY SINE Alu 1 305 -6 963 299 50 40 chr13 84215019 84215443 -35529455 - LTR16C LTR ERVL -15 476 49 262 352 14 69 chr13 84215541 84215686 -35529212 - L2 LINE L2 0 3272 3136 1680 181 0 7 chr13 84215770 84216063 -35528835 - AluJb SINE Alu -16 296 6 238 329 99 31 chr13 84216551 84216712 -35528186 + L2 LINE L2 3100 3271 -1 2087 117 0 0 chr13 84216784 84217065 -35527833 - AluSx SINE Alu -22 290 10 303 328 23 35 chr13 84217103 84217274 -35527624 - MIR SINE MIR -74 188 20 21 0 0 0 chr13 84217360 84217381 -35527517 + AT_rich Low_complexity Low_complexity 1 21 0 2088 147 43 22 chr13 84220154 84220569 -35524329 - L1MA9 LINE L1 0 6312 5889 1886 231 41 39 chr13 84220575 84221264 -35523634 - L1MCa LINE L1 -4895 1669 980 342 90 60 0 chr13 84221278 84221345 -35523553 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1705 169 21 61 chr13 84221369 84221748 -35523150 + MLT1A1 LTR MaLR 2 365 0 1249 263 58 61 chr13 84221763 84222525 -35522373 - L1MCa LINE L1 -5096 949 411 877 260 53 51 chr13 84222532 84223047 -35521851 - PABL_B LTR ERV1 0 667 1 1825 196 39 5 chr13 84223064 84223447 -35521451 + Tigger3b DNA MER2_type 20 415 -816 645 261 29 19 chr13 84223494 84223724 -35521174 - L1MCa LINE L1 -5831 343 15 22 0 0 0 chr13 84224710 84224732 -35520166 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 84225081 84225103 -35519795 + AT_rich Low_complexity Low_complexity 1 22 0 578 187 11 13 chr13 84225114 84225281 -35519617 - L1MA9 LINE L1 -245 6057 5877 2882 120 54 60 chr13 84225283 84225798 -35519100 - LTR12 LTR ERV1 -185 529 18 312 91 91 0 chr13 84225798 84225853 -35519045 - L1MA8 LINE L1 -374 5917 5858 26 30 0 0 chr13 84227298 84227331 -35517567 + AT_rich Low_complexity Low_complexity 1 33 0 190 370 0 14 chr13 84229881 84229954 -35514944 - MIR3 SINE MIR -39 169 98 201 191 0 21 chr13 84230030 84230077 -35514821 + CT-rich Low_complexity Low_complexity 4 49 0 1768 154 34 3 chr13 84230125 84230423 -35514475 + AluSx SINE Alu 1 307 -5 34 99 0 0 chr13 84230472 84230583 -35514315 + AT_rich Low_complexity Low_complexity 1 111 0 391 266 38 98 chr13 84230801 84230881 -35514017 + MER69A DNA AcHobo 1 84 -2442 1926 149 3 3 chr13 84230881 84231177 -35513721 - AluSx SINE Alu -16 296 1 391 266 38 98 chr13 84231177 84231280 -35513618 + MER69A DNA AcHobo 84 173 -4 284 334 96 86 chr13 84231554 84231856 -35513042 + L3 LINE CR1 1216 1520 -57 207 0 0 0 chr13 84232179 84232202 -35512696 + (CA)n Simple_repeat Simple_repeat 2 24 0 221 258 0 0 chr13 84233005 84233067 -35511831 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 21 0 0 0 chr13 84234019 84234040 -35510858 + AT_rich Low_complexity Low_complexity 1 21 0 2412 70 0 0 chr13 84234119 84234418 -35510480 - AluY SINE Alu -9 302 4 218 208 0 0 chr13 84234615 84234663 -35510235 + T-rich Low_complexity Low_complexity 1 48 0 263 316 25 0 chr13 84235871 84235950 -35508948 + L2 LINE L2 3190 3270 -2 304 305 152 30 chr13 84237010 84237174 -35507724 + L1MC4a LINE L1 5711 5894 -1914 184 440 41 14 chr13 84237423 84237641 -35507257 + L2 LINE L2 2825 3048 -224 7425 35 0 0 chr13 84237922 84238863 -35506035 - L1PA4 LINE L1 -6 6149 5209 2048 17 0 0 chr13 84238868 84239107 -35505791 + L1P LINE L1 4937 5175 -971 1453 244 64 75 chr13 84239269 84239884 -35505014 + L1M4 LINE L1 4374 4979 -1167 264 30 0 0 chr13 84239884 84239917 -35504981 + (TG)n Simple_repeat Simple_repeat 2 34 0 1453 244 64 75 chr13 84239917 84240099 -35504799 + L1M4 LINE L1 4979 5162 -984 550 253 51 22 chr13 84240336 84240514 -35504384 - MER58A DNA MER1_type 0 224 42 2019 115 48 3 chr13 84241625 84241920 -35502978 + AluSc SINE Alu 1 308 -1 644 246 81 54 chr13 84244349 84244682 -35500216 - L1ME3A LINE L1 -1 6169 5828 1345 198 7 7 chr13 84244823 84245096 -35499802 + AluJo SINE Alu 1 273 -39 1137 242 39 150 chr13 84245163 84245885 -35499013 + MLT2F LTR ERVL 5 646 -17 6623 147 47 6 chr13 84246399 84247337 -35497561 - Tigger3b DNA MER2_type -1798 1230 232 2329 53 0 3 chr13 84247337 84247642 -35497256 - AluY SINE Alu 0 304 1 6623 147 47 6 chr13 84247642 84247884 -35497014 - Tigger3b DNA MER2_type -2796 232 1 456 273 57 43 chr13 84247958 84248167 -35496731 - L1ME3A LINE L1 -41 6129 5918 2294 215 30 44 chr13 84248567 84249191 -35495707 + MLT2B3 LTR ERVL 3 520 0 2792 266 59 7 chr13 84249378 84250258 -35494640 + L1MEc LINE L1 45 970 -5426 1565 238 50 39 chr13 84250330 84250926 -35493972 + L1M4 LINE L1 4195 4797 -1349 229 259 17 0 chr13 84251048 84251106 -35493792 - L2 LINE L2 -69 3244 3186 953 225 135 35 chr13 84251602 84251913 -35492985 - MLT1A2 LTR MaLR 0 374 33 1323 124 153 64 chr13 84251915 84251959 -35492939 - L1PB4 LINE L1 -2 6154 6115 2240 116 3 0 chr13 84251959 84252269 -35492629 - AluSq SINE Alu -2 311 1 1323 124 153 64 chr13 84252269 84252506 -35492392 - L1PB4 LINE L1 -41 6115 5848 23 68 0 0 chr13 84254278 84254322 -35490576 + AT_rich Low_complexity Low_complexity 1 44 0 403 333 29 29 chr13 84254491 84254629 -35490269 + L2 LINE L2 3134 3271 -1 2084 191 55 0 chr13 84255607 84256009 -35488889 - MSTB LTR MaLR 0 426 3 1468 209 3 7 chr13 84256098 84256385 -35488513 + AluJo SINE Alu 6 291 -21 347 277 20 0 chr13 84257480 84257581 -35487317 + L1ME3 LINE L1 3 105 -5965 800 300 145 28 chr13 84257950 84259184 -35485714 + L1ME3 LINE L1 3437 4814 -1266 771 285 64 11 chr13 84259231 84259512 -35485386 + Charlie4a DNA MER1_type 5 300 -208 2285 89 0 16 chr13 84259522 84259837 -35485061 - AluSx SINE Alu -2 310 1 2131 108 7 0 chr13 84260059 84260355 -35484543 - AluSp SINE Alu -15 298 1 1171 285 71 36 chr13 84260356 84261460 -35483438 + L1ME3 LINE L1 4930 6073 -23 203 342 13 25 chr13 84261591 84261670 -35483228 + L3b LINE CR1 1269 1346 -237 21 71 0 0 chr13 84263387 84263429 -35481469 + AT_rich Low_complexity Low_complexity 1 42 0 497 114 0 0 chr13 84264315 84264385 -35480513 + U6 snRNA snRNA 1 70 -37 21 0 0 0 chr13 84264390 84264411 -35480487 + AT_rich Low_complexity Low_complexity 1 21 0 459 241 0 9 chr13 84264514 84264630 -35480268 + L1MC4a LINE L1 5811 5925 -1883 2837 120 31 2 chr13 84264636 84265094 -35479804 - Tigger1 DNA MER2_type -1388 1030 560 21 0 0 0 chr13 84265498 84265519 -35479379 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 84266229 84266250 -35478648 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 84266499 84266527 -35478371 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chr13 84267087 84267138 -35477760 + AT_rich Low_complexity Low_complexity 1 51 0 31 68 0 0 chr13 84268786 84268845 -35476053 + AT_rich Low_complexity Low_complexity 1 59 0 29 0 0 0 chr13 84269060 84269089 -35475809 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr13 84269255 84269293 -35475605 + (CA)n Simple_repeat Simple_repeat 1 38 0 27 0 0 0 chr13 84269573 84269600 -35475298 + AT_rich Low_complexity Low_complexity 1 27 0 728 312 102 41 chr13 84269705 84270246 -35474652 - L2 LINE L2 0 3313 2734 1774 113 68 0 chr13 84270266 84270563 -35474335 - AluSg SINE Alu 0 315 1 38 39 0 0 chr13 84270664 84270716 -35474182 + AT_rich Low_complexity Low_complexity 1 52 0 2259 207 42 12 chr13 84270850 84271420 -35473478 + L1M2 LINE L1 3962 4548 -1598 3482 172 19 47 chr13 84272723 84273830 -35471068 + L1M2 LINE L1 4533 5604 -708 5606 114 45 17 chr13 84273834 84274812 -35470086 + MER11B LTR ERVK 1 1172 -94 2389 83 0 3 chr13 84275160 84275472 -35469426 - AluY SINE Alu 0 311 1 204 219 0 0 chr13 84276053 84276094 -35468804 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 548 352 47 47 chr13 84276514 84276940 -35467958 - L2 LINE L2 -799 2515 2090 426 134 0 15 chr13 84278191 84278258 -35466640 + Tigger2 DNA MER2_type 1 66 -2652 2273 146 52 0 chr13 84278262 84278631 -35466267 + Tigger2 DNA MER2_type 2303 2690 -28 536 260 120 0 chr13 84279380 84279530 -35465368 + MIR SINE MIR 31 198 -64 409 228 8 8 chr13 84279649 84279776 -35465122 + GA-rich Low_complexity Low_complexity 4 130 0 2072 128 7 3 chr13 84280267 84280564 -35464334 - AluSq SINE Alu -15 298 1 432 316 63 8 chr13 84280741 84280978 -35463920 - MIR SINE MIR -5 257 8 231 167 0 0 chr13 84281342 84281384 -35463514 + (TA)n Simple_repeat Simple_repeat 1 42 0 209 307 27 0 chr13 84281741 84281816 -35463082 + GA-rich Low_complexity Low_complexity 1 77 0 346 291 13 13 chr13 84281817 84281968 -35462930 + G-rich Low_complexity Low_complexity 5 155 0 2322 178 14 28 chr13 84282901 84283430 -35461468 + LTR27 LTR ERV1 7 501 0 29 98 0 0 chr13 84283704 84283796 -35461102 + AT_rich Low_complexity Low_complexity 1 92 0 3492 185 42 7 chr13 84283859 84284589 -35460309 - L1MC1 LINE L1 -19 6314 5559 234 156 0 22 chr13 84284592 84284637 -35460261 - MLT2A1 LTR ERVL -8 445 402 403 65 130 0 chr13 84284658 84284905 -35459993 + (TA)n Simple_repeat Simple_repeat 1 279 0 2584 121 26 5 chr13 84284932 84285321 -35459577 - MLT2A1 LTR ERVL -47 397 1 1726 189 85 38 chr13 84285323 84285564 -35459334 - L1MC1 LINE L1 -743 5403 5175 1944 148 0 10 chr13 84285564 84285861 -35459037 - AluJb SINE Alu -2 310 17 1726 189 85 38 chr13 84285861 84286355 -35458543 - L1MC1 LINE L1 -971 5175 4800 3305 242 121 4 chr13 84287197 84288110 -35456788 + MER45B DNA AcHobo 8 1026 -14 629 278 160 9 chr13 84289365 84289808 -35455090 - L1ME3 LINE L1 -265 5897 5388 2055 112 3 20 chr13 84289840 84290144 -35454754 - AluSg SINE Alu 0 310 12 1749 57 4 13 chr13 84290158 84290388 -35454510 - AluY SINE Alu 0 311 84 426 286 184 37 chr13 84291717 84292011 -35452887 - MLT1I LTR MaLR 0 409 73 467 343 91 49 chr13 84293813 84294221 -35450677 + HAL1 LINE L1 19 443 -2064 365 309 73 71 chr13 84294233 84294712 -35450186 - L2 LINE L2 -1229 2085 1606 302 359 77 10 chr13 84295008 84295217 -35449681 + LTR16C LTR ERVL 71 293 -198 313 284 45 0 chr13 84295277 84295365 -35449533 + LTR16C LTR ERVL 383 474 -17 318 50 0 0 chr13 84295539 84295579 -35449319 + (TG)n Simple_repeat Simple_repeat 2 41 0 278 335 57 13 chr13 84296868 84297026 -35447872 + MIR SINE MIR 97 261 -1 299 289 0 0 chr13 84297031 84297128 -35447770 + (ATG)n Simple_repeat Simple_repeat 2 98 0 1917 142 35 43 chr13 84297251 84297625 -35447273 + THE1C LTR MaLR 1 371 -4 1240 220 32 61 chr13 84298340 84298571 -35446327 - MSTD LTR MaLR -92 304 82 1993 101 14 4 chr13 84298571 84298885 -35446013 - AluSc SINE Alu 0 317 1 1240 220 32 61 chr13 84298885 84298965 -35445933 - MSTD LTR MaLR -314 82 1 22 0 0 0 chr13 84301607 84301629 -35443269 + AT_rich Low_complexity Low_complexity 1 22 0 1937 159 44 56 chr13 84302100 84302508 -35442390 - MER57A LTR ERV1 0 403 1 885 137 0 0 chr13 84302667 84302798 -35442100 + AluSg/x SINE Alu 154 284 -28 31 0 0 0 chr13 84302800 84302831 -35442067 + AT_rich Low_complexity Low_complexity 1 31 0 2567 139 24 2 chr13 84303668 84304084 -35440814 + MER61B LTR ERV1 1 425 0 802 215 86 79 chr13 84304133 84304412 -35440486 + MER21B LTR ERV1 12 292 -571 1170 231 119 32 chr13 84304488 84304799 -35440099 + MER21B LTR ERV1 421 758 -105 437 172 12 141 chr13 84305305 84305468 -35439430 - MLT1I LTR MaLR -11 398 257 213 175 0 0 chr13 84305779 84305819 -35439079 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1494 250 29 46 chr13 84305882 84306126 -35438772 - MER39 LTR ERV1 0 707 460 2777 165 52 99 chr13 84306126 84306895 -35438003 + MER50 LTR ERV1 1 733 -1 1494 250 29 46 chr13 84306895 84307203 -35437695 - MER39 LTR ERV1 -247 460 1 228 370 144 20 chr13 84307489 84307635 -35437263 + L2 LINE L2 3108 3271 -1 23 33 0 0 chr13 84309883 84309913 -35434985 + AT_rich Low_complexity Low_complexity 1 30 0 2237 102 0 3 chr13 84310571 84310875 -35434023 - AluSq SINE Alu -10 303 1 5219 152 36 63 chr13 84310876 84312007 -35432891 - L1MC1 LINE L1 -8 6325 5227 28 48 0 0 chr13 84312243 84312285 -35432613 + AT_rich Low_complexity Low_complexity 1 42 0 319 285 60 20 chr13 84312517 84312668 -35432230 + L1MA10 LINE L1 6175 6331 -3 227 224 13 0 chr13 84313928 84314004 -35430894 + (TA)n Simple_repeat Simple_repeat 1 77 0 912 319 121 25 chr13 84314716 84315384 -35429514 + L2 LINE L2 2151 2882 -432 271 291 137 66 chr13 84315402 84315629 -35429269 - MER70B LTR ERVL -26 552 310 329 314 50 52 chr13 84316106 84316526 -35428372 - MER70-int LTR ERVL -167 4856 4438 2051 92 46 3 chr13 84316934 84317217 -35427681 - AluY SINE Alu -16 295 1 1288 303 40 44 chr13 84317562 84318086 -35426812 - MER70-int LTR ERVL -1495 3528 3007 1588 179 83 187 chr13 84318086 84319060 -35425838 + LTR1B LTR ERV1 1 1020 0 344 368 47 12 chr13 84319060 84319318 -35425580 - MER70-int LTR ERVL -2013 3010 2744 4320 309 47 48 chr13 84319767 84320327 -35424571 - MER70-int LTR ERVL -2292 2731 2172 540 0 0 0 chr13 84320327 84320387 -35424511 + (TTTTA)n Simple_repeat Simple_repeat 4 63 0 4320 309 47 48 chr13 84320387 84320437 -35424461 - MER70-int LTR ERVL -2851 2172 2123 2164 106 0 32 chr13 84320437 84320749 -35424149 - AluSc SINE Alu -6 303 2 4320 309 47 48 chr13 84320749 84322307 -35422591 - MER70-int LTR ERVL -2900 2123 565 186 43 0 0 chr13 84322607 84322630 -35422268 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr13 84324227 84324251 -35420647 + AT_rich Low_complexity Low_complexity 1 24 0 458 286 81 32 chr13 84325042 84325227 -35419671 - MIR SINE MIR -3 259 66 1917 131 0 4 chr13 84326627 84326901 -35417997 + AluSx SINE Alu 1 273 -39 3447 87 25 4 chr13 84327390 84327874 -35417024 - L1PA8A LINE L1 -4 6127 5634 3617 119 41 0 chr13 84327874 84328439 -35416459 + L1P LINE L1 4689 5276 -870 3177 193 198 28 chr13 84329477 84330426 -35414472 + MER52C LTR ERV1 1 1278 0 1693 176 101 5 chr13 84330813 84331178 -35413720 + L1MC1 LINE L1 5352 5749 -464 2588 166 17 0 chr13 84331190 84331659 -35413239 + L1MC1 LINE L1 5857 6333 0 772 205 77 43 chr13 84333757 84333991 -35410907 - MLT1D LTR MaLR 0 505 264 248 93 47 0 chr13 84334000 84334043 -35410855 + CT-rich Low_complexity Low_complexity 2 46 0 2069 123 30 0 chr13 84334046 84334347 -35410551 - AluSg SINE Alu 0 310 1 262 237 0 17 chr13 84334347 84334406 -35410492 - MLT1D LTR MaLR -177 328 271 32 26 0 0 chr13 84334449 84334488 -35410410 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr13 84335178 84335202 -35409696 + AT_rich Low_complexity Low_complexity 1 24 0 1147 267 52 32 chr13 84335434 84335882 -35409016 + MLT1C LTR MaLR 17 467 0 234 231 0 0 chr13 84335971 84336023 -35408875 + (CA)n Simple_repeat Simple_repeat 1 52 0 1615 183 31 10 chr13 84337439 84337728 -35407170 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr13 84338546 84338576 -35406322 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr13 84338820 84338845 -35406053 + AT_rich Low_complexity Low_complexity 1 25 0 4212 136 83 69 chr13 84338929 84340482 -35404416 - pTR5 LTR ERV1 0 2438 69 600 252 0 0 chr13 84340620 84340751 -35404147 + AluJo SINE Alu 1 131 -171 264 200 0 0 chr13 84340760 84340815 -35404083 + GA-rich Low_complexity Low_complexity 2 56 0 948 200 0 6 chr13 84340819 84340979 -35403919 + AluJo SINE Alu 134 292 -20 1920 176 45 3 chr13 84341589 84341924 -35402974 - LTR69 LTR ERVL -1 587 239 833 158 0 15 chr13 84346640 84346773 -35398125 + FLAM_C SINE Alu 1 131 -2 241 235 37 49 chr13 84346896 84346977 -35397921 - MIR SINE MIR -26 236 157 542 325 118 20 chr13 84346985 84347188 -35397710 + MIR SINE MIR 16 238 -24 241 261 45 80 chr13 84347219 84347307 -35397591 - MIR SINE MIR -106 156 72 23 33 0 0 chr13 84347384 84347414 -35397484 + AT_rich Low_complexity Low_complexity 1 30 0 1663 147 27 24 chr13 84347426 84347718 -35397180 + AluJo SINE Alu 9 301 -11 22 0 0 0 chr13 84349646 84349668 -35395230 + AT_rich Low_complexity Low_complexity 1 22 0 1466 224 103 0 chr13 84349816 84350174 -35394724 - MSTD LTR MaLR -1 395 1 402 39 0 0 chr13 84350330 84350382 -35394516 + (CA)n Simple_repeat Simple_repeat 2 53 0 2806 152 15 0 chr13 84350386 84350852 -35394046 - Tigger1 DNA MER2_type -132 2286 1814 416 165 188 0 chr13 84350853 84350938 -35393960 - Tigger1 DNA MER2_type -2317 101 1 478 374 4 28 chr13 84352768 84352941 -35391957 - MIR SINE MIR -2 260 93 2568 124 42 24 chr13 84352941 84353367 -35391531 + MER57B LTR ERV1 1 434 0 478 374 4 28 chr13 84353367 84353442 -35391456 - MIR SINE MIR -169 93 18 1742 185 62 43 chr13 84353668 84354085 -35390813 + MSTB1 LTR MaLR 1 425 -7 2037 130 0 3 chr13 84354591 84354891 -35390007 - AluSg SINE Alu -11 299 1 27 0 0 0 chr13 84355356 84355383 -35389515 + AT_rich Low_complexity Low_complexity 1 27 0 232 233 17 0 chr13 84355465 84355525 -35389373 + (ATG)n Simple_repeat Simple_repeat 1 61 0 453 158 0 0 chr13 84357318 84357400 -35387498 + CT-rich Low_complexity Low_complexity 3 84 0 189 261 22 0 chr13 84357477 84357523 -35387375 - MIR SINE MIR -6 256 210 1163 283 28 44 chr13 84357592 84358093 -35386805 + L1ME3A LINE L1 5478 5970 -200 1833 134 42 0 chr13 84358098 84358381 -35386517 + AluSx SINE Alu 1 295 -17 4020 171 3 3 chr13 84358482 84359199 -35385699 - L1MA4 LINE L1 -2 6298 5582 269 282 339 11 chr13 84360465 84360639 -35384259 + MIR SINE MIR 15 245 -17 31148 110 15 55 chr13 84361405 84364520 -35380378 + L1PA7 LINE L1 13 2724 -3430 2134 114 10 0 chr13 84364520 84364819 -35380079 + AluY SINE Alu 1 302 -9 31148 110 15 55 chr13 84364819 84368107 -35376791 + L1PA7 LINE L1 2724 6143 -11 5389 266 54 25 chr13 84368469 84370481 -35374417 - ERVL LTR ERVL -3604 2160 23 300 53 0 0 chr13 84370567 84370605 -35374293 + (GA)n Simple_repeat Simple_repeat 1 38 0 278 260 21 10 chr13 84370711 84370807 -35374091 + (TA)n Simple_repeat Simple_repeat 2 98 0 22 70 0 0 chr13 84370888 84370931 -35373967 + AT_rich Low_complexity Low_complexity 1 43 0 218 189 11 33 chr13 84371941 84372031 -35372867 + (TA)n Simple_repeat Simple_repeat 1 88 0 409 344 83 52 chr13 84372110 84372569 -35372329 + L1ME LINE L1 5258 5730 -391 236 30 30 0 chr13 84372758 84372791 -35372107 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr13 84374386 84374408 -35370490 + AT_rich Low_complexity Low_complexity 1 22 0 258 179 0 0 chr13 84375881 84375937 -35368961 + (CA)n Simple_repeat Simple_repeat 1 56 0 1406 171 24 0 chr13 84375937 84376189 -35368709 - Tigger2 DNA MER2_type 0 2718 2461 3795 170 9 52 chr13 84376246 84377023 -35367875 - Tigger2 DNA MER2_type -1973 745 2 31 0 0 0 chr13 84377044 84377075 -35367823 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 84377595 84377621 -35367277 + AT_rich Low_complexity Low_complexity 1 26 0 265 89 0 0 chr13 84378057 84378102 -35366796 + L1MA3 LINE L1 6261 6305 0 371 305 43 48 chr13 84378652 84378839 -35366059 - L2 LINE L2 0 3313 3128 190 409 27 13 chr13 84378956 84379105 -35365793 - L2 LINE L2 -360 2954 2804 6015 52 0 1 chr13 84379149 84379901 -35364997 + L1PA5 LINE L1 5402 6152 -2 252 0 0 0 chr13 84379924 84379952 -35364946 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 351 0 0 0 chr13 84379963 84380002 -35364896 + (TG)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chr13 84380020 84380042 -35364856 + (GA)n Simple_repeat Simple_repeat 1 22 0 381 329 169 4 chr13 84380259 84380490 -35364408 - L2 LINE L2 -1086 2228 1960 25 51 0 0 chr13 84380500 84380539 -35364359 + AT_rich Low_complexity Low_complexity 1 39 0 42 36 0 0 chr13 84380907 84380963 -35363935 + AT_rich Low_complexity Low_complexity 1 56 0 261 228 0 0 chr13 84381923 84381980 -35362918 - MER34C LTR ERV1 -465 120 64 2926 179 128 17 chr13 84382667 84383317 -35361581 + MER72 LTR ERV1 1 722 0 456 252 72 0 chr13 84383830 84383941 -35360957 - MER93b-int LTR ERV1 -7289 248 130 699 229 120 86 chr13 84384062 84384412 -35360486 - MER93b LTR ERV1 0 373 12 330 229 89 37 chr13 84384529 84384743 -35360155 - L1MEc LINE L1 -3722 2493 2269 394 261 98 20 chr13 84384762 84384915 -35359983 - L1MEc LINE L1 -4109 2287 2123 189 171 0 0 chr13 84385095 84385130 -35359768 + CT-rich Low_complexity Low_complexity 2 36 0 181 269 60 77 chr13 84385432 84385614 -35359284 + L2 LINE L2 2653 2831 -483 1163 205 8 20 chr13 84385656 84385905 -35358993 - AluJo SINE Alu -66 246 1 29 28 0 0 chr13 84386572 84386608 -35358290 + AT_rich Low_complexity Low_complexity 1 36 0 456 257 49 77 chr13 84388026 84388209 -35356689 + LTR31 LTR ERV1 127 304 -315 225 94 0 0 chr13 84388212 84388244 -35356654 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 494 246 68 82 chr13 84388351 84388571 -35356327 + LTR31 LTR ERV1 378 604 -9 2142 111 0 0 chr13 84389064 84389352 -35355546 + AluSc SINE Alu 1 288 -21 323 190 40 70 chr13 84389530 84389630 -35355268 + LTR29 LTR ERV1 1 97 -525 * 996 207 133 28 chr13 84389599 84389936 -35354962 + MER39 LTR ERV1 257 682 -25 2397 81 0 3 chr13 84390133 84390443 -35354455 - AluY SINE Alu -2 309 1 35 31 0 31 chr13 84390591 84390613 -35354285 + AT_rich Low_complexity Low_complexity 1 22 -40 2069 120 0 0 chr13 84390613 84390932 -35353966 - AluSx SINE Alu 0 319 1 35 31 0 31 chr13 84390932 84390972 -35353926 + AT_rich Low_complexity Low_complexity 22 62 0 545 183 9 0 chr13 84391003 84391118 -35353780 - L1MA4A LINE L1 0 6303 6188 2474 124 20 25 chr13 84391218 84391613 -35353285 + MER57B LTR ERV1 42 434 0 1742 185 62 43 chr13 84391914 84392331 -35352567 + MSTB1 LTR MaLR 1 425 -7 2025 133 0 3 chr13 84392837 84393137 -35351761 - AluSg SINE Alu -11 299 1 35 31 0 31 chr13 84393285 84393307 -35351591 + AT_rich Low_complexity Low_complexity 1 22 -40 2090 120 0 0 chr13 84393307 84393626 -35351272 - AluSx SINE Alu 0 319 1 35 31 0 31 chr13 84393626 84393666 -35351232 + AT_rich Low_complexity Low_complexity 22 62 0 5230 128 11 9 chr13 84393693 84394541 -35350357 - L1MA4A LINE L1 0 6303 5455 2976 148 36 23 chr13 84394686 84395241 -35349657 + MER34B LTR ERV1 1 562 -3 303 71 0 0 chr13 84395515 84395557 -35349341 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 277 303 0 0 chr13 84396522 84396588 -35348310 + MER34 LTR ERV1 1 66 -476 195 42 0 0 chr13 84396688 84396712 -35348186 + (T)n Simple_repeat Simple_repeat 1 24 0 459 194 29 0 chr13 84396759 84396862 -35348036 + LTR48 LTR ERV1 379 484 -303 525 136 23 98 chr13 84397139 84397271 -35347627 - LTR48 LTR ERV1 -488 299 178 1710 179 108 11 chr13 84397271 84397371 -35347527 - MER61C LTR ERV1 0 434 345 186 43 0 0 chr13 84397371 84397394 -35347504 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 1710 179 108 11 chr13 84397394 84397693 -35347205 - MER61C LTR ERV1 -89 345 7 474 195 119 17 chr13 84397727 84397845 -35347053 - LTR48 LTR ERV1 -657 130 1 264 181 84 24 chr13 84397904 84397987 -35346911 + MLT1J1 LTR MaLR 358 445 -1 336 318 23 23 chr13 84397988 84398120 -35346778 - L1ME3A LINE L1 -249 5921 5790 2584 150 60 28 chr13 84398215 84398783 -35346115 + LTR60 LTR ERV1 1 586 0 378 229 115 78 chr13 84398945 84399043 -35345855 + L1M4 LINE L1 2950 3043 -3103 2139 64 0 18 chr13 84399043 84399362 -35345536 + AluY SINE Alu 7 320 0 378 229 115 78 chr13 84399362 84399453 -35345445 + L1M4 LINE L1 3043 3148 -2998 1847 147 4 0 chr13 84399507 84399820 -35345078 + AluSg SINE Alu 1 314 0 2214 50 0 0 chr13 84400698 84400960 -35343938 + AluY SINE Alu 43 304 -7 33 56 0 0 chr13 84401554 84401608 -35343290 + AT_rich Low_complexity Low_complexity 1 54 0 344 260 0 0 chr13 84401692 84401765 -35343133 + Tigger2 DNA MER2_type 1 73 -2645 22 56 0 0 chr13 84404260 84404296 -35340602 + AT_rich Low_complexity Low_complexity 1 36 0 851 274 73 41 chr13 84404972 84405869 -35339029 - L1MCc LINE L1 -5061 1361 47 226 312 135 42 chr13 84406952 84407189 -35337709 + Charlie8 DNA MER1_type 3 261 -2156 227 356 8 53 chr13 84407586 84407718 -35337180 + L2 LINE L2 2928 3053 -219 408 351 95 31 chr13 84407783 84408108 -35336790 - L2 LINE L2 -130 3183 2838 1125 249 97 77 chr13 84408703 84409259 -35335639 - MLT1E LTR MaLR 0 593 1 7227 218 39 68 chr13 84410153 84410508 -35334390 - L1MC1 LINE L1 -37 6576 6212 240 57 491 0 chr13 84410508 84410561 -35334337 - MADE1 DNA Mariner 0 80 2 7227 218 39 68 chr13 84410561 84413512 -35331386 - L1MC1 LINE L1 -401 6212 3341 1782 166 0 7 chr13 84413512 84413822 -35331076 + AluSx SINE Alu 1 308 0 7227 218 39 68 chr13 84413822 84414220 -35330678 - L1MC1 LINE L1 -3272 3341 2933 1452 177 71 17 chr13 84414305 84414717 -35330181 - L1MC1 LINE L1 -3947 2479 2112 809 336 49 21 chr13 84414729 84415154 -35329744 + L1M3d LINE L1 4 440 -5451 666 240 16 26 chr13 84415144 84415336 -35329562 + L1MB1 LINE L1 5884 6073 -95 * 2065 96 7 0 chr13 84415987 84416268 -35328630 - AluY SINE Alu -25 286 4 902 171 19 44 chr13 84416472 84416677 -35328221 + L1MB1 LINE L1 5969 6168 0 479 261 115 6 chr13 84416893 84417058 -35327840 - MIR SINE MIR -2 260 78 3238 224 52 30 chr13 84417411 84417477 -35327421 - L1MB8 LINE L1 -6 6172 6109 722 191 8 0 chr13 84417477 84417608 -35327290 + FLAM_A SINE Alu 2 133 0 3238 224 52 30 chr13 84417608 84418925 -35325973 - L1MB8 LINE L1 -69 6109 4764 370 320 40 0 chr13 84419979 84420104 -35324794 - MIR SINE MIR -96 166 37 24 67 0 0 chr13 84420280 84420325 -35324573 + AT_rich Low_complexity Low_complexity 1 45 0 816 212 71 41 chr13 84421287 84421556 -35323342 - L1MB8 LINE L1 -1542 4604 4328 * 7152 219 60 11 chr13 84421541 84424581 -35320317 - L1PBb LINE L1 -2029 4833 1592 198 71 0 0 chr13 84424581 84424609 -35320289 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7152 219 60 11 chr13 84424609 84424809 -35320089 - L1PBb LINE L1 -5270 1592 1403 455 279 26 13 chr13 84424838 84424992 -35319906 - L1PBb LINE L1 -6705 158 3 22 0 0 0 chr13 84424994 84425016 -35319882 + AT_rich Low_complexity Low_complexity 1 22 0 2197 244 55 23 chr13 84425016 84425766 -35319132 - MER63C DNA MER1_type -150 780 7 189 211 0 0 chr13 84426583 84426635 -35318263 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 158 0 0 chr13 84428117 84428155 -35316743 + T-rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr13 84428589 84428613 -35316285 + AT_rich Low_complexity Low_complexity 1 24 0 29 78 0 0 chr13 84428714 84428778 -35316120 + AT_rich Low_complexity Low_complexity 1 64 0 1707 216 10 51 chr13 84428783 84429194 -35315704 + MSTD LTR MaLR 1 394 -2 1432 203 38 7 chr13 84429217 84429507 -35315391 + AluJo SINE Alu 1 299 -13 201 74 0 0 chr13 84430364 84430391 -35314507 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr13 84430569 84430607 -35314291 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 84430938 84430966 -35313932 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 84431351 84431373 -35313525 + AT_rich Low_complexity Low_complexity 1 22 0 493 326 168 18 chr13 84431799 84432128 -35312770 - LTR16A LTR ERVL -5 446 73 365 311 98 0 chr13 84432242 84432374 -35312524 + LTR16A LTR ERVL 300 444 -6 303 331 57 48 chr13 84432429 84432888 -35312010 + ERVL LTR ERVL 4875 5337 -427 26 50 0 0 chr13 84433083 84433123 -35311775 + AT_rich Low_complexity Low_complexity 1 40 0 13491 148 20 30 chr13 84433187 84435629 -35309269 + Tigger1 DNA MER2_type 1 2417 -1 1639 147 104 23 chr13 84435670 84435839 -35309059 - THE1C LTR MaLR -1 374 220 303 28 0 0 chr13 84435839 84435875 -35309023 + (GA)n Simple_repeat Simple_repeat 1 36 0 1639 147 104 23 chr13 84435875 84436051 -35308847 - THE1C LTR MaLR -155 220 1 247 287 133 88 chr13 84436080 84436502 -35308396 + HAL1 LINE L1 1273 1713 -794 480 35 0 0 chr13 84436864 84436922 -35307976 - L1PA3 LINE L1 -14 6141 6084 1860 271 81 34 chr13 84437356 84438237 -35306661 + L1MCa LINE L1 3 866 -5179 396 229 235 0 chr13 84438235 84438405 -35306493 + L1M4 LINE L1 3625 3834 -2312 * 1868 243 25 59 chr13 84438462 84439136 -35305762 - L1MCb LINE L1 -4895 1150 500 1103 271 22 28 chr13 84439149 84439681 -35305217 - L1MCa LINE L1 -5817 609 4 28 0 0 0 chr13 84439752 84439780 -35305118 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 84440336 84440358 -35304540 + AT_rich Low_complexity Low_complexity 1 22 0 903 148 127 5 chr13 84440604 84440793 -35304105 + L1MA2 LINE L1 6093 6304 0 184 302 19 0 chr13 84440805 84440858 -35304040 - L2 LINE L2 -2350 964 911 304 235 118 0 chr13 84441204 84441323 -35303575 + L1MCa LINE L1 83 215 -6211 21 71 0 0 chr13 84441448 84441490 -35303408 + AT_rich Low_complexity Low_complexity 1 42 0 897 126 0 0 chr13 84441975 84442110 -35302788 - L1MA2 LINE L1 -633 5671 5537 3331 122 8 6 chr13 84442118 84442643 -35302255 + L1MA2 LINE L1 5679 6204 -100 24 32 0 0 chr13 84442892 84442923 -35301975 + AT_rich Low_complexity Low_complexity 1 31 0 180 378 51 32 chr13 84443190 84443346 -35301552 + MIR SINE MIR 2 160 -102 420 313 45 23 chr13 84443361 84443537 -35301361 - MIR SINE MIR -81 181 2 193 337 90 74 chr13 84443881 84444246 -35300652 - L2 LINE L2 -726 2588 2218 209 289 0 0 chr13 84445229 84445281 -35299617 + GA-rich Low_complexity Low_complexity 2 53 0 1294 202 73 118 chr13 84445393 84445927 -35298971 - MLT1E1 LTR MaLR -8 646 137 644 237 15 0 chr13 84446379 84446510 -35298388 - MER5A DNA MER1_type -39 150 18 645 268 118 37 chr13 84447548 84447794 -35297104 - L2 LINE L2 -352 2962 2697 2166 120 0 7 chr13 84449246 84449554 -35295344 + AluSx SINE Alu 1 306 -6 264 30 0 0 chr13 84449958 84449991 -35294907 + (TG)n Simple_repeat Simple_repeat 2 34 0 1129 294 77 31 chr13 84450896 84451413 -35293485 - MLT1H1 LTR MaLR -8 547 7 2051 173 54 29 chr13 84451922 84452439 -35292459 + MLT2A2 LTR ERVL 1 551 -3 202 371 51 17 chr13 84453151 84453326 -35291572 - L2 LINE L2 0 3313 3133 2881 6 0 0 chr13 84453371 84453688 -35291210 + AluYb8 SINE Alu 1 317 -1 209 340 39 10 chr13 84453721 84453824 -35291074 + L2 LINE L2 3167 3272 0 239 397 5 26 chr13 84454085 84454274 -35290624 - L2 LINE L2 -493 2821 2637 26 30 0 0 chr13 84454868 84454901 -35289997 + AT_rich Low_complexity Low_complexity 1 33 0 258 136 0 0 chr13 84455350 84455394 -35289504 + (CA)n Simple_repeat Simple_repeat 2 45 0 9916 55 13 1 chr13 84455651 84456916 -35287982 - L1P LINE L1 -4289 1857 578 792 61 0 0 chr13 84456883 84456981 -35287917 - L1P LINE L1 -6048 98 1 * 306 321 38 15 chr13 84457508 84457639 -35287259 + MIR SINE MIR 74 207 -55 247 197 53 26 chr13 84457783 84457859 -35287039 + T-rich Low_complexity Low_complexity 2 79 0 22 0 0 0 chr13 84457915 84457937 -35286961 + AT_rich Low_complexity Low_complexity 1 22 0 255 61 0 0 chr13 84459113 84459146 -35285752 + (CA)n Simple_repeat Simple_repeat 2 34 0 373 240 27 87 chr13 84460468 84460618 -35284280 + L1MA2 LINE L1 11 151 -7414 2502 64 0 3 chr13 84460621 84460933 -35283965 - AluY SINE Alu 0 311 1 10329 167 20 21 chr13 84461049 84463917 -35280981 + L1MA2 LINE L1 4639 7508 -215 370 145 0 16 chr13 84463948 84464010 -35280888 - THE1-int LTR MaLR -516 1064 1004 454 165 0 0 chr13 84464233 84464318 -35280580 + L1MA3 LINE L1 6221 6305 0 257 284 187 17 chr13 84465219 84465455 -35279443 - L2 LINE L2 -172 3141 2860 391 245 59 114 chr13 84465895 84466132 -35278766 + L1M4 LINE L1 652 875 -5667 3093 138 90 12 chr13 84466321 84466924 -35277974 + L1MA4 LINE L1 5644 6293 -7 295 113 163 0 chr13 84466931 84467011 -35277887 + L1ME1 LINE L1 5149 5241 -905 1565 272 114 18 chr13 84467059 84467724 -35277174 + L1ME1 LINE L1 5437 6165 -1 656 253 40 30 chr13 84468225 84468423 -35276475 + MER3 DNA MER1_type 2 201 -8 252 370 50 8 chr13 84469810 84469929 -35274969 - MIR SINE MIR -126 136 13 27767 32 8 0 chr13 84470143 84474300 -35270598 - L1PA4 LINE L1 -3 6152 1961 2286 113 0 0 chr13 84474955 84475264 -35269634 + AluSg SINE Alu 1 309 -1 2055 121 3 16 chr13 84476264 84476578 -35268320 + AluSq SINE Alu 1 310 -3 2217 82 0 3 chr13 84476998 84477292 -35267606 - AluY SINE Alu -18 293 1 1320 184 4 43 chr13 84477320 84477597 -35267301 - AluJb SINE Alu -46 266 1 5229 173 40 32 chr13 84477597 84478864 -35266034 + L1MC1 LINE L1 5067 6333 0 184 366 37 30 chr13 84478902 84479036 -35265862 - MIR SINE MIR -116 146 12 1781 20 0 0 chr13 84479588 84479787 -35265111 + AluY SINE Alu 99 297 -14 425 222 156 33 chr13 84479953 84480133 -35264765 - L1M4 LINE L1 -1102 5044 4843 186 43 0 0 chr13 84480794 84480817 -35264081 + (A)n Simple_repeat Simple_repeat 1 23 0 1200 235 77 29 chr13 84481496 84481874 -35263024 - MSTD LTR MaLR 0 396 1 258 314 0 0 chr13 84481891 84481961 -35262937 - MIR3 SINE MIR -46 162 93 25 75 0 0 chr13 84482442 84482495 -35262403 + AT_rich Low_complexity Low_complexity 1 53 0 216 182 0 0 chr13 84483590 84483634 -35261264 + (TA)n Simple_repeat Simple_repeat 1 44 0 201 154 0 0 chr13 84484139 84484178 -35260720 + A-rich Low_complexity Low_complexity 1 39 0 28 61 0 0 chr13 84484308 84484357 -35260541 + AT_rich Low_complexity Low_complexity 1 49 0 1275 177 4 17 chr13 84485195 84485432 -35259466 - Tigger5 DNA MER2_type -1 2322 2089 228 323 0 0 chr13 84485451 84485513 -35259385 - Tigger5 DNA MER2_type -2261 62 1 303 274 60 83 chr13 84486530 84486698 -35258200 - L1MC5 LINE L1 -807 7154 6991 189 0 0 0 chr13 84486748 84486769 -35258129 + (CA)n Simple_repeat Simple_repeat 1 21 0 297 283 10 10 chr13 84486787 84486886 -35258012 - L1MC4 LINE L1 -1011 7031 6933 795 261 19 14 chr13 84486920 84487127 -35257771 - MLT1A2 LTR MaLR 0 374 167 357 253 105 79 chr13 84487144 84487179 -35257719 - L1ME3A LINE L1 -2 6168 6135 4873 129 18 12 chr13 84487179 84487999 -35256899 + L1MA3 LINE L1 5478 6302 -3 357 253 105 79 chr13 84487999 84488192 -35256706 - L1ME3A LINE L1 -35 6135 5934 716 157 15 8 chr13 84488276 84488410 -35256488 - MLT1A2 LTR MaLR -230 135 1 256 323 80 17 chr13 84488427 84488619 -35256279 - L1MC5 LINE L1 -1067 6741 6590 1204 316 58 5 chr13 84489154 84489325 -35255573 - L1MC5 LINE L1 -1865 5943 5783 180 0 0 0 chr13 84489325 84489345 -35255553 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1204 316 58 5 chr13 84489345 84489588 -35255310 - L1MC5 LINE L1 -2025 5783 5507 1776 187 48 6 chr13 84489993 84490324 -35254574 + MLT1A1 LTR MaLR 21 365 0 1359 235 44 17 chr13 84491506 84491868 -35253030 - MER21B LTR ERV1 -61 802 431 1048 242 139 4 chr13 84491868 84492120 -35252778 - MER21B LTR ERV1 -559 304 19 308 210 12 86 chr13 84492118 84492199 -35252699 - MER21B LTR ERV1 -757 106 32 * 32 43 0 0 chr13 84492337 84492383 -35252515 + AT_rich Low_complexity Low_complexity 1 46 0 759 205 79 37 chr13 84494071 84494261 -35250637 - MER3 DNA MER1_type -8 201 4 381 333 23 23 chr13 84494392 84494566 -35250332 + MIR SINE MIR 3 176 -86 4468 201 14 50 chr13 84494589 84495606 -35249292 - L1MA10 LINE L1 -17 6317 5369 2126 79 3 33 chr13 84495606 84495769 -35249129 - AluY SINE Alu -17 294 143 189 0 0 0 chr13 84495769 84495790 -35249108 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 2126 79 3 33 chr13 84495790 84495929 -35248969 - AluY SINE Alu -168 143 1 4468 201 14 50 chr13 84495929 84496494 -35248404 - L1MA10 LINE L1 -965 5369 4785 22 0 0 0 chr13 84496826 84496848 -35248050 + AT_rich Low_complexity Low_complexity 1 22 0 197 297 31 0 chr13 84498092 84498156 -35246742 - MIR SINE MIR -118 144 79 21 0 0 0 chr13 84498356 84498377 -35246521 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 84499097 84499121 -35245777 + AT_rich Low_complexity Low_complexity 1 24 0 666 246 0 0 chr13 84499623 84499761 -35245137 - MER106B DNA MER1_type -921 138 1 1225 326 68 44 chr13 84499763 84500788 -35244110 + L2 LINE L2 2206 3252 -61 184 151 19 19 chr13 84500914 84500967 -35243931 + GA-rich Low_complexity Low_complexity 2 54 0 222 150 0 0 chr13 84501006 84501046 -35243852 + (TG)n Simple_repeat Simple_repeat 2 41 0 2969 242 81 45 chr13 84501151 84502392 -35242506 + L1MC3 LINE L1 6250 7534 -251 640 121 10 0 chr13 84502397 84502496 -35242402 - L1MA4 LINE L1 -868 5435 5336 * 4252 190 35 4 chr13 84502480 84503301 -35241597 + L1MA4 LINE L1 5414 6260 -40 720 222 81 50 chr13 84503329 84503590 -35241308 + L1MD3 LINE L1 7726 7994 -1 181 326 102 53 chr13 84503591 84503778 -35241120 - L2 LINE L2 -196 3117 2922 24 0 0 0 chr13 84503916 84503940 -35240958 + AT_rich Low_complexity Low_complexity 1 24 0 2205 86 0 0 chr13 84503940 84504231 -35240667 - AluSq SINE Alu -22 291 1 864 208 7 119 chr13 84504979 84505248 -35239650 + AluJo SINE Alu 6 244 -68 501 287 15 36 chr13 84505253 84505448 -35239450 - L1MD3 LINE L1 -82 7913 7723 360 181 0 0 chr13 84505445 84505517 -35239381 - L1MA4A LINE L1 -23 6280 6209 * 40 21 0 0 chr13 84505534 84505581 -35239317 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr13 84505714 84505746 -35239152 + AT_rich Low_complexity Low_complexity 1 32 0 2397 79 0 3 chr13 84506350 84506655 -35238243 - AluSq SINE Alu -8 305 2 243 263 18 0 chr13 84506729 84506786 -35238112 - MIR SINE MIR -64 144 87 22 0 0 0 chr13 84507087 84507109 -35237789 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr13 84507184 84507238 -35237660 + AT_rich Low_complexity Low_complexity 1 54 0 1973 90 3 63 chr13 84507460 84507809 -35237089 + AluSg SINE Alu 1 331 0 273 182 0 0 chr13 84508466 84508521 -35236377 + (CA)n Simple_repeat Simple_repeat 2 56 0 667 244 10 21 chr13 84508857 84509050 -35235848 + L1M4 LINE L1 4724 4914 -1232 21 0 0 0 chr13 84509094 84509115 -35235783 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr13 84509281 84509318 -35235580 + AT_rich Low_complexity Low_complexity 1 37 0 255 228 0 18 chr13 84510315 84510372 -35234526 + CT-rich Low_complexity Low_complexity 1 56 0 24 67 0 0 chr13 84511534 84511579 -35233319 + AT_rich Low_complexity Low_complexity 1 45 0 407 365 36 6 chr13 84512236 84512403 -35232495 + MIR3 SINE MIR 34 205 -3 22 0 0 0 chr13 84512414 84512436 -35232462 + AT_rich Low_complexity Low_complexity 1 22 0 1497 162 51 9 chr13 84512796 84513111 -35231787 - L1MA6 LINE L1 -4 6296 5969 1324 197 25 0 chr13 84513124 84513398 -35231500 - L1MA6 LINE L1 -862 5284 5004 835 181 10 78 chr13 84513399 84513604 -35231294 + L1MA6 LINE L1 4812 5002 -1144 409 168 7 0 chr13 84513893 84513974 -35230924 + L1MA6 LINE L1 5213 5297 -849 1234 172 25 8 chr13 84513981 84514219 -35230679 + L1MA6 LINE L1 5972 6213 -87 234 243 153 36 chr13 84515207 84515318 -35229580 + L2 LINE L2 3172 3295 -18 193 56 28 28 chr13 84515527 84515563 -35229335 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 27 0 0 0 chr13 84515575 84515602 -35229296 + AT_rich Low_complexity Low_complexity 1 27 0 297 75 0 0 chr13 84515796 84515836 -35229062 + (CA)n Simple_repeat Simple_repeat 1 40 0 1439 240 117 71 chr13 84518110 84518802 -35226096 + MER50 LTR ERV1 10 733 -1 576 227 32 13 chr13 84519840 84519994 -35224904 + MER103 DNA DNA 3 159 -7 3501 107 29 27 chr13 84520012 84520269 -35224629 - LTR9B LTR ERV1 -83 561 306 2180 101 0 3 chr13 84520269 84520565 -35224333 - AluSq SINE Alu -18 295 1 3501 107 29 27 chr13 84520565 84520867 -35224031 - LTR9B LTR ERV1 -338 306 1 16252 103 21 21 chr13 84520868 84522656 -35222242 - HUERS-P3b LTR ERV1 -7 7411 5544 2409 69 0 7 chr13 84522656 84522960 -35221938 + AluY SINE Alu 1 302 -9 16252 103 21 21 chr13 84522960 84523787 -35221111 - HUERS-P3b LTR ERV1 -1874 5544 4719 1018 90 0 78 chr13 84523786 84523884 -35221014 - HUERS-P3b LTR ERV1 -3544 3874 3792 * 2093 109 7 0 chr13 84523884 84524194 -35220704 + AluSp SINE Alu 1 312 0 1018 90 0 78 chr13 84524194 84524260 -35220638 - HUERS-P3b LTR ERV1 -3626 3792 3722 3657 94 6 25 chr13 84524263 84524792 -35220106 - HUERS-P3b LTR ERV1 -3827 3591 3073 2181 184 31 3 chr13 84524792 84525183 -35219715 + LTR8 LTR ERV1 1 402 -289 678 88 0 0 chr13 84525183 84525274 -35219624 - HUERS-P3b LTR ERV1 -4763 2655 2565 * 4958 111 15 2 chr13 84525271 84526670 -35218228 - HUERS-P3b LTR ERV1 -5126 2292 747 802 103 62 21 chr13 84526676 84526821 -35218077 - HUERS-P3b LTR ERV1 -6859 559 409 334 208 62 62 chr13 84526824 84526920 -35217978 - HUERS-P3b LTR ERV1 -7322 96 1 1386 115 0 0 chr13 84526920 84527120 -35217778 - LTR9B LTR ERV1 0 644 445 1700 119 12 4 chr13 84527180 84527431 -35217467 - AluSx SINE Alu -16 296 44 2325 161 16 30 chr13 84527678 84528114 -35216784 + Tigger2a DNA MER2_type 5 434 0 230 264 42 28 chr13 84528526 84528598 -35216300 - L2 LINE L2 -5 3308 3236 4194 85 29 34 chr13 84528913 84529964 -35214934 + MER11A LTR ERVK 1 1266 0 26 30 0 0 chr13 84531408 84531441 -35213457 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr13 84531869 84531896 -35213002 + AT_rich Low_complexity Low_complexity 1 27 0 387 0 0 0 chr13 84531910 84531953 -35212945 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 472 276 71 18 chr13 84532197 84532367 -35212531 + MLT1I LTR MaLR 1 179 -230 234 91 0 0 chr13 84533174 84533207 -35211691 + (CA)n Simple_repeat Simple_repeat 2 34 0 514 289 32 21 chr13 84533434 84533624 -35211274 + MIR SINE MIR 31 222 -40 2594 212 23 64 chr13 84533672 84534362 -35210536 + LTR8 LTR ERV1 30 691 0 238 306 87 52 chr13 84535232 84535461 -35209437 - L2 LINE L2 -463 2851 2615 2066 272 90 36 chr13 84536730 84537645 -35207253 - L1MC4 LINE L1 -375 7667 6704 911 208 14 5 chr13 84537875 84538082 -35206816 - Tigger7 DNA MER2_type -1 2586 2378 * 986 232 5 10 chr13 84538077 84538275 -35206623 - Tigger7 DNA MER2_type -536 197 1 2862 198 16 24 chr13 84538307 84538942 -35205956 + L1MA7 LINE L1 4702 5331 -815 3718 186 42 3 chr13 84539297 84540090 -35204808 + L1PA15 LINE L1 1532 2367 -4430 * 6257 204 13 3 chr13 84540088 84541583 -35203315 + L1PA15 LINE L1 3871 6805 -11 2643 7 0 0 chr13 84541603 84541891 -35203007 - AluYa5 SINE Alu -11 300 13 4708 163 34 16 chr13 84541891 84542798 -35202100 + L1MA7 LINE L1 5336 6258 -33 24 0 0 0 chr13 84542809 84542833 -35202065 + AT_rich Low_complexity Low_complexity 1 24 0 1847 226 65 36 chr13 84542993 84543493 -35201405 + MER67D LTR ERV1 1 466 0 314 250 68 0 chr13 84543554 84543642 -35201256 - L1MC5 LINE L1 -595 7366 7273 245 229 0 0 chr13 84543673 84543721 -35201177 + MLT1B LTR MaLR 6 53 -414 497 270 141 41 chr13 84543723 84544106 -35200792 - MER57A LTR ERV1 0 403 16 * 1323 228 0 40 chr13 84544105 84544452 -35200446 + MLT1B LTR MaLR 58 390 0 366 301 18 0 chr13 84544573 84544686 -35200212 + MER5B DNA MER1_type 17 131 -47 335 345 0 0 chr13 84545024 84545140 -35199758 + CT-rich Low_complexity Low_complexity 4 119 0 713 364 79 10 chr13 84545868 84546363 -35198535 + L2 LINE L2 888 1416 -1898 359 393 42 0 chr13 84546595 84546786 -35198112 + MIR3 SINE MIR 2 200 -8 2466 199 11 2 chr13 84546819 84547296 -35197602 + MER31A LTR ERV1 1 481 -4 24 32 0 0 chr13 84548090 84548121 -35196777 + AT_rich Low_complexity Low_complexity 1 31 0 689 228 0 49 chr13 84548238 84548400 -35196498 + FRAM SINE Alu 1 153 -23 1361 221 42 87 chr13 84548591 84549005 -35195893 - MLT1D LTR MaLR 0 505 119 2235 113 0 0 chr13 84549005 84549298 -35195600 - AluSc SINE Alu -16 293 1 1361 221 42 87 chr13 84549298 84549412 -35195486 - MLT1D LTR MaLR -386 119 1 3100 168 44 24 chr13 84549459 84549878 -35195020 + LTR26 LTR ERV1 1 410 -193 2345 114 48 0 chr13 84549878 84550236 -35194662 - THE1C LTR MaLR 0 375 1 8039 134 123 6 chr13 84550239 84551650 -35193248 - THE1C-int LTR MaLR -3 1577 2 2529 125 0 11 chr13 84551651 84552028 -35192870 - THE1C LTR MaLR 0 375 3 3100 168 44 24 chr13 84552028 84552191 -35192707 + LTR26 LTR ERV1 410 601 -2 1093 293 157 21 chr13 84552238 84552760 -35192138 + MLT1E LTR MaLR 1 593 0 1415 199 147 24 chr13 84553383 84553764 -35191134 - MSTA LTR MaLR 0 428 1 9473 148 11 32 chr13 84553769 84555375 -35189523 - MSTA-int LTR MaLR -5 1575 4 1351 167 130 60 chr13 84555382 84555729 -35189169 - THE1C LTR MaLR -4 371 1 1304 287 95 73 chr13 84555938 84557185 -35187713 - L1M4 LINE L1 -5264 1278 5 2380 88 0 0 chr13 84558756 84559064 -35185834 + AluY SINE Alu 1 308 -3 367 231 90 37 chr13 84559289 84559423 -35185475 + MIR SINE MIR 81 221 -41 2297 101 3 0 chr13 84559536 84559842 -35185056 - AluSp SINE Alu -6 307 1 24 0 0 0 chr13 84560552 84560576 -35184322 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 84562714 84562742 -35182156 + AT_rich Low_complexity Low_complexity 1 28 0 1513 225 0 6 chr13 84562747 84563058 -35181840 + AluJb SINE Alu 1 309 -3 10700 20 0 1 chr13 84563135 84565158 -35179740 - L1PA3 LINE L1 0 6155 4139 4802 38 9 0 chr13 84565159 84565742 -35179156 + L1PA3 LINE L1 3561 4148 -1998 1572 163 6 70 chr13 84566226 84566539 -35178359 + AluJo SINE Alu 3 295 -17 2856 180 49 16 chr13 84568655 84569282 -35175616 - L1MC1 LINE L1 -13 6320 5673 230 240 93 13 chr13 84569526 84569601 -35175297 + MIR SINE MIR 118 198 -64 23 0 0 0 chr13 84570870 84570893 -35174005 + AT_rich Low_complexity Low_complexity 1 23 0 213 214 43 0 chr13 84571531 84571601 -35173297 + (TA)n Simple_repeat Simple_repeat 1 73 0 365 309 60 24 chr13 84573421 84573589 -35171309 + MLT1H1 LTR MaLR 382 555 0 284 305 116 32 chr13 84574544 84574734 -35170164 - MLT1K LTR MaLR -8 580 375 297 296 88 16 chr13 84574792 84574917 -35169981 - MER5B DNA MER1_type -11 167 34 1901 102 11 11 chr13 84575629 84575893 -35169005 - AluSx SINE Alu -15 297 34 278 250 17 0 chr13 84576715 84576775 -35168123 + MER5A DNA MER1_type 128 188 -1 306 0 0 0 chr13 84577117 84577151 -35167747 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr13 84577380 84577402 -35167496 + AT_rich Low_complexity Low_complexity 1 22 0 371 229 193 67 chr13 84577597 84577899 -35166999 + L1MD3 LINE L1 7414 7858 -66 198 0 0 0 chr13 84577920 84577942 -35166956 + (T)n Simple_repeat Simple_repeat 1 22 0 24 67 0 0 chr13 84578202 84578247 -35166651 + AT_rich Low_complexity Low_complexity 1 45 0 1923 5 0 0 chr13 84578334 84578544 -35166354 - AluYb8 SINE Alu -12 306 97 184 366 37 30 chr13 84579094 84579228 -35165670 + MIR SINE MIR 12 146 -116 5229 173 40 32 chr13 84579266 84580533 -35164365 - L1MC1 LINE L1 0 6333 5067 1320 184 4 43 chr13 84580533 84580810 -35164088 + AluJb SINE Alu 1 266 -46 2546 40 0 3 chr13 84580838 84581140 -35163758 + AluY SINE Alu 1 301 -10 415 224 162 34 chr13 84581306 84581485 -35163413 - L1MC1 LINE L1 -1102 5044 4843 1224 233 77 29 chr13 84582847 84583225 -35161673 - MSTD LTR MaLR 0 396 1 258 314 0 0 chr13 84583242 84583312 -35161586 - MIR3 SINE MIR -46 162 93 25 75 0 0 chr13 84583793 84583846 -35161052 + AT_rich Low_complexity Low_complexity 1 53 0 483 118 0 0 chr13 84584941 84585017 -35159881 + (TA)n Simple_repeat Simple_repeat 1 76 0 201 154 0 0 chr13 84585522 84585561 -35159337 + A-rich Low_complexity Low_complexity 1 39 0 28 61 0 0 chr13 84585691 84585740 -35159158 + AT_rich Low_complexity Low_complexity 1 49 0 1595 159 68 41 chr13 84585831 84586196 -35158702 - THE1C LTR MaLR 0 375 1 624 226 68 73 chr13 84589197 84589431 -35155467 + MER89-int LTR ERV1 4593 4825 -111 1658 199 38 0 chr13 84589818 84590159 -35154739 - L1MB1 LINE L1 -383 5785 5432 1710 162 70 6 chr13 84590159 84590501 -35154397 + L1MB1 LINE L1 5795 6161 -7 971 135 0 0 chr13 84590564 84590705 -35154193 + AluJo SINE Alu 1 141 -171 222 320 82 0 chr13 84593564 84593661 -35151237 - MIR SINE MIR -111 151 47 233 197 26 120 chr13 84593775 84593892 -35151006 + L1M4 LINE L1 2849 2954 -3192 2829 186 56 2 chr13 84593895 84594453 -35150445 - MER67C LTR ERV1 0 710 123 338 298 51 31 chr13 84594532 84594824 -35150074 + L1M4 LINE L1 2974 3271 -2875 226 47 70 23 chr13 84594877 84594920 -35149978 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 300 342 66 13 chr13 84594925 84595077 -35149821 + L1M4 LINE L1 3364 3523 -2623 245 139 0 0 chr13 84595107 84595143 -35149755 + L1M4 LINE L1 3608 3643 -2503 * 359 230 141 0 chr13 84595138 84595273 -35149625 + L1M4 LINE L1 3875 4028 -2118 1704 199 4 61 chr13 84595958 84596445 -35148453 + MER89 LTR ERV1 3 559 0 346 257 122 46 chr13 84598535 84598772 -35146126 - L1M3 LINE L1 -771 5375 5121 243 0 0 0 chr13 84598808 84598835 -35146063 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 637 299 93 56 chr13 84598894 84599234 -35145664 - L1ME3A LINE L1 -33 6137 5776 1999 138 3 10 chr13 84599234 84599539 -35145359 - AluSg SINE Alu -7 303 1 637 299 93 56 chr13 84599539 84599630 -35145268 - L1ME3A LINE L1 -394 5776 5690 255 304 0 0 chr13 84599702 84599771 -35145127 + HERVL40 LTR ERVL 5444 5512 -18 1224 282 59 43 chr13 84599786 84600297 -35144601 + LTR40a LTR ERVL 1 519 0 432 314 78 42 chr13 84600301 84600607 -35144291 - L1MEd LINE L1 -5069 1050 734 323 182 13 0 chr13 84601388 84601465 -35143433 + (TA)n Simple_repeat Simple_repeat 1 78 0 351 396 23 20 chr13 84602082 84602385 -35142513 + HERVL LTR ERVL 3024 3327 -2327 2155 181 39 2 chr13 84602416 84602830 -35142068 + MSTB1 LTR MaLR 3 431 -1 388 346 7 0 chr13 84603735 84603888 -35141010 + HERVL LTR ERVL 4441 4594 -1170 424 356 114 23 chr13 84603938 84604550 -35140348 + HERVL LTR ERVL 4776 5443 -321 248 242 22 33 chr13 84604566 84604657 -35140241 + L1MC4 LINE L1 6614 6703 -1339 241 214 0 82 chr13 84604659 84604757 -35140141 - L1MC4 LINE L1 -1339 6703 6614 273 98 0 0 chr13 84604757 84604798 -35140100 + (TA)n Simple_repeat Simple_repeat 1 41 0 365 310 0 9 chr13 84605533 84605646 -35139252 + LTR67 LTR ERVL 441 552 -5 1176 226 98 18 chr13 84605798 84606125 -35138773 + MLT1A1 LTR MaLR 13 365 0 21 0 0 0 chr13 84606873 84606894 -35138004 + AT_rich Low_complexity Low_complexity 1 21 0 238 326 136 61 chr13 84607558 84608052 -35136846 - MLT1K LTR MaLR -14 574 44 263 49 24 0 chr13 84608465 84608506 -35136392 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 22 70 0 0 chr13 84608670 84608713 -35136185 + AT_rich Low_complexity Low_complexity 1 43 0 2087 103 17 3 chr13 84608883 84609173 -35135725 + AluSg SINE Alu 1 294 -16 27 0 0 0 chr13 84609289 84609316 -35135582 + AT_rich Low_complexity Low_complexity 1 27 0 2217 82 10 0 chr13 84610561 84610855 -35134043 + AluY SINE Alu 1 297 -14 21 57 0 0 chr13 84611252 84611287 -35133611 + AT_rich Low_complexity Low_complexity 1 35 0 714 211 65 15 chr13 84611604 84611922 -35132976 + MER31B LTR ERV1 15 543 0 224 394 63 6 chr13 84612004 84612179 -35132719 - MIR3 SINE MIR -7 201 17 1576 171 24 21 chr13 84612541 84612828 -35132070 + AluJo SINE Alu 1 288 -24 1248 246 97 41 chr13 84613127 84613591 -35131307 + MLT1D LTR MaLR 3 492 -13 231 214 0 0 chr13 84613906 84613948 -35130950 + GA-rich Low_complexity Low_complexity 3 44 0 890 215 87 0 chr13 84614537 84614732 -35130166 + MER6A DNA MER2_type 1 212 -393 890 209 40 0 chr13 84614725 84614902 -35129996 + MER6A DNA MER2_type 261 184 -421 3571 110 42 0 chr13 84614905 84615425 -35129473 + MER57-int LTR ERV1 6420 6961 -576 2165 169 28 19 chr13 84615464 84615895 -35129003 + MER6A DNA MER2_type 171 605 0 311 323 28 60 chr13 84615896 84616215 -35128683 + HAL1 LINE L1 1498 1806 -701 2214 124 11 35 chr13 84616325 84616696 -35128202 - THE1B LTR MaLR -2 362 1 228 255 0 0 chr13 84616787 84616834 -35128064 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 23 68 0 0 chr13 84617235 84617279 -35127619 + AT_rich Low_complexity Low_complexity 1 44 0 477 0 0 0 chr13 84617996 84618049 -35126849 + (TA)n Simple_repeat Simple_repeat 1 53 0 247 310 240 10 chr13 84618054 84618254 -35126644 + L2 LINE L2 1961 2206 -1108 289 127 42 28 chr13 84618255 84618326 -35126572 - L1MA7 LINE L1 -1 6290 6219 758 327 80 68 chr13 84618326 84619087 -35125811 + L2 LINE L2 2188 2957 -357 650 303 45 10 chr13 84621537 84621735 -35123163 - L2 LINE L2 -698 2616 2412 22 35 0 0 chr13 84622093 84622122 -35122776 + AT_rich Low_complexity Low_complexity 1 29 0 852 178 66 14 chr13 84622242 84622455 -35122443 + L1MA8 LINE L1 6066 6289 -2 398 247 179 25 chr13 84623489 84623751 -35121147 - L2 LINE L2 -326 2987 2700 1893 150 35 13 chr13 84623879 84624253 -35120645 + L1MA2 LINE L1 5922 6303 -1 368 94 0 0 chr13 84624376 84624429 -35120469 + Alu SINE Alu 248 300 -2 26 64 0 0 chr13 84625505 84625552 -35119346 + AT_rich Low_complexity Low_complexity 1 47 0 300 286 11 22 chr13 84626205 84626296 -35118602 - L2 LINE L2 0 3272 3183 225 0 0 0 chr13 84626569 84626594 -35118304 + (TG)n Simple_repeat Simple_repeat 2 26 0 483 111 0 0 chr13 84626861 84626933 -35117965 - L1PA10 LINE L1 -6 6162 6091 4195 93 5 0 chr13 84626935 84627516 -35117382 + L1PA10 LINE L1 5377 5960 -208 732 233 85 21 chr13 84627581 84627770 -35117128 - MER20 DNA MER1_type -15 204 4 183 345 0 0 chr13 84628573 84628631 -35116267 + MIR3 SINE MIR 105 162 -46 23 33 0 0 chr13 84629867 84629897 -35115001 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr13 84631380 84631415 -35113483 + AT_rich Low_complexity Low_complexity 1 35 0 17445 101 12 1 chr13 84631426 84634796 -35110102 - L1PA7 LINE L1 -15 6139 2745 11562 134 5 12 chr13 84634800 84636722 -35108176 + L1PA7 LINE L1 826 2734 -3412 28 0 0 0 chr13 84637367 84637395 -35107503 + AT_rich Low_complexity Low_complexity 1 28 0 2262 110 3 0 chr13 84637666 84637976 -35106922 + AluSp SINE Alu 3 313 0 189 0 0 0 chr13 84638473 84638494 -35106404 + (TG)n Simple_repeat Simple_repeat 2 22 0 281 167 0 0 chr13 84639241 84639295 -35105603 - MLT1J LTR MaLR -35 476 423 23 0 0 0 chr13 84639864 84639887 -35105011 + AT_rich Low_complexity Low_complexity 1 23 0 1762 335 41 22 chr13 84640401 84641253 -35103645 - ERVL LTR ERVL -1304 4460 3593 610 294 80 20 chr13 84641260 84641461 -35103437 - ERVL LTR ERVL -2544 3220 3008 3711 314 66 43 chr13 84641532 84643625 -35101273 - ERVL LTR ERVL -2884 2880 740 624 278 0 46 chr13 84643707 84643973 -35100925 - MLT1E1-int LTR MaLR -1000 371 1 1435 252 83 47 chr13 84643975 84644547 -35100351 - MLT1E1 LTR MaLR -2 652 1 1075 350 28 9 chr13 84644578 84645041 -35099857 - MLT2F LTR ERVL -191 472 1 249 254 16 0 chr13 84645863 84645926 -35098972 + (TA)n Simple_repeat Simple_repeat 1 64 0 1410 112 20 0 chr13 84648103 84648299 -35096599 + AluSc SINE Alu 98 297 -12 8121 166 25 24 chr13 84649127 84650611 -35094287 + Tigger1 DNA MER2_type 2 1486 -932 21 36 0 0 chr13 84650830 84650858 -35094040 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 84651067 84651091 -35093807 + AT_rich Low_complexity Low_complexity 1 24 0 383 133 0 0 chr13 84651381 84651441 -35093457 + MER53 DNA DNA 2 61 -128 227 149 21 0 chr13 84651402 84651449 -35093449 - MER53 DNA DNA -12 177 130 * 194 154 51 26 chr13 84651631 84651709 -35093189 + (CATATA)n Simple_repeat Simple_repeat 1 80 0 181 338 128 14 chr13 84652126 84652274 -35092624 - MIR SINE MIR -17 245 81 234 174 0 0 chr13 84652622 84652668 -35092230 + (TA)n Simple_repeat Simple_repeat 1 46 0 32 43 0 0 chr13 84652729 84652775 -35092123 + AT_rich Low_complexity Low_complexity 1 46 0 2012 119 3 3 chr13 84653774 84654067 -35090831 - AluSp SINE Alu -20 293 1 192 77 0 0 chr13 84654736 84654762 -35090136 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1966 164 54 25 chr13 84655713 84656067 -35088831 - THE1B LTR MaLR 0 364 1 239 218 0 0 chr13 84656310 84656365 -35088533 - L1MA2 LINE L1 0 6304 6250 21 57 0 0 chr13 84656425 84656460 -35088438 + AT_rich Low_complexity Low_complexity 1 35 0 1927 115 7 3 chr13 84657038 84657324 -35087574 - AluSc SINE Alu -9 300 14 314 341 47 0 chr13 84657589 84657718 -35087180 + L1MC4 LINE L1 6571 6705 -1337 182 217 0 17 chr13 84658575 84658635 -35086263 + GA-rich Low_complexity Low_complexity 3 61 0 7398 192 49 3 chr13 84658733 84660922 -35083976 - L1MA9 LINE L1 -486 6786 4495 2155 248 60 43 chr13 84660922 84661384 -35083514 - L1MA9 LINE L1 -4545 2492 2039 1621 149 40 4 chr13 84661384 84661690 -35083208 - AluSx SINE Alu 0 316 1 2155 248 60 43 chr13 84661690 84662638 -35082260 - L1MA9 LINE L1 -4998 2039 15 309 51 0 0 chr13 84662666 84662705 -35082193 + (TG)n Simple_repeat Simple_repeat 2 40 0 1819 250 54 52 chr13 84663175 84663786 -35081112 - LTR9 LTR ERV1 0 612 1 27 0 0 0 chr13 84664630 84664657 -35080241 + AT_rich Low_complexity Low_complexity 1 27 0 494 213 65 58 chr13 84665023 84665178 -35079720 + FRAM SINE Alu 2 157 -19 2306 93 0 7 chr13 84666002 84666303 -35078595 - AluSq SINE Alu -14 299 1 558 344 8 16 chr13 84666541 84666794 -35078104 + L2 LINE L2 1575 1825 -1489 304 292 43 77 chr13 84666825 84667034 -35077864 + L2 LINE L2 3112 3313 0 181 356 18 54 chr13 84667058 84667280 -35077618 + L2 LINE L2 2499 2712 -602 255 283 47 28 chr13 84668726 84668832 -35076066 - L2 LINE L2 -2 3311 3204 4386 188 55 23 chr13 84669163 84670461 -35074437 - L1PA16 LINE L1 -21 6145 4797 25 0 0 0 chr13 84670577 84670602 -35074296 + AT_rich Low_complexity Low_complexity 1 25 0 233 286 0 87 chr13 84670678 84670804 -35074094 - L1P5 LINE L1 -423 5728 5614 293 316 35 18 chr13 84671266 84671437 -35073461 - L3b LINE CR1 -307 1276 1103 5529 72 35 52 chr13 84671944 84672966 -35071932 + SVA Other Other 1 868 -592 1521 108 13 76 chr13 84672979 84673442 -35071456 + SVA Other Other 433 866 -520 6489 58 20 44 chr13 84673462 84674439 -35070459 + SVA Other Other 433 1386 0 257 262 16 0 chr13 84674574 84674635 -35070263 - AluJ/FLAM SINE Alu -239 63 2 385 248 95 22 chr13 84674778 84675146 -35069752 - L1MC/D LINE L1 -946 5618 5463 * 1210 195 55 50 chr13 84675120 84675536 -35069362 - L1MC/D LINE L1 -3952 2612 2195 253 316 77 0 chr13 84675645 84675762 -35069136 - L1MC/D LINE L1 -5710 854 729 1014 289 92 10 chr13 84675792 84676207 -35068691 - L1MC/D LINE L1 -5596 449 1 188 33 0 33 chr13 84676486 84676516 -35068382 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr13 84676748 84676769 -35068129 + AT_rich Low_complexity Low_complexity 1 21 0 38 39 0 0 chr13 84677356 84677408 -35067490 + AT_rich Low_complexity Low_complexity 1 52 0 243 278 0 0 chr13 84677796 84677868 -35067030 + MLT1I LTR MaLR 318 389 -20 476 286 48 95 chr13 84678036 84678435 -35066463 + L1M4 LINE L1 2890 3269 -2877 1819 135 15 12 chr13 84678768 84679094 -35065804 - L1MA3 LINE L1 0 6305 5979 1067 126 63 5 chr13 84679095 84679286 -35065612 + L1MA3 LINE L1 5785 5986 -319 23 0 0 0 chr13 84679372 84679395 -35065503 + AT_rich Low_complexity Low_complexity 1 23 0 6781 76 1 4 chr13 84679418 84680890 -35064008 - L1PA8 LINE L1 0 6172 4703 5919 120 38 1 chr13 84680893 84681825 -35063073 + L1PA8 LINE L1 3730 4695 -1451 22 0 0 0 chr13 84681983 84682005 -35062893 + AT_rich Low_complexity Low_complexity 1 22 0 311 191 0 0 chr13 84682264 84682311 -35062587 + G-rich Low_complexity Low_complexity 1 47 0 213 39 0 0 chr13 84682311 84682337 -35062561 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr13 84682704 84682726 -35062172 + AT_rich Low_complexity Low_complexity 1 22 0 528 299 113 39 chr13 84682987 84683448 -35061450 + L1MC4 LINE L1 6975 7469 -573 227 290 55 82 chr13 84683459 84683897 -35061001 + L1MC5 LINE L1 7312 7737 -224 22 0 0 0 chr13 84683981 84684003 -35060895 + AT_rich Low_complexity Low_complexity 1 22 0 1389 303 16 27 chr13 84684915 84685466 -35059432 + MLT1H LTR MaLR 5 549 0 743 350 86 28 chr13 84685730 84686195 -35058703 - LTR33 LTR ERVL -19 502 11 2605 191 73 2 chr13 84686413 84686878 -35058020 + MER54B LTR ERVL 1 498 -295 225 0 0 0 chr13 84686891 84686916 -35057982 + (TG)n Simple_repeat Simple_repeat 1 25 0 1729 167 13 19 chr13 84686921 84687246 -35057652 + MER54B LTR ERVL 468 790 -3 192 40 0 0 chr13 84687555 84687580 -35057318 + (CA)n Simple_repeat Simple_repeat 1 25 0 341 350 15 10 chr13 84687894 84688091 -35056807 - L2 LINE L2 -899 2415 2218 30 0 0 0 chr13 84688151 84688181 -35056717 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr13 84688798 84688833 -35056065 + AT_rich Low_complexity Low_complexity 1 35 0 186 224 0 0 chr13 84688904 84688953 -35055945 + CT-rich Low_complexity Low_complexity 3 51 0 381 300 42 74 chr13 84689035 84689229 -35055669 + MIR SINE MIR 6 200 -62 553 278 89 35 chr13 84689254 84689513 -35055385 - MLT1K LTR MaLR -28 560 288 226 233 31 16 chr13 84689513 84689642 -35055256 + GA-rich Low_complexity Low_complexity 2 132 0 259 261 91 0 chr13 84690571 84690659 -35054239 - L2 LINE L2 -1015 2299 2204 222 347 99 0 chr13 84690687 84690808 -35054090 - MIR SINE MIR -61 201 69 429 269 40 26 chr13 84691457 84691640 -35053258 + MLT1J2 LTR MaLR 264 446 0 26 0 0 0 chr13 84692505 84692531 -35052367 + AT_rich Low_complexity Low_complexity 1 26 0 338 321 0 0 chr13 84692865 84692949 -35051949 - MER5A DNA MER1_type 0 189 106 679 164 16 16 chr13 84692976 84693098 -35051800 - FRAM SINE Alu -32 144 23 876 299 55 39 chr13 84693195 84694045 -35050853 - L1MEc LINE L1 -3393 2822 1996 247 396 7 7 chr13 84694205 84694349 -35050549 - L1MEc LINE L1 -6076 320 177 4102 156 23 25 chr13 84694570 84695357 -35049541 - LTR1 LTR ERV1 0 785 1 30 0 0 0 chr13 84695626 84695656 -35049242 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr13 84695757 84695808 -35049090 + AT_rich Low_complexity Low_complexity 1 51 0 1908 175 25 49 chr13 84696484 84697036 -35047862 + MER51A LTR ERV1 1 634 0 409 298 22 44 chr13 84698317 84698459 -35046439 - MIR SINE MIR 0 262 123 2115 108 0 3 chr13 84698459 84698780 -35046118 + AluY SINE Alu 1 311 0 409 298 22 44 chr13 84698780 84698818 -35046080 - MIR SINE MIR -139 123 86 243 354 0 0 chr13 84698901 84699020 -35045878 + CT-rich Low_complexity Low_complexity 4 192 0 28 91 0 0 chr13 84699801 84699878 -35045020 + AT_rich Low_complexity Low_complexity 1 77 0 203 133 0 0 chr13 84700918 84700948 -35043950 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr13 84701767 84701802 -35043096 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr13 84701972 84702001 -35042897 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr13 84702070 84702110 -35042788 + AT_rich Low_complexity Low_complexity 1 40 0 384 218 91 27 chr13 84702438 84702548 -35042350 - MER63 DNA MER1_type -93 743 1 341 364 102 41 chr13 84702828 84703122 -35041776 + L2 LINE L2 2654 2965 -349 613 331 78 59 chr13 84703420 84704037 -35040861 + L2 LINE L2 2203 2838 -476 4006 120 29 23 chr13 84704037 84704697 -35040201 - MER4A LTR ERV1 0 664 1 613 331 78 59 chr13 84704697 84704838 -35040060 + L2 LINE L2 2838 2975 -339 1585 254 55 5 chr13 84704907 84705329 -35039569 - MLT1C LTR MaLR -24 443 1 297 258 84 78 chr13 84705386 84705553 -35039345 + L2 LINE L2 3113 3280 -33 33 43 0 0 chr13 84705996 84706043 -35038855 + AT_rich Low_complexity Low_complexity 1 47 0 1030 217 5 0 chr13 84706462 84706679 -35038219 - L1 LINE L1 -1804 4342 4125 2324 79 0 7 chr13 84706836 84707140 -35037758 - AluY SINE Alu -9 302 1 996 126 52 16 chr13 84707158 84707349 -35037549 - L1MA3 LINE L1 -1 6304 6107 3011 172 43 15 chr13 84707413 84708000 -35036898 + MER6A DNA MER2_type 2 604 -1 216 100 0 25 chr13 84708754 84708794 -35036104 + (CCG)n Simple_repeat Simple_repeat 3 41 0 255 245 0 0 chr13 84709028 84709122 -35035776 + GA-rich Low_complexity Low_complexity 1 94 0 23 33 0 0 chr13 84709475 84709505 -35035393 + AT_rich Low_complexity Low_complexity 1 30 0 678 207 0 0 chr13 84709914 84710054 -35034844 + L1MA6 LINE L1 6154 6293 -7 256 321 44 58 chr13 84711070 84711207 -35033691 + MIR SINE MIR 7 141 -121 230 385 0 0 chr13 84711242 84711338 -35033560 + MIR SINE MIR 1 96 -166 561 42 96 12 chr13 84712917 84713083 -35031815 + (TA)n Simple_repeat Simple_repeat 1 180 0 1937 287 62 31 chr13 84713108 84714350 -35030548 - L1M4 LINE L1 -816 5330 4051 247 221 95 63 chr13 84714715 84714810 -35030088 - LTR48 LTR ERV1 -527 260 163 695 315 34 15 chr13 84714885 84715209 -35029689 - L1M4 LINE L1 -2084 4062 3733 * 6455 130 15 19 chr13 84715199 84716531 -35028367 + L1MA3 LINE L1 4977 6302 -3 23 54 0 0 chr13 84716531 84716568 -35028330 + AT_rich Low_complexity Low_complexity 1 37 0 832 256 47 56 chr13 84716668 84717190 -35027708 - LTR28 LTR ERV1 -10 498 1 354 320 102 35 chr13 84717441 84717725 -35027173 - L1M4 LINE L1 -2789 3357 3055 1507 180 76 0 chr13 84717988 84718277 -35026621 + AluJb SINE Alu 1 311 -1 26 0 0 0 chr13 84718370 84718396 -35026502 + AT_rich Low_complexity Low_complexity 1 26 0 345 280 90 38 chr13 84718823 84719112 -35025786 - HAL1 LINE L1 -888 1619 1316 2258 76 0 10 chr13 84719659 84719960 -35024938 - AluY SINE Alu -13 298 1 22 0 0 0 chr13 84721012 84721034 -35023864 + AT_rich Low_complexity Low_complexity 1 22 0 231 388 10 10 chr13 84721072 84721170 -35023728 - MIR SINE MIR -128 134 37 33 66 0 0 chr13 84721474 84721535 -35023363 + AT_rich Low_complexity Low_complexity 1 61 0 2698 206 12 2 chr13 84722402 84722980 -35021918 + L1MC1 LINE L1 5731 6314 -19 226 50 50 0 chr13 84723409 84723449 -35021449 + (TA)n Simple_repeat Simple_repeat 2 43 0 27 49 0 0 chr13 84724886 84724927 -35019971 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr13 84725182 84725210 -35019688 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 84725545 84725566 -35019332 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr13 84725869 84725896 -35019002 + (CCCTAA)n Simple_repeat Simple_repeat 4 30 0 23 33 0 0 chr13 84726240 84726270 -35018628 + AT_rich Low_complexity Low_complexity 1 30 0 35 63 0 0 chr13 84726392 84726455 -35018443 + AT_rich Low_complexity Low_complexity 1 63 0 998 119 0 0 chr13 84726728 84726862 -35018036 - AluSq/x SINE Alu -176 136 3 1493 192 21 4 chr13 84726870 84727151 -35017747 - AluJo SINE Alu -21 291 6 10358 244 34 45 chr13 84727153 84727736 -35017162 - L1PA12 LINE L1 -1150 6434 5846 1744 159 88 25 chr13 84727736 84728089 -35016809 + THE1C LTR MaLR 1 375 0 10358 244 34 45 chr13 84728089 84731821 -35013077 - L1PA12 LINE L1 -1738 5846 2182 349 307 0 0 chr13 84732097 84732198 -35012700 - L1PA12 LINE L1 -5397 2184 2084 626 359 44 34 chr13 84732375 84732938 -35011960 - L1PA12 LINE L1 -6218 1356 788 1717 132 18 7 chr13 84732971 84733252 -35011646 - AluJb SINE Alu -18 294 11 255 283 47 28 chr13 84734370 84734476 -35010422 - L2 LINE L2 -2 3311 3204 25 31 0 0 chr13 84734764 84734796 -35010102 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr13 84735622 84735652 -35009246 + AT_rich Low_complexity Low_complexity 1 30 0 201 128 85 0 chr13 84735847 84735894 -35009004 + (TTAAA)n Simple_repeat Simple_repeat 3 53 0 315 0 0 0 chr13 84736119 84736154 -35008744 + (TA)n Simple_repeat Simple_repeat 2 36 0 29 28 0 0 chr13 84736285 84736321 -35008577 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 84736378 84736400 -35008498 + AT_rich Low_complexity Low_complexity 1 22 0 263 250 0 0 chr13 84736562 84736618 -35008280 - Tigger5 DNA MER2_type -3 2320 2265 376 336 84 49 chr13 84736747 84737297 -35007601 + L2 LINE L2 2434 3081 -191 215 348 177 25 chr13 84737813 84737971 -35006927 - L2 LINE L2 -505 2809 2628 322 94 31 0 chr13 84739086 84739150 -35005748 + (TA)n Simple_repeat Simple_repeat 1 66 0 644 191 9 0 chr13 84739188 84739293 -35005605 + FLAM_A SINE Alu 17 122 -20 438 235 51 0 chr13 84739491 84739589 -35005309 - FLAM_C SINE Alu -16 127 25 22 70 0 0 chr13 84739902 84739945 -35004953 + AT_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chr13 84740920 84740960 -35003938 + AT_rich Low_complexity Low_complexity 1 40 0 689 222 141 27 chr13 84741454 84741639 -35003259 + MER58 DNA MER1_type 2 207 -134 25 75 0 0 chr13 84742224 84742277 -35002621 + AT_rich Low_complexity Low_complexity 1 53 0 2105 114 3 10 chr13 84742697 84743003 -35001895 - AluSp SINE Alu -9 304 1 348 394 55 25 chr13 84743583 84743946 -35000952 - L1MEc LINE L1 -5953 443 70 27 49 0 0 chr13 84743986 84744027 -35000871 + AT_rich Low_complexity Low_complexity 1 41 0 993 254 295 39 chr13 84744114 84744364 -35000534 + MER52A LTR ERV1 652 837 -918 2448 61 0 6 chr13 84744364 84744675 -35000223 + AluY SINE Alu 1 309 -2 993 254 295 39 chr13 84744675 84744932 -34999966 + MER52A LTR ERV1 837 1289 -466 355 269 310 37 chr13 84745065 84745471 -34999427 + MER52A LTR ERV1 1221 1737 -18 201 175 0 0 chr13 84745937 84745977 -34998921 + CT-rich Low_complexity Low_complexity 4 43 0 2345 54 0 7 chr13 84747650 84747947 -34996951 + AluY SINE Alu 1 295 -16 19103 108 7 5 chr13 84748110 84751803 -34993095 - L1PA7 LINE L1 -6 6463 2762 3350 125 17 35 chr13 84751804 84752339 -34992559 - L1PA7 LINE L1 -5928 533 9 23 33 0 0 chr13 84752415 84752445 -34992453 + AT_rich Low_complexity Low_complexity 1 30 0 1299 236 78 47 chr13 84754236 84754723 -34990175 + MLT1D LTR MaLR 1 502 -3 1759 83 0 4 chr13 84756160 84756389 -34988509 - AluSq SINE Alu -3 310 83 3836 223 75 11 chr13 84756600 84757578 -34987320 - Tigger6a DNA MER2_type -30 1053 14 22 0 0 0 chr13 84757673 84757695 -34987203 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr13 84759034 84759057 -34985841 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 511 162 10 20 chr13 84759539 84759638 -34985260 + MER4A LTR ERV1 1 98 -566 1606 124 48 80 chr13 84759638 84759995 -34984903 + MER4A LTR ERV1 261 664 0 21 57 0 0 chr13 84760941 84760976 -34983922 + AT_rich Low_complexity Low_complexity 1 35 0 524 311 94 4 chr13 84762046 84762323 -34982575 + L1ME LINE L1 396 697 -5373 2030 165 55 36 chr13 84762337 84762874 -34982024 - MLT2A2 LTR ERVL 0 554 1 1997 128 3 13 chr13 84764186 84764491 -34980407 + AluSx SINE Alu 1 302 -10 2282 160 48 12 chr13 84765490 84765903 -34978995 + MSTA LTR MaLR 1 428 0 669 313 47 55 chr13 84766295 84767002 -34977896 - L1ME LINE L1 -4261 2000 1300 34263 35 4 0 chr13 84767024 84772001 -34972897 + L1PA4 LINE L1 1160 6152 -3 207 0 0 0 chr13 84772005 84772028 -34972870 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 604 313 42 10 chr13 84772078 84772546 -34972352 - L1ME LINE L1 -4888 1090 715 2245 149 8 6 chr13 84772556 84772919 -34971979 + THE1B LTR MaLR 1 364 0 875 140 14 0 chr13 84772919 84773062 -34971836 + THE1B-int LTR MaLR 1 145 -1435 2993 122 53 13 chr13 84773062 84773536 -34971362 + THE1B-int LTR MaLR 1088 1580 0 2317 143 6 8 chr13 84773537 84773901 -34970997 + THE1B LTR MaLR 2 364 0 25 0 0 0 chr13 84775236 84775261 -34969637 + AT_rich Low_complexity Low_complexity 1 25 0 1465 239 26 23 chr13 84775375 84775726 -34969172 + MLT1A1 LTR MaLR 4 355 -10 26 64 0 0 chr13 84776121 84776168 -34968730 + AT_rich Low_complexity Low_complexity 1 47 0 2021 143 43 6 chr13 84776224 84776575 -34968323 - THE1B LTR MaLR 0 364 1 9962 132 11 29 chr13 84776580 84778182 -34966716 - THE1B-int LTR MaLR -6 1574 1 2278 135 22 0 chr13 84778182 84778538 -34966360 - THE1B LTR MaLR 0 364 1 438 129 0 0 chr13 84778619 84778689 -34966209 - MER92A LTR ERV1 0 412 343 1558 234 78 14 chr13 84778707 84779016 -34965882 + MSTD LTR MaLR 15 352 -44 531 0 0 0 chr13 84779016 84779075 -34965823 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1558 234 78 14 chr13 84779075 84779124 -34965774 + MSTD LTR MaLR 352 396 0 752 313 42 24 chr13 84779124 84779458 -34965440 - MER92A LTR ERV1 -72 340 1 586 144 0 0 chr13 84779522 84779619 -34965279 + AluS SINE Alu 1 97 -215 403 229 46 13 chr13 84780516 84780669 -34964229 + (TA)n Simple_repeat Simple_repeat 1 158 0 46 33 0 0 chr13 84780826 84780886 -34964012 + AT_rich Low_complexity Low_complexity 1 60 0 936 217 86 12 chr13 84782563 84782807 -34962091 - MLT1B LTR MaLR 0 390 129 389 196 93 56 chr13 84783025 84783132 -34961766 - MLT1B LTR MaLR -275 115 5 191 356 0 0 chr13 84783420 84783479 -34961419 + L2 LINE L2 2453 2511 -803 284 328 179 20 chr13 84783570 84783872 -34961026 + Charlie7 DNA MER1_type 128 477 -2135 5335 148 6 1 chr13 84784001 84784853 -34960045 - L1PA16 LINE L1 -1 6165 5310 4979 209 24 12 chr13 84784854 84786054 -34958844 + L1PA16 LINE L1 4095 5308 -838 2017 174 0 64 chr13 84786072 84786388 -34958510 + MER47B DNA MER2_type 1 336 -1987 1755 177 0 0 chr13 84786388 84786670 -34958228 + AluSx SINE Alu 1 282 -30 261 0 0 0 chr13 84786671 84786700 -34958198 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 2017 174 0 64 chr13 84786700 84786788 -34958110 + MER47B DNA MER2_type 335 381 -37 40 49 0 0 chr13 84786790 84786851 -34958047 + AT_rich Low_complexity Low_complexity 1 61 0 244 359 70 0 chr13 84787022 84787164 -34957734 + L2 LINE L2 2607 2758 -556 27 29 0 0 chr13 84787970 84788004 -34956894 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 84791050 84791074 -34953824 + AT_rich Low_complexity Low_complexity 1 24 0 426 53 0 0 chr13 84792234 84792291 -34952607 + (CA)n Simple_repeat Simple_repeat 1 57 0 2849 199 83 27 chr13 84792483 84793133 -34951765 - L1MB8 LINE L1 0 6178 5475 1490 199 17 14 chr13 84793133 84793430 -34951468 - AluJb SINE Alu -14 298 1 2849 199 83 27 chr13 84793430 84793559 -34951339 - L1MB8 LINE L1 -703 5475 5355 1208 170 46 6 chr13 84793577 84793900 -34950998 + L1MA9 LINE L1 5858 6290 -22 27 0 0 0 chr13 84793900 84793927 -34950971 + AT_rich Low_complexity Low_complexity 1 27 0 3218 195 97 28 chr13 84793943 84794106 -34950792 - L1MC2 LINE L1 -2 6342 6192 3949 141 22 0 chr13 84794106 84794732 -34950166 - L1PA15 LINE L1 -2 6163 5524 3218 195 97 28 chr13 84794732 84795385 -34949513 - L1MC2 LINE L1 -152 6192 5470 243 239 0 28 chr13 84795432 84795503 -34949395 + L1ME4a LINE L1 5960 6028 -93 869 284 26 26 chr13 84796201 84796550 -34948348 - L1MC4 LINE L1 0 8042 7694 1428 111 0 10 chr13 84796553 84796761 -34948137 - L1PA15 LINE L1 0 6165 5960 2761 256 48 3 chr13 84796789 84797712 -34947186 - L1MC2 LINE L1 -841 5305 4342 33 80 0 0 chr13 84797822 84797897 -34947001 + AT_rich Low_complexity Low_complexity 1 75 0 22 0 0 0 chr13 84798030 84798052 -34946846 + AT_rich Low_complexity Low_complexity 1 22 0 370 339 33 16 chr13 84798682 84799093 -34945805 - LTR40b LTR ERVL -24 438 1 755 331 29 11 chr13 84799099 84799380 -34945518 - HERVL40 LTR ERVL -9 5521 5236 947 304 3 14 chr13 84799975 84800268 -34944630 - HERVL40 LTR ERVL -2118 3412 3123 * 1643 289 6 29 chr13 84800259 84800737 -34944161 - HERVL40 LTR ERVL -2344 3186 2720 372 347 14 7 chr13 84801332 84801479 -34943419 - HERVL40 LTR ERVL -4815 715 568 258 156 22 0 chr13 84802000 84802045 -34942853 - HERVL40 LTR ERVL -5476 54 9 603 288 41 14 chr13 84802045 84802452 -34942446 - LTR40c LTR ERVL -4 458 1 2097 266 83 73 chr13 84802452 84803371 -34941527 - L1ME3A LINE L1 -92 6576 5668 195 69 0 0 chr13 84803371 84803400 -34941498 + (CA)n Simple_repeat Simple_repeat 1 29 0 2097 266 83 73 chr13 84803400 84804790 -34940108 - L1ME3A LINE L1 -1000 5668 4245 5915 120 38 1 chr13 84804876 84805808 -34939090 - L1PA8 LINE L1 -1451 4695 3730 6688 75 4 21 chr13 84805811 84807297 -34937601 + L1PA8 LINE L1 4703 6172 0 23 0 0 0 chr13 84807320 84807343 -34937555 + AT_rich Low_complexity Low_complexity 1 23 0 1085 124 6 6 chr13 84807444 84807621 -34937277 - L1MA3 LINE L1 -344 5961 5785 1841 138 12 12 chr13 84807622 84807949 -34936949 + L1MA3 LINE L1 5979 6305 0 483 286 48 95 chr13 84808282 84808681 -34936217 - L1ME3A LINE L1 -2877 3767 3388 243 278 0 0 chr13 84808849 84808921 -34935977 - MLT1I LTR MaLR -20 389 318 38 39 0 0 chr13 84809309 84809361 -34935537 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr13 84809948 84809969 -34934929 + AT_rich Low_complexity Low_complexity 1 21 0 188 33 0 33 chr13 84810201 84810231 -34934667 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1060 294 87 9 chr13 84810509 84810947 -34933951 + L1ME4a LINE L1 1 472 -5573 253 316 77 0 chr13 84810954 84811071 -34933827 + L1ME4a LINE L1 729 854 -5710 1237 192 55 50 chr13 84811180 84811596 -34933302 + L1ME4a LINE L1 2195 2612 -3952 366 240 97 24 chr13 84811570 84811938 -34932960 + L1ME4a LINE L1 5463 5618 -946 * 257 262 16 0 chr13 84812081 84812142 -34932756 + AluJ/FLAM SINE Alu 2 63 -239 293 316 35 18 chr13 84812721 84812892 -34932006 + L3b LINE CR1 1103 1276 -307 346 286 72 89 chr13 84813349 84813709 -34931189 + L1ME4a LINE L1 6028 6381 -158 429 269 40 26 chr13 84814396 84814579 -34930319 + MLT1J2 LTR MaLR 264 446 0 26 0 0 0 chr13 84815444 84815470 -34929428 + AT_rich Low_complexity Low_complexity 1 26 0 338 321 0 0 chr13 84815804 84815888 -34929010 - MER5A DNA MER1_type 0 189 106 679 164 16 16 chr13 84815915 84816037 -34928861 - FRAM SINE Alu -32 144 23 1335 283 47 71 chr13 84816134 84818116 -34926782 - L1ME LINE L1 -3393 3251 1247 235 392 14 7 chr13 84818507 84818650 -34926248 - L1ME LINE L1 -6076 749 606 2386 40 0 20 chr13 84819028 84819325 -34925573 + AluY SINE Alu 1 291 -20 34 24 0 0 chr13 84819352 84819393 -34925505 + AT_rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr13 84819603 84819642 -34925256 + AT_rich Low_complexity Low_complexity 1 39 0 2267 234 54 35 chr13 84820385 84821760 -34923138 - L1MC3 LINE L1 -745 5401 4442 330 356 117 30 chr13 84822427 84822795 -34922103 + L2 LINE L2 2369 2768 -546 212 313 71 9 chr13 84822840 84822952 -34921946 + MIR SINE MIR 59 177 -85 215 203 51 13 chr13 84823235 84823314 -34921584 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 21 36 0 0 chr13 84826002 84826030 -34918868 + AT_rich Low_complexity Low_complexity 1 28 0 262 253 104 35 chr13 84826189 84826391 -34918507 - L1MC5 LINE L1 -33 7928 7713 21 0 0 0 chr13 84826434 84826455 -34918443 + AT_rich Low_complexity Low_complexity 1 21 0 1598 62 5 0 chr13 84827397 84827608 -34917290 + L1PA5 LINE L1 5939 6150 -4 574 290 59 6 chr13 84828846 84829015 -34915883 + MIR SINE MIR 2 179 -83 22 35 0 0 chr13 84830401 84830430 -34914468 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr13 84830624 84830655 -34914243 + AT_rich Low_complexity Low_complexity 1 31 0 358 228 13 0 chr13 84830685 84830764 -34914134 - L1MA7 LINE L1 -855 5479 5400 * 3470 145 37 52 chr13 84830762 84831062 -34913836 + L1MA7 LINE L1 5492 5795 -496 225 0 0 0 chr13 84831062 84831087 -34913811 + (CA)n Simple_repeat Simple_repeat 2 26 0 3470 145 37 52 chr13 84831087 84831512 -34913386 + L1MA7 LINE L1 5795 6206 -85 17032 219 47 44 chr13 84831514 84838214 -34906684 + L1M1 LINE L1 203 6903 -743 4864 135 26 11 chr13 84838251 84839103 -34905795 + L1MA3 LINE L1 5438 6302 -3 24 32 0 0 chr13 84839103 84839134 -34905764 + AT_rich Low_complexity Low_complexity 1 31 0 550 311 23 18 chr13 84839292 84839511 -34905387 - MER58A DNA MER1_type -4 220 1 25 0 0 0 chr13 84840072 84840097 -34904801 + AT_rich Low_complexity Low_complexity 1 25 0 261 297 70 8 chr13 84840176 84840304 -34904594 - MIR SINE MIR -2 260 125 5145 164 53 33 chr13 84840748 84842118 -34902780 + L1PA16 LINE L1 4764 6166 0 1715 88 13 9 chr13 84842786 84843012 -34901886 + AluSc SINE Alu 1 227 -82 23 0 0 0 chr13 84843073 84843096 -34901802 + AT_rich Low_complexity Low_complexity 1 23 0 295 356 14 50 chr13 84843385 84843607 -34901291 - L2 LINE L2 -602 2712 2499 337 317 27 48 chr13 84843631 84843817 -34901081 - L2 LINE L2 0 3313 3132 654 303 18 25 chr13 84843870 84844147 -34900751 - L2 LINE L2 -1489 1825 1551 409 306 7 0 chr13 84844316 84844460 -34900438 - Zaphod DNA AcHobo -27 4004 3860 774 168 0 0 chr13 84844460 84844591 -34900307 + L1MA2 LINE L1 6091 6221 -83 461 164 6 11 chr13 84844623 84844721 -34900177 + L1MA2 LINE L1 6204 6305 0 654 238 66 138 chr13 84844791 84845033 -34899865 - Zaphod DNA AcHobo -731 3300 3042 2124 112 0 3 chr13 84845033 84845348 -34899550 - AluSg SINE Alu 0 314 1 654 238 66 138 chr13 84845348 84846090 -34898808 - Zaphod DNA AcHobo -989 3042 2385 * 1113 287 77 15 chr13 84846059 84846582 -34898316 - Zaphod DNA AcHobo -3249 782 228 243 0 0 0 chr13 84846591 84846618 -34898280 + (TC)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr13 84846617 84846644 -34898254 + (TG)n Simple_repeat Simple_repeat 2 28 0 236 329 12 0 chr13 84846663 84846745 -34898153 - Zaphod DNA AcHobo -3940 91 9 21 0 0 0 chr13 84847133 84847154 -34897744 + AT_rich Low_complexity Low_complexity 1 21 0 2398 48 0 3 chr13 84848945 84849235 -34895663 + AluY SINE Alu 1 289 -22 22 0 0 0 chr13 84850752 84850774 -34894124 + AT_rich Low_complexity Low_complexity 1 22 0 240 111 0 0 chr13 84852409 84852445 -34892453 + (GGA)n Simple_repeat Simple_repeat 3 38 0 24 67 0 0 chr13 84852614 84852659 -34892239 + AT_rich Low_complexity Low_complexity 1 45 0 2479 155 3 0 chr13 84852784 84853530 -34891368 - L1PB1 LINE L1 -550 5601 4854 843 72 44 122 chr13 84853530 84853711 -34891187 + L1PB1 LINE L1 5629 5795 -356 443 118 39 34 chr13 84853713 84853891 -34891007 + (TA)n Simple_repeat Simple_repeat 2 180 0 2148 142 8 8 chr13 84853909 84854282 -34890616 + L1PB1 LINE L1 5776 6148 -3 409 374 60 15 chr13 84854312 84854577 -34890321 - LTR33 LTR ERVL -244 277 1 209 320 10 41 chr13 84854643 84854740 -34890158 + L2 LINE L2 3174 3267 -5 465 336 79 29 chr13 84854754 84855069 -34889829 + L3 LINE CR1 1232 1562 -15 1227 229 34 58 chr13 84856242 84856615 -34888283 - MER39 LTR ERV1 0 707 343 2906 165 65 24 chr13 84856615 84857203 -34887695 - LTR9 LTR ERV1 0 612 1 1227 229 34 58 chr13 84857203 84857240 -34887658 - MER39 LTR ERV1 -364 343 307 295 213 112 101 chr13 84857215 84857384 -34887514 - LTR48B LTR ERV1 -473 171 1 * 1159 198 31 5 chr13 84858027 84858249 -34886649 - AluJo SINE Alu -82 230 3 2068 105 7 14 chr13 84859161 84859457 -34885441 - AluSq SINE Alu -2 311 18 967 238 29 7 chr13 84861584 84861865 -34883033 - L1 LINE L1 -3153 2993 2707 * 2607 146 88 65 chr13 84861857 84862446 -34882452 + L1PB4 LINE L1 5543 6145 -11 30 0 0 0 chr13 84862446 84862476 -34882422 + AT_rich Low_complexity Low_complexity 1 30 0 2438 120 19 16 chr13 84862829 84863197 -34881701 - THE1C LTR MaLR 0 375 7 713 315 178 12 chr13 84863344 84863827 -34881071 - L2 LINE L2 -773 2541 1979 3339 195 48 53 chr13 84863831 84863963 -34880935 + L1MB2 LINE L1 5196 5327 -844 1908 132 60 23 chr13 84863963 84864312 -34880586 - THE1B LTR MaLR 0 364 3 3339 195 48 53 chr13 84864312 84864787 -34880111 + L1MB2 LINE L1 5327 5802 -369 360 0 0 0 chr13 84864787 84864827 -34880071 + (TA)n Simple_repeat Simple_repeat 1 40 0 3339 195 48 53 chr13 84864827 84865142 -34879756 + L1MB2 LINE L1 5802 6117 -54 270 89 22 22 chr13 84865162 84865207 -34879691 + MER4A LTR ERV1 54 98 -566 1632 148 5 74 chr13 84865207 84865578 -34879320 + MER4A LTR ERV1 261 664 0 252 127 32 32 chr13 84865578 84865641 -34879257 + L1MB2 LINE L1 6109 6171 0 574 257 68 55 chr13 84865659 84865896 -34879002 - L2 LINE L2 -1340 1974 1735 1354 133 9 14 chr13 84865923 84866133 -34878765 - THE1B-int LTR MaLR -121 1459 1251 206 228 0 0 chr13 84866148 84866205 -34878693 + (TA)n Simple_repeat Simple_repeat 1 57 0 347 302 182 26 chr13 84866219 84866411 -34878487 - L2 LINE L2 -1678 1636 1415 1249 247 84 52 chr13 84866938 84867436 -34877462 + MER67D LTR ERV1 1 514 0 22 35 0 0 chr13 84867639 84867668 -34877230 + AT_rich Low_complexity Low_complexity 1 29 0 276 130 0 0 chr13 84867849 84867895 -34877003 + (CA)n Simple_repeat Simple_repeat 1 46 0 1084 196 5 5 chr13 84867920 84868129 -34876769 + AluJo SINE Alu 11 219 -93 201 182 0 0 chr13 84868140 84868173 -34876725 + A-rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr13 84868983 84869008 -34875890 + AT_rich Low_complexity Low_complexity 1 25 0 241 298 112 51 chr13 84869242 84869420 -34875478 + MIR SINE MIR 74 262 0 38 0 0 0 chr13 84869548 84869586 -34875312 + AT_rich Low_complexity Low_complexity 1 38 0 2398 55 7 3 chr13 84871234 84871541 -34873357 - AluY SINE Alu -3 308 1 209 284 71 89 chr13 84871609 84871778 -34873120 - L2 LINE L2 -6 3307 3142 1245 129 0 0 chr13 84872554 84872732 -34872166 - AluSg/x SINE Alu -11 301 124 225 0 0 0 chr13 84872937 84872962 -34871936 + (TTTTTA)n Simple_repeat Simple_repeat 2 26 0 287 164 55 5 chr13 84874444 84874534 -34870364 + L1MB1 LINE L1 6078 6175 -2 560 317 100 27 chr13 84875401 84875732 -34869166 + L1M3a LINE L1 1 355 -5600 1747 192 18 3 chr13 84875744 84876083 -34868815 + L1MA9 LINE L1 5481 5824 -488 631 211 14 21 chr13 84876084 84876226 -34868672 + FRAM SINE Alu 1 140 -36 2452 179 10 24 chr13 84876231 84876739 -34868159 + L1MA9 LINE L1 5811 6311 -1 669 274 80 86 chr13 84876976 84877349 -34867549 - HERVL40 LTR ERVL -2603 2927 2557 778 307 38 38 chr13 84877349 84877691 -34867207 - HERVL40 LTR ERVL -3139 2391 2050 * 885 299 47 20 chr13 84877690 84878091 -34866807 - HERVL40 LTR ERVL -3913 1617 1206 825 109 75 54 chr13 84878126 84878273 -34866625 - L1PA8A LINE L1 -2 6129 5980 3307 114 4 8 chr13 84878281 84878790 -34866108 + L1P LINE L1 3533 4039 -2107 495 292 49 43 chr13 84878793 84878978 -34865920 - HERVL40 LTR ERVL -4314 1216 1031 298 269 46 19 chr13 84879217 84879325 -34865573 - HERVL40 LTR ERVL -5410 120 10 497 296 73 8 chr13 84879333 84879793 -34865105 - LTR40a LTR ERVL 0 519 1 319 299 11 0 chr13 84879884 84879971 -34864927 + LTR16A LTR ERVL 234 321 -129 180 0 0 0 chr13 84879971 84879991 -34864907 + (T)n Simple_repeat Simple_repeat 1 20 0 1264 192 7 45 chr13 84880106 84880392 -34864506 - AluJb SINE Alu -4 308 34 556 33 43 11 chr13 84880835 84880927 -34863971 + (TA)n Simple_repeat Simple_repeat 2 96 0 25 51 0 0 chr13 84881332 84881371 -34863527 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr13 84882113 84882141 -34862757 + AT_rich Low_complexity Low_complexity 1 28 0 26 101 0 0 chr13 84883781 84883870 -34861028 + AT_rich Low_complexity Low_complexity 1 89 0 2053 100 0 24 chr13 84883958 84884248 -34860650 - AluSq SINE Alu -30 283 1 411 318 55 41 chr13 84885132 84885352 -34859546 - LTR16C LTR ERVL -24 467 245 284 339 9 9 chr13 84887039 84887148 -34857750 + L2 LINE L2 2283 2391 -923 3421 114 8 76 chr13 84887148 84887743 -34857155 - THE1C-int LTR MaLR -1025 555 1 1575 186 29 37 chr13 84887745 84888121 -34856777 - THE1C LTR MaLR -2 373 1 9221 195 23 14 chr13 84888121 84891262 -34853636 + L1M1 LINE L1 2671 5840 -1725 4339 225 103 105 chr13 84891262 84893021 -34851877 + MER52A LTR ERV1 1 1755 0 4165 178 33 34 chr13 84893022 84894280 -34850618 + L1M1 LINE L1 5838 7090 -633 282 229 49 0 chr13 84894278 84894339 -34850559 + L1 LINE L1 6330 6393 -1172 * 924 60 16 49 chr13 84894548 84894656 -34850242 + (TTTC)n Simple_repeat Simple_repeat 1 283 0 924 60 16 49 chr13 84894656 84894841 -34850057 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 207 114 0 0 chr13 84894922 84894957 -34849941 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1476 154 0 45 chr13 84894972 84895219 -34849679 - AluSx SINE Alu -59 253 18 27 29 0 0 chr13 84895765 84895799 -34849099 + AT_rich Low_complexity Low_complexity 1 34 0 27 103 0 0 chr13 84896712 84896809 -34848089 + AT_rich Low_complexity Low_complexity 1 97 0 284 204 32 43 chr13 84898229 84898322 -34846576 + L1MEd LINE L1 1072 1163 -4956 713 159 87 0 chr13 84899067 84899193 -34845705 - AluJb SINE Alu -171 141 5 207 196 0 39 chr13 84899257 84899308 -34845590 - L3 LINE CR1 -1347 230 182 2773 126 18 11 chr13 84899403 84899840 -34845058 - MER83 LTR ERV1 -8 440 1 295 250 68 38 chr13 84900501 84900633 -34844265 - L1ME3A LINE L1 -99 6071 5936 182 215 0 15 chr13 84900640 84900705 -34844193 + (TA)n Simple_repeat Simple_repeat 2 65 0 205 283 14 28 chr13 84900725 84900870 -34844028 + (TA)n Simple_repeat Simple_repeat 1 143 0 230 227 0 82 chr13 84900871 84900968 -34843930 - L1MC4 LINE L1 -1339 6703 6615 * 245 318 0 0 chr13 84900899 84900987 -34843911 + L1MC4 LINE L1 6614 6701 -1341 383 233 10 0 chr13 84900987 84901090 -34843808 + (TA)n Simple_repeat Simple_repeat 1 104 0 3039 163 70 25 chr13 84901636 84902331 -34842567 - LTR8A LTR ERV1 0 727 1 833 214 17 0 chr13 84902331 84902504 -34842394 - L1PB4 LINE L1 -29 6127 5952 2024 107 36 8 chr13 84902506 84902895 -34842003 - LTR7 LTR ERV1 0 450 1 291 184 40 26 chr13 84902895 84902971 -34841927 - L1PB4 LINE L1 -201 5955 5879 * 385 229 0 0 chr13 84902966 84903049 -34841849 - L1PB4 LINE L1 -178 5978 5896 355 192 13 13 chr13 84903059 84903137 -34841761 - L1PB4 LINE L1 -184 5972 5895 306 285 68 41 chr13 84903235 84903456 -34841442 + Charlie7 DNA MER1_type 291 517 -2095 2643 148 40 9 chr13 84903753 84904198 -34840700 - MER50 LTR ERV1 -33 701 243 1226 113 15 36 chr13 84904199 84904394 -34840504 - LTR8 LTR ERV1 -175 516 326 1610 117 8 32 chr13 84904396 84904643 -34840255 - MER50 LTR ERV1 -483 251 11 363 211 53 90 chr13 84904765 84904994 -34839904 - L1MDa LINE L1 -3864 2676 2453 2736 83 95 0 chr13 84904994 84905403 -34839495 - LTR7 LTR ERV1 -2 448 1 363 211 53 90 chr13 84905403 84905414 -34839484 - L1MDa LINE L1 -4087 2453 2443 1916 112 51 45 chr13 84905415 84905771 -34839127 - HERVH LTR ERV1 -34 7679 7322 1383 134 19 0 chr13 84905769 84905985 -34838913 - HERVH LTR ERV1 -1894 5819 5600 * 8098 118 4 4 chr13 84905986 84907708 -34837190 - HERVH LTR ERV1 -1866 5225 3492 * 19747 104 54 32 chr13 84907698 84910919 -34833979 - HERVH LTR ERV1 -4423 3290 1 2883 73 93 0 chr13 84910921 84911331 -34833567 - LTR7 LTR ERV1 -2 448 1 276 240 50 50 chr13 84911669 84911848 -34833050 - L1MDa LINE L1 -4640 2081 1903 3612 134 11 101 chr13 84912567 84913327 -34831571 - LTR8 LTR ERV1 0 691 1 1922 124 0 39 chr13 84914246 84914553 -34830345 - AluY SINE Alu -16 295 1 414 97 0 28 chr13 84914657 84914729 -34830169 - L1PA5 LINE L1 0 6154 6085 1587 243 57 26 chr13 84915268 84915758 -34829140 + MLT1D LTR MaLR 1 505 0 1940 136 7 27 chr13 84915968 84916269 -34828629 - AluSg SINE Alu -15 295 1 22 35 0 0 chr13 84917349 84917378 -34827520 + AT_rich Low_complexity Low_complexity 1 29 0 2193 63 10 27 chr13 84917602 84917902 -34826996 + AluY SINE Alu 1 295 -16 210 71 0 0 chr13 84917926 84917954 -34826944 + (A)n Simple_repeat Simple_repeat 1 28 0 274 264 117 119 chr13 84917987 84918484 -34826414 + MLT1H1 LTR MaLR 15 510 -32 443 253 32 86 chr13 84918735 84918784 -34826114 + L2 LINE L2 2701 2751 -563 2249 70 21 0 chr13 84918784 84919070 -34825828 + AluSc SINE Alu 1 292 -17 443 253 32 86 chr13 84919070 84919206 -34825692 + L2 LINE L2 2751 2876 -438 221 240 248 8 chr13 84919349 84919478 -34825420 - MIR SINE MIR -15 247 88 218 348 14 0 chr13 84919731 84919800 -34825098 - MIR SINE MIR -188 74 5 649 333 88 9 chr13 84919801 84920131 -34824767 + L2 LINE L2 2953 3308 -5 222 180 0 33 chr13 84920225 84920286 -34824612 + T-rich Low_complexity Low_complexity 3 61 0 240 274 127 53 chr13 84920600 84920845 -34824053 - MER46C DNA MER2_type -38 300 38 2184 160 8 0 chr13 84921072 84921435 -34823463 + MER47A DNA MER2_type 1 366 0 21 0 0 0 chr13 84921690 84921711 -34823187 + AT_rich Low_complexity Low_complexity 1 21 0 1919 123 67 0 chr13 84922218 84922503 -34822395 + AluSq SINE Alu 1 304 -9 2062 154 69 0 chr13 84923148 84923525 -34821373 + MER57A LTR ERV1 1 403 0 1227 202 201 26 chr13 84923721 84924107 -34820791 - LTR49 LTR ERV1 -80 515 87 265 257 0 0 chr13 84925727 84925801 -34819097 - MER116 DNA Mariner -1 79 6 473 283 39 33 chr13 84926006 84926186 -34818712 - MIR SINE MIR -35 227 47 22 0 0 0 chr13 84926950 84926972 -34817926 + AT_rich Low_complexity Low_complexity 1 22 0 3921 25 11 0 chr13 84927230 84927864 -34817034 + L1P1 LINE L1 4917 5554 -601 315 338 86 25 chr13 84928080 84928278 -34816620 - HAL1 LINE L1 -861 1646 1437 21 0 0 0 chr13 84928338 84928359 -34816539 + AT_rich Low_complexity Low_complexity 1 21 0 333 68 0 0 chr13 84928424 84928468 -34816430 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 24 53 0 0 chr13 84928919 84928957 -34815941 + AT_rich Low_complexity Low_complexity 1 38 0 22 88 0 0 chr13 84930366 84930423 -34814475 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr13 84930725 84930747 -34814151 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 84931975 84931996 -34812902 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 84932651 84932684 -34812214 + AT_rich Low_complexity Low_complexity 1 33 0 460 286 89 71 chr13 84932786 84933237 -34811661 + L1MEc LINE L1 1278 1736 -4985 1473 96 5 0 chr13 84934882 84935080 -34809818 + HERVH LTR ERV1 4580 4778 -2935 24 0 0 0 chr13 84935111 84935135 -34809763 + AT_rich Low_complexity Low_complexity 1 24 0 1047 120 49 5 chr13 84935468 84935652 -34809246 + L1MA1 LINE L1 6106 6297 -5 401 302 94 39 chr13 84936088 84936396 -34808502 - L1M4 LINE L1 -1088 5058 4734 251 250 7 14 chr13 84936666 84936806 -34808092 + L1MEc LINE L1 1665 1832 -4741 1596 169 8 54 chr13 84936871 84937233 -34807665 + MER4A LTR ERV1 261 664 0 1655 218 104 61 chr13 84937240 84937858 -34807040 + L1MEc LINE L1 1810 2471 -4069 1292 196 36 0 chr13 84937858 84938134 -34806764 + L1PB4 LINE L1 5866 6151 -5 1655 218 104 61 chr13 84938134 84938305 -34806593 + L1MEc LINE L1 2471 2633 -3907 24 0 0 0 chr13 84938645 84938669 -34806229 + AT_rich Low_complexity Low_complexity 1 24 0 38 66 0 28 chr13 84939094 84939200 -34805698 + AT_rich Low_complexity Low_complexity 1 103 0 743 104 0 0 chr13 84939207 84939313 -34805585 - L1PA13 LINE L1 -4 6159 6054 3438 120 50 14 chr13 84939315 84940083 -34804815 - L1PA13 LINE L1 -344 5819 5019 5046 169 8 7 chr13 84940085 84941033 -34803865 + L1P LINE L1 3840 4788 -1358 421 246 0 8 chr13 84941174 84941296 -34803602 + L1P LINE L1 4318 4438 -1708 2015 87 6 72 chr13 84943345 84943666 -34801232 - AluSx SINE Alu -6 306 7 29 47 0 0 chr13 84944252 84944295 -34800603 + AT_rich Low_complexity Low_complexity 1 43 0 273 267 8 99 chr13 84945559 84945690 -34799208 - L2 LINE L2 -10 3303 3185 297 0 0 0 chr13 84945788 84945821 -34799077 + (TG)n Simple_repeat Simple_repeat 1 33 0 273 128 0 0 chr13 84945821 84945868 -34799030 + (GA)n Simple_repeat Simple_repeat 2 48 0 1676 198 20 9 chr13 84947614 84947957 -34796941 + MER4D LTR ERV1 557 903 0 192 288 0 34 chr13 84948288 84948347 -34796551 - MIR SINE MIR -147 115 59 3842 164 17 19 chr13 84948537 84949239 -34795659 - MER50 LTR ERV1 -23 711 11 216 304 107 18 chr13 84949502 84949614 -34795284 - MIR SINE MIR -106 156 35 444 161 0 0 chr13 84951393 84951474 -34793424 + (CA)n Simple_repeat Simple_repeat 2 82 0 310 318 94 53 chr13 84951647 84951892 -34793006 + MLT1J LTR MaLR 109 363 -148 2003 208 38 13 chr13 84951892 84952345 -34792553 - MER101 LTR ERV1 0 474 11 205 145 13 53 chr13 84953060 84953136 -34791762 + GA-rich Low_complexity Low_complexity 4 76 0 185 69 69 28 chr13 84953227 84953299 -34791599 + (TA)n Simple_repeat Simple_repeat 2 76 0 1988 154 0 0 chr13 84953309 84953620 -34791278 - AluSx SINE Alu -1 311 1 2235 241 33 45 chr13 84954009 84954833 -34790065 + L1M4 LINE L1 3797 4610 -1536 2500 243 38 15 chr13 84954944 84955660 -34789238 + L1M4 LINE L1 4602 5333 -813 315 0 0 0 chr13 84955662 84955697 -34789201 + (CA)n Simple_repeat Simple_repeat 2 36 0 2001 112 40 7 chr13 84955864 84956160 -34788738 - AluSx SINE Alu -3 309 4 297 0 0 0 chr13 84957016 84957049 -34787849 + (T)n Simple_repeat Simple_repeat 1 33 0 243 0 0 0 chr13 84958307 84958334 -34786564 + (A)n Simple_repeat Simple_repeat 1 27 0 204 125 0 0 chr13 84958492 84958524 -34786374 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1604 249 46 92 chr13 84958816 84959458 -34785440 + L1MC4 LINE L1 6520 7121 -921 2364 97 3 0 chr13 84959458 84959769 -34785129 - AluSp SINE Alu -1 312 1 1604 249 46 92 chr13 84959769 84959924 -34784974 + L1MC4 LINE L1 7121 7281 -761 284 235 77 12 chr13 84959933 84960071 -34784827 + L1MC4 LINE L1 7901 8042 0 296 304 40 16 chr13 84961718 84961843 -34783055 - MER94 DNA DNA -2 132 5 10522 38 6 2 chr13 84962484 84964535 -34780363 + L1PA5 LINE L1 4081 6136 -18 309 51 0 0 chr13 84965338 84965377 -34779521 + (CA)n Simple_repeat Simple_repeat 2 40 0 248 370 158 25 chr13 84965379 84965582 -34779316 + L2 LINE L2 2904 3133 -180 1494 198 3 51 chr13 84965623 84965937 -34778961 - AluJo SINE Alu -13 299 1 21 100 0 0 chr13 84966042 84966112 -34778786 + AT_rich Low_complexity Low_complexity 1 70 0 523 318 42 9 chr13 84966464 84966678 -34778220 - ERVL LTR ERVL -3240 2524 2304 2062 141 0 0 chr13 84967097 84967402 -34777496 - AluSx SINE Alu -7 305 1 23 0 0 0 chr13 84967495 84967518 -34777380 + AT_rich Low_complexity Low_complexity 1 23 0 269 289 0 21 chr13 84967933 84968030 -34776868 - ERVL LTR ERVL -4049 1715 1621 2492 104 35 3 chr13 84968320 84968695 -34776203 - L1PA10 LINE L1 0 6168 5782 1671 174 7 13 chr13 84969223 84969533 -34775365 - AluJo SINE Alu -4 308 1 1828 210 35 22 chr13 84971786 84972238 -34772660 + MLT1C LTR MaLR 8 465 -2 1319 271 43 13 chr13 84972264 84972640 -34772258 - LTR40a LTR ERVL 0 519 133 210 333 30 0 chr13 84972640 84972706 -34772192 - MIR SINE MIR -194 68 1 263 183 32 11 chr13 84972792 84972885 -34772013 + (TA)n Simple_repeat Simple_repeat 2 96 0 186 43 0 0 chr13 84973009 84973032 -34771866 + (TC)n Simple_repeat Simple_repeat 2 24 0 192 163 0 0 chr13 84973046 84973089 -34771809 + (TG)n Simple_repeat Simple_repeat 1 43 0 216 67 0 0 chr13 84973200 84973230 -34771668 + (A)n Simple_repeat Simple_repeat 1 30 0 486 270 0 17 chr13 84973237 84973352 -34771546 - L1ME LINE L1 -574 5590 5478 317 279 23 62 chr13 84973584 84973713 -34771185 + MER20 DNA MER1_type 4 127 -92 2017 197 46 21 chr13 84974074 84974552 -34770346 - L1MA8 LINE L1 -816 5330 4841 * 4120 182 50 34 chr13 84974550 84975499 -34769399 + L1MA8 LINE L1 5328 6291 0 192 250 0 0 chr13 84975630 84975670 -34769228 - MIR SINE MIR -127 135 96 22 70 0 0 chr13 84976689 84976732 -34768166 + AT_rich Low_complexity Low_complexity 1 43 0 1972 140 14 0 chr13 84976923 84977215 -34767683 - AluSx SINE Alu -16 296 1 21 36 0 0 chr13 84977944 84977972 -34766926 + AT_rich Low_complexity Low_complexity 1 28 0 2182 116 0 0 chr13 84977976 84978270 -34766628 + AluSx SINE Alu 1 294 -18 590 266 15 110 chr13 84978494 84978764 -34766134 + MER92A LTR ERV1 119 564 -72 506 143 76 0 chr13 84978764 84978869 -34766029 - L1MA7 LINE L1 0 6291 6179 590 266 15 110 chr13 84978869 84978936 -34765962 + MER92A LTR ERV1 564 636 0 870 231 107 13 chr13 84979695 84979994 -34764904 - L1MB7 LINE L1 -17 6167 5841 * 2096 258 47 45 chr13 84979993 84980881 -34764017 - L1MB7 LINE L1 -1820 4326 3437 * 5309 222 176 18 chr13 84980879 84982710 -34762188 - L1MA4A LINE L1 -1 7004 5464 7119 198 28 20 chr13 84982710 84983960 -34760938 - L1PA16 LINE L1 -1 6165 4925 2284 169 2 15 chr13 84983960 84984368 -34760530 + MER57A LTR ERV1 1 403 0 7119 198 28 20 chr13 84984368 84984482 -34760416 - L1PA16 LINE L1 -1241 4925 4813 190 0 67 0 chr13 84984482 84984512 -34760386 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 7119 198 28 20 chr13 84984512 84985614 -34759284 - L1PA16 LINE L1 -1353 4813 3686 5309 222 176 18 chr13 84985614 84986507 -34758391 - L1MA4A LINE L1 -1541 5464 3819 3114 215 10 40 chr13 84986509 84988032 -34756866 - L1MA4 LINE L1 -3 6171 4680 2052 210 87 4 chr13 84988027 84988531 -34756367 - L1MA4A LINE L1 -3004 3844 3299 * 1331 162 4 17 chr13 84988550 84988784 -34756114 - L1MA4A LINE L1 -6606 243 13 1142 216 41 118 chr13 84988782 84989471 -34755427 - L1M4 LINE L1 -2696 3450 2815 * 4417 190 18 30 chr13 84989496 84990728 -34754170 + L1PB4 LINE L1 4934 6149 -7 214 224 0 40 chr13 84991583 84991659 -34753239 + A-rich Low_complexity Low_complexity 2 74 0 197 328 85 32 chr13 84991963 84992152 -34752746 + L2 LINE L2 1217 1415 -1899 1877 174 131 42 chr13 84992272 84992854 -34752044 + MER52C LTR ERV1 1 870 -408 4362 143 24 25 chr13 84992860 84993826 -34751072 + pTR5 LTR ERV1 743 2021 -417 349 214 31 20 chr13 84993829 84993927 -34750971 + LTR30 LTR ERV1 544 642 -80 1555 89 0 0 chr13 84993930 84994144 -34750754 + pTR5 LTR ERV1 172 385 -2053 2022 145 96 29 chr13 84994145 84994531 -34750367 + MER52C LTR ERV1 867 1278 0 334 351 95 55 chr13 84994753 84995460 -34749438 + L2 LINE L2 1780 2514 -800 21 71 0 0 chr13 84997216 84997258 -34747640 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr13 84997534 84997565 -34747333 + AT_rich Low_complexity Low_complexity 1 31 0 1554 202 7 0 chr13 84997714 84997996 -34746902 - AluJo SINE Alu -26 286 3 732 131 0 0 chr13 84999700 84999807 -34745091 + L1PB4 LINE L1 6008 6114 -42 761 160 41 114 chr13 84999928 85000147 -34744751 + L1PA16 LINE L1 5964 6166 0 1691 259 74 13 chr13 85000849 85001289 -34743609 + MLT2B1 LTR ERVL 8 479 -41 207 0 0 0 chr13 85001289 85001312 -34743586 + (CA)n Simple_repeat Simple_repeat 2 24 0 1691 259 74 13 chr13 85001312 85001330 -34743568 + MLT2B1 LTR ERVL 479 494 -26 22 35 0 0 chr13 85001367 85001396 -34743502 + AT_rich Low_complexity Low_complexity 1 29 0 445 286 163 7 chr13 85002796 85002943 -34741955 + MER5A DNA MER1_type 14 183 -6 199 373 18 71 chr13 85004590 85004815 -34740083 + MIR SINE MIR 4 216 -46 2741 170 64 47 chr13 85005326 85006087 -34738811 + L1MB1 LINE L1 5197 5970 -198 * 6543 205 10 14 chr13 85006073 85007773 -34737125 - L1PA16 LINE L1 -597 5569 3882 3210 124 65 18 chr13 85007773 85008337 -34736561 + L1PA16 LINE L1 5575 6166 0 1122 179 9 0 chr13 85008344 85008556 -34736342 + L1MB1 LINE L1 5952 6165 -3 503 66 13 0 chr13 85010275 85010351 -34734547 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 257 276 35 23 chr13 85010508 85010595 -34734303 - L2 LINE L2 0 3313 3226 297 0 0 0 chr13 85010702 85010735 -34734163 + (TC)n Simple_repeat Simple_repeat 2 34 0 233 224 0 0 chr13 85010765 85010823 -34734075 + (TA)n Simple_repeat Simple_repeat 2 59 0 318 200 30 50 chr13 85010920 85011020 -34733878 - L1MEc LINE L1 -4299 2097 2000 193 179 143 18 chr13 85011114 85011170 -34733728 + MIR SINE MIR 127 189 -73 362 320 108 54 chr13 85012551 85012904 -34731994 + L2 LINE L2 2931 3302 -11 273 245 0 0 chr13 85013152 85013205 -34731693 + Tigger5 DNA MER2_type 1 53 -2270 466 217 0 0 chr13 85013212 85013304 -34731594 + Tigger5 DNA MER2_type 2231 2322 -1 31 44 0 0 chr13 85014701 85014746 -34730152 + AT_rich Low_complexity Low_complexity 1 45 0 1324 248 27 65 chr13 85015059 85015462 -34729436 - MLT1E2 LTR MaLR -24 602 215 481 206 23 15 chr13 85015496 85015627 -34729271 - L1MB8 LINE L1 -5 6173 6042 1956 138 0 3 chr13 85015767 85016057 -34728841 - AluSq SINE Alu -24 289 1 231 313 92 72 chr13 85016581 85016776 -34728122 - MLT1H LTR MaLR -263 286 88 23 54 0 0 chr13 85017055 85017092 -34727806 + AT_rich Low_complexity Low_complexity 1 37 0 3585 55 13 0 chr13 85017617 85018074 -34726824 - L1PA4 LINE L1 -2 6153 5691 2514 21 0 0 chr13 85018074 85018364 -34726534 + L1P2 LINE L1 5364 5653 -502 417 286 69 41 chr13 85018789 85019041 -34725857 - L1M4 LINE L1 -3014 3132 2864 2756 19 0 0 chr13 85019041 85019352 -34725546 + AluY SINE Alu 1 311 0 417 286 69 41 chr13 85019352 85019490 -34725408 - L1M4 LINE L1 -3282 2864 2731 1494 238 44 21 chr13 85019490 85019877 -34725021 - MSTD LTR MaLR 0 396 1 1058 230 112 14 chr13 85019970 85020325 -34724573 - MLT2B2 LTR ERVL 0 397 1 6381 186 18 16 chr13 85020327 85021555 -34723343 - ERVL-B2 LTR ERVL -9 5755 4525 487 134 0 49 chr13 85021552 85021634 -34723264 - ERVL LTR ERVL -4495 1269 1192 * 2232 118 44 11 chr13 85021822 85022185 -34722713 - THE1C LTR MaLR 0 375 1 1270 265 75 20 chr13 85022536 85023027 -34721871 - L1MB8 LINE L1 0 6178 5661 4545 189 45 5 chr13 85023043 85023969 -34720929 - L1PA16 LINE L1 -8 6158 5154 207 0 0 0 chr13 85023969 85023992 -34720906 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4545 189 45 5 chr13 85023992 85024523 -34720375 - L1PA16 LINE L1 -1012 5154 4645 6434 240 36 4 chr13 85024526 85026307 -34718591 + L1PA16 LINE L1 2794 4632 -1514 22 0 0 0 chr13 85026444 85026466 -34718432 + AT_rich Low_complexity Low_complexity 1 22 0 336 24 0 0 chr13 85026782 85026823 -34718075 + (TG)n Simple_repeat Simple_repeat 1 41 0 29 28 0 0 chr13 85027583 85027619 -34717279 + AT_rich Low_complexity Low_complexity 1 36 0 587 246 8 0 chr13 85028055 85028189 -34716709 + AluJo SINE Alu 1 135 -177 415 344 63 48 chr13 85028234 85028612 -34716286 + L2 LINE L2 2920 3303 -10 216 0 0 0 chr13 85028962 85028986 -34715912 + (CA)n Simple_repeat Simple_repeat 1 24 0 212 363 81 0 chr13 85028988 85029112 -34715786 + L2 LINE L2 3178 3311 -2 380 331 7 0 chr13 85029758 85029906 -34714992 + L1ME LINE L1 5511 5659 -503 220 102 41 0 chr13 85030020 85030069 -34714829 + (TA)n Simple_repeat Simple_repeat 1 51 0 25 51 0 0 chr13 85030691 85030730 -34714168 + AT_rich Low_complexity Low_complexity 1 39 0 425 307 113 27 chr13 85030987 85031287 -34713611 + L1ME4a LINE L1 5520 5845 -276 1609 210 53 63 chr13 85031710 85032220 -34712678 - MLT1D LTR MaLR 0 505 1 29 47 0 0 chr13 85032599 85032642 -34712256 + AT_rich Low_complexity Low_complexity 1 43 0 33 66 0 0 chr13 85033215 85033276 -34711622 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr13 85033489 85033512 -34711386 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 85033697 85033727 -34711171 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr13 85033783 85033814 -34711084 + AT_rich Low_complexity Low_complexity 1 31 0 3284 122 14 0 chr13 85033962 85034478 -34710420 + L1MA2 LINE L1 5780 6302 -2 21 36 0 0 chr13 85034513 85034541 -34710357 + AT_rich Low_complexity Low_complexity 1 28 0 246 329 0 0 chr13 85034768 85034850 -34710048 - L2 LINE L2 -1 3271 3190 250 265 90 68 chr13 85035305 85035480 -34709418 - L2 LINE L2 -812 2502 2319 2401 42 0 35 chr13 85035480 85035791 -34709107 + AluY SINE Alu 1 300 -11 250 265 90 68 chr13 85035791 85035849 -34709049 - L2 LINE L2 -995 2319 2264 271 309 0 21 chr13 85036081 85036178 -34708720 - MLT1I LTR MaLR -207 202 108 225 241 82 19 chr13 85037457 85037615 -34707283 - MER69 DNA AcHobo -1 2525 2358 4307 164 24 1 chr13 85037634 85038376 -34706522 - L1PA15 LINE L1 -21 6144 5386 465 274 30 55 chr13 85038709 85038873 -34706025 - MER69 DNA AcHobo -2194 332 173 2463 65 0 0 chr13 85038884 85039192 -34705706 - AluY SINE Alu -3 308 1 344 256 0 12 chr13 85039259 85039341 -34705557 - MER69 DNA AcHobo -1070 156 76 2062 118 3 0 chr13 85039743 85040040 -34704858 + AluSx SINE Alu 1 298 -14 570 35 11 23 chr13 85040104 85040191 -34704707 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 958 195 56 35 chr13 85040379 85040610 -34704288 - MLT1D LTR MaLR 0 505 270 708 230 18 12 chr13 85040660 85040825 -34704073 - MLT1D LTR MaLR -334 171 6 21 0 0 0 chr13 85040990 85041011 -34703887 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 85041135 85041159 -34703739 + AT_rich Low_complexity Low_complexity 1 24 0 29077 38 93 1 chr13 85043132 85047736 -34697162 - L1PA4 LINE L1 0 6155 1128 22 0 0 0 chr13 85048133 85048155 -34696743 + AT_rich Low_complexity Low_complexity 1 22 0 1239 142 10 0 chr13 85049439 85049636 -34695262 - AluSp SINE Alu -12 301 103 7519 150 10 65 chr13 85049978 85051435 -34693463 + Tigger1 DNA MER2_type 3 1379 -1039 4140 171 59 0 chr13 85051435 85052234 -34692664 + Tigger1 DNA MER2_type 1573 2418 0 1108 256 50 28 chr13 85054053 85054413 -34690485 - MLT1C LTR MaLR -18 449 82 598 140 15 81 chr13 85054403 85054539 -34690359 - MLT1C LTR MaLR -330 137 11 * 829 113 35 7 chr13 85055312 85055454 -34689444 + L1MA9 LINE L1 6019 6164 -148 2227 103 3 0 chr13 85055468 85055768 -34689130 + AluSq SINE Alu 1 301 -12 1352 234 50 5 chr13 85055829 85056227 -34688671 + L1 LINE L1 2737 3152 -2994 3105 242 69 33 chr13 85056301 85056392 -34688506 + L1MD2 LINE L1 5209 5295 -1064 2077 103 0 7 chr13 85056392 85056700 -34688198 + AluSg SINE Alu 3 308 0 3105 242 69 33 chr13 85056700 85057684 -34687214 + L1MD2 LINE L1 5295 6338 -21 868 192 26 47 chr13 85058092 85058285 -34686613 + MER20 DNA MER1_type 31 219 0 22 35 0 0 chr13 85058688 85058717 -34686181 + AT_rich Low_complexity Low_complexity 1 29 0 185 178 22 0 chr13 85059065 85059110 -34685788 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 352 291 26 0 chr13 85059380 85059497 -34685401 - MER117 DNA MER1_type -67 130 11 2087 159 51 56 chr13 85060108 85060584 -34684314 - L1M2 LINE L1 -596 5695 5212 189 0 0 0 chr13 85060584 85060605 -34684293 + (GA)n Simple_repeat Simple_repeat 2 22 0 2087 159 51 56 chr13 85060605 85060691 -34684207 - L1M2 LINE L1 -1079 5212 5127 2170 85 0 3 chr13 85061545 85061853 -34683045 - AluY SINE Alu 0 307 1 272 227 144 9 chr13 85061925 85062084 -34682814 - L1MA7 LINE L1 -49 6242 6053 29 70 0 0 chr13 85062382 85062439 -34682459 + AT_rich Low_complexity Low_complexity 1 57 0 2505 165 45 0 chr13 85062647 85063096 -34681802 + Tigger3b DNA MER2_type 1 469 -762 1310 149 55 24 chr13 85063195 85063523 -34681375 + Tigger3b DNA MER2_type 475 812 -420 5166 163 42 15 chr13 85063523 85064862 -34680036 - L1PA15 LINE L1 -4 6161 4804 2103 103 17 3 chr13 85064926 85065228 -34679670 - AluSg SINE Alu -2 308 3 405 212 109 80 chr13 85065351 85065488 -34679410 + MLT2F LTR ERVL 6 146 -517 737 231 50 28 chr13 85066030 85066212 -34678686 - MER31A LTR ERV1 -7 478 293 1595 269 63 29 chr13 85066241 85067045 -34677853 + L1ME1 LINE L1 3890 4721 -1425 1368 231 62 64 chr13 85067047 85067515 -34677383 + MLT1C LTR MaLR 1 467 0 2095 259 81 65 chr13 85067524 85068929 -34675969 + L1ME1 LINE L1 4728 6149 -17 22 70 0 0 chr13 85068975 85069018 -34675880 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 85069289 85069312 -34675586 + AT_rich Low_complexity Low_complexity 1 23 0 367 277 54 76 chr13 85070059 85070283 -34674615 - L2 LINE L2 -1 3312 3094 1738 186 116 13 chr13 85070319 85070677 -34674221 + MSTA LTR MaLR 9 410 -18 2473 77 0 0 chr13 85070677 85070987 -34673911 - AluY SINE Alu 0 311 2 1738 186 116 13 chr13 85070987 85071009 -34673889 + MSTA LTR MaLR 410 428 0 1939 148 36 18 chr13 85072793 85073130 -34671768 - LTR3b LTR ERVK 0 500 158 450 232 40 51 chr13 85073742 85073919 -34670979 + MER96B DNA MER1_type? 1 175 -242 876 185 67 39 chr13 85074002 85074187 -34670711 + MSTD LTR MaLR 1 206 -159 360 0 0 0 chr13 85074187 85074227 -34670671 + (CA)n Simple_repeat Simple_repeat 2 41 0 876 185 67 39 chr13 85074227 85074375 -34670523 + MSTD LTR MaLR 206 348 -17 323 262 163 0 chr13 85074826 85074967 -34669931 + HAL1 LINE L1 1982 2145 -362 321 344 56 44 chr13 85075007 85075257 -34669641 - L1ME3A LINE L1 -30 6140 5888 371 309 14 43 chr13 85075302 85075509 -34669389 - L1ME3A LINE L1 -391 5779 5579 2347 76 0 13 chr13 85075740 85076055 -34668843 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 85076110 85076138 -34668760 + AT_rich Low_complexity Low_complexity 1 28 0 236 365 71 0 chr13 85076138 85076264 -34668634 + MIR SINE MIR 91 225 -37 202 194 0 0 chr13 85076454 85076490 -34668408 + (TG)n Simple_repeat Simple_repeat 2 37 0 216 200 0 0 chr13 85076857 85076902 -34667996 + A-rich Low_complexity Low_complexity 1 45 0 240 111 0 0 chr13 85077177 85077213 -34667685 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2013 168 38 5 chr13 85077538 85077938 -34666960 + L1PB3 LINE L1 5736 6148 -6 47 67 0 0 chr13 85077991 85078080 -34666818 + AT_rich Low_complexity Low_complexity 1 89 0 21 36 0 0 chr13 85079292 85079320 -34665578 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 85080921 85080947 -34663951 + AT_rich Low_complexity Low_complexity 1 26 0 1884 137 33 22 chr13 85082190 85082556 -34662342 - L1MA8 LINE L1 -3 6288 5919 953 201 119 0 chr13 85082739 85082933 -34661965 - Tigger7 DNA MER2_type -2270 217 1 364 262 21 50 chr13 85082933 85083049 -34661849 - Cheshire DNA MER1_type -2144 276 165 581 200 9 0 chr13 85083299 85083404 -34661494 + FLAM_C SINE Alu 15 120 -23 180 0 0 0 chr13 85083867 85083887 -34661011 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 562 315 107 27 chr13 85084184 85084482 -34660416 + MLT1J2 LTR MaLR 6 327 -123 3216 164 59 3 chr13 85085548 85086126 -34658772 - MER50 LTR ERV1 -124 610 1 186 43 0 0 chr13 85086224 85086247 -34658651 + (TG)n Simple_repeat Simple_repeat 1 23 0 1146 356 102 38 chr13 85086254 85087296 -34657602 - L2 LINE L2 -2160 1154 47 2632 224 12 3 chr13 85087665 85088258 -34656640 + L1MC3 LINE L1 6400 6997 -788 5850 228 30 11 chr13 85088260 85089548 -34655350 + L1PA15 LINE L1 3 1239 -5610 490 221 0 0 chr13 85089554 85089649 -34655249 + L1PA15 LINE L1 5577 5671 -1178 297 0 0 0 chr13 85089654 85089687 -34655211 + (CA)n Simple_repeat Simple_repeat 1 33 0 1290 133 0 0 chr13 85089917 85090120 -34654778 - L1PA14 LINE L1 -2 6159 5957 1251 198 47 17 chr13 85090187 85090485 -34654413 + MER44D DNA MER2_type 1 577 -32 199 203 27 0 chr13 85090501 85090575 -34654323 + (TA)n Simple_repeat Simple_repeat 2 77 0 1470 159 0 0 chr13 85091409 85091635 -34653263 + AluSx SINE Alu 63 288 -24 1777 182 3 0 chr13 85091942 85092233 -34652665 + AluJo SINE Alu 1 292 -20 232 242 32 32 chr13 85092603 85092665 -34652233 - L2 LINE L2 -1030 2284 2223 298 318 208 0 chr13 85092666 85092858 -34652040 + L2 LINE L2 2461 2692 -622 237 151 0 0 chr13 85092863 85092916 -34651982 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 219 167 0 0 chr13 85092909 85092951 -34651947 + (CATA)n Simple_repeat Simple_repeat 2 43 0 * 1718 257 20 7 chr13 85093905 85094349 -34650549 - LTR65 LTR ERV1 -219 450 1 1387 172 0 0 chr13 85094947 85095174 -34649724 + MER46A DNA MER2_type 1 227 -9 2969 189 6 6 chr13 85095201 85095725 -34649173 + Tigger7 DNA MER2_type 2 525 -208 237 184 0 0 chr13 85095719 85095757 -34649141 + Tigger7 DNA MER2_type 2396 2433 -54 * 995 207 0 5 chr13 85096670 85096883 -34648015 - L1PA15 LINE L1 -1080 5769 5558 * 5763 135 15 4 chr13 85096875 85097968 -34646930 + L1PA15 LINE L1 5742 6847 -21 26 0 0 0 chr13 85097998 85098024 -34646874 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr13 85098046 85098074 -34646824 + AT_rich Low_complexity Low_complexity 1 28 0 3877 270 66 64 chr13 85098219 85100321 -34644577 - L1MC4a LINE L1 -103 7705 5598 2291 98 0 0 chr13 85100321 85100618 -34644280 + AluSg SINE Alu 1 297 -13 3877 270 66 64 chr13 85100618 85100798 -34644100 - L1MC4a LINE L1 -2210 5598 5420 2803 92 18 8 chr13 85100989 85101381 -34643517 + MLT2A1 LTR ERVL 1 396 -48 235 299 83 50 chr13 85101487 85101939 -34642959 - L1MC4a LINE L1 -1715 4431 3957 2296 61 14 0 chr13 85101939 85102233 -34642665 - L1PA4 LINE L1 -3 6152 5855 235 299 83 50 chr13 85102233 85102319 -34642579 - L1MC4a LINE L1 -2189 3957 3875 2574 216 32 41 chr13 85102323 85102555 -34642343 - L1MB4 LINE L1 -1 6179 5947 2196 107 3 0 chr13 85102555 85102854 -34642044 - AluSp SINE Alu -13 300 1 2574 216 32 41 chr13 85102854 85103016 -34641882 - L1MB4 LINE L1 -233 5947 5785 396 0 0 0 chr13 85103016 85103060 -34641838 + (TA)n Simple_repeat Simple_repeat 1 44 0 2574 216 32 41 chr13 85103060 85103373 -34641525 - L1MB4 LINE L1 -395 5785 5477 426 96 24 24 chr13 85103377 85103460 -34641438 + (TTTC)n Simple_repeat Simple_repeat 4 86 0 283 194 32 0 chr13 85103460 85103522 -34641376 - L1MB4 LINE L1 -685 5489 5426 5063 140 32 18 chr13 85103628 85104926 -34639972 - L1PA15 LINE L1 0 6165 4842 635 255 0 6 chr13 85104930 85105087 -34639811 + L1P LINE L1 2225 2380 -3766 1812 99 94 61 chr13 85105240 85105603 -34639295 - THE1C LTR MaLR 0 375 1 241 143 0 0 chr13 85105649 85105684 -34639214 - L1P5 LINE L1 -438 5713 5679 317 343 154 38 chr13 85105969 85106392 -34638506 - LTR33 LTR ERVL -34 487 16 22 56 0 0 chr13 85106422 85106458 -34638440 + AT_rich Low_complexity Low_complexity 1 36 0 219 36 0 0 chr13 85106967 85106995 -34637903 + (TTTTTA)n Simple_repeat Simple_repeat 1 28 0 42679 33 21 1 chr13 85106995 85113026 -34631872 - L1PA2 LINE L1 -1 6154 1 2126 105 10 0 chr13 85114193 85114487 -34630411 - AluSx SINE Alu -11 301 5 708 298 94 57 chr13 85114566 85114972 -34629926 + MLT1H LTR MaLR 126 546 -3 4904 142 27 22 chr13 85115180 85116075 -34628823 + L1PA15-16 LINE L1 1970 2868 -3981 1062 133 9 60 chr13 85116080 85116298 -34628600 + L1PA15-16 LINE L1 2311 2517 -4332 * 1346 256 46 20 chr13 85116283 85116787 -34628111 + L1 LINE L1 2877 3393 -3456 1070 119 0 13 chr13 85116790 85116941 -34627957 + AluSq/x SINE Alu 3 151 -162 20945 97 22 10 chr13 85116941 85118887 -34626011 + MER61A-int LTR ERV1 2206 4199 -1018 2812 7 0 0 chr13 85118887 85119196 -34625702 + AluYa5 SINE Alu 1 309 -2 20945 97 22 10 chr13 85119196 85120227 -34624671 + MER61A-int LTR ERV1 4199 5217 0 1735 152 61 21 chr13 85120227 85120557 -34624341 + MER61A LTR ERV1 1 343 0 245 323 36 62 chr13 85121280 85121472 -34623426 + MIR SINE MIR 65 251 -11 25 65 0 0 chr13 85122085 85122131 -34622767 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr13 85122182 85122210 -34622688 + AT_rich Low_complexity Low_complexity 1 28 0 277 307 39 16 chr13 85122352 85122479 -34622419 - MIR SINE MIR -110 152 23 376 312 82 36 chr13 85123014 85123293 -34621605 + L2 LINE L2 3017 3308 -5 32 26 0 0 chr13 85124040 85124079 -34620819 + AT_rich Low_complexity Low_complexity 1 39 0 311 277 115 14 chr13 85126249 85126397 -34618501 - MIR SINE MIR -10 252 90 1582 67 5 0 chr13 85126966 85127175 -34617723 + L1PA5 LINE L1 5932 6141 -13 798 325 84 12 chr13 85127244 85127672 -34617226 - L1ME3A LINE L1 -7 6163 5705 1313 188 0 0 chr13 85127683 85127907 -34616991 + Tigger4(Zombi) DNA MER2_type 1 224 -2507 685 138 0 57 chr13 85127906 85128029 -34616869 + Tigger4(Zombi) DNA MER2_type 2421 2536 -195 * 1159 213 68 0 chr13 85128030 85128293 -34616605 - AluJo SINE Alu -6 306 26 1014 175 40 0 chr13 85128303 85128503 -34616395 + Tigger4(Zombi) DNA MER2_type 2523 2730 -1 390 130 95 41 chr13 85128623 85128792 -34616106 + (TA)n Simple_repeat Simple_repeat 2 179 0 276 220 46 46 chr13 85128744 85128917 -34615981 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 * 182 105 53 18 chr13 85128919 85128976 -34615922 + (TA)n Simple_repeat Simple_repeat 2 60 0 3824 208 56 39 chr13 85129209 85130979 -34613919 - L1MB1 LINE L1 -46 6122 4323 4923 185 25 20 chr13 85131021 85131814 -34613084 + L1PA16 LINE L1 4748 5535 -631 2361 64 0 0 chr13 85131814 85132096 -34612802 + AluY SINE Alu 13 294 -17 4923 185 25 20 chr13 85132096 85132500 -34612398 + L1PA16 LINE L1 5535 5945 -221 1953 178 85 15 chr13 85132500 85132900 -34611998 + MSTA LTR MaLR 1 428 0 4923 185 25 20 chr13 85132900 85133115 -34611783 + L1PA16 LINE L1 5945 6157 -9 1670 232 81 7 chr13 85133129 85133685 -34611213 - L1 LINE L1 -1458 4688 4092 3379 198 14 33 chr13 85133685 85134475 -34610423 + L1 LINE L1 3333 4107 -2039 1555 244 54 73 chr13 85134470 85135109 -34609789 - L1M4 LINE L1 -1149 4997 4375 * 1690 191 0 3 chr13 85135109 85135402 -34609496 - AluJo SINE Alu -18 294 3 1555 244 54 73 chr13 85135402 85135572 -34609326 - L1M4 LINE L1 -1771 4375 4203 30 27 0 0 chr13 85135578 85135615 -34609283 + AT_rich Low_complexity Low_complexity 1 37 0 1846 195 14 92 chr13 85135622 85136124 -34608774 - L1MC1 LINE L1 -18 6733 6271 498 229 0 0 chr13 85136380 85136489 -34608409 - L1MB1 LINE L1 -1795 4351 4243 379 322 102 30 chr13 85136495 85136799 -34608099 + L2 LINE L2 2152 2477 -837 6252 241 37 12 chr13 85136827 85139276 -34605622 - L1MC1 LINE L1 -511 6251 3744 3901 208 86 58 chr13 85139264 85140637 -34604261 - L1MC1 LINE L1 -4955 1609 1 * 25 75 0 0 chr13 85141463 85141516 -34603382 + AT_rich Low_complexity Low_complexity 1 53 0 3476 236 40 57 chr13 85142288 85143527 -34601371 - L1MC3 LINE L1 -560 7225 6009 249 302 78 0 chr13 85143945 85144061 -34600837 - L1MEc LINE L1 -5261 1135 1011 988 307 95 11 chr13 85144139 85144664 -34600234 - L1MEc LINE L1 -5494 902 334 1654 178 31 34 chr13 85144673 85145022 -34599876 - MLT1A1 LTR MaLR -13 352 5 429 268 27 16 chr13 85145037 85145223 -34599675 - L1MEc LINE L1 -6072 324 32 2159 123 3 0 chr13 85145354 85145654 -34599244 + AluSq SINE Alu 1 301 -12 391 266 14 43 chr13 85145776 85145915 -34598983 + MIR SINE MIR 88 222 -40 1260 165 32 8 chr13 85149395 85149643 -34595255 + L1MA3 LINE L1 6042 6295 -10 694 291 131 34 chr13 85151794 85152268 -34592630 + L1MC4a LINE L1 5369 5888 -1920 352 326 51 82 chr13 85152816 85153205 -34591693 + L1MC4a LINE L1 6230 6606 -1202 1432 234 71 92 chr13 85153481 85154372 -34590526 + L1MC5 LINE L1 6888 7796 -165 1992 130 7 3 chr13 85154372 85154665 -34590233 + AluSx SINE Alu 1 294 -18 243 0 0 0 chr13 85154669 85154696 -34590202 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1432 234 71 92 chr13 85154696 85154914 -34589984 + L1MC5 LINE L1 7799 7927 -34 497 325 68 28 chr13 85155659 85155883 -34589015 + MIR SINE MIR 20 252 -10 26 0 0 0 chr13 85156974 85157000 -34587898 + AT_rich Low_complexity Low_complexity 1 26 0 1396 164 4 0 chr13 85157523 85157826 -34587072 - AluJb SINE Alu 0 390 87 894 192 35 25 chr13 85158302 85158500 -34586398 + MER3 DNA MER1_type 1 200 -9 26 30 0 0 chr13 85159637 85159670 -34585228 + AT_rich Low_complexity Low_complexity 1 33 0 33 25 0 0 chr13 85159758 85159798 -34585100 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 85160996 85161018 -34583880 + AT_rich Low_complexity Low_complexity 1 22 0 2485 126 3 3 chr13 85161080 85161444 -34583454 - THE1B LTR MaLR 0 364 1 403 330 149 9 chr13 85161986 85162201 -34582697 - MIR SINE MIR -12 250 6 1492 243 75 16 chr13 85162528 85163018 -34581880 + LTR40a LTR ERVL 1 519 0 22 56 0 0 chr13 85163068 85163104 -34581794 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr13 85163620 85163642 -34581256 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 25 75 0 0 chr13 85164417 85164470 -34580428 + AT_rich Low_complexity Low_complexity 1 53 0 313 353 62 40 chr13 85165037 85165312 -34579586 + L2 LINE L2 2419 2699 -615 247 281 16 0 chr13 85165998 85166062 -34578836 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 1759 184 61 3 chr13 85166212 85166539 -34578359 + MSTB LTR MaLR 4 349 -77 283 204 0 0 chr13 85167224 85167278 -34577620 - MER5A DNA MER1_type -124 65 12 451 294 0 0 chr13 85167425 85167534 -34577364 + MST-int LTR MaLR 801 909 -742 321 87 0 0 chr13 85167923 85167969 -34576929 - MADE1 DNA Mariner 0 80 35 755 204 0 0 chr13 85168020 85168157 -34576741 - FLAM_C SINE Alu 0 143 7 267 269 81 37 chr13 85168405 85168620 -34576278 + L1M4c LINE L1 1537 1910 -4653 234 281 21 31 chr13 85169491 85169587 -34575311 + MLT1K LTR MaLR 458 552 -36 1384 194 29 87 chr13 85170262 85170663 -34574235 - MER67C LTR ERV1 -234 280 6 297 259 88 34 chr13 85170783 85170930 -34573968 + MLT1I LTR MaLR 255 409 0 788 177 176 76 chr13 85171583 85172122 -34572776 + MER4C LTR ERV1 1 614 -85 207 0 0 0 chr13 85172128 85172151 -34572747 + (T)n Simple_repeat Simple_repeat 1 23 0 3235 67 2 0 chr13 85172477 85172897 -34572001 - L1PA6 LINE L1 -1 6153 5733 3092 62 15 0 chr13 85172897 85173301 -34571597 + L1PA6 LINE L1 5314 5723 -431 269 191 20 16 chr13 85173308 85173388 -34571510 + MER4D LTR ERV1 382 872 0 5968 62 29 3 chr13 85173538 85174297 -34570601 + LTR17 LTR ERV1 2 780 0 295 121 35 17 chr13 85174310 85174368 -34570530 + HSMAR1 DNA Mariner 1229 1287 0 2545 217 48 4 chr13 85174511 85175008 -34569890 + Tigger7 DNA MER2_type 1 519 -214 345 319 11 0 chr13 85175009 85175100 -34569798 + Tigger7 DNA MER2_type 2396 2487 0 946 216 105 38 chr13 85176051 85176422 -34568476 + LTR36 LTR ERV1 1 444 -167 697 153 42 8 chr13 85176422 85176540 -34568358 - FLAM_C SINE Alu -11 122 1 946 216 105 38 chr13 85176540 85176721 -34568177 + LTR36 LTR ERV1 444 611 0 28 79 0 0 chr13 85177060 85177123 -34567775 + AT_rich Low_complexity Low_complexity 1 63 0 230 225 0 14 chr13 85177531 85177602 -34567296 + CT-rich Low_complexity Low_complexity 3 72 0 26 30 0 0 chr13 85178171 85178204 -34566694 + AT_rich Low_complexity Low_complexity 1 33 0 1896 125 61 7 chr13 85179141 85179437 -34565461 - AluSx SINE Alu 0 312 1 3331 148 36 0 chr13 85180130 85180690 -34564208 - LTR19B LTR ERV1 0 580 1 2072 128 73 14 chr13 85181584 85181928 -34562970 - THE1B LTR MaLR 0 364 1 32 0 0 0 chr13 85182688 85182720 -34562178 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 85182924 85182952 -34561946 + AT_rich Low_complexity Low_complexity 1 28 0 326 261 0 87 chr13 85183319 85183411 -34561487 + MER58 DNA MER1_type 1 84 -131 21 0 0 0 chr13 85183415 85183436 -34561462 + AT_rich Low_complexity Low_complexity 1 21 0 1662 192 47 22 chr13 85183439 85183799 -34561099 + L1MC3 LINE L1 7112 7480 -305 1292 149 10 0 chr13 85184412 85184613 -34560285 - L1P3 LINE L1 -5497 378 176 370 169 91 0 chr13 85184833 85184910 -34559988 + MLT1A1 LTR MaLR 270 353 -12 479 210 15 63 chr13 85185045 85185233 -34559665 - MSTC LTR MaLR -169 196 24 23 46 5 0 chr13 85185966 85186041 -34558857 + AT_rich Low_complexity Low_complexity 1 44 0 239 233 37 0 chr13 85186064 85186128 -34558770 - MIR SINE MIR -76 132 67 27 0 0 0 chr13 85187742 85187769 -34557129 + AT_rich Low_complexity Low_complexity 1 27 0 823 236 71 136 chr13 85188886 85189254 -34555644 + MLT1A1 LTR MaLR 22 365 0 379 318 45 39 chr13 85189818 85189997 -34554901 + MLT1F LTR MaLR 310 464 -78 1496 278 59 28 chr13 85190018 85191449 -34553449 + L1M3e LINE L1 7 2516 -4521 996 250 4 12 chr13 85191443 85191699 -34553199 + L1M3e LINE L1 3367 3620 -3486 * 23 33 0 0 chr13 85191715 85191745 -34553153 + AT_rich Low_complexity Low_complexity 1 30 0 1400 215 10 10 chr13 85192417 85192724 -34552174 + AluJo SINE Alu 1 307 -5 535 123 0 19 chr13 85192727 85192833 -34552065 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 4861 259 61 12 chr13 85192833 85194223 -34550675 + L1M1 LINE L1 3313 4831 -2734 207 0 0 0 chr13 85194223 85194246 -34550652 + (CA)n Simple_repeat Simple_repeat 2 24 0 4861 259 61 12 chr13 85194246 85194734 -34550164 + L1M1 LINE L1 4831 5294 -2271 923 291 32 18 chr13 85194730 85195213 -34549685 - L1MC3 LINE L1 -786 6999 3212 * 12513 241 25 27 chr13 85195213 85199206 -34545692 - L1PA16 LINE L1 0 6223 2224 201 39 0 0 chr13 85199206 85199232 -34545666 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 12513 241 25 27 chr13 85199232 85200507 -34544391 - L1PA16 LINE L1 -3999 2224 896 2069 143 0 0 chr13 85200507 85200815 -34544083 - AluSx SINE Alu -4 308 1 12513 241 25 27 chr13 85200815 85201306 -34543592 - L1PA16 LINE L1 -5327 896 406 247 291 10 29 chr13 85201584 85201687 -34543211 - L1PA16 LINE L1 -5954 250 150 244 237 11 65 chr13 85202371 85202464 -34542434 + L2 LINE L2 2809 2896 -376 1227 287 79 5 chr13 85202465 85203061 -34541837 - L1M4 LINE L1 -2964 3182 2543 2122 234 62 47 chr13 85203075 85203521 -34541377 - L1MC3 LINE L1 -1331 6454 5991 1372 203 17 84 chr13 85203521 85203939 -34540959 - MLT1B LTR MaLR 0 390 1 2122 234 62 47 chr13 85203939 85204231 -34540667 - L1MC3 LINE L1 -1794 5991 5705 5151 25 0 0 chr13 85204611 85205209 -34539689 - L1PA3 LINE L1 -3 6152 5555 376 130 0 0 chr13 85205212 85205281 -34539617 + L1P LINE L1 4643 4711 -1435 314 308 107 6 chr13 85205474 85205643 -34539255 - L2 LINE L2 -707 2607 2422 531 303 38 4 chr13 85205650 85205914 -34538984 - L1MC3 LINE L1 -746 5400 5128 4624 159 33 4 chr13 85205960 85207302 -34537596 + L1MA3 LINE L1 4377 5761 -544 2022 99 3 0 chr13 85207595 85207888 -34537010 + L1MA3 LINE L1 5797 6090 -215 517 336 94 8 chr13 85207971 85208236 -34536662 - HERV16 LTR ERVL -2591 2405 2118 612 326 21 5 chr13 85209135 85209325 -34535573 - HERV16 LTR ERVL -4802 194 2 839 331 65 18 chr13 85209346 85209730 -34535168 - LTR16A LTR ERVL -21 429 28 417 388 48 16 chr13 85209884 85210193 -34534705 - MLT1I LTR MaLR -35 374 56 335 336 83 21 chr13 85210268 85210509 -34534389 + L2 LINE L2 717 972 -2342 347 282 61 0 chr13 85210704 85210835 -34534063 - MIR SINE MIR -28 234 96 396 321 57 93 chr13 85210986 85211544 -34533354 + L2 LINE L2 1365 1902 -1412 21 0 0 0 chr13 85211622 85211643 -34533255 + AT_rich Low_complexity Low_complexity 1 21 0 1920 120 3 3 chr13 85211645 85211955 -34532943 + AluSg SINE Alu 1 310 0 189 417 45 0 chr13 85214243 85214399 -34530499 - L2 LINE L2 -7 3265 3103 195 42 0 0 chr13 85214672 85214696 -34530202 + (CA)n Simple_repeat Simple_repeat 1 24 0 301 335 104 48 chr13 85215347 85215616 -34529282 + L1MEc LINE L1 289 572 -5824 1674 236 3 3 chr13 85215630 85215990 -34528908 + MLT1A1 LTR MaLR 6 365 0 334 259 139 50 chr13 85215992 85216193 -34528705 + L1MEc LINE L1 581 799 -5597 8031 200 61 16 chr13 85216670 85218348 -34526550 + MER52A LTR ERV1 2 1755 0 2428 215 31 8 chr13 85218470 85218991 -34525907 + Tigger1 DNA MER2_type 7 539 -1879 505 236 18 0 chr13 85219231 85219341 -34525557 + Tigger7 DNA MER2_type 1 112 -593 23 54 0 0 chr13 85220054 85220091 -34524807 + AT_rich Low_complexity Low_complexity 1 37 0 1712 153 192 0 chr13 85220203 85220562 -34524336 + MSTA LTR MaLR 1 428 0 542 150 35 6 chr13 85220795 85220968 -34523930 + (TA)n Simple_repeat Simple_repeat 2 179 0 313 315 0 11 chr13 85220987 85221079 -34523819 + L1MC4 LINE L1 6613 6703 -1339 302 247 37 0 chr13 85221048 85221129 -34523769 - L1MCa LINE L1 -4358 2068 1985 * 185 207 0 17 chr13 85221159 85221217 -34523681 + (CATA)n Simple_repeat Simple_repeat 3 59 0 682 309 46 50 chr13 85221233 85221650 -34523248 + L1MC4a LINE L1 6408 6822 -986 213 241 0 19 chr13 85221650 85221704 -34523194 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 483 145 86 26 chr13 85223569 85223686 -34521212 + MER53 DNA DNA 2 125 -64 313 222 0 0 chr13 85223743 85223806 -34521092 - L1MC4 LINE L1 -1339 6703 6641 1510 197 3 14 chr13 85224476 85224771 -34520127 + AluJb SINE Alu 1 292 -20 4413 256 33 27 chr13 85224772 85227025 -34517873 - L1MA7 LINE L1 -13 6482 4244 230 0 33 0 chr13 85227025 85227055 -34517843 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 4413 256 33 27 chr13 85227055 85228261 -34516637 - L1MA7 LINE L1 -2251 4244 56 419 139 0 13 chr13 85228261 85228340 -34516558 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 1704 169 7 0 chr13 85228340 85228613 -34516285 - AluSx SINE Alu -37 275 1 348 210 0 0 chr13 85228614 85228676 -34516222 - L1MA7 LINE L1 -6217 64 3 21 71 0 0 chr13 85228839 85228881 -34516017 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr13 85229119 85229164 -34515734 + AT_rich Low_complexity Low_complexity 1 45 0 352 208 14 14 chr13 85229356 85229428 -34515470 - MLT1F1 LTR MaLR -429 138 67 877 89 58 20 chr13 85229540 85229711 -34515187 - L1MA2 LINE L1 -104 6200 6027 229 188 62 16 chr13 85229679 85229743 -34515155 + L1MA10 LINE L1 6263 6329 -5 * 186 307 13 53 chr13 85230545 85230620 -34514278 - L2 LINE L2 -50 3263 3192 265 272 15 29 chr13 85230803 85230939 -34513959 + A-rich Low_complexity Low_complexity 5 138 0 23 0 0 0 chr13 85230939 85230962 -34513936 + AT_rich Low_complexity Low_complexity 1 23 0 207 181 0 69 chr13 85231014 85231086 -34513812 + A-rich Low_complexity Low_complexity 1 67 0 29 0 0 0 chr13 85231735 85231764 -34513134 + AT_rich Low_complexity Low_complexity 1 29 0 1636 253 74 70 chr13 85231766 85232786 -34512112 + L1MC5 LINE L1 6538 7532 -429 252 0 0 0 chr13 85233130 85233158 -34511740 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2352 76 0 0 chr13 85234761 85235062 -34509836 + AluY SINE Alu 1 301 -10 21 0 0 0 chr13 85236542 85236563 -34508335 + AT_rich Low_complexity Low_complexity 1 21 0 3417 174 51 4 chr13 85237011 85237719 -34507179 + L1MA4 LINE L1 5559 6299 -1 359 283 87 57 chr13 85239883 85240007 -34504891 + MLT1H1 LTR MaLR 231 350 -205 741 204 6 32 chr13 85240007 85240164 -34504734 - FRAM SINE Alu -13 153 1 359 283 87 57 chr13 85240164 85240328 -34504570 + MLT1H1 LTR MaLR 350 537 -18 43892 37 3 1 chr13 85240732 85246866 -34498032 + L1PA3 LINE L1 9 6152 -3 23 0 0 0 chr13 85246866 85246889 -34498009 + AT_rich Low_complexity Low_complexity 1 23 0 525 211 82 23 chr13 85247599 85247839 -34497059 - MLT1D LTR MaLR 0 505 188 201 39 0 0 chr13 85247903 85247929 -34496969 + (CA)n Simple_repeat Simple_repeat 1 26 0 2099 109 14 3 chr13 85248173 85248466 -34496432 + AluSg SINE Alu 4 299 -11 290 263 0 13 chr13 85250312 85250388 -34494510 + CT-rich Low_complexity Low_complexity 4 78 0 679 211 128 48 chr13 85250413 85250664 -34494234 - L1MC2 LINE L1 -11 6333 6063 1062 243 37 101 chr13 85251412 85252149 -34492749 + MER52A LTR ERV1 655 1470 -285 691 279 0 0 chr13 85252152 85252310 -34492588 + MER52A LTR ERV1 1598 1755 0 27 49 0 0 chr13 85252328 85252369 -34492529 + AT_rich Low_complexity Low_complexity 1 41 0 212 333 13 26 chr13 85254319 85254395 -34490503 + MIR SINE MIR 69 144 -64 1989 141 3 0 chr13 85254413 85254712 -34490186 - AluSx SINE Alu -12 300 1 312 229 0 83 chr13 85254852 85254951 -34489947 - L1MC4 LINE L1 -1339 6703 6612 1879 98 84 31 chr13 85254951 85255238 -34489660 - AluSx SINE Alu -10 302 1 25 83 0 0 chr13 85256389 85256449 -34488449 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr13 85256494 85256515 -34488383 + AT_rich Low_complexity Low_complexity 1 21 0 1414 213 79 34 chr13 85256900 85257281 -34487617 - MLT1D LTR MaLR 0 505 108 1423 212 10 24 chr13 85257498 85257629 -34487269 + AluJo SINE Alu 1 132 -180 315 0 0 0 chr13 85257629 85257664 -34487234 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1423 212 10 24 chr13 85257664 85257825 -34487073 + AluJo SINE Alu 132 289 -23 251 28 28 0 chr13 85257830 85257866 -34487032 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 241 114 0 0 chr13 85257894 85257938 -34486960 + L1MA8 LINE L1 6244 6287 -4 337 279 31 62 chr13 85257967 85258096 -34486802 - L1MC4 LINE L1 -1304 6738 6614 319 322 0 0 chr13 85258020 85258110 -34486788 + L1MC4 LINE L1 6614 6703 -1339 * 23 54 0 0 chr13 85258220 85258257 -34486641 + AT_rich Low_complexity Low_complexity 1 37 0 477 340 59 56 chr13 85258355 85258711 -34486187 + MLT2F LTR ERVL 101 457 -206 415 317 79 32 chr13 85258955 85259346 -34485552 + L1M4 LINE L1 4375 4778 -1368 1415 235 53 31 chr13 85259554 85260044 -34484854 - MLT1D LTR MaLR -4 501 1 522 0 0 0 chr13 85261783 85261841 -34483057 + (TG)n Simple_repeat Simple_repeat 2 59 0 27 49 0 0 chr13 85264589 85264630 -34480268 + AT_rich Low_complexity Low_complexity 1 41 0 2083 110 0 10 chr13 85264826 85265118 -34479780 - AluSc SINE Alu -20 289 1 387 60 0 0 chr13 85265465 85265515 -34479383 + (TG)n Simple_repeat Simple_repeat 2 51 0 23 54 0 0 chr13 85265861 85265898 -34479000 + AT_rich Low_complexity Low_complexity 1 37 0 384 200 0 0 chr13 85266501 85266591 -34478307 + GA-rich Low_complexity Low_complexity 2 91 0 213 94 0 0 chr13 85266696 85266728 -34478170 + (GA)n Simple_repeat Simple_repeat 2 33 0 291 207 83 66 chr13 85266728 85266849 -34478049 - MLT2D LTR ERVL -20 500 275 545 230 16 0 chr13 85266855 85266981 -34477917 - MLT2B1 LTR ERVL -386 134 7 212 308 0 0 chr13 85267414 85267466 -34477432 + polypyrimidine Low_complexity Low_complexity 3 54 0 965 254 74 49 chr13 85267468 85267940 -34476958 - Charlie4a DNA MER1_type 0 508 25 5556 111 101 81 chr13 85269510 85271290 -34473608 + pTR5 LTR ERV1 743 2438 0 25 0 0 0 chr13 85271543 85271568 -34473330 + AT_rich Low_complexity Low_complexity 1 25 0 1953 96 13 36 chr13 85271576 85271877 -34473021 + AluY SINE Alu 1 294 -17 1643 190 0 10 chr13 85272012 85272323 -34472575 + AluJb SINE Alu 1 308 -4 206 353 97 21 chr13 85273925 85274163 -34470735 + L2 LINE L2 2359 2614 -700 2548 155 42 63 chr13 85274193 85274747 -34470151 - MLT2B3 LTR ERVL -12 542 1 2197 111 0 0 chr13 85274838 85275135 -34469763 - AluSq SINE Alu -16 297 1 500 249 162 39 chr13 85275310 85275643 -34469255 + L1ME3A LINE L1 5657 6030 -140 2094 86 10 33 chr13 85276274 85276575 -34468323 - AluY SINE Alu -17 294 1 229 273 0 0 chr13 85277456 85277511 -34467387 + (TATG)n Simple_repeat Simple_repeat 2 56 0 202 404 38 6 chr13 85277548 85277731 -34467167 + L2 LINE L2 2330 2518 -796 4036 193 28 14 chr13 85277872 85278922 -34465976 - L1M2 LINE L1 -745 5401 4461 2663 191 21 38 chr13 85278920 85279229 -34465669 + L1MA7 LINE L1 5520 5833 -458 * 180 0 0 0 chr13 85279229 85279249 -34465649 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2401 77 0 22 chr13 85279255 85279568 -34465330 + AluY SINE Alu 5 310 -1 2663 191 21 38 chr13 85279568 85279862 -34465036 + L1MA7 LINE L1 5838 6120 -171 27 81 0 0 chr13 85279884 85279946 -34464952 + AT_rich Low_complexity Low_complexity 1 62 0 1327 232 48 72 chr13 85280509 85281026 -34463872 - MLT1D LTR MaLR 0 505 1 230 250 0 0 chr13 85282481 85282529 -34462369 - HAL1b LINE L1 -443 905 858 26 74 0 0 chr13 85282844 85282898 -34462000 + AT_rich Low_complexity Low_complexity 1 54 0 258 315 100 8 chr13 85283205 85283335 -34461563 + L2 LINE L2 1264 1405 -1909 1064 290 119 41 chr13 85283339 85284082 -34460816 + L2 LINE L2 1754 2609 -705 281 315 81 0 chr13 85284127 85284238 -34460660 + L2 LINE L2 3190 3309 -4 385 272 96 56 chr13 85285127 85285377 -34459521 - Charlie2 DNA MER1_type -2516 266 7 327 343 116 6 chr13 85285738 85285910 -34458988 + MIR SINE MIR 1 191 -71 1254 214 107 42 chr13 85286257 85286686 -34458212 - MSTB2 LTR MaLR 0 457 1 22 70 0 0 chr13 85286887 85286930 -34457968 + AT_rich Low_complexity Low_complexity 1 43 0 757 347 19 16 chr13 85287104 85287415 -34457483 + L1PA13 LINE L1 73 384 -6403 230 384 7 7 chr13 85287673 85287811 -34457087 + L1PA13 LINE L1 1384 1521 -5266 535 289 91 0 chr13 85288483 85288680 -34456218 + L1PA13 LINE L1 3102 3316 -3481 21 71 0 0 chr13 85288688 85288730 -34456168 + AT_rich Low_complexity Low_complexity 1 42 0 477 194 0 0 chr13 85288733 85288826 -34456072 + L1MA5 LINE L1 6208 6300 0 28 29 0 0 chr13 85289149 85289184 -34455714 + AT_rich Low_complexity Low_complexity 1 35 0 610 306 132 50 chr13 85289760 85290909 -34453989 + HAL1 LINE L1 331 1573 -934 389 288 110 5 chr13 85291020 85291211 -34453687 - HAL1 LINE L1 -710 1797 1587 601 107 0 0 chr13 85291361 85291445 -34453453 - AluSq/x SINE Alu -205 107 24 27 49 0 0 chr13 85291636 85291677 -34453221 + AT_rich Low_complexity Low_complexity 1 41 0 1202 249 95 34 chr13 85292087 85292560 -34452338 + MLT1D LTR MaLR 4 505 0 242 253 25 0 chr13 85292747 85292826 -34452072 + L1ME LINE L1 36 116 -5954 5986 176 30 2 chr13 85293138 85294196 -34450702 - MSTA-int LTR MaLR -563 1088 1 1837 158 121 3 chr13 85294196 85294575 -34450323 - MSTA LTR MaLR -4 424 1 262 170 2 0 chr13 85294957 85295014 -34449884 + L1MA7 LINE L1 6230 6278 -13 27 49 0 0 chr13 85295031 85295072 -34449826 + AT_rich Low_complexity Low_complexity 1 41 0 27 87 0 0 chr13 85295260 85295329 -34449569 + AT_rich Low_complexity Low_complexity 1 69 0 2060 102 0 7 chr13 85295625 85295936 -34448962 - AluY SINE Alu 0 309 1 366 346 65 22 chr13 85296000 85296416 -34448482 - L1M4 LINE L1 -2079 4067 3634 285 268 160 0 chr13 85296800 85297013 -34447885 - L1M4 LINE L1 -3711 2435 2189 1161 193 133 39 chr13 85297038 85297370 -34447528 + MLT1A1 LTR MaLR 1 363 -2 262 237 11 32 chr13 85297436 85297529 -34447369 + T-rich Low_complexity Low_complexity 2 92 0 2561 166 50 118 chr13 85297674 85298336 -34446562 - LTR35 LTR ERV1 0 618 2 367 256 112 78 chr13 85298343 85298375 -34446523 - LTR35-int LTR ERV1 0 6676 6647 1968 142 0 0 chr13 85298375 85298670 -34446228 - AluSx SINE Alu -17 295 1 367 256 112 78 chr13 85298670 85298895 -34446003 - LTR35-int LTR ERV1 -29 6647 6410 28 0 0 0 chr13 85298914 85298942 -34445956 + AT_rich Low_complexity Low_complexity 1 28 0 2036 124 3 10 chr13 85299010 85299309 -34445589 + AluSp SINE Alu 1 297 -16 282 115 0 19 chr13 85299387 85299439 -34445459 - LTR35-int LTR ERV1 -285 6046 5996 7273 197 72 67 chr13 85299653 85300924 -34443974 - LTR35-int LTR ERV1 -548 5398 4135 2138 107 3 0 chr13 85300924 85301213 -34443685 - AluSp SINE Alu -18 295 6 7273 197 72 67 chr13 85301213 85302681 -34442217 - LTR35-int LTR ERV1 -1811 4135 1843 1293 234 53 107 chr13 85302769 85303282 -34441616 - HUERS-P1 LTR ERV1 -4122 3415 2931 3676 200 15 49 chr13 85303297 85304475 -34440423 - HUERS-P1 LTR ERV1 -2594 2286 1142 2271 100 0 0 chr13 85304475 85304776 -34440122 - AluSq SINE Alu -12 301 1 3676 200 15 49 chr13 85304776 85304927 -34439971 - HUERS-P1 LTR ERV1 -3738 1142 987 272 350 71 7 chr13 85305399 85305539 -34439359 - HUERS-P1 LTR ERV1 -5359 587 439 2956 147 36 72 chr13 85305576 85305754 -34439144 - LTR35 LTR ERV1 0 618 435 1461 159 8 0 chr13 85305754 85305999 -34438899 - AluJb SINE Alu -63 249 3 2956 147 36 72 chr13 85305999 85306461 -34438437 - LTR35 LTR ERV1 -183 435 1 346 325 80 32 chr13 85306507 85306818 -34438080 - L1M4c LINE L1 -4558 2005 1680 338 266 70 58 chr13 85306835 85307052 -34437846 - L1M4c LINE L1 -4801 1581 1255 1828 184 30 0 chr13 85307102 85307439 -34437459 + MER7A DNA MER2_type 1 345 -1 394 96 27 0 chr13 85307980 85308053 -34436845 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 23 0 0 0 chr13 85308590 85308613 -34436285 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 85309057 85309078 -34435820 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr13 85309492 85309562 -34435336 + AT_rich Low_complexity Low_complexity 1 70 0 200 200 0 0 chr13 85309687 85309727 -34435171 + T-rich Low_complexity Low_complexity 1 40 0 623 168 0 15 chr13 85311749 85311886 -34433012 + L1MA4 LINE L1 6165 6299 -1 24 32 0 0 chr13 85312078 85312109 -34432789 + AT_rich Low_complexity Low_complexity 1 31 0 2151 61 68 0 chr13 85312118 85312396 -34432502 + AluY SINE Alu 1 297 -14 1785 170 24 27 chr13 85312465 85312841 -34432057 + THE1C LTR MaLR 1 375 0 3343 133 83 14 chr13 85312841 85313389 -34431509 + THE1C-int LTR MaLR 1 590 -990 2108 142 25 8 chr13 85313389 85313525 -34431373 - THE1C LTR MaLR 0 375 243 237 33 0 0 chr13 85313525 85313555 -34431343 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2108 142 25 8 chr13 85313555 85313785 -34431113 - THE1C LTR MaLR -132 243 3 3343 133 83 14 chr13 85313785 85313799 -34431099 + THE1C-int LTR MaLR 590 602 -978 853 220 88 0 chr13 85313801 85314051 -34430847 - L1 LINE L1 -772 5374 5103 419 298 29 53 chr13 85314052 85314428 -34430470 + L1MEc LINE L1 2211 2577 -4144 2321 167 10 7 chr13 85314432 85314839 -34430059 - L1PA16 LINE L1 -412 5754 5347 2269 133 24 34 chr13 85314839 85315251 -34429647 + L1PA16 LINE L1 5754 6163 -3 1754 271 34 25 chr13 85315269 85315726 -34429172 + L1MEc LINE L1 2533 3000 -3540 2022 126 3 0 chr13 85315726 85316036 -34428862 + AluSx SINE Alu 1 311 0 1754 271 34 25 chr13 85316036 85316345 -34428553 + L1MEc LINE L1 3000 3305 -3235 2240 71 0 77 chr13 85316475 85316812 -34428086 + AluY SINE Alu 1 311 0 37 76 0 0 chr13 85317182 85317261 -34427637 + AT_rich Low_complexity Low_complexity 1 79 0 32 0 0 0 chr13 85317303 85317335 -34427563 + AT_rich Low_complexity Low_complexity 1 32 0 2130 185 38 7 chr13 85317648 85318069 -34426829 - Tigger2a DNA MER2_type 0 434 1 201 204 20 0 chr13 85318350 85318399 -34426499 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr13 85318564 85318588 -34426310 + AT_rich Low_complexity Low_complexity 1 24 0 9486 194 32 24 chr13 85318753 85319145 -34425753 - L1MA8 LINE L1 -246 6045 5658 186 43 0 0 chr13 85319145 85319168 -34425730 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 9486 194 32 24 chr13 85319168 85321729 -34423169 - L1MA8 LINE L1 -633 5658 3070 3028 272 92 34 chr13 85321727 85322645 -34422253 + MSTD-int LTR MaLR 699 1669 -66 * 558 226 26 0 chr13 85322645 85322760 -34422138 + FLAM_A SINE Alu 1 118 -24 28 29 0 0 chr13 85322769 85322804 -34422094 + AT_rich Low_complexity Low_complexity 1 35 0 754 247 99 96 chr13 85322870 85323254 -34421644 + MSTD LTR MaLR 12 396 0 5359 203 45 53 chr13 85323266 85324411 -34420487 + L1MA8 LINE L1 3808 4921 -1370 561 194 8 0 chr13 85324411 85324535 -34420363 + L1MA4 LINE L1 6170 6294 -6 5359 203 45 53 chr13 85324535 85325699 -34419199 + L1MA8 LINE L1 4921 6093 -198 25 51 0 0 chr13 85325862 85325901 -34418997 + AT_rich Low_complexity Low_complexity 1 39 0 601 296 21 11 chr13 85325917 85326106 -34418792 + MIR SINE MIR 11 201 -61 2917 3 0 0 chr13 85326790 85327108 -34417790 + AluYb8 SINE Alu 1 318 0 2041 217 42 51 chr13 85327701 85328305 -34416593 - L1MC2 LINE L1 0 7765 6138 1892 238 69 32 chr13 85328365 85328869 -34416029 - L1MC3 LINE L1 -892 6893 6371 4459 65 35 7 chr13 85328896 85329897 -34415001 - MER11A LTR ERVK 0 1266 1 784 223 22 44 chr13 85329902 85330131 -34414767 - L1MC3 LINE L1 -1445 6340 6117 22 35 0 0 chr13 85330131 85330160 -34414738 + AT_rich Low_complexity Low_complexity 1 29 0 246 342 135 35 chr13 85330682 85330942 -34413956 - MLT1I LTR MaLR -77 332 47 21 57 0 0 chr13 85331137 85331172 -34413726 + AT_rich Low_complexity Low_complexity 1 35 0 933 257 50 103 chr13 85331601 85332346 -34412552 + MER67B LTR ERV1 1 660 -1 1908 119 10 45 chr13 85332550 85332861 -34412037 + AluSx SINE Alu 1 300 -12 725 277 10 10 chr13 85333527 85333722 -34411176 - L1ME1 LINE L1 -10 6156 5962 230 344 21 11 chr13 85334163 85334256 -34410642 - L2 LINE L2 -32 3281 3188 328 316 123 28 chr13 85334294 85334506 -34410392 + MIR SINE MIR 17 248 -14 1202 230 39 125 chr13 85334575 85335245 -34409653 + LTR9 LTR ERV1 1 612 0 39297 155 43 20 chr13 85335257 85335930 -34408968 + HUERS-P3 LTR ERV1 10 666 -8253 2067 129 3 0 chr13 85335930 85336232 -34408666 - AluSx SINE Alu -9 303 1 39297 155 43 20 chr13 85336232 85336981 -34407917 + HUERS-P3 LTR ERV1 666 1396 -7523 191 227 120 0 chr13 85336981 85337056 -34407842 - MER5C DNA MER1_type -240 84 1 39297 155 43 20 chr13 85337056 85342307 -34402591 + HUERS-P3 LTR ERV1 1396 6912 -2007 1358 165 28 16 chr13 85342525 85342779 -34402119 + HUERS-P3 LTR ERV1 8659 8915 -4 1293 222 36 159 chr13 85342783 85343383 -34401515 + LTR9 LTR ERV1 1 505 -107 1363 52 11 0 chr13 85343383 85343557 -34401341 - L1PA3 LINE L1 -3 6152 5977 1293 222 36 159 chr13 85343557 85343654 -34401244 + LTR9 LTR ERV1 505 612 0 30 59 0 0 chr13 85344004 85344055 -34400843 + AT_rich Low_complexity Low_complexity 1 51 0 29 60 0 0 chr13 85344130 85344180 -34400718 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr13 85344298 85344327 -34400571 + AT_rich Low_complexity Low_complexity 1 29 0 283 366 79 33 chr13 85344645 85344982 -34399916 + L2 LINE L2 2735 3088 -225 21 0 0 0 chr13 85345000 85345021 -34399877 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 85346270 85346308 -34398590 + AT_rich Low_complexity Low_complexity 1 38 0 203 236 0 36 chr13 85346363 85346418 -34398480 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 328 266 89 49 chr13 85346660 85346875 -34398023 - L1ME LINE L1 -475 5695 5478 207 100 0 0 chr13 85346875 85346905 -34397993 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 331 280 92 24 chr13 85346951 85347158 -34397740 - L1ME LINE L1 -692 5478 5258 1780 133 0 25 chr13 85348160 85348439 -34396459 + AluSc SINE Alu 1 272 -37 283 240 58 89 chr13 85349012 85349043 -34395855 - L1MB8 LINE L1 -263 5915 5885 1891 105 11 0 chr13 85349043 85349222 -34395676 - AluSg SINE Alu -7 303 119 180 0 0 0 chr13 85349222 85349242 -34395656 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1891 105 11 0 chr13 85349242 85349328 -34395570 - AluSg SINE Alu -191 119 35 283 240 58 89 chr13 85349328 85349521 -34395377 - L1MB8 LINE L1 -293 5885 5698 3533 243 37 10 chr13 85349583 85350493 -34394405 - L1MD2 LINE L1 -2 6357 5423 2016 210 67 25 chr13 85350511 85351067 -34393831 + L1MA9 LINE L1 5699 6277 -35 644 137 0 0 chr13 85351069 85351171 -34393727 - AluJb SINE Alu 0 312 211 1796 143 12 0 chr13 85351177 85351436 -34393462 + MER1B DNA MER1_type 77 338 -1 398 221 15 92 chr13 85351437 85351568 -34393330 + MER58B DNA MER1_type 221 341 0 355 304 164 5 chr13 85351579 85351786 -34393112 - MLT1G1 LTR MaLR -353 242 3 2879 172 20 7 chr13 85352174 85352766 -34392132 - L1MA6 LINE L1 -467 5833 5231 2501 162 21 8 chr13 85352766 85353236 -34391662 + L1MA6 LINE L1 5819 6294 -6 1169 165 13 0 chr13 85353527 85353757 -34391141 + L1MA4 LINE L1 6062 6294 -6 27 73 0 0 chr13 85353791 85353846 -34391052 + AT_rich Low_complexity Low_complexity 1 55 0 183 80 0 0 chr13 85354104 85354129 -34390769 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1402 187 0 28 chr13 85354184 85354468 -34390430 - AluJb SINE Alu 0 312 37 1080 179 22 0 chr13 85354469 85354698 -34390200 - L1MA4 LINE L1 -5 6295 6062 25 65 0 0 chr13 85355670 85355716 -34389182 + AT_rich Low_complexity Low_complexity 1 46 0 232 156 0 0 chr13 85356159 85356204 -34388694 - L1MA9 LINE L1 -35 6277 6233 2642 181 4 2 chr13 85356213 85356678 -34388220 + MST-int LTR MaLR 24 489 -1162 213 121 0 0 chr13 85356973 85357006 -34387892 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr13 85357719 85357744 -34387154 + AT_rich Low_complexity Low_complexity 1 25 0 623 334 62 25 chr13 85358091 85358411 -34386487 - L2 LINE L2 -8 3305 2974 243 265 0 15 chr13 85359166 85359234 -34385664 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 1909 144 63 9 chr13 85359281 85359614 -34385284 - MSTB1 LTR MaLR -47 385 35 714 258 32 39 chr13 85359851 85360130 -34384768 - L1MD3 LINE L1 -932 7063 6787 303 104 0 0 chr13 85360166 85360214 -34384684 + (TG)n Simple_repeat Simple_repeat 1 48 0 1738 266 95 61 chr13 85360215 85360431 -34384467 - L1MC3 LINE L1 -1225 6978 6771 2222 46 3 11 chr13 85360431 85360744 -34384154 + AluY SINE Alu 1 311 0 1738 266 95 61 chr13 85360744 85360864 -34384034 - L1MC3 LINE L1 -1432 6771 6657 446 158 50 30 chr13 85360864 85360965 -34383933 + L1MA6 LINE L1 6194 6296 -4 1738 266 95 61 chr13 85360965 85361546 -34383352 - L1MC3 LINE L1 -1546 6657 6028 845 266 126 55 chr13 85361558 85362094 -34382804 + MER68 LTR ERV1 6 555 -7 882 268 52 29 chr13 85362104 85362741 -34382157 - L1MC3 LINE L1 -755 5809 5383 233 244 0 0 chr13 85362742 85362787 -34382111 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 257 237 92 0 chr13 85362787 85362863 -34382035 - L1MC3 LINE L1 -1196 5368 5286 767 219 115 0 chr13 85362920 85363112 -34381786 - MLT1E1 LTR MaLR -315 339 126 2926 266 82 23 chr13 85363193 85364921 -34379977 - L1MC3 LINE L1 -2711 3853 2050 1797 201 16 0 chr13 85364931 85365300 -34379598 - L1MA6 LINE L1 -5 6295 5921 3141 164 29 42 chr13 85365300 85365946 -34378952 + L1MA6 LINE L1 5300 5937 -363 1805 262 43 43 chr13 85365995 85366962 -34377936 - L1MC3 LINE L1 -4764 1800 845 1726 178 0 3 chr13 85366998 85367296 -34377602 - AluJb SINE Alu -14 298 2 504 307 67 48 chr13 85367620 85367995 -34376903 - L1MC3 LINE L1 -5623 422 41 22 80 0 0 chr13 85368007 85368057 -34376841 + AT_rich Low_complexity Low_complexity 1 50 0 361 225 185 40 chr13 85368114 85368314 -34376584 + L1ME3 LINE L1 5932 6160 -2 48 77 0 0 chr13 85368314 85368418 -34376480 + AT_rich Low_complexity Low_complexity 1 104 0 990 311 49 20 chr13 85369108 85369657 -34375241 - L1MC4a LINE L1 -1805 6003 5439 750 272 54 52 chr13 85369676 85370121 -34374777 - L1ME3 LINE L1 -1 6161 5710 952 290 97 18 chr13 85370127 85370920 -34373978 - L1MC4a LINE L1 -3149 2997 2142 21 57 0 0 chr13 85370936 85370971 -34373927 + AT_rich Low_complexity Low_complexity 1 35 0 835 260 4 4 chr13 85370972 85371199 -34373699 - L1ME3 LINE L1 -538 5704 5478 5325 224 57 37 chr13 85371206 85371938 -34372960 + L1MC3 LINE L1 6241 6957 -828 207 0 0 0 chr13 85371938 85371961 -34372937 + (TG)n Simple_repeat Simple_repeat 2 24 0 5325 224 57 37 chr13 85371961 85372003 -34372895 + L1MC3 LINE L1 6957 6997 -788 195 100 0 0 chr13 85372003 85372033 -34372865 + (TA)n Simple_repeat Simple_repeat 1 30 0 5325 224 57 37 chr13 85372033 85372756 -34372142 + L1MC3 LINE L1 6997 7769 -16 287 279 0 0 chr13 85372762 85372842 -34372056 - MLT1H1 LTR MaLR -488 67 1 25 31 0 0 chr13 85373809 85373841 -34371057 + AT_rich Low_complexity Low_complexity 1 32 0 2052 139 0 0 chr13 85374157 85374466 -34370432 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr13 85375258 85375279 -34369619 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr13 85376286 85376312 -34368586 + (A)n Simple_repeat Simple_repeat 1 26 0 596 257 178 7 chr13 85377752 85378033 -34366865 - L2 LINE L2 -316 2997 2668 1868 112 70 3 chr13 85378287 85378573 -34366325 - AluY SINE Alu -6 305 1 21 0 0 0 chr13 85378575 85378596 -34366302 + AT_rich Low_complexity Low_complexity 1 21 0 249 256 0 0 chr13 85378735 85378817 -34366081 + (TAAA)n Simple_repeat Simple_repeat 2 83 0 1637 178 35 38 chr13 85379220 85379586 -34365312 - MLT1A1 LTR MaLR 0 365 1 29 84 0 0 chr13 85379763 85379834 -34365064 + AT_rich Low_complexity Low_complexity 1 71 0 2437 223 43 15 chr13 85379982 85380659 -34364239 - L1MB7 LINE L1 -9 6175 5480 2126 266 42 27 chr13 85380666 85381550 -34363348 + L1M4 LINE L1 3949 4845 -1301 1347 198 46 17 chr13 85381554 85382002 -34362896 + MLT2B2 LTR ERVL 3 515 0 1217 226 15 92 chr13 85382006 85382343 -34362555 - HERVL-B1 LTR ERVL -5035 729 419 580 143 10 10 chr13 85382345 85382443 -34362455 + MER4A LTR ERV1 1 98 -566 1790 153 23 23 chr13 85382478 85382785 -34362113 + MER4A LTR ERV1 358 664 0 2522 137 84 56 chr13 85382788 85383440 -34361458 + MER4A-int LTR ERV1 1 840 -5758 1102 251 45 7 chr13 85383488 85383775 -34361123 + MER4A-int LTR ERV1 1851 2148 -4183 1893 131 7 24 chr13 85383775 85384073 -34360825 + MER4A LTR ERV1 372 664 0 961 254 46 27 chr13 85384103 85384427 -34360471 - HERVL-B1 LTR ERVL -5311 343 36 1374 201 19 44 chr13 85384427 85384745 -34360153 + AluJb SINE Alu 1 310 -2 961 254 46 27 chr13 85384745 85384782 -34360116 - HERVL-B1 LTR ERVL -5618 36 1 340 154 0 0 chr13 85384784 85384845 -34360053 - MLT2B1 LTR ERVL -5 515 450 1243 241 32 69 chr13 85384849 85385231 -34359667 + L1M4 LINE L1 4874 5232 -914 1964 152 41 39 chr13 85385231 85385594 -34359304 + THE1B LTR MaLR 1 364 0 1243 241 32 69 chr13 85385594 85385746 -34359152 + L1M4 LINE L1 5232 5388 -758 21 57 0 0 chr13 85385832 85385867 -34359031 + AT_rich Low_complexity Low_complexity 1 35 0 27 73 0 0 chr13 85385983 85386038 -34358860 + AT_rich Low_complexity Low_complexity 1 55 0 650 147 83 0 chr13 85386088 85386197 -34358701 + FLAM_C SINE Alu 1 118 -25 24 67 0 0 chr13 85386197 85386242 -34358656 + AT_rich Low_complexity Low_complexity 1 45 0 1205 179 17 80 chr13 85387681 85388031 -34356867 + AluJo SINE Alu 1 331 0 2481 111 19 5 chr13 85389627 85389996 -34354902 + THE1C LTR MaLR 1 374 -1 1462 234 31 19 chr13 85390563 85390922 -34353976 + MLT1A2 LTR MaLR 1 363 -11 1453 161 18 4 chr13 85391018 85391364 -34353534 - L1M2 LINE L1 -744 5402 5096 1540 213 6 12 chr13 85391375 85391713 -34353185 + L1M2 LINE L1 5445 5780 -520 4467 56 4 0 chr13 85391783 85392339 -34352559 + LTR6B LTR ERV1 1 558 0 21 0 0 0 chr13 85392363 85392384 -34352514 + AT_rich Low_complexity Low_complexity 1 21 0 1771 156 57 28 chr13 85393376 85393729 -34351169 + THE1C LTR MaLR 1 363 -12 31 58 0 0 chr13 85393776 85393828 -34351070 + AT_rich Low_complexity Low_complexity 1 52 0 328 326 60 71 chr13 85394467 85394902 -34349996 + ERVL LTR ERVL 4943 5372 -392 303 28 0 0 chr13 85395260 85395296 -34349602 + (TG)n Simple_repeat Simple_repeat 2 37 0 463 75 0 140 chr13 85395781 85395834 -34349064 - MADE1 DNA Mariner 0 80 44 2227 106 3 0 chr13 85395834 85396137 -34348761 + AluSx SINE Alu 1 304 -8 463 75 0 140 chr13 85396137 85396176 -34348722 - MADE1 DNA Mariner -36 44 1 25 0 0 0 chr13 85396262 85396287 -34348611 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr13 85396805 85396829 -34348069 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 674 209 0 0 chr13 85396833 85396962 -34347936 - FRAM SINE Alu -37 139 11 527 323 93 33 chr13 85397064 85397147 -34347751 - L2 LINE L2 -16 3297 3220 2268 108 0 3 chr13 85397147 85397453 -34347445 - AluSq SINE Alu -8 305 1 527 323 93 33 chr13 85397453 85397482 -34347416 - L2 LINE L2 -93 3220 3194 2197 166 39 2 chr13 85397482 85397898 -34347000 + MER95 LTR ERV 1 431 0 527 323 93 33 chr13 85397898 85398384 -34346514 - L2 LINE L2 -119 3194 2672 2959 67 8 0 chr13 85398542 85398917 -34345981 - HERVL LTR ERVL -1286 4368 3991 * 11075 83 1 4 chr13 85398916 85400508 -34344390 - HERVL LTR ERVL -3742 1912 325 609 217 0 0 chr13 85400508 85400623 -34344275 + AluJb SINE Alu 183 297 -15 1687 157 35 28 chr13 85400696 85401090 -34343808 - L1MB1 LINE L1 -3 6165 5769 2400 226 25 8 chr13 85401095 85401625 -34343273 + MER44D DNA MER2_type 11 604 -1 5067 162 44 24 chr13 85401832 85402994 -34341904 - L1MA4 LINE L1 -4 6296 5106 4664 195 37 16 chr13 85403072 85404161 -34340737 + L1 LINE L1 3687 4797 -1349 1245 182 28 0 chr13 85404161 85404408 -34340490 + LTR60 LTR ERV1 1 254 -332 201 74 0 0 chr13 85404408 85404435 -34340463 + (A)n Simple_repeat Simple_repeat 1 27 0 1059 212 92 20 chr13 85404457 85404750 -34340148 + LTR60 LTR ERV1 229 542 -44 969 169 54 92 chr13 85404615 85404929 -34339969 + TAR1 Satellite telomeric 12 313 -1798 * 1255 171 8 25 chr13 85404929 85404957 -34339941 + L1 LINE L1 4794 4821 -1325 3111 132 14 2 chr13 85404957 85405458 -34339440 + MER84 LTR ERV1 1 507 0 1255 171 8 25 chr13 85405458 85405668 -34339230 + L1 LINE L1 4821 5028 -1118 736 180 102 180 chr13 85405672 85406006 -34338892 + MER52A LTR ERV1 663 970 -785 649 259 132 21 chr13 85405997 85406186 -34338712 + MER52A LTR ERV1 1096 1305 -450 * 637 218 59 63 chr13 85406205 85406463 -34338435 + MER52A LTR ERV1 339 1305 -10 487 202 0 0 chr13 85406623 85406722 -34338176 + L1 LINE L1 5041 5139 -1007 383 342 81 34 chr13 85406803 85407101 -34337797 + L2 LINE L2 3002 3313 0 21 0 0 0 chr13 85408312 85408333 -34336565 + AT_rich Low_complexity Low_complexity 1 21 0 4858 94 24 0 chr13 85408418 85409123 -34335775 + LTR30 LTR ERV1 1 722 0 26 30 0 0 chr13 85409177 85409210 -34335688 + AT_rich Low_complexity Low_complexity 1 33 0 229 330 87 29 chr13 85409463 85409669 -34335229 - LTR67 LTR ERVL -8 549 332 21 0 0 0 chr13 85410087 85410108 -34334790 + AT_rich Low_complexity Low_complexity 1 21 0 1372 229 65 42 chr13 85410124 85410525 -34334373 - MER92A LTR ERV1 -2 410 1 1146 214 76 7 chr13 85411759 85412048 -34332850 + L1MCa LINE L1 22 330 -6096 2573 207 40 12 chr13 85412054 85412659 -34332239 - L1PA16 LINE L1 -1439 4707 4086 4051 188 48 5 chr13 85412662 85413945 -34330953 + L1PA16 LINE L1 4701 6040 -126 4313 136 26 58 chr13 85413945 85414717 -34330181 + L1PA8 LINE L1 223 969 -5492 11073 96 10 0 chr13 85414717 85417122 -34327776 + L1PA8 LINE L1 4066 6472 -15 459 52 0 0 chr13 85417131 85417189 -34327709 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 790 170 7 0 chr13 85417191 85417332 -34327566 + L1PA16 LINE L1 6025 6166 0 2495 229 45 54 chr13 85417348 85418433 -34326465 + L1MCb LINE L1 275 1334 -4856 682 261 50 52 chr13 85419094 85419403 -34325495 + MER67D LTR ERV1 2 339 -243 1285 148 46 0 chr13 85419403 85419619 -34325279 - L1PA16 LINE L1 -155 6011 5786 278 114 0 23 chr13 85419634 85419678 -34325220 + MER67C LTR ERV1 347 389 -321 753 241 41 75 chr13 85419708 85420053 -34324845 - MER31-int LTR ERV1 -2187 2749 2417 21 57 0 0 chr13 85420561 85420596 -34324302 + AT_rich Low_complexity Low_complexity 1 35 0 361 278 57 114 chr13 85421805 85422262 -34322636 - L1MC4 LINE L1 -791 7170 6740 399 342 146 18 chr13 85422287 85422623 -34322275 - L1MC4a LINE L1 -1476 6332 5954 288 120 0 0 chr13 85422627 85422677 -34322221 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 920 266 68 66 chr13 85422715 85422815 -34322083 + MLT1C LTR MaLR 9 107 -360 2575 47 0 0 chr13 85422815 85423116 -34321782 + AluY SINE Alu 1 301 -10 920 266 68 66 chr13 85423116 85423470 -34321428 + MLT1C LTR MaLR 107 464 -3 243 0 0 0 chr13 85423473 85423500 -34321398 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 324 81 12 chr13 85423662 85423921 -34320977 - L1MC4a LINE L1 -2278 5530 5254 585 333 99 25 chr13 85424853 85425480 -34319418 - L1MC4a LINE L1 -1396 4750 4078 320 328 70 6 chr13 85425554 85425725 -34319173 - L1MC4a LINE L1 -2169 3977 3796 27 73 0 0 chr13 85425809 85425864 -34319034 + AT_rich Low_complexity Low_complexity 1 55 0 714 268 127 53 chr13 85426234 85426760 -34318138 - MER34C LTR ERV1 0 585 21 413 163 9 46 chr13 85427139 85427226 -34317672 + AluJo SINE Alu 56 135 -167 25 0 0 0 chr13 85427897 85427922 -34316976 + AT_rich Low_complexity Low_complexity 1 25 0 259 130 37 3 chr13 85428921 85428979 -34315919 - Tigger4(Zombi) DNA MER2_type -14 2717 2660 1181 222 8 16 chr13 85428990 85429242 -34315656 - AluJo SINE Alu -62 250 1 435 306 82 49 chr13 85430097 85430518 -34314380 + LTR33A LTR ERVL 4 473 -50 225 94 0 0 chr13 85430722 85430754 -34314144 + (A)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr13 85431065 85431102 -34313796 + AT_rich Low_complexity Low_complexity 1 37 0 2208 162 20 2 chr13 85431182 85431578 -34313320 + MER57A LTR ERV1 1 403 0 227 181 14 28 chr13 85431989 85432061 -34312837 + (TATAA)n Simple_repeat Simple_repeat 4 74 0 7341 41 0 6 chr13 85432266 85433269 -34311629 + L1PA5 LINE L1 5157 6154 0 2005 254 47 42 chr13 85433814 85435120 -34309778 + L1MD3 LINE L1 472 2392 -4172 4975 126 26 8 chr13 85435156 85435957 -34308941 - L1PA13 LINE L1 0 6163 5348 583 214 77 33 chr13 85435958 85436140 -34308758 - MLT1B LTR MaLR -200 190 1 390 284 36 10 chr13 85436144 85436338 -34308560 + L1M4 LINE L1 3757 3955 -2191 1141 218 52 9 chr13 85436363 85436707 -34308191 + L1MD3 LINE L1 3547 3905 -2659 857 231 12 5 chr13 85436723 85436948 -34307950 + L1MD3 LINE L1 6044 6273 -489 700 273 92 40 chr13 85436965 85437335 -34307563 - MLT1D LTR MaLR -116 389 1 315 96 0 64 chr13 85437407 85437501 -34307397 + (TA)n Simple_repeat Simple_repeat 2 89 0 594 252 0 0 chr13 85437501 85437644 -34307254 + L1MD3 LINE L1 6646 6788 -1625 495 221 18 0 chr13 85437654 85437767 -34307131 + L1MC3 LINE L1 7649 7763 -22 519 275 70 18 chr13 85437804 85438135 -34306763 + L1MCb LINE L1 3088 3435 -3129 311 278 229 17 chr13 85438330 85438632 -34306266 + L1MCb LINE L1 3940 4305 -2259 22 56 0 0 chr13 85439067 85439103 -34305795 + AT_rich Low_complexity Low_complexity 1 36 0 2182 109 0 0 chr13 85439237 85439552 -34305346 + AluSx SINE Alu 1 315 0 27 29 0 0 chr13 85439661 85439695 -34305203 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr13 85440444 85440474 -34304424 + AT_rich Low_complexity Low_complexity 1 30 0 284 308 196 0 chr13 85440501 85440644 -34304254 - MIR SINE MIR -14 248 78 415 117 0 0 chr13 85440951 85441011 -34303887 + AluJ/FRAM SINE Alu 233 292 -20 23 68 0 0 chr13 85441094 85441138 -34303760 + AT_rich Low_complexity Low_complexity 1 44 0 362 315 122 53 chr13 85441220 85441712 -34303186 + L1MC4a LINE L1 5332 5857 -1951 453 19 0 0 chr13 85441801 85441855 -34303043 + (CA)n Simple_repeat Simple_repeat 2 55 0 24 0 0 0 chr13 85442198 85442222 -34302676 + AT_rich Low_complexity Low_complexity 1 24 0 2111 114 7 7 chr13 85442223 85442529 -34302369 + AluY SINE Alu 1 306 -5 39 38 0 0 chr13 85443289 85443342 -34301556 + AT_rich Low_complexity Low_complexity 1 53 0 232 203 0 102 chr13 85444129 85444188 -34300710 - AluJ/FLAM SINE Alu -202 100 48 23 0 0 0 chr13 85444990 85445013 -34299885 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 85445411 85445432 -34299466 + AT_rich Low_complexity Low_complexity 1 21 0 1931 151 48 20 chr13 85446352 85446703 -34298195 - THE1C LTR MaLR 0 375 15 1237 256 85 43 chr13 85447424 85447659 -34297239 - LTR40a LTR ERVL 0 519 295 1559 227 8 32 chr13 85447659 85448033 -34296865 + MLT1A1 LTR MaLR 1 365 0 1237 256 85 43 chr13 85448033 85448289 -34296609 - LTR40a LTR ERVL -224 295 7 284 343 105 6 chr13 85448321 85448502 -34296396 - HERVL40 LTR ERVL -27 5503 5305 * 573 345 12 8 chr13 85448496 85448745 -34296153 - MER89-int LTR ERV1 -305 6496 6247 1931 156 137 8 chr13 85448864 85449243 -34295655 + MSTA LTR MaLR 1 428 0 8000 195 22 9 chr13 85449243 85450872 -34294026 + MSTA-int LTR MaLR 1 1651 0 1912 169 102 8 chr13 85450872 85451263 -34293635 + MSTA LTR MaLR 1 428 0 888 258 53 28 chr13 85451790 85452220 -34292678 - L1M4 LINE L1 -886 5260 4820 1824 260 60 30 chr13 85452288 85452762 -34292136 - L1MC4 LINE L1 -745 5681 5705 2181 121 16 0 chr13 85452762 85453068 -34291830 - AluSx SINE Alu -1 311 1 1824 260 60 30 chr13 85453068 85453993 -34290905 - L1MC4 LINE L1 -720 5706 4810 2045 147 0 0 chr13 85454000 85454293 -34290605 - AluSx SINE Alu -19 293 1 1354 230 53 41 chr13 85454295 85454786 -34290112 - L1MC4 LINE L1 -1820 4606 4110 318 269 42 34 chr13 85454792 85454911 -34289987 - L1MC4 LINE L1 -3965 2461 2342 1317 257 36 85 chr13 85455036 85456069 -34288829 - L1MC4 LINE L1 -4396 2211 1007 1109 161 0 28 chr13 85456600 85456780 -34288118 + Charlie3 DNA MER1_type 1 175 -2535 33 0 0 0 chr13 85456995 85457028 -34287870 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr13 85457667 85457702 -34287196 + AT_rich Low_complexity Low_complexity 1 35 0 306 302 9 9 chr13 85457868 85457974 -34286924 - MLT1F-int LTR MaLR -1585 150 45 993 287 80 71 chr13 85458001 85458538 -34286360 - MLT1F LTR MaLR 0 542 1 22 56 0 0 chr13 85460313 85460349 -34284549 + AT_rich Low_complexity Low_complexity 1 36 0 30 27 0 0 chr13 85460504 85460541 -34284357 + AT_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr13 85460929 85460971 -34283927 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr13 85461026 85461063 -34283835 + AT_rich Low_complexity Low_complexity 1 37 0 256 310 163 8 chr13 85461269 85461398 -34283500 + L1MB4 LINE L1 5510 5658 -2150 4318 222 49 11 chr13 85461505 85461516 -34283382 + L1 LINE L1 4200 4209 -1953 3290 201 27 11 chr13 85461516 85462261 -34282637 - L1MB1 LINE L1 0 6168 5412 4318 222 49 11 chr13 85462261 85463436 -34281462 + L1MB1 LINE L1 4209 5414 -748 22 0 0 0 chr13 85464160 85464182 -34280716 + AT_rich Low_complexity Low_complexity 1 22 0 233 155 35 0 chr13 85464277 85464335 -34280563 + L1MA8 LINE L1 4465 4524 -1622 5895 154 158 11 chr13 85464335 85466032 -34278866 + L1PB1 LINE L1 3824 5900 -251 1886 157 7 3 chr13 85466032 85466338 -34278560 - AluJb SINE Alu -5 307 1 5895 154 158 11 chr13 85466338 85466634 -34278264 + L1PB1 LINE L1 5900 6151 0 4951 175 31 33 chr13 85466622 85467358 -34277540 + L1MA8 LINE L1 4492 5228 -1063 * 309 198 47 0 chr13 85467358 85467444 -34277454 + L1MB4 LINE L1 6089 6178 -2 4951 175 31 33 chr13 85467444 85467702 -34277196 + L1MA8 LINE L1 5228 5485 -806 1381 198 3 45 chr13 85467702 85468015 -34276883 + AluJb SINE Alu 1 300 -2 4951 175 31 33 chr13 85468015 85468164 -34276734 + L1MA8 LINE L1 5485 5633 -658 1873 192 40 23 chr13 85468164 85468591 -34276307 + Tigger2a DNA MER2_type 1 434 0 4951 175 31 33 chr13 85468591 85469242 -34275656 + L1MA8 LINE L1 5633 6286 -5 4030 65 2 21 chr13 85469267 85469802 -34275096 + LTR17 LTR ERV1 256 780 0 6323 68 77 24 chr13 85469802 85471531 -34273367 + HERV17 LTR ERV1 1 1864 -6762 5967 62 4 7 chr13 85471530 85472287 -34272611 + HERV17 LTR ERV1 1681 2435 -6191 * 2212 248 58 23 chr13 85472552 85473657 -34271241 - L1MC/D LINE L1 -712 5530 4384 1935 156 0 0 chr13 85473758 85474053 -34270845 + AluSx SINE Alu 1 295 -17 4107 151 48 98 chr13 85474193 85475367 -34269531 - L1MA4 LINE L1 -6 6294 5174 684 244 16 93 chr13 85475365 85475623 -34269275 + L1MDa LINE L1 237 474 -6066 * 203 59 0 29 chr13 85476400 85476434 -34268464 + (CAAAG)n Simple_repeat Simple_repeat 3 35 0 27 0 0 0 chr13 85477510 85477537 -34267361 + AT_rich Low_complexity Low_complexity 1 27 0 2505 218 29 19 chr13 85478178 85478797 -34266101 - L1MC3 LINE L1 -15 7770 7146 284 122 0 20 chr13 85478797 85478846 -34266052 - MLT2C2 LTR ERVL 0 520 473 931 261 85 0 chr13 85478894 85479189 -34265709 - MLT2C2 LTR ERVL -49 415 96 14271 167 27 21 chr13 85479207 85481224 -34263674 - L1MA2 LINE L1 0 7723 5720 249 57 0 0 chr13 85481224 85481259 -34263639 + (TG)n Simple_repeat Simple_repeat 2 36 0 14271 167 27 21 chr13 85481259 85484037 -34260861 - L1MA2 LINE L1 -2003 5720 2902 761 219 12 0 chr13 85484038 85484202 -34260696 + L1PBa LINE L1 1488 1653 -5210 716 262 30 5 chr13 85484238 85484440 -34260458 - L1MC3 LINE L1 -1025 6760 6554 890 243 25 18 chr13 85484441 85484721 -34260177 - L1MC3 LINE L1 -2496 5546 5265 239 377 0 0 chr13 85485154 85485231 -34259667 - L2 LINE L2 -665 2649 2573 639 183 8 8 chr13 85485999 85486130 -34258768 + L1PA16 LINE L1 6034 6164 -2 24 53 0 0 chr13 85487669 85487707 -34257191 + AT_rich Low_complexity Low_complexity 1 38 0 414 167 0 0 chr13 85488844 85488910 -34255988 + AluS SINE Alu 1 66 -247 3758 185 10 36 chr13 85488912 85489630 -34255268 - MER72 LTR ERV1 -23 699 1 348 24 0 0 chr13 85490092 85490133 -34254765 + (GA)n Simple_repeat Simple_repeat 2 42 0 2361 209 38 2 chr13 85490185 85490692 -34254206 + LTR45 LTR ERV1 1 525 0 219 324 81 9 chr13 85490713 85490824 -34254074 + L3 LINE CR1 966 1084 -493 4031 137 17 5 chr13 85490834 85491478 -34253420 + MER39B LTR ERV1 1 652 -1 423 333 224 11 chr13 85492019 85492376 -34252522 + L2 LINE L2 2881 3313 0 21 36 0 0 chr13 85492879 85492907 -34251991 + AT_rich Low_complexity Low_complexity 1 28 0 184 204 37 37 chr13 85493271 85493325 -34251573 + L2 LINE L2 3005 3058 -214 444 147 22 0 chr13 85493608 85493744 -34251154 + (TA)n Simple_repeat Simple_repeat 2 140 0 777 149 14 7 chr13 85493827 85493968 -34250930 + L1PA16 LINE L1 6024 6165 -1 180 111 0 0 chr13 85493977 85494004 -34250894 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 26 30 0 0 chr13 85494194 85494227 -34250671 + AT_rich Low_complexity Low_complexity 1 33 0 745 127 33 0 chr13 85494930 85495175 -34249723 - L1MA4 LINE L1 -9 6291 5856 398 138 15 0 chr13 85495282 85495347 -34249551 - AluS SINE Alu -235 66 1 * 1251 270 96 5 chr13 85495347 85495412 -34249486 + MLT1E3 LTR MaLR 183 240 -384 2299 51 40 0 chr13 85495412 85495708 -34249190 + AluY SINE Alu 1 308 -3 1251 270 96 5 chr13 85495708 85496046 -34248852 + MLT1E3 LTR MaLR 240 624 0 25 31 0 0 chr13 85496421 85496453 -34248445 + AT_rich Low_complexity Low_complexity 1 32 0 468 308 70 51 chr13 85496890 85497263 -34247635 + MLT1I LTR MaLR 1 380 -29 651 236 180 0 chr13 85497278 85497456 -34247442 - MER58C DNA MER1_type -1 214 5 643 281 107 0 chr13 85497602 85497826 -34247072 + LTR16C LTR ERVL 240 487 -4 1550 93 62 16 chr13 85498789 85499046 -34245852 + L1MA5A LINE L1 6026 6294 -3 1576 194 0 14 chr13 85499057 85499345 -34245553 + AluJo SINE Alu 4 287 -25 23 54 0 0 chr13 85499346 85499383 -34245515 + AT_rich Low_complexity Low_complexity 1 37 0 240 259 120 37 chr13 85499670 85499778 -34245120 + L2 LINE L2 2615 2731 -583 724 267 33 9 chr13 85499782 85499992 -34244906 + MIR SINE MIR 48 262 0 479 316 78 77 chr13 85500002 85500113 -34244785 + L2 LINE L2 2752 2861 -452 832 249 6 0 chr13 85500113 85500290 -34244608 + MER45A DNA AcHobo 1 178 0 479 316 78 77 chr13 85500290 85500737 -34244161 + L2 LINE L2 2861 3312 -1 446 252 118 69 chr13 85501040 85501670 -34243228 + L1MEc LINE L1 2041 2663 -3552 1448 258 141 34 chr13 85501693 85503521 -34241377 + L1MEc LINE L1 3585 5668 -567 1127 234 159 63 chr13 85503552 85504031 -34240867 + MLT1F1 LTR MaLR 18 567 0 263 227 80 0 chr13 85504178 85504253 -34240645 + L2 LINE L2 2123 2203 -1111 1338 265 56 56 chr13 85504253 85504860 -34240038 + L2 LINE L2 2370 2976 -338 402 252 78 0 chr13 85504881 85504984 -34239914 - MER5A DNA MER1_type -76 113 3 579 237 40 20 chr13 85504984 85505136 -34239762 + MER105 DNA DNA 44 198 -6 209 266 87 96 chr13 85505161 85505196 -34239702 + L2 LINE L2 3009 3043 -270 2065 209 71 34 chr13 85505196 85505786 -34239112 - LTR9 LTR ERV1 0 612 1 209 266 87 96 chr13 85505786 85505979 -34238919 + L2 LINE L2 3043 3235 -78 2047 172 83 8 chr13 85506213 85506609 -34238289 + MSTB LTR MaLR 1 426 0 5109 170 58 21 chr13 85506609 85507099 -34237799 + MSTB-int LTR MaLR 1 471 -1180 1878 127 7 25 chr13 85507099 85507383 -34237515 + AluSx SINE Alu 1 279 -33 216 0 0 0 chr13 85507385 85507409 -34237489 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5109 170 58 21 chr13 85507409 85507923 -34236975 + MSTB-int LTR MaLR 471 1046 -605 1631 146 34 58 chr13 85508074 85508369 -34236529 - AluSx SINE Alu -24 288 1 22 0 0 0 chr13 85509115 85509137 -34235761 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr13 85509532 85509556 -34235342 + (T)n Simple_repeat Simple_repeat 1 24 0 185 217 200 0 chr13 85509932 85509992 -34234906 + MIR3 SINE MIR 106 177 -31 21 57 0 0 chr13 85510247 85510282 -34234616 + AT_rich Low_complexity Low_complexity 1 35 0 459 307 186 31 chr13 85511028 85511416 -34233482 + L1MC4 LINE L1 7578 8025 -17 366 222 61 20 chr13 85512354 85512453 -34232445 + MER106B DNA MER1_type 53 155 -904 30 27 0 0 chr13 85512453 85512490 -34232408 + AT_rich Low_complexity Low_complexity 1 37 0 373 360 0 0 chr13 85512568 85512679 -34232219 + L2 LINE L2 3150 3260 -12 1961 224 83 38 chr13 85513608 85514138 -34230760 - MLT2B3 LTR ERVL 0 554 1 39 50 0 0 chr13 85514494 85514554 -34230344 + AT_rich Low_complexity Low_complexity 1 60 0 634 280 84 31 chr13 85515447 85515672 -34229226 - MIR SINE MIR -23 239 3 416 325 43 100 chr13 85515677 85516028 -34228870 + L2 LINE L2 2939 3269 -3 * 481 340 97 46 chr13 85516023 85516250 -34228648 + L3 LINE CR1 604 857 -720 1498 140 0 18 chr13 85516250 85516472 -34228426 + AluJb SINE Alu 84 301 -11 481 340 97 46 chr13 85516472 85516594 -34228304 + L3 LINE CR1 857 971 -606 1092 175 99 8 chr13 85516647 85516899 -34227999 + L1MC4a LINE L1 6820 7094 -714 192 353 129 0 chr13 85517144 85517260 -34227638 + MIR SINE MIR 16 146 -62 616 228 87 55 chr13 85517397 85517709 -34227189 - L1M4 LINE L1 -1545 4601 4280 1383 240 156 2 chr13 85517714 85518164 -34226734 + L1ME3 LINE L1 5635 6153 -9 863 165 47 24 chr13 85518196 85518366 -34226532 - L1MC2 LINE L1 0 6344 6171 1272 88 10 10 chr13 85518570 85518764 -34226134 - L1PB2 LINE L1 0 6151 5958 259 337 134 11 chr13 85518885 85519072 -34225826 + HAL1 LINE L1 365 574 -1933 437 220 0 22 chr13 85519072 85519163 -34225735 + L2 LINE L2 3203 3291 -22 1328 243 144 76 chr13 85519202 85520087 -34224811 + HAL1 LINE L1 1132 2116 -391 2057 129 3 3 chr13 85520087 85520381 -34224517 + AluSx SINE Alu 1 294 -18 1328 243 144 76 chr13 85520381 85520652 -34224246 + HAL1 LINE L1 2116 2367 -140 28 61 0 0 chr13 85520734 85520783 -34224115 + AT_rich Low_complexity Low_complexity 1 49 0 387 240 23 23 chr13 85520985 85521156 -34223742 + (TA)n Simple_repeat Simple_repeat 1 171 0 434 236 22 22 chr13 85521184 85521482 -34223416 + (TA)n Simple_repeat Simple_repeat 1 298 0 304 229 37 64 chr13 85521507 85521616 -34223282 - L1MC4 LINE L1 -1322 6720 6615 326 227 10 52 chr13 85521654 85521751 -34223147 - L1MC4 LINE L1 -1333 6709 6617 335 171 13 0 chr13 85521755 85521831 -34223067 + (TA)n Simple_repeat Simple_repeat 2 78 0 364 206 82 10 chr13 85522883 85522980 -34221918 + MER112 DNA MER1_type 129 232 -28 258 364 64 0 chr13 85523042 85523152 -34221746 + MIR3 SINE MIR 47 163 -45 3887 14 0 0 chr13 85523512 85523955 -34220943 + L1PA2 LINE L1 5713 6155 0 234 0 0 0 chr13 85523964 85523990 -34220908 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr13 85524893 85524914 -34219984 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr13 85526472 85526496 -34218402 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2684 135 20 5 chr13 85527057 85527501 -34217397 + Tigger1 DNA MER2_type 1968 2418 0 563 147 15 48 chr13 85527544 85527674 -34217224 + MLT1D LTR MaLR 308 500 -5 1351 211 0 0 chr13 85528444 85528695 -34216203 - L1PB4 LINE L1 -2 6154 5904 348 342 52 85 chr13 85529876 85530183 -34214715 - L2 LINE L2 -8 3264 2968 561 146 61 4 chr13 85530190 85530324 -34214574 - L1PA12 LINE L1 -85 6069 5934 331 252 69 23 chr13 85530718 85530849 -34214049 - MIR SINE MIR -11 251 115 537 227 22 65 chr13 85530865 85531050 -34213848 + MER5B DNA MER1_type 2 178 0 21 36 0 0 chr13 85531189 85531217 -34213681 + AT_rich Low_complexity Low_complexity 1 28 0 2936 147 36 0 chr13 85532276 85532746 -34212152 + MSTB-int LTR MaLR 1165 1651 0 2720 137 12 9 chr13 85532747 85533169 -34211729 + MSTB LTR MaLR 2 424 -2 257 184 0 0 chr13 85533172 85533221 -34211677 + MIR SINE MIR 107 155 -107 1468 180 68 24 chr13 85535457 85535751 -34209147 + AluJo SINE Alu 1 307 -5 236 238 8 74 chr13 85536009 85536131 -34208767 + L1ME4a LINE L1 6007 6120 -1 265 301 11 0 chr13 85536212 85536305 -34208593 + L2 LINE L2 1750 1843 -1471 331 219 42 42 chr13 85536582 85536678 -34208220 - L2 LINE L2 -8 3305 3210 291 280 201 11 chr13 85536692 85536881 -34208017 - L2 LINE L2 -279 3034 2810 7576 161 13 12 chr13 85538336 85540470 -34204428 + L1PB2 LINE L1 3772 5904 -247 1649 94 0 5 chr13 85540932 85541144 -34203754 - AluSc SINE Alu -26 283 73 1564 182 49 39 chr13 85541270 85542578 -34202320 - SVA Other Other -518 868 432 528 113 12 0 chr13 85542588 85542668 -34202230 - AluSc SINE Alu -225 84 4 624 51 0 0 chr13 85543739 85543818 -34201080 + L1PB4 LINE L1 2944 3022 -3124 * 8735 170 15 17 chr13 85543813 85546354 -34198544 + L1PB4 LINE L1 3622 6155 -1 357 264 23 31 chr13 85546481 85546610 -34198288 + HAL1 LINE L1 1518 1645 -862 22 0 0 0 chr13 85546635 85546657 -34198241 + AT_rich Low_complexity Low_complexity 1 22 0 315 250 25 0 chr13 85547142 85547222 -34197676 + L1MEc LINE L1 1259 1340 -5056 189 0 0 0 chr13 85547246 85547267 -34197631 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 5833 249 78 39 chr13 85547267 85551431 -34193467 + L1M2 LINE L1 10 4339 -2509 270 0 0 0 chr13 85551431 85551461 -34193437 + (T)n Simple_repeat Simple_repeat 1 30 0 1449 29 0 0 chr13 85551873 85552046 -34192852 - L1PA3 LINE L1 0 6155 5983 2014 196 6 3 chr13 85552238 85552601 -34192297 - MLT1A1 LTR MaLR 0 365 2 22 0 0 0 chr13 85552914 85552936 -34191962 + AT_rich Low_complexity Low_complexity 1 22 0 1925 169 0 0 chr13 85553028 85553336 -34191562 + AluJo SINE Alu 1 308 -4 354 254 136 8 chr13 85553415 85553533 -34191365 - MLT1J LTR MaLR -332 179 47 378 211 63 21 chr13 85553807 85553902 -34190996 - MER77 LTR ERV1 -445 160 62 213 222 0 0 chr13 85553922 85553958 -34190940 - MIR SINE MIR -124 84 49 * 225 384 78 41 chr13 85553954 85554225 -34190673 - L3 LINE CR1 -455 1122 842 341 324 9 9 chr13 85557426 85557531 -34187367 + MIR3 SINE MIR 98 202 -6 22 35 0 0 chr13 85558414 85558443 -34186455 + AT_rich Low_complexity Low_complexity 1 29 0 236 336 56 14 chr13 85559434 85559577 -34185321 + MIR3 SINE MIR 60 208 0 2181 112 0 3 chr13 85559751 85560046 -34184852 + AluSp SINE Alu 1 294 -19 422 226 212 77 chr13 85560320 85560594 -34184304 - L2 LINE L2 -51 3262 2952 1950 191 57 24 chr13 85561737 85562117 -34182781 + MSTB1 LTR MaLR 1 398 -34 2376 94 0 0 chr13 85562117 85562426 -34182472 - AluY SINE Alu -2 309 1 1950 191 57 24 chr13 85562426 85562463 -34182435 + MSTB1 LTR MaLR 398 432 0 9520 164 55 86 chr13 85562464 85564072 -34180826 + L1MC3 LINE L1 5563 7164 -621 285 304 0 0 chr13 85564072 85564151 -34180747 + MLT1F1 LTR MaLR 47 125 -442 9520 164 55 86 chr13 85564151 85564737 -34180161 + L1MC3 LINE L1 7164 7766 -19 1059 271 65 35 chr13 85564824 85565315 -34179583 - MLT1J LTR MaLR 0 511 6 2837 108 24 5 chr13 85566238 85566656 -34178242 - MSTA LTR MaLR -2 426 1 495 0 0 0 chr13 85566693 85566748 -34178150 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1143 186 4 12 chr13 85566748 85566995 -34177903 - L1MA4 LINE L1 -14 6286 6042 13419 39 0 0 chr13 85567102 85568751 -34176147 - L1P LINE L1 -3269 2877 1229 6535 24 1 0 chr13 85568740 85570017 -34174881 + L1PA3 LINE L1 4732 6009 -146 * 267 318 178 45 chr13 85570349 85571218 -34173680 - L2 LINE L2 -573 2741 1685 224 30 30 0 chr13 85571218 85571251 -34173647 + (TTG)n Simple_repeat Simple_repeat 2 35 0 267 318 178 45 chr13 85571251 85571514 -34173384 - L2 LINE L2 -1629 1685 1458 641 215 149 76 chr13 85572004 85572320 -34172578 - MER58B DNA MER1_type 0 341 3 295 327 29 10 chr13 85572496 85572600 -34172298 + MIR SINE MIR 35 140 -122 207 0 0 0 chr13 85572737 85572760 -34172138 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2109 121 7 0 chr13 85572763 85573052 -34171846 - AluSx SINE Alu -21 291 1 265 242 55 11 chr13 85576005 85576096 -34168802 - HAL1b LINE L1 -508 840 746 287 297 88 20 chr13 85576367 85576515 -34168383 - HAL1 LINE L1 -851 1656 1499 346 275 72 48 chr13 85576665 85576832 -34168066 - HAL1 LINE L1 -1201 1306 1136 320 309 167 24 chr13 85577524 85577734 -34167164 + L2 LINE L2 2712 2951 -363 189 74 0 0 chr13 85577863 85577890 -34167008 + (CA)n Simple_repeat Simple_repeat 2 28 0 233 383 61 35 chr13 85577896 85578157 -34166741 + L2 LINE L2 2986 3253 -19 21 0 0 0 chr13 85579667 85579688 -34165210 + AT_rich Low_complexity Low_complexity 1 21 0 315 297 23 31 chr13 85580114 85580242 -34164656 - L2 LINE L2 0 3313 3187 1620 180 39 3 chr13 85581075 85581358 -34163540 + AluJb SINE Alu 1 293 -19 308 343 38 9 chr13 85582741 85582846 -34162052 - L2 LINE L2 -27 3286 3179 847 70 0 0 chr13 85582938 85583052 -34161846 + L1PA5 LINE L1 6041 6154 0 209 277 0 15 chr13 85586382 85586447 -34158451 + GA-rich Low_complexity Low_complexity 3 66 0 5731 147 25 5 chr13 85586449 85587312 -34157586 + L1PB2 LINE L1 4608 5517 -634 195 69 0 0 chr13 85587312 85587341 -34157557 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5731 147 25 5 chr13 85587341 85587987 -34156911 + L1PB2 LINE L1 5517 6148 -3 414 105 0 35 chr13 85587994 85588080 -34156818 + (GA)n Simple_repeat Simple_repeat 2 84 0 259 390 103 0 chr13 85588353 85588499 -34156399 - MIR SINE MIR -56 206 46 474 42 84 0 chr13 85588734 85588805 -34156093 - L1PA13 LINE L1 -5 6158 6082 2038 289 140 26 chr13 85588860 85589898 -34155000 + L2 LINE L2 1855 3085 -228 1810 148 7 11 chr13 85589898 85590181 -34154717 - AluSx SINE Alu -30 282 1 2038 289 140 26 chr13 85590181 85590440 -34154458 + L2 LINE L2 3085 3313 0 306 358 67 6 chr13 85590440 85590619 -34154279 - L2 LINE L2 -419 2895 2706 22 0 0 0 chr13 85590815 85590837 -34154061 + AT_rich Low_complexity Low_complexity 1 22 0 273 310 40 80 chr13 85593224 85593450 -34151448 + HAL1 LINE L1 1 217 -2290 456 270 159 5 chr13 85593516 85593705 -34151193 + HAL1 LINE L1 352 569 -1938 1185 252 20 63 chr13 85593719 85594068 -34150830 - MLT1G LTR MaLR -65 525 192 281 281 198 0 chr13 85594070 85594166 -34150732 + L1ME2 LINE L1 5492 5606 -558 * 521 250 94 6 chr13 85594164 85594344 -34150554 + L1ME2 LINE L1 5833 6028 -136 235 297 0 11 chr13 85594499 85594590 -34150308 + GA-rich Low_complexity Low_complexity 2 91 0 5633 119 19 12 chr13 85594638 85596123 -34148775 - L1PA16 LINE L1 0 6166 4675 248 0 31 0 chr13 85596128 85596160 -34148738 + (TC)n Simple_repeat Simple_repeat 1 33 0 1033 223 76 0 chr13 85597082 85597306 -34147592 + MIR SINE MIR 6 246 -16 535 130 15 30 chr13 85597572 85597703 -34147195 + CT-rich Low_complexity Low_complexity 4 132 0 692 219 0 0 chr13 85597712 85597835 -34147063 - FLAM_A SINE Alu -9 124 2 273 320 143 13 chr13 85597860 85598091 -34146807 + L2 LINE L2 3041 3301 -12 192 77 0 0 chr13 85598134 85598160 -34146738 + (TTA)n Simple_repeat Simple_repeat 3 28 0 2461 238 69 37 chr13 85598562 85600061 -34144837 + L1ME1 LINE L1 4382 5941 -225 1799 128 0 0 chr13 85600061 85600303 -34144595 + AluSg SINE Alu 21 262 -48 2461 238 69 37 chr13 85600303 85600532 -34144366 + L1ME1 LINE L1 5941 6161 -5 1685 187 7 10 chr13 85600576 85600875 -34144023 - AluJo SINE Alu -12 300 3 358 97 0 16 chr13 85601025 85601087 -34143811 - L1PA7 LINE L1 -3 6151 6091 4830 99 9 92 chr13 85601189 85602088 -34142810 - Tigger1 DNA MER2_type -502 1916 1093 323 94 0 38 chr13 85602088 85602141 -34142757 - Tigger1 DNA MER2_type -1697 721 671 266 269 21 54 chr13 85602430 85602523 -34142375 + L3 LINE CR1 1486 1575 -2 233 194 0 65 chr13 85602736 85602798 -34142100 - MLT1I LTR MaLR -8 401 344 207 0 0 0 chr13 85602876 85602899 -34141999 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2037 88 0 61 chr13 85602902 85603197 -34141701 - AluSg SINE Alu -33 277 1 313 291 92 15 chr13 85603222 85603428 -34141470 - MLT1J2 LTR MaLR -216 234 13 667 315 51 0 chr13 85604610 85604807 -34140091 - MIR SINE MIR -51 211 5 261 0 0 0 chr13 85605828 85605857 -34139041 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 315 0 0 0 chr13 85605856 85605891 -34139007 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 85606163 85606184 -34138714 + AT_rich Low_complexity Low_complexity 1 21 0 2268 92 3 3 chr13 85607149 85607443 -34137455 - AluSq SINE Alu -19 294 1 213 331 184 14 chr13 85607555 85607851 -34137047 + L2 LINE L2 2914 3271 -1 303 93 0 0 chr13 85608380 85608423 -34136475 + (T)n Simple_repeat Simple_repeat 1 43 0 5157 156 19 7 chr13 85609135 85610159 -34134739 + L1PA16 LINE L1 5129 6164 -2 25 51 0 0 chr13 85610160 85610199 -34134699 + AT_rich Low_complexity Low_complexity 1 39 0 350 344 76 42 chr13 85610324 85610666 -34134232 + L1MC4 LINE L1 5716 6065 -1743 1191 160 24 38 chr13 85612039 85612326 -34132572 + L1MA4 LINE L1 6014 6296 -4 1039 202 101 0 chr13 85612469 85612667 -34132231 + MER58A DNA MER1_type 7 224 0 792 247 173 65 chr13 85614230 85614326 -34130572 + L2 LINE L2 2633 2717 -596 1516 164 9 70 chr13 85614326 85614655 -34130243 - AluJo SINE Alu -3 309 1 792 247 173 65 chr13 85614655 85615172 -34129726 + L2 LINE L2 2717 3311 -2 1029 292 61 49 chr13 85615671 85616284 -34128614 - MLT2F LTR ERVL -2 661 3 201 313 94 39 chr13 85616361 85616489 -34128409 + MIR3 SINE MIR 33 167 -41 306 154 62 15 chr13 85616659 85616724 -34128174 + L1MC5 LINE L1 7711 7778 -183 18176 186 10 49 chr13 85616728 85618878 -34126020 + L1PA15-16 LINE L1 1 2234 -4615 2098 117 21 0 chr13 85618878 85619168 -34125730 + AluSx SINE Alu 1 296 -16 18176 186 10 49 chr13 85619168 85619914 -34124984 + L1PA15-16 LINE L1 2234 3008 -3841 216 67 0 0 chr13 85619914 85619944 -34124954 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 18176 186 10 49 chr13 85619944 85622550 -34122348 + L1PA15-16 LINE L1 3008 5337 -1512 7232 160 42 22 chr13 85622706 85622892 -34122006 - L1MA4 LINE L1 -314 5986 5805 237 65 0 0 chr13 85622892 85622923 -34121975 + (TA)n Simple_repeat Simple_repeat 1 31 0 7232 160 42 22 chr13 85622923 85624814 -34120084 - L1MA4 LINE L1 -495 5805 3884 315 165 17 23 chr13 85624781 85624873 -34120025 - L1M4 LINE L1 -3378 4187 4097 * 319 263 0 0 chr13 85626572 85626652 -34118246 - L1M4 LINE L1 -3947 3618 3539 206 0 69 0 chr13 85626658 85626687 -34118211 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2368 215 76 50 chr13 85627037 85627610 -34117288 - MER77 LTR ERV1 -4 601 49 252 0 0 0 chr13 85628475 85628503 -34116395 + (TA)n Simple_repeat Simple_repeat 2 29 0 1612 189 3 20 chr13 85628573 85628874 -34116024 - AluJb SINE Alu -16 296 1 1122 230 114 111 chr13 85629246 85630280 -34114618 - L1MC5 LINE L1 -311 7650 6614 1789 97 22 11 chr13 85630499 85630766 -34114132 + L1P4 LINE L1 5420 5689 -479 1456 229 14 3 chr13 85630784 85631147 -34113751 + L1PBa LINE L1 6 372 -6491 9440 159 107 1 chr13 85631157 85634052 -34110846 + L1PBa LINE L1 902 4108 -2754 1218 208 104 3 chr13 85634596 85634904 -34109994 - MER58B DNA MER1_type 0 341 3 215 154 26 0 chr13 85635021 85635060 -34109838 + MER5A DNA MER1_type 58 97 -92 550 263 105 12 chr13 85635179 85635350 -34109548 - MER5A DNA MER1_type -1 188 2 364 250 31 39 chr13 85635353 85635481 -34109417 + MLT1L LTR MaLR 150 276 -339 344 203 0 0 chr13 85635506 85635575 -34109323 + L1MEc LINE L1 2320 2388 -4008 2227 240 98 4 chr13 85635592 85636308 -34108590 + L1MEc LINE L1 3545 4327 -1888 350 327 64 13 chr13 85637711 85637867 -34107031 + MER5A DNA MER1_type 21 184 -5 224 287 125 73 chr13 85638014 85638150 -34106748 - MIR SINE MIR -118 144 2 1825 128 65 44 chr13 85638413 85638780 -34106118 + THE1C LTR MaLR 1 375 0 1090 250 61 27 chr13 85638949 85639277 -34105621 - MER58B DNA MER1_type 0 341 3 412 100 0 0 chr13 85639920 85639980 -34104918 - L1PA10 LINE L1 -108 6060 6001 * 963 42 8 0 chr13 85639979 85640099 -34104799 + L1PA10 LINE L1 5846 5966 -202 233 385 44 0 chr13 85640774 85640865 -34104033 - L2 LINE L2 -7 3306 3212 22 0 0 0 chr13 85643052 85643074 -34101824 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr13 85643495 85643515 -34101383 + (TG)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr13 85643638 85643667 -34101231 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 85645249 85645277 -34099621 + AT_rich Low_complexity Low_complexity 1 28 0 303 161 62 3 chr13 85645395 85645467 -34099431 - L1MB1 LINE L1 0 6168 6101 1097 229 31 12 chr13 85646058 85646316 -34098582 + L1MD2 LINE L1 5555 5817 -425 281 149 194 0 chr13 85646329 85646396 -34098502 + LTR16C LTR ERVL 405 484 -7 767 234 47 70 chr13 85646513 85646770 -34098128 + L1MD2 LINE L1 6088 6338 -21 459 130 0 0 chr13 85648519 85648588 -34096310 - AluSq/x SINE Alu -180 132 64 338 214 10 61 chr13 85649069 85649167 -34095731 - L2 LINE L2 0 3313 3221 304 198 154 0 chr13 85651031 85651122 -34093776 - MIR SINE MIR -76 186 82 221 178 0 44 chr13 85651424 85651469 -34093429 + L2 LINE L2 3197 3239 -33 688 310 61 8 chr13 85652804 85653065 -34091833 - MLT1I LTR MaLR -134 275 1 2397 37 7 7 chr13 85653250 85653544 -34091354 + AluY SINE Alu 3 296 -15 275 316 17 23 chr13 85653549 85653726 -34091172 - L1MCa LINE L1 -3315 3111 2936 225 208 52 0 chr13 85653729 85653806 -34091092 + (TA)n Simple_repeat Simple_repeat 2 82 0 328 291 156 47 chr13 85653816 85654091 -34090807 - L1MCa LINE L1 -3532 2894 2590 2269 293 139 42 chr13 85654724 85656077 -34088821 - HAL1 LINE L1 -6 2501 889 195 100 0 0 chr13 85656077 85656107 -34088791 + (TG)n Simple_repeat Simple_repeat 1 30 0 2269 293 139 42 chr13 85656107 85656754 -34088144 - HAL1 LINE L1 -1618 889 306 29622 94 23 15 chr13 85657206 85658498 -34086400 + L1PA7 LINE L1 734 2014 -4140 1949 131 0 3 chr13 85658498 85658804 -34086094 - AluSx SINE Alu 0 305 1 29622 94 23 15 chr13 85658804 85659133 -34085765 + L1PA7 LINE L1 2014 2339 -3815 183 42 0 0 chr13 85659133 85659157 -34085741 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 29622 94 23 15 chr13 85659157 85662878 -34082020 + L1PA7 LINE L1 2339 6116 -38 29 60 0 0 chr13 85663941 85663991 -34080907 + AT_rich Low_complexity Low_complexity 1 50 0 1336 192 47 44 chr13 85664033 85664393 -34080505 - L1MB8 LINE L1 -10 6168 5808 3617 107 12 24 chr13 85664431 85664760 -34080138 - L1PA13 LINE L1 -8 6155 5834 1687 228 78 48 chr13 85664760 85665296 -34079602 - MLT2B3 LTR ERVL -1 553 2 3617 107 12 24 chr13 85665296 85665544 -34079354 - L1PA13 LINE L1 -329 5834 5585 938 299 10 30 chr13 85665548 85665953 -34078945 - L1MB8 LINE L1 -366 5818 5422 * 1171 251 70 39 chr13 85665938 85666561 -34078337 - L1MCa LINE L1 -4636 1971 1143 336 253 0 50 chr13 85666574 85666673 -34078225 - LTR8 LTR ERV1 -545 146 53 2185 201 17 64 chr13 85666840 85667421 -34077477 - LTR27 LTR ERV1 -80 556 3 1126 224 87 4 chr13 85667421 85667698 -34077200 - LTR27-int LTR ERV1 0 5217 4918 6170 127 25 16 chr13 85667703 85668188 -34076710 - LTR27-int LTR ERV1 -1226 3991 3512 1555 182 0 4 chr13 85668188 85668452 -34076446 - AluSx SINE Alu -49 263 1 6170 127 25 16 chr13 85668452 85668956 -34075942 - LTR27-int LTR ERV1 -1705 3512 2993 3182 182 20 72 chr13 85668965 85669658 -34075240 - MER52-int LTR ERV1 -6029 1062 406 483 231 169 36 chr13 85669646 85669871 -34075027 - MER52-int LTR ERV1 -6831 260 6 * 2440 180 129 12 chr13 85670022 85670580 -34074318 - LTR28 LTR ERV1 -422 598 1 2629 143 22 57 chr13 85671446 85671955 -34072943 - LTR8 LTR ERV1 -200 491 1 746 239 51 175 chr13 85672196 85672980 -34071918 + LTR8A LTR ERV1 34 720 -7 4240 201 38 2 chr13 85673047 85674030 -34070868 - L1PA15 LINE L1 -1 6815 5799 1992 160 19 32 chr13 85674033 85674402 -34070496 - THE1B LTR MaLR 0 364 1 10431 126 11 5 chr13 85674403 85675972 -34068926 - THE1B-int LTR MaLR -1 1579 1 417 161 25 25 chr13 85675982 85676063 -34068835 - THE1B LTR MaLR -8 367 287 11938 252 47 17 chr13 85676064 85680333 -34064565 - L1PA15 LINE L1 -1152 5645 1266 22 0 0 0 chr13 85680391 85680413 -34064485 + AT_rich Low_complexity Low_complexity 1 22 0 575 251 58 0 chr13 85682036 85682207 -34062691 + MER53 DNA DNA 9 189 0 227 191 0 0 chr13 85683065 85683107 -34061791 + GA-rich Low_complexity Low_complexity 3 44 0 2221 117 0 0 chr13 85684023 85684331 -34060567 + AluSg SINE Alu 1 308 -2 23 0 0 0 chr13 85684760 85684783 -34060115 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 85684859 85684881 -34060017 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 85684915 85684943 -34059955 + AT_rich Low_complexity Low_complexity 1 28 0 56 16 0 0 chr13 85685046 85685109 -34059789 + AT_rich Low_complexity Low_complexity 1 63 0 21 36 0 0 chr13 85685913 85685941 -34058957 + AT_rich Low_complexity Low_complexity 1 28 0 331 280 74 40 chr13 85686775 85686950 -34057948 - MLT1J2 LTR MaLR -240 210 30 24 67 0 0 chr13 85687002 85687047 -34057851 + AT_rich Low_complexity Low_complexity 1 45 0 2021 89 7 14 chr13 85688370 85688685 -34056213 - AluSc SINE Alu 0 313 1 2504 120 3 11 chr13 85689152 85689519 -34055379 + THE1B LTR MaLR 1 364 0 278 347 52 19 chr13 85689667 85689880 -34055018 - L2 LINE L2 -1269 2045 1826 21 0 0 0 chr13 85690109 85690130 -34054768 + AT_rich Low_complexity Low_complexity 1 21 0 381 283 36 24 chr13 85690414 85690665 -34054233 + L1M4 LINE L1 2607 2860 -3286 229 332 48 31 chr13 85690759 85690945 -34053953 + L1M4 LINE L1 3437 3633 -2513 1937 135 17 0 chr13 85690945 85691234 -34053664 - AluSx SINE Alu -18 294 1 229 332 48 31 chr13 85691234 85691399 -34053499 + L1M4 LINE L1 3633 3794 -2352 * 6241 247 76 49 chr13 85691390 85693324 -34051574 + L1MA4A LINE L1 85 2071 -4778 * 6350 241 96 19 chr13 85693319 85696067 -34048831 + L1MA4A LINE L1 2693 5910 -938 4957 173 21 18 chr13 85696070 85697038 -34047860 + L1MA4A LINE L1 6034 7004 -1 300 269 52 45 chr13 85697065 85697199 -34047699 + L1M4 LINE L1 3797 3931 -2215 333 311 43 38 chr13 85697284 85697493 -34047405 + L1M4 LINE L1 4103 4312 -1834 1663 166 8 91 chr13 85697543 85697855 -34047043 - MER67D LTR ERV1 -150 364 90 2201 109 0 3 chr13 85697855 85698145 -34046753 + AluSq SINE Alu 1 291 -22 207 0 0 0 chr13 85698145 85698168 -34046730 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2201 109 0 3 chr13 85698168 85698181 -34046717 + AluSq SINE Alu 291 303 -10 1663 166 8 91 chr13 85698181 85698265 -34046633 - MER67D LTR ERV1 -424 90 1 238 303 20 0 chr13 85698336 85698435 -34046463 - L1M4 LINE L1 -3302 2844 2744 291 157 0 0 chr13 85698500 85698551 -34046347 + (CATA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr13 85700143 85700173 -34044725 + AT_rich Low_complexity Low_complexity 1 30 0 1216 199 13 127 chr13 85700487 85700880 -34044018 + MLT1A1 LTR MaLR 18 365 0 2042 147 39 30 chr13 85701528 85701889 -34043009 - THE1B LTR MaLR 0 364 1 276 241 0 0 chr13 85702271 85702329 -34042569 - LTR40b LTR ERVL -25 437 380 635 135 0 0 chr13 85702334 85702430 -34042468 - MLT2C1 LTR ERVL -68 329 234 495 122 99 30 chr13 85702436 85702567 -34042331 - L1MA7 LINE L1 0 6291 6152 294 217 0 0 chr13 85702553 85702622 -34042276 - L1PB4 LINE L1 0 6156 6088 * 3974 178 24 43 chr13 85702619 85702947 -34041951 - L1MA8 LINE L1 -137 6154 5821 1932 145 0 0 chr13 85702947 85703251 -34041647 - AluSx SINE Alu 0 306 3 3974 178 24 43 chr13 85703251 85703827 -34041071 - L1MA8 LINE L1 -470 5821 5266 474 231 6 16 chr13 85703834 85704016 -34040882 + (TA)n Simple_repeat Simple_repeat 1 180 0 258 154 0 135 chr13 85704021 85704125 -34040773 - L1MC4 LINE L1 -1339 6703 6614 224 265 0 0 chr13 85704125 85704174 -34040724 + (TA)n Simple_repeat Simple_repeat 1 49 0 448 249 12 12 chr13 85704186 85704351 -34040547 + (CATA)n Simple_repeat Simple_repeat 3 167 0 265 298 12 12 chr13 85704366 85704527 -34040371 + (CATA)n Simple_repeat Simple_repeat 3 163 0 * 366 303 0 0 chr13 85704504 85704679 -34040219 + (TA)n Simple_repeat Simple_repeat 2 176 0 232 322 22 0 chr13 85704681 85704712 -34040186 - L1MC4 LINE L1 -1337 6705 6614 216 305 0 0 chr13 85704712 85704771 -34040127 + (TA)n Simple_repeat Simple_repeat 2 60 0 252 256 0 23 chr13 85704771 85704857 -34040041 + L1MC4 LINE L1 6614 6697 -1345 556 231 38 31 chr13 85704881 85705041 -34039857 + MLT1B LTR MaLR 1 161 -229 2734 13 0 6 chr13 85705053 85705364 -34039534 - AluYa5 SINE Alu -2 309 1 266 286 0 0 chr13 85705366 85705443 -34039455 - L1MA3 LINE L1 0 6305 6229 4142 184 20 6 chr13 85705444 85706293 -34038605 - L1MA8 LINE L1 -873 5273 4413 962 248 41 50 chr13 85706293 85706334 -34038564 - MLT1C LTR MaLR -151 316 276 2073 124 35 101 chr13 85706334 85706819 -34038079 - MLT2A2 LTR ERVL 0 453 1 962 248 41 50 chr13 85706819 85707096 -34037802 - MLT1C LTR MaLR -191 276 1 227 316 31 0 chr13 85707520 85707618 -34037280 + (TA)n Simple_repeat Simple_repeat 1 101 0 4980 70 22 1 chr13 85707667 85708678 -34036220 + MER11A LTR ERVK 1 1266 0 22 0 0 0 chr13 85708846 85708868 -34036030 + AT_rich Low_complexity Low_complexity 1 22 0 1445 255 14 39 chr13 85709163 85709602 -34035296 + L1ME1 LINE L1 5663 6090 -76 183 156 0 0 chr13 85709604 85709636 -34035262 + (CA)n Simple_repeat Simple_repeat 2 33 0 188 184 20 0 chr13 85710513 85710562 -34034336 + (TA)n Simple_repeat Simple_repeat 1 50 0 237 152 0 0 chr13 85710598 85710644 -34034254 - LTR66 LTR ERVL -168 442 397 279 344 0 55 chr13 85710905 85711088 -34033810 + ERVL LTR ERVL 3348 3520 -2244 427 372 0 6 chr13 85711656 85711839 -34033059 + ERVL LTR ERVL 4106 4287 -1367 2142 112 7 3 chr13 85711957 85712262 -34032636 + AluY SINE Alu 1 306 -5 30 59 0 0 chr13 85712274 85712325 -34032573 + AT_rich Low_complexity Low_complexity 1 51 0 292 279 19 10 chr13 85713524 85713628 -34031270 + CT-rich Low_complexity Low_complexity 2 106 0 1166 198 8 35 chr13 85714227 85714485 -34030413 + AluJo SINE Alu 32 282 -30 324 0 0 0 chr13 85714488 85714524 -34030374 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 39 68 0 0 chr13 85714759 85714833 -34030065 + AT_rich Low_complexity Low_complexity 1 74 0 251 254 52 46 chr13 85715157 85715330 -34029568 + L1ME3A LINE L1 1415 1588 -4808 565 307 88 10 chr13 85715824 85716312 -34028586 + L1ME3A LINE L1 2776 3301 -2914 356 363 127 14 chr13 85716459 85716883 -34028015 + L1ME3A LINE L1 3478 3949 -2266 26 30 0 0 chr13 85717199 85717232 -34027666 + AT_rich Low_complexity Low_complexity 1 33 0 624 322 37 3 chr13 85717258 85717640 -34027258 + L1ME3A LINE L1 4446 4840 -1375 585 280 33 62 chr13 85717633 85717937 -34026961 + L1ME3A LINE L1 5935 6229 -10 * 25 0 0 0 chr13 85718293 85718318 -34026580 + AT_rich Low_complexity Low_complexity 1 25 0 2757 117 3 7 chr13 85719633 85720091 -34024807 + L1P5 LINE L1 5279 5735 -416 2011 184 45 9 chr13 85720097 85720521 -34024377 - L1MA7 LINE L1 -2 6289 5851 366 323 93 69 chr13 85720918 85721379 -34023519 - MLT1J LTR MaLR -14 497 26 244 359 0 0 chr13 85721619 85721697 -34023201 + MIR3 SINE MIR 124 201 -7 2265 178 11 25 chr13 85722887 85723326 -34021572 - Tigger2a DNA MER2_type -1 433 1 281 301 39 54 chr13 85723352 85723555 -34021343 - L1ME1 LINE L1 -76 6090 5891 27 0 0 0 chr13 85723682 85723709 -34021189 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 85724274 85724305 -34020593 + AT_rich Low_complexity Low_complexity 1 31 0 38 0 0 0 chr13 85724718 85724756 -34020142 + AT_rich Low_complexity Low_complexity 1 38 0 210 118 0 0 chr13 85725365 85725399 -34019499 + (TG)n Simple_repeat Simple_repeat 2 35 0 277 295 63 11 chr13 85726356 85726451 -34018447 - MER5A DNA MER1_type -80 109 10 198 103 0 0 chr13 85728098 85728127 -34016771 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 113 30 65 chr13 85728144 85728312 -34016586 + (TA)n Simple_repeat Simple_repeat 1 162 0 559 171 34 17 chr13 85728372 85728547 -34016351 + (TA)n Simple_repeat Simple_repeat 2 179 0 22 56 0 0 chr13 85728565 85728601 -34016297 + AT_rich Low_complexity Low_complexity 1 36 0 324 294 0 29 chr13 85728606 85728708 -34016190 + L1MC4 LINE L1 6604 6702 -1340 300 287 0 0 chr13 85728708 85728809 -34016089 + (CATA)n Simple_repeat Simple_repeat 1 101 0 * 624 224 25 0 chr13 85728786 85729033 -34015865 + (CATATA)n Simple_repeat Simple_repeat 1 253 0 236 322 0 0 chr13 85729033 85729123 -34015775 - L1MC4 LINE L1 -1339 6703 6614 361 340 101 5 chr13 85729552 85729740 -34015158 + HERVL LTR ERVL 3638 3843 -1811 24 0 0 0 chr13 85729932 85729956 -34014942 + AT_rich Low_complexity Low_complexity 1 24 0 265 333 53 18 chr13 85730539 85730653 -34014245 + L2 LINE L2 2966 3083 -230 21 71 0 0 chr13 85731650 85731692 -34013206 + AT_rich Low_complexity Low_complexity 1 42 0 966 243 123 78 chr13 85731769 85732113 -34012785 - MLT1D LTR MaLR -17 488 118 2343 47 0 20 chr13 85732113 85732414 -34012484 + AluY SINE Alu 1 295 -16 966 243 123 78 chr13 85732414 85732517 -34012381 - MLT1D LTR MaLR -387 118 21 292 43 43 0 chr13 85732541 85732587 -34012311 + (CA)n Simple_repeat Simple_repeat 2 49 0 262 306 0 24 chr13 85732701 85732786 -34012112 + CT-rich Low_complexity Low_complexity 2 84 0 2122 176 72 17 chr13 85733687 85734091 -34010807 - MSTB LTR MaLR 0 426 1 901 265 98 41 chr13 85734138 85734648 -34010250 + L1MC4 LINE L1 7275 7813 -229 27 0 0 0 chr13 85734971 85734998 -34009900 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr13 85735315 85735350 -34009548 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr13 85736760 85736784 -34008114 + AT_rich Low_complexity Low_complexity 1 24 0 2976 104 32 9 chr13 85737002 85737444 -34007454 - LTR8 LTR ERV1 0 691 240 304 338 58 59 chr13 85737444 85737809 -34007089 + L1MEc LINE L1 172 536 -5860 2201 119 58 0 chr13 85737809 85738153 -34006745 + THE1B LTR MaLR 1 364 0 304 338 58 59 chr13 85738153 85738634 -34006264 + L1MEc LINE L1 536 1017 -5379 665 237 57 0 chr13 85738646 85738840 -34006058 + L1MCa LINE L1 1 205 -6221 314 176 14 0 chr13 85738846 85738920 -34005978 + L1MA9 LINE L1 6217 6291 -21 704 280 133 5 chr13 85738937 85739224 -34005674 + L1MC/D LINE L1 5478 5801 -397 6939 166 30 17 chr13 85739262 85740514 -34004384 - Tigger1 DNA MER2_type -1149 1269 1 1555 151 81 7 chr13 85740607 85740878 -34004020 - AluSx SINE Alu -15 297 7 23 54 0 0 chr13 85740954 85740991 -34003907 + AT_rich Low_complexity Low_complexity 1 37 0 38 22 0 0 chr13 85741527 85741572 -34003326 + AT_rich Low_complexity Low_complexity 1 45 0 225 220 40 0 chr13 85743092 85743142 -34001756 - L1MD3 LINE L1 -1325 6670 6619 23 33 0 0 chr13 85743297 85743327 -34001571 + AT_rich Low_complexity Low_complexity 1 30 0 1674 154 0 34 chr13 85743963 85744278 -34000620 - AluJb SINE Alu 0 305 1 679 244 85 0 chr13 85744558 85744722 -34000176 + MER45A DNA AcHobo 1 178 0 23 0 0 0 chr13 85744782 85744805 -34000093 + AT_rich Low_complexity Low_complexity 1 23 0 234 62 0 0 chr13 85745792 85745824 -33999074 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 268 229 46 23 chr13 85745841 85746016 -33998882 + (TA)n Simple_repeat Simple_repeat 2 180 0 33 0 0 0 chr13 85746020 85746053 -33998845 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr13 85746485 85746513 -33998385 + AT_rich Low_complexity Low_complexity 1 28 0 290 309 108 50 chr13 85746735 85747078 -33997820 - Charlie8 DNA MER1_type -1300 1117 755 500 288 138 44 chr13 85747204 85747483 -33997415 + MLT1F LTR MaLR 145 467 -75 2049 137 18 3 chr13 85747483 85747811 -33997087 - MER1B DNA MER1_type -3 334 2 500 288 138 44 chr13 85747811 85747892 -33997006 + MLT1F LTR MaLR 467 539 -3 280 245 9 57 chr13 85747964 85748070 -33996828 + L1ME3A LINE L1 6069 6169 -1 23 33 0 0 chr13 85748073 85748103 -33996795 + AT_rich Low_complexity Low_complexity 1 30 0 1434 191 58 26 chr13 85749746 85750124 -33994774 + MLT1B LTR MaLR 1 390 0 372 223 0 43 chr13 85750695 85750789 -33994109 - L1MC4 LINE L1 -1338 6704 6615 34 55 0 0 chr13 85750828 85750883 -33994015 + AT_rich Low_complexity Low_complexity 1 55 0 641 281 42 107 chr13 85751175 85751699 -33993199 + MER110 LTR ERV1 2 491 0 2517 178 22 0 chr13 85752867 85753357 -33991541 - L1MA5 LINE L1 -2 6298 5798 359 348 71 5 chr13 85754969 85755153 -33989745 - MLT1I LTR MaLR -19 390 195 393 212 5 141 chr13 85755201 85755385 -33989513 - MER52A LTR ERV1 0 1755 1597 * 1056 282 125 51 chr13 85755381 85756125 -33988773 - MER52A LTR ERV1 -281 1474 1 1551 150 14 32 chr13 85756933 85757213 -33987685 - MER4D LTR ERV1 -4 868 594 1225 125 5 26 chr13 85757211 85757251 -33987647 - MER4D LTR ERV1 -682 190 151 * 3309 141 23 25 chr13 85757251 85757852 -33987046 - MER4A LTR ERV1 0 600 1 1225 125 5 26 chr13 85757852 85758003 -33986895 - MER4D LTR ERV1 -721 151 3 387 202 25 84 chr13 85758370 85758489 -33986409 - MIR SINE MIR -66 196 85 1697 230 162 39 chr13 85759262 85759998 -33984900 + LTR1B LTR ERV1 1 826 0 189 74 0 0 chr13 85760715 85760742 -33984156 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 27 49 0 0 chr13 85760890 85760931 -33983967 + AT_rich Low_complexity Low_complexity 1 41 0 564 222 90 108 chr13 85760997 85761452 -33983446 - LTR7 LTR ERV1 0 450 4 431 350 93 5 chr13 85761470 85761664 -33983234 - MIR SINE MIR 0 262 52 2147 109 0 7 chr13 85762371 85762675 -33982223 + AluSg SINE Alu 1 302 -8 184 299 104 62 chr13 85763582 85763726 -33981172 + MER5A DNA MER1_type 18 167 -22 * 191 273 121 61 chr13 85763598 85763730 -33981168 - MER5B DNA MER1_type -22 156 17 353 316 21 28 chr13 85764471 85764759 -33980139 + L1M4 LINE L1 4437 4722 -1424 1087 179 69 19 chr13 85764782 85764904 -33979994 + L1MA9 LINE L1 6038 6152 -160 255 103 0 0 chr13 85764904 85764943 -33979955 + (CA)n Simple_repeat Simple_repeat 2 40 0 1087 179 69 19 chr13 85764943 85765082 -33979816 + L1MA9 LINE L1 6152 6312 0 475 310 98 24 chr13 85765188 85765443 -33979455 + LTR16B LTR ERVL 190 463 -1 1610 211 126 70 chr13 85766195 85766782 -33978116 - MLT1E2 LTR MaLR 0 626 7 2179 81 3 50 chr13 85767189 85767374 -33977524 - AluSg SINE Alu -4 306 141 2612 30 3 0 chr13 85767374 85767676 -33977222 - AluY SINE Alu -6 305 3 2179 81 3 50 chr13 85767676 85767811 -33977087 - AluSg SINE Alu -169 141 1 711 229 113 14 chr13 85767912 85768205 -33976693 + MER33 DNA MER1_type 3 324 0 25 0 0 0 chr13 85768308 85768333 -33976565 + AT_rich Low_complexity Low_complexity 1 25 0 1895 143 0 11 chr13 85769163 85769449 -33975449 + AluSg SINE Alu 2 284 -26 847 0 0 0 chr13 85769458 85769554 -33975344 - L1PA2 LINE L1 -350 5805 5710 2901 24 0 0 chr13 85769554 85769889 -33975009 + L1PA2 LINE L1 5812 6150 -5 24 32 0 0 chr13 85769889 85769920 -33974978 + AT_rich Low_complexity Low_complexity 1 31 0 921 309 65 0 chr13 85770192 85770516 -33974382 + MER2 DNA MER2_type 1 345 0 28 71 0 0 chr13 85770859 85770915 -33973983 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr13 85771191 85771214 -33973684 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr13 85771446 85771475 -33973423 + AT_rich Low_complexity Low_complexity 1 29 0 364 252 0 106 chr13 85771490 85771613 -33973285 + MLT1J LTR MaLR 231 340 -171 35 78 0 0 chr13 85771897 85771974 -33972924 + AT_rich Low_complexity Low_complexity 1 77 0 301 148 16 0 chr13 85772748 85772809 -33972089 - MER57A LTR ERV1 0 403 342 2755 238 11 12 chr13 85772812 85773471 -33971427 - LTR23-int LTR ERV1 -2047 5490 4833 872 181 130 120 chr13 85773475 85773884 -33971014 - LTR23-int LTR ERV1 -3544 4576 4164 740 161 37 62 chr13 85773926 85774307 -33970591 - LTR23-int LTR ERV1 -2617 3714 1925 303 102 17 30 chr13 85774357 85774450 -33970448 - LTR23-int LTR ERV1 -2366 2888 2428 840 212 6 0 chr13 85774739 85774904 -33969994 - LTR23-int LTR ERV1 -2991 3340 3175 588 120 40 107 chr13 85774900 85775050 -33969848 - LTR23-int LTR ERV1 -3114 3217 3078 * 494 193 14 149 chr13 85775051 85775288 -33969610 - LTR23-int LTR ERV1 -3732 1391 1203 23 0 0 0 chr13 85775384 85775407 -33969491 + AT_rich Low_complexity Low_complexity 1 23 0 2249 140 17 6 chr13 85776195 85776553 -33968345 - THE1B LTR MaLR -2 362 1 9347 128 53 14 chr13 85776553 85778073 -33966825 - THE1B-int LTR MaLR 0 1580 1 2179 154 17 11 chr13 85778075 85778433 -33966465 - THE1B LTR MaLR -4 360 1 3591 236 90 43 chr13 85778537 85779825 -33965073 - L1MC3 LINE L1 -8 7777 6430 4060 217 48 6 chr13 85780041 85781009 -33963889 - L1 LINE L1 -1619 4527 3520 2436 235 78 24 chr13 85781568 85782194 -33962704 + L1PB1 LINE L1 504 1163 -5700 * 2606 221 10 7 chr13 85782188 85782782 -33962116 + L1PB1 LINE L1 3173 3768 -3094 * 5643 172 37 4 chr13 85782776 85784299 -33960599 + L1PB1 LINE L1 5284 6866 -1 2189 105 3 0 chr13 85784317 85784613 -33960285 + AluSp SINE Alu 1 297 -16 30 0 0 0 chr13 85784774 85784804 -33960094 + AT_rich Low_complexity Low_complexity 1 30 0 1515 177 42 53 chr13 85785046 85785425 -33959473 + THE1C LTR MaLR 1 375 0 331 311 41 28 chr13 85785430 85785748 -33959150 + L1MC4a LINE L1 3656 3977 -2169 23 68 0 0 chr13 85785750 85785794 -33959104 + AT_rich Low_complexity Low_complexity 1 44 0 483 300 109 6 chr13 85786098 85786411 -33958487 + L1MC4a LINE L1 5284 5628 -2180 576 228 23 23 chr13 85786474 85786645 -33958253 + L1MC4a LINE L1 5891 6061 -1747 438 278 80 16 chr13 85788254 85788441 -33956457 - L1MC4 LINE L1 -13 8029 7831 936 273 51 30 chr13 85788906 85789287 -33955611 - L1MC4 LINE L1 -889 6919 6569 747 17 51 8 chr13 85789287 85789404 -33955494 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 936 273 51 30 chr13 85789404 85789533 -33955365 - L1MC4 LINE L1 -1239 6569 6444 1251 173 74 26 chr13 85789810 85790081 -33954817 + AluJo SINE Alu 1 284 -28 207 0 0 0 chr13 85790081 85790104 -33954794 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr13 85790193 85790215 -33954683 + AT_rich Low_complexity Low_complexity 1 22 0 1674 116 25 4 chr13 85790216 85790491 -33954407 - L1MA1 LINE L1 -3 6299 6019 1964 143 7 0 chr13 85790572 85790872 -33954026 + AluJb SINE Alu 5 306 -6 2961 173 76 30 chr13 85791239 85791966 -33952932 - L1MA8 LINE L1 0 6291 5532 304 317 15 21 chr13 85792186 85792358 -33952540 - L1ME LINE L1 -387 5775 5605 25 65 0 0 chr13 85792456 85792502 -33952396 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr13 85793255 85793295 -33951603 + AT_rich Low_complexity Low_complexity 1 40 0 182 91 30 0 chr13 85793653 85793686 -33951212 + CT-rich Low_complexity Low_complexity 5 38 0 1376 258 121 23 chr13 85794160 85794672 -33950226 + L1MC4 LINE L1 6528 7089 -953 666 277 72 42 chr13 85794682 85794989 -33949909 + L1MC4 LINE L1 7255 7570 -472 999 174 47 54 chr13 85794999 85795257 -33949641 + L1MA9 LINE L1 6051 6306 -6 558 284 81 34 chr13 85795289 85795609 -33949289 + L1MC4 LINE L1 7565 7899 -143 216 0 0 0 chr13 85795762 85795786 -33949112 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr13 85796485 85796506 -33948392 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 85796822 85796859 -33948039 + AT_rich Low_complexity Low_complexity 1 37 0 1015 209 5 5 chr13 85796862 85797073 -33947825 - L1PB4 LINE L1 -14 6142 5932 1651 220 31 14 chr13 85797198 85797557 -33947341 + MLT1A1 LTR MaLR 1 365 0 28 29 0 0 chr13 85797787 85797822 -33947076 + AT_rich Low_complexity Low_complexity 1 35 0 298 132 0 0 chr13 85797844 85797897 -33947001 - LTR30 LTR ERV1 -118 604 552 802 232 28 51 chr13 85798941 85799210 -33945688 - MER31B LTR ERV1 -3 511 76 315 308 8 17 chr13 85799254 85799374 -33945524 + L1ME LINE L1 5605 5723 -447 206 351 0 0 chr13 85799396 85799470 -33945428 + CT-rich Low_complexity Low_complexity 3 76 0 423 0 0 0 chr13 85799541 85799588 -33945310 + (CA)n Simple_repeat Simple_repeat 2 48 0 894 209 11 22 chr13 85799596 85799778 -33945120 + MER31B LTR ERV1 1 180 -286 297 246 49 0 chr13 85801285 85801346 -33943552 - MER5A DNA MER1_type -18 171 108 1997 127 0 3 chr13 85801346 85801629 -33943269 - AluSx SINE Alu -14 298 17 309 26 0 0 chr13 85802518 85802556 -33942342 + (CA)n Simple_repeat Simple_repeat 1 38 0 292 262 33 0 chr13 85802561 85802622 -33942276 + MER21B LTR ERV1 34 96 -767 810 226 51 13 chr13 85802643 85802877 -33942021 - L1MA9 LINE L1 -131 6181 5939 1112 216 27 7 chr13 85802881 85803182 -33941716 - L1P LINE L1 -802 5344 5038 * 3579 228 52 7 chr13 85803168 85804081 -33940817 + L1P LINE L1 4056 5009 -1137 1175 243 8 19 chr13 85804093 85804352 -33940546 + MER21B LTR ERV1 103 358 -505 261 87 39 58 chr13 85804380 85804483 -33940415 + (CACAC)n Simple_repeat Simple_repeat 5 105 0 1151 224 59 72 chr13 85804521 85804765 -33940133 + MER21B LTR ERV1 369 608 -255 2448 98 27 8 chr13 85804765 85805133 -33939765 - THE1C LTR MaLR 0 375 1 1151 224 59 72 chr13 85805133 85805276 -33939622 + MER21B LTR ERV1 608 751 -112 26 50 0 0 chr13 85805656 85805696 -33939202 + AT_rich Low_complexity Low_complexity 1 40 0 256 250 0 18 chr13 85805962 85806018 -33938880 - MLT1D LTR MaLR -191 314 260 5780 78 2 3 chr13 85806018 85807379 -33937519 - L1PA7 LINE L1 0 6154 4760 4361 106 3 3 chr13 85807378 85808017 -33936881 + L1PA7 LINE L1 4091 4729 -1417 325 265 73 44 chr13 85808193 85808329 -33936569 - MLT1D LTR MaLR -362 143 4 28 0 0 0 chr13 85808863 85808891 -33936007 + AT_rich Low_complexity Low_complexity 1 28 0 195 313 0 30 chr13 85809263 85809330 -33935568 + L2 LINE L2 3246 3310 -3 401 264 92 54 chr13 85810437 85810643 -33934255 - LTR40b LTR ERVL -5 457 267 31 26 0 0 chr13 85810833 85810871 -33934027 + AT_rich Low_complexity Low_complexity 1 38 0 233 374 39 16 chr13 85812553 85812735 -33932163 + MIR SINE MIR 64 249 -13 22 0 0 0 chr13 85812928 85812950 -33931948 + AT_rich Low_complexity Low_complexity 1 22 0 229 261 72 85 chr13 85813951 85814104 -33930794 + MLT1H1-int LTR MaLR 1107 1257 -114 822 262 96 71 chr13 85814200 85814639 -33930259 + MLT1H1 LTR MaLR 1 450 -105 1456 227 42 28 chr13 85815088 85815516 -33929382 - MLT1C LTR MaLR 0 467 34 1461 166 123 26 chr13 85815527 85815877 -33929021 - MLT1-int LTR MaLR -984 387 4 459 0 0 0 chr13 85815907 85815958 -33928940 + (TG)n Simple_repeat Simple_repeat 2 52 0 980 211 54 9 chr13 85816057 85816280 -33928618 + MLT2C1 LTR ERVL 124 356 -41 2016 116 26 10 chr13 85816314 85816616 -33928282 - AluSc SINE Alu -2 307 1 750 138 0 0 chr13 85816616 85816732 -33928166 - MLT2C2 LTR ERVL -344 120 5 25 0 0 0 chr13 85817772 85817797 -33927101 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr13 85817888 85817919 -33926979 + AT_rich Low_complexity Low_complexity 1 31 0 498 290 42 37 chr13 85820256 85820470 -33924428 - MER54A LTR ERVL -311 590 376 182 372 83 8 chr13 85822556 85822677 -33922221 + L3 LINE CR1 1428 1557 -20 332 333 84 21 chr13 85823731 85823968 -33920930 - MIR SINE MIR 0 262 11 890 224 228 11 chr13 85824038 85824310 -33920588 - L1MC3 LINE L1 -934 7269 6939 3576 248 35 16 chr13 85824316 85825844 -33919054 - L1MC3 LINE L1 -754 5810 5155 734 277 22 89 chr13 85825830 85825963 -33918935 - L1MC3 LINE L1 -1775 4789 4649 * 489 17 0 0 chr13 85825963 85826021 -33918877 + (GA)n Simple_repeat Simple_repeat 2 59 0 734 277 22 89 chr13 85826021 85826248 -33918650 - L1MC3 LINE L1 -1915 4649 4453 514 332 16 21 chr13 85826309 85826499 -33918399 - MLT1A2 LTR MaLR -185 189 1 3477 84 12 12 chr13 85826522 85827022 -33917876 - L1PA13 LINE L1 0 6163 5664 498 302 72 26 chr13 85827038 85827303 -33917595 - L1MC3 LINE L1 -3393 3171 2895 1238 267 84 72 chr13 85827307 85828792 -33916106 - L1MC3 LINE L1 -3888 2857 1156 * 3617 176 15 86 chr13 85828772 85829690 -33915208 - L1MA10 LINE L1 -2 6332 5480 2221 242 33 13 chr13 85829680 85830279 -33914619 - L1MC3 LINE L1 -4898 1147 537 * 897 296 49 62 chr13 85830281 85830734 -33914164 - L1MC3 LINE L1 -5598 447 1 208 150 0 25 chr13 85833793 85833833 -33911065 + (CA)n Simple_repeat Simple_repeat 2 40 0 192 388 61 7 chr13 85833880 85834027 -33910871 - MIR SINE MIR -58 204 50 303 350 78 6 chr13 85834227 85834407 -33910491 + MIR SINE MIR 65 257 -5 11996 227 38 18 chr13 85834417 85834444 -33910454 - L1M3 LINE L1 -675 6931 6906 3363 160 82 3 chr13 85834444 85835074 -33909824 - L1PA16 LINE L1 -11 6155 5476 1093 51 0 0 chr13 85835074 85835207 -33909691 - L1PA5 LINE L1 -1 6153 6016 11996 227 38 18 chr13 85835207 85838257 -33906641 - L1M3 LINE L1 -700 6906 3740 2316 94 0 7 chr13 85838257 85838565 -33906333 - AluY SINE Alu -3 308 3 11996 227 38 18 chr13 85838565 85840122 -33904776 - L1M3 LINE L1 -3866 3740 2215 273 330 21 0 chr13 85840338 85840435 -33904463 - L1PA12 LINE L1 -5398 2183 2085 795 356 42 28 chr13 85840581 85841159 -33903739 - L1PA12 LINE L1 -6200 1374 789 24 77 0 0 chr13 85841173 85841225 -33903673 + AT_rich Low_complexity Low_complexity 1 52 0 2626 41 0 0 chr13 85841545 85841864 -33903034 - L1PA2 LINE L1 -1059 5087 4769 7741 14 5 0 chr13 85841864 85842990 -33901908 + L1PA2 LINE L1 5088 6217 0 197 239 113 28 chr13 85843069 85843140 -33901758 - MIR3 SINE MIR -24 184 108 191 313 94 50 chr13 85843154 85843314 -33901584 - L2 LINE L2 0 3313 3147 1181 176 12 16 chr13 85843481 85843731 -33901167 - L1MA8 LINE L1 -4 6287 6039 1215 298 59 43 chr13 85843992 85844673 -33900225 + L1M4 LINE L1 14 705 -5837 234 0 0 0 chr13 85844872 85844898 -33900000 + (TG)n Simple_repeat Simple_repeat 2 27 0 1858 187 87 22 chr13 85846266 85846668 -33898230 - MSTA LTR MaLR 0 428 1 577 286 112 87 chr13 85847149 85847642 -33897256 + MLT1D LTR MaLR 1 505 0 211 325 193 24 chr13 85847652 85847864 -33897034 - MIR SINE MIR -14 248 1 255 189 0 0 chr13 85848612 85848665 -33896233 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr13 85848847 85848868 -33896030 + AT_rich Low_complexity Low_complexity 1 21 0 218 250 18 0 chr13 85849959 85850015 -33894883 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 24 77 0 0 chr13 85850799 85850851 -33894047 + AT_rich Low_complexity Low_complexity 1 52 0 344 222 42 0 chr13 85851017 85851089 -33893809 - MER3 DNA MER1_type 0 209 135 522 181 66 44 chr13 85851636 85851818 -33893080 - MER53 DNA DNA 0 189 4 226 209 33 44 chr13 85852797 85852888 -33892010 - L1MC4 LINE L1 -1339 6703 6614 268 159 18 26 chr13 85852892 85853005 -33891893 + (TA)n Simple_repeat Simple_repeat 1 112 0 360 281 112 56 chr13 85853192 85853224 -33891674 - MIR SINE MIR -71 191 162 369 0 0 0 chr13 85853224 85853265 -33891633 + (TTA)n Simple_repeat Simple_repeat 1 41 0 360 281 112 56 chr13 85853265 85853410 -33891488 - MIR SINE MIR -100 162 4 272 403 67 0 chr13 85853968 85854117 -33890781 + L2 LINE L2 2904 3062 -210 293 281 132 58 chr13 85854964 85855259 -33889639 + L1M4 LINE L1 959 1275 -5359 313 385 47 5 chr13 85855386 85855599 -33889299 + L1M4 LINE L1 1413 1634 -5000 498 46 0 0 chr13 85855720 85855785 -33889113 + (TG)n Simple_repeat Simple_repeat 2 66 0 22 80 0 0 chr13 85856087 85856137 -33888761 + AT_rich Low_complexity Low_complexity 1 50 0 5312 253 39 78 chr13 85856187 85859054 -33885844 + L1PB4 LINE L1 1 1940 -4909 207 0 0 0 chr13 85859054 85859077 -33885821 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5312 253 39 78 chr13 85859077 85859552 -33885346 + L1PB4 LINE L1 1940 2432 -4417 8785 216 34 48 chr13 85859585 85859849 -33885049 + L1PB4 LINE L1 3267 3533 -3326 2885 9 0 0 chr13 85859849 85860166 -33884732 + AluYb8 SINE Alu 1 317 -1 8785 216 34 48 chr13 85860166 85860995 -33883903 + L1PB4 LINE L1 3533 4372 -2487 343 109 40 19 chr13 85860995 85861070 -33883828 + MSTA LTR MaLR 1 83 -292 8785 216 34 48 chr13 85861070 85861103 -33883795 + L1PB4 LINE L1 4372 4404 -2455 284 178 3 0 chr13 85861103 85861158 -33883740 + MSTA LTR MaLR 300 428 0 8785 216 34 48 chr13 85861158 85863256 -33881642 + L1PB4 LINE L1 4404 6568 -291 314 156 0 39 chr13 85863244 85863333 -33881565 + L1PB4 LINE L1 6772 6853 -16 * 198 0 0 0 chr13 85864940 85864962 -33879936 + (T)n Simple_repeat Simple_repeat 1 22 0 194 128 26 0 chr13 85865050 85865089 -33879809 + (TAA)n Simple_repeat Simple_repeat 1 40 0 315 329 76 0 chr13 85865094 85865252 -33879646 - MIR SINE MIR -56 206 37 198 301 0 97 chr13 85865879 85865982 -33878916 - MER5B DNA MER1_type -84 94 2 1091 185 24 31 chr13 85866356 85866607 -33878291 - L1MD3 LINE L1 -3 7992 6081 551 207 9 9 chr13 85866609 85866725 -33878173 - L1MC1 LINE L1 -214 6119 6004 1363 147 13 13 chr13 85866727 85866952 -33877946 + THE1C LTR MaLR 1 225 -150 2109 118 69 9 chr13 85866985 85867333 -33877565 + LTR4 LTR ERV1 221 589 -7 896 173 7 0 chr13 85867339 85867489 -33877409 + THE1C LTR MaLR 225 375 0 5774 146 49 4 chr13 85867489 85868423 -33876475 + THE1C-int LTR MaLR 1 976 -604 1470 212 7 17 chr13 85868422 85868724 -33876174 - L1MCa LINE L1 -6120 306 8 * 23 0 0 0 chr13 85868996 85869019 -33875879 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 85869154 85869184 -33875714 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 85869340 85869361 -33875537 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr13 85869483 85869525 -33875373 + (TA)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr13 85869590 85869618 -33875280 + AT_rich Low_complexity Low_complexity 1 28 0 207 89 54 36 chr13 85869789 85869845 -33875053 + T-rich Low_complexity Low_complexity 1 57 0 3186 132 11 8 chr13 85869845 85870369 -33874529 - L1MA1 LINE L1 0 6302 5777 4427 219 30 20 chr13 85870397 85871390 -33873508 - L1M1 LINE L1 -6540 1025 23 23 0 0 0 chr13 85871700 85871723 -33873175 + AT_rich Low_complexity Low_complexity 1 23 0 195 227 0 0 chr13 85871980 85872046 -33872852 + (TA)n Simple_repeat Simple_repeat 2 67 0 203 133 0 0 chr13 85873135 85873165 -33871733 + (CA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr13 85873840 85873864 -33871034 + AT_rich Low_complexity Low_complexity 1 24 0 1228 245 29 34 chr13 85874621 85875004 -33869894 - MER39 LTR ERV1 -66 641 261 21 0 0 0 chr13 85876107 85876128 -33868770 + AT_rich Low_complexity Low_complexity 1 21 0 2897 136 37 160 chr13 85877067 85877878 -33867020 - MER50 LTR ERV1 -23 711 1 23 0 0 0 chr13 85877996 85878019 -33866879 + AT_rich Low_complexity Low_complexity 1 23 0 224 338 0 0 chr13 85878529 85878603 -33866295 + GA-rich Low_complexity Low_complexity 2 75 0 2034 122 10 0 chr13 85879123 85879417 -33865481 - AluSq SINE Alu -16 297 1 28 48 0 0 chr13 85879899 85879941 -33864957 + AT_rich Low_complexity Low_complexity 1 42 0 13560 177 34 27 chr13 85880683 85881953 -33862945 - Tigger2 DNA MER2_type -5 2713 1453 180 0 0 0 chr13 85881953 85881973 -33862925 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 13560 177 34 27 chr13 85881973 85882634 -33862264 - Tigger2 DNA MER2_type -1265 1453 798 6492 65 42 0 chr13 85882634 85883291 -33861607 - L1PA7 LINE L1 -5 6149 5470 1998 113 3 33 chr13 85883291 85883593 -33861305 - AluSg SINE Alu -13 297 5 6492 65 42 0 chr13 85883593 85883921 -33860977 - L1PA7 LINE L1 -684 5470 5157 13560 177 34 27 chr13 85883921 85884684 -33860214 - Tigger2 DNA MER2_type -1920 798 1 191 319 62 50 chr13 85885128 85885288 -33859610 - MER5A DNA MER1_type -20 169 8 385 274 103 27 chr13 85885366 85885512 -33859386 + MIR SINE MIR 106 262 0 730 172 0 16 chr13 85885610 85885738 -33859160 + FLAM_A SINE Alu 11 136 -6 233 203 47 0 chr13 85886120 85886184 -33858714 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 24 32 0 0 chr13 85886443 85886474 -33858424 + AT_rich Low_complexity Low_complexity 1 31 0 3319 70 146 149 chr13 85887915 85888605 -33856293 + LTR12 LTR ERV1 1 688 0 272 143 18 0 chr13 85889031 85889087 -33855811 + (TG)n Simple_repeat Simple_repeat 2 58 0 533 287 58 15 chr13 85889194 85889573 -33855325 - MER110 LTR ERV1 -20 471 22 259 279 0 0 chr13 85889553 85889614 -33855284 - MER110 LTR ERV1 -409 82 22 * 1143 284 67 34 chr13 85890005 85890453 -33854445 + MLT1F1 LTR MaLR 89 551 -16 486 335 98 5 chr13 85890797 85891224 -33853674 - L1ME3A LINE L1 -213 5957 5491 506 366 98 8 chr13 85891378 85891744 -33853154 - MLT1G1 LTR MaLR -188 407 9 204 40 0 0 chr13 85891755 85891780 -33853118 + (TTG)n Simple_repeat Simple_repeat 3 27 0 877 217 0 0 chr13 85892232 85892393 -33852505 + FRAM SINE Alu 2 162 -4 602 284 49 16 chr13 85892649 85892881 -33852017 + L1ME3A LINE L1 5487 5724 -446 3074 233 59 40 chr13 85892892 85893721 -33851177 - MER21B LTR ERV1 0 863 19 330 244 13 13 chr13 85893819 85893897 -33851001 - MER21B LTR ERV1 -773 90 13 508 297 122 0 chr13 85893911 85894140 -33850758 + L1ME3A LINE L1 5721 5977 -193 1089 230 24 56 chr13 85894167 85894461 -33850437 + MLT1A1 LTR MaLR 6 289 -76 2213 120 0 0 chr13 85894461 85894760 -33850138 - AluSg SINE Alu -11 299 1 1089 230 24 56 chr13 85894760 85894804 -33850094 + MLT1A1 LTR MaLR 289 333 -32 2904 200 32 12 chr13 85894947 85895098 -33849800 + ERVL-B3 LTR ERVL 3323 3470 -2294 180 0 0 0 chr13 85895098 85895118 -33849780 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2904 200 32 12 chr13 85895118 85895928 -33848970 + ERVL-B3 LTR ERVL 3470 4379 -1385 1892 179 62 34 chr13 85895929 85896458 -33848440 + MLT2A2 LTR ERVL 2 554 0 5467 194 25 34 chr13 85896458 85897161 -33847737 + ERVL-B3 LTR ERVL 4375 5064 -700 1821 181 19 68 chr13 85897161 85897576 -33847322 + MSTD LTR MaLR 2 396 0 5467 194 25 34 chr13 85897576 85898036 -33846862 + ERVL-B3 LTR ERVL 5064 5527 -237 6453 168 32 5 chr13 85898049 85898310 -33846588 - Tigger3b DNA MER2_type -1809 1219 966 3156 156 51 17 chr13 85898310 85898900 -33845998 - MER4B LTR ERV1 0 610 1 6453 168 32 5 chr13 85898900 85899483 -33845415 - Tigger3b DNA MER2_type -2062 966 331 2351 149 15 0 chr13 85899483 85899880 -33845018 - MER57A LTR ERV1 0 403 1 6453 168 32 5 chr13 85899880 85900221 -33844677 - Tigger3b DNA MER2_type -2697 331 1 22 35 0 0 chr13 85900285 85900314 -33844584 + AT_rich Low_complexity Low_complexity 1 29 0 32 67 0 0 chr13 85900481 85900541 -33844357 + AT_rich Low_complexity Low_complexity 1 60 0 3517 185 18 17 chr13 85900684 85900879 -33844019 - MER67C LTR ERV1 0 710 517 848 268 44 101 chr13 85900879 85901466 -33843432 + MLT2B3 LTR ERVL 1 554 0 3517 185 18 17 chr13 85901466 85901979 -33842919 - MER67C LTR ERV1 -193 517 1 306 87 0 0 chr13 85902677 85902723 -33842175 + (TAGTG)n Simple_repeat Simple_repeat 5 50 0 2073 164 136 24 chr13 85902884 85903419 -33841479 - LTR49 LTR ERV1 0 595 1 283 122 0 0 chr13 85903635 85903676 -33841222 + MER101B LTR ERV1 1 41 -529 1322 170 180 7 chr13 85903680 85903963 -33840935 - MSTA LTR MaLR 0 428 97 2586 194 20 4 chr13 85903965 85904461 -33840437 + L1P3 LINE L1 5 508 -5367 19665 188 14 17 chr13 85904461 85907700 -33837198 + L1P3 LINE L1 771 4011 -2450 432 0 0 0 chr13 85907700 85907748 -33837150 + (CA)n Simple_repeat Simple_repeat 2 49 0 19665 188 14 17 chr13 85907748 85908736 -33836162 + L1P3 LINE L1 4011 5001 -1460 1080 198 283 16 chr13 85908849 85909163 -33835735 + THE1B-int LTR MaLR 1249 1646 -5 1113 167 0 0 chr13 85909170 85909338 -33835560 + THE1B LTR MaLR 3 170 -194 1156 149 23 37 chr13 85909572 85909786 -33835112 + THE1B LTR MaLR 154 364 0 1631 268 26 20 chr13 85909787 85910239 -33834659 + LTR26 LTR ERV1 149 603 0 326 229 90 49 chr13 85910257 85910401 -33834497 + MER101B LTR ERV1 147 296 -274 3713 138 50 0 chr13 85911375 85911997 -33832901 + MER39B LTR ERV1 1 653 0 234 257 43 0 chr13 85913096 85913166 -33831732 + MSTB2 LTR MaLR 385 457 0 5778 211 16 7 chr13 85914636 85915926 -33828972 - L1 LINE L1 -1071 5075 3775 24 0 0 0 chr13 85916026 85916050 -33828848 + AT_rich Low_complexity Low_complexity 1 24 0 2193 55 44 0 chr13 85916050 85916322 -33828576 - AluY SINE Alu -27 284 1 25 0 0 0 chr13 85917318 85917343 -33827555 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 85918755 85918783 -33826115 + AT_rich Low_complexity Low_complexity 1 28 0 191 292 186 9 chr13 85919139 85919252 -33825646 - MIR3 SINE MIR -9 199 67 386 204 19 10 chr13 85919685 85919788 -33825110 - LTR37A LTR ERV1 -34 392 289 404 289 35 0 chr13 85920010 85920124 -33824774 - LTR40b LTR ERVL -222 240 123 2912 156 25 27 chr13 85920233 85920758 -33824140 + MER1A DNA MER1_type 4 527 0 372 264 50 44 chr13 85924209 85924368 -33820530 + MIR SINE MIR 103 262 0 288 387 116 11 chr13 85924368 85924740 -33820158 + L2 LINE L2 2104 2514 -800 228 380 8 16 chr13 85925101 85925230 -33819668 + MLT1G LTR MaLR 35 162 -428 324 261 9 9 chr13 85925249 85925364 -33819534 + CT-rich Low_complexity Low_complexity 2 116 0 303 232 172 93 chr13 85925368 85925519 -33819379 + MLT1G LTR MaLR 224 386 -209 319 200 100 0 chr13 85925527 85925617 -33819281 + MLT1G LTR MaLR 492 590 0 283 357 14 21 chr13 85925883 85926023 -33818875 + L2 LINE L2 3175 3313 0 21 36 0 0 chr13 85926041 85926069 -33818829 + AT_rich Low_complexity Low_complexity 1 28 0 3773 192 94 47 chr13 85926518 85927393 -33817505 - LTR28 LTR ERV1 -104 916 1 184 371 41 54 chr13 85927444 85927759 -33817139 + L2 LINE L2 2334 2644 -670 432 231 35 28 chr13 85928065 85928208 -33816690 + L1MA9 LINE L1 6073 6216 -96 591 167 44 26 chr13 85928208 85928322 -33816576 - AluJo SINE Alu -14 298 183 735 208 0 0 chr13 85928322 85928452 -33816446 - AluJo SINE Alu -170 132 3 252 261 0 0 chr13 85928454 85928523 -33816375 + L1MA9 LINE L1 6205 6273 -39 365 82 0 0 chr13 85928819 85928868 -33816030 + MADE1 DNA Mariner 5 53 -27 828 246 118 28 chr13 85929171 85929459 -33815439 + MER2 DNA MER2_type 9 322 -23 298 324 52 12 chr13 85929503 85929676 -33815222 + L1MC/D LINE L1 2727 2906 -3240 201 294 0 22 chr13 85929691 85929783 -33815115 + A-rich Low_complexity Low_complexity 3 92 0 21 0 0 0 chr13 85929879 85929900 -33814998 + AT_rich Low_complexity Low_complexity 1 21 0 979 233 45 16 chr13 85931030 85931439 -33813459 + MER65C LTR ERV1 1 461 0 24 0 0 0 chr13 85932921 85932945 -33811953 + AT_rich Low_complexity Low_complexity 1 24 0 2320 71 0 3 chr13 85933139 85933434 -33811464 - AluY SINE Alu -17 294 1 303 294 69 0 chr13 85935062 85935164 -33809734 - HERV16 LTR ERVL -3060 1936 1828 207 0 0 0 chr13 85935258 85935281 -33809617 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 398 412 13 16 chr13 85935308 85935616 -33809282 - HERV16 LTR ERVL -3420 1576 1270 758 352 41 16 chr13 85935772 85936261 -33808637 - HERV16 LTR ERVL -4472 524 24 630 351 71 12 chr13 85936291 85936613 -33808285 - LTR16A LTR ERVL -13 437 97 244 272 88 18 chr13 85936752 85936866 -33808032 + L1MC/D LINE L1 4582 4703 -1443 477 341 45 58 chr13 85936881 85937368 -33807530 + L1MC/D LINE L1 4693 5173 -973 401 244 61 16 chr13 85937369 85937531 -33807367 - MER4A LTR ERV1 -9 588 295 1926 181 45 45 chr13 85937531 85937705 -33807193 - MSTA LTR MaLR 0 428 255 1352 207 73 25 chr13 85937705 85938063 -33806835 + THE1C LTR MaLR 1 375 0 8795 150 17 35 chr13 85938065 85939673 -33805225 + THE1C-int LTR MaLR 3 1580 0 1584 150 69 39 chr13 85939675 85940035 -33804863 + THE1C LTR MaLR 5 375 0 1926 181 45 45 chr13 85940035 85940280 -33804618 - MSTA LTR MaLR -174 254 3 8278 198 31 1 chr13 85940286 85941884 -33803014 - MSTA-int LTR MaLR -4 1647 2 2281 185 41 0 chr13 85941885 85942296 -33802602 - MSTA LTR MaLR 0 428 1 1670 157 58 53 chr13 85942335 85942798 -33802100 - MER4A LTR ERV1 -239 425 1 314 270 52 17 chr13 85943007 85943122 -33801776 + L1ME3A LINE L1 6044 6162 -8 1513 160 98 25 chr13 85943310 85943920 -33800978 + L1PBa LINE L1 807 1606 -5257 497 255 56 56 chr13 85943924 85944024 -33800874 + L1ME2 LINE L1 5638 5737 -427 1921 149 7 13 chr13 85944024 85944333 -33800565 + AluSx SINE Alu 1 307 -5 497 255 56 56 chr13 85944333 85944499 -33800399 + L1ME2 LINE L1 5736 5904 -260 23 0 0 0 chr13 85944527 85944550 -33800348 + AT_rich Low_complexity Low_complexity 1 23 0 330 291 51 29 chr13 85944804 85944979 -33799919 + L1MC/D LINE L1 5348 5526 -2282 666 164 9 159 chr13 85944984 85945210 -33799688 + L1P LINE L1 4874 5065 -1081 26 30 0 0 chr13 85945303 85945336 -33799562 + AT_rich Low_complexity Low_complexity 1 33 0 462 30 0 0 chr13 85945397 85945464 -33799434 + AluSp/q SINE Alu 240 306 -7 225 329 0 0 chr13 85945539 85945621 -33799277 + L1M4 LINE L1 5190 5271 -875 23 0 0 0 chr13 85945646 85945669 -33799229 + AT_rich Low_complexity Low_complexity 1 23 0 36 40 0 0 chr13 85945965 85946015 -33798883 + AT_rich Low_complexity Low_complexity 1 50 0 306 135 58 10 chr13 85946056 85946160 -33798738 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 333 353 98 10 chr13 85946680 85946884 -33798014 - MIR SINE MIR 0 262 41 1762 105 71 14 chr13 85950074 85950369 -33794529 + AluSx SINE Alu 1 312 0 189 74 0 0 chr13 85950853 85950880 -33794018 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 720 193 41 7 chr13 85950902 85951047 -33793851 - FRAM SINE Alu -27 149 1 22 0 0 0 chr13 85951395 85951417 -33793481 + AT_rich Low_complexity Low_complexity 1 22 0 26 82 0 0 chr13 85951478 85951539 -33793359 + AT_rich Low_complexity Low_complexity 1 61 0 875 294 37 46 chr13 85951725 85952370 -33792528 - L1ME2 LINE L1 -172 5926 5291 1164 142 5 28 chr13 85952449 85952660 -33792238 - L1MA5A LINE L1 -4 6293 6088 836 175 62 76 chr13 85952665 85952876 -33792022 + L1M2 LINE L1 5421 5628 -669 1376 271 93 16 chr13 85952974 85953713 -33791185 - L1ME2 LINE L1 -817 5263 4468 368 217 131 63 chr13 85953782 85954003 -33790895 - L1ME2 LINE L1 -1711 4369 4134 1573 278 119 34 chr13 85954003 85954108 -33790790 - L1ME2 LINE L1 -2394 3686 3591 721 107 0 27 chr13 85954108 85954216 -33790682 + L1PA8A LINE L1 6021 6129 -2 1573 278 119 34 chr13 85954216 85955526 -33789372 - L1ME2 LINE L1 -2489 3591 2150 229 306 83 9 chr13 85955621 85955729 -33789169 - L1ME2 LINE L1 -5942 128 13 27 73 0 0 chr13 85955864 85955919 -33788979 + AT_rich Low_complexity Low_complexity 1 55 0 1284 216 122 12 chr13 85956185 85956588 -33788310 - LTR2 LTR ERV1 0 449 3 1838 240 44 42 chr13 85956604 85957217 -33787681 + L1MB7 LINE L1 5558 6171 -13 1231 221 112 45 chr13 85957348 85957578 -33787320 - LTR2 LTR ERV1 0 449 236 210 71 0 0 chr13 85957578 85957606 -33787292 + (CAGAA)n Simple_repeat Simple_repeat 1 28 0 1231 221 112 45 chr13 85957606 85957796 -33787102 - LTR2 LTR ERV1 -213 236 1 425 240 0 29 chr13 85959000 85959104 -33785794 - MER58B DNA MER1_type -2 339 239 886 260 61 73 chr13 85959104 85959665 -33785233 - MER39 LTR ERV1 0 707 5 21 0 0 0 chr13 85960382 85960403 -33784495 + AT_rich Low_complexity Low_complexity 1 21 0 304 216 11 23 chr13 85960872 85960960 -33783938 - Charlie5 DNA MER1_type -28 2584 2498 595 127 79 0 chr13 85961011 85961137 -33783761 + Charlie5 DNA MER1_type 2353 2488 -124 312 290 0 0 chr13 85961161 85961230 -33783668 - Charlie5 DNA MER1_type -2543 69 1 1401 189 21 25 chr13 85961512 85961797 -33783101 + MLT2D LTR ERVL 1 284 -130 305 128 21 0 chr13 85961811 85961858 -33783040 + MLT2D LTR ERVL 417 464 0 1298 202 46 139 chr13 85962444 85962653 -33782245 - MER67D LTR ERV1 0 514 287 2046 122 70 12 chr13 85962653 85962997 -33781901 + THE1B LTR MaLR 1 364 0 1298 202 46 139 chr13 85962997 85963332 -33781566 - MER67D LTR ERV1 -227 287 21 2325 316 68 25 chr13 85963417 85964545 -33780353 - HERVL LTR ERVL -990 4774 3598 795 306 17 9 chr13 85964703 85965005 -33779893 - HERVL LTR ERVL -2369 3395 3044 248 248 54 108 chr13 85965224 85965353 -33779545 - LTR35 LTR ERV1 0 618 497 200 114 68 0 chr13 85965353 85965397 -33779501 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 311 242 11 21 chr13 85965510 85965605 -33779293 - LTR58 LTR ERV1 -236 443 350 559 292 62 9 chr13 85965878 85966104 -33778794 - HERVL LTR ERVL -2932 2832 2595 207 0 0 0 chr13 85966136 85966159 -33778739 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 546 207 37 2 chr13 85966802 85967044 -33777854 + AluJo SINE Alu 3 302 0 299 301 24 0 chr13 85967628 85967711 -33777187 - L2 LINE L2 -4 3268 3184 2090 116 51 28 chr13 85968945 85969299 -33775599 - THE1B LTR MaLR 0 364 3 2908 280 46 25 chr13 85969760 85970204 -33774694 - L1MEc LINE L1 -2742 3473 3040 2079 120 0 32 chr13 85970204 85970513 -33774385 - AluSx SINE Alu -13 299 1 2908 280 46 25 chr13 85970513 85971828 -33773070 - L1MEc LINE L1 -3175 3040 1713 433 243 22 72 chr13 85971828 85972009 -33772889 - MLT1D LTR MaLR -194 311 140 1423 173 23 69 chr13 85973043 85973349 -33771549 + AluJo SINE Alu 1 292 -20 207 0 0 0 chr13 85973363 85973386 -33771512 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 766 177 0 0 chr13 85973408 85973532 -33771366 + FLAM_C SINE Alu 1 124 -19 22 35 0 0 chr13 85973542 85973571 -33771327 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 85974581 85974609 -33770289 + AT_rich Low_complexity Low_complexity 1 28 0 186 287 28 74 chr13 85975305 85975413 -33769485 + MIR SINE MIR 96 198 -64 1606 262 117 36 chr13 85975508 85977176 -33767722 + L1ME2 LINE L1 4359 6154 -10 768 180 99 6 chr13 85977405 85977566 -33767332 + AluSp SINE Alu 138 313 0 902 124 0 32 chr13 85977581 85977766 -33767132 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 205 138 0 0 chr13 85977769 85977798 -33767100 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 810 174 13 8 chr13 85977803 85978044 -33766854 + GA-rich Low_complexity Low_complexity 1 242 0 788 110 0 8 chr13 85978189 85978316 -33766582 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 660 104 0 0 chr13 85978546 85978642 -33766256 + AluSp/q SINE Alu 213 308 -5 314 324 48 14 chr13 85978673 85978818 -33766080 + HERVL LTR ERVL 4152 4301 -1353 679 238 45 26 chr13 85980299 85980564 -33764334 - L1M4 LINE L1 -856 5290 5021 * 1770 254 27 12 chr13 85980561 85981077 -33763821 - L1M4 LINE L1 -2012 4134 3611 193 339 221 4 chr13 85981218 85981498 -33763400 - L2 LINE L2 -1071 2243 1903 192 40 0 0 chr13 85982003 85982028 -33762870 + (CAT)n Simple_repeat Simple_repeat 1 25 0 941 164 57 68 chr13 85982433 85982587 -33762311 - L1MA8 LINE L1 -6 6285 6134 1969 140 7 16 chr13 85982587 85982895 -33762003 - AluSx SINE Alu -3 309 5 941 164 57 68 chr13 85982895 85983003 -33761895 - L1MA8 LINE L1 -157 6134 6026 430 167 0 120 chr13 85983116 85983224 -33761674 - MER82 DNA MER2_type -557 96 2 335 269 8 25 chr13 85983392 85983511 -33761387 + L1MA10 LINE L1 6166 6282 -52 247 284 84 32 chr13 85984735 85984890 -33760008 + MLT1L LTR MaLR 417 579 -36 25 65 0 0 chr13 85985818 85985864 -33759034 + AT_rich Low_complexity Low_complexity 1 46 0 203 175 0 25 chr13 85986290 85986330 -33758568 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr13 85986819 85986850 -33758048 + AT_rich Low_complexity Low_complexity 1 31 0 1906 102 0 7 chr13 85987439 85987713 -33757185 - L1PA5 LINE L1 0 6154 5883 5007 50 0 4 chr13 85987713 85988644 -33756254 - L1P2 LINE L1 -491 5663 4735 192 431 26 9 chr13 85988835 85988951 -33755947 + L2 LINE L2 1147 1264 -2050 326 61 20 0 chr13 85989125 85989174 -33755724 + (TA)n Simple_repeat Simple_repeat 1 50 0 246 62 0 0 chr13 85989260 85989292 -33755606 + (CA)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chr13 85989632 85989655 -33755243 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1231 112 0 6 chr13 85990174 85990353 -33754545 - L1MA8 LINE L1 -310 5981 5804 * 1236 208 55 3 chr13 85990349 85990657 -33754241 + L1MA8 LINE L1 5967 6290 -1 569 63 13 0 chr13 85990842 85990921 -33753977 + MADE1 DNA Mariner 1 80 0 23 33 0 0 chr13 85991005 85991035 -33753863 + AT_rich Low_complexity Low_complexity 1 30 0 198 381 0 0 chr13 85991145 85991229 -33753669 - MER5B DNA MER1_type -69 109 26 223 160 0 40 chr13 85992608 85992658 -33752240 + A-rich Low_complexity Low_complexity 1 48 0 1813 153 0 24 chr13 85993148 85993459 -33751439 - AluSx SINE Alu 0 306 3 2126 120 0 3 chr13 85993821 85994122 -33750776 - AluSq SINE Alu -13 300 1 33 0 0 0 chr13 85994448 85994481 -33750417 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr13 85996104 85996136 -33748762 + AT_rich Low_complexity Low_complexity 1 32 0 30 0 0 0 chr13 85996354 85996384 -33748514 + AT_rich Low_complexity Low_complexity 1 30 0 2365 90 0 0 chr13 85996546 85996846 -33748052 + AluSg SINE Alu 1 300 -10 203 95 48 0 chr13 85996943 85996985 -33747913 + (TATG)n Simple_repeat Simple_repeat 2 45 0 1454 6 0 0 chr13 85997085 85997248 -33747650 + AluY SINE Alu 149 311 0 180 341 62 40 chr13 85997248 85997424 -33747474 - L2 LINE L2 -541 2773 2594 22 0 0 0 chr13 85997809 85997831 -33747067 + AT_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr13 85998412 85998438 -33746460 + (T)n Simple_repeat Simple_repeat 1 26 0 1568 218 124 12 chr13 86000323 86000726 -33744172 + MER31B LTR ERV1 9 456 -10 569 287 65 34 chr13 86001118 86001470 -33743428 - L1M4 LINE L1 -2974 3172 2810 491 265 1 0 chr13 86001488 86001623 -33743275 + L1MA6 LINE L1 6153 6297 -3 12657 221 34 18 chr13 86001825 86003554 -33741344 - HAL1b LINE L1 0 6165 4465 231 36 0 0 chr13 86003554 86003582 -33741316 + (TG)n Simple_repeat Simple_repeat 1 28 0 12657 221 34 18 chr13 86003582 86003627 -33741271 - HAL1b LINE L1 -1700 4465 4422 1188 244 28 11 chr13 86003627 86003914 -33740984 - AluJb SINE Alu -10 292 1 12657 221 34 18 chr13 86003914 86006606 -33738292 - HAL1b LINE L1 -1743 4422 268 407 158 0 11 chr13 86006621 86006716 -33738182 + (TA)n Simple_repeat Simple_repeat 1 94 0 503 143 0 12 chr13 86007003 86007087 -33737811 - MLT1C LTR MaLR -384 83 1 180 328 90 0 chr13 86009580 86009647 -33735251 - L2 LINE L2 -38 3275 3203 1989 104 0 3 chr13 86010384 86010672 -33734226 + L1PA8 LINE L1 5886 6172 0 2193 55 44 0 chr13 86011337 86011609 -33733289 + AluY SINE Alu 1 284 -27 24 0 0 0 chr13 86011609 86011633 -33733265 + AT_rich Low_complexity Low_complexity 1 24 0 7703 179 26 6 chr13 86011733 86014208 -33730690 + L1MA6 LINE L1 3775 6297 -3 1324 290 41 73 chr13 86014504 86014522 -33730376 - LTR52-int LTR ERVL -2129 2867 2850 1190 249 80 23 chr13 86014522 86014920 -33729978 - LTR52 LTR ERVL 0 421 1 1324 290 41 73 chr13 86014920 86015107 -33729791 - LTR52-int LTR ERVL -2146 2850 2659 5793 164 54 13 chr13 86015107 86016289 -33728609 + Tigger3b DNA MER2_type 1 1231 0 1324 290 41 73 chr13 86016289 86016803 -33728095 - LTR52-int LTR ERVL -2337 2659 2171 237 119 0 0 chr13 86016803 86016845 -33728053 + (TG)n Simple_repeat Simple_repeat 1 42 0 1324 290 41 73 chr13 86016845 86016900 -33727998 - LTR52-int LTR ERVL -2825 2171 2116 917 356 45 44 chr13 86017197 86017900 -33726998 - LTR52-int LTR ERVL -3398 1598 895 30 0 0 0 chr13 86018778 86018808 -33726090 + AT_rich Low_complexity Low_complexity 1 30 0 36 53 0 0 chr13 86019053 86019110 -33725788 + AT_rich Low_complexity Low_complexity 1 57 0 2040 123 3 3 chr13 86019112 86019412 -33725486 + AluSx SINE Alu 1 300 -12 1814 141 29 4 chr13 86019589 86019865 -33725033 + AluSc SINE Alu 1 283 -26 21 0 0 0 chr13 86020270 86020291 -33724607 + AT_rich Low_complexity Low_complexity 1 21 0 225 332 115 38 chr13 86023171 86023406 -33721492 + L3 LINE CR1 342 594 -983 200 176 39 0 chr13 86023739 86023790 -33721108 + A-rich Low_complexity Low_complexity 2 54 0 2367 54 3 10 chr13 86023834 86024132 -33720766 + AluY SINE Alu 1 296 -15 2389 48 24 3 chr13 86024557 86024852 -33720046 - AluY SINE Alu -10 301 1 1235 277 54 18 chr13 86025258 86025702 -33719196 - LTR40b LTR ERVL 0 462 3 340 118 29 15 chr13 86025778 86025846 -33719052 + CT-rich Low_complexity Low_complexity 2 70 0 2052 142 3 0 chr13 86026141 86026450 -33718448 + AluSg SINE Alu 1 310 0 25 65 0 0 chr13 86027154 86027200 -33717698 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr13 86027471 86027492 -33717406 + AT_rich Low_complexity Low_complexity 1 21 0 1558 162 22 11 chr13 86028021 86028293 -33716605 - AluSx SINE Alu -33 279 5 227 147 162 15 chr13 86030266 86030334 -33714564 - LTR48 LTR ERV1 -46 741 664 24 67 0 0 chr13 86031025 86031070 -33713828 + AT_rich Low_complexity Low_complexity 1 45 0 2290 309 31 8 chr13 86031201 86031913 -33712985 + L1M4b LINE L1 4 731 -6128 1302 211 19 48 chr13 86031913 86032226 -33712672 - LTR52-int LTR ERVL -968 2588 2285 407 90 0 39 chr13 86033362 86033440 -33711458 + L1PA6 LINE L1 6080 6154 0 27735 136 12 61 chr13 86033639 86035274 -33709624 - L1PA8 LINE L1 -4 6168 4454 3486 121 2 4 chr13 86035274 86035786 -33709112 + MER9 LTR ERVK 1 511 0 27735 136 12 61 chr13 86035786 86040646 -33704252 - L1PA8 LINE L1 -1718 4454 4 24 32 0 0 chr13 86041080 86041111 -33703787 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr13 86042042 86042067 -33702831 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 86043479 86043507 -33701391 + AT_rich Low_complexity Low_complexity 1 28 0 184 279 44 15 chr13 86043908 86043976 -33700922 - MIR SINE MIR -72 136 67 2436 225 93 49 chr13 86044586 86044982 -33699916 - L1MC3 LINE L1 -8 7777 7400 2260 166 20 39 chr13 86044982 86045471 -33699427 - L1MA10 LINE L1 0 6334 5855 2436 225 93 49 chr13 86045471 86045936 -33698962 - L1MC3 LINE L1 -385 7400 6878 2184 92 7 0 chr13 86045951 86046246 -33698652 + MER4E LTR ERV1 470 766 0 525 290 5 31 chr13 86046274 86046467 -33698431 - L1MCb LINE L1 -5697 348 161 4386 226 21 47 chr13 86046500 86048214 -33696684 - L1PA15-16 LINE L1 -3171 3678 1996 3345 151 75 2 chr13 86048365 86048956 -33695942 + MER51A LTR ERV1 1 634 0 435 273 13 13 chr13 86051656 86051810 -33693088 + MER3 DNA MER1_type 15 168 -41 4200 224 67 9 chr13 86051810 86052837 -33692061 - L1MC3 LINE L1 -28 7757 6671 237 177 0 101 chr13 86052839 86052918 -33691980 + MER3 DNA MER1_type 135 205 -4 218 333 12 12 chr13 86052948 86053032 -33691866 + MIR SINE MIR 29 112 -150 21 36 0 0 chr13 86053060 86053088 -33691810 + AT_rich Low_complexity Low_complexity 1 28 0 875 272 110 26 chr13 86053148 86053530 -33691368 + MER90 LTR ERV1 51 464 -150 1925 273 95 69 chr13 86053787 86054759 -33690139 - MER52A LTR ERV1 -4 1751 747 2470 56 7 0 chr13 86054759 86055064 -33689834 - AluY SINE Alu -4 307 1 1925 273 95 69 chr13 86055064 86055172 -33689726 - MER52A LTR ERV1 -1008 747 643 24 32 0 0 chr13 86055392 86055423 -33689475 + AT_rich Low_complexity Low_complexity 1 31 0 300 250 0 12 chr13 86057288 86057372 -33687526 + CT-rich Low_complexity Low_complexity 2 84 0 356 284 98 53 chr13 86057983 86058208 -33686690 + MIR SINE MIR 18 252 -10 1995 136 28 25 chr13 86060173 86060534 -33684364 - THE1B LTR MaLR -2 362 1 2165 114 0 7 chr13 86061564 86061872 -33683026 + AluSg SINE Alu 1 306 -4 23 54 0 0 chr13 86062375 86062412 -33682486 + AT_rich Low_complexity Low_complexity 1 37 0 30 69 0 0 chr13 86063158 86063216 -33681682 + AT_rich Low_complexity Low_complexity 1 58 0 2402 67 0 0 chr13 86063262 86063560 -33681338 - AluY SINE Alu -12 299 2 298 336 18 26 chr13 86063620 86063733 -33681165 - MIR3 SINE MIR -1 207 96 23 54 0 0 chr13 86063895 86063932 -33680966 + AT_rich Low_complexity Low_complexity 1 37 0 370 173 25 12 chr13 86064894 86064975 -33679923 + LTR40a LTR ERVL 372 453 -66 2452 60 0 0 chr13 86066130 86066431 -33678467 + AluY SINE Alu 1 301 -10 1514 96 209 8 chr13 86067344 86067583 -33677315 + AluSg1 SINE Alu 3 289 -20 1272 240 48 15 chr13 86067784 86068117 -33676781 - MLT1A1 LTR MaLR 0 365 22 501 84 0 0 chr13 86068591 86068662 -33676236 + (CA)n Simple_repeat Simple_repeat 2 72 0 22 35 0 0 chr13 86069116 86069145 -33675753 + AT_rich Low_complexity Low_complexity 1 29 0 2258 144 11 3 chr13 86069242 86069603 -33675295 + THE1B LTR MaLR 1 364 0 228 255 9 38 chr13 86070084 86070190 -33674708 - L1MC4 LINE L1 -1339 6703 6601 1325 228 38 12 chr13 86070948 86071294 -33673604 - MLT1C LTR MaLR 0 467 113 21 57 0 0 chr13 86071449 86071484 -33673414 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr13 86072117 86072154 -33672744 + AT_rich Low_complexity Low_complexity 1 37 0 29 47 0 0 chr13 86072174 86072217 -33672681 + AT_rich Low_complexity Low_complexity 1 43 0 479 296 98 26 chr13 86072734 86072994 -33671904 - L1ME1 LINE L1 -1 6177 5886 304 294 92 34 chr13 86072992 86073254 -33671644 - L1M4 LINE L1 -2689 3457 3181 * 235 175 32 16 chr13 86073264 86073327 -33671571 + MER53 DNA DNA 2 65 -124 224 306 0 0 chr13 86073509 86073581 -33671317 + (TA)n Simple_repeat Simple_repeat 2 73 0 2449 94 46 11 chr13 86073583 86073956 -33670942 - MLT2A1 LTR ERVL -58 386 1 18389 85 4 3 chr13 86073956 86077741 -33667157 - HERVL-A1 LTR ERVL 0 5654 1784 231 83 0 0 chr13 86077745 86077781 -33667117 - AluSx SINE Alu -7 294 259 1615 137 12 8 chr13 86077781 86078029 -33666869 + AluSq SINE Alu 3 251 -62 307 264 195 31 chr13 86079385 86079544 -33665354 - MER5A DNA MER1_type -1 188 4 25 65 0 0 chr13 86079893 86079939 -33664959 + AT_rich Low_complexity Low_complexity 1 46 0 29 28 0 0 chr13 86080011 86080047 -33664851 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr13 86080500 86080535 -33664363 + AT_rich Low_complexity Low_complexity 1 35 0 327 78 0 0 chr13 86080764 86080815 -33664083 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1961 120 0 7 chr13 86080829 86081105 -33663793 - AluSx SINE Alu -38 274 1 243 0 0 0 chr13 86082161 86082188 -33662710 + (CA)n Simple_repeat Simple_repeat 2 28 0 342 205 0 0 chr13 86083321 86083399 -33661499 + (TA)n Simple_repeat Simple_repeat 2 79 0 1731 221 26 66 chr13 86083632 86083712 -33661186 + MER67D LTR ERV1 1 83 -431 1472 234 25 30 chr13 86083712 86084079 -33660819 - MLT1A1 LTR MaLR 0 365 1 1731 221 26 66 chr13 86084079 86084528 -33660370 + MER67D LTR ERV1 83 509 -5 198 0 0 0 chr13 86084746 86084768 -33660130 + (A)n Simple_repeat Simple_repeat 1 22 0 1027 183 109 44 chr13 86085060 86085334 -33659564 - L1MA9 LINE L1 0 6312 6021 22 0 0 0 chr13 86086196 86086218 -33658680 + AT_rich Low_complexity Low_complexity 1 22 0 927 294 125 46 chr13 86086793 86087337 -33657561 + MLT1E LTR MaLR 3 589 -4 558 269 51 49 chr13 86087523 86088091 -33656807 - L1ME2 LINE L1 -97 6067 5436 853 264 0 6 chr13 86088398 86088580 -33656318 + MER5A DNA MER1_type 1 181 -8 249 184 73 73 chr13 86089387 86089496 -33655402 - MER53 DNA DNA -62 127 19 1066 281 60 10 chr13 86089500 86090087 -33654811 - L1ME2 LINE L1 -3022 3124 2509 21 0 0 0 chr13 86090127 86090148 -33654750 + AT_rich Low_complexity Low_complexity 1 21 0 898 203 99 26 chr13 86091611 86091937 -33652961 - MLT1B LTR MaLR 0 390 1 32 75 0 0 chr13 86092127 86092194 -33652704 + AT_rich Low_complexity Low_complexity 1 67 0 180 302 0 0 chr13 86094632 86094685 -33650213 - MIR SINE MIR -73 189 137 1941 124 7 0 chr13 86094710 86094992 -33649906 - AluSx SINE Alu -28 284 1 2171 102 0 0 chr13 86096007 86096301 -33648597 + AluY SINE Alu 1 294 -17 270 281 125 23 chr13 86097317 86097445 -33647453 - L2 LINE L2 -3 3310 3170 2216 244 91 20 chr13 86097467 86098150 -33646748 + L1MCa LINE L1 23 753 -5673 509 367 73 48 chr13 86098163 86098645 -33646253 - L2 LINE L2 -190 3123 2625 22 70 0 0 chr13 86098737 86098780 -33646118 + AT_rich Low_complexity Low_complexity 1 43 0 207 133 44 44 chr13 86099017 86099059 -33645839 - MIR3 SINE MIR -10 198 157 267 333 85 18 chr13 86099059 86099224 -33645674 - MER5B DNA MER1_type -1 177 2 21 0 0 0 chr13 86099380 86099401 -33645497 + AT_rich Low_complexity Low_complexity 1 21 0 248 225 0 11 chr13 86099953 86100042 -33644856 + CT-rich Low_complexity Low_complexity 3 90 0 180 345 9 35 chr13 86100043 86100156 -33644742 + L2 LINE L2 3183 3292 -21 405 252 50 88 chr13 86100223 86100485 -33644413 - LTR41 LTR ERVL -11 762 511 29 47 0 0 chr13 86100698 86100741 -33644157 + AT_rich Low_complexity Low_complexity 1 43 0 3764 319 40 39 chr13 86100745 86101673 -33643225 + ERVL LTR ERVL 3519 4444 -1320 1870 201 0 29 chr13 86101673 86102047 -33642851 - MLT1A1 LTR MaLR -2 363 1 3764 319 40 39 chr13 86102047 86103000 -33641898 + ERVL LTR ERVL 4444 5402 -362 429 36 0 0 chr13 86103018 86103073 -33641825 + (TG)n Simple_repeat Simple_repeat 2 56 0 595 0 27 0 chr13 86103747 86103822 -33641076 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 1076 187 176 56 chr13 86103835 86104209 -33640689 - MSTC LTR MaLR 0 428 10 923 325 42 62 chr13 86104352 86105128 -33639770 - ERVL LTR ERVL -3932 1832 1072 1450 267 9 3 chr13 86105163 86105493 -33639405 - MER74B LTR ERVL -224 398 67 456 260 8 8 chr13 86105882 86106005 -33638893 - LTR41 LTR ERVL -634 139 17 205 191 24 0 chr13 86106108 86106150 -33638748 + (CA)n Simple_repeat Simple_repeat 2 44 0 232 322 44 11 chr13 86106233 86106323 -33638575 + L2 LINE L2 2423 2515 -799 340 346 71 37 chr13 86106395 86106664 -33638234 + MLT1I LTR MaLR 112 389 -20 853 214 43 19 chr13 86106970 86107180 -33637718 - MLT2D LTR ERVL -199 215 1 199 333 36 72 chr13 86158674 86158785 -33586113 + L2 LINE L2 3156 3262 -10 1738 265 23 55 chr13 86158794 86159398 -33585500 + L1M3e LINE L1 466 1050 -6439 5352 171 47 7 chr13 86159544 86159983 -33584915 + Tigger3b DNA MER2_type 76 496 -2532 204 40 0 0 chr13 86159983 86160008 -33584890 + (TG)n Simple_repeat Simple_repeat 2 26 0 5352 171 47 7 chr13 86160008 86160048 -33584850 + Tigger3b DNA MER2_type 496 533 -2495 2248 102 0 10 chr13 86160048 86160353 -33584545 + AluSg1 SINE Alu 3 304 -5 5352 171 47 7 chr13 86160353 86160944 -33583954 + Tigger3b DNA MER2_type 533 1190 -41 2332 263 56 62 chr13 86161047 86162483 -33582415 + L1M3e LINE L1 2090 3517 -4048 932 209 20 92 chr13 86162602 86162894 -33582004 - LTR56 LTR ERV1 -174 271 1 254 231 99 11 chr13 86162973 86163064 -33581834 - LTR43 LTR ERV1 -315 287 189 2742 298 50 5 chr13 86163321 86164133 -33580765 - L1M4b LINE L1 -6004 855 7 29 60 0 0 chr13 86164662 86164712 -33580186 + AT_rich Low_complexity Low_complexity 1 50 0 39 22 0 0 chr13 86165055 86165101 -33579797 + AT_rich Low_complexity Low_complexity 1 46 0 842 88 0 0 chr13 86165309 86165422 -33579476 + L1M1 LINE L1 5661 5773 -527 29 60 0 0 chr13 86165496 86165546 -33579352 + AT_rich Low_complexity Low_complexity 1 50 0 3244 215 50 16 chr13 86165978 86166352 -33578546 - L1 LINE L1 -1779 4367 4007 612 201 22 0 chr13 86166352 86166486 -33578412 - L1PA16 LINE L1 -1 6165 6029 3244 215 50 16 chr13 86166486 86166907 -33577991 - L1 LINE L1 -2139 4007 3545 771 125 0 0 chr13 86167008 86167136 -33577762 + AluY SINE Alu 184 311 0 222 118 0 0 chr13 86167137 86167171 -33577727 + (TA)n Simple_repeat Simple_repeat 2 35 0 1493 190 49 49 chr13 86169187 86169576 -33575322 + MLT1B LTR MaLR 2 390 0 241 282 30 15 chr13 86171263 86171394 -33573504 + (TAGA)n Simple_repeat Simple_repeat 3 135 0 22 0 0 0 chr13 86171582 86171604 -33573294 + AT_rich Low_complexity Low_complexity 1 22 0 201 397 88 13 chr13 86171892 86172197 -33572701 + L2 LINE L2 2437 2764 -550 386 298 117 5 chr13 86174075 86174263 -33570635 - MIR SINE MIR -45 217 9 21 0 0 0 chr13 86174840 86174861 -33570037 + AT_rich Low_complexity Low_complexity 1 21 0 1777 164 40 30 chr13 86174939 86175310 -33569588 + THE1C LTR MaLR 1 375 0 1070 283 16 70 chr13 86175354 86175899 -33568999 + LTR40a LTR ERVL 4 519 0 30 0 0 0 chr13 86176036 86176066 -33568832 + AT_rich Low_complexity Low_complexity 1 30 0 6013 242 42 66 chr13 86176386 86176412 -33568486 + ERVL-C1 LTR ERVL 1246 1271 -4493 1942 182 73 3 chr13 86176412 86176796 -33568102 + LTR57 LTR ERVL 1 411 0 6013 242 42 66 chr13 86176796 86178229 -33566669 + ERVL-C1 LTR ERVL 1271 2725 -3039 281 132 206 29 chr13 86178229 86178297 -33566601 - MADE1 DNA Mariner 0 80 1 6013 242 42 66 chr13 86178297 86178548 -33566350 + ERVL-C1 LTR ERVL 2725 2981 -2783 23 33 0 0 chr13 86178548 86178578 -33566320 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr13 86178758 86178781 -33566117 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 9508 271 36 19 chr13 86178797 86181486 -33563412 + ERVL-C1 LTR ERVL 2929 5653 -1 824 209 39 0 chr13 86181486 86181668 -33563230 + MLT2C1 LTR ERVL 1 189 -208 662 269 19 0 chr13 86181669 86181829 -33563069 + FRAM SINE Alu 1 163 -13 2231 129 0 0 chr13 86181831 86182140 -33562758 + AluY SINE Alu 3 311 0 525 213 22 107 chr13 86182146 86182371 -33562527 + MLT2C1 LTR ERVL 190 395 -2 286 390 121 11 chr13 86183498 86183688 -33561210 + L2 LINE L2 2564 2774 -540 1446 189 7 76 chr13 86184066 86184389 -33560509 + AluJb SINE Alu 2 303 0 2432 70 0 0 chr13 86184389 86184689 -33560209 + AluY SINE Alu 2 301 -10 237 33 0 0 chr13 86184689 86184719 -33560179 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 22 88 0 0 chr13 86185089 86185146 -33559752 + AT_rich Low_complexity Low_complexity 1 57 0 1855 275 68 21 chr13 86187084 86188405 -33556493 - L1ME1 LINE L1 -205 6772 5394 1094 129 35 0 chr13 86188408 86188579 -33556319 - MER4B LTR ERV1 0 610 434 21 0 0 0 chr13 86188827 86188848 -33556050 + AT_rich Low_complexity Low_complexity 1 21 0 217 221 11 11 chr13 86189507 86189580 -33555318 + (TA)n Simple_repeat Simple_repeat 1 76 -19 1384 193 15 97 chr13 86189580 86189973 -33554925 - MLT1A1 LTR MaLR -4 361 1 217 221 11 11 chr13 86189973 86189994 -33554904 + (TA)n Simple_repeat Simple_repeat 75 95 0 193 388 116 8 chr13 86190119 86190248 -33554650 - MIR3 SINE MIR -43 165 23 310 317 102 0 chr13 86190259 86190426 -33554472 - L1ME1 LINE L1 -4488 2471 2288 1147 228 94 33 chr13 86190456 86190785 -33554113 - L1ME1 LINE L1 -5563 1296 948 23 33 0 0 chr13 86190794 86190824 -33554074 + AT_rich Low_complexity Low_complexity 1 30 0 1685 125 49 62 chr13 86190839 86191144 -33553754 - AluSx SINE Alu -11 301 1 1371 250 8 0 chr13 86191267 86191643 -33553255 + L1 LINE L1 3420 3798 -2348 * 5117 192 27 37 chr13 86191641 86192933 -33551965 + L1 LINE L1 4027 5305 -841 4643 178 32 19 chr13 86192927 86193551 -33551347 + L1MA8 LINE L1 5200 5847 -444 * 1550 165 40 0 chr13 86193551 86193823 -33551075 + AluJb SINE Alu 12 294 -18 4643 178 32 19 chr13 86193823 86194269 -33550629 + L1MA8 LINE L1 5847 6285 -6 2023 119 26 10 chr13 86194286 86194598 -33550300 + L1PA13 LINE L1 5847 6163 0 329 331 122 35 chr13 86194776 86195120 -33549778 - L2 LINE L2 -640 2674 2301 554 367 58 14 chr13 86195193 86195471 -33549427 - LTR16C LTR ERVL -2 489 200 24 32 0 0 chr13 86195493 86195524 -33549374 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 86195801 86195830 -33549068 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 86196360 86196389 -33548509 + AT_rich Low_complexity Low_complexity 1 29 0 4218 210 51 39 chr13 86196884 86197482 -33547416 - L1MA10 LINE L1 -3 6331 5741 2486 62 0 0 chr13 86197482 86197789 -33547109 + AluY SINE Alu 3 309 -2 4218 210 51 39 chr13 86197789 86198051 -33546847 - L1MA10 LINE L1 -593 5741 5483 236 29 0 29 chr13 86198051 86198085 -33546813 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 4218 210 51 39 chr13 86198085 86198372 -33546526 - L1MA10 LINE L1 -851 5483 5201 207 0 0 0 chr13 86198372 86198395 -33546503 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4218 210 51 39 chr13 86198395 86199021 -33545877 - L1MA10 LINE L1 -1133 5201 4420 198 0 0 0 chr13 86199406 86199428 -33545470 + (A)n Simple_repeat Simple_repeat 1 22 0 2590 44 0 19 chr13 86199429 86199746 -33545152 - AluY SINE Alu 0 311 1 180 0 0 0 chr13 86199896 86199916 -33544982 + (A)n Simple_repeat Simple_repeat 1 20 0 37 52 0 0 chr13 86200190 86200248 -33544650 + AT_rich Low_complexity Low_complexity 1 58 0 281 234 21 11 chr13 86201511 86201605 -33543293 + (TA)n Simple_repeat Simple_repeat 1 95 0 223 234 0 0 chr13 86202184 86202231 -33542667 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 33 43 0 0 chr13 86202423 86202470 -33542428 + AT_rich Low_complexity Low_complexity 1 47 0 27 49 0 0 chr13 86202492 86202533 -33542365 + AT_rich Low_complexity Low_complexity 1 41 0 427 333 163 5 chr13 86202615 86203027 -33541871 - L1M4 LINE L1 -2970 3176 2700 22 0 0 0 chr13 86204749 86204771 -33540127 + AT_rich Low_complexity Low_complexity 1 22 0 521 356 57 4 chr13 86205160 86205407 -33539491 + MIR SINE MIR 3 262 0 192 40 0 0 chr13 86206246 86206271 -33538627 + (TG)n Simple_repeat Simple_repeat 2 26 0 396 359 55 51 chr13 86207175 86207707 -33537191 + L2 LINE L2 2516 3048 -224 270 224 0 82 chr13 86207831 86207916 -33536982 + L2 LINE L2 3221 3298 -15 759 229 49 6 chr13 86211439 86211622 -33533276 + MER58B DNA MER1_type 136 326 -15 349 291 26 0 chr13 86212154 86212271 -33532627 - MIR SINE MIR 0 262 143 22 88 0 0 chr13 86212532 86212589 -33532309 + AT_rich Low_complexity Low_complexity 1 57 0 1389 149 0 4 chr13 86212648 86212883 -33532015 - L1PA14 LINE L1 0 6161 5928 3591 206 8 6 chr13 86213100 86214124 -33530774 - L1PA14 LINE L1 -601 5565 4540 1387 244 49 35 chr13 86214230 86214635 -33530263 + L1PA13 LINE L1 1347 1757 -5030 1023 93 0 0 chr13 86214634 86214773 -33530125 + THE1C-int LTR MaLR 259 397 -1183 * 5040 143 172 8 chr13 86214803 86215728 -33529170 + THE1C-int LTR MaLR 504 1580 0 2496 118 11 5 chr13 86215728 86216101 -33528797 + THE1C LTR MaLR 1 375 0 430 198 20 10 chr13 86216101 86216202 -33528696 + L1 LINE L1 4867 4968 -1178 2030 121 10 3 chr13 86216214 86216520 -33528378 + THE1C LTR MaLR 68 375 0 6156 216 22 109 chr13 86216541 86217745 -33527153 + L1PA13 LINE L1 1889 3196 -3601 423 0 0 0 chr13 86217745 86217792 -33527106 + (TA)n Simple_repeat Simple_repeat 1 47 0 6156 216 22 109 chr13 86217792 86218450 -33526448 + L1PA13 LINE L1 3196 3909 -2888 1364 180 25 50 chr13 86218450 86218765 -33526133 + AluJo SINE Alu 13 320 0 6156 216 22 109 chr13 86218765 86220241 -33524657 + L1PA13 LINE L1 3909 5197 -1600 591 269 90 64 chr13 86221163 86221350 -33523548 - L1MEd LINE L1 -4872 1247 1066 285 29 0 0 chr13 86221350 86221384 -33523514 + (TA)n Simple_repeat Simple_repeat 2 35 0 591 269 90 64 chr13 86221384 86221840 -33523058 - L1MEd LINE L1 -5053 1066 587 2453 136 3 0 chr13 86221932 86222293 -33522605 - THE1B LTR MaLR -2 362 1 7259 164 26 16 chr13 86222502 86223810 -33521088 - Tigger1 DNA MER2_type 0 2418 1098 1605 163 158 78 chr13 86223810 86224184 -33520714 - MER4A LTR ERV1 0 664 261 552 147 32 0 chr13 86224184 86224279 -33520619 - MER4A LTR ERV1 -566 98 1 4245 213 25 15 chr13 86224279 86225216 -33519682 - Tigger1 DNA MER2_type -1321 1097 152 1147 142 0 0 chr13 86225212 86225388 -33519510 - Tigger1 DNA MER2_type -842 1576 1401 * 814 196 0 26 chr13 86225394 86225547 -33519351 - Tigger1 DNA MER2_type -2269 149 1 2586 109 102 0 chr13 86225923 86226364 -33518534 + LTR19A LTR ERV1 1 486 0 23 33 0 0 chr13 86226734 86226764 -33518134 + AT_rich Low_complexity Low_complexity 1 30 0 388 277 20 0 chr13 86227293 86227394 -33517504 - MER70B LTR ERVL -22 556 454 2451 175 96 39 chr13 86229468 86230086 -33514812 + MER44D DNA MER2_type 53 705 0 4195 190 47 19 chr13 86230190 86230378 -33514520 - L1PA16 LINE L1 -9 6157 5976 1869 166 134 8 chr13 86230378 86230758 -33514140 + MSTA LTR MaLR 1 428 0 8404 171 8 45 chr13 86230760 86232399 -33512499 + MSTA-int LTR MaLR 3 1580 0 1559 198 131 13 chr13 86232399 86232782 -33512116 + MSTA LTR MaLR 1 428 0 4195 190 47 19 chr13 86232782 86233879 -33511019 - L1PA16 LINE L1 -189 5977 4829 1621 193 49 5 chr13 86233874 86234242 -33510656 + L1PA16 LINE L1 4447 4830 -1316 * 290 278 120 31 chr13 86234442 86234633 -33510265 - L2 LINE L2 -70 3243 3036 283 265 22 70 chr13 86235414 86235594 -33509304 - MLT1E2 LTR MaLR -276 229 112 341 291 0 23 chr13 86235634 86235720 -33509178 - MLT1E2 LTR MaLR -542 84 1 2418 191 35 11 chr13 86236713 86237259 -33507639 + L1MA3 LINE L1 5747 6305 0 1472 227 53 63 chr13 86237782 86238307 -33506591 + MLT2B1 LTR ERVL 1 520 0 1207 242 46 3 chr13 86238338 86238623 -33506275 + AluJb SINE Alu 3 299 -3 1223 94 0 6 chr13 86238642 86238707 -33506191 + (GAAA)n Simple_repeat Simple_repeat 1 244 0 1223 94 0 6 chr13 86238707 86238888 -33506010 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 239 204 0 0 chr13 86239880 86239929 -33504969 - MLT2B1 LTR ERVL -7 513 465 819 192 0 6 chr13 86239933 86240089 -33504809 - L1M2 LINE L1 -507 5793 5639 1336 181 29 7 chr13 86240348 86240624 -33504274 - L1MA6 LINE L1 -4 6296 6015 483 150 12 0 chr13 86240624 86240704 -33504194 + L1M2 LINE L1 5565 5645 -655 28 61 0 0 chr13 86241453 86241502 -33503396 + AT_rich Low_complexity Low_complexity 1 49 0 1455 189 36 7 chr13 86241542 86241823 -33503075 + AluSx SINE Alu 1 289 -23 353 164 62 7 chr13 86241823 86241969 -33502929 + (TA)n Simple_repeat Simple_repeat 1 154 0 306 180 101 22 chr13 86241970 86242059 -33502839 - L1MC4 LINE L1 -1339 6703 6608 466 133 0 0 chr13 86243037 86243112 -33501786 + MADE1 DNA Mariner 6 80 0 1704 24 14 0 chr13 86243900 86244110 -33500788 + L1PA3 LINE L1 5940 6152 -3 1533 54 0 105 chr13 86244443 86244682 -33500216 + AluY SINE Alu 70 283 -28 585 0 0 0 chr13 86244682 86244747 -33500151 + (CA)n Simple_repeat Simple_repeat 2 66 0 307 139 0 76 chr13 86244973 86245052 -33499846 + L1MA5 LINE L1 6227 6299 -1 501 256 51 40 chr13 86245135 86245311 -33499587 - MER8 DNA MER2_type -61 178 1 471 286 103 8 chr13 86247112 86247346 -33497552 - MER110 LTR ERV1 -66 425 170 2546 108 3 0 chr13 86248219 86248562 -33496336 + THE1A LTR MaLR 1 344 -11 11137 103 6 7 chr13 86248567 86250142 -33494756 + THE1A-int LTR MaLR 1 1574 -6 2532 99 6 0 chr13 86250147 86250500 -33494398 + THE1A LTR MaLR 1 355 0 449 306 14 57 chr13 86250609 86250818 -33494080 - L2 LINE L2 -5 3308 3109 446 252 45 26 chr13 86250842 86250997 -33493901 + MER106B DNA MER1_type 1 158 -901 21 57 0 0 chr13 86251271 86251306 -33493592 + AT_rich Low_complexity Low_complexity 1 35 0 26 88 0 0 chr13 86252386 86252454 -33492444 + AT_rich Low_complexity Low_complexity 1 68 0 28 48 0 0 chr13 86254342 86254384 -33490514 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr13 86254692 86254716 -33490182 + AT_rich Low_complexity Low_complexity 1 24 0 1994 120 11 0 chr13 86254802 86255076 -33489822 + AluSx SINE Alu 21 297 -15 4347 205 38 15 chr13 86255234 86256580 -33488318 - L1MA8 LINE L1 -4 6287 4905 1676 152 3 50 chr13 86256584 86256881 -33488017 + AluSx SINE Alu 5 287 -25 2366 212 29 0 chr13 86256896 86257443 -33487455 - L1MA8 LINE L1 -1292 4854 4292 39 22 0 0 chr13 86257769 86257815 -33487083 + AT_rich Low_complexity Low_complexity 1 46 0 282 218 18 0 chr13 86257946 86258001 -33486897 - L2 LINE L2 -10 3303 3248 280 22 44 22 chr13 86258003 86258048 -33486850 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 299 179 15 0 chr13 86258089 86258156 -33486742 - L1 LINE L1 -930 5216 5149 23 68 0 0 chr13 86258314 86258358 -33486540 + AT_rich Low_complexity Low_complexity 1 44 0 37 90 0 0 chr13 86258537 86258637 -33486261 + AT_rich Low_complexity Low_complexity 1 100 0 3000 184 54 18 chr13 86259705 86260358 -33484540 - L1MA8 LINE L1 -8 6283 5608 771 257 16 5 chr13 86260516 86260703 -33484195 - MLT1A1 LTR MaLR -1 364 176 549 274 43 6 chr13 86261019 86261183 -33483715 - MER69A DNA AcHobo 0 177 8 182 182 0 0 chr13 86261203 86261236 -33483662 - MER5B DNA MER1_type -123 55 23 203 191 24 0 chr13 86262242 86262284 -33482614 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 905 296 18 5 chr13 86262605 86262828 -33482070 + L1MDb LINE L1 9 234 -6175 2175 283 77 17 chr13 86262850 86263606 -33481292 + MER21B LTR ERV1 15 815 -48 3422 244 52 15 chr13 86263670 86264513 -33480385 + MER21-int LTR ERV1 3083 3956 -2802 299 275 0 0 chr13 86264514 86264594 -33480304 - MLT1A1 LTR MaLR 0 365 286 625 315 0 0 chr13 86264723 86264888 -33480010 + MER21-int LTR ERV1 1708 1872 -2319 1842 189 109 55 chr13 86264947 86265084 -33479814 + MLT2B2 LTR ERVL 2 130 -385 2315 84 3 3 chr13 86265084 86265395 -33479503 + AluY SINE Alu 1 311 0 1842 189 109 55 chr13 86265395 86265745 -33479153 + MLT2B2 LTR ERVL 130 515 0 332 318 41 18 chr13 86265937 86266107 -33478791 + ERVL LTR ERVL 2552 2725 -3039 1688 232 69 14 chr13 86266148 86266584 -33478314 - MLT1D LTR MaLR -45 460 1 1802 204 69 32 chr13 86266585 86267080 -33477818 + L1MC3 LINE L1 7272 7784 -1 656 252 51 43 chr13 86267123 86267377 -33477521 + L1MC/D LINE L1 3513 3768 -2378 1709 223 87 69 chr13 86267387 86268352 -33476546 + L1MC/D LINE L1 4851 5823 -536 200 125 25 0 chr13 86268424 86268464 -33476434 + A-rich Low_complexity Low_complexity 4 44 0 210 105 0 0 chr13 86269067 86269105 -33475793 + (TC)n Simple_repeat Simple_repeat 1 38 0 319 295 12 36 chr13 86269107 86269273 -33475625 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 * 480 277 0 23 chr13 86269210 86269387 -33475511 + (TA)n Simple_repeat Simple_repeat 2 174 0 313 176 27 0 chr13 86269395 86269469 -33475429 + (TATG)n Simple_repeat Simple_repeat 2 77 0 194 345 138 9 chr13 86269806 86269922 -33474976 + L2 LINE L2 1851 1981 -1333 220 214 0 0 chr13 86270120 86270162 -33474736 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 423 98 0 0 chr13 86270163 86270224 -33474674 + (CA)n Simple_repeat Simple_repeat 2 62 0 303 28 0 0 chr13 86270235 86270271 -33474627 + (GA)n Simple_repeat Simple_repeat 1 36 0 254 387 13 13 chr13 86272267 86272417 -33472481 + LTR67 LTR ERVL 44 193 -364 272 296 96 7 chr13 86272591 86272726 -33472172 + LTR67 LTR ERVL 403 549 -8 28 48 0 0 chr13 86273828 86273870 -33471028 + AT_rich Low_complexity Low_complexity 1 42 0 24 77 0 0 chr13 86274038 86274090 -33470808 + AT_rich Low_complexity Low_complexity 1 52 0 926 246 35 0 chr13 86274177 86274409 -33470489 - AluJo SINE Alu -22 290 51 269 287 52 17 chr13 86274434 86274549 -33470349 - MIR SINE MIR -140 122 4 2668 168 2 0 chr13 86274604 86275062 -33469836 + L1PA16 LINE L1 5708 6166 0 1688 96 0 8 chr13 86275802 86276061 -33468837 + L1PA10 LINE L1 5914 6170 0 2227 92 3 0 chr13 86276379 86276671 -33468227 + AluY SINE Alu 3 295 -16 27 29 0 0 chr13 86276825 86276859 -33468039 + AT_rich Low_complexity Low_complexity 1 34 0 266 278 236 23 chr13 86277357 86277616 -33467282 - L1ME3A LINE L1 -183 5987 5674 216 245 39 20 chr13 86277750 86277852 -33467046 + (TATAA)n Simple_repeat Simple_repeat 1 104 0 537 265 53 65 chr13 86277873 86278106 -33466792 - L1ME3A LINE L1 -743 5403 5169 2286 65 0 0 chr13 86278106 86278382 -33466516 - AluY SINE Alu -17 294 19 537 265 53 65 chr13 86278382 86278531 -33466367 - L1ME3A LINE L1 -977 5169 5052 1763 111 0 85 chr13 86278531 86278837 -33466061 + AluY SINE Alu 16 295 -16 537 265 53 65 chr13 86278837 86278853 -33466045 - L1ME3A LINE L1 -1094 5052 5037 2020 108 0 3 chr13 86279014 86279302 -33465596 + AluSx SINE Alu 6 292 -20 325 328 17 0 chr13 86279304 86279420 -33465478 - L1ME3A LINE L1 -1305 4841 4724 331 326 88 16 chr13 86279696 86280015 -33464883 - L1ME3A LINE L1 -2302 3844 3503 1751 273 68 41 chr13 86280080 86280889 -33464009 - L1ME3A LINE L1 -11 6159 5329 235 210 12 12 chr13 86281786 86281867 -33463031 + (TA)n Simple_repeat Simple_repeat 2 82 0 3160 182 12 21 chr13 86282851 86283532 -33461366 - L1MA4 LINE L1 -6 6294 5620 1956 197 16 14 chr13 86283537 86284303 -33460595 + L1MA4 LINE L1 4855 5619 -686 22 0 0 0 chr13 86284519 86284541 -33460357 + AT_rich Low_complexity Low_complexity 1 22 0 2289 135 62 2 chr13 86284541 86284963 -33459935 - L1MA6 LINE L1 -6 6294 5848 903 120 8 0 chr13 86285148 86285281 -33459617 - L1PA10 LINE L1 -5 6163 6030 180 111 0 0 chr13 86285445 86285472 -33459426 + (TC)n Simple_repeat Simple_repeat 2 28 0 366 266 139 13 chr13 86287066 86287224 -33457674 + MIR SINE MIR 40 217 -45 294 29 0 0 chr13 86288345 86288380 -33456518 + (CA)n Simple_repeat Simple_repeat 2 36 0 2140 106 0 10 chr13 86289322 86289625 -33455273 + AluSg1 SINE Alu 3 302 -7 4089 164 26 45 chr13 86289740 86290594 -33454304 - L1MB3 LINE L1 -7 6176 5339 246 208 0 0 chr13 86290591 86290639 -33454259 + L1M4 LINE L1 5238 5285 -861 * 200 35 35 0 chr13 86290648 86290677 -33454221 + (CAA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 86292142 86292163 -33452735 + AT_rich Low_complexity Low_complexity 1 21 0 1125 214 18 39 chr13 86292527 86292807 -33452091 - AluJo SINE Alu -34 278 5 22 70 0 0 chr13 86293856 86293899 -33450999 + AT_rich Low_complexity Low_complexity 1 43 0 249 167 0 0 chr13 86295221 86295275 -33449623 + (TG)n Simple_repeat Simple_repeat 2 55 0 385 300 27 33 chr13 86295462 86295612 -33449286 - L2 LINE L2 -2355 959 811 574 338 83 56 chr13 86295658 86296090 -33448808 - L2 LINE L2 -2662 652 209 2219 105 3 6 chr13 86296999 86297313 -33447585 - AluSq SINE Alu 0 313 1 887 157 0 46 chr13 86297346 86297499 -33447399 + FRAM SINE Alu 1 145 -31 207 0 0 0 chr13 86297502 86297525 -33447373 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 382 168 30 30 chr13 86298409 86298510 -33446388 + L1MA9 LINE L1 6212 6312 0 681 310 16 66 chr13 86298514 86298879 -33446019 - L1MCb LINE L1 -5698 347 1 384 302 28 6 chr13 86299016 86299194 -33445704 - L1MCa LINE L1 -5883 323 64 2108 97 3 14 chr13 86299275 86299563 -33445335 + AluSx SINE Alu 5 289 -23 290 214 61 38 chr13 86299563 86299586 -33445312 - L1ME LINE L1 -5223 847 826 1695 177 43 25 chr13 86299586 86299954 -33444944 + THE1C LTR MaLR 1 375 0 290 214 61 38 chr13 86299954 86300061 -33444837 - L1ME LINE L1 -5244 826 714 183 42 0 0 chr13 86300102 86300126 -33444772 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 248 348 38 33 chr13 86300126 86300310 -33444588 - L1ME LINE L1 -5441 629 445 311 353 46 71 chr13 86300422 86300705 -33444193 - L1ME LINE L1 -5777 293 18 22 94 0 0 chr13 86301344 86301408 -33443490 + AT_rich Low_complexity Low_complexity 1 64 0 3656 21 0 7 chr13 86301430 86301865 -33443033 - L1PA2 LINE L1 0 6155 5724 2169 106 7 0 chr13 86302032 86302333 -33442565 + AluSp SINE Alu 1 303 -10 22 56 0 0 chr13 86302447 86302483 -33442415 + AT_rich Low_complexity Low_complexity 1 36 0 1771 163 37 26 chr13 86302977 86303298 -33441600 - L1MB1 LINE L1 -1 6167 5840 2110 147 6 15 chr13 86303298 86303638 -33441260 + MER1B DNA MER1_type 1 337 0 1771 163 37 26 chr13 86303638 86303697 -33441201 - L1MB1 LINE L1 -328 5840 5783 1606 216 49 0 chr13 86303803 86304132 -33440766 + MER7A DNA MER2_type 4 346 0 302 256 12 12 chr13 86306518 86306600 -33438298 - L1MB1 LINE L1 -2115 5693 5612 240 208 0 0 chr13 86308227 86308275 -33436623 - MADE1 DNA Mariner -27 53 6 478 229 210 29 chr13 86308806 86309011 -33435887 - L2 LINE L2 -81 3232 2991 5093 185 20 1 chr13 86309030 86309907 -33434991 + MER54A LTR ERVL 8 901 0 2201 82 4 0 chr13 86309910 86310190 -33434708 + AluSx SINE Alu 1 281 -31 187 377 46 29 chr13 86310193 86310368 -33434530 - L2 LINE L2 -340 2974 2797 21 0 0 0 chr13 86310475 86310496 -33434402 + AT_rich Low_complexity Low_complexity 1 21 0 261 223 30 17 chr13 86311458 86311701 -33433197 + (TA)n Simple_repeat Simple_repeat 1 246 0 283 298 44 44 chr13 86311842 86312023 -33432875 + L1MEc LINE L1 35 215 -6181 2081 112 0 0 chr13 86312121 86312407 -33432491 + AluSx SINE Alu 21 306 -6 271 253 38 85 chr13 86312549 86312842 -33432056 + L1M4 LINE L1 3262 3540 -2606 3742 150 35 0 chr13 86313343 86313948 -33430950 + L1PA14 LINE L1 4 629 -5517 7389 97 3 9 chr13 86314048 86315112 -33429786 - L1P LINE L1 -4304 1842 786 4734 178 17 12 chr13 86315387 86316975 -33427923 + L1PA14 LINE L1 4357 5954 -207 12845 59 1 3 chr13 86317086 86318790 -33426108 + L1P LINE L1 2175 3875 -2271 828 31 0 0 chr13 86318802 86318899 -33425999 + L1PA5 LINE L1 6051 6147 -7 382 344 112 17 chr13 86318905 86319146 -33425752 + L1M4 LINE L1 4069 4332 -1814 4533 156 14 15 chr13 86319503 86320317 -33424581 - Tigger1 DNA MER2_type 0 2418 1606 2346 80 0 0 chr13 86320392 86320693 -33424205 - AluY SINE Alu -10 301 1 231 119 0 0 chr13 86322148 86322190 -33422708 - LTR66 LTR ERVL -171 439 398 249 348 30 12 chr13 86322228 86322392 -33422506 + L1M1 LINE L1 687 853 -6712 1895 135 0 0 chr13 86322910 86323222 -33421676 - L1P LINE L1 -765 5381 5070 2744 53 36 6 chr13 86323222 86323574 -33421324 + L1PA8 LINE L1 5802 6169 -3 29 28 0 0 chr13 86323574 86323610 -33421288 + AT_rich Low_complexity Low_complexity 1 36 0 254 357 149 21 chr13 86323655 86323983 -33420915 - L2 LINE L2 -513 2801 2432 186 352 131 54 chr13 86323977 86324275 -33420623 - L3 LINE CR1 -233 1344 1024 * 1768 162 3 7 chr13 86324326 86324623 -33420275 + AluSx SINE Alu 1 296 -16 267 103 0 0 chr13 86324625 86324664 -33420234 + (T)n Simple_repeat Simple_repeat 1 39 0 287 303 14 21 chr13 86324952 86325094 -33419804 + (TATATG)n Simple_repeat Simple_repeat 3 143 0 4169 154 58 14 chr13 86326206 86326997 -33417901 + LTR1B LTR ERV1 1 826 0 214 200 0 0 chr13 86329504 86329544 -33415354 + (TA)n Simple_repeat Simple_repeat 2 41 0 243 61 0 0 chr13 86329545 86329578 -33415320 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 231 355 47 53 chr13 86330782 86330951 -33413947 + L3 LINE CR1 1406 1573 -4 192 284 57 45 chr13 86331018 86331106 -33413792 - L2 LINE L2 -4 3268 3180 967 242 115 11 chr13 86331288 86331557 -33413341 - MSTD LTR MaLR 0 396 100 2072 107 7 0 chr13 86331732 86332022 -33412876 + AluSq SINE Alu 1 292 -21 473 333 53 12 chr13 86332123 86332366 -33412532 + L1M4b LINE L1 143 395 -6464 1828 304 49 17 chr13 86332498 86333336 -33411562 - L1ME3A LINE L1 0 6170 5306 1149 295 103 14 chr13 86333370 86334018 -33410880 - L1ME3A LINE L1 -945 5201 4496 301 249 176 49 chr13 86334286 86334491 -33410407 - L1ME3A LINE L1 -2229 3917 3687 506 294 91 23 chr13 86334669 86334890 -33410008 - MLT1I LTR MaLR 0 409 174 297 0 0 0 chr13 86334978 86335011 -33409887 + (CA)n Simple_repeat Simple_repeat 1 33 0 299 223 0 43 chr13 86335408 86335502 -33409396 + L1MC4 LINE L1 6624 6713 -1329 217 258 65 43 chr13 86336116 86336209 -33408689 + MIR SINE MIR 156 250 -12 23 33 0 0 chr13 86336514 86336544 -33408354 + AT_rich Low_complexity Low_complexity 1 30 0 195 162 0 0 chr13 86336609 86336646 -33408252 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 5530 197 178 35 chr13 86336723 86338258 -33406640 - MER52A LTR ERV1 0 1755 1 24 0 0 0 chr13 86340399 86340423 -33404475 + AT_rich Low_complexity Low_complexity 1 24 0 29 60 0 0 chr13 86340482 86340532 -33404366 + AT_rich Low_complexity Low_complexity 1 50 0 1656 149 131 24 chr13 86340537 86340866 -33404032 + THE1B LTR MaLR 1 364 0 10675 116 9 7 chr13 86340866 86342440 -33402458 + THE1B-int LTR MaLR 1 1578 -2 1793 151 101 21 chr13 86342442 86342779 -33402119 + THE1B LTR MaLR 1 364 0 365 283 216 35 chr13 86342996 86343434 -33401464 - MLT1G3 LTR MaLR 0 542 1 346 299 82 35 chr13 86344319 86344854 -33400044 + L1ME3A LINE L1 4619 5178 -968 1104 326 81 7 chr13 86344862 86345304 -33399594 - MLT1E LTR MaLR 0 593 119 282 299 161 22 chr13 86345305 86345442 -33399456 - MLT1E LTR MaLR -430 163 8 302 306 61 7 chr13 86345446 86345593 -33399305 + L1ME3A LINE L1 5179 5333 -813 36 82 0 0 chr13 86345709 86345794 -33399104 + AT_rich Low_complexity Low_complexity 1 85 0 561 296 150 15 chr13 86345948 86346421 -33398477 + L1ME3A LINE L1 5631 6167 -3 395 315 55 30 chr13 86347151 86347316 -33397582 - MIR SINE MIR -56 206 38 2049 199 0 43 chr13 86347355 86347823 -33397075 + L1MA6 LINE L1 3759 4206 -1940 1734 216 28 0 chr13 86347821 86348447 -33396451 + L1P5 LINE L1 4885 5523 -633 * 3726 163 96 33 chr13 86348434 86349324 -33395574 + L1MA6 LINE L1 5323 6268 -32 23 0 0 0 chr13 86351247 86351270 -33393628 + AT_rich Low_complexity Low_complexity 1 23 0 186 281 33 116 chr13 86351612 86351685 -33393213 + MER5A DNA MER1_type 2 63 -126 1441 259 82 21 chr13 86351685 86352159 -33392739 - MLT1D LTR MaLR 0 505 3 186 281 33 116 chr13 86352159 86352206 -33392692 + MER5A DNA MER1_type 63 112 -77 561 347 18 25 chr13 86352872 86353146 -33391752 + L1M3a LINE L1 1083 1354 -5673 1632 279 72 25 chr13 86353221 86354163 -33390735 + L1M3a LINE L1 1789 2767 -4340 1807 181 0 3 chr13 86354186 86354484 -33390414 + AluSx SINE Alu 3 299 -13 240 196 0 0 chr13 86354488 86354544 -33390354 + L1MC4 LINE L1 6648 6703 -1339 21 0 0 0 chr13 86354544 86354565 -33390333 + AT_rich Low_complexity Low_complexity 1 21 0 7053 245 22 19 chr13 86354565 86356625 -33388273 + L1ME LINE L1 3427 5487 -679 1309 247 3 0 chr13 86356628 86356911 -33387987 - MLT-int LTR MaLR -1220 515 232 726 223 0 6 chr13 86357440 86357597 -33387301 - MLT1G3-int LTR MaLR -1427 308 153 283 280 196 0 chr13 86357597 86357704 -33387194 - MLT1G3 LTR MaLR -192 338 211 2346 106 34 17 chr13 86358373 86358730 -33386168 - THE1B LTR MaLR -1 363 1 664 307 20 39 chr13 86358776 86359030 -33385868 + MIR SINE MIR 14 262 0 285 308 138 6 chr13 86359734 86359893 -33385005 - MLT1G3 LTR MaLR 0 590 411 383 286 34 25 chr13 86359929 86360048 -33384850 - MLT1G3 LTR MaLR -257 273 154 711 296 14 5 chr13 86360521 86360741 -33384157 + MER58A DNA MER1_type 2 223 -1 267 104 0 0 chr13 86361399 86361447 -33383451 + (T)n Simple_repeat Simple_repeat 1 48 0 1878 189 44 18 chr13 86361471 86361857 -33383041 + MSTD LTR MaLR 1 396 0 437 275 98 22 chr13 86361874 86362067 -33382831 + MLT1G LTR MaLR 32 231 -364 204 319 33 55 chr13 86362692 86362783 -33382115 + MIR SINE MIR 13 101 -161 198 71 0 0 chr13 86362880 86362908 -33381990 + (TTA)n Simple_repeat Simple_repeat 3 30 0 694 294 115 10 chr13 86363448 86363744 -33381154 - MLT1I LTR MaLR -15 394 68 22 0 0 0 chr13 86366225 86366247 -33378651 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr13 86366613 86366663 -33378235 + AT_rich Low_complexity Low_complexity 1 50 0 964 199 105 51 chr13 86366725 86367001 -33377897 - L1MC1 LINE L1 0 6333 6043 1352 160 17 80 chr13 86367001 86367301 -33377597 - Tigger7 DNA MER2_type 0 2587 2307 636 172 0 0 chr13 86367312 86367411 -33377487 - Tigger7 DNA MER2_type -2322 165 67 2912 190 13 6 chr13 86367411 86367959 -33376939 - L1MC1 LINE L1 -297 6036 5485 21 0 0 0 chr13 86368976 86368997 -33375901 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 86369034 86369055 -33375843 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 86369871 86369894 -33375004 + AT_rich Low_complexity Low_complexity 1 23 0 1530 194 4 7 chr13 86371017 86371295 -33373603 - AluJb SINE Alu -7 305 29 1227 258 0 3 chr13 86371617 86371912 -33372986 + AluJo SINE Alu 1 294 -18 498 150 60 68 chr13 86372038 86372171 -33372727 + LTR40a LTR ERVL 381 512 -7 328 306 81 0 chr13 86372242 86372366 -33372532 + HERVL40 LTR ERVL 97 230 -5300 367 271 12 0 chr13 86372741 86372826 -33372072 + HERVL40 LTR ERVL 1272 1357 -4173 274 279 128 56 chr13 86373499 86373678 -33371220 - HERVL40 LTR ERVL -2766 2764 2573 2243 307 64 32 chr13 86373703 86375075 -33369823 + HERVL40 LTR ERVL 1311 4299 -1231 391 197 0 0 chr13 86375074 86375145 -33369753 + HERVL40 LTR ERVL 2041 2111 -926 * 21 36 0 0 chr13 86375267 86375295 -33369603 + AT_rich Low_complexity Low_complexity 1 28 0 265 260 49 81 chr13 86375581 86375704 -33369194 + HERVL40 LTR ERVL 2592 2710 -327 320 361 69 15 chr13 86375837 86376228 -33368670 + MER89-int LTR ERV1 6081 6492 -309 * 459 309 168 12 chr13 86376168 86376424 -33368474 + HERVL40 LTR ERVL 5235 5530 0 297 293 89 58 chr13 86376578 86376837 -33368061 + LTR40a LTR ERVL 148 414 -105 242 196 0 0 chr13 86376929 86376975 -33367923 + L1MC4 LINE L1 6660 6705 -1337 25 65 0 0 chr13 86377001 86377047 -33367851 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr13 86377155 86377176 -33367722 + AT_rich Low_complexity Low_complexity 1 21 0 1618 204 16 21 chr13 86377931 86378303 -33366595 + L1MD1 LINE L1 5571 5940 -302 733 212 14 14 chr13 86378499 86378645 -33366253 - AluJo SINE Alu -164 148 3 39 22 0 0 chr13 86378709 86378755 -33366143 + AT_rich Low_complexity Low_complexity 1 46 0 654 304 129 22 chr13 86379342 86379839 -33365059 + MLT1H1 LTR MaLR 5 554 -1 330 151 0 14 chr13 86381806 86381879 -33363019 + L1MA4 LINE L1 6223 6294 -6 2054 129 0 0 chr13 86381999 86382285 -33362613 + AluSx SINE Alu 8 293 -19 25 51 0 0 chr13 86382973 86383012 -33361886 + AT_rich Low_complexity Low_complexity 1 39 0 264 100 0 0 chr13 86383507 86383547 -33361351 + (CA)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr13 86383848 86383872 -33361026 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 11043 35 2 0 chr13 86383875 86385957 -33358941 - L1PA4 LINE L1 -13 6142 4057 1681 51 0 0 chr13 86385957 86386173 -33358725 + L1PA4 LINE L1 3841 4056 -2090 356 316 48 38 chr13 86386321 86386530 -33358368 + L1MEc LINE L1 1265 1475 -4921 238 215 140 32 chr13 86386889 86386982 -33357916 - MLT1H LTR MaLR -387 162 60 215 306 0 24 chr13 86387599 86387723 -33357175 + A-rich Low_complexity Low_complexity 5 125 0 3643 78 4 0 chr13 86387852 86388340 -33356558 - L1PA5 LINE L1 0 6154 5665 185 94 31 0 chr13 86389364 86389396 -33355502 + (TA)n Simple_repeat Simple_repeat 2 34 0 186 302 78 78 chr13 86389482 86389611 -33355287 + L3 LINE CR1 293 421 -1156 658 283 116 8 chr13 86391513 86391764 -33353134 + MER92A LTR ERV1 1 278 -134 9075 207 12 22 chr13 86391797 86393600 -33351298 - L1M1 LINE L1 -5765 1800 16 418 228 0 41 chr13 86393606 86393729 -33351169 + MER92A LTR ERV1 286 403 -9 5030 64 6 0 chr13 86393755 86394399 -33350499 + L1PA7 LINE L1 5505 6152 -2 194 320 0 27 chr13 86394406 86394481 -33350417 + L2 LINE L2 1705 1777 -1537 28 0 0 0 chr13 86395105 86395133 -33349765 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr13 86395513 86395550 -33349348 + AT_rich Low_complexity Low_complexity 1 37 0 5884 216 28 5 chr13 86395898 86397213 -33347685 + L1P LINE L1 2920 4265 -1881 3451 135 5 2 chr13 86397317 86397873 -33347025 + L1PA14 LINE L1 5603 6160 -1 511 345 60 26 chr13 86399374 86399434 -33345464 + L1ME1 LINE L1 34 90 -6306 189 0 0 0 chr13 86399434 86399455 -33345443 + (CAA)n Simple_repeat Simple_repeat 1 21 0 511 345 60 26 chr13 86399455 86399774 -33345124 + L1ME1 LINE L1 90 426 -5970 406 208 0 0 chr13 86400017 86400113 -33344785 - L1MB1 LINE L1 -1894 4252 4157 * 3122 215 80 26 chr13 86400109 86401698 -33343200 + L1MB1 LINE L1 4262 5946 -222 4912 171 37 37 chr13 86401698 86403432 -33341466 + L1MA6 LINE L1 4566 6300 0 730 317 79 20 chr13 86403597 86404143 -33340755 + L1ME1 LINE L1 4108 4685 -1530 * 2341 248 56 19 chr13 86404069 86405220 -33339678 - L1MB8 LINE L1 -1 6177 4077 701 152 38 0 chr13 86405228 86405360 -33339538 - Tigger1 DNA MER2_type -2140 278 142 2407 122 11 13 chr13 86405364 86405740 -33339158 + THE1C LTR MaLR 1 375 0 7283 141 134 46 chr13 86405741 86407193 -33337705 + THE1C-int LTR MaLR 2 1580 0 2140 158 41 6 chr13 86407193 86407555 -33337343 + THE1C LTR MaLR 1 375 0 607 211 30 8 chr13 86407561 86407694 -33337204 - Tigger1 DNA MER2_type -2282 136 1 225 296 59 61 chr13 86407700 86407917 -33336981 - L1MB8 LINE L1 -3595 2551 2335 1417 223 0 0 chr13 86407917 86408241 -33336657 - AluJb SINE Alu 0 324 1 225 296 59 61 chr13 86408241 86408465 -33336433 - L1MB8 LINE L1 -3811 2335 2110 444 336 40 70 chr13 86408465 86408497 -33336401 - L1M4 LINE L1 -4177 2961 2930 1168 166 22 5 chr13 86408497 86408720 -33336178 - L1MC1 LINE L1 -1 6332 6106 444 336 40 70 chr13 86408720 86409187 -33335711 - L1M4 LINE L1 -4208 2930 2477 4375 291 43 30 chr13 86409501 86411694 -33333204 - L1M4 LINE L1 -4709 2250 13 891 256 113 19 chr13 86411752 86412220 -33332678 + L1ME1 LINE L1 4686 5197 -1018 230 216 68 34 chr13 86412278 86412366 -33332532 - L1M4 LINE L1 -848 5298 5208 4002 162 60 3 chr13 86412449 86413213 -33331685 + L1MA6 LINE L1 5493 6300 0 824 279 77 53 chr13 86413306 86413775 -33331123 + L1ME1 LINE L1 5750 6229 -6 2210 120 0 0 chr13 86414076 86414385 -33330513 - AluSg SINE Alu -1 309 1 21 36 0 0 chr13 86414965 86414993 -33329905 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 86415048 86415080 -33329818 + AT_rich Low_complexity Low_complexity 1 32 0 419 311 59 18 chr13 86415489 86415708 -33329190 - MIR SINE MIR -6 256 29 23 0 0 0 chr13 86416420 86416443 -33328455 + AT_rich Low_complexity Low_complexity 1 23 0 281 259 12 12 chr13 86418264 86418345 -33326553 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 183 80 0 0 chr13 86418417 86418442 -33326456 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 202 234 11 43 chr13 86418486 86418580 -33326318 + (TA)n Simple_repeat Simple_repeat 2 92 0 264 180 0 0 chr13 86419013 86419063 -33325835 + MER61D-int LTR ERV1 205 254 -6837 707 216 121 20 chr13 86419317 86419516 -33325382 + MER61D-int LTR ERV1 235 453 -4764 3077 174 33 47 chr13 86419613 86419666 -33325232 + MER61D-int LTR ERV1 697 749 -4468 303 266 0 0 chr13 86419666 86419745 -33325153 - MADE1 DNA Mariner 0 80 2 3077 174 33 47 chr13 86419745 86419782 -33325116 + MER61D-int LTR ERV1 749 785 -4432 185 0 40 0 chr13 86419782 86419807 -33325091 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3077 174 33 47 chr13 86419807 86420474 -33324424 + MER61D-int LTR ERV1 785 4607 -610 * 9862 139 18 11 chr13 86420469 86422337 -33322561 + MER61D-int LTR ERV1 2411 5217 0 2251 172 114 8 chr13 86422337 86422793 -33322105 + MER61D LTR ERV1 1 501 0 183 42 0 0 chr13 86423225 86423249 -33321649 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 31 26 0 0 chr13 86426185 86426223 -33318675 + AT_rich Low_complexity Low_complexity 1 38 0 594 284 76 87 chr13 86427189 86427464 -33317434 - L2 LINE L2 -513 2801 2530 442 262 133 38 chr13 86427478 86427688 -33317210 + L2 LINE L2 3080 3309 -4 1619 275 96 21 chr13 86427724 86427900 -33316998 - L2 LINE L2 -774 2540 2378 2411 148 59 0 chr13 86427900 86428304 -33316594 + MSTC LTR MaLR 1 428 0 1619 275 96 21 chr13 86428304 86428734 -33316164 - L2 LINE L2 -936 2378 1889 1774 225 34 5 chr13 86428749 86429135 -33315763 - MLT1C LTR MaLR 0 467 71 926 280 69 24 chr13 86429191 86429566 -33315332 - L2 LINE L2 -1471 1843 1452 194 341 34 57 chr13 86429577 86429665 -33315233 - L2 LINE L2 -50 3222 3137 382 288 16 53 chr13 86430804 86430990 -33313908 + MIR SINE MIR 27 206 -56 270 0 0 0 chr13 86432694 86432724 -33312174 + (CA)n Simple_repeat Simple_repeat 2 31 0 189 342 79 26 chr13 86432987 86433101 -33311797 + MIR SINE MIR 11 130 -78 33 0 0 0 chr13 86433663 86433696 -33311202 + AT_rich Low_complexity Low_complexity 1 33 0 277 371 16 0 chr13 86434006 86434130 -33310768 + L2 LINE L2 3188 3313 0 11050 218 15 4 chr13 86434856 86436971 -33307927 + L1M1 LINE L1 18 2155 -5410 7926 152 5 44 chr13 86436963 86438384 -33306514 + MSTA-int LTR MaLR 117 1481 -99 * 1842 169 122 21 chr13 86438396 86438780 -33306118 + MSTA LTR MaLR 1 423 -5 4414 184 16 7 chr13 86438787 86438992 -33305906 + L1MA3 LINE L1 5236 5438 -867 2038 121 7 14 chr13 86438992 86439281 -33305617 + AluSq SINE Alu 1 287 -26 4414 184 16 7 chr13 86439281 86440103 -33304795 + L1MA3 LINE L1 5438 6299 -6 804 215 9 22 chr13 86440270 86440498 -33304400 + L1M1 LINE L1 3734 3958 -3607 1123 260 32 11 chr13 86440561 86440838 -33304060 + MSTD LTR MaLR 110 392 -4 1418 291 23 5 chr13 86440843 86441276 -33303622 + MSTD-int LTR MaLR 2 442 -1293 335 227 34 0 chr13 86441296 86441384 -33303514 + MSTD LTR MaLR 306 396 0 250 208 28 0 chr13 86441397 86441469 -33303429 + L1M1 LINE L1 3966 4039 -3526 1568 219 29 72 chr13 86442608 86443096 -33301802 + MLT1C LTR MaLR 1 467 0 1560 99 0 5 chr13 86443178 86443414 -33301484 + AluY SINE Alu 81 315 0 313 299 125 24 chr13 86443417 86444219 -33300679 + L1M1 LINE L1 4084 4989 -2576 17541 52 7 2 chr13 86444407 86447254 -33297644 + L1PA3 LINE L1 3127 5990 -165 667 284 93 29 chr13 86447364 86447783 -33297115 + L1ME3A LINE L1 5454 5899 -271 1124 148 66 0 chr13 86448989 86449185 -33295713 - Charlie3 DNA MER1_type -8 2702 2494 * 1490 208 0 7 chr13 86449184 86449453 -33295445 - Charlie3 DNA MER1_type -2443 267 1 1176 213 52 81 chr13 86449528 86449876 -33295022 + MLT1A1 LTR MaLR 28 365 0 951 92 0 8 chr13 86451689 86451820 -33293078 - L1P LINE L1 -1505 4641 4512 * 6328 90 2 0 chr13 86451819 86452706 -33292192 + L1P LINE L1 3200 4088 -2058 8444 101 7 2 chr13 86452711 86453940 -33290958 - L1P LINE L1 -2941 3205 1970 503 96 73 51 chr13 86453982 86454163 -33290735 - MER85 DNA T2_type 0 139 1 218 140 70 0 chr13 86455388 86455445 -33289453 + (TA)n Simple_repeat Simple_repeat 2 62 0 264 59 0 0 chr13 86455959 86455993 -33288905 + (TA)n Simple_repeat Simple_repeat 1 34 0 241 353 60 20 chr13 86456179 86456329 -33288569 + MIR3 SINE MIR 49 204 -4 554 206 8 30 chr13 86456359 86456490 -33288408 - LTR40a LTR ERVL 0 519 392 628 226 111 47 chr13 86456497 86456731 -33288167 - LTR40b LTR ERVL -194 268 20 1919 120 0 11 chr13 86457304 86457579 -33287319 - AluSg SINE Alu -16 294 23 487 304 60 8 chr13 86457860 86458110 -33286788 + Charlie2 DNA MER1_type 1878 2140 -722 869 260 115 35 chr13 86458353 86458691 -33286207 + L1MB8 LINE L1 13 377 -6165 1066 175 21 21 chr13 86458719 86458908 -33285990 - THE1-int LTR MaLR -765 815 627 874 270 4 28 chr13 86458919 86459171 -33285727 + L1MB8 LINE L1 443 688 -5854 471 113 0 0 chr13 86459173 86459244 -33285654 + (TCC)n Simple_repeat Simple_repeat 3 73 0 535 296 32 32 chr13 86459246 86459466 -33285432 + L1MB8 LINE L1 698 917 -5625 340 225 0 81 chr13 86459470 86459581 -33285317 + L1MB8 LINE L1 1816 1917 -4729 435 178 23 109 chr13 86459581 86459713 -33285185 + MLT1E1 LTR MaLR 63 188 -436 939 224 19 80 chr13 86459734 86459998 -33284900 + MLT1E1 LTR MaLR 407 654 0 1412 178 97 29 chr13 86460234 86460543 -33284355 + MER2 DNA MER2_type 9 338 -7 464 311 154 40 chr13 86460722 86460787 -33284111 + MLT1J LTR MaLR 1 57 -454 2570 46 0 0 chr13 86460787 86461089 -33283809 + AluY SINE Alu 1 302 -9 464 311 154 40 chr13 86461089 86461418 -33283480 + MLT1J LTR MaLR 57 440 -71 393 270 0 0 chr13 86461431 86461531 -33283367 + L1MB8 LINE L1 1915 2014 -4632 918 201 66 49 chr13 86461533 86461821 -33283077 + L1MB7 LINE L1 5863 6155 -29 1802 201 48 28 chr13 86462211 86462669 -33282229 + MLT1C LTR MaLR 1 467 0 271 284 68 0 chr13 86462810 86462898 -33282000 + MLT1J1 LTR MaLR 205 298 -148 26 0 0 0 chr13 86463263 86463289 -33281609 + AT_rich Low_complexity Low_complexity 1 26 0 422 232 71 18 chr13 86463527 86463639 -33281259 + MER45A DNA AcHobo 61 178 0 766 209 21 0 chr13 86464383 86464574 -33280324 + L1MB8 LINE L1 4858 5052 -1592 823 107 123 0 chr13 86464577 86464699 -33280199 + THE1B LTR MaLR 2 138 -226 8602 113 2 1 chr13 86464699 86465888 -33279010 + THE1-int LTR MaLR 120 1309 -271 1854 233 70 24 chr13 86465990 86466605 -33278293 + L1MB8 LINE L1 6034 6676 0 680 311 66 34 chr13 86466601 86467103 -33277795 + L1ME3A LINE L1 5428 5945 -225 * 231 280 90 40 chr13 86468165 86468265 -33276633 + L2 LINE L2 3208 3312 -1 3181 78 48 2 chr13 86468405 86468838 -33276060 + MLT2A2 LTR ERVL 1 453 0 1626 183 136 18 chr13 86469237 86469620 -33275278 - MSTA LTR MaLR 0 428 1 195 227 23 0 chr13 86470290 86470334 -33274564 - L3b LINE CR1 -10 1573 1529 224 258 15 0 chr13 86470569 86470635 -33274263 + (TA)n Simple_repeat Simple_repeat 1 67 0 23 54 0 0 chr13 86470766 86470803 -33274095 + AT_rich Low_complexity Low_complexity 1 37 0 231 368 37 7 chr13 86471041 86471177 -33273721 + LTR33 LTR ERVL 308 447 -74 662 319 76 30 chr13 86472846 86473150 -33271748 + ERVL LTR ERVL 2045 2362 -3402 747 134 0 0 chr13 86473182 86473294 -33271604 - L1PB1 LINE L1 -10 6141 6030 548 338 19 5 chr13 86473478 86473685 -33271213 - MLT1H LTR MaLR -322 227 18 1309 225 40 23 chr13 86475981 86476376 -33268522 - L1 LINE L1 -2505 4703 4302 * 2492 222 20 7 chr13 86476367 86476911 -33267987 - L1 LINE L1 -6658 551 1 454 121 43 43 chr13 86476926 86477042 -33267856 - L1M4 LINE L1 -942 5204 5089 1404 231 3 3 chr13 86477171 86477470 -33267428 - AluJb SINE Alu -6 306 8 297 287 117 0 chr13 86477654 86477748 -33267150 + MIR SINE MIR 53 157 -105 237 119 0 0 chr13 86477808 86477850 -33267048 + (CAT)n Simple_repeat Simple_repeat 2 43 0 29 70 0 0 chr13 86478247 86478304 -33266594 + AT_rich Low_complexity Low_complexity 1 57 0 2039 231 27 2 chr13 86479144 86479628 -33265270 + L1MC3 LINE L1 5437 5932 -1853 1945 148 0 0 chr13 86479977 86480267 -33264631 - AluSx SINE Alu -22 290 1 237 159 0 0 chr13 86480569 86480613 -33264285 + T-rich Low_complexity Low_complexity 2 45 0 21 95 0 0 chr13 86481037 86481100 -33263798 + AT_rich Low_complexity Low_complexity 1 63 0 461 314 146 30 chr13 86482223 86482935 -33261963 + L1MCa LINE L1 861 1816 -4610 1244 234 75 3 chr13 86483245 86483591 -33261307 + L1MC3 LINE L1 6318 6688 -1097 1781 162 41 28 chr13 86483598 86483962 -33260936 + THE1C LTR MaLR 7 375 0 9698 132 8 42 chr13 86483962 86485597 -33259301 + THE1C-int LTR MaLR 1 1580 0 1877 169 36 17 chr13 86485599 86485961 -33258937 + THE1C LTR MaLR 3 371 -4 1120 209 31 140 chr13 86485966 86486216 -33258682 + L1MC3 LINE L1 6689 6848 -937 213 65 0 0 chr13 86486216 86486247 -33258651 + (CA)n Simple_repeat Simple_repeat 1 31 0 1120 209 31 140 chr13 86486247 86486545 -33258353 + L1MC3 LINE L1 6848 7177 -608 225 0 0 0 chr13 86486966 86486991 -33257907 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 30 77 0 0 chr13 86488856 86488921 -33255977 + AT_rich Low_complexity Low_complexity 1 65 0 1533 305 19 10 chr13 86489029 86489514 -33255384 - ERVL LTR ERVL -3031 2733 2245 324 221 336 0 chr13 86489556 86489660 -33255238 + MER96 DNA MER1_type? 36 174 -1 22 0 0 0 chr13 86489872 86489894 -33255004 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr13 86490255 86490310 -33254588 + AT_rich Low_complexity Low_complexity 1 55 0 3347 95 2 0 chr13 86490756 86491208 -33253690 + MLT2A2 LTR ERVL 1 453 0 214 167 33 17 chr13 86491595 86491655 -33253243 + GA-rich Low_complexity Low_complexity 1 61 0 903 87 0 0 chr13 86491803 86491929 -33252969 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 5122 106 13 4 chr13 86492421 86493192 -33251706 + L1PA13 LINE L1 5367 6144 -19 1057 246 92 46 chr13 86493400 86493749 -33251149 + MLT1A1 LTR MaLR 1 365 0 437 311 193 22 chr13 86494006 86494327 -33250571 + L3 LINE CR1 1190 1565 -12 212 227 227 45 chr13 86494634 86494744 -33250154 - MER5A DNA MER1_type -48 141 12 488 235 29 7 chr13 86496174 86496310 -33248588 + MER103 DNA DNA 26 164 -2 267 218 13 64 chr13 86496678 86496756 -33248142 - Tigger2 DNA MER2_type -10 2708 2635 5474 132 3 11 chr13 86496783 86497655 -33247243 - L1PA15 LINE L1 -2 6163 5299 2130 101 90 3 chr13 86497656 86498001 -33246897 - Tigger2 DNA MER2_type -64 2654 2280 403 203 0 0 chr13 86497999 86498068 -33246830 - Tigger2 DNA MER2_type -2649 69 1 * 277 297 95 54 chr13 86498987 86499156 -33245742 - MER5A DNA MER1_type -3 186 1 331 278 37 62 chr13 86499391 86499553 -33245345 + HERVL LTR ERVL 3498 3655 -1999 420 287 19 0 chr13 86499595 86499703 -33245195 + HERVL LTR ERVL 4734 4843 -921 2083 142 44 0 chr13 86499715 86500053 -33244845 + THE1B LTR MaLR 2 354 -10 398 324 27 53 chr13 86500134 86500242 -33244656 + HERVL LTR ERVL 5015 5124 -640 2533 134 3 0 chr13 86500242 86500616 -33244282 + THE1C LTR MaLR 1 375 0 398 324 27 53 chr13 86500616 86500881 -33244017 + HERVL LTR ERVL 5124 5378 -386 287 307 78 68 chr13 86501027 86501336 -33243562 + LTR16A LTR ERVL 17 328 -122 225 0 0 0 chr13 86501462 86501487 -33243411 + (CA)n Simple_repeat Simple_repeat 2 26 0 2034 107 7 0 chr13 86501696 86501977 -33242921 - AluSx SINE Alu -19 293 11 21 0 0 0 chr13 86502454 86502475 -33242423 + AT_rich Low_complexity Low_complexity 1 21 0 660 249 32 22 chr13 86502646 86502831 -33242067 + MIR SINE MIR 2 188 -74 2007 110 14 0 chr13 86502943 86503274 -33241624 - AluSq SINE Alu 0 335 1 23 33 0 0 chr13 86504753 86504783 -33240115 + AT_rich Low_complexity Low_complexity 1 30 0 293 389 16 0 chr13 86506046 86506172 -33238726 + MIR3 SINE MIR 10 137 -71 261 57 0 0 chr13 86508325 86508360 -33236538 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 23 0 0 0 chr13 86509451 86509474 -33235424 + AT_rich Low_complexity Low_complexity 1 23 0 187 325 106 69 chr13 86510296 86510702 -33234196 - L2 LINE L2 -16 3297 2877 225 326 126 37 chr13 86511107 86511322 -33233576 - MLT1K LTR MaLR -168 420 187 313 215 0 0 chr13 86511453 86511518 -33233380 + MER53 DNA DNA 125 189 0 782 287 50 32 chr13 86511892 86512449 -33232449 + L1M4 LINE L1 4252 4818 -1328 362 273 70 21 chr13 86512927 86513235 -33231663 + L1MEc LINE L1 2282 2570 -3970 2426 61 3 3 chr13 86514087 86514399 -33230499 + THE1B-int LTR MaLR 1262 1573 -7 2041 124 47 47 chr13 86514401 86514763 -33230135 + THE1B LTR MaLR 1 362 -2 3483 221 18 4 chr13 86514763 86515605 -33229293 + L1PB4 LINE L1 4550 5403 -743 1648 157 16 3 chr13 86515615 86515921 -33228977 + L1MA2 LINE L1 5995 6304 0 3770 161 13 7 chr13 86515937 86516632 -33228266 + L1PB4 LINE L1 5447 6145 -11 915 271 83 6 chr13 86517361 86517700 -33227198 - L1ME3A LINE L1 -18 6152 5788 289 140 0 18 chr13 86518154 86518211 -33226687 + L1PA16 LINE L1 6080 6135 -31 717 266 61 95 chr13 86518606 86519246 -33225652 + L1MC5 LINE L1 6643 7260 -701 302 121 12 60 chr13 86519276 86519359 -33225539 + (CATATA)n Simple_repeat Simple_repeat 1 79 0 359 319 38 29 chr13 86519393 86519631 -33225267 + L1MC5 LINE L1 7290 7529 -432 2079 99 11 0 chr13 86520360 86520643 -33224255 + AluSq SINE Alu 1 286 -27 7153 257 42 14 chr13 86521570 86524006 -33220892 - L1 LINE L1 -1464 4682 2180 738 127 17 0 chr13 86524006 86524124 -33220774 - AluSx SINE Alu -1 309 190 1001 128 0 0 chr13 86524124 86524265 -33220633 - AluSx SINE Alu -172 141 1 776 96 0 9 chr13 86524265 86524380 -33220518 - L1PA15-16 LINE L1 -3955 2894 2781 538 135 104 0 chr13 86524382 86524478 -33220420 - U6 snRNA snRNA 0 107 2 3921 182 34 1 chr13 86524479 86524848 -33220050 - Tigger1 DNA MER2_type -1236 1182 826 408 20 0 0 chr13 86524848 86524897 -33220001 + (TG)n Simple_repeat Simple_repeat 2 50 0 3921 182 34 1 chr13 86524897 86525265 -33219633 - Tigger1 DNA MER2_type -1592 826 421 1041 304 20 9 chr13 86525627 86525973 -33218925 + L1M4b LINE L1 630 979 -5880 192 179 0 0 chr13 86526055 86526094 -33218804 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 23 0 0 0 chr13 86526113 86526136 -33218762 + AT_rich Low_complexity Low_complexity 1 23 0 653 242 28 71 chr13 86526395 86526787 -33218111 - L1ME LINE L1 -5182 888 514 347 283 0 72 chr13 86526928 86527094 -33217804 - L1ME LINE L1 -5539 531 378 247 233 244 0 chr13 86527231 86527317 -33217581 - L1ME LINE L1 -5917 153 47 1156 312 100 43 chr13 86527338 86528331 -33216567 - L1MEd LINE L1 -5035 1084 2 186 43 0 0 chr13 86528408 86528431 -33216467 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr13 86578706 86578735 -33166163 + AT_rich Low_complexity Low_complexity 1 29 0 311 266 11 32 chr13 86580492 86580586 -33164312 - MLT1K LTR MaLR -86 502 411 292 240 21 13 chr13 86580891 86580968 -33163930 - L1MEc LINE L1 -2461 3754 3673 2082 131 0 7 chr13 86581065 86581370 -33163528 + AluSx SINE Alu 1 303 -9 577 300 66 42 chr13 86581383 86582250 -33162648 - L1MEc LINE L1 -3639 2576 1732 798 288 74 42 chr13 86582258 86582395 -33162503 + L1M4 LINE L1 3864 3995 -2151 1863 101 3 101 chr13 86582395 86582713 -33162185 - AluSc SINE Alu -20 289 3 798 288 74 42 chr13 86582713 86583047 -33161851 + L1M4 LINE L1 3995 4350 -1796 28 79 0 0 chr13 86583163 86583226 -33161672 + AT_rich Low_complexity Low_complexity 1 63 0 537 234 158 19 chr13 86583848 86584006 -33160892 + MER5A DNA MER1_type 10 189 0 1041 277 74 55 chr13 86584462 86585043 -33159855 - MLT1E LTR MaLR 0 593 2 3338 153 61 55 chr13 86586229 86586955 -33157943 + LTR1 LTR ERV1 12 741 -44 9273 136 12 11 chr13 86587005 86588667 -33156231 + HUERS-P2 LTR ERV1 1184 2898 -190 3134 141 54 111 chr13 86588708 86589540 -33155358 + LTR1 LTR ERV1 1 785 0 325 268 98 0 chr13 86589665 86589777 -33155121 - MLT1E3 LTR MaLR -154 470 348 228 377 49 27 chr13 86591638 86591821 -33153077 - MIR SINE MIR -68 194 8 2449 182 19 19 chr13 86592026 86592657 -33152241 + LTR27 LTR ERV1 2 696 -141 751 285 119 48 chr13 86592966 86593443 -33151455 + MLT1H LTR MaLR 39 549 0 673 142 21 0 chr13 86594385 86594623 -33150275 + L1MA7 LINE L1 5943 6291 0 420 353 27 0 chr13 86595144 86595294 -33149604 + L2 LINE L2 3160 3313 0 230 333 14 0 chr13 86595446 86595518 -33149380 - MARNA DNA Mariner -381 205 133 1783 150 7 24 chr13 86595519 86595813 -33149085 - AluSq SINE Alu -23 290 2 644 296 168 19 chr13 86596131 86596452 -33148446 + L2 LINE L2 2936 3304 -9 396 318 68 59 chr13 86596565 86596889 -33148009 + L2 LINE L2 1455 1781 -1533 479 135 51 13 chr13 86596914 86597029 -33147869 + MLT1A1 LTR MaLR 274 365 0 441 0 0 0 chr13 86597854 86597903 -33146995 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 684 267 29 55 chr13 86598232 86598543 -33146355 + MER69 DNA AcHobo 2115 2417 -109 881 317 130 13 chr13 86598617 86599347 -33145551 + L2 LINE L2 1901 3131 -182 238 241 13 13 chr13 86599396 86599475 -33145423 + (TA)n Simple_repeat Simple_repeat 1 79 0 201 208 0 42 chr13 86600530 86600546 -33144352 + GA-rich Low_complexity Low_complexity 3 18 -30 2401 58 0 22 chr13 86600546 86600859 -33144039 + AluSc SINE Alu 1 306 -3 2154 115 0 13 chr13 86600859 86601172 -33143726 + AluSx SINE Alu 1 310 -2 201 208 0 42 chr13 86601172 86601202 -33143696 + GA-rich Low_complexity Low_complexity 16 48 0 556 342 50 31 chr13 86601446 86601870 -33143028 - L1M4 LINE L1 -2642 3504 3073 27 0 0 0 chr13 86601871 86601898 -33143000 + AT_rich Low_complexity Low_complexity 1 27 0 1051 267 124 28 chr13 86601955 86602452 -33142446 - MLT1F1 LTR MaLR -23 544 1 22 35 0 0 chr13 86602546 86602575 -33142323 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 86603083 86603104 -33141794 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 86603341 86603365 -33141533 + AT_rich Low_complexity Low_complexity 1 24 0 497 319 22 11 chr13 86603542 86603727 -33141171 + MIR SINE MIR 74 260 -2 283 349 0 69 chr13 86604017 86604192 -33140706 - MIR3 SINE MIR -15 193 31 281 368 0 18 chr13 86604238 86604352 -33140546 + MER5B DNA MER1_type 13 124 -54 31 44 0 0 chr13 86605319 86605364 -33139534 + AT_rich Low_complexity Low_complexity 1 45 0 658 157 16 0 chr13 86605853 86605974 -33138924 - L1PA13 LINE L1 -15 6148 6026 2101 95 49 0 chr13 86606913 86607197 -33137701 - AluY SINE Alu -9 302 5 287 330 10 0 chr13 86607842 86607945 -33136953 - MER70B LTR ERVL -16 562 459 2017 213 90 4 chr13 86609423 86609925 -33134973 - L1MD1 LINE L1 -36 6206 5662 1666 233 52 47 chr13 86609970 86610193 -33134705 - L1MD1 LINE L1 -966 5180 4960 279 0 0 0 chr13 86610193 86610224 -33134674 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1666 233 52 47 chr13 86610224 86610448 -33134450 - L1MD1 LINE L1 -1186 4960 4739 1807 165 24 0 chr13 86610448 86610739 -33134159 + AluSx SINE Alu 8 305 -7 1666 233 52 47 chr13 86610739 86610995 -33133903 - L1MD1 LINE L1 -1407 4739 4472 10936 196 30 18 chr13 86611124 86613498 -33131400 - L1P4 LINE L1 -400 5761 3354 2045 112 3 7 chr13 86613498 86613793 -33131105 - AluSc SINE Alu -15 294 1 10936 196 30 18 chr13 86613793 86614318 -33130580 - L1P4 LINE L1 -2807 3354 2837 362 183 0 0 chr13 86614615 86614675 -33130223 - MER90 LTR ERV1 -45 569 510 3552 107 186 2 chr13 86616590 86617171 -33127727 + LTR12 LTR ERV1 1 688 0 501 343 69 23 chr13 86617177 86617483 -33127415 - LTR16A LTR ERVL -16 434 115 24 0 0 0 chr13 86618614 86618638 -33126260 + AT_rich Low_complexity Low_complexity 1 24 0 43 71 0 0 chr13 86618884 86618969 -33125929 + AT_rich Low_complexity Low_complexity 1 85 0 30 27 0 0 chr13 86620156 86620193 -33124705 + AT_rich Low_complexity Low_complexity 1 37 0 1462 199 3 10 chr13 86620256 86620548 -33124350 - AluJo SINE Alu -20 292 3 22 0 0 0 chr13 86620884 86620906 -33123992 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr13 86622574 86622612 -33122286 + AT_rich Low_complexity Low_complexity 1 38 0 198 357 97 40 chr13 86622815 86623185 -33121713 - L2 LINE L2 -1141 2173 1783 227 140 20 0 chr13 86624473 86624523 -33120375 + CT-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr13 86625494 86625515 -33119383 + AT_rich Low_complexity Low_complexity 1 21 0 579 330 106 3 chr13 86625711 86626014 -33118884 + LTR33 LTR ERVL 5 338 -183 2275 110 3 3 chr13 86626485 86626820 -33118078 + THE1A LTR MaLR 1 335 -20 234 0 0 0 chr13 86626820 86626846 -33118052 + (A)n Simple_repeat Simple_repeat 1 26 0 353 319 19 32 chr13 86627313 86627470 -33117428 - L2 LINE L2 -328 2985 2831 195 42 0 0 chr13 86627728 86627752 -33117146 + (GA)n Simple_repeat Simple_repeat 1 24 0 1955 230 91 8 chr13 86627887 86628391 -33116507 - MER44D DNA MER2_type -4 601 1 933 255 163 29 chr13 86629214 86629661 -33115237 - MLT1H LTR MaLR -3 546 40 23 68 0 0 chr13 86630996 86631040 -33113858 + AT_rich Low_complexity Low_complexity 1 44 0 1248 236 57 0 chr13 86631255 86631535 -33113363 - MLT1A1 LTR MaLR 0 365 70 21 36 0 0 chr13 86631608 86631636 -33113262 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 86632105 86632145 -33112753 + AT_rich Low_complexity Low_complexity 1 40 0 2370 123 0 3 chr13 86634109 86634467 -33110431 - L1PB1 LINE L1 -4 6147 5791 1875 247 14 0 chr13 86634617 86635103 -33109795 - L1MEc LINE L1 -1569 4646 4154 * 2830 170 37 26 chr13 86635094 86635127 -33109771 + L1PB4 LINE L1 4714 4745 -1411 610 96 0 0 chr13 86635127 86635221 -33109677 + L1PA14 LINE L1 6065 6158 -3 2830 170 37 26 chr13 86635221 86636259 -33108639 + L1PB4 LINE L1 4745 5791 -365 225 178 0 0 chr13 86636259 86636304 -33108594 + (TA)n Simple_repeat Simple_repeat 2 46 0 2149 164 8 5 chr13 86636304 86636683 -33108215 + L1PB4 LINE L1 5776 6155 -1 33 43 0 0 chr13 86636689 86636736 -33108162 + AT_rich Low_complexity Low_complexity 1 47 0 25 75 0 0 chr13 86636803 86636856 -33108042 + AT_rich Low_complexity Low_complexity 1 53 0 1245 257 163 79 chr13 86636926 86637837 -33107061 - L1MC4a LINE L1 -245 7563 6577 299 191 27 36 chr13 86637903 86638013 -33106885 + (TATAA)n Simple_repeat Simple_repeat 1 109 0 * 331 100 53 77 chr13 86637933 86638103 -33106795 + (TA)n Simple_repeat Simple_repeat 2 167 0 222 191 11 22 chr13 86638134 86638223 -33106675 + (TA)n Simple_repeat Simple_repeat 2 89 0 301 266 40 57 chr13 86638223 86638347 -33106551 + L1MC4 LINE L1 6614 6735 -1307 400 227 28 21 chr13 86638349 86638490 -33106408 + (TA)n Simple_repeat Simple_repeat 2 143 0 314 28 0 0 chr13 86639392 86639428 -33105470 + (CA)n Simple_repeat Simple_repeat 2 37 0 672 295 52 37 chr13 86639854 86640389 -33104509 - L1MEc LINE L1 -2576 3639 3097 266 243 0 29 chr13 86640392 86640462 -33104436 + CT-rich Low_complexity Low_complexity 1 68 0 373 295 36 9 chr13 86640463 86640687 -33104211 - L1MEc LINE L1 -3114 3101 2872 23 68 0 0 chr13 86640908 86640952 -33103946 + AT_rich Low_complexity Low_complexity 1 44 0 2301 99 3 0 chr13 86640955 86641258 -33103640 + AluSc SINE Alu 3 306 -3 371 359 88 20 chr13 86641479 86641877 -33103021 - L1MEc LINE L1 -5930 466 42 232 252 36 36 chr13 86641963 86642074 -33102824 - MER113 DNA MER1_type? -405 116 6 213 196 0 0 chr13 86642370 86642416 -33102482 + GA-rich Low_complexity Low_complexity 1 46 0 529 173 21 112 chr13 86642529 86642708 -33102190 - MLT1F LTR MaLR -2 593 396 262 294 0 0 chr13 86643393 86643461 -33101437 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 265 174 0 0 chr13 86643706 86643752 -33101146 - MLT2B1 LTR ERVL 0 520 475 23 97 0 0 chr13 86643752 86643824 -33101074 + AT_rich Low_complexity Low_complexity 1 72 0 1040 256 33 50 chr13 86643824 86644229 -33100669 - MLT2B1 LTR ERVL -59 461 10 2201 111 3 0 chr13 86645086 86645393 -33099505 + AluSc SINE Alu 1 308 -1 823 200 0 0 chr13 86646709 86646877 -33098021 + FRAM SINE Alu 1 168 0 190 341 137 11 chr13 86647389 86647571 -33097327 + L3 LINE CR1 919 1123 -454 276 53 0 0 chr13 86648005 86648043 -33096855 + (CAT)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr13 86648289 86648317 -33096581 + AT_rich Low_complexity Low_complexity 1 28 0 240 167 0 0 chr13 86648348 86648396 -33096502 + (TA)n Simple_repeat Simple_repeat 2 49 0 313 314 43 62 chr13 86648396 86648606 -33096292 - MIR SINE MIR -54 208 3 2201 182 19 7 chr13 86649282 86649706 -33095192 + MSTB1 LTR MaLR 1 429 -3 532 225 9 0 chr13 86649849 86649960 -33094938 + FLAM_C SINE Alu 1 112 -31 37 86 0 0 chr13 86650020 86650113 -33094785 + AT_rich Low_complexity Low_complexity 1 93 0 22 0 0 0 chr13 86652361 86652383 -33092515 + AT_rich Low_complexity Low_complexity 1 22 0 495 282 46 79 chr13 86652730 86653035 -33091863 - LTR16C LTR ERVL -10 481 187 953 247 5 0 chr13 86653796 86653986 -33090912 - MER8 DNA MER2_type 0 239 49 333 210 0 0 chr13 86655073 86655135 -33089763 - MLT1L LTR MaLR -102 513 452 226 255 0 0 chr13 86655330 86655381 -33089517 - MLT1J1 LTR MaLR -305 141 91 433 261 63 75 chr13 86655988 86656256 -33088642 + MLT1G-int LTR MaLR 1100 1364 -7 792 292 23 28 chr13 86656264 86656603 -33088295 + MLT1G LTR MaLR 4 300 -290 945 329 116 62 chr13 86656811 86657027 -33087871 - L2 LINE L2 0 3313 3110 2219 50 0 4 chr13 86657027 86657305 -33087593 + AluY SINE Alu 25 301 -10 945 329 116 62 chr13 86657305 86657891 -33087007 - L2 LINE L2 -203 3110 2557 3815 133 8 0 chr13 86657891 86658494 -33086404 - L1PA15 LINE L1 -6 6159 5552 945 329 116 62 chr13 86658494 86658956 -33085942 - L2 LINE L2 -756 2557 1978 901 276 95 0 chr13 86660294 86660577 -33084321 + MER69 DNA AcHobo 495 804 -422 2128 88 4 0 chr13 86660687 86660960 -33083938 + AluSp SINE Alu 1 274 -39 266 125 0 0 chr13 86660960 86661000 -33083898 + (GA)n Simple_repeat Simple_repeat 2 41 0 305 383 32 13 chr13 86663520 86663674 -33081224 + L2 LINE L2 3116 3272 0 4114 116 100 70 chr13 86663676 86664478 -33080420 - LTR12 LTR ERV1 0 826 1 533 219 78 60 chr13 86664557 86664840 -33080058 - pTR5 LTR ERV1 -1410 1028 741 32 0 0 0 chr13 86667077 86667109 -33077789 + AT_rich Low_complexity Low_complexity 1 32 0 7339 153 33 36 chr13 86667713 86667882 -33077016 - Ricksha DNA DNA -13 3233 3065 2180 110 7 3 chr13 86667882 86668183 -33076715 + AluSp SINE Alu 5 306 -7 7339 153 33 36 chr13 86668183 86669421 -33075477 - Ricksha DNA DNA -181 3065 1830 1637 175 11 3 chr13 86669428 86669714 -33075184 - Ricksha DNA DNA -2958 288 1 282 343 30 0 chr13 86669882 86669981 -33074917 + LTR67 LTR ERVL 90 191 -366 207 69 0 0 chr13 86670552 86670581 -33074317 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr13 86671202 86671244 -33073654 + AT_rich Low_complexity Low_complexity 1 42 0 252 229 41 16 chr13 86671519 86671641 -33073257 + (TA)n Simple_repeat Simple_repeat 2 126 0 1928 117 0 8 chr13 86674032 86674329 -33070569 - AluSc SINE Alu 0 314 20 23 68 0 0 chr13 86674364 86674408 -33070490 + AT_rich Low_complexity Low_complexity 1 44 0 336 91 0 0 chr13 86675740 86675784 -33069114 + Alu SINE Alu 1 44 -256 2445 244 36 1 chr13 86675786 86676503 -33068395 - L1MDa LINE L1 -1001 5539 4798 656 229 60 5 chr13 86676534 86676735 -33068163 - L1MDa LINE L1 -1896 4644 4433 2437 93 0 0 chr13 86676980 86677290 -33067608 + AluY SINE Alu 1 310 -1 201 129 32 65 chr13 86677610 86677672 -33067226 + GA-rich Low_complexity Low_complexity 1 60 0 1350 257 55 33 chr13 86678425 86678974 -33065924 - L1MDa LINE L1 -2127 4413 3853 2102 279 65 11 chr13 86679009 86679774 -33065124 - L1MDa LINE L1 -2748 3792 2947 5796 79 14 9 chr13 86679774 86680550 -33064348 - LTR17 LTR ERV1 0 780 1 2102 279 65 11 chr13 86680550 86680899 -33063999 - L1MDa LINE L1 -3593 2947 2618 3273 255 66 20 chr13 86680925 86680954 -33063944 - L1MDa LINE L1 -4008 2532 2506 207 0 0 0 chr13 86680954 86680977 -33063921 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3273 255 66 20 chr13 86680977 86681563 -33063335 - L1MDa LINE L1 -4034 2506 1949 2210 94 10 3 chr13 86681563 86681862 -33063036 + AluY SINE Alu 1 301 -10 3273 255 66 20 chr13 86681862 86682540 -33062358 - L1MDa LINE L1 -4591 1949 1178 861 191 31 0 chr13 86682546 86682740 -33062158 + L1MA6 LINE L1 6095 6294 -6 1399 170 8 0 chr13 86682914 86683167 -33061731 - L1MA6 LINE L1 -400 5900 5646 582 158 173 8 chr13 86683175 86683302 -33061596 + L1MA3 LINE L1 6156 6303 -2 309 252 77 45 chr13 86683317 86683539 -33061359 - L1ME4a LINE L1 -254 5867 5639 21 82 0 0 chr13 86683746 86683795 -33061103 + AT_rich Low_complexity Low_complexity 1 49 0 1950 100 0 112 chr13 86684142 86684473 -33060425 + AluSc SINE Alu 1 294 -15 180 0 0 0 chr13 86685299 86685319 -33059579 + (A)n Simple_repeat Simple_repeat 1 20 0 2280 85 7 0 chr13 86686689 86686984 -33057914 + AluSx SINE Alu 1 297 -15 520 208 42 17 chr13 86687683 86687803 -33057095 + MER5A DNA MER1_type 5 127 -62 665 181 15 15 chr13 86688171 86688304 -33056594 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr13 86688304 86688332 -33056566 + AT_rich Low_complexity Low_complexity 1 28 0 1830 142 0 24 chr13 86690286 86690581 -33054317 + AluJb SINE Alu 1 288 -24 572 250 89 105 chr13 86691442 86691871 -33053027 - Charlie8 DNA MER1_type -2142 275 11 955 185 48 31 chr13 86692189 86692416 -33052482 - L1MC2 LINE L1 -1 6343 6113 355 256 201 6 chr13 86692646 86692810 -33052088 - MIR SINE MIR -61 201 6 457 213 115 0 chr13 86693146 86693268 -33051630 + L2 LINE L2 3168 3303 -10 207 204 56 19 chr13 86693731 86693785 -33051113 + CT-rich Low_complexity Low_complexity 1 56 0 2937 105 101 30 chr13 86694627 86694677 -33050221 + L1MA3 LINE L1 5723 5768 -537 2566 95 27 5 chr13 86694677 86695044 -33049854 - THE1C LTR MaLR 0 375 1 2937 105 101 30 chr13 86695044 86695536 -33049362 + L1MA3 LINE L1 5768 6304 -1 2171 125 0 10 chr13 86695539 86695674 -33049224 + AluSx SINE Alu 1 136 -176 2423 57 0 13 chr13 86695674 86695972 -33048926 + AluY SINE Alu 1 294 -17 2171 125 0 10 chr13 86695972 86696141 -33048757 + AluSx SINE Alu 136 302 -10 921 185 25 41 chr13 86696147 86696824 -33048074 + L1MA7 LINE L1 5197 5935 -356 250 324 99 28 chr13 86697675 86697999 -33046899 + L2 LINE L2 1729 2075 -1239 185 337 0 35 chr13 86698103 86698189 -33046709 + L2 LINE L2 2268 2350 -964 335 264 149 0 chr13 86698594 86698681 -33046217 - L2 LINE L2 0 3272 3173 685 293 58 29 chr13 86698761 86699003 -33045895 - MIR SINE MIR -1 261 13 201 74 0 0 chr13 86699690 86699717 -33045181 + (A)n Simple_repeat Simple_repeat 1 27 0 2487 236 30 22 chr13 86700073 86700810 -33044088 - L1PA15-16 LINE L1 -4040 3544 2802 * 3257 216 13 0 chr13 86700808 86701414 -33043484 - L1PA15-16 LINE L1 -6967 614 1 40 79 0 0 chr13 86701752 86701841 -33043057 + AT_rich Low_complexity Low_complexity 1 89 0 454 200 12 0 chr13 86702320 86702405 -33042493 - LTR40b LTR ERVL -3 459 374 1312 277 20 17 chr13 86702600 86702954 -33041944 - LTR40a LTR ERVL -131 388 34 32 26 0 0 chr13 86702980 86703019 -33041879 + AT_rich Low_complexity Low_complexity 1 39 0 226 259 0 0 chr13 86703391 86703445 -33041453 + MIR SINE MIR 204 257 -5 503 330 37 25 chr13 86703750 86704077 -33040821 - L1MC4a LINE L1 -1874 5934 5604 3201 171 46 2 chr13 86704176 86704743 -33040155 + LTR26 LTR ERV1 3 594 -9 321 329 20 13 chr13 86704760 86704909 -33039989 - L1MC4a LINE L1 -2305 5503 5354 855 215 88 100 chr13 86705018 86705427 -33039471 - MLT1C LTR MaLR -63 404 1 34 24 0 0 chr13 86705530 86705571 -33039327 + AT_rich Low_complexity Low_complexity 1 41 0 1093 254 181 7 chr13 86705781 86706202 -33038696 + MLT1D LTR MaLR 12 505 0 21 71 0 0 chr13 86706331 86706373 -33038525 + AT_rich Low_complexity Low_complexity 1 42 0 81 95 0 4 chr13 86706389 86706508 -33038390 + AT_rich Low_complexity Low_complexity 1 119 -154 1973 104 0 0 chr13 86706508 86706776 -33038122 + AluSq SINE Alu 32 299 -14 81 95 0 4 chr13 86706776 86706930 -33037968 + AT_rich Low_complexity Low_complexity 119 273 0 347 275 0 5 chr13 86707119 86707229 -33037669 + MLT1J2 LTR MaLR 58 164 -282 1908 208 47 5 chr13 86707762 86708171 -33036727 + MSTB LTR MaLR 1 426 0 4434 224 71 37 chr13 86708174 86709643 -33035255 + MSTB-int LTR MaLR 4 1580 0 1772 245 21 9 chr13 86709643 86710064 -33034834 + MSTB LTR MaLR 1 426 0 1022 343 39 35 chr13 86710776 86711516 -33033382 + HERVL LTR ERVL 1789 2531 -3123 895 267 60 45 chr13 86712022 86712525 -33032373 + L1MEc LINE L1 1682 2132 -4083 32 26 0 0 chr13 86712566 86712605 -33032293 + AT_rich Low_complexity Low_complexity 1 39 0 1117 198 16 58 chr13 86713165 86713408 -33031490 + AluJo SINE Alu 44 276 -36 2127 148 5 27 chr13 86713408 86713780 -33031118 - THE1B LTR MaLR 0 364 1 11420 106 5 4 chr13 86713785 86715358 -33029540 - THE1B-int LTR MaLR -5 1575 1 1005 130 12 12 chr13 86715358 86715520 -33029378 - THE1B LTR MaLR 0 364 203 4744 97 92 48 chr13 86715520 86716311 -33028587 - LTR12 LTR ERV1 0 826 1 924 184 42 56 chr13 86716389 86716677 -33028221 - pTR5 LTR ERV1 -1410 1028 745 3633 50 42 6 chr13 86716726 86717237 -33027661 - L1PA5 LINE L1 0 6154 5658 3011 48 14 0 chr13 86717237 86717859 -33027039 + L1PA5 LINE L1 5012 5639 -515 1219 152 0 0 chr13 86717859 86718043 -33026855 - THE1B LTR MaLR -180 184 1 201 39 0 0 chr13 86718100 86718126 -33026772 + (TG)n Simple_repeat Simple_repeat 1 26 0 437 317 57 63 chr13 86718151 86718432 -33026466 + L1MEc LINE L1 1298 1576 -5145 2167 107 3 0 chr13 86718432 86718722 -33026176 + AluSx SINE Alu 1 291 -21 437 317 57 63 chr13 86718722 86718935 -33025963 + L1MEc LINE L1 1576 1789 -4932 384 266 69 112 chr13 86719040 86719389 -33025509 + LTR68 LTR ERV1 120 453 -287 325 326 124 34 chr13 86719464 86719786 -33025112 + L1MEc LINE L1 1719 2069 -4471 1176 269 100 22 chr13 86719878 86720670 -33024228 + L1MEc LINE L1 2348 3156 -3384 21 36 0 0 chr13 86720953 86720981 -33023917 + AT_rich Low_complexity Low_complexity 1 28 0 2211 126 0 7 chr13 86721025 86721334 -33023564 - AluSg SINE Alu -3 307 1 22 35 0 0 chr13 86721778 86721807 -33023091 + AT_rich Low_complexity Low_complexity 1 29 0 2377 97 0 0 chr13 86722767 86723078 -33021820 - AluSx SINE Alu 0 312 2 22 0 0 0 chr13 86723293 86723315 -33021583 + AT_rich Low_complexity Low_complexity 1 22 0 461 358 54 30 chr13 86723564 86723992 -33020906 + HERVL LTR ERVL 1918 2355 -3299 1666 186 215 165 chr13 86724373 86725344 -33019554 + LTR1B LTR ERV1 1 1020 0 2217 91 44 0 chr13 86726570 86726868 -33018030 + AluY SINE Alu 1 311 0 1622 209 40 40 chr13 86729111 86729351 -33015547 - MLT1A2 LTR MaLR 0 374 132 2003 169 40 35 chr13 86729351 86729776 -33015122 - MSTA LTR MaLR 0 428 2 1622 209 40 40 chr13 86729776 86729909 -33014989 - MLT1A2 LTR MaLR -241 133 1 23 33 0 0 chr13 86730897 86730927 -33013971 + AT_rich Low_complexity Low_complexity 1 30 0 309 333 95 7 chr13 86731019 86731187 -33013711 - MIR SINE MIR -51 211 31 1661 163 58 30 chr13 86731402 86731765 -33013133 + THE1C LTR MaLR 3 375 0 1743 239 96 84 chr13 86731930 86732703 -33012195 - LTR1B LTR ERV1 -42 784 3 270 297 42 75 chr13 86733098 86733232 -33011666 - MER5B DNA MER1_type 0 178 59 714 284 121 65 chr13 86733495 86734034 -33010864 + MLT1L LTR MaLR 1 569 -46 237 339 106 16 chr13 86734765 86734954 -33009944 + MIR SINE MIR 46 251 -11 768 248 10 40 chr13 86735316 86735518 -33009380 + MER20 DNA MER1_type 24 219 0 862 210 0 27 chr13 86735524 86735710 -33009188 - L1PA16 LINE L1 -16 6150 5970 26 50 0 0 chr13 86737157 86737197 -33007701 + AT_rich Low_complexity Low_complexity 1 40 0 1756 207 52 42 chr13 86737289 86737787 -33007111 + MLT1D LTR MaLR 3 505 0 2244 109 0 10 chr13 86739542 86739854 -33005044 + AluSc SINE Alu 1 309 0 1138 186 122 49 chr13 86740125 86740414 -33004484 + AluJo SINE Alu 1 308 0 596 243 72 28 chr13 86740578 86740759 -33004139 + MER5A DNA MER1_type 1 189 0 727 301 102 39 chr13 86740900 86741416 -33003482 + ERVL LTR ERVL 2048 2561 -2924 6835 174 47 76 chr13 86741594 86743675 -33001223 - L1MA8 LINE L1 -101 7609 5598 2542 117 100 16 chr13 86743675 86744104 -33000794 + MER4C LTR ERV1 1 465 0 6835 174 47 76 chr13 86744104 86744572 -33000326 - L1MA8 LINE L1 -2112 5598 5118 2108 148 36 20 chr13 86744572 86744930 -32999968 - THE1B LTR MaLR 0 364 1 10001 116 2 1 chr13 86744930 86746323 -32998575 - THE1B-int LTR MaLR 0 1580 186 2033 162 46 14 chr13 86746329 86746680 -32998218 - THE1B LTR MaLR 0 364 3 4640 247 60 33 chr13 86746689 86747173 -32997725 - L1MA8 LINE L1 -2467 5098 4629 2070 142 0 3 chr13 86747173 86747506 -32997392 - AluSg SINE Alu 0 310 1 4640 247 60 33 chr13 86747506 86750020 -32994878 - L1MA8 LINE L1 -2936 4629 2008 2065 248 21 49 chr13 86750036 86750650 -32994248 - L1MA8 LINE L1 -6427 1062 466 352 198 11 11 chr13 86751177 86751268 -32993630 + GA-rich Low_complexity Low_complexity 3 93 0 2205 105 0 13 chr13 86751341 86751647 -32993251 - AluSc SINE Alu 0 309 8 1522 150 0 18 chr13 86752263 86752536 -32992362 - L1PA15 LINE L1 -3 6162 5895 1767 150 7 118 chr13 86752915 86753242 -32991656 - MLT1B LTR MaLR -2 388 119 2453 67 0 25 chr13 86753242 86753556 -32991342 - AluY SINE Alu -5 306 1 1767 150 7 118 chr13 86753556 86753662 -32991236 - MLT1B LTR MaLR -271 119 3 467 193 0 0 chr13 86754376 86754459 -32990439 - L1PB4 LINE L1 -168 5988 5906 22 0 0 0 chr13 86754460 86754482 -32990416 + AT_rich Low_complexity Low_complexity 1 22 0 563 300 31 23 chr13 86755456 86755692 -32989206 + MLT1J2 LTR MaLR 1 244 -202 255 236 14 42 chr13 86755756 86755828 -32989070 + MLT1J2 LTR MaLR 335 404 -46 2486 43 17 0 chr13 86757278 86757577 -32987321 + AluY SINE Alu 1 304 -7 188 289 41 31 chr13 86757672 86757769 -32987129 - MIR SINE MIR -66 142 45 2118 127 0 6 chr13 86757826 86758140 -32986758 + AluSx SINE Alu 1 312 0 372 71 0 0 chr13 86758140 86758196 -32986702 + (TA)n Simple_repeat Simple_repeat 2 57 0 2414 105 57 0 chr13 86759177 86759530 -32985368 - THE1C LTR MaLR -2 373 1 480 300 8 8 chr13 86760394 86760524 -32984374 + MIR SINE MIR 25 154 -108 21 0 0 0 chr13 86760634 86760655 -32984243 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr13 86760785 86760821 -32984077 + AT_rich Low_complexity Low_complexity 1 36 0 506 217 236 48 chr13 86760931 86761245 -32983653 + L2 LINE L2 2941 3313 0 2296 196 40 5 chr13 86762045 86762494 -32982404 - MLT1C LTR MaLR 0 467 3 29 0 0 0 chr13 86763089 86763118 -32981780 + AT_rich Low_complexity Low_complexity 1 29 0 2299 133 5 24 chr13 86763577 86763959 -32980939 + THE1C LTR MaLR 1 375 0 35 24 0 0 chr13 86764351 86764393 -32980505 + AT_rich Low_complexity Low_complexity 1 42 0 195 310 78 35 chr13 86765027 86765143 -32979755 + MIR3 SINE MIR 84 204 -4 401 325 62 49 chr13 86765608 86765851 -32979047 - MIR SINE MIR -6 256 11 22 35 0 0 chr13 86765912 86765941 -32978957 + AT_rich Low_complexity Low_complexity 1 29 0 1542 218 67 47 chr13 86766030 86766525 -32978373 - MLT1D LTR MaLR 0 505 1 375 278 40 16 chr13 86767991 86768117 -32976781 + MER91B DNA MER1_type 1 129 -61 229 286 102 31 chr13 86768130 86768228 -32976670 + MER91B DNA MER1_type 85 189 -1 306 269 6 137 chr13 86768283 86768458 -32976440 + MIR SINE MIR 3 154 -108 180 0 0 0 chr13 86768614 86768634 -32976264 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 538 314 95 19 chr13 86769283 86769547 -32975351 - LTR16A LTR ERVL 0 450 167 257 51 26 0 chr13 86769850 86769889 -32975009 + (TAA)n Simple_repeat Simple_repeat 3 42 0 24 32 0 0 chr13 86770249 86770280 -32974618 + AT_rich Low_complexity Low_complexity 1 31 0 2000 129 52 22 chr13 86770401 86770765 -32974133 + THE1C LTR MaLR 1 375 0 1985 162 40 30 chr13 86770796 86771167 -32973731 + THE1C LTR MaLR 1 375 0 9392 117 49 40 chr13 86771171 86772733 -32972165 + THE1C-int LTR MaLR 5 1580 0 2037 115 67 22 chr13 86772735 86773092 -32971806 + THE1C LTR MaLR 3 375 0 291 71 0 0 chr13 86773968 86774010 -32970888 + (TG)n Simple_repeat Simple_repeat 2 43 0 653 320 60 29 chr13 86774292 86774608 -32970290 + ERVL LTR ERVL 2072 2397 -3367 1043 360 45 40 chr13 86774619 86775691 -32969207 + ERVL LTR ERVL 2950 4026 -1738 1726 116 70 28 chr13 86776479 86776763 -32968135 - AluSg SINE Alu -14 296 1 227 217 17 17 chr13 86777170 86777230 -32967668 + CT-rich Low_complexity Low_complexity 1 60 0 2103 96 7 7 chr13 86777340 86777646 -32967252 - AluSg SINE Alu 0 306 1 693 328 64 25 chr13 86777738 86778064 -32966834 + LTR16C LTR ERVL 74 412 -79 3678 187 38 52 chr13 86778148 86779114 -32965784 - LTR13 LTR ERVK 0 954 2 21 0 0 0 chr13 86779795 86779816 -32965082 + AT_rich Low_complexity Low_complexity 1 21 0 217 176 0 54 chr13 86780278 86780352 -32964546 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 35 41 0 0 chr13 86780497 86780546 -32964352 + AT_rich Low_complexity Low_complexity 1 49 0 249 242 10 20 chr13 86780595 86780694 -32964204 + (TA)n Simple_repeat Simple_repeat 1 98 0 352 250 53 53 chr13 86782244 86782376 -32962522 - L2 LINE L2 0 3313 3182 * 521 306 139 0 chr13 86782365 86782545 -32962353 - L2 LINE L2 -444 2870 2666 188 239 22 0 chr13 86783020 86783066 -32961832 + L2 LINE L2 3226 3272 0 246 379 35 17 chr13 86783082 86783198 -32961700 - L2 LINE L2 -6 3266 3149 478 329 86 9 chr13 86783237 86783447 -32961451 - MIR SINE MIR 0 262 37 180 97 0 0 chr13 86783656 86783687 -32961211 + (A)n Simple_repeat Simple_repeat 1 31 0 211 270 0 40 chr13 86783979 86784053 -32960845 + GA-rich Low_complexity Low_complexity 46 116 0 330 325 45 90 chr13 86784974 86785396 -32959502 - MLT1J LTR MaLR -108 403 1 207 383 28 0 chr13 86785495 86785602 -32959296 - MIR SINE MIR -8 254 145 262 254 28 0 chr13 86785966 86786037 -32958861 - MLT1K LTR MaLR -6 582 510 521 281 30 0 chr13 86786405 86786540 -32958358 + MLT2C1 LTR ERVL 36 174 -223 590 204 8 0 chr13 86786543 86786675 -32958223 + ERVL-C1 LTR ERVL 843 975 -4789 5948 249 46 23 chr13 86786678 86788216 -32956682 + ERVL-C1 LTR ERVL 1843 3415 -2349 816 258 16 10 chr13 86788215 86788409 -32956489 + ERVL-C1 LTR ERVL 3980 4174 -1480 * 4045 260 43 5 chr13 86788399 86789417 -32955481 + ERVL-C1 LTR ERVL 3423 4479 -1285 1047 216 0 0 chr13 86789418 86789608 -32955290 + MER6B DNA MER2_type 21 210 0 4221 221 69 41 chr13 86789608 86790346 -32954552 + ERVL-C1 LTR ERVL 4499 5287 -477 1483 195 10 13 chr13 86790346 86790653 -32954245 - AluJo SINE Alu -6 306 1 4221 221 69 41 chr13 86790653 86791138 -32953760 + ERVL-C1 LTR ERVL 5287 5757 -7 1227 246 18 42 chr13 86791139 86791525 -32953373 + MLT2C1 LTR ERVL 3 379 -18 1689 158 133 41 chr13 86791721 86791967 -32952931 - MSTA LTR MaLR 0 428 131 2155 104 13 0 chr13 86791967 86792265 -32952633 + AluSg SINE Alu 1 302 -8 1689 158 133 41 chr13 86792265 86792410 -32952488 - MSTA LTR MaLR -297 131 1 227 22 109 65 chr13 86792918 86792964 -32951934 - Charlie4 DNA MER1_type -1226 735 688 253 109 36 18 chr13 86793502 86793557 -32951341 + GA-rich Low_complexity Low_complexity 4 59 0 24 0 0 0 chr13 86794433 86794457 -32950441 + AT_rich Low_complexity Low_complexity 1 24 0 498 343 108 19 chr13 86794739 86795101 -32949797 - L2 LINE L2 -431 2883 2490 191 36 36 0 chr13 86796110 86796138 -32948760 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1896 160 0 3 chr13 86796142 86796455 -32948443 - AluSx SINE Alu 0 312 1 225 324 86 68 chr13 86796668 86797122 -32947776 - L2 LINE L2 -1462 1852 1391 2195 116 3 0 chr13 86797463 86797765 -32947133 - AluSx SINE Alu -9 303 1 288 0 0 0 chr13 86798365 86798397 -32946501 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr13 86800240 86800269 -32944629 + AT_rich Low_complexity Low_complexity 1 29 0 219 345 21 55 chr13 86802028 86802173 -32942725 + MIR3 SINE MIR 36 175 -33 550 171 17 8 chr13 86802449 86802566 -32942332 - MER97b DNA MER1_type? -877 176 59 215 361 14 38 chr13 86803083 86803296 -32941602 + L2 LINE L2 1723 1930 -1384 22 35 0 0 chr13 86803760 86803789 -32941109 + AT_rich Low_complexity Low_complexity 1 29 0 2187 93 24 0 chr13 86803793 86804084 -32940814 - AluSq SINE Alu -15 298 1 315 0 0 0 chr13 86804769 86804804 -32940094 + (CA)n Simple_repeat Simple_repeat 2 36 0 349 273 150 44 chr13 86805116 86805457 -32939441 - L1ME4a LINE L1 -234 5887 5511 2507 58 0 3 chr13 86807154 86807463 -32937435 + AluY SINE Alu 1 308 -3 574 285 54 67 chr13 86809296 86809737 -32935161 - MLT1G1 LTR MaLR 0 595 54 622 285 83 0 chr13 86809737 86809930 -32934968 + MER63A DNA MER1_type 1 209 -1 574 285 54 67 chr13 86809930 86809977 -32934921 - MLT1G1 LTR MaLR -541 54 8 2576 28 0 25 chr13 86810108 86810427 -32934471 - AluY SINE Alu 0 311 1 684 302 79 75 chr13 86810883 86811387 -32933511 - L2 LINE L2 -1063 2251 1746 526 348 152 7 chr13 86811388 86811698 -32933200 - L2 LINE L2 -1932 1382 1028 1120 315 53 9 chr13 86811791 86812258 -32932640 + ERVL LTR ERVL 4920 5407 -357 24 32 0 0 chr13 86812421 86812452 -32932446 + AT_rich Low_complexity Low_complexity 1 31 0 1568 308 33 44 chr13 86812568 86813228 -32931670 + MLT2F LTR ERVL 3 655 -8 22 103 0 0 chr13 86813414 86813492 -32931406 + AT_rich Low_complexity Low_complexity 1 78 0 1689 167 0 64 chr13 86813524 86813854 -32931044 + AluJo SINE Alu 2 310 -2 1034 278 89 58 chr13 86814259 86814840 -32930058 + MER21B LTR ERV1 105 818 -113 25 31 0 0 chr13 86815473 86815505 -32929393 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 86816405 86816428 -32928470 + AT_rich Low_complexity Low_complexity 1 23 0 612 317 30 10 chr13 86817258 86817460 -32927438 + MIR SINE MIR 17 222 -40 1621 142 21 68 chr13 86817619 86817944 -32926954 - AluSx SINE Alu -2 310 1 761 169 34 40 chr13 86818115 86818233 -32926665 - L1PA16 LINE L1 0 6166 6048 484 115 26 0 chr13 86818233 86818311 -32926587 + MADE1 DNA Mariner 1 80 0 761 169 34 40 chr13 86818311 86818369 -32926529 - L1PA16 LINE L1 -118 6048 5991 1703 193 91 30 chr13 86818519 86818981 -32925917 + LTR2B LTR ERV1 1 490 0 218 359 90 7 chr13 86819571 86819716 -32925182 + MIR SINE MIR 32 188 -74 353 207 98 0 chr13 86819833 86819915 -32924983 + L1MC4 LINE L1 6614 6703 -1339 373 147 9 37 chr13 86819922 86820031 -32924867 + (TA)n Simple_repeat Simple_repeat 1 106 0 22 0 0 0 chr13 86820378 86820400 -32924498 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr13 86820939 86820981 -32923917 + AT_rich Low_complexity Low_complexity 1 42 0 1757 143 3 65 chr13 86822556 86822878 -32922020 + AluSx SINE Alu 1 302 -10 2204 106 0 0 chr13 86823850 86824143 -32920755 + AluSg SINE Alu 1 293 -17 238 357 62 31 chr13 86824280 86824409 -32920489 - MIR SINE MIR -69 193 61 1241 221 32 19 chr13 86825644 86825960 -32918938 + L1MB7 LINE L1 5849 6168 -16 189 147 0 0 chr13 86826305 86826339 -32918559 + (CAA)n Simple_repeat Simple_repeat 2 35 0 319 206 73 0 chr13 86828252 86828320 -32916578 + FRAM SINE Alu 56 128 -38 27 49 0 0 chr13 86828321 86828362 -32916536 + AT_rich Low_complexity Low_complexity 1 41 0 225 0 0 0 chr13 86828646 86828671 -32916227 + (GA)n Simple_repeat Simple_repeat 1 25 0 669 155 24 42 chr13 86829212 86829380 -32915518 + L1MB1 LINE L1 5256 5420 -748 1509 218 18 0 chr13 86829380 86829709 -32915189 + L1MB1 LINE L1 5823 6163 -5 27 0 0 0 chr13 86830301 86830328 -32914570 + AT_rich Low_complexity Low_complexity 1 27 0 1506 221 0 6 chr13 86831153 86831465 -32913433 - AluJo SINE Alu 0 312 3 272 306 0 9 chr13 86831575 86831721 -32913177 + L1ME4a LINE L1 5816 5958 -204 29 0 0 0 chr13 86831853 86831882 -32913016 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 86832057 86832081 -32912817 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 86832108 86832132 -32912766 + AT_rich Low_complexity Low_complexity 1 24 0 320 261 76 8 chr13 86832159 86832278 -32912620 + L1ME4a LINE L1 5962 6088 -33 21 0 0 0 chr13 86832385 86832406 -32912492 + AT_rich Low_complexity Low_complexity 1 21 0 2372 55 0 0 chr13 86832450 86832741 -32912157 + AluY SINE Alu 1 291 -20 22 0 0 0 chr13 86832866 86832888 -32912010 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr13 86833747 86833771 -32911127 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 610 286 89 0 chr13 86833878 86834046 -32910852 + MER5A DNA MER1_type 2 184 -5 23 0 0 0 chr13 86834296 86834319 -32910579 + AT_rich Low_complexity Low_complexity 1 23 0 189 74 0 0 chr13 86834597 86834624 -32910274 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr13 86835111 86835132 -32909766 + AT_rich Low_complexity Low_complexity 1 21 0 259 311 184 19 chr13 86835344 86835447 -32909451 - L2 LINE L2 -26 3287 3168 551 333 133 66 chr13 86835597 86836876 -32908022 - L2 LINE L2 -341 2973 1609 1412 181 6 66 chr13 86837021 86837353 -32907545 + AluJo SINE Alu 1 312 0 1990 62 4 16 chr13 86838252 86838510 -32906388 - AluY SINE Alu -16 295 41 29 0 0 0 chr13 86838575 86838604 -32906294 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr13 86840654 86840707 -32904191 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr13 86840713 86840735 -32904163 + AT_rich Low_complexity Low_complexity 1 22 0 195 69 0 0 chr13 86842377 86842406 -32902492 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2099 84 7 7 chr13 86842412 86842696 -32902202 - AluSp SINE Alu -29 284 1 422 279 27 0 chr13 86842850 86842961 -32901937 - L2 LINE L2 0 3313 3200 1626 178 0 30 chr13 86844327 86844625 -32900273 + AluJb SINE Alu 1 289 -23 5708 118 13 10 chr13 86844705 86845192 -32899706 + L1PA12 LINE L1 5139 5623 -545 1847 149 70 9 chr13 86845192 86845535 -32899363 - THE1B LTR MaLR 0 364 1 5708 118 13 10 chr13 86845535 86846057 -32898841 + L1PA12 LINE L1 5623 6168 0 417 39 0 0 chr13 86846115 86846166 -32898732 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 336 344 6 11 chr13 86846701 86846881 -32898017 + MLT1L LTR MaLR 424 602 -13 237 263 26 40 chr13 86847002 86847078 -32897820 - MLT1J LTR MaLR -45 466 392 29 0 0 0 chr13 86847736 86847765 -32897133 + AT_rich Low_complexity Low_complexity 1 29 0 187 89 0 44 chr13 86847848 86847893 -32897005 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 840 206 13 22 chr13 86849570 86849798 -32895100 - L1M4 LINE L1 -1078 5068 4843 4642 203 57 3 chr13 86849891 86851082 -32893816 + L1MC2 LINE L1 5074 6331 -13 3436 249 22 1 chr13 86851833 86852551 -32892347 + L1PA13 LINE L1 1 733 -6054 915 282 77 38 chr13 86852642 86853007 -32891891 + L1PA13 LINE L1 878 1256 -5531 3299 186 13 9 chr13 86853012 86853646 -32891252 + L1PA13 LINE L1 1396 2031 -4756 248 282 56 0 chr13 86853830 86853901 -32890997 - MIR SINE MIR -186 76 2 25 0 0 0 chr13 86854013 86854038 -32890860 + AT_rich Low_complexity Low_complexity 1 25 0 180 152 0 0 chr13 86854108 86854141 -32890757 + (TG)n Simple_repeat Simple_repeat 2 34 0 344 296 54 108 chr13 86854856 86855096 -32889802 + L3 LINE CR1 443 669 -908 203 287 58 11 chr13 86855688 86855775 -32889123 + L3 LINE CR1 786 876 -701 279 339 120 33 chr13 86856049 86856291 -32888607 + L3 LINE CR1 1243 1505 -72 13830 149 35 108 chr13 86856860 86860132 -32884766 + L1PA7 LINE L1 9 3038 -3108 14090 102 6 1 chr13 86860132 86862990 -32881908 + L1PA7 LINE L1 3275 6152 -2 13830 149 35 108 chr13 86862990 86863021 -32881877 + L1PA7 LINE L1 3038 3070 -3076 26 64 0 0 chr13 86863701 86863748 -32881150 + AT_rich Low_complexity Low_complexity 1 47 0 2029 143 3 0 chr13 86863806 86864113 -32880785 - AluSx SINE Alu -2 310 3 488 147 95 0 chr13 86865048 86865143 -32879755 - L1MA4A LINE L1 -868 5435 5332 4341 149 48 14 chr13 86865143 86865786 -32879112 + L1MA4A LINE L1 5442 6126 -177 720 218 160 10 chr13 86865786 86865992 -32878906 - MER8 DNA MER2_type 0 239 3 4341 149 48 14 chr13 86865992 86866171 -32878727 + L1MA4A LINE L1 6126 6297 -6 708 231 5 11 chr13 86866181 86866367 -32878531 - L1MA4 LINE L1 0 6300 6116 1984 111 0 0 chr13 86866435 86866724 -32878174 + AluSx SINE Alu 21 309 0 1981 86 0 4 chr13 86867152 86867409 -32877489 - AluSg1 SINE Alu -19 290 35 23 0 0 0 chr13 86867416 86867439 -32877459 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 86867541 86867569 -32877329 + AT_rich Low_complexity Low_complexity 1 28 0 1882 125 35 0 chr13 86867573 86867862 -32877036 + AluSp SINE Alu 1 299 -14 240 226 0 0 chr13 86867932 86867994 -32876904 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 29 0 0 0 chr13 86869150 86869179 -32875719 + AT_rich Low_complexity Low_complexity 1 29 0 754 229 63 0 chr13 86870068 86870243 -32874655 - MER5A DNA MER1_type -2 187 2 1136 220 128 33 chr13 86871859 86872319 -32872579 + L1MB1 LINE L1 2812 3315 -2831 1248 105 17 0 chr13 86872321 86872502 -32872396 + L1PB1 LINE L1 5928 6111 -40 195 100 0 0 chr13 86872502 86872532 -32872366 + (TAA)n Simple_repeat Simple_repeat 2 31 0 645 243 18 18 chr13 86872558 86872727 -32872171 + MLT1A2 LTR MaLR 155 323 -51 4097 226 34 14 chr13 86872738 86873843 -32871055 + L1MB1 LINE L1 3299 4426 -1720 3954 197 42 5 chr13 86873849 86874666 -32870232 + L1MB1 LINE L1 5321 6167 -1 1623 176 34 6 chr13 86874815 86875168 -32869730 - L1MA8 LINE L1 0 6291 5929 1996 131 19 45 chr13 86875313 86875687 -32869211 - THE1B LTR MaLR 0 364 1 343 232 45 54 chr13 86875704 86875816 -32869082 - LTR40a LTR ERVL -1 518 408 1693 136 40 4 chr13 86875845 86876117 -32868781 - AluSx SINE Alu -30 282 1 583 224 15 0 chr13 86876562 86876696 -32868202 + L1ME1 LINE L1 5411 5546 -638 773 286 85 3 chr13 86876715 86876998 -32867900 + L1ME1 LINE L1 5856 6161 -5 219 114 0 0 chr13 86878035 86878070 -32866828 + (CA)n Simple_repeat Simple_repeat 1 35 0 695 216 101 0 chr13 86878259 86878407 -32866491 - AluJo SINE Alu -24 288 126 467 45 15 0 chr13 86878822 86878888 -32866010 + (TG)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr13 86879354 86879375 -32865523 + AT_rich Low_complexity Low_complexity 1 21 0 2084 117 0 0 chr13 86880901 86881219 -32863679 - AluSx SINE Alu 0 318 1 210 134 61 12 chr13 86881327 86881409 -32863489 + (TA)n Simple_repeat Simple_repeat 1 86 0 192 345 23 11 chr13 86881436 86881523 -32863375 - L2 LINE L2 -36 3277 3190 391 361 102 60 chr13 86881869 86882348 -32862550 + L1PBa LINE L1 24 522 -6341 234 196 54 0 chr13 86882451 86882507 -32862391 + L1PBa LINE L1 1548 1606 -5257 325 315 24 75 chr13 86882535 86882827 -32862071 + L1PBb LINE L1 780 1056 -5807 4234 239 112 43 chr13 86882909 86885246 -32859652 + L1PBb LINE L1 1017 3687 -3175 681 256 117 86 chr13 86885348 86886269 -32858629 + HAL1 LINE L1 1514 2463 -44 1827 197 79 11 chr13 86890182 86890445 -32854453 - L1MA9 LINE L1 -239 6073 5765 213 94 0 0 chr13 86890445 86890477 -32854421 + (CA)n Simple_repeat Simple_repeat 2 33 0 1827 197 79 11 chr13 86890477 86890669 -32854229 - L1MA9 LINE L1 -547 5765 5587 27 29 0 0 chr13 86890697 86890731 -32854167 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr13 86891637 86891673 -32853225 + AT_rich Low_complexity Low_complexity 1 36 0 209 87 29 72 chr13 86892077 86892088 -32852810 + (TCTA)n Simple_repeat Simple_repeat 4 14 -55 2490 60 0 0 chr13 86892088 86892388 -32852510 + AluY SINE Alu 1 300 -11 209 87 29 72 chr13 86892388 86892445 -32852453 + (TCTA)n Simple_repeat Simple_repeat 14 69 0 1589 198 43 20 chr13 86892449 86892798 -32852100 - MLT2C1 LTR ERVL -40 357 1 25 31 0 0 chr13 86892971 86893003 -32851895 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr13 86893370 86893393 -32851505 + (TTA)n Simple_repeat Simple_repeat 2 24 0 27 29 0 0 chr13 86893622 86893656 -32851242 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr13 86894138 86894167 -32850731 + AT_rich Low_complexity Low_complexity 1 29 0 1193 185 33 0 chr13 86894657 86894868 -32850030 - AluJb SINE Alu -6 306 89 1417 207 34 141 chr13 86895509 86895949 -32848949 - MLT1E2 LTR MaLR -47 579 228 1933 107 11 0 chr13 86895949 86896219 -32848679 - AluSg SINE Alu -2 308 36 1417 207 34 141 chr13 86896219 86896424 -32848474 - MLT1E2 LTR MaLR -398 228 3 309 51 0 0 chr13 86897896 86897935 -32846963 + (CA)n Simple_repeat Simple_repeat 2 40 0 1846 227 142 24 chr13 86898740 86899479 -32845419 - LTR1B LTR ERV1 0 826 1 194 125 0 25 chr13 86900764 86900804 -32844094 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 705 273 35 31 chr13 86901482 86901709 -32843189 + MIR SINE MIR 22 249 -13 24 77 0 0 chr13 86901961 86902013 -32842885 + AT_rich Low_complexity Low_complexity 1 52 0 315 0 0 0 chr13 86902556 86902591 -32842307 + (CA)n Simple_repeat Simple_repeat 2 36 0 257 247 85 59 chr13 86903189 86903369 -32841529 + L1ME LINE L1 5504 5640 -481 186 189 0 0 chr13 86903369 86903406 -32841492 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 22 70 0 0 chr13 86903944 86903987 -32840911 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 86904119 86904148 -32840750 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 86904273 86904296 -32840602 + AT_rich Low_complexity Low_complexity 1 23 0 1659 235 14 0 chr13 86904342 86904700 -32840198 + MLT1A1 LTR MaLR 1 363 -2 384 118 0 0 chr13 86905339 86905407 -32839491 + (TA)n Simple_repeat Simple_repeat 1 68 0 363 259 106 92 chr13 86905498 86905791 -32839107 - L2 LINE L2 0 3313 3017 629 162 18 72 chr13 86905819 86905986 -32838912 + L1MA9 LINE L1 6022 6179 -133 573 304 12 17 chr13 86905990 86906230 -32838668 - L2 LINE L2 -1201 2113 1875 23 22 0 44 chr13 86906230 86906256 -32838642 + AT_rich Low_complexity Low_complexity 1 26 -17 676 189 47 0 chr13 86906256 86906383 -32838515 + FLAM_C SINE Alu 1 133 0 23 22 0 44 chr13 86906383 86906401 -32838497 + AT_rich Low_complexity Low_complexity 26 43 0 1053 203 0 5 chr13 86906412 86906604 -32838294 + AluJo SINE Alu 12 202 -110 361 242 32 0 chr13 86906615 86906710 -32838188 - AluJb SINE Alu -24 278 181 314 253 0 0 chr13 86906691 86906766 -32838132 + AluJ/FRAM SINE Alu 224 298 -4 * 834 222 0 0 chr13 86906791 86906958 -32837940 + FRAM SINE Alu 1 159 -17 1324 308 155 41 chr13 86906958 86907811 -32837087 - L2 LINE L2 -1450 1864 915 1670 109 21 32 chr13 86907983 86908268 -32836630 + L1MA2 LINE L1 6007 6288 -16 21 0 0 0 chr13 86908289 86908310 -32836588 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 86909439 86909462 -32835436 + AT_rich Low_complexity Low_complexity 1 23 0 246 353 30 8 chr13 86909911 86910044 -32834854 - MIR SINE MIR -71 191 56 2083 93 45 3 chr13 86911099 86911388 -32833510 + AluSp SINE Alu 1 301 -12 40 21 0 0 chr13 86912096 86912143 -32832755 + AT_rich Low_complexity Low_complexity 1 47 0 372 329 21 14 chr13 86912481 86912621 -32832277 + MIR3 SINE MIR 55 195 -13 52 91 0 0 chr13 86913428 86913571 -32831327 + AT_rich Low_complexity Low_complexity 1 143 0 255 358 43 82 chr13 86913995 86914202 -32830696 + MIR3 SINE MIR 1 199 -9 23 0 0 0 chr13 86914306 86914329 -32830569 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr13 86914433 86914453 -32830445 + (A)n Simple_repeat Simple_repeat 1 20 0 60 59 0 22 chr13 86914815 86914950 -32829948 + AT_rich Low_complexity Low_complexity 1 132 0 234 374 53 34 chr13 86915215 86915480 -32829418 + L2 LINE L2 2549 2818 -496 22 35 0 0 chr13 86916263 86916292 -32828606 + AT_rich Low_complexity Low_complexity 1 29 0 1202 221 82 27 chr13 86916570 86917009 -32827889 - MLT1C LTR MaLR -2 465 3 481 225 18 9 chr13 86917436 86917547 -32827351 + MER65A LTR ERV1 1 112 -333 563 105 12 0 chr13 86917558 86917644 -32827254 + AluSg/x SINE Alu 204 290 -19 996 200 10 5 chr13 86917644 86917839 -32827059 + MER65A LTR ERV1 125 320 -125 2101 77 7 0 chr13 86917839 86918112 -32826786 + AluSq SINE Alu 39 313 0 189 0 0 0 chr13 86918119 86918140 -32826758 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 496 193 37 15 chr13 86918140 86918275 -32826623 + MER65A LTR ERV1 308 445 0 1362 218 89 62 chr13 86918282 86918865 -32826033 + MER67C-int LTR ERV1 11 609 -4262 3515 186 77 72 chr13 86919398 86920580 -32824318 + MER67C-int LTR ERV1 915 2493 -8 25 0 0 0 chr13 86920844 86920869 -32824029 + AT_rich Low_complexity Low_complexity 1 25 0 195 272 76 54 chr13 86921046 86921138 -32823760 + L2 LINE L2 3220 3313 0 2340 71 7 0 chr13 86922257 86922566 -32822332 + AluY SINE Alu 1 311 0 248 0 31 0 chr13 86924023 86924055 -32820843 + (TA)n Simple_repeat Simple_repeat 2 34 0 213 94 0 0 chr13 86924884 86924916 -32819982 + (AGGGGG)n Simple_repeat Simple_repeat 6 37 0 1275 270 118 19 chr13 86925780 86926347 -32818551 - MLT1E2 LTR MaLR -3 623 1 32 57 0 0 chr13 86926969 86927022 -32817876 + AT_rich Low_complexity Low_complexity 1 53 0 1248 174 44 63 chr13 86928350 86928697 -32816201 + MER67C LTR ERV1 1 365 -243 582 183 0 44 chr13 86928714 86928851 -32816047 - L1MA4 LINE L1 -9 6291 6161 278 253 126 0 chr13 86928851 86928938 -32815960 - MER67D LTR ERV1 -32 482 385 1594 217 33 10 chr13 86930195 86930644 -32814254 - MER89 LTR ERV1 0 559 1 206 209 0 0 chr13 86930735 86930778 -32814120 + (CCCA)n Simple_repeat Simple_repeat 3 45 0 228 226 0 0 chr13 86930921 86930983 -32813915 + T-rich Low_complexity Low_complexity 1 62 0 25 31 0 0 chr13 86931111 86931143 -32813755 + AT_rich Low_complexity Low_complexity 1 32 0 2727 181 88 15 chr13 86931556 86932218 -32812680 + MER67C LTR ERV1 1 710 0 362 274 152 90 chr13 86932407 86932459 -32812439 + MLT1K LTR MaLR 137 184 -404 2061 179 33 56 chr13 86932459 86932847 -32812051 + LTR54 LTR ERV1 1 377 -133 2060 53 0 4 chr13 86932847 86933134 -32811764 + AluY SINE Alu 36 321 0 2061 179 33 56 chr13 86933134 86933262 -32811636 + LTR54 LTR ERV1 377 506 -4 362 274 152 90 chr13 86933262 86933519 -32811379 + MLT1K LTR MaLR 184 465 -123 249 337 11 11 chr13 86933664 86933756 -32811142 - L2 LINE L2 -14 3299 3208 9813 178 26 30 chr13 86933762 86935946 -32808952 - L1 LINE L1 -1999 5566 3375 1947 150 6 6 chr13 86935946 86936259 -32808639 - AluSq SINE Alu 0 313 1 9813 178 26 30 chr13 86936259 86936957 -32807941 - L1 LINE L1 -4190 3375 2676 2066 122 0 0 chr13 86936957 86937244 -32807654 + AluSq SINE Alu 14 300 -13 9813 178 26 30 chr13 86937244 86938134 -32806764 - L1 LINE L1 -4889 2676 1805 269 234 52 0 chr13 86938141 86938218 -32806680 - L1 LINE L1 -7467 98 18 28 0 0 0 chr13 86938383 86938411 -32806487 + AT_rich Low_complexity Low_complexity 1 28 0 325 307 151 38 chr13 86938895 86939107 -32805791 + MIR SINE MIR 23 258 -4 17265 21 0 0 chr13 86940087 86942899 -32801999 - L1HS LINE L1 0 6155 3344 * 18450 38 0 0 chr13 86942894 86945176 -32799722 + L1HS LINE L1 1083 3364 -2782 2266 106 0 0 chr13 86945327 86945628 -32799270 + AluSq SINE Alu 1 301 -12 24 96 0 0 chr13 86946866 86946939 -32797959 + AT_rich Low_complexity Low_complexity 1 73 0 29 0 0 0 chr13 86947252 86947281 -32797617 + AT_rich Low_complexity Low_complexity 1 29 0 1642 135 62 45 chr13 86948961 86949249 -32795649 + AluSx SINE Alu 14 306 -6 2328 100 0 0 chr13 86950251 86950561 -32794337 + AluSg SINE Alu 1 310 0 316 266 71 6 chr13 86950641 86950799 -32794099 - MER5B DNA MER1_type -2 176 29 582 177 16 40 chr13 86950806 86950930 -32793968 - L1MC1 LINE L1 -15 6318 6198 586 229 82 122 chr13 86950946 86951452 -32793446 - LTR8 LTR ERV1 -21 678 234 4896 227 63 35 chr13 86951771 86952875 -32792023 - L1MC1 LINE L1 -133 6200 5128 1949 112 19 44 chr13 86952875 86953196 -32791702 - AluSq SINE Alu 0 313 1 4896 227 63 35 chr13 86953196 86953914 -32790984 - L1MC1 LINE L1 -1205 5128 4432 2255 80 3 56 chr13 86953914 86954238 -32790660 - AluSx SINE Alu -5 307 1 4896 227 63 35 chr13 86954238 86954484 -32790414 - L1MC1 LINE L1 -1901 4432 4194 2020 125 10 0 chr13 86954484 86954780 -32790118 + AluSq SINE Alu 1 299 -14 4896 227 63 35 chr13 86954780 86955391 -32789507 - L1MC1 LINE L1 -2139 4194 3451 281 163 0 0 chr13 86955396 86955439 -32789459 - MER5B DNA MER1_type -135 43 1 200 343 157 0 chr13 86955961 86956063 -32788835 - L2 LINE L2 -15 3257 3140 258 256 60 113 chr13 86956238 86956406 -32788492 + LTR33A LTR ERVL 5 163 -360 232 289 26 0 chr13 86956674 86956750 -32788148 - MIR SINE MIR -47 215 138 258 311 90 29 chr13 86956934 86957211 -32787687 - MLT1J2 LTR MaLR -127 323 30 383 310 23 24 chr13 86957264 86957372 -32787526 + MLT1H1 LTR MaLR 5 165 -384 481 61 0 184 chr13 86957372 86957470 -32787428 + MADE1 DNA Mariner 1 80 0 383 310 23 24 chr13 86957470 86957520 -32787378 + MLT1H1 LTR MaLR 165 214 -335 357 206 0 110 chr13 86957998 86958134 -32786764 + MER112 DNA MER1_type 134 254 -6 184 408 8 25 chr13 86958202 86958322 -32786576 - L2 LINE L2 -553 2761 2644 21 0 0 0 chr13 86958635 86958656 -32786242 + AT_rich Low_complexity Low_complexity 1 21 0 201 222 63 0 chr13 86958709 86958772 -32786126 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 22 0 0 0 chr13 86959444 86959466 -32785432 + AT_rich Low_complexity Low_complexity 1 22 0 1865 158 3 0 chr13 86960000 86960298 -32784600 + AluSq SINE Alu 1 299 -14 596 294 26 26 chr13 86960631 86960859 -32784039 - MIR SINE MIR -1 261 34 501 288 86 52 chr13 86961192 86961425 -32783473 + Charlie2 DNA MER1_type 82 322 -2540 763 236 137 50 chr13 86961459 86962013 -32782885 + Charlie2 DNA MER1_type 1859 2460 -402 21 0 0 0 chr13 86962857 86962878 -32782020 + AT_rich Low_complexity Low_complexity 1 21 0 221 378 53 7 chr13 86963473 86963624 -32781274 - MIR SINE MIR -56 206 49 902 236 100 41 chr13 86963802 86964200 -32780698 - L1ME LINE L1 -503 5659 5234 3801 106 33 2 chr13 86964208 86964756 -32780142 - MER61E LTR ERV1 -4 565 1 244 280 30 40 chr13 86964756 86964856 -32780042 + MLT1J1 LTR MaLR 305 403 -43 3015 149 16 2 chr13 86965266 86965764 -32779134 - MER84 LTR ERV1 0 507 3 1434 51 0 0 chr13 86966167 86966342 -32778556 - L1PA8 LINE L1 -9 6163 5989 27 0 0 0 chr13 86966643 86966670 -32778228 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 86967693 86967714 -32777184 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 86967999 86968027 -32776871 + AT_rich Low_complexity Low_complexity 1 28 0 229 343 35 28 chr13 86968159 86968302 -32776596 - MIR SINE MIR -85 177 34 215 245 0 0 chr13 86968896 86968945 -32775953 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 379 358 97 29 chr13 86969182 86969595 -32775303 - L2 LINE L2 -19 3253 2813 3823 145 61 30 chr13 86970085 86970263 -32774635 - MER50 LTR ERV1 -23 711 540 2335 86 0 3 chr13 86970263 86970566 -32774332 + AluSp SINE Alu 1 302 -11 3823 145 61 30 chr13 86970566 86971077 -32773821 - MER50 LTR ERV1 -194 540 1 544 250 40 0 chr13 86971471 86971619 -32773279 - MER58 DNA MER1_type -2155 265 112 2201 113 3 0 chr13 86971810 86972111 -32772787 - AluSq SINE Alu -11 302 1 1561 219 47 29 chr13 86973885 86974370 -32770528 - L1MCa LINE L1 -4936 1490 997 3882 78 16 40 chr13 86974812 86975380 -32769518 + MER41A LTR ERV1 1 554 0 2823 175 63 66 chr13 86975512 86976239 -32768659 + LTR8A LTR ERV1 1 725 -2 4080 156 20 14 chr13 86976846 86977552 -32767346 - MER50 LTR ERV1 -24 710 1 6479 173 36 22 chr13 86977620 86979086 -32765812 - Ricksha DNA DNA -7 3244 1713 626 178 0 25 chr13 86979075 86979193 -32765705 - Ricksha DNA DNA -1931 115 1 * 1626 302 40 24 chr13 86979815 86980946 -32763952 + L1ME3A LINE L1 4978 6135 -35 27 49 0 0 chr13 86980953 86980994 -32763904 + AT_rich Low_complexity Low_complexity 1 41 0 224 225 0 0 chr13 86982456 86982496 -32762402 + T-rich Low_complexity Low_complexity 4 43 0 1964 153 0 13 chr13 86982503 86982816 -32762082 - AluSx SINE Alu -3 309 1 1121 239 118 3 chr13 86983321 86983627 -32761271 + L2 LINE L2 2516 2856 -458 308 257 107 57 chr13 86985591 86985731 -32759167 - MIR SINE MIR -4 258 112 2829 141 8 2 chr13 86985855 86986329 -32758569 - L1PB4 LINE L1 -1 6155 5679 505 293 7 14 chr13 86986342 86986489 -32758409 - FRAM SINE Alu -30 146 1 2118 156 22 0 chr13 86986492 86986896 -32758002 - L1P5 LINE L1 -468 5688 5276 1261 205 86 14 chr13 86988152 86988430 -32756468 - AluJb SINE Alu -4 298 1 207 220 0 0 chr13 86989032 86989082 -32755816 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 394 321 89 71 chr13 86989250 86989849 -32755049 - L2 LINE L2 -4 3309 2660 383 271 199 36 chr13 86990123 86990374 -32754524 + HAL1 LINE L1 996 1287 -1220 23 54 0 0 chr13 86990771 86990808 -32754090 + AT_rich Low_complexity Low_complexity 1 37 0 887 235 173 17 chr13 86991127 86991416 -32753482 - MER2 DNA MER2_type -11 334 1 2307 193 93 54 chr13 86991672 86992340 -32752558 - LTR8A LTR ERV1 0 727 34 364 231 138 0 chr13 86992439 86992569 -32752329 + L1M4 LINE L1 3079 3226 -2920 1390 157 122 70 chr13 86992616 86993042 -32751856 + LTR7 LTR ERV1 1 448 -2 16331 94 12 11 chr13 86993044 86995843 -32749055 + HERVH LTR ERV1 1 2987 -4726 845 138 28 0 chr13 86995839 86995984 -32748914 + HERVH LTR ERV1 3142 3290 -4423 * 3206 131 4 6 chr13 86995974 86996477 -32748421 + HERVH LTR ERV1 3492 3993 -3720 4205 143 22 1 chr13 86996479 86997128 -32747770 + HERVH LTR ERV1 4488 5149 -2564 1331 126 18 14 chr13 86997125 86997347 -32747551 + HERVH LTR ERV1 5597 5819 -1894 * 2442 95 45 13 chr13 86997345 86997725 -32747173 + HERVH LTR ERV1 7322 7713 0 1397 166 107 63 chr13 86997725 86998154 -32746744 + LTR7 LTR ERV1 1 448 -2 2300 96 28 6 chr13 86998211 86998533 -32746365 + LTR8 LTR ERV1 1 329 -362 2290 115 66 25 chr13 87000426 87000790 -32744108 + LTR8 LTR ERV1 313 691 0 262 239 45 0 chr13 87001127 87001215 -32743683 + (TA)n Simple_repeat Simple_repeat 2 93 0 2860 7 0 0 chr13 87001247 87001556 -32743342 + AluYa5 SINE Alu 1 309 -2 186 208 0 0 chr13 87001834 87001882 -32743016 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 2044 138 22 8 chr13 87002326 87002681 -32742217 + MER47A DNA MER2_type 7 366 0 539 229 8 23 chr13 87003122 87003253 -32741645 + FLAM_A SINE Alu 2 130 -3 3342 174 35 10 chr13 87003464 87004154 -32740744 - L1MA7 LINE L1 -1 6290 5584 349 78 0 0 chr13 87004532 87004583 -32740315 - Alu SINE Alu 0 302 252 25 90 0 0 chr13 87004917 87004984 -32739914 + AT_rich Low_complexity Low_complexity 1 67 0 1021 151 102 0 chr13 87004985 87005171 -32739727 - MER2 DNA MER2_type -140 205 1 1942 104 0 0 chr13 87005585 87005870 -32739028 - AluSx SINE Alu 0 306 22 204 158 0 0 chr13 87006324 87006362 -32738536 + (TA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr13 87006972 87006993 -32737905 + AT_rich Low_complexity Low_complexity 1 21 0 1357 152 38 21 chr13 87007089 87007379 -32737519 - L1MA8 LINE L1 -11 6280 5986 1548 81 0 5 chr13 87007400 87007629 -32737269 + AluSg/x SINE Alu 85 312 0 2227 79 3 16 chr13 87008061 87008364 -32736534 + AluSg SINE Alu 5 303 -7 260 337 76 0 chr13 87009065 87009157 -32735741 - L2 LINE L2 -24 3248 3150 28 48 0 0 chr13 87009719 87009761 -32735137 + AT_rich Low_complexity Low_complexity 1 42 0 1469 231 20 71 chr13 87009865 87010375 -32734523 - LTR53 LTR ERVL 0 519 36 51 0 0 0 chr13 87011071 87011122 -32733776 + AT_rich Low_complexity Low_complexity 1 51 0 616 179 149 31 chr13 87012248 87012443 -32732455 + MER106A DNA MER1_type 1 218 -18 21 57 0 0 chr13 87012654 87012689 -32732209 + AT_rich Low_complexity Low_complexity 1 35 0 2782 75 0 0 chr13 87012963 87013324 -32731574 - L1PA6 LINE L1 -4 6150 5790 320 328 0 8 chr13 87015515 87015637 -32729261 + MER94 DNA DNA 14 134 0 296 319 34 103 chr13 87015662 87016098 -32728800 - LTR67 LTR ERVL -42 515 110 263 347 8 8 chr13 87016404 87016525 -32728373 + MER94 DNA DNA 14 134 0 2001 117 7 17 chr13 87016955 87017254 -32727644 - AluSg SINE Alu -14 296 1 22 0 0 0 chr13 87017507 87017529 -32727369 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 87018070 87018092 -32726806 + AT_rich Low_complexity Low_complexity 1 22 0 1886 115 11 0 chr13 87018340 87018601 -32726297 + AluSq SINE Alu 6 269 -44 639 293 62 15 chr13 87018626 87018771 -32726127 + L1ME4a LINE L1 5484 5621 -500 2125 184 47 2 chr13 87018771 87019179 -32725719 + MSTC LTR MaLR 1 426 -2 639 293 62 15 chr13 87019179 87019439 -32725459 + L1ME4a LINE L1 5621 5908 -213 23 68 0 0 chr13 87019794 87019838 -32725060 + AT_rich Low_complexity Low_complexity 1 44 0 227 276 17 0 chr13 87020720 87020778 -32724120 + MIR SINE MIR 86 144 -118 21 36 0 0 chr13 87021525 87021553 -32723345 + AT_rich Low_complexity Low_complexity 1 28 0 267 173 0 0 chr13 87022369 87022421 -32722477 + (CA)n Simple_repeat Simple_repeat 2 53 0 197 62 0 31 chr13 87023216 87023248 -32721650 + (TG)n Simple_repeat Simple_repeat 1 31 0 222 305 17 34 chr13 87024126 87024244 -32720654 + GA-rich Low_complexity Low_complexity 3 118 0 207 139 0 0 chr13 87024671 87024707 -32720191 + (T)n Simple_repeat Simple_repeat 1 36 0 202 224 0 0 chr13 87027380 87027429 -32717469 + (TA)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr13 87027887 87027909 -32716989 + AT_rich Low_complexity Low_complexity 1 22 0 200 267 0 0 chr13 87028376 87028421 -32716477 + C-rich Low_complexity Low_complexity 4 48 0 23 68 0 0 chr13 87029200 87029244 -32715654 + AT_rich Low_complexity Low_complexity 1 44 0 553 272 73 34 chr13 87029739 87029945 -32714953 - MIR SINE MIR 0 262 49 22 0 0 0 chr13 87030319 87030341 -32714557 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 87032380 87032409 -32712489 + AT_rich Low_complexity Low_complexity 1 29 0 22 99 0 0 chr13 87032451 87032522 -32712376 + AT_rich Low_complexity Low_complexity 1 71 0 2376 34 41 3 chr13 87033895 87034188 -32710710 - AluY SINE Alu -7 304 1 5586 70 14 7 chr13 87034438 87035198 -32709700 - MER4E LTR ERV1 0 766 1 501 154 82 18 chr13 87035531 87035641 -32709257 + L1M1 LINE L1 5605 5721 -584 343 332 145 28 chr13 87035641 87035966 -32708932 - L2 LINE L2 -14 3299 2937 400 328 224 21 chr13 87036028 87036547 -32708351 - L2 LINE L2 -466 2848 2225 284 322 96 0 chr13 87037560 87037675 -32707223 + MIR3 SINE MIR 34 159 -49 648 203 62 108 chr13 87037683 87037988 -32706910 - MER58B DNA MER1_type -5 336 46 1509 154 30 33 chr13 87038321 87038620 -32706278 - MER50 LTR ERV1 -430 304 7 345 298 48 43 chr13 87038642 87038850 -32706048 + MIR SINE MIR 53 261 -1 21 0 0 0 chr13 87038889 87038910 -32705988 + AT_rich Low_complexity Low_complexity 1 21 0 439 233 85 8 chr13 87038910 87039039 -32705859 - MIR SINE MIR -77 185 47 823 139 12 24 chr13 87039656 87039822 -32705076 - L1MA7 LINE L1 0 6291 6128 2391 47 0 10 chr13 87039944 87040243 -32704655 + AluY SINE Alu 1 296 -15 22 35 0 0 chr13 87044788 87044817 -32700081 + AT_rich Low_complexity Low_complexity 1 29 0 493 41 14 14 chr13 87045153 87045226 -32699672 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 301 214 146 58 chr13 87045670 87045773 -32699125 - L2 LINE L2 -10 3262 3151 886 166 0 0 chr13 87045830 87045969 -32698929 + FRAM SINE Alu 1 137 -39 1198 80 11 0 chr13 87045992 87046168 -32698730 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 797 166 11 17 chr13 87046169 87046350 -32698548 + GA-rich Low_complexity Low_complexity 1 180 0 215 280 129 76 chr13 87046355 87046487 -32698411 + MER5A DNA MER1_type 40 178 -11 359 275 11 0 chr13 87046960 87047051 -32697847 - Charlie8 DNA MER1_type -2204 213 122 506 254 37 58 chr13 87047051 87047240 -32697658 - MLT1J LTR MaLR 0 511 327 340 282 77 0 chr13 87047362 87047479 -32697419 - MLT1J LTR MaLR -377 134 9 500 333 83 30 chr13 87047782 87048121 -32696777 - L2 LINE L2 -829 2485 2129 2142 113 0 0 chr13 87050276 87050589 -32694309 - AluSx SINE Alu 0 313 1 192 265 24 36 chr13 87050894 87050977 -32693921 - MIR3 SINE MIR -7 201 120 198 245 0 0 chr13 87052243 87052292 -32692606 - L2 LINE L2 -1 3312 3264 28 29 0 0 chr13 87052580 87052615 -32692283 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chr13 87054144 87054187 -32690711 + AT_rich Low_complexity Low_complexity 1 43 0 313 268 0 0 chr13 87055634 87055705 -32689193 + MER81 DNA DNA 8 78 -36 1639 160 94 13 chr13 87055825 87056143 -32688755 + MER2 DNA MER2_type 1 344 0 693 247 0 0 chr13 87056294 87056440 -32688458 - AluJb SINE Alu -20 292 147 24 32 0 0 chr13 87057655 87057686 -32687212 + AT_rich Low_complexity Low_complexity 1 31 0 2273 109 0 3 chr13 87058160 87058471 -32686427 - AluSg SINE Alu 0 310 1 1802 309 86 11 chr13 87058592 87059337 -32685561 + L2 LINE L2 1710 2510 -804 909 100 15 0 chr13 87059337 87059467 -32685431 + MSTB LTR MaLR 1 132 -294 1226 332 29 33 chr13 87059472 87060148 -32684750 + L2 LINE L2 2626 3306 -7 180 306 0 41 chr13 87060200 87060249 -32684649 - L2 LINE L2 -71 3201 3155 4084 145 29 3 chr13 87060552 87061285 -32683613 - L1MA5 LINE L1 -2 6298 5547 232 366 52 22 chr13 87061360 87061443 -32683455 - L2 LINE L2 -4 3309 3219 2267 99 0 34 chr13 87061443 87061766 -32683132 + AluSq SINE Alu 1 312 -1 232 366 52 22 chr13 87061766 87061816 -32683082 - L2 LINE L2 -94 3219 3172 23 0 0 0 chr13 87062008 87062031 -32682867 + AT_rich Low_complexity Low_complexity 1 23 0 379 209 0 0 chr13 87062403 87062470 -32682428 + AluJ/monomer SINE Alu 235 301 -1 233 215 0 25 chr13 87062562 87062641 -32682257 + GA-rich Low_complexity Low_complexity 4 80 0 761 267 92 0 chr13 87063057 87063297 -32681601 + ORSL DNA AcHobo 14 275 0 458 202 10 2 chr13 87063361 87063648 -32681250 + AluJo SINE Alu 3 350 0 265 239 64 49 chr13 87064044 87064125 -32680773 + MER5A DNA MER1_type 81 173 -16 1951 98 98 0 chr13 87064765 87065042 -32679856 - AluSp SINE Alu -9 304 1 271 254 40 48 chr13 87065085 87065211 -32679687 - L1ME4a LINE L1 -50 6071 5947 201 211 0 0 chr13 87065211 87065263 -32679635 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 25 75 0 0 chr13 87065294 87065347 -32679551 + AT_rich Low_complexity Low_complexity 1 53 0 237 282 65 32 chr13 87065410 87065534 -32679364 - L1ME4a LINE L1 -428 5693 5566 329 255 164 15 chr13 87068585 87068711 -32676187 - MIR SINE MIR -62 146 14 5062 196 10 43 chr13 87068998 87069423 -32675475 - L1PB3 LINE L1 -6 6148 5710 255 61 0 0 chr13 87069423 87069456 -32675442 + (TATG)n Simple_repeat Simple_repeat 4 36 0 5062 196 10 43 chr13 87069456 87070975 -32673923 - L1PB3 LINE L1 -444 5710 4259 3391 51 7 7 chr13 87072624 87073072 -32671826 - LTR7 LTR ERV1 -2 448 1 22 0 0 0 chr13 87073093 87073115 -32671783 + AT_rich Low_complexity Low_complexity 1 22 0 385 306 100 79 chr13 87073768 87074248 -32670650 - L2 LINE L2 0 3313 2824 239 233 0 14 chr13 87074849 87074922 -32669976 + CT-rich Low_complexity Low_complexity 1 72 0 225 324 138 33 chr13 87075256 87075466 -32669432 + L2 LINE L2 1909 2140 -1174 180 0 0 0 chr13 87075471 87075491 -32669407 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1950 81 9 81 chr13 87075591 87075912 -32668986 + AluSg SINE Alu 1 298 -12 186 43 0 0 chr13 87076051 87076074 -32668824 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 299 335 106 25 chr13 87076352 87076513 -32668385 + L2 LINE L2 2898 3071 -201 182 343 42 49 chr13 87076596 87076739 -32668159 + MIR SINE MIR 96 237 -25 35 54 0 0 chr13 87076772 87076828 -32668070 + AT_rich Low_complexity Low_complexity 1 56 0 198 337 35 0 chr13 87076846 87076932 -32667966 + L2 LINE L2 3183 3271 -1 203 138 0 0 chr13 87078398 87078427 -32666471 + (TG)n Simple_repeat Simple_repeat 2 30 0 342 263 103 29 chr13 87079100 87079275 -32665623 + L2 LINE L2 3125 3312 -1 7391 177 105 21 chr13 87081489 87083032 -32661866 - MER52A LTR ERV1 0 1755 1 363 246 31 15 chr13 87083528 87083658 -32661240 - MER65A LTR ERV1 -9 436 305 1528 182 14 7 chr13 87083707 87083993 -32660905 - MER65A LTR ERV1 -157 288 1 1936 254 54 23 chr13 87083993 87084395 -32660503 - MER65A-int LTR ERV1 0 4871 4441 1921 120 4 4 chr13 87084395 87084701 -32660197 - AluSc SINE Alu 0 318 13 1936 254 54 23 chr13 87084701 87084908 -32659990 - MER65A-int LTR ERV1 -430 4441 4242 1801 238 102 6 chr13 87084917 87085476 -32659422 - MER65A-int LTR ERV1 -543 4393 3549 1502 224 80 77 chr13 87085471 87086870 -32658028 - MER65A-int LTR ERV1 -1430 5530 2479 * 543 217 24 72 chr13 87086970 87087177 -32657721 - MER4-int LTR ERV1 -2866 3732 3536 532 197 72 102 chr13 87087476 87087783 -32657115 - MER4-int LTR ERV1 -1686 3194 2174 325 204 49 127 chr13 87087809 87088093 -32656805 - MER4-int LTR ERV1 -3393 3205 2944 210 229 0 29 chr13 87088114 87088219 -32656679 + (TA)n Simple_repeat Simple_repeat 2 103 0 4126 240 64 10 chr13 87188231 87189532 -32555366 - L1M4 LINE L1 -1210 4936 3566 4362 153 34 10 chr13 87189541 87190334 -32554564 - L1PB4 LINE L1 -1 6155 5339 771 238 132 7 chr13 87190351 87190624 -32554274 + L1MA6 LINE L1 5994 6300 0 546 261 43 0 chr13 87190629 87190840 -32554058 - L1M4 LINE L1 -2944 3202 2983 29880 95 6 36 chr13 87190944 87192391 -32552507 - L1P LINE L1 -1683 4463 2974 1500 55 0 20 chr13 87192391 87192590 -32552308 - L1PA4 LINE L1 0 6155 5961 29880 95 6 36 chr13 87192590 87195722 -32549176 - L1P LINE L1 -3172 2974 22 6308 146 110 4 chr13 87195722 87196636 -32548262 - Tigger3(Golem) DNA MER2_type -1079 152 -664 2088 124 7 7 chr13 87196636 87196927 -32547971 + AluSx SINE Alu 6 296 -16 6308 146 110 4 chr13 87196927 87197044 -32547854 - Tigger3(Golem) DNA MER2_type -1895 4294966632 119 1720 168 3 24 chr13 87197044 87197342 -32547556 - AluJo SINE Alu -14 298 7 6308 146 110 4 chr13 87197342 87197474 -32547424 - Tigger3(Golem) DNA MER2_type -1111 120 3 288 0 0 0 chr13 87197474 87197506 -32547392 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 87198396 87198419 -32546479 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr13 87198727 87198759 -32546139 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr13 87198812 87198836 -32546062 + AT_rich Low_complexity Low_complexity 1 24 0 2765 10 0 0 chr13 87199001 87199308 -32545590 + AluYa5 SINE Alu 1 307 -4 2288 95 3 0 chr13 87199317 87199613 -32545285 + AluSp SINE Alu 1 297 -16 1864 223 125 22 chr13 87199986 87200538 -32544360 + LTR68 LTR ERV1 5 613 -127 731 150 8 0 chr13 87200895 87201015 -32543883 - FLAM_C SINE Alu -22 121 1 397 302 101 51 chr13 87201799 87202405 -32542493 - L1ME4a LINE L1 -225 5896 5261 291 369 28 17 chr13 87203629 87203805 -32541093 - L2 LINE L2 -309 3004 2827 371 261 28 33 chr13 87203906 87204086 -32540812 - MER20B DNA MER1_type -5 778 600 2260 155 74 68 chr13 87204396 87204912 -32539986 - LTR44 LTR ERV1 0 519 1 348 282 9 36 chr13 87204979 87205089 -32539809 - MER2 DNA MER2_type -238 107 1 291 172 24 26 chr13 87205143 87205239 -32539659 - L1M4 LINE L1 -1103 5043 4943 189 0 0 0 chr13 87205239 87205260 -32539638 + (TG)n Simple_repeat Simple_repeat 2 22 0 303 298 9 18 chr13 87205657 87205771 -32539127 - L1MC4 LINE L1 -1316 6726 6614 823 226 85 0 chr13 87206192 87206391 -32538507 + MER20 DNA MER1_type 4 219 0 298 238 19 29 chr13 87207240 87207345 -32537553 + (TA)n Simple_repeat Simple_repeat 2 105 0 244 342 150 26 chr13 87208400 87208859 -32536039 - L2 LINE L2 -650 2664 2149 814 311 78 56 chr13 87209418 87210045 -32534853 + L2 LINE L2 2022 2662 -652 755 301 119 23 chr13 87210032 87210417 -32534481 + L2 LINE L2 2888 3309 -4 * 188 114 45 0 chr13 87211318 87211362 -32533536 + (TCTCTG)n Simple_repeat Simple_repeat 1 46 0 194 152 0 22 chr13 87211392 87211438 -32533460 + (TA)n Simple_repeat Simple_repeat 2 46 0 26 50 0 0 chr13 87211449 87211489 -32533409 + AT_rich Low_complexity Low_complexity 1 40 0 928 175 136 29 chr13 87211586 87211792 -32533106 + MSTD LTR MaLR 1 228 -168 402 174 8 0 chr13 87211789 87211875 -32533023 + MSTD LTR MaLR 330 395 -1 * 3948 178 47 41 chr13 87212618 87213512 -32531386 - L1MC1 LINE L1 -27 6306 5408 3908 238 17 8 chr13 87213507 87214498 -32530400 + L1PA15 LINE L1 1935 2934 -3212 * 9387 193 12 6 chr13 87214502 87217342 -32527556 + L1PA15 LINE L1 3257 6165 0 1357 293 27 11 chr13 87217515 87218078 -32526820 + L1ME LINE L1 5175 5745 -425 292 194 134 15 chr13 87218122 87218189 -32526709 - MER5A DNA MER1_type -6 183 109 297 289 62 33 chr13 87218900 87219148 -32525750 - L1ME LINE L1 -5712 358 104 25 31 0 0 chr13 87219730 87219762 -32525136 + AT_rich Low_complexity Low_complexity 1 32 0 462 311 78 29 chr13 87220947 87221153 -32523745 - MLT1J2 LTR MaLR -32 418 203 258 262 20 114 chr13 87221985 87222134 -32522764 + MLT1K LTR MaLR 345 479 -109 30 27 0 0 chr13 87223382 87223419 -32521479 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr13 87223755 87223776 -32521122 + (TC)n Simple_repeat Simple_repeat 2 22 0 26 30 0 0 chr13 87224133 87224166 -32520732 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 87224715 87224736 -32520162 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 87225176 87225211 -32519687 + AT_rich Low_complexity Low_complexity 1 35 0 310 329 47 47 chr13 87226211 87226466 -32518432 - L1ME LINE L1 -303 5818 5564 1913 209 55 8 chr13 87227029 87227499 -32517399 - L1MD3 LINE L1 0 7995 7504 25 0 0 0 chr13 87228231 87228256 -32516642 + AT_rich Low_complexity Low_complexity 1 25 0 203 239 15 45 chr13 87228641 87228708 -32516190 + (TTTA)n Simple_repeat Simple_repeat 3 67 0 29 28 0 0 chr13 87228768 87228804 -32516094 + AT_rich Low_complexity Low_complexity 1 36 0 615 276 95 48 chr13 87229485 87230021 -32514877 + L1ME3 LINE L1 5284 5844 -318 721 258 102 39 chr13 87230126 87230382 -32514516 + L1MB8 LINE L1 11 282 -6577 603 333 152 4 chr13 87230385 87230628 -32514270 + L1MB8 LINE L1 317 595 -6264 28 0 0 0 chr13 87230647 87230675 -32514223 + AT_rich Low_complexity Low_complexity 1 28 0 7509 36 0 5 chr13 87230675 87231645 -32513253 - L1PA5 LINE L1 -1 6153 5185 6085 47 1 0 chr13 87231640 87232390 -32512508 + L1P LINE L1 4117 4867 -1279 1687 233 127 63 chr13 87232388 87232971 -32511927 + L1MB8 LINE L1 605 1224 -5635 * 1033 275 49 53 chr13 87232950 87233668 -32511230 + L1MB8 LINE L1 1837 2703 -4435 * 189 0 0 0 chr13 87234047 87234068 -32510830 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 219 36 0 0 chr13 87234067 87234095 -32510803 + (CA)n Simple_repeat Simple_repeat 1 28 0 222 44 44 22 chr13 87234099 87234144 -32510754 + (TA)n Simple_repeat Simple_repeat 1 46 0 3327 262 50 37 chr13 87234152 87235691 -32509207 + L1MB8 LINE L1 2845 4366 -2591 1594 227 7 46 chr13 87235777 87236231 -32508667 + L1MB8 LINE L1 6517 6952 -37 774 282 69 39 chr13 87236231 87236536 -32508362 + MLT1B LTR MaLR 1 314 -76 2121 152 32 63 chr13 87236700 87236857 -32508041 + L1MB7 LINE L1 5315 5475 -709 2121 219 28 0 chr13 87236857 87237349 -32507549 + L1MB7 LINE L1 5669 6176 -8 2121 152 32 63 chr13 87237349 87237381 -32507517 + L1MB7 LINE L1 5475 6176 -8 914 342 64 11 chr13 87237759 87238195 -32506703 + LTR33 LTR ERVL 1 459 -62 5097 173 11 14 chr13 87238650 87239605 -32505293 - L1PA13 LINE L1 -1633 4513 3562 5755 125 3 2 chr13 87239605 87239675 -32505223 + L1PA13 LINE L1 4511 4579 -1584 1630 77 9 5 chr13 87239675 87239895 -32505003 + AluY SINE Alu 80 300 -11 5755 125 3 2 chr13 87239895 87241442 -32503456 + L1PA13 LINE L1 4579 6159 -4 23 68 0 0 chr13 87241725 87241769 -32503129 + AT_rich Low_complexity Low_complexity 1 44 0 237 376 55 0 chr13 87242945 87243054 -32501844 + L2 LINE L2 3199 3313 0 226 308 56 37 chr13 87245115 87245222 -32499676 - L2 LINE L2 0 3313 3205 363 300 86 29 chr13 87245278 87245488 -32499410 - L2 LINE L2 -12 3301 3080 474 300 66 37 chr13 87245822 87246385 -32498513 + L1M4 LINE L1 2558 3136 -3010 681 239 62 17 chr13 87246386 87246562 -32498336 + MIR SINE MIR 24 207 -55 307 298 17 61 chr13 87246779 87246960 -32497938 - L2 LINE L2 -1505 1809 1637 494 297 85 50 chr13 87247323 87247663 -32497235 + L2 LINE L2 2922 3273 -40 528 45 0 0 chr13 87247691 87247758 -32497140 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 4027 85 10 7 chr13 87247864 87248439 -32496459 + L1PA6 LINE L1 4223 4799 -1347 204 149 0 0 chr13 87248439 87248486 -32496412 + (TA)n Simple_repeat Simple_repeat 1 47 0 6893 65 1 8 chr13 87248486 87249854 -32495044 + L1PA6 LINE L1 4793 6154 0 9873 144 45 9 chr13 87249854 87251219 -32493679 + Tigger3(Golem) DNA MER2_type 1264 2704 -325 185 65 32 0 chr13 87251219 87251250 -32493648 + (CTCA)n Simple_repeat Simple_repeat 4 35 0 9873 144 45 9 chr13 87251250 87251588 -32493310 + Tigger3(Golem) DNA MER2_type 2704 3028 -1 246 323 24 8 chr13 87251590 87251714 -32493184 + (CATATA)n Simple_repeat Simple_repeat 2 127 0 180 305 12 61 chr13 87251737 87251819 -32493079 - MIR SINE MIR -111 151 74 26 0 0 0 chr13 87252467 87252493 -32492405 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr13 87252728 87252765 -32492133 + AT_rich Low_complexity Low_complexity 1 37 0 22 80 0 0 chr13 87253079 87253129 -32491769 + AT_rich Low_complexity Low_complexity 1 50 0 432 189 94 0 chr13 87254813 87254919 -32489979 - L1MA8 LINE L1 -4 6287 6172 489 335 48 0 chr13 87255341 87255568 -32489330 - L1ME3A LINE L1 -73 6097 5860 576 308 46 0 chr13 87255648 87255843 -32489055 - L1ME3A LINE L1 -416 5754 5551 529 262 98 72 chr13 87255831 87256301 -32488597 - L1ME3A LINE L1 -1771 4375 3894 * 964 286 130 5 chr13 87256306 87256736 -32488162 - MLT1D LTR MaLR 0 505 22 213 65 0 0 chr13 87256768 87256799 -32488099 + (TC)n Simple_repeat Simple_repeat 2 32 0 753 264 164 4 chr13 87256814 87257045 -32487853 - AluSx SINE Alu -19 293 26 659 296 70 20 chr13 87257090 87257590 -32487308 - L1ME3A LINE L1 -2314 3832 3308 648 323 84 38 chr13 87257776 87258804 -32486094 - L1ME3A LINE L1 -2732 3414 2340 272 365 20 0 chr13 87258826 87258974 -32485924 - MLT1I LTR MaLR -238 171 21 1606 186 3 30 chr13 87259242 87259538 -32485360 + AluJo SINE Alu 1 288 -24 31 0 0 0 chr13 87259541 87259572 -32485326 + AT_rich Low_complexity Low_complexity 1 31 0 336 271 32 26 chr13 87259593 87259748 -32485150 - L1ME1 LINE L1 0 6166 6011 * 1461 258 102 27 chr13 87259739 87261116 -32483782 - L1M4 LINE L1 -2341 3805 2278 22 0 0 0 chr13 87261243 87261265 -32483633 + AT_rich Low_complexity Low_complexity 1 22 0 643 158 25 0 chr13 87261270 87261390 -32483508 + L1MA6 LINE L1 6175 6297 -3 1383 204 89 36 chr13 87261732 87262202 -32482696 - MSTA LTR MaLR -2 453 1 1344 227 167 36 chr13 87262966 87263517 -32481381 + MLT1E2 LTR MaLR 3 625 -1 1950 161 112 3 chr13 87263725 87264091 -32480807 + MSTB LTR MaLR 1 406 -20 8204 191 28 18 chr13 87264108 87265630 -32479268 + MSTB-int LTR MaLR 1 1542 -109 2278 136 34 77 chr13 87265630 87266138 -32478760 - LTR19A LTR ERV1 0 486 1 8204 191 28 18 chr13 87266138 87266244 -32478654 + MSTB-int LTR MaLR 1542 1645 -6 2160 173 64 10 chr13 87266249 87266653 -32478245 + MSTB LTR MaLR 1 426 0 227 188 43 0 chr13 87267649 87267718 -32477180 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 34 42 0 0 chr13 87267720 87267768 -32477130 + AT_rich Low_complexity Low_complexity 1 48 0 1146 255 16 35 chr13 87268330 87268702 -32476196 - MLT1A1 LTR MaLR 0 365 1 880 241 13 42 chr13 87268818 87269054 -32475844 - MLT1A1 LTR MaLR -136 229 1 22 0 0 0 chr13 87269054 87269076 -32475822 + AT_rich Low_complexity Low_complexity 1 22 0 2911 189 88 0 chr13 87269109 87269700 -32475198 + LTR51 LTR ERV1 29 671 0 2573 182 13 79 chr13 87270014 87271340 -32473558 + L1MA4A LINE L1 4847 6042 -261 1540 181 36 54 chr13 87271067 87271454 -32473444 + L1PB4 LINE L1 5776 6155 -1 * 21 0 0 0 chr13 87271510 87271531 -32473367 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr13 87271685 87271722 -32473176 + AT_rich Low_complexity Low_complexity 1 37 0 930 171 19 6 chr13 87271743 87271901 -32472997 + FRAM SINE Alu 1 151 -25 2193 117 0 0 chr13 87271961 87272261 -32472637 - AluSx SINE Alu -11 301 2 33 0 0 0 chr13 87272935 87272968 -32471930 + AT_rich Low_complexity Low_complexity 1 33 0 1967 205 18 10 chr13 87273004 87273395 -32471503 + MSTD LTR MaLR 1 394 -2 400 322 53 37 chr13 87274635 87274880 -32470018 - MLT1J LTR MaLR -156 355 107 1322 258 46 47 chr13 87276286 87276608 -32468290 - L1MEc LINE L1 -2680 3860 3539 2197 99 3 3 chr13 87276608 87276901 -32467997 - AluSq SINE Alu -16 297 5 1322 258 46 47 chr13 87276901 87277092 -32467806 - L1MEc LINE L1 -3001 3539 3349 1856 182 55 0 chr13 87277092 87277438 -32467460 + MER47A DNA MER2_type 1 365 -1 1322 258 46 47 chr13 87277438 87277710 -32467188 - L1MEc LINE L1 -3191 3349 3075 430 263 49 66 chr13 87277710 87278014 -32466884 - L1MEc LINE L1 -3991 2589 2287 708 237 65 11 chr13 87278014 87278200 -32466698 + MER3 DNA MER1_type 2 197 -12 273 274 98 26 chr13 87278069 87278222 -32466676 - MER3 DNA MER1_type -9 200 37 * 340 280 26 26 chr13 87278229 87278422 -32466476 - L1MEc LINE L1 -4351 2370 2178 1873 142 0 10 chr13 87278422 87278711 -32466187 + AluSx SINE Alu 1 286 -26 190 352 11 22 chr13 87278927 87278997 -32465901 - L2 LINE L2 -277 3036 2966 2735 19 0 0 chr13 87278997 87279306 -32465592 + AluYa5 SINE Alu 1 309 -2 190 352 11 22 chr13 87279306 87279326 -32465572 - L2 LINE L2 -347 2966 2947 2176 290 179 29 chr13 87279343 87280585 -32464313 - L2 LINE L2 -338 2976 1549 958 228 111 3 chr13 87282334 87282623 -32462275 - MER5C DNA MER1_type -3 321 2 27 62 0 0 chr13 87283967 87284015 -32460883 + AT_rich Low_complexity Low_complexity 1 48 0 1077 248 108 43 chr13 87285246 87285310 -32459588 + MER66A LTR ERV1 100 158 -320 1107 113 36 16 chr13 87285310 87285504 -32459394 + L1PA13 LINE L1 5964 6161 -2 1077 248 108 43 chr13 87285504 87285902 -32458996 + MER66A LTR ERV1 158 478 0 25 0 0 0 chr13 87285930 87285955 -32458943 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr13 87286114 87286144 -32458754 + AT_rich Low_complexity Low_complexity 1 30 0 437 203 88 88 chr13 87287531 87287713 -32457185 + MER110 LTR ERV1 12 193 -298 22 0 0 0 chr13 87287884 87287906 -32456992 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 87288124 87288152 -32456746 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr13 87289323 87289357 -32455541 + AT_rich Low_complexity Low_complexity 1 34 0 2230 103 0 13 chr13 87289794 87290106 -32454792 + AluSp SINE Alu 1 308 -5 41 0 0 0 chr13 87291099 87291140 -32453758 + AT_rich Low_complexity Low_complexity 1 41 0 314 215 28 3 chr13 87291354 87291492 -32453406 - MER3 DNA MER1_type -78 131 1 1633 183 21 0 chr13 87291694 87291984 -32452914 + MER7A DNA MER2_type 42 335 -11 225 125 0 25 chr13 87292059 87292099 -32452799 + MER34 LTR ERV1 103 141 -401 2154 122 0 0 chr13 87292144 87292439 -32452459 - AluSg SINE Alu -15 295 1 28 29 0 0 chr13 87292823 87292858 -32452040 + AT_rich Low_complexity Low_complexity 1 35 0 562 103 52 0 chr13 87292992 87293089 -32451809 - L1MA5 LINE L1 -3 6297 6196 403 161 49 0 chr13 87293089 87293170 -32451728 + L1MA4 LINE L1 6084 6168 -132 23 33 0 0 chr13 87293249 87293279 -32451619 + AT_rich Low_complexity Low_complexity 1 30 0 720 140 0 0 chr13 87293327 87293434 -32451464 + AluSq/x SINE Alu 1 107 -206 2053 131 0 3 chr13 87293982 87294273 -32450625 + AluSx SINE Alu 1 290 -22 1456 295 85 21 chr13 87295362 87295880 -32449018 - MER68 LTR ERV1 -11 551 1 687 218 21 17 chr13 87296164 87296375 -32448523 + MER33 DNA MER1_type 1 195 -109 2190 155 62 30 chr13 87296375 87296891 -32448007 + MLT2A2 LTR ERVL 1 554 0 703 145 0 8 chr13 87296893 87297024 -32447874 + MER33 DNA MER1_type 234 363 0 1617 279 46 52 chr13 87297039 87297696 -32447202 + MER76 LTR ERV 1 653 -35 1958 208 0 3 chr13 87297728 87298094 -32446804 - MLT1A1 LTR MaLR 0 365 1 350 261 0 0 chr13 87298560 87298652 -32446246 - MLT1E2 LTR MaLR 0 626 535 528 228 67 33 chr13 87298767 87298947 -32445951 - MLT1D LTR MaLR -319 186 1 424 255 269 7 chr13 87298999 87299140 -32445758 + MER5A DNA MER1_type 7 184 -5 1076 264 10 24 chr13 87299989 87300277 -32444621 + MER90 LTR ERV1 9 292 -322 218 346 0 0 chr13 87301075 87301182 -32443716 + (TA)n Simple_repeat Simple_repeat 1 107 0 * 241 250 42 0 chr13 87301114 87301186 -32443712 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 1921 117 43 13 chr13 87301547 87301846 -32443052 - AluSg SINE Alu -2 308 1 3803 323 59 26 chr13 87302385 87303468 -32441430 + HERVL40 LTR ERVL 1489 2668 -2986 1776 112 40 0 chr13 87303468 87303719 -32441179 + AluSx SINE Alu 39 299 -13 3803 323 59 26 chr13 87303719 87304599 -32440299 + HERVL40 LTR ERVL 2668 3517 -2137 1421 295 36 16 chr13 87304633 87305128 -32439770 + LTR40a LTR ERVL 1 505 -14 1977 138 7 0 chr13 87305138 87305420 -32439478 - AluSp SINE Alu -29 284 1 814 239 30 10 chr13 87305841 87306042 -32438856 + HERVL40 LTR ERVL 1035 1239 -4291 1313 286 93 40 chr13 87306167 87306792 -32438106 + MLT2F LTR ERVL 6 663 0 713 326 37 10 chr13 87306858 87307342 -32437556 + L1ME3A LINE L1 3956 4452 -1694 1481 204 49 41 chr13 87307384 87307584 -32437314 - MLT1B LTR MaLR 0 390 184 222 37 0 0 chr13 87307584 87307611 -32437287 + (GA)n Simple_repeat Simple_repeat 2 28 0 1481 204 49 41 chr13 87307611 87307797 -32437101 - MLT1B LTR MaLR -206 184 1 1143 263 33 54 chr13 87307799 87308279 -32436619 + L1ME3A LINE L1 5693 6162 -8 1684 142 80 4 chr13 87308298 87308573 -32436325 + AluSx SINE Alu 1 296 -16 1742 176 3 14 chr13 87310313 87310609 -32434289 + AluJo SINE Alu 3 295 -17 1910 93 3 62 chr13 87310920 87311211 -32433687 + AluY SINE Alu 1 274 -37 188 33 0 33 chr13 87311215 87311245 -32433653 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 4896 117 10 46 chr13 87311373 87312182 -32432716 - LTR17 LTR ERV1 0 780 1 4640 75 23 9 chr13 87312253 87312904 -32431994 - MER4E LTR ERV1 0 766 107 550 213 79 18 chr13 87313036 87313206 -32431692 + MLT1I LTR MaLR 252 409 0 2743 188 118 47 chr13 87314019 87314790 -32430108 + LTR1B LTR ERV1 1 826 0 16697 166 26 38 chr13 87314791 87317917 -32426981 + HUERS-P2 LTR ERV1 2 3088 0 1041 238 17 34 chr13 87317917 87318299 -32426599 + LTR1 LTR ERV1 1 420 -406 205 380 43 0 chr13 87319005 87319097 -32425801 + L2 LINE L2 3184 3279 -34 1644 273 24 18 chr13 87319097 87319595 -32425303 - LTR40a LTR ERVL 0 519 19 208 382 49 0 chr13 87320355 87320457 -32424441 - L2 LINE L2 -11 3261 3155 250 239 9 110 chr13 87320748 87320857 -32424041 + MIR3 SINE MIR 100 197 -11 295 298 92 35 chr13 87322628 87322769 -32422129 - MIR SINE MIR -70 192 44 * 464 274 75 7 chr13 87322761 87322907 -32421991 - L2 LINE L2 -10 3303 3148 612 231 50 28 chr13 87322908 87323090 -32421808 - MLT1A2 LTR MaLR 0 374 189 314 338 19 19 chr13 87324049 87324203 -32420695 + LTR16C LTR ERVL 328 481 -10 327 256 76 58 chr13 87324303 87324475 -32420423 + MER69A DNA AcHobo 1 175 -2 8429 185 31 45 chr13 87324544 87326275 -32418623 - L1M2a LINE L1 -5442 1726 20 433 256 23 0 chr13 87326753 87326882 -32418016 + Looper DNA T2_type 13 144 -1414 440 231 48 20 chr13 87326882 87327029 -32417869 + Looper DNA T2_type 265 415 -1143 575 214 157 5 chr13 87327041 87327251 -32417647 + Looper DNA T2_type 516 757 -801 21 0 0 0 chr13 87327510 87327531 -32417367 + AT_rich Low_complexity Low_complexity 1 21 0 239 293 12 12 chr13 87327918 87328000 -32416898 - MER94 DNA DNA -52 82 1 458 306 122 5 chr13 87330362 87330558 -32414340 + L2 LINE L2 3095 3313 0 21 36 0 0 chr13 87330854 87330882 -32414016 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 87331113 87331134 -32413764 + AT_rich Low_complexity Low_complexity 1 21 0 2239 114 3 0 chr13 87331244 87331541 -32413357 + AluSp SINE Alu 1 298 -15 25 51 0 0 chr13 87331888 87331927 -32412971 + AT_rich Low_complexity Low_complexity 1 39 0 296 295 62 18 chr13 87332609 87332721 -32412177 + L2 LINE L2 3179 3295 -18 2096 126 0 3 chr13 87332721 87333030 -32411868 - AluY SINE Alu -3 308 1 1689 203 5 45 chr13 87333257 87333661 -32411237 - MLT1B LTR MaLR 0 390 3 303 352 36 86 chr13 87333664 87333968 -32410930 - L2 LINE L2 -15 3257 2969 665 304 62 49 chr13 87334342 87334585 -32410313 - MIR SINE MIR -2 260 15 187 277 128 50 chr13 87334699 87334840 -32410058 - L2 LINE L2 -918 2396 2245 324 286 0 29 chr13 87335310 87335415 -32409483 + CT-rich Low_complexity Low_complexity 4 105 0 1824 139 66 41 chr13 87335446 87335812 -32409086 + THE1C LTR MaLR 1 375 0 25 51 0 0 chr13 87337877 87337916 -32406982 + AT_rich Low_complexity Low_complexity 1 39 0 808 274 51 35 chr13 87340000 87340314 -32404584 + MLT1J LTR MaLR 193 511 0 24 32 0 0 chr13 87341427 87341458 -32403440 + AT_rich Low_complexity Low_complexity 1 31 0 38 75 0 0 chr13 87341518 87341598 -32403300 + AT_rich Low_complexity Low_complexity 1 80 0 22 0 0 0 chr13 87342741 87342763 -32402135 + AT_rich Low_complexity Low_complexity 1 22 0 1710 178 10 3 chr13 87342807 87343100 -32401798 + AluJo SINE Alu 1 295 -17 568 108 0 20 chr13 87343306 87343416 -32401482 - L1M4 LINE L1 -500 5678 5573 208 239 0 0 chr13 87343710 87343756 -32401142 + A-rich Low_complexity Low_complexity 4 49 0 212 133 44 0 chr13 87343826 87343871 -32401027 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1745 15 0 0 chr13 87343890 87344092 -32400806 - L1PA2 LINE L1 -3 6152 5951 245 271 57 90 chr13 87344289 87344466 -32400432 + L1MEd LINE L1 298 468 -5651 497 179 0 0 chr13 87344911 87344995 -32399903 + L1MA5 LINE L1 6 89 -7079 * 5805 160 8 8 chr13 87344992 87346339 -32398559 + L1MA5 LINE L1 5916 7259 -62 227 357 35 18 chr13 87346415 87346698 -32398200 + L1MEd LINE L1 940 1227 -4892 234 189 0 84 chr13 87346714 87346809 -32398089 + L1MCa LINE L1 1405 1491 -4935 234 316 163 10 chr13 87347101 87347297 -32397601 + L2 LINE L2 2633 2858 -456 22 94 0 0 chr13 87348687 87348751 -32396147 + AT_rich Low_complexity Low_complexity 1 64 0 27 29 0 0 chr13 87348793 87348827 -32396071 + AT_rich Low_complexity Low_complexity 1 34 0 1824 147 0 11 chr13 87348991 87349277 -32395621 + AluSx SINE Alu 20 302 -10 235 215 69 62 chr13 87349314 87349444 -32395454 + HAL1 LINE L1 2377 2507 0 24 32 0 0 chr13 87349987 87350018 -32394880 + AT_rich Low_complexity Low_complexity 1 31 0 2123 101 3 26 chr13 87350241 87350548 -32394350 + AluSg SINE Alu 1 300 -10 1940 137 6 22 chr13 87350650 87350963 -32393935 + AluSg SINE Alu 1 308 -2 22 56 0 0 chr13 87351395 87351431 -32393467 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr13 87351610 87351640 -32393258 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr13 87351945 87351981 -32392917 + AT_rich Low_complexity Low_complexity 1 36 0 277 299 52 62 chr13 87353131 87353325 -32391573 + L2 LINE L2 2236 2427 -887 195 382 20 10 chr13 87353403 87353505 -32391393 + L2 LINE L2 2573 2675 -639 21 0 0 0 chr13 87353584 87353605 -32391293 + AT_rich Low_complexity Low_complexity 1 21 0 1661 141 26 52 chr13 87353886 87354192 -32390706 + AluSx SINE Alu 1 298 -14 318 333 0 0 chr13 87354192 87354294 -32390604 + L2 LINE L2 3204 3305 -8 226 270 27 81 chr13 87354987 87355098 -32389800 - L2 LINE L2 0 3272 3168 200 268 0 45 chr13 87355288 87355400 -32389498 + (TA)n Simple_repeat Simple_repeat 2 108 0 293 232 42 32 chr13 87355410 87355505 -32389393 - Charlie8 DNA MER1_type -2222 195 100 186 354 10 10 chr13 87355669 87355765 -32389133 - L2 LINE L2 -210 3103 3008 217 318 47 31 chr13 87355857 87355986 -32388912 - L2 LINE L2 -446 2868 2738 437 331 18 70 chr13 87457079 87457351 -32287547 - MER110-int LTR ERV1 -250 4397 4140 3032 262 53 53 chr13 87457520 87458678 -32286220 - MER110-int LTR ERV1 -943 3704 2547 925 263 33 21 chr13 87458801 87459041 -32285857 + MER21B LTR ERV1 43 285 -578 * 2336 156 15 38 chr13 87459031 87459507 -32285391 - LTR60 LTR ERV1 -121 465 1 949 302 60 66 chr13 87459509 87460359 -32284539 - MER110-int LTR ERV1 -2508 2139 1295 26 30 0 0 chr13 87460514 87460547 -32284351 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 87461483 87461504 -32283394 + AT_rich Low_complexity Low_complexity 1 21 0 1762 76 29 118 chr13 87461612 87461815 -32283083 - AluYb8 SINE Alu -23 295 128 2236 0 0 0 chr13 87461815 87462063 -32282835 - L1PA2 LINE L1 -2 6153 5906 1762 76 29 118 chr13 87462063 87462174 -32282724 - AluYb8 SINE Alu -190 128 9 1776 118 14 24 chr13 87462427 87462735 -32282163 - AluSx SINE Alu 0 305 1 495 238 52 23 chr13 87463230 87463484 -32281414 + LTR37B LTR ERV1 208 426 0 2150 135 24 29 chr13 87465026 87465403 -32279495 + THE1C LTR MaLR 1 375 0 1381 212 103 29 chr13 87465762 87466140 -32278758 - LTR52 LTR ERVL -6 415 10 212 313 137 15 chr13 87466231 87466362 -32278536 + MIR SINE MIR 42 188 -74 218 303 146 0 chr13 87467138 87467227 -32277671 + MIR SINE MIR 161 262 0 225 0 0 0 chr13 87468193 87468218 -32276680 + (TATG)n Simple_repeat Simple_repeat 4 28 0 247 113 38 0 chr13 87468218 87468271 -32276627 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1792 240 62 18 chr13 87468284 87468772 -32276126 + LTR40a LTR ERVL 3 511 -8 23 0 0 0 chr13 87469605 87469628 -32275270 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr13 87469909 87469946 -32274952 + AT_rich Low_complexity Low_complexity 1 37 0 268 359 61 52 chr13 87470060 87470291 -32274607 + L2 LINE L2 2995 3227 -45 2437 75 0 7 chr13 87470485 87470792 -32274106 + AluY SINE Alu 1 305 -6 2083 148 20 11 chr13 87471320 87471672 -32273226 + THE1A LTR MaLR 1 355 0 11518 103 4 1 chr13 87471672 87473246 -32271652 + THE1A-int LTR MaLR 1 1580 0 2299 127 6 11 chr13 87473248 87473603 -32271295 + THE1A LTR MaLR 3 355 0 1242 105 6 0 chr13 87473607 87473778 -32271120 - THE1-int LTR MaLR -477 1103 932 1161 308 118 14 chr13 87474513 87474703 -32270195 + MLT1G LTR MaLR 1 170 -420 1423 153 8 0 chr13 87474703 87474957 -32269941 - L1MA4 LINE L1 0 6300 6045 1161 308 118 14 chr13 87474957 87475276 -32269622 + MLT1G LTR MaLR 170 563 -27 32 0 0 0 chr13 87475479 87475511 -32269387 + AT_rich Low_complexity Low_complexity 1 32 0 286 326 37 15 chr13 87476057 87476192 -32268706 + L1MEc LINE L1 131 268 -6128 * 3066 143 21 0 chr13 87476188 87476789 -32268109 + L1P4 LINE L1 5146 5755 -406 599 302 100 26 chr13 87476788 87477129 -32267769 + L1MEc LINE L1 271 636 -5760 * 274 239 0 45 chr13 87477130 87477218 -32267680 + L1MEc LINE L1 773 856 -5540 467 291 166 12 chr13 87477218 87477544 -32267354 + L1ME1 LINE L1 5743 6118 -48 332 233 108 0 chr13 87477467 87477587 -32267311 + L1MA10 LINE L1 6200 6332 -2 * 25 31 0 0 chr13 87477669 87477701 -32267197 + AT_rich Low_complexity Low_complexity 1 32 0 1352 106 14 5 chr13 87479503 87479721 -32265177 - L1PA12 LINE L1 -695 5473 5254 496 97 0 0 chr13 87479724 87479796 -32265102 + L1PA12 LINE L1 5457 5528 -633 1355 130 0 0 chr13 87479797 87479989 -32264909 - AluSg/x SINE Alu -15 297 106 3001 130 59 0 chr13 87480002 87480480 -32264418 + L1PA12 LINE L1 5515 6020 -148 757 172 104 0 chr13 87480506 87480640 -32264258 - HERVL18 LTR ERVL -3136 2911 2764 * 3585 168 3 35 chr13 87480636 87481245 -32263653 + HERVL18 LTR ERVL 2899 3488 -2559 1573 156 127 89 chr13 87481577 87482025 -32262873 + LTR18B LTR ERVL 1 465 -149 21 71 0 0 chr13 87482640 87482682 -32262216 + AT_rich Low_complexity Low_complexity 1 42 0 903 136 0 0 chr13 87482788 87482935 -32261963 + (TA)n Simple_repeat Simple_repeat 2 148 0 2849 205 45 14 chr13 87483160 87484455 -32260443 - L1MA4 LINE L1 -7 7009 5545 5998 141 49 8 chr13 87484466 87485452 -32259446 + L1PBa LINE L1 1 1026 -5837 1807 143 14 0 chr13 87485557 87485837 -32259061 - AluSg SINE Alu -26 284 1 1931 146 0 0 chr13 87485838 87486118 -32258780 - AluSx SINE Alu -10 302 23 9543 143 46 22 chr13 87486118 87488746 -32256152 - L1MA4 LINE L1 -2833 4029 1339 4320 224 52 8 chr13 87488850 87490034 -32254864 + L1MA9 LINE L1 3530 4765 -1381 1863 183 100 33 chr13 87490034 87490493 -32254405 + LTR2B LTR ERV1 1 490 0 5285 181 18 7 chr13 87490493 87490773 -32254125 + L1MA9 LINE L1 4762 5037 -1275 1585 187 17 3 chr13 87490773 87491073 -32253825 + AluJb SINE Alu 1 304 -8 5285 181 18 7 chr13 87491073 87492324 -32252574 + L1MA9 LINE L1 5037 6312 0 430 304 49 16 chr13 87492555 87492739 -32252159 - MIR SINE MIR -41 221 32 30 59 0 0 chr13 87493637 87493688 -32251210 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr13 87493883 87493916 -32250982 + AT_rich Low_complexity Low_complexity 1 33 0 2110 110 7 3 chr13 87494160 87494459 -32250439 - AluSq SINE Alu -13 300 1 337 319 113 29 chr13 87494518 87494722 -32250176 - HAL1 LINE L1 -1045 1462 1242 2463 93 3 6 chr13 87494823 87495178 -32249720 - L1PB1 LINE L1 -7 6144 5791 502 53 13 13 chr13 87495183 87495258 -32249640 + (TA)n Simple_repeat Simple_repeat 2 76 0 1932 99 0 0 chr13 87495301 87495320 -32249578 - L1PB1 LINE L1 -347 5804 5786 201 74 0 0 chr13 87495320 87495347 -32249551 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 1932 99 0 0 chr13 87495347 87495600 -32249298 - L1PB1 LINE L1 -364 5787 5532 241 304 49 29 chr13 87497042 87497144 -32247754 + MER5A DNA MER1_type 9 112 -77 243 0 0 0 chr13 87497800 87497827 -32247071 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2279 94 0 0 chr13 87498488 87498787 -32246111 + AluSg SINE Alu 4 302 -8 2403 80 0 0 chr13 87499020 87499319 -32245579 + AluSg SINE Alu 2 300 -10 27 29 0 0 chr13 87499505 87499539 -32245359 + AT_rich Low_complexity Low_complexity 1 34 0 1226 250 31 34 chr13 87500080 87500436 -32244462 - MLT1B LTR MaLR -5 385 31 574 258 60 6 chr13 87500445 87500612 -32244286 - MLT1B LTR MaLR -214 176 1 539 344 43 4 chr13 87501042 87501272 -32243626 + MIR SINE MIR 6 244 -18 425 323 201 14 chr13 87501454 87501871 -32243027 - L2 LINE L2 -277 3036 2551 459 224 28 0 chr13 87502214 87502228 -32242670 + L1MD3 LINE L1 7647 7659 -336 1123 237 44 75 chr13 87502228 87502747 -32242151 + MLT1D LTR MaLR 3 505 0 459 224 28 0 chr13 87502747 87502857 -32242041 + L1MD3 LINE L1 7659 7986 -9 673 230 93 11 chr13 87504726 87505156 -32239742 - L1 LINE L1 -2756 3390 2915 900 336 89 11 chr13 87505546 87506075 -32238823 - L2 LINE L2 -341 2973 2404 586 239 30 24 chr13 87506127 87506280 -32238618 - MLT1A2 LTR MaLR 0 390 237 1738 239 129 5 chr13 87506280 87506698 -32238200 + MER70A LTR ERVL 3 472 0 841 263 16 5 chr13 87506763 87506953 -32237945 - MLT1A2 LTR MaLR -182 192 1 328 342 198 25 chr13 87506953 87507348 -32237550 - L2 LINE L2 -967 2347 1885 2016 127 3 0 chr13 87507356 87507667 -32237231 + AluSq SINE Alu 1 312 0 24 32 0 0 chr13 87508797 87508828 -32236070 + AT_rich Low_complexity Low_complexity 1 31 0 2395 70 0 0 chr13 87509464 87509763 -32235135 - AluY SINE Alu -12 299 1 1682 183 55 65 chr13 87510358 87510773 -32234125 + MER67D LTR ERV1 18 428 -86 2047 132 33 33 chr13 87510990 87511354 -32233544 + THE1B LTR MaLR 1 364 0 898 160 9 44 chr13 87511564 87511789 -32233109 + MER31-int LTR ERV1 1287 1503 -3433 604 225 71 29 chr13 87511817 87512057 -32232841 + MER31-int LTR ERV1 1666 1915 -3021 1640 270 28 5 chr13 87512079 87512501 -32232397 + MER70B LTR ERVL 4 435 -143 1308 131 0 0 chr13 87512534 87512717 -32232181 - AluSq SINE Alu -127 186 4 775 266 67 50 chr13 87512890 87513450 -32231448 + MER31-int LTR ERV1 1914 4162 -2464 1230 218 37 70 chr13 87513636 87513711 -32231187 + MER31-int LTR ERV1 2627 2703 -2233 2025 115 3 14 chr13 87513711 87514007 -32230891 - AluSq SINE Alu -20 293 1 1230 218 37 70 chr13 87514007 87514386 -32230512 + MER31-int LTR ERV1 2703 3066 -1870 819 249 135 4 chr13 87514474 87514719 -32230179 + MER67D LTR ERV1 231 507 -7 251 245 104 47 chr13 87514809 87514915 -32229983 - MIR SINE MIR -70 192 81 363 287 52 22 chr13 87514916 87515052 -32229846 + MER69A DNA AcHobo 34 173 -4 1526 182 66 19 chr13 87515094 87515413 -32229485 + MER2 DNA MER2_type 12 345 0 355 323 40 8 chr13 87515788 87515912 -32228986 - MIR3 SINE MIR -24 184 57 2311 80 0 10 chr13 87516099 87516398 -32228500 + AluY SINE Alu 1 296 -15 234 368 0 0 chr13 87516777 87516845 -32228053 + L2 LINE L2 3246 3313 0 422 328 117 6 chr13 87516964 87517144 -32227754 - MIR SINE MIR -12 250 51 193 325 86 66 chr13 87517589 87517740 -32227158 + MIR SINE MIR 6 159 -103 1438 173 8 0 chr13 87518178 87518432 -32226466 - L1 LINE L1 -2039 4107 3852 * 3068 221 21 0 chr13 87518430 87519183 -32225715 + L1 LINE L1 3067 3835 -2311 2224 85 3 0 chr13 87521199 87521481 -32223417 - AluSp SINE Alu -30 283 1 25 0 0 0 chr13 87521582 87521607 -32223291 + AT_rich Low_complexity Low_complexity 1 25 0 23 86 0 0 chr13 87521681 87521739 -32223159 + AT_rich Low_complexity Low_complexity 1 58 0 1444 204 22 7 chr13 87522258 87522532 -32222366 + AluJo SINE Alu 1 278 -34 180 0 0 0 chr13 87522535 87522555 -32222343 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1334 140 62 4 chr13 87522582 87522825 -32222073 + L1PA13 LINE L1 5907 6163 0 23 0 0 0 chr13 87522876 87522899 -32221999 + AT_rich Low_complexity Low_complexity 1 23 0 26 74 0 0 chr13 87522985 87523039 -32221859 + AT_rich Low_complexity Low_complexity 1 54 0 2349 83 0 3 chr13 87523294 87523596 -32221302 - AluY SINE Alu -8 303 3 28 0 0 0 chr13 87523840 87523868 -32221030 + AT_rich Low_complexity Low_complexity 1 28 0 1803 113 4 0 chr13 87524199 87524447 -32220451 - AluSq SINE Alu -59 254 6 21 0 0 0 chr13 87524629 87524650 -32220248 + AT_rich Low_complexity Low_complexity 1 21 0 2668 150 31 16 chr13 87525212 87525901 -32218997 + LTR1 LTR ERV1 1 785 0 296 285 103 37 chr13 87525937 87526151 -32218747 - MLT1J1 LTR MaLR -23 423 196 1958 142 20 3 chr13 87526470 87526772 -32218126 - AluSg SINE Alu -3 307 1 4943 174 30 14 chr13 87528428 87529416 -32215482 - L1MA6 LINE L1 -2 6298 5295 30 0 0 0 chr13 87529529 87529559 -32215339 + AT_rich Low_complexity Low_complexity 1 30 0 667 270 93 33 chr13 87529636 87530000 -32214898 + MLT1H1 LTR MaLR 199 555 0 222 191 0 0 chr13 87530012 87530059 -32214839 + (TG)n Simple_repeat Simple_repeat 2 48 0 1130 185 116 11 chr13 87530818 87531094 -32213804 + L1MB3 LINE L1 5601 5905 -278 27 49 0 0 chr13 87531180 87531221 -32213677 + AT_rich Low_complexity Low_complexity 1 41 0 528 175 0 0 chr13 87532242 87532345 -32212553 - FLAM_A SINE Alu 0 142 40 2669 256 11 6 chr13 87534681 87535310 -32209588 + L1M2b LINE L1 1 632 -6577 2272 41 0 0 chr13 87535897 87536164 -32208734 + AluY SINE Alu 39 305 -6 225 202 0 109 chr13 87536450 87536569 -32208329 - L1MC4 LINE L1 -1324 6718 6613 203 290 14 0 chr13 87536573 87536642 -32208256 + (TA)n Simple_repeat Simple_repeat 1 70 0 180 111 0 0 chr13 87537508 87537535 -32207363 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 480 255 64 20 chr13 87537597 87537801 -32207097 + L1MC5 LINE L1 7690 7902 -59 182 325 185 20 chr13 87537854 87538005 -32206893 + L3 LINE CR1 1344 1519 -58 518 345 59 49 chr13 87538264 87538856 -32206042 + L1ME3A LINE L1 71 668 -5451 2345 49 7 0 chr13 87539229 87539515 -32205383 + AluY SINE Alu 1 288 -23 355 311 21 31 chr13 87539540 87539733 -32205165 + L1ME3A LINE L1 1067 1257 -4862 1129 299 147 20 chr13 87540680 87541436 -32203462 + L1ME3A LINE L1 5300 6151 -2 303 310 116 32 chr13 87541584 87541868 -32203030 + L1ME LINE L1 2587 2894 -3235 1383 212 17 13 chr13 87542070 87542372 -32202526 + Tigger1 DNA MER2_type 1 303 -2115 * 2853 160 30 12 chr13 87542355 87542854 -32202044 + Tigger1 DNA MER2_type 1911 2418 0 24 0 0 0 chr13 87542861 87542885 -32202013 + AT_rich Low_complexity Low_complexity 1 24 0 483 344 84 27 chr13 87543012 87543523 -32201375 + L1ME LINE L1 3352 3891 -2238 2217 196 49 130 chr13 87543549 87544505 -32200393 - L1MA8 LINE L1 -17 6274 5396 2628 231 21 16 chr13 87544630 87545305 -32199593 - L1MA8 LINE L1 -762 5384 4707 1490 225 26 0 chr13 87545305 87545652 -32199246 + L1MD3 LINE L1 7640 7995 0 263 324 87 5 chr13 87545716 87545935 -32198963 + L1ME LINE L1 5288 5441 -712 2556 203 58 14 chr13 87546194 87546888 -32198010 + L1M2 LINE L1 1764 2487 -4362 7494 208 35 69 chr13 87546889 87548080 -32196818 + L1M2 LINE L1 3282 4513 -2335 703 188 0 0 chr13 87548080 87548192 -32196706 + AluJb SINE Alu 176 287 -25 7494 208 35 69 chr13 87548192 87548802 -32196096 + L1M2 LINE L1 4513 5101 -1747 237 33 0 0 chr13 87548802 87548832 -32196066 + (CA)n Simple_repeat Simple_repeat 2 31 0 7494 208 35 69 chr13 87548832 87549255 -32195643 + L1M2 LINE L1 5101 5537 -1311 342 0 0 0 chr13 87549255 87549293 -32195605 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3161 117 62 2 chr13 87549293 87549632 -32195266 - L1PB1 LINE L1 -4 6147 5830 198 0 0 0 chr13 87549632 87549654 -32195244 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 366 23 0 0 chr13 87549653 87549696 -32195202 + (GA)n Simple_repeat Simple_repeat 2 44 0 3161 117 62 2 chr13 87549654 87549854 -32195044 - L1PB1 LINE L1 -321 5830 5620 5311 215 28 2 chr13 87549857 87551064 -32193834 - L1 LINE L1 -1378 4768 3530 639 131 8 74 chr13 87551164 87551286 -32193612 + THE1C LTR MaLR 262 375 0 270 0 0 0 chr13 87551585 87551615 -32193283 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr13 87551645 87551673 -32193225 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr13 87552024 87552058 -32192840 + AT_rich Low_complexity Low_complexity 1 34 0 452 312 119 73 chr13 87552484 87553183 -32191715 - HAL1 LINE L1 -840 1667 937 21 0 0 0 chr13 87554378 87554399 -32190499 + AT_rich Low_complexity Low_complexity 1 21 0 541 250 17 0 chr13 87554593 87554709 -32190189 - MIR3 SINE MIR -34 174 57 330 43 0 0 chr13 87554795 87554842 -32190056 - AluY SINE Alu 0 302 256 1518 201 62 24 chr13 87555284 87555657 -32189241 + MLT1B LTR MaLR 2 388 -2 22 94 0 0 chr13 87555668 87555732 -32189166 + AT_rich Low_complexity Low_complexity 1 64 0 8946 162 37 22 chr13 87555842 87556634 -32188264 + Tigger1 DNA MER2_type 2 781 -1637 2356 87 0 3 chr13 87556634 87556933 -32187965 + AluSq SINE Alu 1 298 -15 8946 162 37 22 chr13 87556933 87557874 -32187024 + Tigger1 DNA MER2_type 781 1760 -658 2099 210 100 32 chr13 87557876 87558533 -32186365 - L1MC3 LINE L1 -1140 6645 6031 568 276 87 42 chr13 87559325 87559611 -32185287 - L3 LINE CR1 -910 667 369 919 261 43 14 chr13 87559953 87560229 -32184669 + MLT1B LTR MaLR 8 291 -99 303 85 0 0 chr13 87560257 87560304 -32184594 + (CA)n Simple_repeat Simple_repeat 1 47 0 27 0 0 0 chr13 87560584 87560611 -32184287 + AT_rich Low_complexity Low_complexity 1 27 0 1467 324 97 24 chr13 87562225 87563052 -32181846 + L2 LINE L2 2143 3036 -277 480 214 43 8 chr13 87563059 87563176 -32181722 - L1M4 LINE L1 -3379 2767 2647 1325 48 6 0 chr13 87563208 87563376 -32181522 - L1PA4 LINE L1 -3 6152 5984 294 287 12 162 chr13 87563376 87563710 -32181188 + L2 LINE L2 3030 3313 0 23 86 0 0 chr13 87564075 87564133 -32180765 + AT_rich Low_complexity Low_complexity 1 58 0 342 0 0 0 chr13 87565958 87565996 -32178902 + (CA)n Simple_repeat Simple_repeat 2 39 0 440 270 101 26 chr13 87566533 87566722 -32178176 - L2 LINE L2 0 3313 3111 553 323 47 19 chr13 87566864 87567121 -32177777 - L1ME LINE L1 -304 5817 5546 1005 266 4 12 chr13 87567121 87567362 -32177536 - MER8 DNA MER2_type 0 239 1 553 323 47 19 chr13 87567362 87567466 -32177432 - L1ME LINE L1 -575 5546 5446 1842 151 0 11 chr13 87568806 87569091 -32175807 + AluSx SINE Alu 6 287 -25 552 100 0 0 chr13 87569091 87569171 -32175727 + (TA)n Simple_repeat Simple_repeat 2 81 0 1934 241 65 17 chr13 87569655 87570571 -32174327 + L1MD3 LINE L1 6800 7987 -1 2393 60 0 0 chr13 87570930 87571228 -32173670 - AluY SINE Alu -12 299 2 22 35 0 0 chr13 87571852 87571881 -32173017 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr13 87572197 87572233 -32172665 + (TA)n Simple_repeat Simple_repeat 1 36 0 2105 133 0 0 chr13 87572693 87572993 -32171905 + AluSx SINE Alu 1 300 -12 314 348 0 0 chr13 87574070 87574182 -32170716 + L3 LINE CR1 1159 1270 -307 2110 101 10 0 chr13 87574263 87574559 -32170339 + AluSx SINE Alu 1 299 -13 461 304 41 26 chr13 87574706 87574900 -32169998 - MLT1I LTR MaLR -209 200 4 278 302 74 101 chr13 87575445 87575703 -32169195 + MIR SINE MIR 12 262 0 21 0 0 0 chr13 87575969 87575990 -32168908 + AT_rich Low_complexity Low_complexity 1 21 0 972 190 144 4 chr13 87576261 87576524 -32168374 - L1MA9 LINE L1 -3 6309 6010 * 2021 145 20 0 chr13 87576519 87576894 -32168004 + L1M2 LINE L1 5221 5602 -710 37 0 0 0 chr13 87576959 87576996 -32167902 + AT_rich Low_complexity Low_complexity 1 37 0 2180 118 0 0 chr13 87579057 87579361 -32165537 - AluSx SINE Alu -8 304 1 1198 165 5 0 chr13 87579533 87579727 -32165171 - MSTB1 LTR MaLR 0 432 238 180 77 0 0 chr13 87581238 87581264 -32163634 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1633 147 3 44 chr13 87582033 87582326 -32162572 + AluSg SINE Alu 1 281 -29 39 22 0 0 chr13 87583074 87583120 -32161778 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr13 87583696 87583717 -32161181 + AT_rich Low_complexity Low_complexity 1 21 0 206 95 24 0 chr13 87583753 87583795 -32161103 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 446 319 28 14 chr13 87583976 87584120 -32160778 - MER5A DNA MER1_type -1 188 43 23 0 0 0 chr13 87584191 87584214 -32160684 + AT_rich Low_complexity Low_complexity 1 23 0 420 288 33 39 chr13 87584242 87584395 -32160503 - MIR SINE MIR 0 262 111 258 279 59 0 chr13 87584734 87584802 -32160096 - LTR16B LTR ERVL -5 459 388 1766 111 50 25 chr13 87584802 87585081 -32159817 + AluSc SINE Alu 1 286 -23 180 0 0 0 chr13 87585081 87585101 -32159797 + (TA)n Simple_repeat Simple_repeat 2 21 0 32 26 0 0 chr13 87585101 87585140 -32159758 + AT_rich Low_complexity Low_complexity 1 39 0 789 316 69 15 chr13 87585185 87585520 -32159378 - LTR16B LTR ERVL -109 355 3 23 0 0 0 chr13 87585542 87585565 -32159333 + AT_rich Low_complexity Low_complexity 1 23 0 4958 219 36 13 chr13 87585921 87587180 -32157718 - L1MA9 LINE L1 -799 5347 4059 3240 164 58 23 chr13 87587180 87587868 -32157030 + L1MA9 LINE L1 5338 6049 -263 234 366 37 0 chr13 87589556 87589638 -32155260 + MIR3 SINE MIR 83 167 -41 660 144 96 0 chr13 87590198 87590323 -32154575 + AluSg/x SINE Alu 176 312 0 1846 92 0 8 chr13 87590800 87591039 -32153859 - AluSp SINE Alu -27 286 50 23 0 0 0 chr13 87592085 87592108 -32152790 + AT_rich Low_complexity Low_complexity 1 23 0 744 159 38 13 chr13 87592264 87592421 -32152477 + L1MB1 LINE L1 6008 6168 0 377 253 143 11 chr13 87592520 87592702 -32152196 + L1ME3A LINE L1 5963 6168 -2 211 325 102 25 chr13 87592931 87593088 -32151810 - L2 LINE L2 -212 3060 2892 26 30 0 0 chr13 87593873 87593906 -32150992 + AT_rich Low_complexity Low_complexity 1 33 0 297 212 15 0 chr13 87593925 87593991 -32150907 + MLT1I LTR MaLR 324 390 -19 6214 186 14 16 chr13 87594076 87596341 -32148557 - L1PB3 LINE L1 -1 6869 4532 4904 289 49 21 chr13 87596347 87598618 -32146280 - L1PB3 LINE L1 -3777 3085 1488 3002 152 21 97 chr13 87598618 87599363 -32145535 + LTR8 LTR ERV1 3 691 0 4904 289 49 21 chr13 87599363 87600892 -32144006 - L1PB3 LINE L1 -5374 1488 3 203 133 0 44 chr13 87601472 87601517 -32143381 + (TAAAAA)n Simple_repeat Simple_repeat 3 45 0 197 56 0 56 chr13 87601836 87601872 -32143026 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2122 139 5 24 chr13 87601875 87602249 -32142649 - L1PB1 LINE L1 -1 6866 6500 261 111 26 69 chr13 87602250 87602458 -32142440 + (TA)n Simple_repeat Simple_repeat 1 199 0 14812 200 37 13 chr13 87602458 87608673 -32136225 - L1PB1 LINE L1 -350 6517 6 39 68 0 0 chr13 87608809 87608883 -32136015 + AT_rich Low_complexity Low_complexity 1 74 0 348 284 254 8 chr13 87609498 87609632 -32135266 + MER5A DNA MER1_type 10 176 -13 192 77 0 0 chr13 87609642 87609668 -32135230 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 379 224 184 26 chr13 87611098 87611250 -32133648 - MLT1J LTR MaLR -247 264 89 22 35 0 0 chr13 87611303 87611332 -32133566 + AT_rich Low_complexity Low_complexity 1 29 0 258 257 55 18 chr13 87611529 87611638 -32133260 + L2 LINE L2 1938 2050 -1264 442 31 31 0 chr13 87612530 87612594 -32132304 + (CA)n Simple_repeat Simple_repeat 1 66 0 2320 88 0 3 chr13 87613712 87614007 -32130891 + AluSp SINE Alu 1 294 -19 2513 116 6 3 chr13 87614046 87614409 -32130489 - THE1B LTR MaLR 0 364 1 189 0 0 0 chr13 87615244 87615265 -32129633 + (TTCTCC)n Simple_repeat Simple_repeat 3 23 0 1820 136 3 37 chr13 87615265 87615560 -32129338 - AluSx SINE Alu -27 285 1 1766 234 6 102 chr13 87615643 87615939 -32128959 + MLT2B3 LTR ERVL 25 249 -305 2543 55 0 0 chr13 87615939 87616249 -32128649 - AluY SINE Alu -1 310 1 1766 234 6 102 chr13 87616249 87616481 -32128417 + MLT2B3 LTR ERVL 249 502 -52 213 360 169 6 chr13 87617774 87617952 -32126946 + MIR SINE MIR 51 257 -5 231 343 102 0 chr13 87618737 87618874 -32126024 + L2 LINE L2 2143 2293 -1021 7489 195 24 59 chr13 87618988 87620181 -32124717 + L1MA9 LINE L1 3459 4693 -1619 1469 165 109 4 chr13 87620181 87620448 -32124450 + AluSx SINE Alu 3 297 -15 7489 195 24 59 chr13 87620448 87622206 -32122692 + L1MA9 LINE L1 4693 6312 0 487 110 0 22 chr13 87622964 87623055 -32121843 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 261 387 34 8 chr13 87623109 87623228 -32121670 - MIR SINE MIR -140 122 1 303 328 97 5 chr13 87623428 87623614 -32121284 - MIR SINE MIR -12 250 48 200 368 46 11 chr13 87623832 87623919 -32120979 - MIR SINE MIR -150 112 23 22 0 0 0 chr13 87623951 87623973 -32120925 + AT_rich Low_complexity Low_complexity 1 22 0 5210 148 12 4 chr13 87624292 87625191 -32119707 + L1MC1 LINE L1 5428 6333 0 32 43 0 0 chr13 87625637 87625683 -32119215 + AT_rich Low_complexity Low_complexity 1 46 0 2150 201 97 60 chr13 87625797 87626460 -32118438 + L1MB3 LINE L1 5 691 -5693 21 36 0 0 chr13 87626460 87626488 -32118410 + AT_rich Low_complexity Low_complexity 1 28 0 743 188 28 17 chr13 87626588 87626764 -32118134 + L1MB3 LINE L1 722 899 -5485 * 12582 92 8 10 chr13 87626762 87628586 -32116312 - L1PA7 LINE L1 -799 5347 3528 6094 54 10 0 chr13 87628586 87629367 -32115531 + L1PA7 LINE L1 5365 6154 0 569 190 25 8 chr13 87629368 87629489 -32115409 + L1MB3 LINE L1 886 1008 -5376 * 1256 250 111 22 chr13 87629479 87630103 -32114795 + L1MB3 LINE L1 2911 3589 -2793 * 3862 205 47 28 chr13 87630093 87631227 -32113671 + L1MB3 LINE L1 5267 6415 -4 381 148 0 0 chr13 87631579 87631660 -32113238 + (TC)n Simple_repeat Simple_repeat 2 82 0 1519 232 43 117 chr13 87631816 87632468 -32112430 + MER77 LTR ERV1 2 605 0 21 0 0 0 chr13 87633636 87633657 -32111241 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr13 87634067 87634118 -32110780 + AT_rich Low_complexity Low_complexity 1 51 0 245 168 42 21 chr13 87634755 87634850 -32110048 + (TA)n Simple_repeat Simple_repeat 1 97 0 248 104 21 99 chr13 87634856 87635048 -32109850 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 26 0 0 0 chr13 87635050 87635076 -32109822 + AT_rich Low_complexity Low_complexity 1 26 0 335 40 0 20 chr13 87635594 87635644 -32109254 + (TG)n Simple_repeat Simple_repeat 2 50 0 26 0 0 0 chr13 87636276 87636302 -32108596 + AT_rich Low_complexity Low_complexity 1 26 0 2125 100 0 7 chr13 87637141 87637431 -32107467 + AluSg1 SINE Alu 14 301 -8 618 154 96 0 chr13 87637435 87637591 -32107307 + L1MA4A LINE L1 6128 6298 -5 255 61 0 0 chr13 87637654 87637687 -32107211 - Tigger2a DNA MER2_type 0 434 402 1301 150 51 31 chr13 87637693 87637947 -32106951 - Tigger2a DNA MER2_type -175 259 1 252 77 0 0 chr13 87638006 87638045 -32106853 + (TG)n Simple_repeat Simple_repeat 2 40 0 1482 178 3 63 chr13 87638045 87638348 -32106550 - AluJo SINE Alu -27 285 1 1104 230 31 93 chr13 87638657 87639044 -32105854 - MLT1A2 LTR MaLR -11 363 1 721 315 126 31 chr13 87639243 87639864 -32105034 - L2 LINE L2 -122 3191 2522 625 82 21 52 chr13 87639866 87639963 -32104935 - MSTA LTR MaLR -1 427 334 5165 165 9 29 chr13 87640134 87641618 -32103280 - L1MA4A LINE L1 -165 6840 5383 2260 104 16 0 chr13 87641618 87641925 -32102973 - AluSp SINE Alu -1 312 1 3991 212 51 20 chr13 87641925 87642426 -32102472 - L1MA4A LINE L1 -2681 4167 3683 1624 174 24 0 chr13 87642426 87642720 -32102178 - AluJb SINE Alu -11 301 1 3991 212 51 20 chr13 87642720 87643319 -32101579 - L1MA4A LINE L1 -3165 3683 3033 3014 223 212 17 chr13 87643316 87644138 -32100760 - L1MA4A LINE L1 -5538 1311 330 * 1379 239 46 11 chr13 87644238 87644611 -32100287 - L1 LINE L1 -985 5365 4980 253 250 14 28 chr13 87644612 87644684 -32100214 - L1 LINE L1 -6208 73 3 797 258 86 0 chr13 87644689 87644898 -32100000 - MER82 DNA MER2_type -425 228 2 21 57 0 0 chr13 87645648 87645683 -32099215 + AT_rich Low_complexity Low_complexity 1 35 0 462 79 0 0 chr13 87645795 87645858 -32099040 + (TA)n Simple_repeat Simple_repeat 1 63 0 448 231 155 14 chr13 87646041 87646224 -32098674 - MLT1G1 LTR MaLR -391 204 1 189 0 0 0 chr13 87646982 87647003 -32097895 + (CA)n Simple_repeat Simple_repeat 2 22 0 6254 241 102 57 chr13 87647126 87648693 -32096205 + L1PA13 LINE L1 1 1497 -5300 1538 179 37 34 chr13 87648693 87648989 -32095909 - AluSx SINE Alu -10 302 6 6254 241 102 57 chr13 87648989 87649093 -32095805 + L1PA13 LINE L1 1497 1595 -5202 2227 75 3 63 chr13 87649093 87649411 -32095487 + AluY SINE Alu 1 299 -12 6254 241 102 57 chr13 87649411 87650159 -32094739 + L1PA13 LINE L1 1595 2598 -4199 1192 201 122 50 chr13 87650443 87650821 -32094077 - MSTA LTR MaLR -23 405 1 580 244 0 0 chr13 87651865 87651980 -32092918 + FLAM_A SINE Alu 1 115 -18 5111 147 17 34 chr13 87652553 87653191 -32091707 - HSMAR2 DNA Mariner -3 1299 679 1400 181 39 78 chr13 87653191 87653383 -32091515 - AluJo SINE Alu -15 297 120 261 0 0 0 chr13 87653383 87653412 -32091486 + (TA)n Simple_repeat Simple_repeat 2 30 0 1400 181 39 78 chr13 87653412 87653528 -32091370 - AluJo SINE Alu -192 120 1 5111 147 17 34 chr13 87653528 87653783 -32091115 - HSMAR2 DNA Mariner -623 679 421 1296 210 85 20 chr13 87653783 87654135 -32090763 - THE1C LTR MaLR 0 375 1 2158 152 41 17 chr13 87654135 87654307 -32090591 - HSMAR2 DNA Mariner -877 425 259 1944 165 24 27 chr13 87654307 87654683 -32090215 - THE1C LTR MaLR 0 375 1 2158 152 41 17 chr13 87654683 87654924 -32089974 - HSMAR2 DNA Mariner -1043 259 2 21 36 0 0 chr13 87656675 87656703 -32088195 + AT_rich Low_complexity Low_complexity 1 28 0 4658 130 15 1 chr13 87657809 87658540 -32086358 - L1PA14 LINE L1 -1 6160 5420 2102 87 10 33 chr13 87658540 87658839 -32086059 - AluSx SINE Alu -20 292 1 1227 120 0 0 chr13 87658891 87659058 -32085840 - AluSg SINE Alu -143 167 1 6309 186 12 8 chr13 87659059 87660420 -32084478 - L1PA14 LINE L1 -735 5426 4064 3208 201 63 32 chr13 87660417 87661208 -32083690 + L1PA14 LINE L1 3268 4083 -2063 * 23 33 0 0 chr13 87661426 87661456 -32083442 + AT_rich Low_complexity Low_complexity 1 30 0 2236 107 13 0 chr13 87663227 87663536 -32081362 + AluSq SINE Alu 1 313 0 2783 118 5 5 chr13 87663806 87664246 -32080652 - L1PB1 LINE L1 -3 6148 5709 2135 161 64 17 chr13 87667157 87667566 -32077332 + MSTA LTR MaLR 1 428 0 273 269 13 0 chr13 87667765 87667843 -32077055 + MIR SINE MIR 178 256 -6 258 368 9 9 chr13 87668147 87668261 -32076637 - L2 LINE L2 -1 3312 3199 1948 184 72 15 chr13 87668841 87669244 -32075654 + MSTB LTR MaLR 1 426 0 421 359 94 0 chr13 87669440 87669663 -32075235 - L2 LINE L2 -657 2657 2414 554 305 100 32 chr13 87669787 87670128 -32074770 - L2 LINE L2 -1745 1569 1206 880 329 79 9 chr13 87670693 87671009 -32073889 + MLT2E LTR ERVL 6 343 -285 710 175 30 39 chr13 87671833 87672128 -32072770 + MLT1A1 LTR MaLR 10 365 0 249 200 14 114 chr13 87672779 87672849 -32072049 - MER58 DNA MER1_type 0 2420 2358 285 29 0 0 chr13 87672885 87672919 -32071979 + (CA)n Simple_repeat Simple_repeat 1 34 0 252 329 0 0 chr13 87672960 87673030 -32071868 + L1MEd LINE L1 495 564 -5555 1978 173 26 22 chr13 87673318 87673698 -32071200 + MLT2D LTR ERVL 1 485 -35 228 174 0 0 chr13 87673700 87673746 -32071152 + LTR66 LTR ERVL 394 439 -171 * 293 130 0 0 chr13 87673740 87673786 -32071112 + MLT2E LTR ERVL 417 462 -2 868 253 106 45 chr13 87673856 87674168 -32070730 + MLT1D LTR MaLR 27 357 -148 411 261 42 8 chr13 87674264 87674383 -32070515 + MLT1D LTR MaLR 340 462 -5 1033 184 9 22 chr13 87674465 87674693 -32070205 - AluJo SINE Alu -4 308 84 1449 268 35 41 chr13 87674815 87675252 -32069646 + L1M4 LINE L1 2861 3294 -2852 1658 239 60 71 chr13 87675252 87675871 -32069027 + LTR9 LTR ERV1 1 612 0 1449 268 35 41 chr13 87675871 87676167 -32068731 + L1M4 LINE L1 3294 3590 -2556 409 260 20 13 chr13 87676325 87676452 -32068446 - MLT1B LTR MaLR 0 374 240 914 237 45 0 chr13 87676543 87676788 -32068110 + L1M4 LINE L1 4012 4267 -1879 997 177 0 0 chr13 87676788 87676963 -32067935 + AluSg/x SINE Alu 136 310 -2 29 47 0 0 chr13 87677097 87677140 -32067758 + AT_rich Low_complexity Low_complexity 1 43 0 1348 285 71 24 chr13 87677608 87677949 -32066949 - L2 LINE L2 -873 2441 2068 3015 108 67 4 chr13 87677949 87678430 -32066468 - MER9 LTR ERVK 0 511 1 1348 285 71 24 chr13 87678430 87678583 -32066315 - L2 LINE L2 -1246 2068 1924 1210 242 10 37 chr13 87678590 87678888 -32066010 - AluJo SINE Alu -22 290 1 235 365 26 0 chr13 87678891 87679006 -32065892 - L2 LINE L2 -1611 1703 1586 2321 132 118 0 chr13 87679069 87679485 -32065413 - MER4C LTR ERV1 0 465 1 677 238 105 11 chr13 87679609 87679790 -32065108 + MER6B DNA MER2_type 13 210 0 384 59 0 0 chr13 87679847 87679898 -32065000 + (TG)n Simple_repeat Simple_repeat 2 52 0 303 308 75 25 chr13 87680197 87680356 -32064542 - L1M4 LINE L1 -893 5253 5087 300 283 113 19 chr13 87681839 87681998 -32062900 - MLT1F1 LTR MaLR -23 519 346 422 333 32 9 chr13 87682009 87682228 -32062670 - MLT1F1 LTR MaLR -324 243 20 2131 100 0 20 chr13 87682778 87683079 -32061819 - AluSq SINE Alu -18 295 1 226 138 15 62 chr13 87683611 87683676 -32061222 + T-rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr13 87683818 87683848 -32061050 + AT_rich Low_complexity Low_complexity 1 30 0 1840 112 0 8 chr13 87684201 87684460 -32060438 - AluSg SINE Alu -51 259 3 24 67 0 0 chr13 87684793 87684838 -32060060 + AT_rich Low_complexity Low_complexity 1 45 0 5249 18 2 2 chr13 87686452 87687294 -32057604 - L1P1 LINE L1 -539 5616 4775 * 5593 30 0 0 chr13 87687292 87687962 -32056936 + L1P1 LINE L1 4122 4791 -1355 2030 140 0 0 chr13 87687962 87688262 -32056636 - AluSg SINE Alu -10 300 1 1232 137 6 0 chr13 87688262 87688445 -32056453 - THE1B LTR MaLR -180 184 1 22 0 0 0 chr13 87688768 87688790 -32056108 + AT_rich Low_complexity Low_complexity 1 22 0 2045 117 0 0 chr13 87688920 87689232 -32055666 + AluSq SINE Alu 1 312 0 228 349 197 0 chr13 87689659 87689811 -32055087 - MIR SINE MIR -52 210 29 980 247 36 91 chr13 87690333 87690771 -32054127 + MLT2B1 LTR ERVL 1 414 0 21 57 0 0 chr13 87691337 87691372 -32053526 + AT_rich Low_complexity Low_complexity 1 35 0 456 180 130 0 chr13 87691701 87691801 -32053097 - L1MA10 LINE L1 0 6334 6222 21 36 0 0 chr13 87692764 87692792 -32052106 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 87692972 87693000 -32051898 + AT_rich Low_complexity Low_complexity 1 28 0 2755 82 8 0 chr13 87693440 87693829 -32051069 - L1PA8 LINE L1 -8 6164 5773 31 0 0 0 chr13 87694789 87694820 -32050078 + AT_rich Low_complexity Low_complexity 1 31 0 208 209 70 12 chr13 87695447 87695533 -32049365 + (TTTAA)n Simple_repeat Simple_repeat 3 93 0 258 333 66 58 chr13 87696139 87696487 -32048411 - L3 LINE CR1 -492 1085 735 23 0 0 0 chr13 87696696 87696719 -32048179 + AT_rich Low_complexity Low_complexity 1 23 0 1381 225 7 0 chr13 87697238 87697545 -32047353 - AluJo SINE Alu 0 309 1 22 35 0 0 chr13 87697566 87697595 -32047303 + AT_rich Low_complexity Low_complexity 1 29 0 1570 211 109 85 chr13 87697782 87698505 -32046393 - LTR1B LTR ERV1 -37 983 46 3660 193 28 58 chr13 87698505 87699387 -32045511 - HUERS-P2 LTR ERV1 -17 3071 2216 1718 163 3 17 chr13 87700578 87700867 -32044031 + AluJo SINE Alu 1 285 -27 297 0 0 0 chr13 87700867 87700900 -32043998 + (CATA)n Simple_repeat Simple_repeat 4 36 0 22 35 0 0 chr13 87701215 87701244 -32043654 + AT_rich Low_complexity Low_complexity 1 29 0 3063 203 56 14 chr13 87701445 87702259 -32042639 - L1MB8 LINE L1 -116 6062 5208 30 45 0 0 chr13 87702644 87702688 -32042210 + AT_rich Low_complexity Low_complexity 1 44 0 41 21 0 0 chr13 87703156 87703204 -32041694 + AT_rich Low_complexity Low_complexity 1 48 0 285 80 48 0 chr13 87703266 87703320 -32041578 - L1PA6 LINE L1 -6 6148 6085 231 245 0 0 chr13 87704838 87704887 -32040011 + (TA)n Simple_repeat Simple_repeat 1 49 0 223 346 40 30 chr13 87705215 87705298 -32039600 + L2 LINE L2 3209 3295 -18 1876 58 70 0 chr13 87705298 87705541 -32039357 - AluY SINE Alu -14 297 38 223 346 40 30 chr13 87705541 87705558 -32039340 + L2 LINE L2 3295 3310 -3 27 0 0 0 chr13 87706213 87706240 -32038658 + AT_rich Low_complexity Low_complexity 1 27 0 33 56 0 0 chr13 87706391 87706445 -32038453 + AT_rich Low_complexity Low_complexity 1 54 0 537 319 22 5 chr13 87706738 87706923 -32037975 + MIR SINE MIR 18 205 -57 1186 206 52 11 chr13 87707103 87707370 -32037528 - L1M2 LINE L1 -6570 279 2 1206 135 15 15 chr13 87707876 87708076 -32036822 - MER30 DNA MER1_type -30 200 1 473 289 16 48 chr13 87708190 87708377 -32036521 - MLT1J2 LTR MaLR -4 446 266 2177 107 0 28 chr13 87709112 87709429 -32035469 - AluSq SINE Alu -5 308 1 24 53 0 0 chr13 87709440 87709478 -32035420 + AT_rich Low_complexity Low_complexity 1 38 0 34 65 0 0 chr13 87710028 87710090 -32034808 + AT_rich Low_complexity Low_complexity 1 62 0 334 288 81 44 chr13 87710557 87710717 -32034181 - MIR SINE MIR -12 250 85 24 32 0 0 chr13 87710718 87710749 -32034149 + AT_rich Low_complexity Low_complexity 1 31 0 2142 168 57 2 chr13 87711293 87711699 -32033199 + MSTA LTR MaLR 1 428 0 940 66 7 7 chr13 87711713 87711864 -32033034 + (TAGA)n Simple_repeat Simple_repeat 2 152 0 220 237 43 11 chr13 87714261 87714354 -32030544 + (TA)n Simple_repeat Simple_repeat 1 96 0 26 50 0 0 chr13 87714748 87714788 -32030110 + AT_rich Low_complexity Low_complexity 1 40 0 1183 219 0 4 chr13 87715683 87715920 -32028978 - MER46A DNA MER2_type 0 236 1 222 356 40 31 chr13 87717126 87717348 -32027550 - L2 LINE L2 -910 2404 2181 711 93 0 0 chr13 87718171 87718278 -32026620 + L1MA2 LINE L1 6198 6304 0 198 71 0 0 chr13 87718512 87718540 -32026358 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4632 64 8 6 chr13 87718540 87719162 -32025736 - L1PA7 LINE L1 -18 6136 5514 2030 130 3 3 chr13 87719335 87719627 -32025271 - AluSg SINE Alu -18 292 1 370 311 71 42 chr13 87719922 87720231 -32024667 - L1MEd LINE L1 -3680 2449 2132 328 311 7 30 chr13 87720400 87720535 -32024363 + MER90 LTR ERV1 5 136 -439 21 0 0 0 chr13 87720985 87721006 -32023892 + AT_rich Low_complexity Low_complexity 1 21 0 384 323 34 61 chr13 87721451 87721753 -32023145 - L1MEd LINE L1 -4862 1257 769 271 284 57 0 chr13 87722158 87722246 -32022652 + MER92B LTR ERV1 544 636 0 21 36 0 0 chr13 87722258 87722286 -32022612 + AT_rich Low_complexity Low_complexity 1 28 0 407 391 31 38 chr13 87722350 87722639 -32022259 - L1MEd LINE L1 -5379 740 454 24 67 0 0 chr13 87723410 87723455 -32021443 + AT_rich Low_complexity Low_complexity 1 45 0 315 202 53 18 chr13 87723602 87723716 -32021182 + (TA)n Simple_repeat Simple_repeat 1 118 0 888 322 79 54 chr13 87723777 87724444 -32020454 + L2 LINE L2 2398 3106 -207 598 183 92 0 chr13 87724444 87724564 -32020334 - FLAM_C SINE Alu -2 131 1 888 322 79 54 chr13 87724564 87724778 -32020120 + L2 LINE L2 3106 3313 0 1167 308 122 31 chr13 87724788 87725864 -32019034 - HAL1 LINE L1 -895 1612 439 431 327 97 5 chr13 87725884 87726101 -32018797 - HAL1 LINE L1 -2174 333 97 764 244 22 120 chr13 87726321 87726546 -32018352 - MLT1A2 LTR MaLR 0 374 173 180 97 0 0 chr13 87726548 87726579 -32018319 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 690 231 39 0 chr13 87726601 87726757 -32018141 - MLT1A2 LTR MaLR -212 162 1 21 71 0 0 chr13 87727253 87727295 -32017603 + AT_rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr13 87727538 87727564 -32017334 + (GA)n Simple_repeat Simple_repeat 1 26 0 1794 254 19 2 chr13 87731102 87731527 -32013371 - MER82 DNA MER2_type -1 652 221 503 174 0 9 chr13 87731542 87731651 -32013247 - L1MA7 LINE L1 -11 6280 6173 711 64 0 0 chr13 87731651 87731745 -32013153 + AluY SINE Alu 211 304 -7 4426 191 10 23 chr13 87731746 87732663 -32012235 - L1MA7 LINE L1 -103 6188 5284 2552 119 58 29 chr13 87733701 87734153 -32010745 - MER4C LTR ERV1 0 465 1 322 184 26 13 chr13 87734266 87734341 -32010557 + MER53 DNA DNA 7 82 -107 2482 132 104 106 chr13 87734341 87735009 -32009889 + MER4A LTR ERV1 1 872 0 473 154 96 10 chr13 87735015 87735119 -32009779 - MER53 DNA DNA -76 113 1 21 89 0 0 chr13 87735260 87735316 -32009582 + AT_rich Low_complexity Low_complexity 1 56 0 2219 63 0 7 chr13 87735844 87736157 -32008741 - AluY SINE Alu 0 313 3 213 196 0 0 chr13 87736448 87736494 -32008404 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 215 338 34 54 chr13 87738133 87738281 -32006617 + MIR3 SINE MIR 28 172 -36 27 29 0 0 chr13 87738888 87738922 -32005976 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 87739243 87739274 -32005624 + AT_rich Low_complexity Low_complexity 1 31 0 537 338 105 53 chr13 87740963 87741419 -32003479 + L2 LINE L2 2833 3312 -1 26 30 0 0 chr13 87741840 87741873 -32003025 + AT_rich Low_complexity Low_complexity 1 33 0 473 314 29 0 chr13 87742050 87742222 -32002676 - MER102a DNA MER1_type -5 325 149 191 409 58 7 chr13 87742431 87742568 -32002330 + L2 LINE L2 3102 3245 -27 377 221 50 24 chr13 87742796 87742896 -32002002 - MER20B DNA MER1_type -45 174 67 22 0 0 0 chr13 87743146 87743168 -32001730 + AT_rich Low_complexity Low_complexity 1 22 0 213 188 0 42 chr13 87743671 87743719 -32001179 + T-rich Low_complexity Low_complexity 5 50 0 2100 259 20 29 chr13 87744119 87744679 -32000219 + REP3 LTR ERV 1 555 -7 6038 74 1 4 chr13 87745049 87745831 -31999067 + LTR17 LTR ERV1 1 780 0 1976 160 0 3 chr13 87746020 87746326 -31998572 + AluSx SINE Alu 1 305 -7 1989 105 37 12 chr13 87746355 87746746 -31998152 - LTR7 LTR ERV1 -1 449 1 234 227 61 15 chr13 87746751 87746817 -31998081 - Charlie2b DNA MER1_type -1543 1239 1171 23 68 0 0 chr13 87746899 87746943 -31997955 + AT_rich Low_complexity Low_complexity 1 44 0 624 251 78 48 chr13 87746944 87747339 -31997559 + Charlie2b DNA MER1_type 2333 2739 -43 312 70 0 0 chr13 87747523 87747566 -31997332 + (CA)n Simple_repeat Simple_repeat 2 44 0 465 383 11 0 chr13 87747620 87747808 -31997090 + L2 LINE L2 2672 2861 -453 1553 185 18 0 chr13 87747824 87748105 -31996793 - MER7A DNA MER2_type 0 346 63 38 51 0 0 chr13 87748119 87748178 -31996720 + AT_rich Low_complexity Low_complexity 1 59 0 248 82 82 49 chr13 87748178 87748300 -31996598 + (TATAA)n Simple_repeat Simple_repeat 3 128 0 309 275 25 0 chr13 87748303 87748383 -31996515 - MER7A DNA MER2_type -266 80 1 1843 130 40 6 chr13 87748503 87748826 -31996072 - L1PB2 LINE L1 -2 6149 5816 325 351 26 0 chr13 87749533 87749647 -31995251 - MIR SINE MIR -56 206 90 2449 324 88 41 chr13 87751596 87753184 -31991714 + L2 LINE L2 43 1705 -1609 181 281 244 0 chr13 87753230 87753312 -31991586 + L2 LINE L2 1917 2018 -1296 1932 131 0 14 chr13 87753318 87753635 -31991263 - AluSx SINE Alu 0 313 1 275 307 0 11 chr13 87753869 87753957 -31990941 + GA-rich Low_complexity Low_complexity 1 87 0 1769 129 129 29 chr13 87753971 87754312 -31990586 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr13 87756981 87757010 -31987888 + AT_rich Low_complexity Low_complexity 1 29 0 1412 278 52 25 chr13 87758032 87758517 -31986381 - MLT1D LTR MaLR -7 498 1 184 222 0 0 chr13 87758899 87758935 -31985963 + L2 LINE L2 3267 3302 -11 22 0 0 0 chr13 87759309 87759331 -31985567 + AT_rich Low_complexity Low_complexity 1 22 0 1265 164 25 16 chr13 87759841 87760085 -31984813 + Tigger1 DNA MER2_type 1467 1712 -706 2080 130 51 25 chr13 87760088 87760443 -31984455 + THE1B LTR MaLR 1 364 0 * 4372 143 24 6 chr13 87760443 87761135 -31983763 + Tigger1 DNA MER2_type 1709 2413 -5 447 52 0 0 chr13 87761667 87761725 -31983173 + (TA)n Simple_repeat Simple_repeat 2 59 0 337 281 99 25 chr13 87762897 87763018 -31981880 + MIR SINE MIR 71 200 -62 38 39 0 0 chr13 87763287 87763339 -31981559 + AT_rich Low_complexity Low_complexity 1 52 0 1989 190 35 55 chr13 87763425 87763987 -31980911 + L1MA7 LINE L1 5743 6284 -7 487 218 64 19 chr13 87764442 87764598 -31980300 + MER96B DNA MER1_type? 18 180 -237 599 223 0 8 chr13 87764599 87764720 -31980178 + FLAM_C SINE Alu 3 122 -21 932 169 60 16 chr13 87764740 87764776 -31980122 + AluJo SINE Alu 85 118 -194 249 83 0 0 chr13 87764776 87764812 -31980086 + (TA)n Simple_repeat Simple_repeat 2 37 0 932 169 60 16 chr13 87764812 87764959 -31979939 + AluJo SINE Alu 118 276 -36 180 77 0 0 chr13 87764966 87764992 -31979906 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 201 39 0 0 chr13 87765657 87765683 -31979215 + (TG)n Simple_repeat Simple_repeat 2 27 0 305 287 23 0 chr13 87766478 87766565 -31978333 + CT-rich Low_complexity Low_complexity 1 89 0 24 32 0 0 chr13 87766680 87766711 -31978187 + AT_rich Low_complexity Low_complexity 1 31 0 2399 127 11 3 chr13 87766743 87767104 -31977794 + THE1B LTR MaLR 1 364 0 36 53 0 0 chr13 87767238 87767295 -31977603 + AT_rich Low_complexity Low_complexity 1 57 0 2076 237 26 46 chr13 87767497 87768038 -31976860 + L1MDa LINE L1 19 548 -5992 5037 162 17 8 chr13 87768068 87768944 -31975954 + MER4D LTR ERV1 1 884 -19 1984 248 82 25 chr13 87768991 87769687 -31975211 + L1MDa LINE L1 485 1539 -5001 278 299 93 0 chr13 87769978 87770085 -31974813 + L2 LINE L2 2909 3025 -247 291 307 90 38 chr13 87770543 87770755 -31974143 - MLT1J LTR MaLR -1 510 288 21 0 0 0 chr13 87771329 87771350 -31973548 + AT_rich Low_complexity Low_complexity 1 21 0 230 298 152 25 chr13 87771384 87771582 -31973316 - Charlie7 DNA MER1_type -2305 307 85 216 0 0 0 chr13 87772599 87772623 -31972275 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr13 87772653 87772690 -31972208 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr13 87773306 87773351 -31971547 + AT_rich Low_complexity Low_complexity 1 45 0 432 317 41 0 chr13 87773626 87773771 -31971127 - MIR SINE MIR -37 225 75 2464 53 3 3 chr13 87774827 87775131 -31969767 - AluY SINE Alu -7 304 1 327 256 186 41 chr13 87775799 87775958 -31968940 - MER5A DNA MER1_type 0 189 1 231 61 0 0 chr13 87776126 87776159 -31968739 + (TA)n Simple_repeat Simple_repeat 1 33 0 1319 223 138 10 chr13 87776209 87776622 -31968276 + MER31B LTR ERV1 1 466 0 26 50 0 0 chr13 87777247 87777287 -31967611 + AT_rich Low_complexity Low_complexity 1 40 0 404 259 0 0 chr13 87779318 87779403 -31965495 - L1PA13 LINE L1 -6352 435 351 253 313 68 99 chr13 87779450 87779865 -31965033 + MLT1J LTR MaLR 18 419 -92 202 250 96 29 chr13 87780337 87780441 -31964457 - MIR SINE MIR -56 206 96 523 225 0 0 chr13 87780642 87780731 -31964167 + L1PA13 LINE L1 208 296 -6491 189 0 0 0 chr13 87780764 87780785 -31964113 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4499 266 48 3 chr13 87781210 87782281 -31962617 + L1PA13 LINE L1 314 1432 -5355 3744 19 1 0 chr13 87782282 87782864 -31962034 - L1P2 LINE L1 -463 5692 5110 1286 26 0 0 chr13 87782864 87783018 -31961880 + L1P LINE L1 3742 3895 -2251 328 333 19 9 chr13 87783136 87783244 -31961654 + L2 LINE L2 2939 3047 -225 526 305 26 7 chr13 87783379 87783533 -31961365 - MIR SINE MIR -47 215 59 23 33 0 0 chr13 87784240 87784270 -31960628 + AT_rich Low_complexity Low_complexity 1 30 0 256 341 23 23 chr13 87784555 87784643 -31960255 - L2 LINE L2 -1 3271 3184 579 328 57 24 chr13 87785177 87785509 -31959389 + MLT1I LTR MaLR 59 401 -8 572 98 22 0 chr13 87785583 87785675 -31959223 - L1MA3 LINE L1 0 6305 6212 944 184 102 2 chr13 87787568 87787948 -31956950 - LTR46 LTR ERV1 -1 459 1 1767 244 33 9 chr13 87991037 87991491 -31753407 - MER82 DNA MER2_type 0 653 189 1021 278 41 28 chr13 87991494 87991930 -31752968 + LTR1 LTR ERV1 3 444 -341 1317 142 13 16 chr13 87991935 87992233 -31752665 - THE1B LTR MaLR 0 375 1 710 161 36 207 chr13 87992233 87992616 -31752282 + LTR1B LTR ERV1 441 757 -69 517 292 12 0 chr13 87992733 87992901 -31751997 - MER82 DNA MER2_type -469 184 15 1191 157 36 72 chr13 87993587 87993919 -31750979 - THE1C LTR MaLR 0 355 10 24 0 0 0 chr13 87993968 87993992 -31750906 + AT_rich Low_complexity Low_complexity 1 24 0 585 177 43 7 chr13 87994082 87994223 -31750675 + L1MB4 LINE L1 6035 6180 0 204 135 27 0 chr13 87994513 87994550 -31750348 + GA-rich Low_complexity Low_complexity 2 39 0 8749 205 12 8 chr13 87994707 87996715 -31748183 + L1P LINE L1 2434 4449 -1697 628 65 0 131 chr13 87996825 87997024 -31747874 - AluY SINE Alu -138 173 1 1794 132 36 7 chr13 87998035 87998316 -31746582 - AluSc SINE Alu -20 289 1 180 179 0 0 chr13 87998568 87998607 -31746291 + (TA)n Simple_repeat Simple_repeat 1 39 0 246 306 0 0 chr13 87998619 87998704 -31746194 + L1MC4 LINE L1 6614 6698 -1344 260 197 0 14 chr13 87998724 87998795 -31746103 + (TA)n Simple_repeat Simple_repeat 1 70 0 308 340 72 0 chr13 87998802 87998955 -31745943 + L1MEd LINE L1 987 1150 -4969 773 296 107 10 chr13 88099443 88099751 -31645147 - MER21B LTR ERV1 -507 356 19 424 168 21 74 chr13 88099774 88099869 -31645029 - MER21B LTR ERV1 -773 90 1 190 356 25 69 chr13 88100142 88100344 -31644554 - L2 LINE L2 -972 2342 2150 28 0 0 0 chr13 88100618 88100646 -31644252 + AT_rich Low_complexity Low_complexity 1 28 0 1994 126 14 0 chr13 88100650 88100944 -31643954 - AluSq SINE Alu -15 298 1 2181 97 13 13 chr13 88101057 88101236 -31643662 - AluSg SINE Alu 0 310 129 207 0 0 0 chr13 88101236 88101259 -31643639 + (TG)n Simple_repeat Simple_repeat 2 24 0 2181 97 13 13 chr13 88101259 88101389 -31643509 - AluSg SINE Alu -180 130 1 617 301 193 41 chr13 88101403 88101954 -31642944 - L2 LINE L2 -172 3141 2504 237 256 35 12 chr13 88102230 88102316 -31642582 + HAL1 LINE L1 1549 1636 -871 180 0 0 0 chr13 88102366 88102386 -31642512 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2886 207 56 78 chr13 88102515 88103368 -31641530 + L1MB4 LINE L1 5178 6036 -144 924 225 147 51 chr13 88103368 88103701 -31641197 - MLT1A1 LTR MaLR 0 365 1 2886 207 56 78 chr13 88103701 88103843 -31641055 + L1MB4 LINE L1 6036 6180 0 27 73 0 0 chr13 88104013 88104068 -31640830 + AT_rich Low_complexity Low_complexity 1 55 0 2141 89 3 0 chr13 88104362 88104668 -31640230 - AluY SINE Alu 0 307 1 3679 165 14 40 chr13 88104927 88105733 -31639165 - LTR1 LTR ERV1 0 785 1 249 296 0 12 chr13 88105823 88105904 -31638994 - MLT1L LTR MaLR -373 242 163 1360 354 66 10 chr13 88107293 88108076 -31636822 - HERV16 LTR ERVL -3807 1189 363 750 310 105 4 chr13 88108298 88108556 -31636342 - LTR16A LTR ERVL 0 450 167 555 167 20 0 chr13 88109153 88109255 -31635643 + FLAM_C SINE Alu 1 104 -39 3670 163 78 6 chr13 88109415 88110141 -31634757 - Tigger3(Golem) DNA MER2_type -11 3018 2240 528 224 47 0 chr13 88110139 88110246 -31634652 - Tigger3(Golem) DNA MER2_type -2917 112 1 * 1516 200 87 22 chr13 88111398 88111768 -31633130 - MSTD LTR MaLR 0 396 3 5196 275 42 37 chr13 88111770 88113496 -31631402 - MSTD-int LTR MaLR 0 1735 2 1372 238 19 87 chr13 88113498 88113923 -31630975 - MSTD LTR MaLR 0 396 1 964 331 99 49 chr13 88113927 88114406 -31630492 + L2 LINE L2 2103 2648 -665 1848 129 0 0 chr13 88114406 88114670 -31630228 - AluSq SINE Alu -12 301 38 964 331 99 49 chr13 88114670 88115023 -31629875 + L2 LINE L2 2648 2982 -331 499 247 69 6 chr13 88115089 88115263 -31629635 - ORSL DNA AcHobo -12 263 79 312 326 36 43 chr13 88115486 88115624 -31629274 + L2 LINE L2 3177 3313 0 1084 156 0 67 chr13 88116725 88116963 -31627935 + L1MA9 LINE L1 6091 6312 0 230 234 0 0 chr13 88117641 88117688 -31627210 + CT-rich Low_complexity Low_complexity 2 48 0 3005 150 64 0 chr13 88117859 88118419 -31626479 + L1MA6 LINE L1 5705 6300 0 847 188 53 24 chr13 88119089 88119297 -31625601 + MER20 DNA MER1_type 2 215 -4 29 106 0 0 chr13 88119480 88119593 -31625305 + AT_rich Low_complexity Low_complexity 1 113 0 25 51 0 0 chr13 88119687 88119726 -31625172 + AT_rich Low_complexity Low_complexity 1 39 0 2060 121 10 0 chr13 88119769 88120059 -31624839 - AluSx SINE Alu -15 297 5 21 0 0 0 chr13 88120561 88120582 -31624316 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 88120711 88120732 -31624166 + AT_rich Low_complexity Low_complexity 1 21 0 239 133 22 0 chr13 88122566 88122611 -31622287 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 213 159 0 0 chr13 88122709 88122753 -31622145 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 245 75 0 chr13 88123463 88123516 -31621382 + MER5B DNA MER1_type 8 64 -114 291 166 72 7 chr13 88123523 88123662 -31621236 + (TA)n Simple_repeat Simple_repeat 2 149 0 2008 130 0 34 chr13 88124513 88124835 -31620063 + AluSx SINE Alu 2 312 0 2454 58 0 3 chr13 88125693 88126003 -31618895 + AluY SINE Alu 1 309 -2 569 261 32 0 chr13 88126034 88126191 -31618707 + MER97c DNA MER1_type? 1 162 -928 235 270 175 36 chr13 88126792 88126929 -31617969 - MIR SINE MIR -50 212 57 828 112 26 0 chr13 88128284 88128400 -31616498 - AluSg SINE Alu -191 119 1 1917 145 10 0 chr13 88129635 88129931 -31614967 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr13 88130068 88130089 -31614809 + AT_rich Low_complexity Low_complexity 1 21 0 462 18 0 0 chr13 88130193 88130248 -31614650 + (CA)n Simple_repeat Simple_repeat 2 56 0 363 310 99 62 chr13 88130249 88130765 -31614133 - L1M4 LINE L1 -1538 4608 4074 653 99 0 0 chr13 88131343 88131434 -31613464 - AluSg1 SINE Alu -218 91 1 2250 71 0 0 chr13 88131444 88131748 -31613150 - AluY SINE Alu 0 304 1 1433 226 34 14 chr13 88131960 88132318 -31612580 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr13 88132449 88132478 -31612420 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 88132926 88132947 -31611951 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr13 88134356 88134405 -31610493 + AT_rich Low_complexity Low_complexity 1 49 0 871 314 32 21 chr13 88134704 88135042 -31609856 - MLT1H1 LTR MaLR -27 528 187 2265 120 43 6 chr13 88135699 88136050 -31608848 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr13 88136408 88136434 -31608464 + AT_rich Low_complexity Low_complexity 1 26 0 2061 91 0 37 chr13 88137515 88137836 -31607062 - AluSp SINE Alu 0 311 2 283 269 261 37 chr13 88139733 88139978 -31604920 + LTR33 LTR ERVL 196 495 -26 305 279 0 0 chr13 88140957 88141036 -31603862 + HERV16 LTR ERVL 1108 1186 -3810 3101 143 30 12 chr13 88141067 88141639 -31603259 - L1MA4 LINE L1 -1 6299 5718 2002 264 18 56 chr13 88141639 88142862 -31602036 - L1MCa LINE L1 -4940 967 6 25 0 0 0 chr13 88142903 88142928 -31601970 + AT_rich Low_complexity Low_complexity 1 25 0 1658 136 39 4 chr13 88143411 88143690 -31601208 - THE1A-int LTR MaLR -1291 289 1 2281 104 7 0 chr13 88143694 88144002 -31600896 - AluSq SINE Alu -3 310 1 2308 117 6 14 chr13 88144013 88144371 -31600527 - THE1A LTR MaLR 0 355 1 2000 138 0 3 chr13 88144838 88145143 -31599755 - AluSc SINE Alu -5 304 1 22 35 0 0 chr13 88145217 88145246 -31599652 + AT_rich Low_complexity Low_complexity 1 29 0 220 177 33 0 chr13 88145284 88145338 -31599560 - MIR SINE MIR -62 146 97 24 0 0 0 chr13 88145343 88145367 -31599531 + AT_rich Low_complexity Low_complexity 1 24 0 1867 184 33 26 chr13 88145496 88145920 -31598978 + L1MA6 LINE L1 5874 6300 0 676 207 0 0 chr13 88146315 88146436 -31598462 - FLAM_A SINE Alu -11 122 2 336 276 52 9 chr13 88146445 88146561 -31598337 + MIR SINE MIR 72 192 -70 520 278 46 7 chr13 88146617 88146768 -31598130 - MIR SINE MIR -64 198 42 41 104 0 0 chr13 88147396 88147473 -31597425 + AT_rich Low_complexity Low_complexity 1 77 0 25 31 0 0 chr13 88148270 88148302 -31596596 + AT_rich Low_complexity Low_complexity 1 32 0 4535 180 40 13 chr13 88149353 88149888 -31595010 + L1MA4 LINE L1 5341 5913 -387 1836 155 142 16 chr13 88149888 88150268 -31594630 + MSTA LTR MaLR 1 428 0 4535 180 40 13 chr13 88150268 88150661 -31594237 + L1MA4 LINE L1 5913 6294 -6 185 406 18 18 chr13 88151294 88151459 -31593439 - MIR3 SINE MIR -25 183 19 268 221 29 0 chr13 88152779 88152847 -31592051 - MIR SINE MIR -71 191 122 25 65 0 0 chr13 88153029 88153075 -31591823 + AT_rich Low_complexity Low_complexity 1 46 0 182 37 37 0 chr13 88153273 88153300 -31591598 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1646 195 0 3 chr13 88153306 88153593 -31591305 - AluJb SINE Alu -26 286 1 29 0 0 0 chr13 88153883 88153912 -31590986 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 88154147 88154173 -31590725 + AT_rich Low_complexity Low_complexity 1 26 0 252 0 0 0 chr13 88155743 88155771 -31589127 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 234 240 64 64 chr13 88156325 88156450 -31588448 + L1MCc LINE L1 818 942 -5481 275 129 24 188 chr13 88156450 88156535 -31588363 + FAM SINE Alu 88 158 -17 1124 231 37 75 chr13 88156656 88156997 -31587901 + L1MCc LINE L1 1055 1407 -5317 2050 196 35 22 chr13 88156997 88157452 -31587446 + LOR1b LTR ERV1 1 461 0 1124 231 37 75 chr13 88157452 88157769 -31587129 + L1MCc LINE L1 1407 1876 -4848 293 286 24 24 chr13 88157831 88157957 -31586941 + L1ME LINE L1 5737 5862 -300 3770 189 21 29 chr13 88157964 88158824 -31586074 + L1MA7 LINE L1 5433 6285 -6 23 0 0 0 chr13 88158861 88158884 -31586014 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr13 88158932 88158961 -31585937 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 88160093 88160116 -31584782 + AT_rich Low_complexity Low_complexity 1 23 0 1402 217 24 101 chr13 88160488 88160982 -31583916 + L1MA3 LINE L1 5840 6295 -10 230 141 156 0 chr13 88161006 88161070 -31583828 + L1MA4 LINE L1 6221 6294 -6 25 31 0 0 chr13 88161638 88161670 -31583228 + AT_rich Low_complexity Low_complexity 1 32 0 302 296 39 74 chr13 88161997 88162227 -31582671 - MLT1J LTR MaLR -58 453 232 22 56 0 0 chr13 88162970 88163006 -31581892 + AT_rich Low_complexity Low_complexity 1 36 0 1933 158 99 8 chr13 88163028 88163420 -31581478 - MSTA LTR MaLR 0 428 1 31 82 0 0 chr13 88164584 88164657 -31580241 + AT_rich Low_complexity Low_complexity 1 73 0 234 318 57 0 chr13 88165030 88165118 -31579780 + L3 LINE CR1 476 568 -1009 1731 176 3 13 chr13 88165411 88165717 -31579181 - AluJb SINE Alu -9 303 1 30 69 0 0 chr13 88165988 88166046 -31578852 + AT_rich Low_complexity Low_complexity 1 58 0 194 309 18 0 chr13 88167251 88167306 -31577592 - MIR SINE MIR -177 85 30 2443 67 0 6 chr13 88167428 88167741 -31577157 + AluY SINE Alu 1 311 0 487 302 31 36 chr13 88167800 88168022 -31576876 + MER58A DNA MER1_type 4 224 0 1533 187 55 3 chr13 88168321 88168647 -31576251 + MER2 DNA MER2_type 1 343 -1 2544 245 65 21 chr13 88169032 88169739 -31575159 - MER21B LTR ERV1 -107 756 19 424 168 21 74 chr13 88169762 88169857 -31575041 - MER21B LTR ERV1 -773 90 1 190 356 25 69 chr13 88170130 88170332 -31574566 - L2 LINE L2 -972 2342 2150 28 0 0 0 chr13 88170606 88170634 -31574264 + AT_rich Low_complexity Low_complexity 1 28 0 1994 126 14 0 chr13 88170638 88170932 -31573966 - AluSq SINE Alu -15 298 1 2181 88 23 3 chr13 88171046 88171351 -31573547 - AluSx SINE Alu 0 312 2 30 27 0 0 chr13 88171483 88171520 -31573378 + AT_rich Low_complexity Low_complexity 1 37 0 2417 60 0 3 chr13 88171547 88171848 -31573050 - AluY SINE Alu -11 300 1 29 84 0 0 chr13 88173235 88173306 -31571592 + AT_rich Low_complexity Low_complexity 1 71 0 205 304 93 47 chr13 88174672 88174801 -31570097 - MIR SINE MIR -63 145 18 21 0 0 0 chr13 88175370 88175391 -31569507 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr13 88175529 88175557 -31569341 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 270 198 35 173 chr13 88176628 88176741 -31568157 + MER110A LTR ERV1 61 135 -333 2117 60 11 0 chr13 88176741 88177025 -31567873 - L1PA8 LINE L1 0 6172 5886 270 198 35 173 chr13 88177025 88177113 -31567785 + MER110A LTR ERV1 135 234 -234 1935 145 3 10 chr13 88177119 88177422 -31567476 + AluSx SINE Alu 1 301 -11 725 258 9 64 chr13 88178416 88178730 -31566168 - L1MB8 LINE L1 -54 6124 5820 461 184 0 0 chr13 88178704 88178780 -31566118 - L1P4 LINE L1 -372 5794 5719 * 37 23 0 0 chr13 88178795 88178839 -31566059 + AT_rich Low_complexity Low_complexity 1 44 0 338 181 60 0 chr13 88179495 88179578 -31565320 - Charlie2a DNA MER1_type -59 2803 2716 836 232 0 0 chr13 88179602 88179787 -31565111 - Charlie2a DNA MER1_type -1206 1656 1472 1438 165 23 95 chr13 88180249 88180618 -31564280 - MER4A LTR ERV1 0 664 261 503 133 89 0 chr13 88180618 88180708 -31564190 - MER4A LTR ERV1 -566 98 1 272 130 0 37 chr13 88180780 88180834 -31564064 - Alu SINE Alu 0 302 251 22 35 0 0 chr13 88180865 88180894 -31564004 + AT_rich Low_complexity Low_complexity 1 29 0 2081 122 0 3 chr13 88180941 88181250 -31563648 - AluSx SINE Alu 0 308 1 383 200 11 0 chr13 88182122 88182212 -31562686 + L1MA2 LINE L1 6214 6304 0 354 304 60 54 chr13 88182401 88182585 -31562313 - MLT1J LTR MaLR -258 253 69 571 267 89 10 chr13 88183684 88183886 -31561012 + MIR SINE MIR 23 240 -22 213 108 0 0 chr13 88187323 88187360 -31557538 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 1765 205 23 61 chr13 88187815 88188338 -31556560 + MLT1D LTR MaLR 1 503 -2 23 0 0 0 chr13 88189539 88189562 -31555336 + AT_rich Low_complexity Low_complexity 1 23 0 287 258 15 0 chr13 88189767 88189833 -31555065 + HERV16 LTR ERVL 1453 1519 -4135 517 327 25 43 chr13 88190153 88190177 -31554721 + HERV16 LTR ERVL 1960 1983 -3781 2060 135 127 16 chr13 88190177 88190562 -31554336 + MSTA LTR MaLR 1 428 0 517 327 25 43 chr13 88190562 88190815 -31554083 + HERV16 LTR ERVL 1983 2232 -3532 618 285 119 55 chr13 88190824 88191228 -31553670 + HERV16 LTR ERVL 2014 2443 -2553 3301 162 22 48 chr13 88191228 88191360 -31553538 - Tigger1 DNA MER2_type 0 2418 2284 183 42 0 0 chr13 88191360 88191384 -31553514 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2251 65 0 0 chr13 88191384 88191662 -31553236 - AluY SINE Alu -33 278 1 3301 162 22 48 chr13 88191662 88192196 -31552702 - Tigger1 DNA MER2_type -132 2286 1768 2205 91 0 19 chr13 88192340 88192647 -31552251 - AluY SINE Alu -10 301 1 279 0 0 0 chr13 88192684 88192715 -31552183 + (TG)n Simple_repeat Simple_repeat 2 32 0 2386 242 18 3 chr13 88193308 88193915 -31550983 + L1 LINE L1 3907 4522 -1624 2854 138 48 10 chr13 88193919 88194420 -31550478 + L1PA16 LINE L1 5638 6157 -9 2252 198 25 0 chr13 88194921 88195356 -31549542 - Tigger1 DNA MER2_type 0 2418 1973 23 0 0 0 chr13 88195365 88195388 -31549510 + AT_rich Low_complexity Low_complexity 1 23 0 412 129 0 0 chr13 88195397 88195459 -31549439 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 2414 82 0 0 chr13 88195459 88195765 -31549133 - AluY SINE Alu -5 306 1 2188 97 0 29 chr13 88195773 88196082 -31548816 - AluSq SINE Alu -9 304 5 301 268 196 34 chr13 88196204 88196495 -31548403 - L1MEd LINE L1 -5003 1116 779 2492 161 106 7 chr13 88196587 88197039 -31547859 - LOR1a LTR ERV1 0 497 1 24 67 0 0 chr13 88197343 88197388 -31547510 + AT_rich Low_complexity Low_complexity 1 45 0 868 296 62 0 chr13 88197394 88197685 -31547213 - L1MB7 LINE L1 -62 6122 5814 4361 250 41 15 chr13 88197689 88199191 -31545707 - L1MB7 LINE L1 -566 5600 3878 7589 189 30 5 chr13 88199194 88200607 -31544291 - MSTA-int LTR MaLR -201 1450 2 919 123 52 7 chr13 88200608 88200763 -31544135 - MSTA LTR MaLR 0 428 267 427 187 47 38 chr13 88203043 88203177 -31541721 + L1ME LINE L1 5652 5789 -373 22 56 0 0 chr13 88203191 88203227 -31541671 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 88204292 88204313 -31540585 + AT_rich Low_complexity Low_complexity 1 21 0 4284 209 37 18 chr13 88204313 88204417 -31540481 - L1MA9 LINE L1 -42 6270 6169 423 0 0 0 chr13 88204417 88204464 -31540434 + (TG)n Simple_repeat Simple_repeat 1 47 0 4284 209 37 18 chr13 88204464 88206292 -31538606 - L1MA9 LINE L1 -143 6169 4300 1589 182 78 31 chr13 88206299 88206657 -31538241 + THE1C LTR MaLR 1 375 0 8816 137 59 21 chr13 88206660 88208179 -31536719 + THE1C-int LTR MaLR 4 1580 0 1460 159 89 45 chr13 88208179 88208538 -31536360 + THE1C LTR MaLR 1 375 0 521 204 45 62 chr13 88208543 88208719 -31536179 - L1MA9 LINE L1 -1854 4292 4120 1138 237 43 51 chr13 88208910 88209303 -31535595 - MLT1B LTR MaLR 0 390 1 4726 140 84 31 chr13 88210995 88211871 -31533027 - MER49 LTR ERV1 0 923 1 24 53 0 0 chr13 88212651 88212689 -31532209 + AT_rich Low_complexity Low_complexity 1 38 0 1989 154 18 125 chr13 88212907 88213156 -31531742 - MER66B LTR ERV1 0 486 325 2204 121 0 0 chr13 88213156 88213469 -31531429 - AluSq SINE Alu 0 313 1 1989 154 18 125 chr13 88213469 88213763 -31531135 - MER66B LTR ERV1 -161 325 1 22 0 0 0 chr13 88214106 88214128 -31530770 + AT_rich Low_complexity Low_complexity 1 22 0 1346 134 22 46 chr13 88214449 88214955 -31529943 - L1MA4 LINE L1 -3 6297 5683 1933 121 54 0 chr13 88214955 88215235 -31529663 - AluSg SINE Alu -15 295 1 1346 134 22 46 chr13 88215235 88215312 -31529586 - L1MA4 LINE L1 -617 5683 5606 23 0 0 0 chr13 88217271 88217294 -31527604 + AT_rich Low_complexity Low_complexity 1 23 0 1998 248 31 55 chr13 88218011 88218822 -31526076 + L1MB5 LINE L1 3324 4114 -2032 970 274 72 16 chr13 88218840 88219147 -31525751 - MLT1A1 LTR MaLR -37 328 5 2966 231 50 26 chr13 88219153 88220383 -31524515 + L1MB5 LINE L1 4879 6138 -36 643 258 148 36 chr13 88220515 88220872 -31524026 - L1ME1 LINE L1 -214 5952 5556 514 281 20 20 chr13 88220989 88221135 -31523763 + MLT1G1 LTR MaLR 448 593 -2 2087 98 89 9 chr13 88221433 88221760 -31523138 - THE1A LTR MaLR -2 353 1 506 27 14 0 chr13 88221760 88221833 -31523065 - THE1A-int LTR MaLR 0 1580 1507 1288 93 38 0 chr13 88221833 88222016 -31522882 - MLT2A1 LTR ERVL -69 375 186 4422 85 2 0 chr13 88222016 88222593 -31522305 - HERVL LTR ERVL -497 5157 4580 2548 87 29 19 chr13 88222593 88222971 -31521927 - THE1A-int LTR MaLR -1198 382 1 2067 136 7 0 chr13 88222974 88223283 -31521615 - AluSq SINE Alu -2 311 1 1282 137 0 0 chr13 88223294 88223484 -31521414 - THE1A LTR MaLR 0 355 166 1403 91 5 43 chr13 88223586 88223794 -31521104 - AluSq SINE Alu -109 204 5 10740 165 20 27 chr13 88223800 88225788 -31519110 - Tigger1 DNA MER2_type -444 1974 1 1954 147 0 3 chr13 88225818 88226118 -31518780 - AluSx SINE Alu -11 301 3 662 180 16 0 chr13 88226271 88226393 -31518505 + MLT1A1 LTR MaLR 1 124 -241 253 167 0 0 chr13 88226431 88226479 -31518419 - LTR66 LTR ERVL -169 441 394 188 217 83 0 chr13 88226490 88226550 -31518348 - MIR SINE MIR -70 192 128 23 0 0 0 chr13 88228176 88228199 -31516699 + AT_rich Low_complexity Low_complexity 1 23 0 258 122 0 0 chr13 88228458 88228499 -31516399 + L1MA9 LINE L1 6234 6274 -38 3149 241 24 31 chr13 88228928 88229856 -31515042 + HERVL74 LTR ERVL 2400 3555 -1 1229 251 49 25 chr13 88229859 88230265 -31514633 + LTR52 LTR ERVL 3 418 -3 290 286 14 0 chr13 88230279 88230349 -31514549 + MIR SINE MIR 173 243 -19 289 340 42 34 chr13 88230671 88230933 -31513965 - ERVL LTR ERVL -1817 3947 3684 1860 160 24 45 chr13 88232810 88233191 -31511707 + THE1C LTR MaLR 3 375 0 3468 92 10 75 chr13 88233191 88233778 -31511120 + THE1C-int LTR MaLR 1 549 -1031 357 89 54 0 chr13 88233778 88233834 -31511064 + MSTA LTR MaLR 349 407 -21 216 0 0 0 chr13 88233837 88233861 -31511037 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr13 88234117 88234150 -31510748 + AT_rich Low_complexity Low_complexity 1 33 0 421 293 174 29 chr13 88234150 88234461 -31510437 + HAL1 LINE L1 103 458 -2049 798 269 86 23 chr13 88234468 88234615 -31510283 + L1MB2 LINE L1 1491 1627 -4757 2153 86 3 30 chr13 88234615 88234917 -31509981 + AluSq SINE Alu 6 299 -14 798 269 86 23 chr13 88234917 88235118 -31509780 + L1MB2 LINE L1 1627 1861 -4523 10472 233 31 28 chr13 88235161 88235959 -31508939 + L1MB2 LINE L1 2025 2820 -3587 1981 133 0 13 chr13 88235959 88236299 -31508599 + AluSg SINE Alu 1 310 0 10472 233 31 28 chr13 88236299 88237947 -31506951 + L1MB2 LINE L1 2820 4463 -1944 240 111 0 0 chr13 88237947 88237983 -31506915 + (CAA)n Simple_repeat Simple_repeat 1 36 0 10472 233 31 28 chr13 88237983 88239890 -31505008 + L1MB2 LINE L1 4463 6405 -2 2269 80 3 0 chr13 88239994 88240281 -31504617 - AluY SINE Alu -21 290 3 245 335 92 18 chr13 88240281 88240499 -31504399 + HAL1 LINE L1 1624 1857 -650 24 53 0 0 chr13 88242422 88242460 -31502438 + AT_rich Low_complexity Low_complexity 1 38 0 290 177 62 106 chr13 88243393 88243506 -31501392 - LTR27 LTR ERV1 -2 634 527 3234 209 76 29 chr13 88243607 88244436 -31500462 - LTR28 LTR ERV1 -152 868 1 1260 266 90 59 chr13 88244472 88245703 -31499195 - Charlie2a DNA MER1_type -16 2846 1578 252 0 0 0 chr13 88245751 88245779 -31499119 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1475 204 0 14 chr13 88245785 88246064 -31498834 - AluJb SINE Alu -37 275 1 776 157 11 73 chr13 88246129 88246320 -31498578 - LTR27 LTR ERV1 -260 376 198 902 264 128 86 chr13 88246322 88247394 -31497504 - Charlie2a DNA MER1_type -1393 1469 325 648 58 10 19 chr13 88247394 88247498 -31497400 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 902 264 128 86 chr13 88247498 88247808 -31497090 - Charlie2a DNA MER1_type -2537 325 29 197 306 46 19 chr13 88247837 88247945 -31496953 + L2 LINE L2 1559 1669 -1645 573 338 39 0 chr13 88248039 88248273 -31496625 + MER46C DNA MER2_type 96 338 0 210 318 35 0 chr13 88248540 88248625 -31496273 + (TA)n Simple_repeat Simple_repeat 1 88 0 203 100 0 50 chr13 88248626 88248666 -31496232 + (TATG)n Simple_repeat Simple_repeat 2 39 0 360 308 175 26 chr13 88248819 88249127 -31495771 + L2 LINE L2 2951 3304 -9 758 151 0 43 chr13 88249127 88249266 -31495632 + AluJ SINE Alu 1 133 -169 1026 157 0 18 chr13 88249303 88249469 -31495429 + AluJ SINE Alu 130 292 -20 23 0 0 0 chr13 88249830 88249853 -31495045 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 88250621 88250658 -31494240 + AT_rich Low_complexity Low_complexity 1 37 0 513 125 0 0 chr13 88250760 88250840 -31494058 + MADE1 DNA Mariner 1 80 0 24 32 0 0 chr13 88250947 88250978 -31493920 + AT_rich Low_complexity Low_complexity 1 31 0 1309 37 0 0 chr13 88251460 88251623 -31493275 + L1PA4 LINE L1 5988 6150 -5 21 0 0 0 chr13 88251765 88251786 -31493112 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr13 88252492 88252534 -31492364 + (CA)n Simple_repeat Simple_repeat 2 43 0 29 28 0 0 chr13 88252567 88252603 -31492295 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr13 88252696 88252727 -31492171 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr13 88253137 88253172 -31491726 + AT_rich Low_complexity Low_complexity 1 35 0 832 186 131 0 chr13 88253195 88253394 -31491504 - L1MC3 LINE L1 -1067 6718 6494 1438 205 61 24 chr13 88253416 88253826 -31491072 + L1MC3 LINE L1 6752 7176 -609 423 256 128 35 chr13 88253960 88254163 -31490735 + LTR16A1 LTR ERVL 236 457 0 625 251 17 29 chr13 88254195 88254370 -31490528 + MER69B DNA AcHobo 19 191 -1035 404 358 16 26 chr13 88254432 88254625 -31490273 + MER69B DNA AcHobo 387 577 -649 804 196 47 65 chr13 88254678 88254892 -31490006 + AluJo SINE Alu 86 295 -17 755 258 98 31 chr13 88254944 88254965 -31489933 + MER69B DNA AcHobo 671 689 -1837 219 69 0 0 chr13 88254965 88254994 -31489904 + (TG)n Simple_repeat Simple_repeat 2 30 0 755 258 98 31 chr13 88254994 88255360 -31489538 + MER69B DNA AcHobo 689 1084 -142 528 72 0 0 chr13 88255362 88255431 -31489467 - L1PA5 LINE L1 -3392 2754 2686 * 17743 46 84 2 chr13 88255424 88258222 -31486676 + L1PA5 LINE L1 2737 5781 -373 42372 33 22 1 chr13 88258232 88264249 -31480649 + L1PA2 LINE L1 12 6155 0 26 30 0 0 chr13 88264452 88264485 -31480413 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr13 88264617 88264657 -31480241 + AT_rich Low_complexity Low_complexity 1 40 0 3113 39 8 0 chr13 88264688 88265069 -31479829 + L1PA5 LINE L1 5770 6153 -1 1808 150 18 3 chr13 88265079 88265365 -31479533 + AluSx SINE Alu 1 290 -22 277 264 0 0 chr13 88265395 88265501 -31479397 + L1MEc LINE L1 2166 2271 -4125 871 206 15 20 chr13 88265502 88265701 -31479197 - MER3 DNA MER1_type 0 209 12 458 193 70 18 chr13 88265711 88265825 -31479073 + L1MEc LINE L1 2269 2388 -4008 429 291 67 82 chr13 88265833 88266176 -31478722 + L2 LINE L2 2976 3313 0 23 54 0 0 chr13 88266566 88266603 -31478295 + AT_rich Low_complexity Low_complexity 1 37 0 1803 151 122 65 chr13 88267583 88267626 -31477272 - MSTA LTR MaLR -2 426 387 3654 182 43 61 chr13 88267626 88268597 -31476301 - LTR13 LTR ERVK 0 954 1 1803 151 122 65 chr13 88268597 88268785 -31476113 - MSTA LTR MaLR -41 387 211 1575 183 11 18 chr13 88268785 88269095 -31475803 - AluJo SINE Alu 0 308 1 1803 151 122 65 chr13 88269095 88269264 -31475634 - MSTA LTR MaLR -217 211 1 760 219 87 92 chr13 88269333 88269680 -31475218 - MLT1C LTR MaLR 0 467 123 1409 212 0 7 chr13 88269712 88269990 -31474908 - AluJb SINE Alu -1 311 36 285 260 144 19 chr13 88270002 88270106 -31474792 - MLT1C LTR MaLR -388 117 1 413 289 42 0 chr13 88270596 88270738 -31474160 - MIR SINE MIR -8 254 107 449 184 14 21 chr13 88271431 88271572 -31473326 + (CATATA)n Simple_repeat Simple_repeat 4 143 0 225 228 0 0 chr13 88271626 88271683 -31473215 + MLT2B1 LTR ERVL 464 520 0 239 306 22 8 chr13 88271697 88271831 -31473067 + (TA)n Simple_repeat Simple_repeat 1 136 0 251 211 0 14 chr13 88271836 88271907 -31472991 + (TATATG)n Simple_repeat Simple_repeat 2 71 0 1075 236 68 7 chr13 88271935 88272228 -31472670 - MLT2C1 LTR ERVL -86 311 1 450 324 0 7 chr13 88273574 88273722 -31471176 + MIR SINE MIR 40 186 -76 366 348 92 13 chr13 88273963 88274190 -31470708 - MIR SINE MIR 0 262 18 452 293 27 27 chr13 88274197 88274385 -31470513 + MLT1J LTR MaLR 1 188 -323 2295 120 16 27 chr13 88274993 88275361 -31469537 + THE1B LTR MaLR 1 364 0 861 208 48 146 chr13 88275460 88275955 -31468943 - LTR34 LTR ERV1 -4 695 249 447 204 44 18 chr13 88276089 88276202 -31468696 - MER4C LTR ERV1 -349 116 1 265 191 15 29 chr13 88276202 88276269 -31468629 + MLT1J LTR MaLR 288 353 -158 227 236 0 56 chr13 88278154 88278243 -31466655 + A-rich Low_complexity Low_complexity 2 85 0 1922 142 3 0 chr13 88278469 88278786 -31466112 - AluSx SINE Alu 0 318 1 908 208 19 24 chr13 88279290 88279502 -31465396 + MER2 DNA MER2_type 1 211 -134 551 98 24 0 chr13 88279567 88279649 -31465249 + MER2 DNA MER2_type 177 260 -85 711 282 6 0 chr13 88279671 88279845 -31465053 - L1PA16 LINE L1 -21 6145 5971 25 31 0 0 chr13 88280081 88280113 -31464785 + AT_rich Low_complexity Low_complexity 1 32 0 222 191 63 0 chr13 88280171 88280234 -31464664 + A-rich Low_complexity Low_complexity 1 67 0 2274 77 0 0 chr13 88280438 88280723 -31464175 - AluSc SINE Alu -24 285 1 238 193 12 24 chr13 88281838 88281921 -31462977 + CT-rich Low_complexity Low_complexity 2 83 0 23 22 0 44 chr13 88282033 88282058 -31462840 + AT_rich Low_complexity Low_complexity 1 26 -17 2158 92 0 3 chr13 88282058 88282364 -31462534 - AluY SINE Alu 0 305 1 23 22 0 44 chr13 88282364 88282382 -31462516 + AT_rich Low_complexity Low_complexity 26 43 0 1406 266 92 27 chr13 88282906 88283462 -31461436 + MLT1E LTR MaLR 2 593 0 36 62 0 0 chr13 88283780 88283844 -31461054 + AT_rich Low_complexity Low_complexity 1 64 0 1692 162 10 29 chr13 88284139 88284312 -31460586 - AluJb SINE Alu -4 308 142 288 0 0 0 chr13 88284312 88284344 -31460554 + (TA)n Simple_repeat Simple_repeat 2 33 0 1692 162 10 29 chr13 88284344 88284484 -31460414 - AluJb SINE Alu -170 142 1 297 75 0 0 chr13 88284638 88284678 -31460220 + (TA)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr13 88284679 88284706 -31460192 + AT_rich Low_complexity Low_complexity 1 27 0 531 202 0 8 chr13 88284719 88284838 -31460060 - FLAM_A SINE Alu -1 141 24 24 32 0 0 chr13 88285842 88285873 -31459025 + AT_rich Low_complexity Low_complexity 1 31 0 261 339 42 0 chr13 88286008 88286126 -31458772 + MER5C DNA MER1_type 1 123 -201 1723 166 3 0 chr13 88286132 88286428 -31458470 + AluSx SINE Alu 11 307 -5 23 54 0 0 chr13 88286800 88286837 -31458061 + AT_rich Low_complexity Low_complexity 1 37 0 999 38 52 0 chr13 88286963 88287173 -31457725 + (TTCC)n Simple_repeat Simple_repeat 1 220 0 464 158 21 42 chr13 88287188 88287283 -31457615 - AluJb SINE Alu -102 210 118 558 239 7 14 chr13 88287297 88287435 -31457463 - FLAM_C SINE Alu -6 137 1 4133 194 102 151 chr13 88287864 88288488 -31456410 - L1MC3 LINE L1 -7 7778 7125 249 206 59 69 chr13 88288488 88288590 -31456308 - MLT1F1 LTR MaLR -442 125 25 4133 194 102 151 chr13 88288590 88289987 -31454911 - L1MC3 LINE L1 -660 7125 5760 440 184 11 11 chr13 88290018 88290105 -31454793 - L1MCa LINE L1 -6320 106 20 264 30 0 0 chr13 88290119 88290152 -31454746 + (TG)n Simple_repeat Simple_repeat 2 34 0 2179 111 3 7 chr13 88290841 88291147 -31453751 - AluSq SINE Alu -8 305 1 23 54 0 0 chr13 88291390 88291427 -31453471 + AT_rich Low_complexity Low_complexity 1 37 0 1862 197 9 0 chr13 88291439 88291784 -31453114 + MER7A DNA MER2_type 1 346 0 243 0 0 0 chr13 88292240 88292267 -31452631 + (CA)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 88293257 88293289 -31451609 + AT_rich Low_complexity Low_complexity 1 32 0 550 193 18 0 chr13 88293297 88293406 -31451492 - L1MA9 LINE L1 -22 6290 6180 486 202 21 0 chr13 88293408 88293502 -31451396 - L1MA9 LINE L1 -231 6081 5986 979 204 43 45 chr13 88293531 88293795 -31451103 - L1MA9 LINE L1 -574 5738 5475 273 29 0 0 chr13 88293795 88293829 -31451069 + (TG)n Simple_repeat Simple_repeat 2 35 0 979 204 43 45 chr13 88293829 88294095 -31450803 - L1MA9 LINE L1 -837 5475 5038 * 1440 165 12 47 chr13 88294085 88294407 -31450491 + L1 LINE L1 4288 4598 -1548 2801 135 56 76 chr13 88294407 88294998 -31449900 + LTR1 LTR ERV1 1 579 -206 25 31 0 0 chr13 88296066 88296098 -31448800 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr13 88296904 88296943 -31447955 + AT_rich Low_complexity Low_complexity 1 39 0 2281 179 26 12 chr13 88297259 88297679 -31447219 - MSTB LTR MaLR 0 426 1 8192 198 43 4 chr13 88297693 88299263 -31445635 - MSTB-int LTR MaLR -16 1635 5 2025 172 109 0 chr13 88299267 88299651 -31445247 - MSTB LTR MaLR 0 426 1 2095 167 54 120 chr13 88300266 88300427 -31444471 + L1MA9 LINE L1 5692 5862 -450 1605 156 169 40 chr13 88300427 88300806 -31444092 + MSTA LTR MaLR 1 428 0 2095 167 54 120 chr13 88300806 88301254 -31443644 + L1MA9 LINE L1 5862 6261 -51 244 200 0 0 chr13 88301490 88301545 -31443353 + L1MC4 LINE L1 6652 6706 -1336 189 328 27 98 chr13 88302048 88302231 -31442667 + MER5B DNA MER1_type 4 173 -5 736 295 160 51 chr13 88302629 88302752 -31442146 - L2 LINE L2 -36 3277 3169 2057 106 0 14 chr13 88302752 88302934 -31441964 - AluSg SINE Alu 0 309 131 207 0 0 0 chr13 88302934 88302957 -31441941 + (TG)n Simple_repeat Simple_repeat 2 24 0 2057 106 0 14 chr13 88302957 88303087 -31441811 - AluSg SINE Alu -178 131 1 736 295 160 51 chr13 88303087 88303779 -31441119 - L2 LINE L2 -144 3169 2375 185 369 12 0 chr13 88303934 88304018 -31440880 + L2 LINE L2 2172 2256 -1058 353 347 134 37 chr13 88304044 88304508 -31440390 + L2 LINE L2 2456 2964 -350 2970 185 24 18 chr13 88306265 88306934 -31437964 - L1MA3 LINE L1 -30 6275 5603 2331 88 3 0 chr13 88307563 88307859 -31437039 + AluY SINE Alu 3 299 -12 2070 118 0 4 chr13 88308449 88308729 -31436169 + AluSx SINE Alu 1 279 -33 257 67 0 22 chr13 88308731 88308776 -31436122 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1531 202 18 11 chr13 88309211 88309538 -31435360 + AluJb SINE Alu 1 329 0 21 57 0 0 chr13 88309915 88309950 -31434948 + AT_rich Low_complexity Low_complexity 1 35 0 207 288 82 0 chr13 88310079 88310152 -31434746 - MIR SINE MIR -54 208 130 2016 188 37 34 chr13 88310788 88311336 -31433562 + MLT2A2 LTR ERVL 1 554 0 183 260 40 20 chr13 88311724 88311774 -31433124 - L2 LINE L2 -2731 583 533 1730 164 148 16 chr13 88312231 88312609 -31432289 + MSTA LTR MaLR 1 428 0 8834 160 20 38 chr13 88312611 88312664 -31432234 + MSTA-int LTR MaLR 3 55 -1525 2068 164 5 24 chr13 88312664 88313035 -31431863 - THE1B LTR MaLR 0 364 1 10681 107 26 3 chr13 88313035 88314580 -31430318 - THE1B-int LTR MaLR 0 1580 1 2183 132 19 19 chr13 88314580 88314944 -31429954 - THE1B LTR MaLR 0 364 1 8834 160 20 38 chr13 88314944 88316494 -31428404 + MSTA-int LTR MaLR 52 1580 0 1856 167 125 10 chr13 88316494 88316877 -31428021 + MSTA LTR MaLR 1 427 -1 246 275 0 58 chr13 88316886 88316955 -31427943 + MLT1F1 LTR MaLR 42 106 -461 1193 180 75 27 chr13 88316971 88317266 -31427632 + L1MD3 LINE L1 7389 7697 -298 23 42 0 21 chr13 88317913 88317946 -31426952 + AT_rich Low_complexity Low_complexity 1 34 -13 6823 54 9 0 chr13 88317946 88319102 -31425796 - L1PA7 LINE L1 -11 6143 4980 23 42 0 21 chr13 88319102 88319116 -31425782 + AT_rich Low_complexity Low_complexity 34 47 0 649 186 7 71 chr13 88320508 88320648 -31424250 + FLAM_C SINE Alu 3 133 0 1861 88 0 0 chr13 88322875 88323139 -31421759 + AluSg SINE Alu 54 317 0 245 214 29 97 chr13 88323238 88323302 -31421596 - LTR33 LTR ERVL -12 509 453 2208 130 11 32 chr13 88323302 88323672 -31421226 + THE1B LTR MaLR 1 362 -2 245 214 29 97 chr13 88323672 88323710 -31421188 - LTR33 LTR ERVL -68 453 414 * 4045 143 18 0 chr13 88323713 88324371 -31420527 + L1PA13 LINE L1 5488 6157 -6 424 274 57 51 chr13 88324371 88324518 -31420380 - LTR33 LTR ERVL -327 194 44 970 225 122 44 chr13 88324700 88325086 -31419812 - LTR52 LTR ERVL -5 416 1 230 270 66 92 chr13 88325244 88325396 -31419502 + L2 LINE L2 3161 3308 -5 1954 128 3 41 chr13 88325539 88325858 -31419040 - AluSx SINE Alu -5 307 1 24 32 0 0 chr13 88326574 88326605 -31418293 + AT_rich Low_complexity Low_complexity 1 31 0 380 245 26 0 chr13 88327120 88327271 -31417627 + (TTATA)n Simple_repeat Simple_repeat 5 159 0 22 0 0 0 chr13 88328026 88328048 -31416850 + AT_rich Low_complexity Low_complexity 1 22 0 1712 170 14 3 chr13 88328482 88328770 -31416128 + AluSx SINE Alu 1 291 -21 2252 105 0 10 chr13 88328775 88329071 -31415827 + AluSc SINE Alu 2 294 -15 13895 148 23 6 chr13 88329137 88331513 -31413385 + Tigger1 DNA MER2_type 1 2418 0 1104 256 52 54 chr13 88331608 88332068 -31412830 + MLT1C LTR MaLR 1 459 -8 2899 142 27 4 chr13 88332325 88332811 -31412087 - LOR1a LTR ERV1 0 497 1 2186 135 16 38 chr13 88333345 88333716 -31411182 + THE1B LTR MaLR 1 363 -1 432 258 113 52 chr13 88335661 88335909 -31408989 - L1MDa LINE L1 -3947 2593 2331 280 361 10 0 chr13 88336443 88336540 -31408358 - MER5A DNA MER1_type -80 109 12 4372 178 47 9 chr13 88336631 88338170 -31406728 + L1MA8 LINE L1 4676 6274 -17 1789 190 35 63 chr13 88339756 88340378 -31404520 + pTR5 LTR ERV1 741 1345 -1093 4043 137 108 38 chr13 88340393 88341161 -31403737 + LTR12 LTR ERV1 5 826 0 331 262 158 16 chr13 88341330 88341513 -31403385 + LTR37B LTR ERV1 252 460 -8 24 77 0 0 chr13 88341864 88341916 -31402982 + AT_rich Low_complexity Low_complexity 1 52 0 1618 184 117 50 chr13 88342009 88342245 -31402653 + MSTA LTR MaLR 1 276 -152 2337 92 0 3 chr13 88342245 88342551 -31402347 + AluY SINE Alu 1 305 -6 1618 184 117 50 chr13 88342551 88342715 -31402183 + MSTA LTR MaLR 276 428 0 9160 153 8 37 chr13 88342731 88344322 -31400576 + MSTA-int LTR MaLR 37 1580 0 1796 165 133 13 chr13 88344322 88344704 -31400194 + MSTA LTR MaLR 1 428 0 277 329 0 0 chr13 88345120 88345202 -31399696 - MIR SINE MIR -136 126 45 1083 220 155 60 chr13 88345206 88345625 -31399273 + MLT1C LTR MaLR 9 467 0 21 0 0 0 chr13 88346110 88346131 -31398767 + AT_rich Low_complexity Low_complexity 1 21 0 1912 146 143 8 chr13 88346143 88346520 -31398378 - MSTA LTR MaLR 0 428 1 1469 188 41 3 chr13 88347564 88347904 -31396994 + L1MA7 LINE L1 5923 6275 -16 297 348 78 9 chr13 88347962 88348077 -31396821 - L2 LINE L2 -19 3294 3172 607 215 2 48 chr13 88348122 88348359 -31396539 + L1MC3 LINE L1 7520 7841 -101 686 341 175 37 chr13 88348853 88349749 -31395149 + L2 LINE L2 1117 2136 -1178 836 37 0 9 chr13 88350337 88350445 -31394453 + L1PA5 LINE L1 6045 6151 -3 2807 10 0 0 chr13 88350488 88350797 -31394101 - AluYa5 SINE Alu -2 309 1 256 123 0 35 chr13 88350881 88350938 -31393960 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2392 77 0 0 chr13 88351040 88351338 -31393560 + AluSc SINE Alu 1 298 -11 24 0 0 0 chr13 88352669 88352693 -31392205 + AT_rich Low_complexity Low_complexity 1 24 0 415 252 191 0 chr13 88352936 88353083 -31391815 - LTR50 LTR ERVL -190 605 431 527 294 123 58 chr13 88353090 88353576 -31391322 + MLT1H1 LTR MaLR 38 555 0 * 864 247 55 5 chr13 88353576 88353788 -31391110 - LTR50 LTR ERVL -572 223 1 32 43 0 0 chr13 88353823 88353869 -31391029 + AT_rich Low_complexity Low_complexity 1 46 0 1005 141 0 0 chr13 88354335 88354484 -31390414 + AluSg/x SINE Alu 135 283 -29 196 29 0 57 chr13 88354494 88354529 -31390369 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1350 123 45 29 chr13 88354573 88354817 -31390081 + THE1C LTR MaLR 128 375 0 8223 134 74 37 chr13 88354817 88356340 -31388558 + THE1C-int LTR MaLR 1 1580 0 1467 128 94 117 chr13 88356340 88356635 -31388263 + THE1C LTR MaLR 1 301 -74 1841 154 0 0 chr13 88356635 88356915 -31387983 + AluSx SINE Alu 1 280 -32 1467 128 94 117 chr13 88356915 88356935 -31387963 + THE1C LTR MaLR 301 320 -55 189 0 0 0 chr13 88356935 88356956 -31387942 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 1467 128 94 117 chr13 88356956 88357023 -31387875 + THE1C LTR MaLR 320 375 0 22 0 0 0 chr13 88357053 88357075 -31387823 + AT_rich Low_complexity Low_complexity 1 22 0 252 303 53 72 chr13 88357394 88357546 -31387352 - MIR SINE MIR -106 156 8 2066 117 4 0 chr13 88359695 88360105 -31384793 - AluSx SINE Alu 0 411 1 2178 94 7 0 chr13 88361221 88361507 -31383391 + AluSc SINE Alu 1 288 -21 27 73 0 0 chr13 88361562 88361617 -31383281 + AT_rich Low_complexity Low_complexity 1 55 0 2212 99 10 0 chr13 88361848 88362141 -31382757 - AluSq SINE Alu -17 296 1 31 44 0 0 chr13 88362360 88362405 -31382493 + AT_rich Low_complexity Low_complexity 1 45 0 231 382 64 21 chr13 88362662 88362895 -31382003 + HAL1 LINE L1 381 623 -1884 1343 244 102 13 chr13 88363027 88363400 -31381498 + MER45B DNA AcHobo 4 409 -631 543 214 0 0 chr13 88363408 88363511 -31381387 + AluJb SINE Alu 2 104 -208 1913 228 90 27 chr13 88363562 88364149 -31380749 + MER45B DNA AcHobo 411 1034 -6 223 318 9 84 chr13 88364463 88364570 -31380328 + MER5A DNA MER1_type 11 109 -80 240 122 0 0 chr13 88365741 88365782 -31379116 + (CAA)n Simple_repeat Simple_repeat 2 42 0 200 86 29 0 chr13 88367629 88367664 -31377234 + (TGG)n Simple_repeat Simple_repeat 3 38 0 292 333 43 22 chr13 88367919 88368057 -31376841 + MIR SINE MIR 37 177 -85 1623 206 24 12 chr13 88368772 88369112 -31375786 + MER2 DNA MER2_type 1 344 0 2698 235 100 17 chr13 88370010 88370064 -31374834 + L1MC2 LINE L1 4111 4159 -2185 530 29 15 0 chr13 88370064 88370132 -31374766 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2698 235 100 17 chr13 88370132 88371576 -31373322 + L1MC2 LINE L1 4159 5748 -596 509 147 22 73 chr13 88371577 88371713 -31373185 + MLT2B1 LTR ERVL 1 129 -391 284 130 43 0 chr13 88371769 88371815 -31373083 + MLT2D LTR ERVL 367 414 0 1704 215 19 18 chr13 88371816 88372327 -31372571 + L1MC2 LINE L1 5746 6344 0 25 0 0 0 chr13 88372332 88372357 -31372541 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr13 88372395 88372422 -31372476 + AT_rich Low_complexity Low_complexity 1 27 0 2064 118 0 0 chr13 88373044 88373348 -31371550 + AluSx SINE Alu 3 306 0 738 255 55 25 chr13 88373864 88374099 -31370799 + MIR SINE MIR 2 243 -19 1492 202 7 3 chr13 88374832 88375134 -31369764 - AluJo SINE Alu 0 304 2 276 340 33 27 chr13 88377332 88377482 -31367416 + L2 LINE L2 2349 2499 -815 346 312 44 77 chr13 88377568 88377930 -31366968 + L1MEd LINE L1 722 1071 -5048 23 0 0 0 chr13 88378285 88378308 -31366590 + AT_rich Low_complexity Low_complexity 1 23 0 567 356 61 26 chr13 88379493 88379953 -31364945 + HERVL LTR ERVL 1128 1675 -3423 503 224 0 88 chr13 88379975 88380122 -31364776 + L1MA10 LINE L1 6119 6252 -82 252 167 0 37 chr13 88380236 88380290 -31364608 + L1MA10 LINE L1 6273 6324 -10 1152 357 57 17 chr13 88380485 88381555 -31363343 + HERVL LTR ERVL 2004 3077 -2577 21 0 0 0 chr13 88382448 88382469 -31362429 + AT_rich Low_complexity Low_complexity 1 21 0 1032 63 0 0 chr13 88382626 88382768 -31362130 + L1P3 LINE L1 5301 5442 -712 298 320 56 16 chr13 88384034 88384159 -31360739 + LTR33 LTR ERVL 47 176 -345 296 351 111 14 chr13 88384254 88384462 -31360436 + LTR33 LTR ERVL 292 519 -2 196 158 35 0 chr13 88385931 88385988 -31358910 + (TA)n Simple_repeat Simple_repeat 1 59 0 226 284 69 43 chr13 88387098 88387214 -31357684 + L2 LINE L2 2862 2980 -333 1991 132 7 0 chr13 88387271 88387560 -31357338 + AluSx SINE Alu 1 291 -21 4437 93 38 1 chr13 88387561 88388216 -31356682 - L1PA7 LINE L1 -1025 5121 4443 6765 57 17 2 chr13 88388216 88389226 -31355672 + L1PA7 LINE L1 5132 6154 0 2465 68 0 3 chr13 88389316 88389627 -31355271 - AluY SINE Alu -1 310 1 213 406 16 8 chr13 88389629 88389757 -31355141 + L2 LINE L2 3144 3272 0 752 218 34 11 chr13 88390201 88390380 -31354518 - L1MB1 LINE L1 0 6168 5986 * 1567 163 11 25 chr13 88390377 88390543 -31354355 + L1MB1 LINE L1 5666 5828 -361 1243 227 104 15 chr13 88390543 88390878 -31354020 + MLT1A1 LTR MaLR 1 365 0 1567 163 11 25 chr13 88390878 88390993 -31353905 + L1MB1 LINE L1 5828 5943 -246 21 0 0 0 chr13 88391820 88391841 -31353057 + AT_rich Low_complexity Low_complexity 1 21 0 561 75 11 21 chr13 88391937 88392031 -31352867 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 291 284 12 0 chr13 88393699 88393780 -31351118 + (TATATG)n Simple_repeat Simple_repeat 4 85 0 23 0 0 0 chr13 88394515 88394538 -31350360 + AT_rich Low_complexity Low_complexity 1 23 0 1525 209 85 29 chr13 88395739 88396368 -31348530 - MER39 LTR ERV1 -5 702 1 417 165 19 19 chr13 88397261 88397364 -31347534 + CT-rich Low_complexity Low_complexity 2 104 0 2303 189 29 22 chr13 88398746 88399195 -31345703 + MER66A LTR ERV1 27 478 0 543 56 0 0 chr13 88399195 88399208 -31345690 + (CA)n Simple_repeat Simple_repeat 1 84 0 543 56 0 0 chr13 88399208 88399279 -31345619 + (CA)n Simple_repeat Simple_repeat 2 72 0 18299 157 27 15 chr13 88401145 88404532 -31340366 + L1PA15 LINE L1 1 3345 -3522 2045 150 3 0 chr13 88404532 88404839 -31340059 + AluSx SINE Alu 1 308 -4 18299 157 27 15 chr13 88404839 88407894 -31337004 + L1PA15 LINE L1 3345 6361 -506 261 98 0 0 chr13 88407894 88407935 -31336963 + (CA)n Simple_repeat Simple_repeat 2 42 0 18299 157 27 15 chr13 88407935 88408010 -31336888 + L1PA15 LINE L1 6361 6434 -433 1670 51 0 14 chr13 88408010 88408227 -31336671 - AluY SINE Alu -14 297 84 18299 157 27 15 chr13 88408227 88408523 -31336375 + L1PA15 LINE L1 6434 6867 0 21 71 0 0 chr13 88408693 88408735 -31336163 + AT_rich Low_complexity Low_complexity 1 42 0 215 305 71 57 chr13 88408953 88409094 -31335804 + L2 LINE L2 2672 2814 -500 901 215 19 57 chr13 88409116 88409478 -31335420 + MER31B LTR ERV1 77 485 0 748 264 14 18 chr13 88409917 88410137 -31334761 - LTR40b LTR ERVL 0 462 244 24 0 0 0 chr13 88410308 88410332 -31334566 + AT_rich Low_complexity Low_complexity 1 24 0 409 233 134 42 chr13 88411588 88411871 -31333027 + L1ME LINE L1 844 1152 -5053 2300 57 0 0 chr13 88411989 88412297 -31332601 + AluY SINE Alu 1 308 0 397 331 51 24 chr13 88412378 88412789 -31332109 + L1ME LINE L1 1389 1810 -4586 8085 190 45 7 chr13 88414708 88416480 -31328418 - L1 LINE L1 -1006 5140 3303 21 36 0 0 chr13 88416700 88416728 -31328170 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr13 88417382 88417417 -31327481 + AT_rich Low_complexity Low_complexity 1 35 0 2006 199 38 2 chr13 88418042 88418459 -31326439 + MSTB1 LTR MaLR 1 432 0 203 56 56 0 chr13 88418537 88418573 -31326325 + A-rich Low_complexity Low_complexity 2 39 0 797 305 16 16 chr13 88419026 88419275 -31325623 + MIR SINE MIR 9 257 -5 45 62 0 0 chr13 88419469 88419549 -31325349 + AT_rich Low_complexity Low_complexity 1 80 0 226 102 0 41 chr13 88420274 88420323 -31324575 + (TA)n Simple_repeat Simple_repeat 2 48 0 291 103 26 51 chr13 88422468 88422585 -31322313 + (TA)n Simple_repeat Simple_repeat 2 115 0 1834 153 142 16 chr13 88422790 88423170 -31321728 - MSTA LTR MaLR 0 428 1 8748 151 16 37 chr13 88423170 88424783 -31320115 - MSTA-int LTR MaLR 0 1580 3 1669 163 124 45 chr13 88424785 88425165 -31319733 - MSTA LTR MaLR 0 428 19 1703 146 23 71 chr13 88426003 88426312 -31318586 - AluSx SINE Alu -18 294 1 23 54 0 0 chr13 88428151 88428188 -31316710 + AT_rich Low_complexity Low_complexity 1 37 0 490 273 91 19 chr13 88428553 88428707 -31316191 + MER5B DNA MER1_type 7 171 -7 500 114 76 0 chr13 88429683 88429762 -31315136 - LTR18A LTR ERVL 0 357 273 2355 120 24 90 chr13 88429762 88430230 -31314668 - HERVL18 LTR ERVL -1000 5047 4611 191 35 0 35 chr13 88430394 88430423 -31314475 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1928 117 0 4 chr13 88430512 88430785 -31314113 - AluSx SINE Alu -18 294 23 180 0 0 0 chr13 88431352 88431372 -31313526 + (TAA)n Simple_repeat Simple_repeat 2 21 0 23 68 0 0 chr13 88431785 88431829 -31313069 + AT_rich Low_complexity Low_complexity 1 44 0 2792 117 16 0 chr13 88433091 88433623 -31311275 - L1M1 LINE L1 -620 5683 5146 2995 138 53 4 chr13 88433623 88434171 -31310727 + L1MA4A LINE L1 5719 6296 -7 30 83 0 0 chr13 88434197 88434269 -31310629 + AT_rich Low_complexity Low_complexity 1 72 0 28 48 0 0 chr13 88434352 88434394 -31310504 + AT_rich Low_complexity Low_complexity 1 42 0 228 317 89 20 chr13 88434412 88434513 -31310385 + L2 LINE L2 3197 3304 -9 438 230 8 10 chr13 88434571 88434699 -31310199 - L1ME LINE L1 -323 5798 5672 27 49 0 0 chr13 88436454 88436495 -31308403 + AT_rich Low_complexity Low_complexity 1 41 0 180 77 0 0 chr13 88437086 88437112 -31307786 + (TC)n Simple_repeat Simple_repeat 1 26 0 285 29 0 0 chr13 88437112 88437146 -31307752 + (TA)n Simple_repeat Simple_repeat 1 34 0 7654 27 0 0 chr13 88437319 88438381 -31306517 + L1PA4 LINE L1 5093 6155 0 1223 285 108 38 chr13 88438634 88439188 -31305710 + MLT1E LTR MaLR 1 593 0 250 339 35 35 chr13 88439211 88439326 -31305572 - L2 LINE L2 0 3272 3158 22 0 0 0 chr13 88439456 88439478 -31305420 + AT_rich Low_complexity Low_complexity 1 22 0 1389 220 0 20 chr13 88439478 88439782 -31305116 - AluJo SINE Alu -14 298 1 270 0 0 0 chr13 88439785 88439815 -31305083 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 471 233 68 7 chr13 88440120 88440266 -31304632 - L1MC4 LINE L1 -787 7255 7101 30 59 0 0 chr13 88440497 88440548 -31304350 + AT_rich Low_complexity Low_complexity 1 51 0 332 281 41 27 chr13 88440674 88440820 -31304078 - L1MC4a LINE L1 -1045 6763 6616 23 0 0 0 chr13 88441365 88441388 -31303510 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr13 88441537 88441580 -31303318 + AT_rich Low_complexity Low_complexity 1 43 0 2262 113 3 0 chr13 88441608 88441917 -31302981 - AluSq SINE Alu -3 310 1 926 190 56 30 chr13 88442037 88442269 -31302629 - L1MB7 LINE L1 -6 6178 5941 2809 172 16 24 chr13 88442614 88442812 -31302086 - L1MA6 LINE L1 -10 6290 6092 1704 175 21 29 chr13 88442812 88443190 -31301708 + THE1C LTR MaLR 1 375 0 2809 172 16 24 chr13 88443190 88443573 -31301325 - L1MA6 LINE L1 -208 6092 5714 302 215 21 3 chr13 88444000 88444088 -31300810 + HsTC2 DNA Tc2 29 1836 -62 2383 133 19 0 chr13 88444192 88444560 -31300338 + THE1C LTR MaLR 1 375 0 350 274 18 41 chr13 88444967 88445186 -31299712 + L1MB8 LINE L1 5789 6002 -176 * 1296 167 37 0 chr13 88445021 88445266 -31299632 + L1MC1 LINE L1 5836 6089 -244 362 98 0 0 chr13 88445285 88445336 -31299562 + L1MC1 LINE L1 6265 6315 -18 26 0 0 0 chr13 88445483 88445509 -31299389 + AT_rich Low_complexity Low_complexity 1 26 0 186 103 0 0 chr13 88446741 88446770 -31298128 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 369 0 0 0 chr13 88447657 88447698 -31297200 + (CA)n Simple_repeat Simple_repeat 1 41 0 1321 253 98 60 chr13 88448082 88448663 -31296235 - Charlie1a DNA MER1_type -852 603 1 313 341 17 23 chr13 88448917 88449090 -31295808 - MLT1I LTR MaLR -189 220 49 201 352 68 12 chr13 88449306 88449468 -31295430 - L2 LINE L2 -1339 1975 1805 2115 113 0 7 chr13 88450564 88450864 -31294034 - AluSq SINE Alu -15 298 1 21 0 0 0 chr13 88450954 88450975 -31293923 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 88451023 88451051 -31293847 + AT_rich Low_complexity Low_complexity 1 28 0 244 266 51 0 chr13 88451362 88451441 -31293457 + MIR SINE MIR 180 262 0 373 303 19 26 chr13 88452222 88452377 -31292521 + HAL1 LINE L1 793 946 -1561 239 213 53 13 chr13 88452429 88452504 -31292394 - MLT1I LTR MaLR 0 409 332 2118 89 0 0 chr13 88452509 88452778 -31292120 + AluSc SINE Alu 21 289 -20 282 148 0 0 chr13 88452779 88452833 -31292065 + (TATG)n Simple_repeat Simple_repeat 2 55 0 293 315 18 27 chr13 88453045 88453156 -31291742 - MLT1I LTR MaLR -262 147 38 730 308 138 45 chr13 88455839 88456287 -31288611 - MLT1H1 LTR MaLR -1 554 65 706 247 37 37 chr13 88457797 88458097 -31286801 - L1MB8 LINE L1 -32 6146 5847 467 212 103 48 chr13 88458100 88458246 -31286652 - L1MB8 LINE L1 -463 5721 5568 308 198 253 0 chr13 88458248 88458339 -31286559 - L1MB8 LINE L1 -694 5470 5357 180 0 0 0 chr13 88458983 88459003 -31285895 + (A)n Simple_repeat Simple_repeat 1 20 0 261 293 147 10 chr13 88459387 88459585 -31285313 + L1MEd LINE L1 592 816 -5303 311 301 20 46 chr13 88459798 88459893 -31285005 - L1MEd LINE L1 -5967 152 61 2292 130 49 47 chr13 88459893 88460088 -31284810 + MSTB1 LTR MaLR 1 194 -238 1475 130 15 65 chr13 88460088 88460349 -31284549 + AluSq SINE Alu 1 248 -65 2292 130 49 47 chr13 88460349 88460583 -31284315 + MSTB1 LTR MaLR 194 431 -1 311 301 20 46 chr13 88460583 88460640 -31284258 - L1MEd LINE L1 -6058 61 4 382 285 22 7 chr13 88460906 88461043 -31283855 + L1ME LINE L1 5557 5695 -475 24 100 0 0 chr13 88461516 88461596 -31283302 + AT_rich Low_complexity Low_complexity 1 80 0 1869 126 61 0 chr13 88461675 88461953 -31282945 + AluSx SINE Alu 2 296 -16 825 189 49 0 chr13 88462253 88462417 -31282481 - FRAM SINE Alu -7 169 1 33 0 0 0 chr13 88462475 88462508 -31282390 + AT_rich Low_complexity Low_complexity 1 33 0 447 309 47 26 chr13 88462812 88463045 -31281853 - MLT1J1 LTR MaLR -192 254 17 636 336 31 8 chr13 88463324 88463705 -31281193 + L1ME3A LINE L1 5548 5937 -233 34 65 0 0 chr13 88463910 88463972 -31280926 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr13 88464242 88464272 -31280626 + AT_rich Low_complexity Low_complexity 1 30 0 1970 92 85 4 chr13 88464797 88465078 -31279820 - AluY SINE Alu -7 304 1 21 0 0 0 chr13 88465824 88465845 -31279053 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 88465908 88465930 -31278968 + AT_rich Low_complexity Low_complexity 1 22 0 191 344 52 10 chr13 88466335 88466431 -31278467 + L2 LINE L2 1374 1473 -1841 12347 160 41 15 chr13 88466628 88468984 -31275914 + Tigger1 DNA MER2_type 1 2418 0 322 311 50 17 chr13 88469068 88469187 -31275711 + L2 LINE L2 2214 2336 -978 190 301 0 54 chr13 88469465 88469558 -31275340 - MIR SINE MIR -100 162 75 217 309 92 33 chr13 88470115 88470267 -31274631 - MIR SINE MIR -14 248 88 25 51 0 0 chr13 88471597 88471636 -31273262 + AT_rich Low_complexity Low_complexity 1 39 0 195 186 0 0 chr13 88473725 88473768 -31271130 + (CA)n Simple_repeat Simple_repeat 2 44 0 206 222 0 0 chr13 88473770 88473806 -31271092 + polypurine Low_complexity Low_complexity 1 36 0 312 27 0 0 chr13 88474015 88474052 -31270846 + (TG)n Simple_repeat Simple_repeat 2 38 0 345 319 85 40 chr13 88474780 88475028 -31269870 + L3b LINE CR1 1204 1462 -121 2733 35 0 3 chr13 88476223 88476562 -31268336 - L1PA5 LINE L1 -1316 4830 4493 * 3827 52 9 49 chr13 88476560 88477116 -31267782 + L1PA5 LINE L1 4831 5364 -782 4582 54 7 8 chr13 88477217 88477806 -31267092 + L1PA5 LINE L1 5563 6150 -4 23 0 0 0 chr13 88477806 88477829 -31267069 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr13 88477877 88477917 -31266981 + AT_rich Low_complexity Low_complexity 1 40 0 965 170 203 29 chr13 88477951 88478192 -31266706 + MSTA LTR MaLR 1 283 -145 1206 132 0 0 chr13 88478193 88478360 -31266538 - AluSx SINE Alu -144 168 2 209 322 58 0 chr13 88478362 88478449 -31266449 - L2 LINE L2 -988 2326 2235 23 54 0 0 chr13 88478473 88478510 -31266388 + AT_rich Low_complexity Low_complexity 1 37 0 239 385 28 0 chr13 88478564 88478673 -31266225 + MIR3 SINE MIR 61 172 -36 208 388 25 45 chr13 88479285 88479527 -31265371 - L2 LINE L2 -2352 962 726 312 340 72 0 chr13 88480604 88480757 -31264141 - L1MEd LINE L1 -4969 1150 987 260 197 0 14 chr13 88480764 88480835 -31264063 + (TA)n Simple_repeat Simple_repeat 1 70 0 279 306 0 0 chr13 88480855 88480940 -31263958 - L1MC4 LINE L1 -1344 6698 6614 180 179 0 0 chr13 88480952 88480991 -31263907 + (TA)n Simple_repeat Simple_repeat 1 39 0 2012 110 35 0 chr13 88481243 88481555 -31263343 + AluSc SINE Alu 1 309 0 256 235 118 29 chr13 88482115 88482217 -31262681 + MLT1I LTR MaLR 274 384 -25 2137 83 10 3 chr13 88482530 88482832 -31262066 + AluY SINE Alu 1 304 -7 1479 202 48 70 chr13 88483068 88483521 -31261377 + MLT1B LTR MaLR 3 467 0 749 340 75 26 chr13 88483523 88483952 -31260946 + L2 LINE L2 2309 2758 -556 201 213 0 0 chr13 88484396 88484443 -31260455 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 979 127 0 0 chr13 88486625 88486759 -31258139 + AluSg SINE Alu 1 134 -176 581 118 0 0 chr13 88486859 88486944 -31257954 + AluSg/x SINE Alu 194 278 -32 852 39 0 0 chr13 88486946 88487050 -31257848 + (GAA)n Simple_repeat Simple_repeat 2 105 0 1083 302 62 13 chr13 88487067 88487454 -31257444 + MLT1E2 LTR MaLR 221 626 0 1383 165 82 70 chr13 88487499 88487827 -31257071 - MER7A DNA MER2_type -2 344 15 202 360 79 0 chr13 88487830 88487919 -31256979 + L2 LINE L2 3177 3272 0 361 300 0 0 chr13 88487999 88488099 -31256799 - MIR SINE MIR -13 249 150 227 286 0 0 chr13 88488894 88488943 -31255955 - MER91 DNA MER1_type -79 61 13 1232 182 91 38 chr13 88489591 88489855 -31255043 + AluJo SINE Alu 1 278 -34 4501 223 54 1 chr13 88489962 88490885 -31254013 + L1PA13 LINE L1 1 972 -5815 * 14153 196 12 9 chr13 88490881 88493806 -31251092 + L1PA13 LINE L1 2511 5442 -1355 5098 123 32 7 chr13 88493807 88494618 -31250280 + L1PA13 LINE L1 5984 6814 0 678 179 11 84 chr13 88496440 88496463 -31248435 - L1MA10 LINE L1 0 6334 6312 1126 247 18 68 chr13 88496463 88496735 -31248163 - L1ME1 LINE L1 -6 6160 5919 2020 133 0 25 chr13 88496735 88497051 -31247847 + AluSx SINE Alu 1 308 -4 1126 247 18 68 chr13 88497051 88497235 -31247663 - L1ME1 LINE L1 -247 5919 5727 421 233 99 9 chr13 88497263 88497410 -31247488 - L1ME1 LINE L1 -698 5453 5321 2176 198 28 12 chr13 88497515 88498015 -31246883 - L1MC3 LINE L1 -1 7784 7277 2154 72 28 0 chr13 88498648 88498939 -31245959 - L1PA8 LINE L1 -3 6169 5871 485 188 89 0 chr13 88498940 88499052 -31245846 + pTR5 LTR ERV1 741 862 -1576 26 64 0 0 chr13 88499212 88499259 -31245639 + GC_rich Low_complexity Low_complexity 1 47 0 3986 143 16 33 chr13 88499344 88500044 -31244854 + LTR12 LTR ERV1 1 688 0 195 292 42 67 chr13 88500071 88500191 -31244707 - L3 LINE CR1 -29 1548 1432 321 237 110 34 chr13 88500210 88500328 -31244570 + L2 LINE L2 2242 2368 -946 189 94 0 0 chr13 88500329 88500361 -31244537 + (TG)n Simple_repeat Simple_repeat 1 32 0 527 332 91 0 chr13 88501725 88501945 -31242953 - MIR SINE MIR -3 259 20 939 346 60 33 chr13 88502057 88502640 -31242258 - MER115 DNA AcHobo 0 693 95 37 52 0 0 chr13 88503359 88503417 -31241481 + AT_rich Low_complexity Low_complexity 1 58 0 244 298 96 61 chr13 88503766 88503964 -31240934 + MLT1L LTR MaLR 405 609 -6 2238 106 0 3 chr13 88504297 88504599 -31240299 + AluSq SINE Alu 1 301 -12 3769 68 6 8 chr13 88505018 88505504 -31239394 + SVA Other Other 899 1383 -3 341 292 50 17 chr13 88505561 88505681 -31239217 - Charlie2 DNA MER1_type -2730 132 9 255 278 191 0 chr13 88505691 88505806 -31239092 + MIR SINE MIR 112 248 -14 259 299 77 62 chr13 88505922 88506246 -31238652 + L1MEd LINE L1 895 1223 -4896 352 336 16 8 chr13 88507450 88507572 -31237326 - L2 LINE L2 -9 3304 3182 21 0 0 0 chr13 88507836 88507857 -31237041 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 88508030 88508051 -31236847 + AT_rich Low_complexity Low_complexity 1 21 0 34 24 0 0 chr13 88508935 88508976 -31235922 + AT_rich Low_complexity Low_complexity 1 41 0 433 111 0 0 chr13 88511177 88511240 -31233658 + AluS SINE Alu 1 63 -255 275 70 0 23 chr13 88511242 88511285 -31233613 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 249 108 0 0 chr13 88511678 88511715 -31233183 + (A)n Simple_repeat Simple_repeat 1 37 0 29 28 0 0 chr13 88512244 88512280 -31232618 + AT_rich Low_complexity Low_complexity 1 36 0 498 331 17 28 chr13 88513572 88513750 -31231148 - MIR3 SINE MIR 0 208 33 1653 256 57 86 chr13 88514123 88514787 -31230111 + MER77 LTR ERV1 57 654 -5 2169 118 0 6 chr13 88515581 88515894 -31229004 + AluSq SINE Alu 1 311 -2 1903 178 6 6 chr13 88515899 88516259 -31228639 + L1PA16 LINE L1 5800 6159 -7 210 206 0 55 chr13 88516263 88516336 -31228562 + A-rich Low_complexity Low_complexity 4 72 0 207 0 0 0 chr13 88516715 88516738 -31228160 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2470 71 0 0 chr13 88516953 88517264 -31227634 + AluY SINE Alu 1 311 0 485 322 124 4 chr13 88517423 88517665 -31227233 - L2 LINE L2 -1176 2138 1868 1648 360 116 16 chr13 88517670 88518966 -31225932 - L2 LINE L2 -1794 1520 96 36 0 0 0 chr13 88519163 88519199 -31225699 + AT_rich Low_complexity Low_complexity 1 36 0 213 261 0 0 chr13 88519247 88519293 -31225605 + (TA)n Simple_repeat Simple_repeat 1 46 0 210 95 24 24 chr13 88520030 88520072 -31224826 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr13 88521571 88521596 -31223302 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 88521919 88521943 -31222955 + AT_rich Low_complexity Low_complexity 1 24 0 433 124 11 11 chr13 88522288 88522377 -31222521 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 304 279 79 64 chr13 88522412 88522692 -31222206 - L1ME LINE L1 -354 5808 5525 22 80 0 0 chr13 88523103 88523153 -31221745 + AT_rich Low_complexity Low_complexity 1 50 0 7229 228 23 14 chr13 88523428 88525053 -31219845 - L1PA12 LINE L1 -5074 2510 91 5046 186 116 2 chr13 88525052 88526162 -31218736 + L1PA12 LINE L1 2441 3677 -2469 * 5729 157 96 1 chr13 88526162 88527928 -31216970 + L1PA12 LINE L1 4313 6164 -4 273 183 17 17 chr13 88527950 88528010 -31216888 - MER53 DNA DNA -129 60 1 596 59 21 64 chr13 88528035 88528222 -31216676 + (TA)n Simple_repeat Simple_repeat 2 180 0 246 86 40 80 chr13 88528254 88528429 -31216469 + (TA)n Simple_repeat Simple_repeat 2 169 0 215 182 79 0 chr13 88528438 88528603 -31216295 + (TATAG)n Simple_repeat Simple_repeat 2 179 0 652 227 0 0 chr13 88528711 88528830 -31216068 - MER74C LTR ERVL -145 315 197 2130 205 27 8 chr13 88528875 88529353 -31215545 - L1MA10 LINE L1 -76 6258 5772 329 240 115 0 chr13 88529360 88529464 -31215434 + MER53 DNA DNA 74 189 0 431 299 170 26 chr13 88529659 88530000 -31214898 - L1MEd LINE L1 -4881 1238 849 2396 70 7 0 chr13 88530055 88530353 -31214545 - AluY SINE Alu -11 300 1 204 135 27 0 chr13 88530475 88530512 -31214386 + CT-rich Low_complexity Low_complexity 2 39 0 665 135 48 0 chr13 88530801 88530927 -31213971 - L1MB3 LINE L1 -1 6182 6051 1286 158 48 63 chr13 88531017 88531353 -31213545 + THE1C LTR MaLR 1 364 0 575 292 12 0 chr13 88532039 88532207 -31212691 + MER82 DNA MER2_type 15 184 -469 823 158 36 207 chr13 88532324 88532707 -31212191 - LTR1B LTR ERV1 -69 757 441 1415 135 13 16 chr13 88532707 88533005 -31211893 + THE1B LTR MaLR 1 375 0 1148 250 57 44 chr13 88533010 88533446 -31211452 - LTR1 LTR ERV1 -341 444 3 2019 234 35 7 chr13 88533449 88533901 -31210997 + MER82 DNA MER2_type 189 653 0 29 60 0 0 chr13 88534046 88534096 -31210802 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr13 88534199 88534235 -31210663 + AT_rich Low_complexity Low_complexity 1 36 0 213 167 24 0 chr13 88534286 88534328 -31210570 + (TA)n Simple_repeat Simple_repeat 2 44 0 1515 274 34 47 chr13 88536951 88537569 -31207329 + MER90 LTR ERV1 5 614 0 24 67 0 0 chr13 88538167 88538212 -31206686 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr13 88538971 88538996 -31205902 + AT_rich Low_complexity Low_complexity 1 25 0 1759 140 60 7 chr13 88538999 88539284 -31205614 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr13 88539285 88539308 -31205590 + (CA)n Simple_repeat Simple_repeat 2 24 0 281 263 0 30 chr13 88539322 88539421 -31205477 + L2 LINE L2 3004 3099 -173 201 151 38 19 chr13 88539516 88539569 -31205329 + A-rich Low_complexity Low_complexity 2 55 0 473 322 124 36 chr13 88540106 88540494 -31204404 - L2 LINE L2 -5 3308 2887 1035 89 0 0 chr13 88540805 88540940 -31203958 + AluSq SINE Alu 59 193 -120 2134 120 0 7 chr13 88542914 88543214 -31201684 - AluSx SINE Alu -14 298 1 718 259 24 0 chr13 88543444 88543614 -31201284 + MER58B DNA MER1_type 168 341 0 207 0 0 0 chr13 88543903 88543926 -31200972 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 26 88 0 0 chr13 88544204 88544272 -31200626 + AT_rich Low_complexity Low_complexity 1 68 0 2632 10 0 20 chr13 88544273 88544578 -31200320 + AluYa5 SINE Alu 1 299 -12 194 194 0 28 chr13 88544603 88544639 -31200259 - L3 LINE CR1 -49 1528 1494 481 313 61 20 chr13 88544734 88544932 -31199966 - MIR SINE MIR 0 262 57 23 0 0 0 chr13 88545829 88545852 -31199046 + AT_rich Low_complexity Low_complexity 1 23 0 6230 201 164 21 chr13 88546860 88548395 -31196503 + MER52A LTR ERV1 1 1755 0 183 244 111 67 chr13 88549145 88549235 -31195663 - MIR SINE MIR -3 259 166 294 285 85 42 chr13 88549258 88549423 -31195475 + L2 LINE L2 2812 2983 -330 24 32 0 0 chr13 88549598 88549629 -31195269 + AT_rich Low_complexity Low_complexity 1 31 0 236 366 49 8 chr13 88549629 88549752 -31195146 - MIR SINE MIR -89 173 46 25 51 0 0 chr13 88551333 88551372 -31193526 + AT_rich Low_complexity Low_complexity 1 39 0 280 221 126 11 chr13 88553309 88553404 -31191494 - MIR3 SINE MIR -36 172 67 498 188 0 0 chr13 88553490 88553591 -31191307 + (TG)n Simple_repeat Simple_repeat 2 102 0 262 338 82 82 chr13 88553933 88555098 -31189800 - L2 LINE L2 -1151 2163 999 252 389 24 12 chr13 88555249 88555416 -31189482 + L2 LINE L2 2910 3078 -194 22 70 0 0 chr13 88555733 88555776 -31189122 + AT_rich Low_complexity Low_complexity 1 43 0 198 398 48 24 chr13 88555779 88555862 -31189036 + L2 LINE L2 3161 3245 -27 284 0 0 27 chr13 88556705 88556742 -31188156 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2103 118 3 0 chr13 88557757 88558053 -31186845 + AluY SINE Alu 1 297 -14 1486 201 49 21 chr13 88558958 88559286 -31185612 + MLT1A1 LTR MaLR 1 337 -28 257 316 166 42 chr13 88560475 88560994 -31183904 - L3 LINE CR1 -373 1204 622 204 331 63 31 chr13 88561054 88561181 -31183717 - L3 LINE CR1 -1083 494 364 332 250 65 0 chr13 88561659 88561767 -31183131 - L1ME LINE L1 -5235 835 721 294 87 0 0 chr13 88563000 88563046 -31181852 + (CA)n Simple_repeat Simple_repeat 1 46 0 298 342 139 54 chr13 88563055 88563371 -31181527 - MLT1J LTR MaLR -166 345 3 215 103 26 0 chr13 88564185 88564224 -31180674 + (TA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr13 88564342 88564364 -31180534 + AT_rich Low_complexity Low_complexity 1 22 0 452 245 136 14 chr13 88565207 88565354 -31179544 - LTR33 LTR ERVL -24 497 333 248 353 87 42 chr13 88566126 88566438 -31178460 + L2 LINE L2 719 1044 -2270 25 31 0 0 chr13 88566593 88566625 -31178273 + AT_rich Low_complexity Low_complexity 1 32 0 2126 179 93 101 chr13 88566883 88567443 -31177455 + LTR8A LTR ERV1 1 558 -169 1996 132 7 0 chr13 88567443 88567749 -31177149 + AluSq SINE Alu 1 308 0 2126 179 93 101 chr13 88567749 88567917 -31176981 + LTR8A LTR ERV1 558 726 -1 2195 137 114 8 chr13 88567952 88568338 -31176560 - L1PA16 LINE L1 -13 6153 5727 1619 157 56 13 chr13 88568526 88568860 -31176038 + LTR34 LTR ERV1 271 697 -2 22 0 0 0 chr13 88568915 88568937 -31175961 + AT_rich Low_complexity Low_complexity 1 22 0 363 200 25 0 chr13 88569016 88569096 -31175802 - L1MD3 LINE L1 -14 7981 7900 * 1406 276 89 79 chr13 88569089 88570383 -31174515 - L1MC4a LINE L1 -656 7152 5846 206 288 113 0 chr13 88570790 88570870 -31174028 + L2 LINE L2 1825 1913 -1401 726 343 25 3 chr13 88570907 88571222 -31173676 + L2 LINE L2 2019 2340 -974 3812 141 19 59 chr13 88571900 88572658 -31172240 + LTR8A LTR ERV1 1 727 0 2010 142 56 11 chr13 88572709 88573068 -31171830 + THE1C LTR MaLR 1 375 0 9078 133 36 38 chr13 88573068 88574651 -31170247 + THE1C-int LTR MaLR 1 1580 0 1834 148 74 14 chr13 88574651 88575002 -31169896 + THE1C LTR MaLR 1 372 -3 449 239 184 32 chr13 88575314 88575532 -31169366 - L1MD1 LINE L1 -1 6241 5991 2513 117 41 101 chr13 88575705 88576543 -31168355 + LTR12 LTR ERV1 81 714 0 1111 103 0 7 chr13 88576619 88576774 -31168124 + AluYa5 SINE Alu 150 303 -8 21 0 0 0 chr13 88576831 88576852 -31168046 + AT_rich Low_complexity Low_complexity 1 21 0 1777 127 50 10 chr13 88577249 88577548 -31167350 + AluSx SINE Alu 1 311 -1 213 254 164 25 chr13 88577563 88577685 -31167213 + MIR SINE MIR 1 139 -123 21 57 0 0 chr13 88578771 88578806 -31166092 + AT_rich Low_complexity Low_complexity 1 35 0 432 247 60 22 chr13 88579160 88579342 -31165556 + MER53 DNA DNA 1 189 0 2512 150 36 0 chr13 88579792 88580205 -31164693 - MSTA LTR MaLR 0 428 1 329 196 0 0 chr13 88580611 88580667 -31164231 - L2 LINE L2 0 3313 3258 331 122 0 0 chr13 88581134 88581183 -31163715 - MLT2B3 LTR ERVL 0 554 506 193 179 18 18 chr13 88581334 88581390 -31163508 + CT-rich Low_complexity Low_complexity 2 57 0 1637 212 85 9 chr13 88581496 88581921 -31162977 + MSTB2 LTR MaLR 1 457 0 1856 150 52 98 chr13 88581991 88582027 -31162871 - MSTB LTR MaLR -4 422 386 2254 75 0 14 chr13 88582027 88582319 -31162579 + AluY SINE Alu 21 308 -3 1856 150 52 98 chr13 88582319 88582722 -31162176 - MSTB LTR MaLR -40 386 3 1458 220 86 12 chr13 88583526 88583853 -31161045 + MLT1A1 LTR MaLR 15 365 0 21 0 0 0 chr13 88584287 88584308 -31160590 + AT_rich Low_complexity Low_complexity 1 21 0 27 96 0 0 chr13 88584401 88584484 -31160414 + AT_rich Low_complexity Low_complexity 1 83 0 1661 175 0 16 chr13 88584544 88584852 -31160046 + AluSx SINE Alu 1 303 -9 183 303 38 53 chr13 88585555 88585687 -31159211 - MIR SINE MIR -110 152 23 295 260 40 20 chr13 88588756 88588856 -31156042 - L2 LINE L2 -19 3294 3193 2053 93 10 3 chr13 88588914 88589203 -31155695 + AluSx SINE Alu 1 291 -21 198 370 31 39 chr13 88590681 88590808 -31154090 + MIR SINE MIR 131 256 -6 1664 136 24 35 chr13 88590818 88591152 -31153746 - AluSx SINE Alu 0 331 1 1109 211 68 68 chr13 88591973 88592338 -31152560 - MLT1A1 LTR MaLR 0 365 1 187 357 41 41 chr13 88592338 88592396 -31152502 - MIR SINE MIR -51 211 154 2356 59 23 0 chr13 88592396 88592700 -31152198 + AluY SINE Alu 1 311 0 187 357 41 41 chr13 88592700 88592837 -31152061 - MIR SINE MIR -107 155 16 24 0 0 0 chr13 88592893 88592917 -31151981 + AT_rich Low_complexity Low_complexity 1 24 0 354 277 63 69 chr13 88593825 88593984 -31150914 + L2 LINE L2 3156 3313 0 25 51 0 0 chr13 88595128 88595167 -31149731 + AT_rich Low_complexity Low_complexity 1 39 0 25 51 0 0 chr13 88595311 88595350 -31149548 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr13 88595919 88595951 -31148947 + AT_rich Low_complexity Low_complexity 1 32 0 2146 122 0 0 chr13 88596516 88596810 -31148088 - AluSx SINE Alu -18 294 1 208 0 0 0 chr13 88596816 88596839 -31148059 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1568 134 111 0 chr13 88596839 88597092 -31147806 - AluSx SINE Alu -29 283 3 1610 196 135 13 chr13 88597118 88597495 -31147403 - MSTA LTR MaLR -5 423 1 1823 115 21 3 chr13 88597496 88597784 -31147114 - MSTA-int LTR MaLR -1 1650 1358 6574 208 41 9 chr13 88598249 88599568 -31145330 - MSTA-int LTR MaLR -290 1361 1 1719 177 138 5 chr13 88599568 88599946 -31144952 - MSTA LTR MaLR 0 428 1 243 0 0 0 chr13 88600113 88600140 -31144758 + (TA)n Simple_repeat Simple_repeat 2 28 0 1810 128 24 14 chr13 88600216 88600506 -31144392 + AluSx SINE Alu 5 297 -15 537 295 99 47 chr13 88600542 88601199 -31143699 + L1MC4 LINE L1 6932 7630 -412 2019 87 56 0 chr13 88601199 88601486 -31143412 + AluSx SINE Alu 1 302 0 537 295 99 47 chr13 88601486 88601526 -31143372 + L1MC4 LINE L1 7630 7666 -376 253 165 13 13 chr13 88601798 88601877 -31143021 + (TA)n Simple_repeat Simple_repeat 1 79 0 1907 109 28 11 chr13 88602359 88602642 -31142256 - AluSc SINE Alu -12 297 10 1032 156 0 0 chr13 88605140 88605320 -31139578 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chr13 88605478 88605510 -31139388 + AT_rich Low_complexity Low_complexity 1 32 0 425 376 54 24 chr13 88605801 88606210 -31138688 + L2 LINE L2 2032 2452 -862 231 351 40 40 chr13 88606343 88606494 -31138404 + MER20B DNA MER1_type 29 179 -604 * 792 266 180 11 chr13 88606492 88606864 -31138034 - LTR50 LTR ERVL -35 760 326 265 298 149 0 chr13 88607569 88607663 -31137235 + L2 LINE L2 3201 3308 -5 537 182 0 0 chr13 88608042 88608141 -31136757 - AluJ/FLAM SINE Alu -213 99 1 2251 220 46 9 chr13 88608707 88609267 -31135631 + L1MB7 LINE L1 5586 6166 -18 2469 57 0 3 chr13 88609533 88609834 -31135064 + AluY SINE Alu 1 300 -11 2413 247 60 3 chr13 88610278 88610878 -31134020 - MER82 DNA MER2_type -6 647 14 1316 265 54 22 chr13 88610900 88611346 -31133552 + LTR40b LTR ERVL 3 462 0 516 221 23 48 chr13 88611663 88611839 -31133059 - MER63A DNA MER1_type -6 204 28 2049 102 28 0 chr13 88612260 88612543 -31132355 - AluSq SINE Alu -22 291 1 294 29 0 0 chr13 88614105 88614140 -31130758 + (CA)n Simple_repeat Simple_repeat 1 35 0 1601 159 48 0 chr13 88614330 88614625 -31130273 - AluJb SINE Alu -1 311 3 3999 97 0 2 chr13 88615183 88615738 -31129160 + MER41A LTR ERV1 1 554 0 21 36 0 0 chr13 88616115 88616143 -31128755 + AT_rich Low_complexity Low_complexity 1 28 0 3980 125 34 38 chr13 88617644 88618374 -31126524 + LTR8A LTR ERV1 1 727 0 4358 146 13 4 chr13 88619221 88619925 -31124973 - MER50 LTR ERV1 -23 711 2 21 71 0 0 chr13 88619969 88620011 -31124887 + AT_rich Low_complexity Low_complexity 1 42 0 400 308 92 32 chr13 88620355 88620652 -31124246 + ERVL LTR ERVL 3240 3529 -1956 2221 144 103 5 chr13 88620857 88621247 -31123651 - MSTA LTR MaLR 0 428 1 251 406 5 27 chr13 88621260 88621484 -31123414 + ERVL LTR ERVL 4323 4541 -1223 831 332 46 22 chr13 88621604 88622014 -31122884 + ERVL LTR ERVL 4578 4997 -767 1072 302 73 27 chr13 88622326 88623283 -31121615 + L1M4 LINE L1 2452 3452 -2694 424 181 12 0 chr13 88623497 88623580 -31121318 + L1MC4a LINE L1 6904 6987 -821 2136 100 0 4 chr13 88623602 88623906 -31120992 + AluSg SINE Alu 1 303 0 7100 196 69 18 chr13 88623968 88625570 -31119328 + MER52A LTR ERV1 1 1755 0 519 256 0 51 chr13 88625578 88625773 -31119125 - L1MCa LINE L1 -5264 1300 1116 263 224 0 0 chr13 88625824 88625882 -31119016 - L1MCa LINE L1 -5454 1110 1053 * 349 188 0 0 chr13 88625866 88625930 -31118968 - L1MCa LINE L1 -5413 632 569 1180 249 82 46 chr13 88626054 88626555 -31118343 - L1MCa LINE L1 -5500 545 27 1939 133 10 0 chr13 88628052 88628346 -31116552 + AluSp SINE Alu 1 297 -16 2185 115 0 0 chr13 88631308 88631603 -31113295 + AluSg SINE Alu 1 295 -15 2316 182 24 2 chr13 88631923 88632374 -31112524 + LOR1b LTR ERV1 1 461 0 26 0 0 0 chr13 88633512 88633538 -31111360 + AT_rich Low_complexity Low_complexity 1 26 0 2059 109 3 23 chr13 88633998 88634302 -31110596 - AluSx SINE Alu -14 298 1 217 310 0 0 chr13 88634689 88634747 -31110151 + (TATG)n Simple_repeat Simple_repeat 2 59 0 762 200 19 0 chr13 88634856 88635011 -31109887 + AluJb SINE Alu 147 304 -8 1120 214 31 13 chr13 88635056 88635285 -31109613 - MER8 DNA MER2_type 0 239 7 491 243 44 39 chr13 88635852 88636033 -31108865 + MIR SINE MIR 81 262 0 30 59 0 0 chr13 88638980 88639031 -31105867 + AT_rich Low_complexity Low_complexity 1 51 0 21 82 0 0 chr13 88639863 88639912 -31104986 + AT_rich Low_complexity Low_complexity 1 49 0 22 70 0 0 chr13 88640455 88640498 -31104400 + AT_rich Low_complexity Low_complexity 1 43 0 260 299 72 0 chr13 88640587 88640684 -31104214 - MER103 DNA DNA -38 128 25 1910 144 44 39 chr13 88641102 88641462 -31103436 - THE1B LTR MaLR -2 362 1 203 427 42 0 chr13 88642830 88642973 -31101925 + L2 LINE L2 3122 3270 -2 830 258 151 81 chr13 88643297 88643858 -31101040 + MLT1E1 LTR MaLR 52 638 -16 316 260 114 0 chr13 88643875 88643998 -31100900 + MER53 DNA DNA 43 179 -10 1101 82 0 0 chr13 88644802 88644949 -31099949 - L1P LINE L1 -1883 4263 4117 711 36 0 0 chr13 88644945 88645028 -31099870 + L1P LINE L1 2215 2297 -3849 * 216 0 0 0 chr13 88646653 88646677 -31098221 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 247 248 119 20 chr13 88647471 88647572 -31097326 + MER103 DNA DNA 7 117 -49 234 269 14 106 chr13 88648512 88648653 -31096245 - MIR SINE MIR -40 222 95 27 0 0 0 chr13 88650167 88650194 -31094704 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr13 88650518 88650554 -31094344 + AT_rich Low_complexity Low_complexity 1 36 0 369 256 186 8 chr13 88650567 88650696 -31094202 - MIR SINE MIR -21 241 90 183 42 0 0 chr13 88650847 88650871 -31094027 + (CA)n Simple_repeat Simple_repeat 2 25 0 449 185 109 0 chr13 88652513 88652605 -31092293 + Tigger3(Golem) DNA MER2_type 1 102 -2927 788 141 38 233 chr13 88652608 88652870 -31092028 + Tigger3(Golem) DNA MER2_type 2818 3028 -1 1023 250 47 50 chr13 88652875 88653239 -31091659 - MLT1A1 LTR MaLR -2 363 1 22 70 0 0 chr13 88654234 88654277 -31090621 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr13 88654651 88654687 -31090211 + AT_rich Low_complexity Low_complexity 1 36 0 246 287 0 111 chr13 88655023 88655131 -31089767 - L2 LINE L2 -223 3049 2954 251 302 43 52 chr13 88655206 88655322 -31089576 - MIR SINE MIR -117 145 31 25 0 0 0 chr13 88655412 88655437 -31089461 + AT_rich Low_complexity Low_complexity 1 25 0 1069 238 29 25 chr13 88656647 88656924 -31087974 + MLT1E1 LTR MaLR 1 278 -376 268 304 205 0 chr13 88657650 88657762 -31087136 - MIR SINE MIR -92 170 36 2161 182 10 0 chr13 88658956 88659351 -31085547 + MER57A LTR ERV1 1 399 -4 1621 184 0 0 chr13 88660380 88660647 -31084251 + MLT1A1 LTR MaLR 96 362 -3 1115 282 46 29 chr13 88660647 88661060 -31083838 + MER76 LTR ERV 269 688 0 589 81 0 0 chr13 88662354 88662440 -31082458 - Alu SINE Alu 0 312 227 1741 147 177 11 chr13 88662996 88663363 -31081535 - MSTA LTR MaLR 0 428 1 8473 142 29 60 chr13 88663363 88664992 -31079906 - MSTA-int LTR MaLR 0 1580 3 1690 167 164 16 chr13 88664994 88665366 -31079532 - MSTA LTR MaLR 0 428 2 778 232 125 31 chr13 88666300 88666524 -31078374 - MIR SINE MIR -16 246 2 251 250 18 0 chr13 88667413 88667469 -31077429 - LTR16A LTR ERVL -14 436 380 2106 125 7 0 chr13 88667530 88667834 -31077064 + AluSx SINE Alu 1 306 -6 608 96 0 11 chr13 88667837 88667931 -31076967 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 406 335 26 0 chr13 88667956 88668111 -31076787 - LTR16A LTR ERVL -179 271 113 320 211 49 8 chr13 88668470 88668593 -31076305 + (TTATA)n Simple_repeat Simple_repeat 2 129 0 181 106 21 21 chr13 88668602 88668649 -31076249 + (TA)n Simple_repeat Simple_repeat 2 48 0 1574 175 13 36 chr13 88668649 88669116 -31075782 - L1M2 LINE L1 -734 5566 5119 2448 69 0 0 chr13 88669116 88669419 -31075479 - AluY SINE Alu -8 303 1 1574 175 13 36 chr13 88669419 88669556 -31075342 - L1M2 LINE L1 -1181 5119 4980 465 66 0 0 chr13 88669603 88669664 -31075234 + (CA)n Simple_repeat Simple_repeat 2 62 0 29 0 0 0 chr13 88669975 88670004 -31074894 + AT_rich Low_complexity Low_complexity 1 29 0 397 269 62 15 chr13 88672046 88672176 -31072722 - MIR SINE MIR 0 262 127 23 54 0 0 chr13 88672256 88672293 -31072605 + AT_rich Low_complexity Low_complexity 1 37 0 385 230 145 55 chr13 88672785 88672985 -31071913 + L2 LINE L2 3075 3292 -21 1134 231 88 31 chr13 88675515 88675866 -31069032 - MLT1A2 LTR MaLR 0 374 4 342 246 32 56 chr13 88676038 88676164 -31068734 - L1MCa LINE L1 -5990 436 314 29 47 0 0 chr13 88676775 88676818 -31068080 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 88677426 88677448 -31067450 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 88677948 88677970 -31066928 + AT_rich Low_complexity Low_complexity 1 22 0 3312 163 35 25 chr13 88678718 88679314 -31065584 - MER52A LTR ERV1 0 1755 1154 1290 207 19 101 chr13 88679316 88679732 -31065166 - MER52A LTR ERV1 -1140 615 234 279 243 14 0 chr13 88680287 88680357 -31064541 - MER52A LTR ERV1 -1684 71 1 22 0 0 0 chr13 88680853 88680875 -31064023 + AT_rich Low_complexity Low_complexity 1 22 0 2200 199 46 5 chr13 88681184 88681622 -31063276 + LOR1b LTR ERV1 3 458 -3 569 120 40 96 chr13 88681855 88681980 -31062918 - L1MA8 LINE L1 -5 6286 6169 1398 165 11 19 chr13 88682421 88682688 -31062210 - L1MA8 LINE L1 -172 6119 5855 1845 171 3 7 chr13 88682856 88683165 -31061733 + AluJb SINE Alu 1 308 -4 288 347 129 5 chr13 88684157 88684350 -31060548 + MIR SINE MIR 32 248 -14 672 191 49 59 chr13 88684918 88685122 -31059776 + MER3 DNA MER1_type 1 202 -7 2760 182 41 40 chr13 88685418 88686051 -31058847 - LTR27 LTR ERV1 0 636 3 327 85 0 0 chr13 88686068 88686115 -31058783 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 54 0 0 chr13 88687115 88687152 -31057746 + AT_rich Low_complexity Low_complexity 1 37 0 2215 124 44 11 chr13 88687988 88688351 -31056547 + THE1C LTR MaLR 1 375 0 5656 165 33 23 chr13 88689078 88690550 -31054348 + L1MA4A LINE L1 4807 6292 -11 1692 292 102 7 chr13 88691259 88691797 -31053101 + MLT2F LTR ERVL 1 589 -74 1604 216 107 64 chr13 88691808 88692323 -31052575 + MLT1F LTR MaLR 1 537 -5 286 285 85 48 chr13 88692676 88692841 -31052057 + L2 LINE L2 2182 2352 -962 830 311 32 26 chr13 88693427 88693771 -31051127 + L2 LINE L2 2350 2695 -619 1860 113 19 0 chr13 88693787 88694052 -31050846 + AluSq SINE Alu 38 307 -6 573 244 37 91 chr13 88694106 88694348 -31050550 + L2 LINE L2 3085 3313 0 558 308 83 9 chr13 88694346 88694612 -31050286 + L2 LINE L2 2719 3000 -313 * 29 47 0 0 chr13 88695430 88695473 -31049425 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr13 88696560 88696599 -31048299 + AT_rich Low_complexity Low_complexity 1 39 0 444 274 7 37 chr13 88697471 88697606 -31047292 - MLT2E LTR ERVL -466 162 32 192 297 156 0 chr13 88697668 88697732 -31047166 - L2 LINE L2 -1 3271 3198 345 278 262 16 chr13 88697957 88698148 -31046750 - MIR SINE MIR -23 239 2 31 0 0 0 chr13 88698265 88698296 -31046602 + AT_rich Low_complexity Low_complexity 1 31 0 644 127 9 0 chr13 88698395 88698505 -31046393 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 210 284 30 0 chr13 88698527 88698594 -31046304 - L2 LINE L2 -1 3312 3244 23 33 0 0 chr13 88699197 88699227 -31045671 + AT_rich Low_complexity Low_complexity 1 30 0 642 302 156 16 chr13 88699340 88699791 -31045107 - LTR33A LTR ERVL 0 523 42 422 350 104 34 chr13 88700118 88700587 -31044311 + L2 LINE L2 2812 3313 0 779 253 13 105 chr13 88701091 88701482 -31043416 - MER57A LTR ERV1 0 403 49 2285 96 0 0 chr13 88701670 88701963 -31042935 + AluY SINE Alu 1 293 -18 242 329 14 0 chr13 88703225 88703295 -31041603 - Zaphod DNA AcHobo -3953 78 8 701 276 16 56 chr13 88704037 88704287 -31040611 - MIR SINE MIR -18 244 5 22 0 0 0 chr13 88706218 88706240 -31038658 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 88706391 88706420 -31038478 + AT_rich Low_complexity Low_complexity 1 29 0 1517 159 41 44 chr13 88706921 88707236 -31037662 + MER50 LTR ERV1 1 314 -420 181 268 0 0 chr13 88708307 88708348 -31036550 + L2 LINE L2 2931 2971 -301 209 211 18 0 chr13 88708527 88708584 -31036314 + (TA)n Simple_repeat Simple_repeat 1 58 0 1210 312 111 67 chr13 88709132 88710452 -31034446 - L2 LINE L2 -113 3200 1791 228 299 128 54 chr13 88710658 88710732 -31034166 - MLT1J2 LTR MaLR -201 249 182 1739 150 0 54 chr13 88710732 88711046 -31033852 - AluJo SINE Alu -15 297 1 228 299 128 54 chr13 88711046 88711175 -31033723 - MLT1J2 LTR MaLR -268 182 31 2061 209 59 6 chr13 88711276 88711769 -31033129 - L1MC3 LINE L1 -20 7765 7247 261 244 100 0 chr13 88711990 88712080 -31032818 - L2 LINE L2 -1895 1419 1321 1186 191 43 4 chr13 88712113 88712452 -31032446 + MER47A DNA MER2_type 6 363 -3 1631 179 10 27 chr13 88712771 88713068 -31031830 + AluJo SINE Alu 1 292 -20 21 36 0 0 chr13 88713757 88713785 -31031113 + AT_rich Low_complexity Low_complexity 1 28 0 3693 186 47 19 chr13 88713901 88714681 -31030217 + L1MA7 LINE L1 5407 6208 -83 1629 196 71 35 chr13 88714898 88715362 -31029536 + L1MA7 LINE L1 5809 6289 -2 1125 183 56 0 chr13 88716184 88716394 -31028504 + LTR26 LTR ERV1 1 222 -381 373 151 96 0 chr13 88716394 88716467 -31028431 + MADE1 DNA Mariner 1 80 0 * 1538 170 69 118 chr13 88716467 88716865 -31028033 + LTR26 LTR ERV1 226 603 0 21 0 0 0 chr13 88717743 88717764 -31027134 + AT_rich Low_complexity Low_complexity 1 21 0 3205 140 21 111 chr13 88717806 88718565 -31026333 - LTR8 LTR ERV1 0 691 1 2259 78 0 3 chr13 88718765 88719061 -31025837 - AluY SINE Alu -16 295 1 893 157 0 26 chr13 88720342 88720528 -31024370 - AluSg/x SINE Alu 0 315 134 1138 130 0 12 chr13 88721155 88721317 -31023581 + AluSq SINE Alu 133 292 -21 23 33 0 0 chr13 88721337 88721367 -31023531 + AT_rich Low_complexity Low_complexity 1 30 0 517 275 187 33 chr13 88723026 88723299 -31021599 - L2 LINE L2 0 3313 2999 230 0 33 0 chr13 88723826 88723856 -31021042 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2085 100 7 3 chr13 88724179 88724478 -31020420 + AluY SINE Alu 1 300 -11 1534 212 0 0 chr13 88724969 88725243 -31019655 + AluJb SINE Alu 22 295 -17 704 104 0 0 chr13 88725260 88725356 -31019542 + L1P3 LINE L1 1 96 -6365 337 64 0 21 chr13 88725354 88725401 -31019497 + L1P3 LINE L1 1137 1182 -5279 * 237 299 147 29 chr13 88725802 88726006 -31018892 - LTR16C LTR ERVL -3 488 261 1936 152 7 0 chr13 88727343 88727653 -31017245 - AluSx SINE Alu 0 312 1 1250 188 169 78 chr13 88727819 88728282 -31016616 + MLT1D LTR MaLR 1 505 0 372 369 33 29 chr13 88728686 88728991 -31015907 - L3 LINE CR1 -210 1367 980 22 94 0 0 chr13 88729299 88729363 -31015535 + AT_rich Low_complexity Low_complexity 1 64 0 27 81 0 0 chr13 88730495 88730557 -31014341 + AT_rich Low_complexity Low_complexity 1 62 0 608 333 13 17 chr13 88730559 88730790 -31014108 + MIR SINE MIR 7 236 -26 4152 8 8 2 chr13 88733570 88734049 -31010849 + L1PA3 LINE L1 5674 6155 0 283 209 38 9 chr13 88734451 88734556 -31010342 + (TA)n Simple_repeat Simple_repeat 1 108 0 35 0 0 0 chr13 88734784 88734819 -31010079 + AT_rich Low_complexity Low_complexity 1 35 0 908 146 6 67 chr13 88736866 88737001 -31007897 + MLT2B3 LTR ERVL 2 125 -429 2580 110 8 8 chr13 88737001 88737374 -31007524 + THE1C LTR MaLR 3 375 0 908 146 6 67 chr13 88737374 88737416 -31007482 + MLT2B3 LTR ERVL 125 168 -386 6715 65 14 0 chr13 88737450 88738474 -31006424 - L1PA7 LINE L1 -1 6153 5122 2456 208 39 39 chr13 88738476 88739111 -31005787 + MLT1A1-int LTR MaLR 1060 1735 0 1472 243 22 3 chr13 88739111 88739469 -31005429 + MLT1A1 LTR MaLR 1 365 0 3463 149 136 125 chr13 88740262 88741348 -31003550 - pTR5 LTR ERV1 -9 2429 366 2010 98 42 39 chr13 88741368 88741674 -31003224 - AluY SINE Alu -4 307 1 1715 156 20 43 chr13 88741811 88742158 -31002740 - MER44D DNA MER2_type 0 609 1 189 0 0 0 chr13 88742685 88742706 -31002192 + (T)n Simple_repeat Simple_repeat 1 21 0 387 239 108 23 chr13 88743356 88743486 -31001412 + MLT1J1 LTR MaLR 1 141 -305 398 295 73 67 chr13 88744861 88745043 -30999855 - HAL1 LINE L1 -1561 946 760 1421 236 30 33 chr13 88745043 88745408 -30999490 + MLT1A1 LTR MaLR 2 365 0 398 295 73 67 chr13 88745408 88745581 -30999317 - HAL1 LINE L1 -1747 760 589 186 43 0 0 chr13 88746054 88746077 -30998821 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 751 213 109 6 chr13 88746744 88746918 -30997980 + MER58A DNA MER1_type 1 192 -32 404 338 79 43 chr13 88747058 88747475 -30997423 + LTR16B LTR ERVL 1 432 -32 916 195 152 103 chr13 88747663 88748011 -30996887 + MSTD LTR MaLR 1 396 0 27 49 0 0 chr13 88748290 88748331 -30996567 + AT_rich Low_complexity Low_complexity 1 41 0 246 269 81 47 chr13 88748724 88748873 -30996025 - MER67D LTR ERV1 -2 512 359 347 274 9 9 chr13 88748930 88749036 -30995862 - MER67C LTR ERV1 -318 392 287 233 256 49 12 chr13 88749094 88749176 -30995722 - MIR SINE MIR -73 189 105 880 115 0 0 chr13 88749207 88749337 -30995561 + AluSg/x SINE Alu 176 305 -7 675 241 19 38 chr13 88749366 88749578 -30995320 - MER3 DNA MER1_type -1 208 1 2087 102 0 0 chr13 88749728 88750012 -30994886 - AluSx SINE Alu -28 284 1 1057 210 25 103 chr13 88751092 88751403 -30993495 - MLT1A1 LTR MaLR 0 365 90 2001 144 0 3 chr13 88751403 88751701 -30993197 - AluSx SINE Alu -14 298 2 1057 210 25 103 chr13 88751701 88751785 -30993113 - MLT1A1 LTR MaLR -275 90 1 208 371 0 0 chr13 88752558 88752620 -30992278 - MIR3 SINE MIR -26 182 121 1272 194 15 23 chr13 88752624 88752887 -30992011 + AluJo SINE Alu 7 267 -45 25 51 0 0 chr13 88752953 88752992 -30991906 + AT_rich Low_complexity Low_complexity 1 39 0 1618 161 3 68 chr13 88754184 88754495 -30990403 - AluJo SINE Alu -21 291 1 314 292 35 14 chr13 88755066 88755210 -30989688 - L1MC5 LINE L1 -53 7908 7762 298 260 81 24 chr13 88755443 88755566 -30989332 + MIR SINE MIR 74 203 -59 22 0 0 0 chr13 88757885 88757907 -30986991 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr13 88759294 88759327 -30985571 + (CA)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr13 88759990 88760013 -30984885 + AT_rich Low_complexity Low_complexity 1 23 0 233 268 18 0 chr13 88760084 88760140 -30984758 + L2 LINE L2 3255 3311 -2 239 312 101 40 chr13 88761659 88761858 -30983040 + MIR SINE MIR 49 259 -3 2170 105 0 13 chr13 88761911 88762215 -30982683 - AluSc SINE Alu -9 300 1 21 36 0 0 chr13 88763814 88763842 -30981056 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 88764776 88764797 -30980101 + AT_rich Low_complexity Low_complexity 1 21 0 21 37 0 56 chr13 88765161 88765215 -30979683 + AT_rich Low_complexity Low_complexity 1 51 0 1636 210 219 22 chr13 88765350 88765903 -30978995 + L1PA12 LINE L1 1 662 -6919 26 0 0 0 chr13 88768123 88768149 -30976749 + AT_rich Low_complexity Low_complexity 1 26 0 33 56 0 0 chr13 88768250 88768304 -30976594 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr13 88768581 88768603 -30976295 + AT_rich Low_complexity Low_complexity 1 22 0 2144 118 0 0 chr13 88768890 88769196 -30975702 - AluY SINE Alu -5 306 1 25 0 0 0 chr13 88769400 88769425 -30975473 + AT_rich Low_complexity Low_complexity 1 25 0 2194 105 3 0 chr13 88771613 88771908 -30972990 + AluSp SINE Alu 1 296 -17 212 371 0 11 chr13 88772549 88772638 -30972260 + L2 LINE L2 3184 3271 -1 408 235 93 62 chr13 88772703 88772904 -30971994 + MLT1F1 LTR MaLR 1 266 -301 493 311 8 5 chr13 88772915 88773105 -30971793 + MLT1F1 LTR MaLR 402 563 -4 1326 289 90 19 chr13 88773448 88774113 -30970785 + HsTC2a DNA Tc2 1 712 -32 22 0 0 0 chr13 88774325 88774347 -30970551 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr13 88775425 88775466 -30969432 + AT_rich Low_complexity Low_complexity 1 41 0 323 376 32 25 chr13 88775467 88775746 -30969152 - HAL1 LINE L1 -2 2505 2225 392 332 112 36 chr13 88776311 88776730 -30968168 - HAL1 LINE L1 -582 1925 1475 246 284 78 43 chr13 88776791 88777023 -30967875 - L1MEd LINE L1 -4876 1243 1004 699 162 13 32 chr13 88777612 88777766 -30967132 - L1MA10 LINE L1 -3 6331 6181 551 220 16 40 chr13 88777766 88778027 -30966871 - L1ME2 LINE L1 -131 6033 5204 21 0 0 0 chr13 88778814 88778835 -30966063 + AT_rich Low_complexity Low_complexity 1 21 0 194 349 79 40 chr13 88778904 88779030 -30965868 - L2 LINE L2 -8 3305 3175 432 0 0 0 chr13 88779353 88779401 -30965497 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 1437 183 86 0 chr13 88779404 88779672 -30965226 + AluJb SINE Alu 1 291 -21 260 181 12 0 chr13 88779684 88779767 -30965131 + (TA)n Simple_repeat Simple_repeat 1 84 0 212 167 24 0 chr13 88779767 88779809 -30965089 + (TG)n Simple_repeat Simple_repeat 1 43 0 392 304 130 38 chr13 88779830 88780123 -30964775 - L2 LINE L2 -654 2660 2341 26 30 0 0 chr13 88780773 88780806 -30964092 + AT_rich Low_complexity Low_complexity 1 33 0 2333 246 59 11 chr13 88781049 88781662 -30963236 - MER82 DNA MER2_type -5 648 7 222 91 0 0 chr13 88781662 88781695 -30963203 + (CA)n Simple_repeat Simple_repeat 2 34 0 584 268 13 13 chr13 88781734 88781891 -30963007 + MLT1D LTR MaLR 12 168 -337 180 77 0 0 chr13 88783063 88783089 -30961809 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 22 88 0 0 chr13 88783659 88783716 -30961182 + AT_rich Low_complexity Low_complexity 1 57 0 2166 118 0 3 chr13 88783806 88784110 -30960788 - AluSc SINE Alu -6 303 1 23 33 0 0 chr13 88784340 88784370 -30960528 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 88784814 88784842 -30960056 + AT_rich Low_complexity Low_complexity 1 28 0 794 216 100 44 chr13 88784924 88785283 -30959615 - MSTC LTR MaLR 0 428 1 2117 121 0 7 chr13 88785813 88786111 -30958787 - AluSq SINE Alu -13 300 5 12400 25 2 1 chr13 88786424 88787934 -30956964 - L1P LINE L1 -2416 3730 2219 10615 31 2 1 chr13 88787934 88789969 -30954929 + L1PA3 LINE L1 4117 6152 -3 327 85 0 0 chr13 88790009 88790056 -30954842 + (GA)n Simple_repeat Simple_repeat 2 48 0 182 324 72 29 chr13 88790153 88790292 -30954606 - L2 LINE L2 -2942 372 228 209 125 0 25 chr13 88791680 88791720 -30953178 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 367 197 0 0 chr13 88793039 88793105 -30951793 + L2 LINE L2 2299 2364 -950 697 278 88 39 chr13 88793106 88793623 -30951275 + MLT1G3 LTR MaLR 1 589 -6 438 283 46 122 chr13 88793632 88793802 -30951096 + L2 LINE L2 2368 2503 -811 1808 92 16 8 chr13 88793802 88794051 -30950847 + AluSc SINE Alu 39 289 -20 438 283 46 122 chr13 88794051 88794209 -30950689 + L2 LINE L2 2503 2671 -643 653 296 92 43 chr13 88794224 88794595 -30950303 - LTR16A1 LTR ERVL -19 438 50 23 86 0 0 chr13 88794725 88794783 -30950115 + AT_rich Low_complexity Low_complexity 1 58 0 188 330 0 53 chr13 88794849 88794943 -30949955 + L2 LINE L2 3180 3268 -4 544 268 89 6 chr13 88795187 88795355 -30949543 - MER58A DNA MER1_type 0 224 43 192 401 57 13 chr13 88795745 88795902 -30948996 + MIR SINE MIR 20 183 -79 2179 104 0 3 chr13 88796607 88796906 -30947992 + AluY SINE Alu 1 298 -13 2469 30 0 33 chr13 88797627 88797928 -30946970 + AluY SINE Alu 1 291 -20 1612 206 67 59 chr13 88798343 88798849 -30946049 + MER67D LTR ERV1 1 510 -4 1609 107 0 19 chr13 88799019 88799281 -30945617 - L1MA4 LINE L1 -6 6294 6038 3518 174 19 6 chr13 88799288 88799967 -30944931 - L1MA4 LINE L1 -5 6295 5608 1863 146 0 33 chr13 88800431 88800732 -30944166 - AluJo SINE Alu -18 294 4 21 57 0 0 chr13 88801189 88801224 -30943674 + AT_rich Low_complexity Low_complexity 1 35 0 36 0 0 0 chr13 88801536 88801572 -30943326 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 88801590 88801611 -30943287 + AT_rich Low_complexity Low_complexity 1 21 0 561 170 28 19 chr13 88801719 88801825 -30943073 - U6 snRNA snRNA 0 107 1 23 0 0 0 chr13 88802250 88802273 -30942625 + AT_rich Low_complexity Low_complexity 1 23 0 345 261 188 7 chr13 88802407 88802545 -30942353 - MER5A DNA MER1_type 0 189 27 679 270 73 39 chr13 88802724 88802862 -30942036 + LTR37A LTR ERV1 59 191 -235 3578 139 13 90 chr13 88802862 88803047 -30941851 - LTR8 LTR ERV1 0 691 493 2800 3 0 3 chr13 88803047 88803357 -30941541 + AluYa5 SINE Alu 1 309 -2 3578 139 13 90 chr13 88803357 88803919 -30940979 - LTR8 LTR ERV1 -198 493 1 679 270 73 39 chr13 88803919 88804135 -30940763 + LTR37A LTR ERV1 191 425 -1 22 0 0 0 chr13 88804550 88804572 -30940326 + AT_rich Low_complexity Low_complexity 1 22 0 1615 126 114 15 chr13 88804582 88804844 -30940054 + AluSg SINE Alu 1 288 -22 386 243 52 52 chr13 88805589 88805725 -30939173 + MER58 DNA MER1_type 1 136 -205 2019 110 0 0 chr13 88805752 88806033 -30938865 - AluSx SINE Alu -2 310 30 625 173 36 62 chr13 88806046 88806271 -30938627 - LTR21B LTR ERV1 0 438 220 831 233 0 5 chr13 88806827 88807033 -30937865 + AluSq SINE Alu 1 205 -108 1650 178 11 4 chr13 88807047 88807328 -30937570 - AluSx SINE Alu -27 285 3 21 36 0 0 chr13 88809659 88809687 -30935211 + AT_rich Low_complexity Low_complexity 1 28 0 253 231 0 0 chr13 88810743 88810795 -30934103 + LTR30 LTR ERV1 1 52 -670 1635 159 48 8 chr13 88810797 88811203 -30933695 + LTR12 LTR ERV1 57 2036 -402 271 265 10 10 chr13 88811203 88811301 -30933597 + LTR30 LTR ERV1 556 653 -69 1289 136 39 0 chr13 88811301 88811507 -30933391 + LTR12 LTR ERV1 490 703 -11 229 370 32 37 chr13 88812007 88812223 -30932675 - LTR16B LTR ERVL -146 318 104 652 341 47 28 chr13 88812363 88812832 -30932066 - ERVL LTR ERVL -381 5383 4906 320 331 35 15 chr13 88813330 88813503 -30931395 - ERVL LTR ERVL -1351 4303 4123 1145 279 37 19 chr13 88813504 88813826 -30931072 + MER45B DNA AcHobo 100 427 -613 349 218 39 0 chr13 88813828 88813906 -30930992 + MLT1C LTR MaLR 11 91 -376 559 181 0 0 chr13 88813911 88814005 -30930893 + MLT1C LTR MaLR 374 467 0 1087 226 56 43 chr13 88814012 88814317 -30930581 + MER45B DNA AcHobo 430 738 -302 1932 119 143 6 chr13 88815492 88815820 -30929078 + MSTA LTR MaLR 55 427 -1 228 311 56 11 chr13 88816299 88816389 -30928509 + Charlie8 DNA MER1_type 155 248 -2169 2090 98 3 3 chr13 88816466 88816772 -30928126 - AluSp SINE Alu 0 306 1 21 36 0 0 chr13 88817177 88817205 -30927693 + AT_rich Low_complexity Low_complexity 1 28 0 345 24 0 0 chr13 88817489 88817531 -30927367 + (CA)n Simple_repeat Simple_repeat 2 43 0 259 339 107 16 chr13 88818174 88818295 -30926603 - MIR SINE MIR -89 173 42 25 0 0 0 chr13 88818477 88818502 -30926396 + AT_rich Low_complexity Low_complexity 1 25 0 2157 81 0 11 chr13 88818602 88818913 -30925985 - AluSc SINE Alu 0 308 1 185 328 0 0 chr13 88818990 88819051 -30925847 - L2 LINE L2 0 3272 3212 180 0 0 0 chr13 88819860 88819880 -30925018 + (TA)n Simple_repeat Simple_repeat 1 20 0 1928 143 18 0 chr13 88820642 88820954 -30923944 + AluSx SINE Alu 1 317 0 2112 329 78 66 chr13 88820980 88821058 -30923840 - L2 LINE L2 -476 2838 2762 1181 110 150 0 chr13 88821058 88821258 -30923640 - MER30 DNA MER1_type 0 230 1 2112 329 78 66 chr13 88821258 88822280 -30922618 - L2 LINE L2 -552 2762 1753 1292 230 58 4 chr13 88822280 88822554 -30922344 - AluJo SINE Alu -19 293 5 2112 329 78 66 chr13 88822554 88822600 -30922298 - L2 LINE L2 -1561 1753 1709 1431 139 70 11 chr13 88822600 88822887 -30922011 + L1MA8 LINE L1 5983 6286 -5 2112 329 78 66 chr13 88822887 88823471 -30921427 - L2 LINE L2 -1605 1709 1086 207 307 45 23 chr13 88823726 88823814 -30921084 + MIR SINE MIR 12 101 -161 866 171 6 0 chr13 88823947 88824105 -30920793 + HUERS-P3 LTR ERV1 8753 8911 -8 2771 119 123 6 chr13 88824105 88824600 -30920298 + LTR9B LTR ERV1 8 560 -84 21 0 0 0 chr13 88826086 88826107 -30918791 + AT_rich Low_complexity Low_complexity 1 21 0 182 302 48 0 chr13 88826313 88826376 -30918522 + MIR SINE MIR 168 233 -29 28 61 0 0 chr13 88827116 88827165 -30917733 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 88827434 88827455 -30917443 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 88828084 88828105 -30916793 + AT_rich Low_complexity Low_complexity 1 21 0 2360 194 72 52 chr13 88828159 88828929 -30915969 - LTR1B LTR ERV1 0 826 1 1417 184 3 103 chr13 88829042 88829373 -30915525 + AluJb SINE Alu 2 299 -3 361 347 34 20 chr13 88829435 88829606 -30915292 + MIR SINE MIR 15 190 -62 326 169 0 14 chr13 88829634 88829705 -30915193 + CT-rich Low_complexity Low_complexity 4 73 0 476 354 50 40 chr13 88829751 88830229 -30914669 + MLT1J LTR MaLR 3 485 -26 1393 236 63 47 chr13 88830854 88831115 -30913783 - MLT1D LTR MaLR -6 499 225 5637 66 1 3 chr13 88831115 88831847 -30913051 - L1PA7 LINE L1 -2 6152 5422 1393 236 63 47 chr13 88831847 88832076 -30912822 - MLT1D LTR MaLR -280 225 1 23 33 0 0 chr13 88832437 88832467 -30912431 + AT_rich Low_complexity Low_complexity 1 30 0 437 204 41 0 chr13 88832714 88832886 -30912012 + (TA)n Simple_repeat Simple_repeat 2 180 0 31 0 0 0 chr13 88833819 88833850 -30911048 + AT_rich Low_complexity Low_complexity 1 31 0 673 198 12 35 chr13 88834717 88834771 -30910127 - L1MD1 LINE L1 -1 6241 6187 3179 179 28 35 chr13 88834771 88835486 -30909412 - MER67C LTR ERV1 0 710 1 673 198 12 35 chr13 88835486 88835603 -30909295 - L1MD1 LINE L1 -55 6187 6074 1406 156 123 22 chr13 88836077 88836353 -30908545 - AluSg SINE Alu -6 304 1 21 36 0 0 chr13 88836731 88836759 -30908139 + AT_rich Low_complexity Low_complexity 1 28 0 357 206 52 19 chr13 88836949 88837061 -30907837 + L1MA9 LINE L1 5667 5790 -379 364 91 74 16 chr13 88837063 88837184 -30907714 + (TA)n Simple_repeat Simple_repeat 1 128 0 2232 191 21 53 chr13 88837184 88837714 -30907184 + L1MA9 LINE L1 5785 6297 -15 21 0 0 0 chr13 88838480 88838501 -30906397 + AT_rich Low_complexity Low_complexity 1 21 0 2037 118 7 0 chr13 88838867 88839146 -30905752 - AluSg SINE Alu -29 281 1 22 0 0 0 chr13 88840319 88840341 -30904557 + AT_rich Low_complexity Low_complexity 1 22 0 43 64 0 0 chr13 88840638 88840716 -30904182 + AT_rich Low_complexity Low_complexity 1 78 0 215 182 23 0 chr13 88840797 88840841 -30904057 + (TA)n Simple_repeat Simple_repeat 1 45 0 1861 121 0 68 chr13 88841017 88841340 -30903558 + AluY SINE Alu 1 301 -10 21 36 0 0 chr13 88841761 88841789 -30903109 + AT_rich Low_complexity Low_complexity 1 28 0 283 49 0 24 chr13 88841790 88841831 -30903067 - L1PA7 LINE L1 -8 6146 6107 21 0 0 0 chr13 88842253 88842274 -30902624 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 88843563 88843591 -30901307 + AT_rich Low_complexity Low_complexity 1 28 0 188 328 53 35 chr13 88843691 88843862 -30901036 - MER5C DNA MER1_type -130 194 21 461 274 13 89 chr13 88844677 88844914 -30899984 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chr13 88845184 88845213 -30899685 + AT_rich Low_complexity Low_complexity 1 29 0 248 0 31 0 chr13 88846146 88846178 -30898720 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1783 212 6 9 chr13 88846271 88846633 -30898265 + MLT1A1 LTR MaLR 1 365 0 2905 165 52 7 chr13 88847763 88848302 -30896596 + Tigger3b DNA MER2_type 2 564 -667 5203 163 40 24 chr13 88848303 88849463 -30895435 + L1PA16 LINE L1 4470 5611 -555 2367 118 8 31 chr13 88849463 88849845 -30895053 + THE1C LTR MaLR 1 373 -2 5203 163 40 24 chr13 88849845 88850100 -30894798 + L1PA16 LINE L1 5611 5861 -305 1561 181 81 16 chr13 88850100 88850421 -30894477 + MER61A LTR ERV1 1 342 -1 5203 163 40 24 chr13 88850421 88850680 -30894218 + L1PA16 LINE L1 5861 6165 -1 2838 113 191 14 chr13 88850686 88851250 -30893648 + Tigger3b DNA MER2_type 546 1209 -22 195 167 0 0 chr13 88852462 88852504 -30892394 + GA-rich Low_complexity Low_complexity 1 42 0 238 380 74 18 chr13 88853635 88853798 -30891100 - L2 LINE L2 -245 3068 2897 410 346 77 59 chr13 88853868 88854272 -30890626 - L2 LINE L2 -482 2832 2422 1832 90 80 17 chr13 88855310 88855685 -30889213 - LTR7 LTR ERV1 -2 448 1 318 197 106 110 chr13 88855814 88856068 -30888830 + LTR37B LTR ERV1 139 391 -77 5144 45 0 0 chr13 88856125 88856749 -30888149 - L1PA4 LINE L1 -3 6152 5529 572 121 16 33 chr13 88856978 88857160 -30887738 + (TA)n Simple_repeat Simple_repeat 1 179 0 180 125 0 0 chr13 88857174 88857206 -30887692 + (TA)n Simple_repeat Simple_repeat 2 33 0 1337 277 35 28 chr13 88857791 88858220 -30886678 + LTR16A LTR ERVL 19 450 0 2767 180 110 13 chr13 88858336 88858947 -30885951 - LTR51 LTR ERV1 -1 670 1 1567 230 31 6 chr13 88859973 88860325 -30884573 - MLT1A1 LTR MaLR -4 361 1 328 342 217 20 chr13 88860341 88860747 -30884151 + L2 LINE L2 2812 3297 -16 226 143 0 0 chr13 88860816 88860858 -30884040 - LTR66 LTR ERVL -169 441 400 205 250 109 16 chr13 88860896 88860960 -30883938 - L2 LINE L2 -499 2815 2746 1883 189 44 19 chr13 88860963 88861380 -30883518 - MLT2C2 LTR ERVL -42 478 7 1906 181 51 30 chr13 88861406 88861947 -30882951 - MLT2A2 LTR ERVL 0 554 1 2169 82 3 3 chr13 88863477 88863759 -30881139 + AluSq SINE Alu 1 282 -31 393 81 0 0 chr13 88863761 88863823 -30881075 + (TA)n Simple_repeat Simple_repeat 2 63 0 2164 106 0 16 chr13 88864459 88864762 -30880136 - AluSg SINE Alu -10 300 3 2175 177 37 2 chr13 88865005 88865407 -30879491 + LOR1b LTR ERV1 46 461 0 617 312 73 21 chr13 88866094 88866328 -30878570 - MIR SINE MIR -1 261 16 827 210 0 0 chr13 88866475 88866618 -30878280 - FRAM SINE Alu -33 143 1 2072 102 14 0 chr13 88866649 88866933 -30877965 - AluSq SINE Alu -25 288 1 260 284 158 4 chr13 88867050 88867328 -30877570 - L1ME4a LINE L1 0 6121 5801 2490 44 0 0 chr13 88869532 88869829 -30875069 + AluY SINE Alu 1 297 -14 623 232 29 48 chr13 88871598 88871870 -30873028 - Charlie2b DNA MER1_type -200 2582 2316 500 241 44 70 chr13 88872002 88872333 -30872565 - Charlie2b DNA MER1_type -959 1823 1408 * 1370 176 17 66 chr13 88872326 88872673 -30872225 - LTR1 LTR ERV1 -258 527 198 436 103 77 13 chr13 88872717 88872795 -30872103 + LTR1 LTR ERV1 537 619 -166 191 287 50 79 chr13 88872839 88872940 -30871958 - L2 LINE L2 -2845 469 372 764 147 0 61 chr13 88872946 88873109 -30871789 - LTR1 LTR ERV1 0 785 633 688 169 20 47 chr13 88873109 88873257 -30871641 + AluJb SINE Alu 164 307 -5 307 365 33 17 chr13 88873326 88873507 -30871391 + L2 LINE L2 2459 2642 -672 387 329 84 78 chr13 88873706 88874193 -30870705 + L2 LINE L2 2824 3313 0 240 364 53 0 chr13 88874355 88874487 -30870411 - L2 LINE L2 -1906 1408 1270 24 32 0 0 chr13 88874568 88874599 -30870299 + AT_rich Low_complexity Low_complexity 1 31 0 1619 157 45 11 chr13 88875113 88875399 -30869499 + AluJo SINE Alu 6 301 -11 257 246 36 9 chr13 88875861 88875971 -30868927 + (TA)n Simple_repeat Simple_repeat 1 113 0 199 348 37 30 chr13 88878533 88878668 -30866230 + MIR SINE MIR 15 150 -112 2328 198 52 28 chr13 88880264 88880866 -30864032 - L1MC2 LINE L1 -11 6333 5718 2649 245 60 29 chr13 88881033 88882793 -30862105 - L1MC2 LINE L1 -624 5720 3794 3154 165 19 2 chr13 88884475 88885013 -30859885 + MER44D DNA MER2_type 2 603 -2 1592 273 90 6 chr13 88885098 88885596 -30859302 + MLT1F LTR MaLR 2 541 -1 370 167 0 0 chr13 88886022 88886082 -30858816 + L1PA14 LINE L1 5566 5625 -536 3694 122 11 0 chr13 88886083 88886640 -30858258 + L1PA14 LINE L1 5598 6160 -1 222 350 55 27 chr13 88886788 88886971 -30857927 - MIR SINE MIR 0 262 75 252 372 83 16 chr13 88887133 88887254 -30857644 - L2 LINE L2 -1 3271 3143 2353 118 29 0 chr13 88887331 88887680 -30857218 + THE1B LTR MaLR 6 364 0 2079 105 10 0 chr13 88889633 88889929 -30854969 - AluSp SINE Alu -14 299 1 1512 221 18 18 chr13 88890279 88890614 -30854284 + MSTB LTR MaLR 3 337 -89 770 120 15 15 chr13 88890647 88890780 -30854118 - FLAM_C SINE Alu 0 133 1 28 0 0 0 chr13 88892992 88893020 -30851878 + AT_rich Low_complexity Low_complexity 1 28 0 906 111 0 14 chr13 88893364 88893508 -30851390 - L1PA14 LINE L1 -2 6159 6018 24 0 0 0 chr13 88894058 88894082 -30850816 + AT_rich Low_complexity Low_complexity 1 24 0 822 283 21 8 chr13 88894290 88894530 -30850368 + MLT1C LTR MaLR 225 467 0 282 196 0 0 chr13 88894530 88894581 -30850317 + MLT1C-int LTR MaLR 1 51 -1320 * 969 168 64 142 chr13 88894579 88894683 -30850215 - MLT1C-int LTR MaLR -1039 332 221 309 143 0 0 chr13 88894683 88894732 -30850166 + MADE1 DNA Mariner 31 79 -1 969 168 64 142 chr13 88894732 88894924 -30849974 - MLT1C-int LTR MaLR -1150 221 15 562 231 79 121 chr13 88894927 88895217 -30849681 - MLT1C LTR MaLR -109 358 81 666 219 7 7 chr13 88895469 88895615 -30849283 + FRAM SINE Alu 23 168 -8 1373 109 54 14 chr13 88896657 88896878 -30848020 + MER30 DNA MER1_type 1 230 0 2106 118 3 0 chr13 88897668 88897957 -30846941 + AluSg SINE Alu 1 290 -20 21 36 0 0 chr13 88898182 88898210 -30846688 + AT_rich Low_complexity Low_complexity 1 28 0 250 303 176 7 chr13 88898470 88898650 -30846248 + MIR SINE MIR 38 249 -13 28 29 0 0 chr13 88898903 88898938 -30845960 + AT_rich Low_complexity Low_complexity 1 35 0 2228 206 37 14 chr13 88898969 88900329 -30844569 + L1MC3 LINE L1 4898 6332 -1 23 0 0 0 chr13 88904299 88904322 -30840576 + AT_rich Low_complexity Low_complexity 1 23 0 270 95 0 0 chr13 88904739 88904781 -30840117 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr13 88905087 88905108 -30839790 + AT_rich Low_complexity Low_complexity 1 21 0 237 178 0 0 chr13 88909077 88909122 -30835776 + (TATG)n Simple_repeat Simple_repeat 3 47 0 24 53 0 0 chr13 88909210 88909248 -30835650 + AT_rich Low_complexity Low_complexity 1 38 0 31 68 0 0 chr13 88912031 88912090 -30832808 + AT_rich Low_complexity Low_complexity 1 59 0 227 30 0 30 chr13 88913770 88913803 -30831095 + (TTA)n Simple_repeat Simple_repeat 3 34 0 1418 190 0 22 chr13 88913808 88914076 -30830822 - AluJo SINE Alu -30 282 21 21 0 0 0 chr13 88914076 88914097 -30830801 + AT_rich Low_complexity Low_complexity 1 21 0 988 110 84 13 chr13 88914097 88914251 -30830647 - AluSg/x SINE Alu -24 286 122 35 0 0 0 chr13 88915143 88915178 -30829720 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr13 88916635 88916660 -30828238 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr13 88918067 88918110 -30826788 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 88919169 88919198 -30825700 + AT_rich Low_complexity Low_complexity 1 29 0 204 341 144 0 chr13 88919253 88919385 -30825513 - MIR SINE MIR -56 206 56 469 238 16 8 chr13 88919681 88919858 -30825040 + MER47B DNA MER2_type 2 227 -191 287 197 98 0 chr13 88919858 88919919 -30824979 + MER1A DNA MER1_type 1 67 -460 2122 100 3 7 chr13 88919919 88920209 -30824689 + AluSg SINE Alu 1 289 -21 3111 137 13 6 chr13 88920241 88920716 -30824182 + MER1A DNA MER1_type 52 529 0 1081 166 47 0 chr13 88920716 88920902 -30823996 + MER47B DNA MER2_type 220 414 -4 1014 142 30 10 chr13 88922124 88922321 -30822577 - L1MA4 LINE L1 -13 6287 6087 209 185 0 77 chr13 88922577 88922642 -30822256 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 2742 199 38 41 chr13 88922912 88923247 -30821651 - MER82 DNA MER2_type -1 652 318 204 97 0 0 chr13 88923247 88923278 -30821620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2742 199 38 41 chr13 88923278 88923595 -30821303 - MER82 DNA MER2_type -335 318 2 1293 196 85 47 chr13 88924328 88924670 -30820228 + MLT2F LTR ERVL 307 661 -2 29 47 0 0 chr13 88924725 88924768 -30820130 + AT_rich Low_complexity Low_complexity 1 43 0 2134 110 49 26 chr13 88925450 88925795 -30819103 - THE1A LTR MaLR 0 355 3 183 156 0 0 chr13 88925835 88925867 -30819031 + (TA)n Simple_repeat Simple_repeat 1 32 0 363 96 0 0 chr13 88925881 88925933 -30818965 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 992 173 0 17 chr13 88925933 88926106 -30818792 - AluSg/x SINE Alu -23 287 118 4231 72 14 0 chr13 88926624 88927192 -30817706 - L1PA8 LINE L1 -13 6159 5584 22 0 0 0 chr13 88927766 88927788 -30817110 + AT_rich Low_complexity Low_complexity 1 22 0 23 86 0 0 chr13 88928002 88928060 -30816838 + AT_rich Low_complexity Low_complexity 1 58 0 234 0 0 0 chr13 88928172 88928198 -30816700 + (GA)n Simple_repeat Simple_repeat 2 27 0 503 302 83 6 chr13 88928198 88928367 -30816531 - MIR SINE MIR -79 183 2 22 0 0 0 chr13 88928885 88928907 -30815991 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 88929006 88929034 -30815864 + AT_rich Low_complexity Low_complexity 1 28 0 2088 122 3 7 chr13 88930829 88931125 -30813773 - AluSc SINE Alu -14 295 1 198 71 0 0 chr13 88932101 88932129 -30812769 + (CA)n Simple_repeat Simple_repeat 2 29 0 215 375 12 0 chr13 88932468 88932548 -30812350 - L2 LINE L2 -195 3077 2997 1954 133 0 4 chr13 88933120 88933432 -30811466 - AluSx SINE Alu 0 315 5 198 71 0 0 chr13 88933790 88933818 -30811080 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 22 56 0 0 chr13 88935354 88935390 -30809508 + AT_rich Low_complexity Low_complexity 1 36 0 1008 199 22 92 chr13 88935562 88935833 -30809065 + MER41C LTR ERV1 2 253 -301 * 2791 188 4 2 chr13 88935822 88936328 -30808570 + MER41B LTR ERV1 129 635 0 865 318 39 0 chr13 88936328 88936560 -30808338 - MER119 DNA MER1_type -342 241 1 319 236 96 90 chr13 88937092 88937270 -30807628 + MLT1H1 LTR MaLR 1 179 -376 408 237 116 52 chr13 88937615 88937788 -30807110 + LTR40a LTR ERVL 17 200 -319 * 491 285 107 63 chr13 88937767 88938150 -30806748 + LTR40a LTR ERVL 120 519 0 21 36 0 0 chr13 88940037 88940065 -30804833 + AT_rich Low_complexity Low_complexity 1 28 0 250 230 11 11 chr13 88940809 88940896 -30804002 + (TA)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr13 88940993 88941014 -30803884 + AT_rich Low_complexity Low_complexity 1 21 0 2027 125 90 3 chr13 88941104 88941481 -30803417 + L1MA8 LINE L1 5880 6289 -2 2292 96 3 0 chr13 88942327 88942628 -30802270 + AluSc SINE Alu 1 302 -7 23 33 0 0 chr13 88944545 88944575 -30800323 + AT_rich Low_complexity Low_complexity 1 30 0 371 317 66 26 chr13 88944660 88944887 -30800011 - MIR SINE MIR -25 237 2 194 292 73 84 chr13 88945113 88945291 -30799607 + MIR SINE MIR 84 259 -3 431 213 21 0 chr13 88946963 88947057 -30797841 + Tigger7 DNA MER2_type 2492 2587 0 1979 126 13 3 chr13 88947202 88947503 -30797395 + AluY SINE Alu 1 304 -7 385 206 0 0 chr13 88948902 88948979 -30795919 + L1MB7 LINE L1 5520 5596 -574 1171 132 21 0 chr13 88948979 88949168 -30795730 - MER75B DNA T2_type 0 243 51 393 200 0 0 chr13 88949592 88949657 -30795241 - MER75B DNA T2_type -173 70 6 2311 211 13 26 chr13 88949690 88950226 -30794672 + L1MB7 LINE L1 5632 6160 -24 21 71 0 0 chr13 88950245 88950287 -30794611 + AT_rich Low_complexity Low_complexity 1 42 0 394 370 62 0 chr13 88950785 88950996 -30793902 - MIR SINE MIR -34 228 5 228 215 0 31 chr13 88950998 88951063 -30793835 + (TA)n Simple_repeat Simple_repeat 1 63 0 261 0 0 0 chr13 88952150 88952179 -30792719 + (CA)n Simple_repeat Simple_repeat 1 29 0 7951 34 6 2 chr13 88954785 88956508 -30788390 + L1PA5 LINE L1 4419 6150 -4 2367 64 7 0 chr13 88957173 88957468 -30787430 - AluY SINE Alu -14 297 1 267 268 12 0 chr13 88957795 88957877 -30787021 - L1ME2 LINE L1 -17 6147 6065 324 286 47 18 chr13 88957896 88958067 -30786831 - L1MEc LINE L1 -5007 2115 1940 792 210 11 45 chr13 88958073 88958249 -30786649 - FAM SINE Alu 0 49 1 315 293 102 18 chr13 88958303 88958470 -30786428 - L1MEc LINE L1 -5221 1720 1540 328 296 60 5 chr13 88958476 88958675 -30786223 - L1MEc LINE L1 -4888 1535 1326 2145 131 49 9 chr13 88961250 88961600 -30783298 - THE1B LTR MaLR 0 364 1 9849 122 30 27 chr13 88961600 88963175 -30781723 - THE1B-int LTR MaLR 0 1580 1 2262 126 43 0 chr13 88963175 88963524 -30781374 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr13 88963621 88963649 -30781249 + AT_rich Low_complexity Low_complexity 1 28 0 1445 87 16 40 chr13 88963902 88963992 -30780906 - L1M1 LINE L1 -803 5501 5410 2139 129 16 35 chr13 88963992 88964363 -30780535 - THE1B LTR MaLR 0 364 1 1445 87 16 40 chr13 88964363 88964525 -30780373 - L1M1 LINE L1 -894 5410 5255 6526 195 147 19 chr13 88965216 88966772 -30778126 + MER52A LTR ERV1 1 1755 0 946 313 85 58 chr13 88967128 88967429 -30777469 + L2 LINE L2 2404 2695 -618 5760 159 60 24 chr13 88967429 88968618 -30776280 - Tigger3b DNA MER2_type 0 1231 1 946 313 85 58 chr13 88968618 88969190 -30775708 + L2 LINE L2 2695 3304 -9 33 66 0 0 chr13 88969407 88969468 -30775430 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr13 88970037 88970067 -30774831 + AT_rich Low_complexity Low_complexity 1 30 0 231 393 62 36 chr13 88970870 88971318 -30773580 - L2 LINE L2 -381 2933 2474 180 264 170 47 chr13 88971329 88971435 -30773463 - L2 LINE L2 0 3313 3195 408 353 97 30 chr13 88971547 88972085 -30772813 - L2 LINE L2 -935 2379 1806 217 299 15 0 chr13 88972128 88972195 -30772703 - MIR SINE MIR -114 148 81 218 156 22 0 chr13 88972370 88972415 -30772483 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 28 48 0 0 chr13 88973959 88974001 -30770897 + AT_rich Low_complexity Low_complexity 1 42 0 458 352 81 24 chr13 88974165 88974574 -30770324 + L2 LINE L2 2476 2907 -407 917 240 90 35 chr13 88975038 88975286 -30769612 + MLT1E1 LTR MaLR 13 287 -367 8915 37 1 0 chr13 88975286 88977147 -30767751 - L1PA4 LINE L1 0 6155 4296 917 240 90 35 chr13 88977147 88977244 -30767654 + MLT1E1 LTR MaLR 287 377 -277 1656 226 22 3 chr13 88977251 88977622 -30767276 + L1MB8 LINE L1 5503 5880 -298 1116 174 4 53 chr13 88977627 88977892 -30767006 - L1P LINE L1 -1247 4899 4648 655 161 44 7 chr13 88977893 88978030 -30766868 + L1PA15 LINE L1 6024 6165 0 1244 225 7 0 chr13 88978030 88978310 -30766588 + L1MB8 LINE L1 5874 6155 -23 248 217 59 87 chr13 88978325 88978492 -30766406 - MLT1J LTR MaLR -29 421 263 24 0 0 0 chr13 88979813 88979837 -30765061 + AT_rich Low_complexity Low_complexity 1 24 0 192 40 0 0 chr13 88980995 88981020 -30763878 + (TC)n Simple_repeat Simple_repeat 1 25 0 1904 89 4 21 chr13 88981020 88981301 -30763597 - AluY SINE Alu -35 276 1 1655 183 34 3 chr13 88981412 88981707 -30763191 - AluJb SINE Alu -8 304 1 24 32 0 0 chr13 88981758 88981789 -30763109 + AT_rich Low_complexity Low_complexity 1 31 0 285 209 0 0 chr13 88981894 88981961 -30762937 + (CA)n Simple_repeat Simple_repeat 2 68 0 402 128 32 0 chr13 88982227 88982321 -30762577 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 31 0 0 0 chr13 88982915 88982946 -30761952 + AT_rich Low_complexity Low_complexity 1 31 0 2097 308 155 79 chr13 88983884 88984891 -30760007 + L2 LINE L2 321 1251 -2063 534 143 25 2 chr13 88984891 88984992 -30759906 - L1MB2 LINE L1 -8 6175 6051 2097 308 155 79 chr13 88984992 88985990 -30758908 + L2 LINE L2 1251 2585 -729 566 259 130 5 chr13 88985998 88986183 -30758715 + MER3 DNA MER1_type 2 209 0 2233 109 0 0 chr13 88986215 88986518 -30758380 - AluSq SINE Alu -10 303 1 2624 254 88 16 chr13 88986526 88987450 -30757448 - L1MB7 LINE L1 0 6184 5197 365 329 68 36 chr13 88987469 88987749 -30757149 + L2 LINE L2 3025 3313 0 21 0 0 0 chr13 88988421 88988442 -30756456 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 88988934 88988960 -30755938 + AT_rich Low_complexity Low_complexity 1 26 0 225 157 20 39 chr13 88989327 88989378 -30755520 + GA-rich Low_complexity Low_complexity 3 52 0 22 0 0 0 chr13 88989423 88989445 -30755453 + AT_rich Low_complexity Low_complexity 1 22 0 1589 155 49 7 chr13 88989634 88989918 -30754980 + AluSx SINE Alu 1 296 -16 24 32 0 0 chr13 88990302 88990333 -30754565 + AT_rich Low_complexity Low_complexity 1 31 0 327 239 43 68 chr13 88992148 88992265 -30752633 - L2 LINE L2 0 3313 3200 1752 153 48 43 chr13 88992578 88992951 -30751947 + THE1C LTR MaLR 1 375 0 1301 203 32 0 chr13 88992985 88993236 -30751662 - Tigger2 DNA MER2_type 0 2718 2460 3780 170 63 6 chr13 88993295 88994005 -30750893 - Tigger2 DNA MER2_type -1967 751 1 1472 158 4 37 chr13 88994005 88994276 -30750622 - Tigger2a DNA MER2_type -171 263 2 30 0 0 0 chr13 88994384 88994414 -30750484 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 88995574 88995595 -30749303 + AT_rich Low_complexity Low_complexity 1 21 0 290 310 11 11 chr13 88996954 88997041 -30747857 + MIR3 SINE MIR 105 191 -17 24 0 0 0 chr13 88997144 88997168 -30747730 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 88997226 88997255 -30747643 + AT_rich Low_complexity Low_complexity 1 29 0 2349 57 3 10 chr13 88997646 88997943 -30746955 + AluY SINE Alu 1 295 -16 3684 174 28 3 chr13 88997968 88998476 -30746422 - L1MA9 LINE L1 -6 6306 5773 351 0 0 0 chr13 88998476 88998515 -30746383 + (TG)n Simple_repeat Simple_repeat 2 40 0 3684 174 28 3 chr13 88998515 88998734 -30746164 - L1MA9 LINE L1 -539 5773 5561 23 0 0 0 chr13 88998957 88998980 -30745918 + AT_rich Low_complexity Low_complexity 1 23 0 1356 275 34 18 chr13 88999400 88999836 -30745062 - MER82 DNA MER2_type -10 643 201 656 254 29 0 chr13 89000284 89000422 -30744476 - MER82 DNA MER2_type -510 143 2 28 0 0 0 chr13 89000567 89000595 -30744303 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 89001114 89001140 -30743758 + AT_rich Low_complexity Low_complexity 1 26 0 5068 191 29 26 chr13 89001796 89003125 -30741773 - L1MC1 LINE L1 -8 6325 4984 1668 170 79 17 chr13 89003480 89003833 -30741065 + THE1C LTR MaLR 1 375 0 8792 149 36 30 chr13 89003833 89005403 -30739495 + THE1C-int LTR MaLR 1 1580 0 1589 178 55 27 chr13 89005403 89005768 -30739130 + THE1C LTR MaLR 1 375 0 237 200 0 0 chr13 89006080 89006120 -30738778 - 5S rRNA rRNA -81 40 1 26 50 0 0 chr13 89006524 89006564 -30738334 + AT_rich Low_complexity Low_complexity 1 40 0 35 41 0 0 chr13 89006941 89006990 -30737908 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr13 89007165 89007200 -30737698 + AT_rich Low_complexity Low_complexity 1 35 0 1415 200 12 0 chr13 89007200 89007445 -30737453 + L1PA15-16 LINE L1 5 252 -6597 2057 188 34 29 chr13 89007445 89007993 -30736905 + MLT2A2 LTR ERVL 1 552 -2 12373 181 25 48 chr13 89007998 89010501 -30734397 + L1PA15-16 LINE L1 251 2696 -4153 5840 8 0 3 chr13 89011917 89012579 -30732319 - L1HS LINE L1 0 6155 5496 194 355 14 50 chr13 89013033 89013174 -30731724 + MIR SINE MIR 15 150 -112 2301 193 57 32 chr13 89014765 89015366 -30729532 - L1MC2 LINE L1 -11 6333 5718 1907 212 65 21 chr13 89015533 89016180 -30728718 - L1MC2 LINE L1 -624 5720 5055 5451 226 20 48 chr13 89016285 89018321 -30726577 + L1PA15-16 LINE L1 2651 4627 -2222 360 279 45 13 chr13 89018333 89018487 -30726411 - MER104 DNA Tc2 -21 159 1 389 333 35 0 chr13 89018658 89018802 -30726096 + MIR SINE MIR 40 188 -74 308 311 34 7 chr13 89018815 89018963 -30725935 + Charlie2 DNA MER1_type 8 159 -2623 1666 256 92 36 chr13 89019102 89020053 -30724845 + Charlie2 DNA MER1_type 1858 2862 0 2250 119 0 0 chr13 89020124 89020436 -30724462 + AluSq SINE Alu 1 312 -1 298 271 85 42 chr13 89020497 89020615 -30724283 - MIR SINE MIR -110 152 30 654 206 0 22 chr13 89020797 89020933 -30723965 + FLAM_C SINE Alu 1 133 0 1242 177 40 12 chr13 89020937 89021186 -30723712 + AluJb SINE Alu 1 256 -56 397 144 24 16 chr13 89021217 89021342 -30723556 + (TA)n Simple_repeat Simple_repeat 1 126 0 2360 72 0 7 chr13 89022082 89022389 -30722509 + AluY SINE Alu 1 305 -6 2941 175 11 5 chr13 89022450 89023004 -30721894 + L1PA15 LINE L1 5609 6165 0 328 286 11 11 chr13 89023089 89023180 -30721718 - L2 LINE L2 -2 3311 3221 2104 106 0 0 chr13 89023218 89023535 -30721363 + AluSx SINE Alu 3 319 0 187 275 25 25 chr13 89023684 89023764 -30721134 + MIR SINE MIR 159 238 -24 21 36 0 0 chr13 89023953 89023981 -30720917 + AT_rich Low_complexity Low_complexity 1 28 0 282 160 21 21 chr13 89024025 89024119 -30720779 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 1848 167 10 6 chr13 89025357 89025668 -30719230 + AluJo SINE Alu 1 312 0 337 246 36 9 chr13 89026978 89027088 -30717810 + CT-rich Low_complexity Low_complexity 2 114 0 1786 140 43 10 chr13 89027102 89027402 -30717496 + AluSx SINE Alu 3 312 0 228 148 33 16 chr13 89027448 89027509 -30717389 + (TA)n Simple_repeat Simple_repeat 2 63 0 2560 199 8 10 chr13 89027707 89028205 -30716693 - LOR1a LTR ERV1 0 497 1 1758 118 4 0 chr13 89029675 89029938 -30714960 - L1PA4 LINE L1 -3 6152 5889 43217 43 5 1 chr13 89030043 89036047 -30708851 - L1PA4 LINE L1 -128 6027 1 23 0 0 0 chr13 89037490 89037513 -30707385 + AT_rich Low_complexity Low_complexity 1 23 0 291 311 98 49 chr13 89038255 89038438 -30706460 + MIR SINE MIR 1 192 -70 674 210 57 52 chr13 89038439 89038668 -30706230 - MER106A DNA MER1_type 0 236 7 21 49 0 49 chr13 89038794 89038855 -30706043 + AT_rich Low_complexity Low_complexity 1 58 0 320 294 28 28 chr13 89039402 89039582 -30705316 + L1MEd LINE L1 1043 1222 -4897 2247 108 3 0 chr13 89040227 89040534 -30704364 + AluSc SINE Alu 1 308 -1 21 0 0 0 chr13 89040867 89040888 -30704010 + AT_rich Low_complexity Low_complexity 1 21 0 319 229 0 0 chr13 89041008 89041069 -30703829 - Tigger1 DNA MER2_type 0 2418 2358 695 212 15 0 chr13 89041070 89041202 -30703696 + AluJo SINE Alu 1 134 -178 8091 149 37 16 chr13 89041218 89042019 -30702879 - Tigger1 DNA MER2_type -975 1443 660 3198 141 24 4 chr13 89042019 89042564 -30702334 - LTR38 LTR ERV1 0 556 1 8091 149 37 16 chr13 89042564 89042874 -30702024 - Tigger1 DNA MER2_type -1758 660 358 1752 163 10 3 chr13 89042874 89043175 -30701723 + AluJo SINE Alu 1 303 -9 8091 149 37 16 chr13 89043175 89043474 -30701424 - Tigger1 DNA MER2_type -2060 358 3 35 0 0 0 chr13 89043773 89043808 -30701090 + AT_rich Low_complexity Low_complexity 1 35 0 7441 23 0 0 chr13 89044172 89045058 -30699840 - L1P1 LINE L1 -985 5161 4276 4284 27 2 3 chr13 89045058 89045705 -30699193 + L1P1 LINE L1 5141 5786 -369 23 0 0 0 chr13 89047273 89047296 -30697602 + AT_rich Low_complexity Low_complexity 1 23 0 250 293 111 52 chr13 89049449 89049910 -30694988 - HAL1 LINE L1 -867 1640 1153 10426 171 31 5 chr13 89050297 89053215 -30691683 - L1PA13 LINE L1 0 6163 3177 2762 158 104 96 chr13 89053217 89053985 -30690913 + MER52C LTR ERV1 505 1278 0 21183 138 34 64 chr13 89053985 89057766 -30687132 + MER52C-int LTR ERV1 2 3669 -3422 1295 259 83 94 chr13 89057953 89058455 -30686443 - L1MEc LINE L1 -5522 874 383 180 0 0 0 chr13 89058455 89058475 -30686423 + (TC)n Simple_repeat Simple_repeat 2 21 0 1295 259 83 94 chr13 89058475 89058810 -30686088 - L1MEc LINE L1 -6013 383 46 34 72 0 0 chr13 89059021 89059090 -30685808 + AT_rich Low_complexity Low_complexity 1 69 0 269 303 101 48 chr13 89059099 89059453 -30685445 + L1ME2 LINE L1 2864 3198 -2948 270 95 0 0 chr13 89059453 89059495 -30685403 + (TG)n Simple_repeat Simple_repeat 1 42 0 269 303 101 48 chr13 89059495 89060343 -30684555 + L1ME2 LINE L1 3198 4130 -2016 22 35 0 0 chr13 89060435 89060464 -30684434 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 89061444 89061479 -30683419 + AT_rich Low_complexity Low_complexity 1 35 0 513 318 41 33 chr13 89061821 89062066 -30682832 - MIR SINE MIR -14 248 2 10367 247 29 5 chr13 89063107 89065447 -30679451 - ERVL LTR ERVL -1119 4645 2251 24 32 0 0 chr13 89065478 89065509 -30679389 + AT_rich Low_complexity Low_complexity 1 31 0 1234 293 57 35 chr13 89065509 89066615 -30678283 + L1ME2 LINE L1 4969 6097 -67 2220 82 0 0 chr13 89066630 89066912 -30677986 + AluSc SINE Alu 1 282 -27 25 31 0 0 chr13 89067018 89067050 -30677848 + AT_rich Low_complexity Low_complexity 1 32 0 198 156 0 0 chr13 89067276 89067321 -30677577 + (TA)n Simple_repeat Simple_repeat 1 45 0 312 363 124 37 chr13 89067760 89068404 -30676494 + L2 LINE L2 1011 1710 -1604 261 274 36 12 chr13 89068470 89068554 -30676344 + L2 LINE L2 2616 2701 -613 344 320 16 8 chr13 89068563 89068688 -30676210 + L2 LINE L2 3188 3313 0 21 36 0 0 chr13 89068954 89068982 -30675916 + AT_rich Low_complexity Low_complexity 1 28 0 1678 180 7 7 chr13 89069297 89069592 -30675306 - MLT1A1 LTR MaLR -50 315 21 2369 57 44 0 chr13 89069593 89069891 -30675007 + AluY SINE Alu 1 311 0 22 0 0 0 chr13 89069891 89069913 -30674985 + AT_rich Low_complexity Low_complexity 1 22 0 1832 28 0 0 chr13 89070018 89070236 -30674662 - L1PA5 LINE L1 -4 6150 5933 21 0 0 0 chr13 89071486 89071507 -30673391 + AT_rich Low_complexity Low_complexity 1 21 0 719 223 80 56 chr13 89072199 89072450 -30672448 - MLT1F1 LTR MaLR -6 561 305 284 263 0 0 chr13 89072456 89072532 -30672366 + MLT1F1 LTR MaLR 491 566 -1 353 303 39 8 chr13 89072539 89072785 -30672113 + MLT1F1-int LTR MaLR 4 376 -995 771 340 85 57 chr13 89072850 89073624 -30671274 + ERVL LTR ERVL 2680 3475 -2289 2062 181 62 5 chr13 89073664 89074085 -30670813 - Tigger2 DNA MER2_type -1 2717 2273 294 209 45 15 chr13 89074075 89074142 -30670756 - Tigger2 DNA MER2_type -2649 69 1 * 253 253 13 38 chr13 89074142 89074221 -30670677 + LTR33 LTR ERVL 444 520 -1 2298 190 0 8 chr13 89075020 89075494 -30669404 - L1 LINE L1 -1388 4758 4289 1361 130 81 29 chr13 89076033 89076279 -30668619 + THE1B LTR MaLR 1 259 -105 199 439 53 8 chr13 89076515 89076647 -30668251 - L2 LINE L2 -46 3226 3089 1342 119 63 0 chr13 89076890 89077242 -30667656 - L1P4 LINE L1 -671 5497 5131 198 0 0 0 chr13 89077616 89077638 -30667260 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 30 45 0 0 chr13 89078218 89078262 -30666636 + AT_rich Low_complexity Low_complexity 1 44 0 21 95 0 0 chr13 89078891 89078954 -30665944 + AT_rich Low_complexity Low_complexity 1 63 0 1882 170 20 11 chr13 89079055 89079413 -30665485 + MER47A DNA MER2_type 6 366 0 409 277 96 12 chr13 89079848 89080014 -30664884 + MLT1A1 LTR MaLR 1 180 -185 236 171 0 0 chr13 89080012 89080053 -30664845 + MLT2D LTR ERVL 374 414 0 * 21 0 0 0 chr13 89080243 89080264 -30664634 + AT_rich Low_complexity Low_complexity 1 21 0 3543 115 2 4 chr13 89081091 89081603 -30663295 - MER9 LTR ERVK 0 511 1 682 298 104 22 chr13 89082027 89082661 -30662237 + L1ME3A LINE L1 3047 3732 -2414 621 222 14 35 chr13 89082700 89082844 -30662054 + Tigger7 DNA MER2_type 2 142 -563 625 262 14 0 chr13 89082949 89083094 -30661804 + Tigger7 DNA MER2_type 121 267 -466 450 189 11 11 chr13 89083100 89083190 -30661708 + Tigger7 DNA MER2_type 2401 2490 -1 1885 141 7 3 chr13 89083294 89083591 -30661307 + AluSx SINE Alu 10 307 -5 212 119 0 48 chr13 89083659 89083701 -30661197 + (CAGAGA)n Simple_repeat Simple_repeat 1 40 0 250 212 80 62 chr13 89083814 89083927 -30660971 + L1ME3A LINE L1 3849 3963 -2183 303 265 53 17 chr13 89083984 89084123 -30660775 + L1ME3A LINE L1 5536 5674 -490 423 253 90 24 chr13 89084250 89084416 -30660482 + L1ME3A LINE L1 5987 6163 -7 395 313 7 13 chr13 89084641 89084791 -30660107 - MER52A LTR ERV1 0 1755 1607 22 0 0 0 chr13 89136075 89136097 -30608801 + AT_rich Low_complexity Low_complexity 1 22 0 249 292 0 0 chr13 89136481 89136570 -30608328 + L1MC4 LINE L1 6615 6703 -1339 * 257 300 0 0 chr13 89136490 89136580 -30608318 - L1MC4 LINE L1 -1339 6703 6614 238 187 93 0 chr13 89136555 89136630 -30608268 - L1MCa LINE L1 -4362 2064 1983 * 1777 136 16 31 chr13 89137025 89137342 -30607556 + L1MA8 LINE L1 5768 6079 -212 407 296 102 27 chr13 89137956 89138142 -30606756 - MIR SINE MIR -26 236 37 303 373 24 16 chr13 89138453 89138579 -30606319 + L2 LINE L2 3137 3263 -9 186 103 0 0 chr13 89138633 89138662 -30606236 + (TG)n Simple_repeat Simple_repeat 2 30 0 2119 140 0 0 chr13 89138960 89139267 -30605631 - AluSg SINE Alu -3 307 1 356 322 110 52 chr13 89139281 89139744 -30605154 - L1MC4a LINE L1 -1333 6475 5986 814 305 58 38 chr13 89139783 89140305 -30604593 - L1MC4a LINE L1 -1914 5894 5363 359 79 254 0 chr13 89140468 89140531 -30604367 - MADE1 DNA Mariner 0 80 2 406 332 65 73 chr13 89140534 89141003 -30603895 - L2 LINE L2 -21 3292 2832 2540 57 0 0 chr13 89141003 89141304 -30603594 + AluY SINE Alu 1 301 -10 406 332 65 73 chr13 89141304 89141547 -30603351 - L2 LINE L2 -481 2832 2589 568 260 138 0 chr13 89141649 89141830 -30603068 - MIR SINE MIR -16 246 41 22 35 0 0 chr13 89142000 89142029 -30602869 + AT_rich Low_complexity Low_complexity 1 29 0 2481 214 8 108 chr13 89142804 89143625 -30601273 + L1MB7 LINE L1 5426 6164 -20 24 0 0 0 chr13 89143633 89143657 -30601241 + AT_rich Low_complexity Low_complexity 1 24 0 1758 172 17 0 chr13 89144022 89144319 -30600579 - MER1B DNA MER1_type -1 338 37 245 162 0 0 chr13 89144394 89144431 -30600467 - Alu SINE Alu -17 285 249 775 190 0 0 chr13 89144438 89144575 -30600323 - AluJo SINE Alu -175 137 1 233 147 0 0 chr13 89144600 89144634 -30600264 - Alu SINE Alu -264 38 5 2543 103 16 5 chr13 89145180 89145550 -30599348 - THE1C LTR MaLR -1 374 1 204 40 0 0 chr13 89145670 89145695 -30599203 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chr13 89145794 89145816 -30599082 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1202 309 29 11 chr13 89145933 89146312 -30598586 + HERVL40 LTR ERVL 707 1092 -4438 1899 296 33 18 chr13 89146323 89146983 -30597915 + HERVL40 LTR ERVL 2905 3574 -1956 661 201 0 15 chr13 89146985 89147119 -30597779 + FLAM_C SINE Alu 1 132 -1 1795 316 105 7 chr13 89147337 89148052 -30596846 + HERVL40 LTR ERVL 3607 4391 -1139 384 283 103 64 chr13 89148705 89149094 -30595804 + MER89-int LTR ERV1 6081 6484 -317 734 210 51 11 chr13 89149131 89149307 -30595591 - MER53 DNA DNA -6 183 1 732 254 75 0 chr13 89149314 89149515 -30595383 + HERVL40 LTR ERVL 5315 5530 0 22 70 0 0 chr13 89151205 89151248 -30593650 + AT_rich Low_complexity Low_complexity 1 43 0 2096 116 0 55 chr13 89151250 89151578 -30593320 + AluSg SINE Alu 1 310 0 25 31 0 0 chr13 89151655 89151687 -30593211 + AT_rich Low_complexity Low_complexity 1 32 0 208 261 0 58 chr13 89152851 89152920 -30591978 + L2 LINE L2 3028 3092 -221 696 297 152 25 chr13 89152969 89153410 -30591488 + LTR33A LTR ERVL 25 521 -2 22 80 0 0 chr13 89153410 89153460 -30591438 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr13 89154004 89154040 -30590858 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr13 89154396 89154434 -30590464 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr13 89155351 89155374 -30589524 + AT_rich Low_complexity Low_complexity 1 23 0 2649 182 45 131 chr13 89155576 89156442 -30588456 - MER21A LTR ERV1 -6 925 134 351 181 47 134 chr13 89156421 89156548 -30588350 - MER21A LTR ERV1 -733 198 83 * 186 227 0 0 chr13 89156558 89156602 -30588296 + (TG)n Simple_repeat Simple_repeat 2 45 0 355 292 110 18 chr13 89156888 89157107 -30587791 + MER31-int LTR ERV1 1926 2164 -2772 957 263 40 88 chr13 89157302 89158054 -30586844 + MER31-int LTR ERV1 2359 3074 -1862 22 0 0 0 chr13 89158148 89158170 -30586728 + AT_rich Low_complexity Low_complexity 1 22 0 1127 123 26 0 chr13 89158205 89158400 -30586498 + L1MA7 LINE L1 6092 6291 0 6371 72 11 3 chr13 89158454 89159847 -30585051 - L1PA8A LINE L1 0 6131 4754 16518 140 12 7 chr13 89159970 89162762 -30582136 - L1PA8A LINE L1 -1591 4555 1750 33 73 0 0 chr13 89162794 89162862 -30582036 + AT_rich Low_complexity Low_complexity 1 68 0 3248 169 27 23 chr13 89162862 89163561 -30581337 - L1MA8 LINE L1 -10 6281 5580 270 81 0 0 chr13 89163566 89163603 -30581295 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1914 242 61 91 chr13 89163623 89165915 -30578983 - L1 LINE L1 -3693 3474 1590 1263 226 149 28 chr13 89166775 89167164 -30577734 + MSTB2 LTR MaLR 22 457 0 23 54 0 0 chr13 89167423 89167460 -30577438 + AT_rich Low_complexity Low_complexity 1 37 0 1195 261 28 118 chr13 89167492 89168257 -30576641 + MER31-int LTR ERV1 3120 3815 -1121 808 254 97 35 chr13 89168276 89168359 -30576539 + MER31-int LTR ERV1 711 787 -4149 403 78 0 31 chr13 89168359 89168423 -30576475 - L1PA8 LINE L1 -8 6164 6103 808 254 97 35 chr13 89168423 89168627 -30576271 + MER31-int LTR ERV1 787 1016 -3920 746 179 0 20 chr13 89168711 89168862 -30576036 + MER67D LTR ERV1 1 148 -366 12640 177 29 3 chr13 89169058 89171229 -30573669 - L1M1 LINE L1 -5327 2238 12 1433 210 52 36 chr13 89171205 89171704 -30573194 - L1 LINE L1 -2611 4954 4448 * 233 221 105 42 chr13 89171913 89172008 -30572890 + HAL1 LINE L1 1578 1678 -829 1738 184 18 3 chr13 89172585 89172911 -30571987 - Tigger3b DNA MER2_type -721 510 180 1241 270 112 35 chr13 89172985 89173893 -30571005 - L1ME1 LINE L1 -185 5981 5006 810 197 49 22 chr13 89173893 89174018 -30570880 - MER20 DNA MER1_type 0 219 86 2484 130 50 22 chr13 89174018 89174434 -30570464 + MSTA LTR MaLR 1 428 0 810 197 49 22 chr13 89174434 89174491 -30570407 - MER20 DNA MER1_type -133 86 32 986 292 124 6 chr13 89174550 89175091 -30569807 - L1ME1 LINE L1 -1141 5005 4401 234 257 14 27 chr13 89175151 89175225 -30569673 - MER2 DNA MER2_type 0 345 273 2033 114 0 4 chr13 89175428 89175734 -30569164 - AluSc SINE Alu 0 305 1 285 294 78 17 chr13 89175756 89175936 -30568962 - L1ME1 LINE L1 -2586 3560 3370 548 232 10 0 chr13 89175987 89176086 -30568812 - FLAM_A SINE Alu -42 100 1 245 291 51 8 chr13 89176086 89176203 -30568695 - L1ME1 LINE L1 -2748 3398 3277 308 246 0 0 chr13 89176321 89176390 -30568508 + MER94 DNA DNA 3 71 -63 384 281 60 6 chr13 89178996 89179163 -30565735 - LTR37B LTR ERV1 -78 390 215 453 123 55 0 chr13 89181704 89181777 -30563121 + L1MC3 LINE L1 7684 7760 -25 348 146 0 0 chr13 89181795 89181850 -30563048 + Alu SINE Alu 1 55 -245 1918 119 11 0 chr13 89181850 89182119 -30562779 + AluSq SINE Alu 25 296 -17 24 0 0 0 chr13 89182158 89182182 -30562716 + AT_rich Low_complexity Low_complexity 1 24 0 1811 138 0 27 chr13 89182182 89182478 -30562420 + AluSx SINE Alu 1 288 -24 12883 32 10 0 chr13 89182587 89184971 -30559927 + L1PA4 LINE L1 3791 6150 -5 502 288 113 5 chr13 89185105 89185327 -30559571 + L1M4 LINE L1 3947 4192 -1954 2157 172 44 7 chr13 89185483 89185904 -30558994 + MSTB1 LTR MaLR 4 432 0 26 50 0 0 chr13 89186250 89186290 -30558608 + AT_rich Low_complexity Low_complexity 1 40 0 230 221 29 0 chr13 89186384 89186452 -30558446 - L1MC4 LINE L1 -1339 6703 6634 24 0 0 0 chr13 89188662 89188686 -30556212 + AT_rich Low_complexity Low_complexity 1 24 0 1702 197 10 17 chr13 89189216 89189603 -30555295 + LOR1b LTR ERV1 121 461 0 318 165 41 93 chr13 89190310 89190407 -30554491 + L1MB5 LINE L1 5914 6005 -169 28 29 0 0 chr13 89190515 89190550 -30554348 + AT_rich Low_complexity Low_complexity 1 35 0 216 167 0 0 chr13 89190936 89190972 -30553926 + CT-rich Low_complexity Low_complexity 1 36 0 25 75 0 0 chr13 89191006 89191059 -30553839 + AT_rich Low_complexity Low_complexity 1 53 0 2628 179 13 71 chr13 89191267 89191888 -30553010 - L1MA5 LINE L1 -2 6298 5714 1998 179 10 48 chr13 89191891 89192445 -30552453 + L1MA5 LINE L1 5158 5700 -600 444 268 6 12 chr13 89192753 89192921 -30551977 + (TA)n Simple_repeat Simple_repeat 2 168 0 232 188 50 0 chr13 89192939 89193019 -30551879 + (TA)n Simple_repeat Simple_repeat 1 84 0 739 255 171 20 chr13 89193107 89193452 -30551446 - MER57B LTR ERV1 -37 397 1 1210 273 82 45 chr13 89194570 89195152 -30549746 - L1ME1 LINE L1 -105 6061 5458 859 254 21 60 chr13 89195238 89195522 -30549376 - MER74A LTR ERVL -283 275 3 744 243 101 36 chr13 89195526 89195828 -30549070 - L1ME1 LINE L1 -720 5446 5116 1301 197 80 14 chr13 89195828 89196117 -30548781 - AluSx SINE Alu -3 309 2 744 243 101 36 chr13 89196117 89196205 -30548693 - L1ME1 LINE L1 -1050 5116 5035 1767 60 4 78 chr13 89196205 89196473 -30548425 - AluY SINE Alu -14 297 50 33 25 0 0 chr13 89196573 89196613 -30548285 + AT_rich Low_complexity Low_complexity 1 40 0 312 345 61 58 chr13 89197572 89197833 -30547065 + MIR SINE MIR 1 262 0 391 357 51 20 chr13 89198082 89198376 -30546522 + L1ME LINE L1 5401 5703 -467 193 57 57 0 chr13 89199106 89199141 -30545757 + T-rich Low_complexity Low_complexity 1 37 0 4933 93 16 4 chr13 89199141 89199839 -30545059 - L1PA8 LINE L1 -24 6148 5443 4039 111 24 6 chr13 89199970 89200637 -30544261 - L1PA8 LINE L1 -720 5434 4763 910 123 22 0 chr13 89202060 89202198 -30542700 + LOR1a LTR ERV1 357 497 0 398 229 207 0 chr13 89203049 89203189 -30541709 + MER3 DNA MER1_type 40 208 -1 1903 116 18 0 chr13 89203344 89203620 -30541278 + AluSc SINE Alu 1 281 -28 464 96 0 0 chr13 89203620 89203649 -30541249 + AluSg1 SINE Alu 1 305 0 201 39 0 0 chr13 89203779 89203805 -30541093 + (TTG)n Simple_repeat Simple_repeat 2 27 0 227 255 0 0 chr13 89204751 89204798 -30540100 + L1MEc LINE L1 204 250 -6313 1159 296 104 6 chr13 89204799 89205288 -30539610 + L1MEc LINE L1 205 741 -5822 465 267 17 14 chr13 89205279 89205449 -30539449 + L1MEc LINE L1 1365 1505 -4879 * 478 281 20 20 chr13 89205462 89205608 -30539290 + HERV16 LTR ERVL 1460 1605 -3925 288 347 65 0 chr13 89205613 89205737 -30539161 + HERV16 LTR ERVL 2542 2673 -2857 302 314 121 59 chr13 89205970 89206343 -30538555 - ERVL LTR ERVL -2960 2804 2409 659 371 18 15 chr13 89206344 89206670 -30538228 + HERV16 LTR ERVL 1257 1583 -3413 1762 142 28 0 chr13 89207048 89207330 -30537568 - MSTC LTR MaLR -2 426 137 1873 167 42 40 chr13 89207330 89207707 -30537191 + MSTB LTR MaLR 1 378 -48 3950 258 123 35 chr13 89207708 89209149 -30535749 - MSTC-int LTR MaLR -82 1569 1 313 227 27 0 chr13 89209149 89209224 -30535674 - MSTC LTR MaLR 0 428 352 * 385 175 0 0 chr13 89209223 89209286 -30535612 - MSTC LTR MaLR -365 63 1 292 345 51 3 chr13 89209286 89209493 -30535405 + HERV16 LTR ERVL 2021 2241 -2755 349 335 90 42 chr13 89209847 89210485 -30534413 + HERV16 LTR ERVL 2661 3357 -2029 340 357 52 31 chr13 89210561 89210948 -30533950 + HERV16 LTR ERVL 3136 3530 -1466 396 168 19 9 chr13 89210980 89211087 -30533811 + (TA)n Simple_repeat Simple_repeat 1 108 0 297 254 0 90 chr13 89211151 89211285 -30533613 + HERV16 LTR ERVL 3872 3993 -1661 40 37 0 0 chr13 89212694 89212748 -30532150 + AT_rich Low_complexity Low_complexity 1 54 0 352 313 104 60 chr13 89212801 89213252 -30531646 + L1MC4 LINE L1 5301 5771 -2037 21 36 0 0 chr13 89213700 89213728 -30531170 + AT_rich Low_complexity Low_complexity 1 28 0 281 229 0 42 chr13 89213794 89213890 -30531008 - L1MC4 LINE L1 -1337 6705 6614 219 220 0 0 chr13 89213890 89213940 -30530958 + (TA)n Simple_repeat Simple_repeat 2 51 0 229 264 23 0 chr13 89213945 89214032 -30530866 + L1MC4 LINE L1 6615 6703 -1339 231 167 0 0 chr13 89214037 89214079 -30530819 + (TA)n Simple_repeat Simple_repeat 1 42 0 23 68 0 0 chr13 89214107 89214151 -30530747 + AT_rich Low_complexity Low_complexity 1 44 0 810 218 41 15 chr13 89214195 89214461 -30530437 - L1MCa LINE L1 -4085 2479 2207 656 250 93 48 chr13 89214480 89214884 -30530014 - L1MCa LINE L1 -4435 2129 1615 3885 181 39 9 chr13 89214889 89215691 -30529207 - L1MA5 LINE L1 0 6300 5475 687 336 96 13 chr13 89215722 89216097 -30528801 - L1MCa LINE L1 -5639 406 1 24 53 0 0 chr13 89216235 89216273 -30528625 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr13 89216293 89216329 -30528569 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 89216490 89216511 -30528387 + AT_rich Low_complexity Low_complexity 1 21 0 4188 164 19 7 chr13 89216543 89217246 -30527652 + MER50 LTR ERV1 1 711 -23 2586 157 41 31 chr13 89217371 89217856 -30527042 + MER4B-int LTR ERV1 4127 4616 -2142 2006 165 58 3 chr13 89217857 89218220 -30526678 - MER4D-int LTR ERV1 -6143 615 233 330 98 0 0 chr13 89218386 89218437 -30526461 + (CAAAC)n Simple_repeat Simple_repeat 4 54 0 769 207 0 94 chr13 89218437 89218640 -30526258 - MER4D-int LTR ERV1 -6558 200 17 4339 159 77 20 chr13 89218660 89219514 -30525384 - MER4D LTR ERV1 0 903 1 21 0 0 0 chr13 89219933 89219954 -30524944 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 89221272 89221295 -30523603 + AT_rich Low_complexity Low_complexity 1 23 0 198 91 0 0 chr13 89221338 89221371 -30523527 + (TC)n Simple_repeat Simple_repeat 2 34 0 41 72 0 0 chr13 89222956 89223039 -30521859 + AT_rich Low_complexity Low_complexity 1 83 0 22 70 0 0 chr13 89223067 89223110 -30521788 + AT_rich Low_complexity Low_complexity 1 43 0 29 60 0 0 chr13 89223447 89223497 -30521401 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr13 89224506 89224527 -30520371 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr13 89224698 89224744 -30520154 + AT_rich Low_complexity Low_complexity 1 46 0 369 209 35 0 chr13 89225640 89225726 -30519172 - MLT1G1 LTR MaLR -506 89 1 844 172 62 48 chr13 89225996 89226150 -30518748 + MLT2C1 LTR ERVL 15 171 -226 440 331 41 0 chr13 89226150 89226319 -30518579 - MLT2C1 LTR ERVL -3 394 219 1541 109 84 49 chr13 89227291 89227575 -30517323 - AluSq SINE Alu -19 294 1 30 83 0 0 chr13 89227661 89227733 -30517165 + AT_rich Low_complexity Low_complexity 1 72 0 25 0 0 0 chr13 89227906 89227931 -30516967 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr13 89229327 89229352 -30515546 + AT_rich Low_complexity Low_complexity 1 25 0 2281 138 14 6 chr13 89229364 89229725 -30515173 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr13 89229736 89229758 -30515140 + AT_rich Low_complexity Low_complexity 1 22 0 231 263 126 32 chr13 89230221 89230316 -30514582 - MIR SINE MIR -27 235 132 5274 162 3 25 chr13 89230337 89231182 -30513716 - L1PA15 LINE L1 0 6165 5341 1919 126 7 52 chr13 89231182 89231492 -30513406 - AluSx SINE Alu -16 296 1 5274 162 3 25 chr13 89231492 89231772 -30513126 - L1PA15 LINE L1 -824 5341 5056 191 373 36 9 chr13 89231774 89231884 -30513014 - MIR SINE MIR -120 142 30 279 235 154 37 chr13 89231956 89232118 -30512780 + L1MC/D LINE L1 5092 5272 -874 303 242 102 51 chr13 89232140 89232297 -30512601 + L1MC/D LINE L1 5268 5432 -742 315 388 25 22 chr13 89232339 89232615 -30512283 + L1MC/D LINE L1 5536 5812 -547 23 78 0 0 chr13 89236621 89236672 -30508226 + AT_rich Low_complexity Low_complexity 1 51 0 277 338 61 40 chr13 89237195 89237423 -30507475 - MIR SINE MIR -25 237 5 21 36 0 0 chr13 89237711 89237739 -30507159 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr13 89239285 89239335 -30505563 + AT_rich Low_complexity Low_complexity 1 50 0 312 324 22 22 chr13 89239552 89239691 -30505207 - L1M4 LINE L1 -2660 3486 3348 21 71 0 0 chr13 89240378 89240420 -30504478 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr13 89240813 89240849 -30504049 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 89240877 89240899 -30503999 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr13 89241216 89241259 -30503639 + AT_rich Low_complexity Low_complexity 1 43 0 6741 69 2 1 chr13 89242211 89243699 -30501199 + L1PA7 LINE L1 4660 6147 -7 277 276 146 78 chr13 89243852 89244357 -30500541 + L1ME LINE L1 3508 4080 -2066 333 0 0 0 chr13 89244357 89244394 -30500504 + (CA)n Simple_repeat Simple_repeat 2 38 0 277 276 146 78 chr13 89244394 89244623 -30500275 + L1ME LINE L1 4080 4292 -1854 23 33 0 0 chr13 89244632 89244662 -30500236 + AT_rich Low_complexity Low_complexity 1 30 0 5093 166 48 34 chr13 89244793 89246785 -30498113 + L1MA5A LINE L1 4288 6295 -2 198 71 0 0 chr13 89246925 89246953 -30497945 + (TG)n Simple_repeat Simple_repeat 2 29 0 250 330 9 0 chr13 89247632 89247738 -30497160 + L1ME LINE L1 5489 5595 -567 535 300 91 6 chr13 89247739 89248059 -30496839 + L1MEc LINE L1 1624 1970 -4426 621 231 41 28 chr13 89248132 89248345 -30496553 - MER61D LTR ERV1 -10 750 338 1796 283 94 37 chr13 89248674 89250092 -30494806 + L1MEc LINE L1 2058 3547 -2668 6151 155 41 15 chr13 89250092 89250598 -30494300 - Tigger3b DNA MER2_type -1800 1228 737 2023 153 0 0 chr13 89250598 89250905 -30493993 - AluSx SINE Alu -5 307 1 6151 155 41 15 chr13 89250905 89251595 -30493303 - Tigger3b DNA MER2_type -2291 737 1 1796 283 94 37 chr13 89251595 89251798 -30493100 + L1MEc LINE L1 3547 3737 -2478 775 268 79 68 chr13 89251865 89252775 -30492123 + L1MEc LINE L1 3880 4799 -1416 431 99 14 0 chr13 89252786 89252857 -30492041 - Alu SINE Alu -16 294 223 26 0 0 0 chr13 89452897 89452923 -30291975 + AT_rich Low_complexity Low_complexity 1 26 0 1611 248 108 19 chr13 89452928 89454094 -30290804 - L1MDa LINE L1 -4053 2487 1167 755 269 36 33 chr13 89454175 89454536 -30290362 - L1MDa LINE L1 -6145 395 34 251 241 0 0 chr13 89454674 89454728 -30290170 + LTR40c LTR ERVL 1 54 -411 433 212 76 17 chr13 89454856 89454974 -30289924 + LTR40b LTR ERVL 329 453 -9 1065 330 42 38 chr13 89455174 89456042 -30288856 - HERV16 LTR ERVL -3806 1190 249 2171 112 7 0 chr13 89456389 89456685 -30288213 - AluSx SINE Alu -14 298 1 5490 197 12 25 chr13 89456691 89457777 -30287121 + ERVL LTR ERVL 2086 3157 -2607 23 0 0 0 chr13 89458007 89458030 -30286868 + AT_rich Low_complexity Low_complexity 1 23 0 1610 167 46 135 chr13 89458044 89458631 -30286267 + LTR18B LTR ERVL 1 535 -79 2387 154 10 8 chr13 89458653 89459055 -30285843 + MER57A LTR ERV1 1 403 0 205 176 0 0 chr13 89459088 89459122 -30285776 + (ATGGTG)n Simple_repeat Simple_repeat 4 37 0 197 340 0 0 chr13 89459483 89459536 -30285362 + L2 LINE L2 2601 2653 -661 27 62 0 0 chr13 89460900 89460948 -30283950 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr13 89461566 89461594 -30283304 + AT_rich Low_complexity Low_complexity 1 28 0 570 338 138 27 chr13 89461957 89462407 -30282491 - L3 LINE CR1 -454 1123 624 26 0 0 0 chr13 89462407 89462433 -30282465 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 89463032 89463057 -30281841 + AT_rich Low_complexity Low_complexity 1 25 0 7422 39 0 0 chr13 89463142 89464235 -30280663 + L1PA4 LINE L1 5062 6154 -1 2041 135 0 7 chr13 89465369 89465673 -30279225 + AluSc SINE Alu 3 304 -5 1985 128 7 7 chr13 89467171 89467475 -30277423 + AluSx SINE Alu 1 304 -8 372 121 0 0 chr13 89467599 89467657 -30277241 + AluSg/x SINE Alu 180 237 -63 21 0 0 0 chr13 89468609 89468630 -30276268 + AT_rich Low_complexity Low_complexity 1 21 0 2041 130 0 0 chr13 89469985 89470284 -30274614 - AluSx SINE Alu -13 299 1 2896 177 56 7 chr13 89470345 89470703 -30274195 - MER6A DNA MER2_type -260 605 207 261 0 0 0 chr13 89470703 89470732 -30274166 + (CA)n Simple_repeat Simple_repeat 1 29 0 2896 177 56 7 chr13 89470732 89470949 -30273949 - MER6A DNA MER2_type -658 207 2 2130 109 0 3 chr13 89471885 89472192 -30272706 + AluSx SINE Alu 1 306 0 192 77 0 0 chr13 89472255 89472281 -30272617 + (TA)n Simple_repeat Simple_repeat 2 27 0 2518 181 7 0 chr13 89472813 89473272 -30271626 - L1PB4 LINE L1 -2 6154 5693 3413 26 2 1 chr13 89473372 89473912 -30270986 - L1P2 LINE L1 -483 5672 5132 2279 148 78 8 chr13 89474081 89474481 -30270417 + MSTA LTR MaLR 1 428 0 862 280 31 52 chr13 89474588 89474974 -30269924 - L1M4 LINE L1 -6121 421 44 266 204 23 45 chr13 89475040 89475128 -30269770 - LTR37B LTR ERV1 -53 415 330 471 186 25 138 chr13 89475160 89475435 -30269463 - LTR37B LTR ERV1 -144 324 81 2247 99 3 0 chr13 89475766 89476070 -30268828 - AluSq SINE Alu -8 305 1 2328 242 119 59 chr13 89477344 89477460 -30267438 + L1MC3 LINE L1 6508 6616 -1169 186 43 0 0 chr13 89477460 89477483 -30267415 + (CA)n Simple_repeat Simple_repeat 2 24 0 2328 242 119 59 chr13 89477483 89478429 -30266469 + L1MC3 LINE L1 6616 7634 -151 252 86 0 0 chr13 89481377 89481412 -30263486 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 89482487 89482508 -30262390 + AT_rich Low_complexity Low_complexity 1 21 0 461 202 0 0 chr13 89482713 89482817 -30262081 - L1MB3 LINE L1 0 6183 6080 22 0 0 0 chr13 89483782 89483804 -30261094 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 89483901 89483922 -30260976 + AT_rich Low_complexity Low_complexity 1 21 0 267 157 0 0 chr13 89484691 89484742 -30260156 + (TG)n Simple_repeat Simple_repeat 2 52 0 1715 270 39 35 chr13 89485337 89485959 -30258939 - MLT1E3 LTR MaLR 0 624 1 22 0 0 0 chr13 89486180 89486202 -30258696 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 89486797 89486819 -30258079 + (A)n Simple_repeat Simple_repeat 1 22 0 468 0 0 0 chr13 89487093 89487145 -30257753 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 21 0 0 0 chr13 89487935 89487956 -30256942 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 89489413 89489437 -30255461 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr13 89489996 89490038 -30254860 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 89490167 89490188 -30254710 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 89491248 89491268 -30253630 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr13 89491391 89491420 -30253478 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chr13 89491463 89491519 -30253379 + AT_rich Low_complexity Low_complexity 1 56 0 565 66 44 0 chr13 89492365 89492456 -30252442 + AluS SINE Alu 1 95 -218 235 141 31 0 chr13 89492557 89492621 -30252277 + (TA)n Simple_repeat Simple_repeat 2 67 0 4513 179 41 33 chr13 89492812 89493767 -30251131 - L1PB4 LINE L1 -18 6138 5150 189 0 0 0 chr13 89493767 89493788 -30251110 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4513 179 41 33 chr13 89493788 89494134 -30250764 - L1PB4 LINE L1 -1006 5150 4808 426 330 67 14 chr13 89494141 89494530 -30250368 + HERV16 LTR ERVL 1837 2268 -2728 22 70 0 0 chr13 89494535 89494578 -30250320 + AT_rich Low_complexity Low_complexity 1 43 0 503 141 0 0 chr13 89494635 89494713 -30250185 + AluS SINE Alu 1 78 -232 23 54 0 0 chr13 89494813 89494850 -30250048 + GC_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr13 89494863 89494883 -30250015 + (A)n Simple_repeat Simple_repeat 1 20 0 5993 54 3 3 chr13 89495851 89496607 -30248291 - L1PA8 LINE L1 0 6172 5417 21 0 0 0 chr13 89498973 89498994 -30245904 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 89500755 89500790 -30244108 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 89501013 89501042 -30243856 + AT_rich Low_complexity Low_complexity 1 29 0 22 80 0 0 chr13 89501152 89501202 -30243696 + AT_rich Low_complexity Low_complexity 1 50 0 1829 138 0 4 chr13 89501381 89501649 -30243249 - AluSx SINE Alu -45 267 1 1292 234 143 29 chr13 89501835 89502288 -30242610 - MLT1D LTR MaLR 0 505 1 2239 113 3 0 chr13 89502464 89502773 -30242125 - AluSq SINE Alu -1 312 3 28 29 0 0 chr13 89502876 89502911 -30241987 + AT_rich Low_complexity Low_complexity 1 35 0 3544 160 63 23 chr13 89503252 89503935 -30240963 + MER50 LTR ERV1 1 710 -24 285 143 0 20 chr13 89503938 89503987 -30240911 + MER50-int LTR ERV1 2 49 -7156 223 24 0 71 chr13 89504359 89504401 -30240497 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1508 118 4 34 chr13 89504933 89505170 -30239728 + AluSx SINE Alu 1 230 -82 228 35 0 0 chr13 89505194 89505223 -30239675 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 217 314 52 58 chr13 89505829 89505988 -30238910 - MIR SINE MIR -66 196 40 21 71 0 0 chr13 89506013 89506055 -30238843 + AT_rich Low_complexity Low_complexity 1 42 0 932 142 0 0 chr13 89506101 89506235 -30238663 - AluSq/x SINE Alu -178 134 1 21 36 0 0 chr13 89506367 89506395 -30238503 + AT_rich Low_complexity Low_complexity 1 28 0 2102 120 0 7 chr13 89506745 89507045 -30237853 + AluSx SINE Alu 3 300 -12 30 45 0 0 chr13 89508574 89508618 -30236280 + AT_rich Low_complexity Low_complexity 1 44 0 6049 52 3 4 chr13 89508697 89509473 -30235425 - L1PA4 LINE L1 -853 5293 4519 6890 42 3 6 chr13 89509473 89510337 -30234561 + L1PA4 LINE L1 5291 6153 -2 250 287 84 35 chr13 89510608 89510751 -30234147 - L1MEd LINE L1 -5967 152 3 1847 178 0 7 chr13 89510939 89511242 -30233656 - AluJb SINE Alu -10 302 2 703 168 0 70 chr13 89512224 89512367 -30232531 + AluJo SINE Alu 39 171 -141 22 0 0 0 chr13 89512521 89512543 -30232355 + AT_rich Low_complexity Low_complexity 1 22 0 266 250 15 0 chr13 89512591 89512659 -30232239 - L2 LINE L2 -1 3312 3244 6052 114 8 0 chr13 89513083 89514111 -30230787 - L1PA12 LINE L1 -2 6166 5132 1943 201 0 2 chr13 89514113 89514515 -30230383 + L1P LINE L1 4307 4707 -1439 302 255 0 69 chr13 89515590 89515692 -30229206 - L1MC4 LINE L1 -1334 6708 6614 2144 116 0 7 chr13 89515800 89516093 -30228805 + AluSc SINE Alu 1 291 -18 595 213 49 49 chr13 89517204 89517368 -30227530 + AluJo SINE Alu 105 268 -44 1945 132 3 7 chr13 89517848 89518135 -30226763 + AluSg1 SINE Alu 1 286 -23 294 254 31 8 chr13 89518884 89519014 -30225884 - L1 LINE L1 -1759 4387 4255 189 0 0 0 chr13 89519185 89519206 -30225692 + (T)n Simple_repeat Simple_repeat 1 21 0 2074 133 0 3 chr13 89519232 89519540 -30225358 + AluSx SINE Alu 1 307 -5 2292 77 30 0 chr13 89519934 89520231 -30224667 + AluY SINE Alu 1 306 -5 1100 144 11 0 chr13 89520332 89520512 -30224386 - AluSq SINE Alu -5 308 127 1240 243 73 71 chr13 89520517 89520958 -30223940 - L1 LINE L1 -2378 3768 3323 1756 131 3 54 chr13 89520958 89521272 -30223626 - AluSq SINE Alu 0 313 16 1240 243 73 71 chr13 89521272 89521693 -30223205 - L1 LINE L1 -2823 3323 2904 25 0 0 0 chr13 89521856 89521881 -30223017 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr13 89523145 89523178 -30221720 + AT_rich Low_complexity Low_complexity 1 33 0 1435 232 30 19 chr13 89523253 89523623 -30221275 - MLT1A2 LTR MaLR 0 374 1 643 308 74 49 chr13 89524518 89525047 -30219851 + L1MCc LINE L1 25 566 -5857 398 249 22 87 chr13 89525054 89525239 -30219659 + L1ME1 LINE L1 5988 6160 -6 1040 197 14 71 chr13 89525337 89525632 -30219266 + L1MA9 LINE L1 5917 6194 -118 363 141 16 0 chr13 89525622 89525686 -30219212 - L1 LINE L1 -1019 6546 6482 * 1940 182 57 5 chr13 89525689 89526057 -30218841 + MSTA LTR MaLR 1 387 -41 550 141 0 0 chr13 89526063 89526148 -30218750 - AluSg/x SINE Alu -12 300 216 45 34 0 0 chr13 89526306 89526365 -30218533 + AT_rich Low_complexity Low_complexity 1 59 0 8980 185 27 12 chr13 89526367 89529683 -30215215 - L1 LINE L1 -1720 5845 2477 1346 178 7 81 chr13 89529694 89530003 -30214895 - AluJb SINE Alu -20 292 7 2336 113 8 3 chr13 89530009 89530388 -30214510 - L1 LINE L1 -5071 2494 2114 * 6284 189 17 19 chr13 89530385 89531562 -30213336 - L1 LINE L1 -6368 1197 24 21 0 0 0 chr13 89531757 89531778 -30213120 + AT_rich Low_complexity Low_complexity 1 21 0 311 157 14 0 chr13 89532029 89532099 -30212799 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1422 244 146 55 chr13 89532111 89532619 -30212279 + MLT2B3 LTR ERVL 1 554 0 4219 167 48 23 chr13 89532661 89533781 -30211117 + L1MA8 LINE L1 5026 6174 -117 1075 244 12 43 chr13 89533784 89534108 -30210790 - MLT1A2 LTR MaLR -26 348 35 508 27 27 14 chr13 89534108 89534182 -30210716 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 342 234 32 0 chr13 89534345 89534439 -30210459 - L1MDa LINE L1 -6426 114 18 3970 190 18 30 chr13 89534457 89535304 -30209594 - L1MC1 LINE L1 -5 6328 5492 266 286 11 87 chr13 89535430 89535615 -30209283 - MLT1H LTR MaLR -3 546 376 314 343 15 22 chr13 89535917 89536051 -30208847 + L2 LINE L2 2286 2418 -896 973 228 55 64 chr13 89536337 89536683 -30208215 + MLT2C1 LTR ERVL 3 345 -52 267 31 0 0 chr13 89536683 89536715 -30208183 + (TC)n Simple_repeat Simple_repeat 1 32 0 1238 215 4 8 chr13 89536716 89536972 -30207926 - MLT2D LTR ERVL -157 257 3 1024 204 9 19 chr13 89536973 89537189 -30207709 - ERVL-D LTR ERVL -6 5758 5545 2510 177 72 28 chr13 89537245 89537776 -30207122 - MLT2B3 LTR ERVL 0 554 1 3545 197 62 8 chr13 89537781 89538506 -30206392 - ERVL-D LTR ERVL -209 5555 4792 25 65 0 0 chr13 89539542 89539588 -30205310 + AT_rich Low_complexity Low_complexity 1 46 0 728 258 146 36 chr13 89540579 89540908 -30203990 - MLT1A1 LTR MaLR 0 365 1 2254 122 3 0 chr13 89541411 89541723 -30203175 - AluSq SINE Alu 0 313 1 28 61 0 0 chr13 89541777 89541826 -30203072 + AT_rich Low_complexity Low_complexity 1 49 0 4166 121 24 9 chr13 89542565 89543200 -30201698 - LTR9B LTR ERV1 0 644 1 1728 226 33 8 chr13 89543719 89544081 -30200817 - MLT1A1 LTR MaLR -3 362 1 345 245 54 48 chr13 89544112 89544259 -30200639 - AluJb SINE Alu -10 292 145 21 89 0 0 chr13 89544310 89544366 -30200532 + AT_rich Low_complexity Low_complexity 1 56 0 4893 84 21 0 chr13 89544367 89545031 -30199867 - L1PA12 LINE L1 -15 6153 5476 465 268 134 82 chr13 89545163 89545529 -30199369 - L2 LINE L2 -340 2974 2590 3369 69 2 7 chr13 89546862 89547312 -30197586 + LTR7 LTR ERV1 1 448 -2 16115 92 21 28 chr13 89547314 89550513 -30194385 + HERVH LTR ERV1 1 2992 -4721 882 118 49 0 chr13 89550499 89550643 -30194255 + HERVH LTR ERV1 3140 3290 -4423 * 3391 113 0 6 chr13 89550633 89551138 -30193760 + HERVH LTR ERV1 3492 3993 -3720 4230 142 8 5 chr13 89551140 89551800 -30193098 + HERVH LTR ERV1 4488 5149 -2564 1426 125 19 0 chr13 89551801 89552017 -30192881 + HERVH LTR ERV1 5600 5819 -1894 * 2224 83 100 14 chr13 89552015 89552376 -30192522 + HERVH LTR ERV1 7322 7713 0 3384 64 2 7 chr13 89552376 89552826 -30192072 + LTR7 LTR ERV1 1 448 -2 1001 113 0 13 chr13 89553753 89553903 -30190995 - AluSg/x SINE Alu -1 311 164 5281 220 33 15 chr13 89553967 89555115 -30189783 + MSTB-int LTR MaLR 445 1613 -38 2081 179 36 31 chr13 89555115 89555663 -30189235 - MLT2A2 LTR ERVL 0 554 1 2131 208 19 5 chr13 89555705 89556124 -30188774 + MSTB LTR MaLR 1 425 -1 814 309 0 12 chr13 89556128 89556371 -30188527 + MLT-int LTR MaLR 325 564 -1171 617 214 57 14 chr13 89556421 89556561 -30188337 + AluJb SINE Alu 158 303 -9 532 284 107 29 chr13 89556582 89556828 -30188070 + MLT-int LTR MaLR 579 787 -864 8451 197 45 24 chr13 89556838 89557555 -30187343 - L1 LINE L1 -1339 6226 5525 2062 107 0 38 chr13 89557555 89557872 -30187026 - AluSc SINE Alu 0 309 5 8451 197 45 24 chr13 89557872 89558871 -30186027 - L1 LINE L1 -2040 5525 4456 1964 120 0 56 chr13 89558871 89559195 -30185703 - AluSx SINE Alu -6 306 1 8451 197 45 24 chr13 89559195 89559589 -30185309 - L1 LINE L1 -3109 4456 4072 * 12447 158 28 27 chr13 89559567 89560682 -30184216 - L1 LINE L1 -4116 3449 2336 6696 65 13 0 chr13 89560682 89561665 -30183233 - L1PA7 LINE L1 -1 6153 5164 12447 158 28 27 chr13 89561665 89562889 -30182009 - L1 LINE L1 -5229 2336 1109 814 235 6 0 chr13 89563031 89563197 -30181701 - FRAM SINE Alu -14 162 1 495 248 15 23 chr13 89563205 89563338 -30181560 + MSTD LTR MaLR 59 190 -206 22 0 0 0 chr13 89563640 89563662 -30181236 + AT_rich Low_complexity Low_complexity 1 22 0 1776 82 8 8 chr13 89563909 89564154 -30180744 + AluY SINE Alu 60 304 -7 4980 149 55 7 chr13 89564959 89565874 -30179024 + L1MA4 LINE L1 5328 6286 -14 27 49 0 0 chr13 89566714 89566755 -30178143 + AT_rich Low_complexity Low_complexity 1 41 0 2241 80 7 10 chr13 89567821 89568121 -30176777 - AluSg SINE Alu -11 299 1 22 56 0 0 chr13 89568434 89568470 -30176428 + AT_rich Low_complexity Low_complexity 1 36 0 30 27 0 0 chr13 89568873 89568910 -30175988 + AT_rich Low_complexity Low_complexity 1 37 0 195 42 0 0 chr13 89569090 89569114 -30175784 + (TA)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr13 89569264 89569301 -30175597 + AT_rich Low_complexity Low_complexity 1 37 0 764 167 42 0 chr13 89569766 89569910 -30174988 + MLT2B2 LTR ERVL 1 150 -365 966 184 0 25 chr13 89569936 89570132 -30174766 + MLT2B2 LTR ERVL 325 515 0 1024 258 96 9 chr13 89570133 89570467 -30174431 + ERVL-B2 LTR ERVL 2 364 -5400 2875 133 16 73 chr13 89570476 89571023 -30173875 + LTR8 LTR ERV1 1 516 -175 2170 65 3 24 chr13 89571037 89571330 -30173568 - AluY SINE Alu -24 287 1 3857 207 54 32 chr13 89571387 89572242 -30172656 + MER52A LTR ERV1 882 1755 0 23 0 0 0 chr13 89572619 89572642 -30172256 + AT_rich Low_complexity Low_complexity 1 23 0 30 97 0 0 chr13 89572718 89572811 -30172087 + AT_rich Low_complexity Low_complexity 1 93 0 23 0 0 0 chr13 89573172 89573195 -30171703 + AT_rich Low_complexity Low_complexity 1 23 0 326 312 51 19 chr13 89573400 89573557 -30171341 - L1MC4 LINE L1 -1123 6919 6758 2164 108 0 0 chr13 89573848 89574135 -30170763 + AluSg SINE Alu 1 287 -23 27 0 0 0 chr13 89574135 89574162 -30170736 + AT_rich Low_complexity Low_complexity 1 27 0 421 371 42 21 chr13 89574398 89574778 -30170120 - L2 LINE L2 -655 2659 2272 28 0 0 0 chr13 89575323 89575351 -30169547 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 89575431 89575471 -30169427 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr13 89576158 89576196 -30168702 + AT_rich Low_complexity Low_complexity 1 38 0 23 78 0 0 chr13 89576316 89576367 -30168531 + AT_rich Low_complexity Low_complexity 1 51 0 31 0 0 74 chr13 89576901 89576924 -30167974 + AT_rich Low_complexity Low_complexity 1 24 -26 1239 75 0 0 chr13 89576924 89577084 -30167814 + L1PA5 LINE L1 5987 6146 -8 31 0 0 74 chr13 89577084 89577114 -30167784 + AT_rich Low_complexity Low_complexity 24 50 0 194 285 124 48 chr13 89577344 89577530 -30167368 - L2 LINE L2 -1 3312 3113 827 222 32 5 chr13 89577549 89577734 -30167164 + MLT2B1 LTR ERVL 1 190 -330 697 254 27 22 chr13 89577724 89577909 -30166989 + MLT2B1 LTR ERVL 301 486 -34 * 335 212 12 0 chr13 89577909 89577994 -30166904 + (TATG)n Simple_repeat Simple_repeat 2 87 0 203 278 42 14 chr13 89578079 89578151 -30166747 - L2 LINE L2 -212 3060 2987 1896 140 3 3 chr13 89578153 89578439 -30166459 + AluSq SINE Alu 1 286 -27 321 312 84 42 chr13 89578641 89578856 -30166042 - MER58A DNA MER1_type 0 224 1 244 204 0 0 chr13 89579387 89579436 -30165462 + (TG)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr13 89580810 89580832 -30164066 + AT_rich Low_complexity Low_complexity 1 22 0 199 313 60 52 chr13 89581078 89581212 -30163686 + MIR SINE MIR 2 136 -126 973 169 27 9 chr13 89581933 89582152 -30162746 + L1MA4 LINE L1 6072 6294 -6 24 53 0 0 chr13 89582152 89582190 -30162708 + AT_rich Low_complexity Low_complexity 1 38 0 659 105 0 0 chr13 89582386 89582481 -30162417 + AluSc SINE Alu 1 95 -214 315 194 16 0 chr13 89582510 89582572 -30162326 + Tigger5 DNA MER2_type 2261 2323 0 353 228 38 0 chr13 89582573 89582652 -30162246 - MLT1E1 LTR MaLR -572 82 1 1658 278 73 83 chr13 89582655 89584082 -30160816 - L1MEc LINE L1 -4353 2043 631 387 343 33 22 chr13 89584305 89584486 -30160412 - HERV16 LTR ERVL -3111 1885 1703 33 25 0 0 chr13 89584593 89584633 -30160265 + AT_rich Low_complexity Low_complexity 1 40 0 24 85 0 0 chr13 89586765 89586824 -30158074 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr13 89587227 89587248 -30157650 + AT_rich Low_complexity Low_complexity 1 21 0 1469 220 57 96 chr13 89588290 89588821 -30156077 + MLT2B1 LTR ERVL 1 510 -10 26 30 0 0 chr13 89589004 89589037 -30155861 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr13 89589204 89589228 -30155670 + AT_rich Low_complexity Low_complexity 1 24 0 33 43 0 0 chr13 89590103 89590150 -30154748 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr13 89591119 89591148 -30153750 + AT_rich Low_complexity Low_complexity 1 29 0 289 302 63 16 chr13 89591306 89591432 -30153466 - MER58A DNA MER1_type 0 133 2 225 279 85 8 chr13 89593591 89593720 -30151178 - L1MC4 LINE L1 -2 8040 7902 21 36 0 0 chr13 89593732 89593760 -30151138 + AT_rich Low_complexity Low_complexity 1 28 0 552 292 132 40 chr13 89593822 89594427 -30150471 + L1MC4 LINE L1 6946 7667 -205 233 81 65 0 chr13 89594441 89594503 -30150395 + (TA)n Simple_repeat Simple_repeat 1 66 0 227 257 78 0 chr13 89594524 89594687 -30150211 + L1MC5 LINE L1 7720 7925 -117 22 56 0 0 chr13 89594708 89594744 -30150154 + AT_rich Low_complexity Low_complexity 1 36 0 1812 167 0 0 chr13 89594810 89595092 -30149806 - AluSq SINE Alu -31 282 1 551 279 74 28 chr13 89595102 89595385 -30149513 + L1M4 LINE L1 2636 2931 -3215 1126 273 96 48 chr13 89595395 89595853 -30149045 - MLT1F LTR MaLR -60 482 3 944 277 108 0 chr13 89595855 89596299 -30148599 + L1M4 LINE L1 2617 3108 -3038 189 329 47 0 chr13 89596487 89596572 -30148326 + MIR SINE MIR 52 140 -122 36 53 0 0 chr13 89597885 89597942 -30146956 + AT_rich Low_complexity Low_complexity 1 57 0 11418 210 25 52 chr13 89598022 89601200 -30143698 + L1P LINE L1 1 3092 -3054 1115 145 72 38 chr13 89602329 89602591 -30142307 + L1MA8 LINE L1 6020 6290 -1 439 180 6 45 chr13 89603431 89603609 -30141289 + CT-rich Low_complexity Low_complexity 4 174 0 299 272 22 11 chr13 89603609 89603701 -30141197 + C-rich Low_complexity Low_complexity 5 97 0 207 0 0 0 chr13 89605894 89605917 -30138981 + (T)n Simple_repeat Simple_repeat 1 23 0 4885 187 74 3 chr13 89606731 89607694 -30137204 + Tigger7 DNA MER2_type 3 1033 -1454 357 265 12 0 chr13 89607686 89607769 -30137129 + Tigger7 DNA MER2_type 2408 2491 0 * 314 258 73 32 chr13 89607901 89608502 -30136396 - L1MEc LINE L1 -4974 1422 761 306 0 0 0 chr13 89608507 89608541 -30136357 + (TTA)n Simple_repeat Simple_repeat 3 36 0 969 57 21 14 chr13 89608541 89608681 -30136217 - L1PA4 LINE L1 -18 6137 5997 2622 37 3 3 chr13 89608781 89609105 -30135793 - L1PA4 LINE L1 -113 6042 5719 2154 121 6 13 chr13 89609126 89609441 -30135457 - AluSq SINE Alu 0 313 1 324 290 172 0 chr13 89609444 89609613 -30135285 - L1MEc LINE L1 -5653 743 546 454 295 0 7 chr13 89609932 89610071 -30134827 - L1MEc LINE L1 -6210 186 49 215 297 0 0 chr13 89612104 89612178 -30132720 + A-rich Low_complexity Low_complexity 1 74 0 194 286 136 34 chr13 89612344 89612491 -30132407 - MIR SINE MIR -1 261 100 211 211 0 0 chr13 89612563 89612601 -30132297 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 202 214 14 14 chr13 89612630 89612700 -30132198 + (TA)n Simple_repeat Simple_repeat 2 71 0 221 291 52 52 chr13 89612765 89612899 -30131999 - L2 LINE L2 -1 3312 3179 204 97 0 0 chr13 89613723 89613754 -30131144 + (GA)n Simple_repeat Simple_repeat 2 32 0 255 325 24 32 chr13 89613824 89613947 -30130951 + MIR SINE MIR 85 206 -56 1182 181 82 73 chr13 89615305 89615647 -30129251 + MLT1D LTR MaLR 12 356 -149 838 102 79 0 chr13 89615647 89615774 -30129124 + MER30 DNA MER1_type 1 137 -93 10135 136 36 13 chr13 89615777 89618352 -30126546 - L1PA10 LINE L1 -16 6152 3544 434 261 0 0 chr13 89618547 89618635 -30126263 - MER5A DNA MER1_type -6 183 96 270 351 93 33 chr13 89618639 89619035 -30125863 + L2 LINE L2 1766 2185 -1129 29 47 0 0 chr13 89619327 89619370 -30125528 + AT_rich Low_complexity Low_complexity 1 43 0 239 237 145 0 chr13 89619494 89619570 -30125328 - L1ME LINE L1 -345 5817 5731 350 322 47 37 chr13 89619738 89619952 -30124946 - L1ME LINE L1 -772 5470 5255 415 177 28 20 chr13 89620048 89620308 -30124590 + (TA)n Simple_repeat Simple_repeat 1 262 0 533 199 23 0 chr13 89620389 89620560 -30124338 + (TA)n Simple_repeat Simple_repeat 2 176 0 337 233 107 10 chr13 89620692 89620795 -30124103 - MER67D LTR ERV1 -43 471 359 637 210 0 7 chr13 89620795 89620933 -30123965 + L1MA8 LINE L1 6155 6291 0 1079 227 59 33 chr13 89620968 89621354 -30123544 - MER67C LTR ERV1 -259 255 4 34 55 0 0 chr13 89621570 89621625 -30123273 + AT_rich Low_complexity Low_complexity 1 55 0 26 50 0 0 chr13 89621717 89621757 -30123141 + AT_rich Low_complexity Low_complexity 1 40 0 742 148 0 0 chr13 89621793 89621908 -30122990 + THE1B LTR MaLR 181 295 -69 23 97 0 0 chr13 89621919 89621991 -30122907 + AT_rich Low_complexity Low_complexity 1 72 0 1839 183 28 11 chr13 89622276 89622631 -30122267 + THE1B LTR MaLR 4 364 0 9257 116 49 41 chr13 89622631 89624198 -30120700 + THE1B-int LTR MaLR 1 1580 0 2124 154 22 3 chr13 89624199 89624555 -30120343 + THE1B LTR MaLR 2 364 0 302 291 21 7 chr13 89624936 89625077 -30119821 - L1M4 LINE L1 -2660 3486 3344 1526 218 135 28 chr13 89625734 89626230 -30118668 + L1MA4 LINE L1 5746 6294 -6 413 152 25 13 chr13 89626445 89626551 -30118347 + AluSp/q SINE Alu 205 311 0 1671 142 195 11 chr13 89626729 89627088 -30117810 + MSTA LTR MaLR 4 428 0 2019 98 7 46 chr13 89627137 89627471 -30117427 + AluSg SINE Alu 1 322 0 23 33 0 0 chr13 89627867 89627897 -30117001 + AT_rich Low_complexity Low_complexity 1 30 0 30 59 0 0 chr13 89628165 89628216 -30116682 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr13 89628618 89628641 -30116257 + AT_rich Low_complexity Low_complexity 1 23 0 210 219 0 41 chr13 89628930 89629003 -30115895 + (CAAAC)n Simple_repeat Simple_repeat 5 74 0 1277 214 72 23 chr13 89629691 89630036 -30114862 + MLT1A1 LTR MaLR 4 365 0 950 187 0 0 chr13 89630452 89630639 -30114259 - L1MA4 LINE L1 -9 6291 6105 24 67 0 0 chr13 89630659 89630704 -30114194 + AT_rich Low_complexity Low_complexity 1 45 0 1173 193 17 45 chr13 89630742 89631032 -30113866 - L1MA4 LINE L1 -172 6128 5847 * 2010 148 42 26 chr13 89631030 89631414 -30113484 + L1MA4 LINE L1 5444 5833 -467 221 208 19 0 chr13 89632240 89632293 -30112605 + (TA)n Simple_repeat Simple_repeat 2 55 0 2350 175 21 13 chr13 89632371 89632845 -30112053 + L1MA7 LINE L1 5547 6024 -267 27 29 0 0 chr13 89633038 89633072 -30111826 + AT_rich Low_complexity Low_complexity 1 34 0 306 325 35 18 chr13 89633402 89633571 -30111327 - LTR16C LTR ERVL -8 483 312 2124 213 10 33 chr13 89634121 89634638 -30110260 - MLT1D LTR MaLR 0 505 1 261 219 351 0 chr13 89635866 89635980 -30108918 - L1ME3A LINE L1 -103 6067 5914 22 0 0 0 chr13 89636133 89636155 -30108743 + AT_rich Low_complexity Low_complexity 1 22 0 1969 139 7 0 chr13 89636522 89636824 -30108074 + AluSx SINE Alu 1 304 -8 245 241 0 0 chr13 89637219 89637273 -30107625 + MER5A DNA MER1_type 43 96 -93 1183 229 0 0 chr13 89637881 89638108 -30106790 - MER46A DNA MER2_type -9 227 1 186 143 0 0 chr13 89638704 89638739 -30106159 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 315 0 0 0 chr13 89639034 89639069 -30105829 + (CA)n Simple_repeat Simple_repeat 2 36 0 1803 197 11 22 chr13 89639700 89640060 -30104838 + MLT1A1 LTR MaLR 10 365 0 22 0 0 0 chr13 89640481 89640503 -30104395 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr13 89640572 89640604 -30104294 + AT_rich Low_complexity Low_complexity 1 32 0 316 279 38 0 chr13 89641079 89641158 -30103740 - L2 LINE L2 -3 3269 3188 248 345 71 25 chr13 89641409 89641647 -30103251 - L2 LINE L2 -379 2935 2687 5788 185 13 20 chr13 89642869 89644135 -30100763 - L1M2 LINE L1 -768 5378 4123 995 190 25 1 chr13 89644133 89644373 -30100525 + L1M2 LINE L1 5358 5621 -684 * 438 219 195 8 chr13 89644371 89644499 -30100399 + L1M2 LINE L1 5507 5658 -642 * 477 136 16 43 chr13 89644557 89644741 -30100157 + (TA)n Simple_repeat Simple_repeat 2 180 0 287 156 0 0 chr13 89644743 89644788 -30100110 + L1M2 LINE L1 5605 5649 -651 543 129 53 7 chr13 89644790 89645057 -30099841 + (TA)n Simple_repeat Simple_repeat 1 279 0 256 150 0 0 chr13 89645157 89645197 -30099701 + AluJb SINE Alu 80 119 -183 29 0 0 0 chr13 89645197 89645226 -30099672 + AT_rich Low_complexity Low_complexity 1 29 0 229 173 58 0 chr13 89645259 89645561 -30099337 + (TA)n Simple_repeat Simple_repeat 1 319 0 434 119 70 0 chr13 89645584 89645727 -30099171 + (TA)n Simple_repeat Simple_repeat 1 153 0 855 239 0 0 chr13 89645727 89645903 -30098995 + AluJb SINE Alu 132 307 -5 32 57 0 0 chr13 89645920 89645973 -30098925 + AT_rich Low_complexity Low_complexity 1 53 0 3192 148 46 5 chr13 89646419 89647029 -30097869 + LTR24C LTR ERV1 1 635 0 226 267 0 17 chr13 89647069 89647129 -30097769 - MER5A DNA MER1_type -118 71 13 384 297 32 32 chr13 89647337 89647492 -30097406 + L1MCa LINE L1 2 156 -6270 3512 155 48 6 chr13 89647596 89648221 -30096677 + MER39B LTR ERV1 3 653 0 189 74 0 0 chr13 89649073 89649100 -30095798 + (CA)n Simple_repeat Simple_repeat 2 28 0 309 42 0 83 chr13 89649111 89649159 -30095739 - MLT2A1 LTR ERVL -8 436 393 366 134 0 0 chr13 89649165 89649232 -30095666 + (TA)n Simple_repeat Simple_repeat 2 68 0 1913 81 46 0 chr13 89649232 89649492 -30095406 - MLT2A1 LTR ERVL -172 272 1 191 267 17 50 chr13 89649619 89649679 -30095219 + L2 LINE L2 3010 3067 -246 1077 161 0 17 chr13 89650500 89650680 -30094218 - AluSg/x SINE Alu -4 308 132 1621 186 7 3 chr13 89650788 89651073 -30093825 - AluSx SINE Alu -24 288 3 26 82 0 0 chr13 89651747 89651808 -30093090 + AT_rich Low_complexity Low_complexity 1 61 0 21 100 0 0 chr13 89651971 89652041 -30092857 + AT_rich Low_complexity Low_complexity 1 70 0 215 352 23 11 chr13 89652100 89652188 -30092710 - L2 LINE L2 -62 3251 3163 212 343 148 22 chr13 89652450 89652774 -30092124 - L2 LINE L2 -470 2844 2480 204 125 0 0 chr13 89653120 89653152 -30091746 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1621 164 13 27 chr13 89653654 89653953 -30090945 - AluJb SINE Alu -17 295 1 997 216 10 84 chr13 89654940 89655237 -30089661 + MER76 LTR ERV 1 275 -413 2027 171 32 0 chr13 89655354 89655700 -30089198 - MER47A DNA MER2_type -9 357 1 289 298 84 25 chr13 89655947 89656172 -30088726 + LTR16A LTR ERVL 130 423 -27 428 152 0 0 chr13 89656579 89656645 -30088253 + L1PB4 LINE L1 6021 6086 -70 22 0 0 0 chr13 89656646 89656668 -30088230 + AT_rich Low_complexity Low_complexity 1 22 0 302 78 0 20 chr13 89656765 89656816 -30088082 + (TC)n Simple_repeat Simple_repeat 1 50 0 438 281 44 22 chr13 89657437 89657572 -30087326 + MIR SINE MIR 15 152 -110 1792 244 85 87 chr13 89658529 89659376 -30085522 - MER21B LTR ERV1 -14 849 5 207 167 0 0 chr13 89660125 89660167 -30084731 + CT-rich Low_complexity Low_complexity 2 43 0 264 164 29 29 chr13 89660226 89660330 -30084568 + (TA)n Simple_repeat Simple_repeat 1 104 0 2242 144 22 8 chr13 89660698 89661067 -30083831 + THE1C LTR MaLR 2 375 0 199 111 22 22 chr13 89662463 89662508 -30082390 + GA-rich Low_complexity Low_complexity 2 46 0 22 56 0 0 chr13 89663350 89663386 -30081512 + AT_rich Low_complexity Low_complexity 1 36 0 226 356 15 38 chr13 89663815 89663947 -30080951 + MLT1I LTR MaLR 101 229 -180 1188 43 0 0 chr13 89664714 89664892 -30080006 + AluY SINE Alu 143 320 0 477 143 0 0 chr13 89665640 89665717 -30079181 - AluJ/FRAM SINE Alu -11 301 225 2568 65 0 0 chr13 89667049 89667359 -30077539 - AluY SINE Alu 0 311 2 240 130 0 0 chr13 89668297 89668343 -30076555 + (CA)n Simple_repeat Simple_repeat 1 46 0 326 287 6 28 chr13 89668609 89668790 -30076108 + (TA)n Simple_repeat Simple_repeat 2 178 0 1178 172 48 7 chr13 89669072 89669345 -30075553 + L1MA7 LINE L1 6007 6290 -1 2725 257 29 82 chr13 89670480 89671001 -30073897 + L1M4 LINE L1 1 440 -6102 198 0 0 0 chr13 89671001 89671023 -30073875 + (GA)n Simple_repeat Simple_repeat 2 23 0 2725 257 29 82 chr13 89671023 89671547 -30073351 + L1M4 LINE L1 440 990 -5552 1609 188 0 35 chr13 89671598 89671912 -30072986 + AluJo SINE Alu 1 303 -9 1964 266 31 20 chr13 89671913 89672564 -30072334 + L1M4 LINE L1 4992 5649 -995 322 285 0 90 chr13 89672714 89672858 -30072040 - L1M4 LINE L1 -592 5834 5707 399 313 42 32 chr13 89673017 89673234 -30071664 + LTR68 LTR ERV1 491 709 -31 855 265 54 44 chr13 89673261 89673763 -30071135 - L1M4 LINE L1 -2125 4281 3775 * 892 303 65 12 chr13 89673759 89674469 -30070429 - L1M4 LINE L1 -3083 3323 2510 604 184 28 14 chr13 89674481 89674622 -30070276 + L1MB1 LINE L1 6020 6162 -6 435 208 64 32 chr13 89674660 89674785 -30070113 - MLT2D LTR ERVL -203 211 83 329 379 11 6 chr13 89674828 89675002 -30069896 - L1M4 LINE L1 -5044 1365 1191 198 0 0 0 chr13 89676222 89676244 -30068654 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 5466 202 21 39 chr13 89676303 89676386 -30068512 + L1 LINE L1 3595 3678 -2468 321 93 0 0 chr13 89676386 89676440 -30068458 + (CA)n Simple_repeat Simple_repeat 1 54 0 5466 202 21 39 chr13 89676440 89677706 -30067192 + L1 LINE L1 3678 4920 -1226 435 326 95 43 chr13 89677713 89678112 -30066786 - L2 LINE L2 -561 2753 2334 198 0 0 0 chr13 89678855 89678877 -30066021 + (T)n Simple_repeat Simple_repeat 1 22 0 4893 152 89 40 chr13 89680420 89681392 -30063506 - LTR28 LTR ERV1 0 1020 1 182 61 0 30 chr13 89681412 89681445 -30063453 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 2267 100 0 0 chr13 89681560 89681861 -30063037 + AluY SINE Alu 1 301 -10 24 32 0 0 chr13 89681872 89681903 -30062995 + AT_rich Low_complexity Low_complexity 1 31 0 2654 104 0 3 chr13 89684442 89684807 -30060091 - THE1B LTR MaLR 0 364 1 3395 133 23 2 chr13 89685650 89686167 -30058731 + MER1A DNA MER1_type 1 528 -1 509 189 21 0 chr13 89738463 89738558 -30006340 + THE1C LTR MaLR 279 375 0 887 294 147 23 chr13 89738561 89739003 -30005895 + MER90 LTR ERV1 68 564 -50 233 175 62 72 chr13 89739047 89739144 -30005754 - L1ME LINE L1 -663 5501 5406 276 273 29 7 chr13 89739298 89739437 -30005461 - L1ME LINE L1 -816 5330 5189 927 273 98 41 chr13 89739541 89740419 -30004479 - L1ME LINE L1 -1118 5028 4101 2232 201 34 23 chr13 89740426 89740954 -30003944 + L1MA7 LINE L1 5758 6291 0 274 325 32 0 chr13 89740997 89741123 -30003775 - L1ME LINE L1 -2060 4086 3957 948 191 0 0 chr13 89741157 89741314 -30003584 - FRAM SINE Alu -24 152 1 339 272 115 37 chr13 89741321 89741552 -30003346 - L1ME LINE L1 -2187 3959 3711 616 369 82 28 chr13 89741758 89742733 -30002165 - HERVL LTR ERVL -2564 3200 2173 332 308 62 60 chr13 89743125 89743479 -30001419 - HERVL LTR ERVL -4085 1569 1271 1307 208 19 99 chr13 89743481 89743905 -30000993 + MLT1B LTR MaLR 1 390 0 301 327 78 15 chr13 89743972 89744177 -30000721 + L2 LINE L2 2257 2474 -840 212 306 94 12 chr13 89744221 89744306 -30000592 - L2 LINE L2 -514 2800 2709 1206 238 57 27 chr13 89744325 89744444 -30000454 - L1MB5 LINE L1 -70 6104 5990 1959 132 30 0 chr13 89744444 89744747 -30000151 - AluSx SINE Alu 0 312 1 1206 238 57 27 chr13 89744747 89745068 -29999830 - L1MB5 LINE L1 -184 5990 5651 907 226 14 18 chr13 89745270 89745487 -29999411 - L1MB5 LINE L1 -552 5628 5413 322 248 26 35 chr13 89745496 89745609 -29999289 - L1MB5 LINE L1 -861 5285 5174 2479 51 3 13 chr13 89745775 89746087 -29998811 + AluY SINE Alu 1 309 -2 21 36 0 0 chr13 89746247 89746275 -29998623 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 89746509 89746537 -29998361 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 89746746 89746769 -29998129 + AT_rich Low_complexity Low_complexity 1 23 0 2889 228 52 23 chr13 89746857 89747676 -29997222 + L1MC2 LINE L1 5493 6335 -9 1522 128 38 11 chr13 89747694 89747960 -29996938 + L1P4 LINE L1 5468 5740 -426 593 126 0 0 chr13 89747961 89748048 -29996850 - AluS SINE Alu -226 87 1 469 226 87 141 chr13 89748147 89748487 -29996411 - MER57B LTR ERV1 -86 317 1 842 351 28 26 chr13 89748488 89749069 -29995829 - MER57A-int LTR ERV1 -395 7142 6561 1331 236 64 73 chr13 89749286 89750305 -29994593 - MER57A-int LTR ERV1 -1905 3031 2392 1692 122 16 1 chr13 89750405 89750667 -29994231 + L1PB3 LINE L1 5875 6270 -23 28 0 0 0 chr13 89750695 89750723 -29994175 + AT_rich Low_complexity Low_complexity 1 28 0 216 216 0 0 chr13 89750942 89750993 -29993905 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1366 171 0 0 chr13 89751244 89751483 -29993415 - Tigger5 DNA MER2_type 0 2323 2085 267 245 0 0 chr13 89751511 89751560 -29993338 - Tigger5 DNA MER2_type -2268 55 7 414 69 0 0 chr13 89751562 89751620 -29993278 + (TG)n Simple_repeat Simple_repeat 1 58 0 25 0 0 0 chr13 89752815 89752840 -29992058 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr13 89753082 89753110 -29991788 + AT_rich Low_complexity Low_complexity 1 28 0 630 157 0 10 chr13 89753895 89753997 -29990901 - AluS SINE Alu -212 101 1 854 247 79 43 chr13 89754035 89754680 -29990218 - MER57A-int LTR ERV1 -2949 1987 1358 279 228 15 81 chr13 89754822 89754958 -29989940 - MER57A-int LTR ERV1 -400 1386 1260 744 238 33 20 chr13 89755380 89755638 -29989260 - MER57A-int LTR ERV1 -7238 299 3 689 226 64 60 chr13 89755641 89755875 -29989023 - MER57A LTR ERV1 0 403 169 341 291 26 26 chr13 89755915 89756066 -29988832 - MER57B LTR ERV1 -245 189 39 342 302 35 52 chr13 89756109 89756281 -29988617 + L1MEd LINE L1 843 1011 -5108 333 0 0 0 chr13 89756480 89756517 -29988381 + (CA)n Simple_repeat Simple_repeat 1 37 0 205 130 0 43 chr13 89756544 89756590 -29988308 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3266 45 0 0 chr13 89757095 89757494 -29987404 - L1P LINE L1 -1161 4985 4587 * 4896 30 7 3 chr13 89757473 89758071 -29986827 + L1P LINE L1 3970 4569 -1577 816 231 32 135 chr13 89758496 89758903 -29985995 - MLT1A1 LTR MaLR 0 365 1 691 197 266 74 chr13 89759109 89759606 -29985292 - LTR49 LTR ERV1 0 595 4 219 182 18 0 chr13 89759864 89759919 -29984979 + (TA)n Simple_repeat Simple_repeat 2 57 0 224 255 0 0 chr13 89759946 89759997 -29984901 + A-rich Low_complexity Low_complexity 1 51 0 183 42 0 0 chr13 89760345 89760369 -29984529 + (A)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr13 89760957 89760997 -29983901 + AT_rich Low_complexity Low_complexity 1 40 0 600 74 0 0 chr13 89761229 89761310 -29983588 + L1PA5 LINE L1 6073 6153 -1 435 119 0 0 chr13 89761990 89762057 -29982841 + (TA)n Simple_repeat Simple_repeat 2 68 0 30 45 0 0 chr13 89762609 89762653 -29982245 + AT_rich Low_complexity Low_complexity 1 44 0 180 102 34 51 chr13 89763638 89763697 -29981201 + T-rich Low_complexity Low_complexity 5 62 0 233 94 0 0 chr13 89764327 89764359 -29980539 + Alu SINE Alu 1 32 -276 1886 31 0 0 chr13 89764359 89764583 -29980315 + L1P LINE L1 4728 4951 -1195 1768 182 20 29 chr13 89764941 89765292 -29979606 + MER7A DNA MER2_type 1 346 0 1695 185 64 62 chr13 89765858 89766371 -29978527 + MER67D LTR ERV1 1 514 0 2334 88 3 0 chr13 89766636 89766943 -29977955 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr13 89768099 89768122 -29976776 + AT_rich Low_complexity Low_complexity 1 23 0 279 114 0 0 chr13 89768467 89768511 -29976387 + (AATTG)n Simple_repeat Simple_repeat 3 46 0 2340 60 7 3 chr13 89768593 89768892 -29976006 + AluY SINE Alu 1 300 -11 1252 291 33 37 chr13 89769725 89770216 -29974682 + Cheshire DNA MER1_type 1 489 -1931 1484 182 19 22 chr13 89770951 89771264 -29973634 - AluJb SINE Alu 0 312 1 41 21 0 0 chr13 89772086 89772134 -29972764 + AT_rich Low_complexity Low_complexity 1 48 0 29 0 0 0 chr13 89772236 89772265 -29972633 + AT_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr13 89772589 89772630 -29972268 + AT_rich Low_complexity Low_complexity 1 41 0 677 226 77 68 chr13 89772762 89773150 -29971748 + MLT1A1 LTR MaLR 4 365 0 1695 199 36 32 chr13 89773211 89773624 -29971274 + L1M3c LINE L1 42 1130 -5907 560 304 88 30 chr13 89773628 89774250 -29970648 - L1MEc LINE L1 -4722 1674 1017 300 310 26 0 chr13 89774304 89774417 -29970481 - L1M4 LINE L1 -840 5306 5191 826 194 79 55 chr13 89774442 89774695 -29970203 - L1MB2 LINE L1 -27 6144 5886 22 0 0 0 chr13 89774907 89774929 -29969969 + AT_rich Low_complexity Low_complexity 1 22 0 524 231 0 0 chr13 89775113 89775221 -29969677 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3079 161 79 18 chr13 89775212 89775881 -29969017 + Tigger3(Golem) DNA MER2_type 2278 2987 -42 22 0 0 0 chr13 89775881 89775903 -29968995 + AT_rich Low_complexity Low_complexity 1 22 0 846 209 0 0 chr13 89775921 89776094 -29968804 - AluJb SINE Alu 0 301 129 27 49 0 0 chr13 89776242 89776283 -29968615 + AT_rich Low_complexity Low_complexity 1 41 0 2979 275 62 20 chr13 89776616 89777945 -29966953 + L1ME3A LINE L1 2405 3789 -2357 1989 117 72 9 chr13 89777945 89778278 -29966620 - THE1A LTR MaLR 0 355 2 6583 129 30 1 chr13 89778279 89779270 -29965628 - THE1A-int LTR MaLR 0 1580 561 5063 137 23 23 chr13 89779406 89780448 -29964450 + L1PA13 LINE L1 5105 6152 -11 1450 250 75 7 chr13 89780465 89780905 -29963993 + L1ME3A LINE L1 4697 5166 -980 226 434 56 71 chr13 89781427 89781805 -29963093 + Charlie2 DNA MER1_type 2491 2862 0 552 108 57 0 chr13 89782142 89782299 -29962599 + (TA)n Simple_repeat Simple_repeat 2 167 0 636 246 91 42 chr13 89782989 89783274 -29961624 + L1ME3A LINE L1 5872 6170 0 268 273 50 30 chr13 89784894 89784993 -29959905 - L1M4 LINE L1 -2566 3580 3480 1011 322 49 26 chr13 89785043 89785655 -29959243 - L1MEc LINE L1 -5656 740 115 522 300 95 38 chr13 89786236 89786993 -29957905 - L1MC4 LINE L1 -142 7900 7101 258 325 0 0 chr13 89786995 89787075 -29957823 + CT-rich Low_complexity Low_complexity 3 82 0 23 33 0 0 chr13 89787263 89787293 -29957605 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 89787381 89787403 -29957495 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr13 89788217 89788247 -29956651 + AT_rich Low_complexity Low_complexity 1 30 0 2573 158 16 49 chr13 89788314 89788863 -29956035 - L1MB2 LINE L1 -7 6164 5634 194 0 39 0 chr13 89790101 89790127 -29954771 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 577 206 0 24 chr13 89790176 89790302 -29954596 + FRAM SINE Alu 33 155 -21 911 343 57 33 chr13 89790337 89791458 -29953440 - LTR57-int LTR ERVL -2827 2516 1528 804 211 95 39 chr13 89792109 89792341 -29952557 + MER2 DNA MER2_type 91 335 -10 266 148 19 0 chr13 89792347 89792401 -29952497 + CT-rich Low_complexity Low_complexity 3 57 0 318 71 0 0 chr13 89792437 89792479 -29952419 - MLT1A1 LTR MaLR -309 56 15 328 323 53 58 chr13 89794307 89794533 -29950365 + MIR SINE MIR 2 226 -36 26799 99 20 3 chr13 89794624 89798352 -29946546 + HERVL-A2 LTR ERVL 1863 5654 0 1970 189 42 31 chr13 89798352 89798890 -29946008 + MLT2A2 LTR ERVL 1 554 0 2472 270 91 20 chr13 89798949 89799542 -29945356 + L1MCa LINE L1 47 597 -6148 1914 169 103 5 chr13 89799542 89799932 -29944966 + MSTA LTR MaLR 1 428 0 7971 178 24 35 chr13 89799934 89801530 -29943368 + MSTA-int LTR MaLR 3 1580 0 2101 168 80 5 chr13 89801530 89801928 -29942970 + MSTA LTR MaLR 1 428 0 2472 270 91 20 chr13 89801928 89803078 -29941820 + L1MCa LINE L1 596 2036 -4709 266 96 56 208 chr13 89803252 89803311 -29941587 + L1MC3 LINE L1 6898 6930 -855 1830 138 6 38 chr13 89803311 89803631 -29941267 + AluSx SINE Alu 1 310 -2 266 96 56 208 chr13 89803631 89803696 -29941202 + L1MC3 LINE L1 6930 7003 -782 299 321 24 18 chr13 89806006 89806174 -29938724 + L1M4 LINE L1 4554 4722 -1424 1362 222 31 80 chr13 89806394 89806787 -29938111 - LTR44 LTR ERV1 0 519 151 1740 158 54 35 chr13 89806787 89807155 -29937743 - THE1C LTR MaLR 0 375 1 1362 222 31 80 chr13 89807155 89807239 -29937659 - LTR44 LTR ERV1 -368 151 65 1667 188 16 3 chr13 89807255 89807574 -29937324 - MER49 LTR ERV1 -600 323 1 22 35 0 0 chr13 89807840 89807869 -29937029 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 89807902 89807923 -29936975 + AT_rich Low_complexity Low_complexity 1 21 0 801 242 39 1 chr13 89808011 89808330 -29936568 + MLT2C1 LTR ERVL 1 430 -34 5744 149 19 9 chr13 89808376 89810039 -29934859 + L1PA14 LINE L1 4486 6158 -3 2557 4 0 0 chr13 89810067 89810404 -29934494 - AluY SINE Alu 0 337 1 1394 178 117 46 chr13 89810460 89810853 -29934045 + L1MA8 LINE L1 5869 6289 -2 333 292 78 39 chr13 89811081 89811338 -29933560 + L1ME3A LINE L1 5880 6146 -24 1599 159 74 40 chr13 89811339 89811691 -29933207 + THE1B LTR MaLR 1 364 0 27 29 0 0 chr13 89811994 89812028 -29932870 + AT_rich Low_complexity Low_complexity 1 34 0 728 258 21 0 chr13 89813676 89813862 -29931036 - MLT1B LTR MaLR 0 390 201 * 819 211 101 38 chr13 89813852 89814089 -29930809 + MER2 DNA MER2_type 91 342 -3 21 36 0 0 chr13 89814602 89814630 -29930268 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 89814667 89814695 -29930203 + AT_rich Low_complexity Low_complexity 1 28 0 210 125 0 0 chr13 89815246 89815278 -29929620 - MIR SINE MIR -107 155 124 210 204 34 45 chr13 89816549 89816637 -29928261 + (TTTA)n Simple_repeat Simple_repeat 2 88 0 27 49 0 0 chr13 89817216 89817257 -29927641 + AT_rich Low_complexity Low_complexity 1 41 0 273 246 29 0 chr13 89817257 89817326 -29927572 + CT-rich Low_complexity Low_complexity 4 74 0 264 232 0 14 chr13 89817327 89817396 -29927502 + L1MC4 LINE L1 7679 7746 -296 4422 203 38 18 chr13 89817671 89818550 -29926348 - MER54A LTR ERVL -5 896 1 244 268 216 0 chr13 89819477 89819574 -29925324 - L2 LINE L2 0 3313 3196 21 95 0 0 chr13 89819705 89819768 -29925130 + AT_rich Low_complexity Low_complexity 1 63 0 760 222 25 5 chr13 89819785 89819988 -29924910 - MER6B DNA MER2_type -1 209 3 21 36 0 0 chr13 89819998 89820026 -29924872 + AT_rich Low_complexity Low_complexity 1 28 0 249 119 0 0 chr13 89821718 89821760 -29923138 + (TG)n Simple_repeat Simple_repeat 2 43 0 957 154 37 6 chr13 89822280 89822442 -29922456 + MSTB LTR MaLR 211 377 -49 1895 99 4 11 chr13 89823554 89823816 -29921082 - AluY SINE Alu -13 298 39 266 73 24 0 chr13 89824351 89824392 -29920506 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 382 269 61 35 chr13 89824563 89824872 -29920026 + L1ME LINE L1 5482 5770 -400 4204 50 34 0 chr13 89825289 89825824 -29919074 + L1PA7 LINE L1 5597 6149 -5 5540 129 23 15 chr13 89826105 89827188 -29917710 - L1PA16 LINE L1 -10 6156 5076 667 269 18 0 chr13 89827211 89827434 -29917464 - L1P LINE L1 -978 5168 4942 307 303 100 56 chr13 89827436 89827687 -29917211 - HAL1 LINE L1 -864 1643 1382 367 273 0 0 chr13 89827756 89827855 -29917043 + LTR16B LTR ERVL 7 105 -359 342 0 0 0 chr13 89828191 89828229 -29916669 + (CA)n Simple_repeat Simple_repeat 2 39 0 914 275 146 20 chr13 89828422 89828764 -29916134 - MLT1E2 LTR MaLR 0 626 242 516 216 45 54 chr13 89828849 89829030 -29915868 + MLT1A2 LTR MaLR 1 174 -200 878 250 31 5 chr13 89829077 89829269 -29915629 + MLT1A2 LTR MaLR 172 368 -6 1736 187 0 0 chr13 89829656 89829961 -29914937 - AluJo SINE Alu -6 306 2 1818 150 40 35 chr13 89830591 89830964 -29913934 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 89831223 89831258 -29913640 + AT_rich Low_complexity Low_complexity 1 35 0 276 146 97 165 chr13 89832092 89832195 -29912703 + MER58 DNA MER1_type 4 99 -2321 422 233 10 10 chr13 89832206 89832309 -29912589 + MER58 DNA MER1_type 2318 2420 0 2606 132 19 14 chr13 89832910 89833336 -29911562 + MSTA LTR MaLR 1 428 0 627 276 11 6 chr13 89833668 89833842 -29911056 + MIR SINE MIR 49 223 -39 22 0 0 0 chr13 89834020 89834042 -29910856 + AT_rich Low_complexity Low_complexity 1 22 0 294 109 0 0 chr13 89834099 89834145 -29910753 + MADE1 DNA Mariner 35 80 0 6090 75 4 14 chr13 89834629 89835459 -29909439 + L1PA8A LINE L1 5308 6128 -3 21 0 0 0 chr13 89835607 89835628 -29909270 + AT_rich Low_complexity Low_complexity 1 21 0 1036 298 45 83 chr13 89838190 89839004 -29905894 - MER45C DNA AcHobo 0 953 1 2069 121 19 0 chr13 89839122 89839429 -29905469 + AluSq SINE Alu 1 313 0 221 361 102 31 chr13 89840469 89840793 -29904105 - L2 LINE L2 -556 2758 2412 201 162 0 0 chr13 89840799 89840836 -29904062 + (TTA)n Simple_repeat Simple_repeat 3 39 0 240 407 34 0 chr13 89840849 89840967 -29903931 + MIR SINE MIR 11 132 -130 685 120 0 19 chr13 89841121 89841229 -29903669 + AluSp/q SINE Alu 205 310 -3 25 0 0 0 chr13 89841229 89841254 -29903644 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 89841674 89841696 -29903202 + AT_rich Low_complexity Low_complexity 1 22 0 258 360 105 28 chr13 89841864 89842256 -29902642 + L2 LINE L2 2337 2758 -556 1024 136 14 12 chr13 89842502 89842780 -29902118 - MER1B DNA MER1_type 0 339 20 24 0 0 0 chr13 89842938 89842962 -29901936 + AT_rich Low_complexity Low_complexity 1 24 0 2287 274 80 10 chr13 89843423 89844445 -29900453 - L1MD1 LINE L1 -157 6085 4871 396 0 0 0 chr13 89844900 89844944 -29899954 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 30 0 0 chr13 89845111 89845144 -29899754 + AT_rich Low_complexity Low_complexity 1 33 0 262 81 0 0 chr13 89845714 89845751 -29899147 - MADE1 DNA Mariner 0 80 44 2019 116 0 58 chr13 89845764 89846092 -29898806 - AluSx SINE Alu -3 309 1 532 0 14 14 chr13 89846490 89846559 -29898339 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 29 0 0 0 chr13 89847258 89847287 -29897611 + AT_rich Low_complexity Low_complexity 1 29 0 497 322 17 45 chr13 89849187 89849476 -29895422 - MERVL LTR ERVL -2938 2547 2267 4681 146 17 65 chr13 89850022 89850907 -29893991 - L1PA16 LINE L1 -1 6165 5330 2046 140 0 9 chr13 89850907 89851222 -29893676 - AluSx SINE Alu 0 312 1 4681 146 17 65 chr13 89851222 89851461 -29893437 - L1PA16 LINE L1 -836 5330 5081 480 274 16 8 chr13 89851540 89851664 -29893234 + MER8 DNA MER2_type 3 127 -112 22 0 0 0 chr13 89852504 89852526 -29892372 + AT_rich Low_complexity Low_complexity 1 22 0 250 278 0 11 chr13 89853256 89853346 -29891552 - L1MC4 LINE L1 -1340 6702 6614 227 0 0 83 chr13 89853664 89853700 -29891198 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 207 0 0 0 chr13 89854302 89854325 -29890573 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 206 167 71 0 chr13 89854829 89854871 -29890027 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 287 296 0 0 chr13 89856753 89856824 -29888074 - MERVL LTR ERVL -3406 2124 2054 2130 327 47 39 chr13 89857080 89857322 -29887576 - MERVL LTR ERVL -3783 1747 1508 318 26 0 0 chr13 89857322 89857361 -29887537 + (CA)n Simple_repeat Simple_repeat 2 40 0 2130 327 47 39 chr13 89857361 89857677 -29887221 - MERVL LTR ERVL -4022 1508 1196 1959 132 52 19 chr13 89857677 89858040 -29886858 - THE1C LTR MaLR 0 375 1 2130 327 47 39 chr13 89858040 89858621 -29886277 - MERVL LTR ERVL -4334 1196 598 392 363 7 0 chr13 89858717 89858863 -29886035 - MERVL LTR ERVL -4969 561 415 1067 278 33 30 chr13 89858875 89859303 -29885595 - MERVL LTR ERVL -5094 436 8 243 0 0 0 chr13 89859335 89859362 -29885536 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 40914 36 3 3 chr13 89859429 89865217 -29879681 - L1PA3 LINE L1 0 6155 367 810 80 0 9 chr13 89865197 89865309 -29879589 + L1P LINE L1 154 264 -5882 * 1096 287 35 59 chr13 89865309 89865395 -29879503 - LTR40a LTR ERVL -16 503 417 1726 57 0 5 chr13 89865395 89865607 -29879291 + AluY SINE Alu 85 295 -16 1096 287 35 59 chr13 89865607 89866032 -29878866 - LTR40a LTR ERVL -102 417 4 301 310 35 0 chr13 89866076 89866192 -29878706 + L1ME1 LINE L1 6037 6156 -10 21 0 0 0 chr13 89867689 89867710 -29877188 + AT_rich Low_complexity Low_complexity 1 21 0 832 247 29 63 chr13 89868448 89868764 -29876134 - L1ME2 LINE L1 -10 6154 5850 395 294 78 26 chr13 89868875 89869028 -29875870 - MLT1E2 LTR MaLR -41 585 425 2164 124 0 0 chr13 89869039 89869337 -29875561 - AluSc SINE Alu -9 300 3 213 121 0 0 chr13 89869372 89869405 -29875493 + (T)n Simple_repeat Simple_repeat 1 33 0 1300 262 25 28 chr13 89869405 89869798 -29875100 - MLT1E2 LTR MaLR -234 392 1 22 0 0 0 chr13 89870244 89870266 -29874632 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr13 89870275 89870312 -29874586 + AT_rich Low_complexity Low_complexity 1 37 0 2884 64 13 0 chr13 89870328 89870702 -29874196 - L1PA7 LINE L1 -4 6150 5772 1377 222 73 73 chr13 89870926 89871431 -29873467 + MLT1D LTR MaLR 1 505 0 352 353 97 49 chr13 89872183 89872608 -29872290 + L2 LINE L2 2832 3276 -37 33 0 0 0 chr13 89872861 89872894 -29872004 + AT_rich Low_complexity Low_complexity 1 33 0 2086 107 0 0 chr13 89873025 89873305 -29871593 - AluSg SINE Alu -30 280 1 24 0 0 0 chr13 89874421 89874445 -29870453 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr13 89874583 89874625 -29870273 + AT_rich Low_complexity Low_complexity 1 42 0 1991 132 7 3 chr13 89875341 89875636 -29869262 - AluSq SINE Alu -17 296 1 1608 201 34 0 chr13 89875933 89876227 -29868671 + AluSx SINE Alu 2 305 -7 43 20 0 0 chr13 89876486 89876536 -29868362 + AT_rich Low_complexity Low_complexity 1 50 0 1669 197 127 18 chr13 89876819 89877205 -29867693 - MSTA LTR MaLR 0 428 1 8514 153 22 39 chr13 89877205 89878810 -29866088 - MSTA-int LTR MaLR 0 1580 3 1971 166 110 18 chr13 89878812 89879204 -29865694 - MSTA LTR MaLR 0 428 1 558 318 50 0 chr13 89880335 89880536 -29864362 - MIR SINE MIR -11 251 41 212 171 0 0 chr13 89880634 89880675 -29864223 + (TA)n Simple_repeat Simple_repeat 1 41 0 3066 110 52 12 chr13 89880678 89881159 -29863739 - L1PB1 LINE L1 -9 6142 5643 268 267 8 75 chr13 89881766 89881886 -29863012 + MLT1I LTR MaLR 249 360 -49 180 319 133 27 chr13 89881970 89882158 -29862740 + L2 LINE L2 2374 2581 -733 2260 85 0 0 chr13 89882302 89882629 -29862269 - AluY SINE Alu 0 327 1 3840 173 31 0 chr13 89882902 89883584 -29861314 - Tigger1 DNA MER2_type 0 2418 1716 * 8472 151 29 8 chr13 89883582 89885016 -29859882 - Tigger1 DNA MER2_type -931 1487 23 21 0 0 0 chr13 89886581 89886602 -29858296 + AT_rich Low_complexity Low_complexity 1 21 0 339 164 0 30 chr13 89887001 89887068 -29857830 - MER53 DNA DNA -3 186 122 833 184 6 0 chr13 89887073 89887236 -29857662 - L1MB5 LINE L1 -8 6664 6501 829 114 0 15 chr13 89887282 89887414 -29857484 + MER30 DNA MER1_type 1 130 -100 2980 252 41 29 chr13 89887430 89888653 -29856245 - L1MB5 LINE L1 -316 6356 5115 2139 102 3 0 chr13 89888653 89888968 -29855930 + AluSq SINE Alu 1 316 0 2980 252 41 29 chr13 89888968 89889405 -29855493 - L1MB5 LINE L1 -1557 5115 4685 1619 228 84 7 chr13 89889405 89889835 -29855063 - MLT1C LTR MaLR -4 463 1 780 178 19 111 chr13 89889842 89890050 -29854848 - MLT1C-int LTR MaLR -38 1333 1145 859 248 52 45 chr13 89890070 89890474 -29854424 - L1MB5 LINE L1 -5303 1239 833 294 221 16 8 chr13 89890491 89890618 -29854280 + GA-rich Low_complexity Low_complexity 1 128 0 462 318 47 27 chr13 89890651 89890909 -29853989 - L1MB5 LINE L1 -5765 777 515 423 318 78 32 chr13 89891122 89891339 -29853559 - L1MB5 LINE L1 -6275 267 41 285 264 123 0 chr13 89891385 89891491 -29853407 - MER53 DNA DNA -69 120 2 309 258 0 11 chr13 89891499 89891588 -29853310 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 218 222 0 0 chr13 89892132 89892177 -29852721 + (TA)n Simple_repeat Simple_repeat 2 46 0 939 224 112 66 chr13 89892247 89892683 -29852215 - MLT1C LTR MaLR 0 467 1 2399 69 0 3 chr13 89892883 89893187 -29851711 - AluY SINE Alu -8 303 1 272 120 20 0 chr13 89895355 89895405 -29849493 + GA-rich Low_complexity Low_complexity 1 51 0 7552 45 1 1 chr13 89895665 89897353 -29847545 + L1PA4 LINE L1 4450 6138 -17 6545 26 0 0 chr13 89897353 89898115 -29846783 + L1PA3 LINE L1 5390 6152 -3 3957 201 61 18 chr13 89899000 89899941 -29844957 + L1MC3 LINE L1 6775 7755 -30 28 0 0 0 chr13 89899955 89899983 -29844915 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 89900069 89900091 -29844807 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 89900426 89900456 -29844442 + AT_rich Low_complexity Low_complexity 1 30 0 217 374 76 38 chr13 89901212 89901343 -29843555 - L2 LINE L2 -8 3264 3129 405 0 0 0 chr13 89903445 89903490 -29841408 + (TA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr13 89903843 89903866 -29841032 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 89904420 89904450 -29840448 + AT_rich Low_complexity Low_complexity 1 30 0 245 365 127 11 chr13 89904481 89904670 -29840228 - MIR SINE MIR -21 241 31 231 103 0 0 chr13 89904707 89904746 -29840152 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr13 89905841 89905869 -29839029 + AT_rich Low_complexity Low_complexity 1 28 0 317 307 71 72 chr13 89907063 89907430 -29837468 - MLT1G LTR MaLR -36 519 144 252 320 29 0 chr13 89907536 89907639 -29837259 - MLT1G-int LTR MaLR 0 1371 1266 2101 111 54 28 chr13 89907806 89908159 -29836739 - THE1B LTR MaLR -2 362 1 10932 118 1 2 chr13 89908159 89909740 -29835158 - THE1B-int LTR MaLR 0 1580 2 2094 136 48 20 chr13 89909741 89910095 -29834803 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr13 89910421 89910451 -29834447 + AT_rich Low_complexity Low_complexity 1 30 0 404 356 64 5 chr13 89911157 89911428 -29833470 - MLT1H1 LTR MaLR 0 555 241 5372 216 46 30 chr13 89912072 89913403 -29831495 + L1MC1 LINE L1 3499 4808 -1525 3635 98 26 4 chr13 89913403 89913935 -29830963 + L1PA11 LINE L1 5625 6168 -6 5372 216 46 30 chr13 89913935 89915390 -29829508 + L1MC1 LINE L1 4808 6333 0 1069 339 28 21 chr13 89915883 89916417 -29828481 - ERVL LTR ERVL -1760 4004 3467 22 35 0 0 chr13 89916809 89916838 -29828060 + AT_rich Low_complexity Low_complexity 1 29 0 893 184 35 0 chr13 89916972 89917146 -29827752 + Tigger1 DNA MER2_type 29 208 -2210 1412 160 4 8 chr13 89917146 89917396 -29827502 + L1PA15 LINE L1 5911 6159 -6 255 280 65 56 chr13 89918256 89918363 -29826535 - L2 LINE L2 -1 3312 3205 21 89 0 0 chr13 89918540 89918596 -29826302 + AT_rich Low_complexity Low_complexity 1 56 0 4220 212 5 8 chr13 89919009 89919958 -29824940 + L1 LINE L1 3840 4785 -1361 3841 35 2 0 chr13 89920295 89920756 -29824142 + L1PA3 LINE L1 5566 6027 -128 5793 218 20 45 chr13 89920860 89921276 -29823622 - L1MEc LINE L1 -2287 3928 3503 193 29 29 29 chr13 89921276 89921311 -29823587 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5793 218 20 45 chr13 89921311 89921897 -29823001 - L1MEc LINE L1 -2712 3503 2904 2024 126 0 31 chr13 89921897 89922214 -29822684 - AluSp SINE Alu -6 307 1 5793 218 20 45 chr13 89922214 89923001 -29821897 - L1MEc LINE L1 -3311 2904 2191 2075 123 0 10 chr13 89923001 89923310 -29821588 - AluSx SINE Alu -6 306 1 5793 218 20 45 chr13 89923310 89923490 -29821408 - L1MEc LINE L1 -4024 2191 2008 5347 183 40 14 chr13 89923644 89925073 -29819825 + L1MA4A LINE L1 4192 5696 -607 3380 84 16 0 chr13 89925073 89925524 -29819374 - LTR22A LTR ERVK 0 458 1 5347 183 40 14 chr13 89925524 89926144 -29818754 + L1MA4A LINE L1 5696 6298 -5 24 0 0 0 chr13 89926891 89926915 -29817983 + AT_rich Low_complexity Low_complexity 1 24 0 1443 12 0 0 chr13 89927356 89927521 -29817377 + L1PA5 LINE L1 5981 6145 -9 2503 322 78 18 chr13 89927579 89929326 -29815572 - L1MEc LINE L1 -4438 1958 107 2039 100 0 0 chr13 89929360 89929629 -29815269 - AluSq SINE Alu -15 298 30 22 70 0 0 chr13 89929629 89929672 -29815226 + AT_rich Low_complexity Low_complexity 1 43 0 181 396 61 25 chr13 89929864 89930061 -29814837 - L2 LINE L2 -204 3068 2865 183 386 23 41 chr13 89930842 89931013 -29813885 + L2 LINE L2 2897 3064 -208 252 0 0 0 chr13 89931441 89931469 -29813429 + (TA)n Simple_repeat Simple_repeat 1 28 0 238 351 65 39 chr13 89931975 89932129 -29812769 - L2 LINE L2 -2 3270 3113 226 305 146 0 chr13 89932129 89932211 -29812687 - L2 LINE L2 -14 3299 3206 31 58 0 0 chr13 89933075 89933127 -29811771 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr13 89933157 89933180 -29811718 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 89933330 89933353 -29811545 + AT_rich Low_complexity Low_complexity 1 23 0 347 301 71 22 chr13 89933614 89933797 -29811101 - MLT1F1 LTR MaLR 0 567 376 368 274 95 69 chr13 89934128 89934592 -29810306 + L1MDb LINE L1 769 1244 -5165 556 320 87 68 chr13 89934606 89934975 -29809923 + L1M3c LINE L1 178 793 -5510 1309 258 68 52 chr13 89935483 89936355 -29808543 + L1M3c LINE L1 804 1797 -4516 571 268 27 14 chr13 89936555 89936775 -29808123 + L1MDb LINE L1 2042 2264 -4144 1959 117 14 3 chr13 89936793 89937095 -29807803 + AluSq SINE Alu 1 305 0 23 0 0 0 chr13 89937131 89937154 -29807744 + AT_rich Low_complexity Low_complexity 1 23 0 605 303 72 0 chr13 89937166 89937456 -29807442 + L1MDb LINE L1 2396 2706 -3700 * 1626 293 26 23 chr13 89937439 89937701 -29807197 + L1MDb LINE L1 2606 2866 -3540 2206 93 0 0 chr13 89937701 89937991 -29806907 + AluSx SINE Alu 1 290 -22 1626 293 26 23 chr13 89937991 89938428 -29806470 + L1MDb LINE L1 2866 3307 -3099 1664 153 23 39 chr13 89938449 89938757 -29806141 + AluSx SINE Alu 1 303 -9 2359 229 18 46 chr13 89938763 89939475 -29805423 + L1MDb LINE L1 3465 4156 -2250 2254 164 17 31 chr13 89939475 89939889 -29805009 + MSTB LTR MaLR 17 424 -2 3291 217 45 58 chr13 89939904 89940303 -29804595 + L1MDb LINE L1 4185 4588 -1818 1859 131 18 14 chr13 89940303 89940586 -29804312 + AluSx SINE Alu 11 294 -18 3291 217 45 58 chr13 89940586 89941198 -29803700 + L1MDb LINE L1 4588 5182 -1224 4125 134 40 4 chr13 89941198 89941876 -29803022 + L1PA16 LINE L1 5456 6157 -9 1489 250 102 25 chr13 89942810 89943370 -29801528 - MER92B LTR ERV1 0 636 34 273 151 198 12 chr13 89943380 89943466 -29801432 + MER21B LTR ERV1 400 501 -362 3630 203 63 30 chr13 89943480 89944178 -29800720 + L1MB2 LINE L1 5165 5929 -502 2162 91 39 0 chr13 89944178 89944464 -29800434 - AluSx SINE Alu -15 297 1 3630 203 63 30 chr13 89944464 89944985 -29799913 + L1MB2 LINE L1 5929 6431 0 1424 255 79 48 chr13 89944983 89945669 -29799229 + L1MDa LINE L1 1369 2047 -4493 * 207 0 0 0 chr13 89946705 89946728 -29798170 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 3529 203 48 37 chr13 89946782 89948270 -29796628 - L1MD1 LINE L1 -61 6181 4678 202 172 0 62 chr13 89948284 89948348 -29796550 + A-rich Low_complexity Low_complexity 1 60 0 24 53 0 0 chr13 89948628 89948666 -29796232 + AT_rich Low_complexity Low_complexity 1 38 0 240 293 24 0 chr13 89948775 89948857 -29796041 + L1MC4a LINE L1 6613 6696 -1112 241 291 23 0 chr13 89949236 89949322 -29795576 + L1MC4 LINE L1 7156 7243 -799 254 378 31 5 chr13 89949345 89949538 -29795360 + L1MC4a LINE L1 7218 7415 -393 239 261 39 31 chr13 89949628 89949758 -29795140 + L1MC4 LINE L1 7542 7672 -370 1031 253 66 10 chr13 89949900 89950204 -29794694 + LTR40b LTR ERVL 142 462 0 501 336 81 44 chr13 89950614 89951066 -29793832 - L1MD1 LINE L1 -1982 4164 3689 1801 146 11 0 chr13 89951066 89951334 -29793564 - AluSx SINE Alu -39 273 3 501 336 81 44 chr13 89951334 89951401 -29793497 - L1MD1 LINE L1 -2457 3689 3626 7071 267 25 27 chr13 89951405 89953403 -29791495 + L1M2 LINE L1 1 1994 -4855 6688 70 9 0 chr13 90054178 90055466 -29689432 - L1PA6 LINE L1 0 6154 4856 16681 72 4 2 chr13 90055750 90058015 -29686883 - L1PA6 LINE L1 -1328 4818 2550 276 273 34 23 chr13 90058088 90058176 -29686722 - L2 LINE L2 -2 3270 3182 958 63 0 0 chr13 90058178 90058304 -29686594 + L1P LINE L1 2436 2561 -3585 25 31 0 0 chr13 90058731 90058763 -29686135 + AT_rich Low_complexity Low_complexity 1 32 0 200 306 112 53 chr13 90058876 90059046 -29685852 + MIR SINE MIR 63 242 -20 259 317 7 41 chr13 90059458 90059603 -29685295 + MLT1J LTR MaLR 41 180 -331 23 0 0 0 chr13 90060308 90060331 -29684567 + AT_rich Low_complexity Low_complexity 1 23 0 595 313 42 10 chr13 90061509 90061701 -29683197 + MIR SINE MIR 20 217 -45 4114 110 42 3 chr13 90061939 90062540 -29682358 + THE1B-int LTR MaLR 957 1580 0 1864 121 69 66 chr13 90062540 90062903 -29681995 + THE1B LTR MaLR 1 364 0 1169 291 10 3 chr13 90062904 90063193 -29681705 - MLT1E3 LTR MaLR -321 303 13 4960 184 33 18 chr13 90063870 90064913 -29679985 - L1MA9 LINE L1 -1 7730 6673 1318 220 22 28 chr13 90064934 90065252 -29679646 - L1MA9 LINE L1 -1005 6560 6245 385 184 81 0 chr13 90065373 90065460 -29679438 - L1MC3 LINE L1 -219 7566 7473 371 354 36 49 chr13 90065693 90066139 -29678759 + MLT1J LTR MaLR 72 511 0 600 261 60 11 chr13 90066353 90066537 -29678361 + LTR40b LTR ERVL 270 462 0 314 361 53 32 chr13 90066628 90066913 -29677985 - HERV16 LTR ERVL -4348 648 358 237 316 89 0 chr13 90067165 90067244 -29677654 - LTR16C LTR ERVL -315 176 91 21 0 0 0 chr13 90067518 90067539 -29677359 + AT_rich Low_complexity Low_complexity 1 21 0 2133 121 3 0 chr13 90067599 90067896 -29677002 + AluSx SINE Alu 1 298 -14 467 237 21 0 chr13 90068055 90068152 -29676746 + Tigger3(Golem) DNA MER2_type 3 101 -2928 2237 139 20 15 chr13 90068191 90068600 -29676298 + Tigger3b DNA MER2_type 347 757 -474 3593 206 49 7 chr13 90068607 90069440 -29675458 - L1MA9 LINE L1 -1580 5985 5118 4174 231 52 42 chr13 90069540 90071752 -29673146 - L1MA9 LINE L1 -2643 4922 2688 3574 176 39 50 chr13 90072134 90072975 -29671923 - L1MA9 LINE L1 -216 6096 5263 6910 154 22 15 chr13 90072975 90074262 -29670636 + HSMAR2 DNA Mariner 5 1301 -1 3574 176 39 50 chr13 90074262 90074355 -29670543 - L1MA9 LINE L1 -1049 5263 5170 253 264 28 14 chr13 90074346 90074418 -29670480 - L1MCb LINE L1 -5338 707 635 * 295 296 14 28 chr13 90074404 90074546 -29670352 + HAL1 LINE L1 1583 1722 -785 1506 189 13 27 chr13 90074648 90074949 -29669949 - AluJb SINE Alu -14 298 2 216 0 0 0 chr13 90075631 90075655 -29669243 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 321 186 24 0 chr13 90075772 90075896 -29669002 + (TA)n Simple_repeat Simple_repeat 2 128 0 2361 77 3 0 chr13 90075934 90076231 -29668667 - AluY SINE Alu -13 298 1 668 169 28 0 chr13 90076862 90077004 -29667894 - L1MA8 LINE L1 -5 6286 6141 22 70 0 0 chr13 90077389 90077432 -29667466 + AT_rich Low_complexity Low_complexity 1 43 0 431 297 100 47 chr13 90078090 90078390 -29666508 + MLT1I LTR MaLR 92 407 -2 562 332 5 11 chr13 90079438 90079625 -29665273 + LTR33 LTR ERVL 27 212 -309 1559 170 95 0 chr13 90080323 90080606 -29664292 - LTR45B LTR ERV1 -177 312 3 30 0 0 0 chr13 90080821 90080851 -29664047 + AT_rich Low_complexity Low_complexity 1 30 0 2698 159 8 22 chr13 90081502 90081993 -29662905 - MER31A LTR ERV1 0 485 2 21 36 0 0 chr13 90083748 90083776 -29661122 + AT_rich Low_complexity Low_complexity 1 28 0 2259 93 10 0 chr13 90083895 90084205 -29660693 + AluSp SINE Alu 1 313 0 4042 136 34 57 chr13 90085136 90085940 -29658958 + LTR1 LTR ERV1 1 785 0 1140 255 74 34 chr13 90086413 90087005 -29657893 - MER114 LTR ERV -25 623 8 543 269 28 0 chr13 90089081 90089222 -29655676 + MLT1A1 LTR MaLR 167 311 -54 4368 12 0 0 chr13 90089222 90089719 -29655179 - L1HS LINE L1 0 6155 5659 378 140 0 0 chr13 90089723 90089780 -29655118 + MLT1A1 LTR MaLR 309 365 0 231 229 16 0 chr13 90089780 90089841 -29655057 + MIR SINE MIR 198 259 -3 409 232 0 0 chr13 90090171 90090253 -29654645 + MER45A DNA AcHobo 58 139 -39 2114 88 3 13 chr13 90090271 90090579 -29654319 - AluY SINE Alu -6 305 1 858 300 14 18 chr13 90092785 90093068 -29651830 + MER87 LTR ERV1 194 475 -66 3160 174 40 22 chr13 90093074 90093701 -29651197 + LTR9B LTR ERV1 7 644 0 243 259 0 0 chr13 90093821 90093875 -29651023 + LTR53 LTR ERVL 1 54 -465 798 149 0 0 chr13 90093976 90094097 -29650801 + THE1B LTR MaLR 44 164 -200 1949 135 0 0 chr13 90094099 90094413 -29650485 - AluSx SINE Alu 0 314 1 1119 305 49 31 chr13 90094413 90094773 -29650125 - L1M4 LINE L1 -1769 4377 4025 2577 192 19 55 chr13 90094773 90095408 -29649490 + LTR9 LTR ERV1 1 612 0 1119 305 49 31 chr13 90095408 90095761 -29649137 - L1M4 LINE L1 -2121 4025 3651 695 306 72 81 chr13 90095760 90096357 -29648541 - L1MEc LINE L1 -5081 1315 733 * 1577 149 8 0 chr13 90096357 90096599 -29648299 - AluSx SINE Alu -68 244 1 695 306 72 81 chr13 90096599 90097190 -29647708 - L1MEc LINE L1 -5663 733 138 26 30 0 0 chr13 90097546 90097579 -29647319 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr13 90097820 90097852 -29647046 + AT_rich Low_complexity Low_complexity 1 32 0 35 24 0 0 chr13 90098610 90098652 -29646246 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr13 90098828 90098853 -29646045 + AT_rich Low_complexity Low_complexity 1 25 0 4664 137 17 16 chr13 90099154 90099987 -29644911 - L1MA3 LINE L1 -15 6290 5457 2535 214 26 2 chr13 90099987 90100487 -29644411 - L1M1 LINE L1 -7044 521 10 23 33 0 0 chr13 90100487 90100517 -29644381 + AT_rich Low_complexity Low_complexity 1 30 0 2679 113 36 24 chr13 90100779 90101229 -29643669 + L1MA1 LINE L1 5846 6300 -2 22 35 0 0 chr13 90101229 90101258 -29643640 + AT_rich Low_complexity Low_complexity 1 29 0 1853 192 29 2 chr13 90101597 90102009 -29642889 - L1MA6 LINE L1 -4 6296 5874 21 0 0 0 chr13 90103202 90103223 -29641675 + AT_rich Low_complexity Low_complexity 1 21 0 530 281 9 78 chr13 90104214 90104431 -29640467 - MIR SINE MIR -27 235 34 255 399 72 49 chr13 90105654 90106043 -29638855 - L2 LINE L2 -3 3269 2872 1843 89 107 41 chr13 90106063 90106354 -29638544 + AluSx SINE Alu 1 310 -2 814 247 100 47 chr13 90106757 90107134 -29637764 - MER57A LTR ERV1 -3 399 3 2025 80 76 4 chr13 90107234 90107509 -29637389 - AluSp SINE Alu -18 295 1 25 65 0 0 chr13 90107774 90107820 -29637078 + AT_rich Low_complexity Low_complexity 1 46 0 1872 204 40 23 chr13 90108154 90108581 -29636317 + Tigger2a DNA MER2_type 1 434 0 218 253 89 13 chr13 90109322 90109401 -29635497 + MIR SINE MIR 123 207 -55 24 0 0 0 chr13 90109593 90109617 -29635281 + AT_rich Low_complexity Low_complexity 1 24 0 705 93 0 0 chr13 90109925 90110022 -29634876 + AluY SINE Alu 39 135 -176 2078 64 4 0 chr13 90110022 90110287 -29634611 + AluY SINE Alu 1 266 -45 2673 0 0 77 chr13 90110702 90111038 -29633860 - AluYa5 SINE Alu -1 310 1 244 305 42 68 chr13 90112513 90112631 -29632267 + L2 LINE L2 3158 3272 -41 240 267 33 33 chr13 90112631 90112721 -29632177 + MIR SINE MIR 116 205 -57 26 50 0 0 chr13 90112721 90112761 -29632137 + AT_rich Low_complexity Low_complexity 1 40 0 27 73 0 0 chr13 90113239 90113294 -29631604 + AT_rich Low_complexity Low_complexity 1 55 0 1254 222 75 60 chr13 90113328 90113510 -29631388 - MER65C LTR ERV1 0 461 283 4576 30 2 0 chr13 90113510 90114053 -29630845 - L1PA3 LINE L1 0 6155 5612 1254 222 75 60 chr13 90114053 90114321 -29630577 - MER65C LTR ERV1 -178 283 4 207 0 0 0 chr13 90114322 90114345 -29630553 + (TA)n Simple_repeat Simple_repeat 1 23 0 197 292 104 47 chr13 90114768 90114960 -29629938 + L2 LINE L2 1494 1696 -1618 202 306 0 0 chr13 90115258 90115320 -29629578 + MIR SINE MIR 75 136 -126 2153 83 20 3 chr13 90115381 90115681 -29629217 + AluY SINE Alu 1 305 -6 3034 91 5 0 chr13 90117021 90117452 -29627446 - L1PA7 LINE L1 -2257 3889 3457 9884 90 15 0 chr13 90117452 90119697 -29625201 + L1PA7 LINE L1 3909 6141 -13 21 36 0 0 chr13 90119964 90119992 -29624906 + AT_rich Low_complexity Low_complexity 1 28 0 284 174 0 14 chr13 90120173 90120242 -29624656 + (TA)n Simple_repeat Simple_repeat 2 69 0 781 282 19 33 chr13 90120255 90120620 -29624278 + L1M4 LINE L1 2114 2473 -3673 3180 237 41 10 chr13 90120822 90121828 -29623070 - L1MB8 LINE L1 -13 6165 5127 24 32 0 0 chr13 90122241 90122272 -29622626 + AT_rich Low_complexity Low_complexity 1 31 0 206 173 13 67 chr13 90123621 90123696 -29621202 + T-rich Low_complexity Low_complexity 3 73 0 269 235 0 12 chr13 90123735 90123816 -29621082 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 189 0 0 0 chr13 90124000 90124021 -29620877 + (CA)n Simple_repeat Simple_repeat 2 22 0 1018 323 48 10 chr13 90124046 90124439 -29620459 + L1M4b LINE L1 683 1090 -5769 533 238 56 24 chr13 90124454 90124694 -29620204 + L1M4b LINE L1 1197 1438 -5417 230 302 116 39 chr13 90125064 90125193 -29619705 - LTR16A LTR ERVL -15 435 297 31 26 0 0 chr13 90125237 90125275 -29619623 + AT_rich Low_complexity Low_complexity 1 38 0 251 366 57 21 chr13 90126562 90126898 -29618000 + L1MD3 LINE L1 824 1171 -5967 1817 172 91 27 chr13 90126923 90127449 -29617449 + MLT2A2 LTR ERVL 1 554 0 603 290 78 72 chr13 90127832 90128500 -29616398 + L1MD3 LINE L1 1571 2251 -4887 2020 125 10 0 chr13 90128500 90128804 -29616094 + AluSc SINE Alu 3 309 0 603 290 78 72 chr13 90128804 90129308 -29615590 + L1MD3 LINE L1 2251 2750 -4388 22 80 0 0 chr13 90130011 90130061 -29614837 + AT_rich Low_complexity Low_complexity 1 50 0 27 62 0 0 chr13 90130141 90130189 -29614709 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr13 90130280 90130302 -29614596 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 90130357 90130386 -29614512 + AT_rich Low_complexity Low_complexity 1 29 0 357 335 51 13 chr13 90131779 90131937 -29612961 + MIR SINE MIR 13 176 -86 1366 174 129 0 chr13 90132748 90133012 -29611886 - MER1B DNA MER1_type -41 298 1 27 96 0 0 chr13 90134159 90134242 -29610656 + AT_rich Low_complexity Low_complexity 1 83 0 297 61 61 0 chr13 90134256 90134305 -29610593 - L1MA7 LINE L1 -2 6289 6238 378 172 26 60 chr13 90134314 90134430 -29610468 + L1MA7 LINE L1 6172 6283 -8 2956 211 88 43 chr13 90134457 90135341 -29609557 + MER52A LTR ERV1 1 999 -681 779 294 6 0 chr13 90135425 90135745 -29609153 + L1MD3 LINE L1 3673 3994 -2963 * 1186 259 139 58 chr13 90135738 90137474 -29607424 + L1MD3 LINE L1 4999 6859 -311 426 20 0 0 chr13 90137477 90137528 -29607370 + (TTG)n Simple_repeat Simple_repeat 1 51 0 1569 80 0 0 chr13 90137528 90137728 -29607170 - AluY SINE Alu -33 278 79 27 0 0 0 chr13 90138275 90138302 -29606596 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr13 90138535 90138563 -29606335 + AT_rich Low_complexity Low_complexity 1 28 0 763 279 92 71 chr13 90138607 90139505 -29605393 - L1ME3A LINE L1 0 6170 5254 237 33 0 0 chr13 90139505 90139535 -29605363 + (T)n Simple_repeat Simple_repeat 1 30 0 1220 169 25 0 chr13 90139945 90140182 -29604716 - L1MA3 LINE L1 0 6305 6063 566 319 102 52 chr13 90140387 90140958 -29603940 - L1ME3A LINE L1 -1594 4552 3954 254 203 16 0 chr13 90141074 90141138 -29603760 - L1MA4 LINE L1 -7 6293 6229 29 0 0 0 chr13 90141274 90141303 -29603595 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr13 90141351 90141388 -29603510 + AT_rich Low_complexity Low_complexity 1 37 0 29 47 0 0 chr13 90141500 90141543 -29603355 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 90141579 90141601 -29603297 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 90141791 90141815 -29603083 + AT_rich Low_complexity Low_complexity 1 24 0 475 284 58 82 chr13 90141926 90142390 -29602508 - L1ME3A LINE L1 -2978 3168 2716 842 371 94 25 chr13 90142783 90143936 -29600962 - L2 LINE L2 -1047 2267 1035 28 61 0 0 chr13 90145106 90145155 -29599743 + AT_rich Low_complexity Low_complexity 1 49 0 24 113 0 0 chr13 90145173 90145288 -29599610 + AT_rich Low_complexity Low_complexity 1 115 0 21 0 0 0 chr13 90145927 90145948 -29598950 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 90146157 90146193 -29598705 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr13 90147549 90147585 -29597313 + AT_rich Low_complexity Low_complexity 1 36 0 203 115 16 49 chr13 90147796 90147857 -29597041 + (TA)n Simple_repeat Simple_repeat 2 60 0 23 33 0 0 chr13 90147924 90147954 -29596944 + AT_rich Low_complexity Low_complexity 1 30 0 271 232 29 0 chr13 90148095 90148164 -29596734 + MLT1I LTR MaLR 66 136 -273 284 376 117 6 chr13 90148313 90148475 -29596423 + MLT1I LTR MaLR 152 331 -78 331 239 23 11 chr13 90148478 90148566 -29596332 - L1MC4 LINE L1 -1340 6702 6614 319 241 72 0 chr13 90148498 90148581 -29596317 + L1MC4 LINE L1 6614 6702 -1340 * 201 74 0 0 chr13 90148910 90148937 -29595961 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr13 90149718 90149740 -29595158 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 90150558 90150586 -29594312 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 90150898 90150926 -29593972 + AT_rich Low_complexity Low_complexity 1 28 0 1975 158 0 3 chr13 90150945 90151255 -29593643 - AluSx SINE Alu -3 309 1 23 33 0 0 chr13 90151527 90151557 -29593341 + AT_rich Low_complexity Low_complexity 1 30 0 238 220 99 73 chr13 90151813 90152004 -29592894 + L1ME2 LINE L1 5078 5273 -873 21 57 0 0 chr13 90152108 90152143 -29592755 + AT_rich Low_complexity Low_complexity 1 35 0 238 296 12 0 chr13 90152218 90152299 -29592599 + L1ME2 LINE L1 5494 5575 -599 5489 209 8 54 chr13 90152306 90153781 -29591117 + L1PB4 LINE L1 3893 5300 -846 5112 196 36 18 chr13 90153798 90159975 -29584923 + L1PA11 LINE L1 10 6488 -1 4587 130 28 59 chr13 90159973 90160282 -29584616 + L1PB4 LINE L1 5282 5599 -557 * 1934 84 3 77 chr13 90160282 90160603 -29584295 + AluSx SINE Alu 7 305 0 4587 130 28 59 chr13 90160603 90160727 -29584171 + L1PB4 LINE L1 5599 5725 -431 2277 52 0 0 chr13 90160727 90160996 -29583902 + AluY SINE Alu 37 305 -6 4587 130 28 59 chr13 90160996 90161455 -29583443 + L1PB4 LINE L1 5725 6148 -8 1143 256 68 53 chr13 90161775 90162317 -29582581 + L1ME2 LINE L1 5601 6150 -14 6205 163 45 7 chr13 90162805 90163990 -29580908 + Tigger3b DNA MER2_type 2 1231 0 319 186 0 0 chr13 90165039 90165098 -29579800 + MLT1G LTR MaLR 532 590 0 722 316 69 63 chr13 90165120 90165759 -29579139 - ERVL LTR ERVL -2989 2775 2133 723 273 0 12 chr13 90165933 90166105 -29578793 + MER63A DNA MER1_type 41 210 0 23 0 0 0 chr13 90166229 90166252 -29578646 + AT_rich Low_complexity Low_complexity 1 23 0 283 312 35 47 chr13 90167117 90167287 -29577611 - LTR16C LTR ERVL -13 478 311 561 258 73 17 chr13 90167543 90167721 -29577177 + MER5A DNA MER1_type 1 188 -1 482 334 104 41 chr13 90168234 90168841 -29576057 + L1ME3A LINE L1 4691 5335 -811 387 356 29 45 chr13 90168956 90169268 -29575630 - L2 LINE L2 -1 3312 3006 467 346 19 14 chr13 90169280 90169488 -29575410 - L2 LINE L2 -577 2737 2529 366 309 93 20 chr13 90169536 90169740 -29575158 - L2 LINE L2 -1071 2243 2025 3101 141 12 4 chr13 90169760 90170251 -29574647 + LOR1a LTR ERV1 1 495 -2 1546 202 18 3 chr13 90170253 90170535 -29574363 + LOR1a-int LTR ERV1 4 289 -7831 248 324 132 27 chr13 90170597 90171166 -29573732 + L1ME3A LINE L1 5369 6002 -168 571 188 23 23 chr13 90171166 90171299 -29573599 + L1PA16 LINE L1 6033 6165 -1 248 324 132 27 chr13 90171299 90171313 -29573585 + L1ME3A LINE L1 6002 6013 -157 314 289 130 78 chr13 90171357 90171679 -29573219 - L2 LINE L2 -2120 1194 856 1592 286 73 23 chr13 90173136 90173780 -29571118 - ERVL LTR ERVL -1281 4483 3808 492 338 18 44 chr13 90173996 90174430 -29570468 - ERVL LTR ERVL -2244 3520 3029 2035 90 27 36 chr13 90174483 90174784 -29570114 + AluSg1 SINE Alu 2 299 -10 211 253 13 13 chr13 90175147 90175222 -29569676 + (TA)n Simple_repeat Simple_repeat 1 75 0 218 384 132 24 chr13 90175443 90175839 -29569059 + L2 LINE L2 2090 2441 -873 2073 119 0 14 chr13 90175839 90176156 -29568742 - AluSx SINE Alu 0 312 1 218 384 132 24 chr13 90176156 90176439 -29568459 + L2 LINE L2 2441 2843 -471 561 114 8 73 chr13 90176443 90176566 -29568332 - L1PA13 LINE L1 0 6163 6049 269 298 9 18 chr13 90177286 90177400 -29567498 + (TATATG)n Simple_repeat Simple_repeat 3 115 0 27 29 0 0 chr13 90177633 90177667 -29567231 + AT_rich Low_complexity Low_complexity 1 34 0 1906 62 4 0 chr13 90177830 90178086 -29566812 - L1PA14 LINE L1 -3 6158 5902 22 35 0 0 chr13 90178802 90178831 -29566067 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 90178918 90178947 -29565951 + AT_rich Low_complexity Low_complexity 1 29 0 349 385 44 32 chr13 90179073 90179416 -29565482 - L2 LINE L2 -50 3263 2917 2182 148 36 24 chr13 90179732 90180151 -29564747 + L1PA16 LINE L1 5742 6165 -1 1781 141 37 10 chr13 90180162 90180461 -29564437 + AluSg SINE Alu 1 307 -3 193 333 138 29 chr13 90180465 90180675 -29564223 - L2 LINE L2 -778 2536 2304 * 354 345 87 4 chr13 90180670 90180899 -29563999 + L2 LINE L2 3066 3313 0 343 167 36 0 chr13 90180899 90181037 -29563861 + (TA)n Simple_repeat Simple_repeat 1 143 0 2097 118 0 7 chr13 90181039 90181336 -29563562 - AluSq SINE Alu -18 295 1 380 352 83 35 chr13 90181355 90181593 -29563305 - L2 LINE L2 -1016 2298 2073 336 119 0 0 chr13 90181593 90181652 -29563246 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 380 352 83 35 chr13 90181652 90181873 -29563025 - L2 LINE L2 -1241 2073 1817 521 209 0 0 chr13 90182386 90182496 -29562402 + L1PB3 LINE L1 6038 6147 -7 188 67 33 0 chr13 90182500 90182530 -29562368 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 25 65 0 0 chr13 90182851 90182897 -29562001 + AT_rich Low_complexity Low_complexity 1 46 0 489 314 46 54 chr13 90183758 90183788 -29561110 + L1ME LINE L1 613 642 -5463 2890 3 0 0 chr13 90183788 90184103 -29560795 + AluYb8 SINE Alu 1 315 -3 489 314 46 54 chr13 90184103 90184469 -29560429 + L1ME LINE L1 642 1042 -5063 261 276 111 33 chr13 90184495 90184738 -29560160 + L1ME LINE L1 1055 1316 -4764 459 279 47 17 chr13 90184930 90185102 -29559796 + MIR SINE MIR 39 215 -47 412 327 6 6 chr13 90185281 90185437 -29559461 + MIR SINE MIR 48 203 -59 283 285 55 40 chr13 90185541 90185741 -29559157 - L1ME LINE L1 -461 5660 5458 226 286 16 16 chr13 90186232 90186295 -29558603 - L3 LINE CR1 -33 1544 1482 205 361 0 12 chr13 90186327 90186410 -29558488 - L3 LINE CR1 -184 1393 1312 246 42 62 0 chr13 90186778 90186826 -29558072 + (TA)n Simple_repeat Simple_repeat 1 51 0 507 60 0 0 chr13 90189681 90189748 -29555150 + (TC)n Simple_repeat Simple_repeat 1 67 0 2148 265 112 31 chr13 90189959 90191249 -29553649 + L1MDa LINE L1 1255 2648 -3892 1971 118 11 0 chr13 90191666 90191963 -29552935 - AluSp SINE Alu 0 300 1 1927 133 3 0 chr13 90191986 90192271 -29552627 - AluSx SINE Alu -26 286 1 272 291 155 0 chr13 90192374 90192477 -29552421 - L2 LINE L2 -8 3305 3187 23 0 0 0 chr13 90192599 90192622 -29552276 + AT_rich Low_complexity Low_complexity 1 23 0 1410 300 71 14 chr13 90194380 90194900 -29549998 - HERV16 LTR ERVL -2752 2244 1695 473 379 44 7 chr13 90194932 90195204 -29549694 - HERV16 LTR ERVL -3449 1547 1266 836 325 70 41 chr13 90195923 90196169 -29548729 - LTR16B LTR ERVL -4 460 223 4251 183 15 50 chr13 90196169 90196263 -29548635 + MER49 LTR ERV1 1 97 -826 2293 56 29 20 chr13 90196263 90196569 -29548329 + AluY SINE Alu 1 309 -2 4251 183 15 50 chr13 90196569 90197101 -29547797 + MER49 LTR ERV1 97 584 -339 1897 107 7 20 chr13 90197101 90197399 -29547499 + AluSx SINE Alu 1 294 -18 4251 183 15 50 chr13 90197399 90197728 -29547170 + MER49 LTR ERV1 584 923 0 836 325 70 41 chr13 90197728 90197921 -29546977 - LTR16B LTR ERVL -241 223 8 420 259 121 9 chr13 90197943 90198059 -29546839 + MER45A DNA AcHobo 8 136 -42 24 0 0 0 chr13 90200051 90200075 -29544823 + AT_rich Low_complexity Low_complexity 1 24 0 200 246 0 116 chr13 90200770 90200839 -29544059 + MIR SINE MIR 194 254 -8 2459 219 53 17 chr13 90201070 90201674 -29543224 - MER50 LTR ERV1 0 734 109 768 182 25 25 chr13 90201682 90201841 -29543057 - MER50 LTR ERV1 -566 168 10 2474 162 14 0 chr13 90201854 90202268 -29542630 - MSTA LTR MaLR 0 428 9 892 127 8 0 chr13 90203499 90203633 -29541265 + L1PA7 LINE L1 1 135 -6326 21106 89 12 16 chr13 90203636 90207609 -29537289 + L1PA7 LINE L1 2514 6467 -2 201 94 0 0 chr13 90207701 90207733 -29537165 + (TC)n Simple_repeat Simple_repeat 2 33 0 226 268 0 0 chr13 90208330 90208401 -29536497 + L1MC4 LINE L1 6640 6710 -1332 802 239 6 6 chr13 90208498 90208665 -29536233 + FAM SINE Alu 2 168 -7 2119 194 43 2 chr13 90208782 90209225 -29535673 - LOR1b LTR ERV1 0 461 1 1932 146 7 0 chr13 90209943 90210244 -29534654 - AluSx SINE Alu -9 303 1 1713 171 34 28 chr13 90210466 90210633 -29534265 + MER46B DNA MER2_type 3 50 -2681 2135 96 7 0 chr13 90210633 90210913 -29533985 + AluSp SINE Alu 17 298 -15 1713 171 34 28 chr13 90210913 90211102 -29533796 + MER46B DNA MER2_type 50 236 0 204 97 0 0 chr13 90211351 90211382 -29533516 + (CA)n Simple_repeat Simple_repeat 2 32 0 2401 68 0 0 chr13 90211519 90211813 -29533085 + AluY SINE Alu 1 294 -17 234 136 0 0 chr13 90212034 90212078 -29532820 + (TC)n Simple_repeat Simple_repeat 1 44 0 1742 113 34 132 chr13 90213067 90213483 -29531415 + THE1C LTR MaLR 1 375 0 1553 223 17 50 chr13 90213579 90213982 -29530916 + MLT1B LTR MaLR 1 390 0 1381 264 21 46 chr13 90214193 90214667 -29530231 - MLT1D LTR MaLR 0 505 44 263 276 106 32 chr13 90214852 90214975 -29529923 + L2 LINE L2 3138 3269 -44 23 0 0 0 chr13 90216542 90216565 -29528333 + AT_rich Low_complexity Low_complexity 1 23 0 670 372 104 40 chr13 90218950 90220031 -29524867 - L2 LINE L2 -1 3312 2149 2188 84 24 3 chr13 90220783 90221080 -29523818 - AluSc SINE Alu -6 303 1 29 0 0 0 chr13 90222002 90222031 -29522867 + AT_rich Low_complexity Low_complexity 1 29 0 532 295 14 7 chr13 90222439 90222578 -29522320 - MER63A DNA MER1_type 0 210 71 372 227 43 82 chr13 90222580 90222774 -29522124 - MER8 DNA MER2_type 0 239 1 1341 143 40 13 chr13 90222883 90223107 -29521791 - MER30 DNA MER1_type 0 230 1 1860 48 0 0 chr13 90223500 90223730 -29521168 - L1PA5 LINE L1 -3 6151 5922 216 204 0 0 chr13 90223843 90223887 -29521011 + A-rich Low_complexity Low_complexity 98 141 0 31 0 0 0 chr13 90224048 90224079 -29520819 + AT_rich Low_complexity Low_complexity 1 31 0 1241 222 28 7 chr13 90224083 90224367 -29520531 - AluJo SINE Alu -18 294 5 1397 197 74 15 chr13 90224455 90224780 -29520118 + MER2 DNA MER2_type 1 344 0 189 0 0 0 chr13 90224833 90224854 -29520044 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 681 197 158 11 chr13 90224858 90225041 -29519857 + L1MC4 LINE L1 7468 7677 -365 237 228 14 46 chr13 90225207 90225300 -29519598 - MLT1H LTR MaLR -281 128 59 377 390 10 5 chr13 90225862 90226057 -29518841 + MIR SINE MIR 31 226 -36 28 0 0 0 chr13 90226099 90226127 -29518771 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 90226849 90226876 -29518022 + AT_rich Low_complexity Low_complexity 1 27 0 280 240 155 16 chr13 90227925 90228054 -29516844 - MIR SINE MIR -39 223 77 466 15 45 0 chr13 90228072 90228138 -29516760 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1024 179 29 0 chr13 90228197 90228404 -29516494 + L1MA7 LINE L1 6054 6266 -25 652 33 22 0 chr13 90228536 90228627 -29516271 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 24 53 0 0 chr13 90229125 90229163 -29515735 + AT_rich Low_complexity Low_complexity 1 38 0 394 323 94 0 chr13 90229294 90229486 -29515412 - MER69 DNA AcHobo -2316 210 1 282 29 0 0 chr13 90229492 90229549 -29515349 + (CA)n Simple_repeat Simple_repeat 1 92 0 282 29 0 0 chr13 90229549 90229584 -29515314 + (CA)n Simple_repeat Simple_repeat 2 36 0 35 0 0 0 chr13 90229633 90229668 -29515230 + AT_rich Low_complexity Low_complexity 1 35 0 864 118 0 0 chr13 90230376 90230512 -29514386 + (TTCTCC)n Simple_repeat Simple_repeat 3 138 0 1845 149 7 0 chr13 90230516 90230811 -29514087 - AluSx SINE Alu -15 297 1 216 200 0 0 chr13 90231279 90231319 -29513579 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 40 67 0 0 chr13 90231446 90231521 -29513377 + AT_rich Low_complexity Low_complexity 1 75 0 794 240 17 6 chr13 90232082 90232257 -29512641 - MLT1D LTR MaLR 0 505 329 2115 82 0 4 chr13 90232460 90232780 -29512118 + AluY SINE Alu 1 319 0 366 23 0 0 chr13 90232914 90232957 -29511941 + (CA)n Simple_repeat Simple_repeat 2 44 0 384 173 11 65 chr13 90234324 90234509 -29510389 + (TA)n Simple_repeat Simple_repeat 1 175 0 258 175 0 120 chr13 90234448 90234648 -29510250 + (CATA)n Simple_repeat Simple_repeat 2 177 0 * 350 153 32 85 chr13 90234655 90234925 -29509973 + (CATATA)n Simple_repeat Simple_repeat 1 255 0 307 216 5 54 chr13 90235000 90235185 -29509713 + (TA)n Simple_repeat Simple_repeat 1 176 0 21 0 0 0 chr13 90235716 90235737 -29509161 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 90238517 90238544 -29506354 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr13 90238705 90238726 -29506172 + AT_rich Low_complexity Low_complexity 1 21 0 3431 181 98 157 chr13 90239084 90240950 -29503948 - MER52A LTR ERV1 0 1755 1 298 244 11 33 chr13 90241067 90241157 -29503741 + HAL1 LINE L1 1451 1538 -969 598 263 83 36 chr13 90241767 90242045 -29502853 + L1 LINE L1 5041 5331 -815 1382 130 13 42 chr13 90242046 90242172 -29502726 + L1MA3 LINE L1 5731 5859 -446 1382 140 4 0 chr13 90242172 90242400 -29502498 + L1MA3 LINE L1 6075 6303 -2 1382 130 13 42 chr13 90242400 90242428 -29502470 + L1MA3 LINE L1 5859 6303 -2 1264 164 34 15 chr13 90242418 90242681 -29502217 + L1P5 LINE L1 5314 5581 -575 * 624 279 23 46 chr13 90243138 90243357 -29501541 + MER20 DNA MER1_type 1 214 -5 796 260 17 0 chr13 90243376 90243549 -29501349 - Tigger7 DNA MER2_type -528 177 2 2147 266 96 63 chr13 90243549 90245146 -29499752 - L1MDa LINE L1 -4648 1892 25 300 167 52 21 chr13 90246177 90246273 -29498625 + (TA)n Simple_repeat Simple_repeat 1 99 0 285 29 0 0 chr13 90246542 90246576 -29498322 + (TA)n Simple_repeat Simple_repeat 2 35 0 2475 58 0 0 chr13 90246779 90247087 -29497811 - AluY SINE Alu -3 308 1 27 0 0 0 chr13 90247541 90247568 -29497330 + AT_rich Low_complexity Low_complexity 1 27 0 21 89 0 0 chr13 90247587 90247643 -29497255 + AT_rich Low_complexity Low_complexity 1 56 0 34 0 0 0 chr13 90248262 90248296 -29496602 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr13 90248310 90248355 -29496543 + AT_rich Low_complexity Low_complexity 1 45 0 1212 201 50 20 chr13 90248938 90249241 -29495657 - AluJb SINE Alu 0 312 1 511 299 123 62 chr13 90249480 90250193 -29494705 + LTR41 LTR ERVL 1 757 -16 309 366 46 29 chr13 90251097 90251272 -29493626 - MIR SINE MIR -75 187 12 955 306 26 0 chr13 90251787 90252094 -29492804 - LTR16A LTR ERVL -2 448 134 25 90 0 0 chr13 90252936 90253003 -29491895 + AT_rich Low_complexity Low_complexity 1 67 0 2626 249 12 12 chr13 90253657 90254305 -29490593 + MER82 DNA MER2_type 1 648 -5 3003 156 3 100 chr13 90255562 90256229 -29488669 + LTR26 LTR ERV1 1 602 -1 238 153 119 0 chr13 90256587 90256646 -29488252 + L1MC4 LINE L1 6658 6723 -1319 1105 227 40 20 chr13 90257430 90257734 -29487164 - L1MA10 LINE L1 -3 6331 6022 211 302 0 0 chr13 90257789 90257842 -29487056 + MIR SINE MIR 203 255 -7 276 30 0 0 chr13 90258962 90258995 -29485903 + (TAA)n Simple_repeat Simple_repeat 2 34 0 24 67 0 0 chr13 90261537 90261582 -29483316 + AT_rich Low_complexity Low_complexity 1 45 0 350 276 83 16 chr13 90261627 90261818 -29483080 + L1ME LINE L1 5573 5776 -389 285 94 38 0 chr13 90261948 90262001 -29482897 - AluJ/FLAM SINE Alu -216 86 32 2115 215 43 30 chr13 90262538 90262572 -29482326 + MER50 LTR ERV1 1 33 -701 2105 124 51 28 chr13 90262572 90262928 -29481970 + THE1B LTR MaLR 1 364 0 2115 215 43 30 chr13 90262928 90263427 -29481471 + MER50 LTR ERV1 33 541 -193 1939 117 53 0 chr13 90265267 90265550 -29479348 + AluSp SINE Alu 1 298 -15 915 295 55 30 chr13 90265597 90266068 -29478830 + L1MC4a LINE L1 5483 5965 -1843 450 194 213 0 chr13 90266140 90266300 -29478598 - L1MA7 LINE L1 -14 6277 6084 3601 183 25 4 chr13 90268021 90268732 -29476166 - L1 LINE L1 -1937 4209 3484 3738 177 26 50 chr13 90268738 90269578 -29475320 + LTR1B LTR ERV1 7 826 0 3806 206 33 52 chr13 90269579 90269719 -29475179 - L1 LINE L1 -2660 3486 3345 2048 136 7 0 chr13 90269719 90270013 -29474885 + AluSq SINE Alu 1 296 -17 3806 206 33 52 chr13 90270013 90270990 -29473908 - L1 LINE L1 -2801 3345 2390 4730 188 32 16 chr13 90270993 90272456 -29472442 + L1MA4 LINE L1 4807 6291 -9 29 60 0 0 chr13 90272458 90272508 -29472390 + AT_rich Low_complexity Low_complexity 1 50 0 27 103 0 0 chr13 90272599 90272696 -29472202 + AT_rich Low_complexity Low_complexity 1 97 0 264 157 0 0 chr13 90272722 90272773 -29472125 + L1MA4A LINE L1 6251 6301 -2 1532 177 45 24 chr13 90273069 90273402 -29471496 - L1MA8 LINE L1 -177 6114 5775 817 196 16 0 chr13 90273402 90273574 -29471324 + L1MA8 LINE L1 6100 6286 -5 378 301 23 58 chr13 90274766 90274939 -29469959 - MIR SINE MIR 0 262 96 409 206 0 0 chr13 90275187 90275260 -29469638 - AluSg/x SINE Alu -32 278 206 768 352 29 0 chr13 90275527 90275936 -29468962 - L1MC/D LINE L1 -2039 5769 5349 431 286 8 0 chr13 90276409 90276528 -29468370 - MIR SINE MIR -26 236 117 22 35 0 0 chr13 90276743 90276772 -29468126 + AT_rich Low_complexity Low_complexity 1 29 0 481 225 179 0 chr13 90278095 90278246 -29466652 - MER46C DNA MER2_type -146 192 15 1337 110 0 20 chr13 90279254 90279454 -29465444 + AluSg/x SINE Alu 117 312 0 186 280 67 40 chr13 90279500 90279575 -29465323 + MIR SINE MIR 180 256 -6 784 286 52 0 chr13 90279679 90279889 -29465009 + MIR SINE MIR 1 221 -41 2052 123 0 0 chr13 90279982 90280274 -29464624 - AluSx SINE Alu -20 292 1 212 253 189 21 chr13 90280649 90280744 -29464154 + MIR SINE MIR 36 146 -62 348 320 70 0 chr13 90280755 90280855 -29464043 - L2 LINE L2 -18 3254 3148 1533 161 99 0 chr13 90281422 90281695 -29463203 + AluJo SINE Alu 4 303 -9 244 276 138 0 chr13 90281876 90281963 -29462935 - MER117 DNA MER1_type -98 99 1 2186 104 0 13 chr13 90281984 90282293 -29462605 + AluSx SINE Alu 1 305 -7 1969 143 3 9 chr13 90282299 90282614 -29462284 + AluSq SINE Alu 1 313 0 2176 69 7 23 chr13 90283570 90283873 -29461025 + AluY SINE Alu 1 298 -13 2480 65 7 0 chr13 90283916 90284225 -29460673 + AluSx SINE Alu 1 311 -1 2005 125 3 3 chr13 90284230 90284518 -29460380 + AluSx SINE Alu 1 288 -24 1806 128 4 0 chr13 90284790 90285047 -29459851 + AluSq SINE Alu 50 307 -6 273 171 24 61 chr13 90285277 90285359 -29459539 - HERVE LTR ERV1 -4641 3785 3707 1601 286 39 2 chr13 90285364 90285770 -29459128 - HERVE LTR ERV1 -5957 2469 2049 1726 228 60 6 chr13 90285894 90286241 -29458657 - HERVE LTR ERV1 -6339 2087 1722 1803 118 115 80 chr13 90286241 90286614 -29458284 - HERVE LTR ERV1 -3482 4331 3946 * 3877 221 25 4 chr13 90286597 90287342 -29457556 - HERVE LTR ERV1 -6934 1492 732 385 235 88 38 chr13 90287364 90287601 -29457297 - HERVE LTR ERV1 -6288 608 343 809 121 6 182 chr13 90287751 90288053 -29456845 - Tigger2a DNA MER2_type -190 254 1 1808 183 45 51 chr13 90288053 90288184 -29456714 - L1M4 LINE L1 -3155 2991 2861 2261 45 55 3 chr13 90288184 90288475 -29456423 + AluY SINE Alu 1 306 -5 1808 183 45 51 chr13 90288475 90288836 -29456062 - L1M4 LINE L1 -3285 2861 2502 328 158 0 0 chr13 90288838 90288895 -29456003 - FLAM_A SINE Alu 0 133 77 1610 100 0 0 chr13 90288895 90289105 -29455793 - AluSg SINE Alu -100 210 1 236 354 0 0 chr13 90289330 90289395 -29455503 + LTR67 LTR ERVL 132 196 -361 418 301 29 7 chr13 90289410 90289546 -29455352 + MLT1J2 LTR MaLR 1 139 -311 1512 195 22 4 chr13 90289546 90289855 -29455043 + AluJo SINE Alu 1 314 0 982 188 0 12 chr13 90289855 90290025 -29454873 + AluJo/FRAM SINE Alu 134 301 -11 2468 44 0 10 chr13 90291472 90291768 -29453130 - AluSg SINE Alu -17 293 1 330 159 48 0 chr13 90292071 90292134 -29452764 + MER50 LTR ERV1 1 66 -668 207 0 0 0 chr13 90293846 90293869 -29451029 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2037 121 6 6 chr13 90294376 90294689 -29450209 + AluSq SINE Alu 1 313 0 677 275 72 3 chr13 90294902 90295222 -29449676 - L1M4 LINE L1 -3050 3096 2755 197 313 77 51 chr13 90295234 90295319 -29449579 + L2 LINE L2 3112 3193 -120 1308 200 19 78 chr13 90295319 90295689 -29449209 - MER7A DNA MER2_type 0 346 1 197 313 77 51 chr13 90295689 90295798 -29449100 + L2 LINE L2 3193 3311 -2 21 0 0 0 chr13 90296486 90296507 -29448391 + AT_rich Low_complexity Low_complexity 1 21 0 297 237 92 13 chr13 90296641 90296793 -29448105 - L1MEc LINE L1 -2896 3250 3087 22 70 0 0 chr13 90296838 90296881 -29448017 + AT_rich Low_complexity Low_complexity 1 43 0 377 292 73 21 chr13 90297229 90297421 -29447477 - L1MEc LINE L1 -3555 2591 2390 219 211 18 18 chr13 90298288 90298345 -29446553 + GA-rich Low_complexity Low_complexity 4 60 0 1890 157 0 3 chr13 90298375 90298662 -29446236 + AluSx SINE Alu 1 286 -26 261 197 0 0 chr13 90298882 90298948 -29445950 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 2330 131 7 18 chr13 90298949 90299539 -29445359 + MER4A LTR ERV1 5 655 -9 246 176 0 0 chr13 90299545 90299596 -29445302 - LTR66 LTR ERVL -171 439 389 22 56 0 0 chr13 90299725 90299761 -29445137 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr13 90300033 90300068 -29444830 + AT_rich Low_complexity Low_complexity 1 35 0 289 294 19 0 chr13 90300548 90300669 -29444229 - L1MEc LINE L1 -3742 2445 2283 450 53 0 0 chr13 90300720 90300777 -29444121 + (TA)n Simple_repeat Simple_repeat 1 57 0 206 384 40 0 chr13 90301277 90301402 -29443496 - L2 LINE L2 0 3313 3184 438 377 30 35 chr13 90301672 90302038 -29442860 - L2 LINE L2 -464 2850 2487 1988 122 0 17 chr13 90302609 90302921 -29441977 + AluSx SINE Alu 1 307 0 1033 292 46 58 chr13 90303335 90303838 -29441060 + MLT1H1 LTR MaLR 59 555 0 291 336 23 23 chr13 90303926 90304054 -29440844 + L2 LINE L2 1063 1190 -2124 275 143 0 18 chr13 90304923 90304979 -29439919 + (TA)n Simple_repeat Simple_repeat 1 55 0 273 57 0 0 chr13 90305376 90305411 -29439487 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 204 114 0 chr13 90306366 90306454 -29438444 - MER103 DNA DNA -68 98 1 221 333 143 42 chr13 90306493 90306661 -29438237 - L2 LINE L2 -513 2801 2617 191 362 14 0 chr13 90306661 90306730 -29438168 + MIR3 SINE MIR 133 202 -6 24 77 0 0 chr13 90307494 90307546 -29437352 + AT_rich Low_complexity Low_complexity 1 52 0 601 243 180 19 chr13 90307630 90307836 -29437062 - MIR SINE MIR -11 251 13 413 19 19 0 chr13 90308641 90308695 -29436203 + (TG)n Simple_repeat Simple_repeat 2 56 0 195 235 0 0 chr13 90309227 90309278 -29435620 + GA-rich Low_complexity Low_complexity 2 52 0 22 35 0 0 chr13 90311677 90311706 -29433192 + AT_rich Low_complexity Low_complexity 1 29 0 27 87 0 0 chr13 90312152 90312221 -29432677 + AT_rich Low_complexity Low_complexity 1 69 0 255 302 143 32 chr13 90313477 90313603 -29431295 + MIR SINE MIR 2 141 -121 28 0 0 0 chr13 90313836 90313864 -29431034 + AT_rich Low_complexity Low_complexity 1 28 0 231 365 110 28 chr13 90314065 90314210 -29430688 + L2 LINE L2 3116 3272 0 1032 189 25 15 chr13 90314905 90315101 -29429797 - MLT1A1 LTR MaLR 0 365 168 1780 134 43 0 chr13 90315320 90315596 -29429302 + AluSx SINE Alu 1 288 -24 183 156 0 0 chr13 90316896 90316928 -29427970 + (TA)n Simple_repeat Simple_repeat 2 33 0 328 319 147 12 chr13 90317008 90317171 -29427727 + MIR SINE MIR 21 205 -57 667 247 55 33 chr13 90317605 90317876 -29427022 + L1M4 LINE L1 3298 3574 -2572 1943 234 73 102 chr13 90318188 90319148 -29425750 + MER69B DNA AcHobo 295 1226 0 814 209 39 6 chr13 90319808 90319990 -29424908 + MER5A DNA MER1_type 1 188 -1 2117 115 10 0 chr13 90320071 90320366 -29424532 - AluSx SINE Alu -14 298 1 963 192 34 26 chr13 90320654 90320888 -29424010 + L1PA14 LINE L1 5925 6160 -1 * 4691 261 36 48 chr13 90320883 90322571 -29422327 - L1M4 LINE L1 -979 5167 3509 186 43 0 0 chr13 90322571 90322594 -29422304 + (TG)n Simple_repeat Simple_repeat 2 24 0 4691 261 36 48 chr13 90322594 90323070 -29421828 - L1M4 LINE L1 -2637 3509 3029 1339 59 0 0 chr13 90323225 90323394 -29421504 - MLT2A1 LTR ERVL -275 169 1 5613 84 16 5 chr13 90323398 90324173 -29420725 - HERVL-A1 LTR ERVL -4 5650 4868 1276 276 67 20 chr13 90324192 90324598 -29420300 + MER74B LTR ERVL 124 548 -74 265 229 29 14 chr13 90324537 90324607 -29420291 - MER88 LTR ERVL -312 152 82 * 26 0 0 0 chr13 90325000 90325026 -29419872 + AT_rich Low_complexity Low_complexity 1 26 0 31 0 0 0 chr13 90325227 90325258 -29419640 + AT_rich Low_complexity Low_complexity 1 31 0 1665 163 76 25 chr13 90325389 90325744 -29419154 + THE1C LTR MaLR 3 375 0 762 220 120 10 chr13 90325806 90326006 -29418892 + AluJo SINE Alu 84 305 -7 32 0 0 0 chr13 90326026 90326058 -29418840 + AT_rich Low_complexity Low_complexity 1 32 0 24 77 0 0 chr13 90326216 90326268 -29418630 + AT_rich Low_complexity Low_complexity 1 52 0 979 87 41 0 chr13 90327354 90327526 -29417372 + CT-rich Low_complexity Low_complexity 1 179 0 1314 208 42 11 chr13 90327532 90327675 -29417223 - AluJb SINE Alu -39 273 117 249 33 0 0 chr13 90327675 90327705 -29417193 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1314 208 42 11 chr13 90327705 90327826 -29417072 - AluJb SINE Alu -195 117 1 2635 167 21 2 chr13 90327826 90328294 -29416604 - L1PA16 LINE L1 -128 6038 5562 25 0 0 0 chr13 90328509 90328534 -29416364 + AT_rich Low_complexity Low_complexity 1 25 0 755 285 100 9 chr13 90328539 90328960 -29415938 + L1MC1 LINE L1 2372 2830 -3316 4786 238 35 34 chr13 90328972 90329243 -29415655 + L1MC1 LINE L1 3003 3272 -3061 2181 126 7 0 chr13 90329243 90329553 -29415345 + AluSx SINE Alu 1 312 0 4786 238 35 34 chr13 90329553 90331907 -29412991 + L1MC1 LINE L1 3272 6328 -5 236 319 164 10 chr13 90332015 90332222 -29412676 + MIR SINE MIR 12 250 -12 344 344 79 66 chr13 90333318 90333890 -29411008 - L2 LINE L2 -1458 1856 1278 517 97 0 0 chr13 90336038 90336110 -29408788 - L1 LINE L1 -2073 4073 4002 * 829 213 44 24 chr13 90336104 90336353 -29408545 + L1 LINE L1 4089 4342 -1804 665 123 0 19 chr13 90337503 90337609 -29407289 - THE1A LTR MaLR -251 104 1 8056 126 2 16 chr13 90337609 90338809 -29406089 - THE1A-int LTR MaLR 0 1580 397 1395 129 9 132 chr13 90338811 90339136 -29405762 + LTR12 LTR ERV1 1 285 -429 336 244 11 0 chr13 90339137 90339227 -29405671 + LTR30 LTR ERV1 553 643 -79 666 177 16 22 chr13 90339227 90339374 -29405524 + LTR12 LTR ERV1 301 584 -130 * 5691 143 7 31 chr13 90339348 90340309 -29404589 + HERV9 LTR ERV1 54 991 -7408 16169 97 19 10 chr13 90340316 90342607 -29402291 + HERV9 LTR ERV1 1164 3475 -4924 305 98 0 0 chr13 90342625 90342666 -29402232 + MADE1 DNA Mariner 1 41 -39 395 276 89 95 chr13 90343102 90343582 -29401316 + L1MC4 LINE L1 6625 7092 -869 209 81 0 27 chr13 90343582 90343619 -29401279 + (TA)n Simple_repeat Simple_repeat 2 37 0 395 276 89 95 chr13 90343619 90343700 -29401198 + L1MC4 LINE L1 7092 7172 -789 215 277 29 88 chr13 90344069 90344206 -29400692 + L2 LINE L2 3170 3298 -15 21 0 0 0 chr13 90344855 90344876 -29400022 + AT_rich Low_complexity Low_complexity 1 21 0 229 213 38 88 chr13 90345425 90345505 -29399393 + MIR SINE MIR 14 89 -173 256 250 0 0 chr13 90346510 90346562 -29398336 + L2 LINE L2 3258 3309 -4 29 84 0 0 chr13 90346778 90346849 -29398049 + AT_rich Low_complexity Low_complexity 1 71 0 2067 162 12 40 chr13 90346889 90347128 -29397770 + MLT1B LTR MaLR 1 226 -164 1915 140 49 3 chr13 90347128 90347456 -29397442 - MER61A LTR ERV1 0 343 1 2067 162 12 40 chr13 90347456 90347617 -29397281 + MLT1B LTR MaLR 226 390 0 229 231 44 88 chr13 90347789 90347880 -29397018 + L2 LINE L2 3179 3265 -7 1483 162 79 11 chr13 90348401 90348666 -29396232 + AluJb SINE Alu 1 287 -25 318 106 0 0 chr13 90348666 90348713 -29396185 + (TA)n Simple_repeat Simple_repeat 1 47 0 1483 162 79 11 chr13 90348713 90348725 -29396173 + AluJb SINE Alu 287 297 -15 1499 203 19 32 chr13 90349712 90350028 -29394870 - AluJb SINE Alu 0 312 1 497 273 80 69 chr13 90350322 90350597 -29394301 + LTR16A LTR ERVL 162 439 -11 1323 198 81 62 chr13 90352361 90352441 -29392457 + MSTD LTR MaLR 17 94 -302 1998 145 0 25 chr13 90352441 90352758 -29392140 + AluSq SINE Alu 1 309 -4 1323 198 81 62 chr13 90352758 90353046 -29391852 + MSTD LTR MaLR 94 392 -4 768 266 15 28 chr13 90353050 90353483 -29391415 + MSTD-int LTR MaLR 2 544 -1191 2464 214 83 5 chr13 90353496 90354108 -29390790 - MER52A LTR ERV1 -800 955 239 24 0 0 0 chr13 90355304 90355328 -29389570 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 90355373 90355394 -29389504 + AT_rich Low_complexity Low_complexity 1 21 0 1178 207 10 82 chr13 90355427 90355732 -29389166 - MLT1B LTR MaLR 0 390 108 2223 227 30 8 chr13 90355752 90356670 -29388228 + L1M3 LINE L1 4753 5693 -490 26 30 0 0 chr13 90356945 90356978 -29387920 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 90357184 90357206 -29387692 + AT_rich Low_complexity Low_complexity 1 22 0 1371 210 129 9 chr13 90357330 90357678 -29387220 - MLT1B LTR MaLR 0 390 1 315 0 0 0 chr13 90358024 90358059 -29386839 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 50 0 0 chr13 90358459 90358499 -29386399 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 90359252 90359273 -29385625 + AT_rich Low_complexity Low_complexity 1 21 0 272 270 40 53 chr13 90359483 90359635 -29385263 + MLT1L LTR MaLR 127 276 -339 1414 272 94 16 chr13 90359926 90360826 -29384072 - L1ME2 LINE L1 -294 5870 4902 15385 29 9 0 chr13 90360832 90363445 -29381453 - L1PA2 LINE L1 0 6155 3526 258 139 0 0 chr13 90363451 90363494 -29381404 - L1M2 LINE L1 -470 5821 5779 3756 50 4 2 chr13 90363657 90364132 -29380766 - L1HS LINE L1 -9 6146 5671 33 0 0 0 chr13 90364208 90364241 -29380657 + AT_rich Low_complexity Low_complexity 1 33 0 987 89 0 0 chr13 90364241 90364376 -29380522 - AluY SINE Alu -44 267 133 998 213 34 142 chr13 90364451 90364860 -29380038 + MLT1A1 LTR MaLR 1 365 0 231 292 142 21 chr13 90364877 90365117 -29379781 - L1ME2 LINE L1 -1394 4752 4484 222 91 0 0 chr13 90365198 90365231 -29379667 + (TATG)n Simple_repeat Simple_repeat 2 34 0 466 298 68 34 chr13 90365384 90365649 -29379249 + HAL1 LINE L1 1489 1762 -745 44 20 0 0 chr13 90365684 90365735 -29379163 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr13 90365939 90365961 -29378937 + AT_rich Low_complexity Low_complexity 1 22 0 2181 117 0 0 chr13 90367757 90368057 -29376841 - AluSg SINE Alu -10 300 1 285 300 83 57 chr13 90368059 90368409 -29376489 - L1ME3A LINE L1 -5 6165 5807 318 344 52 8 chr13 90368474 90368843 -29376055 - L1ME3A LINE L1 -463 5707 5323 2623 91 95 0 chr13 90368853 90369262 -29375636 - LTR7 LTR ERV1 -2 448 1 2229 106 50 13 chr13 90369262 90369640 -29375258 - HERVH LTR ERV1 0 7713 7322 1263 156 18 9 chr13 90369638 90369863 -29375035 - HERVH LTR ERV1 -1894 5819 5593 * 21 57 0 0 chr13 90370529 90370564 -29374334 + AT_rich Low_complexity Low_complexity 1 35 0 2046 100 0 56 chr13 90370625 90370944 -29373954 + AluSc SINE Alu 1 301 -8 198 341 101 14 chr13 90373893 90374031 -29370867 - L3 LINE CR1 -10 1567 1418 291 161 129 0 chr13 90374201 90374263 -29370635 - MER116 DNA Mariner -5 75 6 243 200 0 0 chr13 90374276 90374316 -29370582 + Alu SINE Alu 128 167 -141 183 349 0 0 chr13 90374689 90374752 -29370146 + MIR3 SINE MIR 93 155 -53 931 18 0 0 chr13 90375935 90376045 -29368853 + L1PA2 LINE L1 6046 6155 0 2458 62 0 3 chr13 90376230 90376536 -29368362 + AluY SINE Alu 4 308 -3 746 266 102 22 chr13 90376666 90376940 -29367958 - MER46C DNA MER2_type -39 299 4 1031 148 0 0 chr13 90377241 90377396 -29367502 - AluSg/x SINE Alu -23 289 135 264 148 0 0 chr13 90377406 90377467 -29367431 + (TA)n Simple_repeat Simple_repeat 1 61 0 927 103 8 0 chr13 90377467 90377593 -29367305 - AluY SINE Alu -184 127 1 429 172 0 0 chr13 90378628 90378721 -29366177 + (TA)n Simple_repeat Simple_repeat 1 93 0 22 35 0 0 chr13 90378833 90378862 -29366036 + AT_rich Low_complexity Low_complexity 1 29 0 255 320 0 0 chr13 90379745 90379842 -29365056 - L1M4 LINE L1 -1329 4817 4721 746 228 33 5 chr13 90380901 90381085 -29363813 + MER5A DNA MER1_type 1 189 0 443 283 15 76 chr13 90381576 90381774 -29363124 - L2 LINE L2 -10 3303 3118 22 35 0 0 chr13 90381985 90382014 -29362884 + AT_rich Low_complexity Low_complexity 1 29 0 2325 110 0 0 chr13 90383583 90383893 -29361005 + AluSg SINE Alu 1 310 0 26 30 0 0 chr13 90384515 90384548 -29360350 + AT_rich Low_complexity Low_complexity 1 33 0 570 313 40 36 chr13 90385015 90385469 -29359429 - L1MC4a LINE L1 -313 5808 5665 755 255 134 39 chr13 90388298 90388738 -29356160 - MLT1D LTR MaLR 0 467 1 265 292 58 58 chr13 90389289 90389426 -29355472 - L3b LINE CR1 -170 1413 1277 516 110 0 0 chr13 90389579 90389652 -29355246 - Alu SINE Alu -16 293 221 2187 92 0 0 chr13 90389662 90389933 -29354965 - AluSx SINE Alu -25 287 17 2333 51 3 45 chr13 90390159 90390470 -29354428 - AluY SINE Alu -13 298 1 1850 184 25 8 chr13 90392092 90392451 -29352447 - MLT1A1 LTR MaLR 0 365 1 438 232 107 18 chr13 90392598 90392710 -29352188 - L2 LINE L2 -1 3312 3191 1699 178 17 0 chr13 90393502 90393795 -29351103 + AluJb SINE Alu 2 299 -13 499 292 24 43 chr13 90395616 90395825 -29349073 + MIR SINE MIR 33 237 -25 785 193 25 0 chr13 90396238 90396399 -29348499 - L1PA16 LINE L1 -2 6164 6000 22 0 0 0 chr13 90396564 90396586 -29348312 + AT_rich Low_complexity Low_complexity 1 22 0 271 294 128 0 chr13 90397100 90397209 -29347689 + MLT1J2 LTR MaLR 42 164 -286 3551 212 44 10 chr13 90399605 90400521 -29344377 - L1MB7 LINE L1 -61 6123 5178 582 122 16 0 chr13 90400522 90400621 -29344277 + L1PA14 LINE L1 5847 5946 -206 337 270 26 9 chr13 90402006 90402121 -29342777 - L1MC3 LINE L1 -7 7778 7662 5998 239 55 41 chr13 90402181 90404053 -29340845 - L1MC3 LINE L1 -108 7677 5780 567 266 68 19 chr13 90405434 90405641 -29339257 - MER112 DNA MER1_type 0 260 44 301 241 18 0 chr13 90405651 90405763 -29339135 + (TA)n Simple_repeat Simple_repeat 2 115 0 242 236 36 0 chr13 90405860 90405915 -29338983 + L2 LINE L2 3216 3272 0 244 254 0 17 chr13 90405950 90406009 -29338889 - MER112 DNA MER1_type -195 65 8 1757 165 12 54 chr13 90406594 90406949 -29337949 - MLT2C1 LTR ERVL -35 429 18 403 264 100 0 chr13 90406959 90407099 -29337799 - MER119 DNA MER1_type -37 546 393 1953 97 0 0 chr13 90407207 90407465 -29337433 - AluSc SINE Alu -51 258 1 1628 165 88 23 chr13 90407465 90407816 -29337082 - Tigger2a DNA MER2_type -60 374 1 1239 286 69 18 chr13 90408046 90408493 -29336405 + MLT2B1 LTR ERVL 1 470 -50 238 217 0 0 chr13 90408531 90408577 -29336321 + L1MC4 LINE L1 6658 6703 -1339 * 253 231 22 44 chr13 90408549 90408640 -29336258 - L1MC4 LINE L1 -1339 6703 6615 320 191 12 0 chr13 90408646 90408730 -29336168 + (TA)n Simple_repeat Simple_repeat 1 85 0 270 157 10 0 chr13 90408730 90408785 -29336113 + MLT2C1 LTR ERVL 353 397 0 306 0 0 0 chr13 90410131 90410165 -29334733 + (CA)n Simple_repeat Simple_repeat 1 34 0 463 330 73 19 chr13 90410170 90410431 -29334467 + L2 LINE L2 1364 1638 -1676 4708 175 17 2 chr13 90410601 90411488 -29333410 - L1PA16 LINE L1 -6 6160 5261 1875 246 0 2 chr13 90411578 90412013 -29332885 + L1P LINE L1 4463 4896 -1250 865 288 77 6 chr13 90412014 90412340 -29332558 + L2 LINE L2 1633 1981 -1333 227 381 16 8 chr13 90412653 90412779 -29332119 + L2 LINE L2 2010 2136 -1178 945 173 6 11 chr13 90413337 90413516 -29331382 + MER5B DNA MER1_type 1 178 0 24 0 0 0 chr13 90413790 90413814 -29331084 + AT_rich Low_complexity Low_complexity 1 24 0 180 286 0 71 chr13 90415041 90415111 -29329787 - MIR SINE MIR -38 224 160 342 0 0 0 chr13 90415118 90415156 -29329742 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 49 0 0 chr13 90415158 90415199 -29329699 + AT_rich Low_complexity Low_complexity 1 41 0 7750 14 4 1 chr13 90415776 90417238 -29327660 + L1PA3 LINE L1 4691 6155 0 2883 98 16 35 chr13 90417238 90417724 -29327174 + L1MA5A LINE L1 5814 6296 -1 22 35 0 0 chr13 90417767 90417796 -29327102 + AT_rich Low_complexity Low_complexity 1 29 0 532 235 138 20 chr13 90418076 90418272 -29326626 + MER90 LTR ERV1 6 224 -351 812 124 0 0 chr13 90418272 90418385 -29326513 + AluSp SINE Alu 1 113 -200 1766 74 0 31 chr13 90418497 90418753 -29326145 - L1PA13 LINE L1 0 6163 5916 1698 224 0 16 chr13 90418975 90419346 -29325552 - MLT1A1 LTR MaLR 0 365 1 1340 210 31 7 chr13 90420323 90420613 -29324285 + AluJo SINE Alu 14 310 -2 405 222 0 0 chr13 90420919 90420991 -29323907 + MER7A DNA MER2_type 1 72 -276 626 261 76 0 chr13 90421372 90421529 -29323369 + MIR SINE MIR 77 245 -17 1682 191 10 0 chr13 90421653 90421962 -29322936 + AluJo SINE Alu 1 312 0 760 187 77 7 chr13 90422341 90422496 -29322402 - MER7A DNA MER2_type -182 164 1 209 219 0 61 chr13 90422511 90422593 -29322305 + (CATATA)n Simple_repeat Simple_repeat 3 79 0 413 252 15 8 chr13 90422599 90422730 -29322168 + L1MC4 LINE L1 7911 8042 0 456 19 0 0 chr13 90424172 90424225 -29320673 + (TA)n Simple_repeat Simple_repeat 2 54 0 274 254 0 0 chr13 90424225 90424288 -29320610 - L1MC4 LINE L1 -1332 6710 6648 912 263 14 0 chr13 90424855 90425064 -29319834 - MLT1E3 LTR MaLR -390 234 23 718 284 5 0 chr13 90425065 90425259 -29319639 + MLT1C LTR MaLR 4 198 -269 242 309 12 0 chr13 90425493 90425564 -29319334 + MLT1C LTR MaLR 147 218 -249 2275 234 21 13 chr13 90425564 90426038 -29318860 + MER70B LTR ERVL 1 478 -100 936 202 11 11 chr13 90426085 90426273 -29318625 + MLT1C LTR MaLR 280 467 0 184 349 23 78 chr13 90426568 90426697 -29318201 + L2 LINE L2 3182 3303 -10 2560 122 25 5 chr13 90427006 90427440 -29317458 - L1PA10 LINE L1 -16 6152 5710 308 339 16 16 chr13 90427717 90427838 -29317060 - MER5A DNA MER1_type -6 183 63 * 327 297 61 14 chr13 90427733 90427881 -29317017 + MER5A DNA MER1_type 32 186 -3 275 192 39 0 chr13 90428202 90428254 -29316644 + MLT1I LTR MaLR 288 341 -68 21 57 0 0 chr13 90428876 90428911 -29315987 + AT_rich Low_complexity Low_complexity 1 35 0 1528 51 5 0 chr13 90428928 90429124 -29315774 - L1PA8 LINE L1 -305 5867 5671 2163 75 0 20 chr13 90429124 90429430 -29315468 + L1PA8 LINE L1 5873 6172 0 21 0 0 0 chr13 90430131 90430152 -29314746 + AT_rich Low_complexity Low_complexity 1 21 0 4758 16 32 7 chr13 90430476 90431046 -29313852 - L1PA2 LINE L1 -1 6154 5571 1726 37 0 0 chr13 90431046 90431261 -29313637 + L1PA2 LINE L1 5352 5566 -589 3814 166 48 4 chr13 90431591 90432325 -29312573 - Tigger3b DNA MER2_type -464 767 2 295 350 86 11 chr13 90432328 90432514 -29312384 - MLT2B1 LTR ERVL -40 480 281 560 218 21 21 chr13 90432579 90432721 -29312177 - MLT2D LTR ERVL -271 143 2 3276 267 96 26 chr13 90432722 90433857 -29311041 - HERVL-D LTR ERVL 0 5654 4441 13032 209 22 25 chr13 90433864 90434105 -29310793 - HERVL-D LTR ERVL -2174 3590 3350 1890 183 80 8 chr13 90434105 90434504 -29310394 - MSTA LTR MaLR 0 428 1 13032 209 22 25 chr13 90434504 90434630 -29310268 - HERVL-D LTR ERVL -2414 3350 3225 1768 170 24 42 chr13 90434630 90435012 -29309886 + THE1C LTR MaLR 1 375 0 13032 209 22 25 chr13 90435012 90437414 -29307484 - HERVL-D LTR ERVL -2539 3225 827 1156 196 39 106 chr13 90437418 90437827 -29307071 - MLT2D LTR ERVL -37 483 5 219 139 0 0 chr13 90438055 90438091 -29306807 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr13 90438521 90438542 -29306356 + AT_rich Low_complexity Low_complexity 1 21 0 2270 259 80 77 chr13 90438775 90438927 -29305971 + L1M4 LINE L1 2721 2871 -3275 2247 67 37 7 chr13 90438927 90439105 -29305793 - AluY SINE Alu -2 309 117 204 40 0 0 chr13 90439105 90439130 -29305768 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2247 67 37 7 chr13 90439130 90439249 -29305649 - AluY SINE Alu -194 117 3 2270 259 80 77 chr13 90439249 90440211 -29304687 + L1M4 LINE L1 2871 3844 -2302 1844 153 0 25 chr13 90440211 90440531 -29304367 + AluSx SINE Alu 1 312 0 2270 259 80 77 chr13 90440531 90441042 -29303856 + L1M4 LINE L1 3844 4352 -1794 975 266 36 30 chr13 90441470 90441966 -29302932 + L1M4 LINE L1 4387 4885 -1261 28 29 0 0 chr13 90442795 90442830 -29302068 + AT_rich Low_complexity Low_complexity 1 35 0 2213 98 3 0 chr13 90442936 90443231 -29301667 - AluSx SINE Alu -16 296 1 235 109 26 6 chr13 90443231 90443269 -29301629 + MSTA LTR MaLR 387 428 0 805 258 0 6 chr13 90443374 90443552 -29301346 + MER45A DNA AcHobo 2 178 0 236 169 0 17 chr13 90445483 90445537 -29299361 + L1MC4 LINE L1 6651 6704 -1334 330 26 0 0 chr13 90445537 90445576 -29299322 + (GA)n Simple_repeat Simple_repeat 2 40 0 29 70 0 0 chr13 90445861 90445918 -29298980 + AT_rich Low_complexity Low_complexity 1 57 0 267 173 0 0 chr13 90446427 90446479 -29298419 + (TA)n Simple_repeat Simple_repeat 1 52 0 2562 55 0 3 chr13 90446796 90447104 -29297794 - AluY SINE Alu -4 307 1 23 0 0 0 chr13 90447446 90447469 -29297429 + AT_rich Low_complexity Low_complexity 1 23 0 187 29 86 0 chr13 90447512 90447547 -29297351 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2161 92 7 0 chr13 90447550 90447831 -29297067 - AluSp SINE Alu -30 283 1 1466 139 20 40 chr13 90447832 90448133 -29296765 - AluSx SINE Alu -15 297 3 404 259 19 0 chr13 90448697 90448805 -29296093 - L1ME3A LINE L1 -9 6161 6052 1696 127 3 60 chr13 90448814 90449128 -29295770 + AluSx SINE Alu 5 300 -12 222 37 0 0 chr13 90449128 90449155 -29295743 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 30 45 0 0 chr13 90450080 90450124 -29294774 + AT_rich Low_complexity Low_complexity 1 44 0 210 143 0 0 chr13 90450909 90450944 -29293954 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 210 224 0 0 chr13 90451141 90451190 -29293708 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 387 207 19 19 chr13 90451378 90451534 -29293364 + L1MA4A LINE L1 6062 6278 -25 29 60 0 0 chr13 90451761 90451811 -29293087 + AT_rich Low_complexity Low_complexity 1 50 0 2130 97 7 0 chr13 90452577 90452857 -29292041 + AluSp SINE Alu 1 285 -28 255 79 0 0 chr13 90452857 90452895 -29292003 + (CA)n Simple_repeat Simple_repeat 1 38 0 834 226 0 6 chr13 90452944 90453112 -29291786 - FAM SINE Alu -8 167 1 365 267 0 0 chr13 90454494 90454580 -29290318 + Charlie1 DNA MER1_type 2652 2737 -24 21 0 0 0 chr13 90455927 90455948 -29288950 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 90456891 90456913 -29287985 + AT_rich Low_complexity Low_complexity 1 22 0 710 12 0 0 chr13 90457179 90457265 -29287633 + L1PA4 LINE L1 6070 6155 0 237 377 94 11 chr13 90458344 90458535 -29286363 + L2 LINE L2 2335 2541 -773 313 345 20 14 chr13 90458548 90458696 -29286202 + MLT2E LTR ERVL 6 154 -474 261 339 47 8 chr13 90458925 90459052 -29285846 + MLT2E LTR ERVL 478 609 -19 439 316 130 49 chr13 90459100 90459699 -29285199 + L2 LINE L2 2669 3313 0 2135 267 92 64 chr13 90460450 90461517 -29283381 + L1MC2 LINE L1 17 1113 -4932 855 291 95 23 chr13 90461524 90461912 -29282986 - MER57B LTR ERV1 -18 416 1 651 219 24 4 chr13 90461912 90462122 -29282776 + L1MC2 LINE L1 1098 1511 -4851 9471 230 16 53 chr13 90462124 90464469 -29280429 - ERVL LTR ERVL -2731 3033 777 200 35 35 0 chr13 90464620 90464649 -29280249 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 519 204 45 23 chr13 90464805 90464937 -29279961 - MLT2B1 LTR ERVL -374 146 12 2228 226 103 18 chr13 90465062 90466242 -29278656 + L1MC2 LINE L1 5076 5821 -743 1362 63 5 53 chr13 90466242 90466449 -29278449 + L1PA3 LINE L1 5959 6155 0 1467 186 63 0 chr13 90466450 90466799 -29278099 + L1MC2 LINE L1 6379 6749 -13 1292 181 0 101 chr13 90466804 90467130 -29277768 + AluJb SINE Alu 3 295 -17 22 35 0 0 chr13 90467133 90467162 -29277736 + AT_rich Low_complexity Low_complexity 1 29 0 1651 206 70 13 chr13 90468774 90469147 -29275751 + MLT2C2 LTR ERVL 1 394 -70 2341 93 0 13 chr13 90469147 90469460 -29275438 - AluY SINE Alu 0 311 3 198 91 0 0 chr13 90469484 90469517 -29275381 + (TC)n Simple_repeat Simple_repeat 1 33 0 269 131 15 19 chr13 90469517 90469539 -29275359 + MLT2C2 LTR ERVL 408 429 -35 315 0 0 0 chr13 90469539 90469574 -29275324 + (TG)n Simple_repeat Simple_repeat 2 36 0 269 131 15 19 chr13 90469574 90469618 -29275280 + MLT2C2 LTR ERVL 429 464 0 4871 183 27 12 chr13 90469671 90469716 -29275182 - L1P4 LINE L1 -507 5658 5615 2378 144 6 0 chr13 90469716 90470078 -29274820 + THE1B LTR MaLR 1 364 0 4871 183 27 12 chr13 90470078 90471453 -29273445 - L1P4 LINE L1 -550 5615 4219 2294 22 0 0 chr13 90471456 90471723 -29273175 - L1P2 LINE L1 -528 5627 5361 1122 28 28 0 chr13 90471724 90471868 -29273030 + L1P2 LINE L1 5211 5358 -788 280 284 134 38 chr13 90471943 90472182 -29272716 - HAL1 LINE L1 -1816 691 430 1495 171 32 29 chr13 90473165 90473446 -29271452 + AluJb SINE Alu 1 282 -30 471 63 0 0 chr13 90473449 90473512 -29271386 + (CA)n Simple_repeat Simple_repeat 2 64 0 258 338 0 0 chr13 90474911 90474991 -29269907 + AluSg/x SINE Alu 206 285 -17 2572 190 41 38 chr13 90475026 90475678 -29269220 + L1MA7 LINE L1 5630 6283 -8 547 256 61 18 chr13 90475847 90476011 -29268887 + MLT1C LTR MaLR 245 415 -52 34 72 0 0 chr13 90476514 90476583 -29268315 + AT_rich Low_complexity Low_complexity 1 69 0 387 294 62 2 chr13 90477675 90477835 -29267063 - L1MC/D LINE L1 -330 5791 5651 1506 225 108 50 chr13 90478382 90478884 -29266014 + MER34 LTR ERV1 11 541 -1 1646 178 3 13 chr13 90479610 90479913 -29264985 + L1PA16 LINE L1 5569 5868 -298 345 218 17 149 chr13 90480483 90480540 -29264358 + LTR52 LTR ERVL 1 64 -357 5277 73 0 0 chr13 90480540 90481227 -29263671 - L1PA8 LINE L1 -15 6157 5471 345 218 17 149 chr13 90481227 90481343 -29263555 + LTR52 LTR ERVL 64 151 -270 413 341 114 28 chr13 90481720 90482107 -29262791 + L1MB4 LINE L1 3403 3822 -2324 22 35 0 0 chr13 90482116 90482145 -29262753 + AT_rich Low_complexity Low_complexity 1 29 0 1971 130 7 3 chr13 90482192 90482492 -29262406 + AluSx SINE Alu 1 301 -11 295 243 12 87 chr13 90482654 90482827 -29262071 + L1MB4 LINE L1 4383 4542 -1604 345 100 0 0 chr13 90483988 90484038 -29260860 - MADE1 DNA Mariner 0 80 31 322 115 0 58 chr13 90484585 90484637 -29260261 - MLT1J LTR MaLR -69 442 394 2870 181 20 3 chr13 90485034 90485621 -29259277 + L1MB4 LINE L1 5579 6175 -5 269 288 151 55 chr13 90486727 90486946 -29257952 - MIR SINE MIR -6 256 17 22 35 0 0 chr13 90487165 90487194 -29257704 + AT_rich Low_complexity Low_complexity 1 29 0 1154 81 38 0 chr13 90488050 90488210 -29256688 + L1MA1 LINE L1 5771 5936 -366 3684 69 0 0 chr13 90488427 90488890 -29256008 + L1PA7 LINE L1 5534 5996 -158 2104 102 7 0 chr13 90490611 90490905 -29253993 + AluSg SINE Alu 15 310 0 1836 142 22 0 chr13 90491036 90491336 -29253562 + AluSx SINE Alu 5 310 0 1133 210 108 32 chr13 90492188 90492559 -29252339 + MER69 DNA AcHobo 2083 2481 -45 22 0 0 0 chr13 90492673 90492695 -29252203 + AT_rich Low_complexity Low_complexity 1 22 0 1889 108 24 44 chr13 90493641 90493936 -29250962 - AluSx SINE Alu -17 295 7 237 132 19 19 chr13 90494004 90494057 -29250841 - L1MC5 LINE L1 -76 7885 7833 2247 92 0 13 chr13 90494083 90494389 -29250509 - AluSg SINE Alu -8 302 1 303 104 0 0 chr13 90495288 90495336 -29249562 + (GA)n Simple_repeat Simple_repeat 2 49 0 236 30 30 0 chr13 90495334 90495367 -29249531 + (GGA)n Simple_repeat Simple_repeat 3 36 0 * 252 0 0 0 chr13 90496492 90496520 -29248378 + (TA)n Simple_repeat Simple_repeat 2 29 0 191 372 96 0 chr13 90497502 90497596 -29247302 + L3 LINE CR1 1425 1527 -50 476 242 35 98 chr13 90498667 90498991 -29245907 + MLT1I LTR MaLR 95 538 -4 31 0 0 0 chr13 90500125 90500156 -29244742 + AT_rich Low_complexity Low_complexity 1 31 0 578 39 0 0 chr13 90501264 90501341 -29243557 + L1PB1 LINE L1 6074 6150 -1 598 300 48 22 chr13 90502258 90502488 -29242410 + MIR SINE MIR 20 252 -10 287 295 62 18 chr13 90502642 90502754 -29242144 - MIR SINE MIR -28 234 118 198 0 0 0 chr13 90503800 90503822 -29241076 + (TA)n Simple_repeat Simple_repeat 2 23 0 449 88 0 0 chr13 90504441 90504509 -29240389 - AluY SINE Alu -10 302 235 1071 69 0 21 chr13 90504509 90504653 -29240245 - AluY SINE Alu -170 141 1 1541 172 0 40 chr13 90504691 90504988 -29239910 - AluJb SINE Alu -14 298 14 691 228 82 0 chr13 90507158 90507316 -29237582 - MER58B DNA MER1_type -36 305 135 19255 196 18 15 chr13 90508009 90512949 -29231949 - L1 LINE L1 -2605 4960 14 210 179 0 0 chr13 90513612 90513668 -29231230 + T-rich Low_complexity Low_complexity 1 56 0 6121 34 0 0 chr13 90513669 90514398 -29230500 - L1PA3 LINE L1 -1 6154 5426 23 68 0 0 chr13 90514999 90515043 -29229855 + AT_rich Low_complexity Low_complexity 1 44 0 28 79 0 0 chr13 90515121 90515184 -29229714 + AT_rich Low_complexity Low_complexity 1 63 0 2004 155 0 0 chr13 90515391 90515701 -29229197 + AluSq SINE Alu 1 310 -3 1273 271 70 28 chr13 90516624 90517081 -29227817 - MLT1D LTR MaLR -29 476 1 1777 190 87 48 chr13 90517486 90517902 -29226996 + MSTB1 LTR MaLR 1 432 0 44 0 0 48 chr13 90517920 90517983 -29226915 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr13 90518078 90518100 -29226798 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 90518309 90518332 -29226566 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 90519284 90519309 -29225589 + (T)n Simple_repeat Simple_repeat 1 25 0 1033 252 24 17 chr13 90519322 90519612 -29225286 + LTR52 LTR ERVL 44 335 -86 2162 189 69 2 chr13 90519983 90520418 -29224480 + Tigger1 DNA MER2_type 1 464 -1954 2394 146 3 0 chr13 90520418 90520781 -29224117 - THE1B LTR MaLR 0 364 1 * 11056 148 31 14 chr13 90520781 90522704 -29222194 + Tigger1 DNA MER2_type 462 2418 0 24 53 0 0 chr13 90523277 90523315 -29221583 + AT_rich Low_complexity Low_complexity 1 38 0 1572 199 3 3 chr13 90523499 90523820 -29221078 - AluJb SINE Alu 0 321 1 189 0 0 0 chr13 90523829 90523850 -29221048 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 357 24 0 0 chr13 90523862 90523904 -29220994 + (TG)n Simple_repeat Simple_repeat 1 42 0 955 206 44 26 chr13 90523918 90524146 -29220752 - L1PA16 LINE L1 -13 6153 5922 * 956 180 0 0 chr13 90524140 90524323 -29220575 + L1 LINE L1 3655 3837 -2309 21 0 0 0 chr13 90524379 90524400 -29220498 + AT_rich Low_complexity Low_complexity 1 21 0 2121 101 24 0 chr13 90524745 90525041 -29219857 + AluSp SINE Alu 1 303 -10 28 0 0 0 chr13 90525092 90525120 -29219778 + AT_rich Low_complexity Low_complexity 1 28 0 424 280 11 11 chr13 90575910 90576003 -29168895 + MER5A DNA MER1_type 13 105 -84 193 283 43 0 chr13 90576834 90576880 -29168018 - L2 LINE L2 -23 3290 3243 285 361 76 13 chr13 90577155 90577393 -29167505 - L2 LINE L2 -421 2893 2641 1733 161 7 3 chr13 90578392 90578690 -29166208 - AluSx SINE Alu -11 301 3 2081 122 0 13 chr13 90579841 90580144 -29164754 + AluSq SINE Alu 1 299 -14 198 307 73 51 chr13 90581075 90581212 -29163686 + MIR SINE MIR 60 199 -63 27 29 0 0 chr13 90582283 90582317 -29162581 + AT_rich Low_complexity Low_complexity 1 34 0 258 391 0 16 chr13 90583615 90583743 -29161155 + MIR SINE MIR 137 262 0 1115 204 90 90 chr13 90583818 90584298 -29160600 + MLT1C LTR MaLR 1 467 0 293 236 24 47 chr13 90585213 90585340 -29159558 - L1MCc LINE L1 -6249 174 51 404 269 65 0 chr13 90585404 90585512 -29159386 + FLAM_A SINE Alu 1 115 -18 1863 148 30 6 chr13 90586808 90587140 -29157758 - Tigger1 DNA MER2_type 0 2418 2079 459 257 31 86 chr13 90587264 90587486 -29157412 + LTR40b LTR ERVL 1 210 -252 * 483 171 0 0 chr13 90587474 90587556 -29157342 + LTR40b LTR ERVL 381 462 0 547 308 60 23 chr13 90587564 90587996 -29156902 + L1ME3A LINE L1 4544 4991 -1155 668 291 81 31 chr13 90588158 90588577 -29156321 + L1ME3A LINE L1 5461 5900 -270 565 319 99 23 chr13 90588682 90589287 -29155611 - L1M4 LINE L1 -2005 4141 3491 22 35 0 0 chr13 90589396 90589425 -29155473 + AT_rich Low_complexity Low_complexity 1 29 0 288 198 0 37 chr13 90589915 90589996 -29154902 - L1M4 LINE L1 -3201 2945 2868 37 93 0 0 chr13 90590264 90590371 -29154527 + AT_rich Low_complexity Low_complexity 1 107 0 219 36 0 0 chr13 90590528 90590556 -29154342 + (T)n Simple_repeat Simple_repeat 1 28 0 2329 65 0 31 chr13 90590596 90590917 -29153981 - AluY SINE Alu 0 311 1 422 275 70 47 chr13 90591088 90591259 -29153639 + L1M4 LINE L1 609 783 -5759 2528 185 72 2 chr13 90591511 90592148 -29152750 + L1PB4 LINE L1 5107 5788 -368 582 191 0 0 chr13 90592296 90592411 -29152487 + L1PB4 LINE L1 6042 6156 0 2392 252 56 50 chr13 90592411 90593443 -29151455 + L1M4 LINE L1 1120 2157 -4489 7159 39 1 2 chr13 90593449 90594357 -29150541 - L1PA4 LINE L1 -2792 3354 2448 755 41 0 0 chr13 90594354 90594451 -29150447 + L1PA4 LINE L1 3328 3424 -2722 * 13107 37 5 0 chr13 90594484 90596870 -29148028 + L1PA4 LINE L1 3755 6155 0 1148 229 62 62 chr13 90596874 90597992 -29146906 + L1M4 LINE L1 2268 3606 -3038 1815 186 58 32 chr13 90598028 90598495 -29146403 + L1MA9 LINE L1 5837 6310 -2 1621 108 0 5 chr13 90598593 90598816 -29146082 + AluSq SINE Alu 1 222 -91 30 27 0 0 chr13 90599298 90599335 -29145563 + AT_rich Low_complexity Low_complexity 1 37 0 4153 149 33 4 chr13 90601745 90602712 -29142186 - L1MA1 LINE L1 -337 5965 4972 1262 160 22 48 chr13 90602715 90602983 -29141915 - L1MA1 LINE L1 -1852 4294 4034 2653 10 0 0 chr13 90603016 90603310 -29141588 - AluYa5 SINE Alu -17 294 1 371 291 101 12 chr13 90603452 90603699 -29141199 + L1MC4 LINE L1 7093 7361 -681 33 56 0 0 chr13 90604020 90604074 -29140824 + AT_rich Low_complexity Low_complexity 1 54 0 26 0 0 0 chr13 90604212 90604238 -29140660 + AT_rich Low_complexity Low_complexity 1 26 0 599 232 46 0 chr13 90604481 90604632 -29140266 - L1ME2 LINE L1 -328 6254 6097 25 0 0 0 chr13 90605627 90605652 -29139246 + AT_rich Low_complexity Low_complexity 1 25 0 621 313 70 31 chr13 90606124 90606426 -29138472 + L2 LINE L2 2459 2781 -533 2120 128 0 13 chr13 90606426 90606709 -29138189 + AluSx SINE Alu 1 281 -31 270 0 0 0 chr13 90606709 90606739 -29138159 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2120 128 0 13 chr13 90606739 90606768 -29138130 + AluSx SINE Alu 281 309 -3 621 313 70 31 chr13 90606768 90606848 -29138050 + L2 LINE L2 2781 2856 -458 6285 90 18 0 chr13 90606973 90607872 -29137026 - L1PA7 LINE L1 -1491 4655 3741 6822 70 1 8 chr13 90607872 90609391 -29135507 + L1PA7 LINE L1 4642 6154 0 21 36 0 0 chr13 90609992 90610020 -29134878 + AT_rich Low_complexity Low_complexity 1 28 0 1699 87 62 11 chr13 90610026 90610302 -29134596 - AluY SINE Alu -21 290 1 24 32 0 0 chr13 90610576 90610607 -29134291 + AT_rich Low_complexity Low_complexity 1 31 0 285 309 61 46 chr13 90610943 90611205 -29133693 - L1ME2 LINE L1 -2084 6142 5877 252 203 38 0 chr13 90611405 90611484 -29133414 - L1ME2 LINE L1 -914 5650 5569 409 293 70 57 chr13 90611668 90611897 -29133001 + MLT2F LTR ERVL 194 425 -238 1557 258 112 36 chr13 90612723 90613306 -29131592 - L1ME2 LINE L1 -4541 2023 1355 3009 186 38 0 chr13 90613306 90613941 -29130957 - L1MA6 LINE L1 0 6300 5642 1557 258 112 36 chr13 90613941 90614207 -29130691 - L1ME2 LINE L1 -5209 1355 1110 728 303 38 7 chr13 90614212 90614499 -29130399 - L1ME2 LINE L1 -5551 494 199 287 358 8 0 chr13 90614588 90614711 -29130187 - L1ME2 LINE L1 -5830 215 92 2007 286 82 10 chr13 90614830 90615965 -29128933 + L1M4 LINE L1 2118 3334 -2812 854 265 110 50 chr13 90615979 90617057 -29127841 + L1M4 LINE L1 945 2247 -4578 6601 68 14 0 chr13 90619310 90620639 -29124259 - L1PA7 LINE L1 -11 6143 4802 1699 136 0 68 chr13 90621311 90621620 -29123278 - AluSx SINE Alu -18 294 7 21 0 0 0 chr13 90621735 90621756 -29123142 + AT_rich Low_complexity Low_complexity 1 21 0 233 237 42 8 chr13 90621994 90622112 -29122786 + (TTATA)n Simple_repeat Simple_repeat 5 126 0 23 68 0 0 chr13 90622761 90622805 -29122093 + AT_rich Low_complexity Low_complexity 1 44 0 1947 251 64 13 chr13 90623198 90624003 -29120895 + L1M4 LINE L1 2590 3398 -3246 292 292 52 99 chr13 90624215 90624448 -29120450 + L1M4 LINE L1 43 264 -6278 2200 94 7 0 chr13 90624643 90624941 -29119957 + AluSp SINE Alu 1 300 -13 324 298 105 0 chr13 90625050 90625164 -29119734 + L1M4 LINE L1 800 925 -5721 907 220 134 31 chr13 90625294 90625609 -29119289 + L1M4 LINE L1 850 1131 -5411 1631 210 14 11 chr13 90625609 90625956 -29118942 - MER7A DNA MER2_type 0 346 1 907 220 134 31 chr13 90625956 90626153 -29118745 + L1M4 LINE L1 1131 1415 -5127 1167 236 113 25 chr13 90626176 90627073 -29117825 + L1M4 LINE L1 2174 3142 -3502 208 64 85 0 chr13 90627082 90627129 -29117769 + (TA)n Simple_repeat Simple_repeat 2 52 0 1497 138 0 5 chr13 90627325 90627542 -29117356 - AluSx SINE Alu -96 216 1 2180 104 0 23 chr13 90627630 90627939 -29116959 - AluY SINE Alu -9 302 1 985 314 75 37 chr13 90628189 90628750 -29116148 - L2 LINE L2 -347 2967 2386 1567 127 4 0 chr13 90628791 90629027 -29115871 + MLT2A2 LTR ERVL 5 241 -212 953 175 30 25 chr13 90629326 90629526 -29115372 + L1PA16 LINE L1 5966 6166 0 994 72 0 5 chr13 90629870 90630013 -29114885 + L1ME LINE L1 5649 5790 -372 379 214 15 0 chr13 90630019 90630150 -29114748 + (TA)n Simple_repeat Simple_repeat 1 133 0 258 105 0 0 chr13 90630767 90630805 -29114093 + (TC)n Simple_repeat Simple_repeat 1 38 0 1195 232 66 102 chr13 90631258 90631542 -29113356 - MLT1D LTR MaLR 0 505 245 261 0 0 0 chr13 90631542 90631571 -29113327 + (CA)n Simple_repeat Simple_repeat 1 29 0 1195 232 66 102 chr13 90631571 90631798 -29113100 - MLT1D LTR MaLR -260 245 12 317 345 25 0 chr13 90631837 90631956 -29112942 + MIR SINE MIR 5 126 -136 837 204 42 111 chr13 90632188 90632565 -29112333 - HAL1 LINE L1 0 2507 2157 24 0 0 0 chr13 90632839 90632863 -29112035 + AT_rich Low_complexity Low_complexity 1 24 0 44 46 0 0 chr13 90632988 90633053 -29111845 + AT_rich Low_complexity Low_complexity 1 65 0 258 169 0 0 chr13 90634785 90634850 -29110048 + (CA)n Simple_repeat Simple_repeat 1 65 0 487 277 50 0 chr13 90635149 90635290 -29109608 - L1MA10 LINE L1 -14 6320 6173 402 225 0 12 chr13 90635561 90635640 -29109258 + Tigger5 DNA MER2_type 1 78 -2245 497 165 0 0 chr13 90635640 90635719 -29109179 - Tigger5 DNA MER2_type -3 2320 2242 389 244 22 0 chr13 90635701 90635791 -29109107 + Tigger5 DNA MER2_type 2232 2323 0 * 26 50 0 0 chr13 90635791 90635831 -29109067 + AT_rich Low_complexity Low_complexity 1 40 0 310 258 52 100 chr13 90636386 90636633 -29108265 - MLT1J LTR MaLR -235 276 3 1815 191 21 3 chr13 90636921 90637246 -29107652 + MLT1A1 LTR MaLR 1 331 -34 1461 173 0 4 chr13 90637280 90637534 -29107364 + AluJb SINE Alu 3 255 -57 236 186 0 29 chr13 90637558 90637628 -29107270 - MER115 DNA AcHobo -75 618 551 404 414 11 30 chr13 90637835 90638101 -29106797 - MER115 DNA AcHobo -432 261 1 813 31 0 0 chr13 90638161 90638259 -29106639 + L1PA5 LINE L1 6053 6150 -4 22 70 0 0 chr13 90639268 90639311 -29105587 + AT_rich Low_complexity Low_complexity 1 43 0 3528 189 64 17 chr13 90639376 90640337 -29104561 + L1MB4 LINE L1 5176 6180 0 2931 214 47 3 chr13 90641035 90641718 -29103180 + L1MC3 LINE L1 7073 7785 0 221 191 24 119 chr13 90641752 90641836 -29103062 - MER5A DNA MER1_type -91 98 23 539 279 44 10 chr13 90641844 90642022 -29102876 + MER5A DNA MER1_type 2 169 -9 5965 211 56 23 chr13 90642482 90645314 -29099584 + L1MA8 LINE L1 2971 6051 -240 530 352 59 17 chr13 90645362 90645768 -29099130 - MLT1J LTR MaLR -8 503 81 488 252 61 0 chr13 90648181 90648312 -29096586 + HERVL40 LTR ERVL 5392 5530 0 1001 261 107 42 chr13 90648316 90648794 -29096104 + LTR40a LTR ERVL 5 513 -6 320 359 89 30 chr13 90651042 90651376 -29093522 + L2 LINE L2 559 929 -2385 543 262 85 38 chr13 90651376 90651693 -29093205 + MER46C DNA MER2_type 5 336 -2 320 359 89 30 chr13 90651693 90651818 -29093080 + L2 LINE L2 929 1045 -2269 204 281 27 116 chr13 90652240 90652386 -29092512 + L2 LINE L2 3158 3290 -23 22 0 0 0 chr13 90652667 90652689 -29092209 + AT_rich Low_complexity Low_complexity 1 22 0 239 241 0 19 chr13 90652953 90653007 -29091891 + GA-rich Low_complexity Low_complexity 2 54 0 637 239 133 6 chr13 90653356 90653536 -29091362 + MER58A DNA MER1_type 2 204 -20 183 42 0 0 chr13 90653537 90653561 -29091337 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1121 185 31 4 chr13 90653854 90654113 -29090785 + L1MA8 LINE L1 6024 6289 -2 2685 26 0 3 chr13 90654116 90654428 -29090470 + AluY SINE Alu 1 311 0 9350 141 12 56 chr13 90655271 90657023 -29087875 - Tigger1 DNA MER2_type -743 1675 1 302 395 65 0 chr13 90659006 90659130 -29085768 - L2 LINE L2 0 3272 3141 543 266 56 64 chr13 90659413 90659652 -29085246 + MER46C DNA MER2_type 3 241 -97 1563 162 37 34 chr13 90659652 90659948 -29084950 + AluJb SINE Alu 5 301 -11 543 266 56 64 chr13 90659948 90659975 -29084923 + MER46C DNA MER2_type 241 267 -71 185 0 40 0 chr13 90661434 90661459 -29083439 + (TTG)n Simple_repeat Simple_repeat 2 27 0 259 333 101 31 chr13 90661805 90661934 -29082964 + L2 LINE L2 3134 3271 -1 417 379 63 13 chr13 90662038 90662355 -29082543 + L3 LINE CR1 1214 1546 -31 1836 114 8 0 chr13 90662511 90662774 -29082124 - AluSp SINE Alu -5 308 44 549 309 83 46 chr13 90663457 90663781 -29081117 + MLT1I LTR MaLR 74 409 0 342 366 38 26 chr13 90665172 90665437 -29079461 - L2 LINE L2 -10 3303 3036 198 300 10 90 chr13 90665443 90665543 -29079355 - L2 LINE L2 -3140 174 83 23 78 0 0 chr13 90666213 90666264 -29078634 + AT_rich Low_complexity Low_complexity 1 51 0 184 159 16 16 chr13 90666489 90666552 -29078346 + A-rich Low_complexity Low_complexity 4 66 0 1178 256 60 9 chr13 90666631 90667077 -29077821 + Charlie4a DNA MER1_type 30 498 -10 228 184 0 0 chr13 90667349 90667398 -29077500 + (TG)n Simple_repeat Simple_repeat 2 50 0 409 362 152 8 chr13 90668321 90668838 -29076060 - L2 LINE L2 -33 3280 2691 35 54 0 0 chr13 90668854 90668910 -29075988 + AT_rich Low_complexity Low_complexity 1 56 0 2038 153 43 3 chr13 90671206 90671553 -29073345 + THE1B LTR MaLR 1 361 -3 8376 128 25 33 chr13 90671561 90673135 -29071763 + THE1B-int LTR MaLR 15 1580 0 1841 171 43 6 chr13 90673136 90673486 -29071412 + THE1B LTR MaLR 2 364 0 355 247 100 63 chr13 90674052 90674242 -29070656 + MLT1J LTR MaLR 313 509 -2 232 102 41 0 chr13 90674253 90674302 -29070596 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 25 31 0 0 chr13 90674315 90674347 -29070551 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr13 90674716 90674754 -29070144 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr13 90675235 90675270 -29069628 + AT_rich Low_complexity Low_complexity 1 35 0 1975 112 7 7 chr13 90676742 90677043 -29067855 - AluSp SINE Alu 0 306 6 300 111 0 0 chr13 90677105 90677150 -29067748 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 444 19 0 0 chr13 90677934 90677987 -29066911 + (TG)n Simple_repeat Simple_repeat 2 54 0 1217 220 118 6 chr13 90678571 90678926 -29065972 - MSTD LTR MaLR -1 395 1 1073 228 0 17 chr13 90679979 90680211 -29064687 + AluJo SINE Alu 1 228 -84 279 228 18 18 chr13 90680211 90680268 -29064630 - AluJ/F(R)AM SINE Alu -107 195 139 * 320 225 88 25 chr13 90680218 90680326 -29064572 + AluJb SINE Alu 198 310 0 1225 179 21 62 chr13 90681062 90681352 -29063546 + L1MA9 LINE L1 5504 5781 -531 1500 233 71 28 chr13 90681526 90681990 -29062908 + L1MA9 LINE L1 5793 6276 -36 253 229 156 9 chr13 90682762 90682871 -29062027 + L1ME3A LINE L1 6041 6165 -5 426 312 41 46 chr13 90682919 90683137 -29061761 - MIR SINE MIR -4 258 42 23 0 0 0 chr13 90683267 90683290 -29061608 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr13 90683722 90683764 -29061134 + AT_rich Low_complexity Low_complexity 1 42 0 378 107 0 0 chr13 90683771 90683827 -29061071 + (TA)n Simple_repeat Simple_repeat 1 56 0 3019 55 0 3 chr13 90683864 90684244 -29060654 + L1PA7 LINE L1 5776 6154 0 294 363 0 0 chr13 90684561 90684674 -29060224 + LTR33 LTR ERVL 10 122 -399 245 235 24 35 chr13 90685681 90685766 -29059132 - L1MC5 LINE L1 -227 7734 7651 * 2890 189 53 21 chr13 90685762 90686425 -29058473 + L1MC1 LINE L1 5650 6333 0 3746 192 58 56 chr13 90686713 90687600 -29057298 + MER21A LTR ERV1 36 923 -8 20026 203 36 14 chr13 90687605 90691651 -29053247 + MER21A-int LTR ERV1 1 4135 -56 830 130 12 49 chr13 90691714 90691876 -29053022 - L1MA2 LINE L1 -1 6303 6148 588 179 30 71 chr13 90691931 90692099 -29052799 + MER21A LTR ERV1 1 161 -770 1936 130 21 0 chr13 90692246 90692531 -29052367 + AluSq SINE Alu 1 291 -22 386 325 8 51 chr13 90692617 90692851 -29052047 + L2 LINE L2 3090 3313 0 1759 159 10 14 chr13 90693081 90693377 -29051521 + AluSx SINE Alu 3 297 -15 551 277 62 20 chr13 90693999 90694194 -29050704 + MIR SINE MIR 50 252 -10 946 229 0 0 chr13 90694210 90694411 -29050487 - Tigger4(Zombi) DNA MER2_type 0 2731 2531 573 218 9 0 chr13 90694409 90694519 -29050379 - Tigger4(Zombi) DNA MER2_type -2618 113 3 * 219 268 100 74 chr13 90694564 90694754 -29050144 - L2 LINE L2 -21 3292 3098 34 0 0 0 chr13 90694930 90694964 -29049934 + AT_rich Low_complexity Low_complexity 1 34 0 7333 36 5 0 chr13 90695149 90696062 -29048836 + L1PA4 LINE L1 5237 6153 -2 3389 117 14 2 chr13 90696335 90696840 -29048058 + MER9 LTR ERVK 1 511 0 2316 94 0 0 chr13 90697357 90697656 -29047242 - AluSq SINE Alu -14 299 1 309 339 104 51 chr13 90699132 90699312 -29045586 + L1ME3A LINE L1 5341 5510 -660 1737 68 0 87 chr13 90699312 90699577 -29045321 + AluY SINE Alu 59 300 -11 309 339 104 51 chr13 90699577 90700117 -29044781 + L1ME3A LINE L1 5510 6070 -100 26 30 0 0 chr13 90701364 90701397 -29043501 + AT_rich Low_complexity Low_complexity 1 33 0 237 288 48 64 chr13 90701683 90701808 -29043090 - L2 LINE L2 -1 3312 3190 1540 76 0 67 chr13 90702193 90702431 -29042467 + AluY SINE Alu 90 311 0 323 359 138 20 chr13 90702445 90702893 -29042005 - L2 LINE L2 -425 2889 2389 256 120 43 11 chr13 90702934 90703026 -29041872 + (TA)n Simple_repeat Simple_repeat 2 96 0 197 180 20 0 chr13 90703218 90703268 -29041630 + (ATG)n Simple_repeat Simple_repeat 1 51 0 680 208 40 6 chr13 90703345 90703518 -29041380 - L1PA16 LINE L1 -917 5229 5051 3550 194 63 24 chr13 90703525 90704404 -29040494 + L1PA16 LINE L1 5254 6166 0 21 0 0 0 chr13 90704505 90704526 -29040372 + AT_rich Low_complexity Low_complexity 1 21 0 1367 224 120 47 chr13 90705375 90705818 -29039080 + MER67D LTR ERV1 1 475 -39 225 161 105 14 chr13 90706521 90706664 -29038234 + (TA)n Simple_repeat Simple_repeat 1 156 0 * 325 241 41 12 chr13 90706598 90706768 -29038130 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 387 123 78 26 chr13 90706676 90706830 -29038068 + (TA)n Simple_repeat Simple_repeat 2 163 0 484 341 89 0 chr13 90706915 90707129 -29037769 - MIR SINE MIR -1 261 29 1794 153 0 38 chr13 90707180 90707493 -29037405 + AluSx SINE Alu 1 301 -11 1928 133 43 45 chr13 90707569 90707945 -29036953 + THE1C LTR MaLR 1 375 0 1166 308 122 7 chr13 90709590 90710311 -29034587 - L1ME3A LINE L1 -79 6091 5288 1680 144 163 0 chr13 90710541 90710854 -29034044 - THE1B LTR MaLR 0 364 1 2155 125 30 30 chr13 90711498 90711867 -29033031 + L1PB1 LINE L1 5782 6150 -1 356 130 0 52 chr13 90711872 90711987 -29032911 + (TCTCCC)n Simple_repeat Simple_repeat 2 110 0 9757 73 18 12 chr13 90711987 90713349 -29031549 + SVA Other Other 1 1369 -17 342 0 0 0 chr13 90713354 90713392 -29031506 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr13 90714206 90714227 -29030671 + AT_rich Low_complexity Low_complexity 1 21 0 1246 283 43 0 chr13 90714811 90715161 -29029737 - MLT1A1 LTR MaLR 0 365 1 3815 269 68 28 chr13 90715421 90716597 -29028301 + L1M3d LINE L1 34 1161 -4809 1307 204 0 72 chr13 90716597 90716926 -29027972 + AluSx SINE Alu 1 307 0 3815 269 68 28 chr13 90716926 90718588 -29026310 + L1M3d LINE L1 1161 2391 -3579 2561 42 0 3 chr13 90719229 90719536 -29025362 - AluY SINE Alu -5 306 1 264 59 0 0 chr13 90720371 90720405 -29024493 + (A)n Simple_repeat Simple_repeat 1 34 0 1634 160 29 104 chr13 90721056 90721431 -29023467 + MER7A DNA MER2_type 1 345 -1 857 293 136 49 chr13 90721432 90722119 -29022779 + L2 LINE L2 2570 3301 -12 1870 292 98 39 chr13 90724212 90725443 -29019455 + HAL1 LINE L1 587 1890 -617 184 324 28 0 chr13 90725889 90725960 -29018938 + MIR SINE MIR 106 178 -84 24 32 0 0 chr13 90725960 90725991 -29018907 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 90726011 90726032 -29018866 + AT_rich Low_complexity Low_complexity 1 21 0 187 301 226 23 chr13 90726962 90727095 -29017803 - MER5A DNA MER1_type 0 189 30 444 267 82 22 chr13 90727449 90727584 -29017314 - MIR SINE MIR -103 159 17 731 316 60 39 chr13 90728097 90728528 -29016370 + L3 LINE CR1 965 1404 -173 1298 238 37 37 chr13 90728811 90729185 -29015713 + MLT1A2 LTR MaLR 1 374 0 460 243 256 27 chr13 90729532 90729801 -29015097 + MLT1G3 LTR MaLR 1 293 -297 383 301 28 34 chr13 90731261 90731437 -29013461 - MER5B DNA MER1_type -1 177 3 1253 253 42 25 chr13 90732367 90732775 -29012123 - L1MB8 LINE L1 -6 6172 5758 320 192 90 0 chr13 90732981 90733059 -29011839 - L1MB8 LINE L1 -490 5676 5592 766 170 28 6 chr13 90733422 90733744 -29011154 + CT-rich Low_complexity Low_complexity 1 329 0 22 35 0 0 chr13 90734650 90734679 -29010219 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 90736492 90736522 -29008376 + AT_rich Low_complexity Low_complexity 1 30 0 362 268 65 26 chr13 90736543 90736696 -29008202 + L1ME3A LINE L1 4396 4554 -1592 1155 290 92 55 chr13 90736793 90737597 -29007301 + L1ME3A LINE L1 5337 6170 0 289 305 40 62 chr13 90737768 90737945 -29006953 - MIR SINE MIR -82 180 8 6977 62 1 1 chr13 90738007 90739754 -29005144 + L1PA7 LINE L1 4397 6150 -4 282 29 0 0 chr13 90740211 90740246 -29004652 + (CA)n Simple_repeat Simple_repeat 2 36 0 342 294 142 3 chr13 90740450 90740722 -29004176 + L1ME LINE L1 5355 5558 -604 180 231 19 39 chr13 90741285 90741337 -29003561 - L2 LINE L2 -2612 702 652 764 316 38 33 chr13 90741577 90741944 -29002954 + L2 LINE L2 2160 2528 -786 4291 194 25 13 chr13 90742313 90743164 -29001734 + L1M1 LINE L1 19 879 -6686 * 4720 139 22 22 chr13 90743161 90744532 -29000366 + L1MA1 LINE L1 4861 6285 -15 29 70 0 0 chr13 90744540 90744597 -29000301 + AT_rich Low_complexity Low_complexity 1 57 0 2029 118 0 13 chr13 90744851 90745157 -28999741 + AluSg SINE Alu 1 302 -8 23 54 0 0 chr13 90745425 90745462 -28999436 + AT_rich Low_complexity Low_complexity 1 37 0 5437 171 55 12 chr13 90745608 90746711 -28998187 + Tigger3b DNA MER2_type 80 1230 -1 262 111 0 0 chr13 90746768 90746804 -28998094 - Alu SINE Alu -252 48 13 2322 67 0 61 chr13 90746871 90747200 -28997698 + AluY SINE Alu 1 309 -2 4399 198 49 70 chr13 90747301 90747899 -28996999 + ERVL-C1 LTR ERVL 4574 5183 -581 2211 83 10 0 chr13 90747899 90748189 -28996709 + AluY SINE Alu 1 293 -18 4399 198 49 70 chr13 90748189 90748201 -28996697 + ERVL-C1 LTR ERVL 5183 5194 -570 1530 198 10 30 chr13 90748201 90748504 -28996394 + AluJo SINE Alu 3 299 -13 4399 198 49 70 chr13 90748504 90749100 -28995798 + ERVL-C1 LTR ERVL 5194 5756 -8 704 176 15 0 chr13 90749100 90749236 -28995662 + MLT2C1 LTR ERVL 1 138 -259 2933 174 20 29 chr13 90749245 90750339 -28994559 + L1MA8 LINE L1 4715 5789 -511 282 176 0 0 chr13 90750349 90750400 -28994498 - MLT2A2 LTR ERVL -326 127 77 426 155 33 39 chr13 90750419 90750600 -28994298 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 189 163 22 43 chr13 90750614 90750706 -28994192 + (TATATG)n Simple_repeat Simple_repeat 2 91 0 323 88 44 44 chr13 90750837 90750951 -28993947 + (TA)n Simple_repeat Simple_repeat 1 114 0 395 141 0 0 chr13 90750952 90751016 -28993882 + MLT2A2 LTR ERVL 388 451 -2 1227 230 22 36 chr13 90751017 90751379 -28993519 + L1MA8 LINE L1 5929 6156 -12 654 228 6 31 chr13 90751430 90751592 -28993306 + MLT2C2 LTR ERVL 140 297 -167 1832 178 56 42 chr13 90751634 90752060 -28992838 - Tigger2a DNA MER2_type 0 434 3 232 245 0 0 chr13 90752063 90752112 -28992786 + (CA)n Simple_repeat Simple_repeat 2 50 0 247 246 0 0 chr13 90752263 90752320 -28992578 + L1MC4 LINE L1 6652 6708 -1334 1569 268 48 24 chr13 90752483 90752938 -28991960 - MLT1D LTR MaLR -37 468 3 303 277 47 46 chr13 90753337 90753558 -28991340 + L1MDa LINE L1 1862 2089 -4451 348 349 76 22 chr13 90753845 90754161 -28990737 - L1ME LINE L1 -569 5593 5258 308 83 21 0 chr13 90754416 90754464 -28990434 + (TG)n Simple_repeat Simple_repeat 2 50 0 195 69 0 0 chr13 90754464 90754493 -28990405 + (TA)n Simple_repeat Simple_repeat 1 29 0 447 253 247 10 chr13 90754697 90754891 -28990007 + L2 LINE L2 2394 2633 -681 500 208 0 0 chr13 90754891 90754987 -28989911 + AluSg/x SINE Alu 187 282 -27 375 119 0 0 chr13 90754987 90755054 -28989844 + (CA)n Simple_repeat Simple_repeat 2 68 0 2786 138 21 0 chr13 90755054 90755533 -28989365 - L1P LINE L1 -2969 3177 2689 8932 103 1 8 chr13 90755534 90757669 -28987229 + L1PA8 LINE L1 4013 6158 -14 500 311 91 38 chr13 90757713 90758184 -28986714 + L2 LINE L2 2625 3121 -192 249 348 11 65 chr13 90758636 90758820 -28986078 + L2 LINE L2 3139 3312 -1 284 298 107 60 chr13 90759328 90759580 -28985318 + MLT1J LTR MaLR 9 272 -239 2288 99 0 10 chr13 90760139 90760473 -28984425 - AluSx SINE Alu 0 331 1 1824 170 131 16 chr13 90762142 90762524 -28982374 + MSTA LTR MaLR 1 426 -2 184 361 0 28 chr13 90762920 90762992 -28981906 + MIR SINE MIR 44 113 -95 1089 205 47 95 chr13 90763172 90763294 -28981604 - Charlie1 DNA MER1_type -2 2759 2633 2038 82 0 45 chr13 90763294 90763585 -28981313 + AluY SINE Alu 1 278 -33 225 0 0 0 chr13 90763587 90763612 -28981286 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1089 205 47 95 chr13 90763612 90763916 -28980982 - Charlie1 DNA MER1_type -129 2632 2351 234 248 119 91 chr13 90764272 90764482 -28980416 + MIR SINE MIR 46 261 -1 971 187 19 19 chr13 90765304 90765518 -28979380 + L1MA6 LINE L1 6083 6296 -4 26 30 0 0 chr13 90766939 90766972 -28977926 + AT_rich Low_complexity Low_complexity 1 33 0 1524 193 0 52 chr13 90768674 90769000 -28975898 + AluJb SINE Alu 3 311 -1 279 93 0 0 chr13 90769511 90769554 -28975344 + (TTG)n Simple_repeat Simple_repeat 2 44 0 1262 208 0 0 chr13 90769840 90770061 -28974837 + MER92B LTR ERV1 1 221 -415 310 306 54 54 chr13 90770557 90770871 -28974027 + L1MC4 LINE L1 7572 7885 -157 25 51 0 0 chr13 90771015 90771054 -28973844 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr13 90771374 90771419 -28973479 + AT_rich Low_complexity Low_complexity 1 45 0 309 118 0 0 chr13 90771427 90771478 -28973420 + (TG)n Simple_repeat Simple_repeat 2 52 0 364 282 10 0 chr13 90771481 90771584 -28973314 - L1ME LINE L1 -456 5665 5562 24 32 0 0 chr13 90772316 90772347 -28972551 + AT_rich Low_complexity Low_complexity 1 31 0 200 372 0 12 chr13 90773681 90773767 -28971131 + MIR SINE MIR 20 104 -104 31 26 0 0 chr13 90774499 90774537 -28970361 + AT_rich Low_complexity Low_complexity 1 38 0 302 360 50 21 chr13 90774977 90775216 -28969682 + L2 LINE L2 2214 2459 -855 341 340 44 19 chr13 90775220 90775379 -28969519 + L2 LINE L2 2564 2726 -588 358 300 45 55 chr13 90775379 90775579 -28969319 + MLT1J LTR MaLR 1 198 -313 244 190 63 13 chr13 90775750 90775829 -28969069 + L1MCa LINE L1 1982 2064 -4362 * 281 239 0 22 chr13 90775814 90775906 -28968992 - L1MC4 LINE L1 -1339 6703 6614 243 244 22 22 chr13 90775828 90775918 -28968980 + L1MC4 LINE L1 6614 6703 -1339 * 918 225 145 31 chr13 90775996 90776285 -28968613 + MLT1G1 LTR MaLR 1 322 -273 312 91 0 0 chr13 90776787 90776831 -28968067 + (CA)n Simple_repeat Simple_repeat 1 44 0 405 136 0 0 chr13 90776866 90776932 -28967966 + (TA)n Simple_repeat Simple_repeat 2 67 0 198 0 0 0 chr13 90776932 90776954 -28967944 + (GA)n Simple_repeat Simple_repeat 2 23 0 2044 89 7 0 chr13 90776969 90777239 -28967659 - AluSg SINE Alu -38 272 1 700 289 135 51 chr13 90777641 90778108 -28966790 + MLT1G1 LTR MaLR 75 580 -15 811 195 18 18 chr13 90778425 90778589 -28966309 - AluSc SINE Alu -23 286 123 263 181 0 64 chr13 90778614 90778708 -28966190 - L1MC4 LINE L1 -1340 6702 6615 300 294 0 22 chr13 90778711 90778803 -28966095 + L1MC4 LINE L1 6614 6703 -1339 300 307 23 0 chr13 90778751 90778839 -28966059 - L1MC4 LINE L1 -1339 6703 6614 * 335 311 0 0 chr13 90778807 90778897 -28966001 + L1MC4 LINE L1 6614 6703 -1339 * 345 300 0 0 chr13 90778845 90778935 -28965963 - L1MC4 LINE L1 -1339 6703 6614 253 289 0 0 chr13 90778953 90779043 -28965855 - L1MC4 LINE L1 -1339 6703 6614 204 179 0 0 chr13 90779043 90779082 -28965816 + (TA)n Simple_repeat Simple_repeat 2 40 0 304 333 0 0 chr13 90779083 90779173 -28965725 - L1MC4 LINE L1 -1339 6703 6614 * 312 296 23 0 chr13 90779117 90779205 -28965693 + L1MC4 LINE L1 6614 6703 -1339 273 300 0 0 chr13 90779211 90779301 -28965597 + L1MC4 LINE L1 6614 6703 -1339 248 214 0 82 chr13 90779213 90779311 -28965587 - L1MC4 LINE L1 -1339 6703 6614 * 205 216 0 0 chr13 90779311 90779348 -28965550 + (TA)n Simple_repeat Simple_repeat 1 37 0 728 187 0 0 chr13 90779348 90779471 -28965427 - FLAM_C SINE Alu -14 129 7 295 310 92 16 chr13 90779475 90779659 -28965239 + L2 LINE L2 3108 3305 -8 309 210 37 0 chr13 90779962 90780043 -28964855 + L1M4 LINE L1 4747 4830 -1316 365 291 137 33 chr13 90780408 90780590 -28964308 - MIR SINE MIR -5 257 57 273 169 0 0 chr13 90781849 90781908 -28962990 + CT-rich Low_complexity Low_complexity 3 61 0 27 73 0 0 chr13 90781988 90782043 -28962855 + AT_rich Low_complexity Low_complexity 1 55 0 36 77 0 0 chr13 90782214 90782292 -28962606 + AT_rich Low_complexity Low_complexity 1 78 0 242 29 29 0 chr13 90782457 90782492 -28962406 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4023 31 0 0 chr13 90782493 90782969 -28961929 - L1PA3 LINE L1 -3 6152 5677 455 191 0 11 chr13 90784109 90784198 -28960700 - L1P LINE L1 -2439 3707 3620 * 1630 254 24 2 chr13 90784188 90784648 -28960250 - L1P LINE L1 -2824 3322 2853 6209 183 30 9 chr13 90784657 90786886 -28958012 + L1PA15 LINE L1 3883 6163 -2 44 96 0 0 chr13 90787005 90787140 -28957758 + AT_rich Low_complexity Low_complexity 1 135 0 1493 218 39 0 chr13 90788012 90788319 -28956579 - MER2 DNA MER2_type -25 320 2 226 157 14 57 chr13 90789781 90789851 -28955047 - L1MC4 LINE L1 -1333 6709 6643 22 35 0 0 chr13 90789855 90789884 -28955014 + AT_rich Low_complexity Low_complexity 1 29 0 211 109 65 0 chr13 90789894 90789940 -28954958 + (TA)n Simple_repeat Simple_repeat 1 49 0 204 40 0 0 chr13 90790973 90790998 -28953900 + (TC)n Simple_repeat Simple_repeat 2 26 0 414 0 0 0 chr13 90791527 90791573 -28953325 + (TA)n Simple_repeat Simple_repeat 2 47 0 218 333 108 0 chr13 90791577 90791679 -28953219 - MIR3 SINE MIR -43 165 53 597 307 42 37 chr13 90791742 90791957 -28952941 + MIR SINE MIR 33 248 -14 32 43 0 0 chr13 90792096 90792142 -28952756 + AT_rich Low_complexity Low_complexity 1 46 0 1074 188 19 38 chr13 90792326 90792592 -28952306 - MER33 DNA MER1_type -63 261 1 428 285 41 81 chr13 90792632 90792853 -28952045 + MIR SINE MIR 9 220 -42 1528 223 14 19 chr13 90794675 90795039 -28949859 + MLT1A1 LTR MaLR 2 363 -2 2293 107 0 0 chr13 90795128 90795438 -28949460 - AluSg SINE Alu 0 310 1 28 61 0 0 chr13 90795578 90795627 -28949271 + AT_rich Low_complexity Low_complexity 1 49 0 460 322 50 15 chr13 90795627 90795826 -28949072 - MIR SINE MIR -56 206 1 343 291 35 0 chr13 90795918 90796004 -28948894 - MIR SINE MIR -94 168 80 259 305 50 101 chr13 90796072 90796429 -28948469 - L2 LINE L2 0 3313 2975 265 86 0 0 chr13 90796658 90796693 -28948205 - MSTD LTR MaLR -361 35 1 1338 233 89 27 chr13 90797007 90797376 -28947522 - MSTD LTR MaLR -4 392 1 2558 115 0 0 chr13 90797505 90797869 -28947029 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr13 90798074 90798095 -28946803 + AT_rich Low_complexity Low_complexity 1 21 0 39 60 0 0 chr13 90798802 90798869 -28946029 + AT_rich Low_complexity Low_complexity 1 67 0 2417 52 0 23 chr13 90799167 90799476 -28945422 + AluY SINE Alu 1 302 -9 180 273 0 0 chr13 90799696 90799740 -28945158 - L2 LINE L2 -213 3059 3016 195 336 45 73 chr13 90801665 90801775 -28943123 - MIR3 SINE MIR -87 121 15 321 315 93 0 chr13 90801832 90801940 -28942958 + MIR3 SINE MIR 40 157 -51 286 258 22 0 chr13 90802028 90802117 -28942781 + L1MC5 LINE L1 7327 7417 -544 235 256 13 0 chr13 90802164 90802242 -28942656 - L1MC4 LINE L1 -1324 6718 6640 229 301 24 0 chr13 90802226 90802309 -28942589 + L1MC4 LINE L1 6614 6698 -1344 * 349 248 62 25 chr13 90802391 90802552 -28942346 + L1MC5 LINE L1 7603 7769 -192 2071 214 18 20 chr13 90802555 90803054 -28941844 - L1PA16 LINE L1 -20 6146 5649 22 0 0 0 chr13 90803965 90803987 -28940911 + AT_rich Low_complexity Low_complexity 1 22 0 1772 142 54 3 chr13 90804018 90804334 -28940564 + L1PA16 LINE L1 5826 6157 -9 4961 168 31 23 chr13 90805958 90807073 -28937825 - L1MA8 LINE L1 -3 6288 5165 220 190 35 0 chr13 90808192 90808250 -28936648 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 340 158 16 74 chr13 90808260 90808450 -28936448 + (TA)n Simple_repeat Simple_repeat 2 180 0 181 57 57 0 chr13 90808883 90808918 -28935980 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 883 110 0 21 chr13 90809087 90809237 -28935661 - L1PA8A LINE L1 -642 5489 5346 4040 78 2 0 chr13 90809237 90809777 -28935121 + L1PA7 LINE L1 5613 6154 0 883 110 0 21 chr13 90809777 90809792 -28935106 - L1PA8A LINE L1 -785 5346 5332 462 331 78 8 chr13 90810347 90810592 -28934306 - MIR SINE MIR 0 262 1 2188 108 3 0 chr13 90863318 90863613 -28881285 - AluSg SINE Alu -14 296 1 261 57 0 0 chr13 90865008 90865043 -28879855 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 68 0 0 chr13 90866164 90866208 -28878690 + AT_rich Low_complexity Low_complexity 1 44 0 1215 47 0 0 chr13 90866622 90866771 -28878127 + AluY SINE Alu 159 307 -4 222 167 0 0 chr13 90867194 90867254 -28877644 + T-rich Low_complexity Low_complexity 1 60 0 11382 32 0 1 chr13 90867255 90869384 -28875514 - L1PA3 LINE L1 -3 6152 4021 23 33 0 0 chr13 90869448 90869478 -28875420 + AT_rich Low_complexity Low_complexity 1 30 0 212 254 0 18 chr13 90869717 90869772 -28875126 + CT-rich Low_complexity Low_complexity 1 54 0 25 31 0 0 chr13 90870613 90870645 -28874253 + AT_rich Low_complexity Low_complexity 1 32 0 230 305 124 9 chr13 90871306 90871411 -28873487 - MIR SINE MIR -114 148 32 312 286 12 0 chr13 90872109 90872193 -28872705 + L2 LINE L2 3229 3313 0 182 374 78 30 chr13 90873940 90874336 -28870562 + L2 LINE L2 1609 2023 -1291 4554 199 19 16 chr13 90874767 90875994 -28868904 - L1MB3 LINE L1 0 6183 4948 225 243 28 0 chr13 90877928 90878035 -28866863 + CT-rich Low_complexity Low_complexity 3 112 0 371 227 20 13 chr13 90878053 90878203 -28866695 + CT-rich Low_complexity Low_complexity 2 152 0 22 0 0 0 chr13 90878386 90878408 -28866490 + AT_rich Low_complexity Low_complexity 1 22 0 183 309 155 31 chr13 90878572 90878669 -28866229 + L2 LINE L2 3143 3251 -21 180 279 23 0 chr13 90878795 90878838 -28866060 - MIR SINE MIR -167 95 52 725 267 43 29 chr13 90879076 90879286 -28865612 - MER76 LTR ERV -438 250 38 23 68 0 0 chr13 90880472 90880516 -28864382 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr13 90881305 90881327 -28863571 + AT_rich Low_complexity Low_complexity 1 22 0 1337 162 43 47 chr13 90882228 90882333 -28862565 + MER73 LTR ERVL 368 472 -172 2041 142 84 102 chr13 90882333 90882855 -28862043 - LTR64 LTR ERVK 0 513 1 1337 162 43 47 chr13 90882855 90883027 -28861871 + MER73 LTR ERVL 472 644 0 22 70 0 0 chr13 90883848 90883891 -28861007 + AT_rich Low_complexity Low_complexity 1 43 0 2773 3 0 0 chr13 90884048 90884350 -28860548 + AluYa5 SINE Alu 1 302 -9 21 71 0 0 chr13 90885252 90885294 -28859604 + AT_rich Low_complexity Low_complexity 1 42 0 32 26 0 0 chr13 90885426 90885465 -28859433 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr13 90885992 90886015 -28858883 + AT_rich Low_complexity Low_complexity 1 23 0 387 0 0 0 chr13 90888098 90888141 -28856757 + (TC)n Simple_repeat Simple_repeat 2 44 0 279 0 0 0 chr13 90888140 90888171 -28856727 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 24 53 0 0 chr13 90888967 90889005 -28855893 + AT_rich Low_complexity Low_complexity 1 38 0 619 343 26 22 chr13 90889477 90889745 -28855153 + ERVL LTR ERVL 1679 1947 -3049 1806 325 70 45 chr13 90889845 90891260 -28853638 + ERVL LTR ERVL 2092 3582 -1903 916 94 8 0 chr13 90891285 90891413 -28853485 - AluSc SINE Alu -180 129 1 1370 318 75 70 chr13 90891413 90892863 -28852035 + ERVL LTR ERVL 3256 5105 -659 490 297 7 0 chr13 90893250 90893388 -28851510 + LTR16A1 LTR ERVL 1 139 -318 520 252 55 76 chr13 90893579 90893817 -28851081 + LTR16A1 LTR ERVL 224 456 -1 208 197 14 28 chr13 90894063 90894134 -28850764 + CT-rich Low_complexity Low_complexity 2 71 0 495 96 149 21 chr13 90894196 90894290 -28850608 + LTR54 LTR ERV1 1 106 -404 552 222 24 16 chr13 90896580 90896706 -28848192 + MER94 DNA DNA 1 127 -7 296 225 50 50 chr13 90898039 90898119 -28846779 + MLT1I LTR MaLR 98 177 -232 210 150 0 0 chr13 90899436 90899476 -28845422 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 848 211 31 0 chr13 90899482 90899643 -28845255 - Tigger3(Golem) DNA MER2_type 0 3038 2873 242 29 29 0 chr13 90900155 90900190 -28844708 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 459 134 55 18 chr13 90900704 90900868 -28844030 + (TA)n Simple_repeat Simple_repeat 1 170 0 354 164 0 86 chr13 90900873 90901025 -28843873 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 268 176 29 0 chr13 90901233 90901301 -28843597 + (TA)n Simple_repeat Simple_repeat 1 70 0 303 28 0 0 chr13 90902011 90902047 -28842851 + (TC)n Simple_repeat Simple_repeat 2 37 0 208 367 120 13 chr13 90902261 90902419 -28842479 + L2 LINE L2 2892 3066 -206 469 312 42 30 chr13 90903670 90904003 -28840895 + L1ME4a LINE L1 5519 5855 -266 48 18 0 0 chr13 90905675 90905730 -28839168 + AT_rich Low_complexity Low_complexity 1 55 0 225 188 31 16 chr13 90905774 90905838 -28839060 + (TA)n Simple_repeat Simple_repeat 1 65 0 1986 226 37 33 chr13 90905880 90906488 -28838410 - LTR27 LTR ERV1 -141 495 1 753 244 61 166 chr13 90907141 90907973 -28836925 + LTR41 LTR ERVL 2 746 -27 510 308 190 11 chr13 90908184 90908463 -28836435 + L3 LINE CR1 1140 1468 -109 28 29 0 0 chr13 90908492 90908527 -28836371 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr13 90909277 90909304 -28835594 + AT_rich Low_complexity Low_complexity 1 27 0 189 375 0 0 chr13 90909490 90909554 -28835344 - L2 LINE L2 -10 3262 3199 270 284 55 75 chr13 90910287 90910366 -28834532 - LTR33 LTR ERVL -320 201 122 1476 233 28 3 chr13 90910366 90910722 -28834176 + MLT1A1 LTR MaLR 1 365 0 270 284 55 75 chr13 90910722 90910843 -28834055 - LTR33 LTR ERVL -399 122 5 244 339 47 39 chr13 90910938 90911065 -28833833 - L2 LINE L2 -534 2780 2653 1907 161 0 0 chr13 90911192 90911522 -28833376 + AluSx SINE Alu 1 312 0 260 330 168 20 chr13 90911665 90911862 -28833036 - L2 LINE L2 -943 2371 2146 1592 262 55 57 chr13 90911900 90912755 -28832143 + L1ME2 LINE L1 4151 5003 -1143 252 0 0 0 chr13 90912805 90912833 -28832065 + (A)n Simple_repeat Simple_repeat 1 28 0 1561 258 44 32 chr13 90912942 90913508 -28831390 + L1ME2 LINE L1 5331 5903 -261 431 314 46 0 chr13 90913511 90913664 -28831234 + L1ME2 LINE L1 6003 6162 -2 1908 169 0 3 chr13 90913991 90914298 -28830600 + AluJb SINE Alu 3 308 -4 21 36 0 0 chr13 90914439 90914467 -28830431 + AT_rich Low_complexity Low_complexity 1 28 0 1507 246 71 42 chr13 90914959 90915463 -28829435 + MLT2B1 LTR ERVL 2 520 0 230 333 20 46 chr13 90916053 90916206 -28828692 - L1ME3A LINE L1 -208 5962 5814 490 351 28 0 chr13 90916812 90917023 -28827875 - MIR SINE MIR 0 262 46 4578 49 2 9 chr13 90917544 90918119 -28826779 + L1PA7 LINE L1 5461 6031 -123 296 29 0 0 chr13 90919281 90919316 -28825582 + MADE1 DNA Mariner 46 80 0 225 132 75 0 chr13 90919322 90919375 -28825523 + (TA)n Simple_repeat Simple_repeat 2 58 0 1496 158 37 29 chr13 90920547 90920820 -28824078 + AluSq SINE Alu 10 284 -29 378 346 177 52 chr13 90921006 90922190 -28822708 - L2 LINE L2 -343 2971 1640 589 303 133 0 chr13 90922326 90922537 -28822361 - MIR SINE MIR -19 243 5 438 310 103 10 chr13 90923238 90923441 -28821457 + MIR SINE MIR 26 247 -15 322 237 55 53 chr13 90923577 90923729 -28821169 + MIR SINE MIR 69 221 -41 1745 129 96 0 chr13 90924008 90924279 -28820619 - AluSx SINE Alu -15 297 1 328 180 21 21 chr13 90924436 90924635 -28820263 + (TA)n Simple_repeat Simple_repeat 1 199 0 28 29 0 0 chr13 90924802 90924837 -28820061 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr13 90925790 90925826 -28819072 + AT_rich Low_complexity Low_complexity 1 36 0 249 344 24 24 chr13 90925912 90926037 -28818861 + L2 LINE L2 3188 3312 -1 31 0 0 0 chr13 90926164 90926195 -28818703 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr13 90926435 90926456 -28818442 + (T)n Simple_repeat Simple_repeat 1 21 0 194 260 20 20 chr13 90926772 90926822 -28818076 + L3 LINE CR1 1527 1576 -1 470 325 46 30 chr13 90926929 90927166 -28817732 + MLT1I LTR MaLR 96 336 -73 1309 204 71 4 chr13 90927729 90928009 -28816889 - AluJo SINE Alu -1 311 13 1788 263 71 4 chr13 90928271 90928833 -28816065 - L1MC4 LINE L1 -216 7826 7227 355 195 0 0 chr13 90928835 90928912 -28815986 - L1MC4 LINE L1 -966 7076 7000 25 31 0 0 chr13 90929504 90929536 -28815362 + AT_rich Low_complexity Low_complexity 1 32 0 498 290 0 0 chr13 90930024 90930155 -28814743 - MIR SINE MIR -34 228 98 246 287 115 25 chr13 90930356 90930478 -28814420 - MIR SINE MIR -10 252 120 217 306 61 10 chr13 90930625 90930723 -28814175 - MIR SINE MIR -111 151 49 3450 186 15 11 chr13 90931598 90932248 -28812650 + Tigger1 DNA MER2_type 1 653 -1765 573 216 58 0 chr13 90932249 90932426 -28812472 - L1 LINE L1 -1055 5091 4903 1346 207 7 0 chr13 90932499 90932789 -28812109 - L1 LINE L1 -1213 4933 4642 1548 209 17 15 chr13 90932928 90933330 -28811568 - L1 LINE L1 -1501 4645 4243 2561 164 46 8 chr13 90933330 90933796 -28811102 + L1PB4 LINE L1 5660 6153 -3 9840 152 27 17 chr13 90933815 90935215 -28809683 + Tigger1 DNA MER2_type 640 2063 -355 2327 60 0 0 chr13 90935215 90935552 -28809346 - AluY SINE Alu 0 337 1 9840 152 27 17 chr13 90935552 90935911 -28808987 + Tigger1 DNA MER2_type 2063 2417 -1 338 312 110 48 chr13 90936164 90936520 -28808378 - L1ME LINE L1 -520 5642 5265 768 282 50 62 chr13 90937074 90937496 -28807402 - L1MC5 LINE L1 -741 8015 7599 299 44 22 0 chr13 90937496 90937541 -28807357 + (CA)n Simple_repeat Simple_repeat 1 46 0 768 282 50 62 chr13 90937541 90937653 -28807245 - L1MC5 LINE L1 -1157 7599 7487 23 33 0 0 chr13 90938533 90938563 -28806335 + AT_rich Low_complexity Low_complexity 1 30 0 182 313 14 88 chr13 90941438 90941585 -28803313 - MER5A DNA MER1_type -19 170 35 25 0 0 0 chr13 90941634 90941659 -28803239 + AT_rich Low_complexity Low_complexity 1 25 0 706 266 24 69 chr13 90941691 90942026 -28802872 - L1ME1 LINE L1 -91 6075 5756 456 243 0 0 chr13 90942146 90942257 -28802641 - L1MA10 LINE L1 -5 6329 6219 1419 208 33 141 chr13 90942272 90943015 -28801883 - L1MC5 LINE L1 -743 6198 6163 1792 105 95 11 chr13 90943015 90943300 -28801598 + AluSg SINE Alu 1 309 -1 1419 208 33 141 chr13 90943300 90943799 -28801099 - L1MC5 LINE L1 -778 6163 5612 249 327 28 0 chr13 90943792 90943899 -28800999 - L1MC5 LINE L1 -2995 3946 3837 * 237 254 0 0 chr13 90943919 90943978 -28800920 + (TA)n Simple_repeat Simple_repeat 2 60 0 1274 292 80 35 chr13 90943999 90945242 -28799656 - L1MC5 LINE L1 -3124 3817 2530 1952 131 3 3 chr13 90945242 90945533 -28799365 + AluSx SINE Alu 3 293 -19 1274 292 80 35 chr13 90945533 90945942 -28798956 - L1MC5 LINE L1 -4411 2530 2141 1068 295 103 76 chr13 90946061 90947398 -28797500 - L1MC5 LINE L1 -4887 1536 164 198 0 0 0 chr13 90947513 90947535 -28797363 + (TA)n Simple_repeat Simple_repeat 2 23 0 405 0 0 0 chr13 90948142 90948187 -28796711 + (CA)n Simple_repeat Simple_repeat 2 46 0 956 9 0 0 chr13 90948327 90948437 -28796461 - L1PA3 LINE L1 -595 5560 5451 5201 21 7 8 chr13 90948437 90949048 -28795850 + L1PA3 LINE L1 5539 6155 0 447 337 62 0 chr13 90949302 90949480 -28795418 - MIR SINE MIR 0 262 74 575 287 147 0 chr13 90949531 90949688 -28795210 - MER5A DNA MER1_type 0 189 10 242 299 67 10 chr13 90949980 90950128 -28794770 + L1ME LINE L1 5666 5821 -341 1908 159 3 3 chr13 90950171 90950479 -28794419 + AluSx SINE Alu 5 312 0 703 179 19 6 chr13 90950718 90950880 -28794018 - L1MB2 LINE L1 -1 6170 6007 22 56 0 0 chr13 90952040 90952076 -28792822 + AT_rich Low_complexity Low_complexity 1 36 0 455 124 0 0 chr13 90952271 90952360 -28792538 + AluSc SINE Alu 221 309 0 436 303 80 6 chr13 90952459 90952634 -28792264 + MER5A DNA MER1_type 2 189 0 261 287 238 0 chr13 90953905 90954048 -28790850 + MER5A DNA MER1_type 11 187 -2 2194 125 46 14 chr13 90954166 90954517 -28790381 - THE1B LTR MaLR 0 364 3 9011 101 97 36 chr13 90954521 90956005 -28788893 - THE1B-int LTR MaLR -6 1574 1 1462 117 48 17 chr13 90956005 90956236 -28788662 - THE1B LTR MaLR 0 364 127 224 221 54 148 chr13 90956695 90956844 -28788054 - MIR SINE MIR -60 202 68 21 0 0 0 chr13 90957718 90957739 -28787159 + AT_rich Low_complexity Low_complexity 1 21 0 2169 108 0 13 chr13 90957925 90958239 -28786659 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr13 90958905 90958930 -28785968 + AT_rich Low_complexity Low_complexity 1 25 0 638 334 52 6 chr13 90959585 90959911 -28784987 + LTR16B LTR ERVL 124 464 0 373 332 59 44 chr13 90960295 90960635 -28784263 - HAL1 LINE L1 -768 1739 1395 402 230 237 15 chr13 90962625 90962760 -28782138 + MER5A DNA MER1_type 25 189 0 294 29 0 0 chr13 90963395 90963430 -28781468 + (TG)n Simple_repeat Simple_repeat 1 35 0 589 215 194 51 chr13 90965572 90965857 -28779041 + MER57A LTR ERV1 102 403 0 198 171 0 0 chr13 90965879 90965920 -28778978 + A-rich Low_complexity Low_complexity 5 45 0 234 0 0 0 chr13 90966245 90966271 -28778627 + (T)n Simple_repeat Simple_repeat 1 26 0 435 257 125 60 chr13 90966751 90966956 -28777942 + MIR SINE MIR 36 249 -13 1982 128 3 0 chr13 90968644 90968933 -28775965 - AluSq SINE Alu -23 290 1 30 27 0 0 chr13 90970959 90970996 -28773902 + AT_rich Low_complexity Low_complexity 1 37 0 183 378 0 12 chr13 90971438 90971520 -28773378 + MIR SINE MIR 34 114 -148 207 344 169 26 chr13 90971577 90971731 -28773167 + MIR SINE MIR 31 206 -56 225 310 17 103 chr13 90971988 90972162 -28772736 + MIR3 SINE MIR 37 195 -13 21 36 0 0 chr13 90972610 90972638 -28772260 + AT_rich Low_complexity Low_complexity 1 28 0 39 22 0 0 chr13 90973252 90973298 -28771600 + AT_rich Low_complexity Low_complexity 1 46 0 294 281 22 11 chr13 90973746 90973835 -28771063 - MIR SINE MIR -56 206 117 1948 122 37 0 chr13 90974077 90974379 -28770519 + AluSx SINE Alu 7 318 0 6805 68 23 8 chr13 90974398 90975520 -28769378 - L1PA8 LINE L1 -3 6169 5048 24 53 0 0 chr13 90975546 90975584 -28769314 + AT_rich Low_complexity Low_complexity 1 38 0 3592 223 32 27 chr13 90975638 90976635 -28768263 + L1MA9 LINE L1 5272 6273 -39 23 0 0 0 chr13 90976664 90976687 -28768211 + AT_rich Low_complexity Low_complexity 1 23 0 3237 201 44 38 chr13 90976819 90977640 -28767258 - LTR1B LTR ERV1 0 826 1 25 31 0 0 chr13 90978617 90978649 -28766249 + AT_rich Low_complexity Low_complexity 1 32 0 264 170 0 0 chr13 90978736 90978789 -28766109 + (TA)n Simple_repeat Simple_repeat 1 53 0 444 262 55 21 chr13 90979454 90979599 -28765299 - MLT1H LTR MaLR -19 530 381 1326 229 48 88 chr13 90980129 90980583 -28764315 - MLT1C LTR MaLR 0 467 32 21 0 0 0 chr13 90981207 90981228 -28763670 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 90982155 90982177 -28762721 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 90982762 90982787 -28762111 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr13 90983591 90983616 -28761282 + AT_rich Low_complexity Low_complexity 1 25 0 184 375 80 9 chr13 90983641 90983753 -28761145 - L2 LINE L2 -12 3260 3141 2420 25 0 0 chr13 90985285 90985571 -28759327 + L1PA2 LINE L1 5870 6155 0 286 329 117 15 chr13 90986078 90986215 -28758683 + L2 LINE L2 2914 3064 -208 2293 149 15 66 chr13 90986264 90986360 -28758538 - Tigger2a DNA MER2_type -2274 434 335 2137 121 0 10 chr13 90986360 90986673 -28758225 + AluSg SINE Alu 1 310 0 2293 149 15 66 chr13 90986673 90987033 -28757865 - Tigger2a DNA MER2_type -2373 335 1 200 239 0 22 chr13 90987040 90987086 -28757812 + L2 LINE L2 3180 3224 -89 22 56 0 0 chr13 90988380 90988416 -28756482 + AT_rich Low_complexity Low_complexity 1 36 0 263 33 0 0 chr13 90988491 90988521 -28756377 + U6 snRNA snRNA 1 30 -77 1525 208 13 3 chr13 90988974 90989272 -28755626 - MER74C LTR ERVL 0 460 160 585 209 17 0 chr13 90989406 90989521 -28755377 - MER74C LTR ERVL -304 156 40 249 108 0 0 chr13 90990333 90990370 -28754528 + (TA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr13 90991544 90991567 -28753331 + AT_rich Low_complexity Low_complexity 1 23 0 317 314 7 57 chr13 90992243 90992383 -28752515 - L2 LINE L2 -2 3311 3179 22 0 0 0 chr13 90992910 90992932 -28751966 + AT_rich Low_complexity Low_complexity 1 22 0 188 365 55 14 chr13 90993230 90993375 -28751523 + MIR SINE MIR 93 243 -19 439 224 15 67 chr13 90993514 90993648 -28751250 - HUERS-P2 LTR ERV1 -2961 127 1 3497 138 51 68 chr13 90993648 90994446 -28750452 - LTR1 LTR ERV1 0 785 1 545 291 12 35 chr13 90994824 90994996 -28749902 - MER63B DNA MER1_type -268 168 1 198 0 0 0 chr13 90995347 90995369 -28749529 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4407 179 14 66 chr13 90996318 90997300 -28747598 + L1MCa LINE L1 23 953 -5473 2738 212 38 38 chr13 90997300 90997477 -28747421 + MER73 LTR ERVL 12 188 -456 189 0 0 0 chr13 90997477 90997498 -28747400 + (TA)n Simple_repeat Simple_repeat 1 21 0 2738 212 38 38 chr13 90997498 90997951 -28746947 + MER73 LTR ERVL 187 642 -2 2899 176 41 28 chr13 90997954 90998725 -28746173 + L1MCa LINE L1 950 1819 -4607 1957 263 65 1 chr13 90998716 90999377 -28745521 + L1M4 LINE L1 3141 3843 -2303 * 350 127 0 0 chr13 90999444 90999499 -28745399 + L1MA7 LINE L1 6187 6241 -50 3078 163 12 62 chr13 90999502 91000182 -28744716 + L1PB4 LINE L1 5506 6151 -5 30 0 0 0 chr13 91001216 91001246 -28743652 + AT_rich Low_complexity Low_complexity 1 30 0 222 118 0 0 chr13 91001355 91001389 -28743509 + (TA)n Simple_repeat Simple_repeat 2 35 0 256 113 38 0 chr13 91001440 91001493 -28743405 + L1MA7 LINE L1 6231 6285 -6 757 248 43 0 chr13 91001503 91001733 -28743165 + L1M4 LINE L1 3839 4078 -2068 350 157 15 23 chr13 91001813 91001909 -28742989 + Alu SINE Alu 1 53 -249 2821 204 153 35 chr13 91002415 91003418 -28741480 + Charlie1 DNA MER1_type 1641 2761 0 683 256 33 60 chr13 91003444 91003659 -28741239 - MER58A DNA MER1_type -15 209 1 1184 299 94 29 chr13 91004595 91005140 -28739758 + L2 LINE L2 1791 2370 -944 217 311 96 40 chr13 91006129 91006306 -28738592 + MIR SINE MIR 73 259 -3 227 254 55 0 chr13 91007224 91007279 -28737619 + MIR3 SINE MIR 123 180 -28 1678 148 81 0 chr13 91008411 91008682 -28736216 + AluSx SINE Alu 1 293 -19 185 267 22 0 chr13 91008792 91008837 -28736061 + L2 LINE L2 3262 3307 -6 212 289 33 111 chr13 91008861 91009041 -28735857 - MIR SINE MIR -77 185 20 2614 62 0 6 chr13 91009288 91009628 -28735270 - L1PA7 LINE L1 -1 6153 5816 1540 51 5 0 chr13 91009628 91009823 -28735075 + L1PA7 LINE L1 5620 5815 -339 22 0 0 0 chr13 91011107 91011129 -28733769 + AT_rich Low_complexity Low_complexity 1 22 0 321 48 16 48 chr13 91012026 91012088 -28732810 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 215 254 32 16 chr13 91012235 91012298 -28732600 - MIR SINE MIR -111 151 88 32 0 0 0 chr13 91012413 91012445 -28732453 + AT_rich Low_complexity Low_complexity 1 32 0 294 286 88 7 chr13 91012962 91013109 -28731789 + MIR SINE MIR 94 252 -10 231 273 30 0 chr13 91014338 91014404 -28730494 - L1MC4 LINE L1 -1361 6681 6614 2220 117 0 57 chr13 91014453 91014837 -28730061 - L1PB1 LINE L1 -5 6146 5785 751 174 0 7 chr13 91014880 91015018 -28729880 - L1PB1 LINE L1 -360 5791 5655 1466 224 76 72 chr13 91015032 91015492 -28729406 - MLT2B1 LTR ERVL -58 462 1 238 184 105 26 chr13 91016298 91016374 -28728524 + LTR50 LTR ERVL 712 793 -2 195 222 22 22 chr13 91016387 91016432 -28728466 + L2 LINE L2 3216 3260 -12 21 36 0 0 chr13 91016738 91016766 -28728132 + AT_rich Low_complexity Low_complexity 1 28 0 265 194 32 11 chr13 91016804 91016897 -28728001 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 23 33 0 0 chr13 91017858 91017888 -28727010 + AT_rich Low_complexity Low_complexity 1 30 0 783 285 221 24 chr13 91018140 91018371 -28726527 - L2 LINE L2 0 3313 3129 195 69 0 0 chr13 91018371 91018400 -28726498 + (TG)n Simple_repeat Simple_repeat 1 29 0 783 285 221 24 chr13 91018400 91018884 -28726014 - L2 LINE L2 -184 3129 2463 495 271 37 65 chr13 91018917 91019131 -28725767 - MIR SINE MIR -41 221 14 252 311 192 31 chr13 91019153 91019413 -28725485 - L2 LINE L2 -853 2461 2160 21 0 0 0 chr13 91019518 91019539 -28725359 + AT_rich Low_complexity Low_complexity 1 21 0 651 311 37 8 chr13 91020024 91020265 -28724633 - MIR SINE MIR -5 257 10 406 254 89 84 chr13 91020734 91020887 -28724011 - MER58C DNA MER1_type -2206 214 58 2273 113 0 0 chr13 91020887 91021188 -28723710 + AluSx SINE Alu 5 305 -7 406 254 89 84 chr13 91021188 91021247 -28723651 - MER58C DNA MER1_type -2362 58 1 587 293 65 55 chr13 91021327 91021634 -28723264 - L2 LINE L2 0 3313 3004 354 318 171 38 chr13 91021808 91022047 -28722851 - L2 LINE L2 -374 2940 2670 185 290 47 103 chr13 91022544 91022758 -28722140 + L2 LINE L2 2622 2823 -491 181 379 32 0 chr13 91022767 91022862 -28722036 + L2 LINE L2 2971 3068 -245 505 287 26 57 chr13 91023827 91024057 -28720841 - MIR SINE MIR -20 242 20 417 80 80 7 chr13 91024495 91024632 -28720266 + (TA)n Simple_repeat Simple_repeat 2 148 0 1919 141 3 3 chr13 91024632 91024916 -28719982 - AluSg SINE Alu -26 284 1 21 0 0 0 chr13 91024918 91024939 -28719959 + AT_rich Low_complexity Low_complexity 1 21 0 460 297 36 14 chr13 91125587 91125806 -28619092 + L1MC/D LINE L1 5443 5666 -678 676 309 57 55 chr13 91126559 91126999 -28617899 - L1MCa LINE L1 -5969 457 17 244 233 41 0 chr13 91127172 91127245 -28617653 - L1MA2 LINE L1 -244 6060 5985 759 161 72 28 chr13 91127245 91127425 -28617473 + LTR56 LTR ERV1 257 444 -1 1806 160 60 20 chr13 91128876 91129226 -28615672 - THE1B LTR MaLR 0 364 1 9299 164 10 8 chr13 91129226 91130802 -28614096 - THE1B-int LTR MaLR 0 1580 1 1488 208 57 20 chr13 91130802 91131153 -28613745 - THE1B LTR MaLR 0 364 1 192 353 90 6 chr13 91132073 91132184 -28612714 - MER5B DNA MER1_type -1 177 48 192 40 0 0 chr13 91132184 91132209 -28612689 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 192 353 90 6 chr13 91132209 91132253 -28612645 - MER5B DNA MER1_type -130 48 9 4268 115 138 49 chr13 91132960 91133718 -28611180 + LTR12 LTR ERV1 1 826 0 20256 131 13 11 chr13 91133720 91137042 -28607856 + HERV9 LTR ERV1 3 3330 -5069 5345 111 4 1 chr13 91137039 91137843 -28607055 + HERV9 LTR ERV1 7592 8397 -2 * 3237 113 330 0 chr13 91137846 91138467 -28606431 + LTR12 LTR ERV1 1 826 0 235 294 69 61 chr13 91138663 91138894 -28606004 - AluYa5 SINE Alu 0 301 69 8597 236 58 6 chr13 91139132 91141392 -28603506 - L1M1 LINE L1 -4467 3098 721 9703 187 32 24 chr13 91141417 91146431 -28598467 - L1PA8A LINE L1 -9 6437 1187 5762 193 34 8 chr13 91146433 91146480 -28598418 - L1PA8A LINE L1 -4734 1141 1097 2035 138 3 0 chr13 91146480 91146769 -28598129 + AluSc SINE Alu 1 290 -19 5762 193 34 8 chr13 91146769 91147833 -28597065 - L1PA8A LINE L1 -4778 1097 1 1522 261 30 100 chr13 91147833 91148474 -28596424 - L1M1 LINE L1 -6831 734 139 629 212 35 44 chr13 91148536 91148739 -28596159 + L1PA12 LINE L1 167 367 -7214 308 367 58 19 chr13 91148790 91149049 -28595849 + L1PA12 LINE L1 1664 1932 -5066 19483 144 16 21 chr13 91149090 91153291 -28591607 + L1P3 LINE L1 367 4577 -1884 1843 131 0 50 chr13 91153299 91153654 -28591244 - AluY SINE Alu 0 340 1 727 214 30 4 chr13 91153685 91153919 -28590979 - L1 LINE L1 -1611 5954 5715 590 269 22 0 chr13 91153923 91154105 -28590793 - L1 LINE L1 -1975 5590 5405 13224 174 7 12 chr13 91154211 91156939 -28587959 + L1PA8A LINE L1 2092 4806 -1340 5659 111 9 1 chr13 91156945 91157917 -28586981 + L1PA8A LINE L1 5143 6127 -4 2254 321 26 5 chr13 91157931 91159143 -28585755 - L1 LINE L1 -5292 2273 361 1211 228 49 15 chr13 91159143 91159467 -28585431 + MER21B LTR ERV1 63 397 -466 1764 198 34 86 chr13 91159507 91160097 -28584801 + LTR25 LTR ERV1 236 794 0 385 296 50 25 chr13 91160157 91160316 -28584582 - L1M2 LINE L1 -4242 2607 2445 40 21 0 0 chr13 91160402 91160449 -28584449 + AT_rich Low_complexity Low_complexity 1 47 0 275 203 43 14 chr13 91160624 91160693 -28584205 - MER51D LTR ERV1 -85 572 502 259 333 10 0 chr13 91162934 91163030 -28581868 + MIR SINE MIR 106 202 -60 2795 196 17 31 chr13 91163278 91163920 -28580978 - MER51A LTR ERV1 -1 633 1 1251 225 22 4 chr13 91163921 91164192 -28580706 - MER51A-int LTR ERV1 0 7816 7541 300 317 35 7 chr13 91164357 91164499 -28580399 - HERV17 LTR ERV1 -446 8180 8035 703 180 82 5 chr13 91164792 91164986 -28579912 - HERV17 LTR ERV1 -2416 3530 3322 1634 183 24 17 chr13 91165000 91165415 -28579483 - HERV17 LTR ERV1 -6081 2039 1622 1296 268 57 9 chr13 91166079 91166608 -28578290 - L1MB3 LINE L1 -152 6031 5478 25 31 0 0 chr13 91166647 91166679 -28578219 + AT_rich Low_complexity Low_complexity 1 32 0 367 207 0 0 chr13 91166747 91166829 -28578069 - L1MB3 LINE L1 -37 6146 6065 1336 224 4 0 chr13 91167562 91167807 -28577091 + AluSx SINE Alu 29 274 -38 954 315 20 6 chr13 91167980 91168336 -28576562 - MER89 LTR ERV1 -2 557 197 857 288 96 9 chr13 91168496 91168973 -28575925 + L1M4 LINE L1 5297 5816 -368 40294 54 6 1 chr13 91169356 91175479 -28569419 + L1PA4 LINE L1 1 6152 -3 612 160 0 0 chr13 91177159 91177253 -28567645 + AluSc SINE Alu 138 231 -78 394 236 38 0 chr13 91177253 91177359 -28567539 - L1PA16 LINE L1 -38 6128 6019 1188 41 0 0 chr13 91177374 91177520 -28567378 + (GAAAA)n Simple_repeat Simple_repeat 4 149 0 2722 166 48 62 chr13 91177524 91177908 -28566990 + L1P3 LINE L1 5 378 -6083 219 36 0 0 chr13 91177908 91177936 -28566962 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2722 166 48 62 chr13 91177936 91178179 -28566719 + L1P3 LINE L1 378 623 -5838 2216 83 3 0 chr13 91178193 91178519 -28566379 + L1P3 LINE L1 5291 5617 -537 431 211 108 18 chr13 91178968 91179134 -28565764 - L1M2 LINE L1 -733 5567 5387 1515 186 60 26 chr13 91179146 91179496 -28565402 - THE1C LTR MaLR 0 375 14 1052 260 67 2 chr13 91179590 91180056 -28564842 - L1M2 LINE L1 -912 5234 4739 2656 188 42 28 chr13 91180080 91180654 -28564244 - L1PB3 LINE L1 -1 6210 5629 2749 233 36 18 chr13 91180656 91181425 -28563473 - L1PB3 LINE L1 -1814 4389 3607 2681 124 45 31 chr13 91181425 91181909 -28562989 - LTR22B LTR ERVK 0 492 2 18212 129 34 0 chr13 91181909 91184647 -28560251 - HERVK22 LTR ERVK -1 6836 4008 525 202 0 0 chr13 91184648 91184747 -28560151 - HERVK22 LTR ERVK -3016 3821 3723 706 218 35 7 chr13 91184755 91184897 -28560001 - HERVK22 LTR ERVK -4365 2472 2327 26 0 0 0 chr13 91184897 91184923 -28559975 + AT_rich Low_complexity Low_complexity 1 26 0 4013 173 42 4 chr13 91185334 91186057 -28558841 - HERVK22 LTR ERVK -6085 752 3 2591 131 49 39 chr13 91186059 91186546 -28558352 - LTR22B LTR ERVK 0 492 1 3037 262 73 16 chr13 91186547 91188064 -28556834 - L1PB3 LINE L1 -2592 3611 1850 2088 132 0 25 chr13 91188064 91188382 -28556516 - AluSp SINE Alu -3 310 1 3037 262 73 16 chr13 91188382 91188804 -28556094 - L1PB3 LINE L1 -4353 1850 1453 4630 113 20 25 chr13 91188815 91189506 -28555392 + LTR12 LTR ERV1 1 688 0 3150 227 61 21 chr13 91189510 91190415 -28554483 - L1PB3 LINE L1 -5087 1117 165 844 241 48 52 chr13 91190416 91190836 -28554062 + L1PA15-16 LINE L1 1806 2223 -4626 1648 305 45 25 chr13 91190878 91191735 -28553163 + L1PA15-16 LINE L1 2216 3087 -3762 437 366 61 9 chr13 91191777 91191990 -28552908 + L1 LINE L1 3245 3468 -3381 445 186 20 39 chr13 91191994 91192096 -28552802 - L1M1 LINE L1 -5505 2060 1961 492 220 95 55 chr13 91192100 91192300 -28552598 - L1M1 LINE L1 -7335 230 23 30159 46 3 1 chr13 91193005 91197588 -28547310 + L1PA3 LINE L1 1564 6152 -3 1171 261 32 2 chr13 91197582 91197985 -28546913 + L1 LINE L1 3623 4037 -2812 * 955 174 6 0 chr13 91197988 91198155 -28546743 - AluY SINE Alu -143 168 1 2108 257 60 22 chr13 91198162 91199124 -28545774 - L1PA13 LINE L1 -4113 2684 1677 23 78 0 0 chr13 91199138 91199189 -28545709 + AT_rich Low_complexity Low_complexity 1 51 0 196 310 270 26 chr13 91199627 91199853 -28545045 - L3 LINE CR1 -26 1551 1271 336 260 65 91 chr13 91199856 91200087 -28544811 - L1MC4 LINE L1 -110 7932 7708 1069 165 0 21 chr13 91200102 91200290 -28544608 - AluY SINE Alu -10 301 118 725 135 0 0 chr13 91200396 91200507 -28544391 - AluY SINE Alu -200 111 1 631 151 0 25 chr13 91200510 91200629 -28544269 - L1PB3 LINE L1 -1 6153 6038 22 0 0 0 chr13 91200636 91200658 -28544240 + AT_rich Low_complexity Low_complexity 1 22 0 640 249 35 6 chr13 91200671 91200840 -28544058 - L1PB4 LINE L1 -104 6052 5879 * 1119 289 47 25 chr13 91200837 91201470 -28543428 - L1 LINE L1 -2647 4918 4272 2792 203 78 6 chr13 91201566 91202220 -28542678 - L1MA2 LINE L1 0 6304 5604 4776 150 56 68 chr13 91202237 91202514 -28542384 - L1 LINE L1 -4282 3283 3004 194 0 39 0 chr13 91202514 91202540 -28542358 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4776 150 56 68 chr13 91202540 91202782 -28542116 - L1 LINE L1 -4561 3004 2761 2626 30 0 3 chr13 91202782 91203084 -28541814 - AluY SINE Alu -10 301 1 4776 150 56 68 chr13 91203084 91203265 -28541633 - L1 LINE L1 -4804 2761 2579 2045 120 0 29 chr13 91203265 91203573 -28541325 - AluY SINE Alu -12 299 1 4776 150 56 68 chr13 91203573 91204123 -28540775 - L1 LINE L1 -4986 2579 2046 780 139 73 26 chr13 91204308 91204459 -28540439 + AluY SINE Alu 138 295 -16 25754 77 11 6 chr13 91204459 91207779 -28537119 - HERV30 LTR ERV1 -4905 3352 17 1861 237 19 0 chr13 91207779 91207795 -28537103 + MSTA-int LTR MaLR 1217 1231 -420 4583 119 23 3 chr13 91207795 91208503 -28536395 - LTR30 LTR ERV1 0 722 1 1861 237 19 0 chr13 91208503 91208899 -28535999 + MSTA-int LTR MaLR 1231 1637 -14 1442 262 81 2 chr13 91208912 91209309 -28535589 + MSTA LTR MaLR 1 428 0 1630 213 131 8 chr13 91209974 91210355 -28534543 + MSTA LTR MaLR 1 428 0 419 293 83 18 chr13 91210391 91210772 -28534126 + LTR40c LTR ERVL 60 462 0 514 331 27 5 chr13 91211189 91211373 -28533525 + HERVL40 LTR ERVL 2867 3054 -2476 1126 142 79 0 chr13 91211603 91211793 -28533105 - LTR12 LTR ERV1 -133 581 377 300 243 29 19 chr13 91211794 91211897 -28533001 - LTR30 LTR ERV1 -80 642 539 5856 137 40 98 chr13 91211897 91213253 -28531645 - pTR5 LTR ERV1 -419 2019 743 642 359 73 42 chr13 91213256 91213952 -28530946 + HERVL40 LTR ERVL 3233 3950 -1580 1442 192 4 0 chr13 91215114 91215369 -28529529 + L1PA13 LINE L1 5680 5935 -228 960 218 38 9 chr13 91215381 91215649 -28529249 + MER52C-int LTR ERV1 1212 2379 -3884 1952 149 0 0 chr13 91215649 91215931 -28528967 + AluSx SINE Alu 1 282 -30 1698 174 31 0 chr13 91215948 91216236 -28528662 + AluSq SINE Alu 1 297 -16 2785 201 72 80 chr13 91216237 91217199 -28527699 + MER52C-int LTR ERV1 1277 2230 -2987 1666 50 5 0 chr13 91217203 91217423 -28527475 - L1PA4 LINE L1 -794 5352 5132 6810 32 0 4 chr13 91217423 91218228 -28526670 + L1PA4 LINE L1 5344 6155 0 1608 166 78 25 chr13 91218228 91218625 -28526273 + MER52C-int LTR ERV1 4314 4731 -2806 1161 205 102 21 chr13 91218615 91218947 -28525951 + MER52C-int LTR ERV1 2443 2801 -2416 * 402 264 14 7 chr13 91218948 91219088 -28525810 + MER52C-int LTR ERV1 4549 4689 -1257 366 148 16 0 chr13 91219094 91219155 -28525743 + MER52C-int LTR ERV1 5976 6037 -1168 * 815 221 41 20 chr13 91219145 91219340 -28525558 + MER52C-int LTR ERV1 6892 7090 -1 1286 260 7 16 chr13 91219368 91219676 -28525222 + MER52C LTR ERV1 12 316 -962 1640 204 0 0 chr13 91219688 91220018 -28524880 - AluSx SINE Alu 0 335 6 318 173 27 13 chr13 91220026 91220101 -28524797 + L1PA13 LINE L1 6082 6157 -6 399 21 0 0 chr13 91220249 91220297 -28524601 + (TG)n Simple_repeat Simple_repeat 1 48 0 1024 245 87 33 chr13 91220432 91220800 -28524098 + MSTD LTR MaLR 9 396 0 829 242 33 14 chr13 91221467 91221678 -28523220 + L1PA15 LINE L1 1640 1854 -4933 7014 226 55 24 chr13 91221679 91224576 -28520322 + L1PA15 LINE L1 3371 6382 -434 353 81 16 0 chr13 91224576 91224638 -28520260 + (CA)n Simple_repeat Simple_repeat 2 64 0 7014 226 55 24 chr13 91224638 91225084 -28519814 + L1PA15 LINE L1 6382 6813 -3 838 211 37 5 chr13 91226402 91226592 -28518306 - L1PB4 LINE L1 -180 5976 5781 631 209 17 0 chr13 91226593 91226708 -28518190 + L1PB4 LINE L1 6016 6132 -24 1830 146 0 7 chr13 91226733 91227045 -28517853 - AluSc SINE Alu 0 322 13 27 81 0 0 chr13 91227104 91227166 -28517732 + AT_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chr13 91227248 91227272 -28517626 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 91227456 91227484 -28517414 + AT_rich Low_complexity Low_complexity 1 28 0 2573 15 0 67 chr13 91227787 91228116 -28516782 + AluY SINE Alu 1 307 -4 3795 205 73 2 chr13 91228118 91229044 -28515854 - L1PA13 LINE L1 -19 6144 5141 826 120 8 0 chr13 91229044 91229177 -28515721 + L1PB1 LINE L1 6018 6151 0 1437 211 32 0 chr13 91229372 91229652 -28515246 + AluSx SINE Alu 1 289 -23 24 53 0 0 chr13 91229652 91229690 -28515208 + AT_rich Low_complexity Low_complexity 1 38 0 1428 233 48 18 chr13 91229691 91230090 -28514808 + L1MA7 LINE L1 5477 5887 -404 472 257 14 7 chr13 91230203 91230351 -28514547 - L1M1 LINE L1 -3916 3649 3501 1602 248 43 3 chr13 91230390 91230781 -28514117 - L1PA15 LINE L1 -44 6121 5715 1423 229 20 120 chr13 91230758 91231178 -28513720 - L1 LINE L1 -1117 5029 4568 * 1236 92 75 0 chr13 91231178 91231351 -28513547 + AluY SINE Alu 124 309 -2 1423 229 20 120 chr13 91231351 91231430 -28513468 - L1 LINE L1 -1578 4568 4483 7039 52 1 4 chr13 91231430 91233072 -28511826 + L1PA4 LINE L1 4512 6150 -5 1423 229 20 120 chr13 91233072 91233482 -28511416 - L1 LINE L1 -1663 4483 4129 * 2663 321 57 62 chr13 91233472 91233582 -28511316 - L1M1 LINE L1 -5295 2271 2162 1819 148 0 0 chr13 91233582 91233853 -28511045 - AluSq SINE Alu -4 309 39 2663 321 57 62 chr13 91233853 91235263 -28509635 - L1M1 LINE L1 -5404 2162 759 1349 251 63 4 chr13 91235303 91235762 -28509136 - L1MA9 LINE L1 -38 6274 5789 1252 218 11 0 chr13 91235762 91236037 -28508861 + HSMAR2 DNA Mariner 2 279 -1023 1516 224 26 3 chr13 91236042 91236390 -28508508 - HSMAR2 DNA Mariner -645 657 302 228 261 63 9 chr13 91236393 91236504 -28508394 + L1M4c LINE L1 2032 2148 -4236 6108 238 36 28 chr13 91236544 91237973 -28506925 + L1PA10 LINE L1 237 1677 -5110 1855 183 48 0 chr13 91237973 91238329 -28506569 - LTR25 LTR ERV1 0 794 422 1347 157 83 8 chr13 91238298 91238540 -28506358 - LTR25 LTR ERV1 -276 518 259 * 1228 261 60 18 chr13 91238569 91239018 -28505880 - L1M2 LINE L1 -4237 2870 2403 1498 222 4 98 chr13 91239021 91239471 -28505427 - L1M2 LINE L1 -5099 1931 1524 1879 175 97 0 chr13 91239471 91239820 -28505078 + LTR22 LTR ERVK 1 383 -126 5135 139 50 26 chr13 91239914 91240101 -28504797 + HERVK22 LTR ERVK 1 182 -6655 2126 132 0 6 chr13 91240101 91240412 -28504486 + AluY SINE Alu 1 309 -2 5135 139 50 26 chr13 91240412 91241108 -28503790 + HERVK22 LTR ERVK 182 905 -5932 * 14735 119 25 6 chr13 91241100 91241944 -28502954 + HERVK22 LTR ERVK 2325 3152 -3685 3904 104 48 96 chr13 91241944 91242666 -28502232 - LTR12 LTR ERV1 0 688 1 14735 119 25 6 chr13 91242666 91244029 -28500869 + HERVK22 LTR ERVK 3152 4573 -2264 6956 46 29 0 chr13 91244524 91245745 -28499153 + L1PA3 LINE L1 4904 6155 0 1037 240 19 50 chr13 91245915 91245973 -28498925 + L1PA10 LINE L1 3140 3198 -3599 1904 141 3 10 chr13 91245973 91246270 -28498628 + AluY SINE Alu 1 295 -16 1037 240 19 50 chr13 91246270 91246532 -28498366 + L1PA10 LINE L1 3198 3450 -3347 10642 178 59 0 chr13 91246534 91249561 -28495337 + L1PA10 LINE L1 3716 6801 -18 285 51 0 0 chr13 91249695 91249734 -28495164 + (TTA)n Simple_repeat Simple_repeat 1 39 0 7602 161 24 7 chr13 91250353 91251636 -28493262 - L1P LINE L1 -4831 1315 11 4928 168 9 26 chr13 91251647 91252523 -28492375 - L1P3 LINE L1 -5591 870 10 25 0 0 0 chr13 91253934 91253959 -28490939 + AT_rich Low_complexity Low_complexity 1 25 0 1272 259 3 0 chr13 91253963 91254260 -28490638 - AluJb SINE Alu -9 303 6 27 96 0 0 chr13 91254329 91254412 -28490486 + AT_rich Low_complexity Low_complexity 1 83 0 220 250 0 54 chr13 91254481 91254593 -28490305 + T-rich Low_complexity Low_complexity 4 109 0 4386 283 55 41 chr13 91255555 91256963 -28487935 - L1PA13 LINE L1 -2401 4396 3009 315 0 0 0 chr13 91256963 91256998 -28487900 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4386 283 55 41 chr13 91256998 91257190 -28487708 - L1PA13 LINE L1 -3788 3009 2821 4766 123 17 4 chr13 91257190 91257946 -28486952 - MER4E LTR ERV1 0 766 1 4386 283 55 41 chr13 91257946 91258550 -28486348 - L1PA13 LINE L1 -3976 2821 2161 1013 231 60 32 chr13 91258550 91258832 -28486066 + THE1C LTR MaLR 1 290 -85 5077 209 26 16 chr13 91258832 91259848 -28485050 + THE1-int LTR MaLR 549 1574 -6 4449 306 84 29 chr13 91259853 91261453 -28483445 - L1PA13 LINE L1 -4951 1836 148 25 75 0 0 chr13 91261515 91261568 -28483330 + AT_rich Low_complexity Low_complexity 1 53 0 4051 245 70 40 chr13 91261568 91262202 -28482696 - L1 LINE L1 -977 5169 4555 281 26 26 0 chr13 91262202 91262240 -28482658 + (TG)n Simple_repeat Simple_repeat 2 40 0 4051 245 70 40 chr13 91262240 91262391 -28482507 - L1 LINE L1 -1591 4555 4410 1626 108 13 17 chr13 91262391 91262622 -28482276 - AluY SINE Alu -77 234 5 4051 245 70 40 chr13 91262622 91263445 -28481453 - L1 LINE L1 -1736 4410 3513 833 167 7 7 chr13 91263582 91263726 -28481172 + THE1C LTR MaLR 232 375 0 22 35 0 0 chr13 91264677 91264706 -28480192 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 91264802 91264837 -28480061 + AT_rich Low_complexity Low_complexity 1 35 0 2302 78 0 31 chr13 91265407 91265728 -28479170 + AluY SINE Alu 1 311 0 225 0 0 0 chr13 91265897 91265922 -28478976 + (T)n Simple_repeat Simple_repeat 1 25 0 281 256 3 14 chr13 91267404 91267485 -28477413 - L1MA6 LINE L1 -48 6251 6162 271 226 129 0 chr13 91267642 91267704 -28477194 - MER61E LTR ERV1 -4 565 496 281 175 25 38 chr13 91267771 91267851 -28477047 - LTR25 LTR ERV1 -501 293 215 * 322 176 11 143 chr13 91267831 91267922 -28476976 - MER61E LTR ERV1 -458 111 33 1743 221 38 21 chr13 91267935 91268356 -28476542 - LTR51 LTR ERV1 -212 459 32 387 235 96 17 chr13 91268609 91268724 -28476174 + L1M4 LINE L1 657 780 -5762 423 0 0 0 chr13 91268724 91268771 -28476127 + (CA)n Simple_repeat Simple_repeat 2 48 0 3696 228 79 58 chr13 91268773 91268995 -28475903 + L1P4 LINE L1 3697 3913 -2253 1936 171 7 0 chr13 91268995 91269293 -28475605 + AluSp SINE Alu 5 304 -9 3696 228 79 58 chr13 91269293 91271078 -28473820 + L1P4 LINE L1 3913 5758 -408 4797 139 0 5 chr13 91271231 91272000 -28472898 + L1PA7 LINE L1 5389 6153 -1 2625 193 40 22 chr13 91272001 91272633 -28472265 + L1MA2 LINE L1 5653 6295 -9 27 0 0 0 chr13 91272633 91272660 -28472238 + AT_rich Low_complexity Low_complexity 1 27 0 2082 280 24 39 chr13 91272661 91273549 -28471349 - L1 LINE L1 -1820 5745 4858 3760 200 30 34 chr13 91273549 91274412 -28470486 - L1PA14 LINE L1 0 6172 5307 948 300 21 7 chr13 91274412 91274699 -28470199 - AluJb SINE Alu -11 291 1 3760 200 30 34 chr13 91274699 91274957 -28469941 - L1PA14 LINE L1 -865 5307 3406 2763 257 38 11 chr13 91274956 91275805 -28469093 + L1P LINE L1 4213 5084 -1062 * 1210 282 86 3 chr13 91275816 91276480 -28468418 - L1 LINE L1 -2691 4874 4156 783 216 89 76 chr13 91276521 91276891 -28468007 - THE1C LTR MaLR 0 375 1 3455 225 68 20 chr13 91276897 91277738 -28467160 - THE1C-int LTR MaLR -7 1573 693 1714 234 67 26 chr13 91277758 91278327 -28466571 - L1 LINE L1 -4968 2597 2006 450 343 138 55 chr13 91278372 91279230 -28465668 + L1PA12 LINE L1 8 936 -6645 901 350 43 50 chr13 91279449 91280413 -28464485 + L1PA12 LINE L1 1347 2080 -5501 * 2672 293 33 22 chr13 91280390 91280809 -28464089 + L1PA12 LINE L1 1710 2123 -5458 1674 166 35 44 chr13 91280809 91281176 -28463722 + THE1B LTR MaLR 1 364 0 2672 293 33 22 chr13 91281176 91281696 -28463202 + L1PA12 LINE L1 2123 2659 -4922 1456 202 47 18 chr13 91281703 91282044 -28462854 + L1MA2 LINE L1 5952 6302 -2 1551 244 28 27 chr13 91282059 91282486 -28462412 + MST-int LTR MaLR 337 1239 -412 4521 119 13 15 chr13 91282496 91283210 -28461688 - LTR30 LTR ERV1 -10 712 1 3334 77 22 4 chr13 91283210 91283664 -28461234 - HERV30 LTR ERV1 0 8257 7796 2748 68 3 0 chr13 91283666 91284021 -28460877 - HERV30 LTR ERV1 -4644 3613 3258 375 158 55 14 chr13 91284022 91284110 -28460788 + AluY SINE Alu 1 80 -221 14040 79 14 5 chr13 91284717 91286693 -28458205 + L1P LINE L1 1 1993 -4153 4044 220 36 14 chr13 91287117 91288837 -28456061 - L1PB2 LINE L1 -41 6110 4355 759 160 53 18 chr13 91288847 91289016 -28455882 + L1MA1 LINE L1 5997 6171 -131 1385 193 0 0 chr13 91289059 91289302 -28455596 - AluSq SINE Alu -70 243 1 735 160 8 0 chr13 91289303 91289428 -28455470 + L1MA1 LINE L1 6157 6282 -20 192 178 43 49 chr13 91289601 91289764 -28455134 + A-rich Low_complexity Low_complexity 5 166 0 343 241 11 48 chr13 91289787 91290037 -28454861 + A-rich Low_complexity Low_complexity 1 240 0 291 234 5 73 chr13 91290056 91290248 -28454650 + A-rich Low_complexity Low_complexity 2 180 0 188 40 80 40 chr13 91290296 91290346 -28454552 + A-rich Low_complexity Low_complexity 3 54 0 279 111 10 61 chr13 91290401 91290500 -28454398 + (TAAAA)n Simple_repeat Simple_repeat 2 95 0 303 235 16 75 chr13 91290513 91290700 -28454198 + A-rich Low_complexity Low_complexity 2 177 0 204 236 34 34 chr13 91290715 91290804 -28454094 + A-rich Low_complexity Low_complexity 1 89 0 15836 54 1 1 chr13 91290943 91292992 -28451906 - L1P LINE L1 -2175 3971 1923 348 211 0 0 chr13 91293095 91293171 -28451727 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 1370 251 93 47 chr13 91293171 91293259 -28451639 + L1M4 LINE L1 4226 4308 -1838 1036 237 10 65 chr13 91293259 91293567 -28451331 - AluJo SINE Alu -11 291 1 1370 251 93 47 chr13 91293567 91293747 -28451151 + L1M4 LINE L1 4308 4478 -1668 2161 102 0 49 chr13 91293747 91294071 -28450827 + AluY SINE Alu 1 308 -3 1370 251 93 47 chr13 91294071 91294422 -28450476 + L1M4 LINE L1 4478 4890 -1256 2078 105 13 3 chr13 91294422 91294727 -28450171 + AluSg SINE Alu 1 308 -2 1370 251 93 47 chr13 91294727 91294866 -28450032 + L1M4 LINE L1 4890 5021 -1125 436 302 88 15 chr13 91295013 91295341 -28449557 + L1M4 LINE L1 5008 5359 -787 826 261 181 5 chr13 91295351 91295681 -28449217 + L1MA5 LINE L1 5518 5912 -419 224 200 17 0 chr13 91295681 91295741 -28449157 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 183 282 145 30 chr13 91295881 91296012 -28448886 - MIR SINE MIR -26 236 91 1962 133 27 3 chr13 91296198 91296499 -28448399 - AluSq SINE Alu -1 312 5 1630 145 19 74 chr13 91296761 91297085 -28447813 + AluSg SINE Alu 1 306 -4 21 43 0 22 chr13 91297380 91297406 -28447492 + AT_rich Low_complexity Low_complexity 1 27 -18 1854 76 0 24 chr13 91297406 91297655 -28447243 + AluY SINE Alu 69 311 0 21 43 0 22 chr13 91297655 91297674 -28447224 + AT_rich Low_complexity Low_complexity 27 45 0 4247 265 61 8 chr13 91297873 91299430 -28445468 + L1 LINE L1 2316 3954 -2192 3186 314 135 22 chr13 91299428 91300943 -28443955 + L1M2 LINE L1 1 1686 -5163 * 995 301 10 24 chr13 91301116 91301408 -28443490 + AluJo SINE Alu 1 288 -14 258 270 0 14 chr13 91301948 91302022 -28442876 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 400 250 0 0 chr13 91302920 91303008 -28441890 + FLAM_C SINE Alu 22 109 -24 3701 109 12 3 chr13 91303022 91303609 -28441289 - L1PA7 LINE L1 0 6154 5563 537 184 77 117 chr13 91303896 91304092 -28440806 - THE1C LTR MaLR -187 188 1 207 0 0 0 chr13 91304249 91304272 -28440626 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 7254 37 16 0 chr13 91304272 91305655 -28439243 - L1PA3 LINE L1 -6 6149 4756 23 33 0 0 chr13 91306796 91306826 -28438072 + AT_rich Low_complexity Low_complexity 1 30 0 447 304 51 0 chr13 91306945 91307103 -28437795 - MER5A DNA MER1_type -18 171 6 1202 240 20 10 chr13 91307923 91308223 -28436675 + L1PA15 LINE L1 5859 6161 -4 1621 196 10 3 chr13 91308234 91308525 -28436373 + AluSc SINE Alu 1 293 -16 231 61 0 0 chr13 91308529 91308562 -28436336 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 243 285 85 31 chr13 91308662 91308792 -28436106 + L1MC4 LINE L1 7903 8039 -3 24 32 0 0 chr13 91309273 91309304 -28435594 + AT_rich Low_complexity Low_complexity 1 31 0 515 256 93 81 chr13 91309316 91309723 -28435175 - L1 LINE L1 -2575 3571 3160 1349 256 10 3 chr13 91309735 91310040 -28434858 + L1PA16 LINE L1 5854 6160 -6 1145 269 54 16 chr13 91310040 91310463 -28434435 - L1 LINE L1 -3078 3068 2630 1533 231 90 15 chr13 91310471 91311004 -28433894 - L1MA5 LINE L1 0 6300 5728 290 312 86 0 chr13 91311511 91311604 -28433294 - FLAM_A SINE Alu -32 101 1 2978 258 54 17 chr13 91312219 91313254 -28431644 + L1MC3 LINE L1 3208 4280 -1866 1399 307 89 36 chr13 91313415 91314560 -28430338 + L1MC3 LINE L1 5858 7063 -722 236 250 96 29 chr13 91314595 91314699 -28430199 + L1MD3 LINE L1 7055 7165 -830 315 284 86 4 chr13 91314704 91314936 -28429962 + L1P LINE L1 1949 2199 -3947 21 36 0 0 chr13 91415166 91415194 -28329704 + AT_rich Low_complexity Low_complexity 1 28 0 1407 136 0 0 chr13 91415289 91415502 -28329396 - AluSq SINE Alu -2 311 99 2036 102 36 0 chr13 91415505 91415816 -28329082 + AluSq SINE Alu 1 321 0 24 77 0 0 chr13 91416029 91416081 -28328817 + AT_rich Low_complexity Low_complexity 1 52 0 32 0 0 0 chr13 91416226 91416258 -28328640 + AT_rich Low_complexity Low_complexity 1 32 0 492 308 127 18 chr13 91416846 91417184 -28327714 - L2 LINE L2 -175 3138 2768 2960 126 0 2 chr13 91417368 91417782 -28327116 - MER9 LTR ERVK -98 413 1 230 273 0 0 chr13 91418563 91418607 -28326291 + Charlie1 DNA MER1_type 1 44 -2717 1235 244 27 15 chr13 91418610 91419020 -28325878 + Charlie1 DNA MER1_type 2346 2760 -1 21 0 0 0 chr13 91419198 91419219 -28325679 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr13 91420189 91420223 -28324675 + AT_rich Low_complexity Low_complexity 1 34 0 1770 163 59 101 chr13 91421610 91422017 -28322881 - MSTC LTR MaLR 0 428 58 1705 201 0 3 chr13 91422017 91422325 -28322573 - AluJb SINE Alu -2 310 4 1770 163 59 101 chr13 91422325 91422364 -28322534 - MSTC LTR MaLR -370 58 19 471 169 220 0 chr13 91423196 91423314 -28321584 + L1MA5 LINE L1 6157 6300 0 313 316 89 58 chr13 91423873 91424186 -28320712 - L1M4 LINE L1 -1948 4198 3876 420 266 14 22 chr13 91430139 91430278 -28314620 - MER21B LTR ERV1 -397 466 329 32 26 0 0 chr13 91430420 91430459 -28314439 + AT_rich Low_complexity Low_complexity 1 39 0 7501 36 2 0 chr13 91430459 91431830 -28313068 - L1PA3 LINE L1 -3 6152 4781 7110 37 0 28 chr13 91431830 91432740 -28312158 + L1P LINE L1 3845 4729 -1417 631 281 133 51 chr13 91432736 91433549 -28311349 - L1M4 LINE L1 -2291 3855 2935 * 4882 122 3 3 chr13 91433549 91434276 -28310622 + L1PA13 LINE L1 5424 6150 -13 631 281 133 51 chr13 91434276 91434503 -28310395 - L1M4 LINE L1 -3211 2935 2728 244 317 127 23 chr13 91434820 91435079 -28309819 + L2 LINE L2 3027 3312 -1 568 317 21 0 chr13 91435927 91436113 -28308785 + MIR SINE MIR 63 252 -10 211 235 8 89 chr13 91436199 91436278 -28308620 - MIR SINE MIR -83 125 42 209 299 30 15 chr13 91436418 91436485 -28308413 - MER5A DNA MER1_type -3 186 119 1391 195 27 14 chr13 91436490 91436787 -28308111 - AluJo SINE Alu -11 301 1 262 243 27 14 chr13 91438241 91438315 -28306583 + L1MC4 LINE L1 6652 6726 -1316 511 292 30 43 chr13 91438441 91438674 -28306224 - MLT1K LTR MaLR -4 584 355 295 188 188 38 chr13 91439095 91439226 -28305672 - MLT1H1 LTR MaLR -9 546 413 326 250 225 8 chr13 91439468 91439588 -28305310 - MLT1G1 LTR MaLR -416 179 34 186 43 0 0 chr13 91439712 91439735 -28305163 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1512 206 11 0 chr13 91439741 91440018 -28304880 - AluJb SINE Alu -32 280 1 28 29 0 0 chr13 91440098 91440133 -28304765 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 91440613 91440636 -28304262 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 91441334 91441362 -28303536 + AT_rich Low_complexity Low_complexity 1 28 0 264 59 0 0 chr13 91443907 91443941 -28300957 + (TG)n Simple_repeat Simple_repeat 2 35 0 2016 144 0 3 chr13 91444135 91444448 -28300450 - AluSx SINE Alu 0 312 1 210 378 91 0 chr13 91444664 91444807 -28300091 + MIR SINE MIR 11 166 -96 323 93 0 0 chr13 91444835 91444902 -28299996 + Alu SINE Alu 242 308 0 30 45 0 0 chr13 91445159 91445203 -28299695 + AT_rich Low_complexity Low_complexity 1 44 0 300 212 0 0 chr13 91445212 91445278 -28299620 + (TA)n Simple_repeat Simple_repeat 1 66 0 887 228 62 28 chr13 91445427 91445805 -28299093 + MER74A LTR ERVL 15 478 -80 789 330 82 24 chr13 91446305 91446769 -28298129 + LTR33 LTR ERVL 23 513 -8 204 182 0 0 chr13 91447573 91447617 -28297281 + (CA)n Simple_repeat Simple_repeat 1 44 0 2073 223 40 20 chr13 91447800 91448406 -28296492 - L1MB7 LINE L1 0 6184 5567 205 161 0 0 chr13 91449471 91449502 -28295396 + T-rich Low_complexity Low_complexity 2 32 0 186 274 27 68 chr13 91449523 91449596 -28295302 + MIR3 SINE MIR 118 187 -21 21 36 0 0 chr13 91450193 91450221 -28294677 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr13 91450489 91450524 -28294374 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr13 91450548 91450576 -28294322 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 387 0 0 0 chr13 91450575 91450618 -28294280 + (GA)n Simple_repeat Simple_repeat 2 44 0 252 0 0 0 chr13 91452204 91452232 -28292666 + (CAATA)n Simple_repeat Simple_repeat 5 32 0 1400 174 80 0 chr13 91452236 91452511 -28292387 + MER7A DNA MER2_type 7 301 -45 346 161 0 0 chr13 91453915 91453971 -28290927 - AluJ/FRAM SINE Alu -31 271 216 952 198 25 25 chr13 91454023 91454220 -28290678 - AluJo SINE Alu -115 197 1 471 281 16 43 chr13 91454318 91454503 -28290395 - L1ME2 LINE L1 -91 6073 5894 26 30 0 0 chr13 91454851 91454884 -28290014 + AT_rich Low_complexity Low_complexity 1 33 0 2212 95 0 32 chr13 91455405 91455721 -28289177 - AluSc SINE Alu -1 308 3 396 214 0 82 chr13 91456114 91456212 -28288686 - L2 LINE L2 0 3313 3224 1551 234 43 3 chr13 91456723 91457074 -28287824 - MLT1A1 LTR MaLR 0 365 1 28 0 0 0 chr13 91457096 91457124 -28287774 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr13 91457248 91457290 -28287608 + AT_rich Low_complexity Low_complexity 1 42 0 439 118 76 0 chr13 91458315 91458459 -28286439 + (TA)n Simple_repeat Simple_repeat 1 155 0 345 337 73 43 chr13 91460048 91460348 -28284550 + HAL1 LINE L1 1373 1681 -826 202 216 11 57 chr13 91460667 91460755 -28284143 + A-rich Low_complexity Low_complexity 2 85 0 1967 125 14 0 chr13 91461238 91461544 -28283354 - AluSx SINE Alu 0 310 1 369 161 0 0 chr13 91461834 91461896 -28283002 - AluSq SINE Alu -99 204 143 438 20 0 0 chr13 91462384 91462435 -28282463 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1979 129 3 0 chr13 91462810 91463097 -28281801 + AluSx SINE Alu 1 288 -24 29 0 0 0 chr13 91463098 91463127 -28281771 + AT_rich Low_complexity Low_complexity 1 29 0 2358 61 0 16 chr13 91463132 91463471 -28281427 + AluY SINE Alu 1 311 0 204 40 0 0 chr13 91463925 91463950 -28280948 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 347 290 21 28 chr13 91464020 91464165 -28280733 - MER90 LTR ERV1 -86 528 385 * 602 241 68 21 chr13 91464163 91464399 -28280499 - MER90 LTR ERV1 -307 268 22 3026 169 63 50 chr13 91464951 91465651 -28279247 + LTR1 LTR ERV1 77 785 0 34 55 0 0 chr13 91466101 91466156 -28278742 + AT_rich Low_complexity Low_complexity 1 55 0 712 341 49 11 chr13 91466358 91466727 -28278171 + LTR16A LTR ERVL 56 438 -12 45 55 0 0 chr13 91466877 91466950 -28277948 + AT_rich Low_complexity Low_complexity 1 73 0 1370 188 35 42 chr13 91467329 91467706 -28277192 - L1MB8 LINE L1 -2 6176 5803 1987 98 15 0 chr13 91468336 91468610 -28276288 + AluSx SINE Alu 26 303 -9 1769 148 85 20 chr13 91470027 91470379 -28274519 + THE1C LTR MaLR 1 375 0 1413 225 45 81 chr13 91470446 91470554 -28274344 + MER67D LTR ERV1 1 111 -403 2113 120 7 3 chr13 91470554 91470863 -28274035 + AluSx SINE Alu 1 310 -2 1413 225 45 81 chr13 91470863 91471287 -28273611 + MER67D LTR ERV1 111 514 0 21 0 0 0 chr13 91471599 91471620 -28273278 + AT_rich Low_complexity Low_complexity 1 21 0 441 141 0 0 chr13 91471630 91471708 -28273190 - L1MA1 LINE L1 -2 6300 6223 2562 102 38 3 chr13 91471718 91471948 -28272950 + L1MA1 LINE L1 5815 6066 -236 228 35 0 0 chr13 91471948 91471977 -28272921 + (CA)n Simple_repeat Simple_repeat 2 30 0 2562 102 38 3 chr13 91471977 91472137 -28272761 + L1MA1 LINE L1 6066 6219 -83 1864 254 35 9 chr13 91474244 91474925 -28269973 - L1MC4 LINE L1 -222 7820 6960 794 250 40 38 chr13 91475007 91475424 -28269474 + LTR38 LTR ERV1 91 551 -5 844 271 56 8 chr13 91475433 91475675 -28269223 - L1MC4a LINE L1 -941 6867 6611 3431 91 2 0 chr13 91475675 91476127 -28268771 + MLT2A2 LTR ERVL 1 453 0 189 107 0 0 chr13 91476142 91476170 -28268728 + (TG)n Simple_repeat Simple_repeat 1 28 0 1028 322 40 26 chr13 91476537 91476962 -28267936 + MER77 LTR ERV1 175 605 0 196 293 146 0 chr13 91477623 91477705 -28267193 + MER5C DNA MER1_type 31 124 -200 21 57 0 0 chr13 91478431 91478466 -28266432 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr13 91478913 91478937 -28265961 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 91478996 91479019 -28265879 + AT_rich Low_complexity Low_complexity 1 23 0 242 286 167 32 chr13 91479135 91479261 -28265637 + L1MEc LINE L1 19 161 -6235 801 186 0 0 chr13 91479268 91479408 -28265490 + L1MA3 LINE L1 5643 5782 -509 394 75 0 0 chr13 91479408 91479461 -28265437 - L1P4 LINE L1 -422 5741 5689 2113 101 23 7 chr13 91479461 91479768 -28265130 + L1PA11 LINE L1 5863 6174 0 1861 115 22 68 chr13 91479792 91479976 -28264922 + L1MA3 LINE L1 5958 6118 -187 1538 156 82 0 chr13 91479976 91480233 -28264665 - AluSx SINE Alu -28 284 7 1861 115 22 68 chr13 91480233 91480413 -28264485 + L1MA3 LINE L1 6118 6305 0 29 28 0 0 chr13 91480419 91480455 -28264443 + AT_rich Low_complexity Low_complexity 1 36 0 372 217 24 0 chr13 91480470 91480553 -28264345 + L1MA9 LINE L1 5956 6040 -272 * 460 231 14 28 chr13 91480539 91480682 -28264216 + L1MA7 LINE L1 6140 6280 -11 4376 204 38 24 chr13 91480924 91481971 -28262927 + L1MB3 LINE L1 4154 5245 -938 1610 158 32 53 chr13 91481971 91482351 -28262547 - THE1C LTR MaLR -3 372 1 4376 204 38 24 chr13 91482351 91483301 -28261597 + L1MB3 LINE L1 5245 6181 -2 207 273 0 0 chr13 91483527 91483593 -28261305 + (TTAA)n Simple_repeat Simple_repeat 2 67 0 303 239 159 9 chr13 91483703 91483816 -28261082 + MER5C DNA MER1_type 127 256 -68 1126 262 57 26 chr13 91486013 91486506 -28258392 - Charlie4a DNA MER1_type 0 508 1 22 0 0 0 chr13 91486790 91486812 -28258086 + AT_rich Low_complexity Low_complexity 1 22 0 188 295 126 0 chr13 91487320 91487415 -28257483 - MIR SINE MIR 0 262 156 532 242 115 30 chr13 91487416 91487730 -28257168 - MSTD LTR MaLR 0 396 2 25 65 0 0 chr13 91488878 91488924 -28255974 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr13 91488980 91489009 -28255889 + AT_rich Low_complexity Low_complexity 1 29 0 356 337 74 42 chr13 91489352 91489661 -28255237 - L1MEc LINE L1 -4641 1755 1437 186 150 33 33 chr13 91489848 91489908 -28254990 + T-rich Low_complexity Low_complexity 1 60 0 24 32 0 0 chr13 91490563 91490594 -28254304 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 91491209 91491231 -28253667 + AT_rich Low_complexity Low_complexity 1 22 0 198 24 0 71 chr13 91491291 91491333 -28253565 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2177 154 20 83 chr13 91492409 91492630 -28252268 + MSTB LTR MaLR 1 180 -246 3671 54 2 12 chr13 91492630 91493111 -28251787 + L1PA7 LINE L1 5669 6144 -10 2177 154 20 83 chr13 91493111 91493344 -28251554 + MSTB LTR MaLR 180 426 0 185 116 0 23 chr13 91494434 91494477 -28250421 + (TA)n Simple_repeat Simple_repeat 2 43 0 359 293 140 68 chr13 91494694 91495001 -28249897 - MER46C DNA MER2_type -5 333 5 868 292 58 25 chr13 91496085 91496195 -28248703 - L2 LINE L2 -817 2497 2392 1954 102 0 11 chr13 91496195 91496480 -28248418 + AluSx SINE Alu 1 282 -30 228 67 0 0 chr13 91496480 91496510 -28248388 + (ATAAG)n Simple_repeat Simple_repeat 1 30 0 868 292 58 25 chr13 91496510 91496792 -28248106 - L2 LINE L2 -921 2393 2091 304 378 43 35 chr13 91496796 91497050 -28247848 - LTR33 LTR ERVL -204 317 62 1533 329 60 41 chr13 91497071 91497999 -28246899 - L2 LINE L2 -2168 1146 201 21 0 0 0 chr13 91498254 91498275 -28246623 + AT_rich Low_complexity Low_complexity 1 21 0 219 200 0 29 chr13 91498905 91498975 -28245923 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 348 304 96 27 chr13 91499202 91499422 -28245476 - L1M4 LINE L1 -1327 4819 4585 252 263 20 10 chr13 91499554 91499653 -28245245 - L1M4 LINE L1 -1742 4404 4305 259 120 160 0 chr13 91499735 91499785 -28245113 - MLT2C1 LTR ERVL 0 464 407 329 223 11 0 chr13 91499900 91499994 -28244904 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 1619 194 41 3 chr13 91499994 91500313 -28244585 - MLT2C1 LTR ERVL -66 331 1 386 328 50 73 chr13 91500409 91501028 -28243870 - L1M4 LINE L1 -2028 4118 3514 261 180 20 10 chr13 91501331 91501431 -28243467 + (TTAAA)n Simple_repeat Simple_repeat 1 101 0 548 295 108 0 chr13 91501855 91502106 -28242792 + L2 LINE L2 1903 2180 -1134 930 323 89 30 chr13 91502134 91502945 -28241953 + L2 LINE L2 1985 2843 -471 289 276 145 105 chr13 91503005 91503349 -28241549 + L2 LINE L2 2956 3313 0 6698 73 14 43 chr13 91504237 91506145 -28238753 - SVA Other Other -518 1386 71 21 0 0 0 chr13 91506161 91506182 -28238716 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 91506910 91506931 -28237967 + AT_rich Low_complexity Low_complexity 1 21 0 3236 183 17 30 chr13 91507893 91508592 -28236306 + L1MB1 LINE L1 5478 6167 -1 25 31 0 0 chr13 91509392 91509424 -28235474 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 91509642 91509663 -28235235 + AT_rich Low_complexity Low_complexity 1 21 0 222 258 0 65 chr13 91511905 91511998 -28232900 + L2 LINE L2 2931 3017 -296 2688 130 8 36 chr13 91512179 91512657 -28232241 + MER4C LTR ERV1 1 465 0 1324 153 20 76 chr13 91512660 91513033 -28231865 + MER4C-int LTR ERV1 1 434 -6164 318 26 0 0 chr13 91513056 91513095 -28231803 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1947 113 4 0 chr13 91513099 91513364 -28231534 - AluSp SINE Alu -37 276 11 289 104 0 75 chr13 91513392 91513459 -28231439 - L1PA3 LINE L1 0 6155 6094 263 75 50 0 chr13 91513460 91513500 -28231398 + MER4C-int LTR ERV1 493 534 -6064 336 118 0 118 chr13 91513588 91513690 -28231208 + MER4C-int LTR ERV1 751 840 -5758 955 212 56 19 chr13 91513786 91514050 -28230848 + MER4C-int LTR ERV1 872 1866 -3014 559 26 26 0 chr13 91514050 91514127 -28230771 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 987 205 0 0 chr13 91514130 91514291 -28230607 - MER1B DNA MER1_type -136 161 1 1308 111 56 59 chr13 91514310 91514580 -28230318 + MER4C-int LTR ERV1 1688 1956 -4642 786 185 0 7 chr13 91514580 91514715 -28230183 + AluJo SINE Alu 1 134 -178 12671 189 62 44 chr13 91514716 91518463 -28226435 + MER4C-int LTR ERV1 1461 6284 -314 191 136 68 11 chr13 91518482 91518570 -28226328 + (TA)n Simple_repeat Simple_repeat 1 93 0 551 116 52 12 chr13 91518578 91518751 -28226147 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 1467 145 3 87 chr13 91518771 91519082 -28225816 + MER4C-int LTR ERV1 6301 6585 -13 2466 157 24 11 chr13 91519106 91519565 -28225333 + MER4C LTR ERV1 1 465 0 181 160 20 20 chr13 91520063 91520113 -28224785 + CT-rich Low_complexity Low_complexity 3 52 0 22 35 0 0 chr13 91520435 91520464 -28224434 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr13 91520663 91520697 -28224201 + (TA)n Simple_repeat Simple_repeat 2 35 0 5338 120 31 3 chr13 91521412 91522660 -28222238 + L1PB2 LINE L1 4874 6149 -2 4433 210 34 3 chr13 91522953 91524784 -28220114 - L1PB4 LINE L1 -7 7587 5706 270 0 0 0 chr13 91524784 91524814 -28220084 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4433 210 34 3 chr13 91524814 91524852 -28220046 - L1PB4 LINE L1 -1888 5706 5671 * 5136 258 37 13 chr13 91524843 91526739 -28218159 - L1PB4 LINE L1 -2971 4613 2684 274 116 0 0 chr13 91526756 91526799 -28218099 + MSTA LTR MaLR 6 48 -380 5259 191 37 10 chr13 91526802 91527783 -28217115 + MSTA-int LTR MaLR 645 1651 0 2304 148 67 7 chr13 91527784 91528188 -28216710 + MSTA LTR MaLR 1 428 0 3840 281 23 41 chr13 91528204 91530080 -28214818 - L1PB4 LINE L1 -4924 2657 7 * 6416 236 34 18 chr13 91530075 91532063 -28212835 - L1M2 LINE L1 -2140 5425 3392 312 137 0 0 chr13 91532063 91532114 -28212784 + (TC)n Simple_repeat Simple_repeat 1 51 0 1041 144 17 6 chr13 91532114 91532287 -28212611 - AluSc SINE Alu 0 309 135 486 116 0 0 chr13 91532287 91532356 -28212542 - AluS SINE Alu -244 69 1 5848 279 133 25 chr13 91532363 91533144 -28211754 - L1M2 LINE L1 -4136 3430 2735 408 71 0 0 chr13 91533144 91533200 -28211698 + (TG)n Simple_repeat Simple_repeat 1 56 0 5848 279 133 25 chr13 91533200 91534858 -28210040 - L1M2 LINE L1 -4831 2735 726 216 0 0 0 chr13 91534860 91534884 -28210014 + (A)n Simple_repeat Simple_repeat 1 24 0 14338 24 1 0 chr13 91535125 91536943 -28207955 - L1P LINE L1 -2031 4115 2297 338 163 0 25 chr13 91537961 91538041 -28206857 + (TATAA)n Simple_repeat Simple_repeat 1 78 0 1562 245 47 26 chr13 91538272 91539137 -28205761 - L1M2 LINE L1 -3717 3848 2959 * 2401 113 32 3 chr13 91539132 91539502 -28205396 - L1PA6 LINE L1 -36 6118 5736 2324 66 7 13 chr13 91539579 91539880 -28205018 - AluY SINE Alu -12 299 1 1513 169 0 55 chr13 91539891 91540199 -28204699 - L1M2 LINE L1 -6730 759 469 22 0 0 0 chr13 91540353 91540375 -28204523 + AT_rich Low_complexity Low_complexity 1 22 0 442 345 43 91 chr13 91540472 91541098 -28203800 + L2 LINE L2 2677 3272 0 2135 105 20 0 chr13 91541226 91541532 -28203366 + AluSx SINE Alu 1 312 0 230 56 28 0 chr13 91541683 91541719 -28203179 + (TTG)n Simple_repeat Simple_repeat 3 39 0 258 299 62 14 chr13 91542931 91543075 -28201823 + MLT1I LTR MaLR 11 161 -248 383 220 0 11 chr13 91543267 91543358 -28201540 + MLT1I LTR MaLR 320 409 0 224 361 173 9 chr13 91543822 91544157 -28200741 + L2 LINE L2 1057 1446 -1868 1594 150 51 22 chr13 91544206 91544507 -28200391 - AluSq SINE Alu 0 309 1 25 0 0 0 chr13 91544564 91544589 -28200309 + AT_rich Low_complexity Low_complexity 1 25 0 5609 166 35 61 chr13 91544666 91545920 -28198978 + Tigger3b DNA MER2_type 4 1224 -7 31 0 0 0 chr13 91546113 91546144 -28198754 + AT_rich Low_complexity Low_complexity 1 31 0 2473 141 3 3 chr13 91546319 91546694 -28198204 + THE1C LTR MaLR 1 375 0 9137 123 31 57 chr13 91546694 91548314 -28196584 + THE1C-int LTR MaLR 1 1578 -2 2372 136 0 14 chr13 91548316 91548685 -28196213 + THE1C LTR MaLR 1 364 -11 23 68 0 0 chr13 91549163 91549207 -28195691 + AT_rich Low_complexity Low_complexity 1 44 0 208 207 0 0 chr13 91552206 91552293 -28192605 + GA-rich Low_complexity Low_complexity 1 87 0 25 0 0 0 chr13 91552681 91552706 -28192192 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr13 91552789 91552828 -28192070 + AT_rich Low_complexity Low_complexity 1 39 0 831 171 79 0 chr13 91555613 91555777 -28189121 + MSTA LTR MaLR 1 177 -251 879 48 0 0 chr13 91555779 91555883 -28189015 + MSTA LTR MaLR 321 424 -4 634 296 76 41 chr13 91556337 91556773 -28188125 - L1ME LINE L1 -394 5768 5318 348 111 42 0 chr13 91556774 91556846 -28188052 + (TA)n Simple_repeat Simple_repeat 2 76 0 189 0 0 0 chr13 91556846 91556867 -28188031 + (GA)n Simple_repeat Simple_repeat 2 22 0 1193 289 72 36 chr13 91556867 91557767 -28187131 - L1ME LINE L1 -917 5229 4297 2003 171 6 0 chr13 91557998 91558338 -28186560 - MER2 DNA MER2_type -1 343 2 25 75 0 0 chr13 91559201 91559254 -28185644 + AT_rich Low_complexity Low_complexity 1 53 0 25 31 0 0 chr13 91559718 91559750 -28185148 + AT_rich Low_complexity Low_complexity 1 32 0 184 151 41 27 chr13 91560224 91560297 -28184601 + (TA)n Simple_repeat Simple_repeat 1 74 0 365 349 69 0 chr13 91560464 91560653 -28184245 - MIR SINE MIR -49 213 12 22 0 0 0 chr13 91562041 91562063 -28182835 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 91562268 91562296 -28182602 + AT_rich Low_complexity Low_complexity 1 28 0 529 217 11 0 chr13 91563429 91563521 -28181377 - FRAM SINE Alu -63 113 21 1810 89 16 0 chr13 91563632 91563890 -28181008 - L1MA3 LINE L1 0 6305 6044 35 41 0 0 chr13 91563958 91564007 -28180891 + AT_rich Low_complexity Low_complexity 1 49 0 1872 157 40 3 chr13 91564211 91564586 -28180312 + L1MA4 LINE L1 5911 6299 -1 25 31 0 0 chr13 91564796 91564828 -28180070 + AT_rich Low_complexity Low_complexity 1 32 0 2062 93 0 35 chr13 91565009 91565347 -28179551 - AluSg SINE Alu 0 330 3 210 381 103 0 chr13 91566049 91566146 -28178752 - L2 LINE L2 -3 3269 3163 4248 190 18 16 chr13 91566275 91567197 -28177701 + L1MA10 LINE L1 5409 6332 -2 257 258 54 21 chr13 91567409 91567502 -28177396 + MIR SINE MIR 166 261 -1 518 226 22 10 chr13 91567526 91567685 -28177213 - L1MC/D LINE L1 -727 5443 5283 627 294 123 24 chr13 91567909 91568067 -28176831 - L1MC/D LINE L1 -1353 4793 4652 306 0 0 0 chr13 91568067 91568101 -28176797 + (CA)n Simple_repeat Simple_repeat 2 35 0 * 339 25 0 0 chr13 91568100 91568140 -28176758 + (TC)n Simple_repeat Simple_repeat 2 41 0 627 294 123 24 chr13 91568101 91568613 -28176285 - L1MC/D LINE L1 -1494 4652 4099 407 299 145 20 chr13 91568668 91569026 -28175872 - L1MC/D LINE L1 -2831 3315 2913 25 0 0 0 chr13 91570095 91570120 -28174778 + AT_rich Low_complexity Low_complexity 1 25 0 272 238 12 24 chr13 91570706 91570790 -28174108 + A-rich Low_complexity Low_complexity 5 87 0 214 325 12 48 chr13 91570899 91570982 -28173916 - L2 LINE L2 -19 3253 3174 985 289 93 32 chr13 91571068 91571564 -28173334 - MLT1E2 LTR MaLR -72 481 1 285 368 71 26 chr13 91571809 91572149 -28172749 - L2 LINE L2 -520 2794 2440 323 252 24 57 chr13 91572658 91572781 -28172117 + L1MC3 LINE L1 6723 6831 -954 22 0 0 0 chr13 91572881 91572903 -28171995 + AT_rich Low_complexity Low_complexity 1 22 0 208 286 0 0 chr13 91573095 91573144 -28171754 + (TA)n Simple_repeat Simple_repeat 2 50 0 1307 226 65 38 chr13 91574454 91574901 -28169997 + LTR40b LTR ERVL 4 462 0 1281 228 107 24 chr13 91574902 91575275 -28169623 + HERVL40 LTR ERVL 1 404 -5126 189 324 14 0 chr13 91575846 91575917 -28168981 + L2 LINE L2 2414 2485 -829 194 346 10 30 chr13 91575956 91576057 -28168841 + L2 LINE L2 2577 2675 -639 1757 168 29 47 chr13 91576062 91576442 -28168456 - THE1C LTR MaLR -2 373 1 227 157 0 78 chr13 91576453 91576504 -28168394 + A-rich Low_complexity Low_complexity 2 48 0 260 125 25 50 chr13 91577130 91577210 -28167688 + (TAAA)n Simple_repeat Simple_repeat 4 81 0 21 57 0 0 chr13 91578337 91578372 -28166526 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr13 91579114 91579151 -28165747 + AT_rich Low_complexity Low_complexity 1 37 0 244 374 83 13 chr13 91579657 91579887 -28165011 - L2 LINE L2 -686 2628 2383 2950 219 80 77 chr13 91580403 91581525 -28163373 - LTR28 LTR ERV1 0 1726 1 27 49 0 0 chr13 91581880 91581921 -28162977 + AT_rich Low_complexity Low_complexity 1 41 0 1990 131 61 6 chr13 91582206 91582550 -28162348 + L1PA13 LINE L1 5746 6108 -55 3238 193 49 0 chr13 91582552 91583241 -28161657 - L1 LINE L1 -886 5260 4538 283 222 0 14 chr13 91583239 91583311 -28161587 + L1 LINE L1 4481 4551 -1595 * 24 0 0 0 chr13 91583697 91583721 -28161177 + AT_rich Low_complexity Low_complexity 1 24 0 1176 272 84 13 chr13 91584549 91585013 -28159885 - MLT1D LTR MaLR 0 505 9 237 187 93 13 chr13 91585213 91585288 -28159610 - HAL1 LINE L1 -2319 188 108 4543 180 54 17 chr13 91585467 91586566 -28158332 - L1MA8 LINE L1 -4 6287 5148 1656 144 56 44 chr13 91586591 91586757 -28158141 + THE1C LTR MaLR 1 164 -211 1915 49 12 0 chr13 91586757 91587000 -28157898 - L1PA5 LINE L1 0 6154 5909 1656 144 56 44 chr13 91587000 91587255 -28157643 + THE1C LTR MaLR 164 374 -1 1060 259 12 26 chr13 91587255 91587599 -28157299 - L1MA8 LINE L1 -1021 5125 4787 295 242 21 32 chr13 91587665 91587760 -28157138 - L1MD2 LINE L1 0 6359 6266 * 1452 316 50 15 chr13 91587751 91588356 -28156542 - L1MDa LINE L1 -5814 726 101 34 0 0 0 chr13 91589488 91589522 -28155376 + AT_rich Low_complexity Low_complexity 1 34 0 6101 173 29 22 chr13 91589820 91591009 -28153889 + Tigger2 DNA MER2_type 3 1200 -1518 5889 165 34 5 chr13 91591007 91592065 -28152833 + Tigger2 DNA MER2_type 1630 2718 0 * 24 0 0 0 chr13 91592078 91592102 -28152796 + AT_rich Low_complexity Low_complexity 1 24 0 222 37 0 0 chr13 91593648 91593675 -28151223 + (TTG)n Simple_repeat Simple_repeat 1 27 0 512 136 0 0 chr13 91593821 91593935 -28150963 - Alu SINE Alu 0 326 213 1478 210 14 0 chr13 91593947 91594233 -28150665 - AluJb SINE Alu -12 300 11 213 159 0 0 chr13 91595742 91595786 -28149112 + (CA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr13 91596508 91596531 -28148367 + AT_rich Low_complexity Low_complexity 1 23 0 467 252 47 39 chr13 91597139 91597373 -28147525 + MER106A DNA MER1_type 1 236 0 817 249 83 28 chr13 91597621 91597910 -28146988 + MLT1A1 LTR MaLR 1 305 -60 1702 109 30 15 chr13 91597913 91598180 -28146718 + AluSq SINE Alu 4 274 -39 1307 126 39 24 chr13 91598210 91598417 -28146481 - AluJo SINE Alu -87 225 16 369 146 9 0 chr13 91598417 91598481 -28146417 + MLT1A1 LTR MaLR 298 396 0 316 226 22 28 chr13 91598909 91599090 -28145808 + (TA)n Simple_repeat Simple_repeat 1 180 0 814 233 0 6 chr13 91599108 91599267 -28145631 - FAM SINE Alu -17 158 1 209 141 62 31 chr13 91599290 91599354 -28145544 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 28 61 0 0 chr13 91599671 91599720 -28145178 + AT_rich Low_complexity Low_complexity 1 49 0 978 134 0 7 chr13 91599869 91600018 -28144880 - AluSc SINE Alu -75 234 87 2493 168 188 13 chr13 91600081 91600683 -28144215 + MER39 LTR ERV1 1 707 0 25 31 0 0 chr13 91602044 91602076 -28142822 + AT_rich Low_complexity Low_complexity 1 32 0 791 344 30 21 chr13 91602292 91602664 -28142234 + LTR16A LTR ERVL 69 443 -7 273 380 33 8 chr13 91602920 91603041 -28141857 + LTR67 LTR ERVL 36 159 -398 234 361 56 10 chr13 91604364 91604562 -28140336 - MIR SINE MIR -16 246 38 204 40 0 0 chr13 91604567 91604592 -28140306 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 341 252 10 0 chr13 91604605 91604708 -28140190 + (TA)n Simple_repeat Simple_repeat 1 104 0 867 283 57 57 chr13 91605320 91605987 -28138911 - L1MC5 LINE L1 -736 7225 6609 180 322 152 28 chr13 91606822 91607033 -28137865 + L2 LINE L2 2625 2861 -453 22 70 0 0 chr13 91607324 91607367 -28137531 + AT_rich Low_complexity Low_complexity 1 43 0 197 348 45 11 chr13 91607785 91607874 -28137024 - MIR SINE MIR -87 121 30 1442 190 58 52 chr13 91608419 91608782 -28136116 + MLT1A1 LTR MaLR 1 365 0 31 0 0 0 chr13 91609065 91609096 -28135802 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 91610082 91610108 -28134790 + AT_rich Low_complexity Low_complexity 1 26 0 429 277 9 9 chr13 91610453 91610565 -28134333 + L2 LINE L2 3201 3312 -1 542 250 43 0 chr13 91611435 91611599 -28133299 - LTR33A LTR ERVL 0 523 353 433 348 22 4 chr13 91612082 91612309 -28132589 - L1M4 LINE L1 -1988 4158 3928 300 293 110 24 chr13 91612661 91613169 -28131729 - L1M4 LINE L1 -2646 3500 2949 650 206 100 6 chr13 91613222 91613402 -28131496 + MER3 DNA MER1_type 12 208 -1 503 319 30 51 chr13 91613487 91613722 -28131176 - L2 LINE L2 -1636 1678 1449 480 133 0 0 chr13 91614937 91615020 -28129878 + (GA)n Simple_repeat Simple_repeat 2 84 0 591 304 133 23 chr13 91615090 91615399 -28129499 - L2 LINE L2 -1882 1432 1090 3553 92 53 13 chr13 91617873 91618403 -28126495 - L1MA2 LINE L1 -293 7430 6880 29 78 0 0 chr13 91618412 91618476 -28126422 + AT_rich Low_complexity Low_complexity 1 64 0 198 0 0 0 chr13 91618504 91618526 -28126372 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1339 169 20 13 chr13 91618545 91619166 -28125732 - L1MA2 LINE L1 -743 6822 6093 * 10231 127 35 63 chr13 91619161 91619635 -28125263 - L1MA2 LINE L1 -4038 3527 3041 333 0 0 0 chr13 91619635 91619672 -28125226 + (TG)n Simple_repeat Simple_repeat 2 38 0 10231 127 35 63 chr13 91619672 91620233 -28124665 - L1MA2 LINE L1 -4524 3041 2466 1923 125 0 4 chr13 91620233 91620512 -28124386 - AluSx SINE Alu -3 309 32 10231 127 35 63 chr13 91620512 91621453 -28123445 - L1MA2 LINE L1 -5099 2466 1605 3595 179 16 21 chr13 91621446 91622429 -28122469 - L1M1 LINE L1 -698 5607 4633 * 2561 99 0 3 chr13 91622465 91622820 -28122078 + L1PA7 LINE L1 5799 6152 -2 1603 151 55 0 chr13 91623077 91623349 -28121549 - AluSx SINE Alu -25 287 1 389 270 56 56 chr13 91623363 91623615 -28121283 + HAL1b LINE L1 711 962 -386 524 213 8 16 chr13 91623616 91623743 -28121155 - AluJb SINE Alu -11 301 176 1025 108 0 25 chr13 91623943 91624100 -28120798 - THE1-int LTR MaLR -556 1024 872 958 195 73 37 chr13 91624100 91624346 -28120552 - MER67C LTR ERV1 -315 395 141 5510 150 72 66 chr13 91624428 91625629 -28119269 - Tigger3b DNA MER2_type -22 1209 2 418 198 35 60 chr13 91625665 91625781 -28119117 - MER67C LTR ERV1 -594 116 4 576 360 131 17 chr13 91626008 91626699 -28118199 - L2 LINE L2 -9 3304 2529 237 224 17 0 chr13 91627206 91627264 -28117634 - L1MC5 LINE L1 -73 7888 7830 214 233 34 15 chr13 91627519 91627597 -28117301 + GA-rich Low_complexity Low_complexity 1 79 0 25 0 0 0 chr13 91628054 91628079 -28116819 + AT_rich Low_complexity Low_complexity 1 25 0 249 250 150 0 chr13 91628402 91628482 -28116416 + MLT1A2 LTR MaLR 1 92 -282 189 320 41 31 chr13 91628489 91628586 -28116312 - MIR SINE MIR -109 153 56 219 36 0 0 chr13 91629100 91629128 -28115770 + (TA)n Simple_repeat Simple_repeat 2 29 0 287 306 81 9 chr13 91629495 91629606 -28115292 + MLT1I LTR MaLR 43 161 -248 258 320 60 20 chr13 91629645 91629795 -28115103 + MLT1I LTR MaLR 252 407 -2 318 341 8 0 chr13 91629812 91629938 -28114960 + HAL1 LINE L1 603 729 -1778 302 336 54 29 chr13 91630136 91630413 -28114485 + HAL1 LINE L1 791 1074 -1433 519 283 23 5 chr13 91630446 91630665 -28114233 + HAL1 LINE L1 1142 1364 -1143 1366 222 156 8 chr13 91631292 91631689 -28113209 - MER31A LTR ERV1 -29 456 1 446 309 33 66 chr13 91631714 91632015 -28112883 + L1MEd LINE L1 608 898 -5221 1730 236 43 26 chr13 91632114 91632735 -28112163 - MER67B LTR ERV1 0 661 1 306 400 25 7 chr13 91632799 91633079 -28111819 + ERVL LTR ERVL 413 697 -5067 308 395 50 0 chr13 91633196 91633396 -28111502 + MLT1H LTR MaLR 138 347 -202 230 231 0 43 chr13 91633708 91633825 -28111073 + CT-rich Low_complexity Low_complexity 1 112 0 22 0 0 0 chr13 91634329 91634351 -28110547 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr13 91634515 91634558 -28110340 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr13 91634629 91634670 -28110228 + AT_rich Low_complexity Low_complexity 1 41 0 267 366 76 0 chr13 91635013 91635144 -28109754 - L2 LINE L2 -17 3255 3115 2023 127 10 10 chr13 91635522 91635822 -28109076 + AluSq SINE Alu 1 300 -13 265 231 43 94 chr13 91635889 91636006 -28108892 - MIR3 SINE MIR -11 197 87 229 353 42 54 chr13 91637237 91637404 -28107494 + L2 LINE L2 2545 2709 -605 1347 203 19 8 chr13 91637779 91638035 -28106863 - LTR57 LTR ERVL -7 404 146 798 142 196 0 chr13 91638078 91638226 -28106672 - LTR57 LTR ERVL -234 177 1 403 230 48 73 chr13 91638299 91638464 -28106434 + L2 LINE L2 3143 3303 -10 2272 203 40 5 chr13 91639504 91640447 -28104451 + Tigger6a DNA MER2_type 15 1072 -11 333 296 30 30 chr13 91640746 91640881 -28104017 + MIR SINE MIR 96 230 -32 185 286 98 94 chr13 91641424 91641669 -28103229 - L2 LINE L2 -555 2759 2514 21 0 0 0 chr13 91643456 91643477 -28101421 + AT_rich Low_complexity Low_complexity 1 21 0 880 277 104 70 chr13 91644725 91645194 -28099704 + LTR40a LTR ERVL 20 504 -15 24 0 0 0 chr13 91646197 91646221 -28098677 + AT_rich Low_complexity Low_complexity 1 24 0 2204 105 0 13 chr13 91646480 91646793 -28098105 - AluSc SINE Alu 0 309 1 43 35 0 0 chr13 91647717 91647774 -28097124 + AT_rich Low_complexity Low_complexity 1 57 0 1039 172 9 32 chr13 91648269 91648394 -28096504 - L1PA16 LINE L1 -1 6165 6046 2216 117 14 6 chr13 91648394 91648745 -28096153 - THE1A LTR MaLR 0 355 2 1039 172 9 32 chr13 91648745 91648840 -28096058 - L1PA16 LINE L1 -120 6046 5950 6307 193 20 9 chr13 91648911 91650985 -28093913 - L1PA16 LINE L1 -238 5928 3829 294 296 165 29 chr13 91651257 91651463 -28093435 + MIR SINE MIR 29 262 0 780 134 0 52 chr13 91651558 91651692 -28093206 + FLAM_C SINE Alu 1 127 -16 1685 227 0 27 chr13 91652136 91652537 -28092361 + MLT1B LTR MaLR 1 390 0 457 259 66 36 chr13 91653661 91653827 -28091071 - MIR SINE MIR -74 188 18 592 315 106 58 chr13 91654504 91655127 -28089771 + L2 LINE L2 2612 3262 -51 235 330 11 0 chr13 91655143 91655231 -28089667 + MER69A DNA AcHobo 2 90 -87 2414 150 3 0 chr13 91655275 91655649 -28089249 + THE1C LTR MaLR 1 375 0 647 146 25 3 chr13 91655651 91655774 -28089124 + THE1C-int LTR MaLR 3 130 -1538 348 260 144 10 chr13 91656418 91656522 -28088376 - L2 LINE L2 -1 3312 3195 554 250 8 0 chr13 91656598 91656726 -28088172 - L2 LINE L2 -749 2565 2437 198 0 0 0 chr13 91656728 91656750 -28088148 + (T)n Simple_repeat Simple_repeat 1 22 0 197 184 0 0 chr13 91656761 91656799 -28088099 - L2 LINE L2 -935 2379 2342 2121 176 19 29 chr13 91657268 91657683 -28087215 - MSTA LTR MaLR -17 411 1 1539 283 31 25 chr13 91657780 91658385 -28086513 + L1MCa LINE L1 6 614 -5812 2259 116 3 0 chr13 91658488 91658799 -28086099 - AluSp SINE Alu -1 312 1 519 199 14 21 chr13 91658813 91658954 -28085944 + L1MCa LINE L1 2738 2877 -3549 327 130 0 0 chr13 91658955 91659009 -28085889 + (CA)n Simple_repeat Simple_repeat 1 54 0 7722 254 40 14 chr13 91659106 91660852 -28084046 + L1MCa LINE L1 2892 4591 -1835 1940 131 0 3 chr13 91660852 91661180 -28083718 + AluSx SINE Alu 1 327 0 7722 254 40 14 chr13 91661180 91661623 -28083275 + L1MCa LINE L1 4591 5021 -1405 7911 79 21 0 chr13 91661623 91662672 -28082226 - MER11C LTR ERVK 0 1071 1 7722 254 40 14 chr13 91662672 91663096 -28081802 + L1MCa LINE L1 5021 5575 -851 2183 146 41 3 chr13 91663096 91663465 -28081433 - MER57B LTR ERV1 -51 383 1 2084 94 63 0 chr13 91664070 91664356 -28080542 - AluSg SINE Alu -6 304 1 421 292 67 33 chr13 91664496 91664732 -28080166 - MIR SINE MIR -4 258 17 1034 221 22 29 chr13 91666810 91667086 -28077812 - MLT1C LTR MaLR -7 460 187 1065 221 93 51 chr13 91667101 91667554 -28077344 - MER31A LTR ERV1 0 485 1 482 234 62 7 chr13 91667554 91667698 -28077200 - MLT1C LTR MaLR -236 154 3 24 0 0 0 chr13 91668470 91668494 -28076404 + AT_rich Low_complexity Low_complexity 1 24 0 1458 188 8 16 chr13 91668697 91669005 -28075893 - L1MC2 LINE L1 -11 7761 6137 304 335 154 16 chr13 91669038 91669220 -28075678 - MIR SINE MIR -36 226 20 715 175 75 115 chr13 91669306 91669506 -28075392 - MER20 DNA MER1_type -3 216 25 2511 155 12 0 chr13 91670893 91671299 -28073599 - LOR1b LTR ERV1 0 461 51 218 32 32 0 chr13 91671300 91671331 -28073567 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 28 0 0 0 chr13 91672153 91672181 -28072717 + AT_rich Low_complexity Low_complexity 1 28 0 1257 220 35 53 chr13 91672367 91672763 -28072135 + MLT1B LTR MaLR 1 389 -1 181 281 230 7 chr13 91672767 91672906 -28071992 + MIR SINE MIR 93 262 0 4195 120 61 50 chr13 91673027 91673803 -28071095 + LTR1 LTR ERV1 2 785 0 1480 219 84 39 chr13 91674027 91674492 -28070406 - MER66B LTR ERV1 0 486 1 13225 138 27 5 chr13 91674492 91676577 -28068321 - MER66B-int LTR ERV1 -1 6675 4603 216 268 49 113 chr13 91676598 91676740 -28068158 - MIR3 SINE MIR -61 147 15 805 300 4 22 chr13 91676740 91676970 -28067928 + LOR1-int LTR ERV1 6872 7097 -1023 9690 228 94 80 chr13 91676989 91680711 -28064187 - MER66B-int LTR ERV1 -2261 4415 626 1758 174 122 13 chr13 91680711 91681097 -28063801 + MSTA LTR MaLR 1 428 0 9690 228 94 80 chr13 91681097 91681437 -28063461 - MER66B-int LTR ERV1 -6050 626 293 323 317 57 8 chr13 91681484 91681607 -28063291 - MER66B-int LTR ERV1 -6280 396 268 * 837 235 11 6 chr13 91681593 91681776 -28063122 - MER66B-int LTR ERV1 -6278 398 215 2102 187 57 38 chr13 91681984 91682461 -28062437 - MER66B LTR ERV1 0 486 1 23 33 0 0 chr13 91682536 91682566 -28062332 + AT_rich Low_complexity Low_complexity 1 30 0 462 254 124 38 chr13 91683592 91683777 -28061121 + MIR SINE MIR 41 241 -21 830 314 166 5 chr13 91683824 91684222 -28060676 + L2 LINE L2 2821 3282 -31 204 284 158 79 chr13 91684678 91684733 -28060165 - L2 LINE L2 -457 2857 2808 2377 92 3 0 chr13 91684733 91685039 -28059859 - AluSp SINE Alu -6 307 1 204 284 158 79 chr13 91685039 91685237 -28059661 - L2 LINE L2 -506 2808 2584 237 339 161 0 chr13 91685372 91685490 -28059408 - MIR3 SINE MIR -6 202 66 2033 234 75 27 chr13 91685515 91686033 -28058865 - MLT2B3 LTR ERVL -11 543 1 16033 203 57 11 chr13 91686033 91691468 -28053430 - ERVL-B3 LTR ERVL -7 5757 3 1346 220 106 39 chr13 91691469 91691883 -28053015 - MSTB2 LTR MaLR -15 442 1 2806 253 113 79 chr13 91691883 91693479 -28051419 - MSTB2-int LTR MaLR 0 1651 1 1360 203 141 44 chr13 91693479 91693884 -28051014 - MSTB2 LTR MaLR -13 444 1 590 240 65 59 chr13 91694736 91695073 -28049825 - L1MC5 LINE L1 -308 7653 7315 21 0 0 0 chr13 91696347 91696368 -28048530 + AT_rich Low_complexity Low_complexity 1 21 0 313 257 243 21 chr13 91696499 91696643 -28048255 - MER5B DNA MER1_type -1 177 2 24 0 0 0 chr13 91697419 91697443 -28047455 + AT_rich Low_complexity Low_complexity 1 24 0 1352 193 4 4 chr13 91697459 91697698 -28047200 + MER8 DNA MER2_type 1 239 0 226 143 54 0 chr13 91698710 91698766 -28046132 + (TA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr13 91698905 91698933 -28045965 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr13 91701229 91701256 -28043642 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 584 350 11 44 chr13 91701497 91701863 -28043035 - MLT1H LTR MaLR -32 517 164 2177 192 31 7 chr13 91701863 91702346 -28042552 + MER89 LTR ERV1 1 559 0 474 221 136 7 chr13 91702355 91702495 -28042403 - MLT1H LTR MaLR -391 158 1 288 77 0 0 chr13 91703864 91703903 -28040995 + (TG)n Simple_repeat Simple_repeat 2 40 0 273 119 0 0 chr13 91703959 91704001 -28040897 + (TA)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr13 91704686 91704711 -28040187 + AT_rich Low_complexity Low_complexity 1 25 0 1056 176 0 6 chr13 91704977 91705159 -28039739 + AluJb SINE Alu 1 181 -131 33 56 0 0 chr13 91705618 91705672 -28039226 + AT_rich Low_complexity Low_complexity 1 54 0 253 205 13 39 chr13 91707165 91707243 -28037655 + MER87 LTR ERV1 430 505 -36 305 214 233 10 chr13 91707339 91707442 -28037456 + L2 LINE L2 2921 3046 -267 2500 160 5 0 chr13 91707645 91708039 -28036859 + MER57A LTR ERV1 8 403 0 1805 208 148 6 chr13 91708389 91708890 -28036008 + LTR49 LTR ERV1 1 572 -23 1834 170 42 67 chr13 91708901 91709455 -28035443 - MLT2A2 LTR ERVL 0 554 1 23 0 0 0 chr13 91709487 91709510 -28035388 + AT_rich Low_complexity Low_complexity 1 23 0 1989 225 33 36 chr13 91709701 91710239 -28034659 - MER41B LTR ERV1 0 601 100 230 281 10 52 chr13 91710258 91710354 -28034544 + MIR SINE MIR 54 145 -117 3529 231 60 15 chr13 91710810 91711827 -28033071 - Charlie1a DNA MER1_type 0 1455 392 1810 208 62 26 chr13 91711827 91712280 -28032618 + MER67C LTR ERV1 3 471 -239 1816 250 105 31 chr13 91712286 91712961 -28031937 + MER50 LTR ERV1 10 734 0 1076 165 37 41 chr13 91712961 91713086 -28031812 + MER67C LTR ERV1 468 593 -117 2217 95 0 3 chr13 91713086 91713381 -28031517 - AluSg SINE Alu -16 294 1 1076 165 37 41 chr13 91713381 91713498 -28031400 + MER67C LTR ERV1 593 709 -1 1105 264 24 9 chr13 91713511 91713841 -28031057 - Charlie1a DNA MER1_type -1079 376 42 23 33 0 0 chr13 91714989 91715019 -28029879 + AT_rich Low_complexity Low_complexity 1 30 0 843 174 100 74 chr13 91715586 91715724 -28029174 - MLT2B1 LTR ERVL -284 236 88 2179 124 3 0 chr13 91715724 91716023 -28028875 + AluSg SINE Alu 1 300 -10 843 174 100 74 chr13 91716023 91716114 -28028784 - MLT2B1 LTR ERVL -432 88 1 288 0 0 0 chr13 91716161 91716193 -28028705 + (TA)n Simple_repeat Simple_repeat 2 33 0 1712 122 4 0 chr13 91716193 91716430 -28028468 + AluSg SINE Alu 42 279 -31 493 0 0 17 chr13 91716477 91716537 -28028361 + MADE1 DNA Mariner 22 80 0 4866 217 58 14 chr13 91716949 91718139 -28026759 + L1MC3 LINE L1 6374 7615 -170 1370 195 4 4 chr13 91719337 91719594 -28025304 - AluJb SINE Alu -55 257 1 862 199 0 23 chr13 91719748 91719919 -28024979 - AluJo SINE Alu -79 233 67 15970 46 5 1 chr13 91720537 91723325 -28021573 - L1PA5 LINE L1 -8 6146 3351 382 332 79 5 chr13 91723337 91723524 -28021374 - L1MEc LINE L1 -4137 2259 2055 969 241 5 14 chr13 91723524 91723744 -28021154 + MER20 DNA MER1_type 1 218 -1 382 332 79 5 chr13 91723744 91723758 -28021140 - L1MEc LINE L1 -4341 2055 2043 758 288 78 46 chr13 91723909 91724648 -28020250 - L1MEc LINE L1 -4402 1994 1232 1453 165 8 12 chr13 91724689 91724944 -28019954 + THE1C LTR MaLR 1 254 -121 2286 124 52 0 chr13 91724944 91725290 -28019608 + THE1B LTR MaLR 1 364 0 1576 152 17 10 chr13 91725318 91725608 -28019290 - L1PA13 LINE L1 -19 6144 5853 2302 208 22 10 chr13 91725608 91726104 -28018794 - L1PA13 LINE L1 -930 5216 4715 * 2567 186 37 4 chr13 91726094 91726579 -28018319 + L1P LINE L1 3719 4219 -1927 1395 199 20 0 chr13 91726580 91726876 -28018022 + L1P LINE L1 4429 4730 -1416 491 169 0 0 chr13 91726902 91726991 -28017907 - L1MEc LINE L1 -5233 1163 1075 26 30 0 0 chr13 91726991 91727024 -28017874 + AT_rich Low_complexity Low_complexity 1 33 0 456 318 45 55 chr13 91727264 91727572 -28017326 - L1MEc LINE L1 -5915 481 177 * 6476 8 0 0 chr13 91727571 91728300 -28016598 - L1HS LINE L1 -1 6154 5426 * 9747 24 0 0 chr13 91728298 91729470 -28015428 + L1P LINE L1 2635 3806 -2340 207 143 41 0 chr13 91729807 91729856 -28015042 + (CA)n Simple_repeat Simple_repeat 2 52 0 1115 131 16 37 chr13 91729923 91730114 -28014784 + THE1B LTR MaLR 178 364 0 307 214 225 0 chr13 91730154 91730243 -28014655 - L1MA10 LINE L1 -13 6321 6213 605 324 110 5 chr13 91730841 91731060 -28013838 + L3 LINE CR1 427 668 -909 249 98 0 0 chr13 91731689 91731730 -28013168 + (TG)n Simple_repeat Simple_repeat 1 41 0 312 260 42 0 chr13 91732601 91732697 -28012201 + CT-rich Low_complexity Low_complexity 3 102 0 211 362 117 16 chr13 91733408 91733596 -28011302 + L3 LINE CR1 1078 1284 -293 369 0 0 0 chr13 91733682 91733723 -28011175 + (TA)n Simple_repeat Simple_repeat 2 42 0 420 288 54 44 chr13 91734141 91734346 -28010552 + MIR SINE MIR 56 262 0 22 70 0 0 chr13 91734761 91734804 -28010094 + AT_rich Low_complexity Low_complexity 1 43 0 1800 143 0 7 chr13 91735725 91736022 -28008876 - AluSx SINE Alu 0 305 11 1449 189 80 3 chr13 91736766 91737078 -28007820 - MER67C LTR ERV1 -308 402 67 382 221 0 0 chr13 91737120 91737206 -28007692 - MER67D LTR ERV1 -428 86 1 306 323 10 0 chr13 91738039 91738135 -28006763 - L2 LINE L2 -2 3311 3215 3571 33 0 0 chr13 91738917 91739345 -28005553 + L1PA4 LINE L1 5728 6155 0 228 149 0 0 chr13 91739360 91739407 -28005491 + (A)n Simple_repeat Simple_repeat 1 47 0 422 310 53 18 chr13 91790430 91790601 -27954297 + MIR SINE MIR 4 180 -82 2334 62 3 16 chr13 91790668 91790973 -27953925 - AluY SINE Alu -10 301 1 2023 172 70 5 chr13 91792159 91792561 -27952337 + MSTA LTR MaLR 1 428 0 8304 184 34 9 chr13 91792561 91794002 -27950896 + MSTA-int LTR MaLR 1 1489 -162 185 83 28 0 chr13 91794002 91794038 -27950860 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 8304 184 34 9 chr13 91794038 91794206 -27950692 + MSTA-int LTR MaLR 1489 1651 0 1952 182 54 5 chr13 91794208 91794614 -27950284 + MSTA LTR MaLR 3 428 0 240 339 16 0 chr13 91794651 91794775 -27950123 + L1ME LINE L1 5701 5826 -336 235 280 105 63 chr13 91795001 91795144 -27949754 + MLT1J1 LTR MaLR 1 149 -297 357 301 115 29 chr13 91797716 91797925 -27946973 + MIR SINE MIR 15 241 -21 36 23 0 0 chr13 91797963 91798006 -27946892 + AT_rich Low_complexity Low_complexity 1 43 0 4642 193 8 32 chr13 91798804 91800251 -27944647 + L1PA15 LINE L1 4736 6159 -6 468 51 0 0 chr13 91800415 91800474 -27944424 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 2007 98 6 62 chr13 91802173 91802498 -27942400 + AluSx SINE Alu 1 307 -5 1246 267 93 22 chr13 91802844 91803350 -27941548 - L1MC3 LINE L1 -1552 6233 5692 469 231 196 17 chr13 91803376 91803549 -27941349 - L1MC3 LINE L1 -2246 5539 5336 960 209 38 0 chr13 91803995 91804206 -27940692 - L1MA9 LINE L1 -198 6114 5896 259 100 0 0 chr13 91804200 91804240 -27940658 + L1MA9 LINE L1 6273 6312 0 * 936 243 80 80 chr13 91804818 91805218 -27939680 - MLT1E2 LTR MaLR -22 604 205 324 0 0 0 chr13 91806098 91806134 -27938764 + (TG)n Simple_repeat Simple_repeat 1 36 0 444 51 0 0 chr13 91806134 91806193 -27938705 + (TA)n Simple_repeat Simple_repeat 1 59 0 2644 211 11 4 chr13 91806970 91807515 -27937383 + MER44D DNA MER2_type 1 604 -1 535 100 0 0 chr13 91807639 91807719 -27937179 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr13 91807875 91807903 -27936995 + AT_rich Low_complexity Low_complexity 1 28 0 387 41 0 0 chr13 91808627 91808676 -27936222 + (GA)n Simple_repeat Simple_repeat 2 50 0 29 28 0 0 chr13 91808893 91808929 -27935969 + AT_rich Low_complexity Low_complexity 1 36 0 213 424 11 0 chr13 91809493 91809585 -27935313 - L3 LINE CR1 -71 1506 1414 285 298 89 32 chr13 91812125 91812249 -27932649 + L2 LINE L2 3183 3313 0 1074 274 35 13 chr13 91812433 91812747 -27932151 - MLT1A1 LTR MaLR -40 325 5 2153 127 0 0 chr13 91813112 91813411 -27931487 - AluSx SINE Alu -13 299 1 942 243 173 37 chr13 91816249 91816653 -27928245 - L1ME2 LINE L1 -151 6013 5555 704 296 36 10 chr13 91816873 91817300 -27927598 - L1MDa LINE L1 -4558 1703 1224 705 289 107 14 chr13 91817310 91817804 -27927094 - L1MDa LINE L1 -5031 1039 500 403 316 60 43 chr13 91817877 91818178 -27926720 - L1MDa LINE L1 -5753 317 12 27 49 0 0 chr13 91819145 91819186 -27925712 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 30 chr13 91819592 91819608 -27925290 + AT_rich Low_complexity Low_complexity 1 16 -16 3282 112 18 6 chr13 91819608 91820115 -27924783 + LTR10D LTR ERV1 1 513 0 22 0 0 30 chr13 91820115 91820131 -27924767 + AT_rich Low_complexity Low_complexity 16 32 0 2149 104 0 10 chr13 91820131 91820428 -27924470 - AluSx SINE Alu -18 294 1 725 169 96 40 chr13 91820607 91820784 -27924114 + L1MA9 LINE L1 6126 6312 0 195 42 0 0 chr13 91820837 91820861 -27924037 + (TA)n Simple_repeat Simple_repeat 2 25 0 2804 154 22 4 chr13 91822387 91822875 -27922023 - LOR1a LTR ERV1 0 497 1 1699 219 50 33 chr13 91823817 91823900 -27920998 + L1M1 LINE L1 13 93 -7472 348 64 0 0 chr13 91823900 91823947 -27920951 + (CA)n Simple_repeat Simple_repeat 2 48 0 1699 219 50 33 chr13 91823947 91824283 -27920615 + L1M1 LINE L1 93 439 -7126 766 168 0 8 chr13 91824293 91824418 -27920480 - AluSq/x SINE Alu -184 129 6 1553 152 16 0 chr13 91824447 91824691 -27920207 - THE1A LTR MaLR -107 248 1 21 0 0 0 chr13 91825876 91825897 -27919001 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 91826441 91826463 -27918435 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr13 91826617 91826653 -27918245 + (CA)n Simple_repeat Simple_repeat 1 36 0 451 62 0 16 chr13 91827260 91827324 -27917574 + Alu SINE Alu 232 294 -15 4556 111 18 5 chr13 91827596 91828265 -27916633 - L1PA11 LINE L1 -3 6171 5494 709 182 124 27 chr13 91828265 91828538 -27916360 + LTR18A LTR ERVL 1 390 -224 1538 211 116 13 chr13 91828575 91828955 -27915943 - L1PA12 LINE L1 -6952 629 211 2089 259 47 29 chr13 91829096 91829605 -27915293 + L1MD2 LINE L1 5605 6132 -227 216 0 0 0 chr13 91829605 91829629 -27915269 + (TTATG)n Simple_repeat Simple_repeat 3 26 0 2089 259 47 29 chr13 91829629 91829836 -27915062 + L1MD2 LINE L1 6132 6334 -25 324 303 0 87 chr13 91830332 91830517 -27914381 - L2 LINE L2 -32 3281 3113 405 240 73 0 chr13 91830527 91830623 -27914275 - L1PA12 LINE L1 -7026 555 453 661 188 130 0 chr13 91830652 91830806 -27914092 + L1PA12 LINE L1 217 390 -7191 191 320 70 55 chr13 91830851 91830979 -27913919 - L2 LINE L2 -229 3043 2914 21 0 0 0 chr13 91831761 91831782 -27913116 + AT_rich Low_complexity Low_complexity 1 21 0 2347 56 10 13 chr13 91831841 91832143 -27912755 - AluY SINE Alu -3 308 8 358 385 59 35 chr13 91832157 91832580 -27912318 - L2 LINE L2 -1717 1597 1165 663 302 81 10 chr13 91832647 91832945 -27911953 + MLT1J1 LTR MaLR 1 319 -127 833 237 58 0 chr13 91833020 91833227 -27911671 - MER58A DNA MER1_type -4 220 2 807 10 0 20 chr13 91833300 91833399 -27911499 - L1PA4 LINE L1 -6 6149 6053 2899 119 258 7 chr13 91833717 91834383 -27910515 - pTR5 LTR ERV1 0 2468 1524 989 198 122 63 chr13 91834506 91834966 -27909932 - pTR5 LTR ERV1 -1211 1227 741 262 312 21 0 chr13 91835102 91835243 -27909655 + (TA)n Simple_repeat Simple_repeat 1 144 0 24 32 0 0 chr13 91835732 91835763 -27909135 + AT_rich Low_complexity Low_complexity 1 31 0 31 26 0 0 chr13 91836174 91836212 -27908686 + AT_rich Low_complexity Low_complexity 1 38 0 654 151 22 28 chr13 91836574 91836753 -27908145 + GA-rich Low_complexity Low_complexity 3 180 0 875 133 14 12 chr13 91836767 91837273 -27907625 + GA-rich Low_complexity Low_complexity 1 507 0 2330 73 0 20 chr13 91837729 91838031 -27906867 - AluSp SINE Alu -17 296 1 1926 91 0 7 chr13 91838486 91838762 -27906136 + AluY SINE Alu 37 310 -1 25 31 0 0 chr13 91839570 91839602 -27905296 + AT_rich Low_complexity Low_complexity 1 32 0 2777 0 0 0 chr13 91840042 91840343 -27904555 - AluYa5 SINE Alu -10 301 1 35 41 0 0 chr13 91840452 91840501 -27904397 + AT_rich Low_complexity Low_complexity 1 49 0 181 386 0 14 chr13 91840723 91840793 -27904105 - L2 LINE L2 -222 3050 2982 25 0 0 0 chr13 91841259 91841284 -27903614 + AT_rich Low_complexity Low_complexity 1 25 0 38 51 0 0 chr13 91842205 91842264 -27902634 + AT_rich Low_complexity Low_complexity 1 59 0 546 253 95 0 chr13 91842523 91842681 -27902217 + L1M1 LINE L1 10 182 -7383 25 31 0 0 chr13 91843045 91843077 -27901821 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr13 91843393 91843420 -27901478 + AT_rich Low_complexity Low_complexity 1 27 0 1114 215 33 39 chr13 91843729 91844064 -27900834 + L1MA7 LINE L1 5959 6291 0 3148 244 68 14 chr13 91844235 91845043 -27899855 + L1M1 LINE L1 12 863 -6702 3665 192 48 44 chr13 91845060 91845396 -27899502 + L1M1 LINE L1 2506 2839 -4726 186 43 0 0 chr13 91845396 91845419 -27899479 + (CA)n Simple_repeat Simple_repeat 1 23 0 3665 192 48 44 chr13 91845419 91846092 -27898806 + L1M1 LINE L1 2839 3520 -4045 6515 230 44 39 chr13 91846243 91848458 -27896440 + L1MA4 LINE L1 3281 5501 -2064 5035 162 62 7 chr13 91848454 91849030 -27895868 + L1MA4 LINE L1 6610 7153 -566 * 216 0 0 0 chr13 91849030 91849054 -27895844 + (TA)n Simple_repeat Simple_repeat 2 25 0 5035 162 62 7 chr13 91849054 91849526 -27895372 + L1MA4 LINE L1 7153 7713 -6 501 347 94 25 chr13 91849565 91850162 -27894736 + L1M4 LINE L1 4752 5389 -757 1604 213 127 0 chr13 91850177 91850586 -27894312 + LTR53 LTR ERVL 7 467 -52 447 100 0 0 chr13 91850774 91850844 -27894054 + (TG)n Simple_repeat Simple_repeat 1 70 0 22 88 0 0 chr13 91851828 91851885 -27893013 + AT_rich Low_complexity Low_complexity 1 57 0 258 105 0 0 chr13 91852381 91852419 -27892479 + (TG)n Simple_repeat Simple_repeat 1 38 0 220 267 153 23 chr13 91853100 91853276 -27891622 + L2 LINE L2 3113 3311 -2 3811 210 31 48 chr13 91853755 91854011 -27890887 - L1MC2 LINE L1 -9 6335 6076 2273 100 0 0 chr13 91854011 91854312 -27890586 - AluSx SINE Alu -11 301 1 3811 210 31 48 chr13 91854312 91854584 -27890314 - L1MC2 LINE L1 -268 6076 5801 2015 161 27 6 chr13 91854584 91854950 -27889948 - L1MA6 LINE L1 -7 6293 5920 3811 210 31 48 chr13 91854950 91855366 -27889532 - L1MC2 LINE L1 -543 5801 5406 210 37 0 0 chr13 91855421 91855448 -27889450 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr13 91856440 91856468 -27888430 + AT_rich Low_complexity Low_complexity 1 28 0 320 243 27 0 chr13 91856852 91856926 -27887972 + MLT1J LTR MaLR 100 175 -336 36 77 0 0 chr13 91856926 91857004 -27887894 + AT_rich Low_complexity Low_complexity 1 78 0 226 125 62 0 chr13 91857097 91857177 -27887721 + (TA)n Simple_repeat Simple_repeat 1 85 0 389 293 71 20 chr13 91857213 91857411 -27887487 + MLT1J LTR MaLR 280 487 -24 215 172 62 0 chr13 91857423 91857487 -27887411 + (TA)n Simple_repeat Simple_repeat 2 69 0 37 52 0 0 chr13 91857540 91857598 -27887300 + AT_rich Low_complexity Low_complexity 1 58 0 301 262 87 32 chr13 91860828 91860954 -27883944 + L1MEd LINE L1 1246 1378 -5038 283 119 0 0 chr13 91860956 91860998 -27883900 - MLT2C2 LTR ERVL 0 515 474 255 103 0 0 chr13 91861037 91861076 -27883822 + (TG)n Simple_repeat Simple_repeat 2 40 0 1658 210 76 25 chr13 91861145 91861540 -27883358 - MLT2C2 LTR ERVL -48 416 2 353 272 83 66 chr13 91861592 91861867 -27883031 + L1MEd LINE L1 1269 1534 -4892 242 304 14 61 chr13 91861871 91861918 -27882980 + L1MEd LINE L1 1685 1733 -4693 2112 112 7 3 chr13 91861918 91862221 -27882677 + AluY SINE Alu 1 304 -7 242 304 14 61 chr13 91862221 91862321 -27882577 + L1MEd LINE L1 1733 1825 -4601 184 186 34 0 chr13 91862475 91862534 -27882364 + (TA)n Simple_repeat Simple_repeat 2 62 0 730 222 80 55 chr13 91862562 91862927 -27881971 + L1MEd LINE L1 2942 3315 -3111 2192 176 47 2 chr13 91862955 91863363 -27881535 - MSTB LTR MaLR 0 426 1 27 29 0 0 chr13 91863363 91863397 -27881501 + AT_rich Low_complexity Low_complexity 1 34 0 2840 105 8 93 chr13 91863452 91863967 -27880931 + MER9 LTR ERVK 41 511 0 21 82 0 0 chr13 91864152 91864201 -27880697 + AT_rich Low_complexity Low_complexity 1 49 0 30 0 0 0 chr13 91864255 91864285 -27880613 + AT_rich Low_complexity Low_complexity 1 30 0 2728 195 65 19 chr13 91864435 91864592 -27880306 - L1MA10 LINE L1 -7 6327 6179 198 0 0 0 chr13 91864592 91864614 -27880284 + (TG)n Simple_repeat Simple_repeat 1 22 0 2728 195 65 19 chr13 91864614 91865082 -27879816 - L1MA10 LINE L1 -155 6179 5673 380 258 138 14 chr13 91865080 91865252 -27879646 + L1M1 LINE L1 5198 5347 -947 * 1479 96 0 0 chr13 91865252 91865439 -27879459 + AluSc SINE Alu 1 187 -122 380 258 138 14 chr13 91865439 91865565 -27879333 + L1M1 LINE L1 5347 5537 -757 254 192 19 0 chr13 91865618 91865670 -27879228 + L1ME3A LINE L1 5668 5720 -450 737 274 80 39 chr13 91865795 91866207 -27878691 + L1ME3A LINE L1 5742 6170 0 573 365 52 44 chr13 91867302 91867759 -27877139 - LTR16C LTR ERVL -30 461 1 24 53 0 0 chr13 91867854 91867892 -27877006 + AT_rich Low_complexity Low_complexity 1 38 0 316 284 0 0 chr13 91868050 91868145 -27876753 + L1MA10 LINE L1 6240 6334 0 2173 116 0 3 chr13 91868281 91868575 -27876323 - AluSx SINE Alu -15 297 5 239 137 0 20 chr13 91868980 91869031 -27875867 + (TA)n Simple_repeat Simple_repeat 2 51 0 4788 123 31 25 chr13 91869217 91870031 -27874867 - L1PA13 LINE L1 -23 6140 5322 22 0 0 0 chr13 91870576 91870598 -27874300 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 91870919 91870952 -27873946 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr13 91872081 91872108 -27872790 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 91872220 91872241 -27872657 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr13 91872524 91872582 -27872316 + AT_rich Low_complexity Low_complexity 1 58 0 807 234 84 5 chr13 91872732 91872946 -27871952 - L1MB8 LINE L1 -7 6171 5941 * 2699 254 57 26 chr13 91872945 91874037 -27870861 - L1M4 LINE L1 -1865 4281 3156 1533 294 49 24 chr13 91874039 91874573 -27870325 - MER92C LTR ERV1 -2 552 6 688 221 17 11 chr13 91874586 91874767 -27870131 - L1M4 LINE L1 -3009 3137 2956 23 33 0 0 chr13 91875003 91875033 -27869865 + AT_rich Low_complexity Low_complexity 1 30 0 1300 240 35 48 chr13 91875504 91875959 -27868939 - LTR49-int LTR ERV1 -1186 3750 3302 268 105 0 0 chr13 91876169 91876207 -27868691 - LTR49-int LTR ERV1 -1873 4458 4421 1032 188 10 10 chr13 91876220 91876428 -27868470 + L1PB4 LINE L1 3550 3757 -2389 1371 137 286 22 chr13 91876429 91876751 -27868147 - MER4A LTR ERV1 -1 663 257 524 163 10 10 chr13 91876747 91876845 -27868053 - MER4A LTR ERV1 -566 98 1 * 6341 198 28 23 chr13 91876845 91879243 -27865655 + L1PB4 LINE L1 3754 6154 -2 22 35 0 0 chr13 91879243 91879272 -27865626 + AT_rich Low_complexity Low_complexity 1 29 0 15792 174 26 56 chr13 91879419 91882690 -27862208 + L1MA2 LINE L1 15 3185 -4380 434 163 31 0 chr13 91882685 91882783 -27862115 + L1MA2 LINE L1 6621 6721 -844 * 5924 120 25 52 chr13 91882798 91883262 -27861636 + L1MA2 LINE L1 6674 7149 -574 1663 170 0 42 chr13 91883262 91883551 -27861347 - AluSx SINE Alu -23 289 13 5924 120 25 52 chr13 91883551 91884155 -27860743 + L1MA2 LINE L1 7149 7713 -10 1453 264 51 28 chr13 91884499 91885072 -27859826 - LTR49-int LTR ERV1 -1870 3066 2481 388 283 0 29 chr13 91885633 91885806 -27859092 - LTR49-int LTR ERV1 -3025 1911 1744 480 195 34 47 chr13 91885993 91886142 -27858756 - LTR49-int LTR ERV1 -3493 1443 1297 319 179 195 2 chr13 91886142 91886259 -27858639 - L1M4 LINE L1 -5158 1697 1563 * 6408 188 68 24 chr13 91886258 91887707 -27857191 + L1P LINE L1 3433 4945 -1201 380 248 9 9 chr13 91887706 91887811 -27857087 - L1M4 LINE L1 -5840 1019 915 * 1459 285 43 17 chr13 91887908 91888378 -27856520 - L1M4 LINE L1 -6342 517 36 1694 292 31 26 chr13 91888652 91889197 -27855701 + MLT2F LTR ERVL 3 550 -113 2181 108 0 3 chr13 91890033 91890330 -27854568 - AluSx SINE Alu -16 296 1 2114 176 0 3 chr13 91890767 91891137 -27853761 - L1PA15 LINE L1 0 6165 5797 2083 78 2 36 chr13 91891137 91891607 -27853291 - L1PA5 LINE L1 0 6154 5601 1774 188 298 9 chr13 91891610 91892154 -27852744 - L1PA5 LINE L1 -749 5397 4697 26 30 0 0 chr13 91893396 91893429 -27851469 + AT_rich Low_complexity Low_complexity 1 33 0 576 321 52 55 chr13 91894019 91894440 -27850458 + LTR16C LTR ERVL 72 491 0 1327 195 109 0 chr13 91894702 91894813 -27850085 + AluJb SINE Alu 1 99 -213 450 0 0 0 chr13 91894813 91894863 -27850035 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 1327 195 109 0 chr13 91894863 91895008 -27849890 + AluJb SINE Alu 99 285 -27 532 322 116 4 chr13 91895672 91895914 -27848984 + ERVL LTR ERVL 1806 2074 -2922 207 0 0 0 chr13 91895964 91895987 -27848911 + (TA)n Simple_repeat Simple_repeat 1 23 0 273 366 75 24 chr13 91896403 91896657 -27848241 + ERVL LTR ERVL 2725 2991 -2005 617 342 91 32 chr13 91897049 91898055 -27846843 + ERVL LTR ERVL 3567 4714 -921 1886 187 40 74 chr13 91898055 91898558 -27846340 - MER66B LTR ERV1 0 486 1 617 342 91 32 chr13 91898558 91898847 -27846051 + ERVL LTR ERVL 4714 4985 -650 348 332 149 48 chr13 91899363 91899800 -27845098 + LTR16C LTR ERVL 1 481 -10 1818 151 17 10 chr13 91899820 91900112 -27844786 + AluSx SINE Alu 1 294 -18 27 62 0 0 chr13 91900506 91900554 -27844344 + AT_rich Low_complexity Low_complexity 1 48 0 1211 240 53 18 chr13 91900677 91901019 -27843879 - L1ME1 LINE L1 -4 6162 5809 1922 290 45 11 chr13 91901020 91901754 -27843144 - L1MD2 LINE L1 -65 6228 5470 291 296 28 21 chr13 91901798 91901940 -27842958 - L1MD2 LINE L1 -918 5162 5020 2322 134 14 0 chr13 91902131 91902496 -27842402 - L1PA13 LINE L1 -493 5675 5306 3222 94 34 8 chr13 91902499 91902977 -27841921 + L1PA13 LINE L1 5673 6162 -1 541 309 123 0 chr13 91902980 91903070 -27841828 - L1MD2 LINE L1 -1286 4794 4716 2180 121 7 0 chr13 91903070 91903367 -27841531 - AluSc SINE Alu -10 299 1 541 309 123 0 chr13 91903367 91903642 -27841256 - L1MD2 LINE L1 -1364 4716 4384 396 311 53 35 chr13 91903693 91904034 -27840864 - L1MD2 LINE L1 -2142 3938 3592 1337 279 117 50 chr13 91904048 91906434 -27838464 - L1MD2 LINE L1 -3226 2854 333 180 0 0 0 chr13 91906547 91906567 -27838331 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 27 96 0 0 chr13 91906808 91906891 -27838007 + AT_rich Low_complexity Low_complexity 1 83 0 21 0 0 0 chr13 91908266 91908287 -27836611 + AT_rich Low_complexity Low_complexity 1 21 0 382 295 76 39 chr13 91909188 91909950 -27834948 + L1MEc LINE L1 1024 1754 -4461 1301 256 16 19 chr13 91909972 91910335 -27834563 - MLT1A1 LTR MaLR 0 365 4 24 0 0 0 chr13 91910335 91910359 -27834539 + AT_rich Low_complexity Low_complexity 1 24 0 2599 7 0 0 chr13 91910417 91910700 -27834198 + AluY SINE Alu 19 301 -10 246 307 27 42 chr13 91911641 91911767 -27833131 - MIR SINE MIR -69 139 39 186 289 0 0 chr13 91912275 91912320 -27832578 - MIR SINE MIR -15 247 203 1386 211 0 18 chr13 91912592 91912871 -27832027 + AluJo SINE Alu 9 282 -30 327 49 0 0 chr13 91912875 91912916 -27831982 + (GA)n Simple_repeat Simple_repeat 2 42 0 1428 140 0 44 chr13 91913260 91913519 -27831379 - AluSg/x SINE Alu 0 313 65 27 0 0 0 chr13 91913681 91913708 -27831190 + AT_rich Low_complexity Low_complexity 1 27 0 597 302 26 17 chr13 91915358 91915590 -27829308 - LTR37B LTR ERV1 -196 272 39 183 207 0 52 chr13 91916157 91916215 -27828683 - L3 LINE CR1 -905 672 618 516 332 108 12 chr13 91916325 91916584 -27828314 - L2 LINE L2 -827 2487 2204 428 302 24 8 chr13 91917179 91917305 -27827593 - MIR SINE MIR -17 245 118 187 387 99 0 chr13 91917686 91917828 -27827070 - MIR SINE MIR -15 247 92 2115 184 96 116 chr13 91917879 91918722 -27826176 + LTR1B LTR ERV1 1 826 0 244 294 32 8 chr13 91918965 91919091 -27825807 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 234 0 0 0 chr13 91919095 91919121 -27825777 + (CA)n Simple_repeat Simple_repeat 1 26 0 194 0 39 0 chr13 91920821 91920847 -27824051 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1980 86 0 36 chr13 91920853 91921133 -27823765 + AluY SINE Alu 40 309 -2 471 247 58 77 chr13 91921169 91921428 -27823470 + L1ME3A LINE L1 5727 5980 -190 26 30 0 0 chr13 91921765 91921798 -27823100 + AT_rich Low_complexity Low_complexity 1 33 0 2870 200 17 29 chr13 91922824 91923473 -27821425 - MER39B LTR ERV1 0 623 4 287 250 24 24 chr13 91923675 91923759 -27821139 - MER45A DNA AcHobo -1 177 94 1225 172 73 0 chr13 91923765 91924038 -27820860 - L1 LINE L1 -1480 4666 4374 3568 121 44 33 chr13 91924038 91924991 -27819907 + MER11A LTR ERVK 1 1057 -14 700 204 0 17 chr13 91925010 91925186 -27819712 - L1 LINE L1 -1770 4376 4204 3183 187 20 10 chr13 91925225 91926712 -27818186 + L1MA8 LINE L1 4695 6285 -6 239 233 44 44 chr13 91926733 91926823 -27818075 + L1MC4 LINE L1 6614 6703 -1339 265 196 22 0 chr13 91926859 91926905 -27817993 - MER45A DNA AcHobo -128 50 4 2883 6 0 0 chr13 91927159 91927476 -27817422 - AluYb8 SINE Alu -1 317 1 818 229 18 0 chr13 91927876 91928042 -27816856 + FRAM SINE Alu 1 168 -8 830 175 6 0 chr13 91928083 91928260 -27816638 + GA-rich Low_complexity Low_complexity 1 178 0 277 105 0 35 chr13 91928262 91928319 -27816579 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 363 44 0 0 chr13 91928480 91928525 -27816373 + (CA)n Simple_repeat Simple_repeat 1 45 0 261 338 65 65 chr13 91928716 91928991 -27815907 + L2 LINE L2 2484 2758 -556 1335 290 44 57 chr13 91929326 91929874 -27815024 + MLT1E LTR MaLR 51 591 -2 1433 258 69 42 chr13 91929945 91930426 -27814472 + MLT2B1 LTR ERVL 1 494 -26 271 182 15 15 chr13 91930476 91930542 -27814356 + MLT2B1 LTR ERVL 455 520 0 2475 260 53 7 chr13 91930543 91931216 -27813682 + ERVL-B1 LTR ERVL 2 705 -5059 516 203 140 68 chr13 91931249 91931423 -27813475 + MLT2B1 LTR ERVL 316 487 -33 267 31 0 0 chr13 91931423 91931455 -27813443 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 516 203 140 68 chr13 91931455 91931492 -27813406 + MLT2B1 LTR ERVL 487 520 0 207 0 0 0 chr13 91933508 91933531 -27811367 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7574 27 0 0 chr13 91933532 91935038 -27809860 - L1PA3 LINE L1 -17 6138 4633 1539 188 13 29 chr13 91935183 91935497 -27809401 - AluJo SINE Alu -3 309 1 272 276 113 49 chr13 91935708 91935868 -27809030 + MIR SINE MIR 9 176 -86 1868 101 46 62 chr13 91935943 91936117 -27808781 - AluSg SINE Alu -8 302 134 2027 127 3 3 chr13 91936117 91936416 -27808482 - AluSp SINE Alu -14 299 1 1868 101 46 62 chr13 91936416 91936548 -27808350 - AluSg SINE Alu -176 134 1 250 186 68 17 chr13 91936578 91936637 -27808261 - L2 LINE L2 -73 3240 3179 1983 121 0 29 chr13 91936800 91937114 -27807784 - AluY SINE Alu -6 305 1 192 125 0 0 chr13 91937580 91937612 -27807286 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 1499 104 133 8 chr13 91937639 91937888 -27807010 - AluSg1 SINE Alu -12 297 18 1207 230 60 49 chr13 91938099 91938469 -27806429 + MLT1A2 LTR MaLR 1 374 0 23 0 0 0 chr13 91938694 91938717 -27806181 + AT_rich Low_complexity Low_complexity 1 23 0 243 364 61 0 chr13 91938717 91938816 -27806082 + MIR SINE MIR 20 124 -138 183 267 0 0 chr13 91940981 91941026 -27803872 - L3 LINE CR1 -4 1573 1529 1893 139 7 0 chr13 91941027 91941315 -27803583 + AluSx SINE Alu 1 290 -22 1096 152 91 2 chr13 91941769 91941991 -27802907 - L1MA8 LINE L1 -69 6222 5996 383 167 0 22 chr13 91941991 91942080 -27802818 + L1MA8 LINE L1 6202 6289 -2 1096 152 91 2 chr13 91942080 91942101 -27802797 - L1MA8 LINE L1 -295 5996 5978 280 0 0 0 chr13 91942326 91942357 -27802541 + (TTTTG)n Simple_repeat Simple_repeat 3 175 0 1917 117 7 14 chr13 91942357 91942638 -27802260 - AluSc SINE Alu -1 309 1 25 31 0 0 chr13 91942752 91942784 -27802114 + AT_rich Low_complexity Low_complexity 1 32 0 2053 219 129 43 chr13 91942964 91943725 -27801173 - LTR1B LTR ERV1 0 826 1 579 262 112 33 chr13 91944173 91944387 -27800511 + MIR SINE MIR 31 261 -1 21 36 0 0 chr13 91944619 91944647 -27800251 + AT_rich Low_complexity Low_complexity 1 28 0 421 277 154 32 chr13 91944774 91944994 -27799904 + MIR SINE MIR 6 252 -10 855 133 0 15 chr13 91945223 91945358 -27799540 + FLAM_C SINE Alu 1 133 0 2048 120 0 13 chr13 91946092 91946392 -27798506 + AluSg SINE Alu 7 302 -8 214 171 24 0 chr13 91946796 91946837 -27798061 + CT-rich Low_complexity Low_complexity 1 42 0 473 302 79 5 chr13 91947734 91947936 -27796962 + MIR SINE MIR 45 261 -1 35 0 0 0 chr13 91947955 91947990 -27796908 + AT_rich Low_complexity Low_complexity 1 35 0 672 112 41 0 chr13 91947990 91948160 -27796738 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 640 323 71 7 chr13 91948478 91948788 -27796110 - L2 LINE L2 -400 2914 2585 188 398 43 67 chr13 91949466 91949838 -27795060 - L2 LINE L2 -85 3187 2825 270 261 0 0 chr13 91950060 91950129 -27794769 + (TA)n Simple_repeat Simple_repeat 1 69 0 229 244 0 0 chr13 91950406 91950451 -27794447 - MLT1C LTR MaLR -1 466 422 * 1759 183 107 60 chr13 91950448 91950934 -27793964 - MER67D LTR ERV1 -5 509 1 1716 196 78 24 chr13 91950934 91951307 -27793591 - MLT1C LTR MaLR -48 419 27 5457 176 7 12 chr13 91951331 91952345 -27792553 - L1MC1 LINE L1 -7 6326 5318 1687 187 3 3 chr13 91952346 91952651 -27792247 - AluJo SINE Alu -1 311 7 26 50 0 0 chr13 91952984 91953024 -27791874 + AT_rich Low_complexity Low_complexity 1 40 0 34 0 0 0 chr13 91953978 91954012 -27790886 + AT_rich Low_complexity Low_complexity 1 34 0 3573 128 8 2 chr13 91954148 91954672 -27790226 + MER1A DNA MER1_type 1 527 0 1551 213 35 61 chr13 91954709 91955104 -27789794 - MLT1B LTR MaLR -5 385 1 2070 112 17 0 chr13 91955151 91955445 -27789453 + AluSx SINE Alu 1 299 -13 1575 173 0 0 chr13 91955593 91955853 -27789045 + AluSx SINE Alu 45 304 -8 288 0 0 0 chr13 91955853 91955885 -27789013 + (TA)n Simple_repeat Simple_repeat 2 33 0 2128 77 43 0 chr13 91955888 91956188 -27788710 + L1PA10 LINE L1 5855 6167 -1 352 329 42 30 chr13 91956226 91956393 -27788505 - MLT1J LTR MaLR -340 171 3 234 279 75 0 chr13 91956453 91956531 -27788367 + MIR SINE MIR 16 101 -107 35 54 0 0 chr13 91956538 91956594 -27788304 + AT_rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr13 91956889 91956913 -27787985 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr13 91958647 91958682 -27786216 + AT_rich Low_complexity Low_complexity 1 35 0 241 256 48 0 chr13 91960756 91960881 -27784017 + (TA)n Simple_repeat Simple_repeat 1 131 0 23 33 0 0 chr13 91960889 91960919 -27783979 + AT_rich Low_complexity Low_complexity 1 30 0 713 283 38 55 chr13 91960920 91961320 -27783578 + L1ME LINE L1 5297 5689 -481 532 328 99 45 chr13 91961676 91961967 -27782931 + L1MC/D LINE L1 5254 5528 -2280 1638 192 49 72 chr13 91961967 91962395 -27782503 + MER47B DNA MER2_type 1 418 0 532 328 99 45 chr13 91962395 91962504 -27782394 + L1MC/D LINE L1 5528 5630 -2178 1982 182 43 21 chr13 91962504 91962927 -27781971 - MSTB1 LTR MaLR 0 432 1 532 328 99 45 chr13 91962927 91963010 -27781888 + L1MC/D LINE L1 5630 5764 -2044 21 71 0 0 chr13 91963115 91963157 -27781741 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr13 91963355 91963379 -27781519 + AT_rich Low_complexity Low_complexity 1 24 0 608 117 0 0 chr13 91963622 91963716 -27781182 + AluSg/x SINE Alu 219 312 0 2267 71 0 36 chr13 91964327 91964636 -27780262 + AluY SINE Alu 1 298 -13 958 260 100 27 chr13 91965937 91966348 -27778550 - HsTC2 DNA Tc2 -1 1897 1281 1578 168 20 27 chr13 91968665 91968963 -27775935 + AluJo SINE Alu 3 298 -14 566 280 19 10 chr13 91969031 91969238 -27775660 - L1MCc LINE L1 -4590 2532 2324 1099 267 115 32 chr13 91969442 91970274 -27774624 - L1MCc LINE L1 -4889 1534 987 265 306 130 31 chr13 91970703 91971056 -27773842 - L1MCc LINE L1 -5985 438 51 23 33 0 0 chr13 91971758 91971788 -27773110 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 91971891 91971912 -27772986 + AT_rich Low_complexity Low_complexity 1 21 0 280 221 29 29 chr13 91972084 91972152 -27772746 + MIR SINE MIR 195 262 0 350 330 35 20 chr13 91973053 91973253 -27771645 - L2 LINE L2 -954 2360 2158 1157 158 44 0 chr13 91973592 91973820 -27771078 + L1MA4 LINE L1 6056 6293 -7 599 136 0 48 chr13 91973952 91974055 -27770843 + AluJb SINE Alu 203 300 -12 186 233 155 35 chr13 91974058 91974174 -27770724 - L2 LINE L2 -129 3184 3055 1350 249 36 41 chr13 91974177 91974643 -27770255 - MLT1D LTR MaLR -2 503 40 969 347 110 7 chr13 91974667 91975269 -27769629 - L2 LINE L2 -256 3057 2393 2198 308 58 45 chr13 91975381 91976156 -27768742 - LTR48 LTR ERV1 0 787 3 1821 186 68 157 chr13 91976287 91977063 -27767835 + LTR8A LTR ERV1 1 707 -20 2319 202 13 2 chr13 91977152 91977608 -27767290 + LOR1b LTR ERV1 1 461 0 10484 145 43 15 chr13 91977608 91979453 -27765445 + LOR1b-int LTR ERV1 1 1897 -6223 829 142 19 0 chr13 91979444 91979599 -27765299 + LOR1b-int LTR ERV1 2527 2684 -5436 * 3726 132 22 12 chr13 91979599 91980241 -27764657 + LOR1b-int LTR ERV1 1879 2526 -5594 1587 88 18 144 chr13 91980247 91980315 -27764583 + LOR1b-int LTR ERV1 1603 1678 -6442 2220 79 3 22 chr13 91980315 91980630 -27764268 + AluSg SINE Alu 1 309 -1 1587 88 18 144 chr13 91980630 91980901 -27763997 + LOR1b-int LTR ERV1 1678 1899 -6221 3777 125 42 0 chr13 91980906 91981547 -27763351 + LOR1b-int LTR ERV1 2539 3206 -4914 2055 163 75 3 chr13 91981542 91982204 -27762694 + LOR1b-int LTR ERV1 7332 8120 0 * 2469 187 13 0 chr13 91982205 91982660 -27762238 + LOR1b LTR ERV1 1 461 0 230 326 80 14 chr13 91982662 91982800 -27762098 + L2 LINE L2 2296 2442 -872 332 346 100 54 chr13 91982807 91983345 -27761553 + L2 LINE L2 2614 3174 -139 247 225 90 56 chr13 91983475 91983564 -27761334 + L2 LINE L2 3181 3272 0 368 348 65 7 chr13 91983961 91984116 -27760782 - HERVL LTR ERVL -2394 3260 3097 222 105 0 0 chr13 91984188 91984226 -27760672 + (T)n Simple_repeat Simple_repeat 1 38 0 294 29 0 0 chr13 91984680 91984715 -27760183 + (TG)n Simple_repeat Simple_repeat 2 36 0 49 52 0 0 chr13 91985642 91985719 -27759179 + AT_rich Low_complexity Low_complexity 1 77 0 189 0 0 0 chr13 91985822 91985843 -27759055 + (A)n Simple_repeat Simple_repeat 1 21 0 1483 190 3 44 chr13 91985847 91986168 -27758730 + AluJo SINE Alu 1 308 -4 2443 73 0 6 chr13 91986824 91987137 -27757761 - AluY SINE Alu 0 311 1 23 68 0 0 chr13 91987498 91987542 -27757356 + AT_rich Low_complexity Low_complexity 1 44 0 348 231 52 37 chr13 91987769 91987903 -27756995 - L1MC5 LINE L1 -224 7737 7602 29 0 0 0 chr13 91987937 91987966 -27756932 + AT_rich Low_complexity Low_complexity 1 29 0 929 169 0 18 chr13 91988834 91989000 -27755898 + AluSg/x SINE Alu 137 299 -13 2485 57 0 0 chr13 91989005 91989305 -27755593 + AluY SINE Alu 1 300 -11 563 77 13 0 chr13 91989320 91989398 -27755500 + MADE1 DNA Mariner 2 80 0 423 0 0 0 chr13 91989471 91989518 -27755380 + (CA)n Simple_repeat Simple_repeat 2 48 0 481 292 198 0 chr13 91990764 91990956 -27753942 - MIR SINE MIR -25 237 8 5352 114 8 27 chr13 91991241 91992092 -27752806 - L1PA13 LINE L1 -2 6161 5327 2007 117 7 33 chr13 91992097 91992396 -27752502 - AluSp SINE Alu -14 299 9 2225 165 2 2 chr13 91992402 91992797 -27752101 - L1PA13 LINE L1 -896 5250 4856 8101 179 20 15 chr13 91993030 91994379 -27750519 - L1PA13 LINE L1 -1298 4848 3488 186 43 0 0 chr13 91994379 91994402 -27750496 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8101 179 20 15 chr13 91994402 91994669 -27750229 - L1PA13 LINE L1 -2658 3488 3224 1673 149 98 23 chr13 91994673 91995021 -27749877 + THE1C LTR MaLR 2 375 0 9275 143 61 3 chr13 91995021 91996515 -27748383 + THE1C-int LTR MaLR 1 1580 0 1594 143 65 24 chr13 91996515 91996809 -27748089 + THE1C LTR MaLR 1 306 -69 180 0 0 0 chr13 91996849 91996869 -27748029 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 484 206 147 15 chr13 91996960 91997096 -27747802 + MLT1B LTR MaLR 1 154 -236 2426 163 39 2 chr13 91997096 91997507 -27747391 - MSTB LTR MaLR 0 426 1 8347 206 20 7 chr13 91997512 91999136 -27745762 - MSTB-int LTR MaLR -5 1646 2 2059 172 37 49 chr13 91999137 91999568 -27745330 - MSTB LTR MaLR 0 426 1 751 290 5 0 chr13 91999627 91999820 -27745078 + MLT1B LTR MaLR 197 390 0 26 0 0 0 chr13 91999832 91999858 -27745040 + AT_rich Low_complexity Low_complexity 1 26 0 2073 136 3 7 chr13 91999915 92000224 -27744674 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr13 92001485 92001507 -27743391 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 92001670 92001692 -27743206 + (T)n Simple_repeat Simple_repeat 1 22 0 3402 64 0 7 chr13 92002093 92002544 -27742354 - LTR7 LTR ERV1 -2 448 1 2507 82 45 13 chr13 92002544 92002924 -27741974 - HERVH LTR ERV1 0 7713 7322 1391 134 19 0 chr13 92002922 92003138 -27741760 - HERVH LTR ERV1 -1894 5819 5600 * 4235 146 9 1 chr13 92003139 92003796 -27741102 - HERVH LTR ERV1 -2564 5149 4488 3341 110 6 6 chr13 92003798 92004300 -27740598 - HERVH LTR ERV1 -3720 3993 3492 936 140 7 0 chr13 92004290 92004440 -27740458 - HERVH LTR ERV1 -4423 3290 3140 * 17106 96 17 24 chr13 92004419 92007562 -27737336 - HERVH LTR ERV1 -4718 2995 1 3380 69 0 7 chr13 92007564 92008015 -27736883 - LTR7 LTR ERV1 -2 448 1 1946 142 38 46 chr13 92008127 92008494 -27736404 + THE1B LTR MaLR 1 364 0 5517 123 6 29 chr13 92008494 92009262 -27735636 + THE1B-int LTR MaLR 1 748 -832 2056 103 3 17 chr13 92009262 92009562 -27735336 + AluY SINE Alu 1 296 -15 5517 123 6 29 chr13 92009562 92009656 -27735242 + THE1B-int LTR MaLR 748 843 -737 4313 95 10 3 chr13 92009648 92010228 -27734670 + THE1B-int LTR MaLR 997 1580 0 * 2017 157 36 33 chr13 92010228 92010591 -27734307 + THE1B LTR MaLR 1 364 0 265 326 22 51 chr13 92010910 92011088 -27733810 - ERVL LTR ERVL -763 5001 4829 472 289 96 60 chr13 92011340 92011641 -27733257 - MLT1G3 LTR MaLR -195 335 24 733 255 32 0 chr13 92011800 92011957 -27732941 - MER58A DNA MER1_type 0 162 1 776 107 18 0 chr13 92012259 92012371 -27732527 + THE1-int LTR MaLR 873 986 -594 25 0 0 0 chr13 92013130 92013155 -27731743 + AT_rich Low_complexity Low_complexity 1 25 0 309 246 44 12 chr13 92013184 92013307 -27731591 - MLT1-int LTR MaLR -841 530 432 231 304 0 0 chr13 92013334 92013403 -27731495 - L1MC3 LINE L1 -119 7666 7598 1440 240 18 21 chr13 92014131 92014299 -27730599 + MLT2B1 LTR ERVL 2 169 -385 2473 128 8 5 chr13 92014299 92014673 -27730225 + THE1C LTR MaLR 1 375 0 1440 240 18 21 chr13 92014673 92014947 -27729951 + MLT2B1 LTR ERVL 169 537 -17 24 32 0 0 chr13 92015290 92015321 -27729577 + AT_rich Low_complexity Low_complexity 1 31 0 941 212 37 120 chr13 92015419 92015923 -27728975 - LTR34 LTR ERV1 0 872 136 300 232 54 27 chr13 92016005 92016117 -27728781 - MER4C LTR ERV1 -349 116 2 28 0 0 0 chr13 92016466 92016494 -27728404 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 92018510 92018532 -27726366 + AT_rich Low_complexity Low_complexity 1 22 0 3594 242 36 18 chr13 92018882 92020616 -27724282 - L1MB8 LINE L1 0 6178 4411 708 133 8 0 chr13 92020905 92021025 -27723873 + Cheshire DNA MER1_type 1996 2116 -304 216 0 0 0 chr13 92022195 92022219 -27722679 + (TA)n Simple_repeat Simple_repeat 2 25 0 1979 131 0 3 chr13 92022219 92022502 -27722396 - AluSc SINE Alu -27 282 1 27 0 0 0 chr13 92022576 92022603 -27722295 + AT_rich Low_complexity Low_complexity 1 27 0 1217 248 65 77 chr13 92022730 92023250 -27721648 - MLT2B1 LTR ERVL -6 514 1 1508 151 25 16 chr13 92023358 92023603 -27721295 - MER1B DNA MER1_type 0 339 133 23 54 0 0 chr13 92023638 92023675 -27721223 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr13 92024315 92024350 -27720548 + AT_rich Low_complexity Low_complexity 1 35 0 301 176 0 0 chr13 92024370 92024421 -27720477 + L1MD1 LINE L1 6050 6100 -142 1666 118 37 4 chr13 92024434 92024705 -27720193 + L1PB1 LINE L1 5870 6149 -2 22 56 0 0 chr13 92024968 92025004 -27719894 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr13 92025240 92025276 -27719622 + AT_rich Low_complexity Low_complexity 1 36 0 2359 181 24 2 chr13 92025447 92025857 -27719041 + MSTC LTR MaLR 10 428 0 4534 263 66 52 chr13 92025857 92027485 -27717413 + MSTC-int LTR MaLR 1 1651 0 1451 247 55 8 chr13 92027487 92027852 -27717046 + MSTC LTR MaLR 3 384 -44 475 254 29 73 chr13 92028383 92028588 -27716310 - MIR SINE MIR 0 262 67 21 0 0 0 chr13 92029769 92029790 -27715108 + AT_rich Low_complexity Low_complexity 1 21 0 317 352 28 16 chr13 92030795 92030977 -27713921 + L1MEd LINE L1 446 629 -5490 1351 326 92 5 chr13 92031063 92031648 -27713250 - L2 LINE L2 -556 2758 2123 1084 251 125 25 chr13 92031747 92032074 -27712824 + MLT1A2 LTR MaLR 4 363 -11 1412 186 20 111 chr13 92032414 92032812 -27712086 - MLT1A1 LTR MaLR -3 362 1 840 269 30 0 chr13 92033566 92033767 -27711131 + MER20 DNA MER1_type 4 210 -9 231 173 0 0 chr13 92033858 92033910 -27710988 + (ATATG)n Simple_repeat Simple_repeat 4 55 0 894 269 46 76 chr13 92033914 92034389 -27710509 + MLT1C LTR MaLR 6 466 -1 204 158 0 0 chr13 92034399 92034437 -27710461 + (ATATG)n Simple_repeat Simple_repeat 4 41 0 781 284 0 0 chr13 92035779 92035969 -27708929 - MLT1A1-int LTR MaLR -228 1143 954 402 196 97 44 chr13 92035971 92036084 -27708814 - MLT1A2 LTR MaLR -289 101 1 677 299 23 9 chr13 92036087 92036301 -27708597 - MLT1E LTR MaLR -374 219 3 2944 167 2 2 chr13 92037227 92037724 -27707174 - LOR1a LTR ERV1 0 497 1 2271 74 3 0 chr13 92037905 92038213 -27706685 - AluSp SINE Alu 0 309 1 23 54 0 0 chr13 92040081 92040118 -27704780 + AT_rich Low_complexity Low_complexity 1 37 0 1018 107 54 6 chr13 92040739 92040907 -27703991 + L1PA11 LINE L1 5999 6174 0 235 250 36 12 chr13 92041046 92041083 -27703815 + (TA)n Simple_repeat Simple_repeat 2 37 -50 1898 116 0 0 chr13 92041083 92041341 -27703557 + AluSq SINE Alu 39 296 -17 235 250 36 12 chr13 92041341 92041387 -27703511 + (TA)n Simple_repeat Simple_repeat 37 87 0 26 0 0 0 chr13 92041734 92041760 -27703138 + AT_rich Low_complexity Low_complexity 1 26 0 339 190 38 0 chr13 92045943 92046082 -27698816 + GA-rich Low_complexity Low_complexity 1 144 0 21 0 0 0 chr13 92046759 92046780 -27698118 + AT_rich Low_complexity Low_complexity 1 21 0 2243 117 0 7 chr13 92046881 92047188 -27697710 + AluSx SINE Alu 2 306 -6 1452 325 20 19 chr13 92048711 92049410 -27695488 + L1MCb LINE L1 4 703 -5342 1485 191 26 16 chr13 92050236 92050539 -27694359 + AluJo SINE Alu 7 312 0 22 0 0 0 chr13 92050911 92050933 -27693965 + AT_rich Low_complexity Low_complexity 1 22 0 350 216 0 120 chr13 92050973 92051098 -27693800 + L2 LINE L2 3192 3301 -12 1071 168 0 5 chr13 92052679 92052864 -27692034 - MSTA LTR MaLR 0 428 245 12077 117 9 18 chr13 92053116 92055086 -27689812 - HERVH LTR ERV1 -5445 2268 437 2980 178 73 5 chr13 92055438 92056016 -27688882 + LTR31 LTR ERV1 1 617 -2 1989 242 80 50 chr13 92056016 92057478 -27687420 - L1M4c LINE L1 -4718 1928 459 1079 217 120 8 chr13 92057620 92057887 -27687011 - MSTA LTR MaLR -131 297 1 6037 201 60 56 chr13 92057888 92059459 -27685439 - MSTA-int LTR MaLR -1 1579 3 1991 178 81 15 chr13 92059461 92059854 -27685044 - MSTA LTR MaLR 0 428 10 186 177 32 16 chr13 92060059 92060121 -27684777 + (TA)n Simple_repeat Simple_repeat 1 63 0 710 191 28 22 chr13 92060267 92060445 -27684453 - MER3 DNA MER1_type -26 183 5 306 372 41 0 chr13 92060503 92060648 -27684250 + MIR SINE MIR 81 231 -31 2122 237 71 2 chr13 92060648 92061171 -27683727 + MER89 LTR ERV1 1 559 0 1300 291 80 35 chr13 92061171 92061800 -27683098 + MER89-int LTR ERV1 1 657 -6144 4927 247 59 46 chr13 92062109 92063688 -27681210 + MER89-int LTR ERV1 181 3910 -2891 21 0 0 0 chr13 92065115 92065136 -27679762 + AT_rich Low_complexity Low_complexity 1 21 0 230 243 9 19 chr13 92115870 92115977 -27628921 + L1ME LINE L1 5010 5115 -1031 408 299 119 53 chr13 92116127 92116445 -27628453 + L1ME LINE L1 5274 5612 -554 1223 224 78 15 chr13 92116453 92116788 -27628110 + MLT1A2 LTR MaLR 6 361 -13 488 238 20 40 chr13 92116866 92117017 -27627881 - MER3 DNA MER1_type -18 191 44 260 296 46 0 chr13 92117023 92117131 -27627767 + L1ME LINE L1 5742 5854 -316 28 29 0 0 chr13 92117194 92117229 -27627669 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr13 92118064 92118100 -27626798 + AT_rich Low_complexity Low_complexity 1 36 0 578 186 0 0 chr13 92118464 92118566 -27626332 - FLAM_A SINE Alu -19 123 22 198 266 62 0 chr13 92118597 92118661 -27626237 - MIR SINE MIR -79 183 116 * 298 340 75 6 chr13 92118660 92118819 -27626079 - MIR SINE MIR 0 262 93 1617 150 8 0 chr13 92118819 92119065 -27625833 + AluJo SINE Alu 44 291 -21 35 24 0 0 chr13 92119065 92119107 -27625791 + AT_rich Low_complexity Low_complexity 1 42 0 3300 187 69 34 chr13 92119279 92120077 -27624821 + LTR1B LTR ERV1 1 826 0 943 184 51 27 chr13 92120083 92120379 -27624519 + MER2 DNA MER2_type 6 344 -1 513 313 55 32 chr13 92120846 92121341 -27623557 + L1MEc LINE L1 1232 1737 -4659 1646 211 7 0 chr13 92122726 92123025 -27621873 - AluJb SINE Alu -11 301 1 245 267 50 0 chr13 92123659 92123719 -27621179 - L2 LINE L2 -86 3227 3165 715 273 61 15 chr13 92124090 92124354 -27620544 + MLT1C LTR MaLR 3 278 -189 631 286 38 47 chr13 92124361 92124700 -27620198 + LTR16B LTR ERVL 129 464 0 2168 141 8 8 chr13 92124724 92125079 -27619819 + THE1A LTR MaLR 1 355 0 5467 126 17 2 chr13 92125079 92125903 -27618995 + THE1A-int LTR MaLR 1 836 -744 471 125 62 0 chr13 92125898 92125978 -27618920 - THE1-int LTR MaLR -640 940 856 * 469 60 15 0 chr13 92126018 92126085 -27618813 + THE1A-int LTR MaLR 1513 1580 0 1586 127 153 22 chr13 92126085 92126399 -27618499 + THE1A LTR MaLR 1 355 0 6723 196 93 43 chr13 92126413 92127989 -27616909 + MER52A LTR ERV1 1 1755 0 252 135 0 0 chr13 92128287 92128324 -27616574 + AluJ/FLAM SINE Alu 36 72 -230 294 29 0 0 chr13 92128340 92128375 -27616523 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 595 226 8 0 chr13 92128410 92128534 -27616364 + AluJb SINE Alu 177 301 -11 208 182 15 15 chr13 92128540 92128606 -27616292 - MER5C DNA MER1_type -72 252 187 5517 116 8 0 chr13 92128635 92128982 -27615916 - L1PA13 LINE L1 -1 6162 5819 2326 90 0 3 chr13 92128982 92129283 -27615615 - AluY SINE Alu -11 300 1 5517 116 8 0 chr13 92129283 92130080 -27614818 - L1PA13 LINE L1 -344 5819 5038 22 0 0 0 chr13 92130468 92130490 -27614408 + AT_rich Low_complexity Low_complexity 1 22 0 189 147 0 0 chr13 92130708 92130742 -27614156 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1248 231 62 55 chr13 92130935 92131411 -27613487 + MER67C LTR ERV1 58 511 -3 270 285 85 40 chr13 92131492 92131692 -27613206 - MLT1L LTR MaLR -38 577 369 32 0 0 0 chr13 92132940 92132972 -27611926 + AT_rich Low_complexity Low_complexity 1 32 0 456 218 25 81 chr13 92133349 92133546 -27611352 - LTR37B LTR ERV1 -90 378 193 335 250 23 0 chr13 92133974 92134062 -27610836 - MER31-int LTR ERV1 -909 4027 3938 392 200 0 0 chr13 92134386 92134476 -27610422 - LTR37B LTR ERV1 0 468 379 1949 136 0 7 chr13 92136581 92136925 -27607973 + AluSx SINE Alu 1 342 0 662 161 0 9 chr13 92136946 92137058 -27607840 + FLAM_C SINE Alu 13 123 -20 21 0 0 0 chr13 92137058 92137079 -27607819 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 92137337 92137373 -27607525 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 92138920 92138944 -27605954 + AT_rich Low_complexity Low_complexity 1 24 0 1013 206 10 14 chr13 92139104 92139313 -27605585 + AluJo SINE Alu 3 210 -102 829 202 0 55 chr13 92139313 92139463 -27605435 - AluJo SINE Alu -58 254 114 2587 93 6 8 chr13 92139463 92139818 -27605080 + THE1A LTR MaLR 1 354 -1 829 202 0 55 chr13 92139818 92139850 -27605048 - AluJo SINE Alu -198 114 82 445 311 91 77 chr13 92139861 92140357 -27604541 + MERVL LTR ERVL 3523 4025 -1629 351 258 44 107 chr13 92140343 92140568 -27604330 + MERVL LTR ERVL 2400 2610 -2875 * 634 103 0 0 chr13 92142242 92142329 -27602569 - AluSq SINE Alu -159 154 68 2065 148 0 0 chr13 92142888 92143198 -27601700 - AluSx SINE Alu -2 310 1 186 103 0 0 chr13 92143498 92143527 -27601371 + (T)n Simple_repeat Simple_repeat 1 29 0 21 57 0 0 chr13 92144042 92144077 -27600821 + AT_rich Low_complexity Low_complexity 1 35 0 2127 174 3 13 chr13 92145044 92145423 -27599475 + THE1C LTR MaLR 1 375 0 259 313 75 0 chr13 92146649 92146716 -27598182 - MIR SINE MIR -161 101 30 24 77 0 0 chr13 92146752 92146804 -27598094 + AT_rich Low_complexity Low_complexity 1 52 0 2266 99 0 10 chr13 92146977 92147289 -27597609 + AluSg SINE Alu 1 309 -1 645 256 57 94 chr13 92147601 92147953 -27596945 + MLT1E1 LTR MaLR 4 342 -312 714 276 5 27 chr13 92148017 92148202 -27596696 + MLT1E1 LTR MaLR 474 654 0 411 275 67 48 chr13 92148208 92148477 -27596421 - L1P5 LINE L1 -599 5552 5279 22 0 0 0 chr13 92148548 92148570 -27596328 + AT_rich Low_complexity Low_complexity 1 22 0 2052 131 3 6 chr13 92148765 92149078 -27595820 - AluSq SINE Alu -1 312 1 27 0 0 0 chr13 92149086 92149113 -27595785 + AT_rich Low_complexity Low_complexity 1 27 0 335 335 30 12 chr13 92149870 92150037 -27594861 - ERVL LTR ERVL -815 4949 4780 2011 354 53 18 chr13 92150104 92151305 -27593593 - ERVL LTR ERVL -1119 4645 3402 491 374 40 17 chr13 92151438 92151668 -27593230 - ERVL LTR ERVL -2287 3198 2956 1928 81 36 0 chr13 92151668 92151915 -27592983 + AluSg SINE Alu 42 297 -13 491 374 40 17 chr13 92151915 92152037 -27592861 - ERVL LTR ERVL -2529 2956 2838 299 321 0 12 chr13 92152189 92152270 -27592628 + MER5C DNA MER1_type 1 80 -244 841 298 66 19 chr13 92152346 92152725 -27592173 - ERVL LTR ERVL -3057 2707 2311 285 284 42 11 chr13 92152785 92152880 -27592018 + MER94 DNA DNA 1 98 -36 458 346 49 22 chr13 92152913 92153311 -27591587 - ERVL LTR ERVL -3457 2236 1777 1080 262 37 57 chr13 92154291 92154485 -27590413 - L1MEd LINE L1 -5068 959 763 2090 107 3 3 chr13 92154485 92154802 -27590096 + AluSg SINE Alu 1 310 0 1080 262 37 57 chr13 92154802 92155207 -27589691 - L1MEd LINE L1 -5264 763 372 26 50 0 0 chr13 92155218 92155258 -27589640 + AT_rich Low_complexity Low_complexity 1 40 0 466 211 86 51 chr13 92155291 92155466 -27589432 - L1MEd LINE L1 -5667 360 180 351 312 0 0 chr13 92155849 92155958 -27588940 - L1M4 LINE L1 -6626 233 125 324 269 144 24 chr13 92155962 92156129 -27588769 - L1M4 LINE L1 -6669 190 4 * 692 280 94 32 chr13 92156126 92156626 -27588272 - L1MEc LINE L1 -5317 1079 549 666 302 16 16 chr13 92156747 92156995 -27587903 - L1MEc LINE L1 -6068 328 81 758 186 52 127 chr13 92157163 92157454 -27587444 - ORSL DNA AcHobo 0 275 7 213 385 55 28 chr13 92157460 92157678 -27587220 + L2 LINE L2 588 811 -2503 260 254 0 0 chr13 92158725 92158796 -27586102 - L1P1 LINE L1 -716 5439 5369 225 139 0 0 chr13 92159001 92159044 -27585854 + (TC)n Simple_repeat Simple_repeat 2 44 0 44 46 0 0 chr13 92159205 92159270 -27585628 + AT_rich Low_complexity Low_complexity 1 65 0 29 47 0 0 chr13 92159366 92159409 -27585489 + AT_rich Low_complexity Low_complexity 1 43 0 21 89 0 0 chr13 92159611 92159667 -27585231 + AT_rich Low_complexity Low_complexity 1 56 0 205 243 96 124 chr13 92159882 92160059 -27584839 - MIR SINE MIR -48 214 43 21 57 0 0 chr13 92161064 92161099 -27583799 + AT_rich Low_complexity Low_complexity 1 35 0 323 227 27 0 chr13 92161832 92161907 -27582991 + MLT1H1 LTR MaLR 472 548 -7 908 284 26 14 chr13 92161962 92162307 -27582591 + L1ME3A LINE L1 5812 6160 -10 182 282 0 0 chr13 92163807 92163846 -27581052 - L2 LINE L2 -97 3216 3178 657 197 0 36 chr13 92164442 92164579 -27580319 + FLAM_C SINE Alu 2 133 0 800 111 7 0 chr13 92164724 92164859 -27580039 + (TTCC)n Simple_repeat Simple_repeat 4 139 0 278 212 115 26 chr13 92164898 92165011 -27579887 - L1MEd LINE L1 -5987 132 10 21 0 0 0 chr13 92166379 92166400 -27578498 + AT_rich Low_complexity Low_complexity 1 21 0 1625 189 3 28 chr13 92166453 92166770 -27578128 + AluJb SINE Alu 4 312 0 1259 265 25 13 chr13 92167393 92167789 -27577109 + L1ME1 LINE L1 5601 6001 -165 5594 74 13 4 chr13 92167900 92168659 -27576239 + MER4E LTR ERV1 1 766 0 25 0 0 0 chr13 92171515 92171540 -27573358 + AT_rich Low_complexity Low_complexity 1 25 0 533 244 0 9 chr13 92171559 92171674 -27573224 + MER63 DNA MER1_type 671 784 -277 330 144 21 10 chr13 92172978 92173075 -27571823 + (TA)n Simple_repeat Simple_repeat 2 99 0 4827 222 29 54 chr13 92173770 92174401 -27570497 + L1 LINE L1 2886 3531 -2615 1869 92 0 0 chr13 92174401 92174641 -27570257 - AluY SINE Alu -9 302 63 4827 222 29 54 chr13 92174641 92176233 -27568665 + L1 LINE L1 3531 4888 -1258 3416 202 36 53 chr13 92176227 92177423 -27567475 + L1MA2 LINE L1 4482 5696 -608 * 2010 137 33 39 chr13 92177423 92177787 -27567111 + THE1B LTR MaLR 3 364 0 11231 102 2 6 chr13 92177787 92179374 -27565524 + THE1B-int LTR MaLR 1 1580 0 2044 135 33 28 chr13 92179374 92179736 -27565162 + THE1B LTR MaLR 1 364 0 3416 202 36 53 chr13 92179736 92180289 -27564609 + L1MA2 LINE L1 5693 6137 -167 255 151 19 19 chr13 92180457 92180510 -27564388 + MER4A LTR ERV1 135 187 -477 5415 76 18 0 chr13 92180666 92181391 -27563507 - MER11B LTR ERVK -498 738 1 11058 177 34 21 chr13 92181391 92183478 -27561420 + LTR28-int LTR ERV1 1514 3528 -3563 7898 149 23 2 chr13 92183476 92184985 -27559913 + LTR28-int LTR ERV1 5417 7089 -2 * 738 296 0 0 chr13 92184987 92185166 -27559732 + LTR28 LTR ERV1 1 179 -841 588 268 121 55 chr13 92185195 92185507 -27559391 + MER52A LTR ERV1 246 1305 -141 7214 200 45 29 chr13 92185618 92187086 -27557812 - L1 LINE L1 -2122 5443 4000 2214 141 11 24 chr13 92187086 92187455 -27557443 - THE1B LTR MaLR 0 364 1 7214 200 45 29 chr13 92187455 92187802 -27557096 - L1 LINE L1 -3565 4000 3599 1935 134 36 16 chr13 92187802 92188108 -27556790 - AluSq SINE Alu -1 312 1 7214 200 45 29 chr13 92188108 92188261 -27556637 - L1 LINE L1 -3966 3599 3450 23 86 0 0 chr13 92188656 92188714 -27556184 + AT_rich Low_complexity Low_complexity 1 58 0 304 333 73 23 chr13 92188748 92189009 -27555889 - L1M4 LINE L1 -2931 3215 2942 313 57 57 14 chr13 92190206 92190276 -27554622 + (TA)n Simple_repeat Simple_repeat 1 73 0 23 33 0 0 chr13 92191919 92191949 -27552949 + AT_rich Low_complexity Low_complexity 1 30 0 3180 92 7 2 chr13 92192107 92192542 -27552356 - LTR3b LTR ERVK 0 437 1 948 197 16 5 chr13 92193073 92193261 -27551637 - L1M2 LINE L1 -686 5605 5416 1747 296 67 53 chr13 92193261 92193983 -27550915 - ERVL LTR ERVL -465 5228 4458 323 85 153 17 chr13 92193983 92194042 -27550856 - MADE1 DNA Mariner -2 78 12 350 96 0 0 chr13 92194067 92194119 -27550779 + MADE1 DNA Mariner 29 80 0 1033 275 52 20 chr13 92194119 92194605 -27550293 - ERVL LTR ERVL -1264 4500 3955 864 267 106 13 chr13 92194655 92195041 -27549857 - L1ME LINE L1 -399 5765 5344 397 297 22 12 chr13 92195041 92195179 -27549719 - MLT1F LTR MaLR -254 313 168 222 150 0 0 chr13 92195179 92195219 -27549679 + (GA)n Simple_repeat Simple_repeat 1 40 0 546 202 8 23 chr13 92195251 92195380 -27549518 - L1PA8 LINE L1 0 6172 6046 7660 206 29 6 chr13 92195380 92197316 -27547582 - L1P LINE L1 -3087 3059 1054 38 68 0 0 chr13 92197390 92197463 -27547435 + AT_rich Low_complexity Low_complexity 1 73 0 857 214 31 0 chr13 92197701 92197979 -27546919 + L1M4 LINE L1 5160 5444 -734 820 244 64 42 chr13 92198152 92198463 -27546435 + LTR34 LTR ERV1 382 699 0 939 156 6 6 chr13 92198466 92198639 -27546259 + L1MA4A LINE L1 6121 6293 -10 4888 186 26 16 chr13 92198652 92200045 -27544853 + L1MA8 LINE L1 4873 6286 -5 734 220 115 139 chr13 92200070 92200538 -27544360 - MSTB2 LTR MaLR 0 457 1 241 228 43 11 chr13 92200668 92200760 -27544138 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 1972 134 38 0 chr13 92201021 92201313 -27543585 + AluSx SINE Alu 1 303 -9 319 319 0 9 chr13 92201927 92202043 -27542855 + MER58B DNA MER1_type 191 305 -36 291 256 8 103 chr13 92202488 92202605 -27542293 - MLT2E LTR ERVL -8 620 515 710 309 100 14 chr13 92202688 92203024 -27541874 - MLT2E LTR ERVL -273 355 1 466 307 102 28 chr13 92205089 92205372 -27539526 + LTR16A1 LTR ERVL 96 399 -58 1644 215 33 54 chr13 92205398 92205776 -27539122 + MLT2D LTR ERVL 1 371 -43 279 0 0 0 chr13 92205776 92205807 -27539091 + (CA)n Simple_repeat Simple_repeat 1 31 0 1644 215 33 54 chr13 92205807 92205851 -27539047 + MLT2D LTR ERVL 371 414 0 13714 243 49 41 chr13 92205851 92207296 -27537602 + ERVL-D LTR ERVL 1 1433 -4221 7701 17 0 0 chr13 92207296 92208984 -27535914 - L1PA3 LINE L1 0 6155 4502 13714 243 49 41 chr13 92208984 92211540 -27533358 + ERVL-D LTR ERVL 1433 4124 -1530 314 330 53 22 chr13 92211544 92211771 -27533127 + L1M4c LINE L1 2174 2407 -3977 6860 264 45 41 chr13 92211771 92214276 -27530622 + L1M4c LINE L1 2648 5168 -1214 1189 200 8 4 chr13 92214276 92214511 -27530387 - MER46A DNA MER2_type 0 236 1 6860 264 45 41 chr13 92214511 92214980 -27529918 + L1M4c LINE L1 5168 5634 -748 1153 136 11 0 chr13 92214985 92215161 -27529737 + THE1A LTR MaLR 178 355 0 675 90 0 0 chr13 92215188 92215277 -27529621 + MLT1A1 LTR MaLR 277 365 0 679 226 0 0 chr13 92215561 92215694 -27529204 - FLAM_C SINE Alu -4 139 7 216 135 0 0 chr13 92215928 92215965 -27528933 + (TG)n Simple_repeat Simple_repeat 2 38 0 2707 29 0 0 chr13 92217175 92217486 -27527412 + AluY SINE Alu 1 311 0 200 35 35 0 chr13 92217494 92217523 -27527375 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 236 75 0 25 chr13 92217669 92217709 -27527189 + (CA)n Simple_repeat Simple_repeat 2 40 0 1984 117 0 7 chr13 92217965 92218255 -27526643 + AluSg SINE Alu 1 288 -22 2271 113 3 0 chr13 92219524 92219929 -27524969 + AluSx SINE Alu 1 406 0 21 36 0 0 chr13 92219983 92220011 -27524887 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 92220060 92220092 -27524806 + AT_rich Low_complexity Low_complexity 1 32 0 667 244 83 4 chr13 92220357 92220587 -27524311 + L1 LINE L1 2887 3134 -3012 204 301 14 14 chr13 92221002 92221075 -27523823 - MIR SINE MIR -120 142 70 399 41 0 0 chr13 92222263 92222312 -27522586 + (CA)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr13 92223183 92223211 -27521687 + AT_rich Low_complexity Low_complexity 1 28 0 1056 284 96 28 chr13 92223426 92223999 -27520899 + MLT1G1 LTR MaLR 1 590 0 320 276 117 39 chr13 92225506 92225763 -27519135 - L1ME4a LINE L1 -27 6094 5818 22 70 0 0 chr13 92226041 92226084 -27518814 + AT_rich Low_complexity Low_complexity 1 43 0 807 193 78 9 chr13 92228058 92228276 -27516622 + MER61D LTR ERV1 254 425 0 783 234 13 0 chr13 92229541 92229695 -27515203 + AluJb SINE Alu 137 292 -20 21 36 0 0 chr13 92229980 92230008 -27514890 + AT_rich Low_complexity Low_complexity 1 28 0 1189 237 116 25 chr13 92230020 92230375 -27514523 + MLT1D LTR MaLR 117 503 -2 244 255 20 29 chr13 92230481 92230583 -27514315 - MER103 DNA DNA -19 147 47 189 74 0 0 chr13 92230943 92230970 -27513928 + (A)n Simple_repeat Simple_repeat 1 27 0 756 72 0 0 chr13 92231265 92231376 -27513522 + AluY SINE Alu 200 310 -1 1660 233 95 7 chr13 92231531 92231995 -27512903 + MLT1D LTR MaLR 1 505 0 411 244 0 0 chr13 92232543 92232625 -27512273 + MER81 DNA DNA 2 83 -31 279 54 0 0 chr13 92232652 92232689 -27512209 + (CA)n Simple_repeat Simple_repeat 2 38 0 278 177 80 71 chr13 92232721 92232834 -27512064 + L1MC4 LINE L1 7922 8035 -7 421 279 46 55 chr13 92233220 92233439 -27511459 + L2 LINE L2 3097 3313 0 204 345 69 9 chr13 92234240 92234356 -27510542 + L2 LINE L2 3182 3304 -9 536 261 134 27 chr13 92234726 92235129 -27509769 + L1M4 LINE L1 2782 3227 -2919 191 36 36 0 chr13 92235409 92235437 -27509461 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 273 294 7 78 chr13 92236633 92236786 -27508112 + Charlie2 DNA MER1_type 98 239 -2623 1336 183 39 45 chr13 92237000 92237333 -27507565 + Charlie2 DNA MER1_type 1855 2185 -677 5475 164 35 8 chr13 92237336 92238289 -27506609 + Tigger1 DNA MER2_type 1 978 -1440 5201 177 29 16 chr13 92238300 92239532 -27505366 - L1MA3 LINE L1 -2 6303 5062 3422 139 28 5 chr13 92239533 92240103 -27504795 + Tigger1 DNA MER2_type 961 1543 -875 1303 160 14 0 chr13 92240105 92240324 -27504574 + Tigger1 DNA MER2_type 2196 2417 -1 697 275 90 48 chr13 92240479 92241256 -27503642 - MER69 DNA AcHobo -259 2267 1458 319 328 49 0 chr13 92241252 92241374 -27503524 - MER69 DNA AcHobo -944 282 155 * 27 0 0 0 chr13 92241455 92241482 -27503416 + AT_rich Low_complexity Low_complexity 1 27 0 748 183 15 0 chr13 92241793 92241958 -27502940 - FLAM_A SINE Alu 0 167 1 2464 50 0 10 chr13 92242024 92242323 -27502575 - AluY SINE Alu -7 304 9 244 368 58 23 chr13 92242835 92243006 -27501892 + L2 LINE L2 1733 1909 -1405 223 365 43 52 chr13 92243428 92243967 -27500931 + L2 LINE L2 2262 2795 -519 1857 128 4 0 chr13 92244407 92244672 -27500226 + AluSx SINE Alu 11 276 -36 366 23 0 0 chr13 92244675 92244718 -27500180 + (CA)n Simple_repeat Simple_repeat 2 44 0 962 104 0 7 chr13 92246027 92246171 -27498727 + L1MA1 LINE L1 6160 6302 0 434 242 8 8 chr13 92246418 92246538 -27498360 - L1ME3A LINE L1 -213 5957 5838 3729 153 53 7 chr13 92246581 92247261 -27497637 - MER50 LTR ERV1 -23 711 1 268 289 19 51 chr13 92247261 92247417 -27497481 - L1ME3A LINE L1 -353 5809 5659 2986 122 17 13 chr13 92247452 92248091 -27496807 + LTR8 LTR ERV1 1 685 -6 3211 164 42 12 chr13 92248248 92248821 -27496077 - LTR59 LTR ERV1 -7 590 1 388 273 66 21 chr13 92248822 92249036 -27495862 - L1ME3A LINE L1 -724 5438 5216 * 893 237 16 2 chr13 92249031 92249553 -27495345 - L1MC3 LINE L1 -1792 5993 5425 598 275 110 34 chr13 92250219 92250692 -27494206 - L1MC3 LINE L1 -1979 4167 3659 380 281 51 102 chr13 92250799 92251172 -27493726 - L1MC3 LINE L1 -2712 3434 3081 744 261 110 28 chr13 92251330 92251759 -27493139 - L1ME1 LINE L1 -5 6161 5698 21 0 0 0 chr13 92252549 92252570 -27492328 + AT_rich Low_complexity Low_complexity 1 21 0 901 294 111 16 chr13 92252587 92252965 -27491933 - MLT1D LTR MaLR -2 503 90 1462 200 54 7 chr13 92252965 92253227 -27491671 + L1 LINE L1 3097 3388 -2758 207 0 0 0 chr13 92253227 92253250 -27491648 + (CA)n Simple_repeat Simple_repeat 2 24 0 1462 200 54 7 chr13 92253250 92253412 -27491486 + L1 LINE L1 3388 3541 -2605 275 197 16 0 chr13 92253876 92253937 -27490961 - MER53 DNA DNA -126 63 2 29 47 0 0 chr13 92254480 92254523 -27490375 + AT_rich Low_complexity Low_complexity 1 43 0 1509 209 103 37 chr13 92254701 92254919 -27489979 + MLT1D LTR MaLR 19 221 -284 1545 216 73 6 chr13 92254919 92255261 -27489637 + MLT1A1 LTR MaLR 1 365 0 1509 209 103 37 chr13 92255261 92255496 -27489402 + MLT1D LTR MaLR 221 502 -3 23 0 0 0 chr13 92255695 92255718 -27489180 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr13 92255761 92255803 -27489095 + AT_rich Low_complexity Low_complexity 1 42 0 252 0 0 0 chr13 92256025 92256053 -27488845 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6315 164 29 10 chr13 92256545 92258619 -27486279 - L1MA2 LINE L1 0 6304 4184 1991 86 8 8 chr13 92258619 92258887 -27486011 - AluY SINE Alu -16 295 28 6315 164 29 10 chr13 92258887 92259045 -27485853 - L1MA2 LINE L1 -2120 4184 4030 719 204 80 146 chr13 92259047 92259505 -27485393 + LTR28 LTR ERV1 1 1229 -526 4144 212 25 18 chr13 92259647 92260537 -27484361 + MER52-int LTR ERV1 1 4056 -1161 1452 213 21 7 chr13 92260550 92260836 -27484062 + MER52-int LTR ERV1 1003 1292 -5799 2302 87 3 3 chr13 92260854 92261166 -27483732 - MER11B LTR ERVK -14 1222 911 511 296 12 19 chr13 92311197 92311458 -27433440 + CT-rich Low_complexity Low_complexity 1 259 0 25 0 0 0 chr13 92311750 92311775 -27433123 + AT_rich Low_complexity Low_complexity 1 25 0 846 158 79 12 chr13 92312682 92312847 -27432051 - L1PB4 LINE L1 -198 5958 5783 2009 145 7 0 chr13 92312847 92313151 -27431747 - THE1B LTR MaLR 0 364 59 396 334 118 30 chr13 92313252 92313862 -27431036 - L1M4 LINE L1 -1078 5068 4405 2241 144 15 20 chr13 92314126 92314277 -27430621 - MER57A LTR ERV1 -5 398 248 2220 96 7 0 chr13 92314277 92314578 -27430320 + AluSc SINE Alu 2 304 -5 2241 144 15 20 chr13 92314578 92314821 -27430077 - MER57A LTR ERV1 -155 248 6 234 318 26 56 chr13 92315019 92315149 -27429749 - HAL1 LINE L1 -2173 334 213 1948 123 19 19 chr13 92315149 92315459 -27429439 + AluSx SINE Alu 1 310 -2 234 318 26 56 chr13 92315459 92315561 -27429337 - HAL1 LINE L1 -2294 213 109 1762 138 39 7 chr13 92316324 92316606 -27428292 + AluSx SINE Alu 1 291 -21 205 115 19 19 chr13 92316606 92316658 -27428240 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 35 0 0 chr13 92316979 92317008 -27427890 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 92317720 92317743 -27427155 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr13 92318666 92318706 -27426192 + (CA)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr13 92318705 92318730 -27426168 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 242 366 161 35 chr13 92318999 92319513 -27425385 + L2 LINE L2 347 925 -2389 * 518 310 50 12 chr13 92319507 92319749 -27425149 - MIR SINE MIR 0 262 12 357 24 0 0 chr13 92320978 92321020 -27423878 + (TA)n Simple_repeat Simple_repeat 2 43 0 345 359 41 12 chr13 92321600 92321770 -27423128 - HAL1 LINE L1 -1599 908 734 23 33 0 0 chr13 92322116 92322146 -27422752 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 92322388 92322416 -27422482 + AT_rich Low_complexity Low_complexity 1 28 0 12248 182 22 9 chr13 92322973 92326295 -27418603 - L1PA13 LINE L1 -6 6157 2804 2783 207 3 13 chr13 92326483 92327096 -27417802 - L1PA13 LINE L1 -3373 2773 2167 1790 174 33 42 chr13 92327568 92327929 -27416969 + MER47A DNA MER2_type 8 365 -1 301 277 154 45 chr13 92328840 92329132 -27415766 - L1MEc LINE L1 -4814 1582 1259 25 65 0 0 chr13 92329311 92329357 -27415541 + AT_rich Low_complexity Low_complexity 1 46 0 376 318 107 20 chr13 92329431 92329683 -27415215 - L1MEc LINE L1 -5285 920 647 387 41 0 0 chr13 92330490 92330539 -27414359 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr13 92331560 92331589 -27413309 + AT_rich Low_complexity Low_complexity 1 29 0 193 314 0 0 chr13 92331956 92332007 -27412891 + L2 LINE L2 3222 3272 0 1051 173 44 0 chr13 92332142 92332367 -27412531 - L1MA4 LINE L1 -5 6295 6061 393 283 96 37 chr13 92333322 92333509 -27411389 - LTR33 LTR ERVL -45 476 279 23 0 0 0 chr13 92334264 92334287 -27410611 + AT_rich Low_complexity Low_complexity 1 23 0 689 112 0 0 chr13 92334372 92334470 -27410428 + AluSq/x SINE Alu 31 128 -184 245 292 80 18 chr13 92334698 92334811 -27410087 + L3 LINE CR1 1276 1395 -182 229 284 37 12 chr13 92335222 92335303 -27409595 + L2 LINE L2 2601 2683 -631 350 269 215 0 chr13 92336442 92336572 -27408326 - MIR SINE MIR -27 235 78 192 77 0 0 chr13 92337272 92337298 -27407600 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 245 273 0 30 chr13 92337537 92337603 -27407295 + MIR SINE MIR 86 149 -113 492 258 8 8 chr13 92338528 92338660 -27406238 + L2 LINE L2 2633 2764 -550 21 0 0 0 chr13 92338732 92338753 -27406145 + AT_rich Low_complexity Low_complexity 1 21 0 6865 147 14 11 chr13 92338798 92341046 -27403852 - L1MA1 LINE L1 0 6302 4045 274 332 59 30 chr13 92341046 92341248 -27403650 + L2 LINE L2 2949 3156 -157 737 252 108 41 chr13 92341376 92341863 -27403035 - MER34 LTR ERV1 0 542 1 231 36 0 0 chr13 92341963 92341991 -27402907 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 38 61 0 0 chr13 92342634 92342700 -27402198 + AT_rich Low_complexity Low_complexity 1 66 0 3053 183 27 7 chr13 92343131 92343722 -27401176 + LTR26 LTR ERV1 1 603 0 21 36 0 0 chr13 92343889 92343917 -27400981 + AT_rich Low_complexity Low_complexity 1 28 0 184 122 49 0 chr13 92343951 92343992 -27400906 + (TA)n Simple_repeat Simple_repeat 2 44 0 27 29 0 0 chr13 92344047 92344081 -27400817 + AT_rich Low_complexity Low_complexity 1 34 0 1450 160 29 82 chr13 92344120 92344463 -27400435 + L1MC1 LINE L1 6002 6326 -7 28 0 0 0 chr13 92344577 92344605 -27400293 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 92345726 92345755 -27399143 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr13 92346234 92346276 -27398622 + AT_rich Low_complexity Low_complexity 1 42 0 340 276 9 91 chr13 92346442 92346663 -27398235 - L2 LINE L2 0 3313 3111 809 312 252 19 chr13 92346864 92347535 -27397363 - L2 LINE L2 -419 2895 2021 197 33 33 0 chr13 92347535 92347565 -27397333 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 809 312 252 19 chr13 92347565 92347662 -27397236 - L2 LINE L2 -1293 2021 1948 569 346 123 24 chr13 92347776 92348331 -27396567 - L2 LINE L2 0 3313 2708 862 179 112 15 chr13 92348512 92348708 -27396190 + MSTA LTR MaLR 214 428 0 21 36 0 0 chr13 92349124 92349152 -27395746 + AT_rich Low_complexity Low_complexity 1 28 0 2498 27 0 3 chr13 92349888 92350182 -27394716 + AluYa5 SINE Alu 1 293 -18 1750 158 6 19 chr13 92351068 92351421 -27393477 - MER4A LTR ERV1 0 664 257 591 134 21 10 chr13 92351417 92351514 -27393384 - MER4A LTR ERV1 -566 98 1 * 378 0 0 0 chr13 92351765 92351807 -27393091 + (CA)n Simple_repeat Simple_repeat 1 42 0 3439 173 52 6 chr13 92351811 92352486 -27392412 + MER67C LTR ERV1 5 710 0 253 246 16 0 chr13 92352486 92352547 -27392351 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 243 357 21 0 chr13 92352490 92352633 -27392265 + (CATA)n Simple_repeat Simple_repeat 4 149 0 * 21 0 0 0 chr13 92353530 92353551 -27391347 + AT_rich Low_complexity Low_complexity 1 21 0 182 432 0 0 chr13 92354573 92354661 -27390237 - MIR SINE MIR -122 140 53 22 70 0 0 chr13 92354981 92355024 -27389874 + AT_rich Low_complexity Low_complexity 1 43 0 3588 206 6 23 chr13 92355624 92356396 -27388502 - MER49 LTR ERV1 -10 913 153 183 146 0 0 chr13 92357345 92357386 -27387512 + (TC)n Simple_repeat Simple_repeat 2 42 0 1766 227 34 18 chr13 92357471 92357961 -27386937 - MLT1D LTR MaLR -10 580 1 1606 249 33 27 chr13 92357970 92358678 -27386220 - L1MC/D LINE L1 -743 5797 5159 662 225 115 61 chr13 92358777 92358899 -27385999 - L1MDa LINE L1 -3510 3030 2916 2034 120 0 13 chr13 92358899 92359199 -27385699 - AluSx SINE Alu -16 296 1 662 225 115 61 chr13 92359199 92359679 -27385219 - L1MDa LINE L1 -3624 2916 2372 6612 155 18 21 chr13 92359694 92359791 -27385107 - L1MA2 LINE L1 0 6304 6208 2230 86 0 13 chr13 92359791 92360092 -27384806 + AluY SINE Alu 1 297 -14 6612 155 18 21 chr13 92360092 92360175 -27384723 - L1MA2 LINE L1 -96 6208 6126 1869 153 0 3 chr13 92360175 92360483 -27384415 - AluSx SINE Alu 0 307 1 6612 155 18 21 chr13 92360483 92362564 -27382334 - L1MA2 LINE L1 -178 6126 4047 21 0 0 0 chr13 92362589 92362610 -27382288 + AT_rich Low_complexity Low_complexity 1 21 0 1295 253 86 66 chr13 92362653 92362951 -27381947 - L1MDa LINE L1 -4325 2215 1924 183 100 0 0 chr13 92362951 92362981 -27381917 + (TG)n Simple_repeat Simple_repeat 2 31 0 1733 185 65 0 chr13 92362991 92363332 -27381566 - MER47A DNA MER2_type -3 363 1 1295 253 86 66 chr13 92363332 92364019 -27380879 - L1MDa LINE L1 -4624 1916 1199 21 0 0 0 chr13 92364645 92364666 -27380232 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 92365381 92365416 -27379482 + AT_rich Low_complexity Low_complexity 1 35 0 628 145 26 0 chr13 92365930 92366047 -27378851 + Tigger1 DNA MER2_type 1462 1581 -837 * 2666 218 224 26 chr13 92366042 92366886 -27378012 + LTR28 LTR ERV1 10 1020 0 3092 179 182 3 chr13 92366887 92367592 -27377306 + Tigger1 DNA MER2_type 1563 2393 -25 1903 162 7 3 chr13 92367692 92368001 -27376897 + AluJb SINE Alu 1 310 -2 653 262 16 4 chr13 92368049 92368297 -27376601 + L1MEc LINE L1 2160 2410 -3986 979 251 153 79 chr13 92368336 92368504 -27376394 + L1M4 LINE L1 3770 3924 -2222 1814 102 18 4 chr13 92368504 92368778 -27376120 - L1PA14 LINE L1 0 6161 5884 979 251 153 79 chr13 92368778 92369601 -27375297 + L1M4 LINE L1 3924 4887 -1259 2467 60 0 0 chr13 92369601 92369899 -27374999 - AluY SINE Alu -13 298 1 979 251 153 79 chr13 92369899 92370244 -27374654 + L1M4 LINE L1 4887 5205 -941 21 0 0 0 chr13 92371617 92371638 -27373260 + AT_rich Low_complexity Low_complexity 1 21 0 455 103 0 103 chr13 92372011 92372098 -27372800 + LTR23 LTR ERV1 158 235 -202 1713 124 4 0 chr13 92372098 92372365 -27372533 - L1PB1 LINE L1 -3 6148 5881 234 299 96 48 chr13 92372365 92372700 -27372198 - L1ME LINE L1 -470 5700 5350 30 0 0 0 chr13 92374148 92374178 -27370720 + AT_rich Low_complexity Low_complexity 1 30 0 471 236 0 47 chr13 92374430 92374557 -27370341 + MLT2C1 LTR ERVL 269 389 -8 7255 193 85 21 chr13 92374607 92376200 -27368698 + MER52A LTR ERV1 1 1755 0 258 242 142 0 chr13 92376201 92376321 -27368577 - L1MCa LINE L1 -4224 2340 2204 1607 278 56 42 chr13 92376374 92377108 -27367790 - L1MCa LINE L1 -5296 749 6 2382 251 70 38 chr13 92377175 92379501 -27365397 - L1MDa LINE L1 -2848 3692 1300 2812 240 63 53 chr13 92379504 92380819 -27364079 - L1MD1 LINE L1 -1 6635 5296 9838 195 24 18 chr13 92380846 92383919 -27360979 - L1MA8 LINE L1 -3 6288 3205 1265 264 57 33 chr13 92383921 92384030 -27360868 - L1MD1 LINE L1 -6103 437 332 208 0 62 0 chr13 92384030 92384062 -27360836 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1265 264 57 33 chr13 92384062 92384377 -27360521 - L1MD1 LINE L1 -6208 332 3 1204 265 63 26 chr13 92384368 92384825 -27360073 - L1MDa LINE L1 -5233 1310 837 * 346 282 54 98 chr13 92385263 92385579 -27359319 - L1MDa LINE L1 -6196 344 43 211 388 110 11 chr13 92386188 92386451 -27358447 - L2 LINE L2 -221 3092 2804 27 49 0 0 chr13 92386764 92386805 -27358093 + AT_rich Low_complexity Low_complexity 1 41 0 237 307 52 64 chr13 92386920 92387171 -27357727 + L1ME3A LINE L1 58 305 -5814 438 280 76 89 chr13 92388893 92389343 -27355555 + L1ME3A LINE L1 4721 5164 -965 2122 128 3 0 chr13 92389423 92389721 -27355177 + AluSx SINE Alu 1 299 -13 410 248 49 137 chr13 92389736 92389839 -27355059 + L1ME3A LINE L1 5738 5848 -305 2299 62 3 14 chr13 92389839 92390159 -27354739 + AluY SINE Alu 3 319 0 410 248 49 137 chr13 92390159 92390484 -27354414 + L1ME3A LINE L1 5848 6131 -22 42 0 0 0 chr13 92391613 92391655 -27353243 + AT_rich Low_complexity Low_complexity 1 42 0 4220 200 26 45 chr13 92391740 92392293 -27352605 - L1MA9 LINE L1 -5 6307 5784 351 0 0 0 chr13 92392293 92392332 -27352566 + (TA)n Simple_repeat Simple_repeat 2 40 0 4220 200 26 45 chr13 92392332 92392892 -27352006 - L1MA9 LINE L1 -528 5784 5215 * 4780 214 46 28 chr13 92392890 92394150 -27350748 + L1MA9 LINE L1 3934 5216 -930 902 210 5 24 chr13 92395147 92395352 -27349546 + L1PA16 LINE L1 5957 6157 -9 771 213 7 0 chr13 92395434 92395584 -27349314 - MER2 DNA MER2_type -6 339 189 12117 168 39 21 chr13 92395585 92397951 -27346947 - Tigger1 DNA MER2_type -1 2417 11 853 200 32 0 chr13 92397988 92398143 -27346755 - MER2 DNA MER2_type -184 161 2 243 0 0 0 chr13 92398146 92398173 -27346725 + (TG)n Simple_repeat Simple_repeat 2 28 0 2266 118 16 31 chr13 92398350 92398731 -27346167 + THE1C LTR MaLR 1 375 0 1637 216 19 8 chr13 92399585 92399946 -27344952 - MLT1A1 LTR MaLR 0 365 1 41 58 0 0 chr13 92400387 92400456 -27344442 + AT_rich Low_complexity Low_complexity 1 69 0 361 348 25 0 chr13 92401522 92401726 -27343172 + MER20B DNA MER1_type 157 365 -418 2044 105 0 7 chr13 92402141 92402449 -27342449 + AluY SINE Alu 1 306 0 480 285 108 52 chr13 92402557 92402784 -27342114 + HAL1 LINE L1 809 1059 -1448 2057 116 10 13 chr13 92402784 92403086 -27341812 + AluSq SINE Alu 1 301 -12 480 285 108 52 chr13 92403086 92403163 -27341735 + HAL1 LINE L1 1059 1130 -1377 397 252 144 18 chr13 92403237 92403515 -27341383 + HAL1 LINE L1 2001 2313 -194 21 36 0 0 chr13 92403682 92403710 -27341188 + AT_rich Low_complexity Low_complexity 1 28 0 182 143 63 0 chr13 92403812 92403875 -27341023 + (TA)n Simple_repeat Simple_repeat 1 67 0 298 276 77 13 chr13 92404784 92404940 -27339958 + L1ME3A LINE L1 5994 6159 -11 5547 205 158 28 chr13 92405273 92406766 -27338132 - MER52A LTR ERV1 0 1755 1 276 170 19 0 chr13 92406846 92406899 -27337999 - MER67D LTR ERV1 -28 486 433 21 36 0 0 chr13 92407905 92407933 -27336965 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr13 92408164 92408188 -27336710 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 29 28 0 0 chr13 92408189 92408225 -27336673 + AT_rich Low_complexity Low_complexity 1 36 0 1020 178 57 26 chr13 92409205 92409433 -27335465 + MER44D DNA MER2_type 4 508 -101 923 229 172 0 chr13 92409433 92409660 -27335238 + Tigger7 DNA MER2_type 2 267 -2220 502 101 0 22 chr13 92409663 92409752 -27335146 + (TA)n Simple_repeat Simple_repeat 2 88 0 327 288 51 17 chr13 92409930 92410048 -27334850 - MIR SINE MIR -23 239 118 581 189 110 110 chr13 92410107 92410424 -27334474 + MER33 DNA MER1_type 2 318 -6 234 299 11 51 chr13 92410939 92411116 -27333782 - L1MCc LINE L1 -6227 196 27 229 316 26 26 chr13 92411405 92411519 -27333379 + MIR SINE MIR 119 232 -30 25 65 0 0 chr13 92411861 92411907 -27332991 + AT_rich Low_complexity Low_complexity 1 46 0 180 125 0 0 chr13 92414756 92414788 -27330110 + (TAG)n Simple_repeat Simple_repeat 1 32 0 251 272 0 0 chr13 92415080 92415161 -27329737 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr13 92415273 92415294 -27329604 + AT_rich Low_complexity Low_complexity 1 21 0 286 268 12 12 chr13 92416719 92416801 -27328097 + MER63 DNA MER1_type 981 1062 0 348 133 0 0 chr13 92417362 92417422 -27327476 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 1280 190 53 8 chr13 92417429 92417831 -27327067 + LOR1b LTR ERV1 9 461 0 204 254 0 0 chr13 92417831 92417890 -27327008 + GA-rich Low_complexity Low_complexity 2 60 0 24 0 0 0 chr13 92418903 92418927 -27325971 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 92419402 92419430 -27325468 + AT_rich Low_complexity Low_complexity 1 28 0 2072 144 91 10 chr13 92419844 92420239 -27324659 - MSTA LTR MaLR 0 428 2 21 71 0 0 chr13 92420822 92420864 -27324034 + AT_rich Low_complexity Low_complexity 1 42 0 182 302 47 47 chr13 92421838 92421924 -27322974 - L3 LINE CR1 -204 1373 1288 22 0 0 0 chr13 92422110 92422132 -27322766 + AT_rich Low_complexity Low_complexity 1 22 0 730 304 136 32 chr13 92422383 92422846 -27322052 - L2 LINE L2 -380 2934 2424 339 333 57 47 chr13 92422862 92423249 -27321649 + L2 LINE L2 1868 2258 -1056 1581 142 75 0 chr13 92423286 92423540 -27321358 + AluSx SINE Alu 1 273 -39 243 0 0 0 chr13 92423548 92423575 -27321323 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 197 278 19 0 chr13 92423853 92423907 -27320991 + L2 LINE L2 2599 2653 -661 2402 67 0 3 chr13 92424968 92425268 -27319630 - AluY SINE Alu -12 299 1 24 0 0 0 chr13 92425632 92425656 -27319242 + AT_rich Low_complexity Low_complexity 1 24 0 32 67 0 0 chr13 92426403 92426463 -27318435 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr13 92426536 92426559 -27318339 + AT_rich Low_complexity Low_complexity 1 23 0 2325 178 35 43 chr13 92426838 92427360 -27317538 + L1MA10 LINE L1 5816 6333 -1 469 216 31 0 chr13 92427642 92427739 -27317159 + MSTD LTR MaLR 1 100 -296 485 314 8 0 chr13 92427750 92427874 -27317024 - L1MDa LINE L1 -6278 262 138 1148 186 38 15 chr13 92428115 92428358 -27316540 + MSTD LTR MaLR 184 396 0 1367 270 29 5 chr13 92428785 92429163 -27315735 + L1MDa LINE L1 138 524 -6016 343 213 176 9 chr13 92429265 92429373 -27315525 + MLT1F1 LTR MaLR 365 490 -77 181 197 16 98 chr13 92431029 92431090 -27313808 + L2 LINE L2 93 148 -3166 3670 212 41 24 chr13 92431171 92432844 -27312054 - L1MB1 LINE L1 -68 6100 4388 1033 235 54 43 chr13 92432844 92432896 -27312002 - MLT1A2 LTR MaLR 0 374 324 231 88 0 0 chr13 92432896 92432930 -27311968 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1653 177 6 54 chr13 92432937 92433254 -27311644 + AluJo SINE Alu 1 302 -10 1033 235 54 43 chr13 92433254 92433563 -27311335 - MLT1A2 LTR MaLR -55 319 1 2781 269 43 59 chr13 92433564 92434763 -27310135 - MLT1A2-int LTR MaLR -1 1370 191 375 279 159 9 chr13 92435717 92435943 -27308955 + L1M4 LINE L1 4050 4309 -1837 * 736 335 38 21 chr13 92435932 92436350 -27308548 + L1MA10 LINE L1 173 597 -5716 1747 277 97 29 chr13 92436505 92436594 -27308304 + L1MA10 LINE L1 777 859 -5523 2121 172 18 48 chr13 92436594 92437029 -27307869 + MSTA LTR MaLR 3 424 -4 8698 191 21 3 chr13 92437033 92438655 -27306243 + MSTA-int LTR MaLR 1 1651 0 2398 159 34 2 chr13 92438655 92439070 -27305828 + MSTA LTR MaLR 1 428 0 1747 277 97 29 chr13 92439070 92439776 -27305122 + L1MA10 LINE L1 861 1549 -4833 1273 176 9 13 chr13 92439776 92440009 -27304889 - MER46A DNA MER2_type 0 236 5 1747 277 97 29 chr13 92440009 92440506 -27304392 + L1MA10 LINE L1 1549 2011 -4371 4115 224 35 72 chr13 92440515 92440942 -27303956 + L1MA10 LINE L1 3428 3869 -2701 3235 108 49 91 chr13 92440942 92441387 -27303511 - MER4B LTR ERV1 0 610 199 2171 112 3 0 chr13 92441387 92441682 -27303216 - AluSg SINE Alu -14 296 1 3235 108 49 91 chr13 92441682 92441873 -27303025 - MER4B LTR ERV1 -411 199 1 4115 224 35 72 chr13 92441873 92442425 -27302473 + L1MA10 LINE L1 3869 4440 -2130 1955 119 4 7 chr13 92442425 92442702 -27302196 + AluSx SINE Alu 1 276 -36 297 0 0 0 chr13 92442702 92442735 -27302163 + (TAA)n Simple_repeat Simple_repeat 2 34 0 4115 224 35 72 chr13 92442735 92443220 -27301678 + L1MA10 LINE L1 4439 4940 -1630 1500 226 3 0 chr13 92443220 92443508 -27301390 + AluJb SINE Alu 3 291 -21 4115 224 35 72 chr13 92443508 92445336 -27299562 + L1MA10 LINE L1 4940 6567 -3 982 267 89 29 chr13 92445333 92445948 -27298950 + L1M4 LINE L1 4275 4926 -1220 * 226 211 0 0 chr13 92446915 92446953 -27297945 - MIR SINE MIR -137 125 88 703 211 5 93 chr13 92447056 92447260 -27297638 + MER20 DNA MER1_type 23 208 -11 521 233 53 48 chr13 92447303 92447429 -27297469 + MER20 DNA MER1_type 91 219 0 29 90 0 0 chr13 92447755 92447833 -27297065 + AT_rich Low_complexity Low_complexity 1 78 0 904 188 51 35 chr13 92448518 92448715 -27296183 + L1MC1 LINE L1 5982 6181 -152 826 176 11 69 chr13 92448730 92448837 -27296061 + L1MC1 LINE L1 6157 6250 -83 6592 151 26 56 chr13 92448837 92450175 -27294723 - HSMAR2 DNA Mariner -2 1300 3 826 176 11 69 chr13 92450175 92450255 -27294643 + L1MC1 LINE L1 6250 6333 0 197 163 20 0 chr13 92450288 92450337 -27294561 + CT-rich Low_complexity Low_complexity 1 50 0 27 49 0 0 chr13 92450676 92450717 -27294181 + AT_rich Low_complexity Low_complexity 1 41 0 252 289 126 37 chr13 92451297 92451487 -27293411 + L1MCc LINE L1 984 1190 -5233 413 360 142 23 chr13 92451869 92452392 -27292506 + L2 LINE L2 2093 2677 -637 2101 73 22 0 chr13 92452482 92452757 -27292141 - AluSq SINE Alu -10 303 23 210 176 0 0 chr13 92453027 92453078 -27291820 + (TG)n Simple_repeat Simple_repeat 2 52 0 314 333 111 0 chr13 92453092 92453209 -27291689 + L2 LINE L2 3179 3308 -5 41 36 0 0 chr13 92453263 92453318 -27291580 + AT_rich Low_complexity Low_complexity 1 55 0 1635 223 5 27 chr13 92453414 92453787 -27291111 - MLT1A1 LTR MaLR 0 365 1 5662 104 2 11 chr13 92455448 92456278 -27288620 + L1PA13 LINE L1 5341 6163 0 24 0 0 0 chr13 92456616 92456640 -27288258 + AT_rich Low_complexity Low_complexity 1 24 0 19132 33 2 3 chr13 92457144 92459487 -27285411 - L1PA3 LINE L1 -1680 4466 2126 7765 23 0 0 chr13 92459487 92461178 -27283720 + L1PA3 LINE L1 4464 6154 -1 31 0 0 0 chr13 92461555 92461586 -27283312 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr13 92462049 92462090 -27282808 + AT_rich Low_complexity Low_complexity 1 41 0 27 29 0 0 chr13 92462538 92462572 -27282326 + AT_rich Low_complexity Low_complexity 1 34 0 191 302 175 0 chr13 92462996 92463059 -27281839 - L2 LINE L2 -45 3227 3154 187 326 84 21 chr13 92464014 92464299 -27280599 - L2 LINE L2 -1356 1958 1656 231 281 22 11 chr13 92464451 92464540 -27280358 - L1MC4 LINE L1 -1339 6703 6614 303 295 67 57 chr13 92464860 92465053 -27279845 - L2 LINE L2 -1 3312 3118 323 291 0 0 chr13 92465356 92465435 -27279463 + MER5A DNA MER1_type 31 109 -80 575 250 82 8 chr13 92465564 92465832 -27279066 - Charlie5 DNA MER1_type 0 2616 2329 496 221 25 0 chr13 92465827 92465949 -27278949 - Charlie5 DNA MER1_type -2471 141 17 * 3209 225 79 68 chr13 92465955 92466771 -27278127 + L1MC2 LINE L1 3865 4671 -1673 1428 227 10 7 chr13 92466771 92466900 -27277998 + AluJb SINE Alu 1 128 -184 292 22 44 0 chr13 92466900 92466945 -27277953 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 1428 227 10 7 chr13 92466945 92467119 -27277779 + AluJb SINE Alu 128 305 -7 2240 111 0 0 chr13 92467129 92467427 -27277471 + AluSg SINE Alu 1 298 -12 3209 225 79 68 chr13 92467427 92467978 -27276920 + L1MC2 LINE L1 4679 5223 -1121 2560 174 22 25 chr13 92467978 92468534 -27276364 + L1MA7 LINE L1 5738 6291 0 3209 225 79 68 chr13 92468534 92469185 -27275713 + L1MC2 LINE L1 5223 5959 -385 312 28 0 0 chr13 92469185 92469221 -27275677 + tRNA-Gly-GGC tRNA tRNA 1 36 -38 3209 225 79 68 chr13 92469221 92469370 -27275528 + L1MC2 LINE L1 5959 6105 -239 520 191 30 38 chr13 92469386 92469517 -27275381 + L1MC2 LINE L1 6206 6335 -9 192 316 88 15 chr13 92470495 92470631 -27274267 - L2 LINE L2 -935 2379 2234 317 297 18 28 chr13 92471656 92471890 -27273008 + CT-rich Low_complexity Low_complexity 1 231 0 212 303 9 28 chr13 92472243 92472352 -27272546 + CT-rich Low_complexity Low_complexity 1 107 0 2342 78 3 3 chr13 92473460 92473767 -27271131 - AluSp SINE Alu -6 307 1 27 29 0 0 chr13 92473830 92473864 -27271034 + AT_rich Low_complexity Low_complexity 1 34 0 285 286 186 15 chr13 92475405 92475766 -27269132 - MER31B LTR ERV1 0 466 3 279 0 0 0 chr13 92476085 92476116 -27268782 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2133 89 11 0 chr13 92476119 92476400 -27268498 - AluSq SINE Alu -29 284 1 1722 144 74 3 chr13 92477263 92477547 -27267351 + AluSx SINE Alu 1 304 -8 31 26 0 0 chr13 92477788 92477826 -27267072 + AT_rich Low_complexity Low_complexity 1 38 0 267 290 76 35 chr13 92480890 92481035 -27263863 + L1ME LINE L1 5572 5722 -440 22 0 0 0 chr13 92481936 92481958 -27262940 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 92482647 92482675 -27262223 + AT_rich Low_complexity Low_complexity 1 28 0 784 219 50 13 chr13 92482680 92482918 -27261980 - L1MA7 LINE L1 -5 6286 6040 2243 109 0 0 chr13 92483145 92483458 -27261440 - L1PA7 LINE L1 -466 5702 5390 1780 116 122 57 chr13 92483456 92483810 -27261088 + L1PA7 LINE L1 5702 6078 -76 * 697 158 128 8 chr13 92483987 92484144 -27260754 + AluSg/x SINE Alu 131 303 0 31 0 0 0 chr13 92484166 92484197 -27260701 + AT_rich Low_complexity Low_complexity 1 31 0 680 204 0 35 chr13 92484522 92484664 -27260234 + MSTB1 LTR MaLR 296 432 0 566 298 106 37 chr13 92484665 92485419 -27259479 - L1MDa LINE L1 -4510 1705 1000 839 272 49 37 chr13 92485563 92485887 -27259011 - MER93a LTR ERV1 -1 401 74 361 252 59 42 chr13 92485992 92486111 -27258787 - L1MDa LINE L1 -5469 927 807 948 291 90 2 chr13 92486158 92486557 -27258341 - L1MDa LINE L1 -5582 814 381 3167 188 16 50 chr13 92486575 92487305 -27257593 - MER54A LTR ERVL 0 901 4 494 306 88 18 chr13 92487326 92487610 -27257288 - L1MDa LINE L1 -6066 330 27 1573 155 87 33 chr13 92487710 92488045 -27256853 - MER47A DNA MER2_type 0 366 14 2334 90 0 0 chr13 92488453 92488765 -27256133 + AluSx SINE Alu 1 312 0 388 284 34 69 chr13 92488873 92489193 -27255705 + L1MEc LINE L1 1536 1844 -4552 233 272 25 12 chr13 92491004 92491085 -27253813 - MER63 DNA MER1_type 0 1061 980 25 65 0 0 chr13 92494833 92494879 -27250019 + AT_rich Low_complexity Low_complexity 1 46 0 29 32 0 0 chr13 92495200 92495231 -27249667 + AT_rich Low_complexity Low_complexity 1 31 0 231 204 0 0 chr13 92496039 92496088 -27248810 + (TA)n Simple_repeat Simple_repeat 2 50 0 240 237 41 107 chr13 92496088 92496150 -27248748 - L1ME LINE L1 -258 5895 5831 184 39 39 0 chr13 92496150 92496176 -27248722 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2173 79 3 14 chr13 92496178 92496470 -27248428 - AluY SINE Alu -20 291 3 240 237 41 107 chr13 92496470 92496573 -27248325 - L1ME LINE L1 -323 5830 5738 2031 136 3 0 chr13 92496592 92496886 -27248012 - AluSx SINE Alu -17 295 1 417 282 76 89 chr13 92496966 92497416 -27247482 - L1ME LINE L1 -965 5164 4721 232 315 52 64 chr13 92499140 92499391 -27245507 - L1ME LINE L1 -5814 305 58 21 0 0 0 chr13 92500092 92500113 -27244785 + AT_rich Low_complexity Low_complexity 1 21 0 272 294 52 0 chr13 92501011 92501164 -27243734 + (TATATG)n Simple_repeat Simple_repeat 3 163 0 3435 169 53 6 chr13 92501169 92501833 -27243065 - MER67C LTR ERV1 -11 699 5 360 0 0 0 chr13 92501837 92501877 -27243021 + (TG)n Simple_repeat Simple_repeat 1 40 0 527 141 20 30 chr13 92502128 92502227 -27242671 + MER4A LTR ERV1 1 98 -566 * 1750 161 6 19 chr13 92502223 92502576 -27242322 + MER4A LTR ERV1 257 664 0 2026 98 7 13 chr13 92504177 92504483 -27240415 - AluSp SINE Alu -9 304 1 27 29 0 0 chr13 92504546 92504580 -27240318 + AT_rich Low_complexity Low_complexity 1 34 0 711 270 113 26 chr13 92506334 92506794 -27238104 - L1MDa LINE L1 -4842 1698 1199 21 0 0 0 chr13 92507420 92507441 -27237457 + AT_rich Low_complexity Low_complexity 1 21 0 628 145 26 0 chr13 92508704 92508821 -27236077 + Tigger1 DNA MER2_type 1462 1581 -837 * 1818 248 230 34 chr13 92508816 92509651 -27235247 + LTR28 LTR ERV1 10 1008 -12 4579 179 17 12 chr13 92510731 92512258 -27232640 + L1MA2 LINE L1 4610 6143 -161 1994 130 0 13 chr13 92512258 92512558 -27232340 + AluSx SINE Alu 1 296 -16 1513 255 34 29 chr13 92512779 92513488 -27231410 + L1MC/D LINE L1 4765 5478 -743 1785 230 40 15 chr13 92513497 92513987 -27230911 + MLT1D LTR MaLR 1 621 -3 183 146 0 0 chr13 92514072 92514113 -27230785 + (GA)n Simple_repeat Simple_repeat 2 42 0 3530 210 6 23 chr13 92515062 92515834 -27229064 + MER49 LTR ERV1 153 913 -10 182 432 0 0 chr13 92516797 92516885 -27228013 + MIR SINE MIR 53 140 -122 21 0 0 0 chr13 92517874 92517895 -27227003 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 92519206 92519227 -27225671 + AT_rich Low_complexity Low_complexity 1 21 0 602 202 9 0 chr13 92519307 92519416 -27225482 - MSTB LTR MaLR -316 110 1 * 653 191 15 8 chr13 92519416 92519546 -27225352 + MLT1D LTR MaLR 375 505 0 234 243 45 45 chr13 92520515 92520626 -27224272 + MER5C DNA MER1_type 108 218 -106 2151 264 64 43 chr13 92520648 92521526 -27223372 + L1M4c LINE L1 413 1226 -5087 1069 189 96 68 chr13 92521526 92521806 -27223092 + AluJo SINE Alu 1 288 -14 2151 264 64 43 chr13 92521806 92522389 -27222509 + L1M4c LINE L1 1226 1795 -4518 21 0 0 0 chr13 92522654 92522675 -27222223 + AT_rich Low_complexity Low_complexity 1 21 0 835 156 0 46 chr13 92522792 92522965 -27221933 - SVA Other Other -710 676 512 606 218 112 55 chr13 92522986 92523298 -27221600 + L1M4c LINE L1 2151 2480 -3904 1433 298 17 2 chr13 92523350 92523810 -27221088 + L1M4c LINE L1 2464 2930 -3452 1152 281 56 17 chr13 92523819 92524153 -27220745 + L1M4c LINE L1 4145 4504 -1878 279 0 0 0 chr13 92524153 92524184 -27220714 + (CA)n Simple_repeat Simple_repeat 1 31 0 1152 281 56 17 chr13 92524184 92524315 -27220583 + L1M4c LINE L1 4504 4628 -1754 1009 244 57 52 chr13 92524318 92524687 -27220211 + MLT1A2 LTR MaLR 4 374 0 2835 262 64 65 chr13 92524691 92526059 -27218839 + MLT1A2-int LTR MaLR 5 1370 -1 951 242 56 46 chr13 92526060 92526366 -27218532 + MLT1A2 LTR MaLR 1 309 -65 2372 90 0 0 chr13 92526369 92526670 -27218228 - AluY SINE Alu -10 301 1 262 254 148 104 chr13 92526677 92527015 -27217883 + L1M4c LINE L1 5089 5441 -941 401 260 10 10 chr13 92527877 92527977 -27216921 - MLT1A2-int LTR MaLR -1267 104 5 1030 239 57 52 chr13 92527981 92528350 -27216548 - MLT1A2 LTR MaLR 0 374 4 1419 256 49 15 chr13 92528353 92528484 -27216414 - L1M4c LINE L1 -1754 4216 4091 315 0 0 0 chr13 92528484 92528519 -27216379 + (TG)n Simple_repeat Simple_repeat 1 35 0 1419 256 49 15 chr13 92528519 92528855 -27216043 - L1M4c LINE L1 -1879 4091 3733 1430 298 17 2 chr13 92528864 92529324 -27215574 - L1M4c LINE L1 -3452 2518 2052 623 221 109 51 chr13 92529376 92529688 -27215210 - L1M4c LINE L1 -3904 2068 1739 835 156 0 46 chr13 92529709 92529882 -27215016 + SVA Other Other 512 676 -710 21 0 0 0 chr13 92529999 92530020 -27214878 + AT_rich Low_complexity Low_complexity 1 21 0 2137 266 71 51 chr13 92530285 92530868 -27214030 - L1M4c LINE L1 -4518 1383 813 1081 186 96 68 chr13 92530868 92531148 -27213750 - AluJo SINE Alu -14 288 1 2137 266 71 51 chr13 92531148 92532027 -27212871 - L1M4c LINE L1 -5088 813 1 234 243 45 45 chr13 92532049 92532160 -27212738 - MER5C DNA MER1_type -106 218 108 653 191 15 8 chr13 92533129 92533259 -27211639 - MLT1D LTR MaLR 0 505 375 2039 207 57 5 chr13 92533259 92533664 -27211234 + MSTB LTR MaLR 1 426 0 773 289 80 31 chr13 92533664 92534011 -27210887 - MLT1D LTR MaLR -126 379 16 412 230 37 9 chr13 92534665 92534796 -27210102 + L1MCa LINE L1 1289 1624 -4983 243 0 0 0 chr13 92534798 92534825 -27210073 + (TA)n Simple_repeat Simple_repeat 1 27 0 1108 228 8 111 chr13 92535427 92535805 -27209093 + L1MDa LINE L1 22 360 -6180 2292 107 0 3 chr13 92536074 92536384 -27208514 - AluSc SINE Alu 0 309 1 238 332 124 33 chr13 92536599 92536873 -27208025 - L2 LINE L2 -1 3312 3014 1176 152 72 47 chr13 92536950 92537226 -27207672 - AluJo SINE Alu -21 291 9 213 200 56 11 chr13 92537339 92537429 -27207469 + (TA)n Simple_repeat Simple_repeat 2 95 0 40 0 0 0 chr13 92537436 92537476 -27207422 + AT_rich Low_complexity Low_complexity 1 40 0 225 108 0 0 chr13 92538099 92538136 -27206762 + (TTA)n Simple_repeat Simple_repeat 2 38 0 867 255 8 111 chr13 92538763 92539140 -27205758 + L1MDa LINE L1 22 359 -6181 2055 118 0 4 chr13 92539351 92539631 -27205267 - AluSc SINE Alu -30 279 1 238 332 124 33 chr13 92539846 92540120 -27204778 - L2 LINE L2 -1 3312 3014 1176 152 72 47 chr13 92540197 92540473 -27204425 - AluJo SINE Alu -21 291 9 385 253 0 0 chr13 92540644 92540723 -27204175 + C-rich Low_complexity Low_complexity 1 79 0 26 71 0 0 chr13 92540731 92540773 -27204125 + GC_rich Low_complexity Low_complexity 1 42 0 2659 77 0 0 chr13 92591496 92591848 -27153050 + L1PA7 LINE L1 5803 6154 0 1565 246 106 74 chr13 92591938 92592563 -27152335 + MLT1E1 LTR MaLR 1 645 -9 247 363 47 68 chr13 92592572 92592911 -27151987 + L2 LINE L2 1142 1473 -1841 209 200 0 0 chr13 92593757 92593797 -27151101 + CT-rich Low_complexity Low_complexity 3 42 0 4711 190 27 24 chr13 92593901 92594511 -27150387 - L1MA7 LINE L1 -11 6280 5664 2526 127 6 0 chr13 92594511 92594873 -27150025 - THE1B LTR MaLR 0 364 1 4711 190 27 24 chr13 92594873 92595286 -27149612 - L1MA7 LINE L1 -627 5664 5254 1941 160 10 0 chr13 92595381 92595681 -27149217 + AluSx SINE Alu 1 303 -9 29 78 0 0 chr13 92595943 92596007 -27148891 + AT_rich Low_complexity Low_complexity 1 64 0 332 320 124 59 chr13 92596128 92596515 -27148383 + L1MDa LINE L1 811 1222 -5308 987 313 139 9 chr13 92597317 92597864 -27147034 + L2 LINE L2 1729 2346 -968 643 258 126 87 chr13 92597865 92597986 -27146912 + MLT1E LTR MaLR 1 116 -477 2123 114 4 0 chr13 92597986 92598298 -27146600 + AluSg SINE Alu 1 313 0 643 258 126 87 chr13 92598298 92598532 -27146366 + MLT1E LTR MaLR 116 371 -222 257 184 0 0 chr13 92598523 92598572 -27146326 + MLT1E1 LTR MaLR 606 654 0 * 2328 148 46 7 chr13 92598573 92598984 -27145914 + MSTA LTR MaLR 1 427 -1 7676 174 52 46 chr13 92598986 92600627 -27144271 + MSTA-int LTR MaLR 2 1651 0 2662 133 31 0 chr13 92600627 92601042 -27143856 + MSTA LTR MaLR 1 428 0 1132 266 108 11 chr13 92601191 92601544 -27143354 + MLT1E LTR MaLR 207 593 0 3182 155 2 8 chr13 92601602 92602138 -27142760 - L1PA15 LINE L1 0 6165 5633 620 361 144 10 chr13 92602153 92602965 -27141933 + L2 LINE L2 2367 3297 -16 26 0 0 0 chr13 92602991 92603017 -27141881 + AT_rich Low_complexity Low_complexity 1 26 0 303 224 0 0 chr13 92603639 92603715 -27141183 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 39 74 0 0 chr13 92603747 92603828 -27141070 + AT_rich Low_complexity Low_complexity 1 81 0 279 371 0 9 chr13 92603975 92604091 -27140807 + L2 LINE L2 3191 3305 -8 808 320 20 54 chr13 92604253 92604694 -27140204 + LTR16C LTR ERVL 66 491 0 378 0 0 0 chr13 92604697 92604739 -27140159 + (TC)n Simple_repeat Simple_repeat 1 42 0 186 43 0 0 chr13 92604750 92604773 -27140125 + (CA)n Simple_repeat Simple_repeat 1 23 0 329 331 27 22 chr13 92604871 92605055 -27139843 + LTR41 LTR ERVL 1 185 -588 334 165 37 46 chr13 92605443 92605552 -27139346 + LTR41 LTR ERVL 623 730 -43 379 233 7 7 chr13 92606397 92606543 -27138355 + (TA)n Simple_repeat Simple_repeat 2 147 0 22 35 0 0 chr13 92606637 92606666 -27138232 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 92607192 92607224 -27137674 + AT_rich Low_complexity Low_complexity 1 32 0 633 254 66 70 chr13 92607958 92608230 -27136668 + MER58 DNA MER1_type 2 272 -2148 485 0 33 0 chr13 92608310 92608370 -27136528 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1107 200 39 13 chr13 92608372 92608602 -27136296 - MER6 DNA MER2_type -547 318 83 284 185 0 15 chr13 92608633 92608698 -27136200 - Tigger2 DNA MER2_type -883 1835 1772 215 180 80 0 chr13 92609141 92609241 -27135657 + (TA)n Simple_repeat Simple_repeat 2 109 0 202 104 21 42 chr13 92609247 92609295 -27135603 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 215 306 10 10 chr13 92609298 92609396 -27135502 + (TA)n Simple_repeat Simple_repeat 2 99 0 2779 191 56 2 chr13 92609414 92609949 -27134949 + MER6A DNA MER2_type 37 600 -5 13360 163 34 25 chr13 92609971 92612465 -27132433 - Tigger2 DNA MER2_type 0 2718 202 234 0 0 0 chr13 92612503 92612529 -27132369 + (TA)n Simple_repeat Simple_repeat 2 27 0 268 188 0 0 chr13 92612537 92612585 -27132313 - Tigger2 DNA MER2_type -2667 51 4 1005 168 186 4 chr13 92612594 92612820 -27132078 + MER7A DNA MER2_type 2 266 -80 2149 107 0 10 chr13 92612997 92613306 -27131592 + AluSg SINE Alu 5 310 0 4896 120 22 0 chr13 92613869 92614603 -27130295 + L1PA8 LINE L1 5417 6166 -6 21 71 0 0 chr13 92614603 92614645 -27130253 + AT_rich Low_complexity Low_complexity 1 42 0 595 261 29 20 chr13 92616286 92616531 -27128367 + L1MEd LINE L1 907 1153 -4966 29 0 0 0 chr13 92616722 92616751 -27128147 + AT_rich Low_complexity Low_complexity 1 29 0 311 134 15 97 chr13 92616873 92617007 -27127891 + (TTATA)n Simple_repeat Simple_repeat 5 127 0 205 219 58 15 chr13 92616941 92617078 -27127820 + (TA)n Simple_repeat Simple_repeat 1 143 0 * 232 288 29 58 chr13 92617408 92617547 -27127351 + LTR68 LTR ERV1 314 448 -292 225 65 0 0 chr13 92618035 92618066 -27126832 + (TA)n Simple_repeat Simple_repeat 2 32 0 599 317 81 71 chr13 92618336 92618679 -27126219 - ERVL LTR ERVL -1424 4269 3931 2444 69 0 0 chr13 92618679 92618985 -27125913 - AluY SINE Alu -5 306 1 599 317 81 71 chr13 92618985 92619527 -27125371 - ERVL LTR ERVL -1762 3931 3313 276 260 40 20 chr13 92619623 92619723 -27125175 - ERVL LTR ERVL -2308 3177 3076 625 295 74 100 chr13 92619730 92620340 -27124558 - ERVL LTR ERVL -2159 2837 2244 900 340 37 54 chr13 92620442 92621412 -27123486 - ERVL LTR ERVL -2920 2076 1059 12435 217 25 11 chr13 92621829 92626217 -27118681 - L1PA16 LINE L1 0 6869 2386 1875 99 0 125 chr13 92626217 92626560 -27118338 + AluSq SINE Alu 1 300 -13 12435 217 25 11 chr13 92626560 92627973 -27116925 - L1PA16 LINE L1 -4483 2386 994 48 91 0 0 chr13 92628266 92628398 -27116500 + AT_rich Low_complexity Low_complexity 1 132 0 603 58 23 0 chr13 92628405 92628492 -27116406 + L1PA15-16 LINE L1 1964 2052 -4797 1124 269 90 43 chr13 92628514 92629103 -27115795 + MLT2F LTR ERVL 1 661 -2 500 324 40 48 chr13 92629296 92629491 -27115407 - LTR16A LTR ERVL -14 436 242 1395 242 133 26 chr13 92629491 92629958 -27114940 - LTR40a LTR ERVL 0 519 3 500 324 40 48 chr13 92629958 92630034 -27114864 - LTR16A LTR ERVL -208 242 167 205 308 24 95 chr13 92630821 92630990 -27113908 - MER5B DNA MER1_type -16 162 6 46 33 0 0 chr13 92632269 92632329 -27112569 + AT_rich Low_complexity Low_complexity 1 60 0 276 416 63 0 chr13 92634431 92634669 -27110229 - L2 LINE L2 -559 2755 2503 357 330 42 38 chr13 92634970 92635206 -27109692 + HAL1 LINE L1 496 732 -1775 1048 352 91 47 chr13 92635361 92636051 -27108847 + ERVL LTR ERVL 4051 4819 -945 1525 235 34 0 chr13 92636051 92636404 -27108494 + MLT1A1 LTR MaLR 1 365 0 1048 352 91 47 chr13 92636404 92636936 -27107962 + ERVL LTR ERVL 4819 5326 -438 334 394 86 18 chr13 92637171 92637509 -27107389 + LTR16A LTR ERVL 80 440 -10 834 197 27 14 chr13 92637641 92637864 -27107034 - L1MA7 LINE L1 0 6291 6066 315 0 0 0 chr13 92638213 92638248 -27106650 + (CA)n Simple_repeat Simple_repeat 2 36 0 1493 140 4 8 chr13 92638304 92638568 -27106330 - L1PB1 LINE L1 -1 6150 5888 28 29 0 0 chr13 92639804 92639839 -27105059 + AT_rich Low_complexity Low_complexity 1 35 0 366 333 72 46 chr13 92640547 92641022 -27103876 + L1 LINE L1 4350 4836 -1310 470 220 103 113 chr13 92641281 92641415 -27103483 - MER67D LTR ERV1 -5 509 375 2221 70 3 11 chr13 92641415 92641724 -27103174 - AluSq SINE Alu 0 313 11 470 220 103 113 chr13 92641724 92641871 -27103027 - MER67D LTR ERV1 -139 375 231 1443 201 26 9 chr13 92641895 92642243 -27102655 - L1MA3 LINE L1 0 6305 5952 977 113 0 32 chr13 92642248 92642434 -27102464 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1286 192 7 54 chr13 92642438 92642839 -27102059 - AluJb SINE Alu 0 407 21 701 120 56 0 chr13 92642874 92642982 -27101916 - L1MA3 LINE L1 -362 5938 5825 3365 157 16 2 chr13 92643017 92643597 -27101301 - L1MA3 LINE L1 -369 5936 5349 979 185 39 15 chr13 92643602 92643807 -27101091 - MER67D LTR ERV1 -292 222 13 23 54 0 0 chr13 92644266 92644303 -27100595 + AT_rich Low_complexity Low_complexity 1 37 0 216 147 53 40 chr13 92644445 92644520 -27100378 + (TTATA)n Simple_repeat Simple_repeat 1 76 0 2160 146 19 26 chr13 92644755 92645180 -27099718 + L1MA4A LINE L1 5878 6299 -4 878 149 112 17 chr13 92645182 92645478 -27099420 + MER106B DNA MER1_type 562 885 -174 26 0 0 0 chr13 92645485 92645511 -27099387 + AT_rich Low_complexity Low_complexity 1 26 0 234 167 37 0 chr13 92646272 92646326 -27098572 + A-rich Low_complexity Low_complexity 2 57 0 252 86 0 0 chr13 92646441 92646476 -27098422 + (TG)n Simple_repeat Simple_repeat 2 36 0 62 52 0 0 chr13 92646500 92646597 -27098301 + AT_rich Low_complexity Low_complexity 1 97 0 26 50 0 0 chr13 92646892 92646932 -27097966 + AT_rich Low_complexity Low_complexity 1 40 0 186 300 46 85 chr13 92647031 92647052 -27097846 - MIR SINE MIR -115 147 127 2338 98 26 6 chr13 92647052 92647400 -27097498 - THE1A LTR MaLR 0 355 1 186 300 46 85 chr13 92647400 92647508 -27097390 - MIR SINE MIR -135 127 23 424 312 104 58 chr13 92649416 92649743 -27095155 + ERVL LTR ERVL 4128 4469 -1295 503 328 53 53 chr13 92650023 92650477 -27094421 + ERVL LTR ERVL 4853 5306 -458 372 209 0 0 chr13 92650508 92650599 -27094299 + GA-rich Low_complexity Low_complexity 1 91 0 1931 130 23 10 chr13 92652563 92652870 -27092028 + AluSx SINE Alu 1 311 -1 252 341 78 68 chr13 92653055 92653480 -27091418 - L2 LINE L2 -963 2351 1923 42227 36 22 3 chr13 92653481 92659556 -27085342 + L1PA2 LINE L1 1 6197 0 32 0 0 0 chr13 92660019 92660051 -27084847 + AT_rich Low_complexity Low_complexity 1 32 0 843 201 0 3 chr13 92660139 92660378 -27084520 + AluSx SINE Alu 1 302 -8 231 114 0 0 chr13 92660470 92660505 -27084393 + (TA)n Simple_repeat Simple_repeat 2 36 0 3317 207 21 40 chr13 92660665 92660794 -27084104 + L1MA8 LINE L1 5485 5615 -676 2488 66 0 0 chr13 92660794 92661098 -27083800 + AluY SINE Alu 1 304 -7 3317 207 21 40 chr13 92661098 92661428 -27083470 + L1MA8 LINE L1 5615 5950 -341 2092 175 25 2 chr13 92661428 92661822 -27083076 - MER57A LTR ERV1 0 403 1 3317 207 21 40 chr13 92661822 92662183 -27082715 + L1MA8 LINE L1 5950 6290 -1 21 0 0 0 chr13 92663437 92663458 -27081440 + AT_rich Low_complexity Low_complexity 1 21 0 3019 187 48 18 chr13 92663622 92664286 -27080612 - L1MB1 LINE L1 -1 6167 5484 205 228 10 10 chr13 92664480 92664581 -27080317 + (TA)n Simple_repeat Simple_repeat 1 101 0 625 68 48 58 chr13 92664582 92664651 -27080247 - L1MB1 LINE L1 -839 5473 5404 2077 165 31 14 chr13 92664651 92665009 -27079889 + THE1B LTR MaLR 1 364 0 625 68 48 58 chr13 92665009 92665042 -27079856 - L1MB1 LINE L1 -908 5404 5372 909 261 14 4 chr13 92665060 92665340 -27079558 + L1 LINE L1 5045 5327 -819 265 293 29 50 chr13 92665805 92665945 -27078953 - MER46C DNA MER2_type -200 138 2 827 291 9 9 chr13 92668165 92668388 -27076510 - LTR40a LTR ERVL -3 516 294 186 71 0 0 chr13 92668422 92668450 -27076448 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 25 0 0 0 chr13 92668706 92668731 -27076167 + AT_rich Low_complexity Low_complexity 1 25 0 187 304 62 18 chr13 92668760 92668872 -27076026 - L2 LINE L2 -1599 1715 1599 345 390 39 18 chr13 92669011 92669296 -27075602 - L2 LINE L2 -2498 816 526 2614 117 0 3 chr13 92669962 92670338 -27074560 + THE1C LTR MaLR 1 375 0 4726 24 0 0 chr13 92670361 92670907 -27073991 + L1PA3 LINE L1 5606 6151 -4 192 40 0 0 chr13 92670935 92670960 -27073938 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 21 36 0 0 chr13 92671101 92671129 -27073769 + AT_rich Low_complexity Low_complexity 1 28 0 190 340 19 47 chr13 92671310 92671416 -27073482 - MIR SINE MIR -108 154 52 403 320 108 13 chr13 92671451 92671682 -27073216 - MIR SINE MIR -2 260 8 1925 123 4 0 chr13 92672785 92673113 -27071785 - AluSx SINE Alu 0 334 6 444 37 0 0 chr13 92673518 92673572 -27071326 + (CA)n Simple_repeat Simple_repeat 2 55 0 483 18 0 0 chr13 92673623 92673679 -27071219 + (CA)n Simple_repeat Simple_repeat 2 57 0 333 227 34 0 chr13 92674612 92674700 -27070198 - MLT1K LTR MaLR -17 571 481 3541 146 67 49 chr13 92674874 92674950 -27069948 + L1MA8 LINE L1 5462 5535 -756 1165 234 79 6 chr13 92674950 92675266 -27069632 - MER44D DNA MER2_type 0 609 1 3541 146 67 49 chr13 92675266 92675962 -27068936 + L1MA8 LINE L1 5535 6248 -43 188 143 24 0 chr13 92676436 92676478 -27068420 + (TA)n Simple_repeat Simple_repeat 2 44 0 30 59 0 0 chr13 92677722 92677773 -27067125 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr13 92677870 92677891 -27067007 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 92678025 92678048 -27066850 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr13 92678587 92678629 -27066269 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr13 92678668 92678700 -27066198 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr13 92679329 92679351 -27065547 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 321 26 0 0 chr13 92679350 92679388 -27065510 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr13 92680593 92680614 -27064284 + AT_rich Low_complexity Low_complexity 1 21 0 391 251 46 132 chr13 92680745 92681071 -27063827 + L2 LINE L2 3011 3308 -5 290 214 100 0 chr13 92681224 92681294 -27063604 + MIR SINE MIR 56 132 -130 24 53 0 0 chr13 92681546 92681584 -27063314 + AT_rich Low_complexity Low_complexity 1 38 0 204 245 0 0 chr13 92681665 92681714 -27063184 + T-rich Low_complexity Low_complexity 1 49 0 317 303 55 36 chr13 92682658 92682932 -27061966 - L1MCc LINE L1 -4892 1531 1253 1736 100 4 36 chr13 92683034 92683283 -27061615 - AluSq SINE Alu -64 249 9 1206 226 108 73 chr13 92683283 92683792 -27061106 + MLT1E1 LTR MaLR 29 555 -99 849 218 117 5 chr13 92683792 92683998 -27060900 + MLT1A1 LTR MaLR 13 241 -124 246 278 14 0 chr13 92684007 92684079 -27060819 + MLT1E1 LTR MaLR 580 652 -2 537 221 63 6 chr13 92684721 92684904 -27059994 - MER106B DNA MER1_type -44 1015 1 2382 234 19 10 chr13 92684938 92685371 -27059527 - LTR53 LTR ERVL 0 519 79 2377 104 22 22 chr13 92685371 92685735 -27059163 - THE1B LTR MaLR 0 364 1 2382 234 19 10 chr13 92685735 92685815 -27059083 - LTR53 LTR ERVL -440 79 1 1479 239 42 48 chr13 92686347 92686828 -27058070 + MLT1D LTR MaLR 1 478 -27 834 197 27 14 chr13 92689209 92689432 -27055466 - L1MA7 LINE L1 0 6291 6066 315 0 0 0 chr13 92689782 92689817 -27055081 + (CA)n Simple_repeat Simple_repeat 2 36 0 1493 140 4 8 chr13 92689873 92690137 -27054761 - L1PB1 LINE L1 -1 6150 5888 28 29 0 0 chr13 92691373 92691408 -27053490 + AT_rich Low_complexity Low_complexity 1 35 0 366 333 72 46 chr13 92692116 92692591 -27052307 + L1 LINE L1 4350 4836 -1310 470 220 103 113 chr13 92692850 92692984 -27051914 - MER67D LTR ERV1 -5 509 375 2221 70 3 11 chr13 92692984 92693293 -27051605 - AluSq SINE Alu 0 313 11 470 220 103 113 chr13 92693293 92693440 -27051458 - MER67D LTR ERV1 -139 375 231 1459 198 26 9 chr13 92693464 92693812 -27051086 - L1MA3 LINE L1 0 6305 5952 1115 76 0 32 chr13 92693817 92694002 -27050896 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1286 192 7 54 chr13 92694006 92694448 -27050450 - AluJb SINE Alu 0 448 21 701 120 56 0 chr13 92694483 92694591 -27050307 - L1MA3 LINE L1 -362 5938 5825 3365 157 16 2 chr13 92694626 92695206 -27049692 - L1MA3 LINE L1 -369 5936 5349 979 185 39 15 chr13 92695211 92695416 -27049482 - MER67D LTR ERV1 -292 222 13 23 54 0 0 chr13 92695875 92695912 -27048986 + AT_rich Low_complexity Low_complexity 1 37 0 216 147 53 40 chr13 92696054 92696129 -27048769 + (TTATA)n Simple_repeat Simple_repeat 1 76 0 2163 146 19 26 chr13 92696364 92696789 -27048109 + L1MA4A LINE L1 5878 6299 -4 878 149 112 17 chr13 92696791 92697087 -27047811 + MER106B DNA MER1_type 562 885 -174 26 0 0 0 chr13 92697094 92697120 -27047778 + AT_rich Low_complexity Low_complexity 1 26 0 234 167 37 0 chr13 92697881 92697935 -27046963 + A-rich Low_complexity Low_complexity 2 57 0 252 86 0 0 chr13 92698050 92698085 -27046813 + (TG)n Simple_repeat Simple_repeat 2 36 0 62 52 0 0 chr13 92698109 92698206 -27046692 + AT_rich Low_complexity Low_complexity 1 97 0 26 50 0 0 chr13 92698501 92698541 -27046357 + AT_rich Low_complexity Low_complexity 1 40 0 186 300 46 85 chr13 92698640 92698661 -27046237 - MIR SINE MIR -115 147 127 2264 106 26 6 chr13 92698661 92699009 -27045889 - THE1A LTR MaLR 0 355 1 186 300 46 85 chr13 92699009 92699117 -27045781 - MIR SINE MIR -135 127 23 424 312 104 58 chr13 92701025 92701352 -27043546 + ERVL LTR ERVL 4128 4469 -1295 503 328 53 53 chr13 92701632 92702086 -27042812 + ERVL LTR ERVL 4853 5306 -458 372 209 0 0 chr13 92702117 92702208 -27042690 + GA-rich Low_complexity Low_complexity 1 91 0 1931 130 23 10 chr13 92704170 92704477 -27040421 + AluSx SINE Alu 1 311 -1 252 341 78 68 chr13 92704662 92705087 -27039811 - L2 LINE L2 -963 2351 1923 42222 36 22 3 chr13 92705088 92711117 -27033781 + L1PA3 LINE L1 1 6151 -4 192 40 0 0 chr13 92711145 92711170 -27033728 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 21 36 0 0 chr13 92711311 92711339 -27033559 + AT_rich Low_complexity Low_complexity 1 28 0 190 340 19 47 chr13 92711520 92711626 -27033272 - MIR SINE MIR -108 154 52 380 325 108 13 chr13 92711661 92711892 -27033006 - MIR SINE MIR -2 260 8 1925 123 4 0 chr13 92712995 92713333 -27031565 - AluSx SINE Alu 0 344 6 24 32 0 0 chr13 92714748 92714779 -27030119 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr13 92714850 92714890 -27030008 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 92714957 92714979 -27029919 + AT_rich Low_complexity Low_complexity 1 22 0 1429 206 0 64 chr13 92715107 92715418 -27029480 + AluJo SINE Alu 1 291 -21 303 267 23 0 chr13 92715424 92715510 -27029388 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 2607 196 96 27 chr13 92716010 92716667 -27028231 + L1MA6 LINE L1 5569 6270 -30 184 252 10 10 chr13 92716688 92716791 -27028107 + (TA)n Simple_repeat Simple_repeat 1 103 0 979 166 11 0 chr13 92717771 92717946 -27026952 - THE1C LTR MaLR 0 375 199 3384 102 70 72 chr13 92717947 92718573 -27026325 - THE1C-int LTR MaLR -955 625 1 2295 164 5 0 chr13 92718573 92718946 -27025952 - THE1C LTR MaLR 0 375 1 189 0 0 0 chr13 92718963 92718984 -27025914 + (TG)n Simple_repeat Simple_repeat 1 21 0 1675 138 8 8 chr13 92719055 92719309 -27025589 - AluSx SINE Alu -21 291 38 289 288 0 0 chr13 92719408 92719474 -27025424 - L2 LINE L2 -2 3311 3246 21 36 0 0 chr13 92719623 92719651 -27025247 + AT_rich Low_complexity Low_complexity 1 28 0 670 233 37 29 chr13 92720902 92721116 -27023782 + MER61D LTR ERV1 340 491 -10 5077 96 10 3 chr13 92721159 92721880 -27023018 + L1PA10 LINE L1 5440 6165 -3 2408 66 0 3 chr13 92722304 92722606 -27022292 + AluY SINE Alu 5 305 -6 41 48 0 0 chr13 92722793 92722855 -27022043 + AT_rich Low_complexity Low_complexity 1 62 0 210 250 17 0 chr13 92725893 92725953 -27018945 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 1991 148 3 0 chr13 92726752 92727055 -27017843 - AluSx SINE Alu -8 304 1 924 295 44 28 chr13 92728415 92728778 -27016120 + LTR40a LTR ERVL 124 492 -27 1055 168 0 21 chr13 92728848 92729038 -27015860 - AluJb SINE Alu 0 312 127 24 32 0 0 chr13 92729043 92729074 -27015824 + AT_rich Low_complexity Low_complexity 1 31 0 423 255 0 47 chr13 92729074 92729223 -27015675 - FLAM_A SINE Alu 0 142 1 275 122 0 68 chr13 92729471 92729525 -27015373 - L1MC4 LINE L1 -1350 6692 6643 1431 257 5 30 chr13 92729525 92729898 -27015000 + MLT1A1 LTR MaLR 2 365 0 275 122 0 68 chr13 92729898 92729917 -27014981 - L1MC4 LINE L1 -1399 6643 6624 1001 296 75 24 chr13 92730167 92730593 -27014305 + LTR40a LTR ERVL 46 493 -26 32 56 0 14 chr13 92730648 92730683 -27014215 + AT_rich Low_complexity Low_complexity 1 35 -35 521 224 26 9 chr13 92730683 92730799 -27014099 - FLAM_A SINE Alu -12 121 4 32 56 0 14 chr13 92730799 92730834 -27014064 + AT_rich Low_complexity Low_complexity 35 70 0 1459 161 72 58 chr13 92730842 92731202 -27013696 - L1MA4 LINE L1 -15 6285 5921 181 253 126 42 chr13 92731504 92731599 -27013299 - MIR SINE MIR -108 154 52 2453 113 3 16 chr13 92732273 92732653 -27012245 - THE1C LTR MaLR 0 375 1 195 42 0 0 chr13 92733901 92733925 -27010973 + (T)n Simple_repeat Simple_repeat 1 24 0 228 111 0 0 chr13 92734408 92734444 -27010454 + (CA)n Simple_repeat Simple_repeat 1 36 0 3475 223 93 6 chr13 92734458 92735666 -27009232 - L1MB7 LINE L1 -7 6675 5370 245 384 34 20 chr13 92735693 92735839 -27009059 + MER21B LTR ERV1 24 171 -692 264 231 39 64 chr13 92735841 92735919 -27008979 + MER21A LTR ERV1 705 780 -151 1304 256 31 31 chr13 92735928 92736472 -27008426 - L1MB7 LINE L1 -1276 5368 4825 2687 291 32 15 chr13 92736519 92737881 -27007017 - L1MB7 LINE L1 -2630 4014 2630 2271 158 14 47 chr13 92737900 92738274 -27006624 + Tigger2a DNA MER2_type 7 365 -2343 2296 99 3 3 chr13 92738274 92738577 -27006321 + AluSq SINE Alu 1 303 -10 2271 158 14 47 chr13 92738577 92738645 -27006253 + Tigger2a DNA MER2_type 365 434 0 661 224 0 15 chr13 92738724 92738858 -27006040 - FLAM_C SINE Alu 0 133 2 2760 273 85 53 chr13 92738925 92741034 -27003864 - L1MB7 LINE L1 -4171 2475 212 205 266 11 43 chr13 92742009 92742103 -27002795 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 593 356 110 9 chr13 92742836 92743306 -27001592 + L2 LINE L2 2629 3139 -174 233 338 48 21 chr13 92743672 92743817 -27001081 + L2 LINE L2 1625 1773 -1541 558 53 0 0 chr13 92744108 92744183 -27000715 - L1PA15-16 LINE L1 -4797 2052 1978 1626 118 0 0 chr13 92744194 92744448 -27000450 + AluSx SINE Alu 55 308 0 2534 45 0 7 chr13 92745392 92745700 -26999198 + AluY SINE Alu 1 306 -5 245 205 107 71 chr13 92747596 92747708 -26997190 + MLT1H LTR MaLR 411 526 -23 932 197 197 0 chr13 92747827 92748066 -26996832 + AluJo SINE Alu 12 297 -15 26 0 0 0 chr13 92748187 92748213 -26996685 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr13 92748256 92748299 -26996599 + AT_rich Low_complexity Low_complexity 1 43 0 2052 121 7 0 chr13 92748344 92748658 -26996240 - AluSx SINE Alu 0 316 1 246 62 0 0 chr13 92748785 92748828 -26996070 + (TTTA)n Simple_repeat Simple_repeat 1 75 0 246 62 0 0 chr13 92748828 92748860 -26996038 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1951 127 7 0 chr13 92748953 92749269 -26995629 + AluSp SINE Alu 1 318 0 336 247 0 25 chr13 92749290 92749371 -26995527 + MLT1E2 LTR MaLR 55 133 -521 21 36 0 0 chr13 92749392 92749420 -26995478 + AT_rich Low_complexity Low_complexity 1 28 0 3142 71 7 0 chr13 92749427 92749849 -26995049 - L1PA7 LINE L1 -11 6143 5719 1343 275 32 20 chr13 92749891 92750298 -26994600 + MLT1E2 LTR MaLR 215 626 0 2121 158 65 30 chr13 92750726 92751156 -26993742 - MER65A LTR ERV1 0 445 1 1904 102 22 62 chr13 92752034 92752224 -26992674 - AluY SINE Alu 0 311 138 180 0 0 0 chr13 92752224 92752244 -26992654 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1904 102 22 62 chr13 92752244 92752376 -26992522 - AluY SINE Alu -173 138 2 405 0 0 0 chr13 92752437 92752482 -26992416 + (CA)n Simple_repeat Simple_repeat 2 46 0 344 140 0 0 chr13 92752546 92752596 -26992302 - MSTA LTR MaLR 0 428 379 3003 230 19 42 chr13 92752603 92752927 -26991971 + L1MB8 LINE L1 5111 5441 -737 2292 74 0 6 chr13 92752927 92753238 -26991660 + AluY SINE Alu 1 309 -2 3003 230 19 42 chr13 92753238 92753464 -26991434 + L1MB8 LINE L1 5441 5671 -507 1529 156 111 13 chr13 92753464 92753771 -26991127 + MER1B DNA MER1_type 1 337 0 3003 230 19 42 chr13 92753771 92754228 -26990670 + L1MB8 LINE L1 5671 6097 -81 316 134 0 30 chr13 92754365 92754432 -26990466 + L1MB8 LINE L1 6110 6174 -4 245 329 13 13 chr13 92755008 92755087 -26989811 + MIR SINE MIR 86 164 -98 306 216 45 11 chr13 92755301 92755389 -26989509 - L1M4 LINE L1 -960 5186 5096 222 295 166 26 chr13 92755609 92755802 -26989096 + MIR SINE MIR 3 222 -40 1946 126 17 10 chr13 92756568 92756731 -26988167 - AluSx SINE Alu -9 303 136 2212 108 3 0 chr13 92756731 92757037 -26987861 - AluSx SINE Alu -3 309 3 1946 126 17 10 chr13 92757037 92757174 -26987724 - AluSx SINE Alu -176 136 1 308 209 11 0 chr13 92759723 92759814 -26985084 + (TA)n Simple_repeat Simple_repeat 1 92 0 231 122 61 0 chr13 92759816 92759865 -26985033 - L1MC4 LINE L1 -1336 6706 6655 2043 125 0 35 chr13 92762238 92762549 -26982349 + AluSg SINE Alu 1 300 -10 491 273 19 19 chr13 92762868 92763029 -26981869 - LTR41 LTR ERVL -604 169 9 231 88 0 0 chr13 92763632 92763666 -26981232 + (GA)n Simple_repeat Simple_repeat 1 34 0 405 240 55 0 chr13 92764003 92764150 -26980748 + MLT2D LTR ERVL 1 158 -239 556 257 103 31 chr13 92764155 92764416 -26980482 - L1MC4a LINE L1 -1661 6147 5868 687 87 9 17 chr13 92764458 92764573 -26980325 + (TCCCC)n Simple_repeat Simple_repeat 5 118 0 323 210 67 8 chr13 92764761 92764880 -26980018 - L1MC4a LINE L1 -2428 5380 5255 213 367 101 9 chr13 92765079 92765188 -26979710 - MIR SINE MIR -119 143 25 489 236 2 0 chr13 92766729 92766849 -26978049 - L1MA8 LINE L1 -290 5861 5743 21 0 0 0 chr13 92766963 92766984 -26977914 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 92767199 92767221 -26977677 + AT_rich Low_complexity Low_complexity 1 22 0 277 270 230 14 chr13 92768795 92769017 -26975881 - L1ME LINE L1 -368 5802 5533 268 203 73 41 chr13 92769102 92769225 -26975673 - L1ME LINE L1 -881 5410 5284 5450 25 0 0 chr13 92769658 92770296 -26974602 - L1PA3 LINE L1 0 6155 5518 254 175 87 48 chr13 92770376 92770479 -26974419 - L1ME LINE L1 -1288 4858 4752 26 50 0 0 chr13 92771712 92771752 -26973146 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr13 92771952 92771982 -26972916 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr13 92772076 92772112 -26972786 + AT_rich Low_complexity Low_complexity 1 36 0 613 275 38 5 chr13 92772283 92772574 -26972324 + L1MDa LINE L1 1889 2201 -4339 259 105 13 92 chr13 92772813 92772889 -26972009 + (TTA)n Simple_repeat Simple_repeat 2 71 0 2531 110 11 8 chr13 92773013 92773385 -26971513 - THE1C LTR MaLR -2 373 1 8378 157 52 12 chr13 92773385 92774905 -26969993 - THE1C-int LTR MaLR 0 1580 1 2497 125 3 8 chr13 92774905 92775282 -26969616 - THE1C LTR MaLR 0 375 1 366 217 0 0 chr13 92775700 92775769 -26969129 + MER52A LTR ERV1 1 69 -1686 * 4269 175 303 25 chr13 92775762 92776814 -26968084 + MER52A LTR ERV1 411 1755 0 198 323 15 0 chr13 92776835 92776900 -26967998 - L2 LINE L2 0 3313 3248 509 246 0 25 chr13 92777045 92777167 -26967731 - FAM SINE Alu -15 170 52 22 0 0 0 chr13 92777267 92777289 -26967609 + AT_rich Low_complexity Low_complexity 1 22 0 341 325 80 6 chr13 92777297 92777460 -26967438 + L1ME3 LINE L1 5944 6118 -44 425 397 8 4 chr13 92777528 92777780 -26967118 - L2 LINE L2 -337 2977 2725 365 340 108 41 chr13 92778042 92778654 -26966244 + L1MEc LINE L1 136 788 -5608 272 294 71 28 chr13 92778673 92778955 -26965943 + L1MEc LINE L1 834 1127 -5269 309 290 28 0 chr13 92779219 92779326 -26965572 - L1MEc LINE L1 -2540 3675 3566 2135 155 37 26 chr13 92779345 92779810 -26965088 - L1M2 LINE L1 -1378 4768 4299 * 2668 184 19 14 chr13 92779806 92780468 -26964430 + L1M2 LINE L1 4768 5436 -743 4932 194 31 4 chr13 92780486 92782212 -26962686 + L1MA5 LINE L1 4518 6289 -11 1351 285 85 55 chr13 92782233 92782606 -26962292 - L1MEc LINE L1 -2663 3552 3192 1771 150 32 4 chr13 92782606 92782886 -26962012 - AluJb SINE Alu -24 288 1 1351 285 85 55 chr13 92782886 92784193 -26960705 - L1MEc LINE L1 -3023 3192 1852 2060 116 0 0 chr13 92784193 92784492 -26960406 - AluY SINE Alu 0 305 7 1351 285 85 55 chr13 92784492 92784723 -26960175 - L1MEc LINE L1 -4363 1852 1629 16404 91 16 28 chr13 92784927 92788126 -26956772 + L1PA7 LINE L1 2968 6153 -1 21 0 0 0 chr13 92788242 92788263 -26956635 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr13 92788429 92788469 -26956429 + AT_rich Low_complexity Low_complexity 1 40 0 29 101 0 0 chr13 92788729 92788828 -26956070 + AT_rich Low_complexity Low_complexity 1 99 0 482 321 83 38 chr13 92788828 92789224 -26955674 - L2 LINE L2 -1089 2225 1812 23 54 0 0 chr13 92789396 92789433 -26955465 + AT_rich Low_complexity Low_complexity 1 37 0 524 257 83 12 chr13 92789811 92790138 -26954760 + L1M4 LINE L1 2271 2620 -3526 222 37 0 0 chr13 92790905 92790932 -26953966 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1493 188 3 38 chr13 92790935 92791227 -26953671 - AluJo SINE Alu -29 283 2 436 176 39 0 chr13 92791957 92792059 -26952839 - L1MB1 LINE L1 -1 6167 6062 509 294 0 37 chr13 92792744 92792931 -26951967 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 1717 176 3 10 chr13 92792978 92793279 -26951619 - AluJb SINE Alu -5 307 9 217 167 0 19 chr13 92793911 92793965 -26950933 + (TA)n Simple_repeat Simple_repeat 1 53 0 372 297 38 87 chr13 92795651 92795917 -26948981 + MIR SINE MIR 10 262 0 917 244 24 74 chr13 92796142 92796560 -26948338 + MLT2C1 LTR ERVL 1 397 0 216 0 0 0 chr13 92796729 92796753 -26948145 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 216 171 0 0 chr13 92796842 92796877 -26948021 + CT-rich Low_complexity Low_complexity 2 36 0 246 98 24 0 chr13 92797367 92797408 -26947490 + MSTC LTR MaLR 351 392 -36 2292 88 0 3 chr13 92797429 92797725 -26947173 - AluSc SINE Alu 0 309 15 749 271 55 13 chr13 92797798 92798034 -26946864 + L1MC4 LINE L1 6616 6861 -1181 594 141 0 20 chr13 92798761 92798860 -26946038 + MER4A LTR ERV1 1 97 -567 1580 148 3 78 chr13 92798870 92799235 -26945663 + MER4A LTR ERV1 269 664 0 21 57 0 0 chr13 92800346 92800381 -26944517 + AT_rich Low_complexity Low_complexity 1 35 0 366 207 11 0 chr13 92801164 92801251 -26943647 + L1MB4 LINE L1 6091 6178 -2 195 42 0 0 chr13 92801960 92801984 -26942914 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr13 92802902 92802930 -26941968 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 92803420 92803443 -26941455 + AT_rich Low_complexity Low_complexity 1 23 0 30 77 0 0 chr13 92803700 92803765 -26941133 + AT_rich Low_complexity Low_complexity 1 65 0 2243 109 0 0 chr13 92805801 92806113 -26938785 + AluSx SINE Alu 1 312 0 1387 129 23 138 chr13 92806145 92806493 -26938405 + AluYb8 SINE Alu 1 308 0 234 105 0 0 chr13 92806494 92806532 -26938366 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr13 92808653 92808681 -26936217 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr13 92808739 92808785 -26936113 + AT_rich Low_complexity Low_complexity 1 46 0 529 252 0 0 chr13 92809007 92809122 -26935776 + FLAM_A SINE Alu 9 123 -19 26 64 0 0 chr13 92809266 92809313 -26935585 + AT_rich Low_complexity Low_complexity 1 47 0 2238 84 0 0 chr13 92809692 92809999 -26934899 - AluY SINE Alu 0 307 1 449 278 56 35 chr13 92811397 92811595 -26933303 + L1MD2 LINE L1 19 220 -6320 1397 193 85 138 chr13 92812024 92812778 -26932120 - LTR8A LTR ERV1 0 691 1 4511 240 61 64 chr13 92813151 92816910 -26927988 + L1MD2 LINE L1 2991 6735 -18 30 83 0 0 chr13 92817279 92817351 -26927547 + AT_rich Low_complexity Low_complexity 1 72 0 1690 159 25 0 chr13 92818464 92818767 -26926131 + AluSx SINE Alu 1 310 0 8208 207 20 2 chr13 92819045 92821088 -26923810 - L1PA16 LINE L1 -615 5551 3477 3041 163 37 11 chr13 92821095 92821661 -26923237 + L1PA16 LINE L1 5576 6156 -10 23 54 0 0 chr13 92822307 92822344 -26922554 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr13 92822542 92822581 -26922317 + AT_rich Low_complexity Low_complexity 1 39 0 276 292 0 0 chr13 92823541 92823606 -26921292 + Tigger7 DNA MER2_type 101 165 -2322 1546 183 20 7 chr13 92823637 92823932 -26920966 + Tigger7 DNA MER2_type 2289 2587 0 24 0 0 0 chr13 92824714 92824738 -26920160 + AT_rich Low_complexity Low_complexity 1 24 0 203 313 0 0 chr13 92824904 92824984 -26919914 + (TA)n Simple_repeat Simple_repeat 1 80 0 2026 156 6 33 chr13 92825428 92825793 -26919105 + THE1A LTR MaLR 1 355 0 273 265 0 15 chr13 92825947 92826015 -26918883 + CT-rich Low_complexity Low_complexity 2 68 0 194 306 145 47 chr13 92828272 92828507 -26916391 - L2 LINE L2 -556 2758 2501 1866 125 64 10 chr13 92828667 92828963 -26915935 - AluSx SINE Alu 0 312 1 205 276 0 26 chr13 92829341 92829417 -26915481 + CT-rich Low_complexity Low_complexity 2 75 0 5948 160 67 9 chr13 92830181 92831341 -26913557 - Tigger3b DNA MER2_type -3 1228 1 29 47 0 0 chr13 92831431 92831474 -26913424 + AT_rich Low_complexity Low_complexity 1 43 0 2609 175 64 44 chr13 92831755 92832299 -26912599 - MER21A LTR ERV1 -1 930 376 1143 172 41 56 chr13 92832304 92832572 -26912326 - MER21A LTR ERV1 -667 264 1 307 325 53 0 chr13 92832594 92832708 -26912190 - MIR SINE MIR -78 184 65 8153 67 5 10 chr13 92832898 92833961 -26910937 + MER11C LTR ERVK 1 1057 -14 224 176 67 25 chr13 92834208 92834327 -26910571 + (TA)n Simple_repeat Simple_repeat 2 125 0 21 0 0 0 chr13 92834457 92834478 -26910420 + AT_rich Low_complexity Low_complexity 1 21 0 1967 113 143 6 chr13 92834508 92834844 -26910054 + MSTA LTR MaLR 45 426 -2 180 0 0 0 chr13 92836083 92836103 -26908795 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2200 88 0 23 chr13 92837108 92837413 -26907485 - AluSq SINE Alu -15 298 1 2236 121 0 0 chr13 92838050 92838357 -26906541 - AluSc SINE Alu -1 308 2 272 175 0 0 chr13 92838395 92838449 -26906449 - MLT2B1 LTR ERVL 0 520 391 205 182 0 0 chr13 92838450 92838483 -26906415 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 1715 216 18 55 chr13 92838485 92838867 -26906031 - MLT2D LTR ERVL -42 478 10 278 65 0 22 chr13 92841065 92841111 -26903787 + (CA)n Simple_repeat Simple_repeat 1 45 0 261 274 107 12 chr13 92841185 92841269 -26903629 + L2 LINE L2 2639 2730 -584 356 255 53 11 chr13 92841330 92841424 -26903474 + MER5A DNA MER1_type 92 189 0 264 320 102 48 chr13 92841499 92841852 -26903046 + L2 LINE L2 2841 3212 -101 21 36 0 0 chr13 92841991 92842019 -26902879 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 92842482 92842503 -26902395 + AT_rich Low_complexity Low_complexity 1 21 0 264 339 127 17 chr13 92842680 92842798 -26902100 + MIR3 SINE MIR 10 140 -68 21 0 0 0 chr13 92843735 92843756 -26901142 + AT_rich Low_complexity Low_complexity 1 21 0 387 135 0 125 chr13 92845214 92845253 -26899645 + MIR SINE MIR 126 168 -94 1951 138 7 7 chr13 92845253 92845551 -26899347 + AluSx SINE Alu 1 298 -14 387 135 0 125 chr13 92845551 92845615 -26899283 + MIR SINE MIR 168 216 -46 2234 139 17 6 chr13 92845628 92845988 -26898910 + THE1B LTR MaLR 1 364 0 481 284 68 62 chr13 92846369 92846831 -26898067 - MLT1F1 LTR MaLR -8 646 17 272 308 168 0 chr13 92847479 92847622 -26897276 - MER46C DNA MER2_type -15 323 157 231 294 47 12 chr13 92847701 92847786 -26897112 - MER46C DNA MER2_type -243 95 8 245 250 29 29 chr13 92847966 92848034 -26896864 + MIR SINE MIR 47 114 -148 2361 112 24 29 chr13 92848302 92848676 -26896222 + THE1C LTR MaLR 4 375 0 271 205 97 0 chr13 92849090 92849175 -26895723 + L1MC/D LINE L1 5683 5777 -393 26 30 0 0 chr13 92849187 92849220 -26895678 + AT_rich Low_complexity Low_complexity 1 33 0 8742 158 34 30 chr13 92850664 92852401 -26892497 - L1MA1 LINE L1 -316 5986 4257 2453 81 0 0 chr13 92852401 92852711 -26892187 - AluY SINE Alu -1 310 1 8742 158 34 30 chr13 92852711 92853106 -26891792 - L1MA1 LINE L1 -2045 4257 3838 2177 114 0 0 chr13 92853106 92853414 -26891484 + AluY SINE Alu 1 308 -3 8742 158 34 30 chr13 92853414 92853744 -26891154 - L1MA1 LINE L1 -2464 3838 3511 359 256 111 27 chr13 92853779 92854185 -26890713 - L1MDa LINE L1 -2945 3595 3156 955 171 30 5 chr13 92854196 92854395 -26890503 - L1MC1 LINE L1 -7 6326 6123 1757 228 138 0 chr13 92854395 92854830 -26890068 - L1MC1 LINE L1 -560 5784 5290 1387 196 25 56 chr13 92854829 92855187 -26889711 - L1MA9 LINE L1 0 6312 5966 * 3230 41 0 0 chr13 92855384 92855777 -26889121 - L1P LINE L1 -1231 4915 4523 3061 28 0 0 chr13 92855777 92856136 -26888762 + L1PA2 LINE L1 5792 6155 0 708 285 93 48 chr13 92856170 92857350 -26887548 - L1MDa LINE L1 -3623 2917 1624 300 53 0 0 chr13 92857350 92857388 -26887510 + (TG)n Simple_repeat Simple_repeat 1 38 0 708 285 93 48 chr13 92857388 92857771 -26887127 - L1MDa LINE L1 -4916 1624 1260 373 207 52 23 chr13 92858717 92858891 -26886007 + (TA)n Simple_repeat Simple_repeat 2 180 0 25 0 0 0 chr13 92859088 92859113 -26885785 + AT_rich Low_complexity Low_complexity 1 25 0 36 40 0 0 chr13 92860534 92860584 -26884314 + AT_rich Low_complexity Low_complexity 1 50 0 263 366 59 4 chr13 92860959 92861213 -26883685 - LTR33 LTR ERVL -19 502 235 29 28 0 0 chr13 92861491 92861527 -26883371 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr13 92861589 92861631 -26883267 + AT_rich Low_complexity Low_complexity 1 42 0 944 292 68 38 chr13 92861685 92862243 -26882655 + MER90 LTR ERV1 1 575 0 199 359 33 9 chr13 92862941 92863050 -26881848 + MIR SINE MIR 47 163 -45 22 0 0 0 chr13 92863304 92863326 -26881572 + AT_rich Low_complexity Low_complexity 1 22 0 347 302 114 0 chr13 92863930 92864079 -26880819 - MIR SINE MIR -15 247 82 301 313 90 14 chr13 92864255 92864399 -26880499 - L1MC4 LINE L1 -1339 6703 6549 22 0 0 0 chr13 92864592 92864614 -26880284 + AT_rich Low_complexity Low_complexity 1 22 0 217 205 0 0 chr13 92864901 92864940 -26879958 - MIR SINE MIR -74 188 150 1021 260 53 3 chr13 92866704 92867004 -26877894 - MER58B DNA MER1_type 0 341 27 903 285 4 13 chr13 92867015 92867250 -26877648 - MLT1D LTR MaLR -3 502 270 1479 106 8 29 chr13 92867447 92867692 -26877206 + L1MA3 LINE L1 6058 6297 -8 23 0 0 0 chr13 92867692 92867715 -26877183 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr13 92867768 92867810 -26877088 + AT_rich Low_complexity Low_complexity 1 42 0 1956 251 80 19 chr13 92868285 92868933 -26875965 - MER76 LTR ERV 0 688 1 878 277 55 11 chr13 92869778 92870049 -26874849 + LTR53 LTR ERVL 224 506 -13 306 0 0 0 chr13 92870390 92870424 -26874474 + (CA)n Simple_repeat Simple_repeat 2 35 0 368 310 99 71 chr13 92870946 92871311 -26873587 + L2 LINE L2 2913 3287 -26 335 295 47 7 chr13 92872057 92872206 -26872692 - MER103 DNA DNA -10 156 2 1375 219 86 50 chr13 92872644 92873088 -26871810 + MLT1C LTR MaLR 8 467 0 2261 53 3 3 chr13 92873302 92873607 -26871291 - AluY SINE Alu 0 305 1 814 266 72 19 chr13 92873640 92873950 -26870948 - L1ME1 LINE L1 -64 6102 5771 26 64 0 0 chr13 92876174 92876221 -26868677 + AT_rich Low_complexity Low_complexity 1 47 0 1311 247 57 3 chr13 92876501 92876870 -26868028 + MLT1B LTR MaLR 1 389 -1 13656 166 37 26 chr13 92876949 92877158 -26867740 - L1MA2 LINE L1 0 7723 7518 3961 173 113 84 chr13 92877158 92878399 -26866499 - MER52C LTR ERV1 0 1278 2 13656 166 37 26 chr13 92878399 92883852 -26861046 - L1MA2 LINE L1 -205 7518 1979 3725 75 0 16 chr13 92883852 92884361 -26860537 + L1PA4 LINE L1 5652 6152 -3 13656 166 37 26 chr13 92884361 92884683 -26860215 - L1MA2 LINE L1 -5744 1979 1662 2995 199 30 19 chr13 92884675 92885299 -26859599 - L1MA2 LINE L1 -6932 633 3 * 400 298 66 0 chr13 92885379 92885500 -26859398 - MIR SINE MIR -49 213 85 24 32 0 0 chr13 92885805 92885836 -26859062 + AT_rich Low_complexity Low_complexity 1 31 0 1170 257 47 25 chr13 92885886 92886727 -26858171 - L1ME1 LINE L1 -578 5588 4736 641 240 67 0 chr13 92886752 92886902 -26857996 + L1ME1 LINE L1 5594 5753 -413 893 200 103 103 chr13 92886902 92887292 -26857606 + MSTD LTR MaLR 5 394 -2 6068 249 72 29 chr13 92887294 92888950 -26855948 + MSTD-int LTR MaLR 1 1728 -7 731 236 101 75 chr13 92888956 92889342 -26855556 + MSTD LTR MaLR 1 396 0 1885 224 59 35 chr13 92889386 92889927 -26854971 + MLT2B3 LTR ERVL 1 554 0 2063 231 55 25 chr13 92890041 92890568 -26854330 + MLT2B3 LTR ERVL 12 554 0 767 275 25 84 chr13 92890574 92890967 -26853931 + L1ME1 LINE L1 5790 6159 -7 24 53 0 0 chr13 92891589 92891627 -26853271 + AT_rich Low_complexity Low_complexity 1 38 0 241 290 0 16 chr13 92892454 92892516 -26852382 + CT-rich Low_complexity Low_complexity 4 64 0 375 78 0 0 chr13 92892516 92892567 -26852331 + (CAT)n Simple_repeat Simple_repeat 3 53 0 1213 198 46 34 chr13 92892836 92893164 -26851734 + L1MA8 LINE L1 5960 6291 0 229 250 31 0 chr13 92893251 92893315 -26851583 + (CATA)n Simple_repeat Simple_repeat 3 68 0 257 254 32 0 chr13 92893772 92893835 -26851063 + MLT1I LTR MaLR 73 137 -272 2234 233 49 6 chr13 92894177 92895182 -26849716 - L1MB3 LINE L1 -4 6179 5099 954 329 93 61 chr13 92896364 92896782 -26848116 - L2 LINE L2 -6 3307 2904 189 0 0 0 chr13 92896782 92896803 -26848095 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 954 329 93 61 chr13 92896803 92897601 -26847297 - L2 LINE L2 -409 2904 2050 1059 260 170 27 chr13 92897604 92898046 -26846852 - MLT1D LTR MaLR 0 505 1 351 280 16 32 chr13 92898076 92898201 -26846697 - L2 LINE L2 -1509 1805 1683 619 348 67 13 chr13 92898329 92898645 -26846253 - LTR16C LTR ERVL -88 403 71 23 0 0 0 chr13 92899620 92899643 -26845255 + AT_rich Low_complexity Low_complexity 1 23 0 369 306 118 7 chr13 92899741 92899885 -26845013 + L2 LINE L2 247 406 -2908 1381 224 77 21 chr13 92899889 92900318 -26844580 - MLT1C LTR MaLR -7 460 8 1221 332 86 61 chr13 92900383 92901413 -26843485 + L2 LINE L2 418 1473 -1841 21 82 0 0 chr13 92901975 92902024 -26842874 + AT_rich Low_complexity Low_complexity 1 49 0 2514 117 8 0 chr13 92903167 92903526 -26841372 + THE1B LTR MaLR 3 364 0 416 312 82 45 chr13 92903588 92903918 -26840980 + L1MC4a LINE L1 4487 4828 -1318 293 282 152 74 chr13 92904143 92904576 -26840322 - MLT1H LTR MaLR -13 536 70 27 49 0 0 chr13 92904658 92904699 -26840199 + AT_rich Low_complexity Low_complexity 1 41 0 1985 121 13 7 chr13 92904876 92905366 -26839532 + AluSx SINE Alu 5 496 0 807 298 87 23 chr13 92905387 92905871 -26839027 + L1MC4a LINE L1 5340 5854 -1954 475 227 79 54 chr13 92905930 92906208 -26838690 + L1MC5 LINE L1 7601 7885 -76 221 175 0 0 chr13 92907342 92907382 -26837516 + (TA)n Simple_repeat Simple_repeat 1 40 0 236 258 0 30 chr13 92907580 92907646 -26837252 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 3000 129 11 2 chr13 92907660 92908125 -26836773 + L1PA13 LINE L1 5686 6154 -9 361 319 115 60 chr13 92908474 92909094 -26835804 + L1MC/D LINE L1 4256 4926 -1220 22 0 0 0 chr13 92909128 92909150 -26835748 + AT_rich Low_complexity Low_complexity 1 22 0 2043 126 0 7 chr13 92909192 92909501 -26835397 + AluSx SINE Alu 1 307 -5 1046 290 46 24 chr13 92909641 92910089 -26834809 + L1MC/D LINE L1 5268 5725 -781 1913 126 3 0 chr13 92910176 92910461 -26834437 + AluSx SINE Alu 25 310 -2 2345 99 3 0 chr13 92911204 92911516 -26833382 + AluSp SINE Alu 1 313 0 234 80 60 0 chr13 92911516 92911566 -26833332 + GA-rich Low_complexity Low_complexity 2 54 0 437 284 123 57 chr13 92911765 92912236 -26832662 - L1M4 LINE L1 -2868 3278 2777 24 32 0 0 chr13 92912236 92912267 -26832631 + AT_rich Low_complexity Low_complexity 1 31 0 207 114 0 0 chr13 92914629 92914664 -26830234 + (A)n Simple_repeat Simple_repeat 1 35 0 686 346 26 39 chr13 92914674 92915142 -26829756 - HERVL LTR ERVL -1322 4332 3871 235 250 38 12 chr13 92915142 92915222 -26829676 - MER67D LTR ERV1 0 514 433 1432 229 27 21 chr13 92915293 92915733 -26829165 - MER67C LTR ERV1 -308 402 1 591 145 31 42 chr13 92915758 92915922 -26828976 + MER51A LTR ERV1 1 162 -215 * 2094 113 3 6 chr13 92915919 92916230 -26828668 + MER51B LTR ERV1 68 377 0 302 350 37 9 chr13 92916821 92917038 -26827860 - HERVL LTR ERVL -2805 2959 2737 204 40 0 0 chr13 92917349 92917374 -26827524 + (A)n Simple_repeat Simple_repeat 1 25 0 1677 251 52 14 chr13 92917591 92918092 -26826806 - MLT2B1 LTR ERVL 0 520 1 7856 189 56 30 chr13 92918092 92918734 -26826164 - ERVL-B1 LTR ERVL -7 5757 5133 1964 109 26 20 chr13 92918734 92919037 -26825861 + AluY SINE Alu 2 306 -5 7856 189 56 30 chr13 92919037 92920077 -26824821 - ERVL-B1 LTR ERVL -631 5133 4031 22 35 0 0 chr13 92920100 92920129 -26824769 + AT_rich Low_complexity Low_complexity 1 29 0 239 109 0 0 chr13 92920729 92920775 -26824123 + LTR66 LTR ERVL 394 439 -171 2516 150 21 7 chr13 92920865 92921286 -26823612 - MSTA LTR MaLR -1 427 1 232 165 11 44 chr13 92921286 92921377 -26823521 + (TA)n Simple_repeat Simple_repeat 1 88 0 260 266 11 53 chr13 92921405 92921499 -26823399 + L1MC4 LINE L1 6614 6703 -1339 890 208 6 6 chr13 92921704 92921872 -26823026 + FRAM SINE Alu 2 169 -7 395 256 167 21 chr13 92921974 92922399 -26822499 + L1ME3A LINE L1 5672 6170 0 22 0 0 0 chr13 92922723 92922745 -26822153 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 92923044 92923069 -26821829 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr13 92923108 92923140 -26821758 + AT_rich Low_complexity Low_complexity 1 32 0 247 324 9 46 chr13 92923502 92923610 -26821288 - MIR3 SINE MIR -13 195 92 425 172 20 0 chr13 92924979 92925078 -26819820 + L1PA15 LINE L1 6065 6165 0 3699 173 55 45 chr13 92925147 92925348 -26819550 + L1MC1 LINE L1 5421 5618 -715 2144 111 0 0 chr13 92925348 92925654 -26819244 + AluY SINE Alu 1 306 -5 3699 173 55 45 chr13 92925654 92926281 -26818617 + L1MC1 LINE L1 5618 6258 -75 26 74 0 0 chr13 92926347 92926401 -26818497 + AT_rich Low_complexity Low_complexity 1 54 0 396 296 107 57 chr13 92926401 92926563 -26818335 + L1M4 LINE L1 1217 1369 -5173 2231 95 0 19 chr13 92926563 92926880 -26818018 + AluY SINE Alu 1 311 0 396 296 107 57 chr13 92926880 92927287 -26817611 + L1M4 LINE L1 1369 1816 -4726 2074 239 35 42 chr13 92927765 92927867 -26817031 - MLT1E3 LTR MaLR -2 622 521 2415 73 3 0 chr13 92927867 92928169 -26816729 + AluSx SINE Alu 1 303 -9 2074 239 35 42 chr13 92928169 92928659 -26816239 - MLT1E3 LTR MaLR -103 521 34 350 289 140 25 chr13 92928757 92929270 -26815628 + L1M4 LINE L1 4498 5069 -1471 381 316 122 35 chr13 92929361 92929731 -26815167 + L1M4 LINE L1 5183 5584 -956 509 313 53 25 chr13 92929801 92930085 -26814813 - L1ME LINE L1 -347 5823 5532 633 254 0 0 chr13 92930111 92930237 -26814661 + MER82 DNA MER2_type 520 645 -8 215 79 26 0 chr13 92932831 92932869 -26812029 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 80 0 0 chr13 92933942 92933992 -26810906 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr13 92934955 92934979 -26809919 + AT_rich Low_complexity Low_complexity 1 24 0 1483 213 32 0 chr13 92935323 92935605 -26809293 + AluJb SINE Alu 1 291 -21 22 70 0 0 chr13 92935995 92936038 -26808860 + AT_rich Low_complexity Low_complexity 1 43 0 22 80 0 0 chr13 92936226 92936276 -26808622 + AT_rich Low_complexity Low_complexity 1 50 0 245 242 8 0 chr13 92936573 92936701 -26808197 + (TA)n Simple_repeat Simple_repeat 2 130 0 323 313 142 9 chr13 92936789 92937022 -26807876 + L1M4c LINE L1 2284 2547 -3993 811 204 35 6 chr13 92937025 92937213 -26807685 - MER61D LTR ERV1 0 749 254 744 269 87 0 chr13 92937620 92937932 -26806966 + L1M4c LINE L1 2554 2892 -3648 684 274 107 13 chr13 92938004 92938482 -26806416 + L1M4c LINE L1 3317 3839 -2701 1750 163 21 75 chr13 92938493 92938591 -26806307 - MER47A DNA MER2_type -1957 366 264 1973 173 19 19 chr13 92938591 92938966 -26805932 - THE1C LTR MaLR 0 375 1 1750 163 21 75 chr13 92938966 92939254 -26805644 - MER47A DNA MER2_type -2059 264 1 1784 288 64 48 chr13 92939317 92940000 -26804898 + L1M4c LINE L1 3867 4576 -1964 314 23 0 23 chr13 92940000 92940044 -26804854 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1784 288 64 48 chr13 92940044 92940468 -26804430 + L1M4c LINE L1 4576 4992 -1548 1942 113 13 48 chr13 92940492 92940802 -26804096 + AluSx SINE Alu 1 299 -13 1944 189 112 62 chr13 92940887 92941586 -26803312 + MER50 LTR ERV1 1 734 0 25 31 0 0 chr13 92941591 92941623 -26803275 + AT_rich Low_complexity Low_complexity 1 32 0 2432 147 61 67 chr13 92941731 92942335 -26802563 + MER4B LTR ERV1 1 769 -10 390 250 0 138 chr13 92945041 92945229 -26799669 + MIR SINE MIR 30 191 -71 321 313 104 22 chr13 92945468 92945698 -26799200 - Charlie8 DNA MER1_type -2166 251 3 740 277 6 0 chr13 92946103 92946280 -26798618 - MER45A DNA AcHobo 0 178 1 279 275 12 0 chr13 92946885 92946965 -26797933 - L1ME LINE L1 -358 5804 5724 1778 111 4 4 chr13 92949536 92949780 -26795118 + AluSc SINE Alu 51 294 -15 27 49 0 0 chr13 92950502 92950543 -26794355 + AT_rich Low_complexity Low_complexity 1 41 0 2382 73 0 0 chr13 92954172 92954473 -26790425 + AluSc SINE Alu 1 301 -8 190 115 39 0 chr13 92954567 92954619 -26790279 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr13 92954627 92954655 -26790243 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 92954889 92954911 -26789987 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 92954983 92955005 -26789893 + AT_rich Low_complexity Low_complexity 1 22 0 199 285 51 88 chr13 92955538 92955675 -26789223 + MIR SINE MIR 23 154 -108 32 57 0 0 chr13 92956217 92956270 -26788628 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr13 92956488 92956510 -26788388 + AT_rich Low_complexity Low_complexity 1 22 0 31 58 0 0 chr13 92956720 92956772 -26788126 + AT_rich Low_complexity Low_complexity 1 52 0 1685 180 20 0 chr13 92956897 92957203 -26787695 - AluJb SINE Alu 0 312 1 2142 189 49 5 chr13 92957570 92957978 -26786920 + MSTB LTR MaLR 1 426 0 1985 178 5 22 chr13 92958476 92958846 -26786052 - THE1B LTR MaLR 0 364 1 1442 273 152 40 chr13 92958975 92960011 -26784887 - L1MC4 LINE L1 -21 8021 6870 24 77 0 0 chr13 92961483 92961535 -26783363 + AT_rich Low_complexity Low_complexity 1 52 0 267 300 0 11 chr13 92961814 92961904 -26782994 + GA-rich Low_complexity Low_complexity 1 89 0 721 282 50 64 chr13 92962790 92963732 -26781166 + L1ME LINE L1 270 1207 -4873 24 32 0 0 chr13 92964382 92964413 -26780485 + AT_rich Low_complexity Low_complexity 1 31 0 26 74 0 0 chr13 92964641 92964695 -26780203 + AT_rich Low_complexity Low_complexity 1 54 0 2344 81 0 0 chr13 92964793 92965100 -26779798 - AluY SINE Alu -4 307 1 224 225 42 0 chr13 92965620 92965691 -26779207 + (TA)n Simple_repeat Simple_repeat 1 74 0 22 0 0 0 chr13 92967287 92967309 -26777589 + AT_rich Low_complexity Low_complexity 1 22 0 34 42 0 0 chr13 92968715 92968763 -26776135 + AT_rich Low_complexity Low_complexity 1 48 0 954 203 49 136 chr13 92968979 92969384 -26775514 - MLT1A2 LTR MaLR 0 374 5 685 262 124 28 chr13 92969444 92969930 -26774968 + LTR28 LTR ERV1 1 622 -141 381 337 25 6 chr13 92970829 92970992 -26773906 + LTR16A1 LTR ERVL 290 455 -2 1814 198 75 10 chr13 92971060 92971460 -26773438 + MSTB LTR MaLR 1 426 0 1380 244 36 34 chr13 92971917 92972014 -26772884 + MLT1B LTR MaLR 2 97 -293 454 128 26 0 chr13 92972014 92972092 -26772806 + MADE1 DNA Mariner 1 80 0 1380 244 36 34 chr13 92972092 92972380 -26772518 + MLT1B LTR MaLR 97 388 -2 194 300 0 0 chr13 92972506 92972546 -26772352 - MER5A DNA MER1_type -85 104 65 274 266 9 9 chr13 92972728 92972837 -26772061 - Charlie5 DNA MER1_type 0 2617 2509 2464 173 14 50 chr13 92972886 92973452 -26771446 - L1MA7 LINE L1 0 6291 5746 284 235 15 0 chr13 92973469 92973537 -26771361 - L1MA7 LINE L1 -546 5754 5686 758 206 0 26 chr13 92973545 92973745 -26771153 - FRAM SINE Alu 0 194 1 2121 191 32 1 chr13 92973745 92974419 -26770479 - L1MA7 LINE L1 -597 5694 5002 2059 189 40 0 chr13 92974419 92974794 -26770104 - MSTB1 LTR MaLR -2 430 41 335 140 0 0 chr13 92974839 92974896 -26770002 - L1MB3 LINE L1 -27 6156 6100 318 149 0 0 chr13 92974896 92974943 -26769955 - MSTB1 LTR MaLR -381 51 5 2139 220 4 6 chr13 92974946 92975001 -26769897 - L1MA7 LINE L1 -1137 5009 4955 1840 150 37 0 chr13 92975001 92975121 -26769777 + AluSq SINE Alu 1 115 -198 336 24 0 0 chr13 92975121 92975162 -26769736 + (CA)n Simple_repeat Simple_repeat 2 42 0 1840 150 37 0 chr13 92975162 92975335 -26769563 + AluSq SINE Alu 115 305 -8 2139 220 4 6 chr13 92975335 92975757 -26769141 - L1MA7 LINE L1 -1191 4955 4533 598 238 84 75 chr13 92975794 92976021 -26768877 - MLT1F LTR MaLR -313 229 1 1362 184 43 32 chr13 92976593 92976950 -26767948 - AluJo SINE Alu 0 362 3 363 193 34 11 chr13 92977036 92977124 -26767774 - MLT1-int LTR MaLR -770 601 512 35 0 0 0 chr13 92979953 92979988 -26764910 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr13 92980033 92980061 -26764837 + AT_rich Low_complexity Low_complexity 1 28 0 1441 120 40 18 chr13 92980631 92980856 -26764042 - MER30 DNA MER1_type 0 230 1 204 184 58 11 chr13 92981050 92981096 -26763802 + (TA)n Simple_repeat Simple_repeat 1 43 -48 1947 123 0 7 chr13 92981096 92981381 -26763517 + AluSc SINE Alu 2 284 -25 204 184 58 11 chr13 92981381 92981421 -26763477 + (TA)n Simple_repeat Simple_repeat 43 91 0 332 278 83 8 chr13 92981499 92981632 -26763266 + L1MEd LINE L1 896 1038 -5081 498 295 35 74 chr13 92981747 92982289 -26762609 + L1MEd LINE L1 1211 1731 -4579 22 0 0 0 chr13 92982431 92982453 -26762445 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 92982561 92982583 -26762315 + AT_rich Low_complexity Low_complexity 1 22 0 273 246 200 0 chr13 92982685 92982815 -26762083 + L1MEd LINE L1 2212 2367 -3762 238 251 100 78 chr13 92982930 92983261 -26761637 + L1M4 LINE L1 4529 4866 -1280 444 277 141 29 chr13 92985466 92985813 -26759085 - L1ME3A LINE L1 -9 6161 5776 2113 138 0 0 chr13 92985815 92986153 -26758745 + AluSq SINE Alu 1 338 0 498 254 93 25 chr13 92986337 92986617 -26758281 - L1MEc LINE L1 -3114 3101 2803 6130 152 26 20 chr13 92986650 92988786 -26756112 - L1MA3 LINE L1 -12 6293 4125 315 284 154 18 chr13 92988914 92989199 -26755699 - L1MEc LINE L1 -3528 2687 2364 2299 257 71 34 chr13 92989453 92990376 -26754522 - L1MD2 LINE L1 -221 6138 5184 339 289 75 6 chr13 92990634 92990793 -26754105 - HAL1 LINE L1 -828 1679 1510 235 373 27 9 chr13 92990885 92990995 -26753903 - LTR16A LTR ERVL -1 449 338 291 307 118 72 chr13 92991294 92992000 -26752898 - HAL1 LINE L1 -1112 1395 658 2045 137 134 8 chr13 92992793 92993173 -26751725 + MSTA LTR MaLR 1 428 0 219 114 0 0 chr13 92993394 92993429 -26751469 + (TA)n Simple_repeat Simple_repeat 1 35 0 35 83 0 0 chr13 92993642 92993726 -26751172 + AT_rich Low_complexity Low_complexity 1 84 0 359 308 66 22 chr13 92994564 92994698 -26750200 + HAL1 LINE L1 1466 1616 -891 3549 184 65 3 chr13 92994698 92995387 -26749511 + MER44D DNA MER2_type 2 605 0 359 308 66 22 chr13 92995387 92995479 -26749419 + HAL1 LINE L1 1616 1702 -805 490 301 201 36 chr13 92995509 92996146 -26748752 + HAL1 LINE L1 1761 2502 -5 3118 77 0 45 chr13 92996482 92996554 -26748344 - LTR7 LTR ERV1 -2 448 374 880 45 0 0 chr13 92996554 92996664 -26748234 - L1PA3 LINE L1 0 6155 6046 3118 77 0 45 chr13 92996664 92997059 -26747839 - LTR7 LTR ERV1 -76 374 2 201 94 0 0 chr13 92997059 92997091 -26747807 + (TA)n Simple_repeat Simple_repeat 1 32 0 229 255 0 0 chr13 92997335 92997401 -26747497 + (CA)n Simple_repeat Simple_repeat 1 66 0 190 204 0 74 chr13 92998930 92998984 -26745914 - L2 LINE L2 0 3313 3264 421 333 55 11 chr13 92999314 92999497 -26745401 - MLT1H1 LTR MaLR -364 191 1 241 196 0 0 chr13 93000001 93000057 -26744841 - L1MEc LINE L1 -4676 1720 1665 2493 134 9 39 chr13 93000298 93000737 -26744161 + MSTC LTR MaLR 1 426 -2 732 226 77 36 chr13 93000770 93000991 -26743907 + MER93a LTR ERV1 169 398 -4 226 235 147 49 chr13 93001010 93001112 -26743786 - LTR16A LTR ERVL -338 112 1 741 65 19 0 chr13 93001410 93001518 -26743380 + AluY SINE Alu 202 311 0 229 209 30 15 chr13 93002439 93002506 -26742392 + L1MC/D LINE L1 5384 5451 -791 3657 156 29 38 chr13 93002755 93003475 -26741423 + LTR8A LTR ERV1 1 714 -13 4372 159 17 7 chr13 93003646 93004364 -26740534 - MER50 LTR ERV1 -9 725 1 398 355 49 21 chr13 93004832 93005119 -26739779 + LTR16A1 LTR ERVL 1 295 -162 1312 227 17 10 chr13 93007528 93007828 -26737070 - L1MD3 LINE L1 -1026 6969 6668 582 252 80 21 chr13 93008328 93008566 -26736332 - LTR52 LTR ERVL -162 259 8 24 32 0 0 chr13 93009161 93009192 -26735706 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr13 93009410 93009437 -26735461 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 93010380 93010405 -26734493 + AT_rich Low_complexity Low_complexity 1 25 0 532 260 83 26 chr13 93011206 93011398 -26733500 + MLT1J LTR MaLR 155 357 -154 24 0 0 0 chr13 93012037 93012061 -26732837 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 93012255 93012279 -26732619 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 93012591 93012621 -26732277 + AT_rich Low_complexity Low_complexity 1 30 0 1696 138 8 0 chr13 93012805 93013065 -26731833 + AluSx SINE Alu 38 299 -13 360 303 40 26 chr13 93013350 93013502 -26731396 + MIR SINE MIR 104 257 -5 237 376 65 11 chr13 93013640 93013826 -26731072 + MIR SINE MIR 12 207 -55 1730 108 32 0 chr13 93014020 93014271 -26730627 - AluSq SINE Alu -16 297 39 1369 179 52 62 chr13 93015268 93015433 -26729465 - AluJb SINE Alu -22 290 125 258 32 0 0 chr13 93015433 93015464 -26729434 + (TTC)n Simple_repeat Simple_repeat 1 31 0 306 0 0 0 chr13 93015465 93015499 -26729399 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1369 179 52 62 chr13 93015499 93015622 -26729276 - AluJb SINE Alu -186 126 3 6128 233 28 50 chr13 93016212 93018337 -26726561 - L1PA12 LINE L1 -3672 3912 784 1958 109 6 63 chr13 93018337 93018668 -26726230 + AluSx SINE Alu 1 312 0 6128 233 28 50 chr13 93018668 93019435 -26725463 - L1PA12 LINE L1 -6800 784 2 24 0 0 0 chr13 93019949 93019973 -26724925 + AT_rich Low_complexity Low_complexity 1 24 0 1990 106 40 30 chr13 93021289 93021592 -26723306 - AluSx SINE Alu -6 306 1 240 86 0 0 chr13 93021646 93021681 -26723217 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1985 118 0 0 chr13 93021682 93021961 -26722937 - AluSq SINE Alu -34 279 1 428 211 90 64 chr13 93022314 93022470 -26722428 - MER3 DNA MER1_type -6 203 44 325 388 77 5 chr13 93022526 93022735 -26722163 + MIR SINE MIR 34 257 -5 191 376 63 28 chr13 93023753 93024040 -26720858 - L2 LINE L2 -465 2849 2553 23 33 0 0 chr13 93024525 93024555 -26720343 + AT_rich Low_complexity Low_complexity 1 30 0 297 135 0 0 chr13 93024750 93024802 -26720096 + (TG)n Simple_repeat Simple_repeat 1 52 0 1036 234 110 47 chr13 93025094 93025417 -26719481 - MSTB2 LTR MaLR -2 455 97 2270 88 10 10 chr13 93025417 93025723 -26719175 - AluSp SINE Alu -7 306 1 1036 234 110 47 chr13 93025723 93025827 -26719071 - MSTB2 LTR MaLR -360 97 1 197 333 15 15 chr13 93026378 93026444 -26718454 + MIR3 SINE MIR 128 193 -15 21 0 0 0 chr13 93026494 93026515 -26718383 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 93027115 93027138 -26717760 + AT_rich Low_complexity Low_complexity 1 23 0 485 342 88 56 chr13 93027365 93028101 -26716797 + L2 LINE L2 1239 1998 -1316 3521 231 133 35 chr13 93028176 93028731 -26716167 + L1MD1 LINE L1 963 1462 -5078 2024 86 4 0 chr13 93028731 93028988 -26715910 + AluY SINE Alu 42 299 -12 3521 231 133 35 chr13 93028988 93029694 -26715204 + L1MD1 LINE L1 1462 2097 -4443 234 0 0 0 chr13 93029694 93029720 -26715178 + (CA)n Simple_repeat Simple_repeat 1 26 0 3521 231 133 35 chr13 93029720 93030160 -26714738 + L1MD1 LINE L1 2097 2830 -3710 41 36 0 0 chr13 93030185 93030240 -26714658 + AT_rich Low_complexity Low_complexity 1 55 0 1872 229 51 55 chr13 93030249 93031066 -26713832 + L1MD1 LINE L1 5360 6179 -457 1930 114 50 0 chr13 93031066 93031347 -26713551 - AluSg SINE Alu -7 303 9 1872 229 51 55 chr13 93031347 93031391 -26713507 + L1MD1 LINE L1 6179 6222 -414 1983 114 0 62 chr13 93031391 93031716 -26713182 - AluSc SINE Alu -4 305 1 1872 229 51 55 chr13 93031716 93031774 -26713124 + L1MD1 LINE L1 6222 6270 -366 452 115 0 13 chr13 93031799 93031877 -26713021 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 1266 215 52 7 chr13 93031881 93032169 -26712729 + L1MD1 LINE L1 6316 6616 -20 182 419 57 19 chr13 93032436 93032541 -26712357 + L2 LINE L2 3132 3240 -32 856 235 95 20 chr13 93032543 93032837 -26712061 - MER33 DNA MER1_type 0 324 9 28 29 0 0 chr13 93033072 93033107 -26711791 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr13 93033184 93033228 -26711670 + AT_rich Low_complexity Low_complexity 1 44 0 187 311 115 8 chr13 93033519 93033641 -26711257 + MIR SINE MIR 30 164 -98 183 222 0 0 chr13 93033835 93033880 -26711018 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr13 93034664 93034688 -26710210 + AT_rich Low_complexity Low_complexity 1 24 0 464 166 61 0 chr13 93035114 93035415 -26709483 + (TA)n Simple_repeat Simple_repeat 1 319 0 29 0 0 0 chr13 93035416 93035445 -26709453 + AT_rich Low_complexity Low_complexity 1 29 0 1023 166 6 0 chr13 93035457 93035614 -26709284 - AluSg/x SINE Alu -22 290 133 21 36 0 0 chr13 93035867 93035895 -26709003 + AT_rich Low_complexity Low_complexity 1 28 0 508 234 70 75 chr13 93036008 93036222 -26708676 - MER58C DNA MER1_type 0 215 3 30 77 0 0 chr13 93036588 93036653 -26708245 + AT_rich Low_complexity Low_complexity 1 65 0 180 0 0 0 chr13 93036995 93037015 -26707883 + (A)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chr13 93038627 93038663 -26706235 + AT_rich Low_complexity Low_complexity 1 36 0 184 329 25 38 chr13 93038867 93038946 -26705952 + L2 LINE L2 2881 2958 -314 2048 113 0 0 chr13 93038961 93039270 -26705628 - AluY SINE Alu 0 309 1 261 203 203 0 chr13 93039358 93039417 -26705481 + L1M4b LINE L1 11 81 -6778 1289 250 21 15 chr13 93039436 93039764 -26705134 + L1M4b LINE L1 641 970 -5889 28 29 0 0 chr13 93040162 93040197 -26704701 + AT_rich Low_complexity Low_complexity 1 35 0 2882 145 32 16 chr13 93041499 93042004 -26702894 + LTR64 LTR ERVK 1 513 0 2137 115 0 7 chr13 93042434 93042738 -26702160 + AluSg SINE Alu 3 304 -6 1118 211 86 29 chr13 93042835 93043419 -26701479 - MLT1E1 LTR MaLR 0 654 1 1336 165 28 116 chr13 93043891 93044254 -26700644 + MER44D DNA MER2_type 9 609 0 1121 171 0 90 chr13 93044436 93044670 -26700228 + AluJo SINE Alu 87 299 -13 21 36 0 0 chr13 93044825 93044853 -26700045 + AT_rich Low_complexity Low_complexity 1 28 0 181 304 196 20 chr13 93045658 93045760 -26699138 - MIR SINE MIR -94 168 49 265 318 7 36 chr13 93045788 93045987 -26698911 - L1M4 LINE L1 -1090 5056 4861 1457 314 126 12 chr13 93046122 93046693 -26698205 - MLT2F LTR ERVL -2 661 26 1519 186 54 13 chr13 93046764 93047071 -26697827 - LOR1b LTR ERV1 0 461 142 2107 163 39 34 chr13 93047071 93047619 -26697279 + MLT2A2 LTR ERVL 1 554 0 577 174 29 58 chr13 93047619 93047757 -26697141 - LOR1b LTR ERV1 -327 134 1 257 247 22 22 chr13 93047763 93047852 -26697046 + L1MC4 LINE L1 6615 6703 -1339 253 233 12 12 chr13 93047852 93047938 -26696960 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 205 339 8 24 chr13 93047953 93048077 -26696821 + (TA)n Simple_repeat Simple_repeat 1 122 0 1715 288 59 27 chr13 93048105 93049388 -26695510 - ERVL-F LTR ERVL -22 5742 4400 1841 277 67 55 chr13 93049388 93050208 -26694690 - ERVL-F LTR ERVL -2924 2840 2011 1990 172 5 11 chr13 93050208 93050580 -26694318 - L1PA12 LINE L1 -1380 4766 4397 5824 100 37 1 chr13 93050580 93051969 -26692929 + L1PA12 LINE L1 4752 6168 0 1204 320 29 11 chr13 93051975 93052418 -26692480 - ERVL-F LTR ERVL -3759 2005 1555 842 313 72 46 chr13 93052455 93052972 -26691926 - ERVL-F LTR ERVL -4285 1479 950 766 354 21 16 chr13 93053091 93053475 -26691423 - ERVL-F LTR ERVL -5062 702 317 291 292 46 46 chr13 93053600 93053730 -26691168 - ERVL-F LTR ERVL -5524 130 1 259 174 29 58 chr13 93053793 93053862 -26691036 - MLT2F LTR ERVL -115 548 482 21 71 0 0 chr13 93054038 93054080 -26690818 + AT_rich Low_complexity Low_complexity 1 42 0 347 0 23 0 chr13 93054324 93054367 -26690531 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2159 127 24 24 chr13 93054907 93055278 -26689620 - THE1C LTR MaLR -4 371 1 21 0 0 0 chr13 93055331 93055352 -26689546 + AT_rich Low_complexity Low_complexity 1 21 0 225 204 0 0 chr13 93055873 93055917 -26688981 + (TA)n Simple_repeat Simple_repeat 2 45 0 221 163 20 0 chr13 93056353 93056402 -26688496 + (TA)n Simple_repeat Simple_repeat 1 50 0 24 32 0 0 chr13 93056444 93056475 -26688423 + AT_rich Low_complexity Low_complexity 1 31 0 249 182 0 0 chr13 93056674 93056729 -26688169 + (TA)n Simple_repeat Simple_repeat 1 55 0 25 31 0 0 chr13 93056856 93056888 -26688010 + AT_rich Low_complexity Low_complexity 1 32 0 501 17 0 0 chr13 93057189 93057247 -26687651 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 2220 167 82 4 chr13 93057255 93057716 -26687182 - LOR1a LTR ERV1 0 497 1 1626 132 179 74 chr13 93057725 93058089 -26686809 - MER4A LTR ERV1 -2 662 261 547 172 0 10 chr13 93058089 93058188 -26686710 - MER4A LTR ERV1 -566 98 1 282 219 0 0 chr13 93058210 93058274 -26686624 + (CA)n Simple_repeat Simple_repeat 2 65 0 22 0 0 0 chr13 93058274 93058296 -26686602 + AT_rich Low_complexity Low_complexity 1 22 0 1646 229 41 76 chr13 93058501 93059082 -26685816 - L1ME1 LINE L1 -241 5925 5365 298 50 333 0 chr13 93059085 93059145 -26685753 - MADE1 DNA Mariner 0 80 1 1669 257 138 33 chr13 93059145 93060287 -26684611 - L1ME1 LINE L1 -782 5364 4104 18710 192 22 21 chr13 93061249 93066843 -26678055 - L1PA13 LINE L1 -3 6811 1033 3551 245 30 0 chr13 93066847 93067558 -26677340 - L1PA13 LINE L1 -6054 733 2 527 226 33 50 chr13 93068254 93068435 -26676463 - MER58 DNA MER1_type -1 2419 2242 671 279 69 38 chr13 93068721 93068983 -26675915 - MER58 DNA MER1_type -71 270 1 222 163 0 23 chr13 93070216 93070259 -26674639 + (TA)n Simple_repeat Simple_repeat 2 43 0 770 246 54 9 chr13 93070277 93070501 -26674397 - Charlie1 DNA MER1_type -2521 240 7 2528 52 0 7 chr13 93070639 93070947 -26673951 - AluY SINE Alu -5 306 1 23 116 0 0 chr13 93071670 93071791 -26673107 + AT_rich Low_complexity Low_complexity 1 121 0 1781 150 3 29 chr13 93072358 93072665 -26672233 - AluJb SINE Alu -7 305 7 23 101 0 0 chr13 93072845 93072924 -26671974 + AT_rich Low_complexity Low_complexity 1 79 0 236 296 158 54 chr13 93073311 93073514 -26671384 - L2 LINE L2 -164 3149 2926 1338 262 70 65 chr13 93073616 93074235 -26670663 + MLT1E2 LTR MaLR 1 622 -4 1834 110 0 4 chr13 93074701 93074947 -26669951 + AluSx SINE Alu 44 288 -24 27 92 0 0 chr13 93075277 93075353 -26669545 + AT_rich Low_complexity Low_complexity 1 76 0 1656 137 4 8 chr13 93075442 93075698 -26669200 + AluSx SINE Alu 14 268 -44 441 0 0 0 chr13 93075706 93075755 -26669143 + (TC)n Simple_repeat Simple_repeat 2 50 0 333 0 0 0 chr13 93075754 93075791 -26669107 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 28 0 0 0 chr13 93075936 93075964 -26668934 + AT_rich Low_complexity Low_complexity 1 28 0 1501 205 7 17 chr13 93076168 93076461 -26668437 - AluJo SINE Alu -22 290 1 22 80 0 0 chr13 93077097 93077147 -26667751 + AT_rich Low_complexity Low_complexity 1 50 0 321 26 0 0 chr13 93077729 93077767 -26667131 + (CA)n Simple_repeat Simple_repeat 2 39 0 53 40 0 0 chr13 93078603 93078677 -26666221 + AT_rich Low_complexity Low_complexity 1 74 0 2300 92 62 6 chr13 93078784 93079120 -26665778 + THE1A LTR MaLR 1 355 0 34 42 0 0 chr13 93079142 93079190 -26665708 + AT_rich Low_complexity Low_complexity 1 48 0 1040 44 7 7 chr13 93079336 93079473 -26665425 + L1PA5 LINE L1 6014 6150 -4 24 32 0 0 chr13 93079563 93079594 -26665304 + AT_rich Low_complexity Low_complexity 1 31 0 21 95 0 0 chr13 93080343 93080406 -26664492 + AT_rich Low_complexity Low_complexity 1 63 0 225 188 0 0 chr13 93080410 93080458 -26664440 + (TA)n Simple_repeat Simple_repeat 1 48 0 2035 109 0 7 chr13 93080465 93080782 -26664116 + AluSg SINE Alu 1 315 0 2086 133 7 0 chr13 93080902 93081204 -26663694 + AluSx SINE Alu 1 304 -8 1522 189 16 78 chr13 93081287 93081650 -26663248 - MLT1A1 LTR MaLR 0 365 26 1458 189 90 23 chr13 93081650 93081951 -26662947 + MSTB LTR MaLR 1 321 -105 2131 143 25 25 chr13 93081951 93082314 -26662584 - THE1B LTR MaLR 0 364 2 11440 84 22 3 chr13 93082315 93083866 -26661032 - THE1B-int LTR MaLR 0 1580 1 1903 153 48 17 chr13 93083866 93084219 -26660679 - THE1B LTR MaLR 0 364 1 1600 173 3 14 chr13 93087568 93087852 -26657046 + AluJo SINE Alu 1 281 -31 701 90 60 0 chr13 93087865 93087998 -26656900 + GA-rich Low_complexity Low_complexity 4 144 0 289 220 165 0 chr13 93088428 93088519 -26656379 + Charlie7 DNA MER1_type 2174 2279 -333 211 333 71 8 chr13 93088921 93089047 -26655851 + MIR SINE MIR 129 262 0 28 61 0 0 chr13 93090003 93090052 -26654846 + AT_rich Low_complexity Low_complexity 1 49 0 503 212 51 8 chr13 93090130 93090248 -26654650 + L2 LINE L2 2434 2556 -758 37 76 0 0 chr13 93090453 93090532 -26654366 + AT_rich Low_complexity Low_complexity 1 79 0 555 16 0 0 chr13 93090719 93090783 -26654115 + (TG)n Simple_repeat Simple_repeat 1 64 0 29 28 0 0 chr13 93091265 93091301 -26653597 + AT_rich Low_complexity Low_complexity 1 36 0 42 86 0 0 chr13 93091485 93091590 -26653308 + AT_rich Low_complexity Low_complexity 1 105 0 1220 196 119 32 chr13 93091732 93091883 -26653015 - AluJo SINE Alu -2 310 174 2000 94 0 19 chr13 93091883 93092150 -26652748 - AluSq SINE Alu -16 297 36 1220 196 119 32 chr13 93092150 93092283 -26652615 - AluJo SINE Alu -138 174 1 939 150 277 27 chr13 93092351 93092651 -26652247 - THE1C LTR MaLR 0 375 1 553 242 25 37 chr13 93092875 93093036 -26651862 + L1MC4a LINE L1 6675 6833 -975 196 389 14 0 chr13 93093178 93093250 -26651648 - L2 LINE L2 0 3313 3241 24 0 0 0 chr13 93093541 93093565 -26651333 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr13 93093901 93093938 -26650960 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr13 93096093 93096121 -26648777 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 93096199 93096220 -26648678 + AT_rich Low_complexity Low_complexity 1 21 0 917 239 158 3 chr13 93096485 93096840 -26648058 - L1MD3 LINE L1 0 7995 7586 1251 163 36 24 chr13 93096840 93097173 -26647725 + MSTA LTR MaLR 1 387 -41 491 244 49 0 chr13 93097242 93097365 -26647533 - MLT1F1 LTR MaLR -434 133 5 3250 234 42 45 chr13 93097403 93097948 -26646950 - L1MD3 LINE L1 -14 6152 6619 222 91 0 0 chr13 93097948 93097981 -26646917 + (TG)n Simple_repeat Simple_repeat 2 34 0 3250 234 42 45 chr13 93097981 93098517 -26646381 - L1MD3 LINE L1 454 6620 6084 285 278 70 9 chr13 93098864 93098979 -26645919 - L2 LINE L2 -762 2552 2431 2855 9 0 0 chr13 93099915 93100232 -26644666 + AluYb8 SINE Alu 1 317 -1 24 32 0 0 chr13 93100692 93100723 -26644175 + AT_rich Low_complexity Low_complexity 1 31 0 2095 133 22 33 chr13 93101126 93101494 -26643404 - THE1B LTR MaLR 0 364 1 1748 94 14 160 chr13 93101541 93101890 -26643008 - THE1B LTR MaLR -2 362 84 5808 61 21 0 chr13 93101890 93102642 -26642256 + L1PA7 LINE L1 5383 6150 -4 1748 94 14 160 chr13 93102642 93102716 -26642182 - THE1B LTR MaLR -280 84 1 22 35 0 0 chr13 93102942 93102971 -26641927 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 93103044 93103074 -26641824 + AT_rich Low_complexity Low_complexity 1 30 0 449 357 43 33 chr13 93105211 93105515 -26639383 - L2 LINE L2 -225 3088 2782 1354 189 76 16 chr13 93105515 93105951 -26638947 - MLT2B1 LTR ERVL 0 515 3 297 353 156 25 chr13 93105951 93106226 -26638672 - L2 LINE L2 -525 2789 2479 23 0 0 0 chr13 93106401 93106424 -26638474 + AT_rich Low_complexity Low_complexity 1 23 0 267 201 23 58 chr13 93106593 93106767 -26638131 + (TTAA)n Simple_repeat Simple_repeat 3 170 0 1745 139 4 16 chr13 93107000 93107258 -26637640 + AluSx SINE Alu 3 257 -55 270 0 0 0 chr13 93107358 93107388 -26637510 + (A)n Simple_repeat Simple_repeat 1 30 0 898 232 87 42 chr13 93107952 93108284 -26636614 + MLT1D LTR MaLR 1 347 -158 2565 210 35 62 chr13 93108285 93108980 -26635918 - LTR8 LTR ERV1 0 691 16 4764 133 28 50 chr13 93108984 93109876 -26635022 + MER4D LTR ERV1 1 872 0 641 238 19 6 chr13 93109919 93110079 -26634819 + MLT1D LTR MaLR 344 505 0 1569 254 24 46 chr13 93110081 93110862 -26634036 + MLT1D-int LTR MaLR 4 650 -721 1239 261 21 136 chr13 93110926 93111699 -26633199 + MLT1D-int LTR MaLR 661 1344 -27 601 209 52 8 chr13 93111743 93111877 -26633021 + MLT1D LTR MaLR 22 161 -344 21 82 0 0 chr13 93111993 93112042 -26632856 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr13 93112230 93112255 -26632643 + AT_rich Low_complexity Low_complexity 1 25 0 1120 110 0 11 chr13 93112542 93112554 -26632344 + (GGAA)n Simple_repeat Simple_repeat 1 191 0 1120 110 0 11 chr13 93112554 93112736 -26632162 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 734 181 65 19 chr13 93113902 93114057 -26630841 - AluSq SINE Alu -15 298 137 181 140 180 0 chr13 93115490 93115540 -26629358 - MIR SINE MIR -106 156 98 1813 109 0 19 chr13 93115917 93116182 -26628716 - AluY SINE Alu -6 305 46 278 194 15 0 chr13 93116352 93116419 -26628479 + (TTATA)n Simple_repeat Simple_repeat 2 69 0 30 0 0 0 chr13 93117177 93117207 -26627691 + AT_rich Low_complexity Low_complexity 1 30 0 4784 84 17 41 chr13 93118524 93119229 -26625669 + LTR12 LTR ERV1 1 688 0 5484 218 21 7 chr13 93119663 93121099 -26623799 - L1PA12 LINE L1 -3595 3989 2529 1810 146 79 19 chr13 93121134 93121562 -26623336 + L1P4 LINE L1 5163 5613 -553 549 293 11 35 chr13 93121558 93121933 -26622965 - L1PA12 LINE L1 -5105 2469 2182 * 235 345 69 11 chr13 93122625 93122799 -26622099 - L1M2 LINE L1 -5903 946 763 * 1058 373 39 19 chr13 93122795 93123330 -26621568 - L1PA12 LINE L1 -6203 1371 823 225 0 0 0 chr13 93123330 93123355 -26621543 + (TG)n Simple_repeat Simple_repeat 1 25 0 1058 373 39 19 chr13 93123355 93123390 -26621508 - L1PA12 LINE L1 -6751 823 790 2490 60 0 0 chr13 93123509 93123808 -26621090 - AluY SINE Alu -12 299 1 2386 54 0 35 chr13 93124153 93124466 -26620432 + AluY SINE Alu 1 302 -9 24 0 0 0 chr13 93124497 93124521 -26620377 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 93126521 93126543 -26618355 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr13 93126845 93126879 -26618019 + (CA)n Simple_repeat Simple_repeat 2 35 0 1472 179 0 23 chr13 93127579 93127842 -26617056 - AluSq SINE Alu -54 259 3 207 88 0 0 chr13 93127853 93127887 -26617011 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 193 350 186 0 chr13 93128462 93128559 -26616339 - L2 LINE L2 0 3272 3158 784 129 0 5 chr13 93128885 93129067 -26615831 - L1MA8 LINE L1 -422 5869 5624 2260 102 0 9 chr13 93129073 93129388 -26615510 - AluSx SINE Alu 0 312 1 2300 143 51 38 chr13 93129397 93129866 -26615032 + L1MA7 LINE L1 5817 6291 0 535 254 10 27 chr13 93129897 93130060 -26614838 - MER110 LTR ERV1 -111 357 163 2729 174 19 70 chr13 93130388 93131033 -26613865 - LTR9 LTR ERV1 0 612 1 1236 207 10 54 chr13 93131363 93131559 -26613339 - AluJo SINE Alu -10 302 124 213 65 0 0 chr13 93131559 93131590 -26613308 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1236 207 10 54 chr13 93131590 93131707 -26613191 - AluJo SINE Alu -188 124 3 1950 121 0 0 chr13 93131784 93132100 -26612798 - AluSx SINE Alu 0 316 1 2066 146 45 36 chr13 93132362 93132781 -26612117 + L1MA5 LINE L1 5876 6298 -2 227 250 47 14 chr13 93132961 93133109 -26611789 + (TA)n Simple_repeat Simple_repeat 1 153 0 849 241 171 98 chr13 93133886 93134458 -26610440 + LTR28 LTR ERV1 1 614 -406 330 26 0 0 chr13 93134491 93134530 -26610368 + (CA)n Simple_repeat Simple_repeat 1 39 0 41 0 0 0 chr13 93134664 93134705 -26610193 + AT_rich Low_complexity Low_complexity 1 41 0 440 99 14 0 chr13 93134725 93134796 -26610102 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 22 35 0 0 chr13 93135225 93135254 -26609644 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 93135510 93135535 -26609363 + AT_rich Low_complexity Low_complexity 1 25 0 37 81 0 0 chr13 93135781 93135867 -26609031 + AT_rich Low_complexity Low_complexity 1 86 0 10375 155 150 21 chr13 93136345 93136680 -26608218 - Tigger1 DNA MER2_type 0 2418 2128 2281 119 0 0 chr13 93136680 93136992 -26607906 - AluSx SINE Alu 0 312 1 10375 155 150 21 chr13 93136992 93138530 -26606368 - Tigger1 DNA MER2_type -290 2128 241 1829 176 17 0 chr13 93138530 93138826 -26606072 + AluJb SINE Alu 3 303 -9 10375 155 150 21 chr13 93138826 93139056 -26605842 - Tigger1 DNA MER2_type -2177 241 42 260 178 0 0 chr13 93139108 93139153 -26605745 - Tigger1 DNA MER2_type -2372 46 2 390 174 0 39 chr13 93139986 93140141 -26604757 + (TA)n Simple_repeat Simple_repeat 2 150 0 1182 214 43 33 chr13 93140462 93140761 -26604137 - AluJo SINE Alu 0 302 1 1807 215 8 20 chr13 93141274 93141669 -26603229 - L1MC3 LINE L1 -1038 6747 6358 2166 65 0 56 chr13 93141669 93141975 -26602923 - AluY SINE Alu -22 289 1 239 375 25 12 chr13 93142409 93142489 -26602409 + MER91A DNA MER1_type 116 196 0 33 103 0 0 chr13 93142554 93142671 -26602227 + AT_rich Low_complexity Low_complexity 1 117 0 38 22 0 0 chr13 93143630 93143675 -26601223 + AT_rich Low_complexity Low_complexity 1 45 0 2427 52 0 0 chr13 93144097 93144386 -26600512 + AluY SINE Alu 1 289 -22 512 177 73 0 chr13 93146543 93146667 -26598231 - L1MA7 LINE L1 0 6291 6159 1956 165 0 0 chr13 93148185 93148494 -26596404 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr13 93148701 93148722 -26596176 + AT_rich Low_complexity Low_complexity 1 21 0 670 199 281 20 chr13 93148937 93149133 -26595765 + AluSg1 SINE Alu 3 249 -60 6510 178 18 12 chr13 93149685 93151838 -26593060 + L1PA14 LINE L1 4000 6158 -3 570 333 106 62 chr13 93153062 93153498 -26591400 + L2 LINE L2 2859 3313 0 3065 173 33 8 chr13 93154278 93154913 -26589985 + L1MC1 LINE L1 5209 5859 -474 180 135 0 0 chr13 93155016 93155053 -26589845 + (A)n Simple_repeat Simple_repeat 1 37 0 2359 175 30 21 chr13 93155394 93155868 -26589030 + L1MC1 LINE L1 5856 6333 0 22 0 0 0 chr13 93157477 93157499 -26587399 + AT_rich Low_complexity Low_complexity 1 22 0 330 26 0 0 chr13 93158707 93158746 -26586152 + (TG)n Simple_repeat Simple_repeat 1 39 0 438 20 0 0 chr13 93158819 93158870 -26586028 + (TA)n Simple_repeat Simple_repeat 2 52 0 2025 134 18 52 chr13 93158881 93159269 -26585629 - THE1C LTR MaLR 0 375 1 1866 152 25 36 chr13 93160190 93160227 -26584671 + MER46B DNA MER2_type 1 37 -2694 2336 87 3 0 chr13 93160227 93160537 -26584361 + AluY SINE Alu 1 311 0 1871 154 31 0 chr13 93160537 93160862 -26584036 + MER46B DNA MER2_type 25 234 -2 2666 127 22 56 chr13 93161822 93162325 -26582573 + LTR19A LTR ERV1 1 486 0 1091 137 0 0 chr13 93162718 93162871 -26582027 + AluSp SINE Alu 137 289 -24 2345 191 23 49 chr13 93162891 93163419 -26581479 - MER67D LTR ERV1 0 514 1 234 0 0 0 chr13 93163895 93163921 -26580977 + (CAA)n Simple_repeat Simple_repeat 2 27 0 546 98 20 69 chr13 93164003 93164105 -26580793 + MER4E LTR ERV1 1 97 -682 204 163 0 0 chr13 93164273 93164316 -26580582 + (CA)n Simple_repeat Simple_repeat 2 44 0 563 293 164 83 chr13 93164920 93165301 -26579597 - LTR16A LTR ERVL -17 433 28 1476 197 13 0 chr13 93165732 93166032 -26578866 - L1MB1 LINE L1 0 6168 5865 1713 174 15 3 chr13 93166033 93166360 -26578538 + L1MB1 LINE L1 5561 5891 -298 393 376 47 21 chr13 93166410 93166833 -26578065 - ERVL LTR ERVL -727 5037 4604 698 311 44 4 chr13 93167834 93168059 -26576839 - LTR16A LTR ERVL -6 444 211 325 245 64 26 chr13 93168558 93168791 -26576107 + Zaphod DNA AcHobo 561 802 -3229 2185 98 7 0 chr13 93168992 93169279 -26575619 + AluSp SINE Alu 1 289 -24 24 67 0 0 chr13 93169279 93169324 -26575574 + AT_rich Low_complexity Low_complexity 1 45 0 627 205 8 16 chr13 93169652 93169779 -26575119 - LTR40a LTR ERVL -393 126 1 975 218 75 31 chr13 93169782 93170167 -26574731 + Zaphod DNA AcHobo 3596 3997 -34 504 0 0 0 chr13 93171433 93171489 -26573409 + (TA)n Simple_repeat Simple_repeat 2 57 0 1940 151 7 3 chr13 93171489 93171788 -26573110 - AluSx SINE Alu -12 300 1 504 0 0 0 chr13 93172080 93172136 -26572762 + (TA)n Simple_repeat Simple_repeat 2 57 0 2048 141 7 0 chr13 93172136 93172434 -26572464 - AluSx SINE Alu -12 300 1 1622 226 56 60 chr13 93172476 93173100 -26571798 - L1M4 LINE L1 -1198 4948 4326 1522 191 24 13 chr13 93173100 93173398 -26571500 + AluSx SINE Alu 1 301 -11 1622 226 56 60 chr13 93173398 93173559 -26571339 - L1M4 LINE L1 -1820 4326 4166 262 119 24 0 chr13 93173663 93173705 -26571193 - L1MCc LINE L1 -6362 61 19 28 0 0 0 chr13 93176092 93176120 -26568778 + AT_rich Low_complexity Low_complexity 1 28 0 245 240 0 0 chr13 93176701 93176751 -26568147 + MLT1C LTR MaLR 220 269 -198 1322 195 48 94 chr13 93176810 93177196 -26567702 + MER67C LTR ERV1 3 397 -243 268 230 149 0 chr13 93177245 93177332 -26567566 + MER67D LTR ERV1 384 483 -31 528 299 129 19 chr13 93177338 93177609 -26567289 - L2 LINE L2 -2181 1133 833 1997 107 7 7 chr13 93177610 93177916 -26566982 + AluY SINE Alu 1 306 0 194 61 0 30 chr13 93179082 93179115 -26565783 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 21 0 0 0 chr13 93179289 93179310 -26565588 + AT_rich Low_complexity Low_complexity 1 21 0 1603 192 47 12 chr13 93179392 93179430 -26565468 + L1MA9 LINE L1 5745 5780 -532 276 77 0 0 chr13 93179430 93179469 -26565429 + (CA)n Simple_repeat Simple_repeat 2 40 0 1603 192 47 12 chr13 93179469 93179773 -26565125 + L1MA9 LINE L1 5780 6099 -213 2132 114 3 13 chr13 93179829 93180136 -26564762 + AluSg SINE Alu 1 304 -6 2126 125 20 0 chr13 93180747 93181043 -26563855 - AluSp SINE Alu -11 302 1 925 146 36 31 chr13 93181182 93181374 -26563524 + L1MA9 LINE L1 6120 6312 0 276 224 0 15 chr13 93181559 93181626 -26563272 - L1MC/D LINE L1 -2047 5761 5696 383 266 44 44 chr13 93181801 93181959 -26562939 - L1MC/D LINE L1 -2603 5439 5282 22 0 0 0 chr13 93182158 93182180 -26562718 + AT_rich Low_complexity Low_complexity 1 22 0 1870 141 0 30 chr13 93182728 93183032 -26561866 + AluSx SINE Alu 1 295 -17 2139 112 3 10 chr13 93183422 93183725 -26561173 - AluY SINE Alu -10 301 1 22 0 0 0 chr13 93183992 93184014 -26560884 + AT_rich Low_complexity Low_complexity 1 22 0 380 260 71 24 chr13 93184492 93184619 -26560279 - MIR SINE MIR -13 249 117 3009 160 102 3 chr13 93184987 93185574 -26559324 + Tigger3b DNA MER2_type 1 645 -586 369 209 0 12 chr13 93185575 93185658 -26559240 + MLT2B1 LTR ERVL 47 128 -392 2452 144 20 2 chr13 93185658 93186055 -26558843 + MLT2A1 LTR ERVL 1 404 -40 204 158 0 0 chr13 93186058 93186096 -26558802 + (TA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr13 93186131 93186161 -26558737 + AT_rich Low_complexity Low_complexity 1 30 0 402 185 0 25 chr13 93186167 93186286 -26558612 + (TA)n Simple_repeat Simple_repeat 1 116 0 302 284 23 0 chr13 93186342 93186430 -26558468 + L1MC4 LINE L1 6614 6703 -1339 355 21 0 21 chr13 93186450 93186497 -26558401 + MLT2A1 LTR ERVL 408 453 0 14316 78 5 3 chr13 93186511 93188353 -26556545 + HERVL LTR ERVL 3421 5267 -387 2093 206 51 38 chr13 93188720 93189555 -26555343 + LTR8A-int LTR ERV1 5232 6228 -35 1699 200 42 154 chr13 93189595 93190400 -26554498 + LTR8A LTR ERV1 1 727 0 22 0 0 0 chr13 93191396 93191418 -26553480 + AT_rich Low_complexity Low_complexity 1 22 0 2287 71 53 3 chr13 93193099 93193185 -26551713 + HERVL-A1 LTR ERVL 5300 5380 -274 744 94 0 0 chr13 93193185 93193291 -26551607 + (TA)n Simple_repeat Simple_repeat 2 107 0 2287 71 53 3 chr13 93193291 93193542 -26551356 + HERVL-A1 LTR ERVL 5380 5654 0 2727 107 18 2 chr13 93193542 93193935 -26550963 + MLT2A1 LTR ERVL 1 399 -45 266 211 53 0 chr13 93193952 93194028 -26550870 - L1MC4 LINE L1 -1339 6703 6624 333 39 103 20 chr13 93194037 93194095 -26550803 + MLT2A2 LTR ERVL 399 453 0 1257 231 54 33 chr13 93194116 93194259 -26550639 + MLT2B1 LTR ERVL 181 320 -200 1574 171 0 57 chr13 93194259 93194574 -26550324 - AluJo SINE Alu -13 299 3 1257 231 54 33 chr13 93194574 93194763 -26550135 + MLT2B1 LTR ERVL 320 520 0 339 346 30 70 chr13 93195698 93195842 -26549056 + L2 LINE L2 2373 2521 -793 1929 141 0 46 chr13 93195842 93196169 -26548729 + AluSx SINE Alu 1 312 0 339 346 30 70 chr13 93196169 93196353 -26548545 + L2 LINE L2 2521 2688 -626 261 328 88 50 chr13 93196595 93196857 -26548041 - MLT1K LTR MaLR -220 368 97 886 170 87 19 chr13 93197133 93197339 -26547559 + AluJo SINE Alu 91 310 -2 24 0 0 0 chr13 93197567 93197591 -26547307 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 93197931 93197952 -26546946 + AT_rich Low_complexity Low_complexity 1 21 0 259 266 13 13 chr13 93198683 93198762 -26546136 - L1MEd LINE L1 -5419 700 622 1792 186 53 48 chr13 93199608 93200154 -26544744 - MLT2A2 LTR ERVL -2 552 1 10065 108 7 4 chr13 93200154 93201584 -26543314 - HERVL-A2 LTR ERVL 0 5654 4221 2508 136 0 3 chr13 93201584 93201960 -26542938 - THE1C LTR MaLR 0 375 1 9093 135 16 61 chr13 93201960 93203239 -26541659 - THE1C-int LTR MaLR 0 1580 391 1967 138 3 3 chr13 93203239 93203536 -26541362 + AluSc SINE Alu 1 297 -12 9093 135 16 61 chr13 93203536 93203911 -26540987 - THE1C-int LTR MaLR -1189 391 1 2342 141 33 0 chr13 93203911 93204274 -26540624 - THE1C LTR MaLR 0 375 1 29 60 0 0 chr13 93205222 93205272 -26539626 + AT_rich Low_complexity Low_complexity 1 50 0 191 61 30 0 chr13 93205572 93205605 -26539293 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1079 16 0 0 chr13 93205607 93205731 -26539167 - L1PA2 LINE L1 -7 6148 6025 22 0 0 0 chr13 93205891 93205913 -26538985 + AT_rich Low_complexity Low_complexity 1 22 0 746 221 23 35 chr13 93207078 93207250 -26537648 + MLT1E LTR MaLR 40 209 -384 950 259 99 4 chr13 93207307 93207550 -26537348 + MLT1E LTR MaLR 328 593 0 5819 68 7 44 chr13 93207623 93208433 -26536465 - LTR17 LTR ERV1 0 780 1 815 196 7 0 chr13 93208842 93208990 -26535908 + AluJb SINE Alu 156 304 -8 237 341 0 0 chr13 93209086 93209168 -26535730 - MIR SINE MIR -114 148 67 27 49 0 0 chr13 93209409 93209450 -26535448 + AT_rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr13 93209679 93209700 -26535198 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1325 214 10 32 chr13 93210317 93210626 -26534272 - AluJb SINE Alu -7 305 4 22 0 0 0 chr13 93211204 93211226 -26533672 + AT_rich Low_complexity Low_complexity 1 22 0 210 143 0 0 chr13 93212402 93212437 -26532461 + (T)n Simple_repeat Simple_repeat 1 35 0 6111 99 4 0 chr13 93213050 93214042 -26530856 - L1PA10 LINE L1 -5 6163 5175 651 120 0 0 chr13 93214042 93214150 -26530748 + L1P LINE L1 4392 4499 -1647 482 254 51 51 chr13 93214921 93215118 -26529780 + L2 LINE L2 3117 3313 0 450 419 55 7 chr13 93215400 93215820 -26529078 - L2 LINE L2 -11 3302 2863 673 297 104 86 chr13 93215976 93216244 -26528654 - L2 LINE L2 -666 2648 2365 2096 100 0 51 chr13 93216244 93216555 -26528343 + AluSc SINE Alu 1 295 -14 673 297 104 86 chr13 93216555 93216795 -26528103 - L2 LINE L2 -949 2365 2131 181 183 65 11 chr13 93217041 93217134 -26527764 + CT-rich Low_complexity Low_complexity 3 100 0 263 191 0 64 chr13 93217186 93217296 -26527602 + (TTATA)n Simple_repeat Simple_repeat 3 105 0 2117 159 64 17 chr13 93218547 93218955 -26525943 - MSTA LTR MaLR -1 427 1 26 30 0 0 chr13 93219641 93219674 -26525224 + AT_rich Low_complexity Low_complexity 1 33 0 185 359 120 0 chr13 93219905 93220047 -26524851 - MIR SINE MIR -55 207 49 560 310 38 0 chr13 93221344 93221502 -26523396 - MER5A DNA MER1_type -6 183 20 456 312 149 18 chr13 93221901 93222122 -26522776 - MIR SINE MIR -10 252 3 685 316 86 6 chr13 93224290 93224440 -26520458 - ERVL LTR ERVL -699 5065 4928 1209 196 44 50 chr13 93224440 93224803 -26520095 + MLT1A1 LTR MaLR 5 365 0 685 316 86 6 chr13 93224803 93224978 -26519920 - ERVL LTR ERVL -836 4928 4714 290 355 59 7 chr13 93225267 93225419 -26519479 - L1ME3A LINE L1 -85 6085 5926 1606 131 113 7 chr13 93226033 93226308 -26518590 + AluSg1 SINE Alu 1 304 -5 1692 277 85 22 chr13 93226354 93226525 -26518373 - L1MEc LINE L1 -2196 4019 3860 1536 195 14 14 chr13 93226525 93226689 -26518209 - AluJo SINE Alu -15 297 131 1998 119 6 22 chr13 93226689 93227007 -26517891 - AluSq SINE Alu 0 313 1 1536 195 14 14 chr13 93227007 93227139 -26517759 - AluJo SINE Alu -180 132 1 1692 277 85 22 chr13 93227139 93228223 -26516675 - L1MEc LINE L1 -2355 3860 2538 1501 269 89 24 chr13 93228297 93228880 -26516018 + MLT1E2 LTR MaLR 5 625 -1 326 176 24 35 chr13 93228883 93228968 -26515930 - L1MEc LINE L1 -4335 2061 1978 1150 259 93 44 chr13 93228970 93229399 -26515499 + MLT1C LTR MaLR 18 467 0 395 259 80 19 chr13 93229399 93229561 -26515337 + MLT1H1 LTR MaLR 376 547 -8 231 267 35 23 chr13 93229721 93229807 -26515091 + MLT1H1-int LTR MaLR 272 358 -1013 4313 234 62 33 chr13 93231415 93232797 -26512101 - Charlie1a DNA MER1_type -1 1454 32 21 0 0 0 chr13 93233159 93233180 -26511718 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 93233594 93233620 -26511278 + AT_rich Low_complexity Low_complexity 1 26 0 2425 241 38 29 chr13 93234298 93235032 -26509866 - L1ME1 LINE L1 -50 6116 5376 627 66 33 16 chr13 93235036 93235157 -26509741 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 741 208 151 42 chr13 93235677 93235869 -26509029 - MER20 DNA MER1_type -5 214 2 1693 244 34 16 chr13 93235888 93236391 -26508507 + Charlie1b DNA MER1_type 12 523 0 456 293 47 31 chr13 93237015 93237206 -26507692 + MIR SINE MIR 23 216 -46 5315 154 25 49 chr13 93237934 93239486 -26505412 - L1MA4A LINE L1 -11 6292 4778 28 48 0 0 chr13 93239630 93239672 -26505226 + AT_rich Low_complexity Low_complexity 1 42 0 830 104 32 0 chr13 93239783 93239908 -26504990 - L1P5 LINE L1 -424 5732 5604 21 82 0 0 chr13 93242225 93242274 -26502624 + AT_rich Low_complexity Low_complexity 1 49 0 3231 137 4 4 chr13 93242371 93242868 -26502030 + LOR1a LTR ERV1 1 497 0 1787 189 61 5 chr13 93243012 93243440 -26501458 + L1MB1 LINE L1 3334 3785 -2361 2873 220 30 14 chr13 93243454 93244177 -26500721 + L1MB1 LINE L1 3999 4733 -1413 1820 245 91 26 chr13 93244177 93244816 -26500082 + MER50 LTR ERV1 1 711 -23 3797 202 39 40 chr13 93244817 93245337 -26499561 + L1MB1 LINE L1 4730 5249 -919 2098 137 8 38 chr13 93245337 93245703 -26499195 - THE1A LTR MaLR 0 355 1 11186 106 4 2 chr13 93245703 93247280 -26497618 - THE1A-int LTR MaLR 0 1580 1 2113 124 32 11 chr13 93247280 93247628 -26497270 - THE1A LTR MaLR 0 355 1 3797 202 39 40 chr13 93247628 93248513 -26496385 + L1MB1 LINE L1 5246 6135 -33 2020 117 7 0 chr13 93248513 93248794 -26496104 + AluSc SINE Alu 1 283 -26 234 0 0 0 chr13 93248798 93248824 -26496074 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 21 36 0 0 chr13 93249409 93249437 -26495461 + AT_rich Low_complexity Low_complexity 1 28 0 458 272 57 63 chr13 93249482 93249640 -26495258 + MER5B DNA MER1_type 2 158 -20 257 333 0 0 chr13 93249650 93249719 -26495179 + HERV16 LTR ERVL 2837 2905 -2091 1000 172 69 17 chr13 93249720 93250077 -26494821 + MER65B LTR ERV1 1 445 0 2271 185 7 35 chr13 93250758 93251213 -26493685 + LOR1a LTR ERV1 53 494 -3 1678 203 10 0 chr13 93251216 93251516 -26493382 + LOR1a-int LTR ERV1 1 303 -7817 2372 88 2 180 chr13 93251519 93252040 -26492858 + THE1C-int LTR MaLR 1153 1580 0 1409 132 63 41 chr13 93252040 93252367 -26492531 + THE1C LTR MaLR 1 375 0 279 79 0 0 chr13 93252554 93252592 -26492306 + (GA)n Simple_repeat Simple_repeat 2 39 0 446 239 0 9 chr13 93252670 93252779 -26492119 + LOR1a-int LTR ERV1 423 530 -7590 309 254 0 0 chr13 93252810 93252873 -26492025 + LOR1a-int LTR ERV1 527 589 -7531 432 364 22 42 chr13 93253265 93253718 -26491180 + LOR1a-int LTR ERV1 953 1396 -5726 2080 119 0 31 chr13 93254493 93254813 -26490085 + AluSg SINE Alu 1 310 0 1793 333 64 46 chr13 93255228 93256926 -26487972 + LOR1a-int LTR ERV1 2598 4384 -2868 457 287 16 32 chr13 93257286 93257474 -26487424 + LOR1a-int LTR ERV1 5365 5549 -2207 452 165 59 0 chr13 93257499 93257584 -26487314 - LTR48 LTR ERV1 -124 663 574 908 224 155 22 chr13 93257709 93257986 -26486912 - LTR48 LTR ERV1 -473 314 1 848 216 56 86 chr13 93258074 93258342 -26486556 - LTR48-int LTR ERV1 -158 6173 5914 3207 171 46 21 chr13 93258377 93259056 -26485842 - LTR48-int LTR ERV1 -494 5837 5142 453 173 71 39 chr13 93259062 93259238 -26485660 - AluY SINE Alu 0 333 154 2534 211 36 52 chr13 93259265 93259937 -26484961 - MER39-int LTR ERV1 -3230 3101 2441 1163 258 18 78 chr13 93260262 93260568 -26484330 - MER39-int LTR ERV1 -4060 2271 1991 5612 84 64 0 chr13 93260568 93261344 -26483554 + LTR12 LTR ERV1 1 826 0 1163 258 18 78 chr13 93261344 93261421 -26483477 - MER39-int LTR ERV1 -4340 1991 1911 1537 216 52 54 chr13 93261476 93261783 -26483115 - MER39-int LTR ERV1 -4329 1904 1598 480 48 0 0 chr13 93261783 93261846 -26483052 + (TA)n Simple_repeat Simple_repeat 1 63 0 1537 216 52 54 chr13 93261846 93262128 -26482770 - MER39-int LTR ERV1 -4635 1598 305 4219 113 12 3 chr13 93262129 93262774 -26482124 + L1PA13 LINE L1 5513 6163 0 493 229 18 48 chr13 93263242 93263460 -26481438 - MER39 LTR ERV1 0 766 579 254 91 0 0 chr13 93263458 93263491 -26481407 - LTR48B LTR ERV1 -248 396 364 * 443 217 101 8 chr13 93263558 93263687 -26481211 - LTR48 LTR ERV1 -438 349 209 275 221 248 44 chr13 93263681 93263794 -26481104 - MER39 LTR ERV1 -567 140 5 * 2210 56 0 4 chr13 93263808 93264078 -26480820 + AluSg SINE Alu 39 307 -3 292 271 0 35 chr13 93264582 93264667 -26480231 - MLT1J LTR MaLR -293 218 137 236 125 0 0 chr13 93264798 93264830 -26480068 + Alu SINE Alu 5 36 -266 1811 173 3 0 chr13 93265076 93265382 -26479516 - AluSx SINE Alu 0 312 6 2114 128 0 3 chr13 93265570 93265883 -26479015 - AluSx SINE Alu 0 312 1 2330 227 69 25 chr13 93266614 93267223 -26477675 + MER92B LTR ERV1 1 636 0 428 223 68 0 chr13 93267223 93267326 -26477572 + L1MD3 LINE L1 7876 7985 -10 26 0 0 0 chr13 93267373 93267399 -26477499 + AT_rich Low_complexity Low_complexity 1 26 0 1473 230 7 56 chr13 93267855 93268281 -26476617 + MER31A LTR ERV1 1 405 -80 1502 224 25 14 chr13 93268729 93269087 -26475811 + L1MC1 LINE L1 5955 6316 -17 1679 181 47 3 chr13 93270615 93270957 -26473941 + MER46B DNA MER2_type 4 235 -1 2298 221 19 7 chr13 93271371 93271833 -26473065 - MER70A LTR ERVL -4 468 1 684 12 0 0 chr13 93271927 93272010 -26472888 - L1HS LINE L1 0 6155 6073 255 308 51 0 chr13 93272097 93272175 -26472723 + MIR SINE MIR 59 140 -122 21 36 0 0 chr13 93272210 93272238 -26472660 + AT_rich Low_complexity Low_complexity 1 28 0 534 70 0 0 chr13 93272901 93272972 -26471926 + (CA)n Simple_repeat Simple_repeat 2 72 0 195 397 0 0 chr13 93273054 93273117 -26471781 + MIR SINE MIR 59 121 -87 269 353 15 68 chr13 93273129 93273262 -26471636 - L2 LINE L2 -30 3242 3117 23 68 0 0 chr13 93273501 93273545 -26471353 + AT_rich Low_complexity Low_complexity 1 44 0 55 89 0 0 chr13 93274124 93274270 -26470628 + AT_rich Low_complexity Low_complexity 1 146 0 546 133 0 0 chr13 93275520 93275610 -26469288 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 7786 131 2 2 chr13 93276604 93277831 -26467067 - L1PA8A LINE L1 -822 5324 4097 2192 79 3 0 chr13 93277829 93278120 -26466778 + L1PA8A LINE L1 5324 5615 -516 * 585 104 0 0 chr13 93278114 93278191 -26466707 - L1P LINE L1 -1973 4173 4097 * 271 188 0 0 chr13 93278189 93278237 -26466661 + L1PA8A LINE L1 5324 5371 -784 * 3665 96 4 17 chr13 93278237 93278771 -26466127 + L1PA8A LINE L1 5605 6131 0 24 0 0 0 chr13 93279073 93279097 -26465801 + AT_rich Low_complexity Low_complexity 1 24 0 246 255 0 0 chr13 93279679 93279730 -26465168 - MIR SINE MIR -65 143 93 300 27 0 0 chr13 93280152 93280189 -26464709 + (TG)n Simple_repeat Simple_repeat 1 37 0 197 303 126 46 chr13 93280426 93280601 -26464297 - L2 LINE L2 -604 2710 2522 301 260 39 10 chr13 93280786 93280890 -26464008 - L1MEd LINE L1 -4914 1205 1099 439 296 66 15 chr13 93281938 93282134 -26462764 - MLT1K LTR MaLR -2 586 381 2513 222 47 17 chr13 93283586 93284191 -26460707 - MLT1E3 LTR MaLR -2 609 1 16921 168 48 36 chr13 93284409 93286138 -26458760 + L1M1 LINE L1 13 1720 -5845 288 0 0 0 chr13 93286138 93286170 -26458728 + (CA)n Simple_repeat Simple_repeat 1 32 0 16921 168 48 36 chr13 93286170 93286349 -26458549 + L1M1 LINE L1 1720 1895 -5670 2092 74 0 0 chr13 93286349 93286628 -26458270 + AluY SINE Alu 28 306 0 16921 168 48 36 chr13 93286628 93288045 -26456853 + L1M1 LINE L1 1895 3379 -4186 521 157 46 9 chr13 93288032 93288140 -26456758 + L1MA2 LINE L1 5777 5888 -417 * 2007 135 18 3 chr13 93288149 93288489 -26456409 + L1MA2 LINE L1 5960 6304 0 802 303 82 60 chr13 93288645 93289506 -26455392 - HAL1 LINE L1 -31 2476 1597 528 301 42 69 chr13 93289831 93290093 -26454805 + MIR SINE MIR 8 262 0 215 403 14 0 chr13 93290767 93290911 -26453987 - MIR3 SINE MIR -9 199 54 21 0 0 0 chr13 93290996 93291017 -26453881 + AT_rich Low_complexity Low_complexity 1 21 0 379 228 139 0 chr13 93291943 93292044 -26452854 + MIR SINE MIR 117 231 -31 241 151 85 19 chr13 93292086 93292192 -26452706 + (TA)n Simple_repeat Simple_repeat 1 113 0 1974 138 19 28 chr13 93292939 93293301 -26451597 - L1PB4 LINE L1 0 6156 5798 820 228 97 10 chr13 93293326 93293616 -26451282 - L1PB4 LINE L1 -834 5312 4998 1475 211 18 23 chr13 93293679 93294073 -26450825 - L1PB4 LINE L1 -1886 4260 3869 2282 99 0 0 chr13 93294248 93294550 -26450348 - AluSg SINE Alu -8 302 1 26 0 0 0 chr13 93294873 93294899 -26449999 + AT_rich Low_complexity Low_complexity 1 26 0 193 286 61 20 chr13 93295184 93295282 -26449616 - MIR SINE MIR -74 188 87 2300 66 0 47 chr13 93295627 93295946 -26448952 + AluY SINE Alu 1 304 -7 320 308 20 9 chr13 93295952 93296060 -26448838 + MIR SINE MIR 7 117 -91 427 72 0 29 chr13 93296085 93296154 -26448744 - L1PA6 LINE L1 -2 6152 6086 2282 51 65 0 chr13 93296770 93297062 -26447836 + AluY SINE Alu 1 311 0 1830 133 0 0 chr13 93297173 93297437 -26447461 + AluSx SINE Alu 1 264 -48 507 326 61 13 chr13 93297498 93297728 -26447170 - LTR40b LTR ERVL -2 460 220 23 54 0 0 chr13 93298790 93298827 -26446071 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 93298948 93298971 -26445927 + AT_rich Low_complexity Low_complexity 1 23 0 30 45 0 0 chr13 93299211 93299255 -26445643 + AT_rich Low_complexity Low_complexity 1 44 0 1903 137 38 41 chr13 93299565 93299930 -26444968 - THE1B LTR MaLR 0 364 1 61 80 0 0 chr13 93300057 93300195 -26444703 + AT_rich Low_complexity Low_complexity 1 138 0 1761 196 49 35 chr13 93301265 93301804 -26443094 - MLT2A2 LTR ERVL 0 554 1 195 42 0 0 chr13 93302747 93302771 -26442127 + (TG)n Simple_repeat Simple_repeat 2 25 0 31 26 0 0 chr13 93302862 93302900 -26441998 + AT_rich Low_complexity Low_complexity 1 38 0 227 170 0 0 chr13 93302928 93302975 -26441923 - L1MA7 LINE L1 -11 6280 6234 248 89 0 0 chr13 93302977 93303022 -26441876 - LTR66 LTR ERVL -172 438 394 579 122 13 0 chr13 93303053 93303206 -26441692 - L1MA7 LINE L1 -73 6218 5958 32 0 0 0 chr13 93303665 93303697 -26441201 + AT_rich Low_complexity Low_complexity 1 32 0 237 293 120 30 chr13 93303934 93304067 -26440831 - MIR3 SINE MIR -32 176 32 2309 71 0 0 chr13 93304478 93304805 -26440093 - AluY SINE Alu 0 327 1 32 0 0 0 chr13 93307035 93307067 -26437831 + AT_rich Low_complexity Low_complexity 1 32 0 2216 79 10 0 chr13 93307251 93307543 -26437355 + AluSg SINE Alu 1 295 -15 252 0 0 0 chr13 93307805 93307833 -26437065 + (TC)n Simple_repeat Simple_repeat 1 28 0 198 103 0 0 chr13 93307832 93307861 -26437037 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 26 0 0 0 chr13 93309025 93309051 -26435847 + AT_rich Low_complexity Low_complexity 1 26 0 252 167 0 0 chr13 93309101 93309149 -26435749 + (TA)n Simple_repeat Simple_repeat 1 48 0 35 24 0 0 chr13 93310193 93310235 -26434663 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr13 93312895 93312923 -26431975 + AT_rich Low_complexity Low_complexity 1 28 0 180 316 127 0 chr13 93313041 93313120 -26431778 + L2 LINE L2 113 201 -3113 207 162 0 0 chr13 93313565 93313602 -26431296 + (CA)n Simple_repeat Simple_repeat 1 37 0 5799 145 9 24 chr13 93314254 93314391 -26430507 - L1P LINE L1 -4153 1993 1856 2276 60 0 11 chr13 93314391 93314757 -26430141 + AluY SINE Alu 1 363 0 5799 145 9 24 chr13 93314757 93315678 -26429220 - L1P LINE L1 -4290 1856 949 242 218 10 40 chr13 93315680 93315699 -26429199 + (TA)n Simple_repeat Simple_repeat 2 20 -79 2216 109 0 10 chr13 93315699 93316011 -26428887 - AluSc SINE Alu 0 309 1 242 218 10 40 chr13 93316011 93316092 -26428806 + (TA)n Simple_repeat Simple_repeat 20 99 0 315 0 0 0 chr13 93316606 93316641 -26428257 + (CA)n Simple_repeat Simple_repeat 2 36 0 32 0 0 0 chr13 93317008 93317040 -26427858 + AT_rich Low_complexity Low_complexity 1 32 0 284 317 0 0 chr13 93317078 93317160 -26427738 + L2 LINE L2 2239 2320 -994 223 214 0 0 chr13 93317160 93317202 -26427696 + L2 LINE L2 2724 2765 -549 1181 200 101 48 chr13 93317202 93317557 -26427341 + MLT1A2 LTR MaLR 1 374 0 980 295 19 31 chr13 93317628 93317947 -26426951 + MLT1H LTR MaLR 44 358 -191 21 36 0 0 chr13 93317951 93317979 -26426919 + AT_rich Low_complexity Low_complexity 1 28 0 1133 164 18 0 chr13 93318139 93318365 -26426533 + L1MA7 LINE L1 6055 6284 -7 272 328 70 23 chr13 93318583 93318842 -26426056 + L1ME LINE L1 5444 5714 -448 21 36 0 0 chr13 93319032 93319060 -26425838 + AT_rich Low_complexity Low_complexity 1 28 0 908 222 16 0 chr13 93319872 93320057 -26424841 - MER2 DNA MER2_type -135 210 23 196 359 132 41 chr13 93320102 93320397 -26424501 + L2 LINE L2 1833 2154 -1160 343 345 116 29 chr13 93320413 93320758 -26424140 + L2 LINE L2 2299 2673 -641 1411 143 14 9 chr13 93321059 93321282 -26423616 - AluSg/x SINE Alu -15 295 72 257 369 78 14 chr13 93321361 93321502 -26423396 + L2 LINE L2 3162 3311 -2 34 65 0 0 chr13 93321659 93321721 -26423177 + AT_rich Low_complexity Low_complexity 1 62 0 606 298 86 12 chr13 93322075 93322320 -26422578 - MLT1G LTR MaLR -313 277 15 8404 210 41 65 chr13 93322557 93324166 -26420732 - L1MC1 LINE L1 -2 6611 4964 2310 87 0 0 chr13 93324166 93324477 -26420421 - AluY SINE Alu 0 311 1 8404 210 41 65 chr13 93324477 93325763 -26419135 - L1MC1 LINE L1 -1649 4964 3648 475 88 22 0 chr13 93325763 93325854 -26419044 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 8404 210 41 65 chr13 93325854 93327622 -26417276 - L1MC1 LINE L1 -2965 3648 1839 258 95 0 0 chr13 93327622 93327664 -26417234 + (CA)n Simple_repeat Simple_repeat 1 42 0 8404 210 41 65 chr13 93327664 93327770 -26417128 - L1MC1 LINE L1 -4774 1839 1732 1749 227 11 30 chr13 93327770 93328210 -26416688 - Tigger2a DNA MER2_type -1 433 2 8404 210 41 65 chr13 93328210 93328501 -26416397 - L1MC1 LINE L1 -4881 1732 1435 2095 91 0 7 chr13 93328501 93328776 -26416122 - AluSc SINE Alu -13 296 24 8404 210 41 65 chr13 93328776 93328887 -26416011 - L1MC1 LINE L1 -5178 1435 1323 213 39 0 0 chr13 93328887 93328913 -26415985 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8404 210 41 65 chr13 93328913 93329245 -26415653 - L1MC1 LINE L1 -5290 1323 984 1579 209 31 8 chr13 93329245 93329603 -26415295 - MER47A DNA MER2_type 0 366 1 8404 210 41 65 chr13 93329603 93330853 -26414045 - L1MC1 LINE L1 -5629 984 28 32 43 0 0 chr13 93331342 93331388 -26413510 + AT_rich Low_complexity Low_complexity 1 46 0 602 223 45 19 chr13 93331912 93332069 -26412829 + MER106A DNA MER1_type 72 232 -4 1331 210 61 9 chr13 93332862 93333191 -26411707 - L1MB7 LINE L1 -48 6136 5791 571 284 73 64 chr13 93333354 93333681 -26411217 + L1M4 LINE L1 25 354 -6188 * 5001 245 106 25 chr13 93333678 93335309 -26409589 + L1MC3 LINE L1 6007 7770 -15 201 257 9 38 chr13 93335328 93335433 -26409465 + A-rich Low_complexity Low_complexity 3 104 0 33 25 0 0 chr13 93336484 93336524 -26408374 + AT_rich Low_complexity Low_complexity 1 40 0 767 203 52 51 chr13 93336916 93337304 -26407594 + MER52A LTR ERV1 1 1755 0 210 118 0 0 chr13 93339452 93339486 -26405412 + (CATA)n Simple_repeat Simple_repeat 2 35 0 793 299 39 92 chr13 93341548 93341695 -26403203 + MLT1E2 LTR MaLR 70 223 -403 1117 101 32 16 chr13 93341695 93341884 -26403014 + L1MA5A LINE L1 6100 6291 -6 793 299 39 92 chr13 93341884 93342322 -26402576 + MLT1E2 LTR MaLR 223 626 0 1244 132 10 5 chr13 93342360 93342564 -26402334 - MER65A LTR ERV1 0 445 241 764 153 97 33 chr13 93342573 93342759 -26402139 - THE1C LTR MaLR -189 186 1 631 156 17 117 chr13 93342759 93342939 -26401959 - MER65B LTR ERV1 -367 164 3 255 359 39 0 chr13 93343258 93343361 -26401537 - L2 LINE L2 -23 3249 3143 307 250 91 30 chr13 93343511 93343643 -26401255 - L2 LINE L2 -579 2735 2596 1684 246 102 7 chr13 93343907 93344366 -26400532 + MLT1D LTR MaLR 1 503 -2 504 104 0 13 chr13 93344903 93344980 -26399918 + MADE1 DNA Mariner 1 76 -4 21 0 0 0 chr13 93345286 93345307 -26399591 + AT_rich Low_complexity Low_complexity 1 21 0 433 335 25 3 chr13 93345943 93346221 -26398677 + L1ME LINE L1 5266 5554 -608 369 171 0 14 chr13 93346337 93346407 -26398491 + HsTC2 DNA Tc2 1827 1895 -3 510 290 74 19 chr13 93347731 93347893 -26397005 - MER45A DNA AcHobo 0 178 8 249 57 0 0 chr13 93348039 93348074 -26396824 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 246 196 20 0 chr13 93348414 93348465 -26396433 + L2 LINE L2 3262 3313 0 504 88 0 0 chr13 93348839 93348907 -26395991 - L1PA3 LINE L1 -3 6152 6082 198 0 0 0 chr13 93348907 93348929 -26395969 + (GA)n Simple_repeat Simple_repeat 1 22 0 504 88 0 0 chr13 93348929 93348940 -26395958 - L1PA3 LINE L1 -72 6083 6073 229 234 16 0 chr13 93349668 93349732 -26395166 + (TA)n Simple_repeat Simple_repeat 1 65 0 198 71 0 0 chr13 93350655 93350683 -26394215 + (TG)n Simple_repeat Simple_repeat 2 29 0 418 228 108 19 chr13 93351440 93351598 -26393300 + L1MC4a LINE L1 6210 6381 -1427 766 212 45 30 chr13 93352058 93352288 -26392610 + MER61D LTR ERV1 338 1239 -13 1454 277 141 15 chr13 93352317 93353236 -26391662 + L1MC4 LINE L1 6500 7635 -407 301 366 16 33 chr13 93353625 93353808 -26391090 + HAL1 LINE L1 436 615 -1892 1132 261 124 8 chr13 93353938 93354460 -26390438 - L1MEc LINE L1 -2904 3311 2729 976 281 70 9 chr13 93354465 93355248 -26389650 - L1MEc LINE L1 -3524 2691 1807 855 282 44 37 chr13 93355273 93355840 -26389058 - L1MEc LINE L1 -4676 1720 1150 1102 118 0 35 chr13 93355868 93356038 -26388860 - AluSc SINE Alu -21 288 125 2098 285 89 15 chr13 93356038 93356921 -26387977 - L1MEc LINE L1 -5333 1063 115 209 231 0 15 chr13 93356922 93356987 -26387911 + (TA)n Simple_repeat Simple_repeat 2 65 0 302 258 6 18 chr13 93356999 93357162 -26387736 + (TA)n Simple_repeat Simple_repeat 1 161 0 416 269 15 76 chr13 93357626 93357823 -26387075 + L2 LINE L2 3126 3310 -3 290 337 0 31 chr13 93358253 93358416 -26386482 + CT-rich Low_complexity Low_complexity 3 160 0 287 333 15 53 chr13 93358427 93358559 -26386339 - L2 LINE L2 -1 3312 3186 3301 226 42 30 chr13 93358627 93359693 -26385205 + L1PB4 LINE L1 2954 4032 -2114 1221 213 70 29 chr13 93359694 93359934 -26384964 + L1MA9 LINE L1 5966 6223 -89 1662 170 59 12 chr13 93359934 93360257 -26384641 - MER44D DNA MER2_type 0 609 2 1221 213 70 29 chr13 93360257 93360330 -26384568 + L1MA9 LINE L1 6223 6292 -20 4353 161 14 49 chr13 93360361 93361423 -26383475 + L1PB4 LINE L1 5127 6153 -3 207 114 0 0 chr13 93361554 93361589 -26383309 + (TG)n Simple_repeat Simple_repeat 2 36 0 196 389 37 0 chr13 93362019 93362127 -26382771 + L2 LINE L2 2551 2662 -652 309 344 38 0 chr13 93362257 93362414 -26382484 + MIR SINE MIR 97 259 -3 337 220 44 11 chr13 93363007 93363098 -26381800 - MER34 LTR ERV1 -27 515 422 950 240 121 32 chr13 93363108 93363421 -26381477 + MER2 DNA MER2_type 5 345 0 248 326 22 0 chr13 93363423 93363512 -26381386 - MER34 LTR ERV1 -127 415 325 2347 80 0 10 chr13 93363543 93363856 -26381042 + AluY SINE Alu 1 310 -1 240 117 17 50 chr13 93363867 93363927 -26380971 + (CTTAT)n Simple_repeat Simple_repeat 4 61 0 1176 184 37 12 chr13 93363927 93364171 -26380727 - MER34 LTR ERV1 -290 252 3 244 348 0 8 chr13 93364348 93364466 -26380432 - HAL1 LINE L1 -862 1645 1529 1178 0 0 0 chr13 93365012 93365144 -26379754 + AluY SINE Alu 174 305 -6 315 320 133 7 chr13 93365592 93365742 -26379156 + L2 LINE L2 2561 2729 -585 310 365 30 30 chr13 93366028 93366329 -26378569 + L2 LINE L2 2825 3125 -188 880 255 15 19 chr13 93366554 93366813 -26378085 + Charlie4 DNA MER1_type 22 279 -1682 425 367 118 9 chr13 93367317 93367546 -26377352 - MIR SINE MIR 0 262 9 180 344 32 32 chr13 93368354 93368447 -26376451 + MER5A DNA MER1_type 28 120 -69 29 0 0 0 chr13 93368466 93368495 -26376403 + AT_rich Low_complexity Low_complexity 1 29 0 2661 148 49 27 chr13 93369233 93369760 -26375138 - L1MA4A LINE L1 0 6303 5765 345 47 0 0 chr13 93369876 93369919 -26374979 + (TG)n Simple_repeat Simple_repeat 2 44 0 1588 118 12 8 chr13 93369920 93370166 -26374732 - AluSc SINE Alu -24 285 39 25 65 0 0 chr13 93370663 93370709 -26374189 + AT_rich Low_complexity Low_complexity 1 46 0 262 244 23 12 chr13 93370877 93370963 -26373935 - MLT1H LTR MaLR 0 549 463 347 242 70 31 chr13 93371196 93371324 -26373574 - MLT1H LTR MaLR -416 133 1 1588 111 62 0 chr13 93372912 93373155 -26371743 - AluY SINE Alu -16 295 38 25 31 0 0 chr13 93373361 93373393 -26371505 + AT_rich Low_complexity Low_complexity 1 32 0 1594 194 45 21 chr13 93374448 93374784 -26370114 - MER2 DNA MER2_type 0 344 1 21 71 0 0 chr13 93374925 93374967 -26369931 + AT_rich Low_complexity Low_complexity 1 42 0 450 356 23 11 chr13 93375269 93375443 -26369455 - MER5B DNA MER1_type 0 178 3 1886 146 52 19 chr13 93375543 93375906 -26368992 + THE1C LTR MaLR 1 375 0 515 158 0 0 chr13 93376036 93376112 -26368786 + AluJ/FLAM SINE Alu 3 78 -234 373 261 141 50 chr13 93376122 93376363 -26368535 + L2 LINE L2 3042 3304 -9 202 146 24 0 chr13 93376431 93376472 -26368426 + (TA)n Simple_repeat Simple_repeat 2 43 0 596 189 0 0 chr13 93376644 93376755 -26368143 + AluJb SINE Alu 1 111 -201 21 36 0 0 chr13 93377394 93377422 -26367476 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr13 93377438 93377480 -26367418 + AT_rich Low_complexity Low_complexity 1 42 0 2061 119 33 0 chr13 93377843 93378145 -26366753 - AluSq SINE Alu -1 312 1 6225 206 107 45 chr13 93378285 93379936 -26364962 - MER52A LTR ERV1 0 1755 3 2415 46 26 3 chr13 93380277 93380580 -26364318 - AluY SINE Alu -1 310 1 1709 226 31 0 chr13 93382008 93382357 -26362541 - MLT1A1 LTR MaLR -5 360 1 611 285 79 67 chr13 93387156 93387650 -26357248 + L1MEd LINE L1 587 1086 -5033 367 214 24 0 chr13 93388123 93388207 -26356691 - L1MC/D LINE L1 -709 5624 5539 782 245 53 5 chr13 93388212 93388289 -26356609 + L1M2 LINE L1 2775 2847 -4719 216 0 0 0 chr13 93388289 93388313 -26356585 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 782 245 53 5 chr13 93388313 93388572 -26356326 + L1M2 LINE L1 2847 3309 -4257 355 270 57 35 chr13 93388611 93388841 -26356057 - L1M4c LINE L1 -4188 2196 1962 304 188 0 0 chr13 93388845 93388909 -26355989 + L1MA7 LINE L1 6207 6270 -21 * 477 183 0 92 chr13 93388905 93389036 -26355862 + L1MA9 LINE L1 6191 6309 -3 1042 293 32 8 chr13 93389047 93389545 -26355353 - L1MC/D LINE L1 -854 5292 4783 2924 112 32 2 chr13 93389575 93390047 -26354851 - L1PA8 LINE L1 -765 5381 4896 * 4393 68 0 3 chr13 93390020 93390590 -26354308 + L1PA8 LINE L1 5392 5959 -213 873 250 32 29 chr13 93390589 93390869 -26354029 - L1MB7 LINE L1 -116 6068 5788 * 2267 228 20 9 chr13 93390987 93391624 -26353274 - L1MB7 LINE L1 -360 5818 5175 1896 270 87 22 chr13 93391621 93392733 -26352165 - L1MB7 LINE L1 -2694 3452 2269 * 3924 220 31 12 chr13 93392721 93393704 -26351194 - L1MA6 LINE L1 0 6300 5299 5085 157 34 30 chr13 93393706 93395137 -26349761 - L1PA16 LINE L1 -1 6165 4725 597 188 0 29 chr13 93395136 93395274 -26349624 + L1PA16 LINE L1 4576 4709 -1437 * 1440 222 47 8 chr13 93395314 93395674 -26349224 - L1MA6 LINE L1 -862 5284 4911 383 289 102 25 chr13 93395681 93395878 -26349020 - L1MEc LINE L1 -4012 2384 2173 665 269 128 25 chr13 93395884 93396237 -26348661 - L1MEc LINE L1 -4278 2118 1730 296 290 65 8 chr13 93396245 93396369 -26348529 - L1MEc LINE L1 -6234 162 32 181 171 0 0 chr13 93396378 93396413 -26348485 - MIR SINE MIR -91 171 137 37 23 0 0 chr13 93398103 93398147 -26346751 + AT_rich Low_complexity Low_complexity 1 44 0 226 301 155 19 chr13 93398329 93398432 -26346466 - MLT1E LTR MaLR -382 211 95 324 227 0 0 chr13 93399550 93399616 -26345282 + L1MC4 LINE L1 6641 6706 -1336 184 336 26 17 chr13 93399693 93399809 -26345089 + L3b LINE CR1 1268 1384 -199 428 350 113 33 chr13 93400663 93401054 -26343844 - L2 LINE L2 -25 3288 2867 186 265 188 17 chr13 93401310 93401427 -26343471 - MIR SINE MIR -22 240 104 4327 112 11 2 chr13 93401504 93402141 -26342757 + L1PA10 LINE L1 5526 6168 0 201 167 0 0 chr13 93402146 93402182 -26342716 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 297 51 0 0 chr13 93402459 93402498 -26342400 + (CA)n Simple_repeat Simple_repeat 2 40 0 357 340 136 19 chr13 93402872 93403078 -26341820 + MIR SINE MIR 3 232 -30 22 0 0 0 chr13 93403243 93403265 -26341633 + AT_rich Low_complexity Low_complexity 1 22 0 35 41 0 0 chr13 93403296 93403345 -26341553 + AT_rich Low_complexity Low_complexity 1 49 0 757 294 138 18 chr13 93403412 93404500 -26340398 + L1ME LINE L1 4488 5718 -452 207 114 0 0 chr13 93404561 93404596 -26340302 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr13 93404667 93404695 -26340203 + AT_rich Low_complexity Low_complexity 1 28 0 2496 60 0 19 chr13 93404881 93405198 -26339700 - AluY SINE Alu 0 311 1 555 282 49 15 chr13 93405474 93405784 -26339114 + MER110 LTR ERV1 80 474 -17 1679 178 14 3 chr13 93407137 93407423 -26337475 - MSTB LTR MaLR -137 289 1 207 0 0 0 chr13 93408762 93408785 -26336113 + (T)n Simple_repeat Simple_repeat 1 23 0 1639 219 64 16 chr13 93409153 93409592 -26335306 + MLT1C LTR MaLR 8 467 0 23 0 0 0 chr13 93410609 93410632 -26334266 + AT_rich Low_complexity Low_complexity 1 23 0 241 168 61 0 chr13 93411608 93411739 -26333159 + (TA)n Simple_repeat Simple_repeat 2 140 0 782 208 24 24 chr13 93411864 93412032 -26332866 + AluJo SINE Alu 3 170 -142 2317 116 30 25 chr13 93412032 93412394 -26332504 + THE1B LTR MaLR 1 364 0 9652 108 22 94 chr13 93412394 93413412 -26331486 + THE1B-int LTR MaLR 1 1004 -576 1107 103 0 0 chr13 93413412 93413558 -26331340 + AluYa5 SINE Alu 150 295 -16 9652 108 22 94 chr13 93413558 93414097 -26330801 + THE1B-int LTR MaLR 1004 1580 0 848 217 0 0 chr13 93414699 93414860 -26330038 + AluJb SINE Alu 137 297 -15 1128 231 107 39 chr13 93415888 93416414 -26328484 - MER67C LTR ERV1 0 514 1 294 335 6 81 chr13 93416760 93416933 -26327965 - ERVL LTR ERVL -4344 1420 1261 1066 201 109 3 chr13 93416947 93417230 -26327668 - MER33 DNA MER1_type -11 313 1 245 325 95 62 chr13 93418506 93418749 -26326149 - MIR SINE MIR -11 251 1 279 0 0 0 chr13 93419129 93419160 -26325738 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 289 82 0 20 chr13 93419162 93419211 -26325687 - Alu SINE Alu -15 287 240 976 76 0 0 chr13 93419220 93419338 -26325560 - AluY SINE Alu -193 118 1 1685 15 0 15 chr13 93419378 93419583 -26325315 - L1PA4 LINE L1 -8 6147 5946 941 274 86 22 chr13 93419588 93420047 -26324851 - L1ME3A LINE L1 -14 6156 5658 356 183 24 0 chr13 93420363 93420445 -26324453 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 238 293 103 0 chr13 93420447 93420563 -26324335 - L1ME3A LINE L1 -874 5272 5145 2150 173 51 7 chr13 93421447 93421857 -26323041 + MSTC LTR MaLR 1 428 0 2199 103 17 0 chr13 93422230 93422530 -26322368 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr13 93423014 93423037 -26321861 + AT_rich Low_complexity Low_complexity 1 23 0 1582 262 64 5 chr13 93423270 93423709 -26321189 + MLT1E2 LTR MaLR 155 619 -7 588 243 61 15 chr13 93423712 93423952 -26320946 + MLT1E2-int LTR MaLR 1 371 -1000 431 116 48 89 chr13 93423962 93424108 -26320790 - MER30 DNA MER1_type -62 168 29 597 223 27 20 chr13 93424482 93424630 -26320268 + MLT1E2-int LTR MaLR 447 595 -776 1853 128 60 41 chr13 93424982 93425348 -26319550 + THE1C LTR MaLR 3 375 0 25 0 0 0 chr13 93425638 93425663 -26319235 + AT_rich Low_complexity Low_complexity 1 25 0 570 236 85 99 chr13 93425925 93426327 -26318571 + MSTD LTR MaLR 1 396 0 440 48 0 0 chr13 93426336 93426399 -26318499 + AluY SINE Alu 247 309 -1 183 354 15 0 chr13 93426507 93426572 -26318326 - L2 LINE L2 -541 2773 2708 718 308 52 80 chr13 93426573 93427034 -26317864 + MLT1F1 LTR MaLR 104 551 -16 29 0 0 0 chr13 93427299 93427328 -26317570 + AT_rich Low_complexity Low_complexity 1 29 0 897 208 109 14 chr13 93427660 93427944 -26316954 - MER33 DNA MER1_type -13 311 1 231 88 0 0 chr13 93428671 93428705 -26316193 + (TG)n Simple_repeat Simple_repeat 2 35 0 313 291 80 33 chr13 93429200 93429413 -26315485 - L1MC4a LINE L1 -157 5964 5740 284 83 21 0 chr13 93429862 93429910 -26314988 + (CA)n Simple_repeat Simple_repeat 2 50 0 2182 99 0 0 chr13 93430013 93430325 -26314573 + AluSc SINE Alu 1 312 0 22 0 0 0 chr13 93430860 93430882 -26314016 + AT_rich Low_complexity Low_complexity 1 22 0 3594 219 21 47 chr13 93431705 93432976 -26311922 + L1MC2 LINE L1 4987 6223 -121 253 119 0 48 chr13 93432976 93433018 -26311880 + Alu SINE Alu 1 40 -260 27 0 0 0 chr13 93433608 93433635 -26311263 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr13 93434338 93434362 -26310536 + AT_rich Low_complexity Low_complexity 1 24 0 1555 100 0 48 chr13 93435056 93435285 -26309613 - AluSg/x SINE Alu -24 288 71 1572 96 13 4 chr13 93435285 93435524 -26309374 + L1P LINE L1 5046 5286 -860 1795 77 2 55 chr13 93435626 93435984 -26308914 + L1P3 LINE L1 5172 5516 -638 774 255 61 54 chr13 93435999 93436327 -26308571 - LTR9B LTR ERV1 -264 380 1 764 161 40 20 chr13 93436327 93436472 -26308426 + MSTB1 LTR MaLR 285 432 0 23 78 0 0 chr13 93437017 93437068 -26307830 + AT_rich Low_complexity Low_complexity 1 51 0 615 362 128 18 chr13 93437264 93438570 -26306328 + L2 LINE L2 1730 3190 -123 186 43 0 0 chr13 93438841 93438864 -26306034 + (GA)n Simple_repeat Simple_repeat 1 23 0 628 221 23 0 chr13 93439548 93439679 -26305219 - AluJb SINE Alu -16 296 163 699 252 78 72 chr13 93439735 93440080 -26304818 + L1ME2 LINE L1 5783 6129 -35 408 275 45 60 chr13 93440241 93440510 -26304388 + L1MB8 LINE L1 5587 5851 -327 23 33 0 0 chr13 93442965 93442995 -26301903 + AT_rich Low_complexity Low_complexity 1 30 0 947 133 53 0 chr13 93444392 93444543 -26300355 + FRAM SINE Alu 1 156 -20 2707 172 14 14 chr13 93446804 93447286 -26297612 + LTR45B LTR ERV1 8 489 0 208 111 56 0 chr13 93447823 93447859 -26297039 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 261 241 89 36 chr13 93448277 93448389 -26296509 + L1MC4a LINE L1 6880 6997 -811 2001 118 7 0 chr13 93448393 93448673 -26296225 - AluSc SINE Alu -16 293 12 1000 272 52 62 chr13 93448685 93448814 -26296084 + L1MC4a LINE L1 7137 7266 -542 2077 120 3 7 chr13 93448814 93449106 -26295792 + AluSc SINE Alu 1 291 -18 294 29 0 0 chr13 93449111 93449146 -26295752 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1000 272 52 62 chr13 93449146 93449524 -26295374 + L1MC4a LINE L1 7270 7645 -163 1164 160 15 10 chr13 93449525 93449731 -26295167 + MER2 DNA MER2_type 2 208 -137 206 200 15 31 chr13 93449749 93449814 -26295084 + (TATTG)n Simple_repeat Simple_repeat 2 65 0 234 217 12 24 chr13 93449864 93449947 -26294951 + L1MC4a LINE L1 7640 7721 -87 22 70 0 0 chr13 93449993 93450036 -26294862 + AT_rich Low_complexity Low_complexity 1 43 0 732 230 5 39 chr13 93450093 93450297 -26294601 - MER3 DNA MER1_type -12 197 1 263 158 0 18 chr13 93451588 93451645 -26293253 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 25 0 0 0 chr13 93451871 93451896 -26293002 + AT_rich Low_complexity Low_complexity 1 25 0 316 221 0 96 chr13 93452875 93452979 -26291919 - MIR SINE MIR -57 205 112 1067 187 5 5 chr13 93453619 93453806 -26291092 - AluSx SINE Alu -125 187 1 1648 145 7 21 chr13 93454152 93454434 -26290464 + AluY SINE Alu 1 278 -33 180 0 0 0 chr13 93454434 93454454 -26290444 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1581 89 0 9 chr13 93455073 93455287 -26289611 - AluSq SINE Alu -11 302 91 295 77 0 0 chr13 93455287 93455326 -26289572 + Alu SINE Alu 19 57 -251 723 190 8 0 chr13 93455334 93455455 -26289443 - FRAM SINE Alu -25 151 30 1182 133 10 46 chr13 93455455 93455650 -26289248 - THE1B LTR MaLR 0 364 177 789 290 114 43 chr13 93505867 93506058 -26238840 - L1MEc LINE L1 -4091 2305 2129 1847 127 3 14 chr13 93506058 93506349 -26238549 - AluSc SINE Alu -21 288 1 789 290 114 43 chr13 93506349 93507167 -26237731 - L1MEc LINE L1 -4267 2129 1224 4079 261 75 34 chr13 93507188 93509295 -26235603 - L1M4 LINE L1 -486 5692 3505 2130 127 7 0 chr13 93509557 93509864 -26235034 - AluSp SINE Alu -4 309 1 264 254 0 0 chr13 93510033 93510092 -26234806 + (TA)n Simple_repeat Simple_repeat 2 60 0 29 28 0 0 chr13 93510108 93510144 -26234754 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr13 93511212 93511248 -26233650 + AT_rich Low_complexity Low_complexity 1 36 0 290 360 0 0 chr13 93511337 93511423 -26233475 + MER69 DNA AcHobo 20 105 -2421 1070 225 45 73 chr13 93511446 93511802 -26233096 + MLT1A2 LTR MaLR 24 369 -5 1633 306 52 24 chr13 93511810 93512517 -26232381 + MER69 DNA AcHobo 107 833 -393 1868 245 55 35 chr13 93512538 93513223 -26231675 + MER69 DNA AcHobo 1828 2526 0 25 51 0 0 chr13 93513567 93513606 -26231292 + AT_rich Low_complexity Low_complexity 1 39 0 841 147 31 18 chr13 93513728 93513891 -26231007 - L1MA10 LINE L1 -7 6327 6163 4086 199 20 19 chr13 93513911 93515230 -26229668 - L1MB1 LINE L1 -3 6186 4776 411 38 0 0 chr13 93515230 93515283 -26229615 + (TG)n Simple_repeat Simple_repeat 2 54 0 4086 199 20 19 chr13 93515283 93515375 -26229523 - L1MB1 LINE L1 -1413 4776 4686 32 0 0 0 chr13 93516747 93516779 -26228119 + AT_rich Low_complexity Low_complexity 1 32 0 791 237 0 23 chr13 93517266 93517439 -26227459 - FRAM SINE Alu -6 170 2 246 105 0 0 chr13 93517443 93517481 -26227417 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 831 191 7 0 chr13 93517481 93517617 -26227281 - FRAM SINE Alu -29 147 11 759 242 4 75 chr13 93517627 93517854 -26227044 - AluSx SINE Alu -101 211 1 332 65 43 32 chr13 93518240 93518333 -26226565 + (TA)n Simple_repeat Simple_repeat 1 94 0 407 76 59 25 chr13 93518508 93518627 -26226271 + (TA)n Simple_repeat Simple_repeat 1 123 0 288 339 11 37 chr13 93518863 93519052 -26225846 - MIR SINE MIR 0 262 79 182 286 0 78 chr13 93522350 93522427 -26222471 + MIR SINE MIR 24 94 -168 1195 334 24 7 chr13 93523975 93524397 -26220501 + LTR16C LTR ERVL 50 478 -13 1137 194 40 32 chr13 93524794 93525042 -26219856 - AluJo SINE Alu -58 254 5 221 176 0 20 chr13 93525514 93525565 -26219333 + CT-rich Low_complexity Low_complexity 4 53 0 218 103 0 26 chr13 93525999 93526038 -26218860 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 810 140 122 6 chr13 93526040 93526204 -26218694 - AluJo SINE Alu -7 305 123 1715 142 74 15 chr13 93526862 93527186 -26217712 + MER61A LTR ERV1 1 343 0 632 304 88 23 chr13 93527193 93527499 -26217399 - LTR16C LTR ERVL -4 487 162 249 335 95 19 chr13 93527745 93527903 -26216995 + L2 LINE L2 2449 2618 -696 194 296 112 60 chr13 93528225 93528458 -26216440 + L2 LINE L2 2809 3053 -219 968 332 132 37 chr13 93528706 93529221 -26215677 + L2 LINE L2 1021 1627 -1687 3219 182 47 14 chr13 93529221 93529909 -26214989 - MER67C LTR ERV1 0 710 1 968 332 132 37 chr13 93529909 93530122 -26214776 + L2 LINE L2 1627 1818 -1496 328 164 30 0 chr13 93530125 93530192 -26214706 + LTR24B LTR ERV1 9 77 -499 1622 166 46 0 chr13 93530272 93530555 -26214343 + AluJb SINE Alu 11 306 -6 2161 184 87 55 chr13 93530557 93531123 -26213775 + LTR34 LTR ERV1 107 690 -9 1451 294 91 29 chr13 93531143 93531735 -26213163 + L2 LINE L2 1833 2461 -853 573 333 55 21 chr13 93531733 93531970 -26212928 + L2 LINE L2 3069 3313 0 * 2326 149 16 0 chr13 93532074 93532443 -26212455 + THE1C LTR MaLR 1 375 0 27 29 0 0 chr13 93533229 93533263 -26211635 + AT_rich Low_complexity Low_complexity 1 34 0 32 0 0 0 chr13 93534573 93534605 -26210293 + AT_rich Low_complexity Low_complexity 1 32 0 1929 146 138 21 chr13 93534682 93535065 -26209833 - MSTA LTR MaLR 0 428 1 248 188 16 0 chr13 93536432 93536496 -26208402 + (TA)n Simple_repeat Simple_repeat 1 65 0 24 0 0 0 chr13 93536973 93536997 -26207901 + AT_rich Low_complexity Low_complexity 1 24 0 668 176 14 0 chr13 93537001 93537143 -26207755 - L1MA4A LINE L1 -1 6302 6159 3994 99 2 0 chr13 93537275 93537828 -26207070 - MER41A LTR ERV1 0 554 1 2111 121 0 16 chr13 93538160 93538474 -26206424 + AluSc SINE Alu 1 309 0 1422 201 93 44 chr13 93538632 93538660 -26206238 + MLT1A1 LTR MaLR 1 26 -339 201 39 0 0 chr13 93538660 93538686 -26206212 + (CCCCAA)n Simple_repeat Simple_repeat 5 30 0 1422 201 93 44 chr13 93538686 93538812 -26206086 + MLT1A1 LTR MaLR 26 144 -221 4367 168 62 25 chr13 93538812 93539683 -26205215 + MER4D LTR ERV1 1 903 0 1422 201 93 44 chr13 93539683 93539871 -26205027 + MLT1A1 LTR MaLR 144 361 -4 309 368 99 6 chr13 93541328 93541510 -26203388 + HAL1b LINE L1 401 599 -749 21 36 0 0 chr13 93542044 93542072 -26202826 + AT_rich Low_complexity Low_complexity 1 28 0 1899 241 42 20 chr13 93542885 93543379 -26201519 - MLT1D LTR MaLR 0 505 1 346 326 108 56 chr13 93543390 93543843 -26201055 + L2 LINE L2 1466 1974 -1340 2493 59 0 3 chr13 93543843 93544147 -26200751 + AluY SINE Alu 1 303 -8 346 326 108 56 chr13 93544147 93544430 -26200468 + L2 LINE L2 1974 2241 -1073 422 310 133 58 chr13 93544514 93544918 -26199980 + L2 LINE L2 2554 2926 -387 957 265 21 53 chr13 93544918 93545243 -26199655 + MLT1A1 LTR MaLR 1 335 -30 1948 98 0 0 chr13 93545243 93545488 -26199410 + AluSq SINE Alu 38 282 -31 277 60 0 40 chr13 93545491 93545541 -26199357 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 957 265 21 53 chr13 93545541 93545588 -26199310 + MLT1A1 LTR MaLR 337 365 0 422 310 133 58 chr13 93545588 93545624 -26199274 + L2 LINE L2 2926 3009 -304 332 355 6 18 chr13 93545787 93545956 -26198942 + MIR SINE MIR 54 220 -42 637 267 34 34 chr13 93547698 93547904 -26196994 + MLT1D LTR MaLR 3 208 -297 1009 217 91 4 chr13 93548027 93548257 -26196641 + MLT1D LTR MaLR 255 504 -1 782 175 39 19 chr13 93548369 93548523 -26196375 + MLT1A1 LTR MaLR 1 157 -208 1084 214 12 93 chr13 93548525 93548848 -26196050 + AluJo SINE Alu 2 298 -4 237 281 12 0 chr13 93550115 93550197 -26194701 + MLT1L LTR MaLR 511 593 -22 201 175 0 0 chr13 93550328 93550368 -26194530 + (TA)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr13 93550654 93550678 -26194220 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 93550859 93550880 -26194018 + AT_rich Low_complexity Low_complexity 1 21 0 2227 123 3 0 chr13 93550926 93551228 -26193670 - AluSx SINE Alu -9 303 1 279 0 0 0 chr13 93551601 93551632 -26193266 + (T)n Simple_repeat Simple_repeat 1 31 0 322 294 137 7 chr13 93552130 93552276 -26192622 - MIR SINE MIR 0 262 98 504 260 64 35 chr13 93553861 93554034 -26190864 - L2 LINE L2 0 3313 3136 1624 86 5 0 chr13 93554037 93554246 -26190652 + AluSc SINE Alu 1 210 -99 418 323 91 42 chr13 93554674 93554981 -26189917 + L2 LINE L2 2175 2496 -818 388 202 11 38 chr13 93555091 93555274 -26189624 + (TA)n Simple_repeat Simple_repeat 2 179 0 195 42 0 0 chr13 93555510 93555534 -26189364 + (CA)n Simple_repeat Simple_repeat 1 24 0 408 182 82 100 chr13 93555555 93555665 -26189233 - L1MA9 LINE L1 -29 6270 6155 796 186 8 173 chr13 93555716 93555989 -26188909 - L1MA9 LINE L1 -159 6153 5959 2184 212 13 4 chr13 93555989 93556446 -26188452 + MER65C LTR ERV1 1 461 0 796 186 8 173 chr13 93556446 93556553 -26188345 - L1MA9 LINE L1 -353 5959 5836 496 156 0 0 chr13 93556875 93556971 -26187927 + L1MA4A LINE L1 6206 6301 -2 200 343 0 14 chr13 93557186 93557256 -26187642 + L2 LINE L2 3172 3240 -32 380 172 0 0 chr13 93557256 93557320 -26187578 - LOR1a LTR ERV1 0 497 434 1126 122 10 36 chr13 93557320 93557516 -26187382 + AluSc SINE Alu 1 191 -118 476 191 35 9 chr13 93557616 93557731 -26187167 + AluSc SINE Alu 183 300 -9 1660 181 111 11 chr13 93557731 93558101 -26186797 - LOR1b LTR ERV1 -54 407 1 23 0 0 0 chr13 93559030 93559053 -26185845 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 93559794 93559824 -26185074 + AT_rich Low_complexity Low_complexity 1 30 0 4183 142 26 71 chr13 93560010 93561453 -26183445 - pTR5 LTR ERV1 0 2606 1524 244 344 0 11 chr13 93561611 93561704 -26183194 + L2 LINE L2 2722 2813 -501 542 214 0 0 chr13 93561704 93561816 -26183082 + MLT2C1 LTR ERVL 1 112 -285 209 216 0 0 chr13 93561830 93561867 -26183031 + (CATA)n Simple_repeat Simple_repeat 3 39 0 326 104 21 0 chr13 93561907 93561955 -26182943 + MLT2C1 LTR ERVL 349 397 0 28 29 0 0 chr13 93563508 93563543 -26181355 + AT_rich Low_complexity Low_complexity 1 35 0 214 205 0 0 chr13 93563576 93563615 -26181283 + (TA)n Simple_repeat Simple_repeat 1 39 0 2265 58 0 14 chr13 93564090 93564383 -26180515 - AluY SINE Alu -22 289 1 2176 81 0 3 chr13 93565535 93565818 -26179080 + AluY SINE Alu 24 305 -6 516 309 134 32 chr13 93565851 93566194 -26178704 - LTR16A1 LTR ERVL -76 381 4 491 349 56 52 chr13 93566376 93566952 -26177946 - HERV16 LTR ERVL -480 5284 4707 1925 184 69 20 chr13 93566966 93567374 -26177524 + MSTA LTR MaLR 1 428 0 1485 118 0 0 chr13 93567381 93567585 -26177313 - AluSc SINE Alu -11 298 95 3158 150 64 9 chr13 93567616 93568252 -26176646 + L1MA5 LINE L1 5609 6283 -17 488 303 62 38 chr13 93568285 93568655 -26176243 + L1PA8 LINE L1 5447 5825 -347 * 2967 203 31 11 chr13 93568324 93568975 -26175923 + L1MB3 LINE L1 5484 6147 -36 370 316 76 24 chr13 93569746 93570126 -26174772 - HERV16 LTR ERVL -1956 3698 3299 2031 326 53 60 chr13 93570134 93571648 -26173250 - HERV16 LTR ERVL -1900 3096 1752 240 35 0 0 chr13 93572282 93572311 -26172587 + (A)n Simple_repeat Simple_repeat 1 29 0 4286 164 33 44 chr13 93573057 93573970 -26170928 + MER4D LTR ERV1 1 903 0 22 70 0 0 chr13 93574213 93574256 -26170642 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 93574381 93574409 -26170489 + AT_rich Low_complexity Low_complexity 1 28 0 359 274 0 11 chr13 93574663 93574758 -26170140 + MER92A LTR ERV1 28 121 -291 2672 280 81 30 chr13 93574895 93575878 -26169020 - L1M4b LINE L1 -5738 1121 102 1127 262 23 42 chr13 93575923 93576350 -26168548 + MER31-int LTR ERV1 2648 3066 -1870 203 184 0 0 chr13 93576537 93576575 -26168323 + T-rich Low_complexity Low_complexity 1 38 0 686 95 148 89 chr13 93576576 93576711 -26168187 - L1PB1 LINE L1 -44 6107 5959 2240 73 3 13 chr13 93576711 93577011 -26167887 - AluY SINE Alu -14 297 1 686 95 148 89 chr13 93577011 93577044 -26167854 - L1PB1 LINE L1 -192 5959 5929 970 23 0 76 chr13 93577048 93577220 -26167678 - SVA Other Other -1226 160 2 621 66 0 0 chr13 93577225 93577316 -26167582 + (GGGAGA)n Simple_repeat Simple_repeat 1 91 0 1626 249 2 5 chr13 93577358 93577775 -26167123 - L1 LINE L1 -2441 3705 3290 23 0 0 0 chr13 93577974 93577997 -26166901 + AT_rich Low_complexity Low_complexity 1 23 0 293 289 44 0 chr13 93578129 93578219 -26166679 + MER31-int LTR ERV1 3175 3268 -1668 254 246 15 0 chr13 93578429 93578494 -26166404 + MER44D DNA MER2_type 1 66 -639 2008 201 24 48 chr13 93578632 93579094 -26165804 + MER44D DNA MER2_type 99 604 -1 2237 264 56 74 chr13 93579095 93580147 -26164751 + MER31-int LTR ERV1 3438 4470 -466 27 0 0 0 chr13 93580670 93580697 -26164201 + AT_rich Low_complexity Low_complexity 1 27 0 573 300 31 22 chr13 93580916 93581143 -26163755 + MER92A LTR ERV1 1 229 -183 671 162 192 48 chr13 93581186 93581353 -26163545 + MER92A LTR ERV1 263 405 -7 249 314 68 42 chr13 93581463 93581699 -26163199 - L1MEd LINE L1 -5779 340 99 24 53 0 0 chr13 93581979 93582017 -26162881 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 93582281 93582302 -26162596 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr13 93582589 93582624 -26162274 + AT_rich Low_complexity Low_complexity 1 35 0 2217 70 0 3 chr13 93582700 93583012 -26161886 + AluY SINE Alu 1 311 0 37 90 0 0 chr13 93583951 93584051 -26160847 + AT_rich Low_complexity Low_complexity 1 100 0 1741 158 49 27 chr13 93584199 93584566 -26160332 + THE1C LTR MaLR 1 375 0 298 303 0 40 chr13 93584748 93584847 -26160051 + MIR3 SINE MIR 88 182 -26 468 0 0 0 chr13 93585744 93585796 -26159102 + (TA)n Simple_repeat Simple_repeat 2 53 0 346 385 19 14 chr13 93586170 93586383 -26158515 - HERV16 LTR ERVL -3507 1489 1276 1866 149 3 13 chr13 93586483 93586785 -26158113 + AluSx SINE Alu 1 299 -13 534 317 40 5 chr13 93586850 93587052 -26157846 - HERV16 LTR ERVL -3840 1156 948 556 293 131 11 chr13 93587080 93587271 -26157627 - HERV16 LTR ERVL -4092 904 691 447 323 0 6 chr13 93587811 93587975 -26156923 - LTR16A1 LTR ERVL 0 457 295 736 193 0 0 chr13 93588658 93588777 -26156121 - MER20 DNA MER1_type 0 219 101 1130 221 58 18 chr13 93591556 93591832 -26153066 - LTR26E LTR ERV1 -206 416 130 1870 60 7 60 chr13 93591840 93592125 -26152773 - L1PA6 LINE L1 -122 6032 5763 946 317 53 12 chr13 93592322 93593001 -26151897 - L1MCc LINE L1 -1444 5497 4791 708 186 12 17 chr13 93592987 93593159 -26151739 - L1MC3 LINE L1 -8 7777 7607 * 279 282 169 41 chr13 93593162 93593677 -26151221 - L1MCc LINE L1 -2464 4477 3897 227 274 75 0 chr13 93593683 93593789 -26151109 - L1MCc LINE L1 -4846 2095 1982 788 287 72 49 chr13 93593815 93594512 -26150386 - L1MCc LINE L1 -4887 1536 857 2003 141 3 13 chr13 93594512 93594824 -26150074 - AluSg SINE Alu -1 309 1 788 287 72 49 chr13 93594824 93594930 -26149968 - L1MCc LINE L1 -5566 857 755 444 19 0 0 chr13 93594930 93594983 -26149915 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 2127 106 3 0 chr13 93594991 93595273 -26149625 - AluSp SINE Alu -30 283 1 788 287 72 49 chr13 93595273 93595446 -26149452 - L1MCc LINE L1 -5320 1103 936 249 326 37 15 chr13 93595437 93595572 -26149326 + L1MCc LINE L1 798 935 -5488 * 1901 115 52 3 chr13 93595642 93595928 -26148970 - AluSp SINE Alu -13 300 1 2194 178 35 0 chr13 93596319 93596718 -26148180 + LOR1b LTR ERV1 49 461 0 18593 130 38 48 chr13 93596718 93597156 -26147742 + LOR1b-int LTR ERV1 1 442 -7678 195 42 0 0 chr13 93597156 93597180 -26147718 + (TG)n Simple_repeat Simple_repeat 1 24 0 18593 130 38 48 chr13 93597180 93599526 -26145372 + LOR1b-int LTR ERV1 442 2810 -5310 180 0 0 0 chr13 93599526 93599546 -26145352 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2049 112 0 0 chr13 93599548 93599824 -26145074 - AluSc SINE Alu -33 276 1 18593 130 38 48 chr13 93599824 93600640 -26144258 + LOR1b-int LTR ERV1 2811 3568 -4552 2102 193 137 145 chr13 93600822 93601821 -26143077 - LTR28 LTR ERV1 -29 991 1 11651 119 40 9 chr13 93601821 93603721 -26141177 + LOR1b-int LTR ERV1 3564 5523 -2597 1413 89 47 5 chr13 93603702 93603915 -26140983 + LOR1b-int LTR ERV1 5782 6003 -2117 * 565 143 11 0 chr13 93603935 93604026 -26140872 + LOR1b-int LTR ERV1 8029 8120 0 1927 212 55 5 chr13 93604026 93604465 -26140433 + LOR1b LTR ERV1 1 461 0 27 0 0 0 chr13 93604550 93604577 -26140321 + AT_rich Low_complexity Low_complexity 1 27 0 1969 190 26 34 chr13 93604703 93605255 -26139643 - MLT2A2 LTR ERVL -9 545 1 258 266 19 52 chr13 93605925 93606079 -26138819 + L1MC4 LINE L1 7118 7266 -776 234 236 18 0 chr13 93606530 93606585 -26138313 + (TA)n Simple_repeat Simple_repeat 1 56 0 213 175 0 0 chr13 93606729 93606769 -26138129 + (TG)n Simple_repeat Simple_repeat 2 41 0 1332 277 83 37 chr13 93606816 93606894 -26138004 - L1ME LINE L1 -5001 1079 1006 222 105 0 0 chr13 93606894 93606932 -26137966 + (TG)n Simple_repeat Simple_repeat 1 38 0 1332 277 83 37 chr13 93606932 93607732 -26137166 - L1ME LINE L1 -5074 1006 155 193 352 14 0 chr13 93608147 93608218 -26136680 + L2 LINE L2 3200 3271 -1 386 138 46 64 chr13 93609313 93609422 -26135476 + L1MA4 LINE L1 6194 6300 0 2165 64 50 0 chr13 93609447 93609730 -26135168 - AluY SINE Alu -14 297 1 36 77 0 0 chr13 93609777 93609855 -26135043 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr13 93609969 93609991 -26134907 + AT_rich Low_complexity Low_complexity 1 22 0 4190 149 13 13 chr13 93610733 93611443 -26133455 - LTR62 LTR ERVK -2 717 8 21 89 0 0 chr13 93612178 93612234 -26132664 + AT_rich Low_complexity Low_complexity 1 56 0 340 224 40 80 chr13 93613557 93613682 -26131216 + L2 LINE L2 3184 3303 -10 1445 232 114 39 chr13 93613689 93614130 -26130768 + MLT2B1 LTR ERVL 1 482 -38 234 0 0 0 chr13 93614130 93614156 -26130742 + (CA)n Simple_repeat Simple_repeat 2 27 0 1445 232 114 39 chr13 93614156 93614196 -26130702 + MLT2B1 LTR ERVL 482 518 -2 953 263 50 11 chr13 93614376 93614654 -26130244 - MER41E LTR ERV1 -21 491 203 315 80 40 0 chr13 93614958 93615008 -26129890 + MLT1D LTR MaLR 440 491 -14 280 346 90 13 chr13 93615029 93615185 -26129713 + L2 LINE L2 2048 2215 -1099 1197 238 26 102 chr13 93615186 93615686 -26129212 + MLT1C LTR MaLR 1 462 -5 23 0 0 0 chr13 93616239 93616262 -26128636 + AT_rich Low_complexity Low_complexity 1 23 0 2068 113 13 33 chr13 93617275 93617434 -26127464 - AluSx SINE Alu -17 295 143 2252 85 41 0 chr13 93617434 93617729 -26127169 - AluY SINE Alu 0 311 5 1127 80 0 0 chr13 93617733 93617870 -26127028 - AluSq/x SINE Alu -176 137 1 185 373 144 0 chr13 93617949 93618067 -26126831 + L2 LINE L2 3137 3271 -1 342 0 0 0 chr13 93618360 93618398 -26126500 + (TA)n Simple_repeat Simple_repeat 1 38 0 929 264 72 20 chr13 93619055 93619621 -26125277 - L1MEc LINE L1 -2988 3227 2476 565 240 48 58 chr13 93619677 93619990 -26124908 - L1MEc LINE L1 -4104 2292 1983 2378 72 3 3 chr13 93620858 93621163 -26123735 + AluSc SINE Alu 5 309 0 819 154 26 0 chr13 93621328 93621555 -26123343 + CT-rich Low_complexity Low_complexity 1 233 0 928 220 86 52 chr13 93621563 93621854 -26123044 - AluJb SINE Alu -1 301 1 25 65 0 0 chr13 93622214 93622260 -26122638 + AT_rich Low_complexity Low_complexity 1 46 0 2220 96 3 3 chr13 93622660 93622962 -26121936 - AluSc SINE Alu -7 302 1 225 115 16 49 chr13 93623348 93623409 -26121489 + (TAA)n Simple_repeat Simple_repeat 1 59 0 1314 225 54 14 chr13 93623890 93624241 -26120657 + MLT1A1 LTR MaLR 1 365 0 239 54 27 0 chr13 93624828 93624865 -26120033 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 473 271 53 0 chr13 93625756 93625907 -26118991 - MLT2C1 LTR ERVL -167 230 72 21 0 0 0 chr13 93626241 93626262 -26118636 + AT_rich Low_complexity Low_complexity 1 21 0 226 317 12 0 chr13 93627234 93627316 -26117582 + LTR50 LTR ERVL 1 83 -712 1251 269 111 54 chr13 93629341 93629429 -26115469 - L1MC4a LINE L1 -95 7713 7631 1535 161 63 11 chr13 93629429 93629714 -26115184 + AluJo SINE Alu 1 300 -12 1251 269 111 54 chr13 93629714 93630627 -26114271 - L1MC4a LINE L1 -177 7631 6613 1705 205 0 0 chr13 93631533 93631835 -26113063 - AluJo SINE Alu -10 302 1 1919 197 109 4 chr13 93632475 93632932 -26111966 + L1MB7 LINE L1 5660 6164 -20 3101 189 33 16 chr13 93634561 93635171 -26109727 - LTR26E LTR ERV1 -2 620 1 3739 164 86 57 chr13 93635530 93636369 -26108529 - MER4D LTR ERV1 0 903 41 2378 163 93 87 chr13 93636369 93636446 -26108452 - LTR8A LTR ERV1 0 727 652 3002 144 96 14 chr13 93636446 93637010 -26107888 + MER4B LTR ERV1 1 610 0 2378 163 93 87 chr13 93637010 93637655 -26107243 - LTR8A LTR ERV1 -75 652 1 258 179 18 18 chr13 93637655 93637698 -26107200 - MER4D LTR ERV1 -860 43 1 277 255 0 75 chr13 93637993 93638087 -26106811 - MIR3 SINE MIR -113 95 9 502 188 21 10 chr13 93638150 93638246 -26106652 + MER4A LTR ERV1 1 97 -567 1440 188 3 74 chr13 93638247 93638619 -26106279 + MER4A LTR ERV1 261 664 0 2079 133 0 0 chr13 93639883 93640192 -26104706 + AluSx SINE Alu 1 309 -3 209 189 38 0 chr13 93641870 93641923 -26102975 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 376 354 46 31 chr13 93642038 93642428 -26102470 + L1M4 LINE L1 2202 2597 -3549 221 174 0 22 chr13 93642449 93642499 -26102399 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 233 255 85 21 chr13 93642762 93642856 -26102042 - MLT1I LTR MaLR -2 407 308 405 0 0 0 chr13 93644367 93644412 -26100486 + (CA)n Simple_repeat Simple_repeat 2 46 0 206 278 56 83 chr13 93644704 93644812 -26100086 + MIR3 SINE MIR 99 203 -5 194 250 31 0 chr13 93645438 93645502 -26099396 - L2 LINE L2 -101 3212 3147 1486 169 15 0 chr13 93645511 93645771 -26099127 - L1M3 LINE L1 -593 5741 5478 272 306 139 29 chr13 93647199 93647372 -26097526 - LTR16A LTR ERVL 0 450 259 357 121 17 0 chr13 93647612 93647670 -26097228 - MER73 LTR ERVL 0 644 586 1399 244 84 62 chr13 93647670 93648867 -26096031 - L1M4 LINE L1 -3142 3502 2281 4602 246 41 53 chr13 93649016 93650843 -26094055 - L1M4 LINE L1 -4822 1824 18 24 67 0 0 chr13 93651149 93651194 -26093704 + AT_rich Low_complexity Low_complexity 1 45 0 2177 107 3 3 chr13 93651282 93651580 -26093318 - AluSx SINE Alu -14 298 1 23 0 0 0 chr13 93651758 93651781 -26093117 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 93651861 93651888 -26093010 + (TA)n Simple_repeat Simple_repeat 1 27 0 2480 34 0 43 chr13 93651888 93652210 -26092688 - AluY SINE Alu -3 308 1 271 253 104 83 chr13 93653351 93653726 -26091172 - L1MC5 LINE L1 -30 7931 7549 579 69 0 0 chr13 93653787 93653859 -26091039 + AluSq/x SINE Alu 60 131 -181 27 0 0 0 chr13 93654762 93654789 -26090109 + AT_rich Low_complexity Low_complexity 1 27 0 2336 49 39 29 chr13 93655862 93656170 -26088728 + AluY SINE Alu 1 311 0 468 0 0 0 chr13 93656180 93656232 -26088666 + (TA)n Simple_repeat Simple_repeat 2 53 0 2596 286 67 25 chr13 93656376 93657109 -26087789 - L1MC4a LINE L1 -6 7802 7003 7241 49 0 32 chr13 93657109 93658474 -26086424 - L1PA5 LINE L1 -1 6153 4808 2596 286 67 25 chr13 93658474 93658867 -26086031 - L1MC4a LINE L1 -805 7003 6628 269 279 0 0 chr13 93658868 93658936 -26085962 + MLT1D LTR MaLR 386 453 -52 374 178 0 23 chr13 93658963 93659060 -26085838 + MLT1D LTR MaLR 429 498 -7 1752 258 104 15 chr13 93659086 93659768 -26085130 - L1ME1 LINE L1 -153 6013 5271 180 0 0 0 chr13 93659843 93659863 -26085035 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 641 289 31 0 chr13 93659863 93660057 -26084841 - L1PA16 LINE L1 -26 6140 5941 1148 171 12 44 chr13 93660163 93660415 -26084483 + L1PA16 LINE L1 5922 6165 -1 21 0 0 0 chr13 93660458 93660479 -26084419 + AT_rich Low_complexity Low_complexity 1 21 0 372 266 32 32 chr13 93660518 93660672 -26084226 - L1ME1 LINE L1 -1251 4895 4742 2457 133 3 8 chr13 93660757 93661133 -26083765 + THE1C LTR MaLR 2 375 0 9593 139 18 30 chr13 93661134 93662733 -26082165 + THE1C-int LTR MaLR 2 1580 0 2395 115 19 13 chr13 93662733 93663106 -26081792 + THE1C LTR MaLR 1 375 0 271 328 23 38 chr13 93663152 93663283 -26081615 - L1M3d LINE L1 -5501 390 262 648 321 94 46 chr13 93663370 93663655 -26081243 - L1M3d LINE L1 -5498 393 84 2047 144 0 0 chr13 93663655 93663946 -26080952 + AluSx SINE Alu 1 291 -21 648 321 94 46 chr13 93663946 93664031 -26080867 - L1M3d LINE L1 -5807 84 5 723 253 53 35 chr13 93664032 93664407 -26080491 + L1M4 LINE L1 4315 4696 -1450 2001 132 44 0 chr13 93664418 93664713 -26080185 + AluSx SINE Alu 5 312 0 4354 228 20 14 chr13 93664780 93666504 -26078394 + L1MB1 LINE L1 4281 6023 -145 1279 208 43 86 chr13 93666506 93667079 -26077819 + MER52A LTR ERV1 660 1344 -411 1911 194 75 84 chr13 93667181 93667731 -26077167 + MER52A LTR ERV1 1209 1753 -2 661 178 0 38 chr13 93667731 93667888 -26077010 + L1MB1 LINE L1 6018 6168 0 2950 255 96 38 chr13 93667888 93669243 -26075655 - L1ME1 LINE L1 -1814 4332 2876 1924 157 0 6 chr13 93669243 93669555 -26075343 - AluSx SINE Alu 0 312 3 2950 255 96 38 chr13 93669555 93669793 -26075105 - L1ME1 LINE L1 -3270 2876 2653 270 235 106 35 chr13 93670267 93670352 -26074546 + MER96B DNA MER1_type? 327 417 0 612 244 0 0 chr13 93670408 93670535 -26074363 - FLAM_C SINE Alu -16 127 1 3584 210 28 6 chr13 93671803 93672507 -26072391 + MER44D DNA MER2_type 1 592 -13 24 32 0 0 chr13 93672834 93672865 -26072033 + AT_rich Low_complexity Low_complexity 1 31 0 1656 157 159 16 chr13 93673292 93673662 -26071236 + MSTA LTR MaLR 3 425 -3 599 261 139 45 chr13 93674281 93674748 -26070150 + L1ME LINE L1 5265 5775 -387 2378 138 6 3 chr13 93674858 93675221 -26069677 - THE1B LTR MaLR 0 364 1 371 344 109 23 chr13 93675362 93675664 -26069234 - L2 LINE L2 -98 3215 2888 1178 198 177 0 chr13 93675682 93675970 -26068928 + MER44D DNA MER2_type 1 609 0 1079 217 156 34 chr13 93676003 93676313 -26068585 + MLT1A2 LTR MaLR 2 355 -19 1960 136 39 30 chr13 93676313 93676674 -26068224 + THE1B LTR MaLR 1 364 0 1079 217 156 34 chr13 93676674 93676690 -26068208 + MLT1A2 LTR MaLR 355 368 -6 390 358 96 17 chr13 93676699 93676939 -26067959 - L2 LINE L2 -492 2822 2564 284 325 266 17 chr13 93677018 93677255 -26067643 - L2 LINE L2 -150 3163 2868 207 316 218 37 chr13 93677260 93677636 -26067262 - L2 LINE L2 -1555 1759 1316 512 245 137 7 chr13 93677687 93677826 -26067072 - MER5B DNA MER1_type -1 177 21 233 358 51 7 chr13 93677876 93678013 -26066885 - L2 LINE L2 -2065 1249 1107 766 368 41 3 chr13 93678117 93678457 -26066441 - L2 LINE L2 -2890 424 72 1907 205 38 0 chr13 93678487 93678906 -26065992 + L1 LINE L1 4676 5110 -1036 7100 210 68 32 chr13 93678913 93680982 -26063916 - L1 LINE L1 -1753 5812 3670 1923 174 117 8 chr13 93680984 93681370 -26063528 - MSTA LTR MaLR 0 428 1 5666 186 10 10 chr13 93681370 93682382 -26062516 - MSTA-int LTR MaLR 0 1580 569 3407 257 46 41 chr13 93682391 93683522 -26061376 - L1 LINE L1 -5741 1824 14 456 303 64 21 chr13 93685113 93685301 -26059597 - MLT1K LTR MaLR -74 514 319 197 197 13 0 chr13 93686192 93686268 -26058630 + (TA)n Simple_repeat Simple_repeat 2 78 0 1866 245 145 29 chr13 93686273 93686964 -26057934 - LTR48 LTR ERV1 0 787 17 183 42 0 0 chr13 93687009 93687033 -26057865 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr13 93687328 93687356 -26057542 + AT_rich Low_complexity Low_complexity 1 28 0 443 312 60 71 chr13 93687681 93687963 -26056935 + LTR16C LTR ERVL 38 316 -175 37 97 0 0 chr13 93689084 93689198 -26055700 + AT_rich Low_complexity Low_complexity 1 114 0 208 236 0 56 chr13 93690232 93690321 -26054577 + (CATATA)n Simple_repeat Simple_repeat 5 88 0 * 275 250 26 26 chr13 93690263 93690419 -26054479 + (TA)n Simple_repeat Simple_repeat 1 156 0 261 0 0 0 chr13 93690421 93690450 -26054448 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr13 93692831 93692852 -26052046 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 93692987 93693022 -26051876 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 93693783 93693811 -26051087 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 93693884 93693914 -26050984 + AT_rich Low_complexity Low_complexity 1 30 0 255 364 0 11 chr13 93695075 93695163 -26049735 - L2 LINE L2 -4 3268 3182 24 0 0 0 chr13 93695413 93695437 -26049461 + AT_rich Low_complexity Low_complexity 1 24 0 25 83 0 0 chr13 93695605 93695665 -26049233 + AT_rich Low_complexity Low_complexity 1 60 0 234 232 0 18 chr13 93696669 93696725 -26048173 + (TA)n Simple_repeat Simple_repeat 2 56 0 254 304 29 0 chr13 93696952 93697021 -26047877 - MLT1I LTR MaLR -177 232 162 2664 105 3 0 chr13 93698435 93698798 -26046100 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr13 93699325 93699346 -26045552 + AT_rich Low_complexity Low_complexity 1 21 0 259 277 143 59 chr13 93699626 93699868 -26045030 + MIR3 SINE MIR 4 261 -1 243 0 0 0 chr13 93700309 93700336 -26044562 + (TG)n Simple_repeat Simple_repeat 2 28 0 190 177 16 16 chr13 93700338 93700400 -26044498 + GA-rich Low_complexity Low_complexity 2 63 0 21 71 0 0 chr13 93702312 93702354 -26042544 + AT_rich Low_complexity Low_complexity 1 42 0 1026 302 30 54 chr13 93702767 93703271 -26041627 - MLT1H LTR MaLR 0 549 58 332 22 22 0 chr13 93703446 93703491 -26041407 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr13 93703605 93703635 -26041263 + AT_rich Low_complexity Low_complexity 1 30 0 652 158 25 6 chr13 93703765 93703923 -26040975 + CT-rich Low_complexity Low_complexity 3 163 0 24 0 0 0 chr13 93703953 93703977 -26040921 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 93704026 93704047 -26040851 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 93704191 93704215 -26040683 + AT_rich Low_complexity Low_complexity 1 24 0 498 230 53 80 chr13 93705179 93705366 -26039532 - MER20 DNA MER1_type -37 182 1 24 32 0 0 chr13 93705858 93705889 -26039009 + AT_rich Low_complexity Low_complexity 1 31 0 1523 209 0 0 chr13 93705954 93706251 -26038647 - AluJb SINE Alu -15 297 1 2242 47 0 14 chr13 93707093 93707372 -26037526 + AluY SINE Alu 5 279 -32 306 0 0 0 chr13 93707372 93707406 -26037492 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1665 152 3 21 chr13 93707565 93707854 -26037044 + AluSx SINE Alu 1 284 -28 29 0 0 0 chr13 93708660 93708689 -26036209 + AT_rich Low_complexity Low_complexity 1 29 0 8157 53 1 0 chr13 93708697 93709662 -26035236 - LTR5 LTR ERVK -3 966 1 709 233 0 0 chr13 93709679 93709808 -26035090 - FLAM_A SINE Alu -4 129 1 21 71 0 0 chr13 93709952 93709994 -26034904 + AT_rich Low_complexity Low_complexity 1 42 0 1906 154 157 5 chr13 93710340 93710710 -26034188 - MSTA LTR MaLR 0 428 3 633 272 115 18 chr13 93710861 93711402 -26033496 + L1MCc LINE L1 1154 1743 -4899 335 230 0 2 chr13 93711473 93711565 -26033333 + L1MC4 LINE L1 5754 5841 -325 1716 155 28 3 chr13 93711566 93711857 -26033041 - MLT2A2 LTR ERVL -155 298 1 1915 276 112 67 chr13 93711857 93712747 -26032151 + L1MC4 LINE L1 5854 6703 -1339 292 32 81 0 chr13 93712747 93712809 -26032089 + (TA)n Simple_repeat Simple_repeat 2 68 0 1915 276 112 67 chr13 93712809 93713413 -26031485 + L1MC4 LINE L1 6703 7447 -595 13685 146 21 23 chr13 93713413 93715834 -26029064 - Tigger1 DNA MER2_type 0 2418 1 1915 276 112 67 chr13 93715834 93716166 -26028732 + L1MC4 LINE L1 7447 7763 -279 256 305 70 8 chr13 93716356 93716484 -26028414 + L1MD3 LINE L1 7851 7986 -9 201 125 50 0 chr13 93718365 93718405 -26026493 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 342 172 0 23 chr13 93718432 93718519 -26026379 - L1MA7 LINE L1 0 6291 6207 1720 188 0 16 chr13 93718631 93718940 -26025958 + AluJb SINE Alu 3 306 -6 4819 171 17 38 chr13 93719705 93721413 -26023485 - L1MA4A LINE L1 -92 7630 5951 1929 144 68 8 chr13 93721413 93721767 -26023131 + THE1C LTR MaLR 1 375 0 4819 171 17 38 chr13 93721767 93721859 -26023039 - L1MA4A LINE L1 -1771 5951 5859 3083 195 106 46 chr13 93721875 93722610 -26022288 - L1MA4A LINE L1 -6777 788 10 * 7557 237 43 9 chr13 93722604 93724337 -26020561 - L1M2 LINE L1 -5056 1793 1 308 368 25 29 chr13 93724660 93724864 -26020034 - LTR16B LTR ERVL -254 210 8 260 266 73 28 chr13 93725192 93725301 -26019597 - HERV16 LTR ERVL -328 4668 4555 294 322 42 8 chr13 93725431 93725549 -26019349 - MERVL LTR ERVL -626 4859 4738 301 301 35 35 chr13 93725648 93725791 -26019107 - MERVL LTR ERVL -1117 4647 4505 874 210 87 6 chr13 93726115 93726532 -26018366 + LTR54B LTR ERV1 1 497 -1 541 367 77 6 chr13 93727352 93727665 -26017233 - LTR16B LTR ERVL -95 369 35 261 0 0 0 chr13 93728216 93728245 -26016653 + (TG)n Simple_repeat Simple_repeat 2 30 0 347 280 73 57 chr13 93728258 93728630 -26016268 + L1M4 LINE L1 3497 3874 -2272 776 291 22 82 chr13 93729721 93730271 -26014627 + L1M4 LINE L1 3427 3943 -2203 444 308 69 25 chr13 93730272 93730633 -26014265 + L1M4 LINE L1 4109 4485 -1661 27 29 0 0 chr13 93730633 93730667 -26014231 + AT_rich Low_complexity Low_complexity 1 34 0 1728 150 0 18 chr13 93731031 93731311 -26013587 - AluSx SINE Alu -30 282 8 22 0 0 0 chr13 93731508 93731530 -26013368 + AT_rich Low_complexity Low_complexity 1 22 0 237 32 0 0 chr13 93731996 93732027 -26012871 - MADE1 DNA Mariner -17 63 33 2348 271 43 22 chr13 93733018 93734179 -26010719 - L1MEc LINE L1 -2945 3595 2414 421 217 5 133 chr13 93734231 93734434 -26010464 - L1MA10 LINE L1 -1 6333 6157 21 0 0 0 chr13 93734447 93734468 -26010430 + AT_rich Low_complexity Low_complexity 1 21 0 2416 65 3 0 chr13 93734468 93734760 -26010138 + AluY SINE Alu 1 293 -18 4694 99 7 21 chr13 93734760 93735149 -26009749 - L1PA10 LINE L1 -6 6162 5786 2385 63 0 3 chr13 93735149 93735449 -26009449 - AluY SINE Alu -12 299 1 4694 99 7 21 chr13 93735449 93735766 -26009132 - L1PA10 LINE L1 -382 5786 5466 420 268 67 98 chr13 93735766 93736154 -26008744 - L1MEc LINE L1 -4320 2401 2026 21 0 0 0 chr13 93736155 93736176 -26008722 + AT_rich Low_complexity Low_complexity 1 21 0 316 308 68 0 chr13 93736323 93736469 -26008429 + L2 LINE L2 2473 2628 -686 3234 242 31 35 chr13 93736494 93737791 -26007107 - L1MB2 LINE L1 -7 6164 4871 2360 55 21 0 chr13 93737917 93738208 -26006690 - AluY SINE Alu -14 297 1 405 0 0 0 chr13 93738241 93738286 -26006612 + (TG)n Simple_repeat Simple_repeat 2 46 0 247 298 53 0 chr13 93738341 93738455 -26006443 - L1MEc LINE L1 -4550 1990 1871 405 211 0 0 chr13 93738704 93738775 -26006123 + Tigger5 DNA MER2_type 2251 2321 -2 214 303 42 61 chr13 93739193 93739358 -26005540 - MIR SINE MIR -4 258 97 1772 276 5 14 chr13 93739401 93739974 -26004924 - L1M4 LINE L1 -4283 3282 2715 612 215 0 34 chr13 93739986 93740135 -26004763 + L1MA8 LINE L1 6140 6283 -8 1422 313 40 22 chr13 93741218 93741850 -26003048 + L1ME1 LINE L1 5491 6133 -33 308 279 23 0 chr13 93741861 93741947 -26002951 + L1MC4 LINE L1 6615 6702 -1340 2206 307 87 74 chr13 93742017 93742029 -26002869 - L2 LINE L2 -1145 2169 2159 353 81 16 0 chr13 93742029 93742091 -26002807 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2206 307 87 74 chr13 93742091 93743700 -26001198 - L2 LINE L2 -1155 2159 527 1496 213 91 13 chr13 93743702 93744133 -26000765 + MLT2B2 LTR ERVL 1 514 -1 1229 203 134 7 chr13 93744327 93744672 -26000226 - MER67C LTR ERV1 -239 275 1 522 284 52 107 chr13 93744729 93744814 -26000084 - L2 LINE L2 -2915 399 311 1460 163 130 52 chr13 93744814 93745238 -25999660 + MSTB2 LTR MaLR 1 457 0 522 284 52 107 chr13 93745238 93745553 -25999345 - L2 LINE L2 -3003 311 21 288 0 0 0 chr13 93746716 93746748 -25998150 + (CA)n Simple_repeat Simple_repeat 2 33 0 1042 229 32 53 chr13 93746985 93747391 -25997507 - MSTB2 LTR MaLR 0 457 1 31 44 0 0 chr13 93748114 93748159 -25996739 + AT_rich Low_complexity Low_complexity 1 45 0 700 233 0 0 chr13 93748159 93748288 -25996610 - FLAM_A SINE Alu -4 129 1 1943 151 156 5 chr13 93748824 93749196 -25995702 - MSTA LTR MaLR 0 428 1 615 276 113 16 chr13 93749345 93749886 -25995012 + L1MCc LINE L1 1154 1743 -4899 320 244 0 2 chr13 93749957 93750049 -25994849 + L1MC4 LINE L1 5754 5841 -325 1715 158 28 3 chr13 93750050 93750341 -25994557 - MLT2A2 LTR ERVL -155 298 1 1916 275 116 65 chr13 93750341 93751227 -25993671 + L1MC4 LINE L1 5854 6693 -1349 314 33 49 16 chr13 93751227 93751288 -25993610 + (TA)n Simple_repeat Simple_repeat 1 63 0 1916 275 116 65 chr13 93751288 93751882 -25993016 + L1MC4 LINE L1 6693 7447 -595 13723 147 21 22 chr13 93751882 93754304 -25990594 - Tigger1 DNA MER2_type 0 2418 1 1916 275 116 65 chr13 93754304 93754639 -25990259 + L1MC4 LINE L1 7447 7763 -279 245 305 70 8 chr13 93754829 93754957 -25989941 + L1MD3 LINE L1 7851 7986 -9 201 125 50 0 chr13 93756836 93756876 -25988022 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 342 172 0 23 chr13 93756903 93756990 -25987908 - L1MA7 LINE L1 0 6291 6207 1699 191 0 16 chr13 93757103 93757412 -25987486 + AluJb SINE Alu 3 306 -6 25 31 0 0 chr13 93757452 93757484 -25987414 + AT_rich Low_complexity Low_complexity 1 32 0 4801 171 17 38 chr13 93758174 93759882 -25985016 - L1MA4A LINE L1 -92 7630 5951 1909 147 68 8 chr13 93759882 93760236 -25984662 + THE1C LTR MaLR 1 375 0 4801 171 17 38 chr13 93760236 93760328 -25984570 - L1MA4A LINE L1 -1771 5951 5859 3205 189 105 46 chr13 93760344 93761080 -25983818 - L1MA4A LINE L1 -6777 788 10 * 7580 236 43 9 chr13 93761074 93762807 -25982091 - L1M2 LINE L1 -5056 1793 1 308 368 25 29 chr13 93763129 93763333 -25981565 - LTR16B LTR ERVL -254 210 8 260 266 73 28 chr13 93763665 93763774 -25981124 - HERV16 LTR ERVL -328 4668 4555 294 322 42 8 chr13 93763904 93764022 -25980876 - MERVL LTR ERVL -626 4859 4738 335 283 31 57 chr13 93764121 93764280 -25980618 - MERVL LTR ERVL -1117 4647 4493 858 212 87 6 chr13 93764586 93765003 -25979895 + LTR54B LTR ERV1 1 497 -1 540 365 80 6 chr13 93765823 93766135 -25978763 - LTR16B LTR ERVL -95 369 35 261 0 0 0 chr13 93766686 93766715 -25978183 + (TG)n Simple_repeat Simple_repeat 2 30 0 347 280 73 57 chr13 93766728 93767100 -25977798 + L1M4 LINE L1 3497 3874 -2272 825 289 96 72 chr13 93768191 93769949 -25974949 + L1ME LINE L1 3427 5227 -919 348 77 0 0 chr13 93769957 93770009 -25974889 + (TG)n Simple_repeat Simple_repeat 1 52 0 202 200 0 0 chr13 93770009 93770044 -25974854 + GA-rich Low_complexity Low_complexity 2 36 0 350 298 84 0 chr13 93770150 93770281 -25974617 + L1ME LINE L1 5396 5537 -625 6917 57 9 0 chr13 93770280 93771283 -25973615 + L1PA7 LINE L1 5141 6151 -3 1343 151 135 4 chr13 93772849 93773108 -25971790 + AluJb SINE Alu 1 293 -19 1737 191 15 9 chr13 93773889 93774229 -25970669 - MER2 DNA MER2_type -1 343 2 1110 243 70 48 chr13 93774465 93774839 -25970059 - MLT1B LTR MaLR 0 390 9 2121 112 7 0 chr13 93774871 93775166 -25969732 + AluSp SINE Alu 1 297 -16 194 219 324 9 chr13 93775455 93775560 -25969338 + MIR3 SINE MIR 4 141 -67 3405 86 94 8 chr13 93775568 93776101 -25968797 - LTR19B LTR ERV1 -1 579 1 1997 125 0 16 chr13 93776230 93776543 -25968355 - AluY SINE Alu -3 308 1 1476 210 25 68 chr13 93776573 93776973 -25967925 - MLT1B LTR MaLR -7 383 1 21 57 0 0 chr13 93777529 93777564 -25967334 + AT_rich Low_complexity Low_complexity 1 35 0 262 137 0 96 chr13 93778166 93778239 -25966659 + (TA)n Simple_repeat Simple_repeat 2 67 0 203 152 22 0 chr13 93778279 93778325 -25966573 + (TA)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr13 93778325 93778346 -25966552 + (CA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 93778644 93778666 -25966232 + AT_rich Low_complexity Low_complexity 1 22 0 594 286 61 68 chr13 93780178 93780871 -25964027 + L1MDa LINE L1 1290 1977 -4563 239 242 15 0 chr13 93781233 93781299 -25963599 + A-rich Low_complexity Low_complexity 4 70 0 22 35 0 0 chr13 93781409 93781438 -25963460 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 93783354 93783379 -25961519 + AT_rich Low_complexity Low_complexity 1 25 0 519 254 8 8 chr13 93783968 93784086 -25960812 - MER3 DNA MER1_type -91 118 1 978 248 123 11 chr13 93784189 93784540 -25960358 - MLT1B LTR MaLR 0 390 1 254 317 122 22 chr13 93785759 93785939 -25958959 - MIR SINE MIR -5 257 60 21 0 0 0 chr13 93787500 93787521 -25957377 + AT_rich Low_complexity Low_complexity 1 21 0 239 204 45 11 chr13 93787633 93787721 -25957177 + (TA)n Simple_repeat Simple_repeat 2 92 0 21 57 0 0 chr13 93787968 93788003 -25956895 + AT_rich Low_complexity Low_complexity 1 35 0 5898 155 48 43 chr13 93788022 93789177 -25955721 - L1M1 LINE L1 -539 5763 4589 1973 112 20 3 chr13 93789177 93789471 -25955427 + AluSg SINE Alu 1 299 -11 5898 155 48 43 chr13 93789471 93790104 -25954794 - L1M1 LINE L1 -1713 4589 3961 1270 199 17 34 chr13 93790124 93790416 -25954482 - AluJb SINE Alu -25 287 1 388 240 58 0 chr13 93790465 93790586 -25954312 - L1M1 LINE L1 -2180 3966 3839 1932 134 14 7 chr13 93792368 93792658 -25952240 + AluSx SINE Alu 1 292 -20 871 206 50 20 chr13 93792765 93792964 -25951934 + MLT1A1 LTR MaLR 5 209 -156 553 168 11 0 chr13 93792959 93793054 -25951844 - 5S rRNA rRNA -24 97 2 * 593 244 64 12 chr13 93793041 93793213 -25951685 + MLT1A1 LTR MaLR 194 374 0 575 324 147 24 chr13 93793223 93793603 -25951295 + L2 LINE L2 2839 3265 -48 27 29 0 0 chr13 93794257 93794291 -25950607 + AT_rich Low_complexity Low_complexity 1 34 0 1891 216 17 66 chr13 93794621 93795149 -25949749 + MLT1D LTR MaLR 1 502 -3 910 196 0 6 chr13 93795245 93795403 -25949495 - FRAM SINE Alu -20 156 1 227 255 75 9 chr13 93796142 93796248 -25948650 - L1 LINE L1 -1071 5075 4963 239 313 40 40 chr13 93796924 93797023 -25947875 + L2 LINE L2 3193 3291 -22 21 57 0 0 chr13 93797257 93797292 -25947606 + AT_rich Low_complexity Low_complexity 1 35 0 3610 244 45 19 chr13 93797451 93799332 -25945566 + L1MD1 LINE L1 4312 6242 0 307 324 34 14 chr13 93799341 93799489 -25945409 + L1MEd LINE L1 981 1131 -4988 7403 42 5 0 chr13 93799744 93801427 -25943471 - L1PA5 LINE L1 0 6154 4467 6632 31 0 1 chr13 93801427 93802222 -25942676 + L1PA5 LINE L1 3652 4445 -1701 2087 124 0 0 chr13 93802402 93802693 -25942205 + AluSx SINE Alu 1 291 -21 347 415 12 25 chr13 93802709 93803032 -25941866 + L1MEc LINE L1 46 364 -6032 577 190 0 109 chr13 93804164 93804338 -25940560 - Tigger2 DNA MER2_type 0 2718 2564 923 200 5 37 chr13 93804339 93804554 -25940344 - Tigger2 DNA MER2_type -2510 208 1 1851 155 0 3 chr13 93805104 93805401 -25939497 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr13 93805481 93805502 -25939396 + AT_rich Low_complexity Low_complexity 1 21 0 1271 241 80 40 chr13 93807335 93807784 -25937114 - MLT1C LTR MaLR 0 467 1 2118 105 7 0 chr13 93807993 93808278 -25936620 + AluSx SINE Alu 1 287 -25 11644 150 48 5 chr13 93808369 93810390 -25934508 - Tigger1 DNA MER2_type -2 2416 308 978 41 0 0 chr13 93810391 93810512 -25934386 - L1PA5 LINE L1 -182 5972 5852 20215 91 12 3 chr13 93810524 93813265 -25931633 - HERVL-A2 LTR ERVL -2890 2764 1 3018 94 44 7 chr13 93813265 93813701 -25931197 - MLT2A2 LTR ERVL 0 453 2 220 164 30 45 chr13 93813861 93813928 -25930970 + A-rich Low_complexity Low_complexity 1 66 0 507 377 45 0 chr13 93814309 93814487 -25930411 + HAL1 LINE L1 340 535 -1972 3560 37 0 0 chr13 93814487 93814924 -25929974 - L1PA4 LINE L1 -1 6154 5718 507 377 45 0 chr13 93814924 93815010 -25929888 + HAL1 LINE L1 535 616 -1891 354 318 99 15 chr13 93815056 93815257 -25929641 + HAL1 LINE L1 1240 1457 -1050 215 268 18 0 chr13 93815282 93815338 -25929560 + MIR SINE MIR 195 251 -11 1400 92 0 29 chr13 93815345 93815552 -25929346 - AluY SINE Alu -1 310 110 2285 143 22 3 chr13 93816866 93817223 -25927675 + THE1B LTR MaLR 1 364 0 892 250 38 31 chr13 93817248 93817536 -25927362 + L1MA10 LINE L1 6038 6327 -7 5527 123 19 1 chr13 93817762 93819298 -25925600 + L1PA13 LINE L1 4629 6160 -3 1899 176 0 6 chr13 93819630 93819943 -25924955 + AluSx SINE Alu 1 311 -1 1990 168 16 19 chr13 93820017 93820381 -25924517 - THE1B LTR MaLR -1 363 1 276 111 0 0 chr13 93820818 93820863 -25924035 + (CA)n Simple_repeat Simple_repeat 2 46 0 360 0 0 0 chr13 93821040 93821080 -25923818 + (TG)n Simple_repeat Simple_repeat 1 40 0 270 0 0 0 chr13 93821079 93821109 -25923789 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1168 224 94 0 chr13 93821109 93821240 -25923658 - AluJo SINE Alu -34 278 161 1969 128 7 0 chr13 93821240 93821538 -25923360 + AluSc SINE Alu 3 302 -7 1168 224 94 0 chr13 93821538 93821660 -25923238 - AluJo SINE Alu -151 161 1 289 260 31 31 chr13 93821660 93821756 -25923142 + L2 LINE L2 3215 3310 -3 593 299 32 11 chr13 93823128 93823315 -25921583 - MER58A DNA MER1_type -25 199 9 466 180 40 10 chr13 93824363 93824463 -25920435 + MER67D LTR ERV1 1 103 -411 1141 295 49 18 chr13 93824587 93825157 -25919741 + L1MC5 LINE L1 7003 7590 -371 23 54 0 0 chr13 93825159 93825196 -25919702 + AT_rich Low_complexity Low_complexity 1 37 0 383 271 106 18 chr13 93825235 93825405 -25919493 + L1MC4 LINE L1 7717 7901 -141 1447 192 23 89 chr13 93825777 93826204 -25918694 + L1MA9 LINE L1 5883 6281 -31 24 53 0 0 chr13 93826204 93826242 -25918656 + AT_rich Low_complexity Low_complexity 1 38 0 1119 221 48 14 chr13 93826584 93826959 -25917939 + L1M2 LINE L1 4997 5385 -774 1860 141 3 0 chr13 93826963 93827253 -25917645 + L1M2 LINE L1 5445 5735 -556 234 208 0 0 chr13 93827308 93827361 -25917537 + GA-rich Low_complexity Low_complexity 2 54 0 239 30 0 0 chr13 93828046 93828079 -25916819 - Alu SINE Alu -8 293 261 23 54 0 0 chr13 93830725 93830762 -25914136 + AT_rich Low_complexity Low_complexity 1 37 0 25 83 0 0 chr13 93831706 93831766 -25913132 + AT_rich Low_complexity Low_complexity 1 60 0 2653 174 49 57 chr13 93832905 93833502 -25911396 + LTR9 LTR ERV1 1 592 -20 25 0 0 0 chr13 93835367 93835392 -25909506 + AT_rich Low_complexity Low_complexity 1 25 0 38 39 0 0 chr13 93835852 93835904 -25908994 + AT_rich Low_complexity Low_complexity 1 52 0 392 259 77 73 chr13 93835910 93836169 -25908729 + MIR SINE MIR 3 262 0 23 54 0 0 chr13 93836261 93836298 -25908600 + AT_rich Low_complexity Low_complexity 1 37 0 238 216 20 0 chr13 93837179 93837230 -25907668 - MLT1K LTR MaLR -379 209 158 350 313 54 20 chr13 93837765 93837912 -25906986 - MIR SINE MIR -79 183 32 305 370 109 17 chr13 93838600 93839003 -25905895 + HAL1 LINE L1 1470 1909 -598 26 50 0 0 chr13 93839661 93839701 -25905197 + AT_rich Low_complexity Low_complexity 1 40 0 1623 261 66 36 chr13 93839771 93840269 -25904629 - MER21B LTR ERV1 -287 576 64 2647 27 0 0 chr13 93840275 93840575 -25904323 + AluY SINE Alu 1 300 -11 285 326 0 22 chr13 93840617 93840706 -25904192 - MER21B LTR ERV1 -775 88 2 2946 204 32 17 chr13 93840707 93841368 -25903530 - MLT1B-int LTR MaLR -698 673 3 1311 246 22 13 chr13 93841405 93841718 -25903180 - MLT1B LTR MaLR -74 316 1 337 315 32 58 chr13 93842160 93842371 -25902527 - MLT1I LTR MaLR -123 286 101 189 0 0 0 chr13 93844451 93844472 -25900426 + (TC)n Simple_repeat Simple_repeat 2 22 0 253 267 17 0 chr13 93844578 93844638 -25900260 + L2 LINE L2 3241 3301 -12 1201 289 103 0 chr13 93846788 93847127 -25897771 + MER45C DNA AcHobo 1 374 -579 278 269 51 0 chr13 93847155 93847233 -25897665 + MER45C DNA AcHobo 439 520 -433 284 319 156 0 chr13 93847442 93847602 -25897296 - LTR50 LTR ERVL -522 273 89 1537 152 137 56 chr13 93848191 93848585 -25896313 - MSTA LTR MaLR 0 428 3 282 275 126 36 chr13 93849099 93849315 -25895583 - L1MDa LINE L1 -4559 1867 1696 327 302 160 23 chr13 93849338 93849682 -25895216 - L1MDa LINE L1 -4900 1526 1136 2147 157 50 33 chr13 93849858 93850279 -25894619 + MSTA LTR MaLR 1 428 0 44 56 0 0 chr13 93850380 93850452 -25894446 + AT_rich Low_complexity Low_complexity 1 72 0 2798 198 30 2 chr13 93851066 93851638 -25893260 - L1MC3 LINE L1 -59 7726 7139 2290 226 47 71 chr13 93851736 93852638 -25892260 - L1MCb LINE L1 -4434 2130 1176 2232 121 0 0 chr13 93852638 93852943 -25891955 - AluSx SINE Alu -7 305 1 2290 226 47 71 chr13 93852943 93853536 -25891362 - L1MCb LINE L1 -5388 1176 570 180 0 0 0 chr13 93856497 93856517 -25888381 + (TA)n Simple_repeat Simple_repeat 1 20 0 479 280 40 0 chr13 93856885 93857035 -25887863 + MER105 DNA DNA 2 157 -47 21 0 0 0 chr13 93857144 93857165 -25887733 + AT_rich Low_complexity Low_complexity 1 21 0 2146 102 0 3 chr13 93857165 93857460 -25887438 - AluSq SINE Alu -19 294 1 672 314 113 33 chr13 93857462 93858306 -25886592 - L1MEc LINE L1 -4482 1914 1004 313 341 57 68 chr13 93858375 93858744 -25886154 - L1MEc LINE L1 -5699 697 333 1428 260 105 22 chr13 93859086 93859589 -25885309 - LTR38 LTR ERV1 -11 545 1 551 250 66 35 chr13 93860202 93860430 -25884468 + L1ME1 LINE L1 5321 5555 -609 1974 101 0 40 chr13 93860439 93860736 -25884162 + AluY SINE Alu 5 289 -22 440 239 128 122 chr13 93860737 93861097 -25883801 - L1M4 LINE L1 -1712 4434 4073 250 193 0 18 chr13 93861161 93861218 -25883680 - L1M4 LINE L1 -2195 3951 3896 371 307 109 48 chr13 93861295 93861754 -25883144 - L1M4 LINE L1 -2275 3871 3385 720 256 79 20 chr13 93861773 93862178 -25882720 + L1ME1 LINE L1 5723 6166 0 3614 59 28 167 chr13 93862882 93863590 -25881308 - LTR66 LTR ERVL 0 610 1 266 350 102 20 chr13 93863777 93863974 -25880924 + HERV16 LTR ERVL 989 1201 -3795 2298 71 0 3 chr13 93864677 93864974 -25879924 - AluY SINE Alu -15 296 1 2670 13 0 7 chr13 93865171 93865475 -25879423 + AluYa5 SINE Alu 1 302 -9 216 0 0 0 chr13 93865541 93865565 -25879333 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 413 175 41 21 chr13 93865617 93865714 -25879184 - ERVL LTR ERVL -2569 3195 3097 184 394 16 16 chr13 93865721 93865848 -25879050 + MIR SINE MIR 57 183 -79 279 326 171 12 chr13 93867070 93867328 -25877570 + L2 LINE L2 2447 2745 -569 272 317 30 0 chr13 93867494 93867595 -25877303 - MIR SINE MIR -111 151 48 961 276 97 53 chr13 93868504 93869072 -25875826 + MLT1E LTR MaLR 1 593 0 331 186 78 37 chr13 93870023 93870135 -25874763 - L1ME1 LINE L1 0 6166 6048 229 276 13 0 chr13 93870650 93870726 -25874172 + T-rich Low_complexity Low_complexity 4 80 0 222 37 0 0 chr13 93870982 93871009 -25873889 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1910 103 3 17 chr13 93871012 93871304 -25873594 - AluY SINE Alu 0 311 24 1929 194 68 12 chr13 93871560 93871987 -25872911 + MER39 LTR ERV1 257 707 0 22 35 0 0 chr13 93872520 93872549 -25872349 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr13 93873975 93874018 -25870880 + AT_rich Low_complexity Low_complexity 1 43 0 514 284 77 50 chr13 93874033 93874477 -25870421 + L1MC5 LINE L1 6990 7445 -516 879 303 111 20 chr13 93874485 93875388 -25869510 + L1M2 LINE L1 1448 2289 -4107 1641 230 53 65 chr13 93875418 93875736 -25869162 + L1M2 LINE L1 2328 2648 -3567 2122 122 0 0 chr13 93875736 93876023 -25868875 + AluSx SINE Alu 1 287 -25 1641 230 53 65 chr13 93876023 93876255 -25868643 + L1M2 LINE L1 2648 2869 -3346 2150 136 0 0 chr13 93876255 93876565 -25868333 + AluSx SINE Alu 3 312 0 1641 230 53 65 chr13 93876565 93876803 -25868095 + L1M2 LINE L1 2869 3108 -3107 7338 38 5 0 chr13 93876810 93878034 -25866864 + L1PA5 LINE L1 4927 6154 0 1644 286 92 48 chr13 93878071 93878346 -25866552 + L1ME2 LINE L1 3861 4122 -2024 198 0 0 0 chr13 93878346 93878368 -25866530 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1644 286 92 48 chr13 93878368 93879435 -25865463 + L1ME2 LINE L1 4122 5262 -884 23 0 0 0 chr13 93879465 93879488 -25865410 + AT_rich Low_complexity Low_complexity 1 23 0 2042 117 0 64 chr13 93879533 93879859 -25865039 + AluSg SINE Alu 3 307 -3 387 73 0 0 chr13 93879859 93879914 -25864984 + (TA)n Simple_repeat Simple_repeat 2 56 0 183 133 33 17 chr13 93879981 93880041 -25864857 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 28 71 0 0 chr13 93880069 93880125 -25864773 + AT_rich Low_complexity Low_complexity 1 56 0 393 253 0 0 chr13 93880127 93880206 -25864692 + MER70A LTR ERVL 217 295 -177 215 181 43 75 chr13 93880210 93880304 -25864594 + (TTATA)n Simple_repeat Simple_repeat 5 95 0 1615 254 68 36 chr13 93880339 93880694 -25864204 + L1ME2 LINE L1 5470 5812 -352 1664 177 7 13 chr13 93880694 93880993 -25863905 + AluJo SINE Alu 1 297 -15 1615 254 68 36 chr13 93880993 93881303 -25863595 + L1ME2 LINE L1 5812 6156 -8 267 276 94 10 chr13 93881303 93881495 -25863403 + L1MC5 LINE L1 7475 7682 -279 1975 216 34 100 chr13 93881497 93882086 -25862812 + MER70B LTR ERVL 3 552 -26 207 100 0 0 chr13 93882585 93882615 -25862283 + (A)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr13 93885029 93885061 -25859837 + AT_rich Low_complexity Low_complexity 1 32 0 2144 125 0 19 chr13 93885089 93885402 -25859496 + AluSx SINE Alu 6 312 0 1955 139 7 0 chr13 93885828 93886116 -25858782 - AluSx SINE Alu -22 290 1 1267 125 25 20 chr13 93887358 93887558 -25857340 - AluSg/x SINE Alu -24 288 88 28 0 0 0 chr13 93888953 93888981 -25855917 + AT_rich Low_complexity Low_complexity 1 28 0 857 105 0 9 chr13 93888981 93889095 -25855803 - AluSq/x SINE Alu -193 120 8 22 35 0 0 chr13 93889316 93889345 -25855553 + AT_rich Low_complexity Low_complexity 1 29 0 33 25 0 0 chr13 93890006 93890046 -25854852 + AT_rich Low_complexity Low_complexity 1 40 0 2041 99 0 18 chr13 93890108 93890417 -25854481 + AluSc SINE Alu 1 304 0 213 39 0 0 chr13 93890707 93890733 -25854165 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1852 117 4 8 chr13 93890735 93891000 -25853898 - AluSg SINE Alu -44 266 3 918 319 112 37 chr13 93892469 93893065 -25851833 + L2 LINE L2 271 911 -2403 319 227 136 60 chr13 93893216 93893467 -25851431 - HAL1 LINE L1 -185 2322 2053 2170 125 0 3 chr13 93893468 93893779 -25851119 - AluSg SINE Alu 0 310 1 320 306 22 49 chr13 93893811 93893994 -25850904 + MLT1J LTR MaLR 117 294 -217 356 220 47 157 chr13 93894024 93894260 -25850638 - HAL1 LINE L1 -1207 1300 1091 2023 115 14 0 chr13 93894506 93894802 -25850096 + AluSq SINE Alu 1 300 -13 25 95 0 0 chr13 93895053 93895127 -25849771 + AT_rich Low_complexity Low_complexity 1 74 0 951 277 99 22 chr13 93895792 93896196 -25848702 - L1MEc LINE L1 -5940 456 22 310 417 14 30 chr13 93896586 93896881 -25848017 - L2 LINE L2 -585 2729 2440 237 307 39 52 chr13 93896942 93897095 -25847803 + MIR SINE MIR 105 255 -7 1090 236 11 14 chr13 93897953 93898229 -25846669 + L1MB8 LINE L1 2508 2782 -3364 * 3222 213 32 58 chr13 93898225 93899710 -25845188 + L1MB8 LINE L1 4734 6175 -3 225 102 102 16 chr13 93900232 93900360 -25844538 + (TA)n Simple_repeat Simple_repeat 1 139 0 24 32 0 0 chr13 93902239 93902270 -25842628 + AT_rich Low_complexity Low_complexity 1 31 0 2131 125 0 0 chr13 93903083 93903378 -25841520 + AluSx SINE Alu 1 295 -17 39 0 0 0 chr13 93903378 93903417 -25841481 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr13 93903486 93903528 -25841370 + AT_rich Low_complexity Low_complexity 1 42 0 306 0 0 0 chr13 93903866 93903900 -25840998 + (TC)n Simple_repeat Simple_repeat 1 34 0 300 91 0 0 chr13 93903899 93903943 -25840955 + (CA)n Simple_repeat Simple_repeat 1 44 0 * 22 80 0 0 chr13 93904481 93904531 -25840367 + AT_rich Low_complexity Low_complexity 1 50 0 285 295 67 47 chr13 93905695 93905888 -25839010 - LTR33 LTR ERVL -67 454 258 23 33 0 0 chr13 93906180 93906210 -25838688 + AT_rich Low_complexity Low_complexity 1 30 0 2073 122 17 0 chr13 93906230 93906525 -25838373 + AluSx SINE Alu 1 300 -12 5485 165 34 11 chr13 93906528 93906690 -25838208 - L1MA4 LINE L1 -22 7697 7540 1931 108 0 32 chr13 93906690 93906969 -25837929 + AluSc SINE Alu 1 270 -39 1383 46 0 0 chr13 93906969 93907144 -25837754 + (GGAA)n Simple_repeat Simple_repeat 2 176 0 5485 165 34 11 chr13 93907144 93908844 -25836054 - L1MA4 LINE L1 -178 7541 5791 668 193 29 86 chr13 93908860 93908926 -25835972 - L1MA4 LINE L1 -4352 3213 3145 2194 122 0 3 chr13 93908926 93909237 -25835661 - AluSg SINE Alu 0 310 1 668 193 29 86 chr13 93909237 93909413 -25835485 - L1MA4 LINE L1 -4420 3145 2985 4069 252 44 26 chr13 93909421 93911210 -25833688 - L1MA4 LINE L1 -5052 2513 14 22 0 0 0 chr13 93911485 93911507 -25833391 + AT_rich Low_complexity Low_complexity 1 22 0 327 317 85 60 chr13 93913179 93913498 -25831400 - L2 LINE L2 -1300 2014 1688 525 319 47 21 chr13 93914240 93914475 -25830423 + MIR SINE MIR 22 262 0 21 71 0 0 chr13 93916654 93916696 -25828202 + AT_rich Low_complexity Low_complexity 1 42 0 187 370 12 12 chr13 93916699 93916780 -25828118 - L2 LINE L2 -44 3228 3148 1215 197 111 9 chr13 93916782 93917132 -25827766 + LTR37A LTR ERV1 1 386 -40 2671 143 19 0 chr13 93917520 93917940 -25826958 - MSTA LTR MaLR 0 428 1 8811 187 23 6 chr13 93917940 93919562 -25825336 - MSTA-int LTR MaLR 0 1651 1 1073 157 5 59 chr13 93919562 93919632 -25825266 - MSTA LTR MaLR 0 428 356 2174 119 0 10 chr13 93919632 93919943 -25824955 + AluSc SINE Alu 1 308 -1 1073 157 5 59 chr13 93919943 93920076 -25824822 - MSTA LTR MaLR -72 356 236 291 157 0 0 chr13 93920079 93920130 -25824768 + (TA)n Simple_repeat Simple_repeat 2 52 0 2728 7 0 0 chr13 93920257 93920556 -25824342 - AluYa5 SINE Alu -12 299 1 24 32 0 0 chr13 93920780 93920811 -25824087 + AT_rich Low_complexity Low_complexity 1 31 0 456 199 0 135 chr13 93921712 93921853 -25823045 + MER92B LTR ERV1 5 126 -510 261 186 68 0 chr13 93921970 93922029 -25822869 + MER92C LTR ERV1 492 554 0 21 89 0 0 chr13 93923482 93923538 -25821360 + AT_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chr13 93924527 93924563 -25820335 + AT_rich Low_complexity Low_complexity 1 36 0 2824 179 59 32 chr13 93925125 93925846 -25819052 - LTR1 LTR ERV1 0 785 12 1369 183 15 11 chr13 93926787 93927049 -25817849 + AluJo SINE Alu 32 294 -18 1973 134 0 3 chr13 93927052 93927367 -25817531 + AluY SINE Alu 1 311 0 2183 115 0 3 chr13 93928569 93928873 -25816025 + AluSc SINE Alu 1 303 -6 1984 174 15 0 chr13 93929434 93929773 -25815125 + MER7A DNA MER2_type 4 345 -1 2399 216 23 16 chr13 93929788 93930038 -25814860 - MER89 LTR ERV1 -25 534 287 2236 160 6 3 chr13 93930038 93930401 -25814497 - THE1B LTR MaLR 0 364 1 2399 216 23 16 chr13 93930401 93930665 -25814233 - MER89 LTR ERV1 -272 287 16 2188 120 0 0 chr13 93930701 93931005 -25813893 + AluSx SINE Alu 1 304 0 248 266 101 50 chr13 93931010 93931126 -25813772 + L1ME3A LINE L1 3741 3850 -2296 2213 183 33 22 chr13 93931126 93931580 -25813318 - LOR1b LTR ERV1 -2 459 1 248 266 101 50 chr13 93931580 93931681 -25813217 + L1ME3A LINE L1 3850 3969 -2177 494 198 22 0 chr13 93931688 93931779 -25813119 - MLT1E3 LTR MaLR -531 93 1 1095 264 45 43 chr13 93931810 93932455 -25812443 + L1ME3A LINE L1 4037 4682 -1464 788 303 86 58 chr13 93932502 93933025 -25811873 + L1ME3A LINE L1 5353 5907 -263 243 0 0 0 chr13 93933025 93933052 -25811846 + (CA)n Simple_repeat Simple_repeat 1 27 0 788 303 86 58 chr13 93933052 93933306 -25811592 + L1ME3A LINE L1 5907 6152 -18 188 304 54 54 chr13 93934141 93934233 -25810665 - MIR SINE MIR -168 94 3 21 36 0 0 chr13 93934247 93934275 -25810623 + AT_rich Low_complexity Low_complexity 1 28 0 515 194 9 0 chr13 93934297 93934405 -25810493 - L1PB4 LINE L1 0 6156 6048 26 64 0 0 chr13 93934729 93934776 -25810122 + AT_rich Low_complexity Low_complexity 1 47 0 180 287 166 25 chr13 93935463 93935526 -25809372 + MIR SINE MIR 84 137 -125 2101 116 3 52 chr13 93935526 93935853 -25809045 - AluSq SINE Alu -2 311 1 180 287 166 25 chr13 93935853 93935946 -25808952 + MIR SINE MIR 137 262 0 228 275 14 0 chr13 93935963 93936059 -25808839 + (TA)n Simple_repeat Simple_repeat 1 97 0 2189 112 3 3 chr13 93936309 93936603 -25808295 - AluSg SINE Alu -12 298 5 622 290 23 18 chr13 93937538 93937755 -25807143 + MER20 DNA MER1_type 1 218 -1 293 298 48 10 chr13 93941159 93941263 -25803635 - L1ME LINE L1 -5926 144 37 2217 82 7 3 chr13 93941558 93941849 -25803049 - AluSq SINE Alu -21 292 1 1699 146 41 34 chr13 93941881 93942175 -25802723 - AluSx SINE Alu -14 298 3 2370 47 43 3 chr13 93942267 93942566 -25802332 - AluY SINE Alu 0 311 1 230 241 0 24 chr13 93943496 93943579 -25801319 + (TATG)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr13 93944187 93944208 -25800690 + AT_rich Low_complexity Low_complexity 1 21 0 496 358 7 18 chr13 93945200 93945482 -25799416 + BaEV-int LTR ERV1 725 1003 -6782 245 352 12 12 chr13 93945482 93945644 -25799254 + GA-rich Low_complexity Low_complexity 2 163 0 255 314 12 0 chr13 93945846 93945932 -25798966 + L3 LINE CR1 1459 1545 -32 2052 85 11 0 chr13 93945944 93946204 -25798694 + AluSc SINE Alu 3 265 -44 672 289 71 55 chr13 93946325 93946564 -25798334 + BaEV-int LTR ERV1 1623 1857 -5419 4748 55 7 0 chr13 93946564 93947151 -25797747 - LTR10C LTR ERV1 0 591 1 672 289 71 55 chr13 93947151 93947575 -25797323 + BaEV-int LTR ERV1 1857 2718 -4558 1998 123 12 19 chr13 93947842 93948167 -25796731 - LTR19C LTR ERV1 -359 420 98 655 336 8 18 chr13 93948211 93948655 -25796243 + BaEV-int LTR ERV1 4119 4609 -2040 2082 132 0 0 chr13 93948924 93949219 -25795679 + AluY SINE Alu 3 297 -14 1577 330 36 45 chr13 93949670 93950911 -25793987 + BaEV-int LTR ERV1 5282 6511 -138 24 53 0 0 chr13 93952703 93952741 -25792157 + AT_rich Low_complexity Low_complexity 1 38 0 1914 149 0 17 chr13 93954167 93954462 -25790436 + AluSx SINE Alu 4 293 -19 257 179 39 13 chr13 93954911 93954989 -25789909 + (TA)n Simple_repeat Simple_repeat 1 80 0 29 28 0 0 chr13 93956379 93956415 -25788483 + AT_rich Low_complexity Low_complexity 1 36 0 703 142 214 23 chr13 93956954 93957150 -25787748 - L1MA9 LINE L1 -5 6307 6069 239 111 0 37 chr13 93957408 93957462 -25787436 + (TTA)n Simple_repeat Simple_repeat 1 52 0 593 191 7 59 chr13 93957638 93957774 -25787124 - FLAM_A SINE Alu -4 129 1 305 295 16 49 chr13 93958501 93958623 -25786275 + HAL1b LINE L1 733 850 -498 5535 69 77 0 chr13 93960259 93961028 -25783870 - L1PA8 LINE L1 -1 6171 5344 1498 259 73 63 chr13 93961052 93961670 -25783228 + MLT1E2 LTR MaLR 1 624 -2 286 333 76 21 chr13 93961796 93961940 -25782958 - MIR SINE MIR -108 154 3 1772 168 26 45 chr13 93962460 93962842 -25782056 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr13 93963075 93963096 -25781802 + AT_rich Low_complexity Low_complexity 1 21 0 280 332 121 58 chr13 93963276 93963431 -25781467 - L2 LINE L2 -429 2885 2741 2035 134 0 0 chr13 93963431 93963721 -25781177 - AluSx SINE Alu -9 303 14 280 332 121 58 chr13 93963721 93964011 -25780887 - L2 LINE L2 -573 2741 2412 1183 285 140 58 chr13 93964149 93964338 -25780560 + MLT1E3 LTR MaLR 1 173 -451 1374 185 58 52 chr13 93964338 93964700 -25780198 + THE1B LTR MaLR 1 364 0 1183 285 140 58 chr13 93964700 93965110 -25779788 + MLT1E3 LTR MaLR 173 619 -5 904 279 56 24 chr13 93965117 93965582 -25779316 + MLT1E1-int LTR MaLR 3 605 -766 468 337 25 99 chr13 93965785 93966218 -25778680 + MLT1E1-int LTR MaLR 692 1092 -279 288 143 0 0 chr13 93966219 93966275 -25778623 + (T)n Simple_repeat Simple_repeat 1 56 0 288 70 0 0 chr13 93966282 93966325 -25778573 - L1PA6 LINE L1 -2 6152 6110 2115 90 0 4 chr13 93966325 93966602 -25778296 - AluSq SINE Alu -37 276 1 549 286 36 76 chr13 93966641 93966917 -25777981 + MLT1E1-int LTR MaLR 1107 1371 0 1600 205 62 117 chr13 93966917 93966950 -25777948 + MLT1E1 LTR MaLR 1 34 -620 1439 194 112 6 chr13 93966950 93967087 -25777811 + MLT1A1 LTR MaLR 1 122 -243 2155 105 0 0 chr13 93967087 93967364 -25777534 + AluSc SINE Alu 28 304 -5 1439 194 112 6 chr13 93967364 93967556 -25777342 + MLT1A1 LTR MaLR 122 365 0 1600 205 62 117 chr13 93967556 93968214 -25776684 + MLT1E1 LTR MaLR 34 654 0 2197 121 0 0 chr13 93968365 93968662 -25776236 - AluSx SINE Alu -15 297 1 927 244 251 43 chr13 93969530 93970179 -25774719 - LTR50 LTR ERVL 0 795 12 238 343 49 20 chr13 93970471 93970573 -25774325 - L2 LINE L2 -4 3268 3164 361 288 0 0 chr13 93970664 93970775 -25774123 + (TA)n Simple_repeat Simple_repeat 2 112 0 237 222 0 0 chr13 93971118 93971181 -25773717 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1659 198 16 9 chr13 93971181 93971504 -25773394 + MER2 DNA MER2_type 20 344 -1 938 31 12 59 chr13 93971504 93971830 -25773068 + (CA)n Simple_repeat Simple_repeat 1 310 0 180 0 0 0 chr13 93972057 93972077 -25772821 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1403 279 123 23 chr13 93972357 93972885 -25772013 + MER77 LTR ERV1 41 671 -24 1646 144 72 4 chr13 93973600 93973877 -25771021 + AluSx SINE Alu 1 296 -16 1307 130 40 14 chr13 93975956 93976179 -25768719 - MER30 DNA MER1_type 0 230 2 3850 211 65 14 chr13 93977368 93978366 -25766532 + L1MC3 LINE L1 6712 7760 -25 1017 303 46 7 chr13 93979452 93979885 -25765013 - LTR16B LTR ERVL -7 457 8 21 36 0 0 chr13 93982074 93982102 -25762796 + AT_rich Low_complexity Low_complexity 1 28 0 6629 17 0 0 chr13 93982347 93983108 -25761790 - L1PA2 LINE L1 0 6155 5395 438 338 77 5 chr13 93984470 93984677 -25760221 + MIR SINE MIR 13 234 -28 2572 40 3 0 chr13 93986141 93986445 -25758453 + AluY SINE Alu 2 306 -5 21 0 0 0 chr13 93986751 93986772 -25758126 + AT_rich Low_complexity Low_complexity 1 21 0 264 339 73 6 chr13 93987363 93987528 -25757370 - Tigger8 DNA MER2_type -170 496 321 482 328 111 0 chr13 93987559 93987794 -25757104 - Tigger8 DNA MER2_type -398 268 8 236 263 35 0 chr13 93988861 93988918 -25755980 - MER5A DNA MER1_type -113 76 18 187 275 0 0 chr13 93989015 93989055 -25755843 + MER5A DNA MER1_type 136 175 -14 212 59 29 0 chr13 93989184 93989218 -25755680 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 438 327 130 7 chr13 93990866 93991166 -25753732 - HAL1 LINE L1 -905 1602 1266 240 265 24 36 chr13 93991275 93991358 -25753540 + MIR SINE MIR 7 88 -174 2062 88 9 53 chr13 93991501 93991821 -25753077 - AluSc SINE Alu -3 306 1 33 0 0 0 chr13 93991919 93991952 -25752946 + AT_rich Low_complexity Low_complexity 1 33 0 1262 219 7 31 chr13 93991985 93992273 -25752625 + AluJo SINE Alu 2 282 -30 215 232 0 0 chr13 93993080 93993136 -25751762 + A-rich Low_complexity Low_complexity 4 59 0 262 292 0 0 chr13 93993423 93993488 -25751410 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1617 248 24 31 chr13 93993630 93994054 -25750844 + L1MA4 LINE L1 2 422 -5719 3206 268 83 29 chr13 93994055 93996225 -25748673 + L1MA4 LINE L1 472 2437 -3773 24 67 0 0 chr13 93996316 93996361 -25748537 + AT_rich Low_complexity Low_complexity 1 45 0 5257 202 45 15 chr13 93996495 93998175 -25746723 + L1MA4 LINE L1 4117 5844 -520 1422 153 21 12 chr13 93998177 93998419 -25746479 - MSTA LTR MaLR 0 428 185 3462 72 2 7 chr13 93998420 93998881 -25746017 - L1PA7 LINE L1 0 6154 5696 2594 105 18 0 chr13 93998881 93999263 -25745635 - L1P LINE L1 -3274 2872 2484 982 150 11 33 chr13 93999263 93999443 -25745455 - MSTA LTR MaLR -248 180 5 2155 196 36 6 chr13 93999445 93999949 -25744949 + L1MA4 LINE L1 5842 6360 -4 4300 169 17 4 chr13 93999949 94000759 -25744139 + L1MA5 LINE L1 5461 6285 -15 210 192 27 14 chr13 94000786 94000859 -25744039 + (TA)n Simple_repeat Simple_repeat 1 74 0 22 0 0 0 chr13 94000880 94000902 -25743996 + AT_rich Low_complexity Low_complexity 1 22 0 1927 142 6 38 chr13 94001116 94001433 -25743465 + AluSg SINE Alu 1 307 -3 311 335 84 40 chr13 94001460 94001785 -25743113 + L1MC4a LINE L1 4882 5238 -908 354 80 0 0 chr13 94001785 94001835 -25743063 + (TA)n Simple_repeat Simple_repeat 2 51 0 311 335 84 40 chr13 94001835 94002008 -25742890 + L1MC4a LINE L1 5238 5402 -744 274 335 35 18 chr13 94002270 94002497 -25742401 + L1MC4a LINE L1 5669 5899 -1909 2161 110 7 0 chr13 94004757 94005066 -25739832 + AluSq SINE Alu 1 311 -2 21 0 0 0 chr13 94005118 94005139 -25739759 + AT_rich Low_complexity Low_complexity 1 21 0 2219 90 0 13 chr13 94005195 94005495 -25739403 - AluSc SINE Alu -13 296 1 3512 120 84 71 chr13 94005631 94006991 -25737907 + pTR5 LTR ERV1 66 2438 0 1860 103 4 23 chr13 94007332 94007594 -25737304 + AluSq SINE Alu 39 295 -18 753 256 56 21 chr13 94007731 94007965 -25736933 - MIR SINE MIR -10 252 11 195 296 138 92 chr13 94008152 94008392 -25736506 - L2 LINE L2 -650 2664 2414 8580 217 58 45 chr13 94009761 94010915 -25733983 + L1MC1 LINE L1 18 1156 -5457 2135 118 3 7 chr13 94010915 94011221 -25733677 + AluSc SINE Alu 1 305 -4 8580 217 58 45 chr13 94011221 94011431 -25733467 + L1MC1 LINE L1 1156 1362 -5251 1985 113 0 35 chr13 94011431 94011741 -25733157 + AluSg SINE Alu 1 299 -11 8580 217 58 45 chr13 94011741 94012848 -25732050 + L1MC1 LINE L1 1362 2453 -4160 1476 220 10 23 chr13 94012848 94013157 -25731741 + AluJo SINE Alu 1 305 -7 8580 217 58 45 chr13 94013157 94013958 -25730940 + L1MC1 LINE L1 2453 3242 -3371 1950 143 0 0 chr13 94013958 94014237 -25730661 + AluSx SINE Alu 12 290 -22 8580 217 58 45 chr13 94014237 94015528 -25729370 + L1MC1 LINE L1 3242 4515 -2098 6110 151 47 16 chr13 94015528 94016277 -25728621 + Tigger3b DNA MER2_type 2 726 -2302 381 43 0 0 chr13 94016277 94016324 -25728574 + (TA)n Simple_repeat Simple_repeat 2 48 0 1996 143 0 13 chr13 94016324 94016624 -25728274 - AluY SINE Alu -15 296 1 6110 151 47 16 chr13 94016624 94017066 -25727832 + Tigger3b DNA MER2_type 725 1231 0 8580 217 58 45 chr13 94017066 94018009 -25726889 + L1MC1 LINE L1 4515 5444 -1169 1860 151 57 29 chr13 94018009 94018359 -25726539 + THE1B LTR MaLR 1 360 -4 8580 217 58 45 chr13 94018359 94019353 -25725545 + L1MC1 LINE L1 5444 6613 0 45 19 0 0 chr13 94019430 94019482 -25725416 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr13 94019713 94019734 -25725164 + AT_rich Low_complexity Low_complexity 1 21 0 429 249 55 89 chr13 94019910 94020327 -25724571 - MER57A LTR ERV1 0 403 1 263 235 29 0 chr13 94020956 94021024 -25723874 + T-rich Low_complexity Low_complexity 4 73 0 203 246 27 40 chr13 94021402 94021509 -25723389 - MIR SINE MIR -98 164 62 2157 96 3 40 chr13 94021555 94021879 -25723019 + AluSx SINE Alu 1 312 0 23 0 0 0 chr13 94022050 94022073 -25722825 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 94022287 94022313 -25722585 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr13 94023637 94023678 -25721220 + AT_rich Low_complexity Low_complexity 1 41 0 204 163 23 0 chr13 94023684 94023727 -25721171 + (TATAA)n Simple_repeat Simple_repeat 1 44 0 192 184 26 0 chr13 94023752 94023790 -25721108 - MER5A DNA MER1_type -92 97 59 25 0 0 0 chr13 94023909 94023934 -25720964 + AT_rich Low_complexity Low_complexity 1 25 0 184 232 12 12 chr13 94024622 94024646 -25720252 + GA-rich Low_complexity Low_complexity 3 26 -58 1910 199 76 9 chr13 94024646 94025078 -25719820 + LOR1b LTR ERV1 1 461 0 184 232 12 12 chr13 94025078 94025135 -25719763 + GA-rich Low_complexity Low_complexity 25 84 0 2106 111 0 7 chr13 94025290 94025588 -25719310 - AluSg SINE Alu -14 296 1 2219 112 7 0 chr13 94026509 94026814 -25718084 - AluSg SINE Alu -3 307 1 2961 159 47 12 chr13 94027121 94027245 -25717653 - MER1A DNA MER1_type -2173 527 409 201 74 0 0 chr13 94027245 94027272 -25717626 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2961 159 47 12 chr13 94027272 94027656 -25717242 - MER1A DNA MER1_type -2291 409 1 1823 178 3 20 chr13 94028373 94028715 -25716183 - MER1B DNA MER1_type -1 336 1 342 263 73 80 chr13 94029242 94029307 -25715591 - MER58A DNA MER1_type -2248 172 108 1932 111 10 20 chr13 94029307 94029605 -25715293 + AluSg SINE Alu 1 295 -15 189 0 0 0 chr13 94029605 94029626 -25715272 + (TA)n Simple_repeat Simple_repeat 1 21 0 342 263 73 80 chr13 94029626 94029696 -25715202 - MER58A DNA MER1_type -2310 110 37 2218 181 28 23 chr13 94030277 94030709 -25714189 - Tigger2a DNA MER2_type 0 434 1 4349 38 2 2 chr13 94032497 94033030 -25711868 + L1PA4 LINE L1 5620 6152 -3 393 167 0 0 chr13 94033542 94033614 -25711284 + MLT1D LTR MaLR 429 500 -5 667 161 0 70 chr13 94034026 94034169 -25710729 + L1MA6 LINE L1 6109 6241 -59 30 0 0 0 chr13 94034172 94034202 -25710696 + AT_rich Low_complexity Low_complexity 1 30 0 1562 204 38 39 chr13 94034310 94034698 -25710200 - MLT1B LTR MaLR -4 386 1 297 219 37 12 chr13 94034936 94035018 -25709880 + GA-rich Low_complexity Low_complexity 4 87 0 1397 273 42 28 chr13 94035667 94036139 -25708759 + MLT1E2 LTR MaLR 1 479 -147 1003 173 207 13 chr13 94036144 94036444 -25708454 - L1MA7 LINE L1 -6 6285 5928 * 1644 160 57 0 chr13 94036440 94036722 -25708176 + L1MA7 LINE L1 5622 5919 -372 2400 91 3 0 chr13 94036780 94037088 -25707810 - AluSc SINE Alu 0 309 1 250 203 116 14 chr13 94037088 94037157 -25707741 + MLT1E2 LTR MaLR 430 505 0 27 29 0 0 chr13 94038298 94038332 -25706566 + AT_rich Low_complexity Low_complexity 1 34 0 2025 132 3 0 chr13 94038502 94038790 -25706108 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr13 94038792 94038818 -25706080 + AT_rich Low_complexity Low_complexity 1 26 0 268 338 14 7 chr13 94039669 94039808 -25705090 - L1M4 LINE L1 -1038 5108 4969 21 82 0 0 chr13 94040801 94040850 -25704048 + AT_rich Low_complexity Low_complexity 1 49 0 1201 261 106 33 chr13 94040902 94041400 -25703498 - MLT1F1 LTR MaLR 0 567 32 234 0 0 0 chr13 94042218 94042244 -25702654 + (CA)n Simple_repeat Simple_repeat 2 27 0 260 348 96 37 chr13 94043646 94044509 -25700389 + L1MEc LINE L1 70 983 -5413 5123 195 46 26 chr13 94044586 94044783 -25700115 + L1MC1 LINE L1 4747 4939 -1394 180 0 0 0 chr13 94044783 94044803 -25700095 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5123 195 46 26 chr13 94044803 94044978 -25699920 + L1MC1 LINE L1 4939 5109 -1224 1662 183 3 37 chr13 94044978 94045300 -25699598 + AluJb SINE Alu 1 311 -1 5123 195 46 26 chr13 94045300 94045486 -25699412 + L1MC1 LINE L1 5109 5290 -1043 2255 128 28 14 chr13 94045486 94045845 -25699053 + THE1B LTR MaLR 1 364 0 10613 117 15 1 chr13 94045845 94047403 -25697495 + THE1B-int LTR MaLR 1 1580 0 2042 147 39 14 chr13 94047403 94047758 -25697140 + THE1B LTR MaLR 1 364 0 5123 195 46 26 chr13 94047758 94048748 -25696150 + L1MC1 LINE L1 5289 6333 0 451 324 42 17 chr13 94048752 94048990 -25695908 + L1MEc LINE L1 981 1224 -4981 293 47 23 0 chr13 94049295 94049338 -25695560 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 450 300 71 33 chr13 94049540 94049915 -25694983 + L1MEc LINE L1 2038 2387 -3828 1169 262 79 32 chr13 94049923 94050709 -25694189 + L1MEc LINE L1 2747 3569 -2646 628 296 95 23 chr13 94050746 94051273 -25693625 + L1MEc LINE L1 3637 4201 -2014 2007 141 0 0 chr13 94051312 94051611 -25693287 + AluSg SINE Alu 1 299 -11 623 97 21 0 chr13 94051624 94051717 -25693181 + MER51B-int LTR ERV1 4910 5004 -2533 * 8328 140 68 39 chr13 94051716 94053989 -25690909 + MER51B-int LTR ERV1 5249 7816 0 2580 87 53 0 chr13 94053990 94054347 -25690551 + MER51B LTR ERV1 1 376 -1 1628 208 47 61 chr13 94055797 94055986 -25688912 + L1 LINE L1 4848 5038 -1108 2276 86 0 7 chr13 94055986 94056289 -25688609 + AluY SINE Alu 1 301 -10 1628 208 47 61 chr13 94056289 94056609 -25688289 + L1 LINE L1 5038 5350 -796 295 212 0 0 chr13 94056683 94056746 -25688152 + L1M LINE L1 5351 5413 -755 2870 163 45 16 chr13 94056746 94057263 -25687635 + LTR39 LTR ERV1 3 534 -249 3507 300 73 35 chr13 94057286 94059333 -25685565 - L1M2 LINE L1 -4244 2107 2 212 303 87 56 chr13 94059904 94060099 -25684799 - L2 LINE L2 -1 3312 3112 3487 224 102 93 chr13 94060674 94062411 -25682487 + MER52A LTR ERV1 1 1754 -1 780 262 77 63 chr13 94062518 94062869 -25682029 - LTR52 LTR ERVL -41 380 25 400 314 78 29 chr13 94064419 94064455 -25680443 + MIR SINE MIR 46 79 -183 1801 158 127 16 chr13 94064455 94064840 -25680058 - MSTA LTR MaLR 0 428 1 400 314 78 29 chr13 94064840 94065007 -25679891 + MIR SINE MIR 79 259 -3 4993 138 19 0 chr13 94065066 94065889 -25679009 - L1MA2 LINE L1 -2 6302 5464 253 338 30 30 chr13 94067662 94067795 -25677103 + LTR16C LTR ERVL 359 491 0 671 257 64 26 chr13 94068004 94068421 -25676477 + L1MEc LINE L1 22 477 -5919 * 1912 263 43 28 chr13 94068414 94068796 -25676102 + L1M4 LINE L1 4141 4516 -1630 2105 120 0 0 chr13 94068796 94069095 -25675803 + AluSq SINE Alu 1 299 -14 1912 263 43 28 chr13 94069095 94069506 -25675392 + L1M4 LINE L1 4516 4946 -1200 25 31 0 0 chr13 94069606 94069638 -25675260 + AT_rich Low_complexity Low_complexity 1 32 0 317 238 66 145 chr13 94120025 94120252 -25624646 + MER58 DNA MER1_type 2 2415 -5 247 274 0 27 chr13 94120539 94120612 -25624286 - MIR SINE MIR -118 144 74 25 83 0 0 chr13 94121268 94121328 -25623570 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr13 94122133 94122154 -25622744 + AT_rich Low_complexity Low_complexity 1 21 0 1887 148 0 0 chr13 94122964 94123292 -25621606 - AluSx SINE Alu 0 328 1 305 263 114 18 chr13 94123677 94123791 -25621107 - MLT1K LTR MaLR -247 341 217 11852 85 2 4 chr13 94124054 94127039 -25617859 - L1PA7 LINE L1 -3 6151 3168 476 279 31 0 chr13 94127207 94127336 -25617562 + MER3 DNA MER1_type 11 143 -66 189 0 0 0 chr13 94127424 94127445 -25617453 + (TA)n Simple_repeat Simple_repeat 2 22 0 4905 36 0 0 chr13 94127446 94128025 -25616873 - L1PA5 LINE L1 -14 6140 5562 595 112 0 0 chr13 94128313 94128402 -25616496 - AluSq SINE Alu -12 301 213 1050 138 119 29 chr13 94130201 94130411 -25614487 - MER30 DNA MER1_type 0 230 2 1617 160 13 45 chr13 94130430 94130742 -25614156 + AluJo SINE Alu 1 302 -10 23 33 0 0 chr13 94131064 94131094 -25613804 + AT_rich Low_complexity Low_complexity 1 30 0 1382 226 159 33 chr13 94131127 94131587 -25613311 + MLT1E1 LTR MaLR 137 654 0 44 0 0 0 chr13 94131609 94131653 -25613245 + AT_rich Low_complexity Low_complexity 1 44 0 249 330 67 57 chr13 94131722 94131931 -25612967 - MIR SINE MIR -50 212 2 1969 137 20 3 chr13 94135240 94135539 -25609359 - AluSp SINE Alu -9 304 1 1442 159 12 8 chr13 94135766 94136018 -25608880 - THE1C LTR MaLR -2 373 121 8028 120 53 36 chr13 94136121 94137448 -25607450 - THE1C-int LTR MaLR -231 1349 1 2352 143 0 26 chr13 94137448 94137833 -25607065 - THE1C LTR MaLR 0 375 1 309 267 43 43 chr13 94137880 94137996 -25606902 - MLT1L LTR MaLR -373 242 127 1181 154 0 6 chr13 94138660 94138842 -25606056 - AluSq SINE Alu -110 203 23 1361 142 37 8 chr13 94141193 94141461 -25603437 - L1MA5A LINE L1 -4 6293 6018 29 0 0 0 chr13 94141490 94141519 -25603379 + AT_rich Low_complexity Low_complexity 1 29 0 1475 240 145 38 chr13 94141559 94142063 -25602835 + MLT1F1 LTR MaLR 4 561 -6 2403 91 0 0 chr13 94142183 94142492 -25602406 + AluSc SINE Alu 1 309 0 1760 135 50 73 chr13 94143402 94143786 -25601112 + THE1C LTR MaLR 1 375 0 2252 99 7 0 chr13 94143849 94144142 -25600756 + AluSp SINE Alu 1 295 -18 206 339 0 0 chr13 94144229 94144288 -25600610 + MIR SINE MIR 18 76 -132 2641 175 6 16 chr13 94146384 94146881 -25598017 - L1MA7 LINE L1 -239 6052 5561 2424 261 39 28 chr13 94146985 94148011 -25596887 - L1M2 LINE L1 -4222 2129 1112 1363 226 7 26 chr13 94148011 94148316 -25596582 - AluJo SINE Alu -11 301 3 2424 261 39 28 chr13 94148316 94148459 -25596439 - L1M2 LINE L1 -5239 1112 972 2292 283 43 27 chr13 94148823 94149570 -25595328 - L1M2 LINE L1 -5521 760 2 5206 146 152 92 chr13 94149868 94151469 -25593429 + pTR5 LTR ERV1 741 2438 0 233 313 12 12 chr13 94151911 94151991 -25592907 + MIR SINE MIR 170 249 -13 23 54 0 0 chr13 94153341 94153378 -25591520 + AT_rich Low_complexity Low_complexity 1 37 0 181 347 0 0 chr13 94153489 94153538 -25591360 - L2 LINE L2 -240 3073 3025 260 120 20 0 chr13 94153733 94153783 -25591115 + CT-rich Low_complexity Low_complexity 1 51 0 234 0 0 0 chr13 94153809 94153835 -25591063 + (CA)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr13 94154621 94154648 -25590250 + AT_rich Low_complexity Low_complexity 1 27 0 501 139 58 0 chr13 94154734 94154820 -25590078 - Tigger5 DNA MER2_type 0 2323 2233 28 48 0 0 chr13 94154915 94154957 -25589941 + AT_rich Low_complexity Low_complexity 1 42 0 2230 113 0 0 chr13 94155296 94155597 -25589301 - AluSc SINE Alu -8 301 1 1016 260 27 60 chr13 94155819 94156188 -25588710 - MLT1E2 LTR MaLR -250 376 20 548 196 0 0 chr13 94156859 94156951 -25587947 - MER5A DNA MER1_type -1 188 97 2354 208 11 99 chr13 94158074 94158738 -25586160 + MER77 LTR ERV1 1 605 0 428 311 54 0 chr13 94159279 94159427 -25585471 - MER91B DNA MER1_type -1 189 34 27 53 5 0 chr13 94159939 94160033 -25584865 + AT_rich Low_complexity Low_complexity 1 55 0 714 111 0 8 chr13 94160161 94160278 -25584620 - L1PA13 LINE L1 -14 6149 6034 300 337 127 17 chr13 94160622 94160922 -25583976 - L1ME LINE L1 -573 5589 5257 324 185 141 0 chr13 94161134 94161226 -25583672 - L1MC3 LINE L1 -326 7459 7355 583 235 17 17 chr13 94161226 94161405 -25583493 + L1MC1 LINE L1 5131 5309 -837 544 190 52 17 chr13 94161412 94161528 -25583370 + FLAM_A SINE Alu 18 137 -5 4247 195 36 44 chr13 94161540 94162555 -25582343 + L1MC1 LINE L1 5293 6299 -34 1395 264 191 48 chr13 94162612 94163032 -25581866 + L1MEc LINE L1 2033 2392 -3823 2216 4 0 0 chr13 94163032 94163270 -25581628 + AluYb8 SINE Alu 71 308 -10 1395 264 191 48 chr13 94163270 94164563 -25580335 + L1MEc LINE L1 2392 3954 -2261 * 2712 241 66 32 chr13 94164558 94166131 -25578767 + L1MEc LINE L1 4227 5865 -370 27 0 0 0 chr13 94167790 94167817 -25577081 + AT_rich Low_complexity Low_complexity 1 27 0 185 282 155 10 chr13 94168036 94168139 -25576759 + MIR3 SINE MIR 90 207 -1 257 276 69 55 chr13 94168337 94168482 -25576416 - MIR SINE MIR 0 262 116 21 0 0 0 chr13 94169957 94169978 -25574920 + AT_rich Low_complexity Low_complexity 1 21 0 1595 73 5 23 chr13 94170042 94170260 -25574638 - AluSg/x SINE Alu -18 291 78 478 65 0 0 chr13 94170265 94170327 -25574571 + Alu SINE Alu 14 75 -243 23 78 0 0 chr13 94170546 94170597 -25574301 + AT_rich Low_complexity Low_complexity 1 51 0 23 68 0 0 chr13 94170696 94170740 -25574158 + AT_rich Low_complexity Low_complexity 1 44 0 214 343 41 0 chr13 94170773 94170846 -25574052 - MIR3 SINE MIR -48 160 85 186 133 0 0 chr13 94171738 94171768 -25573130 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 266 247 96 0 chr13 94173320 94173393 -25571505 - MLT1L LTR MaLR -535 80 1 3526 179 37 16 chr13 94173769 94174495 -25570403 + L1MC1 LINE L1 5460 6200 -133 12226 251 59 57 chr13 94174496 94180063 -25564835 + L1PA12 LINE L1 841 6473 -1111 225 97 0 0 chr13 94180063 94180094 -25564804 + U2 snRNA snRNA 5 35 -153 12226 251 59 57 chr13 94180094 94180286 -25564612 + L1PA12 LINE L1 6473 6663 -921 1001 196 24 4 chr13 94181263 94181513 -25563385 + L1MA4 LINE L1 6040 6294 -6 1154 211 0 0 chr13 94181978 94182196 -25562702 + L1MC1 LINE L1 6098 6315 -18 312 345 35 23 chr13 94182562 94182736 -25562162 + MLT1J LTR MaLR 224 399 -112 30 52 0 39 chr13 94183005 94183082 -25561816 + AT_rich Low_complexity Low_complexity 1 74 0 2001 145 0 0 chr13 94183672 94183968 -25560930 + AluSx SINE Alu 1 296 -16 7468 31 0 0 chr13 94184222 94185471 -25559427 - L1PA3 LINE L1 -3 6152 4900 284 329 99 48 chr13 94186853 94187105 -25557793 + L2 LINE L2 2953 3217 -96 25 0 0 0 chr13 94187682 94187707 -25557191 + AT_rich Low_complexity Low_complexity 1 25 0 2123 97 0 4 chr13 94188790 94189069 -25555829 - AluSq SINE Alu -24 289 12 327 352 62 16 chr13 94190427 94190620 -25554278 - MIR3 SINE MIR -1 207 6 189 0 0 0 chr13 94190774 94190795 -25554103 + (T)n Simple_repeat Simple_repeat 1 21 0 8474 239 25 22 chr13 94193765 94196567 -25548331 + L1PA15 LINE L1 1532 4346 -2451 7344 197 11 14 chr13 94196574 94198070 -25546828 + L1PA15 LINE L1 4467 5966 -850 2999 158 14 0 chr13 94198070 94198577 -25546321 + MER75 DNA T2_type 1 514 0 7344 197 11 14 chr13 94198577 94199420 -25545478 + L1PA15 LINE L1 5966 6810 -6 21 36 0 0 chr13 94199420 94199448 -25545450 + AT_rich Low_complexity Low_complexity 1 28 0 423 248 43 12 chr13 94199449 94199610 -25545288 - MER114 LTR ERV -373 275 110 47 97 0 0 chr13 94199846 94199991 -25544907 + AT_rich Low_complexity Low_complexity 1 145 0 27 73 0 0 chr13 94200012 94200067 -25544831 + AT_rich Low_complexity Low_complexity 1 55 0 291 173 19 0 chr13 94200076 94200128 -25544770 - MER94 DNA DNA -81 53 1 356 304 89 9 chr13 94200387 94200499 -25544399 - LTR28 LTR ERV1 0 1020 900 1489 242 75 105 chr13 94200541 94201347 -25543551 - LTR1B LTR ERV1 -39 981 2 565 327 106 6 chr13 94201350 94201699 -25543199 - MLT1J2 LTR MaLR 0 450 67 2067 151 28 11 chr13 94201712 94202070 -25542828 - THE1B LTR MaLR 0 364 1 9622 121 37 40 chr13 94202076 94203641 -25541257 - THE1B-int LTR MaLR -7 1573 13 1952 167 25 17 chr13 94203649 94204003 -25540895 - THE1B LTR MaLR -7 357 1 1978 149 0 0 chr13 94205188 94205496 -25539402 + AluSc SINE Alu 1 308 -1 1726 164 29 10 chr13 94205506 94205817 -25539081 + MER7A DNA MER2_type 32 346 0 26 0 0 0 chr13 94207675 94207701 -25537197 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr13 94207878 94207905 -25536993 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr13 94210507 94210537 -25534361 + AT_rich Low_complexity Low_complexity 1 30 0 1652 154 38 8 chr13 94211364 94211630 -25533268 + AluJo SINE Alu 1 274 -38 1995 148 116 11 chr13 94211680 94212058 -25532840 - MSTA LTR MaLR -1 427 10 346 288 78 26 chr13 94212175 94212481 -25532417 - L1ME4a LINE L1 -74 6047 5726 238 243 95 14 chr13 94213469 94213543 -25531355 + MLT1A2 LTR MaLR 1 80 -294 * 772 183 6 49 chr13 94213540 94213704 -25531194 + MLT1A2 LTR MaLR 218 374 0 243 310 40 0 chr13 94214874 94214974 -25529924 - MIR SINE MIR -112 150 47 1517 141 60 60 chr13 94215031 94215329 -25529569 - AluJb SINE Alu -14 298 1 28 48 0 0 chr13 94215461 94215503 -25529395 + AT_rich Low_complexity Low_complexity 1 42 0 191 233 0 27 chr13 94215892 94215965 -25528933 + GA-rich Low_complexity Low_complexity 2 72 0 685 237 62 6 chr13 94215975 94216152 -25528746 + MLT1C LTR MaLR 6 192 -275 2553 179 64 76 chr13 94216155 94216891 -25528007 + LTR8A LTR ERV1 1 727 0 790 259 72 12 chr13 94216938 94217189 -25527709 + MLT1C LTR MaLR 202 467 0 189 0 0 0 chr13 94217699 94217720 -25527178 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1848 133 217 3 chr13 94217824 94218206 -25526692 + MER4C LTR ERV1 2 465 0 912 224 54 14 chr13 94218829 94219035 -25525863 - MER67C LTR ERV1 -307 403 189 233 321 75 0 chr13 94219035 94219141 -25525757 + LTR1B LTR ERV1 1 114 -712 1978 202 100 141 chr13 94219146 94219993 -25524905 + LTR28 LTR ERV1 208 1020 0 623 200 95 0 chr13 94219993 94220172 -25524726 - MER67D LTR ERV1 -514 196 2 255 294 44 37 chr13 94220769 94220905 -25523993 - MIR SINE MIR 0 262 126 1616 246 58 49 chr13 94220941 94221474 -25523424 - LTR29 LTR ERV1 0 622 85 775 157 14 14 chr13 94221478 94221625 -25523273 + LOR1a LTR ERV1 1 147 -350 2090 137 7 59 chr13 94221726 94222135 -25522763 - L1PA12 LINE L1 -204 5964 5577 279 0 0 0 chr13 94223379 94223410 -25521488 + (A)n Simple_repeat Simple_repeat 1 31 0 6877 72 0 0 chr13 94224466 94225551 -25519347 + L1PA6 LINE L1 5064 6148 -6 2151 55 0 81 chr13 94225553 94225903 -25518995 + AluY SINE Alu 1 325 0 21 36 0 0 chr13 94226016 94226044 -25518854 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr13 94226381 94226415 -25518483 + AT_rich Low_complexity Low_complexity 1 34 0 1606 220 34 43 chr13 94226481 94226927 -25517971 - L1MA7 LINE L1 -58 6233 5792 1522 150 11 4 chr13 94226918 94227178 -25517720 + L1MA7 LINE L1 5532 5793 -498 * 405 360 81 15 chr13 94227663 94228144 -25516754 + L1ME3A LINE L1 5428 5940 -230 21 82 0 0 chr13 94228549 94228598 -25516300 + AT_rich Low_complexity Low_complexity 1 49 0 3112 158 30 10 chr13 94228689 94229266 -25515632 - L1MC1 LINE L1 -11 6322 5735 290 320 47 40 chr13 94229327 94229477 -25515421 - MLT1G1 LTR MaLR -199 396 246 486 331 42 11 chr13 94230374 94230655 -25514243 - MLT1G1 LTR MaLR -261 334 1 241 355 0 0 chr13 94231887 94231963 -25512935 + L2 LINE L2 3223 3298 -15 2121 190 3 0 chr13 94232543 94232907 -25511991 + LOR1a LTR ERV1 133 497 0 510 141 0 35 chr13 94232908 94232993 -25511905 - LTR29 LTR ERV1 -540 82 1 25 0 0 0 chr13 94233401 94233426 -25511472 + AT_rich Low_complexity Low_complexity 1 25 0 1273 291 55 17 chr13 94233521 94233995 -25510903 - L1ME1 LINE L1 -17 6149 5658 1812 147 36 33 chr13 94234119 94234426 -25510472 - AluSx SINE Alu -4 308 1 897 193 62 21 chr13 94234458 94234606 -25510292 - L1MA9 LINE L1 -1 6311 6148 282 95 0 0 chr13 94234606 94234648 -25510250 + (TG)n Simple_repeat Simple_repeat 2 43 0 897 193 62 21 chr13 94234648 94234742 -25510156 - L1MA9 LINE L1 -164 6148 6059 1534 239 110 4 chr13 94234795 94235296 -25509602 - L1ME1 LINE L1 -1221 4925 4372 310 291 126 41 chr13 94235312 94235374 -25509524 + L1M4 LINE L1 3805 3860 -2286 1737 164 79 20 chr13 94235374 94235727 -25509171 + THE1C LTR MaLR 2 375 0 310 291 126 41 chr13 94235727 94236077 -25508821 + L1M4 LINE L1 3860 4252 -1894 231 119 0 0 chr13 94237163 94237205 -25507693 + LTR66 LTR ERVL 398 439 -171 203 156 0 0 chr13 94237240 94237272 -25507626 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 1930 135 0 3 chr13 94237712 94238027 -25506871 - AluSx SINE Alu 0 314 1 232 193 18 0 chr13 94238420 94238477 -25506421 - L1MA4A LINE L1 -9 6294 6237 2577 175 6 2 chr13 94238620 94239116 -25505782 - L1MA4 LINE L1 -12 6288 5791 257 80 88 26 chr13 94239138 94239251 -25505647 + (TA)n Simple_repeat Simple_repeat 1 120 0 232 81 0 0 chr13 94239281 94239318 -25505580 + L1M1 LINE L1 5783 5819 -481 1418 156 21 0 chr13 94239342 94239585 -25505313 - L1MA4 LINE L1 -515 5785 5538 2842 176 15 44 chr13 94239598 94240252 -25504646 - L1MA4 LINE L1 -1409 4737 4103 21 0 0 0 chr13 94240295 94240316 -25504582 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 94240827 94240855 -25504043 + AT_rich Low_complexity Low_complexity 1 28 0 3895 195 113 59 chr13 94242205 94243172 -25501726 + LTR28 LTR ERV1 2 1020 0 1730 171 42 0 chr13 94243338 94243624 -25501274 + AluSx SINE Alu 1 298 -14 1268 310 72 15 chr13 94244244 94244718 -25500180 + L1M3d LINE L1 11 511 -5380 1942 188 136 0 chr13 94244726 94245168 -25499730 + L1M3d LINE L1 690 1191 -4700 1086 215 15 38 chr13 94245173 94245434 -25499464 - MLT1A1-int LTR MaLR -1479 256 2 1843 187 25 6 chr13 94245436 94245794 -25499104 - MLT1A1 LTR MaLR 0 365 1 2009 154 0 0 chr13 94246309 94246608 -25498290 + AluSq SINE Alu 1 299 -14 29 0 0 0 chr13 94247136 94247165 -25497733 + AT_rich Low_complexity Low_complexity 1 29 0 304 306 41 8 chr13 94247341 94247462 -25497436 - MER94 DNA DNA -9 125 1 700 296 66 16 chr13 94247486 94247729 -25497169 + MLT1J LTR MaLR 96 350 -161 245 316 36 50 chr13 94247785 94247924 -25496974 - MLT1J LTR MaLR -50 461 325 434 243 0 47 chr13 94247930 94248037 -25496861 + MER5A DNA MER1_type 9 110 -79 269 323 77 57 chr13 94249391 94249639 -25495259 + MIR SINE MIR 7 259 -3 281 270 96 35 chr13 94249674 94249789 -25495109 + MER58 DNA MER1_type 1 122 -93 1632 198 23 23 chr13 94249871 94250214 -25494684 + MLT1A2 LTR MaLR 32 374 0 260 71 48 0 chr13 94250307 94250349 -25494549 + GA-rich Low_complexity Low_complexity 2 45 0 1822 151 19 44 chr13 94250604 94250968 -25493930 - THE1A LTR MaLR 0 355 1 4538 103 11 0 chr13 94250977 94251606 -25493292 - THE1A-int LTR MaLR -9 1571 936 582 313 39 31 chr13 94251611 94252027 -25492871 - L1MEc LINE L1 -4951 1445 1027 215 244 0 0 chr13 94252029 94252070 -25492828 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 990 304 16 58 chr13 94252074 94252525 -25492373 - L1MEc LINE L1 -5560 836 405 216 306 0 42 chr13 94252815 94252887 -25492011 - MER5B DNA MER1_type -109 69 1 25 31 0 0 chr13 94253064 94253096 -25491802 + AT_rich Low_complexity Low_complexity 1 32 0 227 321 28 9 chr13 94253142 94253248 -25491650 - HAL1 LINE L1 -890 1617 1510 2012 121 0 4 chr13 94253617 94253897 -25491001 + AluY SINE Alu 1 279 -32 279 0 0 0 chr13 94253899 94253930 -25490968 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr13 94254129 94254150 -25490748 + AT_rich Low_complexity Low_complexity 1 21 0 259 330 139 17 chr13 94254833 94255006 -25489892 - L1MC/D LINE L1 -2210 5575 5382 25 0 0 0 chr13 94255949 94255974 -25488924 + AT_rich Low_complexity Low_complexity 1 25 0 22 88 0 0 chr13 94256538 94256595 -25488303 + AT_rich Low_complexity Low_complexity 1 57 0 2166 123 0 0 chr13 94257188 94257490 -25487408 + AluSg SINE Alu 1 302 -8 441 301 56 15 chr13 94257701 94257943 -25486955 + L1MC4 LINE L1 6721 6850 -935 2741 147 51 53 chr13 94258512 94259050 -25485848 + MER61E LTR ERV1 1 612 0 1979 141 3 0 chr13 94259147 94259454 -25485444 - AluSx SINE Alu 0 308 1 21 0 0 0 chr13 94259463 94259484 -25485414 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 94260123 94260146 -25484752 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 94260269 94260299 -25484599 + AT_rich Low_complexity Low_complexity 1 30 0 1078 211 13 64 chr13 94261174 94261472 -25483426 - AluJo SINE Alu -24 288 6 21 0 0 0 chr13 94261885 94261906 -25482992 + AT_rich Low_complexity Low_complexity 1 21 0 201 330 19 47 chr13 94262262 94262368 -25482530 + L2 LINE L2 1529 1631 -1683 351 0 0 0 chr13 94262484 94262523 -25482375 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr13 94263145 94263166 -25481732 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 94263428 94263449 -25481449 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr13 94264113 94264160 -25480738 + AT_rich Low_complexity Low_complexity 1 47 0 1821 272 158 18 chr13 94264848 94266035 -25478863 - Charlie2a DNA MER1_type -43 2819 1466 414 298 214 4 chr13 94266132 94266394 -25478504 - Charlie2a DNA MER1_type -2465 317 1 22 35 0 0 chr13 94267760 94267789 -25477109 + AT_rich Low_complexity Low_complexity 1 29 0 2878 166 4 70 chr13 94267792 94268280 -25476618 + L1PA5 LINE L1 5684 6139 -15 194 0 39 0 chr13 94268280 94268306 -25476592 + (TA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 94268451 94268474 -25476424 + AT_rich Low_complexity Low_complexity 1 23 0 480 206 144 0 chr13 94269469 94269615 -25475283 - L1MA8 LINE L1 -4 6287 6121 3763 152 107 16 chr13 94269756 94270513 -25474385 - LTR1B LTR ERV1 0 826 1 1171 262 60 31 chr13 94270839 94271293 -25473605 - MLT1C LTR MaLR 0 467 1 302 352 93 38 chr13 94271531 94271821 -25473077 + L3 LINE CR1 1070 1375 -202 1222 273 68 61 chr13 94272876 94273682 -25471216 + L1M4 LINE L1 3256 4131 -2015 1731 153 17 10 chr13 94273682 94273982 -25470916 + AluSx SINE Alu 1 302 -10 1222 273 68 61 chr13 94273982 94274323 -25470575 + L1M4 LINE L1 4131 4468 -1678 216 200 0 0 chr13 94274501 94274551 -25470347 + GA-rich Low_complexity Low_complexity 3 52 0 346 372 49 28 chr13 94275062 94275449 -25469449 + L1M4 LINE L1 2429 2823 -3323 470 270 67 19 chr13 94275512 94275871 -25469027 + L1M4 LINE L1 2898 3273 -2873 246 254 256 77 chr13 94275913 94276315 -25468583 + HAL1 LINE L1 37 510 -1997 499 345 74 45 chr13 94276372 94276775 -25468123 + L2 LINE L2 2847 3261 -52 246 164 0 16 chr13 94276970 94277031 -25467867 + L1MC4 LINE L1 6644 6703 -1339 278 272 0 0 chr13 94277352 94277433 -25467465 + (TA)n Simple_repeat Simple_repeat 2 82 0 238 255 49 20 chr13 94277705 94277807 -25467091 - L1MEd LINE L1 -5336 783 679 359 409 25 30 chr13 94277893 94278130 -25466768 - L1MEd LINE L1 -5503 616 381 353 241 98 9 chr13 94279043 94279155 -25465743 + L1ME LINE L1 5539 5660 -461 510 261 54 41 chr13 94279590 94279925 -25464973 - LTR35 LTR ERV1 0 676 350 2390 117 20 25 chr13 94280188 94280546 -25464352 - LTR18A LTR ERVL -1 356 1 27193 166 13 4 chr13 94280547 94285111 -25459787 - HERVL18 LTR ERVL 0 6047 1441 528 169 0 0 chr13 94285111 94285200 -25459698 - LTR18A LTR ERVL -268 89 1 234 246 107 33 chr13 94286084 94286206 -25458692 - MIR SINE MIR 0 262 132 2106 113 7 7 chr13 94286450 94286743 -25458155 + AluSx SINE Alu 1 293 -19 238 187 40 0 chr13 94286876 94286951 -25457947 + (TA)n Simple_repeat Simple_repeat 2 79 0 21 57 0 0 chr13 94286957 94286992 -25457906 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr13 94287065 94287106 -25457792 + AT_rich Low_complexity Low_complexity 1 41 0 377 275 28 56 chr13 94287155 94287297 -25457601 - L2 LINE L2 -733 2581 2444 434 239 77 81 chr13 94287407 94287666 -25457232 + MLT1I LTR MaLR 82 339 -70 1941 89 0 0 chr13 94287667 94287913 -25456985 + AluSx SINE Alu 30 275 -37 270 0 0 0 chr13 94287914 94287944 -25456954 + (TC)n Simple_repeat Simple_repeat 1 30 0 342 206 0 0 chr13 94287945 94288018 -25456880 + (TA)n Simple_repeat Simple_repeat 2 74 0 350 289 0 0 chr13 94288020 94288110 -25456788 - L1MC4 LINE L1 -1339 6703 6614 1340 219 20 51 chr13 94288406 94288798 -25456100 + MLT1D LTR MaLR 126 505 0 448 231 29 10 chr13 94289156 94289260 -25455638 - MER5B DNA MER1_type -71 107 2 189 345 18 0 chr13 94289897 94289952 -25454946 - MER5B DNA MER1_type -122 56 1 654 222 64 6 chr13 94292643 94292814 -25452084 - MER58A DNA MER1_type -4 220 40 525 32 0 0 chr13 94294219 94294282 -25450616 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 490 246 179 70 chr13 94294408 94294721 -25450177 + L1ME4a LINE L1 5564 5910 -211 364 291 121 32 chr13 94295259 94295572 -25449326 + LTR16C LTR ERVL 151 491 0 405 321 107 18 chr13 94296053 94296494 -25448404 + L1ME LINE L1 4547 5035 -1111 410 336 159 9 chr13 94296645 94296984 -25447914 + L1ME LINE L1 5263 5652 -2133 229 265 66 29 chr13 94297083 94297219 -25447679 + L1ME LINE L1 5776 5916 -250 320 312 108 0 chr13 94297718 94297875 -25447023 - MIR SINE MIR -42 220 47 251 390 8 8 chr13 94298027 94298145 -25446753 + L2 LINE L2 3154 3271 -1 21 0 0 0 chr13 94299719 94299740 -25445158 + AT_rich Low_complexity Low_complexity 1 21 0 41 0 0 0 chr13 94299779 94299820 -25445078 + AT_rich Low_complexity Low_complexity 1 41 0 343 356 120 15 chr13 94299872 94300139 -25444759 - L3 LINE CR1 -264 1313 1019 324 412 34 7 chr13 94300254 94300402 -25444496 + MER91A DNA MER1_type 3 154 -42 428 320 23 46 chr13 94300468 94300727 -25444171 + MLT1H LTR MaLR 63 315 -234 255 284 80 0 chr13 94300894 94300982 -25443916 + MLT1H LTR MaLR 454 548 -1 1432 118 10 0 chr13 94301223 94301418 -25443480 + AluSg/x SINE Alu 107 303 -7 29 28 0 0 chr13 94302190 94302226 -25442672 + AT_rich Low_complexity Low_complexity 1 36 0 615 210 34 0 chr13 94303266 94303385 -25441513 + AluJo SINE Alu 13 135 -177 2342 109 0 0 chr13 94303716 94304019 -25440879 + AluSq SINE Alu 1 303 -10 2243 115 0 0 chr13 94305572 94305877 -25439021 + AluSx SINE Alu 1 305 -7 1741 260 134 47 chr13 94305959 94306747 -25438151 + L1M4b LINE L1 19 875 -5984 1026 112 11 6 chr13 94306750 94306929 -25437969 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1740 189 3 6 chr13 94306947 94307429 -25437469 - AluSx SINE Alu 0 481 1 2225 86 21 0 chr13 94307504 94307795 -25437103 + AluSp SINE Alu 17 313 0 488 208 87 27 chr13 94307796 94307945 -25436953 + L1M4b LINE L1 898 1055 -5804 1372 171 8 50 chr13 94308222 94308507 -25436391 - AluSx SINE Alu 0 312 39 259 284 91 11 chr13 94309175 94309263 -25435635 - MIR SINE MIR -134 128 34 369 344 28 11 chr13 94309297 94309477 -25435421 + L2 LINE L2 2218 2400 -914 369 262 71 28 chr13 94309549 94309690 -25435208 - MIR SINE MIR 0 262 116 2200 152 22 0 chr13 94309693 94310048 -25434850 - THE1B LTR MaLR -1 363 1 9825 127 43 3 chr13 94310048 94311567 -25433331 - THE1B-int LTR MaLR 0 1580 1 2136 134 31 14 chr13 94311567 94311925 -25432973 - THE1B LTR MaLR 0 364 1 359 342 106 43 chr13 94312023 94312465 -25432433 + L2 LINE L2 2508 2977 -337 268 100 0 0 chr13 94312484 94312524 -25432374 - MLT2A2 LTR ERVL -11 442 403 252 161 65 0 chr13 94312601 94312663 -25432235 + MLT2B1 LTR ERVL 455 520 0 225 0 0 0 chr13 94312774 94312799 -25432099 + (TA)n Simple_repeat Simple_repeat 2 26 0 521 162 0 68 chr13 94312852 94313043 -25431855 + (TA)n Simple_repeat Simple_repeat 2 179 0 2690 80 22 15 chr13 94313043 94313444 -25431454 - MLT2A1 LTR ERVL -40 404 1 194 388 12 12 chr13 94313619 94313704 -25431194 + L2 LINE L2 3137 3221 -51 288 53 0 0 chr13 94313769 94313807 -25431091 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 192 358 54 67 chr13 94314965 94315031 -25429867 + L2 LINE L2 2597 2662 -652 1846 145 125 43 chr13 94315031 94315430 -25429468 - MSTB1 LTR MaLR 0 432 1 192 358 54 67 chr13 94315430 94315603 -25429295 + L2 LINE L2 2662 2833 -481 336 299 96 84 chr13 94315743 94316078 -25428820 - MLT1L LTR MaLR -253 362 24 570 216 159 11 chr13 94317313 94317489 -25427409 - MIR SINE MIR -30 232 31 216 307 0 0 chr13 94317656 94317731 -25427167 + L2 LINE L2 2716 2790 -524 1999 140 76 20 chr13 94317988 94318331 -25426567 + THE1B LTR MaLR 1 362 -2 10634 112 6 3 chr13 94318333 94319893 -25425005 + THE1B-int LTR MaLR 1 1566 -14 1527 174 35 17 chr13 94319900 94320188 -25424710 + THE1B LTR MaLR 71 363 -1 7639 22 2 0 chr13 94320549 94321746 -25423152 + L1PA3 LINE L1 5000 6195 0 287 258 38 101 chr13 94321850 94322009 -25422889 - MIR SINE MIR -15 247 99 319 304 62 25 chr13 94322321 94322482 -25422416 - MIR SINE MIR -37 225 59 323 263 88 26 chr13 94322858 94322972 -25421926 + L2 LINE L2 3190 3310 -3 317 336 43 0 chr13 94323413 94323553 -25421345 - MIR SINE MIR -14 248 103 291 291 23 0 chr13 94323637 94323723 -25421175 - MER5A DNA MER1_type -95 94 7 1305 184 4 21 chr13 94324281 94324520 -25420378 - AluJb SINE Alu -25 287 53 4410 248 42 34 chr13 94324996 94326398 -25418500 + L1PA12 LINE L1 9 2481 -5103 312 205 79 0 chr13 94326553 94326680 -25418218 + L1PA12 LINE L1 2355 2491 -5093 5671 102 50 5 chr13 94326685 94328520 -25416378 + L1PA11 LINE L1 4306 6170 -4 794 189 0 94 chr13 94328536 94328716 -25416182 + FRAM SINE Alu 1 163 -3 761 189 0 94 chr13 94328544 94328724 -25416174 + AluJo/FRAM SINE Alu 145 307 -5 225 30 30 0 chr13 94329172 94329205 -25415693 + (TTTTA)n Simple_repeat Simple_repeat 2 90 0 2076 103 7 0 chr13 94329205 94329487 -25415411 - AluSx SINE Alu -1 316 1 212 313 81 20 chr13 94329794 94329893 -25415005 + MIR SINE MIR 102 206 -56 2059 127 3 0 chr13 94330149 94330441 -25414457 - AluY SINE Alu -18 293 1 42510 35 22 2 chr13 94331025 94337087 -25407811 + L1PA3 LINE L1 1 6155 0 1649 166 76 71 chr13 94337504 94337703 -25407195 + L1MA6 LINE L1 5864 6061 -239 1726 165 7 29 chr13 94337703 94338012 -25406886 - AluJo SINE Alu -9 303 2 1649 166 76 71 chr13 94338012 94338235 -25406663 + L1MA6 LINE L1 6061 6288 -12 261 233 27 0 chr13 94338289 94338362 -25406536 + (TA)n Simple_repeat Simple_repeat 1 75 0 28 61 0 0 chr13 94338371 94338420 -25406478 + AT_rich Low_complexity Low_complexity 1 49 0 238 315 172 45 chr13 94339262 94339570 -25405328 + L2 LINE L2 2858 3204 -109 635 260 12 23 chr13 94339570 94339743 -25405155 - MER5B DNA MER1_type -1 177 7 195 356 0 0 chr13 94339776 94339849 -25405049 + L2 LINE L2 3168 3240 -32 526 248 16 8 chr13 94340059 94340188 -25404710 + MIR SINE MIR 69 198 -64 21 100 0 0 chr13 94340493 94340563 -25404335 + AT_rich Low_complexity Low_complexity 1 70 0 2143 111 0 3 chr13 94341750 94342047 -25402851 - AluSq SINE Alu -17 296 1 447 306 46 25 chr13 94344451 94344647 -25400251 + MIR SINE MIR 52 251 -11 27 29 0 0 chr13 94344648 94344682 -25400216 + AT_rich Low_complexity Low_complexity 1 34 0 192 125 0 0 chr13 94344741 94344773 -25400125 + (TG)n Simple_repeat Simple_repeat 1 32 0 1096 143 20 25 chr13 94345363 94345559 -25399339 - L1MA4 LINE L1 -26 6274 6080 13530 150 47 10 chr13 94346375 94348706 -25396192 - Tigger1 DNA MER2_type -1 2417 1 688 189 0 0 chr13 94349275 94349402 -25395496 - Tigger1 DNA MER2_type -1935 483 357 22 0 0 0 chr13 94349635 94349657 -25395241 + AT_rich Low_complexity Low_complexity 1 22 0 1065 237 142 49 chr13 94349835 94350148 -25394750 + MLT1E1 LTR MaLR 185 550 -104 2438 101 50 0 chr13 94350148 94350486 -25394412 + THE1A LTR MaLR 1 355 0 1065 237 142 49 chr13 94350486 94350602 -25394296 + MLT1E1 LTR MaLR 550 654 0 233 187 13 0 chr13 94351279 94351354 -25393544 + (TA)n Simple_repeat Simple_repeat 1 76 0 2460 69 0 3 chr13 94351988 94352292 -25392606 - AluY SINE Alu -8 303 1 274 310 53 33 chr13 94354415 94354660 -25390238 + L1ME LINE L1 5460 5709 -412 1459 224 48 39 chr13 94356619 94357078 -25387820 - MLT1C LTR MaLR 0 467 5 376 296 86 41 chr13 94357087 94357330 -25387568 + LTR40a LTR ERVL 265 518 -1 2272 51 37 0 chr13 94359767 94360061 -25384837 - AluY SINE Alu -6 305 1 25 75 0 0 chr13 94360440 94360493 -25384405 + AT_rich Low_complexity Low_complexity 1 53 0 642 236 22 62 chr13 94360533 94360758 -25384140 - MER20 DNA MER1_type 0 219 4 1953 168 89 8 chr13 94361221 94361615 -25383283 - MSTB LTR MaLR 0 426 1 507 266 0 63 chr13 94362733 94362844 -25382054 - L2 LINE L2 -1 3312 3210 2353 70 27 0 chr13 94362844 94363142 -25381756 - AluY SINE Alu -5 306 1 507 266 0 63 chr13 94363142 94363173 -25381725 - L2 LINE L2 -103 3210 3179 421 292 118 15 chr13 94363571 94363766 -25381132 - MLT1J LTR MaLR -296 215 1 396 0 0 0 chr13 94364631 94364675 -25380223 + (CA)n Simple_repeat Simple_repeat 2 45 0 1433 206 30 10 chr13 94364873 94364989 -25379909 + AluJb SINE Alu 6 118 -194 423 0 0 0 chr13 94364989 94365036 -25379862 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1433 206 30 10 chr13 94365036 94365220 -25379678 + AluJb SINE Alu 118 312 0 21 36 0 0 chr13 94365304 94365332 -25379566 + AT_rich Low_complexity Low_complexity 1 28 0 333 23 0 0 chr13 94365785 94365828 -25379070 - L1PA13 LINE L1 -2 6161 6119 1574 231 49 0 chr13 94366402 94366748 -25378150 + MLT1A1 LTR MaLR 1 363 -2 805 172 172 0 chr13 94366750 94366930 -25377968 + MLT1A1-int LTR MaLR 1 211 -1524 3082 229 24 61 chr13 94366932 94367773 -25377125 + MLT1A1-int LTR MaLR 360 1169 -566 1079 178 60 0 chr13 94367773 94367958 -25376940 + MLT1A1 LTR MaLR 170 365 0 319 298 9 6 chr13 94368214 94368329 -25376569 - MER5A DNA MER1_type -6 183 58 6308 196 31 59 chr13 94369469 94369635 -25375263 - L1MA10 LINE L1 -1 6333 6164 279 0 0 0 chr13 94369635 94369666 -25375232 + (TG)n Simple_repeat Simple_repeat 2 32 0 6308 196 31 59 chr13 94369666 94370405 -25374493 - L1MA10 LINE L1 -170 6164 5406 2752 95 0 11 chr13 94370405 94370784 -25374114 - THE1C LTR MaLR 0 375 1 6308 196 31 59 chr13 94370784 94371203 -25373695 - L1MA10 LINE L1 -928 5406 4977 2159 124 0 7 chr13 94371203 94371509 -25373389 + AluSq SINE Alu 1 304 -9 6308 196 31 59 chr13 94371509 94372813 -25372085 - L1MA10 LINE L1 -1357 4977 3912 2225 104 7 0 chr13 94372813 94373112 -25371786 + AluY SINE Alu 1 301 -10 6308 196 31 59 chr13 94373112 94373755 -25371143 - L1MA10 LINE L1 -2422 3912 3253 2589 114 39 5 chr13 94373762 94374149 -25370749 + MLT2A1 LTR ERVL 1 400 -44 270 96 77 19 chr13 94374204 94374256 -25370642 + MLT2A1 LTR ERVL 399 453 0 974 235 56 7 chr13 94374257 94374563 -25370335 - L1MA10 LINE L1 -2897 3249 2929 737 128 34 34 chr13 94374579 94374728 -25370170 - L1MA6 LINE L1 0 6300 6152 326 376 61 0 chr13 94374915 94375112 -25369786 + L1ME LINE L1 5595 5803 -318 227 279 0 0 chr13 94376010 94376078 -25368820 + (TA)n Simple_repeat Simple_repeat 2 69 0 296 366 64 37 chr13 94376593 94376970 -25367928 - L2 LINE L2 -80 3233 2847 209 33 33 0 chr13 94378077 94378107 -25366791 + (TA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr13 94378276 94378297 -25366601 + AT_rich Low_complexity Low_complexity 1 21 0 247 337 25 12 chr13 94378297 94378460 -25366438 + L1M4 LINE L1 5468 5632 -546 267 390 60 53 chr13 94379504 94379786 -25365112 - L2 LINE L2 -41 3231 2948 2027 177 8 18 chr13 94380117 94380507 -25364391 + L1MC1 LINE L1 5937 6322 -11 21 0 0 0 chr13 94380507 94380528 -25364370 + AT_rich Low_complexity Low_complexity 1 21 0 288 70 0 0 chr13 94381336 94381379 -25363519 + (TG)n Simple_repeat Simple_repeat 2 44 0 2134 163 14 35 chr13 94381964 94382029 -25362869 - MLT2D LTR ERVL 0 414 349 495 33 0 0 chr13 94382029 94382090 -25362808 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2134 163 14 35 chr13 94382090 94382447 -25362451 - MLT2D LTR ERVL -65 349 1 357 311 44 71 chr13 94384690 94384915 -25359983 - MIR SINE MIR -30 232 14 224 358 45 0 chr13 94386441 94386508 -25358390 - MIR3 SINE MIR -53 155 86 21 36 0 0 chr13 94387821 94387849 -25357049 + AT_rich Low_complexity Low_complexity 1 28 0 244 208 0 57 chr13 94388018 94388071 -25356827 + L2 LINE L2 3263 3312 -1 203 302 193 33 chr13 94388104 94388316 -25356582 - MIR SINE MIR -11 251 6 2145 128 50 8 chr13 94388501 94388861 -25356037 + THE1C LTR MaLR 1 375 0 563 311 71 53 chr13 94391190 94391627 -25353271 - HAL1 LINE L1 -813 1694 1250 611 251 43 89 chr13 94391627 94391997 -25352901 - L1ME3A LINE L1 -1 6169 5817 288 248 64 16 chr13 94392002 94392127 -25352771 - L1ME3A LINE L1 -764 5478 5348 736 257 72 48 chr13 94392140 94392553 -25352345 - L1ME3A LINE L1 -844 5302 4875 2249 75 10 3 chr13 94392553 94392848 -25352050 - AluY SINE Alu -14 297 1 736 257 72 48 chr13 94392848 94392909 -25351989 - L1ME3A LINE L1 -1271 4875 4817 608 313 74 7 chr13 94392973 94393270 -25351628 + L1MEc LINE L1 159 475 -5921 320 291 48 37 chr13 94393279 94393468 -25351430 + L1MEc LINE L1 529 719 -5677 411 250 146 18 chr13 94393474 94393694 -25351204 + L1MEc LINE L1 764 1011 -5385 585 317 52 29 chr13 94394114 94394668 -25350230 + ERVL LTR ERVL 3743 4322 -1332 489 348 43 19 chr13 94394813 94395181 -25349717 + ERVL LTR ERVL 4539 4915 -849 1088 285 43 7 chr13 94395227 94395532 -25349366 + LTR16A LTR ERVL 134 449 -1 1634 171 7 40 chr13 94395563 94395862 -25349036 + AluJo SINE Alu 3 291 -21 26 0 0 0 chr13 94395988 94396014 -25348884 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr13 94396443 94396489 -25348409 + AT_rich Low_complexity Low_complexity 1 46 0 2177 113 5 54 chr13 94397454 94397825 -25347073 + THE1A LTR MaLR 3 355 0 10809 101 17 8 chr13 94397826 94398323 -25346575 + THE1A-int LTR MaLR 2 493 -1087 2431 50 0 0 chr13 94398323 94398634 -25346264 + AluY SINE Alu 1 311 0 10809 101 17 8 chr13 94398634 94399697 -25345201 + THE1A-int LTR MaLR 493 1578 -2 2188 132 11 11 chr13 94399699 94400054 -25344844 + THE1A LTR MaLR 1 355 0 1783 175 14 23 chr13 94400718 94401067 -25343831 + MER47A DNA MER2_type 20 365 -1 955 161 5 34 chr13 94401077 94401282 -25343616 - L1 LINE L1 -1181 4965 4767 8565 93 25 4 chr13 94401340 94403373 -25341525 - L1PA7 LINE L1 -1 6153 4095 8356 123 15 4 chr13 94403373 94404997 -25339901 + L1P LINE L1 3482 5171 -975 1951 187 25 0 chr13 94404993 94405388 -25339510 - L1 LINE L1 -1370 4776 4372 * 1171 190 37 0 chr13 94405389 94405631 -25339267 + L1MA8 LINE L1 6029 6279 -12 28 91 0 0 chr13 94405631 94405708 -25339190 + AT_rich Low_complexity Low_complexity 1 77 0 912 221 18 28 chr13 94405837 94406054 -25338844 - MLT1B LTR MaLR 0 390 176 2026 129 10 10 chr13 94406267 94406569 -25338329 - AluSx SINE Alu 0 312 11 368 177 13 13 chr13 94407175 94407254 -25337644 - LTR54 LTR ERV1 0 510 432 * 870 232 31 32 chr13 94407234 94407532 -25337366 - MER57A LTR ERV1 -58 345 63 2065 143 0 16 chr13 94407768 94408082 -25336816 - AluSx SINE Alu 0 312 4 1057 177 30 55 chr13 94408229 94408319 -25336579 + MLT2D LTR ERVL 1 92 -322 2126 138 0 0 chr13 94408319 94408631 -25336267 - AluSx SINE Alu 0 312 1 1057 177 30 55 chr13 94408631 94408777 -25336121 + MLT2D LTR ERVL 92 231 -183 183 250 36 18 chr13 94409041 94409097 -25335801 - MIR SINE MIR -67 141 85 199 282 184 19 chr13 94410211 94410314 -25334584 - MIR SINE MIR -26 236 117 * 2879 286 65 76 chr13 94410269 94412226 -25332672 + L2 LINE L2 1372 3312 -1 2264 74 40 0 chr13 94412440 94412736 -25332162 - AluY SINE Alu -3 308 1 232 312 64 9 chr13 94412784 94412893 -25332005 - L2 LINE L2 -1288 2026 1912 285 302 142 0 chr13 94412962 94413068 -25331830 + L2 LINE L2 2658 2778 -536 31 26 0 0 chr13 94413107 94413145 -25331753 + AT_rich Low_complexity Low_complexity 1 38 0 395 225 45 0 chr13 94413682 94413771 -25331127 - MER58C DNA MER1_type 0 215 123 227 100 0 25 chr13 94413911 94413951 -25330947 + (TCC)n Simple_repeat Simple_repeat 2 40 0 511 274 0 1 chr13 94413953 94414088 -25330810 - MER58 DNA MER1_type -81 134 1 1148 279 148 2 chr13 94414246 94414651 -25330247 + LTR16B LTR ERVL 1 464 0 1179 169 46 109 chr13 94414733 94415147 -25329751 - MLT1B LTR MaLR -2 388 1 216 211 19 19 chr13 94415387 94415439 -25329459 + CT-rich Low_complexity Low_complexity 2 53 0 25 0 0 0 chr13 94415813 94415838 -25329060 + AT_rich Low_complexity Low_complexity 1 25 0 2449 42 0 29 chr13 94416006 94416315 -25328583 + AluY SINE Alu 1 300 -11 1891 313 70 45 chr13 94416588 94417972 -25326926 + L2 LINE L2 1862 3292 -21 185 321 37 18 chr13 94417992 94418101 -25326797 - MIR SINE MIR -111 151 41 204 132 0 26 chr13 94418102 94418140 -25326758 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1362 223 37 0 chr13 94418811 94418984 -25325914 - AluJo SINE Alu -7 305 117 194 0 0 37 chr13 94418984 94419011 -25325887 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1362 223 37 0 chr13 94419011 94419110 -25325788 - AluJo SINE Alu -195 117 23 219 88 0 0 chr13 94420568 94420602 -25324296 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5716 149 13 8 chr13 94421351 94422024 -25322874 + L1PB1 LINE L1 4613 5281 -870 3410 71 16 2 chr13 94422024 94422462 -25322436 - MLT2A1 LTR ERVL 0 444 1 5716 149 13 8 chr13 94422462 94422957 -25321941 + L1PB1 LINE L1 5281 5796 -355 261 0 0 0 chr13 94422957 94422986 -25321912 + (TA)n Simple_repeat Simple_repeat 1 29 0 5716 149 13 8 chr13 94422986 94423342 -25321556 + L1PB1 LINE L1 5796 6149 -2 247 352 94 0 chr13 94423435 94423563 -25321335 - MIR SINE MIR -35 227 88 355 308 35 0 chr13 94423854 94423997 -25320901 - L2 LINE L2 0 3313 3166 1349 212 48 61 chr13 94424274 94424729 -25320169 + MLT2B1 LTR ERVL 1 414 0 873 212 27 0 chr13 94424790 94424974 -25319924 - MER5A DNA MER1_type 0 189 1 23 33 0 0 chr13 94426626 94426656 -25318242 + AT_rich Low_complexity Low_complexity 1 30 0 1770 172 4 4 chr13 94426657 94426936 -25317962 - AluJo SINE Alu -31 281 3 241 313 40 30 chr13 94427445 94427544 -25317354 - L2 LINE L2 -4 3268 3169 242 326 102 48 chr13 94429216 94429510 -25315388 - L2 LINE L2 -3 3310 3001 723 379 60 29 chr13 94429715 94430501 -25314397 - L2 LINE L2 -528 2786 1977 1826 143 0 56 chr13 94431489 94431811 -25313087 - AluSq SINE Alu -3 310 7 200 313 0 60 chr13 94431817 94431900 -25312998 - L2 LINE L2 -7 3265 3188 288 154 0 0 chr13 94432276 94432328 -25312570 + T-rich Low_complexity Low_complexity 1 52 0 544 264 39 58 chr13 94433203 94433411 -25311487 + MIR SINE MIR 37 240 -22 21 57 0 0 chr13 94434736 94434771 -25310127 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 94435316 94435351 -25309547 + AT_rich Low_complexity Low_complexity 1 35 0 447 303 109 49 chr13 94435378 94435725 -25309173 - MLT1I LTR MaLR -10 399 32 208 318 125 11 chr13 94435778 94435866 -25309032 - MIR SINE MIR -67 141 44 353 338 50 14 chr13 94436185 94436324 -25308574 + L2 LINE L2 3122 3265 -7 282 197 14 56 chr13 94436902 94436973 -25307925 - MIR SINE MIR -74 134 66 302 264 6 39 chr13 94438191 94438369 -25306529 + Charlie7 DNA MER1_type 2366 2537 -75 334 135 19 0 chr13 94438695 94438747 -25306151 - MER4A LTR ERV1 -351 313 261 652 121 0 10 chr13 94438747 94438846 -25306052 - MER4A LTR ERV1 -566 98 1 1713 106 0 72 chr13 94438855 94439148 -25305750 + AluSx SINE Alu 41 312 0 611 143 0 10 chr13 94439178 94439276 -25305622 + MER4A LTR ERV1 1 97 -567 1875 152 6 19 chr13 94439277 94439625 -25305273 + MER4A LTR ERV1 263 664 0 255 233 0 0 chr13 94441316 94441359 -25303539 + L3 LINE CR1 1527 1569 -8 22 0 0 0 chr13 94442607 94442629 -25302269 + AT_rich Low_complexity Low_complexity 1 22 0 262 418 16 8 chr13 94442686 94442808 -25302090 + L2 LINE L2 3134 3256 -16 566 287 4 88 chr13 94442917 94443178 -25301720 - MIR SINE MIR -21 241 3 395 347 68 8 chr13 94443781 94444046 -25300852 + L2 LINE L2 2243 2523 -791 2192 87 17 0 chr13 94444304 94444602 -25300296 + AluSp SINE Alu 1 303 -10 181 385 0 0 chr13 94444673 94444738 -25300160 + L2 LINE L2 3154 3218 -54 229 325 13 13 chr13 94444773 94444850 -25300048 - L2 LINE L2 -1354 1960 1884 959 206 235 0 chr13 94447535 94447774 -25297124 - MER7A DNA MER2_type -2692 346 32 450 0 0 0 chr13 94447774 94447824 -25297074 + (TA)n Simple_repeat Simple_repeat 2 51 0 959 206 235 0 chr13 94447824 94447865 -25297033 - MER7A DNA MER2_type -3006 32 2 25 83 0 0 chr13 94448694 94448754 -25296144 + AT_rich Low_complexity Low_complexity 1 60 0 420 242 30 0 chr13 94449008 94449107 -25295791 - U6 snRNA snRNA -4 103 2 4759 163 54 21 chr13 94449195 94450686 -25294212 - L1MA7 LINE L1 -10 7700 6158 927 161 85 15 chr13 94450686 94450885 -25294013 - Tigger1 DNA MER2_type 0 2418 2206 910 158 0 48 chr13 94450878 94451043 -25293855 - Tigger1 DNA MER2_type -2261 157 1 * 10451 205 44 17 chr13 94451047 94453326 -25291572 - L1MA7 LINE L1 -1410 6155 3797 2311 84 0 10 chr13 94453326 94453635 -25291263 - AluY SINE Alu -5 306 1 10451 205 44 17 chr13 94453635 94453858 -25291040 - L1MA7 LINE L1 -3768 3797 3582 315 225 56 0 chr13 94453948 94454019 -25290879 + MLT1A2 LTR MaLR 298 372 -2 809 267 27 107 chr13 94454023 94454283 -25290615 + MLT1A2-int LTR MaLR 3 338 -1172 226 313 0 0 chr13 94454351 94454415 -25290483 + MLT1A2-int LTR MaLR 676 739 -996 24 0 0 0 chr13 94454505 94454529 -25290369 + AT_rich Low_complexity Low_complexity 1 24 0 2215 127 31 6 chr13 94454606 94454961 -25289937 - THE1B LTR MaLR 0 364 1 191 321 114 53 chr13 94455092 94455223 -25289675 + MIR SINE MIR 53 191 -71 23 68 0 0 chr13 94455284 94455328 -25289570 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr13 94455457 94455494 -25289404 + AT_rich Low_complexity Low_complexity 1 37 0 41 0 0 0 chr13 94455926 94455967 -25288931 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr13 94456597 94456623 -25288275 + AT_rich Low_complexity Low_complexity 1 26 0 238 294 0 0 chr13 94457248 94457316 -25287582 + CT-rich Low_complexity Low_complexity 1 68 0 31 68 0 0 chr13 94457377 94457436 -25287462 + AT_rich Low_complexity Low_complexity 1 59 0 225 297 20 30 chr13 94459672 94459773 -25285125 + MIR3 SINE MIR 15 114 -94 28 71 0 0 chr13 94460106 94460162 -25284736 + AT_rich Low_complexity Low_complexity 1 56 0 204 342 51 8 chr13 94460410 94460527 -25284371 - MIR SINE MIR -10 252 131 2066 147 0 0 chr13 94461187 94461499 -25283399 - AluSx SINE Alu 0 312 1 260 299 26 0 chr13 94461499 94461576 -25283322 + MER69 DNA AcHobo 4 82 -2444 415 246 16 53 chr13 94461634 94461903 -25282995 - L1ME2 LINE L1 -30 6068 4548 856 94 31 13 chr13 94462276 94462435 -25282463 + CT-rich Low_complexity Low_complexity 1 162 0 462 174 0 64 chr13 94462443 94462552 -25282346 - FLAM_A SINE Alu -11 131 30 294 286 22 0 chr13 94462561 94462652 -25282246 - L1ME2 LINE L1 -5888 182 90 1130 276 131 20 chr13 94462743 94463699 -25281199 + MER69 DNA AcHobo 108 2526 0 1582 181 3 16 chr13 94463837 94464141 -25280757 + AluJo SINE Alu 4 303 -9 895 254 45 38 chr13 94464624 94464888 -25280010 - LTR40a LTR ERVL 0 519 254 513 73 0 0 chr13 94464906 94464974 -25279924 - MADE1 DNA Mariner -1 79 12 * 544 253 122 35 chr13 94464956 94465185 -25279713 - LTR40a LTR ERVL -270 249 1 350 238 82 49 chr13 94465185 94465307 -25279591 - MIR SINE MIR -125 137 12 225 387 21 35 chr13 94465680 94465822 -25279076 - MIR SINE MIR -114 148 9 2250 104 13 0 chr13 94466632 94466940 -25277958 + AluSp SINE Alu 1 312 -1 300 197 0 55 chr13 94467009 94467136 -25277762 + (TA)n Simple_repeat Simple_repeat 2 121 0 22 115 0 0 chr13 94470123 94470236 -25274662 + AT_rich Low_complexity Low_complexity 1 113 0 26 0 0 0 chr13 94470364 94470390 -25274508 + AT_rich Low_complexity Low_complexity 1 26 0 451 305 149 7 chr13 94470767 94471036 -25273862 - L2 LINE L2 -30 3283 2977 220 314 51 15 chr13 94471583 94471720 -25273178 + L2 LINE L2 2478 2619 -695 1170 272 95 28 chr13 94474114 94474607 -25270291 - MLT1F LTR MaLR -6 536 11 2088 116 3 10 chr13 94474664 94474966 -25269932 + AluSp SINE Alu 1 300 -13 1799 96 19 70 chr13 94475325 94475637 -25269261 - THE1C LTR MaLR -79 296 1 21 71 0 0 chr13 94476113 94476155 -25268743 + AT_rich Low_complexity Low_complexity 1 42 0 300 164 62 78 chr13 94476385 94476513 -25268385 + L1ME LINE L1 862 987 -5083 2149 106 0 7 chr13 94476645 94476938 -25267960 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr13 94477362 94477383 -25267515 + AT_rich Low_complexity Low_complexity 1 21 0 937 184 13 10 chr13 94477390 94477695 -25267203 - L1MA7 LINE L1 -14 6277 5866 428 346 83 8 chr13 94477850 94478090 -25266808 - L2 LINE L2 -506 2808 2551 1090 206 0 10 chr13 94478139 94478371 -25266527 - AluJo SINE Alu 0 314 85 2165 127 0 3 chr13 94478441 94478749 -25266149 + AluSx SINE Alu 1 307 -5 252 306 65 16 chr13 94478916 94479040 -25265858 - MIR SINE MIR -61 201 72 27321 116 9 9 chr13 94480145 94486576 -25258322 + L1PA7 LINE L1 8 6464 -5 21 0 0 0 chr13 94486595 94486616 -25258282 + AT_rich Low_complexity Low_complexity 1 21 0 361 177 0 21 chr13 94489168 94489264 -25255634 + (TA)n Simple_repeat Simple_repeat 1 94 0 1845 121 35 29 chr13 94489916 94490262 -25254636 - L1MA3 LINE L1 0 6305 5958 294 317 78 21 chr13 94490390 94490532 -25254366 + L2 LINE L2 3121 3270 -2 1938 137 57 33 chr13 94492900 94493266 -25251632 - THE1C LTR MaLR 0 375 1 5427 144 12 16 chr13 94493266 94494201 -25250697 - THE1C-int LTR MaLR 0 1580 650 1722 132 66 28 chr13 94494202 94494561 -25250337 - THE1C LTR MaLR -2 394 1 364 242 25 56 chr13 94494896 94495057 -25249841 - MLT1J LTR MaLR -61 450 295 1127 266 8 20 chr13 94495088 94495441 -25249457 - MLT1A2 LTR MaLR 0 374 26 607 295 43 0 chr13 94495697 94495907 -25248991 + MER58A DNA MER1_type 5 223 -1 22 0 0 0 chr13 94498301 94498323 -25246575 + AT_rich Low_complexity Low_complexity 1 22 0 207 227 0 0 chr13 94498395 94498439 -25246459 - L2 LINE L2 0 3313 3270 374 301 285 0 chr13 94499675 94499868 -25245030 + MIR SINE MIR 15 262 0 219 36 0 0 chr13 94502594 94502622 -25242276 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 23 68 0 0 chr13 94502747 94502791 -25242107 + AT_rich Low_complexity Low_complexity 1 44 0 1807 124 21 59 chr13 94503731 94503927 -25240971 - THE1B LTR MaLR 0 364 185 2134 122 0 7 chr13 94503927 94504257 -25240641 - AluSq SINE Alu 0 313 1 1807 124 21 59 chr13 94504257 94504399 -25240499 - THE1B LTR MaLR -179 185 39 245 121 48 84 chr13 94504402 94504485 -25240413 + (CATAT)n Simple_repeat Simple_repeat 4 83 0 646 343 54 30 chr13 94504862 94505382 -25239516 + L2 LINE L2 2752 3284 -29 3840 111 18 6 chr13 94505382 94506011 -25238887 - L1MA2 LINE L1 0 6304 5669 646 343 54 30 chr13 94506011 94506038 -25238860 + L2 LINE L2 3284 3309 -4 1806 235 60 18 chr13 94506225 94506723 -25238175 + LTR40a LTR ERVL 1 519 0 2512 105 68 21 chr13 94506802 94507230 -25237668 + LTR7 LTR ERV1 1 448 -2 18286 93 54 6 chr13 94507232 94510083 -25234815 + HERVH LTR ERV1 1 2987 -4726 787 138 41 0 chr13 94510077 94510222 -25234676 + HERVH LTR ERV1 3140 3290 -4423 * 2931 113 40 4 chr13 94510221 94510698 -25234200 + HERVH LTR ERV1 3500 3993 -3720 3945 145 22 1 chr13 94510700 94511349 -25233549 + HERVH LTR ERV1 4488 5149 -2564 1325 114 18 14 chr13 94511350 94511569 -25233329 + HERVH LTR ERV1 5600 5819 -1894 2328 93 45 13 chr13 94511569 94511947 -25232951 + HERVH LTR ERV1 7324 7713 0 2571 101 58 25 chr13 94511947 94512381 -25232517 + LTR7 LTR ERV1 1 448 -2 298 349 23 43 chr13 94512969 94513227 -25231671 - L2 LINE L2 -15 3298 3046 1535 201 8 64 chr13 94513346 94513367 -25231531 - MLT1B LTR MaLR 0 390 369 2286 165 57 5 chr13 94513367 94513774 -25231124 + MSTA LTR MaLR 1 428 0 1535 201 8 64 chr13 94513774 94514141 -25230757 - MLT1B LTR MaLR -21 369 24 234 240 27 0 chr13 94515345 94515420 -25229478 + L1ME LINE L1 5724 5800 -362 3502 55 0 7 chr13 94515811 94516262 -25228636 - LTR7 LTR ERV1 -2 448 1 2392 77 45 13 chr13 94516262 94516640 -25228258 - HERVH LTR ERV1 0 7713 7324 1266 126 28 0 chr13 94516640 94516854 -25228044 - HERVH LTR ERV1 -1894 5819 5600 4055 146 0 1 chr13 94516855 94517518 -25227380 - HERVH LTR ERV1 -2564 5149 4488 3107 115 4 6 chr13 94517520 94518023 -25226875 - HERVH LTR ERV1 -3720 3993 3492 958 107 7 0 chr13 94518013 94518163 -25226735 - HERVH LTR ERV1 -4423 3290 3140 * 15817 105 15 13 chr13 94518142 94521067 -25223831 - HERVH LTR ERV1 -4718 2995 1 3329 65 7 7 chr13 94521069 94521517 -25223381 - LTR7 LTR ERV1 -2 448 1 205 182 0 0 chr13 94521646 94521679 -25223219 - MIR SINE MIR -82 126 94 414 304 43 0 chr13 94521962 94522123 -25222775 + MIR SINE MIR 57 224 -38 241 271 127 0 chr13 94524587 94524705 -25220193 + L1ME LINE L1 5535 5667 -454 21 36 0 0 chr13 94524815 94524843 -25220055 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr13 94525535 94525570 -25219328 + AT_rich Low_complexity Low_complexity 1 35 0 266 286 0 0 chr13 94526108 94526171 -25218727 + (CA)n Simple_repeat Simple_repeat 1 63 0 196 406 32 19 chr13 94528150 94528305 -25216593 - L2 LINE L2 -14 3258 3102 273 226 0 0 chr13 94529101 94529154 -25215744 - MIR SINE MIR -129 133 81 291 280 87 27 chr13 94529519 94529669 -25215229 + MIR SINE MIR 83 241 -21 492 159 0 23 chr13 94530085 94530173 -25214725 + MER44D DNA MER2_type 3 358 -251 586 183 7 7 chr13 94530717 94530854 -25214044 + L1MA6 LINE L1 6162 6298 -2 290 100 43 14 chr13 94532209 94532225 -25212673 + (TA)n Simple_repeat Simple_repeat 2 16 -57 267 31 0 0 chr13 94532225 94532257 -25212641 + (CA)n Simple_repeat Simple_repeat 2 33 0 290 100 43 14 chr13 94532257 94532310 -25212588 + (TA)n Simple_repeat Simple_repeat 16 73 0 1088 221 107 65 chr13 94532327 94532711 -25212187 - MLT2D LTR ERVL -7 407 8 552 284 88 0 chr13 94533450 94533644 -25211254 + MER58A DNA MER1_type 1 211 -13 301 252 117 36 chr13 94533658 94533769 -25211129 - L2 LINE L2 -6 3307 3188 1615 167 83 6 chr13 94533820 94533963 -25210935 - L1MA9 LINE L1 0 6312 6181 180 0 0 0 chr13 94533963 94533983 -25210915 + (TG)n Simple_repeat Simple_repeat 1 20 0 1615 167 83 6 chr13 94533983 94534175 -25210723 - L1MA9 LINE L1 -131 6181 5951 1912 109 31 17 chr13 94534243 94534537 -25210361 + AluSx SINE Alu 1 298 -14 651 200 25 56 chr13 94535823 94535983 -25208915 - Tigger2 DNA MER2_type 0 2718 2564 * 1302 106 25 0 chr13 94535978 94536177 -25208721 - Tigger2 DNA MER2_type -2508 210 7 1726 180 3 13 chr13 94536890 94537196 -25207702 - AluJb SINE Alu -9 303 1 5280 157 28 5 chr13 94537427 94538351 -25206547 - L1MA6 LINE L1 -4 6296 5352 3939 175 15 14 chr13 94538353 94539153 -25205745 + L1MA6 LINE L1 4529 5329 -817 240 35 0 0 chr13 94540312 94540341 -25204557 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 733 225 212 25 chr13 94540343 94540579 -25204319 - AluSx SINE Alu -32 280 1 543 330 143 20 chr13 94540863 94541163 -25203735 + L2 LINE L2 96 432 -2882 275 372 67 12 chr13 94541931 94542095 -25202803 + L2 LINE L2 338 510 -2804 1686 166 3 20 chr13 94542101 94542402 -25202496 - MER1B DNA MER1_type 0 339 44 294 328 23 35 chr13 94542414 94542585 -25202313 + L2 LINE L2 525 693 -2621 741 286 77 4 chr13 94542606 94542840 -25202058 - MIR SINE MIR 0 262 12 236 329 154 25 chr13 94542857 94543137 -25201761 - L3 LINE CR1 -306 1271 956 765 298 42 4 chr13 94543868 94544106 -25200792 + MIR SINE MIR 10 256 -6 185 320 48 75 chr13 94544132 94544279 -25200619 + MIR SINE MIR 92 234 -28 252 308 22 33 chr13 94546739 94546830 -25198068 - MER5B DNA MER1_type -7 171 82 21 71 0 0 chr13 94547099 94547141 -25197757 + AT_rich Low_complexity Low_complexity 1 42 0 225 47 70 0 chr13 94547633 94547676 -25197222 + (CA)n Simple_repeat Simple_repeat 1 46 0 673 158 44 0 chr13 94548070 94548184 -25196714 - FAM SINE Alu -55 130 12 2568 140 23 23 chr13 94548400 94548592 -25196306 + MSTA LTR MaLR 1 192 -236 1530 42 0 5 chr13 94548592 94548784 -25196114 + L1PA7 LINE L1 5960 6150 -4 2568 140 23 23 chr13 94548784 94549019 -25195879 + MSTA LTR MaLR 191 428 0 216 0 0 0 chr13 94549050 94549074 -25195824 + (CA)n Simple_repeat Simple_repeat 2 25 0 231 303 11 22 chr13 94550481 94550570 -25194328 + L1MC/D LINE L1 5622 5709 -2099 244 318 0 0 chr13 94550721 94550787 -25194111 - MIR SINE MIR -3 259 194 186 133 0 0 chr13 94551026 94551056 -25193842 + (TAA)n Simple_repeat Simple_repeat 3 32 0 309 51 0 0 chr13 94551418 94551457 -25193441 + (CA)n Simple_repeat Simple_repeat 1 39 0 264 247 35 12 chr13 94553528 94553613 -25191285 + GA-rich Low_complexity Low_complexity 3 89 0 25 0 0 0 chr13 94554088 94554113 -25190785 + AT_rich Low_complexity Low_complexity 1 25 0 235 266 63 77 chr13 94555626 94555769 -25189129 - MIR SINE MIR -64 198 58 1875 143 7 0 chr13 94556094 94556424 -25188474 + AluSx SINE Alu 1 332 0 2110 110 3 0 chr13 94559338 94559646 -25185252 - L1P LINE L1 -4254 1892 1584 * 11984 110 30 3 chr13 94559636 94561492 -25183406 + L1P3 LINE L1 4 1889 -4562 974 179 14 29 chr13 94563576 94563783 -25181115 - MER96B DNA MER1_type? -181 236 33 26 30 0 0 chr13 94564334 94564367 -25180531 + AT_rich Low_complexity Low_complexity 1 33 0 1803 154 50 28 chr13 94565491 94565854 -25179044 + THE1C LTR MaLR 1 371 -4 1800 185 9 6 chr13 94567475 94567805 -25177093 - L1PA16 LINE L1 -2 6164 5834 1161 157 105 16 chr13 94567785 94568033 -25176865 + L1PA16 LINE L1 5560 5829 -337 * 667 228 61 103 chr13 94568485 94568892 -25176006 - MER110A LTR ERV1 -19 472 98 21 0 0 0 chr13 94569165 94569186 -25175712 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 94569253 94569282 -25175616 + AT_rich Low_complexity Low_complexity 1 29 0 210 189 19 0 chr13 94570011 94570064 -25174834 + A-rich Low_complexity Low_complexity 5 58 0 584 242 0 0 chr13 94570135 94570255 -25174643 + FRAM SINE Alu 41 160 -16 1692 169 10 20 chr13 94570471 94570772 -25174126 + AluSx SINE Alu 1 298 -14 1903 176 115 3 chr13 94570847 94571222 -25173676 + MSTB LTR MaLR 9 425 -1 283 286 82 44 chr13 94571400 94571606 -25173292 + HAL1 LINE L1 1466 1679 -828 23 0 0 0 chr13 94571875 94571898 -25173000 + AT_rich Low_complexity Low_complexity 1 23 0 304 225 56 0 chr13 94572532 94572621 -25172277 + L1M4 LINE L1 2452 2545 -3601 963 274 65 10 chr13 94572621 94572927 -25171971 - L2 LINE L2 -1279 2035 1713 232 249 78 127 chr13 94573055 94573300 -25171598 - L2 LINE L2 -1606 1708 1476 1636 118 12 67 chr13 94573303 94573634 -25171264 + L1M2c LINE L1 1851 2163 -4626 1734 238 59 13 chr13 94573650 94574192 -25170706 - L1M4 LINE L1 -3097 3049 2483 1323 212 145 103 chr13 94574287 94575182 -25169716 - LTR1B LTR ERV1 0 1020 8 210 294 29 15 chr13 94575682 94575750 -25169148 - MIR SINE MIR -190 72 4 204 253 13 27 chr13 94576178 94576253 -25168645 + GA-rich Low_complexity Low_complexity 3 76 0 1704 185 3 31 chr13 94578404 94578723 -25166175 + AluJo SINE Alu 2 311 -1 238 265 83 30 chr13 94578858 94578990 -25165908 - MIR SINE MIR -13 249 111 26 93 0 0 chr13 94579318 94579393 -25165505 + AT_rich Low_complexity Low_complexity 1 75 0 25 51 0 0 chr13 94579532 94579571 -25165327 + AT_rich Low_complexity Low_complexity 1 39 0 244 183 0 28 chr13 94579595 94579666 -25165232 + (TATATG)n Simple_repeat Simple_repeat 1 69 0 4660 126 23 7 chr13 94579892 94580629 -25164269 - L1PA16 LINE L1 -9 6157 5409 25 51 0 0 chr13 94581603 94581642 -25163256 + AT_rich Low_complexity Low_complexity 1 39 0 392 357 102 40 chr13 94582620 94583248 -25161650 - L2 LINE L2 -574 2740 2074 506 287 41 28 chr13 94583299 94583657 -25161241 - MARNA DNA Mariner -74 512 91 1403 185 4 19 chr13 94584090 94584349 -25160549 + AluJo SINE Alu 32 286 -26 189 0 0 0 chr13 94584372 94584393 -25160505 + (TAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 94584401 94584423 -25160475 + AT_rich Low_complexity Low_complexity 1 22 0 317 287 115 57 chr13 94586472 94586803 -25158095 - MLT1I LTR MaLR 0 409 60 191 226 65 108 chr13 94586976 94587015 -25157883 - MIR SINE MIR -57 205 166 1624 114 3 123 chr13 94587015 94587187 -25157711 + AluJb SINE Alu 1 115 -187 1586 56 0 0 chr13 94587187 94587385 -25157513 + AluY SINE Alu 112 309 -2 1624 114 3 123 chr13 94587385 94587545 -25157353 + AluJb SINE Alu 115 293 -9 191 226 65 108 chr13 94587545 94587598 -25157300 - MIR SINE MIR -96 166 117 353 301 91 0 chr13 94588227 94588370 -25156528 + MIR SINE MIR 24 179 -83 21 71 0 0 chr13 94589055 94589097 -25155801 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr13 94589807 94589829 -25155069 + AT_rich Low_complexity Low_complexity 1 22 0 519 60 0 0 chr13 94589980 94590047 -25154851 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr13 94590644 94590667 -25154231 + AT_rich Low_complexity Low_complexity 1 23 0 37 23 0 0 chr13 94592084 94592128 -25152770 + AT_rich Low_complexity Low_complexity 1 44 0 279 322 112 39 chr13 94592731 94592936 -25151962 - MIR SINE MIR -38 224 5 1052 250 83 37 chr13 94592939 94593143 -25151755 + MER58B DNA MER1_type 1 227 -2193 2192 113 3 0 chr13 94593143 94593444 -25151454 - AluSx SINE Alu -10 302 1 1052 250 83 37 chr13 94593444 94593563 -25151335 + MER58B DNA MER1_type 227 339 -2 878 182 7 0 chr13 94594059 94594207 -25150691 - MER69A DNA AcHobo -11 166 18 29 28 0 0 chr13 94594417 94594453 -25150445 + AT_rich Low_complexity Low_complexity 1 36 0 2366 87 0 3 chr13 94597416 94597725 -25147173 - AluY SINE Alu -3 308 1 3824 139 3 0 chr13 94597973 94598564 -25146334 + L1PA14 LINE L1 5564 6156 -5 5546 85 22 1 chr13 94598581 94599357 -25145541 + L1PA8 LINE L1 5370 6161 -11 296 311 113 0 chr13 94599509 94599660 -25145238 + L2 LINE L2 1983 2150 -1164 2384 99 0 3 chr13 94599668 94599982 -25144916 - AluSq SINE Alu 0 313 1 2711 171 148 5 chr13 94600068 94600705 -25144193 - Tigger7 DNA MER2_type -5 2482 4 297 51 0 0 chr13 94600707 94600746 -25144152 + (TG)n Simple_repeat Simple_repeat 1 39 0 27 0 0 0 chr13 94601540 94601567 -25143331 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr13 94601638 94601675 -25143223 + AT_rich Low_complexity Low_complexity 1 37 0 408 261 75 43 chr13 94602162 94602323 -25142575 - MLT1I LTR MaLR 0 409 244 26 0 0 0 chr13 94602541 94602567 -25142331 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 94602638 94602673 -25142225 + AT_rich Low_complexity Low_complexity 1 35 0 404 172 51 153 chr13 94602787 94602944 -25141954 - MLT1I LTR MaLR -255 154 14 714 55 0 0 chr13 94603274 94603365 -25141533 + (TTCTG)n Simple_repeat Simple_repeat 2 92 0 1169 305 124 19 chr13 94604181 94604771 -25140127 + MLT2F LTR ERVL 5 656 -7 235 217 11 22 chr13 94605682 94605774 -25139124 + (CATATA)n Simple_repeat Simple_repeat 3 93 0 37 62 0 0 chr13 94606084 94606149 -25138749 + AT_rich Low_complexity Low_complexity 1 65 0 232 241 19 0 chr13 94607461 94607515 -25137383 + MLT1L LTR MaLR 120 174 -441 254 237 44 53 chr13 94607676 94607790 -25137108 - L2 LINE L2 -106 3207 3095 * 2570 319 98 27 chr13 94607775 94609200 -25135698 - L2 LINE L2 -338 2976 1451 233 340 100 0 chr13 94609316 94609416 -25135482 - L2 LINE L2 0 3272 3163 262 280 100 0 chr13 94609885 94609985 -25134913 - L2 LINE L2 -2 3311 3202 21 57 0 0 chr13 94610564 94610599 -25134299 + AT_rich Low_complexity Low_complexity 1 35 0 1994 171 0 0 chr13 94611759 94612068 -25132830 - AluSx SINE Alu -3 309 1 269 122 54 0 chr13 94612112 94612186 -25132712 + (TA)n Simple_repeat Simple_repeat 2 79 0 302 242 33 44 chr13 94612186 94612277 -25132621 - L1MC4 LINE L1 -1339 6703 6614 467 98 43 0 chr13 94612285 94612377 -25132521 + (TA)n Simple_repeat Simple_repeat 1 96 0 313 206 0 29 chr13 94612604 94612672 -25132226 - MSTA LTR MaLR -42 386 321 431 189 31 0 chr13 94612672 94612799 -25132099 + (TA)n Simple_repeat Simple_repeat 1 131 0 189 0 0 0 chr13 94612799 94612820 -25132078 + (TG)n Simple_repeat Simple_repeat 2 22 0 285 29 0 0 chr13 94612820 94612854 -25132044 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2112 161 30 11 chr13 94612874 94613247 -25131651 + MSTA LTR MaLR 7 386 -42 21147 141 19 8 chr13 94613592 94616907 -25127991 + L1M1 LINE L1 12 3364 -4201 1445 136 5 9 chr13 94667105 94667318 -25077580 + AluSg/x SINE Alu 75 286 -26 183 100 0 0 chr13 94667322 94667352 -25077546 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 24 32 0 0 chr13 94668059 94668090 -25076808 + AT_rich Low_complexity Low_complexity 1 31 0 732 137 82 0 chr13 94668250 94668396 -25076502 + L1MA8 LINE L1 6131 6288 -3 2225 103 0 3 chr13 94669645 94669935 -25074963 + AluSg SINE Alu 1 289 -21 804 301 101 18 chr13 94670320 94670706 -25074192 - L2 LINE L2 -7 3306 2889 1266 325 53 59 chr13 94670870 94671749 -25073149 - L2 LINE L2 -411 2903 2030 1514 185 20 36 chr13 94671749 94672051 -25072847 + AluJo SINE Alu 1 297 -15 327 49 0 0 chr13 94672679 94672720 -25072178 + (CA)n Simple_repeat Simple_repeat 1 41 0 1085 223 9 5 chr13 94673128 94673348 -25071550 + MER58A DNA MER1_type 2 222 -2 1192 190 61 78 chr13 94674345 94674756 -25070142 + LTR37A LTR ERV1 19 422 -4 2429 75 0 3 chr13 94674770 94675076 -25069822 - AluY SINE Alu -6 305 1 272 189 38 0 chr13 94676161 94676214 -25068684 + MER50 LTR ERV1 1 55 -679 * 435 202 176 0 chr13 94676212 94676331 -25068567 + MER58A DNA MER1_type 28 167 0 1694 154 0 86 chr13 94677590 94677914 -25066984 - AluJb SINE Alu -16 296 1 23 0 0 0 chr13 94678026 94678049 -25066849 + AT_rich Low_complexity Low_complexity 1 23 0 4135 88 0 5 chr13 94678236 94678812 -25066086 + L1PA14 LINE L1 5584 6156 -5 21 0 0 0 chr13 94678873 94678894 -25066004 + AT_rich Low_complexity Low_complexity 1 21 0 200 405 0 0 chr13 94681620 94681699 -25063199 + L2 LINE L2 3108 3186 -86 872 217 10 56 chr13 94681703 94681853 -25063045 + MER5A DNA MER1_type 1 141 -48 7070 52 11 1 chr13 94681853 94683208 -25061690 + L1PA5 LINE L1 4790 6153 -1 872 217 10 56 chr13 94683208 94683255 -25061643 + MER5A DNA MER1_type 141 189 0 236 305 12 12 chr13 94683677 94683759 -25061139 + L2 LINE L2 3232 3313 0 2167 121 3 3 chr13 94684073 94684378 -25060520 + AluSc SINE Alu 3 307 -2 768 296 117 53 chr13 94685219 94685990 -25058908 + L2 LINE L2 2186 3001 -271 1000 286 78 39 chr13 94686016 94686558 -25058340 + MLT1G1 LTR MaLR 3 569 -21 259 363 0 0 chr13 94686660 94686740 -25058158 + L2 LINE L2 3134 3213 -59 225 0 0 0 chr13 94687069 94687094 -25057804 + (A)n Simple_repeat Simple_repeat 1 25 0 1984 191 21 41 chr13 94689992 94690475 -25054423 + MER31A LTR ERV1 11 483 -2 528 126 0 0 chr13 94690585 94690672 -25054226 + (TCCCC)n Simple_repeat Simple_repeat 4 90 0 213 222 19 0 chr13 94690672 94690726 -25054172 + CT-rich Low_complexity Low_complexity 2 56 0 964 273 50 45 chr13 94690733 94691114 -25053784 + MLT1E LTR MaLR 206 588 -5 798 249 29 5 chr13 94691870 94692079 -25052819 + MER58C DNA MER1_type 1 214 -1 1351 175 37 84 chr13 94692080 94692485 -25052413 + LTR37A LTR ERV1 40 425 -1 1674 156 55 30 chr13 94692605 94692971 -25051927 - THE1C LTR MaLR 0 375 1 3320 30 2 0 chr13 94693377 94693775 -25051123 - L1PA4 LINE L1 -2 6153 5755 23 0 0 0 chr13 94695040 94695063 -25049835 + AT_rich Low_complexity Low_complexity 1 23 0 271 197 0 70 chr13 94696499 94696570 -25048328 + MIR SINE MIR 109 174 -88 218 357 29 41 chr13 94697136 94697317 -25047581 + MIR3 SINE MIR 9 189 -67 335 305 66 61 chr13 94698263 94698460 -25046438 - MIR SINE MIR -8 254 57 21 36 0 0 chr13 94698658 94698686 -25046212 + AT_rich Low_complexity Low_complexity 1 28 0 468 0 0 0 chr13 94700093 94700145 -25044753 + (A)n Simple_repeat Simple_repeat 1 52 0 225 242 0 48 chr13 94700366 94700428 -25044470 - MER101 LTR ERV1 -43 431 373 1129 204 23 50 chr13 94700506 94700805 -25044093 - MER101B LTR ERV1 -271 299 9 461 277 106 32 chr13 94700822 94701005 -25043893 - LTR49-int LTR ERV1 -1026 7094 6897 1713 107 38 49 chr13 94701005 94701268 -25043630 + AluSx SINE Alu 1 260 -52 1058 84 17 17 chr13 94701281 94701459 -25043439 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 291 221 0 32 chr13 94701648 94701743 -25043155 - LTR49-int LTR ERV1 -3138 1798 1707 467 200 27 9 chr13 94701852 94701962 -25042936 - LTR49-int LTR ERV1 -2872 3459 3348 428 160 27 0 chr13 94702013 94702088 -25042810 - LTR49-int LTR ERV1 -2991 3340 3264 988 181 50 65 chr13 94702140 94702622 -25042276 - LTR49-int LTR ERV1 -2966 2980 1260 2939 96 54 0 chr13 94702629 94703077 -25041821 + L1PA14 LINE L1 5679 6150 -11 285 296 24 24 chr13 94703191 94703316 -25041582 - MIR SINE MIR 0 262 138 320 331 31 25 chr13 94703504 94703667 -25041231 - MER34C LTR ERV1 -177 408 245 1584 234 93 63 chr13 94703671 94704439 -25040459 - LTR49-int LTR ERV1 -3688 3422 742 1465 181 25 14 chr13 94704491 94704773 -25040125 - LTR49-int LTR ERV1 -4675 1656 1372 326 208 10 30 chr13 94704902 94705003 -25039895 - LTR49-int LTR ERV1 -4949 1382 1284 280 290 0 0 chr13 94705007 94705069 -25039829 - tRNA-Glu-GAG tRNA tRNA -3 72 11 2154 106 7 0 chr13 94705077 94705369 -25039529 - AluY SINE Alu -17 294 1 1462 217 24 10 chr13 94705435 94705466 -25039432 - LTR49-int LTR ERV1 -5488 843 814 369 0 0 0 chr13 94705466 94705507 -25039391 + (CA)n Simple_repeat Simple_repeat 2 42 0 1462 217 24 10 chr13 94705507 94705765 -25039133 - LTR49-int LTR ERV1 -5517 814 550 978 167 4 32 chr13 94705790 94706043 -25038855 - LTR49-int LTR ERV1 -4617 1329 1070 1854 153 10 7 chr13 94706043 94706338 -25038560 + AluSx SINE Alu 1 296 -16 978 167 4 32 chr13 94706338 94706366 -25038532 - LTR49-int LTR ERV1 -4876 1070 154 485 262 16 0 chr13 94706464 94706590 -25038308 - LTR49 LTR ERV1 0 595 468 2157 117 0 0 chr13 94706911 94707230 -25037668 - AluSx SINE Alu 0 319 1 1363 176 49 72 chr13 94707944 94708250 -25036648 + AluJo SINE Alu 1 299 -13 910 187 82 16 chr13 94708520 94708702 -25036196 - MER101B LTR ERV1 -342 228 35 336 265 108 30 chr13 94708797 94708963 -25035935 + L1M4 LINE L1 2883 3061 -3085 477 258 75 56 chr13 94709063 94709276 -25035622 - MER21B LTR ERV1 -129 734 518 643 112 0 10 chr13 94709285 94709383 -25035515 + MER4A LTR ERV1 1 97 -567 * 1514 139 170 92 chr13 94709380 94709700 -25035198 + MER4A LTR ERV1 257 609 -55 3501 127 78 21 chr13 94709700 94710281 -25034617 + LTR18B LTR ERVL 1 614 0 1514 139 170 92 chr13 94710281 94710319 -25034579 + MER4A LTR ERV1 609 643 -21 300 248 115 76 chr13 94710354 94710508 -25034390 - MER21B LTR ERV1 -428 435 276 1554 203 27 97 chr13 94710508 94711212 -25033686 - LTR9 LTR ERV1 0 612 1 663 230 65 42 chr13 94711216 94711433 -25033465 - MER21B LTR ERV1 -597 266 45 410 309 123 66 chr13 94711681 94712014 -25032884 - LTR33 LTR ERVL -169 352 1 304 285 85 48 chr13 94712014 94712284 -25032614 - L1P LINE L1 -2197 3949 3670 28 48 0 0 chr13 94712661 94712703 -25032195 + AT_rich Low_complexity Low_complexity 1 42 0 2316 148 3 6 chr13 94715095 94715460 -25029438 + THE1B LTR MaLR 1 364 0 1738 230 63 71 chr13 94715508 94716016 -25028882 - MLT1F1 LTR MaLR 0 567 64 785 258 113 27 chr13 94716104 94716325 -25028573 + MLT1E LTR MaLR 1 240 -353 872 210 195 0 chr13 94716356 94716561 -25028337 + MLT1E LTR MaLR 349 593 0 242 219 31 62 chr13 94716619 94716683 -25028215 + MIR SINE MIR 89 150 -58 2651 91 6 0 chr13 94717115 94717468 -25027430 - THE1A LTR MaLR 0 355 1 474 33 0 0 chr13 94717596 94717656 -25027242 + (TG)n Simple_repeat Simple_repeat 1 60 0 479 312 65 19 chr13 94717714 94717929 -25026969 + MLT1H LTR MaLR 39 263 -286 251 286 84 59 chr13 94718064 94718183 -25026715 + MLT1H LTR MaLR 428 549 0 1042 238 4 4 chr13 94718528 94718780 -25026118 - L1MDa LINE L1 -3680 2860 2609 622 217 200 0 chr13 94718890 94719065 -25025833 - MER2 DNA MER2_type -135 210 1 699 183 32 19 chr13 94719066 94719272 -25025626 - L1MDa LINE L1 -3924 2616 2407 533 241 121 0 chr13 94719273 94719389 -25025509 + MLT1E LTR MaLR 355 484 -109 301 250 0 0 chr13 94719427 94719499 -25025399 - L1MC/D LINE L1 -1986 5822 5751 457 316 36 28 chr13 94721109 94721359 -25023539 + MIR SINE MIR 11 262 0 26 64 0 0 chr13 94722773 94722820 -25022078 + AT_rich Low_complexity Low_complexity 1 47 0 225 0 0 0 chr13 94723377 94723402 -25021496 + (TTG)n Simple_repeat Simple_repeat 3 27 0 245 338 125 24 chr13 94723572 94723948 -25020950 + L2 LINE L2 2393 2806 -508 2400 85 3 0 chr13 94723952 94724259 -25020639 + AluY SINE Alu 1 308 -3 1089 204 9 14 chr13 94724376 94724596 -25020302 - MER20 DNA MER1_type 0 219 1 324 83 0 0 chr13 94724666 94724714 -25020184 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 330 71 59 chr13 94724717 94724956 -25019942 - MLT1J LTR MaLR -95 416 175 198 0 0 0 chr13 94725160 94725182 -25019716 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 196 253 96 36 chr13 94726066 94726149 -25018749 + L2 LINE L2 3180 3267 -5 271 315 134 8 chr13 94726327 94726454 -25018444 - MIR SINE MIR -71 191 49 182 264 38 0 chr13 94728580 94728633 -25016265 + MIR SINE MIR 86 140 -122 1145 207 135 12 chr13 94728714 94729085 -25015813 - MER110 LTR ERV1 -24 467 5 432 309 72 70 chr13 94730170 94730601 -25014297 + L1ME4a LINE L1 5637 6068 -53 291 221 145 28 chr13 94731277 94731422 -25013476 + LTR33 LTR ERVL 326 487 -34 1302 60 0 0 chr13 94731422 94731589 -25013309 + L1MA2 LINE L1 6138 6304 0 27 0 0 0 chr13 94731589 94731616 -25013282 + AT_rich Low_complexity Low_complexity 1 27 0 498 268 88 86 chr13 94731864 94732271 -25012627 + LTR16C LTR ERVL 84 491 0 258 300 49 32 chr13 94732824 94732949 -25011949 - MIR3 SINE MIR -50 158 23 669 262 75 19 chr13 94734306 94734520 -25010378 + MIR SINE MIR 27 252 -10 218 222 0 22 chr13 94734538 94734583 -25010315 + L2 LINE L2 3226 3269 -3 1634 88 0 0 chr13 94734901 94735105 -25009793 + AluSc SINE Alu 4 207 -102 2533 54 0 0 chr13 94735105 94735402 -25009496 + AluY SINE Alu 1 297 -14 814 92 0 0 chr13 94735404 94735513 -25009385 + AluSg/x SINE Alu 192 300 -9 398 268 10 0 chr13 94736770 94736891 -25008007 + MER20B DNA MER1_type 87 212 -7 2506 71 0 0 chr13 94737034 94737342 -25007556 - AluSq SINE Alu -5 308 1 1475 221 97 6 chr13 94737367 94737777 -25007121 - L1ME1 LINE L1 -8 6158 5718 222 348 93 8 chr13 94737955 94738073 -25006825 + L2 LINE L2 3141 3268 -4 363 89 0 0 chr13 94738233 94738289 -25006609 + (CA)n Simple_repeat Simple_repeat 2 57 0 199 250 0 78 chr13 94738849 94738913 -25005985 - MIR3 SINE MIR -39 169 111 247 333 0 62 chr13 94738920 94739016 -25005882 + MIR SINE MIR 34 123 -85 201 286 16 63 chr13 94739189 94739252 -25005646 + MIR SINE MIR 30 89 -119 236 341 41 15 chr13 94739345 94739476 -25005422 - MIR SINE MIR -65 143 20 421 243 76 0 chr13 94739839 94739983 -25004915 - Charlie2 DNA MER1_type -541 2321 2167 303 188 30 40 chr13 94740013 94740114 -25004784 + Charlie2 DNA MER1_type 2222 2321 -541 3440 238 142 35 chr13 94740171 94740489 -25004409 - Charlie2a DNA MER1_type -767 2095 1812 2412 206 38 29 chr13 94740489 94740534 -25004364 + MER68 LTR ERV1 1 44 -518 2193 104 24 0 chr13 94740534 94740832 -25004066 + AluSx SINE Alu 1 305 -7 2412 206 38 29 chr13 94740832 94741343 -25003555 + MER68 LTR ERV1 44 562 0 3440 238 142 35 chr13 94741343 94742880 -25002018 - Charlie2a DNA MER1_type -1050 1812 2 27 0 0 0 chr13 94743552 94743579 -25001319 + AT_rich Low_complexity Low_complexity 1 27 0 274 71 0 54 chr13 94743901 94743957 -25000941 + (GAAAA)n Simple_repeat Simple_repeat 1 53 0 2403 94 3 0 chr13 94744087 94744394 -25000504 - AluSp SINE Alu -5 308 1 244 238 0 16 chr13 94745563 94745626 -24999272 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 4948 139 28 65 chr13 94747050 94747126 -24997772 + L1MC1 LINE L1 5327 5404 -929 2378 79 0 13 chr13 94747126 94747441 -24997457 + AluY SINE Alu 1 311 0 4948 139 28 65 chr13 94747441 94748405 -24996493 + L1MC1 LINE L1 5404 6328 -5 826 330 28 25 chr13 94749000 94749713 -24995185 + L1MEc LINE L1 1028 1742 -4654 1137 166 26 34 chr13 94749838 94750103 -24994795 + L1MC3 LINE L1 7516 7778 -7 407 179 168 0 chr13 94750321 94750416 -24994482 + MER3 DNA MER1_type 83 193 -16 332 289 38 34 chr13 94750430 94750665 -24994233 + L1MEc LINE L1 2055 2290 -4106 23 33 0 0 chr13 94750687 94750717 -24994181 + AT_rich Low_complexity Low_complexity 1 30 0 362 248 139 61 chr13 94751262 94751556 -24993342 - MLT1I LTR MaLR -8 401 85 316 327 9 0 chr13 94751788 94751901 -24992997 + MER117 DNA MER1_type 53 166 -31 410 300 132 57 chr13 94751982 94752405 -24992493 + MLT1H LTR MaLR 95 549 0 23 78 0 0 chr13 94752662 94752713 -24992185 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr13 94752749 94752782 -24992116 + AT_rich Low_complexity Low_complexity 1 33 0 1853 172 0 0 chr13 94752802 94753128 -24991770 - AluJo SINE Alu 0 326 1 1944 167 26 35 chr13 94753261 94753416 -24991482 + MER7A DNA MER2_type 4 159 -2879 1403 102 40 35 chr13 94753416 94753642 -24991256 + MER30 DNA MER1_type 2 228 -2 1944 167 26 35 chr13 94753642 94753833 -24991065 + MER7A DNA MER2_type 159 345 -1 461 362 18 6 chr13 94754022 94754185 -24990713 - MER5B DNA MER1_type -10 168 4 225 224 0 0 chr13 94754820 94754878 -24990020 + A-rich Low_complexity Low_complexity 1 58 0 1992 132 14 0 chr13 94756984 94757101 -24987797 + AluSq SINE Alu 3 117 -196 270 0 0 0 chr13 94757101 94757131 -24987767 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1992 132 14 0 chr13 94757131 94757301 -24987597 + AluSq SINE Alu 117 294 -19 1130 300 87 67 chr13 94759167 94760020 -24984878 - L2 LINE L2 -292 2980 2108 279 0 0 0 chr13 94760734 94760765 -24984133 + (CA)n Simple_repeat Simple_repeat 2 32 0 287 163 43 11 chr13 94761529 94761621 -24983277 + (TA)n Simple_repeat Simple_repeat 2 96 0 25 31 0 0 chr13 94763234 94763266 -24981632 + AT_rich Low_complexity Low_complexity 1 32 0 383 123 0 27 chr13 94763759 94763832 -24981066 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 1319 244 71 6 chr13 94763905 94764269 -24980629 - MER63 DNA MER1_type -1 1061 674 1236 270 70 32 chr13 94765131 94765842 -24979056 - HsTC2a DNA MER2_type -2 742 5 593 286 41 15 chr13 94766186 94766382 -24978516 - MER46C DNA MER2_type -1 337 137 833 318 43 6 chr13 94766390 94766717 -24978181 - MER93a LTR ERV1 -3 399 61 671 323 116 46 chr13 94767141 94768006 -24976892 + L2 LINE L2 2353 3296 -17 243 0 0 0 chr13 94768287 94768314 -24976584 + (TG)n Simple_repeat Simple_repeat 2 28 0 387 0 0 0 chr13 94768322 94768365 -24976533 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1544 158 60 3 chr13 94769417 94769733 -24975165 - L1MA8 LINE L1 -3 6288 5955 201 290 221 41 chr13 94770466 94770611 -24974287 - MIR SINE MIR -72 190 20 1615 151 15 15 chr13 94770634 94770939 -24973959 + AluJb SINE Alu 11 315 0 202 285 35 27 chr13 94771416 94771566 -24973332 + MIR3 SINE MIR 13 236 -26 2273 102 0 13 chr13 94772997 94773310 -24971588 - AluSq SINE Alu 0 313 5 299 244 198 0 chr13 94773362 94773448 -24971450 - MER5A DNA MER1_type -83 106 4 2171 98 75 23 chr13 94773974 94774320 -24970578 - THE1B LTR MaLR 0 364 1 760 195 0 82 chr13 94774728 94774923 -24969975 + MLT1D LTR MaLR 1 179 -447 503 181 0 0 chr13 94774931 94775014 -24969884 - AluJ/FLAM SINE Alu -227 85 3 1296 180 92 33 chr13 94775632 94775772 -24969126 + MLT1D LTR MaLR 181 311 -194 3085 113 81 14 chr13 94775772 94776266 -24968632 - MER1A DNA MER1_type 0 527 1 1296 180 92 33 chr13 94776266 94776430 -24968468 + MLT1D LTR MaLR 311 503 -2 694 277 56 43 chr13 94777148 94777379 -24967519 - MIR SINE MIR -5 257 24 191 354 94 0 chr13 94777494 94777621 -24967277 + L3 LINE CR1 1426 1564 -13 228 185 19 0 chr13 94777877 94777931 -24966967 + T-rich Low_complexity Low_complexity 2 56 0 22 35 0 0 chr13 94778142 94778171 -24966727 + AT_rich Low_complexity Low_complexity 1 29 0 186 103 0 0 chr13 94778657 94778686 -24966212 + (T)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr13 94782615 94782636 -24962262 + AT_rich Low_complexity Low_complexity 1 21 0 584 247 56 45 chr13 94782888 94783066 -24961832 - MER20 DNA MER1_type -39 180 1 810 189 17 46 chr13 94783121 94783296 -24961602 - MLT2D LTR ERVL 0 414 245 365 317 161 55 chr13 94783301 94783698 -24961200 + L2 LINE L2 2834 3272 0 681 101 0 10 chr13 94784037 94784136 -24960762 + MER4A LTR ERV1 1 98 -566 1589 123 180 79 chr13 94784136 94784503 -24960395 + MER4A LTR ERV1 261 664 0 644 243 10 53 chr13 94784508 94784714 -24960184 + LTR41 LTR ERVL 1 197 -576 310 244 78 60 chr13 94784882 94785146 -24959752 + LTR41 LTR ERVL 510 795 0 213 229 0 0 chr13 94786454 94786502 -24958396 + L2 LINE L2 3262 3309 -4 21 0 0 0 chr13 94788735 94788756 -24956142 + AT_rich Low_complexity Low_complexity 1 21 0 1456 163 62 31 chr13 94789856 94790144 -24954754 + AluJb SINE Alu 6 302 -10 451 324 79 19 chr13 94790531 94791277 -24953621 + L1ME2 LINE L1 1027 1817 -4579 332 255 81 67 chr13 94791516 94791665 -24953233 + L1ME2 LINE L1 2111 2261 -4135 1226 260 122 19 chr13 94791666 94792240 -24952658 + L1ME2 LINE L1 5601 6233 0 360 246 60 26 chr13 94792274 94792506 -24952392 + L1MEc LINE L1 2217 2456 -3759 2005 129 34 7 chr13 94792548 94792842 -24952056 + AluSx SINE Alu 1 302 -10 309 51 0 0 chr13 94792928 94792944 -24951954 + (CA)n Simple_repeat Simple_repeat 1 55 0 309 51 0 0 chr13 94792944 94792983 -24951915 + (CA)n Simple_repeat Simple_repeat 2 40 0 2101 100 0 0 chr13 94793007 94793277 -24951621 - AluSg SINE Alu -1 309 40 447 305 29 32 chr13 94793321 94793485 -24951413 + L1MEc LINE L1 2602 2765 -3450 1747 131 100 29 chr13 94793485 94793666 -24951232 + THE1C LTR MaLR 1 168 -207 381 22 0 0 chr13 94793666 94793712 -24951186 + (TC)n Simple_repeat Simple_repeat 1 46 0 1747 131 100 29 chr13 94793712 94793880 -24951018 + THE1C LTR MaLR 168 375 0 447 305 29 32 chr13 94793880 94794056 -24950842 + L1MEc LINE L1 2765 2941 -3274 1020 260 93 49 chr13 94794070 94794675 -24950223 + L1ME3A LINE L1 5515 6146 -24 516 225 0 16 chr13 94796464 94796593 -24948305 + L1MC/D LINE L1 5592 5718 -641 23 33 0 0 chr13 94796866 94796896 -24948002 + AT_rich Low_complexity Low_complexity 1 30 0 214 315 9 65 chr13 94796901 94797009 -24947889 - L2 LINE L2 -46 3226 3125 198 259 35 0 chr13 94799450 94799508 -24945390 + MIR SINE MIR 196 255 -7 21 0 0 0 chr13 94799629 94799650 -24945248 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 94802045 94802073 -24942825 + AT_rich Low_complexity Low_complexity 1 28 0 203 156 0 0 chr13 94802337 94802369 -24942529 + (CA)n Simple_repeat Simple_repeat 1 32 0 3247 186 83 40 chr13 94803359 94804356 -24940542 + L1MB5 LINE L1 4958 6018 -156 2861 122 17 0 chr13 94804356 94804775 -24940123 + MSTB LTR MaLR 1 426 0 3247 186 83 40 chr13 94804775 94804940 -24939958 + L1MB5 LINE L1 6018 6174 0 273 213 29 96 chr13 94809235 94809371 -24935527 - LTR67 LTR ERVL -3 554 428 382 368 78 9 chr13 94809887 94810118 -24934780 + MIR SINE MIR 16 262 0 448 274 8 8 chr13 94810515 94810632 -24934266 + MIR SINE MIR 31 147 -115 267 282 13 26 chr13 94811022 94811100 -24933798 + MER5B DNA MER1_type 4 80 -98 35 0 0 0 chr13 94811128 94811163 -24933735 + AT_rich Low_complexity Low_complexity 1 35 0 198 345 0 12 chr13 94811312 94811396 -24933502 - L3b LINE CR1 -172 1411 1329 191 293 85 0 chr13 94811867 94811949 -24932949 + MIR SINE MIR 173 261 -1 526 267 37 0 chr13 94811961 94812096 -24932802 - MIR SINE MIR -76 186 47 532 146 173 0 chr13 94814076 94814186 -24930712 + FLAM_C SINE Alu 2 130 -3 277 225 20 126 chr13 94814823 94814974 -24929924 + MLT1J2 LTR MaLR 87 221 -229 1677 129 120 23 chr13 94815024 94815366 -24929532 - THE1C LTR MaLR 0 375 1 633 240 0 0 chr13 94815975 94816150 -24928748 + (CA)n Simple_repeat Simple_repeat 2 176 0 230 184 0 0 chr13 94816155 94816193 -24928705 + (TA)n Simple_repeat Simple_repeat 1 38 0 231 261 20 161 chr13 94817317 94817371 -24927527 + MER5B DNA MER1_type 5 65 -113 2595 37 0 43 chr13 94817371 94817696 -24927202 - AluY SINE Alu 0 311 1 231 261 20 161 chr13 94817696 94817840 -24927058 + MER5B DNA MER1_type 65 175 -3 1024 167 27 11 chr13 94817850 94818036 -24926862 + MER5A DNA MER1_type 1 189 0 237 292 14 0 chr13 94819122 94819194 -24925704 + CT-rich Low_complexity Low_complexity 1 73 0 372 103 0 0 chr13 94819565 94819623 -24925275 + (TA)n Simple_repeat Simple_repeat 2 59 0 1168 15 0 0 chr13 94819623 94819756 -24925142 - L1PA5 LINE L1 -15 6139 6007 240 35 0 0 chr13 94820364 94820393 -24924505 + (TG)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 94820445 94820475 -24924423 + AT_rich Low_complexity Low_complexity 1 30 0 1112 180 0 0 chr13 94820595 94820778 -24924120 + MER5A DNA MER1_type 7 189 0 306 87 0 0 chr13 94820877 94820923 -24923975 + MER58 DNA MER1_type 2360 2405 -15 208 436 74 0 chr13 94821300 94821449 -24923449 + L2 LINE L2 3089 3248 -24 1303 220 18 49 chr13 94822345 94822557 -24922341 - MLT1A2 LTR MaLR 0 374 178 2193 119 0 3 chr13 94822557 94822852 -24922046 - AluSq SINE Alu -19 294 1 1303 220 18 49 chr13 94822852 94823025 -24921873 - MLT1A2 LTR MaLR -196 178 1 2132 123 7 0 chr13 94823420 94823712 -24921186 - AluSx SINE Alu -18 294 1 751 310 86 33 chr13 94824577 94824996 -24919902 - LTR33A LTR ERVL -80 443 3 1537 224 53 106 chr13 94825473 94826021 -24918877 + LTR40a LTR ERVL 1 519 0 346 258 170 13 chr13 94827564 94827723 -24917175 + MIR SINE MIR 79 262 0 748 232 12 6 chr13 94828534 94828698 -24916200 - MIR SINE MIR -34 228 64 920 205 0 6 chr13 94829631 94829797 -24915101 + FRAM SINE Alu 1 165 -1 29 70 0 0 chr13 94830049 94830106 -24914792 + AT_rich Low_complexity Low_complexity 1 57 0 2261 119 0 0 chr13 94830160 94830470 -24914428 + AluSx SINE Alu 1 310 -2 253 280 229 25 chr13 94832504 94832661 -24912237 + MIR SINE MIR 52 240 -22 248 341 11 66 chr13 94832770 94832952 -24911946 + L2 LINE L2 2918 3089 -183 263 290 0 0 chr13 94833104 94833166 -24911732 + GA-rich Low_complexity Low_complexity 1 62 0 2029 148 7 0 chr13 94833394 94833685 -24911213 - AluSx SINE Alu -19 293 1 834 271 22 19 chr13 94834208 94834477 -24910421 - LTR40a LTR ERVL 0 519 250 1007 125 27 0 chr13 94834512 94834696 -24910202 - L1MA4A LINE L1 -11 6292 6104 2247 103 30 0 chr13 94834723 94835024 -24909874 - AluSg SINE Alu 0 310 1 771 145 0 0 chr13 94835024 94835148 -24909750 - L1MA4A LINE L1 -566 5737 5614 1768 167 31 14 chr13 94835166 94835460 -24909438 - AluJb SINE Alu -13 299 1 323 309 32 4 chr13 94836309 94836419 -24908479 + MIR SINE MIR 40 149 -70 1002 213 31 108 chr13 94836490 94836695 -24908203 + MLT1H LTR MaLR 73 245 -304 722 246 103 5 chr13 94836695 94836898 -24908000 - MER58A DNA MER1_type 0 224 2 1002 213 31 108 chr13 94836898 94837016 -24907882 + MLT1H LTR MaLR 245 371 -178 648 268 173 54 chr13 94837150 94837519 -24907379 + LTR16A1 LTR ERVL 32 444 -13 1981 190 80 0 chr13 94837864 94838264 -24906634 + MSTB1 LTR MaLR 1 432 0 34 79 0 0 chr13 94840454 94840530 -24904368 + AT_rich Low_complexity Low_complexity 1 76 0 2414 177 20 55 chr13 94840599 94840996 -24903902 - L1MB3 LINE L1 -4 6179 5805 483 18 0 0 chr13 94840996 94841052 -24903846 + (TG)n Simple_repeat Simple_repeat 1 56 0 2414 177 20 55 chr13 94841052 94841196 -24903702 - L1MB3 LINE L1 -378 5805 5657 503 260 18 57 chr13 94841219 94841446 -24903452 - L1MA9 LINE L1 -38 6274 6057 3400 189 41 15 chr13 94841449 94842181 -24902717 + L1MA9 LINE L1 5280 6030 -282 1997 133 3 7 chr13 94842917 94843218 -24901680 - AluSx SINE Alu -12 300 1 350 313 32 83 chr13 94843653 94843870 -24901028 + MIR SINE MIR 26 231 -31 1523 243 61 42 chr13 94843937 94844431 -24900467 - MLT1D LTR MaLR 0 505 3 289 291 45 36 chr13 94845507 94845614 -24899284 + MIR SINE MIR 38 145 -117 408 278 100 66 chr13 94845614 94845855 -24899043 + MIR SINE MIR 1 249 -13 636 149 9 9 chr13 94845938 94846045 -24898853 + MLT1A1 LTR MaLR 1 107 -258 270 294 185 0 chr13 94847117 94847209 -24897689 - L2 LINE L2 -25 3247 3139 191 317 54 38 chr13 94847448 94847634 -24897264 + L2 LINE L2 2250 2438 -876 2076 136 37 11 chr13 94848157 94848509 -24896389 + MER46B DNA MER2_type 1 236 0 471 252 52 15 chr13 94848556 94848691 -24896207 + MIR SINE MIR 58 197 -65 1558 304 65 45 chr13 94848852 94850026 -24894872 + L1MEd LINE L1 12 1208 -4911 597 125 25 0 chr13 94850079 94850199 -24894699 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 256 284 11 0 chr13 94850226 94850314 -24894584 + HAL1 LINE L1 1429 1517 -990 1181 28 49 0 chr13 94851895 94852076 -24892822 - AluY SINE Alu 0 323 136 551 259 75 47 chr13 94852316 94852528 -24892370 - MIR SINE MIR 0 262 45 297 151 0 0 chr13 94852553 94852606 -24892292 + (TG)n Simple_repeat Simple_repeat 2 54 0 790 188 41 0 chr13 94852613 94852783 -24892115 - L1MB4 LINE L1 -23 6157 5981 1039 297 76 41 chr13 94853227 94854400 -24890498 + L1M4 LINE L1 2898 4111 -2035 496 296 123 6 chr13 94854413 94854764 -24890134 + L1M4 LINE L1 4942 5333 -813 2262 144 25 30 chr13 94857238 94857669 -24887229 + L1MC1 LINE L1 5890 6318 -15 323 339 111 18 chr13 94860770 94860941 -24883957 + MIR SINE MIR 20 206 -56 248 295 38 126 chr13 94861600 94861783 -24883115 - MER5A DNA MER1_type -22 167 1 2000 149 0 7 chr13 94863855 94864157 -24880741 + AluJb SINE Alu 5 304 -8 2552 71 0 0 chr13 94864188 94864499 -24880399 + AluY SINE Alu 1 311 0 2581 152 73 2 chr13 94864500 94864940 -24879958 - MER31A LTR ERV1 -12 473 3 1394 226 55 40 chr13 94866978 94867429 -24877469 - LTR40b LTR ERVL -2 460 3 483 219 48 0 chr13 94867431 94867536 -24877362 - HERVL40 LTR ERVL 0 5530 5421 4509 269 46 19 chr13 94867981 94869275 -24875623 - HERVL40 LTR ERVL -860 4670 3342 815 261 28 43 chr13 94869329 94869582 -24875316 - HERVL40 LTR ERVL -3017 2513 2265 209 244 0 0 chr13 94869597 94869642 -24875256 + L2 LINE L2 3261 3305 -8 1014 185 97 13 chr13 94870017 94870244 -24874654 + L1MB4 LINE L1 5931 6176 -4 222 356 55 0 chr13 94871262 94871335 -24873563 + L2 LINE L2 3141 3217 -55 706 294 6 24 chr13 94872070 94872303 -24872595 - MIR SINE MIR -1 261 34 6397 44 16 0 chr13 94873937 94874882 -24870016 - L1P2 LINE L1 -598 5557 4598 4729 32 0 0 chr13 94874889 94875446 -24869452 + L1PA5 LINE L1 5594 6150 -4 198 0 0 0 chr13 94875450 94875472 -24869426 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 605 307 41 44 chr13 94875508 94875769 -24869129 + MIR SINE MIR 3 261 -1 24 0 0 0 chr13 94877381 94877405 -24867493 + AT_rich Low_complexity Low_complexity 1 24 0 422 323 76 64 chr13 94878034 94878378 -24866520 - L2 LINE L2 0 3272 2925 385 335 159 18 chr13 94878487 94878997 -24865901 - L2 LINE L2 -1653 1661 1080 482 338 147 35 chr13 94879085 94879469 -24865429 - L2 LINE L2 -61 3252 2912 2071 129 7 0 chr13 94879469 94879778 -24865120 + AluSx SINE Alu 1 311 -1 482 338 147 35 chr13 94879778 94880315 -24864583 - L2 LINE L2 -401 2912 2227 200 302 70 23 chr13 94880421 94880507 -24864391 - L2 LINE L2 -2906 408 319 1225 208 5 0 chr13 94880735 94880947 -24863951 + MER58A DNA MER1_type 6 218 -6 348 371 41 0 chr13 94881580 94881750 -24863148 - Charlie8 DNA MER1_type -2146 271 95 674 336 43 29 chr13 94882457 94882805 -24862093 - LTR16B LTR ERVL -2 462 110 271 214 8 137 chr13 94882861 94882916 -24861982 - LTR16B LTR ERVL -360 104 70 1960 147 27 27 chr13 94882916 94883291 -24861607 + THE1C LTR MaLR 1 375 0 271 214 8 137 chr13 94883291 94883352 -24861546 - LTR16B LTR ERVL -394 70 3 225 0 0 0 chr13 94884337 94884362 -24860536 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 220 315 148 27 chr13 94885487 94885636 -24859262 + MIR3 SINE MIR 7 173 -35 2260 74 11 0 chr13 94885903 94886187 -24858711 + AluY SINE Alu 6 292 -19 1344 209 65 85 chr13 94886629 94887096 -24857802 - MER66A LTR ERV1 0 478 97 1383 234 40 0 chr13 94887223 94887526 -24857372 - MLT1E2 LTR MaLR 0 626 312 1666 172 4 4 chr13 94887562 94887829 -24857069 - AluJo SINE Alu -45 267 1 412 239 161 8 chr13 94887847 94887977 -24856921 - MLT1E2 LTR MaLR -503 151 2 500 331 24 44 chr13 94888077 94888325 -24856573 + MIR SINE MIR 12 254 -8 195 362 52 26 chr13 94888347 94888463 -24856435 - MIR SINE MIR -137 125 7 584 302 87 7 chr13 94888529 94888817 -24856081 + L2 LINE L2 1407 1717 -1597 644 280 48 0 chr13 94888854 94889040 -24855858 + L2 LINE L2 2395 2589 -725 511 276 64 34 chr13 94889054 94889333 -24855565 + L2 LINE L2 2768 3049 -264 222 37 0 0 chr13 94889339 94889366 -24855532 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1596 186 0 28 chr13 94889371 94889656 -24855242 - AluJo SINE Alu -35 277 1 563 146 0 0 chr13 94889770 94889859 -24855039 - AluJ/FLAM SINE Alu -223 89 1 433 289 40 40 chr13 94889960 94890133 -24854765 + L2 LINE L2 3136 3308 -5 395 394 8 43 chr13 94890200 94890454 -24854444 - L2 LINE L2 -37 3235 2991 983 244 44 15 chr13 94892028 94892299 -24852599 - MLT1C LTR MaLR 0 467 189 641 206 18 61 chr13 94892437 94892602 -24852296 - MLT1C LTR MaLR -347 158 1 1700 161 21 14 chr13 94892607 94892893 -24852005 - AluJo SINE Alu -24 288 1 1070 187 23 23 chr13 94893009 94893223 -24851675 - MER20 DNA MER1_type 0 219 6 1652 157 76 28 chr13 94893550 94893906 -24850992 - THE1C LTR MaLR 0 375 3 1868 153 3 3 chr13 94895198 94895517 -24849381 - AluSx SINE Alu 0 324 6 284 247 27 55 chr13 94895643 94895716 -24849182 - MER91B DNA MER1_type -116 74 4 1117 227 99 104 chr13 94895750 94896164 -24848734 + MLT2B1 LTR ERVL 1 412 -2 29 60 0 0 chr13 94896556 94896606 -24848292 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr13 94896681 94896704 -24848194 + AT_rich Low_complexity Low_complexity 1 23 0 201 174 58 29 chr13 94897148 94897217 -24847681 + T-rich Low_complexity Low_complexity 2 72 0 3724 112 16 36 chr13 94897429 94898041 -24846857 + L1PB4 LINE L1 5518 6118 -38 2074 129 23 0 chr13 94898041 94898161 -24846737 + AluSx SINE Alu 4 120 -192 315 0 0 0 chr13 94898161 94898196 -24846702 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2074 129 23 0 chr13 94898196 94898377 -24846521 + AluSx SINE Alu 120 312 0 3724 112 16 36 chr13 94898377 94898406 -24846492 + L1PB4 LINE L1 6118 6146 -10 262 308 137 17 chr13 94898427 94898544 -24846354 + MIR SINE MIR 20 150 -112 1367 111 65 9 chr13 94899604 94899821 -24845077 - MER30 DNA MER1_type 0 230 2 2345 210 72 45 chr13 94900013 94900154 -24844744 - Charlie2a DNA MER1_type -10 2852 2716 2502 51 0 0 chr13 94900154 94900448 -24844450 - AluY SINE Alu -17 294 1 2345 210 72 45 chr13 94900448 94901163 -24843735 - Charlie2a DNA MER1_type -146 2716 1879 1950 104 28 17 chr13 94901163 94901451 -24843447 + AluSg SINE Alu 1 291 -19 2345 210 72 45 chr13 94901451 94901894 -24843004 - Charlie2a DNA MER1_type -983 1879 1449 552 216 159 26 chr13 94901918 94902145 -24842753 - Charlie2a DNA MER1_type -1563 1299 1043 525 251 269 3 chr13 94902389 94902712 -24842186 - Charlie2a DNA MER1_type -2302 480 72 346 257 76 21 chr13 94902865 94903009 -24841889 - Charlie8 DNA MER1_type -2224 193 42 213 211 88 0 chr13 94903231 94903288 -24841610 - L2 LINE L2 0 3272 3211 477 297 22 0 chr13 94904400 94904538 -24840360 + MIR SINE MIR 122 262 0 1009 240 92 35 chr13 94904718 94905001 -24839897 + LTR33 LTR ERVL 13 311 -210 4795 207 65 29 chr13 94905451 94907146 -24837752 - L1ME1 LINE L1 -296 5870 4109 4767 250 28 19 chr13 94907147 94909296 -24835602 - L1PA15-16 LINE L1 -2867 3336 1145 734 216 23 11 chr13 94909311 94909487 -24835411 - L1PB4 LINE L1 0 6156 5979 804 266 56 139 chr13 94909490 94910576 -24834322 - L1PA15-16 LINE L1 -5156 1048 53 365 365 127 43 chr13 94910739 94911274 -24833624 - L1M2 LINE L1 -6251 598 19 507 211 58 0 chr13 94911274 94911378 -24833520 - MLT1A1 LTR MaLR -75 290 181 3096 237 60 11 chr13 94911390 94912372 -24832526 - L1M4 LINE L1 -782 5364 4335 658 330 18 0 chr13 94912487 94912769 -24832129 - L1M4 LINE L1 -2532 3614 3328 907 171 57 11 chr13 94914486 94914662 -24830236 - MER3 DNA MER1_type -25 184 1 1536 223 93 26 chr13 94914864 94915507 -24829391 - MER69B DNA AcHobo -1 1225 512 1619 279 45 16 chr13 94916256 94916768 -24828130 - MER69B DNA AcHobo -699 527 1 1933 185 54 27 chr13 94916962 94917046 -24827852 - MER47B DNA MER2_type -1905 418 338 2298 84 3 3 chr13 94917046 94917342 -24827556 + AluSx SINE Alu 1 296 -16 1933 185 54 27 chr13 94917342 94917662 -24827236 - MER47B DNA MER2_type -1985 338 3 2253 96 0 0 chr13 94918198 94918508 -24826390 + AluSg SINE Alu 1 310 0 29 0 0 0 chr13 94919264 94919293 -24825605 + AT_rich Low_complexity Low_complexity 1 29 0 945 163 114 5 chr13 94919463 94919647 -24825251 - Tigger7 DNA MER2_type -1828 659 456 473 336 130 14 chr13 94919859 94920082 -24824816 - MIR SINE MIR -13 249 1 269 340 85 7 chr13 94920244 94920385 -24824513 - L2 LINE L2 0 3313 3162 2162 256 62 20 chr13 94920385 94920870 -24824028 + L1M4c LINE L1 1066 1594 -4790 3917 193 29 4 chr13 94920870 94921584 -24823314 - MER44D DNA MER2_type -1 604 1 2162 256 62 20 chr13 94921584 94921843 -24823055 + L1M4c LINE L1 1594 1841 -4543 2147 213 79 6 chr13 94921924 94922407 -24822491 + MER54A LTR ERVL 1 518 -383 426 169 0 0 chr13 94922452 94922517 -24822381 - MER54A LTR ERVL -35 866 802 * 2145 200 31 0 chr13 94922512 94922897 -24822001 + MER54A LTR ERVL 505 901 0 1445 244 41 33 chr13 94922920 94923284 -24821614 - MLT1A2 LTR MaLR 0 374 8 369 333 52 0 chr13 94923295 94923430 -24821468 + LTR16C LTR ERVL 350 491 0 344 246 18 44 chr13 94923441 94923555 -24821343 + L1ME3A LINE L1 5690 5800 -370 304 203 0 31 chr13 94923564 94923658 -24821240 + L1ME3A LINE L1 5874 5962 -208 214 254 14 14 chr13 94923833 94923904 -24820994 + (CATA)n Simple_repeat Simple_repeat 1 71 0 291 119 0 0 chr13 94923906 94923948 -24820950 + Alu SINE Alu 254 295 -7 54 29 0 0 chr13 94924073 94924141 -24820757 + AT_rich Low_complexity Low_complexity 1 68 0 204 298 73 32 chr13 94924606 94924730 -24820168 + MIR SINE MIR 59 187 -75 1391 175 45 45 chr13 94925378 94925670 -24819228 + AluJo SINE Alu 1 292 -20 347 288 96 40 chr13 94925866 94925991 -24818907 - L2 LINE L2 -2 3270 3139 216 391 87 34 chr13 94926246 94926568 -24818330 + L2 LINE L2 2914 3252 -20 2112 113 0 0 chr13 94927155 94927489 -24817409 + AluSx SINE Alu 1 334 0 239 312 138 7 chr13 94928373 94928511 -24816387 + MLT1J LTR MaLR 227 382 -129 1513 233 133 46 chr13 94929325 94929913 -24814985 + MLT1E2 LTR MaLR 1 626 0 2146 166 0 6 chr13 94929945 94930295 -24814603 + MER7A DNA MER2_type 1 346 0 23 0 0 0 chr13 94930810 94930833 -24814065 + AT_rich Low_complexity Low_complexity 1 23 0 1317 189 51 18 chr13 94930894 94931227 -24813671 - LTR37A LTR ERV1 -2 424 81 909 181 6 0 chr13 94931241 94931352 -24813546 + AluJb SINE Alu 11 125 -187 315 0 0 0 chr13 94931352 94931387 -24813511 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 909 181 6 0 chr13 94931387 94931441 -24813457 + AluJb SINE Alu 125 177 -135 250 214 12 71 chr13 94931557 94931641 -24813257 + LTR37A LTR ERV1 2 80 -346 1700 166 38 10 chr13 94931644 94931933 -24812965 - AluJb SINE Alu -15 297 1 1273 225 84 47 chr13 94932197 94932579 -24812319 + MSTD LTR MaLR 1 396 0 21 57 0 0 chr13 94932720 94932755 -24812143 + AT_rich Low_complexity Low_complexity 1 35 0 464 277 130 11 chr13 94934346 94934530 -24810368 - MLT1B-int LTR MaLR -839 532 327 1062 175 20 5 chr13 94934804 94935004 -24809894 - MLT1B LTR MaLR -48 342 140 1758 242 28 32 chr13 94935020 94935491 -24809407 - MLT1G LTR MaLR -121 469 1 940 206 36 31 chr13 94936328 94936551 -24808347 - MER58A DNA MER1_type 0 224 1 796 247 19 0 chr13 94936558 94936720 -24808178 + MER5A DNA MER1_type 10 174 -15 2246 122 0 6 chr13 94936981 94937293 -24807605 - AluSg SINE Alu 0 310 1 252 0 0 0 chr13 94937966 94937994 -24806904 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1930 97 15 0 chr13 94937999 94938268 -24806630 - AluSx SINE Alu -39 273 1 446 254 100 38 chr13 94938722 94938962 -24805936 - MER112 DNA MER1_type -1 255 1 3467 137 75 41 chr13 94939217 94939949 -24804949 + LTR1B LTR ERV1 1 785 0 23 54 0 0 chr13 94940323 94940360 -24804538 + AT_rich Low_complexity Low_complexity 1 37 0 2289 174 17 19 chr13 94940399 94940828 -24804070 + MSTB1 LTR MaLR 2 430 -2 30 27 0 0 chr13 94940973 94941010 -24803888 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 94941644 94941667 -24803231 + AT_rich Low_complexity Low_complexity 1 23 0 1726 274 67 78 chr13 94942053 94942322 -24802576 - L1MC4 LINE L1 -3 8039 7769 2219 122 33 28 chr13 94942322 94942684 -24802214 + THE1B LTR MaLR 1 364 0 1726 274 67 78 chr13 94942684 94943536 -24801362 - L1MC4 LINE L1 -273 7769 6930 770 163 14 21 chr13 94943536 94943675 -24801223 + MER2 DNA MER2_type 2 139 -206 2162 121 80 31 chr13 94943675 94944141 -24800757 + MER1A DNA MER1_type 1 529 0 1204 156 24 0 chr13 94944141 94944350 -24800548 + MER2 DNA MER2_type 132 345 0 743 194 42 26 chr13 94944354 94944535 -24800363 - L1MC4 LINE L1 -1085 6916 6723 1086 173 5 36 chr13 94944954 94945174 -24799724 + AluJb SINE Alu 87 299 -13 1347 168 8 16 chr13 94945339 94945583 -24799315 - AluJo SINE Alu -70 242 1 194 274 0 0 chr13 94945647 94945698 -24799200 - MIR SINE MIR -1 261 211 2065 96 17 17 chr13 94946189 94946482 -24798416 - AluSq SINE Alu 0 313 21 2655 113 36 5 chr13 94946684 94947099 -24797799 - MSTA LTR MaLR 0 428 1 1690 160 3 25 chr13 94947101 94947383 -24797515 - AluJo SINE Alu -36 276 1 378 296 108 34 chr13 94947391 94947567 -24797331 - L2 LINE L2 -20 3293 3105 1480 171 63 7 chr13 94947803 94948089 -24796809 - AluJo SINE Alu -10 302 1 2213 174 66 14 chr13 94949020 94949458 -24795440 + LOR1b LTR ERV1 1 461 0 1467 170 50 76 chr13 94949981 94950364 -24794534 + THE1C LTR MaLR 1 373 -2 207 0 0 0 chr13 94951273 94951296 -24793602 + (T)n Simple_repeat Simple_repeat 1 23 0 254 329 0 0 chr13 94951433 94951518 -24793380 - MER112 DNA MER1_type -10 250 166 435 52 21 42 chr13 94952257 94952353 -24792545 + (TA)n Simple_repeat Simple_repeat 2 95 0 207 0 0 0 chr13 94952477 94952500 -24792398 + (A)n Simple_repeat Simple_repeat 1 23 0 329 86 75 0 chr13 94952681 94952774 -24792124 + (TA)n Simple_repeat Simple_repeat 1 100 0 778 232 60 102 chr13 94953215 94953598 -24791300 + HAL1b LINE L1 213 579 -769 453 263 47 29 chr13 94953916 94954087 -24790811 - MER112 DNA MER1_type -86 174 1 426 157 50 77 chr13 94954256 94954437 -24790461 + HsTC2 DNA Tc2 1 1884 -14 520 290 108 22 chr13 94955041 94955310 -24789588 - LTR41 LTR ERVL -6 767 476 542 228 56 28 chr13 94955573 94955753 -24789145 - LTR41 LTR ERVL -588 185 1 715 226 18 12 chr13 94955911 94956075 -24788823 + AluJb SINE Alu 137 301 -11 27 62 0 0 chr13 94956485 94956533 -24788365 + AT_rich Low_complexity Low_complexity 1 48 0 216 0 0 0 chr13 94957502 94957526 -24787372 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr13 94958569 94958590 -24786308 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 94959063 94959085 -24785813 + AT_rich Low_complexity Low_complexity 1 22 0 754 296 55 41 chr13 94960214 94960633 -24784265 + L1ME3A LINE L1 5522 5946 -224 219 172 184 69 chr13 94961439 94961526 -24783372 - L2 LINE L2 0 3313 3217 448 114 0 38 chr13 94962007 94962125 -24782773 - L1PA8 LINE L1 0 6172 6085 35 0 0 0 chr13 94962152 94962187 -24782711 + AT_rich Low_complexity Low_complexity 1 35 0 1351 191 100 49 chr13 94963217 94963626 -24781272 + Tigger2a DNA MER2_type 3 432 -2 495 0 0 0 chr13 94963683 94963738 -24781160 + (CA)n Simple_repeat Simple_repeat 2 56 0 643 165 25 3 chr13 94964667 94964926 -24779972 + AluSx SINE Alu 1 253 -352 952 132 6 6 chr13 94964926 94965093 -24779805 + (GGAA)n Simple_repeat Simple_repeat 4 170 0 643 165 25 3 chr13 94965093 94965177 -24779721 + AluSx SINE Alu 253 605 0 34 72 0 0 chr13 94965343 94965412 -24779486 + AT_rich Low_complexity Low_complexity 1 69 0 23 33 0 0 chr13 94965579 94965609 -24779289 + AT_rich Low_complexity Low_complexity 1 30 0 201 274 36 48 chr13 94966232 94966316 -24778582 + MIR SINE MIR 58 140 -68 1909 149 54 11 chr13 94966454 94966803 -24778095 - THE1B LTR MaLR 0 364 1 843 266 34 30 chr13 94967375 94967612 -24777286 + MIR SINE MIR 12 249 -13 1855 80 87 63 chr13 94968102 94968401 -24776497 - AluSx SINE Alu -6 306 1 1467 196 34 3 chr13 94969500 94969791 -24775107 - AluJb SINE Alu -12 300 1 207 0 0 0 chr13 94973485 94973508 -24771390 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 291 287 90 112 chr13 94974022 94974153 -24770745 - MIR SINE MIR 0 262 130 387 0 0 0 chr13 94974153 94974196 -24770702 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2043 118 0 10 chr13 94974198 94974486 -24770412 - AluSg SINE Alu -25 285 1 291 287 90 112 chr13 94974486 94974619 -24770279 - MIR SINE MIR -133 129 1 8149 184 46 42 chr13 94975966 94976147 -24768751 - L1MA7 LINE L1 -1 6472 6293 713 208 8 0 chr13 94976147 94976277 -24768621 - FLAM_C SINE Alu -2 131 1 8149 184 46 42 chr13 94976277 94976460 -24768438 - L1MA7 LINE L1 -180 6293 6112 2070 103 3 45 chr13 94976460 94976771 -24768127 - AluSp SINE Alu -15 298 1 8149 184 46 42 chr13 94976771 94977016 -24767882 - L1MA7 LINE L1 -361 6112 5869 1701 171 49 30 chr13 94977016 94977384 -24767514 - THE1C LTR MaLR 0 375 1 8149 184 46 42 chr13 94977384 94977432 -24767466 - L1MA7 LINE L1 -604 5869 5823 1970 153 13 0 chr13 94977432 94977740 -24767158 - AluJo SINE Alu 0 312 1 8149 184 46 42 chr13 94977740 94979032 -24765866 - L1MA7 LINE L1 -650 5823 4478 2062 133 7 0 chr13 94979032 94979333 -24765565 - AluSx SINE Alu -9 303 1 8149 184 46 42 chr13 94979333 94979970 -24764928 - L1MA7 LINE L1 -1995 4478 3845 291 175 0 0 chr13 94979981 94980038 -24764860 + (TA)n Simple_repeat Simple_repeat 2 58 0 238 109 91 18 chr13 94980043 94980098 -24764800 + L1 LINE L1 3224 3282 -2864 225 213 16 0 chr13 94980238 94980299 -24764599 - L1MA7 LINE L1 -2409 3919 3858 364 223 0 43 chr13 94980339 94980433 -24764465 + L1MC4 LINE L1 6614 6703 -1339 321 296 23 0 chr13 94980371 94980459 -24764439 - L1MC4 LINE L1 -1339 6703 6614 * 231 167 0 0 chr13 94980473 94980515 -24764383 + (TA)n Simple_repeat Simple_repeat 1 42 0 6541 197 26 38 chr13 94980515 94983617 -24761281 - L1MA7 LINE L1 -2486 3842 706 1547 211 7 0 chr13 94983617 94983892 -24761006 - AluJb SINE Alu -35 277 1 6541 197 26 38 chr13 94983892 94984500 -24760398 - L1MA7 LINE L1 -5622 706 170 257 0 0 29 chr13 94984500 94984534 -24760364 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6541 197 26 38 chr13 94984534 94984703 -24760195 - L1MA7 LINE L1 -6158 170 1 291 235 126 26 chr13 94986099 94986228 -24758670 - L1ME3 LINE L1 -2 6162 6031 216 67 0 0 chr13 94987441 94987471 -24757427 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr13 94987567 94987589 -24757309 + AT_rich Low_complexity Low_complexity 1 22 0 425 351 41 0 chr13 94988287 94988458 -24756440 + MER5B DNA MER1_type 1 178 0 21 36 0 0 chr13 94988720 94988748 -24756150 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 94989625 94989646 -24755252 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 94992291 94992324 -24752574 + GC_rich Low_complexity Low_complexity 1 33 0 2160 126 0 3 chr13 94995233 94995543 -24749355 + AluSx SINE Alu 1 309 -3 677 225 19 25 chr13 94997670 94997830 -24747068 + MER2 DNA MER2_type 2 160 -185 221 368 70 18 chr13 94999360 94999474 -24745424 + L2 LINE L2 2911 3030 -283 193 269 90 15 chr13 94999538 94999605 -24745293 + MER5A DNA MER1_type 41 112 -77 252 317 29 39 chr13 94999629 94999733 -24745165 + L2 LINE L2 3191 3293 -20 243 278 298 8 chr13 94999893 95000148 -24744750 - Charlie2b DNA MER1_type -1733 1049 721 237 229 62 0 chr13 95001106 95001154 -24743744 + L2 LINE L2 3011 3061 -252 1117 203 156 74 chr13 95001252 95001281 -24743617 - MLT1D LTR MaLR -14 491 466 1850 89 16 16 chr13 95001281 95001539 -24743359 - AluSg SINE Alu -16 294 37 1117 203 156 74 chr13 95001539 95001957 -24742941 - MLT1D LTR MaLR -39 466 7 203 226 210 0 chr13 95002777 95002839 -24742059 + L2 LINE L2 3235 3309 -4 717 251 38 22 chr13 95006512 95006695 -24738203 - MIR SINE MIR -69 193 8 241 248 116 8 chr13 95006743 95006872 -24738026 + L1ME4a LINE L1 5978 6120 -1 555 231 96 82 chr13 95008483 95008656 -24736242 + MLT1J LTR MaLR 1 170 -341 1799 151 17 7 chr13 95008656 95008948 -24735950 + AluJb SINE Alu 7 301 -11 555 231 96 82 chr13 95008948 95009150 -24735748 + MLT1J LTR MaLR 170 381 -130 534 310 106 33 chr13 95010410 95010865 -24734033 - ERVL LTR ERVL -956 4808 4321 263 269 0 0 chr13 95010912 95010979 -24733919 + MLT1J LTR MaLR 400 466 -45 1289 211 127 57 chr13 95011711 95012368 -24732530 + LTR41 LTR ERVL 1 772 -1 397 282 99 33 chr13 95012852 95013033 -24731865 + MLT1J LTR MaLR 4 196 -315 21 71 0 0 chr13 95014288 95014330 -24730568 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr13 95014417 95014461 -24730437 + AT_rich Low_complexity Low_complexity 1 44 0 24 85 0 0 chr13 95014497 95014556 -24730342 + AT_rich Low_complexity Low_complexity 1 59 0 1302 268 105 14 chr13 95015781 95016353 -24728545 - MLT1E3 LTR MaLR 0 624 1 226 266 63 91 chr13 95017145 95017288 -24727610 + MIR SINE MIR 87 225 -37 455 241 96 37 chr13 95017487 95017755 -24727143 - LTR33A LTR ERVL -36 487 148 1289 274 160 14 chr13 95018254 95018772 -24726126 + MLT1G1 LTR MaLR 2 595 0 368 291 73 9 chr13 95019112 95019222 -24725676 - L2 LINE L2 -1 3312 3196 683 209 8 0 chr13 95019424 95019558 -24725340 + FLAM_C SINE Alu 1 135 -8 2162 54 0 4 chr13 95020037 95020296 -24724602 + AluY SINE Alu 37 294 -17 28 71 0 0 chr13 95020709 95020765 -24724133 + AT_rich Low_complexity Low_complexity 1 56 0 769 156 8 0 chr13 95020916 95021038 -24723860 - MSTB LTR MaLR -57 369 247 225 205 18 36 chr13 95021690 95021802 -24723096 + GA-rich Low_complexity Low_complexity 3 112 0 281 410 42 0 chr13 95021852 95021996 -24722902 + L2 LINE L2 3123 3272 0 240 290 58 0 chr13 95022105 95022174 -24722724 + MIR SINE MIR 4 76 -186 224 184 41 0 chr13 95022346 95022395 -24722503 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 329 311 0 0 chr13 95022395 95022485 -24722413 - L1MC4 LINE L1 -1339 6703 6614 * 355 289 0 0 chr13 95022409 95022499 -24722399 + L1MC4 LINE L1 6614 6703 -1339 240 35 0 0 chr13 95022499 95022528 -24722370 + (TA)n Simple_repeat Simple_repeat 1 29 0 1159 173 93 17 chr13 95024648 95024948 -24719950 - MER33 DNA MER1_type -1 323 1 618 253 51 22 chr13 95025412 95025590 -24719308 + MIR SINE MIR 17 199 -63 183 42 0 0 chr13 95027087 95027111 -24717787 + (TTTTTA)n Simple_repeat Simple_repeat 4 27 0 21 0 0 0 chr13 95027393 95027414 -24717484 + AT_rich Low_complexity Low_complexity 1 21 0 700 111 17 0 chr13 95027597 95027714 -24717184 + (GA)n Simple_repeat Simple_repeat 1 119 0 22 0 0 0 chr13 95028451 95028473 -24716425 + AT_rich Low_complexity Low_complexity 1 22 0 587 279 48 44 chr13 95028536 95028765 -24716133 + MIR SINE MIR 31 260 -2 26 30 0 0 chr13 95028969 95029002 -24715896 + AT_rich Low_complexity Low_complexity 1 33 0 196 300 0 0 chr13 95029122 95029172 -24715726 - L3 LINE CR1 -11 1566 1517 219 114 0 0 chr13 95030110 95030145 -24714753 + (T)n Simple_repeat Simple_repeat 1 35 0 213 281 79 67 chr13 95030637 95030726 -24714172 + L2 LINE L2 3168 3257 -15 1791 169 3 7 chr13 95031075 95031370 -24713528 + AluJb SINE Alu 2 295 -17 275 270 16 0 chr13 95031999 95032062 -24712836 - L2 LINE L2 -3 3269 3206 229 284 174 37 chr13 95032469 95032578 -24712320 - MER5A DNA MER1_type -63 126 3 203 43 43 43 chr13 95032625 95032672 -24712226 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr13 95032705 95032758 -24712140 + AT_rich Low_complexity Low_complexity 1 53 0 1005 198 104 135 chr13 95033243 95033400 -24711498 - MLT1C LTR MaLR -1 466 306 819 87 24 24 chr13 95033400 95033526 -24711372 - L1PA10 LINE L1 -2 6166 6041 1005 198 104 135 chr13 95033526 95033849 -24711049 - MLT1C LTR MaLR -161 306 1 376 301 40 23 chr13 95035066 95035239 -24709659 - MIR SINE MIR -15 247 72 189 0 0 0 chr13 95036632 95036653 -24708245 + (TG)n Simple_repeat Simple_repeat 1 21 0 255 122 0 0 chr13 95036783 95036832 -24708066 + (TCTCC)n Simple_repeat Simple_repeat 2 50 0 1891 159 0 7 chr13 95036832 95037133 -24707765 - AluJb SINE Alu -11 301 3 1332 188 40 67 chr13 95037408 95037737 -24707161 - LTR53 LTR ERVL -11 508 189 389 269 200 23 chr13 95038149 95038324 -24706574 + MIR SINE MIR 8 213 -49 2203 109 3 0 chr13 95038474 95038777 -24706121 - AluSg SINE Alu -6 304 1 837 242 51 19 chr13 95039913 95040128 -24704770 + MIR SINE MIR 20 241 -21 354 275 93 57 chr13 95041347 95041587 -24703311 - L1M2 LINE L1 -5930 919 464 389 292 139 23 chr13 95045308 95045524 -24699374 + MIR SINE MIR 22 262 0 640 280 140 15 chr13 95046042 95046371 -24698527 - MER90 LTR ERV1 -1 613 244 1066 210 5 18 chr13 95048017 95048236 -24696662 - MER20 DNA MER1_type -1 218 3 301 311 141 72 chr13 95048282 95048497 -24696401 + L2 LINE L2 2987 3231 -82 734 246 17 11 chr13 95048497 95048598 -24696300 + MER45A DNA AcHobo 2 106 -1475 1745 197 0 3 chr13 95048598 95048893 -24696005 - AluJb SINE Alu -18 294 1 734 246 17 11 chr13 95048893 95048966 -24695932 + MER45A DNA AcHobo 106 177 -1 301 311 141 72 chr13 95048966 95049056 -24695842 + L2 LINE L2 3231 3313 0 1739 232 42 40 chr13 95049185 95049715 -24695183 + LTR55 LTR ERV 1 531 -17 2751 157 20 29 chr13 95050734 95051295 -24693603 - L1MA8 LINE L1 -1 6290 5735 240 35 0 0 chr13 95052461 95052490 -24692408 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1816 155 0 0 chr13 95052523 95052827 -24692071 - L1PA16 LINE L1 -2 6164 5861 255 286 36 0 chr13 95052862 95052945 -24691953 + MIR SINE MIR 28 114 -94 2479 68 0 3 chr13 95053158 95053467 -24691431 - AluY SINE Alu -3 308 1 24 32 0 0 chr13 95053569 95053600 -24691298 + AT_rich Low_complexity Low_complexity 1 31 0 2050 84 0 0 chr13 95053676 95053957 -24690941 + AluSc SINE Alu 28 308 0 23 33 0 0 chr13 95054572 95054602 -24690296 + AT_rich Low_complexity Low_complexity 1 30 0 181 279 75 68 chr13 95054966 95055127 -24689771 + L2 LINE L2 2496 2657 -657 254 263 120 15 chr13 95055596 95055729 -24689169 + L1ME LINE L1 5561 5707 -414 1732 183 17 0 chr13 95055820 95056115 -24688783 + AluJo SINE Alu 1 300 -12 2468 109 16 19 chr13 95056913 95057289 -24687609 + THE1C LTR MaLR 1 375 0 843 226 49 30 chr13 95057890 95058155 -24686743 + LTR40c LTR ERVL 1 270 -195 238 328 94 23 chr13 95058439 95058567 -24686331 + MIR SINE MIR 48 184 -78 304 308 111 34 chr13 95058752 95058869 -24686029 + L2 LINE L2 3139 3264 -8 286 211 26 0 chr13 95059176 95059252 -24685646 - MER103 DNA DNA -22 144 67 198 0 0 0 chr13 95059275 95059297 -24685601 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3423 54 16 0 chr13 95059297 95059726 -24685172 - L1PA6 LINE L1 -18 6136 5701 207 307 50 36 chr13 95060019 95060159 -24684739 - L2 LINE L2 -965 2349 2208 305 244 63 39 chr13 95060585 95060712 -24684186 - MER65B LTR ERV1 -401 130 1 1174 233 4 8 chr13 95060715 95060968 -24683930 + Tigger7 DNA MER2_type 13 264 -2223 263 222 0 32 chr13 95060970 95061033 -24683865 + Tigger7 DNA MER2_type 2396 2456 -35 310 354 102 17 chr13 95061034 95061328 -24683570 - L2 LINE L2 -1243 2071 1753 337 314 58 17 chr13 95061402 95061574 -24683324 - L2 LINE L2 -449 2865 2687 1926 127 84 9 chr13 95063439 95063786 -24681112 + THE1C LTR MaLR 3 375 0 2011 161 59 12 chr13 95065108 95065174 -24679724 - MSTC LTR MaLR -5 423 362 2147 133 7 0 chr13 95065174 95065476 -24679422 + AluSx SINE Alu 1 304 -8 2011 161 59 12 chr13 95065476 95065813 -24679085 - MSTC LTR MaLR -66 362 1 296 277 0 0 chr13 95066035 95066100 -24678798 + MIR SINE MIR 4 68 -194 312 302 43 17 chr13 95066152 95066268 -24678630 + HAL1b LINE L1 311 429 -919 1613 116 45 57 chr13 95066366 95066702 -24678196 + L1MA7 LINE L1 5960 6291 0 2414 75 0 10 chr13 95067183 95067488 -24677410 - AluSx SINE Alu -10 302 1 208 179 26 0 chr13 95067947 95067986 -24676912 - L2 LINE L2 -18 3254 3215 2107 130 43 27 chr13 95068161 95068530 -24676368 + THE1C LTR MaLR 1 375 0 3776 119 121 3 chr13 95068531 95069195 -24675703 + THE1C-int LTR MaLR 2 743 -837 1948 187 38 28 chr13 95069198 95069735 -24675163 - MLT2A2 LTR ERVL -8 546 1 5267 117 30 6 chr13 95069737 95070558 -24674340 + THE1C-int LTR MaLR 740 1580 0 1803 160 50 22 chr13 95070560 95070923 -24673975 + THE1C LTR MaLR 3 375 0 801 249 91 32 chr13 95071089 95071374 -24673524 - LTR28 LTR ERV1 -718 302 1 2173 147 0 0 chr13 95071625 95071931 -24672967 - AluSx SINE Alu -5 307 2 212 312 129 11 chr13 95072418 95072511 -24672387 - MER5B DNA MER1_type 0 178 75 189 345 70 14 chr13 95072573 95072715 -24672183 - L2 LINE L2 -516 2798 2649 279 299 49 21 chr13 95073049 95073193 -24671705 + MLT1L LTR MaLR 130 277 -338 1921 160 0 14 chr13 95073603 95073891 -24671007 - AluJb SINE Alu -28 284 1 195 100 0 0 chr13 95074886 95074916 -24669982 + (CTG)n Simple_repeat Simple_repeat 3 32 0 438 20 0 0 chr13 95074916 95074967 -24669931 + (TG)n Simple_repeat Simple_repeat 2 52 0 297 274 147 10 chr13 95075687 95075789 -24669109 - L2 LINE L2 -16 3256 3141 38490 41 9 1 chr13 95075914 95081706 -24663192 - L1PA4 LINE L1 0 6155 317 705 55 0 0 chr13 95081707 95081798 -24663100 - L1PA4 LINE L1 -6048 98 8 692 309 204 25 chr13 95081803 95081876 -24663022 + L2 LINE L2 2068 2127 -1187 896 211 18 57 chr13 95081876 95082103 -24662795 + MER20 DNA MER1_type 1 218 -1 692 309 204 25 chr13 95082103 95082711 -24662187 + L2 LINE L2 2127 2871 -443 2231 254 73 51 chr13 95082724 95083927 -24660971 - L1ME LINE L1 -4815 1265 51 279 290 65 26 chr13 95084797 95084952 -24659946 - L1ME3A LINE L1 -6 6164 6004 1827 247 58 65 chr13 95085070 95085095 -24659803 - L1MC5 LINE L1 -430 7531 7507 644 192 23 0 chr13 95085095 95085225 -24659673 - L1MB1 LINE L1 0 6168 6036 1827 247 58 65 chr13 95085225 95085868 -24659030 - L1MC5 LINE L1 -454 7507 6863 1508 188 104 22 chr13 95085868 95086225 -24658673 + MLT1B LTR MaLR 5 390 0 1827 247 58 65 chr13 95086225 95086611 -24658287 - L1MC5 LINE L1 -1098 6863 6476 3335 191 39 32 chr13 95087571 95088180 -24656718 - MER44D DNA MER2_type -1883 604 115 2022 136 0 0 chr13 95088180 95088483 -24656415 - AluSx SINE Alu 0 307 5 3335 191 39 32 chr13 95088483 95088599 -24656299 - MER44D DNA MER2_type -2372 115 1 208 388 10 38 chr13 95089619 95089828 -24655070 - L2 LINE L2 -338 2976 2774 1419 66 0 6 chr13 95092072 95092255 -24652643 - L1PA8 LINE L1 -13 6159 5978 24 53 0 0 chr13 95092749 95092787 -24652111 + AT_rich Low_complexity Low_complexity 1 38 0 36 70 0 0 chr13 95093438 95093509 -24651389 + AT_rich Low_complexity Low_complexity 1 71 0 2110 142 0 0 chr13 95094325 95094628 -24650270 - AluSg SINE Alu -7 303 1 1625 198 3 13 chr13 95094683 95094996 -24649902 - AluJb SINE Alu -2 310 1 22 94 0 0 chr13 95095422 95095486 -24649412 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr13 95095517 95095540 -24649358 + AT_rich Low_complexity Low_complexity 1 23 0 189 74 0 0 chr13 95096413 95096440 -24648458 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 205 247 82 27 chr13 95096533 95096606 -24648292 - L2 LINE L2 -1 3312 3236 328 217 43 0 chr13 95097549 95097618 -24647280 - FLAM_A SINE Alu -46 87 16 427 293 84 45 chr13 95097721 95098190 -24646708 - L1ME3A LINE L1 -295 5867 5377 22 80 0 0 chr13 95099214 95099264 -24645634 + AT_rich Low_complexity Low_complexity 1 50 0 957 288 130 18 chr13 95100555 95100993 -24643905 - L2 LINE L2 0 3313 2827 583 173 0 10 chr13 95101081 95101185 -24643713 + L1MB2 LINE L1 4018 4120 -2026 * 1596 255 98 18 chr13 95101167 95101716 -24643182 + L1MB2 LINE L1 5344 5936 -235 * 3956 74 4 20 chr13 95101389 95101932 -24642966 + L1PB1 LINE L1 5618 6151 0 530 177 0 0 chr13 95101941 95102037 -24642861 + AluJ/FRAM SINE Alu 217 312 0 221 210 97 0 chr13 95102092 95102154 -24642744 - L2 LINE L2 -719 2595 2528 2040 128 3 32 chr13 95103002 95103314 -24641584 - AluSx SINE Alu -9 303 1 22 0 0 0 chr13 95103315 95103337 -24641561 + AT_rich Low_complexity Low_complexity 1 22 0 589 235 30 116 chr13 95104099 95104367 -24640531 + MIR SINE MIR 18 262 0 23 54 0 0 chr13 95105614 95105651 -24639247 + AT_rich Low_complexity Low_complexity 1 37 0 1124 191 68 56 chr13 95105754 95106094 -24638804 + MER2 DNA MER2_type 1 344 0 4555 200 103 12 chr13 95106166 95107731 -24637167 + L1MD2 LINE L1 4632 6344 -15 537 207 60 11 chr13 95107932 95108047 -24636851 - L1ME1 LINE L1 -5 6161 6047 229 313 73 20 chr13 95108047 95108197 -24636701 - L1MA8 LINE L1 -299 5992 5835 1346 231 51 10 chr13 95108242 95108653 -24636245 + MER114 LTR ERV 1 428 -220 2537 133 23 5 chr13 95108731 95109130 -24635768 + LTR57 LTR ERVL 6 411 0 228 267 9 38 chr13 95110165 95110270 -24634628 + CT-rich Low_complexity Low_complexity 2 103 0 309 254 144 55 chr13 95110436 95110637 -24634261 - L1M4 LINE L1 -3060 3086 2868 354 350 38 0 chr13 95110743 95110903 -24633995 - MLT1I LTR MaLR -151 258 93 1750 201 86 29 chr13 95111008 95111450 -24633448 + MLT1C LTR MaLR 1 467 0 24 53 0 0 chr13 95111491 95111529 -24633369 + AT_rich Low_complexity Low_complexity 1 38 0 1143 153 0 17 chr13 95111587 95111763 -24633135 - AluJb SINE Alu -10 302 130 1901 183 0 0 chr13 95111812 95112123 -24632775 - AluSx SINE Alu -1 311 1 656 177 7 54 chr13 95112131 95112278 -24632620 - FLAM_C SINE Alu -1 142 3 2051 113 4 0 chr13 95112482 95112757 -24632141 + AluSx SINE Alu 11 286 -26 561 299 73 0 chr13 95115030 95115207 -24629691 + MIR SINE MIR 18 207 -55 1824 120 60 83 chr13 95115640 95116024 -24628874 - THE1C LTR MaLR 0 375 1 277 265 0 36 chr13 95118195 95118278 -24626620 - MLT1I LTR MaLR -39 370 291 348 308 0 10 chr13 95118446 95118550 -24626348 - MLT1H LTR MaLR -304 245 143 1072 183 14 14 chr13 95118785 95118998 -24625900 - MER20 DNA MER1_type -2 217 5 256 352 46 28 chr13 95119038 95119146 -24625752 - MIR SINE MIR -57 151 42 210 304 13 25 chr13 95119452 95119531 -24625367 - L2 LINE L2 -261 3011 2934 473 299 96 48 chr13 95119923 95120297 -24624601 - L2 LINE L2 -693 2621 2230 240 73 109 0 chr13 95121494 95121549 -24623349 + LTR66 LTR ERVL 379 439 -171 421 172 21 0 chr13 95121549 95121642 -24623256 + (TA)n Simple_repeat Simple_repeat 1 95 0 1882 145 7 3 chr13 95121642 95121939 -24622959 - AluSx SINE Alu -14 298 1 22 56 0 0 chr13 95121939 95121975 -24622923 + AT_rich Low_complexity Low_complexity 1 36 0 368 298 19 0 chr13 95123540 95123644 -24621254 - ERVL LTR ERVL -693 5071 4966 797 223 74 106 chr13 95124806 95125183 -24619715 + MLT1A1 LTR MaLR 1 365 0 418 277 206 7 chr13 95125209 95125364 -24619534 + MER5A DNA MER1_type 4 189 0 976 211 10 10 chr13 95126455 95126663 -24618235 - MER6B DNA MER2_type 0 210 3 181 333 52 21 chr13 95126981 95127077 -24617821 + MIR SINE MIR 88 186 -76 191 283 0 0 chr13 95127124 95127177 -24617721 - MIR SINE MIR -14 248 196 222 228 18 0 chr13 95127278 95127335 -24617563 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 309 165 0 202 chr13 95127696 95127805 -24617093 + MER5A DNA MER1_type 19 105 -84 2278 86 0 20 chr13 95127940 95128244 -24616654 - AluSx SINE Alu -14 298 1 2528 158 17 36 chr13 95128378 95128854 -24616044 - LTR24 LTR ERV1 0 467 1 1496 191 119 47 chr13 95129800 95130270 -24614628 - LTR48B LTR ERV1 -11 633 130 6592 104 55 20 chr13 95131138 95132159 -24612739 + MER11C LTR ERVK 1 1057 -14 832 238 135 66 chr13 95134249 95134679 -24610219 - MLT1C LTR MaLR -8 618 1 5601 286 90 29 chr13 95134817 95134963 -24609935 + L2 LINE L2 568 704 -2609 2324 183 36 39 chr13 95134963 95135483 -24609415 - MLT2B1 LTR ERVL 0 520 2 5601 286 90 29 chr13 95135483 95135930 -24608968 + L2 LINE L2 704 1122 -2191 2638 97 13 0 chr13 95135930 95136322 -24608576 - L1MA2 LINE L1 0 6304 5908 5601 286 90 29 chr13 95136322 95136605 -24608293 + L2 LINE L2 1122 1386 -1927 2113 94 0 58 chr13 95136605 95136913 -24607985 - AluSc SINE Alu -17 292 3 5601 286 90 29 chr13 95136913 95137053 -24607845 + L2 LINE L2 1386 1516 -1797 305 23 0 23 chr13 95137053 95137096 -24607802 + (TTA)n Simple_repeat Simple_repeat 2 43 0 5601 286 90 29 chr13 95137096 95138361 -24606537 + L2 LINE L2 1516 2995 -318 2328 95 0 0 chr13 95138474 95138778 -24606120 + AluSx SINE Alu 9 312 0 4185 109 30 12 chr13 95138990 95139653 -24605245 + L1MA2 LINE L1 5630 6304 0 1007 88 27 0 chr13 95140531 95140679 -24604219 - L1MA2 LINE L1 0 6304 6153 220 343 30 30 chr13 95140717 95140886 -24604012 + L2 LINE L2 2722 2890 -424 180 0 0 0 chr13 95140965 95140985 -24603913 + (T)n Simple_repeat Simple_repeat 1 20 0 286 282 97 86 chr13 95141306 95141447 -24603451 - L2 LINE L2 -557 2757 2619 1784 129 4 11 chr13 95141447 95141719 -24603179 + AluSx SINE Alu 34 303 -9 286 282 97 86 chr13 95141719 95142009 -24602889 - L2 LINE L2 -695 2619 2321 205 188 62 47 chr13 95142622 95142686 -24602212 + L2 LINE L2 3170 3234 -79 576 304 186 12 chr13 95142711 95143033 -24601865 + L2 LINE L2 2936 3313 0 344 167 0 0 chr13 95143188 95143248 -24601650 + MER53 DNA DNA 16 75 -114 2221 127 33 30 chr13 95143478 95143841 -24601057 + THE1B LTR MaLR 1 364 0 7471 35 2 0 chr13 95143970 95145119 -24599779 - L1PA4 LINE L1 0 6155 5006 332 357 152 9 chr13 95145431 95145641 -24599257 - MIR SINE MIR -4 258 19 1917 146 0 0 chr13 95146225 95146545 -24598353 + AluSc SINE Alu 1 320 0 411 314 176 14 chr13 95146566 95146856 -24598042 + L1M4 LINE L1 3615 3951 -2195 1644 171 25 0 chr13 95147402 95147676 -24597222 + AluJo SINE Alu 2 282 -30 207 69 0 0 chr13 95147680 95147709 -24597189 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 300 250 90 80 chr13 95148340 95148528 -24596370 - HAL1 LINE L1 -2314 193 4 270 370 76 0 chr13 95148801 95148920 -24595978 - MIR SINE MIR -132 130 3 29 28 0 0 chr13 95148976 95149012 -24595886 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr13 95149477 95149505 -24595393 + AT_rich Low_complexity Low_complexity 1 28 0 2210 144 16 22 chr13 95149785 95150032 -24594866 - MLT1A1 LTR MaLR 0 365 119 2388 96 25 25 chr13 95150032 95150396 -24594502 - THE1B LTR MaLR 0 364 1 2210 144 16 22 chr13 95150396 95150515 -24594383 - MLT1A1 LTR MaLR -246 119 1 615 353 29 23 chr13 95150861 95151207 -24593691 + L3 LINE CR1 863 1210 -367 201 259 103 0 chr13 95151239 95151297 -24593601 + L3 LINE CR1 1314 1377 -200 254 283 48 83 chr13 95151562 95151707 -24593191 - MIR SINE MIR -118 144 5 23 33 0 0 chr13 95151940 95151970 -24592928 + AT_rich Low_complexity Low_complexity 1 30 0 708 311 25 0 chr13 95152954 95153192 -24591706 - MIR SINE MIR -12 250 7 327 243 16 24 chr13 95153362 95153492 -24591406 - L1P5 LINE L1 -538 5583 5461 24 32 0 0 chr13 95153777 95153808 -24591090 + AT_rich Low_complexity Low_complexity 1 31 0 686 285 78 38 chr13 95153865 95154444 -24590454 - L1MEc LINE L1 -4784 2338 1737 852 283 82 8 chr13 95154448 95154816 -24590082 - L1MEc LINE L1 -4900 1523 1129 268 305 119 35 chr13 95155277 95155680 -24589218 - L1MEc LINE L1 -5956 467 31 894 95 0 68 chr13 95155732 95155880 -24589018 - L1PA10 LINE L1 -9 6159 6022 4343 207 55 25 chr13 95155882 95156080 -24588818 - L1MD2 LINE L1 -9 6350 6159 225 0 0 0 chr13 95156080 95156105 -24588793 + (TG)n Simple_repeat Simple_repeat 2 26 0 4343 207 55 25 chr13 95156105 95156184 -24588714 - L1MD2 LINE L1 -200 6159 6084 2201 122 0 0 chr13 95156184 95156478 -24588420 + AluSx SINE Alu 1 294 -18 4343 207 55 25 chr13 95156478 95157291 -24587607 - L1MD2 LINE L1 -275 6084 5227 826 193 50 40 chr13 95157661 95157863 -24587035 - MER3 DNA MER1_type 0 209 6 436 268 105 0 chr13 95158113 95158266 -24586632 - MIR SINE MIR -15 247 79 252 254 0 16 chr13 95158354 95158417 -24586481 - MLT1D LTR MaLR -313 192 131 2660 82 6 3 chr13 95158502 95158856 -24586042 - THE1A LTR MaLR 0 355 1 11272 105 3 0 chr13 95158871 95160400 -24584498 - THE1A-int LTR MaLR -44 1536 3 2594 91 14 0 chr13 95160402 95160752 -24584146 - THE1A LTR MaLR 0 355 1 809 201 0 7 chr13 95160951 95161090 -24583808 + FRAM SINE Alu 12 149 -27 29 47 0 0 chr13 95161151 95161194 -24583704 + AT_rich Low_complexity Low_complexity 1 43 0 2373 83 0 3 chr13 95161278 95161578 -24583320 - AluY SINE Alu -12 299 1 1769 156 167 14 chr13 95162061 95162432 -24582466 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr13 95162831 95162852 -24582046 + AT_rich Low_complexity Low_complexity 1 21 0 1654 206 32 11 chr13 95163017 95163379 -24581519 + MLT2D LTR ERVL 1 424 -40 354 205 0 0 chr13 95163382 95163460 -24581438 + (TG)n Simple_repeat Simple_repeat 1 78 0 283 80 140 0 chr13 95163460 95163510 -24581388 + MLT2D LTR ERVL 464 520 0 4007 190 59 25 chr13 95164322 95165148 -24579750 - MER21B LTR ERV1 -9 854 1 3511 77 18 8 chr13 95165257 95165749 -24579149 - L1PA6 LINE L1 -13 6141 5645 4028 157 65 16 chr13 95165783 95166569 -24578329 + L1MA9 LINE L1 5459 6282 -30 30 100 0 0 chr13 95166678 95166778 -24578120 + AT_rich Low_complexity Low_complexity 1 100 0 316 204 167 68 chr13 95166854 95166986 -24577912 - MIR3 SINE MIR -32 176 32 29 47 0 0 chr13 95167154 95167197 -24577701 + AT_rich Low_complexity Low_complexity 1 43 0 1816 162 55 25 chr13 95169415 95169779 -24575119 - THE1C LTR MaLR 0 375 1 1336 138 5 14 chr13 95169779 95169997 -24574901 - THE1C-int LTR MaLR 0 1580 1365 22 35 0 0 chr13 95171323 95171352 -24573546 + AT_rich Low_complexity Low_complexity 1 29 0 349 96 57 40 chr13 95171503 95171680 -24573218 + (TA)n Simple_repeat Simple_repeat 1 180 0 203 95 32 32 chr13 95171766 95171829 -24573069 + (TA)n Simple_repeat Simple_repeat 2 64 0 290 324 185 12 chr13 95174078 95174251 -24570647 + MIR SINE MIR 48 250 -12 27 81 0 0 chr13 95174335 95174397 -24570501 + AT_rich Low_complexity Low_complexity 1 62 0 210 340 0 0 chr13 95175017 95175070 -24569828 + MIR3 SINE MIR 122 174 -34 280 323 3 10 chr13 95175720 95175844 -24569054 - MIR SINE MIR -71 137 16 252 0 0 0 chr13 95175868 95175896 -24569002 + (A)n Simple_repeat Simple_repeat 1 28 0 2263 110 10 0 chr13 95175970 95176271 -24568627 + AluSx SINE Alu 1 304 -8 8068 147 14 37 chr13 95178498 95179889 -24565009 - THE1C-int LTR MaLR -218 1362 3 1634 176 55 25 chr13 95179891 95180255 -24564643 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr13 95180491 95180520 -24564378 + AT_rich Low_complexity Low_complexity 1 29 0 348 354 105 0 chr13 95180608 95180837 -24564061 + MIR SINE MIR 8 260 -2 404 280 131 42 chr13 95181482 95181650 -24563248 - MER63A DNA MER1_type -1 209 27 21 57 0 0 chr13 95182021 95182056 -24562842 + AT_rich Low_complexity Low_complexity 1 35 0 1742 134 7 34 chr13 95183808 95184128 -24560770 + AluJb SINE Alu 1 312 0 209 313 78 0 chr13 95185583 95185647 -24559251 + MIR SINE MIR 81 149 -113 206 391 107 26 chr13 95185904 95185993 -24558905 + L2 LINE L2 2459 2539 -733 212 0 36 0 chr13 95185993 95186021 -24558877 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 206 391 107 26 chr13 95186021 95186496 -24558402 + L2 LINE L2 2539 3070 -202 198 103 0 0 chr13 95186738 95186767 -24558131 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1163 265 106 3 chr13 95187379 95187737 -24557161 + L1MB8 LINE L1 16 410 -6132 854 163 57 110 chr13 95187737 95187983 -24556915 - MLT1B LTR MaLR -60 330 98 362 200 88 0 chr13 95187983 95188063 -24556835 + MLT1C LTR MaLR 379 465 -2 2928 224 53 17 chr13 95188072 95189092 -24555806 + L1MB8 LINE L1 3282 4338 -2306 1167 199 13 8 chr13 95189076 95189312 -24555586 + L1MB8 LINE L1 6117 6353 -329 * 2222 91 0 23 chr13 95189806 95190113 -24554785 - AluY SINE Alu -11 300 1 304 243 45 36 chr13 95190186 95190408 -24554490 + LTR37B LTR ERV1 245 468 0 599 281 79 79 chr13 95190485 95190851 -24554047 - MLT1K LTR MaLR -28 560 195 23 0 0 0 chr13 95191064 95191087 -24553811 + AT_rich Low_complexity Low_complexity 1 23 0 1192 232 76 0 chr13 95191297 95191586 -24553312 + MER110 LTR ERV1 46 356 -135 1080 189 44 37 chr13 95191589 95191859 -24553039 + L1MB8 LINE L1 6395 6666 -10 225 186 34 0 chr13 95192222 95192281 -24552617 + L1MB7 LINE L1 6115 6175 -9 22 0 0 0 chr13 95192420 95192442 -24552456 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 95193039 95193060 -24551838 + AT_rich Low_complexity Low_complexity 1 21 0 34 24 0 0 chr13 95193239 95193280 -24551618 + AT_rich Low_complexity Low_complexity 1 41 0 2028 132 3 16 chr13 95193901 95194075 -24550823 - AluSp SINE Alu -6 307 137 2511 62 0 0 chr13 95194075 95194380 -24550518 - AluY SINE Alu -6 305 1 2028 132 3 16 chr13 95194380 95194516 -24550382 - AluSp SINE Alu -176 137 1 21 36 0 0 chr13 95195473 95195501 -24549397 + AT_rich Low_complexity Low_complexity 1 28 0 2070 222 83 17 chr13 95195932 95196464 -24548434 - MLT1F1 LTR MaLR 0 567 1 1210 216 14 11 chr13 95196761 95197039 -24547859 - L1MB1 LINE L1 -3 6165 5887 21 36 0 0 chr13 95197732 95197760 -24547138 + AT_rich Low_complexity Low_complexity 1 28 0 399 341 100 42 chr13 95197895 95198464 -24546434 - L2 LINE L2 -448 2866 2265 7789 211 45 9 chr13 95198492 95200213 -24544685 + L1MC1 LINE L1 3246 5119 -1214 2024 144 13 0 chr13 95200213 95200511 -24544387 + AluSq SINE Alu 1 302 -11 7789 211 45 9 chr13 95200511 95201750 -24543148 + L1MC1 LINE L1 5119 6313 -20 389 342 22 38 chr13 95201870 95201916 -24542982 + MIR SINE MIR 79 124 -138 2182 130 49 0 chr13 95201916 95202263 -24542635 + THE1B LTR MaLR 1 364 0 389 342 22 38 chr13 95202263 95202400 -24542498 + MIR SINE MIR 124 259 -3 3648 111 0 4 chr13 95203585 95204098 -24540800 - MER9 LTR ERVK 0 511 1 568 200 10 120 chr13 95204106 95204306 -24540592 + MER104 DNA Tc2 3 180 0 317 226 6 17 chr13 95205473 95205654 -24539244 + (CA)n Simple_repeat Simple_repeat 2 180 0 920 137 43 0 chr13 95206275 95206436 -24538462 - L1MD1 LINE L1 0 6242 6075 841 141 104 6 chr13 95206684 95206847 -24538051 + LTR47A LTR ERVL 261 439 -13 2294 130 14 27 chr13 95206847 95207216 -24537682 - THE1B LTR MaLR 0 364 1 1438 194 103 21 chr13 95207233 95207563 -24537335 - L1MD2 LINE L1 -279 6080 5724 1403 66 6 0 chr13 95207568 95207751 -24537147 + L1PB1 LINE L1 5608 5791 -360 185 178 22 0 chr13 95207751 95207796 -24537102 + (TA)n Simple_repeat Simple_repeat 1 46 0 * 243 103 0 0 chr13 95207795 95207834 -24537064 + (CA)n Simple_repeat Simple_repeat 2 40 0 2621 95 3 3 chr13 95207834 95208203 -24536695 + L1PB1 LINE L1 5782 6150 -1 1718 202 11 10 chr13 95208217 95208616 -24536282 - L1MD2 LINE L1 -459 5662 5313 1363 296 21 4 chr13 95209130 95209609 -24535289 - MER110 LTR ERV1 0 491 5 685 246 16 16 chr13 95209611 95209794 -24535104 + LTR41 LTR ERVL 15 197 -576 589 216 52 97 chr13 95209999 95210276 -24534622 + LTR41 LTR ERVL 511 795 0 940 321 63 43 chr13 95210575 95211833 -24533065 + HERVL LTR ERVL 352 1704 -4060 1774 311 69 33 chr13 95212011 95212852 -24532046 + HERVL LTR ERVL 1706 2576 -3188 292 238 9 95 chr13 95212870 95212975 -24531923 + HERVL LTR ERVL 2343 2438 -3216 243 0 0 0 chr13 95213413 95213440 -24531458 + (A)n Simple_repeat Simple_repeat 1 27 0 1199 126 224 55 chr13 95213688 95213943 -24530955 - AluSg SINE Alu -2 298 1 28 29 0 0 chr13 95216098 95216133 -24528765 + AT_rich Low_complexity Low_complexity 1 35 0 2124 124 0 0 chr13 95216231 95216514 -24528384 - AluSx SINE Alu -29 283 1 1431 232 50 34 chr13 95216950 95217402 -24527496 - MLT1C LTR MaLR -2 465 1 2160 108 7 3 chr13 95217508 95217805 -24527093 + AluSc SINE Alu 1 298 -11 1575 144 54 90 chr13 95219045 95219434 -24525464 + THE1C LTR MaLR 1 375 0 546 229 166 13 chr13 95219451 95219608 -24525290 + MER5A DNA MER1_type 4 184 -5 1868 163 20 7 chr13 95219969 95220275 -24524623 - AluSx SINE Alu -2 310 1 683 218 38 50 chr13 95220552 95220791 -24524107 - MER106A DNA MER1_type 0 236 1 1335 194 35 51 chr13 95220836 95221207 -24523691 + MLT1A1 LTR MaLR 1 365 0 1010 175 101 14 chr13 95221495 95221712 -24523186 + MER46A DNA MER2_type 1 236 0 196 298 18 18 chr13 95221844 95221901 -24522997 - MIR SINE MIR -158 104 48 1539 132 0 5 chr13 95222733 95222952 -24521946 + AluSg/x SINE Alu 66 283 -27 306 237 0 0 chr13 95222952 95223028 -24521870 + (TA)n Simple_repeat Simple_repeat 1 76 0 226 255 0 85 chr13 95223035 95223129 -24521769 - L1MC4 LINE L1 -1341 6701 6616 267 289 0 0 chr13 95223149 95223239 -24521659 - L1MC4 LINE L1 -1339 6703 6614 312 250 23 0 chr13 95223253 95223341 -24521557 + L1MC4 LINE L1 6614 6703 -1339 241 326 0 0 chr13 95223278 95223367 -24521531 - L1MC4 LINE L1 -1340 6702 6614 * 235 286 0 22 chr13 95223396 95223487 -24521411 - L1MC4 LINE L1 -1340 6702 6614 214 211 0 0 chr13 95223487 95223525 -24521373 + (TA)n Simple_repeat Simple_repeat 2 39 0 2107 183 31 17 chr13 95223570 95223990 -24520908 - MSTB LTR MaLR 0 426 1 185 200 33 0 chr13 95225099 95225159 -24519739 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 244 248 106 97 chr13 95225435 95225548 -24519350 + MIR SINE MIR 32 145 -63 233 333 58 36 chr13 95226089 95226227 -24518671 + MER5B DNA MER1_type 1 141 -37 1500 154 61 32 chr13 95227287 95227599 -24517299 + L1MA8 LINE L1 5949 6269 -22 241 286 167 49 chr13 95227757 95228002 -24516896 - LTR33 LTR ERVL -44 477 204 3044 200 16 2 chr13 95229063 95229618 -24515280 + MLT1F1 LTR MaLR 1 563 -4 180 0 0 0 chr13 95229898 95229918 -24514980 + (TA)n Simple_repeat Simple_repeat 2 21 0 1878 158 3 3 chr13 95229988 95230286 -24514612 + AluJb SINE Alu 1 298 -14 1998 103 7 0 chr13 95230843 95231116 -24513782 - AluSg SINE Alu -2 308 34 2188 102 0 0 chr13 95231289 95231574 -24513324 - AluY SINE Alu -26 285 1 21 57 0 0 chr13 95231590 95231625 -24513273 + AT_rich Low_complexity Low_complexity 1 35 0 2417 126 25 0 chr13 95232054 95232419 -24512479 - THE1C LTR MaLR 0 375 2 204 67 0 0 chr13 95233016 95233046 -24511852 + (CA)n Simple_repeat Simple_repeat 1 30 0 192 77 0 0 chr13 95233639 95233665 -24511233 + (CAA)n Simple_repeat Simple_repeat 2 27 0 781 282 81 38 chr13 95233804 95233955 -24510943 + L1ME3 LINE L1 3796 3939 -2207 1710 154 44 0 chr13 95233955 95234251 -24510647 + AluSx SINE Alu 1 308 0 781 282 81 38 chr13 95234251 95234595 -24510303 + L1ME3 LINE L1 3939 4313 -1833 399 246 18 53 chr13 95234788 95234959 -24509939 + L1ME3 LINE L1 4572 4736 -1410 1870 162 73 7 chr13 95235127 95235497 -24509401 + MLT1B LTR MaLR 1 500 -5 1699 268 115 32 chr13 95235688 95235808 -24509090 + L1ME3 LINE L1 5039 5148 -1014 2160 98 7 7 chr13 95235808 95236103 -24508795 - AluSq SINE Alu -18 295 1 1699 268 115 32 chr13 95236103 95236913 -24507985 + L1ME3 LINE L1 5148 6044 -118 525 123 0 0 chr13 95237158 95237231 -24507667 + HY4 scRNA scRNA 1 73 -20 24 0 0 0 chr13 95237261 95237285 -24507613 + AT_rich Low_complexity Low_complexity 1 24 0 1655 138 150 6 chr13 95237569 95237724 -24507174 - THE1C LTR MaLR -1 374 243 564 15 0 0 chr13 95237724 95237789 -24507109 + (TA)n Simple_repeat Simple_repeat 1 65 0 285 29 0 0 chr13 95237788 95237822 -24507076 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 1655 138 150 6 chr13 95237789 95237993 -24506905 - THE1C LTR MaLR -132 243 1 338 319 29 0 chr13 95239578 95239727 -24505171 + MIR SINE MIR 45 197 -65 239 229 84 24 chr13 95240230 95240313 -24504585 + L2 LINE L2 1816 1903 -1411 194 314 23 12 chr13 95240680 95240766 -24504132 + L2 LINE L2 2561 2647 -667 29 60 0 0 chr13 95241257 95241307 -24503591 + AT_rich Low_complexity Low_complexity 1 50 0 609 259 161 5 chr13 95242112 95242317 -24502581 + MIR SINE MIR 6 242 -20 3118 248 17 18 chr13 95242513 95243554 -24501344 - L1PA12 LINE L1 -4349 3235 2182 339 268 0 0 chr13 95243786 95243883 -24501015 - L1PA12 LINE L1 -5399 2182 2086 992 322 56 44 chr13 95243985 95244615 -24500283 - L1PA12 LINE L1 -6150 1424 788 1550 190 31 0 chr13 95245903 95246192 -24498706 - AluJo SINE Alu -12 300 3 542 14 0 28 chr13 95246194 95246266 -24498632 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 1873 115 33 4 chr13 95246268 95246538 -24498360 - AluSc SINE Alu -31 278 1 318 239 34 39 chr13 95246569 95246774 -24498124 - L1MEc LINE L1 -3129 3086 2883 592 306 77 29 chr13 95246808 95247118 -24497780 + L2 LINE L2 1604 1928 -1386 944 248 65 52 chr13 95247128 95247596 -24497302 - L1MEc LINE L1 -3551 2664 2232 2694 259 62 12 chr13 95247644 95248497 -24496401 - L1MEc LINE L1 -5465 931 36 26 30 0 0 chr13 95249562 95249595 -24495303 + AT_rich Low_complexity Low_complexity 1 33 0 21 89 0 0 chr13 95249854 95249910 -24494988 + AT_rich Low_complexity Low_complexity 1 56 0 480 160 50 10 chr13 95250264 95250364 -24494534 - L1PB3 LINE L1 0 6154 6051 2087 118 0 7 chr13 95251158 95251445 -24493453 - AluSg1 SINE Alu -24 285 1 396 0 0 0 chr13 95251530 95251574 -24493324 + (GA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr13 95251573 95251593 -24493305 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 541 122 0 0 chr13 95251641 95251715 -24493183 + AluY SINE Alu 217 290 -21 313 115 0 0 chr13 95251715 95251776 -24493122 + L1MA9 LINE L1 6252 6312 0 497 91 0 0 chr13 95251845 95251911 -24492987 - Alu SINE Alu -24 286 221 3594 117 27 0 chr13 95252658 95253171 -24491727 + MER1A DNA MER1_type 1 527 0 19899 25 0 0 chr13 95255175 95258311 -24486587 - L1PA2 LINE L1 0 6155 3021 198 283 33 17 chr13 95259553 95259613 -24485285 - L2 LINE L2 -51 3221 3161 1301 256 110 10 chr13 95260784 95261174 -24483724 - MER70B LTR ERVL -146 432 4 481 275 44 19 chr13 95264184 95264344 -24480554 + MIR SINE MIR 29 192 -70 2016 154 54 14 chr13 95264389 95264739 -24480159 - THE1B LTR MaLR 0 364 1 512 303 148 33 chr13 95264862 95265384 -24479514 - L2 LINE L2 -913 2401 1820 1598 209 3 13 chr13 95265553 95265855 -24479043 - AluJb SINE Alu -13 299 1 288 293 0 0 chr13 95266167 95266242 -24478656 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 583 309 14 34 chr13 95266526 95266733 -24478165 - MLT1J LTR MaLR -239 272 70 269 393 67 32 chr13 95268306 95268619 -24476279 - L2 LINE L2 0 3272 2949 300 172 0 0 chr13 95268845 95268903 -24475995 + CT-rich Low_complexity Low_complexity 3 60 0 257 254 60 0 chr13 95268926 95268993 -24475905 - L2 LINE L2 -52 3261 3191 1595 196 53 6 chr13 95269000 95269321 -24475577 - MER58B DNA MER1_type -5 336 1 533 259 41 66 chr13 95269941 95270138 -24474760 + MIR SINE MIR 45 236 -26 238 210 32 0 chr13 95270157 95270219 -24474679 + (CTA)n Simple_repeat Simple_repeat 1 64 0 234 352 117 21 chr13 95271176 95271321 -24473577 + MIR SINE MIR 89 247 -15 412 290 173 0 chr13 95272490 95272652 -24472246 + MLT1K LTR MaLR 3 192 -396 2164 150 56 25 chr13 95272951 95272986 -24471912 - MLT2A2 LTR ERVL 0 554 522 279 0 0 0 chr13 95272986 95273017 -24471881 + (TA)n Simple_repeat Simple_repeat 2 32 0 2164 150 56 25 chr13 95273017 95273504 -24471394 - MLT2A2 LTR ERVL -32 522 1 1655 227 51 42 chr13 95274512 95275006 -24469892 - LTR55 LTR ERV -50 498 1 766 297 129 46 chr13 95275484 95276413 -24468485 + L1M4 LINE L1 2327 3332 -2814 203 293 102 41 chr13 95277539 95277686 -24467212 + MIR SINE MIR 35 190 -72 2746 50 0 47 chr13 95277870 95278236 -24466662 - L1PA5 LINE L1 0 6154 5831 2909 9 0 0 chr13 95278236 95278554 -24466344 - AluYb8 SINE Alu 0 318 1 2746 50 0 47 chr13 95278554 95278600 -24466298 - L1PA5 LINE L1 -323 5831 5784 544 96 0 4 chr13 95278600 95278683 -24466215 + L1ME LINE L1 5514 5594 -568 25 65 0 0 chr13 95279215 95279261 -24465637 + AT_rich Low_complexity Low_complexity 1 46 0 301 136 30 0 chr13 95279699 95279765 -24465133 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 300 310 52 45 chr13 95279801 95279956 -24464942 + MIR SINE MIR 6 161 -101 350 248 204 9 chr13 95279996 95280109 -24464789 - MER5A DNA MER1_type 0 189 55 217 241 48 36 chr13 95280386 95280469 -24464429 - MIR3 SINE MIR -20 188 105 23 0 0 0 chr13 95280560 95280583 -24464315 + AT_rich Low_complexity Low_complexity 1 23 0 2056 135 0 0 chr13 95280585 95280873 -24464025 + AluSq SINE Alu 1 288 -25 198 128 0 0 chr13 95282049 95282088 -24462810 + (T)n Simple_repeat Simple_repeat 1 39 0 21 71 0 0 chr13 95285369 95285411 -24459487 + AT_rich Low_complexity Low_complexity 1 42 0 303 322 35 7 chr13 95286460 95286603 -24458295 - HAL1b LINE L1 -11 1337 1191 535 209 85 48 chr13 95286994 95287220 -24457678 - L1M4 LINE L1 -1481 4665 4432 23 0 0 0 chr13 95287262 95287285 -24457613 + AT_rich Low_complexity Low_complexity 1 23 0 254 177 0 16 chr13 95287623 95287685 -24457213 + (TG)n Simple_repeat Simple_repeat 2 62 0 1379 199 33 29 chr13 95287899 95288206 -24456692 + AluJo SINE Alu 3 310 -2 2126 152 0 0 chr13 95289580 95289890 -24455008 - AluSx SINE Alu -2 310 1 413 338 116 9 chr13 95290983 95291208 -24453690 - MIR SINE MIR -13 249 1 2872 103 30 0 chr13 95291380 95291894 -24453004 + L1PA10 LINE L1 5159 5683 -485 1085 73 22 0 chr13 95291897 95292034 -24452864 + AluSg/x SINE Alu 157 296 -16 3352 77 10 38 chr13 95292034 95292270 -24452628 + L1PA10 LINE L1 5677 5894 -274 2336 57 0 3 chr13 95292270 95292591 -24452307 + AluY SINE Alu 1 320 0 3352 77 10 38 chr13 95292591 95292848 -24452050 + L1PA10 LINE L1 5894 6157 -11 502 288 81 40 chr13 95293519 95293915 -24450983 - L2 LINE L2 -1098 2216 1805 605 221 13 7 chr13 95294621 95294774 -24450124 + MER33 DNA MER1_type 51 204 -120 1667 198 128 16 chr13 95294774 95295148 -24449750 - MLT1C LTR MaLR 0 467 52 333 100 20 0 chr13 95295232 95295282 -24449616 - MLT1C LTR MaLR -416 51 1 532 152 76 0 chr13 95295282 95295387 -24449511 + MER33 DNA MER1_type 200 312 -12 495 280 218 1 chr13 95295404 95295610 -24449288 - MIR SINE MIR 0 262 15 549 281 88 0 chr13 95296975 95297146 -24447752 - MER5A DNA MER1_type -3 186 1 32 26 0 0 chr13 95297723 95297762 -24447136 + AT_rich Low_complexity Low_complexity 1 39 0 393 22 0 0 chr13 95298292 95298338 -24446560 + (TG)n Simple_repeat Simple_repeat 1 46 0 734 304 39 26 chr13 95298648 95299106 -24445792 + LTR16B LTR ERVL 1 464 0 254 333 0 0 chr13 95299414 95299480 -24445418 - L2 LINE L2 -1 3312 3247 345 287 33 27 chr13 95299778 95299928 -24444970 - L1ME4a LINE L1 -25 6096 5946 238 298 71 12 chr13 95299983 95300067 -24444831 - L2 LINE L2 -19 3294 3206 248 304 119 53 chr13 95300089 95300123 -24444775 + MIR SINE MIR 2 32 -230 2532 115 3 8 chr13 95300123 95300498 -24444400 + THE1C LTR MaLR 3 375 0 248 304 119 53 chr13 95300498 95300706 -24444192 + MIR SINE MIR 32 260 -2 1092 250 60 60 chr13 95301141 95301605 -24443293 - L1MD2 LINE L1 0 6359 5896 182 36 0 36 chr13 95301745 95301773 -24443125 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr13 95301975 95301997 -24442901 + (T)n Simple_repeat Simple_repeat 1 22 0 2213 105 7 0 chr13 95302663 95302959 -24441939 + AluSp SINE Alu 2 299 -14 183 255 39 0 chr13 95303172 95303223 -24441675 - MER5A DNA MER1_type -50 139 87 3687 186 49 6 chr13 95303297 95303994 -24440904 - MER44D DNA MER2_type -5 600 2 2071 206 84 11 chr13 95304087 95304549 -24440349 + LTR44 LTR ERV1 24 519 0 1880 80 19 0 chr13 95304549 95304813 -24440085 + L1MA1 LINE L1 5945 6213 -89 469 233 33 43 chr13 95305009 95305217 -24439681 - L1MA10 LINE L1 -1 6331 5976 21 36 0 0 chr13 95305731 95305759 -24439139 + AT_rich Low_complexity Low_complexity 1 28 0 332 309 14 65 chr13 95308063 95308202 -24436696 - L2 LINE L2 -1 3271 3140 358 298 126 85 chr13 95308297 95308609 -24436289 - L2 LINE L2 -557 2757 2412 934 188 52 28 chr13 95308609 95308822 -24436076 + MER20 DNA MER1_type 1 218 -1 358 298 126 85 chr13 95308822 95309040 -24435858 - L2 LINE L2 -902 2412 2205 21 0 0 0 chr13 95309087 95309108 -24435790 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr13 95309288 95309336 -24435562 + AT_rich Low_complexity Low_complexity 1 48 0 211 309 62 34 chr13 95309914 95310080 -24434818 + L2 LINE L2 2793 2960 -353 408 216 0 23 chr13 95310981 95311069 -24433829 + MLT1F1 LTR MaLR 25 110 -483 2001 196 31 8 chr13 95311090 95311575 -24433323 - MER89 LTR ERV1 0 559 1 976 244 107 3 chr13 95311577 95311868 -24433030 + MLT1F1 LTR MaLR 247 567 0 319 237 195 0 chr13 95312132 95312250 -24432648 - L2 LINE L2 -14 3299 3159 749 343 89 0 chr13 95312744 95313199 -24431699 - L2 LINE L2 -141 3172 2679 1844 249 40 18 chr13 95313200 95313751 -24431147 - L2 LINE L2 -1012 2302 1740 1623 189 3 22 chr13 95314675 95314988 -24429910 - AluJo SINE Alu -5 307 1 552 248 0 0 chr13 95315079 95315200 -24429698 - FLAM_A SINE Alu -12 121 1 2290 74 0 10 chr13 95316730 95317029 -24427869 - AluY SINE Alu -15 296 1 240 268 236 45 chr13 95317147 95317304 -24427594 - L3 LINE CR1 -5 1572 1386 229 315 45 15 chr13 95317743 95317943 -24426955 - L1M4 LINE L1 -1542 4604 4399 442 299 151 3 chr13 95318127 95318485 -24426413 - L1M4 LINE L1 -1981 4165 3755 286 299 208 13 chr13 95319421 95319575 -24425323 + MER91A DNA MER1_type 5 188 -8 181 234 43 0 chr13 95319604 95319651 -24425247 + MIR SINE MIR 96 144 -64 1020 121 0 0 chr13 95322563 95322720 -24422178 - L1PA8A LINE L1 -1757 4389 4233 6192 85 10 11 chr13 95322720 95324454 -24420444 + L1PA8A LINE L1 4408 6131 0 30 0 0 0 chr13 95324892 95324922 -24419976 + AT_rich Low_complexity Low_complexity 1 30 0 203 273 0 0 chr13 95325054 95325098 -24419800 + CT-rich Low_complexity Low_complexity 2 45 0 815 216 40 0 chr13 95325378 95325554 -24419344 + MLT2B1 LTR ERVL 3 185 -335 478 222 0 28 chr13 95325602 95325746 -24419152 + (CATATA)n Simple_repeat Simple_repeat 5 144 0 238 224 17 0 chr13 95325756 95325814 -24419084 + L1MC4 LINE L1 2006 2064 -4362 * 257 215 9 24 chr13 95325813 95325913 -24418985 + L1MC4 LINE L1 2006 6983 -1339 207 111 28 0 chr13 95325913 95325949 -24418949 + (TA)n Simple_repeat Simple_repeat 2 38 0 2194 119 0 0 chr13 95327285 95327595 -24417303 - AluSx SINE Alu -2 310 1 21 0 0 0 chr13 95329886 95329907 -24414991 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 95330393 95330420 -24414478 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 514 75 0 0 chr13 95330420 95330487 -24414411 - L1PA7 LINE L1 -16 6138 6072 4523 215 101 30 chr13 95330698 95331393 -24413505 + Charlie1a DNA MER1_type 1 646 -2115 2155 116 0 0 chr13 95331393 95331696 -24413202 + AluSg SINE Alu 1 303 -7 4523 215 101 30 chr13 95331696 95332359 -24412539 + Charlie1a DNA MER1_type 646 1455 0 407 312 22 7 chr13 95332654 95332792 -24412106 + L2 LINE L2 220 359 -2955 533 261 28 14 chr13 95333265 95333407 -24411491 + MIR SINE MIR 15 158 -104 228 360 45 0 chr13 95333457 95333568 -24411330 + MIR SINE MIR 147 262 0 467 305 20 7 chr13 95333586 95333737 -24411161 - MIR SINE MIR -15 247 95 258 272 146 70 chr13 95333975 95334133 -24410765 - MIR SINE MIR -66 196 27 21 0 0 0 chr13 95334147 95334168 -24410730 + AT_rich Low_complexity Low_complexity 1 21 0 1349 254 73 29 chr13 95334186 95334663 -24410235 + MLT1D LTR MaLR 1 498 -7 2214 313 119 21 chr13 95334915 95336310 -24408588 + L2 LINE L2 1547 3073 -240 910 191 75 15 chr13 95336316 95336346 -24408552 + AluJb SINE Alu 86 113 -199 261 0 0 0 chr13 95336346 95336375 -24408523 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 910 191 75 15 chr13 95336375 95336543 -24408355 + AluJb SINE Alu 113 296 -16 391 306 167 19 chr13 95336736 95336952 -24407946 + L2 LINE L2 3066 3313 0 26 30 0 0 chr13 95337446 95337479 -24407419 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr13 95338265 95338315 -24406583 + AT_rich Low_complexity Low_complexity 1 50 0 1455 219 0 4 chr13 95339839 95340118 -24404780 - Tigger3b DNA MER2_type 0 1231 954 1368 184 4 36 chr13 95340122 95340399 -24404499 + AluJo SINE Alu 21 288 -24 492 48 0 0 chr13 95340401 95340464 -24404434 + (TA)n Simple_repeat Simple_repeat 2 64 0 5248 120 62 23 chr13 95340486 95341400 -24403498 - Tigger3b DNA MER2_type -281 950 1 279 286 59 59 chr13 95342492 95342611 -24402287 + MER5A DNA MER1_type 40 158 -31 28 29 0 0 chr13 95343139 95343174 -24401724 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 95343684 95343707 -24401191 + AT_rich Low_complexity Low_complexity 1 23 0 2073 136 0 7 chr13 95343858 95344166 -24400732 - AluSx SINE Alu -4 308 3 441 347 23 23 chr13 95345312 95345528 -24399370 + MIR SINE MIR 14 229 -33 943 91 16 0 chr13 95346011 95346132 -24398766 - AluSp SINE Alu -189 124 2 300 353 139 23 chr13 95346251 95346424 -24398474 - MER91A DNA MER1_type 0 196 4 2136 107 7 7 chr13 95346600 95346899 -24397999 - AluY SINE Alu -12 299 1 429 307 63 24 chr13 95348100 95348305 -24396593 + MIR SINE MIR 12 224 -38 2272 104 3 0 chr13 95348368 95348665 -24396233 - AluSg SINE Alu -12 298 1 24 32 0 0 chr13 95348724 95348755 -24396143 + AT_rich Low_complexity Low_complexity 1 31 0 2050 97 0 4 chr13 95349123 95349390 -24395508 - AluSg SINE Alu -9 301 36 353 299 87 52 chr13 95351721 95351952 -24392946 - L3 LINE CR1 -149 1428 1190 7612 164 88 46 chr13 95352325 95352774 -24392124 - L1MA9 LINE L1 -34 6278 5849 318 67 0 0 chr13 95352774 95352819 -24392079 + (TG)n Simple_repeat Simple_repeat 2 46 0 7612 164 88 46 chr13 95352819 95355194 -24389704 - L1MA9 LINE L1 -463 5849 3329 1323 231 33 38 chr13 95355202 95355601 -24389297 - L1MA9 LINE L1 -3491 2655 2259 2267 116 0 3 chr13 95357092 95357403 -24387495 - AluSg SINE Alu 0 310 1 381 286 57 23 chr13 95357539 95357801 -24387097 + LTR37B LTR ERV1 197 467 -1 2514 186 36 28 chr13 95358362 95358566 -24386332 + L1MB7 LINE L1 5277 5478 -700 1725 186 10 0 chr13 95358566 95358872 -24386026 + AluJo SINE Alu 1 309 -3 2514 186 36 28 chr13 95358872 95359247 -24385651 + L1MB7 LINE L1 5478 5861 -317 1259 199 64 90 chr13 95359248 95359624 -24385274 - MER93b LTR ERV1 -7 366 1 1508 162 17 20 chr13 95359630 95359932 -24384966 + L1MB7 LINE L1 5876 6176 -8 265 211 28 56 chr13 95360294 95360365 -24384533 - L2 LINE L2 0 3313 3245 523 355 90 39 chr13 95360396 95360985 -24383913 + L2 LINE L2 2614 3211 -61 198 378 0 0 chr13 95361049 95361123 -24383775 + L2 LINE L2 2589 2662 -652 5059 52 3 6 chr13 95362206 95362843 -24382055 + L1PA6 LINE L1 5520 6154 0 513 191 0 0 chr13 95363523 95363628 -24381270 + (TG)n Simple_repeat Simple_repeat 2 106 0 1978 129 0 0 chr13 95364133 95364413 -24380485 + AluSx SINE Alu 1 280 -32 267 31 0 0 chr13 95364413 95364445 -24380453 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 306 312 209 5 chr13 95364858 95365073 -24379825 + L2 LINE L2 2287 2545 -769 362 336 43 51 chr13 95365416 95365809 -24379089 + L1ME4a LINE L1 5608 5997 -124 2210 187 8 60 chr13 95365996 95366509 -24378389 - MER66B LTR ERV1 0 486 1 1602 203 0 17 chr13 95366972 95366995 -24377903 - AluJo SINE Alu -16 296 274 279 0 0 0 chr13 95366995 95367026 -24377872 + (TC)n Simple_repeat Simple_repeat 2 32 0 1602 203 0 17 chr13 95367026 95367303 -24377595 - AluJo SINE Alu -38 274 1 241 246 149 51 chr13 95367383 95367841 -24377057 - L1ME LINE L1 -408 5754 5258 2288 93 7 0 chr13 95368788 95369079 -24375819 - AluSq SINE Alu -20 293 1 2206 89 0 0 chr13 95369324 95369634 -24375264 - AluY SINE Alu 0 310 1 240 35 0 0 chr13 95370286 95370315 -24374583 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 225 409 24 8 chr13 95370515 95370642 -24374256 + L2 LINE L2 42 170 -3144 241 333 10 10 chr13 95370696 95370795 -24374103 + L2 LINE L2 819 917 -2397 1545 299 89 76 chr13 95371348 95372269 -24372629 + L2 LINE L2 1700 2607 -706 767 40 0 10 chr13 95372269 95372369 -24372529 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 2009 138 0 0 chr13 95372376 95372659 -24372239 - AluSq SINE Alu -30 283 1 1545 299 89 76 chr13 95372659 95373278 -24371620 + L2 LINE L2 2612 3303 -10 249 263 0 0 chr13 95373807 95373864 -24371034 + CT-rich Low_complexity Low_complexity 5 61 0 22 0 0 0 chr13 95374381 95374403 -24370495 + AT_rich Low_complexity Low_complexity 1 22 0 1891 140 6 32 chr13 95375796 95376111 -24368787 + AluJb SINE Alu 6 312 0 245 250 0 17 chr13 95377047 95377107 -24367791 - MIR SINE MIR -110 152 94 187 374 116 23 chr13 95377399 95377752 -24367146 + L2 LINE L2 2462 2847 -467 206 346 68 30 chr13 95378657 95378790 -24366108 + L2 LINE L2 3175 3312 -1 390 369 17 0 chr13 95378825 95379001 -24365897 - MIR3 SINE MIR -7 201 23 440 193 42 113 chr13 95380083 95380295 -24364603 + MER3 DNA MER1_type 10 206 -3 1073 343 58 10 chr13 95381225 95381806 -24363092 - ERVL LTR ERVL -1811 3953 3345 373 356 100 8 chr13 95381890 95382140 -24362758 - ERVL LTR ERVL -2529 3125 2853 1131 270 34 17 chr13 95382322 95382678 -24362220 - ERVL LTR ERVL -3052 2602 2241 236 89 0 22 chr13 95382719 95382764 -24362134 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 10988 104 12 4 chr13 95382765 95384356 -24360542 - L1PA8 LINE L1 -25 6147 4539 2029 105 14 0 chr13 95384356 95384657 -24360241 - AluSg SINE Alu 0 305 1 10988 104 12 4 chr13 95384657 95385511 -24359387 - L1PA8 LINE L1 -1633 4539 3693 731 309 67 7 chr13 95385524 95385929 -24358969 - ERVL LTR ERVL -3523 2241 1726 456 240 91 40 chr13 95385960 95386135 -24358763 - HAL1 LINE L1 -1415 1092 909 24 32 0 0 chr13 95387388 95387419 -24357479 + AT_rich Low_complexity Low_complexity 1 31 0 656 148 65 51 chr13 95387957 95388174 -24356724 - LTR54B LTR ERV1 -1 497 278 216 0 0 0 chr13 95388174 95388198 -24356700 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1024 73 0 0 chr13 95388205 95388329 -24356569 + AluY SINE Alu 159 282 -29 932 124 222 34 chr13 95388329 95388563 -24356335 - LTR54B LTR ERV1 -220 278 1 1250 226 112 55 chr13 95389043 95389586 -24355312 - MER34C LTR ERV1 0 585 12 384 285 70 40 chr13 95389691 95390063 -24354835 - L1MEc LINE L1 -4102 2294 1912 226 260 143 0 chr13 95390235 95390312 -24354586 - L1MEc LINE L1 -4710 1686 1599 273 318 95 8 chr13 95390465 95390591 -24354307 + LTR16A1 LTR ERVL 2 138 -319 2185 222 74 8 chr13 95390601 95391102 -24353796 - MLT1F LTR MaLR -2 540 7 910 195 123 38 chr13 95391164 95391425 -24353473 + LTR16A1 LTR ERVL 170 452 -5 25 51 0 0 chr13 95397947 95397986 -24346912 + AT_rich Low_complexity Low_complexity 1 39 0 549 268 38 25 chr13 95399170 95399327 -24345571 + MER5B DNA MER1_type 1 159 -19 216 211 19 58 chr13 95399327 95399379 -24345519 + L3 LINE CR1 1510 1559 -18 337 326 58 84 chr13 95399749 95400096 -24344802 - L2 LINE L2 -8 3264 2927 3357 99 31 10 chr13 95400259 95400782 -24344116 - L1PB4 LINE L1 0 6156 5623 1288 118 37 0 chr13 95400812 95401026 -24343872 - L1P5 LINE L1 -497 5659 5438 2061 113 3 14 chr13 95401043 95401335 -24343563 - AluSx SINE Alu -23 289 1 2188 73 66 0 chr13 95401899 95402186 -24342712 - AluSp SINE Alu -7 306 1 843 329 16 12 chr13 95402563 95402885 -24342013 - MLT1I LTR MaLR 0 409 87 1563 172 7 23 chr13 95403131 95403433 -24341465 - MLT1B LTR MaLR 0 390 94 339 25 0 0 chr13 95403454 95403494 -24341404 + (TATG)n Simple_repeat Simple_repeat 2 41 0 826 122 0 0 chr13 95403494 95403609 -24341289 - FLAM_C SINE Alu -18 115 1 300 135 211 154 chr13 95403609 95403713 -24341185 - MLT1B LTR MaLR -280 110 1 383 275 22 0 chr13 95404034 95404125 -24340773 + MER5A DNA MER1_type 20 112 -77 191 381 0 24 chr13 95404181 95404265 -24340633 + L2 LINE L2 2295 2376 -938 320 252 50 120 chr13 95404268 95404510 -24340388 - L2 LINE L2 0 3313 3089 208 341 110 0 chr13 95405121 95405212 -24339686 + L2 LINE L2 3140 3240 -32 222 268 189 74 chr13 95405439 95405629 -24339269 - L2 LINE L2 -558 2756 2545 288 207 0 0 chr13 95406305 95406363 -24338535 + FLAM_A SINE Alu 76 133 0 243 103 0 0 chr13 95408113 95408152 -24336746 + (GA)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr13 95408484 95408509 -24336389 + AT_rich Low_complexity Low_complexity 1 25 0 2419 120 11 16 chr13 95408626 95409002 -24335896 + THE1C LTR MaLR 2 375 0 21 0 0 0 chr13 95409207 95409228 -24335670 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 95409301 95409325 -24335573 + AT_rich Low_complexity Low_complexity 1 24 0 243 155 17 52 chr13 95409599 95409657 -24335241 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 23 33 0 0 chr13 95410398 95410428 -24334470 + AT_rich Low_complexity Low_complexity 1 30 0 3095 107 27 0 chr13 95410461 95410940 -24333958 - L1MA3 LINE L1 0 6305 5814 281 342 65 22 chr13 95412290 95412474 -24332424 - L3 LINE CR1 -1266 311 120 3180 171 96 14 chr13 95412514 95413267 -24331631 - MER21B LTR ERV1 -10 853 1 1301 180 87 57 chr13 95415026 95415359 -24329539 + MER2 DNA MER2_type 2 344 0 300 263 46 40 chr13 95417035 95417210 -24327688 + L1MC5 LINE L1 7736 7911 -50 379 284 9 17 chr13 95417262 95417378 -24327520 - L2 LINE L2 -30 3283 3169 507 259 77 70 chr13 95417659 95417805 -24327093 + MIR SINE MIR 2 152 -110 2187 113 3 0 chr13 95417805 95418097 -24326801 + AluSg SINE Alu 1 293 -17 507 259 77 70 chr13 95418097 95418209 -24326689 + MIR SINE MIR 152 262 0 183 80 0 0 chr13 95420234 95420259 -24324639 + (TC)n Simple_repeat Simple_repeat 2 26 0 1885 204 11 19 chr13 95420259 95420627 -24324271 - MLT2D LTR ERVL -49 365 1 237 331 242 22 chr13 95420705 95420977 -24323921 - L2 LINE L2 -243 3070 2738 2825 235 54 34 chr13 95421021 95421783 -24323115 - MER21B LTR ERV1 -44 819 43 451 197 0 0 chr13 95421790 95421861 -24323037 - MER21B LTR ERV1 -774 89 19 360 43 0 0 chr13 95421921 95421967 -24322931 + (TG)n Simple_repeat Simple_repeat 1 46 0 560 291 81 31 chr13 95422348 95422671 -24322227 + L1MC/D LINE L1 5293 5631 -2177 221 324 7 65 chr13 95423991 95424130 -24320768 - MER5A DNA MER1_type -56 133 3 27 0 0 0 chr13 95425131 95425158 -24319740 + AT_rich Low_complexity Low_complexity 1 27 0 281 241 25 38 chr13 95425588 95425667 -24319231 - L2 LINE L2 -1 3312 3235 697 245 128 19 chr13 95425918 95426183 -24318715 + LTR16A1 LTR ERVL 160 453 -4 195 272 144 40 chr13 95426197 95426370 -24318528 - L2 LINE L2 -256 3016 2826 184 271 146 10 chr13 95426934 95427030 -24317868 + L2 LINE L2 3103 3211 -102 317 307 135 42 chr13 95427701 95427893 -24317005 - MIR SINE MIR -48 214 5 22 35 0 0 chr13 95428852 95428881 -24316017 + AT_rich Low_complexity Low_complexity 1 29 0 180 376 36 51 chr13 95429671 95429976 -24314922 + L2 LINE L2 2593 2892 -422 5975 148 80 19 chr13 95429976 95430571 -24314327 - Tigger3b DNA MER2_type -1797 1231 674 1866 175 0 6 chr13 95430571 95430885 -24314013 - AluJb SINE Alu 0 312 1 5975 148 80 19 chr13 95430885 95431448 -24313450 - Tigger3b DNA MER2_type -2354 674 2 180 376 36 51 chr13 95431448 95431533 -24313365 + L2 LINE L2 2892 2977 -337 23 0 0 0 chr13 95431655 95431678 -24313220 + AT_rich Low_complexity Low_complexity 1 23 0 225 184 0 41 chr13 95431678 95431727 -24313171 + CT-rich Low_complexity Low_complexity 2 48 0 350 327 44 31 chr13 95432782 95432941 -24311957 - MIR SINE MIR 0 262 102 2131 112 46 22 chr13 95433510 95433876 -24311022 - THE1C LTR MaLR 0 375 1 357 357 25 25 chr13 95433948 95434105 -24310793 - MIR SINE MIR -88 174 18 1656 114 0 4 chr13 95434251 95434507 -24310391 + AluSq SINE Alu 57 311 0 2018 133 0 26 chr13 95434940 95435242 -24309656 - AluSx SINE Alu -18 294 1 2226 105 3 0 chr13 95435943 95436239 -24308659 + AluSp SINE Alu 1 297 -16 2091 276 69 61 chr13 95436386 95436711 -24308187 + L2 LINE L2 1852 2173 -1141 1146 167 9 48 chr13 95436711 95436938 -24307960 - MER20 DNA MER1_type -1 218 1 2091 276 69 61 chr13 95436938 95437497 -24307401 + L2 LINE L2 2173 2748 -566 2266 107 0 0 chr13 95437497 95437795 -24307103 - AluSg SINE Alu -12 298 1 2091 276 69 61 chr13 95437795 95437924 -24306974 + L2 LINE L2 2748 2874 -440 353 301 10 21 chr13 95438093 95438286 -24306612 - L1M4 LINE L1 -1033 5113 4923 2170 241 70 14 chr13 95438287 95439029 -24305869 - L1M4 LINE L1 -1577 4569 3786 313 320 48 24 chr13 95439037 95439243 -24305655 + L1ME LINE L1 5481 5691 -430 1744 185 33 39 chr13 95439579 95439942 -24304956 - MLT1A2 LTR MaLR -13 361 1 2214 109 3 0 chr13 95440433 95440735 -24304163 + AluSx SINE Alu 1 303 -9 1070 202 123 104 chr13 95441194 95441625 -24303273 - MSTB2 LTR MaLR 0 457 19 858 159 12 0 chr13 95441651 95441814 -24303084 - L1M2 LINE L1 -804 5487 5323 366 291 51 0 chr13 95441932 95442049 -24302849 - L2 LINE L2 0 3313 3191 516 272 56 97 chr13 95442682 95443024 -24301874 - LTR33A LTR ERVL -172 351 24 1843 331 47 11 chr13 95443432 95444319 -24300579 - ERVL LTR ERVL -395 5369 4451 2432 117 24 8 chr13 95444516 95444885 -24300013 - THE1C LTR MaLR 0 375 1 1865 138 46 30 chr13 95445069 95445438 -24299460 - THE1C LTR MaLR 0 375 1 221 116 0 23 chr13 95446428 95446471 -24298427 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 24 32 0 0 chr13 95446552 95446583 -24298315 + AT_rich Low_complexity Low_complexity 1 31 0 295 276 79 53 chr13 95446747 95446975 -24297923 - HAL1 LINE L1 0 2507 2274 4882 106 41 11 chr13 95447448 95448205 -24296693 - LTR17 LTR ERV1 0 780 1 24 0 0 0 chr13 95448848 95448872 -24296026 + AT_rich Low_complexity Low_complexity 1 24 0 2191 142 11 11 chr13 95449643 95450009 -24294889 - L1PA11 LINE L1 -1 6173 5808 425 185 0 7 chr13 95450368 95450486 -24294412 + MER20 DNA MER1_type 11 217 -2 4226 147 141 16 chr13 95451293 95451573 -24293325 - Tigger3(Golem) DNA MER2_type -181 2848 2604 5434 16 2 0 chr13 95451573 95452200 -24292698 - L1PA2 LINE L1 0 6155 5528 4226 147 141 16 chr13 95452200 95452917 -24291981 - Tigger3(Golem) DNA MER2_type -425 2604 2 475 259 19 0 chr13 95452975 95453083 -24291815 - L2 LINE L2 -15 3298 3189 2114 115 27 32 chr13 95454323 95454697 -24290201 - L1MA2 LINE L1 0 6304 5933 22 56 0 0 chr13 95454763 95454799 -24290099 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr13 95454826 95454869 -24290029 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 95455870 95455899 -24288999 + AT_rich Low_complexity Low_complexity 1 29 0 2093 270 131 33 chr13 95455899 95458168 -24286730 - L1ME2 LINE L1 -9 6224 3732 * 6066 187 25 12 chr13 95458166 95459465 -24285433 - L1 LINE L1 -1932 4214 2900 323 225 0 0 chr13 95459477 95459548 -24285350 + L1 LINE L1 3333 3403 -2743 388 275 228 5 chr13 95459562 95459966 -24284932 - L1ME2 LINE L1 -2687 3528 3035 2951 137 6 23 chr13 95459992 95460517 -24284381 - L1MA5A LINE L1 0 6297 5782 368 83 33 0 chr13 95460525 95460585 -24284313 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 1801 145 69 0 chr13 95460585 95460875 -24284023 - AluSx SINE Alu -2 310 1 885 115 0 0 chr13 95460875 95461005 -24283893 - L1MA5A LINE L1 -510 5787 5658 2003 285 58 10 chr13 95461019 95462374 -24282524 - L1ME2 LINE L1 -3221 2994 1601 902 184 22 66 chr13 95462413 95462641 -24282257 + MER20 DNA MER1_type 2 219 0 630 257 92 5 chr13 95462764 95462970 -24281928 - L1MC4 LINE L1 -238 7804 7581 366 225 50 6 chr13 95463018 95463178 -24281720 + CT-rich Low_complexity Low_complexity 3 169 0 664 270 24 11 chr13 95463183 95463413 -24281485 - L1MC4a LINE L1 -355 7453 7250 234 314 12 47 chr13 95463495 95463581 -24281317 + L2 LINE L2 3228 3310 -3 189 74 0 0 chr13 95463616 95463643 -24281255 + (TC)n Simple_repeat Simple_repeat 2 28 0 274 103 0 0 chr13 95463991 95464030 -24280868 + MLT2C1 LTR ERVL 349 387 -10 2198 98 3 29 chr13 95464962 95465277 -24279621 - AluSg SINE Alu -3 307 1 26 0 0 0 chr13 95465436 95465462 -24279436 + AT_rich Low_complexity Low_complexity 1 26 0 295 346 15 0 chr13 95465761 95465891 -24279007 + CT-rich Low_complexity Low_complexity 5 136 0 2049 120 3 3 chr13 95465944 95466236 -24278662 - AluSp SINE Alu -21 292 1 2097 187 49 2 chr13 95466391 95466798 -24278100 + MSTB LTR MaLR 1 426 0 2166 106 3 0 chr13 95467006 95467298 -24277600 + AluSp SINE Alu 5 297 -16 485 291 80 75 chr13 95468161 95468493 -24276405 - L2 LINE L2 -1203 2111 1773 1528 218 7 0 chr13 95468493 95468782 -24276116 + AluJb SINE Alu 1 291 -21 485 291 80 75 chr13 95468782 95469037 -24275861 - L2 LINE L2 -1541 1773 1521 1812 117 0 58 chr13 95469097 95469422 -24275476 - AluSg SINE Alu 0 313 6 1997 129 139 13 chr13 95469716 95470096 -24274802 - MSTA LTR MaLR 0 428 1 1589 174 42 28 chr13 95470931 95471287 -24273611 - MER46B DNA MER2_type 0 236 1 1905 111 17 3 chr13 95471299 95471587 -24273311 + L1PA14 LINE L1 5868 6159 -2 284 224 35 17 chr13 95473314 95473372 -24271526 + MIR SINE MIR 9 67 -195 1426 199 13 16 chr13 95473388 95473425 -24271473 - AluJb SINE Alu -6 306 270 2186 135 31 6 chr13 95473425 95473780 -24271118 + THE1B LTR MaLR 1 364 0 1426 199 13 16 chr13 95473780 95474049 -24270849 - AluJb SINE Alu -42 270 1 461 259 91 14 chr13 95474051 95474194 -24270704 + MIR SINE MIR 93 246 -16 414 217 62 31 chr13 95474196 95474325 -24270573 - MER94 DNA DNA 0 134 2 388 299 86 12 chr13 95474372 95474697 -24270201 - L1ME4a LINE L1 -185 5936 5588 576 259 25 6 chr13 95475782 95475944 -24268954 - L1MD3 LINE L1 -10 7985 7821 2387 84 43 14 chr13 95475945 95476290 -24268608 + THE1A LTR MaLR 1 355 0 11196 102 10 1 chr13 95476290 95477857 -24267041 + THE1A-int LTR MaLR 1 1580 0 2562 104 0 3 chr13 95477857 95478213 -24266685 + THE1A LTR MaLR 1 355 0 924 216 30 5 chr13 95478532 95478731 -24266167 - AluJo SINE Alu -106 206 3 2065 138 0 0 chr13 95478860 95479156 -24265742 - AluSg SINE Alu -14 296 1 341 291 112 0 chr13 95480914 95481048 -24263850 - L3 LINE CR1 -1003 574 426 2467 74 0 3 chr13 95481361 95481672 -24263226 - AluY SINE Alu -1 310 1 535 321 24 19 chr13 95481838 95482047 -24262851 + MIR SINE MIR 48 257 -5 955 306 50 66 chr13 95482934 95483822 -24261076 - L1ME3A LINE L1 -17 6153 5281 2139 122 0 3 chr13 95483916 95484220 -24260678 - AluSx SINE Alu -9 303 1 509 304 73 47 chr13 95484697 95485147 -24259751 - L1ME3A LINE L1 -1207 4939 4478 21 0 0 0 chr13 95486350 95486371 -24258527 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 95486871 95486893 -24258005 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr13 95487042 95487077 -24257821 + AT_rich Low_complexity Low_complexity 1 35 0 234 191 95 0 chr13 95488409 95488472 -24256426 + L1MEc LINE L1 1069 1137 -5259 2377 107 38 14 chr13 95488814 95489180 -24255718 + THE1C LTR MaLR 1 375 0 501 71 48 0 chr13 95489458 95489542 -24255356 - L1PA7 LINE L1 -2 6152 6065 1709 222 6 6 chr13 95489707 95490059 -24254839 - MLT1A1 LTR MaLR -13 352 1 253 289 51 32 chr13 95490184 95490340 -24254558 - L1ME3A LINE L1 -2383 3763 3605 24 67 0 0 chr13 95490834 95490879 -24254019 + AT_rich Low_complexity Low_complexity 1 45 0 214 0 26 77 chr13 95491089 95491128 -24253770 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1956 119 11 0 chr13 95491128 95491406 -24253492 - AluSq SINE Alu -32 281 1 30 45 0 0 chr13 95491572 95491616 -24253282 + AT_rich Low_complexity Low_complexity 1 44 0 181 354 0 0 chr13 95492160 95492208 -24252690 + L2 LINE L2 3167 3214 -58 632 229 119 48 chr13 95492316 95492526 -24252372 + MLT1E2 LTR MaLR 62 286 -340 24 0 0 0 chr13 95492728 95492752 -24252146 + AT_rich Low_complexity Low_complexity 1 24 0 191 70 0 70 chr13 95493156 95493199 -24251699 + (T)n Simple_repeat Simple_repeat 1 40 0 226 143 0 0 chr13 95493321 95493356 -24251542 + MADE1 DNA Mariner 1 35 -45 1629 266 85 11 chr13 95493441 95493960 -24250938 - MLT1H1 LTR MaLR 0 555 1 849 268 21 43 chr13 95493981 95494283 -24250615 - L2 LINE L2 -277 3036 2736 1056 132 0 6 chr13 95494289 95494463 -24250435 - L1PA13 LINE L1 0 6163 5991 4277 100 14 5 chr13 95494463 95495085 -24249813 + L1PA13 LINE L1 5347 5974 -194 737 266 37 33 chr13 95495086 95495330 -24249568 - L2 LINE L2 -568 2746 2502 27 62 0 0 chr13 95495471 95495519 -24249379 + AT_rich Low_complexity Low_complexity 1 48 0 2494 113 3 19 chr13 95496554 95496924 -24247974 - THE1B LTR MaLR 0 364 1 8972 125 40 57 chr13 95496924 95498529 -24246369 - THE1B-int LTR MaLR 0 1580 4 2309 141 14 6 chr13 95498531 95498892 -24246006 - THE1B LTR MaLR 0 364 1 274 340 25 20 chr13 95500205 95500408 -24244490 - L2 LINE L2 0 3313 3110 2262 164 53 28 chr13 95500430 95500864 -24244034 - MER65A LTR ERV1 0 445 1 1853 234 53 5 chr13 95500864 95501313 -24243585 - MER65A-int LTR ERV1 0 4871 4401 1740 265 66 0 chr13 95501316 95501742 -24243156 - MER65A-int LTR ERV1 -813 4058 3605 266 182 0 0 chr13 95501820 95501864 -24243034 - MER65A-int LTR ERV1 -2424 5696 5653 1116 243 40 10 chr13 95501910 95502211 -24242687 - MER65A-int LTR ERV1 -1535 3336 3027 5655 210 69 45 chr13 95502318 95503359 -24241539 - MER65A-int LTR ERV1 -2782 2089 931 243 0 0 0 chr13 95503359 95503386 -24241512 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5655 210 69 45 chr13 95503386 95504215 -24240683 - MER65A-int LTR ERV1 -3940 931 124 1730 191 69 6 chr13 95504370 95504731 -24240167 - MER65A LTR ERV1 -20 425 42 189 171 0 0 chr13 95504734 95504769 -24240129 + T-rich Low_complexity Low_complexity 1 35 0 1036 273 110 36 chr13 95504859 95505222 -24239676 - MLT1D LTR MaLR -1 504 115 821 204 6 22 chr13 95505231 95505412 -24239486 - AluSg/x SINE Alu -11 298 121 1864 132 4 0 chr13 95505512 95505785 -24239113 - AluY SINE Alu -31 280 7 248 188 0 0 chr13 95505788 95505836 -24239062 - MLT1D LTR MaLR -376 129 82 357 125 0 0 chr13 95506378 95506434 -24238464 + (TCC)n Simple_repeat Simple_repeat 3 58 0 27 0 0 0 chr13 95506448 95506475 -24238423 + AT_rich Low_complexity Low_complexity 1 27 0 330 115 0 0 chr13 95506708 95506760 -24238138 + (TG)n Simple_repeat Simple_repeat 1 52 0 295 104 42 0 chr13 95507985 95508033 -24236865 + MIR3 SINE MIR 147 196 -12 883 235 140 15 chr13 95508985 95509257 -24235641 + MLT1C LTR MaLR 162 467 0 685 294 141 21 chr13 95512279 95512605 -24232293 - L1ME3A LINE L1 -24 6146 5782 651 255 175 15 chr13 95512612 95512875 -24232023 - L1ME3A LINE L1 -428 5734 5430 22 56 0 0 chr13 95513045 95513081 -24231817 + AT_rich Low_complexity Low_complexity 1 36 0 648 193 15 104 chr13 95513431 95513633 -24231265 - FAM SINE Alu -1 48 1 306 254 0 0 chr13 95513859 95513922 -24230976 + MIR SINE MIR 96 158 -104 783 315 96 19 chr13 95513935 95514364 -24230534 - LTR16B LTR ERVL 0 464 3 180 77 0 0 chr13 95514575 95514601 -24230297 + (TC)n Simple_repeat Simple_repeat 2 27 0 30 69 0 0 chr13 95514601 95514659 -24230239 + AT_rich Low_complexity Low_complexity 1 58 0 268 345 55 9 chr13 95515857 95515967 -24228931 + L2 LINE L2 3158 3272 0 36 0 0 0 chr13 95516222 95516258 -24228640 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr13 95516338 95516385 -24228513 + AT_rich Low_complexity Low_complexity 1 47 0 22 70 0 0 chr13 95516517 95516560 -24228338 + AT_rich Low_complexity Low_complexity 1 43 0 252 81 61 50 chr13 95516628 95516727 -24228171 + (TA)n Simple_repeat Simple_repeat 2 101 0 180 0 0 0 chr13 95516734 95516754 -24228144 + (TC)n Simple_repeat Simple_repeat 2 21 0 227 30 0 30 chr13 95516755 95516788 -24228110 + (TA)n Simple_repeat Simple_repeat 1 32 0 310 175 39 39 chr13 95518751 95518854 -24226044 + Charlie7 DNA MER1_type 2444 2546 -66 23 68 0 0 chr13 95519701 95519745 -24225153 + AT_rich Low_complexity Low_complexity 1 44 0 893 302 162 66 chr13 95519988 95520510 -24224388 - L2 LINE L2 -4 3309 2838 2030 125 7 0 chr13 95520510 95520806 -24224092 + AluSx SINE Alu 1 298 -14 893 302 162 66 chr13 95520806 95521310 -24223588 - L2 LINE L2 -475 2838 2180 453 175 0 12 chr13 95521518 95521598 -24223300 + AluSg/x SINE Alu 204 282 -30 474 306 68 39 chr13 95521736 95522145 -24222753 - L1ME4a LINE L1 -143 5978 5558 2212 115 7 0 chr13 95522366 95522670 -24222228 + AluSg SINE Alu 1 306 -4 223 370 16 24 chr13 95525240 95525367 -24219531 + MIR SINE MIR 1 126 -136 1999 214 39 0 chr13 95525377 95525816 -24219082 + L1MB8 LINE L1 5469 5924 -254 1768 137 64 25 chr13 95525844 95526203 -24218695 - THE1C LTR MaLR 0 375 3 4058 137 18 15 chr13 95526205 95527229 -24217669 - THE1C-int LTR MaLR 0 1580 3 1924 146 52 17 chr13 95527232 95527594 -24217304 - THE1C LTR MaLR 0 375 1 262 337 180 33 chr13 95527796 95528528 -24216370 + L2 LINE L2 1799 2638 -676 182 264 19 0 chr13 95528542 95528595 -24216303 + L2 LINE L2 1768 1821 -1493 504 319 133 26 chr13 95529020 95529675 -24215223 + HAL1 LINE L1 497 1221 -1286 322 255 100 126 chr13 95529779 95530040 -24214858 + HAL1 LINE L1 1431 1697 -810 189 0 0 0 chr13 95530040 95530061 -24214837 + (TC)n Simple_repeat Simple_repeat 2 22 0 1957 150 3 0 chr13 95530061 95530368 -24214530 - AluSx SINE Alu -2 310 3 322 255 100 126 chr13 95530368 95530800 -24214098 + HAL1 LINE L1 1696 2174 -333 1302 188 7 91 chr13 95530800 95531109 -24213789 + AluJo SINE Alu 4 286 -16 322 255 100 126 chr13 95531109 95531434 -24213464 + HAL1 LINE L1 2174 2506 -1 198 324 183 14 chr13 95531447 95531589 -24213309 + L2 LINE L2 2766 2931 -383 189 0 0 0 chr13 95532248 95532269 -24212629 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 1713 143 0 68 chr13 95533571 95533879 -24211019 + AluJb SINE Alu 1 287 -25 21 57 0 0 chr13 95533879 95533914 -24210984 + AT_rich Low_complexity Low_complexity 1 35 0 2094 78 46 0 chr13 95533969 95534252 -24210646 - AluY SINE Alu -15 296 1 25 31 0 0 chr13 95534363 95534395 -24210503 + AT_rich Low_complexity Low_complexity 1 32 0 248 357 0 0 chr13 95534573 95534657 -24210241 - L2 LINE L2 0 3313 3230 277 274 24 12 chr13 95534761 95534845 -24210053 - L2 LINE L2 -1 3312 3228 2565 45 0 13 chr13 95535214 95535528 -24209370 + AluY SINE Alu 1 310 -1 478 269 156 46 chr13 95537107 95537434 -24207464 - LTR16A1 LTR ERVL -2 455 93 1150 118 0 49 chr13 95537504 95537707 -24207191 - AluSg/x SINE Alu 0 312 120 1232 136 35 26 chr13 95538118 95538346 -24206552 - L1MA9 LINE L1 0 6312 6083 431 314 25 0 chr13 95538609 95538730 -24206168 + MIR SINE MIR 48 171 -91 2463 59 0 3 chr13 95539732 95540037 -24204861 + AluY SINE Alu 1 304 -7 186 43 0 0 chr13 95540150 95540173 -24204725 + (TG)n Simple_repeat Simple_repeat 2 24 0 488 246 70 0 chr13 95541497 95541611 -24203287 - MER45A DNA AcHobo -7 171 50 324 265 26 175 chr13 95541861 95541991 -24202907 - L3 LINE CR1 -166 1411 1352 372 146 24 49 chr13 95541991 95542073 -24202825 + MER116 DNA Mariner 1 80 0 324 265 26 175 chr13 95542073 95542251 -24202647 - L3 LINE CR1 -225 1352 1149 316 103 52 0 chr13 95543439 95543497 -24201401 + L1MA5 LINE L1 6240 6300 0 183 387 160 20 chr13 95543946 95544303 -24200595 + L2 LINE L2 2325 2731 -583 183 333 0 0 chr13 95545216 95545261 -24199637 + L2 LINE L2 3140 3184 -88 368 367 71 47 chr13 95546428 95546707 -24198191 - L2 LINE L2 -571 2743 2472 1610 218 11 14 chr13 95546707 95547070 -24197828 + MLT1A1 LTR MaLR 4 365 0 368 367 71 47 chr13 95547070 95547392 -24197506 - L2 LINE L2 -842 2472 2127 565 291 108 14 chr13 95547682 95547905 -24196993 - MLT1J2 LTR MaLR -139 311 68 2451 171 14 2 chr13 95549547 95549968 -24194930 - MSTB LTR MaLR 0 426 1 4917 150 101 3 chr13 95551604 95552785 -24192113 - L1PA16 LINE L1 -172 5994 4666 1009 167 12 93 chr13 95553355 95553601 -24191297 - L1MA9 LINE L1 -31 6281 6056 2315 84 0 3 chr13 95555534 95555844 -24189054 - AluY SINE Alu -2 309 1 255 231 77 82 chr13 95555935 95556130 -24188768 - HAL1b LINE L1 -460 888 695 396 309 42 21 chr13 95556308 95556499 -24188399 - HAL1b LINE L1 -861 487 293 204 267 53 40 chr13 95559174 95559249 -24185649 + L2 LINE L2 3196 3271 -1 450 67 0 0 chr13 95559266 95559326 -24185572 + AluY SINE Alu 33 92 -219 1788 71 0 0 chr13 95559388 95559612 -24185286 + AluY SINE Alu 78 301 -10 29 28 0 0 chr13 95559612 95559648 -24185250 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr13 95559742 95559767 -24185131 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 339 265 176 0 chr13 95559770 95559872 -24185026 - L2 LINE L2 -16 3297 3178 22 0 0 0 chr13 95561122 95561144 -24183754 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr13 95561632 95561667 -24183231 + AT_rich Low_complexity Low_complexity 1 35 0 444 318 40 10 chr13 95562011 95562203 -24182695 + MIR SINE MIR 25 223 -39 707 247 115 10 chr13 95562260 95562469 -24182429 - MIR SINE MIR -18 244 16 238 217 261 33 chr13 95562606 95562698 -24182200 + L2 LINE L2 3201 3313 0 22 0 0 0 chr13 95562723 95562745 -24182153 + AT_rich Low_complexity Low_complexity 1 22 0 197 196 20 0 chr13 95562854 95562905 -24181993 + (TATG)n Simple_repeat Simple_repeat 3 54 0 337 289 70 61 chr13 95563685 95563697 -24181201 - MIR SINE MIR -12 250 240 204 40 0 0 chr13 95563697 95563722 -24181176 + (TC)n Simple_repeat Simple_repeat 2 26 0 195 100 0 0 chr13 95563721 95563751 -24181147 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 337 289 70 61 chr13 95563722 95563966 -24180932 - MIR SINE MIR -22 240 21 1040 281 60 52 chr13 95564621 95565626 -24179272 + L1ME3 LINE L1 3739 4751 -1395 13942 186 58 26 chr13 95565648 95569346 -24175552 + L1M2 LINE L1 13 3911 -2937 405 0 0 0 chr13 95569346 95569391 -24175507 + (CA)n Simple_repeat Simple_repeat 2 46 0 13942 186 58 26 chr13 95569391 95570655 -24174243 + L1M2 LINE L1 3911 5133 -1715 581 228 5 36 chr13 95570798 95570991 -24173907 + L1M2 LINE L1 5810 5996 -852 702 121 0 32 chr13 95570992 95571116 -24173782 + L1MA4A LINE L1 6178 6297 -6 254 235 92 0 chr13 95571116 95571214 -24173684 + L1ME3 LINE L1 4764 4870 -1276 * 418 254 196 50 chr13 95571213 95571610 -24173288 + L1ME3 LINE L1 5481 5935 -227 345 382 0 0 chr13 95571861 95572005 -24172893 - L2 LINE L2 -1341 1973 1830 558 237 45 26 chr13 95572791 95572947 -24171951 + MIR SINE MIR 3 161 -101 4851 67 1 15 chr13 95573666 95573785 -24171113 + L1PA5 LINE L1 5505 5624 -530 3438 126 206 50 chr13 95573785 95574500 -24170398 - LTR12 LTR ERV1 0 826 1 4851 67 1 15 chr13 95574500 95575037 -24169861 + L1PA5 LINE L1 5624 6152 -2 206 260 60 0 chr13 95575037 95575087 -24169811 + MIR SINE MIR 207 259 -3 22 0 0 0 chr13 95577089 95577111 -24167787 + AT_rich Low_complexity Low_complexity 1 22 0 340 301 96 62 chr13 95577355 95577647 -24167251 - L1M4 LINE L1 -1007 5139 4838 2341 98 0 0 chr13 95577675 95577980 -24166918 - AluSx SINE Alu -5 307 3 2008 139 0 19 chr13 95578083 95578487 -24166411 - AluSg SINE Alu 0 398 1 3148 195 117 45 chr13 95578589 95579803 -24165095 + L1MA7 LINE L1 4980 6281 -10 2477 96 30 72 chr13 95579951 95580379 -24164519 - L1P4 LINE L1 -423 5751 5342 3128 131 4 0 chr13 95580379 95580850 -24164048 + L1PA16 LINE L1 5682 6155 -11 25 75 0 0 chr13 95582298 95582351 -24162547 + AT_rich Low_complexity Low_complexity 1 53 0 315 0 0 0 chr13 95582608 95582643 -24162255 + (TG)n Simple_repeat Simple_repeat 2 36 0 262 232 18 0 chr13 95583015 95583071 -24161827 - MIR SINE MIR -2 260 204 207 330 34 45 chr13 95583108 95583196 -24161702 - MIR SINE MIR -154 108 22 4721 75 82 0 chr13 95583442 95584078 -24160820 - LTR12 LTR ERV1 0 688 1 348 303 29 91 chr13 95584094 95584302 -24160596 + MIR SINE MIR 3 197 -65 27 0 0 0 chr13 95585019 95585046 -24159852 + AT_rich Low_complexity Low_complexity 1 27 0 237 98 0 0 chr13 95585114 95585155 -24159743 + (CA)n Simple_repeat Simple_repeat 2 42 0 252 268 24 43 chr13 95585273 95585437 -24159461 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 1852 157 6 3 chr13 95587370 95587682 -24157216 - AluSq SINE Alu 0 313 1 188 143 24 0 chr13 95587742 95587784 -24157114 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 210 291 109 9 chr13 95587904 95588014 -24156884 - MIR SINE MIR -56 206 86 241 341 85 28 chr13 95588380 95588556 -24156342 + MER5A DNA MER1_type 1 186 -3 189 351 152 13 chr13 95591651 95591802 -24153096 - MIR SINE MIR -71 191 20 220 285 49 56 chr13 95593769 95593913 -24150985 - MIR SINE MIR -50 212 70 21 0 0 0 chr13 95594562 95594583 -24150315 + AT_rich Low_complexity Low_complexity 1 21 0 2429 90 0 0 chr13 95595270 95595581 -24149317 - AluY SINE Alu 0 311 1 2167 116 0 0 chr13 95595875 95596190 -24148708 - AluSq SINE Alu 0 315 1 1288 170 63 74 chr13 95596433 95596704 -24148194 + AluJb SINE Alu 1 268 -44 22 0 0 0 chr13 95597382 95597404 -24147494 + AT_rich Low_complexity Low_complexity 1 22 0 241 276 110 31 chr13 95597536 95597663 -24147235 + L2 LINE L2 3133 3269 -3 220 301 55 0 chr13 95598179 95598252 -24146646 + MIR SINE MIR 49 125 -137 182 319 43 0 chr13 95599404 95599451 -24145447 + L3b LINE CR1 1404 1452 -131 215 309 73 37 chr13 95599977 95600113 -24144785 - L2 LINE L2 -3 3269 3129 21 36 0 0 chr13 95600470 95600498 -24144400 + AT_rich Low_complexity Low_complexity 1 28 0 2278 101 0 3 chr13 95600502 95600808 -24144090 - AluSg SINE Alu -5 305 1 1322 278 95 7 chr13 95600829 95601427 -24143471 - L1ME3A LINE L1 -221 5949 5289 349 359 70 52 chr13 95601507 95601992 -24142906 - L1ME3A LINE L1 -917 5229 4736 2577 51 0 0 chr13 95602034 95602345 -24142553 + AluY SINE Alu 1 311 0 673 302 131 20 chr13 95602354 95603093 -24141805 - L1ME3A LINE L1 -1483 4663 3843 284 262 12 0 chr13 95603115 95603199 -24141699 - L1ME3A LINE L1 -2339 3807 3723 1072 176 20 20 chr13 95603891 95604095 -24140803 - THE1B LTR MaLR -160 204 1 378 325 73 24 chr13 95605836 95606042 -24138856 + MIR SINE MIR 37 252 -10 203 333 257 14 chr13 95606190 95606400 -24138498 - MIR SINE MIR -1 261 1 302 175 12 0 chr13 95606458 95606538 -24138360 + GA-rich Low_complexity Low_complexity 2 82 0 202 325 68 0 chr13 95606593 95606710 -24138188 + MIR SINE MIR 77 201 -61 1175 280 68 70 chr13 95606899 95607660 -24137238 + L1ME2 LINE L1 64 823 -5247 399 230 92 0 chr13 95607717 95607804 -24137094 - Tigger5 DNA MER2_type -2225 98 4 1944 239 119 60 chr13 95607805 95608253 -24136645 + L1ME2 LINE L1 4481 4901 -1197 1406 180 40 6 chr13 95608253 95608576 -24136322 + L1MA4 LINE L1 5961 6294 -6 1944 239 119 60 chr13 95608576 95609628 -24135270 + L1ME2 LINE L1 4901 6074 -24 453 90 0 0 chr13 95609688 95609755 -24135143 + (TAGG)n Simple_repeat Simple_repeat 1 67 0 3158 265 51 25 chr13 95609766 95610904 -24133994 + L1MC4 LINE L1 6687 7854 -188 347 48 0 129 chr13 95610952 95610978 -24133920 - MLT2A1 LTR ERVL 0 453 438 8214 65 6 4 chr13 95610978 95612047 -24132851 - MER11C LTR ERVK 0 1071 1 347 48 0 129 chr13 95612047 95612082 -24132816 - MLT2A1 LTR ERVL -15 438 400 453 57 72 42 chr13 95612083 95612420 -24132478 + (TA)n Simple_repeat Simple_repeat 1 347 0 26 50 0 0 chr13 95612422 95612462 -24132436 + AT_rich Low_complexity Low_complexity 1 40 0 2611 95 51 15 chr13 95612462 95612852 -24132046 - MLT2A1 LTR ERVL -40 404 1 5753 100 9 31 chr13 95613086 95613985 -24130913 - L1P LINE L1 -3270 2876 1998 * 11057 79 7 7 chr13 95613981 95615531 -24129367 + L1P LINE L1 2875 4423 -1723 23343 44 1 6 chr13 95615675 95618627 -24126271 - L1P LINE L1 -2704 3442 505 11668 27 1 1 chr13 95618627 95620783 -24124115 + L1PA4 LINE L1 4000 6155 0 2928 135 18 34 chr13 95620830 95621256 -24123642 - LOR1a LTR ERV1 0 497 78 1992 132 4 0 chr13 95621256 95621583 -24123315 + AluSx SINE Alu 1 328 0 2928 135 18 34 chr13 95621583 95621660 -24123238 - LOR1a LTR ERV1 -419 78 1 454 229 18 84 chr13 95622016 95622182 -24122716 + MER34 LTR ERV1 11 165 -377 813 175 0 7 chr13 95622329 95622472 -24122426 + FLAM_C SINE Alu 2 143 0 657 150 0 71 chr13 95622499 95622626 -24122272 + AluJb SINE Alu 131 248 -64 342 156 47 16 chr13 95622667 95622731 -24122167 + MER34 LTR ERV1 477 542 0 186 256 85 24 chr13 95622999 95623081 -24121817 - L2 LINE L2 -206 3107 3021 908 340 76 19 chr13 95623169 95623695 -24121203 - L2 LINE L2 -516 2798 2243 199 329 66 0 chr13 95624515 95624591 -24120307 - MIR SINE MIR -128 134 54 651 223 103 15 chr13 95625027 95625288 -24119610 - L1ME1 LINE L1 -1 6165 5887 1233 253 92 13 chr13 95625319 95625910 -24118988 - L1ME2 LINE L1 -1 6232 5564 2230 97 0 7 chr13 95625974 95626273 -24118625 - AluSx SINE Alu -15 297 1 211 320 39 13 chr13 95626485 95626563 -24118335 - L2 LINE L2 -3 3310 3231 282 278 195 21 chr13 95626896 95627179 -24117719 + L1ME LINE L1 5557 5798 -323 344 324 49 45 chr13 95627231 95627475 -24117423 - L2 LINE L2 -1185 2129 1885 2405 45 0 3 chr13 95627749 95628040 -24116858 + AluY SINE Alu 2 291 -20 319 233 144 27 chr13 95629279 95629425 -24115473 - L1ME2 LINE L1 -683 5548 5386 1039 277 81 20 chr13 95629486 95630290 -24114608 - L1ME2 LINE L1 -3322 2893 2083 6912 84 15 0 chr13 95630453 95632169 -24112729 + L1PA7 LINE L1 4424 6152 -2 39 50 0 0 chr13 95633055 95633115 -24111783 + AT_rich Low_complexity Low_complexity 1 60 0 211 224 15 0 chr13 95633321 95633388 -24111510 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 32 0 0 chr13 95633486 95633517 -24111381 + AT_rich Low_complexity Low_complexity 1 31 0 321 345 98 21 chr13 95635291 95635526 -24109372 - L1MC4a LINE L1 -1896 5912 5660 239 219 14 55 chr13 95635596 95635669 -24109229 - L1MC4a LINE L1 -594 5576 5507 37 39 0 0 chr13 95635791 95635842 -24109056 + AT_rich Low_complexity Low_complexity 1 51 0 338 277 34 95 chr13 95636489 95636637 -24108261 + L2 LINE L2 3133 3271 -1 27 0 0 0 chr13 95637012 95637039 -24107859 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr13 95637305 95637333 -24107565 + AT_rich Low_complexity Low_complexity 1 28 0 203 215 15 0 chr13 95637973 95638038 -24106860 + GA-rich Low_complexity Low_complexity 3 68 0 321 343 17 59 chr13 95638680 95638916 -24105982 - MIR SINE MIR 0 262 37 2417 114 17 14 chr13 95640367 95640726 -24104172 + THE1B LTR MaLR 1 360 -4 5820 44 0 3 chr13 95641947 95642694 -24102204 + L1P LINE L1 2718 3462 -2684 21 0 0 0 chr13 95693256 95693277 -24051621 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 95693777 95693799 -24051099 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr13 95693948 95693983 -24050915 + AT_rich Low_complexity Low_complexity 1 35 0 234 191 95 0 chr13 95695315 95695378 -24049520 + L1MEc LINE L1 1069 1137 -5259 2085 125 0 31 chr13 95696548 95696869 -24048029 + AluSx SINE Alu 1 311 -1 2300 99 0 0 chr13 95697684 95697977 -24046921 + AluSc SINE Alu 1 293 -16 288 0 0 0 chr13 95697978 95698010 -24046888 + (TA)n Simple_repeat Simple_repeat 1 32 0 1805 155 48 36 chr13 95698132 95698468 -24046430 - THE1B LTR MaLR -3 361 22 1364 84 11 5 chr13 95698467 95698657 -24046241 - MLT2A2 LTR ERVL -262 191 1 * 186 298 0 0 chr13 95698821 95698868 -24046030 + L2 LINE L2 113 159 -3155 543 266 41 121 chr13 95698871 95699284 -24045614 + L2 LINE L2 2923 3302 -11 241 65 0 0 chr13 95699285 95699316 -24045582 - L1 LINE L1 -1198 4948 4918 186 143 0 0 chr13 95700264 95700299 -24044599 + (CA)n Simple_repeat Simple_repeat 2 36 0 785 278 100 11 chr13 95700837 95701306 -24043592 - L1MEc LINE L1 -3596 2619 2156 848 285 47 34 chr13 95701347 95701579 -24043319 - L1MEc LINE L1 -4326 2070 1842 2659 26 0 0 chr13 95701579 95701881 -24043017 - AluY SINE Alu -9 302 1 848 285 47 34 chr13 95701881 95702115 -24042783 - L1MEc LINE L1 -4554 1842 1598 1398 321 86 18 chr13 95702214 95702773 -24042125 - L1MEc LINE L1 -5039 1357 837 288 0 0 0 chr13 95702773 95702805 -24042093 + (TG)n Simple_repeat Simple_repeat 2 33 0 1398 321 86 18 chr13 95702805 95703407 -24041491 - L1MEc LINE L1 -5559 837 117 613 342 24 45 chr13 95703588 95703921 -24040977 + L2 LINE L2 2988 3313 0 641 234 69 6 chr13 95704003 95704178 -24040720 + MLT1B LTR MaLR 1 186 -204 862 226 34 0 chr13 95704259 95704436 -24040462 + MLT1B LTR MaLR 208 390 0 21 36 0 0 chr13 95706272 95706300 -24038598 + AT_rich Low_complexity Low_complexity 1 28 0 2350 168 219 81 chr13 95706314 95707211 -24037687 - LTR28 LTR ERV1 0 1020 1 29 84 0 0 chr13 95707273 95707344 -24037554 + AT_rich Low_complexity Low_complexity 1 71 0 236 295 74 21 chr13 95707613 95707708 -24037190 + L2 LINE L2 3192 3291 -22 728 244 37 28 chr13 95708581 95708798 -24036100 + MER20 DNA MER1_type 1 219 0 210 383 83 21 chr13 95709754 95709947 -24034951 - MIR SINE MIR -3 259 55 755 144 8 0 chr13 95710235 95710367 -24034531 - AluSg/x SINE Alu 0 312 180 1026 302 36 58 chr13 95710369 95710786 -24034112 - L1MDa LINE L1 -5714 826 419 966 244 53 4 chr13 95710790 95711052 -24033846 - L1MDa LINE L1 -6175 365 91 234 332 12 0 chr13 95711238 95711488 -24033410 + (CA)n Simple_repeat Simple_repeat 1 253 0 240 200 0 0 chr13 95711501 95711556 -24033342 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 33 0 0 chr13 95711797 95711827 -24033071 + AT_rich Low_complexity Low_complexity 1 30 0 1800 251 24 34 chr13 95713379 95713881 -24031017 - MLT1D LTR MaLR -3 502 6 2262 191 34 41 chr13 95713889 95714615 -24030283 - L1M1 LINE L1 -596 5572 4879 2585 166 51 25 chr13 95714615 95715162 -24029736 + L1MB1 LINE L1 5606 6167 -1 2119 121 0 3 chr13 95715522 95715820 -24029078 - AluSx SINE Alu -15 297 1 257 339 73 9 chr13 95715973 95716082 -24028816 + L2 LINE L2 3156 3271 -1 40 37 0 0 chr13 95716085 95716139 -24028759 + AT_rich Low_complexity Low_complexity 1 54 0 21 82 0 0 chr13 95716371 95716420 -24028478 + AT_rich Low_complexity Low_complexity 1 49 0 270 0 0 0 chr13 95717185 95717215 -24027683 + (CA)n Simple_repeat Simple_repeat 2 31 0 415 338 73 18 chr13 95717399 95717618 -24027280 - MIR SINE MIR -6 256 26 201 74 0 0 chr13 95719958 95719985 -24024913 + (T)n Simple_repeat Simple_repeat 1 27 0 1126 171 14 14 chr13 95720816 95721026 -24023872 - MER6B DNA MER2_type 0 210 1 244 318 31 62 chr13 95721026 95721155 -24023743 - MIR SINE MIR -18 244 120 23 0 0 0 chr13 95721797 95721820 -24023078 + AT_rich Low_complexity Low_complexity 1 23 0 756 288 122 18 chr13 95722973 95723310 -24021588 + LTR33A LTR ERVL 149 520 -3 593 306 80 43 chr13 95724017 95724200 -24020698 + L2 LINE L2 1748 1923 -1391 1391 197 81 16 chr13 95724200 95724520 -24020378 + MER61A LTR ERV1 1 341 -2 593 306 80 43 chr13 95724520 95724849 -24020049 + L2 LINE L2 1923 2279 -1035 1692 80 0 17 chr13 95724877 95725114 -24019784 - L1PB1 LINE L1 -471 5680 5448 606 74 0 0 chr13 95725115 95725196 -24019702 + L1PB1 LINE L1 5709 5789 -362 496 75 102 8 chr13 95725196 95725582 -24019316 + (TA)n Simple_repeat Simple_repeat 1 422 0 2515 83 5 24 chr13 95725588 95725963 -24018935 + L1PB1 LINE L1 5782 6149 -2 180 77 0 0 chr13 95725967 95725993 -24018905 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 181 336 8 34 chr13 95725994 95726113 -24018785 + L2 LINE L2 2349 2464 -850 256 314 83 81 chr13 95726343 95726556 -24018342 + L2 LINE L2 2851 3067 -205 351 0 0 0 chr13 95726556 95726595 -24018303 + (TG)n Simple_repeat Simple_repeat 1 39 0 256 314 83 81 chr13 95726595 95726802 -24018096 + L2 LINE L2 3067 3272 0 196 350 17 0 chr13 95726802 95726862 -24018036 - L3b LINE CR1 -12 1571 1511 191 250 0 0 chr13 95727426 95727462 -24017436 + MIR SINE MIR 117 152 -56 340 269 38 14 chr13 95727463 95727671 -24017227 + L1ME3 LINE L1 5713 5931 -239 2216 107 0 16 chr13 95727733 95728042 -24016856 + AluSq SINE Alu 1 304 -9 1294 45 0 0 chr13 95728595 95728752 -24016146 + AluY SINE Alu 143 299 -12 1193 332 44 60 chr13 95730173 95731200 -24013698 + L2 LINE L2 2306 3311 -2 1255 238 25 191 chr13 95731353 95731868 -24013030 - L2 LINE L2 -514 2800 2201 423 38 0 0 chr13 95731868 95731921 -24012977 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 1255 238 25 191 chr13 95731921 95732193 -24012705 - L2 LINE L2 -1113 2201 2354 396 0 0 0 chr13 95732193 95732237 -24012661 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 1255 238 25 191 chr13 95732237 95732879 -24012019 - L2 LINE L2 -959 2355 1608 730 244 4 74 chr13 95732883 95733089 -24011809 + L1M4b LINE L1 -302 4294967184 -6658 1629 211 20 28 chr13 95733089 95733482 -24011416 - MLT1B LTR MaLR 0 390 1 730 244 4 74 chr13 95733482 95733505 -24011393 + L1M4b LINE L1 -112 4294967207 -6635 533 270 15 0 chr13 95733501 95733638 -24011260 + L1M4b LINE L1 409 547 -5999 * 4135 183 29 23 chr13 95733641 95734373 -24010525 + MER6 DNA MER2_type 8 747 -118 2104 121 0 3 chr13 95734373 95734671 -24010227 - AluSq SINE Alu -16 297 1 4135 183 29 23 chr13 95734671 95734791 -24010107 + MER6 DNA MER2_type 747 865 0 2152 276 41 11 chr13 95735139 95735780 -24009118 - MER76 LTR ERV -28 660 1 1626 229 39 45 chr13 95736027 95736743 -24008155 + L1M4b LINE L1 877 1594 -4948 1247 324 91 13 chr13 95736769 95737395 -24007503 - L2 LINE L2 -2062 1252 578 210 244 0 0 chr13 95739038 95739083 -24005815 + (CACCAT)n Simple_repeat Simple_repeat 4 48 0 1215 108 10 39 chr13 95739448 95739652 -24005246 + AluY SINE Alu 101 298 -13 23 33 0 0 chr13 95740941 95740971 -24003927 + AT_rich Low_complexity Low_complexity 1 30 0 1895 95 0 75 chr13 95741229 95741524 -24003374 + AluSg SINE Alu 22 294 -16 215 223 9 54 chr13 95741731 95741843 -24003055 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 246 333 0 0 chr13 95742872 95742944 -24001954 + L2 LINE L2 3242 3313 0 270 340 64 0 chr13 95744352 95744508 -24000390 - MER103 DNA DNA 0 166 1 2442 85 0 0 chr13 95744711 95745017 -23999881 - AluSc SINE Alu -1 308 3 340 164 30 0 chr13 95745018 95745085 -23999813 - MER5A DNA MER1_type -112 77 9 704 120 0 0 chr13 95745774 95745874 -23999024 - LTR12 LTR ERV1 0 714 615 312 233 11 0 chr13 95745876 95745966 -23998932 - LTR30 LTR ERV1 -79 643 553 1386 109 157 4 chr13 95745966 95746218 -23998680 - LTR12 LTR ERV1 -401 2037 57 265 231 0 0 chr13 95746218 95746270 -23998628 - LTR30 LTR ERV1 -670 52 1 23 33 0 0 chr13 95747120 95747150 -23997748 + AT_rich Low_complexity Low_complexity 1 30 0 2177 78 3 7 chr13 95747268 95747594 -23997304 + AluSq SINE Alu 1 325 0 324 0 0 0 chr13 95747669 95747705 -23997193 + (TG)n Simple_repeat Simple_repeat 2 37 0 413 317 45 50 chr13 95747919 95748140 -23996758 - MIR SINE MIR 0 262 43 1154 209 67 26 chr13 95749565 95750016 -23994882 - MLT1D LTR MaLR -7 498 1 766 237 103 54 chr13 95750502 95750806 -23994092 + MLT1H1 LTR MaLR 1 378 -164 189 26 79 0 chr13 95750806 95750844 -23994054 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 766 237 103 54 chr13 95750844 95751017 -23993881 + MLT1H1 LTR MaLR 378 541 -1 21 0 0 0 chr13 95751692 95751713 -23993185 + AT_rich Low_complexity Low_complexity 1 21 0 665 203 23 0 chr13 95751713 95751846 -23993052 - AluJo SINE Alu -176 136 1 919 171 19 47 chr13 95751862 95752073 -23992825 - L1MC1 LINE L1 -6 6327 6123 207 69 0 0 chr13 95752076 95752105 -23992793 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1700 130 0 4 chr13 95752109 95752363 -23992535 - AluSq SINE Alu -60 253 1 341 266 126 27 chr13 95752936 95753229 -23991669 - L1ME4a LINE L1 -94 6027 5706 34 42 0 0 chr13 95753476 95753524 -23991374 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr13 95755790 95755819 -23989079 + AT_rich Low_complexity Low_complexity 1 29 0 323 227 209 9 chr13 95756366 95756476 -23988422 - L2 LINE L2 -7 3306 3175 23 0 0 0 chr13 95757130 95757153 -23987745 + AT_rich Low_complexity Low_complexity 1 23 0 521 250 33 0 chr13 95757796 95757916 -23986982 - MER5B DNA MER1_type -1 177 54 2355 73 0 3 chr13 95757995 95758298 -23986600 + AluSg SINE Alu 1 302 -8 21 82 0 0 chr13 95759306 95759355 -23985543 + AT_rich Low_complexity Low_complexity 1 49 0 244 293 50 40 chr13 95759733 95759832 -23985066 + L2 LINE L2 3169 3268 -4 416 191 56 0 chr13 95759983 95760072 -23984826 - MSTC LTR MaLR -334 94 1 200 211 0 0 chr13 95761248 95761286 -23983612 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 259 244 57 24 chr13 95761377 95761500 -23983398 + L1ME4a LINE L1 5978 6104 -17 444 272 215 36 chr13 95761803 95762328 -23982570 - L1M4 LINE L1 -1755 4391 3773 191 88 29 0 chr13 95762390 95762424 -23982474 + (TATAA)n Simple_repeat Simple_repeat 4 38 0 1309 236 56 13 chr13 95762424 95762801 -23982097 - L1M4 LINE L1 -1019 5127 4735 329 178 14 0 chr13 95762839 95762912 -23981986 - MLT1D LTR MaLR 0 505 432 396 59 0 0 chr13 95762916 95762967 -23981931 + (TG)n Simple_repeat Simple_repeat 2 52 0 249 264 38 94 chr13 95763170 95763329 -23981569 + L2 LINE L2 2174 2323 -991 1383 223 121 38 chr13 95763391 95763813 -23981085 + MLT1E2 LTR MaLR 1 457 -169 189 374 23 23 chr13 95763911 95764042 -23980856 + L2 LINE L2 2952 3082 -231 2122 104 3 3 chr13 95764475 95764762 -23980136 + AluSc SINE Alu 1 287 -22 22 0 0 0 chr13 95765224 95765246 -23979652 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 95765338 95765368 -23979530 + AT_rich Low_complexity Low_complexity 1 30 0 231 181 64 12 chr13 95765382 95765553 -23979345 + (TA)n Simple_repeat Simple_repeat 1 180 0 276 234 13 39 chr13 95765584 95765738 -23979160 + (TAAA)n Simple_repeat Simple_repeat 4 153 0 26 0 0 0 chr13 95765772 95765798 -23979100 + AT_rich Low_complexity Low_complexity 1 26 0 2098 116 3 0 chr13 95765798 95766083 -23978815 - AluSg SINE Alu -24 286 1 1713 179 13 3 chr13 95766089 95766390 -23978508 - AluSx SINE Alu -8 304 1 1617 107 16 12 chr13 95767291 95767535 -23977363 + THE1C LTR MaLR 4 248 -127 21 36 0 0 chr13 95769107 95769135 -23975763 + AT_rich Low_complexity Low_complexity 1 28 0 2167 38 55 41 chr13 95769598 95769889 -23975009 - AluY SINE Alu -15 296 2 4706 123 30 18 chr13 95770067 95770837 -23974061 + MER4E LTR ERV1 1 779 0 276 179 26 17 chr13 95771443 95771560 -23973338 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 411 301 105 0 chr13 95771916 95772049 -23972849 + MIR SINE MIR 116 262 0 2234 104 7 7 chr13 95772560 95772869 -23972029 - AluSq SINE Alu -4 309 1 644 362 101 13 chr13 95773365 95773986 -23970912 + L2 LINE L2 1711 2386 -928 1929 144 23 0 chr13 95774622 95774921 -23969977 - AluSq SINE Alu -7 306 1 180 184 41 41 chr13 95776254 95776303 -23968595 - L2 LINE L2 -1318 1996 1948 526 42 0 28 chr13 95777030 95777102 -23967796 + L1PA5 LINE L1 6079 6148 -6 1316 70 0 0 chr13 95777169 95777340 -23967558 - L1PA10 LINE L1 -481 5687 5517 3238 94 7 2 chr13 95777340 95777798 -23967100 + L1PA10 LINE L1 5691 6150 -18 504 272 94 20 chr13 95778052 95778254 -23966644 + MIR SINE MIR 16 232 -30 1519 231 45 17 chr13 95778351 95778706 -23966192 - MLT1A1 LTR MaLR 0 365 1 3269 128 30 8 chr13 95779002 95779510 -23965388 - MER1A DNA MER1_type -10 519 1 2295 112 0 0 chr13 95780173 95780478 -23964420 - AluSx SINE Alu -7 305 1 214 342 120 38 chr13 95780783 95780941 -23963957 + L2 LINE L2 3130 3300 -13 778 119 0 30 chr13 95781456 95781590 -23963308 - FLAM_C SINE Alu -3 130 1 253 296 129 15 chr13 95781603 95781735 -23963163 + L2 LINE L2 1740 1886 -1428 847 269 38 108 chr13 95781805 95782203 -23962695 - LTR16A LTR ERVL -13 437 68 2186 98 0 0 chr13 95782672 95782968 -23961930 + AluY SINE Alu 1 296 -15 23 0 0 0 chr13 95783218 95783241 -23961657 + AT_rich Low_complexity Low_complexity 1 23 0 282 324 19 28 chr13 95783483 95783591 -23961307 - L2 LINE L2 0 3313 3207 1558 207 34 11 chr13 95783796 95784153 -23960745 + MLT1A1 LTR MaLR 1 365 0 914 219 20 52 chr13 95784415 95784666 -23960232 + MLT1A2 LTR MaLR 132 374 0 230 221 0 0 chr13 95784689 95784741 -23960157 + Alu SINE Alu 80 121 -12 223 162 0 0 chr13 95784898 95784935 -23959963 + (CATA)n Simple_repeat Simple_repeat 2 38 0 36 0 0 0 chr13 95784976 95785012 -23959886 + AT_rich Low_complexity Low_complexity 1 36 0 978 228 99 31 chr13 95786251 95786633 -23958265 - LTR37A LTR ERV1 0 426 19 197 143 0 41 chr13 95786912 95786961 -23957937 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2294 87 0 16 chr13 95787754 95788065 -23956833 + AluY SINE Alu 1 306 -5 22 0 0 0 chr13 95788858 95788880 -23956018 + AT_rich Low_complexity Low_complexity 1 22 0 1095 136 0 0 chr13 95788880 95789042 -23955856 - AluSg/x SINE Alu -25 287 126 2238 105 0 0 chr13 95789042 95789348 -23955550 - AluSg SINE Alu 0 310 5 354 258 116 43 chr13 95789407 95789584 -23955314 - MIR SINE MIR -59 203 18 270 336 8 41 chr13 95789812 95789934 -23954964 + L2 LINE L2 2256 2373 -941 648 247 53 87 chr13 95789999 95790299 -23954599 + MLT1A1 LTR MaLR 1 290 -75 2326 243 35 93 chr13 95790329 95791255 -23953643 + MLT1A1-int LTR MaLR 1 872 -499 433 248 43 75 chr13 95791358 95791519 -23953379 + MLT1A1-int LTR MaLR 937 1092 -279 2115 136 12 3 chr13 95791530 95791875 -23953023 - L1PA13 LINE L1 -7 6156 5809 559 222 31 88 chr13 95792090 95792284 -23952614 + MLT1D LTR MaLR 4 186 -440 * 594 265 40 20 chr13 95792266 95792466 -23952432 + MLT1D LTR MaLR 301 504 -1 776 245 168 46 chr13 95793240 95793614 -23951284 + MLT1E1 LTR MaLR 17 372 -252 2095 120 0 0 chr13 95793644 95793928 -23950970 + AluSg1 SINE Alu 3 286 -23 1361 180 26 22 chr13 95796414 95796681 -23948217 - AluJb SINE Alu -44 268 1 2137 269 84 31 chr13 95797192 95797965 -23946933 - L1M4 LINE L1 -5702 840 27 24 53 0 0 chr13 95799213 95799251 -23945647 + AT_rich Low_complexity Low_complexity 1 38 0 549 241 93 19 chr13 95799427 95799643 -23945255 - L1ME3 LINE L1 -198 5964 5733 259 286 12 0 chr13 95799646 95799730 -23945168 - L1ME3 LINE L1 -536 5634 5550 22 0 0 0 chr13 95799906 95799928 -23944970 + AT_rich Low_complexity Low_complexity 1 22 0 297 338 58 24 chr13 95801808 95802015 -23942883 - MIR SINE MIR -20 242 29 1761 186 0 0 chr13 95802581 95802877 -23942021 - AluJb SINE Alu -7 305 10 291 318 149 21 chr13 95804559 95804801 -23940097 - MLT1J LTR MaLR 0 511 239 184 360 87 58 chr13 95805702 95806152 -23938746 - L2 LINE L2 -1034 2280 1818 222 273 18 0 chr13 95806234 95806289 -23938609 + (TG)n Simple_repeat Simple_repeat 1 56 0 3367 256 112 28 chr13 95808639 95808746 -23936152 - L1ME2 LINE L1 -16 6148 6051 1859 146 7 0 chr13 95808746 95809027 -23935871 + AluSc SINE Alu 1 283 -26 3367 256 112 28 chr13 95809027 95809302 -23935596 - L1ME2 LINE L1 -113 6051 5801 1838 144 40 60 chr13 95809302 95809488 -23935410 + MLT1B LTR MaLR 2 190 -200 1460 206 11 0 chr13 95809488 95809801 -23935097 + AluJo SINE Alu 1 316 0 1838 144 40 60 chr13 95809801 95810010 -23934888 + MLT1B LTR MaLR 190 390 0 3367 256 112 28 chr13 95810010 95811599 -23933299 - L1ME2 LINE L1 -363 5801 3957 183 42 0 0 chr13 95811599 95811623 -23933275 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3367 256 112 28 chr13 95811623 95811922 -23932976 - L1ME2 LINE L1 -2207 3957 3685 22 0 0 0 chr13 95812363 95812385 -23932513 + AT_rich Low_complexity Low_complexity 1 22 0 2558 96 11 14 chr13 95812517 95812882 -23932016 - THE1B LTR MaLR 0 364 1 2084 50 0 73 chr13 95812910 95813211 -23931687 - AluY SINE Alu -4 307 29 1504 167 67 7 chr13 95813800 95814070 -23930828 - AluJo SINE Alu -26 286 1 243 0 0 0 chr13 95816260 95816287 -23928611 + (T)n Simple_repeat Simple_repeat 1 27 0 1098 162 5 20 chr13 95816641 95816838 -23928060 + AluSq SINE Alu 1 194 -119 225 0 0 0 chr13 95817768 95817793 -23927105 + (A)n Simple_repeat Simple_repeat 1 25 0 767 261 128 83 chr13 95818430 95818898 -23926000 + MLT1F1 LTR MaLR 71 559 -8 213 175 0 0 chr13 95819080 95819120 -23925778 + GA-rich Low_complexity Low_complexity 1 40 0 256 295 26 26 chr13 95819191 95819269 -23925629 - L2 LINE L2 -3 3269 3192 2287 110 3 0 chr13 95819432 95819772 -23925126 - AluSg SINE Alu 0 341 1 730 225 182 0 chr13 95820035 95820222 -23924676 + MER58A DNA MER1_type 4 224 0 279 157 0 0 chr13 95820337 95820388 -23924510 + (TG)n Simple_repeat Simple_repeat 1 51 0 450 154 0 0 chr13 95820784 95820862 -23924036 + (TA)n Simple_repeat Simple_repeat 2 79 0 2147 131 0 3 chr13 95822202 95822508 -23922390 + AluSc SINE Alu 1 305 -4 383 316 147 8 chr13 95823381 95823850 -23921048 + L1ME3 LINE L1 1246 1779 -4617 294 290 52 52 chr13 95823901 95824170 -23920728 + L1ME3 LINE L1 3518 3786 -2429 1834 278 59 42 chr13 95824486 95825368 -23919530 + L1ME3 LINE L1 5328 6224 -7 401 245 108 28 chr13 95825410 95825622 -23919276 + L1ME3 LINE L1 5609 5837 -325 235 271 85 17 chr13 95825638 95825756 -23919142 + L1ME3 LINE L1 5910 6035 -127 1770 208 35 62 chr13 95825848 95826328 -23918570 - MLT1C LTR MaLR 0 467 1 183 318 80 80 chr13 95826464 95826615 -23918283 - MIR3 SINE MIR -6 202 52 683 215 21 0 chr13 95831138 95831309 -23913589 - AluJb SINE Alu 0 309 136 1242 151 5 5 chr13 95831413 95831618 -23913280 + L1MC1 LINE L1 6123 6327 -6 2115 119 0 6 chr13 95831758 95832090 -23912808 + AluSc SINE Alu 1 330 0 2299 97 0 0 chr13 95832905 95833205 -23911693 + AluY SINE Alu 1 300 -11 1108 233 91 104 chr13 95835122 95835571 -23909327 - MLT1E2 LTR MaLR 0 626 186 1124 55 0 42 chr13 95835571 95835736 -23909162 + L1PA6 LINE L1 5997 6154 0 1108 233 91 104 chr13 95835736 95835912 -23908986 - MLT1E2 LTR MaLR -440 186 9 451 276 92 72 chr13 95836525 95836775 -23908123 - MIR SINE MIR -1 261 7 2832 118 9 7 chr13 95840033 95840475 -23904423 - L1PB1 LINE L1 0 6151 5709 201 167 0 0 chr13 95841656 95841692 -23903206 + (TA)n Simple_repeat Simple_repeat 1 36 0 343 233 9 43 chr13 95842273 95842389 -23902509 - L1MEd LINE L1 -5989 130 19 30 27 0 0 chr13 95843830 95843867 -23901031 + AT_rich Low_complexity Low_complexity 1 37 0 2088 120 0 0 chr13 95844483 95844766 -23900132 + AluSq SINE Alu 15 297 -16 21 0 0 0 chr13 95845839 95845860 -23899038 + AT_rich Low_complexity Low_complexity 1 21 0 4300 202 87 50 chr13 95846677 95847817 -23897081 + L1MC1 LINE L1 22 1203 -5223 3292 208 68 22 chr13 95847789 95849120 -23895778 + L1MC1 LINE L1 1471 2781 -3645 * 2908 177 43 3 chr13 95849104 95849680 -23895218 + L1MC1 LINE L1 5605 6203 -410 * 283 230 108 14 chr13 95849681 95849755 -23895143 - Tigger5 DNA MER2_type -1 2322 2242 * 405 253 0 0 chr13 95849745 95849824 -23895074 + Tigger5 DNA MER2_type 2242 2320 -3 382 279 0 0 chr13 95849824 95849902 -23894996 - Tigger5 DNA MER2_type -2245 78 1 1919 181 26 8 chr13 95849902 95850288 -23894610 + L1MC1 LINE L1 6202 6594 -19 25 75 0 0 chr13 95850837 95850890 -23894008 + AT_rich Low_complexity Low_complexity 1 53 0 2283 101 0 0 chr13 95850917 95851215 -23893683 + AluSg SINE Alu 2 299 -11 198 349 36 0 chr13 95851998 95852081 -23892817 + L2 LINE L2 3186 3271 -1 393 232 35 70 chr13 95852132 95852274 -23892624 - MIR SINE MIR -47 215 79 185 250 68 0 chr13 95853870 95853914 -23890984 - L2 LINE L2 0 3313 3267 21 0 0 0 chr13 95854301 95854322 -23890576 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 95854412 95854443 -23890455 + AT_rich Low_complexity Low_complexity 1 31 0 222 273 18 0 chr13 95855311 95855366 -23889532 + (TG)n Simple_repeat Simple_repeat 1 56 0 341 395 0 0 chr13 95857338 95857490 -23887408 + C-rich Low_complexity Low_complexity 1 152 0 1967 124 0 10 chr13 95857932 95858223 -23886675 - AluSp SINE Alu -25 288 1 182 271 17 51 chr13 95858399 95858458 -23886440 + MIR SINE MIR 196 252 -10 855 232 5 42 chr13 95859141 95859331 -23885567 - MER5A DNA MER1_type 0 189 7 28 0 0 0 chr13 95860531 95860559 -23884339 + AT_rich Low_complexity Low_complexity 1 28 0 209 83 28 0 chr13 95861486 95861522 -23883376 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 89 0 0 chr13 95861568 95861624 -23883274 + AT_rich Low_complexity Low_complexity 1 56 0 1932 127 22 0 chr13 95861767 95862066 -23882832 + AluY SINE Alu 3 307 0 334 234 32 11 chr13 95863411 95863505 -23881393 + L1ME4a LINE L1 5945 6040 -81 207 0 0 0 chr13 95864025 95864048 -23880850 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2109 60 0 11 chr13 95865621 95865888 -23879010 + AluY SINE Alu 40 303 -8 287 360 0 10 chr13 95867342 95867442 -23877456 + L2 LINE L2 2082 2180 -1134 226 310 93 62 chr13 95869449 95869578 -23875320 - MER5A DNA MER1_type -53 136 4 211 269 176 25 chr13 95870506 95870625 -23874273 + MIR SINE MIR 88 224 -38 1674 70 0 9 chr13 95870736 95870949 -23873949 + AluY SINE Alu 90 300 -11 683 283 50 67 chr13 95871395 95871522 -23873376 - L1ME3A LINE L1 -222 5948 5820 2044 122 26 29 chr13 95871522 95871833 -23873065 - AluSx SINE Alu -2 310 1 683 283 50 67 chr13 95871833 95872168 -23872730 - L1ME3A LINE L1 -350 5820 5494 2051 191 65 8 chr13 95872338 95872740 -23872158 - MSTB LTR MaLR -1 425 1 832 248 46 67 chr13 95872835 95873226 -23871672 - L1MC5 LINE L1 -896 7065 6683 325 320 65 43 chr13 95873525 95873990 -23870908 - HAL1b LINE L1 -749 599 125 256 98 0 24 chr13 95874970 95875011 -23869887 + MADE1 DNA Mariner 41 80 0 29 60 0 0 chr13 95875233 95875283 -23869615 + AT_rich Low_complexity Low_complexity 1 50 0 1614 203 86 51 chr13 95875608 95876097 -23868801 - MER67D LTR ERV1 -6 508 3 288 339 144 24 chr13 95876843 95877141 -23867757 + L2 LINE L2 2336 2669 -645 2501 65 0 0 chr13 95877939 95878246 -23866652 - AluY SINE Alu -2 309 3 1809 140 3 31 chr13 95878254 95878540 -23866358 - AluSx SINE Alu -18 294 17 245 146 254 0 chr13 95878598 95878653 -23866245 + LTR33A LTR ERVL 443 511 -12 287 374 18 12 chr13 95879510 95879676 -23865222 + MER5A DNA MER1_type 23 189 0 23 33 0 0 chr13 95880251 95880281 -23864617 + AT_rich Low_complexity Low_complexity 1 30 0 363 60 0 0 chr13 95880293 95880343 -23864555 + (TA)n Simple_repeat Simple_repeat 2 51 0 180 152 0 0 chr13 95880619 95880652 -23864246 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 185 236 18 18 chr13 95880652 95880707 -23864191 - L2 LINE L2 0 3313 3259 189 333 56 22 chr13 95880796 95880886 -23864012 - L2 LINE L2 -181 3091 2999 201 305 203 17 chr13 95881023 95881141 -23863757 - L2 LINE L2 -581 2733 2594 26 50 0 0 chr13 95881246 95881286 -23863612 + AT_rich Low_complexity Low_complexity 1 40 0 2026 144 3 0 chr13 95881526 95881825 -23863073 + AluSx SINE Alu 1 300 -12 1633 130 109 24 chr13 95882142 95882480 -23862418 - THE1C LTR MaLR 0 375 9 7208 136 38 7 chr13 95882583 95883685 -23861213 - THE1C-int LTR MaLR -53 1527 392 1910 159 43 32 chr13 95883735 95884105 -23860793 - THE1C LTR MaLR 0 375 2 302 282 155 40 chr13 95884168 95884342 -23860556 - MIR SINE MIR -36 226 33 245 333 29 40 chr13 95884883 95885057 -23859841 - MER90 LTR ERV1 -8 606 435 324 0 0 0 chr13 95885299 95885335 -23859563 + (TC)n Simple_repeat Simple_repeat 1 36 0 * 399 41 0 0 chr13 95885334 95885383 -23859515 + (CA)n Simple_repeat Simple_repeat 1 49 0 2584 129 20 0 chr13 95886534 95887126 -23857772 + L1PA8A LINE L1 4960 5558 -573 376 258 0 0 chr13 95887558 95887647 -23857251 - MLT1K LTR MaLR 0 588 500 249 338 12 0 chr13 95887874 95887954 -23856944 - MLT1K LTR MaLR -357 231 151 423 100 0 0 chr13 95888111 95888181 -23856717 + (CA)n Simple_repeat Simple_repeat 2 71 0 1397 252 110 19 chr13 95888521 95889040 -23855858 + HsTC2c DNA Tc2 164 729 0 231 323 112 25 chr13 95889112 95889273 -23855625 + MIR3 SINE MIR 34 208 0 25 31 0 0 chr13 95890259 95890291 -23854607 + AT_rich Low_complexity Low_complexity 1 32 0 4365 6 0 0 chr13 95890317 95890805 -23854093 + L1HS LINE L1 5662 6149 -6 31 0 0 0 chr13 95890805 95890836 -23854062 + AT_rich Low_complexity Low_complexity 1 31 0 422 315 35 48 chr13 95890942 95891405 -23853493 + L1MEc LINE L1 1354 1810 -4586 808 247 61 167 chr13 95891716 95892012 -23852886 - MER77 LTR ERV1 -1 604 278 2253 75 0 0 chr13 95892012 95892338 -23852560 - AluY SINE Alu 0 326 1 261 57 0 0 chr13 95892342 95892377 -23852521 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 808 247 61 167 chr13 95892377 95892724 -23852174 - MER77 LTR ERV1 -330 275 54 1987 110 20 7 chr13 95892925 95893224 -23851674 + AluSx SINE Alu 1 303 -9 270 81 0 0 chr13 95893398 95893435 -23851463 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2350 39 4 4 chr13 95893445 95893725 -23851173 - AluY SINE Alu -3 308 29 6035 244 63 30 chr13 95894087 95895809 -23849089 - MER77-int LTR ERV1 -58 4133 2356 410 238 234 39 chr13 95895811 95896298 -23848600 + L1MEc LINE L1 2305 2886 -3329 3504 76 11 0 chr13 95897044 95897492 -23847406 - MLT2A2 LTR ERVL 0 453 1 698 216 126 0 chr13 95898852 95899019 -23845879 + MER5A DNA MER1_type 2 189 0 610 157 0 26 chr13 95899222 95899337 -23845561 + MLT1A1 LTR MaLR 8 119 -246 183 243 149 65 chr13 95899345 95899452 -23845446 - L2 LINE L2 -173 3140 3025 418 304 29 22 chr13 95899497 95899635 -23845263 - MIR SINE MIR -94 168 30 1224 234 125 31 chr13 95901962 95902386 -23842512 + MLT1D LTR MaLR 7 470 -35 1023 174 153 46 chr13 95903546 95903827 -23841071 - LOR1b LTR ERV1 -9 452 142 214 139 0 0 chr13 95903886 95903922 -23840976 - L2 LINE L2 -16 3297 3262 236 195 46 130 chr13 95903922 95903987 -23840911 - MIR SINE MIR -9 253 184 2168 119 3 0 chr13 95903987 95904289 -23840609 + AluSx SINE Alu 1 303 -9 236 195 46 130 chr13 95904289 95904364 -23840534 - MIR SINE MIR -78 184 31 2124 166 55 38 chr13 95904539 95905016 -23839882 + MER31A LTR ERV1 1 485 0 1668 157 0 34 chr13 95905201 95905495 -23839403 - AluJo SINE Alu -6 306 23 623 216 90 53 chr13 95906533 95906705 -23838193 - HAL1 LINE L1 -143 2364 2175 4132 122 6 11 chr13 95906705 95907342 -23837556 + MER51A LTR ERV1 1 634 0 623 216 90 53 chr13 95907342 95907470 -23837428 - HAL1 LINE L1 -332 2175 2053 321 243 59 44 chr13 95907470 95907595 -23837303 - L2 LINE L2 -4 3309 3183 552 297 62 10 chr13 95907595 95907787 -23837111 + MIR SINE MIR 2 203 -59 302 291 141 52 chr13 95907967 95908293 -23836605 - HAL1 LINE L1 -1521 986 632 237 364 0 0 chr13 95908294 95908382 -23836516 - HAL1 LINE L1 -2009 498 411 2524 185 26 35 chr13 95911718 95912285 -23832613 + MER68 LTR ERV1 1 562 0 1590 165 78 28 chr13 95913212 95913569 -23831329 + THE1C LTR MaLR 1 375 0 1684 132 94 3 chr13 95913902 95914189 -23830709 - AluSq SINE Alu 0 313 1 331 333 111 65 chr13 95914209 95914578 -23830320 + HAL1 LINE L1 239 624 -1883 523 299 47 23 chr13 95914625 95914926 -23829972 + HAL1 LINE L1 646 953 -1554 228 171 61 73 chr13 95915044 95915126 -23829772 - L1MA5 LINE L1 -4 6296 6216 2132 123 56 3 chr13 95915131 95915488 -23829410 - Tigger2 DNA MER2_type -63 2655 2280 182 108 54 0 chr13 95915587 95915624 -23829274 + A-rich Low_complexity Low_complexity 3 41 0 355 304 48 6 chr13 95915865 95916033 -23828865 + HAL1 LINE L1 1535 1709 -798 508 254 40 23 chr13 95916301 95916478 -23828420 + HAL1 LINE L1 2057 2236 -271 22 0 0 0 chr13 95917046 95917068 -23827830 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr13 95917205 95917261 -23827637 + AT_rich Low_complexity Low_complexity 1 56 0 235 247 91 52 chr13 95918030 95918107 -23826791 + L2 LINE L2 3168 3247 -25 287 321 161 16 chr13 95918284 95918477 -23826421 + MIR SINE MIR 20 240 -22 2259 94 10 0 chr13 95918975 95919283 -23825615 + AluSq SINE Alu 1 311 -2 24 32 0 0 chr13 95919432 95919463 -23825435 + AT_rich Low_complexity Low_complexity 1 31 0 464 193 18 35 chr13 95920760 95920874 -23824024 - MER34 LTR ERV1 0 542 431 6551 34 0 0 chr13 95920947 95921731 -23823167 - L1PA4 LINE L1 0 6155 5372 278 292 41 35 chr13 95921732 95921903 -23822995 - MER34 LTR ERV1 -114 428 257 590 305 46 35 chr13 95921933 95922192 -23822706 - MER34 LTR ERV1 -274 268 7 21 36 0 0 chr13 95922660 95922688 -23822210 + AT_rich Low_complexity Low_complexity 1 28 0 2124 125 0 0 chr13 95924523 95924804 -23820094 - AluSc SINE Alu -24 285 5 3382 189 70 70 chr13 95924943 95926663 -23818235 - L1MB7 LINE L1 -8 6176 4466 1829 139 17 3 chr13 95927916 95928203 -23816695 - AluSx SINE Alu -21 291 1 2053 143 0 0 chr13 95929352 95929652 -23815246 + AluSx SINE Alu 3 302 -10 34 0 0 0 chr13 95929979 95930013 -23814885 + AT_rich Low_complexity Low_complexity 1 34 0 946 351 109 10 chr13 95930771 95931452 -23813446 - L2 LINE L2 -632 2682 1935 2250 101 0 3 chr13 95932157 95932454 -23812444 + AluSc SINE Alu 1 296 -13 792 359 62 15 chr13 95932532 95932933 -23811965 + L2 LINE L2 2894 3313 0 222 345 24 0 chr13 95932942 95933026 -23811872 + MIR SINE MIR 106 191 -71 180 421 45 8 chr13 95934676 95934809 -23810089 - MIR SINE MIR -73 189 52 649 286 35 5 chr13 95935785 95935984 -23808914 + MIR SINE MIR 10 214 -48 23 68 0 0 chr13 95936381 95936425 -23808473 + AT_rich Low_complexity Low_complexity 1 44 0 1159 109 45 10 chr13 95936425 95936626 -23808272 - L1MA3 LINE L1 0 6305 6098 184 268 24 49 chr13 95939010 95939092 -23805806 + MIR SINE MIR 172 251 -11 309 296 17 35 chr13 95941511 95941626 -23803272 - LTR33 LTR ERVL -307 214 102 4871 190 38 55 chr13 95942011 95942272 -23802626 + L1 LINE L1 2961 3225 -2921 2122 108 3 3 chr13 95942272 95942558 -23802340 - AluSp SINE Alu -27 286 1 4871 190 38 55 chr13 95942558 95943523 -23801375 + L1 LINE L1 3225 4166 -1980 1723 183 59 17 chr13 95943526 95943935 -23800963 + L1MA7 LINE L1 5866 6291 0 352 260 87 8 chr13 95943952 95944079 -23800819 + HAL1 LINE L1 1431 1567 -940 35 71 0 0 chr13 95944210 95944280 -23800618 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr13 95944406 95944428 -23800470 + AT_rich Low_complexity Low_complexity 1 22 0 471 318 101 26 chr13 95944509 95945116 -23799782 + L1M4 LINE L1 4026 4677 -1469 268 253 40 20 chr13 95945586 95945685 -23799213 + L1M LINE L1 5255 5355 -1004 972 234 91 43 chr13 95945800 95945865 -23799033 - MER2 DNA MER2_type 0 345 285 2263 144 11 11 chr13 95945865 95946240 -23798658 - THE1C LTR MaLR 0 375 1 972 234 91 43 chr13 95946240 95946503 -23798395 - MER2 DNA MER2_type -60 285 1 21 0 0 0 chr13 95947847 95947868 -23797030 + AT_rich Low_complexity Low_complexity 1 21 0 670 188 45 0 chr13 95948245 95948378 -23796520 - L1MB1 LINE L1 -154 6014 5876 22 56 0 0 chr13 95948379 95948415 -23796483 + AT_rich Low_complexity Low_complexity 1 36 0 2202 119 0 0 chr13 95948854 95949165 -23795733 - AluY SINE Alu 0 311 1 621 228 76 19 chr13 95950114 95950272 -23794626 + FAM SINE Alu 1 167 -18 21 71 0 0 chr13 95954450 95954492 -23790406 + AT_rich Low_complexity Low_complexity 1 42 0 210 375 83 7 chr13 95955048 95955192 -23789706 - L3 LINE CR1 -856 721 567 318 130 0 0 chr13 95955223 95955277 -23789621 + L1MA7 LINE L1 6068 6121 -170 582 164 33 0 chr13 95955287 95955409 -23789489 + L1MA7 LINE L1 6166 6291 0 22 0 0 0 chr13 95955599 95955621 -23789277 + AT_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr13 95955799 95955825 -23789073 + (CA)n Simple_repeat Simple_repeat 1 26 0 498 130 20 0 chr13 95955856 95955941 -23788957 + MER51C LTR ERV1 562 640 0 247 302 43 0 chr13 95956009 95956148 -23788750 - L1MDa LINE L1 -3262 3278 3134 225 0 0 0 chr13 95956170 95956195 -23788703 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 423 0 0 0 chr13 95956194 95956241 -23788657 + (TG)n Simple_repeat Simple_repeat 2 48 0 3283 216 34 8 chr13 95956378 95957088 -23787810 - MSTD-int LTR MaLR -1005 730 3 2057 200 5 18 chr13 95957088 95957488 -23787410 - MSTD LTR MaLR 0 396 2 258 279 47 41 chr13 95957495 95957667 -23787231 - L1MDa LINE L1 -4786 1754 1582 603 301 30 64 chr13 95957683 95957979 -23786919 - L1MDa LINE L1 -6217 323 38 483 297 116 76 chr13 95958368 95958910 -23785988 + L2 LINE L2 1596 2159 -1155 642 245 144 0 chr13 95958993 95959181 -23785717 + MER58A DNA MER1_type 9 223 -1 233 213 88 52 chr13 95959822 95959958 -23784940 - L1MC/D LINE L1 -2008 5800 5660 2449 78 0 3 chr13 95960713 95961022 -23783876 - AluY SINE Alu -3 308 1 2156 148 109 0 chr13 95961544 95961930 -23782968 + MSTA LTR MaLR 1 428 0 212 239 0 0 chr13 95963559 95963605 -23781293 + GA-rich Low_complexity Low_complexity 3 48 0 26 30 0 0 chr13 95964461 95964494 -23780404 + AT_rich Low_complexity Low_complexity 1 33 0 242 360 12 0 chr13 95964510 95964596 -23780302 + L2 LINE L2 3186 3272 0 444 286 165 5 chr13 95964631 95964837 -23780061 + MIR SINE MIR 23 261 -1 25 51 0 0 chr13 95964941 95964980 -23779918 + AT_rich Low_complexity Low_complexity 1 39 0 234 321 38 15 chr13 95965180 95965311 -23779587 + LTR37B LTR ERV1 6 139 -329 608 246 7 22 chr13 95965862 95966000 -23778898 - MLT1E LTR MaLR -82 511 376 424 215 210 36 chr13 95966014 95966209 -23778689 - MLT1E LTR MaLR -323 270 42 25 75 0 0 chr13 95969406 95969459 -23775439 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr13 95969512 95969541 -23775357 + AT_rich Low_complexity Low_complexity 1 29 0 5368 241 110 10 chr13 95969867 95971883 -23773015 - L1M4 LINE L1 -1002 5642 3427 728 215 0 0 chr13 95971917 95972061 -23772837 + MLT1B LTR MaLR 27 170 -220 41006 64 5 1 chr13 95972075 95978197 -23766701 + L1PA5 LINE L1 1 6141 -13 993 216 60 9 chr13 95978200 95978432 -23766466 + MLT1B LTR MaLR 144 387 -3 2120 249 75 31 chr13 95978435 95979877 -23765021 - L1M4 LINE L1 -3251 3393 829 315 311 15 7 chr13 95979892 95980027 -23764871 - L1M4 LINE L1 -6218 428 293 21 57 0 0 chr13 95980774 95980809 -23764089 + AT_rich Low_complexity Low_complexity 1 35 0 236 275 37 46 chr13 95980883 95980992 -23763906 - MIR SINE MIR 0 262 155 29 0 0 0 chr13 95981245 95981274 -23763624 + AT_rich Low_complexity Low_complexity 1 29 0 2379 116 8 0 chr13 95981775 95982137 -23762761 - L1PB1 LINE L1 -3 6864 6500 4305 111 118 98 chr13 95982139 95983474 -23761424 + pTR5 LTR ERV1 743 2429 -9 13677 184 43 15 chr13 95983474 95986250 -23758648 - L1PB1 LINE L1 -351 6516 3611 2257 112 3 3 chr13 95986250 95986563 -23758335 - AluSq SINE Alu 0 313 1 13677 184 43 15 chr13 95986563 95987530 -23757368 - L1PB1 LINE L1 -3256 3611 2673 976 157 67 26 chr13 95987553 95987921 -23756977 - L1PB1 LINE L1 -5440 1423 848 6776 129 93 91 chr13 95987921 95989481 -23755417 + pTR5 LTR ERV1 281 2295 -143 3055 237 63 6 chr13 95989481 95990286 -23754612 - L1PB1 LINE L1 -6007 856 6 799 232 48 0 chr13 95991765 95991933 -23752965 - MER5A DNA MER1_type 0 189 14 317 311 88 40 chr13 95992871 95993019 -23751879 + MIR SINE MIR 32 186 -76 1296 176 27 61 chr13 95993037 95993332 -23751566 + AluSx SINE Alu 1 285 -27 180 97 0 0 chr13 95993332 95993363 -23751535 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 280 265 48 12 chr13 95995371 95995454 -23749444 - L2 LINE L2 -2 3311 3226 2334 93 0 0 chr13 95995784 95996084 -23748814 - AluY SINE Alu -7 304 5 293 100 0 0 chr13 95996554 95996594 -23748304 - 5S rRNA rRNA -81 40 1 23 0 0 0 chr13 95996885 95996908 -23747990 + AT_rich Low_complexity Low_complexity 1 23 0 198 302 0 0 chr13 95997260 95997313 -23747585 - L2 LINE L2 -1 3271 3219 307 343 42 39 chr13 95997432 95997764 -23747134 - L2 LINE L2 -1201 2113 1781 1606 120 17 0 chr13 95998849 95999082 -23745816 + AluSg/x SINE Alu 74 310 -2 198 263 18 0 chr13 95999406 95999463 -23745435 - MIR SINE MIR -112 150 93 507 296 51 43 chr13 95999675 95999932 -23744966 + MIR SINE MIR 3 261 -1 2488 179 24 70 chr13 96001190 96001821 -23743077 - L1MA9 LINE L1 0 6312 5711 244 260 164 0 chr13 96002831 96002935 -23741963 - L2 LINE L2 -2 3311 3191 2652 102 8 0 chr13 96003068 96003429 -23741469 - THE1B LTR MaLR 0 364 1 1695 164 6 19 chr13 96006365 96006677 -23738221 - AluJb SINE Alu -4 308 1 299 365 39 17 chr13 96006706 96006887 -23738011 - L2 LINE L2 -574 2740 2556 1781 138 7 31 chr13 96009073 96009401 -23735497 - AluSx SINE Alu 0 321 1 1253 242 60 6 chr13 96009833 96010197 -23734701 + MER63B DNA MER1_type 1 384 -52 202 310 70 0 chr13 96010493 96010564 -23734334 + L2 LINE L2 3186 3261 -11 1781 117 10 45 chr13 96012913 96013203 -23731695 + AluSc SINE Alu 2 281 -28 423 0 0 0 chr13 96013203 96013250 -23731648 + (CATA)n Simple_repeat Simple_repeat 4 50 0 387 170 32 43 chr13 96013719 96013813 -23731085 - MIR SINE MIR -106 156 64 23 54 0 0 chr13 96014568 96014605 -23730293 + AT_rich Low_complexity Low_complexity 1 37 0 316 200 43 0 chr13 96014830 96014945 -23729953 + (TA)n Simple_repeat Simple_repeat 2 121 0 22 35 0 0 chr13 96015751 96015780 -23729118 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr13 96016639 96016667 -23728231 + (CA)n Simple_repeat Simple_repeat 2 29 0 1245 247 38 30 chr13 96017116 96017556 -23727342 + L1ME1 LINE L1 5732 6163 -3 21 82 0 0 chr13 96017901 96017950 -23726948 + AT_rich Low_complexity Low_complexity 1 49 0 207 320 57 41 chr13 96019645 96019767 -23725131 + L2 LINE L2 3190 3313 0 2410 187 7 5 chr13 96020675 96021092 -23723806 - MSTB LTR MaLR -7 419 2 21 0 0 0 chr13 96022530 96022551 -23722347 + AT_rich Low_complexity Low_complexity 1 21 0 187 381 45 40 chr13 96023891 96024067 -23720831 + MIR SINE MIR 11 187 -75 3893 181 53 106 chr13 96024357 96025430 -23719468 + L1MC1 LINE L1 19 1032 -5394 227 31 31 0 chr13 96025430 96025462 -23719436 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3893 181 53 106 chr13 96025462 96025507 -23719391 + L1MC1 LINE L1 1032 1078 -5348 2427 129 6 6 chr13 96025603 96025967 -23718931 - THE1B LTR MaLR 0 364 1 9254 126 54 14 chr13 96025967 96027467 -23717431 - THE1B-int LTR MaLR 0 1580 21 310 143 0 32 chr13 96027452 96027515 -23717383 - THE1B-int LTR MaLR -1540 111 51 * 354 194 0 15 chr13 96028343 96028410 -23716488 - AluJb SINE Alu -185 117 52 1333 159 0 0 chr13 96028415 96028616 -23716282 - THE1B LTR MaLR -163 201 1 4872 192 54 25 chr13 96028652 96030555 -23714343 + L1MC1 LINE L1 4644 6599 -14 208 108 46 31 chr13 96030636 96030701 -23714197 + (TA)n Simple_repeat Simple_repeat 2 67 0 597 293 55 70 chr13 96031279 96031725 -23713173 + L1ME3A LINE L1 5318 5756 -414 2754 19 0 0 chr13 96031725 96032035 -23712863 + AluYb8 SINE Alu 1 310 -8 597 293 55 70 chr13 96032035 96032147 -23712751 + L1ME3A LINE L1 5756 5868 -302 21 57 0 0 chr13 96032355 96032390 -23712508 + AT_rich Low_complexity Low_complexity 1 35 0 272 310 122 48 chr13 96033322 96033674 -23711224 - L2 LINE L2 -117 3196 2819 36 40 0 0 chr13 96033727 96033777 -23711121 + AT_rich Low_complexity Low_complexity 1 50 0 1351 306 136 10 chr13 96034114 96034800 -23710098 + L2 LINE L2 372 1143 -2171 1150 278 120 20 chr13 96034973 96035433 -23709465 - L2 LINE L2 -414 2900 2395 5108 142 37 59 chr13 96035446 96036292 -23708606 - L1PA13 LINE L1 -2 6161 5298 1735 143 196 0 chr13 96036292 96036650 -23708248 - MSTA LTR MaLR 0 428 1 8703 188 18 5 chr13 96036650 96038279 -23706619 - MSTA-int LTR MaLR 0 1651 1 2042 138 140 8 chr13 96038279 96038657 -23706241 - MSTA LTR MaLR 0 428 1 5108 142 37 59 chr13 96038657 96038956 -23705942 - L1PA13 LINE L1 -862 5301 5032 3419 178 0 13 chr13 96038956 96039579 -23705319 + L1P LINE L1 3730 4344 -1802 354 338 52 14 chr13 96039796 96040006 -23704892 - Charlie8 DNA MER1_type -2198 219 2 214 369 64 28 chr13 96040037 96040178 -23704720 + MIR3 SINE MIR 31 176 -32 1632 275 79 44 chr13 96041655 96042069 -23702829 + L1MEc LINE L1 210 608 -5788 1783 130 67 57 chr13 96042069 96042400 -23702498 - MER1B DNA MER1_type 0 337 4 1632 275 79 44 chr13 96042400 96042760 -23702138 + L1MEc LINE L1 608 1011 -5385 2379 55 0 7 chr13 96043195 96043487 -23701411 + AluY SINE Alu 1 290 -21 21 57 0 0 chr13 96043494 96043529 -23701369 + AT_rich Low_complexity Low_complexity 1 35 0 6218 160 63 11 chr13 96043802 96044972 -23699926 - Tigger3b DNA MER2_type 0 1231 1 1842 112 0 0 chr13 96046748 96046999 -23697899 - AluSx SINE Alu -29 283 33 29 28 0 0 chr13 96047919 96047955 -23696943 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 96048036 96048060 -23696838 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 96048087 96048108 -23696790 + AT_rich Low_complexity Low_complexity 1 21 0 2359 118 15 0 chr13 96048363 96048703 -23696195 - THE1C LTR MaLR -30 345 1 1333 230 72 17 chr13 96048727 96049088 -23695810 - LTR52 LTR ERVL -9 412 32 5185 269 63 37 chr13 96049692 96052125 -23692773 + L1M3b LINE L1 4 2225 -4125 552 19 85 0 chr13 96052125 96052231 -23692667 + (TA)n Simple_repeat Simple_repeat 1 115 0 5185 269 63 37 chr13 96052231 96053037 -23691861 + L1M3b LINE L1 2225 3009 -3341 1672 171 25 0 chr13 96053568 96053848 -23691050 - AluSx SINE Alu -25 287 1 27 62 0 0 chr13 96055110 96055158 -23689740 + AT_rich Low_complexity Low_complexity 1 48 0 2020 108 0 17 chr13 96055234 96055521 -23689377 + AluSx SINE Alu 1 282 -30 186 71 0 0 chr13 96055523 96055551 -23689347 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1991 211 57 69 chr13 96055638 96055848 -23689050 + MLT1E2 LTR MaLR 1 212 -414 2140 132 32 22 chr13 96055848 96056219 -23688679 - THE1C LTR MaLR 0 375 1 1991 211 57 69 chr13 96056219 96056642 -23688256 + MLT1E2 LTR MaLR 212 626 0 22 0 0 0 chr13 96056711 96056733 -23688165 + AT_rich Low_complexity Low_complexity 1 22 0 576 265 7 27 chr13 96058712 96058859 -23686039 + MER63A DNA MER1_type 55 198 -12 3242 8 0 0 chr13 96058870 96059238 -23685660 + L1PA2 LINE L1 5788 6155 0 21 0 0 0 chr13 96059241 96059262 -23685636 + AT_rich Low_complexity Low_complexity 1 21 0 3123 268 89 60 chr13 96059365 96059927 -23684971 - MER89-int LTR ERV1 -1870 4931 4387 890 232 95 55 chr13 96059927 96060306 -23684592 - MLT2C1 LTR ERVL 0 397 4 3123 268 89 60 chr13 96060306 96061105 -23683793 - MER89-int LTR ERV1 -2414 4387 3526 2157 111 3 7 chr13 96061105 96061411 -23683487 + AluSg SINE Alu 1 305 -5 3123 268 89 60 chr13 96061411 96061442 -23683456 - MER89-int LTR ERV1 -3275 3526 3497 235 324 15 0 chr13 96061576 96061644 -23683254 + L2 LINE L2 3107 3175 -97 238 322 12 88 chr13 96062379 96062550 -23682348 - MLT1K LTR MaLR -162 426 269 186 257 40 99 chr13 96063366 96063467 -23681431 - MIR SINE MIR -83 179 85 257 128 0 0 chr13 96064386 96064425 -23680473 + MADE1 DNA Mariner 42 80 0 3521 21 61 0 chr13 96064865 96065293 -23679605 + L1PA3 LINE L1 5702 6155 0 2637 124 2 2 chr13 96065783 96066186 -23678712 + L1PB1 LINE L1 5404 5806 -345 248 154 24 32 chr13 96066188 96066311 -23678587 + (TA)n Simple_repeat Simple_repeat 2 123 0 489 58 0 0 chr13 96066318 96066387 -23678511 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2161 120 11 17 chr13 96066388 96066746 -23678152 + L1PB1 LINE L1 5794 6149 -2 21 0 0 0 chr13 96066899 96066920 -23677978 + AT_rich Low_complexity Low_complexity 1 21 0 2326 43 40 17 chr13 96067100 96067402 -23677496 + AluY SINE Alu 1 309 -2 29 47 0 0 chr13 96068134 96068177 -23676721 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr13 96069553 96069589 -23675309 + AT_rich Low_complexity Low_complexity 1 36 0 1122 142 4 0 chr13 96069682 96069959 -23674939 + (TA)n Simple_repeat Simple_repeat 1 278 0 373 281 0 0 chr13 96069962 96070051 -23674847 - L1MC4 LINE L1 -1339 6703 6615 256 253 0 22 chr13 96070056 96070147 -23674751 + L1MC4 LINE L1 6614 6702 -1340 233 267 0 22 chr13 96070114 96070204 -23674694 - L1MC4 LINE L1 -1339 6703 6616 * 1754 180 64 0 chr13 96071456 96071800 -23673098 + MER47A DNA MER2_type 1 366 0 754 336 13 4 chr13 96072060 96072298 -23672600 + MIR SINE MIR 23 262 0 24 32 0 0 chr13 96072395 96072426 -23672472 + AT_rich Low_complexity Low_complexity 1 31 0 2271 222 56 13 chr13 96072887 96073427 -23671471 - MER90 LTR ERV1 -10 565 3 5818 109 10 22 chr13 96076661 96077740 -23667158 + L1PA14 LINE L1 4879 5945 -216 1850 141 10 3 chr13 96077740 96078037 -23666861 + AluSx SINE Alu 1 299 -13 5818 109 10 22 chr13 96078037 96078247 -23666651 + L1PA14 LINE L1 5945 6156 -5 340 265 71 0 chr13 96078397 96078495 -23666403 + L3 LINE CR1 1371 1475 -102 1296 234 30 25 chr13 96078658 96079021 -23665877 + MLT1A1 LTR MaLR 1 365 0 3585 233 114 49 chr13 96079355 96080905 -23663993 - L1MCa LINE L1 -3867 2559 1112 872 158 0 0 chr13 96080905 96081044 -23663854 - L1PA10 LINE L1 -11 6157 6019 3585 233 114 49 chr13 96081044 96081533 -23663365 - L1MCa LINE L1 -5314 1112 656 1789 174 33 41 chr13 96081533 96081900 -23662998 + THE1B LTR MaLR 1 364 0 3585 233 114 49 chr13 96081900 96082156 -23662742 - L1MCa LINE L1 -5770 656 6 24 0 0 0 chr13 96082506 96082530 -23662368 + AT_rich Low_complexity Low_complexity 1 24 0 2656 0 0 0 chr13 96082536 96082822 -23662076 + AluYa5 SINE Alu 18 303 -8 224 298 88 70 chr13 96083508 96083622 -23661276 - L2 LINE L2 -1 3271 3156 258 254 48 0 chr13 96083766 96083829 -23661069 - MIR3 SINE MIR -11 197 132 280 197 16 0 chr13 96086863 96086924 -23657974 - HsTC2 DNA Tc2 -1070 828 767 545 124 146 0 chr13 96086931 96087020 -23657878 - MER1B DNA MER1_type -72 267 166 1880 148 26 32 chr13 96087698 96088037 -23656861 + MER1B DNA MER1_type 1 337 0 21 89 0 0 chr13 96088292 96088348 -23656550 + AT_rich Low_complexity Low_complexity 1 56 0 331 245 31 10 chr13 96088663 96088761 -23656137 + L2 LINE L2 3208 3307 -6 26 0 0 0 chr13 96088911 96088937 -23655961 + AT_rich Low_complexity Low_complexity 1 26 0 292 240 166 23 chr13 96088979 96089139 -23655759 - MIR SINE MIR -68 140 10 3180 147 69 9 chr13 96089276 96089842 -23655056 - MER6A DNA MER2_type -5 600 1 24 0 0 0 chr13 96092177 96092201 -23652697 + AT_rich Low_complexity Low_complexity 1 24 0 1277 126 3 25 chr13 96092354 96092620 -23652278 + MER1B DNA MER1_type 1 100 -105 253 294 64 0 chr13 96092986 96093095 -23651803 - L1MC4 LINE L1 -1340 6702 6587 241 275 84 0 chr13 96093073 96093204 -23651694 + L1MC4a LINE L1 4574 4715 -1431 * 334 292 114 72 chr13 96093230 96093719 -23651179 + L1MC4a LINE L1 4744 5253 -893 600 307 65 35 chr13 96093965 96094336 -23650562 + L1MC4a LINE L1 5554 5935 -1873 1404 154 21 107 chr13 96095324 96095661 -23649237 + AluYb8 SINE Alu 1 308 -10 513 57 11 102 chr13 96096255 96096343 -23648555 - MADE1 DNA Mariner 0 80 1 365 220 31 136 chr13 96096607 96096798 -23648100 - L2 LINE L2 0 3313 3143 1337 223 46 25 chr13 96096802 96097125 -23647773 + MER58B DNA MER1_type 12 341 0 388 296 80 25 chr13 96097419 96097581 -23647317 - MIR SINE MIR -72 190 20 369 350 103 41 chr13 96098422 96098594 -23646304 - L2 LINE L2 0 3313 3153 2389 90 0 0 chr13 96098594 96098894 -23646004 + AluSx SINE Alu 1 300 -12 369 350 103 41 chr13 96098894 96099016 -23645882 - L2 LINE L2 -160 3153 3040 1558 184 106 3 chr13 96099016 96099347 -23645551 - MLT1A1 LTR MaLR 0 365 1 369 350 103 41 chr13 96099347 96100053 -23644845 - L2 LINE L2 -273 3040 2239 442 320 100 44 chr13 96100170 96100511 -23644387 - L2 LINE L2 -1315 1999 1640 1943 208 20 2 chr13 96100822 96101265 -23643633 + L1MB7 LINE L1 4870 5320 -826 305 93 93 0 chr13 96101325 96101379 -23643519 + Tigger5 DNA MER2_type 2242 2300 -23 413 188 0 25 chr13 96101465 96101545 -23643353 - Tigger5 DNA MER2_type -2245 78 1 3484 189 42 46 chr13 96101549 96101967 -23642931 + L1MB7 LINE L1 5325 5743 -441 1611 159 0 58 chr13 96101967 96102276 -23642622 + AluJb SINE Alu 6 296 -16 3484 189 42 46 chr13 96102276 96102721 -23642177 + L1MB7 LINE L1 5743 6184 0 3902 88 37 14 chr13 96104728 96105317 -23639581 - L1MA2 LINE L1 0 6304 5702 1226 151 151 23 chr13 96105718 96105789 -23639109 - MSTA LTR MaLR 0 428 367 2590 43 0 0 chr13 96105789 96106092 -23638806 + AluY SINE Alu 1 303 -8 1226 151 151 23 chr13 96106092 96106279 -23638619 - MSTA LTR MaLR -61 367 137 396 0 0 0 chr13 96106860 96106904 -23637994 + (CA)n Simple_repeat Simple_repeat 1 44 0 1684 202 47 12 chr13 96107309 96107650 -23637248 - MLT1A1 LTR MaLR -12 353 1 21 57 0 0 chr13 96108727 96108762 -23636136 + AT_rich Low_complexity Low_complexity 1 35 0 345 47 0 0 chr13 96109175 96109218 -23635680 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 333 235 62 12 chr13 96109219 96109300 -23635598 - L2 LINE L2 -16 3256 3172 440 324 129 9 chr13 96109759 96109969 -23634929 - MIR SINE MIR -8 254 20 249 284 75 22 chr13 96110010 96110144 -23634754 - HAL1 LINE L1 -134 2373 2233 234 258 54 0 chr13 96110201 96110294 -23634604 - L1MC4a LINE L1 -1850 5958 5861 21 0 0 0 chr13 96110918 96110939 -23633959 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr13 96111078 96111126 -23633772 + AT_rich Low_complexity Low_complexity 1 48 0 50 99 0 0 chr13 96113754 96113916 -23630982 + AT_rich Low_complexity Low_complexity 1 162 0 252 322 0 0 chr13 96114099 96114186 -23630712 + L1ME LINE L1 5736 5822 -299 1438 131 56 0 chr13 96114216 96114484 -23630414 + L1MA8 LINE L1 6005 6287 -4 210 294 118 24 chr13 96114524 96114609 -23630289 + L2 LINE L2 3160 3252 -20 602 342 92 59 chr13 96115509 96116330 -23628568 - L2 LINE L2 -2 3311 2460 1417 212 45 14 chr13 96116340 96116699 -23628199 + MLT1A2 LTR MaLR 1 370 -4 1696 110 41 76 chr13 96116729 96117046 -23627852 - AluY SINE Alu -5 306 1 229 286 159 32 chr13 96117059 96117185 -23627713 - L2 LINE L2 -865 2449 2308 564 323 94 47 chr13 96117280 96117835 -23627063 - L2 LINE L2 -1438 1876 1296 381 344 153 13 chr13 96117840 96118218 -23626680 - L2 LINE L2 -2440 874 444 229 304 72 22 chr13 96118290 96118428 -23626470 - L2 LINE L2 -1971 1343 1199 260 256 46 0 chr13 96118438 96118512 -23626386 - MLT1H1 LTR MaLR -449 146 35 217 353 59 8 chr13 96119067 96119186 -23625712 - MIR3 SINE MIR -41 167 43 2045 135 0 0 chr13 96119296 96119585 -23625313 - AluSx SINE Alu -22 290 2 473 204 26 26 chr13 96120759 96120872 -23624026 + LTR40a LTR ERVL 407 519 0 206 286 0 0 chr13 96121177 96121226 -23623672 + L2 LINE L2 3186 3234 -38 756 280 36 18 chr13 96121985 96122210 -23622688 - MLT1E2 LTR MaLR 0 626 398 737 230 180 20 chr13 96122205 96122499 -23622399 - MLT1E1 LTR MaLR -347 307 4 * 192 304 0 0 chr13 96122501 96122547 -23622351 - L2 LINE L2 -50 3222 3177 237 33 0 0 chr13 96122751 96122781 -23622117 + (TA)n Simple_repeat Simple_repeat 2 31 0 1499 346 46 22 chr13 96122892 96123804 -23621094 - L2 LINE L2 -556 2758 1825 354 346 31 0 chr13 96123838 96123968 -23620930 - L2 LINE L2 -2927 387 254 4962 154 19 7 chr13 96124467 96125447 -23619451 - L1PA16 LINE L1 -3 6163 5135 2001 126 11 0 chr13 96125447 96125732 -23619166 - AluSx SINE Alu -16 296 9 4962 154 19 7 chr13 96125732 96125764 -23619134 - L1PA16 LINE L1 -1031 5135 5105 2270 215 8 9 chr13 96125768 96126293 -23618605 + L1 LINE L1 4199 4722 -1424 2258 179 19 5 chr13 96127327 96127745 -23617153 - MSTB LTR MaLR 0 426 3 196 332 218 34 chr13 96128232 96128530 -23616368 - L2 LINE L2 -2016 1298 946 377 238 12 12 chr13 96128712 96128796 -23616102 - L2 LINE L2 -2 3311 3228 225 0 0 0 chr13 96129087 96129112 -23615786 + (A)n Simple_repeat Simple_repeat 1 25 0 280 173 0 40 chr13 96129519 96129594 -23615304 + CT-rich Low_complexity Low_complexity 2 73 0 290 67 22 0 chr13 96129665 96129710 -23615188 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 3986 32 0 0 chr13 96129710 96130178 -23614720 - L1PA3 LINE L1 -24 6131 5664 564 210 109 0 chr13 96130181 96130300 -23614598 - FRAM SINE Alu -44 132 1 6573 133 9 29 chr13 96130325 96131709 -23613189 - L1MA2 LINE L1 0 6304 4950 22 56 0 0 chr13 96132311 96132347 -23612551 + AT_rich Low_complexity Low_complexity 1 36 0 1751 165 101 0 chr13 96134604 96134932 -23609966 - MER46B DNA MER2_type 0 236 1 286 233 147 26 chr13 96135238 96135354 -23609544 + MIR SINE MIR 123 252 -10 1967 110 0 4 chr13 96136964 96137237 -23607661 - AluSx SINE Alu -37 275 4 220 259 95 88 chr13 96137241 96137388 -23607510 - MIR SINE MIR -112 150 3 313 266 92 37 chr13 96138911 96139020 -23605878 - L2 LINE L2 -10 3303 3189 249 336 76 25 chr13 96140667 96140786 -23604112 + L2 LINE L2 2291 2415 -899 771 229 18 6 chr13 96140875 96141045 -23603853 - MER45A DNA AcHobo -2 176 5 1035 193 4 103 chr13 96141162 96141223 -23603675 - MER20 DNA MER1_type 0 219 154 2923 127 17 4 chr13 96141223 96141696 -23603202 - L1PA16 LINE L1 -9 6157 5679 1035 193 4 103 chr13 96141696 96141877 -23603021 - MER20 DNA MER1_type -65 154 1 2006 108 18 0 chr13 96142691 96142969 -23601929 - AluSq SINE Alu -30 283 1 213 241 0 0 chr13 96142990 96143044 -23601854 + GA-rich Low_complexity Low_complexity 2 55 0 23 33 0 0 chr13 96144508 96144538 -23600360 + AT_rich Low_complexity Low_complexity 1 30 0 208 111 56 0 chr13 96144779 96144815 -23600083 + CT-rich Low_complexity Low_complexity 4 41 0 1878 283 93 39 chr13 96145615 96145893 -23599005 - L2 LINE L2 0 3313 3052 1381 211 24 49 chr13 96145893 96146263 -23598635 + MLT1A1 LTR MaLR 5 365 0 1878 283 93 39 chr13 96146263 96147065 -23597833 - L2 LINE L2 -261 3052 2179 1483 114 5 0 chr13 96147090 96147301 -23597597 - AluSp SINE Alu -15 298 87 304 329 34 7 chr13 96147709 96147855 -23597043 + MIR3 SINE MIR 53 202 -6 290 357 62 11 chr13 96148363 96148539 -23596359 - MIR SINE MIR -27 235 48 275 250 18 9 chr13 96149210 96149322 -23595576 + (TA)n Simple_repeat Simple_repeat 2 114 0 998 122 16 4 chr13 96150192 96150371 -23594527 + L1MA7 LINE L1 5852 6037 -263 1097 138 32 0 chr13 96150375 96150564 -23594334 + L1MA7 LINE L1 6094 6288 -3 752 263 76 38 chr13 96151858 96152094 -23592804 - MIR SINE MIR -16 246 2 193 402 11 0 chr13 96153486 96153578 -23591320 + L3 LINE CR1 1468 1560 -17 979 119 0 0 chr13 96153578 96153712 -23591186 - AluSg/x SINE Alu -10 299 166 259 416 26 0 chr13 96153756 96153910 -23590988 - MIR3 SINE MIR -13 195 38 621 54 0 33 chr13 96154732 96154824 -23590074 - L1PA8 LINE L1 0 6172 6084 215 157 20 0 chr13 96155961 96156012 -23588886 + (TA)n Simple_repeat Simple_repeat 1 52 0 289 386 7 7 chr13 96156468 96156608 -23588290 + MIR SINE MIR 21 160 -102 246 400 25 8 chr13 96156637 96156757 -23588141 - L2 LINE L2 -6 3266 3145 183 205 0 0 chr13 96156752 96156791 -23588107 + MIR SINE MIR 167 205 -57 * 4173 18 0 2 chr13 96159490 96159984 -23584914 - L1PA3 LINE L1 -1410 4736 4244 7712 20 0 0 chr13 96159986 96161464 -23583434 + L1PA3 LINE L1 4719 6190 0 290 289 0 36 chr13 96163284 96163367 -23581531 + MIR SINE MIR 48 127 -135 746 351 115 4 chr13 96163431 96163952 -23580946 - L2 LINE L2 -1003 2311 1733 294 264 14 0 chr13 96164232 96164304 -23580594 - MER112 DNA MER1_type -181 79 7 675 189 24 0 chr13 96164376 96164503 -23580395 + FLAM_C SINE Alu 1 130 -3 278 307 30 103 chr13 96164950 96165038 -23579860 - MLT1L LTR MaLR -200 415 322 1535 200 93 60 chr13 96165038 96165460 -23579438 + MLT1D LTR MaLR 1 443 -62 2312 90 0 13 chr13 96165460 96165772 -23579126 - AluY SINE Alu -3 308 1 1535 200 93 60 chr13 96165772 96165834 -23579064 + MLT1D LTR MaLR 443 501 -4 278 307 30 103 chr13 96165834 96166152 -23578746 - MLT1L LTR MaLR -293 322 39 2121 108 0 7 chr13 96166218 96166514 -23578384 + AluSq SINE Alu 1 294 -19 339 361 42 45 chr13 96166556 96166869 -23578029 + L2 LINE L2 2487 2798 -516 5745 139 60 33 chr13 96167194 96167223 -23577675 - Tigger3b DNA MER2_type -1798 1230 1203 2425 99 37 3 chr13 96167223 96167575 -23577323 - THE1B LTR MaLR 0 364 1 5745 139 60 33 chr13 96167575 96168218 -23576680 - Tigger3b DNA MER2_type -1825 1203 512 1431 221 0 33 chr13 96168218 96168521 -23576377 + AluJo SINE Alu 2 294 -18 5745 139 60 33 chr13 96168521 96168976 -23575922 - Tigger3b DNA MER2_type -2516 512 71 2201 112 6 10 chr13 96169095 96169407 -23575491 - AluSx SINE Alu -1 311 1 1994 126 35 0 chr13 96170065 96170351 -23574547 + AluSq SINE Alu 1 296 -17 653 214 82 41 chr13 96171080 96171233 -23573665 - MER3 DNA MER1_type -5 204 40 2051 118 24 0 chr13 96171233 96171520 -23573378 - AluSx SINE Alu -18 294 1 653 214 82 41 chr13 96171520 96171562 -23573336 - MER3 DNA MER1_type -169 40 1 25 31 0 0 chr13 96172196 96172228 -23572670 + AT_rich Low_complexity Low_complexity 1 32 0 467 234 111 54 chr13 96172228 96172438 -23572460 + L1ME3A LINE L1 5934 6155 -9 192 77 0 0 chr13 96172490 96172516 -23572382 + (TG)n Simple_repeat Simple_repeat 2 27 0 699 266 51 68 chr13 96173633 96173986 -23570912 - L2 LINE L2 -8 3305 2959 482 154 0 0 chr13 96174522 96174600 -23570298 + MADE1 DNA Mariner 1 78 -2 229 369 89 6 chr13 96174869 96175037 -23569861 + MIR SINE MIR 50 231 -31 21 0 0 0 chr13 96176590 96176611 -23568287 + AT_rich Low_complexity Low_complexity 1 21 0 1633 45 9 22 chr13 96176658 96176881 -23568017 + L1PA5 LINE L1 5934 6153 -1 22 0 0 0 chr13 96176900 96176922 -23567976 + AT_rich Low_complexity Low_complexity 1 22 0 222 361 125 0 chr13 96178154 96178298 -23566600 + MIR SINE MIR 91 252 -10 2546 25 0 0 chr13 96178424 96178760 -23566138 - AluY SINE Alu 0 336 1 28 0 0 0 chr13 96179032 96179060 -23565838 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 96179299 96179321 -23565577 + AT_rich Low_complexity Low_complexity 1 22 0 315 345 90 3 chr13 96179351 96179652 -23565246 - L1MCa LINE L1 -4641 1966 1443 439 322 59 44 chr13 96179733 96180006 -23564892 - L1MCa LINE L1 -5396 1020 744 829 142 7 27 chr13 96181204 96181352 -23563546 - MER50 LTR ERV1 -23 711 567 7192 122 16 3 chr13 96181352 96182491 -23562407 - L1P LINE L1 -869 5277 4124 3245 159 19 14 chr13 96182495 96183060 -23561838 - MER50 LTR ERV1 -164 570 3 1811 181 75 26 chr13 96184557 96185026 -23559872 - LTR22B LTR ERVK 0 492 1 1450 271 107 40 chr13 96185328 96186449 -23558449 + L1ME1 LINE L1 972 2141 -4399 2379 255 74 44 chr13 96186578 96187456 -23557442 + L1ME1 LINE L1 2361 3322 -3218 954 153 16 63 chr13 96187456 96187646 -23557252 - L1PB4 LINE L1 -12 6144 5964 2379 255 74 44 chr13 96187646 96188313 -23556585 + L1ME1 LINE L1 3322 3967 -2573 2092 256 74 18 chr13 96188425 96189279 -23555619 + L1ME1 LINE L1 4560 5461 -1079 207 146 0 0 chr13 96189332 96189373 -23555525 + (TA)n Simple_repeat Simple_repeat 1 41 0 2592 253 45 23 chr13 96189561 96190482 -23554416 + L1ME1 LINE L1 5602 6532 -28 31 26 0 0 chr13 96190798 96190836 -23554062 + AT_rich Low_complexity Low_complexity 1 38 0 242 340 68 37 chr13 96191342 96191533 -23553365 + L2 LINE L2 2857 3053 -219 180 158 0 0 chr13 96191724 96191762 -23553136 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 35 0 0 0 chr13 96192306 96192341 -23552557 + AT_rich Low_complexity Low_complexity 1 35 0 1973 127 3 3 chr13 96192342 96192633 -23552265 - AluSc SINE Alu -18 291 1 452 327 111 0 chr13 96192815 96193023 -23551875 - MIR SINE MIR -27 235 5 456 310 52 6 chr13 96193304 96193478 -23551420 - L2 LINE L2 -23 3290 3109 200 319 44 22 chr13 96193849 96193940 -23550958 + L2 LINE L2 3220 3312 -1 211 245 0 20 chr13 96196602 96196651 -23548247 + (TG)n Simple_repeat Simple_repeat 1 48 0 355 87 87 0 chr13 96197897 96197966 -23546932 + CT-rich Low_complexity Low_complexity 2 76 0 2139 135 20 3 chr13 96198002 96198357 -23546541 - MER46B DNA MER2_type 0 236 1 392 264 61 25 chr13 96198887 96199050 -23545848 - MIR SINE MIR -89 173 5 204 301 62 62 chr13 96199523 96199636 -23545262 - L2 LINE L2 -1 3312 3200 30 59 0 0 chr13 96200526 96200577 -23544321 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr13 96200706 96200735 -23544163 + AT_rich Low_complexity Low_complexity 1 29 0 550 194 29 14 chr13 96200832 96200971 -23543927 + Charlie7 DNA MER1_type 968 1108 -1504 245 261 0 0 chr13 96201017 96201082 -23543816 + L2 LINE L2 2198 2262 -1052 40706 62 13 2 chr13 96201104 96207145 -23537753 + L1PA5 LINE L1 39 6147 -7 516 221 89 32 chr13 96207161 96207351 -23537547 + Charlie7 DNA MER1_type 1091 1291 -1321 869 286 74 41 chr13 96207438 96208099 -23536799 + Charlie7 DNA MER1_type 1425 2107 -505 2965 150 37 2 chr13 96208185 96208699 -23536199 - Tigger1 DNA MER2_type -73 2345 1814 1098 166 45 5 chr13 96208694 96208893 -23536005 + MER2 DNA MER2_type 139 345 0 * 387 0 0 0 chr13 96209809 96209852 -23535046 + (TG)n Simple_repeat Simple_repeat 1 43 0 189 276 10 71 chr13 96210489 96210587 -23534311 - L2 LINE L2 -1 3312 3221 958 348 120 35 chr13 96210781 96211480 -23533418 - L2 LINE L2 -400 2914 2092 1416 0 29 0 chr13 96211480 96211654 -23533244 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 958 348 120 35 chr13 96211654 96212024 -23532874 - L2 LINE L2 -1222 2092 1755 22 0 0 0 chr13 96213061 96213083 -23531815 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 96213197 96213223 -23531675 + AT_rich Low_complexity Low_complexity 1 26 0 1663 143 14 14 chr13 96214173 96214466 -23530432 + AluJb SINE Alu 1 293 -19 470 289 52 71 chr13 96214685 96214993 -23529905 - MLT1J1 LTR MaLR -106 340 39 250 296 65 9 chr13 96215267 96215375 -23529523 + L2 LINE L2 2672 2785 -529 23 0 0 0 chr13 96215745 96215768 -23529130 + AT_rich Low_complexity Low_complexity 1 23 0 234 237 0 0 chr13 96215827 96215924 -23528974 + (TA)n Simple_repeat Simple_repeat 2 98 0 214 253 178 48 chr13 96216645 96216791 -23528107 - L2 LINE L2 0 3313 3149 380 234 16 0 chr13 96218359 96218448 -23526450 + AluJ/FLAM SINE Alu 1 72 -230 753 265 15 16 chr13 96219751 96219995 -23524903 + L1M4 LINE L1 608 839 -6329 3766 210 55 4 chr13 96219998 96220949 -23523949 + L1M4 LINE L1 2080 3078 -4090 2386 142 16 18 chr13 96220949 96221385 -23523513 + L1MA5 LINE L1 5860 6294 -6 895 278 49 38 chr13 96221397 96221846 -23523052 + L1M4 LINE L1 5757 6210 -957 21 57 0 0 chr13 96222082 96222117 -23522781 + AT_rich Low_complexity Low_complexity 1 35 0 520 284 136 34 chr13 96223797 96224199 -23520699 - MER68 LTR ERV1 -127 435 1 524 285 84 66 chr13 96224535 96224977 -23519921 - MLT1J2 LTR MaLR 0 450 1 1602 11 0 0 chr13 96226486 96226666 -23518232 - AluYb8 SINE Alu -6 312 133 3636 61 0 0 chr13 96226997 96227459 -23517439 - L1PA5 LINE L1 0 6154 5693 21 71 0 0 chr13 96227921 96227963 -23516935 + AT_rich Low_complexity Low_complexity 1 42 0 819 139 64 11 chr13 96228557 96228727 -23516171 - L1MA8 LINE L1 -6 6285 6103 2550 131 16 49 chr13 96228727 96229176 -23515722 + Tigger2a DNA MER2_type 1 434 0 819 139 64 11 chr13 96229176 96229192 -23515706 - L1MA8 LINE L1 -188 6103 6089 2199 115 3 3 chr13 96230663 96230968 -23513930 + AluSg SINE Alu 1 305 -5 1782 134 81 39 chr13 96231510 96231868 -23513030 - THE1C LTR MaLR -2 373 1 191 331 0 113 chr13 96233657 96233781 -23511117 - L2 LINE L2 -30 3242 3133 511 311 79 9 chr13 96234817 96235158 -23509740 - L1ME4a LINE L1 -191 5930 5566 255 202 184 18 chr13 96235925 96236034 -23508864 + LOR1a LTR ERV1 1 127 -370 25 0 0 0 chr13 96236249 96236274 -23508624 + AT_rich Low_complexity Low_complexity 1 25 0 2050 117 0 0 chr13 96236566 96236847 -23508051 + AluSc SINE Alu 3 283 -26 198 103 0 0 chr13 96236874 96236903 -23507995 + (TA)n Simple_repeat Simple_repeat 2 30 0 312 293 24 49 chr13 96237127 96237250 -23507648 + MIR3 SINE MIR 44 163 -45 2642 27 0 0 chr13 96237548 96237849 -23507049 - AluY SINE Alu -10 301 1 716 266 103 65 chr13 96238831 96239338 -23505560 - HAL1 LINE L1 -1874 633 108 1690 178 42 24 chr13 96240959 96241342 -23503556 - L1MA8 LINE L1 -5 6286 5897 5794 178 45 1 chr13 96241897 96243994 -23500904 + L1MA8 LINE L1 4104 6287 -4 2331 183 14 5 chr13 96244036 96244457 -23500441 + MSTA LTR MaLR 4 428 0 252 86 0 0 chr13 96245595 96245630 -23499268 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 203 167 0 0 chr13 96246177 96246213 -23498685 + (CATA)n Simple_repeat Simple_repeat 4 39 0 29 0 0 0 chr13 96247805 96247834 -23497064 + AT_rich Low_complexity Low_complexity 1 29 0 1515 202 68 59 chr13 96247994 96248450 -23496448 - MLT1C LTR MaLR 0 467 8 208 200 50 0 chr13 96249269 96249329 -23495569 + MIR SINE MIR 166 228 -34 237 244 0 150 chr13 96249533 96249660 -23495238 - LTR41 LTR ERVL -156 617 510 435 283 60 24 chr13 96249945 96250111 -23494787 - LTR41 LTR ERVL -595 178 7 283 291 165 0 chr13 96250253 96250380 -23494518 - MIR SINE MIR -1 261 114 1568 175 15 0 chr13 96251553 96251827 -23493071 - AluJo SINE Alu -14 298 21 219 296 15 89 chr13 96252211 96252346 -23492552 + MIR SINE MIR 60 184 -78 348 307 36 22 chr13 96252646 96252783 -23492115 + MIR SINE MIR 69 207 -55 455 306 32 0 chr13 96253928 96254085 -23490813 + MIR SINE MIR 73 234 -28 797 160 8 0 chr13 96254591 96254722 -23490176 - FLAM_C SINE Alu -1 132 1 1397 239 54 48 chr13 96254874 96255376 -23489522 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr13 96256731 96256752 -23488146 + AT_rich Low_complexity Low_complexity 1 21 0 198 205 0 0 chr13 96257449 96257488 -23487410 + MIR SINE MIR 218 256 -6 1773 178 0 0 chr13 96257935 96258238 -23486660 + L1PA16 LINE L1 5855 6157 -9 26 30 0 0 chr13 96258758 96258791 -23486107 + AT_rich Low_complexity Low_complexity 1 33 0 592 277 83 16 chr13 96261312 96261554 -23483344 - MIR SINE MIR -3 259 2 369 0 0 0 chr13 96261985 96262026 -23482872 + (CA)n Simple_repeat Simple_repeat 2 42 0 361 263 97 17 chr13 96262738 96262913 -23481985 + Charlie4a DNA MER1_type 127 315 -193 1389 268 66 14 chr13 96263245 96263686 -23481212 - MER74B LTR ERVL -85 537 74 390 42 0 0 chr13 96263710 96263758 -23481140 + (CA)n Simple_repeat Simple_repeat 2 49 0 225 241 17 0 chr13 96265530 96265588 -23479310 + L1P LINE L1 2749 2807 -3339 241 188 38 12 chr13 96266598 96266678 -23478220 + (TA)n Simple_repeat Simple_repeat 2 83 0 28 86 0 0 chr13 96266735 96266805 -23478093 + AT_rich Low_complexity Low_complexity 1 70 0 321 257 35 26 chr13 96267083 96267196 -23477702 - L1M4 LINE L1 -2323 3823 3710 720 243 11 6 chr13 96267231 96267412 -23477486 - L1MB7 LINE L1 -11 6173 5992 35 63 0 0 chr13 96267618 96267681 -23477217 + AT_rich Low_complexity Low_complexity 1 63 0 188 295 64 0 chr13 96268819 96268897 -23476001 - L2 LINE L2 -1029 2285 2203 189 275 130 0 chr13 96269557 96269626 -23475272 - L2 LINE L2 -1288 2026 1949 247 237 21 43 chr13 96270309 96270402 -23474496 - MER103 DNA DNA -10 156 66 253 213 149 11 chr13 96271670 96271764 -23473134 - L1ME2 LINE L1 -21 6143 6037 357 24 0 0 chr13 96272470 96272512 -23472386 + (TG)n Simple_repeat Simple_repeat 1 42 0 322 282 21 10 chr13 96272539 96272828 -23472070 + CT-rich Low_complexity Low_complexity 1 292 0 35 78 0 0 chr13 96273739 96273816 -23471082 + AT_rich Low_complexity Low_complexity 1 77 0 2547 31 6 31 chr13 96274049 96274368 -23470530 + AluY SINE Alu 1 311 0 4234 40 2 0 chr13 96275117 96275639 -23469259 - L1P LINE L1 -1103 5043 4521 558 85 51 28 chr13 96275743 96275919 -23468979 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 30 0 0 chr13 96275919 96275952 -23468946 + AT_rich Low_complexity Low_complexity 1 33 0 295 93 29 58 chr13 96275952 96276091 -23468807 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 773 197 6 39 chr13 96276098 96276276 -23468622 + AluJb SINE Alu 140 311 -1 456 237 0 0 chr13 96276680 96276773 -23468125 - Tigger5 DNA MER2_type 0 2323 2231 331 203 14 27 chr13 96276820 96276894 -23468004 - Tigger5 DNA MER2_type 0 2323 2251 264 214 0 18 chr13 96276862 96276918 -23467980 - Tigger5 DNA MER2_type -2268 55 1 * 261 377 23 15 chr13 96277471 96277601 -23467297 - MIR SINE MIR -61 147 17 279 168 0 133 chr13 96278033 96278146 -23466752 + MER103 DNA DNA 69 166 0 2292 46 4 4 chr13 96278156 96278464 -23466434 + AluY SINE Alu 1 308 0 481 188 20 0 chr13 96279470 96279571 -23465327 + MER39 LTR ERV1 1 103 -604 807 67 0 0 chr13 96280219 96280323 -23464575 - L1PA5 LINE L1 0 6154 6051 23 33 0 0 chr13 96281058 96281088 -23463810 + AT_rich Low_complexity Low_complexity 1 30 0 270 320 56 21 chr13 96282314 96282548 -23462350 + HAL1 LINE L1 2262 2503 -4 364 326 40 29 chr13 96282565 96282740 -23462158 + HAL1 LINE L1 1070 1246 -1261 23 33 0 0 chr13 96282918 96282948 -23461950 + AT_rich Low_complexity Low_complexity 1 30 0 1719 159 10 3 chr13 96283939 96284235 -23460663 + AluSx SINE Alu 1 298 -14 189 147 0 0 chr13 96284326 96284360 -23460538 + (TAA)n Simple_repeat Simple_repeat 2 35 0 864 308 101 11 chr13 96284420 96284885 -23460013 + LTR33 LTR ERVL 10 516 -5 915 184 0 6 chr13 96284965 96285128 -23459770 - FRAM SINE Alu -14 162 1 905 140 0 0 chr13 96285446 96285582 -23459316 + AluSg/x SINE Alu 164 299 -13 1415 88 15 34 chr13 96286248 96286478 -23458420 - AluSq SINE Alu 0 309 84 1985 125 17 0 chr13 96286480 96286769 -23458129 - AluSx SINE Alu -18 294 1 1176 271 128 11 chr13 96286890 96287336 -23457562 - LTR40a LTR ERVL -5 514 17 23 0 0 0 chr13 96289420 96289443 -23455455 + AT_rich Low_complexity Low_complexity 1 23 0 960 83 0 0 chr13 96290664 96290797 -23454101 - AluY SINE Alu -1 310 178 249 281 12 12 chr13 96292560 96292642 -23452256 - MIR SINE MIR -8 254 173 32 0 0 0 chr13 96292702 96292734 -23452164 + AT_rich Low_complexity Low_complexity 1 32 0 964 56 32 0 chr13 96292972 96293097 -23451801 + L1PA7 LINE L1 6019 6147 -7 23 0 0 0 chr13 96293513 96293536 -23451362 + AT_rich Low_complexity Low_complexity 1 23 0 324 211 127 0 chr13 96293984 96294055 -23450843 + MADE1 DNA Mariner 1 80 0 1305 169 132 25 chr13 96294094 96294419 -23450479 + MER46B DNA MER2_type 2 236 0 306 164 0 0 chr13 96294863 96294918 -23449980 + (TA)n Simple_repeat Simple_repeat 2 56 0 1165 134 35 69 chr13 96295094 96295278 -23449620 - THE1B LTR MaLR -12 352 122 2251 108 0 6 chr13 96295278 96295592 -23449306 - AluSx SINE Alu 0 312 1 1165 134 35 69 chr13 96295592 96295709 -23449189 - THE1B LTR MaLR -242 122 3 233 287 43 11 chr13 96296478 96296572 -23448326 - L1M4 LINE L1 -2322 3824 3728 476 188 11 3 chr13 96296931 96297039 -23447859 - L1MA9 LINE L1 -75 6093 5987 37 86 0 0 chr13 96297342 96297435 -23447463 + AT_rich Low_complexity Low_complexity 1 93 0 1425 208 56 56 chr13 96297677 96298072 -23446826 - MSTD LTR MaLR 0 396 2 296 302 83 10 chr13 96299090 96299186 -23445712 + L2 LINE L2 3165 3267 -5 572 296 98 48 chr13 96299207 96299603 -23445295 + L2 LINE L2 2305 2720 -594 2227 252 105 30 chr13 96299643 96300549 -23444349 + L1MEc LINE L1 302 1275 -5121 23 0 0 0 chr13 96300694 96300717 -23444181 + AT_rich Low_complexity Low_complexity 1 23 0 275 85 21 0 chr13 96302372 96302419 -23442479 + (TC)n Simple_repeat Simple_repeat 1 48 0 2753 252 28 70 chr13 96302492 96302656 -23442242 + L1MC4 LINE L1 6614 6783 -1259 2299 57 0 3 chr13 96302656 96302959 -23441939 - AluY SINE Alu 0 302 1 2753 252 28 70 chr13 96302959 96303892 -23441006 + L1MC4 LINE L1 6783 7666 -376 2619 28 0 0 chr13 96305403 96305726 -23439172 - L1P LINE L1 -772 5374 5052 5066 11 0 0 chr13 96305726 96306287 -23438611 + L1PA2 LINE L1 5581 6152 -3 21 36 0 0 chr13 96307084 96307112 -23437786 + AT_rich Low_complexity Low_complexity 1 28 0 431 333 39 0 chr13 96307404 96307584 -23437314 - L1ME1 LINE L1 -5 6161 5975 1444 105 5 0 chr13 96307584 96307775 -23437123 - AluSq SINE Alu -52 261 70 3451 224 36 26 chr13 96307793 96309217 -23435681 - L1ME1 LINE L1 -207 5959 4356 222 225 0 0 chr13 96309246 96309326 -23435572 + (TA)n Simple_repeat Simple_repeat 1 80 0 333 0 0 0 chr13 96309330 96309367 -23435531 + (TG)n Simple_repeat Simple_repeat 2 38 0 896 267 95 28 chr13 96309367 96309757 -23435141 - L1ME1 LINE L1 -1833 4313 3898 302 402 96 23 chr13 96309762 96310063 -23434835 + L1MEd LINE L1 242 564 -5555 283 220 55 44 chr13 96310230 96310321 -23434577 - L2 LINE L2 -1 3312 3221 21 0 0 0 chr13 96312872 96312893 -23432005 + AT_rich Low_complexity Low_complexity 1 21 0 2156 91 62 0 chr13 96313206 96313514 -23431384 - L1PA8A LINE L1 -13 6118 5792 651 98 0 62 chr13 96313517 96313629 -23431269 + MLT2A1 LTR ERVL 340 444 0 3316 159 17 3 chr13 96313632 96314218 -23430680 + L1MC3 LINE L1 7184 7777 -8 233 268 19 148 chr13 96315164 96315373 -23429525 + L2 LINE L2 2582 2763 -551 219 156 0 22 chr13 96315378 96315423 -23429475 + (TG)n Simple_repeat Simple_repeat 1 44 0 585 337 76 52 chr13 96315435 96315856 -23429042 - LTR16C LTR ERVL -58 433 3 299 323 10 0 chr13 96315908 96316004 -23428894 - LTR33 LTR ERVL 0 521 425 402 305 23 0 chr13 96316137 96316265 -23428633 - LTR33 LTR ERVL -270 251 121 390 286 8 25 chr13 96316356 96316475 -23428423 + L2 LINE L2 3190 3306 -7 1652 259 36 9 chr13 96317176 96317616 -23427282 + MLT1C LTR MaLR 16 467 0 315 0 0 0 chr13 96317697 96317732 -23427166 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2111 116 0 23 chr13 96317734 96318037 -23426861 - AluSx SINE Alu -13 299 4 339 327 39 10 chr13 96318308 96318412 -23426486 - L2 LINE L2 -12 3260 3154 1175 164 23 68 chr13 96319114 96319377 -23425521 + AluJo SINE Alu 44 294 -18 29 70 0 0 chr13 96319601 96319658 -23425240 + AT_rich Low_complexity Low_complexity 1 57 0 231 61 0 0 chr13 96319971 96320004 -23424894 + (T)n Simple_repeat Simple_repeat 1 33 0 290 128 0 0 chr13 96321271 96321318 -23423580 - L1MA9 LINE L1 0 6312 6266 2855 3 0 0 chr13 96321319 96321627 -23423271 - AluYa5 SINE Alu -3 308 1 647 226 50 0 chr13 96321628 96321809 -23423089 - L1 LINE L1 -782 5364 5175 329 249 70 27 chr13 96322524 96322709 -23422189 - L1ME3A LINE L1 -234 5936 5744 347 345 57 0 chr13 96322814 96322991 -23421907 - L1MC4 LINE L1 -1339 6703 6517 573 238 0 30 chr13 96323163 96323327 -23421571 + MER3 DNA MER1_type 9 167 -42 1631 174 25 0 chr13 96323428 96323710 -23421188 + AluJb SINE Alu 11 299 -13 529 290 177 33 chr13 96323835 96324225 -23420673 - L1ME4a LINE L1 -157 5964 5519 568 319 44 44 chr13 96325027 96325376 -23419522 + LTR16A1 LTR ERVL 120 483 -8 896 103 0 0 chr13 96325860 96325976 -23418922 + AluSg SINE Alu 5 120 -190 620 80 4 62 chr13 96325976 96326209 -23418689 + (TA)n Simple_repeat Simple_repeat 1 219 0 339 253 0 22 chr13 96326215 96326306 -23418592 - L1MC4 LINE L1 -1339 6703 6615 1278 102 0 0 chr13 96326315 96326482 -23418416 + AluSg SINE Alu 125 291 -19 418 312 139 10 chr13 96326988 96327381 -23417517 + L1ME4a LINE L1 5382 5828 -293 258 254 0 34 chr13 96327794 96327853 -23417045 - MIR SINE MIR -133 75 19 322 374 58 55 chr13 96332117 96332534 -23412364 + L2 LINE L2 2855 3272 0 5277 102 1 1 chr13 96334696 96335454 -23409444 + L1PA13 LINE L1 5405 6162 -1 1835 116 72 14 chr13 96335670 96335963 -23408935 - AluSg SINE Alu 0 310 1 186 43 0 0 chr13 96336011 96336034 -23408864 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 23 33 0 0 chr13 96336361 96336391 -23408507 + AT_rich Low_complexity Low_complexity 1 30 0 1013 298 129 52 chr13 96340523 96341585 -23403313 - L2 LINE L2 0 3313 2183 274 315 0 9 chr13 96342218 96342326 -23402572 + CT-rich Low_complexity Low_complexity 1 107 0 216 318 0 0 chr13 96343305 96343368 -23401530 + L2 LINE L2 2271 2333 -981 189 74 0 0 chr13 96344490 96344517 -23400381 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 27 81 0 0 chr13 96346070 96346132 -23398766 + AT_rich Low_complexity Low_complexity 1 62 0 4415 188 19 39 chr13 96346237 96346756 -23398142 - L1MC2 LINE L1 -21 6323 5830 2274 121 0 0 chr13 96346756 96347063 -23397835 - AluSg SINE Alu -3 307 1 4415 188 19 39 chr13 96347063 96347523 -23397375 - L1MC2 LINE L1 -514 5830 5363 1851 147 0 14 chr13 96347582 96347889 -23397009 - AluSx SINE Alu 0 303 1 43059 31 21 1 chr13 96348056 96354087 -23390811 - L1HS LINE L1 0 6155 1 22 35 0 0 chr13 96354149 96354178 -23390720 + AT_rich Low_complexity Low_complexity 1 29 0 3830 148 5 0 chr13 96354366 96354986 -23389912 - L1PA16 LINE L1 -5 6161 5539 1715 20 0 10 chr13 96354987 96355190 -23389708 + L1PA3 LINE L1 5955 6155 0 1277 145 34 77 chr13 96355199 96355360 -23389538 - L1PA16 LINE L1 -627 5539 5373 1657 164 66 38 chr13 96355360 96355725 -23389173 + THE1C LTR MaLR 1 375 0 8448 153 26 38 chr13 96355727 96357324 -23387574 + THE1C-int LTR MaLR 3 1580 0 1298 170 102 40 chr13 96357324 96357677 -23387221 + THE1C LTR MaLR 1 375 0 1277 145 34 77 chr13 96357677 96357836 -23387062 - L1PA16 LINE L1 -792 5374 5223 7836 88 6 2 chr13 96358197 96360080 -23384818 - L1PA7 LINE L1 0 6154 4258 2019 58 0 4 chr13 96360180 96360439 -23384459 - L1P2 LINE L1 -483 5672 5415 * 11053 100 9 11 chr13 96360427 96362101 -23382797 - L1PA7 LINE L1 -2450 3696 2027 232 239 37 45 chr13 96362093 96362227 -23382671 - L1M4 LINE L1 -2188 3958 3826 * 32 0 0 0 chr13 96362709 96362741 -23382157 + AT_rich Low_complexity Low_complexity 1 32 0 236 242 0 30 chr13 96363303 96363369 -23381529 + HAL1 LINE L1 149 212 -2295 183 211 0 92 chr13 96363470 96363546 -23381352 - MIR3 SINE MIR -17 191 123 1875 275 112 29 chr13 96363611 96364494 -23380404 + L2 LINE L2 2015 2970 -344 398 293 143 0 chr13 96364953 96365093 -23379805 + L2 LINE L2 3127 3286 -27 373 281 24 54 chr13 96365123 96365290 -23379608 + HAL1 LINE L1 2193 2354 -153 70 75 0 0 chr13 96365424 96365571 -23379327 + AT_rich Low_complexity Low_complexity 1 147 0 182 277 77 15 chr13 96365705 96365770 -23379128 - L3b LINE CR1 -71 1512 1444 373 243 0 13 chr13 96366642 96366794 -23378104 + (TA)n Simple_repeat Simple_repeat 1 150 0 1043 201 55 17 chr13 96367255 96367544 -23377354 + MER33 DNA MER1_type 3 302 -22 1320 213 7 18 chr13 96367664 96367946 -23376952 + AluJo SINE Alu 1 279 -33 27 29 0 0 chr13 96367978 96368012 -23376886 + AT_rich Low_complexity Low_complexity 1 34 0 1061 258 34 34 chr13 96368663 96368989 -23375909 + MLT1A2 LTR MaLR 1 326 -48 386 229 0 0 chr13 96368988 96369071 -23375827 + MLT1A2 LTR MaLR 285 367 -7 * 1141 136 11 0 chr13 96370731 96370908 -23373990 - AluSg/x SINE Alu 0 310 132 1875 125 23 39 chr13 96370908 96371213 -23373685 - AluSq SINE Alu -13 300 1 371 305 35 25 chr13 96371437 96371634 -23373264 - MLT1H LTR MaLR -301 248 50 341 342 16 57 chr13 96372460 96372653 -23372245 - MER5A DNA MER1_type -4 185 1 346 133 0 40 chr13 96373081 96373156 -23371742 + L1MC/D LINE L1 5411 5482 -877 594 214 56 21 chr13 96373206 96373394 -23371504 + L1MC/D LINE L1 5446 5631 -535 2172 116 0 0 chr13 96374224 96374518 -23370380 + AluSg1 SINE Alu 1 294 -15 440 333 11 33 chr13 96376051 96376234 -23368664 - MIR SINE MIR -61 201 23 4272 137 34 15 chr13 96376985 96377828 -23367070 + L1MA3 LINE L1 5203 6109 -196 1361 117 4 85 chr13 96377828 96378076 -23366822 + AluSg/x SINE Alu 74 301 -11 886 113 56 0 chr13 96378084 96378244 -23366654 + L1MA3 LINE L1 6135 6303 -2 246 267 13 40 chr13 96381527 96381602 -23363296 - Charlie4 DNA MER1_type -1 1960 1888 256 305 156 35 chr13 96382179 96382320 -23362578 + MIR SINE MIR 28 185 -77 287 113 132 0 chr13 96383567 96383620 -23361278 - L1M3 LINE L1 -564 5607 5548 * 2322 156 19 12 chr13 96383617 96384033 -23360865 + L1MB1 LINE L1 5736 6154 -35 366 23 0 0 chr13 96384033 96384076 -23360822 + (CA)n Simple_repeat Simple_repeat 2 44 0 833 233 6 0 chr13 96385547 96385719 -23359179 - FRAM SINE Alu -3 173 1 294 354 13 57 chr13 96387968 96388126 -23356772 - MIR3 SINE MIR -25 183 33 188 303 42 59 chr13 96388263 96388382 -23356516 + L2 LINE L2 2946 3062 -251 991 197 144 14 chr13 96388466 96388750 -23356148 + MER33 DNA MER1_type 4 324 0 422 146 81 89 chr13 96389356 96389479 -23355419 - L1MC2 LINE L1 -11 6333 6212 273 167 61 15 chr13 96389482 96389548 -23355350 + MSTC LTR MaLR 336 404 -24 672 219 17 104 chr13 96389548 96389845 -23355053 - L1M4 LINE L1 -1003 5143 4873 301 333 95 56 chr13 96390444 96390855 -23354043 + HAL1 LINE L1 1054 1480 -1027 311 318 68 8 chr13 96393395 96393527 -23351371 + MIR3 SINE MIR 62 201 -7 274 339 40 16 chr13 96394675 96394799 -23350099 + MIR SINE MIR 21 147 -115 367 358 80 15 chr13 96394942 96395143 -23349755 + MIR SINE MIR 32 245 -17 183 306 36 104 chr13 96395261 96395483 -23349415 + L2 LINE L2 2392 2598 -716 232 306 38 125 chr13 96395729 96396154 -23348744 + L2 LINE L2 2926 3313 0 187 357 139 23 chr13 96396401 96396530 -23348368 + L2 LINE L2 3129 3272 0 2198 119 10 0 chr13 96397034 96397344 -23347554 - AluSp SINE Alu 0 313 1 241 229 181 42 chr13 96398070 96398214 -23346684 - MER103 DNA DNA -2 164 1 510 295 195 4 chr13 96398740 96399001 -23345897 + L2 LINE L2 1399 1709 -1605 217 205 0 0 chr13 96399002 96399041 -23345857 + GA-rich Low_complexity Low_complexity 2 40 0 284 286 79 128 chr13 96399052 96399279 -23345619 + L2 LINE L2 1701 1916 -1398 824 329 44 48 chr13 96399297 96399798 -23345100 + L2 LINE L2 2814 3312 -1 301 208 26 0 chr13 96400135 96400212 -23344686 + L1MCa LINE L1 1985 2063 -4363 237 132 0 0 chr13 96400214 96400252 -23344646 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 1541 167 26 123 chr13 96400357 96400787 -23344111 + MSTC LTR MaLR 1 388 -40 12839 37 3 2 chr13 96400867 96403200 -23341698 - L1PA5 LINE L1 0 6154 3818 325 316 87 64 chr13 96403214 96403571 -23341327 - L2 LINE L2 -570 2744 2380 23 0 0 0 chr13 96405023 96405046 -23339852 + AT_rich Low_complexity Low_complexity 1 23 0 1792 185 48 0 chr13 96405594 96405924 -23338974 - MER7A DNA MER2_type 0 346 3 260 73 73 0 chr13 96406013 96406054 -23338844 - MIR SINE MIR -98 164 121 1990 70 48 11 chr13 96407085 96407399 -23337499 - AluSg1 SINE Alu 0 324 1 288 0 0 0 chr13 96410534 96410566 -23334332 + (A)n Simple_repeat Simple_repeat 1 32 0 1530 42 0 0 chr13 96410799 96410990 -23333908 + L1PA5 LINE L1 5964 6154 0 674 198 6 43 chr13 96411415 96411577 -23333321 - MER20 DNA MER1_type -63 156 1 42376 36 24 1 chr13 96411706 96417719 -23327179 + L1PA3 LINE L1 1 6155 0 8418 211 62 23 chr13 96417992 96420349 -23324549 - L1 LINE L1 -1025 5823 3376 1157 214 13 49 chr13 96420367 96420398 -23324500 - L1 LINE L1 -3617 3231 3200 836 226 6 6 chr13 96420398 96420562 -23324336 - FAM SINE Alu -11 164 1 1157 214 13 49 chr13 96420562 96421069 -23323829 - L1 LINE L1 -3648 3200 2725 1022 250 98 23 chr13 96421066 96421676 -23323222 + L1M1 LINE L1 2780 3441 -4124 * 4707 259 50 51 chr13 96421677 96424063 -23320835 - L1 LINE L1 -4457 2392 61 199 333 67 9 chr13 96424687 96424792 -23320106 + MIR SINE MIR 20 130 -132 692 273 11 0 chr13 96424814 96425001 -23319897 + MER5A DNA MER1_type 1 189 0 1444 184 102 12 chr13 96425006 96425348 -23319550 - MER58D DNA MER1_type -4 382 10 182 36 0 36 chr13 96425509 96425537 -23319361 + (CCCA)n Simple_repeat Simple_repeat 4 30 0 2189 102 14 0 chr13 96426424 96426719 -23318179 + AluSx SINE Alu 5 303 -9 343 279 180 17 chr13 96426990 96427162 -23317736 - L1ME3 LINE L1 -50 6112 5913 593 141 0 147 chr13 96428677 96428833 -23316065 + FLAM_C SINE Alu 1 133 -10 1795 178 0 3 chr13 96429362 96429666 -23315232 + AluJb SINE Alu 1 303 -9 2229 234 177 21 chr13 96429739 96430492 -23314406 - L1MDa LINE L1 -5244 1296 427 2054 116 0 10 chr13 96430581 96430873 -23314025 - AluSg1 SINE Alu -20 289 1 1385 308 99 23 chr13 96430912 96432018 -23312880 + L2 LINE L2 2108 3309 -4 27 0 0 0 chr13 96432124 96432151 -23312747 + AT_rich Low_complexity Low_complexity 1 27 0 2354 104 58 6 chr13 96433022 96433368 -23311530 - THE1B LTR MaLR 0 364 1 189 330 104 0 chr13 96435118 96435224 -23309674 - L2 LINE L2 -1 3312 3196 1345 235 100 32 chr13 96435226 96435782 -23309116 - MLT1D LTR MaLR 0 505 14 1049 111 7 0 chr13 96436127 96436280 -23308618 + AluJb SINE Alu 156 309 -3 2127 118 0 20 chr13 96436280 96436584 -23308314 + AluSg SINE Alu 1 298 -12 2015 99 50 0 chr13 96436584 96436866 -23308032 + AluSc SINE Alu 1 297 -12 25 31 0 0 chr13 96437445 96437477 -23307421 + AT_rich Low_complexity Low_complexity 1 32 0 237 211 0 0 chr13 96438196 96438248 -23306650 + (CA)n Simple_repeat Simple_repeat 2 53 0 2196 127 67 14 chr13 96438256 96438602 -23306296 - THE1B LTR MaLR 0 364 1 575 228 0 8 chr13 96438759 96438886 -23306012 - FLAM_C SINE Alu -17 126 1 378 182 0 33 chr13 96439485 96439666 -23305232 + (TTTAA)n Simple_repeat Simple_repeat 4 178 0 353 165 38 23 chr13 96441262 96441395 -23303503 + GA-rich Low_complexity Low_complexity 2 136 0 244 379 0 21 chr13 96441694 96441834 -23303064 - L2 LINE L2 -264 3049 2913 2146 126 3 0 chr13 96444224 96444533 -23300365 + AluSx SINE Alu 1 310 -2 709 268 30 53 chr13 96444931 96445196 -23299702 + MIR SINE MIR 4 262 0 30 0 0 0 chr13 96445890 96445920 -23298978 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 96446652 96446681 -23298217 + AT_rich Low_complexity Low_complexity 1 29 0 1473 150 6 139 chr13 96446784 96447123 -23297775 + AluJo SINE Alu 6 299 -13 344 319 154 18 chr13 96447469 96447748 -23297150 + L1M4 LINE L1 2568 2884 -3262 385 322 56 0 chr13 96447978 96448121 -23296777 - LTR16B LTR ERVL -88 376 226 407 353 12 37 chr13 96448205 96448449 -23296449 - LTR16B LTR ERVL -176 288 51 482 248 148 34 chr13 96448750 96448899 -23295999 - MIR SINE MIR -34 228 63 1968 165 51 32 chr13 96448965 96449499 -23295399 - MLT2A2 LTR ERVL -8 546 1 209 163 20 0 chr13 96449880 96449929 -23294969 + GA-rich Low_complexity Low_complexity 2 51 0 22 35 0 0 chr13 96450115 96450144 -23294754 + AT_rich Low_complexity Low_complexity 1 29 0 763 270 25 17 chr13 96450690 96450931 -23293967 + MER97b DNA MER1_type? 12 254 -799 552 96 0 0 chr13 96450954 96451037 -23293861 - L1MB8 LINE L1 0 6178 6096 344 122 22 56 chr13 96451051 96451141 -23293757 - L1MB3 LINE L1 0 6183 6097 26959 75 17 0 chr13 96451296 96455742 -23289156 + L1PA6 LINE L1 1646 6148 -6 22 35 0 0 chr13 96455984 96456013 -23288885 + AT_rich Low_complexity Low_complexity 1 29 0 272 243 43 0 chr13 96456609 96456679 -23288219 + MIR3 SINE MIR 125 197 -11 186 416 10 0 chr13 96456795 96456896 -23288002 + MIR SINE MIR 64 165 -97 691 67 45 45 chr13 96456993 96457171 -23287727 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 25 31 0 0 chr13 96458527 96458559 -23286339 + AT_rich Low_complexity Low_complexity 1 32 0 236 29 0 29 chr13 96460337 96460371 -23284527 + (TG)n Simple_repeat Simple_repeat 2 34 0 234 213 0 16 chr13 96460420 96460481 -23284417 + (TA)n Simple_repeat Simple_repeat 1 60 0 6060 140 89 18 chr13 96460481 96461611 -23283287 + Tigger3b DNA MER2_type 20 1230 -1 369 114 57 68 chr13 96461657 96461745 -23283153 - L1PA6 LINE L1 -10 6144 6058 1585 70 62 62 chr13 96461745 96462017 -23282881 + L1PA4 LINE L1 5711 5982 -173 192 325 156 26 chr13 96462642 96462944 -23281954 - L3b LINE CR1 -114 1469 1129 13400 148 27 21 chr13 96463566 96464675 -23280223 - Tigger1 DNA MER2_type 0 2418 1317 1605 199 0 3 chr13 96464675 96464961 -23279937 - AluJb SINE Alu -23 289 5 13400 148 27 21 chr13 96464961 96466169 -23278729 - Tigger1 DNA MER2_type -1101 1317 87 224 358 58 36 chr13 96466851 96466988 -23277910 + MIR3 SINE MIR 29 168 -40 243 300 129 0 chr13 96467298 96467368 -23277530 - MIR SINE MIR -152 110 32 414 108 0 0 chr13 96467512 96467577 -23277321 - Tigger1 DNA MER2_type -2169 249 185 22 35 0 0 chr13 96468202 96468231 -23276667 + AT_rich Low_complexity Low_complexity 1 29 0 2356 171 119 30 chr13 96468251 96468420 -23276478 - L1MB4 LINE L1 0 6180 6012 3272 237 122 16 chr13 96468420 96468551 -23276347 - L1MD2 LINE L1 -351 6008 5892 2156 123 0 0 chr13 96468551 96468851 -23276047 - AluY SINE Alu -11 300 1 3272 237 122 16 chr13 96468851 96470231 -23274667 - L1MD2 LINE L1 -467 5892 4319 1013 226 221 5 chr13 96470226 96470620 -23274278 + L1MD2 LINE L1 3844 4322 -1824 * 3375 57 41 0 chr13 96471188 96471628 -23273270 - L1PA7 LINE L1 -11 6143 5686 811 40 0 0 chr13 96471628 96471727 -23273171 + L1PA7 LINE L1 5576 5674 -498 419 325 99 23 chr13 96472610 96472887 -23272011 + L1MC4a LINE L1 5579 5890 -1918 2914 209 15 39 chr13 96472887 96473556 -23271342 - MER82 DNA MER2_type 0 653 1 419 325 99 23 chr13 96473556 96473632 -23271266 + L1MC4a LINE L1 5890 5959 -1849 183 371 80 26 chr13 96475270 96475332 -23269566 + MIR SINE MIR 15 72 -190 1869 221 59 27 chr13 96475332 96475820 -23269078 - MLT1D LTR MaLR 0 505 2 183 371 80 26 chr13 96475820 96475908 -23268990 + MIR SINE MIR 72 173 -89 276 270 14 0 chr13 96475973 96476047 -23268851 - MER89-int LTR ERV1 -5837 964 890 809 262 41 66 chr13 96476891 96477254 -23267644 - MER110 LTR ERV1 -36 455 102 2126 131 39 31 chr13 96477443 96477802 -23267096 + THE1B LTR MaLR 1 362 -2 463 351 39 15 chr13 96477829 96478034 -23266864 + MLT1J LTR MaLR 154 363 -148 944 291 60 49 chr13 96478214 96478430 -23266468 + L2 LINE L2 2490 2702 -611 3417 78 7 0 chr13 96478430 96478879 -23266019 - MLT2A2 LTR ERVL -1 452 1 944 291 60 49 chr13 96478879 96478959 -23265939 + L2 LINE L2 2702 2780 -533 2144 190 21 30 chr13 96478959 96479391 -23265507 + MSTC LTR MaLR 1 428 0 944 291 60 49 chr13 96479391 96479909 -23264989 + L2 LINE L2 2780 3313 0 727 191 65 55 chr13 96479990 96480189 -23264709 - MLT1A1 LTR MaLR -150 215 15 2491 65 0 0 chr13 96480598 96480904 -23263994 - AluY SINE Alu -5 306 1 1424 184 24 27 chr13 96481257 96481359 -23263539 + AluJo SINE Alu 1 102 -210 1783 149 95 54 chr13 96481359 96481726 -23263172 + MSTB LTR MaLR 1 388 -38 204 40 0 0 chr13 96481736 96481761 -23263137 + (TGGGGG)n Simple_repeat Simple_repeat 2 26 0 2141 122 0 10 chr13 96481761 96482062 -23262836 - AluSx SINE Alu -12 300 1 1783 149 95 54 chr13 96482062 96482103 -23262795 + MSTB LTR MaLR 388 426 0 1424 184 24 27 chr13 96482103 96482294 -23262604 + AluJo SINE Alu 102 293 -19 21 0 0 0 chr13 96482383 96482404 -23262494 + AT_rich Low_complexity Low_complexity 1 21 0 724 208 0 0 chr13 96482514 96482644 -23262254 - FLAM_C SINE Alu -3 130 1 242 200 95 67 chr13 96482762 96482867 -23262031 - MIR SINE MIR -141 121 14 41 66 0 0 chr13 96483331 96483407 -23261491 + AT_rich Low_complexity Low_complexity 1 76 0 25 51 0 0 chr13 96483507 96483546 -23261352 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr13 96485448 96485477 -23259421 + AT_rich Low_complexity Low_complexity 1 29 0 3824 231 67 56 chr13 96485510 96485626 -23259272 + L1M4 LINE L1 37 150 -6392 1649 152 72 39 chr13 96485626 96485989 -23258909 - THE1C LTR MaLR 0 375 1 3824 231 67 56 chr13 96485989 96487060 -23257838 + L1M4 LINE L1 150 1238 -5304 496 201 7 97 chr13 96487073 96487217 -23257681 + FLAM_C SINE Alu 1 131 -2 1982 165 83 10 chr13 96487251 96487646 -23257252 - MSTB LTR MaLR 0 426 3 7955 194 53 9 chr13 96487653 96488626 -23256272 - MSTB-int LTR MaLR -5 1646 578 1909 144 54 25 chr13 96488626 96488980 -23255918 + THE1B LTR MaLR 1 364 0 7955 194 53 9 chr13 96488980 96489584 -23255314 - MSTB-int LTR MaLR -1073 578 1 1327 169 74 13 chr13 96489584 96489890 -23255008 - MSTB1 LTR MaLR 0 432 107 1419 291 66 41 chr13 96489890 96490719 -23254179 + L1M4 LINE L1 1299 2148 -4498 543 264 101 20 chr13 96490753 96491049 -23253849 + L1M4 LINE L1 2287 2606 -4040 528 311 36 10 chr13 96492200 96492393 -23252505 - MLT1J LTR MaLR -313 198 1 22 0 0 0 chr13 96493770 96493792 -23251106 + AT_rich Low_complexity Low_complexity 1 22 0 1927 141 3 13 chr13 96494016 96494314 -23250584 + AluSx SINE Alu 1 295 -17 227 247 14 27 chr13 96495304 96495377 -23249521 + L1MEd LINE L1 263 334 -6038 1925 145 3 22 chr13 96495377 96495694 -23249204 + AluSx SINE Alu 1 311 -1 413 321 116 70 chr13 96495965 96496336 -23248562 + L1MEd LINE L1 606 993 -5379 21 0 0 0 chr13 96496473 96496494 -23248404 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 96496501 96496521 -23248377 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 397 273 63 30 chr13 96496719 96497089 -23247809 + L1MEd LINE L1 1282 1816 -4747 517 316 102 32 chr13 96497551 96497893 -23247005 - LTR33 LTR ERVL -155 366 1 256 282 106 55 chr13 96498506 96498854 -23246044 + L1MEd LINE L1 2587 2952 -3430 382 294 107 30 chr13 96499517 96499891 -23245007 + L1MEc LINE L1 1001 1345 -5051 2729 93 8 11 chr13 96499891 96500267 -23244631 + THE1C LTR MaLR 1 375 0 382 294 107 30 chr13 96500267 96500657 -23244241 + L1MEc LINE L1 1345 1824 -4572 44 20 0 0 chr13 96500751 96500802 -23244096 + AT_rich Low_complexity Low_complexity 1 51 0 794 252 118 62 chr13 96500934 96501721 -23243177 + L1M4 LINE L1 4490 5320 -826 1542 172 10 33 chr13 96502878 96503180 -23241718 + AluJo SINE Alu 4 298 -14 2000 143 71 22 chr13 96503338 96503744 -23241154 - MSTB LTR MaLR 0 426 1 25 0 0 0 chr13 96504283 96504308 -23240590 + AT_rich Low_complexity Low_complexity 1 25 0 1458 188 70 3 chr13 96504331 96504688 -23240210 + Charlie5 DNA MER1_type 2244 2624 0 304 261 160 6 chr13 96504689 96504849 -23240049 + MIR SINE MIR 18 199 -62 282 280 43 21 chr13 96506412 96506505 -23238393 - MIR SINE MIR -67 195 101 1912 163 0 0 chr13 96506524 96506824 -23238074 + AluJo SINE Alu 1 300 -12 1601 183 14 10 chr13 96506829 96507118 -23237780 + AluJo SINE Alu 1 290 -22 603 303 51 25 chr13 96507159 96507433 -23237465 - MLT1I LTR MaLR -128 281 1 298 289 46 33 chr13 96509409 96509561 -23235337 - MIR SINE MIR -26 236 83 24 0 0 0 chr13 96509573 96509597 -23235301 + AT_rich Low_complexity Low_complexity 1 24 0 373 62 25 49 chr13 96510908 96510989 -23233909 + (TAGA)n Simple_repeat Simple_repeat 1 79 0 429 294 28 57 chr13 96511602 96511779 -23233119 - MER5A DNA MER1_type -1 188 17 1352 173 38 70 chr13 96512134 96512257 -23232641 + AluJo SINE Alu 1 126 -186 216 0 0 0 chr13 96512257 96512281 -23232617 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1352 173 38 70 chr13 96512281 96512470 -23232428 + AluJo SINE Alu 126 303 -9 1575 157 75 46 chr13 96513048 96513162 -23231736 + MSTA LTR MaLR 14 123 -241 5168 66 40 7 chr13 96513162 96513861 -23231037 + LTR30 LTR ERV1 1 722 0 1575 157 75 46 chr13 96513861 96514053 -23230845 + MSTA LTR MaLR 123 328 -36 1833 121 60 0 chr13 96514053 96514382 -23230516 - AluSx SINE Alu 0 346 2 1575 157 75 46 chr13 96514382 96514421 -23230477 + MSTA LTR MaLR 328 364 0 491 342 89 34 chr13 96515412 96515792 -23229106 + LTR16C LTR ERVL 91 491 0 936 257 42 0 chr13 96515827 96516041 -23228857 - MER58A DNA MER1_type 0 224 2 246 236 18 0 chr13 96517006 96517061 -23227837 + MLT1I LTR MaLR 352 407 -2 260 343 30 0 chr13 96517064 96517163 -23227735 - MIR SINE MIR -152 110 9 641 154 0 26 chr13 96519982 96520099 -23224799 + FLAM_C SINE Alu 30 143 0 846 210 0 37 chr13 96520118 96520319 -23224579 + AluJo SINE Alu 127 321 0 183 325 158 0 chr13 96520911 96521025 -23223873 + MIR SINE MIR 124 255 -7 602 225 0 0 chr13 96521207 96521327 -23223571 + FLAM_C SINE Alu 1 120 -23 272 87 0 43 chr13 96521715 96521761 -23223137 + LTR14B LTR ERVK 3 46 -562 * 2032 111 114 35 chr13 96521749 96522118 -23222780 + LTR14B LTR ERVK 211 608 0 5687 64 29 8 chr13 96522118 96522870 -23222028 + HERVK14 LTR ERVK 1 768 -5177 9257 60 8 15 chr13 96523133 96524327 -23220571 + HERV17 LTR ERV1 830 2014 -6612 * 10771 52 10 5 chr13 96524312 96525630 -23219268 + HERV17 LTR ERV1 2430 3754 -4872 1237 7 28 0 chr13 96525609 96525753 -23219145 + HERV17 LTR ERV1 5405 5552 -3074 * 303 62 0 0 chr13 96525754 96525802 -23219096 + HERV17 LTR ERV1 434 481 -8145 * 5314 63 107 90 chr13 96525789 96526497 -23218401 + HERVK14 LTR ERVK 5038 5813 -132 348 177 0 16 chr13 96526497 96526559 -23218339 + MER41C LTR ERV1 1 61 -493 5314 63 107 90 chr13 96526559 96526695 -23218203 + HERVK14 LTR ERVK 5813 5945 0 303 0 22 43 chr13 96526698 96526744 -23218154 + LTR14B LTR ERVK 1 45 -563 * 2027 93 129 38 chr13 96526733 96527098 -23217800 + LTR14B LTR ERVK 211 608 0 491 252 68 77 chr13 96527483 96527884 -23217014 + MLT1H LTR MaLR 83 542 -7 444 198 16 41 chr13 96529435 96529556 -23215342 - L1PA16 LINE L1 0 6166 6049 2007 169 96 147 chr13 96529561 96530063 -23214835 - L1PA15-16 LINE L1 -3605 3244 2718 987 105 0 15 chr13 96530063 96530196 -23214702 - AluSq/x SINE Alu -182 131 1 2007 169 96 147 chr13 96530196 96530699 -23214199 - L1PA15-16 LINE L1 -4131 2718 2161 1570 176 18 17 chr13 96531039 96531429 -23213469 + L1MC/D LINE L1 5159 5548 -743 2133 91 4 4 chr13 96532192 96532468 -23212430 + AluSx SINE Alu 7 282 -30 2283 87 0 3 chr13 96532522 96532810 -23212088 + AluY SINE Alu 1 287 -24 2194 94 6 41 chr13 96532834 96533154 -23211744 + AluSq SINE Alu 5 313 0 312 263 34 0 chr13 96533522 96533640 -23211258 + L1MC4 LINE L1 7919 8040 -2 201 271 75 38 chr13 96533653 96533786 -23211112 - L2 LINE L2 -1480 1834 1697 2043 156 0 0 chr13 96533815 96534123 -23210775 + AluSx SINE Alu 3 310 -2 4520 189 40 10 chr13 96534270 96535589 -23209309 + L1MC1 LINE L1 4756 6116 -217 750 208 31 40 chr13 96535598 96535824 -23209074 - PABL_B LTR ERV1 -7 660 437 1125 158 9 35 chr13 96536308 96536536 -23208362 + L1MC1 LINE L1 6111 6332 -1 2393 87 0 3 chr13 96536640 96536939 -23207959 - AluSx SINE Alu -10 302 5 691 103 0 10 chr13 96537975 96538072 -23206826 + FLAM_C SINE Alu 22 117 -26 313 227 0 82 chr13 96539180 96539277 -23205621 - MIR3 SINE MIR -28 180 92 2362 95 0 0 chr13 96539311 96539615 -23205283 - AluSg SINE Alu -6 304 1 230 343 131 0 chr13 96539845 96539944 -23204954 + L2 LINE L2 3158 3269 -3 2383 175 16 12 chr13 96541706 96542129 -23202769 + MSTB LTR MaLR 1 425 -1 191 355 0 89 chr13 96544239 96544363 -23200535 - MIR3 SINE MIR -82 126 14 13677 29 0 0 chr13 96544937 96547329 -23197569 + L1PA3 LINE L1 3764 6155 0 192 250 42 0 chr13 96547544 96547592 -23197306 - L2 LINE L2 -2 3311 3262 450 14 28 42 chr13 96547599 96547671 -23197227 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 1142 297 63 13 chr13 96547692 96548073 -23196825 - LTR33 LTR ERVL -12 509 110 22 0 0 0 chr13 96548192 96548214 -23196684 + AT_rich Low_complexity Low_complexity 1 22 0 42 20 0 0 chr13 96548237 96548286 -23196612 + AT_rich Low_complexity Low_complexity 1 49 0 1144 234 7 18 chr13 96548286 96548564 -23196334 - MLT2C1 LTR ERVL -118 279 5 3075 145 56 27 chr13 96548564 96549150 -23195748 - LTR26 LTR ERV1 0 603 1 1464 296 135 12 chr13 96549157 96550056 -23194842 - L2 LINE L2 -92 3221 2220 280 409 34 20 chr13 96550169 96550303 -23194595 + L2 LINE L2 3121 3259 -13 302 0 26 0 chr13 96550303 96550341 -23194557 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 280 409 34 20 chr13 96550341 96550355 -23194543 + L2 LINE L2 3259 3271 -1 21 36 0 0 chr13 96550856 96550884 -23194014 + AT_rich Low_complexity Low_complexity 1 28 0 1935 102 4 4 chr13 96551133 96551397 -23193501 - AluSx SINE Alu -14 298 35 266 222 0 0 chr13 96551549 96551603 -23193295 - MLT1L LTR MaLR -414 201 148 538 292 49 28 chr13 96552107 96552279 -23192619 + L1ME4a LINE L1 5533 5715 -406 2027 119 29 57 chr13 96552279 96552665 -23192233 + THE1C LTR MaLR 1 375 0 538 292 49 28 chr13 96552665 96552780 -23192118 + L1ME4a LINE L1 5715 5826 -295 1485 212 37 3 chr13 96552931 96553285 -23191613 - L1PA15 LINE L1 -1707 4439 4074 780 204 6 0 chr13 96553285 96553442 -23191456 + L1PA15 LINE L1 4457 4614 -1532 5328 123 31 8 chr13 96553442 96554536 -23190362 + L1PA15 LINE L1 5035 6148 -17 1345 196 3 53 chr13 96554736 96555037 -23189861 + AluJo SINE Alu 6 291 -21 22 56 0 0 chr13 96555077 96555113 -23189785 + AT_rich Low_complexity Low_complexity 1 36 0 343 191 30 29 chr13 96555246 96555356 -23189542 + L1MC5 LINE L1 7832 8042 0 272 400 0 9 chr13 96555964 96556069 -23188829 - L3 LINE CR1 -44 1533 1430 1482 203 39 80 chr13 96556093 96556580 -23188318 - MLT1C LTR MaLR 0 467 1 507 308 42 19 chr13 96556712 96556926 -23187972 - MIR SINE MIR -10 252 34 464 274 139 14 chr13 96556943 96557151 -23187747 - L3 LINE CR1 -191 1386 1153 654 195 11 81 chr13 96558956 96559141 -23185757 + MER5B DNA MER1_type 1 172 -6 2290 78 17 0 chr13 96559597 96559890 -23185008 + AluY SINE Alu 1 298 -13 22 35 0 0 chr13 96560013 96560042 -23184856 + AT_rich Low_complexity Low_complexity 1 29 0 423 0 0 0 chr13 96562349 96562396 -23182502 + (TG)n Simple_repeat Simple_repeat 2 48 0 1843 184 25 22 chr13 96562396 96562760 -23182138 - MLT1A1 LTR MaLR 0 365 1 412 209 12 12 chr13 96562763 96562849 -23182049 - MLT1A1 LTR MaLR -275 90 5 217 218 39 0 chr13 96562849 96562927 -23181971 + (TA)n Simple_repeat Simple_repeat 2 82 0 240 59 0 0 chr13 96564795 96564829 -23180069 + (CA)n Simple_repeat Simple_repeat 1 34 0 226 108 108 0 chr13 96564831 96564868 -23180030 - MLT2D LTR ERVL -7 390 350 206 337 0 11 chr13 96564868 96564957 -23179941 + (TATATG)n Simple_repeat Simple_repeat 4 91 0 313 157 0 0 chr13 96565068 96565119 -23179779 - L2 LINE L2 -1 3312 3262 216 182 0 0 chr13 96565140 96565184 -23179714 + (CA)n Simple_repeat Simple_repeat 1 44 0 1512 197 90 3 chr13 96565203 96565538 -23179360 - MLT2D LTR ERVL -50 364 1 1931 150 0 0 chr13 96565655 96565942 -23178956 + AluSx SINE Alu 1 287 -25 637 167 210 49 chr13 96566576 96566738 -23178160 + MER58C DNA MER1_type 28 215 0 305 167 309 24 chr13 96567365 96567449 -23177449 - L2 LINE L2 -1 3312 3205 4065 191 23 47 chr13 96567828 96569092 -23175806 + L1MB2 LINE L1 5062 6299 -1 23 33 0 0 chr13 96569143 96569173 -23175725 + AT_rich Low_complexity Low_complexity 1 30 0 206 121 0 0 chr13 96569336 96569369 -23175529 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 958 195 103 0 chr13 96570017 96570212 -23174686 + MER20 DNA MER1_type 1 215 -4 2068 191 105 3 chr13 96570442 96571199 -23173699 + SATR1 Satellite Satellite 1 834 0 1596 224 77 20 chr13 96571230 96571780 -23173118 - SATR1 Satellite Satellite -92 581 1 2055 203 118 6 chr13 96571808 96572884 -23172014 - SATR1 Satellite Satellite -1 1196 1 2271 186 98 8 chr13 96572920 96573787 -23171111 - SATR1 Satellite Satellite 0 945 1 418 237 15 35 chr13 96573793 96574136 -23170762 + (TTA)n Simple_repeat Simple_repeat 1 335 0 2398 168 104 10 chr13 96574136 96576554 -23168344 + SATR1 Satellite Satellite 1 2645 -2 1986 190 98 30 chr13 96576583 96577426 -23167472 + SATR1 Satellite Satellite 1 900 -3 2067 246 105 44 chr13 96577460 96579391 -23165507 - SATR1 Satellite Satellite -8 2047 1 215 348 80 7 chr13 96579401 96579539 -23165359 + MIR SINE MIR 99 246 -16 300 317 83 29 chr13 96580493 96580698 -23164200 - L2 LINE L2 -453 2861 2646 1215 185 23 128 chr13 96580851 96581194 -23163704 - MLT2D LTR ERVL 0 520 119 1654 204 48 40 chr13 96581194 96581743 -23163155 + MLT2A2 LTR ERVL 1 554 0 562 190 16 0 chr13 96581743 96581864 -23163034 - MLT2D LTR ERVL -291 123 1 439 125 14 0 chr13 96581864 96581936 -23162962 - ERVL-D LTR ERVL -7 5757 5685 378 131 0 16 chr13 96581941 96582002 -23162896 - MSTD LTR MaLR -336 60 1 2569 239 36 12 chr13 96582090 96582647 -23162251 - ERVL-D LTR ERVL -4597 1167 625 1460 241 47 8 chr13 96582647 96583028 -23161870 + MSTD LTR MaLR 1 396 0 2569 239 36 12 chr13 96583028 96583537 -23161361 - ERVL-D LTR ERVL -5139 625 2 861 238 13 45 chr13 96583538 96583773 -23161125 - MLT2D LTR ERVL 0 414 226 288 183 0 67 chr13 96583769 96583829 -23161069 - MLT2D LTR ERVL -118 296 241 * 189 0 0 0 chr13 96584006 96584027 -23160871 + (T)n Simple_repeat Simple_repeat 1 21 0 1914 116 60 3 chr13 96584699 96584984 -23159914 + AluSx SINE Alu 1 301 -11 189 0 0 0 chr13 96585061 96585082 -23159816 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 275 334 132 48 chr13 96585312 96586184 -23158714 + L2 LINE L2 1712 2656 -658 242 361 0 0 chr13 96586484 96586545 -23158353 - L2 LINE L2 -27 3245 3185 2069 179 0 8 chr13 96587147 96587515 -23157383 + MLT1A1 LTR MaLR 1 365 0 581 210 69 5 chr13 96589239 96589391 -23155507 + Tigger3(Golem) DNA MER2_type 1 2867 -162 3858 204 29 50 chr13 96589482 96589909 -23154989 + MER21B LTR ERV1 12 413 -450 2294 33 3 33 chr13 96589909 96590212 -23154686 - L1PA4 LINE L1 0 6155 5862 3858 204 29 50 chr13 96590212 96590652 -23154246 + MER21B LTR ERV1 413 861 -2 34 89 0 0 chr13 96591632 96591722 -23153176 + AT_rich Low_complexity Low_complexity 1 90 0 2619 225 86 25 chr13 96591927 96592211 -23152687 + Charlie5 DNA MER1_type 1 266 -2358 2193 163 74 20 chr13 96592211 96592615 -23152283 + MSTB LTR MaLR 1 426 0 2619 225 86 25 chr13 96592615 96592634 -23152264 + Charlie5 DNA MER1_type 266 282 -2342 1534 115 0 77 chr13 96592634 96592894 -23152004 - AluSg/x SINE Alu -6 306 67 2619 225 86 25 chr13 96592894 96593447 -23151451 + Charlie5 DNA MER1_type 282 911 -1713 1769 169 15 3 chr13 96593454 96593780 -23151118 + MER46B DNA MER2_type 31 235 -1 2105 180 64 69 chr13 96593781 96594018 -23150880 + Charlie5 DNA MER1_type 2016 2253 -371 1807 146 52 0 chr13 96594018 96594305 -23150593 - AluSx SINE Alu -10 302 1 2105 180 64 69 chr13 96594305 96594678 -23150220 + Charlie5 DNA MER1_type 2253 2623 -1 349 250 38 0 chr13 96595574 96595654 -23149244 - MIR3 SINE MIR -11 197 115 3467 114 10 4 chr13 96597344 96597851 -23147047 + MER9 LTR ERVK 2 511 0 1278 228 29 0 chr13 96597950 96598226 -23146672 - AluJo SINE Alu -28 284 1 903 223 18 20 chr13 96598634 96598901 -23145997 - MLT1B LTR MaLR -120 347 29 236 241 0 0 chr13 96600249 96600307 -23144591 - L1MC4 LINE L1 -1332 6710 6653 318 87 0 0 chr13 96600990 96601036 -23143862 + (T)n Simple_repeat Simple_repeat 1 46 0 2109 128 0 10 chr13 96601243 96601547 -23143351 + AluSg SINE Alu 1 301 -9 216 0 0 0 chr13 96601575 96601599 -23143299 + (A)n Simple_repeat Simple_repeat 1 24 0 2179 167 21 30 chr13 96601863 96602295 -23142603 - MSTA LTR MaLR 0 428 1 282 328 139 0 chr13 96603354 96603476 -23141422 + MER5A DNA MER1_type 1 139 -50 459 185 25 76 chr13 96603529 96603686 -23141212 - L1MA9 LINE L1 -41 6271 6123 260 342 86 13 chr13 96604269 96604421 -23140477 + MIR SINE MIR 26 188 -74 198 143 0 0 chr13 96604477 96604512 -23140386 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 1420 162 76 86 chr13 96604920 96605223 -23139675 - AluJb SINE Alu -12 300 1 297 174 37 56 chr13 96605324 96605485 -23139413 + (TTATA)n Simple_repeat Simple_repeat 3 160 0 40 21 0 0 chr13 96605497 96605544 -23139354 + AT_rich Low_complexity Low_complexity 1 47 0 275 343 39 0 chr13 96605576 96605678 -23139220 + MIR3 SINE MIR 99 204 -4 2178 98 30 0 chr13 96605974 96606269 -23138629 - AluSg SINE Alu -6 304 1 22 0 0 0 chr13 96606609 96606631 -23138267 + AT_rich Low_complexity Low_complexity 1 22 0 1748 109 0 4 chr13 96607041 96607279 -23137619 + AluY SINE Alu 66 302 -9 1697 175 0 11 chr13 96607504 96607811 -23137087 - AluSx SINE Alu 0 304 1 1958 141 3 0 chr13 96607934 96608248 -23136650 - AluSx SINE Alu 0 315 1 406 290 23 0 chr13 96608767 96608898 -23136000 - MIR SINE MIR -12 250 117 2743 147 19 2 chr13 96608934 96609441 -23135457 + L1MA7 LINE L1 5283 5828 -343 2406 154 25 27 chr13 96609555 96610029 -23134869 + L1MA7 LINE L1 5815 6287 -4 207 0 0 0 chr13 96610069 96610092 -23134806 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1306 20 0 0 chr13 96610092 96610244 -23134654 - L1PA3 LINE L1 -8 6147 5996 25 75 0 0 chr13 96610352 96610405 -23134493 + AT_rich Low_complexity Low_complexity 1 53 0 5757 181 20 4 chr13 96611148 96614537 -23130361 - L1PA13 LINE L1 -12 7589 4025 2435 166 20 0 chr13 96614539 96614937 -23129961 - L1PA13 LINE L1 -7170 411 6 1488 155 7 4 chr13 96614944 96615215 -23129683 + L1 LINE L1 4612 4883 -1263 21 0 0 0 chr13 96615379 96615400 -23129498 + AT_rich Low_complexity Low_complexity 1 21 0 3721 287 144 34 chr13 96615452 96615820 -23129078 - L2 LINE L2 -337 2977 2651 2601 165 14 0 chr13 96615820 96616238 -23128660 + MSTB LTR MaLR 3 426 0 3721 287 144 34 chr13 96616238 96617571 -23127327 - L2 LINE L2 -663 2651 1089 26 50 0 0 chr13 96618137 96618177 -23126721 + AT_rich Low_complexity Low_complexity 1 40 0 432 278 86 5 chr13 96619021 96619219 -23125679 - L1ME3A LINE L1 -222 5931 5718 365 273 145 28 chr13 96619349 96619822 -23125076 - L1ME3A LINE L1 -637 5512 4987 331 200 32 21 chr13 96620102 96620197 -23124701 - L1ME3A LINE L1 -1479 4650 4555 30 27 0 0 chr13 96620238 96620275 -23124623 + AT_rich Low_complexity Low_complexity 1 37 0 644 290 77 40 chr13 96620324 96620990 -23123908 - L1ME3A LINE L1 -3142 2987 2298 514 335 107 23 chr13 96620998 96621383 -23123515 - L1ME3A LINE L1 -5669 450 34 3308 63 14 0 chr13 96621658 96622086 -23122812 - L1PA8 LINE L1 -6 6166 5733 1363 86 11 32 chr13 96622086 96622338 -23122560 + L1P LINE L1 5177 5424 -730 1673 178 7 13 chr13 96622338 96622636 -23122262 - AluJo SINE Alu -16 296 1 1788 162 16 3 chr13 96622638 96622946 -23121952 - AluJo SINE Alu 0 312 1 45 75 0 0 chr13 96623383 96623477 -23121421 + AT_rich Low_complexity Low_complexity 1 94 0 484 277 43 53 chr13 96623660 96623685 -23121213 - L1ME LINE L1 -589 5575 5551 953 111 12 23 chr13 96623685 96623856 -23121042 - L1MA9 LINE L1 -5 6307 6139 484 277 43 53 chr13 96623856 96624295 -23120603 - L1ME LINE L1 -613 5551 5106 884 263 32 88 chr13 96624322 96624911 -23119987 - L1ME LINE L1 -2017 4129 3574 22 70 0 0 chr13 96625603 96625646 -23119252 + AT_rich Low_complexity Low_complexity 1 43 0 1824 95 3 102 chr13 96625986 96626290 -23118608 + AluSc SINE Alu 1 274 -35 927 288 79 23 chr13 96626493 96626847 -23118051 + MLT1J LTR MaLR 103 476 -35 2300 142 17 6 chr13 96627557 96627917 -23116981 + THE1B LTR MaLR 1 364 0 514 188 50 0 chr13 96628709 96628810 -23116088 - MIR SINE MIR -81 181 76 5928 46 47 3 chr13 96630528 96631288 -23113610 + L1PA6 LINE L1 5361 6154 0 287 356 57 93 chr13 96631397 96631871 -23113027 - L2 LINE L2 -9 3263 2807 606 212 24 4 chr13 96632311 96632528 -23112370 + MER89 LTR ERV1 1 321 -238 743 287 42 0 chr13 96633175 96633391 -23111507 - MIR SINE MIR -26 236 12 431 288 144 1 chr13 96633484 96633652 -23111246 - MIR SINE MIR -62 146 1 1842 130 42 79 chr13 96634910 96635288 -23109610 + THE1B LTR MaLR 1 364 0 198 0 0 0 chr13 96636703 96636725 -23108173 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 391 233 14 89 chr13 96636941 96637087 -23107811 + L2 LINE L2 3179 3313 0 354 292 26 52 chr13 96637697 96637851 -23107047 + L2 LINE L2 3163 3312 -1 24 0 0 0 chr13 96638253 96638277 -23106621 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 96638411 96638432 -23106466 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr13 96638498 96638533 -23106365 + (CA)n Simple_repeat Simple_repeat 1 35 0 1811 158 10 10 chr13 96638815 96639113 -23105785 - AluJo SINE Alu -14 298 1 907 203 147 23 chr13 96639439 96639705 -23105193 - MLT1C LTR MaLR 0 467 169 2532 173 19 32 chr13 96639754 96640287 -23104611 - L1MA9 LINE L1 0 6312 5787 3404 156 58 27 chr13 96640290 96641021 -23103877 - Tigger3(Golem) DNA MER2_type 0 3029 2277 424 277 0 36 chr13 96641011 96641123 -23103775 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 2501 196 28 7 chr13 96641145 96642092 -23102806 - L1MA9 LINE L1 -548 5764 4948 728 200 38 32 chr13 96642092 96642277 -23102621 - MLT1C LTR MaLR -281 186 1 483 187 35 0 chr13 96642619 96642790 -23102108 + (TA)n Simple_repeat Simple_repeat 2 178 0 1170 255 118 59 chr13 96642793 96643283 -23101615 + MLT1G1 LTR MaLR 42 560 -35 * 1638 182 65 27 chr13 96643281 96643650 -23101248 + MLT1B LTR MaLR 8 390 0 347 259 24 0 chr13 96644343 96644428 -23100470 - MIR SINE MIR -105 157 71 28 29 0 0 chr13 96644557 96644592 -23100306 + AT_rich Low_complexity Low_complexity 1 35 0 1645 195 70 6 chr13 96644665 96645008 -23099890 - MLT1A1 LTR MaLR 0 365 1 2162 109 38 44 chr13 96645694 96646060 -23098838 - THE1B LTR MaLR 0 364 1 24 77 0 0 chr13 96648072 96648124 -23096774 + AT_rich Low_complexity Low_complexity 1 52 0 38 75 0 0 chr13 96648775 96648855 -23096043 + AT_rich Low_complexity Low_complexity 1 80 0 182 385 68 20 chr13 96649071 96649320 -23095578 + L2 LINE L2 2686 2946 -368 302 242 11 0 chr13 96649507 96649602 -23095296 + MER69 DNA AcHobo 2384 2479 -47 1322 160 0 10 chr13 96649781 96650008 -23094890 + AluJb SINE Alu 84 308 0 2246 93 3 0 chr13 96650051 96650341 -23094557 - AluSx SINE Alu -21 291 1 1848 196 67 53 chr13 96650403 96650812 -23094086 + L1MC3 LINE L1 7247 7666 -119 2121 119 20 0 chr13 96650812 96651114 -23093784 + AluSx SINE Alu 1 308 -4 1848 196 67 53 chr13 96651114 96651229 -23093669 + L1MC3 LINE L1 7666 7778 -7 2191 168 64 5 chr13 96651664 96652068 -23092830 + MSTA LTR MaLR 1 428 0 1689 267 55 21 chr13 96652343 96652916 -23091982 - MLT1G LTR MaLR 0 590 3 24 32 0 0 chr13 96653549 96653580 -23091318 + AT_rich Low_complexity Low_complexity 1 31 0 2821 244 52 54 chr13 96653674 96654893 -23090005 - L1MC4 LINE L1 -128 7914 6698 16187 217 29 14 chr13 96655292 96660627 -23084271 + L1PA15 LINE L1 1287 6763 -53 506 150 0 0 chr13 96660627 96660707 -23084191 - MADE1 DNA Mariner 0 80 1 16187 217 29 14 chr13 96660707 96660749 -23084149 + L1PA15 LINE L1 6763 6803 -13 2231 112 3 0 chr13 96661004 96661307 -23083591 - AluSc SINE Alu -5 304 1 24 91 0 0 chr13 96661382 96661448 -23083450 + AT_rich Low_complexity Low_complexity 1 66 0 273 244 100 49 chr13 96661603 96661931 -23082967 - L1ME3A LINE L1 -233 5920 5494 * 350 194 0 0 chr13 96661929 96661991 -23082907 - L1MA10 LINE L1 -104 6230 6169 1198 151 13 111 chr13 96662147 96662445 -23082453 - L1MC1 LINE L1 -11 6322 6054 * 6256 172 73 29 chr13 96662420 96663756 -23081142 - L1MCa LINE L1 -5026 1400 7 322 315 130 10 chr13 96663752 96664060 -23080838 - L1ME3A LINE L1 -1827 4302 3958 * 250 238 36 0 chr13 96664163 96664247 -23080651 - L1ME3A LINE L1 -5257 862 776 1865 199 69 43 chr13 96665521 96666013 -23078885 - MLT1D LTR MaLR 0 505 1 214 231 77 0 chr13 96666692 96666744 -23078154 - MIR SINE MIR -73 189 134 307 286 38 60 chr13 96667542 96667609 -23077289 + MLT1J2 LTR MaLR 4 68 -382 1792 166 102 6 chr13 96667609 96667941 -23076957 - THE1B LTR MaLR 0 364 1 307 286 38 60 chr13 96667941 96668006 -23076892 + MLT1J2 LTR MaLR 68 133 -317 327 291 51 8 chr13 96668540 96668657 -23076241 + L2 LINE L2 3192 3313 0 237 239 45 15 chr13 96669572 96669639 -23075259 - L2 LINE L2 -1 3312 3244 199 320 0 0 chr13 96671382 96671432 -23073466 + L2 LINE L2 2579 2628 -686 1958 143 6 0 chr13 96671473 96671788 -23073110 + L1MB1 LINE L1 5851 6167 -1 345 284 35 43 chr13 96671808 96671924 -23072974 - L2 LINE L2 -2 3311 3197 549 249 29 23 chr13 96672083 96672256 -23072642 - LTR67 LTR ERVL -3 554 381 209 200 0 0 chr13 96672353 96672393 -23072505 + GA-rich Low_complexity Low_complexity 1 40 0 316 349 4 95 chr13 96672420 96672661 -23072237 - LTR67 LTR ERVL -335 222 4 289 346 129 74 chr13 96672684 96672870 -23072028 + L2 LINE L2 2870 3044 -228 954 246 52 0 chr13 96672870 96673081 -23071817 + MER58A DNA MER1_type 3 224 0 289 346 129 74 chr13 96673081 96673273 -23071625 + L2 LINE L2 3044 3269 -3 2141 125 0 3 chr13 96673688 96673984 -23070914 + AluSq SINE Alu 1 295 -18 1313 199 98 16 chr13 96674040 96674357 -23070541 - MER2 DNA MER2_type -1 343 1 264 228 250 16 chr13 96674476 96674660 -23070238 - MER112 DNA MER1_type -17 243 17 209 269 295 0 chr13 96674896 96674974 -23069924 + MER5A DNA MER1_type 86 186 -3 2194 134 5 47 chr13 96675156 96675536 -23069362 + THE1B LTR MaLR 1 364 0 11716 89 11 4 chr13 96675538 96677105 -23067793 + THE1B-int LTR MaLR 3 1580 0 2385 124 5 27 chr13 96677105 96677477 -23067421 + THE1B LTR MaLR 1 364 0 1094 206 121 126 chr13 96677567 96677979 -23066919 + MLT2B1 LTR ERVL 5 414 0 250 303 82 0 chr13 96678055 96678177 -23066721 + L1MEc LINE L1 251 382 -6014 * 453 246 36 0 chr13 96678170 96678280 -23066618 + L1MEc LINE L1 1730 1843 -4553 2058 132 14 173 chr13 96678285 96678771 -23066127 - LTR32 LTR ERVL 0 471 63 1217 182 85 28 chr13 96679085 96679449 -23065449 - MSTC LTR MaLR -3 425 3 1606 173 0 34 chr13 96679660 96679955 -23064943 + AluJb SINE Alu 3 287 -25 2101 252 10 7 chr13 96679979 96680574 -23064324 - L1 LINE L1 -2989 3157 2561 1721 206 46 10 chr13 96680574 96680987 -23063911 + L1PB4 LINE L1 3477 3904 -2242 5796 185 12 15 chr13 96680989 96681922 -23062976 + L1PB4 LINE L1 4099 5033 -1123 1483 197 13 27 chr13 96681922 96682221 -23062677 + AluJb SINE Alu 1 295 -17 5796 185 12 15 chr13 96682221 96683347 -23061551 + L1PB4 LINE L1 5033 6154 -2 42 36 0 0 chr13 96683416 96683472 -23061426 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr13 96683912 96683936 -23060962 + AT_rich Low_complexity Low_complexity 1 24 0 567 236 97 68 chr13 96684161 96684470 -23060428 - LTR37A LTR ERV1 -15 411 94 22 0 0 0 chr13 96684570 96684592 -23060306 + AT_rich Low_complexity Low_complexity 1 22 0 347 168 158 0 chr13 96685206 96685307 -23059591 - LTR37A LTR ERV1 -3 423 307 3966 95 65 5 chr13 96685313 96685902 -23058996 - L1PB1 LINE L1 -3 6148 5525 222 132 29 15 chr13 96685947 96686015 -23058883 + (TA)n Simple_repeat Simple_repeat 1 69 0 457 243 34 40 chr13 96686269 96686446 -23058452 - LTR37A LTR ERV1 -233 193 18 2128 118 0 3 chr13 96687012 96687308 -23057590 - AluSx SINE Alu -17 295 1 237 65 0 0 chr13 96687566 96687597 -23057301 + (TTG)n Simple_repeat Simple_repeat 2 32 0 262 302 178 24 chr13 96688512 96688681 -23056217 - MER117 DNA MER1_type -2 195 1 6105 45 30 3 chr13 96688838 96689597 -23055301 + LTR17 LTR ERV1 1 780 0 2271 177 85 8 chr13 96691393 96691862 -23053036 - MLT1D LTR MaLR 0 505 1 299 232 37 12 chr13 96692336 96692418 -23052480 + L1ME3A LINE L1 6073 6156 -14 195 325 121 25 chr13 96692519 96692676 -23052222 - MIR SINE MIR -16 246 75 7280 158 46 9 chr13 96692776 96693040 -23051858 + L1MA8 LINE L1 3971 4224 -2067 378 0 0 0 chr13 96693040 96693082 -23051816 + (CA)n Simple_repeat Simple_repeat 1 42 0 7280 158 46 9 chr13 96693082 96695046 -23049852 + L1MA8 LINE L1 4224 6288 -3 25 51 0 0 chr13 96695280 96695319 -23049579 + AT_rich Low_complexity Low_complexity 1 39 0 2377 94 0 0 chr13 96695429 96695738 -23049160 + AluY SINE Alu 1 309 -2 21 57 0 0 chr13 96696141 96696176 -23048722 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr13 96696320 96696345 -23048553 + AT_rich Low_complexity Low_complexity 1 25 0 195 288 38 25 chr13 96696374 96696454 -23048444 + L2 LINE L2 3191 3271 -42 * 199 214 0 24 chr13 96696426 96696468 -23048430 - L2 LINE L2 -2497 817 777 256 218 36 0 chr13 96696541 96696596 -23048302 - MER115 DNA AcHobo 0 693 637 265 242 152 0 chr13 96697122 96697221 -23047677 - Charlie8 DNA MER1_type -2292 125 12 1649 114 141 8 chr13 96697657 96697920 -23046978 - AluSg1 SINE Alu -10 299 2 1015 92 8 0 chr13 96697925 96698055 -23046843 - AluSg1 SINE Alu -178 131 1 2325 110 0 0 chr13 96701411 96701712 -23043186 - AluSg SINE Alu -9 301 1 22 0 0 0 chr13 96702208 96702230 -23042668 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 96703090 96703111 -23041787 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr13 96703173 96703218 -23041680 + AT_rich Low_complexity Low_complexity 1 45 0 1354 183 117 0 chr13 96703219 96703476 -23041422 - AluJb SINE Alu -25 287 1 450 274 148 22 chr13 96705055 96705285 -23039613 - MLT1L LTR MaLR 0 615 357 189 0 0 0 chr13 96705340 96705361 -23039537 + (T)n Simple_repeat Simple_repeat 1 21 0 1816 171 3 3 chr13 96705753 96706063 -23038835 - AluSx SINE Alu -1 311 2 2513 52 3 0 chr13 96706208 96706518 -23038380 - AluY SINE Alu 0 311 1 2299 91 3 0 chr13 96706518 96706814 -23038084 - AluSp SINE Alu -16 297 1 290 78 0 20 chr13 96707809 96707860 -23037038 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr13 96710465 96710493 -23034405 + GC_rich Low_complexity Low_complexity 1 28 0 600 349 44 27 chr13 96712707 96713005 -23031893 - L3b LINE CR1 -8 1575 1273 613 324 25 37 chr13 96713311 96713555 -23031343 - MIR SINE MIR -5 257 17 954 71 0 0 chr13 96713635 96713762 -23031136 + (TA)n Simple_repeat Simple_repeat 2 128 0 283 301 0 0 chr13 96715761 96715834 -23029064 - L2 LINE L2 -1 3312 3240 1225 229 65 52 chr13 96716189 96716713 -23028185 + LTR55 LTR ERV 16 546 -2 238 301 277 15 chr13 96716715 96716921 -23027977 - L2 LINE L2 -531 2783 2524 180 77 0 0 chr13 96716984 96717010 -23027888 + (TG)n Simple_repeat Simple_repeat 1 26 0 301 102 34 0 chr13 96717010 96717069 -23027829 + GA-rich Low_complexity Low_complexity 2 62 0 21 0 0 0 chr13 96717965 96717986 -23026912 + AT_rich Low_complexity Low_complexity 1 21 0 422 312 96 28 chr13 96718061 96718455 -23026443 - MLT1L LTR MaLR 0 615 195 12341 222 24 30 chr13 96718555 96718746 -23026152 - L1PB3 LINE L1 0 6856 6665 2089 169 15 0 chr13 96718746 96719078 -23025820 + MER1B DNA MER1_type 1 337 0 12341 222 24 30 chr13 96719078 96725070 -23019828 - L1PB3 LINE L1 -191 6665 650 717 268 0 0 chr13 96725071 96725250 -23019648 - L1PBa LINE L1 -5257 1606 1428 266 360 38 56 chr13 96725218 96725752 -23019146 - L1PB3 LINE L1 -6320 529 6 * 1132 297 73 51 chr13 96725743 96727252 -23017646 - L1PBa LINE L1 -5420 1428 -12 383 235 76 25 chr13 96727391 96727510 -23017388 + MER63 DNA MER1_type 1 751 -85 255 143 0 0 chr13 96727511 96727553 -23017345 + MER63 DNA MER1_type 978 1019 -42 236 154 19 0 chr13 96727651 96727703 -23017195 + CT-rich Low_complexity Low_complexity 3 55 0 932 174 16 33 chr13 96727757 96727941 -23016957 - MER5A DNA MER1_type 0 189 9 26 30 0 0 chr13 96728808 96728841 -23016057 + AT_rich Low_complexity Low_complexity 1 33 0 1684 83 35 4 chr13 96728913 96729141 -23015757 + AluY SINE Alu 75 309 -2 439 293 128 16 chr13 96732379 96732567 -23012331 + MIR SINE MIR 49 257 -5 2121 124 41 36 chr13 96733145 96733507 -23011391 - THE1B LTR MaLR 0 364 1 980 204 16 0 chr13 96734365 96734551 -23010347 - MER5A DNA MER1_type 0 189 1 225 175 25 0 chr13 96735053 96735093 -23009805 + L2 LINE L2 3258 3298 -15 1725 161 17 30 chr13 96736370 96736668 -23008230 + AluJo SINE Alu 6 299 -13 21 0 0 0 chr13 96736722 96736743 -23008155 + AT_rich Low_complexity Low_complexity 1 21 0 859 204 41 0 chr13 96737526 96737746 -23007152 - L1MA4 LINE L1 -2 6298 6070 1641 145 3 107 chr13 96738175 96738513 -23006385 + AluSq SINE Alu 1 303 -10 2126 91 4 4 chr13 96739037 96739313 -23005585 + AluSx SINE Alu 7 282 -30 2265 94 0 3 chr13 96739368 96739656 -23005242 + AluY SINE Alu 1 287 -24 2217 94 6 41 chr13 96739680 96740000 -23004898 + AluSq SINE Alu 5 313 0 284 263 34 0 chr13 96740368 96740486 -23004412 + L1MC4 LINE L1 7919 8040 -2 198 271 75 38 chr13 96740499 96740632 -23004266 - L2 LINE L2 -1480 1834 1697 2088 153 0 0 chr13 96740661 96740969 -23003929 + AluSx SINE Alu 3 310 -2 4227 190 40 11 chr13 96741116 96742436 -23002462 + L1MC1 LINE L1 4756 6116 -217 676 203 19 39 chr13 96742445 96742652 -23002246 - PABL_B LTR ERV1 -7 660 458 1122 158 9 35 chr13 96743155 96743383 -23001515 + L1MC1 LINE L1 6111 6332 -1 2326 91 3 3 chr13 96743487 96743784 -23001114 - AluSx SINE Alu -11 301 5 699 103 0 10 chr13 96744822 96744919 -22999979 + FLAM_C SINE Alu 22 117 -26 303 237 0 82 chr13 96746027 96746124 -22998774 - MIR3 SINE MIR -28 180 92 2047 132 3 13 chr13 96746158 96746461 -22998437 - AluSx SINE Alu -12 300 1 22 0 0 0 chr13 96746685 96746707 -22998191 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 96747397 96747419 -22997479 + AT_rich Low_complexity Low_complexity 1 22 0 446 316 36 10 chr13 96748088 96748281 -22996617 + MLT1J LTR MaLR 1 198 -313 420 268 98 11 chr13 96749451 96749727 -22995171 - L1M4c LINE L1 -4060 2586 2287 1871 245 59 40 chr13 96749843 96750626 -22994272 - L1M4c LINE L1 -4586 2060 1263 1244 179 71 15 chr13 96750628 96750896 -22994002 + MSTB LTR MaLR 144 426 0 7516 193 51 11 chr13 96750896 96751500 -22993398 + MSTB-int LTR MaLR 1 579 -1072 1946 141 54 25 chr13 96751500 96751854 -22993044 - THE1B LTR MaLR 0 364 1 7516 193 51 11 chr13 96751854 96752831 -22992067 + MSTB-int LTR MaLR 579 1646 -5 2001 165 83 10 chr13 96752838 96753233 -22991665 + MSTB LTR MaLR 3 426 0 26 64 0 0 chr13 96753238 96753285 -22991613 + AT_rich Low_complexity Low_complexity 1 47 0 467 254 9 9 chr13 96753302 96753412 -22991486 - FLAM_C SINE Alu -33 110 1 3467 232 69 51 chr13 96753425 96754489 -22990409 - L1M4c LINE L1 -5304 1238 149 1718 143 72 39 chr13 96754489 96754852 -22990046 + THE1C LTR MaLR 1 375 0 3467 232 69 51 chr13 96754852 96754968 -22989930 - L1M4c LINE L1 -6393 149 37 22 35 0 0 chr13 96755001 96755030 -22989868 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr13 96756930 96756969 -22987929 + AT_rich Low_complexity Low_complexity 1 39 0 41 66 0 0 chr13 96757069 96757145 -22987753 + AT_rich Low_complexity Low_complexity 1 76 0 256 200 95 67 chr13 96757609 96757714 -22987184 + MIR SINE MIR 14 121 -141 740 208 0 0 chr13 96757832 96757962 -22986936 + FLAM_C SINE Alu 1 130 -3 21 0 0 0 chr13 96758072 96758093 -22986805 + AT_rich Low_complexity Low_complexity 1 21 0 1499 180 24 27 chr13 96758182 96758373 -22986525 - AluJo SINE Alu -19 293 103 1821 147 95 54 chr13 96758373 96758414 -22986484 - MSTB LTR MaLR 0 426 388 2206 122 0 6 chr13 96758414 96758715 -22986183 + AluSx SINE Alu 1 301 -11 204 40 0 0 chr13 96758715 96758740 -22986158 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 1821 147 95 54 chr13 96758750 96759117 -22985781 - MSTB LTR MaLR -38 388 1 1499 180 24 27 chr13 96759117 96759219 -22985679 - AluJo SINE Alu -209 103 1 2508 69 0 0 chr13 96759572 96759876 -22985022 + AluY SINE Alu 1 304 -7 634 197 69 44 chr13 96760285 96760484 -22984414 + MLT1A1 LTR MaLR 15 215 -150 971 291 60 49 chr13 96760565 96761083 -22983815 - L2 LINE L2 0 3313 2802 2160 185 21 30 chr13 96761083 96761515 -22983383 - MSTC LTR MaLR 0 428 1 971 291 60 49 chr13 96761515 96761595 -22983303 - L2 LINE L2 -511 2802 2724 3455 78 7 0 chr13 96761595 96762044 -22982854 + MLT2A2 LTR ERVL 1 452 -1 971 291 60 49 chr13 96762044 96762260 -22982638 - L2 LINE L2 -589 2724 2490 395 351 39 15 chr13 96762440 96762645 -22982253 - MLT1J LTR MaLR -148 363 154 2145 120 45 36 chr13 96762672 96763031 -22981867 - THE1B LTR MaLR -2 362 1 674 264 41 66 chr13 96763220 96763583 -22981315 + MER110 LTR ERV1 102 455 -36 251 270 14 0 chr13 96764427 96764501 -22980397 + MER89-int LTR ERV1 890 964 -5837 1870 215 62 29 chr13 96764654 96765142 -22979756 + MLT1D LTR MaLR 2 505 0 23 33 0 0 chr13 96766824 96766854 -22978044 + AT_rich Low_complexity Low_complexity 1 30 0 * 386 311 110 34 chr13 96766842 96766918 -22977980 - L1MC4a LINE L1 -1849 5959 5890 2915 209 15 39 chr13 96766918 96767587 -22977311 + MER82 DNA MER2_type 1 653 0 386 311 110 34 chr13 96767587 96767864 -22977034 - L1MC4a LINE L1 -1918 5890 5579 820 40 0 0 chr13 96768747 96768847 -22976051 - L1PA7 LINE L1 -480 5674 5575 3396 57 41 0 chr13 96768847 96769286 -22975612 + L1PA7 LINE L1 5686 6143 -11 208 331 147 29 chr13 96769818 96770063 -22974835 + L2 LINE L2 2818 3091 -181 180 143 71 0 chr13 96770122 96770164 -22974734 - MIR SINE MIR -119 143 99 181 344 108 21 chr13 96770604 96770697 -22974201 - MIR SINE MIR -92 116 16 2106 154 5 30 chr13 96771046 96771180 -22973718 - THE1B LTR MaLR -2 362 226 2191 116 3 0 chr13 96771180 96771472 -22973426 - AluSq SINE Alu -20 293 1 2106 154 5 30 chr13 96771472 96771708 -22973190 - THE1B LTR MaLR -138 226 1 936 237 118 0 chr13 96771810 96772038 -22972860 - MSTB LTR MaLR -68 358 104 207 0 0 0 chr13 96772721 96772744 -22972154 + (A)n Simple_repeat Simple_repeat 1 23 0 379 206 0 0 chr13 96773439 96773512 -22971386 - L2 LINE L2 0 3313 3241 335 313 145 0 chr13 96773635 96773766 -22971132 + L2 LINE L2 3164 3313 0 220 294 109 33 chr13 96773738 96773830 -22971068 - L2 LINE L2 -10 3262 3164 * 205 224 0 26 chr13 96774107 96774183 -22970715 + CT-rich Low_complexity Low_complexity 1 74 0 22 35 0 0 chr13 96774278 96774307 -22970591 + AT_rich Low_complexity Low_complexity 1 29 0 2012 130 146 11 chr13 96774313 96774690 -22970208 - MSTA LTR MaLR 0 428 1 1732 88 19 31 chr13 96775427 96775687 -22969211 - L1PA10 LINE L1 -12 6156 5900 22 35 0 0 chr13 96775836 96775865 -22969033 + AT_rich Low_complexity Low_complexity 1 29 0 310 376 77 15 chr13 96776304 96776642 -22968256 + L2 LINE L2 2304 2662 -652 747 214 26 13 chr13 96776738 96776892 -22968006 + MER20 DNA MER1_type 64 219 0 229 421 8 0 chr13 96776896 96777029 -22967869 + L2 LINE L2 2665 2798 -516 902 270 86 42 chr13 96777132 96777469 -22967429 - MSTD LTR MaLR -44 352 1 23 33 0 0 chr13 96777621 96777651 -22967247 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr13 96777800 96777839 -22967059 + AT_rich Low_complexity Low_complexity 1 39 0 2108 114 0 20 chr13 96777947 96778253 -22966645 - AluSq SINE Alu -11 302 3 270 56 0 0 chr13 96778334 96778370 -22966528 + (TG)n Simple_repeat Simple_repeat 1 36 0 457 357 97 23 chr13 96778498 96778890 -22966008 - HAL1b LINE L1 -902 446 26 1798 154 17 7 chr13 96779423 96779715 -22965183 - AluSx SINE Alu -13 299 5 672 354 86 35 chr13 96780004 96780770 -22964128 + L1ME1 LINE L1 250 1054 -5553 349 293 16 31 chr13 96780872 96781063 -22963835 + L1ME1 LINE L1 1482 1669 -4757 * 610 273 21 8 chr13 96781051 96781318 -22963580 + L1ME1 LINE L1 2378 2607 -3819 1818 246 44 7 chr13 96781346 96781964 -22962934 + L1ME1 LINE L1 2696 3336 -3090 821 198 35 41 chr13 96781966 96782163 -22962735 + AluJo SINE Alu 113 308 -4 738 309 68 9 chr13 96782176 96782629 -22962269 + L1ME1 LINE L1 3362 3841 -2585 189 94 0 0 chr13 96782634 96782666 -22962232 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 6338 146 101 15 chr13 96782670 96783845 -22961053 + MER52C LTR ERV1 1 1276 -2 1051 272 32 30 chr13 96783849 96784283 -22960615 + L1ME1 LINE L1 3853 4287 -2139 1542 122 80 28 chr13 96784283 96784571 -22960327 - THE1C LTR MaLR 0 375 73 326 227 67 27 chr13 96784588 96784708 -22960190 + L1ME1 LINE L1 5597 5726 -718 2360 42 0 0 chr13 96784708 96784997 -22959901 + L1PA4 LINE L1 5861 6149 -6 326 227 67 27 chr13 96784997 96785026 -22959872 + L1ME1 LINE L1 5726 5752 -692 1123 292 63 11 chr13 96785046 96785508 -22959390 + L1ME1 LINE L1 5956 6441 -5 210 330 66 0 chr13 96785993 96786084 -22958814 - MIR3 SINE MIR -5 203 107 525 286 75 64 chr13 96786084 96786444 -22958454 + MLT1H LTR MaLR 2 365 -184 381 58 0 0 chr13 96787650 96787702 -22957196 + (TA)n Simple_repeat Simple_repeat 2 53 0 608 197 101 2 chr13 96789439 96789623 -22955275 - MLT1J2 LTR MaLR -242 204 2 21 0 0 0 chr13 96790227 96790248 -22954650 + AT_rich Low_complexity Low_complexity 1 21 0 842 137 0 15 chr13 96790612 96790743 -22954155 + FLAM_C SINE Alu 1 129 -4 366 23 0 0 chr13 96790743 96790753 -22954145 + (TG)n Simple_repeat Simple_repeat 1 53 0 366 23 0 0 chr13 96790753 96790796 -22954102 + (TG)n Simple_repeat Simple_repeat 2 44 0 412 164 0 0 chr13 96790857 96790924 -22953974 + FRAM SINE Alu 33 99 -77 26 0 0 0 chr13 96790953 96790979 -22953919 + AT_rich Low_complexity Low_complexity 1 26 0 304 310 52 40 chr13 96791009 96791183 -22953715 + MLT1J2 LTR MaLR 273 448 -2 207 331 104 13 chr13 96792018 96792172 -22952726 + MIR3 SINE MIR 10 177 -31 2336 105 0 0 chr13 96793037 96793343 -22951555 - AluY SINE Alu -5 306 1 2301 109 39 20 chr13 96793586 96793943 -22950955 - THE1B LTR MaLR 0 364 1 200 296 64 48 chr13 96794018 96794143 -22950755 + L2 LINE L2 3187 3313 0 845 198 27 27 chr13 96795458 96795645 -22949253 + MER5A DNA MER1_type 2 188 -1 889 266 20 5 chr13 96795725 96795924 -22948974 - MLT1G1 LTR MaLR -389 206 5 195 129 0 0 chr13 96796052 96796083 -22948815 + (A)n Simple_repeat Simple_repeat 1 31 0 2389 108 40 6 chr13 96796725 96797077 -22947821 + THE1B LTR MaLR 1 364 0 9893 118 38 36 chr13 96797077 96798651 -22946247 + THE1B-int LTR MaLR 1 1578 -2 2398 126 22 0 chr13 96798653 96799009 -22945889 + THE1B LTR MaLR 1 364 0 2713 173 4 6 chr13 96799243 96799769 -22945129 + L1 LINE L1 4135 4659 -1487 2559 195 71 15 chr13 96799769 96800363 -22944535 - MER50 LTR ERV1 0 734 108 691 232 26 7 chr13 96800375 96800526 -22944372 - MER50 LTR ERV1 -571 163 10 2045 193 7 7 chr13 96800529 96800949 -22943949 + L1 LINE L1 4653 5072 -1074 528 302 68 5 chr13 96800959 96801151 -22943747 - MLT1H LTR MaLR -334 215 12 330 311 61 27 chr13 96801293 96801441 -22943457 - L2 LINE L2 -334 2979 2827 22 35 0 0 chr13 96801562 96801591 -22943307 + AT_rich Low_complexity Low_complexity 1 29 0 1551 167 0 32 chr13 96801787 96802068 -22942830 + AluJo SINE Alu 9 280 -32 207 220 0 0 chr13 96802068 96802118 -22942780 + (CA)n Simple_repeat Simple_repeat 2 51 0 2599 110 11 8 chr13 96803876 96804249 -22940649 + THE1C LTR MaLR 2 375 0 364 363 75 31 chr13 96804942 96805264 -22939634 + L2 LINE L2 2452 2787 -527 298 354 104 58 chr13 96805294 96805706 -22939192 + L2 LINE L2 2841 3271 -1 751 239 13 0 chr13 96807673 96807832 -22937066 + FRAM SINE Alu 2 162 -4 390 263 70 0 chr13 96808319 96808475 -22936423 + L1 LINE L1 4315 4481 -1665 703 244 91 116 chr13 96808629 96808948 -22935950 - MLT1G1 LTR MaLR -283 312 2 245 305 107 26 chr13 96808993 96809265 -22935633 + HAL1b LINE L1 284 577 -771 24 0 0 0 chr13 96809267 96809291 -22935607 + AT_rich Low_complexity Low_complexity 1 24 0 1371 206 4 4 chr13 96809349 96809621 -22935277 + AluJo SINE Alu 1 272 -40 47 67 0 0 chr13 96809637 96809726 -22935172 + AT_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr13 96810416 96810438 -22934460 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr13 96810640 96810674 -22934224 + AT_rich Low_complexity Low_complexity 1 34 0 543 337 88 25 chr13 96810736 96811089 -22933809 + HAL1b LINE L1 167 541 -807 29 70 0 0 chr13 96811129 96811186 -22933712 + AT_rich Low_complexity Low_complexity 1 57 0 346 314 8 8 chr13 96811246 96811367 -22933531 + CT-rich Low_complexity Low_complexity 2 122 0 2269 63 0 11 chr13 96811432 96811755 -22933143 + AluY SINE Alu 1 320 0 1805 125 10 34 chr13 96812289 96812584 -22932314 - AluJb SINE Alu -24 288 1 342 312 79 21 chr13 96812812 96813001 -22931897 - MLT1J LTR MaLR -241 270 71 2009 150 0 0 chr13 96813599 96813893 -22931005 - AluSx SINE Alu -18 294 1 2080 104 0 24 chr13 96813978 96814266 -22930632 + AluSx SINE Alu 1 281 -31 180 0 0 0 chr13 96814273 96814293 -22930605 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 37 0 0 0 chr13 96814361 96814398 -22930500 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr13 96814896 96814932 -22929966 + AT_rich Low_complexity Low_complexity 1 36 0 425 339 94 11 chr13 96815025 96815376 -22929522 + L1MC4a LINE L1 2971 3350 -2796 1818 117 0 29 chr13 96815569 96815843 -22929055 + AluSx SINE Alu 34 299 -13 855 286 105 60 chr13 96815897 96816558 -22928340 + L1MC4a LINE L1 3688 4421 -1725 1570 226 60 50 chr13 96816558 96817058 -22927840 - MLT1D LTR MaLR 0 505 1 855 286 105 60 chr13 96817058 96817506 -22927392 + L1MC4a LINE L1 4421 4847 -1299 1145 288 80 24 chr13 96817889 96818462 -22926436 + L1MC4a LINE L1 5254 5858 -1950 200 296 0 0 chr13 96818650 96818694 -22926204 + L2 LINE L2 3228 3271 -42 243 258 43 0 chr13 96818835 96818928 -22925970 + L1M4 LINE L1 4494 4590 -1556 2032 153 14 19 chr13 96818928 96819294 -22925604 + THE1B LTR MaLR 1 364 0 291 167 42 56 chr13 96819397 96819469 -22925429 - MIR SINE MIR -129 133 63 26 50 0 0 chr13 96820496 96820536 -22924362 + AT_rich Low_complexity Low_complexity 1 40 0 1800 171 7 3 chr13 96820733 96821025 -22923873 - AluSx SINE Alu -19 293 1 21 0 0 0 chr13 96821451 96821472 -22923426 + AT_rich Low_complexity Low_complexity 1 21 0 357 269 29 0 chr13 96821999 96822103 -22922795 + L1MC5 LINE L1 7324 7430 -531 545 321 69 5 chr13 96823612 96823830 -22921068 - MIR SINE MIR 0 262 31 185 289 0 0 chr13 96824151 96824203 -22920695 - MIR3 SINE MIR -3 205 154 184 372 35 0 chr13 96824548 96824634 -22920264 - L2 LINE L2 -192 3080 2992 471 255 120 38 chr13 96826919 96827103 -22917795 - L1ME1 LINE L1 -6 6229 6031 553 176 48 8 chr13 96827112 96827237 -22917661 - L1ME1 LINE L1 -258 5977 5848 394 176 27 38 chr13 96827256 96827589 -22917309 + (TA)n Simple_repeat Simple_repeat 1 329 0 1311 243 48 18 chr13 96827650 96828050 -22916848 - L1ME1 LINE L1 -501 5734 5323 * 1543 239 12 61 chr13 96828035 96828596 -22916302 - L1ME1 LINE L1 -1686 4529 3996 1140 133 5 0 chr13 96828591 96828779 -22916119 - L1 LINE L1 -1319 4827 4639 * 1045 235 73 0 chr13 96828792 96829081 -22915817 - L1ME1 LINE L1 -2224 3991 3682 32 0 0 0 chr13 96829083 96829115 -22915783 + AT_rich Low_complexity Low_complexity 1 32 0 1025 161 11 0 chr13 96829183 96829357 -22915541 - L1PB1 LINE L1 -17 6134 5959 6743 56 2 1 chr13 96829359 96830204 -22914694 - L1PA7 LINE L1 -11 6143 5298 2099 242 39 24 chr13 96830198 96830746 -22914152 - L1ME1 LINE L1 -2542 3673 3108 * 1597 167 31 3 chr13 96830746 96831034 -22913864 - AluJb SINE Alu -16 296 1 2099 242 39 24 chr13 96831034 96831278 -22913620 - L1ME1 LINE L1 -3107 3108 2869 272 247 0 0 chr13 96831297 96831370 -22913528 - L1ME1 LINE L1 -3623 2592 2520 249 65 0 0 chr13 96831566 96831597 -22913301 - THE1A LTR MaLR 0 355 325 1925 306 94 32 chr13 96831611 96833097 -22911801 - L1ME1 LINE L1 -4564 1832 254 5723 110 14 23 chr13 96833099 96834080 -22910818 + L1PA10 LINE L1 5194 6166 -2 213 217 0 0 chr13 96834828 96834874 -22910024 + T-rich Low_complexity Low_complexity 3 48 0 203 318 34 57 chr13 96835169 96835257 -22909641 + L2 LINE L2 3144 3229 -43 883 223 33 73 chr13 96835751 96836024 -22908874 + MLT1D LTR MaLR 1 262 -243 2388 196 48 20 chr13 96836053 96836409 -22908489 + L1MA9 LINE L1 5586 5964 -348 2373 90 0 0 chr13 96836409 96836719 -22908179 + AluY SINE Alu 1 310 -1 2388 196 48 20 chr13 96836719 96836902 -22907996 + L1MA9 LINE L1 5964 6140 -172 208 353 68 8 chr13 96837564 96837697 -22907201 - L2 LINE L2 -557 2757 2617 751 227 55 31 chr13 96838245 96838501 -22906397 - MIR SINE MIR 0 262 1 2143 123 0 0 chr13 96839153 96839455 -22905443 + AluSx SINE Alu 1 302 -10 1643 262 122 55 chr13 96839471 96840487 -22904411 - HAL1 LINE L1 -158 2349 1266 1657 271 149 39 chr13 96840605 96841197 -22903701 - HAL1 LINE L1 -1427 1080 352 2345 81 3 0 chr13 96841197 96841504 -22903394 - AluY SINE Alu -3 308 1 1657 271 149 39 chr13 96841504 96841818 -22903080 - HAL1 LINE L1 -2155 352 74 254 285 159 13 chr13 96843061 96843212 -22901686 + MIR SINE MIR 46 218 -44 250 250 19 0 chr13 96843358 96843410 -22901488 - MIR3 SINE MIR -15 193 141 195 42 0 0 chr13 96843967 96843991 -22900907 + (A)n Simple_repeat Simple_repeat 1 24 0 41 36 0 0 chr13 96844764 96844819 -22900079 + AT_rich Low_complexity Low_complexity 1 55 0 185 293 53 40 chr13 96846287 96846362 -22898536 + MIR3 SINE MIR 85 160 -48 29 78 0 0 chr13 96846524 96846588 -22898310 + AT_rich Low_complexity Low_complexity 1 64 0 204 250 241 9 chr13 96847089 96847205 -22897693 - MIR SINE MIR -55 207 65 258 320 20 40 chr13 96849001 96849101 -22895797 - MIR3 SINE MIR -27 181 84 238 208 28 28 chr13 96849646 96849718 -22895180 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 1347 276 101 36 chr13 96849860 96850700 -22894198 - L1MC4a LINE L1 -1542 6546 5652 3459 208 56 38 chr13 96851043 96851126 -22893772 - L1MCa LINE L1 -4386 2040 1960 1472 134 5 5 chr13 96851126 96851342 -22893556 + AluSg/x SINE Alu 82 297 -15 3459 208 56 38 chr13 96851342 96853379 -22891519 - L1MCa LINE L1 -4466 1960 1 22 35 0 0 chr13 96854811 96854840 -22890058 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr13 96854911 96854955 -22889943 + AT_rich Low_complexity Low_complexity 1 44 0 287 353 7 29 chr13 96856048 96856184 -22888714 + MER91A DNA MER1_type 21 153 -43 259 215 329 0 chr13 96858127 96858206 -22886692 - MIR SINE MIR -46 216 112 31 26 0 0 chr13 96858206 96858244 -22886654 + AT_rich Low_complexity Low_complexity 1 38 0 5633 173 35 11 chr13 96858244 96860243 -22884655 - L1PA16 LINE L1 -9 6157 4125 1601 175 0 33 chr13 96860245 96860548 -22884350 - AluJo SINE Alu -19 293 1 210 279 29 0 chr13 96860548 96860616 -22884282 - MIR SINE MIR -147 115 46 201 254 0 0 chr13 96861519 96861578 -22883320 + (TA)n Simple_repeat Simple_repeat 1 59 0 1796 179 150 5 chr13 96861760 96862134 -22882764 + MSTC LTR MaLR 1 428 0 1684 129 23 56 chr13 96862256 96862558 -22882340 + AluSx SINE Alu 5 296 -16 234 0 0 0 chr13 96863079 96863105 -22881793 + (TA)n Simple_repeat Simple_repeat 2 27 0 1081 249 81 21 chr13 96864282 96864715 -22880183 + L1MC4 LINE L1 7432 7890 -152 261 143 18 0 chr13 96864726 96864782 -22880116 + L1MC4 LINE L1 7985 8041 -1 6263 27 7 12 chr13 96866393 96867163 -22877735 - L1PA4 LINE L1 0 6155 5390 3956 49 2 0 chr13 96867162 96867675 -22877223 + L1P LINE L1 3218 3731 -2415 * 436 213 11 0 chr13 96869904 96869998 -22874900 + MER5A DNA MER1_type 10 104 -85 272 216 258 21 chr13 96870489 96870586 -22874312 + MIR SINE MIR 133 252 -10 25 51 0 0 chr13 96870745 96870784 -22874114 + AT_rich Low_complexity Low_complexity 1 39 0 415 349 17 17 chr13 96871919 96872091 -22872807 + MIR SINE MIR 48 219 -43 1977 147 6 40 chr13 96872265 96872611 -22872287 - MER1B DNA MER1_type 0 337 4 403 252 163 79 chr13 96873071 96873500 -22871398 - MLT1J LTR MaLR -46 465 1 212 226 38 0 chr13 96874835 96874888 -22870010 + CT-rich Low_complexity Low_complexity 3 57 0 239 250 0 47 chr13 96876012 96876076 -22868822 - MER5A DNA MER1_type -60 129 69 2695 213 148 53 chr13 96877207 96878332 -22866566 - L1M4 LINE L1 -943 6014 4783 450 299 94 42 chr13 96878552 96878840 -22866058 - L1M4 LINE L1 -6546 313 11 775 42 0 0 chr13 96879009 96879104 -22865794 - L1PA5 LINE L1 -212 5942 5848 1600 57 33 0 chr13 96879104 96879316 -22865582 + L1PA5 LINE L1 5936 6154 0 1100 174 85 23 chr13 96879361 96879666 -22865232 + MER33 DNA MER1_type 1 324 0 1516 81 0 89 chr13 96879864 96880099 -22864799 + AluY SINE Alu 1 214 -97 2004 100 42 7 chr13 96881008 96881297 -22863601 + AluSp SINE Alu 1 299 -14 28 61 0 0 chr13 96881362 96881411 -22863487 + AT_rich Low_complexity Low_complexity 1 49 0 6258 88 12 8 chr13 96882410 96883299 -22861599 - L1PA10 LINE L1 -5 6163 5271 260 286 15 23 chr13 96883506 96883623 -22861275 + MIR SINE MIR 76 191 -67 386 320 72 31 chr13 96883717 96883911 -22860987 - MIR SINE MIR -41 221 20 250 276 13 26 chr13 96884740 96884816 -22860082 - MIR SINE MIR -147 115 41 456 304 14 14 chr13 96886406 96886544 -22858354 - MIR3 SINE MIR -6 202 65 198 329 89 0 chr13 96886869 96886948 -22857950 + MIR SINE MIR 28 113 -149 1871 151 143 11 chr13 96887402 96887779 -22857119 + MSTA LTR MaLR 2 428 0 264 279 115 10 chr13 96887911 96888015 -22856883 - MIR SINE MIR -24 238 124 468 150 0 0 chr13 96889455 96889535 -22855363 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 373 316 126 0 chr13 96889962 96890136 -22854762 + MIR SINE MIR 61 256 -6 236 325 41 8 chr13 96890324 96890447 -22854451 + MARNA DNA Mariner 103 229 -357 254 299 111 14 chr13 96890599 96890743 -22854155 + MARNA DNA Mariner 367 524 -62 21 36 0 0 chr13 96893165 96893193 -22851705 + AT_rich Low_complexity Low_complexity 1 28 0 1727 159 40 14 chr13 96893259 96893629 -22851269 - L1MA7 LINE L1 0 6291 5912 21 0 0 0 chr13 96894468 96894489 -22850409 + AT_rich Low_complexity Low_complexity 1 21 0 2189 98 3 0 chr13 96895259 96895545 -22849353 + AluSp SINE Alu 1 287 -26 793 249 115 14 chr13 96895618 96895835 -22849063 - MIR SINE MIR -10 252 14 253 296 28 0 chr13 96896271 96896342 -22848556 - L2 LINE L2 -2 3270 3198 483 18 0 0 chr13 96896381 96896437 -22848461 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 201 108 0 0 chr13 96896486 96896523 -22848375 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 233 183 67 219 chr13 96896760 96896984 -22847914 - MIR SINE MIR -64 198 9 318 294 61 30 chr13 96897300 96897531 -22847367 + L1ME LINE L1 5111 5348 -798 530 293 52 13 chr13 96897667 96897896 -22847002 + L1ME LINE L1 5553 5790 -331 21 0 0 0 chr13 96897964 96897985 -22846913 + AT_rich Low_complexity Low_complexity 1 21 0 192 258 202 11 chr13 96898049 96898138 -22846760 + L2 LINE L2 3204 3309 -4 27 0 0 0 chr13 96899585 96899612 -22845286 + AT_rich Low_complexity Low_complexity 1 27 0 1582 181 0 30 chr13 96899784 96900082 -22844816 - AluJo SINE Alu -12 300 12 8709 198 23 5 chr13 96900232 96900585 -22844313 - L1PA16 LINE L1 -9 6157 5812 2454 95 43 0 chr13 96900585 96900934 -22843964 - THE1B LTR MaLR 0 364 1 8709 198 23 5 chr13 96900934 96903429 -22841469 - L1PA16 LINE L1 -354 5812 3254 856 221 64 34 chr13 96904013 96904311 -22840587 + L1 LINE L1 5000 5306 -840 24 77 0 0 chr13 96904643 96904695 -22840203 + AT_rich Low_complexity Low_complexity 1 52 0 344 197 39 8 chr13 96904723 96904850 -22840048 + (TA)n Simple_repeat Simple_repeat 1 131 0 257 200 0 0 chr13 96905074 96905129 -22839769 + L1M4 LINE L1 4487 4541 -1605 1017 259 170 37 chr13 96905154 96905531 -22839367 - HAL1 LINE L1 -1088 1419 1094 1625 186 34 6 chr13 96905531 96905859 -22839039 - MER44D DNA MER2_type 0 609 3 1017 259 170 37 chr13 96905859 96906103 -22838795 - HAL1 LINE L1 -1413 1094 715 893 218 0 0 chr13 96906313 96906478 -22838420 + FRAM SINE Alu 2 166 0 364 257 42 62 chr13 96906478 96906576 -22838322 - MLT1I LTR MaLR -241 168 72 3012 169 49 39 chr13 96906576 96907135 -22837763 - MER73 LTR ERVL 0 644 77 2191 93 3 26 chr13 96907135 96907447 -22837451 - AluY SINE Alu -6 305 1 3012 169 49 39 chr13 96907447 96907525 -22837373 - MER73 LTR ERVL -567 77 1 364 257 42 62 chr13 96907525 96907570 -22837328 - MLT1I LTR MaLR -337 72 28 1240 283 66 82 chr13 96907609 96907759 -22837139 - HAL1 LINE L1 -1816 691 540 2293 126 81 27 chr13 96907759 96908165 -22836733 + MSTA LTR MaLR 1 428 0 1240 283 66 82 chr13 96908165 96908431 -22836467 - HAL1 LINE L1 -1967 540 288 1971 148 3 0 chr13 96908431 96908729 -22836169 - AluSx SINE Alu -13 299 1 1240 283 66 82 chr13 96908729 96909004 -22835894 - HAL1 LINE L1 -2219 288 10 280 320 10 0 chr13 96910753 96910850 -22834048 + MIR SINE MIR 109 206 -56 204 340 0 41 chr13 96910906 96911003 -22833895 - MIR SINE MIR -86 122 30 1778 120 204 8 chr13 96911350 96911708 -22833190 - MSTA LTR MaLR 0 428 1 1890 157 33 25 chr13 96912762 96913125 -22831773 + THE1C LTR MaLR 8 373 -2 26 64 0 0 chr13 96913293 96913340 -22831558 + AT_rich Low_complexity Low_complexity 1 47 0 1257 249 63 39 chr13 96913415 96913796 -22831102 + MLT2B1 LTR ERVL 1 390 -130 216 97 0 0 chr13 96914560 96914591 -22830307 + (CA)n Simple_repeat Simple_repeat 2 32 0 368 208 42 31 chr13 96915047 96915143 -22829755 + MIR3 SINE MIR 111 207 -1 180 200 0 0 chr13 96915734 96915779 -22829119 + (CAATT)n Simple_repeat Simple_repeat 5 49 0 229 239 0 0 chr13 96916093 96916139 -22828759 + L2 LINE L2 3259 3304 -9 1184 264 47 34 chr13 96916492 96916939 -22827959 + LTR40c LTR ERVL 1 453 -12 1043 272 72 38 chr13 96917154 96917753 -22827145 + L1MC5 LINE L1 7299 7917 -44 2771 225 39 20 chr13 96918006 96918758 -22826140 + L1 LINE L1 4134 4899 -1247 1505 133 25 0 chr13 96918758 96918998 -22825900 + L1MB2 LINE L1 5668 5913 -258 480 35 0 0 chr13 96919003 96919061 -22825837 + (TA)n Simple_repeat Simple_repeat 2 59 0 525 159 79 24 chr13 96919318 96919444 -22825454 - L1P LINE L1 -2833 3313 3181 2758 77 16 3 chr13 96919445 96919823 -22825075 + L1PA13 LINE L1 5774 6156 -7 348 207 45 9 chr13 96920355 96920466 -22824432 - L1MCc LINE L1 -4887 1536 1422 2310 77 3 19 chr13 96920616 96920926 -22823972 - AluY SINE Alu -6 305 1 2169 80 59 7 chr13 96921030 96921318 -22823580 - AluSp SINE Alu -10 303 1 358 334 92 43 chr13 96921889 96922257 -22822641 - HAL1 LINE L1 -904 1603 1218 372 303 13 0 chr13 96922723 96922878 -22822020 + L1MC/D LINE L1 4902 5058 -1088 372 323 61 50 chr13 96923055 96923334 -22821564 + L1MC/D LINE L1 5265 5546 -2262 21 36 0 0 chr13 96923367 96923395 -22821503 + AT_rich Low_complexity Low_complexity 1 28 0 231 208 0 0 chr13 96923565 96923618 -22821280 + L1ME LINE L1 5772 5824 -297 354 385 32 3 chr13 96924968 96925264 -22819634 + L2 LINE L2 2474 2849 -465 2147 124 7 0 chr13 96926093 96926399 -22818499 - AluSx SINE Alu -4 308 1 21 71 0 0 chr13 96926648 96926690 -22818208 + AT_rich Low_complexity Low_complexity 1 42 0 251 203 58 0 chr13 96927021 96927090 -22817808 + MIR SINE MIR 69 141 -67 633 278 101 60 chr13 96927147 96927532 -22817366 + MLT1K LTR MaLR 183 583 -5 23 0 0 0 chr13 96928371 96928394 -22816504 + AT_rich Low_complexity Low_complexity 1 23 0 1093 164 5 51 chr13 96929898 96930112 -22814786 - L1PB4 LINE L1 -4 6152 5949 1816 219 216 9 chr13 96932321 96932859 -22812039 - MLT1E1 LTR MaLR -5 649 1 302 247 37 0 chr13 96932862 96932943 -22811955 + L1MC/D LINE L1 5681 5764 -2044 441 272 13 57 chr13 96935711 96935869 -22809029 + MIR SINE MIR 102 252 -10 201 231 192 29 chr13 96935989 96936093 -22808805 - MIR SINE MIR -61 201 81 508 311 101 9 chr13 96937148 96937367 -22807531 + MIR SINE MIR 21 259 -3 22 56 0 0 chr13 96938384 96938420 -22806478 + AT_rich Low_complexity Low_complexity 1 36 0 1774 132 24 3 chr13 96938471 96938760 -22806138 + AluSx SINE Alu 9 303 -9 1654 315 77 26 chr13 96940629 96941755 -22803143 + L2 LINE L2 2119 3309 -4 1948 207 23 40 chr13 96942158 96942690 -22802208 - L1MA9 LINE L1 -6 6306 5784 3457 155 52 27 chr13 96942690 96943425 -22801473 - Tigger3(Golem) DNA MER2_type 0 3029 2277 3012 193 26 86 chr13 96945515 96946239 -22798659 - MER54B LTR ERVL -112 681 1 515 219 0 55 chr13 96946239 96946367 -22798531 - MER57-int LTR ERV1 -689 6848 6728 3215 56 32 1 chr13 96947223 96947677 -22797221 + LTR10C LTR ERV1 57 591 0 341 260 53 20 chr13 96947677 96947827 -22797071 + HERVI LTR ERV1 2 156 -7629 311 211 58 39 chr13 96948105 96948209 -22796689 + HERVI LTR ERV1 505 610 -6039 342 202 140 0 chr13 96948772 96948886 -22796012 + L1MCa LINE L1 1371 1500 -4926 2070 129 156 8 chr13 96949066 96949439 -22795459 + MSTA LTR MaLR 1 428 0 1085 189 20 16 chr13 96949439 96949693 -22795205 + MSTA-int LTR MaLR 1 255 -1396 401 246 0 32 chr13 96949694 96949820 -22795078 + AluSp SINE Alu 1 122 -191 2115 160 16 11 chr13 96949920 96950289 -22794609 + MER41E LTR ERV1 142 512 0 242 288 38 56 chr13 96950289 96950449 -22794449 + L1MC/D LINE L1 5764 5920 -1888 378 0 0 0 chr13 96951092 96951134 -22793764 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 36 0 0 chr13 96953250 96953278 -22791620 + AT_rich Low_complexity Low_complexity 1 28 0 1700 169 0 37 chr13 96954104 96954399 -22790499 - AluJo SINE Alu -24 288 5 615 292 66 81 chr13 96954457 96954985 -22789913 - LTR67 LTR ERVL -5 552 33 560 247 119 53 chr13 96955274 96955501 -22789397 + MIR SINE MIR 11 252 -10 1489 198 21 10 chr13 96955749 96956037 -22788861 - AluJo SINE Alu -21 291 1 180 0 0 0 chr13 96956870 96956890 -22788008 + (T)n Simple_repeat Simple_repeat 1 20 0 638 171 9 9 chr13 96957041 96957152 -22787746 - MER41E LTR ERV1 -401 111 1 180 0 0 0 chr13 96957197 96957217 -22787681 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2125 130 0 6 chr13 96957220 96957535 -22787363 - AluSq SINE Alu 0 313 1 502 286 62 29 chr13 96957600 96957810 -22787088 - L1MC/D LINE L1 -2059 5749 5533 1237 161 75 119 chr13 96958138 96958292 -22786606 + MER2 DNA MER2_type 1 160 -184 1491 192 47 4 chr13 96958292 96958568 -22786330 - AluJo SINE Alu -24 288 1 1237 161 75 119 chr13 96958568 96958773 -22786125 + MER2 DNA MER2_type 160 344 0 1806 174 20 8 chr13 96959187 96959543 -22785355 + MER46B DNA MER2_type 1 235 -1 304 288 0 0 chr13 96959583 96959649 -22785249 - MER63 DNA MER1_type 0 1061 996 237 108 0 0 chr13 96959651 96959688 -22785210 + (T)n Simple_repeat Simple_repeat 1 37 0 405 252 122 0 chr13 96959809 96959916 -22784982 - MER63 DNA MER1_type -316 746 1 253 240 0 0 chr13 96961193 96961243 -22783655 + MLT1H1 LTR MaLR 154 203 -352 186 380 20 0 chr13 96961324 96961424 -22783474 - L3b LINE CR1 -316 1267 1166 30 27 0 0 chr13 96962921 96962958 -22781940 + AT_rich Low_complexity Low_complexity 1 37 0 1425 142 131 18 chr13 96963514 96963789 -22781109 + AluSg1 SINE Alu 1 306 -3 1407 196 45 11 chr13 96963851 96964137 -22780761 + AluJo SINE Alu 1 296 -16 294 230 23 0 chr13 96964212 96964299 -22780599 + (TA)n Simple_repeat Simple_repeat 2 90 0 252 0 0 0 chr13 96966363 96966391 -22778507 + (TA)n Simple_repeat Simple_repeat 1 28 0 2642 34 0 0 chr13 96967247 96967543 -22777355 + AluY SINE Alu 1 296 -15 2123 104 44 0 chr13 96968954 96969251 -22775647 - AluSg SINE Alu 0 310 1 1701 186 52 31 chr13 96970639 96971021 -22773877 - MLT1B LTR MaLR 0 390 1 180 0 0 0 chr13 96971030 96971050 -22773848 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2330 47 0 0 chr13 96971056 96971330 -22773568 - AluY SINE Alu -36 275 2 342 0 0 0 chr13 96971616 96971654 -22773244 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 348 24 0 0 chr13 96971653 96971694 -22773204 + (TG)n Simple_repeat Simple_repeat 1 41 0 392 294 28 36 chr13 96972360 96972572 -22772326 + MIR SINE MIR 24 229 -33 1224 190 16 0 chr13 96973422 96973664 -22771234 - L1MB2 LINE L1 -2 6169 5924 776 223 10 20 chr13 96973933 96974135 -22770763 + L1MA9 LINE L1 6083 6282 -30 694 182 66 33 chr13 96974299 96974480 -22770418 - MER5A DNA MER1_type -2 187 1 1815 142 62 22 chr13 96975866 96976190 -22768708 - MER1B DNA MER1_type 0 337 1 182 300 33 78 chr13 96976213 96976303 -22768595 - MIR SINE MIR -148 114 29 659 185 0 16 chr13 96976400 96976530 -22768368 - MLT1A1 LTR MaLR -50 340 192 1925 155 3 10 chr13 96976689 96976998 -22767900 + AluSx SINE Alu 1 307 -5 390 273 15 0 chr13 96977844 96977976 -22766922 - HAL1 LINE L1 -82 2425 2292 390 273 15 0 chr13 96978005 96978137 -22766761 - HAL1 LINE L1 -82 2425 2292 589 284 52 0 chr13 96978166 96978377 -22766521 - HAL1 LINE L1 -82 2425 2204 190 286 0 0 chr13 96978521 96978563 -22766335 - L2 LINE L2 -1893 1421 1380 452 311 77 89 chr13 96979853 96980280 -22764618 - L2 LINE L2 -1 3271 2850 456 19 0 0 chr13 96980774 96980827 -22764071 + (TG)n Simple_repeat Simple_repeat 2 54 0 1931 145 48 9 chr13 96981187 96981518 -22763380 - THE1C LTR MaLR 0 375 32 1526 164 38 49 chr13 96982008 96982373 -22762525 + MER46B DNA MER2_type 1 236 0 23 33 0 0 chr13 96983296 96983326 -22761572 + AT_rich Low_complexity Low_complexity 1 30 0 200 284 11 11 chr13 96984678 96984773 -22760125 + (TA)n Simple_repeat Simple_repeat 1 95 0 1279 153 28 9 chr13 96988142 96988357 -22756541 - AluJb SINE Alu -11 301 83 268 357 63 42 chr13 96989108 96989251 -22755647 + L2 LINE L2 3116 3261 -11 203 339 65 16 chr13 96989702 96989826 -22755072 - L2 LINE L2 -32 3240 3111 295 349 56 0 chr13 96989942 96990068 -22754830 + L2 LINE L2 2243 2375 -939 1298 193 6 66 chr13 96990146 96990478 -22754420 + AluJb SINE Alu 1 312 0 476 167 33 0 chr13 96990498 96990588 -22754310 - MLT1A1 LTR MaLR -25 349 257 224 29 0 29 chr13 96990624 96990658 -22754240 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1707 72 81 5 chr13 96990669 96990892 -22754006 - AluY SINE Alu -25 286 47 1374 130 102 20 chr13 96990897 96991143 -22753755 - AluSg SINE Alu -44 266 1 570 210 87 22 chr13 96991153 96991291 -22753607 - MLT1A1 LTR MaLR -218 147 1 442 366 79 24 chr13 96991291 96991583 -22753315 + L2 LINE L2 2380 2687 -627 938 126 157 0 chr13 96992442 96992601 -22752297 + L1PA10 LINE L1 5970 6153 -15 849 174 82 22 chr13 96992626 96992810 -22752088 + AluJo SINE Alu 118 312 0 195 95 119 0 chr13 96992830 96992872 -22752026 + L2 LINE L2 3005 3051 -221 218 361 49 28 chr13 96993124 96993268 -22751630 - MIR3 SINE MIR -13 195 49 1552 185 0 41 chr13 96993587 96993901 -22750997 - AluJo SINE Alu -7 305 5 244 289 67 0 chr13 96994723 96994813 -22750085 + MIR SINE MIR 157 252 -10 2551 57 0 0 chr13 96995524 96995825 -22749073 + AluY SINE Alu 1 301 -10 2147 124 3 0 chr13 96995895 96996194 -22748704 + AluSp SINE Alu 1 300 -13 21 0 0 0 chr13 96997164 96997185 -22747713 + AT_rich Low_complexity Low_complexity 1 21 0 1084 269 23 10 chr13 96998107 96998412 -22746486 + MER93a LTR ERV1 94 402 0 457 308 146 5 chr13 96998412 96998597 -22746301 + MIR SINE MIR 52 262 0 198 232 172 30 chr13 96998701 96998800 -22746098 - L2 LINE L2 -2643 671 559 2270 92 17 0 chr13 96999030 96999323 -22745575 - AluSg SINE Alu -12 298 1 654 197 58 72 chr13 96999759 96999967 -22744931 - MER31B LTR ERV1 -9 457 253 298 248 8 107 chr13 97000347 97000420 -22744478 + MER5B DNA MER1_type 67 125 -53 207 0 0 0 chr13 97000420 97000443 -22744455 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 298 248 8 107 chr13 97000443 97000490 -22744408 + MER5B DNA MER1_type 125 175 -3 23 54 0 0 chr13 97002649 97002686 -22742212 + AT_rich Low_complexity Low_complexity 1 37 0 819 144 139 5 chr13 97002914 97003116 -22741782 + L1MA8 LINE L1 6061 6289 -2 2469 54 0 3 chr13 97003160 97003454 -22741444 + AluY SINE Alu 1 293 -18 2332 101 0 0 chr13 97003684 97003990 -22740908 - AluSc SINE Alu -3 306 1 1818 138 44 4 chr13 97004061 97004336 -22740562 - AluSx SINE Alu -26 286 1 441 268 0 0 chr13 97005439 97005551 -22739347 - MER94 DNA DNA -18 116 5 389 326 54 21 chr13 97006167 97006446 -22738452 + MER20B DNA MER1_type 191 478 -305 397 323 27 27 chr13 97006785 97006971 -22737927 - L3 LINE CR1 -162 1415 1230 213 304 61 83 chr13 97007050 97007231 -22737667 - L3 LINE CR1 -564 1013 837 22 0 0 0 chr13 97008052 97008074 -22736824 + AT_rich Low_complexity Low_complexity 1 22 0 1080 194 0 0 chr13 97009255 97009425 -22735473 - FAM SINE Alu -5 170 1 405 0 0 0 chr13 97010307 97010352 -22734546 + (TG)n Simple_repeat Simple_repeat 1 45 0 23 54 0 0 chr13 97011192 97011229 -22733669 + AT_rich Low_complexity Low_complexity 1 37 0 302 326 52 15 chr13 97014051 97014186 -22730712 + HAL1 LINE L1 1 140 -2367 630 262 196 80 chr13 97014517 97015513 -22729385 + HAL1 LINE L1 423 1533 -974 * 660 258 169 10 chr13 97015512 97015807 -22729091 + HAL1 LINE L1 1812 2153 -354 23 0 0 0 chr13 97015944 97015967 -22728931 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 97016221 97016244 -22728654 + AT_rich Low_complexity Low_complexity 1 23 0 203 325 38 0 chr13 97017168 97017248 -22727650 - MIR3 SINE MIR 0 208 126 195 244 0 0 chr13 97017503 97017548 -22727350 - MER5C DNA MER1_type 0 324 280 382 249 172 6 chr13 97017579 97017748 -22727150 - MER5C DNA MER1_type -40 284 88 1541 76 80 0 chr13 97017758 97017982 -22726916 - L1PA13 LINE L1 -19 6144 5903 2489 73 0 10 chr13 97018019 97018333 -22726565 - AluSq SINE Alu -2 311 1 1251 55 0 6 chr13 97018382 97018547 -22726351 - L1PA7 LINE L1 0 6154 5991 188 67 33 0 chr13 97019008 97019038 -22725860 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 4689 91 38 3 chr13 97019438 97020128 -22724770 + L1MA2 LINE L1 5547 6260 -44 306 222 0 0 chr13 97020143 97020206 -22724692 - L1MC4 LINE L1 -1339 6703 6641 28 0 0 0 chr13 97020255 97020283 -22724615 + AT_rich Low_complexity Low_complexity 1 28 0 688 197 14 0 chr13 97021182 97021324 -22723574 + L1PB4 LINE L1 6012 6155 -1 259 333 147 0 chr13 97021515 97021617 -22723281 - L2 LINE L2 -1 3271 3155 432 221 166 6 chr13 97021828 97021985 -22722913 - MER5A DNA MER1_type 0 189 4 210 71 0 0 chr13 97022035 97022063 -22722835 + (CA)n Simple_repeat Simple_repeat 2 29 0 31 26 0 0 chr13 97023336 97023374 -22721524 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 97023613 97023634 -22721264 + AT_rich Low_complexity Low_complexity 1 21 0 2052 136 0 10 chr13 97023985 97024286 -22720612 + AluJb SINE Alu 1 298 -14 311 310 35 76 chr13 97025699 97025833 -22719065 - MER20B DNA MER1_type -594 189 64 1464 207 14 17 chr13 97025833 97026128 -22718770 + AluJo SINE Alu 1 294 -18 311 310 35 76 chr13 97026128 97026190 -22718708 - MER20B DNA MER1_type -719 64 1 5287 164 24 22 chr13 97027349 97029123 -22715775 - L1MA4 LINE L1 -192 6108 4330 1804 160 3 20 chr13 97029123 97029429 -22715469 - AluJb SINE Alu -11 301 1 5287 164 24 22 chr13 97029429 97029552 -22715346 - L1MA4 LINE L1 -1970 4330 4209 399 274 112 44 chr13 97029654 97030049 -22714849 - L1M4 LINE L1 -1175 4971 4534 1946 155 0 13 chr13 97030049 97030358 -22714540 - AluSx SINE Alu -7 305 1 399 274 112 44 chr13 97030358 97030461 -22714437 - L1M4 LINE L1 -1612 4534 4439 421 389 6 6 chr13 97030965 97031145 -22713753 - MIR SINE MIR -71 191 12 194 259 0 37 chr13 97031540 97031594 -22713304 + L2 LINE L2 3216 3267 -5 746 281 37 49 chr13 97032976 97033222 -22711676 - MIR SINE MIR -5 257 15 418 349 92 29 chr13 97034619 97034934 -22709964 - L3 LINE CR1 -112 1465 1131 338 305 43 28 chr13 97035011 97035152 -22709746 + L2 LINE L2 3169 3311 -2 2598 45 3 0 chr13 97035617 97035927 -22708971 - AluY SINE Alu 0 311 1 289 304 262 20 chr13 97035938 97036350 -22708548 - L2 LINE L2 -21 3292 2782 5708 90 29 2 chr13 97036384 97037505 -22707393 - L1PB2 LINE L1 0 6151 4980 497 150 0 0 chr13 97037505 97037585 -22707313 - AluY SINE Alu -7 302 223 1085 103 0 7 chr13 97037585 97037731 -22707167 - AluY SINE Alu -135 176 32 348 312 10 50 chr13 97037823 97037845 -22707053 - L2 LINE L2 -665 2649 2628 2494 116 11 6 chr13 97037845 97038207 -22706691 - THE1B LTR MaLR 0 364 1 348 312 10 50 chr13 97038207 97038383 -22706515 - L2 LINE L2 -686 2628 2459 466 295 79 21 chr13 97040748 97040938 -22703960 + MIR SINE MIR 32 232 -30 210 293 0 0 chr13 97040941 97040999 -22703899 + (TTG)n Simple_repeat Simple_repeat 3 60 0 23 0 0 0 chr13 97041095 97041118 -22703780 + AT_rich Low_complexity Low_complexity 1 23 0 227 220 33 77 chr13 97045603 97045694 -22699204 - MIR SINE MIR -74 188 102 2194 123 3 0 chr13 97045746 97046047 -22698851 + AluSx SINE Alu 1 302 -10 1752 128 7 13 chr13 97047014 97047320 -22697578 + L1MA5A LINE L1 5982 6285 -12 803 207 6 22 chr13 97047663 97047842 -22697056 + L1MB5 LINE L1 5989 6164 -10 26 50 0 0 chr13 97047880 97047920 -22696978 + AT_rich Low_complexity Low_complexity 1 40 0 840 316 112 41 chr13 97048107 97049033 -22695865 - L2 LINE L2 -301 3012 2021 2395 57 0 45 chr13 97049943 97050257 -22694641 - AluY SINE Alu -11 300 1 225 342 36 18 chr13 97050968 97051079 -22693819 - L2 LINE L2 -189 3083 2971 261 315 66 70 chr13 97051236 97051751 -22693147 - L2 LINE L2 -568 2746 2234 1437 185 74 4 chr13 97053157 97053427 -22691471 + AluJo SINE Alu 1 289 -23 1617 176 28 0 chr13 97053659 97053948 -22690950 + AluJo SINE Alu 1 297 -15 758 283 57 0 chr13 97053953 97054165 -22690733 - MIR SINE MIR -10 252 29 1679 166 52 0 chr13 97054569 97054859 -22690039 - AluJb SINE Alu -7 305 1 317 228 63 0 chr13 97054938 97055017 -22689881 + MIR SINE MIR 75 158 -104 21 71 0 0 chr13 97055077 97055119 -22689779 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr13 97058268 97058295 -22686603 + AT_rich Low_complexity Low_complexity 1 27 0 195 139 0 0 chr13 97058686 97058722 -22686176 + (T)n Simple_repeat Simple_repeat 1 36 0 7523 24 19 9 chr13 97058724 97059687 -22685211 - L1PA3 LINE L1 0 6155 5190 21 0 0 0 chr13 97059992 97060013 -22684885 + AT_rich Low_complexity Low_complexity 1 21 0 379 268 142 0 chr13 97060307 97060434 -22684464 - MLT1L LTR MaLR -22 593 449 433 270 76 47 chr13 97061383 97061594 -22683304 - L2 LINE L2 -37 3276 3060 180 185 111 19 chr13 97062282 97062336 -22682562 + MIR SINE MIR 34 92 -116 252 261 61 18 chr13 97063876 97063987 -22680911 - MER5A DNA MER1_type -24 165 39 21 36 0 0 chr13 97065751 97065779 -22679119 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 97066760 97066781 -22678117 + AT_rich Low_complexity Low_complexity 1 21 0 386 243 107 12 chr13 97068405 97068539 -22676359 - MER20B DNA MER1_type -2 781 626 2060 118 7 0 chr13 97068539 97068835 -22676063 + AluSq SINE Alu 1 298 -15 386 243 107 12 chr13 97068835 97068869 -22676029 - MER20B DNA MER1_type -157 626 597 252 234 0 0 chr13 97068924 97068971 -22675927 - MER20B DNA MER1_type -722 61 15 * 376 167 0 0 chr13 97068967 97069021 -22675877 - FRAM/FAM SINE Alu -99 76 23 409 344 48 21 chr13 97071628 97071817 -22673081 - MIR3 SINE MIR -11 197 4 21 0 0 0 chr13 97072027 97072048 -22672850 + AT_rich Low_complexity Low_complexity 1 21 0 1661 183 0 17 chr13 97073230 97073525 -22671373 - AluJb SINE Alu -22 290 1 525 319 103 40 chr13 97074877 97075592 -22669306 - L2 LINE L2 -1 3312 2538 29 28 0 0 chr13 97075795 97075831 -22669067 + AT_rich Low_complexity Low_complexity 1 36 0 1228 245 103 32 chr13 97076665 97077087 -22667811 - MLT1C LTR MaLR 0 467 19 2773 71 3 3 chr13 97077164 97077529 -22667369 - L1PA8 LINE L1 -3 6169 5805 451 280 84 33 chr13 97078003 97078217 -22666681 - MIR SINE MIR -25 237 13 573 270 85 42 chr13 97078622 97078881 -22666017 + L2 LINE L2 3020 3289 -24 30 0 0 0 chr13 97079052 97079082 -22665816 + AT_rich Low_complexity Low_complexity 1 30 0 210 71 0 0 chr13 97080355 97080383 -22664515 + (TG)n Simple_repeat Simple_repeat 2 29 0 413 230 197 7 chr13 97080438 97080590 -22664308 + MER5A DNA MER1_type 9 189 0 2272 86 0 30 chr13 97081018 97081322 -22663576 + AluY SINE Alu 2 296 -15 230 160 20 0 chr13 97081367 97081417 -22663481 + (TATG)n Simple_repeat Simple_repeat 2 52 0 281 115 0 16 chr13 97084874 97084935 -22659963 + (TA)n Simple_repeat Simple_repeat 2 61 0 255 31 0 0 chr13 97084935 97084967 -22659931 + (GA)n Simple_repeat Simple_repeat 2 33 0 1800 140 0 25 chr13 97084967 97085245 -22659653 - AluSg SINE Alu -39 271 1 189 0 0 0 chr13 97085434 97085455 -22659443 + (TC)n Simple_repeat Simple_repeat 2 22 0 197 327 0 0 chr13 97085706 97085761 -22659137 + L2 LINE L2 3209 3263 -9 243 0 0 0 chr13 97086595 97086622 -22658276 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2188 99 0 17 chr13 97088083 97088408 -22656490 + AluSg SINE Alu 1 320 0 675 290 13 38 chr13 97088418 97088656 -22656242 + MIR SINE MIR 31 262 0 1337 233 86 17 chr13 97088841 97088988 -22655910 - L1M3 LINE L1 -441 5739 5604 330 175 0 0 chr13 97088988 97089051 -22655847 - L1MB8 LINE L1 -6 6172 6110 1337 233 86 17 chr13 97089051 97089329 -22655569 - L1M3 LINE L1 -576 5604 5280 199 176 0 0 chr13 97089431 97089465 -22655433 - L2 LINE L2 -25 3247 3214 377 352 113 30 chr13 97090438 97090668 -22654230 - MIR SINE MIR 0 262 14 309 89 0 0 chr13 97090854 97090899 -22653999 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 342 17 0 chr13 97091137 97091257 -22653641 + L2 LINE L2 3150 3271 -1 21 0 0 0 chr13 97091319 97091340 -22653558 + AT_rich Low_complexity Low_complexity 1 21 0 216 97 0 0 chr13 97092033 97092064 -22652834 + (TTTCC)n Simple_repeat Simple_repeat 4 34 0 261 292 90 35 chr13 97092093 97092237 -22652661 - L2 LINE L2 -7 3306 3155 1555 148 58 16 chr13 97092241 97092552 -22652346 + L1MA2 LINE L1 5981 6304 0 314 264 39 101 chr13 97092810 97092963 -22651935 + L2 LINE L2 3079 3217 -96 306 0 0 0 chr13 97092963 97092997 -22651901 + (TG)n Simple_repeat Simple_repeat 2 35 0 314 264 39 101 chr13 97092997 97093051 -22651847 + L2 LINE L2 3217 3273 -40 180 0 0 0 chr13 97093488 97093508 -22651390 + (T)n Simple_repeat Simple_repeat 1 20 0 463 322 88 9 chr13 97093709 97093936 -22650962 - MIR SINE MIR -6 256 12 290 274 0 0 chr13 97094212 97094285 -22650613 + MIR3 SINE MIR 125 197 -11 22 0 0 0 chr13 97094740 97094762 -22650136 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr13 97096264 97096315 -22648583 + AT_rich Low_complexity Low_complexity 1 51 0 225 347 74 8 chr13 97097195 97097316 -22647582 + MIR3 SINE MIR 74 202 -6 334 249 172 48 chr13 97097546 97097755 -22647143 - MLT1H1 LTR MaLR 0 549 322 656 267 29 12 chr13 97097818 97097990 -22646908 - MLT1H1 LTR MaLR -380 175 1 482 209 0 0 chr13 97098064 97098155 -22646743 - MER117 DNA MER1_type -102 95 5 933 233 79 112 chr13 97098479 97099166 -22645732 + L1MC4 LINE L1 7362 8025 -17 193 261 100 39 chr13 97099526 97099656 -22645242 + MIR SINE MIR 50 187 -75 247 235 10 61 chr13 97100572 97100670 -22644228 + MER117 DNA MER1_type 105 197 0 252 279 0 0 chr13 97101474 97101535 -22643363 - MIR SINE MIR -4 258 198 2067 136 0 7 chr13 97103516 97103825 -22641073 + AluSx SINE Alu 3 309 -3 2045 145 0 3 chr13 97104169 97104473 -22640425 + AluSx SINE Alu 1 303 -9 317 327 96 0 chr13 97106275 97106379 -22638519 + L2 LINE L2 3159 3272 0 536 280 140 14 chr13 97106854 97107061 -22637837 + MIR SINE MIR 1 233 -29 323 272 126 21 chr13 97107315 97107643 -22637255 - L1MC/D LINE L1 -639 5482 5292 473 280 26 31 chr13 97108176 97108195 -22636703 - MIR SINE MIR -55 207 189 2200 126 0 8 chr13 97108195 97108551 -22636347 - L1MA2 LINE L1 0 6304 5952 473 280 26 31 chr13 97108551 97108727 -22636171 - MIR SINE MIR -73 189 16 22 35 0 0 chr13 97109026 97109055 -22635843 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 97109637 97109662 -22635236 + AT_rich Low_complexity Low_complexity 1 25 0 36 23 0 0 chr13 97109886 97109929 -22634969 + AT_rich Low_complexity Low_complexity 1 43 0 1155 137 24 14 chr13 97109930 97110141 -22634757 - L1MA2 LINE L1 0 6304 6092 238 263 29 34 chr13 97110660 97110835 -22634063 + (TTATA)n Simple_repeat Simple_repeat 3 176 0 415 301 138 36 chr13 97112095 97112513 -22632385 - L2 LINE L2 -245 3068 2592 400 294 283 3 chr13 97112527 97112891 -22632007 - L2 LINE L2 0 3313 2848 225 213 227 0 chr13 97114310 97114385 -22630513 - L1ME4a LINE L1 -75 6046 5955 326 320 149 0 chr13 97114803 97114978 -22629920 + MIR SINE MIR 2 202 -60 983 293 90 25 chr13 97115873 97116238 -22628660 - LTR16A LTR ERVL -5 445 57 282 29 0 0 chr13 97116402 97116437 -22628461 + (CAT)n Simple_repeat Simple_repeat 2 36 0 823 226 72 9 chr13 97116821 97117042 -22627856 + MER96B DNA MER1_type? 1 235 -182 324 318 8 48 chr13 97118151 97118277 -22626621 - L1MC4 LINE L1 -1308 6734 6614 247 312 73 37 chr13 97120457 97120566 -22624332 - L2 LINE L2 -2 3270 3158 2623 247 51 10 chr13 97120822 97121745 -22623153 - L1M4 LINE L1 -2848 3298 2338 646 170 0 7 chr13 97121747 97121882 -22623016 + CT-rich Low_complexity Low_complexity 4 137 0 340 280 64 16 chr13 97123931 97124056 -22620842 + MIR3 SINE MIR 67 197 -11 574 101 13 0 chr13 97124223 97124302 -22620596 - MADE1 DNA Mariner 0 80 1 4800 181 41 36 chr13 97124649 97125623 -22619275 - MER45B DNA AcHobo -61 979 1 2292 252 21 4 chr13 97125767 97126286 -22618612 + MLT1F1 LTR MaLR 12 539 -28 1978 179 48 0 chr13 97126388 97126746 -22618152 + MSTA LTR MaLR 54 428 0 867 315 87 30 chr13 97126951 97127386 -22617512 + L2 LINE L2 2853 3312 -1 388 310 79 38 chr13 97127767 97128057 -22616841 - MLT1J2 LTR MaLR -16 434 133 1240 170 14 9 chr13 97129099 97129322 -22615576 - AluJo SINE Alu -45 267 44 321 345 0 28 chr13 97129535 97129677 -22615221 + MLT1I LTR MaLR 24 161 -248 382 282 69 84 chr13 97129702 97129976 -22614922 - L1MC4 LINE L1 -2153 5655 5385 2182 128 0 6 chr13 97129976 97130289 -22614609 - AluY SINE Alu 0 311 1 382 282 69 84 chr13 97130289 97130347 -22614551 - L1MC4 LINE L1 -2423 5385 5328 322 266 0 11 chr13 97130390 97130484 -22614414 + LTR67 LTR ERVL 50 142 -415 277 253 0 0 chr13 97130888 97130967 -22613931 + C-rich Low_complexity Low_complexity 1 79 0 189 344 80 8 chr13 97132330 97132455 -22612443 + MIR SINE MIR 58 191 -71 646 128 7 108 chr13 97132974 97133122 -22611776 + L1MA8 LINE L1 6155 6287 -4 224 331 22 15 chr13 97133224 97133360 -22611538 + MIR SINE MIR 124 260 -2 1420 123 9 0 chr13 97133469 97133681 -22611217 - Tigger1 DNA MER2_type 0 2418 2205 * 1511 152 7 74 chr13 97133680 97133990 -22610908 - Tigger1 DNA MER2_type -172 2246 1958 32 0 0 0 chr13 97134379 97134411 -22610487 + AT_rich Low_complexity Low_complexity 1 32 0 1799 176 0 13 chr13 97134421 97134723 -22610175 + AluJo SINE Alu 2 299 -13 250 233 178 0 chr13 97134923 97135013 -22609885 - MLT1J2-int LTR MaLR -56 1679 1574 589 206 200 61 chr13 97135488 97135549 -22609349 + MLT1H LTR MaLR 26 77 -472 1558 184 34 17 chr13 97135549 97135843 -22609055 + AluJo SINE Alu 1 299 -13 589 206 200 61 chr13 97135843 97136182 -22608716 + MLT1H LTR MaLR 77 549 0 329 294 47 0 chr13 97136382 97136467 -22608431 - MIR3 SINE MIR -31 177 89 28 48 0 0 chr13 97136831 97136873 -22608025 + AT_rich Low_complexity Low_complexity 1 42 0 2078 105 41 7 chr13 97136962 97137256 -22607642 + AluSc SINE Alu 1 304 -5 518 86 12 0 chr13 97137914 97137995 -22606903 + (TC)n Simple_repeat Simple_repeat 1 82 0 239 269 32 21 chr13 97138571 97138664 -22606234 + GA-rich Low_complexity Low_complexity 2 95 0 718 196 16 2 chr13 97139286 97139419 -22605479 + MLT1I LTR MaLR 80 210 -199 463 225 125 8 chr13 97139465 97139585 -22605313 + MLT1I LTR MaLR 276 409 0 335 300 0 0 chr13 97139608 97139688 -22605210 - L2 LINE L2 -706 2608 2529 241 238 40 126 chr13 97140375 97140526 -22604372 + L3 LINE CR1 846 983 -594 513 156 0 0 chr13 97141751 97141828 -22603070 - MADE1 DNA Mariner -3 77 1 21 36 0 0 chr13 97142291 97142319 -22602579 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr13 97142443 97142464 -22602434 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr13 97144774 97144796 -22600102 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 969 278 104 90 chr13 97144804 97145049 -22599849 - L1MEd LINE L1 -4971 1148 908 2343 107 0 0 chr13 97145049 97145357 -22599541 - AluSg SINE Alu -2 308 1 969 278 104 90 chr13 97145357 97145746 -22599152 - L1MEd LINE L1 -5211 908 526 2265 114 0 7 chr13 97145746 97146054 -22598844 - AluSx SINE Alu -6 306 1 969 278 104 90 chr13 97146054 97146498 -22598400 - L1MEd LINE L1 -5593 526 54 1362 156 0 0 chr13 97146844 97147055 -22597843 + AluY SINE Alu 1 211 -100 299 152 0 0 chr13 97147055 97147101 -22597797 + FLAM_A SINE Alu 77 122 -11 2235 138 0 0 chr13 97147338 97147650 -22597248 - AluSx SINE Alu 0 312 1 879 102 20 54 chr13 97147707 97147854 -22597044 - L1MA3 LINE L1 0 6305 6164 2285 103 3 10 chr13 97148350 97148662 -22596236 + AluSx SINE Alu 1 310 -2 276 271 10 62 chr13 97149168 97149264 -22595634 - MIR3 SINE MIR -7 201 111 850 200 12 12 chr13 97150767 97150937 -22593961 - AluJo/FRAM SINE Alu -9 303 134 1790 163 7 3 chr13 97150937 97151232 -22593666 - AluJo SINE Alu -15 297 2 1710 245 117 21 chr13 97152087 97152598 -22592300 + MLT1E LTR MaLR 31 590 -3 2145 157 38 22 chr13 97152679 97153048 -22591850 - THE1C LTR MaLR 0 375 1 326 286 50 0 chr13 97153122 97153241 -22591657 - MIR SINE MIR -11 251 127 353 278 0 0 chr13 97153248 97153338 -22591560 + MIR SINE MIR 163 252 -10 1101 294 54 48 chr13 97153369 97153909 -22590989 + L3 LINE CR1 654 1196 -381 542 227 50 28 chr13 97154040 97154181 -22590717 + MIR3 SINE MIR 33 176 -32 1685 183 0 23 chr13 97154377 97154683 -22590215 + AluJb SINE Alu 1 299 -13 415 234 21 57 chr13 97154698 97154839 -22590059 - MER103 DNA DNA -16 150 15 1667 181 11 3 chr13 97155746 97156033 -22588865 - AluJb SINE Alu -23 289 1 2510 62 0 7 chr13 97156807 97157114 -22587784 - AluY SINE Alu -3 308 4 260 116 0 47 chr13 97157617 97157703 -22587195 + (TA)n Simple_repeat Simple_repeat 1 82 0 1088 259 112 52 chr13 97159293 97159775 -22585123 - MLT1J LTR MaLR 0 511 1 309 259 93 0 chr13 97160165 97160273 -22584625 + L2 LINE L2 3191 3308 -5 1206 275 107 72 chr13 97160387 97161366 -22583532 + L1MEd LINE L1 16 1029 -5090 1226 265 105 15 chr13 97161370 97161778 -22583120 - LTR16C LTR ERVL -11 480 36 382 202 0 12 chr13 97161819 97161903 -22582995 + L1MEd LINE L1 1019 1101 -5018 1097 264 46 9 chr13 97161905 97162250 -22582648 + L1ME3A LINE L1 5605 5962 -208 753 222 27 43 chr13 97162264 97162449 -22582449 - MIR SINE MIR -3 259 78 2364 114 104 65 chr13 97162594 97162636 -22582262 - MSTA LTR MaLR 0 428 389 1813 149 13 32 chr13 97162636 97162952 -22581946 + AluSq SINE Alu 1 310 -3 2364 114 104 65 chr13 97162952 97163321 -22581577 - MSTA LTR MaLR -39 389 1 346 222 261 11 chr13 97164024 97164200 -22580698 + L1ME3A LINE L1 5318 5537 -625 1706 231 108 20 chr13 97164206 97164696 -22580202 + L1ME3A LINE L1 5627 6159 -11 227 61 30 0 chr13 97164717 97164750 -22580148 + Alu SINE Alu 256 289 -11 1876 153 37 0 chr13 97164854 97165154 -22579744 + AluSx SINE Alu 1 311 -1 992 124 2 4 chr13 97165475 97165662 -22579236 - L1P5 LINE L1 -659 5495 5307 2257 113 3 3 chr13 97166390 97166699 -22578199 + AluSp SINE Alu 1 309 -4 23 33 0 0 chr13 97166843 97166873 -22578025 + AT_rich Low_complexity Low_complexity 1 30 0 2065 131 3 13 chr13 97167372 97167686 -22577212 + AluSx SINE Alu 1 311 -1 208 245 19 19 chr13 97167691 97167744 -22577154 - MIR SINE MIR -73 135 83 322 364 15 0 chr13 97168927 97169059 -22575839 - MIR3 SINE MIR -8 200 67 * 716 265 40 40 chr13 97169040 97169288 -22575610 + MIR SINE MIR 5 249 -13 222 207 0 0 chr13 97171029 97171087 -22573811 + T-rich Low_complexity Low_complexity 2 59 0 188 156 0 0 chr13 97171573 97171605 -22573293 + L2 LINE L2 2992 3023 -249 2233 99 0 32 chr13 97171628 97171942 -22572956 - AluSc SINE Alu -5 304 1 934 282 162 9 chr13 97171997 97172330 -22572568 - L2 LINE L2 0 3313 2930 214 282 205 0 chr13 97172383 97172500 -22572398 + L2 LINE L2 3170 3310 -3 * 284 273 195 8 chr13 97172499 97172627 -22572271 + MIR3 SINE MIR 9 160 -48 261 0 0 0 chr13 97173524 97173553 -22571345 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 24 0 24 chr13 97173553 97173566 -22571332 + AT_rich Low_complexity Low_complexity 1 13 -27 2456 61 0 3 chr13 97173566 97173860 -22571038 - AluY SINE Alu -16 295 3 23 24 0 24 chr13 97173860 97173887 -22571011 + AT_rich Low_complexity Low_complexity 13 40 0 2030 116 0 0 chr13 97174964 97175239 -22569659 - AluSg1 SINE Alu -34 275 1 1787 150 61 25 chr13 97175431 97175792 -22569106 - THE1C LTR MaLR 0 375 2 2539 69 0 16 chr13 97176383 97176747 -22568151 + MER4A LTR ERV1 1 358 -306 1999 128 3 0 chr13 97176814 97177156 -22567742 + AluSx SINE Alu 1 343 0 241 206 48 0 chr13 97177294 97177357 -22567541 + L1MB2 LINE L1 6103 6168 -3 838 187 27 23 chr13 97177366 97177585 -22567313 - L1M4 LINE L1 -1284 4862 4643 26 50 0 0 chr13 97177690 97177730 -22567168 + AT_rich Low_complexity Low_complexity 1 40 0 998 172 43 9 chr13 97178728 97178960 -22565938 + L1MA7 LINE L1 6048 6287 -4 858 148 0 0 chr13 97179470 97179592 -22565306 - FLAM_C SINE Alu -20 123 2 811 167 0 8 chr13 97180122 97180254 -22564644 + FLAM_C SINE Alu 1 131 -12 876 152 0 0 chr13 97180601 97180726 -22564172 + FLAM_C SINE Alu 2 126 -17 2422 62 3 0 chr13 97180746 97181036 -22563862 + AluY SINE Alu 1 291 -20 1057 226 63 38 chr13 97181752 97182039 -22562859 + AluJo SINE Alu 1 294 -8 374 150 0 0 chr13 97182130 97182190 -22562708 - FLAM SINE Alu -16 117 58 424 140 0 108 chr13 97182191 97182284 -22562614 - AluJo SINE Alu -164 148 66 278 300 26 37 chr13 97182457 97182647 -22562251 - LTR16C LTR ERVL 0 491 304 6157 29 0 0 chr13 97183126 97183941 -22560957 - L1PA3 LINE L1 -144 6011 5197 3007 32 0 0 chr13 97183941 97184314 -22560584 + L1P LINE L1 4586 4958 -1188 199 266 47 31 chr13 97185615 97185679 -22559219 - MIR3 SINE MIR -36 172 108 24 32 0 0 chr13 97187779 97187810 -22557088 + AT_rich Low_complexity Low_complexity 1 31 0 208 234 36 9 chr13 97189638 97189749 -22555149 + GA-rich Low_complexity Low_complexity 1 114 0 370 208 229 0 chr13 97190704 97190800 -22554098 + MIR SINE MIR 74 191 -71 2163 130 0 0 chr13 97191452 97191753 -22553145 - AluSc SINE Alu -8 301 1 1736 189 0 3 chr13 97191856 97192163 -22552735 - AluJo SINE Alu -6 306 1 14447 142 12 11 chr13 97193578 97195993 -22548905 + Tigger1 DNA MER2_type 1 2417 -1 1821 111 49 55 chr13 97195993 97196318 -22548580 + THE1B LTR MaLR 1 323 -41 627 177 0 0 chr13 97196318 97196474 -22548424 + AluSp/q SINE Alu 188 343 0 327 120 0 0 chr13 97196475 97196525 -22548373 + THE1B LTR MaLR 326 375 0 321 350 32 13 chr13 97196599 97196756 -22548142 + MIR SINE MIR 71 230 -32 258 32 0 0 chr13 97197372 97197403 -22547495 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr13 97197423 97197446 -22547452 + AT_rich Low_complexity Low_complexity 1 23 0 7408 41 6 0 chr13 97197452 97198555 -22546343 - L1PA5 LINE L1 -6 6148 5044 426 125 0 0 chr13 97198556 97198612 -22546286 - AluJb SINE Alu -44 268 213 339 355 42 42 chr13 97198884 97199171 -22545727 - L2 LINE L2 -504 2810 2524 22 35 0 0 chr13 97199544 97199573 -22545325 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr13 97200939 97200965 -22543933 + (T)n Simple_repeat Simple_repeat 1 26 0 2081 134 0 0 chr13 97201079 97201386 -22543512 + AluSg SINE Alu 3 309 -1 317 263 62 0 chr13 97202452 97202532 -22542366 + L2 LINE L2 3229 3313 0 330 171 0 0 chr13 97204642 97204712 -22540186 + GA-rich Low_complexity Low_complexity 2 71 0 2921 186 61 6 chr13 97204712 97205351 -22539547 + MER63C DNA MER1_type 84 757 -173 415 226 75 75 chr13 97205752 97205951 -22538947 - MER58C DNA MER1_type -16 199 1 1432 203 84 3 chr13 97207174 97207495 -22537403 + MER7A DNA MER2_type 1 345 -1 204 338 0 0 chr13 97208091 97208159 -22536739 + L2 LINE L2 3245 3312 -1 2280 70 28 0 chr13 97208570 97208857 -22536041 + AluSq SINE Alu 1 295 -18 962 78 0 31 chr13 97208980 97209109 -22535789 - AluSc SINE Alu -184 125 1 601 346 102 16 chr13 97209800 97210230 -22534668 - L2 LINE L2 -502 2812 2346 1205 252 33 15 chr13 97210382 97210715 -22534183 + MER58B DNA MER1_type 2 340 -1 6871 108 63 151 chr13 97212490 97214374 -22530524 - pTR5 LTR ERV1 0 2438 383 496 163 51 0 chr13 97215567 97215665 -22529233 - MLT1C LTR MaLR 0 467 365 1713 149 44 33 chr13 97215738 97215871 -22529027 - MLT1C LTR MaLR -101 366 236 2098 132 65 8 chr13 97215871 97216226 -22528672 + THE1C LTR MaLR 1 375 0 1713 149 44 33 chr13 97216226 97216454 -22528444 - MLT1C LTR MaLR -231 236 1 355 325 85 45 chr13 97216454 97216808 -22528090 - MLT1I LTR MaLR -12 397 30 1756 182 0 23 chr13 97218080 97218388 -22526510 - AluJo SINE Alu -11 301 1 187 306 0 130 chr13 97220621 97220729 -22524169 - MIR3 SINE MIR -31 177 84 10440 153 37 10 chr13 97222943 97225290 -22519608 - Tigger1 DNA MER2_type -1 2417 1 328 380 7 13 chr13 97225374 97225524 -22519374 + L2 LINE L2 3161 3309 -4 242 372 54 0 chr13 97225936 97226084 -22518814 - MIR SINE MIR -78 184 29 1682 177 3 31 chr13 97226587 97226904 -22517994 - AluJo SINE Alu -4 308 1 328 285 79 61 chr13 97228385 97228550 -22516348 - L1M4 LINE L1 -885 5261 5094 1193 251 62 70 chr13 97228651 97229182 -22515716 - L1M4 LINE L1 -1020 5126 4600 3475 269 59 24 chr13 97229226 97230240 -22514658 - L1M4 LINE L1 -2091 4055 2965 2136 77 30 40 chr13 97230240 97230537 -22514361 + AluY SINE Alu 1 294 -17 3475 269 59 24 chr13 97230537 97231109 -22513789 - L1M4 LINE L1 -3181 2965 2414 5383 195 137 30 chr13 97231217 97232553 -22512345 - MER52A LTR ERV1 -8 1747 269 275 241 0 0 chr13 97233012 97233070 -22511828 - MER52A LTR ERV1 -1697 58 1 266 353 8 8 chr13 97233126 97233245 -22511653 - L1MDb LINE L1 -5519 890 772 276 291 26 17 chr13 97233696 97233813 -22511085 - L1MDb LINE L1 -5947 449 332 336 273 13 0 chr13 97233885 97233962 -22510936 + FRAM/FAM SINE Alu 1 78 -88 920 199 28 0 chr13 97233962 97234138 -22510760 + AluJo SINE Alu 95 275 -37 246 32 0 0 chr13 97234163 97234194 -22510704 + (CA)n Simple_repeat Simple_repeat 2 32 0 300 91 0 0 chr13 97235272 97235316 -22509582 + (TG)n Simple_repeat Simple_repeat 1 44 0 29 0 0 0 chr13 97236154 97236183 -22508715 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 97236216 97236240 -22508658 + AT_rich Low_complexity Low_complexity 1 24 0 1025 144 0 31 chr13 97238505 97238665 -22506233 + AluSx SINE Alu 1 155 -157 22 35 0 0 chr13 97239315 97239344 -22505554 + AT_rich Low_complexity Low_complexity 1 29 0 2784 247 78 23 chr13 97239506 97241387 -22503511 - L1MB5 LINE L1 -18 6156 4138 247 335 19 87 chr13 97244158 97244319 -22500579 - L2 LINE L2 -217 3055 2906 291 350 127 47 chr13 97244655 97245414 -22499484 - L2 LINE L2 -803 2511 1693 350 254 0 24 chr13 97245517 97245643 -22499255 + MER103 DNA DNA 26 148 -18 2367 93 0 0 chr13 97245709 97246010 -22498888 + AluSc SINE Alu 1 301 -8 1179 134 55 5 chr13 97246266 97246467 -22498431 - L1PA13 LINE L1 -2 6161 5951 22 70 0 0 chr13 97246967 97247010 -22497888 + AT_rich Low_complexity Low_complexity 1 43 0 12368 41 3 0 chr13 97247021 97249299 -22495599 - L1PA5 LINE L1 -7 6147 3866 191 143 0 54 chr13 97249501 97249557 -22495341 + (T)n Simple_repeat Simple_repeat 1 53 0 42045 38 23 1 chr13 97249564 97255583 -22489315 - L1PA2 LINE L1 0 6155 3 978 225 72 17 chr13 97255673 97255909 -22488989 + MIR SINE MIR 1 249 -13 2337 111 44 3 chr13 97257474 97257815 -22487083 + THE1A LTR MaLR 1 355 0 363 60 0 0 chr13 97258137 97258187 -22486711 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 71 0 0 chr13 97260233 97260275 -22484623 + AT_rich Low_complexity Low_complexity 1 42 0 250 364 45 15 chr13 97260275 97260407 -22484491 + L2 LINE L2 3137 3272 0 279 291 36 27 chr13 97260613 97260723 -22484175 - MIR SINE MIR -133 129 19 778 235 16 6 chr13 97261007 97261190 -22483708 + MER82 DNA MER2_type 9 193 -460 252 59 0 0 chr13 97261225 97261259 -22483639 + (GA)n Simple_repeat Simple_repeat 2 35 0 1897 207 36 45 chr13 97261259 97261704 -22483194 + MER82 DNA MER2_type 213 653 0 2322 48 9 78 chr13 97262535 97262868 -22482030 + AluY SINE Alu 1 310 -1 880 267 80 123 chr13 97263732 97264412 -22480486 - L2 LINE L2 0 3313 2661 8138 161 41 10 chr13 97265903 97266728 -22478170 - L1MA4A LINE L1 -35 6268 5470 402 74 0 0 chr13 97266728 97266782 -22478116 + (TA)n Simple_repeat Simple_repeat 2 55 0 8138 161 41 10 chr13 97266782 97268469 -22476429 - L1MA4A LINE L1 -833 5470 3618 2166 108 20 0 chr13 97269652 97269948 -22474950 - AluSq SINE Alu -9 304 3 577 304 22 5 chr13 97270343 97270527 -22474371 + MLT1I LTR MaLR 1 187 -222 206 31 0 31 chr13 97270623 97270655 -22474243 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1039 187 48 151 chr13 97270699 97271116 -22473782 + MLT1A2 LTR MaLR 1 374 0 591 338 36 9 chr13 97271245 97271470 -22473428 + MIR SINE MIR 32 262 0 21 36 0 0 chr13 97273164 97273192 -22471706 + AT_rich Low_complexity Low_complexity 1 28 0 183 100 0 0 chr13 97273742 97273772 -22471126 + (TTA)n Simple_repeat Simple_repeat 1 30 0 309 281 22 36 chr13 97274422 97274561 -22470337 + MIR SINE MIR 76 212 -50 856 237 0 21 chr13 97274666 97274856 -22470042 + MER58A DNA MER1_type 1 186 -38 234 149 170 0 chr13 97274892 97274939 -22469959 + MER58A DNA MER1_type 170 224 0 231 36 0 0 chr13 97277077 97277105 -22467793 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1386 180 28 72 chr13 97277897 97278325 -22466573 + LTR37A LTR ERV1 18 426 0 233 277 0 0 chr13 97278788 97278871 -22466027 - L1MC4 LINE L1 -1324 6718 6636 229 241 35 11 chr13 97278945 97279032 -22465866 - L1MC4 LINE L1 -1339 6703 6615 200 217 50 0 chr13 97279033 97279093 -22465805 + (TA)n Simple_repeat Simple_repeat 1 63 0 336 211 0 0 chr13 97279113 97279189 -22465709 + (TA)n Simple_repeat Simple_repeat 2 77 0 265 209 60 0 chr13 97279231 97279318 -22465580 + (CATA)n Simple_repeat Simple_repeat 1 92 0 328 378 5 10 chr13 97281794 97281987 -22462911 + MER20B DNA MER1_type 98 289 -494 768 137 47 104 chr13 97282880 97283091 -22461807 - L1MA9 LINE L1 -39 6273 6075 2320 91 0 3 chr13 97285298 97285605 -22459293 - AluSg SINE Alu -4 306 1 222 150 0 0 chr13 97285700 97285740 -22459158 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1104 257 90 3 chr13 97286365 97286700 -22458198 - MER63 DNA MER1_type -1 1061 698 312 177 65 0 chr13 97286980 97287042 -22457856 - MLT2C1 LTR ERVL 0 397 332 21 36 0 0 chr13 97287043 97287071 -22457827 + AT_rich Low_complexity Low_complexity 1 28 0 1852 161 10 53 chr13 97287076 97287432 -22457466 - MLT2C1 LTR ERVL -35 429 18 1391 257 145 2 chr13 97287442 97287905 -22456993 - MER119 DNA MER1_type -37 546 18 197 105 0 26 chr13 97288106 97288144 -22456754 + (TG)n Simple_repeat Simple_repeat 2 38 0 685 228 82 0 chr13 97291212 97291370 -22453528 - MER58B DNA MER1_type -36 305 135 2330 170 47 2 chr13 97292017 97292465 -22452433 - L1MB3 LINE L1 -12 6171 5704 22 56 0 0 chr13 97293432 97293468 -22451430 + AT_rich Low_complexity Low_complexity 1 36 0 241 247 118 35 chr13 97293533 97293618 -22451280 - MIR SINE MIR -108 154 63 1125 37 0 0 chr13 97294719 97294855 -22450043 - L1HS LINE L1 0 6155 6020 1481 248 80 50 chr13 97295146 97295485 -22449413 - MER90 LTR ERV1 -18 557 195 2179 118 3 0 chr13 97295485 97295781 -22449117 - AluSp SINE Alu -16 297 1 1481 248 80 50 chr13 97295781 97295977 -22448921 - MER90 LTR ERV1 -380 195 6 22 35 0 0 chr13 97296257 97296286 -22448612 + AT_rich Low_complexity Low_complexity 1 29 0 2874 98 16 35 chr13 97296329 97296821 -22448077 - L1MA5A LINE L1 -1 6296 5814 * 15518 30 3 0 chr13 97296815 97299441 -22445457 - L1PA3 LINE L1 0 6155 3526 2464 156 33 9 chr13 97299447 97299903 -22444995 - L1MA5A LINE L1 -476 5821 5355 21 57 0 0 chr13 97302743 97302778 -22442120 + AT_rich Low_complexity Low_complexity 1 35 0 2083 100 0 56 chr13 97302839 97303158 -22441740 + AluSc SINE Alu 1 301 -8 24 32 0 0 chr13 97304425 97304456 -22440442 + AT_rich Low_complexity Low_complexity 1 31 0 236 213 38 88 chr13 97305309 97305389 -22439509 - MIR SINE MIR -173 89 14 21 0 0 0 chr13 97305938 97305959 -22438939 + AT_rich Low_complexity Low_complexity 1 21 0 213 277 29 88 chr13 97306609 97306746 -22438152 - L2 LINE L2 -15 3298 3170 236 30 30 0 chr13 97308223 97308256 -22436642 + (TCC)n Simple_repeat Simple_repeat 3 36 0 * 303 104 0 0 chr13 97308254 97308302 -22436596 + (TC)n Simple_repeat Simple_repeat 2 49 0 2282 92 0 13 chr13 97309201 97309507 -22435391 + AluSg SINE Alu 1 302 -8 237 132 19 19 chr13 97309533 97309586 -22435312 + L1MC5 LINE L1 7833 7885 -76 1916 108 24 44 chr13 97309654 97309949 -22434949 + AluSx SINE Alu 7 295 -17 22 0 0 0 chr13 97310895 97310917 -22433981 + AT_rich Low_complexity Low_complexity 1 22 0 257 304 35 26 chr13 97311537 97311652 -22433246 - MER5A DNA MER1_type -15 174 59 3258 97 22 44 chr13 97312142 97312185 -22432713 - L1MA1 LINE L1 0 6302 6260 288 77 0 0 chr13 97312185 97312224 -22432674 + (TA)n Simple_repeat Simple_repeat 2 40 0 3258 97 22 44 chr13 97312224 97312724 -22432174 - L1MA1 LINE L1 -42 6260 5771 22 35 0 0 chr13 97313580 97313609 -22431289 + AT_rich Low_complexity Low_complexity 1 29 0 263 288 151 55 chr13 97313829 97314048 -22430850 + MIR SINE MIR 17 256 -6 1568 172 0 40 chr13 97316029 97316326 -22428572 + AluJb SINE Alu 14 298 -14 455 75 0 19 chr13 97316364 97316576 -22428322 + AluY SINE Alu 1 302 -10 198 0 0 0 chr13 97317195 97317217 -22427681 + (TA)n Simple_repeat Simple_repeat 2 23 0 279 295 62 18 chr13 97318263 97318375 -22426523 + MIR SINE MIR 118 234 -28 598 300 48 22 chr13 97318529 97318759 -22426139 - MIR SINE MIR -10 252 20 986 75 0 0 chr13 97319675 97319809 -22425089 - L1PB1 LINE L1 0 6151 6018 2354 110 0 0 chr13 97321432 97321742 -22423156 + AluSg SINE Alu 1 310 0 4819 71 2 0 chr13 97322356 97322976 -22421922 - L1PA7 LINE L1 0 6154 5534 958 107 0 0 chr13 97323282 97323413 -22421485 - AluY SINE Alu -180 131 1 311 276 43 35 chr13 97325077 97325193 -22419705 + MIR SINE MIR 45 161 -101 341 333 148 0 chr13 97326413 97326575 -22418323 + L3 LINE CR1 1312 1497 -80 22 70 0 0 chr13 97326671 97326714 -22418184 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 97326823 97326844 -22418054 + AT_rich Low_complexity Low_complexity 1 21 0 746 228 33 5 chr13 97328183 97328367 -22416531 + MER5A DNA MER1_type 1 189 0 443 283 15 76 chr13 97328859 97329057 -22415841 - L2 LINE L2 -10 3303 3118 22 35 0 0 chr13 97329268 97329297 -22415601 + AT_rich Low_complexity Low_complexity 1 29 0 1108 244 19 25 chr13 97329893 97329918 -22414980 - L1MB8 LINE L1 -12 6166 6142 1575 241 46 26 chr13 97329918 97330375 -22414523 + MLT1C LTR MaLR 2 467 0 1108 244 19 25 chr13 97330375 97330673 -22414225 - L1MB8 LINE L1 -36 6142 5845 2117 115 10 0 chr13 97330802 97331097 -22413801 + AluSx SINE Alu 1 298 -14 814 209 39 6 chr13 97331178 97331360 -22413538 - MER5A DNA MER1_type -1 188 1 2546 249 72 80 chr13 97332020 97333255 -22411643 - MER69B DNA AcHobo 0 1226 2 6848 167 30 13 chr13 97333281 97334727 -22410171 - L1 LINE L1 -1779 4367 2897 2058 192 46 15 chr13 97334715 97335174 -22409724 + L1MA4 LINE L1 5823 6295 -5 * 23 0 0 0 chr13 97335174 97335197 -22409701 + AT_rich Low_complexity Low_complexity 1 23 0 276 200 0 0 chr13 97335214 97335274 -22409624 + GA-rich Low_complexity Low_complexity 3 62 0 1876 181 25 8 chr13 97335808 97336167 -22408731 - MLT1A1 LTR MaLR 0 365 1 438 232 107 18 chr13 97336314 97336426 -22408472 - L2 LINE L2 -1 3312 3191 1721 174 17 0 chr13 97337218 97337511 -22407387 + AluJb SINE Alu 2 299 -13 228 182 0 0 chr13 97339129 97339173 -22405725 + (TG)n Simple_repeat Simple_repeat 1 44 0 2138 113 10 0 chr13 97339204 97339506 -22405392 - AluSq SINE Alu -8 305 1 407 288 58 7 chr13 97339781 97339920 -22404978 - MLT1J LTR MaLR -359 152 7 520 232 149 26 chr13 97340103 97340297 -22404601 + Charlie1 DNA MER1_type 9 226 -2535 * 688 172 8 15 chr13 97340294 97340428 -22404470 + Charlie1 DNA MER1_type 2623 2755 -6 1811 174 7 3 chr13 97340475 97340780 -22404118 - AluJb SINE Alu -6 306 1 23 33 0 0 chr13 97340836 97340866 -22404032 + AT_rich Low_complexity Low_complexity 1 30 0 3448 69 24 0 chr13 97341753 97342217 -22402681 - L1PA13 LINE L1 -1 6162 5688 1392 184 0 8 chr13 97342217 97342483 -22402415 + L1P LINE L1 4804 5067 -1079 397 284 30 37 chr13 97342860 97342994 -22401904 + MIR SINE MIR 36 168 -94 324 239 54 0 chr13 97343029 97343121 -22401777 + MIR SINE MIR 136 232 -30 210 292 15 15 chr13 97343150 97343215 -22401683 + MIR3 SINE MIR 131 195 -13 306 0 0 0 chr13 97344158 97344192 -22400706 + (TG)n Simple_repeat Simple_repeat 2 35 0 1873 135 188 6 chr13 97344287 97344649 -22400249 - MSTA LTR MaLR 0 428 1 651 198 156 0 chr13 97344871 97345038 -22399860 - L1MC4 LINE L1 0 8042 7850 183 349 0 0 chr13 97345436 97345499 -22399399 + MIR3 SINE MIR 93 155 -53 931 18 0 0 chr13 97346680 97346790 -22398108 + L1PA2 LINE L1 6046 6155 0 2458 62 0 3 chr13 97346975 97347281 -22397617 + AluY SINE Alu 4 308 -3 746 266 102 22 chr13 97347411 97347685 -22397213 - MER46C DNA MER2_type -39 299 4 1031 148 0 0 chr13 97347986 97348141 -22396757 - AluSg/x SINE Alu -23 287 133 264 148 0 0 chr13 97348151 97348212 -22396686 + (TA)n Simple_repeat Simple_repeat 2 62 0 927 103 8 0 chr13 97348212 97348338 -22396560 - AluY SINE Alu -184 127 1 32 43 0 0 chr13 97348750 97348796 -22396102 + AT_rich Low_complexity Low_complexity 1 46 0 382 272 132 49 chr13 97349469 97349796 -22395102 + L1MC4 LINE L1 5609 5962 -1846 1766 74 0 31 chr13 97349943 97350199 -22394699 - L1PA13 LINE L1 0 6163 5916 1698 224 0 16 chr13 97350421 97350792 -22394106 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr13 97350928 97350956 -22393942 + AT_rich Low_complexity Low_complexity 1 28 0 270 157 10 0 chr13 97352334 97352389 -22392509 - MLT2C1 LTR ERVL 0 397 353 320 191 12 0 chr13 97352389 97352473 -22392425 + (TA)n Simple_repeat Simple_repeat 2 86 0 253 231 22 44 chr13 97352479 97352570 -22392328 + L1MC4 LINE L1 6615 6703 -1339 238 217 0 0 chr13 97352542 97352588 -22392310 - L1MC4 LINE L1 -1339 6703 6658 * 1239 286 69 18 chr13 97352626 97353073 -22391825 - MLT2B1 LTR ERVL -50 470 1 1786 176 74 45 chr13 97353303 97353654 -22391244 + Tigger2a DNA MER2_type 1 367 -2341 2166 100 0 0 chr13 97353654 97353963 -22390935 + AluSc SINE Alu 1 309 0 1786 176 74 45 chr13 97353963 97354032 -22390866 + Tigger2a DNA MER2_type 367 433 -1 341 230 0 0 chr13 97354321 97354395 -22390503 + MER116 DNA Mariner 2 75 -5 240 308 62 28 chr13 97354401 97354544 -22390354 - MIR3 SINE MIR -63 145 5 2240 94 0 0 chr13 97356473 97356770 -22388128 + AluSg SINE Alu 14 310 0 1836 142 22 0 chr13 97356901 97357201 -22387697 + AluSx SINE Alu 5 310 0 1682 191 10 0 chr13 97358788 97359097 -22385801 - AluJo SINE Alu 0 312 1 626 261 76 0 chr13 97359221 97359378 -22385520 - MIR SINE MIR -17 245 77 181 356 121 27 chr13 97359725 97359874 -22385024 + L3 LINE CR1 113 275 -1302 183 221 44 73 chr13 97360087 97360155 -22384743 - L2 LINE L2 0 3313 3248 2087 99 10 29 chr13 97361342 97361656 -22383242 + AluSx SINE Alu 1 308 -4 362 247 66 99 chr13 97361690 97361872 -22383026 + MIR SINE MIR 87 262 0 324 367 37 0 chr13 97361885 97361994 -22382904 + L3 LINE CR1 1014 1126 -451 339 232 134 9 chr13 97362188 97362300 -22382598 - MER94 DNA DNA -1 133 8 233 355 90 20 chr13 97362310 97362510 -22382388 + L3 LINE CR1 1321 1534 -43 23 0 0 0 chr13 97362757 97362780 -22382118 + AT_rich Low_complexity Low_complexity 1 23 0 321 244 55 71 chr13 97363109 97363236 -22381662 - L2 LINE L2 -2 3311 3187 22 80 0 0 chr13 97364207 97364257 -22380641 + AT_rich Low_complexity Low_complexity 1 50 0 1912 126 14 0 chr13 97365003 97365172 -22379726 - AluSx SINE Alu 0 302 126 231 36 0 0 chr13 97365172 97365200 -22379698 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1912 126 14 0 chr13 97365200 97365328 -22379570 - AluSx SINE Alu -176 126 1 244 254 0 17 chr13 97366102 97366161 -22378737 + MER112 DNA MER1_type 8 65 -195 252 236 36 0 chr13 97366196 97366251 -22378647 - L2 LINE L2 0 3272 3216 301 241 18 0 chr13 97366348 97366460 -22378438 + (TA)n Simple_repeat Simple_repeat 2 115 0 567 266 68 19 chr13 97366470 97366677 -22378221 + MER112 DNA MER1_type 44 260 0 2241 75 0 0 chr13 97368008 97368288 -22376610 + AluY SINE Alu 1 280 -31 387 0 0 0 chr13 97368291 97368334 -22376564 + (CA)n Simple_repeat Simple_repeat 2 44 0 413 19 19 0 chr13 97369300 97369354 -22375544 + (CA)n Simple_repeat Simple_repeat 2 56 0 601 243 180 19 chr13 97370159 97370365 -22374533 + MIR SINE MIR 13 251 -11 24 77 0 0 chr13 97370449 97370501 -22374397 + AT_rich Low_complexity Low_complexity 1 52 0 233 313 88 0 chr13 97371638 97371718 -22373180 + MIR SINE MIR 160 246 -16 314 336 45 9 chr13 97373116 97373226 -22371672 + L2 LINE L2 3199 3312 -1 279 257 0 0 chr13 97373992 97374093 -22370805 + (TA)n Simple_repeat Simple_repeat 2 102 0 1750 161 98 0 chr13 97374611 97374927 -22369971 - MER7A DNA MER2_type -1 345 1 1340 210 31 7 chr13 97375233 97375523 -22369375 - AluJo SINE Alu -2 310 14 275 192 39 0 chr13 97376861 97376913 -22367985 - MLT1I LTR MaLR -68 341 288 323 297 61 14 chr13 97377234 97377382 -22367516 - MER5A DNA MER1_type -3 186 32 310 339 16 16 chr13 97377277 97377398 -22367500 + MER5A DNA MER1_type 63 183 -6 * 2214 132 42 5 chr13 97377527 97377913 -22366985 - L1MA4A LINE L1 -12 6291 5892 225 258 32 16 chr13 97378011 97378073 -22366825 - MIR SINE MIR -8 254 192 304 122 0 28 chr13 97378119 97378185 -22366713 - L1P2 LINE L1 -325 5829 5770 5742 145 20 24 chr13 97378411 97379237 -22365661 - L1MA6 LINE L1 0 6300 5479 2347 103 0 0 chr13 97379237 97379548 -22365350 - AluY SINE Alu 0 311 1 5742 145 20 24 chr13 97379548 97379818 -22365080 - L1MA6 LINE L1 -821 5479 5209 817 258 0 6 chr13 97381989 97382167 -22362731 - MER45A DNA AcHobo 0 178 2 1671 146 182 22 chr13 97382272 97382310 -22362588 - MSTA LTR MaLR 0 428 397 2301 107 0 0 chr13 97382310 97382610 -22362288 + AluSx SINE Alu 1 300 -12 1671 146 182 22 chr13 97382610 97382795 -22362103 - MSTA LTR MaLR -31 397 243 3043 53 3 0 chr13 97382795 97383171 -22361727 - L1PA7 LINE L1 0 6154 5778 1671 146 182 22 chr13 97383171 97383315 -22361583 - MSTA LTR MaLR -185 243 1 21 89 0 0 chr13 97384525 97384581 -22360317 + AT_rich Low_complexity Low_complexity 1 56 0 465 278 22 28 chr13 97385701 97385881 -22359017 + MIR SINE MIR 84 262 0 255 250 0 0 chr13 97386224 97386276 -22358622 + L2 LINE L2 3258 3309 -4 29 84 0 0 chr13 97386492 97386563 -22358335 + AT_rich Low_complexity Low_complexity 1 71 0 2067 162 12 40 chr13 97386603 97386842 -22358056 + MLT1B LTR MaLR 1 226 -164 1988 140 46 3 chr13 97386842 97387171 -22357727 - MER61A LTR ERV1 0 343 1 2067 162 12 40 chr13 97387171 97387332 -22357566 + MLT1B LTR MaLR 226 390 0 226 231 44 88 chr13 97387504 97387595 -22357303 + L2 LINE L2 3179 3265 -7 1510 162 79 11 chr13 97388116 97388381 -22356517 + AluJb SINE Alu 1 287 -25 318 106 0 0 chr13 97388381 97388428 -22356470 + (TA)n Simple_repeat Simple_repeat 1 47 0 1510 162 79 11 chr13 97388428 97388440 -22356458 + AluJb SINE Alu 287 297 -15 1959 107 37 0 chr13 97389154 97389468 -22355430 + AluSx SINE Alu 1 324 0 21 0 0 0 chr13 97389918 97389939 -22354959 + AT_rich Low_complexity Low_complexity 1 21 0 235 234 18 54 chr13 97390240 97390351 -22354547 - MLT1J LTR MaLR -10 501 395 237 333 32 21 chr13 97390529 97390622 -22354276 - MLT1L LTR MaLR -332 283 190 190 375 86 16 chr13 97391111 97391239 -22353659 + L3 LINE CR1 1391 1527 -50 478 239 35 98 chr13 97392310 97392634 -22352264 + MLT1I LTR MaLR 95 538 -4 31 0 0 0 chr13 97393768 97393799 -22351099 + AT_rich Low_complexity Low_complexity 1 31 0 843 285 159 44 chr13 97394724 97395484 -22349414 - L2 LINE L2 0 3313 2451 1463 217 103 7 chr13 97395587 97396025 -22348873 + Charlie4a DNA MER1_type 28 507 -1 489 323 170 0 chr13 97396093 97396316 -22348582 - MIR SINE MIR 0 262 2 762 198 0 0 chr13 97396500 97396672 -22348226 + CT-rich Low_complexity Low_complexity 4 175 0 216 220 0 20 chr13 97396674 97396724 -22348174 + T-rich Low_complexity Low_complexity 2 50 0 495 292 24 43 chr13 97397166 97397375 -22347523 + MIR SINE MIR 33 237 -25 3277 158 24 8 chr13 97397787 97398374 -22346524 - L1PA16 LINE L1 -2 6164 5569 1495 223 108 50 chr13 97399100 97399602 -22345296 - MER34 LTR ERV1 -1 541 11 376 311 82 5 chr13 97400149 97400345 -22344553 + L1ME4a LINE L1 5651 5861 -260 405 0 0 0 chr13 97400557 97400602 -22344296 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 190 184 70 140 chr13 97403862 97403976 -22340922 + L2 LINE L2 1513 1618 -1696 195 341 101 14 chr13 97404569 97404707 -22340191 - L3 LINE CR1 -10 1567 1418 286 161 129 0 chr13 97404877 97404939 -22339959 - MER116 DNA Mariner -5 75 6 1622 181 7 3 chr13 97404959 97405241 -22339657 + AluJo SINE Alu 1 283 -29 962 173 6 11 chr13 97407585 97407764 -22337134 + MER5B DNA MER1_type 1 178 0 24 0 0 0 chr13 97408038 97408062 -22336836 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 97409307 97409336 -22335562 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr13 97409366 97409404 -22335494 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 49 0 0 chr13 97409406 97409447 -22335451 + AT_rich Low_complexity Low_complexity 1 41 0 302 333 47 35 chr13 97409724 97409895 -22335003 - L3b LINE CR1 -134 1449 1277 521 110 0 0 chr13 97410048 97410121 -22334777 - Alu SINE Alu -16 293 221 2215 92 0 0 chr13 97410131 97410402 -22334496 - AluSx SINE Alu -25 287 17 2372 51 3 45 chr13 97410628 97410939 -22333959 - AluY SINE Alu -13 298 1 5208 177 8 4 chr13 97412541 97413827 -22331071 + L1P4 LINE L1 4288 5579 -586 301 118 0 0 chr13 97413827 97413878 -22331020 + L1PA16 LINE L1 6115 6165 -1 539 250 170 28 chr13 97413881 97414205 -22330693 - L1ME2 LINE L1 -44 6120 5751 287 198 233 17 chr13 97414215 97414331 -22330567 - L1ME2 LINE L1 -567 5597 5477 * 1035 255 38 108 chr13 97414327 97415009 -22329889 - L1ME2 LINE L1 -2215 3931 3298 318 319 147 12 chr13 97415443 97415606 -22329292 - MIR SINE MIR -57 205 21 183 156 0 0 chr13 97415686 97415718 -22329180 + (TA)n Simple_repeat Simple_repeat 2 33 0 1810 134 43 0 chr13 97417018 97417294 -22327604 - AluSx SINE Alu -24 288 1 2158 95 6 19 chr13 97418138 97418455 -22326443 + AluSq SINE Alu 1 313 0 321 242 22 22 chr13 97418702 97418793 -22326105 + MER5B DNA MER1_type 88 178 0 180 0 0 0 chr13 97418886 97418906 -22325992 + (A)n Simple_repeat Simple_repeat 1 20 0 187 338 26 0 chr13 97419635 97419712 -22325186 + MIR3 SINE MIR 130 208 0 22 35 0 0 chr13 97419939 97419968 -22324930 + AT_rich Low_complexity Low_complexity 1 29 0 1250 102 0 0 chr13 97420405 97420572 -22324326 - AluSg/x SINE Alu -9 303 137 626 270 89 14 chr13 97420868 97421161 -22323737 + L1ME4a LINE L1 5612 5926 -195 247 272 116 68 chr13 97422224 97422371 -22322527 + MIR SINE MIR 108 261 -1 22 70 0 0 chr13 97422687 97422730 -22322168 + AT_rich Low_complexity Low_complexity 1 43 0 1967 141 24 0 chr13 97423228 97423518 -22321380 - AluSx SINE Alu -15 297 1 762 255 134 39 chr13 97424202 97424642 -22320256 + MLT1D LTR MaLR 1 467 0 23 33 0 0 chr13 97426437 97426467 -22318431 + AT_rich Low_complexity Low_complexity 1 30 0 191 362 14 0 chr13 97426669 97426738 -22318160 - MIR3 SINE MIR -6 202 133 226 333 143 42 chr13 97426738 97426906 -22317992 + L2 LINE L2 2617 2801 -513 280 204 114 0 chr13 97426945 97427033 -22317865 + MER103 DNA DNA 1 98 -68 288 170 0 0 chr13 97427988 97428041 -22316857 + (TG)n Simple_repeat Simple_repeat 2 54 0 275 143 0 18 chr13 97428430 97428486 -22316412 + (TA)n Simple_repeat Simple_repeat 2 56 0 532 234 0 0 chr13 97429179 97429286 -22315612 + AluJb SINE Alu 159 265 -47 281 350 47 21 chr13 97431330 97431564 -22313334 - L1MC/D LINE L1 -2063 5745 5506 902 122 15 0 chr13 97431779 97431910 -22312988 + AluSx SINE Alu 1 133 -179 234 0 0 0 chr13 97431917 97431943 -22312955 + (TA)n Simple_repeat Simple_repeat 2 27 0 330 189 22 22 chr13 97431943 97432033 -22312865 - L1MC4 LINE L1 -1339 6703 6614 1187 137 0 26 chr13 97432051 97432241 -22312657 + AluSx SINE Alu 127 311 -1 312 315 64 35 chr13 97432272 97432475 -22312423 - MER102a DNA MER1_type -8 322 114 26 30 0 0 chr13 97433267 97433300 -22311598 + AT_rich Low_complexity Low_complexity 1 33 0 570 313 40 36 chr13 97433767 97434221 -22310677 - L1MC4a LINE L1 -313 5808 5665 263 340 0 48 chr13 97435550 97435653 -22309245 - L2 LINE L2 0 3272 3175 1813 172 25 73 chr13 97435829 97436237 -22308661 + MLT1B LTR MaLR 3 390 0 234 371 120 0 chr13 97436640 97436815 -22308083 - L2 LINE L2 -553 2761 2566 497 273 80 69 chr13 97437953 97438228 -22306670 - LTR16A LTR ERVL -11 439 162 1499 203 19 32 chr13 97438522 97438838 -22306060 + AluJb SINE Alu 1 312 0 26 0 0 0 chr13 97439233 97439259 -22305639 + AT_rich Low_complexity Low_complexity 1 26 0 1353 221 39 25 chr13 97439565 97439923 -22304975 - MLT1A1 LTR MaLR -2 363 1 2132 119 0 7 chr13 97439968 97440278 -22304620 - AluSq SINE Alu -5 308 1 247 292 0 45 chr13 97440427 97440516 -22304382 + L2 LINE L2 3216 3300 -13 192 40 0 0 chr13 97441510 97441535 -22303363 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 201 256 113 113 chr13 97441620 97441780 -22303118 - MIR SINE MIR -82 180 21 369 60 0 0 chr13 97443105 97443155 -22301743 - MADE1 DNA Mariner 0 80 31 347 286 219 24 chr13 97443297 97443507 -22301391 + MIR SINE MIR 12 262 0 322 115 0 58 chr13 97443702 97443754 -22301144 - MLT1J LTR MaLR -69 442 394 2870 181 20 3 chr13 97444151 97444738 -22300160 + L1MB4 LINE L1 5579 6175 -5 198 437 15 0 chr13 97445266 97445401 -22299497 - L2 LINE L2 -234 3038 2902 22 0 0 0 chr13 97446302 97446324 -22298574 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 97446607 97446630 -22298268 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 97447181 97447202 -22297696 + AT_rich Low_complexity Low_complexity 1 21 0 190 409 0 11 chr13 97447844 97447932 -22296966 - MIR SINE MIR -147 115 29 471 63 0 0 chr13 97449230 97449293 -22295605 + (TG)n Simple_repeat Simple_repeat 2 64 0 1495 171 32 29 chr13 97449296 97449577 -22295321 - AluJb SINE Alu -30 282 1 23 33 0 0 chr13 97450908 97450938 -22293960 + AT_rich Low_complexity Low_complexity 1 30 0 34 24 0 0 chr13 97451220 97451261 -22293637 + AT_rich Low_complexity Low_complexity 1 41 0 986 175 9 86 chr13 97452404 97452729 -22292169 - AluSq SINE Alu -3 300 1 818 121 86 7 chr13 97453034 97453174 -22291724 + AluSc SINE Alu 152 302 -7 239 221 162 0 chr13 97453372 97453440 -22291458 - MER91C DNA MER1_type -41 99 21 27 0 0 0 chr13 97454239 97454266 -22290632 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 97455340 97455361 -22289537 + AT_rich Low_complexity Low_complexity 1 21 0 1367 101 87 0 chr13 97456443 97456651 -22288247 - L1PA13 LINE L1 -11 6152 5927 434 344 33 27 chr13 97456928 97457111 -22287787 + L2 LINE L2 3089 3272 0 25 31 0 0 chr13 97457895 97457927 -22286971 + AT_rich Low_complexity Low_complexity 1 32 0 2227 177 10 8 chr13 97458431 97458833 -22286065 + LTR45B LTR ERV1 3 405 -84 32 43 0 0 chr13 97459052 97459098 -22285800 + AT_rich Low_complexity Low_complexity 1 46 0 10435 149 23 9 chr13 97460003 97461789 -22283109 + Tigger1 DNA MER2_type 1 1810 -608 683 219 69 57 chr13 97461909 97462155 -22282743 - MER41B LTR ERV1 -273 362 114 2902 153 4 16 chr13 97462158 97462661 -22282237 + L1PA16 LINE L1 5670 6166 0 254 290 93 37 chr13 97462709 97462816 -22282082 + MIR SINE MIR 79 191 -71 278 238 248 19 chr13 97462831 97462936 -22281962 + MER5A DNA MER1_type 61 189 0 6683 140 35 15 chr13 97462956 97464159 -22280739 + Tigger3b DNA MER2_type 1 1227 -4 12151 99 16 1 chr13 97464640 97467195 -22277703 - L1PA7 LINE L1 -8 6146 3560 1399 60 70 0 chr13 97467297 97467498 -22277400 - L1PA7 LINE L1 -3578 2568 2354 22 56 0 0 chr13 97468547 97468583 -22276315 + AT_rich Low_complexity Low_complexity 1 36 0 1571 221 81 27 chr13 97468780 97469223 -22275675 - MLT1C LTR MaLR 0 467 1 303 345 8 14 chr13 97469466 97469614 -22275284 + MLT1F LTR MaLR 1 148 -419 558 223 175 0 chr13 97469637 97469803 -22275095 + MLT1F LTR MaLR 346 540 -2 420 298 25 25 chr13 97471703 97471901 -22272997 + L2 LINE L2 2499 2696 -618 576 208 68 111 chr13 97471904 97472111 -22272787 - MER58A DNA MER1_type -23 201 4 344 307 84 72 chr13 97472113 97472574 -22272324 + L2 LINE L2 2698 3152 -161 1440 164 7 87 chr13 97472574 97472911 -22271987 - AluJb SINE Alu 0 312 1 344 307 84 72 chr13 97472911 97472931 -22271967 + L2 LINE L2 3152 3170 -143 1963 133 0 3 chr13 97472931 97473238 -22271660 - AluSx SINE Alu 0 306 1 344 307 84 72 chr13 97473238 97473360 -22271538 + L2 LINE L2 3170 3313 0 183 323 110 39 chr13 97473494 97473649 -22271249 + L3 LINE CR1 983 1148 -429 490 303 87 30 chr13 97476809 97477040 -22267858 - MIR SINE MIR -12 250 7 983 202 0 0 chr13 97477579 97477752 -22267146 + Tigger5 DNA MER2_type 2151 2323 0 333 330 102 0 chr13 97477762 97477880 -22267018 + L2 LINE L2 3122 3251 -21 279 0 0 0 chr13 97481049 97481080 -22263818 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 201 74 0 0 chr13 97481485 97481512 -22263386 + (A)n Simple_repeat Simple_repeat 1 27 0 203 189 0 0 chr13 97482349 97482386 -22262512 + (TATG)n Simple_repeat Simple_repeat 1 37 0 26 50 0 0 chr13 97482447 97482487 -22262411 + AT_rich Low_complexity Low_complexity 1 40 0 2122 108 21 6 chr13 97482487 97482819 -22262079 - L1MA1 LINE L1 0 6302 5966 833 245 0 0 chr13 97482825 97482988 -22261910 - FRAM SINE Alu -3 163 1 24 0 0 0 chr13 97483733 97483757 -22261141 + AT_rich Low_complexity Low_complexity 1 24 0 37 0 0 0 chr13 97484198 97484235 -22260663 + AT_rich Low_complexity Low_complexity 1 37 0 2302 67 30 3 chr13 97485943 97486240 -22258658 + AluY SINE Alu 1 305 -6 333 0 0 0 chr13 97538024 97538061 -22206837 + (CA)n Simple_repeat Simple_repeat 2 38 0 2378 92 0 0 chr13 97538425 97538731 -22206167 + AluSc SINE Alu 1 306 -3 190 333 69 0 chr13 97538812 97538899 -22205999 - MIR SINE MIR -112 150 58 5003 161 35 7 chr13 97539253 97540194 -22204704 - L1MA8 LINE L1 -6 6285 5319 4661 91 44 22 chr13 97540266 97540992 -22203906 - L1PA10 LINE L1 -1 6167 5426 348 24 0 0 chr13 97540993 97541034 -22203864 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 197 358 32 49 chr13 97541439 97541562 -22203336 + L2 LINE L2 3143 3263 -9 278 355 99 17 chr13 97542786 97542958 -22201940 - MER5A DNA MER1_type 0 189 4 1685 175 24 7 chr13 97543108 97543400 -22201498 + AluJo SINE Alu 1 297 -15 1087 215 9 5 chr13 97544680 97544903 -22199995 - MER58A DNA MER1_type 0 224 1 1107 193 61 4 chr13 97544978 97545258 -22199640 - L1MA4 LINE L1 -2 6298 6003 1118 207 47 103 chr13 97545493 97545880 -22199018 - MLT1A1 LTR MaLR 0 365 1 234 0 0 0 chr13 97545948 97545974 -22198924 + (CA)n Simple_repeat Simple_repeat 2 27 0 977 321 87 14 chr13 97546117 97546702 -22198196 - L2 LINE L2 -445 2869 2242 252 0 0 0 chr13 97546912 97546940 -22197958 + (TC)n Simple_repeat Simple_repeat 2 29 0 225 0 0 0 chr13 97546940 97546965 -22197933 + (TA)n Simple_repeat Simple_repeat 1 25 0 546 24 12 24 chr13 97546993 97547075 -22197823 + (TA)n Simple_repeat Simple_repeat 1 81 0 309 378 62 40 chr13 97548040 97548363 -22196535 - L2 LINE L2 0 3272 2943 213 253 27 53 chr13 97548642 97548717 -22196181 - L2 LINE L2 0 3313 3241 180 111 0 0 chr13 97549024 97549051 -22195847 + (T)n Simple_repeat Simple_repeat 1 27 0 1982 138 0 0 chr13 97549744 97550040 -22194858 - AluSx SINE Alu -16 296 1 257 326 99 28 chr13 97550324 97550465 -22194433 + MIR SINE MIR 40 190 -72 569 171 129 14 chr13 97550637 97550777 -22194121 + MER105 DNA DNA 48 203 -1 189 0 0 0 chr13 97550831 97550852 -22194046 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 318 253 161 31 chr13 97551714 97551876 -22193022 - MER5A DNA MER1_type -1 188 6 1537 146 92 7 chr13 97552478 97552890 -22192008 - MER41C LTR ERV1 0 554 34 1278 168 95 42 chr13 97553357 97553642 -22191256 + AluJb SINE Alu 1 300 -12 262 266 51 0 chr13 97554602 97554681 -22190217 - MER5A DNA MER1_type -77 112 30 265 263 188 0 chr13 97554855 97554935 -22189963 + MIR3 SINE MIR 108 202 -6 666 281 160 61 chr13 97555091 97555586 -22189312 - L2 LINE L2 -1977 1337 794 2393 90 0 0 chr13 97556066 97556367 -22188531 + AluSx SINE Alu 1 301 -11 338 296 35 9 chr13 97557331 97557446 -22187452 - L2 LINE L2 -1 3312 3195 1395 186 41 34 chr13 97559834 97560125 -22184773 - AluJo SINE Alu -17 295 3 3480 195 63 40 chr13 97560596 97561538 -22183360 + L1MB8 LINE L1 5209 6172 -6 189 282 0 42 chr13 97562696 97562767 -22182131 - MIR SINE MIR -1 261 194 22 35 0 0 chr13 97562891 97562920 -22181978 + AT_rich Low_complexity Low_complexity 1 29 0 2073 133 0 7 chr13 97563768 97564069 -22180829 - AluSq SINE Alu -14 299 1 426 288 18 0 chr13 97564950 97565061 -22179837 - MER5A DNA MER1_type -76 113 1 249 278 0 56 chr13 97566136 97566244 -22178654 - L2 LINE L2 -5 3308 3207 456 301 21 0 chr13 97566301 97566444 -22178454 - L2 LINE L2 -649 2665 2520 437 399 44 15 chr13 97568589 97568930 -22175968 + L3 LINE CR1 190 540 -1037 1920 108 9 70 chr13 97569516 97569832 -22175066 + AluSg SINE Alu 1 297 -13 569 219 40 33 chr13 97570167 97570318 -22174580 - MIR SINE MIR 0 262 111 1406 115 5 14 chr13 97570625 97570834 -22174064 + AluSg SINE Alu 61 267 -43 22 80 0 0 chr13 97571142 97571192 -22173706 + AT_rich Low_complexity Low_complexity 1 50 0 21 82 0 0 chr13 97571743 97571792 -22173106 + AT_rich Low_complexity Low_complexity 1 49 0 186 260 0 0 chr13 97574090 97574140 -22170758 + MIR SINE MIR 101 150 -112 506 309 0 11 chr13 97574331 97574509 -22170389 + MER69A DNA AcHobo 2 177 0 696 249 104 5 chr13 97574512 97574705 -22170193 + MIR SINE MIR 24 235 -27 23 33 0 0 chr13 97574717 97574747 -22170151 + AT_rich Low_complexity Low_complexity 1 30 0 270 180 22 79 chr13 97574801 97574890 -22170008 - L1ME LINE L1 -385 5736 5653 1669 168 7 3 chr13 97575008 97575293 -22169605 + AluJb SINE Alu 3 288 -24 243 0 0 0 chr13 97575299 97575326 -22169572 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 23 78 0 0 chr13 97575326 97575377 -22169521 + AT_rich Low_complexity Low_complexity 1 51 0 281 163 48 12 chr13 97575385 97575551 -22169347 + (TA)n Simple_repeat Simple_repeat 1 172 0 21 0 0 0 chr13 97575805 97575826 -22169072 + AT_rich Low_complexity Low_complexity 1 21 0 578 147 136 130 chr13 97576371 97576548 -22168350 - MER5B DNA MER1_type 0 178 1 26 30 0 0 chr13 97577761 97577794 -22167104 + AT_rich Low_complexity Low_complexity 1 33 0 499 266 51 28 chr13 97578527 97578704 -22166194 - MER58C DNA MER1_type -1 214 34 196 146 21 21 chr13 97579434 97579482 -22165416 + (TA)n Simple_repeat Simple_repeat 1 48 0 191 167 0 21 chr13 97579550 97579598 -22165300 + (TA)n Simple_repeat Simple_repeat 1 47 0 2843 75 3 0 chr13 97579887 97580259 -22164639 - L1PA7 LINE L1 -11 6143 5771 374 0 22 0 chr13 97580259 97580305 -22164593 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2022 136 0 0 chr13 97580305 97580592 -22164306 - AluY SINE Alu -24 287 1 21 36 0 0 chr13 97580642 97580670 -22164228 + AT_rich Low_complexity Low_complexity 1 28 0 258 303 40 10 chr13 97580802 97580901 -22163997 + MIR SINE MIR 53 154 -108 24 53 0 0 chr13 97581286 97581324 -22163574 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr13 97581450 97581492 -22163406 + AT_rich Low_complexity Low_complexity 1 42 0 803 227 10 68 chr13 97582588 97582795 -22162103 + MER20 DNA MER1_type 16 210 -9 2264 102 7 0 chr13 97583285 97583589 -22161309 - AluSx SINE Alu -6 306 1 23 0 0 0 chr13 97585792 97585815 -22159083 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 97586136 97586159 -22158739 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr13 97588042 97588068 -22156830 + (A)n Simple_repeat Simple_repeat 1 26 0 2498 74 0 0 chr13 97589239 97589549 -22155349 + AluY SINE Alu 2 311 0 207 0 0 0 chr13 97589552 97589575 -22155323 + (TA)n Simple_repeat Simple_repeat 2 24 0 318 167 0 0 chr13 97590475 97590535 -22154363 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 459 0 0 0 chr13 97590537 97590588 -22154310 + (GA)n Simple_repeat Simple_repeat 2 52 0 422 306 184 13 chr13 97591429 97591821 -22153077 + L1ME3 LINE L1 5493 5951 -211 236 217 50 0 chr13 97592005 97592065 -22152833 + (TATG)n Simple_repeat Simple_repeat 3 65 0 1782 179 0 3 chr13 97592606 97592891 -22152007 + AluJb SINE Alu 6 289 -23 2183 98 7 3 chr13 97592901 97593212 -22151686 + AluSp SINE Alu 1 313 0 183 319 0 21 chr13 97594257 97594304 -22150594 - L2 LINE L2 -31 3282 3237 263 309 84 80 chr13 97595158 97595420 -22149478 - L2 LINE L2 -181 3091 2829 386 333 61 61 chr13 97595537 97595915 -22148983 - L2 LINE L2 -13 3259 2882 313 335 50 6 chr13 97596437 97596616 -22148282 - L2 LINE L2 -1264 2050 1864 272 369 27 0 chr13 97596671 97596782 -22148116 + MER5C DNA MER1_type 11 124 -200 1751 212 11 5 chr13 97597206 97597583 -22147315 - L1P LINE L1 -2304 3842 3464 1152 202 8 4 chr13 97597584 97597846 -22147052 + L1P LINE L1 3199 3461 -2685 229 216 63 36 chr13 97600263 97600374 -22144524 - L1ME4a LINE L1 -1 6120 6007 331 298 96 84 chr13 97601048 97601474 -22143424 + Charlie8 DNA MER1_type 87 517 -1900 2264 110 0 0 chr13 97601575 97601866 -22143032 - AluSc SINE Alu -18 291 1 5878 28 0 0 chr13 97601901 97602610 -22142288 - L1PA2 LINE L1 -820 5326 4618 7052 19 0 1 chr13 97602610 97603449 -22141449 + L1PA2 LINE L1 5336 6155 0 352 317 50 0 chr13 97603681 97603801 -22141097 - MIR SINE MIR -21 241 116 312 189 0 0 chr13 97603906 97603959 -22140939 - MER33 DNA MER1_type -1 323 271 1924 101 4 8 chr13 97603960 97604218 -22140680 + AluSq SINE Alu 1 257 -56 345 275 11 0 chr13 97604218 97604309 -22140589 - MER33 DNA MER1_type -214 110 19 210 246 0 0 chr13 97605766 97605823 -22139075 + CT-rich Low_complexity Low_complexity 1 57 0 180 331 174 0 chr13 97607643 97607764 -22137134 - L2 LINE L2 -5 3267 3126 229 228 138 106 chr13 97609244 97609367 -22135531 + MIR SINE MIR 66 192 -70 24 32 0 0 chr13 97610993 97611024 -22133874 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr13 97611220 97611247 -22133651 + AT_rich Low_complexity Low_complexity 1 27 0 5900 140 34 38 chr13 97612288 97613509 -22131389 - L1MC1 LINE L1 -6 6327 5101 216 254 0 34 chr13 97613785 97613844 -22131054 - L2 LINE L2 -3 3310 3254 30 27 0 0 chr13 97615491 97615528 -22129370 + AT_rich Low_complexity Low_complexity 1 37 0 1110 285 91 55 chr13 97615861 97616457 -22128441 - L2 LINE L2 -1073 2241 1625 180 309 242 0 chr13 97616465 97616614 -22128284 - MIR SINE MIR -65 197 13 199 224 53 40 chr13 97617297 97617373 -22127525 + L2 LINE L2 2745 2821 -493 665 274 37 37 chr13 97618343 97618588 -22126310 + MIR SINE MIR 18 262 0 250 297 68 0 chr13 97618677 97618751 -22126147 - L2 LINE L2 -8 3305 3227 309 270 0 14 chr13 97619235 97619309 -22125589 + MIR3 SINE MIR 93 165 -43 860 258 31 0 chr13 97620604 97620798 -22124100 + MER58A DNA MER1_type 4 203 -21 764 278 89 32 chr13 97622020 97622268 -22122630 - MIR SINE MIR 0 262 1 575 247 9 0 chr13 97623608 97623768 -22121130 + L1ME2 LINE L1 5704 5867 -297 424 53 0 0 chr13 97623790 97623847 -22121051 - L1PA13 LINE L1 -487 5687 5631 3144 108 2 0 chr13 97623847 97624299 -22120599 + L1PA13 LINE L1 5691 6144 -19 23 68 0 0 chr13 97624321 97624365 -22120533 + AT_rich Low_complexity Low_complexity 1 44 0 646 325 26 1 chr13 97624771 97625000 -22119898 + MIR SINE MIR 30 259 -3 195 394 21 0 chr13 97625095 97625189 -22119709 + L2 LINE L2 3126 3221 -51 26 30 0 0 chr13 97625851 97625884 -22119014 + AT_rich Low_complexity Low_complexity 1 33 0 189 256 44 78 chr13 97627361 97627451 -22117447 + MIR SINE MIR 20 106 -102 236 289 70 44 chr13 97627593 97627707 -22117191 + MIR SINE MIR 117 233 -29 243 149 0 21 chr13 97627914 97627959 -22116939 - MLT1G LTR MaLR -2 588 545 1363 174 50 0 chr13 97627959 97628217 -22116681 + MLT1B LTR MaLR 1 271 -119 849 121 0 0 chr13 97628233 97628349 -22116549 - AluJb SINE Alu -196 116 1 585 280 28 47 chr13 97628556 97628767 -22116131 + MIR SINE MIR 8 214 -48 1246 221 30 6 chr13 97629820 97630243 -22114655 - MLT1D LTR MaLR -8 497 1 720 217 116 10 chr13 97630876 97631074 -22113824 + MER20 DNA MER1_type 1 219 0 904 304 138 41 chr13 97631188 97631490 -22113408 + L2 LINE L2 2370 2641 -672 2739 132 18 2 chr13 97631490 97631931 -22112967 - L1PA13 LINE L1 -13 6150 5703 904 304 138 41 chr13 97631931 97632460 -22112438 + L2 LINE L2 2641 3289 -24 267 311 107 0 chr13 97632982 97633085 -22111813 + L2 LINE L2 3157 3270 -2 209 313 0 0 chr13 97633101 97633149 -22111749 + L2 LINE L2 3210 3257 -15 30 59 0 0 chr13 97634833 97634884 -22110014 + AT_rich Low_complexity Low_complexity 1 51 0 961 231 30 118 chr13 97635596 97635821 -22109077 + MSTD LTR MaLR 1 171 -225 1969 122 7 11 chr13 97635821 97636107 -22108791 - AluSx SINE Alu -27 285 1 961 231 30 118 chr13 97636107 97636313 -22108585 + MSTD LTR MaLR 171 394 -2 1515 93 0 0 chr13 97636482 97636707 -22108191 - L1P LINE L1 -4715 1431 1207 7658 23 1 2 chr13 97636707 97638156 -22106742 + L1PA3 LINE L1 4705 6152 -3 354 146 98 15 chr13 97638181 97638268 -22106630 - LTR48B LTR ERV1 -47 580 488 197 0 0 67 chr13 97638271 97638301 -22106597 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1663 249 21 37 chr13 97638932 97639493 -22105405 - L1MC3 LINE L1 -1009 6776 6264 241 48 71 0 chr13 97639493 97639535 -22105363 + T-rich Low_complexity Low_complexity 3 47 0 25 0 0 0 chr13 97639540 97639565 -22105333 + AT_rich Low_complexity Low_complexity 1 25 0 1866 136 41 0 chr13 97639577 97639872 -22105026 - AluJb SINE Alu -3 309 3 773 239 60 4 chr13 97639877 97640111 -22104787 - L1MC3 LINE L1 -1495 6290 6044 1538 119 13 122 chr13 97640686 97641096 -22103802 - L1MC3 LINE L1 -609 5542 5291 21 36 0 0 chr13 97641276 97641304 -22103594 + AT_rich Low_complexity Low_complexity 1 28 0 197 394 118 8 chr13 97642441 97642568 -22102330 - L2 LINE L2 -21 3251 3111 347 248 71 18 chr13 97642579 97642692 -22102206 + L1ME LINE L1 5533 5651 -470 183 42 0 0 chr13 97644179 97644203 -22100695 + (T)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr13 97644620 97644649 -22100249 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chr13 97644783 97644839 -22100059 + AT_rich Low_complexity Low_complexity 1 56 0 27 29 0 0 chr13 97648129 97648163 -22096735 + AT_rich Low_complexity Low_complexity 1 34 0 321 282 15 30 chr13 97649061 97649192 -22095706 + (CATATA)n Simple_repeat Simple_repeat 1 129 0 312 171 8 43 chr13 97649263 97649380 -22095518 + (TG)n Simple_repeat Simple_repeat 2 114 0 225 189 0 40 chr13 97649458 97649532 -22095366 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 229 123 18 53 chr13 97649534 97649591 -22095307 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 2075 112 17 3 chr13 97650489 97650785 -22094113 - AluSq SINE Alu -13 300 1 447 291 8 8 chr13 97650973 97651107 -22093791 - L3 LINE CR1 -1009 568 435 257 277 0 32 chr13 97651702 97651796 -22093102 + MARNA DNA Mariner 394 484 -102 279 310 0 0 chr13 97652491 97652607 -22092291 + (TA)n Simple_repeat Simple_repeat 2 117 0 450 176 0 0 chr13 97652625 97652710 -22092188 + (TA)n Simple_repeat Simple_repeat 1 85 0 1806 167 0 17 chr13 97653274 97653621 -22091277 + L1MA4 LINE L1 5954 6294 -6 1199 210 58 56 chr13 97654523 97654899 -22089999 + L1MA4 LINE L1 5922 6298 -2 263 257 128 73 chr13 97655644 97655823 -22089075 - L2 LINE L2 0 3313 3125 302 226 12 36 chr13 97656360 97656444 -22088454 - L1MCa LINE L1 -4361 2065 1984 28 0 0 0 chr13 97658228 97658256 -22086642 + AT_rich Low_complexity Low_complexity 1 28 0 2208 114 7 0 chr13 97659050 97659348 -22085550 + AluSg SINE Alu 1 300 -10 5311 147 44 9 chr13 97659359 97660336 -22084562 - L1MA6 LINE L1 -6 6294 5284 1628 174 43 3 chr13 97660330 97660657 -22084241 + L1 LINE L1 4811 5150 -996 * 310 275 238 10 chr13 97660976 97661169 -22083729 + MIR SINE MIR 1 237 -25 1135 189 15 0 chr13 97661969 97662175 -22082723 + AluJb SINE Alu 84 292 -20 2280 30 0 0 chr13 97662209 97662477 -22082421 - L1PA3 LINE L1 -4 6151 5884 219 276 69 0 chr13 97662668 97662726 -22082172 + MIR SINE MIR 49 110 -152 21 0 0 0 chr13 97664864 97664885 -22080013 + AT_rich Low_complexity Low_complexity 1 21 0 182 325 175 8 chr13 97665039 97665159 -22079739 - MIR3 SINE MIR -68 140 1 201 259 129 35 chr13 97665248 97665364 -22079534 + L2 LINE L2 3118 3244 -69 893 328 67 17 chr13 97666124 97666588 -22078310 + L2 LINE L2 2827 3313 0 234 137 0 0 chr13 97667484 97667523 -22077375 + (TG)n Simple_repeat Simple_repeat 1 42 -9 2288 112 48 28 chr13 97667523 97667880 -22077018 + THE1B LTR MaLR 1 364 0 234 137 0 0 chr13 97667880 97667891 -22077007 + (TG)n Simple_repeat Simple_repeat 41 51 0 286 270 0 0 chr13 97668773 97668836 -22076062 - MER82 DNA MER2_type -588 65 3 279 0 0 0 chr13 97668836 97668867 -22076031 + (TG)n Simple_repeat Simple_repeat 2 32 0 429 269 115 0 chr13 97669080 97669210 -22075688 + MIR SINE MIR 48 192 -70 1322 227 72 63 chr13 97669823 97669891 -22075007 - MLT1C LTR MaLR 0 467 401 2423 46 0 0 chr13 97669891 97670204 -22074694 + AluY SINE Alu 1 313 0 1322 227 72 63 chr13 97670204 97670592 -22074306 - MLT1C LTR MaLR -66 401 6 216 0 0 0 chr13 97670913 97670937 -22073961 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3170 24 0 3 chr13 97671500 97671874 -22073024 - L1PA4 LINE L1 -5 6150 5778 253 319 84 47 chr13 97672367 97672580 -22072318 + L2 LINE L2 2262 2482 -832 22 0 0 0 chr13 97674252 97674274 -22070624 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 97674600 97674629 -22070269 + AT_rich Low_complexity Low_complexity 1 29 0 2181 109 7 0 chr13 97675246 97675539 -22069359 + AluSg SINE Alu 1 295 -15 2220 154 92 0 chr13 97676344 97676734 -22068164 + MSTB LTR MaLR 1 426 0 436 349 112 38 chr13 97677416 97678348 -22066550 + L2 LINE L2 1815 2815 -499 3235 143 124 88 chr13 97678562 97679359 -22065539 - LTR1B LTR ERV1 0 826 1 213 194 0 0 chr13 97679507 97679543 -22065355 + polypurine Low_complexity Low_complexity 2 37 0 963 201 35 40 chr13 97679890 97680089 -22064809 - MER20 DNA MER1_type 0 219 22 236 29 0 29 chr13 97681390 97681424 -22063474 + (GAATG)n Simple_repeat Simple_repeat 5 37 0 249 139 0 0 chr13 97682099 97682142 -22062756 + (T)n Simple_repeat Simple_repeat 1 43 0 455 205 36 0 chr13 97682264 97682376 -22062522 - L1MA8 LINE L1 -5 6286 6171 386 332 34 51 chr13 97682475 97682710 -22062188 - MIR SINE MIR -12 250 20 338 341 28 52 chr13 97682712 97682923 -22061975 + L3b LINE CR1 1203 1408 -175 903 198 60 179 chr13 97683031 97683684 -22061214 - MLT1G LTR MaLR 0 530 1 327 311 39 94 chr13 97684994 97685248 -22059650 + MIR SINE MIR 12 251 -11 333 0 0 0 chr13 97686286 97686323 -22058575 + (CA)n Simple_repeat Simple_repeat 2 38 0 201 357 102 10 chr13 97686996 97687094 -22057804 - L2 LINE L2 -17 3255 3149 650 172 22 0 chr13 97687095 97687229 -22057669 - MER33 DNA MER1_type 0 324 188 222 239 0 0 chr13 97687229 97687275 -22057623 + GA-rich Low_complexity Low_complexity 1 46 0 353 129 14 0 chr13 97687276 97687346 -22057552 + A-rich Low_complexity Low_complexity 5 75 0 33 0 0 0 chr13 97687465 97687498 -22057400 + AT_rich Low_complexity Low_complexity 1 33 0 307 265 0 78 chr13 97687525 97687627 -22057271 - MER5B DNA MER1_type -75 103 10 1972 125 7 7 chr13 97687705 97688000 -22056898 - AluSx SINE Alu -17 295 1 250 282 61 46 chr13 97688001 97688132 -22056766 - L2 LINE L2 -560 2754 2622 2480 158 29 5 chr13 97688195 97688613 -22056285 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr13 97688866 97688887 -22056011 + AT_rich Low_complexity Low_complexity 1 21 0 2285 102 0 19 chr13 97688905 97689218 -22055680 + AluSx SINE Alu 1 307 -5 373 315 137 15 chr13 97689241 97689438 -22055460 - MIR SINE MIR -37 225 5 26 0 0 0 chr13 97689998 97690024 -22054874 + AT_rich Low_complexity Low_complexity 1 26 0 291 310 21 49 chr13 97690054 97690196 -22054702 + MIR SINE MIR 10 147 -115 719 172 21 35 chr13 97690237 97690382 -22054516 - MLT1D LTR MaLR 0 505 363 195 114 0 0 chr13 97690382 97690417 -22054481 + (T)n Simple_repeat Simple_repeat 1 35 0 495 216 0 10 chr13 97690417 97690514 -22054384 - MLT1D LTR MaLR -145 360 265 1033 207 9 22 chr13 97690605 97690827 -22054071 + MER20 DNA MER1_type 1 219 0 551 233 45 154 chr13 97690827 97691109 -22053789 + MIR SINE MIR 11 262 0 1240 193 16 4 chr13 97691612 97691866 -22053032 + MER33 DNA MER1_type 2 258 -66 1017 229 32 14 chr13 97691875 97692154 -22052744 - L1MB5 LINE L1 -8 6166 5883 274 244 13 0 chr13 97692146 97692224 -22052674 - L1MB5 LINE L1 -213 5961 5883 * 240 250 0 0 chr13 97692216 97692280 -22052618 - L1MB5 LINE L1 -213 5961 5898 * 836 227 123 0 chr13 97692286 97692537 -22052361 - L1MB5 LINE L1 -213 5961 5680 2352 178 33 0 chr13 97692549 97692999 -22051899 - L1PA16 LINE L1 -16 6150 5686 429 188 10 21 chr13 97693002 97693098 -22051800 + MER33 DNA MER1_type 229 323 -1 344 256 85 34 chr13 97693231 97693407 -22051491 + MER5A DNA MER1_type 1 185 -4 265 294 0 0 chr13 97693824 97693892 -22051006 + (TA)n Simple_repeat Simple_repeat 2 69 0 2132 122 3 0 chr13 97695004 97695307 -22049591 - AluSx SINE Alu -8 304 1 2002 102 0 0 chr13 97696251 97696516 -22048382 + AluSc SINE Alu 1 265 -44 197 33 33 0 chr13 97696527 97696557 -22048341 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr13 97696730 97696759 -22048139 + AT_rich Low_complexity Low_complexity 1 29 0 654 70 12 0 chr13 97696762 97696877 -22048021 + AluY SINE Alu 196 311 0 709 200 0 8 chr13 97697054 97697179 -22047719 - FLAM_C SINE Alu -9 124 1 259 281 244 6 chr13 97697225 97697389 -22047509 - MIR SINE MIR -3 259 57 585 83 0 0 chr13 97697805 97697889 -22047009 + (TGGA)n Simple_repeat Simple_repeat 2 85 0 611 251 76 58 chr13 97697968 97698362 -22046536 + L1MC5 LINE L1 7458 7858 -103 684 199 19 31 chr13 97699604 97699765 -22045133 - MLT1E LTR MaLR 0 593 435 419 287 58 29 chr13 97699739 97699768 -22045130 - MLT1E LTR MaLR -390 203 176 * 1725 170 0 7 chr13 97699768 97700051 -22044847 - AluJo SINE Alu -31 281 1 419 287 58 29 chr13 97700051 97700195 -22044703 - MLT1E LTR MaLR -417 176 25 349 296 171 0 chr13 97700898 97701050 -22043848 + LTR16A LTR ERVL 251 428 -22 423 0 0 0 chr13 97701600 97701647 -22043251 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2386 50 0 4 chr13 97701653 97701933 -22042965 - AluY SINE Alu -32 279 1 621 265 140 77 chr13 97702134 97702526 -22042372 - L1MEd LINE L1 -5350 769 353 714 234 21 5 chr13 97702530 97702718 -22042180 + MER63C DNA MER1_type 1 191 -739 1694 211 15 23 chr13 97702723 97703186 -22041712 - MER89 LTR ERV1 -1 558 1 2214 208 88 7 chr13 97703186 97703730 -22041168 + MER63C DNA MER1_type 192 779 -151 911 124 0 0 chr13 97703737 97703858 -22041040 - FLAM_C SINE Alu -19 124 4 430 184 48 0 chr13 97703865 97703968 -22040930 + MER63C DNA MER1_type 783 890 -40 699 264 67 57 chr13 97704066 97704365 -22040533 - L1MEd LINE L1 -5813 306 5 266 140 70 0 chr13 97707081 97707138 -22037760 + L1MB1 LINE L1 5959 6019 -170 23 33 0 0 chr13 97707138 97707168 -22037730 + AT_rich Low_complexity Low_complexity 1 30 0 1710 154 18 3 chr13 97707168 97707453 -22037445 - AluJb SINE Alu -23 289 1 954 145 12 0 chr13 97707455 97707621 -22037277 + L1MB4 LINE L1 6012 6179 -1 308 24 24 0 chr13 97708877 97708918 -22035980 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 402 270 24 32 chr13 97708994 97709120 -22035778 + MIR SINE MIR 29 153 -109 430 148 49 31 chr13 97710016 97710178 -22034720 + (TATG)n Simple_repeat Simple_repeat 4 168 0 246 204 0 82 chr13 97710250 97710348 -22034550 - L1MC4 LINE L1 -1339 6703 6614 237 214 45 34 chr13 97710273 97710362 -22034536 + L1MC4 LINE L1 6614 6703 -1339 * 209 356 0 0 chr13 97711074 97711161 -22033737 - MIR3 SINE MIR -1 207 121 1345 201 14 3 chr13 97711327 97711615 -22033283 - L1MB5 LINE L1 -7 6167 5877 985 191 62 9 chr13 97711740 97711950 -22032948 - AluJb SINE Alu -5 307 87 408 40 0 0 chr13 97712668 97712718 -22032180 + (CA)n Simple_repeat Simple_repeat 2 51 0 5253 186 26 8 chr13 97714681 97716590 -22028308 - L1PA16 LINE L1 -2 6164 4177 2226 116 0 0 chr13 97716590 97716892 -22028006 - AluSx SINE Alu -10 302 1 5253 186 26 8 chr13 97716892 97716972 -22027926 - L1PA16 LINE L1 -1989 4177 4100 882 274 35 0 chr13 97717152 97717353 -22027545 - MIR SINE MIR -20 242 35 2578 55 0 6 chr13 97718231 97718543 -22026355 - AluY SINE Alu -1 310 1 357 254 167 29 chr13 97719414 97719552 -22025346 - MIR SINE MIR -43 219 63 24 0 0 0 chr13 97719841 97719865 -22025033 + AT_rich Low_complexity Low_complexity 1 24 0 200 262 71 12 chr13 97719882 97719966 -22024932 + L2 LINE L2 3184 3272 0 237 33 0 0 chr13 97722532 97722562 -22022336 + (T)n Simple_repeat Simple_repeat 1 30 0 2014 74 0 0 chr13 97722597 97722862 -22022036 + AluY SINE Alu 39 303 0 1043 286 50 45 chr13 97722870 97723332 -22021566 + MLT1H LTR MaLR 71 534 -15 1851 162 10 17 chr13 97724081 97724383 -22020515 - AluJo SINE Alu -11 301 2 415 351 32 13 chr13 97724579 97724733 -22020165 - L2 LINE L2 -5 3267 3111 25 31 0 0 chr13 97725706 97725738 -22019160 + AT_rich Low_complexity Low_complexity 1 32 0 339 173 49 0 chr13 97727046 97727127 -22017771 - L1MB3 LINE L1 -8 6175 6091 1583 147 20 8 chr13 97727137 97727413 -22017485 - L1MA4 LINE L1 -141 6023 5752 263 191 0 0 chr13 97727442 97727484 -22017414 + 5S rRNA rRNA 1 42 -79 723 83 0 0 chr13 97730319 97730427 -22014471 + (TC)n Simple_repeat Simple_repeat 1 108 0 2077 148 21 0 chr13 97730477 97730815 -22014083 - MER7A DNA MER2_type 0 346 4 597 304 111 5 chr13 97732224 97732441 -22012457 - MIR SINE MIR -15 247 8 663 217 127 0 chr13 97732441 97732607 -22012291 + MER5A DNA MER1_type 2 188 -1 25 51 0 0 chr13 97732651 97732690 -22012208 + AT_rich Low_complexity Low_complexity 1 39 0 473 0 18 0 chr13 97734980 97735037 -22009861 + (TG)n Simple_repeat Simple_repeat 2 59 0 1549 201 35 14 chr13 97735507 97735851 -22009047 + MLT1D LTR MaLR 113 463 -42 259 191 56 0 chr13 97736026 97736115 -22008783 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 785 184 162 0 chr13 97736602 97736781 -22008117 + MER3 DNA MER1_type 1 208 -1 453 62 0 0 chr13 97736794 97736859 -22008039 + (TG)n Simple_repeat Simple_repeat 2 66 0 25 0 0 0 chr13 97736859 97736884 -22008014 + AT_rich Low_complexity Low_complexity 1 25 0 521 175 67 33 chr13 97737005 97737125 -22007773 + MER5C DNA MER1_type 1 124 -200 903 204 130 22 chr13 97738252 97738483 -22006415 + LTR16A1 LTR ERVL 195 450 -7 30 83 0 0 chr13 97738943 97739015 -22005883 + AT_rich Low_complexity Low_complexity 1 72 0 258 138 46 77 chr13 97740143 97740208 -22004690 - MLT1J LTR MaLR -10 501 439 907 154 0 13 chr13 97740943 97741092 -22003806 - FRAM SINE Alu -10 166 20 216 0 0 0 chr13 97741541 97741565 -22003333 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 537 265 99 31 chr13 97742437 97742660 -22002238 - MLT1J LTR MaLR -36 475 238 2132 121 0 16 chr13 97742664 97742978 -22001920 + AluSc SINE Alu 1 309 0 935 162 36 40 chr13 97742980 97743018 -22001880 + AluJo SINE Alu 92 129 -183 189 94 0 0 chr13 97743018 97743050 -22001848 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 935 162 36 40 chr13 97743050 97743233 -22001665 + AluJo SINE Alu 129 312 0 246 241 71 54 chr13 97743323 97743435 -22001463 - MLT1J LTR MaLR -391 120 7 311 281 70 85 chr13 97744263 97744594 -22000304 - L1ME4a LINE L1 -42 6079 5754 180 216 165 72 chr13 97744662 97744759 -22000139 + MIR SINE MIR 102 207 -55 193 260 0 20 chr13 97744897 97744947 -21999951 - L2 LINE L2 0 3313 3265 364 350 34 23 chr13 97745665 97745842 -21999056 - MER5A DNA MER1_type -3 186 8 1450 183 14 28 chr13 97746117 97746402 -21998496 - MLT1A1 LTR MaLR -84 281 1 330 147 0 0 chr13 97746502 97746570 -21998328 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 437 188 0 0 chr13 97746576 97746661 -21998237 - MIR SINE MIR -58 204 120 253 368 88 25 chr13 97746774 97746978 -21997920 + L2 LINE L2 3040 3256 -16 227 310 0 0 chr13 97747113 97747171 -21997727 + MER117 DNA MER1_type 51 108 -89 248 190 0 0 chr13 97747497 97747555 -21997343 + LTR66 LTR ERVL 394 451 -159 1499 181 35 48 chr13 97748176 97748491 -21996407 + AluJo SINE Alu 1 311 -1 404 67 17 0 chr13 97748530 97748590 -21996308 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 296 202 8 65 chr13 97749564 97749688 -21995210 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 196 234 0 19 chr13 97749691 97749798 -21995100 + (TA)n Simple_repeat Simple_repeat 1 105 0 2140 126 0 10 chr13 97750887 97751196 -21993702 - AluSx SINE Alu -4 308 3 26 0 0 0 chr13 97751727 97751753 -21993145 + AT_rich Low_complexity Low_complexity 1 26 0 1911 147 0 0 chr13 97752764 97753090 -21991808 - AluSx SINE Alu 0 326 1 237 65 0 0 chr13 97754777 97754808 -21990090 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 234 0 0 0 chr13 97755184 97755210 -21989688 + (TG)n Simple_repeat Simple_repeat 1 26 0 305 231 15 0 chr13 97755572 97755637 -21989261 + MLT1I LTR MaLR 70 135 -274 1372 219 47 3 chr13 97755719 97756020 -21988878 + MER63 DNA MER1_type 746 1059 -1 381 316 7 36 chr13 97756044 97756183 -21988715 + MLT1I LTR MaLR 152 286 -123 1706 108 90 36 chr13 97756310 97756643 -21988255 - L1MA8 LINE L1 -5 6286 5936 3669 72 2 2 chr13 97756643 97757125 -21987773 - L1PA7 LINE L1 -5 6149 5662 1308 110 114 0 chr13 97757125 97757353 -21987545 - L1MA8 LINE L1 -362 5929 5676 199 356 42 17 chr13 97757790 97757908 -21986990 + L2 LINE L2 3192 3312 -1 384 271 132 16 chr13 97758749 97758878 -21986020 + MIR SINE MIR 88 231 -31 1989 197 43 47 chr13 97759370 97759862 -21985036 - MER67D LTR ERV1 -3 511 22 1948 110 0 31 chr13 97762371 97762662 -21982236 + AluSx SINE Alu 1 282 -30 233 354 21 31 chr13 97763152 97763248 -21981650 + MIR SINE MIR 40 134 -74 1245 206 65 49 chr13 97763813 97764244 -21980654 - LTR47B LTR ERVL -2 441 4 216 387 11 11 chr13 97764264 97764357 -21980541 + MIR SINE MIR 36 128 -134 181 339 0 16 chr13 97764567 97764629 -21980269 + L2 LINE L2 1698 1758 -1556 514 221 14 57 chr13 97764856 97764996 -21979902 - L2 LINE L2 0 3313 3180 2146 222 106 34 chr13 97765874 97765987 -21978911 - Charlie2 DNA MER1_type 0 2862 2759 1681 145 26 15 chr13 97765987 97766256 -21978642 + AluSx SINE Alu 19 290 -22 2146 222 106 34 chr13 97766256 97766943 -21977955 - Charlie2 DNA MER1_type -103 2759 2004 193 258 32 32 chr13 97769468 97769530 -21975368 + L2 LINE L2 3251 3312 -1 204 179 0 0 chr13 97770797 97770836 -21974062 + (TATG)n Simple_repeat Simple_repeat 4 42 0 2176 115 3 0 chr13 97770934 97771246 -21973652 - AluSp SINE Alu 0 313 1 22 35 0 0 chr13 97771566 97771595 -21973303 + AT_rich Low_complexity Low_complexity 1 29 0 4176 196 54 30 chr13 97772094 97773496 -21971402 - L1MB7 LINE L1 0 6682 5251 2158 178 31 0 chr13 97773512 97773934 -21970964 - L1MB1 LINE L1 -35 6133 5699 383 113 0 0 chr13 97773934 97773987 -21970911 - Charlie3 DNA MER1_type -2520 190 138 350 169 0 0 chr13 97774011 97774070 -21970828 - L1MB1 LINE L1 -489 5679 5621 2699 254 97 27 chr13 97774070 97774430 -21970468 - L1MB7 LINE L1 -1369 5275 4942 2310 90 7 0 chr13 97774430 97774729 -21970169 - AluSq SINE Alu -12 301 1 2699 254 97 27 chr13 97774729 97774884 -21970014 - L1MB7 LINE L1 -1702 4942 4799 1906 142 74 6 chr13 97774884 97775223 -21969675 - THE1B LTR MaLR 0 364 3 2699 254 97 27 chr13 97775223 97775272 -21969626 - L1MB7 LINE L1 -1845 4799 4755 1935 117 0 0 chr13 97775272 97775538 -21969360 - AluSg1 SINE Alu -9 300 35 2699 254 97 27 chr13 97775538 97775889 -21969009 - L1MB7 LINE L1 -1889 4755 4278 2163 111 0 3 chr13 97775889 97776187 -21968711 - AluSx SINE Alu -15 297 1 2699 254 97 27 chr13 97776187 97776279 -21968619 - L1MB7 LINE L1 -2366 4278 4194 935 173 74 0 chr13 97776287 97776449 -21968449 + MER1B DNA MER1_type 9 182 -115 2936 185 18 12 chr13 97776611 97776672 -21968226 - MSTB-int LTR MaLR -934 646 587 1909 144 54 25 chr13 97776672 97777026 -21967872 + THE1B LTR MaLR 1 364 0 2936 185 18 12 chr13 97777026 97777630 -21967268 - MSTB-int LTR MaLR -993 587 1 1336 187 67 11 chr13 97777630 97777898 -21967000 - MSTB LTR MaLR 0 426 144 1853 264 60 42 chr13 97777898 97778683 -21966215 + L1M4c LINE L1 1000 1798 -4586 406 100 100 62 chr13 97778853 97778933 -21965965 + Charlie3 DNA MER1_type 2630 2712 0 1395 192 7 0 chr13 97778933 97779235 -21965663 - L1MB7 LINE L1 -2443 4201 3898 1036 239 54 83 chr13 97779237 97779724 -21965174 - MLT1C LTR MaLR 0 593 1 1698 249 86 12 chr13 97779724 97780306 -21964592 - L1MB7 LINE L1 -2778 3866 3242 253 265 38 49 chr13 97780318 97780503 -21964395 - L1MB7 LINE L1 -6358 184 2 180 0 0 0 chr13 97781183 97781203 -21963695 + (TA)n Simple_repeat Simple_repeat 1 20 0 3755 210 46 19 chr13 97781894 97782815 -21962083 - L1MA9 LINE L1 -38 6274 5329 3184 219 61 30 chr13 97783359 97784024 -21960874 + L1MD2 LINE L1 5450 6150 -209 297 0 0 0 chr13 97784024 97784057 -21960841 + (CA)n Simple_repeat Simple_repeat 2 34 0 3184 219 61 30 chr13 97784057 97784264 -21960634 + L1MD2 LINE L1 6150 6349 -10 189 147 0 0 chr13 97785319 97785353 -21959545 + (T)n Simple_repeat Simple_repeat 1 34 0 605 144 0 0 chr13 97785430 97785520 -21959378 - 5S rRNA rRNA -31 90 1 2001 111 73 26 chr13 97786552 97786894 -21958004 - THE1C LTR MaLR 0 375 18 1839 178 3 3 chr13 97787906 97788198 -21956700 + AluJo SINE Alu 3 294 -18 2380 53 0 23 chr13 97789926 97790227 -21954671 - AluY SINE Alu -14 297 4 654 164 0 0 chr13 97790929 97791051 -21953847 + (TG)n Simple_repeat Simple_repeat 2 123 0 180 299 104 122 chr13 97792136 97792300 -21952598 - L2 LINE L2 -74 3198 3038 296 319 64 0 chr13 97792860 97792954 -21951944 - L2 LINE L2 0 3313 3214 549 80 0 0 chr13 97794110 97794185 -21950713 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 33 25 0 0 chr13 97794822 97794862 -21950036 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 97795061 97795083 -21949815 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 97795632 97795653 -21949245 + AT_rich Low_complexity Low_complexity 1 21 0 817 227 120 13 chr13 97797422 97797647 -21947251 - MIR SINE MIR 0 262 14 933 178 9 2 chr13 97797748 97797929 -21946969 + MER3 DNA MER1_type 1 136 -73 365 164 0 0 chr13 97797933 97797994 -21946904 + Charlie5 DNA MER1_type 32 92 -2520 783 105 7 59 chr13 97798000 97798153 -21946745 - L1MA9 LINE L1 0 6312 6168 724 271 43 0 chr13 97798419 97798607 -21946291 + MIR SINE MIR 15 210 -52 3306 221 159 25 chr13 97801754 97801866 -21943032 - L1MC4a LINE L1 -2 7806 7710 2417 117 75 8 chr13 97801866 97802018 -21942880 + MSTA LTR MaLR 1 141 -287 186 43 0 0 chr13 97802018 97802041 -21942857 + (TGAG)n Simple_repeat Simple_repeat 3 25 0 2417 117 75 8 chr13 97802041 97802289 -21942609 + MSTA LTR MaLR 141 428 0 3306 221 159 25 chr13 97802289 97803237 -21941661 - L1MC4a LINE L1 -98 7710 6604 26 30 0 0 chr13 97803256 97803289 -21941609 + AT_rich Low_complexity Low_complexity 1 33 0 560 186 47 51 chr13 97803297 97803506 -21941392 - L1MC4a LINE L1 -2 7806 6132 * 3581 238 77 33 chr13 97803493 97804237 -21940661 - L1MC4a LINE L1 -718 5615 5811 869 62 78 8 chr13 97804237 97804365 -21940533 - MER85 DNA T2_type -2 137 1 3581 238 77 33 chr13 97804365 97804773 -21940125 - L1MC4a LINE L1 -521 5812 5423 30 0 0 0 chr13 97804972 97805002 -21939896 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 97805317 97805338 -21939560 + AT_rich Low_complexity Low_complexity 1 21 0 543 255 163 16 chr13 97805808 97805992 -21938906 - MIR SINE MIR -49 213 3 186 284 216 0 chr13 97806711 97806813 -21938085 + MIR SINE MIR 86 209 -53 276 384 0 23 chr13 97808459 97808592 -21936306 - L2 LINE L2 0 3272 3143 1515 192 14 34 chr13 97808888 97809185 -21935713 + AluJo SINE Alu 7 297 -15 887 284 113 18 chr13 97809436 97809710 -21935188 + L2 LINE L2 2885 3208 -105 1948 131 58 45 chr13 97809710 97810069 -21934829 + THE1B LTR MaLR 1 364 0 887 284 113 18 chr13 97810069 97810182 -21934716 + L2 LINE L2 3208 3309 -4 314 328 32 116 chr13 97811946 97812230 -21932668 - L2 LINE L2 -79 3193 2934 25 0 0 0 chr13 97813365 97813390 -21931508 + AT_rich Low_complexity Low_complexity 1 25 0 319 203 51 25 chr13 97813516 97813595 -21931303 - MER94 DNA DNA -51 83 3 794 162 45 7 chr13 97814297 97814451 -21930447 - MER5A DNA MER1_type -29 160 1 192 246 18 18 chr13 97815942 97815999 -21928899 + MIR3 SINE MIR 120 176 -32 189 121 0 0 chr13 97818295 97818328 -21926570 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1804 179 19 22 chr13 97819482 97819846 -21925052 - MLT1A1 LTR MaLR -2 363 1 645 231 37 90 chr13 97820099 97820367 -21924531 + L2 LINE L2 3059 3312 -1 2119 121 3 0 chr13 97822150 97822472 -21922426 - AluSx SINE Alu 0 323 1 392 327 39 13 chr13 97823979 97824135 -21920763 + MIR3 SINE MIR 25 184 -24 213 425 8 0 chr13 97825585 97825705 -21919193 + MIR SINE MIR 33 153 -109 221 208 113 0 chr13 97825729 97825782 -21919116 - L2 LINE L2 0 3313 3255 186 337 10 40 chr13 97826039 97826140 -21918758 - L3 LINE CR1 -1090 487 390 196 309 95 0 chr13 97826618 97826702 -21918196 - L2 LINE L2 -25 3247 3156 322 329 87 47 chr13 97827203 97827352 -21917546 - MIR3 SINE MIR -52 156 2 279 71 0 0 chr13 97827383 97827425 -21917473 + (TC)n Simple_repeat Simple_repeat 2 43 0 587 71 12 0 chr13 97827483 97827568 -21917330 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 2430 119 5 24 chr13 97827983 97828354 -21916544 - THE1B LTR MaLR 0 364 1 11963 94 2 0 chr13 97828354 97829931 -21914967 - THE1B-int LTR MaLR 0 1580 1 2358 129 5 30 chr13 97829931 97830304 -21914594 - THE1B LTR MaLR 0 364 1 415 314 221 25 chr13 97830436 97830793 -21914105 + L3 LINE CR1 1148 1574 -3 458 243 9 9 chr13 97830887 97830998 -21913900 + MER117 DNA MER1_type 52 162 -35 2108 100 4 4 chr13 97832262 97832573 -21912325 - AluSc SINE Alu 0 311 1 239 358 39 60 chr13 97832607 97832939 -21911959 - L2 LINE L2 -56 3216 2892 202 206 0 0 chr13 97835134 97835168 -21909730 + (TG)n Simple_repeat Simple_repeat 2 35 0 704 160 20 27 chr13 97835168 97835318 -21909580 - L1MA10 LINE L1 -10 6324 6176 7934 174 18 22 chr13 97835370 97837836 -21907062 - L1MB1 LINE L1 -26 6163 3709 4586 204 26 6 chr13 97837833 97838888 -21906010 + L1MB1 LINE L1 2634 3709 -2437 * 799 227 217 11 chr13 97838903 97839180 -21905718 - MER2 DNA MER2_type -11 334 1 351 306 61 27 chr13 97839696 97839843 -21905055 + L2 LINE L2 3121 3272 0 1548 209 57 14 chr13 97840470 97840820 -21904078 - MLT1A2 LTR MaLR -9 365 1 2259 117 0 0 chr13 97841761 97842060 -21902838 - AluSx SINE Alu -11 301 3 676 265 122 24 chr13 97842947 97843032 -21901866 + L2 LINE L2 2999 3074 -239 2224 85 0 0 chr13 97843032 97843339 -21901559 - AluY SINE Alu 0 307 1 676 265 122 24 chr13 97843339 97843539 -21901359 + L2 LINE L2 3074 3313 0 279 268 27 60 chr13 97844591 97844709 -21900189 - MIR SINE MIR -35 173 47 2530 73 0 0 chr13 97844963 97845266 -21899632 + AluSg SINE Alu 1 303 -7 194 322 87 60 chr13 97845555 97845738 -21899160 - MIR SINE MIR -73 189 2 183 232 0 0 chr13 97845943 97845999 -21898899 + T-rich Low_complexity Low_complexity 1 56 0 254 321 193 19 chr13 97847418 97847630 -21897268 - MIR SINE MIR 0 262 14 575 175 0 0 chr13 97848047 97848144 -21896754 - MER82 DNA MER2_type -531 122 26 21 0 0 0 chr13 97848232 97848253 -21896645 + AT_rich Low_complexity Low_complexity 1 21 0 789 149 0 30 chr13 97848327 97848461 -21896437 + FLAM_C SINE Alu 2 131 -2 495 107 0 0 chr13 97848463 97848538 -21896360 + (GGGGA)n Simple_repeat Simple_repeat 4 78 0 1683 211 77 11 chr13 97849432 97849811 -21895087 + MER82 DNA MER2_type 250 653 0 1956 175 50 15 chr13 97849818 97849945 -21894953 + MER95 LTR ERV 14 135 -296 2544 106 20 0 chr13 97849945 97850302 -21894596 - THE1B LTR MaLR 0 364 1 1956 175 50 15 chr13 97850302 97850573 -21894325 + MER95 LTR ERV 135 426 -5 399 301 103 20 chr13 97850596 97850742 -21894156 - MIR SINE MIR -71 191 34 318 26 0 0 chr13 97851816 97851855 -21893043 + (TG)n Simple_repeat Simple_repeat 2 40 0 5933 149 32 16 chr13 97851887 97853637 -21891261 - L1MA9 LINE L1 -1 6311 4540 646 181 114 0 chr13 97854771 97854937 -21889961 + MER53 DNA DNA 4 188 -1 1434 188 34 0 chr13 97855275 97855568 -21889330 - MER33 DNA MER1_type -21 303 1 183 167 76 30 chr13 97855654 97855720 -21889178 - L2 LINE L2 -638 2676 2608 298 309 50 29 chr13 97856392 97856531 -21888367 - MIR SINE MIR -42 220 79 324 221 59 0 chr13 97856948 97857016 -21887882 + MIR SINE MIR 173 244 -18 2461 45 0 16 chr13 97857142 97857450 -21887448 + AluY SINE Alu 1 303 -8 905 135 12 6 chr13 97857452 97857615 -21887283 + L1MB2 LINE L1 6004 6167 -4 22 35 0 0 chr13 97858349 97858378 -21886520 + AT_rich Low_complexity Low_complexity 1 29 0 1004 144 48 0 chr13 97859856 97860043 -21884855 + L1PA14 LINE L1 5966 6161 0 260 200 62 15 chr13 97860069 97860134 -21884764 - MIR SINE MIR -119 143 76 220 276 71 71 chr13 97860896 97860994 -21883904 - L2 LINE L2 -18 3254 3157 25 51 0 0 chr13 97861977 97862016 -21882882 + AT_rich Low_complexity Low_complexity 1 39 0 336 284 5 0 chr13 97862703 97862789 -21882109 + MIR SINE MIR 34 121 -102 7188 47 6 1 chr13 97862808 97864213 -21880685 - L1PA5 LINE L1 0 6154 4746 6360 32 5 0 chr13 97864213 97864982 -21879916 + L1PA5 LINE L1 3962 4734 -1412 1521 161 0 54 chr13 97865019 97865299 -21879599 + AluJo SINE Alu 26 290 -22 224 370 34 24 chr13 97865399 97865694 -21879204 - L2 LINE L2 -1018 2296 1999 602 224 97 0 chr13 97865700 97865865 -21879033 + MER20 DNA MER1_type 3 183 -36 349 228 13 0 chr13 97866101 97866180 -21878718 + MER20 DNA MER1_type 137 216 -3 197 176 0 20 chr13 97866436 97866487 -21878411 + GA-rich Low_complexity Low_complexity 4 53 0 222 150 0 0 chr13 97867475 97867515 -21877383 + (T)n Simple_repeat Simple_repeat 1 40 0 5732 108 16 6 chr13 97867585 97868460 -21876438 + L1PB1 LINE L1 5263 6150 -1 2224 115 0 3 chr13 97868482 97868787 -21876111 + AluSq SINE Alu 3 306 -7 246 62 0 0 chr13 97869984 97870016 -21874882 + (A)n Simple_repeat Simple_repeat 1 32 0 433 265 96 36 chr13 97870725 97871169 -21873729 - L1ME LINE L1 -458 5712 5232 1122 84 7 0 chr13 97871239 97871435 -21873463 + L1PA8 LINE L1 6002 6198 0 233 343 143 9 chr13 97871646 97871751 -21873147 + L2 LINE L2 3150 3268 -4 1986 138 17 3 chr13 97873660 97873957 -21870941 + AluSx SINE Alu 1 301 -11 252 0 0 0 chr13 97874018 97874046 -21870852 + (A)n Simple_repeat Simple_repeat 1 28 0 214 340 7 0 chr13 97874049 97874153 -21870745 - MIR SINE MIR -63 145 55 460 322 110 4 chr13 97874700 97874927 -21869971 - MIR SINE MIR -11 251 1 288 384 0 0 chr13 97876189 97876275 -21868623 - L2 LINE L2 -27 3245 3160 22 0 0 0 chr13 97876847 97876869 -21868029 + AT_rich Low_complexity Low_complexity 1 22 0 242 341 12 0 chr13 97877509 97877591 -21867307 - L2 LINE L2 0 3272 3190 2594 112 5 8 chr13 97878026 97878402 -21866496 + THE1C LTR MaLR 1 375 0 276 30 0 0 chr13 97878901 97878914 -21865984 + (TG)n Simple_repeat Simple_repeat 1 46 0 276 30 0 0 chr13 97878914 97878947 -21865951 + (TG)n Simple_repeat Simple_repeat 2 34 0 1296 239 32 37 chr13 97879053 97879459 -21865439 - L2 LINE L2 0 3313 2910 374 258 147 37 chr13 97879616 97879677 -21865221 - L2 LINE L2 -482 2832 2779 1607 185 82 34 chr13 97879677 97880093 -21864805 + MER63B DNA MER1_type 1 436 0 374 258 147 37 chr13 97880093 97880221 -21864677 - L2 LINE L2 -535 2779 2622 24 0 0 0 chr13 97882043 97882067 -21862831 + AT_rich Low_complexity Low_complexity 1 24 0 217 282 162 8 chr13 97882135 97882252 -21862646 - MIR SINE MIR -13 249 115 265 356 35 35 chr13 97884243 97884358 -21860540 - L2 LINE L2 0 3272 3158 1725 162 3 23 chr13 97886018 97886321 -21858577 + AluJo SINE Alu 3 299 -13 2255 140 94 5 chr13 97887132 97887525 -21857373 + MSTA LTR MaLR 1 428 0 1108 304 36 16 chr13 97888288 97888676 -21856222 - MLT1I LTR MaLR 0 409 14 1122 262 75 62 chr13 97889181 97889709 -21855189 + LTR33A LTR ERVL 1 521 -2 25 31 0 0 chr13 97891235 97891267 -21853631 + AT_rich Low_complexity Low_complexity 1 32 0 287 312 23 58 chr13 97891612 97891785 -21853113 + MIR SINE MIR 54 220 -42 228 286 18 0 chr13 97893026 97893082 -21851816 - L2 LINE L2 -2 3311 3255 225 0 0 0 chr13 97893189 97893214 -21851684 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr13 97893337 97893366 -21851532 + AT_rich Low_complexity Low_complexity 1 29 0 239 265 68 77 chr13 97895770 97895887 -21849011 - L2 LINE L2 -214 3058 2943 518 333 65 70 chr13 97896254 97896351 -21848547 - L2 LINE L2 -458 2856 2760 2479 74 0 0 chr13 97896351 97896650 -21848248 + AluY SINE Alu 2 300 -11 518 333 65 70 chr13 97896650 97897225 -21847673 - L2 LINE L2 -554 2760 2187 474 230 43 99 chr13 97897731 97897892 -21847006 - MER5A DNA MER1_type -36 153 2 1616 131 0 0 chr13 97897990 97898226 -21846672 + MER46A DNA MER2_type 1 236 0 190 363 59 66 chr13 97898736 97899039 -21845859 - L2 LINE L2 -22 3250 2950 360 211 106 10 chr13 97899142 97899246 -21845652 + L1PB4 LINE L1 6042 6155 -1 414 274 65 0 chr13 97900402 97900526 -21844372 - MIR SINE MIR -28 234 103 27 0 0 0 chr13 97900830 97900857 -21844041 + AT_rich Low_complexity Low_complexity 1 27 0 1625 181 50 12 chr13 97900922 97901259 -21843639 - MER4D LTR ERV1 -5 898 549 1635 160 43 0 chr13 97901294 97901576 -21843322 - MER49 LTR ERV1 -629 294 1 2311 91 7 0 chr13 97902750 97903046 -21841852 - AluSc SINE Alu -11 298 1 25 75 0 0 chr13 97903061 97903114 -21841784 + AT_rich Low_complexity Low_complexity 1 53 0 1557 154 46 39 chr13 97903528 97903813 -21841085 + AluJb SINE Alu 1 287 -25 22 0 0 0 chr13 97903813 97903835 -21841063 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr13 97904326 97904366 -21840532 + (CA)n Simple_repeat Simple_repeat 2 41 0 321 26 0 0 chr13 97904458 97904496 -21840402 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr13 97904787 97904817 -21840081 + AT_rich Low_complexity Low_complexity 1 30 0 342 283 132 19 chr13 97904940 97905046 -21839852 + L2 LINE L2 3190 3307 -6 545 42 14 0 chr13 97905047 97905119 -21839779 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 217 377 0 53 chr13 97905332 97905446 -21839452 - MIR3 SINE MIR -18 190 83 274 49 0 0 chr13 97905448 97905489 -21839409 + L1PA16 LINE L1 6126 6166 0 346 328 32 16 chr13 97906064 97906189 -21838709 + L2 LINE L2 3138 3264 -8 427 287 165 16 chr13 97907309 97907497 -21837401 + MIR SINE MIR 46 261 -1 293 329 42 24 chr13 97907525 97907691 -21837207 + MIR3 SINE MIR 12 180 -28 180 0 0 0 chr13 97908597 97908617 -21836281 + (TTA)n Simple_repeat Simple_repeat 2 21 0 378 283 79 20 chr13 97908730 97908882 -21836016 + MIR SINE MIR 72 232 -30 238 341 181 28 chr13 97909981 97910518 -21834380 + L2 LINE L2 2359 2977 -337 24 0 0 0 chr13 97911792 97911816 -21833082 + AT_rich Low_complexity Low_complexity 1 24 0 311 364 18 0 chr13 97912225 97912335 -21832563 + MIR SINE MIR 28 139 -123 545 214 175 7 chr13 97913633 97913787 -21831111 + MER5A DNA MER1_type 9 188 -1 180 213 0 115 chr13 97914494 97914555 -21830343 + MIR SINE MIR 18 71 -137 610 309 137 27 chr13 97914866 97915419 -21829479 + L2 LINE L2 2055 2668 -646 288 326 74 32 chr13 97915568 97915758 -21829140 + L2 LINE L2 2665 2862 -452 278 321 186 0 chr13 97915859 97915999 -21828899 - MIR SINE MIR -65 197 32 221 198 12 0 chr13 97916282 97916368 -21828530 + (TA)n Simple_repeat Simple_repeat 2 88 0 576 277 52 38 chr13 97916987 97917200 -21827698 + MIR SINE MIR 8 223 -39 274 311 110 62 chr13 97917456 97917910 -21826988 - L2 LINE L2 -445 2869 2394 417 280 0 40 chr13 97919049 97919174 -21825724 + MIR SINE MIR 33 152 -110 2012 152 33 30 chr13 97919210 97919573 -21825325 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr13 97919900 97919921 -21824977 + AT_rich Low_complexity Low_complexity 1 21 0 1809 173 18 26 chr13 97919939 97920280 -21824618 + MER44D DNA MER2_type 1 608 -1 639 214 126 6 chr13 97920345 97920504 -21824394 - MER45A DNA AcHobo 0 178 1 428 284 85 53 chr13 97921625 97921687 -21823211 - MLT1K LTR MaLR -1 614 555 2165 125 19 32 chr13 97921687 97922056 -21822842 - THE1B LTR MaLR 0 364 1 428 284 85 53 chr13 97922056 97922543 -21822355 - MLT1K LTR MaLR -60 555 34 701 200 31 129 chr13 97923111 97923461 -21821437 - L1MC5 LINE L1 -35 7926 7611 203 372 18 26 chr13 97924002 97924115 -21820783 + MIR SINE MIR 29 140 -122 219 248 130 0 chr13 97924254 97924341 -21820557 - MIR SINE MIR -63 145 75 1636 128 0 11 chr13 97924872 97925155 -21819743 + L1PB1 LINE L1 5547 5790 -361 333 118 0 0 chr13 97925155 97925206 -21819692 + (TA)n Simple_repeat Simple_repeat 2 52 0 2587 96 8 0 chr13 97925206 97925571 -21819327 + L1PB1 LINE L1 5782 6149 -2 357 291 112 59 chr13 97927521 97927808 -21817090 - L2 LINE L2 -263 3009 2721 431 302 99 16 chr13 97927943 97928125 -21816773 - MIR SINE MIR -49 213 17 531 105 19 76 chr13 97928462 97928567 -21816331 + ORSL DNA AcHobo 1 99 -176 272 209 15 0 chr13 97928567 97928634 -21816264 + (TA)n Simple_repeat Simple_repeat 2 69 0 385 157 95 61 chr13 97928634 97928781 -21816117 + ORSL DNA AcHobo 63 214 -61 742 264 61 0 chr13 97932398 97932595 -21812303 + MER58A DNA MER1_type 1 209 -15 821 278 94 33 chr13 97932881 97933244 -21811654 + L3 LINE CR1 885 1269 -308 276 324 43 22 chr13 97933292 97933431 -21811467 + L3 LINE CR1 1435 1576 -1 1698 244 107 32 chr13 97934779 97935127 -21809771 - L1ME3 LINE L1 -16 6146 5825 800 243 82 15 chr13 97935127 97935333 -21809565 - MER58A DNA MER1_type -3 221 2 1698 244 107 32 chr13 97935333 97935697 -21809201 - L1ME3 LINE L1 -337 5825 5381 312 192 16 8 chr13 97935705 97935830 -21809068 + (TA)n Simple_repeat Simple_repeat 2 127 0 345 24 0 0 chr13 97935877 97935919 -21808979 + (GA)n Simple_repeat Simple_repeat 2 43 0 332 174 112 10 chr13 97935951 97936049 -21808849 - L1ME3 LINE L1 -826 5320 5213 21 36 0 0 chr13 97937812 97937840 -21807058 + AT_rich Low_complexity Low_complexity 1 28 0 2037 89 74 0 chr13 97937947 97938218 -21806680 - AluSg SINE Alu -19 291 1 309 338 25 13 chr13 97938397 97938554 -21806344 + L1ME4a LINE L1 5957 6115 -6 200 344 65 11 chr13 97939266 97939359 -21805539 - MIR SINE MIR -74 134 37 240 35 0 0 chr13 97940800 97940829 -21804069 + (GA)n Simple_repeat Simple_repeat 2 30 0 532 244 205 0 chr13 97940859 97941015 -21803883 - MER5A DNA MER1_type 0 189 2 1448 65 5 14 chr13 97941136 97941352 -21803546 + MER11A LTR ERVK 1053 1266 0 265 374 66 35 chr13 97941401 97941599 -21803299 - MIR3 SINE MIR -3 205 2 473 296 76 17 chr13 97941752 97941924 -21802974 - MIR SINE MIR -13 249 68 21 0 0 0 chr13 97942660 97942681 -21802217 + AT_rich Low_complexity Low_complexity 1 21 0 1787 153 11 11 chr13 97942712 97942999 -21801899 - AluJo SINE Alu -25 287 1 3510 167 6 20 chr13 97942999 97943693 -21801205 - L1MB4 LINE L1 -43 6137 5454 4908 151 9 25 chr13 97943826 97945192 -21799706 + L1PA16 LINE L1 4795 6166 0 22 56 0 0 chr13 97945418 97945454 -21799444 + AT_rich Low_complexity Low_complexity 1 36 0 2250 63 0 0 chr13 97945732 97946002 -21798896 + AluY SINE Alu 33 302 -9 616 269 8 0 chr13 97947522 97947656 -21797242 - L2 LINE L2 0 3313 3179 278 310 116 23 chr13 97948716 97948845 -21796053 - MIR3 SINE MIR -57 151 11 2332 81 0 0 chr13 97949661 97949956 -21794942 + AluY SINE Alu 1 295 -16 1918 114 50 0 chr13 97949963 97950244 -21794654 + AluSx SINE Alu 1 295 -17 1005 265 13 3 chr13 97950401 97950707 -21794191 + L1MC4 LINE L1 7581 7889 -153 341 201 29 86 chr13 97950871 97951010 -21793888 + L1MC4 LINE L1 7902 8032 -10 21 36 0 0 chr13 97951958 97951986 -21792912 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chr13 97952984 97953020 -21791878 + (TG)n Simple_repeat Simple_repeat 2 37 0 204 161 0 65 chr13 97954043 97954105 -21790793 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 598 155 113 18 chr13 97954130 97954298 -21790600 - MER53 DNA DNA -5 184 1 192 228 0 0 chr13 97954301 97954358 -21790540 + (TG)n Simple_repeat Simple_repeat 2 58 0 2259 102 0 3 chr13 97954358 97954681 -21790217 + L1PB1 LINE L1 5828 6149 -2 248 91 23 0 chr13 97954764 97954808 -21790090 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 179 0 0 chr13 97954820 97954859 -21790039 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 534 276 13 13 chr13 97955458 97955614 -21789284 + MIR SINE MIR 86 241 -21 26 50 0 0 chr13 97956167 97956207 -21788691 + AT_rich Low_complexity Low_complexity 1 40 0 1609 209 30 19 chr13 97957272 97957641 -21787257 - MLT1A2 LTR MaLR -1 373 1 295 294 10 20 chr13 97958225 97958327 -21786571 + MIR3 SINE MIR 105 205 -3 286 318 35 0 chr13 97959363 97959448 -21785450 + MIR SINE MIR 98 185 -77 581 218 141 58 chr13 97959464 97959670 -21785228 + MIR SINE MIR 40 262 0 2138 138 3 0 chr13 97959796 97960094 -21784804 + AluSq SINE Alu 1 299 -14 2305 102 0 0 chr13 97961590 97961885 -21783013 + AluSg SINE Alu 1 295 -15 2167 116 42 33 chr13 97962216 97962577 -21782321 - THE1B LTR MaLR 0 364 1 282 263 52 62 chr13 97963612 97963806 -21781092 - L1MEd LINE L1 -4883 1236 1045 858 211 53 5 chr13 97965793 97966002 -21778896 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr13 97966062 97966084 -21778814 + AT_rich Low_complexity Low_complexity 1 22 0 1496 242 70 53 chr13 97966404 97966493 -21778405 + MER74B LTR ERVL 85 171 -451 1821 174 3 0 chr13 97966493 97966792 -21778106 + AluJo SINE Alu 1 300 -12 1496 242 70 53 chr13 97966792 97967231 -21777667 + MER74B LTR ERVL 171 622 0 350 261 45 18 chr13 97967286 97967397 -21777501 - MIR SINE MIR -78 184 71 323 328 23 30 chr13 97967630 97967761 -21777137 + MIR3 SINE MIR 10 139 -69 268 119 179 15 chr13 97967775 97967842 -21777056 + MADE1 DNA Mariner 1 78 -2 252 196 0 0 chr13 97968029 97968075 -21776823 - L2 LINE L2 0 3272 3227 390 288 117 18 chr13 97968162 97968325 -21776573 + MIR SINE MIR 83 261 -1 309 321 36 48 chr13 97968331 97968496 -21776402 - L2 LINE L2 -188 3084 2922 1231 173 58 73 chr13 97968562 97968875 -21776023 + AluJo SINE Alu 2 309 -3 30 0 0 0 chr13 97969741 97969771 -21775127 + AT_rich Low_complexity Low_complexity 1 30 0 1665 191 0 7 chr13 97969771 97970069 -21774829 - AluJo SINE Alu -16 296 1 2277 114 0 0 chr13 97970079 97970377 -21774521 - AluSx SINE Alu -13 299 2 184 0 77 77 chr13 97971067 97971106 -21773792 + T-rich Low_complexity Low_complexity 2 40 0 339 347 25 0 chr13 97971535 97971656 -21773242 - MIR SINE MIR -102 160 37 435 275 29 53 chr13 97972659 97972797 -21772101 - MIR SINE MIR -44 218 82 2283 85 0 0 chr13 97972797 97973103 -21771795 + AluSg SINE Alu 1 306 0 435 275 29 53 chr13 97973103 97973134 -21771764 - MIR SINE MIR -180 82 52 1816 222 78 19 chr13 97973324 97973837 -21771061 - MLT1H LTR MaLR -4 545 3 317 225 111 9 chr13 97976837 97976943 -21767955 + MIR SINE MIR 30 159 -62 476 265 139 35 chr13 97977656 97977886 -21767012 + MIR SINE MIR 7 260 -2 398 279 26 37 chr13 97978676 97978866 -21766032 - MER5A DNA MER1_type 0 189 2 2516 157 56 14 chr13 97979509 97979994 -21764904 - LTR45 LTR ERV1 0 525 21 1531 224 91 27 chr13 97980453 97980891 -21764007 - MLT1C LTR MaLR -1 466 1 321 309 42 34 chr13 97983300 97983479 -21761419 - MIR SINE MIR -63 145 17 306 286 152 12 chr13 97983531 97983702 -21761196 - MIR SINE MIR -23 239 45 1895 175 89 2 chr13 97983708 97984033 -21760865 - MER82 DNA MER2_type -6 647 281 180 111 0 0 chr13 97984033 97984060 -21760838 + (CTGTG)n Simple_repeat Simple_repeat 1 27 0 1895 175 89 2 chr13 97984060 97984129 -21760769 - MER82 DNA MER2_type -372 281 219 252 0 0 0 chr13 97984178 97984206 -21760692 + (TA)n Simple_repeat Simple_repeat 2 29 0 8253 118 11 11 chr13 97984214 97985515 -21759383 - HSMAR2 DNA Mariner 0 1302 1 250 204 21 32 chr13 97985515 97985602 -21759296 + (TA)n Simple_repeat Simple_repeat 2 87 0 919 184 21 21 chr13 97985602 97985792 -21759106 - MER82 DNA MER2_type -450 203 14 1489 147 19 11 chr13 97986203 97986468 -21758430 + L1MA6 LINE L1 6001 6267 -33 355 323 71 18 chr13 97986826 97987010 -21757888 + MIR3 SINE MIR 9 198 -57 24 0 0 0 chr13 97987094 97987118 -21757780 + AT_rich Low_complexity Low_complexity 1 24 0 264 320 234 0 chr13 97987324 97987452 -21757446 + MER91A DNA MER1_type 34 191 -5 974 267 69 27 chr13 97987570 97987945 -21756953 - MLT1I LTR MaLR -4 405 15 439 282 56 14 chr13 97987947 97988089 -21756809 + L3 LINE CR1 888 1035 -542 367 385 64 0 chr13 97989925 97990112 -21754786 + MIR SINE MIR 20 218 -44 212 329 29 14 chr13 97990161 97990231 -21754667 - MIR SINE MIR -60 148 78 379 272 140 0 chr13 97990732 97990868 -21754030 - MIR SINE MIR 0 262 108 321 284 0 73 chr13 97990988 97991097 -21753801 + L2 LINE L2 3213 3313 0 25 0 0 0 chr13 97991698 97991723 -21753175 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 97991798 97991820 -21753078 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr13 97992908 97992934 -21751964 + (T)n Simple_repeat Simple_repeat 1 26 0 2716 204 2 2 chr13 97993334 97993878 -21751020 + MER44D DNA MER2_type 7 605 0 1497 158 60 9 chr13 97994723 97995039 -21749859 + L1MB1 LINE L1 5834 6165 -3 388 265 0 20 chr13 97995772 97995870 -21749028 - MIR3 SINE MIR -2 206 111 220 291 101 0 chr13 97996116 97996195 -21748703 - MIR SINE MIR -77 185 99 371 211 11 0 chr13 97997191 97997286 -21747612 + CT-rich Low_complexity Low_complexity 1 96 0 1781 309 108 17 chr13 97997413 97998365 -21746533 - L2 LINE L2 -234 3079 2042 229 319 215 22 chr13 98000047 98000182 -21744716 - MER91A DNA MER1_type -35 161 1 492 318 56 5 chr13 98000407 98000546 -21744352 - L2 LINE L2 0 3313 3160 293 0 27 0 chr13 98000546 98000583 -21744315 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 492 318 56 5 chr13 98000583 98000638 -21744260 - L2 LINE L2 -153 3160 3109 270 312 132 16 chr13 98000634 98000823 -21744075 - L2 LINE L2 -387 2927 2717 * 1502 209 66 9 chr13 98000901 98001250 -21743648 + MLT1A2 LTR MaLR 6 374 0 2983 31 0 0 chr13 98001840 98002192 -21742706 - L1PA5 LINE L1 0 6154 5803 2401 31 0 0 chr13 98002192 98002481 -21742417 + L1PA5 LINE L1 5519 5807 -347 277 237 97 44 chr13 98004251 98004365 -21740533 + MIR3 SINE MIR 69 188 -20 26 0 0 0 chr13 98004792 98004818 -21740080 + AT_rich Low_complexity Low_complexity 1 26 0 7609 204 27 28 chr13 98004821 98005198 -21739700 - L1MA9 LINE L1 -38 6274 5898 1601 186 3 50 chr13 98005198 98005516 -21739382 + AluJo SINE Alu 1 303 -9 7609 204 27 28 chr13 98005516 98005636 -21739262 - L1MA9 LINE L1 -414 5898 5779 270 56 0 0 chr13 98005636 98005672 -21739226 + (TG)n Simple_repeat Simple_repeat 1 36 0 7609 204 27 28 chr13 98005672 98007746 -21737152 - L1MA9 LINE L1 -533 5779 3701 1063 182 0 6 chr13 98007746 98007922 -21736976 - FAM SINE Alu 0 175 1 7609 204 27 28 chr13 98007922 98008041 -21736857 - L1MA9 LINE L1 -2611 3701 3583 207 0 0 0 chr13 98008596 98008619 -21736279 + (GA)n Simple_repeat Simple_repeat 1 23 0 234 316 0 20 chr13 98009443 98009541 -21735357 - MIR SINE MIR -50 212 117 372 240 0 10 chr13 98009795 98009895 -21735003 + MER117 DNA MER1_type 78 176 -21 257 339 39 15 chr13 98009968 98010098 -21734800 - L2 LINE L2 -2 3311 3179 488 185 6 110 chr13 98010609 98010782 -21734116 + L1MC5 LINE L1 7759 7913 -48 3120 90 14 0 chr13 98010954 98011398 -21733500 + L1PA8 LINE L1 5718 6167 -5 25 31 0 0 chr13 98014444 98014476 -21730422 + AT_rich Low_complexity Low_complexity 1 32 0 453 233 8 0 chr13 98015819 98015924 -21728974 + MER5A DNA MER1_type 4 109 -80 305 328 8 41 chr13 98016677 98016799 -21728099 - L3 LINE CR1 -107 1470 1353 338 266 153 0 chr13 98018709 98018833 -21726065 - MLT1L LTR MaLR -121 494 352 581 235 180 9 chr13 98019105 98019322 -21725576 - MLT1L LTR MaLR -341 274 21 1820 191 42 31 chr13 98019441 98019803 -21725095 - L1MB3 LINE L1 -42 6141 5771 276 100 0 0 chr13 98019803 98019843 -21725055 + (CA)n Simple_repeat Simple_repeat 2 41 0 1820 191 42 31 chr13 98019843 98019957 -21724941 - L1MB3 LINE L1 -412 5771 5660 2289 151 16 3 chr13 98020234 98020618 -21724280 - MLT1B LTR MaLR 0 390 2 2158 108 3 3 chr13 98020914 98021201 -21723697 + AluSq SINE Alu 2 288 -25 280 241 0 0 chr13 98022004 98022058 -21722840 - L2 LINE L2 -1889 1425 1372 190 313 0 0 chr13 98022064 98022112 -21722786 + L2 LINE L2 3217 3264 -8 329 274 106 0 chr13 98022192 98022305 -21722593 - MER5B DNA MER1_type -53 125 1 2389 100 0 0 chr13 98022312 98022613 -21722285 + AluSx SINE Alu 1 301 -11 218 304 43 22 chr13 98022930 98023022 -21721876 - MIR SINE MIR 0 262 169 180 200 0 0 chr13 98024277 98024312 -21720586 - L3b LINE CR1 -196 1387 1353 2023 150 36 28 chr13 98024653 98025014 -21719884 - THE1B LTR MaLR 0 364 1 3399 66 30 2 chr13 98025104 98025545 -21719353 - MLT2A2 LTR ERVL 0 453 1 230 337 34 0 chr13 98025879 98025968 -21718930 + L2 LINE L2 2232 2323 -991 2530 61 0 0 chr13 98026048 98026389 -21718509 - AluY SINE Alu 0 341 1 218 310 124 26 chr13 98028948 98029061 -21715837 + MIR SINE MIR 116 239 -23 222 333 160 7 chr13 98029740 98029884 -21715014 - MIR3 SINE MIR -1 207 42 388 285 86 11 chr13 98030160 98030427 -21714471 + L1ME4a LINE L1 5640 5926 -195 2653 45 0 6 chr13 98030899 98031212 -21713686 - AluY SINE Alu 0 311 1 318 148 0 0 chr13 98031277 98031331 -21713567 + (CA)n Simple_repeat Simple_repeat 2 55 0 494 271 41 24 chr13 98031442 98031612 -21713286 + MIR SINE MIR 69 241 -21 228 226 0 0 chr13 98031647 98031709 -21713189 + CT-rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chr13 98031991 98032015 -21712883 + AT_rich Low_complexity Low_complexity 1 24 0 2541 81 0 0 chr13 98032360 98032689 -21712209 - AluY SINE Alu 0 329 1 220 344 66 26 chr13 98032734 98032885 -21712013 + MIR3 SINE MIR 3 159 -49 189 250 39 117 chr13 98033083 98033211 -21711687 - MIR SINE MIR -72 136 19 919 304 190 7 chr13 98035023 98035434 -21709464 - L2 LINE L2 -4 3309 2824 352 270 26 9 chr13 98035485 98035600 -21709298 + L1MC/D LINE L1 5122 5238 -908 1299 249 42 23 chr13 98035654 98036084 -21708814 + L1MC/D LINE L1 5291 5728 -2080 19342 116 6 7 chr13 98036390 98040178 -21704720 - L1PA8A LINE L1 0 6131 2337 25 0 0 0 chr13 98040885 98040910 -21703988 + AT_rich Low_complexity Low_complexity 1 25 0 1633 89 0 9 chr13 98041108 98041333 -21703565 - L1PA8 LINE L1 -7 6165 5943 1782 246 99 14 chr13 98041984 98042074 -21702824 - MLT1H1 LTR MaLR 0 555 474 2509 97 10 51 chr13 98042074 98042465 -21702433 - THE1C LTR MaLR 0 375 1 1782 246 99 14 chr13 98042465 98042878 -21702020 - MLT1H1 LTR MaLR -81 474 9 554 359 12 4 chr13 98043127 98043372 -21701526 - MIR SINE MIR -1 261 15 251 122 41 0 chr13 98044796 98044845 -21700053 - L1MB1 LINE L1 -13 6155 6105 25 65 0 0 chr13 98044917 98044963 -21699935 + AT_rich Low_complexity Low_complexity 1 46 0 226 317 49 12 chr13 98045652 98045734 -21699164 - L2 LINE L2 -20 3293 3209 185 0 0 39 chr13 98047925 98047951 -21696947 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 334 274 59 91 chr13 98047951 98048137 -21696761 - L2 LINE L2 -14 3299 3120 490 268 68 93 chr13 98048229 98048550 -21696348 + L2 LINE L2 2617 2929 -385 526 109 66 0 chr13 98048632 98048847 -21696051 + (TA)n Simple_repeat Simple_repeat 1 229 0 354 23 0 0 chr13 98048853 98048896 -21696002 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 221 250 106 100 chr13 98048899 98049059 -21695839 + L2 LINE L2 3152 3312 -1 558 282 80 11 chr13 98049818 98050006 -21694892 + Charlie1a DNA MER1_type 3 203 -1252 1693 171 9 40 chr13 98050064 98050386 -21694512 + AluJo SINE Alu 1 312 0 374 278 139 63 chr13 98051303 98051526 -21693372 - MIR SINE MIR -1 261 22 189 0 0 0 chr13 98051539 98051560 -21693338 + (CCCTAA)n Simple_repeat Simple_repeat 4 24 0 1844 161 35 25 chr13 98052501 98052867 -21692031 + THE1C LTR MaLR 6 375 0 473 340 58 10 chr13 98052908 98053114 -21691784 - MIR SINE MIR -46 216 1 22 0 0 0 chr13 98053717 98053739 -21691159 + AT_rich Low_complexity Low_complexity 1 22 0 352 198 123 0 chr13 98053787 98053868 -21691030 + MIR3 SINE MIR 115 205 -3 424 287 112 11 chr13 98054383 98054571 -21690327 + MIR SINE MIR 7 213 -49 1149 176 125 7 chr13 98055964 98056253 -21688645 + MER63B DNA MER1_type 34 356 -80 250 307 13 0 chr13 98056317 98056392 -21688506 + MER63B DNA MER1_type 360 435 0 222 316 213 7 chr13 98056392 98056547 -21688351 + L2 LINE L2 3031 3217 -55 213 229 16 16 chr13 98057184 98057245 -21687653 + GA-rich Low_complexity Low_complexity 4 64 0 205 307 0 67 chr13 98058126 98058201 -21686697 + MIR SINE MIR 189 258 -4 282 336 73 0 chr13 98058314 98058424 -21686474 - L2 LINE L2 -1 3312 3195 1580 195 15 35 chr13 98058684 98059051 -21685847 + MLT1A1 LTR MaLR 5 426 -2 969 168 0 6 chr13 98060514 98060675 -21684223 + AluJb SINE Alu 133 292 -20 373 250 52 0 chr13 98060851 98060947 -21683951 - MIR SINE MIR -54 208 108 409 259 60 24 chr13 98060949 98061115 -21683783 + L2 LINE L2 2109 2280 -1034 1718 163 45 42 chr13 98061410 98061765 -21683133 - MLT1A1 LTR MaLR -2 363 8 5253 66 42 3 chr13 98061989 98062733 -21682165 - LTR17 LTR ERV1 -7 773 1 180 0 0 0 chr13 98063033 98063053 -21681845 + (A)n Simple_repeat Simple_repeat 1 20 0 206 222 74 0 chr13 98064350 98064404 -21680494 - MIR SINE MIR -68 194 137 3014 179 74 2 chr13 98064409 98065018 -21679880 + MER82 DNA MER2_type 1 653 0 1778 175 24 0 chr13 98066448 98066740 -21678158 - AluJb SINE Alu -12 300 2 753 123 0 23 chr13 98067053 98067183 -21677715 + L1MB1 LINE L1 6041 6167 -1 26 30 0 0 chr13 98069385 98069418 -21675480 + AT_rich Low_complexity Low_complexity 1 33 0 1553 142 0 0 chr13 98070377 98070596 -21674302 - AluSx SINE Alu -93 219 1 351 157 0 0 chr13 98071822 98071892 -21673006 + (CA)n Simple_repeat Simple_repeat 2 71 0 833 280 65 34 chr13 98074406 98074788 -21670110 - MLT1I LTR MaLR -15 394 1 1393 104 85 9 chr13 98074981 98075193 -21669705 - MER30 DNA MER1_type 0 230 3 21 0 0 0 chr13 98075213 98075234 -21669664 + AT_rich Low_complexity Low_complexity 1 21 0 2785 7 0 0 chr13 98075570 98075872 -21669026 + AluYa5 SINE Alu 1 302 -9 264 154 0 0 chr13 98076969 98077021 -21667877 + (TG)n Simple_repeat Simple_repeat 2 53 0 542 121 57 71 chr13 98077457 98077597 -21667301 - Tigger7 DNA MER2_type -131 2456 2319 642 227 0 15 chr13 98077608 98077740 -21667158 - Tigger7 DNA MER2_type -562 171 42 433 164 0 0 chr13 98077737 98077804 -21667094 + Tigger7 DNA MER2_type 33 99 -2388 * 676 283 96 63 chr13 98077830 98079570 -21665328 - L1MEd LINE L1 -3691 2438 636 307 401 29 51 chr13 98079573 98079847 -21665051 - L1MEd LINE L1 -5737 382 115 4016 148 9 8 chr13 98079968 98080632 -21664266 - L1PA15 LINE L1 -6 6159 5495 2148 119 42 31 chr13 98081078 98081438 -21663460 + THE1B LTR MaLR 1 364 0 38 61 0 0 chr13 98081666 98081732 -21663166 + AT_rich Low_complexity Low_complexity 1 66 0 193 271 102 0 chr13 98082331 98082390 -21662508 + MIR SINE MIR 77 141 -121 1264 181 30 23 chr13 98082542 98082807 -21662091 + L1PB4 LINE L1 5890 6156 0 21 0 0 0 chr13 98083365 98083386 -21661512 + AT_rich Low_complexity Low_complexity 1 21 0 215 250 15 0 chr13 98084508 98084576 -21660322 + GA-rich Low_complexity Low_complexity 1 69 0 325 303 91 10 chr13 98085420 98085519 -21659379 - MIR3 SINE MIR -16 192 86 288 0 0 0 chr13 98085579 98085611 -21659287 + (CA)n Simple_repeat Simple_repeat 1 32 0 356 180 324 7 chr13 98085903 98086042 -21658856 - L1MC1 LINE L1 -9 6324 6142 327 293 24 41 chr13 98087504 98087627 -21657271 - MER5A DNA MER1_type -32 157 37 291 288 36 18 chr13 98088185 98088296 -21656602 + MIR3 SINE MIR 70 182 -26 350 73 0 18 chr13 98089116 98089171 -21655727 + (TCC)n Simple_repeat Simple_repeat 2 55 0 246 217 0 0 chr13 98089666 98089712 -21655186 + MIR SINE MIR 77 122 -86 566 310 35 17 chr13 98089717 98089891 -21655007 - MER5B DNA MER1_type 0 178 2 440 236 236 0 chr13 98089903 98090030 -21654868 + MER5A DNA MER1_type 4 160 -29 21 0 0 0 chr13 98090364 98090385 -21654513 + AT_rich Low_complexity Low_complexity 1 21 0 947 257 47 0 chr13 98090540 98090754 -21654144 + MER58A DNA MER1_type 1 224 0 437 297 80 47 chr13 98092953 98093165 -21651733 - MIR SINE MIR -31 231 13 702 247 81 5 chr13 98093505 98093691 -21651207 - MER58A DNA MER1_type -24 200 1 402 309 45 45 chr13 98093699 98093877 -21651021 + MER5B DNA MER1_type 1 178 0 801 204 44 11 chr13 98093892 98094073 -21650825 + MER5A DNA MER1_type 1 187 -2 276 277 18 54 chr13 98094205 98094317 -21650581 + MIR SINE MIR 100 207 -55 189 0 0 0 chr13 98096054 98096075 -21648823 + (CAA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr13 98096691 98096714 -21648184 + AT_rich Low_complexity Low_complexity 1 23 0 2135 126 0 0 chr13 98096812 98097105 -21647793 - AluSx SINE Alu -3 309 17 1776 169 7 10 chr13 98098436 98098737 -21646161 - AluJb SINE Alu -12 300 1 2282 105 3 0 chr13 98099125 98099431 -21645467 - AluSp SINE Alu -1 312 6 2237 107 3 3 chr13 98100676 98100976 -21643922 + AluSq SINE Alu 1 300 -13 275 296 51 0 chr13 98101359 98101457 -21643441 + MER5A DNA MER1_type 1 103 -86 1711 215 73 32 chr13 98101586 98102027 -21642871 + MLT1C LTR MaLR 4 462 -5 2035 134 0 3 chr13 98103112 98103404 -21641494 - AluJb SINE Alu -21 291 1 370 145 0 29 chr13 98103536 98103605 -21641293 - MER96B DNA MER1_type? -211 206 140 1618 226 31 82 chr13 98105153 98105640 -21639258 - MLT1C LTR MaLR -5 462 1 2113 101 10 7 chr13 98105814 98106112 -21638786 + AluSg SINE Alu 1 299 -11 434 288 166 0 chr13 98107726 98107865 -21637033 - MER5A DNA MER1_type 0 189 28 246 302 141 27 chr13 98108188 98108337 -21636561 + L2 LINE L2 2244 2409 -905 218 301 131 44 chr13 98108907 98109136 -21635762 + L2 LINE L2 2804 3052 -220 213 39 0 0 chr13 98109419 98109445 -21635453 + (TA)n Simple_repeat Simple_repeat 2 27 0 218 79 0 26 chr13 98109449 98109487 -21635411 + (TG)n Simple_repeat Simple_repeat 2 38 0 874 232 6 22 chr13 98109606 98109787 -21635111 + MER5B DNA MER1_type 1 178 0 224 209 33 33 chr13 98109971 98110062 -21634836 + (TA)n Simple_repeat Simple_repeat 2 92 0 309 89 0 0 chr13 98111336 98111381 -21633517 + (A)n Simple_repeat Simple_repeat 1 45 0 962 261 117 25 chr13 98111694 98112166 -21632732 + LTR33 LTR ERVL 4 518 -3 184 257 0 0 chr13 98113664 98113699 -21631199 - L2 LINE L2 -16 3297 3263 234 156 0 0 chr13 98114217 98114262 -21630636 + (ATG)n Simple_repeat Simple_repeat 3 47 0 2223 107 3 0 chr13 98114398 98114696 -21630202 - AluSq SINE Alu -14 299 1 349 236 139 30 chr13 98114775 98114940 -21629958 + Charlie8 DNA MER1_type 279 461 -1956 192 225 0 0 chr13 98115026 98115066 -21629832 + L2 LINE L2 3021 3060 -253 1146 83 7 0 chr13 98115148 98115293 -21629605 - L1PA10 LINE L1 -1 6167 6022 3238 86 17 30 chr13 98115400 98115868 -21629030 - L1PA10 LINE L1 -143 6025 5564 441 276 0 53 chr13 98115868 98116020 -21628878 + L2 LINE L2 3151 3294 -19 1047 183 0 6 chr13 98116231 98116406 -21628492 + FRAM SINE Alu 1 166 -10 291 313 97 21 chr13 98116582 98116726 -21628172 + L2 LINE L2 2730 2884 -430 479 320 40 0 chr13 98117321 98117471 -21627427 + L2 LINE L2 3117 3272 0 1981 116 11 0 chr13 98117525 98117801 -21627097 + AluSx SINE Alu 34 312 0 189 0 0 0 chr13 98119822 98119843 -21625055 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 337 284 24 39 chr13 98120299 98120426 -21624472 + MIR SINE MIR 12 136 -126 279 244 53 99 chr13 98120725 98120755 -21624143 + L2 LINE L2 3145 3175 -97 805 236 81 0 chr13 98120755 98120916 -21623982 + MER45A DNA AcHobo 5 178 0 279 244 53 99 chr13 98120916 98121016 -21623882 + L2 LINE L2 3175 3269 -3 1886 56 4 9 chr13 98122368 98122599 -21622299 - L1PA8 LINE L1 -10 6162 5933 267 205 26 13 chr13 98122667 98122745 -21622153 + L1ME3A LINE L1 6090 6168 -2 462 223 0 10 chr13 98123164 98123267 -21621631 + MER33 DNA MER1_type 11 112 -212 1145 202 42 66 chr13 98123269 98123601 -21621297 + MER33 DNA MER1_type 1 324 0 252 355 81 8 chr13 98124108 98124232 -21620666 + L2 LINE L2 3127 3259 -13 262 254 53 105 chr13 98124470 98124584 -21620314 - L2 LINE L2 0 3313 3206 246 293 35 0 chr13 98126577 98126635 -21618263 + L3 LINE CR1 1440 1499 -78 23 0 0 0 chr13 98127269 98127292 -21617606 + AT_rich Low_complexity Low_complexity 1 23 0 2490 77 0 0 chr13 98127353 98127651 -21617247 + AluSc SINE Alu 1 298 -11 201 291 13 38 chr13 98129441 98129520 -21615378 - L2 LINE L2 0 3313 3237 377 317 102 44 chr13 98129808 98130013 -21614885 + L2 LINE L2 3052 3268 -4 441 250 11 44 chr13 98130181 98130361 -21614537 - Charlie7 DNA MER1_type -2 2610 2437 773 260 167 11 chr13 98130514 98130868 -21614030 - Charlie7 DNA MER1_type -2184 428 20 477 232 119 45 chr13 98130925 98131102 -21613796 + MIR SINE MIR 1 190 -72 464 283 44 6 chr13 98131334 98131493 -21613405 - L1MC4 LINE L1 -154 7888 7724 420 159 35 9 chr13 98131560 98131673 -21613225 + CT-rich Low_complexity Low_complexity 2 117 0 43572 32 25 1 chr13 98131729 98137721 -21607177 + L1PA2 LINE L1 1 6169 0 249 0 31 0 chr13 98137721 98137753 -21607145 + (TAA)n Simple_repeat Simple_repeat 3 180 0 319 252 70 14 chr13 98137761 98137904 -21606994 - L1MC5 LINE L1 -543 7418 7268 259 349 34 98 chr13 98139161 98139214 -21605684 - L2 LINE L2 0 3272 3217 380 226 49 10 chr13 98139214 98139316 -21605582 - MER81 DNA DNA -4 110 5 259 349 34 98 chr13 98139316 98139557 -21605341 - L2 LINE L2 -55 3217 2997 2085 254 54 28 chr13 98139960 98140755 -21604143 - L1MC4 LINE L1 -1 8041 7226 1868 151 17 79 chr13 98140762 98141178 -21603720 - MLT1B LTR MaLR 0 390 1 901 128 0 23 chr13 98142979 98143112 -21601786 + AluJb SINE Alu 2 131 -181 1957 146 44 16 chr13 98143249 98143612 -21601286 - THE1C LTR MaLR -2 373 1 264 325 157 12 chr13 98144145 98144311 -21600587 - MIR3 SINE MIR 0 208 19 195 318 32 0 chr13 98144460 98144523 -21600375 - L2 LINE L2 -23 3249 3185 1941 120 0 0 chr13 98144526 98144784 -21600114 + AluSx SINE Alu 40 297 -15 236 325 26 0 chr13 98144925 98145002 -21599896 - L2 LINE L2 -528 2786 2708 189 107 0 0 chr13 98145446 98145474 -21599424 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 639 177 0 0 chr13 98145531 98145627 -21599271 + AluJo SINE Alu 1 96 -216 2307 79 0 3 chr13 98145627 98145919 -21598979 + AluY SINE Alu 21 311 0 1486 170 4 0 chr13 98145919 98146149 -21598749 + AluJo SINE Alu 82 312 0 561 211 143 68 chr13 98147025 98147100 -21597798 - MER5A DNA MER1_type 0 189 121 1330 202 79 12 chr13 98147100 98147260 -21597638 + MLT1A1 LTR MaLR 1 149 -216 315 0 0 0 chr13 98147260 98147295 -21597603 + (TC)n Simple_repeat Simple_repeat 2 36 0 1330 202 79 12 chr13 98147295 98147475 -21597423 + MLT1A1 LTR MaLR 149 364 -1 561 211 143 68 chr13 98147475 98147560 -21597338 - MER5A DNA MER1_type -68 121 17 368 185 0 12 chr13 98147623 98147704 -21597194 + MER53 DNA DNA 104 183 -6 1132 198 94 55 chr13 98148131 98148459 -21596439 - MLT1A2 LTR MaLR -28 346 6 2161 120 147 5 chr13 98149880 98150255 -21594643 - MSTA LTR MaLR 0 428 1 2734 153 48 6 chr13 98151155 98151678 -21593220 - L1MB3 LINE L1 -2 6181 5637 26 50 0 0 chr13 98151826 98151866 -21593032 + AT_rich Low_complexity Low_complexity 1 40 0 270 28 0 0 chr13 98151909 98151945 -21592953 - L1MB3 LINE L1 -549 5634 5599 2009 85 4 4 chr13 98151945 98152205 -21592693 - AluSp SINE Alu 0 313 54 345 96 19 0 chr13 98152207 98152259 -21592639 - AluS SINE Alu -206 97 45 345 96 19 0 chr13 98152253 98152305 -21592593 - AluS SINE Alu -206 97 45 * 347 45 0 0 chr13 98152299 98152343 -21592555 - AluS SINE Alu -206 97 54 763 72 0 0 chr13 98152345 98152442 -21592456 - AluS SINE Alu -216 97 1 780 186 6 36 chr13 98152442 98152609 -21592289 - L1MB3 LINE L1 -575 5608 5447 1052 253 0 0 chr13 98152669 98152910 -21591988 - MER46C DNA MER2_type -11 327 87 453 281 70 18 chr13 98155359 98155587 -21589311 + LTR33 LTR ERVL 4 243 -278 606 200 28 7 chr13 98155667 98155812 -21589086 + LTR33 LTR ERVL 374 521 0 362 271 52 52 chr13 98155931 98156086 -21588812 - MER91A DNA MER1_type -40 156 2 515 294 50 30 chr13 98156375 98156576 -21588322 + MIR SINE MIR 24 228 -34 2096 103 67 20 chr13 98157338 98157696 -21587202 + THE1C LTR MaLR 1 375 0 277 350 41 0 chr13 98158569 98158666 -21586232 + MIR SINE MIR 46 146 -116 275 350 70 14 chr13 98160396 98160539 -21584359 - MIR SINE MIR -92 170 20 201 200 129 29 chr13 98160616 98160686 -21584212 - MIR SINE MIR -102 160 84 * 475 246 19 126 chr13 98160685 98160900 -21583998 - L2 LINE L2 0 3313 3122 324 200 27 0 chr13 98161068 98161143 -21583755 - Cheshire DNA MER1_type 0 2420 2344 * 532 226 124 11 chr13 98161123 98161300 -21583598 - Cheshire DNA MER1_type -2132 288 92 966 184 6 0 chr13 98161300 98161458 -21583440 + AluJo SINE Alu 121 279 -33 269 82 20 0 chr13 98161458 98161507 -21583391 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2363 106 13 21 chr13 98162130 98162508 -21582390 - THE1C LTR MaLR 0 375 1 419 333 146 20 chr13 98168368 98168725 -21576173 - L2 LINE L2 0 3313 2912 2131 64 0 18 chr13 98169026 98169306 -21575592 - AluSg SINE Alu -35 275 1 309 252 138 0 chr13 98169308 98169431 -21575467 - MIR SINE MIR -73 189 50 2183 105 0 42 chr13 98170246 98170559 -21574339 + AluSg SINE Alu 1 300 -10 3148 110 89 4 chr13 98170576 98171059 -21573839 - MER1A DNA MER1_type -5 524 1 185 284 0 30 chr13 98171203 98171270 -21573628 - MIR SINE MIR -76 186 122 466 226 24 8 chr13 98172224 98172348 -21572550 - MER94 DNA DNA -8 126 1 648 211 0 69 chr13 98173677 98173852 -21571046 - MIR SINE MIR -34 228 66 724 259 61 68 chr13 98176700 98177245 -21567653 + MER34 LTR ERV1 1 541 -1 2274 192 58 36 chr13 98177452 98178004 -21566894 - MER82 DNA MER2_type -89 564 1 4524 206 54 10 chr13 98178467 98179463 -21565435 - MER45B DNA AcHobo 0 1040 1 1912 193 90 80 chr13 98180329 98180438 -21564460 + MLT1E LTR MaLR 1 107 -486 1829 174 47 14 chr13 98180438 98180801 -21564097 - THE1C LTR MaLR 0 375 1 1912 193 90 80 chr13 98180801 98181278 -21563620 + MLT1E LTR MaLR 107 593 0 1261 126 0 67 chr13 98181561 98181592 -21563306 - Tigger4(Zombi) DNA MER2_type -1 2730 2698 1885 178 0 6 chr13 98181592 98181906 -21562992 + AluJo SINE Alu 1 312 0 1261 126 0 67 chr13 98181906 98182128 -21562770 - Tigger4(Zombi) DNA MER2_type -33 2698 2494 * 1641 161 7 4 chr13 98182113 98182392 -21562506 - Tigger4(Zombi) DNA MER2_type -2451 280 1 324 206 59 0 chr13 98182590 98182658 -21562240 + AluJo SINE Alu 87 158 -144 2228 87 0 0 chr13 98182695 98182982 -21561916 + AluY SINE Alu 25 311 0 391 281 5 113 chr13 98183683 98183886 -21561012 - MIR3 SINE MIR -25 183 3 21 57 0 0 chr13 98184073 98184108 -21560790 + AT_rich Low_complexity Low_complexity 1 35 0 347 75 28 65 chr13 98184119 98184226 -21560672 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 1597 272 128 19 chr13 98184233 98185139 -21559759 - L2 LINE L2 -19 3294 2282 441 232 34 116 chr13 98185169 98185376 -21559522 + L2 LINE L2 3117 3306 -7 295 289 6 13 chr13 98185463 98185619 -21559279 - L1P LINE L1 -1087 5059 4905 2170 140 0 0 chr13 98186427 98186727 -21558171 + AluSx SINE Alu 1 300 -12 858 251 100 57 chr13 98187745 98188236 -21556662 - Tigger8 DNA MER2_type -99 567 56 4274 151 18 49 chr13 98189108 98189265 -21555633 + L1PB4 LINE L1 5328 5488 -668 948 65 0 0 chr13 98189265 98189389 -21555509 + (TA)n Simple_repeat Simple_repeat 2 125 0 1706 141 0 11 chr13 98189391 98189654 -21555244 - AluSx SINE Alu -30 282 23 4274 151 18 49 chr13 98189654 98189980 -21554918 + L1PB4 LINE L1 5489 5772 -384 2411 67 0 48 chr13 98189980 98190296 -21554602 + AluY SINE Alu 1 301 -10 4274 151 18 49 chr13 98190296 98190670 -21554228 + L1PB4 LINE L1 5772 6156 0 1708 169 17 61 chr13 98190712 98191056 -21553842 + MLT1B LTR MaLR 24 352 -38 431 251 25 115 chr13 98191058 98191301 -21553597 - MIR SINE MIR -34 228 8 25 0 0 0 chr13 98191577 98191602 -21553296 + AT_rich Low_complexity Low_complexity 1 25 0 1028 160 19 38 chr13 98191891 98191950 -21552948 + L1MB4 LINE L1 5971 6030 -150 3126 102 11 23 chr13 98191950 98192389 -21552509 + MER57B LTR ERV1 1 434 0 1028 160 19 38 chr13 98192389 98192542 -21552356 + L1MB4 LINE L1 6030 6179 -1 1941 144 0 0 chr13 98194036 98194320 -21550578 + AluSx SINE Alu 5 288 -24 27 0 0 0 chr13 98194320 98194347 -21550551 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr13 98194996 98195025 -21549873 + AT_rich Low_complexity Low_complexity 1 29 0 307 191 15 132 chr13 98198914 98199050 -21545848 - MIR3 SINE MIR -6 202 83 2341 115 0 0 chr13 98200198 98200510 -21544388 - AluSx SINE Alu 0 312 1 22 35 0 0 chr13 98200537 98200566 -21544332 + AT_rich Low_complexity Low_complexity 1 29 0 4500 146 39 8 chr13 98200877 98201603 -21543295 - L1MB3 LINE L1 -7 6176 5429 1222 152 13 27 chr13 98201826 98202050 -21542848 - AluJb SINE Alu -5 307 87 229 204 0 0 chr13 98202064 98202108 -21542790 - MER96B DNA MER1_type? -183 234 191 873 184 0 22 chr13 98202372 98202551 -21542347 - MER96B DNA MER1_type? -242 175 1 1402 167 40 0 chr13 98203624 98203851 -21541047 + MER46A DNA MER2_type 1 236 0 218 268 21 134 chr13 98204159 98204301 -21540597 + L2 LINE L2 3143 3268 -4 186 279 155 43 chr13 98204336 98204497 -21540401 + L2 LINE L2 3123 3301 -12 873 258 83 51 chr13 98204664 98205206 -21539692 + MLT1G LTR MaLR 11 555 0 796 246 16 5 chr13 98206055 98206096 -21538802 - MIR SINE MIR -67 195 156 2501 166 36 49 chr13 98206096 98206567 -21538331 - MLT1C LTR MaLR -2 465 1 796 246 16 5 chr13 98206567 98206716 -21538182 - MIR SINE MIR -106 156 3 2118 134 23 52 chr13 98206730 98207073 -21537825 - MER1B DNA MER1_type -4 333 1 1771 169 11 0 chr13 98207495 98207800 -21537098 + AluJo SINE Alu 1 308 0 2219 123 0 3 chr13 98208150 98208460 -21536438 + AluSx SINE Alu 1 309 -3 2008 164 33 22 chr13 98209473 98209832 -21535066 + MLT1A1 LTR MaLR 3 365 0 310 298 44 88 chr13 98210956 98211115 -21533783 + MIR SINE MIR 3 153 -55 247 318 0 0 chr13 98211205 98211271 -21533627 - L2 LINE L2 -3 3310 3245 896 208 99 141 chr13 98211485 98211569 -21533329 + L1MC4a LINE L1 5326 5412 -2396 2334 102 0 0 chr13 98211569 98211862 -21533036 - AluSq SINE Alu -20 293 1 896 208 99 141 chr13 98211862 98212394 -21532504 + L1MC4a LINE L1 5412 5916 -1892 987 167 0 19 chr13 98212661 98212823 -21532075 - MER2 DNA MER2_type -185 160 2 26 64 0 0 chr13 98212926 98212973 -21531925 + AT_rich Low_complexity Low_complexity 1 47 0 2500 115 58 9 chr13 98213101 98213448 -21531450 + THE1B LTR MaLR 1 364 0 1642 146 51 22 chr13 98214635 98214909 -21529989 + AluJo SINE Alu 1 282 -30 279 0 0 0 chr13 98214911 98214942 -21529956 + (GA)n Simple_repeat Simple_repeat 2 32 0 1136 235 14 0 chr13 98215001 98215218 -21529680 + MER58A DNA MER1_type 5 224 0 2176 136 0 0 chr13 98216377 98216686 -21528212 + AluSx SINE Alu 1 309 -3 1622 218 66 33 chr13 98216722 98217084 -21527814 + MLT1A2 LTR MaLR 1 374 0 2308 204 51 28 chr13 98217392 98217956 -21526942 + MER90 LTR ERV1 37 613 -1 2094 138 0 6 chr13 98218051 98218363 -21526535 + AluSg SINE Alu 1 310 0 1959 144 7 13 chr13 98218409 98218707 -21526191 - AluJb SINE Alu -15 297 2 1259 136 54 25 chr13 98218934 98219176 -21525722 - MER90 LTR ERV1 -326 249 1 186 305 61 12 chr13 98220021 98220103 -21524795 + L2 LINE L2 3209 3294 -19 940 168 0 0 chr13 98220164 98220313 -21524585 + FRAM SINE Alu 22 170 -6 612 311 51 0 chr13 98220694 98220871 -21524027 + MER5A DNA MER1_type 2 187 -2 925 172 12 12 chr13 98220873 98221036 -21523862 - AluJo SINE Alu -149 163 1 1958 141 26 20 chr13 98221755 98222061 -21522837 + AluSx SINE Alu 1 308 -4 1585 139 37 18 chr13 98222651 98222815 -21522083 - AluJo SINE Alu -1 311 139 2137 89 36 46 chr13 98222815 98223119 -21521779 - AluSx SINE Alu -11 301 1 1585 139 37 18 chr13 98223119 98223227 -21521671 - AluJo SINE Alu -173 139 34 2348 100 0 7 chr13 98223887 98224197 -21520701 + AluSc SINE Alu 1 308 -1 234 368 11 0 chr13 98224731 98224818 -21520080 + L2 LINE L2 3225 3312 -1 576 103 0 0 chr13 98224833 98224911 -21519987 + MADE1 DNA Mariner 1 78 -2 1783 191 58 89 chr13 98225447 98225498 -21519400 + L1MA9 LINE L1 5754 5805 -507 504 0 0 0 chr13 98225498 98225554 -21519344 + (TA)n Simple_repeat Simple_repeat 1 56 0 1783 191 58 89 chr13 98225554 98226040 -21518858 + L1MA9 LINE L1 5805 6274 -38 21 0 0 0 chr13 98226040 98226061 -21518837 + AT_rich Low_complexity Low_complexity 1 21 0 1991 154 90 6 chr13 98228821 98229177 -21515721 + MLT1B LTR MaLR 5 390 0 2311 110 0 0 chr13 98229322 98229630 -21515268 + AluSx SINE Alu 1 308 -4 219 69 0 0 chr13 98229635 98229664 -21515234 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 207 246 18 0 chr13 98230162 98230219 -21514679 + L2 LINE L2 2920 2977 -336 251 267 0 17 chr13 98231029 98231089 -21513809 - L2 LINE L2 -4 3309 3251 673 185 96 34 chr13 98231371 98231549 -21513349 + L1MC1 LINE L1 6145 6333 0 25 0 0 0 chr13 98231568 98231593 -21513305 + AT_rich Low_complexity Low_complexity 1 25 0 640 130 102 0 chr13 98231819 98231927 -21512971 + L1MC1 LINE L1 6215 6333 0 513 47 0 0 chr13 98232035 98232099 -21512799 + (TA)n Simple_repeat Simple_repeat 2 65 0 2322 96 6 10 chr13 98232099 98232411 -21512487 - AluSx SINE Alu -1 311 1 2470 143 6 3 chr13 98232660 98233025 -21511873 + MER47A DNA MER2_type 1 366 0 202 292 15 15 chr13 98233995 98234060 -21510838 - MIR SINE MIR -82 180 116 2800 170 36 29 chr13 98234839 98235387 -21509511 + L1MA10 LINE L1 5773 6324 -10 243 0 0 0 chr13 98235710 98235737 -21509161 + (T)n Simple_repeat Simple_repeat 1 27 0 1965 111 50 13 chr13 98235995 98236293 -21508605 - AluSq SINE Alu -4 309 1 2088 113 3 3 chr13 98236619 98236926 -21507972 - AluSx SINE Alu 0 307 1 1377 147 4 35 chr13 98236967 98237199 -21507699 + L1PA16 LINE L1 5942 6166 0 1671 99 22 0 chr13 98237793 98238015 -21506883 + AluSg/x SINE Alu 65 291 -21 290 308 0 17 chr13 98238804 98238921 -21505977 + CT-rich Low_complexity Low_complexity 3 117 0 382 282 24 40 chr13 98240201 98240325 -21504573 + MER5B DNA MER1_type 57 178 0 1531 221 99 38 chr13 98240387 98240863 -21504035 - MLT1D LTR MaLR 0 505 1 233 210 97 0 chr13 98240938 98241000 -21503898 - L2 LINE L2 0 3313 3246 759 292 125 6 chr13 98241092 98241428 -21503470 + L2 LINE L2 2116 2491 -823 406 190 83 74 chr13 98241475 98241596 -21503302 + MER5C DNA MER1_type 3 124 -200 568 254 252 35 chr13 98241792 98242209 -21502689 + L2 LINE L2 2791 3309 -4 1981 145 0 7 chr13 98242520 98242824 -21502074 + AluJb SINE Alu 1 302 -10 24 67 0 0 chr13 98242839 98242884 -21502014 + AT_rich Low_complexity Low_complexity 1 45 0 203 285 43 97 chr13 98242974 98243034 -21501864 - L3 LINE CR1 -351 1226 1164 2140 117 3 7 chr13 98243034 98243333 -21501565 - AluSx SINE Alu -14 298 1 203 285 43 97 chr13 98243333 98243458 -21501440 - L3 LINE CR1 -413 1164 1051 435 277 44 7 chr13 98243536 98243673 -21501225 - MLT1I LTR MaLR -15 394 253 1739 210 12 59 chr13 98244013 98244422 -21500476 - MLT1B LTR MaLR 0 390 1 258 320 24 32 chr13 98244498 98244623 -21500275 - L3 LINE CR1 -854 723 600 251 254 0 0 chr13 98245068 98245123 -21499775 + L2 LINE L2 3217 3271 -1 187 234 182 13 chr13 98245280 98245357 -21499541 + L3b LINE CR1 1178 1267 -316 255 211 273 33 chr13 98245494 98245674 -21499224 - MIR SINE MIR -13 249 21 1783 159 4 4 chr13 98247963 98248239 -21496659 + AluJb SINE Alu 2 277 -35 844 162 12 0 chr13 98248253 98248420 -21496478 + (CA)n Simple_repeat Simple_repeat 2 170 0 527 310 33 11 chr13 98248900 98249084 -21495814 + MIR SINE MIR 72 259 -3 237 65 0 0 chr13 98249291 98249322 -21495576 + (CA)n Simple_repeat Simple_repeat 2 32 0 2272 129 0 0 chr13 98249752 98250061 -21494837 + AluSx SINE Alu 1 309 -3 1854 203 95 12 chr13 98250680 98251080 -21493818 - MLT1C LTR MaLR -34 433 1 258 288 64 40 chr13 98251400 98251525 -21493373 - MIR3 SINE MIR 0 208 81 327 289 35 0 chr13 98252203 98252345 -21492553 - L1ME4a LINE L1 -1 6120 5974 415 172 71 49 chr13 98252813 98252963 -21491935 + L1ME1 LINE L1 5864 5981 -185 525 216 0 0 chr13 98253001 98253117 -21491781 + L1MA10 LINE L1 6210 6325 -9 1858 164 52 0 chr13 98253126 98253558 -21491340 + L1MC2 LINE L1 5836 6343 -1 248 250 56 56 chr13 98253565 98253673 -21491225 + Charlie8 DNA MER1_type 81 188 -2229 694 267 71 59 chr13 98254198 98254630 -21490268 - L1ME4a LINE L1 -32 6089 5615 1883 169 0 0 chr13 98254630 98254926 -21489972 - AluJb SINE Alu -16 296 1 694 267 71 59 chr13 98254926 98255011 -21489887 - L1ME4a LINE L1 -506 5615 5532 23 54 0 0 chr13 98255188 98255225 -21489673 + AT_rich Low_complexity Low_complexity 1 37 0 2083 137 10 0 chr13 98255724 98256023 -21488875 - AluSx SINE Alu -10 302 1 2007 178 37 3 chr13 98256546 98256900 -21487998 + MLT2D LTR ERVL 1 366 -48 2802 120 38 2 chr13 98256912 98257336 -21487562 - Tigger2 DNA MER2_type 0 2718 2280 437 159 0 14 chr13 98257334 98257403 -21487495 - Tigger2 DNA MER2_type -2649 69 2 * 819 194 15 51 chr13 98257869 98258192 -21486706 + MLT1A1 LTR MaLR 1 363 -11 265 231 0 0 chr13 98258214 98258266 -21486632 + LTR30 LTR ERV1 1 52 -670 1364 77 16 157 chr13 98258266 98258553 -21486345 + LTR12 LTR ERV1 57 2005 -433 358 200 59 23 chr13 98258553 98258676 -21486222 + LTR30 LTR ERV1 544 647 -75 1318 101 167 0 chr13 98258676 98258874 -21486024 + LTR12 LTR ERV1 484 714 0 203 167 0 0 chr13 98258979 98259015 -21485883 + (TG)n Simple_repeat Simple_repeat 2 37 0 3636 132 37 12 chr13 98259399 98259722 -21485176 - L1MA9 LINE L1 -6 6306 5960 2265 119 90 3 chr13 98259722 98260057 -21484841 - THE1B LTR MaLR 0 364 1 3636 132 37 12 chr13 98260057 98260330 -21484568 - L1MA9 LINE L1 -352 5960 5695 2050 60 0 12 chr13 98260547 98260836 -21484062 + AluY SINE Alu 34 319 0 242 304 0 59 chr13 98260850 98260952 -21483946 + MIR SINE MIR 104 199 -63 374 305 0 25 chr13 98261025 98261143 -21483755 - L2 LINE L2 0 3313 3199 328 82 33 0 chr13 98261146 98261207 -21483691 + (GA)n Simple_repeat Simple_repeat 2 64 0 261 314 138 27 chr13 98261925 98262332 -21482566 + L2 LINE L2 1726 2177 -1137 337 287 20 0 chr13 98262523 98262624 -21482274 + MLT1C LTR MaLR 6 108 -359 1833 142 14 10 chr13 98262624 98262912 -21481986 + AluJb SINE Alu 1 289 -23 389 212 0 10 chr13 98262912 98263011 -21481887 + G-rich Low_complexity Low_complexity 3 100 0 1255 198 88 32 chr13 98263023 98263362 -21481536 + MLT1C LTR MaLR 110 467 0 2334 98 0 16 chr13 98263880 98264198 -21480700 - AluSq SINE Alu 0 313 1 186 398 131 6 chr13 98264412 98264588 -21480310 + L2 LINE L2 3070 3267 -5 295 227 10 93 chr13 98264761 98264858 -21480040 + MIR3 SINE MIR 106 194 -14 1594 226 105 27 chr13 98265198 98265644 -21479254 + MLT1E LTR MaLR 113 593 0 3594 190 83 67 chr13 98265762 98266876 -21478022 + L1MC4a LINE L1 6678 7808 0 2388 84 0 0 chr13 98267033 98267329 -21477569 - AluY SINE Alu -15 296 1 257 260 80 10 chr13 98267704 98267804 -21477094 - MIR SINE MIR -1 261 155 222 349 0 0 chr13 98267987 98268050 -21476848 + polypurine Low_complexity Low_complexity 2 64 0 875 281 50 48 chr13 98268064 98268481 -21476417 + L3 LINE CR1 1153 1570 -7 230 185 19 19 chr13 98268865 98268919 -21475979 + MLT1I LTR MaLR 1 54 -355 228 234 52 26 chr13 98268974 98269051 -21475847 + MLT1J2 LTR MaLR 96 174 -276 * 682 216 65 13 chr13 98269035 98269188 -21475710 + MLT1I LTR MaLR 249 409 0 627 266 17 28 chr13 98269190 98269367 -21475531 + MIR SINE MIR 87 261 -1 346 255 184 46 chr13 98269484 98269723 -21475175 + L2 LINE L2 1883 2154 -1160 * 539 265 6 48 chr13 98269719 98269885 -21475013 - MER5B DNA MER1_type -19 159 1 1522 201 48 0 chr13 98269893 98270202 -21474696 + MER33 DNA MER1_type 1 324 0 260 287 61 17 chr13 98270209 98270324 -21474574 + L2 LINE L2 2172 2291 -1023 421 253 107 87 chr13 98270529 98270892 -21474006 + L2 LINE L2 2626 3002 -311 2268 114 0 0 chr13 98270892 98271189 -21473709 - AluSx SINE Alu -15 297 1 421 253 107 87 chr13 98271189 98271255 -21473643 + L2 LINE L2 3002 3065 -248 417 20 0 0 chr13 98271355 98271405 -21473493 + (TG)n Simple_repeat Simple_repeat 2 51 0 865 186 0 0 chr13 98271416 98271556 -21473342 - FRAM SINE Alu -35 141 2 250 337 61 10 chr13 98271575 98271673 -21473225 + L2 LINE L2 3137 3239 -33 288 253 95 11 chr13 98271707 98271802 -21473096 - MIR SINE MIR 0 262 160 240 111 0 0 chr13 98272251 98272287 -21472611 + (CA)n Simple_repeat Simple_repeat 2 37 0 207 296 44 29 chr13 98272420 98272547 -21472351 - L2 LINE L2 -217 3055 2926 2306 111 3 3 chr13 98273235 98273541 -21471357 + AluSq SINE Alu 2 307 -6 1983 161 5 40 chr13 98274416 98274788 -21470110 + MLT1A1 LTR MaLR 7 365 0 268 382 21 54 chr13 98274796 98275037 -21469861 - L2 LINE L2 -652 2662 2430 2963 121 39 2 chr13 98276035 98276448 -21468450 + MSTC LTR MaLR 1 428 0 273 321 41 71 chr13 98276792 98277060 -21467838 + L2 LINE L2 653 912 -2402 852 219 67 119 chr13 98277060 98277490 -21467408 + MLT1D LTR MaLR 1 408 -97 707 153 0 0 chr13 98277491 98277589 -21467309 + AluJ/FLAM SINE Alu 2 99 -213 694 80 9 18 chr13 98277599 98277711 -21467187 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 327 356 7 30 chr13 98277712 98277847 -21467051 + L2 LINE L2 1127 1258 -2056 1038 341 54 51 chr13 98277851 98278869 -21466029 + L2 LINE L2 2258 3282 -31 511 299 71 5 chr13 98279086 98279270 -21465628 + MER91A DNA MER1_type 1 196 0 779 251 82 9 chr13 98280609 98280840 -21464058 + MIR SINE MIR 15 262 0 2273 102 13 0 chr13 98280918 98281223 -21463675 + AluSx SINE Alu 1 309 -3 1987 185 44 20 chr13 98281264 98281639 -21463259 - L1MB8 LINE L1 -1 6177 5790 3569 62 30 18 chr13 98281639 98282078 -21462820 + MLT2A1 LTR ERVL 1 444 0 1987 185 44 20 chr13 98282078 98282108 -21462790 - L1MB8 LINE L1 -388 5790 5762 337 290 43 59 chr13 98282251 98282433 -21462465 - MIR3 SINE MIR -64 144 4 2203 160 40 60 chr13 98282702 98283153 -21461745 + LTR47A LTR ERVL 11 452 0 2335 159 58 52 chr13 98284246 98284634 -21460264 + MLT1C LTR MaLR 1 394 -73 2066 141 0 3 chr13 98284634 98284931 -21459967 - AluSq SINE Alu -17 296 1 2335 159 58 52 chr13 98284931 98285006 -21459892 + MLT1C LTR MaLR 394 467 0 954 146 6 38 chr13 98285234 98285392 -21459506 + AluJo SINE Alu 1 153 -159 341 290 50 0 chr13 98285721 98285821 -21459077 - L2 LINE L2 0 3272 3168 1459 163 29 8 chr13 98285926 98286172 -21458726 + AluJo SINE Alu 44 294 -18 33556 86 8 7 chr13 98286183 98292328 -21452570 + L1PA6 LINE L1 11 6154 0 2007 144 17 0 chr13 98293034 98293332 -21451566 + AluSx SINE Alu 3 305 -7 39 22 0 0 chr13 98293666 98293712 -21451186 + AT_rich Low_complexity Low_complexity 1 46 0 863 180 0 0 chr13 98294443 98294571 -21450327 - FLAM_A SINE Alu -5 128 1 2421 167 28 26 chr13 98295912 98296190 -21448708 + MSTB LTR MaLR 1 282 -144 2238 110 0 3 chr13 98296190 98296491 -21448407 + AluSx SINE Alu 1 300 -12 2421 167 28 26 chr13 98296491 98296637 -21448261 + MSTB LTR MaLR 282 426 0 220 158 0 0 chr13 98297475 98297513 -21447385 - L2 LINE L2 -2 3311 3274 714 307 22 9 chr13 98297736 98297967 -21446931 - MIR SINE MIR -15 247 14 6364 124 23 19 chr13 98299959 98300751 -21444147 + L1MA4 LINE L1 5265 6052 -248 2296 122 0 0 chr13 98300751 98301055 -21443843 + AluSq SINE Alu 1 304 -9 6364 124 23 19 chr13 98301055 98301109 -21443789 + L1MA4 LINE L1 6052 6104 -196 452 87 145 0 chr13 98301109 98301178 -21443720 + MADE1 DNA Mariner 2 80 0 6364 124 23 19 chr13 98301178 98301356 -21443542 + L1MA4 LINE L1 6104 6295 -5 1973 129 0 43 chr13 98301729 98302031 -21442867 - AluSx SINE Alu -23 289 1 192 325 0 12 chr13 98303031 98303111 -21441787 - L3b LINE CR1 -194 1389 1311 2279 114 0 0 chr13 98303282 98303580 -21441318 + AluSx SINE Alu 1 298 -14 348 298 10 0 chr13 98303744 98303848 -21441050 + MIR SINE MIR 158 262 0 2498 184 90 12 chr13 98304780 98305291 -21439607 + MER89 LTR ERV1 5 555 -4 2343 178 72 26 chr13 98305442 98306028 -21438870 + MER67B LTR ERV1 1 658 -3 4147 144 24 21 chr13 98306093 98306653 -21438245 + MER50 LTR ERV1 1 565 -169 2209 113 0 0 chr13 98306653 98306946 -21437952 - AluSx SINE Alu -19 293 1 4147 144 24 21 chr13 98306946 98307094 -21437804 + MER50 LTR ERV1 565 711 -23 1850 119 98 0 chr13 98307237 98307514 -21437384 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr13 98307514 98307534 -21437364 + (TA)n Simple_repeat Simple_repeat 2 21 0 255 200 50 0 chr13 98307750 98307810 -21437088 + MIR SINE MIR 129 191 -71 287 322 124 0 chr13 98307951 98308128 -21436770 - L3 LINE CR1 -86 1491 1293 592 197 114 0 chr13 98308402 98308534 -21436364 - MER5A DNA MER1_type -42 147 1 711 0 0 0 chr13 98309179 98309252 -21435646 - tRNA-Phe-TTC tRNA tRNA -3 73 1 195 211 0 0 chr13 98309890 98309928 -21434970 - L2 LINE L2 -10 3303 3266 548 40 0 13 chr13 98310064 98310140 -21434758 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 303 79 0 0 chr13 98310282 98310320 -21434578 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 2327 104 0 7 chr13 98311211 98311520 -21433378 + AluSx SINE Alu 1 307 -5 1829 158 90 117 chr13 98311732 98312277 -21432621 + MER119 DNA MER1_type 40 569 -14 614 133 108 42 chr13 98312679 98312799 -21432099 - FLAM_A SINE Alu -2 131 4 273 119 0 0 chr13 98312870 98312912 -21431986 + (CA)n Simple_repeat Simple_repeat 1 42 0 3184 229 77 61 chr13 98312949 98314053 -21430845 + L1MC4 LINE L1 6906 8027 -15 1578 171 10 48 chr13 98314055 98314197 -21430701 + AluJb SINE Alu 1 147 -165 2107 107 17 10 chr13 98314197 98314495 -21430403 + AluSq SINE Alu 1 300 -13 1578 171 10 48 chr13 98314495 98314661 -21430237 + AluJb SINE Alu 147 297 -15 30 0 0 0 chr13 98314675 98314705 -21430193 + AT_rich Low_complexity Low_complexity 1 30 0 210 277 107 62 chr13 98314740 98314852 -21430046 - MIR3 SINE MIR -6 202 86 1637 197 49 39 chr13 98314853 98315238 -21429660 - MLT1B LTR MaLR -1 389 1 237 245 131 93 chr13 98316485 98316722 -21428176 + LTR48B LTR ERV1 386 631 -13 2434 89 0 0 chr13 98316826 98317128 -21427770 - AluSq SINE Alu -11 302 1 303 267 52 0 chr13 98317881 98317990 -21426908 - MIR SINE MIR -75 133 19 4328 104 60 0 chr13 98318191 98318789 -21426109 + MER51A LTR ERV1 1 634 0 476 283 98 56 chr13 98318941 98319586 -21425312 + L1MC4 LINE L1 7268 8042 0 199 286 26 13 chr13 98320766 98320843 -21424055 - MIR SINE MIR -72 190 113 12165 112 68 20 chr13 98320886 98322206 -21422692 - Tigger1 DNA MER2_type 0 2418 1162 2287 99 10 3 chr13 98322206 98322509 -21422389 - AluSq SINE Alu -8 305 1 12165 112 68 20 chr13 98322509 98322810 -21422088 - Tigger1 DNA MER2_type -1256 1162 877 1798 124 65 31 chr13 98322810 98323100 -21421798 + AluSx SINE Alu 1 300 -12 12165 112 68 20 chr13 98323100 98323387 -21421511 - Tigger1 DNA MER2_type -1541 877 418 1096 143 12 0 chr13 98323387 98323555 -21421343 - AluSg/x SINE Alu -9 303 134 2388 87 0 3 chr13 98323555 98323854 -21421044 - AluSq SINE Alu -15 298 1 2444 164 29 2 chr13 98323854 98324270 -21420628 - Tigger1 DNA MER2_type -1991 427 1 226 246 8 8 chr13 98324750 98324834 -21420064 + GA-rich Low_complexity Low_complexity 1 84 0 2240 93 10 7 chr13 98325980 98326281 -21418617 - AluSq SINE Alu -11 302 1 238 0 0 0 chr13 98326330 98326358 -21418540 - HY3 scRNA scRNA -1 100 73 2313 96 0 10 chr13 98326360 98326661 -21418237 - AluSp SINE Alu -15 298 1 275 336 149 52 chr13 98326805 98327287 -21417611 + L2 LINE L2 2181 2709 -605 575 254 118 9 chr13 98327287 98327507 -21417391 + L1ME4a LINE L1 5801 6044 -77 311 315 49 7 chr13 98327576 98327719 -21417179 + L2 LINE L2 2708 2856 -458 582 189 117 0 chr13 98327761 98327872 -21417026 - MER5A DNA MER1_type -59 130 7 3499 166 94 10 chr13 98327876 98328585 -21416313 - L1MB4 LINE L1 -4 6176 5408 328 325 118 6 chr13 98328634 98328803 -21416095 + L2 LINE L2 2892 3079 -193 1557 112 147 12 chr13 98328890 98329148 -21415750 + AluSc SINE Alu 1 293 -16 295 228 0 0 chr13 98329154 98329211 -21415687 + HAL1 LINE L1 341 397 -2110 492 292 111 44 chr13 98329347 98329662 -21415236 + LTR16B LTR ERVL 129 464 0 765 307 51 23 chr13 98329669 98330021 -21414877 + HERV16 LTR ERVL 8 369 -4627 251 338 12 0 chr13 98330092 98330172 -21414726 - HERV16 LTR ERVL -4403 593 513 625 157 20 10 chr13 98330324 98330426 -21414472 + FLAM_C SINE Alu 30 132 -11 308 266 55 31 chr13 98330434 98330562 -21414336 + HERV16 LTR ERVL 2287 2417 -2579 2059 145 71 38 chr13 98330591 98330983 -21413915 - MSTA LTR MaLR -21 407 3 2331 330 77 27 chr13 98330989 98331883 -21413015 + HERV16 LTR ERVL 2447 3295 -2190 2064 168 62 16 chr13 98331883 98332253 -21412645 + MLT1B LTR MaLR 1 387 -3 2331 330 77 27 chr13 98332253 98333222 -21411676 + HERV16 LTR ERVL 3295 4404 -1081 28 29 0 0 chr13 98333573 98333608 -21411290 + AT_rich Low_complexity Low_complexity 1 35 0 219 146 0 0 chr13 98334390 98334431 -21410467 + (A)n Simple_repeat Simple_repeat 1 41 0 1910 159 10 10 chr13 98334815 98335117 -21409781 - AluJo SINE Alu -9 303 2 454 237 83 18 chr13 98335442 98335611 -21409287 - MER104 DNA MER2_type 0 180 1 246 325 44 79 chr13 98336244 98336350 -21408548 - MIR SINE MIR -3 259 162 2285 95 0 3 chr13 98336350 98336646 -21408252 + AluSc SINE Alu 1 295 -14 246 325 44 79 chr13 98336646 98336742 -21408156 - MIR SINE MIR -100 162 64 204 250 0 67 chr13 98339214 98339274 -21405624 - MIR SINE MIR -124 84 29 737 121 61 38 chr13 98340390 98340522 -21404376 + AluSq/x SINE Alu 2 136 -177 27 0 0 0 chr13 98340720 98340747 -21404151 + AT_rich Low_complexity Low_complexity 1 27 0 224 286 71 0 chr13 98340836 98340906 -21403992 - MIR SINE MIR -29 233 159 * 666 206 296 0 chr13 98340903 98341160 -21403738 - L2 LINE L2 -352 2962 2630 276 264 90 42 chr13 98341160 98341304 -21403594 + HAL1 LINE L1 2351 2501 -6 2225 101 7 3 chr13 98341447 98341743 -21403155 + AluSp SINE Alu 1 297 -16 3283 78 18 5 chr13 98342067 98342505 -21402393 + MLT2A1 LTR ERVL 1 444 0 35 54 0 0 chr13 98343020 98343076 -21401822 + AT_rich Low_complexity Low_complexity 1 56 0 1064 261 63 6 chr13 98343359 98343708 -21401190 + L1MC5 LINE L1 5255 5623 -2185 937 139 17 40 chr13 98343709 98343882 -21401016 + MLT1B LTR MaLR 2 170 -220 1546 230 39 73 chr13 98343895 98344592 -21400306 + L1MC5 LINE L1 6431 7107 -854 1919 116 46 7 chr13 98344592 98344877 -21400021 - AluSx SINE Alu -16 296 1 1546 230 39 73 chr13 98344877 98344957 -21399941 + L1MC5 LINE L1 7107 7188 -773 2097 132 0 7 chr13 98345045 98345348 -21399550 + AluSx SINE Alu 1 301 -11 636 268 24 16 chr13 98345747 98345993 -21398905 + L1M4 LINE L1 2190 2437 -3709 438 287 64 5 chr13 98345994 98346196 -21398702 + L1M4 LINE L1 2607 2820 -3326 183 80 0 0 chr13 98346628 98346653 -21398245 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr13 98347835 98347857 -21397041 + AT_rich Low_complexity Low_complexity 1 22 0 576 121 0 0 chr13 98348118 98348201 -21396697 + AluSx SINE Alu 11 93 -220 1959 92 8 4 chr13 98348202 98348464 -21396434 + AluSq SINE Alu 1 263 -50 26 0 0 0 chr13 98348576 98348602 -21396296 + AT_rich Low_complexity Low_complexity 1 26 0 1408 81 0 127 chr13 98348604 98348840 -21396058 + AluSx SINE Alu 86 291 -21 1527 186 14 7 chr13 98348840 98349115 -21395783 - AluJo SINE Alu -35 277 1 22 56 0 0 chr13 98349218 98349254 -21395644 + AT_rich Low_complexity Low_complexity 1 36 0 253 227 61 0 chr13 98350097 98350163 -21394735 - MIR SINE MIR -10 252 183 2173 110 0 14 chr13 98350251 98350543 -21394355 + AluSx SINE Alu 1 288 -24 395 332 35 22 chr13 98351258 98351490 -21393408 + L2 LINE L2 2350 2584 -730 263 287 167 20 chr13 98352013 98352163 -21392735 - L2 LINE L2 -19 3294 3123 337 300 11 0 chr13 98352563 98352653 -21392245 + MIR3 SINE MIR 111 201 -7 497 275 68 44 chr13 98354325 98354576 -21390322 - L1MC4 LINE L1 -15 8027 7771 261 57 0 0 chr13 98355021 98355056 -21389842 - HSMAR1 DNA Mariner -1252 35 1 233 183 39 144 chr13 98355158 98355262 -21389636 - MER20 DNA MER1_type -125 94 2 560 277 114 0 chr13 98355302 98355486 -21389412 - MIR SINE MIR -6 256 52 582 155 10 0 chr13 98355908 98356011 -21388887 + L1MB4 LINE L1 6073 6176 -4 297 202 64 0 chr13 98356947 98357041 -21387857 + L1ME LINE L1 5677 5776 -345 186 43 0 0 chr13 98357190 98357213 -21387685 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 909 121 8 0 chr13 98357973 98358105 -21386793 - FLAM_C SINE Alu 0 133 1 208 253 0 127 chr13 98358409 98358449 -21386449 + L3 LINE CR1 1508 1535 -42 2141 106 33 7 chr13 98358449 98358750 -21386148 - AluSx SINE Alu -3 309 1 208 253 0 127 chr13 98358750 98358788 -21386110 + L3 LINE CR1 1535 1576 -1 223 274 137 55 chr13 98359590 98359736 -21385162 - MER5B DNA MER1_type -1 177 20 534 273 208 0 chr13 98360481 98360697 -21384201 - MLT1L LTR MaLR -7 608 348 25 31 0 0 chr13 98361813 98361845 -21383053 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr13 98363002 98363025 -21381873 + (T)n Simple_repeat Simple_repeat 1 23 0 722 229 49 27 chr13 98363130 98363313 -21381585 - MER5A DNA MER1_type -2 187 1 1688 180 0 16 chr13 98364297 98364603 -21380295 - AluJo SINE Alu -11 301 1 366 316 74 22 chr13 98364607 98364801 -21380097 - MIR SINE MIR -41 221 19 22 35 0 0 chr13 98365447 98365476 -21379422 + AT_rich Low_complexity Low_complexity 1 29 0 29 70 0 0 chr13 98366954 98367011 -21377887 + AT_rich Low_complexity Low_complexity 1 57 0 1800 77 0 5 chr13 98367310 98367531 -21377367 - AluSq SINE Alu -92 221 2 331 225 75 67 chr13 98368040 98368061 -21376837 - MIR SINE MIR -8 254 235 1622 181 20 13 chr13 98368061 98368359 -21376539 + AluJo SINE Alu 1 300 -12 331 225 75 67 chr13 98368359 98368457 -21376441 - MIR SINE MIR -27 235 134 2127 79 52 0 chr13 98369208 98369499 -21375399 - AluY SINE Alu -5 306 1 1828 125 77 0 chr13 98369499 98369771 -21375127 - AluSp SINE Alu -20 293 1 371 259 209 7 chr13 98369884 98370023 -21374875 - L1MC4a LINE L1 -1766 6042 5876 23 54 0 0 chr13 98370059 98370096 -21374802 + AT_rich Low_complexity Low_complexity 1 37 0 333 301 153 27 chr13 98370162 98370345 -21374553 - L1MC4a LINE L1 -1737 6071 5866 27 0 0 0 chr13 98370861 98370888 -21374010 + AT_rich Low_complexity Low_complexity 1 27 0 28 91 0 0 chr13 98370930 98371007 -21373891 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr13 98373076 98373098 -21371800 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 98373144 98373175 -21371723 + AT_rich Low_complexity Low_complexity 1 31 0 446 172 0 6 chr13 98375030 98375120 -21369778 + L1MC4 LINE L1 7716 8036 -6 427 293 117 46 chr13 98375122 98375451 -21369447 + L2 LINE L2 2699 3042 -271 1510 248 25 69 chr13 98375461 98375982 -21368916 + MLT2F LTR ERVL 1 498 -165 483 222 82 22 chr13 98376177 98376312 -21368586 + L2 LINE L2 3170 3312 -1 389 240 172 16 chr13 98377041 98377233 -21367665 - L1MC4a LINE L1 -1884 5924 5703 1470 268 49 55 chr13 98377313 98377962 -21366936 + MER21B LTR ERV1 62 706 -157 411 281 100 15 chr13 98378085 98378596 -21366302 - L1MC4a LINE L1 -803 5343 4906 423 268 66 66 chr13 98378672 98378915 -21365983 - L1MC4a LINE L1 -1371 4775 4533 290 303 46 10 chr13 98379165 98379360 -21365538 - L1MC4a LINE L1 -1769 4377 4176 815 175 78 68 chr13 98379403 98379712 -21365186 + L1M4 LINE L1 3100 3411 -2735 340 148 82 0 chr13 98379719 98379780 -21365118 - LTR40a LTR ERVL 0 519 454 * 894 288 94 16 chr13 98379776 98380095 -21364803 - LTR40c LTR ERVL -121 344 1 697 234 30 5 chr13 98380098 98380295 -21364603 + L1M4 LINE L1 3417 3618 -2528 373 182 0 91 chr13 98380295 98380405 -21364493 + L1M4 LINE L1 4861 4960 -1186 428 88 29 15 chr13 98380419 98380487 -21364411 - THE1B LTR MaLR 0 364 296 240 35 0 0 chr13 98380488 98380517 -21364381 + (TG)n Simple_repeat Simple_repeat 1 29 0 1767 150 0 21 chr13 98380629 98380909 -21363989 - AluJb SINE Alu -37 275 2 603 253 45 7 chr13 98380924 98381193 -21363705 + L1MC/D LINE L1 2936 3214 -2932 739 238 128 74 chr13 98381225 98381561 -21363337 + L1MC/D LINE L1 4698 5014 -1156 2590 46 0 7 chr13 98381561 98381864 -21363034 + AluY SINE Alu 1 301 -10 739 238 128 74 chr13 98381864 98381969 -21362929 + L1MC/D LINE L1 5014 5112 -1058 2332 80 6 55 chr13 98381969 98382296 -21362602 + AluSx SINE Alu 1 311 -1 739 238 128 74 chr13 98382296 98382529 -21362369 + L1MC/D LINE L1 5112 5437 -733 1148 224 96 67 chr13 98382745 98383161 -21361737 + L1ME3A LINE L1 4900 5302 -868 2412 70 7 0 chr13 98383161 98383459 -21361439 - AluY SINE Alu -11 300 1 1148 224 96 67 chr13 98383459 98383973 -21360925 + L1ME3A LINE L1 5302 5858 -312 238 108 68 0 chr13 98384013 98384087 -21360811 + (TA)n Simple_repeat Simple_repeat 2 80 0 1915 129 3 24 chr13 98385149 98385444 -21359454 + AluSx SINE Alu 1 289 -23 2191 109 3 0 chr13 98385639 98385932 -21358966 + AluSc SINE Alu 1 294 -15 630 110 9 9 chr13 98386152 98386261 -21358637 + L1MA4 LINE L1 6188 6296 -4 822 278 196 33 chr13 98387660 98388383 -21356515 - L2 LINE L2 0 3313 2464 2388 59 3 0 chr13 98389493 98389781 -21355117 + AluSq SINE Alu 1 289 -24 765 275 221 8 chr13 98389851 98390244 -21354654 + L2 LINE L2 2837 3313 0 248 227 45 0 chr13 98390330 98390396 -21354502 + L1MC/D LINE L1 5556 5624 -497 278 222 0 0 chr13 98390427 98390481 -21354417 + L1MC/D LINE L1 5693 5746 -2062 2124 110 14 0 chr13 98391107 98391397 -21353501 - AluSx SINE Alu -18 294 1 2908 9 0 0 chr13 98391471 98391788 -21353110 - AluYb8 SINE Alu -1 317 1 3038 139 97 74 chr13 98392016 98392176 -21352722 - MER51A LTR ERV1 0 634 479 2184 104 21 0 chr13 98392176 98392464 -21352434 + AluSx SINE Alu 1 294 -18 3038 139 97 74 chr13 98392464 98392923 -21351975 - MER51A LTR ERV1 -155 479 1 2283 88 3 0 chr13 98392951 98393236 -21351662 + AluSp SINE Alu 11 296 -17 1613 102 0 0 chr13 98393770 98393976 -21350922 - AluSc SINE Alu -103 206 1 1739 165 24 0 chr13 98393979 98394276 -21350622 - THE1A LTR MaLR -51 304 1 3572 203 60 15 chr13 98394276 98395395 -21349503 + L1ME1 LINE L1 4970 6141 -25 8784 39 4 0 chr13 98395400 98397180 -21347718 - L1PA5 LINE L1 -5 6149 4364 321 309 0 0 chr13 98397199 98397309 -21347589 - L1M4 LINE L1 -2211 3935 3826 2269 111 0 0 chr13 98397370 98397668 -21347230 + AluSx SINE Alu 1 298 -14 2352 98 7 0 chr13 98397777 98398084 -21346814 - AluSx SINE Alu -2 310 2 287 278 0 14 chr13 98398209 98398281 -21346617 + MIR SINE MIR 5 75 -187 225 0 0 0 chr13 98398779 98398804 -21346094 + (T)n Simple_repeat Simple_repeat 1 25 0 260 204 51 102 chr13 98400592 98400650 -21344248 - L1 LINE L1 -1116 5030 4971 506 293 46 23 chr13 98400650 98400824 -21344074 + MER5B DNA MER1_type 1 178 0 260 204 51 102 chr13 98400824 98400902 -21343996 - L1 LINE L1 -1175 4971 4901 * 473 162 193 58 chr13 98400892 98401151 -21343747 + L1ME4a LINE L1 5825 6118 -3 2087 115 3 11 chr13 98401190 98401500 -21343398 - AluSq SINE Alu 0 308 1 22 0 0 0 chr13 98401500 98401522 -21343376 + AT_rich Low_complexity Low_complexity 1 22 0 303 336 20 40 chr13 98401664 98401683 -21343215 - MIR3 SINE MIR -3 205 187 2334 109 0 0 chr13 98401683 98401985 -21342913 + AluSg SINE Alu 1 302 -8 303 336 20 40 chr13 98401985 98402114 -21342784 - MIR3 SINE MIR -21 187 60 1061 179 83 23 chr13 98402114 98402332 -21342566 + L1ME2 LINE L1 5933 6163 -1 789 151 8 0 chr13 98402743 98402862 -21342036 + FLAM_C SINE Alu 2 121 -22 486 225 2 2 chr13 98403068 98403180 -21341718 - L1ME3 LINE L1 -2 6332 6062 844 138 14 14 chr13 98403187 98403325 -21341573 + FRAM SINE Alu 2 139 -37 182 316 45 45 chr13 98403339 98403472 -21341426 + L3b LINE CR1 1249 1381 -202 705 304 71 40 chr13 98403754 98404007 -21340891 + L2 LINE L2 3006 3266 -6 1362 171 18 58 chr13 98404065 98404340 -21340558 + AluJo SINE Alu 32 295 -17 376 309 57 87 chr13 98405258 98405718 -21339180 - L2 LINE L2 -1 3271 2826 1872 168 0 0 chr13 98405783 98406074 -21338824 - AluSx SINE Alu -21 291 1 662 214 0 15 chr13 98406076 98406207 -21338691 - AluJ SINE Alu -1 311 183 515 170 0 64 chr13 98406217 98406311 -21338587 - AluJ SINE Alu -188 124 37 1574 196 134 58 chr13 98406319 98406788 -21338110 - MLT1E1 LTR MaLR -149 505 1 2397 87 3 0 chr13 98408908 98409206 -21335692 - AluSx SINE Alu -13 299 1 575 122 52 87 chr13 98409227 98409342 -21335556 - 5S rRNA rRNA -2 119 9 287 178 0 27 chr13 98409597 98409670 -21335228 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 198 321 57 0 chr13 98409806 98409859 -21335039 + MIR SINE MIR 61 116 -146 27 0 0 0 chr13 98410301 98410328 -21334570 + AT_rich Low_complexity Low_complexity 1 27 0 2357 205 88 134 chr13 98410501 98411629 -21333269 + L1MC5 LINE L1 6499 7677 -284 2288 102 3 0 chr13 98411629 98411934 -21332964 + AluSx SINE Alu 3 308 -4 2357 205 88 134 chr13 98411934 98412019 -21332879 + L1MC5 LINE L1 7677 7764 -197 1866 166 0 0 chr13 98412019 98412320 -21332578 - AluSx SINE Alu -11 301 1 2357 205 88 134 chr13 98412320 98412614 -21332284 + L1MC5 LINE L1 7764 7927 -34 334 213 103 10 chr13 98412855 98412974 -21331924 - L1ME2 LINE L1 -276 5888 5786 10505 117 18 50 chr13 98412981 98413332 -21331566 + Tigger4(Zombi) DNA MER2_type 1 362 -2369 2333 104 3 0 chr13 98413332 98413639 -21331259 - AluSp SINE Alu -5 308 1 10505 117 18 50 chr13 98413639 98414197 -21330701 + Tigger4(Zombi) DNA MER2_type 362 936 -1795 1454 212 0 18 chr13 98414197 98414475 -21330423 + AluJo SINE Alu 1 273 -39 10505 117 18 50 chr13 98414475 98415266 -21329632 + Tigger4(Zombi) DNA MER2_type 936 1647 -1084 509 299 81 0 chr13 98415271 98415445 -21329453 - L1ME2 LINE L1 -469 5701 5514 779 263 98 42 chr13 98415904 98416189 -21328709 + MLT1K LTR MaLR 227 527 -61 201 94 0 0 chr13 98416229 98416261 -21328637 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1779 161 0 18 chr13 98416265 98416551 -21328347 - AluSx SINE Alu -31 281 1 207 0 0 0 chr13 98416944 98416967 -21327931 + (GA)n Simple_repeat Simple_repeat 2 24 0 638 216 144 20 chr13 98417052 98417205 -21327693 - MER69A DNA AcHobo -2 175 4 241 342 8 8 chr13 98420547 98420664 -21324234 + CT-rich Low_complexity Low_complexity 3 119 0 198 0 0 0 chr13 98424762 98424784 -21320114 + (CA)n Simple_repeat Simple_repeat 1 22 0 234 279 125 66 chr13 98425431 98425490 -21319408 - MIR3 SINE MIR -27 181 127 2030 145 0 7 chr13 98425490 98425800 -21319098 + AluJo SINE Alu 5 312 0 234 279 125 66 chr13 98425800 98425876 -21319022 - MIR3 SINE MIR -81 127 38 21 0 0 0 chr13 98426169 98426190 -21318708 + AT_rich Low_complexity Low_complexity 1 21 0 1967 160 48 68 chr13 98426223 98426238 -21318660 + MLT1C LTR MaLR 3 17 -450 2074 148 50 3 chr13 98426238 98426577 -21318321 + THE1A LTR MaLR 1 355 0 1967 160 48 68 chr13 98426577 98427035 -21317863 + MLT1C LTR MaLR 17 467 0 1741 178 24 53 chr13 98427538 98427614 -21317284 - MLT1A1 LTR MaLR 0 365 288 2173 118 0 3 chr13 98427614 98427911 -21316987 + AluSx SINE Alu 3 298 -14 1741 178 24 53 chr13 98427911 98428210 -21316688 - MLT1A1 LTR MaLR -77 288 1 301 56 0 0 chr13 98428666 98428702 -21316196 - MER53 DNA DNA 0 189 154 457 173 10 10 chr13 98428716 98428820 -21316078 + CT-rich Low_complexity Low_complexity 1 104 0 1952 127 43 3 chr13 98428820 98429119 -21315779 - AluSx SINE Alu -1 311 1 261 159 143 0 chr13 98429130 98429193 -21315705 + MER53 DNA DNA 73 144 -45 247 286 63 40 chr13 98429209 98429335 -21315563 + L2 LINE L2 2984 3112 -201 1554 184 40 7 chr13 98429930 98430208 -21314690 + AluJo SINE Alu 1 287 -25 2585 49 0 3 chr13 98430955 98431259 -21313639 - AluY SINE Alu -8 303 1 243 0 0 0 chr13 98432195 98432222 -21312676 + (TG)n Simple_repeat Simple_repeat 1 27 0 346 38 19 19 chr13 98432222 98432275 -21312623 + (GA)n Simple_repeat Simple_repeat 2 54 0 25 0 0 0 chr13 98432762 98432787 -21312111 + AT_rich Low_complexity Low_complexity 1 25 0 216 366 0 0 chr13 98433575 98433646 -21311252 - L2 LINE L2 -15 3257 3187 207 214 0 0 chr13 98434312 98434354 -21310544 + A-rich Low_complexity Low_complexity 1 42 0 234 373 157 11 chr13 98435546 98436082 -21308816 - L2 LINE L2 -456 2858 2245 28 0 0 0 chr13 98436746 98436774 -21308124 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr13 98437941 98437981 -21306917 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 54 0 0 chr13 98438054 98438091 -21306807 + AT_rich Low_complexity Low_complexity 1 37 0 2162 136 0 3 chr13 98438157 98438465 -21306433 + AluSx SINE Alu 4 310 -2 2033 134 3 0 chr13 98439124 98439142 -21305756 - AluSx SINE Alu -13 299 283 240 35 0 0 chr13 98439142 98439171 -21305727 + (TG)n Simple_repeat Simple_repeat 1 29 0 2033 134 3 0 chr13 98439171 98439450 -21305448 - AluSx SINE Alu -29 283 1 613 231 23 0 chr13 98440144 98440274 -21304624 + MIR SINE MIR 11 143 -119 285 98 0 0 chr13 98440276 98440317 -21304581 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 1740 266 170 22 chr13 98440321 98441554 -21303344 - L2 LINE L2 -43 3270 1850 259 219 94 16 chr13 98441561 98441625 -21303273 - MER69 DNA AcHobo -4 2522 2454 201 111 0 127 chr13 98441643 98441706 -21303192 + (TAAAAA)n Simple_repeat Simple_repeat 6 60 0 1350 160 62 141 chr13 98441760 98441868 -21303030 - MER69 DNA AcHobo -68 2458 2343 2022 142 0 3 chr13 98441868 98442164 -21302734 + AluSx SINE Alu 1 295 -17 1350 160 62 141 chr13 98442164 98442230 -21302668 - MER69 DNA AcHobo -183 2343 2273 1712 178 10 13 chr13 98442230 98442533 -21302365 + AluJo SINE Alu 11 312 0 1350 160 62 141 chr13 98442533 98442975 -21301923 - MER69 DNA AcHobo -253 2273 1890 1320 221 107 77 chr13 98442948 98443100 -21301798 - MER69 DNA AcHobo -1696 830 684 * 214 65 0 0 chr13 98443100 98443131 -21301767 + (TTTA)n Simple_repeat Simple_repeat 2 96 0 1685 161 52 0 chr13 98443131 98443398 -21301500 - AluJo SINE Alu -27 285 5 1320 221 107 77 chr13 98443398 98443964 -21300934 - MER69 DNA AcHobo -1841 685 34 274 164 49 0 chr13 98444064 98444125 -21300773 - L2 LINE L2 -1545 1769 1706 382 313 31 12 chr13 98444301 98444461 -21300437 - L2 LINE L2 -1653 1661 1499 1398 138 22 9 chr13 98444636 98444861 -21300037 + MLT2C1 LTR ERVL 1 228 -169 281 239 0 22 chr13 98444900 98444992 -21299906 + L1MC4 LINE L1 6614 6703 -1339 312 137 0 0 chr13 98444999 98445050 -21299848 + (TA)n Simple_repeat Simple_repeat 1 51 0 210 118 0 0 chr13 98445051 98445085 -21299813 + (GGGAGA)n Simple_repeat Simple_repeat 1 34 0 2061 127 0 0 chr13 98445085 98445368 -21299530 - AluSq SINE Alu -30 283 1 816 136 109 118 chr13 98445581 98445802 -21299096 - MER20 DNA MER1_type 0 219 1 1845 142 3 24 chr13 98446314 98446610 -21298288 + AluJo SINE Alu 14 303 -9 3980 123 35 70 chr13 98446708 98447502 -21297396 + L1MB7 LINE L1 5419 6184 0 1238 171 0 23 chr13 98447733 98447950 -21296948 + AluJo SINE Alu 87 298 -14 2049 152 0 22 chr13 98448004 98448320 -21296578 + AluSx SINE Alu 1 309 -3 426 150 12 0 chr13 98448326 98448406 -21296492 - L2 LINE L2 -12 3301 3221 183 80 0 0 chr13 98448406 98448431 -21296467 + (A)n Simple_repeat Simple_repeat 1 25 0 562 324 143 4 chr13 98448470 98448729 -21296169 + L3 LINE CR1 1083 1377 -200 519 325 21 13 chr13 98448742 98448979 -21295919 - MIR SINE MIR -15 247 9 234 204 0 0 chr13 98449264 98449308 -21295590 - L2 LINE L2 -10 3262 3219 984 299 51 12 chr13 98449462 98449492 -21295406 - L2 LINE L2 0 3313 3286 2309 113 0 0 chr13 98449492 98449792 -21295106 + AluSx SINE Alu 2 301 -11 984 299 51 12 chr13 98449792 98450176 -21294722 - L2 LINE L2 -27 3286 2883 1062 201 130 34 chr13 98450367 98450862 -21294036 + MLT1E2 LTR MaLR 5 626 0 1485 217 2 60 chr13 98450862 98451238 -21293660 - L2 LINE L2 -734 2580 2229 2232 105 3 0 chr13 98451238 98451524 -21293374 - AluSx SINE Alu -20 292 6 1485 217 2 60 chr13 98451524 98451562 -21293336 - L2 LINE L2 -1085 2229 2190 660 183 163 7 chr13 98451565 98451718 -21293180 + MLT1E2 LTR MaLR 1 177 -477 1633 221 6 26 chr13 98451721 98452069 -21292829 - MLT1A2 LTR MaLR 0 374 34 1898 195 32 63 chr13 98452123 98452603 -21292295 + MLT1E2 LTR MaLR 140 626 0 845 253 8 28 chr13 98452603 98452852 -21292046 - L2 LINE L2 -1128 2186 1943 234 339 128 0 chr13 98452858 98452967 -21291931 - MIR SINE MIR -67 141 19 25 0 0 0 chr13 98452999 98453024 -21291874 + AT_rich Low_complexity Low_complexity 1 25 0 2110 136 42 33 chr13 98453075 98453436 -21291462 + THE1B LTR MaLR 1 364 0 354 329 6 37 chr13 98453534 98453698 -21291200 - MER5B DNA MER1_type 0 178 20 553 276 101 22 chr13 98453980 98454360 -21290538 + MLT1J2 LTR MaLR 7 450 0 635 155 0 10 chr13 98454942 98455045 -21289853 + FLAM_A SINE Alu 22 123 -19 638 147 17 26 chr13 98455424 98455540 -21289358 - AluJo SINE Alu -80 232 118 189 0 0 0 chr13 98455540 98455561 -21289337 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 917 268 24 24 chr13 98455598 98455852 -21289046 + MLT1I LTR MaLR 4 257 -152 316 208 91 0 chr13 98455871 98455948 -21288950 + MLT1J2 LTR MaLR 365 448 -2 860 148 0 0 chr13 98456097 98456225 -21288673 - AluJo SINE Alu -172 130 3 1418 220 97 99 chr13 98456256 98456636 -21288262 - L2 LINE L2 -1199 2115 1736 1523 179 13 39 chr13 98456636 98456944 -21287954 - AluJo SINE Alu -12 300 1 1418 220 97 99 chr13 98456944 98457035 -21287863 - L2 LINE L2 -1578 1736 1646 1929 164 0 0 chr13 98457035 98457333 -21287565 - 7SLRNA srpRNA srpRNA -3 317 20 1418 220 97 99 chr13 98457333 98457404 -21287494 - L2 LINE L2 -1668 1646 1576 1061 269 99 28 chr13 98457404 98457910 -21286988 - MLT1F LTR MaLR 0 542 1 1418 220 97 99 chr13 98457910 98458065 -21286833 - L2 LINE L2 -1738 1576 1417 247 241 143 36 chr13 98460939 98461051 -21283847 + MER69A DNA AcHobo 42 165 -12 357 24 0 0 chr13 98463899 98463941 -21280957 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 227 240 0 0 chr13 98463944 98463994 -21280904 - L2 LINE L2 -13 3300 3251 209 235 0 25 chr13 98465720 98465801 -21279097 + GA-rich Low_complexity Low_complexity 2 80 0 244 213 0 0 chr13 98465806 98465853 -21279045 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr13 98467608 98467637 -21277261 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 98467921 98467942 -21276956 + AT_rich Low_complexity Low_complexity 1 21 0 317 128 23 23 chr13 98469328 98469414 -21275484 + (CGG)n Simple_repeat Simple_repeat 3 88 0 24 53 0 0 chr13 98469452 98469490 -21275408 + GC_rich Low_complexity Low_complexity 1 38 0 204 97 0 0 chr13 98470390 98470421 -21274477 + (GGA)n Simple_repeat Simple_repeat 1 31 0 324 0 0 0 chr13 98472382 98472418 -21272480 + (CA)n Simple_repeat Simple_repeat 1 36 0 464 296 23 30 chr13 98475404 98475583 -21269315 - MIR SINE MIR -56 206 33 182 37 37 0 chr13 98476320 98476347 -21268551 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3774 30 0 0 chr13 98476349 98476780 -21268118 - L1PA5 LINE L1 -15 6139 5709 624 267 38 44 chr13 98476834 98477118 -21267780 - L1ME3 LINE L1 -230 5940 5663 524 249 91 12 chr13 98477117 98477282 -21267616 - L1ME LINE L1 -5861 209 32 * 1130 225 77 143 chr13 98477300 98477665 -21267233 - L1ME3 LINE L1 -1146 5000 4612 1519 213 14 0 chr13 98477665 98477947 -21266951 - AluJb SINE Alu -26 286 1 1130 225 77 143 chr13 98477947 98477969 -21266929 - L1ME3 LINE L1 -1534 4612 4590 1934 102 11 15 chr13 98477969 98478257 -21266641 - AluSg1 SINE Alu 0 303 17 1130 225 77 143 chr13 98478257 98478392 -21266506 - L1ME3 LINE L1 -1556 4590 4448 2274 97 14 0 chr13 98478392 98478681 -21266217 + AluSg SINE Alu 5 297 -13 1130 225 77 143 chr13 98478681 98478806 -21266092 - L1ME3 LINE L1 -1698 4448 4316 1909 159 0 0 chr13 98478806 98479107 -21265791 - AluSx SINE Alu -6 306 6 1130 225 77 143 chr13 98479107 98479236 -21265662 - L1ME3 LINE L1 -1830 4316 4298 1973 141 0 22 chr13 98479236 98479555 -21265343 - AluJb SINE Alu 0 312 1 1130 225 77 143 chr13 98479555 98479770 -21265128 - L1ME3 LINE L1 -1848 4298 4070 2100 131 0 13 chr13 98481018 98481323 -21263575 - AluJb SINE Alu 0 312 12 433 323 52 0 chr13 98481449 98481604 -21263294 + L2 LINE L2 3110 3272 0 2236 136 0 0 chr13 98481962 98482272 -21262626 + AluSq SINE Alu 3 312 -1 2390 68 0 0 chr13 98482286 98482597 -21262301 - AluSc SINE Alu 0 311 1 1172 202 79 108 chr13 98482986 98483192 -21261706 + MLT1B LTR MaLR 1 193 -197 345 100 0 0 chr13 98483192 98483242 -21261656 + (TG)n Simple_repeat Simple_repeat 2 51 0 1172 202 79 108 chr13 98483242 98483416 -21261482 + MLT1B LTR MaLR 193 370 -20 1902 270 53 6 chr13 98484020 98484550 -21260348 + MLT1H1 LTR MaLR 1 555 0 229 331 145 0 chr13 98485739 98485884 -21259014 + MIR SINE MIR 1 166 -96 2433 82 0 3 chr13 98485950 98486253 -21258645 - AluY SINE Alu -9 302 1 374 221 0 8 chr13 98486492 98486586 -21258312 - L1M3 LINE L1 -518 5665 5575 10443 55 7 0 chr13 98486609 98488657 -21256241 + L1PA6 LINE L1 4085 6140 -14 302 284 0 12 chr13 98488684 98488765 -21256133 - L1M3 LINE L1 -596 5588 5509 1950 164 12 181 chr13 98488772 98489491 -21255407 - MLT2B3 LTR ERVL 0 520 1 514 206 0 9 chr13 98489491 98489598 -21255300 - L1M3 LINE L1 -678 5506 5401 6344 34 0 0 chr13 98489598 98490334 -21254564 - L1PA5 LINE L1 -1 6153 5418 5235 42 2 0 chr13 98490334 98490965 -21253933 + L1P LINE L1 3298 3929 -2217 601 146 77 0 chr13 98490981 98491111 -21253787 - L1M3 LINE L1 -767 5411 5272 593 218 40 11 chr13 98491108 98491282 -21253616 - L1M3 LINE L1 -1409 4737 4559 * 989 176 19 192 chr13 98491325 98491631 -21253267 + MLT2D LTR ERVL 69 292 -105 472 65 26 0 chr13 98491631 98491708 -21253190 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 989 176 19 192 chr13 98491708 98491793 -21253105 + MLT2D LTR ERVL 292 390 -7 391 291 32 0 chr13 98491795 98491953 -21252945 - L1M3 LINE L1 -2655 3491 3329 3848 217 39 25 chr13 98492135 98493242 -21251656 - L1M3 LINE L1 -2876 3270 2149 581 207 0 0 chr13 98493330 98493446 -21251452 - FRAM SINE Alu -1 175 60 378 289 56 35 chr13 98493452 98493826 -21251072 - L1M4c LINE L1 -4138 3000 2619 1780 257 65 40 chr13 98494021 98494978 -21249920 - L1M4c LINE L1 -4436 2702 1574 2223 75 7 0 chr13 98494978 98495283 -21249615 + AluY SINE Alu 1 307 0 1780 257 65 40 chr13 98495283 98495551 -21249347 - L1M4c LINE L1 -5564 1574 1314 1831 232 44 73 chr13 98495552 98495958 -21248940 - L1M4c LINE L1 -6279 580 164 976 126 11 11 chr13 98495958 98496132 -21248766 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 1478 189 0 34 chr13 98496133 98496398 -21248500 - AluJo SINE Alu -39 273 18 1831 232 44 73 chr13 98496398 98496537 -21248361 - L1M4c LINE L1 -6694 165 49 217 228 304 0 chr13 98497255 98497334 -21247564 - L2 LINE L2 -1 3271 3169 257 316 84 40 chr13 98497459 98497498 -21247400 - L2 LINE L2 -219 3053 3017 1321 178 7 135 chr13 98497498 98497913 -21246985 - MLT1A1 LTR MaLR -2 363 2 257 316 84 40 chr13 98497913 98498236 -21246662 - L2 LINE L2 -255 3017 2673 2120 82 39 11 chr13 98498492 98498774 -21246124 - AluSg SINE Alu -20 290 1 501 267 126 6 chr13 98499202 98499479 -21245419 - LTR33A LTR ERVL -2 521 296 273 57 0 0 chr13 98499570 98499605 -21245293 + (GGAGAA)n Simple_repeat Simple_repeat 5 39 0 180 0 0 0 chr13 98499625 98499645 -21245253 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1301 172 0 10 chr13 98499647 98499851 -21245047 - AluJb SINE Alu -20 292 91 2265 118 3 6 chr13 98499867 98500180 -21244718 - AluSx SINE Alu 0 312 1 1388 183 6 37 chr13 98500209 98500541 -21244357 - MLT1A1 LTR MaLR 0 374 2 926 186 15 25 chr13 98500542 98500741 -21244157 - MLT1A1 LTR MaLR -137 228 32 355 239 56 42 chr13 98500794 98500936 -21243962 - LTR50 LTR ERVL -648 147 4 1203 124 14 0 chr13 98501070 98501280 -21243618 - L1MA7 LINE L1 -1 6290 6078 1828 232 82 2 chr13 98501550 98502016 -21242882 + MLT1D LTR MaLR 1 503 -2 255 231 66 66 chr13 98502075 98502166 -21242732 - MIR SINE MIR -75 187 97 200 269 39 0 chr13 98502705 98502757 -21242141 - L2 LINE L2 -3 3269 3216 599 194 0 0 chr13 98503353 98503451 -21241447 + FRAM SINE Alu 46 143 -33 804 116 48 0 chr13 98503459 98503606 -21241292 - L1MA7 LINE L1 -60 6231 6078 184 152 25 38 chr13 98503682 98503761 -21241137 + (TA)n Simple_repeat Simple_repeat 1 78 0 300 181 21 75 chr13 98503776 98503870 -21241028 - L1MC4 LINE L1 -1339 6703 6615 225 132 0 0 chr13 98503870 98503908 -21240990 + (CA)n Simple_repeat Simple_repeat 1 38 0 2281 117 0 0 chr13 98503932 98504239 -21240659 - AluSx SINE Alu -5 307 1 248 221 29 29 chr13 98505236 98505249 -21239649 + GA-rich Low_complexity Low_complexity 3 15 -55 2219 122 6 3 chr13 98505249 98505561 -21239337 + AluSq SINE Alu 1 313 0 248 221 29 29 chr13 98505561 98505615 -21239283 + GA-rich Low_complexity Low_complexity 14 70 0 28 48 0 0 chr13 98506168 98506210 -21238688 + AT_rich Low_complexity Low_complexity 1 42 0 215 73 98 0 chr13 98506845 98506886 -21238012 + A-rich Low_complexity Low_complexity 1 45 0 328 333 144 17 chr13 98507263 98507443 -21237455 + L2 LINE L2 3065 3267 -5 728 178 0 13 chr13 98507486 98507638 -21237260 + CT-rich Low_complexity Low_complexity 2 151 0 1772 169 13 16 chr13 98507659 98507972 -21236926 - AluJb SINE Alu 0 312 1 21 0 0 0 chr13 98508177 98508198 -21236700 + AT_rich Low_complexity Low_complexity 1 21 0 967 166 25 0 chr13 98509648 98509805 -21235093 + FRAM SINE Alu 1 161 -5 23 0 0 0 chr13 98509971 98509994 -21234904 + AT_rich Low_complexity Low_complexity 1 23 0 1474 173 14 0 chr13 98510876 98511159 -21233739 - L1MB7 LINE L1 -23 6161 5875 2408 85 10 0 chr13 98511475 98511780 -21233118 - AluSx SINE Alu -4 308 1 266 222 185 22 chr13 98512406 98512541 -21232357 - L1MB7 LINE L1 -260 5861 5705 37 69 0 0 chr13 98512586 98512658 -21232240 + AT_rich Low_complexity Low_complexity 1 72 0 380 231 75 40 chr13 98512658 98512857 -21232041 - L1MB7 LINE L1 -464 5657 5452 846 300 105 17 chr13 98512865 98513378 -21231520 - L1MB7 LINE L1 -707 5414 4858 5152 159 41 0 chr13 98513659 98515062 -21229836 - L1PA16 LINE L1 0 6166 4643 238 346 10 0 chr13 98516770 98516874 -21228024 + CT-rich Low_complexity Low_complexity 2 106 0 2568 201 0 67 chr13 98517196 98517896 -21227002 - L1MB7 LINE L1 -1490 4656 4004 21 57 0 0 chr13 98518122 98518157 -21226741 + AT_rich Low_complexity Low_complexity 1 35 0 222 247 0 74 chr13 98518242 98518323 -21226575 + CT-rich Low_complexity Low_complexity 6 80 0 267 275 0 14 chr13 98518944 98519047 -21225851 + CT-rich Low_complexity Low_complexity 1 101 0 235 160 67 118 chr13 98519615 98519695 -21225203 + L1MB2 LINE L1 6058 6132 -39 1921 147 3 31 chr13 98519695 98520015 -21224883 - AluJb SINE Alu -1 311 1 235 160 67 118 chr13 98520015 98520053 -21224845 + L1MB2 LINE L1 6132 6170 -1 216 256 183 0 chr13 98520376 98520458 -21224440 - MIR SINE MIR -1 261 165 372 282 79 45 chr13 98520701 98520903 -21223995 + MLT1J LTR MaLR 110 318 -193 578 237 119 87 chr13 98521368 98521795 -21223103 + MLT1H1 LTR MaLR 108 553 -2 35 71 0 0 chr13 98522096 98522166 -21222732 + AT_rich Low_complexity Low_complexity 1 70 0 4158 133 3 10 chr13 98522197 98522883 -21222015 + Tigger1 DNA MER2_type 1738 2418 0 503 268 50 23 chr13 98523244 98523464 -21221434 + L1ME4a LINE L1 5831 6056 -65 2635 165 9 13 chr13 98523644 98524110 -21220788 + MER66B LTR ERV1 7 470 -16 244 286 43 14 chr13 98524137 98524277 -21220621 - L1MC4a LINE L1 -1768 6040 5897 3974 135 15 12 chr13 98524278 98524319 -21220579 - Tigger1 DNA MER2_type -984 1434 1395 2533 144 29 2 chr13 98524319 98524736 -21220162 - MSTA LTR MaLR 0 428 1 3974 135 15 12 chr13 98524736 98525367 -21219531 - Tigger1 DNA MER2_type -1023 1395 760 2357 130 57 60 chr13 98525350 98525820 -21219078 - Tigger1 DNA MER2_type -1904 514 46 * 342 0 0 0 chr13 98525949 98525987 -21218911 + (TG)n Simple_repeat Simple_repeat 2 39 0 1041 235 78 19 chr13 98527733 98528269 -21216629 - MER90 LTR ERV1 -2 612 6 202 250 0 0 chr13 98528330 98528374 -21216524 - L2 LINE L2 -1 3312 3269 342 233 57 131 chr13 98528550 98528726 -21216172 - L2 LINE L2 -237 3035 2873 371 224 131 9 chr13 98529605 98529712 -21215186 + MIR SINE MIR 96 215 -47 1723 158 24 20 chr13 98531365 98531657 -21213241 + AluJo SINE Alu 1 293 -19 2319 95 0 0 chr13 98531992 98532288 -21212610 + AluSc SINE Alu 1 296 -13 678 185 50 0 chr13 98532553 98532672 -21212226 + AluJo SINE Alu 3 127 -185 995 132 66 0 chr13 98533179 98533331 -21211567 + AluJo SINE Alu 119 280 -32 197 196 20 0 chr13 98533333 98533384 -21211514 + GA-rich Low_complexity Low_complexity 1 52 0 742 153 0 15 chr13 98533449 98533580 -21211318 - FLAM_A SINE Alu 0 133 5 21 36 0 0 chr13 98534621 98534649 -21210249 + AT_rich Low_complexity Low_complexity 1 28 0 262 157 39 20 chr13 98536498 98536549 -21208349 - L2 LINE L2 0 3313 3262 2177 155 38 28 chr13 98536627 98537171 -21207727 + MLT2A2 LTR ERVL 1 554 0 192 266 62 16 chr13 98537294 98537358 -21207540 + MIR3 SINE MIR 93 159 -49 1031 158 62 0 chr13 98537372 98537549 -21207349 - MER5A DNA MER1_type -1 188 1 1770 136 20 43 chr13 98538093 98538395 -21206503 - AluSx SINE Alu -17 295 1 1871 144 14 14 chr13 98539128 98539412 -21205486 + AluJo SINE Alu 14 297 -15 244 268 134 37 chr13 98539431 98539513 -21205385 - MIR3 SINE MIR -48 160 71 25 0 0 0 chr13 98539609 98539634 -21205264 + AT_rich Low_complexity Low_complexity 1 25 0 1794 155 12 65 chr13 98539732 98539820 -21205078 - L1MB5 LINE L1 -28 6146 6055 2169 127 3 0 chr13 98539820 98540127 -21204771 - AluSq SINE Alu -5 308 1 1794 155 12 65 chr13 98540127 98540439 -21204459 - L1MB5 LINE L1 -119 6055 5767 337 253 0 55 chr13 98540626 98540717 -21204181 + MIR SINE MIR 86 171 -91 214 395 47 23 chr13 98541086 98541258 -21203640 - MIR SINE MIR -70 192 17 1001 144 123 164 chr13 98541388 98541574 -21203324 + MLT1C LTR MaLR 23 215 -252 2297 82 20 0 chr13 98541574 98541867 -21203031 - AluY SINE Alu -12 299 1 1001 144 123 164 chr13 98541867 98542144 -21202754 + MLT1C LTR MaLR 215 467 0 2305 84 0 10 chr13 98542571 98542869 -21202029 + AluY SINE Alu 1 295 -16 368 309 24 24 chr13 98543216 98543342 -21201556 + MIR3 SINE MIR 12 137 -71 3395 85 18 0 chr13 98543788 98544233 -21200665 + MLT2A2 LTR ERVL 1 453 0 46 19 0 0 chr13 98544417 98544470 -21200428 + AT_rich Low_complexity Low_complexity 1 53 0 252 182 15 30 chr13 98545181 98545247 -21199651 + (TTA)n Simple_repeat Simple_repeat 1 65 0 268 353 84 36 chr13 98546160 98546409 -21198489 - L2 LINE L2 -420 2894 2634 250 327 70 60 chr13 98546420 98546619 -21198279 - L2 LINE L2 -791 2523 2323 200 245 41 20 chr13 98546997 98547046 -21197852 + MIR SINE MIR 43 92 -116 865 259 14 14 chr13 98547154 98547374 -21197524 + MIR SINE MIR 43 262 0 2243 103 0 26 chr13 98547455 98547765 -21197133 + AluSx SINE Alu 1 302 -10 424 284 133 23 chr13 98548394 98548612 -21196286 + MLT1J2 LTR MaLR 204 445 -5 1684 124 11 45 chr13 98548663 98548929 -21195969 - AluJo SINE Alu -45 267 11 775 292 46 43 chr13 98549374 98549679 -21195219 - L2 LINE L2 0 3313 3008 764 333 41 3 chr13 98549674 98549992 -21194906 - L2 LINE L2 -436 2878 2549 * 221 372 53 9 chr13 98550158 98550271 -21194627 + L2 LINE L2 3123 3240 -32 3660 163 66 62 chr13 98550453 98551045 -21193853 + L1MB7 LINE L1 5031 5628 -556 2321 72 41 0 chr13 98551045 98551338 -21193560 + AluY SINE Alu 1 305 -6 3660 163 66 62 chr13 98551338 98551882 -21193016 + L1MB7 LINE L1 5628 6168 -16 1814 162 36 0 chr13 98552072 98552406 -21192492 + L1MB2 LINE L1 5825 6170 -1 220 244 0 0 chr13 98552428 98552473 -21192425 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 248 130 22 0 chr13 98553583 98553629 -21191269 + (TG)n Simple_repeat Simple_repeat 2 48 0 381 93 0 0 chr13 98553932 98553986 -21190912 + (TG)n Simple_repeat Simple_repeat 1 54 0 2361 95 3 0 chr13 98554161 98554465 -21190433 - AluSx SINE Alu -7 305 1 977 161 0 12 chr13 98554848 98555009 -21189889 - FRAM SINE Alu -11 165 7 204 40 0 0 chr13 98555431 98555456 -21189442 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2218 131 0 3 chr13 98555952 98556265 -21188633 - AluSx SINE Alu 0 312 1 467 270 51 0 chr13 98556454 98556591 -21188307 + MIR SINE MIR 71 214 -48 1579 90 45 9 chr13 98557317 98557539 -21187359 - MER30 DNA MER1_type 0 230 1 315 161 0 0 chr13 98558853 98558909 -21185989 + CT-rich Low_complexity Low_complexity 2 57 0 2132 133 0 0 chr13 98558912 98559213 -21185685 - AluSx SINE Alu -11 301 1 864 158 0 0 chr13 98559797 98559924 -21184974 + FLAM_C SINE Alu 1 127 -16 400 305 8 0 chr13 98560318 98560446 -21184452 - MER94 DNA DNA -1 133 5 617 269 184 0 chr13 98560453 98560665 -21184233 - MIR SINE MIR -4 258 8 405 286 61 27 chr13 98561067 98561214 -21183684 - MIR SINE MIR -108 154 3 182 36 0 36 chr13 98561243 98561271 -21183627 + (TG)n Simple_repeat Simple_repeat 2 28 0 204 65 43 22 chr13 98561271 98561311 -21183587 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 181 256 0 0 chr13 98561380 98561419 -21183479 - L2 LINE L2 0 3272 3234 853 136 0 0 chr13 98561431 98561549 -21183349 - FLAM_C SINE Alu -15 118 1 237 373 32 48 chr13 98561553 98561679 -21183219 - L2 LINE L2 -26 3246 3123 354 351 38 52 chr13 98561871 98562003 -21182895 - L2 LINE L2 -558 2756 2624 1856 156 7 30 chr13 98562003 98562304 -21182594 + AluJb SINE Alu 1 294 -18 354 351 38 52 chr13 98562304 98562538 -21182360 - L2 LINE L2 -690 2624 2395 609 322 98 4 chr13 98563329 98563565 -21181333 + MIR SINE MIR 4 261 -1 350 315 27 0 chr13 98564249 98564360 -21180538 + MIR3 SINE MIR 95 208 0 1767 166 68 80 chr13 98565237 98565748 -21179150 - MLT1D LTR MaLR 0 505 1 450 0 0 0 chr13 98565983 98566033 -21178865 + (CA)n Simple_repeat Simple_repeat 1 50 0 865 134 7 7 chr13 98566109 98566251 -21178647 + FLAM_C SINE Alu 1 142 -1 427 241 0 11 chr13 98566765 98566873 -21178025 - AluJb SINE Alu 0 303 197 21 0 0 0 chr13 98567745 98567766 -21177132 + AT_rich Low_complexity Low_complexity 1 21 0 286 331 101 14 chr13 98569673 98569821 -21175077 - MIR SINE MIR -70 192 32 2329 150 59 10 chr13 98570130 98570536 -21174362 + MSTB LTR MaLR 1 426 0 360 313 104 23 chr13 98571126 98571510 -21173388 - L1M4 LINE L1 -1247 4899 4485 21 0 0 0 chr13 98571523 98571544 -21173354 + AT_rich Low_complexity Low_complexity 1 21 0 364 401 13 7 chr13 98572615 98572767 -21172131 - MIR3 SINE MIR -54 154 2 396 303 41 33 chr13 98573372 98573494 -21171404 - L2 LINE L2 -1 3271 3149 2519 61 3 0 chr13 98573584 98573894 -21171004 + AluY SINE Alu 1 311 0 1796 146 4 4 chr13 98573929 98574209 -21170689 + AluSx SINE Alu 1 280 -32 360 0 0 0 chr13 98574209 98574249 -21170649 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 234 174 0 0 chr13 98574524 98574570 -21170328 + CT-rich Low_complexity Low_complexity 1 46 0 31 88 0 0 chr13 98574702 98574782 -21170116 + AT_rich Low_complexity Low_complexity 1 80 0 399 275 11 46 chr13 98574981 98575198 -21169700 - L1ME3A LINE L1 -213 5951 5738 627 112 26 0 chr13 98575206 98575322 -21169576 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 916 269 101 59 chr13 98575326 98576507 -21168391 - L1ME3A LINE L1 -443 5719 4491 655 301 133 30 chr13 98576619 98576753 -21168145 - L1ME3A LINE L1 -1836 4310 4191 7047 52 12 0 chr13 98576753 98577825 -21167073 - L1PA5 LINE L1 0 6154 5077 655 301 133 30 chr13 98577825 98578778 -21166120 - L1ME3A LINE L1 -1955 4191 3111 441 193 175 18 chr13 98579013 98579184 -21165714 - L1MC5 LINE L1 -63 7898 7701 1501 129 0 0 chr13 98579204 98579406 -21165492 + AluSx SINE Alu 1 202 -110 823 212 31 61 chr13 98579406 98579699 -21165199 - L1MC5 LINE L1 -665 7296 7013 419 152 13 0 chr13 98580051 98580130 -21164768 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 188 200 120 0 chr13 98580858 98580908 -21163990 + MIR SINE MIR 194 249 -13 * 200 186 0 23 chr13 98580884 98580927 -21163971 + L2 LINE L2 3271 3312 -1 652 201 168 0 chr13 98581058 98581207 -21163691 + MER5A DNA MER1_type 15 188 -1 868 171 143 0 chr13 98581624 98581834 -21163064 - MER58B DNA MER1_type -16 325 86 604 76 0 21 chr13 98581838 98582063 -21162835 + AluY SINE Alu 1 296 -15 340 243 14 0 chr13 98582063 98582137 -21162761 - MER58B DNA MER1_type -266 75 1 815 157 37 0 chr13 98582524 98582658 -21162240 - FRAM SINE Alu -10 166 28 257 227 124 10 chr13 98582748 98582845 -21162053 - L1MC5 LINE L1 -1872 5936 5829 1249 104 60 0 chr13 98582846 98583029 -21161869 - AluSq SINE Alu -1 312 119 275 213 93 0 chr13 98583049 98583124 -21161774 - L1MC5 LINE L1 -329 5792 5711 586 251 160 3 chr13 98583148 98583340 -21161558 - MIR SINE MIR -9 253 31 470 364 56 0 chr13 98584420 98584615 -21160283 - MIR SINE MIR -55 207 2 180 0 0 0 chr13 98584626 98584646 -21160252 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 434 316 48 18 chr13 98584648 98584816 -21160082 - L2 LINE L2 -15 3298 3126 197 254 17 17 chr13 98585163 98585222 -21159676 + L3 LINE CR1 1164 1222 -355 1900 147 0 4 chr13 98588925 98589204 -21155694 + AluJb SINE Alu 19 296 -16 1736 178 78 38 chr13 98590731 98590898 -21154000 + MLT1C LTR MaLR 4 163 -304 351 0 0 0 chr13 98590898 98590937 -21153961 + (CA)n Simple_repeat Simple_repeat 2 40 0 1736 178 78 38 chr13 98590937 98591191 -21153707 + MLT1C LTR MaLR 163 442 -25 1539 87 0 29 chr13 98592683 98592891 -21152007 + AluSg/x SINE Alu 102 303 -9 641 188 109 0 chr13 98593630 98593758 -21151140 + AluJb SINE Alu 158 299 -13 286 221 105 12 chr13 98594009 98594095 -21150803 - MLT1J1 LTR MaLR -348 98 5 8745 174 10 15 chr13 98594281 98597376 -21147522 + L1PB1 LINE L1 3058 6147 -4 973 199 0 0 chr13 98597499 98597670 -21147228 - AluJb SINE Alu -3 309 139 294 242 81 16 chr13 98597981 98598105 -21146793 + HAL1 LINE L1 2275 2406 -101 186 43 0 0 chr13 98599225 98599248 -21145650 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 425 269 20 96 chr13 98601019 98601216 -21143682 + L2 LINE L2 2364 2545 -769 383 284 49 37 chr13 98601219 98601341 -21143557 + MIR SINE MIR 92 218 -44 2166 129 0 7 chr13 98601341 98601650 -21143248 + AluSx SINE Alu 1 307 -5 383 284 49 37 chr13 98601650 98601689 -21143209 + MIR SINE MIR 218 255 -7 185 194 0 0 chr13 98602047 98602083 -21142815 + L2 LINE L2 2530 2565 -749 23 0 0 0 chr13 98602165 98602188 -21142710 + AT_rich Low_complexity Low_complexity 1 23 0 256 128 0 0 chr13 98602998 98603037 -21141861 - L2 LINE L2 -17 3296 3258 1995 141 10 3 chr13 98603754 98604059 -21140839 - AluJo SINE Alu -5 307 1 492 268 53 32 chr13 98604779 98604885 -21140013 + MIR SINE MIR 43 156 -106 1640 148 81 14 chr13 98604885 98605169 -21139729 + AluJb SINE Alu 1 303 -9 492 268 53 32 chr13 98605169 98605252 -21139646 + MIR SINE MIR 156 236 -26 213 152 0 22 chr13 98605254 98605300 -21139598 + (TA)n Simple_repeat Simple_repeat 2 46 0 1827 146 9 56 chr13 98605357 98605680 -21139218 - AluSx SINE Alu -3 309 2 683 118 0 0 chr13 98605781 98605866 -21139032 - AluS SINE Alu -226 86 2 1848 106 8 4 chr13 98606685 98606941 -21137957 - AluSq SINE Alu -56 257 1 180 319 133 35 chr13 98606964 98607077 -21137821 - L3b LINE CR1 -197 1386 1263 217 280 32 80 chr13 98608831 98608956 -21135942 + L2 LINE L2 3195 3313 0 3101 69 6 0 chr13 98609090 98609452 -21135446 + THE1B LTR MaLR 1 364 0 202 366 61 38 chr13 98609653 98609784 -21135114 + L2 LINE L2 3108 3241 -31 394 283 67 8 chr13 98609889 98610009 -21134889 - MIR SINE MIR -123 139 13 740 154 54 0 chr13 98610750 98610880 -21134018 - L1MC3 LINE L1 -8 7777 7641 2682 243 89 22 chr13 98611088 98612215 -21132683 + L1ME3A LINE L1 4923 6139 -31 188 83 0 28 chr13 98612772 98612808 -21132090 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 481 294 72 58 chr13 98613064 98613411 -21131487 - L1ME LINE L1 -385 5736 5385 2643 92 6 0 chr13 98614522 98614868 -21130030 - L1PA13 LINE L1 -5 6158 5811 2329 101 10 0 chr13 98616425 98616731 -21128167 - AluSq SINE Alu -4 309 1 286 322 49 21 chr13 98616909 98617052 -21127846 + MIR3 SINE MIR 39 185 -23 227 191 15 0 chr13 98618881 98618949 -21125949 + GA-rich Low_complexity Low_complexity 2 70 0 24 0 0 0 chr13 98619377 98619401 -21125497 + AT_rich Low_complexity Low_complexity 1 24 0 180 200 0 0 chr13 98622753 98622793 -21122105 + CT-rich Low_complexity Low_complexity 5 44 0 1772 163 0 3 chr13 98624443 98624777 -21120121 + AluJo SINE Alu 1 333 0 2363 89 3 0 chr13 98624984 98625288 -21119610 - AluSg SINE Alu -5 305 1 350 269 109 33 chr13 98625329 98625460 -21119438 + MIR SINE MIR 41 181 -63 360 111 28 28 chr13 98625474 98625546 -21119352 + L1M3 LINE L1 5417 5488 -683 248 229 128 18 chr13 98626770 98626879 -21118019 - L1ME4a LINE L1 -41 6080 5960 715 292 46 11 chr13 98626966 98627250 -21117648 - L1ME4a LINE L1 -296 5825 5532 237 108 0 0 chr13 98627462 98627499 -21117399 + (T)n Simple_repeat Simple_repeat 1 37 0 226 366 0 11 chr13 98627907 98628000 -21116898 + CT-rich Low_complexity Low_complexity 1 92 0 262 231 26 13 chr13 98628148 98628226 -21116672 + L1MB4 LINE L1 5410 5488 -686 545 176 22 0 chr13 98628230 98628321 -21116577 + AluJ/FLAM SINE Alu 2 94 -218 * 591 178 47 9 chr13 98628318 98628425 -21116473 - AluJb SINE Alu -201 111 1 913 215 11 5 chr13 98628603 98628794 -21116104 + AluJb SINE Alu 120 311 -1 2436 151 20 35 chr13 98628794 98629245 -21115653 + L1MB4 LINE L1 5485 5928 -252 1732 194 12 12 chr13 98629258 98629594 -21115304 + MLT1A1 LTR MaLR 30 365 0 1419 151 50 4 chr13 98629597 98629836 -21115062 + L1MB4 LINE L1 5927 6176 -4 315 161 0 18 chr13 98629981 98630037 -21114861 - MER5B DNA MER1_type -15 163 109 499 298 97 26 chr13 98630397 98630625 -21114273 - MIR SINE MIR -6 256 13 43279 56 2 4 chr13 98631333 98635669 -21109229 + L1PA5 LINE L1 2 4324 -1830 2349 99 0 0 chr13 98635669 98635962 -21108936 - AluY SINE Alu -18 293 1 43279 56 2 4 chr13 98635962 98637789 -21107109 + L1PA5 LINE L1 4324 6152 -2 1618 155 19 11 chr13 98637889 98638160 -21106738 - AluJo SINE Alu -39 273 1 2214 119 7 0 chr13 98638368 98638662 -21106236 + AluSq SINE Alu 1 296 -17 1978 187 77 27 chr13 98638803 98639246 -21105652 + MLT1C LTR MaLR 3 467 0 1304 160 11 116 chr13 98640398 98640760 -21104138 + MER33 DNA MER1_type 1 324 0 2410 161 29 10 chr13 98641813 98642223 -21102675 - MSTB LTR MaLR 0 426 9 2247 115 0 0 chr13 98644159 98644455 -21100443 + AluSq SINE Alu 4 299 -14 248 246 167 39 chr13 98644537 98644695 -21100203 - MIR SINE MIR -56 206 30 2357 101 0 0 chr13 98644932 98645238 -21099660 + AluSg SINE Alu 1 306 -4 430 293 74 35 chr13 98645474 98645932 -21098966 - L1MDa LINE L1 -3612 2770 2275 575 255 80 30 chr13 98645990 98646190 -21098708 - LTR52 LTR ERVL -155 266 57 1411 151 21 95 chr13 98646225 98646509 -21098389 - AluJo SINE Alu -49 263 1 261 239 152 0 chr13 98647387 98647479 -21097419 + L2 LINE L2 3187 3292 -21 233 309 230 20 chr13 98647840 98648092 -21096806 - L2 LINE L2 0 3272 2968 2344 86 0 10 chr13 98648263 98648566 -21096332 + AluSq SINE Alu 2 301 -12 304 283 56 35 chr13 98648967 98649165 -21095733 - HAL1 LINE L1 -10 2497 2296 1300 280 84 66 chr13 98649912 98650633 -21094265 - HAL1 LINE L1 -593 1914 1208 1801 167 10 7 chr13 98650633 98650933 -21093965 - AluJb SINE Alu -11 301 1 1300 280 84 66 chr13 98650933 98651042 -21093856 - HAL1 LINE L1 -1299 1208 1102 2569 45 0 16 chr13 98651042 98651353 -21093545 - AluY SINE Alu -5 306 1 1300 280 84 66 chr13 98651353 98651628 -21093270 - HAL1 LINE L1 -1405 1102 788 719 255 125 29 chr13 98651987 98652371 -21092527 - MLT1L LTR MaLR 0 615 195 325 203 72 0 chr13 98652424 98652493 -21092405 - MLT1L LTR MaLR -536 79 6 2298 131 21 5 chr13 98652689 98653077 -21091821 + MER57A LTR ERV1 10 403 0 842 232 117 3 chr13 98653553 98653948 -21090950 - MLT1J LTR MaLR -8 503 44 506 231 43 0 chr13 98654026 98654143 -21090755 - MIR SINE MIR -31 231 110 21 0 0 0 chr13 98655592 98655613 -21089285 + AT_rich Low_complexity Low_complexity 1 21 0 249 224 0 0 chr13 98655676 98655734 -21089164 + A-rich Low_complexity Low_complexity 1 58 0 220 204 26 18 chr13 98656167 98656280 -21088618 + (TA)n Simple_repeat Simple_repeat 1 114 0 191 122 0 49 chr13 98656286 98656327 -21088571 + (CATA)n Simple_repeat Simple_repeat 4 42 0 3418 184 24 25 chr13 98657060 98657817 -21087081 - L1MA10 LINE L1 0 6334 5579 2128 122 26 0 chr13 98658155 98658459 -21086439 + AluSx SINE Alu 1 312 0 2171 123 7 0 chr13 98659833 98660126 -21084772 - AluSx SINE Alu -13 299 5 1736 228 6 3 chr13 98660323 98660687 -21084211 - MLT1A1 LTR MaLR 0 365 1 2373 89 0 3 chr13 98660923 98661225 -21083673 + AluSc SINE Alu 1 301 -8 940 214 47 23 chr13 98661253 98661468 -21083430 + MER58A DNA MER1_type 1 220 -4 1818 179 11 16 chr13 98661817 98662181 -21082717 - MLT1A1 LTR MaLR 0 365 4 279 313 49 0 chr13 98664138 98664282 -21080616 + L1M4 LINE L1 2728 2878 -3268 579 277 89 90 chr13 98664352 98666665 -21078233 - L1MCa LINE L1 -848 5578 3266 619 210 0 0 chr13 98666665 98666784 -21078114 - L1PA16 LINE L1 -3 6163 6045 579 277 89 90 chr13 98666784 98667590 -21077308 - L1MCa LINE L1 -3160 3266 2461 2835 154 8 9 chr13 98667653 98668179 -21076719 - L1MC3 LINE L1 -1 7784 7260 874 174 6 18 chr13 98668179 98668346 -21076552 + MER2 DNA MER2_type 9 173 -172 977 191 54 41 chr13 98668599 98668913 -21075985 - L1MCa LINE L1 -4425 2001 1684 2564 251 59 61 chr13 98668914 98669061 -21075837 + L2 LINE L2 2200 2346 -967 1338 207 67 4 chr13 98669061 98669331 -21075567 + AluJo SINE Alu 1 287 -25 2564 251 59 61 chr13 98669331 98670133 -21074765 + L2 LINE L2 2346 3138 -175 1515 158 105 4 chr13 98670133 98670399 -21074499 - AluJb SINE Alu -9 303 11 2564 251 59 61 chr13 98670399 98670575 -21074323 + L2 LINE L2 3138 3313 0 210 128 0 0 chr13 98670897 98670936 -21073962 + (TC)n Simple_repeat Simple_repeat 2 40 0 231 269 25 34 chr13 98671107 98671226 -21073672 + L1MEd LINE L1 1005 1122 -4997 * 3893 255 12 7 chr13 98671218 98672403 -21072495 - L1PA16 LINE L1 -2306 3840 2650 6034 175 12 15 chr13 98672404 98674710 -21070188 + L1PA16 LINE L1 3869 6166 0 21 0 0 0 chr13 98674712 98674733 -21070165 + AT_rich Low_complexity Low_complexity 1 21 0 2337 235 32 41 chr13 98676377 98676567 -21068331 + L1ME1 LINE L1 5416 5606 -560 2037 138 3 0 chr13 98676567 98676863 -21068035 + AluSx SINE Alu 1 297 -15 2337 235 32 41 chr13 98676863 98677425 -21067473 + L1ME1 LINE L1 5606 6161 -5 315 122 0 0 chr13 98677447 98677496 -21067402 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 272 289 33 11 chr13 98677505 98677595 -21067303 + MIR SINE MIR 161 252 -10 261 83 0 0 chr13 98677598 98677634 -21067264 + (TTA)n Simple_repeat Simple_repeat 3 38 0 285 319 0 17 chr13 98677639 98677755 -21067143 + MIR SINE MIR 138 251 -11 295 303 22 0 chr13 98678133 98678222 -21066676 - MIR SINE MIR -16 246 156 186 43 0 0 chr13 98678224 98678247 -21066651 + (CAT)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr13 98678866 98678892 -21066006 + AT_rich Low_complexity Low_complexity 1 26 0 2076 120 3 0 chr13 98679209 98679530 -21065368 + AluSg SINE Alu 1 322 0 1331 180 29 14 chr13 98679604 98679882 -21065016 + L1MB3 LINE L1 5776 6057 -126 712 73 0 0 chr13 98679885 98679981 -21064917 + L1PA5 LINE L1 6058 6153 -1 829 108 23 0 chr13 98679981 98680107 -21064791 + L1MB3 LINE L1 6050 6181 -2 257 100 50 0 chr13 98681029 98681069 -21063829 + MER3 DNA MER1_type 1 42 -167 842 204 19 9 chr13 98681070 98681281 -21063617 - MER63 DNA MER1_type -1 1059 847 716 166 43 43 chr13 98681285 98681448 -21063450 + MER3 DNA MER1_type 47 209 0 233 310 69 0 chr13 98682729 98682816 -21062082 + L2 LINE L2 3149 3241 -31 502 234 190 6 chr13 98683143 98683301 -21061597 + MIR3 SINE MIR 15 201 -7 621 261 85 62 chr13 98683643 98683804 -21061094 + LTR16A LTR ERVL 1 157 -300 1875 238 65 26 chr13 98683804 98684338 -21060560 + MLT1H1 LTR MaLR 1 555 0 621 261 85 62 chr13 98684338 98684619 -21060279 + LTR16A LTR ERVL 157 455 -2 21 0 0 0 chr13 98685635 98685656 -21059242 + AT_rich Low_complexity Low_complexity 1 21 0 347 257 40 72 chr13 98686859 98687011 -21057887 + MER5A DNA MER1_type 3 149 -40 889 207 25 35 chr13 98687564 98687767 -21057131 + MIR SINE MIR 2 202 -60 278 298 0 12 chr13 98687805 98687889 -21057009 + L2 LINE L2 3231 3313 0 22 56 0 0 chr13 98688674 98688710 -21056188 + AT_rich Low_complexity Low_complexity 1 36 0 2507 92 20 0 chr13 98690174 98690522 -21054376 - THE1A LTR MaLR 0 355 1 4897 109 19 0 chr13 98690814 98691568 -21053330 - L1PA15 LINE L1 -3 6162 5395 1161 189 45 0 chr13 98691577 98691778 -21053120 - AluJb SINE Alu -1 311 102 238 100 50 0 chr13 98691909 98691949 -21052949 + Alu SINE Alu 106 147 -156 1318 162 21 118 chr13 98691960 98692300 -21052598 + AluJb SINE Alu 1 307 -5 1336 261 83 74 chr13 98692303 98692386 -21052512 - L2 LINE L2 -102 3211 3130 1209 210 140 29 chr13 98692386 98692801 -21052097 + MLT1C LTR MaLR 5 465 -2 1336 261 83 74 chr13 98692801 98693442 -21051456 - L2 LINE L2 -183 3130 2484 1907 154 3 31 chr13 98693680 98693999 -21050899 + AluJb SINE Alu 1 310 -2 280 322 11 40 chr13 98694138 98694315 -21050583 - L1MC4a LINE L1 -1902 5906 5735 614 256 87 0 chr13 98694353 98694525 -21050373 - MIR SINE MIR -10 252 66 698 313 45 14 chr13 98694578 98694930 -21049968 - L1MC4a LINE L1 -2151 5657 5295 1413 346 108 67 chr13 98695236 98696265 -21048633 + L3 LINE CR1 450 1520 -57 332 324 117 50 chr13 98696830 98697188 -21047710 + L2 LINE L2 2813 3194 -78 2411 80 6 10 chr13 98697197 98697508 -21047390 - AluSp SINE Alu -1 312 3 192 77 0 0 chr13 98697580 98697606 -21047292 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2070 126 3 16 chr13 98698577 98698887 -21046011 - AluSx SINE Alu -6 306 1 385 284 97 13 chr13 98701076 98701231 -21043667 - MIR3 SINE MIR -25 183 16 386 231 83 16 chr13 98701312 98701433 -21043465 + MIR SINE MIR 78 206 -56 325 329 106 35 chr13 98701789 98701959 -21042939 - MER5A DNA MER1_type -1 188 7 2189 81 0 7 chr13 98702843 98703116 -21041782 - AluSq SINE Alu -42 271 1 443 335 86 9 chr13 98703133 98703366 -21041532 - MIR SINE MIR -9 253 3 201 244 0 0 chr13 98703375 98703416 -21041482 - L2 LINE L2 -19 3253 3213 855 223 13 40 chr13 98703474 98703698 -21041200 + MER20 DNA MER1_type 1 218 -1 203 290 100 10 chr13 98703751 98703851 -21041047 - L2 LINE L2 -218 3054 2946 295 373 125 10 chr13 98704472 98704767 -21040131 + L2 LINE L2 1716 2044 -1270 6087 122 17 3 chr13 98705158 98706840 -21038058 + L1PA16 LINE L1 4469 6157 -9 31 0 0 0 chr13 98706840 98706871 -21038027 + AT_rich Low_complexity Low_complexity 1 31 0 2926 206 40 14 chr13 98706899 98707556 -21037342 + L1MB7 LINE L1 5488 6161 -23 409 321 85 63 chr13 98709534 98709813 -21035085 - L3 LINE CR1 -1 1576 1288 2315 111 0 0 chr13 98709813 98710111 -21034787 - AluSq SINE Alu -15 298 1 409 321 85 63 chr13 98710111 98710149 -21034749 - L3 LINE CR1 -289 1288 1252 405 164 43 26 chr13 98710401 98710517 -21034381 + Charlie7 DNA MER1_type 34 151 -2461 298 270 44 36 chr13 98710489 98710626 -21034272 + Charlie7 DNA MER1_type 2475 2612 0 * 22 0 0 0 chr13 98712448 98712470 -21032428 + AT_rich Low_complexity Low_complexity 1 22 0 457 271 75 50 chr13 98712475 98712674 -21032224 + MIR SINE MIR 1 204 -58 1160 203 132 7 chr13 98713477 98713758 -21031140 - MLT1F1 LTR MaLR -38 529 214 843 267 66 11 chr13 98713772 98714045 -21030853 - MLT1F LTR MaLR -254 288 1 1985 145 3 0 chr13 98714144 98714440 -21030458 + AluJo SINE Alu 1 297 -15 180 0 0 0 chr13 98714843 98714863 -21030035 + (T)n Simple_repeat Simple_repeat 1 20 0 308 303 42 50 chr13 98715357 98715476 -21029422 - L2 LINE L2 -4 3268 3151 1311 53 0 0 chr13 98716764 98716916 -21027982 + L1PA3 LINE L1 6001 6152 -3 42 0 0 0 chr13 98716916 98716958 -21027940 + AT_rich Low_complexity Low_complexity 1 42 0 327 95 0 0 chr13 98719470 98719512 -21025386 - AluSq/x SINE Alu -175 127 86 1052 191 19 24 chr13 98719512 98719722 -21025176 - AluJo SINE Alu -92 220 12 283 295 36 27 chr13 98719988 98720100 -21024798 - L1MCb LINE L1 -5764 281 169 24 0 0 0 chr13 98722044 98722068 -21022830 + AT_rich Low_complexity Low_complexity 1 24 0 848 195 35 12 chr13 98722869 98723038 -21021860 + MER45A DNA AcHobo 3 175 -3 1468 137 4 65 chr13 98723509 98723786 -21021112 + L1MB1 LINE L1 5374 5633 -679 781 129 16 32 chr13 98723786 98723910 -21020988 - AluSp/q SINE Alu -10 303 182 2985 173 18 15 chr13 98723910 98724454 -21020444 + L1MB1 LINE L1 5623 6168 0 1400 163 18 4 chr13 98724578 98724805 -21020093 + AluJo SINE Alu 3 232 -80 1447 174 0 51 chr13 98724955 98725248 -21019650 - AluJo SINE Alu -34 278 1 298 301 74 51 chr13 98725806 98726062 -21018836 + MLT1H LTR MaLR 124 385 -164 201 405 6 12 chr13 98727095 98727263 -21017635 + GA-rich Low_complexity Low_complexity 3 169 0 1582 203 130 5 chr13 98727910 98728310 -21016588 - L1MC3 LINE L1 -1 7784 7335 860 171 41 6 chr13 98728310 98728716 -21016182 - MLT1E3 LTR MaLR -177 449 3 1825 185 0 0 chr13 98728915 98729213 -21015685 + AluJb SINE Alu 1 298 -14 24 32 0 0 chr13 98729216 98729247 -21015651 + AT_rich Low_complexity Low_complexity 1 31 0 273 220 34 0 chr13 98729411 98729470 -21015428 - MER2 DNA MER2_type -5 340 280 299 173 48 29 chr13 98729471 98729575 -21015323 + (CAATA)n Simple_repeat Simple_repeat 4 109 0 1320 122 14 33 chr13 98729577 98729791 -21015107 - MER2 DNA MER2_type -135 210 1 2137 151 71 15 chr13 98730674 98731066 -21013832 + L1MA4A LINE L1 5885 6298 -5 1960 112 0 0 chr13 98731071 98731329 -21013569 + AluSx SINE Alu 1 258 -54 1376 84 6 6 chr13 98731378 98731557 -21013341 - AluSp SINE Alu -134 179 1 249 305 71 45 chr13 98731735 98731889 -21013009 + L2 LINE L2 2625 2782 -532 348 238 40 30 chr13 98732173 98732274 -21012624 - MER5B DNA MER1_type -76 102 1 302 289 96 30 chr13 98734400 98734535 -21010363 + MER115 DNA AcHobo 21 164 -529 301 179 18 0 chr13 98734546 98734602 -21010296 + MER5A DNA MER1_type 12 68 -121 375 232 50 0 chr13 98734686 98734785 -21010113 + MER115 DNA AcHobo 175 278 -415 722 212 87 37 chr13 98734912 98735153 -21009745 + MER115 DNA AcHobo 439 691 -2 181 288 0 68 chr13 98735377 98735450 -21009448 - L2 LINE L2 0 3272 3205 21 36 0 0 chr13 98736815 98736843 -21008055 + AT_rich Low_complexity Low_complexity 1 28 0 331 202 149 18 chr13 98737195 98737309 -21007589 - L1ME4a LINE L1 -10 6111 5983 1868 123 111 9 chr13 98737397 98737721 -21007177 - THE1C LTR MaLR 0 375 19 611 190 0 33 chr13 98737716 98737837 -21007061 - THE1C LTR MaLR -258 117 1 * 1888 116 37 8 chr13 98738165 98738433 -21006465 - AluSq SINE Alu -37 276 1 342 243 96 62 chr13 98739363 98739540 -21005358 - L1MDa LINE L1 -3891 2649 2467 577 220 35 98 chr13 98739797 98740052 -21004846 - MER112 DNA MER1_type -5 255 17 543 114 0 13 chr13 98740176 98740255 -21004643 + L1PA10 LINE L1 6087 6164 -4 386 269 0 0 chr13 98740268 98740372 -21004526 - HAL1b LINE L1 -835 513 410 1769 199 0 0 chr13 98740398 98740710 -21004188 - AluJo SINE Alu 0 312 1 1702 157 3 69 chr13 98741050 98741382 -21003516 - AluSx SINE Alu -2 310 1 29 0 0 0 chr13 98741628 98741657 -21003241 + AT_rich Low_complexity Low_complexity 1 29 0 2462 205 105 36 chr13 98741985 98742755 -21002143 - L1MC4 LINE L1 -124 7918 7096 282 150 12 25 chr13 98742765 98742845 -21002053 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 1834 167 0 28 chr13 98742932 98743250 -21001648 + AluJo SINE Alu 1 309 -3 1983 126 7 31 chr13 98743360 98743654 -21001244 - AluSx SINE Alu -25 287 1 2376 75 3 0 chr13 98744224 98744517 -21000381 - AluSp SINE Alu -19 294 1 186 263 0 0 chr13 98744808 98744846 -21000052 - MIR SINE MIR -14 248 211 270 184 13 40 chr13 98744850 98744926 -20999972 - MER5C DNA MER1_type -2 322 249 421 292 25 0 chr13 98745050 98745170 -20999728 - MER5C DNA MER1_type -201 123 1 391 324 47 0 chr13 98745190 98745338 -20999560 - MIR SINE MIR -73 189 35 196 271 0 0 chr13 98745350 98745398 -20999500 - MIR SINE MIR -195 67 20 249 254 34 0 chr13 98745664 98745723 -20999175 - MIR SINE MIR -112 150 90 339 286 63 16 chr13 98745747 98745873 -20999025 - MER94 DNA DNA 0 134 3 432 302 54 0 chr13 98746015 98746144 -20998754 - L2 LINE L2 0 3272 3137 648 236 35 0 chr13 98746156 98746300 -20998598 - MER45A DNA AcHobo 0 178 30 1083 255 37 32 chr13 98746619 98746997 -20997901 + LTR16A LTR ERVL 1 450 0 497 87 39 97 chr13 98747997 98748100 -20996798 - L1MA4A LINE L1 0 6303 6207 3999 125 37 50 chr13 98748000 98748721 -20996177 - L1MA4A LINE L1 -3 6300 5589 1730 164 23 33 chr13 98748863 98749406 -20995492 - L1MA4A LINE L1 -715 5588 5048 639 237 44 2 chr13 98749415 98749599 -20995299 + L1MA10 LINE L1 5983 6334 0 1123 252 64 22 chr13 98749940 98749965 -20994933 - L1ME3A LINE L1 -97 6073 6051 2560 53 0 0 chr13 98749965 98750264 -20994634 - AluY SINE Alu -12 299 1 1123 252 64 22 chr13 98750264 98751022 -20993876 - L1ME3A LINE L1 -119 6051 5252 453 82 49 0 chr13 98751043 98751104 -20993794 + U6 snRNA snRNA 1 64 -43 983 138 6 6 chr13 98751109 98751269 -20993629 - MER5A DNA MER1_type -28 161 2 22 0 0 0 chr13 98755020 98755042 -20989856 + AT_rich Low_complexity Low_complexity 1 22 0 330 266 102 16 chr13 98755294 98755422 -20989476 + MIR SINE MIR 32 170 -92 280 307 79 8 chr13 98755713 98755733 -20989165 + MIR SINE MIR 78 95 -167 2352 105 0 0 chr13 98755733 98756037 -20988861 + AluSx SINE Alu 1 304 -8 280 307 79 8 chr13 98756037 98756143 -20988755 + MIR SINE MIR 95 213 -49 27 0 0 0 chr13 98759653 98759680 -20985218 + GC_rich Low_complexity Low_complexity 1 27 0 228 136 250 0 chr13 98761167 98761211 -20983687 - L2 LINE L2 -5 3308 3254 21 0 0 0 chr13 98761567 98761588 -20983310 + AT_rich Low_complexity Low_complexity 1 21 0 253 269 30 0 chr13 98762876 98762943 -20981955 - L2 LINE L2 0 3313 3245 203 288 82 14 chr13 98763239 98763312 -20981586 - MIR SINE MIR -64 198 121 1750 184 7 0 chr13 98763744 98764043 -20980855 + AluJo SINE Alu 1 301 -11 23 0 0 0 chr13 98764610 98764633 -20980265 + AT_rich Low_complexity Low_complexity 1 23 0 2386 89 3 0 chr13 98764723 98765025 -20979873 - AluSx SINE Alu -9 303 1 208 317 142 17 chr13 98765288 98765408 -20979490 - MIR3 SINE MIR -71 137 3 235 306 0 0 chr13 98767292 98767354 -20977544 - MIR SINE MIR -115 147 86 254 306 14 0 chr13 98767758 98767830 -20977068 + L2 LINE L2 3196 3268 -4 3003 171 108 36 chr13 98767973 98768722 -20976176 - L1MC4a LINE L1 -1 7807 7005 2289 106 0 13 chr13 98768836 98769148 -20975750 + AluSg SINE Alu 1 308 -2 288 0 0 0 chr13 98769214 98769246 -20975652 + (GA)n Simple_repeat Simple_repeat 1 32 0 2140 67 45 0 chr13 98772518 98772830 -20972068 - AluY SINE Alu 0 324 1 546 218 205 13 chr13 98773135 98773291 -20971607 + MER5A DNA MER1_type 4 189 0 22 56 0 0 chr13 98773674 98773710 -20971188 + AT_rich Low_complexity Low_complexity 1 36 0 2028 174 40 29 chr13 98774397 98774944 -20969954 + MLT2A2 LTR ERVL 1 554 0 258 32 0 0 chr13 98775370 98775401 -20969497 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 260 366 70 28 chr13 98775402 98775544 -20969354 - L2 LINE L2 -14 3258 3111 243 355 83 8 chr13 98775604 98775725 -20969173 + L2 LINE L2 3093 3222 -50 236 182 45 0 chr13 98775887 98775931 -20968967 + L2 LINE L2 3223 3268 -4 1538 227 24 0 chr13 98776949 98777280 -20967618 - L1MA9 LINE L1 -543 5769 5431 1343 172 23 71 chr13 98777271 98777625 -20967273 + L1MA9 LINE L1 5774 6110 -202 * 25 51 0 0 chr13 98777915 98777954 -20966944 + AT_rich Low_complexity Low_complexity 1 39 0 2121 123 3 0 chr13 98777959 98778261 -20966637 + AluSx SINE Alu 1 303 -9 1517 161 3 70 chr13 98778513 98778811 -20966087 - AluJo SINE Alu -34 278 1 453 133 0 0 chr13 98779060 98779120 -20965778 + AluS SINE Alu 2 61 -257 346 238 0 12 chr13 98779461 98779541 -20965357 - MLT1C LTR MaLR -2 465 387 1375 120 10 0 chr13 98779541 98779755 -20965143 + AluSq SINE Alu 90 305 0 325 296 80 17 chr13 98779847 98780023 -20964875 - MIR3 SINE MIR -2 206 20 457 302 135 8 chr13 98780106 98780351 -20964547 + L1ME4a LINE L1 5753 6028 -93 2080 218 97 29 chr13 98781016 98781711 -20963187 - L1ME1 LINE L1 -10 6154 5432 1398 200 114 53 chr13 98781965 98782395 -20962503 - MLT1C LTR MaLR -6 461 6 216 367 158 0 chr13 98782398 98782575 -20962323 - MIR SINE MIR -23 239 35 331 255 196 33 chr13 98782724 98782877 -20962021 + MER5B DNA MER1_type 1 178 0 1447 92 42 5 chr13 98783641 98783858 -20961040 - L1MA2 LINE L1 0 6304 6080 192 250 0 125 chr13 98785583 98785647 -20959251 - L3 LINE CR1 -10 1567 1512 239 291 9 73 chr13 98785681 98785791 -20959107 - MLT1K LTR MaLR -343 245 143 197 364 0 0 chr13 98785902 98785979 -20958919 - MIR SINE MIR -22 240 164 308 308 67 8 chr13 98786296 98786416 -20958482 - MIR SINE MIR -112 150 24 683 101 176 25 chr13 98787169 98787288 -20957610 + AluJb SINE Alu 162 298 -14 414 271 8 30 chr13 98787312 98787410 -20957488 + MIR SINE MIR 102 198 -64 2242 110 0 0 chr13 98787410 98787711 -20957187 + AluSg SINE Alu 3 303 -7 414 271 8 30 chr13 98787711 98787745 -20957153 + MIR SINE MIR 198 231 -31 399 41 0 0 chr13 98788660 98788709 -20956189 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 2172 125 0 0 chr13 98788710 98788999 -20955899 - AluSx SINE Alu -23 289 1 2411 142 16 8 chr13 98789126 98789513 -20955385 + MLT1B LTR MaLR 1 390 0 23 33 0 0 chr13 98789548 98789578 -20955320 + AT_rich Low_complexity Low_complexity 1 30 0 348 273 188 0 chr13 98790406 98790534 -20954364 + MIR3 SINE MIR 54 205 -3 338 220 91 68 chr13 98790855 98790987 -20953911 + MIR SINE MIR 18 152 -110 2312 89 3 16 chr13 98791331 98791644 -20953254 - AluSc SINE Alu 0 309 1 1619 103 0 0 chr13 98791644 98791857 -20953041 - AluSg/x SINE Alu -8 302 90 2252 101 7 0 chr13 98792341 98792638 -20952260 - AluSp SINE Alu -14 299 1 2143 139 0 0 chr13 98793386 98793687 -20951211 + AluSx SINE Alu 1 301 -11 208 386 98 0 chr13 98793965 98794097 -20950801 - L2 LINE L2 -1 3271 3127 * 305 291 22 16 chr13 98794074 98794176 -20950722 - MIR SINE MIR -73 135 36 1727 159 41 7 chr13 98794450 98794740 -20950158 - AluJb SINE Alu -12 300 1 263 339 51 95 chr13 98794844 98795160 -20949738 - L2 LINE L2 -4 3268 2967 278 305 0 32 chr13 98795214 98795309 -20949589 + L2 LINE L2 3155 3246 -26 1247 167 53 18 chr13 98795697 98795925 -20948973 - MER46A DNA MER2_type 0 236 1 2335 54 10 20 chr13 98796822 98797120 -20947778 - AluSx SINE Alu -17 295 1 392 274 125 28 chr13 98798713 98798961 -20945937 + L2 LINE L2 2325 2596 -718 1231 121 0 0 chr13 98799489 98799654 -20945244 - AluSq SINE Alu -148 165 1 620 276 117 6 chr13 98801349 98801626 -20943272 + L1MB7 LINE L1 5857 6174 -5 2122 109 17 17 chr13 98803067 98803361 -20941537 + AluSx SINE Alu 1 294 -18 621 223 139 58 chr13 98803469 98803778 -20941120 + L1MC4 LINE L1 7709 8042 0 447 249 93 93 chr13 98803779 98804016 -20940882 + MIR SINE MIR 26 262 0 2378 84 0 19 chr13 98804058 98804367 -20940531 - AluSc SINE Alu -6 303 1 553 311 39 5 chr13 98804399 98804605 -20940293 + L2 LINE L2 3100 3312 -1 2112 118 0 0 chr13 98805636 98805916 -20938982 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr13 98805916 98805940 -20938958 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2162 85 4 7 chr13 98805944 98806269 -20938629 + AluSg SINE Alu 1 324 0 1128 147 5 47 chr13 98807985 98808175 -20936723 - AluJb SINE Alu -44 268 87 2145 111 6 22 chr13 98808234 98808549 -20936349 - AluSq SINE Alu -3 310 1 2063 144 0 0 chr13 98808551 98808865 -20936033 - AluSx SINE Alu 0 312 1 2396 97 0 0 chr13 98810281 98810579 -20934319 + AluSq SINE Alu 3 300 -13 378 0 0 0 chr13 98810606 98810648 -20934250 + (T)n Simple_repeat Simple_repeat 1 42 0 1200 136 0 0 chr13 98810984 98811160 -20933738 + AluSg/x SINE Alu 135 310 -2 2099 129 7 0 chr13 98812185 98812495 -20932403 + AluSx SINE Alu 1 312 0 201 147 0 0 chr13 98813224 98813258 -20931640 + (A)n Simple_repeat Simple_repeat 1 34 0 2333 89 0 0 chr13 98813831 98814122 -20930776 - AluSc SINE Alu -18 291 1 243 0 0 0 chr13 98814726 98814753 -20930145 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2183 93 0 0 chr13 98814904 98815182 -20929716 + AluSc SINE Alu 32 309 0 381 320 79 6 chr13 98815277 98815455 -20929443 + MIR SINE MIR 52 242 -20 487 203 113 57 chr13 98815485 98815662 -20929236 - MER112 DNA MER1_type -9 251 65 313 243 261 0 chr13 98815797 98815908 -20928990 + MIR SINE MIR 53 192 -70 364 284 56 20 chr13 98816459 98816642 -20928256 - MIR SINE MIR -68 140 4 3138 182 70 6 chr13 98817312 98817945 -20926953 - L1MB3 LINE L1 -7 6176 5504 408 20 0 0 chr13 98818173 98818222 -20926676 + (TG)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chr13 98819071 98819093 -20925805 + (CA)n Simple_repeat Simple_repeat 1 22 0 833 226 73 5 chr13 98819570 98819774 -20925124 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr13 98820541 98820562 -20924336 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr13 98820845 98820869 -20924029 + (TA)n Simple_repeat Simple_repeat 1 24 0 1235 126 11 11 chr13 98821231 98821421 -20923477 - AluSq SINE Alu -123 190 1 247 236 36 0 chr13 98821421 98821476 -20923422 + L1MC/D LINE L1 5600 5656 -2152 228 254 0 48 chr13 98821656 98821782 -20923116 + T-rich Low_complexity Low_complexity 3 122 0 233 150 50 0 chr13 98821891 98821931 -20922967 - Alu SINE Alu -257 42 1 2315 90 3 3 chr13 98821995 98822305 -20922593 + AluSg SINE Alu 1 310 0 1785 146 20 17 chr13 98823113 98823407 -20921491 - AluSx SINE Alu -1 311 17 3465 108 47 16 chr13 98823891 98824401 -20920497 - MER1A DNA MER1_type -3 526 1 242 154 0 77 chr13 98825351 98825403 -20919495 - L1MC4 LINE L1 -1339 6703 6656 698 209 92 146 chr13 98825404 98825891 -20919007 - MER4C LTR ERV1 -4 461 1 2011 130 3 0 chr13 98825987 98826292 -20918606 + AluSq SINE Alu 1 306 0 1811 137 0 41 chr13 98826657 98826949 -20917949 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr13 98826949 98826973 -20917925 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2077 90 11 7 chr13 98826977 98827300 -20917598 + AluSg SINE Alu 1 324 0 300 128 32 39 chr13 98828446 98828602 -20916296 + (CCCCG)n Simple_repeat Simple_repeat 5 159 0 59 0 0 0 chr13 98828602 98828661 -20916237 + GC_rich Low_complexity Low_complexity 1 59 0 21 36 0 0 chr13 98829974 98830002 -20914896 + AT_rich Low_complexity Low_complexity 1 28 0 2043 96 22 26 chr13 98830766 98831079 -20913819 + AluSx SINE Alu 1 312 0 1676 183 20 7 chr13 98831890 98832371 -20912527 + AluJo SINE Alu 1 312 0 276 220 0 17 chr13 98833214 98833273 -20911625 - AluJ/FLAM SINE Alu -243 59 2 1306 242 55 39 chr13 98833545 98833836 -20911062 - MLT1B LTR MaLR 0 390 90 2154 110 20 0 chr13 98833836 98834137 -20910761 + AluSx SINE Alu 1 307 -5 1306 242 55 39 chr13 98834137 98834229 -20910669 - MLT1B LTR MaLR -300 90 1 663 199 43 0 chr13 98834391 98834532 -20910366 + L1MB3 LINE L1 6037 6183 0 1359 172 129 30 chr13 98835392 98835724 -20909174 - MLT1A1 LTR MaLR 0 365 1 539 246 278 19 chr13 98836151 98836468 -20908430 + L2 LINE L2 2915 3313 0 192 125 0 0 chr13 98836488 98836520 -20908378 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 1655 160 56 4 chr13 98836520 98836789 -20908109 - AluJb SINE Alu -24 288 6 1813 149 55 0 chr13 98836854 98837143 -20907755 - AluSx SINE Alu -7 305 1 1234 135 16 0 chr13 98837858 98838051 -20906847 - AluJb SINE Alu -1 311 116 2229 109 0 10 chr13 98839285 98839589 -20905309 + AluSx SINE Alu 1 301 -11 242 255 223 0 chr13 98839674 98839768 -20905130 - L2 LINE L2 -6 3307 3193 287 284 253 41 chr13 98839815 98840169 -20904729 - L2 LINE L2 -293 3020 2582 1857 209 44 22 chr13 98840169 98840624 -20904274 - MLT1C LTR MaLR 0 467 3 287 284 253 41 chr13 98840624 98840661 -20904237 - L2 LINE L2 -731 2582 2554 1894 104 4 21 chr13 98841271 98841550 -20903348 + AluSx SINE Alu 1 274 -38 2029 95 44 7 chr13 98842221 98842538 -20902360 - AluSq SINE Alu 0 327 1 181 353 59 44 chr13 98843849 98843917 -20900981 + L2 LINE L2 3167 3235 -37 512 246 126 72 chr13 98844391 98844446 -20900452 - L1MC/D LINE L1 -2152 5656 5605 2057 129 0 13 chr13 98844446 98844756 -20900142 + AluSq SINE Alu 1 306 -7 512 246 126 72 chr13 98844756 98844867 -20900031 - L1MC/D LINE L1 -2203 5605 5481 2217 103 0 28 chr13 98845373 98845693 -20899205 - AluSx SINE Alu -1 311 1 21 36 0 0 chr13 98846456 98846484 -20898414 + AT_rich Low_complexity Low_complexity 1 28 0 651 263 27 93 chr13 98849253 98849512 -20895386 + MIR SINE MIR 14 255 -7 360 0 0 0 chr13 98850309 98850349 -20894549 + (TA)n Simple_repeat Simple_repeat 1 40 0 1770 162 0 43 chr13 98850352 98850655 -20894243 - AluJo SINE Alu -22 290 1 21 0 0 0 chr13 98850658 98850679 -20894219 + AT_rich Low_complexity Low_complexity 1 21 0 2427 68 3 10 chr13 98851343 98851654 -20893244 - AluY SINE Alu -2 309 1 395 127 28 0 chr13 98851890 98851961 -20892937 + CT-rich Low_complexity Low_complexity 4 76 0 946 147 17 57 chr13 98851961 98852138 -20892760 - AluSq SINE Alu -43 270 101 381 22 0 0 chr13 98852308 98852354 -20892544 + (TG)n Simple_repeat Simple_repeat 1 46 0 2134 102 4 0 chr13 98852357 98852632 -20892266 - AluSx SINE Alu -36 276 1 797 130 87 0 chr13 98854097 98854212 -20890686 + AluJb SINE Alu 134 258 -54 209 302 70 0 chr13 98856961 98857047 -20887851 + L2 LINE L2 3217 3308 -5 695 128 0 28 chr13 98857787 98857928 -20886970 + (TTCTCC)n Simple_repeat Simple_repeat 3 139 0 2028 148 23 0 chr13 98857938 98858243 -20886655 - AluSx SINE Alu 0 312 1 1328 201 39 14 chr13 98859179 98859458 -20885440 + AluJo SINE Alu 2 287 -25 423 0 0 0 chr13 98860804 98860851 -20884047 + (TG)n Simple_repeat Simple_repeat 2 48 0 430 276 151 36 chr13 98861079 98861271 -20883627 + MIR SINE MIR 15 228 -34 5117 122 53 34 chr13 98863016 98863214 -20881684 - L1PA15 LINE L1 -1 6164 5971 2101 130 10 0 chr13 98863214 98863513 -20881385 - AluSx SINE Alu -10 302 1 5117 122 53 34 chr13 98863513 98863809 -20881089 - L1PA15 LINE L1 -194 5971 5682 1453 167 57 53 chr13 98863809 98864108 -20880790 - AluJb SINE Alu -12 300 1 5117 122 53 34 chr13 98864108 98864498 -20880400 - L1PA15 LINE L1 -483 5682 5262 2619 201 50 12 chr13 98864494 98865137 -20879761 - L1 LINE L1 -1439 4707 4041 * 24 0 0 0 chr13 98865890 98865914 -20878984 + AT_rich Low_complexity Low_complexity 1 24 0 4506 97 15 3 chr13 98866852 98867462 -20877436 - L1PB1 LINE L1 0 6151 5535 698 198 0 0 chr13 98867543 98867659 -20877239 + FLAM_A SINE Alu 1 116 -17 195 328 33 0 chr13 98870262 98870323 -20874575 - L2 LINE L2 -3 3269 3207 801 181 0 0 chr13 98870774 98870901 -20873997 - FLAM_C SINE Alu -6 127 1 1609 169 64 10 chr13 98872988 98873284 -20871614 + AluSx SINE Alu 1 312 0 22 0 0 0 chr13 98873354 98873376 -20871522 + AT_rich Low_complexity Low_complexity 1 22 0 1966 160 7 3 chr13 98873729 98874029 -20870869 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr13 98874695 98874716 -20870182 + AT_rich Low_complexity Low_complexity 1 21 0 1727 133 4 0 chr13 98874716 98874964 -20869934 - AluSx SINE Alu -23 289 41 21 36 0 0 chr13 98875201 98875229 -20869669 + AT_rich Low_complexity Low_complexity 1 28 0 2238 128 0 0 chr13 98876029 98876334 -20868564 + AluSx SINE Alu 1 305 -7 3421 208 9 28 chr13 98876341 98876738 -20868160 - L1MB3 LINE L1 -7 6176 5798 983 157 214 70 chr13 98876738 98876926 -20867972 - MER2 DNA MER2_type 0 344 184 2268 120 0 3 chr13 98876926 98877235 -20867663 + AluSx SINE Alu 1 308 -4 983 157 214 70 chr13 98877235 98877345 -20867553 - MER2 DNA MER2_type -160 184 3 3421 208 9 28 chr13 98877345 98877694 -20867204 - L1MB3 LINE L1 -385 5798 5444 2198 114 7 3 chr13 98877791 98878097 -20866801 - AluSx SINE Alu -5 307 1 203 138 0 0 chr13 98878478 98878507 -20866391 + (GAA)n Simple_repeat Simple_repeat 3 31 0 2246 128 0 0 chr13 98879338 98879650 -20865248 - AluSq SINE Alu -1 312 1 22 0 0 0 chr13 98880193 98880215 -20864683 + AT_rich Low_complexity Low_complexity 1 22 0 2222 92 27 0 chr13 98881865 98882159 -20862739 + AluSx SINE Alu 1 302 -10 503 178 0 23 chr13 98882548 98882722 -20862176 + (TA)n Simple_repeat Simple_repeat 2 171 0 276 30 0 0 chr13 98883882 98883915 -20860983 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 241 363 89 0 chr13 98884267 98884391 -20860507 + MIR SINE MIR 48 182 -80 1771 140 10 41 chr13 98884540 98884856 -20860042 - AluSx SINE Alu 0 307 1 858 176 6 40 chr13 98884856 98885032 -20859866 - FRAM SINE Alu -6 170 1 1997 134 7 13 chr13 98885782 98886080 -20858818 + AluSx SINE Alu 1 296 -16 450 125 0 0 chr13 98886538 98886602 -20858296 - AluSc SINE Alu -142 167 104 181 254 206 0 chr13 98887446 98887509 -20857389 + MIR3 SINE MIR 82 157 -51 1701 136 73 11 chr13 98887734 98888021 -20856877 + AluJb SINE Alu 1 305 -7 237 246 9 100 chr13 98888160 98888270 -20856628 - MIR SINE MIR -70 192 93 2043 114 7 19 chr13 98888851 98889158 -20855740 - AluSg1 SINE Alu -6 303 1 1045 256 77 0 chr13 98889335 98889659 -20855239 + L1MB7 LINE L1 5817 6165 -19 889 304 133 32 chr13 98890258 98890754 -20854144 + L3 LINE CR1 936 1481 -96 2173 108 31 0 chr13 98890899 98891187 -20853711 + AluSx SINE Alu 1 297 -15 854 171 7 0 chr13 98891505 98891645 -20853253 - FLAM_C SINE Alu -2 141 1 23 78 0 0 chr13 98891750 98891801 -20853097 + AT_rich Low_complexity Low_complexity 1 51 0 200 316 0 0 chr13 98892185 98892242 -20852656 - MIR SINE MIR -56 206 150 23 0 0 0 chr13 98895854 98895877 -20849021 + AT_rich Low_complexity Low_complexity 1 23 0 2135 131 7 0 chr13 98897074 98897372 -20847526 - AluSx SINE Alu -12 300 1 2162 135 0 0 chr13 98898445 98898757 -20846141 - AluJb SINE Alu 0 312 1 21 89 0 0 chr13 98898860 98898916 -20845982 + AT_rich Low_complexity Low_complexity 1 56 0 2381 90 0 0 chr13 98899116 98899416 -20845482 - AluSx SINE Alu -12 300 1 294 367 55 0 chr13 98899531 98899659 -20845239 - L2 LINE L2 -1 3271 3137 261 0 0 0 chr13 98900022 98900051 -20844847 + (TG)n Simple_repeat Simple_repeat 2 30 0 396 292 91 51 chr13 98900273 98900645 -20844253 - L2 LINE L2 -2 3311 2920 739 154 138 8 chr13 98900647 98900808 -20844090 + AluSq SINE Alu 137 314 0 2127 105 14 14 chr13 98900808 98901104 -20843794 - THE1B LTR MaLR -67 297 2 1950 144 0 38 chr13 98901478 98901798 -20843100 - AluSx SINE Alu -4 308 1 2010 130 3 0 chr13 98902163 98902468 -20842430 - AluSq SINE Alu 0 306 1 620 215 99 145 chr13 98902564 98903047 -20841851 + MER4C LTR ERV1 1 461 -4 242 154 0 77 chr13 98903048 98903100 -20841798 + L1MC4 LINE L1 6656 6703 -1339 3460 110 47 16 chr13 98904051 98904561 -20840337 + MER1A DNA MER1_type 1 526 -3 1856 142 17 17 chr13 98905045 98905340 -20839558 + AluSx SINE Alu 17 311 -1 2394 90 0 0 chr13 98906148 98906458 -20838440 - AluSg SINE Alu 0 310 1 1726 129 33 11 chr13 98906538 98906809 -20838089 + AluSx SINE Alu 17 293 -19 849 182 0 21 chr13 98906861 98907004 -20837894 + AluJo SINE Alu 2 141 -171 1696 189 0 3 chr13 98907008 98907309 -20837589 + AluJo SINE Alu 11 310 -2 339 288 147 25 chr13 98907314 98907512 -20837386 + MIR SINE MIR 3 224 -38 2280 235 107 28 chr13 98909943 98910730 -20834168 - L1ME2 LINE L1 -1 6232 5384 1573 248 73 61 chr13 98910758 98911291 -20833607 - L1ME2 LINE L1 -2660 3555 3005 2184 130 0 0 chr13 98911291 98911590 -20833308 - AluSx SINE Alu -13 299 1 1573 248 73 61 chr13 98911590 98911984 -20832914 - L1ME2 LINE L1 -3210 3005 2617 * 2261 251 89 46 chr13 98911983 98913244 -20831654 - L1ME2 LINE L1 -3866 2367 1059 774 130 22 65 chr13 98913244 98913382 -20831516 - FLAM_C SINE Alu 0 133 2 2261 251 89 46 chr13 98913382 98913467 -20831431 - L1ME2 LINE L1 -5174 1059 979 312 206 35 78 chr13 98913450 98913591 -20831307 - L1M LINE L1 -791 5393 5259 * 13974 175 59 11 chr13 98913744 98914104 -20830794 - L1PB1 LINE L1 -1 6866 6524 477 0 0 0 chr13 98914104 98914157 -20830741 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 13974 175 59 11 chr13 98914157 98919336 -20825562 - L1PB1 LINE L1 -343 6524 909 702 253 11 0 chr13 98919336 98919526 -20825372 - L1PB1 LINE L1 -6666 197 6 687 136 39 0 chr13 98919548 98919651 -20825247 - AluSg/x SINE Alu -8 302 196 425 284 96 66 chr13 98919658 98919854 -20825044 - L1 LINE L1 -2228 3918 3710 1764 108 68 0 chr13 98919854 98920104 -20824794 - AluSg SINE Alu -41 269 3 425 284 96 66 chr13 98920104 98920178 -20824720 - L1 LINE L1 -2436 3710 3640 833 271 117 26 chr13 98920236 98921116 -20823782 - L1 LINE L1 -2629 3517 2558 1655 112 151 4 chr13 98921942 98922200 -20822698 - AluSx SINE Alu -16 296 1 217 0 61 0 chr13 98922205 98922238 -20822660 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 288 0 0 0 chr13 98923324 98923356 -20821542 + (CA)n Simple_repeat Simple_repeat 1 32 0 371 275 69 19 chr13 98923510 98923670 -20821228 + MIR SINE MIR 86 253 -9 1977 147 0 3 chr13 98923975 98924287 -20820611 - AluSx SINE Alu -1 311 1 733 247 54 5 chr13 98925137 98925323 -20819575 + MIR SINE MIR 60 254 -8 384 261 20 78 chr13 98925527 98925621 -20819277 + MIR SINE MIR 108 191 -71 2109 133 13 0 chr13 98925621 98925929 -20818969 + AluSx SINE Alu 1 312 0 384 261 20 78 chr13 98925929 98925987 -20818911 + MIR SINE MIR 191 251 -11 211 296 0 0 chr13 98926547 98926601 -20818297 + L2 LINE L2 3147 3200 -72 1940 143 11 0 chr13 98927421 98927725 -20817173 - AluSx SINE Alu 0 307 1 1927 106 4 11 chr13 98928671 98928935 -20815963 + AluSp SINE Alu 1 262 -51 725 81 0 0 chr13 98928935 98929022 -20815876 + AluSp/q SINE Alu 190 276 -37 261 0 0 0 chr13 98929025 98929054 -20815844 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2263 125 0 3 chr13 98929578 98929891 -20815007 - AluSx SINE Alu 0 312 1 1388 118 0 15 chr13 98930999 98931203 -20813695 - AluSg/x SINE Alu 0 312 112 1952 151 7 3 chr13 98931806 98932110 -20812788 + AluJb SINE Alu 1 305 -7 1278 177 177 16 chr13 98932424 98932672 -20812226 + AluJo SINE Alu 2 289 -13 1571 113 14 0 chr13 98932679 98932892 -20812006 + AluSq SINE Alu 1 216 -97 263 377 138 7 chr13 98933360 98933498 -20811400 - L2 LINE L2 -18 3254 3099 993 210 68 5 chr13 98934271 98934476 -20810422 - MER58A DNA MER1_type -5 219 2 2195 103 0 0 chr13 98936984 98937265 -20807633 - AluSq SINE Alu -32 281 1 2452 110 48 20 chr13 98938187 98938541 -20806357 - THE1B LTR MaLR 0 364 1 1882 149 0 14 chr13 98939190 98939486 -20805412 - AluSx SINE Alu -20 292 1 2443 172 41 31 chr13 98939513 98940001 -20804897 + L1MB3 LINE L1 5690 6182 -1 208 379 42 0 chr13 98940089 98940184 -20804714 + L2 LINE L2 3146 3244 -28 1901 133 29 0 chr13 98940822 98941100 -20803798 - AluSx SINE Alu -26 286 1 300 214 34 34 chr13 98941819 98941908 -20802990 + MER5A DNA MER1_type 26 114 -75 301 347 46 12 chr13 98942695 98942868 -20802030 + MIR SINE MIR 36 214 -48 1019 238 48 24 chr13 98943660 98943954 -20800944 + L1ME4a LINE L1 5537 5837 -284 187 275 113 28 chr13 98944285 98944427 -20800471 - L2 LINE L2 -864 2450 2297 255 61 0 0 chr13 98944910 98944943 -20799955 + (CA)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chr13 98944943 98944966 -20799932 + (TG)n Simple_repeat Simple_repeat 1 23 0 252 0 0 0 chr13 98945145 98945173 -20799725 + (TA)n Simple_repeat Simple_repeat 1 28 0 211 159 48 32 chr13 98947362 98947425 -20797473 - L2 LINE L2 -47 3266 3203 1936 150 7 3 chr13 98947969 98948275 -20796623 + AluSx SINE Alu 1 307 -5 430 235 138 34 chr13 98948675 98948943 -20795955 + LTR33A LTR ERVL 228 523 0 1883 189 127 18 chr13 98948976 98949416 -20795482 + LTR45B LTR ERV1 2 489 0 236 383 67 8 chr13 98950634 98950754 -20794144 - L2 LINE L2 -8 3264 3138 205 40 0 0 chr13 98950953 98950978 -20793920 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1893 148 4 0 chr13 98950978 98951255 -20793643 - AluSx SINE Alu -1 308 7 282 280 206 17 chr13 98951541 98951716 -20793182 + MLT1J LTR MaLR 1 208 -303 395 141 188 24 chr13 98951753 98951838 -20793060 + MSTC LTR MaLR 21 119 -309 333 140 35 0 chr13 98951835 98951892 -20793006 + Alu SINE Alu 242 300 -2 * 702 113 0 0 chr13 98951894 98952000 -20792898 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 7368 51 9 0 chr13 98953196 98954359 -20790539 + L1PA8 LINE L1 4995 6166 -6 31 26 0 0 chr13 98954359 98954397 -20790501 + AT_rich Low_complexity Low_complexity 1 38 0 287 251 169 58 chr13 98954714 98955009 -20789889 + L2 LINE L2 2367 2694 -620 181 230 81 54 chr13 98955347 98955421 -20789477 + L2 LINE L2 3174 3249 -23 2163 101 4 0 chr13 98955670 98955972 -20788926 + AluSc SINE Alu 1 303 0 224 299 81 0 chr13 98955976 98956063 -20788835 + MER5A DNA MER1_type 75 168 -21 2267 112 3 0 chr13 98956919 98957213 -20787685 + AluSx SINE Alu 1 295 -17 1952 137 53 60 chr13 98957216 98957633 -20787265 + MLT2D LTR ERVL 1 414 0 252 258 75 11 chr13 98957656 98957749 -20787149 - MIR3 SINE MIR -22 186 88 2342 81 27 0 chr13 98957873 98958170 -20786728 - AluSx SINE Alu -7 305 1 22 0 0 0 chr13 98959820 98959842 -20785056 + AT_rich Low_complexity Low_complexity 1 22 0 315 215 97 0 chr13 98960044 98960137 -20784761 - AluS SINE Alu -200 102 1 315 324 9 0 chr13 98960158 98960263 -20784635 + MIR SINE MIR 46 151 -111 1916 118 22 87 chr13 98960512 98960833 -20784065 - AluSx SINE Alu -12 300 1 2141 136 35 16 chr13 98961507 98961875 -20783023 + THE1C LTR MaLR 1 375 0 307 293 81 23 chr13 98961899 98962073 -20782825 + MIR SINE MIR 57 240 -22 498 185 54 0 chr13 98962368 98962460 -20782438 + 7SLRNA srpRNA srpRNA 214 310 -10 25 0 0 0 chr13 98962521 98962546 -20782352 + AT_rich Low_complexity Low_complexity 1 25 0 565 239 50 80 chr13 98962827 98963065 -20781833 + MLT1A1 LTR MaLR 1 231 -134 587 138 11 0 chr13 98964007 98964094 -20780804 + AluJ/FLAM SINE Alu 12 99 -213 2178 95 32 0 chr13 98964218 98964503 -20780395 - AluSq SINE Alu -19 294 1 22 35 0 0 chr13 98964636 98964665 -20780233 + AT_rich Low_complexity Low_complexity 1 29 0 2114 145 3 3 chr13 98965786 98966096 -20778802 - AluSx SINE Alu -2 310 1 21 36 0 0 chr13 98966896 98966924 -20777974 + AT_rich Low_complexity Low_complexity 1 28 0 1743 133 4 0 chr13 98967161 98967409 -20777489 + AluSx SINE Alu 41 289 -23 21 0 0 0 chr13 98967409 98967430 -20777468 + AT_rich Low_complexity Low_complexity 1 21 0 1982 160 7 3 chr13 98968096 98968396 -20776502 - AluJb SINE Alu -11 301 1 22 0 0 0 chr13 98968749 98968771 -20776127 + AT_rich Low_complexity Low_complexity 1 22 0 1613 168 64 14 chr13 98968841 98969138 -20775760 - AluSx SINE Alu 0 312 1 748 181 0 0 chr13 98971225 98971352 -20773546 + FLAM_C SINE Alu 1 127 -6 598 216 0 0 chr13 98974469 98974585 -20770313 - FLAM_A SINE Alu -17 116 1 4217 100 15 5 chr13 98974665 98975276 -20769622 + L1PB1 LINE L1 5535 6151 0 415 305 58 60 chr13 98975737 98976255 -20768643 - L1M4c LINE L1 -4689 1695 1179 2201 107 27 0 chr13 98976363 98976662 -20768236 + AluSx SINE Alu 1 307 -5 945 219 29 29 chr13 98977169 98977379 -20767519 - MER20 DNA MER1_type -8 211 2 252 280 0 76 chr13 98978073 98978191 -20766707 + MER5A DNA MER1_type 33 141 -48 32 57 0 0 chr13 98978343 98978396 -20766502 + AT_rich Low_complexity Low_complexity 1 53 0 1864 183 0 0 chr13 98978630 98978919 -20765979 + AluJb SINE Alu 1 289 -23 661 220 6 12 chr13 98978972 98979140 -20765758 - L1MB3 LINE L1 -195 5988 5822 2004 130 6 50 chr13 98979993 98980315 -20764583 + AluSq SINE Alu 1 308 -5 1166 196 33 59 chr13 98980357 98980627 -20764271 + AluJo SINE Alu 18 280 -32 836 102 19 25 chr13 98981108 98981265 -20763633 + (TTTC)n Simple_repeat Simple_repeat 4 159 0 1757 181 26 0 chr13 98981285 98981589 -20763309 - AluJo SINE Alu 0 312 1 2217 91 23 13 chr13 98982400 98982709 -20762189 - AluSx SINE Alu 0 312 1 313 299 75 102 chr13 98983289 98983583 -20761315 - L1MB3 LINE L1 -517 5604 5319 779 263 101 3 chr13 98984257 98984584 -20760314 - L1MB3 LINE L1 -3072 3074 2716 * 1327 275 130 51 chr13 98984576 98984730 -20760168 - L1MEc LINE L1 -4391 2747 2607 1488 197 69 0 chr13 98984730 98985020 -20759878 - AluSx SINE Alu -2 310 1 1327 275 130 51 chr13 98985020 98985255 -20759643 - L1MEc LINE L1 -4531 2607 2392 2170 120 3 0 chr13 98985255 98985555 -20759343 - AluSx SINE Alu -11 301 1 1327 275 130 51 chr13 98985555 98986316 -20758582 - L1MEc LINE L1 -4746 2392 1331 458 263 96 5 chr13 98986803 98987001 -20757897 - L1MEc LINE L1 -6158 980 765 2237 113 3 0 chr13 98987019 98987312 -20757586 - AluSx SINE Alu -17 295 2 2164 98 24 7 chr13 98987965 98988261 -20756637 - AluSx SINE Alu -11 301 1 846 177 22 39 chr13 98989521 98989702 -20755196 - AluJo SINE Alu -16 296 119 577 171 0 9 chr13 98989710 98989815 -20755083 - U13 snRNA snRNA 0 104 1 750 162 7 35 chr13 98989817 98989959 -20754939 - AluJo SINE Alu -171 141 4 2270 122 3 0 chr13 98991239 98991550 -20753348 + AluSx SINE Alu 1 312 0 22 35 0 0 chr13 98992669 98992698 -20752200 + AT_rich Low_complexity Low_complexity 1 29 0 2178 95 32 0 chr13 98992831 98993116 -20751782 + AluSq SINE Alu 1 294 -19 587 138 11 0 chr13 98993240 98993327 -20751571 - AluJ/FLAM SINE Alu -213 99 12 635 239 46 76 chr13 98994269 98994507 -20750391 - MLT1A1 LTR MaLR -134 231 1 25 0 0 0 chr13 98994788 98994813 -20750085 + AT_rich Low_complexity Low_complexity 1 25 0 498 185 54 0 chr13 98994874 98994966 -20749932 - 7SLRNA srpRNA srpRNA -10 310 214 307 293 81 23 chr13 98995261 98995435 -20749463 - MIR SINE MIR -22 240 57 2141 136 35 16 chr13 98995459 98995827 -20749071 - THE1C LTR MaLR 0 375 1 1916 118 22 87 chr13 98996501 98996822 -20748076 + AluSx SINE Alu 1 300 -12 339 316 0 38 chr13 98997071 98997199 -20747699 - MIR SINE MIR -111 151 28 2248 92 3 35 chr13 98997199 98997514 -20747384 + AluSx SINE Alu 1 305 -7 252 258 75 11 chr13 98997638 98997731 -20747167 + MIR3 SINE MIR 88 186 -22 1952 137 53 60 chr13 98997754 98998171 -20746727 - MLT2D LTR ERVL 0 414 1 2281 109 3 0 chr13 98998174 98998468 -20746430 - AluSx SINE Alu -17 295 1 224 299 81 0 chr13 98999324 98999411 -20745487 - MER5A DNA MER1_type -21 168 75 2162 101 4 0 chr13 98999415 98999717 -20745181 - AluSc SINE Alu 0 303 1 186 280 84 37 chr13 98999948 99000055 -20744843 - L2 LINE L2 -2 3311 3200 292 223 54 54 chr13 99000379 99000491 -20744407 - L2 LINE L2 -620 2694 2583 29 0 0 0 chr13 99000991 99001020 -20743878 + AT_rich Low_complexity Low_complexity 1 29 0 7432 53 7 0 chr13 99001023 99001936 -20742962 - L1PA8 LINE L1 0 6172 5254 7335 50 10 0 chr13 99001040 99002194 -20742704 - L1PA8 LINE L1 -17 6155 4995 1494 33 0 0 chr13 99003395 99003575 -20741323 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 332 140 35 0 chr13 99003594 99003651 -20741247 - Alu SINE Alu -2 300 242 * 397 141 188 24 chr13 99003648 99003733 -20741165 - MSTC LTR MaLR -309 119 21 285 280 206 17 chr13 99003770 99003945 -20740953 - MLT1J LTR MaLR -303 208 1 1794 144 4 0 chr13 99004231 99004533 -20740365 + AluSx SINE Alu 7 309 0 239 383 67 8 chr13 99004732 99004852 -20740046 + L2 LINE L2 3138 3264 -8 1940 189 127 18 chr13 99006074 99006514 -20738384 - LTR45B LTR ERV1 0 489 2 446 239 142 35 chr13 99006547 99006807 -20738091 - LTR33A LTR ERVL 0 523 236 186 43 0 0 chr13 99007215 99007238 -20737660 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1936 127 0 3 chr13 99007240 99007523 -20737375 - AluSx SINE Alu -30 282 1 221 159 48 32 chr13 99008067 99008130 -20736768 + L2 LINE L2 3203 3266 -47 1481 175 21 7 chr13 99009813 99010098 -20734800 - AluJb SINE Alu -23 289 1 2404 34 40 0 chr13 99010739 99011037 -20733861 + AluY SINE Alu 2 311 0 1820 45 0 5 chr13 99011047 99011267 -20733631 + L1PA8 LINE L1 5940 6158 -14 328 333 27 44 chr13 99012119 99012302 -20732596 - L2 LINE L2 -12 3260 3081 187 56 83 0 chr13 99012493 99012529 -20732369 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2066 94 7 3 chr13 99012550 99012836 -20732062 - AluSx SINE Alu -25 287 1 430 308 45 71 chr13 99013709 99014174 -20730724 - L1MC5 LINE L1 -30 7931 7479 310 133 17 0 chr13 99014185 99014245 -20730653 - L1PB3 LINE L1 -4 6150 6090 254 277 7 136 chr13 99016178 99016237 -20728661 + MIR3 SINE MIR 36 101 -107 1771 158 3 7 chr13 99016237 99016528 -20728370 - AluSx SINE Alu -22 290 1 254 277 7 136 chr13 99016528 99016623 -20728275 + MIR3 SINE MIR 101 170 -38 648 295 54 22 chr13 99017343 99017567 -20727331 + MIR SINE MIR 12 242 -20 784 147 0 0 chr13 99018070 99018186 -20726712 + FLAM_C SINE Alu 2 117 -26 455 341 76 5 chr13 99018337 99018548 -20726350 + MIR SINE MIR 8 233 -29 231 250 196 18 chr13 99018704 99018816 -20726082 - L2 LINE L2 -228 3044 2913 2176 89 7 0 chr13 99019595 99019887 -20725011 - AluSq SINE Alu -19 294 1 21 0 0 0 chr13 99020661 99020682 -20724216 + AT_rich Low_complexity Low_complexity 1 21 0 854 309 118 11 chr13 99020994 99021366 -20723532 + L2 LINE L2 2207 2618 -696 411 303 78 30 chr13 99021409 99021742 -20723156 + L2 LINE L2 2820 3168 -145 1485 124 3 115 chr13 99023644 99023983 -20720915 - AluJo SINE Alu -10 302 2 1256 250 50 34 chr13 99024255 99024546 -20720352 - MLT1B LTR MaLR 0 390 90 2016 113 20 0 chr13 99024546 99024847 -20720051 + AluSx SINE Alu 1 307 -5 1256 250 50 34 chr13 99024847 99024939 -20719959 - MLT1B LTR MaLR -300 90 1 627 199 43 0 chr13 99025101 99025242 -20719656 + L1MB3 LINE L1 6037 6183 0 1262 172 129 30 chr13 99026102 99026434 -20718464 - MLT1A1 LTR MaLR 0 365 1 581 252 278 19 chr13 99026862 99027179 -20717719 + L2 LINE L2 2915 3313 0 192 125 0 0 chr13 99027199 99027231 -20717667 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 1565 160 56 4 chr13 99027231 99027500 -20717398 - AluJb SINE Alu -24 288 6 1718 149 55 0 chr13 99027566 99027855 -20717043 - AluSx SINE Alu -7 305 1 1152 135 21 0 chr13 99028570 99028762 -20716136 - AluJb SINE Alu -1 311 116 2127 115 0 3 chr13 99029996 99030300 -20714598 + AluSx SINE Alu 1 303 -9 256 255 223 0 chr13 99030385 99030479 -20714419 - L2 LINE L2 -6 3307 3193 317 291 261 11 chr13 99030526 99030806 -20714092 - L2 LINE L2 -293 3020 2679 1750 209 44 22 chr13 99030880 99031335 -20713563 - MLT1C LTR MaLR 0 467 3 1803 104 4 21 chr13 99031982 99032261 -20712637 + AluSx SINE Alu 1 274 -38 1941 92 44 7 chr13 99032932 99033237 -20711661 - AluSq SINE Alu 0 315 1 182 286 48 32 chr13 99033569 99033632 -20711266 + L2 LINE L2 3205 3268 -4 180 353 59 44 chr13 99034547 99034615 -20710283 + L2 LINE L2 3167 3235 -37 522 246 126 72 chr13 99035089 99035144 -20709754 - L1MC/D LINE L1 -2152 5656 5605 1935 136 0 7 chr13 99035144 99035454 -20709444 + AluSq SINE Alu 1 308 -5 522 246 126 72 chr13 99035454 99035565 -20709333 - L1MC/D LINE L1 -2203 5605 5481 1871 154 0 22 chr13 99036071 99036390 -20708508 - AluSx SINE Alu 0 312 1 324 328 51 34 chr13 99036455 99036632 -20708266 + L1MEc LINE L1 1561 1740 -4656 30 45 0 0 chr13 99036633 99036677 -20708221 + AT_rich Low_complexity Low_complexity 1 44 0 297 298 0 78 chr13 99036806 99036947 -20707951 - MER5A DNA MER1_type -27 162 33 310 133 17 0 chr13 99039259 99039319 -20705579 + L1PB3 LINE L1 6090 6150 -4 1856 133 6 50 chr13 99040219 99040541 -20704357 + AluSq SINE Alu 1 308 -5 1068 205 31 56 chr13 99040583 99040871 -20704027 + AluJo SINE Alu 18 298 -14 377 277 43 76 chr13 99093735 99093797 -20651101 - MER5B DNA MER1_type 0 178 116 2264 94 3 0 chr13 99093797 99094085 -20650813 + AluSp SINE Alu 2 290 -23 416 19 19 0 chr13 99094092 99094145 -20650753 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 377 277 43 76 chr13 99094145 99094258 -20650640 - MER5B DNA MER1_type -68 110 1 2056 80 42 7 chr13 99094404 99094690 -20650208 + AluSx SINE Alu 1 296 -16 883 217 11 11 chr13 99094690 99094879 -20650019 + AluJb SINE Alu 117 305 -7 2039 84 22 0 chr13 99095747 99096021 -20648877 + AluSq SINE Alu 15 294 -19 235 259 190 17 chr13 99096796 99096912 -20647986 + L2 LINE L2 2909 3044 -228 390 346 76 5 chr13 99097068 99097279 -20647619 - MIR SINE MIR -29 233 8 801 145 0 0 chr13 99097430 99097547 -20647351 - FLAM_C SINE Alu -26 117 1 857 208 19 0 chr13 99098606 99098765 -20646133 + FRAM SINE Alu 1 158 -18 2517 45 3 0 chr13 99098768 99099056 -20645842 + AluSg SINE Alu 1 289 -21 715 291 77 35 chr13 99099059 99099292 -20645606 + L1MEc LINE L1 1587 1846 -4550 1274 194 79 11 chr13 99099292 99099570 -20645328 + AluSx SINE Alu 1 297 -15 715 291 77 35 chr13 99099570 99099738 -20645160 + L1MEc LINE L1 1846 2005 -4391 * 812 263 101 3 chr13 99099730 99100057 -20644841 + L1MEc LINE L1 2785 3143 -3072 780 196 7 14 chr13 99101094 99101237 -20643661 - MER2 DNA MER2_type 0 345 204 851 117 5 206 chr13 99101397 99101454 -20643444 - MER2 DNA MER2_type -167 178 111 2399 123 6 0 chr13 99101454 99101804 -20643094 + L1PA16 LINE L1 5806 6157 -9 851 117 5 206 chr13 99101804 99101969 -20642929 - MER2 DNA MER2_type -234 111 1 463 109 0 0 chr13 99102595 99102667 -20642231 - Alu SINE Alu -7 305 240 21 36 0 0 chr13 99102914 99102942 -20641956 + AT_rich Low_complexity Low_complexity 1 28 0 1721 189 3 0 chr13 99103026 99103328 -20641570 - AluJo SINE Alu -4 308 6 206 250 0 0 chr13 99104730 99104778 -20640120 + (CA)n Simple_repeat Simple_repeat 2 49 0 2168 107 3 0 chr13 99106055 99106363 -20638535 + AluSx SINE Alu 1 309 -3 304 317 29 10 chr13 99106487 99106591 -20638307 - MER5B DNA MER1_type -10 168 63 2042 111 7 7 chr13 99106709 99106998 -20637900 - AluSq SINE Alu -24 289 1 29 0 0 0 chr13 99107307 99107336 -20637562 + AT_rich Low_complexity Low_complexity 1 29 0 1668 185 57 129 chr13 99107545 99108298 -20636600 + L1MC5 LINE L1 6705 7403 -558 1930 96 55 0 chr13 99108403 99108674 -20636224 + AluSq SINE Alu 1 286 -27 333 0 0 0 chr13 99108674 99108711 -20636187 + (CA)n Simple_repeat Simple_repeat 2 38 0 281 261 67 17 chr13 99108717 99108836 -20636062 + L1MC5 LINE L1 7784 7908 -53 1822 148 0 0 chr13 99108858 99109141 -20635757 + AluSx SINE Alu 28 310 -2 2214 94 0 7 chr13 99109225 99109522 -20635376 + AluSc SINE Alu 1 295 -14 764 108 85 8 chr13 99110075 99110204 -20634694 - MER85 DNA T2_type 0 139 1 2324 79 0 0 chr13 99110377 99110668 -20634230 - AluSg SINE Alu -19 291 1 801 208 19 0 chr13 99110671 99110830 -20634068 - FRAM SINE Alu -18 158 1 1697 167 10 7 chr13 99111747 99112053 -20632845 + AluSx SINE Alu 1 307 -5 331 320 25 8 chr13 99112331 99112453 -20632445 + MIR SINE MIR 37 160 -102 1590 152 94 0 chr13 99112456 99112733 -20632165 + AluJb SINE Alu 1 303 -9 684 0 0 0 chr13 99112739 99112815 -20632083 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 253 233 0 19 chr13 99112862 99112965 -20631933 + (CTA)n Simple_repeat Simple_repeat 1 101 0 198 0 0 0 chr13 99116061 99116083 -20628815 + (CA)n Simple_repeat Simple_repeat 1 22 0 1552 200 88 5 chr13 99116084 99116459 -20628439 + L1MC4 LINE L1 6704 7109 -933 458 202 57 24 chr13 99116491 99116615 -20628283 + L1MC4 LINE L1 7214 7341 -701 1293 189 6 82 chr13 99116771 99116909 -20627989 + AluJo SINE Alu 3 150 -162 1639 147 45 11 chr13 99116909 99117195 -20627703 + AluSx SINE Alu 1 296 -16 1293 189 6 82 chr13 99117195 99117384 -20627514 + AluJo SINE Alu 150 305 -7 228 265 0 0 chr13 99118553 99118602 -20626296 + L2 LINE L2 3265 3313 0 1772 147 0 69 chr13 99118896 99119230 -20625668 - AluJo SINE Alu -1 311 1 203 269 29 58 chr13 99119385 99119489 -20625409 + CT-rich Low_complexity Low_complexity 4 104 0 2419 204 66 45 chr13 99119955 99120536 -20624362 + Tigger7 DNA MER2_type 1 568 -2019 1967 128 10 0 chr13 99120536 99120833 -20624065 + AluSx SINE Alu 1 300 -12 2419 204 66 45 chr13 99120833 99120965 -20623933 + Tigger7 DNA MER2_type 568 2587 0 316 302 153 28 chr13 99121363 99121578 -20623320 + L2 LINE L2 3070 3311 -2 2130 107 10 0 chr13 99121605 99121914 -20622984 + AluSx SINE Alu 1 312 0 1835 158 0 16 chr13 99122037 99122340 -20622558 - AluJb SINE Alu -14 298 1 647 229 24 98 chr13 99122554 99122851 -20622047 + L2 LINE L2 2270 2544 -770 457 279 150 18 chr13 99122863 99123089 -20621809 + L2 LINE L2 3057 3312 -1 23 0 0 0 chr13 99123171 99123194 -20621704 + AT_rich Low_complexity Low_complexity 1 23 0 722 179 143 14 chr13 99124240 99124380 -20620518 - FRAM SINE Alu -21 155 1 1900 146 0 13 chr13 99124616 99124932 -20619966 + AluJb SINE Alu 1 312 0 2233 132 42 86 chr13 99125139 99125531 -20619367 - Tigger2a DNA MER2_type -2274 434 63 2034 95 36 10 chr13 99125531 99125835 -20619063 + AluSx SINE Alu 1 312 0 2233 132 42 86 chr13 99125835 99125896 -20619002 - Tigger2a DNA MER2_type -2645 63 1 429 286 80 23 chr13 99126218 99126393 -20618505 + L2 LINE L2 2549 2733 -581 309 299 173 38 chr13 99126440 99126781 -20618117 + L2 LINE L2 2854 3240 -73 2239 101 23 0 chr13 99127247 99127553 -20617345 + AluSp SINE Alu 1 313 0 846 216 73 0 chr13 99127568 99127772 -20617126 - MER20 DNA MER1_type 0 219 1 996 194 22 0 chr13 99128111 99128291 -20616607 + MER5A DNA MER1_type 1 184 -5 2007 116 0 7 chr13 99129310 99129604 -20615294 + AluSx SINE Alu 3 294 -18 1310 177 0 25 chr13 99129958 99130201 -20614697 + AluJo SINE Alu 1 237 -75 546 279 29 44 chr13 99130376 99130580 -20614318 + L1MC4 LINE L1 6458 6658 -1384 2840 234 31 20 chr13 99130597 99130774 -20614124 - MER82 DNA MER2_type -6 647 473 2177 106 0 7 chr13 99130774 99131077 -20613821 - AluSx SINE Alu -11 301 1 2840 234 31 20 chr13 99131077 99131537 -20613361 - MER82 DNA MER2_type -180 473 3 207 100 0 0 chr13 99131537 99131567 -20613331 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 3378 223 123 58 chr13 99131568 99131683 -20613215 + L1MC4 LINE L1 6636 6742 -1300 2214 101 14 0 chr13 99131683 99131980 -20612918 + AluSx SINE Alu 1 301 -11 3378 223 123 58 chr13 99131980 99133007 -20611891 + L1MC4 LINE L1 6742 7877 -165 2100 136 0 0 chr13 99133007 99133309 -20611589 - AluSx SINE Alu -8 304 3 3378 223 123 58 chr13 99133309 99133487 -20611411 + L1MC4 LINE L1 7877 8042 0 525 181 0 0 chr13 99133631 99133714 -20611184 + AluJ/FLAM SINE Alu 1 83 -229 291 176 235 0 chr13 99134112 99134180 -20610718 - MIR SINE MIR -21 241 158 1070 221 121 75 chr13 99134190 99134668 -20610230 + MLT1D LTR MaLR 7 505 0 308 320 33 16 chr13 99134672 99134794 -20610104 - MIR SINE MIR -111 151 28 267 93 0 0 chr13 99134936 99134975 -20609923 + THE1A LTR MaLR 1 34 -321 244 116 0 0 chr13 99134966 99134983 -20609915 - Alu SINE Alu -2 297 281 2181 132 41 44 chr13 99134983 99135022 -20609876 + THE1B LTR MaLR 1 39 -325 2045 83 30 40 chr13 99135022 99135324 -20609574 - AluSq SINE Alu -14 299 1 2181 132 41 44 chr13 99135324 99135649 -20609249 + THE1B LTR MaLR 39 364 0 810 240 117 71 chr13 99135925 99136163 -20608735 + MER77 LTR ERV1 141 367 -238 5633 132 17 31 chr13 99136163 99137146 -20607752 + LTR5 LTR ERVK 1 969 0 810 240 117 71 chr13 99137146 99137370 -20607528 + MER77 LTR ERV1 367 594 -11 802 130 0 0 chr13 99137454 99137577 -20607321 + AluSg/x SINE Alu 169 291 -21 225 0 0 0 chr13 99137577 99137602 -20607296 + (TA)n Simple_repeat Simple_repeat 2 26 0 307 292 100 39 chr13 99137716 99137846 -20607052 + L1ME3A LINE L1 6033 6170 0 203 139 0 47 chr13 99137979 99138022 -20606876 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 306 202 90 22 chr13 99138100 99138189 -20606709 + L1MC5 LINE L1 7817 7911 -50 225 94 0 0 chr13 99138483 99138515 -20606383 + (A)n Simple_repeat Simple_repeat 1 32 0 230 173 49 74 chr13 99138613 99138694 -20606204 + MLT1J2 LTR MaLR 32 110 -340 373 266 43 0 chr13 99138785 99138879 -20606019 - MER5A DNA MER1_type -78 111 14 2289 66 0 0 chr13 99138956 99139243 -20605655 + AluY SINE Alu 1 287 -24 2095 89 21 3 chr13 99140191 99140482 -20604416 - AluSq SINE Alu -17 296 1 2378 84 0 0 chr13 99140748 99141057 -20603841 + AluSx SINE Alu 1 309 -3 1203 81 50 0 chr13 99141786 99141946 -20602952 + THE1B LTR MaLR 1 168 -196 765 67 17 25 chr13 99141946 99142065 -20602833 - AluY SINE Alu 0 311 194 1261 131 29 15 chr13 99142065 99142271 -20602627 + THE1B LTR MaLR 156 364 0 1505 249 51 49 chr13 99142367 99142861 -20602037 + MER74B LTR ERVL 46 540 -82 376 198 55 11 chr13 99142790 99142881 -20602017 - MER88 LTR ERVL -291 173 79 * 2258 94 0 0 chr13 99142937 99143235 -20601663 + AluSx SINE Alu 1 298 -14 488 173 0 0 chr13 99143826 99143907 -20600991 + AluSg/x SINE Alu 217 297 -15 1567 179 23 23 chr13 99144274 99144576 -20600322 + AluJo SINE Alu 1 302 -10 598 146 0 0 chr13 99144581 99144677 -20600221 + AluJ/FRAM SINE Alu 215 310 -2 1998 120 0 0 chr13 99144879 99145195 -20599703 + AluSx SINE Alu 1 316 0 2133 108 10 0 chr13 99145441 99145737 -20599161 + AluSq SINE Alu 1 299 -14 215 213 188 29 chr13 99145743 99145893 -20599005 - L2 LINE L2 -208 3105 2925 398 277 20 0 chr13 99146460 99146561 -20598337 + MER94 DNA DNA 19 121 -13 1817 140 0 34 chr13 99146655 99146977 -20597921 + AluJb SINE Alu 1 311 -1 237 268 24 61 chr13 99147481 99147563 -20597335 + MIR3 SINE MIR 78 156 -52 1721 138 0 4 chr13 99148317 99148578 -20596320 + AluSx SINE Alu 41 300 -12 198 0 0 0 chr13 99148716 99148738 -20596160 + (A)n Simple_repeat Simple_repeat 1 22 0 1447 79 49 0 chr13 99149265 99149468 -20595430 + AluSg/x SINE Alu 95 307 -5 1933 97 0 91 chr13 99149968 99150298 -20594600 + AluSx SINE Alu 1 300 -12 594 178 0 0 chr13 99150299 99150389 -20594509 - MLT1B LTR MaLR -300 90 1 198 219 0 0 chr13 99150788 99150852 -20594046 + G-rich Low_complexity Low_complexity 1 64 0 333 88 59 39 chr13 99150885 99150987 -20593911 + G-rich Low_complexity Low_complexity 4 107 0 1725 98 0 0 chr13 99151097 99151322 -20593576 - AluSg SINE Alu -85 225 1 1974 112 7 3 chr13 99151426 99151721 -20593177 + AluSg SINE Alu 1 296 -14 438 176 6 19 chr13 99151742 99151829 -20593069 - MER5A DNA MER1_type 0 189 97 989 126 13 0 chr13 99151851 99152002 -20592896 - FRAM SINE Alu -2 174 22 1992 87 72 0 chr13 99152125 99152401 -20592497 + AluSp SINE Alu 1 296 -17 1614 70 9 40 chr13 99152408 99152635 -20592263 + AluSp SINE Alu 2 221 -92 1782 150 0 19 chr13 99152665 99152978 -20591920 - AluJb SINE Alu -5 307 1 190 256 167 22 chr13 99152979 99153069 -20591829 - L2 LINE L2 -23 3290 3188 237 187 173 27 chr13 99153142 99153217 -20591681 + L2 LINE L2 3173 3258 -55 343 275 286 26 chr13 99153239 99153428 -20591470 + MIR SINE MIR 14 251 -11 1592 199 0 7 chr13 99153453 99153754 -20591144 + AluJb SINE Alu 1 299 -13 1975 132 3 0 chr13 99153758 99154054 -20590844 + AluSx SINE Alu 1 297 -15 2230 95 0 0 chr13 99154613 99154909 -20589989 - AluSx SINE Alu -16 296 1 2265 99 3 0 chr13 99155164 99155476 -20589422 + AluSq SINE Alu 1 313 0 1658 163 28 3 chr13 99155506 99155794 -20589104 + AluSx SINE Alu 1 295 -17 2113 116 0 0 chr13 99155796 99156089 -20588809 + AluSg SINE Alu 1 293 -17 593 195 93 0 chr13 99156119 99156237 -20588661 + FAM SINE Alu 26 154 -31 1998 122 0 0 chr13 99156250 99156559 -20588339 + AluY SINE Alu 1 309 0 323 227 78 43 chr13 99156560 99156724 -20588174 - MIR SINE MIR -56 206 29 1649 112 0 0 chr13 99157013 99157236 -20587662 + AluSx SINE Alu 1 223 -89 180 363 59 10 chr13 99157864 99157966 -20586932 + MIR SINE MIR 31 137 -125 426 256 68 57 chr13 99158243 99158305 -20586593 - MER5B DNA MER1_type 0 178 118 2180 90 3 0 chr13 99158305 99158593 -20586305 + AluSp SINE Alu 2 290 -23 509 0 16 0 chr13 99158593 99158654 -20586244 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 426 256 68 57 chr13 99158654 99158766 -20586132 - MER5B DNA MER1_type -59 119 1 2280 104 0 0 chr13 99158912 99159221 -20585677 + AluSq SINE Alu 1 309 -4 473 82 0 0 chr13 99159250 99159323 -20585575 + AluSp/q SINE Alu 235 307 -6 1252 114 0 5 chr13 99159323 99159507 -20585391 + AluSg/x SINE Alu 118 300 -10 1757 168 0 7 chr13 99159561 99159859 -20585039 + AluJb SINE Alu 1 296 -16 187 233 23 0 chr13 99159973 99160016 -20584882 + L3 LINE CR1 558 601 -976 1291 142 10 0 chr13 99160237 99160441 -20584457 + AluSg/x SINE Alu 83 288 -24 511 182 27 36 chr13 99160456 99160566 -20584332 + L2 LINE L2 2255 2363 -951 1773 162 0 3 chr13 99160567 99160863 -20584035 + AluJb SINE Alu 3 297 -15 225 250 50 50 chr13 99160863 99160943 -20583955 + L3 LINE CR1 1225 1304 -273 411 191 0 0 chr13 99160968 99161036 -20583862 + MER57A LTR ERV1 302 369 -34 253 254 155 0 chr13 99161172 99161243 -20583655 + L3 LINE CR1 1494 1575 -2 1403 124 18 0 chr13 99161649 99161866 -20583032 + AluSg/x SINE Alu 83 303 -7 3063 185 15 42 chr13 99163482 99163618 -20581280 + L1MB3 LINE L1 5541 5679 -504 2136 120 0 0 chr13 99163618 99163919 -20580979 + AluSg SINE Alu 1 301 -9 3063 185 15 42 chr13 99163919 99164443 -20580455 + L1MB3 LINE L1 5679 6183 0 1476 90 0 0 chr13 99165333 99165521 -20579377 - AluSg SINE Alu -122 188 1 1093 128 6 0 chr13 99165530 99165694 -20579204 - AluSg/x SINE Alu -5 305 141 191 269 77 0 chr13 99165738 99165790 -20579108 - L2 LINE L2 -79 3193 3138 407 289 130 49 chr13 99165807 99165862 -20579036 - MLT1J2 LTR MaLR -14 436 387 1470 113 4 76 chr13 99165862 99166137 -20578761 + AluSx SINE Alu 46 300 -12 407 289 130 49 chr13 99166137 99166427 -20578471 - MLT1J2 LTR MaLR -63 387 63 2115 117 0 9 chr13 99166427 99166743 -20578155 + AluSq SINE Alu 1 313 0 231 245 41 71 chr13 99166873 99166971 -20577927 - MER5A DNA MER1_type -2 187 93 787 163 0 43 chr13 99166991 99167132 -20577766 + AluJo SINE Alu 2 136 -176 1854 140 0 4 chr13 99167134 99167412 -20577486 + AluSc SINE Alu 1 277 -32 1666 113 0 17 chr13 99167441 99167680 -20577218 + AluSg SINE Alu 3 237 -73 716 193 0 0 chr13 99167781 99167895 -20577003 + FRAM SINE Alu 36 149 -27 447 35 0 0 chr13 99167895 99167952 -20576946 + (CA)n Simple_repeat Simple_repeat 2 58 0 784 186 0 0 chr13 99167962 99168086 -20576812 + FLAM_C SINE Alu 2 125 -18 27 49 0 0 chr13 99168086 99168127 -20576771 + AT_rich Low_complexity Low_complexity 1 41 0 2089 104 19 3 chr13 99168748 99169055 -20575843 + AluSq SINE Alu 1 312 -1 465 134 0 0 chr13 99169454 99169521 -20575377 + AluJ/FLAM SINE Alu 7 73 -239 868 156 30 30 chr13 99169532 99169731 -20575167 - LTR56 LTR ERV1 -246 199 1 2046 112 0 42 chr13 99169768 99170081 -20574817 + AluSx SINE Alu 3 302 -10 539 280 12 36 chr13 99170165 99170333 -20574565 - MER5A DNA MER1_type -25 164 1 325 304 95 0 chr13 99170476 99170624 -20574274 + MIR SINE MIR 2 163 -99 1555 114 24 71 chr13 99170747 99171044 -20573854 + AluJo SINE Alu 17 299 -13 921 77 250 87 chr13 99171250 99171446 -20573452 - MER30 DNA MER1_type 0 230 3 2145 72 4 0 chr13 99171620 99171898 -20573000 - AluSg SINE Alu -31 279 1 23 101 0 0 chr13 99172761 99172840 -20572058 + GC_rich Low_complexity Low_complexity 1 79 0 27 0 0 0 chr13 99173077 99173104 -20571794 + GC_rich Low_complexity Low_complexity 1 27 0 225 0 0 0 chr13 99174102 99174127 -20570771 + (TG)n Simple_repeat Simple_repeat 1 25 0 788 148 22 15 chr13 99174140 99174275 -20570623 - AluJ SINE Alu -66 246 111 741 132 0 0 chr13 99174425 99174531 -20570367 - AluJ SINE Alu -205 107 2 230 299 92 0 chr13 99174572 99174659 -20570239 - MIR SINE MIR -113 149 55 869 175 0 72 chr13 99175007 99175178 -20569720 + AluJo SINE Alu 79 236 -76 2118 108 3 3 chr13 99175178 99175475 -20569423 + AluSq SINE Alu 1 297 -16 869 175 0 72 chr13 99175475 99175497 -20569401 + AluJo SINE Alu 236 258 -54 754 167 0 0 chr13 99175499 99175619 -20569279 + AluJo SINE Alu 18 137 -175 1518 171 21 3 chr13 99175621 99175907 -20568991 + AluJo SINE Alu 5 295 -17 621 190 0 9 chr13 99176006 99176122 -20568776 - FLAM_A SINE Alu -16 126 12 229 213 0 0 chr13 99176662 99176709 -20568189 + MIR SINE MIR 99 145 -117 2085 114 3 0 chr13 99176712 99177018 -20567880 + AluSx SINE Alu 1 307 -5 932 162 0 39 chr13 99177018 99177197 -20567701 + AluSg/x SINE Alu 134 305 -7 1607 184 0 10 chr13 99177205 99177328 -20567570 + AluJo SINE Alu 1 124 -188 226 50 50 0 chr13 99177328 99177368 -20567530 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1607 184 0 10 chr13 99177368 99177543 -20567355 + AluJo SINE Alu 124 296 -16 210 262 82 0 chr13 99177669 99177730 -20567168 - L2 LINE L2 -3 3310 3245 1708 136 28 11 chr13 99177756 99178072 -20566826 - AluJb SINE Alu 0 312 1 7763 18 3 3 chr13 99178088 99179173 -20565725 + L1PA4 LINE L1 5071 6155 0 753 133 26 0 chr13 99179215 99179328 -20565570 - FLAM_C SINE Alu -26 117 2 325 277 60 66 chr13 99179395 99179561 -20565337 + MER91A DNA MER1_type 8 172 -24 342 193 12 60 chr13 99179770 99179853 -20565045 + MIR3 SINE MIR 81 159 -49 1205 161 61 1 chr13 99179919 99180137 -20564761 + MER61D LTR ERV1 98 419 -81 318 44 22 22 chr13 99180184 99180229 -20564669 + MER4A LTR ERV1 54 98 -566 305 132 19 19 chr13 99180229 99180282 -20564616 + MER4A LTR ERV1 261 313 -351 1934 108 24 17 chr13 99180320 99180528 -20564370 + AluSq SINE Alu 1 213 -100 1994 93 268 6 chr13 99180528 99180883 -20564015 - LTR7 LTR ERV1 -2 448 1 1934 108 24 17 chr13 99180883 99180970 -20563928 + AluSq SINE Alu 213 298 -15 1640 169 26 13 chr13 99180983 99181291 -20563607 + AluJb SINE Alu 1 312 0 6227 125 17 30 chr13 99181294 99182141 -20562757 + HSMAR2 DNA Mariner 312 1146 -156 2237 98 3 0 chr13 99182141 99182437 -20562461 - AluSp SINE Alu -16 297 1 6227 125 17 30 chr13 99182437 99182581 -20562317 + HSMAR2 DNA Mariner 1146 1290 -12 515 32 0 0 chr13 99182592 99182655 -20562243 - HY3 scRNA scRNA -2 99 37 851 95 29 7 chr13 99182675 99182812 -20562086 + LTR16C LTR ERVL 352 491 0 792 182 45 15 chr13 99182894 99183092 -20561806 + MER33 DNA MER1_type 5 208 -116 683 284 181 3 chr13 99183104 99183425 -20561473 - L2 LINE L2 -1187 2127 1750 1813 166 96 12 chr13 99183508 99183852 -20561046 + THE1C LTR MaLR 1 373 -2 1428 220 103 39 chr13 99183859 99184295 -20560603 + LTR16C LTR ERVL 1 464 -27 275 220 0 0 chr13 99184375 99184434 -20560464 + L1ME4a LINE L1 5966 6024 -97 1790 169 0 3 chr13 99184482 99184778 -20560120 - AluJb SINE Alu -9 303 9 1572 165 33 13 chr13 99184809 99185112 -20559786 - AluJo SINE Alu -3 309 1 255 31 0 0 chr13 99185121 99185153 -20559745 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2210 115 3 0 chr13 99185322 99185634 -20559264 + AluSp SINE Alu 1 313 0 1882 152 6 16 chr13 99185663 99185978 -20558920 + AluJb SINE Alu 1 312 0 264 277 106 0 chr13 99186145 99186239 -20558659 - MIR SINE MIR -71 191 88 2034 114 20 0 chr13 99186634 99186932 -20557966 + AluSq SINE Alu 1 304 -9 219 69 0 0 chr13 99187181 99187210 -20557688 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2260 104 0 0 chr13 99187214 99187513 -20557385 + AluSx SINE Alu 1 299 -13 803 179 8 15 chr13 99187561 99187695 -20557203 - FLAM_C SINE Alu 0 133 1 929 163 0 0 chr13 99187713 99187889 -20557009 - AluSg/x SINE Alu 0 310 135 2314 87 0 0 chr13 99187889 99188187 -20556711 - AluSc SINE Alu -11 298 1 4066 182 39 52 chr13 99188599 99189565 -20555333 + LTR13 LTR ERVK 1 954 0 1995 138 0 0 chr13 99189786 99190084 -20554814 - AluSx SINE Alu -14 298 1 1685 150 30 93 chr13 99190170 99190537 -20554361 + MER7A DNA MER2_type 2 343 -3 2246 76 10 0 chr13 99190597 99190899 -20553999 + AluSq SINE Alu 1 305 -8 762 247 0 6 chr13 99190946 99191108 -20553790 + FRAM SINE Alu 1 160 -16 1794 134 69 0 chr13 99191195 99191485 -20553413 + AluSg SINE Alu 1 310 0 1136 145 2 85 chr13 99191500 99191920 -20552978 + L1M2 LINE L1 5042 5583 -708 2213 107 3 0 chr13 99192212 99192520 -20552378 + AluSx SINE Alu 1 309 -3 537 101 0 0 chr13 99192523 99192628 -20552270 + AluY SINE Alu 214 318 0 1266 163 5 0 chr13 99193135 99193344 -20551554 + AluJb SINE Alu 86 295 -17 248 195 273 0 chr13 99193458 99193535 -20551363 + MIR SINE MIR 154 251 -11 226 258 45 0 chr13 99194015 99194083 -20550815 + CT-rich Low_complexity Low_complexity 1 71 0 1563 141 0 47 chr13 99194119 99194395 -20550503 - AluJo SINE Alu -25 287 25 1603 190 3 10 chr13 99194538 99194848 -20550050 - AluJo SINE Alu -4 308 1 1818 138 3 29 chr13 99194853 99195164 -20549734 - AluJb SINE Alu -9 303 1 964 177 34 17 chr13 99195169 99195344 -20549554 - MER20 DNA MER1_type 0 219 42 255 316 105 46 chr13 99195383 99195535 -20549363 - LTR33 LTR ERVL -116 405 245 336 277 54 0 chr13 99195577 99195689 -20549209 - LTR33 LTR ERVL -403 118 1 631 234 70 13 chr13 99195758 99195916 -20548982 + MER46C DNA MER2_type 168 334 -4 355 245 56 16 chr13 99195924 99196051 -20548847 - L1P LINE L1 -1127 5019 4882 1975 115 0 28 chr13 99196196 99196513 -20548385 - AluSx SINE Alu 0 311 3 427 185 179 26 chr13 99196514 99196665 -20548233 + L1MC4 LINE L1 7868 8041 -1 321 186 17 17 chr13 99197056 99197115 -20547783 + MER69 DNA AcHobo 1 59 -118 247 200 0 0 chr13 99197276 99197336 -20547562 + MER69 DNA AcHobo 2388 2447 -79 1653 160 28 7 chr13 99197402 99197690 -20547208 - AluJb SINE Alu -18 294 1 527 297 81 16 chr13 99197690 99198121 -20546777 - L1M4 LINE L1 -1490 4656 4198 1870 142 3 3 chr13 99198122 99198410 -20546488 - AluSx SINE Alu -13 299 12 1441 172 15 4 chr13 99198511 99198801 -20546097 - AluJo SINE Alu 0 305 13 969 302 47 44 chr13 99198806 99199399 -20545499 - L1M4 LINE L1 -1944 4202 3608 1692 150 28 11 chr13 99199413 99199699 -20545199 + AluSx SINE Alu 1 291 -21 2032 134 0 10 chr13 99199899 99200212 -20544686 - AluSx SINE Alu 0 312 3 23 0 0 0 chr13 99200243 99200266 -20544632 + AT_rich Low_complexity Low_complexity 1 23 0 1027 107 33 0 chr13 99200266 99200416 -20544482 - AluSq SINE Alu -24 289 135 2237 99 0 7 chr13 99200979 99201281 -20543617 - AluSg SINE Alu -10 300 1 1761 151 0 36 chr13 99201319 99201623 -20543275 + AluJo SINE Alu 1 293 -19 1690 148 21 18 chr13 99202220 99202541 -20542357 - AluSx SINE Alu 0 322 1 1435 195 18 48 chr13 99203299 99203633 -20541265 - L1MA10 LINE L1 -4 6330 6007 1949 124 10 0 chr13 99203656 99203947 -20540951 - AluJb SINE Alu -16 296 3 25 31 0 0 chr13 99204533 99204565 -20540333 + AT_rich Low_complexity Low_complexity 1 32 0 1742 140 0 52 chr13 99204865 99205173 -20539725 + AluJb SINE Alu 1 292 -20 1927 117 23 30 chr13 99205181 99205480 -20539418 + AluSx SINE Alu 2 298 -14 931 140 0 0 chr13 99205637 99205773 -20539125 - AluJb SINE Alu -176 136 1 1530 174 7 14 chr13 99205774 99206067 -20538831 - L1MB3 LINE L1 -41 6142 5852 30 27 0 0 chr13 99206091 99206128 -20538770 + AT_rich Low_complexity Low_complexity 1 37 0 808 177 69 23 chr13 99206128 99206303 -20538595 + AluJb SINE Alu 129 311 -1 186 43 0 0 chr13 99206402 99206425 -20538473 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1020 128 0 0 chr13 99206429 99206578 -20538320 - AluSg/x SINE Alu -27 285 137 2079 89 55 0 chr13 99206578 99206869 -20538029 - AluSx SINE Alu -5 307 1 2049 134 0 3 chr13 99207098 99207411 -20537487 - AluSx SINE Alu 0 312 1 1204 199 77 82 chr13 99208043 99208419 -20536479 + MLT1A2 LTR MaLR 1 374 0 1894 134 0 28 chr13 99208438 99208759 -20536139 + AluSx SINE Alu 1 312 0 569 111 141 20 chr13 99210267 99210366 -20534532 + FLAM_C SINE Alu 1 111 -32 2580 127 28 24 chr13 99210533 99210958 -20533940 + MSTA LTR MaLR 2 428 0 2100 119 3 0 chr13 99211390 99211692 -20533206 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr13 99211917 99211938 -20532960 + AT_rich Low_complexity Low_complexity 1 21 0 1302 161 5 0 chr13 99211942 99212160 -20532738 + AluSx SINE Alu 1 219 -93 2024 125 3 0 chr13 99212379 99212675 -20532223 - AluSx SINE Alu -15 297 1 2562 166 73 86 chr13 99212856 99213275 -20531623 + LTR49 LTR ERV1 1 424 -171 1629 131 18 122 chr13 99213275 99213403 -20531495 + AluJo SINE Alu 1 141 -161 629 109 0 10 chr13 99213403 99213504 -20531394 + (TA)n Simple_repeat Simple_repeat 2 101 0 1629 131 18 122 chr13 99213504 99213712 -20531186 + AluJo SINE Alu 141 302 0 1012 175 0 0 chr13 99213719 99213873 -20531025 + FRAM SINE Alu 1 154 -12 2562 166 73 86 chr13 99213873 99214061 -20530837 + LTR49 LTR ERV1 430 593 -2 2161 112 0 0 chr13 99214289 99214585 -20530313 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr13 99214659 99214680 -20530218 + AT_rich Low_complexity Low_complexity 1 21 0 1585 158 4 4 chr13 99214681 99214940 -20529958 - AluJo SINE Alu -25 287 29 2123 117 0 0 chr13 99215026 99215333 -20529565 + AluSx SINE Alu 1 307 -5 2152 118 0 0 chr13 99215507 99215804 -20529094 - AluSx SINE Alu -15 297 1 523 129 11 0 chr13 99215812 99215905 -20528993 - L1PA13 LINE L1 -2 6161 6068 252 275 9 46 chr13 99215914 99216023 -20528875 - L2 LINE L2 -683 2631 2527 1249 119 0 2 chr13 99216045 99216293 -20528605 + AluSg SINE Alu 1 302 -8 446 258 33 40 chr13 99216307 99216458 -20528440 - L2 LINE L2 -1560 1754 1605 2047 124 0 7 chr13 99216476 99216775 -20528123 - AluSx SINE Alu -15 297 1 1006 264 62 14 chr13 99217178 99217470 -20527428 + MLT1I LTR MaLR 104 409 0 762 117 62 16 chr13 99218034 99218162 -20526736 + FLAM_C SINE Alu 5 138 -5 293 177 16 0 chr13 99218238 99218300 -20526598 - FAM SINE Alu -1 178 116 1729 105 4 4 chr13 99218406 99218653 -20526245 - AluSq SINE Alu -66 247 1 872 189 41 128 chr13 99219048 99219291 -20525607 + LTR48B LTR ERV1 1 222 -422 758 88 0 9 chr13 99219312 99219425 -20525473 + (TTTCC)n Simple_repeat Simple_repeat 4 115 0 1316 209 14 14 chr13 99219426 99219766 -20525132 - AluJb SINE Alu 0 340 1 1295 189 17 34 chr13 99219920 99220208 -20524690 + LTR29 LTR ERV1 348 653 0 1481 176 72 79 chr13 99220622 99220748 -20524150 + MLT1C LTR MaLR 1 126 -341 2530 118 11 92 chr13 99220748 99220803 -20524095 + MSTA LTR MaLR 1 59 -369 2131 121 0 0 chr13 99220803 99221100 -20523798 + AluSg SINE Alu 1 297 -13 2530 118 11 92 chr13 99221100 99221441 -20523457 + MSTA LTR MaLR 59 356 -72 2017 139 0 0 chr13 99221441 99221736 -20523162 + AluSx SINE Alu 1 295 -17 2530 118 11 92 chr13 99221736 99221804 -20523094 + MSTA LTR MaLR 356 428 0 1481 176 72 79 chr13 99221804 99222080 -20522818 + MLT1C LTR MaLR 126 400 -67 1220 172 0 18 chr13 99222086 99222307 -20522591 - AluJb SINE Alu -15 297 81 300 177 0 16 chr13 99222307 99222369 -20522529 + MLT1C LTR MaLR 445 505 0 979 303 134 29 chr13 99222825 99223237 -20521661 - L2 LINE L2 -1931 1383 1016 2284 94 0 7 chr13 99223237 99223545 -20521353 + AluSc SINE Alu 3 308 -1 979 303 134 29 chr13 99223545 99223931 -20520967 - L2 LINE L2 -2298 1016 501 789 186 35 0 chr13 99223931 99224076 -20520822 + AluJ SINE Alu 2 151 -161 254 87 0 243 chr13 99224153 99224256 -20520642 + MLT1C LTR MaLR 159 236 -231 1002 143 0 0 chr13 99224259 99224413 -20520485 + AluJ SINE Alu 149 302 -10 185 321 163 18 chr13 99224420 99224697 -20520201 - L2 LINE L2 -2808 506 190 4067 171 51 9 chr13 99225155 99225935 -20518963 + L1MB1 LINE L1 5356 6168 0 1957 122 11 67 chr13 99225948 99226309 -20518589 + L1MB3 LINE L1 5836 6176 -7 180 0 0 0 chr13 99226320 99226340 -20518558 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 763 185 0 15 chr13 99226899 99227034 -20517864 + FLAM_C SINE Alu 1 133 0 369 0 0 0 chr13 99227092 99227133 -20517765 + (CA)n Simple_repeat Simple_repeat 2 42 0 955 141 65 20 chr13 99227139 99227338 -20517560 + L1MB1 LINE L1 5961 6168 0 934 78 0 8 chr13 99227351 99227480 -20517418 + L1MB3 LINE L1 5836 5963 -220 24 24 0 24 chr13 99227480 99227500 -20517398 + AT_rich Low_complexity Low_complexity 1 20 -21 1936 126 3 3 chr13 99227500 99227785 -20517113 - AluSq SINE Alu -28 285 1 24 24 0 24 chr13 99227785 99227806 -20517092 + AT_rich Low_complexity Low_complexity 20 41 0 1428 194 63 169 chr13 99227997 99228176 -20516722 - LTR8A LTR ERV1 0 727 530 2100 127 3 0 chr13 99228176 99228476 -20516422 - AluSx SINE Alu -11 301 1 1428 194 63 169 chr13 99228476 99229110 -20515788 - LTR8A LTR ERV1 -197 530 1 2146 96 7 3 chr13 99229719 99230022 -20514876 + AluSp SINE Alu 2 305 -8 400 209 35 0 chr13 99230027 99230113 -20514785 - LTR19C LTR ERV1 -683 96 8 2705 105 50 0 chr13 99230217 99230229 -20514669 - MER1A DNA MER1_type -2295 407 397 1979 147 0 6 chr13 99230229 99230543 -20514355 + AluSx SINE Alu 1 312 0 2705 105 50 0 chr13 99230543 99230910 -20513988 - MER1A DNA MER1_type -2305 397 9 271 195 12 98 chr13 99230924 99231006 -20513892 - LTR50 LTR ERVL -714 81 7 1043 88 0 88 chr13 99231083 99231137 -20513761 - L1MB3 LINE L1 -2 6181 6124 589 164 164 0 chr13 99231137 99231247 -20513651 - FLAM_A SINE Alu -5 128 1 1043 88 0 88 chr13 99231247 99231384 -20513514 - L1MB3 LINE L1 -59 6124 6007 1667 183 0 3 chr13 99231442 99231760 -20513138 - AluSx SINE Alu 0 312 1 1619 295 80 17 chr13 99231835 99232115 -20512783 - ERVL LTR ERVL -351 5413 5152 1739 146 62 0 chr13 99232115 99232390 -20512508 + AluSx SINE Alu 1 292 -20 1619 295 80 17 chr13 99232390 99232613 -20512285 - ERVL LTR ERVL -612 5152 4944 1794 176 0 16 chr13 99232613 99232926 -20511972 + AluJo SINE Alu 1 308 -4 1619 295 80 17 chr13 99232926 99233075 -20511823 - ERVL LTR ERVL -820 4944 4719 806 152 15 15 chr13 99233250 99233382 -20511516 + FLAM_C SINE Alu 2 133 0 2003 99 39 0 chr13 99233410 99233694 -20511204 + AluSx SINE Alu 1 295 -17 1148 210 148 24 chr13 99233763 99234165 -20510733 + MER66A LTR ERV1 99 478 0 1890 114 43 4 chr13 99234200 99234480 -20510418 + AluSx SINE Alu 1 291 -21 35 0 0 0 chr13 99234633 99234668 -20510230 + AT_rich Low_complexity Low_complexity 1 35 0 1959 114 7 0 chr13 99234728 99235028 -20509870 - AluSg SINE Alu 0 302 1 2052 113 0 3 chr13 99235053 99235344 -20509554 - AluSx SINE Alu -22 290 1 239 244 160 39 chr13 99235754 99235910 -20508988 - LTR33A LTR ERVL -46 477 303 180 0 0 0 chr13 99236575 99236595 -20508303 + (A)n Simple_repeat Simple_repeat 1 20 0 1403 163 20 34 chr13 99236599 99236894 -20508004 + AluJo SINE Alu 1 291 -21 1828 175 0 0 chr13 99236939 99237247 -20507651 + AluJb SINE Alu 3 310 -2 1790 115 30 23 chr13 99237367 99237672 -20507226 - L1PB3 LINE L1 -255 5899 5593 361 228 7 0 chr13 99237839 99237927 -20506971 - AluS SINE Alu -236 67 1 2176 95 3 23 chr13 99237938 99238244 -20506654 + AluSp SINE Alu 1 300 -13 4629 160 9 14 chr13 99238249 99239372 -20505526 - L1P5 LINE L1 -587 5567 4450 804 262 119 67 chr13 99239389 99239836 -20505062 - L2 LINE L2 0 3313 2844 1813 167 30 47 chr13 99239858 99240143 -20504755 + L1MB8 LINE L1 5784 6061 -117 1793 150 0 26 chr13 99240143 99240450 -20504448 + AluJo SINE Alu 1 299 -13 1813 167 30 47 chr13 99240450 99240566 -20504332 + L1MB8 LINE L1 6061 6178 0 242 250 18 0 chr13 99240641 99240697 -20504201 - LTR16B LTR ERVL 0 464 408 961 95 0 0 chr13 99240697 99240823 -20504075 + AluSg1 SINE Alu 1 126 -183 1598 73 0 5 chr13 99240826 99241030 -20503868 + AluY SINE Alu 2 204 -107 1003 216 153 28 chr13 99241161 99241563 -20503335 - MER66A LTR ERV1 0 478 99 2147 93 17 0 chr13 99241632 99241923 -20502975 - AluSq SINE Alu -17 296 1 806 152 15 15 chr13 99241951 99242083 -20502815 - FLAM_C SINE Alu 0 133 2 674 258 86 14 chr13 99242258 99242407 -20502491 + ERVL LTR ERVL 4719 4891 -873 1730 181 0 19 chr13 99242407 99242721 -20502177 - AluJo SINE Alu -4 308 1 674 258 86 14 chr13 99242721 99242792 -20502106 + ERVL LTR ERVL 4891 4955 -809 1821 131 62 0 chr13 99242944 99243219 -20501679 - AluSx SINE Alu -20 292 1 243 213 61 102 chr13 99243677 99243874 -20501024 + L1MEd LINE L1 4 192 -5927 426 215 39 31 chr13 99244331 99244461 -20500437 + AluSg/x SINE Alu 172 302 -7 1863 163 0 10 chr13 99244464 99244771 -20500127 + AluJb SINE Alu 1 304 -8 235 300 52 136 chr13 99245548 99245769 -20499129 - L2 LINE L2 -18 3254 3061 2609 199 24 47 chr13 99245769 99245898 -20499000 - MER70B LTR ERVL 0 578 447 1492 148 15 19 chr13 99245898 99246169 -20498729 - AluSx SINE Alu -9 303 34 2609 199 24 47 chr13 99246169 99246631 -20498267 - MER70B LTR ERVL -131 447 1 235 300 52 136 chr13 99246631 99246696 -20498202 - L2 LINE L2 -211 3061 2992 2126 155 62 30 chr13 99246994 99247395 -20497503 + LTR53 LTR ERVL 1 414 -105 1659 111 0 76 chr13 99247500 99247788 -20497110 - AluSq SINE Alu -47 266 1 1107 259 59 27 chr13 99248082 99248181 -20496717 + LTR16A LTR ERVL 59 153 -297 2102 184 14 14 chr13 99248181 99248546 -20496352 - MLT1A1 LTR MaLR 0 365 1 1107 259 59 27 chr13 99248546 99248821 -20496077 + LTR16A LTR ERVL 153 445 -5 864 135 0 0 chr13 99248841 99248967 -20495931 + FLAM_C SINE Alu 1 126 -17 2210 87 0 7 chr13 99249357 99249655 -20495243 - AluSq SINE Alu -17 296 1 239 257 158 69 chr13 99250000 99250101 -20494797 + MER58B DNA MER1_type 2 111 -230 2147 115 0 0 chr13 99250297 99250593 -20494305 - AluSx SINE Alu -16 296 1 696 164 66 8 chr13 99250821 99250974 -20493924 - LTR49 LTR ERV1 -2 593 476 23 33 0 0 chr13 99250975 99251005 -20493893 + AT_rich Low_complexity Low_complexity 1 30 0 1012 175 0 0 chr13 99251009 99251163 -20493735 - AluJo/FRAM SINE Alu -12 290 137 1985 136 3 0 chr13 99251166 99251468 -20493430 - AluSx SINE Alu -6 306 4 1190 194 31 0 chr13 99251473 99251700 -20493198 + MER58B DNA MER1_type 78 311 -30 458 222 0 0 chr13 99251736 99251826 -20493072 + MER5A DNA MER1_type 16 105 -84 366 256 128 46 chr13 99252106 99252410 -20492488 + MER115 DNA AcHobo 299 660 -33 589 299 11 22 chr13 99252432 99252616 -20492282 + MER5A DNA MER1_type 2 183 -6 2603 106 20 6 chr13 99252911 99253269 -20491629 + THE1B LTR MaLR 2 364 0 410 272 58 0 chr13 99253411 99253514 -20491384 + MIR SINE MIR 39 147 -115 2064 119 0 3 chr13 99253846 99254140 -20490758 - AluSg SINE Alu -17 293 1 619 231 28 50 chr13 99254744 99254864 -20490034 + MER5B DNA MER1_type 1 117 -61 1790 140 3 17 chr13 99254864 99255185 -20489713 - AluSx SINE Alu 0 312 1 619 231 28 50 chr13 99255185 99255246 -20489652 + MER5B DNA MER1_type 117 178 0 246 198 185 12 chr13 99255434 99255515 -20489383 - MER5A DNA MER1_type -77 112 18 2290 201 29 38 chr13 99255603 99256154 -20488744 + MER74A LTR ERVL 1 546 -12 2149 174 5 14 chr13 99256616 99256984 -20487914 + MLT1A1 LTR MaLR 1 365 0 269 276 43 74 chr13 99256984 99257147 -20487751 + L2 LINE L2 2248 2405 -909 501 121 0 0 chr13 99257340 99257423 -20487475 + (GA)n Simple_repeat Simple_repeat 2 84 0 3720 103 6 35 chr13 99258606 99259149 -20485749 + MER1A DNA MER1_type 1 527 0 572 257 29 29 chr13 99259299 99259470 -20485428 + MER5A DNA MER1_type 1 171 -18 1177 83 0 0 chr13 99259689 99259845 -20485053 - L1PA10 LINE L1 0 6168 6013 1777 167 3 0 chr13 99259929 99260228 -20484670 - AluJo SINE Alu -10 302 3 906 141 81 0 chr13 99260510 99260659 -20484239 - AluSx SINE Alu -151 161 1 1378 139 6 111 chr13 99260973 99261305 -20483593 + AluJo SINE Alu 1 297 -15 2137 107 3 0 chr13 99261310 99261608 -20483290 + AluSx SINE Alu 6 304 -8 1724 87 0 4 chr13 99261734 99261963 -20482935 + AluSg SINE Alu 6 233 -77 387 0 0 0 chr13 99261974 99262017 -20482881 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 769 167 8 0 chr13 99262036 99262156 -20482742 - FLAM_C SINE Alu -21 122 2 874 139 109 0 chr13 99262563 99262728 -20482170 - AluSc SINE Alu 0 309 127 1403 225 80 37 chr13 99262856 99263292 -20481606 + MER50 LTR ERV1 280 734 0 262 135 0 0 chr13 99263292 99263329 -20481569 + LTR8 LTR ERV1 655 691 0 2254 99 3 0 chr13 99263369 99263681 -20481217 + AluSp SINE Alu 1 313 0 2204 103 0 3 chr13 99263697 99263997 -20480901 + AluSq SINE Alu 1 299 -14 1762 108 4 15 chr13 99264174 99264443 -20480455 + AluSp SINE Alu 1 266 -47 435 240 124 8 chr13 99264462 99264583 -20480315 + L2 LINE L2 3179 3313 0 3326 197 8 19 chr13 99264600 99265347 -20479551 + L1 LINE L1 4450 5188 -958 678 175 24 8 chr13 99266665 99266791 -20478107 - FLAM_C SINE Alu -14 129 2 1618 206 0 3 chr13 99267012 99267318 -20477580 - AluJb SINE Alu -4 308 4 204 259 267 17 chr13 99268083 99268199 -20476699 - MIR SINE MIR -72 190 46 2123 128 0 0 chr13 99268593 99268905 -20475993 + AluSx SINE Alu 1 312 0 1168 144 0 0 chr13 99268932 99269113 -20475785 + AluSg/x SINE Alu 127 307 -3 729 190 0 29 chr13 99269285 99269422 -20475476 + FLAM_C SINE Alu 1 133 0 2173 102 0 19 chr13 99269600 99269738 -20475160 + AluSq SINE Alu 1 140 -173 2267 87 3 0 chr13 99269738 99270037 -20474861 + AluSp SINE Alu 1 300 -13 2173 102 0 19 chr13 99270037 99270212 -20474686 + AluSq SINE Alu 140 308 -5 2243 113 36 33 chr13 99270254 99270617 -20474281 - THE1B LTR MaLR 0 364 1 494 16 16 0 chr13 99270646 99270709 -20474189 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 1569 186 24 14 chr13 99270710 99271001 -20473897 - AluJb SINE Alu -18 294 1 1190 262 57 78 chr13 99271012 99271843 -20473055 + L1MEd LINE L1 466 1179 -4940 1423 224 0 10 chr13 99271843 99272151 -20472747 + AluJb SINE Alu 2 306 -6 1190 262 57 78 chr13 99272151 99272224 -20472674 + L1MEd LINE L1 1179 1252 -4867 2383 84 3 0 chr13 99272260 99272570 -20472328 + AluSp SINE Alu 1 311 -2 207 0 0 0 chr13 99272575 99272598 -20472300 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 295 312 0 36 chr13 99272614 99272707 -20472191 + HAL1 LINE L1 1502 1590 -917 2544 133 12 65 chr13 99272707 99273219 -20471679 - MER31A LTR ERV1 0 485 1 295 312 0 36 chr13 99273219 99273263 -20471635 + HAL1 LINE L1 1590 1634 -873 241 227 45 23 chr13 99273266 99273354 -20471544 - L1MC4 LINE L1 -1339 6703 6614 1524 211 0 0 chr13 99273385 99273670 -20471228 - AluJo SINE Alu -27 285 1 2277 93 3 0 chr13 99273963 99274263 -20470635 + AluSp SINE Alu 3 303 -10 10614 85 1 20 chr13 99274316 99276578 -20468320 - L1PA7 LINE L1 0 6154 3899 1957 150 38 41 chr13 99276717 99276876 -20468022 + MLT1A1 LTR MaLR 1 159 -206 1680 170 37 0 chr13 99276876 99277176 -20467722 + AluSx SINE Alu 1 311 -1 1957 150 38 41 chr13 99277176 99277382 -20467516 + MLT1A1 LTR MaLR 159 365 0 2019 106 13 13 chr13 99277511 99277813 -20467085 - AluY SINE Alu -7 304 3 2038 131 3 0 chr13 99277815 99278113 -20466785 - AluSx SINE Alu -13 299 1 400 209 35 0 chr13 99278229 99278315 -20466583 + LTR19C LTR ERV1 8 96 -683 2138 96 7 3 chr13 99278320 99278622 -20466276 - AluSp SINE Alu -9 304 2 218 301 49 81 chr13 99279846 99279969 -20464929 - L2 LINE L2 0 3272 3154 21 36 0 0 chr13 99280219 99280247 -20464651 + AT_rich Low_complexity Low_complexity 1 28 0 1297 174 42 0 chr13 99280304 99280540 -20464358 - AluJo SINE Alu -66 246 1 217 0 0 57 chr13 99280959 99280994 -20463904 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 1817 120 40 4 chr13 99281011 99281287 -20463611 - AluSx SINE Alu -26 286 1 647 93 31 10 chr13 99281514 99281611 -20463287 - AluS SINE Alu -213 100 2 1996 125 7 3 chr13 99281738 99282043 -20462855 - AluSx SINE Alu -6 306 1 299 193 36 93 chr13 99283188 99283328 -20461570 - LTR37A LTR ERV1 0 426 295 1683 169 3 17 chr13 99283381 99283676 -20461222 - AluJo SINE Alu -15 297 7 1130 149 33 66 chr13 99284246 99284366 -20460532 + AluJo SINE Alu 1 111 -201 1996 124 0 10 chr13 99284366 99284665 -20460233 - AluSx SINE Alu -16 296 1 1130 149 33 66 chr13 99284665 99284785 -20460113 + AluJo SINE Alu 111 233 -79 1614 126 132 35 chr13 99284785 99285127 -20459771 + THE1C LTR MaLR 1 375 0 6615 113 10 43 chr13 99285127 99286137 -20458761 + THE1C-int LTR MaLR 1 977 -603 2237 126 24 42 chr13 99286283 99286665 -20458233 + THE1C LTR MaLR 1 375 0 382 167 28 0 chr13 99286665 99286737 -20458161 + AluJo SINE Alu 229 302 0 557 291 184 34 chr13 99286749 99287130 -20457768 + MLT1H LTR MaLR 98 535 -14 201 228 0 89 chr13 99287945 99288024 -20456874 - L2 LINE L2 -904 2410 2339 917 219 9 18 chr13 99288234 99288462 -20456436 - AluJo SINE Alu 0 312 87 343 290 92 53 chr13 99288836 99289043 -20455855 + MIR SINE MIR 28 242 -20 274 384 29 0 chr13 99289578 99289716 -20455182 + L3 LINE CR1 668 809 -768 * 428 216 76 130 chr13 99289712 99289789 -20455109 - MIR SINE MIR -67 195 115 1704 161 6 28 chr13 99289789 99289922 -20454976 + AluJo SINE Alu 1 135 -177 2413 56 3 0 chr13 99289922 99290224 -20454674 + AluY SINE Alu 1 303 -8 1704 161 6 28 chr13 99290224 99290407 -20454491 + AluJo SINE Alu 135 310 -2 2192 112 3 0 chr13 99290413 99290716 -20454182 + AluSx SINE Alu 1 304 -8 428 216 76 130 chr13 99290716 99290816 -20454082 - MIR SINE MIR -152 110 21 1714 138 4 0 chr13 99290929 99291197 -20453701 + AluSx SINE Alu 5 273 -39 324 0 0 0 chr13 99291208 99291244 -20453654 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 387 246 22 44 chr13 99291588 99291771 -20453127 + (TG)n Simple_repeat Simple_repeat 2 180 0 1242 286 59 40 chr13 99292869 99293729 -20451169 - L1ME3A LINE L1 -219 5951 5068 1753 155 3 19 chr13 99293729 99294046 -20450852 + AluJb SINE Alu 1 312 0 1242 286 59 40 chr13 99294046 99294317 -20450581 - L1ME3A LINE L1 -1102 5068 4804 573 92 0 0 chr13 99294429 99294505 -20450393 + AluY SINE Alu 199 274 -37 1161 91 0 0 chr13 99294505 99294659 -20450239 - AluSg SINE Alu -122 188 35 310 88 0 13 chr13 99294747 99294962 -20449936 - AluSc SINE Alu -7 292 3 252 0 0 0 chr13 99294962 99294990 -20449908 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 204 259 267 17 chr13 99295248 99295364 -20449534 - MIR SINE MIR -72 190 46 2123 128 0 0 chr13 99295758 99296070 -20448828 + AluSx SINE Alu 1 312 0 1168 144 0 0 chr13 99296097 99296278 -20448620 + AluSg/x SINE Alu 127 307 -3 729 190 0 29 chr13 99296450 99296587 -20448311 + FLAM_C SINE Alu 1 133 0 2019 79 17 20 chr13 99296765 99296903 -20447995 + AluSq SINE Alu 1 138 -175 2281 84 3 0 chr13 99296903 99297202 -20447696 + AluSp SINE Alu 1 300 -13 2019 79 17 20 chr13 99297202 99297355 -20447543 + AluSq SINE Alu 138 291 -22 623 247 43 25 chr13 99297359 99297521 -20447377 + LTR35 LTR ERV1 454 618 0 1109 166 49 15 chr13 99297636 99297841 -20447057 + LTR26E LTR ERV1 1 212 -410 499 127 0 0 chr13 99297843 99297914 -20446984 + FLAM_A SINE Alu 40 110 -32 1714 157 20 29 chr13 99297941 99297974 -20446924 + LTR26B LTR ERV1 235 267 -264 2032 143 0 0 chr13 99297974 99298274 -20446624 - AluSx SINE Alu -12 300 1 1714 157 20 29 chr13 99298274 99298504 -20446394 + LTR26B LTR ERV1 267 429 -102 1806 154 136 18 chr13 99298504 99298887 -20446011 + MSTA LTR MaLR 1 428 0 1714 157 20 29 chr13 99298887 99298974 -20445924 + LTR26B LTR ERV1 429 515 -16 201 211 0 0 chr13 99299228 99299285 -20445613 + A-rich Low_complexity Low_complexity 1 57 0 1678 179 3 16 chr13 99299296 99299604 -20445294 + AluJo SINE Alu 1 304 -8 2092 108 20 0 chr13 99299649 99299946 -20444952 - AluSg SINE Alu -7 303 1 243 213 64 0 chr13 99299947 99299994 -20444904 + MIR SINE MIR 20 69 -193 1458 114 0 0 chr13 99299998 99300200 -20444698 + AluSq SINE Alu 4 205 -108 307 75 0 0 chr13 99300200 99300240 -20444658 + LTR8 LTR ERV1 618 657 -34 1872 227 121 52 chr13 99300247 99300925 -20443973 + MER50 LTR ERV1 10 734 0 262 135 0 0 chr13 99300925 99300962 -20443936 + LTR8 LTR ERV1 655 691 0 2237 103 3 0 chr13 99301002 99301314 -20443584 + AluSp SINE Alu 1 313 0 2204 103 0 3 chr13 99301330 99301630 -20443268 + AluSq SINE Alu 1 299 -14 1996 82 4 8 chr13 99301806 99302073 -20442825 + AluSp SINE Alu 1 266 -47 308 227 136 36 chr13 99302092 99302202 -20442696 + L2 LINE L2 3179 3299 -14 733 162 0 0 chr13 99302660 99302797 -20442101 - FLAM_A SINE Alu 0 142 6 826 136 0 0 chr13 99302917 99303042 -20441856 + FLAM_C SINE Alu 5 129 -14 33 25 0 0 chr13 99303042 99303082 -20441816 + AT_rich Low_complexity Low_complexity 1 40 0 454 211 220 0 chr13 99303216 99303325 -20441573 + FLAM_C SINE Alu 1 133 0 1557 168 10 40 chr13 99303456 99303754 -20441144 + AluJo SINE Alu 1 289 -23 2053 88 49 0 chr13 99303919 99304203 -20440695 + AluSg SINE Alu 12 309 -1 2161 138 16 174 chr13 99304571 99304736 -20440162 - LTR8 LTR ERV1 0 691 502 2085 109 0 17 chr13 99304736 99305064 -20439834 - AluY SINE Alu 0 311 1 2161 138 16 174 chr13 99305064 99305456 -20439442 - LTR8 LTR ERV1 -189 502 50 2121 113 0 3 chr13 99305456 99305749 -20439149 - AluSc SINE Alu -15 294 3 2161 138 16 174 chr13 99305749 99305861 -20439037 - LTR8 LTR ERV1 -641 50 -78 1688 226 56 77 chr13 99305861 99306486 -20438412 - LTR9 LTR ERV1 0 612 1 2161 138 16 174 chr13 99306486 99306586 -20438312 - LTR8 LTR ERV1 -769 4294967218 -192 1706 137 48 4 chr13 99306586 99306857 -20438041 + AluSx SINE Alu 1 283 -29 1154 116 72 6 chr13 99306857 99306881 -20438017 + AluSq SINE Alu 1 307 0 2209 109 0 6 chr13 99306884 99307196 -20437702 + AluSp SINE Alu 3 312 -1 2161 138 16 174 chr13 99307196 99307274 -20437624 - LTR8 LTR ERV1 -599 92 3 2431 189 52 33 chr13 99307432 99307976 -20436922 + MER41C LTR ERV1 1 554 0 1685 166 0 38 chr13 99308203 99308523 -20436375 + AluJo SINE Alu 1 308 -4 681 245 149 78 chr13 99308692 99308791 -20436107 - MER34C LTR ERV1 -4 581 491 1135 203 122 11 chr13 99308791 99309062 -20435836 + AluJo SINE Alu 2 302 0 681 245 149 78 chr13 99309062 99309504 -20435394 - MER34C LTR ERV1 -94 491 1 339 161 0 149 chr13 99309867 99309954 -20434944 - LTR8A LTR ERV1 0 727 654 387 110 82 68 chr13 99309954 99309976 -20434922 + AluJ/FLAM SINE Alu 1 21 -281 4249 130 18 50 chr13 99309976 99310690 -20434208 + LTR8 LTR ERV1 1 691 0 387 110 82 68 chr13 99310690 99310740 -20434158 + AluJ/FLAM SINE Alu 21 74 -228 1391 119 9 31 chr13 99310744 99310970 -20433928 - MER50 LTR ERV1 -29 705 485 975 247 211 11 chr13 99311008 99311377 -20433521 + LTR1B LTR ERV1 56 498 -328 1988 111 10 10 chr13 99311381 99311678 -20433220 + AluY SINE Alu 1 297 -14 1163 198 77 45 chr13 99311682 99311951 -20432947 - L1MC4a LINE L1 -404 7404 7122 1380 161 189 0 chr13 99311951 99312199 -20432699 - AluJb SINE Alu -7 295 1 1163 198 77 45 chr13 99312199 99312242 -20432656 - L1MC4a LINE L1 -686 7122 7082 435 288 68 59 chr13 99313541 99313692 -20431206 + L2 LINE L2 2499 2654 -660 1042 192 4 48 chr13 99313692 99313754 -20431144 + MER20 DNA MER1_type 1 64 -155 1623 167 3 52 chr13 99313754 99314078 -20430820 - AluJo SINE Alu -4 308 1 1042 192 4 48 chr13 99314078 99314244 -20430654 + MER20 DNA MER1_type 64 219 0 435 288 68 59 chr13 99314244 99314328 -20430570 + L2 LINE L2 2654 2736 -578 3023 144 166 21 chr13 99314328 99314537 -20430361 + LTR48 LTR ERV1 1 178 -609 2062 113 3 0 chr13 99314537 99314837 -20430061 + AluSq SINE Alu 10 310 -3 3023 144 166 21 chr13 99314837 99315288 -20429610 + LTR48 LTR ERV1 178 757 -30 755 196 0 14 chr13 99315321 99315459 -20429439 + FLAM_C SINE Alu 2 137 -6 3962 109 17 56 chr13 99315487 99316147 -20428751 + MER41B LTR ERV1 1 634 -1 264 247 147 91 chr13 99316471 99316702 -20428196 + MLT1H1 LTR MaLR 302 545 -10 7643 27 0 0 chr13 99316712 99317840 -20427058 - L1PA3 LINE L1 0 6155 5072 1717 134 46 11 chr13 99317840 99318124 -20426774 - AluSx SINE Alu -18 294 1 2342 93 0 0 chr13 99318138 99318449 -20426449 - AluY SINE Alu 0 311 1 290 156 10 71 chr13 99318766 99318840 -20426058 + AluJo SINE Alu 83 136 -166 2359 74 7 0 chr13 99319713 99320011 -20424887 + AluSx SINE Alu 5 304 -8 500 245 92 37 chr13 99320731 99320823 -20424075 + MER5A DNA MER1_type 18 103 -86 2162 106 3 0 chr13 99320823 99321115 -20423783 - AluSx SINE Alu -14 298 6 500 245 92 37 chr13 99321115 99321185 -20423713 + MER5A DNA MER1_type 103 189 0 1370 178 93 0 chr13 99321216 99321486 -20423412 + AluJb SINE Alu 1 295 -17 749 103 19 0 chr13 99321508 99321615 -20423283 + AluY SINE Alu 187 295 -16 727 184 8 16 chr13 99321633 99321758 -20423140 + FLAM_C SINE Alu 1 124 -9 1706 118 66 40 chr13 99322075 99322379 -20422519 + AluSx SINE Alu 1 312 0 756 175 8 0 chr13 99322852 99322972 -20421926 + FLAM_C SINE Alu 2 122 -21 252 0 0 0 chr13 99322975 99323003 -20421895 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 1724 92 0 4 chr13 99323030 99323259 -20421639 - AluSg SINE Alu -77 233 6 2076 132 0 0 chr13 99323387 99323691 -20421207 - AluSx SINE Alu -8 304 1 239 351 37 52 chr13 99323881 99324015 -20420883 - MIR SINE MIR -109 153 22 1759 132 3 42 chr13 99324229 99324374 -20420524 + AluSx SINE Alu 1 150 -162 2199 101 7 0 chr13 99324374 99324680 -20420218 + AluSx SINE Alu 1 308 -4 1759 132 3 42 chr13 99324680 99324896 -20420002 + AluSx SINE Alu 150 312 0 1934 128 7 3 chr13 99325028 99325333 -20419565 + AluSx SINE Alu 1 306 -6 28 29 0 0 chr13 99325844 99325879 -20419019 + AT_rich Low_complexity Low_complexity 1 35 0 892 124 0 8 chr13 99325879 99326008 -20418890 - FLAM_C SINE Alu -5 128 1 915 193 135 5 chr13 99326275 99326467 -20418431 - MER20 DNA MER1_type 0 219 3 2221 100 0 7 chr13 99326577 99326886 -20418012 + AluSx SINE Alu 1 307 -5 390 299 75 33 chr13 99326983 99327060 -20417838 - MIR SINE MIR -1 261 189 1865 117 7 7 chr13 99327060 99327341 -20417557 + AluSg SINE Alu 1 281 -29 249 33 0 0 chr13 99327344 99327374 -20417524 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 390 299 75 33 chr13 99327374 99327506 -20417392 - MIR SINE MIR -74 188 39 1732 145 3 52 chr13 99327893 99328217 -20416681 + AluSx SINE Alu 5 312 0 335 320 56 43 chr13 99328382 99328616 -20416282 + MIR SINE MIR 20 256 -6 192 77 0 0 chr13 99329387 99329413 -20415485 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2213 92 3 0 chr13 99329421 99329716 -20415182 + AluSq SINE Alu 1 296 -17 21 0 0 0 chr13 99329747 99329768 -20415130 + AT_rich Low_complexity Low_complexity 1 21 0 686 207 0 0 chr13 99329778 99329894 -20415004 - AluJb SINE Alu -195 117 2 1802 154 3 3 chr13 99329897 99330195 -20414703 - AluJo SINE Alu -14 298 1 2027 129 0 0 chr13 99330552 99330855 -20414043 - AluSx SINE Alu -9 303 1 701 294 57 60 chr13 99331271 99331344 -20413554 - LTR67 LTR ERVL -13 544 472 2004 125 0 0 chr13 99331344 99331632 -20413266 + AluSx SINE Alu 6 293 -19 222 37 0 0 chr13 99331632 99331659 -20413239 + (TA)n Simple_repeat Simple_repeat 1 27 0 701 294 57 60 chr13 99331659 99331952 -20412946 - LTR67 LTR ERVL -83 474 178 637 129 0 0 chr13 99331952 99332045 -20412853 + HY4 scRNA scRNA 1 93 0 28 0 0 0 chr13 99332045 99332073 -20412825 + AT_rich Low_complexity Low_complexity 1 28 0 292 295 40 95 chr13 99332076 99332276 -20412622 - LTR67 LTR ERVL -367 190 2 1933 134 7 13 chr13 99332405 99332711 -20412187 + AluSq SINE Alu 1 304 -9 2080 113 20 0 chr13 99332711 99333002 -20411896 + AluSx SINE Alu 1 298 -14 1503 184 116 0 chr13 99333057 99333324 -20411574 - AluJb SINE Alu -3 299 2 709 90 0 98 chr13 99333383 99333479 -20411419 + L1MB4 LINE L1 6050 6131 -49 2224 94 7 0 chr13 99333479 99333777 -20411121 - AluSx SINE Alu -12 300 1 709 90 0 98 chr13 99333777 99333813 -20411085 + L1MB4 LINE L1 6131 6169 -11 742 253 98 10 chr13 99334066 99334260 -20410638 + MIR SINE MIR 52 262 0 1612 158 0 32 chr13 99334295 99334597 -20410301 + AluSx SINE Alu 14 306 0 2123 78 25 0 chr13 99334642 99334924 -20409974 + AluSx SINE Alu 11 299 -13 2289 78 0 3 chr13 99334926 99335221 -20409677 + AluY SINE Alu 3 296 -15 1427 259 131 36 chr13 99335227 99335253 -20409645 - MLT1E LTR MaLR -4 589 567 2707 183 4 44 chr13 99335253 99335771 -20409127 - MLT2B1 LTR ERVL 0 520 23 2216 92 3 0 chr13 99335771 99336066 -20408832 - AluSq SINE Alu -17 296 1 2707 183 4 44 chr13 99336066 99336089 -20408809 - MLT2B1 LTR ERVL -497 23 1 1427 259 131 36 chr13 99336089 99336557 -20408341 - MLT1E LTR MaLR -26 567 48 320 0 25 0 chr13 99336616 99336656 -20408242 + (TG)n Simple_repeat Simple_repeat 2 42 0 2075 105 0 0 chr13 99336656 99336942 -20407956 - AluSx SINE Alu -26 286 1 1869 167 0 0 chr13 99337157 99337462 -20407436 - AluJo SINE Alu -7 305 1 447 233 102 92 chr13 99337490 99337631 -20407267 + MLT1L LTR MaLR 83 228 -387 1989 124 0 7 chr13 99337631 99337922 -20406976 + AluSx SINE Alu 1 289 -23 447 233 102 92 chr13 99337922 99337986 -20406912 + MLT1L LTR MaLR 228 290 -325 348 196 9 28 chr13 99338010 99338117 -20406781 + CT-rich Low_complexity Low_complexity 1 105 0 375 244 141 15 chr13 99338117 99338252 -20406646 + MLT1L LTR MaLR 308 459 -156 186 318 121 0 chr13 99338384 99338450 -20406448 - MIR SINE MIR -110 152 79 1655 178 3 20 chr13 99338834 99339132 -20405766 - AluJb SINE Alu -18 294 2 1359 88 5 51 chr13 99339161 99339377 -20405521 + AluSx SINE Alu 10 215 -97 253 323 0 20 chr13 99339521 99339609 -20405289 + (TA)n Simple_repeat Simple_repeat 2 89 -9 1899 121 0 10 chr13 99339609 99339898 -20405000 - AluJb SINE Alu -26 286 1 253 323 0 20 chr13 99339898 99339908 -20404990 + (TA)n Simple_repeat Simple_repeat 89 98 0 328 194 48 0 chr13 99339911 99339973 -20404925 - MIR SINE MIR -75 187 123 185 309 143 24 chr13 99339945 99340071 -20404827 - MIR3 SINE MIR -57 151 11 * 2196 95 3 3 chr13 99340374 99340680 -20404218 - AluSc SINE Alu -2 307 2 1404 193 26 45 chr13 99341001 99341340 -20403558 - MER61B LTR ERV1 -1 424 1 2133 115 0 3 chr13 99341591 99341895 -20403003 + AluSx SINE Alu 2 304 -8 2096 131 0 0 chr13 99341903 99342215 -20402683 + AluSx SINE Alu 1 312 0 278 180 16 0 chr13 99342246 99342307 -20402591 + GA-rich Low_complexity Low_complexity 1 62 0 432 248 29 9 chr13 99342414 99342519 -20402379 + MER45 DNA AcHobo 1 107 -71 371 92 64 46 chr13 99342523 99342632 -20402266 + CT-rich Low_complexity Low_complexity 2 112 0 767 244 15 30 chr13 99342637 99342834 -20402064 - AluJo SINE Alu 0 312 119 2045 137 0 0 chr13 99342850 99343150 -20401748 - AluSx SINE Alu -12 300 1 301 211 0 0 chr13 99343152 99343204 -20401694 + MER45 DNA AcHobo 1530 1581 0 2137 93 7 0 chr13 99344074 99344365 -20400533 + AluSp SINE Alu 1 293 -20 1936 88 8 0 chr13 99344379 99344639 -20400259 + AluSg1 SINE Alu 1 262 -47 312 244 67 59 chr13 99344648 99344783 -20400115 - L1ME4a LINE L1 -23 6098 5963 2388 75 3 0 chr13 99344828 99345136 -20399762 + AluY SINE Alu 1 309 -2 2091 101 27 3 chr13 99345330 99345628 -20399270 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr13 99345704 99345734 -20399164 + AT_rich Low_complexity Low_complexity 1 30 0 1922 119 7 10 chr13 99345734 99346029 -20398869 - AluSx SINE Alu -18 294 1 1981 120 7 3 chr13 99346030 99346329 -20398569 - AluSp SINE Alu -13 300 1 1665 163 7 21 chr13 99346334 99346623 -20398275 - AluJb SINE Alu -25 287 3 2237 141 43 65 chr13 99346689 99346910 -20397988 - L1MA7 LINE L1 -14 6277 6053 1605 179 0 20 chr13 99346910 99347207 -20397691 - AluJo SINE Alu -21 291 1 2237 141 43 65 chr13 99347207 99347319 -20397579 - L1MA7 LINE L1 -238 6053 5940 2167 75 14 3 chr13 99347319 99347612 -20397286 - AluY SINE Alu -15 296 1 2237 141 43 65 chr13 99347612 99347739 -20397159 - L1MA7 LINE L1 -351 5940 5826 232 301 72 12 chr13 99348051 99348134 -20396764 + L2 LINE L2 3145 3232 -40 507 308 240 39 chr13 99348211 99348731 -20396167 - L3 LINE CR1 -8 1569 945 228 202 181 0 chr13 99348934 99349028 -20395870 + L2 LINE L2 2426 2536 -778 353 303 61 0 chr13 99349335 99349434 -20395464 - MIR SINE MIR -30 232 128 2187 115 0 6 chr13 99349442 99349756 -20395142 + AluSp SINE Alu 1 312 -1 422 192 13 0 chr13 99349756 99349834 -20395064 - LTR8A LTR ERV1 -646 81 3 2431 189 52 33 chr13 99349992 99350536 -20394362 + MER41C LTR ERV1 1 554 0 1685 166 0 38 chr13 99350763 99351083 -20393815 + AluJo SINE Alu 1 308 -4 669 247 147 77 chr13 99351252 99351351 -20393547 - MER34C LTR ERV1 -4 581 490 1143 204 126 11 chr13 99351351 99351621 -20393277 + AluJo SINE Alu 2 302 0 669 247 147 77 chr13 99351621 99352064 -20392834 - MER34C LTR ERV1 -95 490 1 339 161 0 149 chr13 99352427 99352514 -20392384 - LTR8A LTR ERV1 0 727 654 387 110 82 68 chr13 99352514 99352536 -20392362 + AluJ/FLAM SINE Alu 1 21 -281 4249 130 18 50 chr13 99352536 99353250 -20391648 + LTR8 LTR ERV1 1 691 0 387 110 82 68 chr13 99353250 99353300 -20391598 + AluJ/FLAM SINE Alu 21 74 -228 1391 119 9 31 chr13 99353304 99353530 -20391368 - MER50 LTR ERV1 -29 705 485 959 249 211 11 chr13 99353568 99353937 -20390961 + LTR1B LTR ERV1 56 498 -328 2004 108 10 10 chr13 99353941 99354238 -20390660 + AluY SINE Alu 1 297 -14 711 175 150 6 chr13 99354242 99354402 -20390496 - L1MC4a LINE L1 -404 7404 7222 180 107 18 36 chr13 99354504 99354560 -20390338 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 1978 225 40 33 chr13 99355369 99355920 -20388978 + MER74A LTR ERVL 1 555 -3 184 364 82 9 chr13 99356015 99356125 -20388773 - MIR SINE MIR -106 156 39 646 241 31 19 chr13 99356403 99356565 -20388333 - MIR SINE MIR -50 212 49 1924 146 3 0 chr13 99357134 99357436 -20387462 - AluJb SINE Alu -9 303 1 194 244 0 0 chr13 99357452 99357497 -20387401 - MIR SINE MIR -115 147 103 696 171 152 13 chr13 99357554 99357712 -20387186 - MER5A DNA MER1_type -6 183 4 1487 182 54 3 chr13 99357765 99358062 -20386836 + AluJo SINE Alu 1 312 0 269 303 61 0 chr13 99358195 99358294 -20386604 - L2 LINE L2 -1 3312 3208 1338 213 4 4 chr13 99358649 99358912 -20385986 - AluJb SINE Alu -49 263 1 2088 120 0 3 chr13 99359094 99359393 -20385505 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr13 99359423 99359445 -20385453 + AT_rich Low_complexity Low_complexity 1 22 0 499 127 0 0 chr13 99359453 99359524 -20385374 - FLAM_A SINE Alu -32 110 40 1109 166 49 15 chr13 99359526 99359731 -20385167 - LTR26E LTR ERV1 -410 212 1 242 191 0 0 chr13 99359846 99359888 -20385010 - LTR35 LTR ERV1 0 618 577 884 225 21 17 chr13 99410039 99410275 -20334623 + AluJo SINE Alu 75 311 -1 556 296 62 53 chr13 99410349 99410592 -20334306 + MIR SINE MIR 18 262 0 21 0 0 0 chr13 99410861 99410882 -20334016 + AT_rich Low_complexity Low_complexity 1 21 0 428 279 64 7 chr13 99412106 99412246 -20332652 - MIR SINE MIR -89 173 26 1809 183 3 3 chr13 99413078 99413384 -20331514 - AluJo SINE Alu -6 306 1 348 328 32 18 chr13 99415447 99415601 -20329297 + MIR SINE MIR 20 172 -62 2210 120 3 0 chr13 99415829 99416130 -20328768 + AluSx SINE Alu 1 302 -10 2170 97 20 10 chr13 99416826 99417126 -20327772 + AluSq SINE Alu 1 303 -10 299 207 4 0 chr13 99417132 99417197 -20327701 + L1ME LINE L1 5490 5543 -578 1762 116 8 0 chr13 99418819 99419061 -20325837 - AluSx SINE Alu -10 302 59 308 332 61 43 chr13 99419165 99419511 -20325387 + L2 LINE L2 1745 2096 -1218 3458 220 80 22 chr13 99420298 99421557 -20323341 - L1ME2 LINE L1 -10 6154 4824 1907 119 24 44 chr13 99421582 99421877 -20323021 + AluSg SINE Alu 1 289 -21 2135 96 27 3 chr13 99422200 99422492 -20322406 + AluY SINE Alu 3 301 -10 186 71 0 0 chr13 99424522 99424550 -20320348 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2378 116 36 30 chr13 99425102 99425464 -20319434 - THE1B LTR MaLR 0 364 1 2000 142 0 19 chr13 99425816 99426132 -20318766 - AluSx SINE Alu -2 310 1 2674 268 68 57 chr13 99426178 99426757 -20318141 + HAL1 LINE L1 1 572 -1935 1488 115 5 0 chr13 99426757 99426992 -20317906 - AluSq SINE Alu 0 318 83 2674 268 68 57 chr13 99426992 99427642 -20317256 + HAL1 LINE L1 572 1245 -1262 307 168 11 137 chr13 99427728 99427788 -20317110 - MLT1I LTR MaLR -20 389 344 2037 149 3 0 chr13 99427788 99428089 -20316809 + AluSx SINE Alu 1 302 -10 307 168 11 137 chr13 99428089 99428123 -20316775 - MLT1I LTR MaLR -65 344 307 1393 139 25 4 chr13 99428136 99428413 -20316485 + L1M4 LINE L1 5200 5482 -696 2449 77 6 0 chr13 99428422 99428733 -20316165 + AluSp SINE Alu 1 313 0 1944 45 0 0 chr13 99428894 99429115 -20315783 - AluY SINE Alu -22 289 69 308 260 128 78 chr13 99431782 99432001 -20312897 + L1M2 LINE L1 836 1065 -5784 351 318 74 57 chr13 99433044 99433340 -20311558 - L3 LINE CR1 -1 1576 1276 1019 87 0 0 chr13 99433533 99433659 -20311239 + AluY SINE Alu 1 126 -185 333 200 158 11 chr13 99434373 99434468 -20310430 + MER5B DNA MER1_type 68 176 -2 28 0 0 0 chr13 99435284 99435312 -20309586 + AT_rich Low_complexity Low_complexity 1 28 0 750 191 0 0 chr13 99435698 99435813 -20309085 - FLAM_A SINE Alu -17 116 2 250 294 59 0 chr13 99436659 99436744 -20308154 + L2 LINE L2 3172 3261 -11 907 153 0 0 chr13 99437240 99437371 -20307527 + FLAM_C SINE Alu 3 133 0 281 321 29 7 chr13 99437408 99437545 -20307353 + HAL1 LINE L1 2209 2348 -159 22 56 0 0 chr13 99437625 99437661 -20307237 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 27 chr13 99437914 99437935 -20306963 + AT_rich Low_complexity Low_complexity 1 22 -14 909 158 0 8 chr13 99437935 99438068 -20306830 + FLAM_A SINE Alu 1 132 -1 26 0 0 27 chr13 99438068 99438083 -20306815 + AT_rich Low_complexity Low_complexity 22 36 0 685 253 53 0 chr13 99438283 99438453 -20306445 + MLT1B LTR MaLR 204 382 -8 2475 91 0 0 chr13 99439712 99440019 -20304879 - AluSg SINE Alu -3 307 1 216 234 104 0 chr13 99440178 99440255 -20304643 + L2 LINE L2 2368 2452 -862 546 310 53 28 chr13 99440413 99440881 -20304017 + L1ME3 LINE L1 4512 4991 -1155 1155 228 89 3 chr13 99441163 99441466 -20303432 + L1ME3 LINE L1 5470 5798 -372 406 245 93 61 chr13 99441780 99441975 -20302923 + L1ME3 LINE L1 5885 6089 -77 325 254 0 14 chr13 99442083 99442221 -20302677 + (CATA)n Simple_repeat Simple_repeat 3 138 0 563 276 105 0 chr13 99442531 99442712 -20302186 + MIR SINE MIR 42 241 -21 816 196 0 29 chr13 99443441 99443579 -20301319 + AluJo SINE Alu 2 135 -177 21 36 0 0 chr13 99444215 99444243 -20300655 + AT_rich Low_complexity Low_complexity 1 28 0 200 293 190 9 chr13 99445531 99445647 -20299251 + MIR3 SINE MIR 69 205 -3 222 108 108 0 chr13 99446692 99446729 -20298169 - L3 LINE CR1 -10 1567 1527 21 0 0 0 chr13 99447396 99447417 -20297481 + AT_rich Low_complexity Low_complexity 1 21 0 596 88 44 0 chr13 99448560 99448673 -20296225 + (TAGA)n Simple_repeat Simple_repeat 2 119 0 394 318 117 46 chr13 99450250 99450533 -20294365 + L2 LINE L2 2906 3208 -64 1707 180 44 3 chr13 99451062 99451357 -20293541 + AluJb SINE Alu 5 311 -1 550 307 96 4 chr13 99451968 99452238 -20292660 + LTR16A LTR ERVL 154 448 -2 2067 204 41 29 chr13 99454249 99454735 -20290163 - L1MB7 LINE L1 -8 6176 5685 1629 140 8 19 chr13 99455062 99455327 -20289571 - AluSx SINE Alu -8 304 43 2935 109 31 19 chr13 99455583 99456006 -20288892 + MSTA LTR MaLR 1 428 0 235 266 174 18 chr13 99456119 99456228 -20288670 + MIR SINE MIR 20 145 -63 1011 133 0 42 chr13 99457388 99457553 -20287345 - AluSg/x SINE Alu -21 289 132 336 24 0 0 chr13 99457553 99457594 -20287304 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1964 101 29 0 chr13 99457594 99457870 -20287028 - AluSx SINE Alu -28 284 1 513 0 0 0 chr13 99458711 99458768 -20286130 + (TG)n Simple_repeat Simple_repeat 1 57 0 228 100 0 0 chr13 99458768 99458808 -20286090 + (GA)n Simple_repeat Simple_repeat 2 41 0 1659 164 17 14 chr13 99458970 99459262 -20285636 - AluJo SINE Alu -19 293 1 280 185 0 31 chr13 99459300 99459365 -20285533 - MIR SINE MIR -49 213 151 750 208 130 36 chr13 99459365 99459673 -20285225 + MSTD LTR MaLR 1 396 0 325 202 274 24 chr13 99459673 99459798 -20285100 - MIR SINE MIR -70 138 5 439 134 24 0 chr13 99460310 99460392 -20284506 + L1PA16 LINE L1 6079 6162 -4 630 257 23 11 chr13 99461237 99461412 -20283486 - AluSg/x SINE Alu -9 300 124 2523 74 0 0 chr13 99461803 99462112 -20282786 + AluY SINE Alu 1 309 -2 540 226 19 31 chr13 99462641 99462800 -20282098 + MER103 DNA DNA 3 159 -7 1829 201 21 21 chr13 99462815 99463189 -20281709 - MLT1A2 LTR MaLR 0 374 1 735 233 84 14 chr13 99463276 99463491 -20281407 + MIR SINE MIR 32 261 -1 215 214 0 0 chr13 99464177 99464219 -20280679 + GA-rich Low_complexity Low_complexity 3 44 0 2135 129 3 0 chr13 99464733 99465035 -20279863 - AluJb SINE Alu -9 303 1 2471 156 21 14 chr13 99465053 99465471 -20279427 - L1MB2 LINE L1 -1 6170 5750 2310 110 0 0 chr13 99465600 99465901 -20278997 + AluSq SINE Alu 1 301 -12 1534 134 31 5 chr13 99466164 99466388 -20278510 + MER30 DNA MER1_type 1 230 0 628 275 74 87 chr13 99466419 99466866 -20278032 - L2 LINE L2 0 3272 2832 26 30 0 0 chr13 99467328 99467361 -20277537 + AT_rich Low_complexity Low_complexity 1 33 0 192 301 137 0 chr13 99468493 99468566 -20276332 + L2 LINE L2 3189 3271 -42 12793 57 4 0 chr13 99469956 99472270 -20272628 - L1PA6 LINE L1 0 6154 3834 1080 230 48 12 chr13 99473187 99473439 -20271459 + MIR SINE MIR 2 262 0 519 130 26 0 chr13 99473633 99473710 -20271188 + AluS SINE Alu 2 80 -232 750 169 70 64 chr13 99473895 99474067 -20270831 + AluJo SINE Alu 21 193 -119 475 273 101 62 chr13 99474581 99474790 -20270108 - MIR SINE MIR -26 236 20 302 229 181 24 chr13 99475423 99475506 -20269392 - MIR3 SINE MIR -14 194 99 2087 109 24 0 chr13 99475508 99475801 -20269097 - AluSp SINE Alu -11 302 3 365 313 42 42 chr13 99476206 99476398 -20268500 - MIR SINE MIR -65 197 6 229 143 0 24 chr13 99476717 99476759 -20268139 - MIR SINE MIR -90 118 78 647 178 40 20 chr13 99477612 99477673 -20267225 - LTR37A LTR ERV1 -51 375 317 578 89 13 0 chr13 99477673 99477752 -20267146 - MADE1 DNA Mariner 0 80 1 647 178 40 20 chr13 99477752 99477842 -20267056 - LTR37A LTR ERV1 -109 317 221 338 204 11 0 chr13 99477844 99477932 -20266966 + (TA)n Simple_repeat Simple_repeat 1 89 0 319 148 0 0 chr13 99477933 99477987 -20266911 - L1MA8 LINE L1 -237 6054 6001 879 280 42 21 chr13 99478241 99478627 -20266271 - L1PBa LINE L1 -6380 483 90 1791 161 46 20 chr13 99478799 99479069 -20265829 - L1MB3 LINE L1 0 6183 5901 2236 120 0 3 chr13 99479069 99479370 -20265528 - AluSx SINE Alu -12 300 1 1791 161 46 20 chr13 99479370 99479448 -20265450 - L1MB3 LINE L1 -282 5901 5826 469 147 39 176 chr13 99479454 99479658 -20265240 - L1MC5 LINE L1 -182 7779 7604 305 292 0 11 chr13 99480256 99480345 -20264553 - MIR3 SINE MIR -4 204 117 225 0 0 0 chr13 99480531 99480556 -20264342 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2202 99 0 7 chr13 99480556 99480848 -20264050 - AluSx SINE Alu -22 290 1 738 221 7 7 chr13 99480848 99480988 -20263910 - AluJo SINE Alu -171 141 2 23 86 0 0 chr13 99481225 99481283 -20263615 + AT_rich Low_complexity Low_complexity 1 58 0 311 125 0 16 chr13 99481688 99481752 -20263146 + (TC)n Simple_repeat Simple_repeat 2 64 0 2209 133 0 0 chr13 99482693 99482994 -20261904 - AluSx SINE Alu -11 301 1 2006 129 0 3 chr13 99483134 99483420 -20261478 - AluSx SINE Alu -27 285 1 290 309 123 25 chr13 99483700 99483943 -20260955 - L2 LINE L2 -947 2367 2101 3532 159 16 2 chr13 99484030 99484603 -20260295 + L1MB2 LINE L1 5584 6164 -7 2221 102 3 0 chr13 99484969 99485276 -20259622 - AluSx SINE Alu 0 309 2 28 0 0 0 chr13 99485276 99485304 -20259594 + AT_rich Low_complexity Low_complexity 1 28 0 853 177 8 0 chr13 99485304 99485434 -20259464 - FLAM_C SINE Alu -2 131 1 2192 92 51 0 chr13 99486344 99486637 -20258261 - AluSx SINE Alu -4 308 1 198 71 0 0 chr13 99486747 99486775 -20258123 + (TG)n Simple_repeat Simple_repeat 2 29 0 215 356 53 23 chr13 99487902 99488034 -20256864 + MIR SINE MIR 3 138 -124 939 186 30 69 chr13 99488100 99488225 -20256673 + AluJo SINE Alu 1 114 -198 2261 112 3 0 chr13 99488225 99488520 -20256378 - AluSp SINE Alu -17 296 1 939 186 30 69 chr13 99488520 99488625 -20256273 + AluJo SINE Alu 114 222 -90 551 227 84 79 chr13 99489523 99489726 -20255172 + MER63A DNA MER1_type 5 208 -2 21 57 0 0 chr13 99490371 99490406 -20254492 + AT_rich Low_complexity Low_complexity 1 35 0 1949 166 0 3 chr13 99491529 99491837 -20253061 + AluJb SINE Alu 3 309 -3 456 211 7 109 chr13 99491850 99491997 -20252901 - MER63 DNA MER1_type -302 760 3 734 297 112 41 chr13 99491999 99492547 -20252351 - L2 LINE L2 -221 3092 2504 1035 171 0 13 chr13 99492565 99492723 -20252175 - FAM SINE Alu -19 156 1 180 0 0 0 chr13 99492730 99492750 -20252148 + (TTG)n Simple_repeat Simple_repeat 3 22 0 1749 124 0 44 chr13 99492764 99493039 -20251859 - AluSx SINE Alu -6 306 44 207 214 143 0 chr13 99493323 99493379 -20251519 - L2 LINE L2 -171 3101 3038 1897 121 0 0 chr13 99493423 99493680 -20251218 + AluSx SINE Alu 50 306 -6 693 189 4 31 chr13 99494554 99494819 -20250079 + CT-rich Low_complexity Low_complexity 1 257 0 209 204 214 82 chr13 99494831 99494929 -20249969 - L2 LINE L2 -18 3254 3144 2170 122 0 3 chr13 99495236 99495532 -20249366 + AluSx SINE Alu 1 295 -17 944 130 7 0 chr13 99495945 99496083 -20248815 + AluSp/q SINE Alu 165 303 -10 757 281 22 13 chr13 99496151 99496379 -20248519 + MIR SINE MIR 33 262 0 2150 132 6 10 chr13 99496604 99496915 -20247983 + AluSx SINE Alu 1 310 -2 312 196 0 0 chr13 99497144 99497195 -20247703 + MIR SINE MIR 79 129 -133 250 292 50 25 chr13 99497288 99497408 -20247490 - MLT1J LTR MaLR 0 511 389 472 268 27 76 chr13 99497588 99497812 -20247086 - MIR SINE MIR -33 229 17 253 157 0 20 chr13 99498143 99498194 -20246704 + MER4-int LTR ERV1 1111 1160 -5438 24 0 0 0 chr13 99498439 99498463 -20246435 + AT_rich Low_complexity Low_complexity 1 24 0 2042 121 4 0 chr13 99498500 99498801 -20246097 - AluSq SINE Alu 0 304 3 2216 99 3 10 chr13 99499040 99499343 -20245555 - AluSx SINE Alu -11 301 1 469 266 101 18 chr13 99499858 99500027 -20244871 + MIR SINE MIR 39 221 -41 1088 24 79 0 chr13 99500247 99500373 -20244525 + MER85 DNA T2_type 1 136 -3 449 241 102 36 chr13 99504484 99504650 -20240248 + MER5B DNA MER1_type 2 178 0 1845 119 84 0 chr13 99505382 99505643 -20239255 + AluSx SINE Alu 1 283 -29 1049 159 0 17 chr13 99505780 99505956 -20238942 + FRAM SINE Alu 1 165 -11 197 65 32 0 chr13 99506045 99506076 -20238822 + (CA)n Simple_repeat Simple_repeat 2 33 0 3863 148 14 71 chr13 99506552 99507281 -20237617 + LTR8 LTR ERV1 1 687 -4 1988 111 44 0 chr13 99507352 99507654 -20237244 + AluSp SINE Alu 1 314 0 198 103 0 0 chr13 99507656 99507685 -20237213 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 348 24 0 0 chr13 99507684 99507725 -20237173 + (CA)n Simple_repeat Simple_repeat 2 42 0 221 238 148 30 chr13 99507925 99508026 -20236872 - MIR SINE MIR -80 182 70 22 0 0 0 chr13 99512165 99512187 -20232711 + AT_rich Low_complexity Low_complexity 1 22 0 333 68 0 0 chr13 99512257 99512301 -20232597 + (TG)n Simple_repeat Simple_repeat 2 45 0 189 320 0 0 chr13 99513027 99513077 -20231821 - MIR SINE MIR -120 88 39 438 271 166 11 chr13 99513952 99514133 -20230765 + MIR SINE MIR 47 255 -7 1280 235 55 0 chr13 99514365 99514654 -20230244 + MER7A DNA MER2_type 1 303 -43 1086 205 96 88 chr13 99514804 99514899 -20229999 + MLT1B LTR MaLR 1 94 -296 1932 123 3 3 chr13 99514899 99515191 -20229707 - AluSx SINE Alu -6 306 15 1086 205 96 88 chr13 99515191 99515480 -20229418 + MLT1B LTR MaLR 94 388 -2 1187 244 91 19 chr13 99516751 99517112 -20227786 + MER74B LTR ERVL 75 461 -161 2127 119 0 0 chr13 99517113 99517416 -20227482 - AluSg SINE Alu -7 303 1 338 296 65 97 chr13 99517551 99517872 -20227026 - L1ME LINE L1 -472 5649 5339 326 295 84 0 chr13 99518150 99518245 -20226653 + MIR SINE MIR 21 123 -139 365 39 20 0 chr13 99519248 99519299 -20225599 + (TG)n Simple_repeat Simple_repeat 2 53 0 351 0 0 0 chr13 99520514 99520553 -20224345 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1713 134 29 4 chr13 99520553 99520829 -20224069 - AluSx SINE Alu -29 283 1 228 304 128 14 chr13 99521991 99522139 -20222759 + MIR SINE MIR 20 184 -78 344 217 11 0 chr13 99522196 99522288 -20222610 + (CAT)n Simple_repeat Simple_repeat 3 95 0 2086 119 3 0 chr13 99522311 99522606 -20222292 - AluSx SINE Alu -16 296 1 3612 31 0 0 chr13 99522746 99523164 -20221734 - L1PA3 LINE L1 0 6155 5738 483 305 217 8 chr13 99523317 99523704 -20221194 - L2 LINE L2 -10 3303 2836 390 311 90 46 chr13 99523729 99524140 -20220758 - L2 LINE L2 -626 2688 2260 2361 90 0 0 chr13 99525456 99525766 -20219132 - AluSg SINE Alu 0 310 1 597 49 0 0 chr13 99526903 99526984 -20217914 + (CA)n Simple_repeat Simple_repeat 2 82 0 200 193 227 34 chr13 99527189 99527277 -20217621 - MIR SINE MIR -8 254 150 305 226 187 45 chr13 99527305 99527460 -20217438 - L1ME4a LINE L1 -5 6116 5940 234 320 46 26 chr13 99527461 99527543 -20217355 - L1MC4 LINE L1 -293 7749 7670 1701 153 4 7 chr13 99527543 99527824 -20217074 + AluJb SINE Alu 1 280 -32 189 107 0 0 chr13 99527824 99527852 -20217046 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 234 320 46 26 chr13 99527852 99528060 -20216838 - L1MC4 LINE L1 -371 7671 7357 2360 161 35 10 chr13 99528074 99528477 -20216421 - MSTB1 LTR MaLR -1 431 19 320 271 17 8 chr13 99528661 99528779 -20216119 - L1MC4 LINE L1 -802 7240 7122 241 340 19 0 chr13 99528842 99528948 -20215950 - L1MC5 LINE L1 -855 7106 6999 2089 92 0 3 chr13 99529019 99529302 -20215596 - AluSx SINE Alu -2 310 29 5307 100 36 21 chr13 99529499 99530322 -20214576 - L1MA3 LINE L1 -103 6202 5367 2304 77 0 3 chr13 99530424 99530724 -20214174 + AluSc SINE Alu 5 303 -6 258 277 116 9 chr13 99532156 99532268 -20212630 - MIR SINE MIR -117 145 22 318 294 59 0 chr13 99532344 99532463 -20212435 - HAL1b LINE L1 -2 1346 1221 1911 138 0 28 chr13 99532645 99532963 -20211935 + AluJb SINE Alu 1 309 -3 825 120 30 15 chr13 99534956 99535089 -20209809 + AluJb SINE Alu 1 135 -177 1352 155 62 52 chr13 99535089 99535379 -20209519 + AluJo SINE Alu 1 293 -19 187 118 0 39 chr13 99536881 99536932 -20207966 + (GGA)n Simple_repeat Simple_repeat 2 50 0 481 275 127 0 chr13 99538038 99538180 -20206718 - MER5B DNA MER1_type -6 172 13 27 73 0 0 chr13 99538326 99538381 -20206517 + AT_rich Low_complexity Low_complexity 1 55 0 356 297 141 13 chr13 99538776 99538948 -20205950 - MIR3 SINE MIR -7 201 2 927 71 79 0 chr13 99541335 99541461 -20203437 - MER85 DNA T2_type 0 139 4 207 0 0 0 chr13 99541852 99541875 -20203023 + (CA)n Simple_repeat Simple_repeat 2 24 0 258 327 37 28 chr13 99542189 99542296 -20202602 + L3b LINE CR1 1388 1495 -88 459 113 0 0 chr13 99544434 99544505 -20200393 + (CCA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr13 99547780 99547802 -20197096 + AT_rich Low_complexity Low_complexity 1 22 0 2202 98 3 7 chr13 99548759 99549065 -20195833 - AluSx SINE Alu -7 305 1 2648 180 48 4 chr13 99550028 99550566 -20194332 - L1MB3 LINE L1 -7 6176 5615 393 235 88 111 chr13 99552959 99553176 -20191722 + L1MC4a LINE L1 5639 5850 -1958 1768 137 3 7 chr13 99553817 99554101 -20190797 + AluJo SINE Alu 5 287 -25 391 313 61 6 chr13 99554773 99554936 -20189962 + L3 LINE CR1 775 946 -631 500 252 136 7 chr13 99554980 99555127 -20189771 + MER5B DNA MER1_type 8 173 -5 465 360 38 8 chr13 99555281 99555545 -20189353 + L3 LINE CR1 1212 1483 -94 281 239 31 135 chr13 99555573 99555736 -20189162 - MER5A DNA MER1_type -8 181 36 * 351 309 16 32 chr13 99555618 99555741 -20189157 + MER5A DNA MER1_type 50 170 -19 303 113 0 0 chr13 99555852 99555905 -20188993 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 675 216 72 11 chr13 99556479 99556660 -20188238 - L1MD3 LINE L1 0 7995 7804 267 31 0 0 chr13 99557892 99557924 -20186974 + (A)n Simple_repeat Simple_repeat 1 32 0 534 133 24 0 chr13 99558376 99558459 -20186439 + L1M3 LINE L1 5696 5780 -403 836 225 0 17 chr13 99558472 99558650 -20186248 - FRAM SINE Alu -1 175 1 1952 117 7 3 chr13 99558693 99559010 -20185888 - AluSx SINE Alu 0 318 1 2172 96 3 0 chr13 99559628 99559919 -20184979 + AluSx SINE Alu 1 292 -20 306 0 0 0 chr13 99559920 99559954 -20184944 + (CA)n Simple_repeat Simple_repeat 2 35 0 1693 171 24 14 chr13 99562012 99562304 -20182594 + AluJo SINE Alu 1 295 -17 3438 73 5 0 chr13 99563301 99563750 -20181148 - MLT2A2 LTR ERVL -2 451 1 243 0 0 0 chr13 99563848 99563875 -20181023 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 484 360 6 0 chr13 99564103 99564267 -20180631 + MIR SINE MIR 97 261 -1 1516 71 13 59 chr13 99565205 99565444 -20179454 - MER30 DNA MER1_type 0 230 3 2222 120 13 0 chr13 99565824 99566125 -20178773 - AluSq SINE Alu -8 305 1 201 156 0 0 chr13 99566478 99566510 -20178388 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 1846 169 3 10 chr13 99566640 99566948 -20177950 + AluJo SINE Alu 1 306 -6 1784 209 102 5 chr13 99567316 99567738 -20177160 - L1MC2 LINE L1 -8 6336 5874 1022 209 16 63 chr13 99569309 99569563 -20175335 + L1MD2 LINE L1 6104 6345 -14 2038 94 7 49 chr13 99570391 99570698 -20174200 + AluJo SINE Alu 1 294 -18 2592 54 0 0 chr13 99571896 99572194 -20172704 - AluSg SINE Alu -12 298 1 300 305 11 11 chr13 99572514 99572609 -20172289 - MIR SINE MIR -120 142 48 223 297 194 0 chr13 99572688 99572843 -20172055 - MIR SINE MIR -27 235 51 261 240 16 58 chr13 99573709 99573830 -20171068 + L1ME LINE L1 5255 5370 -872 1708 146 65 0 chr13 99573881 99574156 -20170742 + AluJo SINE Alu 1 293 -19 2205 125 7 0 chr13 99574922 99575227 -20169671 + AluSq SINE Alu 1 307 -6 22 88 0 0 chr13 99576201 99576258 -20168640 + AT_rich Low_complexity Low_complexity 1 57 0 365 213 11 43 chr13 99577418 99577512 -20167386 + MIR SINE MIR 64 154 -108 2591 135 11 20 chr13 99577555 99578007 -20166891 - MER83 LTR ERV1 0 448 1 2105 234 59 4 chr13 99581485 99582041 -20162857 - MER39 LTR ERV1 -27 680 94 261 247 25 12 chr13 99583291 99583372 -20161526 + MER58 DNA MER1_type 19 100 -2320 479 176 24 0 chr13 99583372 99583457 -20161441 + MER58 DNA MER1_type 2331 2417 -3 686 255 145 38 chr13 99584168 99584560 -20160338 - MLT1C LTR MaLR -33 434 1 471 196 0 0 chr13 99585407 99585509 -20159389 - L1MB4 LINE L1 0 6180 6079 787 206 19 0 chr13 99585926 99586086 -20158812 - MLT1C LTR MaLR -289 178 16 662 150 169 19 chr13 99587716 99587876 -20157022 - MER20 DNA MER1_type -35 184 1 944 161 25 0 chr13 99587915 99588077 -20156821 + FRAM SINE Alu 4 169 -7 24 53 0 0 chr13 99593092 99593130 -20151768 + AT_rich Low_complexity Low_complexity 1 38 0 249 283 26 86 chr13 99593797 99593949 -20150949 + L1ME LINE L1 5637 5779 -342 649 174 221 6 chr13 99594053 99594225 -20150673 - MER46A DNA MER2_type 0 236 28 828 211 84 4 chr13 99595170 99595421 -20149477 + MER33 DNA MER1_type 12 282 -42 461 198 57 0 chr13 99595421 99595527 -20149371 - FRAM SINE Alu -7 169 58 871 137 0 0 chr13 99595683 99595814 -20149084 - FLAM_C SINE Alu -1 132 2 246 273 0 0 chr13 99595814 99595869 -20149029 + MER33 DNA MER1_type 309 363 0 2482 79 3 0 chr13 99597740 99598044 -20146854 - AluSq SINE Alu -8 305 1 244 277 75 11 chr13 99599098 99599192 -20145706 + MIR SINE MIR 118 217 -45 1939 141 14 27 chr13 99601032 99601329 -20143569 + AluJo SINE Alu 1 293 -19 207 0 0 0 chr13 99601329 99601352 -20143546 + (GA)n Simple_repeat Simple_repeat 2 24 0 242 195 0 0 chr13 99602532 99602573 -20142325 + Alu SINE Alu 2 42 -257 427 216 62 0 chr13 99603251 99603348 -20141550 - MER5B DNA MER1_type 0 178 76 234 150 0 0 chr13 99603881 99603921 -20140977 + (CAGAA)n Simple_repeat Simple_repeat 4 43 0 2534 45 0 7 chr13 99604612 99604903 -20139995 + AluY SINE Alu 1 289 -22 2316 93 10 3 chr13 99604972 99605273 -20139625 - AluSq SINE Alu -10 303 1 292 312 43 30 chr13 99607429 99607595 -20137303 + MIR SINE MIR 16 181 -27 315 317 158 16 chr13 99607615 99607798 -20137100 - L1MC4 LINE L1 -2 8040 7832 275 232 155 54 chr13 99607815 99607983 -20136915 - L1MC5 LINE L1 -278 7683 7499 885 185 115 0 chr13 99609193 99609393 -20135505 - L1MA4 LINE L1 -6 6294 6072 1854 125 45 31 chr13 99609743 99610031 -20134867 + AluSx SINE Alu 1 292 -20 329 289 60 40 chr13 99610328 99610477 -20134421 + L1ME LINE L1 5566 5717 -404 1194 153 4 87 chr13 99610678 99610907 -20133991 - AluJo SINE Alu -102 210 1 245 240 397 0 chr13 99612953 99613099 -20131799 + L2 LINE L2 3107 3310 -3 225 303 49 57 chr13 99613560 99613682 -20131216 + L2 LINE L2 3173 3293 -20 29 47 0 0 chr13 99615405 99615448 -20129450 + AT_rich Low_complexity Low_complexity 1 43 0 2490 73 0 10 chr13 99616780 99617082 -20127816 + AluSx SINE Alu 1 299 -13 254 240 85 47 chr13 99617672 99617801 -20127097 + MLT1J LTR MaLR 33 166 -345 236 271 93 25 chr13 99618344 99618462 -20126436 + L2 LINE L2 3183 3308 -5 24 0 0 0 chr13 99618672 99618696 -20126202 + AT_rich Low_complexity Low_complexity 1 24 0 201 184 214 48 chr13 99619008 99619111 -20125787 + MIR3 SINE MIR 67 186 -22 664 246 0 8 chr13 99620153 99620279 -20124619 - FLAM_C SINE Alu -17 126 2 1728 154 45 4 chr13 99621177 99621276 -20123622 + AluSx SINE Alu 21 114 -198 204 67 0 0 chr13 99621276 99621306 -20123592 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1728 154 45 4 chr13 99621306 99621472 -20123426 + AluSx SINE Alu 114 297 -15 5087 85 31 0 chr13 99624500 99625170 -20119728 - LTR8 LTR ERV1 0 691 1 1557 103 0 17 chr13 99625376 99625610 -20119288 + L1PA7 LINE L1 5925 6154 0 681 246 79 0 chr13 99625752 99625955 -20118943 - MER20 DNA MER1_type 0 219 1 265 296 86 53 chr13 99626073 99626225 -20118673 + MIR SINE MIR 73 229 -33 347 255 131 0 chr13 99626803 99626948 -20117950 - L1MC4a LINE L1 -1831 5977 5814 670 265 79 71 chr13 99627051 99627232 -20117666 - L1MC4a LINE L1 -2168 5640 5462 1378 149 118 115 chr13 99627232 99627615 -20117283 + MLT1B LTR MaLR 3 386 -4 670 265 79 71 chr13 99627615 99627811 -20117087 - L1MC4a LINE L1 -2346 5462 5260 357 269 19 0 chr13 99628283 99628391 -20116507 - L1MD2 LINE L1 -363 5996 5887 683 176 50 0 chr13 99630646 99630765 -20114133 - AluSq/x SINE Alu -187 125 1 719 291 9 0 chr13 99631407 99631620 -20113278 + MIR SINE MIR 35 249 -13 261 250 159 93 chr13 99633271 99633775 -20111123 - MLT1H LTR MaLR -8 541 5 435 244 219 75 chr13 99634124 99634604 -20110294 - MLT1H LTR MaLR 0 549 1 649 204 111 23 chr13 99634800 99634972 -20109926 + MER5A DNA MER1_type 3 189 0 192 360 72 9 chr13 99635171 99635282 -20109616 - L2 LINE L2 -17 3255 3138 214 345 103 11 chr13 99635298 99635472 -20109426 - L2 LINE L2 -919 2395 2206 364 297 77 39 chr13 99635931 99636241 -20108657 - L2 LINE L2 -1557 1757 1436 208 253 0 67 chr13 99637387 99637462 -20107436 + CT-rich Low_complexity Low_complexity 6 75 0 353 284 138 60 chr13 99639828 99640060 -20104838 + MIR SINE MIR 3 252 -10 2157 110 0 13 chr13 99640315 99640616 -20104282 - AluSx SINE Alu -15 297 1 829 304 102 15 chr13 99641097 99641489 -20103409 - MLT1J2 LTR MaLR -4 446 21 279 221 137 0 chr13 99644513 99644608 -20100290 + MER20 DNA MER1_type 108 215 -4 23 0 0 0 chr13 99645365 99645388 -20099510 + AT_rich Low_complexity Low_complexity 1 23 0 1110 243 178 30 chr13 99645748 99645772 -20099126 - L1MD1 LINE L1 -242 6000 5981 2055 105 56 11 chr13 99645772 99646058 -20098840 + AluSx SINE Alu 1 299 -13 1110 243 178 30 chr13 99646058 99646729 -20098169 - L1MD1 LINE L1 -261 5981 5366 884 188 7 0 chr13 99646798 99646942 -20097956 + FRAM SINE Alu 1 145 -31 2251 166 82 2 chr13 99647072 99647559 -20097339 - L1MB8 LINE L1 -38 6140 5615 3261 147 92 85 chr13 99647559 99647937 -20096961 + MER54B LTR ERVL 1 375 -418 340 203 14 0 chr13 99647937 99648011 -20096887 - L1MA4 LINE L1 -16 6284 6210 3261 147 92 85 chr13 99648011 99648417 -20096481 + MER54B LTR ERVL 375 790 -3 333 205 325 7 chr13 99648469 99648620 -20096278 - L1MB8 LINE L1 -577 5597 5399 456 274 50 39 chr13 99649657 99649836 -20095062 - L1MD1 LINE L1 -966 5180 5000 299 346 28 0 chr13 99650392 99650499 -20094399 - MIR3 SINE MIR -1 207 98 268 302 201 0 chr13 99651371 99651480 -20093418 + MIR SINE MIR 78 164 -98 1828 185 42 0 chr13 99651480 99651810 -20093088 + MER2 DNA MER2_type 1 344 0 268 302 201 0 chr13 99651810 99651849 -20093049 + MIR SINE MIR 164 256 -6 2000 89 82 11 chr13 99652077 99652357 -20092541 + AluSx SINE Alu 1 300 -12 744 89 17 128 chr13 99652357 99652501 -20092397 + L1MA8 LINE L1 6129 6251 -40 1731 169 21 17 chr13 99652501 99652791 -20092107 - AluJb SINE Alu -21 291 1 744 89 17 128 chr13 99652791 99652825 -20092073 + L1MA8 LINE L1 6251 6287 -4 917 127 30 0 chr13 99653783 99653917 -20090981 + AluJo SINE Alu 1 138 -174 * 1367 170 4 17 chr13 99653916 99654151 -20090747 + AluJb SINE Alu 64 295 -17 2452 216 84 15 chr13 99654480 99655090 -20089808 - MER82 DNA MER2_type -1 652 1 2029 129 4 0 chr13 99656127 99656405 -20088493 - AluSx SINE Alu -33 279 1 204 40 0 0 chr13 99658099 99658124 -20086774 + (T)n Simple_repeat Simple_repeat 1 25 0 371 268 22 51 chr13 99658391 99658529 -20086369 - L1MA10 LINE L1 -15 6319 6186 2326 107 7 0 chr13 99658935 99659233 -20085665 + AluSx SINE Alu 1 300 -12 284 296 70 85 chr13 99659812 99660011 -20084887 + MIR SINE MIR 66 261 -1 239 212 182 15 chr13 99662364 99662430 -20082468 - L2 LINE L2 0 3272 3196 1228 175 77 45 chr13 99663200 99663486 -20081412 - AluJb SINE Alu -17 295 1 200 188 83 0 chr13 99663522 99663570 -20081328 - MIR SINE MIR -5 257 206 570 259 23 23 chr13 99664670 99664844 -20080054 + MIR SINE MIR 2 175 -87 2124 105 3 0 chr13 99665167 99665462 -20079436 - AluSx SINE Alu -9 303 8 211 194 0 0 chr13 99665610 99665646 -20079252 + (CA)n Simple_repeat Simple_repeat 2 37 0 217 284 0 30 chr13 99666421 99666488 -20078410 + MIR SINE MIR 2 66 -196 1740 247 43 58 chr13 99666647 99667320 -20077578 + L1MB7 LINE L1 5512 6174 -10 374 246 115 16 chr13 99667355 99667477 -20077421 + L2 LINE L2 3137 3270 -2 1254 72 26 67 chr13 99667629 99667823 -20077075 + PABL_A LTR ERV1 2 187 -473 1794 199 38 30 chr13 99671672 99672065 -20072833 - MSTD LTR MaLR 0 396 1 25 51 0 0 chr13 99672784 99672823 -20072075 + AT_rich Low_complexity Low_complexity 1 39 0 505 45 0 0 chr13 99672835 99672901 -20071997 - L1MA2 LINE L1 0 6304 6239 1822 125 39 0 chr13 99675256 99675535 -20069363 - AluSx SINE Alu -19 293 4 2235 232 70 12 chr13 99675906 99676520 -20068378 - ERVL LTR ERVL -5076 688 2 2222 63 7 13 chr13 99680083 99680382 -20064516 - AluY SINE Alu -14 297 1 291 68 0 23 chr13 99680404 99680448 -20064450 + Alu SINE Alu 35 77 -223 1946 123 0 0 chr13 99680559 99680836 -20064062 - AluSx SINE Alu -35 277 1 251 286 36 24 chr13 99680836 99680920 -20063978 + L2 LINE L2 3185 3269 -3 253 284 11 11 chr13 99680926 99681014 -20063884 + GA-rich Low_complexity Low_complexity 1 88 0 2037 123 3 0 chr13 99681182 99681475 -20063423 + AluSx SINE Alu 1 294 -18 429 325 42 12 chr13 99681664 99681830 -20063068 - MIR SINE MIR -71 191 21 1440 175 0 7 chr13 99681830 99682099 -20062799 + AluJo SINE Alu 38 304 -8 303 324 33 66 chr13 99683386 99683568 -20061330 + MER5B DNA MER1_type 1 176 -2 323 296 71 0 chr13 99683741 99683839 -20061059 + MIR SINE MIR 85 189 -73 231 189 132 0 chr13 99683931 99683984 -20060914 + MER63A DNA MER1_type 148 207 -3 425 321 68 32 chr13 99684354 99684606 -20060292 - L2 LINE L2 -3 3310 3050 1073 247 207 43 chr13 99684633 99684877 -20060021 + MLT1E1 LTR MaLR 1 204 -420 2021 110 20 13 chr13 99684877 99685178 -20059720 + AluSx SINE Alu 1 303 -9 1073 247 207 43 chr13 99685178 99685497 -20059401 + MLT1E1 LTR MaLR 204 623 -1 382 336 268 8 chr13 99685691 99686072 -20058826 - L2 LINE L2 -618 2696 2217 275 264 170 9 chr13 99686166 99686272 -20058626 + L2 LINE L2 3142 3264 -8 201 180 0 60 chr13 99686313 99686363 -20058535 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 348 256 122 11 chr13 99687016 99687196 -20057702 + L1ME4a LINE L1 5700 5899 -222 351 303 99 14 chr13 99687639 99687781 -20057117 + L1ME4a LINE L1 5964 6117 -4 1845 144 197 8 chr13 99688022 99688382 -20056516 + MSTA LTR MaLR 1 428 0 365 227 13 104 chr13 99688459 99688613 -20056285 - MER58B DNA MER1_type 0 341 202 378 0 0 0 chr13 99689617 99689659 -20055239 + (TG)n Simple_repeat Simple_repeat 2 43 0 1140 135 0 0 chr13 99689660 99689830 -20055068 - AluSq SINE Alu -12 301 132 719 60 0 0 chr13 99689832 99689916 -20054982 + AluSq/x SINE Alu 46 129 -184 1977 138 0 16 chr13 99690687 99690991 -20053907 - AluJb SINE Alu -13 299 1 756 179 14 0 chr13 99691233 99691378 -20053520 + L1MC3 LINE L1 7117 7263 -522 895 262 24 27 chr13 99691379 99691602 -20053296 - Cheshire DNA MER1_type -2111 309 86 1950 136 7 0 chr13 99691602 99691903 -20052995 + AluSx SINE Alu 1 303 -9 895 262 24 27 chr13 99691903 99691973 -20052925 - Cheshire DNA MER1_type -2334 86 17 2841 251 82 4 chr13 99693347 99693787 -20051111 + L1MB5 LINE L1 2600 3005 -3141 1657 179 3 28 chr13 99693787 99694105 -20050793 + AluJb SINE Alu 3 312 0 2841 251 82 4 chr13 99694105 99694571 -20050327 + L1MB5 LINE L1 3005 3576 -2570 * 3236 216 30 8 chr13 99694560 99695351 -20049547 + L1MB5 LINE L1 4233 5041 -1105 4203 163 40 28 chr13 99695353 99695992 -20048906 + L1MB5 LINE L1 5267 5920 -254 1675 167 7 10 chr13 99695992 99696280 -20048618 - AluJb SINE Alu -19 293 7 4203 163 40 28 chr13 99696280 99696497 -20048401 + L1MB5 LINE L1 5920 6133 -41 2479 159 63 15 chr13 99696500 99696978 -20047920 + L1MB2 LINE L1 5670 6170 -1 689 261 36 50 chr13 99697358 99697707 -20047191 + MLT1E2 LTR MaLR 207 450 -55 1666 169 0 34 chr13 99699117 99699437 -20045461 + AluSx SINE Alu 1 309 -3 1686 290 129 43 chr13 99699569 99701059 -20043839 + L2 LINE L2 1609 3305 -8 1923 136 17 3 chr13 99701344 99701646 -20043252 + AluSx SINE Alu 1 306 -6 770 112 45 30 chr13 99701749 99701883 -20043015 + AluJo SINE Alu 2 137 -175 356 282 97 105 chr13 99702047 99702409 -20042489 + L2 LINE L2 2869 3227 -86 993 204 18 131 chr13 99702564 99703059 -20041839 - L1MC5 LINE L1 -157 7804 7366 1927 145 13 0 chr13 99703137 99703440 -20041458 - AluSx SINE Alu -5 307 1 399 184 0 0 chr13 99703866 99703953 -20040945 + GA-rich Low_complexity Low_complexity 4 90 0 2159 118 0 3 chr13 99704204 99704517 -20040381 + AluSx SINE Alu 1 312 0 540 240 53 22 chr13 99704611 99705280 -20039618 + HAL1b LINE L1 77 795 -553 404 235 0 10 chr13 99705307 99705405 -20039493 + MLT1B LTR MaLR 61 157 -233 723 194 8 15 chr13 99705405 99705539 -20039359 + FLAM_A SINE Alu 5 137 -5 342 0 0 0 chr13 99705548 99705586 -20039312 + (TC)n Simple_repeat Simple_repeat 1 38 0 1151 178 20 15 chr13 99705586 99705788 -20039110 + MLT1B LTR MaLR 188 390 0 2156 122 0 0 chr13 99706025 99706329 -20038569 - AluSq SINE Alu -9 304 1 26 0 0 0 chr13 99706503 99706529 -20038369 + AT_rich Low_complexity Low_complexity 1 26 0 290 26 26 0 chr13 99706571 99706610 -20038288 + (CA)n Simple_repeat Simple_repeat 2 41 0 785 209 12 17 chr13 99707003 99707175 -20037723 - MIR SINE MIR -25 237 67 2168 117 0 0 chr13 99707250 99707550 -20037348 + AluSx SINE Alu 1 300 -12 189 107 0 0 chr13 99707550 99707578 -20037320 + (GA)n Simple_repeat Simple_repeat 1 28 0 2277 82 0 22 chr13 99707924 99708240 -20036658 - AluSc SINE Alu 0 309 1 948 187 110 9 chr13 99708636 99708855 -20036043 + L1MC4 LINE L1 7797 8037 -5 22 0 0 0 chr13 99710513 99710535 -20034363 + AT_rich Low_complexity Low_complexity 1 22 0 586 259 66 18 chr13 99710535 99710701 -20034197 + L1ME1 LINE L1 5988 6161 -5 228 318 47 12 chr13 99711436 99711521 -20033377 + MIR SINE MIR 49 136 -126 381 245 72 36 chr13 99711550 99711689 -20033209 + L2 LINE L2 3124 3267 -5 266 0 29 0 chr13 99713263 99713297 -20031601 + (TA)n Simple_repeat Simple_repeat 1 35 0 2546 58 0 0 chr13 99713620 99713964 -20030934 + AluY SINE Alu 1 311 0 2222 129 0 0 chr13 99714660 99714969 -20029929 + AluSx SINE Alu 1 309 -3 341 78 31 47 chr13 99714969 99715033 -20029865 - MER41B LTR ERV1 -92 543 481 2114 135 0 0 chr13 99715033 99715366 -20029532 - L1P4 LINE L1 -381 5785 5453 764 97 22 0 chr13 99715365 99715499 -20029399 + L1P4 LINE L1 5325 5461 -705 * 413 222 17 17 chr13 99715667 99715784 -20029114 - MER4A LTR ERV1 -547 117 1 2031 151 0 0 chr13 99716071 99716362 -20028536 + AluSx SINE Alu 1 291 -21 1264 198 139 36 chr13 99716606 99716965 -20027933 - MSTD LTR MaLR 0 396 1 5124 206 59 39 chr13 99716976 99718235 -20026663 - MSTD-int LTR MaLR -13 1722 439 865 173 61 143 chr13 99718399 99718728 -20026170 - MLT1A1 LTR MaLR -63 302 1 408 262 19 15 chr13 99719158 99719317 -20025581 + MLT1L LTR MaLR 382 563 -44 914 255 70 8 chr13 99719318 99719733 -20025165 + L1MEc LINE L1 2198 2597 -3618 251 200 18 0 chr13 99719902 99719957 -20024941 - L1ME3 LINE L1 -220 5942 5887 1739 181 40 31 chr13 99719976 99720397 -20024501 - L1ME3 LINE L1 -374 5790 5366 1580 171 46 9 chr13 99720472 99720822 -20024076 - MER93b LTR ERV1 0 373 11 1812 132 55 28 chr13 99720824 99721113 -20023785 - AluSx SINE Alu -15 297 1 1926 144 43 45 chr13 99721345 99721721 -20023177 - THE1C LTR MaLR 0 375 1 230 261 61 43 chr13 99722050 99722165 -20022733 + LTR35 LTR ERV1 1 117 -501 576 240 61 71 chr13 99722272 99722611 -20022287 + LTR35 LTR ERV1 350 618 0 270 313 67 26 chr13 99722646 99722914 -20021984 - L1M4 LINE L1 -2136 4010 3732 424 116 0 0 chr13 99723274 99723343 -20021555 - Alu SINE Alu -4 305 237 1950 120 4 4 chr13 99723346 99723621 -20021277 - AluSx SINE Alu -37 275 1 456 295 42 45 chr13 99723828 99723993 -20020905 - L1M4 LINE L1 -3113 3033 2869 2108 129 7 0 chr13 99723993 99724280 -20020618 - AluSx SINE Alu -23 289 1 456 295 42 45 chr13 99724280 99724473 -20020425 - L1M4 LINE L1 -3277 2869 2676 1398 218 85 28 chr13 99724831 99725221 -20019677 + MLT1C LTR MaLR 53 464 -3 207 0 0 0 chr13 99725743 99725766 -20019132 + (TTG)n Simple_repeat Simple_repeat 2 24 0 231 36 0 0 chr13 99726551 99726579 -20018319 + (T)n Simple_repeat Simple_repeat 1 28 0 233 303 97 48 chr13 99726670 99726898 -20018000 + L2 LINE L2 1547 1785 -1529 382 284 162 0 chr13 99727070 99727218 -20017680 + L2 LINE L2 1786 1957 -1357 2586 116 23 28 chr13 99727225 99727570 -20017328 + MSTA LTR MaLR 1 345 -83 2057 131 50 39 chr13 99727570 99727930 -20016968 + THE1B LTR MaLR 1 364 0 2586 116 23 28 chr13 99727930 99728014 -20016884 + MSTA LTR MaLR 345 428 0 1170 246 131 94 chr13 99728019 99728274 -20016624 + L2 LINE L2 1982 2226 -1088 2080 108 16 22 chr13 99728274 99728588 -20016310 + AluSx SINE Alu 1 312 0 1170 246 131 94 chr13 99728588 99729042 -20015856 + L2 LINE L2 2226 2717 -597 1002 224 39 0 chr13 99729076 99729335 -20015563 - L1MEc LINE L1 -2322 3893 3625 470 316 92 18 chr13 99729436 99729664 -20015234 + L2 LINE L2 2702 2946 -368 987 122 52 29 chr13 99729671 99729843 -20015055 - MER1B DNA MER1_type -4 335 160 14965 146 26 7 chr13 99729843 99734962 -20009936 - L1M1 LINE L1 -743 6822 1756 3771 48 89 2 chr13 99734990 99735926 -20008972 - MER11A LTR ERVK 0 1266 1 9809 156 32 16 chr13 99735926 99737635 -20007263 - L1M1 LINE L1 -5818 1747 13 341 193 48 24 chr13 99737649 99737732 -20007166 - L1MEc LINE L1 -4086 2310 2226 1791 195 54 20 chr13 99738457 99738904 -20005994 - L1MD3 LINE L1 -1 7994 7533 1887 220 22 0 chr13 99739015 99739479 -20005419 + L1M4 LINE L1 2532 3005 -3141 348 155 0 0 chr13 99739483 99739541 -20005357 - ERVL LTR ERVL -779 4985 4928 801 218 14 0 chr13 99741091 99741238 -20003660 - MER5A DNA MER1_type -40 149 1 916 118 0 15 chr13 99741342 99741477 -20003421 + AluSq/x SINE Alu 1 133 -179 483 110 130 10 chr13 99742077 99742177 -20002721 + LTR52 LTR ERVL 1 112 -309 384 177 238 22 chr13 99742173 99742354 -20002544 + HsTC2 DNA Tc2 35 254 -1644 * 444 224 140 0 chr13 99742371 99742550 -20002348 + HsTC2 DNA Tc2 1695 1898 0 2168 113 0 0 chr13 99742717 99743028 -20001870 - AluSx SINE Alu 0 311 1 272 314 189 46 chr13 99743624 99744353 -20000545 + L2 LINE L2 2360 3180 -92 239 250 69 0 chr13 99745075 99745147 -19999751 - MIR3 SINE MIR -46 162 86 438 275 105 39 chr13 99745428 99745657 -19999241 + MIR SINE MIR 5 248 -14 361 134 45 0 chr13 99746047 99746114 -19998784 - L1M2 LINE L1 -6299 550 481 381 185 92 59 chr13 99746163 99746282 -19998616 - MER65A LTR ERV1 -322 123 1 27 49 0 0 chr13 99746834 99746875 -19998023 + AT_rich Low_complexity Low_complexity 1 41 0 845 229 43 43 chr13 99747309 99747684 -19997214 + L1MD2 LINE L1 4372 4746 -1400 1870 165 0 3 chr13 99747703 99747988 -19996910 + AluSx SINE Alu 1 284 -28 824 245 131 4 chr13 99748017 99748376 -19996522 + MER57A LTR ERV1 22 403 0 1386 212 22 24 chr13 99748380 99748795 -19996103 + L1MD2 LINE L1 4751 5164 -982 9047 202 35 14 chr13 99748796 99750724 -19994174 + L1MA4A LINE L1 1 1968 -4881 40769 32 23 1 chr13 99750724 99756743 -19988155 + L1PA2 LINE L1 2 6155 0 12198 193 35 63 chr13 99756727 99757862 -19987036 + L1MA4A LINE L1 1964 3129 -3876 * 2112 132 0 26 chr13 99757862 99758173 -19986725 + AluSx SINE Alu 1 303 -9 12198 193 35 63 chr13 99758173 99759522 -19985376 + L1MA4A LINE L1 3129 4514 -2491 1453 174 0 19 chr13 99759522 99759781 -19985117 + AluJo SINE Alu 1 254 -58 599 171 0 0 chr13 99759781 99759886 -19985012 + AluJb SINE Alu 192 296 -16 12198 193 35 63 chr13 99759886 99761268 -19983630 + L1MA4A LINE L1 4513 5932 -1073 1669 193 14 7 chr13 99761268 99761553 -19983345 + AluJo SINE Alu 1 287 -25 12198 193 35 63 chr13 99761553 99762157 -19982741 + L1MA4A LINE L1 5932 6423 -582 1152 101 0 0 chr13 99762157 99762335 -19982563 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 12198 193 35 63 chr13 99762335 99762899 -19981999 + L1MA4A LINE L1 6423 7001 -4 3847 190 90 36 chr13 99762895 99764033 -19980865 + L1MD2 LINE L1 5152 6355 -4 * 187 322 0 0 chr13 99764431 99764490 -19980408 - L2 LINE L2 0 3313 3255 7303 26 0 0 chr13 99765037 99765891 -19979007 + L1PA4 LINE L1 5302 6155 0 28 48 0 0 chr13 99766455 99766497 -19978401 + AT_rich Low_complexity Low_complexity 1 42 0 2064 152 143 2 chr13 99766595 99767050 -19977848 + L1MB7 LINE L1 5647 6165 -19 24 32 0 0 chr13 99768354 99768385 -19976513 + AT_rich Low_complexity Low_complexity 1 31 0 431 186 151 45 chr13 99768504 99768683 -19976215 + MER58C DNA MER1_type 2 215 0 917 192 10 25 chr13 99768809 99769012 -19975886 + AluJo SINE Alu 82 281 -31 334 325 16 24 chr13 99769186 99769312 -19975586 + MIR3 SINE MIR 63 187 -21 2784 86 6 0 chr13 99769487 99769849 -19975049 - THE1B LTR MaLR 0 364 1 1668 179 124 22 chr13 99769967 99770513 -19974385 - Charlie1 DNA MER1_type -18 2743 2142 323 270 14 0 chr13 99770506 99770580 -19974318 - Charlie1 DNA MER1_type -2686 75 1 * 272 264 42 0 chr13 99770667 99770739 -19974159 - L1ME LINE L1 -594 5568 5494 199 283 20 61 chr13 99771556 99771655 -19973243 - MIR SINE MIR -57 205 111 918 268 128 25 chr13 99771787 99772223 -19972675 - MLT1E LTR MaLR 0 593 113 718 133 117 8 chr13 99772342 99772470 -19972428 + AluJo SINE Alu 1 142 -170 381 185 148 28 chr13 99772471 99772579 -19972319 - MLT1E LTR MaLR -472 121 1 1645 170 3 18 chr13 99772945 99773228 -19971670 + AluJo SINE Alu 4 282 -30 2442 84 0 0 chr13 99773254 99773562 -19971336 + AluSg SINE Alu 1 308 -2 575 230 40 35 chr13 99774632 99774832 -19970066 + L1MB8 LINE L1 5977 6177 -1 873 182 7 0 chr13 99775978 99776121 -19968777 + AluJo SINE Alu 145 288 -24 1763 132 75 11 chr13 99776132 99776412 -19968486 + AluSx SINE Alu 1 298 -14 1266 196 0 9 chr13 99777098 99777317 -19967581 - AluJo SINE Alu -20 292 76 21 0 0 0 chr13 99778072 99778093 -19966805 + AT_rich Low_complexity Low_complexity 1 21 0 303 299 46 148 chr13 99778804 99779108 -19965790 - L2 LINE L2 -14 3258 2986 1913 152 33 55 chr13 99779270 99779550 -19965348 - L1MD1 LINE L1 -83 6159 5889 527 189 23 53 chr13 99779550 99779682 -19965216 - FLAM_A SINE Alu -5 128 1 1913 152 33 55 chr13 99779682 99779821 -19965077 - L1MD1 LINE L1 -353 5889 5749 1857 74 4 0 chr13 99779821 99780050 -19964848 + AluSp SINE Alu 63 292 -21 1286 185 33 42 chr13 99780051 99780381 -19964517 - L1MDa LINE L1 -6189 351 25 2039 109 13 0 chr13 99780385 99780688 -19964210 - L1PA8 LINE L1 -2 6170 5864 308 192 169 31 chr13 99781975 99782105 -19962793 - L1ME4a LINE L1 -34 6087 5940 261 0 0 0 chr13 99782124 99782153 -19962745 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr13 99782152 99782172 -19962726 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 839 102 8 0 chr13 99782422 99782550 -19962348 + (TA)n Simple_repeat Simple_repeat 2 130 0 2036 123 0 0 chr13 99783344 99783621 -19961277 - AluSx SINE Alu -8 304 28 295 230 230 10 chr13 99784286 99784386 -19960512 + L2 LINE L2 3191 3312 -1 2285 90 0 23 chr13 99784477 99784778 -19960120 - AluSg SINE Alu -16 294 1 4103 163 26 25 chr13 99784795 99785468 -19959430 - L1MB2 LINE L1 -2 6169 5493 2010 122 0 48 chr13 99785468 99785780 -19959118 - AluSx SINE Alu -15 297 1 4103 163 26 25 chr13 99785780 99785976 -19958922 - L1MB2 LINE L1 -678 5493 5299 373 261 0 11 chr13 99785989 99786081 -19958817 + MIR SINE MIR 128 218 -44 2272 103 0 0 chr13 99786468 99786758 -19958140 + AluSq SINE Alu 1 290 -23 227 157 14 0 chr13 99786759 99786829 -19958069 + (TA)n Simple_repeat Simple_repeat 2 72 0 351 269 64 78 chr13 99788725 99788944 -19955954 - L1MC4 LINE L1 -1 8041 7826 938 211 89 53 chr13 99788984 99789061 -19955837 - L1ME2 LINE L1 -10 6223 6150 1290 185 123 64 chr13 99789061 99789499 -19955399 - MER31B LTR ERV1 0 466 3 938 211 89 53 chr13 99789499 99789758 -19955140 - L1ME2 LINE L1 -83 6150 5875 1049 194 16 0 chr13 99789760 99789946 -19954952 - MER58A DNA MER1_type -1 223 35 1175 244 84 16 chr13 99790016 99790529 -19954369 - L1ME2 LINE L1 -352 5881 5334 2285 252 110 39 chr13 99790533 99790931 -19953967 - L1ME2 LINE L1 -2260 3955 3587 2148 130 3 16 chr13 99790931 99791247 -19953651 - AluJb SINE Alu 0 312 1 2285 252 110 39 chr13 99791247 99791507 -19953391 - L1ME2 LINE L1 -2628 3587 3347 2416 82 3 3 chr13 99791507 99791810 -19953088 - AluSc SINE Alu -6 303 1 2285 252 110 39 chr13 99791810 99792863 -19952035 - L1ME2 LINE L1 -2868 3347 2136 701 234 8 0 chr13 99792875 99793003 -19951895 - FAM SINE Alu -56 129 1 276 246 23 9 chr13 99793094 99793224 -19951674 - HAL1b LINE L1 -193 2314 794 23 33 0 0 chr13 99793759 99793789 -19951109 + AT_rich Low_complexity Low_complexity 1 30 0 328 322 137 7 chr13 99793826 99793972 -19950926 - HAL1 LINE L1 -643 1864 1700 268 292 189 22 chr13 99794648 99795193 -19949705 - HAL1b LINE L1 -492 856 221 1047 289 88 0 chr13 99795357 99795821 -19949077 + L1MB2 LINE L1 2379 2883 -3263 511 297 42 7 chr13 99795828 99796114 -19948784 + L1MB2 LINE L1 4519 4814 -1332 907 263 20 7 chr13 99796150 99796447 -19948451 + L1MB2 LINE L1 5678 5978 -193 2544 58 3 3 chr13 99796888 99797198 -19947700 - AluY SINE Alu -1 310 1 663 273 78 17 chr13 99798360 99798591 -19946307 - L2 LINE L2 -595 2719 2475 7006 54 22 37 chr13 99799448 99800732 -19944166 - L1PA7 LINE L1 -1 6153 4873 189 0 0 0 chr13 99800743 99800764 -19944134 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1896 105 111 22 chr13 99801377 99801692 -19943206 - MER61A LTR ERV1 0 343 1 2607 200 48 6 chr13 99801882 99802421 -19942477 - MER68 LTR ERV1 0 562 1 552 125 0 10 chr13 99802465 99802561 -19942337 + AluJb SINE Alu 137 231 -81 22 0 0 0 chr13 99802583 99802605 -19942293 + AT_rich Low_complexity Low_complexity 1 22 0 2236 90 3 26 chr13 99803090 99803401 -19941497 - AluSg SINE Alu -6 304 1 701 141 124 0 chr13 99805320 99805441 -19939457 - AluJo SINE Alu -176 136 1 241 224 0 0 chr13 99806405 99806463 -19938435 - L1ME2 LINE L1 -169 5995 5938 5876 73 86 17 chr13 99806792 99807868 -19937030 - L1PA13 LINE L1 -6 6157 5031 1972 100 97 0 chr13 99811121 99811400 -19933498 - AluY SINE Alu -5 306 1 1765 181 13 3 chr13 99813084 99813383 -19931515 - AluJo SINE Alu -10 302 1 234 341 0 0 chr13 99813537 99813622 -19931276 + L2 LINE L2 2487 2571 -743 187 145 97 65 chr13 99814513 99814575 -19930323 - MIR SINE MIR -77 185 122 197 196 22 22 chr13 99817770 99817816 -19927082 - MIR SINE MIR -111 151 106 189 0 0 0 chr13 99817926 99817947 -19926951 + (T)n Simple_repeat Simple_repeat 1 21 0 777 161 179 12 chr13 99817985 99818147 -19926751 - MER5A DNA MER1_type 0 189 1 415 237 46 98 chr13 99818347 99818541 -19926357 + L1MA9 LINE L1 6091 6274 -38 989 324 57 49 chr13 99819844 99820063 -19924835 + L2 LINE L2 991 1207 -2107 1792 167 3 22 chr13 99820063 99820380 -19924518 - AluJo SINE Alu -1 311 1 989 324 57 49 chr13 99820380 99820772 -19924126 + L2 LINE L2 1207 1607 -1707 384 74 4 0 chr13 99820777 99820830 -19924068 - MSTD LTR MaLR -13 383 324 240 262 202 0 chr13 99821628 99821712 -19923186 - L2 LINE L2 -4 3268 3168 395 122 49 49 chr13 99821932 99822014 -19922884 - L1PA16 LINE L1 0 6166 6085 2576 103 86 39 chr13 99822014 99822371 -19922527 + MSTA LTR MaLR 1 381 -47 2203 98 0 29 chr13 99822371 99822678 -19922220 + AluSg1 SINE Alu 1 298 -11 2576 103 86 39 chr13 99822678 99822729 -19922169 + MSTA LTR MaLR 381 428 0 9734 150 44 11 chr13 99822729 99824327 -19920571 + MSTA-int LTR MaLR 1 1651 0 621 72 12 0 chr13 99824327 99824410 -19920488 + MSTA LTR MaLR 1 84 -344 5054 198 55 25 chr13 99824418 99824693 -19920205 - L1P5 LINE L1 -558 5598 5333 2397 85 0 0 chr13 99824693 99824987 -19919911 - AluY SINE Alu -17 294 1 5054 198 55 25 chr13 99824987 99826285 -19918613 - L1P5 LINE L1 -823 5333 3962 321 161 0 16 chr13 99826307 99826369 -19918529 + L1 LINE L1 4519 4579 -1567 8456 194 31 25 chr13 99826381 99827246 -19917652 - L1 LINE L1 -1374 4772 3914 1650 156 50 0 chr13 99827246 99827528 -19917370 - AluSx SINE Alu -16 296 1 8456 194 31 25 chr13 99827528 99827647 -19917251 - L1 LINE L1 -2232 3914 3797 381 22 0 0 chr13 99827647 99827693 -19917205 + (TG)n Simple_repeat Simple_repeat 1 46 0 8456 194 31 25 chr13 99827693 99828706 -19916192 - L1 LINE L1 -2349 3797 2761 7249 67 10 45 chr13 99828711 99830841 -19914057 - SVA Other Other -520 1386 2 252 0 0 0 chr13 99830846 99830874 -19914024 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 1307 265 13 5 chr13 99830876 99831250 -19913648 - L1 LINE L1 -3372 2774 2398 2344 82 0 0 chr13 99831550 99831842 -19913056 - AluY SINE Alu -15 296 5 22 35 0 0 chr13 99833320 99833349 -19911549 + AT_rich Low_complexity Low_complexity 1 29 0 5706 219 105 33 chr13 99835259 99835475 -19909423 - L1PA15-16 LINE L1 -3736 3113 2914 1721 68 0 0 chr13 99835475 99835681 -19909217 - AluY SINE Alu -18 293 88 5706 219 105 33 chr13 99835681 99837196 -19907702 - L1PA15-16 LINE L1 -3935 2914 1268 275 320 94 63 chr13 99837479 99837798 -19907100 - L2 LINE L2 -363 2951 2623 221 281 193 22 chr13 99838359 99838494 -19906404 + MIR SINE MIR 78 235 -27 1500 168 71 20 chr13 99838541 99838838 -19906060 - AluJb SINE Alu 0 312 1 729 225 0 0 chr13 99838841 99838970 -19905928 - FLAM_A SINE Alu -1 132 4 801 226 105 5 chr13 99838977 99839167 -19905731 - MER34C LTR ERV1 -373 212 4 286 197 0 56 chr13 99839855 99839926 -19904972 + MER3 DNA MER1_type 2 68 -141 1948 189 149 31 chr13 99839926 99840449 -19904449 + MER34C LTR ERV1 1 585 0 411 165 63 0 chr13 99840449 99840527 -19904371 + MER3 DNA MER1_type 72 154 -55 261 259 92 23 chr13 99840618 99840749 -19904149 - L1MC4 LINE L1 -19 8023 7884 568 221 77 55 chr13 99840837 99841018 -19903880 - L1ME2 LINE L1 -15 6149 5965 1927 155 73 42 chr13 99841156 99841510 -19903388 + MLT1A1 LTR MaLR 1 365 0 3840 272 72 43 chr13 99841664 99841745 -19903153 - HERVL LTR ERVL -240 5524 5447 2975 232 28 12 chr13 99841745 99842388 -19902510 + MER82 DNA MER2_type 1 653 0 3840 272 72 43 chr13 99842388 99843575 -19901323 - HERVL LTR ERVL -317 5447 4209 2279 113 0 0 chr13 99843575 99843875 -19901023 - AluSx SINE Alu -12 300 1 3840 272 72 43 chr13 99843875 99844030 -19900868 - HERVL LTR ERVL -1555 4209 4060 1784 154 3 41 chr13 99844244 99844562 -19900336 - AluJo SINE Alu -6 306 1 317 309 7 122 chr13 99844571 99844866 -19900032 - HERVL LTR ERVL -4312 1342 1082 941 206 0 28 chr13 99844869 99845049 -19899849 - MER58B DNA MER1_type 0 341 167 515 325 61 28 chr13 99845060 99845634 -19899264 - HERVL LTR ERVL -4637 1127 462 2360 130 0 32 chr13 99845700 99846045 -19898853 - MER1B DNA MER1_type 0 337 4 321 240 19 46 chr13 99846348 99846478 -19898420 - LTR41 LTR ERVL 0 795 649 588 264 54 6 chr13 99846886 99847053 -19897845 - LTR41 LTR ERVL -595 178 4 1125 276 85 33 chr13 99847130 99847590 -19897308 + L2 LINE L2 2815 3298 -15 25 31 0 0 chr13 99847872 99847904 -19896994 + AT_rich Low_complexity Low_complexity 1 32 0 31 76 0 0 chr13 99848120 99848186 -19896712 + AT_rich Low_complexity Low_complexity 1 66 0 2594 42 0 19 chr13 99848352 99848662 -19896236 - AluY SINE Alu -7 304 1 1346 180 75 56 chr13 99848948 99849253 -19895645 - AluJo SINE Alu 0 312 2 1879 160 3 13 chr13 99849400 99849713 -19895185 - AluJb SINE Alu -2 310 1 1903 156 7 10 chr13 99849940 99850247 -19894651 + AluSx SINE Alu 1 306 -6 785 236 139 3 chr13 99850337 99850625 -19894273 + L1M4 LINE L1 2385 2711 -3435 * 803 221 99 109 chr13 99850615 99851091 -19893807 + L1M4 LINE L1 3672 4142 -2004 2118 115 20 13 chr13 99851091 99851395 -19893503 - AluSx SINE Alu -6 306 1 484 216 3 50 chr13 99851407 99851542 -19893356 - L1M4 LINE L1 -1828 4318 4187 249 186 0 0 chr13 99851543 99851586 -19893312 + THE1C LTR MaLR 66 108 -247 2221 113 3 3 chr13 99851608 99851918 -19892980 + THE1C LTR MaLR 66 375 0 1143 203 176 20 chr13 99851942 99852385 -19892513 + L1M4 LINE L1 4157 4668 -1478 659 150 100 0 chr13 99853007 99853107 -19891791 + FRAM SINE Alu 36 145 -31 806 161 0 63 chr13 99853834 99853977 -19890921 + FLAM_C SINE Alu 7 140 -3 1658 136 9 94 chr13 99853979 99854309 -19890589 + AluSx SINE Alu 1 302 -10 3385 189 44 51 chr13 99854344 99855134 -19889764 - LTR1 LTR ERV1 0 785 1 2317 125 64 9 chr13 99855683 99856028 -19888870 + THE1B LTR MaLR 1 364 0 2081 124 3 0 chr13 99856551 99856834 -19888064 - AluSx SINE Alu -28 284 1 3145 184 17 34 chr13 99856927 99857513 -19887385 - MER21B LTR ERV1 -54 809 234 1111 252 59 28 chr13 99857518 99857808 -19887090 - MER21B LTR ERV1 -564 299 1 1072 143 63 0 chr13 99858044 99858219 -19886679 + MER2 DNA MER2_type 160 345 0 187 250 0 0 chr13 99858337 99858377 -19886521 - L2 LINE L2 -246 3026 2987 233 257 168 0 chr13 99858488 99858589 -19886309 - L1ME4a LINE L1 -9 6112 5995 208 237 53 0 chr13 99858996 99859026 -19885872 + T-rich Low_complexity Low_complexity 5 32 -52 4012 154 27 24 chr13 99859026 99859778 -19885120 - L1MB3 LINE L1 -2 6181 5428 208 237 53 0 chr13 99859778 99859823 -19885075 + T-rich Low_complexity Low_complexity 32 84 0 560 114 0 0 chr13 99859835 99859923 -19884975 - L1MB3 LINE L1 -743 5440 5353 1128 146 21 47 chr13 99860624 99860816 -19884082 + AluJo SINE Alu 1 187 -125 738 168 30 15 chr13 99860816 99860947 -19883951 + AluJb SINE Alu 148 280 -32 21 0 0 0 chr13 99860947 99860968 -19883930 + GC_rich Low_complexity Low_complexity 1 21 0 180 246 31 15 chr13 99861178 99861243 -19883655 + L2 LINE L2 2857 2922 -350 196 182 130 52 chr13 99861360 99861437 -19883461 + L2 LINE L2 3223 3305 -8 241 288 23 45 chr13 99864054 99864186 -19880712 + L3 LINE CR1 1391 1519 -58 331 252 35 52 chr13 99864200 99864315 -19880583 + MER5B DNA MER1_type 2 114 -64 1942 122 11 7 chr13 99864738 99865025 -19879873 - AluSx SINE Alu -24 288 1 24 32 0 0 chr13 99865256 99865287 -19879611 + AT_rich Low_complexity Low_complexity 1 31 0 265 295 36 89 chr13 99865627 99865739 -19879159 + L2 LINE L2 3136 3241 -31 316 0 0 0 chr13 99866428 99866463 -19878435 + (TTTG)n Simple_repeat Simple_repeat 2 164 0 2456 49 0 3 chr13 99866463 99866748 -19878150 - AluY SINE Alu -27 284 1 230 245 0 0 chr13 99866815 99866864 -19878034 + GA-rich Low_complexity Low_complexity 1 49 0 2404 87 3 0 chr13 99866865 99867174 -19877724 - AluSp SINE Alu -3 310 1 306 282 48 51 chr13 99867420 99867792 -19877106 + HAL1 LINE L1 818 1188 -1319 4866 184 40 13 chr13 99867802 99869553 -19875345 + L1MB2 LINE L1 4369 6170 -1 225 286 18 27 chr13 99869546 99869658 -19875240 + HAL1 LINE L1 1179 1289 -1218 * 316 278 30 15 chr13 99869717 99869850 -19875048 + L1MB8 LINE L1 2946 3080 -3066 593 228 35 70 chr13 99869853 99870068 -19874830 + MER21B LTR ERV1 576 850 -81 2196 199 57 2 chr13 99870083 99870590 -19874308 + L1MB8 LINE L1 4550 5084 -1062 9554 115 58 13 chr13 99870592 99872109 -19872789 - Tigger2 DNA MER2_type 0 2718 1134 5743 123 121 11 chr13 99873325 99874328 -19870570 - Tigger2 DNA MER2_type -1605 1113 1 2260 190 42 26 chr13 99874331 99875249 -19869649 + L1MB8 LINE L1 5088 6168 -10 851 262 64 17 chr13 99875252 99875657 -19869241 + L1ME1 LINE L1 1853 2276 -4120 1018 223 89 7 chr13 99875660 99875929 -19868969 - MER58B DNA MER1_type -4 337 47 435 265 90 0 chr13 99876001 99876167 -19868731 + L1ME1 LINE L1 2262 2442 -3773 1814 151 87 65 chr13 99876180 99876472 -19868426 + MSTA LTR MaLR 4 309 -119 660 157 8 8 chr13 99876472 99876593 -19868305 + L1MB8 LINE L1 6040 6160 -18 1814 151 87 65 chr13 99876593 99876716 -19868182 + MSTA LTR MaLR 309 428 0 8650 185 18 1 chr13 99876716 99878204 -19866694 + MSTA-int LTR MaLR 1 1513 -138 939 87 0 0 chr13 99878198 99878325 -19866573 - MST-int LTR MaLR -12 1639 1513 * 2681 231 104 41 chr13 99878334 99879397 -19865501 + L1ME1 LINE L1 3690 4685 -1718 2258 143 58 31 chr13 99879397 99879811 -19865087 + MSTA LTR MaLR 2 426 -2 2681 231 104 41 chr13 99879811 99880460 -19864438 + L1ME1 LINE L1 4685 5292 -1111 2115 134 0 3 chr13 99880460 99880751 -19864147 + AluSx SINE Alu 1 290 -22 2681 231 104 41 chr13 99880751 99880800 -19864098 + L1ME1 LINE L1 5292 6390 -13 1665 168 14 0 chr13 99880924 99881209 -19863689 + AluJo SINE Alu 7 295 -17 302 269 119 60 chr13 99881404 99881605 -19863293 + L1MEc LINE L1 2823 3035 -3180 1474 182 24 20 chr13 99881646 99881943 -19862955 + AluJo SINE Alu 1 298 -14 369 276 159 33 chr13 99882825 99883039 -19861859 - HAL1b LINE L1 -417 931 691 232 273 0 23 chr13 99883090 99883178 -19861720 + L1MC4 LINE L1 6621 6706 -1336 258 271 79 33 chr13 99883185 99883399 -19861499 + L1MEc LINE L1 2745 2968 -3247 1836 174 23 0 chr13 99883491 99883796 -19861102 + AluSx SINE Alu 1 312 0 361 292 53 66 chr13 99883989 99884215 -19860683 + L1MEc LINE L1 3658 3880 -2335 5055 177 44 9 chr13 99884225 99886202 -19858696 - L1PB2 LINE L1 -2 6206 4165 6076 166 58 9 chr13 99886218 99889585 -19855313 - L1PB2 LINE L1 -2787 3416 1 259 188 0 0 chr13 99889585 99889633 -19855265 + L1MEc LINE L1 3865 3912 -2303 26 50 0 0 chr13 99889650 99889690 -19855208 + AT_rich Low_complexity Low_complexity 1 40 0 385 315 84 36 chr13 99889725 99889978 -19854920 + L1MEc LINE L1 3951 4190 -2025 186 43 0 0 chr13 99889978 99890001 -19854897 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 385 315 84 36 chr13 99890001 99890247 -19854651 + L1MEc LINE L1 4190 4474 -1741 287 268 72 42 chr13 99890455 99890720 -19854178 + L1MEc LINE L1 4702 4974 -1241 246 221 136 0 chr13 99890745 99890826 -19854072 + L1M LINE L1 5386 5474 -750 1597 165 57 75 chr13 99890858 99891245 -19853653 + MLT1B LTR MaLR 11 390 0 3029 133 21 4 chr13 99891288 99891753 -19853145 + LTR26B LTR ERV1 3 475 -56 18022 63 5 0 chr13 99891753 99894905 -19849993 + L1PA5 LINE L1 2956 6154 0 335 322 154 17 chr13 99895052 99895403 -19849495 - L1MC4a LINE L1 -1966 5842 5444 221 163 20 0 chr13 99895443 99895492 -19849406 + CT-rich Low_complexity Low_complexity 3 52 0 526 257 37 37 chr13 99897257 99897444 -19847454 - L2 LINE L2 -747 2567 2381 23 0 0 0 chr13 99897776 99897799 -19847099 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr13 99897831 99897857 -19847041 + (TG)n Simple_repeat Simple_repeat 1 26 0 839 223 43 9 chr13 99897885 99898096 -19846802 + MER20 DNA MER1_type 2 219 0 1324 171 25 7 chr13 99898555 99898829 -19846069 - MER33 DNA MER1_type -45 279 1 2103 123 3 3 chr13 99899653 99899961 -19844937 - AluSq SINE Alu -5 308 1 2653 210 27 13 chr13 99899989 99900537 -19844361 + MER68 LTR ERV1 3 558 -4 341 352 74 6 chr13 99901049 99901211 -19843687 + L2 LINE L2 8 180 -3134 2660 219 39 11 chr13 99901527 99902243 -19842655 + L1M4 LINE L1 4092 4827 -1319 304 188 0 29 chr13 99902243 99902312 -19842586 + L1MC1 LINE L1 6257 6323 -10 1230 273 140 51 chr13 99902348 99902912 -19841986 + L2 LINE L2 720 1333 -1981 3224 187 19 0 chr13 99902916 99903542 -19841356 - L1MB7 LINE L1 -188 5996 5359 6872 69 6 9 chr13 99903666 99904835 -19840063 + L1PA8 LINE L1 5000 6165 -7 180 0 0 0 chr13 99904840 99904860 -19840038 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 2385 197 29 29 chr13 99904867 99904941 -19839957 - L1MB7 LINE L1 -798 5348 5275 980 102 0 182 chr13 99904941 99905177 -19839721 - 7SK RNA RNA 0 193 1 2385 197 29 29 chr13 99905177 99905685 -19839213 - L1MB7 LINE L1 -870 5276 4766 2359 215 50 62 chr13 99905693 99906101 -19838797 - L1ME2 LINE L1 -65 6099 5688 1081 285 124 26 chr13 99906101 99906641 -19838257 + MLT1E LTR MaLR 1 593 0 2359 215 50 62 chr13 99906641 99907558 -19837340 - L1ME2 LINE L1 -476 5688 4762 2347 101 0 9 chr13 99907558 99907874 -19837024 - AluSq SINE Alu 0 313 1 2359 215 50 62 chr13 99907874 99908796 -19836102 - L1ME2 LINE L1 -1402 4762 3760 5661 85 26 14 chr13 99908796 99910071 -19834827 - SVA Other Other -954 1380 12 2359 215 50 62 chr13 99910071 99910639 -19834259 - L1ME2 LINE L1 -2404 3760 3187 231 36 0 0 chr13 99910663 99910691 -19834207 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 6165 185 35 17 chr13 99910745 99912751 -19832147 - L1MC1 LINE L1 0 6333 4289 24 32 0 0 chr13 99912839 99912870 -19832028 + AT_rich Low_complexity Low_complexity 1 31 0 2343 82 0 23 chr13 99912875 99913181 -19831717 + AluY SINE Alu 1 299 -12 28 61 0 0 chr13 99913200 99913249 -19831649 + AT_rich Low_complexity Low_complexity 1 49 0 861 120 0 0 chr13 99913307 99913432 -19831466 - L1PA15 LINE L1 -13 6152 6028 34 0 0 0 chr13 99913445 99913479 -19831419 + AT_rich Low_complexity Low_complexity 1 34 0 527 218 47 57 chr13 99913480 99913673 -19831225 - L1MC1 LINE L1 -1827 4319 4129 318 226 113 16 chr13 99913674 99913798 -19831100 - L1ME2 LINE L1 -3034 3112 2977 783 347 73 21 chr13 99913897 99914508 -19830390 + MERVL LTR ERVL 3838 4486 -1092 1232 200 122 27 chr13 99914509 99914804 -19830094 + LTR16A LTR ERVL 128 450 0 532 320 74 38 chr13 99914823 99915348 -19829550 - L2 LINE L2 -920 2394 1851 686 314 163 29 chr13 99915805 99916254 -19828644 + L2 LINE L2 2804 3312 -1 2672 80 13 8 chr13 99916531 99916904 -19827994 + THE1C LTR MaLR 1 375 0 182 315 64 79 chr13 99916909 99917112 -19827786 - L2 LINE L2 -902 2412 2213 863 287 22 0 chr13 99917611 99917834 -19827064 + MIR SINE MIR 35 262 0 25 31 0 0 chr13 99918541 99918573 -19826325 + AT_rich Low_complexity Low_complexity 1 32 0 1254 172 4 64 chr13 99918648 99918915 -19825983 + AluJo SINE Alu 40 290 -22 763 158 0 82 chr13 99919117 99919288 -19825610 - FRAM SINE Alu 0 40 1 432 294 80 37 chr13 100019492 100019818 -19725080 - L1MC5 LINE L1 -141 7820 7481 1541 88 36 0 chr13 100020591 100020785 -19724113 - AluSc SINE Alu -108 201 1 1864 213 42 18 chr13 100021035 100021485 -19723413 + MLT1C LTR MaLR 7 467 0 2227 103 3 3 chr13 100021551 100021851 -19723047 - AluSg SINE Alu -8 302 3 2352 102 3 10 chr13 100021853 100022166 -19722732 - AluSq SINE Alu -2 311 1 1279 233 204 19 chr13 100022412 100022869 -19722029 + Charlie7 DNA MER1_type 1426 1798 -814 1421 149 112 41 chr13 100022869 100023138 -19721760 + AluSx SINE Alu 1 288 -24 1279 233 204 19 chr13 100023138 100023402 -19721496 + Charlie7 DNA MER1_type 1798 2280 -332 306 0 0 0 chr13 100024229 100024263 -19720635 + (TG)n Simple_repeat Simple_repeat 2 35 0 576 223 40 29 chr13 100024977 100025152 -19719746 + L1ME3 LINE L1 5770 5946 -216 2022 116 0 30 chr13 100025974 100026275 -19718623 - AluSx SINE Alu -20 292 1 1843 113 59 121 chr13 100026896 100027284 -19717614 - THE1B LTR MaLR 0 364 1 497 274 96 0 chr13 100027301 100027489 -19717409 + MER115 DNA AcHobo 490 4031 0 2183 122 0 10 chr13 100027575 100027887 -19717011 - AluSq SINE Alu 0 313 5 1873 188 39 59 chr13 100027953 100028319 -19716579 - MLT1C LTR MaLR -19 448 91 2312 128 0 0 chr13 100028319 100028631 -19716267 - AluSx SINE Alu 0 312 1 1873 188 39 59 chr13 100028631 100028721 -19716177 - MLT1C LTR MaLR -376 91 1 226 269 0 0 chr13 100029078 100029130 -19715768 + MIR SINE MIR 48 99 -109 231 193 79 88 chr13 100029139 100029253 -19715645 - MER5A DNA MER1_type 0 189 77 204 40 0 0 chr13 100029263 100029288 -19715610 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2151 120 0 0 chr13 100029305 100029588 -19715310 - AluSg SINE Alu -27 283 1 438 169 169 16 chr13 100029591 100029644 -19715254 - L1MB2 LINE L1 -346 5825 5781 231 36 0 0 chr13 100029644 100029672 -19715226 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 438 169 169 16 chr13 100029672 100029742 -19715156 - L1MB2 LINE L1 -390 5781 5683 2345 99 0 7 chr13 100030374 100030678 -19714220 - AluSx SINE Alu -10 302 1 433 209 48 9 chr13 100030684 100030789 -19714109 + MER34 LTR ERV1 432 540 -2 497 244 7 37 chr13 100030791 100030926 -19713972 - MER74B LTR ERVL -442 180 50 1673 181 3 10 chr13 100031226 100031514 -19713384 - AluJo SINE Alu -26 286 1 2282 58 0 7 chr13 100032470 100032745 -19712153 - AluY SINE Alu -38 273 1 1448 174 3 90 chr13 100032752 100033073 -19711825 - AluJo SINE Alu -19 293 1 487 223 113 88 chr13 100033385 100033467 -19711431 - L2 LINE L2 -78 3235 3157 2373 87 3 3 chr13 100033467 100033778 -19711120 + AluY SINE Alu 1 311 0 487 223 113 88 chr13 100033778 100033882 -19711016 - L2 LINE L2 -156 3157 3057 1504 202 89 80 chr13 100033882 100034210 -19710688 + MLT2B1 LTR ERVL 2 338 -182 1983 142 0 19 chr13 100034210 100034520 -19710378 - AluJb SINE Alu -4 308 5 1504 202 89 80 chr13 100034520 100034705 -19710193 + MLT2B1 LTR ERVL 338 520 0 487 223 113 88 chr13 100034705 100034800 -19710098 - L2 LINE L2 -256 3057 2946 2607 199 39 2 chr13 100034888 100035430 -19709468 - MER68 LTR ERV1 0 562 1 862 195 18 12 chr13 100036037 100036206 -19708692 + MLT1A2 LTR MaLR 5 174 -200 312 119 0 0 chr13 100036209 100036268 -19708630 + (TC)n Simple_repeat Simple_repeat 2 60 0 301 225 28 38 chr13 100036268 100036353 -19708545 + MLT1A2 LTR MaLR 173 271 -119 2032 132 3 0 chr13 100036623 100036911 -19707987 + AluSx SINE Alu 6 294 -18 1534 89 9 13 chr13 100037396 100037620 -19707278 - L1MA5A LINE L1 -248 6049 5827 1495 100 44 20 chr13 100037620 100037658 -19707240 + L1MA5A LINE L1 6039 6075 -222 4990 85 20 25 chr13 100037658 100038349 -19706549 + LTR12 LTR ERV1 1 688 0 1495 100 44 20 chr13 100038349 100038546 -19706352 + L1MA5A LINE L1 6075 6293 -4 183 276 35 0 chr13 100038620 100038678 -19706220 - L2 LINE L2 -7 3306 3247 187 312 64 37 chr13 100038746 100038855 -19706043 - L2 LINE L2 -193 3079 2968 1836 156 28 97 chr13 100038929 100039212 -19705686 - MLT2C1 LTR ERVL -2 395 149 1745 160 140 9 chr13 100039212 100039562 -19705336 - MSTD LTR MaLR 0 396 1 1836 156 28 97 chr13 100039562 100039702 -19705196 - MLT2C1 LTR ERVL -248 149 1 2779 125 31 5 chr13 100039917 100040332 -19704566 + MSTB LTR MaLR 1 426 0 200 255 0 0 chr13 100040539 100040586 -19704312 + L2 LINE L2 3214 3260 -12 327 264 96 62 chr13 100040601 100040809 -19704089 - L3 LINE CR1 -397 1180 966 488 222 175 47 chr13 100040825 100040996 -19703902 - L2 LINE L2 0 3313 3121 1427 123 25 152 chr13 100041014 100041358 -19703540 + MER61C LTR ERV1 1 378 -56 3197 145 20 68 chr13 100041358 100041509 -19703389 - LTR9 LTR ERV1 0 612 455 369 0 0 0 chr13 100041509 100041550 -19703348 + (TG)n Simple_repeat Simple_repeat 1 41 0 3197 145 20 68 chr13 100041550 100042041 -19702857 - LTR9 LTR ERV1 -157 455 1 1427 123 25 152 chr13 100042041 100042092 -19702806 + MER61C LTR ERV1 378 434 0 253 231 0 0 chr13 100042134 100042186 -19702712 - L2 LINE L2 -253 3060 3009 1956 194 111 12 chr13 100042389 100042883 -19702015 + MER74B LTR ERVL 79 621 -1 371 300 115 48 chr13 100042885 100043285 -19701613 - L3 LINE CR1 -753 824 398 281 174 29 43 chr13 100043295 100043364 -19701534 + MER21B LTR ERV1 1 68 -795 3815 187 65 24 chr13 100043397 100044188 -19700710 + MER21B LTR ERV1 19 841 -22 977 126 0 7 chr13 100044325 100044460 -19700438 + AluSq/x SINE Alu 2 135 -178 2422 82 0 0 chr13 100044460 100044751 -19700147 + AluSg SINE Alu 1 291 -19 2166 119 0 0 chr13 100045609 100045931 -19698967 + AluSx SINE Alu 1 322 0 1898 165 3 19 chr13 100046858 100047173 -19697725 - AluSx SINE Alu -2 310 1 1451 238 77 62 chr13 100047176 100047268 -19697630 - L1MC5 LINE L1 -32 7929 7840 3038 122 14 2 chr13 100047268 100047711 -19697187 - MER83 LTR ERV1 0 448 1 1451 238 77 62 chr13 100047711 100047829 -19697069 - L1MC5 LINE L1 -121 7840 7725 186 43 0 0 chr13 100047829 100047852 -19697046 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 1451 238 77 62 chr13 100047852 100048034 -19696864 - L1MC5 LINE L1 -236 7725 7547 2572 50 0 7 chr13 100048034 100048337 -19696561 - AluY SINE Alu -10 301 1 1451 238 77 62 chr13 100048337 100048687 -19696211 - L1MC5 LINE L1 -414 7547 7174 371 184 11 23 chr13 100048706 100048793 -19696105 + L1MC5 LINE L1 7658 7743 -218 * 488 199 150 66 chr13 100048789 100049015 -19695883 - L1MC5 LINE L1 -793 7168 6924 2512 112 16 19 chr13 100050038 100050414 -19694484 - THE1C LTR MaLR 0 375 1 1718 183 17 0 chr13 100051212 100051507 -19693391 - AluJo SINE Alu -12 300 1 309 272 81 60 chr13 100051598 100051833 -19693065 - L1ME LINE L1 -414 5707 5468 285 314 58 17 chr13 100053760 100053932 -19690966 + L2 LINE L2 2687 2865 -449 227 358 84 14 chr13 100054006 100054291 -19690607 + L2 LINE L2 1753 2057 -1257 280 242 0 30 chr13 100054298 100054364 -19690534 - Tigger7 DNA MER2_type -32 2455 2392 1271 233 4 8 chr13 100054366 100054619 -19690279 - Tigger7 DNA MER2_type -469 264 13 352 244 63 39 chr13 100054622 100054749 -19690149 + MER65A LTR ERV1 1 130 -315 275 251 94 47 chr13 100054930 100055101 -19689797 + MER65A LTR ERV1 267 445 0 3485 54 16 0 chr13 100055608 100056059 -19688839 + L1PA6 LINE L1 5701 6158 0 317 219 42 31 chr13 100056062 100056158 -19688740 + MER103 DNA DNA 48 144 -22 248 286 0 0 chr13 100056465 100056528 -19688370 - L2 LINE L2 -8 3305 3243 197 319 75 0 chr13 100056801 100056895 -19688003 - MIR SINE MIR -114 148 48 250 200 307 0 chr13 100057063 100057138 -19687760 - LTR40a LTR ERVL 0 519 422 954 226 49 30 chr13 100057179 100057444 -19687454 - LTR40c LTR ERVL -195 270 1 23 33 0 0 chr13 100058821 100058851 -19686047 + AT_rich Low_complexity Low_complexity 1 30 0 1685 87 134 8 chr13 100058902 100059178 -19685720 - AluSg SINE Alu 0 308 1 747 206 19 25 chr13 100059189 100059349 -19685549 - L1MC1 LINE L1 -19 6314 6156 964 104 0 22 chr13 100059412 100059546 -19685352 - AluSg SINE Alu -179 131 1 25 0 0 0 chr13 100059556 100059581 -19685317 + AT_rich Low_complexity Low_complexity 1 25 0 2063 90 61 0 chr13 100060551 100060830 -19684068 - AluY SINE Alu -14 297 2 747 163 0 41 chr13 100061640 100061787 -19683111 - FLAM_C SINE Alu -1 142 2 21 0 0 0 chr13 100065041 100065062 -19679836 + AT_rich Low_complexity Low_complexity 1 21 0 2366 98 0 0 chr13 100066076 100066381 -19678517 + AluSx SINE Alu 1 305 -7 518 177 63 131 chr13 100067138 100067313 -19677585 - MER58B DNA MER1_type 0 341 179 434 153 0 0 chr13 100067397 100067469 -19677429 + MIR SINE MIR 100 171 -91 2114 82 19 70 chr13 100067562 100067878 -19677020 - AluSc SINE Alu -9 300 1 296 175 111 0 chr13 100068370 100068433 -19676465 + MIR SINE MIR 159 228 -34 508 173 118 0 chr13 100068506 100068616 -19676282 - MER65A LTR ERV1 0 445 323 623 175 25 17 chr13 100068626 100068746 -19676152 - FLAM_C SINE Alu -3 140 20 1379 143 101 62 chr13 100068748 100069019 -19675879 - MER65A LTR ERV1 -123 322 36 2120 127 3 0 chr13 100069019 100069310 -19675588 - AluSx SINE Alu -20 292 1 1379 143 101 62 chr13 100069310 100069346 -19675552 - MER65A LTR ERV1 -409 36 3 1779 101 112 4 chr13 100070172 100070439 -19674459 + AluSg SINE Alu 1 296 -14 1912 165 3 0 chr13 100070451 100070748 -19674150 + AluJb SINE Alu 1 298 -14 2694 29 0 13 chr13 100071201 100071509 -19673389 + AluY SINE Alu 1 304 -7 1124 44 0 29 chr13 100071768 100071904 -19672994 + AluY SINE Alu 1 132 -179 358 108 46 0 chr13 100072162 100072227 -19672671 - MER113 DNA MER1_type? -277 244 177 990 127 0 7 chr13 100072255 100072397 -19672501 + FRAM SINE Alu 21 161 -15 309 264 72 48 chr13 100072397 100072564 -19672334 - MER113 DNA MER1_type? -345 176 6 1166 145 54 9 chr13 100072698 100072919 -19671979 - L1MB3 LINE L1 -150 6033 5803 456 231 46 8 chr13 100072920 100073050 -19671848 + LTR33A LTR ERVL 388 522 -1 2286 108 3 3 chr13 100073407 100073713 -19671185 - AluSx SINE Alu -6 306 1 219 289 78 56 chr13 100073716 100073858 -19671040 + MIR SINE MIR 46 190 -72 2507 65 0 7 chr13 100074387 100074694 -19670204 + AluY SINE Alu 1 305 -6 2102 118 0 3 chr13 100074705 100075024 -19669874 + AluSx SINE Alu 1 318 0 1676 169 10 13 chr13 100075545 100075846 -19669052 - AluJo SINE Alu -12 300 1 1812 155 10 14 chr13 100075973 100076269 -19668629 - AluJb SINE Alu -13 299 5 1643 172 25 11 chr13 100076273 100076558 -19668340 - AluJo SINE Alu -19 293 5 947 187 0 36 chr13 100077027 100077193 -19667705 + FRAM SINE Alu 1 159 -17 2309 90 0 3 chr13 100077512 100077800 -19667098 - AluSc SINE Alu -22 287 1 2183 124 0 0 chr13 100078262 100078553 -19666345 + AluSx SINE Alu 1 291 -21 1626 156 56 90 chr13 100078577 100078913 -19665985 + MLT1A1 LTR MaLR 1 347 -18 387 0 0 0 chr13 100078913 100078956 -19665942 + (TG)n Simple_repeat Simple_repeat 2 44 0 1963 114 26 26 chr13 100078956 100079263 -19665635 - AluSq SINE Alu -6 307 1 1626 156 56 90 chr13 100079263 100079303 -19665595 + MLT1A1 LTR MaLR 345 365 0 1182 156 47 97 chr13 100079695 100079965 -19664933 + MER33 DNA MER1_type 1 283 -2302 1704 113 3 122 chr13 100079965 100080294 -19664604 - AluYa8 SINE Alu -20 290 1 1182 156 47 97 chr13 100080294 100080333 -19664565 + MER33 DNA MER1_type 283 294 -2291 2263 119 0 3 chr13 100080333 100080636 -19664262 - AluSx SINE Alu -10 302 1 1182 156 47 97 chr13 100080636 100080665 -19664233 + MER33 DNA MER1_type 294 323 -1 2186 101 0 11 chr13 100081151 100081464 -19663434 + AluSx SINE Alu 1 310 0 3169 206 67 87 chr13 100081793 100081929 -19662969 - L1MD2 LINE L1 -84 6275 6138 255 31 0 0 chr13 100081929 100081961 -19662937 + (TG)n Simple_repeat Simple_repeat 2 33 0 3169 206 67 87 chr13 100081961 100082150 -19662748 - L1MD2 LINE L1 -221 6138 5947 1827 114 42 11 chr13 100082150 100082413 -19662485 + AluSx SINE Alu 12 282 -30 3169 206 67 87 chr13 100082413 100083203 -19661695 - L1MD2 LINE L1 -412 5947 5174 1217 209 28 77 chr13 100083207 100083570 -19661328 + L1M4 LINE L1 4429 4773 -1373 716 196 116 17 chr13 100083720 100083893 -19661005 + AluJo SINE Alu 117 306 -6 258 326 134 13 chr13 100085215 100085335 -19659563 + L1ME LINE L1 4055 4159 -1987 2302 97 3 10 chr13 100085335 100085643 -19659255 + AluSq SINE Alu 1 306 -7 258 326 134 13 chr13 100085643 100085746 -19659152 + L1ME LINE L1 4159 4305 -1841 1860 178 3 0 chr13 100086154 100086452 -19658446 + AluJb SINE Alu 1 299 -13 210 91 0 0 chr13 100086464 100086497 -19658401 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 1612 65 70 17 chr13 100086497 100086727 -19658171 - L1PB1 LINE L1 0 6151 5910 2287 63 3 3 chr13 100086784 100087092 -19657806 + AluY SINE Alu 1 308 0 233 250 31 31 chr13 100087284 100087380 -19657518 + L1ME LINE L1 5180 5275 -871 1507 151 147 4 chr13 100087403 100087661 -19657237 - AluJb SINE Alu -7 295 1 2196 88 35 0 chr13 100087912 100088197 -19656701 - AluY SINE Alu -11 300 6 279 229 150 16 chr13 100088267 100088394 -19656504 + L1ME LINE L1 5670 5812 -352 25 0 0 0 chr13 100089111 100089136 -19655762 + AT_rich Low_complexity Low_complexity 1 25 0 2533 57 0 0 chr13 100089288 100089585 -19655313 - AluY SINE Alu -14 297 1 180 0 0 0 chr13 100089636 100089656 -19655242 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 2182 122 0 0 chr13 100090171 100090467 -19654431 + AluSx SINE Alu 1 296 -16 2393 92 0 3 chr13 100091313 100091619 -19653279 + AluY SINE Alu 1 305 -6 746 187 0 0 chr13 100092360 100092483 -19652415 - FLAM_C SINE Alu -19 124 2 1949 125 42 11 chr13 100092652 100092802 -19652096 - AluSx SINE Alu -16 296 152 2022 150 0 0 chr13 100092802 100093088 -19651810 - AluSx SINE Alu -26 286 1 1949 125 42 11 chr13 100093088 100093224 -19651674 - AluSx SINE Alu -160 152 1 2442 70 0 13 chr13 100093310 100093625 -19651273 - AluY SINE Alu 0 311 1 2222 117 10 0 chr13 100094878 100095185 -19649713 + AluSq SINE Alu 1 310 -3 363 163 331 24 chr13 100095391 100095557 -19649341 - MER5C DNA MER1_type -72 252 36 1902 116 29 4 chr13 100096184 100096507 -19648391 - AluSx SINE Alu 0 330 1 1646 139 49 4 chr13 100096507 100096676 -19648222 - AluSx SINE Alu -11 301 113 396 0 0 0 chr13 100096676 100096720 -19648178 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1646 139 49 4 chr13 100096720 100096816 -19648082 - AluSx SINE Alu -199 113 23 2764 48 0 0 chr13 100097673 100097984 -19646914 - AluY SINE Alu 0 311 1 1716 133 97 25 chr13 100098177 100098456 -19646442 - AluSx SINE Alu -13 299 1 223 316 170 28 chr13 100099543 100099831 -19645067 + L2 LINE L2 1993 2321 -993 216 188 0 21 chr13 100100128 100100176 -19644722 + L2 LINE L2 3262 3308 -5 226 282 19 58 chr13 100100366 100100469 -19644429 + L2 LINE L2 3152 3250 -22 24 32 0 0 chr13 100101154 100101185 -19643713 + AT_rich Low_complexity Low_complexity 1 31 0 2030 118 38 0 chr13 100102091 100102380 -19642518 - AluSx SINE Alu -12 300 1 210 37 0 0 chr13 100102584 100102611 -19642287 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1544 140 9 4 chr13 100102614 100102843 -19642055 - AluJb SINE Alu -25 287 58 2075 107 0 0 chr13 100102843 100103115 -19641783 - AluSg SINE Alu -38 272 1 1087 164 124 69 chr13 100103979 100104254 -19640644 - AluJo SINE Alu -11 291 2 1621 116 4 84 chr13 100104376 100104651 -19640247 - AluSx SINE Alu -21 291 39 1582 140 92 0 chr13 100105603 100105853 -19639045 - AluSx SINE Alu -27 285 13 26 50 0 0 chr13 100105890 100105930 -19638968 + AT_rich Low_complexity Low_complexity 1 40 0 261 0 0 0 chr13 100106553 100106582 -19638316 + (TG)n Simple_repeat Simple_repeat 2 30 0 204 298 18 0 chr13 100106584 100106641 -19638257 + L2 LINE L2 3193 3250 -22 2395 75 0 35 chr13 100107390 100107709 -19637189 - AluSq SINE Alu -5 308 1 2318 102 0 0 chr13 100107968 100108271 -19636627 - AluSx SINE Alu -9 303 1 472 221 99 8 chr13 100109071 100109202 -19635696 - MER69 DNA AcHobo -1079 147 5 733 134 0 70 chr13 100109388 100109530 -19635368 - FLAM_C SINE Alu 0 133 2 261 0 0 0 chr13 100109540 100109569 -19635329 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 1917 139 3 3 chr13 100109573 100109861 -19635037 - AluJb SINE Alu -24 288 1 1947 144 0 3 chr13 100109871 100110155 -19634743 - AluSx SINE Alu -6 306 24 392 256 103 13 chr13 100110228 100110384 -19634514 - L1MC5 LINE L1 -68 7893 7724 187 250 159 0 chr13 100110581 100110669 -19634229 - L2 LINE L2 -28 3244 3143 1984 118 3 17 chr13 100110996 100111284 -19633614 - AluSx SINE Alu -28 284 1 1277 126 6 0 chr13 100111318 100111501 -19633397 - AluSg/x SINE Alu -2 310 127 2919 10 0 0 chr13 100112191 100112502 -19632396 - AluY SINE Alu 0 311 1 490 182 0 30 chr13 100112552 100112651 -19632247 + FLAM_A SINE Alu 30 125 -17 441 286 43 0 chr13 100112663 100112803 -19632095 + L1MB5 LINE L1 5011 5156 -990 1696 191 7 3 chr13 100112816 100113120 -19631778 - AluSx SINE Alu -7 305 1 1492 210 24 3 chr13 100113127 100113418 -19631480 - AluJo SINE Alu -15 297 1 227 261 38 127 chr13 100113505 100113593 -19631305 + MLT1K LTR MaLR 156 226 -362 2658 118 25 43 chr13 100113593 100114083 -19630815 - MER31A LTR ERV1 -4 481 1 227 261 38 127 chr13 100114083 100114151 -19630747 + MLT1K LTR MaLR 226 298 -290 261 0 0 0 chr13 100114586 100114615 -19630283 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 569 156 25 57 chr13 100114719 100114841 -19630057 + FLAM_C SINE Alu 2 119 -24 251 322 171 0 chr13 100114870 100115016 -19629882 - MIR SINE MIR -6 256 86 1949 120 53 3 chr13 100115112 100115396 -19629502 - AluSx SINE Alu -14 298 1 2619 198 83 34 chr13 100115432 100116047 -19628851 + L1MB5 LINE L1 5518 6162 -12 23 0 0 0 chr13 100116051 100116074 -19628824 + AT_rich Low_complexity Low_complexity 1 23 0 254 287 74 0 chr13 100116273 100116381 -19628517 + MIR SINE MIR 127 242 -20 2165 105 0 0 chr13 100116381 100116657 -19628241 + AluSc SINE Alu 2 277 -32 755 239 16 92 chr13 100116711 100117016 -19627882 - LTR41 LTR ERVL -6 767 486 1590 198 67 17 chr13 100117177 100117521 -19627377 - MLT1A1 LTR MaLR -4 361 1 592 199 110 20 chr13 100117525 100117671 -19627227 - LTR41 LTR ERVL -613 160 2 1840 134 31 3 chr13 100117857 100118148 -19626750 - AluSx SINE Alu -13 299 1 451 182 11 0 chr13 100118388 100118476 -19626422 + FLAM SINE Alu 44 132 -11 218 321 128 28 chr13 100118985 100119203 -19625695 + MIR SINE MIR 9 248 -14 2043 122 7 17 chr13 100119219 100119515 -19625383 - AluSx SINE Alu -19 293 1 1860 162 0 32 chr13 100119555 100119870 -19625028 - AluJo SINE Alu -7 305 1 273 340 55 72 chr13 100120229 100120464 -19624434 - L2 LINE L2 -2 3270 3040 2126 88 26 29 chr13 100120466 100120774 -19624124 + AluSp SINE Alu 1 307 -6 1943 162 40 26 chr13 100120814 100121166 -19623732 - THE1B LTR MaLR -7 357 1 226 343 14 14 chr13 100121170 100121310 -19623588 - L2 LINE L2 -299 2973 2834 272 229 24 108 chr13 100121504 100121668 -19623230 + L1PA8A LINE L1 5659 5809 -312 1734 164 7 17 chr13 100121688 100121975 -19622923 - AluJb SINE Alu -28 284 1 21 0 0 0 chr13 100122096 100122117 -19622781 + AT_rich Low_complexity Low_complexity 1 21 0 2188 123 7 0 chr13 100122336 100122637 -19622261 + AluSx SINE Alu 1 303 -9 209 253 76 25 chr13 100122761 100122840 -19622058 + MIR SINE MIR 180 262 0 753 90 0 10 chr13 100123194 100123294 -19621604 - THE1C LTR MaLR 0 364 266 * 784 99 0 0 chr13 100123293 100123394 -19621504 - THE1C LTR MaLR -274 101 1 2413 93 0 3 chr13 100123574 100123885 -19621013 + AluSg SINE Alu 1 310 0 225 292 34 11 chr13 100124003 100124092 -19620806 + L1ME LINE L1 1 91 -5979 2946 130 93 26 chr13 100124094 100124632 -19620266 + MER4B LTR ERV1 1 574 -36 336 149 38 2 chr13 100124706 100124746 -19620152 + AluS SINE Alu 1 38 -265 2880 10 0 0 chr13 100124746 100125055 -19619843 + AluYa5 SINE Alu 1 309 -2 2249 81 0 3 chr13 100125053 100125337 -19619561 + AluSc SINE Alu 27 309 0 * 336 149 38 2 chr13 100125055 100125377 -19619521 + AluS SINE Alu 38 57 -246 311 325 80 76 chr13 100125680 100125982 -19618916 + L1ME LINE L1 252 554 -5516 2163 21 0 0 chr13 100125984 100126226 -19618672 + AluYb8 SINE Alu 1 242 -76 2206 77 0 64 chr13 100126495 100126806 -19618092 + AluY SINE Alu 1 291 -20 1494 229 16 46 chr13 100127442 100127809 -19617089 - L1M4 LINE L1 -6171 371 16 3954 97 150 145 chr13 100127825 100129202 -19615696 - pTR5 LTR ERV1 0 2438 743 2012 275 83 42 chr13 100129730 100129803 -19615095 - HAL1 LINE L1 -2 2505 2437 1549 194 21 3 chr13 100129803 100130087 -19614811 + AluJo SINE Alu 1 289 -23 186 43 0 0 chr13 100130091 100130114 -19614784 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2012 275 83 42 chr13 100130114 100130606 -19614292 - HAL1 LINE L1 -72 2435 1882 2158 132 6 3 chr13 100130606 100130917 -19613981 - AluSx SINE Alu 0 312 1 2012 275 83 42 chr13 100130917 100131232 -19613666 - HAL1 LINE L1 -625 1882 1582 237 65 0 0 chr13 100131851 100131882 -19613016 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2017 129 3 14 chr13 100131884 100132036 -19612862 - AluSq SINE Alu -29 284 135 2185 120 0 0 chr13 100132036 100132336 -19612562 - AluSx SINE Alu -12 300 1 2017 129 3 14 chr13 100132336 100132470 -19612428 - AluSq SINE Alu -178 135 1 189 236 73 0 chr13 100132902 100132957 -19611941 + MIR SINE MIR 89 147 -61 2039 137 3 26 chr13 100133247 100133560 -19611338 + AluJb SINE Alu 1 306 -6 466 204 10 29 chr13 100134002 100134105 -19610793 - MIR SINE MIR -3 259 159 2401 82 0 0 chr13 100134156 100134460 -19610438 - AluSg SINE Alu -6 304 1 318 218 211 30 chr13 100134462 100134595 -19610303 - MIR SINE MIR -93 169 13 660 123 0 0 chr13 100134598 100134712 -19610186 + (CA)n Simple_repeat Simple_repeat 1 114 0 1687 165 152 3 chr13 100135016 100135331 -19609567 + MLT1A1 LTR MaLR 4 365 0 2385 93 3 0 chr13 100135588 100135888 -19609010 - AluSx SINE Alu -11 301 1 314 186 129 0 chr13 100136265 100136335 -19608563 - MER5A DNA MER1_type -45 144 66 191 263 242 10 chr13 100136275 100136374 -19608524 + MER5A DNA MER1_type 68 189 0 * 2035 121 7 10 chr13 100136578 100136876 -19608022 + AluSx SINE Alu 1 297 -15 557 296 55 36 chr13 100136905 100137158 -19607740 + MIR SINE MIR 5 262 0 289 327 82 18 chr13 100137190 100137300 -19607598 - MIR SINE MIR -67 141 25 1215 127 0 22 chr13 100137806 100138016 -19606882 - AluSg/x SINE Alu 0 310 105 356 222 182 0 chr13 100139110 100139209 -19605689 - L2 LINE L2 -2 3311 3195 342 73 0 0 chr13 100139523 100139564 -19605334 + LTR56 LTR ERV1 348 388 -57 31 0 0 0 chr13 100139565 100139596 -19605302 + AT_rich Low_complexity Low_complexity 1 31 0 931 249 126 16 chr13 100139609 100139990 -19604908 - MER20B DNA MER1_type -1 782 360 1126 170 38 28 chr13 100139991 100140091 -19604807 - MER46A DNA MER2_type -1 235 134 291 192 216 32 chr13 100140091 100140216 -19604682 + MER46A DNA MER2_type 4 151 -85 498 233 253 55 chr13 100140221 100140513 -19604385 - MER20B DNA MER1_type -433 350 1 1567 189 119 47 chr13 100140950 100141420 -19603478 + LTR48B LTR ERV1 130 633 -11 2735 158 17 36 chr13 100142366 100142842 -19602056 + LTR24 LTR ERV1 1 467 0 2266 89 0 20 chr13 100142976 100143278 -19601620 + AluSx SINE Alu 1 296 -16 313 165 0 202 chr13 100143413 100143522 -19601376 - MER5A DNA MER1_type -84 105 19 222 228 18 0 chr13 100143883 100143940 -19600958 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 186 283 0 0 chr13 100144041 100144094 -19600804 + MIR SINE MIR 196 248 -14 1054 211 10 10 chr13 100144555 100144763 -19600135 + MER6B DNA MER2_type 3 210 0 253 345 111 26 chr13 100145227 100145453 -19599445 + ERVL LTR ERVL 1768 2012 -3473 405 277 206 7 chr13 100145854 100146009 -19598889 - MER5A DNA MER1_type 0 189 4 925 223 74 106 chr13 100146035 100146412 -19598486 - MLT1A1 LTR MaLR 0 365 1 369 298 19 0 chr13 100147574 100147678 -19597220 + ERVL LTR ERVL 4966 5071 -693 644 234 5 64 chr13 100149148 100149336 -19595562 + LTR16C LTR ERVL 315 491 0 1067 155 17 0 chr13 100149450 100149624 -19595274 + MLT1B LTR MaLR 1 177 -213 703 202 0 0 chr13 100149625 100149734 -19595164 + FLAM_C SINE Alu 2 110 -33 222 37 0 0 chr13 100149736 100149763 -19595135 + (TC)n Simple_repeat Simple_repeat 2 28 0 40 21 0 0 chr13 100149763 100149810 -19595088 + AT_rich Low_complexity Low_complexity 1 47 0 1034 201 46 14 chr13 100149810 100150029 -19594869 + MLT1B LTR MaLR 165 390 0 324 324 129 0 chr13 100150029 100150199 -19594699 - L3 LINE CR1 -138 1439 1248 1718 140 4 19 chr13 100150408 100150672 -19594226 + AluSx SINE Alu 1 260 -52 318 280 129 30 chr13 100150703 100150835 -19594063 - MIR3 SINE MIR -48 160 16 444 308 76 69 chr13 100150943 100151404 -19593494 - LTR16B LTR ERVL 0 464 1 427 225 155 74 chr13 100151430 100151457 -19593441 - L3 LINE CR1 -469 1108 1085 2448 69 0 0 chr13 100151457 100151746 -19593152 + AluY SINE Alu 1 289 -22 267 103 0 0 chr13 100151746 100151785 -19593113 + (TA)n Simple_repeat Simple_repeat 2 40 0 427 225 155 74 chr13 100151785 100152027 -19592871 - L3 LINE CR1 -491 1086 816 1057 242 85 35 chr13 100152836 100153340 -19591558 + LTR28 LTR ERV1 1 1232 -146 2020 157 47 22 chr13 100153395 100153759 -19591139 - THE1C LTR MaLR 0 375 3 5651 118 29 6 chr13 100153761 100154583 -19590315 - THE1C-int LTR MaLR 0 1580 740 2088 187 38 28 chr13 100154585 100155122 -19589776 + MLT2A2 LTR ERVL 1 546 -8 4065 119 120 5 chr13 100155125 100155790 -19589108 - THE1C-int LTR MaLR -837 743 2 2280 130 43 27 chr13 100155791 100156160 -19588738 - THE1C LTR MaLR 0 375 1 207 179 26 0 chr13 100156335 100156374 -19588524 + L2 LINE L2 3215 3254 -18 2142 84 7 4 chr13 100156497 100156772 -19588126 - AluSx SINE Alu -36 276 1 632 230 54 14 chr13 100157101 100157249 -19587649 + MIR SINE MIR 1 154 -108 816 98 0 0 chr13 100157292 100157394 -19587504 - AluSg/x SINE Alu -17 295 194 593 297 113 43 chr13 100157423 100157999 -19586899 + L1MC/D LINE L1 4589 5204 -942 2290 109 0 0 chr13 100158182 100158484 -19586414 + AluSg SINE Alu 3 304 -6 1589 236 120 46 chr13 100158558 100159100 -19585798 - MLT1G LTR MaLR -8 582 1 243 225 14 42 chr13 100159126 100159197 -19585701 + L1MC/D LINE L1 5564 5632 -2176 565 242 58 8 chr13 100159561 100159718 -19585180 - MLT1F LTR MaLR -7 535 399 2050 128 3 32 chr13 100160137 100160449 -19584449 - AluSx SINE Alu -9 303 1 22 0 0 0 chr13 100160450 100160472 -19584426 + AT_rich Low_complexity Low_complexity 1 22 0 563 239 30 116 chr13 100161235 100161503 -19583395 + MIR SINE MIR 18 262 0 23 54 0 0 chr13 100162750 100162787 -19582111 + AT_rich Low_complexity Low_complexity 1 37 0 1236 176 79 68 chr13 100162890 100163230 -19581668 + MER2 DNA MER2_type 1 344 0 1463 232 139 7 chr13 100163302 100163849 -19581049 + L1M4 LINE L1 4632 5250 -896 1117 117 26 0 chr13 100163965 100164119 -19580779 + AluSg/x SINE Alu 142 299 -11 2377 102 0 3 chr13 100164206 100164519 -19580379 + AluSp SINE Alu 1 312 -1 1110 71 6 60 chr13 100164519 100164687 -19580211 + Tigger1 DNA MER2_type 2080 2238 -180 1329 128 18 5 chr13 100164691 100164910 -19579988 - MER75B DNA T2_type -4 239 18 453 115 0 0 chr13 100164920 100164981 -19579917 - AluS SINE Alu -256 62 2 2458 274 36 45 chr13 100164985 100165736 -19579162 - L1MC4a LINE L1 -748 5398 5205 1974 168 0 13 chr13 100165736 100166052 -19578846 - AluJb SINE Alu 0 312 1 2458 274 36 45 chr13 100166052 100166819 -19578079 - L1MC4a LINE L1 -941 5205 4432 1154 208 29 18 chr13 100166829 100167108 -19577790 - LTR53 LTR ERVL -11 508 227 2612 50 0 0 chr13 100167221 100167522 -19577376 - AluY SINE Alu -10 301 1 240 151 38 0 chr13 100167536 100167589 -19577309 - L1 LINE L1 -1712 4434 4380 202 388 10 38 chr13 100168027 100168236 -19576662 - L2 LINE L2 -338 2976 2774 1329 106 6 6 chr13 100170480 100170660 -19574238 - L1PA8 LINE L1 -13 6159 5980 1285 173 93 17 chr13 100172478 100172778 -19572120 - MER33 DNA MER1_type -1 323 1 618 253 51 22 chr13 100173242 100173420 -19571478 + MIR SINE MIR 17 199 -63 219 114 0 0 chr13 100175323 100175358 -19569540 + (T)n Simple_repeat Simple_repeat 1 35 0 217 284 49 74 chr13 100175849 100175930 -19568968 + L2 LINE L2 3208 3286 -27 1807 169 3 7 chr13 100176288 100176583 -19568315 + AluJb SINE Alu 2 295 -17 276 270 16 0 chr13 100177212 100177275 -19567623 - L2 LINE L2 -3 3269 3206 323 308 75 25 chr13 100177479 100177599 -19567299 + L2 LINE L2 3188 3313 0 329 167 0 0 chr13 100177754 100177814 -19567084 + MER53 DNA DNA 16 75 -114 2214 124 33 30 chr13 100178044 100178407 -19566491 + THE1B LTR MaLR 1 364 0 7476 35 3 0 chr13 100178536 100179597 -19565301 - L1PA4 LINE L1 0 6155 5094 206 270 67 79 chr13 100180793 100180882 -19564016 + L3b LINE CR1 1400 1487 -96 2522 78 3 0 chr13 100181144 100181453 -19563445 + AluSp SINE Alu 1 310 -3 1008 258 44 69 chr13 100181937 100182040 -19562858 + L1MC4a LINE L1 5334 5438 -2370 1513 95 0 33 chr13 100182040 100182251 -19562647 - AluSg/x SINE Alu -20 292 89 2054 102 0 81 chr13 100182256 100182588 -19562310 - AluSg1 SINE Alu -4 305 1 1008 258 44 69 chr13 100182588 100182997 -19561901 + L1MC4a LINE L1 5442 5839 -1969 303 356 38 0 chr13 100183310 100183470 -19561428 + MLT1I LTR MaLR 93 258 -151 308 254 144 55 chr13 100183576 100183777 -19561121 + L1M4 LINE L1 2868 3086 -3060 228 267 9 38 chr13 100183943 100184048 -19560850 + GA-rich Low_complexity Low_complexity 2 103 0 2391 133 23 5 chr13 100185083 100185482 -19559416 - LTR57 LTR ERVL 0 411 6 1241 231 51 10 chr13 100185560 100185971 -19558927 - MER114 LTR ERV -220 428 1 501 159 0 0 chr13 100186050 100186138 -19558760 + L1ME1 LINE L1 5870 5957 -209 464 223 43 14 chr13 100186142 100186281 -19558617 + L1ME1 LINE L1 6019 6161 -5 2445 138 5 12 chr13 100186715 100187127 -19557771 - Tigger3b DNA MER2_type 0 1231 823 1839 116 21 82 chr13 100187126 100187187 -19557711 - THE1B LTR MaLR -8 356 293 * 2213 92 20 0 chr13 100187187 100187482 -19557416 - AluSg SINE Alu -9 301 1 1839 116 21 82 chr13 100187482 100187799 -19557099 - THE1B LTR MaLR -71 293 1 4194 126 40 39 chr13 100187799 100187840 -19557058 - Tigger3b DNA MER2_type -2203 825 786 1879 160 53 8 chr13 100187840 100188196 -19556702 - THE1C LTR MaLR 0 375 4 4194 126 40 39 chr13 100188196 100188223 -19556675 - Tigger3b DNA MER2_type -2242 786 761 2166 96 25 0 chr13 100188223 100188505 -19556393 + AluSg SINE Alu 1 289 -21 4194 126 40 39 chr13 100188505 100189047 -19555851 - Tigger3b DNA MER2_type -2267 761 210 2471 64 0 0 chr13 100189047 100189343 -19555555 - AluY SINE Alu -15 296 1 4194 126 40 39 chr13 100189343 100189554 -19555344 - Tigger3b DNA MER2_type -2818 210 1 189 0 0 0 chr13 100189590 100189611 -19555287 + (A)n Simple_repeat Simple_repeat 1 21 0 1906 141 0 53 chr13 100189621 100189940 -19554958 + AluJb SINE Alu 1 302 -10 477 225 2 11 chr13 100190339 100190477 -19554421 - MLT1D LTR MaLR -4 501 250 537 185 199 56 chr13 100190528 100190590 -19554308 - MLT1D LTR MaLR -257 248 196 2361 47 18 0 chr13 100190590 100190867 -19554031 - AluY SINE Alu -7 304 23 537 185 199 56 chr13 100190867 100191020 -19553878 - MLT1D LTR MaLR -309 196 2 1521 249 93 75 chr13 100191084 100191281 -19553617 - L2 LINE L2 -7 3306 3114 1856 154 14 0 chr13 100191281 100191567 -19553331 + AluJo SINE Alu 11 300 -12 1521 249 93 75 chr13 100191567 100192337 -19552561 - L2 LINE L2 -199 3114 2308 2601 102 16 5 chr13 100192337 100192708 -19552190 - THE1C LTR MaLR 0 375 1 1521 249 93 75 chr13 100192708 100192785 -19552113 - L2 LINE L2 -1005 2308 2234 1542 154 12 111 chr13 100192789 100193104 -19551794 + MLT1A2 LTR MaLR 1 267 -107 2125 143 55 24 chr13 100193104 100193523 -19551375 - MSTB1 LTR MaLR 0 432 1 1542 154 12 111 chr13 100193523 100193622 -19551276 + MLT1A2 LTR MaLR 267 374 0 390 264 101 0 chr13 100193622 100193751 -19551147 - L2 LINE L2 -1080 2234 2093 2266 138 13 13 chr13 100193925 100194315 -19550583 - MLT1B LTR MaLR 0 390 1 1700 177 35 0 chr13 100194789 100195077 -19549821 - AluJb SINE Alu -14 298 1 181 246 88 0 chr13 100195103 100195160 -19549738 + MIR SINE MIR 91 152 -110 314 252 84 71 chr13 100195923 100196078 -19548820 + MIR SINE MIR 64 220 -42 2206 114 0 7 chr13 100196089 100196396 -19548502 + AluSx SINE Alu 1 305 -7 2359 59 13 16 chr13 100196406 100196712 -19548186 + AluY SINE Alu 1 305 -6 897 126 0 0 chr13 100196729 100196848 -19548050 - AluSq/x SINE Alu -179 133 15 366 23 0 0 chr13 100197232 100197275 -19547623 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1656 133 4 0 chr13 100197285 100197525 -19547373 - AluSx SINE Alu -41 271 31 870 123 49 0 chr13 100198853 100198975 -19545923 - FLAM_C SINE Alu -15 128 1 181 229 0 21 chr13 100199082 100199130 -19545768 + L2 LINE L2 3267 3313 0 2318 88 3 0 chr13 100199697 100199994 -19544904 + AluSg SINE Alu 1 298 -12 247 289 114 35 chr13 100200478 100200592 -19544306 + MIR SINE MIR 18 140 -68 310 97 65 0 chr13 100200909 100200971 -19543927 - L1MDa LINE L1 -3914 2626 2561 2115 109 11 0 chr13 100202037 100202320 -19542578 - AluSx SINE Alu -26 286 1 872 198 104 135 chr13 100204965 100205122 -19539776 - MLT1C LTR MaLR -1 466 306 816 87 24 24 chr13 100205122 100205248 -19539650 - L1PA10 LINE L1 -2 6166 6041 872 198 104 135 chr13 100205248 100205571 -19539327 - MLT1C LTR MaLR -161 306 1 251 284 14 0 chr13 100206789 100206863 -19538035 - MIR SINE MIR -15 247 173 688 209 8 0 chr13 100207119 100207253 -19537645 - FLAM_C SINE Alu -8 135 1 371 291 73 9 chr13 100207455 100207565 -19537333 + L2 LINE L2 3196 3312 -1 1273 274 160 14 chr13 100207905 100208423 -19536475 - MLT1G1 LTR MaLR 0 595 2 392 245 66 51 chr13 100208994 100209190 -19535708 + LTR33A LTR ERVL 289 487 -36 221 266 63 91 chr13 100209389 100209532 -19535366 - MIR SINE MIR -37 225 87 1254 261 112 21 chr13 100210324 100210896 -19534002 + MLT1E3 LTR MaLR 1 624 0 3335 191 39 32 chr13 100214782 100214898 -19530000 + MER44D DNA MER2_type 1 115 -2372 2023 136 0 0 chr13 100214898 100215201 -19529697 + AluSx SINE Alu 5 307 0 3335 191 39 32 chr13 100215201 100215810 -19529088 + MER44D DNA MER2_type 115 604 -1 629 225 19 25 chr13 100218956 100219116 -19525782 + MER2 DNA MER2_type 2 160 -185 228 368 70 18 chr13 100220646 100220760 -19524138 + L2 LINE L2 2911 3030 -283 201 269 90 15 chr13 100220824 100220891 -19524007 + MER5A DNA MER1_type 41 112 -77 254 317 29 39 chr13 100220915 100221019 -19523879 + L2 LINE L2 3191 3293 -20 226 282 241 12 chr13 100221264 100221434 -19523464 - Charlie2b DNA MER1_type -1853 929 721 622 176 131 55 chr13 100221941 100222060 -19522838 - MER33 DNA MER1_type -2370 215 74 2363 67 0 7 chr13 100222060 100222358 -19522540 + AluSg SINE Alu 1 296 -14 622 176 131 55 chr13 100222358 100222437 -19522461 - MER33 DNA MER1_type -2511 74 2 450 310 153 9 chr13 100222640 100222856 -19522042 - MIR SINE MIR 0 262 16 965 105 0 0 chr13 100223388 100223521 -19521377 + FLAM_C SINE Alu 1 133 0 349 225 108 8 chr13 100223585 100223705 -19521193 - MIR SINE MIR -15 247 116 438 20 0 0 chr13 100224052 100224103 -19520795 + (CA)n Simple_repeat Simple_repeat 2 52 0 195 100 0 0 chr13 100224103 100224133 -19520765 + (CAG)n Simple_repeat Simple_repeat 3 32 0 1921 160 0 14 chr13 100225128 100225416 -19519482 + AluJb SINE Alu 1 284 -28 279 299 49 21 chr13 100225826 100225970 -19518928 - MLT1L LTR MaLR -338 277 130 576 155 203 22 chr13 100226423 100226655 -19518243 + LTR54B LTR ERV1 219 492 -6 216 136 23 23 chr13 100226659 100226703 -19518195 + GA-rich Low_complexity Low_complexity 4 47 0 416 217 78 0 chr13 100226739 100226854 -19518044 + L1M4 LINE L1 3638 3761 -2385 2280 95 10 0 chr13 100227157 100227463 -19517435 - AluSq SINE Alu -4 309 1 26 30 0 0 chr13 100227468 100227501 -19517397 + AT_rich Low_complexity Low_complexity 1 33 0 1327 142 86 124 chr13 100227559 100228025 -19516873 + LTR7 LTR ERV1 1 448 -2 5118 104 18 28 chr13 100228295 100229082 -19515816 - MER4E LTR ERV1 0 779 1 232 208 62 0 chr13 100230346 100230394 -19514504 - MLT1K LTR MaLR -398 190 140 582 256 48 24 chr13 100230511 100230679 -19514219 + MIR SINE MIR 67 238 -24 2437 65 0 13 chr13 100230748 100231055 -19513843 - AluY SINE Alu -8 303 1 1711 168 3 39 chr13 100231085 100231394 -19513504 - AluJo SINE Alu -14 298 1 2344 93 0 13 chr13 100231472 100231782 -19513116 - AluSx SINE Alu -6 306 1 1200 168 70 4 chr13 100232124 100232368 -19512530 + L1PB4 LINE L1 5895 6154 -2 477 274 0 0 chr13 100232678 100233003 -19511895 + (CA)n Simple_repeat Simple_repeat 1 325 0 1748 181 31 3 chr13 100235764 100236057 -19508841 + AluJo SINE Alu 1 301 -11 2166 93 31 10 chr13 100236284 100236573 -19508325 - AluSp SINE Alu -18 295 1 2439 69 0 10 chr13 100237667 100237970 -19506928 + AluSx SINE Alu 1 300 -12 1476 173 29 4 chr13 100238177 100238489 -19506409 - AluJo SINE Alu 0 319 1 2186 101 20 16 chr13 100238935 100239241 -19505657 + AluSx SINE Alu 1 307 -5 439 252 92 23 chr13 100239318 100239449 -19505449 + MIR SINE MIR 13 152 -110 23 33 0 0 chr13 100239811 100239841 -19505057 + AT_rich Low_complexity Low_complexity 1 30 0 263 283 48 83 chr13 100240074 100240219 -19504679 + MIR SINE MIR 5 144 -118 200 259 103 0 chr13 100240484 100240542 -19504356 - L3 LINE CR1 -200 1377 1314 612 353 29 23 chr13 100240574 100240920 -19503978 - L3 LINE CR1 -367 1210 863 2099 142 16 22 chr13 100241266 100241385 -19503513 + MLT1A1 LTR MaLR 1 119 -246 2304 107 25 25 chr13 100241385 100241749 -19503149 + THE1B LTR MaLR 1 364 0 2099 142 16 22 chr13 100241749 100241996 -19502902 + MLT1A1 LTR MaLR 119 365 0 2519 101 8 0 chr13 100242384 100242762 -19502136 - L1MA3 LINE L1 -295 6010 5630 2341 95 0 0 chr13 100242974 100243278 -19501620 - AluSx SINE Alu 0 312 9 5627 287 90 28 chr13 100243391 100244656 -19500242 - L2 LINE L2 -318 2995 1810 305 23 0 23 chr13 100244656 100244699 -19500199 + (TAA)n Simple_repeat Simple_repeat 2 43 0 5627 287 90 28 chr13 100244699 100244837 -19500061 - L2 LINE L2 -1503 1810 1682 2121 97 0 58 chr13 100244837 100245147 -19499751 + AluSc SINE Alu 1 292 -17 5627 287 90 28 chr13 100245147 100245430 -19499468 - L2 LINE L2 -1631 1682 1418 2640 94 13 0 chr13 100245430 100245822 -19499076 + L1MA2 LINE L1 5908 6304 0 5627 287 90 28 chr13 100245822 100246269 -19498629 - L2 LINE L2 -1895 1418 1000 2317 183 36 39 chr13 100246269 100246789 -19498109 + MLT2B1 LTR ERVL 2 520 0 5627 287 90 28 chr13 100246789 100246935 -19497963 - L2 LINE L2 -2313 1000 568 716 238 119 67 chr13 100247073 100247503 -19497395 + MLT1C LTR MaLR 1 618 -8 5118 113 63 23 chr13 100249593 100250477 -19494421 - MER11C LTR ERVK -14 1057 138 340 253 120 33 chr13 100352835 100352985 -19391913 - MIR SINE MIR -12 250 88 764 156 0 30 chr13 100353024 100353159 -19391739 - FLAM_C SINE Alu -12 131 1 559 266 126 14 chr13 100353954 100354168 -19390730 + MIR SINE MIR 21 258 -4 271 250 9 9 chr13 100355370 100355482 -19389416 + (TA)n Simple_repeat Simple_repeat 1 112 0 207 223 43 85 chr13 100356076 100356170 -19388728 + MIR SINE MIR 122 211 -51 526 309 90 44 chr13 100356542 100357070 -19387828 - L2 LINE L2 -19 3294 2472 1792 135 18 92 chr13 100357197 100357269 -19387629 - L1MB3 LINE L1 0 6183 6107 2349 103 0 0 chr13 100357269 100357571 -19387327 - AluSc SINE Alu -7 302 1 1792 135 18 92 chr13 100357571 100357890 -19387008 - L1MB3 LINE L1 -76 6107 5821 200 325 97 26 chr13 100359355 100359469 -19385429 + MIR SINE MIR 21 142 -66 205 167 42 21 chr13 100360594 100360642 -19384256 + GA-rich Low_complexity Low_complexity 3 51 0 711 259 52 21 chr13 100360669 100360862 -19384036 + MIR SINE MIR 47 245 -17 192 77 0 0 chr13 100361282 100361308 -19383590 + (TG)n Simple_repeat Simple_repeat 2 27 0 2085 131 0 16 chr13 100361357 100361671 -19383227 + AluSx SINE Alu 1 309 -3 382 295 71 0 chr13 100361913 100362025 -19382873 + L2 LINE L2 3153 3272 0 732 260 51 44 chr13 100363250 100363704 -19381194 - L1MC5 LINE L1 -46 7915 7459 4645 176 33 18 chr13 100363706 100364743 -19380155 - L1PA14 LINE L1 0 6161 5108 1288 225 42 49 chr13 100364740 100365234 -19379664 - L1MC5 LINE L1 -467 7494 7004 * 2088 123 23 3 chr13 100365353 100365653 -19379245 + AluSx SINE Alu 1 306 -6 488 269 143 58 chr13 100365656 100366385 -19378513 + HAL1 LINE L1 958 1748 -759 636 224 0 24 chr13 100366949 100367074 -19377824 + FLAM_A SINE Alu 2 123 -10 258 222 44 11 chr13 100367122 100367212 -19377686 + HAL1 LINE L1 2245 2337 -170 180 0 0 0 chr13 100367606 100367626 -19377272 + (CA)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr13 100367758 100367782 -19377116 + (T)n Simple_repeat Simple_repeat 1 24 0 364 284 32 0 chr13 100368143 100368238 -19376660 + MIR SINE MIR 74 171 -91 * 604 274 64 34 chr13 100368233 100368499 -19376399 + L2 LINE L2 3037 3310 -3 1517 258 79 5 chr13 100369006 100369437 -19375461 + MER119 DNA MER1_type 3 465 -118 592 208 38 6 chr13 100369421 100369580 -19375318 + MER119 DNA MER1_type 302 465 -118 * 502 152 29 9 chr13 100369562 100369667 -19375231 + MER119 DNA MER1_type 300 406 -177 * 679 186 102 6 chr13 100369805 100369982 -19374916 + MER119 DNA MER1_type 390 583 0 379 329 68 0 chr13 100371229 100371375 -19373523 + MIR SINE MIR 34 189 -73 1918 137 10 0 chr13 100371742 100372035 -19372863 - 7SLRNA srpRNA srpRNA -4 316 21 293 247 52 21 chr13 100372384 100372481 -19372417 + MIR3 SINE MIR 107 206 -2 827 169 18 24 chr13 100372669 100372835 -19372063 + L1PB4 LINE L1 5991 6155 -1 1654 166 46 0 chr13 100372899 100373183 -19371715 - AluJb SINE Alu -15 297 1 284 240 130 27 chr13 100374292 100374438 -19370460 - MIR SINE MIR 0 262 102 2625 97 8 5 chr13 100374488 100374860 -19370038 - THE1C LTR MaLR -2 373 1 946 154 0 0 chr13 100374895 100375038 -19369860 + FLAM_C SINE Alu 1 143 0 246 98 0 24 chr13 100375295 100375336 -19369562 + MER67C LTR ERV1 350 389 -321 841 146 14 56 chr13 100375395 100375585 -19369313 + FRAM SINE Alu 11 194 0 374 254 93 0 chr13 100375603 100375721 -19369177 + MER67D LTR ERV1 385 513 -1 727 280 59 38 chr13 100375783 100376104 -19368794 + MLT1I LTR MaLR 60 388 -21 334 203 42 59 chr13 100376398 100376516 -19368382 - Charlie2a DNA MER1_type -2 2860 2745 1027 199 35 19 chr13 100376519 100376780 -19368118 - Charlie2a DNA MER1_type -1854 1008 744 633 253 64 10 chr13 100376774 100376976 -19367922 - Charlie2a DNA MER1_type -2346 436 224 * 1596 133 8 20 chr13 100377036 100377291 -19367607 - AluJo SINE Alu -16 296 45 2538 65 0 0 chr13 100378078 100378384 -19366514 + AluY SINE Alu 1 306 -5 386 305 59 13 chr13 100379340 100379576 -19365322 - L1MEd LINE L1 -4966 1153 907 226 283 19 0 chr13 100380053 100380106 -19364792 - L2 LINE L2 -11 3302 3249 199 263 112 34 chr13 100380128 100380333 -19364565 + L2 LINE L2 2171 2391 -923 240 100 0 0 chr13 100380350 100380390 -19364508 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 804 283 197 26 chr13 100380392 100380819 -19364079 - L2 LINE L2 -7 3306 2807 445 372 98 3 chr13 100380886 100381182 -19363716 + L2 LINE L2 2438 2761 -553 352 357 110 63 chr13 100381230 100381611 -19363287 + L2 LINE L2 2874 3272 0 375 220 420 0 chr13 100381913 100382063 -19362835 + MIR SINE MIR 23 235 -27 1251 194 4 0 chr13 100382158 100382416 -19362482 - L1PA16 LINE L1 -17 6149 5891 926 160 32 64 chr13 100382416 100382458 -19362440 - L1PB4 LINE L1 -329 5827 5785 180 0 0 0 chr13 100382458 100382478 -19362420 + (TA)n Simple_repeat Simple_repeat 2 21 0 926 160 32 64 chr13 100382478 100382654 -19362244 - L1PB4 LINE L1 -371 5785 5616 21 36 0 0 chr13 100382684 100382712 -19362186 + AT_rich Low_complexity Low_complexity 1 28 0 271 264 56 48 chr13 100383844 100383969 -19360929 - MIR SINE MIR 0 262 137 246 357 40 16 chr13 100385041 100385167 -19359731 + L2 LINE L2 3184 3312 -1 239 313 53 69 chr13 100385522 100385653 -19359245 - MIR SINE MIR -49 213 85 759 297 30 9 chr13 100386157 100386389 -19358509 - MIR SINE MIR -16 246 10 1588 94 18 13 chr13 100387573 100387797 -19357101 - AluSg/x SINE Alu -7 303 79 409 302 31 8 chr13 100389115 100389244 -19355654 - MIR SINE MIR -64 198 67 748 258 48 22 chr13 100389947 100390176 -19354722 + MIR SINE MIR 23 257 -5 313 317 120 6 chr13 100390217 100390384 -19354514 - L2 LINE L2 -1254 2060 1875 497 303 25 25 chr13 100391183 100391464 -19353434 - L1ME LINE L1 -342 5779 5499 23 33 0 0 chr13 100392085 100392115 -19352783 + AT_rich Low_complexity Low_complexity 1 30 0 512 296 69 14 chr13 100392115 100392331 -19352567 - MIR SINE MIR 0 262 35 214 376 62 35 chr13 100393269 100393527 -19351371 - L2 LINE L2 -338 2976 2712 2487 56 0 0 chr13 100393612 100393937 -19350961 + AluY SINE Alu 1 311 0 1683 206 22 68 chr13 100394183 100394672 -19350226 + MLT1C LTR MaLR 1 467 0 277 203 14 27 chr13 100394689 100394763 -19350135 - L1ME4a LINE L1 -79 6042 5970 2016 154 0 0 chr13 100394827 100395126 -19349772 - AluSx SINE Alu -12 300 2 764 181 102 169 chr13 100395755 100396080 -19348818 + MER52A LTR ERV1 668 970 -785 617 258 103 24 chr13 100396071 100396284 -19348614 + MER52A LTR ERV1 1096 1325 -430 * 4746 140 48 25 chr13 100397953 100398440 -19346458 - MER6 DNA MER2_type 0 865 348 279 0 0 0 chr13 100398440 100398471 -19346427 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 4746 140 48 25 chr13 100398471 100398828 -19346070 - MER6 DNA MER2_type -517 348 1 8852 29 1 4 chr13 100399743 100401458 -19343440 + L1PA4 LINE L1 4303 6011 -144 275 366 155 24 chr13 100401559 100401810 -19343088 + L2 LINE L2 2601 2884 -430 27 0 0 0 chr13 100402820 100402847 -19342051 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chr13 100402913 100402970 -19341928 + AT_rich Low_complexity Low_complexity 1 57 0 5044 179 42 1 chr13 100403162 100404414 -19340484 - L1P4 LINE L1 -634 5532 4234 5574 202 37 19 chr13 100404514 100405507 -19339391 - L1 LINE L1 -987 5159 4131 745 29 19 19 chr13 100405507 100405611 -19339287 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 5574 202 37 19 chr13 100405611 100406009 -19338889 - L1 LINE L1 -2015 4131 3742 282 303 34 11 chr13 100406185 100406274 -19338624 + L2 LINE L2 3168 3258 -14 222 250 0 0 chr13 100406275 100406323 -19338575 + (TA)n Simple_repeat Simple_repeat 2 49 0 29 28 0 0 chr13 100406331 100406367 -19338531 + AT_rich Low_complexity Low_complexity 1 36 0 225 258 123 84 chr13 100406383 100406686 -19338212 - L1MC4 LINE L1 -41 8001 7711 1269 223 18 11 chr13 100406686 100406964 -19337934 + AluJo SINE Alu 3 282 -30 258 32 0 0 chr13 100406967 100406998 -19337900 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 225 258 123 84 chr13 100406998 100407287 -19337611 - L1MC4 LINE L1 -332 7710 7272 2676 62 54 5 chr13 100407651 100408024 -19336874 + LTR1 LTR ERV1 394 784 -1 2126 131 28 6 chr13 100408024 100408376 -19336522 + L1PA15 LINE L1 5801 6160 -5 277 266 156 0 chr13 100408467 100408595 -19336303 - L1MC4a LINE L1 -1467 6341 6194 2041 123 7 7 chr13 100408615 100408907 -19335991 - AluSx SINE Alu -16 296 5 3326 249 7 8 chr13 100408912 100409754 -19335144 - L1P LINE L1 -1491 4655 3815 998 141 5 11 chr13 100409884 100410052 -19334846 + L1PA6 LINE L1 5896 6062 -92 * 3764 106 39 30 chr13 100410051 100410186 -19334712 + L1PBa LINE L1 1890 2022 -4841 1807 162 0 0 chr13 100410186 100410464 -19334434 + AluSx SINE Alu 33 310 -2 2134 117 3 13 chr13 100410469 100410769 -19334129 + AluSx SINE Alu 1 297 -15 3764 106 39 30 chr13 100410769 100411289 -19333609 + L1PBa LINE L1 2025 2557 -4306 1946 142 3 3 chr13 100412003 100412313 -19332585 - AluJb SINE Alu -2 310 1 226 232 18 0 chr13 100413309 100413365 -19331533 + L1MCc LINE L1 1281 1337 -5086 1207 176 118 16 chr13 100413935 100414007 -19330891 + AluJo SINE Alu 18 81 -231 1961 104 0 15 chr13 100414007 100414275 -19330623 - AluSg SINE Alu -46 264 1 1207 176 118 16 chr13 100414275 100414457 -19330441 + AluJo SINE Alu 81 298 -14 1446 171 74 34 chr13 100415071 100415421 -19329477 + THE1B LTR MaLR 1 364 0 189 0 0 0 chr13 100415701 100415722 -19329176 + (A)n Simple_repeat Simple_repeat 1 21 0 759 279 165 34 chr13 100416915 100417302 -19327596 - MLT1E LTR MaLR -139 454 17 1584 179 61 10 chr13 100418391 100418516 -19326382 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr13 100418516 100418537 -19326361 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1584 179 61 10 chr13 100418537 100418708 -19326190 + AluJb SINE Alu 118 312 0 518 285 207 0 chr13 100419642 100419835 -19325063 - MIR SINE MIR -2 260 28 190 376 83 23 chr13 100420197 100420330 -19324568 + MIR3 SINE MIR 5 145 -63 1055 209 24 40 chr13 100420448 100420701 -19324197 - AluJo SINE Alu -18 294 46 295 226 36 12 chr13 100421108 100421192 -19323706 + MARNA DNA Mariner 270 355 -231 462 254 203 33 chr13 100421420 100421750 -19323148 + MLT1J LTR MaLR 111 496 -15 1279 223 27 60 chr13 100421897 100422300 -19322598 - MLT1B LTR MaLR 0 390 1 661 224 62 19 chr13 100425547 100425822 -19319076 + MLT2F LTR ERVL 8 342 -321 297 328 66 80 chr13 100428401 100428764 -19316134 - L3 LINE CR1 -1 1576 1219 * 456 330 152 5 chr13 100428731 100428928 -19315970 - MIR SINE MIR 0 262 37 1380 294 135 8 chr13 100429459 100430176 -19314722 + L2 LINE L2 2228 3031 -282 1510 168 90 70 chr13 100430187 100430575 -19314323 + MSTD LTR MaLR 1 396 0 1269 245 14 50 chr13 100430579 100430938 -19313960 + MLT1A1 LTR MaLR 20 365 0 336 311 101 42 chr13 100430960 100431079 -19313819 + L2 LINE L2 3173 3298 -15 21 0 0 0 chr13 100431970 100431991 -19312907 + AT_rich Low_complexity Low_complexity 1 21 0 31 68 0 0 chr13 100432612 100432671 -19312227 + AT_rich Low_complexity Low_complexity 1 59 0 324 233 259 9 chr13 100433118 100433234 -19311664 - MER5A DNA MER1_type 0 189 45 677 238 111 0 chr13 100433234 100433406 -19311492 + MER3 DNA MER1_type 19 209 0 1005 314 85 30 chr13 100433419 100433948 -19310950 + L2 LINE L2 835 1392 -1922 347 238 164 57 chr13 100433986 100434108 -19310790 + L2 LINE L2 3136 3270 -2 682 224 107 0 chr13 100435174 100435370 -19309528 - L1ME3A LINE L1 -233 5937 5721 588 287 110 24 chr13 100435376 100435942 -19308956 - L1ME3A LINE L1 -543 5619 5015 * 6797 24 0 1 chr13 100435913 100436708 -19308190 - L1PA3 LINE L1 -2 6153 5360 6706 32 1 1 chr13 100436883 100438316 -19306582 - L1PA3 LINE L1 -86 6069 4638 837 243 169 13 chr13 100438316 100438694 -19306204 - L1ME3A LINE L1 -1094 5052 4616 272 272 64 12 chr13 100438708 100438881 -19306017 - L1ME3A LINE L1 -1742 4404 4223 1115 259 56 10 chr13 100438892 100439302 -19305596 + L1M4c LINE L1 1140 1568 -4816 9375 145 45 21 chr13 100439307 100440994 -19303904 + L1PA6 LINE L1 2 1728 -4418 4426 14 1 2 chr13 100440987 100441729 -19303169 - L1PA2 LINE L1 -537 5618 4877 * 4502 25 0 0 chr13 100441729 100442286 -19302612 + L1PA2 LINE L1 5615 6171 0 15196 73 5 1 chr13 100442300 100444381 -19300517 + L1PA6 LINE L1 1692 3779 -2367 23 0 0 0 chr13 100444567 100444590 -19300308 + AT_rich Low_complexity Low_complexity 1 23 0 11945 60 10 18 chr13 100444623 100446943 -19297955 + L1PA6 LINE L1 3841 6153 -1 1691 142 6 84 chr13 100447183 100447515 -19297383 + AluSx SINE Alu 5 310 -2 771 297 71 76 chr13 100447688 100448165 -19296733 + L2 LINE L2 2778 3252 -61 10115 210 35 45 chr13 100448277 100451379 -19293519 + L1PA11 LINE L1 833 4744 -2840 11035 143 35 9 chr13 100451383 100454048 -19290850 + L1PA11 LINE L1 4900 7612 0 490 204 18 25 chr13 100454083 100454212 -19290686 + L1PA15-16 LINE L1 6 123 -6740 4803 125 29 44 chr13 100454266 100455152 -19289746 + L1PA16 LINE L1 5280 6152 -14 1732 168 3 16 chr13 100455226 100455562 -19289336 + AluJb SINE Alu 1 312 0 1623 187 0 25 chr13 100455762 100456045 -19288853 - AluJo SINE Alu -36 276 1 1394 110 5 0 chr13 100456052 100456243 -19288655 - AluSg/x SINE Alu -9 301 110 335 183 169 35 chr13 100456498 100456640 -19288258 + L1ME4a LINE L1 5959 6119 -2 288 0 0 0 chr13 100457080 100457112 -19287786 + (T)n Simple_repeat Simple_repeat 1 32 0 1940 249 56 23 chr13 100457217 100457731 -19287167 + MLT1F LTR MaLR 2 532 -10 21 36 0 0 chr13 100458486 100458514 -19286384 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr13 100458544 100458569 -19286329 + AT_rich Low_complexity Low_complexity 1 25 0 210 295 0 0 chr13 100458604 100458665 -19286233 + (CATA)n Simple_repeat Simple_repeat 2 62 0 490 333 82 38 chr13 100458897 100459164 -19285734 - L3 LINE CR1 -1 1576 1298 210 71 0 0 chr13 100459167 100459195 -19285703 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 221 343 0 0 chr13 100459376 100459443 -19285455 - L3 LINE CR1 -530 1047 981 201 74 0 0 chr13 100460149 100460176 -19284722 + (T)n Simple_repeat Simple_repeat 1 27 0 186 118 0 0 chr13 100460313 100460347 -19284551 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 8351 72 16 131 chr13 100460348 100461881 -19283017 - SVA Other Other -3 1383 26 27 0 0 0 chr13 100461947 100461974 -19282924 + AT_rich Low_complexity Low_complexity 1 27 0 5236 168 39 8 chr13 100461977 100463368 -19281530 - L1PA16 LINE L1 -9 6157 4724 3419 141 213 16 chr13 100463372 100464059 -19280839 - LTR12 LTR ERV1 0 826 5 568 178 136 11 chr13 100464075 100464266 -19280632 - pTR5 LTR ERV1 -1094 1344 1130 8248 220 32 79 chr13 100464765 100465898 -19279000 - L1PA15-16 LINE L1 -804 6045 4860 375 23 0 0 chr13 100465898 100465942 -19278956 + (TG)n Simple_repeat Simple_repeat 1 44 0 8248 220 32 79 chr13 100465942 100467261 -19277637 - L1PA15-16 LINE L1 -1989 4860 3750 2322 75 7 10 chr13 100467261 100467566 -19277332 - AluY SINE Alu -5 306 3 8248 220 32 79 chr13 100467566 100468037 -19276861 - L1PA15-16 LINE L1 -3099 3750 3258 1004 132 13 0 chr13 100468042 100468201 -19276697 + L1PA15-16 LINE L1 2774 2934 -3915 1112 188 16 0 chr13 100468201 100468393 -19276505 - AluJo SINE Alu -117 195 1 259 0 105 0 chr13 100468394 100468432 -19276466 - L1PA15-16 LINE L1 -4700 2149 2108 3146 154 71 10 chr13 100468432 100469419 -19275479 - L1PA15-16 LINE L1 -3584 3265 2141 1726 181 3 7 chr13 100469419 100469712 -19275186 - AluJo SINE Alu -20 292 1 3146 154 71 10 chr13 100469712 100469845 -19275053 - L1PA15-16 LINE L1 -4708 2141 2017 3355 151 23 0 chr13 100469845 100470368 -19274530 - L1PA15-16 LINE L1 -5277 1572 1038 883 231 43 0 chr13 100470843 100471029 -19273869 - MER58A DNA MER1_type -1 223 30 332 315 172 68 chr13 100471109 100471448 -19273450 - L2 LINE L2 0 3272 2879 2333 128 31 14 chr13 100471448 100471806 -19273092 + THE1B LTR MaLR 1 364 0 332 315 172 68 chr13 100471806 100471891 -19273007 - L2 LINE L2 -393 2879 2804 674 260 28 11 chr13 100471985 100472166 -19272732 - MIR SINE MIR -78 184 1 554 316 72 49 chr13 100472264 100472929 -19271969 + L2 LINE L2 2386 3064 -208 413 281 97 49 chr13 100472941 100473126 -19271772 - L1PA15-16 LINE L1 -1132 2078 1885 2216 122 50 10 chr13 100473132 100473533 -19271365 - L1MA8 LINE L1 -13 6278 5862 1656 184 13 10 chr13 100474028 100474337 -19270561 - AluJb SINE Alu 0 312 3 889 158 0 0 chr13 100474344 100474477 -19270421 - FLAM_C SINE Alu -10 133 1 25 0 0 0 chr13 100475281 100475306 -19269592 + AT_rich Low_complexity Low_complexity 1 25 0 400 288 89 74 chr13 100475645 100475807 -19269091 - L1ME LINE L1 -350 5812 5654 468 0 0 0 chr13 100475807 100475859 -19269039 + (TG)n Simple_repeat Simple_repeat 2 53 0 400 288 89 74 chr13 100475859 100476089 -19268809 - L1ME LINE L1 -508 5654 5414 451 295 170 25 chr13 100476221 100476939 -19267959 - L1ME LINE L1 -832 5314 4493 307 250 40 30 chr13 100477059 100477159 -19267739 + L2 LINE L2 3193 3293 -20 709 289 105 42 chr13 100477181 100477941 -19266957 - L1ME LINE L1 -1794 4352 3545 397 229 112 90 chr13 100477947 100478135 -19266763 + MLT1G LTR MaLR 5 196 -394 266 252 105 35 chr13 100478415 100478558 -19266340 - L1ME LINE L1 -3525 2621 2469 1589 178 17 17 chr13 100479958 100480256 -19264642 - AluJo SINE Alu -14 298 1 209 304 25 38 chr13 100480361 100480440 -19264458 + MIR SINE MIR 74 151 -111 1913 104 7 28 chr13 100481034 100481322 -19263576 - AluSg SINE Alu -10 300 19 315 0 0 0 chr13 100481803 100481838 -19263060 + (CA)n Simple_repeat Simple_repeat 2 36 0 2547 94 33 0 chr13 100482383 100482746 -19262152 + THE1C LTR MaLR 1 375 0 180 341 47 0 chr13 100482774 100482859 -19262039 + MIR SINE MIR 62 150 -112 23 0 0 0 chr13 100483432 100483455 -19261443 + AT_rich Low_complexity Low_complexity 1 23 0 219 300 0 0 chr13 100484124 100484204 -19260694 + A-rich Low_complexity Low_complexity 1 80 0 260 292 92 46 chr13 100484220 100484569 -19260329 + L1MDb LINE L1 1057 1421 -4988 911 196 122 0 chr13 100484739 100484984 -19259914 + L1M4 LINE L1 1194 1468 -5074 1947 108 8 0 chr13 100485393 100485651 -19259247 + AluSg SINE Alu 32 291 -19 213 235 0 0 chr13 100485776 100485827 -19259071 + A-rich Low_complexity Low_complexity 1 51 0 1296 137 0 5 chr13 100485920 100486117 -19258781 + MER2 DNA MER2_type 8 203 -142 391 240 0 0 chr13 100486143 100486218 -19258680 + MER2 DNA MER2_type 268 342 -3 330 315 109 6 chr13 100487270 100487435 -19257463 + L1MC4 LINE L1 6760 6941 -1101 1332 144 87 25 chr13 100487574 100487839 -19257059 + MER46B DNA MER2_type 1 157 -79 3312 113 13 58 chr13 100487839 100488479 -19256419 + MER4B LTR ERV1 1 779 0 621 82 24 0 chr13 100488481 100488566 -19256332 + MER46B DNA MER2_type 150 236 0 561 237 74 0 chr13 100489484 100489619 -19255279 + MIR SINE MIR 105 249 -13 1058 179 15 0 chr13 100489682 100489878 -19255020 + L1MB4 LINE L1 4677 4875 -1271 * 5013 145 39 19 chr13 100489875 100490923 -19253975 + L1MB4 LINE L1 5108 6179 -1 2346 81 0 0 chr13 100491739 100492034 -19252864 - AluY SINE Alu -16 295 1 14306 170 67 13 chr13 100492197 100496354 -19248544 + L1MA4A LINE L1 1 3931 -3074 2219 110 51 23 chr13 100496354 100496708 -19248190 - THE1B LTR MaLR 0 364 1 14306 170 67 13 chr13 100496708 100498243 -19246655 + L1MA4A LINE L1 3931 5381 -1624 7372 27 8 4 chr13 100498243 100499337 -19245561 + L1PA3 LINE L1 5059 6155 0 14306 170 67 13 chr13 100499337 100500292 -19244606 + L1MA4A LINE L1 5381 7005 0 351 271 57 23 chr13 100500296 100500473 -19244425 - L1ME4a LINE L1 -1 6120 5938 2100 112 3 7 chr13 100500737 100501032 -19243866 - AluSc SINE Alu -15 294 1 2260 103 0 3 chr13 100501050 100501352 -19243546 - AluSc SINE Alu -8 301 1 1852 196 97 5 chr13 100501981 100502373 -19242525 + MSTA LTR MaLR 1 428 0 1178 247 121 74 chr13 100502433 100503011 -19241887 + MER77 LTR ERV1 1 605 0 234 369 23 39 chr13 100503033 100503163 -19241735 - L2 LINE L2 -211 3061 2934 22 35 0 0 chr13 100504279 100504308 -19240590 + AT_rich Low_complexity Low_complexity 1 29 0 640 223 79 0 chr13 100506308 100506447 -19238451 - MER58A DNA MER1_type -1 223 74 2188 107 3 0 chr13 100506469 100506767 -19238131 + AluSq SINE Alu 1 299 -14 30 0 0 0 chr13 100506767 100506797 -19238101 + AT_rich Low_complexity Low_complexity 1 30 0 325 254 0 0 chr13 100506800 100506863 -19238035 - MER58A DNA MER1_type -161 63 1 305 232 43 0 chr13 100507147 100507216 -19237682 - L2 LINE L2 -2 3270 3199 546 267 123 21 chr13 100507278 100507514 -19237384 + MIR SINE MIR 3 262 0 2066 124 3 0 chr13 100508382 100508672 -19236226 + AluSx SINE Alu 3 293 -19 452 350 64 26 chr13 100508899 100509165 -19235733 + L1MEd LINE L1 345 620 -5499 4322 140 60 9 chr13 100509401 100510199 -19234699 - L1MA4 LINE L1 -1 6299 5461 6594 65 35 2 chr13 100510199 100511783 -19233115 + L1PA8 LINE L1 4556 6171 -1 2012 179 55 0 chr13 100511801 100512315 -19232583 - L1MA4 LINE L1 -743 5403 4944 260 236 34 22 chr13 100513043 100513132 -19231766 - L1MC4a LINE L1 -1802 6006 5917 238 264 28 14 chr13 100513190 100513262 -19231636 - L1MC4a LINE L1 -2369 5439 5367 5558 90 66 8 chr13 100513277 100514189 -19230709 + L1PB1 LINE L1 5187 6149 -2 1881 88 0 8 chr13 100514331 100514580 -19230318 + AluSx SINE Alu 39 285 -27 2635 26 0 0 chr13 100514762 100515068 -19229830 + AluY SINE Alu 1 306 -5 2709 139 41 67 chr13 100515748 100516303 -19228595 + LTR9 LTR ERV1 1 541 -71 283 291 13 0 chr13 100516636 100516715 -19228183 + MLT1J LTR MaLR 95 174 -337 206 179 0 0 chr13 100516893 100516932 -19227966 - MIR SINE MIR -35 227 189 1543 210 3 3 chr13 100517917 100518207 -19226691 - AluJo SINE Alu -22 290 1 24 32 0 0 chr13 100518325 100518356 -19226542 + AT_rich Low_complexity Low_complexity 1 31 0 188 358 78 25 chr13 100520659 100520863 -19224035 + L2 LINE L2 2260 2474 -840 1099 286 131 13 chr13 100521397 100521848 -19223050 + LTR33 LTR ERVL 5 508 -13 801 199 20 25 chr13 100522582 100522783 -19222115 + L1MB8 LINE L1 5952 6151 -27 5537 58 7 1 chr13 100524313 100525018 -19219880 - L1PA7 LINE L1 -11 6143 5435 1748 88 7 51 chr13 100525489 100525763 -19219135 + AluSg SINE Alu 37 298 -12 1922 201 26 0 chr13 100525770 100526198 -19218700 - L1MA4 LINE L1 -1490 4656 4218 * 5271 107 55 2 chr13 100526183 100526985 -19217913 + L1PA16 LINE L1 5323 6166 0 22 35 0 0 chr13 100527376 100527405 -19217493 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr13 100527975 100528023 -19216875 + AT_rich Low_complexity Low_complexity 1 48 0 35 41 0 0 chr13 100528076 100528125 -19216773 + AT_rich Low_complexity Low_complexity 1 49 0 365 250 81 20 chr13 100528703 100528851 -19216047 + L1ME4a LINE L1 5239 5395 -751 254 320 68 27 chr13 100528959 100529178 -19215720 + L1ME4a LINE L1 5452 5679 -442 305 264 113 56 chr13 100529276 100529507 -19215391 + L1ME4a LINE L1 5876 6119 -2 1950 147 20 0 chr13 100529796 100530088 -19214810 + AluSx SINE Alu 1 298 -14 250 210 123 0 chr13 100530725 100530806 -19214092 - L2 LINE L2 0 3313 3223 2142 119 10 3 chr13 100530943 100531238 -19213660 + AluSg SINE Alu 1 297 -13 238 362 85 27 chr13 100531387 100531611 -19213287 - L2 LINE L2 -414 2900 2664 28 48 0 0 chr13 100533105 100533147 -19211751 + AT_rich Low_complexity Low_complexity 1 42 0 3516 42 2 20 chr13 100534671 100535127 -19209771 + LTR7 LTR ERV1 1 448 -2 2026 159 40 5 chr13 100535348 100535720 -19209178 + Tigger2 DNA MER2_type 2334 2718 0 377 255 192 39 chr13 100535907 100536115 -19208783 + L2 LINE L2 3072 3311 -2 1968 208 49 25 chr13 100536352 100536799 -19208099 + MER70A LTR ERVL 1 458 -14 1264 280 72 33 chr13 100536958 100537473 -19207425 + MLT1H LTR MaLR 1 535 -14 24 53 0 0 chr13 100537754 100537792 -19207106 + AT_rich Low_complexity Low_complexity 1 38 0 844 130 0 19 chr13 100537792 100537953 -19206945 - L1MA4 LINE L1 -1 6299 6142 707 157 48 24 chr13 100537957 100538123 -19206775 + L1MA4 LINE L1 5949 6118 -182 * 1090 0 0 88 chr13 100538121 100538268 -19206630 - L1PA3 LINE L1 -25 6130 5997 271 208 58 58 chr13 100538858 100538978 -19205920 + L1MCc LINE L1 258 377 -6046 181 305 63 32 chr13 100539333 100539428 -19205470 - L2 LINE L2 -2849 465 368 706 251 95 68 chr13 100539491 100539921 -19204977 + L1MCc LINE L1 1178 1610 -5041 2149 124 3 0 chr13 100539921 100540219 -19204679 + AluSx SINE Alu 1 299 -13 706 251 95 68 chr13 100540219 100540377 -19204521 + L1MCc LINE L1 1610 1762 -4889 648 158 47 47 chr13 100540362 100540489 -19204409 + L1 LINE L1 356 482 -4846 * 4726 189 92 19 chr13 100540474 100541898 -19203000 + L1 LINE L1 3784 5467 -861 * 6645 142 40 18 chr13 100541897 100543095 -19201803 + L1P4 LINE L1 4089 5343 -822 2264 104 0 0 chr13 100543095 100543393 -19201505 + AluSc SINE Alu 1 298 -11 6645 142 40 18 chr13 100543393 100543871 -19201027 + L1P4 LINE L1 5343 5809 -356 971 56 32 0 chr13 100543871 100543996 -19200902 + L1PA10 LINE L1 6037 6165 -3 2779 229 57 7 chr13 100544008 100544963 -19199935 + L1ME LINE L1 4025 5301 -845 1399 232 12 6 chr13 100544972 100545295 -19199603 + L1ME LINE L1 5371 5695 -471 648 315 61 13 chr13 100545370 100545909 -19198989 + L1M4 LINE L1 4484 5048 -1098 286 263 32 0 chr13 100546072 100546167 -19198731 + L1M LINE L1 5257 5354 -767 21 71 0 0 chr13 100546180 100546222 -19198676 + AT_rich Low_complexity Low_complexity 1 42 0 189 254 91 0 chr13 100546248 100546303 -19198595 - L2 LINE L2 -60 3253 3194 207 100 0 0 chr13 100546310 100546340 -19198558 + (TG)n Simple_repeat Simple_repeat 1 30 0 296 312 137 10 chr13 100547534 100547739 -19197159 - MIR SINE MIR -6 256 26 2470 75 0 0 chr13 100548565 100548870 -19196028 + AluY SINE Alu 1 305 -6 24 0 0 0 chr13 100549145 100549169 -19195729 + AT_rich Low_complexity Low_complexity 1 24 0 6595 206 52 4 chr13 100549510 100550863 -19194035 + MSTB-int LTR MaLR 234 1651 0 386 143 0 0 chr13 100550863 100550919 -19193979 + MSTB LTR MaLR 1 56 -370 1431 148 14 5 chr13 100550922 100551145 -19193753 + MSTB LTR MaLR 202 426 0 1881 181 0 0 chr13 100551805 100552114 -19192784 + AluJo SINE Alu 4 312 0 23 0 0 0 chr13 100552518 100552541 -19192357 + AT_rich Low_complexity Low_complexity 1 23 0 1618 232 39 20 chr13 100552715 100553124 -19191774 - LTR40c LTR ERVL 0 465 49 2343 262 34 33 chr13 100553140 100553874 -19191024 - HERVL40 LTR ERVL -2134 3396 2662 1874 179 52 57 chr13 100554396 100554854 -19190044 - LTR40c LTR ERVL -9 456 1 328 348 72 5 chr13 100555145 100555366 -19189532 + L1M4 LINE L1 3713 3948 -2198 236 299 70 63 chr13 100555391 100555722 -19189176 + L1M4 LINE L1 4502 4834 -1312 23 68 0 0 chr13 100556083 100556127 -19188771 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr13 100556517 100556541 -19188357 + AT_rich Low_complexity Low_complexity 1 24 0 791 244 76 23 chr13 100558492 100558781 -19186117 + LTR40b LTR ERVL 173 462 0 771 302 43 4 chr13 100558795 100559030 -19185868 + HERVL40 LTR ERVL 19 262 -5268 677 192 8 8 chr13 100559174 100559304 -19185594 + LTR40b LTR ERVL 333 462 0 368 319 81 59 chr13 100559304 100559715 -19185183 + L1MEc LINE L1 962 1430 -1146 185 0 40 0 chr13 100559737 100559762 -19185136 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 185 277 108 74 chr13 100559983 100560131 -19184767 + L2 LINE L2 3161 3313 0 2828 22 0 0 chr13 100560225 100560539 -19184359 - AluYb8 SINE Alu -4 314 1 22 56 0 0 chr13 100560662 100560698 -19184200 + AT_rich Low_complexity Low_complexity 1 36 0 656 327 108 37 chr13 100561367 100561856 -19183042 + L2 LINE L2 1864 2387 -927 2123 88 0 24 chr13 100562431 100562728 -19182170 + AluY SINE Alu 1 290 -21 2050 122 3 0 chr13 100562854 100563148 -19181750 - AluSx SINE Alu -11 301 7 1491 160 0 11 chr13 100564539 100564807 -19180091 + L1MC1 LINE L1 6069 6333 0 1151 199 42 63 chr13 100564902 100565188 -19179710 - AluJo SINE Alu -30 282 3 238 317 0 0 chr13 100566581 100566641 -19178257 + MARNA DNA Mariner 58 117 -469 1183 123 22 0 chr13 100566641 100566820 -19178078 + L1PA11 LINE L1 4421 4603 -1543 7924 175 58 74 chr13 100566820 100568588 -19176310 + MER52A LTR ERV1 1 1740 -15 6258 97 15 2 chr13 100568615 100570148 -19174750 + L1PA11 LINE L1 4600 6173 -1 790 220 31 0 chr13 100570329 100570488 -19174410 - FRAM SINE Alu -13 163 1 2058 122 0 0 chr13 100570786 100571065 -19173833 - AluSg SINE Alu -31 279 1 368 293 91 40 chr13 100571544 100571742 -19173156 + L3 LINE CR1 1323 1530 -47 505 242 17 8 chr13 100572056 100572176 -19172722 - MLT1C-int LTR MaLR -587 784 664 397 197 0 0 chr13 100572177 100572248 -19172650 - MLT1C LTR MaLR -50 417 347 4920 208 36 69 chr13 100572310 100573724 -19171174 - MLT1C-int LTR MaLR -4 1367 1 1350 203 130 28 chr13 100573724 100574148 -19170750 - MLT1C LTR MaLR 0 467 1 326 121 50 192 chr13 100574148 100574247 -19170651 - Tigger5 DNA MER2_type -2 2321 2237 305 200 0 0 chr13 100574257 100574312 -19170586 - Tigger5 DNA MER2_type -2268 55 1 13663 171 72 9 chr13 100574577 100580053 -19164845 + L1PB1 LINE L1 37 5860 -1002 7869 118 1 2 chr13 100580051 100581165 -19163733 + L1PA5 LINE L1 1 1113 -5033 * 25903 52 9 1 chr13 100581171 100585056 -19159842 + L1PA5 LINE L1 2254 6152 -2 6536 77 30 5 chr13 100585061 100586050 -19158848 + L1PB1 LINE L1 5857 6867 0 462 208 51 84 chr13 100587363 100587501 -19157397 + MER5B DNA MER1_type 3 135 -43 2833 10 0 0 chr13 100587501 100587804 -19157094 + AluYa5 SINE Alu 1 303 -8 462 208 51 84 chr13 100587804 100587843 -19157055 + MER5B DNA MER1_type 135 174 -4 485 204 159 51 chr13 100587855 100588012 -19156886 - MER5A DNA MER1_type -2 187 14 342 237 237 0 chr13 100588029 100588168 -19156730 + MER5A DNA MER1_type 12 183 -6 848 192 0 6 chr13 100588212 100588384 -19156514 + AluJb SINE Alu 132 302 -10 225 361 36 0 chr13 100589356 100589439 -19155459 + MIR3 SINE MIR 111 196 -12 24 0 0 0 chr13 100589805 100589829 -19155069 + AT_rich Low_complexity Low_complexity 1 24 0 2040 134 3 0 chr13 100589956 100590248 -19154650 + AluSx SINE Alu 3 295 -17 183 156 0 0 chr13 100590262 100590294 -19154604 + T-rich Low_complexity Low_complexity 1 32 0 339 86 69 0 chr13 100590349 100590407 -19154491 - AluJb SINE Alu 0 302 241 1021 201 0 6 chr13 100590409 100590588 -19154310 - AluJb SINE Alu -132 180 3 23 0 0 0 chr13 100590932 100590955 -19153943 + AT_rich Low_complexity Low_complexity 1 23 0 4756 129 42 3 chr13 100591031 100591694 -19153204 - L1MB2 LINE L1 -2 6169 5473 369 0 0 0 chr13 100591694 100591735 -19153163 + (TG)n Simple_repeat Simple_repeat 2 42 0 4756 129 42 3 chr13 100591735 100591802 -19153096 - L1MB2 LINE L1 -698 5473 5410 264 311 0 0 chr13 100591802 100591892 -19153006 + MARNA DNA Mariner 143 232 -354 419 285 118 36 chr13 100591984 100592205 -19152693 - MLT1J LTR MaLR -49 462 224 1323 160 29 75 chr13 100594109 100594415 -19150483 + AluJo SINE Alu 1 292 -20 39 22 0 0 chr13 100594419 100594465 -19150433 + AT_rich Low_complexity Low_complexity 1 46 0 404 252 0 16 chr13 100595290 100595417 -19149481 - L1ME3A LINE L1 -3 6167 6043 2193 169 20 27 chr13 100595712 100596156 -19148742 + L1MA4A LINE L1 4620 5060 -1086 1250 168 8 12 chr13 100596127 100596377 -19148521 + L1MA4A LINE L1 5869 6117 -186 * 331 142 18 142 chr13 100596387 100596500 -19148398 + L1MA4A LINE L1 6182 6280 -23 372 204 136 23 chr13 100596559 100596691 -19148207 - L2 LINE L2 -841 2473 2327 243 286 195 57 chr13 100596693 100596990 -19147908 - L2 LINE L2 -738 2576 2239 336 236 76 49 chr13 100597734 100597869 -19147029 + L1MC4 LINE L1 6955 7096 -946 1325 204 124 0 chr13 100597869 100598143 -19146755 + AluJo SINE Alu 5 312 0 449 108 0 14 chr13 100598152 100598226 -19146672 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 2646 194 32 16 chr13 100598726 100599230 -19145668 - MLT2B2 LTR ERVL -3 512 1 2386 103 0 3 chr13 100600650 100600952 -19143946 + AluSc SINE Alu 1 301 -8 24 32 0 0 chr13 100601258 100601289 -19143609 + AT_rich Low_complexity Low_complexity 1 31 0 1605 222 65 48 chr13 100601412 100601598 -19143300 + MLT1C LTR MaLR 1 182 -285 2379 105 47 41 chr13 100601598 100601960 -19142938 - THE1B LTR MaLR 0 364 1 1605 222 65 48 chr13 100601960 100602232 -19142666 + MLT1C LTR MaLR 182 467 0 286 115 0 39 chr13 100602751 100602803 -19142095 - MIR SINE MIR -130 132 83 1895 147 10 19 chr13 100602986 100603298 -19141600 - AluJb SINE Alu 0 312 4 1536 174 50 18 chr13 100603546 100603828 -19141070 + AluJo SINE Alu 1 291 -21 26 30 0 0 chr13 100604858 100604891 -19140007 + AT_rich Low_complexity Low_complexity 1 33 0 216 198 9 52 chr13 100605897 100606013 -19138885 + CT-rich Low_complexity Low_complexity 2 112 0 294 29 0 0 chr13 100606352 100606387 -19138511 + (TG)n Simple_repeat Simple_repeat 2 36 0 229 358 97 55 chr13 100606486 100606888 -19138010 + L2 LINE L2 2853 3271 -1 1542 177 22 18 chr13 100607108 100607385 -19137513 - AluJo SINE Alu -15 297 20 450 251 30 18 chr13 100607766 100607933 -19136965 + L1ME3A LINE L1 5810 5978 -192 2213 106 0 0 chr13 100608057 100608450 -19136448 - AluSx SINE Alu 0 393 1 1933 169 36 15 chr13 100608553 100608706 -19136192 + MER2 DNA MER2_type 1 149 -195 2196 105 0 3 chr13 100608706 100609000 -19135898 - AluSq SINE Alu -20 293 1 1933 169 36 15 chr13 100609000 100609183 -19135715 + MER2 DNA MER2_type 149 344 0 1011 302 136 36 chr13 100610080 100611081 -19133817 - L2 LINE L2 0 3313 2217 221 341 57 24 chr13 100611205 100611328 -19133570 - L2 LINE L2 0 3272 3146 21 0 0 0 chr13 100611357 100611378 -19133520 + AT_rich Low_complexity Low_complexity 1 21 0 873 207 53 0 chr13 100611605 100611774 -19133124 - MER5B DNA MER1_type 0 178 1 1715 252 45 22 chr13 100612503 100613042 -19131856 - MER90 LTR ERV1 -20 555 5 1544 242 10 21 chr13 100613416 100613797 -19131101 - MLT1E2 LTR MaLR -5 617 212 588 178 0 0 chr13 100613809 100613899 -19130999 - 5S rRNA rRNA -31 90 1 376 192 85 12 chr13 100613921 100614110 -19130788 - MLT1E1 LTR MaLR -396 258 1 384 40 0 0 chr13 100614399 100614449 -19130449 + (TG)n Simple_repeat Simple_repeat 2 51 0 215 174 22 0 chr13 100615485 100615531 -19129367 + (TA)n Simple_repeat Simple_repeat 2 48 0 226 259 0 19 chr13 100615798 100615852 -19129046 - L2 LINE L2 -9 3263 3211 323 352 73 9 chr13 100616344 100616563 -19128335 + L2 LINE L2 2394 2626 -688 189 152 0 0 chr13 100616579 100616612 -19128286 - L2 LINE L2 -4 3309 3277 * 664 303 32 66 chr13 100616606 100617015 -19127883 + L2 LINE L2 2197 2591 -723 277 207 86 0 chr13 100616986 100617044 -19127854 + MIR SINE MIR 31 93 -169 * 1646 80 0 0 chr13 100617472 100617684 -19127214 - AluY SINE Alu -2 309 98 1185 34 14 7 chr13 100617923 100618070 -19126828 - AluY SINE Alu -12 299 152 983 242 19 11 chr13 100618151 100618411 -19126487 + MER20B DNA MER1_type 522 783 0 352 327 57 6 chr13 100618917 100619076 -19125822 + L2 LINE L2 2564 2730 -584 257 365 54 27 chr13 100619162 100619310 -19125588 + L2 LINE L2 2910 3061 -211 1286 251 123 17 chr13 100619406 100619820 -19125078 + L2 LINE L2 2402 2859 -455 362 304 22 43 chr13 100619809 100619947 -19124951 + L2 LINE L2 3138 3272 0 * 344 374 32 0 chr13 100619945 100620100 -19124798 + L2 LINE L2 3153 3312 -1 * 25 0 0 0 chr13 100621015 100621040 -19123858 + AT_rich Low_complexity Low_complexity 1 25 0 315 230 20 40 chr13 100621897 100621997 -19122901 + MIR SINE MIR 100 197 -65 377 267 124 87 chr13 100623847 100624307 -19120591 + L1M2 LINE L1 510 986 -5863 182 37 37 0 chr13 100624377 100624404 -19120494 + (CCG)n Simple_repeat Simple_repeat 3 30 0 302 236 107 96 chr13 100624508 100624686 -19120212 + L1M2 LINE L1 840 1019 -5830 183 129 0 0 chr13 100624727 100624758 -19120140 + (GGA)n Simple_repeat Simple_repeat 1 31 0 209 304 80 36 chr13 100625814 100625926 -19118972 - L2 LINE L2 -4 3309 3193 21 0 0 0 chr13 100627141 100627162 -19117736 + AT_rich Low_complexity Low_complexity 1 21 0 773 250 80 5 chr13 100627632 100627832 -19117066 + MIR SINE MIR 6 220 -42 310 264 94 9 chr13 100628575 100628681 -19116217 - MIR3 SINE MIR -5 203 89 202 170 21 85 chr13 100628781 100628828 -19116070 - L2 LINE L2 -25 3247 3204 339 325 143 33 chr13 100629017 100629380 -19115518 - MLT1K LTR MaLR 0 588 186 360 0 0 0 chr13 100629431 100629471 -19115427 + (TG)n Simple_repeat Simple_repeat 2 41 0 985 277 107 11 chr13 100629655 100630009 -19114889 + L3 LINE CR1 1153 1540 -37 180 369 0 0 chr13 100631376 100631441 -19113457 + MIR SINE MIR 196 260 -2 802 153 0 8 chr13 100632106 100632237 -19112661 + FLAM_C SINE Alu 1 130 -3 713 283 74 13 chr13 100632242 100632472 -19112426 + MIR SINE MIR 19 262 0 2182 96 7 0 chr13 100632524 100632805 -19112093 - AluSx SINE Alu -25 287 5 633 279 138 69 chr13 100633913 100634364 -19110534 - LTR33 LTR ERVL -14 507 26 1178 129 0 0 chr13 100635901 100636072 -19108826 + AluSg/x SINE Alu 135 305 -7 23 0 0 0 chr13 100636586 100636609 -19108289 + AT_rich Low_complexity Low_complexity 1 23 0 191 349 12 24 chr13 100636838 100636921 -19107977 + MIR SINE MIR 2 83 -125 * 401 338 46 20 chr13 100636910 100637061 -19107837 + L2 LINE L2 3158 3312 -1 2317 224 35 12 chr13 100638012 100638521 -19106377 + MER74A LTR ERVL 25 545 -13 204 125 0 0 chr13 100638634 100638666 -19106232 + (A)n Simple_repeat Simple_repeat 1 32 0 2159 131 3 0 chr13 100638936 100639241 -19105657 + AluSx SINE Alu 1 306 -6 1014 159 211 109 chr13 100639706 100640109 -19104789 + MLT1F1 LTR MaLR 2 445 -122 1892 296 83 22 chr13 100640219 100641026 -19103872 - L2 LINE L2 -1808 1506 651 5705 138 30 43 chr13 100641199 100642285 -19102613 + MER11C LTR ERVK 1 1071 0 322 180 0 0 chr13 100642520 100642570 -19102328 + (TCTCTG)n Simple_repeat Simple_repeat 2 51 0 231 355 53 0 chr13 100643433 100643509 -19101389 - L2 LINE L2 -39 3233 3154 2414 120 15 92 chr13 100643608 100644010 -19100888 - MSTB LTR MaLR -4 422 58 2195 71 43 0 chr13 100644010 100644291 -19100607 - AluY SINE Alu -18 293 1 2414 120 15 92 chr13 100644291 100644345 -19100553 - MSTB LTR MaLR -368 58 1 26 0 0 0 chr13 100644642 100644668 -19100230 + AT_rich Low_complexity Low_complexity 1 26 0 368 336 164 13 chr13 100645265 100645715 -19099183 + L1ME4a LINE L1 4329 4846 -1300 1526 179 61 0 chr13 100646018 100646138 -19098760 + AluJo SINE Alu 1 112 -200 402 39 0 0 chr13 100646138 100646190 -19098708 + (TA)n Simple_repeat Simple_repeat 2 53 0 1526 179 61 0 chr13 100646190 100646348 -19098550 + AluJo SINE Alu 112 296 -16 566 266 95 78 chr13 100647015 100647534 -19097364 + L1ME4a LINE L1 5309 5834 -287 1615 193 7 0 chr13 100647716 100648017 -19096881 - AluJo SINE Alu -9 303 1 880 232 37 15 chr13 100648045 100648278 -19096620 + MIR SINE MIR 25 260 -2 5856 81 8 4 chr13 100648839 100649633 -19095265 - L1PA8A LINE L1 0 6131 5335 213 321 25 25 chr13 100650146 100650227 -19094671 + L2 LINE L2 3187 3267 -5 316 273 45 36 chr13 100650538 100650648 -19094250 + MIR SINE MIR 64 174 -88 2125 161 7 42 chr13 100651363 100651440 -19093458 + MLT1B LTR MaLR 1 79 -311 2122 127 0 7 chr13 100651440 100651739 -19093159 - AluSx SINE Alu -15 297 1 2125 161 7 42 chr13 100651739 100652065 -19092833 + MLT1B LTR MaLR 79 390 0 396 0 0 0 chr13 100652213 100652257 -19092641 + (TA)n Simple_repeat Simple_repeat 2 45 0 2947 6 0 0 chr13 100652258 100652576 -19092322 - AluYb8 SINE Alu 0 318 1 30 77 0 0 chr13 100652773 100652838 -19092060 + AT_rich Low_complexity Low_complexity 1 65 0 307 184 250 37 chr13 100653243 100653379 -19091519 + MIR SINE MIR 29 193 -69 1752 198 89 19 chr13 100653488 100653917 -19090981 + MLT1C LTR MaLR 7 465 -2 306 292 119 31 chr13 100653932 100654192 -19090706 + L1ME4a LINE L1 5802 6084 -37 638 264 115 21 chr13 100655581 100655677 -19089221 - MIR SINE MIR -3 259 173 339 25 0 0 chr13 100655677 100655717 -19089181 + (TTA)n Simple_repeat Simple_repeat 2 41 0 638 264 115 21 chr13 100655717 100655855 -19089043 - MIR SINE MIR -89 173 3 26 0 0 0 chr13 100659263 100659289 -19085609 + AT_rich Low_complexity Low_complexity 1 26 0 1646 45 0 0 chr13 100659346 100659545 -19085353 - L1PA3 LINE L1 0 6155 5957 2146 138 24 32 chr13 100659956 100660332 -19084566 - MER83C LTR ERV1 0 373 1 528 100 56 33 chr13 100660650 100660740 -19084158 + MLT1A2 LTR MaLR 5 96 -278 1910 153 24 32 chr13 100660804 100661144 -19083754 - MER1B DNA MER1_type 0 337 1 274 316 127 32 chr13 100661491 100661649 -19083249 + MER5A DNA MER1_type 1 173 -16 1972 131 10 16 chr13 100662403 100662717 -19082181 - AluSq SINE Alu -1 312 1 1324 217 92 14 chr13 100663200 100663559 -19081339 + MLT1B LTR MaLR 1 387 -3 1647 129 47 28 chr13 100664998 100665315 -19079583 - L1MA8 LINE L1 -10 6281 5959 3933 132 19 82 chr13 100665525 100665688 -19079210 - L1MA8 LINE L1 -337 5954 5782 459 0 0 0 chr13 100665688 100665739 -19079159 + (CA)n Simple_repeat Simple_repeat 2 52 0 3933 132 19 82 chr13 100665739 100665964 -19078934 - L1MA8 LINE L1 -509 5782 5544 1985 155 3 7 chr13 100665964 100666268 -19078630 - AluJb SINE Alu -5 307 5 3933 132 19 82 chr13 100666268 100666707 -19078191 - L1MA8 LINE L1 -747 5544 5079 2128 98 14 0 chr13 100666707 100666992 -19077906 - AluSq SINE Alu -24 289 1 2063 124 0 0 chr13 100666999 100667289 -19077609 - AluSx SINE Alu -22 290 1 3933 132 19 82 chr13 100667289 100667749 -19077149 - L1MA8 LINE L1 -1218 5073 4753 257 304 12 12 chr13 100667909 100668081 -19076817 + T-rich Low_complexity Low_complexity 1 172 0 508 258 137 16 chr13 100668975 100669165 -19075733 + L3 LINE CR1 1146 1358 -219 2184 139 109 26 chr13 100669272 100669695 -19075203 - LTR32 LTR ERVL 0 471 14 2009 163 74 20 chr13 100669807 100670213 -19074685 - MSTA LTR MaLR 0 428 1 262 211 132 0 chr13 100670213 100670249 -19074649 - L1MA9 LINE L1 -42 6270 6240 333 0 0 0 chr13 100670249 100670286 -19074612 + (TA)n Simple_repeat Simple_repeat 2 38 0 262 211 132 0 chr13 100670286 100670325 -19074573 - L1MA9 LINE L1 -72 6240 6185 813 247 200 17 chr13 100670592 100670718 -19074180 - L1ME3 LINE L1 -4 6158 6056 195 42 0 0 chr13 100670718 100670742 -19074156 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 813 247 200 17 chr13 100670742 100670975 -19073923 - L1ME3 LINE L1 -106 6056 5733 2118 100 7 0 chr13 100671003 100671283 -19073615 - AluSg SINE Alu -15 295 14 320 175 10 39 chr13 100671928 100672031 -19072867 + (TA)n Simple_repeat Simple_repeat 2 101 0 398 248 23 39 chr13 100672031 100672055 -19072843 - L1MA10 LINE L1 -32 6302 6279 291 320 23 46 chr13 100672055 100672230 -19072668 - L1ME1 LINE L1 -44 6122 5952 499 238 155 22 chr13 100672263 100672586 -19072312 + L1ME4a LINE L1 5756 6121 0 234 0 0 0 chr13 100673108 100673134 -19071764 + (A)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr13 100673168 100673196 -19071702 + AT_rich Low_complexity Low_complexity 1 28 0 11033 144 36 19 chr13 100673465 100674911 -19069987 + Tigger2 DNA MER2_type 1 1491 -1227 1435 133 108 39 chr13 100674911 100675190 -19069708 - AluJo SINE Alu -14 298 1 11033 144 36 19 chr13 100675190 100675681 -19069217 + Tigger2 DNA MER2_type 1491 1972 -746 32 43 0 0 chr13 100676937 100676983 -19067915 + AT_rich Low_complexity Low_complexity 1 46 0 191 103 26 0 chr13 100676992 100677031 -19067867 + (TA)n Simple_repeat Simple_repeat 2 41 0 191 358 238 7 chr13 100677595 100677746 -19067152 + MIR SINE MIR 2 187 -75 34 0 0 0 chr13 100678174 100678208 -19066690 + AT_rich Low_complexity Low_complexity 1 34 0 1167 34 7 0 chr13 100678208 100678355 -19066543 - L1PA4 LINE L1 -2 6153 6006 26 64 0 0 chr13 100678938 100678985 -19065913 + AT_rich Low_complexity Low_complexity 1 47 0 4169 163 55 10 chr13 100679974 100680782 -19064116 - L1PA16 LINE L1 0 6166 5323 1898 201 26 0 chr13 100680767 100681195 -19063703 + L1 LINE L1 4218 4656 -1490 * 1865 87 0 51 chr13 100681202 100681478 -19063420 - AluSg SINE Alu -12 298 37 1385 169 63 63 chr13 100681977 100682326 -19062572 - L1MA9 LINE L1 -39 6273 5925 535 274 12 37 chr13 100683260 100683424 -19061474 + MIR SINE MIR 97 256 -6 284 282 82 36 chr13 100683942 100684052 -19060846 - MIR SINE MIR -77 185 71 2362 71 96 0 chr13 100684616 100684940 -19059958 - THE1A LTR MaLR 0 355 1 9511 102 88 0 chr13 100684940 100686392 -19058506 - THE1A-int LTR MaLR 0 1580 1 2277 95 89 0 chr13 100686392 100686718 -19058180 - THE1A LTR MaLR 0 355 1 30 0 0 0 chr13 100686925 100686955 -19057943 + AT_rich Low_complexity Low_complexity 1 30 0 921 254 93 50 chr13 100687694 100688223 -19056675 + L2 LINE L2 2738 3272 -41 321 140 0 0 chr13 100690472 100690529 -19054369 + (CTCA)n Simple_repeat Simple_repeat 1 57 0 1936 191 3 8 chr13 100690628 100690994 -19053904 - MLT1A1 LTR MaLR -1 364 1 232 309 21 0 chr13 100691449 100691543 -19053355 + L1MC/D LINE L1 5721 5816 -1992 17303 148 10 34 chr13 100691652 100695488 -19049410 + L1PA11 LINE L1 2307 6170 -4 261 273 20 10 chr13 100695776 100695875 -19049023 - L1MA9 LINE L1 -540 5794 5695 240 321 105 42 chr13 100696616 100696806 -19048092 - MIR3 SINE MIR -6 202 1 553 296 143 35 chr13 100697120 100697545 -19047353 + L2 LINE L2 2842 3312 -1 2113 152 0 13 chr13 100698040 100698375 -19046523 - AluSx SINE Alu 0 331 1 2045 130 3 3 chr13 100698415 100698700 -19046198 - AluSx SINE Alu -14 298 14 186 138 0 0 chr13 100699747 100699776 -19045122 + L2 LINE L2 3270 3298 -15 496 173 0 0 chr13 100700041 100700122 -19044776 + AluJ/FLAM SINE Alu 3 83 -229 489 132 0 0 chr13 100701009 100701085 -19043813 - AluS SINE Alu -13 298 223 375 108 0 31 chr13 100701678 100701743 -19043155 + THE1C LTR MaLR 1 63 -312 22 0 0 0 chr13 100701932 100701954 -19042944 + AT_rich Low_complexity Low_complexity 1 22 0 238 29 0 0 chr13 100702069 100702104 -19042794 - L1MA3 LINE L1 0 6305 6271 352 255 149 12 chr13 100703224 100703385 -19041513 + MIR SINE MIR 5 187 -75 668 267 138 9 chr13 100703455 100703680 -19041218 + MIR SINE MIR 9 262 0 265 279 118 46 chr13 100703733 100703970 -19040928 - L1ME4a LINE L1 -211 5910 5657 264 293 101 14 chr13 100704692 100704879 -19040019 - MIR SINE MIR -21 241 37 565 251 58 97 chr13 100704933 100705045 -19039853 - MIR SINE MIR -12 250 135 198 0 0 0 chr13 100705045 100705067 -19039831 + (TCCA)n Simple_repeat Simple_repeat 3 24 0 565 251 58 97 chr13 100705067 100705213 -19039685 - MIR SINE MIR -127 135 2 317 267 33 17 chr13 100705251 100705371 -19039527 + L1MCa LINE L1 1995 2116 -4310 484 266 0 0 chr13 100705393 100705487 -19039411 + L2 LINE L2 3220 3313 0 511 236 149 14 chr13 100705665 100705940 -19038958 - LTR33 LTR ERVL -207 314 3 681 185 49 0 chr13 100706680 100706842 -19038056 - L1MA8 LINE L1 -5 6286 6117 2415 80 0 3 chr13 100707162 100707463 -19037435 - AluSc SINE Alu -9 300 1 346 254 100 18 chr13 100707512 100707622 -19037276 - L2 LINE L2 -1 3312 3194 263 200 0 0 chr13 100708389 100708444 -19036454 + LTR33 LTR ERVL 465 519 -2 22 70 0 0 chr13 100708449 100708492 -19036406 + AT_rich Low_complexity Low_complexity 1 43 0 250 259 133 44 chr13 100708817 100708975 -19035923 + L2 LINE L2 3139 3310 -3 290 202 0 36 chr13 100711468 100711552 -19033346 + C-rich Low_complexity Low_complexity 3 83 0 1589 170 47 4 chr13 100711863 100712140 -19032758 - AluJb SINE Alu -20 292 4 2136 115 3 0 chr13 100713767 100714073 -19030825 + AluSp SINE Alu 1 307 0 1282 210 15 37 chr13 100715599 100715798 -19029100 - MER58B DNA MER1_type -2102 318 127 1850 142 3 27 chr13 100715798 100716094 -19028804 - AluSx SINE Alu -23 289 1 1282 210 15 37 chr13 100716094 100716218 -19028680 - MER58B DNA MER1_type -2293 127 2 418 308 228 50 chr13 100716795 100716857 -19028041 - L2 LINE L2 0 3272 3222 1593 223 11 29 chr13 100716857 100717234 -19027664 - MLT1A2 LTR MaLR -4 370 1 418 308 228 50 chr13 100717234 100718216 -19026682 - L2 LINE L2 -50 3222 2047 210 371 49 14 chr13 100718235 100718378 -19026520 - L2 LINE L2 -1557 1757 1610 399 210 30 50 chr13 100718759 100718848 -19026050 - MER5A DNA MER1_type -77 112 24 2078 148 135 5 chr13 100718848 100719227 -19025671 - MSTA LTR MaLR 0 428 1 198 349 0 0 chr13 100719467 100719530 -19025368 - L2 LINE L2 -2099 1215 1153 2233 91 47 0 chr13 100721656 100721952 -19022946 + AluSx SINE Alu 1 310 -2 2723 86 11 3 chr13 100721952 100722311 -19022587 - THE1B LTR MaLR 0 364 3 587 322 65 6 chr13 100722344 100722695 -19022203 + L1ME4a LINE L1 5517 5888 -233 317 284 87 27 chr13 100723106 100723289 -19021609 + L2 LINE L2 444 637 -2677 1540 236 73 59 chr13 100723338 100723884 -19021014 - MLT2B3 LTR ERVL 0 554 1 1950 300 148 51 chr13 100723980 100724390 -19020508 + L2 LINE L2 970 1339 -1975 2099 124 68 11 chr13 100724390 100724745 -19020153 - THE1C LTR MaLR 0 375 1 1950 300 148 51 chr13 100724745 100725914 -19018984 + L2 LINE L2 1339 2701 -613 567 277 68 61 chr13 100726033 100726343 -19018555 + L2 LINE L2 3002 3313 0 643 162 0 49 chr13 100727833 100727975 -19016923 + L1MA7 LINE L1 5978 6112 -179 263 321 88 34 chr13 100728017 100728324 -19016574 - L2 LINE L2 -213 3059 2701 2431 187 59 16 chr13 100728606 100729302 -19015596 + Charlie2 DNA MER1_type 1855 2580 -282 2608 52 0 0 chr13 100729304 100729613 -19015285 - AluY SINE Alu -2 309 1 1252 152 16 16 chr13 100729654 100729749 -19015149 - L1MB1 LINE L1 -125 6043 5949 1821 148 27 17 chr13 100729749 100730047 -19014851 - AluJb SINE Alu -11 301 1 1252 152 16 16 chr13 100730047 100730194 -19014704 - L1MB1 LINE L1 -218 5950 5801 1589 156 9 38 chr13 100730195 100730510 -19014388 + L1MB1 LINE L1 5486 5791 -543 899 193 108 19 chr13 100730510 100730779 -19014119 - MER33 DNA MER1_type -30 294 2 22 70 0 0 chr13 100733578 100733621 -19011277 + AT_rich Low_complexity Low_complexity 1 43 0 223 337 24 12 chr13 100733861 100733944 -19010954 + L3b LINE CR1 1341 1424 -159 2105 150 19 29 chr13 100734812 100735191 -19009707 + THE1C LTR MaLR 1 375 0 207 232 0 0 chr13 100735195 100735251 -19009647 + CT-rich Low_complexity Low_complexity 3 58 0 1996 180 91 5 chr13 100737210 100737649 -19007249 + L1MB4 LINE L1 5701 6177 -3 1128 232 96 32 chr13 100737794 100738233 -19006665 + MLT1C LTR MaLR 1 467 0 5968 215 56 11 chr13 100738279 100739840 -19005058 - L1 LINE L1 -2159 4051 2422 2189 299 105 30 chr13 100739831 100740169 -19004729 - L1 LINE L1 -5117 1024 713 * 1966 146 138 21 chr13 100740169 100740552 -19004346 + MSTA LTR MaLR 1 428 0 2189 299 105 30 chr13 100740552 100741162 -19003736 - L1 LINE L1 -5428 713 4 2542 81 0 0 chr13 100741662 100741972 -19002926 + AluSg SINE Alu 1 310 0 486 49 0 0 chr13 100741977 100742038 -19002860 + (TA)n Simple_repeat Simple_repeat 2 62 0 192 365 54 0 chr13 100742697 100742771 -19002127 - L2 LINE L2 -4 3268 3191 381 287 74 0 chr13 100743641 100743763 -19001135 - Tigger8 DNA MER2_type -355 311 181 236 223 117 39 chr13 100744002 100744105 -19000793 + MIR SINE MIR 117 227 -35 540 210 24 16 chr13 100744431 100744555 -19000343 + MER94 DNA DNA 10 134 0 617 256 89 25 chr13 100745059 100745262 -18999636 + MIR SINE MIR 22 237 -25 183 42 0 0 chr13 100745961 100745985 -18998913 + (CAA)n Simple_repeat Simple_repeat 2 25 0 260 264 81 35 chr13 100746270 100746357 -18998541 + L2 LINE L2 3223 3313 0 469 358 136 27 chr13 100746371 100746740 -18998158 - L2 LINE L2 0 3272 2864 276 158 0 0 chr13 100746740 100746797 -18998101 + (TG)n Simple_repeat Simple_repeat 2 58 0 206 305 85 68 chr13 100746849 100747026 -18997872 - L2 LINE L2 -498 2816 2637 477 90 0 0 chr13 100747833 100747900 -18996998 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 2355 88 0 22 chr13 100747903 100748221 -18996677 - AluY SINE Alu 0 311 1 2169 139 0 0 chr13 100748231 100748540 -18996358 - AluSx SINE Alu 0 312 4 300 210 140 20 chr13 100748847 100748947 -18995951 + L1MC4 LINE L1 6592 6703 -1339 252 318 45 85 chr13 100749137 100749313 -18995585 + MIR3 SINE MIR 8 176 -32 1126 255 123 5 chr13 100750496 100750920 -18993978 - Charlie4a DNA MER1_type -6 502 29 1724 163 7 17 chr13 100752787 100753076 -18991822 - AluJo SINE Alu -19 293 8 249 269 204 0 chr13 100753316 100753409 -18991489 - MER94 DNA DNA -22 112 1 245 217 29 29 chr13 100753497 100753566 -18991332 + MIR SINE MIR 81 149 -113 213 352 134 21 chr13 100754167 100754309 -18990589 + MIR3 SINE MIR 2 159 -49 330 258 8 100 chr13 100754356 100754476 -18990422 - L2 LINE L2 -1 3312 3204 2432 113 3 42 chr13 100754530 100754909 -18989989 + THE1B LTR MaLR 1 364 0 222 302 58 0 chr13 100755038 100755124 -18989774 - L3b LINE CR1 -209 1374 1284 642 187 86 39 chr13 100755616 100755801 -18989097 - MLT1B LTR MaLR -187 187 10 2596 82 30 8 chr13 100755801 100756168 -18988730 - THE1C LTR MaLR 0 375 1 642 187 86 39 chr13 100756168 100756179 -18988719 - MLT1B LTR MaLR -364 10 1 210 71 0 0 chr13 100756422 100756450 -18988448 + (CA)n Simple_repeat Simple_repeat 2 29 0 837 216 31 16 chr13 100757784 100757978 -18986920 + MLT1B LTR MaLR 192 388 -2 29 0 0 0 chr13 100758082 100758111 -18986787 + AT_rich Low_complexity Low_complexity 1 29 0 319 233 153 64 chr13 100758382 100758584 -18986314 + L2 LINE L2 2834 3053 -219 1632 188 122 13 chr13 100758658 100759051 -18985847 + MER63B DNA MER1_type 1 436 0 235 261 123 0 chr13 100759086 100759151 -18985747 + L2 LINE L2 3134 3206 -66 290 275 0 33 chr13 100759552 100759643 -18985255 + L2 LINE L2 3184 3271 -1 609 257 133 51 chr13 100760748 100761034 -18983864 + MLT1I LTR MaLR 7 329 -80 402 209 148 17 chr13 100761034 100761149 -18983749 + MER94 DNA DNA 1 130 -4 609 257 133 51 chr13 100761149 100761216 -18983682 + MLT1I LTR MaLR 329 389 -20 285 98 0 0 chr13 100761509 100761550 -18983348 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 213 121 0 0 chr13 100761667 100761700 -18983198 + (TC)n Simple_repeat Simple_repeat 2 34 0 559 167 0 19 chr13 100761700 100761808 -18983090 - AluJb SINE Alu 0 312 207 495 0 0 0 chr13 100762510 100762565 -18982333 + (CA)n Simple_repeat Simple_repeat 1 55 0 318 280 121 53 chr13 100764092 100764299 -18980599 + MIR SINE MIR 39 259 -3 306 287 122 17 chr13 100764413 100764528 -18980370 - MER5A DNA MER1_type -4 185 59 388 195 126 0 chr13 100764536 100764623 -18980275 - MLT1C LTR MaLR 0 467 370 309 269 197 36 chr13 100765263 100765486 -18979412 + L1ME4a LINE L1 5794 6052 -69 393 297 36 9 chr13 100766834 100766945 -18977953 - MIR SINE MIR -148 114 1 262 314 98 52 chr13 100766978 100767131 -18977767 - L2 LINE L2 0 3313 3154 2351 85 3 0 chr13 100768681 100768974 -18975924 - AluSc SINE Alu -15 294 1 247 333 61 48 chr13 100769106 100769271 -18975627 + L3b LINE CR1 1328 1494 -89 449 258 168 7 chr13 100771422 100771577 -18973321 - MER5A DNA MER1_type 0 189 10 2248 140 56 35 chr13 100771854 100772373 -18972525 - MLT2A2 LTR ERVL 0 554 1 369 0 0 0 chr13 100772419 100772460 -18972438 + (CTTG)n Simple_repeat Simple_repeat 2 42 0 230 81 27 0 chr13 100772460 100772497 -18972401 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 603 0 0 0 chr13 100772581 100772648 -18972250 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 680 235 25 25 chr13 100773364 100773560 -18971338 - MLT1K LTR MaLR -15 573 378 511 256 11 0 chr13 100773560 100773736 -18971162 + CT-rich Low_complexity Low_complexity 1 178 0 284 253 120 40 chr13 100773744 100773894 -18971004 - MLT1K LTR MaLR -163 425 264 465 282 38 56 chr13 100774308 100774521 -18970377 - HAL1 LINE L1 -1800 707 499 375 171 0 0 chr13 100774560 100774636 -18970262 + (TG)n Simple_repeat Simple_repeat 2 77 0 21 57 0 0 chr13 100774884 100774919 -18969979 + AT_rich Low_complexity Low_complexity 1 35 0 499 246 90 8 chr13 100775487 100775621 -18969277 - MIR SINE MIR -1 261 117 877 246 11 0 chr13 100775665 100775852 -18969046 + MER5A DNA MER1_type 1 189 0 616 315 58 50 chr13 100776095 100776842 -18968056 + L1M4 LINE L1 3759 4511 -1635 387 284 78 14 chr13 100776996 100777278 -18967620 + L1M4 LINE L1 4729 5028 -1118 1380 264 50 31 chr13 100778205 100778958 -18965940 + L2 LINE L2 2545 3313 0 225 0 0 0 chr13 100779881 100779906 -18964992 + (TG)n Simple_repeat Simple_repeat 2 26 0 277 115 77 19 chr13 100780293 100780345 -18964553 - L2 LINE L2 -13 3300 3246 291 290 21 0 chr13 100781136 100781229 -18963669 + (CATATA)n Simple_repeat Simple_repeat 4 98 0 556 273 0 0 chr13 100782117 100782245 -18962653 - MER3 DNA MER1_type -80 129 2 866 213 58 0 chr13 100783684 100783872 -18961026 - MER3 DNA MER1_type -10 199 1 25 51 0 0 chr13 100784263 100784302 -18960596 + AT_rich Low_complexity Low_complexity 1 39 0 322 365 34 17 chr13 100784562 100784795 -18960103 + L2 LINE L2 2592 2828 -486 254 230 0 137 chr13 100785452 100785613 -18959285 + L2 LINE L2 3175 3313 0 27 62 0 0 chr13 100785645 100785693 -18959205 + AT_rich Low_complexity Low_complexity 1 48 0 409 333 10 0 chr13 100786925 100787027 -18957871 + L2 LINE L2 3163 3265 -7 1637 149 149 49 chr13 100787502 100787718 -18957180 - MSTA LTR MaLR 0 428 235 2481 100 0 0 chr13 100787718 100788027 -18956871 - AluSx SINE Alu -3 309 1 1637 149 149 49 chr13 100788027 100788199 -18956699 - MSTA LTR MaLR -193 235 1 21 0 0 0 chr13 100788381 100788402 -18956496 + AT_rich Low_complexity Low_complexity 1 21 0 287 313 35 42 chr13 100789102 100789246 -18955652 + MIR3 SINE MIR 2 144 -64 1673 140 32 68 chr13 100789280 100789634 -18955264 + AluSx SINE Alu 1 312 0 620 266 32 56 chr13 100789767 100790109 -18954789 + L1ME4a LINE L1 5531 5864 -257 328 217 11 97 chr13 100790181 100790356 -18954542 + L1ME4a LINE L1 5892 6051 -70 1082 241 0 5 chr13 100790549 100790773 -18954125 + MER58A DNA MER1_type 1 223 -1 2140 127 0 0 chr13 100791535 100791827 -18953071 + AluSx SINE Alu 5 296 -16 2249 99 17 0 chr13 100792350 100792668 -18952230 - AluSg SINE Alu 0 332 10 22 0 0 0 chr13 100793514 100793536 -18951362 + AT_rich Low_complexity Low_complexity 1 22 0 1962 133 3 52 chr13 100793587 100793766 -18951132 - AluSx SINE Alu -4 308 151 2116 107 0 0 chr13 100793766 100794037 -18950861 - AluSc SINE Alu -3 306 36 1962 133 3 52 chr13 100794037 100794181 -18950717 - AluSx SINE Alu -161 151 1 21 0 0 0 chr13 100797468 100797489 -18947409 + AT_rich Low_complexity Low_complexity 1 21 0 338 238 113 61 chr13 100797535 100797766 -18947132 + L1ME4a LINE L1 5830 6072 -49 233 177 0 65 chr13 100797868 100797930 -18946968 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 546 143 0 0 chr13 100798267 100798372 -18946526 + (TCCC)n Simple_repeat Simple_repeat 1 105 0 26 74 0 0 chr13 100800104 100800158 -18944740 + AT_rich Low_complexity Low_complexity 1 54 0 266 244 35 88 chr13 100800202 100800340 -18944558 - L1M4 LINE L1 -3580 2566 2449 2204 134 0 0 chr13 100800340 100800645 -18944253 + AluSx SINE Alu 1 305 -7 266 244 35 88 chr13 100800645 100800789 -18944109 - L1M4 LINE L1 -3697 2449 2299 1864 175 7 0 chr13 100801589 100801892 -18943006 + AluSx SINE Alu 1 305 -7 364 246 25 0 chr13 100802294 100802416 -18942482 + L1ME3A LINE L1 5832 5956 -214 21 36 0 0 chr13 100802568 100802596 -18942302 + AT_rich Low_complexity Low_complexity 1 28 0 333 263 0 0 chr13 100803815 100803914 -18940984 + (TA)n Simple_repeat Simple_repeat 2 100 0 420 20 0 0 chr13 100803928 100803977 -18940921 + (TG)n Simple_repeat Simple_repeat 2 50 0 25 51 0 0 chr13 100804632 100804671 -18940227 + AT_rich Low_complexity Low_complexity 1 39 0 4851 153 48 20 chr13 100804672 100804997 -18939901 - L1PA16 LINE L1 -11 6155 5841 595 54 11 11 chr13 100804997 100805090 -18939808 + (TA)n Simple_repeat Simple_repeat 2 94 0 4851 153 48 20 chr13 100805090 100805920 -18938978 - L1PA16 LINE L1 -325 5841 4961 2075 126 0 3 chr13 100805920 100806244 -18938654 + AluSx SINE Alu 1 323 0 4851 153 48 20 chr13 100806244 100806502 -18938396 - L1PA16 LINE L1 -1205 4961 4712 2928 163 38 64 chr13 100806629 100807315 -18937583 - L1MB8 LINE L1 -6 6172 5505 5413 265 131 23 chr13 100808877 100809933 -18934965 + L2 LINE L2 529 1469 -1844 1645 166 0 40 chr13 100809933 100810279 -18934619 + AluJb SINE Alu 1 334 0 5413 265 131 23 chr13 100810279 100811604 -18933294 + L2 LINE L2 1469 3302 -11 460 240 25 8 chr13 100812002 100812123 -18932775 - L2 LINE L2 -1271 2043 1921 1702 187 85 19 chr13 100812189 100812611 -18932287 + MLT1C LTR MaLR 1 450 -17 241 87 43 22 chr13 100813018 100813064 -18931834 - MLT1C LTR MaLR -343 124 78 1022 193 10 0 chr13 100813171 100813363 -18931535 - MER2 DNA MER2_type -151 194 1 40880 35 21 1 chr13 100813851 100819879 -18925019 - L1PA4 LINE L1 -4 6151 1 190 244 195 24 chr13 100820017 100820099 -18924799 + MIR SINE MIR 46 141 -67 1112 202 5 10 chr13 100820482 100820807 -18924091 + MLT1A1 LTR MaLR 10 365 0 2206 187 26 20 chr13 100821377 100821832 -18923066 - MER74C LTR ERVL 0 460 3 1432 153 227 20 chr13 100821842 100822142 -18922756 + MSTB LTR MaLR 1 386 -40 2213 135 8 27 chr13 100822142 100822513 -18922385 - THE1B LTR MaLR 0 364 1 1432 153 227 20 chr13 100822513 100822565 -18922333 + MSTB LTR MaLR 386 426 0 731 266 151 36 chr13 100823813 100824028 -18920870 - HAL1 LINE L1 -2 2505 2316 2077 179 5 23 chr13 100824028 100824425 -18920473 + MLT1B LTR MaLR 1 390 0 731 266 151 36 chr13 100824425 100824723 -18920175 - HAL1 LINE L1 -191 2316 1916 2184 78 3 50 chr13 100824723 100825045 -18919853 - AluY SINE Alu -4 307 1 731 266 151 36 chr13 100825045 100825108 -18919790 - HAL1 LINE L1 -591 1916 1862 1418 279 148 35 chr13 100825160 100826399 -18918499 - HAL1 LINE L1 -966 1541 164 521 330 89 0 chr13 100827981 100828205 -18916693 + MIR SINE MIR 15 258 -4 183 372 101 16 chr13 100828344 100828473 -18916425 + L2 LINE L2 3129 3268 -4 24 53 0 0 chr13 100828714 100828752 -18916146 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr13 100829110 100829145 -18915753 + AT_rich Low_complexity Low_complexity 1 35 0 273 270 32 56 chr13 100829946 100830072 -18914826 + L2 LINE L2 3153 3275 -38 1529 225 92 2 chr13 100830845 100831290 -18913608 - MLT1D LTR MaLR 0 505 21 2223 125 0 0 chr13 100831401 100831712 -18913186 - AluY SINE Alu 0 311 1 190 228 203 0 chr13 100832037 100832116 -18912782 - MIR SINE MIR -93 169 75 2134 127 6 29 chr13 100833284 100833409 -18911489 - MER1B DNA MER1_type -2373 339 213 1550 115 22 4 chr13 100833409 100833635 -18911263 + MER30 DNA MER1_type 1 230 0 2134 127 6 29 chr13 100833635 100833856 -18911042 - MER1B DNA MER1_type -2499 213 1 2364 59 7 3 chr13 100833963 100834271 -18910627 + AluY SINE Alu 1 309 0 1508 242 154 18 chr13 100834405 100834917 -18909981 + MLT1E LTR MaLR 4 585 -8 421 339 16 0 chr13 100835586 100835710 -18909188 + L2 LINE L2 3143 3268 -4 1679 173 35 14 chr13 100838991 100839280 -18905618 - AluJb SINE Alu -15 297 3 637 293 141 41 chr13 100839386 100839832 -18905066 + L1MC4 LINE L1 4114 4623 -1523 2092 236 56 15 chr13 100839832 100840353 -18904545 - MLT1F LTR MaLR 0 542 1 637 293 141 41 chr13 100840353 100840439 -18904459 + L1MC4 LINE L1 4623 4699 -1447 837 266 52 9 chr13 100840439 100840672 -18904226 - MIR SINE MIR -3 259 17 1544 87 91 0 chr13 100840714 100840933 -18903965 - AluSc SINE Alu -1 308 70 369 294 89 19 chr13 100841637 100841851 -18903047 + L1MC4 LINE L1 5578 5806 -2002 231 208 14 14 chr13 100842735 100842807 -18902091 + L1MC4 LINE L1 6971 7042 -1000 1288 129 0 0 chr13 100842817 100843011 -18901887 + Tigger1 DNA MER2_type 1504 1697 -721 537 30 0 0 chr13 100843029 100843096 -18901802 + (CA)n Simple_repeat Simple_repeat 2 68 0 14382 128 27 33 chr13 100843097 100845237 -18899661 - Tigger1 DNA MER2_type -1 2417 291 1365 161 165 0 chr13 100845237 100845492 -18899406 - AluJo SINE Alu -5 297 1 14382 128 27 33 chr13 100845492 100845782 -18899116 - Tigger1 DNA MER2_type -2127 291 1 356 227 50 8 chr13 100845825 100845944 -18898954 + L1MC4 LINE L1 7120 7243 -799 913 266 71 60 chr13 100846078 100846540 -18898358 + L1MC4 LINE L1 7447 7917 -125 441 0 0 0 chr13 100846540 100846589 -18898309 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 913 266 71 60 chr13 100846589 100846675 -18898223 + L1MC4 LINE L1 7917 8001 -41 358 204 259 9 chr13 100847162 100847270 -18897628 + MER5A DNA MER1_type 11 145 -44 2104 130 3 3 chr13 100848334 100848634 -18896264 + AluSx SINE Alu 1 300 -12 719 169 175 6 chr13 100849564 100849724 -18895174 + MER5A DNA MER1_type 1 187 -2 24 0 0 0 chr13 100849944 100849968 -18894930 + AT_rich Low_complexity Low_complexity 1 24 0 266 286 36 50 chr13 100850091 100850231 -18894667 - MLT1J LTR MaLR -47 464 327 2348 211 103 46 chr13 100850311 100850798 -18894100 + L1MD2 LINE L1 5634 6172 -187 215 31 31 0 chr13 100850798 100850830 -18894068 + (CA)n Simple_repeat Simple_repeat 1 33 0 2348 211 103 46 chr13 100850830 100851019 -18893879 + L1MD2 LINE L1 6172 6349 -10 263 239 68 34 chr13 100851033 100851121 -18893777 - MLT1J LTR MaLR -312 199 109 21 0 0 0 chr13 100851729 100851750 -18893148 + AT_rich Low_complexity Low_complexity 1 21 0 3639 161 50 17 chr13 100851757 100852463 -18892435 + L1MB4 LINE L1 5451 6179 -1 303 293 53 20 chr13 100853519 100853669 -18891229 + MIR SINE MIR 62 216 -46 22 56 0 0 chr13 100853816 100853852 -18891046 + AT_rich Low_complexity Low_complexity 1 36 0 1690 126 106 0 chr13 100853864 100854146 -18890752 + AluSx SINE Alu 1 309 0 736 182 119 13 chr13 100854231 100854390 -18890508 + MER5B DNA MER1_type 3 178 0 2302 130 22 3 chr13 100854409 100854764 -18890134 + THE1B LTR MaLR 1 362 -2 22 35 0 0 chr13 100856173 100856202 -18888696 + AT_rich Low_complexity Low_complexity 1 29 0 289 164 98 0 chr13 100857658 100857719 -18887179 + MIR3 SINE MIR 94 160 -48 525 254 0 129 chr13 100857719 100857920 -18886978 - MER5B DNA MER1_type 0 178 4 24 85 0 0 chr13 100858041 100858100 -18886798 + AT_rich Low_complexity Low_complexity 1 59 0 1994 112 51 3 chr13 100858300 100858595 -18886303 + AluSx SINE Alu 1 309 -3 391 260 134 54 chr13 100858615 100858838 -18886060 - L1MB8 LINE L1 -194 5976 5736 330 239 71 25 chr13 100858840 100858971 -18885927 - L1MB8 LINE L1 -650 5516 5381 5586 152 19 30 chr13 100858978 100860390 -18884508 - L1MA9 LINE L1 0 6312 4922 312 113 19 0 chr13 100860395 100860448 -18884450 - L1MA9 LINE L1 -1193 4953 4900 278 200 163 30 chr13 100860445 100860580 -18884318 - L1M3c LINE L1 -4751 1390 1238 * 1023 253 142 28 chr13 100860588 100860989 -18883909 - MLT1D LTR MaLR -56 440 3 252 293 20 20 chr13 100862438 100862537 -18882361 + MIR3 SINE MIR 109 207 -1 755 335 35 33 chr13 100862636 100863154 -18881744 + L2 LINE L2 2795 3311 -2 345 245 204 7 chr13 100864306 100864453 -18880445 + MIR SINE MIR 84 259 -3 821 130 0 8 chr13 100864504 100864627 -18880271 + FLAM_C SINE Alu 1 122 -11 219 132 53 66 chr13 100864629 100864705 -18880193 + T-rich Low_complexity Low_complexity 6 80 0 * 237 235 10 10 chr13 100864655 100864753 -18880145 + (TTTA)n Simple_repeat Simple_repeat 1 98 0 1607 166 48 4 chr13 100864753 100865050 -18879848 + AluJo SINE Alu 1 309 0 277 357 92 0 chr13 100866426 100866524 -18878374 + MER91A DNA MER1_type 90 196 0 2134 149 14 14 chr13 100866886 100867248 -18877650 + MLT1A1 LTR MaLR 1 362 -3 339 286 29 93 chr13 100867332 100867472 -18877426 + MER5A DNA MER1_type 54 184 -5 294 380 60 18 chr13 100867663 100867829 -18877069 - L3 LINE CR1 -5 1572 1400 2238 113 0 0 chr13 100867935 100868236 -18876662 - AluSq SINE Alu -12 301 1 510 79 0 0 chr13 100869033 100869109 -18875789 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 413 271 0 0 chr13 100869182 100869278 -18875620 + MIR SINE MIR 99 194 -68 2580 205 12 6 chr13 100869459 100869951 -18874947 - LTR53 LTR ERVL -24 495 1 1989 124 31 7 chr13 100870840 100871130 -18873768 + AluSx SINE Alu 1 297 -15 235 78 39 20 chr13 100871909 100871960 -18872938 + T-rich Low_complexity Low_complexity 3 54 0 2385 86 3 0 chr13 100872568 100872871 -18872027 + AluSp SINE Alu 1 304 -9 355 259 238 11 chr13 100873420 100873605 -18871293 - MIR SINE MIR 0 262 36 306 48 0 0 chr13 100874145 100874187 -18870711 - L1MA9 LINE L1 -5 6307 6266 2199 104 0 3 chr13 100874255 100874544 -18870354 + AluSc SINE Alu 1 288 -21 312 93 0 0 chr13 100874553 100874596 -18870302 - L1MA9 LINE L1 -214 6098 6056 909 209 0 0 chr13 100874596 100874759 -18870139 - AluJb SINE Alu -9 303 141 232 163 0 41 chr13 100875412 100875461 -18869437 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1757 132 79 22 chr13 100876295 100876650 -18868248 + THE1C LTR MaLR 1 375 0 464 265 40 36 chr13 100876828 100877077 -18867821 + L1MA8 LINE L1 6039 6288 -3 497 356 45 6 chr13 100877362 100877539 -18867359 - MIR3 SINE MIR -8 200 17 1258 190 0 14 chr13 100877956 100878278 -18866620 + MLT1A1 LTR MaLR 1 365 0 257 349 61 45 chr13 100878320 100878650 -18866248 + L2 LINE L2 2466 2800 -514 895 222 86 25 chr13 100878976 100879199 -18865699 - MER82 DNA MER2_type -1 652 415 1956 112 28 34 chr13 100879199 100879520 -18865378 - THE1B LTR MaLR 0 364 46 541 339 25 70 chr13 100879964 100880576 -18864322 - L2 LINE L2 0 3272 2707 2160 138 33 28 chr13 100880576 100880938 -18863960 + THE1B LTR MaLR 1 364 0 541 339 25 70 chr13 100880938 100881036 -18863862 - L2 LINE L2 -565 2707 2606 26 0 0 0 chr13 100882583 100882609 -18862289 + AT_rich Low_complexity Low_complexity 1 26 0 200 184 20 0 chr13 100883511 100883560 -18861338 + GA-rich Low_complexity Low_complexity 3 52 0 329 148 235 0 chr13 100883600 100883681 -18861217 + MIR SINE MIR 66 165 -97 1850 154 0 0 chr13 100883702 100883981 -18860917 + AluSx SINE Alu 1 279 -33 243 0 0 0 chr13 100883981 100884008 -18860890 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 306 191 383 0 chr13 100884257 100884372 -18860526 - MER63 DNA MER1_type -277 785 1 2213 106 6 3 chr13 100884591 100884903 -18859995 + AluSq SINE Alu 1 313 0 485 211 106 28 chr13 100885457 100885599 -18859299 - MIR SINE MIR -15 247 95 557 246 42 36 chr13 100885684 100885851 -18859047 + MIR SINE MIR 64 231 -31 2097 127 20 3 chr13 100885949 100886249 -18858649 - AluSq SINE Alu -8 305 1 411 275 140 17 chr13 100886325 100886503 -18858395 + MLT1E3 LTR MaLR 1 200 -393 1096 213 107 0 chr13 100886522 100886802 -18858096 + MLT1E3 LTR MaLR 315 624 0 250 276 79 13 chr13 100886990 100887066 -18857832 - MIR3 SINE MIR -21 187 107 21 57 0 0 chr13 100887194 100887229 -18857669 + AT_rich Low_complexity Low_complexity 1 35 0 930 144 0 0 chr13 100887826 100888006 -18856892 + (CA)n Simple_repeat Simple_repeat 1 180 0 2039 130 3 0 chr13 100889251 100889543 -18855355 - AluSx SINE Alu -18 294 2 587 212 0 0 chr13 100889642 100889755 -18855143 - FLAM_A SINE Alu -7 135 23 230 245 41 0 chr13 100889760 100889809 -18855089 - AluSp SINE Alu -117 186 136 586 249 95 6 chr13 100889887 100890056 -18854842 + MIR SINE MIR 79 262 0 2773 221 65 6 chr13 100890128 100890915 -18853983 - L1ME2 LINE L1 -44 6120 5288 2392 119 5 24 chr13 100892466 100892837 -18852061 + THE1B LTR MaLR 1 364 0 229 354 61 10 chr13 100893105 100893204 -18851694 + L2 LINE L2 3209 3312 -1 544 308 125 5 chr13 100894975 100895199 -18849699 + MIR SINE MIR 2 252 -10 200 316 51 38 chr13 100895309 100895388 -18849510 - L2 LINE L2 -44 3228 3149 2136 110 3 0 chr13 100895626 100895908 -18848990 - AluSc SINE Alu -26 283 1 2203 89 3 3 chr13 100896312 100896623 -18848275 + AluSx SINE Alu 1 311 0 199 250 62 0 chr13 100897095 100897143 -18847755 + L2 LINE L2 3220 3270 -2 273 350 106 6 chr13 100897309 100897469 -18847429 - MIR SINE MIR -14 248 73 309 348 88 41 chr13 100897560 100897925 -18846973 + L1ME LINE L1 4889 5270 -876 293 278 90 21 chr13 100897945 100898208 -18846690 + L1ME LINE L1 5265 5536 -585 677 347 108 26 chr13 100898949 100899664 -18845234 - L2 LINE L2 -157 3115 2318 2447 87 0 0 chr13 100899664 100899973 -18844925 - AluSc SINE Alu 0 309 1 677 347 108 26 chr13 100899973 100900063 -18844835 - L2 LINE L2 -954 2318 2237 193 106 21 21 chr13 100900499 100900546 -18844352 + (TA)n Simple_repeat Simple_repeat 2 48 0 287 272 33 0 chr13 100901985 100902077 -18842821 - MIR3 SINE MIR -6 202 108 2201 121 3 0 chr13 100902146 100902452 -18842446 - AluSq SINE Alu -6 307 1 2417 67 7 0 chr13 100904423 100904720 -18840178 - AluY SINE Alu -12 299 1 377 222 83 28 chr13 100904885 100904993 -18839905 - L2 LINE L2 -11 3302 3189 204 345 36 36 chr13 100905156 100905240 -18839658 + L2 LINE L2 3142 3225 -47 360 273 0 0 chr13 100905252 100905395 -18839503 + (TA)n Simple_repeat Simple_repeat 2 144 0 252 0 0 0 chr13 100905403 100905431 -18839467 + (CA)n Simple_repeat Simple_repeat 1 28 0 2688 210 51 37 chr13 100905435 100906078 -18838820 + MER82 DNA MER2_type 2 653 0 275 148 0 33 chr13 100907144 100907205 -18837693 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1840 165 59 25 chr13 100907230 100907673 -18837225 - MLT1C LTR MaLR -7 460 3 248 360 44 53 chr13 100909089 100909203 -18835695 + L2 LINE L2 2709 2821 -493 448 352 77 57 chr13 100909238 100909590 -18835308 + L2 LINE L2 2914 3272 0 1140 258 176 18 chr13 100910929 100911543 -18833355 - L2 LINE L2 0 3313 2603 1675 219 50 0 chr13 100912142 100912484 -18832414 - MLT1A1 LTR MaLR -2 363 5 424 305 112 0 chr13 100912758 100912955 -18831943 + MIR SINE MIR 44 262 0 225 94 0 0 chr13 100913284 100913316 -18831582 + (TG)n Simple_repeat Simple_repeat 1 32 0 248 318 30 38 chr13 100913568 100913700 -18831198 - L2 LINE L2 -1 3271 3141 552 303 26 0 chr13 100914617 100914769 -18830129 + MER5B DNA MER1_type 20 175 -3 406 299 162 15 chr13 100914843 100915047 -18829851 + MIR SINE MIR 23 256 -6 1769 206 83 2 chr13 100915230 100915676 -18829222 - L1MD3 LINE L1 -13 7982 7501 2109 128 36 44 chr13 100915743 100915786 -18829112 - MLT1B LTR MaLR 0 390 348 1663 109 12 16 chr13 100915786 100916034 -18828864 + AluSc SINE Alu 51 297 -12 2109 128 36 44 chr13 100916034 100916379 -18828519 - MLT1B LTR MaLR -42 348 5 572 295 60 34 chr13 100916701 100916969 -18827929 + L3b LINE CR1 1146 1420 -163 1402 199 30 10 chr13 100918598 100918928 -18825970 + AluJo SINE Alu 1 336 0 1079 197 41 54 chr13 100920911 100921005 -18823893 + MLT1B LTR MaLR 98 192 -198 2040 119 31 88 chr13 100921005 100921323 -18823575 + THE1B LTR MaLR 1 295 -69 2087 148 0 0 chr13 100921323 100921626 -18823272 + AluSq SINE Alu 1 303 -10 2040 119 31 88 chr13 100921626 100921693 -18823205 + THE1B LTR MaLR 295 364 0 1079 197 41 54 chr13 100921693 100921893 -18823005 + MLT1B LTR MaLR 192 388 -2 22 0 0 0 chr13 100922519 100922541 -18822357 + AT_rich Low_complexity Low_complexity 1 22 0 229 345 147 8 chr13 100923431 100923669 -18821229 + L2 LINE L2 1699 1969 -1345 1959 186 0 56 chr13 100924139 100924552 -18820346 + MLT1B LTR MaLR 1 390 0 411 296 68 53 chr13 100926050 100926182 -18818716 - MIR3 SINE MIR -63 145 12 2015 156 3 7 chr13 100926454 100926762 -18818136 + AluSx SINE Alu 1 307 -5 230 343 0 15 chr13 100926829 100926896 -18818002 + MIR SINE MIR 16 81 -127 830 270 34 9 chr13 100927157 100927390 -18817508 + MIR SINE MIR 1 239 -23 1974 151 13 0 chr13 100927835 100928134 -18816764 + AluSx SINE Alu 1 303 -9 258 32 0 0 chr13 100928134 100928165 -18816733 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 * 312 27 0 0 chr13 100928164 100928201 -18816697 + (GGAAA)n Simple_repeat Simple_repeat 2 38 0 1530 199 28 22 chr13 100928577 100928939 -18815959 + MLT1A1 LTR MaLR 1 364 -1 839 284 167 30 chr13 100929090 100929696 -18815202 + HAL1 LINE L1 744 1266 -1241 1791 177 28 0 chr13 100929696 100929984 -18814914 - AluJb SINE Alu -16 296 1 839 284 167 30 chr13 100929984 100930394 -18814504 + HAL1 LINE L1 1266 1899 -608 32 86 0 0 chr13 100930830 100930911 -18813987 + AT_rich Low_complexity Low_complexity 1 81 0 2547 57 0 0 chr13 100930919 100931220 -18813678 + AluY SINE Alu 1 301 -10 347 306 121 29 chr13 100931267 100931440 -18813458 + L2 LINE L2 3124 3312 -1 2070 141 0 7 chr13 100933255 100933561 -18811337 + AluSx SINE Alu 1 304 -8 2433 64 0 3 chr13 100933562 100933858 -18811040 + AluY SINE Alu 2 296 -15 232 267 29 48 chr13 100934408 100934513 -18810385 - MIR3 SINE MIR -12 196 94 4248 85 62 7 chr13 100935054 100935664 -18809234 + LTR9B LTR ERV1 1 644 0 1788 163 3 0 chr13 100936642 100936931 -18807967 - AluJo SINE Alu -21 291 2 180 261 0 0 chr13 100937285 100937350 -18807548 + (TA)n Simple_repeat Simple_repeat 2 66 0 225 283 72 58 chr13 100940573 100940711 -18804187 + L2 LINE L2 3160 3299 -14 239 323 92 76 chr13 100941168 100941419 -18803479 - L3 LINE CR1 -989 588 334 545 271 45 26 chr13 100942124 100942244 -18802654 + MIR3 SINE MIR 36 162 -46 2069 101 7 14 chr13 100942244 100942566 -18802332 + AluSx SINE Alu 1 320 0 545 271 45 26 chr13 100942566 100942599 -18802299 + MIR3 SINE MIR 162 193 -15 2110 119 0 3 chr13 100943939 100944224 -18800674 + AluSg SINE Alu 14 297 -13 782 263 30 63 chr13 100944728 100944900 -18799998 + MIR SINE MIR 2 163 -99 1695 201 5 27 chr13 100944900 100945273 -18799625 + MLT1A1 LTR MaLR 1 365 0 782 263 30 63 chr13 100945273 100945370 -18799528 + MIR SINE MIR 163 262 0 198 143 0 0 chr13 100945818 100945853 -18799045 + (GGAGAA)n Simple_repeat Simple_repeat 3 37 0 185 205 0 26 chr13 100946778 100946817 -18798081 - L2 LINE L2 -10 3262 3225 790 229 61 26 chr13 100947438 100947669 -18797229 - MIR SINE MIR -10 252 14 474 257 0 9 chr13 100948478 100948587 -18796311 + L2 LINE L2 2588 2695 -619 1242 177 12 0 chr13 100948597 100948840 -18796058 + L1MB7 LINE L1 5629 5874 -304 362 154 0 13 chr13 100948943 100949021 -18795877 + L1MB7 LINE L1 6108 6184 0 1001 300 65 14 chr13 100949023 100949596 -18795302 + L2 LINE L2 2702 3310 -3 2176 112 10 0 chr13 100949605 100949901 -18794997 + AluSx SINE Alu 1 299 -13 208 307 164 14 chr13 100950337 100950477 -18794421 - L2 LINE L2 -164 3149 2989 1936 205 123 26 chr13 100950500 100951075 -18793823 + LTR48B LTR ERV1 1 631 -13 541 371 29 40 chr13 100951086 100951542 -18793356 - L2 LINE L2 -397 2917 2467 365 259 254 67 chr13 100952122 100952555 -18792343 - MLT1H1 LTR MaLR 0 555 42 267 31 0 0 chr13 100954166 100954198 -18790700 + (TG)n Simple_repeat Simple_repeat 2 33 0 193 305 0 17 chr13 100954229 100954288 -18790610 - MER5A DNA MER1_type -41 148 91 3367 30 7 0 chr13 100954303 100954708 -18790190 - L1PA4 LINE L1 0 6155 5748 426 37 0 0 chr13 100954708 100954762 -18790136 + L1P LINE L1 5331 5384 -771 195 226 32 48 chr13 100954775 100954837 -18790061 + MER5A DNA MER1_type 129 189 0 380 287 84 18 chr13 100955549 100955716 -18789182 - MIR SINE MIR -18 244 67 516 32 0 0 chr13 100956331 100956393 -18788505 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1964 144 0 7 chr13 100956393 100956678 -18788220 - AluSx SINE Alu -29 283 1 183 235 296 26 chr13 100957497 100957612 -18787286 + MIR SINE MIR 114 259 -3 4551 186 15 24 chr13 100957627 100958671 -18786227 + L1 LINE L1 3984 5018 -1128 5409 151 27 3 chr13 100958826 100960066 -18784832 + L1PA16 LINE L1 4898 6160 -6 28 0 0 0 chr13 100960094 100960122 -18784776 + AT_rich Low_complexity Low_complexity 1 28 0 1300 287 120 60 chr13 100962604 100963850 -18781048 + HAL1 LINE L1 1 1320 -1187 311 338 106 10 chr13 100963951 100964149 -18780749 + HAL1 LINE L1 1593 1809 -698 387 242 79 22 chr13 100964161 100964339 -18780559 + HAL1 LINE L1 2042 2229 -278 433 356 0 11 chr13 100964732 100964906 -18779992 - MIR SINE MIR -87 175 4 455 364 156 2 chr13 100965232 100965655 -18779243 - L2 LINE L2 -338 2976 2489 247 276 82 0 chr13 100965669 100965767 -18779131 - MLT1I LTR MaLR -8 401 296 239 340 52 7 chr13 100965916 100966069 -18778829 - MLT1I LTR MaLR -249 160 1 2126 117 0 0 chr13 100966088 100966398 -18778500 - AluSq SINE Alu 0 310 1 198 103 0 0 chr13 100966443 100966472 -18778426 + (TG)n Simple_repeat Simple_repeat 2 30 0 348 139 63 51 chr13 100967156 100967235 -18777663 - MLT1A2 LTR MaLR -294 80 1 975 285 117 26 chr13 100967248 100967870 -18777028 + L2 LINE L2 2412 3086 -227 542 149 43 0 chr13 100967873 100967967 -18776931 + Tigger3(Golem) DNA MER2_type 2931 3028 -1 433 289 87 63 chr13 100968262 100968688 -18776210 + HAL1b LINE L1 171 606 -742 250 278 83 8 chr13 100968869 100969002 -18775896 + L1ME LINE L1 4258 4400 -1746 247 193 24 36 chr13 100969178 100969261 -18775637 + L1ME LINE L1 4579 4660 -1486 609 122 0 1 chr13 100969647 100969747 -18775151 + L1 LINE L1 4067 4165 -1981 646 324 83 38 chr13 100969836 100970696 -18774202 + L1ME LINE L1 4860 5771 -399 403 256 24 40 chr13 100970714 100970839 -18774059 - MER94 DNA DNA 0 134 12 26 74 0 0 chr13 100971087 100971141 -18773757 + AT_rich Low_complexity Low_complexity 1 54 0 632 259 18 0 chr13 100971217 100971383 -18773515 + L1PB3 LINE L1 1305 1473 -5390 5485 163 37 1 chr13 100971391 100971694 -18773204 + L1PB3 LINE L1 4793 5084 -1786 522 0 0 0 chr13 100971694 100971752 -18773146 + (TAAAA)n Simple_repeat Simple_repeat 3 60 0 5485 163 37 1 chr13 100971752 100973210 -18771688 + L1PB3 LINE L1 5084 6620 -250 574 151 0 0 chr13 100973311 100973397 -18771501 - AluY SINE Alu -224 86 1 1926 117 0 7 chr13 100973691 100973964 -18770934 - AluSx SINE Alu -9 303 33 1690 81 4 0 chr13 100973964 100974210 -18770688 - L1PA4 LINE L1 -161 5994 5748 425 83 0 0 chr13 100974204 100974264 -18770634 + L1P LINE L1 5325 5384 -771 * 1762 156 21 28 chr13 100978154 100978442 -18766456 - AluJo SINE Alu -26 286 1 185 400 80 10 chr13 100981645 100981745 -18763153 - L2 LINE L2 -50 3222 3116 212 197 40 92 chr13 100981793 100981869 -18763029 - L2 LINE L2 0 3272 3201 891 290 52 59 chr13 100982202 100982510 -18762388 + L1M4 LINE L1 3607 3916 -2230 1785 171 0 4 chr13 100982510 100982791 -18762107 - AluJo SINE Alu -32 280 1 891 290 52 59 chr13 100982791 100983193 -18761705 + L1M4 LINE L1 3916 4312 -1834 223 178 0 0 chr13 100983194 100983239 -18761659 + (TATG)n Simple_repeat Simple_repeat 3 47 0 329 223 155 0 chr13 100983402 100983505 -18761393 + L1M4 LINE L1 4471 4589 -1557 2145 118 51 28 chr13 100984275 100984631 -18760267 - THE1B LTR MaLR 0 364 1 2098 137 0 0 chr13 100985674 100985973 -18758925 - AluSx SINE Alu -13 299 1 920 90 0 35 chr13 100986477 100986621 -18758277 - AluSq/x SINE Alu -173 139 1 186 329 107 21 chr13 100986749 100986889 -18758009 - MIR SINE MIR -6 256 105 209 339 96 0 chr13 100988922 100989037 -18755861 + MIR SINE MIR 76 201 -61 195 260 26 52 chr13 100989603 100989680 -18755218 - MIR SINE MIR -70 192 118 376 224 259 7 chr13 100990303 100990446 -18754452 + MER5A DNA MER1_type 1 179 -10 647 220 83 0 chr13 100990644 100990776 -18754122 + FRAM SINE Alu 1 143 -33 6993 95 14 7 chr13 100990876 100991938 -18752960 + L1P LINE L1 3890 4959 -1187 457 343 68 0 chr13 100992184 100992330 -18752568 - MIR SINE MIR -83 179 24 486 91 0 0 chr13 100993325 100993402 -18751496 + Tigger3(Golem) DNA MER2_type 195 271 -2758 1755 99 8 0 chr13 100993870 100994132 -18750766 - L1PA14 LINE L1 -259 5902 5639 1582 134 8 4 chr13 100994132 100994390 -18750508 + L1PA14 LINE L1 5900 6161 0 1705 171 11 14 chr13 100994604 100994890 -18750008 - AluJb SINE Alu -27 285 1 262 250 14 14 chr13 100994890 100994962 -18749936 + MLT1H LTR MaLR 130 201 -348 36 0 0 0 chr13 100995379 100995415 -18749483 + AT_rich Low_complexity Low_complexity 1 36 0 1751 155 38 14 chr13 100995632 100995923 -18748975 + AluSx SINE Alu 1 298 -14 623 326 42 11 chr13 100996037 100996507 -18748391 + L1ME3A LINE L1 5451 5940 -230 305 315 44 54 chr13 100996579 100996782 -18748116 + L1ME3A LINE L1 5970 6170 0 27 0 0 0 chr13 100996828 100996855 -18748043 + AT_rich Low_complexity Low_complexity 1 27 0 1692 147 8 60 chr13 100996941 100996980 -18747918 - L1MA9 LINE L1 -153 6159 6120 2391 59 7 3 chr13 100996980 100997270 -18747628 + AluY SINE Alu 6 296 -15 1692 147 8 60 chr13 100997270 100997597 -18747301 - L1MA9 LINE L1 -192 6120 5812 730 153 20 20 chr13 100997633 100997783 -18747115 + L1MA9 LINE L1 6163 6312 0 185 350 150 0 chr13 100998492 100998592 -18746306 - L2 LINE L2 -19 3294 3180 535 322 75 17 chr13 100998621 100998860 -18746038 - MIR SINE MIR -1 261 9 408 40 0 0 chr13 100999442 100999492 -18745406 + (CA)n Simple_repeat Simple_repeat 2 51 0 181 321 25 69 chr13 101000608 101000767 -18744131 + MIR SINE MIR 61 212 -50 711 305 46 78 chr13 101001937 101002531 -18742367 - L2 LINE L2 -20 3252 2659 1338 226 24 0 chr13 101002758 101003095 -18741803 - L1M4 LINE L1 -1053 5093 4749 4763 135 30 25 chr13 101003095 101003230 -18741668 - L1MA9 LINE L1 0 6312 6179 311 0 26 0 chr13 101003230 101003269 -18741629 + (TTCC)n Simple_repeat Simple_repeat 4 43 0 4763 135 30 25 chr13 101003269 101004019 -18740879 - L1MA9 LINE L1 -133 6179 5422 1666 231 24 8 chr13 101004019 101004526 -18740372 - L1M4 LINE L1 -1476 4670 4156 228 262 48 12 chr13 101004793 101004877 -18740021 - MLT1H LTR MaLR -341 208 122 458 330 35 75 chr13 101005169 101005514 -18739384 + L2 LINE L2 2941 3271 -1 247 259 17 0 chr13 101005521 101005579 -18739319 + GA-rich Low_complexity Low_complexity 4 62 0 317 122 0 0 chr13 101008132 101008181 -18736717 - MLT2D LTR ERVL 0 515 467 293 145 16 0 chr13 101008208 101008270 -18736628 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 658 266 92 34 chr13 101008323 101008616 -18736282 - MLT2D LTR ERVL -104 310 1 235 356 20 0 chr13 101008620 101008721 -18736177 - L3 LINE CR1 -310 1267 1165 264 301 133 29 chr13 101009382 101009555 -18735343 + L2 LINE L2 2895 3085 -187 2266 178 36 0 chr13 101009732 101010143 -18734755 + MSTB LTR MaLR 1 426 0 350 292 58 32 chr13 101010881 101011035 -18733863 - L2 LINE L2 0 3313 3156 276 328 97 84 chr13 101012711 101013104 -18731794 - L2 LINE L2 -8 3264 2867 216 158 0 0 chr13 101013443 101013481 -18731417 + (CGTG)n Simple_repeat Simple_repeat 1 38 0 846 295 101 31 chr13 101013674 101014118 -18730780 + L2 LINE L2 2839 3313 0 834 220 6 0 chr13 101014221 101014389 -18730509 + FRAM SINE Alu 1 169 -7 1066 188 49 14 chr13 101014389 101014677 -18730221 - MER33 DNA MER1_type -25 299 2 417 333 48 21 chr13 101015101 101015287 -18729611 + L2 LINE L2 2672 2862 -452 357 284 78 9 chr13 101015578 101015694 -18729204 + L2 LINE L2 3190 3313 0 234 62 0 0 chr13 101015897 101015929 -18728969 + (TG)n Simple_repeat Simple_repeat 2 33 0 435 206 31 0 chr13 101016378 101016475 -18728423 + L1PB4 LINE L1 6051 6150 -6 7040 176 46 38 chr13 101016486 101018107 -18726791 + L1P LINE L1 11 1645 -4501 318 302 58 29 chr13 101018250 101018389 -18726509 + L1ME LINE L1 5579 5721 -449 2216 86 29 0 chr13 101018475 101018754 -18726144 - AluSg SINE Alu -23 287 1 391 239 124 0 chr13 101019544 101019657 -18725241 + MLT1L LTR MaLR 354 480 -135 322 354 51 11 chr13 101019895 101020073 -18724825 - MIR3 SINE MIR -5 203 19 21 0 0 0 chr13 101020294 101020315 -18724583 + AT_rich Low_complexity Low_complexity 1 21 0 345 264 0 0 chr13 101022569 101022656 -18722242 + MIR SINE MIR 176 262 0 23 0 0 0 chr13 101022741 101022764 -18722134 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chr13 101022918 101022951 -18721947 + (TG)n Simple_repeat Simple_repeat 2 34 0 283 225 117 92 chr13 101023756 101023876 -18721022 + MIR3 SINE MIR 1 123 -85 377 281 94 0 chr13 101024748 101024844 -18720054 + MIR SINE MIR 17 121 -87 246 114 0 0 chr13 101024984 101025028 -18719870 - L1PA15 LINE L1 -1 6164 6121 24 32 0 0 chr13 101126412 101126443 -18618455 + AT_rich Low_complexity Low_complexity 1 31 0 946 271 68 38 chr13 101126510 101127083 -18617815 - HAL1b LINE L1 -89 1259 625 5867 164 34 2 chr13 101127142 101128848 -18616050 - L1PB3 LINE L1 0 6154 4369 522 0 0 0 chr13 101128848 101128906 -18615992 + (TTTTA)n Simple_repeat Simple_repeat 3 60 0 5867 164 34 2 chr13 101128906 101129209 -18615689 - L1PB3 LINE L1 -1785 4369 4077 682 259 18 0 chr13 101129217 101129383 -18615515 - L1PBa LINE L1 -5390 1473 1305 213 159 23 0 chr13 101129469 101129513 -18615385 + (TTA)n Simple_repeat Simple_repeat 2 46 0 451 248 24 40 chr13 101129760 101129885 -18615013 + MER94 DNA DNA 12 134 0 257 305 100 45 chr13 101129921 101130723 -18614175 - L1ME LINE L1 -413 5757 4900 641 122 0 1 chr13 101130852 101130952 -18613946 - L1 LINE L1 -1981 4165 4067 394 286 62 75 chr13 101131010 101131691 -18613207 - L1ME LINE L1 -1356 4790 4119 538 289 87 63 chr13 101131717 101132143 -18612755 - HAL1b LINE L1 -742 606 171 575 149 43 0 chr13 101132438 101132532 -18612366 - Tigger3(Golem) DNA MER2_type 0 3029 2932 962 275 102 58 chr13 101132535 101133170 -18611728 - L2 LINE L2 -227 3086 2423 1446 165 128 28 chr13 101133170 101133522 -18611376 + MLT1B LTR MaLR 1 387 -3 962 275 102 58 chr13 101133522 101133664 -18611234 - L2 LINE L2 -890 2423 2289 1165 164 239 16 chr13 101134326 101134632 -18610266 + THE1C LTR MaLR 1 432 0 1899 127 38 14 chr13 101134825 101135116 -18609782 - AluSx SINE Alu -14 298 1 36 0 0 0 chr13 101135333 101135369 -18609529 + AT_rich Low_complexity Low_complexity 1 36 0 291 320 87 23 chr13 101135686 101135858 -18609040 - MLT1H LTR MaLR -237 312 130 1686 171 11 14 chr13 101135858 101136144 -18608754 + AluJb SINE Alu 1 285 -27 1589 134 8 4 chr13 101136358 101136619 -18608279 - L1PA14 LINE L1 0 6161 5900 1834 97 8 0 chr13 101136619 101136878 -18608020 + L1PA14 LINE L1 5642 5902 -259 507 91 0 0 chr13 101137346 101137423 -18607475 - Tigger3(Golem) DNA MER2_type -2758 271 195 462 343 68 0 chr13 101138418 101138564 -18606334 + MIR SINE MIR 24 179 -83 20624 98 16 10 chr13 101138810 101141441 -18603457 - L1P LINE L1 -1187 4959 2285 180 0 0 0 chr13 101141441 101141461 -18603437 + (TG)n Simple_repeat Simple_repeat 1 20 0 20624 98 16 10 chr13 101141461 101143750 -18601148 - L1P LINE L1 -3861 2285 11 435 206 31 0 chr13 101143761 101143858 -18601040 - L1PB4 LINE L1 -6 6150 6051 234 62 0 0 chr13 101144307 101144339 -18600559 + (CA)n Simple_repeat Simple_repeat 2 33 0 357 284 78 9 chr13 101144542 101144658 -18600240 - L2 LINE L2 0 3313 3190 417 333 48 21 chr13 101144949 101145135 -18599763 - L2 LINE L2 -452 2862 2672 1066 188 49 14 chr13 101145559 101145847 -18599051 + MER33 DNA MER1_type 2 299 -25 834 220 6 0 chr13 101145847 101146015 -18598883 - FRAM SINE Alu -7 169 1 846 295 101 31 chr13 101146118 101146562 -18598336 - L2 LINE L2 0 3313 2839 4445 210 71 27 chr13 101146584 101147940 -18596958 + Charlie1a DNA MER1_type 6 1455 0 448 306 101 29 chr13 101147947 101148225 -18596673 - L2 LINE L2 -526 2788 2491 367 291 129 41 chr13 101148279 101148574 -18596324 - L1ME4a LINE L1 -164 5957 5637 848 203 68 0 chr13 101149254 101149417 -18595481 - FRAM SINE Alu -2 174 1 376 224 259 7 chr13 101149616 101149759 -18595139 - MER5A DNA MER1_type -10 179 1 195 260 26 52 chr13 101150382 101150459 -18594439 + MIR SINE MIR 118 192 -70 201 351 105 0 chr13 101151024 101151138 -18593760 - MIR SINE MIR -61 201 76 186 329 107 21 chr13 101153170 101153310 -18591588 + MIR SINE MIR 105 256 -6 2253 105 0 3 chr13 101153438 101153742 -18591156 + AluSx SINE Alu 1 303 -9 2294 103 0 7 chr13 101154036 101154338 -18590560 + AluY SINE Alu 1 300 -11 2145 118 51 28 chr13 101155807 101156163 -18588735 - THE1B LTR MaLR 0 364 1 2184 120 0 0 chr13 101157206 101157505 -18587393 - AluSx SINE Alu -13 299 1 2110 119 0 3 chr13 101158118 101158403 -18586495 - AluSg SINE Alu -13 297 14 545 271 45 26 chr13 101159743 101159776 -18585122 - MIR3 SINE MIR -15 193 162 2068 101 7 14 chr13 101159776 101160098 -18584800 - AluSx SINE Alu 0 320 1 545 271 45 26 chr13 101160098 101160218 -18584680 - MIR3 SINE MIR -46 162 36 239 323 92 76 chr13 101160923 101161174 -18583724 + L3 LINE CR1 334 588 -989 781 322 97 73 chr13 101162516 101162714 -18582184 + L3 LINE CR1 670 862 -715 189 0 0 0 chr13 101162714 101162735 -18582163 + (TA)n Simple_repeat Simple_repeat 2 22 0 781 322 97 73 chr13 101162735 101163319 -18581579 + L3 LINE CR1 862 1471 -106 551 276 17 0 chr13 101164648 101164764 -18580134 + L2 LINE L2 3147 3264 -8 436 259 108 29 chr13 101164918 101165057 -18579841 + MER5B DNA MER1_type 2 151 -27 27 49 0 0 chr13 101166229 101166270 -18578628 + AT_rich Low_complexity Low_complexity 1 41 0 180 111 0 0 chr13 101166345 101166372 -18578526 + (GA)n Simple_repeat Simple_repeat 2 28 0 317 122 0 0 chr13 101167263 101167312 -18577586 - MLT2D LTR ERVL 0 515 467 293 145 16 0 chr13 101167339 101167401 -18577497 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 658 266 92 34 chr13 101167454 101167747 -18577151 - MLT2D LTR ERVL -104 310 1 235 356 20 0 chr13 101167751 101167852 -18577046 - L3 LINE CR1 -310 1267 1165 264 301 133 29 chr13 101168513 101168686 -18576212 + L2 LINE L2 2895 3085 -187 2266 178 36 0 chr13 101168863 101169274 -18575624 + MSTB LTR MaLR 1 426 0 350 292 58 32 chr13 101170175 101170329 -18574569 - L2 LINE L2 0 3313 3156 276 328 97 84 chr13 101172004 101172397 -18572501 - L2 LINE L2 -8 3264 2867 216 158 0 0 chr13 101172736 101172774 -18572124 + (CGTG)n Simple_repeat Simple_repeat 1 38 0 1779 139 3 41 chr13 101173548 101173842 -18571056 + AluJb SINE Alu 1 283 -29 285 29 0 0 chr13 101173842 101173876 -18571022 + (CATA)n Simple_repeat Simple_repeat 2 35 0 995 103 5 38 chr13 101173908 101174092 -18570806 + L1MA8 LINE L1 6106 6283 -8 253 308 93 0 chr13 101175089 101175196 -18569702 + MIR SINE MIR 30 146 -62 301 344 104 6 chr13 101175905 101176068 -18568830 - MIR SINE MIR -32 230 52 786 259 26 5 chr13 101176559 101176748 -18568150 + MIR SINE MIR 1 193 -69 380 287 84 18 chr13 101177051 101177218 -18567680 - MIR SINE MIR -18 244 67 516 32 0 0 chr13 101177833 101177895 -18567003 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1964 144 0 7 chr13 101177895 101178180 -18566718 - AluSx SINE Alu -29 283 1 183 235 296 26 chr13 101178999 101179114 -18565784 + MIR SINE MIR 114 259 -3 5803 198 28 0 chr13 101179133 101181291 -18563607 + L1PA16 LINE L1 3988 6160 -6 28 0 0 0 chr13 101181319 101181347 -18563551 + AT_rich Low_complexity Low_complexity 1 28 0 1300 287 120 60 chr13 101183829 101185075 -18559823 + HAL1 LINE L1 1 1320 -1187 311 338 106 10 chr13 101185176 101185374 -18559524 + HAL1 LINE L1 1593 1809 -698 387 242 79 22 chr13 101185386 101185564 -18559334 + HAL1 LINE L1 2042 2229 -278 235 291 0 0 chr13 101185577 101185663 -18559235 + HAL1 LINE L1 2286 2371 -136 237 157 14 29 chr13 101185871 101185941 -18558957 + CT-rich Low_complexity Low_complexity 1 69 0 288 317 77 6 chr13 101186161 101186344 -18558554 + HAL1 LINE L1 1491 1686 -821 506 297 62 42 chr13 101186498 101186946 -18557952 + L1ME LINE L1 5258 5714 -456 2244 79 29 0 chr13 101187039 101187318 -18557580 - AluSg SINE Alu -23 287 1 391 239 124 0 chr13 101188108 101188221 -18556677 + MLT1L LTR MaLR 354 480 -135 322 354 51 11 chr13 101188459 101188637 -18556261 - MIR3 SINE MIR -5 203 19 21 0 0 0 chr13 101188858 101188879 -18556019 + AT_rich Low_complexity Low_complexity 1 21 0 180 321 85 118 chr13 101189501 101189747 -18555151 - L2 LINE L2 -79 3193 2956 283 225 117 92 chr13 101190820 101190940 -18553958 + MIR3 SINE MIR 1 123 -85 377 281 94 0 chr13 101191814 101191910 -18552988 + MIR SINE MIR 17 121 -87 257 114 0 0 chr13 101192050 101192094 -18552804 - L1PA15 LINE L1 -1 6164 6121 2385 92 0 6 chr13 101195421 101195735 -18549163 + AluSx SINE Alu 1 312 0 4466 54 3 7 chr13 101195780 101196353 -18548545 - L1PA7 LINE L1 -2 6152 5582 2417 59 23 0 chr13 101196353 101196694 -18548204 + L1PA7 LINE L1 5236 5583 -571 1484 159 4 13 chr13 101197311 101197580 -18547318 - AluSx SINE Alu 0 311 45 359 147 147 15 chr13 101198256 101198324 -18546574 + MLT1J LTR MaLR 374 450 -61 269 277 84 96 chr13 101198478 101198644 -18546254 + MIR3 SINE MIR 41 204 -4 309 26 0 0 chr13 101198955 101198993 -18545905 + (TA)n Simple_repeat Simple_repeat 2 39 0 2184 104 0 13 chr13 101199984 101200283 -18544615 - AluSg SINE Alu -15 295 1 538 296 80 9 chr13 101200758 101200984 -18543914 - Charlie8 DNA MER1_type -2175 242 1 971 148 22 0 chr13 101201588 101201771 -18543127 + MER53 DNA DNA 3 189 0 1054 289 42 78 chr13 101201785 101201963 -18542935 + L2 LINE L2 2584 2767 -546 2147 125 7 0 chr13 101201963 101202267 -18542631 - AluSg SINE Alu 0 310 5 1054 289 42 78 chr13 101202267 101202587 -18542311 + L2 LINE L2 2767 3097 -216 776 225 131 0 chr13 101202587 101202778 -18542120 - MER20 DNA MER1_type -2 217 2 1054 289 42 78 chr13 101202778 101202893 -18542005 + L2 LINE L2 3097 3165 -148 2173 122 0 19 chr13 101202893 101203205 -18541693 - AluSq SINE Alu -7 306 1 1054 289 42 78 chr13 101203205 101203346 -18541552 + L2 LINE L2 3165 3310 -3 307 256 56 0 chr13 101203511 101203601 -18541297 + MER20 DNA MER1_type 94 188 -31 10365 172 51 48 chr13 101204110 101205064 -18539834 - L1MA8 LINE L1 -5 7705 6755 2163 130 0 0 chr13 101205064 101205357 -18539541 - AluSx SINE Alu -19 293 1 10365 172 51 48 chr13 101205357 101206153 -18538745 - L1MA8 LINE L1 -955 6755 5963 1127 232 87 67 chr13 101206153 101206601 -18538297 - MSTB2 LTR MaLR 0 457 1 10365 172 51 48 chr13 101206601 101207529 -18537369 - L1MA8 LINE L1 -1747 5963 5014 2081 150 0 3 chr13 101207529 101207836 -18537062 + AluSx SINE Alu 1 306 -6 10365 172 51 48 chr13 101207836 101208459 -18536439 - L1MA8 LINE L1 -2696 5014 4394 8886 158 9 10 chr13 101208488 101210962 -18533936 - L1MA3 LINE L1 -187 7537 5065 6868 110 11 36 chr13 101210956 101211388 -18533510 - L1MA3 LINE L1 -4208 3357 2916 * 207 0 0 0 chr13 101211388 101211411 -18533487 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6868 110 11 36 chr13 101211411 101211933 -18532965 - L1MA3 LINE L1 -4649 2916 2435 2258 102 0 37 chr13 101211933 101212257 -18532641 - AluSx SINE Alu 0 312 1 6868 110 11 36 chr13 101212257 101212480 -18532418 - L1MA3 LINE L1 -5130 2435 2208 2998 230 61 45 chr13 101212483 101212723 -18532175 - L1MA8 LINE L1 -3687 3878 3643 2034 104 7 52 chr13 101212723 101213032 -18531866 - AluSp SINE Alu -18 295 1 2998 230 61 45 chr13 101213032 101213798 -18531100 - L1MA8 LINE L1 -3922 3643 2900 1664 173 0 3 chr13 101213798 101214081 -18530817 - AluJo SINE Alu -3 309 28 2998 230 61 45 chr13 101214081 101214697 -18530201 - L1MA8 LINE L1 -4665 2900 2295 4185 147 3 24 chr13 101214709 101215419 -18529479 - L1PB3 LINE L1 0 6211 5517 4605 118 3 9 chr13 101215419 101216119 -18528779 + L1PA13 LINE L1 5467 6163 0 12588 206 47 16 chr13 101216125 101219091 -18525807 - L1PB3 LINE L1 -685 5526 2285 279 0 0 0 chr13 101219091 101219122 -18525776 + (CA)n Simple_repeat Simple_repeat 2 32 0 12588 206 47 16 chr13 101219122 101220926 -18523972 - L1PB3 LINE L1 -3926 2285 539 207 0 0 0 chr13 101220956 101220979 -18523919 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1684 250 29 65 chr13 101220980 101221876 -18523022 - L1M3e LINE L1 -4958 2072 7 1577 277 42 11 chr13 101221889 101222419 -18522479 - L1ME3A LINE L1 -65 6105 5560 5086 147 55 4 chr13 101224517 101225335 -18519563 + L1PA16 LINE L1 5160 6028 -138 519 45 0 0 chr13 101225335 101225401 -18519497 + (GGGA)n Simple_repeat Simple_repeat 2 67 0 5086 147 55 4 chr13 101225401 101225538 -18519360 + L1PA16 LINE L1 6028 6157 -9 328 313 92 64 chr13 101225634 101226304 -18518594 + HAL1b LINE L1 47 735 -613 1601 221 78 67 chr13 101226710 101227439 -18517459 + L1MC5 LINE L1 6784 7520 -441 198 0 0 0 chr13 101227690 101227712 -18517186 + (TAGA)n Simple_repeat Simple_repeat 1 22 0 2238 88 0 3 chr13 101227715 101228031 -18516867 - AluY SINE Alu 0 315 1 26 30 0 0 chr13 101228033 101228066 -18516832 + AT_rich Low_complexity Low_complexity 1 33 0 334 291 13 0 chr13 101228713 101228792 -18516106 + L2 LINE L2 3198 3277 -36 508 311 78 9 chr13 101228851 101229070 -18515828 + MIR SINE MIR 26 259 -3 258 216 0 0 chr13 101229815 101229889 -18515009 + T-rich Low_complexity Low_complexity 1 74 0 956 26 0 0 chr13 101229896 101230011 -18514887 - L1PA3 LINE L1 0 6155 6041 24 53 0 0 chr13 101230070 101230108 -18514790 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr13 101230136 101230179 -18514719 + AT_rich Low_complexity Low_complexity 1 43 0 375 330 152 38 chr13 101230179 101230978 -18513920 - L2 LINE L2 -9 3263 2385 1045 266 144 13 chr13 101230997 101231456 -18513442 + L2 LINE L2 1961 2479 -835 696 318 80 22 chr13 101231456 101231963 -18512935 + L2 LINE L2 2677 3212 -101 782 273 24 10 chr13 101231964 101232173 -18512725 - MIR SINE MIR -14 248 37 230 320 131 16 chr13 101232644 101232766 -18512132 - L2 LINE L2 -15 3257 3122 2552 58 0 0 chr13 101232778 101233089 -18511809 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 101233496 101233524 -18511374 + AT_rich Low_complexity Low_complexity 1 28 0 443 143 13 0 chr13 101233867 101233944 -18510954 - MADE1 DNA Mariner 0 80 3 303 281 28 96 chr13 101234216 101234394 -18510504 + MIR3 SINE MIR 28 193 -15 214 222 22 0 chr13 101235591 101235636 -18509262 + L2 LINE L2 3226 3271 -1 536 218 78 22 chr13 101236450 101236629 -18508269 + MER5A DNA MER1_type 1 189 0 1742 163 7 20 chr13 101236857 101237163 -18507735 - AluJo SINE Alu -10 302 1 433 270 25 61 chr13 101237250 101237413 -18507485 + MER69A DNA AcHobo 11 167 -10 2057 114 37 45 chr13 101239955 101240333 -18504565 + THE1C LTR MaLR 1 375 0 3583 157 24 15 chr13 101240533 101241196 -18503702 - LTR65 LTR ERV1 0 669 1 325 268 54 65 chr13 101241550 101241901 -18502997 - L1MEd LINE L1 -5091 1028 682 249 288 15 0 chr13 101242868 101242934 -18501964 + (TATG)n Simple_repeat Simple_repeat 2 68 0 481 262 89 11 chr13 101243140 101243204 -18501694 - L1ME3A LINE L1 -219 5934 5876 1554 174 7 3 chr13 101243204 101243491 -18501407 - L1PA16 LINE L1 -5 6161 5874 481 262 89 11 chr13 101243491 101243697 -18501201 - L1ME3A LINE L1 -277 5876 5643 1138 211 135 41 chr13 101243697 101244040 -18500858 - MER66A LTR ERV1 -40 438 97 509 294 94 39 chr13 101244123 101244593 -18500305 - L1ME3A LINE L1 -510 5643 5200 2303 71 13 19 chr13 101244593 101244903 -18499995 - AluY SINE Alu -3 308 1 509 294 94 39 chr13 101244903 101247377 -18497521 - L1ME3A LINE L1 -953 5200 2491 219 69 0 0 chr13 101247577 101247606 -18497292 + (TG)n Simple_repeat Simple_repeat 2 30 0 206 311 0 14 chr13 101247614 101247688 -18497210 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 602 278 50 53 chr13 101248126 101248601 -18496297 - L1ME3A LINE L1 -4641 1669 1196 521 322 124 57 chr13 101248652 101249619 -18495279 - L1MEd LINE L1 -5004 1115 47 946 215 24 106 chr13 101250737 101251076 -18493822 + MLT1A1 LTR MaLR 1 311 -54 204 83 56 0 chr13 101251076 101251112 -18493786 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 188 413 49 7 chr13 101252204 101252347 -18492551 - MIR3 SINE MIR -15 193 45 188 264 22 88 chr13 101252572 101252663 -18492235 - L2 LINE L2 -991 2323 2239 1402 191 26 16 chr13 101252676 101252979 -18491919 + MLT1A1 LTR MaLR 52 357 -8 183 343 34 34 chr13 101254148 101254326 -18490572 + L2 LINE L2 2914 3091 -181 214 318 91 9 chr13 101254488 101254598 -18490300 - L2 LINE L2 -11 3261 3143 28 0 0 0 chr13 101255753 101255781 -18489117 + AT_rich Low_complexity Low_complexity 1 28 0 286 255 142 9 chr13 101256169 101256275 -18488623 + MIR SINE MIR 76 195 -67 321 284 14 0 chr13 101256403 101256477 -18488421 - L2 LINE L2 -10 3262 3188 464 264 0 0 chr13 101256814 101256924 -18487974 + MER81 DNA DNA 5 114 0 326 233 27 111 chr13 101257103 101257207 -18487691 + MIR SINE MIR 42 128 -104 2352 93 44 25 chr13 101257207 101257573 -18487325 + THE1C LTR MaLR 1 373 -2 326 233 27 111 chr13 101257573 101257630 -18487268 + MIR SINE MIR 128 188 -44 1934 219 84 6 chr13 101257708 101258257 -18486641 - L1M4 LINE L1 -3382 3262 2671 5477 182 36 18 chr13 101258308 101260216 -18484682 - L1PA16 LINE L1 -7 6159 4213 6023 220 55 50 chr13 101260224 101262843 -18482055 - L1M4 LINE L1 -3959 2687 2 185 263 105 0 chr13 101262900 101262957 -18481941 - MIR SINE MIR -88 174 112 212 260 20 0 chr13 101264119 101264169 -18480729 - MIR SINE MIR -121 141 91 25 51 0 0 chr13 101265256 101265295 -18479603 + AT_rich Low_complexity Low_complexity 1 39 0 600 213 63 0 chr13 101266850 101266977 -18477921 - MER63 DNA MER1_type -299 763 3 2182 288 68 47 chr13 101267105 101267251 -18477647 + L2 LINE L2 2100 2242 -1071 3436 66 7 2 chr13 101267251 101267706 -18477192 - L1PA10 LINE L1 0 6168 5712 2182 288 68 47 chr13 101267706 101267889 -18477009 + L2 LINE L2 2242 2420 -893 2344 118 53 3 chr13 101267889 101268246 -18476652 - THE1C LTR MaLR 0 375 1 2182 288 68 47 chr13 101268246 101269122 -18475776 + L2 LINE L2 2420 3311 -2 326 89 0 0 chr13 101269917 101269962 -18474936 - L2 LINE L2 -2 3311 3267 284 227 37 37 chr13 101270783 101270946 -18473952 + (TA)n Simple_repeat Simple_repeat 2 164 0 254 324 18 0 chr13 101270969 101271080 -18473818 + (TA)n Simple_repeat Simple_repeat 1 113 0 266 174 10 41 chr13 101271121 101271219 -18473679 + CT-rich Low_complexity Low_complexity 2 96 0 7121 55 0 0 chr13 101271973 101273428 -18471470 - L1PA7 LINE L1 -2 6152 4696 22 0 0 0 chr13 101273489 101273511 -18471387 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr13 101275717 101275761 -18469137 + (TG)n Simple_repeat Simple_repeat 1 44 0 249 33 0 0 chr13 101275760 101275790 -18469108 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1371 189 158 0 chr13 101276040 101276294 -18468604 + AluJb SINE Alu 1 294 -8 1819 268 58 48 chr13 101276727 101277030 -18467868 - L1ME3 LINE L1 -86 6076 5777 2344 112 0 6 chr13 101277030 101277344 -18467554 - AluSx SINE Alu 0 312 1 1819 268 58 48 chr13 101277344 101277457 -18467441 - L1ME3 LINE L1 -385 5777 5667 2098 135 3 6 chr13 101277457 101277768 -18467130 - AluSq SINE Alu -3 310 1 1819 268 58 48 chr13 101277768 101278604 -18466294 - L1ME3 LINE L1 -495 5667 4807 1259 185 0 0 chr13 101279174 101279390 -18465508 + L1MB7 LINE L1 4877 5092 -1054 1333 191 58 78 chr13 101279484 101279954 -18464944 + MLT2A2 LTR ERVL 3 460 -94 4897 271 50 13 chr13 101279960 101281255 -18463643 - L1PBb LINE L1 -3559 2644 1063 359 56 19 0 chr13 101281255 101281309 -18463589 + (TG)n Simple_repeat Simple_repeat 2 56 0 4897 271 50 13 chr13 101281309 101282047 -18462851 - L1PBb LINE L1 -5140 1063 354 2505 262 55 18 chr13 101282095 101282917 -18461981 + L1MB7 LINE L1 5322 6173 -11 211 245 34 122 chr13 101282930 101283077 -18461821 + MIR SINE MIR 119 252 -10 1985 151 16 0 chr13 101283651 101283956 -18460942 + AluJb SINE Alu 1 310 -2 353 314 31 116 chr13 101284019 101284433 -18460465 - L2 LINE L2 0 3272 2894 201 279 10 87 chr13 101284407 101284511 -18460387 + MIR SINE MIR 20 115 -147 * 218 220 130 60 chr13 101284597 101284697 -18460201 - MIR SINE MIR -108 154 48 2529 109 11 11 chr13 101284746 101285121 -18459777 - THE1C LTR MaLR 0 375 1 807 259 58 5 chr13 101286761 101286922 -18457976 - MIR SINE MIR -8 254 78 315 71 0 0 chr13 101286922 101286964 -18457934 + (CA)n Simple_repeat Simple_repeat 1 42 0 807 259 58 5 chr13 101286964 101287007 -18457891 - MIR SINE MIR -184 78 39 199 244 0 115 chr13 101287094 101287172 -18457726 - MIR SINE MIR -129 133 65 360 0 0 0 chr13 101287448 101287488 -18457410 + (T)n Simple_repeat Simple_repeat 1 40 0 245 369 91 47 chr13 101288071 101288345 -18456553 - L3b LINE CR1 -5 1578 1293 2161 289 103 5 chr13 101288661 101289426 -18455472 - L2 LINE L2 -1012 2302 1463 1876 159 42 74 chr13 101290233 101290636 -18454262 - MLT1B LTR MaLR 0 390 1 2173 270 83 20 chr13 101290702 101291616 -18453282 - HAL1 LINE L1 -30 2477 1506 1776 232 38 32 chr13 101291652 101292147 -18452751 - MLT1D LTR MaLR 0 505 8 854 272 179 53 chr13 101292182 101292797 -18452101 - HAL1 LINE L1 -1060 1447 680 1896 133 172 5 chr13 101292797 101293164 -18451734 + MSTA LTR MaLR 1 428 0 854 272 179 53 chr13 101293164 101293453 -18451445 - HAL1 LINE L1 -1827 680 429 412 287 111 76 chr13 101293457 101293746 -18451152 - HAL1 LINE L1 -2200 307 9 24 53 0 0 chr13 101293950 101293988 -18450910 + AT_rich Low_complexity Low_complexity 1 38 0 267 189 11 21 chr13 101294060 101294155 -18450743 + (TA)n Simple_repeat Simple_repeat 2 95 0 1354 174 10 10 chr13 101294846 101295136 -18449762 - MLT1B LTR MaLR -2 388 3 224 253 13 0 chr13 101296236 101296311 -18448587 + (TA)n Simple_repeat Simple_repeat 2 77 0 2061 208 2 30 chr13 101296709 101297109 -18447789 - MSTD LTR MaLR -2 394 6 2142 106 0 33 chr13 101297154 101297457 -18447441 + AluSg1 SINE Alu 1 293 -16 427 285 52 22 chr13 101299623 101299789 -18445109 + MIR SINE MIR 9 176 -62 30 45 0 0 chr13 101300311 101300355 -18444543 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr13 101302256 101302285 -18442613 + AT_rich Low_complexity Low_complexity 1 29 0 232 276 46 0 chr13 101303659 101303746 -18441152 + (TA)n Simple_repeat Simple_repeat 1 91 0 21 82 0 0 chr13 101305898 101305947 -18438951 + AT_rich Low_complexity Low_complexity 1 49 0 2353 38 7 14 chr13 101306693 101306985 -18437913 + L1PA5 LINE L1 5857 6146 -8 524 258 124 6 chr13 101307823 101308001 -18436897 + MIR SINE MIR 64 262 0 198 143 0 0 chr13 101308349 101308384 -18436514 + (T)n Simple_repeat Simple_repeat 1 35 0 197 339 128 9 chr13 101309626 101309735 -18435163 + MIR SINE MIR 114 235 -27 283 222 33 0 chr13 101310341 101310431 -18434467 + CT-rich Low_complexity Low_complexity 3 95 0 343 329 68 48 chr13 101310526 101310733 -18434165 - MIR SINE MIR -6 256 46 1500 161 145 13 chr13 101310954 101311258 -18433640 + MER2 DNA MER2_type 1 344 0 2047 131 7 0 chr13 101312060 101312364 -18432534 - AluSq SINE Alu 0 306 1 5479 96 11 31 chr13 101312775 101313605 -18431293 - L1PA13 LINE L1 -1 6162 5350 261 308 96 53 chr13 101313784 101314097 -18430801 - L3 LINE CR1 -115 1462 1094 272 250 48 67 chr13 101314100 101314204 -18430694 + L1MC/D LINE L1 5515 5616 -2192 1580 163 3 35 chr13 101314215 101314498 -18430400 - AluJo SINE Alu -38 274 1 1310 204 50 53 chr13 101314816 101315214 -18429684 - MLT2C1 LTR ERVL 0 397 1 305 251 196 47 chr13 101315652 101315907 -18428991 + HAL1 LINE L1 781 1073 -1434 238 192 14 14 chr13 101315908 101315981 -18428917 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 328 272 49 66 chr13 101316040 101316389 -18428509 + HAL1 LINE L1 1118 1460 -1047 21 36 0 0 chr13 101316779 101316807 -18428091 + AT_rich Low_complexity Low_complexity 1 28 0 3336 39 5 5 chr13 101316807 101317219 -18427679 - L1PA4 LINE L1 -1 6154 5743 8334 37 14 1 chr13 101317219 101318612 -18426286 + L1PA4 LINE L1 4340 5748 -406 250 309 33 101 chr13 101318620 101318861 -18426037 - L3 LINE CR1 -473 1104 891 2224 111 39 33 chr13 101318861 101319223 -18425675 - THE1B LTR MaLR 0 364 1 250 309 33 101 chr13 101319223 101319317 -18425581 - L3 LINE CR1 -686 891 792 1682 171 0 7 chr13 101320441 101320716 -18424182 + AluJb SINE Alu 3 275 -37 1596 160 72 36 chr13 101322502 101322864 -18422034 + THE1C LTR MaLR 1 375 0 2002 172 6 6 chr13 101323716 101324065 -18420833 - L1MC1 LINE L1 -5 6328 5980 263 52 69 0 chr13 101325145 101325203 -18419695 + (TA)n Simple_repeat Simple_repeat 1 62 0 180 143 0 143 chr13 101325472 101325521 -18419377 - L3 LINE CR1 -293 1284 1243 248 259 0 0 chr13 101325664 101325718 -18419180 + MER5B DNA MER1_type 1 54 -124 1323 246 19 14 chr13 101325846 101326208 -18418690 + MLT1A1 LTR MaLR 2 365 0 241 254 28 14 chr13 101326258 101326329 -18418569 + MER5A DNA MER1_type 96 167 -22 2101 152 24 21 chr13 101327733 101328107 -18416791 + THE1C LTR MaLR 1 375 0 1328 236 36 11 chr13 101328200 101328556 -18416342 + MLT1A1 LTR MaLR 1 365 0 223 209 114 48 chr13 101328698 101328803 -18416095 - MIR SINE MIR -150 112 1 774 297 77 40 chr13 101332615 101333472 -18411426 + L1ME3A LINE L1 4799 5700 -470 1646 185 0 30 chr13 101333472 101333769 -18411129 - AluJo SINE Alu -24 288 1 774 297 77 40 chr13 101333769 101333961 -18410937 + L1ME3A LINE L1 5700 5883 -287 21 0 0 0 chr13 101334294 101334315 -18410583 + AT_rich Low_complexity Low_complexity 1 21 0 328 239 64 55 chr13 101334315 101334424 -18410474 - HAL1 LINE L1 -70 2437 2328 354 117 80 12 chr13 101335318 101335481 -18409417 + (TCTA)n Simple_repeat Simple_repeat 1 174 0 276 331 136 12 chr13 101336364 101336533 -18408365 - MIR SINE MIR -34 228 39 228 224 51 82 chr13 101336911 101337009 -18407889 + L2 LINE L2 3122 3216 -97 2264 102 0 0 chr13 101337756 101338060 -18406838 + AluY SINE Alu 3 306 -5 584 285 79 14 chr13 101340419 101340696 -18404202 - MER46C DNA MER2_type -4 334 40 2074 133 7 0 chr13 101340746 101341047 -18403851 + AluSx SINE Alu 1 303 -9 292 299 161 7 chr13 101341308 101341445 -18403453 + MIR SINE MIR 31 188 -74 2008 145 0 0 chr13 101341456 101341745 -18403153 + AluJb SINE Alu 1 289 -23 324 0 0 0 chr13 101341750 101341786 -18403112 + (TG)n Simple_repeat Simple_repeat 2 37 0 1150 255 79 45 chr13 101341820 101342311 -18402587 + MLT1J LTR MaLR 2 509 -2 2921 237 54 51 chr13 101343115 101344432 -18400466 - L1ME1 LINE L1 -6 6160 4848 204 67 0 0 chr13 101344432 101344462 -18400436 + (TG)n Simple_repeat Simple_repeat 1 30 0 2921 237 54 51 chr13 101344462 101344591 -18400307 - L1ME1 LINE L1 -1318 4848 4721 2083 118 0 3 chr13 101344591 101344897 -18400001 - AluSg SINE Alu -5 305 1 2921 237 54 51 chr13 101344897 101345442 -18399456 - L1ME1 LINE L1 -1445 4721 4170 270 298 0 19 chr13 101345502 101345606 -18399292 - L1M2 LINE L1 -4359 2490 2389 198 317 85 0 chr13 101345704 101345786 -18399112 + MIR SINE MIR 46 134 -128 443 289 23 16 chr13 101345974 101346102 -18398796 + MIR SINE MIR 118 246 -16 253 352 138 14 chr13 101346184 101346329 -18398569 + L2 LINE L2 2572 2734 -580 29 0 0 0 chr13 101346349 101346378 -18398520 + AT_rich Low_complexity Low_complexity 1 29 0 404 350 91 60 chr13 101346474 101346905 -18397993 + L2 LINE L2 2829 3272 0 1865 138 6 35 chr13 101348216 101348527 -18396371 - AluSx SINE Alu -10 302 1 216 331 75 15 chr13 101348893 101349026 -18395872 - L3 LINE CR1 -861 716 576 922 171 0 0 chr13 101349338 101349484 -18395414 - FRAM SINE Alu -21 155 10 1375 201 8 11 chr13 101349496 101349760 -18395138 - AluJb SINE Alu -16 296 34 5276 137 23 39 chr13 101349760 101350414 -18394484 - L1MA8 LINE L1 -47 6244 5610 1751 162 14 3 chr13 101350414 101350711 -18394187 - AluJo SINE Alu -6 306 7 5276 137 23 39 chr13 101350711 101351049 -18393849 - L1MA8 LINE L1 -681 5610 5268 * 6303 142 52 7 chr13 101351044 101352194 -18392704 - L1MA8 LINE L1 -1094 5052 3851 184 284 157 0 chr13 101352417 101352519 -18392379 + MIR SINE MIR 124 241 -21 412 297 199 11 chr13 101352521 101352878 -18392020 + L2 LINE L2 2378 2801 -513 277 306 34 48 chr13 101352863 101353010 -18391888 + L2 LINE L2 3168 3312 -1 * 22 0 0 0 chr13 101354021 101354043 -18390855 + AT_rich Low_complexity Low_complexity 1 22 0 2851 94 0 3 chr13 101354613 101355005 -18389893 + L1PA12 LINE L1 5778 6168 0 703 306 187 34 chr13 101355073 101356101 -18388797 + L1M4 LINE L1 2300 3484 -2662 2905 10 0 0 chr13 101356105 101356419 -18388479 + AluYb8 SINE Alu 1 314 -4 1334 167 70 53 chr13 101356543 101356884 -18388014 - MLT1D LTR MaLR -158 347 1 21 36 0 0 chr13 101356898 101356926 -18387972 + AT_rich Low_complexity Low_complexity 1 28 0 237 314 12 12 chr13 101357031 101357117 -18387781 + L1MC/D LINE L1 5622 5707 -2101 413 262 5 64 chr13 101357236 101357423 -18387475 + MER104 DNA Tc2 2 177 -3 2792 281 97 26 chr13 101357508 101357981 -18386917 + L2 LINE L2 1636 2074 -1239 531 0 0 0 chr13 101357981 101358040 -18386858 + (TG)n Simple_repeat Simple_repeat 2 60 0 2792 281 97 26 chr13 101358040 101359036 -18385862 + L2 LINE L2 2074 3304 -9 196 261 0 22 chr13 101360416 101360462 -18384436 + MER5A DNA MER1_type 139 183 -6 334 214 8 68 chr13 101361154 101361271 -18383627 + L1M4 LINE L1 2204 2313 -3833 180 326 148 7 chr13 101363883 101364018 -18380880 + MIR3 SINE MIR 41 194 -14 394 352 67 5 chr13 101364925 101365118 -18379780 - MIR SINE MIR -47 215 11 232 325 17 17 chr13 101366495 101366612 -18378286 - L2 LINE L2 -2484 830 714 406 287 38 103 chr13 101366779 101367120 -18377778 - MLT1K LTR MaLR -145 443 125 207 239 22 0 chr13 101367503 101367549 -18377349 + L2 LINE L2 3265 3311 -2 586 320 63 47 chr13 101368190 101368680 -18376218 - L1M4 LINE L1 -2385 3761 3264 192 125 0 0 chr13 101369317 101369349 -18375549 + (TATATG)n Simple_repeat Simple_repeat 1 32 0 1282 209 82 50 chr13 101369923 101370352 -18374546 + MLT1C LTR MaLR 18 467 0 209 161 0 0 chr13 101370506 101370537 -18374361 + (TG)n Simple_repeat Simple_repeat 2 32 0 238 232 0 0 chr13 101370541 101370597 -18374301 + L1MC4 LINE L1 6648 6703 -1339 28 86 0 0 chr13 101370632 101370702 -18374196 + AT_rich Low_complexity Low_complexity 1 70 0 1302 295 80 32 chr13 101371110 101372587 -18372311 - L1ME LINE L1 -554 5852 4267 2335 82 3 0 chr13 101372587 101372879 -18372019 - AluSx SINE Alu -18 294 2 1302 295 80 32 chr13 101372879 101373193 -18371705 - L1ME LINE L1 -2139 4267 3969 324 286 55 42 chr13 101373308 101373599 -18371299 - L1ME LINE L1 -4700 1684 1397 2596 220 30 66 chr13 101373788 101374114 -18370784 - L1ME2 LINE L1 -28 6205 5869 2289 116 0 0 chr13 101374114 101374424 -18370474 - AluSg SINE Alu 0 310 1 2596 220 30 66 chr13 101374424 101375252 -18369646 - L1ME2 LINE L1 -364 5869 5087 747 238 78 28 chr13 101375260 101375621 -18369277 - L1ME2 LINE L1 -1490 4725 4347 955 263 36 0 chr13 101375624 101375875 -18369023 - MLT1E LTR MaLR 0 593 334 592 247 51 0 chr13 101375977 101376135 -18368763 - MLT1E LTR MaLR -427 166 1 3860 249 117 22 chr13 101376174 101378409 -18366489 - L1ME2 LINE L1 -1925 4290 1876 228 370 37 0 chr13 101378463 101378598 -18366300 - L1ME2 LINE L1 -5406 799 660 372 236 94 0 chr13 101379122 101379249 -18365649 - HAL1b LINE L1 -456 892 754 32 0 0 0 chr13 101379273 101379305 -18365593 + AT_rich Low_complexity Low_complexity 1 32 0 402 349 19 19 chr13 101379597 101379855 -18365043 - HAL1 LINE L1 -825 1682 1425 543 172 0 0 chr13 101379870 101379969 -18364929 - AluJb SINE Alu -6 306 208 26 0 0 0 chr13 101380672 101380698 -18364200 + AT_rich Low_complexity Low_complexity 1 26 0 180 176 0 0 chr13 101380816 101380850 -18364048 + (TA)n Simple_repeat Simple_repeat 1 34 0 2168 123 0 7 chr13 101380957 101381259 -18363639 + AluSx SINE Alu 1 300 -12 247 233 54 0 chr13 101381972 101382101 -18362797 + (TA)n Simple_repeat Simple_repeat 2 137 0 1072 145 0 0 chr13 101382101 101382260 -18362638 + AluSg/x SINE Alu 132 290 -22 30 83 0 0 chr13 101382286 101382358 -18362540 + AT_rich Low_complexity Low_complexity 1 72 0 651 265 79 5 chr13 101382370 101382559 -18362339 + MIR SINE MIR 39 241 -21 194 277 113 16 chr13 101383165 101383302 -18361596 - MIR3 SINE MIR -71 137 1 252 203 31 164 chr13 101383725 101383818 -18361080 - MER3 DNA MER1_type -18 191 118 2497 63 3 0 chr13 101383818 101384133 -18360765 - AluYb8 SINE Alu -2 316 1 252 203 31 164 chr13 101384133 101384167 -18360731 - MER3 DNA MER1_type -91 118 81 516 68 0 0 chr13 101384339 101384412 -18360486 + (TC)n Simple_repeat Simple_repeat 1 73 0 336 285 81 47 chr13 101387626 101387798 -18357100 - MER5A DNA MER1_type -11 178 1 1404 35 0 0 chr13 101388059 101388230 -18356668 - L1PA2 LINE L1 -2 6153 5983 360 0 0 0 chr13 101388496 101388536 -18356362 + (TG)n Simple_repeat Simple_repeat 1 40 0 1545 57 0 0 chr13 101389721 101389915 -18354983 - L1PA2 LINE L1 -359 5796 5603 2349 29 0 0 chr13 101389915 101390191 -18354707 + L1PA5 LINE L1 5873 6150 -4 26170 105 13 47 chr13 101391636 101398111 -18346787 + L1PA7 LINE L1 12 6172 0 21 36 0 0 chr13 101398520 101398548 -18346350 + AT_rich Low_complexity Low_complexity 1 28 0 199 303 13 26 chr13 101399756 101399832 -18345066 - MIR SINE MIR -109 153 79 908 250 10 15 chr13 101399986 101400182 -18344716 - MER91A DNA MER1_type -1 195 1 21 57 0 0 chr13 101403113 101403148 -18341750 + AT_rich Low_complexity Low_complexity 1 35 0 2038 139 0 3 chr13 101403647 101403941 -18340957 + AluSx SINE Alu 1 293 -19 201 39 0 0 chr13 101404413 101404439 -18340459 + (CAA)n Simple_repeat Simple_repeat 2 27 0 243 352 101 6 chr13 101404533 101404692 -18340206 - MIR SINE MIR -14 248 75 * 685 281 99 60 chr13 101404688 101405275 -18339623 + L2 LINE L2 2704 3313 0 21 0 0 0 chr13 101405477 101405498 -18339400 + AT_rich Low_complexity Low_complexity 1 21 0 2735 225 45 42 chr13 101405498 101407114 -18337784 - L1ME1 LINE L1 -18 6542 4930 2414 243 63 52 chr13 101407292 101408992 -18335906 - L1ME1 LINE L1 -3485 3055 1327 369 62 0 0 chr13 101409022 101409070 -18335828 + (CA)n Simple_repeat Simple_repeat 2 49 0 182 377 0 0 chr13 101409323 101409376 -18335522 - L2 LINE L2 -10 3303 3251 486 283 26 0 chr13 101410155 101410307 -18334591 - MER117 DNA MER1_type -36 161 6 344 268 32 19 chr13 101410677 101410834 -18334064 + (TA)n Simple_repeat Simple_repeat 1 159 0 28 29 0 0 chr13 101414021 101414056 -18330842 + AT_rich Low_complexity Low_complexity 1 35 0 572 311 36 22 chr13 101414076 101414301 -18330597 - MIR SINE MIR -29 233 6 3562 176 76 69 chr13 101416459 101417316 -18327582 - MER21B LTR ERV1 0 863 1 529 217 23 47 chr13 101417336 101417465 -18327433 + MIR SINE MIR 63 188 -74 1754 164 11 58 chr13 101417512 101417889 -18327009 - MLT1B LTR MaLR -5 385 27 1961 13 0 0 chr13 101417903 101418133 -18326765 - L1P1 LINE L1 -532 5623 5394 3686 16 0 0 chr13 101418133 101418556 -18326342 + L1PA3 LINE L1 5732 6155 0 245 221 15 73 chr13 101418612 101418680 -18326218 + MER21B LTR ERV1 22 85 -778 690 100 0 0 chr13 101418689 101418789 -18326109 + (TA)n Simple_repeat Simple_repeat 2 101 0 187 333 74 59 chr13 101418953 101419088 -18325810 - MIR3 SINE MIR -70 138 2 966 284 152 28 chr13 101419392 101419991 -18324907 + L2 LINE L2 1441 2113 -1201 217 287 163 7 chr13 101420357 101420494 -18324404 - MIR SINE MIR -80 128 18 424 313 140 14 chr13 101420573 101420995 -18323903 - MLT1L LTR MaLR -7 608 134 1697 162 73 25 chr13 101423904 101424262 -18320636 + THE1C LTR MaLR 1 375 0 498 225 49 42 chr13 101424306 101424448 -18320450 - MIR SINE MIR -3 259 117 546 323 36 28 chr13 101425707 101425958 -18318940 + MIR SINE MIR 10 262 0 1711 166 9 16 chr13 101426035 101426355 -18318543 + MLT1C LTR MaLR 1 318 -149 1442 73 0 0 chr13 101426464 101426643 -18318255 + AluY SINE Alu 119 297 -14 845 238 45 97 chr13 101426984 101427409 -18317489 + MLT1I LTR MaLR 7 409 0 282 351 16 31 chr13 101428198 101428389 -18316509 - MER5A DNA MER1_type -1 188 1 195 311 122 0 chr13 101428402 101428492 -18316406 + L2 LINE L2 3142 3242 -30 310 271 157 12 chr13 101428519 101428685 -18316213 + MIR SINE MIR 37 226 -36 484 264 43 31 chr13 101429218 101429381 -18315517 - MIR SINE MIR -8 254 90 180 0 0 0 chr13 101431540 101431560 -18313338 + (CA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr13 101432764 101432785 -18312113 + AT_rich Low_complexity Low_complexity 1 21 0 652 276 51 34 chr13 101432907 101433259 -18311639 - HAL1 LINE L1 -746 1761 1404 414 303 90 73 chr13 101433280 101433679 -18311219 - HAL1 LINE L1 -1160 1347 942 1646 182 90 43 chr13 101433803 101434249 -18310649 - MLT1C LTR MaLR 0 467 1 1008 173 64 84 chr13 101437733 101438092 -18306806 + L1MC5 LINE L1 6929 7280 -681 322 232 48 104 chr13 101438450 101438533 -18306365 + MIR SINE MIR 24 99 -109 2109 109 0 67 chr13 101438533 101438862 -18306036 + AluSx SINE Alu 1 307 -5 322 232 48 104 chr13 101438862 101438903 -18305995 + MIR SINE MIR 99 141 -67 484 330 60 19 chr13 101439258 101439473 -18305425 - MIR SINE MIR -19 243 20 440 261 9 0 chr13 101440240 101440355 -18304543 + MIR SINE MIR 147 262 0 350 283 149 35 chr13 101441999 101442372 -18302526 + L1ME4a LINE L1 5618 6049 -72 2185 131 10 0 chr13 101442372 101442678 -18302220 - AluSx SINE Alu -3 309 1 350 283 149 35 chr13 101442678 101442739 -18302159 + L1ME4a LINE L1 6049 6102 -19 210 343 37 56 chr13 101443598 101443706 -18301192 - L2 LINE L2 0 3313 3208 261 284 126 32 chr13 101444693 101444788 -18300110 + L2 LINE L2 3208 3311 -2 26 0 0 0 chr13 101444876 101444902 -18299996 + AT_rich Low_complexity Low_complexity 1 26 0 250 306 102 9 chr13 101445919 101446027 -18298871 + L2 LINE L2 3155 3272 0 297 291 95 56 chr13 101447292 101447471 -18297427 + MIR SINE MIR 44 229 -33 4303 89 3 27 chr13 101448086 101448678 -18296220 - L1PA13 LINE L1 -1 6162 5585 2047 195 3 14 chr13 101448701 101449070 -18295828 + MER47A DNA MER2_type 1 365 -1 310 314 178 0 chr13 101449684 101449875 -18295023 - L3 LINE CR1 -12 1565 1341 421 304 85 36 chr13 101450134 101450358 -18294540 + MIR SINE MIR 21 255 -7 2397 102 0 0 chr13 101450437 101450742 -18294156 + AluSx SINE Alu 4 308 -4 188 310 159 9 chr13 101450766 101450879 -18294019 + MIR SINE MIR 62 191 -71 361 307 88 7 chr13 101453682 101453876 -18291022 - MIR SINE MIR -15 247 36 189 0 0 0 chr13 101454265 101454286 -18290612 + (TC)n Simple_repeat Simple_repeat 2 22 0 282 29 0 0 chr13 101454366 101454401 -18290497 + (CA)n Simple_repeat Simple_repeat 2 36 0 646 258 99 15 chr13 101455533 101455894 -18289004 - MLT1J LTR MaLR -33 478 47 186 167 0 0 chr13 101458749 101458785 -18286113 + GA-rich Low_complexity Low_complexity 2 37 0 2475 88 112 6 chr13 101458983 101459322 -18285576 + THE1C LTR MaLR 1 375 0 305 195 0 13 chr13 101459530 101459607 -18285291 + (CA)n Simple_repeat Simple_repeat 1 76 0 280 241 0 12 chr13 101460137 101460220 -18284678 - L1ME LINE L1 -357 5764 5683 1003 259 111 22 chr13 101460427 101460797 -18284101 + LTR16A LTR ERVL 41 443 -7 21 36 0 0 chr13 101461046 101461074 -18283824 + AT_rich Low_complexity Low_complexity 1 28 0 2023 83 83 0 chr13 101461533 101461809 -18283089 - AluY SINE Alu -12 299 1 253 129 16 16 chr13 101461875 101461937 -18282961 + (TA)n Simple_repeat Simple_repeat 1 62 0 2343 104 0 0 chr13 101462156 101462464 -18282434 + AluSc SINE Alu 1 308 -1 22 0 0 0 chr13 101463338 101463360 -18281538 + AT_rich Low_complexity Low_complexity 1 22 0 211 263 137 21 chr13 101464601 101464696 -18280202 + L2 LINE L2 3145 3250 -22 384 76 54 11 chr13 101464723 101464815 -18280083 + (TA)n Simple_repeat Simple_repeat 2 97 0 24 32 0 0 chr13 101466304 101466335 -18278563 + AT_rich Low_complexity Low_complexity 1 31 0 589 313 41 59 chr13 101466844 101467043 -18277855 - MER115 DNA AcHobo -240 453 263 3307 110 41 23 chr13 101467043 101467526 -18277372 - LTR22B LTR ERVK 0 492 1 589 313 41 59 chr13 101467526 101467716 -18277182 - MER115 DNA AcHobo -430 263 71 856 218 19 70 chr13 101469368 101469625 -18275273 + MLT1I LTR MaLR 117 360 -49 309 68 0 0 chr13 101470362 101470406 -18274492 + (TC)n Simple_repeat Simple_repeat 2 45 0 414 0 0 0 chr13 101470406 101470452 -18274446 + (CA)n Simple_repeat Simple_repeat 1 46 0 2366 194 36 34 chr13 101471801 101472110 -18272788 + MER89 LTR ERV1 1 313 -246 2634 112 28 14 chr13 101472110 101472468 -18272430 + THE1B LTR MaLR 2 364 0 2366 194 36 34 chr13 101472468 101472716 -18272182 + MER89 LTR ERV1 313 559 0 1856 258 55 34 chr13 101472875 101473456 -18271442 - MLT1E LTR MaLR 0 593 1 2425 76 0 3 chr13 101474586 101474887 -18270011 + AluSx SINE Alu 1 300 -12 1663 261 55 53 chr13 101475632 101476494 -18268404 + L2 LINE L2 2460 3313 0 382 312 7 27 chr13 101477115 101477292 -18267606 + MER5A DNA MER1_type 6 189 0 233 244 51 26 chr13 101477521 101477599 -18267299 + MIR SINE MIR 111 190 -72 252 227 239 11 chr13 101477886 101477974 -18266924 + MIR SINE MIR 77 184 -78 21 0 0 0 chr13 101478406 101478427 -18266471 + AT_rich Low_complexity Low_complexity 1 21 0 2383 157 73 18 chr13 101478840 101479280 -18265618 - MLT2C2 LTR ERVL 0 464 1 531 223 9 0 chr13 101479947 101480034 -18264864 - Tigger5 DNA MER2_type 0 2323 2236 316 167 106 15 chr13 101480034 101480100 -18264798 + Tigger2 DNA MER2_type 2 73 -2645 * 2442 126 64 28 chr13 101480099 101480521 -18264377 + Tigger2 DNA MER2_type 2281 2717 -1 900 124 7 0 chr13 101480521 101480658 -18264240 - Tigger5 DNA MER2_type -83 2240 2103 398 207 172 0 chr13 101480656 101480772 -18264126 - Tigger5 DNA MER2_type -2187 136 1 * 353 58 19 0 chr13 101481026 101481078 -18263820 + (ATG)n Simple_repeat Simple_repeat 2 54 0 182 171 29 0 chr13 101481143 101481182 -18263716 - MIR SINE MIR -109 153 115 24 0 0 0 chr13 101481733 101481757 -18263141 + AT_rich Low_complexity Low_complexity 1 24 0 505 246 15 46 chr13 101482167 101482297 -18262601 - L2 LINE L2 0 3313 3188 192 40 0 0 chr13 101482310 101482335 -18262563 + (CA)n Simple_repeat Simple_repeat 2 26 0 1968 142 23 3 chr13 101482431 101482734 -18262164 - AluSx SINE Alu -3 309 1 2117 275 97 15 chr13 101482748 101483822 -18261076 - L1ME3A LINE L1 0 6170 5009 649 280 69 23 chr13 101483967 101484185 -18260713 - MIR SINE MIR -3 259 32 396 0 0 0 chr13 101485358 101485402 -18259496 + (CA)n Simple_repeat Simple_repeat 2 45 0 387 254 26 0 chr13 101485914 101486028 -18258870 - MER97a DNA MER1_type? -726 168 52 201 178 0 0 chr13 101487150 101487195 -18257703 + (CA)n Simple_repeat Simple_repeat 2 46 0 268 345 35 0 chr13 101487378 101487465 -18257433 - L2 LINE L2 -185 3087 2998 4488 200 35 6 chr13 101487910 101489222 -18255676 - L1MB5 LINE L1 -12 6162 4810 2650 129 8 3 chr13 101489413 101489786 -18255112 - THE1C LTR MaLR 0 375 1 414 340 60 13 chr13 101491195 101491510 -18253388 + L2 LINE L2 1982 2311 -1003 2557 119 8 16 chr13 101491649 101492026 -18252872 + THE1C LTR MaLR 2 375 0 217 293 110 12 chr13 101492127 101492209 -18252689 + L2 LINE L2 3136 3225 -47 251 355 70 42 chr13 101492265 101492578 -18252320 + L2 LINE L2 2656 2977 -337 349 302 0 0 chr13 101493638 101493724 -18251174 - MIR SINE MIR -67 141 56 180 307 80 0 chr13 101493948 101494036 -18250862 + MIR SINE MIR 94 188 -74 372 215 161 7 chr13 101494130 101494279 -18250619 - MER69 DNA AcHobo -104 2422 2251 683 151 50 0 chr13 101494286 101494405 -18250493 - L1MB4 LINE L1 -1 6179 6055 415 330 103 51 chr13 101494481 101494832 -18250066 + L2 LINE L2 2904 3272 0 344 238 38 150 chr13 101494920 101495240 -18249658 - L2 LINE L2 0 3313 3030 1522 238 125 31 chr13 101496128 101496585 -18248313 - MLT2B1 LTR ERVL 0 554 1 1875 212 58 0 chr13 101497092 101497436 -18247462 + MLT1A1 LTR MaLR 1 364 -1 2256 129 0 0 chr13 101497700 101498010 -18246888 + AluSg SINE Alu 1 310 0 2549 57 0 0 chr13 101498257 101498555 -18246343 - AluY SINE Alu -13 298 1 195 42 0 0 chr13 101498989 101499013 -18245885 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 662 280 145 13 chr13 101499113 101499588 -18245310 - L1ME4a LINE L1 -237 5884 5347 1604 95 0 0 chr13 101500902 101501133 -18243765 + L1P LINE L1 4741 4971 -1175 1460 201 71 21 chr13 101501231 101501653 -18243245 - L1ME2 LINE L1 -7 6157 5715 383 304 55 0 chr13 101501680 101501861 -18243037 + L1M4 LINE L1 5100 5290 -856 1135 192 45 42 chr13 101501861 101502173 -18242725 - L1ME2 LINE L1 -500 5664 5352 510 186 85 32 chr13 101504683 101504871 -18240027 - L1ME2 LINE L1 -782 5364 5167 1904 155 16 26 chr13 101504884 101505271 -18239627 + L1MA7 LINE L1 5785 6167 -124 600 227 31 0 chr13 101505278 101505406 -18239492 + MSTD LTR MaLR 3 134 -262 603 219 60 0 chr13 101505434 101505585 -18239313 + MSTD LTR MaLR 215 374 -22 623 149 7 21 chr13 101505585 101505726 -18239172 + L1MA7 LINE L1 6149 6287 -4 887 249 30 49 chr13 101505742 101506141 -18238757 - L1MEc LINE L1 -3269 2946 2553 2055 126 4 0 chr13 101506141 101506443 -18238455 - AluSx SINE Alu 0 307 5 887 249 30 49 chr13 101506443 101506471 -18238427 - L1MEc LINE L1 -3662 2553 2526 277 217 0 0 chr13 101506490 101506550 -18238348 + LTR40a LTR ERVL 1 60 -459 462 307 73 21 chr13 101506584 101506776 -18238122 - L1MEc LINE L1 -4751 1645 1444 2418 140 3 3 chr13 101506804 101507168 -18237730 - THE1B LTR MaLR 0 364 1 10610 111 35 2 chr13 101507168 101508696 -18236202 - THE1B-int LTR MaLR 0 1580 2 2188 114 16 27 chr13 101508697 101509009 -18235889 - THE1B LTR MaLR 0 364 55 2425 186 33 74 chr13 101509009 101509647 -18235251 - LTR9 LTR ERV1 0 612 1 2188 114 16 27 chr13 101509647 101509702 -18235196 - THE1B LTR MaLR -309 55 1 521 255 35 65 chr13 101509759 101510131 -18234767 - L1MEc LINE L1 -5074 1322 962 1185 200 22 106 chr13 101510184 101510599 -18234299 - MLT1B LTR MaLR 0 390 11 1708 279 102 16 chr13 101510609 101511373 -18233525 - L1MEc LINE L1 -5499 897 68 1283 278 68 25 chr13 101511419 101512181 -18232717 - L2 LINE L2 -5 3308 2505 196 237 8 168 chr13 101512785 101512814 -18232084 - L2 LINE L2 0 3313 3281 1555 165 41 31 chr13 101512814 101513105 -18231793 + AluJo SINE Alu 5 298 -14 196 237 8 168 chr13 101513105 101513206 -18231692 - L2 LINE L2 -32 3281 3204 1373 332 97 37 chr13 101513502 101514141 -18230757 - L2 LINE L2 -585 2729 1993 2695 154 120 67 chr13 101514141 101514831 -18230067 - LTR8A LTR ERV1 0 727 1 1373 332 97 37 chr13 101514831 101515316 -18229582 - L2 LINE L2 -1321 1993 1538 1080 173 7 5 chr13 101515373 101515552 -18229346 + MLT1C LTR MaLR 1 178 -212 1974 154 0 0 chr13 101515552 101515838 -18229060 + AluSx SINE Alu 1 286 -26 1080 173 7 5 chr13 101515838 101515862 -18229036 + MLT1C LTR MaLR 178 200 -190 496 144 289 0 chr13 101515869 101515959 -18228939 + AluJb SINE Alu 6 121 -191 512 159 0 53 chr13 101515964 101516134 -18228764 + (TA)n Simple_repeat Simple_repeat 1 161 0 942 175 7 13 chr13 101516136 101516290 -18228608 + AluJb SINE Alu 138 290 -22 1070 167 100 37 chr13 101516312 101516581 -18228317 + MLT1C LTR MaLR 178 463 -4 264 336 61 37 chr13 101516629 101516843 -18228055 - L2 LINE L2 -1879 1435 1217 459 0 0 0 chr13 101516846 101516897 -18228001 + (TG)n Simple_repeat Simple_repeat 2 52 0 206 331 80 45 chr13 101518279 101518416 -18226482 - MIR SINE MIR -73 135 19 420 274 23 89 chr13 101518633 101518848 -18226050 - MIR SINE MIR -55 207 12 197 390 0 0 chr13 101518841 101518900 -18225998 - L2 LINE L2 -8 3264 3206 * 197 251 98 17 chr13 101519003 101519090 -18225808 + MIR SINE MIR 72 144 -64 355 322 82 30 chr13 101520214 101520481 -18224417 + L1ME4a LINE L1 4567 4847 -1299 343 286 148 33 chr13 101520921 101521253 -18223645 + L1ME4a LINE L1 5319 5688 -433 264 231 68 8 chr13 101521436 101521553 -18223345 + L1ME4a LINE L1 5987 6110 -11 353 287 110 68 chr13 101521775 101522085 -18222813 + MLT1K LTR MaLR 155 477 -111 1054 257 110 35 chr13 101522634 101523207 -18221691 - MLT2E LTR ERVL 0 628 3 1939 194 30 28 chr13 101524819 101525252 -18219646 + Tigger2a DNA MER2_type 1 434 0 2113 148 0 0 chr13 101525299 101525610 -18219288 - AluSx SINE Alu -1 311 1 1143 216 96 48 chr13 101527193 101527591 -18217307 + MER96B DNA MER1_type 1 417 0 2028 93 0 0 chr13 101527961 101528218 -18216680 - AluSg SINE Alu -4 306 50 212 83 0 28 chr13 101528766 101528802 -18216096 + (TG)n Simple_repeat Simple_repeat 2 36 0 279 235 15 0 chr13 101528850 101528918 -18215980 - MER103 DNA DNA -25 141 73 1991 141 6 57 chr13 101528918 101529272 -18215626 + MER1B DNA MER1_type 1 336 -1 21 0 0 0 chr13 101529698 101529719 -18215179 + AT_rich Low_complexity Low_complexity 1 21 0 2263 143 24 5 chr13 101531271 101531684 -18213214 + L1MA4 LINE L1 5541 5961 -339 13441 180 58 27 chr13 101531693 101533106 -18211792 - L1M1 LINE L1 -743 6822 5453 192 77 0 0 chr13 101533106 101533132 -18211766 + (TTA)n Simple_repeat Simple_repeat 2 27 0 13441 180 58 27 chr13 101533132 101535349 -18209549 - L1M1 LINE L1 -2112 5453 3231 2609 168 40 4 chr13 101535363 101535838 -18209060 - L1M1 LINE L1 -4831 1734 1243 1008 130 0 39 chr13 101535842 101536049 -18208849 + L1MA7 LINE L1 6093 6291 0 417 302 87 23 chr13 101536268 101536440 -18208458 - MIR3 SINE MIR -7 201 19 28489 110 9 25 chr13 101537163 101543627 -18201271 + L1PA7 LINE L1 8 6464 -5 457 260 196 0 chr13 101545525 101545698 -18199200 - MIR SINE MIR -31 231 25 1488 230 44 66 chr13 101546021 101546226 -18198672 + MER90 LTR ERV1 56 264 -350 2098 134 0 7 chr13 101546226 101546531 -18198367 - AluSx SINE Alu -9 303 1 1488 230 44 66 chr13 101546531 101546872 -18198026 + MER90 LTR ERV1 264 590 -24 239 333 31 57 chr13 101547289 101547481 -18197417 + L2 LINE L2 2594 2780 -534 2277 104 102 76 chr13 101547605 101548038 -18196860 - MLT2A1 LTR ERVL 0 444 1 1131 245 50 26 chr13 101548149 101548573 -18196325 - Zaphod DNA AcHobo -2 4029 3596 1676 212 167 41 chr13 101548575 101549401 -18195497 - Zaphod DNA AcHobo -3044 987 58 2163 129 0 0 chr13 101549498 101549800 -18195098 - AluSx SINE Alu -10 302 1 2460 71 3 0 chr13 101550004 101550313 -18194585 + AluSp SINE Alu 2 311 -2 204 310 129 12 chr13 101551176 101551347 -18193551 - L2 LINE L2 -174 3139 2949 192 160 40 60 chr13 101551646 101551696 -18193202 + L2 LINE L2 3264 3312 -1 * 216 296 0 0 chr13 101551694 101551748 -18193150 + MIR SINE MIR 97 150 -112 1902 301 156 43 chr13 101551754 101553193 -18191705 - L2 LINE L2 -664 2650 1050 249 286 0 11 chr13 101554173 101554264 -18190634 + L3b LINE CR1 1178 1267 -316 284 237 17 0 chr13 101554705 101554764 -18190134 - MIR SINE MIR -71 137 78 558 221 9 9 chr13 101555243 101555356 -18189542 - MER81 DNA DNA 0 114 2 283 219 39 10 chr13 101555505 101555635 -18189263 + L1ME LINE L1 5730 5819 -302 1595 244 74 48 chr13 101555693 101556271 -18188627 - MLT1E LTR MaLR 0 593 1 2127 115 7 3 chr13 101556673 101556960 -18187938 + AluSx SINE Alu 1 288 -24 424 258 0 0 chr13 101557180 101557269 -18187629 + MER5A DNA MER1_type 18 106 -83 250 269 16 93 chr13 101557399 101557581 -18187317 + L1ME LINE L1 5689 5856 -314 408 309 34 29 chr13 101557919 101558158 -18186740 - L1MC/D LINE L1 -2179 5606 5367 309 262 37 47 chr13 101559809 101559916 -18184982 - MIR SINE MIR -69 139 34 27 0 0 0 chr13 101561047 101561074 -18183824 + AT_rich Low_complexity Low_complexity 1 27 0 195 354 119 23 chr13 101561122 101561424 -18183474 + L2 LINE L2 2640 2970 -344 341 337 0 0 chr13 101561752 101561841 -18183057 + L2 LINE L2 3123 3211 -61 218 327 0 0 chr13 101561898 101561953 -18182945 - MER91A DNA MER1_type -141 55 1 2304 78 0 0 chr13 101562212 101562493 -18182405 - AluY SINE Alu -3 308 28 313 271 234 0 chr13 101563740 101563847 -18181051 + L2 LINE L2 3180 3311 -2 432 346 55 13 chr13 101563896 101564133 -18180765 - MIR SINE MIR -14 248 2 3867 172 19 35 chr13 101564234 101564325 -18180573 + Tigger6a DNA MER2_type 2 93 -1504 2166 135 0 0 chr13 101564325 101564622 -18180276 - AluSx SINE Alu -11 301 5 3867 172 19 35 chr13 101564622 101565334 -18179564 + Tigger6a DNA MER2_type 93 792 -291 1453 148 31 74 chr13 101566156 101566480 -18178418 - AluSx SINE Alu 0 312 3 2124 134 0 0 chr13 101567766 101568056 -18176842 + AluSc SINE Alu 1 290 -19 285 254 0 0 chr13 101568056 101568127 -18176771 - 7SK RNA RNA -2 191 121 592 171 0 16 chr13 101568171 101568294 -18176604 - 7SK RNA RNA -72 121 1 637 168 114 23 chr13 101568296 101568516 -18176382 + Tigger6a DNA MER2_type 796 1035 -48 1573 189 19 36 chr13 101570033 101570393 -18174505 + MLT1A1 LTR MaLR 12 365 0 32 26 0 0 chr13 101570465 101570504 -18174394 + AT_rich Low_complexity Low_complexity 1 39 0 348 289 0 0 chr13 101571128 101571211 -18173687 + MIR3 SINE MIR 123 205 -3 389 196 49 14 chr13 101572037 101572180 -18172718 + (TA)n Simple_repeat Simple_repeat 2 149 0 449 340 55 5 chr13 101572354 101572554 -18172344 - MIR SINE MIR -13 249 40 4993 211 70 16 chr13 101572653 101574024 -18170874 - Charlie1a DNA MER1_type -6 1449 5 2062 115 0 11 chr13 101574274 101574583 -18170315 - AluSx SINE Alu 0 306 1 2238 141 81 0 chr13 101574895 101575291 -18169607 - MSTA LTR MaLR 0 428 1 739 286 14 38 chr13 101575599 101575809 -18169089 + MIR SINE MIR 13 217 -45 219 233 0 0 chr13 101575832 101575875 -18169023 + (CAT)n Simple_repeat Simple_repeat 3 45 0 451 308 13 13 chr13 101578333 101578560 -18166338 - L1ME LINE L1 -568 5581 5355 502 245 58 29 chr13 101578569 101578810 -18166088 - L1ME LINE L1 -816 5313 5066 340 273 145 76 chr13 101578973 101579179 -18165719 + MLT1J2 LTR MaLR 80 321 -129 1528 204 102 6 chr13 101579179 101579512 -18165386 + MLT1A1 LTR MaLR 1 365 0 340 273 145 76 chr13 101579512 101579649 -18165249 + MLT1J2 LTR MaLR 321 447 -3 781 187 82 18 chr13 101580514 101580685 -18164213 + MER5A DNA MER1_type 1 182 -7 456 294 44 19 chr13 101581063 101581223 -18163675 + MLT1J2 LTR MaLR 250 413 -37 254 258 100 17 chr13 101581250 101581370 -18163528 - L1P LINE L1 -1132 5014 4885 2681 233 57 44 chr13 101581648 101583348 -18161550 + L1ME1 LINE L1 4443 6153 -13 951 226 167 0 chr13 101583406 101583693 -18161205 - MER58B DNA MER1_type -4 337 3 619 295 48 9 chr13 101583708 101584023 -18160875 - L1ME LINE L1 -2023 4106 3780 235 263 40 26 chr13 101584513 101584665 -18160233 - L1ME LINE L1 -3959 2170 2017 219 114 0 0 chr13 101584665 101584700 -18160198 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 3563 146 57 2 chr13 101585116 101585726 -18159172 + LTR9B LTR ERV1 1 644 0 2129 188 70 16 chr13 101585726 101586215 -18158683 + HUERS-P3 LTR ERV1 1 515 -8404 6420 171 55 18 chr13 101586339 101587600 -18157298 + HUERS-P3 LTR ERV1 743 2050 -6869 * 10129 145 28 22 chr13 101587596 101589339 -18155559 + HUERS-P3 LTR ERV1 7164 8915 -4 3931 137 40 0 chr13 101589342 101589961 -18154937 + LTR9B LTR ERV1 1 644 0 1276 219 33 61 chr13 101590067 101590459 -18154439 - MER50 LTR ERV1 0 734 354 716 169 25 31 chr13 101590540 101590700 -18154198 - MER50 LTR ERV1 -566 168 10 781 282 73 64 chr13 101590753 101591004 -18153894 - L1MEd LINE L1 -4642 1668 1421 2279 109 11 14 chr13 101591004 101591351 -18153547 + L1PA8 LINE L1 5823 6168 -4 781 282 73 64 chr13 101591351 101592307 -18152591 - L1MEd LINE L1 -4889 1421 427 497 234 81 0 chr13 101592470 101592594 -18152304 + MER94 DNA DNA 1 134 0 351 295 32 74 chr13 101592673 101592863 -18152035 - L1MEd LINE L1 -5935 184 3 232 305 0 0 chr13 101593891 101593950 -18150948 + L2 LINE L2 3201 3259 -13 22 35 0 0 chr13 101594041 101594070 -18150828 + AT_rich Low_complexity Low_complexity 1 29 0 442 226 132 63 chr13 101594591 101594909 -18149989 - HAL1 LINE L1 -1439 1068 729 222 244 0 0 chr13 101594952 101594997 -18149901 + MIR SINE MIR 2 46 -216 367 364 65 20 chr13 101595194 101595546 -18149352 - HAL1 LINE L1 -1994 513 146 2606 182 178 45 chr13 101595557 101596286 -18148612 - LTR1B LTR ERV1 0 826 1 249 328 0 59 chr13 101596558 101596677 -18148221 + L1MEc LINE L1 195 306 -6090 1408 301 61 28 chr13 101597261 101597330 -18147568 + L1MEc LINE L1 831 896 -5500 2366 214 18 22 chr13 101597330 101597835 -18147063 + MLT1D LTR MaLR 1 503 -2 1408 301 61 28 chr13 101597835 101597956 -18146942 + L1MEc LINE L1 896 1011 -5385 6809 68 1 10 chr13 101597956 101599152 -18145746 + L1PA7 LINE L1 4964 6153 -1 1408 301 61 28 chr13 101599152 101600086 -18144812 + L1MEc LINE L1 1011 1994 -4402 444 270 64 27 chr13 101600230 101600526 -18144372 + L1MEc LINE L1 2040 2346 -4050 208 197 14 14 chr13 101600539 101600610 -18144288 + (TA)n Simple_repeat Simple_repeat 1 71 0 319 303 15 52 chr13 101600795 101601201 -18143697 + L1MEc LINE L1 791 1181 -5215 334 176 22 7 chr13 101602071 101602199 -18142699 + GA-rich Low_complexity Low_complexity 1 129 0 769 260 94 40 chr13 101602210 101602690 -18142208 + L1MC5 LINE L1 7311 7816 -145 2355 67 7 0 chr13 101603557 101603856 -18141042 - AluY SINE Alu -10 301 1 305 324 134 17 chr13 101605101 101605280 -18139618 + MIR3 SINE MIR 5 204 -4 264 298 97 24 chr13 101606997 101607121 -18137777 - MIR SINE MIR -110 152 20 278 368 26 0 chr13 101607385 101607499 -18137399 + MIR SINE MIR 4 120 -142 286 345 69 9 chr13 101607657 101607773 -18137125 - L2 LINE L2 -17 3255 3133 786 254 33 5 chr13 101608235 101608448 -18136450 - MIR SINE MIR -21 241 23 836 179 45 34 chr13 101608652 101608831 -18136067 + MER2 DNA MER2_type 2 182 -163 198 232 0 87 chr13 101609265 101609334 -18135564 + L2 LINE L2 3209 3271 -1 1965 139 7 17 chr13 101609423 101609724 -18135174 + AluSx SINE Alu 1 298 -14 5079 91 15 19 chr13 101610402 101611152 -18133746 + L1MA1 LINE L1 5554 6300 -2 1932 104 10 17 chr13 101611993 101612282 -18132616 - AluSx SINE Alu -25 287 1 339 54 71 0 chr13 101613455 101613511 -18131387 - Alu SINE Alu -1 299 240 206 331 150 0 chr13 101614180 101614307 -18130591 - L2 LINE L2 -4 3309 3164 3212 162 22 14 chr13 101614524 101615146 -18129752 + L1MB3 LINE L1 5550 6176 -7 191 313 50 12 chr13 101615161 101615241 -18129657 - MIR3 SINE MIR -39 169 87 184 282 174 20 chr13 101616475 101616624 -18128274 + MIR3 SINE MIR 2 173 -35 1730 146 6 62 chr13 101617666 101617987 -18126911 + AluJo SINE Alu 1 303 -9 296 281 53 26 chr13 101618000 101618114 -18126784 - L2 LINE L2 -1389 1925 1809 587 136 0 0 chr13 101618299 101618387 -18126511 - AluS SINE Alu -224 88 1 195 304 18 0 chr13 101618389 101618445 -18126453 - MER5B DNA MER1_type -115 63 7 180 302 0 0 chr13 101618461 101618514 -18126384 - MER5B DNA MER1_type -3 175 123 995 221 38 36 chr13 101618514 101618842 -18126056 + L1ME2 LINE L1 5837 6164 0 275 302 0 86 chr13 101618844 101618960 -18125938 - MER5B DNA MER1_type -72 106 1 413 310 32 37 chr13 101619060 101619247 -18125651 + MER5A DNA MER1_type 4 189 0 939 195 30 35 chr13 101619946 101620177 -18124721 + MLT1E LTR MaLR 336 565 -28 25 0 0 0 chr13 101620425 101620450 -18124448 + AT_rich Low_complexity Low_complexity 1 25 0 4158 218 60 11 chr13 101622626 101623618 -18121280 - MER45B DNA AcHobo 0 1040 1 258 32 0 0 chr13 101624204 101624235 -18120663 + (CA)n Simple_repeat Simple_repeat 2 32 0 222 286 134 25 chr13 101625112 101625231 -18119667 + MIR SINE MIR 53 184 -78 446 255 92 33 chr13 101625487 101625640 -18119258 - MIR SINE MIR -93 169 8 785 125 0 8 chr13 101626207 101626327 -18118571 - MLT1A1 LTR MaLR -51 314 196 27 0 0 0 chr13 101626330 101626357 -18118541 + AT_rich Low_complexity Low_complexity 1 27 0 641 87 0 0 chr13 101626357 101626449 -18118449 - L1PA6 LINE L1 -4 6150 6059 2162 134 0 0 chr13 101626475 101626781 -18118117 - AluSx SINE Alu -6 306 1 252 234 138 53 chr13 101627477 101627571 -18117327 + L2 LINE L2 3179 3280 -33 1745 172 3 3 chr13 101627662 101627976 -18116922 + L1PB4 LINE L1 5842 6155 -1 366 233 35 17 chr13 101628753 101628869 -18116029 - MIR SINE MIR -70 192 75 1589 197 32 62 chr13 101629008 101629474 -18115424 - MLT1C LTR MaLR -10 457 6 293 256 116 0 chr13 101629735 101629864 -18115034 + LTR50 LTR ERVL 614 757 -38 21 57 0 0 chr13 101629944 101629979 -18114919 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr13 101630078 101630114 -18114784 + AT_rich Low_complexity Low_complexity 1 36 0 830 277 51 30 chr13 101630427 101630759 -18114139 + MLT1I LTR MaLR 3 341 -68 2107 110 24 0 chr13 101630842 101631134 -18113764 - AluSq SINE Alu -14 299 1 1413 314 107 14 chr13 101631150 101631841 -18113057 + L2 LINE L2 2000 2754 -560 565 319 94 47 chr13 101632551 101632989 -18111909 + L2 LINE L2 2762 3234 -79 2632 100 17 6 chr13 101632989 101633349 -18111549 + THE1B LTR MaLR 1 364 0 565 319 94 47 chr13 101633349 101633433 -18111465 + L2 LINE L2 3234 3313 0 345 296 162 18 chr13 101634114 101634325 -18110573 - L1 LINE L1 -2559 3587 3323 195 42 0 0 chr13 101634325 101634349 -18110549 + (CA)n Simple_repeat Simple_repeat 1 24 0 345 296 162 18 chr13 101634349 101634421 -18110477 - L1 LINE L1 -2823 3323 3263 2318 57 0 14 chr13 101635283 101635601 -18109297 + AluY SINE Alu 1 311 0 207 0 0 0 chr13 101635636 101635659 -18109239 + (A)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr13 101635659 101635680 -18109218 + (CA)n Simple_repeat Simple_repeat 2 22 0 240 143 29 29 chr13 101636249 101636319 -18108579 + (TAA)n Simple_repeat Simple_repeat 1 70 0 991 248 29 21 chr13 101636351 101636589 -18108309 - MIR SINE MIR -20 242 3 273 290 28 28 chr13 101638268 101638375 -18106523 + L2 LINE L2 2247 2353 -961 309 229 0 12 chr13 101638431 101638514 -18106384 + MER53 DNA DNA 107 188 -1 206 379 64 41 chr13 101638757 101638868 -18106030 + L2 LINE L2 2645 2752 -562 469 268 18 0 chr13 101638868 101638980 -18105918 - MER81 DNA DNA 0 114 1 206 379 64 41 chr13 101638980 101639182 -18105716 + L2 LINE L2 2752 2965 -349 326 335 67 58 chr13 101639247 101639560 -18105338 + L2 LINE L2 2991 3306 -7 233 384 106 12 chr13 101639653 101639973 -18104925 + L2 LINE L2 2356 2705 -609 351 292 105 0 chr13 101640472 101640643 -18104255 + L1M4c LINE L1 1942 2130 -4254 1635 112 62 8 chr13 101640802 101641060 -18103838 - AluSp SINE Alu -41 272 1 2046 188 89 0 chr13 101641812 101642265 -18102633 + MLT1D LTR MaLR 1 617 -7 7040 156 19 67 chr13 101642266 101643316 -18101582 + L1P LINE L1 3337 4436 -1710 291 71 0 0 chr13 101643316 101643358 -18101540 + (CA)n Simple_repeat Simple_repeat 2 43 0 7040 156 19 67 chr13 101643358 101643603 -18101295 + L1P LINE L1 4436 4545 -1601 1698 143 64 0 chr13 101643603 101643869 -18101029 + AluSx SINE Alu 3 285 -27 7040 156 19 67 chr13 101643869 101644154 -18100744 + L1P LINE L1 4545 4842 -1304 413 313 54 10 chr13 101644253 101644550 -18100348 + L1ME4a LINE L1 5556 5865 -256 334 270 65 43 chr13 101644760 101644945 -18099953 - MLT1I LTR MaLR -208 201 13 351 214 45 0 chr13 101645112 101645201 -18099697 + L1ME4a LINE L1 6010 6102 -19 1760 258 36 45 chr13 101645402 101646068 -18098830 + MLT1-int LTR MaLR 1 660 -711 276 205 13 39 chr13 101646117 101646195 -18098703 + MLT1-int LTR MaLR 657 732 -639 1550 234 87 41 chr13 101646197 101646886 -18098012 - L1M4 LINE L1 -2168 3978 3258 2624 45 3 0 chr13 101646936 101647246 -18097652 - AluY SINE Alu 0 311 1 1819 143 7 7 chr13 101648180 101648460 -18096438 - AluSg SINE Alu -30 280 1 2358 126 81 2 chr13 101648631 101649027 -18095871 - MSTA LTR MaLR 0 428 2 22 0 0 0 chr13 101649301 101649323 -18095575 + AT_rich Low_complexity Low_complexity 1 22 0 2844 13 0 0 chr13 101650237 101650570 -18094328 + AluYa5 SINE Alu 1 333 0 25 51 0 0 chr13 101650956 101650995 -18093903 + AT_rich Low_complexity Low_complexity 1 39 0 1356 121 13 25 chr13 101651208 101651383 -18093515 + L1MA3 LINE L1 6060 6233 -72 1808 147 82 25 chr13 101651383 101651738 -18093160 + THE1C LTR MaLR 1 375 0 1356 121 13 25 chr13 101651738 101651801 -18093097 + L1MA3 LINE L1 6233 6295 -10 261 271 223 31 chr13 101651910 101652139 -18092759 + L2 LINE L2 2286 2558 -756 410 250 0 0 chr13 101652618 101652719 -18092179 + L1M1 LINE L1 816 1259 -6306 238 340 113 9 chr13 101652719 101652825 -18092073 - L2 LINE L2 -6 3307 3191 7668 198 76 52 chr13 101652867 101654993 -18089905 + L1M1 LINE L1 23 2097 -5468 1664 173 3 61 chr13 101654993 101655323 -18089575 + AluJb SINE Alu 2 312 0 7668 198 76 52 chr13 101655323 101655627 -18089271 + L1M1 LINE L1 2097 2392 -5173 2323 95 0 0 chr13 101655627 101655922 -18088976 + AluSx SINE Alu 1 295 -17 7668 198 76 52 chr13 101655922 101656607 -18088291 + L1M1 LINE L1 2392 3943 -3622 2387 73 0 25 chr13 101656675 101656992 -18087906 - AluY SINE Alu 0 311 3 1894 182 3 6 chr13 101657154 101657467 -18087431 + AluJo SINE Alu 1 312 0 234 243 87 0 chr13 101657520 101657623 -18087275 + HAL1 LINE L1 2094 2205 -302 261 43 106 0 chr13 101657643 101657690 -18087208 + L1MA3 LINE L1 6251 6302 -3 282 280 105 10 chr13 101657749 101657949 -18086949 + HAL1 LINE L1 2286 2504 -3 23 97 0 0 chr13 101658312 101658384 -18086514 + AT_rich Low_complexity Low_complexity 1 72 0 2193 79 0 0 chr13 101658634 101658924 -18085974 - L1PA7 LINE L1 -2 6152 5863 223 182 23 0 chr13 101659019 101659063 -18085835 + CT-rich Low_complexity Low_complexity 3 47 0 1000 102 13 0 chr13 101659856 101660013 -18084885 - L1MA5 LINE L1 -1 6299 6141 284 100 40 0 chr13 101660013 101660063 -18084835 + L1MA5 LINE L1 6063 6114 -186 26 50 0 0 chr13 101660227 101660267 -18084631 + AT_rich Low_complexity Low_complexity 1 40 0 2318 85 0 0 chr13 101660351 101660657 -18084241 - AluSc SINE Alu 0 306 1 1560 235 3 14 chr13 101660736 101660825 -18084073 + MLT1A1 LTR MaLR 12 100 -265 3972 127 48 0 chr13 101660825 101661409 -18083489 - LTR9 LTR ERV1 0 612 1 1560 235 3 14 chr13 101661409 101661677 -18083221 + MLT1A1 LTR MaLR 100 365 0 229 367 20 0 chr13 101661684 101661782 -18083116 - L2 LINE L2 -15 3298 3199 313 298 66 8 chr13 101662848 101662969 -18081929 - L1ME4a LINE L1 -28 6093 5966 336 276 51 108 chr13 101663005 101663338 -18081560 - L1ME2 LINE L1 -137 6027 5714 250 261 72 14 chr13 101663393 101663462 -18081436 + MER5C DNA MER1_type 4 76 -248 340 352 30 35 chr13 101663565 101663764 -18081134 - L1ME2 LINE L1 -472 5698 5501 4350 187 25 11 chr13 101663790 101663896 -18081002 - L1MB8 LINE L1 -7 6171 6068 2194 122 0 0 chr13 101663896 101664192 -18080706 - AluSx SINE Alu -15 297 2 4350 187 25 11 chr13 101664192 101665053 -18079845 - L1MB8 LINE L1 -110 6068 5188 21 0 0 0 chr13 101665114 101665135 -18079763 + AT_rich Low_complexity Low_complexity 1 21 0 219 267 0 0 chr13 101665149 101665235 -18079663 + (TA)n Simple_repeat Simple_repeat 1 86 0 780 202 128 7 chr13 101665247 101665529 -18079369 - L1MB8 LINE L1 -2364 3782 3467 710 344 76 18 chr13 101665513 101666251 -18078647 - L1MEc LINE L1 -5581 815 35 * 2339 103 0 13 chr13 101666502 101666840 -18078058 + AluSx SINE Alu 1 334 0 242 220 11 66 chr13 101666863 101666954 -18077944 - MER97b DNA MER1_type? -14 1039 954 319 200 0 12 chr13 101666961 101667046 -18077852 - MER97a DNA MER1_type? -208 686 603 4736 128 8 65 chr13 101667048 101667980 -18076918 - L1PB4 LINE L1 -7 6149 5272 * 38142 47 11 1 chr13 101667978 101673773 -18071125 - L1PA5 LINE L1 0 6469 612 336 104 0 0 chr13 101673758 101673806 -18071092 - L1PA5 LINE L1 -6365 96 49 * 1173 223 29 3 chr13 101673812 101674158 -18070740 - L1PB4 LINE L1 -864 5282 4928 1602 249 72 40 chr13 101674158 101674385 -18070513 - MER97b DNA MER1_type? -448 605 387 1766 137 8 0 chr13 101674385 101674647 -18070251 + AluSq SINE Alu 49 312 -1 1602 249 72 40 chr13 101674647 101674753 -18070145 - MER97b DNA MER1_type? -666 387 286 1497 184 33 3 chr13 101674753 101675058 -18069840 + L1MA7 LINE L1 5968 6281 -10 1602 249 72 40 chr13 101675058 101675306 -18069592 - MER97b DNA MER1_type? -767 286 4 32 0 0 0 chr13 101675842 101675874 -18069024 + AT_rich Low_complexity Low_complexity 1 32 0 315 216 45 54 chr13 101675883 101675994 -18068904 - HAL1b LINE L1 -7 1341 1232 414 232 77 18 chr13 101675995 101676163 -18068735 - HAL1b LINE L1 -193 1155 978 529 157 29 10 chr13 101676174 101676276 -18068622 + U13 snRNA snRNA 1 104 0 847 279 102 33 chr13 101676429 101676635 -18068263 - HAL1b LINE L1 -582 766 576 628 245 22 54 chr13 101676635 101676819 -18068079 + MER45A DNA AcHobo 1 178 0 847 279 102 33 chr13 101676819 101677103 -18067795 - HAL1b LINE L1 -772 576 242 220 267 244 0 chr13 101677277 101677367 -18067531 + L2 LINE L2 1693 1804 -1510 350 297 51 29 chr13 101677370 101677545 -18067353 + LTR33A LTR ERVL 342 520 -3 21 0 0 0 chr13 101677720 101677741 -18067157 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr13 101678078 101678111 -18066787 + (TG)n Simple_repeat Simple_repeat 2 34 0 46 33 0 0 chr13 101678526 101678586 -18066312 + AT_rich Low_complexity Low_complexity 1 60 0 322 287 113 67 chr13 101678748 101678932 -18065966 - L1MC4a LINE L1 -1896 5912 5738 2678 126 7 7 chr13 101678932 101679378 -18065520 + L1MA5A LINE L1 5852 6297 0 322 287 113 67 chr13 101679378 101679670 -18065228 - L1MC4a LINE L1 -2070 5738 5414 1616 329 71 48 chr13 101679825 101680553 -18064345 - L2 LINE L2 0 3313 2603 2332 88 0 7 chr13 101680553 101680849 -18064049 - AluY SINE Alu -17 294 1 1616 329 71 48 chr13 101680849 101680985 -18063913 - L2 LINE L2 -710 2603 2472 1999 145 86 22 chr13 101680985 101681391 -18063507 - MSTB1 LTR MaLR 0 432 1 1616 329 71 48 chr13 101681391 101681841 -18063057 - L2 LINE L2 -841 2472 1967 23 68 0 0 chr13 101681900 101681944 -18062954 + AT_rich Low_complexity Low_complexity 1 44 0 251 272 82 43 chr13 101682010 101682242 -18062656 - L1MC4a LINE L1 -1095 5051 4811 285 206 0 29 chr13 101682288 101682356 -18062542 - MLT1K LTR MaLR -344 244 179 2733 218 36 14 chr13 101683061 101683699 -18061199 - MER82 DNA MER2_type -1 652 1 567 301 6 6 chr13 101685371 101685534 -18059364 + MIR SINE MIR 48 210 -52 538 280 23 46 chr13 101685557 101685818 -18059080 - MER112 DNA MER1_type 0 256 2 1003 273 195 64 chr13 101688429 101688561 -18056337 + L2 LINE L2 2 115 -3199 1731 159 13 33 chr13 101688561 101688862 -18056036 + AluJo SINE Alu 1 295 -17 1003 273 195 64 chr13 101688862 101689831 -18055067 + L2 LINE L2 115 1247 -2067 922 282 96 11 chr13 101689831 101690397 -18054501 - L1MB7 LINE L1 -288 5896 5254 1818 174 0 0 chr13 101690416 101690727 -18054171 - MER7A DNA MER2_type 0 346 38 258 274 164 25 chr13 101690736 101690937 -18053961 - L1MB7 LINE L1 -913 5233 5005 192 77 0 0 chr13 101691590 101691616 -18053282 + (TATATG)n Simple_repeat Simple_repeat 5 30 0 226 259 0 25 chr13 101691896 101691977 -18052921 - L1MC4 LINE L1 -1311 6731 6653 21 0 0 0 chr13 101692678 101692699 -18052199 + AT_rich Low_complexity Low_complexity 1 21 0 875 284 42 36 chr13 101692884 101693419 -18051479 - L1MCa LINE L1 -4594 1877 1135 281 281 46 37 chr13 101693438 101693655 -18051243 - L1MEd LINE L1 -4931 1188 970 1973 105 28 74 chr13 101694544 101694868 -18050030 + AluSx SINE Alu 1 309 -3 309 302 42 91 chr13 101695092 101695400 -18049498 - HAL1 LINE L1 -1270 1237 945 195 42 0 0 chr13 101695652 101695676 -18049222 + (TC)n Simple_repeat Simple_repeat 1 24 0 2285 55 58 3 chr13 101696696 101696988 -18047910 + AluY SINE Alu 2 309 -2 418 286 214 11 chr13 101697630 101697808 -18047090 - MIR SINE MIR 0 262 49 2199 126 52 10 chr13 101697835 101698241 -18046657 - MSTA LTR MaLR 0 428 6 303 196 0 168 chr13 101698702 101698766 -18046132 - MER63D DNA MER1_type -1 1061 988 2295 123 37 0 chr13 101698766 101699148 -18045750 + L1MA4 LINE L1 5905 6300 0 1306 99 6 0 chr13 101699152 101699362 -18045536 + L1PA8 LINE L1 5983 6172 0 303 196 0 168 chr13 101699362 101699399 -18045499 - MER63D DNA MER1_type -77 985 973 320 128 0 0 chr13 101699399 101699470 -18045428 - Alu SINE Alu 0 304 234 2201 207 46 53 chr13 101699474 101699793 -18045105 - MER63D DNA MER1_type -80 981 661 883 274 18 0 chr13 101699793 101700012 -18044886 + MER58A DNA MER1_type 1 223 -1 2201 207 46 53 chr13 101700012 101700369 -18044529 - MER63D DNA MER1_type -400 661 310 1044 176 34 8 chr13 101700371 101700609 -18044289 - MER63D DNA MER1_type -684 246 3 519 302 149 14 chr13 101700919 101701287 -18043611 - MLT1J2 LTR MaLR -31 419 2 616 258 48 18 chr13 101702741 101702908 -18041990 + L1ME1 LINE L1 5978 6149 -17 1483 159 80 3 chr13 101703027 101703328 -18041570 + MER33 DNA MER1_type 1 324 0 1096 198 13 53 chr13 101703561 101703788 -18041110 + MER20 DNA MER1_type 1 218 -1 687 280 111 28 chr13 101705188 101705549 -18039349 - MARNA DNA Mariner -26 560 170 1447 296 33 4 chr13 101705554 101706014 -18038884 + L1ME1 LINE L1 12 484 -5939 534 253 41 6 chr13 101706090 101706260 -18038638 + L1ME1 LINE L1 2494 2669 -4453 1024 229 24 4 chr13 101706281 101706534 -18038364 + L1ME1 LINE L1 3598 3855 -3086 1138 197 38 45 chr13 101706537 101706801 -18038097 - MER58B DNA MER1_type 0 341 80 2651 234 69 51 chr13 101706812 101707552 -18037346 + L1ME1 LINE L1 5374 6099 -862 1762 160 19 22 chr13 101707552 101707864 -18037034 + AluJb SINE Alu 1 311 -1 2651 234 69 51 chr13 101707864 101708005 -18036893 + L1ME1 LINE L1 6099 6236 -725 1800 134 36 4 chr13 101708005 101708300 -18036598 + AluSx SINE Alu 1 304 0 2651 234 69 51 chr13 101708300 101708977 -18035921 + L1ME1 LINE L1 6236 6956 -5 2109 139 0 0 chr13 101709092 101709386 -18035512 + AluSx SINE Alu 1 294 -18 261 163 0 0 chr13 101709907 101709956 -18034942 + (TG)n Simple_repeat Simple_repeat 2 50 0 206 247 25 86 chr13 101710343 101710424 -18034474 - MER5A DNA MER1_type -47 142 67 1098 133 37 0 chr13 101710598 101710786 -18034112 + L1MA4 LINE L1 5858 6052 -248 289 217 0 0 chr13 101710965 101711030 -18033868 - L1M4 LINE L1 -366 5808 5741 234 206 27 14 chr13 101711027 101711100 -18033798 - L1M4 LINE L1 -832 5330 5257 * 1450 125 28 0 chr13 101711136 101711381 -18033517 + L1MA4 LINE L1 6040 6299 -1 222 279 74 49 chr13 101711760 101711882 -18033016 - MER5A DNA MER1_type -16 173 49 * 302 296 61 35 chr13 101711775 101711890 -18033008 + MER5A DNA MER1_type 44 161 -28 1678 171 27 17 chr13 101711901 101712193 -18032705 - AluJo SINE Alu -6 306 12 1021 206 48 0 chr13 101712945 101713154 -18031744 - MER20 DNA MER1_type 0 219 1 1849 141 30 16 chr13 101713786 101714091 -18030807 + AluSx SINE Alu 4 312 0 854 262 128 29 chr13 101714390 101714835 -18030063 - L1ME3 LINE L1 -205 5957 5421 2417 121 40 0 chr13 101714835 101715183 -18029715 + THE1B LTR MaLR 3 364 0 854 262 128 29 chr13 101715183 101715332 -18029566 - L1ME3 LINE L1 -741 5421 5288 306 0 0 0 chr13 101715402 101715436 -18029462 + (TG)n Simple_repeat Simple_repeat 2 35 0 587 286 26 56 chr13 101715509 101715778 -18029120 - MLT1J LTR MaLR -248 263 3 338 263 206 32 chr13 101715900 101716333 -18028565 - L1ME3 LINE L1 -1330 4816 4309 1672 68 0 0 chr13 101716351 101716556 -18028342 - L1PA14 LINE L1 0 6161 5957 9503 55 7 0 chr13 101716901 101718788 -18026110 - L1PA6 LINE L1 -16 6138 4243 3011 193 15 20 chr13 101720730 101721343 -18023555 - L1MB8 LINE L1 -43 6135 5526 269 279 0 0 chr13 101721344 101721405 -18023493 + L2 LINE L2 3244 3304 -9 249 33 0 0 chr13 101721713 101721743 -18023155 + (TC)n Simple_repeat Simple_repeat 1 30 0 2129 198 76 0 chr13 101721794 101722189 -18022709 - MSTB LTR MaLR 0 426 2 2628 109 34 14 chr13 101722367 101722724 -18022174 + THE1B LTR MaLR 1 364 0 2875 217 44 39 chr13 101723009 101723720 -18021178 - MER21B LTR ERV1 -52 811 98 354 242 0 0 chr13 101723770 101723836 -18021062 - MER21B LTR ERV1 -773 90 25 345 47 0 0 chr13 101723839 101723882 -18021016 + (TA)n Simple_repeat Simple_repeat 1 43 0 270 0 0 0 chr13 101723882 101723912 -18020986 + (T)n Simple_repeat Simple_repeat 1 30 0 538 257 7 20 chr13 101724188 101724336 -18020562 + L2 LINE L2 3167 3312 -1 2139 156 35 24 chr13 101724586 101724957 -18019941 - THE1C LTR MaLR 0 375 1 185 147 0 0 chr13 101725211 101725245 -18019653 - L2 LINE L2 0 3272 3239 227 200 0 13 chr13 101725639 101725714 -18019184 + (TAG)n Simple_repeat Simple_repeat 1 74 0 3418 104 23 0 chr13 101725755 101726198 -18018700 - MLT2A2 LTR ERVL 0 453 1 2335 109 0 0 chr13 101726447 101726751 -18018147 + AluSq SINE Alu 1 304 -9 294 373 7 7 chr13 101728351 101728501 -18016397 - MIR3 SINE MIR -15 193 44 249 384 16 22 chr13 101728482 101728667 -18016231 + MIR SINE MIR 16 199 -63 * 183 293 0 0 chr13 101729184 101729242 -18015656 - MIR SINE MIR -109 153 96 204 175 79 63 chr13 101729548 101729611 -18015287 + MER5A DNA MER1_type 119 182 -7 * 326 397 0 7 chr13 101729607 101729753 -18015145 + L3 LINE CR1 1215 1359 -218 563 128 0 35 chr13 101730271 101730357 -18014541 - FRAM SINE Alu -31 145 63 1586 115 55 0 chr13 101730441 101730659 -18014239 + MER30 DNA MER1_type 1 230 0 207 244 0 0 chr13 101731566 101731607 -18013291 + C-rich Low_complexity Low_complexity 4 44 0 243 61 0 0 chr13 101731732 101731765 -18013133 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 347 325 16 8 chr13 101731952 101732075 -18012823 + MIR SINE MIR 17 140 -68 565 224 13 0 chr13 101732151 101732307 -18012591 + CT-rich Low_complexity Low_complexity 2 159 0 321 150 0 190 chr13 101734523 101734623 -18010275 + MER63A DNA MER1_type 1 81 0 2229 107 10 0 chr13 101734626 101735048 -18009850 - AluSp SINE Alu 0 425 1 634 280 0 0 chr13 101735049 101735192 -18009706 + MER63A DNA MER1_type 68 210 0 191 305 55 94 chr13 101736974 101737102 -18007796 + L2 LINE L2 2607 2729 -585 26 30 0 0 chr13 101737682 101737715 -18007183 + AT_rich Low_complexity Low_complexity 1 33 0 287 286 11 33 chr13 101737793 101737884 -18007014 + LTR33A LTR ERVL 435 523 0 910 176 7 14 chr13 101740509 101740680 -18004218 + FRAM SINE Alu 1 170 0 343 325 74 26 chr13 101740852 101741083 -18003815 + MIR SINE MIR 11 252 -10 248 206 143 0 chr13 101741838 101741901 -18002997 - MIR3 SINE MIR 0 208 137 1062 168 56 0 chr13 101742091 101742270 -18002628 - MER5A DNA MER1_type 0 189 1 500 290 7 14 chr13 101742286 101742431 -18002467 + MER5B DNA MER1_type 4 147 -31 407 241 0 0 chr13 101742495 101742578 -18002320 - MER5A DNA MER1_type -89 100 18 2079 129 10 10 chr13 101742757 101743067 -18001831 + AluSx SINE Alu 1 310 -2 350 339 69 0 chr13 101745407 101745537 -17999361 + MIR SINE MIR 20 158 -104 502 225 168 12 chr13 101745743 101745916 -17998982 - MLT1J1 LTR MaLR 0 446 247 4819 122 30 12 chr13 101745969 101746709 -17998189 - MER4D LTR ERV1 -2 901 149 198 224 0 0 chr13 101746822 101746871 -17998027 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 1292 291 36 59 chr13 101747818 101748484 -17996414 + MLT2F LTR ERVL 12 662 -1 267 278 71 48 chr13 101748496 101748622 -17996276 - MIR SINE MIR -128 134 6 606 295 11 0 chr13 101748787 101748970 -17995928 - L2 LINE L2 0 3313 3129 32005 38 12 1 chr13 101749070 101753591 -17991307 - L1PA3 LINE L1 -141 6014 1439 222 118 0 0 chr13 101754038 101754072 -17990826 + (CA)n Simple_repeat Simple_repeat 2 35 0 350 238 149 42 chr13 101754467 101754635 -17990263 + MER5A DNA MER1_type 4 189 0 1983 142 158 11 chr13 101755515 101755888 -17989010 - MSTA LTR MaLR 0 428 1 640 173 73 62 chr13 101757367 101757546 -17987352 + MLT1C LTR MaLR 134 314 -153 2005 146 0 16 chr13 101757593 101757908 -17986990 - AluJb SINE Alu 0 312 3 233 214 107 48 chr13 101757988 101758072 -17986826 + L2 LINE L2 3225 3313 0 407 141 19 0 chr13 101758512 101758591 -17986307 + AluS SINE Alu 1 67 -236 270 0 0 0 chr13 101759372 101759402 -17985496 + (A)n Simple_repeat Simple_repeat 1 30 0 2463 43 7 7 chr13 101759404 101759704 -17985194 + AluY SINE Alu 1 300 -11 692 195 16 0 chr13 101760844 101760972 -17983926 - FLAM_C SINE Alu -3 130 1 321 342 0 0 chr13 101761278 101761392 -17983506 + (TA)n Simple_repeat Simple_repeat 2 115 0 184 239 34 0 chr13 101761397 101761485 -17983413 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 2216 118 21 12 chr13 101762691 101763031 -17981867 + MER61A LTR ERV1 1 343 0 371 265 181 12 chr13 101764982 101765148 -17979750 + MIR SINE MIR 16 209 -53 321 346 52 0 chr13 101765148 101765284 -17979614 - L2 LINE L2 -622 2692 2550 717 318 47 45 chr13 101765390 101765877 -17979021 + L2 LINE L2 2826 3313 0 3153 153 2 17 chr13 101766010 101766533 -17978365 + MER41B LTR ERV1 1 515 -120 205 323 120 15 chr13 101766865 101766998 -17977900 + L2 LINE L2 3122 3268 -4 456 293 61 22 chr13 101767892 101768073 -17976825 - LTR33 LTR ERVL -21 500 313 588 130 0 137 chr13 101768933 101769079 -17975819 - MER4D LTR ERV1 -728 144 19 3226 166 57 13 chr13 101769289 101769885 -17975013 + LTR26E LTR ERV1 1 622 0 320 311 37 62 chr13 101770039 101770200 -17974698 - MIR3 SINE MIR -21 187 31 318 309 29 37 chr13 101772019 101772155 -17972743 - L2 LINE L2 0 3313 3179 336 102 0 0 chr13 101772558 101772607 -17972291 + (TC)n Simple_repeat Simple_repeat 2 50 0 267 273 11 0 chr13 101772681 101772769 -17972129 + MIR SINE MIR 52 140 -122 352 260 71 39 chr13 101772894 101773021 -17971877 - MIR3 SINE MIR -9 199 69 1525 288 53 12 chr13 101773166 101773733 -17971165 - MLT1E LTR MaLR 0 593 4 309 279 0 0 chr13 101773964 101774093 -17970805 + (TG)n Simple_repeat Simple_repeat 2 130 0 1996 138 0 45 chr13 101774961 101775272 -17969626 + AluSx SINE Alu 1 297 -15 407 293 181 5 chr13 101775342 101775547 -17969351 + MIR SINE MIR 10 250 -12 239 302 86 9 chr13 101775592 101775708 -17969190 - L2 LINE L2 -1 3312 3188 1676 147 50 66 chr13 101777004 101777385 -17967513 - THE1C LTR MaLR 0 375 1 364 335 60 20 chr13 101777556 101777804 -17967094 - MIR SINE MIR 0 262 5 1779 160 58 50 chr13 101777909 101778224 -17966674 - MLT1A1 LTR MaLR 0 365 45 2242 126 0 0 chr13 101778224 101778525 -17966373 - AluSx SINE Alu -11 301 1 1779 160 58 50 chr13 101778525 101778571 -17966327 - MLT1A1 LTR MaLR -320 45 1 1017 176 136 0 chr13 101778910 101779109 -17965789 - LTR8A LTR ERV1 -501 226 1 208 342 105 13 chr13 101779116 101779192 -17965706 - MIR SINE MIR -156 106 24 475 287 130 14 chr13 101779266 101779489 -17965409 - MIR SINE MIR -12 250 2 2007 112 84 35 chr13 101779812 101780159 -17964739 + THE1B LTR MaLR 1 364 0 211 293 86 61 chr13 101781653 101781851 -17963047 + L2 LINE L2 2882 3084 -188 858 283 77 69 chr13 101782277 101782898 -17962000 + HAL1 LINE L1 24 649 -1858 1274 243 92 21 chr13 101782993 101783330 -17961568 + LTR16B LTR ERVL 101 461 -3 1088 338 54 22 chr13 101783334 101783911 -17960987 + HERV16 LTR ERVL 3 597 -4399 1066 279 77 20 chr13 101784033 101784423 -17960475 + HERV16 LTR ERVL 742 1153 -3843 784 256 102 38 chr13 101784804 101784994 -17959904 + HAL1 LINE L1 798 974 -1533 2000 152 0 10 chr13 101784994 101785304 -17959594 + AluSx SINE Alu 1 307 -5 784 256 102 38 chr13 101785304 101785613 -17959285 + HAL1 LINE L1 974 1329 -1178 580 342 72 16 chr13 101786469 101786843 -17958055 + L2 LINE L2 2917 3311 -2 801 95 0 0 chr13 101786847 101786963 -17957935 + (TGGA)n Simple_repeat Simple_repeat 1 116 0 871 131 46 8 chr13 101787773 101787903 -17956995 + AluSx SINE Alu 1 135 -177 1767 119 16 4 chr13 101787903 101788156 -17956742 + AluSc SINE Alu 35 290 -19 31 26 0 0 chr13 101788156 101788194 -17956704 + AT_rich Low_complexity Low_complexity 1 38 0 797 164 7 34 chr13 101788194 101788340 -17956558 + AluSx SINE Alu 117 258 -54 198 0 0 0 chr13 101788474 101788496 -17956402 + (TC)n Simple_repeat Simple_repeat 1 22 0 1000 184 46 34 chr13 101788507 101788746 -17956152 - MLT1D LTR MaLR -263 242 1 24 0 0 0 chr13 101789436 101789460 -17955438 + AT_rich Low_complexity Low_complexity 1 24 0 385 250 29 10 chr13 101793058 101793162 -17951736 + MER103 DNA DNA 16 121 -45 485 244 61 0 chr13 101793918 101794049 -17950849 - MIR SINE MIR -103 159 21 302 136 51 0 chr13 101794722 101794781 -17950117 + L1MC1 LINE L1 6272 6333 0 225 254 32 0 chr13 101795007 101795070 -17949828 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 336 279 96 50 chr13 101795656 101795875 -17949023 - MIR SINE MIR 0 262 34 562 151 0 66 chr13 101796822 101796928 -17947970 - FLAM_A SINE Alu -21 121 23 439 265 60 24 chr13 101847120 101847286 -17897612 - LTR33 LTR ERVL -37 484 313 21 0 0 0 chr13 101847932 101847953 -17896945 + AT_rich Low_complexity Low_complexity 1 21 0 2015 263 82 18 chr13 101848662 101848732 -17896166 + L2 LINE L2 2253 2317 -996 1046 188 67 156 chr13 101848732 101849296 -17895602 + MLT2B1 LTR ERVL 5 518 -2 2015 263 82 18 chr13 101849296 101850229 -17894669 + L2 LINE L2 2317 3313 0 269 278 71 48 chr13 101850394 101850520 -17894378 + MIR SINE MIR 6 134 -128 1114 298 35 57 chr13 101850531 101851198 -17893700 - MLT2F LTR ERVL 0 663 12 219 204 0 0 chr13 101852146 101852195 -17892703 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 209 287 229 8 chr13 101852418 101852540 -17892358 - MIR3 SINE MIR -51 157 9 713 209 74 29 chr13 101852749 101852993 -17891905 + L1MC5 LINE L1 7643 7897 -64 492 269 264 5 chr13 101853042 101853235 -17891663 + MIR SINE MIR 2 244 -18 703 342 72 16 chr13 101854061 101854435 -17890463 + L2 LINE L2 2917 3311 -2 747 112 0 0 chr13 101854439 101854555 -17890343 + (TGGA)n Simple_repeat Simple_repeat 1 116 0 872 131 46 8 chr13 101855365 101855495 -17889403 + AluSx SINE Alu 1 135 -177 1867 110 8 4 chr13 101855495 101855750 -17889148 + AluSc SINE Alu 35 290 -19 38 0 0 0 chr13 101855750 101855788 -17889110 + AT_rich Low_complexity Low_complexity 1 38 0 1094 150 5 26 chr13 101855788 101855981 -17888917 + AluSx SINE Alu 117 305 -7 278 285 146 19 chr13 101857115 101857273 -17887625 - MIR SINE MIR -63 199 22 267 181 24 24 chr13 101857282 101857365 -17887533 + (TAA)n Simple_repeat Simple_repeat 1 83 0 414 233 7 20 chr13 101857395 101857535 -17887363 + MIR SINE MIR 20 154 -65 2445 104 48 28 chr13 101857874 101858229 -17886669 - THE1B LTR MaLR 0 364 3 3340 91 52 2 chr13 101858231 101858673 -17886225 - THE1B-int LTR MaLR 0 1580 1117 631 141 94 8 chr13 101858675 101858803 -17886095 + MER103 DNA DNA 10 148 -18 281 288 26 124 chr13 101859342 101859495 -17885403 + MER91C DNA MER1_type 3 140 0 21 0 0 0 chr13 101859682 101859703 -17885195 + AT_rich Low_complexity Low_complexity 1 21 0 206 292 66 35 chr13 101859902 101860067 -17884831 + MIR SINE MIR 42 207 -55 2120 136 0 10 chr13 101860354 101860664 -17884234 - AluSx SINE Alu -5 307 1 1174 160 186 8 chr13 101861149 101861386 -17883512 - AluYa5 SINE Alu 0 311 33 220 263 92 13 chr13 101861725 101861801 -17883097 + MIR3 SINE MIR 121 202 -6 387 250 29 10 chr13 101862718 101862822 -17882076 - MER103 DNA DNA -45 121 16 2303 235 57 14 chr13 101864541 101865099 -17879799 + MER119 DNA MER1_type 1 582 -1 202 338 13 0 chr13 101865199 101865276 -17879622 - MIR SINE MIR 0 262 185 200 333 13 0 chr13 101866103 101866178 -17878720 + (TATG)n Simple_repeat Simple_repeat 3 78 0 213 107 30 84 chr13 101866187 101866318 -17878580 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 * 330 132 69 25 chr13 101866287 101866446 -17878452 + (TA)n Simple_repeat Simple_repeat 2 167 0 476 331 126 47 chr13 101866534 101867399 -17877499 - L2 LINE L2 0 3272 2275 2319 79 0 0 chr13 101867399 101867720 -17877178 + AluY SINE Alu 1 321 0 476 331 126 47 chr13 101867720 101867776 -17877122 - L2 LINE L2 -997 2275 2225 235 200 14 14 chr13 101867991 101868061 -17876837 + GA-rich Low_complexity Low_complexity 3 72 0 242 250 0 102 chr13 101868103 101868191 -17876707 - L2 LINE L2 0 3272 3194 609 251 141 0 chr13 101868314 101868477 -17876421 + MER5A DNA MER1_type 4 189 0 688 369 42 26 chr13 101868573 101868674 -17876224 - L2 LINE L2 -475 2839 2741 1663 199 79 28 chr13 101868674 101869030 -17875868 - MLT1A2 LTR MaLR 0 374 1 688 369 42 26 chr13 101869030 101869386 -17875512 - L2 LINE L2 -573 2741 2375 245 295 26 0 chr13 101869436 101869514 -17875384 - MIR SINE MIR 0 262 183 270 0 0 0 chr13 101870640 101870670 -17874228 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 292 146 55 18 chr13 101871534 101871644 -17873254 + (CA)n Simple_repeat Simple_repeat 2 115 0 785 274 95 19 chr13 101871644 101871969 -17872929 + L2 LINE L2 2964 3313 0 749 246 89 0 chr13 101872969 101873172 -17871726 - MIR SINE MIR -2 260 40 380 270 111 27 chr13 101873352 101873543 -17871355 + MIR SINE MIR 7 214 -48 21 0 0 0 chr13 101874925 101874946 -17869952 + AT_rich Low_complexity Low_complexity 1 21 0 256 25 0 50 chr13 101875716 101875756 -17869142 + (GAAA)n Simple_repeat Simple_repeat 1 38 0 390 184 0 0 chr13 101875756 101875832 -17869066 + GA-rich Low_complexity Low_complexity 4 79 0 228 209 0 0 chr13 101877597 101877640 -17867258 - MIR3 SINE MIR -3 205 163 248 308 123 57 chr13 101878614 101879078 -17865820 - L2 LINE L2 -56 3216 2722 1703 173 21 72 chr13 101879125 101879512 -17865386 + MLT1B LTR MaLR 22 388 -2 419 321 27 38 chr13 101879978 101880162 -17864736 + MIR3 SINE MIR 23 204 -4 2534 74 0 0 chr13 101880255 101880565 -17864333 - AluY SINE Alu -1 310 1 180 0 0 0 chr13 101880619 101880639 -17864259 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr13 101881485 101881514 -17863384 + AT_rich Low_complexity Low_complexity 1 29 0 431 241 45 9 chr13 101882043 101882155 -17862743 + L1 LINE L1 3841 3956 -2190 1256 260 49 35 chr13 101883852 101884412 -17860486 + L2 LINE L2 2738 3312 -1 257 235 17 143 chr13 101884647 101884766 -17860132 + MIR SINE MIR 48 151 -111 22 80 0 0 chr13 101884826 101884876 -17860022 + AT_rich Low_complexity Low_complexity 1 50 0 219 291 109 45 chr13 101885170 101885280 -17859618 - L2 LINE L2 0 3272 3156 1801 278 119 14 chr13 101885807 101886816 -17858082 + L2 LINE L2 2203 3312 -1 266 277 85 11 chr13 101887759 101887853 -17857045 + L2 LINE L2 3159 3259 -13 991 246 8 20 chr13 101887859 101888103 -17856795 + MIR SINE MIR 21 261 -1 673 269 82 19 chr13 101888125 101888333 -17856565 + MIR SINE MIR 8 228 -34 563 279 13 7 chr13 101889946 101890100 -17854798 - MLT1C LTR MaLR 0 467 313 310 104 0 0 chr13 101890094 101890142 -17854756 - Alu SINE Alu -3 299 252 * 24 0 0 0 chr13 101890881 101890905 -17853993 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr13 101892736 101892760 -17852138 + (A)n Simple_repeat Simple_repeat 1 24 0 234 81 0 0 chr13 101895148 101895185 -17849713 + (A)n Simple_repeat Simple_repeat 1 37 0 224 272 122 89 chr13 101896206 101896386 -17848512 - MIR SINE MIR -31 231 46 2319 110 0 3 chr13 101896628 101896937 -17847961 - AluSx SINE Alu -4 308 1 355 243 35 47 chr13 101897535 101897704 -17847194 + Charlie7 DNA MER1_type 2440 2606 -6 1820 121 0 0 chr13 101898123 101898371 -17846527 + AluSp SINE Alu 1 248 -65 428 222 178 22 chr13 101899356 101899491 -17845407 - MER5A DNA MER1_type 0 189 34 241 269 87 27 chr13 101900522 101900664 -17844234 - MIR3 SINE MIR -13 249 64 360 0 0 0 chr13 101900959 101900999 -17843899 + (TG)n Simple_repeat Simple_repeat 1 40 0 450 0 0 0 chr13 101901234 101901284 -17843614 + (TA)n Simple_repeat Simple_repeat 2 51 0 1810 29 0 14 chr13 101901284 101901486 -17843412 - L1PA5 LINE L1 -8 6146 5946 515 328 112 7 chr13 101902113 101902418 -17842480 - L3 LINE CR1 -13 1564 1228 247 313 31 10 chr13 101902433 101902529 -17842369 - L3 LINE CR1 -550 1027 930 480 257 59 21 chr13 101904470 101904657 -17840241 + L1ME3A LINE L1 5977 6170 0 298 222 16 0 chr13 101905675 101905738 -17839160 - L2 LINE L2 -214 3058 2995 269 401 15 0 chr13 101905815 101905947 -17838951 - L2 LINE L2 -494 2820 2687 201 191 0 64 chr13 101907451 101907498 -17837400 + L2 LINE L2 3262 3305 -8 324 125 18 18 chr13 101908167 101908223 -17836675 + MER5A DNA MER1_type 47 102 -87 318 323 0 11 chr13 101908223 101908316 -17836582 - MER5A DNA MER1_type -63 126 35 541 280 86 16 chr13 101908335 101908521 -17836377 + MIR SINE MIR 7 205 -57 216 86 0 0 chr13 101909092 101909127 -17835771 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 242 273 26 13 chr13 101911397 101911474 -17833424 - L2 LINE L2 0 3272 3195 533 249 32 42 chr13 101913313 101913502 -17831396 + MER117 DNA MER1_type 11 197 0 303 227 76 61 chr13 101914045 101914177 -17830721 - MIR SINE MIR -21 241 108 315 0 0 0 chr13 101914383 101914418 -17830480 + (CA)n Simple_repeat Simple_repeat 1 35 0 23 54 0 0 chr13 101915251 101915288 -17829610 + AT_rich Low_complexity Low_complexity 1 37 0 275 139 0 0 chr13 101916210 101916253 -17828645 - L1MC4 LINE L1 -1342 6700 6658 1801 105 45 52 chr13 101916254 101916540 -17828358 - AluSx SINE Alu -26 286 3 576 299 5 5 chr13 101917611 101917808 -17827090 - L1ME4a LINE L1 -292 5829 5633 267 313 77 60 chr13 101917823 101918289 -17826609 - HAL1b LINE L1 -763 585 112 1986 107 11 0 chr13 101919240 101919520 -17825378 + L1MA3 LINE L1 6023 6305 0 2921 16 0 0 chr13 101919940 101920258 -17824640 - AluYb8 SINE Alu 0 318 1 340 289 49 14 chr13 101920271 101920413 -17824485 + L2 LINE L2 3163 3309 -4 1094 256 45 27 chr13 101920458 101920794 -17824104 - MER93a LTR ERV1 0 402 61 336 292 150 18 chr13 101920916 101921029 -17823869 + L2 LINE L2 3145 3272 0 2146 78 0 133 chr13 101922579 101922940 -17821958 + AluSq SINE Alu 1 313 0 1476 81 54 14 chr13 101923023 101923246 -17821652 + L1MA5A LINE L1 6036 6267 -30 1957 236 107 94 chr13 101923812 101924873 -17820025 - L2 LINE L2 -260 3053 1990 686 260 95 21 chr13 101924991 101925233 -17819665 + Charlie8 DNA MER1_type 1 260 -2157 181 258 236 22 chr13 101925385 101925474 -17819424 - MIR SINE MIR -80 128 21 1461 142 58 86 chr13 101926018 101926343 -17818555 + MLT1C LTR MaLR 5 320 -147 608 191 56 16 chr13 101926445 101926571 -17818327 + MLT1C LTR MaLR 337 467 0 249 254 119 0 chr13 101927746 101927813 -17817085 - L2 LINE L2 -23 3249 3175 1708 190 0 10 chr13 101928275 101928585 -17816313 - AluJo SINE Alu -5 307 1 353 315 160 17 chr13 101928729 101928910 -17815988 + MIR SINE MIR 35 241 -21 487 189 81 0 chr13 101929354 101929465 -17815433 + MER91C DNA MER1_type 20 139 -1 1410 261 42 34 chr13 101929511 101930133 -17814765 - L2 LINE L2 -8 3305 2687 372 294 56 38 chr13 101931278 101931438 -17813460 - MIR SINE MIR -77 185 23 348 267 95 26 chr13 101931680 101931796 -17813102 - MIR SINE MIR -114 148 25 2147 95 11 3 chr13 101932377 101932660 -17812238 - AluSg SINE Alu -4 306 22 264 312 76 44 chr13 101932816 101933290 -17811608 - L1M4 LINE L1 -1524 4622 4134 2035 124 34 0 chr13 101934296 101934587 -17810311 - AluSx SINE Alu -11 301 1 22 56 0 0 chr13 101934593 101934629 -17810269 + AT_rich Low_complexity Low_complexity 1 36 0 311 363 8 0 chr13 101935862 101935986 -17808912 - MIR3 SINE MIR -51 157 33 26 30 0 0 chr13 101936738 101936771 -17808127 + AT_rich Low_complexity Low_complexity 1 33 0 189 74 0 0 chr13 101938805 101938832 -17806066 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 22 35 0 0 chr13 101938939 101938968 -17805930 + AT_rich Low_complexity Low_complexity 1 29 0 196 340 47 38 chr13 101940075 101940181 -17804717 - MIR3 SINE MIR -1 207 101 203 161 0 0 chr13 101940278 101940309 -17804589 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1169 271 134 21 chr13 101940312 101941054 -17803844 - L2 LINE L2 -6 3307 2468 1870 104 12 95 chr13 101943160 101943487 -17801411 - AluSx SINE Alu -12 300 1 382 303 43 31 chr13 101943846 101944008 -17800890 + MER20B DNA MER1_type 7 170 -613 2179 115 0 0 chr13 101944030 101944318 -17800580 - AluSx SINE Alu -24 288 1 1030 222 109 59 chr13 101944333 101944405 -17800493 + MER20B DNA MER1_type 287 354 -429 2293 81 0 53 chr13 101944405 101944726 -17800172 - AluY SINE Alu -6 305 2 1030 222 109 59 chr13 101944726 101945113 -17799785 + MER20B DNA MER1_type 354 769 -14 221 248 155 41 chr13 101946188 101946286 -17798612 - MIR SINE MIR -73 135 47 27 22 0 22 chr13 101946334 101946360 -17798538 + AT_rich Low_complexity Low_complexity 1 27 -17 2228 119 0 0 chr13 101946360 101946662 -17798236 + AluSx SINE Alu 1 302 -10 27 22 0 22 chr13 101946662 101946680 -17798218 + AT_rich Low_complexity Low_complexity 27 44 0 40 21 0 0 chr13 101947110 101947157 -17797741 + AT_rich Low_complexity Low_complexity 1 47 0 551 174 0 219 chr13 101948338 101948503 -17796395 - MER5A DNA MER1_type 0 189 92 1917 117 10 27 chr13 101948503 101948802 -17796096 - AluSx SINE Alu -18 294 1 551 174 0 219 chr13 101948802 101948878 -17796020 - MER5A DNA MER1_type -97 92 1 316 256 84 101 chr13 101949088 101949326 -17795572 - L2 LINE L2 -6 3307 3074 299 295 77 51 chr13 101950394 101950539 -17794359 - MIR SINE MIR -65 143 31 1483 184 82 25 chr13 101950588 101950953 -17793945 - Charlie5 DNA MER1_type 0 2624 2239 578 197 16 8 chr13 101950960 101951082 -17793816 - Charlie5 DNA MER1_type -2489 123 1 2167 107 43 0 chr13 101951509 101951808 -17793090 - AluSx SINE Alu 0 312 1 180 0 0 0 chr13 101951824 101951844 -17793054 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 185 81 0 27 chr13 101951846 101951883 -17793015 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6580 57 15 41 chr13 101951883 101953037 -17791861 - L1PA8A LINE L1 -29 6102 4961 684 155 106 0 chr13 101953097 101953239 -17791659 + L1MA8 LINE L1 6133 6289 -2 2257 114 0 7 chr13 101954179 101954487 -17790411 + AluSq SINE Alu 1 306 -7 2028 109 0 84 chr13 101954607 101954929 -17789969 + AluSx SINE Alu 1 295 -17 336 290 65 8 chr13 101955355 101955479 -17789419 - L2 LINE L2 -10 3303 3173 1966 122 4 4 chr13 101958374 101958645 -17786253 + AluSg SINE Alu 1 271 -39 2392 79 0 20 chr13 101958885 101959190 -17785708 + AluSx SINE Alu 1 299 -13 2347 60 10 7 chr13 101959193 101959495 -17785403 + AluY SINE Alu 1 303 -8 450 311 107 53 chr13 101960057 101961078 -17783820 - L1M4 LINE L1 -2700 3446 2345 1187 93 6 0 chr13 101961078 101961250 -17783648 - L1PB1 LINE L1 -1 6150 5978 450 311 107 53 chr13 101961250 101961401 -17783497 - L1M4 LINE L1 -3801 2345 2204 181 379 11 0 chr13 101961864 101961951 -17782947 + MER5B DNA MER1_type 90 177 -1 520 289 98 0 chr13 101962327 101962500 -17782398 + L3 LINE CR1 1189 1378 -199 238 293 12 49 chr13 101964452 101964534 -17780364 - L2 LINE L2 -1 3312 3234 227 237 0 17 chr13 101965174 101965233 -17779665 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 813 39 0 19 chr13 101965354 101965490 -17779408 + L1PA3 LINE L1 6050 6183 0 203 333 0 0 chr13 101965533 101965596 -17779302 + L2 LINE L2 3251 3313 0 437 267 37 15 chr13 101965603 101965738 -17779160 + L2 LINE L2 3159 3296 -17 231 341 47 0 chr13 101965750 101965835 -17779063 - MIR SINE MIR -73 135 47 287 173 0 93 chr13 101966597 101966672 -17778226 - L2 LINE L2 -88 3225 3158 342 317 31 6 chr13 101966683 101966844 -17778054 + L1ME LINE L1 5550 5714 -407 374 0 22 0 chr13 101966919 101966965 -17777933 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 314 275 58 100 chr13 101967224 101967599 -17777299 - MLT1J LTR MaLR -114 336 9 1356 122 87 9 chr13 101967615 101967845 -17777053 - MER1B DNA MER1_type 0 339 132 449 279 87 22 chr13 101968471 101968654 -17776244 - MIR SINE MIR -10 252 58 360 316 141 6 chr13 101969767 101969944 -17774954 - MIR SINE MIR -30 232 32 334 275 133 2 chr13 101970182 101970325 -17774573 - MIR SINE MIR -62 146 29 299 275 213 75 chr13 101971822 101971982 -17772916 + MIR SINE MIR 10 191 -71 1872 146 0 24 chr13 101972755 101973069 -17771829 + AluJb SINE Alu 1 312 0 473 241 30 69 chr13 101973487 101973690 -17771208 + L2 LINE L2 1818 2012 -1302 232 209 0 0 chr13 101975034 101975077 -17769821 - MIR3 SINE MIR -3 205 163 635 134 0 0 chr13 101975555 101975652 -17769246 - AluY SINE Alu -221 97 1 1031 163 38 78 chr13 101975653 101975728 -17769170 - MLT1B LTR MaLR -141 249 173 2297 99 0 3 chr13 101975728 101976022 -17768876 + AluSx SINE Alu 1 293 -19 1031 163 38 78 chr13 101976022 101976250 -17768648 - MLT1B LTR MaLR -217 173 9 247 261 139 21 chr13 101976652 101976807 -17768091 + MIR SINE MIR 20 192 -62 557 266 35 55 chr13 101976880 101977136 -17767762 + MIR SINE MIR 12 262 0 392 211 13 0 chr13 101977455 101977531 -17767367 + Tigger5 DNA MER2_type 1 77 -2246 415 160 13 0 chr13 101977535 101977610 -17767288 - Tigger5 DNA MER2_type -6 2317 2242 352 244 0 0 chr13 101977600 101977682 -17767216 + Tigger5 DNA MER2_type 2242 2323 0 * 1764 129 40 3 chr13 101978464 101978767 -17766131 - MER2 DNA MER2_type -25 320 7 2094 91 10 16 chr13 101978885 101979194 -17765704 - L1MA1 LINE L1 -7 6295 5989 271 196 0 0 chr13 101979356 101979412 -17765486 + L2 LINE L2 3257 3312 -1 1842 173 46 27 chr13 101979643 101980185 -17764713 - MLT2A1 LTR ERVL 0 554 1 2047 137 3 0 chr13 101980545 101980844 -17764054 + AluJo SINE Alu 1 300 -12 244 158 0 0 chr13 101982594 101982632 -17762266 - MIR SINE MIR -112 150 113 207 0 0 0 chr13 101982657 101982680 -17762218 + (A)n Simple_repeat Simple_repeat 1 23 0 237 33 0 0 chr13 101983018 101983048 -17761850 + (ATG)n Simple_repeat Simple_repeat 3 32 0 657 277 75 9 chr13 101983056 101983269 -17761629 - MIR SINE MIR -20 242 16 189 0 0 0 chr13 101983270 101983291 -17761607 + (T)n Simple_repeat Simple_repeat 1 21 0 21 71 0 0 chr13 101984409 101984451 -17760447 + AT_rich Low_complexity Low_complexity 1 42 0 222 294 0 0 chr13 101984474 101984525 -17760373 + L2 LINE L2 2701 2751 -563 487 113 60 13 chr13 101984700 101984850 -17760048 + (CA)n Simple_repeat Simple_repeat 2 158 0 342 169 0 0 chr13 101985484 101985549 -17759349 + GA-rich Low_complexity Low_complexity 4 68 0 273 29 0 0 chr13 101985658 101985692 -17759206 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr13 101986108 101986136 -17758762 + AT_rich Low_complexity Low_complexity 1 28 0 388 264 10 20 chr13 101986322 101986439 -17758459 - MIR SINE MIR -47 161 45 211 284 40 27 chr13 101987219 101987293 -17757605 - L2 LINE L2 -221 3051 2977 1386 207 110 39 chr13 101987868 101988331 -17756567 + MLT1D LTR MaLR 8 503 -2 713 278 85 92 chr13 101988485 101988538 -17756360 + L2 LINE L2 1894 1946 -1368 1705 183 67 9 chr13 101988538 101988883 -17756015 + MLT1A1 LTR MaLR 1 365 0 713 278 85 92 chr13 101988883 101989698 -17755200 + L2 LINE L2 1946 2819 -495 203 154 39 39 chr13 101989963 101990015 -17754883 + L2 LINE L2 3261 3312 -1 434 303 40 13 chr13 101990557 101990709 -17754189 - MIR SINE MIR -88 174 19 272 392 10 0 chr13 101991136 101991233 -17753665 + MER5B DNA MER1_type 1 98 -80 2399 81 3 0 chr13 101993774 101994082 -17750816 - AluSp SINE Alu -4 309 1 216 0 0 0 chr13 101995726 101995750 -17749148 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 382 198 36 20 chr13 101995903 101996152 -17748746 + (TAGA)n Simple_repeat Simple_repeat 1 253 0 343 64 0 0 chr13 101996155 101996202 -17748696 - MADE1 DNA Mariner 0 80 34 604 170 31 0 chr13 101996217 101996376 -17748522 + (TGGA)n Simple_repeat Simple_repeat 4 167 0 310 204 21 0 chr13 101996376 101996469 -17748429 + (TAGA)n Simple_repeat Simple_repeat 1 95 0 307 308 161 14 chr13 101997776 101997919 -17746979 + MER5A DNA MER1_type 24 187 -2 443 213 58 112 chr13 101997928 101998051 -17746847 - MER5B DNA MER1_type 0 178 67 1664 165 70 7 chr13 101998051 101998336 -17746562 - AluJo SINE Alu -8 304 2 443 213 58 112 chr13 101998336 101998400 -17746498 - MER5B DNA MER1_type -111 67 1 297 219 176 17 chr13 101998491 101998610 -17746288 - L2 LINE L2 0 3313 3176 1206 147 5 25 chr13 101999496 101999694 -17745204 - AluSc SINE Alu -8 301 108 14225 115 28 16 chr13 102000063 102001719 -17743179 - Tigger1 DNA MER2_type -25 2393 698 1896 141 14 3 chr13 102001719 102002055 -17742843 + AluSx SINE Alu 1 339 0 14225 115 28 16 chr13 102002055 102002762 -17742136 - Tigger1 DNA MER2_type -1720 698 1 21 36 0 0 chr13 102006272 102006300 -17738598 + AT_rich Low_complexity Low_complexity 1 28 0 498 283 14 7 chr13 102008215 102008353 -17736545 - MIR3 SINE MIR -9 199 61 22 35 0 0 chr13 102009237 102009266 -17735632 + AT_rich Low_complexity Low_complexity 1 29 0 232 257 64 73 chr13 102010534 102010643 -17734255 - MIR SINE MIR -38 224 117 2302 105 0 13 chr13 102011735 102012048 -17732850 - AluSg SINE Alu -1 309 1 1358 151 8 17 chr13 102012063 102012301 -17732597 - MER46A DNA MER2_type 0 236 1 901 294 112 104 chr13 102012391 102012988 -17731910 - L2 LINE L2 -230 3042 2451 685 67 0 0 chr13 102012988 102013078 -17731820 - 5S rRNA rRNA -31 90 1 901 294 112 104 chr13 102013078 102013395 -17731503 - L2 LINE L2 -821 2451 2138 414 0 0 0 chr13 102013395 102013441 -17731457 + (TG)n Simple_repeat Simple_repeat 1 46 0 901 294 112 104 chr13 102013441 102013738 -17731160 - L2 LINE L2 -1134 2138 1720 252 243 247 23 chr13 102014655 102014812 -17730086 + MIR SINE MIR 31 215 -47 1806 137 3 18 chr13 102018104 102018416 -17726482 + AluJb SINE Alu 1 308 0 351 78 0 0 chr13 102018677 102018728 -17726170 + (TG)n Simple_repeat Simple_repeat 2 52 0 413 279 19 0 chr13 102019252 102019356 -17725542 + MIR3 SINE MIR 92 197 -11 21 0 0 0 chr13 102019936 102019957 -17724941 + AT_rich Low_complexity Low_complexity 1 21 0 524 292 79 17 chr13 102020073 102020251 -17724647 - MIR SINE MIR -72 190 2 2323 109 3 0 chr13 102020364 102020676 -17724222 + AluSp SINE Alu 1 313 0 203 0 0 36 chr13 102023374 102023402 -17721496 + (GA)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr13 102023582 102023602 -17721296 + (TA)n Simple_repeat Simple_repeat 2 21 0 496 115 0 0 chr13 102024040 102024118 -17720780 - AluS SINE Alu -1 309 232 2685 30 0 0 chr13 102024118 102024423 -17720475 - AluY SINE Alu -6 305 1 1854 98 12 0 chr13 102024423 102024667 -17720231 - AluSq SINE Alu -66 247 1 218 290 0 43 chr13 102025639 102025708 -17719190 - MIR SINE MIR -177 85 20 181 260 146 31 chr13 102026810 102026906 -17717992 - MIR SINE MIR -109 153 47 550 266 109 40 chr13 102027054 102027257 -17717641 - MIR SINE MIR -3 205 40 224 288 169 25 chr13 102027261 102027379 -17717519 - MIR3 SINE MIR -64 144 10 437 302 108 14 chr13 102028176 102028388 -17716510 - MIR SINE MIR 0 262 31 28 29 0 0 chr13 102029363 102029398 -17715500 + AT_rich Low_complexity Low_complexity 1 35 0 216 241 0 35 chr13 102029645 102029703 -17715195 + GA-rich Low_complexity Low_complexity 1 56 0 898 171 15 10 chr13 102029707 102029906 -17714992 + L1MB3 LINE L1 5983 6182 -1 2206 121 7 0 chr13 102030188 102030495 -17714403 + AluSx SINE Alu 1 309 -3 370 258 75 33 chr13 102030498 102030618 -17714280 - L2 LINE L2 -29 3284 3160 318 115 0 0 chr13 102031039 102031091 -17713807 + (TC)n Simple_repeat Simple_repeat 2 53 0 230 0 33 0 chr13 102031092 102031122 -17713776 + (CA)n Simple_repeat Simple_repeat 2 32 0 262 149 11 81 chr13 102031801 102031888 -17713010 + (TTATA)n Simple_repeat Simple_repeat 3 83 0 931 96 169 45 chr13 102032649 102032827 -17712071 - AluSg/x SINE Alu -11 301 102 23 0 0 29 chr13 102033865 102033880 -17711018 + AT_rich Low_complexity Low_complexity 1 15 -18 2316 101 0 3 chr13 102033880 102034177 -17710721 - AluSx SINE Alu -16 296 1 23 0 0 29 chr13 102034177 102034195 -17710703 + AT_rich Low_complexity Low_complexity 15 33 0 25 0 0 0 chr13 102034692 102034717 -17710181 + AT_rich Low_complexity Low_complexity 1 25 0 225 328 60 0 chr13 102035158 102035225 -17709673 - L2 LINE L2 -42 3230 3160 338 299 10 0 chr13 102036351 102036448 -17708450 + Charlie8 DNA MER1_type 122 219 -2198 285 98 0 0 chr13 102038272 102038313 -17706585 + (TA)n Simple_repeat Simple_repeat 1 41 0 1873 166 6 13 chr13 102039398 102039712 -17705186 + AluJo SINE Alu 1 312 0 22 35 0 0 chr13 102039963 102039992 -17704906 + AT_rich Low_complexity Low_complexity 1 29 0 193 116 23 23 chr13 102042530 102042573 -17702325 + (TA)n Simple_repeat Simple_repeat 2 44 0 23 54 0 0 chr13 102043622 102043659 -17701239 + AT_rich Low_complexity Low_complexity 1 37 0 198 71 0 0 chr13 102046618 102046646 -17698252 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 365 384 132 0 chr13 102047458 102047677 -17697221 + MIR SINE MIR 15 262 0 208 174 184 92 chr13 102047882 102047980 -17696918 - L2 LINE L2 -8 3305 3199 1354 203 62 68 chr13 102048030 102048097 -17696801 - MLT1C LTR MaLR 0 467 401 1740 132 40 0 chr13 102048097 102048347 -17696551 + AluSx SINE Alu 1 260 -52 183 100 0 0 chr13 102048347 102048377 -17696521 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1354 203 62 68 chr13 102048377 102048777 -17696121 - MLT1C LTR MaLR -64 403 2 202 300 0 50 chr13 102048942 102049022 -17695876 + MIR3 SINE MIR 124 199 -9 560 265 99 31 chr13 102049265 102049488 -17695410 - MIR SINE MIR -4 258 21 416 209 35 0 chr13 102049500 102049586 -17695312 + MER5A DNA MER1_type 9 97 -92 206 284 53 95 chr13 102049785 102049880 -17695018 + L2 LINE L2 2638 2728 -586 1306 242 78 59 chr13 102049883 102050884 -17694014 - MER69B DNA AcHobo -1300 1226 79 2194 119 0 0 chr13 102050884 102051179 -17693719 - AluSg SINE Alu -5 305 11 1306 242 78 59 chr13 102051179 102051259 -17693639 - MER69B DNA AcHobo -2447 79 2 304 340 95 60 chr13 102051358 102051720 -17693178 + L2 LINE L2 2821 3202 -70 2165 133 36 31 chr13 102051720 102052080 -17692818 - THE1B LTR MaLR -2 362 1 304 340 95 60 chr13 102052080 102052150 -17692748 + L2 LINE L2 3202 3268 -4 960 261 90 12 chr13 102052771 102053170 -17691728 + LTR16A LTR ERVL 17 446 -4 649 270 52 19 chr13 102054144 102054355 -17690543 + MIR SINE MIR 9 226 -36 609 188 0 7 chr13 102054910 102055048 -17689850 - MER96B DNA MER1_type? -31 386 250 498 269 93 32 chr13 102055157 102055566 -17689332 + L1ME LINE L1 3879 4312 -1834 603 248 132 27 chr13 102055566 102055824 -17689074 - MLT1J1 LTR MaLR 0 446 162 482 260 11 17 chr13 102055895 102056076 -17688822 + L1ME LINE L1 4490 4669 -1477 634 287 38 60 chr13 102056197 102057064 -17687834 + L1ME LINE L1 4633 5475 -691 227 277 72 0 chr13 102057079 102057162 -17687736 + L1ME LINE L1 5524 5612 -558 494 280 15 8 chr13 102057289 102057421 -17687477 + MIR SINE MIR 20 152 -110 2060 110 23 19 chr13 102058644 102058953 -17685945 + AluSx SINE Alu 3 312 0 560 275 6 12 chr13 102059250 102059421 -17685477 - L1ME3A LINE L1 -225 5945 5776 407 289 128 24 chr13 102059735 102060033 -17684865 - L1ME3A LINE L1 -984 5162 4834 560 285 93 40 chr13 102060081 102060748 -17684150 - L1MEd LINE L1 -794 2107 1302 266 146 0 18 chr13 102061470 102061525 -17683373 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 995 114 0 0 chr13 102061907 102062039 -17682859 - AluY SINE Alu -179 132 1 1866 131 0 0 chr13 102063305 102063557 -17681341 - AluSx SINE Alu -27 285 34 352 341 79 94 chr13 102064564 102064980 -17679918 - L2 LINE L2 -2 3270 2861 2260 121 0 3 chr13 102065435 102065749 -17679149 + AluSq SINE Alu 1 313 0 24 0 0 0 chr13 102065849 102065873 -17679025 + AT_rich Low_complexity Low_complexity 1 24 0 2859 7 0 0 chr13 102067177 102067485 -17677413 + AluY SINE Alu 1 308 -3 318 159 29 58 chr13 102067535 102067604 -17677294 - MIR SINE MIR -108 154 88 1142 235 30 30 chr13 102068198 102068496 -17676402 - L1MEd LINE L1 -6242 298 1 2070 170 25 15 chr13 102068524 102068918 -17675980 - L1MB3 LINE L1 -54 6129 5732 236 271 75 65 chr13 102070028 102070227 -17674671 + L1MEd LINE L1 19 219 -5900 2062 153 36 22 chr13 102070874 102071233 -17673665 + THE1B LTR MaLR 1 364 0 264 302 26 43 chr13 102071664 102071780 -17673118 - MIR SINE MIR -112 150 37 315 293 67 53 chr13 102072031 102072181 -17672717 - MIR SINE MIR -71 191 40 195 203 174 29 chr13 102072351 102072420 -17672478 - MIR3 SINE MIR -21 187 109 462 240 58 0 chr13 102072570 102072691 -17672207 - MER94 DNA DNA 0 134 7 22 35 0 0 chr13 102074428 102074457 -17670441 + AT_rich Low_complexity Low_complexity 1 29 0 184 321 99 53 chr13 102075316 102075447 -17669451 + MER5B DNA MER1_type 4 140 -38 4232 166 14 5 chr13 102075730 102076469 -17668429 + MER49 LTR ERV1 179 923 0 260 288 144 17 chr13 102078161 102078279 -17666619 - L2 LINE L2 -2 3270 3138 31 44 0 0 chr13 102079424 102079469 -17665429 + AT_rich Low_complexity Low_complexity 1 45 0 259 282 149 50 chr13 102079478 102079659 -17665239 + L2 LINE L2 3099 3297 -16 574 298 85 43 chr13 102079769 102080229 -17664669 - MLT1L LTR MaLR -5 610 132 198 0 0 0 chr13 102085243 102085265 -17659633 + (A)n Simple_repeat Simple_repeat 1 22 0 1259 193 56 7 chr13 102086825 102087130 -17657768 - MER33 DNA MER1_type 0 324 5 484 305 40 17 chr13 102087144 102087321 -17657577 + MIR SINE MIR 82 262 0 837 87 87 0 chr13 102088245 102088372 -17656526 + MER85 DNA T2_type 1 138 -1 28 0 0 0 chr13 102090053 102090081 -17654817 + AT_rich Low_complexity Low_complexity 1 28 0 797 235 115 12 chr13 102090090 102090413 -17654485 + HAL1b LINE L1 614 969 -379 * 1233 151 42 103 chr13 102090411 102090742 -17654156 - L1MA10 LINE L1 0 6334 6024 182 159 182 0 chr13 102090877 102090921 -17653977 + MIR3 SINE MIR 146 197 -11 22 0 0 0 chr13 102091091 102091113 -17653785 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 102092158 102092180 -17652718 + AT_rich Low_complexity Low_complexity 1 22 0 560 265 27 45 chr13 102092248 102092471 -17652427 + MER112 DNA MER1_type 1 219 -41 1602 183 0 14 chr13 102093183 102093467 -17651431 - AluJo SINE Alu -30 282 3 266 295 57 12 chr13 102093605 102093699 -17651199 + MIR SINE MIR 64 160 -63 1638 204 80 0 chr13 102094636 102094974 -17649924 - MLT1A1 LTR MaLR 0 365 1 270 56 0 0 chr13 102095153 102095189 -17649709 + (CATA)n Simple_repeat Simple_repeat 4 39 0 485 238 32 8 chr13 102095894 102096020 -17648878 - MER94 DNA DNA -1 133 5 1758 266 67 17 chr13 102096243 102096765 -17648133 + MLT1H1 LTR MaLR 8 555 0 217 279 0 0 chr13 102097236 102097279 -17647619 + L2 LINE L2 3222 3264 -8 263 275 25 12 chr13 102097572 102097652 -17647246 - L2 LINE L2 -24 3289 3209 219 69 0 0 chr13 102097749 102097778 -17647120 + (T)n Simple_repeat Simple_repeat 1 29 0 190 274 32 32 chr13 102098070 102098132 -17646766 + L3 LINE CR1 243 304 -1273 362 240 183 0 chr13 102098317 102098421 -17646477 - MIR SINE MIR -67 141 19 2517 254 111 20 chr13 102101021 102102412 -17642486 - L1ME3 LINE L1 0 6556 4979 303 28 0 0 chr13 102102412 102102448 -17642450 + (CA)n Simple_repeat Simple_repeat 1 36 0 2517 254 111 20 chr13 102102448 102102766 -17642132 - L1ME3 LINE L1 -1577 4979 4691 3411 176 100 12 chr13 102102945 102103931 -17640967 - L1MD1 LINE L1 0 6242 5137 1533 254 130 20 chr13 102103928 102104862 -17640036 - L1ME3 LINE L1 -3890 2650 1679 * 862 258 99 48 chr13 102104867 102105410 -17639488 - L1ME3 LINE L1 -5059 1484 914 307 290 102 16 chr13 102105455 102105690 -17639208 - L1ME3 LINE L1 -5589 941 687 302 202 176 42 chr13 102105755 102105874 -17639024 - L1ME3 LINE L1 -5728 802 668 416 281 86 62 chr13 102105953 102106259 -17638639 - L1ME3 LINE L1 -5882 648 57 222 37 0 0 chr13 102107025 102107052 -17637846 + (TA)n Simple_repeat Simple_repeat 2 28 0 226 271 117 42 chr13 102107308 102107548 -17637350 + L1ME4a LINE L1 5753 6010 -111 332 272 61 130 chr13 102107655 102107916 -17636982 + L3 LINE CR1 1262 1504 -73 340 297 0 120 chr13 102108297 102108472 -17636426 - MER5A DNA MER1_type 0 189 36 216 309 36 45 chr13 102108374 102108484 -17636414 + MER5A DNA MER1_type 69 177 -12 * 510 316 110 38 chr13 102109325 102109717 -17635181 + L2 LINE L2 2894 3313 0 285 299 55 47 chr13 102110160 102110287 -17634611 - MIR3 SINE MIR -36 172 45 286 293 134 45 chr13 102110851 102111008 -17633890 - MIR SINE MIR -63 199 29 2441 62 0 0 chr13 102111460 102111750 -17633148 + AluY SINE Alu 1 290 -21 629 90 9 0 chr13 102111750 102111861 -17633037 + (TA)n Simple_repeat Simple_repeat 2 113 0 228 35 0 0 chr13 102112884 102112913 -17631985 + (CA)n Simple_repeat Simple_repeat 2 30 0 1046 104 0 0 chr13 102113410 102113544 -17631354 - AluSq SINE Alu -55 258 125 25 31 0 0 chr13 102117734 102117766 -17627132 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr13 102118530 102118556 -17626342 + AT_rich Low_complexity Low_complexity 1 26 0 2245 85 14 3 chr13 102118917 102119212 -17625686 - AluY SINE Alu -13 298 1 1841 99 0 0 chr13 102119626 102119868 -17625030 + AluY SINE Alu 58 299 -12 298 252 34 25 chr13 102119869 102119988 -17624910 - HAL1b LINE L1 -74 1274 1155 252 301 11 18 chr13 102120006 102120104 -17624794 - MIR SINE MIR -80 128 30 2110 151 0 0 chr13 102121127 102121431 -17623467 + AluSx SINE Alu 1 304 -8 803 236 53 16 chr13 102121456 102121702 -17623196 - L1ME LINE L1 -397 5765 5511 596 232 26 0 chr13 102121702 102121857 -17623041 - LTR16A LTR ERVL 0 450 292 411 233 76 67 chr13 102122082 102122544 -17622354 - L1ME LINE L1 -669 5515 5069 313 217 181 22 chr13 102122775 102122913 -17621985 + MER103 DNA DNA 3 162 -4 801 241 124 52 chr13 102123077 102123554 -17621344 + L1MC4 LINE L1 7119 7629 -413 2228 85 0 11 chr13 102123709 102124016 -17620882 + AluY SINE Alu 1 304 0 785 131 36 122 chr13 102126506 102126727 -17618171 - MER3 DNA MER1_type -2 207 6 407 252 89 0 chr13 102126833 102126956 -17617942 + MER45A DNA AcHobo 45 178 0 2426 88 3 0 chr13 102127293 102127601 -17617297 - AluSc SINE Alu 0 309 1 226 240 80 0 chr13 102127676 102127726 -17617172 - L2 LINE L2 -5 3308 3255 21 0 0 0 chr13 102128456 102128477 -17616421 + AT_rich Low_complexity Low_complexity 1 21 0 2281 114 3 0 chr13 102128621 102128929 -17615969 - AluSx SINE Alu -3 309 1 21 0 0 0 chr13 102129154 102129175 -17615723 + AT_rich Low_complexity Low_complexity 1 21 0 1515 146 34 0 chr13 102129414 102129682 -17615216 - L1MC1 LINE L1 0 6333 6057 342 0 0 0 chr13 102130342 102130380 -17614518 + (CA)n Simple_repeat Simple_repeat 2 39 0 446 222 0 0 chr13 102130465 102130546 -17614352 - MER2 DNA MER2_type -256 89 9 229 267 95 29 chr13 102130722 102130827 -17614071 + L1ME4a LINE L1 4530 4641 -1505 216 233 137 0 chr13 102130983 102131056 -17613842 + MIR SINE MIR 32 114 -148 318 264 305 7 chr13 102131465 102131757 -17613141 + L1ME4a LINE L1 5739 6117 -4 253 328 51 9 chr13 102132232 102132363 -17612535 + MIR SINE MIR 19 150 -62 1746 176 35 60 chr13 102132997 102133395 -17611503 + MLT1B LTR MaLR 1 388 -2 292 351 76 56 chr13 102135156 102135458 -17609440 - L2 LINE L2 0 3272 2965 206 311 89 11 chr13 102135461 102135551 -17609347 + L2 LINE L2 2597 2693 -621 1692 176 3 33 chr13 102135810 102136112 -17608786 - AluJo SINE Alu -19 293 1 596 267 40 27 chr13 102136473 102136623 -17608275 - MER91A DNA MER1_type -29 167 16 252 0 0 0 chr13 102136864 102136892 -17608006 + (GA)n Simple_repeat Simple_repeat 2 29 0 1705 147 103 4 chr13 102136984 102137257 -17607641 - AluSx SINE Alu -12 300 1 402 316 60 45 chr13 102137333 102137668 -17607230 - MER102b DNA MER1_type -1 340 1 364 311 88 59 chr13 102137678 102137762 -17607136 + L2 LINE L2 2804 2884 -388 2155 124 0 0 chr13 102137762 102138053 -17606845 - AluSx SINE Alu -21 291 1 364 311 88 59 chr13 102138053 102138241 -17606657 + L2 LINE L2 2884 3084 -188 213 139 0 0 chr13 102138252 102138295 -17606603 + (A)n Simple_repeat Simple_repeat 1 43 0 2393 81 0 37 chr13 102138412 102138733 -17606165 + AluSc SINE Alu 1 309 0 1351 191 79 8 chr13 102138778 102139133 -17605765 + MER96B DNA MER1_type? 37 416 -1 1006 249 93 45 chr13 102139134 102139663 -17605235 - L1MEc LINE L1 -4396 2000 1447 298 234 52 0 chr13 102139727 102139804 -17605094 - L1MEc LINE L1 -6282 114 34 366 327 31 45 chr13 102139804 102140032 -17604866 - L1MDa LINE L1 -3983 2232 2059 643 303 61 40 chr13 102140326 102141214 -17603684 - L1MDa LINE L1 -4701 1695 790 21 0 0 0 chr13 102141695 102141716 -17603182 + AT_rich Low_complexity Low_complexity 1 21 0 205 359 127 31 chr13 102143089 102143348 -17601550 + L2 LINE L2 2829 3112 -160 1354 185 43 98 chr13 102143494 102144007 -17600891 + L1M4 LINE L1 2604 3088 -3058 1095 132 0 0 chr13 102144007 102144159 -17600739 + AluSg/x SINE Alu 137 288 -24 329 303 43 31 chr13 102144181 102144343 -17600555 - MER20B DNA MER1_type -613 170 7 238 325 162 0 chr13 102145074 102145228 -17599670 + MIR3 SINE MIR 30 208 0 226 346 10 10 chr13 102145384 102145488 -17599410 - MIR SINE MIR -110 152 49 655 148 30 124 chr13 102145732 102145934 -17598964 + MER96B DNA MER1_type? 1 183 -234 883 154 64 0 chr13 102146212 102146368 -17598530 + Tigger4(Zombi) DNA MER2_type 2566 2731 0 1141 144 36 22 chr13 102148628 102148850 -17596048 - L1MB2 LINE L1 -8 6163 5939 342 0 0 0 chr13 102148850 102148888 -17596010 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 752 186 0 0 chr13 102148892 102149010 -17595888 - AluJb SINE Alu -34 278 161 511 230 38 113 chr13 102149115 102149459 -17595439 - MLT1F LTR MaLR -199 343 26 504 348 137 14 chr13 102149579 102150137 -17594761 + L2 LINE L2 2616 3262 -10 224 339 64 0 chr13 102150145 102150254 -17594644 - L2 LINE L2 -2 3311 3196 947 113 27 7 chr13 102150677 102150827 -17594071 - L1MA4A LINE L1 -351 5952 5800 189 139 28 0 chr13 102152016 102152052 -17592846 + (CA)n Simple_repeat Simple_repeat 2 38 0 589 329 63 52 chr13 102152159 102152674 -17592224 - L2 LINE L2 -16 3256 2739 388 261 58 123 chr13 102152960 102153390 -17591508 + MLT1J LTR MaLR 110 511 0 2902 124 151 19 chr13 102153542 102154084 -17590814 - LTR18B LTR ERVL 0 614 1 240 302 16 0 chr13 102154918 102154981 -17589917 + L2 LINE L2 3204 3267 -46 1674 170 4 11 chr13 102155138 102155415 -17589483 + AluSx SINE Alu 1 275 -37 215 205 0 0 chr13 102155419 102155458 -17589440 + GA-rich Low_complexity Low_complexity 1 39 0 572 288 132 14 chr13 102155552 102155764 -17589134 - MIR SINE MIR 0 262 26 472 291 146 38 chr13 102156240 102156691 -17588207 - LTR33 LTR ERVL -3 518 19 732 239 47 19 chr13 102157183 102157396 -17587502 + MER58A DNA MER1_type 6 224 0 394 343 42 0 chr13 102157447 102157590 -17587308 + L2 LINE L2 3112 3260 -12 1351 248 62 37 chr13 102157961 102158341 -17586557 - LTR51 LTR ERV1 -14 657 305 2775 19 0 0 chr13 102158341 102158648 -17586250 + AluYa5 SINE Alu 1 307 -4 1351 248 62 37 chr13 102158648 102158961 -17585937 - LTR51 LTR ERV1 -366 305 1 638 208 23 128 chr13 102159126 102159391 -17585507 - L2 LINE L2 0 3313 3077 260 333 25 17 chr13 102162470 102162590 -17582308 - L2 LINE L2 -666 2648 2528 285 222 0 25 chr13 102162703 102162784 -17582114 - MER116 DNA Mariner 0 80 2 191 135 54 0 chr13 102163273 102163310 -17581588 - L3b LINE CR1 -314 1269 1231 24 53 0 0 chr13 102163927 102163965 -17580933 + AT_rich Low_complexity Low_complexity 1 38 0 2399 193 25 0 chr13 102164289 102164720 -17580178 - MER44D DNA MER2_type 0 605 109 3564 118 6 0 chr13 102164733 102165214 -17579684 + MER1A DNA MER1_type 46 529 0 366 138 0 0 chr13 102165214 102165272 -17579626 - MER44D DNA MER2_type -587 118 61 499 235 0 0 chr13 102165277 102165379 -17579519 - L1 LINE L1 -1121 5025 4924 290 172 17 17 chr13 102165382 102165440 -17579458 - MER44D DNA MER2_type -647 58 1 1739 176 0 10 chr13 102166073 102166374 -17578524 + AluJo SINE Alu 1 298 -14 273 299 55 47 chr13 102166830 102166957 -17577941 - MIR3 SINE MIR -36 172 45 280 293 134 45 chr13 102167521 102167678 -17577220 - MIR SINE MIR -63 199 29 2356 87 0 0 chr13 102168130 102168428 -17576470 + AluY SINE Alu 1 298 -13 350 252 34 25 chr13 102168429 102168548 -17576350 - HAL1b LINE L1 -74 1274 1155 246 298 13 19 chr13 102168566 102168664 -17576234 - MIR SINE MIR -80 128 30 823 164 0 8 chr13 102169688 102169816 -17575082 + AluSq/x SINE Alu 1 127 -185 934 269 18 7 chr13 102169967 102170246 -17574652 + AluJo SINE Alu 11 292 -20 10919 182 24 32 chr13 102170445 102171004 -17573894 - L1PA16 LINE L1 -9 6860 6298 2074 104 0 0 chr13 102171004 102171272 -17573626 - AluSq SINE Alu -11 302 35 10919 182 24 32 chr13 102171272 102171425 -17573473 - L1PA16 LINE L1 -571 6298 6145 1990 147 0 11 chr13 102171425 102171736 -17573162 - AluSx SINE Alu 0 308 1 10919 182 24 32 chr13 102171736 102174353 -17570545 - L1PA16 LINE L1 -724 6145 3552 8081 169 21 12 chr13 102174360 102175956 -17568942 - L1PA16 LINE L1 -4792 2057 709 2455 166 25 7 chr13 102175961 102176365 -17568533 - MSTB LTR MaLR -15 411 1 5655 162 3 3 chr13 102176365 102177243 -17567655 - L1PA16 LINE L1 -5950 899 22 449 289 119 41 chr13 102178292 102178586 -17566312 + L2 LINE L2 2903 3219 -53 2244 102 0 3 chr13 102180435 102180738 -17564160 - AluY SINE Alu -9 302 1 288 0 0 0 chr13 102180744 102180804 -17564094 + (CA)n Simple_repeat Simple_repeat 1 92 0 288 0 0 0 chr13 102180804 102180836 -17564062 + (CA)n Simple_repeat Simple_repeat 2 33 0 2869 113 59 7 chr13 102180849 102181256 -17563642 - MSTA LTR MaLR 0 428 1 673 197 20 20 chr13 102181648 102181795 -17563103 + MLT1C LTR MaLR 6 152 -315 837 152 40 13 chr13 102181798 102181949 -17562949 + MSTC LTR MaLR 274 428 0 478 238 175 7 chr13 102182200 102182343 -17562555 + MER3 DNA MER1_type 3 122 -87 282 311 38 0 chr13 102182820 102182926 -17561972 + GA-rich Low_complexity Low_complexity 3 112 0 585 314 77 54 chr13 102184057 102184435 -17560463 + L1MEd LINE L1 49 446 -5673 2042 156 53 36 chr13 102184435 102184793 -17560105 - THE1B LTR MaLR 0 364 1 585 314 77 54 chr13 102184793 102184985 -17559913 + L1MEd LINE L1 446 632 -5487 520 286 159 41 chr13 102184999 102185262 -17559636 + L1MEd LINE L1 967 1198 -5112 2271 120 0 0 chr13 102185262 102185563 -17559335 + AluSx SINE Alu 1 301 -11 520 286 159 41 chr13 102185563 102186421 -17558477 + L1MEd LINE L1 1198 2296 -4014 7808 36 8 0 chr13 102186421 102187459 -17557439 + L1PA4 LINE L1 5111 6155 0 520 286 159 41 chr13 102187459 102187559 -17557339 + L1MEd LINE L1 2296 2383 -3927 1559 181 3 34 chr13 102187780 102188078 -17556820 - AluJo SINE Alu -23 289 1 1286 192 7 40 chr13 102188514 102188790 -17556108 - AluJo SINE Alu -45 267 1 454 260 64 0 chr13 102189737 102189883 -17555015 + MIR SINE MIR 63 221 -41 2049 152 7 0 chr13 102190497 102190800 -17554098 - AluSx SINE Alu -7 305 1 21 0 0 0 chr13 102190821 102190842 -17554056 + AT_rich Low_complexity Low_complexity 1 21 0 2474 75 0 0 chr13 102190842 102191134 -17553764 + AluY SINE Alu 1 292 -19 499 294 130 45 chr13 102191340 102192090 -17552808 - L1MEd LINE L1 -3220 2909 552 862 156 89 0 chr13 102192112 102192285 -17552613 - FRAM SINE Alu 0 183 1 324 0 0 0 chr13 102193256 102193292 -17551606 + (TG)n Simple_repeat Simple_repeat 1 36 0 2455 32 14 0 chr13 102193308 102193589 -17551309 - AluY SINE Alu -26 285 1 2263 151 27 14 chr13 102195612 102195982 -17548916 - THE1C LTR MaLR 0 375 1 182 194 0 0 chr13 102196336 102196372 -17548526 + MIR SINE MIR 20 55 -207 1003 101 71 30 chr13 102196372 102196541 -17548357 + AluSp SINE Alu 130 305 -8 533 292 26 20 chr13 102196547 102196742 -17548156 + MIR SINE MIR 67 262 0 199 330 148 55 chr13 102196797 102197033 -17547865 + L2 LINE L2 2404 2661 -653 312 91 0 0 chr13 102197073 102197117 -17547781 + (A)n Simple_repeat Simple_repeat 1 44 0 600 265 46 15 chr13 102197158 102197354 -17547544 - MIR SINE MIR -59 203 2 3456 73 40 0 chr13 102198721 102199148 -17545750 - MLT2A1 LTR ERVL 0 444 1 660 258 27 60 chr13 102199418 102199717 -17545181 + L1ME4a LINE L1 5539 5827 -294 2559 157 8 5 chr13 102199799 102200201 -17544697 + MER57A LTR ERV1 1 403 0 377 328 22 39 chr13 102200436 102200616 -17544282 - L2 LINE L2 -230 3042 2866 241 270 32 71 chr13 102200781 102200907 -17543991 - L2 LINE L2 -925 2389 2269 325 330 98 53 chr13 102200970 102201724 -17543174 - L2 LINE L2 -1229 2085 1298 497 335 50 6 chr13 102202996 102203178 -17541720 + MIR SINE MIR 24 213 -49 809 280 68 0 chr13 102203773 102203980 -17540918 - MIR SINE MIR -21 241 21 185 311 0 16 chr13 102204631 102204692 -17540206 - L2 LINE L2 -8 3264 3205 185 273 0 61 chr13 102204806 102204872 -17540026 + L2 LINE L2 3252 3313 0 230 269 21 113 chr13 102204906 102205047 -17539851 - L2 LINE L2 -295 2977 2850 435 214 0 8 chr13 102205145 102205248 -17539650 - MER5A DNA MER1_type -83 106 4 212 280 0 0 chr13 102205406 102205456 -17539442 - L2 LINE L2 -12 3260 3211 396 183 0 0 chr13 102206871 102206942 -17537956 + LTR67 LTR ERVL 487 557 0 187 147 0 29 chr13 102206942 102206976 -17537922 + MIR SINE MIR 154 186 -76 195 100 0 0 chr13 102207328 102207358 -17537540 + (TG)n Simple_repeat Simple_repeat 2 31 0 405 149 14 0 chr13 102207493 102207567 -17537331 - L1MC2 LINE L1 0 6344 6270 1184 177 0 10 chr13 102207585 102207783 -17537115 - AluJo SINE Alu -18 294 99 4723 172 121 95 chr13 102207783 102209436 -17535462 + pTR5 LTR ERV1 743 2438 0 710 136 0 0 chr13 102209437 102209540 -17535358 - AluJ SINE Alu -208 104 2 258 254 177 2 chr13 102210246 102210338 -17534560 - MIR SINE MIR -51 157 52 772 201 95 0 chr13 102210365 102210534 -17534364 - MLT1A2 LTR MaLR 0 374 190 357 284 53 63 chr13 102211184 102211374 -17533524 - MIR SINE MIR -55 207 20 1543 232 80 1 chr13 102211483 102211999 -17532899 + MLT2F LTR ERVL 1 603 -60 726 183 85 20 chr13 102212059 102212212 -17532686 + MLT1B LTR MaLR 8 170 -220 2597 103 103 20 chr13 102212217 102212676 -17532222 + Tigger2 DNA MER2_type 1 2718 0 1048 179 6 0 chr13 102212695 102212868 -17532030 + MLT1B LTR MaLR 213 386 -4 415 191 0 18 chr13 102212870 102212980 -17531918 + GA-rich Low_complexity Low_complexity 3 110 0 1967 149 40 110 chr13 102212996 102213440 -17531458 - MLT2D LTR ERVL 0 414 2 308 51 0 0 chr13 102213452 102213491 -17531407 + MLT2F LTR ERVL 622 660 -3 875 180 5 118 chr13 102213697 102213809 -17531089 - MER5A DNA MER1_type -1 188 110 1840 146 111 23 chr13 102213809 102214152 -17530746 + THE1C LTR MaLR 1 373 -2 875 180 5 118 chr13 102214152 102214250 -17530648 - MER5A DNA MER1_type -79 110 2 1142 246 161 5 chr13 102214405 102214791 -17530107 + L1ME3 LINE L1 5635 6080 -82 2362 103 0 0 chr13 102214827 102215129 -17529769 - AluSx SINE Alu -10 302 1 904 198 148 16 chr13 102215149 102215392 -17529506 - ORSL DNA AcHobo 0 275 1 2405 115 6 6 chr13 102215821 102216168 -17528730 - L1PA13 LINE L1 -3 6160 5814 219 333 18 27 chr13 102216289 102216400 -17528498 - L2 LINE L2 -21 3251 3142 224 302 52 60 chr13 102217683 102217799 -17527099 - L2 LINE L2 0 3272 3158 61 73 0 0 chr13 102217855 102217979 -17526919 + AT_rich Low_complexity Low_complexity 1 124 0 275 325 145 45 chr13 102218196 102218664 -17526234 - L2 LINE L2 -431 2883 2369 472 256 184 0 chr13 102219042 102219210 -17525688 + MIR SINE MIR 54 252 -10 481 285 39 42 chr13 102219764 102220048 -17524850 - L1MEc LINE L1 -4716 1680 1398 2373 291 66 75 chr13 102220154 102221350 -17523548 - HERV16 LTR ERVL -3566 1430 246 3928 74 0 2 chr13 102221350 102221835 -17523063 - L1PB1 LINE L1 -2 6149 5666 2373 291 66 75 chr13 102221835 102221963 -17522935 - HERV16 LTR ERVL -4750 246 118 1643 139 98 35 chr13 102222208 102222525 -17522373 - MER44D DNA MER2_type 0 609 3 504 50 0 75 chr13 102224196 102224312 -17520586 - L1PA2 LINE L1 0 6155 6075 3573 69 7 7 chr13 102224522 102224969 -17519929 + MLT2A2 LTR ERVL 1 447 -6 349 331 0 32 chr13 102224971 102225095 -17519803 + MIR SINE MIR 25 144 -118 1511 238 81 25 chr13 102225534 102225967 -17518931 - MLT1C LTR MaLR 0 467 11 498 313 56 23 chr13 102226268 102226482 -17518416 - MIR SINE MIR -34 228 8 2110 106 7 36 chr13 102227235 102227537 -17517361 + AluSq SINE Alu 1 293 -20 258 259 0 0 chr13 102227787 102227845 -17517053 - L2 LINE L2 -2 3270 3213 330 221 61 33 chr13 102229365 102229449 -17515449 + L1M1 LINE L1 11 91 -7395 1467 119 0 41 chr13 102229449 102229692 -17515206 + L1MA2 LINE L1 6072 6304 0 330 221 61 33 chr13 102229692 102229726 -17515172 + L1M1 LINE L1 91 1645 -5841 295 282 36 27 chr13 102231181 102231291 -17513607 + MIR SINE MIR 116 226 -36 275 260 234 26 chr13 102231932 102232086 -17512812 - MIR SINE MIR -11 251 66 625 300 52 32 chr13 102232451 102232794 -17512104 + LTR16B LTR ERVL 115 464 0 1563 224 138 28 chr13 102234290 102234771 -17510127 - MER69 DNA AcHobo -83 2443 1896 2187 131 3 0 chr13 102234771 102235077 -17509821 - AluSg1 SINE Alu -2 307 1 1563 224 138 28 chr13 102235077 102235132 -17509766 - MER69 DNA AcHobo -630 1896 1848 1052 254 15 77 chr13 102235438 102235776 -17509122 - MER69 DNA AcHobo -2209 317 1 182 143 0 0 chr13 102235776 102235811 -17509087 + L2 LINE L2 3279 3313 0 2876 3 0 6 chr13 102236294 102236607 -17508291 - AluYa5 SINE Alu 0 311 1 3106 158 49 0 chr13 102236838 102237371 -17507527 - MER89 LTR ERV1 0 559 1 21 0 0 0 chr13 102237617 102237638 -17507260 + AT_rich Low_complexity Low_complexity 1 21 0 439 302 72 57 chr13 102239055 102239373 -17505525 + L2 LINE L2 2485 2807 -507 1010 254 27 12 chr13 102239419 102239675 -17505223 + MLT1H LTR MaLR 18 277 -272 461 261 106 21 chr13 102239830 102240018 -17504880 + MLT1H LTR MaLR 346 549 0 243 321 32 70 chr13 102240067 102240254 -17504644 + L2 LINE L2 2879 3058 -214 779 298 48 8 chr13 102240306 102240558 -17504340 + MIR SINE MIR 1 262 0 3081 102 37 11 chr13 102240638 102241071 -17503827 - MLT2A1 LTR ERVL 0 444 1 41141 72 11 2 chr13 102241071 102246213 -17498685 - HERVL-A1 LTR ERVL 0 5654 465 12972 122 35 29 chr13 102246219 102249229 -17495669 + L1P3 LINE L1 6 3096 -3365 2091 59 0 0 chr13 102249231 102249485 -17495413 - MLT2A1 LTR ERVL -190 254 1 921 157 25 86 chr13 102249519 102249717 -17495181 - MLT1A2 LTR MaLR 0 374 189 271 127 18 18 chr13 102249795 102249850 -17495048 + L1MEc LINE L1 645 699 -5697 3599 298 64 41 chr13 102249976 102251642 -17493256 + L1ME2 LINE L1 2780 4482 -1664 2542 237 66 10 chr13 102251652 102252347 -17492551 + L1ME2 LINE L1 5342 6075 -89 2177 119 7 0 chr13 102252367 102252669 -17492229 + AluSg SINE Alu 1 304 -6 1493 136 27 12 chr13 102252744 102253002 -17491896 + Tigger2 DNA MER2_type 2 263 -2455 530 198 10 0 chr13 102253003 102253099 -17491799 + AluJ/FLAM SINE Alu 3 99 -213 18998 44 3 0 chr13 102253204 102255564 -17489334 + L1P LINE L1 3064 5428 -727 8038 28 6 4 chr13 102255664 102257273 -17487625 + L1PA3 LINE L1 4545 6155 0 2743 145 9 20 chr13 102257581 102258029 -17486869 - MER65A LTR ERV1 0 445 3 306 294 105 35 chr13 102258081 102258224 -17486674 + MIR3 SINE MIR 10 162 -46 186 250 146 0 chr13 102259205 102259253 -17485645 + L2 LINE L2 3210 3264 -8 2201 113 24 39 chr13 102260286 102260667 -17484231 - THE1C LTR MaLR 0 375 1 225 210 0 0 chr13 102262442 102262504 -17482394 + (TG)n Simple_repeat Simple_repeat 1 62 0 2338 144 60 22 chr13 102262575 102262991 -17481907 - MSTB1 LTR MaLR 0 432 1 918 179 95 0 chr13 102263052 102263231 -17481667 - MLT1B LTR MaLR -4 386 191 222 192 0 0 chr13 102263240 102263292 -17481606 + GA-rich Low_complexity Low_complexity 1 52 0 603 206 78 7 chr13 102263295 102263436 -17481462 - MLT1B LTR MaLR -217 173 23 1224 200 193 0 chr13 102263957 102264252 -17480646 + MLT2C1 LTR ERVL 1 352 -45 183 156 0 0 chr13 102264297 102264329 -17480569 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 284 238 25 25 chr13 102264834 102264914 -17479984 + MER5B DNA MER1_type 1 80 -98 557 288 100 25 chr13 102265733 102266094 -17478804 + L1M4 LINE L1 4637 5024 -1122 269 302 155 0 chr13 102266118 102266234 -17478664 - MIR SINE MIR -69 193 60 219 214 0 0 chr13 102266358 102266400 -17478498 + (CCTA)n Simple_repeat Simple_repeat 4 45 0 812 283 44 0 chr13 102266897 102267102 -17477796 - MLT1J LTR MaLR -58 453 240 285 384 53 11 chr13 102267489 102267728 -17477170 - L2 LINE L2 -335 2978 2733 5400 117 12 7 chr13 102267761 102269037 -17475861 + L1PA12 LINE L1 4724 6001 -167 552 203 17 0 chr13 102269152 102269270 -17475628 + Tigger2 DNA MER2_type 638 757 -1961 1270 181 24 36 chr13 102269325 102269381 -17475517 + Tigger2 DNA MER2_type 2462 2517 -201 1805 114 88 100 chr13 102269381 102269722 -17475176 - MER1B DNA MER1_type 0 337 1 1270 181 24 36 chr13 102269722 102269914 -17474984 + Tigger2 DNA MER2_type 2517 2707 -11 198 0 0 0 chr13 102270148 102270170 -17474728 + (ACTG)n Simple_repeat Simple_repeat 1 22 0 6131 128 19 28 chr13 102270209 102271222 -17473676 + L1PA6 LINE L1 11 1014 -5132 2565 106 54 7 chr13 102271223 102271630 -17473268 + L1PA6 LINE L1 2611 3036 -3110 13687 64 10 9 chr13 102271784 102274248 -17470650 + L1PA6 LINE L1 3681 6154 0 2188 117 3 0 chr13 102274584 102274884 -17470014 - AluSx SINE Alu -11 301 1 378 119 0 0 chr13 102274956 102275015 -17469883 + L1PA6 LINE L1 6093 6151 -3 18047 55 6 3 chr13 102275495 102277722 -17467176 + L1P LINE L1 9 2242 -3904 21 0 0 0 chr13 102278275 102278296 -17466602 + AT_rich Low_complexity Low_complexity 1 21 0 2480 81 0 0 chr13 102278305 102278603 -17466295 + AluSg SINE Alu 1 298 -12 222 228 20 30 chr13 102279598 102279699 -17465199 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 36 0 0 chr13 102279855 102279883 -17465015 + AT_rich Low_complexity Low_complexity 1 28 0 1044 78 0 21 chr13 102279927 102280069 -17464829 - AluSp/q SINE Alu -8 305 167 690 299 48 34 chr13 102280076 102280517 -17464381 - L1MC/D LINE L1 -748 5678 5494 198 0 0 0 chr13 102280530 102280552 -17464346 + (A)n Simple_repeat Simple_repeat 1 22 0 372 229 69 92 chr13 102280609 102280827 -17464071 - L1MC/D LINE L1 -1457 4969 4757 398 344 68 24 chr13 102280961 102281255 -17463643 + L2 LINE L2 2614 2920 -394 551 294 99 18 chr13 102282792 102283013 -17461885 + L2 LINE L2 3045 3283 -30 1857 102 4 0 chr13 102283159 102283404 -17461494 - AluSx SINE Alu -22 290 45 252 313 73 13 chr13 102283562 102283712 -17461186 - L1MC/D LINE L1 -1957 4469 4311 318 224 228 15 chr13 102283742 102284014 -17460884 - L1MC/D LINE L1 -2769 3657 3328 3931 177 26 1 chr13 102284242 102284960 -17459938 - L1MB7 LINE L1 -16 6168 5433 627 261 101 32 chr13 102285260 102285644 -17459254 - L1MEd LINE L1 -4860 1545 1169 472 19 0 0 chr13 102285880 102285932 -17458966 + LTR7 LTR ERV1 399 450 0 21640 85 8 14 chr13 102285932 102288941 -17455957 + HERVH LTR ERV1 1 2992 -4721 5975 81 25 9 chr13 102288927 102289768 -17455130 + HERVH LTR ERV1 3140 3993 -3720 * 4567 134 0 1 chr13 102289770 102290433 -17454465 + HERVH LTR ERV1 4488 5149 -2564 1357 129 23 9 chr13 102290434 102290651 -17454247 + HERVH LTR ERV1 5600 5819 -1894 * 2352 111 48 13 chr13 102290649 102291028 -17453870 + HERVH LTR ERV1 7322 7713 0 2792 82 122 5 chr13 102291028 102291431 -17453467 + LTR7 LTR ERV1 1 450 0 453 151 209 0 chr13 102291436 102291522 -17453376 - L1MEd LINE L1 -6304 122 19 226 335 257 0 chr13 102293029 102293181 -17451717 - MIR SINE MIR -5 257 67 287 207 122 85 chr13 102293313 102293395 -17451503 - MER2 DNA MER2_type -251 94 10 228 368 9 9 chr13 102293617 102293723 -17451175 + MIR SINE MIR 36 141 -67 3355 106 29 10 chr13 102294129 102294621 -17450277 - LTR9B LTR ERV1 -143 501 1 2922 126 11 21 chr13 102294991 102295427 -17449471 - MSTB1 LTR MaLR 0 432 1 3024 71 95 2 chr13 102295639 102296049 -17448849 - LTR7 LTR ERV1 -2 448 1 584 266 11 65 chr13 102296122 102296306 -17448592 - MER5B DNA MER1_type -1 177 4 599 208 161 7 chr13 102296307 102296456 -17448442 + MER5A DNA MER1_type 12 183 -6 545 313 16 11 chr13 102297491 102297673 -17447225 + MIR SINE MIR 74 256 -6 195 276 35 58 chr13 102297766 102297853 -17447045 - L3 LINE CR1 -261 1316 1232 284 331 95 0 chr13 102298101 102298270 -17446628 - L3 LINE CR1 -730 847 663 425 250 35 9 chr13 102298375 102298486 -17446412 + MER112 DNA MER1_type 8 121 -139 1918 172 53 33 chr13 102298486 102299027 -17445871 - MLT2A2 LTR ERVL -2 552 1 410 282 24 0 chr13 102299028 102299152 -17445746 + MER112 DNA MER1_type 133 259 -1 1497 215 149 49 chr13 102299665 102300135 -17444763 + LTR40a LTR ERVL 1 517 -2 1126 157 33 5 chr13 102300249 102300459 -17444439 + MSTA LTR MaLR 1 216 -212 233 210 59 67 chr13 102300656 102300775 -17444123 - MIR SINE MIR -50 212 95 303 334 174 29 chr13 102301138 102301449 -17443449 - L3b LINE CR1 -120 1463 1108 910 217 4 48 chr13 102301924 102301992 -17442906 - LTR37A LTR ERV1 0 426 357 2651 91 3 6 chr13 102301992 102302342 -17442556 + L1PA13 LINE L1 5815 6163 0 910 217 4 48 chr13 102302342 102302522 -17442376 - LTR37A LTR ERV1 -69 357 189 251 362 14 22 chr13 102304211 102304349 -17440549 - MLT1K LTR MaLR -240 348 212 530 339 81 58 chr13 102305295 102305533 -17439365 - L1MCa LINE L1 -4935 1481 1250 382 83 17 0 chr13 102305533 102305593 -17439305 - L1MB4 LINE L1 -7 6173 6113 530 339 81 58 chr13 102305593 102305938 -17438960 - L1MCa LINE L1 -5166 1250 885 286 308 77 0 chr13 102306057 102306148 -17438750 - MIR SINE MIR -119 143 46 6484 87 11 9 chr13 102306157 102307353 -17437545 - L1PA10 LINE L1 0 6168 4963 207 309 103 0 chr13 102307536 102307604 -17437294 + L2 LINE L2 3231 3305 -8 2975 109 57 0 chr13 102308431 102308836 -17436062 - MSTA LTR MaLR 0 428 1 329 286 76 0 chr13 102309066 102309237 -17435661 - L1ME4a LINE L1 -195 5926 5743 399 347 39 72 chr13 102310083 102310417 -17434481 - L2 LINE L2 -7 3265 2943 * 544 309 34 6 chr13 102310413 102310588 -17434310 - MIR SINE MIR 0 262 83 519 295 36 48 chr13 102311906 102312323 -17432575 + L1ME4a LINE L1 5708 6119 -2 437 301 133 35 chr13 102312334 102312620 -17432278 + MARNA DNA Mariner 76 389 -197 917 199 64 147 chr13 102312630 102313038 -17431860 - MLT1A2 LTR MaLR 0 374 1 232 281 44 61 chr13 102314079 102314193 -17430705 + L2 LINE L2 3160 3271 -1 212 266 94 70 chr13 102314301 102314429 -17430469 - MIR3 SINE MIR -65 143 13 330 231 231 0 chr13 102314778 102314912 -17429986 + L2 LINE L2 2893 3057 -215 2376 229 23 60 chr13 102315200 102315550 -17429348 - L1MCa LINE L1 -5297 759 510 192 97 0 0 chr13 102315550 102315581 -17429317 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2376 229 23 60 chr13 102315581 102315954 -17428944 - L1MCa LINE L1 -5546 510 125 385 125 78 0 chr13 102315956 102316020 -17428878 + LTR7 LTR ERV1 1 69 -381 2268 132 34 24 chr13 102316145 102316393 -17428505 + MSTA LTR MaLR 45 300 -128 2948 98 0 3 chr13 102316393 102316769 -17428129 - THE1C LTR MaLR 0 375 1 2268 132 34 24 chr13 102316769 102316900 -17427998 + MSTA LTR MaLR 300 428 0 297 298 136 53 chr13 102317027 102317399 -17427499 - L2 LINE L2 -143 3170 2774 27 0 0 0 chr13 102319331 102319358 -17425540 + AT_rich Low_complexity Low_complexity 1 27 0 608 211 95 32 chr13 102319400 102319590 -17425308 + MIR SINE MIR 47 248 -14 281 204 45 101 chr13 102320246 102320335 -17424563 + MIR SINE MIR 101 183 -62 212 301 54 32 chr13 102320862 102320955 -17423943 - L2 LINE L2 -225 3047 2953 289 268 155 28 chr13 102320955 102321097 -17423801 + MIR SINE MIR 32 191 -71 424 344 70 12 chr13 102321582 102321823 -17423075 - L2 LINE L2 -461 2853 2599 192 300 115 46 chr13 102321997 102322127 -17422771 - L2 LINE L2 -7 3306 3168 1969 149 13 0 chr13 102322239 102322547 -17422351 - AluSx SINE Alu 0 312 1 402 265 225 10 chr13 102323013 102323213 -17421685 - MIR SINE MIR 0 262 20 1250 167 19 14 chr13 102323225 102323440 -17421458 - MER20 DNA MER1_type -2 217 2 742 251 56 30 chr13 102323573 102323991 -17420907 - MLT1J LTR MaLR -28 483 5 2318 144 71 35 chr13 102324111 102324562 -17420336 + MLT1C LTR MaLR 1 467 0 741 207 136 0 chr13 102324908 102325074 -17419824 + MER63 DNA MER1_type 27 167 -894 2613 145 50 82 chr13 102325074 102325169 -17419729 - MLT2B1 LTR ERVL 0 520 424 614 31 41 10 chr13 102325169 102325266 -17419632 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 2613 145 50 82 chr13 102325266 102325707 -17419191 - MLT2B1 LTR ERVL -96 424 1 741 207 136 0 chr13 102325707 102325866 -17419032 + MER63 DNA MER1_type 167 439 -622 2177 197 8 0 chr13 102325884 102326274 -17418624 + MER63 DNA MER1_type 669 1061 0 21 57 0 0 chr13 102326446 102326481 -17418417 + AT_rich Low_complexity Low_complexity 1 35 0 43789 31 21 2 chr13 102326482 102332514 -17412384 - L1HS LINE L1 -2 6153 1 307 278 222 0 chr13 102332562 102332652 -17412246 + L2 LINE L2 3149 3258 -14 1069 202 44 15 chr13 102335615 102335880 -17409018 - MLT1A1 LTR MaLR -88 277 2 2317 92 7 0 chr13 102336052 102336344 -17408554 - AluSq SINE Alu -19 294 1 207 0 0 0 chr13 102336594 102336617 -17408281 + (A)n Simple_repeat Simple_repeat 1 23 0 186 255 21 21 chr13 102336769 102336816 -17408082 - MIR SINE MIR -146 62 16 263 210 16 16 chr13 102337163 102337225 -17407673 + L1MD2 LINE L1 6212 6273 -86 319 276 124 9 chr13 102337439 102337544 -17407354 + MIR SINE MIR 24 140 -68 2766 145 29 0 chr13 102337919 102338333 -17406565 + MSTB LTR MaLR 1 426 0 237 196 43 0 chr13 102338559 102338605 -17406293 + L1MC/D LINE L1 5595 5642 -702 894 229 16 0 chr13 102338758 102338941 -17405957 + MER5A DNA MER1_type 3 188 -1 424 202 0 32 chr13 102338992 102339086 -17405812 - MLT2E LTR ERVL -506 122 32 2622 152 14 20 chr13 102339360 102339409 -17405489 - L1MC1 LINE L1 0 6333 6285 2062 122 0 34 chr13 102339409 102339730 -17405168 - AluSx SINE Alu -2 310 1 2622 152 14 20 chr13 102339730 102340120 -17404778 - L1MC1 LINE L1 -48 6285 5897 8515 190 15 8 chr13 102340221 102342400 -17402498 - L1P5 LINE L1 -492 5659 3470 545 313 16 11 chr13 102343447 102343629 -17401269 + MIR SINE MIR 74 256 -6 195 276 35 58 chr13 102343722 102343809 -17401089 - L3 LINE CR1 -261 1316 1232 240 324 103 0 chr13 102344057 102344202 -17400696 - L3 LINE CR1 -730 847 688 410 259 35 9 chr13 102344331 102344442 -17400456 + MER112 DNA MER1_type 8 121 -139 2433 103 6 3 chr13 102344442 102344772 -17400126 - MLT2A2 LTR ERVL -2 451 121 17750 38 2 1 chr13 102345076 102347871 -17397027 - L1PA3 LINE L1 -98 6057 3259 3485 131 13 0 chr13 102347971 102348499 -17396399 - L1MC1 LINE L1 -366 5967 5433 33 25 0 0 chr13 102348592 102348632 -17396266 + AT_rich Low_complexity Low_complexity 1 40 0 521 181 52 17 chr13 102349369 102349485 -17395413 + L1M1 LINE L1 16 135 -7430 585 172 35 24 chr13 102349763 102349932 -17394966 - Charlie5 DNA MER1_type -5 2607 2437 244 317 117 8 chr13 102349955 102350075 -17394823 - L2 LINE L2 -14 3299 3167 633 251 116 45 chr13 102350162 102350232 -17394666 + LTR33 LTR ERVL 1 65 -456 2165 221 121 12 chr13 102350232 102350721 -17394177 + MLT1F LTR MaLR 1 542 0 633 251 116 45 chr13 102350721 102351121 -17393777 + LTR33 LTR ERVL 65 521 0 202 235 103 29 chr13 102351273 102351341 -17393557 + MER91C DNA MER1_type 31 103 -37 981 144 0 0 chr13 102351527 102351659 -17393239 - FLAM_C SINE Alu -1 132 1 2147 116 20 0 chr13 102351667 102351961 -17392937 - AluSx SINE Alu -8 304 5 422 241 136 43 chr13 102353228 102353390 -17391508 - MLT1I LTR MaLR -2 407 231 451 282 56 84 chr13 102354210 102354648 -17390250 + L1M4 LINE L1 4873 5299 -847 1599 158 82 24 chr13 102354648 102354939 -17389959 + AluSx SINE Alu 1 308 -4 451 282 56 84 chr13 102354939 102354983 -17389915 + L1M4 LINE L1 5299 5343 -803 1326 296 80 11 chr13 102355035 102355498 -17389400 + L1MEc LINE L1 142 636 -5760 940 160 138 5 chr13 102355507 102355695 -17389203 + MER20 DNA MER1_type 7 219 0 2689 269 49 46 chr13 102355696 102356041 -17388857 + L1MEc LINE L1 633 976 -5420 1691 182 19 10 chr13 102356041 102356348 -17388550 + AluJo SINE Alu 3 312 0 2689 269 49 46 chr13 102356348 102356366 -17388532 + L1MEc LINE L1 976 992 -5404 1744 132 12 0 chr13 102356366 102356616 -17388282 + AluSx SINE Alu 49 301 -11 2689 269 49 46 chr13 102356616 102357416 -17387482 + L1MEc LINE L1 992 1800 -4596 468 301 9 0 chr13 102357871 102357984 -17386914 - L2 LINE L2 0 3313 3200 5769 93 38 8 chr13 102358366 102359374 -17385524 + L1PA10 LINE L1 5042 6082 -86 198 256 233 11 chr13 102359461 102359551 -17385347 - MIR SINE MIR -68 140 31 506 135 11 34 chr13 102359569 102359658 -17385240 + L1PA11 LINE L1 6087 6173 -1 287 282 194 0 chr13 102360033 102360157 -17384741 + MIR SINE MIR 65 212 -50 517 208 185 46 chr13 102360216 102360389 -17384509 - MIR SINE MIR 0 262 66 205 244 233 11 chr13 102361091 102361181 -17383717 - MIR SINE MIR -68 140 31 2433 102 87 3 chr13 102361334 102361669 -17383229 - THE1B LTR MaLR 0 364 2 1674 173 3 3 chr13 102362134 102362429 -17382469 - AluJb SINE Alu -17 295 1 195 280 50 104 chr13 102363430 102363612 -17381286 - MIR3 SINE MIR -18 190 19 201 158 0 0 chr13 102364287 102364325 -17380573 + A-rich Low_complexity Low_complexity 1 38 0 2145 94 3 79 chr13 102364327 102364655 -17380243 + AluSp SINE Alu 1 303 -10 433 265 74 77 chr13 102364791 102365089 -17379809 + L1ME LINE L1 5523 5819 -302 23 0 0 0 chr13 102365138 102365161 -17379737 + AT_rich Low_complexity Low_complexity 1 23 0 1578 184 18 7 chr13 102365174 102365451 -17379447 + AluJb SINE Alu 6 285 -27 6706 169 35 58 chr13 102365514 102366564 -17378334 + L1MC3 LINE L1 6181 7181 -604 1736 162 41 10 chr13 102366564 102366854 -17378044 + AluJb SINE Alu 10 308 -4 6706 169 35 58 chr13 102366854 102367438 -17377460 + L1MC3 LINE L1 7181 7777 -8 250 143 0 0 chr13 102368054 102368089 -17376809 - L2 LINE L2 -16 3256 3222 1000 50 0 8 chr13 102368565 102368685 -17376213 + AluSq SINE Alu 97 215 -98 1755 173 30 43 chr13 102369151 102369521 -17375377 - MLT1A1 LTR MaLR 0 365 1 2033 143 0 3 chr13 102370253 102370576 -17374322 + AluSq SINE Alu 1 322 0 2363 219 46 4 chr13 102371319 102371863 -17373035 - MLT1F1 LTR MaLR 0 567 1 25 0 0 0 chr13 102372020 102372045 -17372853 + AT_rich Low_complexity Low_complexity 1 25 0 4923 168 23 8 chr13 102372418 102373323 -17371575 + MER49 LTR ERV1 5 923 0 274 167 0 0 chr13 102374800 102374842 -17370056 + 5S rRNA rRNA 1 42 -79 2370 57 0 0 chr13 102374856 102375137 -17369761 + AluY SINE Alu 1 281 -30 268 24 49 0 chr13 102375140 102375181 -17369717 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 582 290 60 32 chr13 102375224 102375572 -17369326 + HAL1b LINE L1 225 582 -766 26 30 0 0 chr13 102375671 102375704 -17369194 + AT_rich Low_complexity Low_complexity 1 33 0 327 271 31 21 chr13 102375711 102375807 -17369091 + HAL1b LINE L1 758 854 -494 548 250 31 0 chr13 102375862 102376022 -17368876 + L1M4 LINE L1 2821 2985 -3161 1935 174 3 7 chr13 102376105 102376415 -17368483 + AluJb SINE Alu 3 311 -1 33 0 0 0 chr13 102376668 102376701 -17368197 + AT_rich Low_complexity Low_complexity 1 33 0 392 265 30 79 chr13 102377814 102378228 -17366670 + MLT1I LTR MaLR 47 593 -2 441 283 77 72 chr13 102378324 102379063 -17365835 + L1M4 LINE L1 3359 4101 -2045 309 301 17 35 chr13 102379100 102379319 -17365579 - L1ME LINE L1 -467 5703 5491 225 194 376 0 chr13 102379373 102379466 -17365432 - MIR SINE MIR -6 256 129 718 231 80 62 chr13 102379695 102380032 -17364866 + MER57A LTR ERV1 60 403 0 442 264 61 57 chr13 102380035 102380281 -17364617 + MER57A-int LTR ERV1 3 249 -7288 1009 236 58 19 chr13 102380555 102380966 -17363932 + MER57A-int LTR ERV1 1029 1455 -3481 2239 131 0 3 chr13 102381008 102381320 -17363578 + AluSx SINE Alu 1 311 -1 411 180 90 30 chr13 102381400 102381500 -17363398 + MER34 LTR ERV1 132 237 -305 271 130 111 0 chr13 102381502 102381556 -17363342 + MER34 LTR ERV1 478 537 -5 3118 214 89 69 chr13 102381569 102383403 -17361495 + MER57A-int LTR ERV1 1874 5591 -1500 313 302 22 58 chr13 102383400 102383625 -17361273 + MER57A-int LTR ERV1 6457 6673 -864 * 417 320 0 0 chr13 102383531 102383678 -17361220 + MER70-int LTR ERVL 4538 4684 -339 342 45 0 0 chr13 102384312 102384356 -17360542 + (TA)n Simple_repeat Simple_repeat 1 44 0 1006 292 8 35 chr13 102384859 102385256 -17359642 + MER57A-int LTR ERV1 6759 7144 -393 498 243 53 116 chr13 102385256 102385661 -17359237 + MER57A LTR ERV1 1 385 -18 2166 116 7 0 chr13 102385661 102385953 -17358945 - AluSx SINE Alu -18 294 1 498 243 53 116 chr13 102385953 102385971 -17358927 + MER57A LTR ERV1 385 403 0 665 203 0 70 chr13 102386113 102386256 -17358642 - FLAM_A SINE Alu 0 133 1 2815 189 35 71 chr13 102386420 102387128 -17357770 - MER44D DNA MER2_type 0 605 51 531 212 9 0 chr13 102387130 102387243 -17357655 - MER44D DNA MER2_type -588 117 4 430 326 16 0 chr13 102387723 102387852 -17357046 - L2 LINE L2 -1 3271 3141 2841 226 74 11 chr13 102388341 102389438 -17355460 + L1ME1 LINE L1 4986 6161 -5 269 282 0 14 chr13 102389648 102389719 -17355179 + L2 LINE L2 3238 3307 -6 384 22 0 0 chr13 102390558 102390603 -17354295 + (TG)n Simple_repeat Simple_repeat 2 46 0 219 294 229 9 chr13 102391242 102391351 -17353547 + L2 LINE L2 3177 3309 -4 220 318 0 0 chr13 102391966 102392029 -17352869 + (TA)n Simple_repeat Simple_repeat 2 64 0 195 271 21 0 chr13 102392429 102392477 -17352421 - L2 LINE L2 -1238 2076 2028 254 333 159 32 chr13 102392797 102392923 -17351975 - MIR3 SINE MIR -49 159 18 2321 143 50 19 chr13 102392923 102393163 -17351735 - Tigger2a DNA MER2_type -2274 434 174 3230 95 23 0 chr13 102393163 102393606 -17351292 - MLT2A2 LTR ERVL 0 453 1 2321 143 50 19 chr13 102393606 102393786 -17351112 - Tigger2a DNA MER2_type -2534 174 1 878 180 10 36 chr13 102393791 102393985 -17350913 + MER5A DNA MER1_type 1 189 0 338 186 57 0 chr13 102394090 102394160 -17350738 - MER58 DNA MER1_type -96 245 172 2190 102 0 7 chr13 102394516 102394810 -17350088 - AluSx SINE Alu -20 292 1 384 255 0 39 chr13 102395040 102395142 -17349756 - MIR3 SINE MIR -11 197 100 240 294 56 16 chr13 102395212 102395338 -17349560 + MLT1I LTR MaLR 75 205 -204 267 260 0 13 chr13 102395456 102395533 -17349365 + MLT1I LTR MaLR 334 409 0 379 241 0 0 chr13 102395534 102395612 -17349286 - MIR SINE MIR -102 106 29 2142 134 0 0 chr13 102396028 102396320 -17348578 - AluSx SINE Alu -20 292 1 202 322 34 0 chr13 102397302 102397361 -17347537 - L2 LINE L2 -27 3286 3226 40615 36 21 1 chr13 102397403 102403442 -17341456 + L1PA3 LINE L1 2 6164 0 220 355 28 28 chr13 102403911 102404018 -17340880 - L2 LINE L2 -15 3257 3151 306 0 0 0 chr13 102404363 102404397 -17340501 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 328 112 24 chr13 102404795 102404920 -17339978 - L3 LINE CR1 -1205 372 237 220 333 71 43 chr13 102405647 102405788 -17339110 - L2 LINE L2 -6 3266 3122 188 294 15 15 chr13 102405970 102406038 -17338860 + L2 LINE L2 3017 3084 -188 235 241 96 0 chr13 102406617 102406700 -17338198 - MIR SINE MIR 0 262 172 481 259 21 0 chr13 102406700 102406843 -17338055 - HAL1 LINE L1 -2344 163 18 378 291 0 0 chr13 102406886 102406965 -17337933 + MIR SINE MIR 7 85 -177 1234 191 84 148 chr13 102406965 102407333 -17337565 + HAL1 LINE L1 933 1224 -1283 1741 157 23 17 chr13 102407333 102407633 -17337265 + AluJb SINE Alu 1 302 -10 1234 191 84 148 chr13 102407633 102408062 -17336836 + HAL1 LINE L1 1224 1679 -828 1414 114 85 12 chr13 102408067 102408313 -17336585 + MER39B LTR ERV1 5 268 -385 891 132 0 0 chr13 102408323 102408452 -17336446 + FLAM_C SINE Alu 11 139 -4 516 32 0 0 chr13 102408472 102408534 -17336364 + (CA)n Simple_repeat Simple_repeat 1 62 0 198 0 0 0 chr13 102409163 102409185 -17335713 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 10980 27 2 0 chr13 102409185 102411243 -17333655 - L1PA3 LINE L1 -13 6142 4080 487 270 166 16 chr13 102411362 102411681 -17333217 - L2 LINE L2 -1227 2087 1721 3478 79 0 5 chr13 102412093 102412538 -17332360 - MLT2A1 LTR ERVL -1 443 1 29131 71 24 1 chr13 102412540 102418038 -17326860 - HERVL-A1-A1 LTR ERVL -2 5652 1 3572 69 0 0 chr13 102418048 102418482 -17326416 - MLT2A1 LTR ERVL -10 434 1 498 345 110 7 chr13 102418649 102418950 -17325948 - L2 LINE L2 -38 3275 2944 4478 97 22 45 chr13 102418973 102420051 -17324847 + SVA Other Other 9 1386 0 14137 175 15 9 chr13 102420219 102423974 -17320924 - L1PB1 LINE L1 -3 6148 2375 300 275 12 0 chr13 102424975 102425055 -17319843 + GA-rich Low_complexity Low_complexity 2 82 0 202 267 22 0 chr13 102425441 102425486 -17319412 - MER91A DNA MER1_type -35 161 116 2203 186 17 3 chr13 102426822 102427182 -17317716 + MLT1A1 LTR MaLR 1 365 0 6450 188 117 67 chr13 102427182 102428834 -17316064 + MLT1A1-int LTR MaLR 1 1735 0 1755 218 17 20 chr13 102428840 102429194 -17315704 + MLT1A1 LTR MaLR 13 365 0 423 224 231 22 chr13 102429209 102429343 -17315555 + MLT1H LTR MaLR 382 543 -6 2846 162 24 7 chr13 102429736 102430193 -17314705 + MLT1C LTR MaLR 3 467 0 1047 245 34 46 chr13 102431257 102431580 -17313318 + L1MEc LINE L1 29 347 -6049 722 148 0 0 chr13 102431623 102431724 -17313174 - AluJb SINE Alu -16 296 196 3150 246 83 1 chr13 102431730 102432669 -17312229 - L1MCc LINE L1 -1250 5691 4676 242 235 20 0 chr13 102433103 102433154 -17311744 + MER70B LTR ERVL 454 505 -73 2165 241 81 9 chr13 102433187 102433830 -17311068 - L1MCc LINE L1 -2275 4666 3978 1342 188 29 153 chr13 102433849 102434339 -17310559 - LTR47A LTR ERVL -20 432 4 2945 227 58 63 chr13 102434339 102435246 -17309652 - L1MCc LINE L1 -2968 3973 3093 1837 168 3 14 chr13 102435246 102435543 -17309355 - AluSx SINE Alu -18 294 1 2945 227 58 63 chr13 102435543 102435929 -17308969 - L1MCc LINE L1 -3848 3093 2707 1973 168 12 3 chr13 102435929 102436268 -17308630 - MER47A DNA MER2_type 0 366 25 3012 135 17 2 chr13 102436269 102436691 -17308207 - MSTA LTR MaLR 0 428 1 6282 180 14 1 chr13 102436691 102437742 -17307156 - MSTA-int LTR MaLR 0 1651 587 7274 76 175 3 chr13 102437746 102438826 -17306072 - MER11A LTR ERVK 0 1266 1 3682 147 2 3 chr13 102438826 102439396 -17305502 - MSTA-int LTR MaLR -1081 570 2 2436 132 126 0 chr13 102439397 102439777 -17305121 - MSTA LTR MaLR 0 428 1 2951 248 36 52 chr13 102439802 102440528 -17304370 - L1MCc LINE L1 -4425 2697 1782 270 0 0 0 chr13 102440528 102440558 -17304340 + (CA)n Simple_repeat Simple_repeat 1 30 0 2951 248 36 52 chr13 102440558 102441013 -17303885 - L1MCc LINE L1 -5340 1782 1322 286 181 97 42 chr13 102441583 102441655 -17303243 - MER69 DNA AcHobo -1 2525 2450 491 252 107 31 chr13 102441675 102441834 -17303064 + L2 LINE L2 3143 3313 0 265 242 15 0 chr13 102441836 102441902 -17302996 + L3 LINE CR1 1510 1576 -1 573 106 21 0 chr13 102443269 102443363 -17301535 - L1MA9 LINE L1 -8 6304 6209 25 0 0 0 chr13 102444042 102444067 -17300831 + AT_rich Low_complexity Low_complexity 1 25 0 39 50 0 0 chr13 102444465 102444525 -17300373 + AT_rich Low_complexity Low_complexity 1 60 0 604 272 50 22 chr13 102444778 102444958 -17299940 + MIR3 SINE MIR 19 203 -5 2140 106 13 10 chr13 102445124 102445436 -17299462 + AluSp SINE Alu 1 313 0 222 192 0 0 chr13 102445452 102445504 -17299394 + T-rich Low_complexity Low_complexity 1 52 0 2342 201 60 14 chr13 102445784 102446296 -17298602 + MLT1F LTR MaLR 7 542 0 291 193 70 0 chr13 102447391 102447448 -17297450 - LTR52 LTR ERVL -2 419 359 2285 130 36 33 chr13 102447448 102447810 -17297088 + THE1B LTR MaLR 1 363 -1 6992 160 24 8 chr13 102447901 102450144 -17294754 + L1PA16 LINE L1 3892 6166 0 392 292 115 0 chr13 102450160 102450290 -17294608 + L2 LINE L2 3118 3262 -10 1467 51 17 0 chr13 102450374 102450551 -17294347 + L1PA4 LINE L1 5976 6155 0 512 165 0 96 chr13 102450778 102450893 -17294005 - L2 LINE L2 -10 3303 3200 521 338 74 9 chr13 102450939 102451170 -17293728 - L2 LINE L2 -239 3074 2829 204 313 50 30 chr13 102451336 102451435 -17293463 - MIR SINE MIR -50 212 112 1989 119 0 70 chr13 102451437 102451749 -17293149 + AluSx SINE Alu 1 290 -22 38 0 0 0 chr13 102451749 102451787 -17293111 + AT_rich Low_complexity Low_complexity 1 38 0 291 320 62 10 chr13 102451805 102451902 -17292996 - MIR SINE MIR -141 121 20 189 229 0 0 chr13 102451938 102451973 -17292925 + MIR SINE MIR 217 251 -11 239 174 16 24 chr13 102452118 102452176 -17292722 + MIR SINE MIR 54 115 -93 367 165 59 24 chr13 102452762 102452832 -17292066 + LTR16A1 LTR ERVL 59 125 -332 4320 126 14 87 chr13 102452832 102453112 -17291786 + L1MA8 LINE L1 5509 5808 -483 1838 124 0 35 chr13 102453112 102453394 -17291504 + AluSx SINE Alu 11 282 -30 261 0 0 0 chr13 102453397 102453426 -17291472 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 4320 126 14 87 chr13 102453426 102453985 -17290913 + L1MA8 LINE L1 5810 6291 0 367 165 59 24 chr13 102453985 102453999 -17290899 + LTR16A1 LTR ERVL 125 146 -311 23 0 0 0 chr13 102454492 102454515 -17290383 + AT_rich Low_complexity Low_complexity 1 23 0 2609 164 55 2 chr13 102455309 102455766 -17289132 - Tigger3b DNA MER2_type -750 481 1 3991 244 36 7 chr13 102456028 102457169 -17287729 + L1P LINE L1 2376 3549 -2597 495 33 0 0 chr13 102457269 102457330 -17287568 + (CA)n Simple_repeat Simple_repeat 2 62 0 655 231 109 6 chr13 102457335 102457491 -17287407 + FAM SINE Alu 1 172 -3 2232 149 44 18 chr13 102457495 102457884 -17287014 + MER39B LTR ERV1 255 653 0 374 224 71 0 chr13 102457884 102457982 -17286916 + HAL1 LINE L1 1677 1781 -726 180 176 0 0 chr13 102458155 102458189 -17286709 + (CA)n Simple_repeat Simple_repeat 2 35 0 880 206 112 9 chr13 102458191 102458405 -17286493 - MIR SINE MIR -13 249 14 268 302 29 83 chr13 102458903 102459108 -17285790 + L1ME3A LINE L1 5977 6170 0 654 152 96 0 chr13 102459147 102459272 -17285626 - LTR26B LTR ERV1 -129 402 266 2282 112 37 35 chr13 102459320 102459694 -17285204 - THE1C LTR MaLR 0 375 1 893 236 143 26 chr13 102460745 102461157 -17283741 + LTR1B LTR ERV1 60 1217 -328 1802 176 112 19 chr13 102461439 102461631 -17283267 + MLT1C LTR MaLR 8 181 -286 1672 162 19 23 chr13 102461631 102461939 -17282959 + AluJb SINE Alu 6 312 0 1802 176 112 19 chr13 102461939 102462167 -17282731 + MLT1C LTR MaLR 181 467 0 786 143 15 45 chr13 102462205 102462338 -17282560 + FLAM_C SINE Alu 1 129 -4 1996 103 11 0 chr13 102462929 102463201 -17281697 - AluSx SINE Alu -8 304 30 208 298 0 0 chr13 102463214 102463271 -17281627 + MER5B DNA MER1_type 46 102 -76 826 224 129 113 chr13 102463289 102463784 -17281114 + MER21B LTR ERV1 13 515 -348 4582 156 1 11 chr13 102463787 102464102 -17280796 + MER50 LTR ERV1 1 318 -416 4247 112 39 3 chr13 102464102 102464693 -17280205 - LTR9 LTR ERV1 0 612 1 4582 156 1 11 chr13 102464693 102465095 -17279803 + MER50 LTR ERV1 318 711 -23 781 206 31 101 chr13 102465097 102465142 -17279756 + MER21B LTR ERV1 518 565 -298 3411 121 16 71 chr13 102465142 102465703 -17279195 - LTR26B LTR ERV1 0 531 2 781 206 31 101 chr13 102465703 102465914 -17278984 + MER21B LTR ERV1 565 756 -107 455 232 11 0 chr13 102466053 102466148 -17278750 - MER81 DNA DNA -7 107 12 1040 308 9 3 chr13 102466179 102466513 -17278385 + LTR16B LTR ERVL 129 464 0 1615 154 0 69 chr13 102466529 102466834 -17278064 - AluJo SINE Alu -20 292 9 317 179 15 30 chr13 102466836 102466903 -17277995 + MER5B DNA MER1_type 113 178 0 185 139 23 0 chr13 102467258 102467301 -17277597 + (TG)n Simple_repeat Simple_repeat 2 45 0 404 307 0 0 chr13 102467972 102468112 -17276786 + (CA)n Simple_repeat Simple_repeat 1 140 0 342 297 171 61 chr13 102468392 102468461 -17276437 + L2 LINE L2 1731 1791 -1481 1699 211 42 14 chr13 102468461 102468816 -17276082 + MLT1A1 LTR MaLR 1 365 0 342 297 171 61 chr13 102468816 102469312 -17275586 + L2 LINE L2 1791 2231 -1041 194 0 39 0 chr13 102469312 102469338 -17275560 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 342 297 171 61 chr13 102469338 102469398 -17275500 + L2 LINE L2 2231 2283 -989 1596 237 33 19 chr13 102469398 102469765 -17275133 - MLT1A2 LTR MaLR -1 373 2 342 297 171 61 chr13 102469765 102470432 -17274466 + L2 LINE L2 2283 3178 -94 1156 185 55 121 chr13 102470441 102470669 -17274229 - MLT1A1 LTR MaLR -6 359 162 1715 174 20 10 chr13 102470669 102470973 -17273925 - AluJo SINE Alu -5 307 1 1156 185 55 121 chr13 102470973 102471107 -17273791 - MLT1A1 LTR MaLR -203 162 21 553 247 90 126 chr13 102472394 102472651 -17272247 + L2 LINE L2 2835 3071 -201 2498 179 28 11 chr13 102472651 102473109 -17271789 - MLT1C LTR MaLR -1 466 1 553 247 90 126 chr13 102473109 102473305 -17271593 + L2 LINE L2 3071 3272 0 882 144 38 0 chr13 102474429 102474584 -17270314 + FRAM SINE Alu 16 175 0 315 275 46 0 chr13 102474586 102474695 -17270203 + MIR SINE MIR 141 254 -8 263 246 186 8 chr13 102474702 102474820 -17270078 - MIR SINE MIR -96 166 28 391 292 13 26 chr13 102474869 102475023 -17269875 - L2 LINE L2 0 3313 3162 22 0 0 0 chr13 102475071 102475093 -17269805 + AT_rich Low_complexity Low_complexity 1 22 0 405 206 0 49 chr13 102475105 102475207 -17269691 + L1M4 LINE L1 2 98 -6444 5438 165 22 38 chr13 102475208 102475906 -17268992 - L1MA9 LINE L1 -11 6301 5593 2237 121 0 10 chr13 102475906 102476219 -17268679 - AluSg SINE Alu 0 310 1 5438 165 22 38 chr13 102476219 102476986 -17267912 - L1MA9 LINE L1 -719 5593 4855 3914 226 52 79 chr13 102477015 102478224 -17266674 + L1M4 LINE L1 66 1241 -5301 2559 197 39 65 chr13 102478225 102478794 -17266104 - MLT2B3 LTR ERVL 0 554 1 3183 180 54 9 chr13 102478808 102479454 -17265444 + L1MB7 LINE L1 5509 6183 -1 202 272 172 41 chr13 102479535 102479704 -17265194 - L2 LINE L2 -245 3027 2837 368 316 152 40 chr13 102480050 102480426 -17264472 - L2 LINE L2 -647 2667 2250 29 0 0 0 chr13 102480437 102480466 -17264432 + AT_rich Low_complexity Low_complexity 1 29 0 8281 17 9 0 chr13 102480468 102481441 -17263457 - L1PA3 LINE L1 0 6155 5176 2133 125 16 0 chr13 102531534 102531838 -17213060 + AluSx SINE Alu 1 309 -3 1374 79 28 0 chr13 102532016 102532193 -17212705 + THE1B LTR MaLR 3 184 -180 1060 97 0 0 chr13 102532194 102532328 -17212570 + AluSg SINE Alu 1 134 -176 2224 95 10 26 chr13 102532328 102532464 -17212434 + AluSg SINE Alu 1 138 -172 2325 101 10 0 chr13 102532464 102532771 -17212127 + AluSx SINE Alu 3 312 0 2224 95 10 26 chr13 102532771 102532939 -17211959 + AluSg SINE Alu 138 300 -10 1014 149 57 29 chr13 102532943 102533118 -17211780 + THE1B LTR MaLR 183 362 -2 2201 130 32 46 chr13 102533336 102533667 -17211231 + THE1B LTR MaLR 1 328 -36 2079 104 66 0 chr13 102533667 102533954 -17210944 - AluSx SINE Alu -6 306 1 2201 130 32 46 chr13 102533954 102533991 -17210907 + THE1B LTR MaLR 328 364 0 404 202 8 53 chr13 102534064 102534313 -17210585 + AluJo SINE Alu 5 309 -3 779 153 8 8 chr13 102534471 102534602 -17210296 + FLAM_A SINE Alu 1 131 -2 2178 97 35 0 chr13 102534772 102535060 -17209838 + AluSg SINE Alu 1 298 -12 2242 102 7 0 chr13 102535124 102535419 -17209479 + AluSx SINE Alu 1 297 -15 2027 155 0 3 chr13 102535680 102535983 -17208915 - AluJb SINE Alu -10 302 1 1847 182 0 3 chr13 102537751 102538053 -17206845 + AluJb SINE Alu 1 301 -11 280 273 58 39 chr13 102538441 102538595 -17206303 - MIR3 SINE MIR -18 190 34 2459 70 0 10 chr13 102538655 102538969 -17205929 + AluY SINE Alu 1 311 0 213 280 140 0 chr13 102539297 102539404 -17205494 + L2 LINE L2 3025 3146 -167 2131 107 23 17 chr13 102540001 102540301 -17204597 - AluSx SINE Alu -10 302 1 207 125 75 0 chr13 102540458 102540498 -17204400 + A-rich Low_complexity Low_complexity 4 46 0 981 114 0 63 chr13 102540665 102540823 -17204075 + AluSg/x SINE Alu 158 305 -7 190 288 214 7 chr13 102540934 102541243 -17203655 + L2 LINE L2 2120 2492 -822 353 191 101 0 chr13 102541349 102541438 -17203460 + MER69 DNA AcHobo 2429 2526 0 183 156 0 0 chr13 102541477 102541509 -17203389 + A-rich Low_complexity Low_complexity 1 32 0 2320 112 0 0 chr13 102541695 102541999 -17202899 + AluSx SINE Alu 1 304 -8 271 314 147 22 chr13 102542089 102542253 -17202645 + L2 LINE L2 2856 2998 -315 2136 104 0 20 chr13 102542253 102542551 -17202347 + AluSg SINE Alu 1 292 -18 271 314 147 22 chr13 102542551 102542793 -17202105 + L2 LINE L2 2998 3313 0 2410 189 49 45 chr13 102543291 102543349 -17201549 - L1MB7 LINE L1 0 6184 6128 2311 114 0 6 chr13 102543349 102543664 -17201234 - AluSq SINE Alu 0 313 1 2410 189 49 45 chr13 102543664 102544177 -17200721 - L1MB7 LINE L1 -56 6128 5611 972 124 0 0 chr13 102544177 102544306 -17200592 - AluSp SINE Alu -53 260 132 3052 162 44 38 chr13 102544306 102544652 -17200246 - L1MB7 LINE L1 -596 5582 5240 2190 122 0 0 chr13 102544652 102544940 -17199958 + AluSx SINE Alu 1 288 -24 3052 162 44 38 chr13 102544940 102545292 -17199606 - L1MB7 LINE L1 -938 5240 4892 2532 167 8 25 chr13 102545292 102545344 -17199554 - MLT2C2 LTR ERVL 0 464 413 2134 113 7 7 chr13 102545344 102545636 -17199262 + AluSx SINE Alu 5 296 -16 2532 167 8 25 chr13 102545636 102546055 -17198843 - MLT2C2 LTR ERVL -51 413 1 3052 162 44 38 chr13 102546055 102546178 -17198720 - L1MB7 LINE L1 -1286 4892 4771 2254 105 3 3 chr13 102546178 102546473 -17198425 - AluSc SINE Alu -14 295 1 3052 162 44 38 chr13 102546473 102546606 -17198292 - L1MB7 LINE L1 -1407 4771 4625 * 3528 69 11 0 chr13 102546599 102547241 -17197657 - L1P3 LINE L1 -615 5557 4912 2413 48 32 38 chr13 102547241 102547554 -17197344 - AluY SINE Alu 0 311 1 4970 41 7 0 chr13 102547578 102548169 -17196729 + L1PA8 LINE L1 5574 6168 -4 7447 202 78 63 chr13 102548169 102548561 -17196337 - L1MB7 LINE L1 -1507 4639 4254 306 50 0 0 chr13 102548561 102548601 -17196297 + (TG)n Simple_repeat Simple_repeat 1 40 0 7447 202 78 63 chr13 102548601 102548662 -17196236 - L1MB7 LINE L1 -1892 4254 4195 2179 87 27 17 chr13 102548662 102548960 -17195938 + AluSg SINE Alu 1 301 -9 7447 202 78 63 chr13 102548960 102549561 -17195337 - L1MB7 LINE L1 -1951 4195 3604 2127 112 11 0 chr13 102549561 102549867 -17195031 + AluSx SINE Alu 1 309 0 7447 202 78 63 chr13 102549867 102550435 -17194463 - L1MB7 LINE L1 -2542 3604 3045 234 0 0 0 chr13 102550435 102550461 -17194437 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2342 58 0 0 chr13 102550461 102550735 -17194163 - AluY SINE Alu -37 274 1 7447 202 78 63 chr13 102550735 102550762 -17194136 - L1MB7 LINE L1 -3101 3045 3020 772 200 0 44 chr13 102550762 102550922 -17193976 - FRAM SINE Alu -9 157 5 7447 202 78 63 chr13 102550922 102551493 -17193405 - L1MB7 LINE L1 -3126 3020 2459 1831 170 7 0 chr13 102551493 102551793 -17193105 - AluSx SINE Alu -10 302 1 324 109 0 0 chr13 102551797 102551843 -17193055 - AluSp SINE Alu -172 131 86 7447 202 78 63 chr13 102551843 102551913 -17192985 - L1MB7 LINE L1 -3689 2457 2258 207 0 0 0 chr13 102551958 102551981 -17192917 + (TA)n Simple_repeat Simple_repeat 2 24 0 2502 69 0 3 chr13 102551981 102552286 -17192612 - AluY SINE Alu -7 304 1 979 98 0 23 chr13 102552670 102552803 -17192095 - FLAM_C SINE Alu -13 130 1 966 139 88 139 chr13 102552884 102553143 -17191755 - MER33 DNA MER1_type -2262 323 83 2430 64 0 7 chr13 102553143 102553441 -17191457 + AluSg SINE Alu 1 296 -14 966 139 88 139 chr13 102553441 102553520 -17191378 - MER33 DNA MER1_type -2502 83 2 391 310 153 9 chr13 102553723 102553939 -17190959 - MIR SINE MIR 0 262 16 971 105 0 0 chr13 102554471 102554604 -17190294 + FLAM_C SINE Alu 1 133 0 303 225 108 8 chr13 102554668 102554788 -17190110 - MIR SINE MIR -15 247 116 398 172 101 5 chr13 102555632 102555734 -17189164 - MIR SINE MIR -62 146 37 2209 101 20 16 chr13 102555840 102556146 -17188752 - AluSx SINE Alu -5 307 1 1504 173 29 4 chr13 102556592 102556904 -17187994 + AluJo SINE Alu 1 319 0 2476 69 0 10 chr13 102557111 102557414 -17187484 - AluSx SINE Alu -12 300 1 1935 104 0 67 chr13 102557993 102558290 -17186608 + AluSx SINE Alu 1 277 -35 25 0 0 0 chr13 102559013 102559038 -17185860 + GC_rich Low_complexity Low_complexity 1 25 0 207 246 0 0 chr13 102559069 102559126 -17185772 + (CCCCAA)n Simple_repeat Simple_repeat 1 57 0 28 0 0 0 chr13 102559280 102559308 -17185590 + GC_rich Low_complexity Low_complexity 1 28 0 233 244 24 32 chr13 102559322 102559445 -17185453 + (CCCCG)n Simple_repeat Simple_repeat 5 126 0 32 67 0 0 chr13 102559661 102559721 -17185177 + GC_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr13 102559871 102559892 -17185006 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 102561079 102561099 -17183799 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 315 369 54 0 chr13 102561552 102561682 -17183216 - MIR3 SINE MIR -30 178 42 237 267 119 0 chr13 102561710 102561811 -17183087 + L3 LINE CR1 1200 1312 -265 689 223 121 28 chr13 102562206 102562421 -17182477 + LTR50 LTR ERVL 1 235 -560 304 238 55 38 chr13 102562736 102562891 -17182007 + LTR41 LTR ERVL 621 791 -4 2232 117 0 0 chr13 102563004 102563302 -17181596 + AluSx SINE Alu 1 298 -14 1532 103 27 18 chr13 102563940 102564164 -17180734 + THE1B LTR MaLR 1 226 -138 258 288 72 8 chr13 102564632 102564757 -17180141 + L1P LINE L1 4884 5016 -1130 473 294 65 29 chr13 102565005 102565284 -17179614 + L1MCa LINE L1 1280 1568 -4858 383 341 58 18 chr13 102565597 102565823 -17179075 - MIR SINE MIR -27 235 1 1377 178 40 52 chr13 102566493 102566819 -17178079 + MER33 DNA MER1_type 1 322 -2 1151 278 38 38 chr13 102566833 102567533 -17177365 + L2 LINE L2 2617 3308 -5 471 239 74 85 chr13 102567863 102567975 -17176923 + MLT1I LTR MaLR 95 207 -202 2439 91 0 3 chr13 102567975 102568282 -17176616 + AluSc SINE Alu 1 306 -3 471 239 74 85 chr13 102568282 102568520 -17176378 + MLT1I LTR MaLR 207 409 0 1144 152 18 0 chr13 102568526 102568691 -17176207 + AluSg/x SINE Alu 117 332 0 433 0 0 0 chr13 102568691 102568739 -17176159 + (TAAA)n Simple_repeat Simple_repeat 1 136 0 4122 124 55 3 chr13 102569250 102569854 -17175044 + MER41B LTR ERV1 1 635 0 1675 234 44 36 chr13 102570518 102571014 -17173884 - L1ME3A LINE L1 0 6170 5671 264 59 0 0 chr13 102571014 102571048 -17173850 + (TG)n Simple_repeat Simple_repeat 2 35 0 * 333 0 0 0 chr13 102571047 102571084 -17173814 + (TA)n Simple_repeat Simple_repeat 1 37 0 2594 27 24 0 chr13 102571118 102571413 -17173485 - L1PA2 LINE L1 0 6155 5854 1917 134 3 3 chr13 102571939 102572230 -17172668 + L1MC2 LINE L1 5542 5832 -512 373 79 0 63 chr13 102572231 102572294 -17172604 + L1MB3 LINE L1 5432 5490 -693 554 125 0 0 chr13 102572294 102572366 -17172532 - AluS SINE Alu -234 78 7 1795 88 8 4 chr13 102572366 102572605 -17172293 + AluSg/x SINE Alu 70 309 -1 3551 174 60 5 chr13 102572605 102573261 -17171637 + L1MB3 LINE L1 5490 6181 -2 2220 108 0 0 chr13 102573268 102573554 -17171344 + AluSx SINE Alu 1 286 -26 216 0 0 0 chr13 102573554 102573578 -17171320 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2127 196 46 4 chr13 102573586 102574040 -17170858 + L1MC2 LINE L1 5808 6280 -64 204 125 0 0 chr13 102576530 102576562 -17168336 - MIR SINE MIR -115 147 116 2617 242 45 16 chr13 102577595 102578306 -17166592 - L1ME1 LINE L1 -5 6230 5499 1412 127 32 12 chr13 102578307 102578559 -17166339 - L1MA4 LINE L1 -5 6295 6039 6126 210 120 97 chr13 102578561 102578848 -17166050 - L1ME1 LINE L1 -1156 5059 4780 942 127 13 32 chr13 102578848 102579005 -17165893 + L1PB3 LINE L1 6000 6153 -1 6126 210 120 97 chr13 102579005 102579506 -17165392 - L1ME1 LINE L1 -1435 4780 4292 1546 191 9 46 chr13 102579506 102579830 -17165068 - AluJb SINE Alu 0 312 1 6126 210 120 97 chr13 102579830 102579990 -17164908 - L1ME1 LINE L1 -1923 4292 4137 375 147 15 0 chr13 102579990 102580058 -17164840 - L1MC1 LINE L1 -3 6330 6262 6126 210 120 97 chr13 102580058 102580416 -17164482 - L1ME1 LINE L1 -2078 4137 3789 923 55 0 0 chr13 102580416 102580526 -17164372 - L1MA2 LINE L1 0 6304 6195 6126 210 120 97 chr13 102580526 102580634 -17164264 - L1ME1 LINE L1 -2426 3789 3685 1367 174 0 0 chr13 102580634 102580846 -17164052 + AluJo SINE Alu 87 298 -14 6126 210 120 97 chr13 102580846 102581144 -17163754 - L1ME1 LINE L1 -2530 3685 3395 2057 141 3 0 chr13 102581144 102581441 -17163457 - AluSq SINE Alu -15 298 1 6126 210 120 97 chr13 102581441 102582678 -17162220 - L1ME1 LINE L1 -2820 3395 1872 220 278 28 0 chr13 102583681 102583753 -17161145 + CT-rich Low_complexity Low_complexity 1 74 0 692 234 28 117 chr13 102583770 102584052 -17160846 + MIR SINE MIR 6 262 0 1968 63 0 4 chr13 102584386 102584623 -17160275 - AluY SINE Alu -75 236 1 487 237 101 87 chr13 102585628 102585835 -17159063 - L1P4 LINE L1 -367 5754 5561 315 250 48 39 chr13 102585860 102585964 -17158934 - L2 LINE L2 0 3313 3209 315 303 11 85 chr13 102586114 102586229 -17158669 - MIR SINE MIR -87 175 78 2224 116 7 10 chr13 102586229 102586539 -17158359 + AluSq SINE Alu 1 309 -4 315 303 11 85 chr13 102586539 102586611 -17158287 - MIR SINE MIR -184 78 2 681 332 65 30 chr13 102586882 102587249 -17157649 + L2 LINE L2 2888 3267 -5 355 102 0 0 chr13 102587260 102587309 -17157589 + MADE1 DNA Mariner 5 53 -27 2370 96 0 6 chr13 102587329 102587642 -17157256 - AluY SINE Alu 0 311 1 396 59 0 0 chr13 102587647 102587698 -17157200 + MADE1 DNA Mariner 30 80 0 738 147 9 0 chr13 102587995 102588111 -17156787 - L1MB2 LINE L1 -4 6167 6051 22 0 0 0 chr13 102588215 102588237 -17156661 + AT_rich Low_complexity Low_complexity 1 22 0 364 135 0 37 chr13 102588304 102588380 -17156518 - AluJ/FRAM SINE Alu -8 294 134 2087 119 20 3 chr13 102588380 102588673 -17156225 - AluSq SINE Alu -15 298 1 277 203 87 14 chr13 102589054 102589123 -17155775 - MIR SINE MIR -83 179 106 209 367 63 0 chr13 102589193 102589272 -17155626 + L2 LINE L2 3113 3196 -76 2062 134 3 0 chr13 102590337 102590628 -17154270 + AluSx SINE Alu 9 300 -12 431 248 133 75 chr13 102591123 102591401 -17153497 - MLT1K LTR MaLR -4 584 291 426 264 27 40 chr13 102591478 102591626 -17153272 - MLT1K LTR MaLR -436 152 7 191 248 162 86 chr13 102591727 102591844 -17153054 + MIR SINE MIR 16 141 -67 1749 245 45 17 chr13 102592508 102593038 -17151860 + MLT1H1 LTR MaLR 10 554 -1 2394 88 7 0 chr13 102593236 102593533 -17151365 + AluSg SINE Alu 1 299 -11 1973 173 46 77 chr13 102593692 102593771 -17151127 + MLT1D LTR MaLR 1 81 -424 2097 102 72 41 chr13 102593771 102594134 -17150764 - THE1C LTR MaLR -1 374 1 1973 173 46 77 chr13 102594134 102594575 -17150323 + MLT1D LTR MaLR 81 505 0 1724 165 61 15 chr13 102594723 102595050 -17149848 - MSTA LTR MaLR 0 428 87 672 209 0 0 chr13 102595128 102595305 -17149593 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 924 201 0 1 chr13 102595341 102596118 -17148780 + (TGGA)n Simple_repeat Simple_repeat 1 775 0 5025 158 21 30 chr13 102597037 102597817 -17147081 + L1MA9 LINE L1 5357 6128 -184 2259 102 3 0 chr13 102597817 102598112 -17146786 + AluSx SINE Alu 3 298 -14 5025 158 21 30 chr13 102598112 102598296 -17146602 + L1MA9 LINE L1 6128 6312 0 439 220 83 48 chr13 102598381 102598549 -17146349 - L1MEc LINE L1 -4396 2000 1827 717 211 8 0 chr13 102600253 102600376 -17144522 + FLAM_A SINE Alu 1 124 -9 204 264 207 0 chr13 102600522 102600609 -17144289 - MIR SINE MIR -81 127 23 203 280 90 30 chr13 102600748 102600848 -17144050 + MIR3 SINE MIR 78 183 -25 352 306 95 0 chr13 102600908 102601055 -17143843 - MIR SINE MIR -80 182 22 372 224 92 20 chr13 102601341 102601439 -17143459 + Charlie8 DNA MER1_type 1 105 -2312 226 177 16 16 chr13 102602230 102602292 -17142606 + (TA)n Simple_repeat Simple_repeat 1 62 0 1286 276 35 59 chr13 102602293 102602950 -17141948 + L1MEd LINE L1 516 1156 -4963 * 1411 214 76 14 chr13 102602937 102603292 -17141606 + L1ME3A LINE L1 5785 6161 -9 1977 107 0 122 chr13 102603343 102603697 -17141201 + AluSp SINE Alu 1 311 -2 491 282 38 75 chr13 102603697 102603960 -17140938 + L1MEd LINE L1 1131 1449 -1041 1616 158 30 40 chr13 102603960 102604257 -17140641 + AluJo SINE Alu 3 296 -16 491 282 38 75 chr13 102604257 102604432 -17140466 + L1MEd LINE L1 1449 1629 -861 2509 156 68 14 chr13 102604571 102605013 -17139885 + MLT1C LTR MaLR 1 466 -1 234 176 0 0 chr13 102605373 102605424 -17139474 + GA-rich Low_complexity Low_complexity 1 51 0 669 185 21 91 chr13 102605534 102605752 -17139146 + MLT1E2 LTR MaLR 5 220 -285 2330 112 5 61 chr13 102605758 102606134 -17138764 - THE1A LTR MaLR 0 355 1 9453 81 25 2 chr13 102606134 102607377 -17137521 - THE1A-int LTR MaLR 0 1580 309 1041 104 13 0 chr13 102607383 102607537 -17137361 - THE1A-int LTR MaLR -1424 156 1 2218 109 66 26 chr13 102607537 102607887 -17137011 - THE1B LTR MaLR 0 364 1 615 228 6 32 chr13 102607889 102608047 -17136851 + MLT1E2 LTR MaLR 210 363 -142 1983 149 0 0 chr13 102608047 102608342 -17136556 - AluSx SINE Alu -17 295 1 897 146 7 0 chr13 102608348 102608485 -17136413 - AluJo SINE Alu -174 138 1 546 146 21 10 chr13 102608490 102608586 -17136312 + MLT1E2 LTR MaLR 527 623 -3 23 33 0 0 chr13 102608600 102608630 -17136268 + AT_rich Low_complexity Low_complexity 1 30 0 315 302 38 57 chr13 102608673 102608885 -17136013 + L1MEd LINE L1 2397 2604 -3525 344 189 31 5 chr13 102609930 102610185 -17134713 + AluJo SINE Alu 9 302 0 2274 143 113 33 chr13 102610379 102611093 -17133805 + LTR1B LTR ERV1 1 826 0 851 209 31 42 chr13 102611426 102611617 -17133281 - MER5A DNA MER1_type 0 189 1 2331 89 3 3 chr13 102611998 102612302 -17132596 + AluSc SINE Alu 1 304 -5 23 33 0 0 chr13 102612926 102612956 -17131942 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr13 102613436 102613460 -17131438 + AT_rich Low_complexity Low_complexity 1 24 0 2246 118 0 3 chr13 102613525 102613821 -17131077 - AluSq SINE Alu -18 295 1 2271 96 7 0 chr13 102613830 102614123 -17130775 - AluSg SINE Alu -15 295 1 730 95 0 0 chr13 102614123 102614218 -17130680 - MER57B LTR ERV1 -339 95 1 7331 166 19 33 chr13 102614876 102615705 -17129193 + L1MC3 LINE L1 5446 6285 -1500 2741 142 36 5 chr13 102615705 102616120 -17128778 - MSTA LTR MaLR 0 428 1 7331 166 19 33 chr13 102616120 102616295 -17128603 + L1MC3 LINE L1 6285 6461 -1324 1844 187 0 0 chr13 102616295 102616595 -17128303 + AluJo SINE Alu 1 300 -12 7331 166 19 33 chr13 102616595 102616773 -17128125 + L1MC3 LINE L1 6461 6640 -1145 3890 149 37 61 chr13 102616773 102617479 -17127419 - LTR8 LTR ERV1 0 691 3 7331 166 19 33 chr13 102617479 102617509 -17127389 + L1MC3 LINE L1 6640 6669 -1116 1788 146 186 81 chr13 102617509 102618051 -17126847 - MER4A LTR ERV1 0 600 2 7331 166 19 33 chr13 102618051 102618229 -17126669 + L1MC3 LINE L1 6669 6819 -966 1441 145 20 22 chr13 102618238 102618544 -17126354 - MER61C LTR ERV1 -28 404 1 1402 152 30 63 chr13 102618545 102618848 -17126050 + L1MC3 LINE L1 6817 7109 -676 2079 162 8 16 chr13 102618858 102618914 -17125984 + L1MC3 LINE L1 7412 7467 -318 1141 233 97 88 chr13 102618914 102619520 -17125378 + LTR9 LTR ERV1 1 612 0 2079 162 8 16 chr13 102619520 102619834 -17125064 + L1MC3 LINE L1 7467 7779 -6 240 125 21 0 chr13 102619901 102619949 -17124949 + L1MC3 LINE L1 7731 7779 -6 21 0 0 0 chr13 102620235 102620256 -17124642 + AT_rich Low_complexity Low_complexity 1 21 0 2220 116 0 3 chr13 102620394 102620695 -17124203 + AluSc SINE Alu 1 300 -9 814 200 52 0 chr13 102621037 102621192 -17123706 + AluSg/x SINE Alu 129 291 -21 283 244 109 25 chr13 102622515 102622634 -17122264 + MIR SINE MIR 19 147 -61 860 276 106 28 chr13 102622668 102623132 -17121766 + LTR33 LTR ERVL 22 521 0 186 225 0 25 chr13 102623478 102623518 -17121380 + L3b LINE CR1 1535 1573 -10 3291 99 59 39 chr13 102623780 102624378 -17120520 + MER4B LTR ERV1 1 779 0 264 254 0 0 chr13 102624407 102624466 -17120432 - MIR SINE MIR -8 254 196 4503 181 43 5 chr13 102624662 102625458 -17119440 - LTR1B LTR ERV1 0 826 1 354 194 0 0 chr13 102626044 102626106 -17118792 - MIR SINE MIR -124 138 77 372 327 161 0 chr13 102626660 102626871 -17118027 + MIR SINE MIR 2 246 -16 372 272 133 0 chr13 102627210 102627368 -17117530 - LTR33 LTR ERVL -7 514 336 350 259 104 0 chr13 102627494 102627629 -17117269 - LTR33 LTR ERVL -334 187 39 338 194 0 11 chr13 102628297 102628390 -17116508 + (CA)n Simple_repeat Simple_repeat 1 92 0 569 196 0 0 chr13 102628835 102628937 -17115961 + U13 snRNA snRNA 1 102 -2 1031 170 211 63 chr13 102629356 102629674 -17115224 - MLT1A1 LTR MaLR 0 365 1 2072 190 92 16 chr13 102629707 102630143 -17114755 + MLT2B1 LTR ERVL 1 469 -51 551 165 9 0 chr13 102630143 102630252 -17114646 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 278 108 0 0 chr13 102630275 102630312 -17114586 + MLT2D LTR ERVL 374 410 -4 256 255 133 31 chr13 102630733 102630831 -17114067 + MLT1I LTR MaLR 275 382 -27 1867 137 14 0 chr13 102630930 102631278 -17113620 + AluSx SINE Alu 1 352 0 607 195 241 39 chr13 102631365 102631622 -17113276 - MER4C LTR ERV1 0 465 157 1664 142 49 44 chr13 102631641 102631985 -17112913 - MER4A LTR ERV1 -318 346 1 650 299 118 51 chr13 102632805 102633239 -17111659 - L2 LINE L2 -1 3271 2809 2179 112 20 0 chr13 102633282 102633457 -17111441 - AluSx SINE Alu -1 311 126 216 0 0 0 chr13 102633457 102633481 -17111417 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2179 112 20 0 chr13 102633481 102633610 -17111288 - AluSx SINE Alu -186 126 1 282 290 60 20 chr13 102633987 102634087 -17110811 - MIR SINE MIR -139 123 20 184 382 0 0 chr13 102634112 102634180 -17110718 + MIR3 SINE MIR 8 75 -133 797 238 51 33 chr13 102635049 102635109 -17109789 - MIR SINE MIR -10 252 195 2313 104 0 0 chr13 102635109 102635407 -17109491 - AluSx SINE Alu -14 298 1 797 238 51 33 chr13 102635407 102635560 -17109338 - MIR SINE MIR -67 195 35 197 352 46 0 chr13 102635832 102635940 -17108958 - MIR SINE MIR 0 262 150 38 51 0 0 chr13 102636259 102636318 -17108580 + AT_rich Low_complexity Low_complexity 1 59 0 204 97 0 0 chr13 102636390 102636421 -17108477 + (CA)n Simple_repeat Simple_repeat 2 32 0 584 249 61 67 chr13 102636425 102636542 -17108356 - MIR SINE MIR 0 262 146 1800 213 52 0 chr13 102636542 102636889 -17108009 - MLT1A1 LTR MaLR 0 365 1 584 249 61 67 chr13 102636889 102637022 -17107876 - MIR SINE MIR -116 146 16 414 268 54 0 chr13 102637836 102637948 -17106950 + MIR SINE MIR 32 149 -113 664 208 0 8 chr13 102638390 102638510 -17106388 + FLAM_A SINE Alu 1 119 -14 424 214 40 6 chr13 102638510 102638683 -17106215 + (TA)n Simple_repeat Simple_repeat 2 180 0 2519 230 99 22 chr13 102638685 102639403 -17105495 + L1ME3 LINE L1 5390 6162 0 23 54 0 0 chr13 102639407 102639444 -17105454 + AT_rich Low_complexity Low_complexity 1 37 0 2055 203 17 3 chr13 102640116 102640476 -17104422 - MLT1A1 LTR MaLR 0 365 1 5247 154 7 22 chr13 102640554 102640839 -17104059 - L1M1 LINE L1 -743 5403 5115 1595 116 53 181 chr13 102640839 102641269 -17103629 - THE1C LTR MaLR 0 375 1 5247 154 7 22 chr13 102641269 102641486 -17103412 - L1M1 LINE L1 -1031 5115 4896 1955 136 3 14 chr13 102641486 102641803 -17103095 + AluSx SINE Alu 1 312 0 5247 154 7 22 chr13 102641803 102642400 -17102498 - L1M1 LINE L1 -1250 4896 4409 601 143 0 0 chr13 102642765 102642849 -17102049 - AluSg/x SINE Alu -71 239 156 1997 155 30 0 chr13 102644318 102644621 -17100277 + AluSx SINE Alu 1 312 0 1738 205 8 41 chr13 102645792 102646158 -17098740 + MLT1A1 LTR MaLR 12 365 0 331 67 0 0 chr13 102646159 102646204 -17098694 - MSTD LTR MaLR -27 369 325 371 223 65 98 chr13 102646217 102646401 -17098497 - MLT1J2 LTR MaLR -6 444 267 2227 129 0 0 chr13 102646609 102646903 -17097995 - AluSx SINE Alu -18 294 1 21 0 0 0 chr13 102647027 102647048 -17097850 + AT_rich Low_complexity Low_complexity 1 21 0 2294 106 0 0 chr13 102647804 102648097 -17096801 + AluSq SINE Alu 1 293 -20 213 220 77 66 chr13 102648595 102648686 -17096212 - MER5C DNA MER1_type 0 324 233 393 202 156 18 chr13 102648804 102648913 -17095985 - MER5C DNA MER1_type -200 124 1 425 269 60 99 chr13 102649091 102649374 -17095524 - MLT1L LTR MaLR -335 280 9 2923 153 48 106 chr13 102649714 102650406 -17094492 + L1MC3 LINE L1 7124 7775 -10 1310 163 15 0 chr13 102650406 102650608 -17094290 + AluJb SINE Alu 86 290 -22 901 133 48 6 chr13 102650653 102650819 -17094079 + L1MB3 LINE L1 6008 6180 -3 2091 136 160 8 chr13 102650986 102651354 -17093544 + MSTA LTR MaLR 1 424 -4 394 163 139 0 chr13 102651518 102651604 -17093294 + LTR33 LTR ERVL 422 519 -2 339 242 0 91 chr13 102651780 102651879 -17093019 - LTR33 LTR ERVL -431 90 1 448 303 170 32 chr13 102652008 102652378 -17092520 - MLT1L LTR MaLR 0 615 195 785 217 0 0 chr13 102652805 102652962 -17091936 - L1PA16 LINE L1 -1136 5010 4854 6094 127 8 4 chr13 102652962 102654131 -17090767 + L1PA16 LINE L1 4993 6156 -10 216 0 0 0 chr13 102655544 102655568 -17089330 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2123 136 0 0 chr13 102655590 102655898 -17089000 - AluSx SINE Alu -4 308 1 321 47 0 0 chr13 102655899 102655942 -17088956 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 602 240 157 21 chr13 102656205 102656447 -17088451 + HAL1 LINE L1 2138 2412 -95 1024 204 29 69 chr13 102656462 102656737 -17088161 - MLT1B LTR MaLR 0 390 127 847 199 287 34 chr13 102656819 102657206 -17087692 + MER31A LTR ERV1 1 485 0 1746 251 82 32 chr13 102657391 102657952 -17086946 + MLT1E LTR MaLR 5 593 0 1013 288 65 59 chr13 102658302 102658734 -17086164 - L2 LINE L2 -1 3312 2875 1354 166 27 104 chr13 102658734 102659071 -17085827 + AluJb SINE Alu 1 311 -1 1013 288 65 59 chr13 102659071 102659131 -17085767 - L2 LINE L2 -438 2875 2817 205 171 0 0 chr13 102659132 102659167 -17085731 + GA-rich Low_complexity Low_complexity 1 35 0 213 279 129 27 chr13 102659167 102659314 -17085584 - L2 LINE L2 -411 2903 2742 2624 110 3 43 chr13 102659422 102659813 -17085085 - THE1C LTR MaLR 0 375 1 275 318 151 11 chr13 102659833 102660114 -17084784 + L1MC/D LINE L1 5602 5920 -400 252 120 0 0 chr13 102660163 102660213 -17084685 + (TA)n Simple_repeat Simple_repeat 1 50 0 1300 166 30 47 chr13 102660239 102660474 -17084424 - MER46A DNA MER2_type 0 236 6 2170 107 31 0 chr13 102660481 102660771 -17084127 + AluSx SINE Alu 1 299 -13 2274 112 56 12 chr13 102660892 102661215 -17083683 - MER1B DNA MER1_type 0 337 1 828 132 0 0 chr13 102662222 102662336 -17082562 + FLAM_C SINE Alu 5 118 -25 2166 132 25 25 chr13 102662359 102662722 -17082176 + THE1C LTR MaLR 1 363 -12 362 222 111 56 chr13 102663433 102663518 -17081380 + MIR SINE MIR 11 107 -155 2792 106 3 11 chr13 102663518 102663885 -17081013 + THE1B LTR MaLR 1 364 0 362 222 111 56 chr13 102663885 102663925 -17080973 + MIR SINE MIR 107 143 -119 267 261 34 11 chr13 102663971 102664059 -17080839 + MIR SINE MIR 138 227 -35 456 224 14 91 chr13 102664299 102664328 -17080570 + MIR SINE MIR 23 53 -209 746 184 56 78 chr13 102664328 102664507 -17080391 + MER5B DNA MER1_type 4 178 0 456 224 14 91 chr13 102664507 102664620 -17080278 + MIR SINE MIR 53 154 -108 682 289 76 19 chr13 102664681 102664996 -17079902 + LTR33 LTR ERVL 175 507 -14 1834 166 14 0 chr13 102665332 102665627 -17079271 + AluJb SINE Alu 1 299 -13 2230 118 3 0 chr13 102665705 102666002 -17078896 - AluSx SINE Alu -14 298 1 750 243 11 6 chr13 102666160 102666337 -17078561 - MIR SINE MIR -18 244 67 300 197 113 0 chr13 102666557 102666628 -17078270 + L1ME LINE L1 5623 5701 -463 2057 126 17 0 chr13 102666628 102666929 -17077969 + AluSx SINE Alu 1 306 -6 261 292 149 25 chr13 102667046 102667207 -17077691 + MIR3 SINE MIR 5 169 -39 216 0 0 0 chr13 102667848 102667872 -17077026 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 811 186 41 0 chr13 102667874 102668019 -17076879 - AluJb SINE Alu -34 278 128 464 216 122 0 chr13 102668138 102668286 -17076612 - AluJo SINE Alu -144 168 3 1324 72 84 0 chr13 102668472 102668639 -17076259 + AluSx SINE Alu 1 181 -131 1841 145 17 10 chr13 102668680 102668969 -17075929 - AluSx SINE Alu -21 291 1 245 244 49 12 chr13 102669065 102669147 -17075751 - L1M1 LINE L1 -3905 3660 3576 1853 161 10 0 chr13 102669284 102669582 -17075316 - AluJo SINE Alu -11 301 1 1872 156 0 13 chr13 102669752 102670053 -17074845 + AluJb SINE Alu 1 297 -15 2231 46 42 11 chr13 102670363 102670646 -17074252 + AluY SINE Alu 1 292 -19 662 243 42 100 chr13 102670819 102670898 -17074000 - HAL1b LINE L1 -696 652 570 2249 106 3 0 chr13 102670898 102671190 -17073708 + AluSg SINE Alu 1 293 -17 662 243 42 100 chr13 102671190 102671235 -17073663 - HAL1b LINE L1 -778 570 524 1942 147 0 0 chr13 102671235 102671521 -17073377 + AluSx SINE Alu 1 286 -26 662 243 42 100 chr13 102671521 102671843 -17073055 - HAL1b LINE L1 -824 524 231 1744 143 58 20 chr13 102671946 102672240 -17072658 - AluSx SINE Alu -7 305 1 700 232 82 12 chr13 102673841 102674358 -17070540 - L1ME3A LINE L1 -8 6162 5565 320 218 64 0 chr13 102674439 102674517 -17070381 - MLT1H LTR MaLR -21 528 446 1525 165 98 49 chr13 102674522 102674597 -17070301 - MSTC LTR MaLR -2 426 356 3002 36 3 28 chr13 102674597 102674988 -17069910 + L1PA4 LINE L1 5775 6155 0 1525 165 98 49 chr13 102674988 102675318 -17069580 - MSTC LTR MaLR -72 356 1 461 256 42 42 chr13 102675455 102675646 -17069252 - MLT1H LTR MaLR -268 281 91 1821 47 4 0 chr13 102675651 102675886 -17069012 - L1PA13 LINE L1 0 6163 5928 243 318 48 80 chr13 102675966 102676303 -17068595 - MLT1H-int LTR MaLR -17 1354 1029 2127 112 0 31 chr13 102676348 102676670 -17068228 - AluSx SINE Alu 0 312 1 201 74 0 0 chr13 102676886 102676913 -17067985 + (T)n Simple_repeat Simple_repeat 1 27 0 499 92 0 23 chr13 102677294 102677381 -17067517 - L1MA4 LINE L1 0 6300 6216 1434 249 13 18 chr13 102677706 102678100 -17066798 + LTR40c LTR ERVL 74 465 0 2010 146 0 0 chr13 102678720 102679014 -17065884 + AluSx SINE Alu 12 305 -7 686 232 49 58 chr13 102679049 102679273 -17065625 + MIR SINE MIR 1 222 -40 643 157 0 0 chr13 102679505 102679613 -17065285 + MLT1C LTR MaLR 360 467 0 2485 84 0 0 chr13 102679657 102679966 -17064932 - AluSx SINE Alu -2 310 2 2477 88 0 0 chr13 102680466 102680772 -17064126 - AluSx SINE Alu -6 306 1 2345 237 75 28 chr13 102680863 102681659 -17063239 + L1MD1 LINE L1 5391 6224 -18 2335 125 65 31 chr13 102681796 102682213 -17062685 - MSTB1 LTR MaLR -1 431 1 1140 268 100 28 chr13 102682237 102682894 -17062004 - L1ME3A LINE L1 -214 5956 5245 2404 136 17 80 chr13 102683059 102683452 -17061446 + L1MB3 LINE L1 5681 6097 -86 1936 152 0 20 chr13 102683452 102683754 -17061144 + AluJb SINE Alu 1 296 -16 2404 136 17 80 chr13 102683754 102683846 -17061052 + L1MB3 LINE L1 6097 6133 -50 2057 141 0 20 chr13 102683846 102684152 -17060746 + AluSx SINE Alu 1 300 -12 2404 136 17 80 chr13 102684152 102684193 -17060705 + L1MB3 LINE L1 6133 6175 -8 1818 109 0 34 chr13 102684420 102684685 -17060213 - AluY SINE Alu -15 296 41 194 0 0 37 chr13 102684772 102684799 -17060099 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2106 120 7 3 chr13 102684866 102685165 -17059733 + AluSq SINE Alu 1 300 -13 2523 67 0 0 chr13 102685640 102685939 -17058959 - AluY SINE Alu -12 299 1 254 279 22 52 chr13 102686085 102686221 -17058677 - MARNA DNA Mariner -347 239 108 193 352 23 11 chr13 102686479 102686567 -17058331 - L2 LINE L2 -20 3293 3205 2488 52 0 0 chr13 102686592 102686901 -17057997 + L1PA7 LINE L1 5844 6152 -2 1885 172 3 0 chr13 102687133 102687436 -17057462 - AluSx SINE Alu -8 304 1 257 298 91 71 chr13 102687533 102687785 -17057113 - MIR SINE MIR 0 262 6 22 35 0 0 chr13 102688035 102688064 -17056834 + AT_rich Low_complexity Low_complexity 1 29 0 340 308 151 37 chr13 102688402 102688701 -17056197 - L1MC4a LINE L1 -1878 5930 5598 858 131 49 0 chr13 102689867 102689989 -17054909 - FLAM_C SINE Alu -15 128 1 181 229 0 21 chr13 102690096 102690144 -17054754 + L2 LINE L2 3267 3313 0 2327 87 3 0 chr13 102690711 102691009 -17053889 + AluSg SINE Alu 1 299 -11 247 289 114 35 chr13 102691493 102691607 -17053291 + MIR SINE MIR 18 140 -68 310 97 65 0 chr13 102691924 102691986 -17052912 - L1MDa LINE L1 -3914 2626 2561 2126 106 11 0 chr13 102693051 102693334 -17051564 - AluSx SINE Alu -26 286 1 2888 0 0 0 chr13 102694129 102694438 -17050460 - AluYa5 SINE Alu -2 309 1 1748 181 31 3 chr13 102696001 102696294 -17048604 + AluJo SINE Alu 1 301 -11 2166 93 31 10 chr13 102696521 102696810 -17048088 - AluSp SINE Alu -18 295 1 1049 233 205 19 chr13 102697430 102697694 -17047204 - Charlie7 DNA MER1_type -332 2280 2066 1417 149 112 41 chr13 102697694 102697963 -17046935 - AluSx SINE Alu -24 288 1 1049 233 205 19 chr13 102697963 102698419 -17046479 - Charlie7 DNA MER1_type -546 2066 1426 2227 112 3 0 chr13 102698665 102698960 -17045938 + AluSq SINE Alu 1 296 -17 363 222 182 0 chr13 102700758 102700857 -17044041 - L2 LINE L2 -2 3311 3195 320 73 0 0 chr13 102701171 102701212 -17043686 + LTR56 LTR ERV1 348 388 -57 31 0 0 0 chr13 102701213 102701244 -17043654 + AT_rich Low_complexity Low_complexity 1 31 0 756 249 126 16 chr13 102701257 102701638 -17043260 - MER20B DNA MER1_type -1 782 360 1030 170 38 28 chr13 102701639 102701739 -17043159 - MER46A DNA MER2_type -1 235 134 237 192 216 32 chr13 102701739 102701864 -17043034 + MER46A DNA MER2_type 4 151 -85 384 220 141 70 chr13 102701869 102702096 -17042802 - MER20B DNA MER1_type -433 350 108 708 195 117 0 chr13 102702589 102702743 -17042155 + FRAM SINE Alu 1 171 -5 384 286 207 23 chr13 102704046 102704184 -17040714 + L1ME LINE L1 4038 4149 -1997 2283 97 3 10 chr13 102704184 102704492 -17040406 + AluSq SINE Alu 1 306 -7 384 286 207 23 chr13 102704492 102704744 -17040154 + L1ME LINE L1 4149 4500 -1646 1865 178 3 0 chr13 102705003 102705301 -17039597 + AluJb SINE Alu 1 299 -13 210 91 0 0 chr13 102705313 102705346 -17039552 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 1580 65 70 17 chr13 102705346 102705576 -17039322 - L1PB1 LINE L1 0 6151 5910 2224 63 3 3 chr13 102705633 102705941 -17038957 + AluY SINE Alu 1 308 0 335 291 61 42 chr13 102706064 102706229 -17038669 + L1ME LINE L1 5108 5275 -871 1499 151 147 4 chr13 102706252 102706510 -17038388 - AluJb SINE Alu -7 295 1 2168 88 35 0 chr13 102706761 102707046 -17037852 - AluY SINE Alu -11 300 6 258 235 136 0 chr13 102707154 102707235 -17037663 + L1ME LINE L1 5713 5804 -358 25 0 0 0 chr13 102707960 102707985 -17036913 + AT_rich Low_complexity Low_complexity 1 25 0 2479 57 0 0 chr13 102708137 102708434 -17036464 - AluY SINE Alu -14 297 1 180 0 0 0 chr13 102708485 102708505 -17036393 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 227 339 62 18 chr13 102708873 102708985 -17035913 - MIR SINE MIR -64 144 28 2175 122 0 0 chr13 102709020 102709316 -17035582 + AluSx SINE Alu 1 296 -16 2367 92 0 3 chr13 102710162 102710468 -17034430 + AluY SINE Alu 1 305 -6 742 182 0 0 chr13 102711212 102711333 -17033565 - FLAM_C SINE Alu -22 121 1 1942 125 42 11 chr13 102711501 102711651 -17033247 - AluSx SINE Alu -16 296 152 2020 150 0 0 chr13 102711651 102711937 -17032961 - AluSx SINE Alu -26 286 1 1942 125 42 11 chr13 102711937 102712073 -17032825 - AluSx SINE Alu -160 152 1 2406 73 0 6 chr13 102712161 102712474 -17032424 - AluY SINE Alu 0 311 1 2205 117 10 0 chr13 102713727 102714034 -17030864 + AluSq SINE Alu 1 310 -3 430 153 399 22 chr13 102714240 102714423 -17030475 - MER5C DNA MER1_type -72 252 1 1866 116 29 4 chr13 102715033 102715356 -17029542 - AluSx SINE Alu 0 330 1 1634 139 49 4 chr13 102715356 102715525 -17029373 - AluSx SINE Alu -11 301 113 396 0 0 0 chr13 102715525 102715569 -17029329 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1634 139 49 4 chr13 102715569 102715665 -17029233 - AluSx SINE Alu -199 113 23 2726 48 0 0 chr13 102716522 102716833 -17028065 - AluY SINE Alu 0 311 1 1703 133 97 25 chr13 102717026 102717305 -17027593 - AluSx SINE Alu -13 299 1 308 325 159 23 chr13 102718392 102718694 -17026204 + L2 LINE L2 1993 2335 -979 235 188 0 21 chr13 102718977 102719025 -17025873 + L2 LINE L2 3262 3308 -5 259 282 19 58 chr13 102719215 102719318 -17025580 + L2 LINE L2 3152 3250 -22 24 32 0 0 chr13 102720003 102720034 -17024864 + AT_rich Low_complexity Low_complexity 1 31 0 191 200 0 0 chr13 102720659 102720699 -17024199 + L2 LINE L2 3197 3236 -77 2016 118 38 0 chr13 102720940 102721229 -17023669 - AluSx SINE Alu -12 300 1 1561 150 8 4 chr13 102721433 102721692 -17023206 - AluJb SINE Alu 0 317 58 2075 107 0 0 chr13 102721692 102721964 -17022934 - AluSg SINE Alu -38 272 1 1087 164 124 69 chr13 102722828 102723103 -17021795 - AluJo SINE Alu -11 291 2 1621 116 4 84 chr13 102723225 102723500 -17021398 - AluSx SINE Alu -21 291 39 1582 140 92 0 chr13 102724452 102724702 -17020196 - AluSx SINE Alu -27 285 13 26 50 0 0 chr13 102724739 102724779 -17020119 + AT_rich Low_complexity Low_complexity 1 40 0 261 0 0 0 chr13 102725409 102725438 -17019460 + (TG)n Simple_repeat Simple_repeat 2 30 0 204 298 18 0 chr13 102725440 102725497 -17019401 + L2 LINE L2 3193 3250 -22 25 31 0 0 chr13 102727620 102727652 -17017246 + AT_rich Low_complexity Low_complexity 1 32 0 1685 87 134 8 chr13 102727703 102727979 -17016919 - AluSg SINE Alu 0 308 1 747 206 19 25 chr13 102727990 102728150 -17016748 - L1MC1 LINE L1 -19 6314 6156 964 104 0 22 chr13 102728212 102728346 -17016552 - AluSg SINE Alu -179 131 1 25 0 0 0 chr13 102728356 102728381 -17016517 + AT_rich Low_complexity Low_complexity 1 25 0 2063 90 61 0 chr13 102729351 102729630 -17015268 - AluY SINE Alu -14 297 2 769 157 0 41 chr13 102730440 102730587 -17014311 - FLAM_C SINE Alu -1 142 2 21 0 0 0 chr13 102733840 102733861 -17011037 + AT_rich Low_complexity Low_complexity 1 21 0 1550 127 0 0 chr13 102735106 102735318 -17009580 - AluSx SINE Alu -100 212 1 1194 207 28 78 chr13 102735321 102735679 -17009219 - L1M4 LINE L1 -1378 4768 4429 3233 202 66 93 chr13 102735683 102736481 -17008417 + L1MD2 LINE L1 5174 5992 -367 1773 107 43 12 chr13 102736481 102736734 -17008164 - AluSx SINE Alu -40 272 12 3233 202 66 93 chr13 102736734 102736923 -17007975 + L1MD2 LINE L1 5992 6137 -222 255 31 0 0 chr13 102736923 102736955 -17007943 + (CA)n Simple_repeat Simple_repeat 2 33 0 3233 202 66 93 chr13 102736955 102737091 -17007807 + L1MD2 LINE L1 6137 6275 -84 2185 101 0 11 chr13 102737420 102737733 -17007165 - AluSx SINE Alu 0 310 1 1165 158 44 97 chr13 102738219 102738248 -17006650 - MER33 DNA MER1_type -2262 323 294 2263 119 0 3 chr13 102738248 102738551 -17006347 + AluSx SINE Alu 1 302 -10 1165 158 44 97 chr13 102738551 102738590 -17006308 - MER33 DNA MER1_type -2291 294 254 1739 113 3 119 chr13 102738590 102738918 -17005980 + AluYa8 SINE Alu 1 290 -20 1165 158 44 97 chr13 102738918 102739189 -17005709 - MER33 DNA MER1_type -2331 254 1 1626 156 56 90 chr13 102739581 102739621 -17005277 - MLT1A1 LTR MaLR 0 365 325 1963 114 26 26 chr13 102739621 102739928 -17004970 + AluSq SINE Alu 1 307 -6 387 0 0 0 chr13 102739928 102739971 -17004927 + (CA)n Simple_repeat Simple_repeat 2 44 0 1626 156 56 90 chr13 102739971 102740307 -17004591 - MLT1A1 LTR MaLR -38 327 1 2183 124 0 0 chr13 102740331 102740622 -17004276 - AluSx SINE Alu -21 291 1 2309 90 0 3 chr13 102741084 102741372 -17003526 + AluSc SINE Alu 1 287 -22 925 193 0 36 chr13 102741691 102741857 -17003041 - FRAM SINE Alu -17 159 1 1684 165 25 11 chr13 102742326 102742611 -17002287 + AluJo SINE Alu 5 293 -19 1812 155 10 14 chr13 102742615 102742911 -17001987 + AluJb SINE Alu 5 299 -13 1649 173 10 13 chr13 102743038 102743339 -17001559 + AluJo SINE Alu 1 300 -12 2101 118 0 3 chr13 102743859 102744178 -17000720 - AluSx SINE Alu 0 318 1 2526 62 0 10 chr13 102744189 102744497 -17000401 - AluY SINE Alu -6 305 1 219 289 78 56 chr13 102745026 102745168 -16999730 - MIR SINE MIR -72 190 46 2235 119 3 3 chr13 102745171 102745482 -16999416 + AluSx SINE Alu 1 311 -1 456 231 46 8 chr13 102745828 102745958 -16998940 - LTR33A LTR ERVL -1 522 388 1166 145 54 9 chr13 102745959 102746180 -16998718 + L1MB3 LINE L1 5803 6033 -150 309 264 72 48 chr13 102746314 102746481 -16998417 + MER113 DNA MER1_type? 6 176 -345 990 127 0 7 chr13 102746481 102746623 -16998275 - FRAM SINE Alu -15 161 21 358 108 46 0 chr13 102746651 102746716 -16998182 + MER113 DNA MER1_type? 177 244 -277 1124 44 0 29 chr13 102746974 102747110 -16997788 - AluY SINE Alu -179 132 1 2662 30 0 13 chr13 102747373 102747678 -16997220 - AluY SINE Alu -10 301 1 1912 165 3 0 chr13 102748131 102748428 -16996470 - AluJb SINE Alu -14 298 1 1779 101 112 4 chr13 102748440 102748707 -16996191 - AluSg SINE Alu -14 296 1 1379 143 101 62 chr13 102749533 102749569 -16995329 + MER65A LTR ERV1 3 36 -409 2120 127 3 0 chr13 102749569 102749860 -16995038 + AluSx SINE Alu 1 292 -20 1379 143 101 62 chr13 102749860 102750131 -16994767 + MER65A LTR ERV1 36 322 -123 623 175 25 17 chr13 102750133 102750253 -16994645 + FLAM_C SINE Alu 20 140 -3 517 179 98 0 chr13 102750263 102750375 -16994523 + MER65A LTR ERV1 323 445 0 296 175 111 0 chr13 102750448 102750511 -16994387 - MIR SINE MIR -34 228 159 2097 83 19 70 chr13 102751002 102751316 -16993582 + AluSc SINE Alu 1 298 -11 434 153 0 0 chr13 102751409 102751481 -16993417 - MIR SINE MIR -91 171 100 502 183 63 131 chr13 102751565 102751740 -16993158 + MER58B DNA MER1_type 179 341 0 2487 44 3 7 chr13 102751956 102752249 -16992649 - AluY SINE Alu -19 292 1 649 162 35 8 chr13 102752625 102752757 -16992141 + L1MC3 LINE L1 5706 5842 -364 778 154 7 22 chr13 102752766 102752902 -16991996 + AluJo SINE Alu 2 135 -177 1919 151 0 3 chr13 102752909 102753194 -16991704 + AluSx SINE Alu 1 284 -28 326 289 0 0 chr13 102753200 102753290 -16991608 + C-rich Low_complexity Low_complexity 5 94 0 1232 35 0 0 chr13 102753290 102753431 -16991467 - AluY SINE Alu -170 141 1 490 182 0 30 chr13 102753481 102753580 -16991318 + FLAM_A SINE Alu 30 125 -17 441 286 43 0 chr13 102753592 102753732 -16991166 + L1MB5 LINE L1 5011 5156 -990 1696 191 7 3 chr13 102753745 102754049 -16990849 - AluSx SINE Alu -7 305 1 1492 210 24 3 chr13 102754056 102754347 -16990551 - AluJo SINE Alu -15 297 1 227 261 38 127 chr13 102754434 102754522 -16990376 + MLT1K LTR MaLR 156 226 -362 2658 118 25 43 chr13 102754522 102755012 -16989886 - MER31A LTR ERV1 -4 481 1 227 261 38 127 chr13 102755012 102755080 -16989818 + MLT1K LTR MaLR 226 298 -290 261 0 0 0 chr13 102755515 102755544 -16989354 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 569 156 25 57 chr13 102755648 102755770 -16989128 + FLAM_C SINE Alu 2 119 -24 251 322 171 0 chr13 102755799 102755945 -16988953 - MIR SINE MIR -6 256 86 1949 120 53 3 chr13 102756041 102756325 -16988573 - AluSx SINE Alu -14 298 1 2665 197 83 33 chr13 102756362 102756976 -16987922 + L1MB5 LINE L1 5518 6162 -12 23 0 0 0 chr13 102756980 102757003 -16987895 + AT_rich Low_complexity Low_complexity 1 23 0 2196 110 0 10 chr13 102757097 102757398 -16987500 - AluSq SINE Alu -15 298 1 2380 75 0 35 chr13 102757674 102757993 -16986905 - AluSq SINE Alu -5 308 1 2318 102 0 0 chr13 102758252 102758555 -16986343 - AluSx SINE Alu -9 303 1 472 221 99 8 chr13 102759355 102759486 -16985412 - MER69 DNA AcHobo -1079 147 5 733 134 0 70 chr13 102759672 102759814 -16985084 - FLAM_C SINE Alu 0 133 2 225 0 0 0 chr13 102759824 102759849 -16985049 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1917 139 3 3 chr13 102759853 102760141 -16984757 - AluJb SINE Alu -24 288 1 1916 143 0 4 chr13 102760151 102760430 -16984468 - AluSx SINE Alu -6 306 29 392 256 103 13 chr13 102760508 102760664 -16984234 - L1MC5 LINE L1 -68 7893 7724 187 250 159 0 chr13 102760861 102760949 -16983949 - L2 LINE L2 -28 3244 3143 2075 106 0 11 chr13 102761281 102761563 -16983335 - AluSx SINE Alu -33 279 1 2128 148 0 0 chr13 102761596 102761907 -16982991 - AluSx SINE Alu -1 311 1 1991 138 13 33 chr13 102761932 102762236 -16982662 + AluSx SINE Alu 1 298 -14 2398 102 0 3 chr13 102762323 102762636 -16982262 + AluSp SINE Alu 1 312 -1 1109 71 6 60 chr13 102762636 102762804 -16982094 + Tigger1 DNA MER2_type 2080 2238 -180 1305 128 18 5 chr13 102762808 102763027 -16981871 - MER75B DNA T2_type -4 239 18 428 115 0 0 chr13 102763037 102763098 -16981800 - AluS SINE Alu -256 62 2 2417 275 37 43 chr13 102763100 102763850 -16981048 - L1MC4a LINE L1 -748 5398 5202 1991 168 0 13 chr13 102763850 102764166 -16980732 - AluJb SINE Alu 0 312 1 2417 275 37 43 chr13 102764166 102764933 -16979965 - L1MC4a LINE L1 -944 5202 4432 1177 208 29 18 chr13 102764943 102765222 -16979676 - LTR53 LTR ERVL -11 508 227 2717 46 0 0 chr13 102765335 102765642 -16979256 - AluY SINE Alu -4 307 1 268 155 17 0 chr13 102765659 102765717 -16979181 - L1 LINE L1 -1716 4430 4372 281 282 79 86 chr13 102766266 102766685 -16978213 - L2 LINE L2 0 3272 2857 477 274 0 0 chr13 102767497 102767822 -16977076 + (TG)n Simple_repeat Simple_repeat 1 325 0 1259 168 70 4 chr13 102768132 102768376 -16976522 - L1PB4 LINE L1 -2 6154 5895 2365 84 3 13 chr13 102768718 102769028 -16975870 + AluSq SINE Alu 1 307 -6 1695 168 3 39 chr13 102769106 102769415 -16975483 + AluJo SINE Alu 1 298 -14 2413 70 0 13 chr13 102769445 102769747 -16975151 + AluY SINE Alu 1 298 -13 189 0 0 0 chr13 102769747 102769768 -16975130 + (TA)n Simple_repeat Simple_repeat 2 22 0 512 248 7 22 chr13 102769823 102769960 -16974938 - MIR SINE MIR -24 238 104 251 212 54 3 chr13 102770108 102770164 -16974734 + MLT1K LTR MaLR 140 263 -325 5251 104 18 28 chr13 102771424 102772211 -16972687 + MER4E LTR ERV1 1 779 0 1387 146 88 127 chr13 102772477 102772943 -16971955 - LTR7 LTR ERV1 -2 448 1 26 30 0 0 chr13 102773001 102773034 -16971864 + AT_rich Low_complexity Low_complexity 1 33 0 2305 95 10 0 chr13 102773039 102773345 -16971553 + AluSq SINE Alu 1 309 -4 180 111 0 0 chr13 102773393 102773420 -16971478 + (A)n Simple_repeat Simple_repeat 1 27 0 465 217 78 0 chr13 102773655 102773770 -16971128 - L1M4 LINE L1 -2385 3761 3638 216 136 23 23 chr13 102773806 102773850 -16971048 + CT-rich Low_complexity Low_complexity 4 47 0 1139 172 221 23 chr13 102773854 102774244 -16970654 - LTR54B LTR ERV1 -6 492 26 411 73 0 0 chr13 102774255 102774310 -16970588 + (TCCCC)n Simple_repeat Simple_repeat 2 56 0 2703 10 0 0 chr13 102774321 102774622 -16970276 - AluYb8 SINE Alu -17 301 1 319 347 46 63 chr13 102774624 102774863 -16970035 - L1ME LINE L1 -5516 554 320 321 157 137 1 chr13 102775229 102775267 -16969631 - AluS SINE Alu -234 66 35 2146 81 0 3 chr13 102775267 102775551 -16969347 - AluSc SINE Alu 0 309 27 * 2775 10 0 0 chr13 102775549 102775859 -16969039 - AluYa5 SINE Alu -1 310 1 321 157 137 1 chr13 102775859 102775899 -16968999 - AluS SINE Alu -573 4294967023 1 2946 130 93 26 chr13 102775973 102776511 -16968387 - MER4B LTR ERV1 -36 574 1 2282 89 0 10 chr13 102776721 102777034 -16967864 - AluSg SINE Alu 0 310 1 791 99 0 0 chr13 102777214 102777315 -16967583 + THE1C LTR MaLR 1 101 -274 744 90 0 10 chr13 102777314 102777414 -16967484 + THE1C LTR MaLR 266 364 0 * 223 253 76 25 chr13 102777768 102777847 -16967051 - MIR SINE MIR 0 262 180 2076 123 7 0 chr13 102777971 102778272 -16966626 - AluSx SINE Alu -9 303 1 21 0 0 0 chr13 102778491 102778512 -16966386 + AT_rich Low_complexity Low_complexity 1 21 0 1638 164 7 17 chr13 102778633 102778920 -16965978 + AluJb SINE Alu 1 284 -28 260 229 24 108 chr13 102778940 102779104 -16965794 - L1PA8A LINE L1 -312 5809 5659 226 343 14 14 chr13 102779298 102779438 -16965460 + L2 LINE L2 2834 2973 -299 1882 157 39 55 chr13 102779442 102779633 -16965265 + THE1B LTR MaLR 1 185 -179 2798 7 0 0 chr13 102779633 102779943 -16964955 - AluYb8 SINE Alu -8 310 1 1882 157 39 55 chr13 102779943 102780114 -16964784 + THE1B LTR MaLR 185 357 -7 364 350 46 67 chr13 102780114 102780154 -16964744 + L2 LINE L2 2994 3033 -239 2003 82 26 30 chr13 102780154 102780457 -16964441 - AluSp SINE Alu -6 307 6 364 350 46 67 chr13 102780457 102780699 -16964199 + L2 LINE L2 3033 3270 -2 1728 165 0 32 chr13 102781058 102781373 -16963525 + AluJo SINE Alu 1 305 -7 1980 114 7 17 chr13 102781413 102781710 -16963188 + AluSx SINE Alu 1 294 -18 297 316 128 28 chr13 102781726 102781944 -16962954 - MIR SINE MIR -14 248 9 452 182 11 0 chr13 102782453 102782541 -16962357 - FLAM SINE Alu -11 132 44 1720 134 31 3 chr13 102782781 102783072 -16961826 + AluSx SINE Alu 1 299 -13 597 233 96 7 chr13 102783258 102783404 -16961494 + LTR41 LTR ERVL 2 160 -613 1590 198 67 17 chr13 102783408 102783752 -16961146 + MLT1A1 LTR MaLR 1 361 -4 766 243 16 92 chr13 102783913 102784218 -16960680 + LTR41 LTR ERVL 486 767 -6 2027 109 0 0 chr13 102784272 102784548 -16960350 - AluSc SINE Alu -32 277 2 416 271 234 0 chr13 102784548 102784736 -16960162 - MIR SINE MIR -20 242 11 2093 77 0 64 chr13 102784769 102785080 -16959818 + AluY SINE Alu 1 291 -20 1517 232 11 41 chr13 102785716 102786083 -16958815 - L1M4 LINE L1 -6171 371 16 4127 99 152 147 chr13 102786099 102787476 -16957422 - pTR5 LTR ERV1 0 2438 743 1948 273 83 46 chr13 102788005 102788078 -16956820 - HAL1 LINE L1 -2 2505 2436 1590 189 19 3 chr13 102788078 102788385 -16956513 + AluJo SINE Alu 1 312 0 1948 273 83 46 chr13 102788385 102788881 -16956017 - HAL1 LINE L1 -71 2436 1889 2024 138 6 3 chr13 102788881 102789192 -16955706 - AluSx SINE Alu 0 312 1 1948 273 83 46 chr13 102789192 102789512 -16955386 - HAL1 LINE L1 -618 1889 1582 237 65 0 0 chr13 102790131 102790162 -16954736 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1901 132 3 14 chr13 102790164 102790316 -16954582 - AluSq SINE Alu -29 284 135 2090 120 0 0 chr13 102790316 102790616 -16954282 - AluSx SINE Alu -12 300 1 1901 132 3 14 chr13 102790616 102790750 -16954148 - AluSq SINE Alu -178 135 1 199 218 91 0 chr13 102791182 102791237 -16953661 + MIR SINE MIR 89 148 -60 1930 137 3 26 chr13 102791527 102791840 -16953058 + AluJb SINE Alu 1 306 -6 513 200 35 183 chr13 102792282 102792436 -16952462 - MIR SINE MIR -3 259 166 2282 86 0 0 chr13 102792436 102792740 -16952158 - AluSg SINE Alu -6 304 1 513 200 35 183 chr13 102792740 102792875 -16952023 - MIR SINE MIR -96 166 13 756 111 0 0 chr13 102792878 102793004 -16951894 + (CA)n Simple_repeat Simple_repeat 1 126 0 1598 168 152 3 chr13 102793308 102793623 -16951275 + MLT1A1 LTR MaLR 4 365 0 2276 93 3 0 chr13 102793880 102794180 -16950718 - AluSx SINE Alu -11 301 1 330 242 57 105 chr13 102794503 102794627 -16950271 - MER5A DNA MER1_type -6 183 66 199 250 223 27 chr13 102794554 102794666 -16950232 + MER5A DNA MER1_type 56 189 0 * 1927 121 7 10 chr13 102794870 102795168 -16949730 + AluSx SINE Alu 1 297 -15 513 296 55 36 chr13 102795197 102795450 -16949448 + MIR SINE MIR 5 262 0 295 309 82 18 chr13 102795482 102795592 -16949306 - MIR SINE MIR -67 141 25 1781 134 3 14 chr13 102796098 102796411 -16948487 - AluSx SINE Alu 0 310 1 980 81 0 0 chr13 102796544 102796667 -16948231 + AluSg SINE Alu 1 123 -187 467 229 155 74 chr13 102797291 102797533 -16947365 + L3 LINE CR1 816 1037 -540 378 61 0 0 chr13 102797533 102797582 -16947316 + (TA)n Simple_repeat Simple_repeat 1 49 0 2270 80 0 0 chr13 102797582 102797869 -16947029 - AluY SINE Alu -24 287 1 467 229 155 74 chr13 102797869 102797896 -16947002 + L3 LINE CR1 1036 1108 -469 556 304 76 69 chr13 102797922 102798383 -16946515 + LTR16B LTR ERVL 1 464 0 327 280 129 30 chr13 102798491 102798623 -16946275 + MIR3 SINE MIR 16 160 -48 1627 141 4 15 chr13 102798654 102798917 -16945981 - AluSx SINE Alu -52 260 1 345 324 129 0 chr13 102799126 102799296 -16945602 + L3 LINE CR1 1248 1439 -138 1059 195 55 41 chr13 102799296 102799588 -16945310 - MLT1B LTR MaLR 0 390 172 620 216 9 9 chr13 102799588 102799704 -16945194 - FLAM_A SINE Alu -17 116 1 1059 195 55 41 chr13 102799704 102799879 -16945019 - MLT1B LTR MaLR -218 172 1 643 239 5 64 chr13 102799993 102800181 -16944717 - LTR16C LTR ERVL 0 491 315 342 0 0 0 chr13 102800868 102800906 -16943992 + (TG)n Simple_repeat Simple_repeat 2 39 0 578 219 59 27 chr13 102801620 102801807 -16943091 + L1ME3 LINE L1 5770 5962 -200 1912 113 0 30 chr13 102802617 102802918 -16941980 - AluSx SINE Alu -20 292 1 1833 111 59 123 chr13 102803539 102803928 -16940970 - THE1B LTR MaLR 0 364 1 504 274 96 0 chr13 102803945 102804133 -16940765 + MER115 DNA AcHobo 490 4031 0 2105 120 0 9 chr13 102804219 102804535 -16940363 - AluSq SINE Alu 0 313 1 1858 190 39 59 chr13 102804597 102804963 -16939935 - MLT1C LTR MaLR -19 448 91 2177 129 0 0 chr13 102804963 102805274 -16939624 - AluSx SINE Alu -1 311 1 1858 190 39 59 chr13 102805274 102805364 -16939534 - MLT1C LTR MaLR -376 91 1 245 301 41 0 chr13 102805721 102805782 -16939116 + MIR SINE MIR 48 111 -97 285 228 61 70 chr13 102805782 102805896 -16939002 - MER5A DNA MER1_type 0 189 77 204 40 0 0 chr13 102805906 102805931 -16938967 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2050 117 0 0 chr13 102805948 102806231 -16938667 - AluSg SINE Alu -27 283 1 436 169 169 16 chr13 102806234 102806287 -16938611 - L1MB2 LINE L1 -346 5825 5781 195 42 0 0 chr13 102806287 102806311 -16938587 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 436 169 169 16 chr13 102806311 102806381 -16938517 - L1MB2 LINE L1 -390 5781 5683 2240 95 0 7 chr13 102807013 102807317 -16937581 - AluSx SINE Alu -10 302 1 437 209 48 9 chr13 102807323 102807428 -16937470 + MER34 LTR ERV1 432 540 -2 497 244 7 37 chr13 102807430 102807565 -16937333 - MER74B LTR ERVL -442 180 50 1562 182 3 10 chr13 102807862 102808153 -16936745 - AluJo SINE Alu -23 289 1 478 199 150 66 chr13 102808843 102809069 -16935829 + L1MC5 LINE L1 6924 7168 -793 362 184 11 23 chr13 102809065 102809152 -16935746 - L1MC5 LINE L1 -218 7743 7658 * 1428 238 77 62 chr13 102809171 102809521 -16935377 + L1MC5 LINE L1 7174 7517 -444 2399 56 0 10 chr13 102809521 102809825 -16935073 + AluY SINE Alu 1 301 -10 1428 238 77 62 chr13 102809825 102810007 -16934891 + L1MC5 LINE L1 7517 7695 -266 186 43 0 0 chr13 102810007 102810030 -16934868 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 1428 238 77 62 chr13 102810030 102810148 -16934750 + L1MC5 LINE L1 7695 7810 -151 3061 120 14 2 chr13 102810148 102810591 -16934307 + MER83 LTR ERV1 1 448 0 1428 238 77 62 chr13 102810591 102810683 -16934215 + L1MC5 LINE L1 7810 7929 -32 1727 175 3 19 chr13 102810686 102811001 -16933897 + AluSx SINE Alu 1 310 -2 2042 119 0 0 chr13 102811928 102812250 -16932648 - AluSx SINE Alu 0 322 1 2234 89 0 0 chr13 102813107 102813399 -16931499 - AluSg SINE Alu -18 292 1 965 104 0 7 chr13 102813399 102813534 -16931364 - AluSq/x SINE Alu -177 135 2 3769 199 62 21 chr13 102813671 102814462 -16930436 - MER21B LTR ERV1 -22 841 19 280 174 29 43 chr13 102814495 102814564 -16930334 - MER21B LTR ERV1 -795 68 1 540 293 115 48 chr13 102814574 102814974 -16929924 + L3 LINE CR1 398 824 -753 1986 205 107 12 chr13 102814976 102815488 -16929410 - MER74B LTR ERVL -1 621 61 269 231 0 0 chr13 102815673 102815725 -16929173 + L2 LINE L2 3009 3060 -253 1441 122 25 149 chr13 102815767 102815818 -16929080 - MER61C LTR ERV1 0 434 378 3116 153 27 54 chr13 102815818 102816295 -16928603 + LTR9 LTR ERV1 1 489 -123 189 0 0 0 chr13 102816295 102816316 -16928582 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 225 0 0 0 chr13 102816315 102816340 -16928558 + (CA)n Simple_repeat Simple_repeat 1 25 0 3116 153 27 54 chr13 102816316 102816491 -16928407 + LTR9 LTR ERV1 489 612 0 1441 122 25 149 chr13 102816491 102816835 -16928063 - MER61C LTR ERV1 -56 378 1 567 231 172 43 chr13 102816838 102817024 -16927874 + L2 LINE L2 3104 3313 0 383 281 94 55 chr13 102817040 102817275 -16927623 + L3 LINE CR1 966 1209 -368 212 317 0 0 chr13 102817263 102817323 -16927575 - L2 LINE L2 -12 3260 3201 * 2788 125 31 5 chr13 102817517 102817932 -16926966 - MSTB LTR MaLR 0 426 1 1843 156 28 97 chr13 102818147 102818287 -16926611 + MLT2C1 LTR ERVL 1 149 -248 1747 160 140 9 chr13 102818287 102818637 -16926261 + MSTD LTR MaLR 1 396 0 1843 156 28 97 chr13 102818637 102818920 -16925978 + MLT2C1 LTR ERVL 149 395 -2 218 312 64 37 chr13 102818994 102819103 -16925795 + L2 LINE L2 2968 3079 -193 209 246 53 0 chr13 102819171 102819228 -16925670 + L2 LINE L2 3247 3306 -7 1477 100 44 20 chr13 102819301 102819498 -16925400 - L1MA5A LINE L1 -4 6293 6087 5033 84 20 25 chr13 102819498 102820189 -16924709 - LTR12 LTR ERV1 0 688 1 1477 100 44 20 chr13 102820189 102820240 -16924658 - L1MA5A LINE L1 -210 6087 6039 1404 90 9 14 chr13 102820240 102820451 -16924447 + L1MA5A LINE L1 5840 6049 -248 1897 135 3 0 chr13 102820936 102821224 -16923674 - AluSx SINE Alu -18 294 6 307 225 28 38 chr13 102821494 102821579 -16923319 - MLT1A2 LTR MaLR -119 271 173 330 115 0 0 chr13 102821579 102821640 -16923258 + (GA)n Simple_repeat Simple_repeat 2 62 0 866 195 18 12 chr13 102821643 102821812 -16923086 - MLT1A2 LTR MaLR -200 174 5 506 245 82 79 chr13 102822384 102822419 -16922479 + L2 LINE L2 2776 2809 -504 2706 197 37 2 chr13 102822419 102822962 -16921936 + MER68 LTR ERV1 1 562 0 506 245 82 79 chr13 102822962 102823145 -16921753 + L2 LINE L2 2809 2990 -323 1524 205 90 78 chr13 102823145 102823330 -16921568 - MLT2B1 LTR ERVL 0 520 339 1854 142 0 19 chr13 102823330 102823639 -16921259 + AluJb SINE Alu 5 307 -5 1524 205 90 78 chr13 102823639 102823966 -16920932 - MLT2B1 LTR ERVL -181 339 2 506 245 82 79 chr13 102823966 102824070 -16920828 + L2 LINE L2 2990 3092 -221 2229 87 3 3 chr13 102824070 102824379 -16920519 - AluY SINE Alu -2 309 1 506 245 82 79 chr13 102824379 102824461 -16920437 + L2 LINE L2 3092 3235 -78 241 263 82 60 chr13 102824672 102824773 -16920125 - L1MC5 LINE L1 -34 7927 7830 1433 181 3 90 chr13 102824773 102825094 -16919804 + AluJo SINE Alu 1 293 -9 2210 60 0 7 chr13 102825103 102825384 -16919514 + AluY SINE Alu 3 281 -30 241 263 82 60 chr13 102825384 102825709 -16919189 - L1MC5 LINE L1 -138 7823 7481 219 290 60 10 chr13 102826132 102826232 -16918666 + MIR SINE MIR 39 143 -65 1453 88 36 0 chr13 102826481 102826675 -16918223 - AluSc SINE Alu -108 201 1 1883 213 42 18 chr13 102826925 102827375 -16917523 + MLT1C LTR MaLR 7 467 0 2135 100 3 3 chr13 102827441 102827741 -16917157 - AluSg SINE Alu -8 302 3 1290 86 11 0 chr13 102827743 102827918 -16916980 - AluSg/x SINE Alu -2 308 132 2271 92 0 3 chr13 102827918 102828221 -16916677 - AluSq SINE Alu -11 302 1 4317 172 10 35 chr13 102828292 102828923 -16915975 - LTR39 LTR ERV1 0 783 175 2047 93 31 0 chr13 102828923 102829212 -16915686 - AluY SINE Alu -13 298 1 4317 172 10 35 chr13 102829212 102829383 -16915515 - LTR39 LTR ERV1 -608 175 1 1801 133 0 0 chr13 102829400 102829670 -16915228 + AluSx SINE Alu 2 271 -41 330 26 0 0 chr13 102829680 102829719 -16915179 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 846 126 0 0 chr13 102830103 102830222 -16914676 + AluSq/x SINE Alu 15 133 -179 2281 59 13 16 chr13 102830239 102830545 -16914353 - AluY SINE Alu -6 305 1 2100 114 0 7 chr13 102830555 102830862 -16914036 - AluSx SINE Alu -7 305 1 314 284 65 52 chr13 102830873 102831028 -16913870 - MIR SINE MIR -42 220 64 196 246 88 0 chr13 102831792 102831849 -16913049 - MIR SINE MIR -110 152 91 1584 177 35 0 chr13 102831875 102832163 -16912735 + AluJb SINE Alu 1 298 -14 2344 138 13 13 chr13 102832637 102833027 -16911871 + MLT1B LTR MaLR 1 390 0 414 256 108 8 chr13 102833201 102833330 -16911568 + L2 LINE L2 2093 2234 -1080 1743 152 17 116 chr13 102833330 102833429 -16911469 - MLT1A2 LTR MaLR 0 374 267 2192 143 55 24 chr13 102833429 102833848 -16911050 + MSTB1 LTR MaLR 1 432 0 1743 152 17 116 chr13 102833848 102834163 -16910735 - MLT1A2 LTR MaLR -107 267 1 1588 256 88 71 chr13 102834167 102834244 -16910654 + L2 LINE L2 2234 2308 -1005 2641 102 16 5 chr13 102834244 102834615 -16910283 + THE1C LTR MaLR 1 375 0 1588 256 88 71 chr13 102834615 102835385 -16909513 + L2 LINE L2 2308 3114 -199 1746 154 14 0 chr13 102835385 102835671 -16909227 - AluJo SINE Alu -12 300 11 1588 256 88 71 chr13 102835671 102835875 -16909023 + L2 LINE L2 3114 3313 0 629 176 199 56 chr13 102835932 102836085 -16908813 + MLT1D LTR MaLR 2 196 -309 2279 47 18 0 chr13 102836085 102836363 -16908535 + AluY SINE Alu 23 305 -6 629 176 199 56 chr13 102836363 102836425 -16908473 + MLT1D LTR MaLR 196 248 -257 553 215 2 11 chr13 102836476 102836614 -16908284 + MLT1D LTR MaLR 250 501 -4 1813 126 0 58 chr13 102837013 102837323 -16907575 - AluJb SINE Alu -10 302 11 180 0 0 0 chr13 102837343 102837363 -16907535 + (T)n Simple_repeat Simple_repeat 1 20 0 4524 126 40 39 chr13 102837399 102837610 -16907288 + Tigger3b DNA MER2_type 1 210 -2818 2409 61 0 0 chr13 102837610 102837906 -16906992 + AluY SINE Alu 1 296 -15 4524 126 40 39 chr13 102837906 102838448 -16906450 + Tigger3b DNA MER2_type 210 750 -2278 2073 96 25 0 chr13 102838448 102838730 -16906168 - AluSg SINE Alu -21 289 1 4524 126 40 39 chr13 102838730 102838757 -16906141 + Tigger3b DNA MER2_type 750 775 -2253 1925 160 53 8 chr13 102838757 102839113 -16905785 + THE1C LTR MaLR 4 375 0 4524 126 40 39 chr13 102839113 102839154 -16905744 + Tigger3b DNA MER2_type 775 825 -406 2012 113 21 82 chr13 102839154 102839471 -16905427 + THE1B LTR MaLR 1 293 -71 2116 92 20 0 chr13 102839471 102839766 -16905132 + AluSg SINE Alu 1 301 -9 2012 113 21 82 chr13 102839766 102839827 -16905071 + THE1B LTR MaLR 293 356 -8 * 2647 138 5 12 chr13 102839826 102840238 -16904660 + Tigger3b DNA MER2_type 823 1231 0 2429 77 3 0 chr13 102842203 102842514 -16902384 + AluSp SINE Alu 1 312 -1 1440 95 0 33 chr13 102843099 102843310 -16901588 - AluSg/x SINE Alu -20 292 89 1927 100 0 82 chr13 102843314 102843643 -16901255 - AluSg1 SINE Alu -7 302 1 1122 260 55 43 chr13 102843643 102844059 -16900839 + L1MC4a LINE L1 5436 5856 -1952 780 219 6 33 chr13 102844545 102844728 -16900170 + MER5B DNA MER1_type 1 178 0 2488 150 66 66 chr13 102845190 102845274 -16899624 - L1MB7 LINE L1 -9 6175 6092 2002 112 14 0 chr13 102845274 102845560 -16899338 + AluSx SINE Alu 6 295 -17 2488 150 66 66 chr13 102845560 102846023 -16898875 - L1MB7 LINE L1 -91 6093 5628 2238 90 0 3 chr13 102846152 102846451 -16898447 - AluSx SINE Alu -14 298 1 652 230 54 14 chr13 102846780 102846928 -16897970 + MIR SINE MIR 1 154 -108 774 106 0 0 chr13 102846969 102847073 -16897825 - AluSg/x SINE Alu -15 294 191 255 279 63 40 chr13 102847102 102847324 -16897574 + L1MC/D LINE L1 4589 4815 -1331 468 282 144 34 chr13 102847422 102847780 -16897118 + L1MC/D LINE L1 4937 5339 -807 2172 109 0 0 chr13 102847861 102848163 -16896735 + AluSg SINE Alu 3 304 -6 1590 236 120 46 chr13 102848237 102848779 -16896119 - MLT1G LTR MaLR -8 582 1 231 225 14 42 chr13 102848805 102848876 -16896022 + L1MC/D LINE L1 5564 5632 -2176 1131 220 181 52 chr13 102849240 102849575 -16895323 - MLT1F1 LTR MaLR -7 560 153 2384 62 0 0 chr13 102849575 102849866 -16895032 + AluSg1 SINE Alu 1 291 -18 1131 220 181 52 chr13 102849866 102849971 -16894927 - MLT1F1 LTR MaLR -414 153 63 812 176 0 7 chr13 102850634 102850776 -16894122 + FRAM SINE Alu 1 141 -35 2294 77 0 0 chr13 102850776 102851073 -16893825 - AluY SINE Alu -14 297 1 201 282 0 70 chr13 102851120 102851191 -16893707 - MIR3 SINE MIR -9 199 134 2248 95 0 16 chr13 102851550 102851867 -16893031 - AluSx SINE Alu 0 312 1 425 208 352 0 chr13 102851916 102852041 -16892857 + MER5A DNA MER1_type 15 183 -6 489 186 236 0 chr13 102852057 102852197 -16892701 - MER5B DNA MER1_type -5 173 1 875 198 54 0 chr13 102852207 102852374 -16892524 + MER5A DNA MER1_type 3 178 -11 437 198 36 36 chr13 102852365 102852476 -16892422 - MER5A DNA MER1_type -76 113 3 * 212 83 0 28 chr13 102853575 102853611 -16891287 + (CGGGG)n Simple_repeat Simple_repeat 4 38 0 23 54 0 0 chr13 102853666 102853703 -16891195 + GC_rich Low_complexity Low_complexity 1 37 0 27 87 0 0 chr13 102853754 102853823 -16891075 + GC_rich Low_complexity Low_complexity 1 69 0 22 35 0 0 chr13 102853991 102854020 -16890878 + GC_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr13 102854028 102854061 -16890837 + GC_rich Low_complexity Low_complexity 1 33 0 32 43 0 0 chr13 102854153 102854199 -16890699 + GC_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr13 102854701 102854726 -16890172 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr13 102854838 102854863 -16890035 + (TG)n Simple_repeat Simple_repeat 2 26 0 2061 110 30 0 chr13 102856224 102856524 -16888374 + AluSx SINE Alu 1 309 -3 2145 99 3 0 chr13 102856871 102857164 -16887734 - AluSp SINE Alu -19 294 1 889 139 33 67 chr13 102858338 102858518 -16886380 - AluJo SINE Alu -55 257 84 2231 87 3 0 chr13 102858738 102859037 -16885861 + AluSp SINE Alu 6 305 -8 344 280 130 30 chr13 102859194 102859394 -16885504 - L1MEc LINE L1 -4465 2075 1856 267 185 151 5 chr13 102859446 102859511 -16885387 - L1MEc LINE L1 -4923 1798 1744 1812 163 0 6 chr13 102859511 102859824 -16885074 - AluJb SINE Alu -1 311 1 267 185 151 5 chr13 102859824 102859840 -16885058 - L1MEc LINE L1 -4977 1744 1522 253 241 36 12 chr13 102859840 102859923 -16884975 + CT-rich Low_complexity Low_complexity 3 87 0 1464 217 154 7 chr13 102859927 102860356 -16884542 - L1ME2 LINE L1 -335 5829 5338 2469 62 0 0 chr13 102860366 102860673 -16884225 - AluY SINE Alu -4 307 1 2003 106 28 3 chr13 102860683 102860966 -16883932 - AluSx SINE Alu -21 291 2 277 150 17 0 chr13 102860999 102861059 -16883839 - L1MA10 LINE L1 0 6334 6274 * 450 221 64 7 chr13 102861056 102861196 -16883702 - L1ME2 LINE L1 -842 5304 5157 631 208 192 0 chr13 102861624 102861754 -16883144 + Tigger7 DNA MER2_type 17 171 -2316 1273 178 74 4 chr13 102861758 102862016 -16882882 + Tigger7 DNA MER2_type 2309 2584 -3 2358 86 0 0 chr13 102862297 102862598 -16882300 - AluSx SINE Alu -11 301 1 347 283 53 0 chr13 102862769 102862882 -16882016 - MLT1L LTR MaLR -134 481 363 258 237 161 84 chr13 102863076 102863325 -16881573 + MLT1L LTR MaLR 348 615 0 337 98 71 0 chr13 102863910 102864022 -16880876 + (TA)n Simple_repeat Simple_repeat 1 120 0 327 235 106 30 chr13 102864029 102864161 -16880737 - L1MCa LINE L1 -4363 2063 1922 325 253 44 22 chr13 102864105 102864196 -16880702 + L1MC4 LINE L1 6613 6705 -1337 * 237 312 37 0 chr13 102864196 102864214 -16880684 - L1MA10 LINE L1 -48 6286 5984 1932 126 7 0 chr13 102864214 102864499 -16880399 - AluSq SINE Alu -26 287 1 1536 218 106 15 chr13 102864504 102865020 -16879878 - L1ME1 LINE L1 -63 6103 5423 846 227 50 62 chr13 102865409 102865567 -16879331 - MLT1F LTR MaLR -8 534 376 708 168 35 0 chr13 102865567 102865680 -16879218 + FLAM_A SINE Alu 1 117 -16 846 227 50 62 chr13 102865680 102865701 -16879197 - MLT1F LTR MaLR -166 376 356 2241 82 13 0 chr13 102865701 102866004 -16878894 + AluSp SINE Alu 1 307 -6 846 227 50 62 chr13 102866004 102866142 -16878756 - MLT1F LTR MaLR -186 356 218 1744 150 13 19 chr13 102866142 102866455 -16878443 - AluJb SINE Alu -1 311 1 846 227 50 62 chr13 102866455 102866615 -16878283 - MLT1F LTR MaLR -324 218 1 285 264 132 33 chr13 102866615 102866736 -16878162 + MIR SINE MIR 28 160 -102 1322 205 40 4 chr13 102867057 102867335 -16877563 - AluJo SINE Alu -24 288 1 829 130 30 0 chr13 102867364 102867495 -16877403 - AluJo SINE Alu -177 135 1 484 216 27 9 chr13 102868268 102868379 -16876519 - MIR SINE MIR -109 153 41 361 231 51 0 chr13 102868408 102868486 -16876412 + L2 LINE L2 3227 3308 -5 357 219 123 35 chr13 102868718 102868832 -16876066 + L1ME4a LINE L1 5994 6117 -4 345 247 233 27 chr13 102869825 102869971 -16874927 - MIR SINE MIR -27 235 60 704 188 75 0 chr13 102870048 102870092 -16874806 - MER96B DNA MER1_type? -238 179 140 2183 108 3 6 chr13 102870092 102870406 -16874492 - AluSp SINE Alu 0 313 1 704 188 75 0 chr13 102870406 102870521 -16874377 - MER96B DNA MER1_type? -277 140 8 21 0 0 0 chr13 102871088 102871109 -16873789 + AT_rich Low_complexity Low_complexity 1 21 0 1961 100 6 59 chr13 102871292 102871613 -16873285 - AluSx SINE Alu -8 304 1 459 175 140 9 chr13 102871632 102871746 -16873152 - L1MC1 LINE L1 0 6333 6205 2270 90 0 3 chr13 102871851 102872151 -16872747 - AluSq SINE Alu -13 300 2 183 204 0 0 chr13 102872366 102872410 -16872488 + CT-rich Low_complexity Low_complexity 1 44 0 1447 198 16 10 chr13 102872410 102872713 -16872185 - AluJo SINE Alu -7 305 1 257 321 12 0 chr13 102873044 102873128 -16871770 + L2 LINE L2 3224 3308 -5 4155 124 39 0 chr13 102873461 102874097 -16870801 + L1PA14 LINE L1 5497 6157 -4 714 130 0 0 chr13 102874178 102874278 -16870620 - AluSg/x SINE Alu -18 294 195 2426 67 0 0 chr13 102874344 102874644 -16870254 - AluSq SINE Alu -13 300 1 1034 89 0 0 chr13 102875433 102875568 -16869330 + AluSq/x SINE Alu 1 135 -178 2111 131 0 0 chr13 102875568 102875874 -16869024 + AluSx SINE Alu 1 306 -6 2079 108 26 7 chr13 102876349 102876655 -16868243 - AluSx SINE Alu 0 312 1 445 291 169 26 chr13 102876683 102876996 -16867902 - L1MC1 LINE L1 -1885 5923 5566 1016 225 44 13 chr13 102877043 102877270 -16867628 - MIR SINE MIR -21 241 8 437 263 28 108 chr13 102877301 102877350 -16867548 - L1MC1 LINE L1 -2319 5489 5438 1662 182 0 13 chr13 102877350 102877663 -16867235 - AluJb SINE Alu -3 309 1 437 263 28 108 chr13 102877663 102877864 -16867034 - L1MC1 LINE L1 -2370 5438 5259 322 284 86 9 chr13 102877863 102877979 -16866919 - L1MC1 LINE L1 -846 5300 5176 * 2056 123 0 13 chr13 102878036 102878346 -16866552 - AluSx SINE Alu -6 306 1 2499 64 0 0 chr13 102878527 102878838 -16866060 + AluY SINE Alu 1 311 0 585 239 115 51 chr13 102878915 102879246 -16865652 - HAL1 LINE L1 -401 2106 1755 336 265 187 42 chr13 102879250 102879416 -16865482 - HAL1 LINE L1 -677 1830 1641 852 255 127 82 chr13 102879563 102880080 -16864818 - HAL1 LINE L1 -336 2171 1612 716 191 0 0 chr13 102880080 102880195 -16864703 + FLAM_A SINE Alu 1 115 -18 852 255 127 82 chr13 102880195 102880384 -16864514 - HAL1 LINE L1 -895 1612 1433 761 271 120 56 chr13 102880537 102880824 -16864074 - HAL1 LINE L1 -1267 1240 973 2102 113 0 13 chr13 102880824 102880987 -16863911 - AluSx SINE Alu -16 296 137 2200 105 0 0 chr13 102880987 102881292 -16863606 - AluY SINE Alu -6 305 1 2102 113 0 13 chr13 102881292 102881428 -16863470 - AluSx SINE Alu -175 137 1 761 271 120 56 chr13 102881428 102881800 -16863098 - HAL1 LINE L1 -1534 973 539 309 313 133 13 chr13 102882102 102882252 -16862646 - HAL1 LINE L1 -2339 168 1 255 206 44 0 chr13 102884690 102884758 -16860140 + L1ME4a LINE L1 5933 6003 -118 860 184 179 9 chr13 102885362 102885574 -16859324 - MIR SINE MIR -1 261 14 2538 165 36 61 chr13 102886170 102886729 -16858169 - L1MB2 LINE L1 -5 6166 5622 2043 135 0 0 chr13 102888001 102888312 -16856586 + AluSx SINE Alu 1 311 -1 304 221 74 11 chr13 102888539 102888634 -16856264 - L1ME4a LINE L1 -48 6073 5973 2236 102 0 6 chr13 102888819 102889132 -16855766 - AluSx SINE Alu -1 311 1 238 179 75 0 chr13 102889252 102889319 -16855579 - HAL1 LINE L1 -191 2316 2245 1002 282 80 80 chr13 102889489 102889697 -16855201 - HAL1 LINE L1 -1595 912 705 1916 159 47 39 chr13 102889697 102890056 -16854842 - THE1B LTR MaLR -2 362 1 1002 282 80 80 chr13 102890056 102890219 -16854679 - HAL1 LINE L1 -1802 705 543 1966 79 40 14 chr13 102890219 102890520 -16854378 + AluY SINE Alu 1 308 0 1002 282 80 80 chr13 102890520 102890709 -16854189 - HAL1 LINE L1 -1964 543 355 2104 162 91 15 chr13 102890709 102891105 -16853793 - MSTB LTR MaLR 0 426 1 1002 282 80 80 chr13 102891105 102891444 -16853454 - HAL1 LINE L1 -2151 356 10 271 315 31 0 chr13 102891474 102891601 -16853297 - L1ME4a LINE L1 -259 5862 5732 322 261 91 67 chr13 102891620 102891785 -16853113 - L1ME4a LINE L1 -441 5680 5512 249 329 0 12 chr13 102891917 102891999 -16852899 + MIR SINE MIR 69 149 -113 279 169 90 22 chr13 102892144 102892233 -16852665 - HAL1b LINE L1 -8 1340 1246 414 0 0 0 chr13 102892235 102892281 -16852617 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 733 196 43 37 chr13 102892291 102892454 -16852444 - AluJo SINE Alu -30 282 119 1199 274 99 68 chr13 102892480 102892970 -16851928 - HAL1b LINE L1 -207 1141 667 1822 139 0 4 chr13 102892970 102893251 -16851647 - AluJb SINE Alu -19 293 14 1199 274 99 68 chr13 102893251 102893855 -16851043 - HAL1b LINE L1 -681 667 14 431 207 155 7 chr13 102894112 102894240 -16850658 + MER45A DNA AcHobo 1 147 -31 2062 103 20 3 chr13 102894748 102895049 -16849849 - AluSq SINE Alu -7 306 1 1612 213 52 29 chr13 102895532 102895940 -16848958 + MER63B DNA MER1_type 20 436 0 2400 185 85 34 chr13 102896290 102896333 -16848565 - L1MB3 LINE L1 0 6183 6144 2291 90 0 0 chr13 102896333 102896634 -16848264 - AluSx SINE Alu -11 301 1 2400 185 85 34 chr13 102896634 102896731 -16848167 - L1MB3 LINE L1 -39 6144 6053 2333 80 0 16 chr13 102896731 102897043 -16847855 - AluSp SINE Alu -5 308 2 2400 185 85 34 chr13 102897043 102897346 -16847552 - L1MB3 LINE L1 -130 6053 5699 2285 107 0 0 chr13 102897346 102897655 -16847243 + AluSx SINE Alu 1 309 -3 2400 185 85 34 chr13 102897655 102897798 -16847100 - L1MB3 LINE L1 -484 5699 5565 180 307 27 13 chr13 102898073 102898148 -16846750 - L2 LINE L2 -243 3029 2954 190 322 56 11 chr13 102898218 102898308 -16846590 - L2 LINE L2 -505 2809 2716 188 271 86 0 chr13 102898829 102898899 -16845999 + L2 LINE L2 3229 3304 -9 2244 73 0 29 chr13 102898908 102899221 -16845677 + AluSg SINE Alu 1 304 -6 21 0 0 0 chr13 102900524 102900545 -16844353 + AT_rich Low_complexity Low_complexity 1 21 0 1328 167 85 28 chr13 102901201 102901483 -16843415 - AluJo SINE Alu -14 298 1 2084 110 0 0 chr13 102902297 102902612 -16842286 + AluSx SINE Alu 1 315 0 2011 125 0 3 chr13 102903032 102903327 -16841571 - AluSx SINE Alu -18 294 1 2305 91 0 0 chr13 102903694 102903992 -16840906 - AluSg SINE Alu -12 298 1 661 342 48 4 chr13 102904239 102904511 -16840387 - L3 LINE CR1 -997 580 297 21 0 0 0 chr13 102904705 102904726 -16840172 + AT_rich Low_complexity Low_complexity 1 21 0 2178 103 6 6 chr13 102904741 102905053 -16839845 - AluSq SINE Alu -1 312 1 870 64 112 8 chr13 102905091 102905216 -16839682 - MER85 DNA T2_type -1 138 1 1679 171 7 4 chr13 102906381 102906661 -16838237 + AluJo SINE Alu 1 281 -31 1018 236 37 0 chr13 102906916 102907158 -16837740 + MIR SINE MIR 7 257 -5 235 352 109 16 chr13 102907188 102907316 -16837582 - MIR3 SINE MIR -65 143 4 2386 58 3 0 chr13 102907821 102908114 -16836784 + AluSp SINE Alu 1 294 -19 2377 41 3 7 chr13 102908278 102908571 -16836327 - AluY SINE Alu -19 292 1 649 163 39 12 chr13 102908947 102909087 -16835811 + L1MC3 LINE L1 5706 5851 -327 812 142 7 28 chr13 102909088 102909229 -16835669 + AluJo SINE Alu 2 139 -173 1798 151 0 3 chr13 102909231 102909516 -16835382 + AluSx SINE Alu 1 284 -28 243 257 0 0 chr13 102909536 102909637 -16835261 + C-rich Low_complexity Low_complexity 4 104 0 467 59 0 138 chr13 102909644 102909847 -16835051 + (CCCCCT)n Simple_repeat Simple_repeat 2 176 0 528 185 11 0 chr13 102909857 102909949 -16834949 + AluJo SINE Alu 141 233 -79 192 167 48 0 chr13 102910362 102910404 -16834494 + L2 LINE L2 3222 3265 -7 477 223 114 34 chr13 102911255 102911430 -16833468 - MER5A DNA MER1_type 0 189 1 1106 108 83 15 chr13 102911820 102912024 -16832874 - L1MA4 LINE L1 0 6300 6083 1402 180 7 27 chr13 102912081 102912376 -16832522 + AluJo SINE Alu 1 289 -23 23 33 0 0 chr13 102912677 102912707 -16832191 + AT_rich Low_complexity Low_complexity 1 30 0 1726 189 0 0 chr13 102913639 102913940 -16830958 - AluJo SINE Alu -11 301 1 2607 210 40 80 chr13 102914156 102914846 -16830052 - L1MB7 LINE L1 -13 6171 5520 783 102 0 274 chr13 102914846 102915112 -16829786 - 7SK RNA RNA 0 193 1 2607 210 40 80 chr13 102915112 102915270 -16829628 - L1MB7 LINE L1 -664 5520 5357 249 271 54 31 chr13 102915301 102915430 -16829468 - HAL1b LINE L1 -471 877 746 534 286 77 77 chr13 102915496 102915599 -16829299 - HAL1b LINE L1 -701 647 545 1439 184 58 11 chr13 102915599 102915877 -16829021 + AluJo SINE Alu 1 291 -21 534 286 77 77 chr13 102915877 102916321 -16828577 - HAL1b LINE L1 -802 546 100 2207 87 0 3 chr13 102916324 102916613 -16828285 - AluY SINE Alu -23 288 1 360 0 0 0 chr13 102917098 102917138 -16827760 + (TG)n Simple_repeat Simple_repeat 1 40 0 549 0 0 0 chr13 102918829 102918890 -16826008 + (CA)n Simple_repeat Simple_repeat 1 61 0 1798 104 65 21 chr13 102919134 102919413 -16825485 + AluSx SINE Alu 7 297 -15 193 264 0 83 chr13 102919445 102919517 -16825381 - MIR SINE MIR -190 72 7 2417 66 0 0 chr13 102919923 102920228 -16824670 - AluY SINE Alu -6 305 1 207 0 0 0 chr13 102920394 102920417 -16824481 + (T)n Simple_repeat Simple_repeat 1 23 0 2308 106 0 0 chr13 102920435 102920747 -16824151 + AluSx SINE Alu 1 312 0 1107 110 0 12 chr13 102920755 102920964 -16823934 + AluSg/x SINE Alu 134 310 0 2449 68 0 0 chr13 102921458 102921769 -16823129 - AluY SINE Alu 0 311 1 2232 121 21 3 chr13 102922100 102922430 -16822468 + MER1B DNA MER1_type 2 337 0 2077 121 0 0 chr13 102922978 102923276 -16821622 - AluSq SINE Alu -15 298 1 264 353 35 0 chr13 102923277 102923393 -16821505 - L2 LINE L2 -238 3034 2915 180 331 73 88 chr13 102923649 102923785 -16821113 + L2 LINE L2 3123 3256 -16 202 125 42 0 chr13 102924593 102924641 -16820257 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 1324 41 24 18 chr13 102925452 102925621 -16819277 - AluY SINE Alu -141 170 1 2100 114 0 7 chr13 102925631 102925938 -16818960 - AluSx SINE Alu -7 305 1 314 284 65 52 chr13 102925949 102926104 -16818794 - MIR SINE MIR -42 220 64 196 246 88 0 chr13 102926867 102926924 -16817974 - MIR SINE MIR -110 152 91 1584 177 35 0 chr13 102926950 102927238 -16817660 + AluJb SINE Alu 1 298 -14 2344 138 13 13 chr13 102927712 102928102 -16816796 + MLT1B LTR MaLR 1 390 0 414 256 108 8 chr13 102928276 102928405 -16816493 + L2 LINE L2 2093 2234 -1080 1734 154 12 111 chr13 102928405 102928504 -16816394 - MLT1A2 LTR MaLR 0 374 267 2192 143 55 24 chr13 102928504 102928923 -16815975 + MSTB1 LTR MaLR 1 432 0 1734 154 12 111 chr13 102928923 102929238 -16815660 - MLT1A2 LTR MaLR -107 267 1 1595 255 88 71 chr13 102929242 102929319 -16815579 + L2 LINE L2 2234 2308 -1005 2641 102 16 5 chr13 102929319 102929690 -16815208 + THE1C LTR MaLR 1 375 0 1595 255 88 71 chr13 102929690 102930460 -16814438 + L2 LINE L2 2308 3114 -199 1746 154 14 0 chr13 102930460 102930746 -16814152 - AluJo SINE Alu -12 300 11 1595 255 88 71 chr13 102930746 102930950 -16813948 + L2 LINE L2 3114 3313 0 641 181 199 56 chr13 102931007 102931160 -16813738 + MLT1D LTR MaLR 2 196 -309 2271 47 18 0 chr13 102931160 102931437 -16813461 + AluY SINE Alu 23 304 -7 641 181 199 56 chr13 102931437 102931499 -16813399 + MLT1D LTR MaLR 196 248 -257 535 225 2 11 chr13 102931550 102931688 -16813210 + MLT1D LTR MaLR 250 501 -4 502 149 11 0 chr13 102932082 102932169 -16812729 - AluY SINE Alu -5 306 219 504 225 52 29 chr13 102932625 102932798 -16812100 - L1ME3 LINE L1 -216 5946 5770 324 0 0 0 chr13 102933512 102933548 -16811350 + (CA)n Simple_repeat Simple_repeat 2 37 0 654 234 5 64 chr13 102934235 102934423 -16810475 + LTR16C LTR ERVL 315 491 0 1059 155 17 0 chr13 102934537 102934711 -16810187 + MLT1B LTR MaLR 1 177 -213 666 202 0 0 chr13 102934712 102934821 -16810077 + FLAM_C SINE Alu 2 110 -33 222 37 0 0 chr13 102934823 102934850 -16810048 + (TC)n Simple_repeat Simple_repeat 2 28 0 40 21 0 0 chr13 102934850 102934897 -16810001 + AT_rich Low_complexity Low_complexity 1 47 0 1035 201 46 14 chr13 102934897 102935116 -16809782 + MLT1B LTR MaLR 165 390 0 345 324 129 0 chr13 102935116 102935286 -16809612 - L3 LINE CR1 -138 1439 1248 1621 140 4 19 chr13 102935495 102935759 -16809139 + AluSx SINE Alu 1 260 -52 327 280 129 30 chr13 102935790 102935922 -16808976 - MIR3 SINE MIR -48 160 16 515 308 76 69 chr13 102936030 102936491 -16808407 - LTR16B LTR ERVL 0 464 1 472 238 147 73 chr13 102936517 102936544 -16808354 - L3 LINE CR1 -469 1108 1084 2337 69 0 0 chr13 102936544 102936833 -16808065 + AluY SINE Alu 1 289 -22 249 108 0 0 chr13 102936833 102936870 -16808028 + (TA)n Simple_repeat Simple_repeat 2 38 0 472 238 147 73 chr13 102936870 102937114 -16807784 - L3 LINE CR1 -492 1085 816 971 73 0 8 chr13 102937739 102937863 -16807035 - AluSg SINE Alu -187 123 1 1826 133 0 14 chr13 102937996 102938310 -16806588 + AluSx SINE Alu 1 310 0 295 309 82 18 chr13 102938816 102938926 -16805972 + MIR SINE MIR 25 141 -67 513 296 55 36 chr13 102938958 102939211 -16805687 - MIR SINE MIR 0 262 5 1927 121 7 10 chr13 102939240 102939538 -16805360 - AluSx SINE Alu -15 297 1 199 250 223 27 chr13 102939742 102939854 -16805044 - MER5A DNA MER1_type 0 189 56 * 330 242 57 105 chr13 102939781 102939905 -16804993 + MER5A DNA MER1_type 66 183 -6 2276 93 3 0 chr13 102940228 102940528 -16804370 + AluSx SINE Alu 1 301 -11 1604 165 152 3 chr13 102940785 102941100 -16803798 - MLT1A1 LTR MaLR 0 365 4 660 123 0 0 chr13 102941404 102941518 -16803380 + (TG)n Simple_repeat Simple_repeat 1 114 0 500 203 35 183 chr13 102941521 102941656 -16803242 + MIR SINE MIR 13 84 -178 2297 82 0 0 chr13 102941656 102941960 -16802938 + AluSg SINE Alu 1 304 -6 500 203 35 183 chr13 102941960 102942114 -16802784 + MIR SINE MIR 84 259 -3 1930 137 3 26 chr13 102942556 102942869 -16802029 - AluJb SINE Alu -6 306 1 197 254 73 0 chr13 102943159 102943214 -16801684 - MIR SINE MIR -61 147 89 1830 130 4 14 chr13 102943646 102943780 -16801118 + AluSq SINE Alu 1 135 -178 2090 120 0 0 chr13 102943780 102944080 -16800818 + AluSx SINE Alu 1 300 -12 1830 130 4 14 chr13 102944080 102944222 -16800676 + AluSq SINE Alu 135 274 -39 1875 219 45 2 chr13 102995224 102995640 -16749258 - MLT1C LTR MaLR -1 466 24 2444 77 0 10 chr13 102996092 102996403 -16748495 - AluY SINE Alu -3 308 1 3882 158 51 32 chr13 102996533 102997237 -16747661 + L1MB2 LINE L1 5397 6119 -52 2391 97 0 3 chr13 102997237 102997546 -16747352 + AluSq SINE Alu 1 308 -5 3882 158 51 32 chr13 102997546 102997601 -16747297 + L1MB2 LINE L1 6119 6171 0 830 134 14 28 chr13 102998660 102998802 -16746096 - AluJb SINE Alu -13 299 160 28 48 0 0 chr13 102998826 102998868 -16746030 + AT_rich Low_complexity Low_complexity 1 42 0 2280 129 46 6 chr13 102999971 103000321 -16744577 - THE1B LTR MaLR 0 364 1 1842 141 38 10 chr13 103000573 103000888 -16744010 - AluSx SINE Alu 0 312 1 2265 115 0 13 chr13 103000977 103001290 -16743608 - AluSq SINE Alu -4 309 1 189 0 0 0 chr13 103001306 103001327 -16743571 + (T)n Simple_repeat Simple_repeat 1 21 0 929 139 6 13 chr13 103001585 103001743 -16743155 + Tigger1 DNA MER2_type 1 157 -2261 * 1380 101 48 5 chr13 103001732 103001939 -16742959 + Tigger1 DNA MER2_type 2202 2417 -1 902 168 25 98 chr13 103004750 103004982 -16739916 - L1MB2 LINE L1 -29 6142 5933 2017 109 0 0 chr13 103004982 103005247 -16739651 - AluSp SINE Alu -11 302 38 902 168 25 98 chr13 103005247 103005299 -16739599 - L1MB2 LINE L1 -238 5933 5879 6945 131 34 30 chr13 103005617 103005869 -16739029 + Tigger2 DNA MER2_type 1 251 -2467 2091 133 0 13 chr13 103005869 103006170 -16738728 + AluSg SINE Alu 2 298 -12 6945 131 34 30 chr13 103006170 103006182 -16738716 + Tigger2 DNA MER2_type 251 261 -2457 2324 91 3 3 chr13 103006182 103006479 -16738419 + AluSq SINE Alu 1 297 -16 6945 131 34 30 chr13 103006479 103007397 -16737501 + Tigger2 DNA MER2_type 261 1188 -1530 1789 113 149 21 chr13 103007396 103007594 -16737304 + Tigger2 DNA MER2_type 2340 2511 -207 * 2597 105 11 3 chr13 103007594 103007955 -16736943 - THE1B LTR MaLR 0 364 1 1789 113 149 21 chr13 103007955 103008092 -16736806 + Tigger2 DNA MER2_type 2511 2718 0 354 219 42 0 chr13 103008549 103008645 -16736253 - L1MEd LINE L1 -5965 154 55 256 293 40 0 chr13 103009387 103009486 -16735412 - MER69A DNA AcHobo -55 122 20 1345 134 0 73 chr13 103010658 103010794 -16734104 + AluJb SINE Alu 1 117 -195 2224 95 0 11 chr13 103010794 103011105 -16733793 + AluSx SINE Alu 1 308 0 1345 134 0 73 chr13 103011105 103011198 -16733700 + AluJb SINE Alu 117 215 -97 1743 169 7 10 chr13 103011554 103011844 -16733054 + AluJo SINE Alu 1 289 -23 2368 85 0 13 chr13 103012574 103012879 -16732019 + AluSg1 SINE Alu 1 301 -8 834 176 13 0 chr13 103013421 103013580 -16731318 - L1MA10 LINE L1 -11 6323 6163 2108 98 3 29 chr13 103014931 103015237 -16729661 - AluSx SINE Alu -14 298 1 2657 29 13 3 chr13 103015245 103015553 -16729345 - AluY SINE Alu 0 311 1 227 146 18 0 chr13 103015701 103015756 -16729142 + (TG)n Simple_repeat Simple_repeat 2 57 0 2063 92 7 52 chr13 103016104 103016410 -16728488 + AluSx SINE Alu 1 292 -20 2813 217 42 18 chr13 103017726 103018353 -16726545 - MER82 DNA MER2_type -11 642 1 2503 90 0 0 chr13 103019601 103019911 -16724987 + AluSg SINE Alu 1 310 0 332 269 75 52 chr13 103020085 103020219 -16724679 + L2 LINE L2 3136 3272 0 261 349 55 0 chr13 103020363 103020472 -16724426 - MIR SINE MIR -63 145 31 2444 95 0 3 chr13 103020560 103020866 -16724032 + AluSx SINE Alu 1 305 -7 204 40 0 0 chr13 103020997 103021022 -16723876 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1902 121 14 14 chr13 103021022 103021304 -16723594 - AluSq SINE Alu -27 286 5 307 259 35 0 chr13 103022680 103022765 -16722133 + MIR SINE MIR 117 204 -58 461 293 14 47 chr13 103023440 103023655 -16721243 + MIR SINE MIR 52 259 -3 2502 51 0 29 chr13 103024377 103024689 -16720209 + AluY SINE Alu 1 303 -8 354 311 81 0 chr13 103025158 103025319 -16719579 + L1ME LINE L1 5556 5729 -392 803 187 84 15 chr13 103025518 103025721 -16719177 + L1MB3 LINE L1 5956 6172 -11 2279 131 0 0 chr13 103025721 103026026 -16718872 - AluSx SINE Alu -7 305 1 411 56 0 0 chr13 103026104 103026158 -16718740 + (TA)n Simple_repeat Simple_repeat 1 54 0 265 283 26 0 chr13 103026190 103026303 -16718595 - L1MC5 LINE L1 -215 7746 7631 2059 151 3 0 chr13 103026657 103026956 -16717942 + AluSg SINE Alu 1 300 -10 676 145 0 48 chr13 103027052 103027148 -16717750 + L1MA8 LINE L1 6170 6269 -22 2259 81 25 3 chr13 103027148 103027433 -16717465 - AluY SINE Alu -20 291 1 293 67 0 67 chr13 103027398 103027443 -16717455 - AluSp SINE Alu -133 170 129 676 145 0 48 chr13 103027433 103027460 -16717438 + L1MA8 LINE L1 6269 6287 -4 668 159 0 61 chr13 103027742 103027874 -16717024 + FLAM_C SINE Alu 5 128 -5 1693 155 3 37 chr13 103028092 103028389 -16716509 + AluJb SINE Alu 1 287 -25 372 230 14 34 chr13 103028389 103028537 -16716361 + (TA)n Simple_repeat Simple_repeat 2 146 0 342 0 0 0 chr13 103029049 103029087 -16715811 + (TG)n Simple_repeat Simple_repeat 2 39 0 308 276 69 11 chr13 103029095 103029182 -16715716 + MIR3 SINE MIR 88 179 -29 952 173 12 0 chr13 103030949 103031111 -16713787 - MSTB LTR MaLR -244 182 19 1781 169 0 17 chr13 103031190 103031486 -16713412 - AluSx SINE Alu -20 292 2 2223 94 3 0 chr13 103032161 103032474 -16712424 - AluSp SINE Alu 0 314 1 253 182 91 0 chr13 103032687 103032753 -16712145 - L1ME4a LINE L1 -27 6094 6023 2573 194 11 13 chr13 103033398 103033863 -16711035 + Tigger7 DNA MER2_type 10 473 -260 2914 7 0 0 chr13 103034478 103034785 -16710113 - AluYa5 SINE Alu -4 307 1 378 250 65 8 chr13 103035466 103035590 -16709308 + MIR SINE MIR 30 160 -102 2209 112 3 10 chr13 103035896 103036201 -16708697 + AluSx SINE Alu 1 303 -9 651 212 51 0 chr13 103037117 103037254 -16707644 - L1MB2 LINE L1 -7 6164 6021 892 225 88 0 chr13 103037254 103037494 -16707404 + MER58B DNA MER1_type 81 341 0 2281 111 0 0 chr13 103037636 103037934 -16706964 - AluSx SINE Alu -14 298 1 369 0 0 0 chr13 103037945 103037986 -16706912 + (TG)n Simple_repeat Simple_repeat 2 42 0 1155 120 0 120 chr13 103037989 103038198 -16706700 - AluJb SINE Alu -128 184 1 1539 123 53 4 chr13 103039000 103039228 -16705670 + AluSx SINE Alu 1 239 -73 253 394 51 0 chr13 103040306 103040443 -16704455 - L2 LINE L2 -1 3271 3128 4556 58 2 44 chr13 103040566 103041184 -16703714 - L1PA8 LINE L1 -8 6164 5573 2174 119 0 0 chr13 103041193 103041496 -16703402 - AluSx SINE Alu -9 303 1 307 252 101 17 chr13 103041769 103041888 -16703010 + MER117 DNA MER1_type 30 158 -39 1591 179 65 9 chr13 103042092 103042428 -16702470 - MER4D LTR ERV1 0 903 549 1627 168 50 0 chr13 103042463 103042743 -16702155 - MER49 LTR ERV1 -629 294 1 191 225 50 0 chr13 103042799 103042839 -16702059 + L2 LINE L2 3222 3263 -9 233 228 51 76 chr13 103042979 103043058 -16701840 - MIR SINE MIR -166 96 20 332 121 35 0 chr13 103043597 103043655 -16701243 - MADE1 DNA Mariner -20 60 1 303 71 0 0 chr13 103043772 103043814 -16701084 + MADE1 DNA Mariner 39 80 0 245 214 18 0 chr13 103044420 103044476 -16700422 + L1MC5 LINE L1 7721 7777 -184 270 0 0 0 chr13 103044503 103044533 -16700365 + (GA)n Simple_repeat Simple_repeat 1 30 0 180 135 0 0 chr13 103044535 103044572 -16700326 + (TA)n Simple_repeat Simple_repeat 2 38 0 302 170 0 0 chr13 103044572 103044625 -16700273 + L1MC5 LINE L1 7805 7857 -104 27 29 0 0 chr13 103044631 103044665 -16700233 + AT_rich Low_complexity Low_complexity 1 34 0 198 167 0 0 chr13 103044777 103044813 -16700085 + T-rich Low_complexity Low_complexity 1 36 0 558 0 0 0 chr13 103046276 103046338 -16698560 + (CA)n Simple_repeat Simple_repeat 2 63 0 1415 162 0 73 chr13 103046355 103046627 -16698271 - AluJo SINE Alu -30 282 31 671 260 6 17 chr13 103046953 103047126 -16697772 - MER5B DNA MER1_type 0 178 8 550 156 32 0 chr13 103047341 103047495 -16697403 + (TG)n Simple_repeat Simple_repeat 1 159 0 216 250 23 0 chr13 103047510 103047638 -16697260 + (TG)n Simple_repeat Simple_repeat 1 131 0 216 273 0 0 chr13 103047663 103047718 -16697180 + MER5B DNA MER1_type 121 175 -3 23 0 0 0 chr13 103047917 103047940 -16696958 + AT_rich Low_complexity Low_complexity 1 23 0 2274 65 0 34 chr13 103048008 103048322 -16696576 - AluY SINE Alu 0 304 1 552 213 195 0 chr13 103048639 103048813 -16696085 + MER3 DNA MER1_type 1 208 -1 240 175 32 32 chr13 103049336 103049399 -16695499 + L2 LINE L2 2694 2756 -558 21 0 0 0 chr13 103050217 103050238 -16694660 + AT_rich Low_complexity Low_complexity 1 21 0 1963 132 3 45 chr13 103050261 103050572 -16694326 + AluSg SINE Alu 1 298 -12 1718 168 58 0 chr13 103051210 103051502 -16693396 + AluJb SINE Alu 1 309 -3 2388 86 7 0 chr13 103051810 103052113 -16692785 + AluSc SINE Alu 1 305 -4 656 234 63 6 chr13 103053110 103053268 -16691630 - MER3 DNA MER1_type 0 209 43 1287 79 109 20 chr13 103053275 103053477 -16691421 - MER30 DNA MER1_type 0 230 11 2036 154 17 25 chr13 103055514 103055872 -16689026 + THE1A LTR MaLR 1 355 0 215 235 0 0 chr13 103055920 103055971 -16688927 - L2 LINE L2 0 3272 3222 2488 71 7 0 chr13 103056406 103056715 -16688183 - AluY SINE Alu 0 311 1 2355 89 0 0 chr13 103056985 103057287 -16687611 - AluSc SINE Alu -7 302 1 294 309 10 10 chr13 103057287 103057384 -16687514 - L2 LINE L2 -42 3230 3134 762 291 178 33 chr13 103059353 103060075 -16684823 - L2 LINE L2 -107 3206 2386 2541 131 30 32 chr13 103060211 103060646 -16684252 - Tigger2a DNA MER2_type 0 434 1 905 157 129 0 chr13 103061678 103061856 -16683042 - MER3 DNA MER1_type -8 201 1 2395 88 0 0 chr13 103063921 103064216 -16680682 + AluSq SINE Alu 1 295 -18 531 0 0 0 chr13 103064233 103064292 -16680606 + (CA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chr13 103064305 103064327 -16680571 + AT_rich Low_complexity Low_complexity 1 22 0 448 208 27 53 chr13 103065183 103065345 -16679553 + MER5B DNA MER1_type 20 184 -5 1640 166 33 0 chr13 103065875 103066146 -16678752 - AluJb SINE Alu -9 303 24 23 54 0 0 chr13 103068276 103068313 -16676585 + AT_rich Low_complexity Low_complexity 1 37 0 184 213 43 0 chr13 103070117 103070164 -16674734 + L3 LINE CR1 1528 1576 -1 555 237 111 32 chr13 103070177 103070367 -16674531 + MER20 DNA MER1_type 1 205 -14 1056 253 21 26 chr13 103072263 103072603 -16672295 + L1MB8 LINE L1 5837 6174 -4 195 237 0 0 chr13 103072960 103072998 -16671900 - L3b LINE CR1 -7 1576 1539 262 98 16 16 chr13 103074291 103074352 -16670546 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 3365 194 22 33 chr13 103074449 103074511 -16670387 - Tigger6a DNA MER2_type -897 700 639 2343 86 0 20 chr13 103074511 103074814 -16670084 - AluSp SINE Alu -10 303 7 3365 194 22 33 chr13 103074814 103075447 -16669451 - Tigger6a DNA MER2_type -958 639 13 236 336 84 9 chr13 103075578 103075685 -16669213 - MIR SINE MIR -119 143 29 1991 146 0 29 chr13 103075694 103076010 -16668888 - AluJo SINE Alu -5 307 1 197 310 78 17 chr13 103076131 103076247 -16668651 - MIR SINE MIR -75 187 65 196 346 81 27 chr13 103076937 103077122 -16667776 + L2 LINE L2 2622 2816 -498 288 0 0 0 chr13 103077220 103077252 -16667646 + (T)n Simple_repeat Simple_repeat 1 32 0 346 259 70 38 chr13 103077674 103077832 -16667066 + MER33 DNA MER1_type 4 166 -158 1831 148 0 38 chr13 103077849 103078167 -16666731 - AluJb SINE Alu -6 306 1 27 49 0 0 chr13 103078173 103078214 -16666684 + AT_rich Low_complexity Low_complexity 1 41 0 478 146 18 134 chr13 103078269 103078351 -16666547 + MER33 DNA MER1_type 169 222 -2363 2632 30 0 10 chr13 103078351 103078655 -16666243 - AluY SINE Alu -10 301 1 478 146 18 134 chr13 103078655 103078743 -16666155 + MER33 DNA MER1_type 222 319 -5 312 283 40 0 chr13 103080410 103080509 -16664389 - MIR SINE MIR -113 149 47 243 88 0 0 chr13 103080736 103080770 -16664128 + (TG)n Simple_repeat Simple_repeat 1 34 0 2112 119 0 10 chr13 103081019 103081314 -16663584 - AluSx SINE Alu -1 311 20 2573 59 3 0 chr13 103081322 103081625 -16663273 - AluY SINE Alu -7 304 1 590 150 79 64 chr13 103082151 103082291 -16662607 + MLT1C LTR MaLR 1 142 -325 291 28 0 0 chr13 103082296 103082332 -16662566 + (CA)n Simple_repeat Simple_repeat 2 37 0 288 0 0 0 chr13 103082429 103082461 -16662437 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr13 103082500 103082526 -16662372 + (CA)n Simple_repeat Simple_repeat 2 27 0 1046 177 91 42 chr13 103082529 103082794 -16662104 + MLT1C LTR MaLR 189 466 -1 2662 53 0 0 chr13 103083462 103083764 -16661134 - AluSc SINE Alu -7 302 1 1292 178 101 4 chr13 103084312 103084588 -16660310 - AluJo SINE Alu -7 305 3 527 285 6 6 chr13 103085497 103085662 -16659236 - MIR SINE MIR -35 227 63 845 158 0 0 chr13 103086445 103086584 -16658314 - FRAM SINE Alu -11 165 27 909 206 15 20 chr13 103086856 103087060 -16657838 - MLT1A2 LTR MaLR -15 359 157 365 216 11 17 chr13 103087071 103087255 -16657643 + CT-rich Low_complexity Low_complexity 1 182 0 1537 181 59 10 chr13 103087255 103087543 -16657355 - AluJo SINE Alu -10 302 1 456 261 102 13 chr13 103087545 103087702 -16657196 - MLT1A2 LTR MaLR -219 171 1 1810 176 3 6 chr13 103088137 103088450 -16656448 - AluJo SINE Alu 0 312 1 21 36 0 0 chr13 103088488 103088516 -16656382 + AT_rich Low_complexity Low_complexity 1 28 0 2379 83 0 0 chr13 103088525 103088815 -16656083 + AluY SINE Alu 1 290 -21 307 210 199 81 chr13 103091030 103091202 -16653696 + MIR SINE MIR 23 220 -42 2230 122 0 0 chr13 103091202 103091506 -16653392 + AluSq SINE Alu 1 304 -9 307 210 199 81 chr13 103091506 103091519 -16653379 + MIR SINE MIR 220 230 -32 21 0 0 0 chr13 103092428 103092449 -16652449 + AT_rich Low_complexity Low_complexity 1 21 0 1006 186 41 5 chr13 103095487 103095707 -16649191 - L1MB2 LINE L1 0 6171 5944 3542 181 55 13 chr13 103096819 103096920 -16647978 - MER44D DNA MER2_type -1888 599 504 3165 187 87 9 chr13 103096920 103097588 -16647310 - MER72 LTR ERV1 0 722 3 3542 181 55 13 chr13 103097588 103098177 -16646721 - MER44D DNA MER2_type -1983 504 8 2246 109 0 0 chr13 103098566 103098851 -16646047 + AluSx SINE Alu 1 285 -27 775 255 115 34 chr13 103098964 103099521 -16645377 - L2 LINE L2 -1 3312 2708 2347 70 28 0 chr13 103099669 103099953 -16644945 + AluSx SINE Alu 3 294 -18 384 317 57 12 chr13 103100798 103101044 -16643854 - MIR SINE MIR -5 257 1 1344 114 29 41 chr13 103101243 103101488 -16643410 - L1MB3 LINE L1 -1 6182 5941 22 56 0 0 chr13 103102429 103102465 -16642433 + AT_rich Low_complexity Low_complexity 1 36 0 387 0 0 0 chr13 103102623 103102666 -16642232 + (CA)n Simple_repeat Simple_repeat 2 44 0 232 228 0 0 chr13 103103113 103103170 -16641728 + CT-rich Low_complexity Low_complexity 1 57 0 375 269 59 0 chr13 103103203 103103322 -16641576 - MIR SINE MIR -43 219 94 210 376 0 0 chr13 103103659 103103752 -16641146 - MIR SINE MIR -20 242 150 1176 224 48 51 chr13 103103789 103104164 -16640734 + MLT1A2 LTR MaLR 1 374 0 195 171 24 0 chr13 103104185 103104226 -16640672 + L2 LINE L2 2985 3026 -246 2217 120 16 61 chr13 103104398 103104774 -16640124 - THE1B LTR MaLR -5 359 1 1967 92 0 72 chr13 103105430 103105758 -16639140 - AluSx SINE Alu 0 306 1 1707 157 10 20 chr13 103106271 103106564 -16638334 + AluJo SINE Alu 1 290 -22 450 0 0 0 chr13 103106725 103106775 -16638123 + (TG)n Simple_repeat Simple_repeat 2 51 0 2872 173 29 50 chr13 103107298 103107951 -16636947 - L1MB3 LINE L1 0 6183 5545 2016 146 128 13 chr13 103108306 103108690 -16636208 - MSTA LTR MaLR 0 428 1 2132 73 0 4 chr13 103109572 103109832 -16635066 - AluSx SINE Alu -53 259 1 2326 101 0 0 chr13 103110538 103110835 -16634063 + AluSg SINE Alu 1 297 -13 220 250 172 0 chr13 103111075 103111139 -16633759 - L2 LINE L2 -9 3263 3189 2644 145 102 75 chr13 103111437 103111603 -16633295 + L1MC2 LINE L1 5654 5814 -530 2229 116 0 3 chr13 103111603 103111897 -16633001 + AluSq SINE Alu 1 293 -20 2644 145 102 75 chr13 103111897 103111929 -16632969 + L1MC2 LINE L1 5814 5844 -500 2231 115 3 0 chr13 103111929 103112225 -16632673 + AluSp SINE Alu 1 297 -16 2644 145 102 75 chr13 103112225 103112689 -16632209 + L1MC2 LINE L1 5844 6335 -9 588 209 25 38 chr13 103113121 103113279 -16631619 - MER33 DNA MER1_type -159 165 10 249 349 116 25 chr13 103113311 103113838 -16631060 - L2 LINE L2 -557 2757 2183 672 256 56 0 chr13 103114910 103115070 -16629828 - MER58B DNA MER1_type 0 341 173 389 247 147 0 chr13 103115115 103115270 -16629628 - MIR SINE MIR -34 228 45 1435 95 0 0 chr13 103115374 103115563 -16629335 - AluSg/x SINE Alu -9 303 115 1367 201 110 12 chr13 103115563 103115891 -16629007 + L1MB2 LINE L1 5812 6171 0 816 188 0 0 chr13 103116127 103116255 -16628643 + AluSg/x SINE Alu 164 291 -21 345 276 47 24 chr13 103116300 103116427 -16628471 + L1ME3A LINE L1 5998 6127 -43 1957 209 79 11 chr13 103116756 103117210 -16627688 - L1MB2 LINE L1 0 6171 5687 432 211 179 0 chr13 103117976 103118099 -16626799 - MER31B LTR ERV1 -321 145 1 1263 201 19 19 chr13 103118100 103118359 -16626539 - MER58 DNA MER1_type -2161 259 1 241 305 118 37 chr13 103118633 103118820 -16626078 + MIR SINE MIR 52 253 -9 2180 90 19 16 chr13 103118892 103119203 -16625695 + AluSx SINE Alu 1 312 0 1312 255 13 21 chr13 103119813 103120190 -16624708 - L1MC2 LINE L1 -9 6335 5962 1254 191 81 130 chr13 103120200 103120755 -16624143 + MER74B LTR ERVL 69 596 -26 1856 176 98 28 chr13 103120763 103120832 -16624066 - MSTB LTR MaLR 0 426 363 2528 74 0 0 chr13 103120832 103121143 -16623755 + AluY SINE Alu 1 311 0 1856 176 98 28 chr13 103121143 103121471 -16623427 - MSTB LTR MaLR -63 363 1 492 230 164 0 chr13 103122240 103122392 -16622506 + L1MC5 LINE L1 7333 7509 -452 467 194 61 10 chr13 103122534 103122632 -16622266 - MSTB LTR MaLR -217 209 107 252 264 33 11 chr13 103122795 103122886 -16622012 + L1ME3 LINE L1 6044 6136 -26 2306 98 3 0 chr13 103122892 103123179 -16621719 - AluSp SINE Alu -25 288 1 28 0 0 0 chr13 103123204 103123232 -16621666 + AT_rich Low_complexity Low_complexity 1 28 0 488 144 67 0 chr13 103123284 103123374 -16621524 + L1MB1 LINE L1 6068 6163 -5 269 307 44 15 chr13 103123881 103124018 -16620880 + L1MC5 LINE L1 7500 7640 -321 840 224 35 13 chr13 103124069 103124297 -16620601 + L1ME LINE L1 5555 5787 -377 634 206 42 42 chr13 103124368 103124557 -16620341 + MER33 DNA MER1_type 40 228 -96 1861 160 10 3 chr13 103124567 103124861 -16620037 + AluJb SINE Alu 1 296 -16 826 197 48 48 chr13 103124948 103125136 -16619762 + MER5A DNA MER1_type 1 188 -1 976 228 140 20 chr13 103125316 103125710 -16619188 - L1MEc LINE L1 -3190 3025 2585 916 133 259 7 chr13 103125710 103125991 -16618907 - Tigger3(Golem) DNA MER2_type 0 3029 1 1046 222 64 66 chr13 103125991 103126123 -16618775 - L1MEc LINE L1 -3631 2584 2453 2077 98 29 0 chr13 103126123 103126434 -16618464 - AluSx SINE Alu 0 319 1 1046 222 64 66 chr13 103126434 103126829 -16618069 - L1MEc LINE L1 -3762 2453 2110 280 203 58 14 chr13 103126829 103126898 -16618000 + MER6 DNA MER2_type 794 865 0 3099 256 119 19 chr13 103126901 103127994 -16616904 - L1MEc LINE L1 -5160 1236 35 2197 96 30 7 chr13 103128137 103128438 -16616460 - AluY SINE Alu -3 308 1 358 271 166 11 chr13 103128645 103128826 -16616072 + MIR SINE MIR 47 255 -7 1267 232 55 0 chr13 103129058 103129347 -16615551 + MER7A DNA MER2_type 1 303 -43 1173 209 80 78 chr13 103129497 103129592 -16615306 + MLT1B LTR MaLR 1 94 -296 2278 96 3 0 chr13 103129592 103129883 -16615015 - AluSx SINE Alu -6 306 15 1173 209 80 78 chr13 103129883 103130174 -16614724 + MLT1B LTR MaLR 94 388 -2 1721 141 63 0 chr13 103131483 103131767 -16613131 + AluJb SINE Alu 1 302 -10 723 336 156 19 chr13 103131945 103132674 -16612224 + L2 LINE L2 1968 2796 -518 1175 246 91 19 chr13 103132876 103133237 -16611661 + MER74B LTR ERVL 75 461 -161 2088 125 0 0 chr13 103133238 103133541 -16611357 - AluSg SINE Alu -7 303 1 301 284 154 76 chr13 103133550 103133997 -16610901 - L1ME LINE L1 -301 5820 5339 326 295 84 0 chr13 103134275 103134370 -16610528 + MIR SINE MIR 21 123 -139 329 43 21 0 chr13 103135373 103135420 -16609478 + (TG)n Simple_repeat Simple_repeat 2 49 0 351 0 0 0 chr13 103136636 103136675 -16608223 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1713 134 29 4 chr13 103136675 103136951 -16607947 - AluSx SINE Alu -29 283 1 257 313 173 14 chr13 103138112 103138320 -16606578 + MIR SINE MIR 20 260 -2 341 216 11 0 chr13 103138321 103138409 -16606489 + (CAT)n Simple_repeat Simple_repeat 1 89 0 2086 119 3 0 chr13 103138432 103138727 -16606171 - AluSx SINE Alu -16 296 1 3591 34 0 0 chr13 103138867 103139285 -16605613 - L1PA3 LINE L1 0 6155 5738 483 305 217 8 chr13 103139438 103139825 -16605073 - L2 LINE L2 -10 3303 2836 357 320 90 48 chr13 103139850 103140262 -16604636 - L2 LINE L2 -626 2688 2260 2258 104 0 0 chr13 103141578 103141887 -16603011 - AluSg SINE Alu -1 309 1 450 49 0 0 chr13 103143024 103143085 -16601813 + (CA)n Simple_repeat Simple_repeat 2 62 0 200 193 227 34 chr13 103143290 103143378 -16601520 - MIR SINE MIR -8 254 150 234 320 46 26 chr13 103143562 103143644 -16601254 - L1MC4 LINE L1 -293 7749 7670 1701 153 4 7 chr13 103143644 103143925 -16600973 + AluJb SINE Alu 1 280 -32 189 107 0 0 chr13 103143925 103143953 -16600945 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 234 320 46 26 chr13 103143953 103144161 -16600737 - L1MC4 LINE L1 -371 7671 7357 2360 161 35 10 chr13 103144175 103144578 -16600320 - MSTB1 LTR MaLR -1 431 19 320 271 17 8 chr13 103144762 103144880 -16600018 - L1MC4 LINE L1 -802 7240 7122 241 340 19 0 chr13 103144943 103145049 -16599849 - L1MC5 LINE L1 -855 7106 6999 2089 92 0 3 chr13 103145120 103145403 -16599495 - AluSx SINE Alu -2 310 29 5295 99 36 23 chr13 103145600 103146425 -16598473 - L1MA3 LINE L1 -103 6202 5367 2304 77 0 3 chr13 103146527 103146827 -16598071 + AluSc SINE Alu 5 303 -6 608 54 90 6 chr13 103148396 103148562 -16596336 + (TA)n Simple_repeat Simple_repeat 1 180 0 620 37 99 0 chr13 103148588 103148750 -16596148 + (TA)n Simple_repeat Simple_repeat 1 178 0 383 248 28 18 chr13 103148751 103148860 -16596038 - MIR SINE MIR -56 206 97 273 302 201 0 chr13 103148961 103149070 -16595828 + MIR SINE MIR 78 164 -98 1812 185 42 0 chr13 103149070 103149400 -16595498 + MER2 DNA MER2_type 1 344 0 273 302 201 0 chr13 103149400 103149439 -16595459 + MIR SINE MIR 164 256 -6 1865 89 82 11 chr13 103149667 103149947 -16594951 + AluSx SINE Alu 1 300 -12 759 89 17 128 chr13 103149947 103150091 -16594807 + L1MA8 LINE L1 6129 6251 -40 1592 169 21 17 chr13 103150091 103150381 -16594517 - AluJb SINE Alu -21 291 1 759 89 17 128 chr13 103150381 103150415 -16594483 + L1MA8 LINE L1 6251 6287 -4 852 127 30 0 chr13 103151373 103151507 -16593391 + AluJo SINE Alu 1 138 -174 * 1239 174 4 17 chr13 103151506 103151741 -16593157 + AluJb SINE Alu 64 295 -17 2413 216 84 15 chr13 103152069 103152679 -16592219 - MER82 DNA MER2_type -1 652 1 1943 129 0 0 chr13 103153716 103153995 -16590903 - AluSx SINE Alu -33 279 1 189 0 0 0 chr13 103155690 103155711 -16589187 + (T)n Simple_repeat Simple_repeat 1 21 0 442 254 21 49 chr13 103155973 103156115 -16588783 - L1MA10 LINE L1 -11 6323 6186 2174 107 7 0 chr13 103156521 103156819 -16588079 + AluSx SINE Alu 1 300 -12 289 296 70 85 chr13 103157398 103157597 -16587301 + MIR SINE MIR 66 261 -1 239 212 182 15 chr13 103159950 103160016 -16584882 - L2 LINE L2 0 3272 3196 1709 157 28 0 chr13 103160786 103161073 -16583825 - AluJo SINE Alu -17 295 1 613 271 84 5 chr13 103161114 103161328 -16583570 - MIR SINE MIR -10 252 22 318 294 59 0 chr13 103161404 103161523 -16583375 - HAL1b LINE L1 -2 1346 1221 1869 135 0 49 chr13 103161705 103162030 -16582868 + AluJb SINE Alu 1 309 -3 825 120 30 15 chr13 103164022 103164155 -16580743 + AluJb SINE Alu 1 135 -177 1393 152 59 48 chr13 103164155 103164445 -16580453 + AluJo SINE Alu 1 293 -19 187 118 0 39 chr13 103165947 103165998 -16578900 + (GGA)n Simple_repeat Simple_repeat 2 50 0 1010 286 86 6 chr13 103166421 103166935 -16577963 - L1M4 LINE L1 -825 5321 4767 811 136 129 13 chr13 103166938 103167093 -16577805 + THE1C LTR MaLR 1 173 -202 26 74 0 0 chr13 103167592 103167646 -16577252 + AT_rich Low_complexity Low_complexity 1 54 0 277 302 153 41 chr13 103168593 103168888 -16576010 + L2 LINE L2 2945 3272 0 243 342 25 8 chr13 103169163 103169283 -16575615 - L3 LINE CR1 -1 1576 1455 201 156 0 0 chr13 103169944 103169976 -16574922 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 1696 163 3 10 chr13 103170106 103170406 -16574492 + AluJo SINE Alu 1 298 -14 1840 197 104 7 chr13 103170782 103171204 -16573694 - L1MC2 LINE L1 -8 6336 5874 1044 209 16 63 chr13 103172775 103173029 -16571869 + L1MD2 LINE L1 6104 6345 -14 1884 94 7 49 chr13 103173857 103174164 -16570734 + AluJo SINE Alu 1 294 -18 328 350 14 0 chr13 103174465 103174605 -16570293 - L3 LINE CR1 -224 1353 1212 500 252 136 7 chr13 103174759 103174906 -16569992 - MER5B DNA MER1_type -5 173 8 391 313 61 6 chr13 103174950 103175113 -16569785 - L3 LINE CR1 -631 946 775 1768 137 3 7 chr13 103175785 103176069 -16568829 - AluJo SINE Alu -25 287 5 393 235 88 111 chr13 103176710 103176927 -16567971 - L1MC2 LINE L1 -1958 5850 5639 2648 180 48 4 chr13 103179320 103179858 -16565040 + L1MB3 LINE L1 5615 6176 -7 2330 98 3 7 chr13 103180821 103181127 -16563771 + AluSx SINE Alu 1 305 -7 299 297 17 34 chr13 103181292 103181410 -16563488 + MER5A DNA MER1_type 50 165 -24 303 113 0 0 chr13 103181526 103181579 -16563319 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 610 232 72 11 chr13 103182153 103182334 -16562564 - L1MD3 LINE L1 0 7995 7804 267 31 0 0 chr13 103183566 103183598 -16561300 + (A)n Simple_repeat Simple_repeat 1 32 0 534 133 24 0 chr13 103184050 103184133 -16560765 + L1M3 LINE L1 5696 5780 -403 850 225 0 11 chr13 103184146 103184324 -16560574 - FRAM SINE Alu 0 176 1 2076 117 7 3 chr13 103184367 103184684 -16560214 - AluSx SINE Alu 0 318 1 2301 96 3 0 chr13 103185302 103185593 -16559305 + AluSx SINE Alu 1 292 -20 306 0 0 0 chr13 103185594 103185628 -16559270 + (CA)n Simple_repeat Simple_repeat 2 35 0 1665 171 24 14 chr13 103187686 103187978 -16556920 + AluJo SINE Alu 1 295 -17 3603 73 5 0 chr13 103188975 103189424 -16555474 - MLT2A2 LTR ERVL -2 451 1 243 0 0 0 chr13 103189522 103189549 -16555349 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 422 342 7 0 chr13 103189777 103189929 -16554969 + MIR SINE MIR 97 249 -13 1608 71 13 59 chr13 103190881 103191120 -16553778 - MER30 DNA MER1_type 0 230 3 1405 99 0 5 chr13 103191500 103191691 -16553207 - AluSp SINE Alu -8 305 116 425 275 127 0 chr13 103192661 103192803 -16552095 - MER5B DNA MER1_type -6 172 13 27 73 0 0 chr13 103192949 103193004 -16551894 + AT_rich Low_complexity Low_complexity 1 55 0 300 288 151 14 chr13 103193399 103193545 -16551353 - MIR3 SINE MIR -7 201 36 933 71 79 0 chr13 103195958 103196084 -16548814 - MER85 DNA T2_type 0 139 4 207 0 0 0 chr13 103196475 103196498 -16548400 + (CA)n Simple_repeat Simple_repeat 2 24 0 219 327 37 28 chr13 103196812 103196919 -16547979 + L3b LINE CR1 1388 1495 -88 459 113 0 0 chr13 103199057 103199128 -16545770 + (CCA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr13 103202403 103202425 -16542473 + AT_rich Low_complexity Low_complexity 1 22 0 208 237 53 0 chr13 103303888 103303918 -16440980 + T-rich Low_complexity Low_complexity 5 32 -52 3643 156 27 24 chr13 103303918 103304670 -16440228 - L1MB3 LINE L1 -2 6181 5428 208 237 53 0 chr13 103304670 103304715 -16440183 + T-rich Low_complexity Low_complexity 32 84 0 519 114 0 0 chr13 103304727 103304815 -16440083 - L1MB3 LINE L1 -743 5440 5353 1137 146 21 47 chr13 103305516 103305708 -16439190 + AluJo SINE Alu 1 187 -125 690 172 0 16 chr13 103305708 103305830 -16439068 + AluJb SINE Alu 148 267 -45 431 194 132 0 chr13 103305996 103306125 -16438773 - MER58C DNA MER1_type 0 215 70 24 32 0 0 chr13 103306294 103306325 -16438573 + AT_rich Low_complexity Low_complexity 1 31 0 2064 152 143 2 chr13 103307629 103308084 -16436814 - L1MB7 LINE L1 -19 6165 5647 22 0 0 0 chr13 103308182 103308204 -16436694 + AT_rich Low_complexity Low_complexity 1 22 0 6383 61 16 14 chr13 103308320 103309588 -16435310 - L1PA7 LINE L1 -21 6133 4873 189 0 0 0 chr13 103309599 103309620 -16435278 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1896 105 111 22 chr13 103310233 103310548 -16434350 - MER61A LTR ERV1 0 343 1 2583 204 46 6 chr13 103310738 103311278 -16433620 - MER68 LTR ERV1 0 562 1 552 125 0 10 chr13 103311322 103311418 -16433480 + AluJb SINE Alu 137 231 -81 22 0 0 0 chr13 103311440 103311462 -16433436 + AT_rich Low_complexity Low_complexity 1 22 0 2236 90 3 26 chr13 103311947 103312258 -16432640 - AluSg SINE Alu -6 304 1 701 141 124 0 chr13 103314177 103314298 -16430600 - AluJo SINE Alu -176 136 1 272 314 189 46 chr13 103315466 103316195 -16428703 + L2 LINE L2 2360 3180 -92 239 250 69 0 chr13 103316917 103316989 -16427909 - MIR3 SINE MIR -46 162 86 438 275 105 39 chr13 103317270 103317499 -16427399 + MIR SINE MIR 5 248 -14 361 134 45 0 chr13 103317889 103317956 -16426942 - L1M2 LINE L1 -6299 550 481 381 185 92 59 chr13 103318005 103318124 -16426774 - MER65B LTR ERV1 -408 123 1 27 49 0 0 chr13 103318677 103318718 -16426180 + AT_rich Low_complexity Low_complexity 1 41 0 845 229 43 43 chr13 103319152 103319527 -16425371 + L1M4 LINE L1 4372 4746 -1400 1870 165 0 3 chr13 103319546 103319831 -16425067 + AluSx SINE Alu 1 284 -28 824 245 131 4 chr13 103319860 103320219 -16424679 + MER57A LTR ERV1 22 403 0 1386 212 22 24 chr13 103320223 103320638 -16424260 + L1M4 LINE L1 4751 5164 -982 9047 202 35 14 chr13 103320639 103322567 -16422331 + L1M3 LINE L1 1 1968 -4881 40769 33 23 1 chr13 103322567 103328586 -16416312 + L1PA2 LINE L1 2 6155 0 5562 187 51 21 chr13 103328719 103329827 -16415071 + L1M3 LINE L1 1960 3033 -3815 2112 132 0 26 chr13 103329827 103330138 -16414760 + AluSx SINE Alu 1 303 -9 5562 187 51 21 chr13 103330138 103331466 -16413432 + L1M3 LINE L1 3033 4471 -2377 1441 178 0 19 chr13 103331487 103331746 -16413152 + AluJo SINE Alu 1 254 -58 599 171 0 0 chr13 103331746 103331851 -16413047 + AluJb SINE Alu 192 296 -16 7399 154 38 14 chr13 103331866 103333234 -16411664 + L1M3 LINE L1 4489 5915 -1092 1669 193 14 7 chr13 103333234 103333519 -16411379 + AluJo SINE Alu 1 287 -25 7399 154 38 14 chr13 103333519 103334108 -16410790 + L1M3 LINE L1 5915 6488 -519 561 110 0 0 chr13 103334123 103334214 -16410684 + (GGGAGA)n Simple_repeat Simple_repeat 3 93 0 640 226 104 77 chr13 103334529 103334856 -16410042 + L1M4 LINE L1 3807 4142 -2004 2127 115 20 13 chr13 103334856 103335160 -16409738 - AluSx SINE Alu -6 306 1 429 216 3 50 chr13 103335172 103335307 -16409591 - L1M4 LINE L1 -1828 4318 4187 234 186 0 0 chr13 103335308 103335351 -16409547 + THE1C LTR MaLR 66 108 -247 2073 113 3 3 chr13 103335373 103335683 -16409215 + THE1C LTR MaLR 66 375 0 933 203 176 20 chr13 103335707 103336150 -16408748 + L1M4 LINE L1 4157 4668 -1478 621 150 100 0 chr13 103336772 103336872 -16408026 + FRAM SINE Alu 36 145 -31 1610 164 7 53 chr13 103337599 103337898 -16407000 + AluJo SINE Alu 7 291 -21 2219 96 0 22 chr13 103337962 103338275 -16406623 - AluSc SINE Alu -3 306 1 2317 96 7 3 chr13 103338480 103338781 -16406117 + AluSx SINE Alu 1 302 -10 3100 180 44 51 chr13 103338816 103339606 -16405292 - LTR1 LTR ERV1 0 785 1 2150 125 64 9 chr13 103340155 103340500 -16404398 + THE1B LTR MaLR 1 364 0 2087 124 3 0 chr13 103341023 103341306 -16403592 - AluSx SINE Alu -28 284 1 2900 184 17 34 chr13 103341399 103341985 -16402913 - MER21B LTR ERV1 -54 809 234 999 252 59 28 chr13 103341990 103342280 -16402618 - MER21B LTR ERV1 -564 299 1 986 143 63 0 chr13 103342516 103342691 -16402207 + MER2 DNA MER2_type 160 345 0 180 318 58 65 chr13 103343119 103343273 -16401625 + L2 LINE L2 2253 2405 -909 371 91 0 0 chr13 103343291 103343346 -16401552 + AluSc SINE Alu 242 296 -3 248 182 0 0 chr13 103343427 103343471 -16401427 + MIR SINE MIR 209 252 -10 2081 131 0 3 chr13 103343579 103343876 -16401022 - AluSx SINE Alu -16 296 1 1549 188 41 4 chr13 103344029 103344300 -16400598 + AluJo SINE Alu 1 281 -31 334 325 16 24 chr13 103344474 103344600 -16400298 + MIR3 SINE MIR 63 187 -21 2784 86 6 0 chr13 103344775 103345137 -16399761 - THE1B LTR MaLR 0 364 1 1668 179 124 22 chr13 103345255 103345801 -16399097 - Charlie1 DNA MER1_type -18 2743 2142 323 270 14 0 chr13 103345794 103345868 -16399030 - Charlie1 DNA MER1_type -2686 75 1 * 272 264 42 0 chr13 103345955 103346027 -16398871 - L1ME LINE L1 -594 5568 5494 199 283 20 61 chr13 103346844 103346943 -16397955 - MIR SINE MIR -57 205 111 918 268 128 25 chr13 103347075 103347511 -16397387 - MLT1E LTR MaLR 0 593 113 718 133 117 8 chr13 103347630 103347758 -16397140 + AluJo SINE Alu 1 142 -170 381 185 148 28 chr13 103347759 103347867 -16397031 - MLT1E LTR MaLR -472 121 1 1645 170 3 18 chr13 103348233 103348516 -16396382 + AluJo SINE Alu 4 282 -30 2451 84 0 0 chr13 103348542 103348851 -16396047 + AluSg SINE Alu 1 309 -1 575 230 40 35 chr13 103349919 103350119 -16394779 + L1MB8 LINE L1 5977 6177 -1 873 182 7 0 chr13 103351265 103351408 -16393490 + AluJo SINE Alu 145 288 -24 1763 132 75 11 chr13 103351419 103351699 -16393199 + AluSx SINE Alu 1 298 -14 1266 196 0 9 chr13 103352384 103352603 -16392295 - AluJo SINE Alu -20 292 76 21 0 0 0 chr13 103353358 103353379 -16391519 + AT_rich Low_complexity Low_complexity 1 21 0 303 299 46 148 chr13 103354090 103354394 -16390504 - L2 LINE L2 -14 3258 2986 1913 152 33 55 chr13 103354556 103354836 -16390062 - L1MD1 LINE L1 -83 6159 5889 527 189 23 53 chr13 103354836 103354968 -16389930 - FLAM_A SINE Alu -5 128 1 1913 152 33 55 chr13 103354968 103355107 -16389791 - L1MD1 LINE L1 -353 5889 5749 1857 74 4 0 chr13 103355107 103355336 -16389562 + AluSp SINE Alu 63 292 -21 1286 185 33 42 chr13 103355337 103355667 -16389231 - L1MDa LINE L1 -6189 351 25 2039 109 13 0 chr13 103355671 103355974 -16388924 - L1PA8 LINE L1 -2 6170 5864 308 192 169 31 chr13 103357263 103357393 -16387505 - L1ME4a LINE L1 -34 6087 5940 261 0 0 0 chr13 103357412 103357441 -16387457 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr13 103357440 103357460 -16387438 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr13 103357710 103357737 -16387161 + (TA)n Simple_repeat Simple_repeat 2 28 0 3847 187 93 37 chr13 103357913 103359002 -16385896 + L1MD2 LINE L1 5201 6355 -4 187 322 0 0 chr13 103359400 103359459 -16385439 - L2 LINE L2 0 3313 3255 680 32 11 0 chr13 103360006 103360100 -16384798 + L1P LINE L1 5302 5396 -759 329 258 26 108 chr13 103360253 103360447 -16384451 - L1M4 LINE L1 -2258 3888 3711 667 236 139 3 chr13 103360470 103360758 -16384140 - L1M4 LINE L1 -3435 2711 2385 1923 156 7 10 chr13 103360848 103361155 -16383743 - AluSx SINE Alu -6 306 1 1898 160 3 13 chr13 103361382 103361695 -16383203 + AluJb SINE Alu 1 310 -2 1384 180 75 56 chr13 103361842 103362147 -16382751 + AluJo SINE Alu 2 312 0 2571 42 0 19 chr13 103362433 103362743 -16382155 + AluY SINE Alu 1 304 -7 31 76 0 0 chr13 103362909 103362975 -16381923 + AT_rich Low_complexity Low_complexity 1 66 0 25 31 0 0 chr13 103363191 103363223 -16381675 + AT_rich Low_complexity Low_complexity 1 32 0 1139 280 83 30 chr13 103363505 103363965 -16380933 - L2 LINE L2 -15 3298 2815 516 264 54 6 chr13 103364042 103364209 -16380689 + LTR41 LTR ERVL 4 178 -595 272 237 17 51 chr13 103364616 103364734 -16380164 + LTR41 LTR ERVL 649 762 -11 2217 130 0 32 chr13 103365049 103365394 -16379504 + MER1B DNA MER1_type 4 337 0 430 325 62 29 chr13 103365460 103366032 -16378866 + HERVL LTR ERVL 462 1125 -4639 862 206 0 28 chr13 103366045 103366225 -16378673 + MER58B DNA MER1_type 167 341 0 277 281 12 12 chr13 103366229 103366311 -16378587 + HERVL LTR ERVL 1122 1203 -4561 24 67 0 0 chr13 103366312 103366357 -16378541 + AT_rich Low_complexity Low_complexity 1 45 0 258 246 14 0 chr13 103366374 103366443 -16378455 + HERVL LTR ERVL 1207 1276 -4378 1807 154 3 41 chr13 103366532 103366850 -16378048 + AluJo SINE Alu 1 306 -6 1606 257 73 55 chr13 103367064 103367219 -16377679 + HERVL LTR ERVL 4020 4171 -1314 2281 113 0 0 chr13 103367219 103367519 -16377379 + AluSx SINE Alu 1 300 -12 1606 257 73 55 chr13 103367519 103367997 -16376901 + HERVL LTR ERVL 4171 4682 -803 1972 100 97 0 chr13 103369016 103369295 -16375603 - AluY SINE Alu -5 306 1 2346 90 0 7 chr13 103371032 103371332 -16373566 - AluSg1 SINE Alu -11 298 1 2262 98 10 3 chr13 103372301 103372597 -16372301 + AluSq SINE Alu 1 298 -15 199 262 95 24 chr13 103373279 103373363 -16371535 + L2 LINE L2 3223 3312 -1 233 288 23 45 chr13 103375973 103376105 -16368793 + L3 LINE CR1 1391 1519 -58 338 252 35 52 chr13 103376119 103376234 -16368664 + MER5B DNA MER1_type 2 114 -64 1943 122 11 7 chr13 103376657 103376944 -16367954 - AluSx SINE Alu -24 288 1 24 32 0 0 chr13 103377175 103377206 -16367692 + AT_rich Low_complexity Low_complexity 1 31 0 271 295 36 89 chr13 103377546 103377658 -16367240 + L2 LINE L2 3136 3241 -31 2431 49 0 3 chr13 103378347 103378667 -16366231 - AluY SINE Alu 0 319 1 230 245 0 0 chr13 103378734 103378783 -16366115 + GA-rich Low_complexity Low_complexity 1 49 0 2425 87 3 0 chr13 103378784 103379093 -16365805 - AluSp SINE Alu -3 310 1 237 282 48 51 chr13 103379339 103379711 -16365187 + HAL1 LINE L1 818 1188 -1319 4582 184 40 13 chr13 103379721 103381472 -16363426 + L1MB2 LINE L1 4369 6170 -1 350 297 45 9 chr13 103381475 103381586 -16363312 + HAL1 LINE L1 1187 1301 -1206 286 278 30 15 chr13 103381636 103381769 -16363129 + L1MB8 LINE L1 2946 3080 -3066 541 223 38 65 chr13 103381774 103381958 -16362940 + MER21B LTR ERV1 576 754 -109 2051 199 57 2 chr13 103382002 103382509 -16362389 + L1MB8 LINE L1 4550 5084 -1062 8914 118 59 12 chr13 103382511 103384026 -16360872 - Tigger2 DNA MER2_type 0 2718 1134 3594 121 60 14 chr13 103385242 103386245 -16358653 - Tigger2 DNA MER2_type -1605 1113 1 2345 190 42 26 chr13 103386248 103387166 -16357732 + L1MB8 LINE L1 5088 6168 -10 923 259 64 17 chr13 103387169 103387574 -16357324 + L1ME1 LINE L1 1853 2276 -4120 1045 228 88 7 chr13 103387574 103387846 -16357052 - MER58B DNA MER1_type -1 340 47 455 268 93 0 chr13 103387890 103388084 -16356814 + L1ME1 LINE L1 2231 2442 -3773 1847 151 87 65 chr13 103388097 103388389 -16356509 + MSTA LTR MaLR 4 309 -119 713 157 8 8 chr13 103388389 103388510 -16356388 + L1MB8 LINE L1 6040 6160 -18 1847 151 87 65 chr13 103388510 103388633 -16356265 + MSTA LTR MaLR 309 428 0 8763 185 18 1 chr13 103388633 103390121 -16354777 + MSTA-int LTR MaLR 1 1513 -138 960 87 0 0 chr13 103390115 103390242 -16354656 - MST-int LTR MaLR -12 1639 1513 * 2858 228 108 43 chr13 103390251 103391314 -16353584 + L1ME1 LINE L1 3690 4682 -1553 2455 143 58 31 chr13 103391314 103391728 -16353170 + MSTA LTR MaLR 2 426 -2 2858 228 108 43 chr13 103391728 103392376 -16352522 + L1ME1 LINE L1 4682 5286 -949 2127 134 0 3 chr13 103392376 103392667 -16352231 + AluSx SINE Alu 1 290 -22 2858 228 108 43 chr13 103392667 103392717 -16352181 + L1ME1 LINE L1 5286 6232 -3 1670 168 14 0 chr13 103392840 103393125 -16351773 + AluJo SINE Alu 7 295 -17 25 65 0 0 chr13 103393457 103393503 -16351395 + AT_rich Low_complexity Low_complexity 1 46 0 1475 182 24 20 chr13 103393562 103393859 -16351039 + AluJo SINE Alu 1 298 -14 360 276 159 33 chr13 103394741 103394955 -16349943 - HAL1b LINE L1 -417 931 691 247 260 0 50 chr13 103394994 103395094 -16349804 + L1MC4 LINE L1 6612 6706 -1336 3155 139 17 22 chr13 103395274 103395815 -16349083 - MSTA-int LTR MaLR -1113 538 1 2576 103 86 39 chr13 103395815 103395866 -16349032 - MSTA LTR MaLR 0 428 381 2203 98 0 29 chr13 103395866 103396173 -16348725 - AluSg1 SINE Alu -11 298 1 2576 103 86 39 chr13 103396173 103396530 -16348368 - MSTA LTR MaLR -47 381 1 395 122 49 49 chr13 103396530 103396612 -16348286 + L1PA16 LINE L1 6085 6166 0 240 262 202 0 chr13 103396832 103396916 -16347982 + L2 LINE L2 3168 3268 -4 384 74 4 0 chr13 103397714 103397767 -16347131 + MSTD LTR MaLR 324 383 -13 989 324 57 49 chr13 103397772 103398164 -16346734 - L2 LINE L2 -1707 1607 1207 1792 167 3 22 chr13 103398164 103398481 -16346417 + AluJo SINE Alu 1 311 -1 989 324 57 49 chr13 103398481 103398700 -16346198 - L2 LINE L2 -2107 1207 991 415 237 46 98 chr13 103400003 103400197 -16344701 - L1MA9 LINE L1 -38 6274 6091 777 161 179 12 chr13 103400397 103400559 -16344339 + MER5A DNA MER1_type 1 189 0 189 0 0 0 chr13 103400597 103400618 -16344280 + (A)n Simple_repeat Simple_repeat 1 21 0 197 196 22 22 chr13 103400728 103400774 -16344124 + MIR SINE MIR 106 151 -111 185 145 97 65 chr13 103404026 103404088 -16340810 + MIR SINE MIR 122 185 -77 214 326 53 0 chr13 103404979 103405074 -16339824 - L2 LINE L2 -743 2571 2472 229 311 113 44 chr13 103405147 103405219 -16339679 - L1ME LINE L1 -409 5712 5646 1741 181 13 3 chr13 103405219 103405518 -16339380 + AluJo SINE Alu 1 302 -10 229 311 113 44 chr13 103405518 103405693 -16339205 - L1ME LINE L1 -475 5646 5448 944 203 72 30 chr13 103405844 103406081 -16338817 - MLT1D LTR MaLR -258 247 1 513 163 0 22 chr13 103406081 103406173 -16338725 + MLT1F1 LTR MaLR 36 125 -442 2565 196 56 19 chr13 103406173 103406743 -16338155 + L1MD3 LINE L1 7404 7994 -1 244 193 48 24 chr13 103407468 103407551 -16337347 + L1MEc LINE L1 2226 2310 -4086 10486 156 32 16 chr13 103407565 103409274 -16335624 + L1M1 LINE L1 13 1747 -5818 4073 48 89 2 chr13 103409274 103410210 -16334688 + MER11A LTR ERVK 1 1266 0 5763 116 23 12 chr13 103410238 103411140 -16333758 + L1M1 LINE L1 1756 2667 -4898 6346 149 37 12 chr13 103411247 103412335 -16332563 + MSTA-int LTR MaLR 466 1580 0 621 72 12 0 chr13 103412335 103412418 -16332480 + MSTA LTR MaLR 1 84 -344 4951 200 55 25 chr13 103412426 103412701 -16332197 - L1P5 LINE L1 -558 5598 5333 2397 85 0 0 chr13 103412701 103412995 -16331903 - AluY SINE Alu -17 294 1 4951 200 55 25 chr13 103412995 103414293 -16330605 - L1P5 LINE L1 -823 5333 3962 321 161 0 16 chr13 103414315 103414377 -16330521 + L1 LINE L1 4519 4579 -1567 8456 194 31 25 chr13 103414389 103415254 -16329644 - L1 LINE L1 -1374 4772 3914 1650 156 50 0 chr13 103415254 103415536 -16329362 - AluSx SINE Alu -16 296 1 8456 194 31 25 chr13 103415536 103415655 -16329243 - L1 LINE L1 -2232 3914 3797 381 22 0 0 chr13 103415655 103415701 -16329197 + (TG)n Simple_repeat Simple_repeat 1 46 0 8456 194 31 25 chr13 103415701 103416714 -16328184 - L1 LINE L1 -2349 3797 2761 7232 66 16 28 chr13 103416719 103418481 -16326417 - SVA Other Other -551 1386 51 195 368 0 0 chr13 103419049 103419117 -16325781 - MIR SINE MIR 0 262 195 16567 154 27 8 chr13 103419294 103423279 -16321619 + L1M1 LINE L1 2909 6979 -743 1024 123 58 29 chr13 103423279 103423450 -16321448 + MER1B DNA MER1_type 160 335 -4 1113 224 39 0 chr13 103423650 103423909 -16320989 + L1M4 LINE L1 3556 3824 -2322 1152 246 131 94 chr13 103423943 103424397 -16320501 - L2 LINE L2 -597 2717 2226 2076 108 16 22 chr13 103424397 103424711 -16320187 - AluSx SINE Alu 0 312 1 1152 246 131 94 chr13 103424711 103424966 -16319932 - L2 LINE L2 -1088 2226 1982 2787 114 23 28 chr13 103424971 103425055 -16319843 - MSTA LTR MaLR 0 428 345 2163 134 53 39 chr13 103425055 103425414 -16319484 - THE1B LTR MaLR 0 364 1 2787 114 23 28 chr13 103425414 103425759 -16319139 - MSTA LTR MaLR -83 345 1 376 284 162 0 chr13 103425766 103425914 -16318984 - L2 LINE L2 -1357 1957 1786 212 303 97 48 chr13 103426086 103426314 -16318584 - L2 LINE L2 -1529 1785 1547 231 36 0 0 chr13 103426405 103426433 -16318465 + (A)n Simple_repeat Simple_repeat 1 28 0 1558 218 85 28 chr13 103427763 103428153 -16316745 - MLT1C LTR MaLR -3 464 53 563 296 48 58 chr13 103428508 103428704 -16316194 + L1M4 LINE L1 2673 2870 -3276 2096 129 7 0 chr13 103428704 103428991 -16315907 + AluSx SINE Alu 1 289 -23 563 296 48 58 chr13 103428991 103429278 -16315620 + L1M4 LINE L1 2870 3151 -2995 1963 116 4 4 chr13 103429385 103429660 -16315238 + AluSx SINE Alu 1 275 -37 455 116 0 0 chr13 103429663 103429732 -16315166 + Alu SINE Alu 239 307 -4 2028 123 0 0 chr13 103429920 103430197 -16314701 - AluSx SINE Alu -8 304 28 295 230 230 10 chr13 103430860 103430960 -16313938 + L2 LINE L2 3191 3312 -1 2283 90 0 23 chr13 103431051 103431352 -16313546 - AluSg SINE Alu -16 294 1 4550 166 25 17 chr13 103431369 103432035 -16312863 - L1MB2 LINE L1 -2 6169 5493 2011 118 0 56 chr13 103432035 103432357 -16312541 - AluSx SINE Alu -8 304 1 4550 166 25 17 chr13 103432357 103432560 -16312338 - L1MB2 LINE L1 -678 5493 5293 367 261 0 11 chr13 103432566 103432658 -16312240 + MIR SINE MIR 128 218 -44 2273 103 0 0 chr13 103433045 103433335 -16311563 + AluSq SINE Alu 1 290 -23 227 157 14 0 chr13 103433336 103433406 -16311492 + (TA)n Simple_repeat Simple_repeat 2 72 0 245 269 64 78 chr13 103435302 103435521 -16309377 - L1MC4 LINE L1 -1 8041 7826 1051 211 89 53 chr13 103435561 103435638 -16309260 - L1ME2 LINE L1 -10 6223 6150 1473 180 123 64 chr13 103435638 103436076 -16308822 - MER31B LTR ERV1 0 466 3 1051 211 89 53 chr13 103436076 103436335 -16308563 - L1ME2 LINE L1 -83 6150 5875 1049 194 16 0 chr13 103436337 103436523 -16308375 - MER58A DNA MER1_type -1 223 35 1175 244 84 16 chr13 103436593 103437106 -16307792 - L1ME2 LINE L1 -352 5881 5334 2290 252 110 39 chr13 103437110 103437508 -16307390 - L1ME2 LINE L1 -2260 3955 3587 2148 130 3 16 chr13 103437508 103437824 -16307074 - AluJb SINE Alu 0 312 1 2290 252 110 39 chr13 103437824 103438084 -16306814 - L1ME2 LINE L1 -2628 3587 3347 2416 82 3 3 chr13 103438084 103438387 -16306511 - AluSc SINE Alu -6 303 1 2290 252 110 39 chr13 103438387 103439440 -16305458 - L1ME2 LINE L1 -2868 3347 2136 701 234 8 0 chr13 103439452 103439580 -16305318 - FAM SINE Alu -56 129 1 276 246 23 9 chr13 103439671 103439801 -16305097 - HAL1b LINE L1 -193 2314 794 23 33 0 0 chr13 103440336 103440366 -16304532 + AT_rich Low_complexity Low_complexity 1 30 0 328 322 137 7 chr13 103440403 103440549 -16304349 - HAL1 LINE L1 -643 1864 1700 268 292 189 22 chr13 103441226 103441771 -16303127 - HAL1b LINE L1 -492 856 221 1047 289 88 0 chr13 103441935 103442399 -16302499 + L1M3 LINE L1 2379 2883 -3263 511 297 42 7 chr13 103442406 103442692 -16302206 + L1M3 LINE L1 4519 4814 -1332 226 200 55 0 chr13 103442728 103442783 -16302115 + L1M3 LINE L1 5678 5735 -436 240 35 0 0 chr13 103442927 103442956 -16301942 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 732 147 0 53 chr13 103442961 103443151 -16301747 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 617 175 0 0 chr13 103443169 103443272 -16301626 - FLAM_C SINE Alu -40 103 1 2417 45 0 3 chr13 103444552 103444838 -16300060 + AluY SINE Alu 1 285 -26 1755 299 23 20 chr13 103444987 103445680 -16299218 + ERVL LTR ERVL 4740 5434 -330 2681 230 28 12 chr13 103445680 103446323 -16298575 - MER82 DNA MER2_type 0 653 1 1764 155 73 42 chr13 103446558 103446912 -16297986 - MLT1A1 LTR MaLR 0 365 1 495 221 77 55 chr13 103447050 103447231 -16297667 + L1ME2 LINE L1 5965 6149 -15 331 259 92 23 chr13 103447319 103447450 -16297448 + L1MC4 LINE L1 7884 8023 -19 372 156 65 0 chr13 103447543 103447619 -16297279 - MER3 DNA MER1_type -57 152 72 1715 193 149 31 chr13 103447619 103448142 -16296756 - MER34C LTR ERV1 0 585 1 255 197 0 56 chr13 103448142 103448213 -16296685 - MER3 DNA MER1_type -141 68 2 715 226 105 5 chr13 103448901 103449091 -16295807 + MER34C LTR ERV1 4 212 -373 665 212 0 0 chr13 103449098 103449211 -16295687 + FLAM_A SINE Alu 4 116 -17 1527 168 71 20 chr13 103449230 103449527 -16295371 + AluJb SINE Alu 1 312 0 225 252 200 30 chr13 103449574 103449709 -16295189 - MIR SINE MIR -27 235 78 294 320 94 63 chr13 103450270 103450589 -16294309 + L2 LINE L2 2623 2951 -363 5071 219 105 33 chr13 103450872 103452387 -16292511 + L1PA15-16 LINE L1 1268 2914 -3935 1712 68 0 0 chr13 103452387 103452593 -16292305 + AluY SINE Alu 88 293 -18 5071 219 105 33 chr13 103452593 103452807 -16292091 + L1PA15-16 LINE L1 2914 3111 -3738 22 35 0 0 chr13 103454719 103454748 -16290150 + AT_rich Low_complexity Low_complexity 1 29 0 1740 118 78 0 chr13 103555870 103556125 -16188773 + AluSx SINE Alu 1 275 -37 985 159 0 17 chr13 103556268 103556444 -16188454 + FRAM SINE Alu 1 165 -11 197 65 32 0 chr13 103556533 103556564 -16188334 + (CA)n Simple_repeat Simple_repeat 2 33 0 3657 148 14 71 chr13 103557040 103557769 -16187129 + LTR8 LTR ERV1 1 687 -4 1894 111 44 0 chr13 103557840 103558142 -16186756 + AluSp SINE Alu 1 314 0 180 0 0 0 chr13 103558144 103558164 -16186734 + (TA)n Simple_repeat Simple_repeat 2 21 0 348 24 0 0 chr13 103558172 103558213 -16186685 + (CA)n Simple_repeat Simple_repeat 2 42 0 255 268 127 35 chr13 103558372 103558514 -16186384 - MIR SINE MIR -38 224 70 265 230 27 40 chr13 103559065 103559124 -16185774 - MER58C DNA MER1_type -2230 190 131 1706 166 13 22 chr13 103559124 103559437 -16185461 - AluJo SINE Alu -2 310 1 265 230 27 40 chr13 103559437 103559451 -16185447 - MER58C DNA MER1_type -2289 131 118 570 259 23 23 chr13 103560499 103560673 -16184225 + MIR SINE MIR 2 175 -87 2124 105 3 0 chr13 103560996 103561291 -16183607 - AluSx SINE Alu -9 303 8 211 194 0 0 chr13 103561439 103561475 -16183423 + (CA)n Simple_repeat Simple_repeat 2 37 0 217 284 0 30 chr13 103562250 103562317 -16182581 + MIR SINE MIR 2 66 -196 1752 250 42 57 chr13 103562476 103563149 -16181749 + L1MB7 LINE L1 5512 6174 -10 374 246 115 16 chr13 103563184 103563306 -16181592 + L2 LINE L2 3137 3270 -2 4825 77 15 25 chr13 103563458 103564124 -16180774 + PABL_A LTR ERV1 2 660 0 2261 59 42 0 chr13 103568137 103568425 -16176473 + AluY SINE Alu 1 300 -11 2244 89 6 6 chr13 103569671 103569984 -16174914 - AluSq SINE Alu 0 313 1 1450 189 0 20 chr13 103570036 103570333 -16174565 + AluJo SINE Alu 1 291 -21 289 218 218 20 chr13 103570836 103570937 -16173961 + MIR SINE MIR 20 140 -122 1081 135 6 0 chr13 103571105 103571261 -16173637 - AluSx SINE Alu -155 157 1 669 279 64 19 chr13 103571425 103571690 -16173208 + LTR16C LTR ERVL 215 491 0 248 231 0 0 chr13 103571828 103571880 -16173018 - HsTC2 DNA Tc2 -1816 82 31 253 300 223 23 chr13 103571895 103572025 -16172873 + L2 LINE L2 3117 3272 0 1872 123 17 10 chr13 103572803 103573203 -16171695 + AluSq SINE Alu 1 402 0 2212 114 0 0 chr13 103573374 103573673 -16171225 - AluSx SINE Alu -13 299 1 333 160 11 117 chr13 103574126 103574176 -16170722 + L1M4 LINE L1 4590 4627 -1519 1770 123 16 52 chr13 103574176 103574486 -16170412 - AluSx SINE Alu -13 299 1 333 160 11 117 chr13 103574486 103574529 -16170369 + L1M4 LINE L1 4627 4673 -1473 505 45 0 0 chr13 103576742 103576808 -16168090 + L1MA1 LINE L1 6237 6302 0 25 51 0 0 chr13 103576820 103576859 -16168039 + AT_rich Low_complexity Low_complexity 1 39 0 1794 199 38 30 chr13 103577578 103577971 -16166927 + MSTD LTR MaLR 1 396 0 292 346 28 0 chr13 103582599 103582706 -16162192 + MIR3 SINE MIR 98 207 -1 369 205 325 7 chr13 103584479 103584630 -16160268 + L1MB8 LINE L1 5399 5597 -577 3513 147 92 85 chr13 103584682 103585088 -16159810 - MER54B LTR ERVL -3 790 375 342 203 14 0 chr13 103585088 103585162 -16159736 + L1MA4 LINE L1 6210 6284 -16 3513 147 92 85 chr13 103585162 103585540 -16159358 - MER54B LTR ERVL -418 375 1 2376 166 82 2 chr13 103585540 103586027 -16158871 + L1MB8 LINE L1 5615 6140 -38 815 188 7 0 chr13 103586157 103586301 -16158597 - FRAM SINE Alu -31 145 1 1213 242 180 33 chr13 103586361 103587041 -16157857 + L1MD1 LINE L1 5364 5981 -261 1916 105 56 11 chr13 103587041 103587327 -16157571 - AluSx SINE Alu -13 299 1 1213 242 180 33 chr13 103587327 103587351 -16157547 + L1MD1 LINE L1 5981 6000 -242 23 0 0 0 chr13 103587711 103587734 -16157164 + AT_rich Low_complexity Low_complexity 1 23 0 303 221 137 0 chr13 103588491 103588586 -16156312 - MER20 DNA MER1_type -4 215 108 829 304 102 15 chr13 103591231 103591623 -16153275 + MLT1J2 LTR MaLR 21 446 -4 2157 110 0 13 chr13 103592104 103592405 -16152493 + AluSx SINE Alu 1 297 -15 353 284 138 60 chr13 103592660 103592892 -16152006 - MIR SINE MIR -10 252 3 208 253 0 67 chr13 103595258 103595333 -16149565 + GA-rich Low_complexity Low_complexity 6 75 0 364 297 77 39 chr13 103596479 103596789 -16148109 + L2 LINE L2 1436 1757 -1557 214 345 103 11 chr13 103597248 103597422 -16147476 + L2 LINE L2 2206 2395 -919 192 360 72 9 chr13 103597438 103597549 -16147349 + L2 LINE L2 3138 3255 -17 653 211 111 18 chr13 103597748 103597919 -16146979 - MER5A DNA MER1_type 0 189 3 435 244 219 75 chr13 103598115 103598595 -16146303 + MLT1H LTR MaLR 1 549 0 261 250 159 93 chr13 103598944 103599448 -16145450 + MLT1H LTR MaLR 5 541 -8 719 291 9 0 chr13 103601098 103601311 -16143587 - MIR SINE MIR -13 249 35 683 176 50 0 chr13 103601953 103602072 -16142826 + AluSq/x SINE Alu 1 125 -187 357 269 19 0 chr13 103604331 103604439 -16140459 + L1MD2 LINE L1 5887 5996 -363 273 98 0 0 chr13 103604850 103604891 -16140007 + (CA)n Simple_repeat Simple_repeat 2 42 0 477 246 96 36 chr13 103606717 103606884 -16138014 + MER5B DNA MER1_type 2 178 0 2420 108 0 0 chr13 103607326 103607633 -16137265 + AluSx SINE Alu 1 307 -5 1300 207 43 49 chr13 103607961 103608151 -16136747 - MLT1A1 LTR MaLR -38 327 138 2122 147 121 0 chr13 103608151 103608531 -16136367 + MSTB LTR MaLR 1 426 0 1300 207 43 49 chr13 103608531 103608669 -16136229 - MLT1A1 LTR MaLR -227 138 1 1749 167 34 0 chr13 103609003 103609296 -16135602 + AluJo SINE Alu 1 303 -9 2680 40 0 0 chr13 103609751 103610047 -16134851 + AluY SINE Alu 1 296 -15 443 300 154 13 chr13 103610385 103610618 -16134280 + L2 LINE L2 3005 3270 -2 1357 227 26 3 chr13 103611587 103611891 -16133007 + L1MC1 LINE L1 6023 6333 0 2182 130 0 22 chr13 103612526 103612842 -16132056 + AluSx SINE Alu 1 309 -3 574 233 31 0 chr13 103613299 103613428 -16131470 + FLAM_C SINE Alu 10 142 -1 2380 109 0 0 chr13 103613479 103613791 -16131107 + AluSx SINE Alu 1 312 0 337 143 0 0 chr13 103614046 103614102 -16130796 + Alu SINE Alu 1 56 -246 1302 178 16 79 chr13 103614228 103614560 -16130338 + AluJo SINE Alu 1 313 0 1156 230 52 33 chr13 103614564 103614894 -16130004 + L1ME3A LINE L1 5816 6151 -19 2226 109 0 0 chr13 103614988 103615295 -16129603 - AluSx SINE Alu 0 307 1 350 241 1 0 chr13 103615838 103615951 -16128947 + L1 LINE L1 3675 3788 -2358 2508 82 0 0 chr13 103615953 103616257 -16128641 + AluSx SINE Alu 1 304 -8 2296 99 7 0 chr13 103616480 103616773 -16128125 + AluSx SINE Alu 1 295 -17 2190 113 0 0 chr13 103616853 103617135 -16127763 - AluSg SINE Alu -23 287 6 2431 71 0 0 chr13 103617370 103617665 -16127233 - AluY SINE Alu -16 295 1 503 285 154 28 chr13 103617742 103618416 -16126482 - L1M4 LINE L1 -2712 3434 2676 26 74 0 0 chr13 103618604 103618658 -16126240 + AT_rich Low_complexity Low_complexity 1 54 0 1416 80 5 0 chr13 103618779 103618967 -16125931 + AluY SINE Alu 122 310 -1 2488 65 0 7 chr13 103619041 103619335 -16125563 - AluY SINE Alu -13 298 7 274 352 96 10 chr13 103619557 103619756 -16125142 + MLT1K LTR MaLR 174 389 -199 231 271 58 45 chr13 103620516 103620671 -16124227 + L2 LINE L2 2156 2312 -1002 277 362 104 48 chr13 103621123 103621535 -16123363 + L2 LINE L2 2806 3240 -32 1891 91 55 81 chr13 103622242 103622549 -16122349 + AluSp SINE Alu 1 299 -14 2431 124 25 0 chr13 103622566 103622921 -16121977 + THE1B LTR MaLR 1 364 0 661 137 23 76 chr13 103623220 103623351 -16121547 + FLAM_A SINE Alu 1 124 -9 317 230 200 0 chr13 103623377 103623477 -16121421 + MER46C DNA MER2_type 2 121 -217 2030 113 55 7 chr13 103623956 103624194 -16120704 + AluSx SINE Alu 1 257 -55 189 94 0 0 chr13 103624194 103624226 -16120672 + (CACTC)n Simple_repeat Simple_repeat 1 32 0 2030 113 55 7 chr13 103624226 103624278 -16120620 + AluSx SINE Alu 257 305 -7 1980 132 11 0 chr13 103624660 103624961 -16119937 + AluSx SINE Alu 1 304 0 2196 108 13 16 chr13 103625054 103625361 -16119537 + AluSx SINE Alu 1 306 -6 2329 102 0 10 chr13 103625992 103626306 -16118592 + AluY SINE Alu 1 311 0 2540 60 0 7 chr13 103626934 103627233 -16117665 + AluY SINE Alu 1 297 -14 687 208 0 8 chr13 103628122 103628247 -16116651 + FLAM_A SINE Alu 7 130 -12 463 260 97 39 chr13 103628527 103628681 -16116217 + MER5A DNA MER1_type 1 163 -26 2255 105 3 13 chr13 103628703 103629007 -16115891 + AluSq SINE Alu 1 301 -12 275 303 119 0 chr13 103629774 103629883 -16115015 + MIR SINE MIR 20 141 -121 296 262 134 74 chr13 103631202 103631397 -16113501 + HAL1 LINE L1 34 216 -2291 2215 109 10 0 chr13 103631397 103631690 -16113208 - AluSx SINE Alu -16 296 1 296 262 134 74 chr13 103631690 103631979 -16112919 + HAL1 LINE L1 216 547 -1960 2178 121 0 7 chr13 103631979 103632286 -16112612 + AluSx SINE Alu 1 305 -7 974 286 77 44 chr13 103632287 103632926 -16111972 + HAL1 LINE L1 1195 1854 -653 227 327 50 62 chr13 103633095 103633272 -16111626 + HAL1 LINE L1 2140 2313 -194 2296 103 0 7 chr13 103633272 103633573 -16111325 - AluSx SINE Alu -13 299 1 227 327 50 62 chr13 103633573 103633734 -16111164 + HAL1 LINE L1 2313 2474 -33 441 234 263 19 chr13 103636322 103636427 -16108471 - MER112 DNA MER1_type -5 255 177 994 102 267 5 chr13 103636427 103636614 -16108284 + MER46A DNA MER2_type 1 236 0 441 234 263 19 chr13 103636614 103636713 -16108185 - MER112 DNA MER1_type -83 177 1 220 283 106 27 chr13 103637211 103637367 -16107531 + MIR SINE MIR 26 187 -65 2187 104 0 3 chr13 103637469 103637758 -16107140 - AluSg SINE Alu -2 308 21 318 50 0 0 chr13 103638848 103638888 -16106010 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr13 103640158 103640183 -16104715 + GC_rich Low_complexity Low_complexity 1 25 0 48 91 0 0 chr13 103640278 103640410 -16104488 + GC_rich Low_complexity Low_complexity 1 132 0 24 53 0 0 chr13 103640561 103640599 -16104299 + GC_rich Low_complexity Low_complexity 1 38 0 573 273 108 27 chr13 103641703 103642036 -16102862 + L1ME4a LINE L1 5595 5954 -167 1714 147 11 0 chr13 103642049 103642315 -16102583 - Tigger3(Golem) DNA MER2_type 0 3038 2770 2233 147 13 35 chr13 103643924 103644137 -16100761 - MLT1B LTR MaLR -4 386 185 1832 108 47 7 chr13 103644137 103644455 -16100443 - AluSx SINE Alu 0 312 1 2233 147 13 35 chr13 103644455 103644636 -16100262 - MLT1B LTR MaLR -205 185 1 392 281 59 59 chr13 103645786 103646024 -16098874 - MLT1K LTR MaLR -2 586 349 1764 221 67 60 chr13 103646845 103646956 -16097942 - MER119 DNA MER1_type 0 583 474 1931 130 0 30 chr13 103646956 103647257 -16097641 + AluSx SINE Alu 1 292 -20 1764 221 67 60 chr13 103647257 103647724 -16097174 - MER119 DNA MER1_type -109 474 1 638 213 104 24 chr13 103648110 103648274 -16096624 - MER45A DNA AcHobo 0 178 2 816 206 0 0 chr13 103649162 103649308 -16095590 - FRAM SINE Alu -30 146 1 293 289 56 0 chr13 103649330 103649420 -16095478 - MLT1K LTR MaLR -7 581 487 453 332 37 12 chr13 103649472 103649713 -16095185 - MLT1K LTR MaLR -106 482 236 1051 230 14 5 chr13 103649961 103650183 -16094715 - MER58A DNA MER1_type 0 224 1 2069 113 10 10 chr13 103650696 103651007 -16093891 + AluSx SINE Alu 1 311 -1 780 161 0 8 chr13 103651007 103651125 -16093773 + AluJb SINE Alu 134 250 -62 1015 159 18 41 chr13 103651125 103651345 -16093553 + AluJo SINE Alu 85 299 -13 1979 131 3 6 chr13 103651366 103651679 -16093219 + AluSx SINE Alu 1 312 0 354 384 53 53 chr13 103651686 103652082 -16092816 + L1ME3A LINE L1 5527 5922 -248 32 0 0 0 chr13 103652587 103652619 -16092279 + AT_rich Low_complexity Low_complexity 1 32 0 567 107 0 0 chr13 103652757 103652841 -16092057 - AluS SINE Alu -227 85 2 246 286 0 0 chr13 103652859 103652915 -16091983 + L1MEd LINE L1 598 653 -5466 625 117 0 0 chr13 103653228 103653322 -16091576 + AluY SINE Alu 218 311 0 229 26 26 26 chr13 103653356 103653395 -16091503 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 2085 116 0 0 chr13 103653420 103653722 -16091176 + AluSx SINE Alu 1 302 -10 204 97 0 0 chr13 103653768 103653799 -16091099 + (TG)n Simple_repeat Simple_repeat 1 31 0 702 238 77 80 chr13 103653821 103654120 -16090778 + L1ME3A LINE L1 5864 6161 -9 1478 182 59 3 chr13 103654146 103654432 -16090466 + AluJb SINE Alu 5 306 -6 2098 108 0 13 chr13 103654569 103654884 -16090014 + AluSx SINE Alu 1 311 -1 252 311 258 33 chr13 103654901 103655145 -16089753 + L3b LINE CR1 1282 1580 -3 1384 292 95 25 chr13 103655301 103656173 -16088725 - L2 LINE L2 -3 3310 2371 2050 120 0 3 chr13 103656271 103656570 -16088328 - AluSx SINE Alu -14 298 1 1009 199 48 0 chr13 103656663 103656914 -16087984 - L1MB3 LINE L1 0 6183 5921 466 179 24 0 chr13 103657597 103657681 -16087217 + MER3 DNA MER1_type 5 90 -119 201 328 0 0 chr13 103657712 103657770 -16087128 - MIR3 SINE MIR -42 166 109 2186 112 3 3 chr13 103657778 103658091 -16086807 + AluSq SINE Alu 1 313 0 1476 133 84 39 chr13 103658099 103658385 -16086513 + AluJb SINE Alu 1 299 -13 1144 309 140 62 chr13 103659059 103659205 -16085693 + L2 LINE L2 1073 1206 -2108 396 0 0 0 chr13 103659205 103659249 -16085649 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 745 175 0 0 chr13 103659254 103659380 -16085518 - FLAM_C SINE Alu -7 126 1 1144 309 140 62 chr13 103659380 103659799 -16085099 + L2 LINE L2 1209 1594 -1720 2223 93 3 0 chr13 103659799 103660101 -16084797 + AluSg1 SINE Alu 1 303 -6 1144 309 140 62 chr13 103660101 103660498 -16084400 + L2 LINE L2 1594 1959 -1355 2347 70 3 0 chr13 103660498 103660800 -16084098 - AluY SINE Alu -7 304 2 258 56 0 0 chr13 103660800 103660836 -16084062 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1841 133 3 7 chr13 103660836 103661121 -16083777 - AluSx SINE Alu -28 284 1 1144 309 140 62 chr13 103661121 103661558 -16083340 + L2 LINE L2 1958 2591 -723 226 232 18 18 chr13 103661569 103661625 -16083273 + MER5A DNA MER1_type 15 70 -119 2031 127 0 0 chr13 103661632 103661946 -16082952 + AluSx SINE Alu 1 314 0 310 245 238 0 chr13 103662035 103662178 -16082720 + L2 LINE L2 2597 2773 -541 1666 179 10 0 chr13 103663191 103663481 -16081417 - AluJo SINE Alu -15 297 5 1306 210 3 26 chr13 103663633 103663943 -16080955 + L1MB8 LINE L1 5875 6177 -1 22 35 0 0 chr13 103663944 103663973 -16080925 + AT_rich Low_complexity Low_complexity 1 29 0 487 223 10 96 chr13 103664032 103664229 -16080669 - HAL1 LINE L1 -181 2326 2147 2660 255 33 36 chr13 103664229 103664993 -16079905 + L2 LINE L2 2226 2990 -323 2214 100 0 0 chr13 103664993 103665292 -16079606 - AluSx SINE Alu -13 299 1 2660 255 33 36 chr13 103665292 103665485 -16079413 + L2 LINE L2 2990 3182 -131 2869 114 35 58 chr13 103665490 103665664 -16079234 + HSMAR2 DNA Mariner 1 178 -1124 3032 63 5 2 chr13 103665664 103666095 -16078803 + L1PA5 LINE L1 5760 6154 0 2869 114 35 58 chr13 103666095 103666342 -16078556 + HSMAR2 DNA Mariner 178 410 -892 2051 119 3 3 chr13 103666342 103666653 -16078245 + AluY SINE Alu 1 311 0 2869 114 35 58 chr13 103666653 103666747 -16078151 + HSMAR2 DNA Mariner 410 505 -797 1891 244 23 53 chr13 103666747 103667185 -16077713 - L1MC4 LINE L1 -971 7071 6652 1931 138 0 3 chr13 103667185 103667481 -16077417 - AluSx SINE Alu -17 295 1 1891 244 23 53 chr13 103667481 103667603 -16077295 - L1MC4 LINE L1 -1390 6652 6528 335 176 0 0 chr13 103667603 103667654 -16077244 - L1MC4 LINE L1 -1346 6696 6646 589 217 85 35 chr13 103667685 103667943 -16076955 + L1M4 LINE L1 4877 5147 -999 315 203 54 0 chr13 103667948 103668022 -16076876 - MLT1A2 LTR MaLR -240 134 57 551 275 115 15 chr13 103668173 103668520 -16076378 - L1 LINE L1 -3121 3025 2651 28 79 0 0 chr13 103668675 103668738 -16076160 + AT_rich Low_complexity Low_complexity 1 63 0 343 313 30 106 chr13 103668812 103668927 -16075971 - HAL1b LINE L1 -891 457 372 1954 136 3 3 chr13 103668927 103669222 -16075676 + AluSx SINE Alu 1 295 -17 343 313 30 106 chr13 103669222 103669371 -16075527 - HAL1b LINE L1 -976 372 213 461 332 21 16 chr13 103669373 103669560 -16075338 + MIR SINE MIR 74 261 -1 237 151 0 68 chr13 103669818 103669891 -16075007 - L1ME4a LINE L1 -7 6114 6047 2043 128 0 10 chr13 103670119 103670423 -16074475 + AluSg SINE Alu 3 303 -7 2203 99 0 10 chr13 103671094 103671398 -16073500 + AluSg SINE Alu 3 303 -7 1009 280 149 9 chr13 103671624 103672060 -16072838 + MLT1J LTR MaLR 15 511 0 1700 130 56 4 chr13 103672291 103672595 -16072303 + AluJb SINE Alu 1 318 0 289 209 116 16 chr13 103672598 103672727 -16072171 - L1ME4a LINE L1 -270 5851 5710 524 316 63 13 chr13 103672736 103672973 -16071925 + MIR SINE MIR 9 257 -5 313 367 41 7 chr13 103673079 103673255 -16071643 - MIR SINE MIR -67 141 16 1121 199 121 11 chr13 103673329 103673450 -16071448 + AluJo SINE Alu 6 112 -200 315 0 0 0 chr13 103673450 103673485 -16071413 + (TG)n Simple_repeat Simple_repeat 2 36 0 1121 199 121 11 chr13 103673485 103673635 -16071263 + AluJo SINE Alu 112 307 -5 451 316 43 32 chr13 103673795 103673982 -16070916 + MIR3 SINE MIR 11 199 -9 1710 170 3 7 chr13 103674117 103674417 -16070481 - AluJo SINE Alu -13 299 1 1651 174 0 14 chr13 103674626 103674920 -16069978 - AluJo SINE Alu -22 290 1 2267 96 3 0 chr13 103674993 103675294 -16069604 - AluSg SINE Alu -8 302 1 891 194 102 10 chr13 103675681 103675877 -16069021 + MER20 DNA MER1_type 3 216 -3 338 315 0 18 chr13 103677991 103678102 -16066796 + MER5A DNA MER1_type 73 181 -8 242 143 0 79 chr13 103678247 103678310 -16066588 + (TAAAAA)n Simple_repeat Simple_repeat 3 60 0 961 211 41 0 chr13 103678535 103678729 -16066169 - MIR SINE MIR -2 260 59 220 275 0 0 chr13 103679090 103679161 -16065737 + MIR SINE MIR 39 108 -119 257 247 65 13 chr13 103679187 103679264 -16065634 - MER5B DNA MER1_type -97 81 1 187 261 29 43 chr13 103679928 103679997 -16064901 + MIR SINE MIR 151 218 -44 1690 21 0 0 chr13 103680176 103680369 -16064529 + AluY SINE Alu 108 300 -11 987 202 27 5 chr13 103680369 103680592 -16064306 + L1ME1 LINE L1 4656 4883 -1263 250 290 0 0 chr13 103681337 103681399 -16063499 + (TG)n Simple_repeat Simple_repeat 1 62 0 228 86 0 0 chr13 103681678 103681713 -16063185 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 2283 68 0 0 chr13 103681713 103682007 -16062891 - AluSg SINE Alu -16 294 1 778 132 0 22 chr13 103682007 103682143 -16062755 - FLAM_A SINE Alu 0 142 10 2023 109 3 0 chr13 103682745 103683029 -16061869 + AluSx SINE Alu 11 295 -17 21 0 0 0 chr13 103683184 103683205 -16061693 + AT_rich Low_complexity Low_complexity 1 21 0 2561 224 30 27 chr13 103683562 103684184 -16060714 + L1ME1 LINE L1 4857 5476 -690 2125 108 10 0 chr13 103684184 103684480 -16060418 + AluSx SINE Alu 1 299 -13 2561 224 30 27 chr13 103684480 103684774 -16060124 + L1ME1 LINE L1 5476 5787 -379 2262 88 3 0 chr13 103684774 103685069 -16059829 + AluSp SINE Alu 1 296 -17 2561 224 30 27 chr13 103685069 103685237 -16059661 + L1ME1 LINE L1 5787 5953 -213 200 184 0 0 chr13 103685494 103685532 -16059366 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 322 301 39 50 chr13 103685532 103685709 -16059189 + L1MC4 LINE L1 6583 6705 -1337 2070 109 3 13 chr13 103686182 103686486 -16058412 - AluSq SINE Alu -12 301 1 451 260 97 39 chr13 103686508 103686662 -16058236 - MER5A DNA MER1_type -26 163 1 668 205 0 8 chr13 103686945 103687067 -16057831 - FLAM_A SINE Alu -15 127 7 2105 106 0 10 chr13 103687956 103688257 -16056641 - AluSx SINE Alu -14 298 1 1163 283 37 5 chr13 103688350 103688732 -16056166 + L1ME3A LINE L1 5372 5765 -405 1593 174 10 7 chr13 103688732 103689020 -16055878 + AluJo SINE Alu 1 289 -23 360 77 0 0 chr13 103689026 103689078 -16055820 + (CA)n Simple_repeat Simple_repeat 2 53 0 1376 174 4 26 chr13 103689165 103689277 -16055621 + AluJo SINE Alu 27 140 -173 1827 143 38 0 chr13 103689277 103689564 -16055334 + AluSx SINE Alu 1 298 -14 1376 174 4 26 chr13 103689564 103689744 -16055154 + AluJo SINE Alu 140 313 0 1229 230 52 33 chr13 103689748 103690078 -16054820 + L1ME3A LINE L1 5816 6151 -19 2052 102 0 7 chr13 103690172 103690481 -16054417 - AluSx SINE Alu 0 307 1 253 300 223 23 chr13 103691259 103691389 -16053509 - L2 LINE L2 0 3272 3117 248 231 0 0 chr13 103691404 103691456 -16053442 + HsTC2 DNA Tc2 31 82 -1816 669 279 64 19 chr13 103691594 103691859 -16053039 - LTR16C LTR ERVL 0 491 215 2165 121 3 0 chr13 103692023 103692330 -16052568 + AluSx SINE Alu 1 308 -4 1202 181 8 53 chr13 103692366 103692595 -16052303 + L1ME3 LINE L1 5691 5908 -254 1760 154 20 20 chr13 103692595 103692894 -16052004 - AluJo SINE Alu -13 299 1 1202 181 8 53 chr13 103692894 103692930 -16051968 + L1ME3 LINE L1 5908 5944 -218 1853 193 135 7 chr13 103693089 103693212 -16051686 + L1MC4 LINE L1 6531 6637 -1405 237 65 0 0 chr13 103693212 103693243 -16051655 + (CA)n Simple_repeat Simple_repeat 1 31 0 1853 193 135 7 chr13 103693243 103693555 -16051343 + L1MC4 LINE L1 6637 7022 -1020 2065 119 0 3 chr13 103693801 103694095 -16050803 + AluSg SINE Alu 2 294 -16 883 215 0 11 chr13 103694400 103694567 -16050331 - AluJb SINE Alu -12 300 134 1976 120 31 0 chr13 103694567 103694858 -16050040 - AluSg SINE Alu -10 300 1 883 215 0 11 chr13 103694858 103694876 -16050022 - AluJb SINE Alu -178 134 117 1516 185 0 17 chr13 103695385 103695672 -16049226 + AluJo SINE Alu 1 282 -30 383 285 202 5 chr13 103695786 103695979 -16048919 - L3 LINE CR1 -42 1535 1305 1820 133 55 0 chr13 103696097 103696390 -16048508 - AluSx SINE Alu -3 309 1 2257 78 0 3 chr13 103696506 103696801 -16048097 + AluY SINE Alu 1 294 -17 2025 128 0 3 chr13 103697093 103697391 -16047507 + AluSq SINE Alu 1 297 -16 2178 92 3 3 chr13 103697811 103698104 -16046794 - AluSp SINE Alu -20 293 1 396 0 0 0 chr13 103698238 103698282 -16046616 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 98 20 0 chr13 103698460 103698511 -16046387 + AluSp SINE Alu 97 148 -155 653 128 0 0 chr13 103698512 103698606 -16046292 + AluY SINE Alu 212 305 -6 226 197 0 28 chr13 103699029 103699100 -16045798 + LTR16A1 LTR ERVL 352 420 -37 34 55 0 0 chr13 103699555 103699610 -16045288 + AT_rich Low_complexity Low_complexity 1 55 0 205 328 30 0 chr13 103700071 103700138 -16044760 + MIR3 SINE MIR 98 166 -42 2174 81 0 33 chr13 103700174 103700481 -16044417 + AluSc SINE Alu 1 297 -12 2047 134 7 0 chr13 103700636 103700941 -16043957 - AluSx SINE Alu -5 307 1 279 190 0 0 chr13 103701260 103701318 -16043580 + G-rich Low_complexity Low_complexity 5 62 0 1541 246 16 11 chr13 103701327 103701701 -16043197 + HsTC2c DNA Tc2 351 726 -3 351 304 52 9 chr13 103701701 103701816 -16043082 - MIR SINE MIR -111 151 32 1966 135 3 10 chr13 103702140 103702307 -16042591 - AluSx SINE Alu -11 301 135 2177 117 0 0 chr13 103702307 103702607 -16042291 - AluSg SINE Alu -10 300 1 1966 135 3 10 chr13 103702607 103702742 -16042156 - AluSx SINE Alu -177 135 1 201 74 0 0 chr13 103702961 103702988 -16041910 + (T)n Simple_repeat Simple_repeat 1 27 0 1776 161 23 0 chr13 103703020 103703325 -16041573 - AluJo SINE Alu 0 312 1 346 124 18 62 chr13 103703531 103703609 -16041289 + AluS SINE Alu 231 289 -12 2139 106 0 7 chr13 103703714 103704016 -16040882 - AluY SINE Alu -11 300 1 2073 101 7 0 chr13 103704822 103705109 -16039789 - AluSx SINE Alu 0 312 24 2228 100 0 0 chr13 103705329 103705628 -16039270 - AluSx SINE Alu -13 299 1 1953 116 49 0 chr13 103705628 103705912 -16038986 - AluSx SINE Alu -14 298 1 394 330 104 47 chr13 103706002 103706137 -16038761 + L2 LINE L2 2242 2368 -946 2233 86 10 0 chr13 103706137 103706439 -16038459 - AluY SINE Alu -6 305 1 394 330 104 47 chr13 103706439 103706831 -16038067 + L2 LINE L2 2368 2799 -515 1499 135 62 56 chr13 103707076 103707380 -16037518 - AluJo SINE Alu -6 306 1 2251 63 0 33 chr13 103707391 103707690 -16037208 - AluY SINE Alu -22 289 1 536 282 60 0 chr13 103707752 103707901 -16036997 - MIR SINE MIR -56 206 49 27 0 0 0 chr13 103708136 103708163 -16036735 + AT_rich Low_complexity Low_complexity 1 27 0 1951 102 7 14 chr13 103708346 103708668 -16036230 - AluSx SINE Alu 0 320 1 1210 251 166 22 chr13 103708670 103709278 -16035620 - L1MC4a LINE L1 -784 5549 5254 2809 229 72 34 chr13 103709380 103709824 -16035074 - L1ME1 LINE L1 -1 6165 5739 2068 105 13 16 chr13 103709824 103710130 -16034768 + AluSx SINE Alu 1 305 -7 2809 229 72 34 chr13 103710130 103711274 -16033624 - L1ME1 LINE L1 -427 5739 4523 578 184 20 0 chr13 103711274 103711372 -16033526 - AluJb SINE Alu -25 287 188 791 242 34 44 chr13 103711699 103711992 -16032906 - L1ME1 LINE L1 -1741 4405 4116 2247 115 0 0 chr13 103712063 103712375 -16032523 - AluSx SINE Alu 0 312 1 1589 127 16 0 chr13 103712377 103712630 -16032268 - L1PA13 LINE L1 -4 6159 5903 2055 112 0 16 chr13 103712797 103713101 -16031797 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr13 103713223 103713251 -16031647 + AT_rich Low_complexity Low_complexity 1 28 0 2063 126 0 0 chr13 103713352 103713646 -16031252 - AluSx SINE Alu -18 294 1 1179 280 37 5 chr13 103713739 103714121 -16030777 + L1ME LINE L1 5372 5765 -405 1442 178 21 14 chr13 103714121 103714408 -16030490 + AluJo SINE Alu 1 289 -23 468 0 0 0 chr13 103714414 103714466 -16030432 + (CA)n Simple_repeat Simple_repeat 2 53 0 347 88 0 18 chr13 103714636 103714693 -16030205 + (CA)n Simple_repeat Simple_repeat 2 57 0 2181 106 0 0 chr13 103714737 103715040 -16029858 + AluSx SINE Alu 1 303 -9 728 225 25 6 chr13 103715427 103715587 -16029311 - MER5A DNA MER1_type -25 164 2 252 0 0 0 chr13 103715818 103715846 -16029052 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2026 102 21 0 chr13 103715870 103716154 -16028744 - AluSg SINE Alu -15 295 6 778 132 0 22 chr13 103716158 103716294 -16028604 - FLAM_A SINE Alu 0 142 10 2157 97 3 16 chr13 103716909 103717042 -16027856 + AluSg SINE Alu 1 134 -176 2167 121 0 0 chr13 103717042 103717355 -16027543 + AluSq SINE Alu 1 313 0 2157 97 3 16 chr13 103717355 103717530 -16027368 + AluSg SINE Alu 134 305 -5 2050 119 0 25 chr13 103718560 103718878 -16026020 + AluSx SINE Alu 3 312 0 2344 110 27 0 chr13 103718974 103719302 -16025596 - MER1B DNA MER1_type 0 337 1 1694 169 3 3 chr13 103719667 103719957 -16024941 - AluJb SINE Alu -9 303 14 1896 232 107 8 chr13 103720535 103721040 -16023858 - MER89 LTR ERV1 -4 555 1 2083 106 7 7 chr13 103721081 103721384 -16023514 + AluY SINE Alu 1 303 -8 590 175 21 35 chr13 103722307 103722450 -16022448 - MER67C LTR ERV1 0 710 570 873 190 154 71 chr13 103722464 103722657 -16022241 - MER67C LTR ERV1 -367 343 113 2320 94 0 7 chr13 103722657 103722964 -16021934 + AluSx SINE Alu 1 305 -7 873 190 154 71 chr13 103722964 103723081 -16021817 - MER67C LTR ERV1 -597 113 7 445 134 0 0 chr13 103723334 103723401 -16021497 - MER41A LTR ERV1 0 554 488 435 129 0 43 chr13 103723408 103723513 -16021385 + AluSc SINE Alu 214 315 0 575 130 11 11 chr13 103723516 103723608 -16021290 - MER41C LTR ERV1 -121 433 342 306 234 0 93 chr13 103723609 103723716 -16021182 + L1MC4 LINE L1 6607 6703 -1339 375 229 25 0 chr13 103723721 103723839 -16021059 + (TA)n Simple_repeat Simple_repeat 2 122 0 2158 129 44 0 chr13 103723841 103724181 -16020717 - MER41C LTR ERV1 -199 355 1 199 343 0 14 chr13 103724712 103724785 -16020113 - L2 LINE L2 -1 3312 3241 1783 101 8 8 chr13 103726803 103727061 -16017837 + AluSq SINE Alu 1 258 -55 180 152 0 0 chr13 103727156 103727189 -16017709 + CT-rich Low_complexity Low_complexity 1 33 0 1618 217 58 92 chr13 103727191 103727287 -16017611 - L1MC4 LINE L1 -205 7837 7739 2155 113 0 0 chr13 103727287 103727587 -16017311 + AluSg SINE Alu 3 302 -8 1618 217 58 92 chr13 103727587 103728094 -16016804 - L1MC4 LINE L1 -303 7739 7253 1776 135 56 126 chr13 103728094 103728538 -16016360 - MLT2D LTR ERVL 0 414 2 1618 217 58 92 chr13 103728538 103728555 -16016343 - L1MC4 LINE L1 -789 7253 7237 286 302 52 44 chr13 103728626 103728878 -16016020 - L1 LINE L1 -1131 5015 4762 1283 252 111 14 chr13 103728893 103729306 -16015592 + LTR40b LTR ERVL 8 460 -2 1610 123 9 0 chr13 103730594 103730821 -16014077 + MER4A LTR ERV1 436 664 0 1004 66 7 0 chr13 103730822 103730958 -16013940 - L1P4 LINE L1 -376 5787 5651 2325 246 60 49 chr13 103730963 103731292 -16013606 + HAL1 LINE L1 816 1140 -1367 2213 84 7 19 chr13 103731292 103731600 -16013298 + AluSx SINE Alu 1 304 -8 2325 246 60 49 chr13 103731600 103732000 -16012898 + HAL1 LINE L1 1140 1561 -946 1977 159 0 0 chr13 103732000 103732308 -16012590 + 7SLRNA srpRNA srpRNA 2 309 -11 2325 246 60 49 chr13 103732308 103732552 -16012346 + HAL1 LINE L1 1561 1801 -706 300 186 17 0 chr13 103732831 103732890 -16012008 + L2 LINE L2 3254 3313 0 362 250 110 30 chr13 103733551 103733651 -16011247 + L2 LINE L2 3197 3304 -9 186 226 132 0 chr13 103733676 103733729 -16011169 - MIR SINE MIR -20 242 183 271 225 350 0 chr13 103733729 103733809 -16011089 - MER81 DNA DNA 0 114 7 435 250 78 57 chr13 103733816 103734008 -16010890 - MIR SINE MIR -66 196 1 655 224 72 20 chr13 103734421 103734616 -16010282 + MIR SINE MIR 15 219 -37 746 233 165 37 chr13 103734638 103734811 -16010087 + L2 LINE L2 2474 2623 -691 1766 148 6 28 chr13 103734811 103735128 -16009770 - AluJo SINE Alu 0 312 3 746 233 165 37 chr13 103735128 103735336 -16009562 + L2 LINE L2 2623 2904 -410 418 282 136 69 chr13 103735367 103735832 -16009066 + L2 LINE L2 2812 3307 -6 222 284 156 18 chr13 103735882 103735991 -16008907 - MIR SINE MIR -80 182 59 243 103 0 0 chr13 103736341 103736380 -16008518 + (CACG)n Simple_repeat Simple_repeat 1 39 0 2149 114 0 0 chr13 103736760 103737067 -16007831 - AluSq SINE Alu -6 307 1 2546 154 29 0 chr13 103737172 103737581 -16007317 + MSTB LTR MaLR 1 421 -5 443 156 10 10 chr13 103738101 103738197 -16006701 + L1MB3 LINE L1 5986 6081 -102 * 619 186 8 8 chr13 103738194 103738323 -16006575 + L1MB3 LINE L1 6046 6174 -9 2057 99 10 3 chr13 103738323 103738615 -16006283 - AluSq SINE Alu -19 294 1 21 0 0 0 chr13 103738626 103738647 -16006251 + AT_rich Low_complexity Low_complexity 1 21 0 617 286 25 15 chr13 103739211 103739410 -16005488 + MIR SINE MIR 1 201 -61 478 285 23 52 chr13 103739486 103739658 -16005240 + MIR SINE MIR 86 252 -10 2084 89 0 57 chr13 103739702 103740017 -16004881 + AluSq SINE Alu 1 297 -16 1639 174 31 0 chr13 103740024 103740317 -16004581 + AluJb SINE Alu 1 302 -10 2182 111 0 0 chr13 103740493 103740790 -16004108 + AluSx SINE Alu 1 297 -15 203 128 154 0 chr13 103741439 103741478 -16003420 - L2 LINE L2 -5 3267 3223 2419 87 3 3 chr13 103741496 103741806 -16003092 - AluSx SINE Alu -2 310 1 197 265 96 36 chr13 103741844 103741927 -16002971 - MIR SINE MIR -111 151 64 1580 149 94 28 chr13 103741932 103742220 -16002678 + AluJo SINE Alu 1 307 -5 736 113 23 34 chr13 103743066 103743189 -16001709 + (TCTA)n Simple_repeat Simple_repeat 1 124 -437 2504 80 0 0 chr13 103743189 103743491 -16001407 - AluY SINE Alu -9 302 1 736 113 23 34 chr13 103743491 103743634 -16001264 + (TCTA)n Simple_repeat Simple_repeat 124 561 0 195 42 0 0 chr13 103743656 103743680 -16001218 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 2373 90 10 0 chr13 103744258 103744568 -16000330 + AluSq SINE Alu 1 313 0 2189 118 16 0 chr13 103745701 103746005 -15998893 + AluSc SINE Alu 1 309 0 1183 148 21 0 chr13 103746927 103747116 -15997782 - AluJo SINE Alu 0 312 120 21 0 0 0 chr13 103747116 103747137 -15997761 + AT_rich Low_complexity Low_complexity 1 21 0 2251 111 0 0 chr13 103748933 103749231 -15995667 - AluSx SINE Alu -14 298 1 1707 181 0 23 chr13 103749437 103749741 -15995157 - AluJo SINE Alu -15 297 1 1069 228 8 4 chr13 103750609 103750855 -15994043 - Tigger3(Golem) DNA MER2_type 0 3029 2783 2917 168 63 45 chr13 103750857 103751037 -15993861 - L1MB8 LINE L1 -172 6006 5831 2120 106 20 7 chr13 103751037 103751330 -15993568 - AluY SINE Alu -14 297 1 2917 168 63 45 chr13 103751330 103751492 -15993406 - L1MB8 LINE L1 -347 5831 5673 2172 159 114 57 chr13 103751492 103751783 -15993115 + LTR44 LTR ERV1 1 274 -245 2484 83 3 0 chr13 103751783 103752085 -15992813 + AluSp SINE Alu 1 303 -10 2172 159 114 57 chr13 103752085 103752133 -15992765 + LTR44 LTR ERV1 274 318 -201 2052 158 0 16 chr13 103752133 103752450 -15992448 - AluJo SINE Alu 0 312 1 2172 159 114 57 chr13 103752450 103752600 -15992298 + LTR44 LTR ERV1 318 519 0 2917 168 63 45 chr13 103752600 103752729 -15992169 - L1MB8 LINE L1 -505 5673 5548 1742 159 30 10 chr13 103752729 103753030 -15991868 - AluJb SINE Alu -5 307 1 2917 168 63 45 chr13 103753030 103753079 -15991819 - L1MB8 LINE L1 -630 5548 5501 2513 87 0 0 chr13 103753079 103753389 -15991509 - AluSq SINE Alu -3 310 1 2917 168 63 45 chr13 103753389 103753758 -15991140 - L1MB8 LINE L1 -677 5501 5103 442 196 62 18 chr13 103753788 103753900 -15990998 + MER4A LTR ERV1 1 117 -547 442 110 159 0 chr13 103754014 103754112 -15990786 - L1MB8 LINE L1 -1133 5013 4902 670 192 78 39 chr13 103754182 103754556 -15990342 + Charlie7 DNA MER1_type 2192 2612 0 332 273 77 31 chr13 103754556 103754736 -15990162 + L1ME3A LINE L1 5649 5833 -337 2134 101 27 17 chr13 103754736 103755033 -15989865 + AluSc SINE Alu 1 300 -9 332 273 77 31 chr13 103755033 103755076 -15989822 + L1ME3A LINE L1 5833 5873 -297 768 192 0 0 chr13 103755248 103755373 -15989525 - FLAM_A SINE Alu -4 129 5 2128 112 10 13 chr13 103755381 103755684 -15989214 - AluSx SINE Alu -10 302 1 2303 110 3 0 chr13 103756123 103756432 -15988466 + AluSx SINE Alu 1 310 -2 1770 204 21 40 chr13 103756729 103757041 -15987857 + MLT1B LTR MaLR 7 313 -77 2156 103 0 0 chr13 103757041 103757345 -15987553 - AluSg SINE Alu 0 304 1 1770 204 21 40 chr13 103757345 103757409 -15987489 + MLT1B LTR MaLR 313 377 -13 189 0 0 0 chr13 103757607 103757628 -15987270 + (T)n Simple_repeat Simple_repeat 1 21 0 265 321 187 8 chr13 103757643 103757889 -15987009 + HAL1 LINE L1 1547 1836 -671 2099 119 16 16 chr13 103758417 103758728 -15986170 - AluSx SINE Alu -1 311 1 474 280 126 21 chr13 103758946 103759185 -15985713 - L1ME1 LINE L1 0 6166 5903 2234 204 98 21 chr13 103759390 103759950 -15984948 - L1ME1 LINE L1 -261 5905 5303 21 0 0 0 chr13 103759950 103759971 -15984927 + AT_rich Low_complexity Low_complexity 1 21 0 325 191 29 15 chr13 103759983 103760051 -15984847 + L1MD3 LINE L1 5869 5937 -2058 * 2979 184 53 184 chr13 103760028 103760202 -15984696 - L1ME1 LINE L1 -844 5302 5107 2094 138 7 0 chr13 103760202 103760499 -15984399 + AluJo SINE Alu 7 305 -7 2979 184 53 184 chr13 103760499 103761501 -15983397 - L1ME1 LINE L1 -1039 5107 3976 1012 171 0 6 chr13 103761501 103761659 -15983239 - AluJb SINE Alu -22 290 134 2166 124 0 13 chr13 103761659 103761966 -15982932 - AluSx SINE Alu -9 303 1 2979 184 53 184 chr13 103761966 103762407 -15982491 - L1ME1 LINE L1 -2168 3978 3757 1680 170 25 62 chr13 103762665 103762989 -15981909 + AluJb SINE Alu 1 312 0 472 206 135 24 chr13 103763008 103763134 -15981764 + FLAM_C SINE Alu 2 141 -2 351 198 10 20 chr13 103763156 103763257 -15981641 + GA-rich Low_complexity Low_complexity 2 101 0 1497 145 0 8 chr13 103763536 103763770 -15981128 - AluJo SINE Alu 0 312 81 24 0 0 0 chr13 103763932 103763956 -15980942 + AT_rich Low_complexity Low_complexity 1 24 0 2095 148 0 0 chr13 103764908 103765211 -15979687 + AluSx SINE Alu 1 303 -9 369 193 24 12 chr13 103765212 103765295 -15979603 + MER5B DNA MER1_type 93 176 -2 799 183 156 0 chr13 103765321 103765507 -15979391 - MER20 DNA MER1_type 0 219 5 233 191 48 16 chr13 103765515 103765578 -15979320 + MER5A DNA MER1_type 17 81 -108 2211 122 0 10 chr13 103765601 103765904 -15978994 + AluSx SINE Alu 1 300 -12 2137 135 33 30 chr13 103766440 103766802 -15978096 + THE1B LTR MaLR 1 363 -1 2480 152 27 31 chr13 103767185 103767618 -15977280 + L1MB2 LINE L1 5687 6119 -52 1744 129 75 20 chr13 103767618 103767913 -15976985 + AluJo SINE Alu 1 311 -1 2480 152 27 31 chr13 103767913 103767960 -15976938 + L1MB2 LINE L1 6119 6165 -6 480 75 15 0 chr13 103767988 103768055 -15976843 + MER41A LTR ERV1 399 466 -88 183 162 0 0 chr13 103768100 103768137 -15976761 + GA-rich Low_complexity Low_complexity 1 37 0 2220 120 0 3 chr13 103768959 103769260 -15975638 - AluSx SINE Alu -12 300 1 2008 142 26 3 chr13 103770525 103770828 -15974070 + AluSx SINE Alu 1 310 -2 228 35 0 0 chr13 103771653 103771682 -15973216 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1335 177 76 43 chr13 103772816 103773045 -15971853 - Charlie5 DNA MER1_type -1 2623 2376 1603 204 13 16 chr13 103773045 103773349 -15971549 - AluJb SINE Alu -9 303 1 1335 177 76 43 chr13 103773349 103773487 -15971411 - Charlie5 DNA MER1_type -248 2376 2244 2193 139 0 19 chr13 103773756 103774072 -15970826 + AluSx SINE Alu 1 310 -2 194 139 56 28 chr13 103774337 103774391 -15970507 + (CAATA)n Simple_repeat Simple_repeat 2 60 -15 2037 105 11 0 chr13 103774391 103774668 -15970230 + AluSx SINE Alu 26 305 -7 194 139 56 28 chr13 103774668 103774685 -15970213 + (CAATA)n Simple_repeat Simple_repeat 60 75 0 453 318 68 25 chr13 103774974 103775158 -15969740 - L1ME4a LINE L1 -263 5858 5656 2192 118 7 0 chr13 103775158 103775464 -15969434 - AluSx SINE Alu -4 308 1 453 318 68 25 chr13 103775464 103775559 -15969339 - L1ME4a LINE L1 -465 5656 5567 2255 121 0 0 chr13 103776331 103776636 -15968262 + AluSx SINE Alu 1 305 -7 773 178 0 0 chr13 103776894 103777012 -15967886 + FLAM_C SINE Alu 1 118 -15 27 0 0 0 chr13 103777017 103777044 -15967854 + AT_rich Low_complexity Low_complexity 1 27 0 600 76 0 0 chr13 103778057 103778136 -15966762 + MADE1 DNA Mariner 2 80 0 1161 171 0 0 chr13 103778299 103778480 -15966418 - AluJ SINE Alu 0 312 132 1891 131 29 0 chr13 103778526 103778800 -15966098 + AluSq SINE Alu 1 282 -31 651 168 0 70 chr13 103778801 103778944 -15965954 - AluJ SINE Alu -169 133 1 683 196 38 0 chr13 103779722 103779855 -15965043 - MER58B DNA MER1_type 0 341 204 45 0 0 0 chr13 103779939 103779984 -15964914 + AT_rich Low_complexity Low_complexity 1 45 0 442 170 21 0 chr13 103780234 103780328 -15964570 + LTR37A LTR ERV1 331 426 0 2252 104 0 7 chr13 103780760 103781068 -15963830 + AluY SINE Alu 1 306 -5 295 193 114 0 chr13 103782355 103782443 -15962455 + L1ME4a LINE L1 5968 6065 -56 760 206 201 10 chr13 103782879 103783088 -15961810 - MIR SINE MIR -3 259 11 268 231 51 0 chr13 103783081 103783159 -15961739 - MIR SINE MIR -63 145 64 * 2001 137 3 10 chr13 103784213 103784506 -15960392 + AluJo SINE Alu 1 291 -21 1745 81 0 9 chr13 103784542 103784764 -15960134 - AluY SINE Alu -91 220 1 2200 146 93 5 chr13 103784886 103785283 -15959615 + MSTB1 LTR MaLR 1 432 0 204 273 0 18 chr13 103785630 103785685 -15959213 - L2 LINE L2 -34 3279 3226 1615 161 69 17 chr13 103785708 103785999 -15958899 - AluJb SINE Alu -6 306 1 360 184 53 61 chr13 103786978 103787092 -15957806 - MER5B DNA MER1_type -62 116 4 769 228 27 5 chr13 103787902 103788086 -15956812 - MER5A DNA MER1_type 0 189 2 1477 155 67 0 chr13 103788106 103788390 -15956508 - L1 LINE L1 -1245 4901 4599 * 2198 113 14 82 chr13 103788384 103788690 -15956208 + L1MA4 LINE L1 5827 6098 -202 2333 110 10 0 chr13 103788690 103788998 -15955900 + AluSx SINE Alu 1 311 -1 2198 113 14 82 chr13 103788998 103789116 -15955782 + L1MA4 LINE L1 6098 6222 -78 23 33 0 0 chr13 103789120 103789150 -15955748 + AT_rich Low_complexity Low_complexity 1 30 0 298 208 26 0 chr13 103789185 103789262 -15955636 + L1MA2 LINE L1 6222 6300 -4 388 197 13 0 chr13 103789397 103789473 -15955425 - MER5A DNA MER1_type -110 79 3 1885 83 37 0 chr13 103789960 103790201 -15954697 + AluSx SINE Alu 47 296 -16 423 53 0 75 chr13 103790201 103790295 -15954603 + (GGGGA)n Simple_repeat Simple_repeat 3 89 0 395 306 127 12 chr13 103790903 103791155 -15953743 + LTR33 LTR ERVL 131 411 -110 1832 197 144 5 chr13 103792840 103793285 -15951613 + MLT1D LTR MaLR 1 505 0 320 280 59 34 chr13 103793672 103793790 -15951108 + MIR SINE MIR 16 136 -72 948 140 105 15 chr13 103793791 103793954 -15950944 + MSTB LTR MaLR 2 172 -254 2294 119 3 0 chr13 103793954 103794256 -15950642 - AluSx SINE Alu -9 303 1 948 140 105 15 chr13 103794256 103794288 -15950610 + MSTB LTR MaLR 172 200 -226 1571 173 33 26 chr13 103794305 103794611 -15950287 + L1P3 LINE L1 10 317 -6144 16353 57 0 3 chr13 103794611 103797496 -15947402 + L1PA6 LINE L1 3272 6151 -3 1266 133 80 0 chr13 103797501 103797726 -15947172 + MSTB LTR MaLR 184 426 0 9692 160 13 2 chr13 103797726 103799354 -15945544 + MSTA-int LTR MaLR 1 1646 -5 2542 142 51 5 chr13 103799357 103799766 -15945132 + MSTA LTR MaLR 1 428 0 1043 111 0 0 chr13 103801325 103801460 -15943438 + AluSq/x SINE Alu 4 138 -174 1941 124 44 0 chr13 103801462 103801736 -15943162 + AluSx SINE Alu 18 303 -9 507 229 53 20 chr13 103802015 103802264 -15942634 + REP3 LTR ERV 26 335 -227 1997 199 31 52 chr13 103802471 103802762 -15942136 - MLT1C LTR MaLR 0 467 188 1917 165 7 0 chr13 103802762 103803065 -15941833 - AluJo SINE Alu -7 305 1 1997 199 31 52 chr13 103803065 103803250 -15941648 - MLT1C LTR MaLR -279 188 1 1639 131 0 4 chr13 103804029 103804258 -15940640 + AluJb SINE Alu 81 308 -4 294 23 45 0 chr13 103804443 103804460 -15940438 - MADE1 DNA Mariner -34 46 31 2443 87 0 10 chr13 103804460 103804772 -15940126 + AluSg SINE Alu 1 309 -1 294 23 45 0 chr13 103804772 103804798 -15940100 - MADE1 DNA Mariner -49 31 1 1425 228 102 15 chr13 103805394 103805806 -15939092 + MLT1C LTR MaLR 20 467 0 3731 141 43 3 chr13 103805874 103806498 -15938400 - L1PA13 LINE L1 -7 6156 5508 2230 121 3 0 chr13 103807590 103807897 -15937001 + AluSx SINE Alu 1 308 -4 1776 180 6 13 chr13 103808275 103808586 -15936312 - AluJb SINE Alu -3 309 1 554 231 66 39 chr13 103808795 103808977 -15935921 + MER5A DNA MER1_type 3 189 0 1180 226 78 19 chr13 103809705 103810024 -15934874 + MER58B DNA MER1_type 4 341 0 2401 75 0 7 chr13 103810108 103810402 -15934496 - AluSc SINE Alu -17 292 1 2258 106 0 10 chr13 103810743 103811046 -15933852 - AluSx SINE Alu -12 300 1 639 240 7 0 chr13 103812843 103812993 -15931905 - MER5A DNA MER1_type -38 151 1 389 206 11 11 chr13 103813050 103813230 -15931668 + (TG)n Simple_repeat Simple_repeat 1 180 0 7120 66 0 2 chr13 103813309 103814979 -15929919 + L1PA6 LINE L1 4487 6154 0 1612 204 22 0 chr13 103815151 103815514 -15929384 - L1MB3 LINE L1 -57 6126 5756 793 146 15 0 chr13 103815970 103816100 -15928798 + MER5A DNA MER1_type 1 132 -57 292 275 33 50 chr13 103816147 103816267 -15928631 - L2 LINE L2 -2 3270 3153 2571 132 48 62 chr13 103816445 103817062 -15927836 + MER4B LTR ERV1 1 779 0 1037 235 77 34 chr13 103817112 103817491 -15927407 - MLT1C LTR MaLR -2 465 71 24 32 0 0 chr13 103818474 103818505 -15926393 + AT_rich Low_complexity Low_complexity 1 31 0 611 146 20 23 chr13 103818545 103818791 -15926107 + AluJ SINE Alu 1 306 -6 2287 112 0 55 chr13 103819096 103819426 -15925472 - AluSx SINE Alu 0 312 1 1318 182 33 55 chr13 103819514 103819843 -15925055 - MLT1D LTR MaLR -1 504 183 1913 154 149 69 chr13 103819848 103820029 -15924869 + LTR61 LTR ERV1 1 166 -429 2514 77 0 3 chr13 103820029 103820340 -15924558 + AluY SINE Alu 2 311 0 1913 154 149 69 chr13 103820340 103820709 -15924189 + LTR61 LTR ERV1 166 595 0 36586 176 19 24 chr13 103820709 103824329 -15920569 + HERV3 LTR ERV1 2 3573 -4853 3789 195 23 67 chr13 103824329 103825343 -15919555 + LTR5 LTR ERVK 1 969 0 36586 176 19 24 chr13 103825343 103828308 -15916590 + HERV3 LTR ERV1 3573 6552 -1874 2195 189 24 0 chr13 103828317 103828773 -15916125 + L1MB7 LINE L1 5675 6141 -43 1309 284 87 30 chr13 103828827 103829401 -15915497 - L1ME3A LINE L1 -45 6125 5519 1988 133 64 25 chr13 103829540 103829901 -15914997 - THE1C LTR MaLR 0 375 1 521 143 0 0 chr13 103832735 103832812 -15912086 - AluJb SINE Alu -34 278 202 185 176 0 0 chr13 103832817 103832851 -15912047 + L2 LINE L2 3280 3313 0 2306 101 19 0 chr13 103834386 103834693 -15910205 + AluSq SINE Alu 1 313 0 188 234 143 39 chr13 103835132 103835209 -15909689 + L3b LINE CR1 1401 1485 -98 226 268 191 45 chr13 103835381 103835538 -15909360 - MER5A DNA MER1_type 0 189 10 558 262 21 11 chr13 103835558 103835745 -15909153 - MER20 DNA MER1_type -3 216 28 2469 80 3 0 chr13 103836470 103836771 -15908127 + AluSg SINE Alu 1 302 -8 2012 151 3 3 chr13 103837073 103837371 -15907527 - AluJb SINE Alu -14 298 1 2309 100 3 3 chr13 103837442 103837741 -15907157 - AluSp SINE Alu -14 299 1 917 196 123 29 chr13 103837743 103838019 -15906879 - L1MC1 LINE L1 -6 6327 6026 1966 254 108 57 chr13 103838136 103838240 -15906658 + L1MC5 LINE L1 6491 6588 -1373 2223 83 0 24 chr13 103838240 103838565 -15906333 - AluSx SINE Alu 0 319 2 1966 254 108 57 chr13 103838565 103839324 -15905574 + L1MC5 LINE L1 6588 7436 -525 2163 102 10 7 chr13 103839324 103839618 -15905280 + AluSx SINE Alu 1 295 -17 1966 254 108 57 chr13 103839618 103839975 -15904923 + L1MC5 LINE L1 7436 7773 -188 347 228 52 51 chr13 103840049 103840087 -15904811 - L1MC4 LINE L1 -1338 6984 6948 315 0 0 0 chr13 103840087 103840122 -15904776 + (TG)n Simple_repeat Simple_repeat 2 36 0 347 228 52 51 chr13 103840122 103840189 -15904709 - L1MC4 LINE L1 -1374 6948 6883 2122 126 11 0 chr13 103840189 103840474 -15904424 - AluSx SINE Alu -24 288 1 347 228 52 51 chr13 103840474 103840512 -15904386 - L1MC4 LINE L1 -1439 6883 1974 364 232 122 0 chr13 103840690 103840772 -15904126 + MIR SINE MIR 3 94 -168 386 230 103 40 chr13 103840885 103841011 -15903887 - L2 LINE L2 -969 2345 2212 198 276 127 64 chr13 103841323 103841606 -15903292 - L2 LINE L2 -1082 2232 1932 387 327 13 26 chr13 103842992 103843148 -15901750 + L1ME4a LINE L1 5966 6119 -2 1803 172 17 65 chr13 103844206 103844608 -15900290 - MLT1B LTR MaLR 0 390 8 394 276 115 11 chr13 103846169 103846343 -15898555 - MIR SINE MIR 0 262 71 395 270 52 0 chr13 103846580 103846695 -15898203 + L1ME LINE L1 5562 5682 -439 1291 286 158 24 chr13 103846727 103847201 -15897697 + L2 LINE L2 1350 1759 -1555 1958 135 143 13 chr13 103847201 103847580 -15897318 + MSTA LTR MaLR 1 428 0 1291 286 158 24 chr13 103847580 103848425 -15896473 + L2 LINE L2 1759 2846 -468 3451 180 47 17 chr13 103848601 103848777 -15896121 - L1MB3 LINE L1 -17 6560 6391 2807 65 16 29 chr13 103848777 103849159 -15895739 + MER51B LTR ERV1 1 377 0 3451 180 47 17 chr13 103849159 103849937 -15894961 - L1MB3 LINE L1 -186 6391 23 1166 209 46 16 chr13 103849943 103850242 -15894656 - L1MC5 LINE L1 -444 7517 7249 615 99 0 0 chr13 103850321 103850412 -15894486 - AluJ/FRAM SINE Alu -1 311 221 226 221 63 32 chr13 103850526 103850621 -15894277 - L1MC4a LINE L1 -1297 6511 6414 1079 110 0 0 chr13 103850709 103850845 -15894053 + AluSq/x SINE Alu 1 136 -177 927 130 21 138 chr13 103851160 103851399 -15893499 + L1MA10 LINE L1 6069 6279 -55 2152 115 3 0 chr13 103851405 103851692 -15893206 - AluSx SINE Alu -24 288 1 458 162 0 0 chr13 103851717 103851791 -15893107 - L1MC4a LINE L1 -1992 5816 5743 959 128 67 6 chr13 103852011 103852191 -15892707 + L1MB3 LINE L1 5993 6183 0 2228 121 3 3 chr13 103855744 103856050 -15888848 - AluSx SINE Alu -6 306 1 243 125 0 0 chr13 103859319 103859359 -15885539 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 522 190 43 43 chr13 103859481 103859597 -15885301 - L1ME3A LINE L1 0 6170 6055 * 669 298 62 0 chr13 103859595 103859887 -15885011 + L1M4 LINE L1 4890 5199 -947 1864 137 17 33 chr13 103860993 103861293 -15883605 + AluJb SINE Alu 5 299 -13 29 47 0 0 chr13 103861429 103861472 -15883426 + AT_rich Low_complexity Low_complexity 1 43 0 240 217 217 42 chr13 103862221 103862341 -15882557 + L2 LINE L2 3173 3313 0 398 182 11 0 chr13 103862953 103863054 -15881844 - MIR SINE MIR -65 143 78 878 186 16 11 chr13 103863402 103863590 -15881308 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr13 103863718 103863742 -15881156 + AT_rich Low_complexity Low_complexity 1 24 0 226 294 0 0 chr13 103863943 103864011 -15880887 - L1MB8 LINE L1 0 6178 6111 181 255 0 0 chr13 103864461 103864508 -15880390 + L3 LINE CR1 1424 1470 -107 730 256 96 86 chr13 103865305 103865756 -15879142 - L1MC4 LINE L1 -41 8001 7543 2064 87 8 0 chr13 103865756 103866021 -15878877 - AluSp SINE Alu -16 297 31 730 256 96 86 chr13 103866021 103866068 -15878830 - L1MC4 LINE L1 -499 7543 7498 2304 101 0 0 chr13 103866618 103866915 -15877983 + AluSx SINE Alu 1 297 -15 224 293 0 0 chr13 103867240 103867298 -15877600 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 214 128 21 21 chr13 103869123 103869170 -15875728 + GA-rich Low_complexity Low_complexity 3 49 0 224 30 30 0 chr13 103869269 103869302 -15875596 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 362 309 69 44 chr13 103870811 103871015 -15873883 + MLT1K LTR MaLR 111 319 -269 662 208 83 10 chr13 103871220 103871412 -15873486 - L1M4 LINE L1 -743 5403 5198 413 131 0 81 chr13 103871416 103871515 -15873383 - AluY SINE Alu -2 309 219 1064 150 23 6 chr13 103871515 103871688 -15873210 - AluSx SINE Alu -125 187 12 1884 206 47 2 chr13 103871689 103872116 -15872782 - L1M4 LINE L1 -932 5214 4769 198 0 0 0 chr13 103872119 103872141 -15872757 + (T)n Simple_repeat Simple_repeat 1 22 0 2004 231 72 18 chr13 103873049 103873616 -15871282 - L1M4 LINE L1 -1804 4342 3745 2447 83 0 16 chr13 103873619 103873932 -15870966 - AluSp SINE Alu -5 308 1 2105 101 0 4 chr13 103874398 103874665 -15870233 - AluSx SINE Alu -14 298 33 1549 176 19 8 chr13 103874665 103874989 -15869909 + AluJo SINE Alu 18 344 0 2305 75 0 4 chr13 103875458 103875772 -15869126 - AluY SINE Alu 0 313 1 283 254 45 0 chr13 103876047 103876114 -15868784 - L2 LINE L2 -2 3311 3242 180 0 0 0 chr13 103877229 103877249 -15867649 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1078 114 119 11 chr13 103877261 103877437 -15867461 + MSTA LTR MaLR 234 428 0 856 148 0 15 chr13 103877449 103877584 -15867314 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr13 103877766 103877787 -15867111 + (A)n Simple_repeat Simple_repeat 1 21 0 37 23 0 0 chr13 103878591 103878635 -15866263 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr13 103878823 103878843 -15866055 + (TG)n Simple_repeat Simple_repeat 1 20 0 297 328 40 23 chr13 103879076 103879250 -15865648 + MER5A DNA MER1_type 7 183 -6 2386 208 108 16 chr13 103880003 103880394 -15864504 + MER82 DNA MER2_type 1 461 -192 3284 142 65 4 chr13 103880394 103880916 -15863982 - MER41C LTR ERV1 0 554 1 2386 208 108 16 chr13 103880916 103881087 -15863811 + MER82 DNA MER2_type 461 615 -38 357 276 85 25 chr13 103881102 103881301 -15863597 + LTR33 LTR ERVL 10 220 -301 574 263 67 11 chr13 103881362 103881541 -15863357 + LTR33 LTR ERVL 328 516 -5 243 0 0 0 chr13 103882660 103882687 -15862211 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1097 223 87 31 chr13 103882905 103883296 -15861602 - Charlie1 DNA MER1_type 0 2761 2349 21 57 0 0 chr13 103887333 103887368 -15857530 + AT_rich Low_complexity Low_complexity 1 35 0 1641 203 121 5 chr13 103887878 103888292 -15856606 + MLT1C LTR MaLR 6 467 0 362 277 2 8 chr13 103888673 103888798 -15856100 - MIR SINE MIR -37 171 50 325 267 190 27 chr13 103890206 103890464 -15854434 + L2 LINE L2 2405 2704 -610 230 169 42 56 chr13 103890719 103890790 -15854108 + L2 LINE L2 3179 3248 -65 201 129 0 0 chr13 103892331 103892362 -15852536 + MIR SINE MIR 114 144 -64 24 32 0 0 chr13 103893653 103893684 -15851214 + AT_rich Low_complexity Low_complexity 1 31 0 237 83 0 0 chr13 103894868 103894904 -15849994 + (CA)n Simple_repeat Simple_repeat 1 36 0 448 209 27 36 chr13 103894940 103895050 -15849848 + MIR SINE MIR 79 187 -75 2308 83 10 3 chr13 103895725 103896027 -15848871 - AluSc SINE Alu -5 304 1 588 202 8 1 chr13 103896420 103896551 -15848347 - MER5A DNA MER1_type -57 123 1 811 254 23 28 chr13 103897828 103898045 -15846853 - MIR SINE MIR -3 259 44 1106 204 34 13 chr13 103898124 103898359 -15846539 + MIR SINE MIR 2 241 -21 258 217 43 29 chr13 103901497 103901566 -15843332 - HsTC2 DNA Tc2 -1826 72 3 2260 108 10 13 chr13 103901608 103901786 -15843112 - AluSx SINE Alu -7 305 127 189 0 0 0 chr13 103901786 103901807 -15843091 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2260 108 10 13 chr13 103901807 103901934 -15842964 - AluSx SINE Alu -185 127 1 383 310 62 43 chr13 103902151 103902409 -15842489 - L3 LINE CR1 -8 1569 1307 205 220 0 20 chr13 103903341 103903391 -15841507 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2040 127 3 52 chr13 103904347 103904671 -15840227 - AluSx SINE Alu -4 308 1 21 0 0 0 chr13 103906420 103906441 -15838457 + AT_rich Low_complexity Low_complexity 1 21 0 835 233 95 41 chr13 103909247 103909564 -15835334 + MER46C DNA MER2_type 1 334 -4 661 292 104 17 chr13 103910505 103910793 -15834105 - L1MC4a LINE L1 -1896 5912 5600 510 254 59 64 chr13 103911065 103911285 -15833613 - MIR SINE MIR -17 245 27 189 186 93 0 chr13 103911620 103911663 -15833235 + L2 LINE L2 3225 3271 -1 356 263 26 67 chr13 103911733 103911927 -15832971 + L1M4 LINE L1 4959 5144 -1002 21 36 0 0 chr13 103912085 103912113 -15832785 + AT_rich Low_complexity Low_complexity 1 28 0 2297 105 0 0 chr13 103915283 103915587 -15829311 + AluSg SINE Alu 1 304 -6 2021 214 113 6 chr13 103916406 103916902 -15827996 + MER119 DNA MER1_type 32 580 -3 1508 98 0 10 chr13 103917379 103917582 -15827316 - AluSq SINE Alu -112 201 1 238 328 62 39 chr13 103918998 103919126 -15825772 - MIR SINE MIR -119 143 13 439 210 0 0 chr13 103919249 103919330 -15825568 - MIR SINE MIR -6 256 176 264 30 0 0 chr13 103919713 103919746 -15825152 + (TG)n Simple_repeat Simple_repeat 2 34 0 202 265 12 24 chr13 103920654 103920737 -15824161 + G-rich Low_complexity Low_complexity 3 84 0 220 303 61 20 chr13 103921884 103921983 -15822915 - MIR3 SINE MIR -49 159 57 1465 182 90 74 chr13 103922229 103922398 -15822500 + MLT1C LTR MaLR 6 171 -296 1956 144 3 7 chr13 103922398 103922696 -15822202 + AluSg SINE Alu 1 297 -13 1465 182 90 74 chr13 103922696 103922961 -15821937 + MLT1C LTR MaLR 171 447 -20 210 37 0 0 chr13 103923595 103923622 -15821276 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2898 108 31 17 chr13 103924697 103925048 -15819850 + MSTB LTR MaLR 5 364 -62 1542 181 3 54 chr13 103925048 103925362 -15819536 - AluJo SINE Alu -14 298 1 2898 108 31 17 chr13 103925362 103925426 -15819472 + MSTB LTR MaLR 364 426 0 346 279 218 39 chr13 103926023 103926335 -15818563 + L2 LINE L2 2946 3313 0 1640 176 36 0 chr13 103928473 103928751 -15816147 + AluJo SINE Alu 1 288 -24 384 267 26 97 chr13 103928880 103929075 -15815823 - MER5A DNA MER1_type -8 181 1 362 306 197 5 chr13 103929236 103929429 -15815469 - MIR SINE MIR -5 257 28 351 217 72 0 chr13 103929536 103929619 -15815279 - MIR SINE MIR -65 197 109 673 259 132 61 chr13 103929625 103930081 -15814817 + MLT1J LTR MaLR 7 494 -17 1339 247 40 53 chr13 103930567 103931217 -15813681 + L1MC5 LINE L1 7233 7784 -177 1871 162 13 10 chr13 103932388 103932697 -15812201 - AluJo SINE Alu -2 310 1 792 278 57 55 chr13 103932799 103933217 -15811681 + LTR16B LTR ERVL 11 429 -35 1093 251 147 23 chr13 103933398 103933828 -15811070 + MLT1J LTR MaLR 14 496 -15 428 246 17 0 chr13 103933993 103934010 -15810888 - L1MA10 LINE L1 0 6334 6318 1942 208 23 16 chr13 103934010 103934517 -15810381 - L1ME1 LINE L1 -9 6155 5618 2121 99 4 0 chr13 103936201 103936474 -15808424 + AluSq SINE Alu 1 274 -39 354 297 51 36 chr13 103937161 103937299 -15807599 + MIR3 SINE MIR 60 199 -9 383 363 121 14 chr13 103937545 103937834 -15807064 + L2 LINE L2 2949 3268 -4 1948 180 93 0 chr13 103937926 103938282 -15806616 + MLT1B LTR MaLR 2 390 0 381 191 0 22 chr13 103938315 103938404 -15806494 - L1MB3 LINE L1 -27 6156 6070 * 412 147 137 0 chr13 103938396 103938498 -15806400 - L1MA4 LINE L1 -289 6011 5896 938 233 33 25 chr13 103939577 103939822 -15805076 + MIR SINE MIR 6 252 -10 501 238 130 35 chr13 103942114 103942375 -15802523 + MLT1D LTR MaLR 1 286 -219 192 309 24 71 chr13 103942673 103942757 -15802141 + L2 LINE L2 3139 3218 -54 1814 168 7 0 chr13 103943208 103943537 -15801361 - AluJb SINE Alu 0 312 1 1402 135 14 19 chr13 103945313 103945528 -15799370 + AluJo SINE Alu 1 214 -98 333 150 150 71 chr13 103946246 103946373 -15798525 + L1ME4a LINE L1 5979 6115 -6 200 327 39 0 chr13 103947065 103947117 -15797781 + L2 LINE L2 3133 3186 -86 216 0 0 0 chr13 103947135 103947159 -15797739 + (T)n Simple_repeat Simple_repeat 1 24 0 526 261 104 46 chr13 103947195 103947326 -15797572 + MIR SINE MIR 7 129 -133 2560 65 0 0 chr13 103947326 103947633 -15797265 + AluY SINE Alu 1 307 -4 526 261 104 46 chr13 103947633 103947742 -15797156 + MIR SINE MIR 129 261 -1 193 254 45 60 chr13 103947843 103947910 -15796988 + L2 LINE L2 3204 3269 -3 967 201 110 27 chr13 103948767 103949066 -15795832 - MER33 DNA MER1_type 0 324 1 1760 50 0 0 chr13 103949169 103949391 -15795507 + L1PB1 LINE L1 5929 6150 -1 194 295 33 0 chr13 103949441 103949502 -15795396 + L2 LINE L2 3247 3309 -4 229 233 123 14 chr13 103949517 103949590 -15795308 - L3 LINE CR1 -61 1516 1436 1123 359 83 29 chr13 103949650 103950683 -15794215 - L3 LINE CR1 -341 1236 148 275 333 61 26 chr13 103952575 103952689 -15792209 - L2 LINE L2 -8 3264 3147 278 300 21 36 chr13 103952840 103952980 -15791918 - MIR SINE MIR -72 190 53 320 211 105 45 chr13 103954250 103954383 -15790515 - L1ME4a LINE L1 -2 6119 5979 427 253 103 57 chr13 103954740 103954818 -15790080 + L1ME4a LINE L1 5678 5751 -370 1802 99 6 119 chr13 103954818 103955161 -15789737 + AluSx SINE Alu 1 304 -8 427 253 103 57 chr13 103955161 103955363 -15789535 + L1ME4a LINE L1 5751 5971 -150 2345 98 0 0 chr13 103955376 103955671 -15789227 + AluSg SINE Alu 1 295 -15 231 179 0 15 chr13 103955715 103955782 -15789116 + L1ME4a LINE L1 6044 6109 -12 258 257 162 9 chr13 103956680 103956785 -15788113 + MIR SINE MIR 2 122 -140 946 194 99 0 chr13 103956786 103957028 -15787870 + MLT1C LTR MaLR 1 266 -201 24 0 0 0 chr13 103959040 103959064 -15785834 + AT_rich Low_complexity Low_complexity 1 24 0 325 143 159 0 chr13 103959140 103959203 -15785695 + MER5A DNA MER1_type 34 106 -83 331 318 56 16 chr13 103959311 103959437 -15785461 + MIR3 SINE MIR 72 202 -6 302 219 110 61 chr13 103960636 103960826 -15784072 - MIR SINE MIR -61 147 1 21 36 0 0 chr13 103960976 103961004 -15783894 + AT_rich Low_complexity Low_complexity 1 28 0 246 257 169 37 chr13 103961052 103961188 -15783710 + MIR3 SINE MIR 16 169 -39 25 51 0 0 chr13 103962923 103962962 -15781936 + AT_rich Low_complexity Low_complexity 1 39 0 2380 75 0 22 chr13 103963303 103963621 -15781277 + AluY SINE Alu 1 311 0 2239 151 47 5 chr13 103963723 103964148 -15780750 + L1MB3 LINE L1 5741 6183 0 369 297 193 35 chr13 103965231 103965521 -15779377 - L2 LINE L2 -4 3268 2933 886 78 8 0 chr13 103965641 103965770 -15779128 + MER41A LTR ERV1 337 466 -88 203 336 178 43 chr13 103965983 103966331 -15778567 - L2 LINE L2 -858 2456 2062 287 287 156 16 chr13 103966798 103966920 -15777978 + MIR3 SINE MIR 42 180 -28 552 279 113 10 chr13 103967893 103968097 -15776801 - MIR SINE MIR -29 233 9 302 263 18 2 chr13 103968114 103968273 -15776625 + L1P5 LINE L1 5325 5488 -683 * 519 304 52 36 chr13 103968269 103968634 -15776264 + L1MC4a LINE L1 5541 5911 -1897 25 51 0 0 chr13 103968836 103968875 -15776023 + AT_rich Low_complexity Low_complexity 1 39 0 813 92 69 0 chr13 103971312 103971442 -15773456 + L1MA4 LINE L1 6155 6293 -7 1129 138 0 12 chr13 103971604 103971764 -15773134 + AluSq SINE Alu 1 158 -155 2213 125 0 7 chr13 103971866 103972163 -15772735 - AluSx SINE Alu -17 295 1 445 175 39 0 chr13 103972190 103972293 -15772605 + L1ME3 LINE L1 5869 5975 -187 257 255 51 10 chr13 103972318 103972416 -15772482 + L1ME3 LINE L1 6059 6160 -2 249 232 14 0 chr13 103972549 103972618 -15772280 + (TA)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr13 103973477 103973498 -15771400 + AT_rich Low_complexity Low_complexity 1 21 0 256 243 0 14 chr13 103974489 103974559 -15770339 + MER5B DNA MER1_type 1 69 -109 530 215 44 30 chr13 103974661 103974796 -15770102 + MER5B DNA MER1_type 40 176 -2 399 275 28 56 chr13 103974978 103975120 -15769778 - MIR SINE MIR -113 149 12 339 273 146 42 chr13 103975619 103975879 -15769019 + L2 LINE L2 3026 3312 -1 560 215 12 2 chr13 103976157 103976327 -15768571 - MER20 DNA MER1_type 0 219 11 262 163 0 0 chr13 103976804 103976847 -15768051 + MIR SINE MIR 110 152 -110 186 43 0 0 chr13 103977626 103977649 -15767249 + (T)n Simple_repeat Simple_repeat 1 23 0 473 259 36 68 chr13 103977735 103978013 -15766885 + MER102b DNA MER1_type 72 340 -1 740 257 44 32 chr13 103978015 103978358 -15766540 + L1MEc LINE L1 38 384 -6012 1021 248 29 10 chr13 103978538 103978848 -15766050 + HAL1 LINE L1 1473 1788 -719 2175 93 32 0 chr13 103979102 103979382 -15765516 - AluSg SINE Alu -13 297 9 332 119 17 0 chr13 103979997 103980056 -15764842 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 923 240 39 2 chr13 103980313 103980557 -15764341 - MIR SINE MIR -5 257 2 246 213 0 0 chr13 103980683 103980730 -15764168 - MIR SINE MIR -155 107 61 324 268 116 22 chr13 103983769 103983907 -15760991 - MIR SINE MIR 0 262 112 1688 170 70 63 chr13 103984489 103984874 -15760024 + MSTB2 LTR MaLR 1 393 -64 2090 116 3 0 chr13 103984874 103985187 -15759711 + AluSx SINE Alu 1 314 0 1688 170 70 63 chr13 103985187 103985245 -15759653 + MSTB2 LTR MaLR 393 449 -8 204 225 0 0 chr13 103987014 103987054 -15757844 - MIR SINE MIR -21 241 202 2452 88 0 0 chr13 103987603 103987910 -15756988 - AluSg SINE Alu -3 307 1 192 40 0 0 chr13 103987996 103988021 -15756877 + (A)n Simple_repeat Simple_repeat 1 25 0 935 224 48 0 chr13 103988590 103988800 -15756098 - MER58A DNA MER1_type -4 220 1 32 0 0 0 chr13 103988930 103988962 -15755936 + AT_rich Low_complexity Low_complexity 1 32 0 2153 133 0 7 chr13 103989252 103989561 -15755337 + AluSx SINE Alu 1 307 -5 24 53 0 0 chr13 103989645 103989683 -15755215 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr13 103989929 103989968 -15754930 + AT_rich Low_complexity Low_complexity 1 39 0 681 71 48 79 chr13 103990600 103990644 -15754254 - L1MB3 LINE L1 -1 6182 6138 2408 69 3 0 chr13 103990644 103990935 -15753963 - AluSx SINE Alu -20 292 1 681 71 48 79 chr13 103990935 103991016 -15753882 - L1MB3 LINE L1 -45 6138 6061 373 187 0 66 chr13 103991028 103991119 -15753779 + L2 LINE L2 3225 3309 -4 2401 70 3 0 chr13 103991253 103991589 -15753309 - AluY SINE Alu 0 311 1 2131 121 0 7 chr13 103991592 103991889 -15753009 - AluSx SINE Alu -17 295 1 922 109 8 16 chr13 103991890 103992018 -15752880 - AluJb SINE Alu -185 127 1 2181 110 0 7 chr13 103992102 103992392 -15752506 + AluSx SINE Alu 1 288 -24 291 28 0 0 chr13 103992396 103992432 -15752466 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 499 255 184 73 chr13 103993749 103993857 -15751041 + MLT1H1 LTR MaLR 37 132 -423 1770 155 3 28 chr13 103993857 103994196 -15750702 - AluJb SINE Alu 0 332 1 499 255 184 73 chr13 103994196 103994553 -15750345 + MLT1H1 LTR MaLR 132 555 0 366 365 78 31 chr13 103994842 103995034 -15749864 - L2 LINE L2 0 3272 3072 180 0 0 0 chr13 103995270 103995290 -15749608 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2108 132 3 3 chr13 103995477 103995787 -15749111 + AluSx SINE Alu 1 310 -2 1795 155 0 0 chr13 103996363 103996641 -15748257 + AluJo SINE Alu 35 312 0 299 96 19 0 chr13 103997384 103997436 -15747462 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 335 289 15 0 chr13 103998259 103998352 -15746546 + MIR SINE MIR 19 113 -112 25 0 0 0 chr13 103998803 103998828 -15746070 + AT_rich Low_complexity Low_complexity 1 25 0 844 181 0 13 chr13 104000834 104000983 -15743915 - AluJb SINE Alu -13 299 153 245 336 95 15 chr13 104001251 104001525 -15743373 + L2 LINE L2 2622 2917 -397 2591 51 0 16 chr13 104002658 104002974 -15741924 - AluY SINE Alu 0 311 1 1878 173 55 0 chr13 104003076 104003406 -15741492 - MER7A DNA MER2_type 0 346 1 581 275 101 45 chr13 104006399 104006755 -15738143 - L2 LINE L2 -339 2975 2600 2360 87 13 3 chr13 104007943 104008242 -15736656 - AluSq SINE Alu -11 302 1 2998 153 13 4 chr13 104008982 104009512 -15735386 - L1MB3 LINE L1 -17 6166 5632 1090 167 0 0 chr13 104009524 104009698 -15735200 - AluJ SINE Alu -27 285 112 882 150 0 0 chr13 104010912 104011039 -15733859 - AluJ SINE Alu -185 127 1 2365 92 0 0 chr13 104012340 104012634 -15732264 - AluSq SINE Alu -19 294 1 2323 98 0 3 chr13 104012675 104012971 -15731927 - AluSg SINE Alu -15 295 1 315 0 0 0 chr13 104015300 104015335 -15729563 + (CA)n Simple_repeat Simple_repeat 2 36 0 1873 161 0 3 chr13 104015472 104015763 -15729135 + AluSx SINE Alu 1 290 -22 2125 128 3 7 chr13 104016902 104017206 -15727692 + AluSx SINE Alu 1 303 -9 1022 283 94 7 chr13 104017362 104017776 -15727122 + MLT1J2 LTR MaLR 1 450 0 23 54 0 0 chr13 104017996 104018033 -15726865 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr13 104018044 104018081 -15726817 + AT_rich Low_complexity Low_complexity 1 37 0 955 176 126 0 chr13 104018913 104019095 -15725803 - MER58A DNA MER1_type 0 224 20 296 133 29 95 chr13 104019103 104019208 -15725690 + LTR41 LTR ERVL 654 751 -22 580 258 31 13 chr13 104021080 104021239 -15723659 + MER5A DNA MER1_type 1 162 -27 314 307 139 7 chr13 104022224 104022361 -15722537 + MER69 DNA AcHobo 347 501 -2025 2078 212 98 4 chr13 104022363 104022873 -15722025 + MER69 DNA AcHobo 1966 2523 -3 195 42 0 0 chr13 104023074 104023098 -15721800 + (A)n Simple_repeat Simple_repeat 1 24 0 185 268 137 58 chr13 104024478 104024668 -15720230 - L2 LINE L2 -1 3271 3067 420 231 51 17 chr13 104024678 104024795 -15720103 + L2 LINE L2 3191 3311 -2 361 210 196 77 chr13 104024940 104025083 -15719815 - MER69A DNA AcHobo -13 164 5 232 274 32 0 chr13 104025918 104025980 -15718918 - MIR3 SINE MIR -34 174 111 251 145 36 145 chr13 104027277 104027311 -15717587 + L1MC5 LINE L1 7851 7887 -74 810 186 93 0 chr13 104027311 104027483 -15717415 + MER5A DNA MER1_type 1 188 -1 251 145 36 145 chr13 104027483 104027531 -15717367 + L1MC5 LINE L1 7887 7924 -37 250 297 22 87 chr13 104027544 104027682 -15717216 + MIR SINE MIR 57 185 -77 332 233 95 17 chr13 104027804 104027920 -15716978 - MIR SINE MIR -57 205 81 1157 193 52 61 chr13 104028505 104028775 -15716123 + MER33 DNA MER1_type 1 269 -2316 2028 132 3 0 chr13 104028775 104029062 -15715836 + AluSx SINE Alu 1 288 -24 1157 193 52 61 chr13 104029062 104029117 -15715781 + MER33 DNA MER1_type 269 323 -1 1734 171 10 20 chr13 104030432 104030730 -15714168 - AluJo SINE Alu -13 299 5 372 299 80 0 chr13 104031536 104031673 -15713225 - MIR3 SINE MIR -35 173 26 2394 81 0 3 chr13 104031862 104032159 -15712739 + AluY SINE Alu 1 296 -15 569 247 110 18 chr13 104032496 104032715 -15712183 + MIR SINE MIR 24 262 0 1896 151 7 3 chr13 104034038 104034329 -15710569 - AluJb SINE Alu -17 295 4 2358 104 7 0 chr13 104034904 104035213 -15709685 + AluSq SINE Alu 1 311 -2 312 315 91 57 chr13 104035445 104035536 -15709362 + L1ME4a LINE L1 5744 5830 -291 1955 120 73 0 chr13 104035536 104035811 -15709087 + AluSx SINE Alu 1 295 -17 312 315 91 57 chr13 104035811 104035903 -15708995 + L1ME4a LINE L1 5830 5917 -204 366 23 0 0 chr13 104035903 104035946 -15708952 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 315 91 57 chr13 104035946 104036113 -15708785 + L1ME4a LINE L1 5917 6107 -14 648 194 0 0 chr13 104039561 104039695 -15705203 + (CAG)n Simple_repeat Simple_repeat 2 135 0 23 33 0 0 chr13 104040248 104040278 -15704620 + AT_rich Low_complexity Low_complexity 1 30 0 830 176 13 0 chr13 104040572 104040725 -15704173 - AluJb SINE Alu -11 301 147 541 222 202 0 chr13 104040819 104041017 -15703881 - MIR SINE MIR -19 243 6 2088 160 0 0 chr13 104041598 104041904 -15702994 - AluJb SINE Alu -6 306 1 192 289 47 123 chr13 104042912 104043123 -15701775 + L2 LINE L2 2992 3186 -86 2294 99 0 0 chr13 104044171 104044464 -15700434 - AluSx SINE Alu -19 293 1 404 227 78 28 chr13 104045246 104045387 -15699511 + MIR3 SINE MIR 51 198 -10 500 241 73 56 chr13 104045830 104046062 -15698836 + L2 LINE L2 3074 3309 -4 234 282 84 61 chr13 104046323 104046454 -15698444 + L2 LINE L2 3137 3270 -2 312 120 0 0 chr13 104047596 104047646 -15697252 + (CCA)n Simple_repeat Simple_repeat 1 50 0 890 114 60 12 chr13 104047674 104047840 -15697058 + L1MA7 LINE L1 6112 6285 -6 44 20 0 0 chr13 104048484 104048535 -15696363 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr13 104048645 104048674 -15696224 + AT_rich Low_complexity Low_complexity 1 29 0 792 255 50 21 chr13 104048738 104048977 -15695921 + MER96B DNA MER1_type? 1 246 -171 263 273 52 0 chr13 104048999 104049076 -15695822 - MIR SINE MIR -118 144 64 426 151 0 0 chr13 104049856 104049929 -15694969 + (TAA)n Simple_repeat Simple_repeat 1 73 0 382 283 28 0 chr13 104049929 104050035 -15694863 - MER5A DNA MER1_type -52 137 29 2078 125 3 3 chr13 104051622 104051917 -15692981 - AluSg SINE Alu -15 295 1 1241 161 115 0 chr13 104051962 104052222 -15692676 + MER33 DNA MER1_type 1 290 -34 31 44 0 0 chr13 104052222 104052267 -15692631 + AT_rich Low_complexity Low_complexity 1 45 0 475 288 126 50 chr13 104052280 104052638 -15692260 + MLT1J2 LTR MaLR 14 398 -52 192 278 70 61 chr13 104052761 104052876 -15692022 + MER5A DNA MER1_type 2 117 -72 194 238 226 60 chr13 104052981 104053004 -15691894 - MER5A DNA MER1_type -88 101 83 2550 108 43 6 chr13 104053004 104053355 -15691543 + THE1B LTR MaLR 1 364 0 194 238 226 60 chr13 104053355 104053415 -15691483 - MER5A DNA MER1_type -106 83 4 * 260 370 49 20 chr13 104053415 104053614 -15691284 - L2 LINE L2 -256 3016 2812 1138 73 53 0 chr13 104054157 104054308 -15690590 + AluY SINE Alu 143 301 -10 34 24 0 0 chr13 104054616 104054657 -15690241 + AT_rich Low_complexity Low_complexity 1 41 0 1063 192 14 19 chr13 104054832 104055046 -15689852 + MER20 DNA MER1_type 2 214 -5 25 51 0 0 chr13 104055188 104055227 -15689671 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr13 104055404 104055434 -15689464 + AT_rich Low_complexity Low_complexity 1 30 0 2580 53 0 0 chr13 104056033 104056335 -15688563 - AluY SINE Alu -9 302 1 513 293 50 54 chr13 104056410 104056649 -15688249 - L2 LINE L2 -358 2956 2719 1653 80 54 27 chr13 104057119 104057343 -15687555 - MER30 DNA MER1_type 0 230 1 255 125 0 0 chr13 104059824 104059864 -15685034 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr13 104059864 104059884 -15685014 + (TC)n Simple_repeat Simple_repeat 2 21 0 565 288 6 6 chr13 104062301 104062464 -15682434 + MER69A DNA AcHobo 15 177 0 663 266 19 43 chr13 104063313 104063520 -15681378 + MIR SINE MIR 5 206 -56 200 167 0 0 chr13 104063565 104063595 -15681303 + G-rich Low_complexity Low_complexity 2 31 0 235 236 201 74 chr13 104063859 104064677 -15680221 + L2 LINE L2 2048 3001 -271 333 0 0 0 chr13 104065332 104065369 -15679529 + (CA)n Simple_repeat Simple_repeat 2 38 0 749 190 45 132 chr13 104066227 104066469 -15678429 - MER58A DNA MER1_type 0 224 4 759 286 130 18 chr13 104066732 104067131 -15677767 + L1ME4a LINE L1 5444 5887 -234 316 280 61 8 chr13 104067178 104067310 -15677588 + L1ME4a LINE L1 5961 6099 -22 1838 162 3 3 chr13 104067361 104067651 -15677247 + AluJb SINE Alu 5 294 -18 2235 120 0 0 chr13 104067655 104067954 -15676944 + AluSc SINE Alu 1 299 -10 32 0 0 0 chr13 104067954 104067986 -15676912 + AT_rich Low_complexity Low_complexity 1 32 0 535 258 108 60 chr13 104068441 104068733 -15676165 + L1ME4a LINE L1 5556 5833 -288 252 0 0 0 chr13 104068733 104068761 -15676137 + (TC)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr13 104068760 104068783 -15676115 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 535 258 108 60 chr13 104068761 104068783 -15676115 + L1ME4a LINE L1 5833 5852 -269 2421 81 0 3 chr13 104068783 104069081 -15675817 - AluSq SINE Alu -16 297 1 535 258 108 60 chr13 104069081 104069120 -15675778 + L1ME4a LINE L1 5852 5904 -217 1277 215 90 34 chr13 104069151 104069505 -15675393 - MLT1A2 LTR MaLR 0 374 1 2060 136 3 0 chr13 104071450 104071744 -15673154 - AluSx SINE Alu -17 295 1 24 77 0 0 chr13 104071781 104071833 -15673065 + AT_rich Low_complexity Low_complexity 1 52 0 846 221 62 54 chr13 104072138 104072361 -15672537 - MIR SINE MIR -1 261 34 1849 146 23 3 chr13 104072361 104072663 -15672235 - AluJb SINE Alu -4 308 1 846 221 62 54 chr13 104072663 104072697 -15672201 - MIR SINE MIR -228 34 2 368 291 113 64 chr13 104073556 104073654 -15671244 - L2 LINE L2 -19 3294 3202 1709 161 0 48 chr13 104073654 104073964 -15670934 - AluJo SINE Alu -17 295 1 368 291 113 64 chr13 104073964 104074474 -15670424 - L2 LINE L2 -111 3202 2625 24 32 0 0 chr13 104075475 104075506 -15669392 + AT_rich Low_complexity Low_complexity 1 31 0 742 155 96 43 chr13 104078175 104078187 -15666711 + L1MA9 LINE L1 6125 6135 -177 1726 94 31 0 chr13 104078187 104078410 -15666488 + MER30 DNA MER1_type 1 230 0 742 155 96 43 chr13 104078410 104078576 -15666322 + L1MA9 LINE L1 6135 6311 -1 1650 186 108 43 chr13 104078686 104079058 -15665840 + MSTD LTR MaLR 1 396 0 1308 222 27 14 chr13 104079555 104079848 -15665050 + L1MB7 LINE L1 5771 6067 -117 1448 188 85 28 chr13 104079971 104080323 -15664575 + LTR52 LTR ERVL 47 418 -3 2167 121 0 3 chr13 104080366 104080664 -15664234 + AluSx SINE Alu 1 297 -15 227 300 0 0 chr13 104081675 104081725 -15663173 + L2 LINE L2 3210 3259 -13 2607 57 0 0 chr13 104081905 104082206 -15662692 + AluY SINE Alu 1 301 -10 1485 83 46 1 chr13 104082305 104082532 -15662366 + L1PA8 LINE L1 5900 6168 -4 1500 182 0 21 chr13 104083222 104083502 -15661396 + AluJo SINE Alu 15 288 -24 3522 164 17 38 chr13 104083554 104084214 -15660684 + L1MB3 LINE L1 5536 6181 -2 763 110 0 46 chr13 104085781 104085890 -15659008 + U6 snRNA snRNA 1 104 -3 2640 163 40 161 chr13 104085890 104086572 -15658326 + L1MB7 LINE L1 5290 5949 -235 652 13 0 0 chr13 104086572 104086647 -15658251 + AluYb8 SINE Alu 237 311 -7 2640 163 40 161 chr13 104086647 104086858 -15658040 + L1MB7 LINE L1 5949 6184 0 2025 118 4 4 chr13 104087559 104087865 -15657033 - AluSg SINE Alu 0 306 1 932 298 125 11 chr13 104088398 104088973 -15655925 + MERVL LTR ERVL 4532 5230 -534 1160 180 161 16 chr13 104089462 104090042 -15654856 + LTR50 LTR ERVL 4 789 -6 3457 162 129 13 chr13 104090087 104090785 -15654113 + L1MB7 LINE L1 5352 6130 -54 372 255 153 2 chr13 104091851 104091981 -15652917 - MIR SINE MIR -57 151 3 1975 126 0 39 chr13 104092736 104093045 -15651853 + AluSx SINE Alu 1 297 -15 34 89 0 0 chr13 104093147 104093237 -15651661 + AT_rich Low_complexity Low_complexity 1 90 0 243 333 29 10 chr13 104093882 104093984 -15650914 + L3 LINE CR1 1368 1471 -106 275 309 63 40 chr13 104094226 104094352 -15650546 - MIR3 SINE MIR -70 138 10 453 306 122 5 chr13 104094975 104095197 -15649701 + MIR SINE MIR 1 248 -14 506 285 54 58 chr13 104095866 104096260 -15648638 + MLT1J LTR MaLR 24 468 -43 1851 153 20 91 chr13 104096284 104096752 -15648146 + MLT2D LTR ERVL 1 397 0 1421 177 25 60 chr13 104096756 104097086 -15647812 + MLT1A1 LTR MaLR 12 329 -36 2282 100 7 0 chr13 104097086 104097385 -15647513 - AluSc SINE Alu -8 301 1 1421 177 25 60 chr13 104097385 104097421 -15647477 + MLT1A1 LTR MaLR 329 365 0 420 276 86 0 chr13 104097459 104097575 -15647323 - L2 LINE L2 -1 3312 3187 530 147 21 0 chr13 104097612 104097707 -15647191 + L1MB3 LINE L1 6085 6181 -2 2894 227 76 17 chr13 104097765 104098659 -15646239 + L1ME1 LINE L1 5227 6161 -5 736 198 19 0 chr13 104098511 104098668 -15646230 + L1MA10 LINE L1 6170 6329 -5 2480 89 0 3 chr13 104098839 104099153 -15645745 - AluSq SINE Alu 0 313 1 22 56 0 0 chr13 104100053 104100089 -15644809 + AT_rich Low_complexity Low_complexity 1 36 0 570 244 7 22 chr13 104100376 104100511 -15644387 + MIR SINE MIR 33 165 -97 1347 187 102 44 chr13 104100551 104100894 -15644004 + MLT1A1 LTR MaLR 3 365 0 25 0 0 0 chr13 104101035 104101060 -15643838 + AT_rich Low_complexity Low_complexity 1 25 0 198 196 0 43 chr13 104101170 104101216 -15643682 - L2 LINE L2 -6 3307 3264 1875 163 10 0 chr13 104101749 104102043 -15642855 + AluJo SINE Alu 1 297 -15 1175 248 89 27 chr13 104102167 104102606 -15642292 + MLT1C LTR MaLR 1 466 -1 182 258 76 0 chr13 104103064 104103130 -15641768 - L2 LINE L2 -929 2385 2315 1386 183 93 27 chr13 104103289 104103772 -15641126 + LTR55 LTR ERV 2 546 -2 262 213 33 0 chr13 104104473 104104534 -15640364 + L2 LINE L2 3210 3272 0 271 304 25 0 chr13 104104863 104104942 -15639956 + L2 LINE L2 3187 3267 -5 3816 135 100 10 chr13 104105565 104106277 -15638621 + L1MA8 LINE L1 5504 6279 -12 230 0 33 0 chr13 104106326 104106356 -15638542 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2347 85 0 30 chr13 104106358 104106663 -15638235 + AluY SINE Alu 1 296 -15 2183 115 0 13 chr13 104108065 104108370 -15636528 - AluSx SINE Alu -11 301 1 225 0 0 0 chr13 104108739 104108764 -15636134 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 247 312 61 44 chr13 104108994 104109289 -15635609 - HAL1 LINE L1 -7 2500 2201 293 171 26 6 chr13 104109918 104109991 -15634907 + AluY SINE Alu 134 172 -129 210 71 0 0 chr13 104109991 104110019 -15634879 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1802 164 10 10 chr13 104110073 104110365 -15634533 - AluJb SINE Alu -20 292 1 2092 107 17 3 chr13 104110960 104111259 -15633639 + AluSg SINE Alu 1 303 -7 198 0 0 0 chr13 104112403 104112425 -15632473 + (A)n Simple_repeat Simple_repeat 1 22 0 914 76 31 0 chr13 104113010 104113154 -15631744 - L1P5 LINE L1 -699 5457 5302 1154 151 0 44 chr13 104113161 104113366 -15631532 - AluJo SINE Alu -30 282 87 736 152 65 0 chr13 104113366 104113504 -15631394 - L1 LINE L1 -815 5331 5185 235 170 19 0 chr13 104113998 104114051 -15630847 + (TTTAA)n Simple_repeat Simple_repeat 4 57 0 363 163 93 23 chr13 104115686 104115772 -15629126 + L1MC4 LINE L1 7950 8041 -1 314 191 44 0 chr13 104117744 104117812 -15627086 + MLT1K LTR MaLR 518 588 0 2224 112 10 0 chr13 104118714 104119009 -15625889 - AluSx SINE Alu -14 298 1 280 260 27 0 chr13 104119711 104119784 -15625114 - MER5A DNA MER1_type -76 113 39 3180 140 88 40 chr13 104120202 104120610 -15624288 - L1MB7 LINE L1 0 6184 5730 2556 64 0 13 chr13 104120610 104120924 -15623974 - AluY SINE Alu -1 310 1 3180 140 88 40 chr13 104120924 104121171 -15623727 - L1MB7 LINE L1 -454 5730 5497 477 307 8 0 chr13 104121352 104121479 -15623419 + L2 LINE L2 3145 3272 0 226 212 0 61 chr13 104122332 104122398 -15622500 + L1ME4a LINE L1 6060 6121 0 1946 173 0 0 chr13 104122408 104122715 -15622183 - AluJo SINE Alu -1 311 5 688 212 97 90 chr13 104124153 104124474 -15620424 - MER5C DNA MER1_type 0 324 2 216 264 25 32 chr13 104126102 104126202 -15618696 + L2 LINE L2 2888 2984 -329 258 279 62 78 chr13 104126321 104126450 -15618448 + L2 LINE L2 3129 3255 -17 26 50 0 0 chr13 104127063 104127103 -15617795 + AT_rich Low_complexity Low_complexity 1 40 0 2018 109 17 7 chr13 104128849 104129151 -15615747 + AluSx SINE Alu 1 305 -7 290 310 90 21 chr13 104130098 104130243 -15614655 + MIR3 SINE MIR 30 184 -24 217 286 24 48 chr13 104130438 104130522 -15614376 + MIR SINE MIR 78 159 -103 461 259 28 42 chr13 104131097 104131240 -15613658 - MIR SINE MIR -3 259 119 7646 127 45 15 chr13 104131529 104131694 -15613204 - Tigger2 DNA MER2_type 0 2718 2560 1603 180 24 0 chr13 104131694 104131983 -15612915 - AluJb SINE Alu -16 296 1 7646 127 45 15 chr13 104131983 104133047 -15611851 - Tigger2 DNA MER2_type -158 2560 1451 3138 118 23 45 chr13 104133047 104133266 -15611632 + LTR35 LTR ERV1 1 223 -395 1721 172 31 3 chr13 104133266 104133557 -15611341 + AluJb SINE Alu 1 299 -13 3138 118 23 45 chr13 104133557 104133864 -15611034 + LTR35 LTR ERV1 223 515 -103 293 116 58 0 chr13 104133864 104133933 -15610965 + CT-rich Low_complexity Low_complexity 1 73 0 623 172 82 16 chr13 104133936 104134058 -15610840 + LTR35 LTR ERV1 489 618 0 6255 115 25 8 chr13 104134059 104134992 -15609906 - Tigger2 DNA MER2_type -1265 1453 506 2381 118 71 15 chr13 104134992 104135400 -15609498 + LTR23 LTR ERV1 2 432 -5 2948 134 49 12 chr13 104135404 104135897 -15609001 - Tigger2 DNA MER2_type -2207 511 1 1725 143 16 42 chr13 104135903 104136210 -15608688 - AluJo SINE Alu -11 301 3 249 173 19 0 chr13 104137294 104137346 -15607552 - L2 LINE L2 -1 3271 3219 180 0 0 0 chr13 104137403 104137423 -15607475 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2096 119 191 8 chr13 104137783 104138145 -15606753 + MSTA LTR MaLR 1 428 0 680 235 47 11 chr13 104138199 104138463 -15606435 + MLT1I LTR MaLR 1 366 -43 452 164 73 0 chr13 104139386 104139496 -15605402 - L1ME4a LINE L1 -14 6107 5990 188 330 58 0 chr13 104139853 104139956 -15604942 + MIR SINE MIR 9 117 -145 388 286 66 38 chr13 104140048 104140261 -15604637 - MIR SINE MIR -10 252 34 2301 111 0 0 chr13 104140305 104140602 -15604296 + AluSx SINE Alu 1 297 -15 1505 173 75 7 chr13 104142502 104142780 -15602118 + AluJo SINE Alu 1 297 -15 2264 96 0 3 chr13 104142783 104143074 -15601824 + AluSq SINE Alu 1 290 -23 309 26 0 0 chr13 104143081 104143119 -15601779 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 188 327 39 10 chr13 104143151 104143255 -15601643 - MIR3 SINE MIR -31 177 71 604 297 11 0 chr13 104143257 104143458 -15601440 - MIR SINE MIR -30 232 30 2269 117 0 0 chr13 104143522 104143820 -15601078 + AluSx SINE Alu 3 300 -12 463 243 72 43 chr13 104143952 104144187 -15600711 + L1MC5 LINE L1 7670 7911 -50 200 186 0 68 chr13 104146371 104146430 -15598468 + G-rich Low_complexity Low_complexity 5 59 0 21 0 0 0 chr13 104146696 104146717 -15598181 + GC_rich Low_complexity Low_complexity 1 21 0 306 234 13 32 chr13 104146903 104147061 -15597837 + (CCG)n Simple_repeat Simple_repeat 2 156 0 255 196 29 65 chr13 104147231 104147369 -15597529 + (CGGGG)n Simple_repeat Simple_repeat 3 135 0 324 0 0 0 chr13 104149240 104149276 -15595622 + (TG)n Simple_repeat Simple_repeat 2 37 0 1939 154 114 13 chr13 104149277 104149725 -15595173 - LTR54B LTR ERV1 -3 495 3 1636 213 67 33 chr13 104150067 104150222 -15594676 + MLT1C LTR MaLR 1 149 -318 270 0 0 0 chr13 104150222 104150252 -15594646 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1582 106 126 24 chr13 104150253 104150507 -15594391 - AluSx SINE Alu -32 280 1 1636 213 67 33 chr13 104150507 104150799 -15594099 + MLT1C LTR MaLR 148 465 -2 1804 174 0 3 chr13 104151425 104151729 -15593169 - AluJo SINE Alu -9 303 1 500 96 96 0 chr13 104151776 104151849 -15593049 + MADE1 DNA Mariner 1 80 0 226 225 9 126 chr13 104152185 104152296 -15592602 - MER5A DNA MER1_type -83 106 9 524 230 55 49 chr13 104152376 104153241 -15591657 + L1MD3 LINE L1 5313 6142 -1666 2379 87 3 0 chr13 104153241 104153540 -15591358 + AluSx SINE Alu 1 300 -12 524 230 55 49 chr13 104153540 104154008 -15590890 + L1MD3 LINE L1 6142 6606 -1202 2180 105 3 7 chr13 104154064 104154360 -15590538 + AluY SINE Alu 1 295 -16 656 183 9 0 chr13 104154409 104154524 -15590374 - MER63 DNA MER1_type -320 742 1 949 264 19 0 chr13 104154524 104154736 -15590162 + L1MC4 LINE L1 6671 6886 -1156 799 305 81 40 chr13 104155138 104155558 -15589340 + LTR16A LTR ERVL 14 450 0 301 253 56 94 chr13 104155679 104155805 -15589093 + L1MEc LINE L1 1384 1513 -994 2362 97 6 3 chr13 104155805 104156116 -15588782 + AluSx SINE Alu 1 312 0 301 253 56 94 chr13 104156116 104156239 -15588659 + L1MEc LINE L1 1513 1644 -863 259 279 36 9 chr13 104156296 104156407 -15588491 + L1MEc LINE L1 3400 3513 -2633 2318 194 16 4 chr13 104156410 104156901 -15587997 + L1MEc LINE L1 4215 4711 -1435 737 181 22 29 chr13 104156901 104157039 -15587859 + AluJo SINE Alu 2 138 -174 2469 63 3 19 chr13 104157039 104157354 -15587544 + AluY SINE Alu 2 311 0 1408 164 0 22 chr13 104157371 104157602 -15587296 + AluJb SINE Alu 1 226 -86 1763 183 69 46 chr13 104157608 104157850 -15587048 + L1MEc LINE L1 4709 4944 -1202 1841 172 7 7 chr13 104157850 104158153 -15586745 + AluJo SINE Alu 1 303 -9 1763 183 69 46 chr13 104158153 104158391 -15586507 + L1MEc LINE L1 4944 5200 -946 2439 98 0 3 chr13 104158392 104158699 -15586199 + AluSx SINE Alu 1 306 -6 1356 209 26 0 chr13 104158702 104158970 -15585928 + L1MB7 LINE L1 5780 6054 -130 2423 98 0 0 chr13 104159091 104159111 -15585787 - AluSx SINE Alu -6 306 287 213 65 0 0 chr13 104159111 104159142 -15585756 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2423 98 0 0 chr13 104159142 104159427 -15585471 - AluSx SINE Alu -24 288 1 870 211 300 18 chr13 104159760 104160168 -15584730 - MLT2B1 LTR ERVL 0 520 1 2099 134 0 0 chr13 104160169 104160459 -15584439 + AluSx SINE Alu 1 290 -22 21 0 0 0 chr13 104160696 104160717 -15584181 + AT_rich Low_complexity Low_complexity 1 21 0 1559 158 28 14 chr13 104160779 104161070 -15583828 + L1MB3 LINE L1 5887 6181 -2 2565 51 0 22 chr13 104161081 104161392 -15583506 + AluY SINE Alu 1 304 -7 22 35 0 0 chr13 104161392 104161421 -15583477 + AT_rich Low_complexity Low_complexity 1 29 0 1604 242 86 17 chr13 104161523 104162115 -15582783 - MER69 DNA AcHobo -3 2523 1891 1296 183 106 29 chr13 104162117 104162352 -15582546 + AluJo SINE Alu 1 261 -51 2898 64 11 16 chr13 104162352 104162729 -15582169 - THE1C LTR MaLR 0 375 1 1296 183 106 29 chr13 104162729 104162766 -15582132 + AluJo SINE Alu 261 294 -18 1342 222 18 57 chr13 104162774 104162837 -15582061 - MER69 DNA AcHobo -626 1900 1836 1933 161 3 0 chr13 104162837 104163136 -15581762 - AluJo SINE Alu -12 300 1 1342 222 18 57 chr13 104163136 104163453 -15581445 - MER69 DNA AcHobo -690 1836 1538 1947 100 75 4 chr13 104163453 104163734 -15581164 + AluSx SINE Alu 1 301 -11 1342 222 18 57 chr13 104163734 104163807 -15581091 - MER69 DNA AcHobo -988 1538 1464 541 242 23 8 chr13 104163856 104163988 -15580910 - MER69 DNA AcHobo -2333 193 60 2753 86 31 9 chr13 104164884 104165430 -15579468 - MER51A LTR ERV1 0 634 1 185 241 203 13 chr13 104165536 104165615 -15579283 + MIR3 SINE MIR 110 203 -5 1445 208 31 0 chr13 104165879 104166172 -15578726 - MER58B DNA MER1_type 0 341 40 3774 208 40 9 chr13 104166172 104167016 -15577882 + L1MB7 LINE L1 4576 5472 -712 1414 163 104 31 chr13 104167016 104167305 -15577593 + AluJo SINE Alu 1 310 -2 3774 208 40 9 chr13 104167305 104167972 -15576926 + L1MB7 LINE L1 5472 6117 -67 259 268 0 41 chr13 104167977 104168074 -15576824 + L1M4 LINE L1 3029 3121 -3025 1286 177 150 0 chr13 104168078 104168338 -15576560 + AluJo SINE Alu 1 299 -3 951 153 11 5 chr13 104168338 104168716 -15576182 + GA-rich Low_complexity Low_complexity 1 380 0 2005 213 62 96 chr13 104168718 104168891 -15576007 + L1M4 LINE L1 2766 2943 -3203 2507 69 3 0 chr13 104168891 104169197 -15575701 + AluY SINE Alu 2 308 -3 2005 213 62 96 chr13 104169197 104169351 -15575547 + L1M4 LINE L1 2943 3101 -3045 1696 171 48 3 chr13 104169351 104169644 -15575254 + AluJb SINE Alu 1 306 -6 2005 213 62 96 chr13 104169644 104170005 -15574893 + L1M4 LINE L1 3101 3420 -2726 2140 114 0 11 chr13 104170005 104170321 -15574577 + AluSg SINE Alu 2 314 0 2005 213 62 96 chr13 104170321 104170546 -15574352 + L1M4 LINE L1 3420 3651 -2495 1647 175 3 39 chr13 104170583 104170891 -15574007 + AluJo SINE Alu 14 310 -2 855 284 32 18 chr13 104170994 104171272 -15573626 - HsTC2b DNA Tc2 -611 304 23 23 68 0 0 chr13 104171487 104171531 -15573367 + AT_rich Low_complexity Low_complexity 1 44 0 2421 96 0 0 chr13 104172143 104172446 -15572452 - AluSq SINE Alu -10 303 1 246 203 51 0 chr13 104172507 104172566 -15572332 + MER20B DNA MER1_type 70 131 -652 275 231 113 131 chr13 104172577 104172737 -15572161 + MER91A DNA MER1_type 6 162 -34 247 255 128 21 chr13 104172804 104172898 -15572000 + MER20B DNA MER1_type 126 229 -554 378 0 0 0 chr13 104172898 104172940 -15571958 + (A)n Simple_repeat Simple_repeat 1 42 0 335 164 0 0 chr13 104172977 104173032 -15571866 + MER20B DNA MER1_type 239 293 -490 3250 232 34 25 chr13 104173076 104174013 -15570885 - L1MD2 LINE L1 -236 6123 5177 1750 170 24 0 chr13 104174013 104174307 -15570591 + AluJo SINE Alu 2 302 -10 2509 49 0 0 chr13 104174337 104174625 -15570273 - AluY SINE Alu -22 289 2 403 91 61 0 chr13 104174650 104174716 -15570182 + Alu SINE Alu 240 309 -3 814 237 136 23 chr13 104174716 104174774 -15570124 - L1MD2 LINE L1 -961 5185 5135 2150 119 3 3 chr13 104174774 104175069 -15569829 + AluSx SINE Alu 1 295 -17 814 237 136 23 chr13 104175069 104175318 -15569580 - L1MD2 LINE L1 -1011 5135 4843 1571 99 51 123 chr13 104175420 104175752 -15569146 + L1PB3 LINE L1 5847 6154 0 7679 20 1 1 chr13 104176209 104177091 -15567807 + L1PA3 LINE L1 5274 6155 0 210 71 0 0 chr13 104177422 104177450 -15567448 + (A)n Simple_repeat Simple_repeat 1 28 0 722 238 43 24 chr13 104177638 104177848 -15567050 + MER20B DNA MER1_type 276 489 -294 2323 105 3 0 chr13 104177880 104178185 -15566713 - AluY SINE Alu -5 306 1 857 62 0 0 chr13 104178185 104178282 -15566616 - AluSq/x SINE Alu -178 135 39 1971 120 7 0 chr13 104178285 104178559 -15566339 - AluSx SINE Alu -20 292 17 30 69 0 0 chr13 104178573 104178631 -15566267 + AT_rich Low_complexity Low_complexity 1 58 0 436 191 48 20 chr13 104178644 104178791 -15566107 + MER20B DNA MER1_type 536 686 -97 471 236 73 0 chr13 104178882 104178992 -15565906 - MLT1H1 LTR MaLR -281 274 157 1974 189 93 30 chr13 104178992 104179453 -15565445 - LTR2B LTR ERV1 0 490 1 435 242 111 7 chr13 104180006 104180159 -15564739 - MER5B DNA MER1_type -4 174 6 1938 114 56 88 chr13 104180334 104180633 -15564265 + THE1B LTR MaLR 1 287 -77 2511 46 3 7 chr13 104180633 104180940 -15563958 - AluY SINE Alu -5 306 1 1938 114 56 88 chr13 104180940 104181016 -15563882 + THE1B LTR MaLR 287 364 0 1578 185 46 0 chr13 104183142 104183423 -15561475 - AluJo SINE Alu -18 294 1 1356 252 61 30 chr13 104184718 104185111 -15559787 + LTR16C LTR ERVL 62 466 -25 206 156 0 89 chr13 104185122 104185167 -15559731 + L2 LINE L2 3254 3294 -19 213 303 0 0 chr13 104185191 104185257 -15559641 + L3 LINE CR1 1488 1553 -24 2551 65 7 0 chr13 104186387 104186693 -15558205 + AluSc SINE Alu 1 308 -1 3600 84 58 11 chr13 104186711 104187247 -15557651 + L1PB2 LINE L1 5591 6151 0 958 94 71 0 chr13 104188079 104188206 -15556692 + AluSq/x SINE Alu 1 136 -176 1753 62 0 5 chr13 104188206 104188414 -15556484 + AluSg SINE Alu 1 207 -103 4109 168 15 25 chr13 104188414 104189179 -15555719 + L1MC1 LINE L1 4640 5381 -952 2033 107 7 37 chr13 104189179 104189477 -15555421 + AluSx SINE Alu 3 291 -21 4109 168 15 25 chr13 104189477 104190063 -15554835 + L1MC1 LINE L1 5381 5972 -361 2386 151 69 5 chr13 104190065 104190483 -15554415 - Tigger2 DNA MER2_type -1 2717 2273 362 194 15 0 chr13 104190473 104190540 -15554358 - Tigger2 DNA MER2_type -2649 69 2 * 1995 154 55 6 chr13 104190541 104190885 -15554013 + L1MC1 LINE L1 5972 6332 -1 2047 141 119 3 chr13 104191145 104191514 -15553384 - MLT2D LTR ERVL -2 412 1 2342 176 87 15 chr13 104191794 104192265 -15552633 + MLT1D LTR MaLR 1 505 0 2070 136 0 19 chr13 104192322 104192631 -15552267 + AluSx SINE Alu 1 303 -9 401 186 0 39 chr13 104193294 104193396 -15551502 - L1MDa LINE L1 -4997 1543 1446 562 202 107 116 chr13 104195343 104195576 -15549322 + MLT1E LTR MaLR 1 231 -362 2275 99 10 0 chr13 104195580 104195874 -15549024 + AluSx SINE Alu 1 297 -15 1066 162 0 22 chr13 104195876 104196061 -15548837 + AluJo/FRAM SINE Alu 131 311 -1 1046 235 51 65 chr13 104196066 104196419 -15548479 + MLT1E LTR MaLR 231 578 -15 937 119 0 15 chr13 104197711 104197845 -15547053 - FLAM_C SINE Alu -1 132 1 516 196 72 26 chr13 104197986 104198139 -15546759 + Charlie2 DNA MER1_type 164 323 -2539 * 1269 211 69 13 chr13 104198137 104198516 -15546382 + Charlie2 DNA MER1_type 1856 2255 -607 2555 53 0 0 chr13 104198516 104198819 -15546079 - AluY SINE Alu -8 303 1 1678 111 81 0 chr13 104198819 104199080 -15545818 - MER4B LTR ERV1 -328 282 1 2438 121 12 58 chr13 104199080 104199493 -15545405 - MER4B-int LTR ERV1 0 6758 6365 2080 83 52 3 chr13 104199557 104199845 -15545053 - AluSx SINE Alu -10 302 1 4489 136 28 36 chr13 104199849 104200605 -15544293 - MER4B-int LTR ERV1 -427 6331 5582 401 80 0 0 chr13 104200602 104200652 -15544246 - MER4B-int LTR ERV1 -2784 3974 3925 * 1161 128 0 0 chr13 104200804 104200960 -15543938 - AluSp SINE Alu -19 294 139 4608 134 71 49 chr13 104200960 104201959 -15542939 + MER11B LTR ERVK 1 997 -74 1022 127 0 0 chr13 104201988 104202130 -15542768 - AluSq/x SINE Alu -170 142 1 1414 176 9 14 chr13 104202131 104202436 -15542462 - L1ME2 LINE L1 -144 6022 5723 1534 241 83 31 chr13 104202440 104202483 -15542415 + Charlie2 DNA MER1_type 2252 2291 -571 2200 116 0 7 chr13 104202483 104202785 -15542113 + AluSq SINE Alu 1 300 -13 1534 241 83 31 chr13 104202785 104203322 -15541576 + Charlie2 DNA MER1_type 2291 2862 0 1061 223 125 22 chr13 104203354 104203785 -15541113 - MLT1G LTR MaLR 0 530 54 1352 217 97 43 chr13 104203785 104204228 -15540670 + MLT1C LTR MaLR 1 467 0 1061 223 125 22 chr13 104204228 104204289 -15540609 - MLT1G LTR MaLR -476 54 1 1923 160 3 10 chr13 104204448 104204760 -15540138 + AluJb SINE Alu 1 310 -2 2387 110 0 0 chr13 104205386 104205694 -15539204 - AluSg SINE Alu -2 308 1 212 325 65 8 chr13 104205878 104206001 -15538897 + L2 LINE L2 3160 3289 -24 2040 132 7 7 chr13 104206320 104206616 -15538282 + AluSx SINE Alu 1 296 -16 207 244 69 76 chr13 104206625 104206756 -15538142 - MIR SINE MIR -63 145 28 1419 207 46 21 chr13 104207143 104207515 -15537383 - MLT1C LTR MaLR -35 432 52 1281 120 104 33 chr13 104207553 104207794 -15537104 - MLT1B LTR MaLR -132 258 1 2233 122 3 0 chr13 104207920 104208216 -15536682 - AluSx SINE Alu -15 297 1 21 36 0 0 chr13 104208216 104208244 -15536654 + AT_rich Low_complexity Low_complexity 1 28 0 501 304 62 37 chr13 104208455 104208622 -15536276 + MIR SINE MIR 14 190 -72 1652 185 7 17 chr13 104208622 104208909 -15535989 - AluJo SINE Alu -26 286 3 501 304 62 37 chr13 104208909 104208984 -15535914 + MIR SINE MIR 190 262 0 1494 112 0 0 chr13 104209022 104209218 -15535680 - AluSg/x SINE Alu -30 280 85 2183 125 0 3 chr13 104209361 104209664 -15535234 - AluSx SINE Alu -10 302 1 783 277 131 45 chr13 104209774 104210399 -15534499 - L1MC4a LINE L1 -1754 6054 5355 2278 114 0 0 chr13 104210399 104210706 -15534192 + AluSx SINE Alu 1 307 -5 783 277 131 45 chr13 104210706 104210812 -15534086 - L1MC4a LINE L1 -2453 5355 5260 387 310 11 69 chr13 104210940 104211214 -15533684 - L2 LINE L2 -681 2633 2376 603 0 0 0 chr13 104212044 104212111 -15532787 + (TATTG)n Simple_repeat Simple_repeat 1 67 0 709 203 0 0 chr13 104212124 104212247 -15532651 - FLAM_C SINE Alu -19 124 2 24 32 0 0 chr13 104212982 104213013 -15531885 + AT_rich Low_complexity Low_complexity 1 31 0 660 248 91 80 chr13 104213212 104213587 -15531311 + MLT1F LTR MaLR 91 469 -73 2103 113 0 0 chr13 104214363 104214638 -15530260 + AluSx SINE Alu 1 275 -37 247 25 50 0 chr13 104214644 104214684 -15530214 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1984 138 40 0 chr13 104214904 104215200 -15529698 + AluSx SINE Alu 1 308 -4 1165 224 35 0 chr13 104215241 104215495 -15529403 + AluJo SINE Alu 34 296 -16 2454 83 0 3 chr13 104215525 104215837 -15529061 + AluY SINE Alu 1 311 0 2325 104 0 0 chr13 104215853 104216152 -15528746 + AluY SINE Alu 1 299 -12 613 331 30 15 chr13 104216152 104216421 -15528477 - LTR16A LTR ERVL -118 332 60 294 203 156 0 chr13 104216450 104216553 -15528345 + MLT1I LTR MaLR 325 409 0 5454 149 28 39 chr13 104216684 104216919 -15527979 - L1MA8 LINE L1 -1 6290 6054 1626 167 41 31 chr13 104216919 104217212 -15527686 + AluJo SINE Alu 1 296 -16 5454 149 28 39 chr13 104217212 104217409 -15527489 - L1MA8 LINE L1 -237 6054 5856 3427 156 0 6 chr13 104217409 104217935 -15526963 - MER1A DNA MER1_type 0 527 5 5454 149 28 39 chr13 104217935 104218054 -15526844 - L1MA8 LINE L1 -435 5856 5737 338 0 24 0 chr13 104218054 104218096 -15526802 + (TG)n Simple_repeat Simple_repeat 2 44 0 1722 160 7 7 chr13 104218102 104218384 -15526514 - AluJo SINE Alu -30 282 1 5454 149 28 39 chr13 104218384 104218829 -15526069 - L1MA8 LINE L1 -559 5732 5292 2289 90 30 0 chr13 104218829 104219129 -15525769 - AluSx SINE Alu -3 309 1 5454 149 28 39 chr13 104219129 104219451 -15525447 - L1MA8 LINE L1 -999 5292 4968 543 300 88 9 chr13 104220698 104221018 -15523880 - L2 LINE L2 -2 3311 2967 327 306 53 60 chr13 104221016 104221297 -15523601 - L2 LINE L2 -1047 2267 1989 * 236 291 88 28 chr13 104221377 104221559 -15523339 + L1M4 LINE L1 4996 5188 -958 1654 189 39 19 chr13 104221564 104221727 -15523171 + 7SLRNA srpRNA srpRNA 6 179 -141 2749 99 6 0 chr13 104221727 104222089 -15522809 - THE1B LTR MaLR 0 364 1 1654 189 39 19 chr13 104222089 104222232 -15522666 + 7SLRNA srpRNA srpRNA 179 318 -2 1519 158 118 7 chr13 104222260 104222532 -15522366 + AluJo SINE Alu 1 302 0 1426 148 126 36 chr13 104223706 104223984 -15520914 + AluJo SINE Alu 1 303 -9 2626 50 3 0 chr13 104223986 104224288 -15520610 + AluY SINE Alu 1 303 -8 2229 144 20 26 chr13 104224333 104224370 -15520528 + MLT1B LTR MaLR 3 39 -351 1939 134 20 7 chr13 104224370 104224662 -15520236 + AluJo SINE Alu 2 297 -15 2229 144 20 26 chr13 104224662 104225014 -15519884 + MLT1B LTR MaLR 39 390 0 313 256 105 0 chr13 104225123 104225209 -15519689 - MER58 DNA MER1_type -1 2419 2325 2702 125 27 57 chr13 104225241 104225394 -15519504 + L1MB4 LINE L1 5684 5840 -340 2057 144 0 3 chr13 104225394 104225693 -15519205 + AluSx SINE Alu 2 299 -13 2702 125 27 57 chr13 104225693 104226051 -15518847 + L1MB4 LINE L1 5840 6180 0 1770 111 0 0 chr13 104226094 104226320 -15518578 + AluSx SINE Alu 40 265 -47 8272 57 19 1 chr13 104227155 104228984 -15515914 - L1PA6 LINE L1 -5 6149 4301 258 31 0 0 chr13 104229026 104229058 -15515840 - L1PA6 LINE L1 -2447 3699 3668 * 30423 94 10 18 chr13 104229043 104230537 -15514361 - L1P LINE L1 -1820 4326 2821 2175 96 14 17 chr13 104230537 104230830 -15514068 - AluY SINE Alu -17 294 3 30423 94 10 18 chr13 104230830 104231654 -15513244 - L1P LINE L1 -3325 2821 1992 2578 70 0 6 chr13 104231654 104231967 -15512931 - AluY SINE Alu 0 311 1 30423 94 10 18 chr13 104231967 104233999 -15510899 - L1P LINE L1 -4154 1992 11 966 181 0 13 chr13 104234408 104234563 -15510335 + FRAM SINE Alu 1 153 -23 959 244 104 46 chr13 104235132 104235526 -15509372 + MLT1J LTR MaLR 4 420 -91 427 246 112 65 chr13 104235737 104235943 -15508955 + L1MC4 LINE L1 7407 7602 -440 616 160 35 28 chr13 104235943 104236047 -15508851 + L1PA12 LINE L1 6015 6117 -51 2159 115 0 13 chr13 104236047 104236359 -15508539 + AluSg SINE Alu 1 308 -2 616 160 35 28 chr13 104236359 104236382 -15508516 + L1PA12 LINE L1 6117 6146 -22 1814 121 12 0 chr13 104236382 104236638 -15508260 + AluSq SINE Alu 49 307 -6 616 160 35 28 chr13 104236638 104236653 -15508245 + L1PA12 LINE L1 6146 6159 -9 427 246 112 65 chr13 104236653 104236706 -15508192 + L1MC4 LINE L1 7602 7678 -364 307 267 61 12 chr13 104237313 104237478 -15507420 + MIR SINE MIR 14 186 -76 2598 39 13 0 chr13 104237756 104238115 -15506783 - AluY SINE Alu 0 363 1 2252 114 19 3 chr13 104238233 104238540 -15506358 - AluSx SINE Alu 0 312 1 1869 214 21 5 chr13 104238561 104238990 -15505908 - L1MB3 LINE L1 -6 6177 5742 469 213 205 1 chr13 104239190 104239430 -15505468 + LTR50 LTR ERVL 3 317 -478 762 194 137 53 chr13 104239481 104239554 -15505344 + LTR50 LTR ERVL 485 550 -245 2107 123 3 19 chr13 104239554 104239862 -15505036 - AluSq SINE Alu -10 303 1 762 194 137 53 chr13 104239862 104240072 -15504826 + LTR50 LTR ERVL 550 792 -3 1079 212 118 41 chr13 104240079 104240418 -15504480 + MLT1A1 LTR MaLR 1 365 0 184 330 0 45 chr13 104240481 104240593 -15504305 + L2 LINE L2 1366 1472 -1842 1952 127 0 30 chr13 104240739 104241039 -15503859 - AluJb SINE Alu -21 291 1 1833 157 6 22 chr13 104241285 104241636 -15503262 - MER4A LTR ERV1 0 664 261 553 111 89 0 chr13 104241636 104241726 -15503172 - MER4A LTR ERV1 -566 98 1 2298 114 0 0 chr13 104241735 104242034 -15502864 - AluSx SINE Alu -13 299 1 15993 110 64 31 chr13 104242041 104244028 -15500870 - MER4A-int LTR ERV1 -2 6596 4676 2450 79 13 0 chr13 104244028 104244333 -15500565 - AluY SINE Alu 0 311 3 15993 110 64 31 chr13 104244333 104245504 -15499394 - MER4A-int LTR ERV1 -1922 4676 1862 1509 132 62 4 chr13 104245504 104245747 -15499151 + LTR8 LTR ERV1 1 257 -434 4151 70 88 43 chr13 104245747 104246438 -15498460 - MER4A-int LTR ERV1 -4103 2495 1774 2238 98 11 0 chr13 104246443 104246729 -15498169 + AluSg SINE Alu 1 289 -21 1443 82 9 150 chr13 104246730 104247065 -15497833 - MER4A-int LTR ERV1 -4266 1284 503 2933 89 136 44 chr13 104247074 104247195 -15497703 - MER4A-int LTR ERV1 -6021 577 469 2432 71 7 3 chr13 104247195 104247505 -15497393 - AluY SINE Alu 0 311 1 2933 89 136 44 chr13 104247505 104247911 -15496987 - MER4A-int LTR ERV1 -6129 469 1 1649 146 165 73 chr13 104247914 104248284 -15496614 - MER4A LTR ERV1 0 664 261 2112 102 0 0 chr13 104248304 104248578 -15496320 + AluSg SINE Alu 1 274 -36 228 35 0 0 chr13 104248582 104248611 -15496287 + (TAA)n Simple_repeat Simple_repeat 1 29 0 766 175 6 36 chr13 104248612 104248778 -15496120 + L1MC3 LINE L1 7625 7785 0 2488 84 3 0 chr13 104248786 104249094 -15495804 + AluSp SINE Alu 1 309 -4 215 287 35 23 chr13 104249125 104249212 -15495686 + MER5A DNA MER1_type 101 188 -1 2367 94 10 0 chr13 104249223 104249530 -15495368 + AluSq SINE Alu 1 310 -3 2238 119 0 10 chr13 104249575 104249886 -15495012 + AluSc SINE Alu 1 308 -1 310 234 30 108 chr13 104250210 104250270 -15494628 + Charlie8 DNA MER1_type 355 418 -1999 2223 111 0 0 chr13 104250270 104250559 -15494339 + AluSx SINE Alu 1 289 -23 310 234 30 108 chr13 104250559 104250665 -15494233 + Charlie8 DNA MER1_type 418 508 -1909 217 261 224 24 chr13 104251850 104252015 -15492883 + L3b LINE CR1 1102 1299 -284 876 122 0 0 chr13 104252857 104252988 -15491910 + Tigger3(Golem) DNA MER2_type 2589 2719 -310 1528 150 49 0 chr13 104253063 104253309 -15491589 + Tigger3(Golem) DNA MER2_type 2721 2978 -51 436 278 47 68 chr13 104253375 104253566 -15491332 + LTR16C LTR ERVL 1 187 -304 313 233 0 17 chr13 104253573 104253633 -15491265 + LTR16C LTR ERVL 433 491 0 1669 147 7 48 chr13 104253834 104254127 -15490771 + AluJb SINE Alu 1 281 -31 1343 208 65 0 chr13 104254142 104254421 -15490477 - MLT1A1 LTR MaLR -68 297 1 372 276 173 37 chr13 104254421 104254664 -15490234 - MER20B DNA MER1_type -507 276 1 1742 163 6 22 chr13 104254711 104255024 -15489874 - AluJo SINE Alu -4 308 1 1634 208 72 36 chr13 104255442 104255860 -15489038 + MER31B LTR ERV1 1 433 -33 1994 141 84 24 chr13 104255860 104256173 -15488725 + THE1C LTR MaLR 1 294 -134 2358 84 3 0 chr13 104256173 104256469 -15488429 + AluSq SINE Alu 1 297 -16 2579 43 0 13 chr13 104256471 104256772 -15488126 + AluY SINE Alu 1 297 -14 1994 141 84 24 chr13 104256772 104256847 -15488051 + THE1C LTR MaLR 294 428 0 230 236 83 0 chr13 104256847 104256886 -15488012 + MER31A LTR ERV1 440 484 -1 919 156 54 85 chr13 104257831 104258055 -15486843 - MER20 DNA MER1_type -1 218 2 434 261 157 7 chr13 104258060 104258213 -15486685 - MER5A DNA MER1_type -1 188 13 2611 171 45 72 chr13 104258425 104258715 -15486183 - Charlie1 DNA MER1_type -3 2758 2462 1891 166 3 0 chr13 104258715 104259011 -15485887 - AluSx SINE Alu -14 298 2 2611 171 45 72 chr13 104259011 104259382 -15485516 - Charlie1 DNA MER1_type -299 2462 2115 473 152 101 10 chr13 104259450 104259549 -15485349 - Charlie1 DNA MER1_type -2608 153 46 2146 92 17 0 chr13 104259670 104259962 -15484936 + AluSg SINE Alu 1 297 -13 194 265 174 0 chr13 104260053 104260151 -15484747 + L2 LINE L2 3146 3260 -12 1822 167 30 3 chr13 104260230 104260560 -15484338 - L1MA6 LINE L1 -22 6278 5940 2668 39 0 7 chr13 104262337 104262642 -15482256 + AluY SINE Alu 1 303 -8 286 257 27 0 chr13 104263353 104263427 -15481471 - L2 LINE L2 -6 3307 3232 2104 98 18 0 chr13 104263556 104263875 -15481023 - AluSq SINE Alu 0 313 9 314 311 60 30 chr13 104264103 104264424 -15480474 - L2 LINE L2 -2 3311 2943 200 298 0 0 chr13 104264707 104264754 -15480144 - L2 LINE L2 -85 3187 3141 2265 112 0 0 chr13 104265444 104265747 -15479151 - AluSc SINE Alu -4 305 3 183 343 0 14 chr13 104266022 104266092 -15478806 - MER5A DNA MER1_type -60 129 61 1088 81 0 182 chr13 104266256 104266492 -15478406 + 7SK RNA RNA 1 193 0 299 218 131 78 chr13 104266501 104266707 -15478191 - L2 LINE L2 -767 2547 2331 2379 87 3 0 chr13 104268541 104268840 -15476058 - AluSp SINE Alu -9 304 5 233 321 12 0 chr13 104268933 104269017 -15475881 - L2 LINE L2 0 3313 3229 2193 80 33 20 chr13 104270239 104270540 -15474358 + AluSq SINE Alu 1 305 -8 2369 103 3 0 chr13 104271012 104271324 -15473574 - AluSp SINE Alu 0 313 1 1047 104 0 0 chr13 104271325 104271459 -15473439 - AluSq/x SINE Alu -179 134 1 345 233 50 42 chr13 104271564 104271684 -15473214 - L1MC/D LINE L1 -2166 5642 5522 463 301 70 21 chr13 104271705 104271891 -15473007 - MIR SINE MIR -64 198 4 843 236 72 0 chr13 104272072 104272280 -15472618 - MIR SINE MIR -27 235 13 245 269 97 7 chr13 104273287 104273432 -15471466 - L1ME4a LINE L1 -150 5971 5814 201 39 0 0 chr13 104273641 104273667 -15471231 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 818 154 8 0 chr13 104273768 104273898 -15471000 - AluSq/x SINE Alu -177 135 5 2209 120 3 0 chr13 104273908 104274207 -15470691 - AluSx SINE Alu -12 300 1 2256 110 3 3 chr13 104274367 104274666 -15470232 - AluSx SINE Alu -13 299 1 242 314 98 0 chr13 104275426 104275528 -15469370 - MER113 DNA MER1_type? -16 505 394 605 180 101 129 chr13 104276406 104276630 -15468268 - MER113 DNA MER1_type? -111 410 181 279 0 0 0 chr13 104276630 104276661 -15468237 + (TG)n Simple_repeat Simple_repeat 2 32 0 2091 117 0 10 chr13 104276662 104276952 -15467946 - AluSx SINE Alu -25 287 1 605 180 101 129 chr13 104276952 104277142 -15467756 - MER113 DNA MER1_type? -339 182 6 2449 88 0 0 chr13 104277370 104277678 -15467220 - AluSq SINE Alu -5 308 1 238 220 20 0 chr13 104278435 104278485 -15466413 + Charlie8 DNA MER1_type 1362 1412 -1005 21 36 0 0 chr13 104278674 104278702 -15466196 + AT_rich Low_complexity Low_complexity 1 28 0 2441 175 34 40 chr13 104279901 104280027 -15464871 - L1MB7 LINE L1 -47 6137 6012 1550 114 45 0 chr13 104280027 104280247 -15464651 - MER30 DNA MER1_type 0 230 1 2441 175 34 40 chr13 104280247 104280675 -15464223 - L1MB7 LINE L1 -172 6012 5586 539 271 39 43 chr13 104280758 104280965 -15463933 + MIR SINE MIR 31 236 -26 29 47 0 0 chr13 104281497 104281540 -15463358 + AT_rich Low_complexity Low_complexity 1 43 0 776 248 51 12 chr13 104281551 104281805 -15463093 - L1ME4a LINE L1 -238 5883 5620 191 318 0 0 chr13 104282009 104282053 -15462845 + MIR SINE MIR 39 82 -180 364 305 48 12 chr13 104282314 104282481 -15462417 + LTR16C LTR ERVL 319 491 0 245 274 32 11 chr13 104282492 104282587 -15462311 + MIR SINE MIR 92 188 -74 610 312 152 9 chr13 104282598 104282941 -15461957 - L2 LINE L2 -4 3309 2918 4563 214 46 57 chr13 104283191 104283725 -15461173 - L1M4 LINE L1 -2267 3879 3341 708 99 0 0 chr13 104283725 104283826 -15461072 - L1MB3 LINE L1 -3 6180 6080 4563 214 46 57 chr13 104283826 104284590 -15460308 - L1M4 LINE L1 -2805 3341 2595 1545 174 98 43 chr13 104284590 104284958 -15459940 - MLT1B LTR MaLR -2 388 1 4563 214 46 57 chr13 104284958 104285071 -15459827 - L1M4 LINE L1 -3551 2595 2482 346 273 45 68 chr13 104285128 104285348 -15459550 - L1MC4 LINE L1 0 8042 7828 2533 119 22 49 chr13 104285684 104286137 -15458761 - L1MB2 LINE L1 -2 6169 5729 333 314 16 24 chr13 104286170 104286294 -15458604 - L2 LINE L2 -5 3308 3186 463 250 43 29 chr13 104286329 104286469 -15458429 + MER104 DNA Tc2 2 143 -37 1241 336 39 10 chr13 104286809 104287440 -15457458 + L2 LINE L2 2401 3057 -256 2395 95 3 0 chr13 104287464 104287770 -15457128 + AluSp SINE Alu 1 307 -6 958 254 110 32 chr13 104287790 104288136 -15456762 - MLT1I LTR MaLR -21 388 16 419 271 57 38 chr13 104288146 104288356 -15456542 + L2 LINE L2 3098 3311 -2 308 363 30 0 chr13 104288436 104288637 -15456261 - L2 LINE L2 -1966 1348 1142 2298 96 0 20 chr13 104288839 104289141 -15455757 - AluSx SINE Alu -16 296 1 267 189 95 14 chr13 104289156 104289230 -15455668 - MIR SINE MIR -66 196 117 4330 176 52 50 chr13 104290159 104290665 -15454233 - Tigger6a DNA MER2_type -514 1083 579 1881 186 48 78 chr13 104290665 104290729 -15454169 - MLT1D LTR MaLR -4 501 437 2046 129 0 25 chr13 104290729 104291047 -15453851 + AluSx SINE Alu 1 310 -2 1881 186 48 78 chr13 104291047 104291316 -15453582 - MLT1D LTR MaLR -68 437 186 2220 107 3 0 chr13 104291316 104291605 -15453293 + AluSg SINE Alu 1 290 -20 1881 186 48 78 chr13 104291605 104291786 -15453112 - MLT1D LTR MaLR -319 186 1 4330 176 52 50 chr13 104291786 104291954 -15452944 - Tigger6a DNA MER2_type -1018 579 413 2250 122 7 0 chr13 104291954 104292258 -15452640 - AluSx SINE Alu -6 306 1 4330 176 52 50 chr13 104292258 104292578 -15452320 - Tigger6a DNA MER2_type -1184 413 3 765 257 159 83 chr13 104292626 104293187 -15451711 + L1MC4 LINE L1 5954 6471 -1392 1846 134 0 62 chr13 104293187 104293507 -15451391 + AluJb SINE Alu 1 300 -12 765 257 159 83 chr13 104293507 104293659 -15451239 + L1MC4 LINE L1 6471 6610 -1253 2347 107 0 0 chr13 104293659 104293958 -15450940 - AluSg SINE Alu -11 299 1 765 257 159 83 chr13 104293958 104294336 -15450562 + L1MC4 LINE L1 6610 7173 -690 206 32 32 0 chr13 104294510 104294541 -15450357 + (TTA)n Simple_repeat Simple_repeat 2 33 0 449 0 0 0 chr13 104294543 104294593 -15450305 - LTR17 LTR ERV1 -456 324 275 357 304 119 31 chr13 104294704 104294719 -15450179 - MIR SINE MIR -32 230 218 2412 66 13 35 chr13 104294719 104295037 -15449861 - AluSx SINE Alu -1 311 1 357 304 119 31 chr13 104295037 104295215 -15449683 - MIR SINE MIR -44 218 20 5032 146 50 84 chr13 104295741 104296240 -15448658 + L1MA4A LINE L1 4402 4916 -1387 1915 147 25 0 chr13 104296240 104296525 -15448373 + AluJo SINE Alu 1 292 -20 5032 146 50 84 chr13 104296525 104297118 -15447780 + L1MA4A LINE L1 4916 5527 -776 2203 95 11 0 chr13 104297118 104297402 -15447496 + AluSq SINE Alu 2 288 -25 5032 146 50 84 chr13 104297402 104297819 -15447079 + L1MA4A LINE L1 5527 5956 -347 243 0 0 0 chr13 104297819 104297846 -15447052 + (CA)n Simple_repeat Simple_repeat 2 28 0 5032 146 50 84 chr13 104297846 104298220 -15446678 + L1MA4A LINE L1 5956 6221 -82 2133 117 0 0 chr13 104298220 104298501 -15446397 + AluSx SINE Alu 1 281 -31 5032 146 50 84 chr13 104298501 104298578 -15446320 + L1MA4A LINE L1 6221 6299 -4 21 0 0 0 chr13 104299213 104299234 -15445664 + AT_rich Low_complexity Low_complexity 1 21 0 211 268 0 0 chr13 104299884 104299940 -15444958 + MER5B DNA MER1_type 1 56 -122 278 277 9 45 chr13 104300003 104300115 -15444783 + MER5A DNA MER1_type 81 188 -1 1940 158 0 16 chr13 104301525 104301836 -15443062 + AluJb SINE Alu 1 306 -6 2132 174 70 2 chr13 104301847 104302278 -15442620 + L1MB4 LINE L1 5691 6150 -30 5785 79 6 149 chr13 104302280 104303570 -15441328 - SVA Other Other -760 1386 433 198 0 0 0 chr13 104303765 104303787 -15441111 + (T)n Simple_repeat Simple_repeat 1 22 0 180 111 0 0 chr13 104304665 104304692 -15440206 + (TAA)n Simple_repeat Simple_repeat 3 29 0 24 0 0 0 chr13 104304737 104304761 -15440137 + AT_rich Low_complexity Low_complexity 1 24 0 260 295 0 0 chr13 104304899 104304960 -15439938 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 2331 86 3 3 chr13 104305358 104305661 -15439237 - AluSx SINE Alu -7 305 3 2031 90 61 0 chr13 104306102 104306380 -15438518 + AluSg SINE Alu 1 295 -15 859 165 0 0 chr13 104307539 104307666 -15437232 - FLAM_C SINE Alu -16 127 1 242 29 29 0 chr13 104307724 104307759 -15437139 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2619 7 0 0 chr13 104307761 104308044 -15436854 - AluY SINE Alu -28 283 1 1656 81 5 5 chr13 104308074 104308283 -15436615 + L1PA8 LINE L1 5950 6158 -14 291 308 109 51 chr13 104308349 104308742 -15436156 + L2 LINE L2 1785 2200 -1114 1632 174 9 40 chr13 104308742 104308919 -15435979 - AluJo SINE Alu -1 311 147 1935 126 37 7 chr13 104308919 104309213 -15435685 - AluSq SINE Alu -10 303 1 1632 174 9 40 chr13 104309213 104309356 -15435542 - AluJo SINE Alu -165 147 1 5887 145 28 39 chr13 104309545 104311271 -15433627 - L1PA16 LINE L1 0 6166 4473 2267 90 0 22 chr13 104311271 104311583 -15433315 - AluY SINE Alu -6 305 1 5887 145 28 39 chr13 104311583 104311935 -15432963 - L1PA16 LINE L1 -1693 4473 4119 284 341 84 35 chr13 104311970 104312196 -15432702 + L2 LINE L2 2549 2785 -529 396 231 83 25 chr13 104312213 104312334 -15432564 + MIR SINE MIR 2 129 -133 787 198 0 16 chr13 104312466 104312592 -15432306 - FLAM_A SINE Alu -9 124 1 26 0 0 0 chr13 104313312 104313338 -15431560 + AT_rich Low_complexity Low_complexity 1 26 0 256 179 53 11 chr13 104313589 104313684 -15431214 + (TA)n Simple_repeat Simple_repeat 2 100 0 302 249 12 71 chr13 104313847 104313982 -15430916 + MIR3 SINE MIR 74 199 -9 2430 84 0 0 chr13 104314048 104314344 -15430554 - AluSx SINE Alu -16 296 1 217 188 104 0 chr13 104314805 104314853 -15430045 + L2 LINE L2 3214 3266 -6 269 237 134 52 chr13 104316606 104316703 -15428195 + L2 LINE L2 3209 3313 0 269 51 26 0 chr13 104317609 104317648 -15427250 + (TTCCC)n Simple_repeat Simple_repeat 3 42 0 657 142 150 18 chr13 104318481 104318594 -15426304 - FLAM_C SINE Alu -14 129 2 382 274 49 64 chr13 104319152 104319356 -15425542 + MIR SINE MIR 50 250 -12 1834 181 11 34 chr13 104322405 104322758 -15422140 + Tigger7 DNA MER2_type 1 345 -2142 1064 108 7 0 chr13 104322752 104322900 -15421998 + Tigger7 DNA MER2_type 2439 2587 0 * 2406 88 0 25 chr13 104322951 104323271 -15421627 + AluSx SINE Alu 1 312 0 1694 259 65 26 chr13 104323867 104324470 -15420428 + L1ME3A LINE L1 5322 5947 -223 182 357 83 6 chr13 104325070 104325227 -15419671 + MIR3 SINE MIR 31 199 -9 21 0 0 0 chr13 104325498 104325519 -15419379 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 104325545 104325566 -15419332 + AT_rich Low_complexity Low_complexity 1 21 0 224 174 29 29 chr13 104326691 104326760 -15418138 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 1509 109 66 0 chr13 104326802 104327013 -15417885 + MER30 DNA MER1_type 5 229 -1 728 209 19 25 chr13 104327238 104327396 -15417502 - L1MB2 LINE L1 -34 6137 5981 677 225 36 7 chr13 104327363 104327534 -15417364 - L1MB2 LINE L1 -496 5687 5497 * 453 189 123 16 chr13 104327744 104327866 -15417032 - L1MB2 LINE L1 -841 5305 5171 266 270 50 30 chr13 104328234 104328334 -15416564 + L3 LINE CR1 617 718 -859 603 242 67 73 chr13 104328430 104328760 -15416138 - MLT1J1 LTR MaLR -110 336 9 1876 159 19 16 chr13 104328848 104329156 -15415742 + AluJb SINE Alu 1 309 -3 587 329 77 12 chr13 104329359 104329763 -15415135 + L3 LINE CR1 1143 1572 -5 27 62 0 0 chr13 104330171 104330219 -15414679 + AT_rich Low_complexity Low_complexity 1 48 0 1212 289 53 24 chr13 104331528 104332105 -15412793 - L2 LINE L2 -15 3298 2702 420 207 17 43 chr13 104332789 104332905 -15411993 - L1MC5 LINE L1 -44 7917 7805 1750 160 71 54 chr13 104332998 104333366 -15411532 - MLT1A2 LTR MaLR 0 374 1 332 299 103 61 chr13 104333395 104333609 -15411289 - L1MB2 LINE L1 -1308 4838 4616 661 239 47 33 chr13 104334205 104334481 -15410417 - HAL1 LINE L1 -1135 1372 1093 1618 222 81 74 chr13 104334483 104334854 -15410044 - L1ME3A LINE L1 -4 6166 5799 1862 146 28 3 chr13 104334854 104335142 -15409756 - AluJo SINE Alu -17 295 1 1618 222 81 74 chr13 104335142 104335223 -15409675 - L1ME3A LINE L1 -371 5799 5720 1958 148 7 7 chr13 104335223 104335527 -15409371 - AluJb SINE Alu 0 312 9 1618 222 81 74 chr13 104335527 104335653 -15409245 - L1ME3A LINE L1 -450 5720 5583 801 154 191 22 chr13 104335658 104335878 -15409020 - MLT1F1 LTR MaLR -80 487 195 507 224 42 0 chr13 104335879 104336026 -15408872 - L1ME3A LINE L1 -673 5491 5339 770 250 66 91 chr13 104336030 104336502 -15408396 - HAL1 LINE L1 -1427 1080 621 1789 225 59 25 chr13 104336674 104337259 -15407639 - MER21B LTR ERV1 -81 782 127 750 287 60 30 chr13 104337483 104337748 -15407150 - HAL1 LINE L1 -2225 282 10 2436 90 3 0 chr13 104337761 104338072 -15406826 + AluSp SINE Alu 1 312 -1 237 304 17 17 chr13 104339604 104339719 -15405179 + CT-rich Low_complexity Low_complexity 1 115 0 207 304 36 0 chr13 104339839 104339895 -15405003 - L2 LINE L2 -2873 441 384 * 366 343 45 38 chr13 104339893 104340122 -15404776 + L2 LINE L2 3019 3252 -61 1995 166 86 3 chr13 104340122 104340459 -15404439 - MLT1A1 LTR MaLR 0 365 1 366 343 45 38 chr13 104340459 104340494 -15404404 + L2 LINE L2 3252 3285 -28 236 259 0 0 chr13 104340558 104340616 -15404282 + L2 LINE L2 2594 2651 -663 248 130 22 0 chr13 104341305 104341351 -15403547 + CT-rich Low_complexity Low_complexity 2 48 0 * 264 100 0 0 chr13 104341341 104341381 -15403517 + (TC)n Simple_repeat Simple_repeat 1 40 0 2119 106 0 23 chr13 104341421 104341758 -15403140 + AluSx SINE Alu 1 312 0 965 193 9 66 chr13 104342546 104342774 -15402124 - MER20 DNA MER1_type -1 218 4 375 169 135 0 chr13 104343521 104343610 -15401288 - LTR67 LTR ERVL -11 546 446 263 356 42 0 chr13 104343709 104343827 -15401071 + L2 LINE L2 3150 3272 0 217 275 99 30 chr13 104344060 104344191 -15400707 - MIR SINE MIR -83 179 40 2408 97 0 0 chr13 104344240 104344550 -15400348 - AluSg SINE Alu 0 310 1 941 186 37 16 chr13 104344905 104345124 -15399774 - L1MC3 LINE L1 -5 8037 7670 645 229 58 43 chr13 104345124 104345312 -15399586 - L1MC4 LINE L1 -308 7734 7544 345 222 205 21 chr13 104345439 104345673 -15399225 - L1MC5 LINE L1 -48 7913 7637 237 108 0 0 chr13 104345787 104345824 -15399074 + (TCC)n Simple_repeat Simple_repeat 1 37 0 2078 134 3 10 chr13 104345904 104346209 -15398689 - AluJo SINE Alu -9 303 1 251 346 99 6 chr13 104346570 104346732 -15398166 + LTR67 LTR ERVL 379 555 -2 1593 159 20 36 chr13 104347005 104347307 -15397591 - L1PA16 LINE L1 0 6166 5870 333 116 14 43 chr13 104347534 104347603 -15397295 - L1MC5 LINE L1 -44 7917 7851 750 163 16 24 chr13 104347942 104348065 -15396833 - AluJb SINE Alu -13 299 178 957 126 0 15 chr13 104348133 104348302 -15396596 - FLAM_C SINE Alu 0 167 1 250 135 0 0 chr13 104349264 104349301 -15395597 - MLT1E LTR MaLR -1 592 556 197 341 31 39 chr13 104349380 104349509 -15395389 - L2 LINE L2 -10 3303 3176 209 320 118 39 chr13 104349521 104349699 -15395199 - MIR3 SINE MIR -1 207 16 768 255 90 28 chr13 104350165 104350455 -15394443 - MLT1I LTR MaLR 0 409 102 828 264 41 16 chr13 104350572 104350814 -15394084 + MIR SINE MIR 15 262 0 2219 112 10 16 chr13 104350961 104351274 -15393624 + AluSx SINE Alu 1 311 -1 488 265 205 0 chr13 104351577 104351762 -15393136 + MIR SINE MIR 25 247 -15 190 327 164 0 chr13 104352377 104352481 -15392417 - L2 LINE L2 -2 3270 3150 2371 83 0 22 chr13 104352645 104352959 -15391939 - AluY SINE Alu -4 307 1 27 0 0 0 chr13 104355271 104355298 -15389600 + AT_rich Low_complexity Low_complexity 1 27 0 231 236 67 11 chr13 104357574 104357663 -15387235 - L1ME LINE L1 -359 5803 5710 675 282 78 16 chr13 104358266 104358652 -15386246 + L1M4 LINE L1 2143 2552 -3594 850 262 83 0 chr13 104358763 104359172 -15385726 + L1M4 LINE L1 2722 3164 -2982 329 249 62 107 chr13 104359758 104359935 -15384963 + L1ME4a LINE L1 5730 5898 -223 222 37 0 0 chr13 104359967 104359994 -15384904 + (CA)n Simple_repeat Simple_repeat 2 28 0 210 217 43 87 chr13 104360263 104360355 -15384543 - MIR SINE MIR -55 207 120 192 294 274 20 chr13 104360917 104361118 -15383780 - L3b LINE CR1 -203 1380 1129 194 162 206 59 chr13 104361133 104361201 -15383697 - L2 LINE L2 0 3272 3195 23 0 0 0 chr13 104362422 104362445 -15382453 + AT_rich Low_complexity Low_complexity 1 23 0 189 302 115 29 chr13 104364724 104364863 -15380035 + L2 LINE L2 2899 3049 -223 544 251 159 29 chr13 104365129 104365336 -15379562 - MIR SINE MIR 0 262 29 201 363 80 26 chr13 104365998 104366111 -15378787 + L2 LINE L2 3195 3313 0 2210 96 0 0 chr13 104366406 104366715 -15378183 - AluSx SINE Alu 0 309 1 365 250 131 56 chr13 104366840 104367000 -15377898 - MIR SINE MIR -88 174 3 380 237 79 22 chr13 104367313 104367452 -15377446 + L1ME4a LINE L1 5518 5664 -457 583 342 182 30 chr13 104368596 104369172 -15375726 + L3 LINE CR1 907 1570 -7 359 333 0 0 chr13 104369278 104369380 -15375518 + MIR3 SINE MIR 96 197 -11 2284 96 7 0 chr13 104369636 104369928 -15374970 - AluSc SINE Alu -15 294 1 1973 142 0 35 chr13 104370118 104370429 -15374469 - AluJo SINE Alu -10 302 3 1575 194 0 20 chr13 104370572 104370866 -15374032 + AluJo SINE Alu 9 296 -16 590 246 127 63 chr13 104371598 104371866 -15373032 - L2 LINE L2 0 3313 3029 211 255 0 0 chr13 104372276 104372323 -15372575 - L2 LINE L2 -19 3294 3248 180 171 49 0 chr13 104372500 104372541 -15372357 + L2 LINE L2 3195 3237 -35 257 257 0 14 chr13 104372930 104373000 -15371898 + Charlie8 DNA MER1_type 2345 2413 -4 2516 57 0 10 chr13 104373489 104373803 -15371095 - AluY SINE Alu 0 311 1 288 336 0 18 chr13 104373808 104373921 -15370977 - L2 LINE L2 -569 2745 2635 253 313 24 12 chr13 104375869 104375952 -15368946 + MIR SINE MIR 40 123 -85 463 286 174 9 chr13 104376039 104376263 -15368635 + MIR SINE MIR 2 262 0 375 23 0 0 chr13 104376970 104377014 -15367884 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 316 224 92 19 chr13 104377343 104377500 -15367398 + MIR SINE MIR 13 262 0 26 0 0 0 chr13 104378397 104378423 -15366475 + AT_rich Low_complexity Low_complexity 1 26 0 1739 112 4 0 chr13 104378743 104378975 -15365923 - AluSp SINE Alu -18 295 63 304 355 0 37 chr13 104379112 104379301 -15365597 + L1ME4a LINE L1 5700 5881 -240 2268 72 0 66 chr13 104379490 104379809 -15365089 + AluY SINE Alu 4 301 -10 21 0 0 0 chr13 104380243 104380264 -15364634 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 104381556 104381578 -15363320 + AT_rich Low_complexity Low_complexity 1 22 0 1973 108 35 7 chr13 104382284 104382570 -15362328 - AluSx SINE Alu -18 294 1 742 174 0 0 chr13 104384288 104384431 -15360467 + FLAM_C SINE Alu 3 145 0 25 51 0 0 chr13 104384897 104384936 -15359962 + AT_rich Low_complexity Low_complexity 1 39 0 781 271 88 13 chr13 104385241 104385547 -15359351 + MLT1I LTR MaLR 79 407 -2 441 219 53 9 chr13 104385552 104385666 -15359232 - MIR SINE MIR -43 219 101 353 253 13 0 chr13 104385666 104385745 -15359153 + Tigger3(Golem) DNA MER2_type 1 80 -2949 604 178 28 0 chr13 104385876 104385983 -15358915 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 263 325 12 36 chr13 104385983 104386066 -15358832 - MIR SINE MIR -160 102 22 2360 82 0 3 chr13 104386066 104386370 -15358528 - AluY SINE Alu -8 303 1 4539 146 16 13 chr13 104386523 104387385 -15357513 - L1MB1 LINE L1 -26 6142 5278 28 61 0 0 chr13 104387465 104387514 -15357384 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 104388578 104388599 -15356299 + AT_rich Low_complexity Low_complexity 1 21 0 4095 213 59 35 chr13 104388810 104390366 -15354532 - L1ME1 LINE L1 0 6166 4648 2224 211 59 20 chr13 104390366 104390911 -15353987 + MLT1F1 LTR MaLR 2 567 0 4095 213 59 35 chr13 104390911 104391146 -15353752 - L1ME1 LINE L1 -1518 4648 4420 2356 103 0 0 chr13 104391146 104391448 -15353450 + AluSg SINE Alu 1 302 -8 4095 213 59 35 chr13 104391448 104391737 -15353161 - L1ME1 LINE L1 -1746 4420 4036 309 178 56 33 chr13 104392254 104392344 -15352554 + MLT1J LTR MaLR 420 511 0 502 237 25 0 chr13 104392786 104392904 -15351994 + L2 LINE L2 3193 3313 0 861 128 0 0 chr13 104393947 104394064 -15350834 + AluJb SINE Alu 1 117 -195 21 0 0 0 chr13 104394091 104394112 -15350786 + AT_rich Low_complexity Low_complexity 1 21 0 380 355 51 0 chr13 104394457 104394595 -15350303 - L2 LINE L2 -3 3269 3125 862 267 90 45 chr13 104394895 104394937 -15349961 + L1MEc LINE L1 1826 1865 -4350 1579 144 7 50 chr13 104394937 104395214 -15349684 - AluJo SINE Alu -33 279 15 862 267 90 45 chr13 104395214 104395313 -15349585 + L1MEc LINE L1 1865 1958 -4257 808 181 148 0 chr13 104395313 104395495 -15349403 + MER6B DNA MER2_type 2 210 0 862 267 90 45 chr13 104395495 104396145 -15348753 + L1MEc LINE L1 1958 2622 -3593 779 134 22 0 chr13 104396855 104396989 -15347909 + BC200 scRNA scRNA 16 152 -48 236 291 12 0 chr13 104397060 104397146 -15347752 - L1P LINE L1 -736 5415 5329 279 307 123 19 chr13 104397204 104397683 -15347215 - L1M4 LINE L1 -894 5252 4724 282 260 13 13 chr13 104397871 104397948 -15346950 + CT-rich Low_complexity Low_complexity 2 78 0 539 305 31 41 chr13 104398073 104398391 -15346507 - L1M4 LINE L1 -1445 4701 4387 289 186 36 100 chr13 104398506 104398646 -15346252 - L1MEd LINE L1 -4863 1256 1126 1252 114 41 102 chr13 104398869 104399015 -15345883 + MER30 DNA MER1_type 1 128 -102 2361 107 0 0 chr13 104399015 104399325 -15345573 - AluSx SINE Alu -2 310 1 1252 114 41 102 chr13 104399325 104399423 -15345475 + MER30 DNA MER1_type 128 230 0 1002 291 116 38 chr13 104399661 104400488 -15344410 + L2 LINE L2 1823 3299 -14 21 0 0 0 chr13 104400498 104400519 -15344379 + AT_rich Low_complexity Low_complexity 1 21 0 202 291 120 68 chr13 104402814 104402931 -15341967 - L2 LINE L2 -828 2486 2364 422 294 72 28 chr13 104403042 104403222 -15341676 - LTR16A LTR ERVL -39 411 224 443 185 85 23 chr13 104403222 104403352 -15341546 - MLT1B LTR MaLR -235 155 18 186 229 0 21 chr13 104404394 104404442 -15340456 - L2 LINE L2 -73 3240 3194 397 309 8 32 chr13 104404877 104405003 -15339895 - L2 LINE L2 -1 3271 3149 201 329 86 13 chr13 104405064 104405261 -15339637 - MIR3 SINE MIR -34 228 12 2392 87 0 0 chr13 104406698 104407008 -15337890 - AluSg SINE Alu 0 310 1 210 100 0 0 chr13 104407646 104407676 -15337222 + L2 LINE L2 3022 3051 -262 222 221 173 39 chr13 104407759 104407863 -15337035 + L2 LINE L2 3169 3286 -27 860 139 0 29 chr13 104407963 104408100 -15336798 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr13 104408278 104408302 -15336596 + GC_rich Low_complexity Low_complexity 1 24 0 249 216 113 21 chr13 104408311 104408408 -15336490 - L2 LINE L2 -1357 1957 1852 222 276 11 35 chr13 104409077 104409164 -15335734 + L2 LINE L2 3150 3234 -79 1303 159 4 9 chr13 104409696 104409923 -15334975 + AluJo SINE Alu 1 226 -86 3565 192 79 28 chr13 104410225 104410308 -15334590 + MER21B LTR ERV1 1 78 -785 3820 171 65 57 chr13 104410308 104411253 -15333645 - LTR13 LTR ERVK -2 952 1 3565 192 79 28 chr13 104411253 104411980 -15332918 + MER21B LTR ERV1 78 852 -11 530 216 72 32 chr13 104412286 104412472 -15332426 + MER58 DNA MER1_type 6 2420 0 1413 177 92 6 chr13 104413151 104413467 -15331431 - L1MB8 LINE L1 0 6178 5836 211 265 15 15 chr13 104413659 104413727 -15331171 - L2 LINE L2 -51 3221 3154 211 317 0 49 chr13 104414381 104414463 -15330435 + MIR SINE MIR 73 150 -58 258 246 35 0 chr13 104415367 104415424 -15329474 - MIR3 SINE MIR -38 170 112 199 315 11 33 chr13 104417557 104417649 -15327249 + L2 LINE L2 1589 1678 -1636 1717 173 94 6 chr13 104417991 104418309 -15326589 + MER7A DNA MER2_type 2 345 -1 254 333 78 31 chr13 104418861 104418990 -15325908 - L2 LINE L2 -2 3270 3136 1498 180 39 27 chr13 104419217 104419551 -15325347 + Charlie1 DNA MER1_type 2292 2629 -132 191 279 38 38 chr13 104419559 104419638 -15325260 - L2 LINE L2 -550 2764 2686 527 361 121 10 chr13 104419732 104420236 -15324662 - L2 LINE L2 -867 2447 1888 763 282 34 13 chr13 104421303 104421517 -15323381 - MIR SINE MIR -43 219 3 217 264 0 0 chr13 104422081 104422134 -15322764 + (TA)n Simple_repeat Simple_repeat 1 53 0 971 164 5 75 chr13 104422556 104422757 -15322141 - MER20 DNA MER1_type 0 219 33 906 219 6 6 chr13 104422818 104422982 -15321916 + FAM SINE Alu 2 165 -10 27 62 0 0 chr13 104423013 104423061 -15321837 + AT_rich Low_complexity Low_complexity 1 48 0 778 289 90 49 chr13 104423135 104424288 -15320610 - L1ME2 LINE L1 -284 5863 4647 575 277 126 19 chr13 104424386 104424763 -15320135 - MLT1J LTR MaLR -22 489 9 757 276 57 36 chr13 104425183 104425629 -15319269 - L1ME2 LINE L1 -2197 3932 3457 1162 235 93 6 chr13 104425660 104426005 -15318893 - L1ME3A LINE L1 -243 5927 5553 610 295 155 14 chr13 104426006 104427079 -15317819 - L1ME2 LINE L1 -2697 3432 2209 814 324 117 35 chr13 104427216 104427950 -15316948 - L1ME2 LINE L1 -5321 798 5 1920 238 148 27 chr13 104429138 104429655 -15315243 + L1MC4 LINE L1 6000 6453 -1589 342 0 0 0 chr13 104429655 104429693 -15315205 + (TG)n Simple_repeat Simple_repeat 2 39 0 1920 238 148 27 chr13 104429693 104430196 -15314702 + L1MC4 LINE L1 6453 7233 -809 976 222 0 11 chr13 104430209 104430385 -15314513 + Tigger5 DNA MER2_type 2 175 -2148 443 310 49 11 chr13 104430677 104430924 -15313974 - L1MC4a LINE L1 -334 5787 5619 907 147 0 37 chr13 104431083 104431246 -15313652 + FRAM SINE Alu 1 156 -20 4065 156 39 0 chr13 104431274 104431974 -15312924 - L1MB3 LINE L1 -8 6175 5449 271 318 149 24 chr13 104431975 104432359 -15312539 - L1MC4a LINE L1 -1818 4328 3897 2641 35 0 0 chr13 104432944 104433254 -15311644 + AluY SINE Alu 1 310 -1 355 250 0 30 chr13 104433737 104433837 -15311061 + Charlie4 DNA MER1_type 166 262 -1699 311 301 194 14 chr13 104433948 104434164 -15310734 - L2 LINE L2 -2 3270 3016 402 250 58 17 chr13 104434419 104434539 -15310359 + L2 LINE L2 3188 3312 -1 1549 169 18 28 chr13 104434572 104434856 -15310042 + AluJo SINE Alu 1 281 -31 1324 164 116 36 chr13 104435366 104435695 -15309203 + MLT1B LTR MaLR 22 376 -14 847 130 104 0 chr13 104436349 104436503 -15308395 - AluJb SINE Alu 0 312 143 408 269 90 7 chr13 104436736 104436881 -15308017 + MIR SINE MIR 88 244 -18 1707 161 17 0 chr13 104437499 104437798 -15307100 + AluJo SINE Alu 1 304 -8 191 146 24 0 chr13 104437909 104437950 -15306948 + (TATG)n Simple_repeat Simple_repeat 3 44 0 840 146 0 0 chr13 104437980 104438158 -15306740 + (CA)n Simple_repeat Simple_repeat 1 178 0 374 333 75 38 chr13 104438525 104438738 -15306160 - MIR SINE MIR -29 233 13 31 0 0 0 chr13 104438833 104438864 -15306034 + AT_rich Low_complexity Low_complexity 1 31 0 2713 151 18 5 chr13 104439267 104440033 -15304865 + L1M2 LINE L1 4930 5707 -584 872 231 144 31 chr13 104440047 104440367 -15304531 - MLT1D LTR MaLR -148 357 2 1010 234 137 31 chr13 104441449 104441895 -15303003 + MER39 LTR ERV1 5 707 0 1146 267 146 16 chr13 104441920 104442426 -15302472 - L1MC4a LINE L1 -1982 5826 5255 21 71 0 0 chr13 104443103 104443145 -15301753 + AT_rich Low_complexity Low_complexity 1 42 0 903 218 120 18 chr13 104443155 104443430 -15301468 + MLT1C LTR MaLR 158 460 -7 1110 220 56 3 chr13 104443446 104443751 -15301147 + Charlie4a DNA MER1_type 162 482 -26 440 171 29 9 chr13 104443996 104444101 -15300797 - L1MB4 LINE L1 0 6180 6074 2247 101 0 0 chr13 104444233 104444539 -15300359 + AluSq SINE Alu 1 306 -7 192 40 0 0 chr13 104444738 104444763 -15300135 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2553 144 152 20 chr13 104445273 104445813 -15299085 + MER39 LTR ERV1 1 611 -96 856 92 0 8 chr13 104445813 104445933 -15298965 + FLAM_C SINE Alu 1 119 -24 2354 40 0 17 chr13 104445953 104446282 -15298616 + AluY SINE Alu 1 311 0 530 184 29 0 chr13 104446291 104446394 -15298504 + MER39 LTR ERV1 601 706 -1 527 221 54 63 chr13 104446506 104446728 -15298170 + MER39-int LTR ERV1 92 311 -6020 547 150 189 24 chr13 104446832 104446959 -15297939 + MER39-int LTR ERV1 1378 1525 -4806 273 231 0 0 chr13 104446982 104447034 -15297864 + MER67B LTR ERV1 145 196 -465 1994 113 31 0 chr13 104447053 104447346 -15297552 - AluSq SINE Alu -11 302 1 1208 204 22 109 chr13 104447377 104447764 -15297134 + MER39-int LTR ERV1 276 606 -4330 269 127 0 143 chr13 104447768 104447831 -15297067 - MER31A LTR ERV1 -182 303 250 332 250 26 0 chr13 104447831 104447907 -15296991 + MER31A LTR ERV1 11 88 -397 396 74 56 0 chr13 104447916 104447970 -15296928 - MER54A LTR ERVL -842 59 3 445 260 0 10 chr13 104447983 104448087 -15296811 + MER39-int LTR ERV1 772 874 -4062 325 216 52 45 chr13 104448285 104448419 -15296479 + MER39-int LTR ERV1 1339 1473 -6647 1905 137 6 25 chr13 104448442 104448756 -15296142 - AluJo SINE Alu -4 308 1 2244 82 0 3 chr13 104448807 104449111 -15295787 + AluSg SINE Alu 1 303 -7 486 176 25 94 chr13 104449126 104449285 -15295613 + MER39-int LTR ERV1 2438 2585 -2351 954 142 0 0 chr13 104449295 104449436 -15295462 + AluJb SINE Alu 1 141 -171 36 0 0 0 chr13 104449453 104449489 -15295409 + AT_rich Low_complexity Low_complexity 1 36 0 5963 205 88 52 chr13 104449489 104450286 -15294612 + MER39-int LTR ERV1 2582 3349 -1587 2190 98 7 3 chr13 104450286 104450591 -15294307 - AluSx SINE Alu -6 306 1 5963 205 88 52 chr13 104450591 104451807 -15293091 + MER39-int LTR ERV1 3349 4765 -171 888 166 98 12 chr13 104451986 104452149 -15292749 + MER39 LTR ERV1 4 180 -527 574 174 40 154 chr13 104452249 104452496 -15292402 + L1MC4 LINE L1 7823 8041 -1 2089 79 0 24 chr13 104454911 104455203 -15289695 + AluY SINE Alu 1 285 -26 255 156 0 0 chr13 104455170 104455215 -15289683 + AluY SINE Alu 260 304 -4 201 171 0 0 chr13 104455232 104455267 -15289631 + T-rich Low_complexity Low_complexity 1 35 0 251 343 29 51 chr13 104455522 104455659 -15289239 - L2 LINE L2 -1 3271 3138 1147 176 197 26 chr13 104456099 104456515 -15288383 - LTR54B LTR ERV1 -2 496 10 223 246 29 14 chr13 104456860 104456929 -15287969 + L2 LINE L2 3136 3205 -67 1331 138 40 31 chr13 104457872 104458096 -15286802 - AluJb SINE Alu -2 310 85 188 65 0 32 chr13 104459058 104459089 -15285809 + (CCTCG)n Simple_repeat Simple_repeat 2 31 0 193 234 191 11 chr13 104459222 104459316 -15285582 - L2 LINE L2 -22 3250 3140 236 268 0 0 chr13 104459854 104459910 -15284988 - MIR SINE MIR -11 251 196 225 97 0 0 chr13 104460096 104460127 -15284771 - Tigger4(Zombi) DNA MER2_type 0 2731 2701 * 10584 123 27 7 chr13 104460119 104460323 -15284575 - Tigger4(Zombi) DNA MER2_type -761 1970 1771 2361 112 0 0 chr13 104460323 104460628 -15284270 + AluSx SINE Alu 1 305 -7 10584 123 27 7 chr13 104460628 104462316 -15282582 - Tigger4(Zombi) DNA MER2_type -960 1771 1 190 304 36 62 chr13 104463886 104463998 -15280900 + L3 LINE CR1 192 300 -1277 838 283 154 77 chr13 104464042 104464679 -15280219 + L3 LINE CR1 439 1124 -453 210 282 14 14 chr13 104465037 104465108 -15279790 + L3 LINE CR1 1263 1333 -244 290 296 175 24 chr13 104465268 104465474 -15279424 - L3 LINE CR1 -615 962 726 196 274 20 0 chr13 104467035 104467086 -15277812 + MIR SINE MIR 96 147 -61 279 0 0 0 chr13 104469644 104469675 -15275223 + (CA)n Simple_repeat Simple_repeat 2 32 0 240 35 0 0 chr13 104471273 104471302 -15273596 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2198 99 18 0 chr13 104471304 104471586 -15273312 - AluSq SINE Alu -26 287 1 27 0 0 0 chr13 104473756 104473783 -15271115 + AT_rich Low_complexity Low_complexity 1 27 0 2159 108 35 0 chr13 104473792 104474079 -15270819 + AluSx SINE Alu 1 297 -15 1984 111 25 56 chr13 104475429 104475484 -15269414 + THE1C LTR MaLR 1 56 -319 2400 87 7 7 chr13 104475484 104475793 -15269105 + AluSp SINE Alu 1 309 -4 1984 111 25 56 chr13 104475793 104476096 -15268802 + THE1C LTR MaLR 56 348 -27 588 170 41 54 chr13 104476362 104476509 -15268389 + MER74B LTR ERVL 58 202 -420 1154 194 120 19 chr13 104476666 104476990 -15267908 + MER74A LTR ERVL 199 555 -3 198 321 134 19 chr13 104477032 104477241 -15267657 + L2 LINE L2 2231 2463 -851 200 356 134 0 chr13 104477282 104477431 -15267467 + L2 LINE L2 3128 3296 -17 279 0 0 0 chr13 104477666 104477697 -15267201 + (CA)n Simple_repeat Simple_repeat 1 31 0 1542 219 65 20 chr13 104478678 104479125 -15265773 + MLT1C LTR MaLR 1 467 0 1632 173 6 20 chr13 104479276 104479592 -15265306 + MLT2C2 LTR ERVL 1 378 -86 245 109 22 0 chr13 104479620 104479666 -15265232 + (TG)n Simple_repeat Simple_repeat 2 48 0 727 175 35 29 chr13 104479805 104479976 -15264922 + MER5B DNA MER1_type 4 175 -3 426 233 187 13 chr13 104480055 104480205 -15264693 + MER5A DNA MER1_type 9 184 -5 315 350 145 15 chr13 104480379 104480579 -15264319 + MIR SINE MIR 25 250 -12 1276 199 63 147 chr13 104480697 104481254 -15263644 + MER67D LTR ERV1 1 510 -4 20078 47 8 1 chr13 104482302 104485700 -15259198 + L1PA6 LINE L1 2744 6149 -5 287 207 124 78 chr13 104485720 104485940 -15258958 - MER5B DNA MER1_type 0 189 1 185 232 89 0 chr13 104486152 104486208 -15258690 - MIR SINE MIR -84 178 118 1679 157 165 0 chr13 104486260 104486624 -15258274 - MSTB LTR MaLR 0 426 3 2205 228 52 88 chr13 104487567 104488353 -15256545 - MER21B LTR ERV1 -105 758 1 2280 100 7 3 chr13 104488737 104489046 -15255852 + AluSg SINE Alu 1 310 0 410 182 42 115 chr13 104489663 104489732 -15255166 + MER69A DNA AcHobo 24 96 -2430 2330 80 3 0 chr13 104489732 104490039 -15254859 - AluSq SINE Alu 0 308 1 410 182 42 115 chr13 104490039 104490132 -15254766 + MER69A DNA AcHobo 96 176 -1 249 33 0 0 chr13 104490240 104490270 -15254628 + (GGA)n Simple_repeat Simple_repeat 1 30 0 1270 274 89 10 chr13 104491587 104491977 -15252921 - MLT1G LTR MaLR 0 590 170 2358 164 82 20 chr13 104491977 104492466 -15252432 + MER74A LTR ERVL 1 519 -39 972 145 0 0 chr13 104492479 104492617 -15252281 - AluSx SINE Alu -12 300 163 523 92 218 0 chr13 104492617 104492704 -15252194 - AluSx SINE Alu -202 111 6 476 210 5 124 chr13 104492744 104492912 -15251986 - MLT1G LTR MaLR -416 174 28 2275 121 0 10 chr13 104492912 104493226 -15251672 - AluSx SINE Alu -1 311 1 476 210 5 124 chr13 104493226 104493243 -15251655 - MLT1G LTR MaLR -562 28 11 1382 249 25 6 chr13 104493245 104493599 -15251299 - L1ME3A LINE L1 -21 6149 5789 851 151 7 7 chr13 104493614 104493753 -15251145 - MER74A LTR ERVL -419 139 1 * 1247 281 89 10 chr13 104493753 104494143 -15250755 + MLT1G LTR MaLR 170 590 0 26 30 0 0 chr13 104494714 104494747 -15250151 + AT_rich Low_complexity Low_complexity 1 33 0 2473 67 0 7 chr13 104494749 104495046 -15249852 + AluY SINE Alu 1 295 -16 600 200 30 15 chr13 104495431 104495566 -15249332 - MER5B DNA MER1_type -15 163 27 207 289 109 47 chr13 104495614 104495742 -15249156 - L3 LINE CR1 -716 861 726 1190 198 59 26 chr13 104495935 104496274 -15248624 + L1MB8 LINE L1 5796 6145 -33 262 172 22 72 chr13 104496619 104496799 -15248099 + C-rich Low_complexity Low_complexity 2 172 0 462 340 7 0 chr13 104496800 104496950 -15247948 + CT-rich Low_complexity Low_complexity 4 154 0 352 186 16 55 chr13 104497086 104497269 -15247629 + C-rich Low_complexity Low_complexity 2 177 0 218 269 250 0 chr13 104498628 104498732 -15246166 + MIR3 SINE MIR 30 159 -49 442 243 53 53 chr13 104498755 104498907 -15245991 + MER112 DNA MER1_type 69 220 -40 2061 135 7 14 chr13 104498960 104499256 -15245642 - AluJb SINE Alu -18 294 1 22 94 0 0 chr13 104499412 104499476 -15245422 + AT_rich Low_complexity Low_complexity 1 64 0 703 233 33 103 chr13 104499484 104499664 -15245234 + L1ME3A LINE L1 5582 5734 -436 1696 184 10 3 chr13 104499664 104499952 -15244946 + AluJb SINE Alu 23 312 0 703 233 33 103 chr13 104499952 104500072 -15244826 + L1ME3A LINE L1 5734 5861 -309 230 222 16 32 chr13 104500073 104500136 -15244762 + LTR48B LTR ERV1 1 62 -582 460 222 0 0 chr13 104500152 104500242 -15244656 + MER39 LTR ERV1 266 355 -352 2193 124 10 10 chr13 104500242 104500548 -15244350 + AluSx SINE Alu 1 306 -6 468 277 26 70 chr13 104500549 104500906 -15243992 - MER39 LTR ERV1 -144 563 1 285 325 26 0 chr13 104501636 104501753 -15243145 + MIR3 SINE MIR 78 197 -11 268 220 85 68 chr13 104502214 104502332 -15242566 - L2 LINE L2 -213 3059 2940 446 283 30 60 chr13 104502742 104502767 -15242131 + MLT1I LTR MaLR 49 73 -336 2545 76 0 0 chr13 104502767 104503069 -15241829 - AluSx SINE Alu -6 306 5 446 283 30 60 chr13 104503069 104503209 -15241689 + MLT1I LTR MaLR 73 209 -200 452 230 158 7 chr13 104503981 104504120 -15240778 + MIR SINE MIR 86 245 -17 1263 261 73 45 chr13 104504474 104504627 -15240271 - Charlie4a DNA MER1_type -1456 505 358 1928 155 10 7 chr13 104504627 104504918 -15239980 - AluJo SINE Alu -20 292 1 1263 261 73 45 chr13 104504918 104505227 -15239671 - Charlie4a DNA MER1_type -1603 358 30 379 233 7 23 chr13 104508701 104509003 -15235895 + (TG)n Simple_repeat Simple_repeat 1 297 0 239 210 0 12 chr13 104509039 104509120 -15235778 + (TG)n Simple_repeat Simple_repeat 2 81 0 243 346 15 7 chr13 104509136 104509272 -15235626 + (TG)n Simple_repeat Simple_repeat 2 138 0 1132 226 139 10 chr13 104509415 104509817 -15235081 - L1MC4a LINE L1 -459 7349 6896 1887 107 91 108 chr13 104509819 104510236 -15234662 - LTR14B LTR ERVK 0 608 1 2158 201 52 86 chr13 104510239 104510740 -15234158 - L1MC4a LINE L1 -909 6899 6425 357 24 0 0 chr13 104510740 104510782 -15234116 + (TG)n Simple_repeat Simple_repeat 2 43 0 2158 201 52 86 chr13 104510782 104510957 -15233941 - L1MC4a LINE L1 -1383 6425 6246 303 212 11 123 chr13 104510977 104511107 -15233791 - L1MC4a LINE L1 -1791 6017 5911 183 80 0 0 chr13 104511107 104511132 -15233766 + (TA)n Simple_repeat Simple_repeat 2 26 0 303 212 11 123 chr13 104511132 104511180 -15233718 - L1MC4a LINE L1 -1897 5911 5859 1671 104 0 5 chr13 104511353 104511573 -15233325 - AluSg/x SINE Alu 0 312 94 33 0 0 42 chr13 104561755 104561773 -15183125 + AT_rich Low_complexity Low_complexity 1 18 -28 2214 99 0 14 chr13 104561773 104562067 -15182831 + AluSg SINE Alu 1 290 -20 33 0 0 42 chr13 104562067 104562096 -15182802 + AT_rich Low_complexity Low_complexity 18 46 0 24 32 0 0 chr13 104562136 104562167 -15182731 + AT_rich Low_complexity Low_complexity 1 31 0 651 187 18 24 chr13 104562482 104562809 -15182089 + GA-rich Low_complexity Low_complexity 1 325 0 1709 198 3 0 chr13 104563410 104563713 -15181185 + AluJo SINE Alu 1 304 -8 25 51 0 0 chr13 104563732 104563771 -15181127 + AT_rich Low_complexity Low_complexity 1 39 0 624 146 0 0 chr13 104563923 104564012 -15180886 + AluS SINE Alu 2 90 -222 2515 80 0 3 chr13 104565569 104565881 -15179017 + AluSx SINE Alu 1 311 -1 230 226 48 16 chr13 104566477 104566539 -15178359 + MIR SINE MIR 91 154 -108 21 36 0 0 chr13 104567354 104567382 -15177516 + AT_rich Low_complexity Low_complexity 1 28 0 2311 106 0 7 chr13 104567404 104567706 -15177192 - AluSq SINE Alu -13 300 1 387 296 15 37 chr13 104569373 104569508 -15175390 - MIR SINE MIR -128 134 3 534 178 22 0 chr13 104569612 104569702 -15175196 - AluJ/FRAM SINE Alu -7 305 214 404 641 0 0 chr13 104570656 104570812 -15174086 + (CA)n Simple_repeat Simple_repeat 2 157 0 2437 164 21 17 chr13 104570878 104571298 -15173600 - MSTA LTR MaLR 0 428 7 7130 179 40 11 chr13 104571298 104572747 -15172151 - MSTA-int LTR MaLR -25 1555 1 2589 138 32 2 chr13 104572749 104573156 -15171742 - MSTA LTR MaLR -2 426 8 337 295 16 8 chr13 104574730 104574852 -15170046 - MER51A-int LTR ERV1 -3884 996 874 1585 205 41 124 chr13 104574984 104575085 -15169813 - MER51A-int LTR ERV1 -7007 809 701 7525 111 11 23 chr13 104575085 104576169 -15168729 - MER11C LTR ERVK 0 1071 1 1585 205 41 124 chr13 104576169 104576681 -15168217 - MER51A-int LTR ERV1 -7115 701 247 1282 178 25 62 chr13 104576694 104576969 -15167929 - MER51A-int LTR ERV1 -7548 268 4 1580 120 148 77 chr13 104576986 104577311 -15167587 - MER51A LTR ERV1 -8 626 279 1358 289 42 7 chr13 104577310 104577781 -15167117 - MER51A LTR ERV1 -28 612 3 * 667 161 0 0 chr13 104577877 104577989 -15166909 - MER53 DNA DNA -76 113 2 2106 127 13 0 chr13 104578074 104578373 -15166525 + AluSc SINE Alu 1 303 -6 2036 104 10 27 chr13 104578424 104578722 -15166176 + AluSq SINE Alu 1 293 -20 1074 187 40 4 chr13 104578722 104578947 -15165951 - L1MB3 LINE L1 -9 6174 5942 216 241 113 98 chr13 104579609 104579742 -15165156 + MIR3 SINE MIR 53 187 -21 210 324 15 66 chr13 104579825 104579961 -15164937 - L2 LINE L2 -54 3218 3090 415 172 15 97 chr13 104580401 104580492 -15164406 + MER53 DNA DNA 56 134 -55 2254 122 0 3 chr13 104580492 104580803 -15164095 - AluSx SINE Alu 0 312 3 415 172 15 97 chr13 104580803 104580845 -15164053 + MER53 DNA DNA 134 178 -11 2101 134 0 3 chr13 104581756 104582055 -15162843 - AluSg SINE Alu -12 298 1 245 215 0 13 chr13 104582381 104582460 -15162438 + (TA)n Simple_repeat Simple_repeat 2 79 0 433 224 20 0 chr13 104582466 104582564 -15162334 - L1MC5 LINE L1 -32 7929 7830 1824 229 194 46 chr13 104582600 104583294 -15161604 - L1ME3 LINE L1 -8 6154 5358 596 244 57 16 chr13 104583615 104583808 -15161090 - L1MB8 LINE L1 -43 6135 5935 2877 188 34 16 chr13 104583989 104584553 -15160345 - MER90 LTR ERV1 0 575 2 278 180 49 0 chr13 104584823 104584884 -15160014 + L1M4 LINE L1 5223 5286 -860 2208 123 0 0 chr13 104585244 104585545 -15159353 - AluSx SINE Alu -11 301 1 1223 211 68 100 chr13 104585624 104585659 -15159239 - MER34 LTR ERV1 0 542 507 2356 76 0 10 chr13 104585659 104585961 -15158937 - AluY SINE Alu -12 299 1 1223 211 68 100 chr13 104585961 104586483 -15158415 - MER34 LTR ERV1 -35 507 3 2785 106 33 36 chr13 104586617 104587328 -15157570 - MER51A LTR ERV1 0 634 1 2118 166 3 0 chr13 104587330 104587661 -15157237 - MER51A-int LTR ERV1 -1 7815 7484 1649 298 40 42 chr13 104587833 104588902 -15155996 - PRIMA41-int LTR ERV1 -1621 6135 4621 999 296 36 74 chr13 104589213 104590108 -15154790 - PRIMA41-int LTR ERV1 -1315 3639 2779 6858 56 10 0 chr13 104590362 104591231 -15153667 + L1PA8 LINE L1 5307 6183 0 336 323 30 35 chr13 104591245 104591446 -15153452 - PRIMA41-int LTR ERV1 -4895 2861 2662 568 291 15 50 chr13 104591719 104592056 -15152842 - PRIMA41-int LTR ERV1 -4010 2666 2342 1635 136 8 38 chr13 104593189 104593454 -15151444 - Tigger3(Golem) DNA MER2_type -5 3024 2768 2143 106 0 37 chr13 104593455 104593776 -15151122 + AluSg SINE Alu 1 309 -1 234 274 33 59 chr13 104593858 104594011 -15150887 + L1MC/D LINE L1 5762 5910 -1898 1523 112 0 0 chr13 104594810 104595016 -15149882 - AluSq SINE Alu -107 206 1 1790 159 3 20 chr13 104595236 104595537 -15149361 - AluJo SINE Alu -12 300 5 7507 52 35 3 chr13 104595816 104596686 -15148212 + MER11D LTR ERVK 1 897 0 2075 152 17 77 chr13 104596849 104597264 -15147634 + MLT1B LTR MaLR 1 390 0 953 160 13 6 chr13 104597275 104597431 -15147467 + AluJb SINE Alu 130 286 -26 2291 109 0 0 chr13 104597760 104598062 -15146836 - AluSq SINE Alu -11 302 1 730 263 34 6 chr13 104598214 104598389 -15146509 - MIR SINE MIR -70 192 13 717 230 26 137 chr13 104598980 104599063 -15145835 - MIR SINE MIR -21 241 150 2300 101 3 0 chr13 104599063 104599360 -15145538 - AluSx SINE Alu -14 298 1 717 230 26 137 chr13 104599360 104599546 -15145352 - MIR SINE MIR -112 150 2 28 0 0 0 chr13 104600428 104600456 -15144442 + AT_rich Low_complexity Low_complexity 1 28 0 1659 165 3 40 chr13 104600456 104600753 -15144145 - AluJo SINE Alu -26 286 1 475 203 60 122 chr13 104601310 104601434 -15143464 - L1MC4a LINE L1 -91 6030 5900 2055 148 3 0 chr13 104601434 104601738 -15143160 - AluSx SINE Alu -7 305 1 475 203 60 122 chr13 104601738 104601926 -15142972 - L1MC4a LINE L1 -221 5900 5736 1723 171 0 54 chr13 104601926 104602241 -15142657 - AluJb SINE Alu -14 298 1 475 203 60 122 chr13 104602241 104602311 -15142587 - L1MC4a LINE L1 -385 5736 5663 1681 189 0 26 chr13 104604181 104604487 -15140411 - AluJo SINE Alu -5 307 10 2196 134 0 0 chr13 104604506 104604804 -15140094 - AluSx SINE Alu -14 298 1 1537 169 58 0 chr13 104605673 104605934 -15138964 - AluJo SINE Alu -36 276 1 1707 219 140 143 chr13 104606132 104607216 -15137682 - L2 LINE L2 0 3313 2097 912 86 0 9 chr13 104607216 104607332 -15137566 - AluSq/x SINE Alu -182 130 16 1707 219 140 143 chr13 104607332 104607718 -15137180 - L2 LINE L2 -1216 2097 1711 1702 154 37 0 chr13 104607719 104608017 -15136881 - AluSx SINE Alu 0 308 1 1824 143 3 10 chr13 104608037 104608337 -15136561 - AluY SINE Alu -10 301 4 283 151 116 12 chr13 104608380 104608466 -15136432 + MER96B DNA MER1_type? 82 176 -241 642 248 188 8 chr13 104608710 104608944 -15135954 - L2 LINE L2 -2944 370 95 2401 126 19 19 chr13 104608961 104609335 -15135563 - THE1C LTR MaLR -1 374 1 432 313 109 14 chr13 104609464 104609675 -15135223 - MIR SINE MIR 0 262 32 507 237 268 10 chr13 104609950 104610148 -15134750 + MIR SINE MIR 14 262 0 649 284 120 46 chr13 104610160 104610576 -15134322 - Tigger8 DNA MER2_type -200 466 20 216 67 0 0 chr13 104611688 104611718 -15133180 + (T)n Simple_repeat Simple_repeat 1 30 0 564 26 316 0 chr13 104611718 104611794 -15133104 - HY3 scRNA scRNA -1 100 1 22 0 0 0 chr13 104612832 104612854 -15132044 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 104613760 104613789 -15131109 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 104613882 104613910 -15130988 + AT_rich Low_complexity Low_complexity 1 28 0 973 175 41 31 chr13 104613910 104614043 -15130855 + AluJo SINE Alu 1 138 -174 1589 170 101 0 chr13 104614043 104614320 -15130578 + AluJo SINE Alu 2 306 -6 973 175 41 31 chr13 104614320 104614380 -15130518 + AluJo SINE Alu 138 196 -116 492 236 167 35 chr13 104616101 104616275 -15128623 + MIR SINE MIR 47 243 -19 207 0 0 0 chr13 104616974 104616997 -15127901 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2350 88 3 3 chr13 104617068 104617374 -15127524 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr13 104617916 104617945 -15126953 + AT_rich Low_complexity Low_complexity 1 29 0 1028 275 126 28 chr13 104618033 104618633 -15126265 + L2 LINE L2 2633 3298 -15 2083 107 31 7 chr13 104619270 104619561 -15125337 + AluSg SINE Alu 1 298 -12 24 32 0 0 chr13 104620095 104620126 -15124772 + AT_rich Low_complexity Low_complexity 1 31 0 2254 113 0 0 chr13 104620454 104620756 -15124142 - AluSc SINE Alu -7 302 1 321 264 144 24 chr13 104624285 104624452 -15120446 - MIR SINE MIR -75 187 1 268 254 0 0 chr13 104624485 104624540 -15120358 + L3b LINE CR1 1515 1569 -14 23 0 0 0 chr13 104625166 104625189 -15119709 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr13 104625427 104625467 -15119431 + AT_rich Low_complexity Low_complexity 1 40 0 4486 184 41 39 chr13 104625687 104626029 -15118869 - L1MB5 LINE L1 -6 6168 5828 2479 71 0 10 chr13 104626029 104626340 -15118558 - AluY SINE Alu -3 308 1 4486 184 41 39 chr13 104626340 104627053 -15117845 - L1MB5 LINE L1 -346 5828 5118 1621 140 87 23 chr13 104627053 104627318 -15117580 + AluJo SINE Alu 1 282 -30 4486 184 41 39 chr13 104627318 104628149 -15116749 - L1MB5 LINE L1 -1056 5118 4287 232 272 44 59 chr13 104628297 104628433 -15116465 - MIR SINE MIR -67 195 62 25 51 0 0 chr13 104629650 104629689 -15115209 + AT_rich Low_complexity Low_complexity 1 39 0 2447 74 3 0 chr13 104630350 104630647 -15114251 - AluSp SINE Alu -15 298 1 267 320 0 13 chr13 104631173 104631248 -15113650 + G-rich Low_complexity Low_complexity 1 74 0 1929 237 56 16 chr13 104631370 104631867 -15113031 - L1ME1 LINE L1 -76 6090 5574 1099 110 121 0 chr13 104631898 104632068 -15112830 + MSTA LTR MaLR 1 191 -237 606 122 20 20 chr13 104632068 104632166 -15112732 + MER4A LTR ERV1 1 98 -566 1844 152 3 22 chr13 104632166 104632514 -15112384 + MER4A LTR ERV1 263 662 -2 4599 103 236 72 chr13 104632519 104633512 -15111386 + MER4A-int LTR ERV1 1 1155 -5443 1128 136 0 3 chr13 104633516 104633912 -15110986 + (TG)n Simple_repeat Simple_repeat 2 572 0 248 357 31 39 chr13 104634746 104634875 -15110023 + L2 LINE L2 3117 3244 -28 28 29 0 0 chr13 104635485 104635520 -15109378 + AT_rich Low_complexity Low_complexity 1 35 0 2406 81 3 0 chr13 104635665 104635962 -15108936 - AluSp SINE Alu -15 298 1 1805 172 0 3 chr13 104636064 104636366 -15108532 - AluJo SINE Alu -11 301 1 1013 88 0 22 chr13 104636368 104636504 -15108394 - AluJo/FLAM SINE Alu -169 133 1 2355 81 3 0 chr13 104636878 104637176 -15107722 + AluSp SINE Alu 1 299 -14 180 77 0 0 chr13 104637617 104637643 -15107255 + (TTAGGG)n Simple_repeat Simple_repeat 2 27 0 2146 85 14 14 chr13 104638705 104638999 -15105899 - AluSx SINE Alu -18 294 1 231 88 118 0 chr13 104639201 104639235 -15105663 + Alu SINE Alu 77 114 -188 204 125 0 0 chr13 104639817 104639849 -15105049 + (T)n Simple_repeat Simple_repeat 1 32 0 1918 161 0 0 chr13 104639893 104640172 -15104726 + AluJo SINE Alu 1 279 -33 1559 207 119 12 chr13 104640385 104640796 -15104102 + MLT1C LTR MaLR 13 467 0 558 186 73 0 chr13 104641436 104641560 -15103338 + MER5A DNA MER1_type 41 173 -16 234 105 0 0 chr13 104641741 104641779 -15103119 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 540 250 104 42 chr13 104642704 104642765 -15102133 - MIR SINE MIR -6 256 200 1814 142 14 4 chr13 104642765 104643091 -15101807 - AluJo SINE Alu 0 330 2 540 250 104 42 chr13 104643091 104643219 -15101679 - MIR SINE MIR -62 200 53 440 152 4 77 chr13 104643562 104643666 -15101232 - LTR50 LTR ERVL 0 795 679 294 53 0 0 chr13 104643674 104643712 -15101186 - MLT2B1 LTR ERVL -11 509 472 1455 214 196 8 chr13 104643800 104644202 -15100696 - MLT2B1 LTR ERVL -41 479 2 830 156 0 0 chr13 104644404 104644532 -15100366 + FLAM_C SINE Alu 4 131 -12 856 159 0 0 chr13 104644636 104644762 -15100136 + AluJb SINE Alu 160 285 -27 1963 135 0 10 chr13 104645624 104645942 -15098956 - AluSx SINE Alu 0 315 1 2142 103 34 0 chr13 104645971 104646262 -15098636 - AluSp SINE Alu -12 301 1 452 211 54 90 chr13 104646452 104646618 -15098280 - LTR41 LTR ERVL -118 655 496 664 222 17 17 chr13 104646774 104646954 -15097944 - LTR41 LTR ERVL -589 184 5 1614 133 24 4 chr13 104646999 104647254 -15097644 + L1PA16 LINE L1 5829 6088 -78 261 61 0 0 chr13 104647249 104647282 -15097616 - L1P4 LINE L1 -312 5854 5822 * 232 143 0 0 chr13 104647288 104647330 -15097568 - LTR66 LTR ERVL -171 439 398 * 250 111 0 0 chr13 104647295 104647340 -15097558 + LTR66 LTR ERVL 395 439 -171 1572 124 29 12 chr13 104647343 104647584 -15097314 - AluSx SINE Alu -20 292 48 1135 112 12 0 chr13 104647584 104647753 -15097145 - L1P4 LINE L1 -414 5752 5582 1968 54 0 25 chr13 104648237 104648476 -15096422 - AluSp SINE Alu -12 301 69 542 60 0 170 chr13 104648476 104648572 -15096326 - AluSp SINE Alu -166 147 69 1470 174 15 8 chr13 104648738 104648997 -15095901 - AluJb SINE Alu -11 301 41 772 286 71 64 chr13 104649021 104649413 -15095485 - MLT1K LTR MaLR -6 582 188 204 326 54 8 chr13 104649546 104649675 -15095223 - MIR SINE MIR -125 137 3 1957 143 0 0 chr13 104650011 104650297 -15094601 + AluSx SINE Alu 1 286 -26 28 0 0 0 chr13 104650297 104650325 -15094573 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chr13 104651483 104651507 -15093391 + (GAA)n Simple_repeat Simple_repeat 2 25 0 2173 51 36 14 chr13 104651963 104652238 -15092660 + AluY SINE Alu 1 281 -30 186 43 0 0 chr13 104652241 104652264 -15092634 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1327 180 9 0 chr13 104652266 104652483 -15092415 + Tigger3(Golem) DNA MER2_type 2820 3038 0 340 165 15 143 chr13 104652483 104652514 -15092384 - L1MC4 LINE L1 -14 8028 7995 2134 123 3 0 chr13 104652514 104652815 -15092083 + AluSx SINE Alu 1 302 -10 340 165 15 143 chr13 104652815 104652916 -15091982 - L1MC4 LINE L1 -47 7995 7913 871 270 55 10 chr13 104652999 104653288 -15091610 - L1MC4 LINE L1 -120 7922 7621 2244 103 0 34 chr13 104655092 104655412 -15089486 - AluSg SINE Alu -1 309 1 252 296 37 0 chr13 104655498 104655579 -15089319 - L2 LINE L2 -27 3286 3203 22 0 0 0 chr13 104656011 104656033 -15088865 + GC_rich Low_complexity Low_complexity 1 22 0 2139 101 11 0 chr13 104656332 104656634 -15088264 - AluSx SINE Alu 0 305 1 1736 217 32 45 chr13 104656642 104656852 -15088046 - MSTD LTR MaLR 0 396 192 1511 165 46 28 chr13 104656852 104657137 -15087761 - AluJb SINE Alu -22 290 1 1736 217 32 45 chr13 104657137 104657327 -15087571 - MSTD LTR MaLR -204 192 1 1603 170 11 4 chr13 104657884 104658154 -15086744 + AluJo SINE Alu 27 298 -14 909 156 0 15 chr13 104658204 104658339 -15086559 - FLAM_A SINE Alu 0 133 1 270 359 48 0 chr13 104658483 104658586 -15086312 - L2 LINE L2 -8 3264 3157 1846 177 38 8 chr13 104659594 104659961 -15084937 + L1MB3 LINE L1 5805 6182 -1 1294 82 0 12 chr13 104659968 104660280 -15084618 + AluSq SINE Alu 1 310 0 685 245 71 40 chr13 104660287 104660610 -15084288 - L1MC4a LINE L1 -1847 5961 5629 1836 149 82 25 chr13 104660611 104660966 -15083932 + THE1C LTR MaLR 1 375 0 2291 88 0 3 chr13 104661022 104661328 -15083570 - AluY SINE Alu -6 305 1 24 32 0 0 chr13 104661474 104661505 -15083393 + AT_rich Low_complexity Low_complexity 1 31 0 513 228 15 89 chr13 104661712 104661914 -15082984 - L2 LINE L2 -2 3311 3125 24 32 0 0 chr13 104661948 104661979 -15082919 + AT_rich Low_complexity Low_complexity 1 31 0 1433 140 26 8 chr13 104661979 104662243 -15082655 - L1PA13 LINE L1 -8 6155 5887 728 194 0 7 chr13 104662479 104662623 -15082275 + AluSp/q SINE Alu 171 313 0 2289 88 0 3 chr13 104663613 104663910 -15080988 - AluSq SINE Alu -17 296 1 4053 111 9 13 chr13 104663911 104664273 -15080625 - L1PA13 LINE L1 -335 5828 5466 2124 119 0 0 chr13 104664273 104664575 -15080323 - AluSx SINE Alu -10 302 1 4053 111 9 13 chr13 104664575 104665047 -15079851 - L1PA13 LINE L1 -697 5466 4999 29 0 0 0 chr13 104665261 104665290 -15079608 + AT_rich Low_complexity Low_complexity 1 29 0 801 144 0 0 chr13 104665290 104665408 -15079490 - FLAM_C SINE Alu -25 118 1 956 172 47 0 chr13 104665441 104665610 -15079288 - MLT1D LTR MaLR -328 177 1 482 285 77 41 chr13 104665791 104666012 -15078886 - L2 LINE L2 -8 3305 3077 245 284 27 0 chr13 104666093 104666167 -15078731 - MIR3 SINE MIR -23 185 110 810 191 48 7 chr13 104667145 104667292 -15077606 + FRAM SINE Alu 1 153 -13 1218 238 55 58 chr13 104667321 104667441 -15077457 + MER39 LTR ERV1 1 120 -587 2202 100 0 7 chr13 104667441 104667742 -15077156 - AluSx SINE Alu -12 300 2 1218 238 55 58 chr13 104667742 104668117 -15076781 + MER39 LTR ERV1 120 696 -11 1788 146 55 25 chr13 104668389 104668753 -15076145 + THE1C LTR MaLR 1 375 0 2159 81 0 0 chr13 104669090 104669385 -15075513 - AluSx SINE Alu 0 305 11 327 87 0 0 chr13 104669766 104669812 -15075086 + MADE1 DNA Mariner 1 46 -34 430 273 10 0 chr13 104669814 104669913 -15074985 + L2 LINE L2 3197 3296 -17 405 91 0 0 chr13 104669924 104669979 -15074919 + MADE1 DNA Mariner 26 80 0 348 298 112 37 chr13 104670083 104670360 -15074538 - L2 LINE L2 -226 3046 2716 553 201 103 67 chr13 104670376 104670570 -15074328 - MIR SINE MIR -3 259 59 239 246 149 26 chr13 104670568 104670682 -15074216 - L2 LINE L2 -596 2718 2591 * 269 206 34 56 chr13 104670684 104670756 -15074142 - MER96B DNA MER1_type? 0 408 120 473 48 0 0 chr13 104670757 104670820 -15074078 + AluY SINE Alu 240 302 -7 664 148 40 34 chr13 104670820 104670831 -15074067 + MER96B DNA MER1_type? 86 95 -322 1871 130 7 20 chr13 104670831 104671131 -15073767 + AluSx SINE Alu 1 296 -16 664 148 40 34 chr13 104671131 104671268 -15073630 + MER96B DNA MER1_type? 95 235 -182 193 146 0 55 chr13 104672252 104672307 -15072591 + (CGGGG)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr13 104672510 104672532 -15072366 + GC_rich Low_complexity Low_complexity 1 22 0 1128 167 215 28 chr13 104672800 104673153 -15071745 - Charlie1 DNA MER1_type 0 2761 2343 419 151 0 27 chr13 104673151 104673224 -15071674 - Charlie1 DNA MER1_type -2690 71 1 * 301 311 110 30 chr13 104673256 104673420 -15071478 - MIR SINE MIR -59 203 27 2052 126 0 0 chr13 104673424 104673733 -15071165 - AluSx SINE Alu -3 309 1 2312 87 0 3 chr13 104673747 104674059 -15070839 - AluSq SINE Alu -2 311 1 3479 182 141 39 chr13 104674395 104674852 -15070046 - L1M4c LINE L1 -4755 1891 1482 2367 87 0 0 chr13 104674852 104675161 -15069737 - AluSc SINE Alu 0 309 1 3479 182 141 39 chr13 104675161 104675228 -15069670 - L1M4c LINE L1 -5164 1482 1423 1563 184 10 7 chr13 104675228 104675522 -15069376 - AluJb SINE Alu -17 295 1 3479 182 141 39 chr13 104675522 104675598 -15069300 - L1M4c LINE L1 -5223 1423 1356 1529 185 42 0 chr13 104675598 104675885 -15069013 - AluJo SINE Alu -11 301 3 3479 182 141 39 chr13 104675885 104676343 -15068555 - L1M4c LINE L1 -5290 1356 746 2885 229 76 15 chr13 104676344 104677018 -15067880 - L1M4c LINE L1 -5820 722 8 1599 244 104 9 chr13 104677031 104677605 -15067293 - L1M4 LINE L1 -2187 3959 3331 317 268 123 62 chr13 104677606 104677785 -15067113 - L1MB7 LINE L1 -11 6173 5984 * 774 205 90 6 chr13 104677780 104678072 -15066826 - L1M4 LINE L1 -2796 3350 3034 1862 164 0 0 chr13 104678072 104678370 -15066528 - AluJb SINE Alu -10 302 5 1365 220 0 11 chr13 104678416 104678698 -15066200 + AluJo SINE Alu 1 279 -33 363 78 0 0 chr13 104678698 104678749 -15066149 + (TAA)n Simple_repeat Simple_repeat 1 51 0 219 342 9 27 chr13 104679232 104679343 -15065555 + GA-rich Low_complexity Low_complexity 4 112 0 358 315 18 0 chr13 104679617 104679728 -15065170 - MER81 DNA DNA -1 113 1 24 67 0 0 chr13 104681095 104681140 -15063758 + AT_rich Low_complexity Low_complexity 1 45 0 201 121 0 0 chr13 104681418 104681451 -15063447 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 2072 108 0 41 chr13 104681510 104681824 -15063074 - AluSg SINE Alu -9 301 1 810 212 41 12 chr13 104681832 104682002 -15062896 - FAM SINE Alu 0 175 1 2063 109 0 3 chr13 104682353 104682673 -15062225 + AluSx SINE Alu 1 319 0 617 307 57 57 chr13 104683541 104683857 -15061041 + L2 LINE L2 2997 3312 -1 2590 139 16 29 chr13 104683911 104683958 -15060940 - L1MB3 LINE L1 0 6183 6137 2154 68 10 3 chr13 104683958 104684250 -15060648 - AluSx SINE Alu -18 294 1 2590 139 16 29 chr13 104684250 104684692 -15060206 - L1MB3 LINE L1 -46 6137 5700 1676 169 30 51 chr13 104684779 104685152 -15059746 + MLT1A1 LTR MaLR 1 365 0 251 256 131 22 chr13 104685341 104685478 -15059420 + MIR3 SINE MIR 51 202 -6 2075 114 7 7 chr13 104686177 104686545 -15058353 + AluSg SINE Alu 3 370 0 1835 208 37 51 chr13 104687275 104687332 -15057566 - MLT1D LTR MaLR 0 505 449 1280 139 69 9 chr13 104687332 104687548 -15057350 - MER30 DNA MER1_type -1 229 1 1835 208 37 51 chr13 104687548 104687999 -15056899 - MLT1D LTR MaLR -56 449 4 209 321 60 0 chr13 104688108 104688192 -15056706 + L2 LINE L2 2496 2584 -730 1005 175 21 10 chr13 104688247 104688441 -15056457 - L1MB5 LINE L1 -42 6132 5937 282 153 0 97 chr13 104688469 104688541 -15056357 - Alu SINE Alu 0 302 238 840 161 0 7 chr13 104688542 104688679 -15056219 - FRAM SINE Alu -48 128 1 1993 128 62 0 chr13 104688682 104689002 -15055896 - L1MB5 LINE L1 -406 5768 5429 351 314 100 21 chr13 104689014 104689253 -15055645 + L2 LINE L2 2698 2955 -359 2162 99 7 0 chr13 104689358 104689652 -15055246 + AluY SINE Alu 5 300 -11 367 205 250 9 chr13 104689886 104689998 -15054900 + L2 LINE L2 3134 3272 0 21 36 0 0 chr13 104693898 104693926 -15050972 + AT_rich Low_complexity Low_complexity 1 28 0 521 290 190 0 chr13 104696456 104696656 -15048242 - MIR SINE MIR -20 242 5 1863 137 0 0 chr13 104696729 104697013 -15047885 + AluJb SINE Alu 3 286 -26 279 0 0 0 chr13 104697019 104697050 -15047848 + (TG)n Simple_repeat Simple_repeat 2 32 0 2128 58 3 58 chr13 104697194 104697502 -15047396 - AluSc SINE Alu -18 291 1 1117 278 83 60 chr13 104697519 104698061 -15046837 + L1ME LINE L1 394 922 -5460 2136 113 3 10 chr13 104698061 104698372 -15046526 + AluSx SINE Alu 1 309 -3 1117 278 83 60 chr13 104698372 104698560 -15046338 + L1ME LINE L1 922 1104 -5278 1617 135 110 3 chr13 104698560 104698842 -15046056 + AluSx SINE Alu 1 312 0 1117 278 83 60 chr13 104698842 104698859 -15046039 + L1ME LINE L1 1104 1119 -5263 2007 126 17 0 chr13 104698859 104699153 -15045745 + AluSx SINE Alu 1 299 -13 1117 278 83 60 chr13 104699153 104699177 -15045721 + L1ME LINE L1 1119 1154 -5228 622 205 84 0 chr13 104699174 104699340 -15045558 + L1MB5 LINE L1 5966 6145 -29 * 1474 274 99 17 chr13 104699352 104700038 -15044860 + L1ME LINE L1 1140 1929 -4453 23 0 0 0 chr13 104700078 104700101 -15044797 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 104700262 104700288 -15044610 + AT_rich Low_complexity Low_complexity 1 26 0 618 277 77 26 chr13 104701315 104701510 -15043388 + MIR SINE MIR 20 224 -38 49 18 0 0 chr13 104702837 104702893 -15042005 + AT_rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr13 104703098 104703129 -15041769 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 104703701 104703725 -15041173 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 104705199 104705222 -15039676 + (T)n Simple_repeat Simple_repeat 1 23 0 1907 149 0 0 chr13 104705779 104706075 -15038823 + AluJb SINE Alu 1 296 -16 2228 97 7 3 chr13 104706094 104706403 -15038495 + AluSx SINE Alu 1 310 -2 2154 102 0 7 chr13 104706799 104707094 -15037804 - AluSc SINE Alu -16 293 1 2029 120 0 23 chr13 104707703 104708002 -15036896 + AluSx SINE Alu 1 292 -20 1208 134 0 0 chr13 104708004 104708175 -15036723 + FAM SINE Alu 1 171 -4 758 267 136 46 chr13 104708607 104709148 -15035750 + L2 LINE L2 2618 3222 -91 2221 117 0 0 chr13 104709291 104709599 -15035299 + AluSx SINE Alu 1 308 -4 1013 167 0 46 chr13 104709992 104710166 -15034732 - FRAM SINE Alu 0 166 1 1881 141 21 7 chr13 104710287 104710570 -15034328 + AluJb SINE Alu 1 287 -25 7013 113 6 18 chr13 104711106 104711480 -15033418 + L1MA3 LINE L1 5097 5474 -831 2523 66 0 7 chr13 104711480 104711782 -15033116 - AluY SINE Alu -11 300 1 7013 113 6 18 chr13 104711782 104712624 -15032274 + L1MA3 LINE L1 5474 6300 -5 238 132 38 0 chr13 104712712 104712765 -15032133 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1132 178 5 0 chr13 104713364 104713549 -15031349 + AluJb SINE Alu 81 266 -46 207 146 0 0 chr13 104713580 104713621 -15031277 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 1747 176 0 10 chr13 104713624 104713951 -15030947 + AluJb SINE Alu 1 312 0 2227 90 0 30 chr13 104714519 104714820 -15030078 - AluY SINE Alu -19 292 1 1137 75 0 0 chr13 104714820 104714954 -15029944 - AluY SINE Alu -177 134 1 277 204 0 0 chr13 104720234 104720288 -15024610 + MER116 DNA Mariner 1 54 -26 2948 160 28 40 chr13 104720916 104720976 -15023922 - L1MB7 LINE L1 -1 6183 6124 2335 93 7 3 chr13 104720976 104721286 -15023612 - AluY SINE Alu 0 311 1 2948 160 28 40 chr13 104721286 104721832 -15023066 - L1MB7 LINE L1 -60 6124 5584 290 307 61 18 chr13 104721898 104722012 -15022886 + L2 LINE L2 3134 3252 -20 21 36 0 0 chr13 104723804 104723832 -15021066 + AT_rich Low_complexity Low_complexity 1 28 0 1240 190 133 38 chr13 104723950 104724210 -15020688 - MER39 LTR ERV1 -22 685 388 2372 87 7 0 chr13 104724210 104724510 -15020388 - AluSx SINE Alu -8 304 3 1240 190 133 38 chr13 104724510 104724565 -15020333 - MER39 LTR ERV1 -319 388 340 572 175 79 16 chr13 104724565 104724691 -15020207 - MER39 LTR ERV1 -573 134 1 1621 181 51 0 chr13 104724928 104725204 -15019694 - AluJo SINE Alu -16 296 7 889 141 0 40 chr13 104725357 104725506 -15019392 + FLAM_C SINE Alu 1 143 0 199 204 93 0 chr13 104725867 104725921 -15018977 + MIR SINE MIR 124 182 -80 1711 129 97 7 chr13 104726061 104726339 -15018559 - AluSg SINE Alu -7 303 1 1986 131 40 3 chr13 104726339 104726637 -15018261 - AluSx SINE Alu -3 309 1 773 149 0 47 chr13 104726864 104727012 -15017886 - AluSg/x SINE Alu -2 310 170 24 0 0 0 chr13 104727508 104727532 -15017366 + AT_rich Low_complexity Low_complexity 1 24 0 2202 78 3 41 chr13 104729604 104729920 -15014978 + AluSp SINE Alu 1 305 0 2492 56 3 7 chr13 104730760 104731064 -15013834 - AluY SINE Alu -8 303 1 909 204 0 0 chr13 104731119 104731300 -15013598 - AluSx SINE Alu -3 309 129 829 86 29 0 chr13 104731400 104731505 -15013393 - AluSx SINE Alu -182 131 24 202 286 0 0 chr13 104731602 104731651 -15013247 - L2 LINE L2 -7 3306 3258 791 192 6 45 chr13 104731660 104731837 -15013061 - FRAM SINE Alu -6 170 1 2424 83 0 3 chr13 104731905 104732207 -15012691 + AluSq SINE Alu 1 301 -12 332 176 14 27 chr13 104732727 104732801 -15012097 + AluS SINE Alu 1 73 -229 2167 122 3 3 chr13 104732919 104733223 -15011675 - AluSc SINE Alu -5 304 1 1153 169 27 9 chr13 104734320 104734539 -15010359 - AluJo SINE Alu -3 309 87 2168 95 0 14 chr13 104734778 104735093 -15009805 - AluSg SINE Alu 0 311 1 2159 110 17 7 chr13 104735502 104735802 -15009096 - AluSx SINE Alu -9 303 1 202 273 34 23 chr13 104735851 104735939 -15008959 + (TTCA)n Simple_repeat Simple_repeat 3 91 0 617 201 206 19 chr13 104735996 104736205 -15008693 + MIR SINE MIR 11 258 -4 1639 166 176 33 chr13 104736205 104736333 -15008565 + MLT1C LTR MaLR 1 109 -358 2257 103 0 3 chr13 104736333 104736635 -15008263 + AluSg SINE Alu 1 301 -9 1639 166 176 33 chr13 104736635 104736904 -15007994 + MLT1C LTR MaLR 109 455 -12 2436 47 40 3 chr13 104737432 104737732 -15007166 - AluY SINE Alu 0 311 1 2103 108 35 0 chr13 104738401 104738688 -15006210 - AluSq SINE Alu -8 305 9 1744 187 16 43 chr13 104738703 104738922 -15005976 - MLT1A1 LTR MaLR 0 365 142 2508 63 13 0 chr13 104738922 104739223 -15005675 - AluSp SINE Alu -8 305 1 1918 80 76 18 chr13 104739223 104739497 -15005401 - AluSg SINE Alu -4 306 16 1744 187 16 43 chr13 104739497 104739651 -15005247 - MLT1A1 LTR MaLR -221 144 1 1208 246 124 61 chr13 104739876 104740465 -15004433 - HAL1 LINE L1 -592 1915 1282 2293 119 0 3 chr13 104740465 104740775 -15004123 - AluSx SINE Alu -3 309 1 1208 246 124 61 chr13 104740775 104740812 -15004086 - HAL1 LINE L1 -1225 1282 1249 1788 150 14 21 chr13 104740835 104741121 -15003777 - AluJo SINE Alu -28 284 1 853 122 8 0 chr13 104741124 104741247 -15003651 - AluJb SINE Alu -13 299 176 654 291 79 100 chr13 104741247 104741471 -15003427 - HAL1 LINE L1 -1464 1043 816 2230 99 0 0 chr13 104741471 104741787 -15003111 + AluSx SINE Alu 1 316 0 654 291 79 100 chr13 104741787 104741802 -15003096 - HAL1 LINE L1 -1691 816 802 2121 113 0 3 chr13 104741802 104742109 -15002789 + AluSx SINE Alu 1 306 0 654 291 79 100 chr13 104742109 104742563 -15002335 - HAL1 LINE L1 -1705 802 371 1282 153 205 4 chr13 104742563 104742812 -15002086 - AluSc SINE Alu 0 299 1 654 291 79 100 chr13 104742812 104743081 -15001817 - HAL1 LINE L1 -2136 371 98 433 243 13 26 chr13 104743157 104743309 -15001589 - L1MEc LINE L1 -2178 3951 3802 751 119 127 0 chr13 104743332 104743450 -15001448 - FLAM_A SINE Alu 0 133 1 2287 102 26 0 chr13 104743527 104743830 -15001068 - AluSx SINE Alu -1 311 1 1338 82 0 0 chr13 104743925 104744096 -15000802 - AluSp SINE Alu 0 313 143 1882 141 0 0 chr13 104744196 104744473 -15000425 - AluJb SINE Alu -28 284 8 310 274 23 63 chr13 104744574 104744749 -15000149 - L1MEc LINE L1 -2647 3482 3315 799 165 0 0 chr13 104744766 104744899 -14999999 - FLAM_C SINE Alu 0 133 1 195 42 0 0 chr13 104745086 104745110 -14999788 + (A)n Simple_repeat Simple_repeat 1 24 0 240 226 60 36 chr13 104745110 104745194 -14999704 - LTR48 LTR ERV1 -535 252 167 302 309 12 0 chr13 104745194 104745278 -14999620 - MER34 LTR ERV1 -452 90 6 226 236 55 106 chr13 104745308 104745545 -14999353 - L1MEc LINE L1 -3595 2534 2310 2113 102 10 36 chr13 104745567 104745872 -14999026 - AluSp SINE Alu -16 297 1 1657 158 30 24 chr13 104745874 104746171 -14998727 - AluJo SINE Alu -13 299 1 2249 100 0 3 chr13 104746238 104746529 -14998369 - AluSq SINE Alu -23 290 1 388 306 39 17 chr13 104746645 104746825 -14998073 - L1MEc LINE L1 -3852 2277 2094 239 247 43 0 chr13 104746886 104746979 -14997919 + T-rich Low_complexity Low_complexity 4 100 0 280 337 142 12 chr13 104747295 104747633 -14997265 - L1MEc LINE L1 -749 1741 1360 385 291 84 53 chr13 104747757 104747852 -14997046 - L1MEc LINE L1 -5030 1089 998 2306 107 3 3 chr13 104747852 104748160 -14996738 - AluSq SINE Alu -5 308 1 385 291 84 53 chr13 104748160 104748291 -14996607 - L1MEc LINE L1 -5121 998 856 1227 47 0 0 chr13 104748302 104748450 -14996448 - L1PA5 LINE L1 -8 6146 5999 415 322 78 53 chr13 104748589 104749228 -14995670 - L1MEc LINE L1 -5361 758 104 351 65 0 0 chr13 104749378 104749424 -14995474 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 1842 161 3 7 chr13 104754268 104754566 -14990332 + AluJo SINE Alu 3 299 -13 1259 149 0 68 chr13 104754602 104754664 -14990234 + AluJo SINE Alu 86 151 -161 2545 48 0 0 chr13 104754664 104754955 -14989943 + AluY SINE Alu 1 291 -20 1259 149 0 68 chr13 104754955 104755114 -14989784 + AluJo SINE Alu 151 292 -20 2118 115 14 0 chr13 104755974 104756261 -14988637 + AluSx SINE Alu 1 291 -21 2273 85 0 7 chr13 104756332 104756613 -14988285 + AluSg SINE Alu 1 279 -31 236 179 0 0 chr13 104756625 104756664 -14988234 - LTR67 LTR ERVL -10 547 509 831 131 23 23 chr13 104757111 104757241 -14987657 + FLAM_C SINE Alu 1 130 -3 232 250 0 0 chr13 104758308 104758364 -14986534 + T-rich Low_complexity Low_complexity 1 56 0 370 279 100 31 chr13 104758555 104758929 -14985969 - MLT1J LTR MaLR -2 509 80 * 393 252 65 7 chr13 104758914 104759053 -14985845 + MER115 DNA AcHobo 226 372 -321 1991 67 0 0 chr13 104759406 104759646 -14985252 + AluY SINE Alu 1 240 -71 2382 102 0 0 chr13 104759931 104760234 -14984664 - AluSx SINE Alu -9 303 1 196 235 59 0 chr13 104764131 104764199 -14980699 + MIR SINE MIR 163 234 -28 2125 111 0 0 chr13 104764380 104764677 -14980221 + AluSx SINE Alu 1 297 -15 2019 117 10 0 chr13 104765300 104765591 -14979307 + AluSq SINE Alu 2 295 -18 2089 111 0 0 chr13 104765770 104766067 -14978831 - AluY SINE Alu -2 309 13 1578 168 58 3 chr13 104766069 104766240 -14978658 - AluJb SINE Alu -4 308 113 216 0 0 0 chr13 104766240 104766264 -14978634 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1578 168 58 3 chr13 104766264 104766384 -14978514 - AluJb SINE Alu -199 113 1 2290 92 0 0 chr13 104768302 104768607 -14976291 + AluSx SINE Alu 1 305 -7 770 158 7 43 chr13 104768853 104768992 -14975906 + FLAM_C SINE Alu 2 135 -8 1457 151 45 64 chr13 104769688 104770000 -14974898 - AluJb SINE Alu -6 306 1 1155 104 0 71 chr13 104770516 104770699 -14974199 - AluSg SINE Alu -139 171 2 1087 131 51 0 chr13 104770707 104770882 -14974016 - AluSg/x SINE Alu -10 300 117 443 108 54 14 chr13 104770896 104770970 -14973928 - Tigger3(Golem) DNA MER2_type -2952 77 1 21 0 0 0 chr13 104771867 104771888 -14973010 + AT_rich Low_complexity Low_complexity 1 21 0 2255 94 0 0 chr13 104772200 104772499 -14972399 + AluSx SINE Alu 1 299 -13 1149 161 3 97 chr13 104772933 104773232 -14971666 + MER58D DNA MER1_type 110 380 -6 1813 174 0 6 chr13 104773338 104773649 -14971249 - AluJo SINE Alu -2 310 2 312 267 22 11 chr13 104773831 104773921 -14970977 + MIR SINE MIR 123 213 -49 2143 102 23 0 chr13 104774188 104774492 -14970406 - AluSx SINE Alu -1 311 1 183 282 239 0 chr13 104774972 104775089 -14969809 + L2 LINE L2 3168 3312 -1 322 274 258 16 chr13 104775489 104775675 -14969223 - MIR SINE MIR -24 238 8 2089 120 13 3 chr13 104777841 104778150 -14966748 + AluSp SINE Alu 1 312 -1 2394 96 0 0 chr13 104878668 104878969 -14865929 + AluSq SINE Alu 11 311 -2 537 323 61 25 chr13 104879160 104879519 -14865379 - L1MEc LINE L1 -5918 478 107 2415 81 3 0 chr13 104879673 104879969 -14864929 + AluSp SINE Alu 1 297 -16 190 140 18 18 chr13 104880039 104880083 -14864815 + (TA)n Simple_repeat Simple_repeat 2 48 -10 2309 108 3 3 chr13 104880083 104880388 -14864510 - AluSx SINE Alu -7 305 1 190 140 18 18 chr13 104880388 104880400 -14864498 + (TA)n Simple_repeat Simple_repeat 47 58 0 314 321 33 11 chr13 104880748 104880932 -14863966 - HAL1 LINE L1 -863 1644 1457 1781 176 51 14 chr13 104880988 104881284 -14863614 - AluJo SINE Alu -5 307 1 987 44 0 0 chr13 104881505 104881618 -14863280 + AluSp SINE Alu 5 117 -196 2427 87 0 7 chr13 104881618 104881927 -14862971 + AluSc SINE Alu 1 307 -2 1467 119 5 0 chr13 104881940 104882133 -14862765 + AluSp SINE Alu 103 296 -17 2221 104 40 0 chr13 104882604 104882903 -14861995 + AluY SINE Alu 1 311 0 2302 109 3 0 chr13 104883274 104883577 -14861321 + AluSx SINE Alu 1 304 -8 2244 95 10 3 chr13 104883656 104883960 -14860938 - AluSq SINE Alu -7 306 1 484 156 0 22 chr13 104884005 104884095 -14860803 + FLAM_C SINE Alu 55 142 -1 275 269 62 92 chr13 104884127 104884197 -14860701 - L1MC4 LINE L1 -405 7637 7566 2415 94 0 0 chr13 104884197 104884494 -14860404 - AluSg SINE Alu -13 297 1 275 269 62 92 chr13 104884494 104884824 -14860074 - L1MC4 LINE L1 -476 7566 7249 782 157 8 22 chr13 104884839 104884973 -14859925 - FLAM_A SINE Alu -1 132 1 1408 161 0 0 chr13 104885109 104885326 -14859572 + MER20 DNA MER1_type 2 218 -1 1226 118 0 0 chr13 104886610 104886771 -14858127 - AluSg/x SINE Alu -15 297 137 261 269 153 78 chr13 104887068 104887376 -14857522 + L1ME3A LINE L1 3658 3988 -2158 458 280 30 61 chr13 104887402 104887516 -14857382 + L1ME3A LINE L1 5677 5793 -377 2207 96 7 0 chr13 104887516 104887832 -14857066 + AluSp SINE Alu 1 318 0 458 280 30 61 chr13 104887832 104888012 -14856886 + L1ME3A LINE L1 5793 5963 -207 399 322 69 45 chr13 104888066 104888268 -14856630 + L1ME3A LINE L1 5962 6168 -2 307 214 64 88 chr13 104888364 104888449 -14856449 - L1MD3 LINE L1 0 8042 7956 2460 86 0 0 chr13 104888449 104888751 -14856147 - AluY SINE Alu -9 302 1 307 214 64 88 chr13 104888751 104889123 -14855775 - L1MD3 LINE L1 -86 7956 7606 2479 84 3 0 chr13 104889123 104889434 -14855464 - AluSp SINE Alu -1 312 1 307 214 64 88 chr13 104889434 104889709 -14855189 - L1MD3 LINE L1 -436 7606 7326 2731 32 0 13 chr13 104889925 104890239 -14854659 - AluY SINE Alu -1 310 1 1804 58 5 9 chr13 104890247 104890470 -14854428 - AluY SINE Alu -7 304 83 1945 117 38 0 chr13 104890496 104890761 -14854137 + AluSg SINE Alu 23 297 -13 1870 157 68 31 chr13 104891214 104891539 -14853359 - MER1B DNA MER1_type 0 337 1 2174 128 3 0 chr13 104892193 104892490 -14852408 - AluSq SINE Alu -10 303 6 689 111 8 10 chr13 104892734 104892979 -14851919 + AluSg SINE Alu 1 295 -14 2093 137 0 13 chr13 104893157 104893470 -14851428 + AluSc SINE Alu 1 309 0 2059 115 3 7 chr13 104893867 104894153 -14850745 - AluSp SINE Alu -16 297 13 2152 121 0 16 chr13 104894423 104894737 -14850161 + AluSx SINE Alu 1 309 -3 342 0 0 0 chr13 104896294 104896332 -14848566 + (CA)n Simple_repeat Simple_repeat 1 38 0 305 93 19 0 chr13 104902466 104902520 -14842378 + (TG)n Simple_repeat Simple_repeat 1 55 0 186 71 0 0 chr13 104903029 104903057 -14841841 + (TTG)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr13 104903323 104903346 -14841552 + (CAA)n Simple_repeat Simple_repeat 2 24 0 32 0 0 0 chr13 104905046 104905078 -14839820 + AT_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr13 104907447 104907483 -14837415 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr13 104907529 104907565 -14837333 + AT_rich Low_complexity Low_complexity 1 36 0 243 0 0 0 chr13 104910579 104910606 -14834292 + (TGG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr13 104911199 104911229 -14833669 + GC_rich Low_complexity Low_complexity 1 30 0 213 338 0 0 chr13 104911639 104911707 -14833191 + C-rich Low_complexity Low_complexity 1 68 0 23 54 0 0 chr13 104911747 104911784 -14833114 + GC_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr13 104911808 104911841 -14833057 + GC_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr13 104913884 104913914 -14830984 + GC_rich Low_complexity Low_complexity 1 30 0 212 188 0 21 chr13 104918573 104918621 -14826277 + T-rich Low_complexity Low_complexity 2 48 0 733 148 0 0 chr13 104921308 104921416 -14823482 - AluJb SINE Alu -203 109 2 405 0 0 0 chr13 104921435 104921480 -14823418 + (CA)n Simple_repeat Simple_repeat 1 45 0 378 197 0 0 chr13 104921483 104921544 -14823354 - AluS SINE Alu -242 61 1 246 116 0 0 chr13 104921561 104921604 -14823294 + (CA)n Simple_repeat Simple_repeat 1 43 0 1296 132 109 141 chr13 104921614 104921962 -14822936 + MER7A DNA MER2_type 11 345 -1 241 275 0 22 chr13 104921962 104922053 -14822845 + (TA)n Simple_repeat Simple_repeat 1 89 0 1784 135 0 30 chr13 104922053 104922349 -14822549 + AluJo SINE Alu 1 287 -25 231 36 0 0 chr13 104922367 104922395 -14822503 + (TG)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr13 104922396 104922421 -14822477 + (TA)n Simple_repeat Simple_repeat 2 26 0 259 219 88 58 chr13 104922433 104922570 -14822328 + L1MC4 LINE L1 7902 8042 0 26 30 0 0 chr13 104922578 104922611 -14822287 + AT_rich Low_complexity Low_complexity 1 33 0 2071 119 3 0 chr13 104922823 104923126 -14821772 - AluSp SINE Alu -9 304 1 2153 108 0 0 chr13 104923158 104923454 -14821444 - AluSx SINE Alu -16 296 1 418 95 55 5 chr13 104923550 104923750 -14821148 - AluSc SINE Alu -9 300 1 432 287 96 7 chr13 104923774 104923910 -14820988 - MIR SINE MIR -75 187 40 2434 72 0 0 chr13 104924057 104924362 -14820536 + AluSg SINE Alu 1 305 -5 22 56 0 0 chr13 104924844 104924880 -14820018 + AT_rich Low_complexity Low_complexity 1 36 0 1991 109 0 7 chr13 104924880 104925202 -14819696 + AluSx SINE Alu 1 320 0 2186 106 3 0 chr13 104925294 104925597 -14819301 - AluSq SINE Alu -9 304 1 1718 218 109 55 chr13 104925632 104925937 -14818961 - L1MC4a LINE L1 -1866 5942 5655 1359 152 92 179 chr13 104925937 104926490 -14818408 + MLT1D LTR MaLR 1 505 0 1718 218 109 55 chr13 104926490 104926792 -14818106 - L1MC4a LINE L1 -2153 5655 5295 2187 110 3 0 chr13 104926792 104927101 -14817797 - AluSx SINE Alu -2 310 1 1718 218 109 55 chr13 104927101 104927145 -14817753 - L1MC4a LINE L1 -2513 5295 5255 22 35 0 0 chr13 104927226 104927255 -14817643 + AT_rich Low_complexity Low_complexity 1 29 0 2138 114 10 0 chr13 104927402 104927710 -14817188 - AluSx SINE Alu -1 311 1 1709 160 10 13 chr13 104927919 104928219 -14816679 - AluJo SINE Alu -13 299 1 2274 83 3 0 chr13 104928746 104929047 -14815851 + AluSp SINE Alu 1 302 -11 453 307 84 42 chr13 104929083 104929321 -14815577 + L2 LINE L2 2185 2432 -882 780 143 143 0 chr13 104929383 104929516 -14815382 + FAM SINE Alu 1 49 0 2417 63 0 0 chr13 104929518 104929819 -14815079 + AluY SINE Alu 1 301 -10 2027 124 0 0 chr13 104930318 104930609 -14814289 - AluSx SINE Alu -17 295 5 25 0 0 0 chr13 104930661 104930686 -14814212 + AT_rich Low_complexity Low_complexity 1 25 0 6493 125 84 17 chr13 104930803 104931725 -14813173 - Tigger2 DNA MER2_type 0 2718 1714 2321 90 3 0 chr13 104931725 104932036 -14812862 - AluSp SINE Alu -1 312 1 6493 125 84 17 chr13 104932036 104932178 -14812720 - Tigger2 DNA MER2_type -1004 1714 1583 1762 71 4 0 chr13 104932680 104932948 -14811950 + AluY SINE Alu 63 311 0 1803 102 0 62 chr13 104932948 104933067 -14811831 - Tigger2 DNA MER2_type -1211 1507 1382 2744 3 0 0 chr13 104933067 104933371 -14811527 + AluYa5 SINE Alu 1 304 -7 1803 102 0 62 chr13 104933371 104933526 -14811372 - Tigger2 DNA MER2_type -1336 1382 1250 399 240 170 10 chr13 104933566 104933930 -14810968 - L1MC/D LINE L1 -822 5324 5150 528 287 71 48 chr13 104934026 104934294 -14810604 + MLT1J1 LTR MaLR 121 394 -52 1297 152 114 97 chr13 104934329 104934469 -14810429 + AluJo SINE Alu 2 138 -164 1891 134 3 3 chr13 104934469 104934753 -14810145 - AluSx SINE Alu -28 284 1 1297 152 114 97 chr13 104934753 104934901 -14809997 + AluJo SINE Alu 138 295 -7 2335 82 0 0 chr13 104934920 104935225 -14809673 + AluY SINE Alu 2 306 -5 1316 195 55 12 chr13 104935293 104935549 -14809349 + Tigger7 DNA MER2_type 1 267 -2220 596 175 10 0 chr13 104935548 104935645 -14809253 + Tigger7 DNA MER2_type 2390 2487 0 * 458 302 131 30 chr13 104935663 104935692 -14809206 - L1MC/D LINE L1 -1034 5112 5087 2199 97 7 0 chr13 104935692 104936000 -14808898 + AluSx SINE Alu 1 310 -2 458 302 131 30 chr13 104936000 104936322 -14808576 - L1MC/D LINE L1 -1059 5087 4723 384 22 0 0 chr13 104936409 104936454 -14808444 + (CA)n Simple_repeat Simple_repeat 1 45 0 2246 93 0 0 chr13 104936520 104936820 -14808078 + AluSq SINE Alu 1 300 -13 517 183 77 0 chr13 104936953 104937057 -14807841 - AluJb SINE Alu -199 113 2 2063 114 157 19 chr13 104937110 104937486 -14807412 - MSTA LTR MaLR 0 428 1 8729 130 57 48 chr13 104937489 104938669 -14806229 - MSTA-int LTR MaLR -3 1577 378 2317 89 0 0 chr13 104938669 104938973 -14805925 - AluSq SINE Alu -9 304 1 8729 130 57 48 chr13 104938973 104939346 -14805552 - MSTA-int LTR MaLR -1202 378 10 2003 147 155 11 chr13 104939351 104939725 -14805173 - MSTA LTR MaLR 0 428 1 796 304 105 37 chr13 104939727 104939997 -14804901 - L1MC/D LINE L1 -1762 4384 4134 2405 70 0 0 chr13 104939997 104940295 -14804603 - AluY SINE Alu -13 298 1 796 304 105 37 chr13 104940295 104940784 -14804114 - L1MC/D LINE L1 -2012 4134 3573 4075 99 10 51 chr13 104940795 104940958 -14803940 + LTR43 LTR ERV1 1 169 -433 2225 95 0 10 chr13 104940958 104941264 -14803634 - AluSq SINE Alu -6 307 5 4075 99 10 51 chr13 104941264 104941728 -14803170 + LTR43 LTR ERV1 169 602 0 1871 93 31 17 chr13 104941768 104942058 -14802840 - AluY SINE Alu -17 294 1 1955 134 3 16 chr13 104942086 104942393 -14802505 + AluSx SINE Alu 1 303 -9 1864 99 60 3 chr13 104942679 104942961 -14801937 - AluSx SINE Alu -14 298 1 320 128 0 12 chr13 104943072 104943134 -14801764 - Alu SINE Alu -259 43 1 674 210 16 0 chr13 104943277 104943401 -14801497 + FLAM_A SINE Alu 1 126 -7 1192 184 61 102 chr13 104943403 104943864 -14801034 - L1M4 LINE L1 -1809 4337 3896 * 1249 242 77 55 chr13 104943849 104943908 -14800990 - L1MC/D LINE L1 -2629 3517 3461 2061 175 66 32 chr13 104943908 104944347 -14800551 - MSTB2 LTR MaLR 0 457 4 1249 242 77 55 chr13 104944347 104944458 -14800440 - L1MC/D LINE L1 -2685 3461 3354 812 183 0 0 chr13 104944458 104944589 -14800309 - FLAM_A SINE Alu -2 131 1 1249 242 77 55 chr13 104944589 104944717 -14800181 - L1MC/D LINE L1 -2792 3354 3230 2040 83 55 14 chr13 104944717 104945006 -14799892 - AluSq SINE Alu -12 301 1 1249 242 77 55 chr13 104945006 104945163 -14799735 - L1MC/D LINE L1 -2916 3230 3078 1974 117 0 3 chr13 104945163 104945469 -14799429 - AluSx SINE Alu 0 305 1 2136 104 3 3 chr13 104945479 104945786 -14799112 - AluSq SINE Alu -6 307 1 1249 242 77 55 chr13 104945786 104946042 -14798856 - L1MC/D LINE L1 -3076 3070 2775 2542 14 0 0 chr13 104946042 104946383 -14798515 - AluYb8 SINE Alu 0 342 2 480 145 0 0 chr13 104946426 104946502 -14798396 - AluJ/FLAM SINE Alu -235 77 2 852 180 79 26 chr13 104946559 104946748 -14798150 + MER3 DNA MER1_type 11 209 0 1658 111 35 21 chr13 104946846 104947135 -14797763 + AluY SINE Alu 2 294 -17 4075 99 10 51 chr13 104947175 104947639 -14797259 - LTR43 LTR ERV1 0 602 169 1867 133 0 19 chr13 104947639 104947948 -14796950 + AluSq SINE Alu 5 307 -6 4075 99 10 51 chr13 104947948 104948111 -14796787 - LTR43 LTR ERV1 -433 169 1 825 303 105 37 chr13 104948122 104948611 -14796287 + L1M4 LINE L1 3573 4134 -2012 2405 70 0 0 chr13 104948611 104948909 -14795989 + AluY SINE Alu 1 298 -13 825 303 105 37 chr13 104948909 104949179 -14795719 + L1M4 LINE L1 4134 4384 -1762 2003 147 155 11 chr13 104949181 104949555 -14795343 + MSTA LTR MaLR 1 428 0 3052 133 65 19 chr13 104949560 104949933 -14794965 + MSTA-int LTR MaLR 10 415 -1236 2317 89 0 0 chr13 104949933 104950237 -14794661 + AluSq SINE Alu 1 304 -9 3052 133 65 19 chr13 104950237 104950390 -14794508 + MSTA-int LTR MaLR 415 560 -1091 34 0 0 0 chr13 104950693 104950727 -14794171 + GC_rich Low_complexity Low_complexity 1 34 0 366 61 0 0 chr13 104950848 104950897 -14794001 + (CCG)n Simple_repeat Simple_repeat 1 49 0 210 176 0 0 chr13 104951195 104951246 -14793652 + (CCG)n Simple_repeat Simple_repeat 3 53 0 22 0 0 0 chr13 104955923 104955945 -14788953 + AT_rich Low_complexity Low_complexity 1 22 0 321 26 0 0 chr13 104956255 104956293 -14788605 + (TA)n Simple_repeat Simple_repeat 2 39 0 328 167 83 0 chr13 104960573 104960633 -14784265 - L1MCa LINE L1 -4354 2072 2008 472 230 22 17 chr13 104960739 104960917 -14783981 + GA-rich Low_complexity Low_complexity 2 180 0 338 251 17 25 chr13 104960938 104961281 -14783617 + GA-rich Low_complexity Low_complexity 1 340 0 408 273 17 6 chr13 104961300 104961476 -14783422 + A-rich Low_complexity Low_complexity 3 180 0 21 0 0 0 chr13 104962168 104962189 -14782709 + GC_rich Low_complexity Low_complexity 1 21 0 196 161 145 81 chr13 104963391 104963453 -14781445 - MIR3 SINE MIR -31 177 112 405 0 0 0 chr13 104963936 104963981 -14780917 + (TG)n Simple_repeat Simple_repeat 1 45 0 28 0 0 0 chr13 104964852 104964880 -14780018 + GC_rich Low_complexity Low_complexity 1 28 0 235 265 0 0 chr13 104965596 104965645 -14779253 + (CGTG)n Simple_repeat Simple_repeat 3 51 0 1906 130 28 0 chr13 104966990 104967275 -14777623 + AluSx SINE Alu 1 293 -19 324 0 0 0 chr13 104967706 104967742 -14777156 + (CA)n Simple_repeat Simple_repeat 1 36 0 1899 184 0 0 chr13 104969055 104969359 -14775539 + AluSx SINE Alu 1 304 -8 2142 122 0 20 chr13 104969656 104969959 -14774939 + AluSx SINE Alu 1 297 -15 241 83 0 0 chr13 104969959 104969995 -14774903 - L1MB3 LINE L1 -10 6173 6138 2138 204 18 2 chr13 104970145 104970351 -14774547 - L1MB3 LINE L1 -44 6139 5934 955 268 7 15 chr13 104970351 104970623 -14774275 - L1ME3 LINE L1 -234 5928 5659 423 0 0 0 chr13 104970794 104970841 -14774057 + (TG)n Simple_repeat Simple_repeat 2 48 0 1932 168 9 0 chr13 104972534 104972880 -14772018 - L1MB3 LINE L1 -51 6132 5784 1474 150 0 13 chr13 104973410 104973637 -14771261 - AluJb SINE Alu -1 311 88 775 169 0 114 chr13 104973908 104974020 -14770878 - MER20 DNA MER1_type -56 163 78 1577 152 145 0 chr13 104974020 104974289 -14770609 + AluJo SINE Alu 1 308 -4 775 169 0 114 chr13 104974289 104974360 -14770538 - MER20 DNA MER1_type -141 78 1 499 302 239 43 chr13 104974365 104975512 -14769386 - L2 LINE L2 -410 2904 1533 702 214 41 15 chr13 104975518 104975714 -14769184 - L1MB4 LINE L1 0 6180 5980 960 188 12 6 chr13 104975727 104975892 -14769006 - FRAM SINE Alu 0 166 1 777 273 121 74 chr13 104975903 104976235 -14768663 - L2 LINE L2 -1769 1545 1230 2255 97 0 3 chr13 104976235 104976580 -14768318 - AluSg SINE Alu 0 345 2 777 273 121 74 chr13 104976580 104976606 -14768292 - L2 LINE L2 -2084 1230 1207 1073 164 20 0 chr13 104976606 104976641 -14768257 - L1MB3 LINE L1 -7 6176 6143 2140 107 3 10 chr13 104976641 104976941 -14767957 - AluSx SINE Alu -14 298 1 1073 164 20 0 chr13 104976941 104977106 -14767792 - L1MB3 LINE L1 -40 6143 5972 777 273 121 74 chr13 104977106 104977282 -14767616 - L2 LINE L2 -2107 1207 983 22 0 0 0 chr13 104978076 104978098 -14766800 + AT_rich Low_complexity Low_complexity 1 22 0 2474 88 3 0 chr13 104978108 104978416 -14766482 + AluSq SINE Alu 1 309 -4 2327 110 0 0 chr13 104978520 104978819 -14766079 - AluY SINE Alu -11 300 2 493 145 0 0 chr13 104978862 104978938 -14765960 - AluJ/FLAM SINE Alu -235 77 2 807 186 82 16 chr13 104979001 104979184 -14765714 + MER3 DNA MER1_type 15 209 0 2535 57 0 13 chr13 104979282 104979582 -14765316 + AluY SINE Alu 2 297 -14 855 261 20 102 chr13 104979910 104980180 -14764718 + L1MC4a LINE L1 5543 5763 -2045 619 129 7 168 chr13 104980180 104980335 -14764563 + FLAM_C SINE Alu 1 130 -3 855 261 20 102 chr13 104980335 104980513 -14764385 + L1MC4a LINE L1 5763 5954 -1854 1767 148 18 28 chr13 104980706 104981015 -14763883 + AluSx SINE Alu 1 306 0 2949 158 12 43 chr13 104981610 104981666 -14763232 + L1MB3 LINE L1 5621 5677 -506 1953 129 17 24 chr13 104981666 104981803 -14763095 + AluJb SINE Alu 1 137 -175 1935 67 126 7 chr13 104981803 104982072 -14762826 + AluYa8 SINE Alu 1 301 -9 1953 129 17 24 chr13 104982072 104982229 -14762669 + AluJb SINE Alu 137 293 -19 2949 158 12 43 chr13 104982229 104982753 -14762145 + L1MB3 LINE L1 5677 6183 0 1900 163 30 25 chr13 104982873 104983234 -14761664 - L1MC1 LINE L1 -5 6328 5966 1926 169 0 23 chr13 104983234 104983542 -14761356 - AluJo SINE Alu -9 303 3 435 95 26 181 chr13 104983568 104983684 -14761214 + MER20 DNA MER1_type 53 150 -69 2179 80 29 0 chr13 104983716 104984014 -14760884 + AluSp SINE Alu 1 306 0 206 200 0 0 chr13 104984086 104984126 -14760772 + L2 LINE L2 3274 3313 0 2276 77 6 45 chr13 104984601 104984913 -14759985 + AluY SINE Alu 1 300 -11 839 138 0 51 chr13 104985302 104985440 -14759458 - FLAM_C SINE Alu -2 131 1 291 326 73 32 chr13 104985687 104985905 -14758993 - L2 LINE L2 -222 3050 2824 286 211 169 0 chr13 104985960 104986031 -14758867 - MER91C DNA MER1_type -43 97 15 457 316 99 19 chr13 104986051 104986103 -14758795 - MIR SINE MIR -6 256 210 1338 184 6 130 chr13 104986103 104986457 -14758441 - AluJo SINE Alu -2 310 1 457 316 99 19 chr13 104986457 104986616 -14758282 - MIR SINE MIR -52 210 28 289 268 195 16 chr13 104986995 104987095 -14757803 + MIR SINE MIR 21 148 -114 2351 79 21 0 chr13 104987095 104987386 -14757512 + AluSx SINE Alu 3 299 -13 289 268 195 16 chr13 104987386 104987408 -14757490 + MIR SINE MIR 148 165 -97 1850 123 49 85 chr13 104987709 104988098 -14756800 + THE1C LTR MaLR 1 375 0 1980 139 3 10 chr13 104988147 104988448 -14756450 - AluJb SINE Alu -13 299 1 1382 168 0 0 chr13 104988475 104988684 -14756214 - AluJb SINE Alu -14 298 90 433 184 0 13 chr13 104988684 104988760 -14756138 + AluS SINE Alu 223 297 -12 1181 177 76 16 chr13 104988764 104989131 -14755767 - L1MA9 LINE L1 -22 6290 5805 2181 105 0 10 chr13 104989162 104989457 -14755441 + AluSx SINE Alu 1 292 -20 33 0 0 0 chr13 104989525 104989558 -14755340 + AT_rich Low_complexity Low_complexity 1 33 0 2560 66 3 3 chr13 104989570 104989872 -14755026 + AluSp SINE Alu 1 302 -11 1222 134 10 16 chr13 104989872 104990066 -14754832 - 7SLRNA srpRNA srpRNA -22 298 106 638 179 6 0 chr13 104990714 104990887 -14754011 + (TG)n Simple_repeat Simple_repeat 2 175 0 261 155 0 0 chr13 104990899 104990957 -14753941 + (TG)n Simple_repeat Simple_repeat 1 58 0 937 118 7 7 chr13 104991959 104992094 -14752804 + AluJo SINE Alu 1 135 -177 2436 106 0 0 chr13 104992094 104992405 -14752493 + AluSx SINE Alu 1 311 -1 2111 131 0 7 chr13 104992851 104993149 -14751749 + AluSx SINE Alu 1 296 -16 821 159 8 0 chr13 104993212 104993344 -14751554 + AluJo SINE Alu 1 133 -169 24 0 0 0 chr13 104993378 104993402 -14751496 + AT_rich Low_complexity Low_complexity 1 24 0 809 232 99 0 chr13 104993572 104993783 -14751115 - L1MA8 LINE L1 -19 6272 6041 1927 120 33 4 chr13 104993906 104994205 -14750693 + AluSx SINE Alu 1 307 0 1967 131 0 72 chr13 104994219 104994540 -14750358 + AluJb SINE Alu 1 298 -14 924 217 0 0 chr13 104994554 104994711 -14750187 + AluJo SINE Alu 137 293 -9 528 301 111 18 chr13 104994723 104994949 -14749949 - MIR SINE MIR -2 260 14 715 264 88 31 chr13 104996323 104996550 -14748348 + MIR SINE MIR 22 261 -1 1552 164 0 4 chr13 104996922 104997153 -14747745 + AluJo SINE Alu 1 230 -82 276 30 0 0 chr13 104997158 104997191 -14747707 + (A)n Simple_repeat Simple_repeat 1 33 0 1810 172 11 3 chr13 104997219 104997504 -14747394 + AluJb SINE Alu 4 290 -22 3372 151 10 7 chr13 104997525 104998109 -14746789 - L1MB3 LINE L1 -40 6143 5558 890 135 0 8 chr13 104998111 104998244 -14746654 - FLAM_C SINE Alu -4 139 8 760 163 23 0 chr13 104998250 104998379 -14746519 - L1MB3 LINE L1 -620 5563 5432 199 111 0 0 chr13 104999434 104999470 -14745428 - L2 LINE L2 -252 3061 3026 2270 109 6 0 chr13 104999844 105000155 -14744743 + AluSq SINE Alu 1 313 0 338 291 99 40 chr13 105000432 105000583 -14744315 + L1MC4 LINE L1 6549 6708 -1334 1357 42 0 0 chr13 105000737 105000903 -14743995 + L1PA4 LINE L1 5989 6154 -1 2399 61 0 46 chr13 105000918 105001244 -14743654 + AluY SINE Alu 1 311 0 23 33 0 0 chr13 105001308 105001338 -14743560 + AT_rich Low_complexity Low_complexity 1 30 0 2484 80 0 16 chr13 105001882 105002194 -14742704 + AluSg SINE Alu 1 307 -3 2294 107 3 0 chr13 105002795 105003095 -14741803 - AluSx SINE Alu -11 301 1 2126 144 0 29 chr13 105003900 105004213 -14740685 - AluSx SINE Alu -8 304 1 2355 118 0 0 chr13 105006307 105006620 -14738278 + AluSq SINE Alu 1 313 0 834 176 46 0 chr13 105006941 105007094 -14737804 + FRAM SINE Alu 1 159 -17 2274 90 17 7 chr13 105007161 105007461 -14737437 - AluSx SINE Alu -9 303 1 835 156 0 22 chr13 105008936 105009071 -14735827 - FLAM_A SINE Alu -1 132 1 21 0 0 0 chr13 105009074 105009095 -14735803 + AT_rich Low_complexity Low_complexity 1 21 0 973 161 6 6 chr13 105009098 105009259 -14735639 + AluJo SINE Alu 1 161 -151 27 0 0 0 chr13 105009282 105009309 -14735589 + AT_rich Low_complexity Low_complexity 1 27 0 269 270 22 34 chr13 105010446 105010624 -14734274 + GA-rich Low_complexity Low_complexity 4 179 0 * 370 253 0 48 chr13 105010586 105010772 -14734126 + (CAGAGA)n Simple_repeat Simple_repeat 3 179 0 221 105 0 158 chr13 105011209 105011285 -14733613 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 432 229 143 35 chr13 105011544 105011707 -14733191 - MIR SINE MIR -58 204 16 270 269 13 13 chr13 105011977 105012055 -14732843 + MER117 DNA MER1_type 44 121 -76 226 240 0 0 chr13 105012141 105012191 -14732707 + MER117 DNA MER1_type 72 121 -76 * 373 271 33 0 chr13 105012175 105012297 -14732601 + MER117 DNA MER1_type 72 197 0 687 194 123 7 chr13 105012546 105012701 -14732197 - MIR SINE MIR -11 251 79 248 303 225 0 chr13 105013098 105013187 -14731711 - L2 LINE L2 0 3313 3205 1117 201 129 19 chr13 105014106 105014370 -14730528 - AluJo SINE Alu -15 297 5 371 256 30 8 chr13 105014378 105014511 -14730387 - L1ME4a LINE L1 -16 6105 5970 974 220 54 9 chr13 105014552 105014775 -14730123 - MIR SINE MIR -1 261 29 261 319 166 22 chr13 105014801 105015030 -14729868 - L1ME4a LINE L1 -244 5877 5616 2230 90 40 10 chr13 105015226 105015527 -14729371 + AluSx SINE Alu 1 310 -2 304 215 0 65 chr13 105015732 105015825 -14729073 - L1ME4a LINE L1 0 6121 6035 1880 122 0 28 chr13 105015888 105016174 -14728724 + AluJb SINE Alu 13 290 -22 195 200 0 0 chr13 105016548 105016583 -14728315 + L2 LINE L2 3229 3263 -9 341 256 12 12 chr13 105017712 105017798 -14727100 - MER5B DNA MER1_type -80 98 13 1353 137 0 47 chr13 105017879 105018112 -14726786 - AluJo SINE Alu -5 307 86 369 153 0 0 chr13 105018507 105018579 -14726319 + (TG)n Simple_repeat Simple_repeat 1 72 0 2012 104 0 18 chr13 105020025 105020271 -14724627 + AluSx SINE Alu 36 278 -34 222 62 0 0 chr13 105020271 105020303 -14724595 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2012 104 0 18 chr13 105020303 105020336 -14724562 + AluSx SINE Alu 278 310 -2 185 279 115 0 chr13 105021282 105021343 -14723555 + MIR SINE MIR 35 102 -106 207 279 12 81 chr13 105021362 105021448 -14723450 + MER91C DNA MER1_type 36 115 -25 2209 126 0 0 chr13 105021723 105022033 -14722865 + AluSx SINE Alu 1 310 -2 255 209 0 0 chr13 105022149 105022192 -14722706 - L2 LINE L2 -20 3252 3210 22 0 0 0 chr13 105022245 105022267 -14722631 + AT_rich Low_complexity Low_complexity 1 22 0 851 140 124 5 chr13 105022267 105022453 -14722445 - L1MB3 LINE L1 -7 6176 5969 335 278 37 0 chr13 105022554 105022662 -14722236 - LTR16A LTR ERVL -78 372 261 225 324 56 63 chr13 105022808 105022950 -14721948 - MIR SINE MIR -78 184 44 2107 97 25 4 chr13 105023981 105024286 -14720612 - AluSq SINE Alu 0 311 1 30 27 0 0 chr13 105025752 105025789 -14719109 + GC_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr13 105025834 105025879 -14719019 + GC_rich Low_complexity Low_complexity 1 45 0 2291 101 0 7 chr13 105031182 105031480 -14713418 + AluSx SINE Alu 1 296 -16 183 343 41 0 chr13 105031506 105031579 -14713319 - MIR3 SINE MIR 0 208 133 243 244 39 142 chr13 105031626 105031753 -14713145 - MIR3 SINE MIR -51 157 44 24 0 0 0 chr13 105033171 105033195 -14711703 + AT_rich Low_complexity Low_complexity 1 24 0 2155 87 14 11 chr13 105033195 105033482 -14711416 - AluSx SINE Alu -24 288 1 345 254 18 9 chr13 105033519 105033629 -14711269 - MIR SINE MIR 0 262 152 938 149 22 110 chr13 105033629 105033801 -14711097 - L1MA7 LINE L1 0 6171 6050 2203 117 3 0 chr13 105033801 105034092 -14710806 + AluSx SINE Alu 7 298 -14 938 149 22 110 chr13 105034092 105034175 -14710723 - L1MA7 LINE L1 -121 6050 5961 1747 133 23 4 chr13 105034203 105034466 -14710432 - AluJb SINE Alu -36 276 9 284 309 15 52 chr13 105034502 105034638 -14710260 - MIR SINE MIR -113 149 19 236 230 221 26 chr13 105034707 105034820 -14710078 + MER5A DNA MER1_type 50 184 -5 270 297 62 8 chr13 105034983 105035111 -14709787 - L2 LINE L2 0 3272 3138 204 167 0 48 chr13 105035566 105035608 -14709290 + (ATGGTG)n Simple_repeat Simple_repeat 5 44 0 257 250 24 73 chr13 105037240 105037364 -14707534 - L2 LINE L2 -27 3286 3169 743 143 48 0 chr13 105037817 105037943 -14706955 + AluJb SINE Alu 159 290 -22 2378 88 0 0 chr13 105038415 105038711 -14706187 - AluSg SINE Alu -14 296 1 195 139 0 0 chr13 105038959 105038995 -14705903 + (GCCTG)n Simple_repeat Simple_repeat 3 38 0 1840 147 0 33 chr13 105039271 105039577 -14705321 - AluJb SINE Alu -16 296 1 31 68 0 0 chr13 105039813 105039872 -14705026 + AT_rich Low_complexity Low_complexity 1 59 0 1816 129 40 18 chr13 105040227 105040505 -14704393 + AluJo SINE Alu 1 284 -28 504 278 64 32 chr13 105041397 105041584 -14703314 + MIR SINE MIR 13 205 -57 2341 95 10 0 chr13 105041585 105041881 -14703017 + AluSx SINE Alu 1 299 -13 232 143 36 0 chr13 105041881 105041937 -14702961 + (TA)n Simple_repeat Simple_repeat 1 58 0 427 214 32 32 chr13 105043282 105043408 -14701490 - L1MB7 LINE L1 0 6184 6059 23 0 0 0 chr13 105043436 105043459 -14701439 + AT_rich Low_complexity Low_complexity 1 23 0 2354 92 10 0 chr13 105044078 105044381 -14700517 + AluSg SINE Alu 1 306 -4 246 324 28 49 chr13 105045200 105045342 -14699556 + MIR3 SINE MIR 45 183 -25 2304 109 0 3 chr13 105045508 105045810 -14699088 - AluSg SINE Alu -9 301 1 198 0 0 0 chr13 105045858 105045880 -14699018 + (A)n Simple_repeat Simple_repeat 1 22 0 210 71 0 0 chr13 105049931 105049959 -14694939 + (T)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr13 105051697 105051720 -14693178 + AT_rich Low_complexity Low_complexity 1 23 0 200 182 0 0 chr13 105053484 105053517 -14691381 + CT-rich Low_complexity Low_complexity 1 33 0 200 163 23 0 chr13 105053518 105053561 -14691337 + T-rich Low_complexity Low_complexity 3 46 0 183 80 0 0 chr13 105056983 105057008 -14687890 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr13 105060414 105060435 -14684463 + AT_rich Low_complexity Low_complexity 1 21 0 216 97 0 0 chr13 105060696 105060727 -14684171 + (TCC)n Simple_repeat Simple_repeat 3 33 0 1423 167 33 49 chr13 105061567 105061896 -14683002 - MER33 DNA MER1_type 0 324 1 1484 113 0 0 chr13 105064622 105064816 -14680082 - AluSx SINE Alu -17 295 102 884 107 16 0 chr13 105064918 105065040 -14679858 - AluSx SINE Alu -188 124 1 2137 136 3 0 chr13 105065135 105065443 -14679455 + AluSx SINE Alu 1 309 -3 384 169 14 0 chr13 105068980 105069062 -14675836 + L1ME2 LINE L1 6081 6166 0 243 150 0 0 chr13 105069053 105069093 -14675805 + L1MC4 LINE L1 6347 6386 -1656 * 401 179 28 47 chr13 105069358 105069464 -14675434 + L1MC5 LINE L1 7831 7934 -27 676 144 42 8 chr13 105069550 105069668 -14675230 - L1MB8 LINE L1 -5 6173 6052 1012 177 12 0 chr13 105069669 105069833 -14675065 + FRAM SINE Alu 1 165 -11 3644 177 24 19 chr13 105069840 105070564 -14674334 - L1MB8 LINE L1 -131 6047 5321 4598 158 20 48 chr13 105070574 105070682 -14674216 - L1MB4 LINE L1 -11 6169 6060 2342 93 20 0 chr13 105070682 105070982 -14673916 - AluSq SINE Alu -7 306 1 4598 158 20 48 chr13 105070982 105072109 -14672789 - L1MB4 LINE L1 -120 6060 4959 1768 164 0 10 chr13 105072551 105072843 -14672055 - AluJo SINE Alu -23 289 1 2137 131 3 0 chr13 105072910 105073216 -14671682 - AluSx SINE Alu -5 307 1 291 54 0 0 chr13 105074083 105074120 -14670778 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 712 84 0 0 chr13 105075691 105075786 -14669112 + AluY SINE Alu 210 304 -7 523 200 0 9 chr13 105075900 105076010 -14668888 - FAM SINE Alu -4 181 73 232 252 101 65 chr13 105077684 105077823 -14667075 - MIR SINE MIR -42 220 77 241 152 45 76 chr13 105077898 105077964 -14666934 + LTR67 LTR ERVL 447 510 -47 2327 104 0 0 chr13 105078171 105078468 -14666430 + AluSx SINE Alu 1 297 -15 481 271 157 37 chr13 105078503 105078802 -14666096 - L2 LINE L2 -1 3312 2978 233 220 20 0 chr13 105078830 105078880 -14666018 - L1ME LINE L1 -454 5667 5617 461 231 50 25 chr13 105078929 105079089 -14665809 + MIR SINE MIR 25 188 -74 760 228 0 0 chr13 105079153 105079302 -14665596 - FAM SINE Alu -26 159 11 806 214 57 98 chr13 105079636 105079955 -14664943 + MER39 LTR ERV1 1 332 -375 2299 115 0 6 chr13 105079955 105080269 -14664629 + AluSx SINE Alu 1 312 0 806 214 57 98 chr13 105080269 105080373 -14664525 + MER39 LTR ERV1 332 439 -268 2289 105 7 0 chr13 105080373 105080678 -14664220 + AluSx SINE Alu 1 307 -5 806 214 57 98 chr13 105080678 105080779 -14664119 + MER39 LTR ERV1 439 705 -2 2113 134 26 3 chr13 105081292 105081597 -14663301 - AluJb SINE Alu 0 312 1 855 150 0 0 chr13 105081616 105081743 -14663155 - FLAM_C SINE Alu -16 127 1 605 73 44 88 chr13 105082049 105082186 -14662712 + L1MA2 LINE L1 5962 6092 -212 1688 93 58 25 chr13 105082305 105082583 -14662315 + L1MA2 LINE L1 6018 6304 0 182 281 91 74 chr13 105082770 105082891 -14662007 - L3 LINE CR1 -3 1574 1452 199 374 39 44 chr13 105082893 105083075 -14661823 - L3 LINE CR1 -299 1278 1098 2429 73 0 13 chr13 105083324 105083625 -14661273 + AluY SINE Alu 1 297 -14 195 219 260 0 chr13 105083808 105083881 -14661017 + MIR3 SINE MIR 113 204 -4 1791 179 0 13 chr13 105084796 105085097 -14659801 - AluJb SINE Alu -15 297 1 2195 27 4 0 chr13 105085210 105085467 -14659431 - L1PA4 LINE L1 0 6155 5898 222 213 0 21 chr13 105086534 105086581 -14658317 - L2 LINE L2 -38 3275 3230 686 234 158 56 chr13 105086641 105087063 -14657835 + MLT1J LTR MaLR 1 495 -16 2121 114 3 41 chr13 105088263 105088579 -14656319 + AluSc SINE Alu 1 304 -5 2441 87 7 3 chr13 105088922 105089231 -14655667 + AluSq SINE Alu 1 310 -3 303 93 0 0 chr13 105089231 105089274 -14655624 + (TA)n Simple_repeat Simple_repeat 2 44 0 189 154 15 62 chr13 105089363 105089428 -14655470 + T-rich Low_complexity Low_complexity 2 63 0 201 74 0 0 chr13 105090675 105090702 -14654196 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1128 89 57 0 chr13 105090702 105090859 -14654039 - L1PA10 LINE L1 -5 6163 5998 1104 194 99 91 chr13 105090966 105091441 -14653457 - MLT1D LTR MaLR 0 505 27 250 323 39 16 chr13 105091666 105091793 -14653105 - L3 LINE CR1 -1 1576 1447 313 309 86 19 chr13 105092070 105092232 -14652666 - MIR3 SINE MIR -7 201 29 1914 187 33 28 chr13 105095777 105096172 -14648726 - MLT2C1 LTR ERVL 0 397 1 455 282 62 20 chr13 105096835 105097030 -14647868 - MIR SINE MIR -2 260 58 837 275 128 27 chr13 105098171 105098545 -14646353 + HAL1 LINE L1 1616 2027 -480 * 1719 134 63 46 chr13 105098544 105098895 -14646003 + L1MC2 LINE L1 5751 6107 -237 698 190 0 33 chr13 105098898 105099019 -14645879 + FLAM_A SINE Alu 1 117 -16 1063 225 148 13 chr13 105099118 105099504 -14645394 + HAL1 LINE L1 2020 2457 -50 660 211 80 49 chr13 105099988 105100224 -14644674 - MLT1H1 LTR MaLR 0 548 286 231 238 16 0 chr13 105100340 105100403 -14644495 - MLT1F LTR MaLR -459 83 20 240 298 67 10 chr13 105100895 105100999 -14643899 - L2 LINE L2 -31 3282 3173 2875 168 30 16 chr13 105102288 105102793 -14642105 + MLT2B2 LTR ERVL 2 513 -2 468 0 0 0 chr13 105102794 105102846 -14642052 + (TA)n Simple_repeat Simple_repeat 1 52 0 1858 132 38 28 chr13 105102910 105103199 -14641699 - AluJo SINE Alu -20 292 1 283 319 42 7 chr13 105103345 105103489 -14641409 + L1ME4a LINE L1 5774 5922 -199 1005 301 81 8 chr13 105103672 105103768 -14641130 - MLT1J1 LTR MaLR -21 425 337 378 42 0 0 chr13 105103768 105103816 -14641082 + (TG)n Simple_repeat Simple_repeat 2 49 0 1005 301 81 8 chr13 105103816 105104115 -14640783 - MLT1J1 LTR MaLR -109 337 1 336 136 12 25 chr13 105104175 105104256 -14640642 + CT-rich Low_complexity Low_complexity 1 80 0 1931 150 3 3 chr13 105104256 105104542 -14640356 - AluJb SINE Alu -26 286 1 2618 49 10 0 chr13 105104578 105104886 -14640012 - AluY SINE Alu 0 311 1 395 111 0 14 chr13 105104927 105104999 -14639899 + (TCTCC)n Simple_repeat Simple_repeat 2 72 0 2252 154 20 0 chr13 105105414 105105771 -14639127 - MLT1A1 LTR MaLR -1 364 1 38 22 0 0 chr13 105106334 105106379 -14638519 + AT_rich Low_complexity Low_complexity 1 45 0 1978 121 32 7 chr13 105106379 105106659 -14638239 - AluSx SINE Alu -25 287 1 964 163 4 117 chr13 105106661 105106901 -14637997 - AluJo SINE Alu -13 299 87 1729 166 22 4 chr13 105107234 105107512 -14637386 - AluJo SINE Alu -27 285 3 1783 180 3 20 chr13 105107517 105107822 -14637076 - AluJb SINE Alu -12 300 1 532 274 16 83 chr13 105108511 105108763 -14636135 - MIR SINE MIR -27 235 1 391 282 141 24 chr13 105109652 105109822 -14635076 - MIR3 SINE MIR -3 205 16 658 245 64 5 chr13 105110006 105110283 -14634615 - MER46C DNA MER2_type -8 330 5 229 351 101 13 chr13 105111517 105111833 -14633065 + L2 LINE L2 2633 2976 -338 195 395 23 8 chr13 105112028 105112157 -14632741 + L2 LINE L2 3134 3264 -8 33 56 0 0 chr13 105113043 105113097 -14631801 + AT_rich Low_complexity Low_complexity 1 54 0 1821 167 3 3 chr13 105113877 105114188 -14630710 + AluJo SINE Alu 1 311 -1 1873 176 130 32 chr13 105114445 105114883 -14630015 - L1MB2 LINE L1 -4 6167 5687 472 309 56 28 chr13 105115543 105115792 -14629106 - MIR SINE MIR -4 258 3 389 315 17 58 chr13 105116035 105116349 -14628549 + L1MC/D LINE L1 5551 5836 -430 243 223 64 53 chr13 105116565 105116659 -14628239 + MIR SINE MIR 148 242 -20 3647 141 19 0 chr13 105116919 105117507 -14627391 + L1MB3 LINE L1 5574 6172 -11 198 330 147 5 chr13 105118092 105118289 -14626609 - L3 LINE CR1 -173 1404 1180 280 297 36 0 chr13 105118583 105118694 -14626204 - MIR SINE MIR -30 232 118 307 229 173 39 chr13 105118772 105118951 -14625947 - MLT1L LTR MaLR -4 611 409 404 125 62 0 chr13 105119929 105119993 -14624905 + MLT1A2 LTR MaLR 1 68 -306 970 192 28 16 chr13 105120010 105120192 -14624706 + MLT1A2 LTR MaLR 189 372 -2 2410 86 3 0 chr13 105120224 105120528 -14624370 - AluSp SINE Alu -8 305 1 2304 108 0 6 chr13 105121357 105121671 -14623227 - AluSx SINE Alu 0 312 1 603 267 90 71 chr13 105121680 105122114 -14622784 - MLT1K LTR MaLR -51 537 96 249 83 0 0 chr13 105122858 105122894 -14622004 + (TG)n Simple_repeat Simple_repeat 2 37 0 216 182 0 0 chr13 105122904 105122948 -14621950 + (TA)n Simple_repeat Simple_repeat 2 45 0 282 29 0 0 chr13 105124671 105124706 -14620192 + (CA)n Simple_repeat Simple_repeat 2 36 0 238 238 0 88 chr13 105125240 105125320 -14619578 - L2 LINE L2 -3 3269 3197 878 211 5 35 chr13 105125625 105125824 -14619074 + MIR SINE MIR 60 252 -10 1910 176 0 0 chr13 105126589 105126891 -14618007 - AluJb SINE Alu -10 302 1 1962 160 0 0 chr13 105127373 105127681 -14617217 + AluSx SINE Alu 3 310 0 2160 107 3 3 chr13 105127960 105128251 -14616647 - AluSx SINE Alu -21 291 1 21 57 0 0 chr13 105128781 105128816 -14616082 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr13 105129321 105129356 -14615542 + (TG)n Simple_repeat Simple_repeat 2 36 0 544 259 41 78 chr13 105130673 105130916 -14613982 - MIR SINE MIR -21 241 8 927 285 28 3 chr13 105131458 105131749 -14613149 + HAL1 LINE L1 1679 1976 -531 29654 45 4 2 chr13 105131765 105136183 -14608715 + HAL1b LINE L1 370 6154 0 931 263 108 42 chr13 105136190 105136495 -14608403 + HAL1 LINE L1 2013 2359 -148 2247 99 0 7 chr13 105136495 105136787 -14608111 + AluSg1 SINE Alu 2 291 -18 931 263 108 42 chr13 105136787 105136933 -14607965 + HAL1 LINE L1 2359 2494 -13 1379 152 0 22 chr13 105136962 105137193 -14607705 + AluJo SINE Alu 87 312 0 1987 136 0 10 chr13 105137197 105137499 -14607399 + AluSx SINE Alu 1 299 -13 2283 109 6 0 chr13 105137636 105137947 -14606951 + AluSq SINE Alu 1 313 0 296 321 58 47 chr13 105138102 105138232 -14606666 + L1MEd LINE L1 569 703 -5416 470 186 20 20 chr13 105138232 105138334 -14606564 + U13 snRNA snRNA 1 102 -2 296 321 58 47 chr13 105138334 105138393 -14606505 + L1MEd LINE L1 703 760 -5359 2194 82 39 0 chr13 105138645 105138927 -14605971 + AluY SINE Alu 1 293 -18 791 239 43 62 chr13 105138981 105139049 -14605849 + L1MEd LINE L1 895 963 -5156 2250 115 0 13 chr13 105139049 105139363 -14605535 + AluSx SINE Alu 3 312 0 791 239 43 62 chr13 105139363 105139662 -14605236 + L1MEd LINE L1 963 1255 -4864 1857 157 7 4 chr13 105139886 105140166 -14604732 - AluSx SINE Alu -31 281 1 2062 115 0 30 chr13 105140612 105140917 -14603981 + AluSq SINE Alu 1 296 -17 2336 79 0 7 chr13 105140920 105141241 -14603657 + AluY SINE Alu 1 311 0 26 0 0 0 chr13 105141241 105141267 -14603631 + AT_rich Low_complexity Low_complexity 1 26 0 740 298 101 43 chr13 105141347 105141376 -14603522 + L1MEd LINE L1 2117 2143 -3986 2339 100 0 0 chr13 105141376 105141676 -14603222 + AluSx SINE Alu 1 300 -12 740 298 101 43 chr13 105141676 105141714 -14603184 + L1MEd LINE L1 2143 2177 -3952 2175 91 21 7 chr13 105141714 105141999 -14602899 + AluY SINE Alu 1 289 -22 740 298 101 43 chr13 105141999 105142602 -14602296 + L1MEd LINE L1 2177 2827 -3302 459 204 100 16 chr13 105142647 105142887 -14602011 + MER5C DNA MER1_type 4 323 -1 2300 97 10 0 chr13 105142950 105143250 -14601648 + AluSq SINE Alu 1 303 -10 21 107 0 0 chr13 105143430 105143514 -14601384 + AT_rich Low_complexity Low_complexity 1 84 0 297 353 24 34 chr13 105144263 105144470 -14600428 + L3 LINE CR1 65 269 -1308 205 298 0 0 chr13 105144460 105144507 -14600391 + MIR SINE MIR 51 97 -165 * 2410 87 0 0 chr13 105144610 105144908 -14599990 + AluSq SINE Alu 14 311 -2 2004 116 24 14 chr13 105145217 105145510 -14599388 + AluSq SINE Alu 1 296 -17 269 260 55 0 chr13 105145527 105145600 -14599298 + MIR SINE MIR 110 186 -76 301 364 136 0 chr13 105145645 105145843 -14599055 + L3 LINE CR1 581 805 -772 2115 126 0 3 chr13 105145883 105146177 -14598721 - AluSx SINE Alu -19 293 1 216 0 0 0 chr13 105146180 105146204 -14598694 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2535 66 0 3 chr13 105146206 105146508 -14598390 - AluY SINE Alu -10 301 1 1753 170 0 0 chr13 105146581 105146852 -14598046 + AluJo SINE Alu 1 271 -41 291 211 42 0 chr13 105147392 105147463 -14597435 - MIR SINE MIR -108 154 81 1944 152 0 26 chr13 105148133 105148442 -14596456 - AluJo SINE Alu -11 301 1 1983 128 17 41 chr13 105148724 105149069 -14595829 - MER1B DNA MER1_type 0 337 1 2063 139 3 3 chr13 105149672 105149975 -14594923 - AluJb SINE Alu -9 303 1 242 264 136 50 chr13 105150413 105150553 -14594345 + MIR SINE MIR 81 232 -30 568 259 127 0 chr13 105150836 105150994 -14593904 - MER45A DNA AcHobo 0 178 1 1748 166 6 46 chr13 105151043 105151368 -14593530 + AluJb SINE Alu 1 312 0 2185 118 0 0 chr13 105151370 105151657 -14593241 + AluSc SINE Alu 1 287 -22 625 105 0 0 chr13 105151687 105151773 -14593125 + AluSq SINE Alu 2 87 -226 2503 69 0 0 chr13 105151773 105152076 -14592822 + AluY SINE Alu 1 303 -8 1712 93 4 32 chr13 105152076 105152322 -14592576 + AluSq SINE Alu 73 313 0 7121 130 45 25 chr13 105152968 105153577 -14591321 + L1M4c LINE L1 16 612 -5772 2209 118 3 6 chr13 105153577 105153890 -14591008 + AluSx SINE Alu 1 312 0 2241 116 3 3 chr13 105153897 105154207 -14590691 + AluSg SINE Alu 1 310 0 7121 130 45 25 chr13 105154207 105154815 -14590083 + L1M4c LINE L1 617 1265 -5119 2291 113 3 0 chr13 105154970 105155272 -14589626 + AluSq SINE Alu 1 303 -10 1223 229 0 30 chr13 105155926 105156223 -14588675 + MER1B DNA MER1_type 1 288 -51 341 50 0 0 chr13 105156365 105156434 -14588464 + Alu SINE Alu 245 313 0 321 262 49 77 chr13 105156514 105156656 -14588242 - L1M4 LINE L1 -3478 2668 2531 2116 120 10 0 chr13 105156656 105156948 -14587950 + AluSx SINE Alu 1 295 -17 321 262 49 77 chr13 105156948 105156988 -14587910 - L1M4 LINE L1 -3615 2531 2491 2512 74 0 0 chr13 105157482 105157793 -14587105 + AluY SINE Alu 1 311 0 208 167 26 39 chr13 105158115 105158193 -14586705 + (CCCA)n Simple_repeat Simple_repeat 3 79 0 223 96 39 0 chr13 105158211 105158263 -14586635 + (CCCA)n Simple_repeat Simple_repeat 1 54 0 1009 252 23 0 chr13 105158379 105158637 -14586261 + L1M4 LINE L1 3760 4023 -2123 2329 95 0 0 chr13 105158637 105158933 -14585965 + AluSg SINE Alu 1 296 -14 1661 188 26 26 chr13 105158942 105159250 -14585648 + AluJb SINE Alu 1 308 -4 2318 253 89 65 chr13 105159250 105159346 -14585552 + L1MEc LINE L1 710 802 -5594 2186 132 3 0 chr13 105159346 105159650 -14585248 + AluSx SINE Alu 1 305 -7 2318 253 89 65 chr13 105159650 105159791 -14585107 + L1MEc LINE L1 802 938 -5458 2135 121 0 29 chr13 105159791 105160106 -14584792 + AluSx SINE Alu 1 306 -6 2318 253 89 65 chr13 105160106 105160557 -14584341 + L1MEc LINE L1 938 1377 -5019 1913 151 0 10 chr13 105160557 105160849 -14584049 + AluJb SINE Alu 3 291 -21 2459 69 13 25 chr13 105160849 105161166 -14583732 + AluSp SINE Alu 1 313 0 2318 253 89 65 chr13 105161166 105161964 -14582934 + L1MEc LINE L1 1376 2238 -4158 234 159 91 0 chr13 105161966 105162003 -14582895 - Alu SINE Alu -15 285 245 2170 99 23 3 chr13 105162003 105162306 -14582592 - MER1A DNA MER1_type 0 529 221 316 238 0 0 chr13 105162310 105162373 -14582525 - AluJb SINE Alu -115 187 125 354 170 50 30 chr13 105162373 105162473 -14582425 + L1MEc LINE L1 2350 2451 -3764 2293 95 0 0 chr13 105162473 105162805 -14582093 + AluSx SINE Alu 1 332 0 299 91 0 0 chr13 105162856 105162900 -14581998 + MER2 DNA MER2_type 162 205 -140 400 259 25 62 chr13 105162918 105163080 -14581818 - Charlie8 DNA MER1_type -2236 181 26 1603 167 0 37 chr13 105163309 105163638 -14581260 - AluJo SINE Alu 0 318 1 207 0 0 0 chr13 105163887 105163910 -14580988 + (T)n Simple_repeat Simple_repeat 1 23 0 770 207 134 26 chr13 105163957 105164189 -14580709 + MIR SINE MIR 4 260 -2 2142 107 0 0 chr13 105164208 105164511 -14580387 - AluSx SINE Alu 0 307 5 2489 57 0 3 chr13 105165142 105165439 -14579459 - AluY SINE Alu -15 296 1 2318 98 7 0 chr13 105165444 105165749 -14579149 - AluSp SINE Alu -6 307 1 1009 312 87 41 chr13 105165863 105165924 -14578974 - LTR67 LTR ERVL -23 534 477 1885 157 3 0 chr13 105165924 105166218 -14578680 + AluJb SINE Alu 1 295 -17 1009 312 87 41 chr13 105166218 105166663 -14578235 - LTR67 LTR ERVL -80 477 5 236 314 23 0 chr13 105166682 105166768 -14578130 + MER5C DNA MER1_type 13 100 -224 231 307 0 0 chr13 105166805 105166880 -14578018 - MER5C DNA MER1_type -244 80 6 431 231 127 35 chr13 105166906 105167000 -14577898 + MER58C DNA MER1_type 27 111 -2309 2394 76 0 0 chr13 105167000 105167291 -14577607 + AluY SINE Alu 1 291 -20 431 231 127 35 chr13 105167291 105167369 -14577529 + MER58C DNA MER1_type 111 215 0 731 119 0 0 chr13 105167459 105167560 -14577338 - AluSg/x SINE Alu -14 295 195 2689 55 9 0 chr13 105167560 105167888 -14577010 - LTR10C LTR ERV1 0 591 261 35894 92 45 36 chr13 105167888 105174229 -14570669 + Harlequin LTR ERV1 17 4944 0 800 118 196 12 chr13 105174230 105174485 -14570413 + Harlequin LTR ERV1 840 1141 -5755 * 6834 87 7 1 chr13 105174481 105175484 -14569414 + Harlequin LTR ERV1 504 8399 0 2130 28 16 0 chr13 105175484 105175735 -14569163 - LTR10C LTR ERV1 -328 263 9 2491 61 0 3 chr13 105175736 105176033 -14568865 - AluY SINE Alu -13 298 3 979 124 0 0 chr13 105176034 105176171 -14568727 - AluSq/x SINE Alu -175 137 1 1965 160 7 0 chr13 105176212 105176519 -14568379 - AluSx SINE Alu -3 309 1 468 274 85 6 chr13 105176539 105176703 -14568195 - MLT1J2 LTR MaLR 0 450 274 431 298 24 54 chr13 105176713 105176918 -14567980 - MLT1J2 LTR MaLR -224 222 24 2298 97 0 0 chr13 105176977 105177275 -14567623 - AluSg SINE Alu -12 298 1 1049 279 36 34 chr13 105177365 105177752 -14567146 - MLT1J LTR MaLR -33 478 91 561 255 51 6 chr13 105177786 105177943 -14566955 - MLT1J LTR MaLR -347 164 1 532 259 36 16 chr13 105178318 105178511 -14566387 + L1MC5 LINE L1 7723 7919 -42 244 250 259 17 chr13 105178540 105178656 -14566242 + MIR SINE MIR 37 180 -82 2215 86 7 13 chr13 105178719 105179020 -14565878 - AluSx SINE Alu -13 299 1 195 276 17 0 chr13 105179092 105179150 -14565748 - MIR SINE MIR -120 88 30 22 0 0 0 chr13 105180659 105180681 -14564217 + AT_rich Low_complexity Low_complexity 1 22 0 235 286 44 0 chr13 105180697 105180788 -14564110 - MIR3 SINE MIR 0 208 114 547 236 185 15 chr13 105181277 105181472 -14563426 - MIR SINE MIR -29 233 6 200 321 139 21 chr13 105181552 105181789 -14563109 - L2 LINE L2 -339 2975 2711 261 283 193 32 chr13 105182446 105182474 -14562424 - MIR SINE MIR -15 247 225 2035 101 27 17 chr13 105182474 105182771 -14562127 - AluSc SINE Alu -5 304 5 261 283 193 32 chr13 105182771 105182929 -14561969 - MIR SINE MIR -37 225 31 1587 161 0 39 chr13 105182931 105183210 -14561688 - AluJo SINE Alu -1 311 44 1675 147 41 48 chr13 105184191 105184324 -14560574 + AluJb SINE Alu 1 133 -179 216 0 0 0 chr13 105184324 105184348 -14560550 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1675 147 41 48 chr13 105184348 105184506 -14560392 + AluJb SINE Alu 133 290 -22 2471 91 3 0 chr13 105184508 105184817 -14560081 + AluSp SINE Alu 3 312 -1 1271 199 5 95 chr13 105184817 105185189 -14559709 + L1MC4 LINE L1 7545 7904 -91 2473 83 0 0 chr13 105185189 105185491 -14559407 + AluY SINE Alu 1 302 -9 1271 199 5 95 chr13 105185491 105185576 -14559322 + L1MC4 LINE L1 7904 7995 0 246 320 90 34 chr13 105185696 105185874 -14559024 - L1ME3A LINE L1 -21 6149 5962 527 280 30 61 chr13 105185928 105186108 -14558790 - L1ME3A LINE L1 -207 5963 5793 2196 96 7 0 chr13 105186108 105186424 -14558474 - AluSp SINE Alu 0 318 1 527 280 30 61 chr13 105186424 105186538 -14558360 - L1ME3A LINE L1 -377 5793 5677 321 263 153 78 chr13 105186564 105186872 -14558026 - L1ME3A LINE L1 -2158 3988 3658 1215 118 0 0 chr13 105187169 105187330 -14557568 + AluSg/x SINE Alu 135 295 -15 1383 161 0 0 chr13 105188614 105188831 -14556067 - MER20 DNA MER1_type -1 218 2 756 157 8 22 chr13 105188967 105189101 -14555797 + FLAM_A SINE Alu 1 132 -1 366 274 57 87 chr13 105189116 105189446 -14555452 + L1MC4 LINE L1 7249 7566 -476 2398 94 0 0 chr13 105189446 105189743 -14555155 + AluSg SINE Alu 1 297 -13 366 274 57 87 chr13 105189743 105189813 -14555085 + L1MC4 LINE L1 7566 7637 -405 482 156 0 22 chr13 105189845 105189935 -14554963 - FLAM_A SINE Alu -1 141 54 2159 102 10 0 chr13 105189980 105190273 -14554625 + AluSq SINE Alu 1 296 -17 1105 131 6 6 chr13 105190368 105190528 -14554370 + AluSg SINE Alu 1 160 -150 339 89 19 16 chr13 105190630 105190696 -14554202 - FLAM_A SINE Alu -83 50 1 2207 119 0 7 chr13 105190748 105191050 -14553848 + AluSx SINE Alu 1 300 -12 275 85 0 0 chr13 105191055 105191102 -14553796 - L1MB3 LINE L1 0 6183 6137 849 166 0 26 chr13 105191104 105191255 -14553643 - L1M3 LINE L1 -538 5642 5496 1825 185 7 0 chr13 105191255 105191552 -14553346 - AluJb SINE Alu -13 299 1 389 174 50 116 chr13 105191553 105191615 -14553283 - MER106B DNA MER1_type -50 1009 957 2267 107 3 3 chr13 105191615 105191923 -14552975 - AluSp SINE Alu -5 308 1 389 174 50 116 chr13 105191923 105191981 -14552917 - MER106B DNA MER1_type -102 957 897 2209 130 0 3 chr13 105192007 105192314 -14552584 + AluSx SINE Alu 1 306 -6 2281 107 0 22 chr13 105192522 105192839 -14552059 - AluSx SINE Alu -2 310 1 2584 127 65 2 chr13 105192958 105193361 -14551537 - MSTA LTR MaLR 0 428 1 2126 112 21 0 chr13 105193655 105193942 -14550956 + AluSq SINE Alu 1 293 -20 542 182 10 10 chr13 105194130 105194229 -14550669 - MER4D LTR ERV1 -1 902 804 238 180 0 0 chr13 105194230 105194280 -14550618 + LTR28 LTR ERV1 1 50 -970 * 2098 132 56 70 chr13 105194260 105194308 -14550590 + MER61C LTR ERV1 15 62 -372 1858 141 20 10 chr13 105194308 105194613 -14550285 - AluJb SINE Alu -1 311 4 2098 132 56 70 chr13 105194613 105194990 -14549908 + MER61C LTR ERV1 62 434 0 4642 135 20 55 chr13 105194990 105195825 -14549073 - MER4D LTR ERV1 -97 806 1 2291 70 7 11 chr13 105196176 105196486 -14548412 + AluSp SINE Alu 1 309 0 1967 160 3 0 chr13 105196509 105196815 -14548083 + AluJb SINE Alu 1 307 -5 1163 220 46 49 chr13 105197017 105197195 -14547703 - L1ME3A LINE L1 -14 6156 5978 2252 123 0 0 chr13 105197195 105197495 -14547403 - AluSq SINE Alu -13 300 1 1163 220 46 49 chr13 105197495 105197643 -14547255 - L1ME3A LINE L1 -192 5978 5831 880 186 18 32 chr13 105197657 105197878 -14547020 - L1MC5 LINE L1 -48 7913 7696 21 0 0 0 chr13 105197980 105198001 -14546897 + AT_rich Low_complexity Low_complexity 1 21 0 820 150 88 25 chr13 105198159 105198319 -14546579 - AluSp SINE Alu -12 301 132 1753 142 75 0 chr13 105198353 105198620 -14546278 + AluSx SINE Alu 6 292 -20 2339 101 0 10 chr13 105198661 105198968 -14545930 + AluSx SINE Alu 1 304 -8 1051 83 0 0 chr13 105199056 105199188 -14545710 + AluSg SINE Alu 3 134 -176 2254 103 0 7 chr13 105199188 105199488 -14545410 + AluSq SINE Alu 1 298 -15 2652 58 0 0 chr13 105199490 105199800 -14545098 + AluY SINE Alu 1 310 -1 1317 192 23 26 chr13 105199816 105199973 -14544925 - MER34 LTR ERV1 -277 265 108 2259 101 0 29 chr13 105199973 105200280 -14544618 + AluSx SINE Alu 1 298 -14 1317 192 23 26 chr13 105200280 105200388 -14544510 - MER34 LTR ERV1 -434 108 1 331 250 0 0 chr13 105200388 105200460 -14544438 - L1MC4a LINE L1 -1120 6688 6617 2373 91 0 3 chr13 105200543 105200852 -14544046 + AluSp SINE Alu 6 313 0 237 171 0 0 chr13 105200972 105201013 -14543885 + MLT1I LTR MaLR 103 143 -266 226 292 22 11 chr13 105201219 105201308 -14543590 + MLT1H LTR MaLR 444 533 -16 382 296 131 48 chr13 105201380 105201778 -14543120 - L1MC4a LINE L1 -1334 6474 6044 1554 209 40 71 chr13 105201820 105201900 -14542998 - MER74B LTR ERVL 0 622 541 1613 101 27 0 chr13 105201900 105202119 -14542779 - AluSc SINE Alu -19 290 66 2351 103 0 0 chr13 105202119 105202420 -14542478 - AluY SINE Alu -8 303 2 1554 209 40 71 chr13 105202420 105202788 -14542110 - MER74B LTR ERVL -79 543 187 1641 137 79 4 chr13 105202793 105203071 -14541827 + AluSq SINE Alu 2 300 -13 265 98 24 0 chr13 105203071 105203112 -14541786 + (GA)n Simple_repeat Simple_repeat 1 42 0 373 116 29 0 chr13 105203114 105203183 -14541715 + GA-rich Low_complexity Low_complexity 3 73 0 721 149 0 16 chr13 105203187 105203308 -14541590 - MER74B LTR ERVL -442 180 62 752 227 78 7 chr13 105203312 105203466 -14541432 + MER21B LTR ERV1 330 494 -369 2120 99 42 0 chr13 105203508 105203791 -14541107 + AluSq SINE Alu 1 295 -18 297 130 58 0 chr13 105204080 105204149 -14540749 + CT-rich Low_complexity Low_complexity 4 76 0 405 237 17 34 chr13 105204150 105204268 -14540630 - FAM SINE Alu 0 185 70 312 262 41 69 chr13 105204304 105204449 -14540449 - L1MC4a LINE L1 -1987 5821 5681 6297 133 16 19 chr13 105204520 105204909 -14539989 - L1PB1 LINE L1 -1 6150 5761 2227 117 0 3 chr13 105204909 105205209 -14539689 - AluSp SINE Alu -14 299 1 6297 133 16 19 chr13 105205209 105206409 -14538489 - L1PB1 LINE L1 -390 5761 4569 605 233 23 29 chr13 105207806 105207978 -14536920 - L1MC4a LINE L1 -1854 5954 5784 391 125 0 0 chr13 105208685 105208741 -14536157 + AluJ/FLAM SINE Alu 2 57 -245 466 326 53 21 chr13 105208837 105209214 -14535684 + L1MC4a LINE L1 4423 4811 -1335 2204 113 7 7 chr13 105209284 105209585 -14535313 - AluSx SINE Alu -11 301 1 1059 141 0 12 chr13 105209648 105209811 -14535087 + AluSp SINE Alu 133 293 -20 252 261 0 0 chr13 105209981 105210050 -14534848 + (TA)n Simple_repeat Simple_repeat 1 69 0 2004 100 74 0 chr13 105210053 105210324 -14534574 - AluSq SINE Alu -22 291 1 1658 154 46 34 chr13 105210455 105210806 -14534092 + L1MB7 LINE L1 5814 6168 -16 2171 98 11 0 chr13 105210806 105211091 -14533807 + AluSg SINE Alu 3 290 -20 327 179 0 0 chr13 105211093 105211160 -14533738 + (TA)n Simple_repeat Simple_repeat 1 67 0 2035 126 27 3 chr13 105211203 105211497 -14533401 + AluSq SINE Alu 1 301 -12 364 262 8 16 chr13 105211509 105211635 -14533263 + L1MC4a LINE L1 5304 5428 -2380 990 103 0 83 chr13 105211701 105211755 -14533143 - Tigger3(Golem) DNA MER2_type 0 3029 2972 2235 103 0 13 chr13 105211755 105212056 -14532842 + AluSx SINE Alu 1 297 -15 990 103 0 83 chr13 105212056 105212157 -14532741 - Tigger3(Golem) DNA MER2_type -57 2972 2887 309 211 18 0 chr13 105212155 105212212 -14532686 - Tigger3(Golem) DNA MER2_type -2971 58 1 * 1390 149 41 4 chr13 105212212 105212454 -14532444 - MER2 DNA MER2_type -62 283 33 390 268 80 84 chr13 105212497 105212747 -14532151 + LTR40a LTR ERVL 1 287 -213 259 98 0 24 chr13 105212745 105212786 -14532112 + LTR40b LTR ERVL 419 458 -4 * 1203 229 20 70 chr13 105212787 105213132 -14531766 + L1MC4a LINE L1 5463 5790 -2018 426 241 103 67 chr13 105213213 105213466 -14531432 + L1MC4a LINE L1 6050 6311 -1497 337 298 0 0 chr13 105213575 105213659 -14531239 + MER63 DNA MER1_type 977 1060 0 928 257 37 85 chr13 105213718 105214002 -14530896 - MER110-int LTR ERV1 -1541 3106 2810 1573 176 33 26 chr13 105214002 105214304 -14530594 + AluJo SINE Alu 1 304 -8 928 257 37 85 chr13 105214304 105214450 -14530448 - MER110-int LTR ERV1 -1837 2810 2699 1209 191 0 118 chr13 105214450 105214790 -14530108 - AluJo SINE Alu -2 300 1 928 257 37 85 chr13 105214790 105214841 -14530057 - MER110-int LTR ERV1 -1948 2699 2647 1504 140 23 8 chr13 105214863 105215128 -14529770 + L1MB3 LINE L1 5908 6176 -7 479 205 0 0 chr13 105215271 105215354 -14529544 + AluJ/FLAM SINE Alu 2 84 -228 312 335 46 7 chr13 105215503 105215564 -14529334 + L1MC4 LINE L1 7003 7060 -982 288 77 0 0 chr13 105215564 105215603 -14529295 + (TG)n Simple_repeat Simple_repeat 1 39 0 312 335 46 7 chr13 105215603 105215693 -14529205 + L1MC4 LINE L1 7060 7160 -882 2402 98 3 0 chr13 105215693 105216000 -14528898 + AluSq SINE Alu 1 308 -5 2394 64 3 0 chr13 105216028 105216359 -14528539 + AluSx SINE Alu 1 332 0 299 91 0 0 chr13 105216410 105216454 -14528444 + MER2 DNA MER2_type 162 205 -140 352 272 25 62 chr13 105216472 105216634 -14528264 - Charlie8 DNA MER1_type -2236 181 26 1586 170 0 37 chr13 105216863 105217192 -14527706 - AluJo SINE Alu 0 318 1 207 0 0 0 chr13 105217441 105217464 -14527434 + (T)n Simple_repeat Simple_repeat 1 23 0 770 207 134 26 chr13 105217511 105217743 -14527155 + MIR SINE MIR 4 260 -2 2388 92 0 0 chr13 105217762 105218067 -14526831 - AluSx SINE Alu -3 309 5 2489 57 0 3 chr13 105218698 105218995 -14525903 - AluY SINE Alu -15 296 1 2318 98 7 0 chr13 105219000 105219305 -14525593 - AluSp SINE Alu -6 307 1 1009 312 87 41 chr13 105219419 105219480 -14525418 - LTR67 LTR ERVL -23 534 477 1885 157 3 0 chr13 105219480 105219774 -14525124 + AluJb SINE Alu 1 295 -17 1009 312 87 41 chr13 105219774 105220219 -14524679 - LTR67 LTR ERVL -80 477 5 236 314 23 0 chr13 105220238 105220324 -14524574 + MER5C DNA MER1_type 13 100 -224 231 307 0 0 chr13 105220361 105220436 -14524462 - MER5C DNA MER1_type -244 80 6 431 231 127 35 chr13 105220462 105220556 -14524342 + MER58C DNA MER1_type 27 111 -2309 2394 76 0 0 chr13 105220556 105220847 -14524051 + AluY SINE Alu 1 291 -20 431 231 127 35 chr13 105220847 105220925 -14523973 + MER58C DNA MER1_type 111 215 0 731 119 0 0 chr13 105221015 105221116 -14523782 - AluSg/x SINE Alu -14 295 195 2689 55 9 0 chr13 105221116 105221444 -14523454 - LTR10C LTR ERV1 0 591 261 35894 92 45 36 chr13 105221444 105227785 -14517113 + Harlequin LTR ERV1 17 4944 0 800 118 196 12 chr13 105227786 105228041 -14516857 + Harlequin LTR ERV1 840 1141 -5755 * 6834 87 7 1 chr13 105228037 105229040 -14515858 + Harlequin LTR ERV1 504 8399 0 2130 28 16 0 chr13 105229040 105229291 -14515607 - LTR10C LTR ERV1 -328 263 9 2491 61 0 3 chr13 105229292 105229589 -14515309 - AluY SINE Alu -13 298 3 979 124 0 0 chr13 105229590 105229727 -14515171 - AluSq/x SINE Alu -175 137 1 1965 160 7 0 chr13 105229768 105230075 -14514823 - AluSx SINE Alu -3 309 1 468 274 85 6 chr13 105230095 105230259 -14514639 - MLT1J2 LTR MaLR 0 450 274 431 298 24 54 chr13 105230269 105230474 -14514424 - MLT1J2 LTR MaLR -224 222 24 2298 97 0 0 chr13 105230533 105230831 -14514067 - AluSg SINE Alu -12 298 1 1049 279 36 34 chr13 105230921 105231308 -14513590 - MLT1J LTR MaLR -33 478 91 561 255 51 6 chr13 105231342 105231499 -14513399 - MLT1J LTR MaLR -347 164 1 532 259 36 16 chr13 105231874 105232067 -14512831 + L1MC5 LINE L1 7723 7919 -42 244 250 259 17 chr13 105232096 105232212 -14512686 + MIR SINE MIR 37 180 -82 2227 83 7 13 chr13 105232275 105232576 -14512322 - AluSx SINE Alu -13 299 1 195 276 17 0 chr13 105232648 105232706 -14512192 - MIR SINE MIR -120 88 30 261 283 193 32 chr13 105234890 105234918 -14509980 - MIR SINE MIR -15 247 225 2035 101 27 17 chr13 105234918 105235215 -14509683 - AluSc SINE Alu -5 304 5 261 283 193 32 chr13 105235215 105235373 -14509525 - MIR SINE MIR -37 225 31 1587 161 0 39 chr13 105235375 105235654 -14509244 - AluJo SINE Alu -1 311 44 1675 147 41 48 chr13 105236635 105236768 -14508130 + AluJb SINE Alu 1 133 -179 216 0 0 0 chr13 105236768 105236792 -14508106 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1675 147 41 48 chr13 105236792 105236950 -14507948 + AluJb SINE Alu 133 290 -22 2537 73 3 0 chr13 105236952 105237254 -14507644 + AluSp SINE Alu 3 305 -8 2157 113 10 0 chr13 105237599 105237891 -14507007 - AluSx SINE Alu -17 295 1 591 300 110 43 chr13 105237902 105237921 -14506977 - L2 LINE L2 -2 3311 3295 1091 204 206 53 chr13 105237921 105238353 -14506545 - MLT1D LTR MaLR -4 501 4 591 300 110 43 chr13 105238353 105239093 -14505805 - L2 LINE L2 -18 3295 2494 4819 127 77 19 chr13 105239102 105239907 -14504991 + Tigger1 DNA MER2_type 1 852 -1566 857 96 0 0 chr13 105239910 105240014 -14504884 + AluSc SINE Alu 1 104 -205 239 88 0 0 chr13 105240014 105240048 -14504850 + Tigger1 DNA MER2_type 2189 2222 -196 1409 158 18 21 chr13 105240145 105240424 -14504474 + L1MB7 LINE L1 5888 6165 -19 2296 89 7 0 chr13 105240443 105240735 -14504163 + AluSx SINE Alu 3 296 -16 1560 156 0 46 chr13 105240775 105241038 -14503860 + AluJo SINE Alu 43 293 -19 995 188 0 11 chr13 105241048 105241224 -14503674 + FAM SINE Alu 1 174 -1 603 145 119 31 chr13 105241232 105241391 -14503507 - Charlie5 DNA MER1_type -74 2538 2366 360 282 92 15 chr13 105241417 105241623 -14503275 - LTR16A1 LTR ERVL -183 274 53 2512 76 0 0 chr13 105242319 105242620 -14502278 - AluY SINE Alu -10 301 1 481 215 174 55 chr13 105242753 105242972 -14501926 - MIR SINE MIR -15 247 3 289 233 166 23 chr13 105243064 105243232 -14501666 - MIR SINE MIR -46 216 33 2306 78 3 50 chr13 105243785 105244106 -14500792 - AluSp SINE Alu -7 306 1 183 42 0 0 chr13 105244593 105244617 -14500281 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1945 118 20 27 chr13 105244617 105244906 -14499992 - AluSp SINE Alu -24 289 1 194 164 18 0 chr13 105245090 105245145 -14499753 + CT-rich Low_complexity Low_complexity 1 56 0 849 199 12 0 chr13 105245146 105245307 -14499591 - FRAM SINE Alu -3 163 1 2210 114 0 7 chr13 105246319 105246617 -14498281 - AluSx SINE Alu -16 296 1 2242 92 0 0 chr13 105246629 105246939 -14497959 - AluSx SINE Alu 0 310 1 1676 164 95 17 chr13 105247332 105247680 -14497218 + THE1C LTR MaLR 1 375 0 2323 112 3 0 chr13 105247701 105248006 -14496892 - AluSx SINE Alu -6 306 1 1135 186 108 8 chr13 105248006 105248264 -14496634 - MER33 DNA MER1_type -40 284 1 1690 149 27 76 chr13 105248550 105248878 -14496020 + AluJo SINE Alu 1 312 0 2318 99 0 13 chr13 105249415 105249718 -14495180 - AluSx SINE Alu -13 299 1 222 285 57 89 chr13 105250289 105250410 -14494488 + L3 LINE CR1 864 980 -597 655 215 8 0 chr13 105250410 105250540 -14494358 + FLAM_C SINE Alu 1 131 -2 222 285 57 89 chr13 105250540 105250576 -14494322 + L3 LINE CR1 980 1016 -561 392 306 0 42 chr13 105250625 105250769 -14494129 + MIR SINE MIR 42 179 -83 250 342 59 35 chr13 105251394 105251596 -14493302 + L2 LINE L2 2746 2952 -362 527 322 49 25 chr13 105252135 105252380 -14492518 - MIR SINE MIR -4 258 8 2160 98 3 7 chr13 105252853 105253159 -14491739 + AluSx SINE Alu 1 305 0 280 306 59 0 chr13 105253417 105253502 -14491396 - MIR SINE MIR -75 133 44 1910 78 9 137 chr13 105253799 105254018 -14490880 - AluSg SINE Alu 0 310 147 1952 114 3 67 chr13 105254018 105254333 -14490565 - AluSc SINE Alu -14 295 1 1910 78 9 137 chr13 105254333 105254462 -14490436 - AluSg SINE Alu -163 147 3 2236 107 7 0 chr13 105255580 105255879 -14489019 - AluSq SINE Alu -12 301 1 4333 115 36 40 chr13 105256056 105256580 -14488318 - Tigger3(Golem) DNA MER2_type -8 3020 2498 2349 103 0 0 chr13 105256580 105256880 -14488018 - AluSx SINE Alu -10 302 3 4333 115 36 40 chr13 105256880 105257095 -14487803 - Tigger3(Golem) DNA MER2_type -530 2498 2284 6500 120 29 27 chr13 105257108 105257299 -14487599 + L1MA3 LINE L1 5139 5328 -977 1686 127 22 82 chr13 105257299 105257615 -14487283 + AluSx SINE Alu 1 297 -15 6500 120 29 27 chr13 105257615 105258580 -14486318 + L1MA3 LINE L1 5328 6305 0 379 235 112 10 chr13 105258581 105258679 -14486219 - Tigger3(Golem) DNA MER2_type -2921 108 1 331 193 84 0 chr13 105259528 105259611 -14485287 - L1M4 LINE L1 -1431 4715 4626 516 232 8 8 chr13 105259622 105259747 -14485151 - L1ME LINE L1 -431 5733 5609 649 189 108 104 chr13 105259748 105259854 -14485044 - MER58C DNA MER1_type -2206 214 110 216 0 0 0 chr13 105259854 105259878 -14485020 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 649 189 108 104 chr13 105259878 105259983 -14484915 - MER58C DNA MER1_type -2310 110 2 958 221 22 25 chr13 105259995 105260271 -14484627 - L1ME LINE L1 -555 5609 5335 361 120 32 160 chr13 105260347 105260472 -14484426 - L1MC4 LINE L1 -60 7982 7874 2402 66 3 0 chr13 105260472 105260774 -14484124 + L1PA6 LINE L1 5837 6139 -15 2632 64 0 0 chr13 105260838 105261149 -14483749 + AluY SINE Alu 1 311 0 931 270 104 43 chr13 105261149 105261548 -14483350 - L1MC4 LINE L1 -165 7877 7421 2054 143 3 0 chr13 105261548 105261848 -14483050 - AluJb SINE Alu -7 305 5 931 270 104 43 chr13 105261848 105262104 -14482794 - L1MC4 LINE L1 -621 7421 7182 587 299 111 67 chr13 105262162 105262864 -14482034 - L1MEd LINE L1 -5212 907 238 2039 109 33 0 chr13 105262864 105263166 -14481732 - AluSq SINE Alu 0 311 1 587 299 111 67 chr13 105263166 105263181 -14481717 - L1MEd LINE L1 -5881 238 225 1057 170 0 0 chr13 105263181 105263346 -14481552 - FRAM SINE Alu -1 165 1 587 299 111 67 chr13 105263346 105263482 -14481416 - L1MEd LINE L1 -5894 225 14 4218 212 107 19 chr13 105263845 105264157 -14480741 - L1M4 LINE L1 -1532 4614 4331 2184 105 13 10 chr13 105264157 105264461 -14480437 - AluSx SINE Alu -5 307 3 2248 124 0 3 chr13 105264470 105264777 -14480121 - AluSg SINE Alu -4 306 1 4218 212 107 19 chr13 105264777 105265703 -14479195 - L1M4 LINE L1 -1822 4324 3256 1030 170 22 40 chr13 105265709 105265932 -14478966 - MLT1A1 LTR MaLR 0 365 147 2078 121 7 0 chr13 105266069 105266358 -14478540 - AluSx SINE Alu -21 291 1 243 0 0 0 chr13 105268139 105268166 -14476732 + (TG)n Simple_repeat Simple_repeat 2 28 0 2558 62 0 0 chr13 105270614 105270918 -14473980 + AluY SINE Alu 1 304 -7 264 317 55 55 chr13 105271105 105271250 -14473648 - MIR SINE MIR -109 153 9 359 296 253 7 chr13 105271333 105271630 -14473268 - L2 LINE L2 -20 3293 2924 * 403 340 154 12 chr13 105271628 105272114 -14472784 + L2 LINE L2 1840 2394 -920 210 235 0 20 chr13 105272456 105272507 -14472391 + CT-rich Low_complexity Low_complexity 5 54 0 353 37 0 19 chr13 105273961 105274015 -14470883 - L1MB3 LINE L1 -2 6181 6129 404 264 76 59 chr13 105274039 105274479 -14470419 - MER101 LTR ERV1 -29 445 24 354 97 0 69 chr13 105274495 105274567 -14470331 - L1MB3 LINE L1 -35 6148 6082 471 346 65 55 chr13 105274745 105275037 -14469861 - L2 LINE L2 -9 3263 2969 23 0 0 0 chr13 105275152 105275175 -14469723 + AT_rich Low_complexity Low_complexity 1 23 0 2393 218 112 28 chr13 105275223 105275784 -14469114 - L1MD2 LINE L1 -245 6508 5995 2097 114 0 24 chr13 105275784 105276082 -14468816 - AluSg SINE Alu -19 291 1 2393 218 112 28 chr13 105276082 105276648 -14468250 - L1MD2 LINE L1 -758 5995 5288 1911 156 62 32 chr13 105276655 105277191 -14467707 + MLT2A2 LTR ERVL 1 554 0 5433 231 99 46 chr13 105277191 105277579 -14467319 - L1MD2 LINE L1 -1266 5274 4908 1530 164 76 4 chr13 105277579 105277841 -14467057 - AluJo SINE Alu -31 281 1 5433 231 99 46 chr13 105277841 105277913 -14466985 - L1MD2 LINE L1 -1632 4908 4841 713 204 0 8 chr13 105277913 105278045 -14466853 - FLAM_A SINE Alu -2 131 1 5433 231 99 46 chr13 105278045 105278115 -14466783 - L1MD2 LINE L1 -1699 4841 4776 1802 141 14 17 chr13 105278115 105278405 -14466493 + AluJo SINE Alu 1 289 -23 5433 231 99 46 chr13 105278405 105279187 -14465711 - L1MD2 LINE L1 -1764 4776 4036 2478 76 3 0 chr13 105279187 105279488 -14465410 - AluSp SINE Alu -11 302 1 5433 231 99 46 chr13 105279488 105280808 -14464090 - L1MD2 LINE L1 -2504 4036 2787 1667 163 78 0 chr13 105280808 105281091 -14463807 - AluJo SINE Alu -7 305 1 5433 231 99 46 chr13 105281091 105281656 -14463242 - L1MD2 LINE L1 -3753 2787 2253 2180 125 0 6 chr13 105281656 105281968 -14462930 + AluSg SINE Alu 1 310 0 5433 231 99 46 chr13 105281968 105282813 -14462085 - L1MD2 LINE L1 -4287 2253 1026 265 277 34 25 chr13 105283657 105283776 -14461122 - L1MD2 LINE L1 -5935 595 476 2113 117 0 7 chr13 105284388 105284716 -14460182 - AluSx SINE Alu 0 326 1 2347 100 3 0 chr13 105285476 105285777 -14459121 - AluSx SINE Alu -10 302 1 2220 123 0 16 chr13 105286251 105286567 -14458331 + AluSx SINE Alu 1 311 -1 1816 152 6 40 chr13 105286744 105287067 -14457831 - AluJo SINE Alu 0 312 1 855 229 9 14 chr13 105288243 105288453 -14456445 - MER20 DNA MER1_type -6 213 5 2138 113 3 0 chr13 105288589 105288880 -14456018 + AluY SINE Alu 5 296 -15 1987 142 3 13 chr13 105288940 105289243 -14455655 - AluSx SINE Alu -12 300 1 2373 85 3 0 chr13 105289298 105289592 -14455306 + AluSg SINE Alu 1 295 -15 258 274 85 33 chr13 105289604 105289757 -14455141 + L1MC/D LINE L1 5355 5515 -606 338 178 77 32 chr13 105289908 105290014 -14454884 + L1MC/D LINE L1 5727 5835 -297 675 194 0 8 chr13 105290956 105291085 -14453813 - FLAM_A SINE Alu -5 128 1 557 172 0 0 chr13 105291095 105291188 -14453710 - AluJb SINE Alu -11 301 209 1320 126 14 5 chr13 105292286 105292508 -14452390 - L1MB3 LINE L1 0 6183 5960 1966 94 11 22 chr13 105293058 105293334 -14451564 - AluSg SINE Alu -37 273 1 252 181 28 14 chr13 105293369 105293441 -14451457 + T-rich Low_complexity Low_complexity 4 76 0 21 36 0 0 chr13 105294140 105294168 -14450730 + AT_rich Low_complexity Low_complexity 1 28 0 2193 67 14 7 chr13 105294312 105294639 -14450259 + AluSp SINE Alu 1 329 0 2592 58 0 0 chr13 105295439 105295748 -14449150 - AluY SINE Alu -2 309 1 21 0 0 0 chr13 105298471 105298492 -14446406 + AT_rich Low_complexity Low_complexity 1 21 0 2260 109 3 3 chr13 105299066 105299370 -14445528 - AluSq SINE Alu -9 304 1 1732 167 45 9 chr13 105300966 105301302 -14443596 - MER7A DNA MER2_type 0 346 1 1207 207 5 0 chr13 105301701 105301923 -14442975 + MER58A DNA MER1_type 2 224 0 37 0 0 0 chr13 105302011 105302048 -14442850 + AT_rich Low_complexity Low_complexity 1 37 0 2358 102 7 0 chr13 105302087 105302391 -14442507 - AluSg1 SINE Alu -3 306 1 2247 116 0 0 chr13 105303223 105303524 -14441374 + AluSx SINE Alu 1 301 -11 314 349 0 66 chr13 105304238 105304390 -14440508 + L1MC/D LINE L1 5532 5673 -2135 366 100 0 0 chr13 105305071 105305131 -14439767 + (TG)n Simple_repeat Simple_repeat 1 60 0 387 282 28 35 chr13 105305288 105305430 -14439468 - MIR SINE MIR -67 195 55 22 0 0 0 chr13 105305852 105305874 -14439024 + AT_rich Low_complexity Low_complexity 1 22 0 352 241 38 0 chr13 105306308 105306387 -14438511 + MIR SINE MIR 30 111 -151 477 256 71 91 chr13 105306412 105306589 -14438309 - L1MEc LINE L1 -3834 2381 2202 636 195 0 0 chr13 105306589 105306717 -14438181 - L1MB7 LINE L1 0 6184 6057 477 256 71 91 chr13 105306717 105307110 -14437788 - L1MEc LINE L1 -4013 2202 1864 2008 180 29 22 chr13 105307147 105307598 -14437300 - MER65C LTR ERV1 -7 454 1 3266 148 54 3 chr13 105307682 105308289 -14436609 - L1MB4 LINE L1 -1 6179 5542 741 201 90 0 chr13 105308753 105308897 -14436001 + FRAM SINE Alu 1 157 -19 400 252 63 14 chr13 105308962 105309029 -14435869 - L1MA10 LINE L1 -11 6323 6257 1953 202 86 68 chr13 105309029 105309312 -14435586 - L1ME1 LINE L1 -76 6090 5814 1817 135 60 4 chr13 105309312 105309601 -14435297 - AluSx SINE Alu 0 304 1 1953 202 86 68 chr13 105309601 105310269 -14434629 - L1ME1 LINE L1 -352 5814 5106 1752 175 3 3 chr13 105310269 105310555 -14434343 + AluJb SINE Alu 1 286 -26 1953 202 86 68 chr13 105310555 105310828 -14434070 - L1ME1 LINE L1 -1060 5106 4840 804 103 0 0 chr13 105310828 105310935 -14433963 - AluY SINE Alu -71 240 134 478 278 24 30 chr13 105311303 105311472 -14433426 + L1ME LINE L1 37 204 -5866 233 254 34 0 chr13 105311505 105311564 -14433334 + L1ME LINE L1 419 479 -5591 2366 74 10 0 chr13 105312162 105312458 -14432440 + AluSx SINE Alu 1 299 -13 1316 128 0 0 chr13 105312518 105312705 -14432193 - AluSg/x SINE Alu 0 312 126 2227 114 3 0 chr13 105312705 105313002 -14431896 - AluSq SINE Alu -15 298 1 1095 189 201 36 chr13 105313922 105314339 -14430559 + Charlie1b DNA MER1_type 5 490 -33 196 261 45 68 chr13 105314351 105314439 -14430459 - L2 LINE L2 -214 3099 3014 1890 144 3 48 chr13 105314609 105314753 -14430145 + AluJb SINE Alu 1 125 -187 2417 80 0 0 chr13 105314753 105315052 -14429846 + AluY SINE Alu 1 299 -12 1890 144 3 48 chr13 105315052 105315219 -14429679 + AluJb SINE Alu 125 298 -14 28 48 0 0 chr13 105315318 105315360 -14429538 + AT_rich Low_complexity Low_complexity 1 42 0 700 248 184 0 chr13 105315720 105315938 -14428960 - MIR SINE MIR -2 260 3 2520 121 6 3 chr13 105316695 105317058 -14427840 + THE1B LTR MaLR 1 364 0 274 287 28 55 chr13 105317147 105317268 -14427630 - MIR SINE MIR -68 140 38 2245 117 0 7 chr13 105317450 105317758 -14427140 + AluSx SINE Alu 5 310 -2 32 57 0 0 chr13 105317927 105317980 -14426918 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr13 105321732 105321754 -14423144 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 105321772 105321793 -14423105 + AT_rich Low_complexity Low_complexity 1 21 0 2576 50 0 0 chr13 105321798 105322095 -14422803 + AluY SINE Alu 1 297 -14 306 87 0 0 chr13 105322728 105322774 -14422124 + (TG)n Simple_repeat Simple_repeat 1 46 0 492 292 26 67 chr13 105322802 105323116 -14421782 - L2 LINE L2 -277 3036 2731 432 275 58 64 chr13 105323858 105324171 -14420727 + MLT1L LTR MaLR 142 452 -163 1495 170 0 30 chr13 105324413 105324678 -14420220 - AluJb SINE Alu -8 304 48 1807 121 4 4 chr13 105324756 105325021 -14419877 - AluSx SINE Alu 0 312 48 2322 86 30 0 chr13 105325088 105325391 -14419507 - AluSx SINE Alu 0 312 1 200 211 0 0 chr13 105326122 105326160 -14418738 + (TG)n Simple_repeat Simple_repeat 2 39 0 194 265 20 0 chr13 105326308 105326357 -14418541 - MIR3 SINE MIR -5 203 154 190 309 25 112 chr13 105326391 105326669 -14418229 - L2 LINE L2 -73 3199 2946 1466 104 50 9 chr13 105326962 105327184 -14417714 - MSTA LTR MaLR 0 428 198 361 278 120 15 chr13 105327219 105327352 -14417546 + L2 LINE L2 3167 3313 0 1645 176 24 48 chr13 105327542 105327877 -14417021 - MER58B DNA MER1_type -6 335 9 221 304 14 0 chr13 105327907 105327976 -14416922 - L3 LINE CR1 -179 1398 1329 442 293 64 37 chr13 105327983 105328171 -14416727 - L1ME3A LINE L1 -12 6158 5966 250 153 22 103 chr13 105328225 105328327 -14416571 - L1ME3A LINE L1 -196 5966 5874 1713 152 25 7 chr13 105328353 105328630 -14416268 - AluJb SINE Alu -9 303 22 2330 97 3 0 chr13 105328640 105328949 -14415949 - AluSp SINE Alu -3 310 1 317 339 94 17 chr13 105329040 105329220 -14415678 - L3 LINE CR1 -767 810 617 2095 128 13 0 chr13 105329463 105329768 -14415130 + AluSx SINE Alu 1 309 -3 505 63 0 0 chr13 105330689 105330752 -14414146 - L1PA13 LINE L1 -16 6147 6085 6391 102 15 28 chr13 105330757 105331049 -14413849 - L1PB1 LINE L1 0 6151 5857 2134 85 0 0 chr13 105331049 105331353 -14413545 + AluSc SINE Alu 35 309 0 6391 102 15 28 chr13 105331353 105331891 -14413007 - L1PB1 LINE L1 -294 5857 5328 4266 70 4 4 chr13 105331891 105332422 -14412476 - L1PA7 LINE L1 0 6154 5624 6391 102 15 28 chr13 105332422 105332673 -14412225 - L1PB1 LINE L1 -823 5328 5075 733 148 0 0 chr13 105332711 105332812 -14412086 - AluJ/FLAM SINE Alu -211 101 1 2044 123 28 0 chr13 105333403 105333687 -14411211 + AluSx SINE Alu 1 292 -20 781 168 0 0 chr13 105333696 105333815 -14411083 + AluJo/FLAM SINE Alu 15 133 -179 1636 163 34 14 chr13 105333818 105334112 -14410786 + AluJb SINE Alu 1 300 -12 500 232 94 2 chr13 105334430 105334612 -14410286 - MIR SINE MIR -24 238 2 359 264 23 0 chr13 105335344 105335431 -14409467 + L2 LINE L2 3184 3272 0 828 154 66 0 chr13 105335576 105335712 -14409186 + AluSc SINE Alu 148 292 -17 199 362 0 11 chr13 105336203 105336297 -14408601 + MIR SINE MIR 50 142 -66 2138 101 28 0 chr13 105336802 105337090 -14407808 + AluY SINE Alu 3 298 -13 2364 63 0 11 chr13 105337414 105337721 -14407177 - AluSg SINE Alu 0 304 1 21 57 0 0 chr13 105338085 105338120 -14406778 + AT_rich Low_complexity Low_complexity 1 35 0 1240 164 71 13 chr13 105340204 105340430 -14404468 - AluJo SINE Alu -6 306 68 1696 138 86 0 chr13 105340454 105340722 -14404176 - AluSg SINE Alu -19 291 1 414 0 0 0 chr13 105341471 105341517 -14403381 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 2203 95 7 0 chr13 105341517 105341801 -14403097 - AluSq SINE Alu -27 286 1 180 0 0 0 chr13 105341917 105341937 -14402961 + (T)n Simple_repeat Simple_repeat 1 20 0 2047 249 94 48 chr13 105342357 105343100 -14401798 - L1MC5 LINE L1 -411 7550 6775 2109 95 14 14 chr13 105343100 105343406 -14401492 - AluY SINE Alu 0 306 1 2047 249 94 48 chr13 105343406 105343604 -14401294 - L1MC5 LINE L1 -1186 6775 6588 214 203 40 14 chr13 105343610 105343684 -14401214 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 22 35 0 0 chr13 105343730 105343759 -14401139 + AT_rich Low_complexity Low_complexity 1 29 0 764 224 133 103 chr13 105344308 105344579 -14400319 - MER58B DNA MER1_type -2079 341 57 2352 103 6 0 chr13 105344579 105344890 -14400008 + AluSq SINE Alu 1 313 0 764 224 133 103 chr13 105344890 105344949 -14399949 - MER58B DNA MER1_type -2363 57 1 1595 198 0 14 chr13 105345060 105345353 -14399545 + AluJo SINE Alu 11 299 -13 289 281 104 43 chr13 105345353 105345748 -14399150 - HAL1b LINE L1 -846 502 84 28 0 0 0 chr13 105345748 105345776 -14399122 + AT_rich Low_complexity Low_complexity 1 28 0 2465 79 0 10 chr13 105345993 105346297 -14398601 + AluSg SINE Alu 1 301 -9 1920 123 48 14 chr13 105346410 105346703 -14398195 + AluSq SINE Alu 1 303 -10 340 277 129 26 chr13 105346949 105347104 -14397794 - L1MC3 LINE L1 -952 6856 6686 1809 166 0 33 chr13 105347135 105347442 -14397456 - AluJb SINE Alu -15 297 1 826 175 65 19 chr13 105347791 105347945 -14396953 - FAM SINE Alu -9 40 1 2159 112 25 0 chr13 105349276 105349562 -14395336 - AluSx SINE Alu -19 293 1 788 251 85 58 chr13 105349650 105350179 -14394719 + MER39 LTR ERV1 1 707 0 247 306 39 97 chr13 105350339 105350378 -14394520 + L2 LINE L2 2156 2196 -1118 2156 116 0 3 chr13 105350378 105350680 -14394218 - AluSc SINE Alu -6 303 3 247 306 39 97 chr13 105350680 105350740 -14394158 + L2 LINE L2 2196 2258 -1056 2399 86 0 0 chr13 105350740 105351032 -14393866 + AluSc SINE Alu 1 292 -17 247 306 39 97 chr13 105351032 105351189 -14393709 + L2 LINE L2 2258 2398 -916 245 306 0 14 chr13 105351870 105351942 -14392956 + L2 LINE L2 3185 3255 -17 207 162 0 0 chr13 105352562 105352599 -14392299 + (CA)n Simple_repeat Simple_repeat 2 38 0 2249 99 0 0 chr13 105352631 105352934 -14391964 - AluSq SINE Alu 0 303 1 1654 156 6 81 chr13 105352960 105353280 -14391618 - AluJo SINE Alu -16 296 1 268 366 31 27 chr13 105353857 105354081 -14390817 + L2 LINE L2 1433 1657 -1657 203 333 61 30 chr13 105354117 105354216 -14390682 - L2 LINE L2 -37 3235 3134 * 656 317 93 51 chr13 105354214 105354727 -14390171 + L2 LINE L2 1683 2232 -1082 1738 181 6 16 chr13 105354727 105355042 -14389856 - AluJo SINE Alu 0 312 1 656 317 93 51 chr13 105355042 105355197 -14389701 + L2 LINE L2 2232 2379 -935 570 226 0 0 chr13 105355223 105355325 -14389573 + MER58A DNA MER1_type 44 145 0 397 186 14 0 chr13 105355369 105355439 -14389459 + MER58A DNA MER1_type 154 224 0 307 318 30 30 chr13 105355548 105355680 -14389218 + L2 LINE L2 2543 2674 -640 6473 124 27 27 chr13 105355686 105357437 -14387461 - L1MA3 LINE L1 -106 6199 4449 2111 113 0 10 chr13 105357437 105357729 -14387169 - AluSc SINE Alu -20 289 1 6473 124 27 27 chr13 105357729 105357782 -14387116 - L1MA3 LINE L1 -1856 4449 4397 216 0 0 0 chr13 105357782 105357806 -14387092 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 6473 124 27 27 chr13 105357806 105357867 -14387031 - L1MA3 LINE L1 -1908 4397 4329 223 296 0 0 chr13 105358132 105358186 -14386712 + L2 LINE L2 3008 3061 -252 484 263 12 62 chr13 105358261 105358421 -14386477 - L2 LINE L2 0 3313 3162 1134 146 0 88 chr13 105358487 105358626 -14386272 + MER2 DNA MER2_type 1 114 -231 2029 142 3 22 chr13 105358626 105358942 -14385956 - AluSx SINE Alu -2 310 1 1134 146 0 88 chr13 105358942 105359028 -14385870 + MER2 DNA MER2_type 114 206 -139 302 182 15 0 chr13 105359056 105359122 -14385776 + C-rich Low_complexity Low_complexity 4 70 0 271 196 0 0 chr13 105359129 105359175 -14385723 + MER2 DNA MER2_type 300 345 0 358 298 63 70 chr13 105359179 105359423 -14385475 - L2 LINE L2 -289 3024 2789 325 182 40 149 chr13 105359438 105359586 -14385312 + L2 LINE L2 3180 3311 -2 2239 109 0 0 chr13 105359832 105360126 -14384772 + AluSq SINE Alu 3 296 -17 2279 92 3 0 chr13 105360168 105360460 -14384438 + AluSg SINE Alu 1 293 -17 254 227 0 40 chr13 105360546 105360621 -14384277 - L1M4 LINE L1 -326 5852 5781 1279 74 0 12 chr13 105360635 105360797 -14384101 + AluSq SINE Alu 62 221 -92 992 172 55 71 chr13 105360808 105360856 -14384042 - L1M4 LINE L1 -360 5814 5767 1644 106 4 8 chr13 105360856 105361092 -14383806 + AluSx SINE Alu 62 296 -16 992 172 55 71 chr13 105361092 105361184 -14383714 - L1M4 LINE L1 -407 5767 5675 1889 106 33 53 chr13 105361184 105361485 -14383413 - AluSq SINE Alu -18 295 1 992 172 55 71 chr13 105361485 105361581 -14383317 - L1M4 LINE L1 -499 5675 5581 619 186 0 18 chr13 105361609 105361722 -14383176 + MLT1E LTR MaLR 56 166 -427 1023 271 58 29 chr13 105361733 105362109 -14382789 + MLT1E LTR MaLR 86 472 -121 398 298 22 44 chr13 105362780 105362961 -14381937 - MER89-int LTR ERV1 -4880 1921 1745 1951 117 13 50 chr13 105363253 105363570 -14381328 - AluSx SINE Alu -3 309 5 248 211 0 0 chr13 105364424 105364476 -14380422 + MER110 LTR ERV1 424 475 -16 2055 108 44 27 chr13 105364750 105365046 -14379852 - AluSx SINE Alu -9 303 3 1427 145 25 114 chr13 105365055 105365380 -14379518 - AluYb8 SINE Alu -22 296 1 4081 123 74 77 chr13 105366229 105367611 -14377287 - pTR5 LTR ERV1 0 2438 72 432 336 63 60 chr13 105367668 105368291 -14376607 - L2 LINE L2 -178 3094 2456 1803 158 3 10 chr13 105368796 105369094 -14375804 - AluSx SINE Alu -16 296 1 24 0 0 0 chr13 105369292 105369316 -14375582 + AT_rich Low_complexity Low_complexity 1 24 0 803 231 91 18 chr13 105369790 105370011 -14374887 - MIR SINE MIR -1 261 25 1756 104 119 19 chr13 105370011 105370280 -14374618 - AluSx SINE Alu -16 296 1 2208 114 0 0 chr13 105371020 105371318 -14373580 - AluSx SINE Alu -13 299 2 30 0 0 0 chr13 105371582 105371612 -14373286 + AT_rich Low_complexity Low_complexity 1 30 0 2220 109 3 10 chr13 105371619 105371921 -14372977 + AluSx SINE Alu 1 300 -12 5308 36 3 0 chr13 105372305 105372894 -14372004 + LTR10C LTR ERV1 1 591 0 229 295 33 0 chr13 105373097 105373158 -14371740 - L2 LINE L2 -52 3261 3199 2176 107 20 7 chr13 105373265 105373565 -14371333 + AluSx SINE Alu 1 304 -8 396 280 32 24 chr13 105373711 105373836 -14371062 - L2 LINE L2 0 3313 3188 225 390 0 0 chr13 105374189 105374284 -14370614 + L2 LINE L2 3134 3228 -44 576 256 0 0 chr13 105374757 105374874 -14370024 - FLAM_A SINE Alu -16 117 1 237 323 118 74 chr13 105375170 105375338 -14369560 + L2 LINE L2 2836 2995 -318 480 35 0 0 chr13 105375338 105375396 -14369502 + (TG)n Simple_repeat Simple_repeat 1 58 0 1831 146 7 7 chr13 105375397 105375684 -14369214 - AluJb SINE Alu -25 287 1 237 323 118 74 chr13 105375684 105375878 -14369020 + L2 LINE L2 2994 3216 -97 544 270 140 50 chr13 105375940 105376416 -14368482 - L1MC4a LINE L1 -297 5824 5326 211 235 20 20 chr13 105376666 105376717 -14368181 + L2 LINE L2 3263 3313 0 281 82 20 0 chr13 105377890 105377939 -14366959 + (CA)n Simple_repeat Simple_repeat 2 51 0 183 162 0 0 chr13 105378282 105378319 -14366579 + A-rich Low_complexity Low_complexity 1 37 0 2417 90 0 3 chr13 105379453 105379765 -14365133 - AluSq SINE Alu -2 311 1 2159 121 3 9 chr13 105380928 105381243 -14363655 - AluSq SINE Alu 0 313 1 401 316 53 8 chr13 105382210 105382343 -14362555 - MIR SINE MIR -123 139 1 581 316 149 42 chr13 105382871 105383342 -14361556 + L2 LINE L2 2375 2895 -419 181 271 47 84 chr13 105383420 105383527 -14361371 + L2 LINE L2 2958 3060 -253 367 224 67 48 chr13 105383618 105383828 -14361070 - L1MC4 LINE L1 -1 8041 7828 476 255 34 62 chr13 105383875 105384083 -14360815 - L1ME2 LINE L1 -19 6145 5944 3137 206 22 20 chr13 105384089 105384469 -14360429 - L1MB7 LINE L1 -19 6165 5782 1731 174 23 3 chr13 105384469 105384768 -14360130 - AluJb SINE Alu -7 305 1 3137 206 22 20 chr13 105384768 105385120 -14359778 - L1MB7 LINE L1 -402 5782 5432 1815 214 64 9 chr13 105385120 105385608 -14359290 + L1MDa LINE L1 2576 3091 -3449 2003 143 3 0 chr13 105385912 105386199 -14358699 - AluSx SINE Alu -24 288 1 324 0 0 0 chr13 105387933 105387969 -14356929 + (TG)n Simple_repeat Simple_repeat 1 36 0 262 291 0 53 chr13 105388511 105388615 -14356283 - MLT1I LTR MaLR -106 340 207 298 391 15 0 chr13 105388709 105388842 -14356056 + L2 LINE L2 2506 2640 -674 721 321 41 8 chr13 105388879 105389125 -14355773 - LTR16A LTR ERVL -54 396 143 412 244 56 74 chr13 105389229 105389325 -14355573 - L1M4 LINE L1 -3184 2962 2866 1889 141 0 59 chr13 105389325 105389631 -14355267 - AluJb SINE Alu -24 288 1 412 244 56 74 chr13 105389631 105389853 -14355045 - L1M4 LINE L1 -3280 2866 2650 2224 98 3 16 chr13 105389906 105390211 -14354687 - AluSx SINE Alu -11 301 1 2349 90 3 0 chr13 105390219 105390519 -14354379 - AluY SINE Alu -10 301 1 2275 107 0 7 chr13 105390519 105390819 -14354079 - AluSx SINE Alu -14 298 1 257 242 78 82 chr13 105390968 105391199 -14353699 - L1M4 LINE L1 -3775 2371 2142 25 31 0 0 chr13 105391199 105391231 -14353667 + AT_rich Low_complexity Low_complexity 1 32 0 3866 213 42 10 chr13 105391424 105391751 -14353147 - L1MC/D LINE L1 -743 5403 5088 2276 85 0 23 chr13 105391751 105392057 -14352841 - AluSq SINE Alu -14 299 1 3866 213 42 10 chr13 105392057 105392966 -14351932 - L1MC/D LINE L1 -1058 5088 4252 224 82 0 61 chr13 105393459 105393688 -14351210 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 947 179 22 11 chr13 105393688 105393864 -14351034 - AluSg/x SINE Alu 0 541 368 2347 98 0 9 chr13 105393864 105394180 -14350718 - AluSp SINE Alu 0 313 1 257 242 78 82 chr13 105394329 105394560 -14350338 - L1MC/D LINE L1 -3775 2371 2142 25 31 0 0 chr13 105394560 105394592 -14350306 + AT_rich Low_complexity Low_complexity 1 32 0 5037 223 40 11 chr13 105394785 105395112 -14349786 - L1MC/D LINE L1 -743 5403 5087 2276 85 0 23 chr13 105395112 105395418 -14349480 - AluSq SINE Alu -14 299 1 5037 223 40 11 chr13 105395418 105396687 -14348211 - L1MC/D LINE L1 -1059 5087 3887 243 364 74 56 chr13 105397081 105397350 -14347548 - L2 LINE L2 -533 2781 2508 308 336 58 18 chr13 105397357 105397580 -14347318 + L1ME LINE L1 5621 5852 -318 617 270 100 46 chr13 105397709 105398079 -14346819 + L1MC4 LINE L1 7194 7583 -459 329 332 67 53 chr13 105398879 105399310 -14345588 + L2 LINE L2 2544 3179 -134 437 220 0 0 chr13 105399338 105399429 -14345469 - AluJb SINE Alu -86 226 136 23 0 0 0 chr13 105399994 105400017 -14344881 + AT_rich Low_complexity Low_complexity 1 23 0 1431 307 26 67 chr13 105400082 105400473 -14344425 - THE1C LTR MaLR 0 375 1 1610 172 28 14 chr13 105400958 105401248 -14343650 + AluJo SINE Alu 1 294 -18 2098 112 42 0 chr13 105402176 105402463 -14342435 - AluSc SINE Alu -10 299 1 23 33 0 0 chr13 105402683 105402713 -14342185 + AT_rich Low_complexity Low_complexity 1 30 0 2854 209 48 14 chr13 105403393 105404023 -14340875 + MER82 DNA MER2_type 3 653 0 379 227 18 9 chr13 105405397 105405507 -14339391 - L1ME3A LINE L1 -206 5964 5854 1553 233 56 14 chr13 105405613 105406056 -14338842 - MLT1C LTR MaLR 0 467 6 477 340 95 13 chr13 105406678 105407057 -14337841 - L1MDa LINE L1 -3957 2439 2030 845 140 0 22 chr13 105407347 105407483 -14337415 + FLAM_C SINE Alu 1 133 0 292 263 120 54 chr13 105407693 105408169 -14336729 - L1MDa LINE L1 -4871 1334 824 1291 207 12 110 chr13 105408764 105408895 -14336003 + L1M4 LINE L1 4567 4709 -1437 237 33 0 0 chr13 105408895 105408925 -14335973 + (CA)n Simple_repeat Simple_repeat 2 31 0 1291 207 12 110 chr13 105408925 105408943 -14335955 + L1M4 LINE L1 4709 4727 -1419 1592 168 25 25 chr13 105408943 105409228 -14335670 + AluJo SINE Alu 2 286 -26 1291 207 12 110 chr13 105409228 105409588 -14335310 + L1M4 LINE L1 4727 5027 -1119 1067 199 33 16 chr13 105409594 105409964 -14334934 + L1M4 LINE L1 5127 5502 -676 2226 102 0 0 chr13 105409966 105410274 -14334624 + AluY SINE Alu 1 308 0 834 188 21 0 chr13 105410274 105410474 -14334424 + L1M4c LINE L1 2415 2618 -3764 9086 100 36 10 chr13 105410486 105411813 -14333085 + L1P3 LINE L1 2 1363 -5098 2445 96 6 0 chr13 105411812 105412156 -14332742 - L1P LINE L1 -3852 2294 1949 * 5298 95 5 1 chr13 105412150 105412920 -14331978 + L1P3 LINE L1 2720 3492 -2969 2291 102 0 0 chr13 105413617 105413932 -14330966 - AluSx SINE Alu 0 312 1 23 68 0 0 chr13 105414257 105414301 -14330597 + AT_rich Low_complexity Low_complexity 1 44 0 1584 144 7 37 chr13 105414422 105414692 -14330206 + AluSx SINE Alu 51 312 0 2238 100 3 3 chr13 105415044 105415343 -14329555 + AluSx SINE Alu 1 299 -13 318 283 142 9 chr13 105415840 105415953 -14328945 - L2 LINE L2 0 3272 3145 2554 55 0 13 chr13 105416108 105416417 -14328481 + AluSx SINE Alu 1 305 -7 22 35 0 0 chr13 105416907 105416936 -14327962 + AT_rich Low_complexity Low_complexity 1 29 0 327 305 67 48 chr13 105417255 105417465 -14327433 - HAL1 LINE L1 -1099 1408 1195 608 215 140 15 chr13 105417636 105417836 -14327062 - MER2 DNA MER2_type 0 345 121 801 231 0 6 chr13 105417837 105417997 -14326901 + AluJb SINE Alu 137 295 -17 677 223 8 0 chr13 105417997 105418127 -14326771 - MER2 DNA MER2_type -213 132 2 184 222 19 56 chr13 105418353 105418407 -14326491 - L3 LINE CR1 -297 1280 1229 629 310 22 5 chr13 105419027 105419211 -14325687 + MIR SINE MIR 57 243 -19 195 242 0 0 chr13 105419278 105419340 -14325558 + (TTA)n Simple_repeat Simple_repeat 3 64 0 312 48 0 0 chr13 105419640 105419682 -14325216 + (TG)n Simple_repeat Simple_repeat 2 43 0 2283 133 13 23 chr13 105420673 105421065 -14323833 - MLT1B LTR MaLR 0 390 3 341 321 30 24 chr13 105421212 105421380 -14323518 + MARNA DNA Mariner 316 484 -102 298 143 0 0 chr13 105421647 105421696 -14323202 - Alu SINE Alu -2 298 250 1524 180 3 42 chr13 105422942 105423253 -14321645 - AluJb SINE Alu -9 303 5 2729 228 95 4 chr13 105423276 105424025 -14320873 - L1MC4 LINE L1 -5 8037 7221 235 292 62 0 chr13 105425011 105425107 -14319791 - MER103 DNA DNA -45 121 20 702 34 0 0 chr13 105425401 105425490 -14319408 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 1985 138 10 3 chr13 105426449 105426738 -14318160 - AluSx SINE Alu -17 295 5 21 0 0 0 chr13 105428855 105428876 -14316022 + AT_rich Low_complexity Low_complexity 1 21 0 278 66 0 151 chr13 105434602 105434708 -14310190 - AluSc SINE Alu -12 287 198 1867 84 19 8 chr13 105434871 105435132 -14309766 - AluSc SINE Alu -45 264 1 1799 172 0 3 chr13 105435314 105435605 -14309293 - AluJb SINE Alu -22 290 1 23 54 0 0 chr13 105435662 105435699 -14309199 + AT_rich Low_complexity Low_complexity 1 37 0 2161 129 0 6 chr13 105436092 105436403 -14308495 + AluSx SINE Alu 1 309 -3 2066 130 0 0 chr13 105437933 105438226 -14306672 + AluSg1 SINE Alu 1 293 -16 443 305 63 6 chr13 105438242 105438416 -14306482 + MIR SINE MIR 78 261 -1 2180 120 0 0 chr13 105438467 105438768 -14306130 + AluSx SINE Alu 1 301 -11 381 392 20 0 chr13 105438958 105439111 -14305787 + L2 LINE L2 3117 3272 0 555 306 62 28 chr13 105439402 105439726 -14305172 + L1ME LINE L1 5476 5810 -311 306 256 0 0 chr13 105439950 105440032 -14304866 - L1MC4 LINE L1 0 8042 7961 262 273 0 40 chr13 105440047 105440146 -14304752 + CT-rich Low_complexity Low_complexity 2 96 0 312 231 0 0 chr13 105440147 105440212 -14304686 - L1MC4 LINE L1 -141 7901 7837 1151 225 55 25 chr13 105440249 105440810 -14304088 - LTR8 LTR ERV1 -14 677 1 1614 203 98 8 chr13 105441153 105441542 -14303356 - MER21B LTR ERV1 -342 521 98 2549 186 14 58 chr13 105441597 105442221 -14302677 + L1MC4 LINE L1 7443 8039 -3 48 53 0 0 chr13 105442226 105442302 -14302596 + AT_rich Low_complexity Low_complexity 1 76 0 2059 92 4 0 chr13 105443794 105444056 -14300842 - AluSx SINE Alu -15 297 35 346 320 142 59 chr13 105444466 105444618 -14300280 + L2 LINE L2 2319 2457 -857 1708 188 0 3 chr13 105444618 105444905 -14299993 - AluJb SINE Alu -26 286 1 346 320 142 59 chr13 105444905 105445293 -14299605 + L2 LINE L2 2457 2904 -410 186 71 0 0 chr13 105445341 105445369 -14299529 + (TC)n Simple_repeat Simple_repeat 1 28 0 13717 34 7 0 chr13 105445369 105447790 -14297108 - L1PA5 LINE L1 -8 6146 3705 1605 166 23 0 chr13 105447792 105448051 -14296847 - AluJo SINE Alu -35 277 13 405 0 0 0 chr13 105448609 105448654 -14296244 + (TG)n Simple_repeat Simple_repeat 2 46 0 604 262 132 25 chr13 105449040 105449467 -14295431 - MLT1J LTR MaLR -10 436 1 24 32 0 0 chr13 105449479 105449510 -14295388 + AT_rich Low_complexity Low_complexity 1 31 0 1903 161 3 22 chr13 105449575 105449892 -14295006 - AluJo SINE Alu 0 312 2 1002 222 41 5 chr13 105450076 105450270 -14294628 - MER58A DNA MER1_type -23 201 1 2163 100 20 7 chr13 105450333 105450634 -14294264 - AluSg SINE Alu -5 305 1 484 275 100 19 chr13 105450800 105450960 -14293938 - MIR SINE MIR -54 208 36 15799 138 37 11 chr13 105451360 105454010 -14290888 + Tigger2 DNA MER2_type 1 2718 0 2564 226 113 20 chr13 105454083 105454957 -14289941 - L1ME1 LINE L1 -6 6160 5231 985 129 14 0 chr13 105454959 105455099 -14289799 + AluJb SINE Alu 1 142 -170 1848 123 0 8 chr13 105455100 105455361 -14289537 + AluSg SINE Alu 1 259 -51 192 158 0 0 chr13 105455817 105455855 -14289043 + A-rich Low_complexity Low_complexity 1 38 0 2310 104 7 0 chr13 105456990 105457297 -14287601 - AluSq SINE Alu -2 311 3 242 188 12 71 chr13 105457310 105457369 -14287529 - L1ME1 LINE L1 -1198 4948 4894 9197 104 15 0 chr13 105457369 105458637 -14286261 + HSMAR1 DNA Mariner 1 1287 0 242 188 12 71 chr13 105458637 105458662 -14286236 - L1ME1 LINE L1 -1252 4894 4869 215 303 182 10 chr13 105460095 105460194 -14284704 + L2 LINE L2 3156 3271 -1 2188 116 3 3 chr13 105460242 105460545 -14284353 - AluSg SINE Alu -7 303 1 298 284 0 0 chr13 105460792 105460873 -14284025 + (TA)n Simple_repeat Simple_repeat 2 82 0 293 307 87 16 chr13 105461151 105461278 -14283620 - MIR3 SINE MIR -39 169 34 190 0 0 62 chr13 105462394 105462426 -14282472 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 432 212 79 43 chr13 105462536 105462705 -14282193 - MER63 DNA MER1_type -30 1658 1 225 289 51 41 chr13 105462989 105463186 -14281712 + L1MEd LINE L1 997 1195 -4924 279 123 53 35 chr13 105463405 105463462 -14281436 + HAL1b LINE L1 480 537 -811 1219 277 185 23 chr13 105463561 105464226 -14280672 + HAL1 LINE L1 13 785 -1722 2163 119 3 0 chr13 105464288 105464590 -14280308 + AluSp SINE Alu 1 303 -10 245 224 66 26 chr13 105464925 105465001 -14279897 - L2 LINE L2 -1 3271 3193 276 257 71 0 chr13 105465439 105465509 -14279389 - L2 LINE L2 -51 3262 3188 269 289 77 0 chr13 105466130 105466234 -14278664 + MER112 DNA MER1_type 4 115 -145 548 217 83 33 chr13 105466343 105466523 -14278375 + MER5A DNA MER1_type 1 189 0 575 134 63 31 chr13 105466534 105466661 -14278237 - Charlie1 DNA MER1_type -59 2702 2572 671 228 76 43 chr13 105466662 105466846 -14278052 - Charlie1 DNA MER1_type -2570 191 2 1598 183 47 3 chr13 105467314 105467615 -14277283 + MER2 DNA MER2_type 1 314 -31 266 203 8 158 chr13 105468255 105468388 -14276510 + L2 LINE L2 3195 3307 -6 240 35 0 0 chr13 105468429 105468458 -14276440 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 357 248 99 89 chr13 105469731 105469933 -14274965 - MER3 DNA MER1_type -1 208 5 323 281 33 41 chr13 105470185 105470306 -14274592 - L1ME4a LINE L1 -66 6055 5936 2317 95 0 13 chr13 105470573 105470877 -14274021 - AluSx SINE Alu -12 300 1 1714 164 0 27 chr13 105471023 105471322 -14273576 - AluJo SINE Alu -7 305 15 1279 117 10 5 chr13 105471324 105471520 -14273378 + AluSg/x SINE Alu 101 297 -15 595 213 52 7 chr13 105471526 105471681 -14273217 + L1ME1 LINE L1 5304 5465 -713 888 253 99 12 chr13 105471681 105472013 -14272885 + L1ME1 LINE L1 5741 6104 -74 290 30 0 0 chr13 105472016 105472049 -14272849 - U2 snRNA snRNA -155 33 1 2061 130 3 0 chr13 105472103 105472403 -14272495 + AluSx SINE Alu 1 301 -11 192 321 152 12 chr13 105472535 105472700 -14272198 - L2 LINE L2 -811 2503 2316 14903 121 35 15 chr13 105473016 105475189 -14269709 + Tigger1 DNA MER2_type 1 2226 -192 2099 100 0 7 chr13 105475189 105475479 -14269419 - AluY SINE Alu -18 293 6 14903 121 35 15 chr13 105475479 105475675 -14269223 + Tigger1 DNA MER2_type 2226 2417 -1 833 123 7 0 chr13 105477021 105477159 -14267739 + (TTTC)n Simple_repeat Simple_repeat 3 141 0 270 203 8 158 chr13 105477731 105477864 -14267034 + L2 LINE L2 3195 3307 -6 240 35 0 0 chr13 105477905 105477934 -14266964 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 1188 139 6 0 chr13 105478360 105478533 -14266365 + AluSg/x SINE Alu 115 288 -22 2018 118 44 27 chr13 105478542 105478839 -14266059 + AluSx SINE Alu 3 304 -8 227 211 0 0 chr13 105479113 105479165 -14265733 - MER110 LTR ERV1 -16 475 424 1472 137 16 59 chr13 105480019 105480275 -14264623 + AluSx SINE Alu 5 249 -63 433 184 18 9 chr13 105480396 105480505 -14264393 + CT-rich Low_complexity Low_complexity 3 112 0 1830 160 13 16 chr13 105480523 105480699 -14264199 - AluSx SINE Alu 0 312 136 2391 92 0 9 chr13 105480699 105481015 -14263883 - AluSp SINE Alu 0 313 1 1830 160 13 16 chr13 105481015 105481151 -14263747 - AluSx SINE Alu -176 136 1 2321 214 60 51 chr13 105483562 105483988 -14260910 + L1MB8 LINE L1 2174 2595 -3787 1783 170 17 3 chr13 105483988 105484282 -14260616 - AluJo SINE Alu -14 298 1 1558 192 3 51 chr13 105484282 105484595 -14260303 - AluJo SINE Alu -4 308 11 2321 214 60 51 chr13 105484595 105485253 -14259645 + L1MB8 LINE L1 2594 3269 -3113 1808 199 0 0 chr13 105485259 105485561 -14259337 + AluJb SINE Alu 1 302 -10 1219 181 149 12 chr13 105485578 105485665 -14259233 + AluJb SINE Alu 11 85 -227 437 0 19 0 chr13 105485665 105485718 -14259180 + (TAA)n Simple_repeat Simple_repeat 2 55 0 1219 181 149 12 chr13 105485718 105485878 -14259020 + AluJb SINE Alu 85 292 -20 380 195 8 23 chr13 105485881 105486009 -14258889 + GA-rich Low_complexity Low_complexity 3 128 0 3458 250 138 11 chr13 105486032 105488757 -14256141 + L1MB8 LINE L1 3300 6398 -16 507 280 148 30 chr13 105489147 105489519 -14255379 + L1ME2 LINE L1 56 471 -5599 599 255 44 78 chr13 105489781 105490249 -14254649 + L1ME2 LINE L1 530 1012 -5068 712 167 26 13 chr13 105490249 105490405 -14254493 + L1MA10 LINE L1 6171 6328 -6 2050 75 11 15 chr13 105490405 105490673 -14254225 + AluSx SINE Alu 46 312 0 599 255 44 78 chr13 105490673 105490727 -14254171 + L1ME2 LINE L1 1010 1047 -5033 1007 246 65 6 chr13 105490811 105491132 -14253766 + L1ME2 LINE L1 3999 4338 -1742 454 212 95 80 chr13 105491283 105491530 -14253368 + L1ME2 LINE L1 4349 4602 -1478 1928 126 67 45 chr13 105491530 105491886 -14253012 - THE1B LTR MaLR 0 364 1 454 212 95 80 chr13 105491886 105491902 -14252996 + L1ME2 LINE L1 4602 4616 -1464 1604 219 115 39 chr13 105491952 105492143 -14252755 + L1ME2 LINE L1 4892 5067 -1031 4463 149 69 2 chr13 105492143 105493001 -14251897 + L1MC2 LINE L1 5425 6339 -5 1604 219 115 39 chr13 105493001 105493740 -14251158 + L1ME2 LINE L1 5067 5893 -205 674 213 107 18 chr13 105493910 105494079 -14250819 - MIR SINE MIR 0 262 79 1594 158 34 30 chr13 105496316 105496614 -14248284 + AluJo SINE Alu 1 299 -13 274 358 52 1 chr13 105496694 105496824 -14248074 - MIR SINE MIR -67 141 7 214 251 117 76 chr13 105497301 105497472 -14247426 - MIR SINE MIR -49 213 36 252 326 109 0 chr13 105497980 105498072 -14246826 - L2 LINE L2 -49 3223 3122 22 0 0 0 chr13 105498436 105498458 -14246440 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr13 105499026 105499046 -14245852 + (TG)n Simple_repeat Simple_repeat 1 20 0 183 42 0 0 chr13 105499181 105499205 -14245693 + (T)n Simple_repeat Simple_repeat 1 24 0 2254 101 0 10 chr13 105499223 105499531 -14245367 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr13 105499969 105499992 -14244906 + AT_rich Low_complexity Low_complexity 1 23 0 257 254 17 0 chr13 105501025 105501084 -14243814 - L2 LINE L2 0 3313 3254 2254 88 0 10 chr13 105501618 105501912 -14242986 - AluSx SINE Alu -2 310 20 733 195 26 26 chr13 105502839 105503029 -14241869 + L1MB3 LINE L1 4372 4561 -1585 594 185 0 34 chr13 105503030 105503149 -14241749 + FLAM_A SINE Alu 28 142 0 1668 222 99 50 chr13 105503149 105503610 -14241288 + L1MB3 LINE L1 4553 5052 -1094 1892 145 0 24 chr13 105503610 105503929 -14240969 + AluSx SINE Alu 1 312 0 1668 222 99 50 chr13 105503929 105504052 -14240846 + L1MB3 LINE L1 5052 5167 -979 264 133 0 0 chr13 105504139 105504184 -14240714 - L1 LINE L1 -914 5232 5188 1838 159 42 17 chr13 105504214 105504284 -14240614 + L1MB3 LINE L1 5182 5249 -934 2168 104 7 14 chr13 105504284 105504591 -14240307 - AluSx SINE Alu 0 305 1 1838 159 42 17 chr13 105504591 105504954 -14239944 + L1MB3 LINE L1 5249 5614 -569 1875 156 27 8 chr13 105504959 105505325 -14239573 + L1MB3 LINE L1 5808 6180 -3 2317 102 0 0 chr13 105505377 105505692 -14239206 + AluSx SINE Alu 1 312 0 5048 95 5 1 chr13 105506388 105507158 -14237740 - L1P3 LINE L1 -2969 3492 2720 2355 90 6 0 chr13 105507152 105507496 -14237402 + L1P LINE L1 1949 2294 -3852 * 9001 86 36 8 chr13 105507495 105508820 -14236078 - L1P3 LINE L1 -5098 1363 2 7532 173 21 23 chr13 105508832 105509033 -14235865 - L1 LINE L1 -3764 3084 2884 2396 70 0 0 chr13 105509033 105509341 -14235557 - AluY SINE Alu 0 308 1 7532 173 21 23 chr13 105509341 105510944 -14233954 - L1 LINE L1 -3964 2884 1285 1466 233 98 62 chr13 105510945 105511080 -14233818 + L1ME LINE L1 4418 4547 -1631 2517 111 6 6 chr13 105511080 105511440 -14233458 - THE1B LTR MaLR 0 364 5 1466 233 98 62 chr13 105511440 105511580 -14233318 + L1ME LINE L1 4547 4681 -1497 237 33 0 0 chr13 105511580 105511610 -14233288 + (CA)n Simple_repeat Simple_repeat 2 31 0 1466 233 98 62 chr13 105511610 105511628 -14233270 + L1ME LINE L1 4681 4697 -1481 1626 165 25 25 chr13 105511628 105511913 -14232985 + AluJo SINE Alu 2 286 -26 1466 233 98 62 chr13 105511913 105512650 -14232248 + L1ME LINE L1 4697 5500 -678 2394 69 0 16 chr13 105512650 105512954 -14231944 + AluY SINE Alu 1 299 -12 1466 233 98 62 chr13 105512954 105513065 -14231833 + L1ME LINE L1 5500 5606 -572 403 228 8 32 chr13 105513184 105513307 -14231591 - LTR28 LTR ERV1 0 1020 901 1642 182 122 101 chr13 105513387 105514117 -14230781 - LTR1B LTR ERV1 -81 745 1 241 312 11 11 chr13 105514188 105514281 -14230617 + L1ME LINE L1 5578 5670 -451 1285 149 0 5 chr13 105514651 105514839 -14230059 - AluJo SINE Alu -125 187 1 1410 168 74 28 chr13 105514893 105515178 -14229720 + AluJb SINE Alu 1 298 -14 2194 117 3 0 chr13 105515575 105515873 -14229025 - AluSx SINE Alu -13 299 1 28 29 0 0 chr13 105516511 105516546 -14228352 + AT_rich Low_complexity Low_complexity 1 35 0 353 289 110 36 chr13 105516944 105517156 -14227742 + L1MC/D LINE L1 5261 5503 -2305 1789 158 36 7 chr13 105517156 105517459 -14227439 - AluJb SINE Alu 0 312 1 353 289 110 36 chr13 105517459 105517547 -14227351 + L1MC/D LINE L1 5503 5583 -2225 275 176 19 15 chr13 105517841 105517925 -14226973 + L1MC/D LINE L1 5759 5842 -302 2282 80 0 26 chr13 105517926 105518228 -14226670 - AluY SINE Alu -17 294 1 1931 159 17 0 chr13 105519734 105520030 -14224868 + AluJb SINE Alu 1 301 -11 2175 122 3 7 chr13 105520061 105520365 -14224533 + AluSq SINE Alu 1 303 -10 195 349 128 0 chr13 105520529 105520638 -14224260 - L2 LINE L2 -12 3301 3179 2175 98 71 0 chr13 105520852 105521188 -14223710 + L1PA13 LINE L1 5804 6163 0 430 191 0 191 chr13 105521666 105521865 -14223033 - MIR SINE MIR 0 262 102 689 303 161 39 chr13 105521868 105522557 -14222341 - L2 LINE L2 -945 2369 1597 1922 92 4 8 chr13 105522571 105522821 -14222077 - AluSc SINE Alu -18 291 43 284 278 32 56 chr13 105523566 105523692 -14221206 + L2 LINE L2 3118 3240 -73 189 0 0 0 chr13 105523748 105523769 -14221129 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 253 276 79 63 chr13 105524453 105524580 -14220318 - MIR3 SINE MIR -78 130 2 2189 117 0 0 chr13 105524965 105525264 -14219634 - AluSg SINE Alu -11 299 1 306 241 200 14 chr13 105526875 105527020 -14217878 + MARNA DNA Mariner 280 451 -135 26 0 0 0 chr13 105527178 105527204 -14217694 + AT_rich Low_complexity Low_complexity 1 26 0 298 218 0 0 chr13 105527660 105527715 -14217183 + MIR SINE MIR 65 119 -143 589 276 83 13 chr13 105527743 105527971 -14216927 + MIR SINE MIR 7 250 -12 265 173 27 93 chr13 105528142 105528217 -14216681 + AluJb SINE Alu 67 136 -166 397 296 63 13 chr13 105528795 105528954 -14215944 + MIR SINE MIR 46 212 -50 25 31 0 0 chr13 105530414 105530446 -14214452 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr13 105530796 105530831 -14214067 + AT_rich Low_complexity Low_complexity 1 35 0 625 251 0 32 chr13 105531592 105531779 -14213119 + L1MC5 LINE L1 7733 7913 -48 2151 114 19 0 chr13 105532165 105532472 -14212426 - AluSq SINE Alu 0 313 1 2223 118 0 0 chr13 105532793 105533089 -14211809 - AluSg SINE Alu -14 296 1 22 0 0 0 chr13 105533104 105533126 -14211772 + AT_rich Low_complexity Low_complexity 1 22 0 180 97 0 0 chr13 105533787 105533818 -14211080 + (T)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr13 105533990 105534020 -14210878 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 105534544 105534570 -14210328 + AT_rich Low_complexity Low_complexity 1 26 0 1337 145 54 15 chr13 105534860 105535152 -14209746 - MSTA LTR MaLR 0 428 93 2032 128 70 24 chr13 105535152 105535480 -14209418 - MER61A LTR ERV1 0 343 1 26745 82 33 21 chr13 105535480 105537314 -14207584 - MER61A-int LTR ERV1 0 5217 3406 2349 88 14 0 chr13 105537314 105537608 -14207290 - AluSc SINE Alu -7 302 5 26745 82 33 21 chr13 105537608 105537970 -14206928 - MER61A-int LTR ERV1 -1811 3406 3050 2180 88 10 36 chr13 105537970 105538276 -14206622 + AluSp SINE Alu 1 298 -15 26745 82 33 21 chr13 105538276 105539416 -14205482 - MER61A-int LTR ERV1 -2167 3050 1781 2094 131 0 3 chr13 105539416 105539714 -14205184 + AluSx SINE Alu 1 297 -15 26745 82 33 21 chr13 105539714 105540182 -14204716 - MER61A-int LTR ERV1 -3436 1781 1320 2554 167 20 64 chr13 105540212 105540867 -14204031 - MER61A-int LTR ERV1 -4510 707 1 1639 164 109 10 chr13 105540869 105541180 -14203718 - MER61A LTR ERV1 -1 342 1 562 175 0 10 chr13 105541180 105541277 -14203621 - MSTA LTR MaLR -330 96 1 2034 118 38 10 chr13 105541318 105541607 -14203291 - AluSx SINE Alu -15 297 1 2059 128 0 0 chr13 105541766 105542088 -14202810 - AluSc SINE Alu 0 322 1 535 204 21 108 chr13 105542455 105542684 -14202214 + L1MC4 LINE L1 6427 6595 -1213 337 150 238 0 chr13 105542693 105542773 -14202125 + L1MC4a LINE L1 7243 7341 -467 1393 129 29 5 chr13 105542773 105542983 -14201915 - AluSg/x SINE Alu -12 300 86 1112 194 176 33 chr13 105542984 105543107 -14201791 + L1MC4 LINE L1 7413 7517 -525 1926 183 11 30 chr13 105543107 105543479 -14201419 - MLT1A1 LTR MaLR 0 365 1 1112 194 176 33 chr13 105543479 105543691 -14201207 + L1MC4 LINE L1 7517 7796 -246 273 303 0 0 chr13 105543732 105543808 -14201090 - L1MC4 LINE L1 -246 7796 7721 242 229 16 0 chr13 105543813 105543874 -14201024 + L1MC4 LINE L1 7804 7865 -177 503 222 0 3 chr13 105543875 105543995 -14200903 + L1MC4 LINE L1 7651 8040 -2 24 32 0 0 chr13 105544524 105544555 -14200343 + AT_rich Low_complexity Low_complexity 1 31 0 418 209 231 8 chr13 105545139 105545273 -14199625 - MIR SINE MIR -3 259 96 1573 180 7 14 chr13 105546678 105546967 -14197931 + AluJo SINE Alu 10 296 -16 2141 113 24 0 chr13 105547738 105548029 -14196869 - AluSx SINE Alu -14 298 1 276 30 0 0 chr13 105548060 105548093 -14196805 + (TG)n Simple_repeat Simple_repeat 2 34 0 2009 106 35 7 chr13 105548094 105548376 -14196522 - AluSg1 SINE Alu -19 290 1 2426 79 3 0 chr13 105548389 105548694 -14196204 - AluSp SINE Alu -7 306 1 240 333 60 30 chr13 105549006 105549174 -14195724 - L2 LINE L2 -588 2726 2554 202 345 139 5 chr13 105549625 105549819 -14195079 + L2 LINE L2 966 1185 -2129 2070 122 20 3 chr13 105550121 105550415 -14194483 + AluSg SINE Alu 12 310 0 232 268 86 81 chr13 105550492 105550690 -14194208 + L2 LINE L2 2853 3051 -221 2438 103 0 0 chr13 105550740 105551050 -14193848 + AluSx SINE Alu 1 310 -2 1693 167 13 33 chr13 105551841 105552140 -14192758 + AluJb SINE Alu 1 293 -19 1961 117 21 14 chr13 105552479 105552769 -14192129 + AluSx SINE Alu 5 296 -16 310 292 124 20 chr13 105553018 105553220 -14191678 - L1MDa LINE L1 -4547 1993 1771 2364 92 0 0 chr13 105553231 105553535 -14191363 - AluSx SINE Alu -8 304 1 553 128 20 0 chr13 105553569 105553671 -14191227 + CT-rich Low_complexity Low_complexity 2 105 0 1771 149 22 32 chr13 105553673 105553988 -14190910 - AluJo SINE Alu 0 312 1 204 299 23 40 chr13 105554259 105554433 -14190465 + T-rich Low_complexity Low_complexity 2 172 0 1564 120 62 118 chr13 105555546 105555903 -14188995 - MER2 DNA MER2_type 0 345 9 22 35 0 0 chr13 105558348 105558377 -14186521 + AT_rich Low_complexity Low_complexity 1 29 0 1969 128 0 4 chr13 105558486 105558797 -14186101 + AluSx SINE Alu 3 312 0 689 245 61 11 chr13 105559420 105559613 -14185285 - MIR SINE MIR 0 262 80 1496 157 4 30 chr13 105559613 105559881 -14185017 - AluJb SINE Alu -11 301 41 221 57 29 0 chr13 105559885 105559920 -14184978 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 689 245 61 11 chr13 105559920 105559956 -14184942 - MIR SINE MIR -184 78 16 284 275 156 9 chr13 105559986 105560095 -14184803 - MIR SINE MIR -133 129 5 678 233 105 6 chr13 105560162 105560334 -14184564 - MER5A DNA MER1_type 0 189 1 235 353 36 68 chr13 105560380 105560658 -14184240 - L2 LINE L2 -479 2835 2567 39 92 0 7 chr13 105561058 105561171 -14183727 + AT_rich Low_complexity Low_complexity 1 114 -26 2153 122 0 0 chr13 105561171 105561457 -14183441 - AluSx SINE Alu -26 286 1 39 92 0 7 chr13 105561457 105561484 -14183414 + AT_rich Low_complexity Low_complexity 114 140 0 2245 81 37 0 chr13 105561545 105561841 -14183057 + AluSp SINE Alu 1 307 -6 259 293 121 39 chr13 105562007 105562239 -14182659 - L1ME3A LINE L1 -228 5942 5692 613 239 96 29 chr13 105562410 105562619 -14182279 - MIR SINE MIR 0 262 40 583 206 60 51 chr13 105562636 105562873 -14182025 - L1ME3A LINE L1 -648 5514 5273 2403 83 0 0 chr13 105563146 105563446 -14181452 + AluY SINE Alu 12 311 0 296 121 0 34 chr13 105563458 105563739 -14181159 + AluSx SINE Alu 1 324 0 3119 133 36 28 chr13 105564374 105564906 -14179992 - L1MB3 LINE L1 -216 5967 5432 2910 149 175 20 chr13 105565314 105565926 -14178972 - MER39 LTR ERV1 0 707 1 1435 169 8 26 chr13 105566613 105566975 -14177923 - MSTB LTR MaLR 0 426 1 3099 125 55 145 chr13 105567170 105567312 -14177586 - MER51A LTR ERV1 0 634 481 2251 125 3 0 chr13 105567312 105567623 -14177275 + AluSq SINE Alu 1 312 -1 3099 125 55 145 chr13 105567623 105568177 -14176721 - MER51A LTR ERV1 -153 481 1 24 53 0 0 chr13 105569065 105569103 -14175795 + AT_rich Low_complexity Low_complexity 1 38 0 1966 134 24 3 chr13 105569225 105569517 -14175381 - AluSq SINE Alu -11 302 5 283 165 71 24 chr13 105569525 105569610 -14175288 - Charlie5 DNA MER1_type -31 2581 2493 273 226 0 0 chr13 105569610 105569663 -14175235 + LTR47A LTR ERVL 1 53 -399 1669 161 40 10 chr13 105569698 105569996 -14174902 - AluJb SINE Alu -4 308 2 1454 244 38 10 chr13 105569999 105570393 -14174505 + LTR47B LTR ERVL 39 443 0 227 211 0 0 chr13 105570393 105570450 -14174448 - Charlie5 DNA MER1_type -154 2458 2402 * 1130 191 115 0 chr13 105570443 105570678 -14174220 - Charlie5 DNA MER1_type -2343 269 8 25 0 0 0 chr13 105571062 105571087 -14173811 + AT_rich Low_complexity Low_complexity 1 25 0 486 0 0 0 chr13 105571708 105571762 -14173136 + (TA)n Simple_repeat Simple_repeat 1 54 0 23 33 0 0 chr13 105572091 105572121 -14172777 + AT_rich Low_complexity Low_complexity 1 30 0 2381 109 0 0 chr13 105573534 105573845 -14171053 - AluSx SINE Alu -1 311 1 189 0 0 0 chr13 105573847 105573868 -14171030 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 508 285 248 16 chr13 105574137 105574714 -14170184 - L2 LINE L2 -26 3287 2579 331 225 38 12 chr13 105574717 105574797 -14170101 + Cheshire DNA MER1_type 41 122 -2298 1071 185 28 24 chr13 105574804 105575015 -14169883 + AluJo SINE Alu 85 296 -16 347 248 33 50 chr13 105575017 105575138 -14169760 + Cheshire DNA MER1_type 120 238 -2182 313 222 139 9 chr13 105575138 105575246 -14169652 + Cheshire DNA MER1_type 1375 1496 -924 224 298 87 29 chr13 105575262 105575366 -14169532 + MIR3 SINE MIR 93 202 -6 271 380 127 17 chr13 105575408 105575700 -14169198 + L2 LINE L2 2594 2917 -397 1713 84 4 13 chr13 105575754 105575979 -14168919 - AluSx SINE Alu -13 299 77 2603 62 3 0 chr13 105575983 105576290 -14168608 - AluY SINE Alu -1 310 3 637 149 0 0 chr13 105576290 105576377 -14168521 - AluSx SINE Alu -225 87 1 2143 152 91 15 chr13 105576472 105576868 -14168030 - MSTB1 LTR MaLR 0 432 7 3405 150 48 44 chr13 105576876 105577563 -14167335 - L1MA8 LINE L1 -42 6249 5560 1963 139 33 0 chr13 105577580 105577882 -14167016 - AluSx SINE Alu 0 312 1 2163 100 14 3 chr13 105578656 105578945 -14165953 + AluSq SINE Alu 1 292 -21 2023 112 66 3 chr13 105578960 105579246 -14165652 + AluSq SINE Alu 1 304 -9 2218 113 7 16 chr13 105579734 105580044 -14164854 - AluSg SINE Alu -3 307 1 24 32 0 0 chr13 105580225 105580256 -14164642 + AT_rich Low_complexity Low_complexity 1 31 0 1910 170 123 31 chr13 105580323 105580792 -14164106 - L1MB8 LINE L1 -1 6177 5676 1902 136 14 11 chr13 105581052 105581339 -14163559 - AluSx SINE Alu -24 288 1 279 191 42 78 chr13 105581628 105581656 -14163242 - L1P5 LINE L1 -694 5462 5435 2099 112 0 36 chr13 105581656 105581960 -14162938 + AluSg SINE Alu 1 293 -17 279 191 42 78 chr13 105581960 105582076 -14162822 - L1P5 LINE L1 -721 5435 5327 269 146 36 0 chr13 105582371 105582426 -14162472 - L1ME4a LINE L1 0 6121 6065 2040 161 39 43 chr13 105582450 105582866 -14162032 - MLT2D LTR ERVL 0 414 1 286 239 165 0 chr13 105583095 105583204 -14161694 + L2 LINE L2 2295 2421 -893 726 39 39 61 chr13 105583226 105583544 -14161354 + (TCTCC)n Simple_repeat Simple_repeat 1 310 0 * 848 77 59 0 chr13 105583538 105583707 -14161191 + CT-rich Low_complexity Low_complexity 1 179 0 437 151 78 0 chr13 105583721 105583887 -14161011 + CT-rich Low_complexity Low_complexity 1 179 0 207 111 111 0 chr13 105583904 105583949 -14160949 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 827 321 18 37 chr13 105584093 105584529 -14160369 + L2 LINE L2 2884 3311 -2 206 255 10 51 chr13 105584566 105584594 -14160304 + A-rich Low_complexity Low_complexity 1 29 -65 1544 141 83 29 chr13 105584594 105584871 -14160027 + AluJb SINE Alu 1 292 -20 206 255 10 51 chr13 105584871 105584892 -14160006 + A-rich Low_complexity Low_complexity 29 49 -45 1868 110 4 8 chr13 105584892 105585147 -14159751 + AluSq SINE Alu 1 254 -59 206 255 10 51 chr13 105585147 105585194 -14159704 + A-rich Low_complexity Low_complexity 49 94 0 223 233 0 0 chr13 105585150 105585193 -14159705 + GA-rich Low_complexity Low_complexity 3 45 0 304 281 35 53 chr13 105585237 105585351 -14159547 - MIR SINE MIR -67 141 30 188 33 0 33 chr13 105585523 105585553 -14159345 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2194 72 0 34 chr13 105585555 105585846 -14159052 - AluY SINE Alu -30 281 1 394 182 0 3 chr13 105586682 105586764 -14158134 + AluJ/FLAM SINE Alu 1 63 -239 305 269 21 55 chr13 105586771 105586916 -14157982 - L2 LINE L2 -143 3170 3031 361 303 146 8 chr13 105587098 105587352 -14157546 - L1ME3A LINE L1 -219 5951 5663 2196 133 0 0 chr13 105587372 105587672 -14157226 - AluSx SINE Alu -12 300 1 371 203 203 7 chr13 105587711 105587854 -14157044 - L1ME3A LINE L1 -631 5535 5365 3573 177 72 62 chr13 105588040 105588985 -14155913 - LTR13 LTR ERVK 0 954 1 1867 222 48 14 chr13 105589017 105589459 -14155439 - LTR40b LTR ERVL 0 462 6 631 106 154 10 chr13 105589866 105589970 -14154928 + FLAM_C SINE Alu 2 120 -23 844 101 0 74 chr13 105589970 105590159 -14154739 + (CA)n Simple_repeat Simple_repeat 1 175 0 842 217 0 0 chr13 105590161 105590322 -14154576 + FRAM SINE Alu 1 161 -5 1840 201 63 20 chr13 105590546 105590988 -14153910 - MLT1C LTR MaLR -1 466 6 205 261 109 11 chr13 105591200 105591292 -14153606 - MIR SINE MIR -114 148 48 1391 217 98 15 chr13 105591397 105591734 -14153164 - MLT1A2 LTR MaLR -9 365 1 23 78 0 0 chr13 105592262 105592313 -14152585 + AT_rich Low_complexity Low_complexity 1 51 0 207 0 0 0 chr13 105595009 105595032 -14149866 + (T)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 105595641 105595664 -14149234 + AT_rich Low_complexity Low_complexity 1 23 0 355 325 108 28 chr13 105595921 105596133 -14148765 + MIR SINE MIR 34 262 0 241 321 12 12 chr13 105596759 105596840 -14148058 - MER5A DNA MER1_type 0 189 109 833 179 73 0 chr13 105597274 105597425 -14147473 - MER20 DNA MER1_type -17 202 41 1721 100 0 0 chr13 105598312 105598555 -14146343 + AluSg/x SINE Alu 65 307 0 2216 97 3 0 chr13 105599052 105599341 -14145557 - AluY SINE Alu -20 291 2 6997 120 46 6 chr13 105599342 105600414 -14144484 - Tigger1 DNA MER2_type -629 1789 675 1141 82 0 0 chr13 105600415 105600550 -14144348 + AluSq/x SINE Alu 1 135 -178 2477 76 3 0 chr13 105600602 105600903 -14143995 + AluSp SINE Alu 1 302 -11 1995 110 3 14 chr13 105601169 105601485 -14143413 + AluSg SINE Alu 1 313 0 215 91 0 23 chr13 105602327 105602371 -14142527 + (TAAAAA)n Simple_repeat Simple_repeat 2 44 0 743 180 78 30 chr13 105602380 105602547 -14142351 + FAM SINE Alu 1 175 0 4146 133 30 26 chr13 105602547 105603226 -14141672 - Tigger1 DNA MER2_type -1737 681 1 2087 173 29 4 chr13 105603574 105603995 -14140903 - MER61D LTR ERV1 -6 495 15 1073 192 133 27 chr13 105604087 105604425 -14140473 - MER74B LTR ERVL 0 622 249 22 0 0 0 chr13 105604543 105604565 -14140333 + AT_rich Low_complexity Low_complexity 1 22 0 288 298 175 0 chr13 105605264 105605378 -14139520 + MIR3 SINE MIR 55 188 -20 24 0 0 0 chr13 105605821 105605845 -14139053 + AT_rich Low_complexity Low_complexity 1 24 0 390 69 0 0 chr13 105606113 105606171 -14138727 + (TC)n Simple_repeat Simple_repeat 1 58 0 1944 125 29 11 chr13 105606174 105606453 -14138445 - AluJb SINE Alu -28 284 1 311 219 68 0 chr13 105606531 105606604 -14138294 - L1MB8 LINE L1 0 6178 6101 301 172 0 0 chr13 105606635 105606693 -14138205 - MER53 DNA DNA -45 144 87 892 201 0 0 chr13 105606735 105606884 -14138014 - FRAM SINE Alu -17 149 1 3098 173 65 11 chr13 105606885 105607520 -14137378 - L1MB7 LINE L1 -68 6116 5448 521 272 41 0 chr13 105608785 105608954 -14135944 + MIR SINE MIR 72 247 -15 2304 182 41 2 chr13 105611009 105611427 -14133471 - Tigger2a DNA MER2_type 0 434 1 3654 175 72 13 chr13 105612561 105612949 -14131949 - MER44D DNA MER2_type -1882 605 285 1928 160 0 0 chr13 105612949 105613242 -14131656 + AluJb SINE Alu 2 294 -18 3654 175 72 13 chr13 105613242 105613545 -14131353 - MER44D DNA MER2_type -2202 285 1 21 57 0 0 chr13 105613662 105613697 -14131201 + AT_rich Low_complexity Low_complexity 1 35 0 978 127 24 18 chr13 105614249 105614414 -14130484 - AluSp SINE Alu 0 313 148 818 81 0 0 chr13 105614414 105614513 -14130385 + AluS SINE Alu 4 102 -211 204 224 0 20 chr13 105617492 105617541 -14127357 - MIR SINE MIR -140 122 75 517 287 16 29 chr13 105618015 105618259 -14126639 + L1ME4a LINE L1 5655 5895 -226 1791 172 0 30 chr13 105618303 105618605 -14126293 + AluJb SINE Alu 1 293 -19 571 175 80 7 chr13 105619169 105619306 -14125592 + MER103 DNA DNA 13 159 -7 1649 162 20 34 chr13 105619405 105619701 -14125197 - AluJo SINE Alu -20 292 1 21 0 0 0 chr13 105619708 105619729 -14125169 + AT_rich Low_complexity Low_complexity 1 21 0 2100 92 4 4 chr13 105619758 105620053 -14124845 - AluSp SINE Alu 0 308 14 1352 170 9 108 chr13 105620164 105620487 -14124411 + AluJo SINE Alu 1 291 -11 593 242 60 39 chr13 105620666 105620696 -14124202 + MER58A DNA MER1_type 39 67 -2353 2615 34 0 10 chr13 105620696 105620992 -14123906 + AluY SINE Alu 1 293 -18 593 242 60 39 chr13 105620992 105621143 -14123755 + MER58A DNA MER1_type 67 224 0 304 179 54 0 chr13 105621356 105621412 -14123486 - MER92C LTR ERV1 -2 552 494 487 248 33 0 chr13 105621522 105621643 -14123255 - MER92B LTR ERV1 -511 125 1 645 217 76 5 chr13 105622243 105622427 -14122471 - L1ME1 LINE L1 -4 6162 5966 212 270 45 11 chr13 105622445 105622534 -14122364 - MIR SINE MIR -62 200 109 735 256 6 0 chr13 105622595 105622775 -14122123 - MER5A DNA MER1_type -8 181 1 25 0 0 0 chr13 105623502 105623527 -14121371 + AT_rich Low_complexity Low_complexity 1 25 0 2425 76 0 0 chr13 105623814 105624104 -14120794 - AluY SINE Alu -19 292 3 2834 141 80 27 chr13 105624202 105624962 -14119936 + LTR1B LTR ERV1 1 826 0 2125 110 4 0 chr13 105625581 105625893 -14119005 + AluSc SINE Alu 1 313 0 2391 62 24 0 chr13 105626078 105626369 -14118529 + AluSp SINE Alu 1 298 -15 767 199 53 0 chr13 105626701 105626872 -14118026 + MER20 DNA MER1_type 3 182 -37 2054 202 48 115 chr13 105627504 105627637 -14117261 - L1MC3 LINE L1 0 8039 7899 213 39 0 0 chr13 105627637 105627663 -14117235 + (TC)n Simple_repeat Simple_repeat 2 27 0 2054 202 48 115 chr13 105627663 105628325 -14116573 - L1MC3 LINE L1 -140 7899 7309 361 341 85 19 chr13 105628392 105628650 -14116248 - L2 LINE L2 -159 3113 2839 31 0 0 0 chr13 105629131 105629162 -14115736 + AT_rich Low_complexity Low_complexity 1 31 0 1801 166 10 7 chr13 105629536 105629844 -14115054 - AluJo SINE Alu -3 309 1 21 0 0 75 chr13 105629912 105629952 -14114946 + AT_rich Low_complexity Low_complexity 1 37 0 817 143 25 66 chr13 105630166 105630362 -14114536 - L1MB5 LINE L1 -9 6165 5978 346 231 0 0 chr13 105630368 105630433 -14114465 - L1MB5 LINE L1 -278 5896 5832 21 36 0 0 chr13 105632021 105632049 -14112849 + AT_rich Low_complexity Low_complexity 1 28 0 2131 83 13 30 chr13 105632538 105632838 -14112060 + AluSg SINE Alu 1 295 -15 905 217 5 0 chr13 105632896 105633080 -14111818 - L1PB4 LINE L1 -3 6153 5969 694 184 81 40 chr13 105633200 105633268 -14111630 + MER5A DNA MER1_type 9 73 -116 1983 103 0 7 chr13 105633268 105633580 -14111318 + AluSg SINE Alu 1 310 0 694 184 81 40 chr13 105633580 105633684 -14111214 + MER5A DNA MER1_type 73 189 0 2305 64 3 17 chr13 105634885 105635182 -14109716 + AluSp SINE Alu 1 293 -20 1699 164 0 14 chr13 105635298 105635579 -14109319 + AluJb SINE Alu 1 277 -35 296 294 182 21 chr13 105636295 105636331 -14108567 - MIR SINE MIR -44 218 189 2079 96 7 10 chr13 105636331 105636624 -14108274 + AluSc SINE Alu 1 292 -17 296 294 182 21 chr13 105636624 105636774 -14108124 - MIR SINE MIR -73 189 2 1356 166 77 8 chr13 105637264 105637523 -14107375 + AluJb SINE Alu 6 282 -30 195 42 0 0 chr13 105638051 105638075 -14106823 + (CGGGGG)n Simple_repeat Simple_repeat 4 27 0 2151 107 0 3 chr13 105639324 105639632 -14105266 - AluSg SINE Alu -3 307 1 368 20 0 20 chr13 105641487 105641537 -14103361 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 227 30 0 30 chr13 105648413 105648446 -14096452 + (TG)n Simple_repeat Simple_repeat 2 33 0 396 0 0 0 chr13 105648723 105648767 -14096131 + (TG)n Simple_repeat Simple_repeat 2 45 0 2439 17 41 0 chr13 105652042 105652334 -14092564 + AluY SINE Alu 1 304 -7 26 0 0 0 chr13 105652455 105652481 -14092417 + AT_rich Low_complexity Low_complexity 1 26 0 342 0 0 0 chr13 105656051 105656089 -14088809 + (TG)n Simple_repeat Simple_repeat 2 39 0 1978 131 0 0 chr13 105656266 105656548 -14088350 + AluSx SINE Alu 1 282 -30 632 47 0 121 chr13 105656550 105656740 -14088158 + (TAGA)n Simple_repeat Simple_repeat 2 168 0 1208 158 85 12 chr13 105658785 105659031 -14085867 - L1MB8 LINE L1 0 6178 5915 471 266 113 0 chr13 105664434 105664558 -14080340 - MER58 DNA MER1_type -2263 157 20 254 343 117 0 chr13 105666710 105666847 -14078051 - MIR3 SINE MIR -23 185 33 321 254 215 0 chr13 105666933 105667063 -14077835 - HAL1 LINE L1 -83 2424 2267 468 198 31 10 chr13 105667099 105667195 -14077703 + MIR SINE MIR 72 169 -93 577 250 36 26 chr13 105667299 105667491 -14077407 - HAL1 LINE L1 -300 2207 2014 1003 242 221 15 chr13 105667687 105668344 -14076554 - HAL1 LINE L1 -877 1630 839 279 259 67 15 chr13 105668434 105668569 -14076329 - HAL1 LINE L1 -1952 555 414 392 246 179 24 chr13 105669720 105669918 -14074980 - MIR SINE MIR -32 230 8 923 113 40 0 chr13 105670111 105670261 -14074637 - L1MB2 LINE L1 -7 6164 6009 5428 187 60 7 chr13 105670291 105671500 -14073398 - L1 LINE L1 -1364 4782 3510 1067 216 107 40 chr13 105671951 105672372 -14072526 - L1 LINE L1 -2624 3522 3074 247 322 11 11 chr13 105672992 105673079 -14071819 + MIR SINE MIR 45 131 -77 2375 78 3 0 chr13 105674874 105675181 -14069717 - AluSg SINE Alu -2 308 1 282 283 50 50 chr13 105676877 105677057 -14067841 - MIR SINE MIR -20 242 63 244 272 98 54 chr13 105677299 105677391 -14067507 + MER45B DNA AcHobo 85 180 -860 1142 226 154 24 chr13 105677465 105677755 -14067143 + MER45B DNA AcHobo 370 732 -308 2390 65 0 7 chr13 105677755 105678065 -14066833 + AluY SINE Alu 1 308 -3 1142 226 154 24 chr13 105678065 105678190 -14066708 + MER45B DNA AcHobo 732 839 -201 798 233 29 0 chr13 105678193 105678365 -14066533 + AluJb SINE Alu 124 300 -12 612 215 93 29 chr13 105678938 105679160 -14065738 + L1ME2 LINE L1 5936 6332 -2 1856 122 42 3 chr13 105680742 105681028 -14063870 + AluSq SINE Alu 1 297 -16 504 0 0 0 chr13 105681976 105682032 -14062866 + (CA)n Simple_repeat Simple_repeat 2 57 0 378 0 0 0 chr13 105682094 105682136 -14062762 + (CA)n Simple_repeat Simple_repeat 2 43 0 2537 64 0 0 chr13 105682679 105682976 -14061922 + AluY SINE Alu 1 297 -14 265 244 163 22 chr13 105683927 105684062 -14060836 - MIR SINE MIR -80 182 29 573 299 49 12 chr13 105684890 105685134 -14059764 + L1ME LINE L1 5570 5822 -348 2097 135 0 0 chr13 105685240 105685537 -14059361 + AluSg SINE Alu 1 297 -13 643 238 61 69 chr13 105686133 105686495 -14058403 + L1MC5 LINE L1 7540 7898 -63 4743 227 55 43 chr13 105686518 105686919 -14057979 + L1ME LINE L1 3275 3670 -2476 1830 148 0 48 chr13 105686919 105687230 -14057668 + AluJo SINE Alu 1 296 -16 724 188 23 0 chr13 105687231 105687359 -14057539 + FLAM_C SINE Alu 3 133 0 4743 227 55 43 chr13 105687359 105688312 -14056586 + L1ME LINE L1 3670 4611 -1535 1348 69 0 11 chr13 105688312 105688486 -14056412 + L1MA1 LINE L1 6131 6302 0 4743 227 55 43 chr13 105688486 105688554 -14056344 + L1ME LINE L1 4611 4677 -1469 1900 128 3 58 chr13 105688554 105688867 -14056031 - AluSx SINE Alu -16 296 1 4743 227 55 43 chr13 105688867 105688959 -14055939 + L1ME LINE L1 4677 4810 -1336 554 183 65 14 chr13 105688959 105689108 -14055790 + L1MB7 LINE L1 6032 6178 0 * 1563 191 158 15 chr13 105689106 105689573 -14055325 + L1ME LINE L1 4797 5330 -816 2265 90 13 7 chr13 105689578 105689878 -14055020 + AluSp SINE Alu 1 302 -11 620 161 34 17 chr13 105689898 105690016 -14054882 + FLAM_C SINE Alu 23 142 -1 980 172 83 20 chr13 105690016 105690220 -14054678 + L1ME LINE L1 5320 5536 -630 463 304 20 35 chr13 105690347 105690405 -14054493 - MIR SINE MIR -55 207 150 2080 130 52 6 chr13 105690405 105690750 -14054148 + MER46B DNA MER2_type 1 236 0 463 304 20 35 chr13 105690750 105690892 -14054006 - MIR SINE MIR -112 150 10 1757 167 20 10 chr13 105691762 105692061 -14052837 + AluSx SINE Alu 1 302 -10 12047 182 27 17 chr13 105692487 105695128 -14049770 + L1M1 LINE L1 3395 6076 -1489 474 213 0 0 chr13 105695319 105695413 -14049485 + MER92B LTR ERV1 543 636 0 25 0 0 0 chr13 105695595 105695620 -14049278 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 105696059 105696087 -14048811 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 105696251 105696281 -14048617 + AT_rich Low_complexity Low_complexity 1 30 0 1910 108 0 128 chr13 105696680 105697015 -14047883 - AluSx SINE Alu -10 292 1 2236 58 65 3 chr13 105697764 105698055 -14046843 - AluY SINE Alu 0 311 3 394 282 55 0 chr13 105698236 105698346 -14046552 + MIR SINE MIR 11 126 -136 2337 82 0 16 chr13 105698852 105699155 -14045743 + AluSc SINE Alu 1 298 -11 1343 140 18 0 chr13 105699155 105699377 -14045521 - Tigger1 DNA MER2_type -2192 226 1 2127 137 0 3 chr13 105699449 105699799 -14045099 - AluSx SINE Alu 0 349 1 328 235 51 31 chr13 105699871 105699969 -14044929 + MIR SINE MIR 97 196 -66 2286 107 0 3 chr13 105700061 105700360 -14044538 - AluSg SINE Alu -12 298 1 2549 63 0 0 chr13 105700942 105701245 -14043653 - AluY SINE Alu -6 305 3 546 276 54 87 chr13 105701633 105702079 -14042819 - MLT1J1 LTR MaLR 0 446 16 617 176 92 142 chr13 105702142 105702403 -14042495 - HsTC2 DNA Tc2 -35 1863 1616 5163 60 68 5 chr13 105702405 105703066 -14041832 - L1PA7 LINE L1 0 6154 5452 348 178 2 0 chr13 105703081 105703151 -14041747 + Alu SINE Alu 224 283 -17 8096 136 49 29 chr13 105703305 105704099 -14040799 + Tigger2 DNA MER2_type 277 1054 -1664 1892 160 7 0 chr13 105704099 105704392 -14040506 + AluSx SINE Alu 3 297 -15 8096 136 49 29 chr13 105704392 105704475 -14040423 + Tigger2 DNA MER2_type 1054 1134 -1584 2371 67 0 7 chr13 105704475 105704773 -14040125 + AluY SINE Alu 1 296 -15 8096 136 49 29 chr13 105704773 105705274 -14039624 + Tigger2 DNA MER2_type 1134 1683 -1035 1613 234 44 0 chr13 105705376 105705761 -14039137 - L1M4 LINE L1 -1943 4203 3802 501 167 0 0 chr13 105705783 105705855 -14039043 - tRNA-Glu-GAG tRNA tRNA -3 72 1 1486 203 103 32 chr13 105707297 105707667 -14037231 - MLT1D LTR MaLR -2 503 108 1801 156 0 48 chr13 105707671 105707985 -14036913 + AluSx SINE Alu 1 299 -13 212 315 18 45 chr13 105708022 105708133 -14036765 - L2 LINE L2 -218 3095 2988 2380 98 0 0 chr13 105708182 105708477 -14036421 + AluSq SINE Alu 1 295 -18 21 0 0 0 chr13 105708773 105708794 -14036104 + AT_rich Low_complexity Low_complexity 1 21 0 205 215 31 31 chr13 105709138 105709203 -14035695 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 209 274 20 0 chr13 105709340 105709391 -14035507 + GA-rich Low_complexity Low_complexity 5 56 0 944 197 73 19 chr13 105709418 105709694 -14035204 + L1MC5 LINE L1 6959 7247 -728 226 255 71 31 chr13 105709734 105709832 -14035066 + L1MC4a LINE L1 7266 7367 -441 * 1762 186 36 91 chr13 105709810 105710450 -14034448 + L1MC5 LINE L1 7256 7860 -101 2192 156 12 6 chr13 105710459 105710805 -14034093 - MER7A DNA MER2_type 0 346 1 1906 136 7 14 chr13 105710859 105711154 -14033744 + AluSx SINE Alu 4 296 -16 2059 112 7 0 chr13 105712170 105712455 -14032443 - AluSx SINE Alu -25 287 1 2244 95 3 10 chr13 105712461 105712765 -14032133 - AluSx SINE Alu -10 302 1 338 39 19 39 chr13 105713918 105713970 -14030928 - L1MB8 LINE L1 -2 6176 6126 1028 209 40 39 chr13 105715001 105715404 -14029494 - L1ME1 LINE L1 -1 6165 5717 410 183 0 0 chr13 105715532 105715619 -14029279 + AluS SINE Alu 223 309 0 419 257 103 43 chr13 105715625 105716071 -14028827 + L1MC/D LINE L1 5013 5479 -747 28 71 0 0 chr13 105716121 105716177 -14028721 + AT_rich Low_complexity Low_complexity 1 56 0 2147 126 3 0 chr13 105716188 105716481 -14028417 - AluSq SINE Alu -19 294 1 400 319 22 30 chr13 105716500 105716732 -14028166 + L1MC/D LINE L1 5526 5755 -2053 223 303 0 15 chr13 105717182 105717248 -14027650 - L2 LINE L2 0 3313 3249 186 286 157 0 chr13 105717512 105717582 -14027316 - MIR SINE MIR -14 248 168 304 326 53 44 chr13 105718129 105718356 -14026542 + L1MEd LINE L1 445 673 -5446 561 167 0 39 chr13 105718632 105718734 -14026164 + U6 snRNA snRNA 10 107 0 1166 266 66 70 chr13 105718787 105719564 -14025334 + HAL1 LINE L1 991 1764 -743 2492 104 18 47 chr13 105719905 105720291 -14024607 - THE1C LTR MaLR 0 375 1 10859 107 31 43 chr13 105720293 105721890 -14023008 - THE1C-int LTR MaLR -2 1578 1 2665 103 27 11 chr13 105721890 105722259 -14022639 - THE1C LTR MaLR 0 375 1 386 111 16 16 chr13 105722346 105722409 -14022489 + THE1C LTR MaLR 254 316 -59 788 156 55 0 chr13 105723178 105723306 -14021592 - AluJo SINE Alu -176 136 2 336 295 36 54 chr13 105723308 105723474 -14021424 + MIR SINE MIR 21 183 -79 388 298 52 40 chr13 105723772 105724024 -14020874 + L1PA16 LINE L1 5671 5925 -241 * 2665 131 7 21 chr13 105723810 105724239 -14020659 + L1MB2 LINE L1 5721 6143 -28 1138 147 18 0 chr13 105724255 105724425 -14020473 - FAM SINE Alu -1 174 2 812 183 0 0 chr13 105725211 105725348 -14019550 - FLAM_C SINE Alu -6 137 1 4967 115 81 12 chr13 105725375 105725986 -14018912 + L1PA16 LINE L1 5277 5959 -207 2157 120 0 10 chr13 105725986 105726286 -14018612 + AluSx SINE Alu 1 297 -15 4967 115 81 12 chr13 105726286 105726510 -14018388 + L1PA16 LINE L1 5959 6166 0 1280 164 9 5 chr13 105727260 105727473 -14017425 + AluJo SINE Alu 83 296 -16 1883 235 91 54 chr13 105727943 105728611 -14016287 + L1ME1 LINE L1 5448 6140 -26 338 257 156 13 chr13 105728732 105728831 -14016067 + L1MC5 LINE L1 7505 7588 -373 2241 106 7 0 chr13 105728831 105729166 -14015732 + AluSq SINE Alu 1 313 0 338 257 156 13 chr13 105729166 105729303 -14015595 + L1MC5 LINE L1 7588 7775 -186 231 263 0 0 chr13 105729486 105729566 -14015332 + GA-rich Low_complexity Low_complexity 4 83 0 188 336 134 17 chr13 105730798 105730917 -14013981 - L2 LINE L2 -21 3251 3119 2798 151 90 26 chr13 105731012 105731615 -14013283 + MER39 LTR ERV1 67 707 0 1165 231 155 18 chr13 105731872 105732310 -14012588 + MLT1D LTR MaLR 8 505 0 3196 204 57 29 chr13 105732530 105733301 -14011597 + L1MC3 LINE L1 6305 7097 -688 246 296 35 52 chr13 105733301 105733416 -14011482 + MLT1F1 LTR MaLR 35 147 -420 818 199 7 0 chr13 105733416 105733567 -14011331 + L1MC3 LINE L1 7213 7364 -421 694 194 13 45 chr13 105733774 105733929 -14010969 + L1MC5 LINE L1 6633 6782 -1179 1702 175 46 26 chr13 105734074 105734422 -14010476 + MLT1D LTR MaLR 1 355 -150 400 244 0 0 chr13 105734456 105734546 -14010352 - MIR SINE MIR -166 96 7 336 238 12 0 chr13 105734724 105734808 -14010090 - L1MC5 LINE L1 -60 7901 7817 853 180 6 56 chr13 105735228 105735389 -14009509 - AluJb SINE Alu -24 288 136 1491 252 88 48 chr13 105735847 105736367 -14008531 + L1ME3A LINE L1 5506 6057 -113 2429 86 0 0 chr13 105736367 105736659 -14008239 - AluSg SINE Alu -18 292 1 1491 252 88 48 chr13 105736659 105736777 -14008121 + L1ME3A LINE L1 6057 6169 -1 270 250 0 0 chr13 105737687 105737759 -14007139 + A-rich Low_complexity Low_complexity 1 72 0 763 172 55 7 chr13 105737928 105738073 -14006825 + MLT1B LTR MaLR 239 390 0 1075 247 51 12 chr13 105738073 105738405 -14006493 + L1MB5 LINE L1 5830 6174 0 708 195 0 8 chr13 105738447 105738565 -14006333 + FLAM_A SINE Alu 1 117 -16 180 329 12 12 chr13 105739000 105739082 -14005816 - MER5A DNA MER1_type -52 137 56 211 171 0 0 chr13 105739086 105739121 -14005777 + MER5B DNA MER1_type 120 154 -24 1288 216 110 61 chr13 105740684 105741193 -14003705 + MLT1F1 LTR MaLR 1 559 -8 1849 250 85 15 chr13 105741598 105742793 -14002105 - L1MC4 LINE L1 -164 7878 6458 286 220 35 116 chr13 105742848 105743021 -14001877 - MLT1J LTR MaLR -213 298 140 657 238 38 24 chr13 105743153 105743363 -14001535 - THE1C LTR MaLR 0 375 163 524 281 138 0 chr13 105744169 105744372 -14000526 - MIR SINE MIR -21 241 11 548 290 144 43 chr13 105744416 105744954 -13999944 + L1ME4a LINE L1 5272 5855 -266 186 254 315 22 chr13 105745068 105745249 -13999649 + MIR SINE MIR 15 248 -14 192 77 0 0 chr13 105746302 105746328 -13998570 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 1948 139 0 17 chr13 105746372 105746674 -13998224 + AluSx SINE Alu 13 309 -3 1396 204 4 22 chr13 105746732 105747001 -13997897 + AluJo SINE Alu 1 264 -48 2302 93 0 0 chr13 105748972 105749262 -13995636 + AluSg SINE Alu 3 292 -18 22 0 0 0 chr13 105750040 105750062 -13994836 + GC_rich Low_complexity Low_complexity 1 22 0 2800 20 3 0 chr13 105751045 105751351 -13993547 - AluYa5 SINE Alu -4 307 1 1743 184 0 7 chr13 105751525 105751824 -13993074 - AluJb SINE Alu -15 297 1 400 216 103 103 chr13 105751942 105752127 -13992771 + MER5A DNA MER1_type 2 186 -3 231 243 243 39 chr13 105752148 105752251 -13992647 - MER5A DNA MER1_type 0 189 66 2144 136 126 26 chr13 105752645 105753034 -13991864 - MSTA LTR MaLR 0 428 1 897 218 234 0 chr13 105753486 105753743 -13991155 + MER58B DNA MER1_type 20 336 -5 333 309 86 12 chr13 105754779 105754941 -13989957 - MIR SINE MIR -70 192 19 2174 224 93 5 chr13 105755171 105755786 -13989112 - LTR65 LTR ERV1 0 669 1 832 214 17 17 chr13 105756080 105756258 -13988640 + LTR28 LTR ERV1 1 178 -842 1370 213 30 14 chr13 105756284 105756599 -13988299 + LTR27 LTR ERV1 119 580 -56 1638 151 60 8 chr13 105757226 105757491 -13987407 + AluJo SINE Alu 3 281 -31 22 0 0 0 chr13 105757500 105757522 -13987376 + AT_rich Low_complexity Low_complexity 1 22 0 386 306 68 0 chr13 105757583 105757730 -13987168 - MIR SINE MIR -13 249 93 1022 198 70 22 chr13 105757730 105757957 -13986941 - MLT1C LTR MaLR -2 465 228 942 238 154 13 chr13 105758472 105758851 -13986047 + MLT1G1 LTR MaLR 1 518 -77 382 99 0 84 chr13 105758869 105758940 -13985958 - MLT2D LTR ERVL -349 65 1 2174 116 0 3 chr13 105758940 105759234 -13985664 + AluSx SINE Alu 1 293 -19 319 235 0 59 chr13 105759427 105759529 -13985369 - MER5A DNA MER1_type -83 106 11 1059 188 58 5 chr13 105759551 105759759 -13985139 + MER20 DNA MER1_type 1 219 0 1155 155 69 35 chr13 105760004 105760236 -13984662 + AluJo SINE Alu 68 307 -5 2352 101 3 0 chr13 105760879 105761187 -13983711 - AluSp SINE Alu -4 309 1 222 255 133 0 chr13 105762750 105762848 -13982050 + MIR SINE MIR 56 166 -96 2554 62 7 0 chr13 105763499 105763803 -13981095 - AluY SINE Alu -5 306 1 2384 79 3 0 chr13 105764222 105764512 -13980386 - AluSg SINE Alu -19 291 1 766 204 13 85 chr13 105765187 105765422 -13979476 - MER20 DNA MER1_type -1 218 1 204 40 0 0 chr13 105765816 105765841 -13979057 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 200 217 22 0 chr13 105766359 105766405 -13978493 - L2 LINE L2 -8 3305 3259 351 0 0 0 chr13 105766823 105766862 -13978036 + (CA)n Simple_repeat Simple_repeat 1 39 0 338 125 0 0 chr13 105766862 105766910 -13977988 + (TC)n Simple_repeat Simple_repeat 1 48 0 204 208 0 38 chr13 105767106 105767159 -13977739 + MIR SINE MIR 104 154 -108 16545 45 28 1 chr13 105767968 105770186 -13974712 + L1P LINE L1 2986 5263 -883 248 170 0 0 chr13 105770291 105770344 -13974554 - MER63 DNA MER1_type -951 110 58 456 197 44 73 chr13 105770344 105770378 -13974520 - MER97b DNA MER1_type? -920 133 100 7033 54 17 0 chr13 105770378 105771668 -13973230 - L1PA6 LINE L1 -5 6149 4858 2208 103 0 0 chr13 105771668 105771950 -13972948 - AluSx SINE Alu -30 282 1 456 197 44 73 chr13 105771950 105772051 -13972847 - MER97b DNA MER1_type? -951 102 1 384 296 46 107 chr13 105772051 105772299 -13972599 + L2 LINE L2 2751 2952 -320 2035 121 18 38 chr13 105772299 105772639 -13972259 + MER1B DNA MER1_type 2 334 -3 384 296 46 107 chr13 105772639 105772917 -13971981 + L2 LINE L2 2952 3245 -27 315 210 57 105 chr13 105773325 105773371 -13971527 - MIR SINE MIR -44 218 171 2105 117 0 41 chr13 105773371 105773687 -13971211 + AluSx SINE Alu 1 303 -9 315 210 57 105 chr13 105773687 105773764 -13971134 - MIR SINE MIR -91 171 101 211 279 0 0 chr13 105774093 105774154 -13970744 + MER91 DNA MER1_type 80 140 0 536 303 136 27 chr13 105774548 105774924 -13969974 - MLT1J2 LTR MaLR -8 442 26 408 239 31 116 chr13 105775915 105776047 -13968851 - MIR SINE MIR 0 262 161 2426 75 0 0 chr13 105776047 105776341 -13968557 - AluY SINE Alu -17 294 1 408 239 31 116 chr13 105776341 105776467 -13968431 - MIR SINE MIR -101 161 26 210 118 0 0 chr13 105776775 105776809 -13968089 + (T)n Simple_repeat Simple_repeat 1 34 0 279 322 74 47 chr13 105776812 105776961 -13967937 + L2 LINE L2 2939 3091 -181 439 273 187 0 chr13 105777180 105777367 -13967531 + L3 LINE CR1 1191 1412 -165 6224 61 16 41 chr13 105777395 105777945 -13966953 + L1PB1 LINE L1 5278 5841 -310 2330 106 3 0 chr13 105777945 105778257 -13966641 + AluSp SINE Alu 1 313 0 6224 61 16 41 chr13 105778257 105778404 -13966494 + L1PB1 LINE L1 5841 5990 -161 2010 134 0 3 chr13 105778404 105778708 -13966190 + AluSx SINE Alu 1 303 0 6224 61 16 41 chr13 105778708 105778905 -13965993 + L1PB1 LINE L1 5990 6151 0 1090 235 44 71 chr13 105779060 105779469 -13965429 - LTR37B LTR ERV1 0 468 71 1252 151 88 141 chr13 105779470 105779657 -13965241 - MLT1C LTR MaLR -1 466 271 2457 106 119 10 chr13 105779657 105780043 -13964855 + MSTA LTR MaLR 1 428 0 1252 151 88 141 chr13 105780043 105780268 -13964630 - MLT1C LTR MaLR -196 271 9 239 230 27 27 chr13 105780273 105780347 -13964551 - LTR37B LTR ERV1 -389 79 6 2188 121 10 0 chr13 105780883 105781189 -13963709 - AluSg SINE Alu -1 309 1 432 67 0 0 chr13 105781524 105781584 -13963314 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 1558 184 98 78 chr13 105781584 105782089 -13962809 - MER66A LTR ERV1 0 478 97 2325 161 0 0 chr13 105782121 105782474 -13962424 - MER66A-int LTR ERV1 0 6676 6324 1059 160 17 22 chr13 105782552 105782733 -13962165 - MER66-int LTR ERV1 -1848 4828 4649 10362 117 13 47 chr13 105782733 105783293 -13961605 + THE1C-int LTR MaLR 2 580 -1000 1054 69 0 0 chr13 105783293 105783424 -13961474 - L1PA7 LINE L1 -13 6141 6011 10362 117 13 47 chr13 105783424 105784498 -13960400 + THE1C-int LTR MaLR 580 1580 0 1200 179 79 45 chr13 105784499 105784790 -13960108 + THE1C LTR MaLR 2 302 -73 315 272 44 11 chr13 105784963 105785070 -13959828 - MER4D LTR ERV1 -712 160 50 2419 233 133 102 chr13 105785070 105785223 -13959675 - MER66-int LTR ERV1 -2224 4452 4305 2546 114 3 22 chr13 105785223 105785380 -13959518 + THE1B LTR MaLR 4 162 -202 2182 105 0 3 chr13 105785380 105785666 -13959232 - AluSc SINE Alu -9 300 16 2546 114 3 22 chr13 105785666 105785876 -13959022 + THE1B LTR MaLR 162 364 0 2419 233 133 102 chr13 105785876 105787129 -13957769 - MER66-int LTR ERV1 -2371 4305 3002 2435 92 0 0 chr13 105787132 105787435 -13957463 + AluSq SINE Alu 1 303 -10 354 288 0 38 chr13 105787503 105787635 -13957263 - L1MC5 LINE L1 -742 7219 7093 1266 171 84 39 chr13 105787873 105788183 -13956715 - MER33 DNA MER1_type 0 324 1 2026 105 68 7 chr13 105788248 105788542 -13956356 - AluSx SINE Alu 0 312 1 308 307 89 37 chr13 105788740 105789089 -13955809 + L2 LINE L2 2379 2745 -569 193 186 85 0 chr13 105789178 105789237 -13955661 + L2 LINE L2 2898 2961 -311 661 223 114 31 chr13 105789244 105789437 -13955461 - MER20 DNA MER1_type -5 214 6 378 268 169 24 chr13 105789489 105789702 -13955196 + L2 LINE L2 3026 3269 -3 197 296 111 22 chr13 105789809 105789944 -13954954 - MIR SINE MIR -93 169 23 * 214 319 143 18 chr13 105789943 105790045 -13954853 + L3 LINE CR1 569 657 -920 1910 165 7 0 chr13 105790045 105790348 -13954550 + AluJb SINE Alu 1 305 -7 214 319 143 18 chr13 105790348 105790518 -13954380 + L3 LINE CR1 657 875 -702 2376 100 0 0 chr13 105791273 105791572 -13953326 + AluSx SINE Alu 1 299 -13 236 119 143 0 chr13 105793018 105793060 -13951838 + MLT1G1 LTR MaLR 515 562 -33 2332 100 0 0 chr13 105793078 105793378 -13951520 - AluSx SINE Alu -6 306 7 235 241 19 0 chr13 105793778 105793832 -13951066 + CT-rich Low_complexity Low_complexity 1 55 0 276 200 83 42 chr13 105793832 105793952 -13950946 - L1MC5 LINE L1 -167 7794 7670 2387 100 3 0 chr13 105794180 105794481 -13950417 + AluSx SINE Alu 1 302 -10 354 288 0 38 chr13 105794549 105794681 -13950217 - L1MC5 LINE L1 -742 7219 7093 1266 171 84 39 chr13 105794919 105795229 -13949669 - MER33 DNA MER1_type 0 324 1 2026 105 68 7 chr13 105795294 105795588 -13949310 - AluSx SINE Alu 0 312 1 308 307 89 37 chr13 105795786 105796135 -13948763 + L2 LINE L2 2379 2745 -569 193 186 85 0 chr13 105796224 105796283 -13948615 + L2 LINE L2 2898 2961 -311 661 223 114 31 chr13 105796290 105796483 -13948415 - MER20 DNA MER1_type -5 214 6 378 268 169 24 chr13 105796535 105796748 -13948150 + L2 LINE L2 3026 3269 -3 197 296 111 22 chr13 105796855 105796990 -13947908 - MIR SINE MIR -93 169 23 2106 142 7 0 chr13 105797091 105797401 -13947497 + AluJb SINE Alu 1 312 0 211 285 100 31 chr13 105797437 105797567 -13947331 + L3 LINE CR1 737 875 -702 2376 100 0 0 chr13 105798322 105798621 -13946277 + AluSx SINE Alu 1 299 -13 2331 108 0 0 chr13 105802235 105802532 -13942366 + AluSx SINE Alu 2 298 -14 591 243 93 37 chr13 105804082 105804296 -13940602 - MER113 DNA MER1_type? -86 435 210 228 163 0 0 chr13 105804682 105804725 -13940173 + (CA)n Simple_repeat Simple_repeat 2 44 0 309 179 0 0 chr13 105804798 105804854 -13940044 - MIR SINE MIR -109 153 98 2542 62 0 0 chr13 105806305 105806611 -13938287 + AluY SINE Alu 1 306 -5 247 328 40 32 chr13 105806617 105806742 -13938156 + MER5A DNA MER1_type 61 186 -3 360 0 0 0 chr13 105807656 105807696 -13937202 + (CA)n Simple_repeat Simple_repeat 2 41 0 1962 171 82 0 chr13 105807971 105808350 -13936548 - L1MA4 LINE L1 -6 6294 5885 381 135 0 27 chr13 105808750 105808824 -13936074 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 196 279 29 10 chr13 105808893 105808997 -13935901 + CT-rich Low_complexity Low_complexity 1 106 0 292 250 106 30 chr13 105809180 105809312 -13935586 + LTR16A1 LTR ERVL 316 457 0 2311 87 10 0 chr13 105809543 105809843 -13935055 - AluSp SINE Alu -10 303 1 183 80 0 0 chr13 105810202 105810227 -13934671 + (A)n Simple_repeat Simple_repeat 1 25 0 612 168 77 13 chr13 105810276 105810431 -13934467 - MIR SINE MIR -46 216 52 2169 112 0 16 chr13 105810832 105811144 -13933754 - AluSg SINE Alu -2 308 2 1886 136 0 53 chr13 105811155 105811457 -13933441 - AluSx SINE Alu -26 286 1 6021 214 10 17 chr13 105811457 105811917 -13932981 - L1PA16 LINE L1 -10 6156 5694 2279 101 0 0 chr13 105811917 105812205 -13932693 - AluSg1 SINE Alu -21 288 1 6021 214 10 17 chr13 105812205 105812832 -13932066 - L1PA16 LINE L1 -472 5694 5064 1723 166 3 42 chr13 105812832 105813140 -13931758 - AluJb SINE Alu -16 296 1 6021 214 10 17 chr13 105813140 105814149 -13930749 - L1PA16 LINE L1 -1102 5064 4045 6573 39 0 8 chr13 105814196 105814947 -13929951 - SVA Other Other -3 1383 639 423 0 0 0 chr13 105815033 105815080 -13929818 + (CA)n Simple_repeat Simple_repeat 2 48 0 306 214 137 34 chr13 105815849 105815966 -13928932 + LTR50 LTR ERVL 28 156 -639 397 225 67 17 chr13 105816200 105816320 -13928578 + LTR33A LTR ERVL 378 503 -20 243 0 0 0 chr13 105816533 105816560 -13928338 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2567 69 0 0 chr13 105817123 105817429 -13927469 - AluY SINE Alu -5 306 1 2202 144 30 25 chr13 105818086 105818448 -13926450 + THE1B LTR MaLR 1 364 0 567 28 0 0 chr13 105818485 105818556 -13926342 - L1PA3 LINE L1 -4 6151 6081 2062 139 0 0 chr13 105818948 105819235 -13925663 - AluSx SINE Alu -23 289 3 180 0 0 0 chr13 105819351 105819371 -13925527 + (T)n Simple_repeat Simple_repeat 1 20 0 2423 73 0 49 chr13 105819749 105820076 -13924822 + AluY SINE Alu 1 311 0 266 0 29 0 chr13 105820276 105820310 -13924588 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1079 183 0 0 chr13 105822154 105822329 -13922569 - FAM SINE Alu 0 175 1 1639 168 41 16 chr13 105822532 105822848 -13922050 + MLT1A1 LTR MaLR 12 335 -30 1456 194 82 51 chr13 105823022 105823475 -13921423 - MLT1C LTR MaLR 0 467 1 1464 171 65 2 chr13 105823848 105824273 -13920625 - L1MB3 LINE L1 -103 6080 5580 248 188 0 0 chr13 105824267 105824315 -13920583 + L1MB5 LINE L1 6127 6174 0 * 2147 120 3 7 chr13 105824573 105824872 -13920026 + AluSc SINE Alu 1 298 -11 1776 124 12 0 chr13 105824872 105825129 -13919769 - MER66A-int LTR ERV1 -4084 2592 2333 * 8844 174 89 28 chr13 105825115 105827024 -13917874 - MER66A-int LTR ERV1 -4508 2168 53 286 222 11 131 chr13 105827080 105827256 -13917642 - MER66A-int LTR ERV1 -6521 155 1 1334 154 144 77 chr13 105827256 105827666 -13917232 - MER66A LTR ERV1 0 478 98 1937 59 8 0 chr13 105828390 105828643 -13916255 + L1P LINE L1 1 255 -5891 2495 64 10 13 chr13 105828817 105829128 -13915770 + AluSg SINE Alu 1 310 0 368 291 115 11 chr13 105829128 105829310 -13915588 - MIR SINE MIR -6 256 56 1834 146 46 49 chr13 105829378 105829645 -13915253 - MER7A DNA MER2_type -2692 346 81 2221 112 7 0 chr13 105829645 105829941 -13914957 + AluSq SINE Alu 1 298 -15 1834 146 46 49 chr13 105829941 105830022 -13914876 - MER7A DNA MER2_type -2957 81 1 1091 221 82 3 chr13 105833114 105833408 -13911490 + MER33 DNA MER1_type 4 320 -4 1775 143 3 33 chr13 105833584 105833885 -13911013 - AluJb SINE Alu -20 292 1 266 213 0 0 chr13 105834410 105834457 -13910441 + L2 LINE L2 3267 3313 0 315 0 0 0 chr13 105834659 105834694 -13910204 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 225 0 0 0 chr13 105836393 105836418 -13908480 + (A)n Simple_repeat Simple_repeat 1 25 0 897 118 0 0 chr13 105836955 105837090 -13907808 + AluSp/q SINE Alu 177 311 -2 2109 113 3 0 chr13 105837095 105837395 -13907503 + AluSx SINE Alu 2 302 -10 278 248 33 91 chr13 105837736 105837857 -13907041 + L2 LINE L2 3198 3311 -2 23 33 0 0 chr13 105839472 105839502 -13905396 + AT_rich Low_complexity Low_complexity 1 30 0 2352 82 0 3 chr13 105839913 105840219 -13904679 - AluSx SINE Alu -7 305 1 1983 136 0 3 chr13 105841437 105841738 -13903160 - AluJb SINE Alu -12 300 1 1059 152 0 0 chr13 105844157 105844328 -13900570 - FRAM SINE Alu -7 169 1 338 290 37 0 chr13 105844714 105844821 -13900077 - MER81 DNA DNA -3 111 1 2127 135 0 0 chr13 105844944 105845256 -13899642 + AluSx SINE Alu 1 312 0 2000 122 7 0 chr13 105845552 105845848 -13899050 - AluSx SINE Alu -14 298 1 242 216 0 0 chr13 105846160 105846211 -13898687 + (TG)n Simple_repeat Simple_repeat 2 52 0 197 380 74 0 chr13 105847410 105847518 -13897380 + MIR3 SINE MIR 43 158 -50 345 179 45 0 chr13 105849060 105849127 -13895771 - U6 snRNA snRNA 0 107 38 424 267 67 7 chr13 105850419 105850569 -13894329 - LTR67 LTR ERVL -2 555 397 234 219 356 12 chr13 105850616 105850776 -13894122 - LTR67 LTR ERVL -342 215 1 1487 181 18 7 chr13 105851767 105852043 -13892855 + AluJo SINE Alu 2 280 -32 1911 127 20 3 chr13 105852207 105852506 -13892392 + AluSx SINE Alu 1 304 -8 211 277 96 53 chr13 105853976 105854070 -13890828 + MER5A DNA MER1_type 8 105 -84 542 268 147 5 chr13 105854892 105855082 -13889816 + MIR SINE MIR 46 262 0 183 242 61 30 chr13 105855498 105855564 -13889334 + L2 LINE L2 3197 3264 -8 1701 150 0 17 chr13 105855721 105856021 -13888877 + AluJo SINE Alu 1 295 -17 669 210 8 0 chr13 105856231 105856350 -13888548 - FLAM_A SINE Alu -12 121 2 425 331 133 0 chr13 105856982 105857163 -13887735 + MIR SINE MIR 2 206 -56 263 214 155 12 chr13 105857283 105857367 -13887531 - MER91A DNA MER1_type -1 195 100 1673 176 3 3 chr13 105857557 105857846 -13887052 - AluJo SINE Alu -23 289 1 27 49 0 0 chr13 105859218 105859259 -13885639 + GC_rich Low_complexity Low_complexity 1 41 0 25 110 0 0 chr13 105859369 105859478 -13885420 + GC_rich Low_complexity Low_complexity 1 109 0 24 100 0 0 chr13 105859759 105859839 -13885059 + GC_rich Low_complexity Low_complexity 1 80 0 208 305 29 9 chr13 105859939 105860044 -13884854 + G-rich Low_complexity Low_complexity 5 111 0 547 329 259 9 chr13 105860619 105861315 -13883583 + L2 LINE L2 1706 2575 -739 1066 147 18 55 chr13 105861316 105861534 -13883364 - MER63D DNA MER1_type -257 803 594 647 237 60 12 chr13 105861557 105861859 -13883039 - MER63D DNA MER1_type -626 435 58 1408 91 9 32 chr13 105861893 105862114 -13882784 - L1PA6 LINE L1 -5 6149 5934 261 59 29 0 chr13 105862224 105862258 -13882640 - Alu SINE Alu -253 50 16 * 1643 102 0 5 chr13 105862252 105862468 -13882430 + THE1B LTR MaLR 150 364 0 2365 233 82 44 chr13 105862484 105863305 -13881593 - MER66A-int LTR ERV1 -2368 4308 2974 2065 188 94 10 chr13 105863307 105863721 -13881177 - MER66A-int LTR ERV1 -3226 3450 3002 2160 119 0 0 chr13 105863724 105864034 -13880864 + AluSq SINE Alu 1 310 -3 2552 161 13 39 chr13 105864043 105864244 -13880654 - MER66A-int LTR ERV1 -3897 2779 2574 2215 91 3 3 chr13 105864244 105864542 -13880356 + AluSc SINE Alu 1 298 -11 2552 161 13 39 chr13 105864542 105864799 -13880099 - MER66A-int LTR ERV1 -4102 2574 2333 * 8892 174 90 29 chr13 105864785 105866694 -13878204 - MER66A-int LTR ERV1 -4508 2168 53 290 222 11 131 chr13 105866750 105866926 -13877972 - MER66A-int LTR ERV1 -6521 155 1 1359 151 144 77 chr13 105866926 105867336 -13877562 - MER66A LTR ERV1 0 478 98 37524 37 29 1 chr13 105868060 105872590 -13872308 + L1P LINE L1 1 4653 -1493 651 188 23 0 chr13 105872690 105872823 -13872075 + MER65A LTR ERV1 310 445 0 2263 201 122 12 chr13 105872841 105873414 -13871484 + MER92B LTR ERV1 1 636 0 286 250 16 0 chr13 105874995 105875059 -13869839 - MIR SINE MIR -1 261 197 1722 187 0 3 chr13 105875081 105875391 -13869507 + AluJb SINE Alu 1 309 -3 462 101 0 0 chr13 105875391 105875460 -13869438 + (GA)n Simple_repeat Simple_repeat 1 69 0 340 231 154 10 chr13 105875461 105875565 -13869333 - MIR SINE MIR -97 165 47 1535 238 46 28 chr13 105875956 105876415 -13868483 + MLT1C LTR MaLR 1 467 0 2325 199 81 23 chr13 105877239 105877679 -13867219 - MER74B LTR ERVL -22 600 124 3703 98 10 73 chr13 105877679 105877804 -13867094 - MER41A LTR ERV1 0 554 423 1743 106 53 0 chr13 105877804 105878069 -13866829 + AluSg SINE Alu 1 279 -31 3703 98 10 73 chr13 105878069 105878534 -13866364 - MER41A LTR ERV1 -131 423 1 2325 199 81 23 chr13 105878534 105878615 -13866283 - MER74B LTR ERVL -498 124 49 1641 183 13 3 chr13 105879166 105879466 -13865432 - AluJb SINE Alu -9 303 1 1987 140 0 3 chr13 105879476 105879784 -13865114 - AluSx SINE Alu -5 307 1 296 346 0 24 chr13 105880021 105880148 -13864750 + MER67B LTR ERV1 38 161 -500 423 270 103 11 chr13 105880277 105880451 -13864447 + MER67A LTR ERV1 354 543 0 2439 118 39 0 chr13 105880622 105880985 -13863913 + LTR49 LTR ERV1 2 378 -217 2667 132 12 14 chr13 105881054 105881478 -13863420 + MER57B LTR ERV1 10 432 -2 1185 145 29 19 chr13 105881479 105881686 -13863212 + LTR49 LTR ERV1 387 595 0 260 174 0 18 chr13 105882186 105882241 -13862657 + MER31-int LTR ERV1 3672 5026 -1214 935 128 0 0 chr13 105882243 105882376 -13862522 + FLAM_C SINE Alu 1 133 0 30 59 0 0 chr13 105882376 105882427 -13862471 + AT_rich Low_complexity Low_complexity 1 51 0 3500 120 41 32 chr13 105882528 105882695 -13862203 + MER61E LTR ERV1 1 165 -404 2183 107 0 0 chr13 105882695 105882994 -13861904 + AluSx SINE Alu 1 299 -13 3500 120 41 32 chr13 105882994 105883386 -13861512 + MER61E LTR ERV1 165 565 -4 267 213 28 120 chr13 105883392 105883500 -13861398 + MER31-int LTR ERV1 3818 3915 -1021 1445 191 64 104 chr13 105884421 105884791 -13860107 - MER31B LTR ERV1 -3 463 115 1560 178 15 4 chr13 105884791 105885061 -13859837 - AluJb SINE Alu -39 273 1 1445 191 64 104 chr13 105885061 105885172 -13859726 - MER31B LTR ERV1 -351 115 1 2373 119 73 14 chr13 105885896 105886240 -13858658 - THE1B LTR MaLR 0 364 1 725 180 69 120 chr13 105886462 105886800 -13858098 - MER92B LTR ERV1 0 636 12 259 197 45 15 chr13 105886844 105886910 -13857988 - MIR SINE MIR -92 170 103 2268 167 20 92 chr13 105886910 105887059 -13857839 + LTR24 LTR ERV1 1 159 -308 3557 121 26 30 chr13 105887059 105887588 -13857310 - MER1A DNA MER1_type 0 527 1 2268 167 20 92 chr13 105887588 105887941 -13856957 + LTR24 LTR ERV1 159 467 0 4427 25 2 0 chr13 105888298 105888901 -13855997 - L1PA3 LINE L1 -389 5766 5163 3668 34 0 2 chr13 105888901 105889338 -13855560 + L1PA3 LINE L1 5743 6181 0 2319 118 30 18 chr13 105889571 105889909 -13854989 - THE1B LTR MaLR 0 364 23 232 250 0 0 chr13 105890009 105890065 -13854833 + T-rich Low_complexity Low_complexity 1 56 0 2174 115 22 0 chr13 105890082 105890403 -13854495 + THE1A LTR MaLR 28 355 0 2083 116 3 23 chr13 105890929 105891231 -13853667 - AluSx SINE Alu -16 296 1 355 362 16 8 chr13 105891252 105891379 -13853519 + L2 LINE L2 3144 3271 -1 267 272 152 16 chr13 105893084 105893209 -13851689 + L3 LINE CR1 1373 1514 -63 2167 141 30 50 chr13 105893803 105894162 -13850736 - MLT1B LTR MaLR -2 388 36 1394 182 73 92 chr13 105894162 105894628 -13850270 - MSTB2 LTR MaLR 0 457 1 2167 141 30 50 chr13 105894628 105894664 -13850234 - MLT1B LTR MaLR -354 36 1 218 182 0 0 chr13 105895275 105895319 -13849579 + (TTG)n Simple_repeat Simple_repeat 2 45 0 180 111 0 0 chr13 105895745 105895772 -13849126 + (TA)n Simple_repeat Simple_repeat 2 28 0 918 142 0 16 chr13 105896343 105896470 -13848428 - FLAM_C SINE Alu -8 125 1 816 231 102 50 chr13 105896565 105896929 -13847969 + L1MC4 LINE L1 7434 7816 -226 2532 177 63 39 chr13 105896929 105897153 -13847745 + L1MB7 LINE L1 4995 5212 -972 1227 194 164 4 chr13 105897153 105897416 -13847482 + AluSx SINE Alu 1 305 -7 2532 177 63 39 chr13 105897416 105897636 -13847262 + L1MB7 LINE L1 5212 5425 -759 1790 171 0 7 chr13 105897636 105897929 -13846969 + AluJb SINE Alu 1 291 -21 2532 177 63 39 chr13 105897929 105898331 -13846567 + L1MB7 LINE L1 5425 5866 -318 1229 122 5 43 chr13 105898354 105898542 -13846356 + AluSx SINE Alu 3 183 -129 387 204 0 34 chr13 105899233 105899321 -13845577 + MER58B DNA MER1_type 257 341 0 1349 235 36 14 chr13 105899728 105900282 -13844616 - LTR68 LTR ERV1 -127 613 2 1869 123 11 4 chr13 105900283 105900551 -13844347 + AluSx SINE Alu 43 312 0 355 233 139 31 chr13 105901404 105901533 -13843365 - MIR SINE MIR -2 260 118 379 312 68 20 chr13 105901835 105902085 -13842813 + L1M4 LINE L1 4905 5166 -980 229 293 24 0 chr13 105902155 105902237 -13842661 + L1M LINE L1 5328 5411 -759 14140 26 5 1 chr13 105902247 105904511 -13840387 + L1PA2 LINE L1 3739 6010 -145 987 17 0 9 chr13 105904627 105904783 -13840115 + L1PA2 LINE L1 6039 6155 0 569 294 147 12 chr13 105905155 105905585 -13839313 - L1ME4a LINE L1 -209 5912 5425 21 0 0 0 chr13 105905735 105905756 -13839142 + AT_rich Low_complexity Low_complexity 1 21 0 503 282 174 22 chr13 105906027 105906343 -13838555 + MLT1H1 LTR MaLR 10 373 -182 210 141 31 31 chr13 105906907 105906971 -13837927 + CT-rich Low_complexity Low_complexity 6 69 0 254 246 0 29 chr13 105907119 105907188 -13837710 - L2 LINE L2 0 3272 3206 1855 198 53 10 chr13 105907374 105907788 -13837110 - MLT1C LTR MaLR -2 465 34 2265 127 130 5 chr13 105908802 105909180 -13835718 + MSTA LTR MaLR 1 425 -3 2130 127 75 67 chr13 105909189 105909576 -13835322 - MLT1B LTR MaLR 0 390 1 376 266 47 59 chr13 105909712 105909881 -13835017 + MER5A DNA MER1_type 8 174 -15 2318 119 64 3 chr13 105910240 105910584 -13834314 - MER47A DNA MER2_type -1 365 1 206 178 0 44 chr13 105910596 105910618 -13834280 + (TA)n Simple_repeat Simple_repeat 1 22 -64 6761 136 69 29 chr13 105910618 105911799 -13833099 - Tigger3b DNA MER2_type -3 1228 1 206 178 0 44 chr13 105911799 105911866 -13833032 + (TA)n Simple_repeat Simple_repeat 22 86 0 961 164 0 0 chr13 105911870 105912016 -13832882 - AluJb SINE Alu -30 282 137 189 213 0 0 chr13 105912310 105912357 -13832541 + CT-rich Low_complexity Low_complexity 1 47 0 2437 74 0 3 chr13 105912533 105912830 -13832068 + AluSg SINE Alu 1 296 -14 182 290 0 16 chr13 105912837 105912899 -13831999 - L2 LINE L2 -6 3266 3206 2020 130 0 0 chr13 105913281 105913595 -13831303 - AluSx SINE Alu 0 314 1 2503 62 0 7 chr13 105913603 105913907 -13830991 - AluY SINE Alu -9 302 1 2682 181 28 37 chr13 105913945 105914514 -13830384 - L1MB4 LINE L1 0 6180 5617 335 232 210 22 chr13 105914553 105914691 -13830207 + MIR3 SINE MIR 34 197 -11 1129 264 67 13 chr13 105915521 105915836 -13829062 + MLT1J1 LTR MaLR 27 358 -88 371 293 162 31 chr13 105915910 105916139 -13828759 - MLT1J LTR MaLR -142 369 111 189 171 0 0 chr13 105916785 105916820 -13828078 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 224 60 0 chr13 105917386 105917453 -13827445 + LTR16A1 LTR ERVL 387 457 0 271 345 5 77 chr13 105918782 105918976 -13825922 - L2 LINE L2 -17 3255 3076 2160 215 106 13 chr13 105919085 105919252 -13825646 + L1MB7 LINE L1 5587 5737 -447 4456 80 7 0 chr13 105919252 105919802 -13825096 - MER41A LTR ERV1 0 554 1 2160 215 106 13 chr13 105919802 105920164 -13824734 + L1MB7 LINE L1 5737 6165 -19 1842 132 123 26 chr13 105920528 105920701 -13824197 + THE1C LTR MaLR 1 156 -219 537 58 0 0 chr13 105920701 105920770 -13824128 + (TC)n Simple_repeat Simple_repeat 1 69 0 1842 132 123 26 chr13 105920770 105920938 -13823960 + THE1C LTR MaLR 156 375 0 2992 186 14 14 chr13 105921230 105921789 -13823109 + MER89 LTR ERV1 1 559 0 21 0 0 0 chr13 105922821 105922842 -13822056 + AT_rich Low_complexity Low_complexity 1 21 0 2417 202 84 35 chr13 105923978 105924571 -13820327 + MLT1E2 LTR MaLR 5 626 0 2474 156 69 0 chr13 105924850 105925254 -13819644 + MSTB1 LTR MaLR 1 432 0 322 163 62 150 chr13 105927082 105927178 -13817720 - Charlie2 DNA MER1_type -6 2856 2778 2058 152 0 3 chr13 105927178 105927487 -13817411 + AluSx SINE Alu 1 308 -4 322 163 62 150 chr13 105927487 105927550 -13817348 - Charlie2 DNA MER1_type -84 2778 2711 2286 114 53 39 chr13 105927795 105928153 -13816745 + THE1B LTR MaLR 1 363 -1 442 270 66 46 chr13 105928171 105928412 -13816486 - L1MB4 LINE L1 -2250 5558 5313 1173 163 78 78 chr13 105928522 105928716 -13816182 - L1ME3A LINE L1 -11 6159 5966 1826 185 0 0 chr13 105928716 105929008 -13815890 - AluSx SINE Alu -20 292 1 1173 163 78 78 chr13 105929008 105929060 -13815838 - L1ME3A LINE L1 -204 5966 5915 2541 171 37 70 chr13 105929060 105929546 -13815352 - MER70A LTR ERVL 0 472 3 1173 163 78 78 chr13 105929546 105929604 -13815294 - L1ME3A LINE L1 -254 5916 5854 1271 209 47 57 chr13 105929610 105930089 -13814809 - Charlie2 DNA MER1_type -149 2713 2240 1793 227 40 36 chr13 105930089 105930583 -13814315 + MLT1D LTR MaLR 1 496 -9 251 233 33 0 chr13 105930599 105930659 -13814239 - Charlie2 DNA MER1_type -669 2193 2132 * 1196 236 106 88 chr13 105930639 105930841 -13814057 - Charlie2a DNA MER1_type -1848 1014 817 1390 205 17 20 chr13 105930841 105931134 -13813764 - AluJo SINE Alu -20 292 1 1196 236 106 88 chr13 105931134 105931609 -13813289 - Charlie2a DNA MER1_type -2045 817 325 437 252 80 13 chr13 105931635 105931786 -13813112 - LTR16A1 LTR ERVL -296 161 1 944 220 140 84 chr13 105931878 105932391 -13812507 - MER34 LTR ERV1 0 542 1 360 333 31 15 chr13 105932407 105932602 -13812296 + L2 LINE L2 2478 2675 -639 221 312 191 25 chr13 105932584 105932741 -13812157 + L2 LINE L2 3103 3285 -28 * 2457 107 68 3 chr13 105932764 105933102 -13811796 + THE1B LTR MaLR 5 364 0 496 248 17 120 chr13 105933593 105933690 -13811208 - HAL1 LINE L1 -806 1701 1596 4777 105 32 1 chr13 105933690 105934346 -13810552 - L1PA16 LINE L1 -9 6157 5482 496 248 17 120 chr13 105934346 105934363 -13810535 - HAL1 LINE L1 -911 1596 1579 805 221 108 20 chr13 105934363 105934567 -13810331 - MER58A DNA MER1_type 0 224 3 496 248 17 120 chr13 105934567 105934698 -13810200 - HAL1 LINE L1 -928 1579 1497 2061 127 38 0 chr13 105934698 105934989 -13809909 - AluSq SINE Alu -11 302 1 496 248 17 120 chr13 105934989 105935074 -13809824 - HAL1 LINE L1 -1010 1497 1405 1122 234 62 7 chr13 105935085 105935392 -13809506 - MER110 LTR ERV1 -2 489 166 333 160 30 120 chr13 105935465 105935565 -13809333 - MER110A LTR ERV1 -298 170 80 239 297 73 31 chr13 105935656 105935848 -13809050 - HAL1 LINE L1 -1138 1369 1170 * 263 275 81 7 chr13 105935824 105935973 -13808925 - L1MEd LINE L1 -5058 1061 902 850 150 0 0 chr13 105935973 105936100 -13808798 - FLAM_C SINE Alu -4 129 3 306 50 0 0 chr13 105936169 105936209 -13808689 + (CA)n Simple_repeat Simple_repeat 2 41 0 2008 138 0 10 chr13 105936834 105937130 -13807768 + AluSg SINE Alu 1 293 -17 1134 228 60 27 chr13 105937880 105938213 -13806685 - MLT1G1 LTR MaLR -251 344 1 227 156 16 31 chr13 105938657 105938721 -13806177 + L1ME4a LINE L1 5992 6054 -67 1979 164 0 3 chr13 105938766 105939077 -13805821 - AluJb SINE Alu -2 310 1 802 288 108 8 chr13 105939256 105939634 -13805264 + LTR33 LTR ERVL 102 517 -4 238 281 42 21 chr13 105939638 105939734 -13805164 + MIR3 SINE MIR 71 168 -40 1951 73 23 0 chr13 105939771 105940252 -13804646 + L1PA5 LINE L1 5585 6154 0 3696 149 30 0 chr13 105940261 105940890 -13804008 + L1MB2 LINE L1 5524 6171 0 727 158 9 0 chr13 105941005 105941119 -13803779 - AluSx SINE Alu -12 298 184 1036 86 0 43 chr13 105941119 105941259 -13803639 - AluSx SINE Alu -179 134 1 241 228 18 0 chr13 105942470 105942527 -13802371 - L2 LINE L2 -5 3308 3251 3443 208 97 9 chr13 105942663 105943515 -13801383 - MER63C DNA MER1_type -3 927 1 376 212 76 0 chr13 105944977 105945095 -13799803 + MIR SINE MIR 66 192 -70 2128 120 7 3 chr13 105945155 105945446 -13799452 + AluSc SINE Alu 6 297 -12 1785 173 3 7 chr13 105945788 105946072 -13798826 + AluJb SINE Alu 6 288 -24 4160 154 35 49 chr13 105946089 105946109 -13798789 + L1MB4 LINE L1 5328 5347 -833 2101 125 68 52 chr13 105946109 105946493 -13798405 + MLT1B LTR MaLR 1 390 0 4160 154 35 49 chr13 105946493 105946866 -13798032 + L1MB4 LINE L1 5347 5724 -456 2688 98 17 0 chr13 105946866 105947224 -13797674 + THE1B LTR MaLR 1 364 0 4160 154 35 49 chr13 105947224 105947688 -13797210 + L1MB4 LINE L1 5724 6174 -6 335 121 152 0 chr13 105947712 105947778 -13797120 + L1MB8 LINE L1 6103 6178 0 213 275 14 14 chr13 105949519 105949588 -13795310 - L2 LINE L2 -1 3271 3203 2182 90 0 10 chr13 105949601 105949890 -13795008 + AluY SINE Alu 21 306 -5 234 319 9 35 chr13 105949996 105950112 -13794786 - L2 LINE L2 0 3272 3160 355 212 68 25 chr13 105950910 105951028 -13793870 - MIR3 SINE MIR -18 190 68 195 155 0 86 chr13 105951219 105951277 -13793621 + MER5B DNA MER1_type 22 74 -104 303 181 145 12 chr13 105951277 105951360 -13793538 + MLT1A2 LTR MaLR 3 96 -278 242 270 0 0 chr13 105951709 105951772 -13793126 + (CA)n Simple_repeat Simple_repeat 1 63 0 1619 207 35 40 chr13 105953262 105953329 -13791569 + MLT1A2 LTR MaLR 1 67 -307 2000 155 0 3 chr13 105953329 105953625 -13791273 - AluJb SINE Alu -13 299 5 1619 207 35 40 chr13 105953625 105953933 -13790965 + MLT1A2 LTR MaLR 67 374 0 2185 131 0 0 chr13 105955203 105955515 -13789383 + AluSx SINE Alu 1 312 0 244 83 42 0 chr13 105956118 105956166 -13788732 + (TA)n Simple_repeat Simple_repeat 1 50 0 194 105 74 32 chr13 105956240 105956335 -13788563 + (TA)n Simple_repeat Simple_repeat 2 100 0 2153 131 7 0 chr13 105956567 105956865 -13788033 + AluSx SINE Alu 1 300 -12 1884 111 67 4 chr13 105958419 105958689 -13786209 + AluSx SINE Alu 1 287 -25 854 214 151 0 chr13 105959077 105959283 -13785615 + MIR SINE MIR 13 249 -13 246 280 136 25 chr13 105959733 105959969 -13784929 - L1M4 LINE L1 -3355 2791 2530 1432 163 103 34 chr13 105960462 105960812 -13784086 - MLT1A2 LTR MaLR 0 374 1 180 0 0 0 chr13 105960990 105961010 -13783888 + (TC)n Simple_repeat Simple_repeat 1 20 0 184 89 22 22 chr13 105961522 105961567 -13783331 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 21 57 0 0 chr13 105961581 105961616 -13783282 + AT_rich Low_complexity Low_complexity 1 35 0 768 218 41 15 chr13 105961649 105961846 -13783052 - MIR SINE MIR -33 229 28 673 205 0 0 chr13 105961985 105962107 -13782791 + FLAM_C SINE Alu 2 123 -20 1710 130 0 12 chr13 105962117 105962364 -13782534 + AluSx SINE Alu 1 244 -68 6935 39 17 22 chr13 105962458 105963321 -13781577 - SVA Other Other -1 1385 527 2305 114 0 3 chr13 105963582 105963889 -13781009 - AluSg SINE Alu -4 306 1 1472 168 160 6 chr13 105964455 105964834 -13780064 + MER66A LTR ERV1 2 473 -5 2177 122 0 0 chr13 105965092 105965386 -13779512 - AluSx SINE Alu -18 294 1 4386 114 22 2 chr13 105967203 105967825 -13777073 - MER41B LTR ERV1 0 635 1 1744 142 3 58 chr13 105967866 105968176 -13776722 + AluJo SINE Alu 1 293 -19 284 159 0 16 chr13 105968176 105968239 -13776659 + GA-rich Low_complexity Low_complexity 1 62 0 2103 125 20 0 chr13 105969041 105969336 -13775562 + AluSq SINE Alu 1 301 -12 282 250 43 26 chr13 105970014 105970130 -13774768 - MIR SINE MIR -12 250 133 2287 105 3 10 chr13 105970275 105970581 -13774317 + AluSx SINE Alu 1 304 -8 499 299 96 25 chr13 105970682 105971036 -13773862 + L2 LINE L2 2248 2626 -688 1675 106 47 0 chr13 105971654 105971909 -13772989 + L1MA4 LINE L1 6023 6289 -11 21 0 0 0 chr13 105971937 105971958 -13772940 + AT_rich Low_complexity Low_complexity 1 21 0 293 324 105 34 chr13 105972074 105972426 -13772472 + L2 LINE L2 2709 3083 -189 22 0 0 0 chr13 105972448 105972470 -13772428 + AT_rich Low_complexity Low_complexity 1 22 0 846 203 83 0 chr13 105972631 105972823 -13772075 + MER3 DNA MER1_type 2 209 0 2537 87 0 0 chr13 105972849 105973159 -13771739 - AluSx SINE Alu -2 310 1 1572 217 58 13 chr13 105973163 105973541 -13771357 + LTR40b LTR ERVL 68 462 0 2306 92 0 0 chr13 105974143 105974437 -13770461 - AluY SINE Alu -17 294 1 407 231 308 0 chr13 105974592 105974722 -13770176 + MLT1C LTR MaLR 1 170 -425 270 250 12 50 chr13 105974735 105974815 -13770083 - MER96B DNA MER1_type? -3 414 338 1687 140 191 56 chr13 105974821 105975177 -13769721 - MER4A LTR ERV1 0 664 261 494 133 89 0 chr13 105975177 105975267 -13769631 - MER4A LTR ERV1 -566 98 1 711 184 131 24 chr13 105975279 105975485 -13769413 + MLT1C LTR MaLR 237 464 -3 237 167 0 0 chr13 105975733 105975775 -13769123 + MIR SINE MIR 215 256 -6 2155 117 7 0 chr13 105975974 105976274 -13768624 - AluSx SINE Alu -10 302 1 2216 96 7 10 chr13 105976432 105976734 -13768164 - AluY SINE Alu -10 301 1 316 256 0 0 chr13 105976752 105976834 -13768064 - L1ME3A LINE L1 -5 6165 6084 2922 170 32 29 chr13 105976843 105977322 -13767576 - MER21A LTR ERV1 0 931 448 4916 94 28 12 chr13 105977322 105978002 -13766896 + LTR8 LTR ERV1 1 691 0 2922 170 32 29 chr13 105978002 105978075 -13766823 - MER21A LTR ERV1 -483 448 377 1333 139 62 43 chr13 105978081 105978339 -13766559 - MER21A LTR ERV1 -667 264 2 1092 224 109 53 chr13 105978342 105978811 -13766087 - L1ME3A LINE L1 -105 6065 5571 7322 45 6 24 chr13 105978825 105980443 -13764455 - L1PA5 LINE L1 -8 6146 4543 2057 153 55 11 chr13 105980585 105980839 -13764059 - MER65A LTR ERV1 -64 381 105 747 138 28 35 chr13 105980839 105980984 -13763914 - L1PA16 LINE L1 -1 6165 6022 2057 153 55 11 chr13 105980984 105981094 -13763804 - MER65A LTR ERV1 -340 105 1 380 212 47 12 chr13 105983895 105983980 -13760918 - MLT1I LTR MaLR -37 372 285 2841 170 12 25 chr13 105984064 105984582 -13760316 - MER41E LTR ERV1 -1 511 1 995 220 99 0 chr13 105985117 105985390 -13759508 - MLT1D LTR MaLR 0 505 206 843 143 14 7 chr13 105985443 105985583 -13759315 - FRAM SINE Alu -10 166 26 2041 146 10 0 chr13 105985592 105985901 -13758997 - AluSx SINE Alu 0 312 1 707 229 26 26 chr13 105985901 105986093 -13758805 - MLT1D LTR MaLR -311 194 3 219 377 7 14 chr13 105986106 105986244 -13758654 - MIR SINE MIR -16 246 110 185 252 159 37 chr13 105986285 105986392 -13758506 + MIR SINE MIR 10 129 -133 224 288 17 17 chr13 105986543 105986602 -13758296 + MIR SINE MIR 10 68 -194 379 198 111 28 chr13 105988110 105988242 -13756656 - AluJo SINE Alu -113 189 117 386 121 15 0 chr13 105988242 105988308 -13756590 + (TA)n Simple_repeat Simple_repeat 1 67 0 304 194 15 0 chr13 105988309 105988376 -13756522 - L1MC4 LINE L1 -1339 6703 6636 324 0 0 0 chr13 105988380 105988416 -13756482 + (GA)n Simple_repeat Simple_repeat 2 37 0 733 182 0 0 chr13 105988416 105988526 -13756372 - AluJo SINE Alu -194 118 9 1089 215 73 104 chr13 105988734 105989292 -13755606 - MER34 LTR ERV1 -1 541 1 725 175 0 0 chr13 105989404 105989524 -13755374 - MER5B DNA MER1_type -53 125 6 667 226 92 36 chr13 105990199 105990505 -13754393 + L1MEd LINE L1 895 1217 -4902 583 286 89 26 chr13 105990515 105990906 -13753992 + L1MEd LINE L1 1262 1677 -4452 1789 264 49 34 chr13 105991396 105992127 -13752771 + L1MEd LINE L1 2166 2907 -3222 1898 134 3 0 chr13 105993531 105993815 -13751083 + AluSx SINE Alu 28 312 0 195 254 0 68 chr13 105995148 105995207 -13749691 - L2 LINE L2 -4 3268 3214 240 420 6 17 chr13 105995471 105995645 -13749253 - L2 LINE L2 -457 2857 2686 504 338 18 36 chr13 105995646 105995977 -13748921 + L1ME LINE L1 5446 5770 -351 558 316 25 0 chr13 105997619 105997777 -13747121 - MIR3 SINE MIR -11 197 36 21 0 0 0 chr13 105997868 105997889 -13747009 + AT_rich Low_complexity Low_complexity 1 21 0 348 332 15 36 chr13 105997999 105998149 -13746749 - MIR SINE MIR -62 146 19 1294 191 11 34 chr13 105998198 105998465 -13746433 + AluJo SINE Alu 6 266 -46 21 0 0 0 chr13 105998473 105998494 -13746404 + AT_rich Low_complexity Low_complexity 1 21 0 385 353 0 0 chr13 105999538 105999640 -13745258 - L2 LINE L2 -1 3312 3211 3655 194 25 5 chr13 105999662 106000301 -13744597 + MER82 DNA MER2_type 1 652 -1 1787 157 54 0 chr13 106000480 106000774 -13744124 - AluJb SINE Alu -2 310 1 2383 96 0 3 chr13 106001566 106001869 -13743029 - AluSx SINE Alu -9 303 2 1744 68 4 46 chr13 106002018 106002255 -13742643 - AluY SINE Alu -2 309 83 2671 111 11 3 chr13 106003012 106003373 -13741525 - THE1B LTR MaLR 0 364 1 211 397 44 7 chr13 106003484 106003620 -13741278 - MIR3 SINE MIR -14 194 54 1856 136 93 6 chr13 106004050 106004373 -13740525 + MLT1C LTR MaLR 116 466 -1 251 298 11 11 chr13 106004405 106004499 -13740399 + ERVL LTR ERVL 4089 4182 -1582 460 244 118 0 chr13 106004693 106004812 -13740086 + MIR SINE MIR 31 163 -99 337 213 17 0 chr13 106004812 106004890 -13740008 - MLT1D LTR MaLR 0 505 441 275 233 81 23 chr13 106005329 106005415 -13739483 + MIR SINE MIR 41 131 -77 714 161 47 67 chr13 106005649 106005771 -13739127 + MER53 DNA DNA 1 119 -70 1727 170 32 0 chr13 106005771 106006048 -13738850 - AluJo SINE Alu -26 286 1 714 161 47 67 chr13 106006048 106006118 -13738780 + MER53 DNA DNA 119 189 0 568 162 0 18 chr13 106006505 106006616 -13738282 + MER53 DNA DNA 58 166 -23 1268 194 102 63 chr13 106006713 106006822 -13738076 + MLT1D LTR MaLR 1 104 -401 1794 153 17 24 chr13 106006822 106007117 -13737781 + AluJo SINE Alu 1 293 -19 1268 194 102 63 chr13 106007117 106007486 -13737412 + MLT1D LTR MaLR 104 498 -7 480 313 23 23 chr13 106007664 106007840 -13737058 - MIR3 SINE MIR -12 196 21 424 303 70 50 chr13 106008122 106008363 -13736535 + MIR SINE MIR 3 248 -14 203 292 124 29 chr13 106008486 106008623 -13736275 + L2 LINE L2 3130 3279 -34 183 182 0 0 chr13 106008731 106008764 -13736134 - MIR SINE MIR -111 151 119 270 265 133 26 chr13 106010051 106010202 -13734696 + L3b LINE CR1 1106 1272 -311 445 281 68 70 chr13 106010216 106010691 -13734207 + L1ME4a LINE L1 5315 5791 -330 370 165 154 0 chr13 106010692 106010783 -13734115 - MER58 DNA MER1_type 0 2420 2316 495 204 11 0 chr13 106010796 106010884 -13734014 - MER58 DNA MER1_type -246 95 7 383 263 164 18 chr13 106010907 106011181 -13733717 + L1ME4a LINE L1 5790 6103 -18 1812 159 13 10 chr13 106011438 106011740 -13733158 + AluJb SINE Alu 5 307 -5 351 229 48 0 chr13 106012537 106012620 -13732278 - MIR SINE MIR -109 153 67 2045 145 0 0 chr13 106012837 106013134 -13731764 - AluSx SINE Alu -15 297 1 305 324 46 0 chr13 106013611 106013719 -13731179 - L2 LINE L2 0 3272 3160 255 192 77 0 chr13 106013824 106013876 -13731022 - MLT1H LTR MaLR -16 579 524 2212 163 28 21 chr13 106013905 106014292 -13730606 - MLT1B LTR MaLR 0 390 1 792 273 43 58 chr13 106014294 106014620 -13730278 - MLT1H LTR MaLR -200 349 29 2030 169 114 20 chr13 106016471 106016926 -13727972 - MLT1D LTR MaLR -7 498 1 800 154 0 29 chr13 106017297 106017433 -13727465 - FLAM_A SINE Alu 0 142 11 1721 164 136 6 chr13 106017492 106017815 -13727083 + MLT1A1 LTR MaLR 1 365 0 2180 114 0 0 chr13 106018151 106018485 -13726413 + AluSx SINE Alu 5 338 0 925 167 105 6 chr13 106018592 106018754 -13726144 + MER45A DNA AcHobo 1 178 0 263 291 93 33 chr13 106018958 106019109 -13725789 - MIR SINE MIR -80 182 23 33 56 0 0 chr13 106019402 106019456 -13725442 + AT_rich Low_complexity Low_complexity 1 54 0 244 241 233 23 chr13 106019470 106019603 -13725295 + L1ME4a LINE L1 5959 6119 -2 426 243 112 0 chr13 106019625 106019732 -13725166 - L2 LINE L2 -4 3309 3191 221 296 167 0 chr13 106019766 106019874 -13725024 - L3 LINE CR1 -610 967 842 780 344 113 33 chr13 106019918 106020433 -13724465 - L3 LINE CR1 -824 753 198 191 146 24 0 chr13 106022187 106022228 -13722670 + (TG)n Simple_repeat Simple_repeat 1 42 0 2062 127 0 0 chr13 106023774 106024050 -13720848 - AluSx SINE Alu -36 276 1 1854 196 57 29 chr13 106025493 106025947 -13718951 + MLT1C LTR MaLR 1 467 0 1079 140 84 0 chr13 106026028 106026207 -13718691 - MLT1B LTR MaLR 0 390 197 7972 210 54 104 chr13 106026557 106027447 -13717451 - L1MA9 LINE L1 -25 7308 6375 2394 82 3 0 chr13 106027447 106027741 -13717157 + AluSq SINE Alu 1 295 -18 7972 210 54 104 chr13 106027741 106028015 -13716883 - L1MA9 LINE L1 -958 6375 6089 396 0 0 0 chr13 106028015 106028059 -13716839 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 7972 210 54 104 chr13 106028059 106028416 -13716482 - L1MA9 LINE L1 -1244 6089 5716 1156 177 0 29 chr13 106028416 106028581 -13716317 - AluJo SINE Alu -15 297 129 323 22 0 22 chr13 106028581 106028626 -13716272 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1942 100 41 0 chr13 106028626 106028896 -13716002 - AluSc SINE Alu -28 281 1 1156 177 0 29 chr13 106028896 106028938 -13715960 - AluJo SINE Alu -181 131 95 7972 210 54 104 chr13 106028938 106030492 -13714406 - L1MA9 LINE L1 -1617 5716 4086 814 169 0 40 chr13 106030492 106030640 -13714258 - AluSg/x SINE Alu -3 307 166 7972 210 54 104 chr13 106030640 106031367 -13713531 - L1MA9 LINE L1 -3247 4086 3324 2270 92 0 22 chr13 106031367 106031682 -13713216 - AluSx SINE Alu -4 308 1 7972 210 54 104 chr13 106031682 106035586 -13709312 - L1MA9 LINE L1 -4009 3324 8 513 296 0 41 chr13 106035771 106035967 -13708931 - MER5A DNA MER1_type -1 188 1 23 0 0 0 chr13 106037656 106037679 -13707219 + AT_rich Low_complexity Low_complexity 1 23 0 2789 142 51 37 chr13 106037695 106038208 -13706690 - L1MC1 LINE L1 0 6333 5814 557 100 0 0 chr13 106038208 106038278 -13706620 - AluY SINE Alu -26 285 216 1929 154 0 0 chr13 106038366 106038658 -13706240 - AluJb SINE Alu -20 292 1 737 266 137 14 chr13 106039509 106039787 -13705111 - MLT1J2 LTR MaLR -7 443 132 2573 60 35 0 chr13 106041104 106041419 -13703479 - L1PA4 LINE L1 -1 6154 5829 279 273 39 0 chr13 106041991 106042068 -13702830 + MER81 DNA DNA 35 114 0 301 191 36 0 chr13 106042362 106042446 -13702452 + CT-rich Low_complexity Low_complexity 1 87 0 1046 192 2 1 chr13 106042490 106042686 -13702212 - L1MC1 LINE L1 -729 5615 5416 478 265 38 0 chr13 106042916 106043048 -13701850 - Charlie8 DNA MER1_type -2231 186 50 292 276 17 35 chr13 106044861 106044977 -13699921 + L1MC5 LINE L1 7374 7487 -474 2220 273 120 45 chr13 106044998 106046069 -13698829 + L2 LINE L2 1597 2777 -537 2105 113 24 0 chr13 106046069 106046362 -13698536 + AluSc SINE Alu 1 300 -9 2220 273 120 45 chr13 106046362 106046538 -13698360 + L2 LINE L2 2777 2938 -376 328 252 130 32 chr13 106046536 106046659 -13698239 + L2 LINE L2 3179 3313 0 * 316 323 52 4 chr13 106046901 106047149 -13697749 + L1M4 LINE L1 2188 2447 -3699 249 256 105 0 chr13 106047202 106047288 -13697610 + L1M4 LINE L1 2521 2615 -3531 669 246 62 6 chr13 106047501 106047680 -13697218 + MER5A DNA MER1_type 1 189 0 3352 79 22 25 chr13 106048514 106048959 -13695939 + MLT2A1 LTR ERVL 1 444 0 225 0 0 0 chr13 106048999 106049024 -13695874 + (A)n Simple_repeat Simple_repeat 1 25 0 354 313 86 25 chr13 106049220 106049418 -13695480 + MIR SINE MIR 46 255 -7 453 239 188 6 chr13 106049965 106050119 -13694779 + MER5A DNA MER1_type 4 189 0 934 211 25 11 chr13 106051728 106051997 -13692901 + MER3 DNA MER1_type 21 2417 0 2378 100 0 0 chr13 106052142 106052443 -13692455 - AluSg SINE Alu -9 301 1 197 210 20 30 chr13 106052864 106052964 -13691934 + (TATATG)n Simple_repeat Simple_repeat 3 101 0 217 280 0 0 chr13 106054212 106054262 -13690636 + MIR SINE MIR 85 134 -128 1255 156 19 5 chr13 106054695 106054907 -13689991 - MER89 LTR ERV1 0 559 345 329 264 0 0 chr13 106054925 106054997 -13689901 - MER5A DNA MER1_type -52 137 66 1324 191 46 31 chr13 106055009 106055333 -13689565 - MER89 LTR ERV1 -229 330 2 223 143 54 28 chr13 106055380 106055423 -13689475 + MIR SINE MIR 74 192 -70 341 325 171 0 chr13 106055917 106056040 -13688858 + MER5B DNA MER1_type 1 144 -34 695 239 15 8 chr13 106056059 106056234 -13688664 - MER5A DNA MER1_type 0 189 3 610 81 0 12 chr13 106056974 106057060 -13687838 - MER89 LTR ERV1 -69 490 406 1971 133 3 19 chr13 106057292 106057608 -13687290 + AluSq SINE Alu 3 313 0 241 311 27 0 chr13 106058282 106058356 -13686542 - MIR SINE MIR -12 250 175 188 155 138 103 chr13 106058339 106058397 -13686501 - MIR3 SINE MIR -46 162 103 * 312 48 0 0 chr13 106058779 106058821 -13686077 + (TG)n Simple_repeat Simple_repeat 1 42 0 387 0 0 0 chr13 106059044 106059087 -13685811 + (TG)n Simple_repeat Simple_repeat 1 43 0 950 113 0 15 chr13 106060629 106060644 -13684254 - AluJb SINE Alu -181 131 117 315 0 0 0 chr13 106060644 106060679 -13684219 + (TG)n Simple_repeat Simple_repeat 2 36 0 950 113 0 15 chr13 106060679 106060796 -13684102 - AluJb SINE Alu -195 117 1 1160 242 111 36 chr13 106060940 106061329 -13683569 - MLT1E LTR MaLR 0 593 176 289 349 37 37 chr13 106062594 106062783 -13682115 + MIR SINE MIR 3 191 -71 1793 199 47 32 chr13 106063690 106064098 -13680800 - MLT2D LTR ERVL 0 414 1 389 275 150 33 chr13 106064408 106064637 -13680261 + MIR SINE MIR 4 251 -11 1847 169 228 0 chr13 106065693 106066071 -13678827 - LTR65 LTR ERV1 -37 632 169 1421 300 78 12 chr13 106066071 106066674 -13678224 - L2 LINE L2 -151 3162 2509 1137 117 17 5 chr13 106067228 106067520 -13677378 + L1P3 LINE L1 5179 5781 -382 37879 109 8 17 chr13 106067523 106073291 -13671607 + L1P2 LINE L1 11 5723 -431 1916 229 50 50 chr13 106073453 106074429 -13670469 - L1MCb LINE L1 -4852 1193 570 1722 265 12 46 chr13 106074554 106074672 -13670226 - L1MCb LINE L1 -5493 552 432 1939 169 14 34 chr13 106074672 106075022 -13669876 - MER61A LTR ERV1 0 343 1 1722 265 12 46 chr13 106075022 106075472 -13669426 - L1MCb LINE L1 -5613 432 3 4462 109 40 95 chr13 106075520 106076344 -13668554 + MER4E LTR ERV1 1 779 0 440 173 0 0 chr13 106076391 106076472 -13668426 + L1MB7 LINE L1 4313 4393 -1753 4282 176 31 70 chr13 106076604 106078507 -13666391 + L1MB7 LINE L1 4342 6184 0 630 320 72 19 chr13 106078515 106078943 -13665955 - L1MEd LINE L1 -5291 828 378 406 317 104 4 chr13 106079797 106080037 -13664861 + L2 LINE L2 1813 2076 -1238 1627 192 0 28 chr13 106080076 106080394 -13664504 - AluJo SINE Alu -3 309 1 210 329 61 24 chr13 106080468 106080550 -13664348 - L2 LINE L2 -43 3229 3145 404 268 140 32 chr13 106080605 106080829 -13664069 - L2 LINE L2 -231 3041 2793 450 305 20 51 chr13 106080831 106080944 -13663954 - L2 LINE L2 -634 2680 2565 2730 192 72 33 chr13 106080944 106081554 -13663344 - MER92B LTR ERV1 0 636 3 450 305 20 51 chr13 106081554 106081735 -13663163 - L2 LINE L2 -749 2565 2395 251 279 47 23 chr13 106081844 106081930 -13662968 + MLT2F LTR ERVL 305 392 -271 1047 216 13 0 chr13 106081949 106082176 -13662722 + Charlie2 DNA MER1_type 2628 2857 -5 268 136 0 0 chr13 106082351 106082395 -13662503 + MLT2B1 LTR ERVL 1 44 -476 * 1319 219 81 23 chr13 106082392 106082702 -13662196 + MLT2B1 LTR ERVL 151 478 -42 322 138 0 46 chr13 106082750 106082815 -13662083 + MLT2B1 LTR ERVL 454 515 0 2135 186 6 6 chr13 106082817 106083182 -13661716 + MLT1A1 LTR MaLR 1 365 0 2086 183 25 0 chr13 106083361 106083717 -13661181 - MLT1A1 LTR MaLR 0 365 1 196 300 50 0 chr13 106084604 106084664 -13660234 - L2 LINE L2 -5 3267 3205 1834 134 29 16 chr13 106084703 106085017 -13659881 + L1MA5A LINE L1 5965 6282 -15 322 131 33 16 chr13 106085184 106085245 -13659653 - L1MB3 LINE L1 -8 6175 6114 1753 259 110 34 chr13 106086841 106087666 -13657232 - L1MB4 LINE L1 -1 6179 5292 383 256 18 55 chr13 106087745 106087964 -13656934 - L1MB4 LINE L1 -2987 3159 2949 339 338 157 7 chr13 106088187 106088480 -13656418 - HAL1 LINE L1 -1029 1478 1142 264 163 47 116 chr13 106089341 106089427 -13655471 + MLT1I LTR MaLR 278 357 -52 678 202 78 10 chr13 106089452 106089645 -13655253 + L1 LINE L1 3164 3369 -2777 395 246 15 0 chr13 106089657 106089787 -13655111 + (TATG)n Simple_repeat Simple_repeat 3 134 0 269 271 42 31 chr13 106089788 106089884 -13655014 + L1MC4 LINE L1 6607 6703 -1339 211 216 0 0 chr13 106089885 106089922 -13654976 + (CATA)n Simple_repeat Simple_repeat 1 37 0 228 213 0 50 chr13 106089922 106090002 -13654896 - L1MC4 LINE L1 -1339 6703 6628 394 103 52 0 chr13 106090003 106090061 -13654837 + MER21A LTR ERV1 14 74 -857 3632 181 41 45 chr13 106090090 106090798 -13654100 + MER21A LTR ERV1 224 928 -3 3141 211 46 17 chr13 106090798 106091605 -13653293 + L1 LINE L1 3362 4191 -1955 217 217 56 21 chr13 106092261 106092404 -13652494 + (TTA)n Simple_repeat Simple_repeat 2 149 0 5179 93 10 9 chr13 106095124 106095819 -13649079 - L1PA13 LINE L1 -3 6160 5465 820 194 7 7 chr13 106096066 106096221 -13648677 - FRAM SINE Alu -13 163 9 2374 106 0 0 chr13 106096290 106096593 -13648305 + AluSc SINE Alu 1 303 -6 343 118 78 0 chr13 106096858 106096909 -13647989 + MLT1B LTR MaLR 334 388 -2 250 302 0 0 chr13 106097207 106097270 -13647628 + MLT1L LTR MaLR 1 63 -552 1688 215 56 63 chr13 106097628 106098266 -13646632 - L1ME2 LINE L1 -277 5887 5254 2173 207 19 13 chr13 106098474 106098942 -13645956 + MER31A LTR ERV1 1 471 -14 2670 96 23 25 chr13 106098943 106099276 -13645622 + L1MA1 LINE L1 5886 6219 -83 1331 69 5 32 chr13 106099276 106099464 -13645434 - L1PA4 LINE L1 0 6155 5973 2670 96 23 25 chr13 106099464 106099525 -13645373 + L1MA1 LINE L1 6219 6279 -23 2482 174 47 4 chr13 106099544 106100014 -13644884 + L1MB4 LINE L1 5681 6170 -10 610 233 21 1 chr13 106100166 106100302 -13644596 - MER5B DNA MER1_type -1 177 48 237 235 29 44 chr13 106100302 106100370 -13644528 + L1MEd LINE L1 656 722 -5397 2080 86 17 7 chr13 106100612 106100904 -13643994 + AluY SINE Alu 1 295 -16 431 321 165 5 chr13 106100906 106101429 -13643469 + L2 LINE L2 2711 3312 -1 474 259 174 32 chr13 106102233 106102480 -13642418 + L2 LINE L2 3031 3312 -1 2350 70 0 0 chr13 106104300 106104585 -13640313 - AluY SINE Alu -4 307 23 894 148 74 0 chr13 106106112 106106261 -13638637 + MER7A DNA MER2_type 2 159 -187 208 307 24 47 chr13 106106390 106106517 -13638381 + L2 LINE L2 2928 3051 -221 2087 172 13 25 chr13 106107361 106107756 -13637142 - MLT1B LTR MaLR 0 390 1 23 0 0 0 chr13 106108710 106108733 -13636165 + AT_rich Low_complexity Low_complexity 1 23 0 1973 154 73 22 chr13 106109239 106109610 -13635288 - MLT1B LTR MaLR 0 390 1 187 346 63 31 chr13 106110297 106110551 -13634347 - L2 LINE L2 -1105 2209 1948 310 259 62 0 chr13 106111377 106111458 -13633440 + MER58 DNA MER1_type 18 103 -2317 432 0 0 0 chr13 106111459 106111507 -13633391 + (CA)n Simple_repeat Simple_repeat 1 48 0 447 212 12 0 chr13 106111507 106111592 -13633306 + MER58 DNA MER1_type 130 2420 0 971 301 18 30 chr13 106111636 106112074 -13632824 + MER90 LTR ERV1 38 470 -105 1974 186 11 0 chr13 106112086 106112436 -13632462 - MER89 LTR ERV1 -9 550 197 324 282 0 0 chr13 106112409 106112494 -13632404 - MER89 LTR ERV1 -470 89 5 * 921 216 39 10 chr13 106112520 106112724 -13632174 + MLT1E2 LTR MaLR 399 608 -18 2393 102 136 97 chr13 106113006 106113795 -13631103 + pTR5 LTR ERV1 18 2438 0 311 268 127 47 chr13 106114021 106114234 -13630664 - MIR SINE MIR -13 249 20 252 0 0 0 chr13 106114600 106114628 -13630270 + (TG)n Simple_repeat Simple_repeat 2 29 0 1973 248 79 38 chr13 106115158 106115979 -13628919 + L1ME1 LINE L1 5204 6056 -110 886 213 124 24 chr13 106116085 106116376 -13628522 - MER119 DNA MER1_type -91 492 173 400 203 41 16 chr13 106117331 106117454 -13627444 + L1ME3A LINE L1 6037 6162 -8 918 273 90 21 chr13 106120536 106120956 -13623942 + MLT1J2 LTR MaLR 1 446 0 2526 72 0 0 chr13 106122788 106123095 -13621803 + AluY SINE Alu 1 307 -4 799 167 7 0 chr13 106124202 106124340 -13620558 + L1PA5 LINE L1 6012 6150 -4 3077 70 0 10 chr13 106124340 106124727 -13620171 + L1PA7 LINE L1 5767 6150 -4 2652 191 72 7 chr13 106124727 106124865 -13620033 + L1MB5 LINE L1 5323 5451 -723 195 100 0 0 chr13 106124865 106124895 -13620003 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2652 191 72 7 chr13 106124895 106125404 -13619494 + L1MB5 LINE L1 5451 5871 -303 562 290 69 62 chr13 106125916 106126306 -13618592 + L2 LINE L2 2486 2878 -436 434 278 23 51 chr13 106126491 106126667 -13618231 + L2 LINE L2 3143 3313 0 24 0 0 0 chr13 106126747 106126771 -13618127 + AT_rich Low_complexity Low_complexity 1 24 0 323 257 21 118 chr13 106127578 106127722 -13617176 - L2 LINE L2 0 3313 3184 25 51 0 0 chr13 106127794 106127833 -13617065 + AT_rich Low_complexity Low_complexity 1 39 0 282 228 0 0 chr13 106127893 106127950 -13616948 - L2 LINE L2 -243 3070 3014 186 322 26 43 chr13 106128028 106128143 -13616755 - L2 LINE L2 -719 2595 2483 1792 256 67 18 chr13 106128247 106128818 -13616080 - L2 LINE L2 -391 2923 2325 3041 173 6 9 chr13 106129971 106130508 -13614390 + L1MB2 LINE L1 5633 6167 -4 1020 191 0 0 chr13 106130538 106130711 -13614187 + AluJb SINE Alu 137 309 -3 1980 123 20 3 chr13 106130718 106131020 -13613878 + AluSg SINE Alu 1 307 -3 3025 175 6 9 chr13 106131827 106132364 -13612534 + L1MB2 LINE L1 5633 6167 -4 997 196 0 0 chr13 106132394 106132567 -13612331 + AluJb SINE Alu 137 309 -3 2398 92 0 3 chr13 106132574 106132878 -13612020 + AluSg SINE Alu 1 303 -7 231 337 151 20 chr13 106134036 106134235 -13610663 + MIR SINE MIR 20 244 -18 247 224 86 35 chr13 106134355 106134413 -13610485 - L2 LINE L2 -11 3261 3201 583 312 60 84 chr13 106135513 106136401 -13608497 + L2 LINE L2 2398 3272 0 22 0 0 0 chr13 106137747 106137769 -13607129 + AT_rich Low_complexity Low_complexity 1 22 0 223 364 74 16 chr13 106137949 106138070 -13606828 - L2 LINE L2 -4 3268 3141 396 298 63 19 chr13 106138166 106138324 -13606574 - MIR SINE MIR -78 184 20 263 287 79 20 chr13 106138435 106138536 -13606362 - L2 LINE L2 -219 3053 2947 233 185 77 31 chr13 106138840 106138855 -13606043 + AluYb8 SINE Alu 118 135 -173 1980 135 6 6 chr13 106138855 106139167 -13605731 + AluSx SINE Alu 1 312 0 1203 262 78 15 chr13 106139912 106140773 -13604125 - L1ME3A LINE L1 -261 5905 4906 22909 42 4 1 chr13 106142297 106145777 -13599121 + L1PA5 LINE L1 2567 6058 -96 208 162 27 0 chr13 106145878 106145915 -13598983 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 343 155 0 19 chr13 106145915 106145991 -13598907 + MLT2D LTR ERVL 367 414 0 * 1068 211 24 20 chr13 106145991 106146235 -13598663 - MER89 LTR ERV1 -314 245 1 3075 24 6 0 chr13 106146709 106147048 -13597850 - L1PA4 LINE L1 -3 6152 5812 1281 277 124 28 chr13 106148089 106148630 -13596268 + MLT1E LTR MaLR 1 593 0 843 159 138 37 chr13 106148829 106149018 -13595880 + MER20 DNA MER1_type 1 208 -11 3541 181 59 33 chr13 106149684 106150829 -13594069 + L1PA15-16 LINE L1 2338 3520 -3329 815 157 21 7 chr13 106150836 106150976 -13593922 + AluY SINE Alu 4 145 -166 3005 202 52 7 chr13 106151107 106151781 -13593117 + L1 LINE L1 4313 5016 -1130 822 220 4 65 chr13 106151793 106152038 -13592860 - L2 LINE L2 -864 2450 2221 490 263 69 48 chr13 106152049 106152415 -13592483 + L1MEd LINE L1 990 1415 -4895 2084 146 0 3 chr13 106152415 106152724 -13592174 + AluSx SINE Alu 1 308 -4 490 263 69 48 chr13 106152724 106152891 -13592007 + L1MEd LINE L1 1415 1577 -4733 5694 89 20 1 chr13 106153171 106153935 -13590963 - L1PA11 LINE L1 0 6174 5397 386 244 108 52 chr13 106154445 106154658 -13590240 + L2 LINE L2 3077 3301 -12 540 291 112 55 chr13 106154665 106155489 -13589409 + L1MEd LINE L1 2200 3070 -3059 363 137 27 14 chr13 106155490 106155563 -13589335 + ORSL DNA AcHobo 158 231 -44 361 311 0 10 chr13 106155996 106156099 -13588799 + L2 LINE L2 2981 3082 -231 660 282 58 40 chr13 106158371 106158648 -13586250 + L2 LINE L2 2614 2895 -419 504 283 84 32 chr13 106158688 106158999 -13585899 + L2 LINE L2 2982 3308 -5 233 250 33 0 chr13 106159268 106159328 -13585570 + CT-rich Low_complexity Low_complexity 2 63 0 230 237 54 54 chr13 106159427 106159520 -13585378 - HAL1 LINE L1 -1599 908 816 2093 163 99 6 chr13 106161345 106161707 -13583191 + MSTD LTR MaLR 1 396 0 2193 133 3 0 chr13 106161999 106162307 -13582591 - AluSp SINE Alu -4 309 1 392 164 0 0 chr13 106162711 106162772 -13582126 - Charlie3 DNA MER1_type 0 2712 2652 991 158 47 74 chr13 106163229 106163444 -13581454 + MER3 DNA MER1_type 1 209 0 209 355 21 11 chr13 106163444 106163537 -13581361 + L2 LINE L2 3148 3241 -31 7802 126 25 19 chr13 106163842 106164992 -13579906 + Tigger1 DNA MER2_type 1 1160 -1258 2769 89 11 37 chr13 106164992 106165373 -13579525 + THE1C LTR MaLR 5 375 0 7802 126 25 19 chr13 106165373 106165460 -13579438 + Tigger1 DNA MER2_type 1160 1245 -1173 398 250 10 10 chr13 106165696 106165792 -13579106 + MIR SINE MIR 37 132 -130 183 24 24 71 chr13 106167683 106167725 -13577173 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 252 246 33 107 chr13 106168627 106168749 -13576149 - MIR SINE MIR -70 192 80 916 250 0 32 chr13 106168783 106168999 -13575899 + MER92B LTR ERV1 71 279 -357 1891 130 6 53 chr13 106169016 106169339 -13575559 - AluSq SINE Alu -5 308 1 302 203 16 0 chr13 106169440 106169504 -13575394 + MER92A LTR ERV1 348 412 0 1261 168 138 3 chr13 106169864 106170333 -13574565 - LTR34 LTR ERV1 0 699 126 1417 124 0 0 chr13 106170341 106170542 -13574356 - L1MA2 LINE L1 -13 7710 7510 21576 156 33 12 chr13 106170543 106174560 -13570338 - L1MA2 LINE L1 -395 7328 3394 1850 168 3 3 chr13 106174560 106174857 -13570041 - AluSx SINE Alu -15 297 1 21576 156 33 12 chr13 106174857 106177936 -13566962 - L1MA2 LINE L1 -4329 3394 79 405 0 0 0 chr13 106177936 106177981 -13566917 + (TG)n Simple_repeat Simple_repeat 2 46 0 21576 156 33 12 chr13 106177981 106178047 -13566851 - L1MA2 LINE L1 -7644 79 16 629 200 59 0 chr13 106178053 106178188 -13566710 - LTR34 LTR ERV1 -547 152 10 2265 161 109 9 chr13 106180199 106180621 -13564277 + MLT2C2 LTR ERVL 1 464 0 2453 80 0 3 chr13 106181005 106181307 -13563591 + AluY SINE Alu 1 301 -10 2891 116 6 58 chr13 106182106 106182591 -13562307 - MER4B LTR ERV1 -36 574 115 722 309 181 16 chr13 106182811 106183258 -13561640 + L2 LINE L2 2346 2866 -448 16440 101 8 5 chr13 106183275 106186303 -13558595 - L1PA8 LINE L1 -18 6469 3429 14489 137 21 92 chr13 106186304 106187013 -13557885 - L1PA8 LINE L1 -3121 3340 2582 243 0 0 0 chr13 106187013 106187040 -13557858 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 14489 137 21 92 chr13 106187040 106189697 -13555201 - L1PA8 LINE L1 -3879 2582 5 1571 250 94 29 chr13 106189702 106190214 -13554684 - MLT1E2 LTR MaLR 0 626 82 455 347 10 10 chr13 106190276 106190495 -13554403 + L2 LINE L2 2786 3003 -310 917 252 41 41 chr13 106190507 106190852 -13554046 - LTR16B LTR ERVL -13 451 107 2128 205 20 9 chr13 106190866 106191314 -13553584 + L1MB4 LINE L1 5728 6180 0 366 329 124 9 chr13 106191402 106191627 -13553271 + L2 LINE L2 2979 3229 -84 23 0 0 0 chr13 106192800 106192823 -13552075 + AT_rich Low_complexity Low_complexity 1 23 0 1468 209 97 22 chr13 106194160 106194572 -13550326 - MLT1C LTR MaLR -24 443 1 2651 43 0 3 chr13 106194913 106195216 -13549682 + AluY SINE Alu 1 302 -9 449 300 63 11 chr13 106198215 106198405 -13546493 + MIR SINE MIR 29 228 -34 2195 130 0 9 chr13 106198552 106198867 -13546031 - AluSx SINE Alu 0 312 1 355 264 91 0 chr13 106199636 106199757 -13545141 + MIR SINE MIR 131 262 0 22 0 0 0 chr13 106202051 106202073 -13542825 + AT_rich Low_complexity Low_complexity 1 22 0 1591 189 0 47 chr13 106202574 106202896 -13542002 - AluJo SINE Alu -5 307 1 1964 138 7 14 chr13 106203692 106203989 -13540909 - AluSx SINE Alu -17 295 1 213 39 0 0 chr13 106204217 106204243 -13540655 + (CGGGG)n Simple_repeat Simple_repeat 1 26 0 396 312 69 22 chr13 106204497 106204691 -13540207 + MIR SINE MIR 18 220 -42 2096 138 3 0 chr13 106204912 106205208 -13539690 - AluSq SINE Alu -16 297 1 2135 196 30 24 chr13 106206168 106206662 -13538236 - Charlie4a DNA MER1_type -5 503 7 2263 195 42 20 chr13 106206664 106206865 -13538033 + MLT1C LTR MaLR 1 196 -271 246 32 0 0 chr13 106206865 106206896 -13538002 + (CA)n Simple_repeat Simple_repeat 2 32 0 2263 195 42 20 chr13 106206896 106207151 -13537747 + MLT1C LTR MaLR 196 467 0 389 245 101 7 chr13 106207296 106207435 -13537463 + MIR3 SINE MIR 34 185 -23 1903 120 62 0 chr13 106208356 106208630 -13536268 + AluSx SINE Alu 8 298 -14 504 212 8 53 chr13 106209298 106209430 -13535468 + L2 LINE L2 3145 3270 -43 767 183 0 13 chr13 106209441 106209672 -13535226 + GA-rich Low_complexity Low_complexity 1 227 0 15535 119 21 21 chr13 106211536 106212369 -13532529 - Tigger1 DNA MER2_type 0 2418 1586 2503 73 0 0 chr13 106212369 106212671 -13532227 - AluY SINE Alu -9 302 1 15535 119 21 21 chr13 106212671 106213104 -13531794 - Tigger1 DNA MER2_type -832 1586 1154 2795 87 11 37 chr13 106213104 106213485 -13531413 - THE1C LTR MaLR 0 375 5 15535 119 21 21 chr13 106213485 106214635 -13530263 - Tigger1 DNA MER2_type -1263 1155 1 198 309 44 0 chr13 106214940 106215008 -13529890 - L2 LINE L2 -31 3241 3171 996 158 47 74 chr13 106215033 106215248 -13529650 - MER3 DNA MER1_type 0 209 1 405 54 0 0 chr13 106216992 106217048 -13527850 + (GA)n Simple_repeat Simple_repeat 1 56 0 1711 101 0 0 chr13 106217562 106217780 -13527118 + AluSc SINE Alu 84 301 -8 40 37 0 0 chr13 106217908 106217962 -13526936 + AT_rich Low_complexity Low_complexity 1 54 0 222 315 139 59 chr13 106218484 106218722 -13526176 + L3b LINE CR1 1256 1512 -71 2457 136 22 8 chr13 106219203 106219572 -13525326 + THE1C LTR MaLR 2 375 0 10348 113 39 19 chr13 106219572 106221115 -13523783 + THE1C-int LTR MaLR 1 1573 -7 2599 116 11 19 chr13 106221120 106221498 -13523400 + THE1C LTR MaLR 1 375 0 282 358 0 0 chr13 106221946 106222041 -13522857 + L2 LINE L2 3180 3274 -39 730 188 37 86 chr13 106222533 106222778 -13522120 + MER33 DNA MER1_type 1 231 -93 46 74 0 0 chr13 106222778 106222873 -13522025 + AT_rich Low_complexity Low_complexity 1 95 0 250 135 0 27 chr13 106222878 106222952 -13521946 + (TTAA)n Simple_repeat Simple_repeat 2 73 0 202 189 38 0 chr13 106222952 106223005 -13521893 + (TA)n Simple_repeat Simple_repeat 2 56 0 243 184 35 11 chr13 106223014 106223101 -13521797 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 296 182 15 0 chr13 106223124 106223190 -13521708 + MER33 DNA MER1_type 252 318 -6 316 241 55 97 chr13 106223441 106223586 -13521312 + MIR3 SINE MIR 41 179 -29 201 150 0 25 chr13 106224157 106224180 -13520718 + (TCTA)n Simple_repeat Simple_repeat 1 24 -15 2209 117 0 0 chr13 106224180 106224480 -13520418 - AluSx SINE Alu -10 302 3 201 150 0 25 chr13 106224480 106224496 -13520402 + (TCTA)n Simple_repeat Simple_repeat 24 39 0 23 33 0 0 chr13 106225769 106225799 -13519099 + AT_rich Low_complexity Low_complexity 1 30 0 237 239 0 0 chr13 106226669 106226715 -13518183 + (TATTG)n Simple_repeat Simple_repeat 4 49 0 818 283 56 80 chr13 106226917 106227679 -13517219 - L1MC/D LINE L1 -419 5823 5103 1829 161 15 3 chr13 106227679 106228003 -13516895 + L1MA5 LINE L1 5971 6298 -2 818 283 56 80 chr13 106228003 106228351 -13516547 - L1MC/D LINE L1 -1139 5103 4748 344 269 158 45 chr13 106228339 106229212 -13515686 - L1MC/D LINE L1 -2857 3289 2318 * 420 235 15 88 chr13 106229605 106229741 -13515157 + L2 LINE L2 3188 3313 0 243 277 15 0 chr13 106230390 106230455 -13514443 + MIR3 SINE MIR 136 201 -7 2352 86 23 0 chr13 106231198 106231502 -13513396 - AluSx SINE Alu -1 311 1 225 184 0 0 chr13 106232369 106232407 -13512491 - L1MC4 LINE L1 -1340 6702 6665 1204 233 8 4 chr13 106233025 106233287 -13511611 - L1PA16 LINE L1 -16 6150 5888 276 304 13 0 chr13 106234979 106235058 -13509840 + MER69 DNA AcHobo 1 80 -2446 368 301 43 18 chr13 106235210 106235373 -13509525 + L2 LINE L2 3147 3313 0 31 68 0 0 chr13 106236756 106236815 -13508083 + AT_rich Low_complexity Low_complexity 1 59 0 4305 186 15 29 chr13 106238185 106239055 -13505843 + L1MB8 LINE L1 5320 6177 -1 331 171 80 34 chr13 106239503 106239591 -13505307 - L1ME4a LINE L1 -71 6050 5959 229 381 0 0 chr13 106239593 106239748 -13505150 - L1ME4a LINE L1 -202 5919 5765 398 250 10 10 chr13 106239830 106239926 -13504972 + MIR SINE MIR 37 132 -130 202 327 0 0 chr13 106240690 106240742 -13504156 + L2 LINE L2 3212 3263 -9 21 0 0 0 chr13 106241638 106241659 -13503239 + AT_rich Low_complexity Low_complexity 1 21 0 237 155 95 71 chr13 106241940 106242024 -13502874 + MLT1J1 LTR MaLR 6 91 -355 267 301 44 69 chr13 106242117 106242320 -13502578 + MLT1J2 LTR MaLR 243 440 -10 882 216 0 23 chr13 106242886 106243062 -13501836 - AluJo SINE Alu -14 298 127 2391 110 0 0 chr13 106243577 106243887 -13501011 - AluSx SINE Alu -2 310 1 1743 137 4 4 chr13 106244346 106244608 -13500290 + AluSx SINE Alu 40 301 -11 202 102 24 75 chr13 106245151 106245199 -13499699 - MIR SINE MIR -61 147 108 321 288 129 53 chr13 106248073 106248243 -13496655 + MIR3 SINE MIR 16 198 -10 2034 121 24 97 chr13 106248247 106248668 -13496230 - MLT1B LTR MaLR 0 390 1 2060 147 42 17 chr13 106248823 106249178 -13495720 + THE1B LTR MaLR 1 364 0 245 207 33 23 chr13 106250234 106250541 -13494357 + (TA)n Simple_repeat Simple_repeat 1 310 0 844 251 129 63 chr13 106250587 106251014 -13493884 - L2 LINE L2 -4 3309 2855 180 328 47 0 chr13 106251287 106251351 -13493547 + L3 LINE CR1 1402 1468 -109 231 274 129 48 chr13 106252083 106252207 -13492691 + L2 LINE L2 2995 3128 -185 391 281 59 37 chr13 106252296 106252431 -13492467 + L2 LINE L2 3176 3313 0 2313 105 73 14 chr13 106253864 106254208 -13490690 + THE1B LTR MaLR 1 364 0 560 78 49 49 chr13 106254406 106254508 -13490390 + L1MB2 LINE L1 6070 6171 0 251 297 55 0 chr13 106254870 106254961 -13489937 + MIR3 SINE MIR 111 206 -2 373 322 30 48 chr13 106256419 106256629 -13488269 + MIR SINE MIR 1 212 -50 252 0 0 0 chr13 106256732 106256760 -13488138 + (TC)n Simple_repeat Simple_repeat 1 28 0 489 239 253 16 chr13 106256765 106257089 -13487809 + MLT1E LTR MaLR 184 592 -1 297 286 143 0 chr13 106257263 106257361 -13487537 + L2 LINE L2 3201 3312 -1 189 0 0 0 chr13 106258620 106258641 -13486257 + (TA)n Simple_repeat Simple_repeat 1 21 0 1589 142 22 6 chr13 106259864 106260172 -13484726 - L1MC1 LINE L1 -196 5966 5655 2359 134 16 0 chr13 106260188 106260568 -13484330 + L1MC1 LINE L1 5948 6333 0 402 285 150 0 chr13 106263202 106263395 -13481503 + MER110 LTR ERV1 255 476 -15 24 0 0 0 chr13 106264261 106264285 -13480613 + AT_rich Low_complexity Low_complexity 1 24 0 412 125 150 12 chr13 106265018 106265098 -13479800 - Charlie2a DNA MER1_type -1293 1569 1479 670 262 113 8 chr13 106265246 106265494 -13479404 - Charlie2a DNA MER1_type -2553 309 36 221 109 18 55 chr13 106267661 106267716 -13477182 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 2274 105 7 0 chr13 106268803 106269097 -13475801 - AluSg SINE Alu -14 296 1 2225 118 3 0 chr13 106269659 106269964 -13474934 - AluSx SINE Alu -6 306 1 1766 156 7 29 chr13 106270861 106271169 -13473729 - AluJb SINE Alu -11 301 1 1657 210 62 90 chr13 106271176 106271967 -13472931 - L1MC5 LINE L1 -540 7421 6653 2873 70 5 3 chr13 106272027 106272413 -13472485 - L1PA7 LINE L1 0 6154 5768 257 352 0 8 chr13 106272935 106273060 -13471838 - HAL1b LINE L1 -850 498 375 25 0 0 0 chr13 106273071 106273096 -13471802 + AT_rich Low_complexity Low_complexity 1 25 0 471 282 47 24 chr13 106274223 106274674 -13470224 - L1M4 LINE L1 -2909 3237 2777 437 276 45 45 chr13 106274873 106275072 -13469826 - MIR SINE MIR -58 204 6 2490 59 0 3 chr13 106276194 106276501 -13468397 + AluY SINE Alu 1 306 -5 191 292 67 42 chr13 106276711 106276831 -13468067 + L2 LINE L2 3187 3309 -4 2300 50 0 4 chr13 106277221 106277520 -13467378 + AluY SINE Alu 3 300 0 1965 114 18 0 chr13 106277709 106277982 -13466916 - AluSx SINE Alu -16 296 19 209 266 47 0 chr13 106278432 106278496 -13466402 + L2 LINE L2 3242 3308 -5 237 33 0 0 chr13 106278597 106278627 -13466271 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5902 43 3 0 chr13 106278627 106279369 -13465529 - L1PA5 LINE L1 -16 6138 5395 189 0 0 0 chr13 106279680 106279701 -13465197 + (TC)n Simple_repeat Simple_repeat 2 22 0 213 340 107 31 chr13 106279725 106279884 -13465014 + L3 LINE CR1 208 378 -1199 301 269 75 0 chr13 106280161 106280254 -13464644 - MIR SINE MIR -36 226 127 423 345 35 7 chr13 106280450 106280592 -13464306 + L2 LINE L2 3127 3272 0 189 0 0 0 chr13 106282883 106282904 -13461994 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1147 149 6 0 chr13 106283085 106283259 -13461639 + FAM SINE Alu 1 175 0 474 317 64 67 chr13 106283401 106283776 -13461122 + HAL1 LINE L1 1197 1570 -937 305 315 9 27 chr13 106283914 106284025 -13460873 + GA-rich Low_complexity Low_complexity 2 110 0 201 237 0 0 chr13 106284350 106284409 -13460489 + (TA)n Simple_repeat Simple_repeat 1 59 0 2380 102 0 0 chr13 106284445 106284748 -13460150 - AluSx SINE Alu -9 303 1 194 270 0 40 chr13 106284897 106284971 -13459927 + MIR SINE MIR 180 250 -12 2453 72 3 10 chr13 106285765 106286070 -13458828 - AluSp SINE Alu -10 303 1 25 0 0 0 chr13 106286899 106286924 -13457974 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr13 106287571 106287615 -13457283 + AT_rich Low_complexity Low_complexity 1 44 0 383 325 32 24 chr13 106289052 106289178 -13455720 - L2 LINE L2 -41 3231 3105 1001 136 78 0 chr13 106289661 106289815 -13455083 - AluSg/x SINE Alu -12 300 135 795 156 0 16 chr13 106289880 106290008 -13454890 - FLAM_A SINE Alu -6 127 2 974 241 60 43 chr13 106290420 106290818 -13454080 - MLT1C LTR MaLR -3 464 60 276 393 30 7 chr13 106290906 106291041 -13453857 + L2 LINE L2 3133 3270 -2 2483 54 7 0 chr13 106291318 106291615 -13453283 + AluY SINE Alu 1 299 -12 595 291 95 49 chr13 106292156 106292650 -13452248 + L1ME3A LINE L1 5583 6099 -71 249 119 0 0 chr13 106295304 106295346 -13449552 + (CA)n Simple_repeat Simple_repeat 2 43 0 217 271 0 0 chr13 106295459 106295507 -13449391 + MIR SINE MIR 99 146 -62 264 291 88 20 chr13 106295862 106296010 -13448888 + L2 LINE L2 1776 1933 -1381 565 297 35 52 chr13 106296396 106296628 -13448270 - MIR SINE MIR -33 229 2 2926 199 148 113 chr13 106297423 106297955 -13446943 - L1MD3 LINE L1 -17 7978 7466 393 237 59 25 chr13 106297955 106298073 -13446825 - MLT1F1 LTR MaLR -445 122 1 2926 199 148 113 chr13 106298073 106298479 -13446419 - L1MD3 LINE L1 -529 7466 7076 258 32 0 0 chr13 106298479 106298510 -13446388 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2926 199 148 113 chr13 106298510 106298753 -13446145 - L1MD3 LINE L1 -919 7076 6634 399 297 49 14 chr13 106298826 106299056 -13445842 - L1MC4a LINE L1 -1164 6621 6389 873 279 30 10 chr13 106299457 106299755 -13445143 + L1MC4 LINE L1 6604 6907 -1135 2220 104 3 3 chr13 106300057 106300346 -13444552 - AluSg SINE Alu -11 299 11 2077 106 0 0 chr13 106302249 106302524 -13442374 - AluY SINE Alu 0 311 37 188 33 0 33 chr13 106302952 106302982 -13441916 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 276 326 0 12 chr13 106303405 106303491 -13441407 + L2 LINE L2 3186 3270 -43 690 335 37 15 chr13 106303520 106303845 -13441053 + L2 LINE L2 2234 2565 -749 2233 83 7 0 chr13 106303901 106304203 -13440695 + AluSx SINE Alu 6 309 0 258 303 193 9 chr13 106304560 106304669 -13440229 + L2 LINE L2 3142 3270 -2 2129 113 20 13 chr13 106305207 106305509 -13439389 - AluSq SINE Alu -9 304 1 22 0 0 0 chr13 106305509 106305531 -13439367 + AT_rich Low_complexity Low_complexity 1 22 0 1739 211 70 11 chr13 106306051 106306492 -13438406 - MLT1C LTR MaLR 0 467 1 1559 157 8 4 chr13 106306616 106306858 -13438040 - AluJb SINE Alu -30 282 40 4567 185 28 9 chr13 106307725 106307772 -13437126 - L1MB2 LINE L1 -5 6166 6121 1644 200 7 19 chr13 106307772 106308082 -13436816 - AluJo SINE Alu -6 306 1 4567 185 28 9 chr13 106308082 106309670 -13435228 - L1MB2 LINE L1 -50 6121 4501 306 171 171 0 chr13 106309671 106309741 -13435157 - Tigger5 DNA MER2_type 0 2323 2242 * 371 200 0 12 chr13 106309731 106309811 -13435087 + Tigger5 DNA MER2_type 2242 2320 -3 317 202 0 124 chr13 106309811 106309862 -13435036 - Tigger5 DNA MER2_type -288 78 41 2052 139 7 7 chr13 106309862 106310164 -13434734 + AluSx SINE Alu 2 303 -9 317 202 0 124 chr13 106310164 106310200 -13434698 - Tigger5 DNA MER2_type -325 41 2 497 175 48 0 chr13 106310200 106310326 -13434572 - L1MB2 LINE L1 -1644 4502 4371 448 336 139 41 chr13 106310336 106311521 -13433377 + L2 LINE L2 1944 3243 -29 791 119 0 22 chr13 106311653 106311787 -13433111 - L1PA8 LINE L1 0 6172 6042 203 350 33 42 chr13 106311989 106312109 -13432789 + MIR SINE MIR 23 141 -121 1279 200 110 18 chr13 106312405 106312849 -13432049 - MLT2B1 LTR ERVL 0 554 3 30 27 0 0 chr13 106313497 106313534 -13431364 + AT_rich Low_complexity Low_complexity 1 37 0 255 175 58 18 chr13 106313582 106313753 -13431145 + (TA)n Simple_repeat Simple_repeat 2 179 0 2338 51 0 27 chr13 106314881 106315173 -13429725 - AluY SINE Alu -27 284 1 1001 238 29 5 chr13 106315667 106315873 -13429025 + MIR SINE MIR 2 212 -50 27 0 0 0 chr13 106317659 106317686 -13427212 + AT_rich Low_complexity Low_complexity 1 27 0 244 332 45 20 chr13 106318942 106319141 -13425757 + L1ME LINE L1 5617 5820 -301 2266 207 56 15 chr13 106319146 106319667 -13425231 + MLT1F LTR MaLR 1 542 0 207 0 0 0 chr13 106319716 106319739 -13425159 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 68 0 0 chr13 106319913 106319957 -13424941 + AT_rich Low_complexity Low_complexity 1 44 0 2744 182 56 15 chr13 106320692 106321303 -13423595 + MER67C LTR ERV1 74 709 -1 1017 240 122 29 chr13 106322043 106322485 -13422413 - MLT1D LTR MaLR -7 498 16 1790 143 37 30 chr13 106322511 106322811 -13422087 - AluJb SINE Alu -10 302 1 1700 153 42 29 chr13 106323771 106324079 -13420819 + AluJb SINE Alu 1 312 0 2613 46 0 3 chr13 106324158 106324464 -13420434 + AluY SINE Alu 1 305 -6 23 0 0 0 chr13 106324741 106324764 -13420134 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr13 106325761 106325786 -13419112 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1949 125 4 0 chr13 106325786 106326065 -13418833 - AluSx SINE Alu -32 280 1 33 43 0 0 chr13 106328926 106328973 -13415925 + AT_rich Low_complexity Low_complexity 1 47 0 551 172 0 0 chr13 106329043 106329284 -13415614 + L1MC4a LINE L1 4896 5152 -994 576 117 0 39 chr13 106329284 106329350 -13415548 + L1MA7 LINE L1 6193 6255 -36 1719 165 18 21 chr13 106329350 106329689 -13415209 + MER44D DNA MER2_type 1 608 -1 576 117 0 39 chr13 106329689 106329725 -13415173 + L1MA7 LINE L1 6255 6291 0 551 172 0 0 chr13 106329725 106329840 -13415058 + L1MC4a LINE L1 5152 5271 -875 388 312 101 28 chr13 106329870 106330116 -13414782 + L1MC4a LINE L1 5314 5541 -621 338 246 166 21 chr13 106330116 106330303 -13414595 - MER58C DNA MER1_type 0 215 2 388 312 101 28 chr13 106330303 106330624 -13414274 + L1MC4a LINE L1 5541 5810 -352 249 159 0 0 chr13 106330853 106330897 -13414001 + (TA)n Simple_repeat Simple_repeat 1 44 0 244 252 0 65 chr13 106330904 106330999 -13413899 - L1MC4 LINE L1 -1339 6703 6614 2118 116 3 10 chr13 106330999 106331292 -13413606 - AluSq SINE Alu -22 291 1 244 252 0 65 chr13 106331292 106331303 -13413595 - L1MC4 LINE L1 -1428 6614 6604 475 193 102 24 chr13 106331337 106331503 -13413395 + MER104 DNA MER2_type 1 179 -1 23 33 0 0 chr13 106331666 106331696 -13413202 + AT_rich Low_complexity Low_complexity 1 30 0 276 374 12 48 chr13 106331791 106331957 -13412941 - MIR SINE MIR -83 179 20 26 0 0 0 chr13 106332317 106332343 -13412555 + AT_rich Low_complexity Low_complexity 1 26 0 230 178 22 0 chr13 106332672 106332717 -13412181 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 331 290 110 32 chr13 106333204 106333359 -13411539 + MIR SINE MIR 20 186 -76 201 94 0 0 chr13 106334967 106334999 -13409899 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 413 314 0 0 chr13 106335417 106335538 -13409360 - MIR SINE MIR -122 140 20 272 30 0 0 chr13 106335619 106335652 -13409246 - U2 snRNA snRNA -154 34 2 2373 107 0 0 chr13 106337024 106337332 -13407566 + AluSx SINE Alu 1 308 -4 358 311 27 40 chr13 106338096 106338244 -13406654 - HAL1b LINE L1 -457 891 746 227 359 0 0 chr13 106338694 106338772 -13406126 - HAL1 LINE L1 -599 1908 1831 278 266 13 13 chr13 106339577 106339656 -13405242 + CT-rich Low_complexity Low_complexity 3 81 0 7212 46 5 0 chr13 106340423 106341599 -13403299 + L1PA4 LINE L1 4971 6150 -5 4145 23 2 0 chr13 106341619 106342099 -13402799 + L1PA5 LINE L1 5660 6140 -14 1309 267 74 25 chr13 106342226 106342671 -13402227 + L2 LINE L2 2062 2528 -786 1467 157 58 16 chr13 106343465 106343940 -13400958 - L1MB7 LINE L1 -1 6183 5662 2352 94 0 3 chr13 106345522 106345819 -13399079 - AluSq SINE Alu -17 296 1 279 339 27 55 chr13 106347201 106347384 -13397514 - MIR SINE MIR -65 197 20 43 35 0 0 chr13 106347639 106347696 -13397202 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr13 106348268 106348290 -13396608 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 106348732 106348761 -13396137 + AT_rich Low_complexity Low_complexity 1 29 0 201 74 0 0 chr13 106349030 106349057 -13395841 + (TA)n Simple_repeat Simple_repeat 1 27 0 608 316 52 33 chr13 106349134 106349561 -13395337 - L1ME4a LINE L1 -196 5925 5491 2154 127 76 144 chr13 106349862 106350767 -13394131 + LTR12 LTR ERV1 1 714 0 2344 147 32 15 chr13 106350866 106351268 -13393630 + MSTB LTR MaLR 1 409 -17 27 62 0 0 chr13 106351795 106351843 -13393055 + AT_rich Low_complexity Low_complexity 1 48 0 367 316 38 8 chr13 106353070 106353203 -13391695 - MIR SINE MIR -8 254 118 189 0 0 0 chr13 106353953 106353974 -13390924 + (TA)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr13 106354288 106354320 -13390578 + AT_rich Low_complexity Low_complexity 1 32 0 7280 38 6 2 chr13 106355137 106356749 -13388149 + L1PA5 LINE L1 4527 6141 -13 332 242 57 16 chr13 106356856 106356980 -13387918 + L1ME LINE L1 58 186 -5933 335 299 75 61 chr13 106356990 106357204 -13387694 + L1ME LINE L1 220 436 -5683 320 288 45 23 chr13 106357204 106357381 -13387517 + L1ME LINE L1 4818 4998 -1131 628 285 28 30 chr13 106357388 106357659 -13387239 + L1ME LINE L1 5453 5699 -454 1244 240 59 36 chr13 106357667 106357986 -13386912 - MLT1E3 LTR MaLR 0 624 314 1048 53 0 0 chr13 106357986 106358146 -13386752 - L1PA5 LINE L1 0 6154 6018 1244 240 59 36 chr13 106358146 106358393 -13386505 - MLT1E3 LTR MaLR -310 314 1 277 309 0 0 chr13 106358472 106358556 -13386342 + L1ME LINE L1 5786 5869 -284 322 206 10 78 chr13 106360347 106360449 -13384449 + MLT1L LTR MaLR 181 275 -340 1525 202 71 55 chr13 106360569 106360817 -13384081 - MLT1C LTR MaLR 0 467 207 2641 138 21 5 chr13 106360817 106361236 -13383662 + MSTA LTR MaLR 3 428 0 1525 202 71 55 chr13 106361236 106361438 -13383460 - MLT1C LTR MaLR -260 207 10 286 211 92 55 chr13 106361465 106361574 -13383324 + MLT1K LTR MaLR 458 570 -18 180 321 89 45 chr13 106362130 106362242 -13382656 + MIR SINE MIR 53 169 -93 237 297 95 0 chr13 106362244 106362318 -13382580 - MIR SINE MIR -112 150 70 237 204 20 0 chr13 106363389 106363438 -13381460 + MER46C DNA MER2_type 2 51 -287 1680 108 5 0 chr13 106363497 106363720 -13381178 - AluSc SINE Alu -85 224 1 35656 76 3 1 chr13 106363720 106368371 -13376527 + HERVFH19I LTR ERV1 3058 7719 0 2042 113 178 12 chr13 106368371 106368788 -13376110 + LTR19A LTR ERV1 1 486 0 744 232 119 43 chr13 106368923 106369480 -13375418 + MER76 LTR ERV 3 658 -30 2546 167 22 7 chr13 106369623 106370072 -13374826 + LTR32 LTR ERVL 16 471 0 2278 107 33 38 chr13 106370668 106371034 -13373864 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr13 106371327 106371357 -13373541 + AT_rich Low_complexity Low_complexity 1 30 0 1514 163 59 42 chr13 106372201 106372556 -13372342 + MER46B DNA MER2_type 1 236 0 519 291 120 53 chr13 106372675 106373108 -13371790 + MLT1J LTR MaLR 25 486 -25 322 294 0 10 chr13 106373125 106373175 -13371723 + (TA)n Simple_repeat Simple_repeat 2 51 -51 1868 147 88 3 chr13 106373175 106373495 -13371403 + MER7A DNA MER2_type 2 346 0 322 294 0 10 chr13 106373495 106373546 -13371352 + (TA)n Simple_repeat Simple_repeat 51 102 0 265 306 56 0 chr13 106373600 106373672 -13371226 - L2 LINE L2 0 3272 3197 528 203 33 20 chr13 106373795 106373948 -13370950 - MER104 DNA Tc2 -25 155 1 21 36 0 0 chr13 106374050 106374078 -13370820 + AT_rich Low_complexity Low_complexity 1 28 0 344 288 41 34 chr13 106374362 106374508 -13370390 + MLT1K LTR MaLR 333 479 -109 2549 58 0 3 chr13 106374742 106375050 -13369848 - AluY SINE Alu -4 307 1 296 329 157 51 chr13 106375595 106375644 -13369254 + MIR SINE MIR 6 48 -214 2509 63 0 0 chr13 106375644 106375944 -13368954 - AluY SINE Alu -11 300 1 296 329 157 51 chr13 106375944 106376110 -13368788 + MIR SINE MIR 48 244 -18 1275 302 42 13 chr13 106376191 106376644 -13368254 + L2 LINE L2 2848 3313 0 518 25 50 0 chr13 106377114 106377194 -13367704 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 199 161 36 0 chr13 106377354 106377410 -13367488 + (TA)n Simple_repeat Simple_repeat 1 58 0 271 273 86 23 chr13 106377871 106377999 -13366899 + L1ME LINE L1 5564 5699 -422 7012 17 0 1 chr13 106378401 106379281 -13365617 + L1PA3 LINE L1 5326 6204 0 28 0 0 0 chr13 106379946 106379974 -13364924 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 106380768 106380789 -13364109 + AT_rich Low_complexity Low_complexity 1 21 0 288 264 75 99 chr13 106381768 106382233 -13362665 - L1MC4a LINE L1 -1898 5893 5440 189 121 0 0 chr13 106382636 106382669 -13362229 + (TC)n Simple_repeat Simple_repeat 2 34 0 230 233 97 19 chr13 106382717 106382820 -13362078 - L1MC4a LINE L1 -1812 4317 4207 370 324 124 28 chr13 106383189 106383544 -13361354 - L1MC4a LINE L1 -2379 3750 3362 375 334 92 23 chr13 106383582 106383744 -13361154 - L1MC4a LINE L1 -5510 609 460 2303 99 0 13 chr13 106383744 106384047 -13360851 - AluSx SINE Alu -13 299 1 375 334 92 23 chr13 106384047 106384363 -13360535 - L1MC4a LINE L1 -5659 460 98 587 356 62 46 chr13 106384950 106385579 -13359319 - HAL1b LINE L1 -639 709 71 207 0 0 0 chr13 106385690 106385713 -13359185 + (CAA)n Simple_repeat Simple_repeat 3 25 0 645 206 41 70 chr13 106387692 106387935 -13356963 - MER106A DNA MER1_type 0 236 1 1870 119 109 36 chr13 106387969 106388495 -13356403 + MER51A LTR ERV1 1 634 0 26 0 0 0 chr13 106389932 106389958 -13354940 + AT_rich Low_complexity Low_complexity 1 26 0 3501 91 12 26 chr13 106389965 106390471 -13354427 - L1PA10 LINE L1 -15 6153 5655 849 291 117 32 chr13 106390698 106391192 -13353706 + MER77 LTR ERV1 66 601 -4 232 363 10 20 chr13 106391287 106391389 -13353509 + MER21B LTR ERV1 606 706 -157 690 312 147 14 chr13 106391683 106393117 -13351781 + L1ME LINE L1 3591 5232 -914 381 318 64 40 chr13 106393281 106393577 -13351321 + L1ME LINE L1 5470 5772 -398 30 77 0 0 chr13 106395281 106395346 -13349552 + AT_rich Low_complexity Low_complexity 1 65 0 188 160 0 80 chr13 106395822 106395872 -13349026 + MIR SINE MIR 173 218 -44 23 54 0 0 chr13 106395941 106395978 -13348920 + AT_rich Low_complexity Low_complexity 1 37 0 560 224 122 0 chr13 106396034 106396190 -13348708 + MER58B DNA MER1_type 167 341 0 1851 151 41 0 chr13 106396405 106396697 -13348201 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr13 106396826 106396847 -13348051 + AT_rich Low_complexity Low_complexity 1 21 0 2843 7 0 0 chr13 106396914 106397221 -13347677 + AluYa5 SINE Alu 1 307 -4 488 231 33 0 chr13 106397225 106397346 -13347552 - L1MA10 LINE L1 -30 6304 6180 27 0 0 0 chr13 106397449 106397476 -13347422 + AT_rich Low_complexity Low_complexity 1 27 0 395 329 184 32 chr13 106397942 106399002 -13345896 + L2 LINE L2 215 1435 -1879 2226 101 0 3 chr13 106399070 106399367 -13345531 - AluSg SINE Alu -14 296 1 23 0 0 0 chr13 106400135 106400158 -13344740 + AT_rich Low_complexity Low_complexity 1 23 0 500 234 222 0 chr13 106401409 106401580 -13343318 - MIR SINE MIR -25 237 29 2250 88 0 3 chr13 106401628 106401938 -13342960 - AluY SINE Alu 0 309 1 276 130 0 0 chr13 106402037 106402083 -13342815 + (TA)n Simple_repeat Simple_repeat 1 46 0 8641 130 25 3 chr13 106402087 106404513 -13340385 - L1MA1 LINE L1 -29 6273 3791 742 253 99 0 chr13 106405068 106405270 -13339628 + MIR SINE MIR 31 252 -10 27 62 0 0 chr13 106406295 106406343 -13338555 + AT_rich Low_complexity Low_complexity 1 48 0 200 333 0 0 chr13 106406476 106406548 -13338350 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 691 155 199 25 chr13 106406780 106406941 -13337957 + MER5A DNA MER1_type 1 189 0 235 354 61 0 chr13 106406941 106407021 -13337877 + L3 LINE CR1 1491 1575 -2 1084 225 5 0 chr13 106407252 106407465 -13337433 + MLT1D LTR MaLR 292 505 0 546 281 31 40 chr13 106407892 106408116 -13336782 - MIR SINE MIR 0 262 41 220 301 205 32 chr13 106408290 106408446 -13336452 + MIR SINE MIR 10 192 -70 398 309 105 49 chr13 106409776 106410187 -13334711 + MLT1H LTR MaLR 107 540 -9 310 287 74 8 chr13 106410195 106410317 -13334581 + MLT1J1 LTR MaLR 26 155 -291 581 217 0 54 chr13 106410533 106410662 -13334236 - MER63 DNA MER1_type -262 800 679 270 0 0 0 chr13 106411516 106411546 -13333352 + (TA)n Simple_repeat Simple_repeat 2 31 0 27 92 0 0 chr13 106413568 106413644 -13331254 + AT_rich Low_complexity Low_complexity 1 76 0 335 230 9 0 chr13 106413896 106414009 -13330889 + (TG)n Simple_repeat Simple_repeat 1 114 0 252 212 0 0 chr13 106414059 106414125 -13330773 + (TG)n Simple_repeat Simple_repeat 2 67 0 358 241 6 6 chr13 106414188 106414350 -13330548 + (TG)n Simple_repeat Simple_repeat 1 162 0 319 254 6 6 chr13 106414382 106414559 -13330339 + (TG)n Simple_repeat Simple_repeat 2 178 0 626 316 71 34 chr13 106415928 106415975 -13328923 + L1ME LINE L1 5304 5348 -816 1955 62 0 0 chr13 106415975 106416217 -13328681 + AluY SINE Alu 68 309 -2 626 316 71 34 chr13 106416217 106416658 -13328240 + L1ME LINE L1 5348 5822 -342 650 225 157 0 chr13 106416678 106416869 -13328029 + MIR SINE MIR 42 262 0 2041 73 4 4 chr13 106418137 106418397 -13326501 + AluSc SINE Alu 50 309 0 310 206 0 118 chr13 106419268 106419370 -13325528 - L1MC4 LINE L1 -1339 6703 6614 204 188 24 24 chr13 106419951 106420036 -13324862 + (TTTA)n Simple_repeat Simple_repeat 2 86 0 491 257 27 20 chr13 106420198 106420346 -13324552 - Charlie8 DNA MER1_type -2187 230 82 2396 98 0 0 chr13 106420547 106420854 -13324044 + AluSg SINE Alu 1 307 -3 23 0 0 0 chr13 106421434 106421457 -13323441 + AT_rich Low_complexity Low_complexity 1 23 0 2624 0 0 3 chr13 106421839 106422184 -13322714 + AluYa5 SINE Alu 1 344 0 25 65 0 0 chr13 106422344 106422390 -13322508 + AT_rich Low_complexity Low_complexity 1 46 0 2080 113 0 0 chr13 106423187 106423461 -13321437 - AluSx SINE Alu -14 298 25 340 262 127 56 chr13 106423602 106423728 -13321170 + L2 LINE L2 3137 3271 -1 204 217 0 0 chr13 106423793 106423839 -13321059 + (TAG)n Simple_repeat Simple_repeat 1 46 0 5351 161 25 55 chr13 106423971 106425125 -13319773 + L1MA9 LINE L1 5181 6310 -2 241 218 90 90 chr13 106426512 106426645 -13318253 - MIR SINE MIR -1 261 129 1492 156 0 40 chr13 106427595 106427871 -13317027 - AluSx SINE Alu -8 304 40 601 265 45 65 chr13 106428686 106428977 -13315921 + MLT1J LTR MaLR 227 511 0 306 0 0 0 chr13 106429169 106429203 -13315695 + (CA)n Simple_repeat Simple_repeat 2 35 0 604 274 109 32 chr13 106429229 106429576 -13315322 - L1ME4a LINE L1 -236 5885 5512 575 329 22 15 chr13 106429694 106429899 -13314999 + MIR SINE MIR 12 222 -40 246 62 0 0 chr13 106431830 106431862 -13313036 + (TA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr13 106433149 106433170 -13311728 + AT_rich Low_complexity Low_complexity 1 21 0 217 174 0 22 chr13 106433282 106433328 -13311570 + A-rich Low_complexity Low_complexity 6 50 0 343 299 0 78 chr13 106433719 106433841 -13311057 - MER5B DNA MER1_type -2 176 67 1794 195 0 6 chr13 106433841 106434154 -13310744 - AluJo SINE Alu -1 311 1 343 299 0 78 chr13 106434154 106434185 -13310713 - MER5B DNA MER1_type -111 67 35 399 279 184 0 chr13 106435362 106435498 -13309400 - MIR SINE MIR -74 188 28 346 247 93 0 chr13 106435534 106435631 -13309267 + MIR SINE MIR 105 210 -52 251 226 151 28 chr13 106436323 106436429 -13308469 - MIR SINE MIR -95 167 49 1834 104 4 0 chr13 106436498 106436776 -13308122 + L1MA4A LINE L1 6016 6294 -9 213 39 0 0 chr13 106436861 106436887 -13308011 + (T)n Simple_repeat Simple_repeat 1 26 0 3975 65 50 2 chr13 106436887 106437408 -13307490 - MER11D LTR ERVK -96 801 256 1986 105 4 4 chr13 106440632 106440898 -13304000 - AluSx SINE Alu -18 294 29 634 258 79 11 chr13 106441001 106441191 -13303707 - MER20 DNA MER1_type -15 204 2 206 278 44 44 chr13 106441205 106441295 -13303603 + L2 LINE L2 3183 3272 0 282 29 0 0 chr13 106441727 106441762 -13303136 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 666 148 15 7 chr13 106442590 106442725 -13302173 + CT-rich Low_complexity Low_complexity 4 139 0 1073 173 0 0 chr13 106442745 106442918 -13301980 - AluSg/x SINE Alu -2 307 135 2260 119 0 0 chr13 106443745 106444055 -13300843 + AluSg SINE Alu 1 310 0 198 0 0 0 chr13 106444610 106444632 -13300266 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr13 106444911 106444933 -13299965 + AT_rich Low_complexity Low_complexity 1 22 0 442 216 10 10 chr13 106445408 106445505 -13299393 - L1MCa LINE L1 -6310 116 20 21 57 0 0 chr13 106446273 106446308 -13298590 + AT_rich Low_complexity Low_complexity 1 35 0 210 111 0 44 chr13 106446469 106446514 -13298384 + (TTTTTA)n Simple_repeat Simple_repeat 1 43 0 1444 81 0 10 chr13 106446566 106446764 -13298134 - L1PA8 LINE L1 -3 6169 5974 1480 163 79 11 chr13 106446765 106447042 -13297856 - AluJb SINE Alu -16 296 1 2258 100 0 3 chr13 106447050 106447359 -13297539 - AluSc SINE Alu -1 308 1 372 238 57 19 chr13 106448071 106448176 -13296722 + L2 LINE L2 3168 3276 -37 251 223 233 10 chr13 106449006 106449109 -13295789 - MIR SINE MIR -66 196 71 241 339 56 28 chr13 106449681 106449861 -13295037 - MIR SINE MIR -74 188 4 456 282 124 60 chr13 106450531 106450917 -13293981 + MLT1J1 LTR MaLR 36 446 0 1458 288 115 16 chr13 106452171 106453073 -13291825 + L2 LINE L2 2319 3313 0 15899 20 1 0 chr13 106453215 106455093 -13289805 - L1PA4 LINE L1 -1544 4602 2724 7401 30 14 0 chr13 106455093 106456629 -13288269 + L1PA4 LINE L1 4598 6155 0 26 74 0 0 chr13 106457361 106457415 -13287483 + AT_rich Low_complexity Low_complexity 1 54 0 221 283 217 9 chr13 106457713 106457819 -13287079 + L3 LINE CR1 417 544 -1033 23 54 0 0 chr13 106459523 106459560 -13285338 + AT_rich Low_complexity Low_complexity 1 37 0 1765 199 21 0 chr13 106460387 106460713 -13284185 - MER52A LTR ERV1 0 1755 1423 21 36 0 0 chr13 106462167 106462195 -13282703 + AT_rich Low_complexity Low_complexity 1 28 0 333 262 114 55 chr13 106463550 106463885 -13281013 + L1ME LINE L1 5292 5652 -518 207 222 32 16 chr13 106464877 106464940 -13279958 + MIR3 SINE MIR 144 207 -1 2304 102 3 3 chr13 106465013 106465317 -13279581 - AluSx SINE Alu -8 304 1 4525 33 7 0 chr13 106466760 106467303 -13277595 - L1P LINE L1 -1670 4476 3930 255 240 20 0 chr13 106468585 106468635 -13276263 + L2 LINE L2 3249 3299 -14 210 71 0 0 chr13 106468636 106468664 -13276234 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 209 338 86 43 chr13 106468838 106468977 -13275921 + MIR SINE MIR 3 147 -115 977 253 126 52 chr13 106468989 106469451 -13275447 - MLT1H LTR MaLR -13 536 41 1020 198 37 14 chr13 106470174 106470391 -13274507 - MER58A DNA MER1_type -2 222 1 1056 184 0 0 chr13 106470618 106470797 -13274101 - AluJb SINE Alu -14 298 120 396 232 119 0 chr13 106471040 106471168 -13273730 - MIR SINE MIR -74 188 46 222 284 74 25 chr13 106471284 106471365 -13273533 + MIR SINE MIR 110 194 -68 22 88 0 0 chr13 106471934 106471991 -13272907 + AT_rich Low_complexity Low_complexity 1 57 0 2183 104 7 0 chr13 106472061 106472349 -13272549 + AluSx SINE Alu 1 290 -22 200 35 35 0 chr13 106472350 106472379 -13272519 + (TA)n Simple_repeat Simple_repeat 1 30 0 712 333 106 65 chr13 106472511 106472957 -13271941 + L1MEd LINE L1 98 524 -5595 2453 99 8 60 chr13 106472957 106473341 -13271557 + THE1B LTR MaLR 1 364 0 712 333 106 65 chr13 106473341 106473827 -13271071 + L1MEd LINE L1 524 1068 -5051 364 271 43 42 chr13 106474374 106474671 -13270227 + L1MEd LINE L1 1054 1388 -4865 210 71 0 0 chr13 106474702 106474730 -13270168 + (A)n Simple_repeat Simple_repeat 1 28 0 180 200 0 0 chr13 106476466 106476506 -13268392 + (CA)n Simple_repeat Simple_repeat 2 41 0 492 273 62 16 chr13 106476969 106477163 -13267735 + L1ME LINE L1 5595 5762 -359 224 321 0 0 chr13 106477168 106477221 -13267677 + polypurine Low_complexity Low_complexity 4 56 0 2128 109 3 0 chr13 106479738 106480068 -13264830 - AluSx SINE Alu 0 331 1 336 320 78 7 chr13 106480353 106480506 -13264392 + MIR SINE MIR 87 250 -12 2123 101 0 4 chr13 106482449 106482752 -13262146 + AluY SINE Alu 4 305 0 269 308 100 8 chr13 106482955 106483075 -13261823 - MIR SINE MIR -14 248 118 613 300 25 12 chr13 106483842 106484082 -13260816 - HAL1b LINE L1 -861 487 245 1688 223 3 14 chr13 106484279 106484646 -13260252 + MLT1A1 LTR MaLR 1 363 -2 477 244 45 57 chr13 106484706 106484882 -13260016 - MER5B DNA MER1_type 0 178 5 22 35 0 0 chr13 106485363 106485392 -13259506 + AT_rich Low_complexity Low_complexity 1 29 0 300 309 65 0 chr13 106486058 106486181 -13258717 - L2 LINE L2 -10 3303 3173 781 211 0 0 chr13 106488047 106488189 -13256709 + FRAM SINE Alu 1 142 -34 399 21 0 0 chr13 106488201 106488249 -13256649 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 306 0 0 0 chr13 106488266 106488300 -13256598 + (TA)n Simple_repeat Simple_repeat 2 35 0 201 74 0 0 chr13 106488302 106488329 -13256569 + (GA)n Simple_repeat Simple_repeat 2 28 0 285 29 0 0 chr13 106488583 106488617 -13256281 + (TC)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr13 106488616 106488641 -13256257 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 305 349 147 18 chr13 106489044 106489316 -13255582 + L3b LINE CR1 1161 1467 -116 234 0 0 0 chr13 106489669 106489695 -13255203 + (CA)n Simple_repeat Simple_repeat 2 27 0 579 319 16 44 chr13 106490130 106490378 -13254520 + MIR SINE MIR 1 241 -21 202 287 70 70 chr13 106490504 106490619 -13254279 - MIR3 SINE MIR -11 197 83 389 340 168 5 chr13 106490727 106490936 -13253962 + MIR SINE MIR 20 262 0 347 324 66 0 chr13 106490993 106491129 -13253769 + MIR SINE MIR 117 261 -1 27 0 0 0 chr13 106491130 106491157 -13253741 + AT_rich Low_complexity Low_complexity 1 27 0 741 276 38 23 chr13 106491871 106492135 -13252763 + MLT1D LTR MaLR 1 268 -237 184 328 239 22 chr13 106492136 106492846 -13252052 + L2 LINE L2 2040 2903 -411 1377 205 83 37 chr13 106493144 106493511 -13251387 + MLT2D LTR ERVL 1 480 -40 206 128 26 0 chr13 106493537 106493576 -13251322 + (TA)n Simple_repeat Simple_repeat 2 41 0 213 39 0 0 chr13 106493636 106493662 -13251236 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 251 291 126 8 chr13 106494459 106494586 -13250312 - L2 LINE L2 0 3313 3172 285 109 0 0 chr13 106494834 106494880 -13250018 + (GA)n Simple_repeat Simple_repeat 1 46 0 2001 128 3 0 chr13 106496450 106496752 -13248146 + AluSx SINE Alu 1 303 0 2222 159 13 18 chr13 106497250 106497639 -13247259 + MSTB LTR MaLR 1 387 -39 20860 107 13 7 chr13 106497639 106501582 -13243316 + L1PA8 LINE L1 2192 6158 -14 612 242 70 37 chr13 106501793 106502008 -13242890 - L1MC4 LINE L1 -533 7509 7288 298 352 186 0 chr13 106502172 106502317 -13242581 + MER5A DNA MER1_type 11 182 -7 827 144 40 0 chr13 106502434 106502607 -13242291 + CT-rich Low_complexity Low_complexity 1 180 0 198 0 0 0 chr13 106502617 106502639 -13242259 + (TTCC)n Simple_repeat Simple_repeat 2 23 0 1719 163 3 11 chr13 106502639 106502921 -13241977 - AluSx SINE Alu -32 280 1 264 163 0 0 chr13 106502921 106502964 -13241934 + MSTB LTR MaLR 382 424 -2 412 308 79 2 chr13 106503945 106504131 -13240767 + MIR SINE MIR 16 212 -50 23 54 0 0 chr13 106504374 106504411 -13240487 + AT_rich Low_complexity Low_complexity 1 37 0 8607 162 16 7 chr13 106504799 106507263 -13237635 + L1MA4 LINE L1 3809 6292 -8 2553 126 0 0 chr13 106507425 106507798 -13237100 - L1PA15 LINE L1 0 6165 5793 30 59 0 0 chr13 106507878 106507929 -13236969 + AT_rich Low_complexity Low_complexity 1 51 0 325 331 46 23 chr13 106508047 106508177 -13236721 + MER94 DNA DNA 2 134 0 36 33 0 16 chr13 106509007 106509033 -13235865 + AT_rich Low_complexity Low_complexity 1 26 -34 2164 170 23 38 chr13 106509033 106509509 -13235389 - L1MA7 LINE L1 -6 6285 5817 36 33 0 16 chr13 106509509 106509543 -13235355 + AT_rich Low_complexity Low_complexity 26 60 0 257 50 0 25 chr13 106510375 106510415 -13234483 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 4021 26 0 0 chr13 106510415 106510879 -13234019 - L1PA3 LINE L1 -24 6131 5668 2085 136 0 0 chr13 106511112 106511414 -13233484 + AluSx SINE Alu 1 302 -10 303 28 0 0 chr13 106511755 106511791 -13233107 + (TG)n Simple_repeat Simple_repeat 1 36 0 224 398 41 10 chr13 106512663 106512761 -13232137 - L2 LINE L2 -3 3269 3169 382 269 11 11 chr13 106513019 106513112 -13231786 + L1MEd LINE L1 246 338 -5781 377 281 94 21 chr13 106513135 106513327 -13231571 + L1M4 LINE L1 4767 4972 -1174 320 241 23 0 chr13 106513334 106513352 -13231546 - L1MA10 LINE L1 -3 6331 6314 1945 246 46 16 chr13 106513352 106513900 -13230998 - L1ME1 LINE L1 -13 6153 5590 946 191 0 12 chr13 106513903 106514071 -13230827 - FRAM SINE Alu 0 166 1 23 0 0 0 chr13 106514082 106514105 -13230793 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 106514576 106514597 -13230301 + AT_rich Low_complexity Low_complexity 1 21 0 2797 262 85 41 chr13 106514708 106516297 -13228601 + L1M4 LINE L1 2398 4106 -2040 2102 115 0 34 chr13 106516853 106517175 -13227723 - AluSx SINE Alu -1 311 1 23 0 0 0 chr13 106517217 106517240 -13227658 + AT_rich Low_complexity Low_complexity 1 23 0 206 250 16 62 chr13 106517372 106517436 -13227462 - L2 LINE L2 -86 3227 3167 269 345 28 21 chr13 106517795 106517937 -13226961 - MIR SINE MIR 0 262 120 1176 96 0 0 chr13 106518949 106519134 -13225764 + AluSc SINE Alu 125 309 0 571 170 36 0 chr13 106520293 106520405 -13224493 + L1MB1 LINE L1 6045 6160 -8 204 97 0 0 chr13 106520405 106520436 -13224462 + (CAAAT)n Simple_repeat Simple_repeat 3 33 0 571 141 41 16 chr13 106520844 106520965 -13223933 + L1MA5 LINE L1 6175 6298 -2 23 0 0 0 chr13 106521012 106521035 -13223863 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 106521135 106521157 -13223741 + AT_rich Low_complexity Low_complexity 1 22 0 5783 53 25 1 chr13 106521698 106522447 -13222451 + L1PA7 LINE L1 5385 6151 -3 1069 237 93 44 chr13 106522447 106522829 -13222069 + L1P LINE L1 2432 2832 -3314 324 0 0 0 chr13 106523446 106523482 -13221416 + (CA)n Simple_repeat Simple_repeat 2 37 0 228 184 0 0 chr13 106524171 106524220 -13220678 + CT-rich Low_complexity Low_complexity 2 50 0 441 257 136 0 chr13 106524242 106524382 -13220516 - L2 LINE L2 -42 3271 3113 25 0 0 0 chr13 106525065 106525090 -13219808 + AT_rich Low_complexity Low_complexity 1 25 0 225 333 0 0 chr13 106526089 106526143 -13218755 + L2 LINE L2 3201 3254 -18 275 350 79 10 chr13 106527523 106527826 -13217072 + L2 LINE L2 2634 2957 -357 255 227 0 186 chr13 106528384 106528604 -13216294 + MER104 DNA Tc2 2 180 0 294 352 56 7 chr13 106528935 106529077 -13215821 + L2 LINE L2 3123 3271 -1 32 26 0 0 chr13 106529170 106529209 -13215689 + AT_rich Low_complexity Low_complexity 1 39 0 2877 6 0 0 chr13 106529528 106529843 -13215055 + AluYb8 SINE Alu 1 315 -3 2230 120 0 0 chr13 106532388 106532696 -13212202 + AluSx SINE Alu 1 308 -4 305 246 104 109 chr13 106533385 106533454 -13211444 + L1MC5 LINE L1 3067 3135 -3011 1624 50 0 0 chr13 106533454 106533653 -13211245 + L1PA5 LINE L1 5948 6146 -8 305 246 104 109 chr13 106533653 106533977 -13210921 + L1MC5 LINE L1 3135 3458 -2688 1778 157 4 4 chr13 106533991 106534271 -13210627 + AluJo SINE Alu 3 282 -30 2033 121 0 10 chr13 106534298 106534634 -13210264 + AluSc SINE Alu 8 340 0 533 276 66 50 chr13 106535181 106535637 -13209261 + L1MC5 LINE L1 4077 4539 -1607 625 281 42 5 chr13 106535772 106535964 -13208934 + L1MC5 LINE L1 5360 5558 -2250 411 262 19 97 chr13 106535973 106536162 -13208736 + L1MC5 LINE L1 7364 7519 -442 1707 112 40 0 chr13 106536162 106536413 -13208485 + AluSp SINE Alu 40 300 -13 411 262 19 97 chr13 106536413 106536544 -13208354 + L1MC5 LINE L1 7519 7659 -302 21 57 0 0 chr13 106536555 106536590 -13208308 + AT_rich Low_complexity Low_complexity 1 35 0 197 354 10 52 chr13 106536967 106537063 -13207835 - MIR SINE MIR -152 110 19 236 274 82 14 chr13 106538414 106538487 -13206411 + L2 LINE L2 3191 3268 -4 304 186 17 0 chr13 106539654 106539713 -13205185 - L1MCa LINE L1 -4361 2065 2006 211 253 35 23 chr13 106539713 106539800 -13205098 + (TA)n Simple_repeat Simple_repeat 1 88 0 322 211 47 10 chr13 106539989 106540297 -13204601 + (TA)n Simple_repeat Simple_repeat 1 319 0 234 239 23 11 chr13 106540310 106540398 -13204500 + (TA)n Simple_repeat Simple_repeat 1 89 0 303 186 203 0 chr13 106541797 106541915 -13202983 - Charlie7 DNA MER1_type -31 2581 2440 184 250 197 13 chr13 106542659 106542735 -13202163 - MIR SINE MIR -6 256 167 360 64 0 0 chr13 106543133 106543180 -13201718 + (TG)n Simple_repeat Simple_repeat 1 47 0 1782 109 101 40 chr13 106543335 106543682 -13201216 + THE1C LTR MaLR 1 368 -7 25 31 0 0 chr13 106544441 106544473 -13200425 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr13 106545723 106545758 -13199140 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 276 233 178 11 chr13 106545760 106545850 -13199048 - L2 LINE L2 -11 3302 3198 215 291 93 12 chr13 106546596 106546682 -13198216 - L2 LINE L2 -47 3266 3174 226 250 36 45 chr13 106546970 106547082 -13197816 - L1ME4a LINE L1 -1 6120 6010 196 320 27 0 chr13 106547087 106547162 -13197736 - L2 LINE L2 -2 3311 3235 1787 162 3 35 chr13 106548622 106548937 -13195961 + AluJb SINE Alu 1 305 -7 271 103 0 0 chr13 106548968 106549013 -13195885 - MIR SINE MIR -119 143 100 323 311 101 14 chr13 106549854 106550002 -13194896 + L3 LINE CR1 1412 1572 -5 340 272 308 0 chr13 106550138 106550307 -13194591 - MIR SINE MIR -1 261 41 355 286 135 30 chr13 106550497 106550714 -13194184 - MIR SINE MIR -8 254 16 183 184 0 0 chr13 106551251 106551289 -13193609 + CT-rich Low_complexity Low_complexity 1 38 0 1027 181 28 14 chr13 106551870 106552086 -13192812 - L1MB1 LINE L1 -15 6174 5956 384 218 30 127 chr13 106552390 106552453 -13192445 + MER5B DNA MER1_type 2 70 -108 954 218 182 3 chr13 106552453 106552761 -13192137 + MLT1A1 LTR MaLR 3 365 0 384 218 30 127 chr13 106552761 106552862 -13192036 + MER5B DNA MER1_type 70 150 -28 2214 86 3 23 chr13 106553934 106554236 -13190662 - AluSg SINE Alu -14 296 1 377 369 37 48 chr13 106554531 106554905 -13189993 - HAL1b LINE L1 -883 465 96 298 233 85 63 chr13 106555983 106556172 -13188726 + L1ME4a LINE L1 5709 5901 -220 1649 181 3 26 chr13 106556469 106556773 -13188125 - AluJb SINE Alu -15 297 1 228 67 0 0 chr13 106557797 106557827 -13187071 + (TA)n Simple_repeat Simple_repeat 2 31 0 372 277 139 92 chr13 106558319 106559128 -13185770 + L1M2 LINE L1 580 1406 -5443 34 0 0 0 chr13 106559154 106559188 -13185710 + AT_rich Low_complexity Low_complexity 1 34 0 451 219 0 0 chr13 106560857 106560953 -13183945 - FRAM SINE Alu -4 172 77 1266 104 0 0 chr13 106561187 106561350 -13183548 - AluSq SINE Alu -147 166 4 735 146 0 32 chr13 106561352 106561475 -13183423 + AluSg/x SINE Alu 175 293 -17 2135 141 34 11 chr13 106561825 106562179 -13182719 + THE1B LTR MaLR 1 362 -2 659 305 101 81 chr13 106563979 106564195 -13180703 - HAL1b LINE L1 -641 707 497 1775 143 99 9 chr13 106564195 106564537 -13180361 - THE1C LTR MaLR 0 375 3 659 305 101 81 chr13 106564537 106564973 -13179925 - HAL1b LINE L1 -851 497 42 21 0 0 0 chr13 106565186 106565207 -13179691 + AT_rich Low_complexity Low_complexity 1 21 0 226 266 43 0 chr13 106565443 106565537 -13179361 + L1ME1 LINE L1 2853 2950 -3196 492 258 69 65 chr13 106565548 106566024 -13178874 + L1ME1 LINE L1 3047 3524 -2622 21 0 0 0 chr13 106566188 106566209 -13178689 + AT_rich Low_complexity Low_complexity 1 21 0 1603 249 126 36 chr13 106566252 106567243 -13177655 + L1ME1 LINE L1 5086 6159 -7 499 255 53 13 chr13 106567258 106567525 -13177373 + L1MC4 LINE L1 7507 7899 -143 258 32 0 0 chr13 106567648 106567679 -13177219 + (CA)n Simple_repeat Simple_repeat 2 32 0 1736 51 0 0 chr13 106567743 106567958 -13176940 - L1PA7 LINE L1 -250 5904 5690 1830 60 4 0 chr13 106567958 106568204 -13176694 + L1PA7 LINE L1 5922 6176 0 22 35 0 0 chr13 106568613 106568642 -13176256 + AT_rich Low_complexity Low_complexity 1 29 0 288 315 39 31 chr13 106569175 106569302 -13175596 + L3 LINE CR1 1352 1479 -98 189 350 21 49 chr13 106569348 106569491 -13175407 - L2 LINE L2 0 3272 3134 28 0 0 0 chr13 106570192 106570220 -13174678 + AT_rich Low_complexity Low_complexity 1 28 0 201 211 0 0 chr13 106571653 106571691 -13173207 + L2 LINE L2 3270 3307 -6 206 373 82 6 chr13 106571719 106571877 -13173021 + L2 LINE L2 2588 2757 -557 735 213 61 6 chr13 106572087 106572251 -13172647 + MLT1B LTR MaLR 1 173 -217 273 115 33 16 chr13 106572269 106572330 -13172568 + CT-rich Low_complexity Low_complexity 1 62 0 538 239 21 7 chr13 106572344 106572486 -13172412 + MLT1B LTR MaLR 201 344 -46 251 172 0 17 chr13 106572486 106572544 -13172354 + A-rich Low_complexity Low_complexity 2 58 0 639 275 47 44 chr13 106572740 106573103 -13171795 + L2 LINE L2 2812 3271 -42 183 129 0 0 chr13 106574511 106574542 -13170356 + (CAT)n Simple_repeat Simple_repeat 2 32 0 243 103 0 0 chr13 106574800 106574839 -13170059 + (CAGG)n Simple_repeat Simple_repeat 2 40 0 695 240 88 0 chr13 106574892 106575084 -13169814 - MER3 DNA MER1_type 0 209 1 365 319 130 5 chr13 106575402 106575587 -13169311 + MIR SINE MIR 52 259 -3 371 246 64 47 chr13 106576779 106576950 -13167948 - MER5B DNA MER1_type -1 177 4 23 0 0 0 chr13 106576960 106576983 -13167915 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 106580378 106580401 -13164497 + AT_rich Low_complexity Low_complexity 1 23 0 292 269 86 65 chr13 106581123 106581216 -13163682 - MER5A DNA MER1_type -6 183 78 994 215 49 101 chr13 106582674 106583229 -13161669 - MLT1E1 LTR MaLR -8 585 51 5243 120 62 2 chr13 106583441 106584549 -13160349 + L1PA16 LINE L1 5008 6163 -3 209 194 48 16 chr13 106585142 106585204 -13159694 + G-rich Low_complexity Low_complexity 3 66 0 43004 50 2 1 chr13 106585307 106591022 -13153876 - L1P2 LINE L1 -434 5721 2 387 293 73 73 chr13 106591231 106591490 -13153408 + HAL1b LINE L1 97 355 -993 238 246 69 31 chr13 106591734 106591864 -13153034 + L1ME LINE L1 5729 5863 -307 317 298 133 21 chr13 106592446 106592634 -13152264 + L1MC4a LINE L1 3242 3450 -2696 23 33 0 0 chr13 106593215 106593245 -13151653 + AT_rich Low_complexity Low_complexity 1 30 0 1471 168 40 7 chr13 106593381 106593684 -13151214 + L1MA3 LINE L1 5993 6305 0 232 157 0 20 chr13 106593723 106593774 -13151124 + LTR66 LTR ERVL 390 439 -171 326 353 89 28 chr13 106593969 106594360 -13150538 + L1MC4a LINE L1 3521 3935 -2211 21 71 0 0 chr13 106595323 106595365 -13149533 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr13 106595538 106595566 -13149332 + AT_rich Low_complexity Low_complexity 1 28 0 352 305 55 70 chr13 106595709 106596041 -13148857 + L1MC4a LINE L1 5519 5846 -1962 1771 247 41 25 chr13 106596041 106596552 -13148346 + LTR40a LTR ERVL 1 519 0 352 305 55 70 chr13 106596552 106596616 -13148282 + L1MC4a LINE L1 5846 5909 -1899 183 350 68 10 chr13 106597070 106597173 -13147725 - L2 LINE L2 -1361 1953 1845 1865 196 55 44 chr13 106599556 106599833 -13145065 - MLT1C LTR MaLR -4 463 178 2070 107 10 10 chr13 106599833 106600123 -13144775 - AluSp SINE Alu -23 290 1 1865 196 55 44 chr13 106600123 106600303 -13144595 - MLT1C LTR MaLR -289 178 1 205 202 0 36 chr13 106601662 106601746 -13143152 + (TATG)n Simple_repeat Simple_repeat 4 84 0 580 332 9 42 chr13 106602095 106602217 -13142681 - MIR SINE MIR -34 228 114 1333 208 48 83 chr13 106602217 106602399 -13142499 + MLT1C LTR MaLR 1 188 -279 2287 73 17 0 chr13 106602399 106602687 -13142211 + AluSp SINE Alu 1 293 -20 1333 208 48 83 chr13 106602687 106602986 -13141912 + MLT1C LTR MaLR 188 465 -2 580 332 9 42 chr13 106602986 106603077 -13141821 - MIR SINE MIR -148 114 22 212 317 0 0 chr13 106603389 106603449 -13141449 + (CATA)n Simple_repeat Simple_repeat 4 63 0 2226 108 16 7 chr13 106603853 106604160 -13140738 + AluSg SINE Alu 1 310 0 1127 193 20 16 chr13 106604256 106604505 -13140393 + L1PB4 LINE L1 5893 6142 -14 242 286 16 95 chr13 106604805 106604931 -13139967 - MIR SINE MIR -68 140 25 240 122 0 0 chr13 106604931 106604972 -13139926 + (TG)n Simple_repeat Simple_repeat 2 42 0 186 370 10 40 chr13 106605350 106605450 -13139448 - MIR3 SINE MIR -13 195 99 365 258 153 37 chr13 106605735 106605898 -13139000 + MIR SINE MIR 73 254 -8 207 354 12 37 chr13 106605931 106606013 -13138885 - MIR3 SINE MIR -114 94 15 709 256 61 14 chr13 106606455 106606815 -13138083 - MER97a DNA MER1_type? 0 894 518 346 140 0 0 chr13 106606977 106607034 -13137864 + Alu SINE Alu 244 300 0 7628 132 14 4 chr13 106607044 106608270 -13136628 - Tigger1 DNA MER2_type -1155 1263 26 609 258 57 50 chr13 106609984 106610283 -13134615 + LTR16A1 LTR ERVL 8 308 -149 358 293 89 27 chr13 106610417 106610583 -13134315 - L1MEd LINE L1 -3594 2535 2350 1697 159 184 11 chr13 106610583 106610948 -13133950 + MSTA LTR MaLR 1 428 0 358 293 89 27 chr13 106610948 106611006 -13133892 - L1MEd LINE L1 -3779 2350 2297 797 284 154 71 chr13 106611126 106611380 -13133518 - L1MEd LINE L1 -4619 1691 1460 2439 51 3 0 chr13 106611380 106611674 -13133224 - AluY SINE Alu -16 295 1 797 284 154 71 chr13 106611674 106612441 -13132457 - L1MEd LINE L1 -4850 1460 574 21 0 0 0 chr13 106612807 106612828 -13132070 + AT_rich Low_complexity Low_complexity 1 21 0 316 288 51 42 chr13 106612955 106613073 -13131825 + L2 LINE L2 2887 3005 -308 1017 144 9 81 chr13 106613083 106613211 -13131687 - L1PA16 LINE L1 -7 6159 6023 189 0 0 0 chr13 106613211 106613232 -13131666 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1975 136 4 0 chr13 106613232 106613512 -13131386 - AluSx SINE Alu -31 281 1 1017 144 9 81 chr13 106613512 106613604 -13131294 - L1PA16 LINE L1 -141 6025 5954 21 0 0 0 chr13 106613608 106613629 -13131269 + AT_rich Low_complexity Low_complexity 1 21 0 1444 205 78 6 chr13 106613744 106614090 -13130808 - MSTB LTR MaLR -55 371 1 1582 177 10 23 chr13 106614502 106614807 -13130091 + AluJo SINE Alu 1 301 -11 1559 263 74 16 chr13 106614911 106615490 -13129408 - MLT1E2 LTR MaLR 0 626 14 2041 128 0 0 chr13 106615686 106615976 -13128922 - AluSx SINE Alu -22 290 1 264 351 47 20 chr13 106616026 106616174 -13128724 + MIR SINE MIR 20 171 -91 2120 118 34 0 chr13 106616996 106617292 -13127606 - AluSx SINE Alu -6 306 1 183 129 0 0 chr13 106617625 106617656 -13127242 + (TA)n Simple_repeat Simple_repeat 2 32 0 585 76 0 0 chr13 106617872 106617951 -13126947 + L1P LINE L1 4059 4137 -2009 494 287 88 15 chr13 106618145 106618417 -13126481 + L1ME LINE L1 5461 5752 -369 717 294 89 23 chr13 106618465 106618768 -13126130 - L2 LINE L2 -42 3271 2949 30 27 0 0 chr13 106619194 106619231 -13125667 + AT_rich Low_complexity Low_complexity 1 37 0 345 287 82 16 chr13 106619389 106619511 -13125387 - L2 LINE L2 -15 3298 3169 236 208 0 19 chr13 106621013 106621066 -13123832 + LTR40a LTR ERVL 468 519 0 271 278 14 14 chr13 106621069 106621141 -13123757 + L2 LINE L2 3185 3256 -16 221 255 0 0 chr13 106622329 106622376 -13122522 + MIR SINE MIR 2 48 -214 192 250 23 0 chr13 106624250 106624294 -13120604 + L2 LINE L2 3228 3272 0 1867 146 76 15 chr13 106627609 106627952 -13116946 + THE1B LTR MaLR 1 364 0 504 241 64 54 chr13 106629119 106629322 -13115576 - MIR3 SINE MIR -1 207 3 184 310 17 52 chr13 106633253 106633311 -13111587 + L2 LINE L2 3149 3204 -68 391 41 0 0 chr13 106633324 106633373 -13111525 - L1PA7 LINE L1 -570 5602 5554 3655 101 2 25 chr13 106633373 106633938 -13110960 + L1PA7 LINE L1 5601 6153 -1 1891 179 19 21 chr13 106635155 106635530 -13109368 - MLT1A2 LTR MaLR 0 374 1 223 233 0 23 chr13 106636911 106636954 -13107944 + L2 LINE L2 3211 3252 -20 350 275 126 18 chr13 106637863 106638030 -13106868 + L1ME LINE L1 5392 5576 -545 550 308 71 16 chr13 106638038 106638220 -13106678 + MER91A DNA MER1_type 3 194 -2 291 325 34 8 chr13 106638552 106638669 -13106229 - L2 LINE L2 -2 3311 3192 778 283 50 35 chr13 106638992 106639275 -13105623 - L2 LINE L2 -2 3311 3025 833 103 0 41 chr13 106639290 106639435 -13105463 + L1PA16 LINE L1 5871 6009 -157 229 279 0 15 chr13 106639586 106639654 -13105244 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 27 29 0 0 chr13 106639774 106639808 -13105090 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 106639921 106639942 -13104956 + AT_rich Low_complexity Low_complexity 1 21 0 321 338 62 37 chr13 106640254 106640659 -13104239 - L1M4 LINE L1 -1486 4660 4246 303 231 67 48 chr13 106640996 106641100 -13103798 + L2 LINE L2 3196 3301 -12 599 315 79 28 chr13 106641549 106641977 -13102921 + MLT1L LTR MaLR 156 605 -10 2306 289 187 39 chr13 106642129 106643650 -13101248 - L2 LINE L2 -308 3005 1211 1150 82 0 6 chr13 106643650 106643809 -13101089 + L1PA10 LINE L1 6009 6166 -2 2306 289 187 39 chr13 106643809 106643953 -13100945 - L2 LINE L2 -2102 1211 1090 702 260 137 34 chr13 106646918 106647299 -13097599 + HsTC2 DNA Tc2 1274 1693 -205 206 250 263 0 chr13 106648076 106648152 -13096746 + MIR SINE MIR 35 130 -132 489 34 0 0 chr13 106648404 106648463 -13096435 + (TG)n Simple_repeat Simple_repeat 2 60 0 640 264 50 22 chr13 106649811 106649993 -13094905 + MER5A DNA MER1_type 3 189 0 504 218 54 0 chr13 106651418 106651565 -13093333 + L1MEc LINE L1 1016 1170 -5226 4982 137 16 5 chr13 106651752 106652253 -13092645 + L1PB1 LINE L1 5271 5788 -363 198 0 0 0 chr13 106652253 106652275 -13092623 + (TA)n Simple_repeat Simple_repeat 1 22 0 4982 137 16 5 chr13 106652275 106652643 -13092255 + L1PB1 LINE L1 5788 6150 -1 286 174 65 36 chr13 106652648 106652786 -13092112 + (TATAA)n Simple_repeat Simple_repeat 4 145 0 313 280 34 0 chr13 106652813 106652931 -13091967 + (TA)n Simple_repeat Simple_repeat 2 123 0 21 71 0 0 chr13 106653925 106653967 -13090931 + AT_rich Low_complexity Low_complexity 1 42 0 853 261 150 52 chr13 106653967 106654427 -13090471 - L2 LINE L2 0 3313 2809 1114 279 94 55 chr13 106656806 106657777 -13087121 - HAL1 LINE L1 -745 1762 754 243 0 0 0 chr13 106657826 106657853 -13087045 + (TG)n Simple_repeat Simple_repeat 2 28 0 219 69 0 0 chr13 106657852 106657881 -13087017 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 304 288 135 18 chr13 106657944 106658055 -13086843 - HAL1 LINE L1 -1904 603 480 330 211 53 38 chr13 106658358 106658491 -13086407 - LTR16A1 LTR ERVL -320 137 3 340 396 25 17 chr13 106658491 106658731 -13086167 - L2 LINE L2 -481 2833 2592 371 349 198 46 chr13 106659170 106659970 -13084928 + L3 LINE CR1 441 1361 -216 550 160 9 38 chr13 106661057 106661163 -13083735 - MER5A DNA MER1_type -86 103 1 538 335 75 45 chr13 106661196 106661530 -13083368 + MER115 DNA AcHobo 87 430 -263 389 227 65 4 chr13 106661827 106661953 -13082945 + MIR3 SINE MIR 53 184 -24 336 359 61 0 chr13 106662111 106662242 -13082656 + L2 LINE L2 3134 3272 0 222 152 0 0 chr13 106662281 106662314 -13082584 + L2 LINE L2 3222 3254 -18 694 141 0 89 chr13 106664629 106664764 -13080134 - FLAM_C SINE Alu -10 123 1 2134 111 10 0 chr13 106665655 106665943 -13078955 + AluSx SINE Alu 2 292 -20 23 0 0 0 chr13 106665943 106665966 -13078932 + AT_rich Low_complexity Low_complexity 1 23 0 1936 154 3 3 chr13 106666902 106667194 -13077704 + AluSq SINE Alu 1 292 -21 985 222 66 5 chr13 106667198 106667410 -13077488 + MIR SINE MIR 28 252 -10 243 170 57 0 chr13 106667463 106667516 -13077382 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 1531 118 0 5 chr13 106667900 106668111 -13076787 + AluSg/x SINE Alu 99 308 -4 182 370 99 50 chr13 106668299 106668742 -13076156 - L2 LINE L2 -4 3268 2804 1153 155 193 30 chr13 106668833 106669129 -13075769 + MER2 DNA MER2_type 1 344 0 1839 163 10 3 chr13 106669729 106670036 -13074862 + AluJb SINE Alu 1 309 -3 23 101 0 0 chr13 106670076 106670155 -13074743 + AT_rich Low_complexity Low_complexity 1 79 0 428 328 68 54 chr13 106671436 106671921 -13072977 - L2 LINE L2 -1212 2102 1611 186 133 0 0 chr13 106673161 106673191 -13071707 + (CAA)n Simple_repeat Simple_repeat 2 31 0 563 0 0 27 chr13 106673531 106673606 -13071292 - L1PA2 LINE L1 -3 6152 6080 251 0 0 0 chr13 106673606 106673635 -13071263 + L1P1 LINE L1 5440 5468 -687 15926 162 36 47 chr13 106676283 106683214 -13061684 + L1M1 LINE L1 284 7155 -569 998 288 66 15 chr13 106683314 106683907 -13060991 + L1MEc LINE L1 1193 1815 -4581 5148 84 37 29 chr13 106683954 106684118 -13060780 + L1PB2 LINE L1 5313 5474 -677 2114 100 41 0 chr13 106684118 106684409 -13060489 + AluY SINE Alu 1 303 -8 5148 84 37 29 chr13 106684409 106685074 -13059824 + L1PB2 LINE L1 5474 6149 -2 22 0 0 0 chr13 106686963 106686985 -13057913 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 106687340 106687364 -13057534 + AT_rich Low_complexity Low_complexity 1 24 0 272 175 159 0 chr13 106687460 106687523 -13057375 + MER116 DNA Mariner 5 77 -3 23 33 0 0 chr13 106687797 106687827 -13057071 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 106688781 106688809 -13056089 + AT_rich Low_complexity Low_complexity 1 28 0 411 269 58 53 chr13 106689814 106689985 -13054913 - MER5B DNA MER1_type -6 172 1 306 0 0 0 chr13 106690335 106690369 -13054529 + (CA)n Simple_repeat Simple_repeat 2 35 0 374 247 147 40 chr13 106690789 106690939 -13053959 - MIR SINE MIR -12 250 85 271 0 51 0 chr13 106692506 106692545 -13052353 + (CA)n Simple_repeat Simple_repeat 2 42 0 2283 254 72 26 chr13 106692549 106692663 -13052235 - L1ME3 LINE L1 -100 6062 5955 2475 40 7 3 chr13 106692663 106692962 -13051936 - AluY SINE Alu -11 300 1 2283 254 72 26 chr13 106692962 106694338 -13050560 - L1ME3 LINE L1 -207 5955 4496 248 79 0 0 chr13 106694321 106694359 -13050539 - L1MA4A LINE L1 -22 6281 6244 * 28 29 0 0 chr13 106697393 106697428 -13047470 + GC_rich Low_complexity Low_complexity 1 35 0 319 244 110 106 chr13 106697521 106697767 -13047131 - L1M2 LINE L1 -5936 913 667 303 332 171 47 chr13 106697633 106698413 -13046485 + L1M2 LINE L1 529 1404 -5445 * 30 45 0 0 chr13 106700356 106700400 -13044498 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr13 106700475 106700503 -13044395 + AT_rich Low_complexity Low_complexity 1 28 0 343 295 90 60 chr13 106700557 106700923 -13043975 - L2 LINE L2 -16 3297 2921 22 35 0 0 chr13 106701846 106701875 -13043023 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 106702803 106702824 -13042074 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 106702877 106702897 -13042001 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 309 164 0 0 chr13 106703574 106703629 -13041269 - Alu SINE Alu -245 55 1 2696 157 2 4 chr13 106703631 106704082 -13040816 - L1MB3 LINE L1 -46 6137 5688 353 253 0 48 chr13 106704144 106704227 -13040671 + MER58A DNA MER1_type 1 79 -28 240 262 29 58 chr13 106704387 106704490 -13040408 - MIR SINE MIR -62 200 101 2218 84 13 23 chr13 106704637 106704813 -13040085 - AluSp SINE Alu -8 305 132 306 0 0 0 chr13 106704813 106704847 -13040051 + (TA)n Simple_repeat Simple_repeat 2 35 0 2218 84 13 23 chr13 106704847 106704978 -13039920 - AluSp SINE Alu -181 132 1 258 259 47 101 chr13 106704983 106705096 -13039802 - MIR SINE MIR -65 143 39 1068 189 23 14 chr13 106705096 106705313 -13039585 - MER20 DNA MER1_type 0 219 1 258 259 47 101 chr13 106705313 106705347 -13039551 - MIR SINE MIR -169 39 5 573 259 24 30 chr13 106705456 106705622 -13039276 + MIR SINE MIR 8 172 -90 287 336 62 27 chr13 106705899 106706045 -13038853 - MIR3 SINE MIR 0 208 58 567 294 28 39 chr13 106707566 106707746 -13037152 - MER5B DNA MER1_type 0 178 1 294 98 0 0 chr13 106708015 106708066 -13036832 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2060 88 48 0 chr13 106708066 106708339 -13036559 - AluSx SINE Alu -26 286 1 507 33 0 0 chr13 106711073 106711134 -13033764 + (TG)n Simple_repeat Simple_repeat 2 62 0 698 305 75 9 chr13 106712478 106712691 -13032207 - MIR SINE MIR -34 228 2 24 0 0 0 chr13 106712931 106712955 -13031943 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 106713139 106713168 -13031730 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr13 106714262 106714308 -13030590 + (CA)n Simple_repeat Simple_repeat 2 47 0 277 269 41 28 chr13 106714521 106714666 -13030232 + L1M4 LINE L1 3786 3932 -2214 1876 267 42 62 chr13 106714822 106715761 -13029137 - L1MC4 LINE L1 -410 7632 6713 1151 281 18 12 chr13 106715766 106716093 -13028805 - MER93a LTR ERV1 0 402 74 744 285 43 37 chr13 106716200 106717290 -13027608 - L1MC4 LINE L1 -1192 6616 5600 209 357 71 63 chr13 106718780 106719018 -13025880 - MIR SINE MIR -3 259 20 413 320 75 94 chr13 106719048 106719485 -13025413 + L2 LINE L2 2429 2857 -457 262 390 9 0 chr13 106720205 106720310 -13024588 - L2 LINE L2 -9 3304 3199 21 36 0 0 chr13 106720592 106720620 -13024278 + AT_rich Low_complexity Low_complexity 1 28 0 454 369 54 1 chr13 106721300 106721536 -13023362 - MIR SINE MIR -10 252 7 245 242 0 0 chr13 106723253 106723319 -13021579 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 1525 72 5 5 chr13 106725682 106725890 -13019008 - L1PA5 LINE L1 -4 6150 5943 479 312 64 54 chr13 106726544 106727169 -13017729 - L1ME4a LINE L1 -3 6118 5488 383 282 110 33 chr13 106727274 106727547 -13017351 - L1ME4a LINE L1 -746 5400 5107 321 293 0 10 chr13 106727597 106727696 -13017202 - L1P LINE L1 -1131 5015 4918 1960 75 10 34 chr13 106728623 106728918 -13015980 + L1MA1 LINE L1 6015 6302 0 211 333 155 21 chr13 106730109 106730416 -13014482 - L2 LINE L2 -208 3064 2715 256 250 38 62 chr13 106730419 106730499 -13014399 - L2 LINE L2 -862 2452 2375 2243 82 3 3 chr13 106730674 106730965 -13013933 - AluY SINE Alu -19 292 2 310 308 96 39 chr13 106731670 106731878 -13013020 - MIR SINE MIR -6 256 37 24 32 0 0 chr13 106733056 106733087 -13011811 + AT_rich Low_complexity Low_complexity 1 31 0 219 69 0 0 chr13 106733534 106733563 -13011335 + (TG)n Simple_repeat Simple_repeat 2 30 0 2052 138 3 0 chr13 106736138 106736436 -13008462 - AluSx SINE Alu -10 302 4 240 242 61 15 chr13 106736715 106736781 -13008117 + MIR3 SINE MIR 139 207 -1 295 247 91 58 chr13 106737188 106737342 -13007556 - MIR SINE MIR -55 207 49 1200 192 24 0 chr13 106737615 106737865 -13007033 + L1MA10 LINE L1 4358 4613 -1533 4508 173 50 25 chr13 106737867 106739269 -13005629 + L1MA6 LINE L1 4844 6273 -27 3458 168 17 9 chr13 106739294 106739948 -13004950 + L1MA10 LINE L1 4613 5271 -875 1959 176 27 130 chr13 106739950 106740026 -13004872 - MSTB LTR MaLR -1 431 349 1964 141 0 7 chr13 106740026 106740316 -13004582 + AluSx SINE Alu 1 288 -24 1959 176 27 130 chr13 106740316 106740718 -13004180 - MSTB LTR MaLR -83 349 2 3827 173 45 98 chr13 106740719 106741826 -13003072 + L1MA10 LINE L1 5276 6323 -11 347 64 0 0 chr13 106741962 106742009 -13002889 - L1MC/D LINE L1 -524 5809 5763 2329 167 36 28 chr13 106742009 106742472 -13002426 + L1MC1 LINE L1 5846 6315 -18 385 234 48 48 chr13 106742484 106742629 -13002269 - L1M4 LINE L1 -3454 2692 2548 207 69 0 0 chr13 106742649 106742678 -13002220 + (A)n Simple_repeat Simple_repeat 1 29 0 2128 117 0 7 chr13 106742781 106743088 -13001810 - AluSg SINE Alu -5 305 1 194 0 39 0 chr13 106743609 106743635 -13001263 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 22185 29 1 0 chr13 106743671 106747126 -12997772 - L1PA4 LINE L1 0 6155 2698 3068 186 39 19 chr13 106747796 106748495 -12996403 - L1MB7 LINE L1 0 6184 5472 328 149 0 0 chr13 106750065 106750132 -12994766 - LTR66 LTR ERVL -150 460 394 207 259 0 0 chr13 106750138 106750196 -12994702 + (TA)n Simple_repeat Simple_repeat 2 59 0 * 229 315 0 0 chr13 106750150 106750239 -12994659 - L1MC4 LINE L1 -1339 6703 6615 * 257 300 0 0 chr13 106750196 106750286 -12994612 + L1MC4 LINE L1 6614 6703 -1339 549 265 0 0 chr13 106750289 106750459 -12994439 + (TA)n Simple_repeat Simple_repeat 1 170 0 243 322 0 0 chr13 106750524 106750614 -12994284 - L1MC4 LINE L1 -1339 6703 6614 241 234 104 0 chr13 106750547 106750624 -12994274 + L1MC4 LINE L1 6615 6699 -1343 * 378 243 0 0 chr13 106750628 106750731 -12994167 + (TA)n Simple_repeat Simple_repeat 2 104 0 233 270 23 33 chr13 106750702 106750824 -12994074 + L1MC4 LINE L1 6614 6705 -1337 * 310 243 0 53 chr13 106750841 106751030 -12993868 + (TATG)n Simple_repeat Simple_repeat 2 180 0 237 208 0 0 chr13 106751068 106751121 -12993777 + L1MC4 LINE L1 6648 6700 -1342 286 264 22 0 chr13 106751159 106751250 -12993648 - L1MC4 LINE L1 -1336 6706 6614 229 49 0 49 chr13 106751294 106751335 -12993563 + (TA)n Simple_repeat Simple_repeat 2 40 0 202 102 0 41 chr13 106751411 106751460 -12993438 + (TA)n Simple_repeat Simple_repeat 1 47 0 553 344 68 11 chr13 106751834 106752113 -12992785 + MLT1I LTR MaLR 113 407 -2 24 53 0 0 chr13 106752186 106752224 -12992674 + AT_rich Low_complexity Low_complexity 1 38 0 282 272 29 7 chr13 106752607 106752743 -12992155 - L1ME LINE L1 -241 5880 5742 23 33 0 0 chr13 106754977 106755007 -12989891 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr13 106755360 106755397 -12989501 + AT_rich Low_complexity Low_complexity 1 37 0 857 223 104 0 chr13 106755803 106756005 -12988893 + MER58A DNA MER1_type 2 224 0 220 286 51 31 chr13 106756815 106756913 -12987985 + MIR3 SINE MIR 4 103 -105 216 0 0 0 chr13 106758529 106758553 -12986345 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 362 306 202 16 chr13 106758555 106758862 -12986036 - L2 LINE L2 -7 3306 2943 390 225 85 85 chr13 106758954 106759083 -12985815 - MER5B DNA MER1_type -33 145 17 25 0 0 0 chr13 106759570 106759595 -12985303 + AT_rich Low_complexity Low_complexity 1 25 0 1254 218 106 38 chr13 106760190 106760616 -12984282 - MLT1C LTR MaLR -4 463 9 955 159 0 6 chr13 106760725 106760882 -12984016 + MLT1A1 LTR MaLR 1 156 -209 853 181 28 0 chr13 106760882 106761026 -12983872 + FRAM SINE Alu 4 151 -25 33 0 0 0 chr13 106761027 106761060 -12983838 + AT_rich Low_complexity Low_complexity 1 33 0 1246 176 14 0 chr13 106761060 106761281 -12983617 + MLT1A1 LTR MaLR 142 365 0 2091 125 7 13 chr13 106761714 106762019 -12982879 - AluSx SINE Alu -1 311 9 25 51 0 0 chr13 106762864 106762903 -12981995 + AT_rich Low_complexity Low_complexity 1 39 0 226 267 23 0 chr13 106763708 106763794 -12981104 - MLT1K LTR MaLR -19 569 482 1927 195 83 13 chr13 106764435 106764907 -12979991 + MLT1D LTR MaLR 1 505 0 514 222 105 0 chr13 106765444 106765615 -12979283 - MER69 DNA AcHobo -5 2521 2333 776 302 151 11 chr13 106765765 106766116 -12978782 - MER69 DNA AcHobo -2123 403 4 383 250 50 33 chr13 106767423 106767543 -12977355 - MIR SINE MIR 0 262 141 317 62 21 0 chr13 106768133 106768181 -12976717 + (TG)n Simple_repeat Simple_repeat 2 50 0 32 43 0 0 chr13 106768398 106768444 -12976454 + AT_rich Low_complexity Low_complexity 1 46 0 2245 102 0 3 chr13 106770795 106771090 -12973808 - AluSq SINE Alu -19 294 1 341 321 104 31 chr13 106771090 106771283 -12973615 - MIR SINE MIR 0 262 56 247 262 114 59 chr13 106771317 106771446 -12973452 + MER5A DNA MER1_type 4 146 -43 374 287 140 18 chr13 106771510 106771838 -12973060 - HsTC2 DNA Tc2 -1054 844 477 371 320 23 8 chr13 106772169 106772297 -12972601 + MIR SINE MIR 20 149 -113 5938 155 29 12 chr13 106772514 106773655 -12971243 - L1MC1 LINE L1 0 6333 5175 2349 88 0 31 chr13 106773656 106773975 -12970923 - AluSc SINE Alu 0 309 1 302 301 127 60 chr13 106774290 106774622 -12970276 - L1MEc LINE L1 -3889 2507 2154 25 0 0 0 chr13 106774671 106774696 -12970202 + AT_rich Low_complexity Low_complexity 1 25 0 2159 106 0 3 chr13 106775049 106775357 -12969541 - AluSg SINE Alu 0 307 1 389 286 17 0 chr13 106776268 106776387 -12968511 - MER103 DNA DNA -45 121 1 1441 223 106 13 chr13 106777044 106777365 -12967533 + L1MD3 LINE L1 4866 5156 -1008 189 0 0 0 chr13 106777365 106777386 -12967512 + (TC)n Simple_repeat Simple_repeat 2 22 0 1441 223 106 13 chr13 106777386 106777899 -12966999 + L1MD3 LINE L1 5156 5661 -503 446 245 0 0 chr13 106778191 106778285 -12966613 - MER5A DNA MER1_type -73 116 23 472 274 133 30 chr13 106778751 106779014 -12965884 + MLT1I LTR MaLR 102 391 -18 234 298 108 59 chr13 106779844 106780149 -12964749 - L2 LINE L2 0 3313 2994 270 0 0 0 chr13 106780177 106780207 -12964691 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 67 0 0 chr13 106781222 106781267 -12963631 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 106782156 106782177 -12962721 + AT_rich Low_complexity Low_complexity 1 21 0 2269 102 0 0 chr13 106782577 106782872 -12962026 - AluY SINE Alu -10 301 7 185 222 0 0 chr13 106783611 106783647 -12961251 + L2 LINE L2 3215 3250 -22 22 0 0 0 chr13 106783660 106783682 -12961216 + AT_rich Low_complexity Low_complexity 1 22 0 2268 133 30 22 chr13 106783687 106784048 -12960850 - THE1B LTR MaLR 0 364 1 24 53 0 0 chr13 106785821 106785859 -12959039 + AT_rich Low_complexity Low_complexity 1 38 0 1653 130 4 0 chr13 106785861 106786107 -12958791 - L1PA16 LINE L1 -10 6156 5910 240 59 0 0 chr13 106786756 106786790 -12958108 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 10065 26 0 0 chr13 106786796 106788754 -12956144 - L1PA3 LINE L1 0 6155 4198 233 304 78 41 chr13 106791776 106792095 -12952803 + L1ME LINE L1 5566 5896 -225 513 282 131 23 chr13 106793685 106794202 -12950696 + L1ME3 LINE L1 4033 6148 -14 187 286 71 0 chr13 106794862 106794932 -12949966 + L2 LINE L2 2569 2643 -671 185 374 101 45 chr13 106795064 106795243 -12949655 + L2 LINE L2 2973 3161 -111 6098 91 3 0 chr13 106795859 106797305 -12947593 - L1PA11 LINE L1 0 6174 4753 198 0 0 0 chr13 106797323 106797345 -12947553 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 234 94 0 0 chr13 106797376 106797408 -12947490 - U2 snRNA snRNA -152 36 5 928 161 6 19 chr13 106797411 106797572 -12947326 - AluJo SINE Alu -47 265 107 321 298 53 26 chr13 106797573 106797724 -12947174 + MIR SINE MIR 80 234 -28 2140 106 20 0 chr13 106798050 106798351 -12946547 + AluSp SINE Alu 1 307 -6 303 130 29 14 chr13 106798370 106798439 -12946459 + GA-rich Low_complexity Low_complexity 3 72 0 1233 303 160 36 chr13 106798738 106798930 -12945968 - L2 LINE L2 -50 3263 3096 2195 80 0 73 chr13 106798930 106799244 -12945654 - AluSc SINE Alu -18 291 1 1233 303 160 36 chr13 106799244 106800186 -12944712 - L2 LINE L2 -217 3096 1988 4664 124 37 18 chr13 106801067 106801832 -12943066 - MER4E LTR ERV1 0 779 1 956 9 0 0 chr13 106802191 106802301 -12942597 - L1PA2 LINE L1 -1 6154 6045 200 211 0 53 chr13 106803777 106803834 -12941064 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 32 43 0 0 chr13 106804097 106804143 -12940755 + AT_rich Low_complexity Low_complexity 1 46 0 847 74 0 107 chr13 106804275 106804424 -12940474 - AluSg/x SINE Alu -8 304 172 1288 102 0 0 chr13 106804824 106804990 -12939908 - AluY SINE Alu -139 172 7 862 222 6 11 chr13 106805184 106805312 -12939586 - MER20 DNA MER1_type -2 217 89 3131 165 58 51 chr13 106805312 106806034 -12938864 - LTR8A LTR ERV1 0 727 1 862 222 6 11 chr13 106806034 106806085 -12938813 - MER20 DNA MER1_type -130 89 39 346 355 114 18 chr13 106806430 106806650 -12938248 - L1MEd LINE L1 -5361 758 518 225 370 56 28 chr13 106808575 106808683 -12936215 - MIR3 SINE MIR -19 189 79 28 71 0 0 chr13 106809687 106809743 -12935155 + AT_rich Low_complexity Low_complexity 1 56 0 1876 240 73 52 chr13 106809743 106809980 -12934918 - L1M4 LINE L1 -1161 4985 4755 1993 152 0 0 chr13 106809980 106810269 -12934629 - AluSx SINE Alu -23 289 1 1876 240 73 52 chr13 106810269 106810942 -12933956 - L1M4 LINE L1 -1391 4755 4055 1904 180 29 42 chr13 106810942 106811393 -12933505 + MER65A LTR ERV1 1 445 0 921 236 23 72 chr13 106811406 106812006 -12932892 + MER65A-int LTR ERV1 16 640 -4231 517 203 48 96 chr13 106812231 106812418 -12932480 + MER65A-int LTR ERV1 651 828 -4043 1147 243 26 91 chr13 106812484 106813057 -12931841 + LTR57-int LTR ERVL 428 963 -4380 * 3612 183 49 77 chr13 106812729 106813341 -12931557 + MER65A-int LTR ERV1 1522 1892 -2979 2024 132 3 0 chr13 106813341 106813629 -12931269 + AluSq SINE Alu 1 289 -24 3612 183 49 77 chr13 106813629 106814216 -12930682 + MER65A-int LTR ERV1 1892 2494 -2377 677 216 120 76 chr13 106814399 106814901 -12929997 + MER65A-int LTR ERV1 2157 2573 -2550 273 156 0 0 chr13 106815046 106815091 -12929807 + LTR9-int LTR ERV1 2428 2472 -4286 6504 223 71 85 chr13 106815197 106816662 -12928236 + LTR9-int LTR ERV1 2482 3967 -904 2692 26 0 0 chr13 106816662 106816973 -12927925 - AluY SINE Alu 0 311 1 6504 223 71 85 chr13 106816973 106817524 -12927374 + LTR9-int LTR ERV1 3967 3726 -1145 2689 164 74 49 chr13 106817524 106818121 -12926777 + LTR9 LTR ERV1 1 612 0 6504 223 71 85 chr13 106818121 106819252 -12925646 + LTR9-int LTR ERV1 3725 4871 0 1477 206 50 48 chr13 106819252 106819694 -12925204 + MER65A LTR ERV1 1 443 -2 281 264 280 3 chr13 106819697 106820011 -12924887 - L1M4 LINE L1 -2089 4057 3657 666 252 100 69 chr13 106820081 106820575 -12924323 - L1M4c LINE L1 -4444 1771 1294 1679 207 43 5 chr13 106820575 106820951 -12923947 - MLT1B LTR MaLR 0 390 1 666 252 100 69 chr13 106820951 106821435 -12923463 - L1M4c LINE L1 -4921 1294 809 195 125 0 0 chr13 106821559 106821599 -12923299 + (TA)n Simple_repeat Simple_repeat 2 41 0 1671 145 63 7 chr13 106822094 106822363 -12922535 + AluSg SINE Alu 1 284 -26 301 376 8 23 chr13 106822857 106822990 -12921908 - L3 LINE CR1 -124 1453 1323 22 70 0 0 chr13 106823252 106823295 -12921603 + AT_rich Low_complexity Low_complexity 1 43 0 257 59 98 0 chr13 106823298 106823349 -12921549 - L1MC4 LINE L1 0 8042 7987 2198 101 3 3 chr13 106823738 106824035 -12920863 - AluSx SINE Alu -15 297 1 2004 97 37 10 chr13 106824143 106824441 -12920457 - AluSg SINE Alu -4 306 1 206 319 115 9 chr13 106824808 106824921 -12919977 + MIR SINE MIR 59 183 -79 507 353 48 0 chr13 106825877 106826084 -12918814 - MIR SINE MIR 0 262 46 231 188 0 0 chr13 106826498 106826546 -12918352 + (TG)n Simple_repeat Simple_repeat 2 49 0 324 161 0 0 chr13 106827019 106827081 -12917817 + (TG)n Simple_repeat Simple_repeat 2 63 0 212 328 0 0 chr13 106827098 106827162 -12917736 + GA-rich Low_complexity Low_complexity 3 66 0 260 276 53 35 chr13 106827955 106828183 -12916715 - L1M4 LINE L1 -905 5241 5010 1678 256 50 63 chr13 106828302 106829266 -12915632 - L1ME3A LINE L1 -33 6137 5188 693 269 78 30 chr13 106829330 106829702 -12915196 - L1M4 LINE L1 -1221 4925 4536 314 301 45 19 chr13 106829888 106830044 -12914854 - L1M4 LINE L1 -1949 4197 4038 307 276 0 0 chr13 106830165 106830241 -12914657 + MER116 DNA Mariner 4 79 -1 627 301 183 12 chr13 106830910 106831342 -12913556 - L2 LINE L2 -1045 2269 1764 218 184 0 0 chr13 106831487 106831525 -12913373 + CT-rich Low_complexity Low_complexity 3 40 0 180 375 45 11 chr13 106832416 106832504 -12912394 + L2 LINE L2 3174 3264 -8 24 0 0 0 chr13 106833281 106833305 -12911593 + AT_rich Low_complexity Low_complexity 1 24 0 232 237 53 13 chr13 106833570 106833646 -12911252 - L2 LINE L2 -202 3070 2992 282 268 21 41 chr13 106833773 106833870 -12911028 - L2 LINE L2 -524 2790 2696 183 382 49 0 chr13 106833904 106834027 -12910871 - L2 LINE L2 -926 2388 2260 1819 136 6 51 chr13 106834153 106834469 -12910429 + AluSx SINE Alu 2 303 -9 1162 101 47 18 chr13 106834691 106834860 -12910038 + AluSg/x SINE Alu 124 297 -13 1488 122 4 8 chr13 106834961 106835198 -12909700 - L1MA1 LINE L1 -9 6293 6058 388 342 0 0 chr13 106835892 106836006 -12908892 + MIR SINE MIR 31 144 -64 199 170 128 0 chr13 106836594 106836641 -12908257 + MIR3 SINE MIR 150 202 -6 474 363 55 4 chr13 106836929 106837166 -12907732 + MIR SINE MIR 1 249 -13 27 0 0 0 chr13 106837231 106837258 -12907640 + AT_rich Low_complexity Low_complexity 1 27 0 323 146 0 0 chr13 106838685 106838740 -12906158 - L1PA13 LINE L1 -5 6158 6104 402 63 0 0 chr13 106838740 106838803 -12906095 + L1PA13 LINE L1 5985 6047 -116 572 70 30 10 chr13 106838834 106838934 -12905964 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 820 102 79 0 chr13 106839049 106839176 -12905722 + MER85 DNA T2_type 1 137 -2 262 337 118 6 chr13 106839190 106839359 -12905539 - MIR SINE MIR -43 219 32 182 214 54 18 chr13 106839504 106839560 -12905338 - MIR SINE MIR -49 213 156 1642 174 18 11 chr13 106839642 106839957 -12904941 - AluJo SINE Alu 0 317 1 348 268 179 9 chr13 106840166 106840278 -12904620 - L2 LINE L2 -1 3312 3182 223 347 99 36 chr13 106840506 106840898 -12904000 - L2 LINE L2 -338 2976 2560 220 246 31 0 chr13 106841565 106841630 -12903268 - L2 LINE L2 -828 2486 2420 22 0 0 0 chr13 106842362 106842384 -12902514 + AT_rich Low_complexity Low_complexity 1 22 0 239 292 8 25 chr13 106842464 106842584 -12902314 - L1ME4a LINE L1 -40 6081 5964 215 352 28 19 chr13 106842799 106842907 -12901991 + MIR SINE MIR 28 136 -126 195 269 39 0 chr13 106842907 106842959 -12901939 + MIR SINE MIR 100 153 -109 2283 114 21 17 chr13 106844601 106844956 -12899942 + THE1C LTR MaLR 1 419 -13 861 328 155 42 chr13 106845081 106846310 -12898588 + L2 LINE L2 1932 3311 -2 2185 106 7 0 chr13 106846489 106846782 -12898116 + AluSc SINE Alu 2 296 -13 22 0 0 0 chr13 106846782 106846804 -12898094 + AT_rich Low_complexity Low_complexity 1 22 0 1938 167 27 0 chr13 106846893 106847259 -12897639 + L1MB3 LINE L1 5806 6181 -2 1098 291 27 6 chr13 106847279 106847795 -12897103 - L1M4 LINE L1 -2679 3467 2941 215 357 136 19 chr13 106848255 106848409 -12896489 - L2 LINE L2 -25 3247 3076 205 340 117 66 chr13 106848860 106849026 -12895872 - L2 LINE L2 -780 2534 2378 1746 159 150 60 chr13 106849026 106849492 -12895406 + LTR22 LTR ERVK 1 508 -1 205 340 117 66 chr13 106849492 106849899 -12894999 - L2 LINE L2 -936 2378 1932 203 184 0 0 chr13 106850145 106850183 -12894715 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 21 57 0 0 chr13 106850510 106850545 -12894353 + AT_rich Low_complexity Low_complexity 1 35 0 226 277 0 15 chr13 106850555 106850620 -12894278 - MLT1L LTR MaLR -335 280 217 29 28 0 0 chr13 106850847 106850883 -12894015 + AT_rich Low_complexity Low_complexity 1 36 0 259 346 0 39 chr13 106851061 106851165 -12893733 + L2 LINE L2 3169 3268 -4 26 30 0 0 chr13 106852635 106852668 -12892230 + AT_rich Low_complexity Low_complexity 1 33 0 1694 159 3 44 chr13 106852793 106853108 -12891790 + AluSx SINE Alu 1 302 -10 471 63 0 0 chr13 106853250 106853313 -12891585 + (CA)n Simple_repeat Simple_repeat 2 64 0 214 269 21 50 chr13 106854243 106854319 -12890579 + GA-rich Low_complexity Low_complexity 4 76 -64 2883 9 0 0 chr13 106854319 106854637 -12890261 + AluYb8 SINE Alu 1 318 0 214 269 21 50 chr13 106854637 106854701 -12890197 + GA-rich Low_complexity Low_complexity 76 140 0 30 45 0 0 chr13 106858902 106858946 -12885952 + AT_rich Low_complexity Low_complexity 1 44 0 991 199 19 28 chr13 106861113 106861329 -12883569 + MER20 DNA MER1_type 2 215 -4 23 33 0 0 chr13 106862444 106862474 -12882424 + AT_rich Low_complexity Low_complexity 1 30 0 390 240 109 94 chr13 106862840 106863032 -12881866 - MER58C DNA MER1_type -18 197 3 234 105 0 0 chr13 106863450 106863488 -12881410 + (TG)n Simple_repeat Simple_repeat 1 38 0 411 56 0 0 chr13 106865766 106865820 -12879078 + (TG)n Simple_repeat Simple_repeat 1 54 0 180 0 0 0 chr13 106868504 106868524 -12876374 + (CA)n Simple_repeat Simple_repeat 2 21 0 3158 35 28 2 chr13 106869443 106869833 -12875065 + L1PA5 LINE L1 5747 6149 -5 315 0 0 0 chr13 106869833 106869868 -12875030 + (TA)n Simple_repeat Simple_repeat 1 35 0 221 211 18 18 chr13 106870103 106870160 -12874738 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr13 106870422 106870443 -12874455 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 106870819 106870841 -12874057 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr13 106871527 106871563 -12873335 + AT_rich Low_complexity Low_complexity 1 36 0 296 267 0 13 chr13 106871692 106871767 -12873131 - L1ME3 LINE L1 -71 6091 6018 21 0 0 0 chr13 106872916 106872937 -12871961 + AT_rich Low_complexity Low_complexity 1 21 0 796 241 72 7 chr13 106874692 106874924 -12869974 + MIR SINE MIR 15 257 -5 293 315 48 20 chr13 106876193 106876339 -12868559 - Charlie8 DNA MER1_type -2265 152 3 185 159 114 0 chr13 106876946 106876990 -12867908 - L3b LINE CR1 -3 1580 1532 820 240 32 14 chr13 106876990 106877207 -12867691 + MER58A DNA MER1_type 1 221 -3 2171 91 14 0 chr13 106878552 106878848 -12866050 + AluSc SINE Alu 1 300 -9 44 103 0 0 chr13 106879174 106879330 -12865568 + AT_rich Low_complexity Low_complexity 1 156 0 231 88 0 0 chr13 106879362 106879396 -12865502 + (TG)n Simple_repeat Simple_repeat 1 34 0 569 201 181 14 chr13 106879405 106879549 -12865349 + MER5A DNA MER1_type 10 177 -12 633 198 62 19 chr13 106880002 106880164 -12864734 - MIR SINE MIR -4 258 90 274 275 89 52 chr13 106880407 106880629 -12864269 + MLT1H LTR MaLR 258 549 0 248 258 0 0 chr13 106881527 106881589 -12863309 + (TA)n Simple_repeat Simple_repeat 2 63 0 812 261 106 3 chr13 106881665 106881948 -12862950 + MER5C DNA MER1_type 13 324 0 263 297 69 10 chr13 106882117 106882218 -12862680 - MIR SINE MIR -152 110 4 201 222 0 0 chr13 106884192 106884228 -12860670 + (CA)n Simple_repeat Simple_repeat 2 37 0 344 235 9 0 chr13 106884259 106884374 -12860524 + (TA)n Simple_repeat Simple_repeat 1 116 0 336 48 0 0 chr13 106884435 106884477 -12860421 + (TA)n Simple_repeat Simple_repeat 1 42 0 474 344 77 56 chr13 106884600 106885087 -12859811 - L2 LINE L2 0 3272 2762 3410 62 21 73 chr13 106885087 106885604 -12859294 + LTR2B LTR ERV1 1 490 0 474 344 77 56 chr13 106885604 106885945 -12858953 - L2 LINE L2 -510 2762 2429 1949 121 0 0 chr13 106886420 106886685 -12858213 + AluSx SINE Alu 22 286 -26 1132 65 52 0 chr13 106887383 106887537 -12857361 - L1PA8 LINE L1 -166 6006 5845 1114 51 0 0 chr13 106887538 106887676 -12857222 + L1PA8 LINE L1 6020 6157 -15 3540 120 28 30 chr13 106888010 106888611 -12856287 + MER4A LTR ERV1 1 600 0 27 0 0 0 chr13 106888762 106888789 -12856109 + AT_rich Low_complexity Low_complexity 1 27 0 365 304 52 46 chr13 106889728 106889922 -12854976 + L2 LINE L2 3119 3313 0 455 316 0 26 chr13 106890157 106890312 -12854586 - L2 LINE L2 -5 3308 3158 2686 165 18 12 chr13 106890544 106891041 -12853857 - L1MC1 LINE L1 -13 6320 5821 340 318 27 9 chr13 106892611 106892721 -12852177 - L2 LINE L2 -4 3309 3198 553 168 20 0 chr13 106892922 106893023 -12851875 + L1MB2 LINE L1 5369 5471 -700 * 4482 142 45 40 chr13 106893021 106893984 -12850914 + L1PB4 LINE L1 5189 6156 0 3287 179 20 22 chr13 106893978 106894625 -12850273 + L1MB2 LINE L1 5477 6122 -49 * 1073 137 19 42 chr13 106894624 106894836 -12850062 + L1MD1 LINE L1 5761 5967 -275 * 228 87 174 0 chr13 106894834 106894880 -12850018 + L1MB2 LINE L1 6115 6168 -3 * 1748 163 48 31 chr13 106895193 106895550 -12849348 + MLT1A1 LTR MaLR 1 363 -2 2560 146 39 32 chr13 106895998 106896492 -12848406 + L1MC2 LINE L1 5601 6097 -247 1053 157 43 43 chr13 106896637 106896892 -12848006 + L1MC2 LINE L1 6081 6335 -9 623 256 51 9 chr13 106897109 106897324 -12847574 + MER58A DNA MER1_type 1 224 0 210 45 68 0 chr13 106897422 106897466 -12847432 + A-rich Low_complexity Low_complexity 2 48 0 489 301 138 44 chr13 106898170 106898489 -12846409 - MLT1L LTR MaLR -108 507 159 441 50 0 0 chr13 106898781 106898841 -12846057 + (CA)n Simple_repeat Simple_repeat 2 61 0 2243 91 7 0 chr13 106899033 106899330 -12845568 + AluSp SINE Alu 1 299 -14 2027 142 0 0 chr13 106899957 106900252 -12844646 + AluSx SINE Alu 1 295 -17 619 220 53 27 chr13 106900868 106901018 -12843880 + FRAM SINE Alu 1 154 -12 2172 90 0 0 chr13 106901963 106902241 -12842657 + AluSg SINE Alu 1 278 -32 242 29 29 0 chr13 106902250 106902285 -12842613 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 650 164 243 0 chr13 106903784 106903936 -12840962 - MER5A DNA MER1_type 0 189 1 310 223 107 45 chr13 106904306 106904418 -12840480 - MER5A DNA MER1_type -63 126 8 358 275 9 18 chr13 106905149 106905258 -12839640 + MIR3 SINE MIR 78 185 -23 182 267 0 0 chr13 106906048 106906093 -12838805 + L2 LINE L2 2717 2761 -553 182 269 126 25 chr13 106906242 106906361 -12838537 + L2 LINE L2 3081 3211 -102 1163 103 41 0 chr13 106907085 106907279 -12837619 + L1MA5A LINE L1 6092 6293 -4 2158 112 0 3 chr13 106909087 106909397 -12835501 + AluSq SINE Alu 1 309 0 465 229 20 59 chr13 106909608 106909761 -12835137 - MER97b DNA MER1_type? -888 165 19 447 229 79 43 chr13 106910111 106910251 -12834647 - MER20 DNA MER1_type -4 215 71 25 0 0 0 chr13 106911204 106911229 -12833669 + AT_rich Low_complexity Low_complexity 1 25 0 2188 92 7 3 chr13 106911229 106911539 -12833359 - AluSq SINE Alu 0 311 1 1244 191 88 43 chr13 106912112 106912441 -12832457 + MLT1C LTR MaLR 6 349 -118 588 229 17 11 chr13 106912752 106912927 -12831971 - MER5B DNA MER1_type -2 176 1 22 35 0 0 chr13 106913632 106913661 -12831237 + AT_rich Low_complexity Low_complexity 1 29 0 5986 197 20 13 chr13 106913739 106915650 -12829248 + L1MC1 LINE L1 4404 6328 -5 21 57 0 0 chr13 106915951 106915986 -12828912 + AT_rich Low_complexity Low_complexity 1 35 0 282 132 0 0 chr13 106916478 106916531 -12828367 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 403 321 0 22 chr13 106918721 106918855 -12826043 - MIR3 SINE MIR -1 207 77 390 330 98 15 chr13 106918929 106919132 -12825766 + L3 LINE CR1 646 865 -712 285 368 16 0 chr13 106919367 106919492 -12825406 + L2 LINE L2 3183 3309 -4 263 204 0 19 chr13 106919498 106919552 -12825346 + MIR SINE MIR 94 146 -116 393 223 109 98 chr13 106919662 106919918 -12824980 + L3 LINE CR1 1207 1465 -112 541 92 0 4 chr13 106920281 106920498 -12824400 + AluSq SINE Alu 1 301 -12 1452 181 17 28 chr13 106922247 106922535 -12822363 - MLT1A1 LTR MaLR 0 365 81 468 200 10 10 chr13 106922605 106922705 -12822193 + MLT1A1 LTR MaLR 1 100 -265 1851 120 0 8 chr13 106923235 106923494 -12821404 + AluSq SINE Alu 46 302 -11 870 137 25 31 chr13 106924395 106924556 -12820342 - U1 snRNA snRNA -2 163 4 406 329 36 7 chr13 106925491 106925631 -12819267 + MIR SINE MIR 5 148 -114 22 0 0 0 chr13 106925676 106925698 -12819200 + AT_rich Low_complexity Low_complexity 1 22 0 272 300 57 103 chr13 106926435 106926928 -12817970 + L2 LINE L2 2820 3289 -24 230 280 90 95 chr13 106927053 106927242 -12817656 - MIR SINE MIR -55 207 20 5937 85 4 32 chr13 106927889 106928700 -12816198 - L1PA13 LINE L1 0 6163 5376 2316 99 0 0 chr13 106928700 106928993 -12815905 + AluSc SINE Alu 1 293 -16 5937 85 4 32 chr13 106928993 106929610 -12815288 - L1PA13 LINE L1 -787 5376 4743 254 412 0 0 chr13 106930247 106930349 -12814549 - L2 LINE L2 -10 3262 3161 27 49 0 0 chr13 106930696 106930737 -12814161 + AT_rich Low_complexity Low_complexity 1 41 0 24 96 0 0 chr13 106930911 106930984 -12813914 + AT_rich Low_complexity Low_complexity 1 73 0 203 88 29 0 chr13 106931099 106931133 -12813765 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 1592 147 43 108 chr13 106931867 106932282 -12812616 - MLT1B LTR MaLR 0 390 3 1982 125 3 3 chr13 106933391 106933679 -12811219 - AluSq SINE Alu -22 291 4 342 0 0 0 chr13 106934383 106934421 -12810477 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 540 42 0 0 chr13 106934420 106934491 -12810407 + (GA)n Simple_repeat Simple_repeat 2 72 0 25 75 0 0 chr13 106935272 106935325 -12809573 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr13 106935401 106935431 -12809467 + AT_rich Low_complexity Low_complexity 1 30 0 483 53 13 0 chr13 106935923 106935998 -12808900 - L1PA16 LINE L1 0 6166 6091 237 149 43 0 chr13 106935998 106936045 -12808853 + L1PA16 LINE L1 5998 6046 -120 270 370 23 17 chr13 106936154 106936327 -12808571 - MER5A DNA MER1_type -9 180 7 311 271 78 36 chr13 106936624 106936790 -12808108 + MIR SINE MIR 61 233 -29 601 168 40 8 chr13 106938226 106938351 -12806547 + Charlie8 DNA MER1_type 89 217 -2200 3613 169 13 92 chr13 106938383 106939249 -12805649 - L1MA7 LINE L1 -1 6290 5494 200 274 16 0 chr13 106939658 106939720 -12805178 + CT-rich Low_complexity Low_complexity 1 63 0 751 276 10 21 chr13 106940590 106940782 -12804116 - MER58A DNA MER1_type -28 196 7 2000 197 8 3 chr13 106941978 106942358 -12802540 + MLT1B LTR MaLR 2 383 -7 423 0 0 0 chr13 106943246 106943293 -12801605 + (TG)n Simple_repeat Simple_repeat 2 48 0 298 233 22 56 chr13 106946321 106946411 -12798487 - MER58A DNA MER1_type 0 113 27 756 234 55 15 chr13 106946870 106947071 -12797827 - MER58A DNA MER1_type -15 209 1 260 288 0 0 chr13 106947892 106947958 -12796940 + GA-rich Low_complexity Low_complexity 1 66 0 1569 189 33 36 chr13 106948639 106948940 -12795958 - AluJb SINE Alu -12 300 1 721 328 182 18 chr13 106949165 106949732 -12795166 - L2 LINE L2 -788 2526 1867 405 305 118 38 chr13 106949839 106950101 -12794797 + MER20B DNA MER1_type 1 283 -500 305 125 18 0 chr13 106950169 106950225 -12794673 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1426 276 24 8 chr13 106950239 106950707 -12794191 + MER20B DNA MER1_type 308 782 -1 207 189 0 0 chr13 106951461 106951514 -12793384 + (TA)n Simple_repeat Simple_repeat 1 53 0 255 256 30 23 chr13 106951536 106951650 -12793248 + (TA)n Simple_repeat Simple_repeat 2 119 -16 2115 139 3 0 chr13 106951650 106951959 -12792939 + AluSg SINE Alu 1 310 0 255 256 30 23 chr13 106951959 106951977 -12792921 + (TA)n Simple_repeat Simple_repeat 119 135 0 261 238 0 0 chr13 106955142 106955205 -12789693 + Charlie1 DNA MER1_type 2157 2219 -542 334 229 56 112 chr13 106955326 106955480 -12789418 - MIR SINE MIR -65 197 38 22 35 0 0 chr13 106955773 106955802 -12789096 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 106955866 106955895 -12789003 + AT_rich Low_complexity Low_complexity 1 29 0 4632 167 18 20 chr13 106956451 106957348 -12787550 - L1MC1 LINE L1 -14 6319 5425 1003 234 133 42 chr13 106957825 106958122 -12786776 + Charlie4a DNA MER1_type 24 292 -1669 387 0 0 0 chr13 106958122 106958165 -12786733 + (TA)n Simple_repeat Simple_repeat 1 43 0 2263 99 10 13 chr13 106958165 106958477 -12786421 - AluSq SINE Alu -2 311 1 1003 234 133 42 chr13 106958477 106958605 -12786293 + Charlie4a DNA MER1_type 291 489 -19 1133 216 36 86 chr13 106958750 106959134 -12785764 + MLT1A1 LTR MaLR 1 365 0 627 227 156 0 chr13 106959633 106959787 -12785111 + MER5A DNA MER1_type 12 189 0 1624 248 74 7 chr13 106959953 106960384 -12784514 - L1ME1 LINE L1 -31 6135 5676 2213 217 59 9 chr13 106961382 106961959 -12782939 - L1MA4 LINE L1 -124 6176 5571 257 156 39 34 chr13 106962037 106962117 -12782781 + (TA)n Simple_repeat Simple_repeat 1 79 -101 2355 75 3 0 chr13 106962117 106962411 -12782487 - AluSp SINE Alu -18 295 1 257 156 39 34 chr13 106962411 106962509 -12782389 + (TA)n Simple_repeat Simple_repeat 79 180 0 354 312 52 19 chr13 106962608 106962916 -12781982 - L1MEc LINE L1 -4582 1814 1497 3278 217 58 21 chr13 106963261 106964018 -12780880 + MER21B LTR ERV1 19 803 -60 25 31 0 0 chr13 106964352 106964384 -12780514 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chr13 106966603 106966629 -12778269 + (A)n Simple_repeat Simple_repeat 1 26 0 230 181 14 42 chr13 106966744 106966816 -12778082 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 254 294 47 0 chr13 106968443 106968528 -12776370 - MIR SINE MIR -74 188 100 263 335 31 43 chr13 106968594 106968756 -12776142 + MIR SINE MIR 26 191 -65 381 344 0 0 chr13 106969133 106969255 -12775643 + MIR SINE MIR 16 137 -125 1632 224 64 22 chr13 106969306 106969757 -12775141 - MLT1D LTR MaLR -32 473 4 257 279 89 0 chr13 106969758 106969837 -12775061 + MIR SINE MIR 156 241 -21 615 178 0 0 chr13 106969981 106970082 -12774816 - AluJ/FLAM SINE Alu -211 101 1 1105 255 83 46 chr13 106970637 106971119 -12773779 + MLT1D LTR MaLR 5 504 -1 272 228 89 0 chr13 106972308 106972387 -12772511 + L1MC4 LINE L1 6615 6700 -1342 234 136 0 0 chr13 106973938 106973982 -12770916 + (GA)n Simple_repeat Simple_repeat 1 44 0 418 333 157 26 chr13 106975303 106975843 -12769055 - L1M4 LINE L1 -1807 4339 3729 288 91 0 0 chr13 106975868 106975912 -12768986 + (TG)n Simple_repeat Simple_repeat 1 44 0 326 286 200 27 chr13 106976024 106976209 -12768689 + MIR SINE MIR 45 261 -1 3266 83 9 20 chr13 106976456 106976914 -12767984 + MLT2A2 LTR ERVL 1 453 0 21 0 0 0 chr13 106976947 106976968 -12767930 + AT_rich Low_complexity Low_complexity 1 21 0 247 256 192 48 chr13 106977648 106977773 -12767125 + MER5B DNA MER1_type 27 169 -9 749 86 0 0 chr13 106978235 106978340 -12766558 - L1MA2 LINE L1 -3 6301 6197 28 0 0 0 chr13 106979166 106979194 -12765704 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 106980706 106980727 -12764171 + AT_rich Low_complexity Low_complexity 1 21 0 664 231 0 0 chr13 106981548 106981682 -12763216 + MER94 DNA DNA 1 134 0 192 400 9 9 chr13 106985676 106985791 -12759107 + MIR3 SINE MIR 88 202 -6 279 260 188 39 chr13 106985806 106985960 -12758938 + L3b LINE CR1 1314 1490 -93 396 234 18 9 chr13 106987175 106987286 -12757612 + L1MC4 LINE L1 7931 8042 0 312 269 83 21 chr13 106988234 106988379 -12756519 + MIR3 SINE MIR 33 186 -22 1920 121 0 62 chr13 106988586 106988891 -12756007 + AluSx SINE Alu 1 286 -26 463 146 20 13 chr13 106988895 106989046 -12755852 + (TA)n Simple_repeat Simple_repeat 2 153 0 186 87 65 0 chr13 106989074 106989120 -12755778 + (TA)n Simple_repeat Simple_repeat 1 49 0 359 216 52 52 chr13 106989366 106989463 -12755435 + MLT1C LTR MaLR 3 99 -291 180 261 22 0 chr13 106989463 106989509 -12755389 + MIR SINE MIR 189 235 -27 505 413 56 83 chr13 106989516 106989891 -12755007 + MLT1C LTR MaLR 103 467 0 311 250 12 0 chr13 106990093 106990173 -12754725 - MIR SINE MIR -7 255 175 1558 186 13 31 chr13 106991833 106992151 -12752747 - AluJo SINE Alu 0 312 1 358 318 8 16 chr13 106994389 106994518 -12750380 - MER5A DNA MER1_type -3 186 59 189 269 30 45 chr13 106994595 106994662 -12750236 - L2 LINE L2 -695 2619 2554 219 255 59 69 chr13 106995787 106995889 -12749009 + MIR3 SINE MIR 104 204 -4 214 259 0 0 chr13 106996625 106996679 -12748219 + A-rich Low_complexity Low_complexity 3 56 0 258 273 15 0 chr13 106996707 106996776 -12748122 + GA-rich Low_complexity Low_complexity 1 70 0 929 206 0 0 chr13 106998253 106998413 -12746485 + FRAM SINE Alu 1 160 -6 21 0 0 0 chr13 106998540 106998561 -12746337 + AT_rich Low_complexity Low_complexity 1 21 0 232 299 15 0 chr13 106999629 106999696 -12745202 + L3 LINE CR1 1509 1576 -1 262 259 0 12 chr13 107001887 107001968 -12742930 - MER116 DNA Mariner 0 80 1 215 188 14 43 chr13 107002054 107002123 -12742775 + A-rich Low_complexity Low_complexity 6 72 0 29 0 0 0 chr13 107002409 107002438 -12742460 + AT_rich Low_complexity Low_complexity 1 29 0 5242 117 19 9 chr13 107003266 107004073 -12740825 - L1PA16 LINE L1 -10 6156 5342 535 274 104 29 chr13 107004458 107004699 -12740199 + MLT1L LTR MaLR 352 610 -5 180 0 0 0 chr13 107004726 107004746 -12740152 + (T)n Simple_repeat Simple_repeat 1 20 0 2208 109 0 14 chr13 107005784 107006078 -12738820 - AluSq SINE Alu -23 290 1 329 198 63 71 chr13 107006080 107006206 -12738692 + Charlie4 DNA MER1_type 1818 1942 -19 1124 216 36 86 chr13 107006351 107006735 -12738163 + MLT1A1 LTR MaLR 1 365 0 633 227 156 0 chr13 107007234 107007388 -12737510 + MER5A DNA MER1_type 12 189 0 1502 248 74 7 chr13 107007554 107007985 -12736913 - L1ME1 LINE L1 -31 6135 5676 21 0 0 0 chr13 107009449 107009470 -12735428 + AT_rich Low_complexity Low_complexity 1 21 0 692 305 56 42 chr13 107009492 107009869 -12735029 - L2 LINE L2 -48 3265 2884 203 270 146 11 chr13 107010239 107010328 -12734570 - MIR SINE MIR -87 121 21 840 186 93 25 chr13 107011237 107011441 -12733457 - MER20 DNA MER1_type 0 219 2 1755 166 43 63 chr13 107012359 107012425 -12732473 - MLT1B LTR MaLR 0 390 324 2015 119 0 18 chr13 107012425 107012739 -12732159 + AluSc SINE Alu 1 309 0 1755 166 43 63 chr13 107012739 107013069 -12731829 - MLT1B LTR MaLR -66 324 1 203 162 0 0 chr13 107013509 107013546 -12731352 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 278 324 38 0 chr13 107014161 107014266 -12730632 + MIR SINE MIR 127 235 -27 2049 130 55 19 chr13 107014579 107014941 -12729957 - THE1C LTR MaLR 0 375 1 615 164 0 47 chr13 107015303 107015431 -12729467 + L1MB1 LINE L1 6036 6157 -11 339 217 57 38 chr13 107015709 107015725 -12729173 - L1MA10 LINE L1 -3 6331 6316 1077 225 97 15 chr13 107015725 107016116 -12728782 - L1ME2 LINE L1 -9 6155 5733 246 174 0 0 chr13 107016369 107016415 -12728483 + (TA)n Simple_repeat Simple_repeat 1 46 0 1964 156 0 0 chr13 107016574 107016880 -12728018 - AluSx SINE Alu 0 308 3 2323 104 0 9 chr13 107017766 107018082 -12726816 - AluSq SINE Alu 0 313 1 328 217 43 78 chr13 107018672 107018787 -12726111 - L2 LINE L2 -10 3303 3193 252 327 162 22 chr13 107019217 107019489 -12725409 + L3 LINE CR1 1247 1556 -21 294 271 63 50 chr13 107020431 107020652 -12724246 - L1ME4a LINE L1 -4 6117 5894 222 336 121 60 chr13 107020981 107021279 -12723619 + L2 LINE L2 2953 3268 -4 394 329 27 7 chr13 107021597 107021743 -12723155 + MIR3 SINE MIR 40 188 -20 298 119 0 0 chr13 107021743 107021785 -12723113 + AluSc SINE Alu 247 288 -11 252 0 0 0 chr13 107021908 107021936 -12722962 + (CA)n Simple_repeat Simple_repeat 2 29 0 233 303 0 0 chr13 107022445 107022511 -12722387 - L2 LINE L2 -2 3311 3246 1857 175 99 38 chr13 107024138 107024613 -12720285 + MLT1D LTR MaLR 1 504 -1 300 198 187 33 chr13 107025101 107025192 -12719706 + L1ME4a LINE L1 5968 6072 -49 380 276 43 0 chr13 107025522 107025638 -12719260 + MIR SINE MIR 46 166 -96 747 277 178 28 chr13 107028213 107028684 -12716214 - L2 LINE L2 0 3313 2773 670 261 98 36 chr13 107028706 107029012 -12715886 - L2 LINE L2 -691 2623 2299 201 293 61 24 chr13 107029300 107029382 -12715516 - L2 LINE L2 -309 2963 2879 423 322 28 33 chr13 107029789 107030003 -12714895 - MIR SINE MIR -32 230 18 248 342 34 26 chr13 107030639 107030756 -12714142 - L2 LINE L2 -18 3295 3178 1180 290 79 68 chr13 107030871 107031629 -12713269 - L2 LINE L2 -1 3312 2516 243 0 0 0 chr13 107031629 107031656 -12713242 + (TG)n Simple_repeat Simple_repeat 1 27 0 1180 290 79 68 chr13 107031656 107031892 -12713006 - L2 LINE L2 -797 2516 2284 469 313 126 5 chr13 107033217 107033415 -12711483 - MIR SINE MIR -11 251 30 183 42 0 0 chr13 107035712 107035736 -12709162 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1817 162 48 36 chr13 107035873 107036088 -12708810 - MLT1A1 LTR MaLR 0 365 143 2003 137 27 0 chr13 107036088 107036256 -12708642 - AluSx SINE Alu -12 300 119 441 0 0 0 chr13 107036256 107036305 -12708593 + (TG)n Simple_repeat Simple_repeat 2 50 0 2003 137 27 0 chr13 107036305 107036428 -12708470 - AluSx SINE Alu -193 119 1 1817 162 48 36 chr13 107036428 107036570 -12708328 - MLT1A1 LTR MaLR -222 143 4 439 259 9 9 chr13 107037871 107037987 -12706911 + MIR SINE MIR 93 208 -54 589 298 42 50 chr13 107038061 107038299 -12706599 - MIR SINE MIR -12 250 15 483 249 51 41 chr13 107040139 107040336 -12704562 + L1ME3A LINE L1 5962 6160 -10 1168 257 3 56 chr13 107040423 107040762 -12704136 + MER119 DNA MER1_type 1 321 -262 409 191 11 0 chr13 107040762 107040851 -12704047 + L1PA16 LINE L1 5972 6061 -105 327 70 35 18 chr13 107040852 107040909 -12703989 + L1PA16 LINE L1 6098 6155 -11 728 214 105 43 chr13 107040927 107041184 -12703714 + MER119 DNA MER1_type 311 583 0 206 353 98 0 chr13 107041575 107041677 -12703221 + MIR SINE MIR 35 146 -62 262 310 80 0 chr13 107042702 107042802 -12702096 + MER91C DNA MER1_type 1 108 -32 24 0 0 0 chr13 107042844 107042868 -12702030 + AT_rich Low_complexity Low_complexity 1 24 0 578 231 45 0 chr13 107043007 107043141 -12701757 + MIR SINE MIR 47 186 -76 3640 47 0 5 chr13 107043511 107043956 -12700942 + MLT2A1 LTR ERVL 1 443 -1 792 116 0 43 chr13 107044575 107044713 -12700185 + FLAM_C SINE Alu 2 133 0 361 309 110 21 chr13 107045586 107045711 -12699187 + MIR SINE MIR 43 192 -70 1799 182 3 3 chr13 107045711 107046008 -12698890 + AluSx SINE Alu 1 297 -15 361 309 110 21 chr13 107046008 107046073 -12698825 + MIR SINE MIR 192 250 -12 1106 197 120 48 chr13 107046277 107046918 -12697980 - LTR48 LTR ERV1 -4 783 8 199 195 0 0 chr13 107047218 107047259 -12697639 + MIR SINE MIR 101 141 -121 1129 45 0 8 chr13 107047968 107048101 -12696797 - AluY SINE Alu -179 132 1 1276 67 0 0 chr13 107048638 107048787 -12696111 - AluY SINE Alu -162 149 1 207 200 80 53 chr13 107049963 107050038 -12694860 - MER5A DNA MER1_type -84 105 29 1338 200 62 75 chr13 107050341 107050398 -12694500 - MLT1C LTR MaLR -9 458 402 2429 81 0 0 chr13 107050398 107050706 -12694192 + AluSg SINE Alu 1 308 -2 1338 200 62 75 chr13 107050706 107051112 -12693786 - MLT1C LTR MaLR -65 402 1 22 0 0 0 chr13 107051670 107051692 -12693206 + AT_rich Low_complexity Low_complexity 1 22 0 1824 146 7 23 chr13 107051917 107052219 -12692679 - AluSx SINE Alu -15 297 1 229 328 0 0 chr13 107053366 107053433 -12691465 + L2 LINE L2 3200 3266 -6 330 309 50 14 chr13 107054225 107054364 -12690534 - MIR SINE MIR 0 262 119 24 32 0 0 chr13 107054467 107054498 -12690400 + AT_rich Low_complexity Low_complexity 1 31 0 6119 123 19 5 chr13 107054761 107055263 -12689635 + L1PA10 LINE L1 4295 4789 -1379 2407 124 16 8 chr13 107055263 107055635 -12689263 - THE1C LTR MaLR 0 375 1 6119 123 19 5 chr13 107055635 107056969 -12687929 + L1PA10 LINE L1 4789 6150 -18 210 364 109 21 chr13 107057474 107057713 -12687185 - L2 LINE L2 -186 3086 2827 816 206 7 0 chr13 107057734 107057880 -12687018 - MER90 LTR ERV1 0 614 468 * 1382 138 29 25 chr13 107057879 107058118 -12686780 + MER1B DNA MER1_type 24 263 -76 839 284 76 16 chr13 107058124 107058505 -12686393 - MER90 LTR ERV1 -140 474 71 201 235 10 51 chr13 107059133 107059231 -12685667 + T-rich Low_complexity Low_complexity 4 97 0 500 274 178 0 chr13 107059554 107059700 -12685198 - MER5A DNA MER1_type -8 181 10 3959 69 0 4 chr13 107062138 107062645 -12682253 + L1PA7 LINE L1 5649 6153 -1 1714 282 103 50 chr13 107064405 107065182 -12679716 - L2 LINE L2 -1340 1974 1155 216 255 180 48 chr13 107065182 107065322 -12679576 + MIR3 SINE MIR 3 156 -54 244 203 14 58 chr13 107065361 107065430 -12679468 + MIR SINE MIR 144 209 -53 7107 48 3 3 chr13 107065474 107067045 -12677853 + L1PA4 LINE L1 4443 6013 -142 24 53 0 0 chr13 107067997 107068035 -12676863 + AT_rich Low_complexity Low_complexity 1 38 0 448 311 102 34 chr13 107069794 107070029 -12674869 - MIR SINE MIR 0 262 12 489 286 86 40 chr13 107070911 107071260 -12673638 + Charlie7 DNA MER1_type 310 674 -1938 2251 90 10 0 chr13 107072760 107073049 -12671849 + AluSp SINE Alu 1 292 -21 223 268 0 18 chr13 107073249 107073305 -12671593 + L2 LINE L2 3214 3268 -4 25 0 0 0 chr13 107075397 107075422 -12669476 + AT_rich Low_complexity Low_complexity 1 25 0 215 282 153 0 chr13 107076001 107076086 -12668812 + L3 LINE CR1 918 1015 -562 533 266 0 28 chr13 107076108 107076251 -12668647 - MIR SINE MIR 0 262 124 2412 99 0 0 chr13 107076254 107076566 -12668332 + AluSx SINE Alu 1 312 0 281 259 296 16 chr13 107076757 107076946 -12667952 + L3 LINE CR1 1104 1345 -232 * 468 248 8 39 chr13 107076944 107077073 -12667825 + L2 LINE L2 3189 3313 0 325 358 36 15 chr13 107077090 107077227 -12667671 + L3 LINE CR1 1376 1515 -62 315 49 0 0 chr13 107077332 107077373 -12667525 + (CA)n Simple_repeat Simple_repeat 2 42 0 5180 135 42 62 chr13 107078730 107080358 -12664540 + L1MA4 LINE L1 4699 6292 -8 21 0 0 0 chr13 107081039 107081060 -12663838 + AT_rich Low_complexity Low_complexity 1 21 0 1935 171 44 3 chr13 107081337 107081700 -12663198 + MLT1B LTR MaLR 11 388 -2 216 0 0 0 chr13 107082568 107082592 -12662306 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 357 221 0 0 chr13 107084121 107084225 -12660673 + (TA)n Simple_repeat Simple_repeat 1 104 0 1748 266 43 8 chr13 107085880 107086368 -12658530 + MLT1D LTR MaLR 1 505 0 279 319 18 90 chr13 107089268 107089434 -12655464 + MIR3 SINE MIR 38 191 -17 254 270 65 113 chr13 107089665 107089850 -12655048 - MIR SINE MIR -23 239 64 1031 162 12 104 chr13 107090246 107090373 -12654525 + MER46A DNA MER2_type 2 94 -2637 2018 157 0 0 chr13 107090373 107090673 -12654225 - AluSx SINE Alu -7 305 6 1031 162 12 104 chr13 107090673 107090804 -12654094 + MER46A DNA MER2_type 94 236 0 371 21 21 0 chr13 107090818 107090866 -12654032 + (CA)n Simple_repeat Simple_repeat 2 50 0 236 179 0 0 chr13 107091824 107091880 -12653018 + L1MCc LINE L1 1413 1468 -4955 290 187 13 40 chr13 107091920 107091995 -12652903 + L1MCc LINE L1 1704 1776 -5165 317 228 156 49 chr13 107092115 107092462 -12652436 + L1MCc LINE L1 3107 3490 -3451 645 266 77 42 chr13 107092476 107092999 -12651899 + L1MCc LINE L1 3581 4121 -2820 1035 233 44 41 chr13 107093011 107093328 -12651570 + L1ME3A LINE L1 5842 6159 -11 2033 142 0 0 chr13 107093912 107094208 -12650690 + AluSx SINE Alu 5 300 -12 252 317 39 29 chr13 107094278 107094382 -12650516 + MIR SINE MIR 67 171 -91 478 126 175 0 chr13 107094382 107094485 -12650413 - L1MA10 LINE L1 -1 6333 6213 24 0 0 0 chr13 107094735 107094759 -12650139 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 107095724 107095747 -12649151 + (TG)n Simple_repeat Simple_repeat 1 23 0 321 219 21 31 chr13 107096340 107096436 -12648462 - L1PB4 LINE L1 0 6156 6062 246 310 0 11 chr13 107097439 107097526 -12647372 + MLT1L LTR MaLR 110 195 -420 182 372 35 54 chr13 107098754 107099012 -12645886 - L2 LINE L2 -472 2842 2590 210 353 103 32 chr13 107099695 107099851 -12645047 - MIR SINE MIR -9 253 87 2070 129 0 11 chr13 107100392 107100698 -12644200 + AluSq SINE Alu 1 303 0 246 174 0 0 chr13 107101190 107101236 -12643662 + (TA)n Simple_repeat Simple_repeat 1 46 0 2313 93 3 0 chr13 107101237 107101537 -12643361 - AluSq SINE Alu -12 301 1 237 139 0 0 chr13 107102347 107102390 -12642508 + (TG)n Simple_repeat Simple_repeat 1 43 0 1151 42 7 0 chr13 107104361 107104505 -12640393 + L1PA4 LINE L1 6008 6152 -3 30 83 0 0 chr13 107104856 107104928 -12639970 + AT_rich Low_complexity Low_complexity 1 72 0 232 304 158 18 chr13 107105803 107105974 -12638924 - MER117 DNA MER1_type -1 196 2 269 340 115 0 chr13 107106427 107106583 -12638315 + MIR SINE MIR 57 230 -32 369 186 41 36 chr13 107106772 107106895 -12638003 - L1MB8 LINE L1 -2 6182 6062 4433 228 97 90 chr13 107107103 107109372 -12635526 + L1MCa LINE L1 2 2287 -4139 194 31 0 62 chr13 107109856 107109888 -12635010 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 195 162 0 0 chr13 107110062 107110099 -12634799 + (CA)n Simple_repeat Simple_repeat 1 37 0 465 200 82 47 chr13 107111080 107111250 -12633648 + MER96B DNA MER1_type? 2 177 -240 23 0 0 0 chr13 107111857 107111880 -12633018 + AT_rich Low_complexity Low_complexity 1 23 0 267 197 0 49 chr13 107112685 107112746 -12632152 + MER5A DNA MER1_type 132 189 0 303 146 0 0 chr13 107113223 107113278 -12631620 + (GGA)n Simple_repeat Simple_repeat 3 57 0 1529 216 128 10 chr13 107113746 107114130 -12630768 - MLT1D LTR MaLR 0 505 77 2091 109 7 0 chr13 107114804 107115079 -12629819 + AluSq SINE Alu 4 280 -33 358 312 164 28 chr13 107115093 107115802 -12629096 - L2 LINE L2 -1939 1375 571 381 305 67 12 chr13 107116370 107116534 -12628364 + MIR3 SINE MIR 36 208 0 315 0 0 0 chr13 107117578 107117613 -12627285 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 380 141 0 chr13 107117729 107117850 -12627048 - MIR SINE MIR -118 144 7 1533 193 24 3 chr13 107117963 107118295 -12626603 - L1MB7 LINE L1 -8 6176 5838 2276 194 62 16 chr13 107118497 107119487 -12625411 - L1MB7 LINE L1 -365 5819 4787 210 222 0 0 chr13 107119508 107119562 -12625336 + (CATA)n Simple_repeat Simple_repeat 3 56 0 490 177 82 41 chr13 107119578 107119725 -12625173 - L1MB7 LINE L1 -1346 4800 4648 2275 111 30 3 chr13 107119861 107120222 -12624676 + L1MA1 LINE L1 5932 6302 0 22 35 0 0 chr13 107120222 107120251 -12624647 + AT_rich Low_complexity Low_complexity 1 29 0 502 288 135 69 chr13 107120994 107121372 -12623526 + L2 LINE L2 2908 3310 -3 22 0 0 0 chr13 107121484 107121506 -12623392 + AT_rich Low_complexity Low_complexity 1 22 0 802 216 26 32 chr13 107121553 107121743 -12623155 - MER5A DNA MER1_type 0 189 1 471 242 52 26 chr13 107121951 107122104 -12622794 - L1MA9 LINE L1 -37 6275 6119 296 275 117 0 chr13 107122456 107122576 -12622322 + MER94 DNA DNA 1 134 0 188 303 191 0 chr13 107122836 107122925 -12621973 + MIR SINE MIR 68 173 -89 312 275 66 60 chr13 107123915 107123997 -12620901 + L1ME4a LINE L1 5748 5828 -293 2480 49 0 13 chr13 107123997 107124301 -12620597 + AluY SINE Alu 2 301 -10 312 275 66 60 chr13 107124301 107124385 -12620513 + L1ME4a LINE L1 5828 5915 -206 326 321 73 0 chr13 107124409 107124546 -12620352 + L1ME4a LINE L1 5975 6121 0 22 0 0 0 chr13 107127075 107127097 -12617801 + AT_rich Low_complexity Low_complexity 1 22 0 379 287 30 73 chr13 107128595 107128759 -12616139 - L2 LINE L2 -1 3312 3156 36 77 0 0 chr13 107130466 107130544 -12614354 + AT_rich Low_complexity Low_complexity 1 78 0 398 333 95 27 chr13 107130653 107130875 -12614023 - MIR SINE MIR -12 250 14 1436 243 66 7 chr13 107131066 107131490 -12613408 - MLT1C LTR MaLR -7 460 12 187 300 0 0 chr13 107132060 107132110 -12612788 + L3b LINE CR1 1249 1298 -285 183 315 0 0 chr13 107132201 107132255 -12612643 + MIR SINE MIR 99 152 -110 868 234 104 110 chr13 107132776 107133437 -12611461 - MER20B DNA MER1_type 0 783 127 460 194 97 57 chr13 107134186 107134310 -12610588 + L2 LINE L2 3185 3313 0 435 230 178 20 chr13 107134537 107134689 -12610209 - MER20 DNA MER1_type 0 219 44 199 327 18 0 chr13 107135117 107135172 -12609726 - L2 LINE L2 -11 3302 3247 304 309 10 10 chr13 107135430 107135527 -12609371 + MIR SINE MIR 31 127 -81 3316 23 0 0 chr13 107139168 107139554 -12605344 + L1PA4 LINE L1 5765 6150 -5 315 286 91 62 chr13 107139923 107140133 -12604765 + MIR SINE MIR 47 262 0 214 264 115 11 chr13 107140164 107140251 -12604647 - MIR SINE MIR -74 188 93 22 0 0 0 chr13 107140916 107140938 -12603960 + AT_rich Low_complexity Low_complexity 1 22 0 2018 201 8 51 chr13 107141287 107141755 -12603143 + MLT1C LTR MaLR 20 467 0 2781 242 105 51 chr13 107143099 107145118 -12599780 + L1M2a LINE L1 1506 3344 -3823 955 220 0 4 chr13 107145129 107145356 -12599542 + L1M2a LINE L1 3842 4067 -3100 182 322 119 0 chr13 107145391 107145509 -12599389 - MIR SINE MIR -74 188 57 275 340 160 0 chr13 107145588 107145694 -12599204 + L2 LINE L2 3149 3271 -1 283 325 145 30 chr13 107146885 107147085 -12597813 + L2 LINE L2 2836 3058 -214 458 318 0 0 chr13 107147133 107147265 -12597633 + L2 LINE L2 2666 2797 -517 429 286 79 7 chr13 107147277 107147417 -12597481 + Zaphod DNA AcHobo 9 158 -3873 829 224 84 37 chr13 107147418 107147484 -12597414 + MER58A DNA MER1_type 1 62 -2358 2017 128 62 31 chr13 107147484 107147836 -12597062 - THE1B LTR MaLR 0 364 2 829 224 84 37 chr13 107147836 107147983 -12596915 + MER58A DNA MER1_type 62 224 0 * 1579 235 116 38 chr13 107147983 107148767 -12596131 + Zaphod DNA AcHobo 148 993 -3038 1115 274 42 7 chr13 107148762 107149170 -12595728 + Zaphod DNA AcHobo 3595 4016 -15 * 438 321 15 23 chr13 107149227 107149358 -12595540 + L2 LINE L2 3180 3309 -4 2241 112 0 0 chr13 107151290 107151602 -12593296 + AluSx SINE Alu 1 312 0 1329 128 12 74 chr13 107151700 107151943 -12592955 + MER46A DNA MER2_type 9 236 0 2297 78 0 3 chr13 107151959 107152255 -12592643 + AluY SINE Alu 1 295 -16 4148 160 15 19 chr13 107152423 107153200 -12591698 + LTR1 LTR ERV1 12 785 0 651 261 93 31 chr13 107153314 107153801 -12591097 + MLT1G3 LTR MaLR 3 552 -3 1863 146 0 4 chr13 107155070 107155344 -12589554 + AluSx SINE Alu 22 294 -18 24 53 0 0 chr13 107156232 107156270 -12588628 + AT_rich Low_complexity Low_complexity 1 38 0 1216 209 0 2 chr13 107156370 107156666 -12588232 - MER2 DNA MER2_type -1 344 1 21 36 0 0 chr13 107156803 107156831 -12588067 + AT_rich Low_complexity Low_complexity 1 28 0 288 245 0 0 chr13 107157370 107157423 -12587475 - MER2 DNA MER2_type -2 343 291 26 64 0 0 chr13 107157466 107157513 -12587385 + AT_rich Low_complexity Low_complexity 1 47 0 3669 112 14 14 chr13 107159295 107159932 -12584966 + L1M1 LINE L1 2410 3046 -4519 4207 122 17 126 chr13 107160008 107161554 -12583344 + pTR5 LTR ERV1 743 2606 0 439 74 0 0 chr13 107161556 107161610 -12583288 + AluSx SINE Alu 14 67 -246 3283 138 9 1 chr13 107161639 107162394 -12582504 + L1M1 LINE L1 5032 5793 -512 189 0 0 0 chr13 107162656 107162677 -12582221 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 337 367 50 5 chr13 107164293 107164511 -12580387 + HAL1b LINE L1 447 674 -674 297 197 0 150 chr13 107164527 107164654 -12580244 - MER102a DNA MER1_type -2 328 221 1679 134 0 45 chr13 107164719 107164988 -12579910 + AluSx SINE Alu 49 305 -7 1601 168 14 31 chr13 107165732 107166023 -12578875 - AluJo SINE Alu -25 287 2 4037 178 24 0 chr13 107166258 107167055 -12577843 + L1MA8 LINE L1 3598 4413 -1733 6310 132 50 26 chr13 107167076 107168255 -12576643 + Tigger3b DNA MER2_type 25 1231 0 4924 161 36 34 chr13 107168261 107170133 -12574765 + L1MA8 LINE L1 4417 6289 -2 222 323 113 57 chr13 107170477 107170706 -12574192 - L2 LINE L2 -527 2787 2546 631 191 9 9 chr13 107171136 107171283 -12573615 - FLAM_C SINE Alu 0 157 11 1149 301 92 20 chr13 107171291 107172099 -12572799 - L2 LINE L2 -8 3305 2447 2667 10 0 10 chr13 107174385 107174685 -12570213 + AluYa5 SINE Alu 1 297 -14 896 254 73 0 chr13 107174773 107175021 -12569877 + L2 LINE L2 2422 2687 -627 722 155 0 47 chr13 107175031 107175218 -12569680 + MER4E LTR ERV1 1 284 -588 * 1366 232 23 14 chr13 107175216 107175561 -12569337 + MER4D LTR ERV1 547 894 -9 412 311 130 21 chr13 107175618 107176127 -12568771 + L2 LINE L2 2746 3313 0 181 200 0 0 chr13 107176993 107177028 -12567870 - L2 LINE L2 -21 3251 3217 25 51 0 0 chr13 107177133 107177172 -12567726 + AT_rich Low_complexity Low_complexity 1 39 0 2263 42 0 35 chr13 107177966 107178253 -12566645 + AluY SINE Alu 17 293 -18 2284 84 0 44 chr13 107179115 107179436 -12565462 - AluY SINE Alu -4 307 1 221 283 160 9 chr13 107179752 107179858 -12565040 - MIR SINE MIR -71 191 70 293 333 7 27 chr13 107180501 107180651 -12564247 - MIR SINE MIR -1 261 115 285 247 86 0 chr13 107182105 107182186 -12562712 + MIR SINE MIR 73 160 -102 465 284 71 13 chr13 107182641 107182866 -12562032 - MER20B DNA MER1_type -1 782 545 1828 233 139 21 chr13 107182918 107183623 -12561275 + LTR50 LTR ERVL 1 788 -7 619 288 39 31 chr13 107183708 107183965 -12560933 - MER20B DNA MER1_type -258 525 267 306 286 36 9 chr13 107183995 107184107 -12560791 - MER20B DNA MER1_type -616 167 53 5347 148 21 33 chr13 107184892 107185909 -12558989 + Tigger2 DNA MER2_type 7 1010 -1708 10668 143 41 8 chr13 107185922 107187798 -12557100 + Tigger2 DNA MER2_type 782 2718 0 207 0 0 0 chr13 107187817 107187840 -12557058 + (TG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr13 107187840 107187871 -12557027 + AT_rich Low_complexity Low_complexity 1 31 0 340 119 60 0 chr13 107188186 107188253 -12556645 - MER94 DNA DNA -3 131 61 379 348 35 26 chr13 107188325 107188552 -12556346 - MIR SINE MIR 0 262 34 258 316 13 13 chr13 107191426 107191502 -12553396 - MIR SINE MIR -166 96 21 33 97 0 0 chr13 107191557 107191660 -12553238 + AT_rich Low_complexity Low_complexity 1 103 0 299 316 33 72 chr13 107192535 107192655 -12552243 - MIR SINE MIR -38 224 110 2210 104 3 26 chr13 107192655 107192963 -12551935 + AluSx SINE Alu 1 301 -11 299 316 33 72 chr13 107192963 107192994 -12551904 - MIR SINE MIR -152 110 79 2274 115 7 0 chr13 107193545 107193840 -12551058 - AluSx SINE Alu -15 297 1 189 294 198 40 chr13 107195420 107195546 -12549352 + MER5A DNA MER1_type 28 173 -16 384 268 31 67 chr13 107196064 107196258 -12548640 - MIR SINE MIR 0 262 76 1846 156 0 33 chr13 107196338 107196645 -12548253 + AluJb SINE Alu 6 302 -10 28 48 0 0 chr13 107197965 107198007 -12546891 + AT_rich Low_complexity Low_complexity 1 42 0 2139 110 0 14 chr13 107198128 107198419 -12546479 + AluSq SINE Alu 1 287 -26 309 183 0 0 chr13 107198419 107198479 -12546419 + GA-rich Low_complexity Low_complexity 1 60 0 219 265 0 0 chr13 107199389 107199438 -12545460 - MIR SINE MIR -8 254 206 234 317 61 30 chr13 107199571 107199684 -12545214 - L2 LINE L2 -285 2987 2872 200 294 0 24 chr13 107200423 107200508 -12544390 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 1706 118 55 21 chr13 107201063 107201393 -12543505 + L1MA8 LINE L1 5948 6288 -3 2045 121 4 0 chr13 107201453 107201757 -12543141 - AluSx SINE Alu 0 307 3 23 0 0 0 chr13 107201976 107201999 -12542899 + AT_rich Low_complexity Low_complexity 1 23 0 544 288 13 35 chr13 107202256 107202482 -12542416 + MER58A DNA MER1_type 1 221 -3 187 340 94 9 chr13 107203093 107203199 -12541699 + L2 LINE L2 3183 3297 -16 2024 149 0 3 chr13 107203272 107203574 -12541324 + AluJb SINE Alu 1 301 -11 182 114 0 45 chr13 107203613 107203657 -12541241 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 433 264 183 29 chr13 107203895 107204103 -12540795 - MIR SINE MIR 0 262 23 246 235 0 0 chr13 107204380 107204431 -12540467 - L2 LINE L2 0 3272 3222 21 57 0 0 chr13 107204535 107204570 -12540328 + AT_rich Low_complexity Low_complexity 1 35 0 224 308 105 30 chr13 107204571 107204704 -12540194 - MIR SINE MIR -31 231 89 296 329 117 7 chr13 107205403 107205540 -12539358 + MER5B DNA MER1_type 27 178 0 1114 206 40 9 chr13 107205981 107206300 -12538598 - L1M LINE L1 -743 5403 5099 2154 178 48 57 chr13 107206302 107206826 -12538072 + L1MB1 LINE L1 5649 6167 -1 1189 159 17 8 chr13 107207212 107207451 -12537447 - L1P4 LINE L1 -665 5500 5260 921 179 104 9 chr13 107207453 107207665 -12537233 + L1PA16 LINE L1 5930 6161 -5 2080 111 7 0 chr13 107207666 107207972 -12536926 + AluSp SINE Alu 1 308 0 1803 249 79 24 chr13 107207988 107208670 -12536228 + L1MB3 LINE L1 5444 6163 -20 205 322 17 0 chr13 107209287 107209346 -12535552 + MER5B DNA MER1_type 9 68 -110 726 287 162 50 chr13 107209347 107210470 -12534428 + L1MC4a LINE L1 5636 6884 -924 290 253 22 0 chr13 107210941 107211032 -12533866 + L1MC4 LINE L1 7403 7495 -547 359 284 140 20 chr13 107211133 107211475 -12533423 + L1MC4 LINE L1 7532 7914 -128 369 254 70 9 chr13 107211692 107211806 -12533092 - MER5B DNA MER1_type -48 130 10 2393 84 0 0 chr13 107212543 107212841 -12532057 - AluSx SINE Alu -14 298 1 601 250 102 62 chr13 107212845 107213169 -12531729 + Charlie2 DNA MER1_type 2 338 -2524 350 259 49 18 chr13 107213202 107213426 -12531472 + Charlie2 DNA MER1_type 2231 2461 -401 220 327 0 59 chr13 107214336 107214437 -12530461 + L2 LINE L2 1881 1975 -1339 493 330 55 0 chr13 107214581 107214763 -12530135 - MIR SINE MIR 0 262 71 2649 161 32 23 chr13 107217923 107218488 -12526410 - L1MB4 LINE L1 -39 6141 5572 312 309 137 14 chr13 107218604 107218743 -12526155 - MIR SINE MIR -70 192 37 424 324 38 42 chr13 107219082 107219344 -12525554 - MIR SINE MIR -1 261 1 23 0 0 0 chr13 107219455 107219478 -12525420 + AT_rich Low_complexity Low_complexity 1 23 0 590 271 0 14 chr13 107219934 107220074 -12524824 + MIR SINE MIR 47 184 -78 1903 125 54 0 chr13 107220642 107220922 -12523976 + AluSq SINE Alu 1 295 -18 1072 172 0 0 chr13 107220929 107221119 -12523779 + AluSg/x SINE Alu 121 310 0 1561 42 31 0 chr13 107221491 107221684 -12523214 + L1PA5 LINE L1 5955 6153 -1 523 121 0 0 chr13 107221788 107221871 -12523027 - MLT1D LTR MaLR -3 502 420 1131 222 60 52 chr13 107222074 107222493 -12522405 - MLT1D LTR MaLR -83 422 1 337 278 91 43 chr13 107223648 107223835 -12521063 + L1MC/D LINE L1 5391 5586 -773 209 57 29 0 chr13 107223850 107223885 -12521013 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1841 134 34 59 chr13 107224342 107224662 -12520236 - AluSx SINE Alu 0 312 1 234 282 60 34 chr13 107225879 107225996 -12518902 - L2 LINE L2 -1 3312 3193 1532 197 67 0 chr13 107226743 107226859 -12518039 + AluJo SINE Alu 1 108 -204 324 0 0 0 chr13 107226859 107226895 -12518003 + (CA)n Simple_repeat Simple_repeat 1 36 0 1532 197 67 0 chr13 107226895 107227062 -12517836 + AluJo SINE Alu 108 303 -9 2121 134 0 0 chr13 107227498 107227789 -12517109 - AluSx SINE Alu -21 291 1 703 300 25 41 chr13 107228032 107228275 -12516623 - MIR SINE MIR -2 260 22 257 269 13 0 chr13 107229440 107229518 -12515380 - MER94 DNA DNA -35 99 21 233 295 50 79 chr13 107230497 107230636 -12514262 + MIR SINE MIR 3 137 -71 1075 180 0 21 chr13 107230637 107230826 -12514072 + AluSg/x SINE Alu 121 305 -5 353 242 121 104 chr13 107231529 107231711 -12513187 + MIR SINE MIR 73 257 -5 190 351 0 0 chr13 107231724 107231781 -12513117 - L2 LINE L2 -8 3264 3208 232 280 23 83 chr13 107232499 107232631 -12512267 - MLT1K LTR MaLR -283 305 182 929 213 0 0 chr13 107235421 107235585 -12509313 - FRAM SINE Alu -16 160 1 492 271 9 61 chr13 107236480 107236694 -12508204 + MLT1L LTR MaLR 27 229 -386 558 213 222 14 chr13 107236723 107236944 -12507954 + MLT1L LTR MaLR 325 591 -24 276 316 101 14 chr13 107238558 107238697 -12506201 - MIR3 SINE MIR -28 180 30 1672 129 70 4 chr13 107239929 107240200 -12504698 + AluSx SINE Alu 1 289 -23 23 0 0 0 chr13 107240200 107240223 -12504675 + AT_rich Low_complexity Low_complexity 1 23 0 309 254 0 0 chr13 107240444 107240511 -12504387 - MIR SINE MIR 0 262 196 52 64 0 0 chr13 107240544 107240638 -12504260 + AT_rich Low_complexity Low_complexity 1 94 0 276 277 12 0 chr13 107240737 107240820 -12504078 + MER103 DNA DNA 9 92 -74 280 365 70 32 chr13 107241477 107241633 -12503265 + MIR3 SINE MIR 4 165 -43 898 217 43 5 chr13 107242118 107242325 -12502573 + MER20 DNA MER1_type 1 215 -4 2046 120 17 10 chr13 107242899 107243200 -12501698 - AluSq SINE Alu -10 303 1 226 293 98 0 chr13 107243308 107243390 -12501508 - MIR SINE MIR -51 211 122 1843 161 90 0 chr13 107243676 107244030 -12500868 - MLT1B LTR MaLR -4 386 1 267 330 38 57 chr13 107244747 107244956 -12499942 + MIR SINE MIR 1 205 -57 294 200 62 0 chr13 107244998 107245078 -12499820 - L1MB4 LINE L1 -1 6179 6095 288 136 0 0 chr13 107245091 107245150 -12499748 - L1MA4 LINE L1 -282 6018 5960 368 362 13 0 chr13 107245249 107245401 -12499497 - MIR SINE MIR -6 256 103 29309 38 4 3 chr13 107245514 107250084 -12494814 + L1PA4 LINE L1 1581 6153 -2 2324 112 0 3 chr13 107250259 107250571 -12494327 + AluSx SINE Alu 1 311 -1 185 333 74 19 chr13 107250682 107250790 -12494108 - L2 LINE L2 -189 3083 2970 216 370 12 12 chr13 107251053 107251134 -12493764 + L2 LINE L2 3226 3306 -7 248 143 24 0 chr13 107252775 107252817 -12492081 + L2 LINE L2 3174 3216 -56 396 0 0 0 chr13 107252984 107253028 -12491870 + (GAA)n Simple_repeat Simple_repeat 2 45 0 215 261 91 80 chr13 107253036 107253124 -12491774 + L2 LINE L2 3173 3261 -52 21 0 0 0 chr13 107253125 107253146 -12491752 + AT_rich Low_complexity Low_complexity 1 21 0 291 331 32 16 chr13 107254675 107254799 -12490099 - L2 LINE L2 -19 3253 3128 305 253 167 53 chr13 107255403 107255553 -12489345 + MLT1I LTR MaLR 237 403 -6 436 209 136 0 chr13 107256003 107256113 -12488785 - MER3 DNA MER1_type -84 125 1 6339 25 11 0 chr13 107256362 107257138 -12487760 + L1PA4 LINE L1 5385 6168 0 233 210 49 37 chr13 107257139 107257220 -12487678 + L1MB5 LINE L1 5959 6040 -134 1298 141 42 0 chr13 107257247 107257488 -12487410 - L1MB3 LINE L1 -31 6152 5902 186 133 0 0 chr13 107257488 107257518 -12487380 + (A)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr13 107257571 107257600 -12487298 + AT_rich Low_complexity Low_complexity 1 29 0 2732 220 12 12 chr13 107257651 107258252 -12486646 - MER82 DNA MER2_type -52 601 1 1734 91 85 116 chr13 107258327 107258646 -12486252 + AluSx SINE Alu 1 309 -3 1180 155 5 8 chr13 107259604 107259802 -12485096 - AluSx SINE Alu -132 180 1 827 191 25 35 chr13 107261092 107261291 -12483607 + MER3 DNA MER1_type 5 201 -8 250 218 0 23 chr13 107261618 107261705 -12483193 + CT-rich Low_complexity Low_complexity 2 86 0 342 0 0 0 chr13 107263279 107263317 -12481581 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 735 176 0 0 chr13 107263317 107263436 -12481462 - FLAM_C SINE Alu -24 119 1 3985 167 35 23 chr13 107264338 107265192 -12479706 + L1MB1 LINE L1 5184 6051 -117 * 5603 170 20 17 chr13 107265178 107265438 -12479460 + L1PB4 LINE L1 4071 4329 -1827 1707 126 24 99 chr13 107265438 107265772 -12479126 - AluYb8 SINE Alu -9 309 1 5603 170 20 17 chr13 107265772 107265944 -12478954 + L1PB4 LINE L1 4329 4499 -1657 1694 158 26 7 chr13 107265944 107266247 -12478651 + L1PA16 LINE L1 5858 6166 0 5603 170 20 17 chr13 107266247 107267889 -12477009 + L1PB4 LINE L1 4499 6155 -1 1396 157 39 51 chr13 107267900 107268212 -12476686 + L1MA10 LINE L1 6026 6333 -1 2038 176 22 0 chr13 107269704 107270063 -12474835 - L1PB4 LINE L1 -1 6155 5789 21 0 0 0 chr13 107270136 107270157 -12474741 + AT_rich Low_complexity Low_complexity 1 21 0 409 302 272 5 chr13 107270839 107271041 -12473857 - MIR SINE MIR -4 258 3 2174 112 3 0 chr13 107271622 107271918 -12472980 - AluSx SINE Alu -15 297 1 629 277 50 0 chr13 107272337 107272496 -12472402 + MER58D DNA MER1_type 2 168 -218 462 168 0 175 chr13 107272528 107272665 -12472233 + MLT1D LTR MaLR 1 113 -513 990 246 57 8 chr13 107272665 107272929 -12471969 + MLT1C LTR MaLR 1 277 -190 662 160 9 0 chr13 107273083 107273189 -12471709 - MLT1D LTR MaLR -398 107 1 678 166 32 61 chr13 107273190 107273372 -12471526 + MLT1C LTR MaLR 304 463 -4 1310 225 19 88 chr13 107273377 107273800 -12471098 + MLT1D LTR MaLR 112 505 0 835 180 52 21 chr13 107273800 107273993 -12470905 + MER58D DNA MER1_type 188 386 0 28 29 0 0 chr13 107274459 107274494 -12470404 + AT_rich Low_complexity Low_complexity 1 35 0 185 271 0 42 chr13 107274820 107274868 -12470030 - L2 LINE L2 -1 3312 3267 282 330 73 39 chr13 107275039 107275218 -12469680 + MIR SINE MIR 3 187 -75 805 289 113 26 chr13 107275868 107276370 -12468528 + L1ME4a LINE L1 5342 5887 -234 27 0 0 0 chr13 107276382 107276409 -12468489 + AT_rich Low_complexity Low_complexity 1 27 0 184 378 113 11 chr13 107276990 107277175 -12467723 + MIR SINE MIR 6 209 -53 23 33 0 0 chr13 107277280 107277310 -12467588 + AT_rich Low_complexity Low_complexity 1 30 0 185 245 0 19 chr13 107279312 107279365 -12465533 - L2 LINE L2 0 3313 3262 472 293 82 62 chr13 107279649 107279905 -12464993 + MIR SINE MIR 2 262 0 1892 124 0 7 chr13 107279963 107280238 -12464660 + AluSx SINE Alu 1 273 -39 1071 67 24 6 chr13 107280238 107280403 -12464495 + (GAAA)n Simple_repeat Simple_repeat 2 169 0 216 67 0 0 chr13 107280403 107280433 -12464465 + (GA)n Simple_repeat Simple_repeat 1 30 0 2423 153 33 0 chr13 107280970 107281368 -12463530 - MSTB LTR MaLR -15 411 1 261 254 0 60 chr13 107281502 107281569 -12463329 - MLT1K LTR MaLR -351 237 175 1119 198 29 0 chr13 107281643 107281850 -12463048 + MER20 DNA MER1_type 1 213 -6 1889 218 54 62 chr13 107282019 107282597 -12462301 + L1M4 LINE L1 11 583 -5959 934 202 142 45 chr13 107282597 107282934 -12461964 - MLT1A2 LTR MaLR -1 373 4 1801 208 61 46 chr13 107282941 107283416 -12461482 - MLT1A2-int LTR MaLR -6 1729 1248 283 197 45 30 chr13 107283454 107283520 -12461378 - MLT1A2-int LTR MaLR -993 742 676 2746 192 38 74 chr13 107283577 107284393 -12460505 - MLT1A2-int LTR MaLR -491 880 2 761 229 43 61 chr13 107284400 107284680 -12460218 - MLT1A2 LTR MaLR -6 368 94 2176 226 77 51 chr13 107284705 107285471 -12459427 + L1M4 LINE L1 581 1366 -5176 1338 106 30 0 chr13 107285578 107285777 -12459121 - L1PA10 LINE L1 -1 6167 5963 2384 274 27 29 chr13 107285778 107286920 -12457978 + L1M4 LINE L1 1353 2638 -4187 1071 155 104 0 chr13 107286923 107287116 -12457782 + AluJb SINE Alu 88 300 -12 1490 173 17 7 chr13 107287855 107288156 -12456742 - L1MA7 LINE L1 0 6291 5988 331 271 0 24 chr13 107288728 107288813 -12456085 + MIR3 SINE MIR 85 167 -41 436 250 23 11 chr13 107288883 107289059 -12455839 + (TA)n Simple_repeat Simple_repeat 2 179 0 261 268 217 56 chr13 107290654 107290852 -12454046 - MIR SINE MIR -1 261 32 306 196 75 37 chr13 107291326 107291433 -12453465 + MIR SINE MIR 81 191 -71 327 331 13 0 chr13 107291441 107291592 -12453306 + (TA)n Simple_repeat Simple_repeat 2 154 0 2466 53 3 7 chr13 107292135 107292439 -12452459 + AluY SINE Alu 9 311 0 2396 114 91 5 chr13 107293171 107293565 -12451333 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr13 107294890 107294921 -12449977 + AT_rich Low_complexity Low_complexity 1 31 0 1924 109 0 0 chr13 107295840 107296125 -12448773 - AluSg SINE Alu 0 311 27 411 341 39 28 chr13 107296510 107296689 -12448209 + MIR SINE MIR 82 262 0 450 0 0 0 chr13 107297291 107297341 -12447557 + (A)n Simple_repeat Simple_repeat 1 50 0 198 0 0 0 chr13 107297435 107297457 -12447441 + (CA)n Simple_repeat Simple_repeat 2 23 0 1937 139 3 3 chr13 107297705 107297993 -12446905 + AluSx SINE Alu 1 288 -24 2118 146 0 0 chr13 107298306 107298614 -12446284 + AluSg SINE Alu 1 308 -2 198 0 0 0 chr13 107298931 107298953 -12445945 + (A)n Simple_repeat Simple_repeat 1 22 0 249 355 81 16 chr13 107299032 107299156 -12445742 - MIR3 SINE MIR -5 203 72 507 274 142 5 chr13 107300317 107300507 -12444391 - LTR16A LTR ERVL -10 440 225 363 282 80 42 chr13 107300788 107301001 -12443897 - LTR16A1 LTR ERVL -236 221 1 1267 220 73 22 chr13 107301193 107301878 -12443020 + Charlie2 DNA MER1_type 2080 2845 -17 923 174 122 5 chr13 107305994 107306190 -12438708 + MER20 DNA MER1_type 1 219 0 248 290 75 21 chr13 107307583 107307676 -12437222 + MIR SINE MIR 56 153 -109 3538 157 28 8 chr13 107307833 107308483 -12436415 - L1MA6 LINE L1 -5 6295 5633 1492 72 8 38 chr13 107310237 107310472 -12434426 - L1MA3 LINE L1 -1 6304 6077 351 248 150 23 chr13 107312146 107312279 -12432619 + MIR3 SINE MIR 31 157 -51 276 53 0 0 chr13 107312915 107312953 -12431945 + (CA)n Simple_repeat Simple_repeat 1 38 0 220 315 123 34 chr13 107313088 107313234 -12431664 + L2 LINE L2 3154 3312 -1 184 269 75 86 chr13 107313397 107313490 -12431408 + L2 LINE L2 3173 3264 -8 748 314 124 22 chr13 107313765 107314224 -12430674 - L3 LINE CR1 -90 1487 982 651 118 0 0 chr13 107315085 107315178 -12429720 + FRAM SINE Alu 63 155 -21 613 306 12 6 chr13 107317465 107317638 -12427260 + MIR SINE MIR 12 185 -77 198 337 104 52 chr13 107317833 107318314 -12426584 + L2 LINE L2 1993 2498 -816 196 226 52 113 chr13 107318736 107318851 -12426047 + L2 LINE L2 3181 3288 -25 450 377 46 4 chr13 107319876 107320115 -12424783 - MIR SINE MIR -13 249 1 329 322 48 14 chr13 107320583 107320729 -12424169 - MIR SINE MIR -2 260 110 222 277 109 0 chr13 107320891 107321010 -12423888 + L2 LINE L2 2010 2141 -1173 267 367 38 63 chr13 107321233 107321284 -12423614 - L2 LINE L2 -19 3253 3202 1877 185 16 22 chr13 107321284 107321651 -12423247 + MLT1A1 LTR MaLR 1 365 0 267 367 38 63 chr13 107321651 107321757 -12423141 - L2 LINE L2 -70 3202 3100 262 376 36 0 chr13 107322222 107322360 -12422538 - MIR SINE MIR -74 134 8 484 316 71 28 chr13 107323042 107323254 -12421644 + MIR SINE MIR 42 262 0 646 250 140 46 chr13 107324276 107324436 -12420462 + L2 LINE L2 2955 3098 -215 2134 100 14 0 chr13 107324436 107324737 -12420161 - AluSq SINE Alu 0 305 1 646 250 140 46 chr13 107324737 107324903 -12419995 + L2 LINE L2 3098 3313 0 190 292 14 28 chr13 107324903 107324975 -12419923 - MIR3 SINE MIR -34 174 104 987 141 32 59 chr13 107325275 107325495 -12419403 + L1MB3 LINE L1 5916 6129 -54 230 150 0 0 chr13 107325531 107325571 -12419327 + L1MB3 LINE L1 6090 6129 -54 230 150 0 0 chr13 107325569 107325609 -12419289 + L1MB3 LINE L1 6090 6129 -54 518 152 0 0 chr13 107325797 107325889 -12419009 + L1MB3 LINE L1 6090 6181 -2 27 0 0 0 chr13 107325889 107325916 -12418982 + AT_rich Low_complexity Low_complexity 1 27 0 238 337 0 0 chr13 107326708 107326791 -12418107 + MER5A DNA MER1_type 4 86 -103 2399 191 36 46 chr13 107327050 107327610 -12417288 + MER41C LTR ERV1 1 554 0 354 179 179 0 chr13 107330710 107330794 -12414104 - MER5A DNA MER1_type -77 112 14 322 65 0 0 chr13 107331985 107332031 -12412867 + L1MA2 LINE L1 6128 6173 -131 344 258 108 82 chr13 107332210 107332478 -12412420 + L1MC/D LINE L1 5260 5534 -708 1967 172 20 32 chr13 107333633 107334034 -12410864 - MSTD LTR MaLR 0 396 1 755 262 71 73 chr13 107334178 107334602 -12410296 + MLT1J2 LTR MaLR 28 450 0 261 253 21 105 chr13 107334886 107335017 -12409881 + MIR SINE MIR 25 155 -86 210 367 42 25 chr13 107336698 107336818 -12408080 + L2 LINE L2 3151 3272 0 21 0 0 0 chr13 107337114 107337135 -12407763 + AT_rich Low_complexity Low_complexity 1 21 0 202 317 12 24 chr13 107337347 107337429 -12407469 - MIR SINE MIR -94 168 88 5883 115 2 11 chr13 107337926 107338058 -12406840 + L1PA13 LINE L1 4535 4667 -1496 180 0 0 0 chr13 107338058 107338078 -12406820 + (TA)n Simple_repeat Simple_repeat 2 21 0 5883 115 2 11 chr13 107338078 107339557 -12405341 + L1PA13 LINE L1 4667 6152 -11 252 0 0 0 chr13 107340856 107340884 -12404014 + (TG)n Simple_repeat Simple_repeat 2 29 0 580 230 16 0 chr13 107341869 107341995 -12402903 - MER103 DNA DNA -28 138 11 21 36 0 0 chr13 107342188 107342216 -12402682 + AT_rich Low_complexity Low_complexity 1 28 0 243 330 217 9 chr13 107343610 107343725 -12401173 + MIR SINE MIR 53 191 -71 1303 191 69 42 chr13 107343730 107343971 -12400927 + MER2 DNA MER2_type 2 256 -89 6962 60 18 0 chr13 107343971 107345009 -12399889 - L1PA7 LINE L1 0 6154 5117 1303 191 69 42 chr13 107345009 107345102 -12399796 + MER2 DNA MER2_type 256 345 0 1128 173 28 9 chr13 107345919 107346133 -12398765 - MER20 DNA MER1_type -1 218 1 1616 163 59 21 chr13 107347534 107347823 -12397075 + AluJb SINE Alu 2 301 -11 1890 150 65 0 chr13 107348646 107348939 -12395959 - AluSx SINE Alu 0 312 1 2206 127 36 30 chr13 107349226 107349588 -12395310 - THE1B LTR MaLR 0 364 1 186 281 73 37 chr13 107350319 107350401 -12394497 - MIR3 SINE MIR -15 193 109 216 0 0 0 chr13 107350675 107350699 -12394199 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 207 327 99 0 chr13 107350929 107351030 -12393868 + L2 LINE L2 3202 3312 -1 237 250 76 30 chr13 107351044 107351167 -12393731 - MIR SINE MIR -107 101 8 338 245 20 20 chr13 107351368 107351466 -12393432 + GA-rich Low_complexity Low_complexity 3 100 0 21 36 0 0 chr13 107354936 107354964 -12389934 + AT_rich Low_complexity Low_complexity 1 28 0 188 327 20 30 chr13 107355321 107355422 -12389476 - MER5A DNA MER1_type -82 107 8 319 301 115 16 chr13 107355440 107355623 -12389275 + MIR SINE MIR 52 252 -10 292 299 54 20 chr13 107356047 107356273 -12388625 - LTR33 LTR ERVL -237 284 8 241 324 124 28 chr13 107356899 107357044 -12387854 - MIR SINE MIR -56 206 48 21 0 0 0 chr13 107357121 107357142 -12387756 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr13 107357244 107357287 -12387611 + AT_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr13 107357798 107357828 -12387070 + (GA)n Simple_repeat Simple_repeat 1 30 0 251 283 103 21 chr13 107358197 107358430 -12386468 + HAL1b LINE L1 98 349 -999 26 30 0 0 chr13 107358439 107358472 -12386426 + AT_rich Low_complexity Low_complexity 1 33 0 295 308 34 20 chr13 107358635 107358781 -12386117 + HAL1b LINE L1 395 542 -806 313 295 36 0 chr13 107358965 107359104 -12385794 + HAL1b LINE L1 688 831 -517 298 354 30 0 chr13 107359444 107359543 -12385355 + L2 LINE L2 3148 3249 -23 308 226 63 121 chr13 107359556 107359746 -12385152 + L1MC4a LINE L1 5750 5928 -1880 208 284 137 10 chr13 107360690 107360792 -12384106 + L3b LINE CR1 1265 1379 -204 595 233 0 9 chr13 107360833 107360995 -12383903 - FLAM_A SINE Alu 0 161 1 717 219 0 0 chr13 107361030 107361158 -12383740 + FLAM_A SINE Alu 1 128 -5 197 225 90 56 chr13 107361245 107361334 -12383564 + L2 LINE L2 3141 3232 -40 302 333 47 18 chr13 107361594 107361765 -12383133 - L1ME4a LINE L1 -215 5906 5731 329 314 33 0 chr13 107361770 107361891 -12383007 - L1ME4a LINE L1 -435 5686 5562 244 349 60 52 chr13 107362633 107362885 -12382013 + L2 LINE L2 2838 3091 -181 651 322 99 25 chr13 107363105 107363822 -12381076 + L2 LINE L2 2530 3306 -7 573 265 0 110 chr13 107363850 107364069 -12380829 - MIR SINE MIR 0 262 68 1325 167 25 25 chr13 107365040 107365279 -12379619 + AluJb SINE Alu 69 307 -5 272 269 0 15 chr13 107365284 107365351 -12379547 + GA-rich Low_complexity Low_complexity 3 68 0 23 0 0 0 chr13 107365919 107365942 -12378956 + AT_rich Low_complexity Low_complexity 1 23 0 39 0 0 0 chr13 107366195 107366234 -12378664 + AT_rich Low_complexity Low_complexity 1 39 0 456 19 0 0 chr13 107366544 107366597 -12378301 + (TC)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr13 107366635 107366658 -12378240 + AT_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr13 107367608 107367638 -12377260 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chr13 107367642 107367664 -12377234 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 255 61 0 0 chr13 107367663 107367696 -12377202 + (TA)n Simple_repeat Simple_repeat 2 34 0 189 242 232 32 chr13 107369534 107369629 -12375269 - MIR SINE MIR -62 146 33 231 204 0 0 chr13 107369936 107369985 -12374913 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 200 35 35 0 chr13 107370500 107370529 -12374369 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 239 139 0 0 chr13 107370897 107370933 -12373965 - MIR SINE MIR -32 230 195 218 313 22 37 chr13 107373042 107373176 -12371722 + L2 LINE L2 2222 2353 -961 2179 99 44 0 chr13 107373369 107373662 -12371236 - AluSp SINE Alu -7 306 1 1061 287 65 18 chr13 107374360 107374701 -12370197 - MLT1J LTR MaLR -154 357 1 25 0 0 0 chr13 107374919 107374944 -12369954 + AT_rich Low_complexity Low_complexity 1 25 0 459 266 122 53 chr13 107375097 107375285 -12369613 + MIR SINE MIR 54 254 -8 28 29 0 0 chr13 107375810 107375845 -12369053 + AT_rich Low_complexity Low_complexity 1 35 0 296 209 12 0 chr13 107376186 107376272 -12368626 + CT-rich Low_complexity Low_complexity 1 87 0 550 239 126 6 chr13 107377001 107377160 -12367738 - MIR SINE MIR -11 251 74 189 0 0 0 chr13 107378288 107378309 -12366589 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 1147 36 0 0 chr13 107378309 107378448 -12366450 + L1PA5 LINE L1 6015 6153 -1 350 271 0 0 chr13 107379182 107379252 -12365646 + L2 LINE L2 3203 3272 0 22 0 0 0 chr13 107379870 107379892 -12365006 + AT_rich Low_complexity Low_complexity 1 22 0 2136 132 0 0 chr13 107379892 107380188 -12364710 - AluSx SINE Alu -11 301 6 968 263 94 23 chr13 107380683 107380991 -12363907 - MER58B DNA MER1_type -11 330 1 237 393 8 16 chr13 107380991 107381113 -12363785 + L2 LINE L2 3148 3268 -4 387 127 0 0 chr13 107381182 107381245 -12363653 + (TC)n Simple_repeat Simple_repeat 2 64 0 1803 193 20 11 chr13 107381406 107381764 -12363134 + MLT1A1 LTR MaLR 5 365 0 243 0 0 0 chr13 107383587 107383614 -12361284 + (A)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr13 107385775 107385799 -12359099 + AT_rich Low_complexity Low_complexity 1 24 0 514 247 192 6 chr13 107386070 107386252 -12358646 + MIR SINE MIR 37 252 -10 181 345 0 0 chr13 107386396 107386451 -12358447 - MIR3 SINE MIR -12 196 142 204 337 71 2 chr13 107386863 107386993 -12357905 - MIR SINE MIR -58 150 30 2832 173 15 26 chr13 107388319 107388904 -12355994 + L1MC3 LINE L1 7199 7777 -8 1236 171 0 46 chr13 107388916 107389133 -12355765 + AluJo SINE Alu 5 211 -101 27 0 0 0 chr13 107389667 107389694 -12355204 + AT_rich Low_complexity Low_complexity 1 27 0 282 383 40 16 chr13 107391663 107391916 -12352982 + L2 LINE L2 2271 2529 -785 306 319 50 17 chr13 107391936 107392055 -12352843 + L2 LINE L2 3186 3308 -5 405 39 0 0 chr13 107392222 107392273 -12352625 + (CA)n Simple_repeat Simple_repeat 1 51 0 2516 274 220 23 chr13 107392951 107393135 -12351763 + L2 LINE L2 1142 1289 -2024 369 0 0 0 chr13 107393135 107393176 -12351722 + (CA)n Simple_repeat Simple_repeat 1 41 0 2516 274 220 23 chr13 107393176 107394797 -12350101 + L2 LINE L2 1289 3311 -2 304 289 8 96 chr13 107394888 107395044 -12349854 - MIR SINE MIR -66 142 19 234 0 0 0 chr13 107395400 107395426 -12349472 + (CAT)n Simple_repeat Simple_repeat 2 27 0 2233 221 90 12 chr13 107395833 107396331 -12348567 + MLT1F LTR MaLR 6 542 0 264 335 103 52 chr13 107397572 107397766 -12347132 - L2 LINE L2 -40 3232 3029 1383 225 101 71 chr13 107398151 107398736 -12346162 + MLT1E2 LTR MaLR 5 626 0 221 274 0 0 chr13 107398877 107398928 -12345970 - MIR SINE MIR -12 250 200 645 220 27 13 chr13 107398976 107399126 -12345772 - MIR SINE MIR -31 231 80 254 246 37 119 chr13 107399234 107399368 -12345530 - MIR SINE MIR -62 146 24 579 267 93 12 chr13 107399878 107400050 -12344848 + MIR3 SINE MIR 16 201 -7 195 69 0 0 chr13 107400225 107400254 -12344644 + (A)n Simple_repeat Simple_repeat 1 29 0 317 162 15 0 chr13 107400409 107400477 -12344421 + (CA)n Simple_repeat Simple_repeat 2 70 0 247 298 114 9 chr13 107401314 107401428 -12343470 + MIR3 SINE MIR 68 193 -15 351 121 0 0 chr13 107401937 107401995 -12342903 + (TC)n Simple_repeat Simple_repeat 2 59 0 222 37 0 0 chr13 107402338 107402365 -12342533 + (CA)n Simple_repeat Simple_repeat 2 28 0 315 279 66 12 chr13 107403298 107403420 -12341478 + MIR SINE MIR 16 142 -66 201 39 0 0 chr13 107404021 107404047 -12340851 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 238 330 45 0 chr13 107404675 107404763 -12340135 - L2 LINE L2 -239 3033 2942 298 333 62 0 chr13 107405794 107405890 -12339008 - L2 LINE L2 -22 3250 3149 227 200 70 0 chr13 107406208 107406308 -12338590 + (TA)n Simple_repeat Simple_repeat 2 108 0 210 171 0 0 chr13 107406331 107406372 -12338526 + (CATA)n Simple_repeat Simple_repeat 4 44 0 22 0 0 0 chr13 107406893 107406915 -12337983 + AT_rich Low_complexity Low_complexity 1 22 0 554 160 104 0 chr13 107407652 107407777 -12337121 + L1MA7 LINE L1 6153 6290 -1 2380 193 11 2 chr13 107409662 107410124 -12334774 - MLT1C LTR MaLR 0 467 2 210 254 0 90 chr13 107410156 107410223 -12334675 + L2 LINE L2 3253 3313 0 195 162 0 0 chr13 107411168 107411205 -12333693 + (TA)n Simple_repeat Simple_repeat 2 38 0 213 250 0 0 chr13 107411449 107411489 -12333409 + MIR SINE MIR 38 77 -131 210 390 30 18 chr13 107412383 107412547 -12332351 + MIR3 SINE MIR 13 178 -30 447 19 0 0 chr13 107415263 107415315 -12329583 + (TG)n Simple_repeat Simple_repeat 2 53 0 627 259 8 0 chr13 107415587 107415718 -12329180 + MIR SINE MIR 14 145 -117 237 336 40 40 chr13 107415726 107415851 -12329047 - L2 LINE L2 -1 3271 3147 * 254 314 12 0 chr13 107415849 107415935 -12328963 + MIR SINE MIR 170 256 -6 272 271 106 0 chr13 107415979 107416064 -12328834 - MIR SINE MIR -77 185 92 423 256 124 134 chr13 107416736 107417229 -12327669 + L2 LINE L2 2822 3309 -4 880 77 0 77 chr13 107417916 107418111 -12326787 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1746 183 13 13 chr13 107418861 107419173 -12325725 + AluJb SINE Alu 1 312 0 218 56 28 0 chr13 107419202 107419238 -12325660 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 286 298 21 78 chr13 107419801 107419942 -12324956 + L2 LINE L2 3116 3248 -24 2090 272 123 83 chr13 107420209 107421773 -12323125 + L2 LINE L2 30 1656 -1658 595 319 56 30 chr13 107422030 107422334 -12322564 + L2 LINE L2 3002 3313 0 563 272 116 18 chr13 107422352 107422576 -12322322 + MIR SINE MIR 5 250 -12 239 333 89 24 chr13 107423379 107423502 -12321396 + MIR SINE MIR 23 153 -55 263 241 58 0 chr13 107426648 107426735 -12318163 - HAL1 LINE L1 -1210 1297 1206 234 234 0 78 chr13 107426945 107427022 -12317876 + HAL1 LINE L1 231 301 -2206 14606 138 21 7 chr13 107427039 107429423 -12315475 + Tigger1 DNA MER2_type 1 2418 0 886 292 147 60 chr13 107429693 107430115 -12314783 + HAL1 LINE L1 576 960 -1547 2090 130 16 3 chr13 107430115 107430423 -12314475 + AluSx SINE Alu 1 312 0 886 292 147 60 chr13 107430423 107430495 -12314403 + HAL1 LINE L1 960 1024 -1483 752 145 0 0 chr13 107430495 107430619 -12314279 + L1MA1 LINE L1 6179 6302 0 886 292 147 60 chr13 107430619 107431131 -12313767 + HAL1 LINE L1 1024 1670 -837 234 62 0 0 chr13 107431814 107431846 -12313052 + (CA)n Simple_repeat Simple_repeat 2 33 0 189 369 0 0 chr13 107432254 107432319 -12312579 - L2 LINE L2 -1 3271 3207 204 340 117 11 chr13 107432785 107432879 -12312019 - L2 LINE L2 0 3272 3169 210 336 31 4 chr13 107433707 107433821 -12311077 + MIR SINE MIR 22 141 -67 359 294 11 0 chr13 107434892 107434984 -12309914 - L2 LINE L2 -564 2750 2658 192 385 0 12 chr13 107436445 107436528 -12308370 + MIR SINE MIR 49 130 -78 569 335 81 52 chr13 107437069 107437612 -12307286 + L3 LINE CR1 327 885 -692 286 358 50 17 chr13 107437749 107437869 -12307029 - MIR SINE MIR -137 125 2 244 115 0 39 chr13 107437987 107438039 -12306859 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 242 239 86 17 chr13 107438077 107438194 -12306704 + L1ME4a LINE L1 5991 6115 -6 233 333 13 0 chr13 107438374 107438452 -12306446 + L3 LINE CR1 1123 1201 -376 278 281 45 0 chr13 107438587 107438676 -12306222 - L2 LINE L2 -22 3291 3199 373 209 45 73 chr13 107440006 107440116 -12304782 + MER5A DNA MER1_type 1 107 -82 1011 183 14 14 chr13 107440359 107440578 -12304320 + MER20 DNA MER1_type 1 219 0 1399 130 8 42 chr13 107441539 107441777 -12303121 + AluJo SINE Alu 71 300 -12 1725 221 136 18 chr13 107442860 107443367 -12301531 - MLT1F1 LTR MaLR 0 567 1 432 0 0 0 chr13 107443626 107443674 -12301224 + (CA)n Simple_repeat Simple_repeat 2 49 0 2630 30 0 0 chr13 107443914 107444214 -12300684 + AluY SINE Alu 1 300 -11 451 320 201 16 chr13 107444607 107445214 -12299684 + L2 LINE L2 2037 2755 -559 2458 79 3 41 chr13 107445357 107445726 -12299172 + MER4A LTR ERV1 3 357 -307 1459 118 22 22 chr13 107445764 107445992 -12298906 + MER4A LTR ERV1 355 582 -82 561 45 0 0 chr13 107445982 107446048 -12298850 - MER4A LTR ERV1 -481 183 118 * 686 75 21 0 chr13 107446044 107446137 -12298761 + MER4B LTR ERV1 516 610 0 300 352 75 72 chr13 107446215 107446536 -12298362 + L2 LINE L2 2949 3270 -2 23 33 0 0 chr13 107448138 107448168 -12296730 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 107448312 107448333 -12296565 + (TA)n Simple_repeat Simple_repeat 2 22 0 28 29 0 0 chr13 107448833 107448868 -12296030 + AT_rich Low_complexity Low_complexity 1 35 0 790 291 66 9 chr13 107448891 107449118 -12295780 + MIR SINE MIR 12 251 -11 26 74 0 0 chr13 107449486 107449540 -12295358 + AT_rich Low_complexity Low_complexity 1 54 0 3352 85 15 8 chr13 107450257 107450728 -12294170 + L1PA10 LINE L1 5695 6168 0 222 37 0 0 chr13 107452255 107452282 -12292616 + (CA)n Simple_repeat Simple_repeat 1 27 0 202 268 54 18 chr13 107452533 107452589 -12292309 + L3 LINE CR1 1083 1140 -437 180 403 8 8 chr13 107453027 107453146 -12291752 + L2 LINE L2 2191 2309 -1005 497 238 39 55 chr13 107453173 107453354 -12291544 - MLT1J LTR MaLR 0 511 334 213 315 19 46 chr13 107454723 107454831 -12290067 - MIR SINE MIR -109 153 49 353 331 25 16 chr13 107456717 107456838 -12288060 + MIR SINE MIR 32 153 -109 215 250 0 15 chr13 107457112 107457180 -12287718 + (TA)n Simple_repeat Simple_repeat 1 67 0 216 0 0 0 chr13 107457980 107458004 -12286894 + (A)n Simple_repeat Simple_repeat 1 24 0 2538 189 15 27 chr13 107458406 107458955 -12285943 - MLT1F LTR MaLR 0 542 1 303 370 33 5 chr13 107459008 107459159 -12285739 + MIR SINE MIR 6 147 -61 358 273 39 117 chr13 107459209 107459568 -12285330 + MLT1I LTR MaLR 73 403 -6 180 275 75 12 chr13 107459587 107459667 -12285231 + MIR SINE MIR 172 256 -6 219 284 134 22 chr13 107459671 107459805 -12285093 + MIR SINE MIR 104 252 -10 255 305 110 0 chr13 107459933 107460015 -12284883 + L2 LINE L2 3150 3240 -32 596 139 117 67 chr13 107460579 107460759 -12284139 + MER53 DNA DNA 1 189 0 385 357 54 0 chr13 107461152 107461337 -12283561 - MIR SINE MIR -20 242 48 438 268 33 59 chr13 107462087 107462157 -12282741 + L3 LINE CR1 1427 1497 -80 843 236 6 6 chr13 107462157 107462335 -12282563 - MER5B DNA MER1_type 0 178 1 438 268 33 59 chr13 107462335 107462417 -12282481 + L3 LINE CR1 1497 1575 -2 231 349 39 85 chr13 107462616 107462745 -12282153 - L2 LINE L2 -4 3268 3146 477 0 0 0 chr13 107462978 107463031 -12281867 + (TA)n Simple_repeat Simple_repeat 1 53 0 183 333 74 0 chr13 107463798 107463879 -12281019 + L2 LINE L2 3161 3247 -25 2325 122 31 0 chr13 107464592 107464945 -12279953 + THE1B LTR MaLR 1 364 0 1337 178 49 4 chr13 107465799 107466063 -12278835 + L1MC1 LINE L1 6058 6333 0 378 57 0 0 chr13 107466275 107466328 -12278570 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 282 255 0 0 chr13 107467079 107467173 -12277725 + (TA)n Simple_repeat Simple_repeat 2 95 0 189 195 0 0 chr13 107467194 107467235 -12277663 + (CATA)n Simple_repeat Simple_repeat 3 43 0 2090 144 52 3 chr13 107468557 107468905 -12275993 - MER47A DNA MER2_type -1 365 1 1761 213 40 3 chr13 107468950 107469302 -12275596 + MLT1A1 LTR MaLR 1 365 0 4617 172 47 2 chr13 107469589 107470808 -12274090 + L1MB7 LINE L1 4904 6175 -9 22 70 0 0 chr13 107470900 107470943 -12273955 + AT_rich Low_complexity Low_complexity 1 43 0 222 387 17 40 chr13 107472103 107472276 -12272622 + L2 LINE L2 2890 3058 -214 1384 263 65 35 chr13 107474162 107474641 -12270257 + LTR40a LTR ERVL 25 517 -2 956 252 45 26 chr13 107474713 107475026 -12269872 + L1ME2 LINE L1 5835 6153 -11 484 327 102 22 chr13 107475190 107475416 -12269482 + MIR SINE MIR 18 261 -1 326 348 116 31 chr13 107477612 107478034 -12266864 + L2 LINE L2 2807 3264 -8 213 294 29 0 chr13 107478107 107478175 -12266723 - MIR3 SINE MIR -11 197 128 275 282 36 18 chr13 107478464 107478574 -12266324 + MIR3 SINE MIR 91 202 -6 460 273 47 23 chr13 107478667 107478839 -12266059 - MIR3 SINE MIR -3 205 30 1845 171 7 3 chr13 107481650 107481942 -12262956 - AluJb SINE Alu -18 294 2 25 0 0 0 chr13 107481990 107482015 -12262883 + AT_rich Low_complexity Low_complexity 1 25 0 321 130 0 58 chr13 107482015 107482084 -12262814 - L1MA2 LINE L1 0 6304 6240 525 175 167 9 chr13 107482088 107482202 -12262696 - FLAM_A SINE Alu -1 132 1 219 356 52 0 chr13 107482620 107482735 -12262163 + L2 LINE L2 2507 2627 -687 342 0 0 0 chr13 107483920 107483958 -12260940 + (TG)n Simple_repeat Simple_repeat 2 39 0 255 23 68 0 chr13 107484773 107484817 -12260081 + (TA)n Simple_repeat Simple_repeat 1 47 0 347 251 103 126 chr13 107485977 107486471 -12258427 + L1M2 LINE L1 650 1132 -5717 327 146 0 0 chr13 107487955 107488010 -12256888 + (A)n Simple_repeat Simple_repeat 1 55 0 189 121 0 0 chr13 107488505 107488538 -12256360 + (CCCCAG)n Simple_repeat Simple_repeat 3 35 0 23 54 0 0 chr13 107489464 107489501 -12255397 + AT_rich Low_complexity Low_complexity 1 37 0 196 233 47 0 chr13 107490531 107490574 -12254324 - L2 LINE L2 -18 3295 3251 245 267 0 58 chr13 107490814 107490900 -12253998 - L2 LINE L2 0 3272 3192 868 268 78 43 chr13 107491489 107491885 -12253013 + MLT1J LTR MaLR 45 454 -57 1567 198 54 20 chr13 107491887 107492240 -12252658 - MLT1A1 LTR MaLR 0 365 1 5250 136 35 10 chr13 107493146 107493806 -12251092 - L1PA16 LINE L1 -15 6151 5473 2176 113 0 10 chr13 107493806 107494115 -12250783 - AluSc SINE Alu -3 306 1 5250 136 35 10 chr13 107494115 107494492 -12250406 - L1PA16 LINE L1 -693 5473 5107 283 119 0 0 chr13 107494493 107494535 -12250363 + 5S rRNA rRNA 5 46 -75 721 266 131 4 chr13 107494629 107494866 -12250032 + LTR16C LTR ERVL 225 491 0 293 259 98 49 chr13 107496062 107496205 -12248693 + MLT2E LTR ERVL 32 181 -447 233 303 38 76 chr13 107498149 107498281 -12246617 + MER91A DNA MER1_type 49 175 -21 907 292 56 45 chr13 107498760 107499205 -12245693 - LTR33 LTR ERVL -57 464 15 213 200 0 0 chr13 107499242 107499277 -12245621 + (ATG)n Simple_repeat Simple_repeat 2 36 0 473 231 82 30 chr13 107499286 107499420 -12245478 - MIR SINE MIR -50 212 72 332 312 150 47 chr13 107499842 107500076 -12244822 - MIR SINE MIR -3 259 2 2281 253 91 5 chr13 107500476 107501330 -12243568 - L1ME3 LINE L1 -13 6218 5290 1339 258 91 35 chr13 107501485 107502069 -12242829 - L1ME3 LINE L1 -2605 3610 2957 1637 99 0 5 chr13 107502069 107502280 -12242618 + AluY SINE Alu 85 294 -17 1339 258 91 35 chr13 107502280 107502585 -12242313 - L1ME3 LINE L1 -3258 2957 2671 6855 205 35 19 chr13 107502587 107504338 -12240560 - Charlie5 DNA MER1_type 0 2624 844 2063 127 10 3 chr13 107504338 107504630 -12240268 + AluSq SINE Alu 1 294 -19 6855 205 35 19 chr13 107504630 107504674 -12240224 - Charlie5 DNA MER1_type -1780 844 802 780 287 99 25 chr13 107504936 107505761 -12239137 - L1ME3 LINE L1 -4722 1674 789 263 298 127 49 chr13 107506073 107506419 -12238479 - L1ME3 LINE L1 -5678 527 155 6349 174 0 12 chr13 107506694 107508786 -12236112 + L1PA14 LINE L1 4093 6161 0 1782 277 110 32 chr13 107508975 107510357 -12234541 + L1ME3A LINE L1 4185 5762 -408 479 44 11 165 chr13 107510357 107510448 -12234450 + MADE1 DNA Mariner 1 77 -3 1782 277 110 32 chr13 107510448 107510891 -12234007 + L1ME3A LINE L1 5762 6169 -1 349 326 151 5 chr13 107511497 107511715 -12233183 - MIR SINE MIR -1 261 12 1612 188 18 42 chr13 107512291 107512674 -12232224 - MLT1A2 LTR MaLR 0 374 1 353 39 0 19 chr13 107513269 107513321 -12231577 + (TTATA)n Simple_repeat Simple_repeat 2 52 0 864 227 154 15 chr13 107513391 107513721 -12231177 - L1ME3A LINE L1 -5 6165 5790 633 209 0 31 chr13 107513819 107513948 -12230950 - AluJb SINE Alu -187 125 1 310 304 30 25 chr13 107513993 107514230 -12230668 - L1M2c LINE L1 -3678 3110 2873 1280 143 88 11 chr13 107514450 107514722 -12230176 - L1MA8 LINE L1 -5 6286 5994 6431 228 43 81 chr13 107514724 107517166 -12227732 - L1M2c LINE L1 -4346 2442 4 560 126 36 0 chr13 107517169 107517280 -12227618 - L1M2 LINE L1 -860 5440 5326 5901 176 15 2 chr13 107517386 107518572 -12226326 - L1M2 LINE L1 -813 5333 4132 536 278 54 35 chr13 107519318 107519709 -12225189 - HAL1 LINE L1 -886 1857 1263 1938 159 7 0 chr13 107520366 107520661 -12224237 - AluSx SINE Alu -15 297 1 2122 60 3 39 chr13 107521638 107521920 -12222978 + AluY SINE Alu 36 307 -4 385 132 0 0 chr13 107522732 107522808 -12222090 - L1MA8 LINE L1 -7 6284 6209 228 67 0 0 chr13 107523118 107523148 -12221750 + (A)n Simple_repeat Simple_repeat 1 30 0 419 324 17 46 chr13 107523246 107523419 -12221479 - MLT1I LTR MaLR -176 233 66 660 190 107 0 chr13 107524362 107524567 -12220331 - L1M2 LINE L1 -2865 3281 3055 2124 129 0 10 chr13 107524825 107525136 -12219762 + AluSx SINE Alu 1 308 -4 2261 97 0 25 chr13 107525136 107525455 -12219443 + AluSx SINE Alu 1 311 -1 3787 55 38 0 chr13 107525658 107526130 -12218768 - LTR2B LTR ERV1 0 490 1 1618 227 148 51 chr13 107526133 107526953 -12217945 - L1MC5 LINE L1 -439 7522 6624 261 0 0 0 chr13 107526955 107526984 -12217914 + (CA)n Simple_repeat Simple_repeat 1 29 0 3122 223 117 17 chr13 107528134 107529186 -12215712 + L1PB2 LINE L1 7 1163 -5700 13981 194 13 25 chr13 107529203 107530727 -12214171 + L1PB2 LINE L1 1332 2874 -3993 2195 118 10 0 chr13 107530727 107531043 -12213855 + AluSq SINE Alu 1 319 0 13981 194 13 25 chr13 107531043 107535067 -12209831 + L1PB2 LINE L1 2874 6853 -14 327 157 0 0 chr13 107535750 107535801 -12209097 - AluSc SINE Alu -7 292 242 2265 91 3 7 chr13 107535900 107536196 -12208702 - AluSc SINE Alu -14 295 1 2183 101 52 30 chr13 107536268 107536635 -12208263 + THE1C LTR MaLR 1 375 0 2010 181 6 3 chr13 107537310 107537675 -12207223 - MER47A DNA MER2_type 0 366 1 206 398 8 0 chr13 107537680 107537808 -12207090 - L2 LINE L2 -1134 2180 2052 616 336 77 66 chr13 107537808 107538075 -12206823 - L2 LINE L2 -1495 1819 1556 408 101 13 38 chr13 107538075 107538154 -12206744 - L1PA11 LINE L1 -4 6170 6094 616 336 77 66 chr13 107538154 107538625 -12206273 - L2 LINE L2 -1758 1556 1073 22 35 0 0 chr13 107538625 107538654 -12206244 + AT_rich Low_complexity Low_complexity 1 29 0 445 239 162 12 chr13 107538724 107538891 -12206007 + LTR33 LTR ERVL 15 206 -315 4926 76 19 3 chr13 107539016 107540080 -12204818 - L1PA8 LINE L1 -208 5964 4883 290 212 15 0 chr13 107540183 107540249 -12204649 - MER58B DNA MER1_type -6 335 269 394 222 0 12 chr13 107540266 107540347 -12204551 - MER58B DNA MER1_type -251 90 11 371 290 98 38 chr13 107541720 107541902 -12202996 - MIR SINE MIR -52 210 19 4093 157 240 20 chr13 107542088 107543132 -12201766 - MER52C LTR ERV1 0 1278 5 3754 158 13 25 chr13 107543465 107544170 -12200728 + L1MB3 LINE L1 5444 6141 -42 2134 133 0 16 chr13 107544170 107544485 -12200413 + AluSx SINE Alu 1 310 -2 3754 158 13 25 chr13 107544485 107544526 -12200372 + L1MB3 LINE L1 6141 6181 -2 391 106 0 0 chr13 107544536 107544602 -12200296 + L1MB8 LINE L1 6110 6175 -3 1759 179 0 4 chr13 107545761 107546041 -12198857 + AluSx SINE Alu 1 279 -33 270 0 0 0 chr13 107546041 107546071 -12198827 + (CTA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr13 107546071 107546097 -12198801 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2581 146 42 8 chr13 107547563 107548058 -12196840 + L1MB4 LINE L1 5669 6180 0 519 301 58 63 chr13 107548092 107548495 -12196403 + L1MEd LINE L1 939 1428 -1062 2080 144 24 24 chr13 107548495 107548870 -12196028 - THE1C LTR MaLR 0 375 1 519 301 58 63 chr13 107548870 107548885 -12196013 + L1MEd LINE L1 1428 1442 -1048 2049 201 64 100 chr13 107549038 107549846 -12195052 - L1MA10 LINE L1 -10 6324 5546 378 275 106 40 chr13 107550330 107550934 -12193964 - L1M4 LINE L1 -3051 3095 2452 688 195 11 11 chr13 107551279 107551555 -12193343 + MER33 DNA MER1_type 1 276 -87 2143 131 3 0 chr13 107552720 107553025 -12191873 + AluSq SINE Alu 1 306 -7 44 35 0 0 chr13 107553402 107553460 -12191438 + AT_rich Low_complexity Low_complexity 1 58 0 267 286 136 29 chr13 107553632 107553772 -12191126 - MIR SINE MIR -50 212 58 1347 231 26 3 chr13 107554085 107554471 -12190427 + L1M4 LINE L1 4339 4733 -1413 642 191 131 6 chr13 107554478 107554661 -12190237 + L1M4 LINE L1 5089 5294 -852 1120 252 149 48 chr13 107554665 107555181 -12189717 + MLT1E LTR MaLR 26 593 0 1300 259 79 35 chr13 107555186 107556345 -12188553 + L1ME3A LINE L1 4593 5803 -367 2172 129 0 0 chr13 107556366 107556661 -12188237 + AluSx SINE Alu 1 295 -17 2005 156 45 30 chr13 107556798 107557342 -12187556 + MLT2A2 LTR ERVL 1 554 0 300 295 36 45 chr13 107557343 107557455 -12187443 + L1ME3A LINE L1 6060 6170 0 21 36 0 0 chr13 107559832 107559860 -12185038 + AT_rich Low_complexity Low_complexity 1 28 0 288 278 52 31 chr13 107559881 107559978 -12184920 - L2 LINE L2 -27 3286 3188 1788 139 78 33 chr13 107560061 107560420 -12184478 + THE1C LTR MaLR 1 375 0 1208 238 25 29 chr13 107560625 107561013 -12183885 - MLT2C1 LTR ERVL -8 456 1 211 301 12 72 chr13 107561510 107561593 -12183305 + L2 LINE L2 3102 3179 -93 1612 122 38 8 chr13 107561925 107562187 -12182711 + L1PB1 LINE L1 5882 6151 0 303 94 75 0 chr13 107562575 107562628 -12182270 - L1ME4a LINE L1 0 6121 6065 290 230 11 35 chr13 107563569 107563656 -12181242 - MLT1E2 LTR MaLR -541 85 1 410 221 11 11 chr13 107563777 107563872 -12181026 - MIR SINE MIR -6 256 162 1727 208 6 8 chr13 107564327 107564693 -12180205 + MLT1A1 LTR MaLR 1 365 0 304 316 80 32 chr13 107564719 107565032 -12179866 - L1ME3 LINE L1 -211 5951 5624 1777 146 167 32 chr13 107565042 107565419 -12179479 - MSTA LTR MaLR 0 428 1 7713 141 7 28 chr13 107565419 107567009 -12177889 - MSTA-int LTR MaLR 0 1580 5 1452 129 291 12 chr13 107567016 107567349 -12177549 - MSTA LTR MaLR -2 426 1 1581 224 0 3 chr13 107567412 107567702 -12177196 + AluJb SINE Alu 1 289 -23 338 290 28 13 chr13 107567768 107567955 -12176943 - L1ME3 LINE L1 -649 5515 5327 2629 194 32 2 chr13 107568046 107568547 -12176351 + L1MA3 LINE L1 13 528 -7037 * 7441 173 19 3 chr13 107568535 107570843 -12174055 + L1MA3 LINE L1 5376 7724 0 3716 172 39 19 chr13 107570975 107571765 -12173133 - L1MD2 LINE L1 -8 6351 5546 21 0 0 0 chr13 107571794 107571815 -12173083 + AT_rich Low_complexity Low_complexity 1 21 0 232 344 38 15 chr13 107571919 107572050 -12172848 - L1MEd LINE L1 -5424 695 562 235 256 37 12 chr13 107572672 107572754 -12172144 - L1MC/D LINE L1 -2000 5808 5725 337 318 53 78 chr13 107573770 107573936 -12170962 + MIR SINE MIR 20 180 -82 728 207 11 45 chr13 107573936 107574115 -12170783 + MER5B DNA MER1_type 2 174 -4 337 318 53 78 chr13 107574115 107574193 -12170705 + MIR SINE MIR 180 258 -4 2299 186 69 12 chr13 107575407 107575897 -12169001 - LTR53 LTR ERVL 0 519 2 219 397 0 0 chr13 107575999 107576062 -12168836 + L2 LINE L2 3139 3201 -71 23 54 0 0 chr13 107576072 107576109 -12168789 + AT_rich Low_complexity Low_complexity 1 37 0 397 308 49 32 chr13 107576943 107577128 -12167770 + MIR SINE MIR 35 222 -40 769 284 25 55 chr13 107577353 107577419 -12167479 + MIR SINE MIR 10 76 -186 1636 132 132 15 chr13 107577419 107577753 -12167145 + THE1C LTR MaLR 1 373 -2 769 284 25 55 chr13 107577753 107577945 -12166953 + MIR SINE MIR 76 262 0 2646 101 6 8 chr13 107578073 107578438 -12166460 + THE1B LTR MaLR 1 364 0 10577 95 17 68 chr13 107578438 107580104 -12164794 + THE1B-int LTR MaLR 1 1580 0 2627 118 0 0 chr13 107580104 107580468 -12164430 + THE1B LTR MaLR 1 364 0 440 331 45 84 chr13 107580591 107581262 -12163636 + L2 LINE L2 2614 3255 -17 811 281 56 73 chr13 107581695 107582215 -12162683 - MLT1J LTR MaLR 0 511 1 431 118 146 64 chr13 107582329 107582439 -12162459 + MLT1B LTR MaLR 1 119 -271 888 206 71 34 chr13 107582749 107583016 -12161882 + MLT1B LTR MaLR 114 390 0 358 279 165 60 chr13 107583136 107583487 -12161411 + LTR33A LTR ERVL 132 519 -4 552 321 114 31 chr13 107583740 107584098 -12160800 + L1M4 LINE L1 4795 5182 -964 714 177 13 0 chr13 107584399 107584557 -12160341 + L1MC3 LINE L1 6899 7058 -727 286 145 14 58 chr13 107584577 107584646 -12160252 + MLT1F1 LTR MaLR 37 102 -465 1316 201 17 10 chr13 107584646 107584934 -12159964 + L1MC3 LINE L1 7166 7455 -330 926 190 105 63 chr13 107584936 107585268 -12159630 + MLT2D LTR ERVL 1 346 -118 283 240 10 10 chr13 107585404 107585504 -12159394 + GA-rich Low_complexity Low_complexity 4 103 0 244 206 124 82 chr13 107586343 107586440 -12158458 - MIR SINE MIR -113 149 49 207 263 18 18 chr13 107587058 107587115 -12157783 + MIR3 SINE MIR 118 174 -34 212 186 17 0 chr13 107587975 107588034 -12156864 + (TA)n Simple_repeat Simple_repeat 2 61 0 223 239 30 45 chr13 107589494 107589561 -12155337 + MIR SINE MIR 180 245 -17 2241 118 0 0 chr13 107589786 107590083 -12154815 + AluSx SINE Alu 1 297 -15 27 29 0 0 chr13 107590083 107590117 -12154781 + AT_rich Low_complexity Low_complexity 1 34 0 440 91 0 0 chr13 107590980 107591046 -12153852 + Alu SINE Alu 243 308 -3 1866 105 0 12 chr13 107591106 107591364 -12153534 + AluSc SINE Alu 44 298 -11 227 295 188 43 chr13 107591528 107591735 -12153163 - L2 LINE L2 -181 3091 2855 276 359 35 21 chr13 107591883 107592028 -12152870 + MIR3 SINE MIR 34 180 -28 18283 51 0 5 chr13 107592587 107594965 -12149933 + L1PA3 LINE L1 7 2372 -3774 15597 29 1 0 chr13 107595069 107597689 -12147209 + L1PA3 LINE L1 3531 6152 -3 21 0 0 0 chr13 107597689 107597710 -12147188 + AT_rich Low_complexity Low_complexity 1 21 0 1370 188 9 36 chr13 107598622 107598958 -12145940 + L1MA10 LINE L1 6008 6334 0 300 196 157 78 chr13 107599083 107599185 -12145713 - L2 LINE L2 0 3272 3163 245 272 25 25 chr13 107599856 107599937 -12144961 - MIR SINE MIR -4 258 178 * 486 338 75 33 chr13 107599923 107600228 -12144670 + L2 LINE L2 2215 2532 -782 306 345 50 55 chr13 107600321 107600521 -12144377 + L2 LINE L2 2885 3083 -189 2010 105 0 0 chr13 107600991 107601248 -12143650 + AluSx SINE Alu 37 293 -19 225 357 83 13 chr13 107601671 107601828 -12143070 - MIR SINE MIR -3 259 92 616 291 82 10 chr13 107601969 107602165 -12142733 + MIR SINE MIR 23 232 -30 1976 110 0 90 chr13 107602488 107602593 -12142305 - L1PB3 LINE L1 -2 6152 6039 7494 90 6 22 chr13 107602593 107603682 -12141216 + MER11C LTR ERVK 1 1071 0 1976 110 0 90 chr13 107603682 107603932 -12140966 - L1PB3 LINE L1 -115 6039 5829 21 0 0 0 chr13 107604140 107604161 -12140737 + AT_rich Low_complexity Low_complexity 1 21 0 303 96 0 0 chr13 107604206 107604258 -12140640 + (A)n Simple_repeat Simple_repeat 1 52 0 2282 212 31 0 chr13 107604820 107605310 -12139588 - MLT1D LTR MaLR 0 505 1 255 329 0 12 chr13 107606582 107606664 -12138234 - MER5A DNA MER1_type -98 91 11 825 197 10 66 chr13 107607152 107607350 -12137548 + MER5A DNA MER1_type 2 188 -1 505 307 68 6 chr13 107607637 107607813 -12137085 - MIR SINE MIR -56 206 20 680 174 89 94 chr13 107607866 107608079 -12136819 - MER20 DNA MER1_type 0 219 8 979 209 16 0 chr13 107608096 107608278 -12136620 - MER5A DNA MER1_type -1 188 4 4103 138 13 10 chr13 107608537 107609790 -12135108 - L1MA8 LINE L1 -365 5926 4670 329 241 283 0 chr13 107610061 107610206 -12134692 + MER5A DNA MER1_type 4 189 0 1789 153 7 42 chr13 107610523 107610668 -12134230 + AluJo SINE Alu 1 131 -181 2557 37 0 13 chr13 107610668 107610968 -12133930 + AluY SINE Alu 1 296 -15 1789 153 7 42 chr13 107610968 107611130 -12133768 + AluJo SINE Alu 131 297 -15 532 217 14 7 chr13 107611297 107611440 -12133458 + L1PB1 LINE L1 6 149 -6714 593 113 0 0 chr13 107611440 107611520 -12133378 + AluSp/q SINE Alu 202 281 -32 324 0 0 0 chr13 107611523 107611559 -12133339 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 13577 190 26 8 chr13 107611560 107616388 -12128510 + L1PB1 LINE L1 1620 6565 -302 198 0 0 0 chr13 107617404 107617426 -12127472 + (A)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr13 107617598 107617618 -12127280 + (A)n Simple_repeat Simple_repeat 1 20 0 232 361 98 16 chr13 107618133 107618255 -12126643 - L2 LINE L2 -5 3267 3136 268 187 13 13 chr13 107619321 107619396 -12125502 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 361 241 141 31 chr13 107620000 107620191 -12124707 + MLT1L LTR MaLR 394 605 -10 496 320 91 30 chr13 107620580 107620706 -12124192 - MIR SINE MIR -14 248 131 2533 52 0 7 chr13 107620706 107621013 -12123885 + AluY SINE Alu 1 305 -6 496 320 91 30 chr13 107621013 107621117 -12123781 - MIR SINE MIR -131 131 4 21 0 0 0 chr13 107621135 107621156 -12123742 + AT_rich Low_complexity Low_complexity 1 21 0 1667 195 120 11 chr13 107621172 107621623 -12123275 - MLT1D LTR MaLR -5 500 1 472 246 18 0 chr13 107622103 107622217 -12122681 - L2 LINE L2 -498 2816 2701 1960 112 36 46 chr13 107622540 107622845 -12122053 + AluJb SINE Alu 1 302 -10 848 276 16 0 chr13 107623719 107623962 -12120936 + L1MC4a LINE L1 5523 5769 -2039 801 181 19 0 chr13 107623989 107624144 -12120754 + MER20 DNA MER1_type 62 219 0 344 244 55 37 chr13 107624155 107624319 -12120579 + L1MC4a LINE L1 5782 5948 -1860 438 134 10 21 chr13 107624319 107624416 -12120482 + GA-rich Low_complexity Low_complexity 1 96 0 217 375 62 27 chr13 107624649 107624761 -12120137 + L2 LINE L2 3153 3268 -4 775 153 0 0 chr13 107624764 107624882 -12120016 + FLAM_C SINE Alu 1 118 -25 201 39 0 0 chr13 107624882 107624908 -12119990 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 183 242 121 30 chr13 107624962 107625061 -12119837 - L2 LINE L2 -46 3267 3160 230 341 136 23 chr13 107626276 107626408 -12118490 + MIR SINE MIR 2 148 -114 506 130 48 7 chr13 107626458 107626727 -12118171 + (TA)n Simple_repeat Simple_repeat 1 280 0 1977 137 52 25 chr13 107626875 107627240 -12117658 + THE1C LTR MaLR 1 375 0 463 250 13 26 chr13 107627310 107627462 -12117436 + LTR33 LTR ERVL 371 520 -1 253 257 62 69 chr13 107627544 107627688 -12117210 - L2 LINE L2 -2871 443 301 277 200 0 0 chr13 107627768 107627823 -12117075 + MLT-int LTR MaLR 691 745 -990 1840 193 17 33 chr13 107627988 107628052 -12116846 + MLT1A2-int LTR MaLR 1319 1383 -352 2364 99 0 3 chr13 107628052 107628365 -12116533 + AluSx SINE Alu 1 312 0 1840 193 17 33 chr13 107628365 107628719 -12116179 + MLT1A2-int LTR MaLR 1383 1730 -5 1409 221 29 18 chr13 107628776 107629116 -12115782 + MLT1A2 LTR MaLR 31 374 0 313 348 35 43 chr13 107629118 107629348 -12115550 - L2 LINE L2 -3009 305 78 198 365 25 19 chr13 107629539 107629698 -12115200 - L2 LINE L2 -1618 1696 1537 341 93 19 0 chr13 107631067 107631121 -12113777 + (TG)n Simple_repeat Simple_repeat 1 55 0 391 293 37 37 chr13 107631370 107631534 -12113364 + MIR SINE MIR 5 168 -94 291 256 106 6 chr13 107631669 107631829 -12113069 + L1ME4a LINE L1 5713 5888 -233 1996 144 0 10 chr13 107631979 107632285 -12112613 + AluSx SINE Alu 2 304 -8 245 342 25 0 chr13 107632964 107633043 -12111855 - L2 LINE L2 -1 3271 3191 456 286 34 0 chr13 107633207 107633354 -12111544 + LTR67 LTR ERVL 36 187 -370 1140 192 59 7 chr13 107634512 107634819 -12110079 - MER33 DNA MER1_type 0 324 2 1864 179 41 61 chr13 107636444 107636922 -12107976 + L1MB8 LINE L1 5089 5575 -603 2360 108 3 0 chr13 107636922 107637228 -12107670 + AluSq SINE Alu 1 307 -6 1864 179 41 61 chr13 107637228 107637291 -12107607 + L1MB8 LINE L1 5575 5638 -540 894 54 15 8 chr13 107637291 107637421 -12107477 + (TAGA)n Simple_repeat Simple_repeat 1 131 0 1864 179 41 61 chr13 107637421 107637940 -12106958 + L1MB8 LINE L1 5638 6076 -102 1026 137 22 0 chr13 107638397 107638580 -12106318 - L1MA8 LINE L1 -2 6289 6103 291 191 0 0 chr13 107639065 107639128 -12105770 + (TG)n Simple_repeat Simple_repeat 1 63 0 289 389 37 71 chr13 107639363 107639715 -12105183 - L2 LINE L2 0 3272 2933 459 320 59 57 chr13 107639802 107640190 -12104708 - L2 LINE L2 -507 2807 2419 1393 181 26 19 chr13 107640688 107640953 -12103945 - AluJo SINE Alu -4 308 42 1006 65 7 22 chr13 107641867 107642006 -12102892 - L1PA8 LINE L1 -7 6165 6029 692 105 73 0 chr13 107642190 107642314 -12102584 - L1 LINE L1 -1756 4390 4258 492 180 0 3 chr13 107642685 107642778 -12102120 - L1M4 LINE L1 -870 5978 5886 1472 71 15 0 chr13 107642778 107642974 -12101924 + L1PA6 LINE L1 5954 6154 0 492 180 0 3 chr13 107642974 107642988 -12101910 - L1M4 LINE L1 -962 5886 5873 * 5653 182 10 7 chr13 107642981 107644313 -12100585 - L1P5 LINE L1 -692 5462 4126 4933 187 37 3 chr13 107644319 107645801 -12099097 - L1M4 LINE L1 -2818 4030 2498 2546 190 41 7 chr13 107645801 107646360 -12098538 - Charlie1 DNA MER1_type -308 2453 1876 395 260 48 0 chr13 107646388 107646492 -12098406 - Charlie1 DNA MER1_type -2651 110 2 328 300 195 5 chr13 107647237 107647447 -12097451 - L1ME4a LINE L1 -176 5945 5696 214 360 40 60 chr13 107647661 107647761 -12097137 + MER91A DNA MER1_type 32 129 -67 720 282 111 19 chr13 107648711 107649027 -12095871 - LTR33 LTR ERVL -176 345 1 2277 114 0 7 chr13 107651336 107651644 -12093254 + AluSx SINE Alu 1 306 -6 2368 95 0 0 chr13 107651966 107652261 -12092637 + AluSx SINE Alu 1 295 -17 2320 101 0 16 chr13 107654345 107654663 -12090235 - AluSq SINE Alu 0 313 1 305 295 47 47 chr13 107656579 107656728 -12088170 + MIR SINE MIR 41 189 -73 211 302 63 0 chr13 107656791 107656854 -12088044 + L2 LINE L2 3206 3272 0 5646 149 22 5 chr13 107656987 107658410 -12086488 - L1MA7 LINE L1 -5 6286 4722 1759 159 0 53 chr13 107658468 107658788 -12086110 - AluJo SINE Alu -9 303 1 249 208 0 0 chr13 107658879 107658927 -12085971 + MLT1L LTR MaLR 1 48 -567 381 256 91 102 chr13 107659075 107659250 -12085648 + MLT1J LTR MaLR 235 408 -103 2044 134 0 3 chr13 107659250 107659560 -12085338 - AluJb SINE Alu 0 309 1 381 256 91 102 chr13 107659560 107659657 -12085241 + MLT1J LTR MaLR 408 505 -6 1568 120 11 15 chr13 107659952 107660226 -12084672 - L1MA8 LINE L1 -1 6290 6018 2201 121 0 0 chr13 107660279 107660576 -12084322 - AluSx SINE Alu -15 297 1 338 297 62 16 chr13 107660895 107661023 -12083875 + MIR SINE MIR 27 160 -102 300 328 134 10 chr13 107661060 107661261 -12083637 + L1MC/D LINE L1 5320 5545 -2240 1584 180 6 57 chr13 107661768 107662084 -12082814 + AluJo SINE Alu 1 300 -12 23 42 0 21 chr13 107662186 107662213 -12082685 + AT_rich Low_complexity Low_complexity 1 28 -19 1716 147 31 14 chr13 107662213 107662506 -12082392 + AluJo SINE Alu 1 298 -14 23 42 0 21 chr13 107662506 107662526 -12082372 + AT_rich Low_complexity Low_complexity 28 47 0 1398 121 43 10 chr13 107662643 107662850 -12082048 - AluSg/x SINE Alu -30 279 66 919 249 25 45 chr13 107663832 107664077 -12080821 - MIR SINE MIR -10 252 13 241 313 24 0 chr13 107664090 107664173 -12080725 - L3 LINE CR1 -15 1562 1478 283 200 0 0 chr13 107664671 107664731 -12080167 + L1 LINE L1 4322 4381 -1765 948 172 53 44 chr13 107664737 107664964 -12079934 - MER82 DNA MER2_type -225 428 200 1523 139 53 23 chr13 107665062 107665363 -12079535 - THE1C LTR MaLR 0 375 66 430 37 0 0 chr13 107665534 107665588 -12079310 - THE1C LTR MaLR -374 54 1 610 246 0 21 chr13 107666467 107666609 -12078289 - MER82 DNA MER2_type -510 143 5 536 292 103 17 chr13 107666629 107666920 -12077978 + MLT1I LTR MaLR 86 401 -8 2211 282 104 8 chr13 107666923 107667679 -12077219 - L2 LINE L2 -685 2629 1801 376 246 8 8 chr13 107667695 107667817 -12077081 - LTR41 LTR ERVL -651 122 1 519 294 21 43 chr13 107667921 107668108 -12076790 - MER5A DNA MER1_type 0 189 7 33 25 0 0 chr13 107668297 107668337 -12076561 + AT_rich Low_complexity Low_complexity 1 40 0 1989 114 20 30 chr13 107668949 107669247 -12075651 - AluSx SINE Alu -17 295 1 259 384 9 18 chr13 107669270 107669382 -12075516 - MIR SINE MIR -81 127 17 342 211 67 72 chr13 107670191 107670371 -12074527 + L1MC4a LINE L1 5764 5942 -1866 843 175 153 101 chr13 107670915 107671321 -12073577 - MER66A LTR ERV1 0 478 97 1740 142 133 6 chr13 107671486 107671809 -12073089 + MLT1A1 LTR MaLR 1 364 -1 855 273 89 27 chr13 107671818 107672155 -12072743 + MLT1I LTR MaLR 52 409 0 2213 105 3 0 chr13 107672860 107673155 -12071743 - AluSg SINE Alu -14 296 1 452 329 83 13 chr13 107673155 107673529 -12071369 - L1M4c LINE L1 -4654 2375 1976 363 296 92 49 chr13 107673544 107673940 -12070958 - L1M4c LINE L1 -4950 1888 1363 713 216 6 61 chr13 107673954 107674135 -12070763 + MER5B DNA MER1_type 2 172 -6 398 286 65 6 chr13 107674647 107674815 -12070083 + LTR67 LTR ERVL 2 179 -378 273 307 73 15 chr13 107675026 107675300 -12069598 - LTR16B LTR ERVL -109 355 66 21 0 0 0 chr13 107675337 107675358 -12069540 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 107675619 107675651 -12069247 + AT_rich Low_complexity Low_complexity 1 32 0 611 217 102 51 chr13 107675890 107676125 -12068773 + Charlie2 DNA MER1_type 69 315 -2467 869 239 138 16 chr13 107676616 107677071 -12067827 + Charlie2 DNA MER1_type 2237 2770 -92 2327 78 0 20 chr13 107677071 107677377 -12067521 + AluSp SINE Alu 1 300 -13 869 239 138 16 chr13 107677377 107677465 -12067433 + Charlie2 DNA MER1_type 2770 2846 -16 2232 123 0 0 chr13 107677476 107677786 -12067112 + AluSx SINE Alu 1 310 -2 227 313 158 3 chr13 107677908 107678032 -12066866 + MIR3 SINE MIR 14 157 -51 210 387 27 0 chr13 107678252 107678363 -12066535 + L3 LINE CR1 76 189 -1388 1219 173 133 70 chr13 107678366 107678841 -12066057 + Charlie4a DNA MER1_type 1 505 -3 323 313 89 65 chr13 107679897 107680233 -12064665 - L1M4c LINE L1 -5592 1257 914 1287 159 39 0 chr13 107681736 107681968 -12062930 - L1PA16 LINE L1 -9 6157 5917 188 306 82 24 chr13 107682691 107682776 -12062122 + L2 LINE L2 2616 2705 -609 21 0 0 0 chr13 107682844 107682865 -12062033 + AT_rich Low_complexity Low_complexity 1 21 0 1235 171 4 44 chr13 107683667 107683895 -12061003 - AluJo SINE Alu -12 300 82 237 128 0 0 chr13 107685678 107685725 -12059173 + (T)n Simple_repeat Simple_repeat 1 47 0 694 303 111 29 chr13 107685971 107686414 -12058484 - L2 LINE L2 -4 3309 2831 342 152 239 0 chr13 107686524 107686616 -12058282 - MER46A DNA MER2_type -122 114 1 568 314 92 19 chr13 107686629 107686954 -12057944 - L2 LINE L2 -654 2660 2312 636 260 24 107 chr13 107686993 107687366 -12057532 + L2 LINE L2 2968 3309 -4 667 258 72 40 chr13 107687792 107688239 -12056659 - MLT1E LTR MaLR -1 592 58 2214 106 0 31 chr13 107688486 107688806 -12056092 - AluSg SINE Alu 0 310 1 919 216 114 20 chr13 107689067 107689549 -12055349 - MLT1E1 LTR MaLR -2 652 67 1216 227 6 61 chr13 107689627 107689988 -12054910 + MLT1A2 LTR MaLR 1 341 -33 778 171 143 24 chr13 107689989 107690199 -12054699 - MER46A DNA MER2_type 0 236 2 2011 148 0 14 chr13 107690385 107690675 -12054223 - AluSx SINE Alu -26 286 1 231 265 126 47 chr13 107690926 107691141 -12053757 - HAL1 LINE L1 -32 2475 2244 * 662 241 86 108 chr13 107691139 107691823 -12053075 - HAL1 LINE L1 -1181 1326 658 1558 156 141 46 chr13 107691955 107692177 -12052721 - MSTA LTR MaLR 0 428 228 2459 86 3 0 chr13 107692177 107692481 -12052417 - AluSq SINE Alu -8 305 1 1558 156 141 46 chr13 107692481 107692649 -12052249 - MSTA LTR MaLR -200 228 1 321 26 0 0 chr13 107692995 107693033 -12051865 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 2071 110 0 4 chr13 107693033 107693314 -12051584 - AluSx SINE Alu -32 280 1 288 281 62 106 chr13 107693560 107693995 -12050903 - L1ME3A LINE L1 -5 6165 5750 244 297 119 0 chr13 107694007 107694108 -12050790 - L1ME3A LINE L1 -494 5676 5564 1820 128 60 0 chr13 107694178 107694459 -12050439 + AluSx SINE Alu 1 298 -14 229 289 78 28 chr13 107694480 107694660 -12050238 - L1ME3A LINE L1 -1052 5094 4906 228 276 87 16 chr13 107694732 107694859 -12050039 - HAL1 LINE L1 -2371 136 1 22 0 0 0 chr13 107694896 107694918 -12049980 + AT_rich Low_complexity Low_complexity 1 22 0 202 328 0 18 chr13 107696345 107696407 -12048491 - MIR SINE MIR -127 81 20 777 161 26 52 chr13 107697540 107697733 -12047165 + MER3 DNA MER1_type 8 195 -14 1534 134 82 0 chr13 107697995 107698226 -12046672 - AluJb SINE Alu -54 258 9 2273 106 0 0 chr13 107698740 107699041 -12045857 - AluSx SINE Alu -11 301 1 397 217 43 65 chr13 107699545 107699683 -12045215 - L1ME3A LINE L1 -133 6037 5903 2259 89 13 22 chr13 107699685 107699998 -12044900 - AluSg SINE Alu 0 310 1 194 370 48 34 chr13 107700173 107700319 -12044579 - MER5B DNA MER1_type -30 148 1 264 300 46 0 chr13 107700378 107700463 -12044435 - MIR SINE MIR -97 111 24 509 294 102 0 chr13 107700526 107700723 -12044175 - MER58A DNA MER1_type -7 217 1 197 193 175 0 chr13 107701905 107701962 -12042936 + MIR SINE MIR 123 189 -73 2310 93 3 0 chr13 107706065 107706355 -12038543 + AluSp SINE Alu 1 291 -22 830 176 67 36 chr13 107706558 107706831 -12038067 + MER2 DNA MER2_type 1 345 0 1231 245 135 48 chr13 107707134 107707630 -12037268 - L1ME2 LINE L1 -9 6155 5704 2488 87 0 3 chr13 107707630 107707941 -12036957 - AluSg SINE Alu 0 310 1 2646 37 0 0 chr13 107707948 107708247 -12036651 - AluY SINE Alu -12 299 1 1231 245 135 48 chr13 107708247 107708395 -12036503 - L1ME2 LINE L1 -465 5699 5446 897 255 137 32 chr13 107708757 107708952 -12035946 - L1ME3A LINE L1 -20 6150 5977 311 221 13 0 chr13 107708952 107709029 -12035869 - MER116 DNA Mariner 0 80 3 897 255 137 32 chr13 107709029 107709666 -12035232 - L1ME3A LINE L1 -193 5977 5197 42 20 0 0 chr13 107710081 107710130 -12034768 + AT_rich Low_complexity Low_complexity 1 49 0 182 364 132 29 chr13 107710896 107711138 -12033760 + L2 LINE L2 784 1050 -2264 267 377 82 29 chr13 107713791 107713998 -12030900 - L2 LINE L2 -229 3043 2826 1233 124 0 28 chr13 107714756 107714934 -12029964 + AluSq SINE Alu 1 173 -140 2267 105 10 0 chr13 107715033 107715329 -12029569 - AluSg SINE Alu -11 299 1 234 285 62 31 chr13 107715478 107715608 -12029290 - HAL1b LINE L1 -17 1331 1198 240 289 24 0 chr13 107715614 107715697 -12029201 - L1ME LINE L1 -203 5918 5834 905 185 54 19 chr13 107716098 107716357 -12028541 + MER33 DNA MER1_type 56 323 -1 308 280 41 103 chr13 107717048 107717319 -12027579 - L2 LINE L2 -5 3308 3055 499 254 46 29 chr13 107717857 107718030 -12026868 - MER5B DNA MER1_type 0 178 3 207 0 0 0 chr13 107720330 107720353 -12024545 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1723 174 3 3 chr13 107720357 107720639 -12024259 - AluJo SINE Alu -30 282 1 196 343 45 35 chr13 107721315 107721516 -12023382 + L2 LINE L2 1860 2062 -1252 200 298 106 11 chr13 107721582 107721676 -12023222 + L2 LINE L2 2703 2805 -509 246 330 200 14 chr13 107722271 107722486 -12022412 + L2 LINE L2 3005 3259 -13 26 50 0 0 chr13 107723015 107723055 -12021843 + AT_rich Low_complexity Low_complexity 1 40 0 2388 84 0 3 chr13 107723430 107723738 -12021160 - AluSc SINE Alu -2 307 1 248 277 59 20 chr13 107724125 107724226 -12020672 - MIR SINE MIR -2 260 156 181 317 106 0 chr13 107724624 107724728 -12020170 - L2 LINE L2 0 3313 3199 324 271 60 23 chr13 107724779 107724912 -12019986 + MIR SINE MIR 2 139 -123 24 32 0 0 chr13 107725209 107725240 -12019658 + AT_rich Low_complexity Low_complexity 1 31 0 232 293 0 0 chr13 107730566 107730624 -12014274 - L2 LINE L2 -6 3307 3250 984 181 0 0 chr13 107731018 107731184 -12013714 + FAM SINE Alu 2 167 -8 234 0 0 0 chr13 107731213 107731239 -12013659 + (TG)n Simple_repeat Simple_repeat 2 27 0 267 293 121 26 chr13 107731401 107731517 -12013381 + MIR SINE MIR 20 146 -116 190 297 31 0 chr13 107731512 107731576 -12013322 + L2 LINE L2 3215 3280 -33 * 1908 146 0 14 chr13 107734868 107735162 -12009736 + AluJb SINE Alu 1 290 -22 198 103 0 0 chr13 107735162 107735191 -12009707 + (CATA)n Simple_repeat Simple_repeat 4 32 0 1607 190 10 19 chr13 107736124 107736435 -12008463 - AluJo SINE Alu -4 308 1 21 0 0 0 chr13 107736874 107736895 -12008003 + AT_rich Low_complexity Low_complexity 1 21 0 426 314 81 43 chr13 107738347 107738719 -12006179 + L2 LINE L2 1736 2121 -1193 314 298 85 62 chr13 107738719 107739014 -12005884 + L2 LINE L2 2503 2774 -540 186 316 28 57 chr13 107739123 107739300 -12005598 + L2 LINE L2 2974 3145 -168 42 65 0 0 chr13 107740089 107740166 -12004732 + AT_rich Low_complexity Low_complexity 1 77 0 280 271 105 0 chr13 107740358 107740491 -12004407 - L1ME LINE L1 -293 5828 5682 239 294 0 0 chr13 107740542 107740610 -12004288 - L1ME LINE L1 -528 5593 5526 1186 272 86 36 chr13 107741221 107741925 -12002973 + L1MB8 LINE L1 12 810 -6049 * 1963 267 63 50 chr13 107741907 107743098 -12001800 + L1MB8 LINE L1 1747 2953 -4006 3960 202 50 27 chr13 107743110 107743988 -12000910 + L1MB8 LINE L1 5174 6030 -959 1914 141 27 10 chr13 107743988 107744286 -12000612 - AluJo SINE Alu -9 303 1 3960 202 50 27 chr13 107744286 107745147 -11999751 + L1MB8 LINE L1 6030 6954 -35 365 302 136 60 chr13 107745586 107745858 -11999040 - L1ME LINE L1 -1603 4543 4223 2222 89 0 0 chr13 107745858 107746192 -11998706 - AluSc SINE Alu 0 334 1 365 302 136 60 chr13 107746192 107746352 -11998546 - L1ME LINE L1 -1923 4223 4077 650 292 29 33 chr13 107748797 107749037 -11995861 - MIR SINE MIR -4 258 20 235 245 122 10 chr13 107749201 107749299 -11995599 + L2 LINE L2 1866 1974 -1340 225 0 0 0 chr13 107749514 107749539 -11995359 + (T)n Simple_repeat Simple_repeat 1 25 0 197 350 120 10 chr13 107750107 107750207 -11994691 - L2 LINE L2 -21 3292 3182 1896 171 78 103 chr13 107750571 107751093 -11993805 - LTR22 LTR ERVK 0 509 1 21565 98 13 8 chr13 107751093 107754274 -11990624 - HERVK22 LTR ERVK 0 6837 2314 2120 124 0 0 chr13 107754272 107754579 -11990319 - HERVK22 LTR ERVK -6060 777 471 * 2127 64 50 0 chr13 107754562 107754845 -11990053 - HERVK22 LTR ERVK -6540 297 1 2003 191 93 13 chr13 107754845 107755316 -11989582 - LTR22 LTR ERVK 0 509 1 383 237 65 0 chr13 107756256 107756349 -11988549 - L2 LINE L2 -5 3308 3210 802 266 31 13 chr13 107756358 107756584 -11988314 + MIR SINE MIR 2 231 -31 380 299 55 8 chr13 107758066 107758193 -11986705 + MIR SINE MIR 2 134 -128 249 299 103 31 chr13 107758267 107758364 -11986534 - L2 LINE L2 -14 3258 3155 208 279 0 47 chr13 107758674 107758760 -11986138 + T-rich Low_complexity Low_complexity 5 86 0 520 320 166 7 chr13 107760091 107760622 -11984276 + L2 LINE L2 2623 3257 -56 26 0 0 0 chr13 107761614 107761640 -11983258 + AT_rich Low_complexity Low_complexity 1 26 0 211 239 11 163 chr13 107762247 107762339 -11982559 - MIR SINE MIR -86 122 45 492 240 0 0 chr13 107762367 107762463 -11982435 + MER58A DNA MER1_type 1 96 -11 509 227 236 32 chr13 107764066 107764472 -11980426 + L1MC5 LINE L1 7347 7835 -126 315 250 0 0 chr13 107764807 107764879 -11980019 - L1MB8 LINE L1 0 6178 6107 2433 229 85 28 chr13 107764886 107765702 -11979196 - L1ME1 LINE L1 -89 6077 5209 520 192 71 0 chr13 107765703 107765802 -11979096 - FLAM_A SINE Alu -36 106 1 1555 204 84 24 chr13 107765817 107766057 -11978841 - L1ME1 LINE L1 -965 5181 4904 216 0 0 0 chr13 107766057 107766081 -11978817 + (TG)n Simple_repeat Simple_repeat 2 25 0 1555 204 84 24 chr13 107766081 107766257 -11978641 - L1ME1 LINE L1 -1242 4904 4740 192 97 0 0 chr13 107766542 107766573 -11978325 + (TA)n Simple_repeat Simple_repeat 1 31 0 2289 54 14 17 chr13 107766961 107767255 -11977643 - AluY SINE Alu -14 297 5 846 296 73 2 chr13 107767282 107767721 -11977177 - L1ME1 LINE L1 -1429 4717 4248 353 217 109 22 chr13 107767733 107767825 -11977073 + MER58 DNA MER1_type 1 100 -241 186 43 0 0 chr13 107767828 107767851 -11977047 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr13 107767853 107767881 -11977017 + (TA)n Simple_repeat Simple_repeat 2 29 0 434 168 50 10 chr13 107769070 107769171 -11975727 - MER20 DNA MER1_type -33 186 82 251 322 122 19 chr13 107769184 107769389 -11975509 + MIR SINE MIR 16 241 -21 522 200 168 19 chr13 107770123 107770278 -11974620 - MER5A DNA MER1_type -3 186 9 913 97 7 83 chr13 107771588 107771732 -11973166 - FLAM_C SINE Alu 0 133 1 186 274 16 0 chr13 107772018 107772080 -11972818 + MER5A DNA MER1_type 1 63 -126 2483 86 0 0 chr13 107772642 107772943 -11971955 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr13 107773074 107773095 -11971803 + AT_rich Low_complexity Low_complexity 1 21 0 2421 90 0 0 chr13 107773852 107774151 -11970747 - AluSg SINE Alu -11 299 1 657 207 129 13 chr13 107774852 107775084 -11969814 + MER5C DNA MER1_type 21 279 -45 1337 229 89 42 chr13 107775485 107775891 -11969007 + MER63B DNA MER1_type 12 436 0 354 294 117 28 chr13 107777534 107777748 -11967150 + MIR SINE MIR 5 237 -25 530 265 33 28 chr13 107777823 107778004 -11966894 - MIR SINE MIR -34 228 47 181 342 0 26 chr13 107778789 107778865 -11966033 + MIR SINE MIR 135 208 -54 339 25 0 0 chr13 107779458 107779498 -11965400 + (TC)n Simple_repeat Simple_repeat 1 40 0 231 36 0 0 chr13 107779497 107779525 -11965373 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 2894 48 0 3 chr13 107780781 107781118 -11963780 + L1PA7 LINE L1 5819 6154 0 459 250 101 0 chr13 107781535 107781683 -11963215 + L3 LINE CR1 1234 1396 -181 966 179 52 28 chr13 107781859 107782071 -11962827 + MER20 DNA MER1_type 3 219 0 180 333 0 27 chr13 107782131 107782206 -11962692 + MIR SINE MIR 75 147 -115 560 307 34 19 chr13 107782285 107782552 -11962346 - LTR16C LTR ERVL -3 488 218 3799 134 38 2 chr13 107782857 107783439 -11961459 + LTR26 LTR ERV1 1 603 0 276 154 0 0 chr13 107786198 107786250 -11958648 + (TG)n Simple_repeat Simple_repeat 1 52 0 671 244 43 129 chr13 107786344 107786474 -11958424 + L1M4 LINE L1 3852 3992 -2154 1963 148 7 0 chr13 107786474 107786765 -11958133 + AluSx SINE Alu 1 293 -19 192 77 0 0 chr13 107786774 107786800 -11958098 + (TA)n Simple_repeat Simple_repeat 1 26 0 671 244 43 129 chr13 107786800 107787180 -11957718 + L1M4 LINE L1 4000 4312 -1834 2324 93 0 10 chr13 107787180 107787481 -11957417 - AluSq SINE Alu -15 298 1 671 244 43 129 chr13 107787481 107787586 -11957312 + L1M4 LINE L1 4312 4424 -1722 223 157 20 39 chr13 107787811 107787862 -11957036 + CT-rich Low_complexity Low_complexity 5 54 0 2264 175 44 25 chr13 107788162 107788284 -11956614 - MER31A LTR ERV1 0 485 367 3745 128 74 7 chr13 107788284 107788879 -11956019 + LTR24C LTR ERV1 1 635 0 2264 175 44 25 chr13 107788879 107789231 -11955667 - MER31A LTR ERV1 -118 367 2 729 238 6 43 chr13 107789405 107789569 -11955329 - FRAM SINE Alu -8 158 1 296 48 24 0 chr13 107789699 107789741 -11955157 + (TG)n Simple_repeat Simple_repeat 2 44 0 2546 138 16 62 chr13 107789948 107790425 -11954473 + L1MC1 LINE L1 5106 5550 -783 2373 86 7 3 chr13 107790425 107790729 -11954169 - AluSq SINE Alu -8 305 1 2546 138 16 62 chr13 107790729 107790887 -11954011 + L1MC1 LINE L1 5550 5714 -619 3259 74 21 11 chr13 107790893 107791327 -11953571 - L1PA8 LINE L1 -5 6167 5730 3585 146 50 5 chr13 107791327 107791929 -11952969 + L1MC1 LINE L1 5703 6331 -2 271 300 215 31 chr13 107792964 107793094 -11951804 + L2 LINE L2 3119 3272 0 1740 242 149 38 chr13 107793436 107794127 -11950771 + LTR41 LTR ERVL 1 768 -5 493 231 54 23 chr13 107794197 107794327 -11950571 + HERVL40 LTR ERVL 1477 1610 -3920 * 3759 271 86 9 chr13 107794317 107795701 -11949197 + HERVL40 LTR ERVL 2511 4054 -1476 260 257 105 92 chr13 107795730 107795917 -11948981 + L1M4 LINE L1 4468 4651 -1495 2031 151 0 0 chr13 107795917 107796209 -11948689 + AluSx SINE Alu 1 292 -20 260 257 105 92 chr13 107796209 107796660 -11948238 + L1M4 LINE L1 4651 5095 -1051 1693 188 3 3 chr13 107796660 107796947 -11947951 + AluJo SINE Alu 1 287 -25 260 257 105 92 chr13 107796947 107797009 -11947889 + L1M4 LINE L1 5095 5155 -991 2140 121 0 0 chr13 107797009 107797298 -11947600 + AluSx SINE Alu 1 289 -23 260 257 105 92 chr13 107797298 107797373 -11947525 + L1M4 LINE L1 5155 5255 -891 338 68 0 0 chr13 107797382 107797426 -11947472 - MSTA LTR MaLR -384 44 1 1931 49 0 0 chr13 107797455 107797678 -11947220 + AluY SINE Alu 76 298 -13 305 308 196 29 chr13 107797814 107797997 -11946901 + L1MC4a LINE L1 5962 6196 -1612 2365 82 0 0 chr13 107797997 107798291 -11946607 + AluY SINE Alu 1 294 -17 305 308 196 29 chr13 107798291 107798347 -11946551 + L1MC4a LINE L1 6196 6241 -1567 307 337 36 56 chr13 107798354 107798603 -11946295 + L1MC4a LINE L1 6279 6522 -1286 514 258 144 101 chr13 107798607 107799378 -11945520 + L1MC5 LINE L1 6878 7674 -368 1213 132 0 0 chr13 107799391 107799558 -11945340 - AluSp SINE Alu -9 304 138 348 230 122 67 chr13 107799649 107799919 -11944979 + L1MC5 LINE L1 7644 7928 -33 272 247 43 43 chr13 107800078 107800171 -11944727 + L1M4c LINE L1 1551 1643 -4741 294 254 0 0 chr13 107800330 107800397 -11944501 + L1ME3A LINE L1 6095 6161 -9 419 350 73 28 chr13 107800532 107801037 -11943861 + HAL1 LINE L1 1177 1704 -803 1954 198 16 14 chr13 107801276 107801640 -11943258 + MLT1A1 LTR MaLR 1 365 0 270 0 0 0 chr13 107802084 107802114 -11942784 + (TG)n Simple_repeat Simple_repeat 1 30 0 851 239 60 51 chr13 107802132 107802463 -11942435 + MER115 DNA AcHobo 355 688 -5 421 288 129 6 chr13 107802999 107803162 -11941736 + MIR SINE MIR 29 211 -51 1779 180 3 0 chr13 107803173 107803457 -11941441 + AluJo SINE Alu 15 299 -13 1891 134 14 0 chr13 107803881 107804157 -11940741 + AluJb SINE Alu 1 280 -32 345 75 0 0 chr13 107804516 107804569 -11940329 + (CA)n Simple_repeat Simple_repeat 2 54 0 614 183 0 0 chr13 107805364 107805468 -11939430 + U13 snRNA snRNA 1 104 0 860 273 44 22 chr13 107806307 107806578 -11938320 - L1MDa LINE L1 -6225 315 39 3074 241 158 33 chr13 107806605 107807401 -11937497 - L2 LINE L2 -863 2451 1756 1735 167 86 37 chr13 107807401 107807749 -11937149 + MLT1A1 LTR MaLR 1 365 0 3074 241 158 33 chr13 107807749 107807975 -11936923 - L2 LINE L2 -1558 1756 1560 1946 136 0 62 chr13 107807975 107808298 -11936600 + AluSx SINE Alu 1 303 -9 3074 241 158 33 chr13 107808298 107808398 -11936500 - L2 LINE L2 -1754 1560 1188 1679 199 92 55 chr13 107808586 107808852 -11936046 + MER119 DNA MER1_type 78 333 -250 2309 106 0 0 chr13 107808852 107809154 -11935744 + AluSc SINE Alu 6 307 -2 1679 199 92 55 chr13 107809154 107809236 -11935662 + MER119 DNA MER1_type 333 411 -172 2265 111 0 13 chr13 107809236 107809552 -11935346 + AluSx SINE Alu 1 312 0 1679 199 92 55 chr13 107809552 107809690 -11935208 + MER119 DNA MER1_type 411 583 0 5724 130 24 17 chr13 107810309 107811293 -11933605 + L1PA16 LINE L1 5171 6163 -3 2022 142 0 0 chr13 107811304 107811617 -11933281 + AluSc SINE Alu 1 313 0 522 141 222 10 chr13 107811635 107811734 -11933164 + FLAM_C SINE Alu 3 122 -11 758 170 0 0 chr13 107811742 107811877 -11933021 + L1MA3 LINE L1 6170 6304 -1 2594 285 56 8 chr13 107812001 107812831 -11932067 + MER69 DNA AcHobo 1 942 -1584 249 215 101 0 chr13 107812832 107812911 -11931987 + MER69 DNA AcHobo 2124 2210 -316 184 267 93 12 chr13 107817175 107817261 -11927637 - L3 LINE CR1 -1339 238 146 193 349 60 12 chr13 107817392 107817475 -11927423 + L2 LINE L2 2922 3008 -264 235 382 0 0 chr13 107820996 107821132 -11923766 + CT-rich Low_complexity Low_complexity 6 141 0 239 389 0 6 chr13 107821483 107821658 -11923240 + CT-rich Low_complexity Low_complexity 6 179 0 777 250 0 34 chr13 107834526 107834558 -11910340 + MER5A DNA MER1_type 20 52 -137 1292 189 123 64 chr13 107834558 107834906 -11909992 + MLT2D LTR ERVL 1 376 -38 423 0 0 0 chr13 107834906 107834953 -11909945 + (CA)n Simple_repeat Simple_repeat 2 48 0 1292 189 123 64 chr13 107834953 107834995 -11909903 + MLT2D LTR ERVL 376 414 0 777 250 0 34 chr13 107834995 107835138 -11909760 + MER5A DNA MER1_type 52 189 0 4196 148 27 10 chr13 107835364 107836074 -11908824 + MER72 LTR ERV1 1 722 0 782 163 7 0 chr13 107836252 107836393 -11908505 + MLT1B LTR MaLR 3 144 -246 998 119 75 170 chr13 107836474 107836577 -11908321 + MLT1B LTR MaLR 125 236 -154 3739 61 0 10 chr13 107836577 107837070 -11907828 + L1PA8 LINE L1 5685 6172 0 998 119 75 170 chr13 107837070 107837260 -11907638 + MLT1B LTR MaLR 236 390 0 269 167 83 0 chr13 107837400 107837460 -11907438 + MLT1L LTR MaLR 144 208 -407 2052 127 20 0 chr13 107837492 107837791 -11907107 + AluSx SINE Alu 1 305 -7 437 229 157 20 chr13 107837898 107838051 -11906847 + L2 LINE L2 3134 3307 -6 2903 76 2 0 chr13 107838929 107839325 -11905573 + L1PA8A LINE L1 5708 6104 -27 26 30 0 0 chr13 107839343 107839376 -11905522 + AT_rich Low_complexity Low_complexity 1 33 0 375 221 0 0 chr13 107839439 107839525 -11905373 + (TA)n Simple_repeat Simple_repeat 1 86 0 2016 109 35 0 chr13 107839525 107839808 -11905090 - AluSx SINE Alu -12 300 8 321 340 28 21 chr13 107839808 107839949 -11904949 - MIR SINE MIR -57 205 64 302 118 20 0 chr13 107839954 107840005 -11904893 + Alu SINE Alu 1 52 -248 2289 112 0 3 chr13 107840156 107840469 -11904429 + AluSq SINE Alu 1 312 -1 378 341 93 58 chr13 107841127 107841676 -11903222 + L2 LINE L2 2677 3268 -4 232 214 0 71 chr13 107841807 107841863 -11903035 + L2 LINE L2 3250 3301 -12 322 259 200 15 chr13 107841913 107842048 -11902850 + MIR SINE MIR 95 254 -8 344 178 9 47 chr13 107843185 107843292 -11901606 - MER53 DNA DNA 0 189 87 1829 169 0 22 chr13 107843895 107844214 -11900684 + AluJo SINE Alu 1 312 0 2212 106 0 7 chr13 107844551 107844853 -11900045 + AluSq SINE Alu 1 300 -13 1702 127 12 105 chr13 107846191 107846515 -11898383 + AluJo SINE Alu 1 294 -18 1793 112 108 0 chr13 107846518 107846796 -11898102 + AluSx SINE Alu 1 308 -4 901 178 32 50 chr13 107846903 107847083 -11897815 - MER20 DNA MER1_type -3 216 39 1724 133 70 51 chr13 107847083 107847414 -11897484 + MER1B DNA MER1_type 1 337 0 901 178 32 50 chr13 107847414 107847452 -11897446 - MER20 DNA MER1_type -180 39 2 2096 122 55 10 chr13 107847470 107848003 -11896895 + MER51A LTR ERV1 1 625 -9 1454 144 3 161 chr13 107849225 107849566 -11895332 - AluSx SINE Alu -25 287 1 2196 120 0 0 chr13 107851397 107851688 -11893210 + AluSx SINE Alu 1 291 -21 1317 118 90 5 chr13 107852462 107852674 -11892224 + MER30 DNA MER1_type 1 230 0 1058 202 99 9 chr13 107853450 107853673 -11891225 - MIR SINE MIR -18 244 2 304 302 39 47 chr13 107854298 107854524 -11890374 + MLT1I LTR MaLR 94 288 -121 278 253 60 0 chr13 107854906 107854989 -11889909 - L1MC/D LINE L1 -2129 5679 5592 693 252 102 92 chr13 107855333 107855714 -11889184 - HAL1 LINE L1 -1866 641 257 311 291 52 22 chr13 107855756 107855890 -11889008 - HAL1 LINE L1 -2357 150 13 1628 134 3 33 chr13 107855909 107856214 -11888684 - AluJo SINE Alu -16 296 1 2046 82 39 0 chr13 107856348 107856630 -11888268 - AluSx SINE Alu -19 293 1 386 291 222 47 chr13 107857195 107857776 -11887122 + L1M2 LINE L1 512 1194 -5655 402 218 27 0 chr13 107858680 107858790 -11886108 - L1MB8 LINE L1 -27 6151 6039 992 193 18 5 chr13 107858921 107859139 -11885759 + MER41B LTR ERV1 176 396 -239 273 146 0 0 chr13 107859244 107859292 -11885606 + (TA)n Simple_repeat Simple_repeat 2 49 0 421 198 24 148 chr13 107859292 107859486 -11885412 + MER66A LTR ERV1 302 465 -13 1295 191 31 22 chr13 107859489 107859808 -11885090 - L1MB7 LINE L1 -163 6021 5700 1322 176 16 32 chr13 107859812 107860125 -11884773 + MLT1D LTR MaLR 198 505 0 532 264 48 0 chr13 107860125 107860292 -11884606 - MER58 DNA MER1_type -2235 185 11 417 327 30 71 chr13 107860292 107860631 -11884267 + L1ME LINE L1 3729 4053 -2093 379 227 53 0 chr13 107860777 107860852 -11884046 + L2 LINE L2 3190 3268 -4 1664 217 17 38 chr13 107860859 107861238 -11883660 + MLT2D LTR ERVL 1 372 -42 255 31 0 0 chr13 107861238 107861270 -11883628 + (CA)n Simple_repeat Simple_repeat 2 33 0 1664 217 17 38 chr13 107861270 107861310 -11883588 + MLT2D LTR ERVL 372 411 -3 338 280 32 8 chr13 107861316 107861441 -11883457 + L1ME LINE L1 4063 4190 -1956 834 297 82 22 chr13 107861721 107862227 -11882671 + L1ME LINE L1 5260 5803 -367 1965 138 10 3 chr13 107862250 107862539 -11882359 + AluSx SINE Alu 1 291 -21 1864 170 53 16 chr13 107862774 107863220 -11881678 - MER31A LTR ERV1 0 661 22 2523 92 11 24 chr13 107863220 107863258 -11881640 + THE1C LTR MaLR 1 38 -337 4023 201 15 31 chr13 107863258 107863929 -11880969 + PABL_A LTR ERV1 1 660 0 2523 92 11 24 chr13 107863929 107864270 -11880628 + THE1C LTR MaLR 38 375 0 9740 102 49 40 chr13 107864270 107865836 -11879062 + THE1C-int LTR MaLR 1 1580 0 2724 99 8 3 chr13 107865836 107866209 -11878689 + THE1C LTR MaLR 1 375 0 2325 161 24 12 chr13 107866497 107866918 -11877980 - MSTB LTR MaLR 0 426 1 275 300 69 15 chr13 107866918 107867037 -11877861 - L2 LINE L2 -8 3305 3177 323 247 182 32 chr13 107867248 107867402 -11877496 - MLT1J LTR MaLR -1 510 334 380 208 22 0 chr13 107868287 107868379 -11876519 + MER63 DNA MER1_type 653 750 -86 225 269 149 0 chr13 107868385 107868452 -11876446 + MER63 DNA MER1_type 985 1061 0 360 0 0 0 chr13 107868609 107868649 -11876249 + (CA)n Simple_repeat Simple_repeat 2 41 0 394 286 62 0 chr13 107868777 107868889 -11876009 + MIR3 SINE MIR 65 183 -25 196 283 0 0 chr13 107869605 107869651 -11875247 - MIR SINE MIR -12 250 205 2451 93 0 3 chr13 107869923 107870235 -11874663 - AluSx SINE Alu -1 311 1 2251 88 3 0 chr13 107871358 107871674 -11873224 - AluSq SINE Alu 0 317 1 244 130 0 43 chr13 107871639 107871685 -11873213 - Alu SINE Alu -132 170 127 2109 124 0 0 chr13 107872496 107872786 -11872112 - AluSx SINE Alu -22 290 1 197 333 0 0 chr13 107874808 107874862 -11870036 - MIR SINE MIR -175 87 34 1744 171 82 50 chr13 107875490 107875816 -11869082 + MLT1C LTR MaLR 14 359 -108 1641 121 64 32 chr13 107875816 107876097 -11868801 - AluJb SINE Alu -22 290 1 1744 171 82 50 chr13 107876097 107876210 -11868688 + MLT1C LTR MaLR 359 467 0 1665 163 22 0 chr13 107876989 107877266 -11867632 + AluJo SINE Alu 13 295 -17 2021 136 0 13 chr13 107877401 107877702 -11867196 + AluSx SINE Alu 1 297 -15 22 35 0 0 chr13 107877953 107877982 -11866916 + AT_rich Low_complexity Low_complexity 1 29 0 2346 88 0 0 chr13 107878005 107878300 -11866598 + AluSc SINE Alu 13 307 -2 2011 138 3 16 chr13 107878302 107878613 -11866285 + AluJb SINE Alu 1 307 -5 2147 115 0 0 chr13 107879036 107879359 -11865539 + AluSc SINE Alu 1 323 0 198 0 0 0 chr13 107879720 107879742 -11865156 + (TA)n Simple_repeat Simple_repeat 2 23 0 1667 176 17 0 chr13 107880466 107880586 -11864312 + AluJb SINE Alu 1 117 -195 180 0 0 0 chr13 107880586 107880606 -11864292 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1667 176 17 0 chr13 107880606 107880774 -11864124 + AluJb SINE Alu 117 294 -18 1030 169 11 11 chr13 107884261 107884438 -11860460 - FRAM SINE Alu 0 176 1 937 150 0 0 chr13 107884568 107884701 -11860197 + FLAM_C SINE Alu 1 133 0 2113 125 0 0 chr13 107884749 107885036 -11859862 + AluSx SINE Alu 2 288 -24 228 180 60 0 chr13 107885603 107885653 -11859245 + L1ME LINE L1 34 86 -5984 1770 131 22 72 chr13 107885669 107885840 -11859058 - AluSx SINE Alu -7 305 156 2063 114 3 10 chr13 107885840 107886138 -11858760 - AluSg SINE Alu -14 296 1 1770 131 22 72 chr13 107886138 107886287 -11858611 - AluSx SINE Alu -156 156 1 4264 163 75 23 chr13 107887033 107887782 -11857116 - L1MB8 LINE L1 0 6178 5469 2149 112 10 0 chr13 107887782 107888076 -11856822 - AluSx SINE Alu -15 297 1 4264 163 75 23 chr13 107888076 107888156 -11856742 - L1MB8 LINE L1 -709 5469 5395 2127 105 14 10 chr13 107888156 107888451 -11856447 + AluSp SINE Alu 1 296 -17 4264 163 75 23 chr13 107888451 107888477 -11856421 - L1MB8 LINE L1 -783 5395 5281 227 371 0 0 chr13 107889707 107889769 -11855129 - MER91 DNA MER1_type 0 140 79 350 309 37 22 chr13 107889860 107889998 -11854900 - MIR SINE MIR -62 146 31 348 291 54 1 chr13 107890106 107890262 -11854636 - L1M4c LINE L1 -2400 3982 3816 3299 203 86 8 chr13 107890324 107891163 -11853735 - L1M4c LINE L1 -2742 3640 2737 1683 135 10 38 chr13 107891190 107891301 -11853597 - L1MB3 LINE L1 -25 6158 6045 2345 57 40 0 chr13 107891301 107891600 -11853298 - AluY SINE Alu 0 311 1 1683 135 10 38 chr13 107891600 107891776 -11853122 - L1MB3 LINE L1 -138 6045 5879 651 150 24 129 chr13 107891771 107892071 -11852827 - L1M4c LINE L1 -3803 2579 2324 * 10185 162 55 33 chr13 107892066 107892252 -11852646 - L1M4c LINE L1 -4269 2115 1935 1992 147 7 7 chr13 107892252 107892558 -11852340 - AluJo SINE Alu -6 306 1 10185 162 55 33 chr13 107892558 107893058 -11851840 - L1M4c LINE L1 -4449 1935 1447 2382 82 3 0 chr13 107893058 107893350 -11851548 - AluSp SINE Alu -20 293 1 10185 162 55 33 chr13 107893350 107894731 -11850167 - L1M4c LINE L1 -4937 1447 2 922 184 30 26 chr13 107894710 107894944 -11849954 - L1ME LINE L1 -3640 2742 2508 * 2003 230 61 24 chr13 107894924 107895546 -11849352 - L1ME LINE L1 -5179 891 247 265 129 29 0 chr13 107895595 107895665 -11849233 + (TG)n Simple_repeat Simple_repeat 1 72 0 1666 198 0 0 chr13 107896287 107896597 -11848301 + AluJb SINE Alu 1 310 0 21 57 0 0 chr13 107896962 107896997 -11847901 + AT_rich Low_complexity Low_complexity 1 35 0 903 71 9 0 chr13 107897050 107897163 -11847735 + L1MA1 LINE L1 6189 6302 0 233 299 30 0 chr13 107897276 107897343 -11847555 + (CATG)n Simple_repeat Simple_repeat 3 71 0 22 80 0 0 chr13 107898153 107898203 -11846695 + AT_rich Low_complexity Low_complexity 1 50 0 267 301 93 32 chr13 107898311 107898527 -11846371 - L1MC5 LINE L1 -94 7867 7639 482 258 94 69 chr13 107898729 107899300 -11845598 - L1MC5 LINE L1 -492 7495 7071 210 354 61 0 chr13 107899428 107899510 -11845388 - L2 LINE L2 -45 3227 3141 323 298 29 0 chr13 107899732 107899836 -11845062 - MIR SINE MIR -136 126 20 983 154 53 11 chr13 107900728 107900916 -11843982 + L1MB2 LINE L1 5975 6170 -1 1697 144 8 0 chr13 107901045 107901295 -11843603 + L1PA10 LINE L1 5908 6159 -9 197 156 0 22 chr13 107901329 107901374 -11843524 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 588 44 0 0 chr13 107901524 107901592 -11843306 + HY5 scRNA scRNA 9 76 -8 2359 91 7 3 chr13 107901599 107901907 -11842991 + AluSc SINE Alu 1 309 0 21 57 0 0 chr13 107902725 107902760 -11842138 + AT_rich Low_complexity Low_complexity 1 35 0 1804 165 0 31 chr13 107902837 107903159 -11841739 + AluJo SINE Alu 1 312 0 291 114 0 0 chr13 107903708 107903752 -11841146 + (CA)n Simple_repeat Simple_repeat 2 45 0 264 100 0 0 chr13 107903963 107904003 -11840895 + (TG)n Simple_repeat Simple_repeat 2 41 0 1853 181 116 37 chr13 107904314 107904746 -11840152 - MER31B LTR ERV1 0 466 1 332 260 166 30 chr13 107904873 107905042 -11839856 + MIR SINE MIR 71 262 0 390 279 95 88 chr13 107905195 107905478 -11839420 - L1MEd LINE L1 -5099 1020 736 380 238 73 68 chr13 107905483 107905689 -11839209 - Charlie7 DNA MER1_type -975 1637 1431 619 222 52 108 chr13 107905692 107905998 -11838900 - Charlie7 DNA MER1_type -2293 319 31 1024 225 8 33 chr13 107906033 107906277 -11838621 - MER58B DNA MER1_type 0 341 104 979 183 0 11 chr13 107906282 107906457 -11838441 - AluJo SINE Alu -11 301 129 28 38 0 19 chr13 107906457 107906476 -11838422 + AT_rich Low_complexity Low_complexity 1 19 -33 2442 58 0 10 chr13 107906476 107906768 -11838130 - AluY SINE Alu -20 291 3 28 38 0 19 chr13 107906768 107906801 -11838097 + AT_rich Low_complexity Low_complexity 19 52 0 939 131 0 0 chr13 107906801 107906923 -11837975 - AluJo SINE Alu -180 122 1 323 207 135 63 chr13 107906926 107907037 -11837861 - MER58B DNA MER1_type -221 120 2 209 213 64 0 chr13 107907527 107907574 -11837324 + L2 LINE L2 3219 3268 -4 1821 121 4 4 chr13 107910275 107910532 -11834366 + AluSq SINE Alu 6 262 -51 26 0 0 0 chr13 107910534 107910560 -11834338 + AT_rich Low_complexity Low_complexity 1 26 0 1952 144 0 0 chr13 107911080 107911387 -11833511 + AluSx SINE Alu 1 307 0 1432 170 41 30 chr13 107912209 107912479 -11832419 - MER61B LTR ERV1 -29 396 124 508 225 59 24 chr13 107912616 107912785 -11832113 + Charlie7 DNA MER1_type 2438 2612 0 32 35 0 18 chr13 107913246 107913272 -11831626 + AT_rich Low_complexity Low_complexity 1 26 -30 1785 43 0 68 chr13 107913272 107913507 -11831391 + AluY SINE Alu 5 223 -88 32 35 0 18 chr13 107913507 107913537 -11831361 + AT_rich Low_complexity Low_complexity 26 56 0 1838 150 0 37 chr13 107913718 107914018 -11830880 - AluJo SINE Alu -19 293 5 856 138 62 0 chr13 107914509 107914639 -11830259 + AluJo SINE Alu 5 142 -170 2033 146 0 16 chr13 107914813 107915121 -11829777 + AluSx SINE Alu 1 303 -9 293 194 39 117 chr13 107915327 107915430 -11829468 + MIR SINE MIR 118 212 -50 446 304 90 40 chr13 107916050 107916452 -11828446 - L1MEd LINE L1 -3459 2670 2249 226 356 104 0 chr13 107916890 107917025 -11827873 + MLT1J2 LTR MaLR 182 330 -120 880 270 49 68 chr13 107917286 107917699 -11827199 - L1MEd LINE L1 -4641 1669 1250 6365 169 13 4 chr13 107917699 107919633 -11825265 + L1PA15 LINE L1 4217 6163 -2 880 270 49 68 chr13 107919633 107920144 -11824754 - L1MEd LINE L1 -5060 1250 725 444 322 28 23 chr13 107920152 107920329 -11824569 + MIR SINE MIR 48 225 -37 354 218 0 39 chr13 107920360 107920438 -11824460 + L2 LINE L2 3193 3267 -5 194 312 75 32 chr13 107920578 107920764 -11824134 - L2 LINE L2 -43 3270 3077 420 209 6 37 chr13 107920764 107920927 -11823971 + GA-rich Low_complexity Low_complexity 3 160 0 779 294 47 89 chr13 107921020 107921145 -11823753 - L2 LINE L2 -289 3024 2895 317 64 21 0 chr13 107921145 107921192 -11823706 + L1PA8 LINE L1 6125 6172 0 779 294 47 89 chr13 107921192 107921233 -11823665 - L2 LINE L2 -418 2895 2854 1824 130 14 3 chr13 107921233 107921518 -11823380 + AluSx SINE Alu 1 288 -24 779 294 47 89 chr13 107921518 107921732 -11823166 - L2 LINE L2 -459 2854 2657 357 320 111 55 chr13 107924720 107925142 -11819756 - L2 LINE L2 0 3272 2827 1540 100 73 0 chr13 107925456 107925717 -11819181 + L1MA8 LINE L1 6005 6284 -7 23 0 0 0 chr13 107925723 107925746 -11819152 + AT_rich Low_complexity Low_complexity 1 23 0 1789 160 7 10 chr13 107927022 107927329 -11817569 - AluJo SINE Alu -6 306 1 2151 134 3 0 chr13 107928498 107928804 -11816094 + AluSx SINE Alu 1 307 -5 768 303 200 16 chr13 107929972 107930407 -11814491 + L3 LINE CR1 1051 1565 -12 631 274 48 7 chr13 107930565 107930745 -11814153 + MIR SINE MIR 1 185 -63 689 199 29 18 chr13 107930749 107930920 -11813978 - L1MB8 LINE L1 -27 6151 5979 440 157 12 0 chr13 107931194 107931277 -11813621 - L1MD1 LINE L1 -8 6234 6151 297 269 72 93 chr13 107931958 107932151 -11812747 - MER5B DNA MER1_type 0 189 1 25 0 0 0 chr13 107932242 107932267 -11812631 + AT_rich Low_complexity Low_complexity 1 25 0 198 103 0 0 chr13 107932431 107932460 -11812438 + (A)n Simple_repeat Simple_repeat 1 29 0 1417 155 155 11 chr13 107932472 107932736 -11812162 + AluJb SINE Alu 1 302 0 1065 164 27 0 chr13 107933541 107933724 -11811174 + MER5A DNA MER1_type 1 188 -1 364 271 133 40 chr13 107935703 107935928 -11808970 + MIR SINE MIR 17 262 0 413 327 89 47 chr13 107935946 107936328 -11808570 + L2 LINE L2 2875 3272 0 22 0 0 0 chr13 107936946 107936968 -11807930 + AT_rich Low_complexity Low_complexity 1 22 0 418 242 62 19 chr13 107937430 107937591 -11807307 + L1ME LINE L1 500 667 -5403 409 188 12 12 chr13 107937730 107937810 -11807088 - AluS SINE Alu -232 80 1 394 326 0 37 chr13 107938150 107938285 -11806613 + MER5B DNA MER1_type 9 138 -40 1560 244 50 2 chr13 107938767 107939222 -11805676 - L1ME2 LINE L1 -8 6156 5680 32 0 0 0 chr13 107939227 107939259 -11805639 + AT_rich Low_complexity Low_complexity 1 32 0 985 83 0 15 chr13 107939286 107939418 -11805480 + AluJ SINE Alu 3 132 -170 687 216 0 0 chr13 107939418 107939534 -11805364 + AluJ SINE Alu 183 298 -14 1674 157 48 27 chr13 107939534 107939709 -11805189 - L1MB7 LINE L1 -61 6123 5953 1982 158 3 0 chr13 107939709 107940020 -11804878 - AluSx SINE Alu 0 312 1 1674 157 48 27 chr13 107940020 107940321 -11804577 - L1MB7 LINE L1 -231 5953 5558 1322 241 93 70 chr13 107940324 107940502 -11804396 - L1MB7 LINE L1 -967 5179 5007 1749 197 0 3 chr13 107940502 107940801 -11804097 - AluJo SINE Alu -14 298 1 1322 241 93 70 chr13 107940801 107941193 -11803705 - L1MB7 LINE L1 -1139 5007 4625 1782 160 35 0 chr13 107941193 107941481 -11803417 + AluJb SINE Alu 1 298 -14 1322 241 93 70 chr13 107941481 107941626 -11803272 - L1MB7 LINE L1 -1521 4625 4485 4323 91 11 3 chr13 107941626 107942243 -11802655 + L1PB2 LINE L1 5527 6148 -3 1322 241 93 70 chr13 107942243 107942493 -11802405 - L1MB7 LINE L1 -1661 4485 4190 239 163 0 0 chr13 107942980 107943023 -11801875 - MLT1K LTR MaLR 0 588 546 1975 56 0 0 chr13 107944661 107944892 -11800006 + AluY SINE Alu 72 302 -9 24 32 0 0 chr13 107945486 107945517 -11799381 + AT_rich Low_complexity Low_complexity 1 31 0 522 105 0 0 chr13 107945923 107945999 -11798899 - MER116 DNA Mariner 0 80 5 668 212 61 66 chr13 107946346 107946558 -11798340 + MIR SINE MIR 52 262 0 2172 88 32 0 chr13 107946701 107946985 -11797913 - AluSx SINE Alu -19 293 1 196 288 34 0 chr13 107947376 107947435 -11797463 - MIR SINE MIR -63 145 85 1830 161 49 49 chr13 107947436 107947826 -11797072 - MLT1B LTR MaLR 0 390 1 219 326 159 23 chr13 107947942 107948074 -11796824 - L2 LINE L2 -6 3266 3117 1598 165 81 0 chr13 107948263 107948548 -11796350 + AluJo SINE Alu 5 312 0 183 276 120 52 chr13 107948678 107948870 -11796028 - MIR SINE MIR -38 224 20 1660 122 23 25 chr13 107948980 107949324 -11795574 - MER4A LTR ERV1 0 664 263 449 105 12 35 chr13 107949324 107949410 -11795488 - MER4A LTR ERV1 -566 98 15 1136 169 28 33 chr13 107949600 107949813 -11795085 + AluJo SINE Alu 85 296 -16 866 182 30 15 chr13 107950695 107950898 -11794000 + MER2 DNA MER2_type 1 206 -139 362 273 133 18 chr13 107951029 107951194 -11793704 + MIR SINE MIR 31 214 -48 216 0 0 0 chr13 107951855 107951879 -11793019 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1515 158 8 0 chr13 107952065 107952305 -11792593 + AluJb SINE Alu 1 242 -70 300 280 51 69 chr13 107953028 107953203 -11791695 - MER5B DNA MER1_type -6 172 1 238 216 20 137 chr13 107953577 107953679 -11791219 + L2 LINE L2 3202 3291 -22 266 237 62 41 chr13 107953927 107954024 -11790874 + L2 LINE L2 3182 3280 -33 2103 106 55 0 chr13 107954120 107954412 -11790486 - AluSx SINE Alu -4 308 1 338 257 163 36 chr13 107954466 107954724 -11790174 - L2 LINE L2 -236 3036 2728 342 276 231 11 chr13 107954802 107955161 -11789737 - L2 LINE L2 -852 2462 2025 288 284 81 56 chr13 107955314 107955488 -11789410 - L1ME4a LINE L1 -171 5950 5782 2515 55 0 0 chr13 107955488 107955779 -11789119 - AluSc SINE Alu -18 291 1 288 284 81 56 chr13 107955779 107955999 -11788899 - L1ME4a LINE L1 -339 5782 5546 392 268 104 23 chr13 107956732 107956952 -11787946 - MARNA DNA Mariner -78 508 271 477 88 100 12 chr13 107957030 107957110 -11787788 + FLAM SINE Alu 38 124 -19 2332 90 13 3 chr13 107959436 107959737 -11785161 - AluSx SINE Alu -8 304 1 374 311 44 108 chr13 107959769 107960177 -11784721 + L2 LINE L2 2855 3236 -36 210 292 15 0 chr13 107960434 107960499 -11784399 + (TA)n Simple_repeat Simple_repeat 2 67 0 281 264 0 14 chr13 107960677 107960749 -11784149 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 595 275 192 30 chr13 107960750 107961187 -11783711 - MLT1G3 LTR MaLR 0 567 60 463 364 34 5 chr13 107961442 107961648 -11783250 + MIR SINE MIR 15 226 -36 538 280 192 47 chr13 107961879 107962107 -11782791 + L2 LINE L2 2896 3089 -224 183 80 0 0 chr13 107962107 107962132 -11782766 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 538 280 192 47 chr13 107962132 107962267 -11782631 + L2 LINE L2 3089 3312 -1 325 326 0 0 chr13 107962896 107962982 -11781916 + L2 LINE L2 3183 3268 -4 243 228 0 18 chr13 107963962 107964019 -11780879 + (TAA)n Simple_repeat Simple_repeat 1 56 0 4324 151 18 10 chr13 107964022 107964745 -11780153 + MER44D DNA MER2_type 4 604 -1 770 306 51 4 chr13 107964747 107964982 -11779916 + MIR SINE MIR 17 262 0 189 294 20 0 chr13 107965098 107965149 -11779749 + L2 LINE L2 3219 3270 -2 2330 103 0 0 chr13 107965173 107965475 -11779423 - AluSq SINE Alu -11 302 1 280 268 9 80 chr13 107967343 107967455 -11777443 - MIR3 SINE MIR -34 174 71 296 236 75 0 chr13 107967562 107967668 -11777230 - L1MC4 LINE L1 0 8042 7929 754 235 33 27 chr13 107967747 107967930 -11776968 - MER82 DNA MER2_type -6 647 464 243 315 82 54 chr13 107967994 107968178 -11776720 + MIR SINE MIR 21 209 -53 201 222 22 0 chr13 107968183 107968228 -11776670 + (TA)n Simple_repeat Simple_repeat 2 47 0 328 262 12 0 chr13 107968229 107968313 -11776585 - MER82 DNA MER2_type -566 87 3 360 0 0 0 chr13 107968313 107968353 -11776545 + (CA)n Simple_repeat Simple_repeat 1 40 0 3001 199 103 5 chr13 107968362 107969178 -11775720 - L1MC4 LINE L1 -687 7355 6460 2747 201 108 5 chr13 107970494 107971255 -11773643 - L1MC4 LINE L1 -744 7298 6460 532 315 184 22 chr13 107973446 107973859 -11771039 - L2 LINE L2 -5 3308 2829 894 248 93 3 chr13 107973897 107974199 -11770699 - L2 LINE L2 -800 2514 2186 23 54 0 0 chr13 107974227 107974264 -11770634 + AT_rich Low_complexity Low_complexity 1 37 0 21 95 0 0 chr13 107974302 107974365 -11770533 + AT_rich Low_complexity Low_complexity 1 63 0 314 248 86 9 chr13 107974779 107974884 -11770014 - L2 LINE L2 -1 3271 3159 464 146 12 0 chr13 107975198 107975280 -11769618 - L1MB8 LINE L1 -15 6163 6081 201 184 26 0 chr13 107975719 107975757 -11769141 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 358 237 58 114 chr13 107976426 107976716 -11768182 + Charlie8 DNA MER1_type 19 277 -2140 382 287 42 14 chr13 107977231 107977374 -11767524 - MLT1G1 LTR MaLR -18 577 431 208 191 21 0 chr13 107977849 107977896 -11767002 + (TA)n Simple_repeat Simple_repeat 1 48 0 236 200 71 71 chr13 107978019 107978089 -11766809 - MIR SINE MIR -96 166 97 493 274 130 1 chr13 107978109 107978300 -11766598 + MIR SINE MIR 50 262 0 185 0 40 0 chr13 107978826 107978851 -11766047 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 731 135 0 0 chr13 107978858 107978969 -11765929 - FRAM SINE Alu -33 143 33 2333 52 10 7 chr13 107980793 107981083 -11763815 - AluY SINE Alu -20 291 1 260 248 88 9 chr13 107984221 107984334 -11760564 - L1MDb LINE L1 -5103 1293 1172 327 232 251 13 chr13 107984338 107984530 -11760368 - L1MDb LINE L1 -5212 1184 928 613 200 9 0 chr13 107985473 107985588 -11759310 - AluJb SINE Alu -23 289 174 182 333 35 0 chr13 107986142 107986199 -11758699 + L2 LINE L2 3027 3085 -187 21 36 0 0 chr13 107987221 107987249 -11757649 + AT_rich Low_complexity Low_complexity 1 28 0 783 324 35 10 chr13 107989216 107989506 -11755392 - LTR16B LTR ERVL -2 462 166 581 303 77 61 chr13 107989641 107990070 -11754828 + L2 LINE L2 2362 2797 -517 252 360 40 0 chr13 107990124 107990224 -11754674 + L2 LINE L2 2896 2999 -273 216 97 0 0 chr13 107990378 107990409 -11754489 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 217 372 172 24 chr13 107990976 107991226 -11753672 + L2 LINE L2 2578 2864 -450 402 168 0 32 chr13 107991242 107991337 -11753561 + Ricksha DNA DNA 9 100 -3146 * 7242 137 68 48 chr13 107991322 107992449 -11752449 + Ricksha DNA DNA 1710 2875 -371 579 164 127 9 chr13 107992449 107992559 -11752339 - FLAM_A SINE Alu -10 123 1 7242 137 68 48 chr13 107992559 107992938 -11751960 + Ricksha DNA DNA 2875 3245 -1 241 45 23 23 chr13 107993619 107993663 -11751235 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 22 56 0 0 chr13 107994616 107994652 -11750246 + AT_rich Low_complexity Low_complexity 1 36 0 246 32 0 0 chr13 107995408 107995439 -11749459 + (CA)n Simple_repeat Simple_repeat 2 32 0 1094 311 161 18 chr13 107995454 107996074 -11748824 - L3 LINE CR1 -296 1281 573 312 257 14 0 chr13 107996185 107996255 -11748643 + L2 LINE L2 3167 3237 -35 1774 177 0 3 chr13 107997000 107997306 -11747592 - AluSx SINE Alu 0 305 1 2100 80 48 7 chr13 107998583 107998872 -11746026 - AluSx SINE Alu -11 301 1 411 98 0 0 chr13 108001105 108001166 -11743732 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr13 108001392 108001413 -11743485 + AT_rich Low_complexity Low_complexity 1 21 0 541 270 97 16 chr13 108002388 108002573 -11742325 - MIR SINE MIR -57 205 6 531 272 96 38 chr13 108002721 108002960 -11741938 - L2 LINE L2 -257 3056 2804 1219 240 51 5 chr13 108002965 108003340 -11741558 - LTR16A LTR ERVL 0 450 59 557 261 202 16 chr13 108003378 108003685 -11741213 - L2 LINE L2 -493 2821 2458 2475 167 43 94 chr13 108006499 108007222 -11737676 + L1PA13 LINE L1 5478 6163 0 860 237 141 42 chr13 108007493 108007957 -11736941 - L2 LINE L2 -3 3310 2768 2121 134 31 28 chr13 108007957 108008316 -11736582 + THE1B LTR MaLR 5 364 0 860 237 141 42 chr13 108008316 108008543 -11736355 - L2 LINE L2 -545 2768 2565 310 368 78 28 chr13 108009354 108009922 -11734976 + L2 LINE L2 2379 2974 -340 1825 126 0 4 chr13 108010229 108010490 -11734408 - AluSg SINE Alu -9 301 42 264 321 138 18 chr13 108011913 108012131 -11732767 + L2 LINE L2 2734 2977 -337 2373 74 3 0 chr13 108012187 108012485 -11732413 - AluY SINE Alu -12 299 1 2207 126 3 0 chr13 108013159 108013461 -11731437 - AluSx SINE Alu -9 303 1 453 256 185 15 chr13 108015248 108015443 -11729455 - MIR SINE MIR -21 241 14 2301 108 0 6 chr13 108016644 108016958 -11727940 + AluSx SINE Alu 1 312 0 240 86 0 0 chr13 108019122 108019157 -11725741 + (TG)n Simple_repeat Simple_repeat 2 36 0 1827 160 0 21 chr13 108019160 108019448 -11725450 - AluJo SINE Alu -30 282 1 3940 166 46 38 chr13 108021017 108021307 -11723591 - L1MC3 LINE L1 -21 7764 7478 1896 165 7 10 chr13 108021307 108021616 -11723282 - AluJb SINE Alu -4 308 1 3940 166 46 38 chr13 108021616 108021807 -11723091 - L1MC3 LINE L1 -307 7478 7290 883 225 12 0 chr13 108021807 108021980 -11722918 - FAM SINE Alu 0 175 1 3940 166 46 38 chr13 108021980 108022365 -11722533 - L1MC3 LINE L1 -495 7290 6890 304 260 130 8 chr13 108022697 108022820 -11722078 - MIR SINE MIR -6 256 119 492 229 175 6 chr13 108022838 108023129 -11721769 + MLT1F LTR MaLR 216 540 -2 236 298 36 0 chr13 108023418 108023502 -11721396 + MIR SINE MIR 64 150 -112 288 313 12 55 chr13 108024175 108024338 -11720560 - L2 LINE L2 0 3313 3158 539 256 141 52 chr13 108024380 108024685 -11720213 + MLT1J LTR MaLR 7 338 -173 1866 199 18 39 chr13 108024822 108025019 -11719879 - MLT1A2 LTR MaLR 0 374 187 321 26 0 0 chr13 108025019 108025057 -11719841 + (GA)n Simple_repeat Simple_repeat 2 39 0 1866 199 18 39 chr13 108025057 108025241 -11719657 - MLT1A2 LTR MaLR -187 187 1 554 343 77 19 chr13 108025320 108025750 -11719148 - L2 LINE L2 -338 2976 2426 385 290 189 14 chr13 108025958 108026175 -11718723 + MIR SINE MIR 3 257 -5 282 317 96 71 chr13 108028320 108028673 -11716225 - L2 LINE L2 -14 3258 2897 1501 117 32 14 chr13 108028794 108029074 -11715824 + THE1C LTR MaLR 1 375 0 329 243 33 21 chr13 108029174 108029304 -11715594 - MLT1I LTR MaLR -5 445 315 521 252 100 9 chr13 108029355 108029565 -11715333 - MLT1J2 LTR MaLR -216 234 6 209 250 77 67 chr13 108029949 108030053 -11714845 + L2 LINE L2 3168 3272 0 205 303 30 30 chr13 108030863 108030962 -11713936 - L2 LINE L2 0 3272 3174 221 145 81 0 chr13 108031256 108031318 -11713580 + (TA)n Simple_repeat Simple_repeat 1 67 0 279 0 0 0 chr13 108031461 108031492 -11713406 + (CA)n Simple_repeat Simple_repeat 2 32 0 273 268 31 0 chr13 108031920 108032017 -11712881 - MER103 DNA DNA -29 137 38 1582 228 64 58 chr13 108032429 108032650 -11712248 - LTR40a LTR ERVL 0 519 301 233 70 47 0 chr13 108032650 108032693 -11712205 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2782 80 0 0 chr13 108032693 108033029 -11711869 - L1PA8 LINE L1 -17 6155 5820 1582 228 64 58 chr13 108033029 108033145 -11711753 - LTR40a LTR ERVL -218 301 187 2089 130 0 17 chr13 108033145 108033444 -11711454 - AluSq SINE Alu -19 294 1 1582 228 64 58 chr13 108033444 108033618 -11711280 - LTR40a LTR ERVL -332 187 3 241 214 18 0 chr13 108034273 108034329 -11710569 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 581 234 83 67 chr13 108034434 108034550 -11710348 + MER5C DNA MER1_type 3 116 -208 2333 109 3 0 chr13 108034550 108034852 -11710046 - AluSx SINE Alu -5 307 5 581 234 83 67 chr13 108034852 108035047 -11709851 + MER5C DNA MER1_type 116 319 -5 528 190 26 26 chr13 108035336 108035452 -11709446 - MIR SINE MIR -104 158 43 294 283 210 10 chr13 108035945 108036150 -11708748 - MIR SINE MIR -15 247 2 819 262 94 55 chr13 108036335 108036751 -11708147 + MLT1H LTR MaLR 118 549 0 28 0 0 0 chr13 108036860 108036888 -11708010 + AT_rich Low_complexity Low_complexity 1 28 0 267 255 0 0 chr13 108036932 108036983 -11707915 + polypyrimidine Low_complexity Low_complexity 5 55 0 467 313 70 14 chr13 108037012 108037226 -11707672 - L1MC4 LINE L1 -249 7793 7568 192 40 0 0 chr13 108038121 108038146 -11706752 + (TG)n Simple_repeat Simple_repeat 1 25 0 261 75 0 0 chr13 108038146 108038186 -11706712 + (GA)n Simple_repeat Simple_repeat 2 41 0 535 247 212 0 chr13 108039122 108039268 -11705630 - MER5A DNA MER1_type 0 189 13 403 214 15 84 chr13 108039355 108039402 -11705496 + MER5A DNA MER1_type 54 103 -86 2102 218 58 84 chr13 108039402 108039842 -11705056 + MLT1E2 LTR MaLR 1 451 -175 1835 164 4 0 chr13 108039842 108040123 -11704775 + AluJo SINE Alu 1 282 -30 2102 218 58 84 chr13 108040123 108040156 -11704742 + MLT1E2 LTR MaLR 451 483 -143 2005 167 3 3 chr13 108040156 108040468 -11704430 + AluJb SINE Alu 1 312 0 2102 218 58 84 chr13 108040468 108040634 -11704264 + MLT1E2 LTR MaLR 483 624 -2 403 214 15 84 chr13 108040634 108040717 -11704181 + MER5A DNA MER1_type 103 175 -14 181 283 0 98 chr13 108040756 108040848 -11704050 + MIR SINE MIR 70 152 -110 491 215 203 25 chr13 108042268 108042426 -11702472 + MER5A DNA MER1_type 4 189 0 273 57 0 0 chr13 108042992 108043027 -11701871 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 2380 116 105 8 chr13 108043027 108043408 -11701490 - MSTA LTR MaLR -10 418 1 441 36 0 0 chr13 108043426 108043481 -11701417 + (CCTA)n Simple_repeat Simple_repeat 1 55 0 207 200 25 0 chr13 108044456 108044496 -11700402 + L2 LINE L2 3218 3258 -14 1679 227 6 0 chr13 108044905 108045262 -11699636 - L1MD3 LINE L1 -1 7994 7636 352 365 14 7 chr13 108045262 108045410 -11699488 + MIR3 SINE MIR 45 193 -15 772 161 8 0 chr13 108045471 108045589 -11699309 - FLAM_A SINE Alu -18 124 6 1365 156 0 5 chr13 108048290 108048502 -11696396 - L1PA15 LINE L1 -2 6163 5953 2253 104 10 0 chr13 108048545 108048844 -11696054 + AluSp SINE Alu 1 302 -11 201 200 22 0 chr13 108048915 108048960 -11695938 + (CAAT)n Simple_repeat Simple_repeat 3 48 0 181 379 121 30 chr13 108049021 108049153 -11695745 - L2 LINE L2 0 3272 3129 437 247 0 82 chr13 108049220 108049390 -11695508 - L2 LINE L2 0 3313 3158 316 289 75 102 chr13 108049642 108049829 -11695069 + MIR3 SINE MIR 11 192 -16 225 247 65 32 chr13 108050215 108050308 -11694590 + MIR SINE MIR 15 110 -152 533 323 41 9 chr13 108051384 108051604 -11693294 + MIR SINE MIR 6 232 -30 850 201 126 100 chr13 108052683 108052952 -11691946 - L1MB1 LINE L1 -1 6167 5892 2158 101 9 25 chr13 108053002 108053320 -11691578 - AluSq SINE Alu 0 313 1 212 280 0 0 chr13 108053346 108053396 -11691502 + L2 LINE L2 3254 3303 -10 2133 120 7 0 chr13 108053440 108053739 -11691159 + AluSx SINE Alu 3 303 -9 391 197 110 47 chr13 108053884 108054011 -11690887 - MIR SINE MIR 0 262 128 2862 131 7 16 chr13 108054203 108054639 -11690259 - L1PB3 LINE L1 0 6154 5723 428 86 14 0 chr13 108055637 108055707 -11689191 + (GA)n Simple_repeat Simple_repeat 1 71 0 21 36 0 0 chr13 108058087 108058115 -11686783 + AT_rich Low_complexity Low_complexity 1 28 0 416 99 0 12 chr13 108058302 108058383 -11686515 + (GA)n Simple_repeat Simple_repeat 1 80 0 444 297 39 0 chr13 108058569 108058697 -11686201 + MER94 DNA DNA 1 133 -1 2378 88 3 3 chr13 108060679 108060985 -11683913 - AluSg SINE Alu -4 306 1 2542 191 28 42 chr13 108061419 108061985 -11682913 - MLT1F1 LTR MaLR -2 565 8 216 363 26 18 chr13 108063880 108063993 -11680905 - MIR3 SINE MIR -30 178 65 2075 119 40 10 chr13 108064281 108064584 -11680314 + AluSx SINE Alu 1 312 0 279 175 0 0 chr13 108064821 108064878 -11680020 + GA-rich Low_complexity Low_complexity 3 59 0 22 56 0 0 chr13 108064968 108065004 -11679894 + AT_rich Low_complexity Low_complexity 1 36 0 336 195 13 39 chr13 108065359 108065436 -11679462 + L2 LINE L2 3235 3309 -4 501 47 0 0 chr13 108067135 108067199 -11677699 - AluY SINE Alu -10 302 239 808 71 0 27 chr13 108067200 108067312 -11677586 - AluY SINE Alu -202 109 1 1672 93 35 0 chr13 108067316 108067542 -11677356 - AluSc SINE Alu -11 298 65 2778 132 2 19 chr13 108068230 108068647 -11676251 - L1PA13 LINE L1 -11 6152 5743 2355 140 27 16 chr13 108068844 108069215 -11675683 - THE1C LTR MaLR 0 375 1 10616 108 38 49 chr13 108069217 108070812 -11674086 - THE1C-int LTR MaLR -2 1578 1 2195 133 71 17 chr13 108070812 108071165 -11673733 - THE1C LTR MaLR 0 375 4 1617 178 7 29 chr13 108071318 108071627 -11673271 - AluJo SINE Alu -10 302 1 2169 203 75 6 chr13 108071681 108072184 -11672714 - L1M4 LINE L1 -838 5308 4771 684 304 77 21 chr13 108073045 108073381 -11671517 - L2 LINE L2 0 3313 2959 1042 243 60 93 chr13 108073393 108073564 -11671334 - L2 LINE L2 -461 2853 2678 1906 164 0 0 chr13 108073564 108073857 -11671041 + AluSx SINE Alu 1 293 -19 1042 243 60 93 chr13 108073857 108074031 -11670867 - L2 LINE L2 -636 2678 2530 1922 209 20 6 chr13 108074031 108074389 -11670509 - MLT1A1 LTR MaLR 0 365 3 1042 243 60 93 chr13 108074389 108074589 -11670309 - L2 LINE L2 -784 2530 2325 1089 204 5 0 chr13 108075019 108075235 -11669663 - L1MB4 LINE L1 -6 6174 5958 25 31 0 0 chr13 108075235 108075267 -11669631 + AT_rich Low_complexity Low_complexity 1 32 0 4052 173 38 25 chr13 108075282 108076082 -11668816 - L1MA6 LINE L1 -22 6278 5469 2155 139 116 13 chr13 108076343 108076731 -11668167 - MSTA LTR MaLR 0 428 1 7956 180 24 44 chr13 108076731 108078416 -11666482 - MSTA-int LTR MaLR 0 1651 1 2109 132 127 18 chr13 108078416 108078802 -11666096 - MSTA LTR MaLR 0 428 1 1871 156 3 10 chr13 108079199 108079494 -11665404 - AluJb SINE Alu -19 293 1 358 212 30 30 chr13 108080093 108080192 -11664706 - L1ME LINE L1 -689 5432 5334 184 208 21 0 chr13 108080272 108080368 -11664530 + (TA)n Simple_repeat Simple_repeat 1 98 0 1457 201 65 21 chr13 108082089 108082507 -11662391 + MLT1C LTR MaLR 6 441 -26 1162 130 0 0 chr13 108083903 108084065 -11660833 - AluSg/x SINE Alu -17 293 132 230 284 95 14 chr13 108084830 108084904 -11659994 - L2 LINE L2 0 3313 3234 240 146 0 0 chr13 108085890 108085931 -11658967 - L2 LINE L2 -5 3308 3268 407 335 43 6 chr13 108087374 108087537 -11657361 + MIR SINE MIR 22 193 -62 334 324 101 62 chr13 108090181 108090682 -11654216 + L2 LINE L2 2749 3271 -1 677 278 121 43 chr13 108092036 108092525 -11652373 + MLT1F LTR MaLR 12 538 -4 29 28 0 0 chr13 108092886 108092922 -11651976 + AT_rich Low_complexity Low_complexity 1 36 0 417 329 24 0 chr13 108093912 108094076 -11650822 + (TCCA)n Simple_repeat Simple_repeat 3 170 0 225 260 0 0 chr13 108094120 108094170 -11650728 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 207 100 0 0 chr13 108095341 108095371 -11649527 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 359 305 66 23 chr13 108095630 108095810 -11649088 + MIR SINE MIR 2 183 -25 257 305 167 75 chr13 108096041 108096520 -11648378 + L2 LINE L2 2018 2540 -774 333 319 56 106 chr13 108096666 108097127 -11647771 + L2 LINE L2 2835 3272 0 2810 151 54 18 chr13 108097279 108097323 -11647575 - MLT2B1 LTR ERVL 0 520 479 180 77 0 0 chr13 108097323 108097349 -11647549 + (TA)n Simple_repeat Simple_repeat 2 27 0 2810 151 54 18 chr13 108097349 108097806 -11647092 - MLT2B1 LTR ERVL -41 479 1 350 269 0 14 chr13 108099065 108099206 -11645692 + CT-rich Low_complexity Low_complexity 2 140 0 237 284 45 23 chr13 108099933 108100021 -11644877 + MIR SINE MIR 58 147 -61 227 351 39 0 chr13 108100031 108100108 -11644790 + MIR3 SINE MIR 115 194 -14 390 57 0 0 chr13 108100125 108100178 -11644720 + (CA)n Simple_repeat Simple_repeat 2 54 0 1086 184 60 80 chr13 108101311 108101716 -11643182 - MLT1B LTR MaLR 0 396 5 235 173 115 0 chr13 108101718 108101770 -11643128 - MLT1A2 LTR MaLR -313 61 4 302 312 77 13 chr13 108102172 108102354 -11642544 - MIR SINE MIR -52 210 14 6110 155 43 6 chr13 108104960 108106154 -11638744 - L1MA8 LINE L1 -3 6288 5140 1779 94 116 31 chr13 108106154 108106473 -11638425 - L1PA13 LINE L1 -2 6161 5816 4807 52 3 0 chr13 108106478 108107068 -11637830 - L1PA7 LINE L1 0 6154 5563 6110 155 43 6 chr13 108107068 108107934 -11636964 - L1MA8 LINE L1 -1154 5137 4147 401 101 56 11 chr13 108107936 108108025 -11636873 + CT-rich Low_complexity Low_complexity 1 93 0 2972 250 103 31 chr13 108108031 108110112 -11634786 - L1M1 LINE L1 -4070 3036 1116 4969 132 13 75 chr13 108110171 108111245 -11633653 - Ricksha_b DNA DNA -8 1246 239 1996 138 24 0 chr13 108111268 108111565 -11633333 - AluSx SINE Alu -8 304 1 416 167 89 11 chr13 108111570 108111660 -11633238 - Ricksha_b DNA DNA -1155 99 3 2677 220 76 27 chr13 108111667 108112545 -11632353 - L1M1 LINE L1 -6102 928 8 195 326 0 0 chr13 108113324 108113373 -11631525 + L2 LINE L2 3244 3292 -21 2057 137 17 0 chr13 108114194 108114486 -11630412 - AluSx SINE Alu -15 297 1 1565 140 21 0 chr13 108114487 108114723 -11630175 - AluSp SINE Alu -70 243 3 283 242 48 105 chr13 108114843 108114967 -11629931 - MIR SINE MIR -57 151 35 1167 196 61 40 chr13 108115032 108115358 -11629540 + MER2 DNA MER2_type 13 345 0 197 323 16 0 chr13 108115400 108115462 -11629436 - L2 LINE L2 -86 3227 3165 2147 118 0 7 chr13 108115462 108115794 -11629104 + AluSx SINE Alu 1 312 0 344 366 143 17 chr13 108117800 108118213 -11626685 - L2 LINE L2 -649 2665 2201 266 348 61 9 chr13 108118424 108118539 -11626359 - L2 LINE L2 -10 3303 3183 228 244 44 22 chr13 108121613 108121703 -11623195 - MLT1J LTR MaLR -331 180 89 483 256 77 50 chr13 108122684 108123024 -11621874 - Charlie2a DNA MER1_type -19 2843 2495 806 291 36 0 chr13 108123077 108123297 -11621601 + MIR SINE MIR 14 241 -21 1070 245 83 23 chr13 108123303 108123773 -11621125 - Charlie2a DNA MER1_type -677 2185 1688 562 276 55 0 chr13 108123780 108123979 -11620919 - L1ME1 LINE L1 -5 6161 5952 984 193 109 79 chr13 108123983 108124377 -11620521 - L1ME1 LINE L1 -500 5664 5259 487 214 138 19 chr13 108124395 108124554 -11620344 - Charlie2a DNA MER1_type -1194 1668 1491 805 256 114 58 chr13 108124646 108125266 -11619632 - Charlie2b DNA MER1_type -2122 660 6 278 105 57 38 chr13 108125497 108125602 -11619296 + (TA)n Simple_repeat Simple_repeat 2 108 0 216 286 0 0 chr13 108125683 108125732 -11619166 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 185 180 20 0 chr13 108127938 108127988 -11616910 + (TA)n Simple_repeat Simple_repeat 2 52 0 465 231 30 22 chr13 108129145 108129279 -11615619 + MIR SINE MIR 127 261 -1 273 275 69 50 chr13 108129379 108129539 -11615359 - L3 LINE CR1 -608 969 807 334 137 14 14 chr13 108129543 108129616 -11615282 + CT-rich Low_complexity Low_complexity 4 76 0 312 280 93 0 chr13 108129790 108129908 -11614990 - L3 LINE CR1 -985 592 464 663 39 0 0 chr13 108130177 108130254 -11614644 - AluY SINE Alu -186 125 49 1452 112 0 19 chr13 108130254 108130468 -11614430 + AluY SINE Alu 102 311 0 220 225 0 0 chr13 108130858 108130898 -11614000 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 29 0 0 0 chr13 108131697 108131726 -11613172 + AT_rich Low_complexity Low_complexity 1 29 0 1725 126 31 58 chr13 108131916 108132210 -11612688 + AluJo SINE Alu 11 296 -16 414 321 49 6 chr13 108132219 108132381 -11612517 - MIR SINE MIR -74 188 20 1377 190 44 82 chr13 108132850 108133255 -11611643 + MLT1B LTR MaLR 1 390 0 196 318 47 37 chr13 108133777 108133884 -11611014 + MIR SINE MIR 42 149 -113 598 164 125 0 chr13 108134387 108134491 -11610407 + FLAM_C SINE Alu 1 117 -16 195 100 0 0 chr13 108134895 108134925 -11609973 + (CA)n Simple_repeat Simple_repeat 2 31 0 420 20 0 0 chr13 108135129 108135178 -11609720 + (TG)n Simple_repeat Simple_repeat 1 49 0 32 0 0 0 chr13 108135226 108135258 -11609640 + AT_rich Low_complexity Low_complexity 1 32 0 1905 113 128 76 chr13 108136042 108136449 -11608449 + MSTA LTR MaLR 1 428 0 510 278 127 5 chr13 108137112 108137317 -11607581 + MIR SINE MIR 28 257 -5 4463 98 2 14 chr13 108137682 108138323 -11606575 + LTR10E LTR ERV1 1 633 0 245 211 0 19 chr13 108138341 108138393 -11606505 + T-rich Low_complexity Low_complexity 1 51 0 447 214 119 94 chr13 108139025 108139184 -11605714 - L3 LINE CR1 -5 1572 1410 2129 123 10 0 chr13 108139647 108139940 -11604958 + AluSx SINE Alu 1 296 -16 6041 88 2 0 chr13 108140498 108141371 -11603527 - L1PA13 LINE L1 0 6163 5289 539 135 0 0 chr13 108141367 108141456 -11603442 + L1P LINE L1 5141 5229 -917 * 397 259 69 15 chr13 108142229 108142360 -11602538 + MIR SINE MIR 18 155 -107 1924 140 31 0 chr13 108142429 108142722 -11602176 - AluJb SINE Alu -9 303 2 198 0 0 0 chr13 108142932 108142954 -11601944 + (CAA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr13 108143069 108143090 -11601808 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr13 108143385 108143417 -11601481 + AT_rich Low_complexity Low_complexity 1 32 0 575 308 62 21 chr13 108144328 108144553 -11600345 + MIR SINE MIR 29 260 -2 22 0 0 0 chr13 108146297 108146319 -11598579 + AT_rich Low_complexity Low_complexity 1 22 0 197 375 27 49 chr13 108148832 108149016 -11595882 - MIR3 SINE MIR -13 195 16 181 346 115 0 chr13 108149561 108149665 -11595233 - MIR SINE MIR -61 201 86 410 270 224 0 chr13 108149790 108149942 -11594956 - MER5A DNA MER1_type 0 189 4 5412 20 0 3 chr13 108151337 108152025 -11592873 + L1PA3 LINE L1 5482 6167 0 1226 220 166 17 chr13 108152783 108153192 -11591706 + L1ME3A LINE L1 5548 6017 -153 189 0 0 0 chr13 108153216 108153237 -11591661 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 984 224 0 0 chr13 108153925 108154099 -11590799 - AluJ SINE Alu -30 282 109 680 180 0 0 chr13 108154130 108154241 -11590657 - AluJ SINE Alu -198 114 4 244 290 91 70 chr13 108154275 108154461 -11590437 + MLT1I LTR MaLR 100 289 -120 633 205 137 6 chr13 108154617 108154778 -11590120 + MLT1B LTR MaLR 3 184 -206 678 296 108 32 chr13 108154806 108154866 -11590032 - L1MEc LINE L1 -3898 2498 2444 2082 118 64 12 chr13 108154866 108155212 -11589686 - THE1B LTR MaLR 0 364 1 678 296 108 32 chr13 108155212 108155587 -11589311 - L1MEc LINE L1 -3952 2444 2030 390 307 69 41 chr13 108155728 108156478 -11588420 - L1MEc LINE L1 -4439 1776 1027 1348 144 0 0 chr13 108157736 108157931 -11586967 + AluSg/x SINE Alu 108 302 -10 21 0 0 0 chr13 108158357 108158378 -11586520 + AT_rich Low_complexity Low_complexity 1 21 0 2452 81 35 6 chr13 108159013 108159361 -11585537 - THE1B LTR MaLR -5 359 2 2898 179 26 5 chr13 108159981 108160561 -11584337 + L1MB2 LINE L1 5577 6168 -3 256 211 70 0 chr13 108161002 108161059 -11583839 + L3 LINE CR1 1513 1573 -4 22 0 0 0 chr13 108162212 108162234 -11582664 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 108162270 108162291 -11582607 + AT_rich Low_complexity Low_complexity 1 21 0 530 316 52 5 chr13 108162328 108162521 -11582377 + MIR SINE MIR 30 231 -31 199 260 182 0 chr13 108162879 108162956 -11581942 + L2 LINE L2 3223 3313 0 569 194 16 0 chr13 108163053 108163182 -11581716 - MER53 DNA DNA 0 189 59 530 164 75 20 chr13 108163178 108163324 -11581574 - MER53 DNA DNA -35 154 1 * 221 210 16 0 chr13 108163906 108163968 -11580930 + CT-rich Low_complexity Low_complexity 2 64 0 197 33 33 0 chr13 108164676 108164706 -11580192 + (TC)n Simple_repeat Simple_repeat 2 32 0 221 293 0 61 chr13 108164878 108164960 -11579938 - L2 LINE L2 0 3272 3196 220 283 135 59 chr13 108165264 108165568 -11579330 - L2 LINE L2 -435 2879 2553 446 244 45 70 chr13 108166348 108166504 -11578394 - MIR SINE MIR -54 208 57 37 32 0 16 chr13 108166712 108166753 -11578145 + AT_rich Low_complexity Low_complexity 1 42 -19 665 216 0 0 chr13 108166753 108166878 -11578020 - FLAM_C SINE Alu -6 127 3 37 32 0 16 chr13 108166878 108166898 -11578000 + AT_rich Low_complexity Low_complexity 42 61 0 21 36 0 0 chr13 108167863 108167891 -11577007 + AT_rich Low_complexity Low_complexity 1 28 0 302 270 22 22 chr13 108168347 108168436 -11576462 - MIR SINE MIR -10 252 164 2331 217 88 0 chr13 108168824 108169345 -11575553 + MLT1F1 LTR MaLR 1 567 0 887 249 13 13 chr13 108170157 108170382 -11574516 + MIR SINE MIR 35 259 -3 236 298 64 32 chr13 108171016 108171110 -11573788 - L2 LINE L2 -8 3264 3168 1796 160 16 47 chr13 108171226 108171545 -11573353 + AluSx SINE Alu 1 309 -3 559 306 91 0 chr13 108171597 108171816 -11573082 + L1ME2 LINE L1 325 563 -6044 759 159 9 0 chr13 108171817 108171930 -11572968 + FRAM SINE Alu 35 148 -28 351 0 0 0 chr13 108171931 108171970 -11572928 + (CA)n Simple_repeat Simple_repeat 2 40 0 226 219 14 41 chr13 108172019 108172092 -11572806 - L1M4 LINE L1 -2271 3875 3805 1125 221 88 53 chr13 108172133 108172512 -11572386 + L1M4 LINE L1 3881 4282 -1864 1749 60 14 0 chr13 108172512 108172729 -11572169 - AluY SINE Alu -6 305 86 1125 221 88 53 chr13 108172729 108172838 -11572060 + L1M4 LINE L1 4282 4386 -1760 265 275 43 7 chr13 108172840 108172978 -11571920 + L1ME2 LINE L1 1426 1568 -4858 691 201 54 50 chr13 108173074 108173125 -11571773 + L1ME2 LINE L1 4670 4719 -1707 1857 206 8 3 chr13 108173125 108173485 -11571413 + MLT1A1 LTR MaLR 3 364 -1 691 201 54 50 chr13 108173485 108173711 -11571187 + L1ME2 LINE L1 4719 4948 -1478 723 220 75 0 chr13 108173717 108173903 -11570995 - MER3 DNA MER1_type -6 203 4 1631 150 57 71 chr13 108173973 108174339 -11570559 - THE1B LTR MaLR 0 364 4 11227 103 13 1 chr13 108174342 108175904 -11568994 - THE1B-int LTR MaLR 0 1580 1 1842 138 55 32 chr13 108175904 108176251 -11568647 - THE1B LTR MaLR 0 364 10 1976 260 82 22 chr13 108176288 108177633 -11567265 + L1ME2 LINE L1 5040 6614 0 542 286 34 6 chr13 108177850 108178028 -11566870 - MIR SINE MIR -10 252 70 842 203 46 110 chr13 108178788 108179178 -11565720 + MLT1B LTR MaLR 11 375 -15 261 297 41 55 chr13 108179274 108179419 -11565479 - MIR SINE MIR -14 248 106 375 352 42 21 chr13 108181527 108181669 -11563229 + L2 LINE L2 3128 3272 0 2200 120 16 44 chr13 108182191 108182575 -11562323 - THE1C LTR MaLR 0 375 3 861 159 0 0 chr13 108182800 108182932 -11561966 - FLAM_C SINE Alu -1 132 1 203 292 22 11 chr13 108183207 108183296 -11561602 + CT-rich Low_complexity Low_complexity 4 93 0 281 125 21 0 chr13 108185016 108185064 -11559834 - MLT1D LTR MaLR 0 505 457 2547 58 0 3 chr13 108185087 108185397 -11559501 + AluY SINE Alu 1 309 -2 2046 127 3 0 chr13 108185401 108185693 -11559205 + AluY SINE Alu 1 293 -18 481 0 0 0 chr13 108185693 108185751 -11559147 - L1P2 LINE L1 -687 5468 5411 186 71 0 0 chr13 108185754 108185782 -11559116 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1944 207 61 62 chr13 108185802 108186429 -11558469 - MER92B LTR ERV1 -10 626 1 1132 211 108 55 chr13 108186429 108186864 -11558034 - MLT1D LTR MaLR -45 460 3 2577 178 90 63 chr13 108186963 108187171 -11557727 - Charlie1a DNA MER1_type -1306 1455 1254 728 176 8 0 chr13 108187171 108187290 -11557608 + FLAM_A SINE Alu 2 121 -12 2577 178 90 63 chr13 108187290 108187498 -11557400 - Charlie1a DNA MER1_type -1507 1254 1053 2251 113 3 0 chr13 108187498 108187799 -11557099 - AluSp SINE Alu -11 302 1 2577 178 90 63 chr13 108187799 108188211 -11556687 - Charlie1a DNA MER1_type -1708 1053 603 1352 211 59 71 chr13 108188209 108188715 -11556183 + Charlie1a DNA MER1_type 103 602 -853 * 394 273 16 25 chr13 108188710 108188831 -11556067 - Charlie1a DNA MER1_type -1335 120 1 * 238 297 174 0 chr13 108189144 108189282 -11555616 + MIR SINE MIR 86 247 -15 244 167 19 0 chr13 108189909 108189963 -11554935 - Alu SINE Alu -1 301 247 2311 71 20 7 chr13 108190244 108190538 -11554360 + AluSq SINE Alu 1 298 -15 214 183 133 33 chr13 108193707 108193767 -11551131 + MER5B DNA MER1_type 106 171 -7 1022 284 142 2 chr13 108194089 108194526 -11550372 + MLT1J LTR MaLR 3 500 -11 2593 50 0 0 chr13 108195160 108195463 -11549435 + AluY SINE Alu 1 303 -8 297 75 0 0 chr13 108197207 108197247 -11547651 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1414 216 47 20 chr13 108197247 108197544 -11547354 - AluJo SINE Alu -7 305 1 4453 156 10 8 chr13 108197852 108198683 -11546215 - L1MA4 LINE L1 -211 6089 5258 25 75 0 0 chr13 108198857 108198910 -11545988 + AT_rich Low_complexity Low_complexity 1 53 0 303 350 0 48 chr13 108199199 108199385 -11545513 - L1M4 LINE L1 -1797 4349 4173 11485 30 12 0 chr13 108199854 108202016 -11542882 - L1PA4 LINE L1 0 6155 3979 34 0 0 0 chr13 108202340 108202374 -11542524 + AT_rich Low_complexity Low_complexity 1 34 0 767 219 0 0 chr13 108202493 108202662 -11542236 + FRAM SINE Alu 1 169 0 24 0 0 0 chr13 108202663 108202687 -11542211 + AT_rich Low_complexity Low_complexity 1 24 0 181 245 0 20 chr13 108203571 108203620 -11541278 + L2 LINE L2 3257 3304 -9 540 326 30 13 chr13 108203640 108203876 -11541022 + MIR SINE MIR 23 262 0 1170 131 0 0 chr13 108204226 108204386 -11540512 + AluJb SINE Alu 131 290 -22 325 345 64 30 chr13 108204494 108204824 -11540074 - HAL1b LINE L1 -680 668 328 2262 197 61 24 chr13 108205741 108206280 -11538618 + MER89 LTR ERV1 1 559 0 2350 95 0 0 chr13 108206482 108206786 -11538112 + AluSx SINE Alu 1 304 -8 254 329 35 0 chr13 108207239 108207324 -11537574 + MIR SINE MIR 64 151 -111 670 279 28 0 chr13 108207382 108207561 -11537337 - MIR SINE MIR -61 201 18 271 327 29 0 chr13 108209037 108209141 -11535757 + MIR SINE MIR 123 229 -33 634 280 47 19 chr13 108209912 108210126 -11534772 - MIR SINE MIR -11 251 32 22 35 0 0 chr13 108211148 108211177 -11533721 + AT_rich Low_complexity Low_complexity 1 29 0 437 132 0 0 chr13 108211254 108211322 -11533576 + MLT2B3 LTR ERVL 1 68 -486 21 0 0 0 chr13 108211326 108211347 -11533551 + AT_rich Low_complexity Low_complexity 1 21 0 1706 190 57 71 chr13 108211444 108211922 -11532976 + MLT2B3 LTR ERVL 77 547 -7 467 254 51 14 chr13 108211926 108212064 -11532834 - MIR SINE MIR -97 165 23 538 263 76 52 chr13 108212566 108212817 -11532081 + Charlie8 DNA MER1_type 1 257 -2160 301 361 8 8 chr13 108213037 108213159 -11531739 + MIR SINE MIR 20 141 -121 950 201 18 5 chr13 108213320 108213544 -11531354 - L1MC4 LINE L1 -644 7398 7172 887 246 70 114 chr13 108213916 108214441 -11530457 + L2 LINE L2 2812 3313 0 2304 102 0 0 chr13 108214605 108214900 -11529998 - AluSc SINE Alu -14 295 1 24 32 0 0 chr13 108216779 108216810 -11528088 + AT_rich Low_complexity Low_complexity 1 31 0 1423 115 43 0 chr13 108216810 108217063 -11527835 + L1MA9 LINE L1 6048 6311 -1 239 298 99 8 chr13 108217725 108217846 -11527052 - MIR SINE MIR -62 200 69 272 291 89 73 chr13 108218026 108218205 -11526693 - L2 LINE L2 -7 3306 3125 23 0 0 0 chr13 108219411 108219434 -11525464 + AT_rich Low_complexity Low_complexity 1 23 0 3337 41 0 7 chr13 108219453 108219865 -11525033 - L1PA3 LINE L1 0 6155 5747 867 279 212 44 chr13 108220022 108221374 -11523524 - L2 LINE L2 -2 3311 1604 3402 180 26 13 chr13 108221374 108222073 -11522825 + L1PB4 LINE L1 5443 6150 -6 867 279 212 44 chr13 108222073 108222330 -11522568 - L2 LINE L2 -1709 1604 1391 240 331 59 78 chr13 108222938 108223376 -11521522 + L2 LINE L2 2045 2474 -840 970 307 95 30 chr13 108224284 108224789 -11520109 + L3 LINE CR1 948 1485 -92 203 374 91 13 chr13 108224822 108225052 -11519846 + L3b LINE CR1 1279 1526 -57 217 169 0 68 chr13 108226481 108226540 -11518358 + MIR SINE MIR 158 212 -50 206 288 0 38 chr13 108226680 108226716 -11518182 + CT-rich Low_complexity Low_complexity 1 37 -40 1566 145 0 0 chr13 108226716 108226943 -11517955 - AluJb SINE Alu -3 309 83 206 288 0 38 chr13 108226943 108226986 -11517912 + CT-rich Low_complexity Low_complexity 37 77 0 1370 228 33 17 chr13 108227422 108227781 -11517117 - MLT1A1 LTR MaLR 0 365 1 1866 158 24 12 chr13 108228499 108228840 -11516058 - L1MC1 LINE L1 0 6333 5989 360 326 52 14 chr13 108230068 108230275 -11514623 - MIR SINE MIR -48 214 6 617 299 182 32 chr13 108232008 108232410 -11512488 + L2 LINE L2 2841 3302 -11 375 23 0 0 chr13 108232785 108232829 -11512069 + (TG)n Simple_repeat Simple_repeat 1 44 0 2107 107 7 3 chr13 108233594 108233892 -11511006 + AluSx SINE Alu 1 299 -13 26 0 0 0 chr13 108234670 108234696 -11510202 + AT_rich Low_complexity Low_complexity 1 26 0 376 294 97 36 chr13 108236426 108236705 -11508193 - L1M4 LINE L1 -1273 4873 4578 22 0 0 0 chr13 108236750 108236772 -11508126 + AT_rich Low_complexity Low_complexity 1 22 0 667 245 77 5 chr13 108237393 108237589 -11507309 - MER20 DNA MER1_type -4 215 6 1827 214 16 23 chr13 108239318 108239757 -11505141 - MER63B DNA MER1_type 0 436 1 230 97 0 0 chr13 108240137 108240168 -11504730 - U2 snRNA snRNA -157 31 1 888 189 34 6 chr13 108240601 108240776 -11504122 - MER5A DNA MER1_type -3 186 7 466 258 30 8 chr13 108241106 108241238 -11503660 + MER5B DNA MER1_type 1 135 -43 385 267 0 84 chr13 108241251 108241382 -11503516 - MER5B DNA MER1_type -58 120 1 290 245 75 57 chr13 108241382 108241485 -11503413 + L2 LINE L2 3189 3293 -20 231 209 176 33 chr13 108241779 108241870 -11503028 + MER58B DNA MER1_type 110 213 -128 744 197 14 0 chr13 108241898 108242040 -11502858 + MER58B DNA MER1_type 198 341 0 2264 171 93 17 chr13 108242940 108243414 -11501484 + MER67D LTR ERV1 1 510 -4 742 228 61 83 chr13 108243429 108243824 -11501074 + MLT1B LTR MaLR 1 386 -4 264 337 22 43 chr13 108243936 108244120 -11500778 + L2 LINE L2 2915 3094 -178 2234 134 40 3 chr13 108244208 108244559 -11500339 - THE1B LTR MaLR 0 364 1 2129 60 7 18 chr13 108245004 108245332 -11499566 + AluY SINE Alu 1 325 0 1760 108 13 0 chr13 108247097 108247329 -11497569 - AluSq SINE Alu -13 300 66 223 267 0 0 chr13 108247471 108247516 -11497382 + (CATA)n Simple_repeat Simple_repeat 3 47 0 257 322 7 41 chr13 108247729 108247875 -11497023 + LTR33 LTR ERVL 38 178 -343 790 204 0 5 chr13 108248254 108248440 -11496458 - L1MA4 LINE L1 -3 6297 6113 1944 123 3 7 chr13 108249248 108249567 -11495331 - AluSx SINE Alu 0 318 1 1477 34 0 0 chr13 108249602 108249778 -11495120 + AluY SINE Alu 136 311 0 242 149 43 0 chr13 108250263 108250310 -11494588 - MER67D LTR ERV1 0 514 466 4106 145 81 9 chr13 108250311 108250973 -11493925 - L1PA16 LINE L1 -3 6163 5431 1772 164 35 32 chr13 108250973 108251346 -11493552 + THE1C LTR MaLR 1 374 -1 4106 145 81 9 chr13 108251346 108251489 -11493409 - L1PA16 LINE L1 -735 5431 5300 1754 217 35 33 chr13 108251519 108252044 -11492854 - L1 LINE L1 -820 5326 4797 2199 108 0 3 chr13 108252044 108252353 -11492545 - AluSq SINE Alu 0 308 1 1754 217 35 33 chr13 108252353 108252403 -11492495 - L1 LINE L1 -1349 4797 4749 1826 187 59 26 chr13 108252430 108252852 -11492046 - MER67D LTR ERV1 -78 436 1 337 295 158 0 chr13 108253075 108253170 -11491728 + L2 LINE L2 3152 3261 -11 481 271 84 42 chr13 108253251 108253465 -11491433 + MIR SINE MIR 10 232 -30 291 308 48 102 chr13 108254883 108255198 -11489700 + L2 LINE L2 2883 3180 -92 297 280 16 16 chr13 108255277 108255402 -11489496 + MLT1J2 LTR MaLR 42 166 -284 326 313 9 9 chr13 108255653 108255765 -11489133 + L2 LINE L2 3202 3313 0 398 276 210 22 chr13 108256188 108256369 -11488529 - MIR SINE MIR -11 251 37 246 341 16 16 chr13 108257028 108257151 -11487747 - MIR SINE MIR -119 143 21 231 340 183 0 chr13 108258195 108258348 -11486550 - MER5A DNA MER1_type -2 187 7 870 200 27 5 chr13 108258362 108258547 -11486351 - MER5A DNA MER1_type 0 189 1 4182 82 20 20 chr13 108258858 108259464 -11485434 - L1PA8 LINE L1 0 6172 5567 21 0 0 0 chr13 108260849 108260870 -11484028 + AT_rich Low_complexity Low_complexity 1 21 0 317 323 25 122 chr13 108261675 108261994 -11482904 - L2 LINE L2 -2 3270 2983 32 0 0 0 chr13 108262261 108262293 -11482605 + AT_rich Low_complexity Low_complexity 1 32 0 225 342 113 9 chr13 108263956 108264178 -11480720 + L2 LINE L2 2577 2821 -493 224 314 66 91 chr13 108264296 108264615 -11480283 + L2 LINE L2 2945 3255 -17 25 0 0 0 chr13 108264615 108264640 -11480258 + AT_rich Low_complexity Low_complexity 1 25 0 204 239 30 45 chr13 108265281 108265348 -11479550 + (TTGGGG)n Simple_repeat Simple_repeat 1 66 0 311 284 0 0 chr13 108266471 108266552 -11478346 + (TG)n Simple_repeat Simple_repeat 2 82 0 2532 125 25 37 chr13 108269154 108269587 -11475311 + MSTA LTR MaLR 1 428 0 192 300 214 19 chr13 108274473 108274683 -11470215 + L3 LINE CR1 1303 1553 -24 24 0 0 0 chr13 108275138 108275162 -11469736 + AT_rich Low_complexity Low_complexity 1 24 0 180 196 161 18 chr13 108276812 108276868 -11468030 + MIR SINE MIR 79 142 -120 495 261 86 19 chr13 108277146 108277325 -11467573 - MIR SINE MIR -40 222 34 231 36 0 0 chr13 108277377 108277405 -11467493 + (CA)n Simple_repeat Simple_repeat 1 28 0 321 276 23 0 chr13 108277611 108277698 -11467200 + L2 LINE L2 3221 3309 -4 836 191 186 62 chr13 108279361 108279733 -11465165 + LTR37A LTR ERV1 6 423 -3 397 182 8 107 chr13 108280215 108280336 -11464562 - MLT1E2 LTR MaLR -517 109 1 267 392 6 33 chr13 108280810 108280991 -11463907 + L2 LINE L2 2603 2778 -536 482 230 13 53 chr13 108281267 108281419 -11463479 - MER61D LTR ERV1 -12 489 344 839 171 11 185 chr13 108281431 108281718 -11463180 - LTR28 LTR ERV1 -840 180 1 336 248 133 0 chr13 108282043 108282156 -11462742 - MIR SINE MIR -66 196 69 1773 216 37 55 chr13 108282287 108282801 -11462097 - MLT1D LTR MaLR 0 505 1 319 302 19 0 chr13 108285724 108285830 -11459068 + CT-rich Low_complexity Low_complexity 1 108 0 225 364 76 8 chr13 108285918 108286050 -11458848 - L3 LINE CR1 -41 1536 1396 204 40 0 0 chr13 108286583 108286608 -11458290 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 344 284 162 34 chr13 108287693 108287897 -11457001 - MIR SINE MIR -17 245 16 539 250 45 11 chr13 108287915 108288091 -11456807 + Charlie4 DNA MER1_type 17 198 -1763 298 175 0 68 chr13 108288316 108288419 -11456479 + T-rich Low_complexity Low_complexity 6 101 0 214 325 26 26 chr13 108289092 108289128 -11455770 - L2 LINE L2 -1 3271 3236 2456 53 3 0 chr13 108289128 108289429 -11455469 - AluY SINE Alu -9 302 1 214 325 26 26 chr13 108289429 108289469 -11455429 - L2 LINE L2 -35 3237 3195 21 0 0 0 chr13 108289515 108289536 -11455362 + AT_rich Low_complexity Low_complexity 1 21 0 572 241 12 47 chr13 108289919 108290091 -11454807 + MIR3 SINE MIR 42 207 -1 1563 185 6 46 chr13 108291274 108291599 -11453299 - AluJo SINE Alu 0 312 1 437 255 234 0 chr13 108293383 108293524 -11451374 - MER5A DNA MER1_type 0 189 16 1394 146 23 0 chr13 108293613 108293832 -11451066 + AluSg/x SINE Alu 84 307 -5 258 283 0 0 chr13 108294268 108294328 -11450570 - tRNA-Ile-ATT tRNA tRNA -12 65 6 671 239 48 21 chr13 108295496 108295684 -11449214 - MER20 DNA MER1_type -1 218 26 373 237 70 37 chr13 108295907 108296109 -11448789 - L1ME LINE L1 -662 5502 5299 246 230 33 14 chr13 108296631 108296746 -11448152 + L1ME3A LINE L1 5829 5948 -222 330 305 0 0 chr13 108297736 108297818 -11447080 + L2 LINE L2 3230 3311 -2 180 0 0 0 chr13 108297818 108297838 -11447060 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 191 399 45 15 chr13 108298198 108298331 -11446567 + L2 LINE L2 2222 2358 -956 262 304 139 38 chr13 108302194 108302431 -11442467 + L2 LINE L2 2150 2410 -904 24 77 0 0 chr13 108302904 108302956 -11441942 + AT_rich Low_complexity Low_complexity 1 52 0 255 308 135 15 chr13 108302988 108303121 -11441777 - MIR3 SINE MIR -47 161 13 287 349 41 15 chr13 108303467 108303662 -11441236 - L2 LINE L2 -372 2942 2743 421 131 60 12 chr13 108303662 108303746 -11441152 - LTR1 LTR ERV1 -198 587 500 190 274 32 42 chr13 108303758 108303853 -11441045 - L2 LINE L2 -594 2720 2627 7252 184 53 10 chr13 108303859 108305281 -11439617 - HUERS-P2 LTR ERV1 -1385 1703 220 426 252 16 24 chr13 108305316 108305443 -11439455 - HUERS-P2 LTR ERV1 -2962 126 1 3893 149 50 60 chr13 108305443 108306236 -11438662 - LTR1 LTR ERV1 0 785 1 503 91 78 0 chr13 108306236 108306313 -11438585 - LTR8 LTR ERV1 -608 83 1 221 239 56 28 chr13 108306320 108306391 -11438507 - L2 LINE L2 -978 2336 2264 198 333 128 28 chr13 108306530 108306607 -11438291 - L2 LINE L2 -1152 2162 2094 2110 103 7 7 chr13 108306607 108306899 -11437999 + AluSx SINE Alu 2 293 -19 198 333 128 28 chr13 108306899 108306962 -11437936 - L2 LINE L2 -1220 2094 2008 1716 143 4 18 chr13 108307628 108307907 -11436991 + AluSx SINE Alu 6 280 -32 216 117 83 17 chr13 108308077 108308137 -11436761 + T-rich Low_complexity Low_complexity 2 65 0 224 309 150 34 chr13 108308304 108308511 -11436387 - L2 LINE L2 -68 3245 3015 1609 273 97 9 chr13 108310151 108310697 -11434201 + L2 LINE L2 1856 2449 -865 261 237 0 6 chr13 108310728 108310803 -11434095 - MLT1A1 LTR MaLR -12 375 294 1494 157 27 10 chr13 108310817 108311117 -11433781 - L1MA4 LINE L1 -24 6276 5972 210 37 0 0 chr13 108311292 108311319 -11433579 + (TA)n Simple_repeat Simple_repeat 1 27 0 255 275 30 102 chr13 108311326 108311357 -11433541 + MER58C DNA MER1_type 57 89 -2331 1927 105 0 51 chr13 108311357 108311535 -11433363 - AluSg SINE Alu -12 298 141 2455 72 7 3 chr13 108311535 108311841 -11433057 - AluY SINE Alu -4 307 1 1927 105 0 51 chr13 108311841 108311976 -11432922 - AluSg SINE Alu -169 141 1 255 275 30 102 chr13 108311976 108312023 -11432875 + MER58C DNA MER1_type 89 138 -2282 414 39 0 0 chr13 108312023 108312075 -11432823 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 275 30 102 chr13 108312075 108312162 -11432736 + MER58C DNA MER1_type 138 211 -4 1856 127 3 107 chr13 108312252 108312599 -11432299 - AluSq SINE Alu -1 312 2 184 349 0 0 chr13 108312967 108313030 -11431868 - L2 LINE L2 0 3272 3210 * 224 217 0 0 chr13 108312985 108313031 -11431867 - MIR SINE MIR -12 250 205 1169 163 88 4 chr13 108314641 108314892 -11430006 - Tigger7 DNA MER2_type -6 2481 2210 799 264 45 18 chr13 108315039 108315372 -11429526 + MER41E LTR ERV1 166 507 -5 341 158 158 0 chr13 108315377 108315459 -11429439 - Tigger7 DNA MER2_type -273 2314 2220 3474 199 42 4 chr13 108315459 108316202 -11428696 - Tigger7 DNA MER2_type -1715 772 2 382 119 15 0 chr13 108316759 108316826 -11428072 + Tigger7 DNA MER2_type 2302 2369 -218 436 286 63 39 chr13 108318266 108318472 -11426426 - L2 LINE L2 -4 3309 3099 186 404 59 0 chr13 108318497 108318633 -11426265 - L2 LINE L2 -1675 1639 1496 571 219 42 13 chr13 108318726 108318924 -11425974 + MIR SINE MIR 2 262 0 376 179 217 0 chr13 108319369 108319475 -11425423 + MER34 LTR ERV1 382 510 -32 457 184 82 107 chr13 108320119 108320325 -11424573 + MER65A-int LTR ERV1 1528 1728 -4603 675 233 19 39 chr13 108320448 108320706 -11424192 + MER65A-int LTR ERV1 1859 2111 -2760 335 229 110 0 chr13 108320842 108320951 -11423947 + MER65A-int LTR ERV1 3268 3388 -1483 933 272 42 20 chr13 108320987 108321135 -11423763 + MER65A-int LTR ERV1 4125 4268 -603 2107 106 20 14 chr13 108321135 108321428 -11423470 + AluSg SINE Alu 12 306 -4 933 272 42 20 chr13 108321428 108321964 -11422934 + MER65A-int LTR ERV1 4268 4819 -52 1391 211 24 50 chr13 108322015 108322432 -11422466 + MER65A LTR ERV1 7 412 -33 21 0 0 0 chr13 108322432 108322453 -11422445 + AT_rich Low_complexity Low_complexity 1 21 0 1080 302 85 18 chr13 108322466 108323076 -11421822 - L1MC4 LINE L1 0 8042 7392 426 136 0 0 chr13 108323541 108323607 -11421291 + THE1B LTR MaLR 299 364 0 11383 109 5 0 chr13 108323607 108325180 -11419718 + THE1B-int LTR MaLR 1 1580 0 783 120 8 0 chr13 108325180 108325297 -11419601 + THE1B LTR MaLR 1 118 -246 252 299 41 10 chr13 108325295 108325392 -11419506 + MLT1C LTR MaLR 368 467 0 * 413 248 48 55 chr13 108325606 108325751 -11419147 - MIR SINE MIR -88 174 31 598 155 0 0 chr13 108325758 108325855 -11419043 + MLT2B3 LTR ERVL 1 97 -423 1459 271 7 39 chr13 108325958 108326372 -11418526 + MLT2B3 LTR ERVL 154 554 0 245 302 32 0 chr13 108327438 108327501 -11417397 - L3b LINE CR1 -2 1581 1517 370 259 17 0 chr13 108329497 108329613 -11415285 + L1ME4a LINE L1 5612 5729 -392 268 229 86 21 chr13 108329718 108329858 -11415040 + L1ME4a LINE L1 5778 5926 -195 233 128 0 0 chr13 108330003 108330042 -11414856 - L2 LINE L2 -4 3309 3271 22 35 0 0 chr13 108330776 108330805 -11414093 + AT_rich Low_complexity Low_complexity 1 29 0 233 91 45 0 chr13 108331372 108331416 -11413482 + (CCCA)n Simple_repeat Simple_repeat 3 48 0 1798 115 0 0 chr13 108332560 108332829 -11412069 - L1PA14 LINE L1 -5 6156 5888 273 275 148 13 chr13 108333222 108333371 -11411527 - MLT1H LTR MaLR -258 291 123 22 0 0 0 chr13 108334350 108334372 -11410526 + AT_rich Low_complexity Low_complexity 1 22 0 231 271 0 0 chr13 108334608 108334678 -11410220 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 1487 171 188 3 chr13 108334707 108335058 -11409840 - MLT2C2 LTR ERVL -48 416 1 333 292 85 15 chr13 108335448 108335578 -11409320 - MIR SINE MIR -28 234 96 324 333 100 0 chr13 108336034 108336154 -11408744 - MIR3 SINE MIR -1 207 76 202 388 0 0 chr13 108338166 108338246 -11406652 + MIR SINE MIR 71 150 -112 1088 174 52 0 chr13 108338337 108338567 -11406331 + L1MA4 LINE L1 6050 6291 -9 231 260 0 0 chr13 108339332 108339382 -11405516 - MIR3 SINE MIR -8 200 151 11777 194 44 57 chr13 108339628 108340079 -11404819 - L1MA3 LINE L1 -306 7061 6606 198 0 0 0 chr13 108340079 108340101 -11404797 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 11777 194 44 57 chr13 108340101 108340147 -11404751 - L1MA3 LINE L1 -761 6606 6561 757 103 0 0 chr13 108340147 108340254 -11404644 - L1PB1 LINE L1 -4 6147 6041 11777 194 44 57 chr13 108340254 108340269 -11404629 - L1MA3 LINE L1 -806 6561 6547 1852 121 3 82 chr13 108340269 108340608 -11404290 + AluSc SINE Alu 1 309 0 11777 194 44 57 chr13 108340608 108341145 -11403753 - L1MA3 LINE L1 -820 6547 6005 369 0 0 0 chr13 108341145 108341186 -11403712 + (TG)n Simple_repeat Simple_repeat 2 42 0 11777 194 44 57 chr13 108341186 108345827 -11399071 - L1MA3 LINE L1 -1362 6005 1426 2038 237 104 6 chr13 108345847 108346472 -11398426 - L1MA3 LINE L1 -6432 777 138 1142 215 14 28 chr13 108346474 108346762 -11398136 - MLT1A1 LTR MaLR -68 297 14 441 274 209 68 chr13 108346859 108347199 -11397699 + L2 LINE L2 2579 2966 -348 381 202 48 24 chr13 108347276 108347360 -11397538 - Tigger7 DNA MER2_type -1 2486 2401 280 108 108 14 chr13 108347458 108347532 -11397366 - Tigger7 DNA MER2_type -79 2408 2328 * 391 231 0 0 chr13 108347526 108347604 -11397294 - Tigger7 DNA MER2_type -655 78 1 344 284 34 40 chr13 108347848 108348024 -11396874 + MIR SINE MIR 88 262 0 264 163 0 0 chr13 108348122 108348171 -11396727 - MLT2B1 LTR ERVL 0 520 472 459 0 0 0 chr13 108348172 108348223 -11396675 + (CA)n Simple_repeat Simple_repeat 2 52 0 203 225 14 0 chr13 108348227 108348298 -11396600 + (TA)n Simple_repeat Simple_repeat 1 72 0 1386 219 140 41 chr13 108348330 108348745 -11396153 - MLT2B1 LTR ERVL -64 456 1 317 321 143 18 chr13 108348839 108348952 -11395946 + MIR SINE MIR 25 167 -95 195 100 0 0 chr13 108348952 108348982 -11395916 + (ATG)n Simple_repeat Simple_repeat 2 31 0 317 321 143 18 chr13 108348982 108349036 -11395862 + MIR SINE MIR 167 213 -49 318 26 0 0 chr13 108349172 108349211 -11395687 + (GA)n Simple_repeat Simple_repeat 2 40 0 2495 111 5 19 chr13 108349517 108349886 -11395012 + THE1B LTR MaLR 1 364 0 11239 113 10 1 chr13 108349890 108351451 -11393447 + THE1B-int LTR MaLR 5 1579 -1 2386 125 8 16 chr13 108351452 108351819 -11393079 + THE1B LTR MaLR 1 364 0 5117 175 41 72 chr13 108352415 108353598 -11391300 + L1MB1 LINE L1 3898 5116 -1073 1241 196 28 102 chr13 108353598 108353990 -11390908 + MLT1A1 LTR MaLR 1 363 -2 5117 175 41 72 chr13 108353990 108354441 -11390457 + L1MB1 LINE L1 5116 5579 -610 1712 185 10 7 chr13 108354441 108354744 -11390154 + AluJo SINE Alu 1 304 -8 5117 175 41 72 chr13 108354744 108355565 -11389333 + L1MB1 LINE L1 5579 6161 -28 391 304 134 36 chr13 108355728 108355952 -11388946 + L2 LINE L2 3055 3300 -13 204 246 148 0 chr13 108356991 108357052 -11387846 - MIR SINE MIR -26 236 167 283 258 19 77 chr13 108357052 108357207 -11387691 + MLT2F LTR ERVL 1 146 -517 493 175 64 29 chr13 108357208 108357379 -11387519 + MLT1E3 LTR MaLR 50 274 -380 253 341 51 22 chr13 108357615 108357753 -11387145 - MIR SINE MIR -90 172 31 307 270 130 0 chr13 108357804 108357904 -11386994 + L2 LINE L2 3160 3272 0 389 295 0 0 chr13 108358468 108358563 -11386335 + L2 LINE L2 3207 3301 -12 217 220 0 20 chr13 108359819 108359869 -11385029 + MIR SINE MIR 95 143 -119 2354 187 8 44 chr13 108360419 108360917 -11383981 + MER66B LTR ERV1 5 484 -2 250 321 9 64 chr13 108361600 108361709 -11383189 + MIR SINE MIR 47 149 -113 2006 73 0 0 chr13 108362185 108362446 -11382452 + L1PA5 LINE L1 5894 6154 0 867 211 173 16 chr13 108362514 108362889 -11382009 + Charlie4a DNA MER1_type 43 476 -32 705 243 6 0 chr13 108365592 108365769 -11379129 + MER3 DNA MER1_type 2 179 -30 432 241 91 53 chr13 108366768 108367109 -11377789 + HAL1 LINE L1 958 1311 -1196 403 136 0 0 chr13 108367902 108367968 -11376930 + L1PA15 LINE L1 6100 6165 0 2514 63 0 0 chr13 108368167 108368468 -11376430 + AluY SINE Alu 1 301 -10 2186 105 0 3 chr13 108369157 108369453 -11375445 - AluY SINE Alu -16 295 1 184 410 8 17 chr13 108369472 108369589 -11375309 - MIR SINE MIR -74 134 19 251 318 0 0 chr13 108369850 108369916 -11374982 + MIR SINE MIR 84 149 -113 778 195 118 15 chr13 108370889 108371084 -11373814 - L2 LINE L2 0 3313 3099 632 175 18 0 chr13 108371087 108371201 -11373697 - MLT1B LTR MaLR -3 387 272 4731 151 64 18 chr13 108371213 108372611 -11372287 + L1MA6 LINE L1 4844 6296 -4 413 291 158 23 chr13 108372625 108372890 -11372008 - MLT1C LTR MaLR -99 368 68 198 379 132 6 chr13 108373153 108373327 -11371571 - L2 LINE L2 -314 2999 2804 204 167 0 42 chr13 108375427 108375475 -11369423 + A-rich Low_complexity Low_complexity 2 47 0 438 36 0 0 chr13 108375863 108375919 -11368979 + (CA)n Simple_repeat Simple_repeat 2 57 0 2737 3 0 0 chr13 108376739 108377035 -11367863 + AluYa5 SINE Alu 1 296 -15 249 333 74 37 chr13 108377076 108377211 -11367687 + MIR SINE MIR 10 149 -113 184 243 0 0 chr13 108377272 108377309 -11367589 + L2 LINE L2 3262 3298 -15 1946 166 42 16 chr13 108377875 108378304 -11366594 - L1MA8 LINE L1 -5 6286 5847 240 343 29 0 chr13 108378322 108378424 -11366474 - MIR SINE MIR -55 207 103 2015 112 45 0 chr13 108378427 108378714 -11366184 + AluSg SINE Alu 1 300 -10 678 227 11 23 chr13 108378974 108379150 -11365748 + MER20 DNA MER1_type 46 219 0 180 77 0 0 chr13 108379266 108379292 -11365606 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 250 329 27 74 chr13 108380604 108380753 -11364145 - L2 LINE L2 -1 3312 3171 206 212 15 30 chr13 108382717 108382783 -11362115 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1850 133 59 96 chr13 108383832 108384237 -11360661 + MLT1B LTR MaLR 1 390 0 203 189 0 0 chr13 108384474 108384511 -11360387 + (TAA)n Simple_repeat Simple_repeat 2 38 0 207 69 0 0 chr13 108384612 108384641 -11360257 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 2234 157 78 46 chr13 108385561 108386058 -11358840 - MER67D LTR ERV1 0 514 2 547 282 10 14 chr13 108386584 108386795 -11358103 + MIR SINE MIR 54 261 -1 281 321 92 8 chr13 108389302 108389433 -11355465 + L2 LINE L2 3172 3313 0 427 271 172 44 chr13 108389557 108390033 -11354865 - L1MC4a LINE L1 -1739 6069 5533 1996 147 13 0 chr13 108390761 108391060 -11353838 - AluSx SINE Alu -9 303 1 2130 231 15 6 chr13 108391810 108392278 -11352620 - MER70A LTR ERVL 0 472 1 269 260 202 0 chr13 108392359 108392463 -11352435 - L2 LINE L2 0 3313 3189 203 163 20 20 chr13 108395781 108395830 -11349068 - L3b LINE CR1 -229 1354 1306 202 271 0 34 chr13 108396566 108396625 -11348273 + CT-rich Low_complexity Low_complexity 2 58 0 21 0 0 0 chr13 108396643 108396664 -11348234 + AT_rich Low_complexity Low_complexity 1 21 0 458 120 0 53 chr13 108398033 108398108 -11346790 + AluS SINE Alu 1 71 -241 2090 132 62 8 chr13 108398440 108398796 -11346102 - THE1C LTR MaLR 0 375 1 10041 120 21 31 chr13 108398796 108400392 -11344506 - THE1C-int LTR MaLR 0 1580 1 2487 107 27 8 chr13 108400394 108400760 -11344138 - THE1C LTR MaLR -2 373 1 1437 161 102 9 chr13 108401843 108402167 -11342731 - L1MA8 LINE L1 -10 6281 5928 985 179 35 30 chr13 108402491 108402692 -11342206 + MER20 DNA MER1_type 3 204 -15 597 213 41 41 chr13 108403498 108403695 -11341203 + MLT1J1 LTR MaLR 1 197 -249 514 211 51 47 chr13 108403941 108404146 -11340752 + L1ME LINE L1 5452 5658 -463 22 0 0 0 chr13 108405346 108405368 -11339530 + AT_rich Low_complexity Low_complexity 1 22 0 275 288 73 84 chr13 108407724 108407915 -11336983 - MER115 DNA AcHobo -361 332 144 604 345 193 34 chr13 108408318 108410394 -11334504 - L2 LINE L2 -707 2607 201 2159 127 0 0 chr13 108410762 108411061 -11333837 - AluSg SINE Alu -11 299 1 21 0 0 0 chr13 108413084 108413105 -11331793 + AT_rich Low_complexity Low_complexity 1 21 0 519 201 75 29 chr13 108413224 108413398 -11331500 - L1 LINE L1 -3103 3043 2862 * 1213 268 13 3 chr13 108413394 108413708 -11331190 + L1 LINE L1 2528 2844 -3302 8366 202 22 21 chr13 108413719 108416162 -11328736 - L1 LINE L1 -3098 3750 1306 1639 150 30 78 chr13 108416162 108416535 -11328363 - THE1A LTR MaLR 0 355 1 8366 202 22 21 chr13 108416535 108416681 -11328217 - L1 LINE L1 -5542 1306 1162 1846 201 47 9 chr13 108416676 108417019 -11327879 - L1 LINE L1 -6425 424 69 * 208 152 0 0 chr13 108418463 108418496 -11326402 + MIR SINE MIR 220 252 -10 736 256 87 0 chr13 108418758 108418953 -11325945 - MER20 DNA MER1_type -7 212 1 207 385 17 0 chr13 108419119 108419240 -11325658 + MIR SINE MIR 34 155 -69 1009 267 30 24 chr13 108419500 108419837 -11325061 + MARNA DNA Mariner 158 496 -90 4558 298 67 37 chr13 108419965 108421009 -11323889 + L2 LINE L2 1064 2075 -1238 2306 149 36 5 chr13 108421009 108421424 -11323474 + MSTA LTR MaLR 1 428 0 4558 298 67 37 chr13 108421424 108422545 -11322353 + L2 LINE L2 2075 3298 -15 234 269 19 28 chr13 108423499 108423607 -11321291 + (TA)n Simple_repeat Simple_repeat 1 107 0 273 73 0 0 chr13 108423703 108423744 -11321154 - L1MA3 LINE L1 0 6305 6265 198 271 0 42 chr13 108424346 108424394 -11320504 - MER5B DNA MER1_type -70 108 63 229 177 0 32 chr13 108424734 108424796 -11320102 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 277 240 216 8 chr13 108425107 108425232 -11319666 - MLT1G1 LTR MaLR -153 389 239 4532 56 31 3 chr13 108425478 108426067 -11318831 + L1PA5 LINE L1 5547 6151 -3 321 256 117 0 chr13 108426174 108426311 -11318587 - MLT1G1 LTR MaLR -416 179 15 1479 241 16 3 chr13 108427251 108427566 -11317332 - Tigger7 DNA MER2_type -390 343 25 469 276 107 81 chr13 108427867 108428299 -11316599 + HAL1 LINE L1 932 1374 -1133 432 0 0 0 chr13 108428310 108428358 -11316540 + (CA)n Simple_repeat Simple_repeat 2 49 0 2663 234 85 26 chr13 108428425 108430203 -11314695 + L1MB7 LINE L1 4132 6039 -145 3474 145 98 13 chr13 108430235 108430465 -11314433 - L1MA5A LINE L1 0 6297 6088 1945 121 0 11 chr13 108430465 108430745 -11314153 + AluSx SINE Alu 24 300 -12 3474 145 98 13 chr13 108430745 108431191 -11313707 - L1MA5A LINE L1 -209 6088 5564 375 169 52 0 chr13 108431190 108431267 -11313631 + L1MB7 LINE L1 6023 6103 -81 * 260 148 66 0 chr13 108431328 108431389 -11313509 + L1MB8 LINE L1 6093 6157 -21 393 308 91 18 chr13 108431410 108431696 -11313202 + HAL1 LINE L1 1443 1749 -758 8321 41 17 0 chr13 108432171 108433864 -11311034 - L1PA4 LINE L1 -97 6058 4340 259 352 48 9 chr13 108434029 108434134 -11310764 + L2 LINE L2 3151 3259 -13 779 302 0 9 chr13 108434175 108434400 -11310498 - MER58A DNA MER1_type 0 224 2 291 294 129 29 chr13 108434880 108435050 -11309848 - MIR SINE MIR -11 251 65 292 345 115 10 chr13 108435167 108435376 -11309522 - L2 LINE L2 -216 3097 2867 * 403 366 99 8 chr13 108435361 108435604 -11309294 - L2 LINE L2 -411 2903 2639 1459 160 7 40 chr13 108435611 108435886 -11309012 + MLT2B1 LTR ERVL 1 266 -254 213 94 0 0 chr13 108435930 108435962 -11308936 + (GA)n Simple_repeat Simple_repeat 2 33 0 293 109 0 22 chr13 108435965 108436011 -11308887 + MLT2B1 LTR ERVL 472 516 -4 325 110 61 0 chr13 108436284 108436366 -11308532 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 221 349 73 33 chr13 108436701 108436973 -11307925 + L2 LINE L2 2018 2300 -1014 298 333 0 0 chr13 108438271 108438358 -11306540 - MIR SINE MIR -125 137 51 221 375 33 17 chr13 108438423 108438543 -11306355 + L2 LINE L2 3179 3300 -13 264 188 0 0 chr13 108438549 108438613 -11306285 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 190 326 22 22 chr13 108440051 108440143 -11304755 - MIR SINE MIR -170 92 1 23 0 0 0 chr13 108440439 108440462 -11304436 + AT_rich Low_complexity Low_complexity 1 23 0 273 57 0 0 chr13 108445058 108445093 -11299805 + (A)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr13 108445208 108445237 -11299661 + AT_rich Low_complexity Low_complexity 1 29 0 225 282 34 94 chr13 108445807 108445956 -11298942 - L2 LINE L2 -562 2752 2613 207 186 0 0 chr13 108446153 108446196 -11298702 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 477 263 144 16 chr13 108447396 108447590 -11297308 + MIR SINE MIR 44 262 0 22 0 0 0 chr13 108448132 108448154 -11296744 + AT_rich Low_complexity Low_complexity 1 22 0 228 405 72 0 chr13 108448286 108448397 -11296501 - L2 LINE L2 -18 3254 3136 248 186 34 0 chr13 108448452 108448511 -11296387 + CT-rich Low_complexity Low_complexity 1 61 0 1479 235 19 17 chr13 108448557 108448919 -11295979 - MLT1A1 LTR MaLR -2 363 1 1857 188 85 106 chr13 108448919 108449436 -11295462 - MLT1A1-int LTR MaLR 0 1735 1230 763 157 15 0 chr13 108449437 108449571 -11295327 - MLT1A1-int LTR MaLR -1598 137 2 586 132 11 0 chr13 108449573 108449664 -11295234 - MLT1A1 LTR MaLR 0 365 274 2642 108 11 0 chr13 108449665 108450036 -11294862 - THE1C LTR MaLR 0 375 1 7905 123 48 5 chr13 108450041 108451240 -11293658 - THE1C-int LTR MaLR -6 1574 324 293 127 0 18 chr13 108451347 108451402 -11293496 + L1MB2 LINE L1 6011 6064 -107 212 323 124 19 chr13 108451766 108451927 -11292971 - MIR SINE MIR -69 193 16 32 26 0 0 chr13 108452004 108452043 -11292855 + AT_rich Low_complexity Low_complexity 1 39 0 35 24 0 0 chr13 108453231 108453273 -11291625 + AT_rich Low_complexity Low_complexity 1 42 0 428 35 17 0 chr13 108453375 108453433 -11291465 + (CA)n Simple_repeat Simple_repeat 2 60 0 368 287 37 9 chr13 108455145 108455253 -11289645 - MIR SINE MIR -94 168 58 542 183 0 0 chr13 108455333 108455426 -11289472 - AluSg/x SINE Alu -25 284 192 207 260 24 8 chr13 108455868 108455991 -11288907 + (TATATG)n Simple_repeat Simple_repeat 6 130 0 239 176 88 0 chr13 108455991 108456059 -11288839 + L1MC4 LINE L1 6640 6713 -1329 320 218 46 35 chr13 108457431 108457518 -11287380 - L2 LINE L2 0 3313 3226 331 300 148 56 chr13 108457591 108457928 -11286970 - L2 LINE L2 -27 3286 2919 237 383 35 26 chr13 108457959 108458186 -11286712 - L2 LINE L2 -577 2737 2509 180 309 169 42 chr13 108458309 108458742 -11286156 - L2 LINE L2 -1904 1410 923 442 233 37 155 chr13 108461077 108461322 -11283576 + L1MEd LINE L1 1 216 -5903 606 262 84 60 chr13 108461535 108461985 -11282913 + L1MEd LINE L1 499 959 -5160 274 236 19 9 chr13 108464746 108464852 -11280046 - L1M4 LINE L1 -3188 2958 2852 342 0 0 0 chr13 108467295 108467333 -11277565 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2013 211 38 4 chr13 108468841 108469292 -11275606 - L1MB7 LINE L1 -16 6168 5703 2054 100 0 11 chr13 108469292 108469573 -11275325 + AluSq SINE Alu 1 278 -35 645 293 59 19 chr13 108470545 108470815 -11274083 + MLT1G LTR MaLR 10 290 -300 393 244 189 65 chr13 108470938 108471139 -11273759 + MLT1G LTR MaLR 370 595 0 214 270 0 16 chr13 108471306 108471369 -11273529 + CT-rich Low_complexity Low_complexity 4 65 0 1845 172 112 5 chr13 108473067 108473486 -11271412 - MLT2C2 LTR ERVL 0 464 1 201 329 86 0 chr13 108473491 108473561 -11271337 - L3b LINE CR1 -68 1515 1440 195 42 0 0 chr13 108473625 108473649 -11271249 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1973 121 4 0 chr13 108473651 108473931 -11270967 - AluSx SINE Alu -31 281 1 2165 122 76 15 chr13 108474438 108474781 -11270117 - THE1B LTR MaLR 0 364 1 389 314 63 23 chr13 108474979 108475154 -11269744 + MIR SINE MIR 2 183 -79 297 337 121 5 chr13 108478314 108478504 -11266394 - MIR SINE MIR -3 259 48 334 269 0 83 chr13 108478546 108478619 -11266279 + MER5A DNA MER1_type 7 70 -119 317 299 8 34 chr13 108478619 108478736 -11266162 - MER81 DNA DNA 0 114 1 334 269 0 83 chr13 108478736 108478770 -11266128 + MER5A DNA MER1_type 70 105 -84 312 379 41 0 chr13 108479437 108479582 -11265316 - MIR3 SINE MIR -9 199 49 2006 159 37 3 chr13 108479873 108480226 -11264672 - MLT1A1 LTR MaLR 0 365 1 242 293 0 0 chr13 108480231 108480289 -11264609 + MIR SINE MIR 86 143 -119 251 194 0 16 chr13 108480574 108480636 -11264262 - L1MB3 LINE L1 -36 6147 6087 1303 166 8 12 chr13 108480640 108480881 -11264017 - L1MA4 LINE L1 -279 6021 5782 870 196 35 20 chr13 108481005 108481204 -11263694 + L1 LINE L1 4696 4897 -1249 8460 177 52 19 chr13 108481223 108482550 -11262348 - L1MA4 LINE L1 -510 5793 4351 2701 93 3 0 chr13 108482550 108482904 -11261994 - THE1A LTR MaLR 0 355 1 8460 177 52 19 chr13 108482904 108483872 -11261026 - L1MA4 LINE L1 -1952 4351 3417 641 273 129 32 chr13 108483989 108484921 -11259977 - L1MEd LINE L1 -3684 2880 1890 2681 211 4 4 chr13 108484931 108485444 -11259454 + MLT2B1 LTR ERVL 3 515 -5 444 276 50 32 chr13 108485571 108485856 -11259042 - L1MEd LINE L1 -4862 1692 1411 229 232 74 32 chr13 108485972 108486067 -11258831 - L1MEd LINE L1 -4954 1091 993 329 203 0 0 chr13 108487077 108487141 -11257757 - MER91 DNA MER1_type 0 140 77 2094 146 0 0 chr13 108487262 108487570 -11257328 + AluSc SINE Alu 1 308 -1 221 338 75 23 chr13 108488492 108488625 -11256273 + L2 LINE L2 3133 3272 0 589 197 148 21 chr13 108488973 108489115 -11255783 - MER5A DNA MER1_type -21 168 9 240 247 103 31 chr13 108489178 108489275 -11255623 + Charlie7 DNA MER1_type 6 109 -2503 * 245 289 53 13 chr13 108489244 108489396 -11255502 + Charlie7 DNA MER1_type 2428 2585 -27 382 267 138 9 chr13 108489475 108489591 -11255307 - MIR3 SINE MIR -63 145 15 261 283 22 0 chr13 108490898 108490990 -11253908 + (TA)n Simple_repeat Simple_repeat 1 94 0 800 244 6 0 chr13 108491002 108491182 -11253716 + L1MB1 LINE L1 5919 6099 -90 342 235 0 0 chr13 108491182 108491284 -11253614 + (CATA)n Simple_repeat Simple_repeat 3 104 0 1480 218 12 3 chr13 108491336 108491662 -11253236 - L1MA9 LINE L1 -147 6165 5837 229 395 27 27 chr13 108493471 108493656 -11251242 + L2 LINE L2 3079 3263 -9 267 349 89 0 chr13 108493864 108494010 -11250888 + MIR3 SINE MIR 46 204 -4 26 30 0 0 chr13 108494639 108494672 -11250226 + AT_rich Low_complexity Low_complexity 1 33 0 429 243 35 97 chr13 108494912 108495138 -11249760 - MLT1A1 LTR MaLR -152 213 2 401 262 52 29 chr13 108495139 108495311 -11249587 - L1MC/D LINE L1 -2313 5495 5320 1057 314 72 57 chr13 108495454 108496559 -11248339 - L1MC/D LINE L1 -979 5167 4046 804 300 82 22 chr13 108496701 108497101 -11247797 - LTR16B LTR ERVL 0 464 41 225 286 0 66 chr13 108497545 108497636 -11247262 + MIR SINE MIR 20 104 -158 516 234 128 25 chr13 108497637 108497949 -11246949 + MLT1J2 LTR MaLR 42 393 -53 516 234 128 25 chr13 108499049 108499361 -11245537 + MLT1J2 LTR MaLR 42 393 -53 229 358 59 29 chr13 108500141 108500345 -11244553 - MIR SINE MIR -50 212 3 384 348 67 0 chr13 108500762 108500926 -11243972 + MIR SINE MIR 32 206 -56 2415 77 0 0 chr13 108500942 108501242 -11243656 + AluY SINE Alu 1 300 -11 259 191 48 0 chr13 108501733 108501796 -11243102 + (CA)n Simple_repeat Simple_repeat 1 66 0 4428 46 2 0 chr13 108501948 108502488 -11242410 - L1PA5 LINE L1 0 6154 5614 301 106 0 0 chr13 108502819 108502866 -11242032 + MADE1 DNA Mariner 1 47 -33 24 32 0 0 chr13 108504065 108504096 -11240802 + AT_rich Low_complexity Low_complexity 1 31 0 997 81 60 0 chr13 108504205 108504354 -11240544 + L1PA8 LINE L1 6013 6170 -2 4283 179 30 7 chr13 108504691 108505538 -11239360 - L1MB3 LINE L1 -1 6182 5317 730 93 0 0 chr13 108506444 108506541 -11238357 - L1P4 LINE L1 -400 5761 5665 * 6988 157 12 2 chr13 108506538 108508111 -11236787 + L1P4 LINE L1 4067 5649 -512 636 230 61 26 chr13 108508110 108508340 -11236558 - L1MB3 LINE L1 -814 5332 5095 * 225 0 0 0 chr13 108508595 108508620 -11236278 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 236 406 12 29 chr13 108509472 108509716 -11235182 + L2 LINE L2 2842 3081 -191 2549 113 3 3 chr13 108510514 108510878 -11234020 + THE1B LTR MaLR 1 364 0 2265 97 0 0 chr13 108511823 108512112 -11232786 - AluSg SINE Alu -17 293 5 1247 188 61 41 chr13 108514499 108514792 -11230106 - AluJo SINE Alu -13 299 1 1257 272 141 47 chr13 108515050 108516011 -11228887 + HAL1b LINE L1 291 1341 -7 595 302 94 74 chr13 108516083 108516838 -11228060 + L1ME4a LINE L1 5352 6121 0 1867 149 20 3 chr13 108516989 108517290 -11227608 - AluSx SINE Alu -2 310 5 203 306 82 0 chr13 108517668 108517766 -11227132 + MIR SINE MIR 156 261 -1 23 54 0 0 chr13 108518355 108518392 -11226506 + AT_rich Low_complexity Low_complexity 1 37 0 2252 101 7 0 chr13 108518494 108518801 -11226097 - AluSx SINE Alu -3 309 1 24 0 0 0 chr13 108519014 108519038 -11225860 + AT_rich Low_complexity Low_complexity 1 24 0 34 0 0 0 chr13 108519284 108519318 -11225580 + AT_rich Low_complexity Low_complexity 1 34 0 269 203 0 29 chr13 108519425 108519494 -11225404 + L1MEc LINE L1 1878 1944 -4452 344 183 195 0 chr13 108519495 108519577 -11225321 + L1MEc LINE L1 1993 2090 -4306 2432 4 0 0 chr13 108519583 108519850 -11225048 + AluYa5 SINE Alu 45 311 0 477 270 93 0 chr13 108519855 108520103 -11224795 + L1MEc LINE L1 2965 3235 -2980 24 67 0 0 chr13 108520276 108520321 -11224577 + AT_rich Low_complexity Low_complexity 1 45 0 213 326 0 42 chr13 108520409 108520504 -11224394 - L2 LINE L2 -1 3312 3222 258 160 0 0 chr13 108520740 108520790 -11224108 + (TG)n Simple_repeat Simple_repeat 2 51 0 186 43 0 0 chr13 108525104 108525127 -11219771 + (CA)n Simple_repeat Simple_repeat 2 24 0 195 42 0 0 chr13 108525899 108525923 -11218975 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1543 231 0 3 chr13 108525926 108526208 -11218690 - AluJb SINE Alu -31 281 1 1900 245 73 32 chr13 108527029 108527845 -11217053 + L1 LINE L1 2469 3318 -2828 1404 221 16 0 chr13 108527924 108528236 -11216662 + L1 LINE L1 4518 4834 -1312 2073 117 3 0 chr13 108528253 108528578 -11216320 + AluY SINE Alu 1 326 0 201 39 0 0 chr13 108528745 108528771 -11216127 + (CA)n Simple_repeat Simple_repeat 1 26 0 261 200 0 0 chr13 108529683 108529728 -11215170 + MLT1L LTR MaLR 346 390 -225 28 61 0 0 chr13 108530129 108530178 -11214720 + AT_rich Low_complexity Low_complexity 1 49 0 4358 175 22 27 chr13 108531613 108532339 -11212559 - L1MC1 LINE L1 -6 6327 5605 1810 67 9 0 chr13 108532339 108532592 -11212306 - AluY SINE Alu 0 311 57 4358 175 22 27 chr13 108532592 108532779 -11212119 - L1MC1 LINE L1 -728 5605 5418 946 57 8 0 chr13 108532960 108533082 -11211816 + AluY SINE Alu 142 264 -47 2985 189 6 0 chr13 108533108 108533643 -11211255 + L1PA16 LINE L1 5599 6136 -30 244 213 49 0 chr13 108533853 108533914 -11210984 + CT-rich Low_complexity Low_complexity 2 65 0 330 26 0 0 chr13 108534073 108534112 -11210786 + (CA)n Simple_repeat Simple_repeat 1 39 0 1485 194 79 25 chr13 108536239 108536595 -11208303 + THE1C LTR MaLR 1 375 0 183 100 0 0 chr13 108536842 108536872 -11208026 + (CAT)n Simple_repeat Simple_repeat 3 32 0 572 160 34 0 chr13 108537488 108537607 -11207291 - L1MA10 LINE L1 -1 6333 6211 6459 161 19 18 chr13 108537621 108539555 -11205343 + L1MA8 LINE L1 4089 6024 -267 5054 166 22 20 chr13 108539548 108540806 -11204092 - L1MA10 LINE L1 -116 6218 4959 * 249 308 17 26 chr13 108541907 108542024 -11202874 + MIR SINE MIR 60 175 -87 2597 0 0 7 chr13 108542364 108542675 -11202223 + AluYa5 SINE Alu 1 309 0 1087 172 26 10 chr13 108543026 108543218 -11201680 + AluJo SINE Alu 94 288 -24 2060 130 7 3 chr13 108543840 108544147 -11200751 - AluSx SINE Alu -3 309 2 1631 218 69 40 chr13 108544587 108544997 -11199901 - MLT1C LTR MaLR 0 467 41 2427 66 0 7 chr13 108544997 108545302 -11199596 - AluY SINE Alu -8 303 1 1631 218 69 40 chr13 108545302 108545340 -11199558 - MLT1C LTR MaLR -426 41 6 1717 322 76 17 chr13 108545344 108546093 -11198805 - L2 LINE L2 -497 2817 2025 595 248 244 8 chr13 108546232 108546474 -11198424 + MLT1I LTR MaLR 93 391 -18 418 326 98 21 chr13 108546562 108546755 -11198143 + MIR SINE MIR 20 227 -35 272 232 53 32 chr13 108547208 108547303 -11197595 - MIR SINE MIR -65 197 101 477 218 30 0 chr13 108547504 108547605 -11197293 - MER58A DNA MER1_type -1 106 3 594 264 24 53 chr13 108547772 108548018 -11196880 - MIR SINE MIR -18 244 6 243 318 45 11 chr13 108548124 108548212 -11196686 + L2 LINE L2 3221 3311 -2 223 307 95 74 chr13 108548222 108548453 -11196445 + L2 LINE L2 3034 3269 -3 356 287 87 33 chr13 108548593 108548743 -11196155 + L2 LINE L2 3115 3272 0 27577 88 8 5 chr13 108549057 108549489 -11195409 - L1P LINE L1 -2161 3985 3556 11221 34 3 0 chr13 108549489 108551607 -11193291 - L1PA4 LINE L1 0 6155 4035 27577 88 8 5 chr13 108551607 108555098 -11189800 - L1P LINE L1 -2590 3556 2 276 255 53 28 chr13 108555147 108555469 -11189429 - L1M4 LINE L1 -2688 3458 3129 287 286 0 18 chr13 108555711 108555823 -11189075 + GA-rich Low_complexity Low_complexity 3 112 0 236 361 49 28 chr13 108555850 108555994 -11188904 + L2 LINE L2 3123 3269 -3 219 270 0 40 chr13 108558607 108558681 -11186217 + GA-rich Low_complexity Low_complexity 1 71 0 920 186 6 0 chr13 108558801 108558968 -11185930 + FRAM SINE Alu 8 175 -1 183 321 0 0 chr13 108559533 108559586 -11185312 - MER5A DNA MER1_type -66 123 71 1164 201 0 5 chr13 108559767 108559976 -11184922 - AluJo SINE Alu -30 282 75 2057 117 7 0 chr13 108563143 108563465 -11181433 + AluSx SINE Alu 1 324 0 241 247 62 12 chr13 108564458 108564539 -11180359 + L1MEd LINE L1 4 88 -6031 209 279 105 12 chr13 108565367 108565453 -11179445 + MIR SINE MIR 16 109 -99 2111 119 0 58 chr13 108565807 108566135 -11178763 + AluSx SINE Alu 1 309 -3 311 255 22 2 chr13 108566670 108566802 -11178096 + MER58A DNA MER1_type 7 163 0 2794 167 46 31 chr13 108567515 108568054 -11176844 + Tigger1 DNA MER2_type 1 547 -1871 9341 122 37 6 chr13 108568059 108568673 -11176225 + Tigger1 DNA MER2_type 908 1501 -917 5737 60 4 11 chr13 108568673 108569425 -11175473 + L1PA8 LINE L1 5426 6172 0 9341 122 37 6 chr13 108569425 108570274 -11174624 + Tigger1 DNA MER2_type 1501 2417 -1 24 0 0 0 chr13 108571306 108571330 -11173568 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 108571424 108571446 -11173452 + AT_rich Low_complexity Low_complexity 1 22 0 414 281 22 7 chr13 108571865 108572000 -11172898 - MIR SINE MIR -1 261 125 1519 225 31 21 chr13 108572669 108572698 -11172200 + MLT1B LTR MaLR 1 28 -362 414 0 0 0 chr13 108572698 108572744 -11172154 + (CA)n Simple_repeat Simple_repeat 1 46 0 1519 225 31 21 chr13 108572744 108573100 -11171798 + MLT1B LTR MaLR 28 390 0 992 258 93 46 chr13 108573411 108573980 -11170918 - HAL1 LINE L1 -285 2222 1627 720 201 115 72 chr13 108574064 108574466 -11170432 + LTR54B LTR ERV1 46 496 -2 475 271 127 61 chr13 108574483 108575205 -11169693 - HAL1 LINE L1 -929 1578 809 258 193 0 102 chr13 108575429 108575517 -11169381 - MLT1J LTR MaLR -61 450 372 525 290 10 57 chr13 108575593 108575786 -11169112 - MLT1J LTR MaLR -317 194 11 464 282 106 106 chr13 108575796 108576346 -11168552 - HAL1 LINE L1 -1901 606 57 201 371 116 24 chr13 108577652 108577989 -11166909 + L2 LINE L2 2472 2839 -475 240 86 0 0 chr13 108578228 108578263 -11166635 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chr13 108579244 108579270 -11165628 + AT_rich Low_complexity Low_complexity 1 26 0 478 196 38 169 chr13 108580185 108580451 -11164447 + LTR16A1 LTR ERVL 60 290 -167 903 281 28 30 chr13 108581348 108581782 -11163116 + L1MC4 LINE L1 7575 8007 -35 259 44 44 0 chr13 108583175 108583220 -11161678 + (GA)n Simple_repeat Simple_repeat 2 48 0 204 159 23 0 chr13 108583363 108583407 -11161491 + T-rich Low_complexity Low_complexity 2 46 0 195 42 0 0 chr13 108585143 108585167 -11159731 + (A)n Simple_repeat Simple_repeat 1 24 0 59 0 0 0 chr13 108585922 108585981 -11158917 + AT_rich Low_complexity Low_complexity 1 59 0 182 311 92 71 chr13 108587174 108587370 -11157528 - L2 LINE L2 -8 3305 3106 414 0 0 0 chr13 108588055 108588101 -11156797 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 31 58 0 0 chr13 108588104 108588156 -11156742 + AT_rich Low_complexity Low_complexity 1 52 0 300 27 0 0 chr13 108588499 108588536 -11156362 + (TG)n Simple_repeat Simple_repeat 2 38 0 549 287 51 48 chr13 108588737 108589089 -11155809 + L1MEd LINE L1 895 1247 -4872 335 320 162 18 chr13 108589096 108589324 -11155574 + HAL1 LINE L1 1368 1628 -879 22 0 0 0 chr13 108589433 108589455 -11155443 + AT_rich Low_complexity Low_complexity 1 22 0 313 202 83 12 chr13 108589472 108589556 -11155342 + L1MC4 LINE L1 6614 6703 -1339 349 131 0 50 chr13 108589556 108589655 -11155243 + (TA)n Simple_repeat Simple_repeat 2 95 0 3578 125 21 1 chr13 108589659 108590380 -11154518 - L1PB1 LINE L1 -359 5792 5059 1901 126 7 0 chr13 108590391 108590685 -11154213 + L1PB1 LINE L1 5808 6103 -48 5442 22 2 0 chr13 108590685 108591316 -11153582 + L1PA2 LINE L1 5520 6152 -3 303 138 17 0 chr13 108591319 108591414 -11153484 + L1PB1 LINE L1 6087 6182 0 285 98 0 0 chr13 108591413 108591454 -11153444 + (CA)n Simple_repeat Simple_repeat 2 42 0 2675 116 48 88 chr13 108591456 108591979 -11152919 + L1PA16 LINE L1 5657 6160 -6 237 65 0 0 chr13 108592089 108592120 -11152778 + (CA)n Simple_repeat Simple_repeat 1 31 0 412 249 140 71 chr13 108592138 108592588 -11152310 - L1MC4 LINE L1 -209 7833 7353 271 207 0 49 chr13 108592873 108592955 -11151943 + CT-rich Low_complexity Low_complexity 2 79 0 22 0 0 0 chr13 108592996 108593018 -11151880 + AT_rich Low_complexity Low_complexity 1 22 0 1751 130 54 0 chr13 108593036 108593297 -11151601 - AluSx SINE Alu 0 312 38 371 252 113 25 chr13 108593393 108593667 -11151231 - L1M4 LINE L1 -2995 3151 2854 248 217 58 0 chr13 108593881 108593950 -11150948 + LTR41 LTR ERVL 114 186 -587 617 255 87 47 chr13 108594059 108594381 -11150517 + LTR41 LTR ERVL 429 763 -10 360 331 66 10 chr13 108594426 108594728 -11150170 - L1M4 LINE L1 -3576 2570 2252 407 307 154 32 chr13 108595144 108595678 -11149220 - L2 LINE L2 -503 2811 2213 340 301 85 40 chr13 108597307 108597483 -11147415 + HAL1 LINE L1 1134 1317 -1190 414 274 38 9 chr13 108597558 108597664 -11147234 - MER119 DNA MER1_type -469 114 6 2102 149 39 37 chr13 108597787 108598339 -11146559 - MLT2A2 LTR ERVL 0 554 3 6341 89 15 58 chr13 108598341 108599334 -11145564 - HERVL-A2 LTR ERVL 0 5654 4705 1766 166 7 7 chr13 108599585 108599901 -11144997 - AluSx SINE Alu 0 316 1 669 290 68 0 chr13 108600097 108600304 -11144594 + MER58A DNA MER1_type 1 221 -3 551 154 123 0 chr13 108601510 108601640 -11143258 + L1MB3 LINE L1 6008 6153 -30 314 349 59 37 chr13 108601765 108602473 -11142425 + L1ME3A LINE L1 3615 4338 -1808 21 82 0 0 chr13 108602662 108602711 -11142187 + AT_rich Low_complexity Low_complexity 1 49 0 352 281 128 75 chr13 108602748 108602821 -11142077 + L1ME3A LINE L1 5624 5692 -478 1794 185 3 0 chr13 108602821 108603118 -11141780 - AluJb SINE Alu -14 298 1 352 281 128 75 chr13 108603118 108603418 -11141480 + L1ME3A LINE L1 5692 6017 -153 230 279 171 0 chr13 108603674 108603785 -11141113 - L1ME LINE L1 -418 5703 5574 29 49 0 16 chr13 108604010 108604026 -11140872 + AT_rich Low_complexity Low_complexity 1 16 -44 1792 146 0 21 chr13 108604026 108604306 -11140592 - AluSq SINE Alu -39 274 1 29 49 0 16 chr13 108604306 108604350 -11140548 + AT_rich Low_complexity Low_complexity 16 60 0 38 75 0 0 chr13 108604365 108604445 -11140453 + AT_rich Low_complexity Low_complexity 1 80 0 394 192 80 64 chr13 108605343 108605468 -11139430 + Charlie4 DNA MER1_type 1818 1944 -17 2100 216 22 28 chr13 108605607 108606115 -11138783 - MLT1D LTR MaLR 0 505 1 259 248 193 28 chr13 108606538 108606647 -11138251 - MER5A DNA MER1_type -28 161 35 192 232 21 21 chr13 108607230 108607325 -11137573 + CT-rich Low_complexity Low_complexity 5 99 0 196 349 96 0 chr13 108607926 108608009 -11136889 - L2 LINE L2 -244 3069 2979 199 291 152 61 chr13 108608112 108608277 -11136621 - L2 LINE L2 -371 2943 2764 283 222 28 14 chr13 108608915 108608987 -11135911 - MIR3 SINE MIR -6 202 130 430 275 28 21 chr13 108609232 108609374 -11135524 - MER58B DNA MER1_type -2 339 197 2371 46 30 20 chr13 108609972 108610275 -11134623 - AluY SINE Alu -5 306 1 21 0 0 0 chr13 108610341 108610362 -11134536 + AT_rich Low_complexity Low_complexity 1 21 0 911 101 7 7 chr13 108610362 108610501 -11134397 - L1MA5A LINE L1 -10 6287 6149 744 144 0 0 chr13 108610505 108610623 -11134275 + L1MA5A LINE L1 6051 6168 -129 2241 246 82 22 chr13 108610816 108611940 -11132958 - L1ME2 LINE L1 -8 6967 5779 1559 273 97 17 chr13 108611991 108612027 -11132871 - L1ME2 LINE L1 -6265 594 562 2628 27 0 0 chr13 108612027 108612325 -11132573 - AluY SINE Alu -13 298 1 1559 273 97 17 chr13 108612325 108612826 -11132072 - L1ME2 LINE L1 -6297 562 14 2969 151 6 12 chr13 108613475 108613972 -11130926 + LOR1a LTR ERV1 4 497 0 1892 156 0 19 chr13 108614360 108614675 -11130223 - AluJb SINE Alu -3 309 1 258 231 15 15 chr13 108615073 108615138 -11129760 + LTR50 LTR ERVL 17 81 -714 575 279 53 39 chr13 108615255 108615622 -11129276 + LTR50 LTR ERVL 293 509 -14 1790 218 8 66 chr13 108615650 108616178 -11128720 + MLT1D LTR MaLR 3 499 -6 263 323 55 43 chr13 108616224 108616388 -11128510 + L2 LINE L2 2228 2393 -921 22 35 0 0 chr13 108616402 108616431 -11128467 + AT_rich Low_complexity Low_complexity 1 29 0 393 73 0 0 chr13 108616431 108616486 -11128412 - L1PA4 LINE L1 0 6155 6101 1996 25 0 0 chr13 108616486 108616721 -11128177 + L1PA3 LINE L1 5742 5976 -179 230 344 102 37 chr13 108616729 108617052 -11127846 + L2 LINE L2 2424 2767 -547 442 342 113 43 chr13 108617155 108617500 -11127398 + L2 LINE L2 2904 3272 0 1260 173 0 0 chr13 108617728 108617919 -11126979 - THE1B LTR MaLR -173 191 1 * 1761 147 6 66 chr13 108617919 108618263 -11126635 - MER41B LTR ERV1 -199 436 114 1431 215 99 35 chr13 108618466 108618889 -11126009 - MLT1C LTR MaLR 0 467 18 1853 212 97 4 chr13 108618979 108619445 -11125453 - LTR22 LTR ERVK 0 509 1 22 56 0 0 chr13 108619808 108619844 -11125054 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr13 108620431 108620467 -11124431 + AT_rich Low_complexity Low_complexity 1 36 0 10836 146 31 38 chr13 108620636 108621821 -11123077 + Tigger2 DNA MER2_type 727 1892 -826 2265 102 3 7 chr13 108621821 108622124 -11122774 + AluSg1 SINE Alu 1 302 -7 10836 146 31 38 chr13 108622124 108622943 -11121955 + Tigger2 DNA MER2_type 1892 2716 -2 232 319 150 48 chr13 108623138 108623618 -11121280 + HAL1 LINE L1 1170 1698 -809 346 293 28 9 chr13 108623738 108623844 -11121054 + MER20B DNA MER1_type 1 108 -675 198 71 0 0 chr13 108623966 108623994 -11120904 + (TA)n Simple_repeat Simple_repeat 1 28 0 1624 150 87 0 chr13 108624431 108624718 -11120180 + AluSx SINE Alu 1 312 0 209 43 0 0 chr13 108625026 108625326 -11119572 + AT_rich Low_complexity Low_complexity 1 300 0 886 282 164 16 chr13 108625384 108625824 -11119074 - MLT1D LTR MaLR 0 505 1 243 0 0 0 chr13 108627106 108627133 -11117765 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 340 353 19 34 chr13 108627335 108627658 -11117240 + L1MCb LINE L1 47 364 -5681 1256 256 139 68 chr13 108627764 108627898 -11117000 + MLT1E2 LTR MaLR 6 129 -497 2054 160 8 39 chr13 108627898 108628285 -11116613 + THE1C LTR MaLR 1 375 0 1256 256 139 68 chr13 108628285 108628756 -11116142 + MLT1E2 LTR MaLR 129 626 0 787 74 0 2 chr13 108628897 108629011 -11115887 + L1PA7 LINE L1 5046 5157 -989 6886 72 1 0 chr13 108629012 108629953 -11114945 + L1PA7 LINE L1 5213 6154 0 428 266 125 67 chr13 108630930 108631387 -11113511 - L1MCc LINE L1 -5074 1348 820 2453 97 3 0 chr13 108631539 108631889 -11113009 - L1P LINE L1 -1079 5067 4717 21 0 0 0 chr13 108632046 108632067 -11112831 + AT_rich Low_complexity Low_complexity 1 21 0 2000 136 61 19 chr13 108632198 108632558 -11112340 - THE1C LTR MaLR 0 375 1 9004 130 32 64 chr13 108632558 108634189 -11110709 - THE1C-int LTR MaLR 0 1580 1 1838 153 82 20 chr13 108634189 108634542 -11110356 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr13 108637023 108637045 -11107853 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 108638515 108638543 -11106355 + AT_rich Low_complexity Low_complexity 1 28 0 205 176 20 29 chr13 108638731 108638833 -11106065 + (TA)n Simple_repeat Simple_repeat 2 102 0 45 34 0 0 chr13 108638840 108638899 -11105999 + AT_rich Low_complexity Low_complexity 1 59 0 349 157 0 102 chr13 108638926 108639123 -11105775 + (TA)n Simple_repeat Simple_repeat 1 177 0 891 188 24 6 chr13 108639148 108639313 -11105585 - AluJo SINE Alu -144 168 1 1792 188 206 53 chr13 108640569 108641381 -11103517 - L1MCa LINE L1 -4322 2423 1390 1640 249 16 34 chr13 108641396 108641902 -11102996 - L1MCa LINE L1 -4888 1157 661 2378 195 16 14 chr13 108641902 108642431 -11102467 + LTR27 LTR ERV1 3 599 -138 325 284 0 28 chr13 108642481 108642622 -11102276 + LTR27 LTR ERV1 500 636 0 325 317 50 0 chr13 108642627 108642728 -11102170 - L1MCa LINE L1 -5688 876 771 863 293 37 67 chr13 108642818 108643252 -11101646 - L1MCa LINE L1 -5472 573 153 195 347 41 31 chr13 108643344 108643442 -11101456 + L2 LINE L2 3164 3262 -10 2240 132 27 19 chr13 108645255 108645627 -11099271 + THE1C LTR MaLR 1 375 0 34 65 0 0 chr13 108645776 108645838 -11099060 + AT_rich Low_complexity Low_complexity 1 62 0 231 185 231 0 chr13 108646669 108646734 -11098164 - MLT1J1 LTR MaLR -1 445 366 2417 58 0 0 chr13 108646765 108647060 -11097838 + AluY SINE Alu 3 297 -14 349 194 0 15 chr13 108647092 108647159 -11097739 - MLT1J2 LTR MaLR -123 327 262 999 237 43 0 chr13 108647418 108647650 -11097248 - MER63B DNA MER1_type 0 436 195 300 197 99 0 chr13 108647650 108647721 -11097177 - AluJo SINE Alu -103 199 122 * 847 192 35 64 chr13 108647711 108647914 -11096984 - MER63B DNA MER1_type -237 199 3 954 246 82 8 chr13 108648246 108648612 -11096286 + Charlie5 DNA MER1_type 2232 2624 0 311 339 69 43 chr13 108649292 108649525 -11095373 - L1MC/D LINE L1 -2315 5493 5255 299 284 37 97 chr13 108650772 108650906 -11093992 + MIR SINE MIR 19 144 -118 35 88 0 0 chr13 108652209 108652300 -11092598 + AT_rich Low_complexity Low_complexity 1 91 0 234 230 59 13 chr13 108652334 108652486 -11092412 + (TA)n Simple_repeat Simple_repeat 1 159 0 1836 160 86 6 chr13 108652702 108653039 -11091859 - THE1B LTR MaLR 0 364 1 1814 188 14 11 chr13 108653596 108653956 -11090942 - MLT1A1 LTR MaLR -4 424 1 1650 231 84 24 chr13 108653956 108654405 -11090493 + MLT1D LTR MaLR 30 505 0 211 375 103 11 chr13 108654963 108655235 -11089663 - L2 LINE L2 -665 2649 2353 1356 178 9 68 chr13 108655236 108655574 -11089324 - L1MA10 LINE L1 -3 6331 6014 322 148 0 0 chr13 108655576 108655630 -11089268 - MLT2A2 LTR ERVL 0 453 400 308 275 0 22 chr13 108655670 108655761 -11089137 + L1MC4 LINE L1 6615 6703 -1339 2842 83 20 8 chr13 108655775 108656174 -11088724 - MLT2A1 LTR ERVL -40 404 1 21 71 0 0 chr13 108656793 108656835 -11088063 + AT_rich Low_complexity Low_complexity 1 42 0 191 340 124 44 chr13 108657476 108657726 -11087172 + L3 LINE CR1 898 1167 -410 300 343 73 55 chr13 108657944 108658288 -11086610 + L3 LINE CR1 1068 1417 -160 891 115 20 0 chr13 108658328 108658476 -11086422 - L1MA5A LINE L1 -3 6294 6144 252 343 43 64 chr13 108658640 108658780 -11086118 + MIR3 SINE MIR 8 144 -64 1289 123 10 0 chr13 108658919 108659123 -11085775 - L1MA2 LINE L1 0 6304 6099 312 120 0 0 chr13 108659144 108659194 -11085704 + (CA)n Simple_repeat Simple_repeat 2 51 0 194 350 75 67 chr13 108659228 108659348 -11085550 + L2 LINE L2 3150 3270 -2 259 309 0 11 chr13 108659844 108659938 -11084960 + MIR SINE MIR 160 252 -10 1968 62 0 0 chr13 108660087 108660327 -11084571 + AluY SINE Alu 59 298 -13 211 264 56 28 chr13 108661931 108662003 -11082895 + MIR SINE MIR 135 208 -54 1766 211 61 35 chr13 108662190 108662501 -11082397 + MLT1D LTR MaLR 1 331 -174 2040 96 20 17 chr13 108662501 108662794 -11082104 + AluSp SINE Alu 1 294 -19 1766 211 61 35 chr13 108662794 108662974 -11081924 + MLT1D LTR MaLR 331 505 0 1197 202 86 39 chr13 108663167 108663529 -11081369 + MER58D DNA MER1_type 2 380 -6 35 24 0 0 chr13 108664486 108664528 -11080370 + AT_rich Low_complexity Low_complexity 1 42 0 1525 72 14 9 chr13 108665535 108665756 -11079142 + L1PA8 LINE L1 5949 6170 -2 34 0 0 0 chr13 108665931 108665965 -11078933 + AT_rich Low_complexity Low_complexity 1 34 0 22 70 0 0 chr13 108666811 108666854 -11078044 + AT_rich Low_complexity Low_complexity 1 43 0 636 227 0 16 chr13 108667798 108667926 -11076972 - FLAM_A SINE Alu -6 127 2 1665 171 3 30 chr13 108668351 108668650 -11076248 - AluJo SINE Alu -21 291 1 5287 123 101 67 chr13 108668992 108670481 -11074417 + pTR5 LTR ERV1 736 2438 0 1695 293 87 28 chr13 108670611 108672328 -11072570 + L1MCc LINE L1 818 2878 -4244 * 2947 217 53 4 chr13 108672325 108673091 -11071807 + L1MB3 LINE L1 5347 6178 -5 1638 120 22 7 chr13 108673097 108673373 -11071525 + L1MA4A LINE L1 6018 6297 -6 1262 250 139 21 chr13 108673410 108674060 -11070838 + L1MCc LINE L1 2909 3583 -3358 267 98 0 0 chr13 108674055 108674096 -11070802 - L1MA4A LINE L1 -25 6278 6238 * 1507 244 37 77 chr13 108674273 108674896 -11070002 + L1MCc LINE L1 4187 4784 -2157 184 318 140 9 chr13 108675042 108675149 -11069749 + L2 LINE L2 3128 3248 -24 252 220 0 0 chr13 108675776 108675826 -11069072 + MIR SINE MIR 8 57 -205 2626 34 9 6 chr13 108675834 108676156 -11068742 - L1PA5 LINE L1 0 6154 5832 1861 248 156 41 chr13 108676158 108677082 -11067816 + L1MC4a LINE L1 6779 7808 0 522 344 88 16 chr13 108677401 108677776 -11067122 + LTR16C LTR ERVL 90 491 0 369 0 0 0 chr13 108677869 108677910 -11066988 + (TG)n Simple_repeat Simple_repeat 2 42 0 1410 246 32 55 chr13 108677916 108678387 -11066511 - MLT1C LTR MaLR -7 460 1 1087 297 34 34 chr13 108678692 108679133 -11065765 + LTR40c LTR ERVL 20 460 -5 277 352 0 0 chr13 108679664 108679752 -11065146 + L2 LINE L2 3185 3272 0 619 304 70 16 chr13 108680628 108680871 -11064027 - MIR SINE MIR -2 260 5 250 350 31 0 chr13 108681016 108681113 -11063785 - L3 LINE CR1 -460 1117 1018 5098 158 23 18 chr13 108681178 108682136 -11062762 + L1MA6 LINE L1 5334 6296 -4 213 217 11 76 chr13 108682154 108682246 -11062652 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 2009 133 0 3 chr13 108683243 108683544 -11061354 + AluSx SINE Alu 1 300 -12 225 196 0 0 chr13 108683556 108683602 -11061296 + A-rich Low_complexity Low_complexity 1 46 0 1924 132 10 23 chr13 108683607 108683911 -11060987 + AluSc SINE Alu 5 304 -5 24 0 0 0 chr13 108684408 108684432 -11060466 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr13 108684642 108684678 -11060220 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr13 108684747 108684769 -11060129 + AT_rich Low_complexity Low_complexity 1 22 0 607 264 11 80 chr13 108685964 108686240 -11058658 - MIR SINE MIR 0 262 6 188 318 51 57 chr13 108686573 108686686 -11058212 + L2 LINE L2 2684 2797 -517 2330 89 0 3 chr13 108686686 108686990 -11057908 + AluSc SINE Alu 1 303 -6 188 318 51 57 chr13 108686990 108687052 -11057846 + L2 LINE L2 2797 2858 -456 188 329 0 14 chr13 108687366 108687436 -11057462 + MER5A DNA MER1_type 38 106 -83 22 0 0 0 chr13 108689486 108689508 -11055390 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr13 108689882 108689917 -11054981 + AT_rich Low_complexity Low_complexity 1 35 0 460 381 91 28 chr13 108690056 108690739 -11054159 + L3 LINE CR1 769 1494 -83 180 0 0 0 chr13 108690754 108690774 -11054124 + (TTG)n Simple_repeat Simple_repeat 2 21 0 268 302 78 0 chr13 108690906 108691035 -11053863 + L2 LINE L2 2439 2577 -737 488 299 56 81 chr13 108691170 108691491 -11053407 + L2 LINE L2 2997 3309 -4 394 236 9 18 chr13 108691579 108691689 -11053209 - L1ME2 LINE L1 -8 6156 6048 450 200 107 47 chr13 108691711 108691861 -11053037 - L1ME2 LINE L1 -196 5968 5810 186 263 40 53 chr13 108696014 108696090 -11048808 + MIR SINE MIR 188 262 0 24 0 0 0 chr13 108696360 108696384 -11048514 + AT_rich Low_complexity Low_complexity 1 24 0 209 167 0 17 chr13 108696454 108696514 -11048384 + (TA)n Simple_repeat Simple_repeat 2 60 0 3207 260 78 12 chr13 108696548 108698416 -11046482 - L1ME1 LINE L1 -183 6377 4427 1333 275 90 45 chr13 108698517 108699989 -11044909 - L1ME1 LINE L1 -3142 3398 1889 478 236 59 66 chr13 108700019 108700290 -11044608 - L1ME1 LINE L1 -4934 1606 1338 242 293 0 75 chr13 108700294 108700427 -11044471 + MLT1K LTR MaLR 102 224 -364 592 353 33 8 chr13 108700540 108700784 -11044114 + L2 LINE L2 2690 2939 -375 1241 175 5 0 chr13 108700791 108701059 -11043839 + AluJb SINE Alu 67 335 0 285 29 0 0 chr13 108701148 108701182 -11043716 + (CA)n Simple_repeat Simple_repeat 2 35 0 431 258 33 25 chr13 108701200 108701320 -11043578 + L2 LINE L2 3192 3312 -1 390 224 34 128 chr13 108701330 108701509 -11043389 + MLT1K LTR MaLR 400 561 -27 402 216 54 34 chr13 108704031 108704048 -11040850 - L1MA10 LINE L1 -3 6331 6315 528 232 63 7 chr13 108704048 108704242 -11040656 - L1ME2 LINE L1 -7 6155 5947 298 189 14 54 chr13 108704537 108704611 -11040287 + L1MC3 LINE L1 7060 7130 -655 1065 229 28 38 chr13 108704615 108704663 -11040235 + L1MC3 LINE L1 7235 7282 -503 2079 116 0 3 chr13 108704663 108704948 -11039950 + AluSx SINE Alu 15 298 -14 1065 229 28 38 chr13 108704948 108705187 -11039711 + L1MC3 LINE L1 7282 7519 -266 1812 244 27 31 chr13 108705187 108705653 -11039245 + MLT2B1 LTR ERVL 1 466 -54 2463 108 55 26 chr13 108705653 108706069 -11038829 + MSTA LTR MaLR 1 428 0 1812 244 27 31 chr13 108706069 108706123 -11038775 + MLT2B1 LTR ERVL 466 519 -1 1193 219 12 0 chr13 108706124 108706380 -11038518 + L1MC3 LINE L1 7515 7773 -12 1819 214 73 55 chr13 108707802 108708415 -11036483 - MLT1E3 LTR MaLR 0 624 1 808 232 19 62 chr13 108708643 108708854 -11036044 - Charlie8 DNA MER1_type -2215 202 1 497 261 79 6 chr13 108709480 108709645 -11035253 + MIR SINE MIR 86 262 0 251 318 45 40 chr13 108710426 108710602 -11034296 + L2 LINE L2 2576 2752 -562 419 370 19 28 chr13 108710851 108711067 -11033831 - MIR SINE MIR 0 262 49 369 290 86 2 chr13 108711356 108711492 -11033406 - MIR SINE MIR -63 145 23 1558 210 55 31 chr13 108711722 108712174 -11032724 - L1MDa LINE L1 -4669 1871 1409 9303 185 20 25 chr13 108712187 108715081 -11029817 - L1MA4A LINE L1 -25 6980 4049 2542 113 13 5 chr13 108715081 108715461 -11029437 + L1PA11 LINE L1 5792 6174 0 9303 185 20 25 chr13 108715461 108715728 -11029170 - L1MA4A LINE L1 -2956 4049 3782 2255 286 33 81 chr13 108715732 108717223 -11027675 - L1MA4A LINE L1 -5321 1528 2 1763 294 150 7 chr13 108717230 108718279 -11026619 - L1MDa LINE L1 -5098 1442 60 2442 7 7 0 chr13 108718421 108718701 -11026197 - L1PA3 LINE L1 0 6155 5874 1603 32 0 3 chr13 108718701 108718907 -11025991 + L1PA3 LINE L1 5707 5890 -265 641 321 75 63 chr13 108718945 108719289 -11025609 - L2 LINE L2 -1138 2176 1819 1879 192 15 15 chr13 108719289 108719680 -11025218 + L1MC1 LINE L1 5938 6328 -5 641 321 75 63 chr13 108719680 108719986 -11024912 - L2 LINE L2 -1495 1819 1518 23 0 0 0 chr13 108721385 108721408 -11023490 + AT_rich Low_complexity Low_complexity 1 23 0 1522 208 16 19 chr13 108723258 108723637 -11021261 + L1MB1 LINE L1 5784 6161 -7 385 113 0 0 chr13 108724149 108724202 -11020696 + Alu SINE Alu 1 53 -249 2151 97 3 0 chr13 108724306 108724595 -11020303 - AluSg SINE Alu -20 290 1 1504 288 84 4 chr13 108727602 108728099 -11016799 - MLT1E LTR MaLR 0 593 57 2295 122 11 6 chr13 108728247 108728600 -11016298 - THE1A LTR MaLR 0 355 1 504 186 152 114 chr13 108729194 108729404 -11015494 - MER20 DNA MER1_type -1 218 1 22 0 0 0 chr13 108729931 108729953 -11014945 + AT_rich Low_complexity Low_complexity 1 22 0 426 289 181 28 chr13 108730778 108731103 -11013795 - MLT1I LTR MaLR -25 384 10 309 82 0 0 chr13 108731838 108731887 -11013011 + (TC)n Simple_repeat Simple_repeat 1 49 0 417 39 0 0 chr13 108731888 108731939 -11012959 + (TG)n Simple_repeat Simple_repeat 2 52 0 631 271 30 25 chr13 108732157 108732360 -11012538 - LTR67 LTR ERVL 0 557 354 253 274 69 10 chr13 108732552 108732654 -11012244 - LTR67 LTR ERVL -449 108 1 226 359 82 18 chr13 108732899 108733069 -11011829 - MIR SINE MIR -70 192 12 1298 218 32 0 chr13 108733568 108733853 -11011045 + AluJo SINE Alu 1 294 -18 2011 130 3 0 chr13 108734025 108734317 -11010581 + AluSg SINE Alu 6 298 -12 1949 25 0 4 chr13 108735555 108735792 -11009106 - L1PA4 LINE L1 -3 6152 5917 274 294 10 0 chr13 108736066 108736168 -11008730 + L2 LINE L2 2149 2251 -1063 1472 187 18 65 chr13 108736202 108736587 -11008311 - LTR10A LTR ERV1 -61 548 182 241 274 48 0 chr13 108736631 108736693 -11008205 - LTR10A LTR ERV1 -544 65 1 545 371 155 0 chr13 108736752 108737140 -11007758 + L2 LINE L2 2339 2786 -528 334 258 144 48 chr13 108737186 108737353 -11007545 + MIR SINE MIR 42 224 -38 429 303 74 45 chr13 108737564 108737808 -11007090 + L2 LINE L2 3062 3312 -1 24 0 0 0 chr13 108737812 108737836 -11007062 + AT_rich Low_complexity Low_complexity 1 24 0 380 288 92 51 chr13 108738866 108739279 -11005619 - Charlie7 DNA MER1_type -161 2451 2022 254 290 0 0 chr13 108739280 108739349 -11005549 + CT-rich Low_complexity Low_complexity 2 70 0 1127 278 107 102 chr13 108739403 108739440 -11005458 + L2 LINE L2 1788 1823 -1490 1697 191 0 3 chr13 108739440 108739749 -11005149 - AluSx SINE Alu -4 308 1 1127 278 107 102 chr13 108739749 108740113 -11004785 + L2 LINE L2 1823 2183 -1130 457 233 101 0 chr13 108740113 108740242 -11004656 - MER63A DNA MER1_type 0 210 69 1127 278 107 102 chr13 108740242 108741157 -11003741 + L2 LINE L2 2183 3235 -78 231 319 0 0 chr13 108741157 108741229 -11003669 + CT-rich Low_complexity Low_complexity 3 74 0 263 206 15 15 chr13 108741757 108741825 -11003073 - L1MDa LINE L1 -6204 336 269 1713 193 7 3 chr13 108742266 108742567 -11002331 + AluJb SINE Alu 1 302 -10 241 252 76 42 chr13 108742765 108742884 -11002014 - Charlie7 DNA MER1_type -2458 154 32 369 281 67 49 chr13 108742899 108743063 -11001835 + MIR SINE MIR 2 168 -94 219 261 29 0 chr13 108743125 108743194 -11001704 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 225 327 0 37 chr13 108743619 108743726 -11001172 + LTR33A LTR ERVL 419 521 -2 218 196 0 0 chr13 108745378 108745424 -10999474 + A-rich Low_complexity Low_complexity 1 46 0 343 326 56 0 chr13 108745666 108745844 -10999054 + HAL1 LINE L1 1536 1723 -784 23 54 0 0 chr13 108746013 108746050 -10998848 + AT_rich Low_complexity Low_complexity 1 37 0 310 60 20 20 chr13 108746959 108747009 -10997889 + L1PA4 LINE L1 6095 6144 -11 207 0 0 0 chr13 108747014 108747037 -10997861 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 201 121 0 0 chr13 108748290 108748323 -10996575 + (CA)n Simple_repeat Simple_repeat 2 34 0 276 165 41 8 chr13 108748380 108748501 -10996397 + (TA)n Simple_repeat Simple_repeat 1 125 0 2415 80 6 0 chr13 108749618 108749929 -10994969 + AluSp SINE Alu 1 313 0 26 0 0 0 chr13 108750043 108750069 -10994829 + AT_rich Low_complexity Low_complexity 1 26 0 439 352 102 9 chr13 108750672 108751107 -10993791 - L2 LINE L2 -78 3235 2764 27 62 0 0 chr13 108752192 108752240 -10992658 + AT_rich Low_complexity Low_complexity 1 48 0 647 285 51 37 chr13 108752381 108752732 -10992166 - MLT1I LTR MaLR -53 356 1 899 107 13 44 chr13 108753007 108753166 -10991732 - L1MA3 LINE L1 0 6305 6152 293 345 40 14 chr13 108753321 108753469 -10991429 - L2 LINE L2 0 3313 3162 270 256 56 11 chr13 108753481 108753571 -10991327 + MER94 DNA DNA 3 96 -38 383 282 86 59 chr13 108753586 108753806 -10991092 - L2 LINE L2 -161 3152 2927 1134 148 43 38 chr13 108753866 108754076 -10990822 + THE1B LTR MaLR 1 211 -153 602 254 0 0 chr13 108754115 108754237 -10990661 - FLAM_A SINE Alu -11 122 1 1406 193 22 71 chr13 108754397 108754765 -10990133 + MLT1B LTR MaLR 3 352 -38 315 71 0 0 chr13 108754766 108754808 -10990090 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr13 108755798 108755823 -10989075 + AT_rich Low_complexity Low_complexity 1 25 0 316 273 0 0 chr13 108755866 108755943 -10988955 - L2 LINE L2 -1363 1951 1875 1845 158 3 3 chr13 108755954 108756283 -10988615 - L1MA5 LINE L1 -7 6293 5965 199 306 0 0 chr13 108756431 108756480 -10988418 + MIR SINE MIR 50 98 -164 2155 78 41 3 chr13 108756742 108757037 -10987861 + AluY SINE Alu 1 306 -5 185 197 16 0 chr13 108757047 108757108 -10987790 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 218 0 94 0 chr13 108759683 108759715 -10985183 + A-rich Low_complexity Low_complexity 3 37 0 567 285 35 6 chr13 108761309 108761481 -10983417 - MIR SINE MIR 0 262 86 21 0 0 0 chr13 108761548 108761569 -10983329 + AT_rich Low_complexity Low_complexity 1 21 0 1271 267 95 56 chr13 108761966 108762712 -10982186 + L1ME1 LINE L1 5276 6050 -116 1523 147 3 102 chr13 108764153 108764321 -10980577 - AluJb SINE Alu -18 284 160 2111 123 7 0 chr13 108764321 108764613 -10980285 + AluSx SINE Alu 1 294 -18 1523 147 3 102 chr13 108764613 108764758 -10980140 - AluJb SINE Alu -142 160 2 528 294 138 9 chr13 108764888 108765119 -10979779 - MIR SINE MIR 0 262 2 2108 94 10 26 chr13 108766757 108767064 -10977834 + AluSc SINE Alu 1 302 -7 1548 191 40 62 chr13 108767156 108767527 -10977371 + MLT1A1 LTR MaLR 3 365 0 2208 105 17 0 chr13 108768224 108768520 -10976378 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr13 108769021 108769044 -10975854 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 108769918 108769942 -10974956 + AT_rich Low_complexity Low_complexity 1 24 0 4476 59 7 0 chr13 108769974 108770535 -10974363 - L1PA7 LINE L1 -2 6152 5588 1017 35 28 14 chr13 108771153 108771298 -10973600 + (TTTC)n Simple_repeat Simple_repeat 3 149 0 21 0 0 0 chr13 108772985 108773006 -10971892 + AT_rich Low_complexity Low_complexity 1 21 0 271 113 0 38 chr13 108773262 108773315 -10971583 - MLT2D LTR ERVL -6 514 464 1599 178 44 46 chr13 108773369 108773735 -10971163 - MLT2D LTR ERVL -47 367 3 304 329 47 96 chr13 108773737 108773806 -10971092 - MLT1J LTR MaLR -103 408 337 741 189 8 0 chr13 108773806 108773938 -10970960 - FLAM_C SINE Alu 0 133 1 304 329 47 96 chr13 108773938 108774297 -10970601 - MLT1J LTR MaLR -174 337 1 587 302 25 28 chr13 108774304 108774541 -10970357 - MIR SINE MIR -13 249 17 3753 27 2 0 chr13 108774744 108775183 -10969715 + L1PA4 LINE L1 5703 6142 -13 2102 130 3 0 chr13 108775233 108775541 -10969357 - AluSg SINE Alu -1 309 1 1325 117 29 25 chr13 108775783 108776022 -10968876 - L1MA9 LINE L1 -2 6310 6071 263 310 103 0 chr13 108778007 108778123 -10966775 + MIR SINE MIR 61 188 -74 1719 142 49 82 chr13 108778665 108779053 -10965845 + THE1C LTR MaLR 1 375 0 555 304 101 18 chr13 108779141 108779368 -10965530 + MIR SINE MIR 15 260 -2 21 36 0 0 chr13 108779369 108779397 -10965501 + AT_rich Low_complexity Low_complexity 1 28 0 1832 155 3 22 chr13 108779501 108779817 -10965081 + AluSq SINE Alu 1 310 -3 853 90 0 0 chr13 108780077 108780199 -10964699 + (GA)n Simple_repeat Simple_repeat 1 122 0 1830 129 194 22 chr13 108780308 108780673 -10964225 - MSTA LTR MaLR 0 428 1 292 109 0 78 chr13 108780673 108780737 -10964161 - MSTA-int LTR MaLR 0 1649 1522 496 169 0 1 chr13 108780737 108780828 -10964070 - MSTA LTR MaLR -342 90 1 723 254 11 132 chr13 108781376 108781656 -10963242 + MIR SINE MIR 2 247 -15 306 418 0 6 chr13 108781961 108782119 -10962779 - MIR SINE MIR -94 168 12 385 336 48 35 chr13 108782909 108783138 -10961760 + L2 LINE L2 2216 2447 -867 305 333 22 67 chr13 108783352 108783532 -10961366 + L2 LINE L2 2524 2695 -619 1382 153 188 16 chr13 108785095 108785415 -10959483 - THE1C LTR MaLR 0 375 1 1026 235 47 55 chr13 108786091 108786453 -10958445 + MLT1A2 LTR MaLR 1 359 -15 198 0 0 0 chr13 108787619 108787641 -10957257 + (T)n Simple_repeat Simple_repeat 1 22 0 2070 111 3 49 chr13 108787852 108788176 -10956722 - AluSx SINE Alu -3 309 1 515 263 69 83 chr13 108788451 108788722 -10956176 - L1M4 LINE L1 -2922 3224 2951 1621 153 24 24 chr13 108788722 108789017 -10955881 + L1PB4 LINE L1 5844 6138 -18 180 0 0 0 chr13 108789020 108789040 -10955858 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 515 263 69 83 chr13 108789040 108789183 -10955715 - L1M4 LINE L1 -3197 2949 2812 494 292 106 23 chr13 108789418 108789682 -10955216 - L1MC/D LINE L1 -1996 5812 5527 1210 130 0 0 chr13 108789869 108790038 -10954860 + AluSg/x SINE Alu 133 301 -11 307 319 82 37 chr13 108790060 108790330 -10954568 - L1MC/D LINE L1 -1005 5141 4860 1828 176 95 18 chr13 108790866 108791257 -10953641 + MSTA LTR MaLR 8 428 0 21 0 0 0 chr13 108791322 108791343 -10953555 + AT_rich Low_complexity Low_complexity 1 21 0 1790 100 65 4 chr13 108791394 108791673 -10953225 + AluY SINE Alu 1 296 -15 1159 241 70 83 chr13 108791855 108792382 -10952516 - MLT2B1 LTR ERVL 0 520 1 2188 59 3 24 chr13 108792650 108792975 -10951923 - AluY SINE Alu 0 319 1 1609 233 77 18 chr13 108794412 108794868 -10950030 - MER110 LTR ERV1 -6 485 3 192 398 54 11 chr13 108795647 108795740 -10949158 - MIR3 SINE MIR -110 98 2 787 234 105 8 chr13 108796066 108796314 -10948584 - MER5C DNA MER1_type -52 272 1 1737 171 0 0 chr13 108796487 108796796 -10948102 - AluJb SINE Alu 0 311 3 198 319 101 36 chr13 108796823 108796961 -10947937 + L2 LINE L2 3167 3313 0 1323 258 99 12 chr13 108797106 108797529 -10947369 + MLT1C LTR MaLR 1 460 -7 548 287 99 40 chr13 108799073 108799275 -10945623 - MIR SINE MIR -16 246 33 1682 148 0 25 chr13 108800136 108800420 -10944478 - AluSx SINE Alu -2 310 34 25 31 0 0 chr13 108800488 108800520 -10944378 + AT_rich Low_complexity Low_complexity 1 32 0 2295 82 0 16 chr13 108800606 108800912 -10943986 - AluY SINE Alu -10 301 1 25 51 0 0 chr13 108801161 108801200 -10943698 + AT_rich Low_complexity Low_complexity 1 39 0 1275 81 0 0 chr13 108801200 108801373 -10943525 - L1MA1 LINE L1 -1 6301 6129 1673 99 7 50 chr13 108801373 108801655 -10943243 + L1MA1 LINE L1 5772 6041 -261 204 374 14 29 chr13 108802530 108802680 -10942218 + MIR SINE MIR 4 150 -58 255 289 24 12 chr13 108802731 108802814 -10942084 + GA-rich Low_complexity Low_complexity 4 87 0 241 397 17 0 chr13 108803590 108803706 -10941192 - L2 LINE L2 -36 3277 3160 457 226 88 25 chr13 108803763 108803922 -10940976 - MER97a DNA MER1_type? -725 169 1 233 359 106 6 chr13 108804401 108804571 -10940327 - L2 LINE L2 -308 3005 2819 242 135 40 40 chr13 108805931 108806005 -10938893 + (TA)n Simple_repeat Simple_repeat 1 74 0 237 206 29 0 chr13 108806092 108806160 -10938738 + (TA)n Simple_repeat Simple_repeat 2 71 0 449 17 17 0 chr13 108806162 108806220 -10938678 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 724 181 0 0 chr13 108806225 108806341 -10938557 - FLAM_C SINE Alu -27 116 1 23 33 0 0 chr13 108806701 108806731 -10938167 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 108807665 108807703 -10937195 + AT_rich Low_complexity Low_complexity 1 38 0 357 210 43 19 chr13 108808856 108809018 -10935880 + (TA)n Simple_repeat Simple_repeat 2 167 0 256 253 40 29 chr13 108808948 108809122 -10935776 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 2644 263 67 40 chr13 108809152 108811924 -10932974 + L1M4 LINE L1 2 2922 -3722 1624 131 0 0 chr13 108811924 108812153 -10932745 + AluSg/x SINE Alu 68 296 -14 1448 228 66 19 chr13 108813734 108814098 -10930800 - MSTD LTR MaLR -15 381 1 19340 35 5 1 chr13 108814320 108816698 -10928200 - L1P LINE L1 -1116 5030 2643 21 36 0 0 chr13 108817046 108817074 -10927824 + AT_rich Low_complexity Low_complexity 1 28 0 260 275 29 80 chr13 108819820 108819958 -10924940 - L2 LINE L2 -236 3077 2947 426 108 0 7 chr13 108822600 108822670 -10922228 - L1PA15 LINE L1 -204 5927 5861 13177 155 60 8 chr13 108824016 108826328 -10918570 + Tigger2 DNA MER2_type 286 2718 0 252 260 58 10 chr13 108826519 108826623 -10918275 - L1ME LINE L1 -485 5636 5528 215 239 15 30 chr13 108827103 108827170 -10917728 + GA-rich Low_complexity Low_complexity 1 66 0 340 297 34 25 chr13 108827598 108827716 -10917182 + MIR SINE MIR 18 136 -126 703 125 24 8 chr13 108828566 108828699 -10916199 + MSTA LTR MaLR 1 139 -236 556 198 36 9 chr13 108828694 108828805 -10916093 + MER58B DNA MER1_type 217 330 -11 * 1969 148 36 36 chr13 108828939 108829303 -10915595 + THE1B LTR MaLR 1 364 0 812 174 42 0 chr13 108830329 108830519 -10914379 + L1MA8 LINE L1 6094 6291 0 14135 85 8 10 chr13 108831485 108831902 -10912996 - L1PA6 LINE L1 -257 5897 5481 2259 92 3 0 chr13 108831902 108832195 -10912703 - AluY SINE Alu -17 294 1 14135 85 8 10 chr13 108832195 108834310 -10910588 - L1PA6 LINE L1 -673 5481 3370 243 61 0 0 chr13 108834613 108834646 -10910252 + (CA)n Simple_repeat Simple_repeat 1 33 0 270 306 68 34 chr13 108834990 108835137 -10909761 + MIR SINE MIR 25 176 -86 247 299 0 0 chr13 108835448 108835515 -10909383 + (TG)n Simple_repeat Simple_repeat 2 68 0 242 419 106 3 chr13 108835655 108835975 -10908923 + L2 LINE L2 2043 2395 -919 1865 123 102 3 chr13 108836285 108836569 -10908329 - AluSx SINE Alu 0 312 1 321 125 0 18 chr13 108836645 108836701 -10908197 - MLT2A1 LTR ERVL 0 453 399 240 231 28 39 chr13 108836701 108836883 -10908015 + (TA)n Simple_repeat Simple_repeat 1 180 0 223 149 0 30 chr13 108836899 108836966 -10907932 + (TA)n Simple_repeat Simple_repeat 2 66 0 2718 101 27 14 chr13 108836969 108837383 -10907515 - MLT2A1 LTR ERVL -25 419 1 2612 98 5 11 chr13 108837529 108837906 -10906992 - THE1C LTR MaLR 0 375 1 7939 137 39 51 chr13 108838040 108839475 -10905423 - THE1C-int LTR MaLR -162 1418 1 2376 117 53 6 chr13 108839475 108839833 -10905065 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 108839979 108840014 -10904884 + AT_rich Low_complexity Low_complexity 1 35 0 521 245 6 38 chr13 108840409 108840568 -10904330 + MIR SINE MIR 88 241 -21 42 48 0 0 chr13 108841555 108841618 -10903280 + AT_rich Low_complexity Low_complexity 1 63 0 50 31 0 0 chr13 108841870 108841934 -10902964 + AT_rich Low_complexity Low_complexity 1 64 0 249 108 0 0 chr13 108842093 108842130 -10902768 + (CA)n Simple_repeat Simple_repeat 2 38 0 332 247 73 91 chr13 108842393 108842744 -10902154 - MLT1J1 LTR MaLR 0 446 8 203 250 17 17 chr13 108844754 108844814 -10900084 + L2 LINE L2 3250 3309 -4 3930 210 38 25 chr13 108846675 108848015 -10896883 - L1MB5 LINE L1 0 6174 4815 308 358 57 16 chr13 108848083 108848276 -10896622 - L3 LINE CR1 -2 1575 1375 6605 146 30 9 chr13 108848554 108849685 -10895213 - Tigger1 DNA MER2_type -17 2401 1247 3214 158 198 43 chr13 108849675 108850398 -10894500 - Tigger1 DNA MER2_type -1582 836 2 * 357 250 38 30 chr13 108852650 108852782 -10892116 + MER94 DNA DNA 2 134 0 23 33 0 0 chr13 108853258 108853288 -10891610 + AT_rich Low_complexity Low_complexity 1 30 0 2272 143 5 27 chr13 108853665 108854037 -10890861 - THE1B LTR MaLR 0 364 1 214 200 0 0 chr13 108854336 108854376 -10890522 + (TA)n Simple_repeat Simple_repeat 2 41 0 666 303 50 7 chr13 108854902 108855202 -10889696 + L2 LINE L2 2152 2464 -850 714 238 0 25 chr13 108855204 108855364 -10889534 - MER45A DNA AcHobo -7 171 16 383 308 139 56 chr13 108855498 108855907 -10888991 + L2 LINE L2 2532 2974 -340 2042 148 47 16 chr13 108855930 108856294 -10888604 - THE1C LTR MaLR 0 375 1 6045 127 69 11 chr13 108856294 108857240 -10887658 - THE1C-int LTR MaLR 0 1580 580 4953 148 58 1 chr13 108857238 108858044 -10886854 - THE1C-int LTR MaLR -726 854 3 * 2039 142 56 11 chr13 108858046 108858405 -10886493 - THE1C LTR MaLR 0 375 1 294 200 78 33 chr13 108858990 108859080 -10885818 + MLT1I LTR MaLR 316 409 0 184 322 22 33 chr13 108860250 108860340 -10884558 - MIR SINE MIR -142 120 32 24 56 0 42 chr13 108861165 108861236 -10883662 + AT_rich Low_complexity Low_complexity 1 68 0 2486 102 8 6 chr13 108861724 108862077 -10882821 - THE1A LTR MaLR 0 355 2 9896 119 42 13 chr13 108862078 108863613 -10881285 - THE1A-int LTR MaLR 0 1580 1 2203 102 2 99 chr13 108863613 108864006 -10880892 - THE1A LTR MaLR 0 355 1 1446 135 32 0 chr13 108865541 108865793 -10879105 + L1MA9 LINE L1 6016 6275 -37 1513 173 36 39 chr13 108867308 108867615 -10877283 + AluJb SINE Alu 1 306 -6 466 298 84 40 chr13 108867879 108868329 -10876569 + L2 LINE L2 2831 3300 -13 198 0 0 0 chr13 108868329 108868351 -10876547 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 210 273 45 34 chr13 108868962 108869050 -10875848 + MIR SINE MIR 54 142 -120 503 263 168 33 chr13 108870348 108870652 -10874246 - L1MC/D LINE L1 -440 5681 5354 22 0 0 0 chr13 108871830 108871852 -10873046 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 108872222 108872244 -10872654 + AT_rich Low_complexity Low_complexity 1 22 0 715 223 54 0 chr13 108873153 108873319 -10871579 + L1MB1 LINE L1 5992 6166 -2 2086 96 45 0 chr13 108873841 108874132 -10870766 + AluSp SINE Alu 1 304 -9 209 358 22 29 chr13 108874573 108874710 -10870188 - L3 LINE CR1 -1023 554 419 471 335 147 38 chr13 108874823 108875403 -10869495 + L3 LINE CR1 684 1326 -251 1123 155 43 3 chr13 108878099 108878357 -10866541 + MER46B DNA MER2_type 8 236 0 22 0 0 0 chr13 108878457 108878479 -10866419 + AT_rich Low_complexity Low_complexity 1 22 0 2107 133 7 0 chr13 108878757 108879057 -10865841 + AluSx SINE Alu 3 304 -8 187 330 104 19 chr13 108879207 108879313 -10865585 - L2 LINE L2 -31 3282 3168 1562 162 3 67 chr13 108879915 108880230 -10864668 - AluY SINE Alu -16 295 1 248 257 29 29 chr13 108880234 108880304 -10864594 - MER5A DNA MER1_type -117 72 3 4033 212 20 0 chr13 108880313 108881198 -10863700 + L1 LINE L1 3817 4719 -1427 595 155 165 77 chr13 108881198 108881392 -10863506 + MSTA LTR MaLR 1 211 -217 6555 209 47 2 chr13 108881400 108882667 -10862231 + MSTA-int LTR MaLR 329 1651 0 1757 187 104 20 chr13 108882667 108883062 -10861836 + MSTA LTR MaLR 1 428 0 2719 207 21 6 chr13 108883063 108883819 -10861079 + L1P4 LINE L1 4716 5479 -687 478 266 130 29 chr13 108884003 108884277 -10860621 - L1ME LINE L1 -499 5671 5354 216 0 0 0 chr13 108884849 108884873 -10860025 + (TG)n Simple_repeat Simple_repeat 2 25 0 1000 49 0 0 chr13 108885319 108885442 -10859456 + AluY SINE Alu 189 311 0 363 299 19 65 chr13 108886851 108887112 -10857786 - MER112 DNA MER1_type -11 249 1 198 371 33 56 chr13 108890911 108891124 -10853774 - MIR SINE MIR -49 213 6 1848 139 79 17 chr13 108891280 108891633 -10853265 + THE1C LTR MaLR 1 375 0 5722 138 56 70 chr13 108891635 108892056 -10852842 + THE1C-int LTR MaLR 3 429 -1151 670 238 67 6 chr13 108892056 108892220 -10852678 - FAM SINE Alu -1 174 1 329 77 19 0 chr13 108892220 108892272 -10852626 - AluSg/x SINE Alu -166 134 82 5722 138 56 70 chr13 108892272 108893011 -10851887 + THE1C-int LTR MaLR 427 1142 -438 28 0 0 0 chr13 108893298 108893326 -10851572 + AT_rich Low_complexity Low_complexity 1 28 0 271 196 0 0 chr13 108894054 108894105 -10850793 - LTR33A LTR ERVL 0 523 473 231 321 98 11 chr13 108894331 108894515 -10850383 + MLT1K LTR MaLR 389 588 0 22 35 0 0 chr13 108895744 108895773 -10849125 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 108895839 108895861 -10849037 + AT_rich Low_complexity Low_complexity 1 22 0 1202 177 14 5 chr13 108896023 108896243 -10848655 + AluJo SINE Alu 81 302 -10 21 0 0 0 chr13 108897611 108897632 -10847266 + AT_rich Low_complexity Low_complexity 1 21 0 653 276 73 42 chr13 108898057 108898343 -10846555 - LTR16A1 LTR ERVL -2 455 161 3741 94 284 17 chr13 108898392 108899043 -10845855 + LTR12 LTR ERV1 1 825 -1 431 230 11 0 chr13 108899237 108899324 -10845574 - MER58 DNA MER1_type 0 2420 128 248 214 61 51 chr13 108899825 108899923 -10844975 + MLT1I LTR MaLR 281 379 -30 211 295 192 0 chr13 108900118 108900196 -10844702 - MIR SINE MIR -139 123 31 529 198 0 0 chr13 108900913 108901009 -10843889 - FLAM_C SINE Alu -32 111 16 374 281 44 7 chr13 108901141 108901276 -10843622 + L1M2 LINE L1 5325 5464 -836 24 77 0 0 chr13 108901299 108901351 -10843547 + AT_rich Low_complexity Low_complexity 1 52 0 34 55 0 0 chr13 108901484 108901539 -10843359 + AT_rich Low_complexity Low_complexity 1 55 0 288 130 0 0 chr13 108901781 108901827 -10843071 + (CA)n Simple_repeat Simple_repeat 2 47 0 281 265 181 39 chr13 108902083 108902287 -10842611 - MLT1H LTR MaLR -316 233 1 283 302 10 10 chr13 108902542 108902638 -10842260 - HERVL LTR ERVL -317 5337 5242 307 85 85 0 chr13 108903217 108903264 -10841634 - THE1B LTR MaLR 0 364 314 2080 115 20 0 chr13 108903364 108903668 -10841230 - THE1B LTR MaLR -54 310 1 364 316 37 32 chr13 108903785 108903972 -10840926 - LTR41 LTR ERVL -585 188 1 334 238 45 3 chr13 108904026 108904097 -10840801 + L1M2 LINE L1 5696 5782 -518 2282 165 52 0 chr13 108904097 108904498 -10840400 - MSTB LTR MaLR 0 426 5 334 238 45 3 chr13 108904498 108904538 -10840360 + L1M2 LINE L1 5782 5819 -481 1768 178 14 3 chr13 108904670 108904963 -10839935 - AluJb SINE Alu -16 296 1 768 102 19 0 chr13 108907783 108907891 -10837007 + THE1C LTR MaLR 2 111 -264 1095 144 10 59 chr13 108907893 108908095 -10836803 - THE1B LTR MaLR -2 362 171 6303 72 8 28 chr13 108908111 108908796 -10836102 - L1PA7 LINE L1 -1 6153 5489 2291 92 3 0 chr13 108908796 108909089 -10835809 - AluY SINE Alu -17 294 1 6303 72 8 28 chr13 108909089 108909306 -10835592 - L1PA7 LINE L1 -665 5489 5269 1065 139 5 38 chr13 108910257 108910466 -10834432 + L1MA2 LINE L1 6103 6304 0 226 331 44 52 chr13 108910729 108910865 -10834033 - MER5B DNA MER1_type 0 178 44 1150 247 73 35 chr13 108911089 108911160 -10833738 + L1M1 LINE L1 4653 4720 -1496 1220 223 0 78 chr13 108911160 108911492 -10833406 + AluJo SINE Alu 1 306 -6 1150 247 73 35 chr13 108911492 108912201 -10832697 + L1M1 LINE L1 4720 5473 -743 392 37 19 0 chr13 108912304 108912358 -10832540 + (CA)n Simple_repeat Simple_repeat 2 56 0 198 0 0 0 chr13 108912357 108912379 -10832519 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 198 0 0 0 chr13 108912463 108912485 -10832413 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2216 204 18 12 chr13 108912486 108912992 -10831906 - L1 LINE L1 -853 5293 4785 21 36 0 0 chr13 108913146 108913174 -10831724 + AT_rich Low_complexity Low_complexity 1 28 0 1859 350 48 30 chr13 108913182 108913951 -10830947 + L1ME1 LINE L1 39 821 -5575 33 56 0 0 chr13 108914719 108914773 -10830125 + AT_rich Low_complexity Low_complexity 1 54 0 26 98 0 0 chr13 108914983 108915065 -10829833 + AT_rich Low_complexity Low_complexity 1 82 0 424 268 60 12 chr13 108915299 108915467 -10829431 - MER96B DNA MER1_type? -239 178 3 2167 263 68 16 chr13 108915483 108916702 -10828196 + L1ME1 LINE L1 1805 3058 -3157 2064 261 68 24 chr13 108916703 108917575 -10827323 + L1ME1 LINE L1 5297 6191 -44 304 248 37 0 chr13 108917511 108917620 -10827278 + L1MA10 LINE L1 6284 6396 -7 * 185 377 0 0 chr13 108917693 108917754 -10827144 + MIR SINE MIR 85 145 -63 518 167 0 29 chr13 108917901 108918003 -10826895 - L1PA7 LINE L1 0 6154 6056 240 143 0 0 chr13 108919047 108919089 -10825809 + (TA)n Simple_repeat Simple_repeat 2 43 0 1088 219 33 98 chr13 108919418 108919807 -10825091 + MLT1A1 LTR MaLR 1 364 -1 1822 130 0 80 chr13 108921882 108922206 -10822692 + AluSx SINE Alu 7 304 -8 238 361 30 0 chr13 108922493 108922626 -10822272 - MIR SINE MIR -73 189 53 341 185 0 0 chr13 108922704 108922758 -10822140 - Charlie5 DNA MER1_type -2552 60 7 201 369 54 39 chr13 108923025 108923155 -10821743 + L2 LINE L2 3140 3271 -1 557 301 75 34 chr13 108924567 108925072 -10819826 - HAL1 LINE L1 -7 2500 1975 320 288 98 78 chr13 108925099 108925804 -10819094 - HAL1 LINE L1 -715 1792 1074 598 307 68 26 chr13 108927381 108927984 -10816914 - L1M4 LINE L1 -3409 2737 2110 281 271 29 0 chr13 108928368 108928438 -10816460 - MIR SINE MIR -182 80 9 353 353 120 18 chr13 108928952 108929278 -10815620 + L3 LINE CR1 776 1134 -443 24 0 0 0 chr13 108931549 108931573 -10813325 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 108931660 108931680 -10813218 + (TG)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr13 108931922 108931945 -10812953 + AT_rich Low_complexity Low_complexity 1 23 0 215 318 12 24 chr13 108932113 108932198 -10812700 + MIR SINE MIR 94 177 -85 203 184 0 0 chr13 108932278 108932316 -10812582 + (TTA)n Simple_repeat Simple_repeat 3 40 0 26 82 0 0 chr13 108932888 108932949 -10811949 + AT_rich Low_complexity Low_complexity 1 61 0 24 53 0 0 chr13 108934905 108934943 -10809955 + AT_rich Low_complexity Low_complexity 1 38 0 312 120 0 0 chr13 108935531 108935581 -10809317 + (ATG)n Simple_repeat Simple_repeat 3 52 0 29 28 0 0 chr13 108935820 108935856 -10809042 + AT_rich Low_complexity Low_complexity 1 36 0 2041 133 38 25 chr13 108935938 108936306 -10808592 - THE1C LTR MaLR 0 375 3 9363 123 23 55 chr13 108936308 108937940 -10806958 - THE1C-int LTR MaLR 0 1580 1 1512 153 11 33 chr13 108937940 108938214 -10806684 - THE1C LTR MaLR 0 375 108 1941 156 21 43 chr13 108938215 108938587 -10806311 + THE1B LTR MaLR 1 364 0 11027 106 19 5 chr13 108938620 108940173 -10804725 + THE1B-int LTR MaLR 1 1574 -6 946 183 33 11 chr13 108940180 108940360 -10804538 + THE1B LTR MaLR 1 184 -180 6936 143 14 5 chr13 108940361 108941435 -10803463 + L1P3 LINE L1 1 1084 -5377 2949 162 0 4 chr13 108943086 108943585 -10801313 + L1PA15 LINE L1 5668 6164 -1 189 0 0 0 chr13 108946337 108946358 -10798540 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr13 108946696 108946721 -10798177 + AT_rich Low_complexity Low_complexity 1 25 0 2123 101 0 20 chr13 108947354 108947650 -10797248 - AluSg SINE Alu -8 302 13 3146 133 47 0 chr13 108949728 108950200 -10794698 + Charlie3 DNA MER1_type 7 500 -2210 * 3219 98 6 13 chr13 108950194 108950661 -10794237 + Charlie3 DNA MER1_type 2242 2705 -5 216 67 0 0 chr13 108951178 108951208 -10793690 + (CA)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr13 108951358 108951406 -10793492 + AT_rich Low_complexity Low_complexity 1 48 0 396 343 194 14 chr13 108951603 108951970 -10792928 - HAL1 LINE L1 -621 1886 1454 287 159 0 0 chr13 108951989 108952033 -10792865 - MLT1C LTR MaLR -7 460 417 595 209 39 0 chr13 108952074 108952227 -10792671 - L1 LINE L1 -824 5322 5164 384 328 47 47 chr13 108953522 108953821 -10791077 + L1ME LINE L1 5265 5563 -558 996 113 120 0 chr13 108954483 108954633 -10790265 - AluSg SINE Alu -105 205 38 246 299 29 7 chr13 108954685 108954822 -10790076 + HAL1 LINE L1 2242 2381 -126 938 171 19 0 chr13 108956127 108956285 -10788613 - L1M1 LINE L1 -7166 399 239 * 3341 200 5 5 chr13 108956276 108956907 -10787991 + L1M1 LINE L1 1258 1888 -5677 6695 134 39 11 chr13 108956907 108958120 -10786778 + L1M1 LINE L1 2177 3423 -4142 5419 190 25 20 chr13 108958170 108959392 -10785506 + L1M1 LINE L1 4484 5711 -1854 1172 289 227 21 chr13 108959400 108960656 -10784242 - L1 LINE L1 -2156 3990 2476 * 3998 248 50 17 chr13 108960653 108962800 -10782098 - L1MB8 LINE L1 -1 6177 3969 21 0 0 0 chr13 108962910 108962931 -10781967 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr13 108962988 108963025 -10781873 + AT_rich Low_complexity Low_complexity 1 37 0 319 311 109 56 chr13 108963065 108963798 -10781100 + L1M1 LINE L1 6048 6819 -746 26 50 0 0 chr13 108963871 108963911 -10780987 + AT_rich Low_complexity Low_complexity 1 40 0 206 236 14 69 chr13 108964013 108964085 -10780813 - MIR SINE MIR -70 192 125 1711 124 107 0 chr13 108964094 108964385 -10780513 - L1PA15 LINE L1 -9 6156 5835 1983 90 0 0 chr13 108964390 108964667 -10780231 - L1PA15 LINE L1 -1131 5015 4739 1412 134 26 0 chr13 108964669 108964970 -10779928 - L1PA15 LINE L1 -316 5849 5347 638 293 94 34 chr13 108964963 108965244 -10779654 + L1ME3A LINE L1 5474 5736 -434 * 2681 32 0 0 chr13 108965244 108965552 -10779346 - AluY SINE Alu -3 308 1 638 293 94 34 chr13 108965552 108965892 -10779006 + L1ME3A LINE L1 5736 6162 -8 342 67 0 0 chr13 108966870 108966915 -10777983 + (TG)n Simple_repeat Simple_repeat 2 46 0 1044 159 284 66 chr13 108967519 108967839 -10777059 + MLT1B LTR MaLR 1 390 0 22 80 0 0 chr13 108969017 108969067 -10775831 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr13 108970199 108970222 -10774676 + AT_rich Low_complexity Low_complexity 1 23 0 182 265 0 61 chr13 108970425 108970474 -10774424 - L3 LINE CR1 -29 1548 1503 232 200 0 0 chr13 108972348 108972393 -10772505 + L2 LINE L2 3269 3313 0 28 48 0 0 chr13 108973702 108973744 -10771154 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr13 108974033 108974058 -10770840 + AT_rich Low_complexity Low_complexity 1 25 0 1680 261 129 31 chr13 108974292 108975088 -10769810 - L1MC4a LINE L1 -1 7807 6934 332 307 93 0 chr13 108975276 108975416 -10769482 - L2 LINE L2 0 3313 3161 228 394 48 0 chr13 108975387 108975491 -10769407 - L2 LINE L2 -436 2878 2770 * 313 153 15 46 chr13 108975540 108975671 -10769227 + (TA)n Simple_repeat Simple_repeat 2 128 0 414 339 216 18 chr13 108975678 108976191 -10768707 - L2 LINE L2 -652 2662 2048 801 293 44 4 chr13 108976536 108976765 -10768133 - L2 LINE L2 -1279 2035 1798 833 227 0 0 chr13 108976767 108976930 -10767968 + FRAM SINE Alu 3 165 -11 297 320 48 0 chr13 108977816 108977919 -10766979 + MIR SINE MIR 36 143 -65 186 229 62 0 chr13 108978339 108978387 -10766511 - MIR SINE MIR -116 146 96 247 195 0 0 chr13 108978537 108978578 -10766320 + Tigger5 DNA MER2_type 1 41 -2282 394 193 11 23 chr13 108978603 108978691 -10766207 + Tigger5 DNA MER2_type 2237 2323 0 929 214 19 8 chr13 108979412 108979658 -10765240 - L1MA6 LINE L1 -265 5913 5682 225 0 0 0 chr13 108979662 108979687 -10765211 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr13 108979987 108980024 -10764874 + AT_rich Low_complexity Low_complexity 1 37 0 486 301 61 28 chr13 108980031 108980244 -10764654 - MIR SINE MIR -41 221 2 1226 26 0 13 chr13 108980402 108980555 -10764343 - L1PA5 LINE L1 0 6154 6004 2597 182 29 25 chr13 108980564 108981157 -10763741 - L1MA4 LINE L1 -8 6292 5698 194 284 196 0 chr13 108981350 108981452 -10763446 - MIR SINE MIR -62 200 79 182 333 0 28 chr13 108981879 108981951 -10762947 - MIR3 SINE MIR -2 206 137 456 325 0 18 chr13 108982632 108982795 -10762103 - MLT1A2 LTR MaLR -41 349 190 598 245 6 38 chr13 108982896 108983055 -10761843 - MLT1A2 LTR MaLR -220 154 1 529 281 24 0 chr13 108983138 108983305 -10761593 - Tigger8 DNA MER2_type -179 487 317 25 65 0 0 chr13 108983632 108983678 -10761220 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr13 108983942 108983970 -10760928 + AT_rich Low_complexity Low_complexity 1 28 0 3175 113 4 0 chr13 108983985 108984436 -10760462 - MLT2A2 LTR ERVL 0 453 1 458 343 90 33 chr13 108984865 108985232 -10759666 + L2 LINE L2 2926 3313 0 21 36 0 0 chr13 108985245 108985273 -10759625 + AT_rich Low_complexity Low_complexity 1 28 0 386 315 8 16 chr13 108986079 108986206 -10758692 - MIR SINE MIR 0 262 137 1408 228 120 78 chr13 108986359 108986681 -10758217 + L1MD2 LINE L1 5611 5918 -441 2033 100 4 0 chr13 108986681 108986962 -10757936 + AluSp SINE Alu 1 282 -31 1408 228 120 78 chr13 108986962 108987156 -10757742 + L1MD2 LINE L1 5918 6158 -201 198 0 0 0 chr13 108987156 108987178 -10757720 + (CA)n Simple_repeat Simple_repeat 1 22 0 1408 228 120 78 chr13 108987178 108987252 -10757646 + L1MD2 LINE L1 6158 6227 -132 248 317 0 65 chr13 108987253 108987376 -10757522 + MIR SINE MIR 98 212 -50 21005 100 81 7 chr13 108987779 108991050 -10753848 + L1P LINE L1 1462 4974 -1172 2319 57 0 13 chr13 108991397 108991697 -10753201 - AluY SINE Alu -15 296 1 311 274 129 33 chr13 108993542 108993783 -10751115 - L1ME4a LINE L1 -75 6046 5783 2009 140 0 7 chr13 108994553 108994853 -10750045 - AluSg SINE Alu -12 298 1 714 229 186 14 chr13 108995581 108995856 -10749042 + L1MC3 LINE L1 7457 7778 -7 22 35 0 0 chr13 108995856 108995885 -10749013 + AT_rich Low_complexity Low_complexity 1 29 0 344 304 130 0 chr13 108995885 108996000 -10748898 + FLAM_A SINE Alu 1 130 -3 558 120 56 0 chr13 108996013 108996121 -10748777 - L1MA9 LINE L1 -1 6311 6198 418 225 36 0 chr13 108996159 108996270 -10748628 + L1MC4 LINE L1 7928 8042 0 257 291 53 40 chr13 108996622 108996773 -10748125 + HAL1 LINE L1 1252 1404 -1103 2901 53 5 5 chr13 108996781 108997155 -10747743 - L1PA7 LINE L1 -6 6148 5775 22 0 0 0 chr13 108997975 108997997 -10746901 + AT_rich Low_complexity Low_complexity 1 22 0 39 0 0 0 chr13 108998517 108998556 -10746342 + AT_rich Low_complexity Low_complexity 1 39 0 331 280 10 30 chr13 108998578 108998678 -10746220 + L1MC4 LINE L1 6612 6709 -1333 247 222 0 0 chr13 108998708 108998762 -10746136 + LTR66 LTR ERVL 394 447 -163 1451 180 18 33 chr13 108998799 108999071 -10745827 - AluJo SINE Alu -44 268 1 24 32 0 0 chr13 108999746 108999777 -10745121 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr13 109000034 109000073 -10744825 + AT_rich Low_complexity Low_complexity 1 39 0 2037 121 3 7 chr13 109001117 109001423 -10743475 + AluSc SINE Alu 5 309 0 21 36 0 0 chr13 109002929 109002957 -10741941 + AT_rich Low_complexity Low_complexity 1 28 0 289 195 11 11 chr13 109003094 109003181 -10741717 + CT-rich Low_complexity Low_complexity 2 88 0 22 35 0 0 chr13 109004164 109004193 -10740705 + AT_rich Low_complexity Low_complexity 1 29 0 247 288 108 7 chr13 109004345 109004484 -10740414 - L1ME LINE L1 -4759 1456 1304 404 317 138 21 chr13 109004495 109004865 -10740033 - L1ME LINE L1 -5076 1129 791 822 237 0 17 chr13 109004922 109005099 -10739799 + MER58A DNA MER1_type 7 180 -44 23 33 0 0 chr13 109005922 109005952 -10738946 + AT_rich Low_complexity Low_complexity 1 30 0 2091 141 67 8 chr13 109006723 109007099 -10737799 - MER48 LTR ERV1 0 398 1 411 258 75 19 chr13 109007532 109007691 -10737207 - MLT1F LTR MaLR -8 534 367 306 322 41 8 chr13 109007722 109007843 -10737055 - MER63A DNA MER1_type -33 177 53 740 304 20 40 chr13 109007911 109008214 -10736684 - L1MC/D LINE L1 -2217 5591 5295 393 284 49 0 chr13 109008341 109008443 -10736455 - MER63A DNA MER1_type 0 210 104 757 226 36 32 chr13 109008497 109008693 -10736205 - L1MC/D LINE L1 -2051 4095 3896 4770 108 16 1 chr13 109008693 109009371 -10735527 - LTR12 LTR ERV1 0 688 1 757 226 36 32 chr13 109009371 109009426 -10735472 - L1MC/D LINE L1 -2250 3896 3843 3039 134 50 27 chr13 109010961 109011566 -10733332 + MER4B LTR ERV1 1 903 0 240 200 43 43 chr13 109011799 109011869 -10733029 + MER117 DNA MER1_type 124 193 -4 306 298 83 36 chr13 109011901 109012069 -10732829 + MIR SINE MIR 16 191 -71 2901 100 0 5 chr13 109012078 109012477 -10732421 + MLT2A1 LTR ERVL 1 397 -47 205 124 41 41 chr13 109012484 109012581 -10732317 + (TA)n Simple_repeat Simple_repeat 1 97 0 282 99 37 25 chr13 109012799 109012880 -10732018 + (TA)n Simple_repeat Simple_repeat 2 83 0 32 79 0 26 chr13 109012893 109013007 -10731891 + AT_rich Low_complexity Low_complexity 1 111 0 275 118 59 0 chr13 109013043 109013094 -10731804 + MLT2A1 LTR ERVL 400 453 0 182 323 0 15 chr13 109013095 109013160 -10731738 + MIR SINE MIR 199 262 0 1894 166 13 38 chr13 109013425 109013798 -10731100 + THE1B LTR MaLR 1 364 0 25 51 0 0 chr13 109014045 109014084 -10730814 + AT_rich Low_complexity Low_complexity 1 39 0 28 61 0 0 chr13 109014210 109014259 -10730639 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr13 109015312 109015340 -10729558 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 109015894 109015923 -10728975 + AT_rich Low_complexity Low_complexity 1 29 0 208 121 0 0 chr13 109015961 109015994 -10728904 + (TC)n Simple_repeat Simple_repeat 1 33 0 513 47 0 0 chr13 109016056 109016120 -10728778 + (TG)n Simple_repeat Simple_repeat 2 65 0 249 57 0 0 chr13 109016119 109016154 -10728744 + (CTAG)n Simple_repeat Simple_repeat 1 35 0 * 1983 134 10 0 chr13 109016222 109016527 -10728371 + AluSx SINE Alu 1 308 -4 274 171 13 13 chr13 109016531 109016607 -10728291 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 1850 116 58 4 chr13 109016927 109017202 -10727696 - AluSg SINE Alu -20 290 1 194 128 26 0 chr13 109018055 109018094 -10726804 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 35 63 0 0 chr13 109018559 109018622 -10726276 + AT_rich Low_complexity Low_complexity 1 63 0 22 88 0 0 chr13 109019404 109019461 -10725437 + AT_rich Low_complexity Low_complexity 1 57 0 396 0 0 0 chr13 109019778 109019822 -10725076 + (TA)n Simple_repeat Simple_repeat 2 45 0 2897 6 0 0 chr13 109019822 109020136 -10724762 - AluYb8 SINE Alu -4 314 1 1024 39 0 0 chr13 109020231 109020359 -10724539 - L1PA4 LINE L1 -3 6152 6025 965 16 8 8 chr13 109020514 109020641 -10724257 + L1P LINE L1 5289 5415 -740 2599 59 0 0 chr13 109020998 109021305 -10723593 - AluSg SINE Alu -3 307 1 676 232 0 0 chr13 109021310 109021435 -10723463 - FLAM_A SINE Alu -8 125 1 292 250 0 0 chr13 109021452 109021520 -10723378 + MIR SINE MIR 195 262 0 1958 144 7 0 chr13 109021769 109022074 -10722824 - AluSp SINE Alu -6 307 1 594 319 66 43 chr13 109022082 109022646 -10722252 - L1ME4a LINE L1 -234 5887 5311 451 279 180 41 chr13 109022654 109022966 -10721932 - L1ME4a LINE L1 -844 5302 4942 712 298 109 33 chr13 109023269 109023689 -10721209 + LTR16B LTR ERVL 10 461 -3 1025 182 20 5 chr13 109024053 109024251 -10720647 + MLT1D LTR MaLR 1 201 -304 804 220 84 26 chr13 109024603 109024858 -10720040 + L1ME1 LINE L1 5915 6182 -2 206 209 0 23 chr13 109024887 109024930 -10719968 + L2 LINE L2 3222 3263 -9 1237 216 126 9 chr13 109025810 109026152 -10718746 + L1MC4a LINE L1 7426 7807 -1 2192 123 10 0 chr13 109027594 109027896 -10717002 - AluSx SINE Alu -7 305 1 298 265 88 10 chr13 109027962 109028064 -10716834 + MIR SINE MIR 17 126 -82 553 80 0 23 chr13 109028083 109028171 -10716727 - AluJ/FRAM SINE Alu -7 305 220 270 0 0 0 chr13 109029102 109029132 -10715766 + (TG)n Simple_repeat Simple_repeat 2 31 0 210 299 81 0 chr13 109029533 109029620 -10715278 + L2 LINE L2 1814 1907 -1407 1670 316 25 48 chr13 109029756 109030749 -10714149 + L1M3 LINE L1 376 1345 -5518 372 258 125 8 chr13 109030860 109030988 -10713910 - HAL1 LINE L1 -2364 143 1 313 255 21 0 chr13 109030993 109031087 -10713811 - L1ME LINE L1 -297 5824 5729 632 247 96 60 chr13 109031226 109031477 -10713421 + MIR SINE MIR 2 261 -1 907 99 0 0 chr13 109032003 109032124 -10712774 - AluSg/x SINE Alu -6 306 186 317 187 27 27 chr13 109032224 109032299 -10712599 + L1M3 LINE L1 2873 2947 -3916 1662 309 68 22 chr13 109032349 109033119 -10711779 + ERVL LTR ERVL 4459 5263 -501 1927 155 2 86 chr13 109033344 109033764 -10711134 + L1M3 LINE L1 6070 6454 -596 3016 228 139 34 chr13 109033865 109034941 -10709957 + L2 LINE L2 1922 3129 -184 538 252 156 66 chr13 109035566 109036035 -10708863 + MLT1J LTR MaLR 1 511 0 2854 198 52 46 chr13 109036121 109036757 -10708141 - MER21B LTR ERV1 -71 792 153 220 299 11 11 chr13 109037118 109037205 -10707693 + T-rich Low_complexity Low_complexity 4 90 0 389 292 255 8 chr13 109037269 109037536 -10707362 - L2 LINE L2 0 3272 2940 507 285 85 18 chr13 109039013 109039178 -10705720 - MIR SINE MIR 0 262 87 2188 225 36 23 chr13 109039180 109039709 -10705189 + MLT1F LTR MaLR 1 536 -6 182 299 78 39 chr13 109039721 109039798 -10705100 - MIR SINE MIR -175 87 8 249 191 0 0 chr13 109039858 109039900 -10704998 - MIR SINE MIR -117 145 104 332 149 0 0 chr13 109039916 109039963 -10704935 + Alu SINE Alu 1 47 -255 797 144 133 16 chr13 109040211 109040484 -10704414 - MLT1E1 LTR MaLR -301 353 1 304 313 95 0 chr13 109041532 109041638 -10703260 + MIR SINE MIR 34 148 -66 752 200 50 6 chr13 109042426 109042586 -10702312 - MER5B DNA MER1_type 0 178 12 25 0 0 0 chr13 109043803 109043828 -10701070 + GC_rich Low_complexity Low_complexity 1 25 0 208 320 200 0 chr13 109045383 109045483 -10699415 + L2 LINE L2 3132 3251 -21 281 275 150 25 chr13 109045519 109045639 -10699259 - MIR SINE MIR 0 262 128 266 264 33 33 chr13 109045725 109045816 -10699082 - MIR SINE MIR -150 112 22 5303 38 1 19 chr13 109045972 109046637 -10698261 - L1PA4 LINE L1 -6 6149 5497 329 309 79 47 chr13 109046988 109047305 -10697593 - L1M4 LINE L1 -3475 2671 2345 298 350 77 63 chr13 109049346 109049760 -10695138 + L2 LINE L2 1988 2407 -907 274 383 32 36 chr13 109049817 109050125 -10694773 + L2 LINE L2 2580 2886 -428 21 0 0 0 chr13 109050346 109050367 -10694531 + AT_rich Low_complexity Low_complexity 1 21 0 1351 215 50 61 chr13 109050511 109050874 -10694024 - MLT1A1 LTR MaLR -6 359 1 24 100 0 0 chr13 109050914 109050994 -10693904 + AT_rich Low_complexity Low_complexity 1 80 0 791 341 40 18 chr13 109051375 109051774 -10693124 - MER90 LTR ERV1 -20 555 148 482 323 26 26 chr13 109051879 109052071 -10692827 + MLT1I LTR MaLR 98 289 -120 929 255 70 61 chr13 109054624 109055298 -10689600 - L1MC5 LINE L1 -36 7925 7246 184 389 89 6 chr13 109055446 109055603 -10689295 - L2 LINE L2 -4 3268 3099 489 318 80 25 chr13 109056119 109056518 -10688380 - MLT1K LTR MaLR 0 588 168 2167 97 3 23 chr13 109056979 109057288 -10687610 - AluSc SINE Alu -6 303 1 558 217 125 0 chr13 109057905 109058057 -10686841 - MER45A DNA AcHobo -5 173 3 3820 113 18 6 chr13 109058820 109059446 -10685452 + L1MA1 LINE L1 5668 6300 -2 25 0 0 0 chr13 109059447 109059472 -10685426 + AT_rich Low_complexity Low_complexity 1 25 0 2357 89 3 3 chr13 109059480 109059784 -10685114 + AluSc SINE Alu 1 304 -5 324 314 151 12 chr13 109060591 109060763 -10684135 - L2 LINE L2 -7 3306 3111 252 269 0 0 chr13 109061664 109061731 -10683167 + (TA)n Simple_repeat Simple_repeat 1 67 0 227 253 66 11 chr13 109061958 109062049 -10682849 - MIR SINE MIR -1 261 166 2814 295 142 35 chr13 109062449 109064251 -10680647 - L2 LINE L2 -548 2766 774 2267 66 0 56 chr13 109064992 109065297 -10679601 + AluY SINE Alu 1 288 -23 270 0 0 0 chr13 109065629 109065659 -10679239 + (TA)n Simple_repeat Simple_repeat 2 31 0 361 315 55 17 chr13 109065809 109066018 -10678880 - MIR SINE MIR -3 259 43 2346 107 0 0 chr13 109066026 109066335 -10678563 - AluSc SINE Alu 0 309 1 246 224 17 43 chr13 109066431 109066547 -10678351 + L1ME4a LINE L1 6006 6118 -3 2849 143 34 34 chr13 109067699 109068206 -10676692 - MER50 LTR ERV1 -197 537 28 180 0 0 0 chr13 109068206 109068226 -10676672 + (CCCTG)n Simple_repeat Simple_repeat 5 24 0 2849 143 34 34 chr13 109068226 109068255 -10676643 - MER50 LTR ERV1 -705 29 1 2104 123 3 0 chr13 109069845 109070145 -10674753 + AluSx SINE Alu 1 301 -11 318 132 0 0 chr13 109070344 109070397 -10674501 + (TG)n Simple_repeat Simple_repeat 2 54 0 195 146 0 0 chr13 109071266 109071307 -10673591 + (GA)n Simple_repeat Simple_repeat 2 42 0 188 135 0 19 chr13 109071748 109071800 -10673098 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 447 294 30 0 chr13 109072201 109072369 -10672529 - L1PA16 LINE L1 -255 5913 5737 1328 186 16 0 chr13 109072369 109072610 -10672288 + L1PA16 LINE L1 5913 6158 -8 447 294 30 0 chr13 109072610 109072638 -10672260 - L1MB1 LINE L1 -431 5737 5711 1731 159 30 3 chr13 109072653 109072955 -10671943 + AluSx SINE Alu 1 310 -2 30 0 0 0 chr13 109072963 109072993 -10671905 + AT_rich Low_complexity Low_complexity 1 30 0 420 262 109 27 chr13 109072997 109073180 -10671718 + L1M4 LINE L1 3260 3457 -2689 987 206 45 65 chr13 109073215 109073507 -10671391 + L1MB2 LINE L1 5883 6168 -3 472 290 119 3 chr13 109073565 109073875 -10671023 + L1M4 LINE L1 3600 3945 -2201 228 73 0 0 chr13 109074290 109074331 -10670567 - LTR66 LTR ERVL -171 439 399 677 265 54 11 chr13 109074546 109074806 -10670092 + L1MDa LINE L1 1818 2088 -4452 580 279 72 36 chr13 109074814 109075090 -10669808 + L1MDa LINE L1 2345 2630 -4091 2442 201 43 29 chr13 109075091 109075784 -10669114 - Charlie1 DNA MER1_type -10 2751 2049 22 35 0 0 chr13 109075956 109075985 -10668913 + AT_rich Low_complexity Low_complexity 1 29 0 2143 127 0 0 chr13 109076138 109076446 -10668452 - AluSc SINE Alu -1 308 1 836 157 0 174 chr13 109076573 109076739 -10668159 + MLT2B1 LTR ERVL 308 423 -92 204 40 0 0 chr13 109076739 109076764 -10668134 + (CA)n Simple_repeat Simple_repeat 2 26 0 836 157 0 174 chr13 109076764 109076833 -10668065 + MLT2B1 LTR ERVL 423 502 -13 1607 275 96 17 chr13 109076854 109078018 -10666880 + L1MC4 LINE L1 6458 7862 -180 24 0 0 0 chr13 109078125 109078149 -10666749 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr13 109078165 109078200 -10666698 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 109078522 109078551 -10666347 + AT_rich Low_complexity Low_complexity 1 29 0 223 315 34 0 chr13 109078989 109079078 -10665820 + MIR SINE MIR 79 170 -92 2065 78 30 34 chr13 109079254 109079550 -10665348 - AluY SINE Alu -16 295 1 240 86 0 0 chr13 109079795 109079874 -10665024 + (TG)n Simple_repeat Simple_repeat 1 114 0 240 86 0 0 chr13 109079874 109079909 -10664989 + (TG)n Simple_repeat Simple_repeat 2 36 0 225 100 33 17 chr13 109080996 109081056 -10663842 + A-rich Low_complexity Low_complexity 3 63 0 890 228 118 11 chr13 109083101 109083456 -10661442 + MER69 DNA AcHobo 2102 2494 -32 28 0 0 0 chr13 109083645 109083673 -10661225 + AT_rich Low_complexity Low_complexity 1 28 0 2164 114 10 0 chr13 109083899 109084205 -10660693 - AluY SINE Alu -2 309 1 21 57 0 0 chr13 109084486 109084521 -10660377 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chr13 109085371 109085414 -10659484 + AT_rich Low_complexity Low_complexity 1 43 0 1871 156 3 3 chr13 109087227 109087516 -10657382 - AluJb SINE Alu -23 289 1 604 308 40 9 chr13 109087517 109087744 -10657154 - MIR SINE MIR -14 248 15 417 117 0 0 chr13 109088230 109088290 -10656608 + THE1B LTR MaLR 1 60 -304 1611 141 53 11 chr13 109088669 109088953 -10655945 + THE1B LTR MaLR 69 364 0 1308 87 0 0 chr13 109090120 109090292 -10654606 - L1PA5 LINE L1 -3 6151 5980 454 309 171 0 chr13 109091584 109091736 -10653162 - MER5A DNA MER1_type -1 188 11 242 360 79 34 chr13 109091757 109091935 -10652963 + MIR SINE MIR 21 206 -56 24 53 0 0 chr13 109092964 109093002 -10651896 + AT_rich Low_complexity Low_complexity 1 38 0 317 358 68 24 chr13 109094101 109094308 -10650590 + MIR SINE MIR 47 262 0 1935 168 7 75 chr13 109094912 109095308 -10649590 + L1M2 LINE L1 4967 5323 -968 2157 98 30 3 chr13 109095308 109095756 -10649142 - AluSp SINE Alu 0 456 1 1935 168 7 75 chr13 109095756 109095985 -10648913 + L1M2 LINE L1 5323 5566 -725 660 324 258 20 chr13 109096076 109097182 -10647716 + L2 LINE L2 1166 2534 -780 249 33 0 0 chr13 109097359 109097389 -10647509 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 468 339 81 38 chr13 109097389 109098092 -10646806 + L2 LINE L2 2572 3303 -10 22 35 0 0 chr13 109103997 109104026 -10640872 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 109104614 109104652 -10640246 + AT_rich Low_complexity Low_complexity 1 38 0 944 144 0 0 chr13 109105266 109105412 -10639486 + L1PA12 LINE L1 6020 6165 -3 210 156 0 0 chr13 109107523 109107568 -10637330 + (TG)n Simple_repeat Simple_repeat 2 46 0 192 337 36 72 chr13 109108152 109108318 -10636580 + MIR3 SINE MIR 21 180 -28 212 0 36 0 chr13 109110450 109110478 -10634420 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 33 25 0 0 chr13 109111784 109111824 -10633074 + AT_rich Low_complexity Low_complexity 1 40 0 634 294 83 31 chr13 109112140 109112466 -10632432 - HsTC2c DNA Tc2 -42 687 345 355 230 0 30 chr13 109112462 109112562 -10632336 - HsTC2c DNA Tc2 -629 100 4 * 1736 183 0 13 chr13 109112784 109113085 -10631813 + AluJo SINE Alu 11 307 -5 22 70 0 0 chr13 109113121 109113164 -10631734 + AT_rich Low_complexity Low_complexity 1 43 0 2071 145 0 0 chr13 109113364 109113674 -10631224 - AluSq SINE Alu -3 310 1 21 0 0 0 chr13 109113945 109113966 -10630932 + AT_rich Low_complexity Low_complexity 1 21 0 371 39 0 0 chr13 109114288 109114340 -10630558 - AluY SINE Alu -9 291 246 33 25 0 0 chr13 109114552 109114592 -10630306 + AT_rich Low_complexity Low_complexity 1 40 0 200 184 20 0 chr13 109115615 109115664 -10629234 + (TA)n Simple_repeat Simple_repeat 1 50 0 288 214 8 26 chr13 109117017 109117134 -10627764 + (TAAA)n Simple_repeat Simple_repeat 2 116 0 21 71 0 0 chr13 109117821 109117863 -10627035 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr13 109117935 109117958 -10626940 + AT_rich Low_complexity Low_complexity 1 23 0 227 140 20 0 chr13 109118602 109118652 -10626246 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2285 181 29 2 chr13 109118656 109119066 -10625832 - MSTB LTR MaLR -5 421 1 2037 127 33 28 chr13 109120786 109121089 -10623809 + THE1B LTR MaLR 1 308 -56 186 43 0 0 chr13 109121089 109121112 -10623786 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2037 127 33 28 chr13 109121112 109121170 -10623728 + THE1B LTR MaLR 308 364 0 2094 131 0 3 chr13 109122913 109123218 -10621680 - AluSx SINE Alu -5 307 4 468 318 78 39 chr13 109123682 109123990 -10620908 + MLT1J2 LTR MaLR 1 320 -130 293 249 48 43 chr13 109124312 109124450 -10620448 + MER58 DNA MER1_type 22 116 -99 291 93 0 0 chr13 109124990 109125033 -10619865 + (TA)n Simple_repeat Simple_repeat 2 44 0 27 39 0 19 chr13 109125444 109125460 -10619438 + AT_rich Low_complexity Low_complexity 1 16 -35 2404 180 7 0 chr13 109125460 109125905 -10618993 - L1PA16 LINE L1 0 6166 5719 27 39 0 19 chr13 109125905 109125940 -10618958 + AT_rich Low_complexity Low_complexity 16 51 0 189 171 0 0 chr13 109126017 109126052 -10618846 + (TATG)n Simple_repeat Simple_repeat 2 36 0 278 247 31 10 chr13 109127334 109127431 -10617467 + GA-rich Low_complexity Low_complexity 2 100 0 2356 90 0 0 chr13 109128254 109128614 -10616284 - AluY SINE Alu 0 360 1 26 30 0 0 chr13 109129080 109129113 -10615785 + AT_rich Low_complexity Low_complexity 1 33 0 285 310 123 46 chr13 109129119 109129252 -10615646 - MIR SINE MIR -34 174 31 269 295 115 38 chr13 109129623 109129806 -10615092 - MLT1J LTR MaLR -171 340 144 1338 272 40 52 chr13 109130424 109130905 -10613993 - MLT1E LTR MaLR 0 593 119 242 309 44 0 chr13 109130909 109130977 -10613921 - MLT1E LTR MaLR -438 155 85 306 0 0 0 chr13 109131072 109131106 -10613792 + (TA)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr13 109131105 109131125 -10613773 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 2839 83 86 2 chr13 109131291 109131327 -10613571 - MLT2A1 LTR ERVL 0 444 412 186 43 0 0 chr13 109131327 109131350 -10613548 + (TA)n Simple_repeat Simple_repeat 2 24 0 2839 83 86 2 chr13 109131350 109131721 -10613177 - MLT2A1 LTR ERVL -32 412 3 6624 82 5 7 chr13 109131723 109132617 -10612281 - HERVL-A1 LTR ERVL 0 5654 4763 198 0 0 0 chr13 109132661 109132683 -10612215 + (TA)n Simple_repeat Simple_repeat 2 23 0 2063 226 35 98 chr13 109133067 109134074 -10610824 + L1ME LINE L1 3425 4367 -1779 226 261 216 8 chr13 109134081 109134215 -10610683 + MLT1E2 LTR MaLR 373 534 -92 1240 200 0 0 chr13 109134289 109134534 -10610364 - AluJo SINE Alu 0 322 78 283 172 35 0 chr13 109134534 109134592 -10610306 + MLT1D LTR MaLR 446 505 0 5700 78 9 0 chr13 109134627 109135387 -10609511 - L1PA10 LINE L1 -1 6167 5401 1647 251 57 4 chr13 109135395 109135916 -10608982 + L1ME LINE L1 5238 5776 -390 180 0 0 0 chr13 109137095 109137115 -10607783 + (TG)n Simple_repeat Simple_repeat 1 20 0 251 257 9 37 chr13 109137529 109137638 -10607260 + GA-rich Low_complexity Low_complexity 3 108 0 298 370 138 19 chr13 109137833 109138404 -10606494 + L2 LINE L2 1750 2388 -926 22 0 0 0 chr13 109138941 109138963 -10605935 + AT_rich Low_complexity Low_complexity 1 22 0 342 263 69 73 chr13 109139104 109139378 -10605520 + L1MCb LINE L1 3 275 -5770 777 140 29 0 chr13 109139783 109139919 -10604979 + L1MA5 LINE L1 6160 6299 -1 336 324 40 29 chr13 109140371 109140544 -10604354 + MIR SINE MIR 15 189 -73 30 45 0 0 chr13 109140630 109140674 -10604224 + AT_rich Low_complexity Low_complexity 1 44 0 252 86 0 0 chr13 109141410 109141445 -10603453 + (CA)n Simple_repeat Simple_repeat 1 35 0 191 185 0 19 chr13 109142402 109142456 -10602442 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 347 117 9 chr13 109142809 109143022 -10601876 - MLT1L LTR MaLR -379 236 1 227 218 30 30 chr13 109143201 109143302 -10601596 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 1713 173 10 10 chr13 109143986 109144293 -10600605 + AluSx SINE Alu 6 312 0 372 94 0 0 chr13 109144296 109144349 -10600549 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 25 65 0 0 chr13 109145492 109145538 -10599360 + AT_rich Low_complexity Low_complexity 1 46 0 231 61 0 0 chr13 109145797 109145830 -10599068 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5275 7 2 0 chr13 109146103 109146696 -10598202 + L1HS LINE L1 5562 6155 0 238 100 17 67 chr13 109147127 109147187 -10597711 + Charlie5 DNA MER1_type 2540 2596 -16 5267 102 15 31 chr13 109147187 109147999 -10596899 - L1PA13 LINE L1 -4 6159 5361 1687 166 73 17 chr13 109148208 109148563 -10596335 + THE1C LTR MaLR 1 375 0 1377 237 116 0 chr13 109149191 109149545 -10595353 + MSTD LTR MaLR 2 396 0 4665 257 68 57 chr13 109150476 109150726 -10594172 - L1M4c LINE L1 -2207 4437 4191 207 0 0 0 chr13 109150726 109150749 -10594149 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4665 257 68 57 chr13 109150749 109153360 -10591538 - L1M4c LINE L1 -2453 4191 1610 216 0 0 0 chr13 109153360 109153384 -10591514 + (TG)n Simple_repeat Simple_repeat 2 25 0 1923 125 0 14 chr13 109153385 109153729 -10591169 - AluSq SINE Alu 0 340 1 4665 257 68 57 chr13 109153729 109154516 -10590382 - L1M4c LINE L1 -5034 1610 833 234 0 0 0 chr13 109154516 109154542 -10590356 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 4665 257 68 57 chr13 109154542 109155077 -10589821 - L1M4c LINE L1 -5811 833 1 1028 242 34 72 chr13 109155117 109155588 -10589310 - LTR37B LTR ERV1 -5 463 11 638 281 162 37 chr13 109155636 109156052 -10588846 - MLT1G1 LTR MaLR -27 568 10 366 23 0 0 chr13 109157201 109157281 -10587617 + (CA)n Simple_repeat Simple_repeat 1 123 0 366 23 0 0 chr13 109157281 109157324 -10587574 + (CA)n Simple_repeat Simple_repeat 1 43 0 421 262 245 34 chr13 109158186 109158423 -10586475 + L2 LINE L2 3027 3313 0 1249 274 54 38 chr13 109158488 109158934 -10585964 + LTR40c LTR ERVL 1 453 -12 598 273 87 0 chr13 109159409 109159581 -10585317 + MER5A DNA MER1_type 1 187 -2 338 372 99 9 chr13 109159839 109160062 -10584836 - MIR SINE MIR -19 243 1 378 265 161 71 chr13 109161207 109161418 -10583480 + MIR SINE MIR 2 231 -31 1189 198 63 90 chr13 109161462 109161795 -10583103 + L1MD2 LINE L1 6023 6346 -13 576 183 78 0 chr13 109161809 109161924 -10582974 + L1MC1 LINE L1 6208 6331 -2 30 0 0 0 chr13 109162302 109162332 -10582566 + AT_rich Low_complexity Low_complexity 1 30 0 2044 110 27 17 chr13 109162381 109162682 -10582216 + AluSx SINE Alu 1 304 -8 2109 120 3 0 chr13 109163084 109163383 -10581515 + AluSg SINE Alu 1 300 -10 609 303 30 45 chr13 109163433 109163697 -10581201 - MIR SINE MIR -1 261 2 879 213 0 0 chr13 109164750 109164910 -10579988 - FRAM SINE Alu -12 164 5 2317 121 26 0 chr13 109165760 109166106 -10578792 - THE1A LTR MaLR 0 355 1 345 192 13 0 chr13 109167272 109167350 -10577548 - MER116 DNA Mariner 0 80 2 35 83 0 0 chr13 109167804 109167888 -10577010 + AT_rich Low_complexity Low_complexity 1 84 0 21 36 0 0 chr13 109167994 109168022 -10576876 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 109168265 109168295 -10576603 + AT_rich Low_complexity Low_complexity 1 30 0 695 249 48 12 chr13 109168316 109168761 -10576137 + MLT1D LTR MaLR 1 502 -3 2045 254 44 51 chr13 109168767 109169428 -10575470 + MLT1D-int LTR MaLR 4 659 -712 255 79 0 0 chr13 109169607 109169645 -10575253 + (TTG)n Simple_repeat Simple_repeat 2 39 0 345 24 0 0 chr13 109170667 109170709 -10574189 + (CA)n Simple_repeat Simple_repeat 1 42 0 1863 275 45 15 chr13 109170851 109171651 -10573247 + L1M4 LINE L1 2110 2933 -3213 1393 242 86 108 chr13 109171672 109172075 -10572823 + L1M4 LINE L1 2251 2661 -3485 300 193 0 18 chr13 109172075 109172132 -10572766 + Tigger5 DNA MER2_type 1 56 -2267 * 412 153 14 14 chr13 109172100 109172172 -10572726 + Tigger5 DNA MER2_type 2251 2322 -1 * 1393 242 86 108 chr13 109172172 109172704 -10572194 + L1M4 LINE L1 2701 3259 -2887 406 291 112 15 chr13 109172784 109172990 -10571908 + L1M4 LINE L1 3884 4109 -2037 1144 263 47 90 chr13 109173023 109173769 -10571129 + L1M4 LINE L1 4267 4980 -1166 5081 132 32 0 chr13 109173788 109174601 -10570297 + L1PA16 LINE L1 5315 6153 -13 900 242 55 34 chr13 109174599 109174979 -10569919 + L1M4 LINE L1 5008 5395 -751 * 180 0 0 0 chr13 109175525 109175545 -10569353 + (T)n Simple_repeat Simple_repeat 1 20 0 2338 98 0 0 chr13 109175621 109175928 -10568970 - AluSc SINE Alu -2 307 1 4423 33 2 0 chr13 109175954 109176494 -10568404 - L1PA3 LINE L1 -1269 4877 4337 7377 39 3 0 chr13 109176505 109177774 -10567124 + L1PA3 LINE L1 4884 6155 0 21 36 0 0 chr13 109178060 109178088 -10566810 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr13 109178109 109178144 -10566754 + AT_rich Low_complexity Low_complexity 1 35 0 1927 118 4 4 chr13 109178438 109178741 -10566157 + AluSg SINE Alu 1 303 0 4874 120 19 54 chr13 109179405 109179695 -10565203 - L1PB2 LINE L1 -4 6147 5848 2197 62 0 84 chr13 109179695 109180018 -10564880 + AluY SINE Alu 1 296 -15 4874 120 19 54 chr13 109180018 109180345 -10564553 - L1PB2 LINE L1 -303 5848 5567 1969 138 23 7 chr13 109180345 109180650 -10564248 - AluSq SINE Alu 0 313 4 4874 120 19 54 chr13 109180650 109180895 -10564003 - L1PB2 LINE L1 -584 5567 5315 539 187 0 0 chr13 109180896 109181003 -10563895 + L1PB2 LINE L1 5190 5296 -850 376 325 62 12 chr13 109181158 109181318 -10563580 + MIR3 SINE MIR 32 199 -9 195 42 0 0 chr13 109181594 109181618 -10563280 + (A)n Simple_repeat Simple_repeat 1 24 0 205 355 16 24 chr13 109182081 109182205 -10562693 - L2 LINE L2 -1433 1881 1759 558 366 115 14 chr13 109182243 109182876 -10562022 + L2 LINE L2 1878 2574 -740 2254 127 11 30 chr13 109182919 109183290 -10561608 - THE1B LTR MaLR 0 364 1 211 318 50 100 chr13 109183290 109183529 -10561369 + L2 LINE L2 2991 3217 -96 32 26 0 0 chr13 109184075 109184114 -10560784 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr13 109186431 109186460 -10558438 + AT_rich Low_complexity Low_complexity 1 29 0 293 310 78 17 chr13 109186848 109186964 -10557934 - MIR SINE MIR -66 142 20 261 0 0 0 chr13 109187089 109187118 -10557780 + (A)n Simple_repeat Simple_repeat 1 29 0 2308 86 0 13 chr13 109187540 109187842 -10557056 - AluY SINE Alu -13 298 1 599 284 23 28 chr13 109188863 109189078 -10555820 - MIR SINE MIR -1 261 48 461 216 69 110 chr13 109189425 109189670 -10555228 + L2 LINE L2 3079 3313 0 243 121 0 61 chr13 109189971 109190037 -10554861 + (TATG)n Simple_repeat Simple_repeat 2 63 0 281 243 0 14 chr13 109190344 109190414 -10554484 + Tigger2a DNA MER2_type 2 70 -364 648 286 35 0 chr13 109190450 109190621 -10554277 - MER8 DNA MER2_type -62 177 1 366 61 0 0 chr13 109192340 109192389 -10552509 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 23 0 47 chr13 109192472 109192490 -10552408 + AT_rich Low_complexity Low_complexity 1 18 -23 2320 66 0 0 chr13 109192490 109192777 -10552121 - AluY SINE Alu -24 287 1 21 23 0 47 chr13 109192777 109192801 -10552097 + AT_rich Low_complexity Low_complexity 18 41 0 582 187 9 9 chr13 109193470 109193577 -10551321 - MER81 DNA DNA -4 110 4 709 273 98 49 chr13 109195756 109196163 -10548735 - LTR16A LTR ERVL -6 444 18 368 302 0 0 chr13 109196291 109196387 -10548511 - MIR SINE MIR -43 219 124 35 24 0 0 chr13 109196720 109196762 -10548136 + AT_rich Low_complexity Low_complexity 1 42 0 485 339 78 38 chr13 109197097 109197225 -10547673 + L2 LINE L2 2562 2683 -630 1863 140 7 10 chr13 109197225 109197525 -10547373 - AluSg SINE Alu -11 299 1 485 339 78 38 chr13 109197525 109197999 -10546899 + L2 LINE L2 2683 3177 -136 1585 204 7 3 chr13 109198047 109198356 -10546542 + AluJb SINE Alu 2 311 -1 621 72 0 0 chr13 109198365 109198448 -10546450 + (GAAAA)n Simple_repeat Simple_repeat 3 85 0 263 253 27 13 chr13 109198460 109198535 -10546363 + L2 LINE L2 3221 3296 -17 2045 112 0 46 chr13 109198937 109199242 -10545656 - AluSx SINE Alu -21 291 1 241 305 135 0 chr13 109199254 109199395 -10545503 - MER112 DNA MER1_type -34 226 67 396 51 0 0 chr13 109199434 109199493 -10545405 - L1MA3 LINE L1 0 6305 6247 648 70 0 0 chr13 109200241 109200327 -10544571 + (TTTC)n Simple_repeat Simple_repeat 4 89 0 1493 174 49 75 chr13 109203109 109203494 -10541404 + THE1C LTR MaLR 1 375 0 8575 144 52 35 chr13 109203496 109205049 -10539849 + MSTA-int LTR MaLR 3 1580 0 1597 167 134 33 chr13 109205049 109205438 -10539460 + MSTA LTR MaLR 1 428 0 207 0 0 0 chr13 109205483 109205506 -10539392 + (CA)n Simple_repeat Simple_repeat 1 23 0 297 0 0 0 chr13 109205757 109205790 -10539108 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 384 40 0 0 chr13 109205789 109205839 -10539059 + (TG)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chr13 109206793 109206817 -10538081 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr13 109207290 109207339 -10537559 + AT_rich Low_complexity Low_complexity 1 49 0 666 34 23 0 chr13 109209320 109209408 -10535490 + L1PA7 LINE L1 6061 6150 -4 28 61 0 0 chr13 109210388 109210437 -10534461 + AT_rich Low_complexity Low_complexity 1 49 0 586 244 66 20 chr13 109210449 109210646 -10534252 - L1ME2 LINE L1 -58 6106 5901 251 319 0 0 chr13 109210675 109210766 -10534132 + L1MC4 LINE L1 6615 6705 -1337 * 918 290 91 9 chr13 109210703 109211751 -10533147 - L1ME4a LINE L1 -157 6759 5631 1611 289 49 59 chr13 109211868 109212336 -10532562 - L1ME4a LINE L1 -1823 5118 4647 5437 42 9 20 chr13 109212336 109213032 -10531866 + L1PA5 LINE L1 5459 6146 -8 1611 289 49 59 chr13 109213032 109213621 -10531277 - L1ME4a LINE L1 -2294 4647 4071 344 281 52 48 chr13 109213765 109214014 -10530884 - L1ME4a LINE L1 -3625 3316 3067 344 288 96 19 chr13 109214036 109214312 -10530586 - L1MCc LINE L1 -4891 1532 1317 237 228 0 114 chr13 109214910 109214989 -10529909 - L1MCc LINE L1 -5970 453 384 5359 86 35 53 chr13 109215184 109216025 -10528873 - LTR12 LTR ERV1 -1 825 1 23 54 0 0 chr13 109216578 109216615 -10528283 + AT_rich Low_complexity Low_complexity 1 37 0 2037 150 33 22 chr13 109217003 109217363 -10527535 + THE1B LTR MaLR 1 364 0 11463 99 3 1 chr13 109217363 109218939 -10525959 + THE1B-int LTR MaLR 1 1580 0 2133 141 28 19 chr13 109218939 109219300 -10525598 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr13 109219489 109219513 -10525385 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 109220125 109220147 -10524751 + AT_rich Low_complexity Low_complexity 1 22 0 508 272 228 34 chr13 109222312 109222636 -10522262 + L2 LINE L2 796 1182 -2132 298 207 0 17 chr13 109223290 109223406 -10521492 + (TA)n Simple_repeat Simple_repeat 1 114 0 192 77 0 0 chr13 109223461 109223487 -10521411 + (TA)n Simple_repeat Simple_repeat 1 26 0 28 48 0 0 chr13 109224298 109224340 -10520558 + AT_rich Low_complexity Low_complexity 1 42 0 1239 219 38 0 chr13 109224457 109224722 -10520176 + L1MC1 LINE L1 6053 6327 -6 26 30 0 0 chr13 109225338 109225371 -10519527 + AT_rich Low_complexity Low_complexity 1 33 0 202 358 100 30 chr13 109226121 109226392 -10518506 - L2 LINE L2 -593 2721 2432 280 361 34 0 chr13 109228225 109228344 -10516554 - L2 LINE L2 -18 3295 3173 671 119 57 2 chr13 109228529 109228651 -10516247 - MSTA LTR MaLR -227 137 1 206 64 0 85 chr13 109229221 109229268 -10515630 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 2105 115 13 10 chr13 109229311 109229623 -10515275 - AluSq SINE Alu 0 313 1 522 219 9 0 chr13 109229915 109230020 -10514878 - AluJ SINE Alu -23 289 184 848 172 0 0 chr13 109230020 109230154 -10514744 - AluJ SINE Alu -178 134 1 314 368 115 27 chr13 109230164 109230460 -10514438 - L1MC/D LINE L1 -1993 5815 5494 350 70 56 0 chr13 109230694 109230765 -10514133 + (TG)n Simple_repeat Simple_repeat 2 76 0 521 236 83 101 chr13 109230932 109231208 -10513690 + L2 LINE L2 3040 3310 -3 22 0 0 0 chr13 109231635 109231657 -10513241 + AT_rich Low_complexity Low_complexity 1 22 0 285 75 0 0 chr13 109232895 109232935 -10511963 + (TG)n Simple_repeat Simple_repeat 1 40 0 23 33 0 0 chr13 109236297 109236327 -10508571 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr13 109237164 109237187 -10507711 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 109238048 109238072 -10506826 + AT_rich Low_complexity Low_complexity 1 24 0 190 306 0 28 chr13 109238127 109238199 -10506699 - MIR3 SINE MIR -18 190 121 394 304 113 5 chr13 109241489 109241683 -10503215 - L2 LINE L2 0 3313 3099 1795 201 11 8 chr13 109241714 109242078 -10502820 - MLT1A1 LTR MaLR 0 365 1 3367 235 74 42 chr13 109242078 109243675 -10501223 - MLT1A1-int LTR MaLR 0 1735 2 1354 213 7 30 chr13 109243679 109243975 -10500923 - MLT1A1 LTR MaLR -3 362 74 891 253 72 114 chr13 109243994 109244784 -10500114 + L1M4 LINE L1 3227 3983 -2163 341 331 17 17 chr13 109245089 109245270 -10499628 - L1M4 LINE L1 -2841 3305 3125 1460 227 50 42 chr13 109245290 109245673 -10499225 + L1MCa LINE L1 220 605 -5821 503 257 16 27 chr13 109245673 109245712 -10499186 - MLT2B2 LTR ERVL 0 515 477 633 49 0 0 chr13 109245712 109245793 -10499105 + (CA)n Simple_repeat Simple_repeat 2 82 0 503 257 16 27 chr13 109245793 109245940 -10498958 - MLT2B2 LTR ERVL -38 477 331 329 206 0 15 chr13 109245987 109246055 -10498843 + MLT2F LTR ERVL 2 68 -595 367 316 72 10 chr13 109246084 109246293 -10498605 + MLT2F LTR ERVL 161 382 -281 321 184 0 0 chr13 109246293 109246342 -10498556 - LOR1a LTR ERV1 0 497 449 249 159 0 0 chr13 109246343 109246387 -10498511 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 437 60 84 48 chr13 109246388 109246471 -10498427 + MLT2A1 LTR ERVL 359 444 0 289 311 118 37 chr13 109246553 109246642 -10498256 + MIR3 SINE MIR 60 165 -43 2191 168 28 28 chr13 109246642 109247076 -10497822 - Tigger2a DNA MER2_type 0 434 1 289 311 118 37 chr13 109247076 109247121 -10497777 + MIR3 SINE MIR 165 205 -3 21 0 0 0 chr13 109247237 109247258 -10497640 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 109247295 109247323 -10497575 + AT_rich Low_complexity Low_complexity 1 28 0 247 122 41 0 chr13 109249174 109249223 -10495675 - MLT2D LTR ERVL -8 512 462 551 48 37 80 chr13 109249228 109249416 -10495482 + (TA)n Simple_repeat Simple_repeat 1 180 0 1736 201 28 11 chr13 109249446 109249804 -10495094 - MLT2D LTR ERVL -49 365 2 359 300 91 62 chr13 109250151 109250635 -10494263 + L1MCa LINE L1 673 1170 -5246 26 30 0 0 chr13 109250918 109250951 -10493947 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr13 109251141 109251179 -10493719 + AT_rich Low_complexity Low_complexity 1 38 0 283 319 67 29 chr13 109251255 109251520 -10493378 + L1M4 LINE L1 3630 3910 -2236 1896 177 28 3 chr13 109251520 109251876 -10493022 + MLT1A1 LTR MaLR 1 365 0 283 319 67 29 chr13 109251876 109251924 -10492974 + L1M4 LINE L1 3910 3955 -2191 566 246 83 4 chr13 109251964 109252204 -10492694 - MER33 DNA MER1_type -40 284 26 245 331 22 0 chr13 109252580 109252719 -10492179 + L1M4 LINE L1 4427 4568 -1578 189 0 0 0 chr13 109252798 109252819 -10492079 + (T)n Simple_repeat Simple_repeat 1 21 0 2149 135 19 24 chr13 109253091 109253468 -10491430 - THE1C LTR MaLR 0 375 1 1414 213 3 78 chr13 109253506 109253877 -10491021 - MLT1A1 LTR MaLR 0 365 23 1860 166 81 39 chr13 109254053 109254462 -10490436 - MSTB LTR MaLR 0 426 1 216 135 0 0 chr13 109254602 109254639 -10490259 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 21 0 0 0 chr13 109254871 109254892 -10490006 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 109255313 109255345 -10489553 + AT_rich Low_complexity Low_complexity 1 32 0 1864 152 5 59 chr13 109256820 109257195 -10487703 - THE1A LTR MaLR 0 355 1 2539 168 0 2 chr13 109257418 109257836 -10487062 + MSTA LTR MaLR 1 417 -11 1004 203 0 14 chr13 109258194 109258401 -10486497 - Tigger5 DNA MER2_type 0 2323 2120 241 232 91 40 chr13 109258416 109258515 -10486383 - Tigger5 DNA MER2_type -2214 109 6 25 0 0 0 chr13 109259335 109259360 -10485538 + AT_rich Low_complexity Low_complexity 1 25 0 297 329 55 34 chr13 109259840 109259986 -10484912 + MIR SINE MIR 2 150 -112 263 241 30 68 chr13 109260085 109260218 -10484680 + MIR SINE MIR 71 198 -64 347 350 59 20 chr13 109260378 109260581 -10484317 + MIR SINE MIR 24 234 -28 477 288 130 6 chr13 109260599 109260776 -10484122 - MIR SINE MIR 0 262 64 2552 175 20 0 chr13 109260940 109261398 -10483500 + LTR24 LTR ERV1 1 467 0 223 326 48 37 chr13 109261487 109261663 -10483235 - MIR SINE MIR -48 214 39 996 178 54 12 chr13 109261872 109262094 -10482804 - MSTD LTR MaLR 0 396 124 571 343 41 38 chr13 109262392 109262710 -10482188 - L2 LINE L2 -1277 2037 1719 1713 136 4 8 chr13 109262802 109263067 -10481831 + AluSc SINE Alu 32 295 -14 245 185 56 0 chr13 109263642 109263696 -10481202 + MIR SINE MIR 117 173 -89 2359 128 5 10 chr13 109263712 109264095 -10480803 + L1MA4A LINE L1 5911 6291 -12 292 331 8 24 chr13 109267262 109267389 -10477509 + L1ME LINE L1 5521 5645 -476 304 319 244 0 chr13 109268517 109268746 -10476152 + MLT1H LTR MaLR 249 533 -16 525 323 36 20 chr13 109268778 109269026 -10475872 + MER20B DNA MER1_type 279 530 -253 1527 268 17 41 chr13 109269040 109269507 -10475391 - MER82 DNA MER2_type 0 653 198 820 182 36 24 chr13 109269942 109270107 -10474791 - MER82 DNA MER2_type -479 174 8 350 222 63 82 chr13 109270218 109270425 -10474473 + MER20B DNA MER1_type 534 736 -47 258 206 0 0 chr13 109271013 109271076 -10473822 + (CATA)n Simple_repeat Simple_repeat 2 64 0 4389 139 73 30 chr13 109272130 109272966 -10471932 + MER4D LTR ERV1 1 872 0 264 241 31 56 chr13 109273032 109273194 -10471704 + HAL1 LINE L1 1036 1193 -1314 567 319 151 19 chr13 109273328 109273745 -10471153 + HAL1 LINE L1 1387 1858 -649 303 28 0 0 chr13 109273765 109273801 -10471097 + (CAT)n Simple_repeat Simple_repeat 2 37 0 309 183 0 0 chr13 109274157 109274217 -10470681 + (CATA)n Simple_repeat Simple_repeat 4 63 0 23 0 0 0 chr13 109275195 109275218 -10469680 + AT_rich Low_complexity Low_complexity 1 23 0 4215 138 61 11 chr13 109276339 109277049 -10467849 - MER4D LTR ERV1 -158 745 1 429 286 60 43 chr13 109277667 109277852 -10467046 + MER92C LTR ERV1 1 188 -366 495 0 0 0 chr13 109277885 109277940 -10466958 + (TTA)n Simple_repeat Simple_repeat 3 57 0 14774 82 6 1 chr13 109277940 109280747 -10464151 - L1PA6 LINE L1 -18 6136 3322 38 61 0 0 chr13 109282778 109282844 -10462054 + AT_rich Low_complexity Low_complexity 1 66 0 2066 132 0 3 chr13 109282878 109283174 -10461724 - AluSq SINE Alu -18 295 1 678 241 218 0 chr13 109284756 109285022 -10459876 - MER5C DNA MER1_type 0 324 1 411 318 62 60 chr13 109285191 109285591 -10459307 + MLT1J LTR MaLR 1 401 -110 460 277 41 56 chr13 109285860 109286055 -10458843 - MIR SINE MIR -56 206 15 274 185 77 0 chr13 109286097 109286162 -10458736 - L1MB1 LINE L1 -14 6175 6106 704 239 7 13 chr13 109286163 109286318 -10458580 + Tigger7 DNA MER2_type 4 157 -548 452 326 80 22 chr13 109286416 109286640 -10458258 + MLT1I LTR MaLR 106 342 -67 751 104 8 40 chr13 109287348 109287473 -10457425 + THE1A LTR MaLR 1 121 -243 * 906 106 0 0 chr13 109287461 109287584 -10457314 + THE1A LTR MaLR 233 355 0 11454 102 3 1 chr13 109287584 109289160 -10455738 + THE1A-int LTR MaLR 1 1580 0 2328 116 8 8 chr13 109289160 109289515 -10455383 + THE1A LTR MaLR 1 355 0 1676 183 38 22 chr13 109289637 109289954 -10454944 - MER1B DNA MER1_type 0 339 18 34 0 0 0 chr13 109291418 109291452 -10453446 + AT_rich Low_complexity Low_complexity 1 34 0 2116 124 65 8 chr13 109291483 109291838 -10453060 - THE1C LTR MaLR 0 375 1 752 227 11 0 chr13 109294550 109294726 -10450172 - Charlie5 DNA MER1_type -198 2414 2237 449 256 1 0 chr13 109294737 109294861 -10450037 - Charlie5 DNA MER1_type -2490 122 1 23 0 0 0 chr13 109294929 109294952 -10449946 + AT_rich Low_complexity Low_complexity 1 23 0 2181 105 0 13 chr13 109295022 109295327 -10449571 - AluSq SINE Alu -12 301 1 24 0 0 0 chr13 109295498 109295522 -10449376 + AT_rich Low_complexity Low_complexity 1 24 0 1311 263 38 29 chr13 109295799 109296247 -10448651 + LTR40b LTR ERVL 1 452 -10 21 57 0 0 chr13 109296341 109296376 -10448522 + AT_rich Low_complexity Low_complexity 1 35 0 225 244 41 98 chr13 109297309 109297432 -10447466 + LTR67 LTR ERVL 427 542 -15 2014 274 30 22 chr13 109297837 109298612 -10446286 - MER20B DNA MER1_type -1 783 3 1075 295 168 40 chr13 109298909 109299542 -10445356 - MER50 LTR ERV1 -20 714 1 329 305 95 53 chr13 109299599 109299861 -10445037 + MER102b DNA MER1_type 22 294 -47 1788 180 3 13 chr13 109300954 109301265 -10443633 + AluJo SINE Alu 1 308 -4 647 150 28 24 chr13 109302077 109302405 -10442493 + (TATAA)n Simple_repeat Simple_repeat 1 329 0 2695 77 106 0 chr13 109302469 109302874 -10442024 - LTR7 LTR ERV1 -2 448 1 2298 109 48 13 chr13 109302874 109303251 -10441647 - HERVH LTR ERV1 0 7713 7324 1390 114 17 38 chr13 109303251 109303488 -10441410 - HERVH LTR ERV1 -1894 5819 5588 * 7521 130 14 9 chr13 109303468 109305180 -10439718 - HERVH LTR ERV1 -1858 5233 3492 964 133 7 0 chr13 109305170 109305320 -10439578 - HERVH LTR ERV1 -4423 3290 3140 * 18680 101 28 28 chr13 109305299 109308296 -10436602 - HERVH LTR ERV1 -4718 2995 1 2642 82 112 0 chr13 109308298 109308701 -10436197 - LTR7 LTR ERV1 -2 448 1 186 128 0 0 chr13 109308871 109308910 -10435988 + (T)n Simple_repeat Simple_repeat 1 39 0 443 244 129 42 chr13 109309513 109309899 -10434999 + HAL1b LINE L1 679 1098 -250 308 323 83 44 chr13 109310821 109311050 -10433848 - L2 LINE L2 -1109 2205 1968 40 59 0 0 chr13 109311078 109311146 -10433752 + AT_rich Low_complexity Low_complexity 1 68 0 275 329 127 13 chr13 109311148 109311306 -10433592 - L2 LINE L2 -1389 1925 1750 292 263 95 26 chr13 109311631 109311863 -10433035 + L1M4 LINE L1 2861 3108 -3038 474 185 0 0 chr13 109313160 109313241 -10431657 + FLAM_A SINE Alu 26 106 -36 410 157 0 14 chr13 109313237 109313307 -10431591 + FLAM SINE Alu 56 124 -19 * 44 75 0 0 chr13 109313325 109313418 -10431480 + AT_rich Low_complexity Low_complexity 1 93 0 1546 134 40 112 chr13 109313522 109313599 -10431299 - THE1C LTR MaLR -1 374 293 2081 139 3 3 chr13 109313599 109313902 -10430996 + AluSx SINE Alu 5 307 -5 315 0 0 0 chr13 109313902 109313937 -10430961 + (TA)n Simple_repeat Simple_repeat 1 35 0 1546 134 40 112 chr13 109313937 109314261 -10430637 - THE1C LTR MaLR -80 295 1 2103 84 0 4 chr13 109314551 109314825 -10430073 + AluY SINE Alu 1 273 -38 324 120 0 0 chr13 109314825 109314875 -10430023 + (CA)n Simple_repeat Simple_repeat 2 51 0 302 232 0 30 chr13 109314875 109314929 -10429969 - L1MC4 LINE L1 -1339 6703 6652 2859 53 3 0 chr13 109314929 109315288 -10429610 + L1PA5 LINE L1 5783 6142 -12 302 232 0 30 chr13 109315288 109315332 -10429566 - L1MC4 LINE L1 -1390 6652 6608 288 415 16 6 chr13 109315544 109315727 -10429171 - L2 LINE L2 -732 2582 2398 204 306 35 0 chr13 109315741 109315826 -10429072 - L2 LINE L2 -1024 2290 2203 1709 162 44 16 chr13 109316875 109317240 -10427658 - THE1C LTR MaLR 0 375 1 207 0 0 0 chr13 109318105 109318128 -10426770 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 271 233 202 85 chr13 109318295 109318518 -10426380 - MER69 DNA AcHobo -1 2525 2277 1773 293 70 59 chr13 109318568 109319566 -10425332 - MER69 DNA AcHobo -1428 1098 90 21 0 0 0 chr13 109320170 109320191 -10424707 + AT_rich Low_complexity Low_complexity 1 21 0 244 125 0 42 chr13 109320479 109320527 -10424371 - Alu SINE Alu -13 289 244 2045 104 3 34 chr13 109320834 109321132 -10423766 - AluSg SINE Alu -21 289 1 4387 39 2 0 chr13 109321158 109321698 -10423200 - L1PA3 LINE L1 -1269 4877 4337 6290 32 1 1 chr13 109321709 109322866 -10422032 + L1PA3 LINE L1 4884 6041 -114 22 35 0 0 chr13 109323936 109323965 -10420933 + AT_rich Low_complexity Low_complexity 1 29 0 2098 84 29 45 chr13 109324624 109324932 -10419966 - AluSp SINE Alu -10 303 1 849 88 0 22 chr13 109325933 109326069 -10418829 - FLAM_C SINE Alu 0 133 1 2108 100 3 7 chr13 109326518 109326808 -10418090 + AluSx SINE Alu 18 306 -6 21 89 0 0 chr13 109327043 109327099 -10417799 + AT_rich Low_complexity Low_complexity 1 56 0 937 149 63 11 chr13 109327344 109327519 -10417379 - MER101 LTR ERV1 -290 184 1 8731 205 11 22 chr13 109328098 109328937 -10415961 - L1PA16 LINE L1 -4 6162 5316 1870 83 79 11 chr13 109328937 109329085 -10415813 - L1PA10 LINE L1 -9 6159 6023 183 42 0 0 chr13 109329085 109329109 -10415789 + (TCCCC)n Simple_repeat Simple_repeat 1 24 0 1870 83 79 11 chr13 109329109 109329238 -10415660 - L1PA10 LINE L1 -145 6023 5863 8731 205 11 22 chr13 109329238 109331555 -10413343 - L1PA16 LINE L1 -850 5316 3040 890 159 0 0 chr13 109332397 109332529 -10412369 + AluJb SINE Alu 134 265 -47 411 251 54 25 chr13 109333774 109333919 -10410979 - MLT1E LTR MaLR -460 133 16 27 0 0 0 chr13 109337919 109337946 -10406952 + AT_rich Low_complexity Low_complexity 1 27 0 24 77 0 0 chr13 109338467 109338519 -10406379 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr13 109338793 109338816 -10406082 + AT_rich Low_complexity Low_complexity 1 23 0 309 276 205 19 chr13 109339327 109339483 -10405415 - MIR SINE MIR -30 232 48 217 327 140 19 chr13 109339564 109339671 -10405227 + MIR SINE MIR 16 135 -127 252 209 93 23 chr13 109341320 109341406 -10403492 + L1P LINE L1 4924 5015 -1131 24 0 0 0 chr13 109341408 109341432 -10403466 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 109342077 109342106 -10402792 + AT_rich Low_complexity Low_complexity 1 29 0 583 301 44 6 chr13 109342255 109342438 -10402460 + L2 LINE L2 2639 2828 -486 391 200 44 6 chr13 109342537 109342697 -10402201 + (TA)n Simple_repeat Simple_repeat 2 167 0 1356 232 92 12 chr13 109342801 109343128 -10401770 + MER68 LTR ERV1 185 537 -25 337 249 134 61 chr13 109344598 109344911 -10399987 + L1M4b LINE L1 1314 1791 -5156 4148 102 41 3 chr13 109345075 109345774 -10399124 - L1PA10 LINE L1 -91 6077 5345 432 175 0 0 chr13 109345844 109345941 -10398957 + (TG)n Simple_repeat Simple_repeat 2 98 0 420 20 0 0 chr13 109346025 109346074 -10398824 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 570 29 0 0 chr13 109350698 109350766 -10394132 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 294 29 0 0 chr13 109350782 109350817 -10394081 + (TG)n Simple_repeat Simple_repeat 2 36 0 613 175 97 26 chr13 109351049 109351088 -10393810 - L1MD2 LINE L1 -180 6179 6144 201 39 0 0 chr13 109351088 109351114 -10393784 + (TG)n Simple_repeat Simple_repeat 1 26 0 613 175 97 26 chr13 109351114 109351228 -10393670 - L1MD2 LINE L1 -215 6144 6015 1834 75 0 0 chr13 109351506 109351732 -10393166 - AluY SINE Alu -23 288 63 409 314 86 0 chr13 109351967 109352142 -10392756 - MIR3 SINE MIR 0 208 19 311 83 0 0 chr13 109352879 109352927 -10391971 - AluSc SINE Alu -2 297 250 222 217 29 14 chr13 109353075 109353144 -10391754 + (TA)n Simple_repeat Simple_repeat 1 70 0 403 167 33 8 chr13 109353167 109353287 -10391611 + (TA)n Simple_repeat Simple_repeat 2 124 0 291 204 19 0 chr13 109353468 109353522 -10391376 + L2 LINE L2 3259 3313 0 21 0 0 0 chr13 109354286 109354307 -10390591 + AT_rich Low_complexity Low_complexity 1 21 0 27 100 0 0 chr13 109355645 109355735 -10389163 + AT_rich Low_complexity Low_complexity 1 90 0 30 45 0 0 chr13 109355988 109356032 -10388866 + AT_rich Low_complexity Low_complexity 1 44 0 288 53 0 0 chr13 109357764 109357802 -10387096 + (TG)n Simple_repeat Simple_repeat 1 38 0 33 66 0 0 chr13 109358100 109358161 -10386737 + AT_rich Low_complexity Low_complexity 1 61 0 1521 129 129 8 chr13 109359376 109359639 -10385259 + AluSg1 SINE Alu 1 295 -14 22 0 0 0 chr13 109361780 109361802 -10383096 + AT_rich Low_complexity Low_complexity 1 22 0 274 340 88 15 chr13 109361832 109362161 -10382737 - L1MEc LINE L1 -4646 1750 1398 407 320 39 64 chr13 109362561 109362949 -10381949 - L1MEc LINE L1 -5297 908 531 965 291 191 29 chr13 109363086 109363752 -10381146 - L2 LINE L2 -1285 2029 1256 24 53 0 0 chr13 109364088 109364126 -10380772 + AT_rich Low_complexity Low_complexity 1 38 0 185 143 48 0 chr13 109366194 109366236 -10378662 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 2417 137 3 3 chr13 109366251 109366615 -10378283 - THE1B LTR MaLR 0 364 1 2628 16 0 13 chr13 109368253 109368561 -10376337 + AluY SINE Alu 1 304 -7 1790 139 10 23 chr13 109368649 109368950 -10375948 + AluSx SINE Alu 1 297 -15 224 211 44 22 chr13 109369373 109369463 -10375435 + (TA)n Simple_repeat Simple_repeat 1 92 0 2122 126 0 0 chr13 109369844 109370137 -10374761 + AluSg SINE Alu 1 293 -17 313 294 69 0 chr13 109370301 109370403 -10374495 - MIR3 SINE MIR -37 171 63 996 229 34 19 chr13 109370861 109371127 -10373771 + Charlie4 DNA MER1_type 8 277 -1684 423 234 103 0 chr13 109371140 109371247 -10373651 + Charlie4 DNA MER1_type 1841 1958 -3 330 171 29 0 chr13 109372405 109372475 -10372423 + L1MB2 LINE L1 6099 6170 -1 942 293 107 33 chr13 109373154 109373704 -10371194 - MLT1G1 LTR MaLR -4 591 1 204 227 0 0 chr13 109375325 109375369 -10369529 + GA-rich Low_complexity Low_complexity 2 45 0 4938 200 70 55 chr13 109375474 109376380 -10368518 + Charlie1a DNA MER1_type 7 943 -1818 1595 186 7 10 chr13 109376380 109376676 -10368222 + AluJo SINE Alu 5 299 -13 4938 200 70 55 chr13 109376676 109377185 -10367713 + Charlie1a DNA MER1_type 943 1443 -12 2099 161 75 5 chr13 109377238 109377636 -10367262 + MSTB LTR MaLR 1 426 0 864 308 54 25 chr13 109377806 109378251 -10366647 + LTR40c LTR ERVL 2 459 -6 1353 170 67 0 chr13 109378262 109378435 -10366463 - AluJo SINE Alu -4 308 111 234 0 0 0 chr13 109378435 109378461 -10366437 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1353 170 67 0 chr13 109378461 109378540 -10366358 - AluJo SINE Alu -201 111 39 219 69 0 0 chr13 109379472 109379501 -10365397 + (CA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 109379548 109379578 -10365320 + AT_rich Low_complexity Low_complexity 1 30 0 202 189 0 0 chr13 109380792 109380829 -10364069 + (CA)n Simple_repeat Simple_repeat 2 38 0 510 320 101 32 chr13 109381094 109381532 -10363366 - L1MC/D LINE L1 -2082 5726 5259 565 237 141 110 chr13 109382152 109382515 -10362383 + MLT1A2 LTR MaLR 1 374 0 2090 113 0 0 chr13 109382583 109382901 -10361997 + AluSq SINE Alu 3 320 0 2239 112 0 0 chr13 109383057 109383361 -10361537 - AluSq SINE Alu -9 304 1 460 298 16 0 chr13 109384308 109384496 -10360402 - Charlie2a DNA MER1_type -1201 1661 1471 326 225 56 0 chr13 109384596 109384667 -10360231 + MLT1J1 LTR MaLR 253 327 -119 24 0 0 0 chr13 109385060 109385084 -10359814 + AT_rich Low_complexity Low_complexity 1 24 0 36 0 0 0 chr13 109385541 109385577 -10359321 + AT_rich Low_complexity Low_complexity 1 36 0 28 61 0 0 chr13 109385653 109385702 -10359196 + AT_rich Low_complexity Low_complexity 1 49 0 2411 163 89 70 chr13 109385917 109386355 -10358543 + L1MC2 LINE L1 5186 5644 -700 1778 138 54 43 chr13 109386355 109386724 -10358174 - THE1C LTR MaLR -2 373 1 2411 163 89 70 chr13 109386724 109387044 -10357854 + L1MC2 LINE L1 5644 5956 -388 239 359 55 34 chr13 109387271 109387597 -10357301 - L1ME LINE L1 -5441 629 297 24 32 0 0 chr13 109388421 109388452 -10356446 + AT_rich Low_complexity Low_complexity 1 31 0 367 250 114 68 chr13 109388513 109388837 -10356061 - L1M4 LINE L1 -1778 4368 4030 346 343 28 13 chr13 109389606 109389800 -10355098 + L1ME3A LINE L1 5725 5888 -276 444 157 0 0 chr13 109389849 109389919 -10354979 + MLT2B3 LTR ERVL 1 70 -484 1703 223 95 42 chr13 109390040 109390450 -10354448 + MLT2B3 LTR ERVL 76 514 -40 513 44 0 0 chr13 109390450 109390518 -10354380 + (CA)n Simple_repeat Simple_repeat 2 69 0 1703 223 95 42 chr13 109390518 109390561 -10354337 + MLT2B3 LTR ERVL 514 553 -1 23 0 0 0 chr13 109390741 109390764 -10354134 + AT_rich Low_complexity Low_complexity 1 23 0 1890 115 49 0 chr13 109391141 109391427 -10353471 + AluSx SINE Alu 1 300 -12 810 214 106 91 chr13 109392263 109392604 -10352294 + MLT1A2 LTR MaLR 7 352 -22 462 325 30 15 chr13 109392670 109392867 -10352031 - MIR SINE MIR -60 202 3 291 28 0 0 chr13 109393351 109393387 -10351511 + (TG)n Simple_repeat Simple_repeat 2 37 0 243 88 0 0 chr13 109394886 109394920 -10349978 + (T)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr13 109395515 109395545 -10349353 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr13 109395838 109395862 -10349036 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr13 109396010 109396052 -10348846 + AT_rich Low_complexity Low_complexity 1 42 0 555 209 104 0 chr13 109396318 109396433 -10348465 + FLAM_A SINE Alu 3 129 -4 27 0 0 0 chr13 109396442 109396469 -10348429 + AT_rich Low_complexity Low_complexity 1 27 0 960 160 16 147 chr13 109397949 109398255 -10346643 + L1MD3 LINE L1 7730 7995 0 598 204 7 29 chr13 109398429 109398566 -10346332 - FLAM_C SINE Alu -9 134 1 933 218 102 3 chr13 109400432 109400857 -10344041 - MLT1D LTR MaLR -5 500 1 511 213 43 21 chr13 109401290 109401503 -10343395 - L1ME LINE L1 -652 5514 5296 325 318 45 56 chr13 109401982 109402161 -10342737 - L1MEd LINE L1 -5710 409 233 266 281 0 0 chr13 109402182 109402246 -10342652 + (CA)n Simple_repeat Simple_repeat 1 64 0 208 246 33 0 chr13 109403239 109403300 -10341598 + GA-rich Low_complexity Low_complexity 2 64 0 22 35 0 0 chr13 109406353 109406382 -10338516 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 109408123 109408168 -10336730 + AT_rich Low_complexity Low_complexity 1 45 0 389 115 46 0 chr13 109408756 109408843 -10336055 + (TA)n Simple_repeat Simple_repeat 1 91 0 302 252 20 93 chr13 109408849 109409000 -10335898 - L1MC4 LINE L1 -1339 6703 6564 318 383 0 7 chr13 109409654 109409795 -10335103 - L3b LINE CR1 -325 1258 1119 1264 182 4 40 chr13 109410295 109410548 -10334350 - AluJo SINE Alu -15 297 54 2023 119 0 4 chr13 109410874 109411151 -10333747 + AluSx SINE Alu 6 281 -31 183 42 0 0 chr13 109411152 109411176 -10333722 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1955 132 0 17 chr13 109411228 109411539 -10333359 - AluSx SINE Alu 0 306 1 715 269 23 31 chr13 109412103 109412360 -10332538 - LTR16C LTR ERVL 0 491 237 827 313 59 70 chr13 109412822 109413518 -10331380 - HERV16 LTR ERVL -2374 2622 1935 274 338 62 23 chr13 109413628 109413936 -10330962 - HERV16 LTR ERVL -3860 1794 1475 2424 40 0 59 chr13 109414200 109414523 -10330375 + AluY SINE Alu 1 304 -7 1108 171 154 26 chr13 109414637 109414911 -10329987 + MLT1A1 LTR MaLR 6 318 -47 485 338 17 21 chr13 109415236 109415473 -10329425 - HERV16 LTR ERVL -4358 638 403 1187 317 55 7 chr13 109415813 109416267 -10328631 - LTR16C LTR ERVL 0 491 16 230 73 24 0 chr13 109416863 109416904 -10327994 + (CA)n Simple_repeat Simple_repeat 2 43 0 216 290 0 9 chr13 109417081 109417188 -10327710 + (TA)n Simple_repeat Simple_repeat 1 106 0 854 246 30 30 chr13 109418384 109418587 -10326311 + MER20 DNA MER1_type 2 204 -15 390 310 7 28 chr13 109418676 109418821 -10326077 - MLT1J2 LTR MaLR -36 414 273 180 0 0 0 chr13 109418821 109418841 -10326057 + (T)n Simple_repeat Simple_repeat 1 20 0 418 307 58 34 chr13 109420480 109420685 -10324213 - MIR SINE MIR 0 262 53 348 355 5 26 chr13 109421223 109421412 -10323486 + L1MCc LINE L1 254 438 -5985 595 301 99 6 chr13 109421680 109422022 -10322876 + L1MCc LINE L1 1144 1517 -4906 194 219 49 0 chr13 109422036 109422077 -10322821 + L2 LINE L2 3261 3303 -10 2768 118 3 3 chr13 109422157 109422548 -10322350 - MER1A DNA MER1_type 0 529 139 225 85 34 34 chr13 109422710 109422769 -10322129 + T-rich Low_complexity Low_complexity 5 63 0 23 33 0 0 chr13 109422917 109422947 -10321951 + AT_rich Low_complexity Low_complexity 1 30 0 2784 90 0 11 chr13 109423271 109423650 -10321248 - THE1C LTR MaLR 0 375 1 192 182 0 0 chr13 109423760 109423804 -10321094 + (TG)n Simple_repeat Simple_repeat 1 44 0 357 333 13 19 chr13 109423917 109424073 -10320825 + MIR SINE MIR 3 157 -105 227 336 56 16 chr13 109424640 109424765 -10320133 - MIR3 SINE MIR -5 203 74 1791 200 23 28 chr13 109427761 109427884 -10317014 - MLT1B LTR MaLR 0 390 268 2498 40 3 0 chr13 109427884 109427896 -10317002 - AluY SINE Alu -14 297 287 207 0 0 0 chr13 109427896 109427919 -10316979 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2498 40 3 0 chr13 109427919 109428202 -10316696 - AluY SINE Alu -24 287 1 1791 200 23 28 chr13 109428202 109428468 -10316430 - MLT1B LTR MaLR -122 268 3 462 291 119 61 chr13 109428572 109428967 -10315931 - MLT1J2 LTR MaLR -4 446 29 186 308 137 43 chr13 109429167 109429284 -10315614 + MIR SINE MIR 3 130 -132 30 0 0 0 chr13 109430957 109430987 -10313911 + AT_rich Low_complexity Low_complexity 1 30 0 275 343 131 7 chr13 109431292 109431429 -10313469 - L2 LINE L2 0 3313 3160 210 71 0 0 chr13 109431631 109431659 -10313239 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1153 314 155 50 chr13 109431965 109433556 -10311342 + L2 LINE L2 1545 3310 -3 710 329 25 8 chr13 109435597 109435840 -10309058 - MIR SINE MIR 0 262 16 21 82 0 0 chr13 109435911 109435960 -10308938 + AT_rich Low_complexity Low_complexity 1 49 0 310 213 73 104 chr13 109436481 109436645 -10308253 - L1ME LINE L1 -651 5513 5355 768 326 79 9 chr13 109436692 109437112 -10307786 - L2 LINE L2 -1001 2313 1865 2347 156 25 31 chr13 109437159 109437959 -10306939 - L1MA9 LINE L1 -1 6311 5452 16874 97 7 2 chr13 109438098 109441333 -10303565 - L1PA7 LINE L1 -1 6153 2902 699 275 105 26 chr13 109441335 109441640 -10303258 - L2 LINE L2 -1583 1731 1403 1772 154 52 28 chr13 109442086 109442449 -10302449 + THE1C LTR MaLR 1 372 -3 29 78 0 0 chr13 109442490 109442554 -10302344 + AT_rich Low_complexity Low_complexity 1 64 0 299 227 10 0 chr13 109443159 109443256 -10301642 + CT-rich Low_complexity Low_complexity 3 100 0 1744 156 15 0 chr13 109443258 109443527 -10301371 - AluSx SINE Alu -39 273 1 974 78 0 0 chr13 109444990 109445118 -10299780 + L1PA14 LINE L1 6030 6157 -4 3077 111 112 56 chr13 109445822 109446374 -10298524 + LTR12 LTR ERV1 1 583 -131 570 230 88 40 chr13 109446448 109446674 -10298224 - LTR16A1 LTR ERVL -2 455 219 254 288 14 13 chr13 109446862 109447088 -10297810 + (CA)n Simple_repeat Simple_repeat 1 226 0 204 277 46 0 chr13 109447214 109447279 -10297619 + MIR SINE MIR 195 262 0 282 203 0 89 chr13 109448414 109448493 -10296405 + L2 LINE L2 3201 3272 0 33338 38 1 1 chr13 109448557 109454716 -10290182 - L1PA3 LINE L1 0 6155 2 2473 113 8 3 chr13 109458317 109458679 -10286219 - THE1B LTR MaLR 0 364 1 1648 203 69 14 chr13 109458701 109459065 -10285833 - MLT1B LTR MaLR 0 390 7 306 364 107 0 chr13 109459548 109459688 -10285210 + L2 LINE L2 3117 3271 -1 840 154 4 19 chr13 109460494 109460762 -10284136 + (CATCC)n Simple_repeat Simple_repeat 1 264 0 611 211 12 4 chr13 109460804 109461055 -10283843 + (CATCC)n Simple_repeat Simple_repeat 1 252 0 600 279 32 48 chr13 109462148 109462399 -10282499 + L1MCb LINE L1 314 560 -5485 1680 196 85 23 chr13 109462593 109463107 -10281791 - MLT2A2 LTR ERVL 0 554 1 351 127 0 0 chr13 109463225 109463288 -10281610 + (GA)n Simple_repeat Simple_repeat 2 64 0 331 285 88 22 chr13 109463672 109463809 -10281089 - MIR SINE MIR -94 168 23 2592 55 0 0 chr13 109464510 109464820 -10280078 + AluY SINE Alu 2 311 0 26 30 0 0 chr13 109464946 109464979 -10279919 + AT_rich Low_complexity Low_complexity 1 33 0 264 59 0 0 chr13 109466869 109466903 -10277995 + (TC)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr13 109466917 109466946 -10277952 + (CA)n Simple_repeat Simple_repeat 2 30 0 471 108 0 0 chr13 109466952 109467026 -10277872 - L1MA3 LINE L1 0 6305 6232 19090 184 30 14 chr13 109467029 109472368 -10272530 - L1 LINE L1 -2125 5440 12 183 336 37 19 chr13 109472982 109473089 -10271809 + MIR3 SINE MIR 82 190 -18 301 312 196 20 chr13 109473410 109473609 -10271289 + MLT1I LTR MaLR 59 292 -117 470 195 9 53 chr13 109475735 109475848 -10269050 - L2 LINE L2 0 3313 3206 206 341 82 35 chr13 109475976 109476061 -10268837 - L2 LINE L2 -38 3234 3146 2352 173 7 31 chr13 109476332 109476788 -10268110 + MER65A LTR ERV1 1 445 0 229 350 11 43 chr13 109477103 109477289 -10267609 - L2 LINE L2 -557 2757 2578 21 82 0 0 chr13 109477633 109477682 -10267216 + AT_rich Low_complexity Low_complexity 1 49 0 2161 193 63 20 chr13 109477833 109478326 -10266572 + MER67D LTR ERV1 1 514 0 182 241 93 0 chr13 109481679 109481733 -10263165 - MIR SINE MIR -110 152 94 360 278 95 0 chr13 109482208 109482334 -10262564 + MIR SINE MIR 63 200 -62 465 115 26 0 chr13 109482645 109482723 -10262175 + AluS SINE Alu 1 80 -233 238 320 136 0 chr13 109482726 109482829 -10262069 + LTR16A1 LTR ERVL 341 457 0 201 328 0 0 chr13 109482830 109482894 -10262004 + MIR SINE MIR 199 262 0 1987 158 3 6 chr13 109482907 109483269 -10261629 - MER46B DNA MER2_type 0 236 1 1787 249 92 80 chr13 109484462 109485979 -10258919 - L1MEc LINE L1 -3998 2398 863 * 5044 167 35 23 chr13 109485975 109486505 -10258393 - L1MA7 LINE L1 0 6291 5769 2092 138 24 12 chr13 109486505 109486838 -10258060 + MER1B DNA MER1_type 1 337 0 5044 167 35 23 chr13 109486838 109487355 -10257543 - L1MA7 LINE L1 -522 5769 5208 2005 288 37 4 chr13 109487349 109488044 -10256854 - L1MEc LINE L1 -5506 890 173 * 911 264 20 28 chr13 109488045 109488299 -10256599 - MLT1E2 LTR MaLR 0 626 375 261 297 186 14 chr13 109488486 109488631 -10256267 - MLT1E3 LTR MaLR -454 170 1 318 304 30 22 chr13 109488632 109488767 -10256131 - L1MEc LINE L1 -6221 175 40 451 0 0 0 chr13 109490185 109490234 -10254664 + pTR5 LTR ERV1 2390 2438 0 323 271 90 30 chr13 109491705 109491838 -10253060 + MIR3 SINE MIR 63 203 -5 888 246 24 14 chr13 109492895 109493106 -10251792 - MER58A DNA MER1_type 0 224 12 1523 180 28 3 chr13 109493841 109494130 -10250768 - AluJo SINE Alu -16 296 1 237 292 15 0 chr13 109494359 109494424 -10250474 - MER2 DNA MER2_type 0 345 280 1202 156 9 14 chr13 109494464 109494675 -10250223 - MER2 DNA MER2_type -135 210 1 22 0 0 0 chr13 109495429 109495451 -10249447 + AT_rich Low_complexity Low_complexity 1 22 0 2142 66 0 0 chr13 109495453 109495711 -10249187 + AluY SINE Alu 54 311 0 304 340 62 42 chr13 109495913 109496172 -10248726 - L1M4 LINE L1 -2245 3901 3638 305 274 243 50 chr13 109496173 109496490 -10248408 + L2 LINE L2 1920 2297 -1017 1802 115 79 12 chr13 109496527 109496912 -10247986 + MER9 LTR ERVK 34 511 0 1955 109 18 7 chr13 109497461 109497735 -10247163 - AluSx SINE Alu -16 296 20 919 241 90 83 chr13 109497764 109498221 -10246677 - LTR40a LTR ERVL -2 460 1 21 71 0 0 chr13 109498387 109498429 -10246469 + AT_rich Low_complexity Low_complexity 1 42 0 2174 101 9 35 chr13 109498452 109498768 -10246130 - AluSg SINE Alu -2 308 1 21 36 0 0 chr13 109499055 109499083 -10245815 + AT_rich Low_complexity Low_complexity 1 28 0 207 194 0 0 chr13 109499991 109500027 -10244871 + (CA)n Simple_repeat Simple_repeat 1 36 0 4085 72 28 0 chr13 109500113 109500652 -10244246 - MER41A LTR ERV1 0 554 1 1949 111 0 7 chr13 109500914 109501185 -10243713 - AluSq SINE Alu 0 313 45 247 254 52 52 chr13 109501220 109501393 -10243505 - L1M4 LINE L1 -1899 4247 4075 31 58 0 0 chr13 109501718 109501770 -10243128 + AT_rich Low_complexity Low_complexity 1 52 0 500 340 206 2 chr13 109501810 109502072 -10242826 + L2 LINE L2 1922 2129 -1185 540 0 0 0 chr13 109502072 109502132 -10242766 + (TA)n Simple_repeat Simple_repeat 2 61 0 500 340 206 2 chr13 109502132 109502292 -10242606 + L2 LINE L2 2129 2430 -884 691 183 35 0 chr13 109502343 109502485 -10242413 - L1MA10 LINE L1 -11 6323 6177 219 88 0 0 chr13 109502489 109502523 -10242375 + (TG)n Simple_repeat Simple_repeat 2 35 0 614 298 139 26 chr13 109502534 109502980 -10241918 + L2 LINE L2 2742 3222 -91 25 31 0 0 chr13 109503047 109503079 -10241819 + AT_rich Low_complexity Low_complexity 1 32 0 389 272 41 31 chr13 109503569 109503764 -10241134 + LTR16C LTR ERVL 288 484 -7 1057 259 85 39 chr13 109504657 109504894 -10240004 + MER74B LTR ERVL 73 298 -324 1209 133 95 0 chr13 109504894 109505104 -10239794 + MER30 DNA MER1_type 1 230 0 1057 259 85 39 chr13 109505104 109505303 -10239595 + MER74B LTR ERVL 298 529 -93 305 308 107 12 chr13 109505162 109505331 -10239567 - MER88 LTR ERVL -198 266 82 * 22 70 0 0 chr13 109505571 109505614 -10239284 + AT_rich Low_complexity Low_complexity 1 43 0 530 206 9 0 chr13 109505618 109505725 -10239173 + FLAM_C SINE Alu 4 111 -32 6275 113 33 12 chr13 109505932 109506884 -10238014 - L1MA2 LINE L1 0 6304 5327 2129 92 7 3 chr13 109506884 109507179 -10237719 - AluY SINE Alu -15 296 1 6275 113 33 12 chr13 109507179 109507276 -10237622 - L1MA2 LINE L1 -977 5327 5233 21 0 0 0 chr13 109507339 109507360 -10237538 + AT_rich Low_complexity Low_complexity 1 21 0 2256 105 0 0 chr13 109508546 109508840 -10236058 - AluSx SINE Alu -17 295 2 2259 174 52 7 chr13 109508913 109509373 -10235525 + MER31A LTR ERV1 1 481 -4 2393 107 34 11 chr13 109509389 109509745 -10235153 + THE1B LTR MaLR 1 364 0 2669 161 48 18 chr13 109510480 109511038 -10233860 + L1MA8 LINE L1 5714 6288 -3 726 134 0 60 chr13 109512157 109512291 -10232607 - FLAM_C SINE Alu -7 126 1 186 282 233 10 chr13 109512528 109512631 -10232267 - L2 LINE L2 -2 3270 3145 355 314 52 23 chr13 109512758 109512930 -10231968 + MIR SINE MIR 36 212 -50 243 241 0 0 chr13 109513025 109513083 -10231815 - L2 LINE L2 -6 3266 3209 235 280 104 50 chr13 109514810 109514992 -10229906 + L1MC4a LINE L1 3639 3830 -2316 2171 221 49 53 chr13 109515322 109515802 -10229096 + L1MD1 LINE L1 1216 1693 -4847 2271 108 0 6 chr13 109515802 109516116 -10228782 - AluSx SINE Alu 0 312 1 2171 221 49 53 chr13 109516116 109516394 -10228504 + L1MD1 LINE L1 1693 1971 -4569 4034 206 102 12 chr13 109516399 109517832 -10227066 + L1MD1 LINE L1 5030 6618 -18 306 296 46 0 chr13 109518080 109518188 -10226710 + L1MC4a LINE L1 4498 4610 -1536 306 67 0 0 chr13 109518313 109518358 -10226540 + (TG)n Simple_repeat Simple_repeat 1 45 0 260 264 47 38 chr13 109519090 109519196 -10225702 - MLT1H LTR MaLR -372 177 71 515 286 103 75 chr13 109519345 109519944 -10224954 + L1MC4a LINE L1 5315 5930 -1878 378 250 194 8 chr13 109520920 109521044 -10223854 + MIR SINE MIR 79 225 -37 290 143 16 0 chr13 109521253 109521316 -10223582 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 22 35 0 0 chr13 109521845 109521874 -10223024 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 109523567 109523592 -10221306 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 109524079 109524107 -10220791 + AT_rich Low_complexity Low_complexity 1 28 0 807 121 20 0 chr13 109524211 109524360 -10220538 + (TAGA)n Simple_repeat Simple_repeat 2 153 0 746 206 32 7 chr13 109528536 109528691 -10216207 - MLT1A2 LTR MaLR 0 374 216 346 287 186 17 chr13 109529026 109529263 -10215635 - L1MC/D LINE L1 -2163 5645 5369 443 302 66 75 chr13 109529487 109530033 -10214865 - L1MC/D LINE L1 -1112 5034 4494 301 237 21 10 chr13 109530112 109530209 -10214689 + (TA)n Simple_repeat Simple_repeat 1 98 0 1761 150 147 24 chr13 109530305 109530686 -10214212 + MSTA LTR MaLR 1 428 0 411 316 139 14 chr13 109530721 109530936 -10213962 - L1ME3A LINE L1 -335 5835 5594 207 358 178 12 chr13 109530964 109531285 -10213613 + L2 LINE L2 2244 2617 -697 490 213 13 0 chr13 109531426 109531581 -10213317 + (TA)n Simple_repeat Simple_repeat 1 157 0 774 209 68 34 chr13 109531597 109531626 -10213272 - HsTC2 DNA Tc2 -128 1770 1743 2154 107 3 10 chr13 109531626 109531934 -10212964 + AluSp SINE Alu 1 306 -7 774 209 68 34 chr13 109531934 109532139 -10212759 - HsTC2 DNA Tc2 -155 1743 1528 1738 266 90 5 chr13 109532140 109532749 -10212149 - HsTC2 DNA Tc2 -1237 661 1 22 0 0 0 chr13 109532750 109532772 -10212126 + AT_rich Low_complexity Low_complexity 1 22 0 2276 61 3 3 chr13 109533262 109533559 -10211339 + AluY SINE Alu 1 297 -14 1735 182 14 0 chr13 109534091 109534387 -10210511 + AluJo SINE Alu 6 305 -7 596 231 8 0 chr13 109534732 109534862 -10210036 - L1MB7 LINE L1 -15 6169 6039 2601 193 88 23 chr13 109534897 109535276 -10209622 - L1MB7 LINE L1 -201 5983 5547 2096 93 0 55 chr13 109535276 109535588 -10209310 - AluSg SINE Alu -13 297 3 2601 193 88 23 chr13 109535588 109535819 -10209079 - L1MB7 LINE L1 -637 5547 5333 756 247 78 46 chr13 109535912 109536349 -10208549 + L1MC5 LINE L1 7067 7517 -444 2776 239 51 31 chr13 109536592 109536901 -10207997 - MLT1A1-int LTR MaLR -458 1277 976 1783 128 0 4 chr13 109536901 109537151 -10207747 - AluSq SINE Alu -42 271 23 2776 239 51 31 chr13 109537151 109537758 -10207140 - MLT1A1-int LTR MaLR -759 976 2 1063 194 38 105 chr13 109537759 109538150 -10206748 - MLT1A1 LTR MaLR 0 365 1 243 152 0 0 chr13 109538933 109538979 -10205919 + GA-rich Low_complexity Low_complexity 2 47 0 2358 61 0 7 chr13 109539227 109539524 -10205374 + AluY SINE Alu 1 295 -16 523 310 125 21 chr13 109539780 109540203 -10204695 - L1ME3 LINE L1 -311 5851 5385 22 0 0 0 chr13 109540525 109540547 -10204351 + AT_rich Low_complexity Low_complexity 1 22 0 738 191 15 0 chr13 109540584 109540715 -10204183 - FLAM_C SINE Alu 0 133 1 333 272 56 32 chr13 109541105 109541230 -10203668 - L2 LINE L2 -4 3309 3182 222 204 0 0 chr13 109541237 109541286 -10203612 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr13 109541496 109541518 -10203380 + AT_rich Low_complexity Low_complexity 1 22 0 1778 117 4 0 chr13 109542913 109543181 -10201717 + AluSp SINE Alu 35 303 0 269 270 16 0 chr13 109543716 109543779 -10201119 + MIR3 SINE MIR 108 171 -37 304 164 0 0 chr13 109543792 109543847 -10201051 - MADE1 DNA Mariner -1 79 25 23 0 0 0 chr13 109544002 109544025 -10200873 + AT_rich Low_complexity Low_complexity 1 23 0 206 363 56 25 chr13 109545534 109545677 -10199221 - MIR3 SINE MIR -78 130 10 212 308 0 0 chr13 109546171 109546236 -10198662 + (ATG)n Simple_repeat Simple_repeat 2 66 0 271 304 72 14 chr13 109546315 109546453 -10198445 - MIR SINE MIR -97 165 20 1190 40 51 29 chr13 109547371 109547546 -10197352 + L1PA4 LINE L1 5977 6155 0 306 260 22 28 chr13 109549555 109549736 -10195162 + (TA)n Simple_repeat Simple_repeat 1 180 0 1323 195 109 0 chr13 109549832 109550134 -10194764 + MER44D DNA MER2_type 3 607 -2 282 257 69 42 chr13 109550350 109550494 -10194404 + L1ME LINE L1 5677 5824 -297 987 159 105 4 chr13 109551239 109551564 -10193334 - MSTA LTR MaLR -35 391 1 448 331 18 6 chr13 109551649 109551818 -10193080 + MIR SINE MIR 75 245 -17 232 0 0 0 chr13 109552703 109552729 -10192169 - L1P3 LINE L1 -5482 979 954 6546 84 10 3 chr13 109552731 109554278 -10190620 + L1PA8 LINE L1 4610 6163 -9 321 271 10 10 chr13 109555654 109555750 -10189148 + LTR16C LTR ERVL 392 487 -4 1882 153 3 3 chr13 109557915 109558209 -10186689 - AluSx SINE Alu -18 294 1 3289 193 47 3 chr13 109558594 109559354 -10185544 + L1MA9 LINE L1 4322 5115 -1031 2177 181 30 34 chr13 109559365 109559872 -10185026 + L1MA9 LINE L1 5808 6312 0 27 29 0 0 chr13 109560094 109560128 -10184770 + AT_rich Low_complexity Low_complexity 1 34 0 215 299 156 0 chr13 109560189 109560266 -10184632 - L2 LINE L2 -5 3267 3179 417 261 23 96 chr13 109560286 109560514 -10184384 + MIR SINE MIR 19 219 -43 303 49 0 0 chr13 109560710 109560751 -10184147 + (GA)n Simple_repeat Simple_repeat 2 42 0 7174 172 19 0 chr13 109560997 109563172 -10181726 + L1PA13 LINE L1 3957 6154 -9 798 169 28 6 chr13 109563563 109563740 -10181158 + L1PA13 LINE L1 5685 5865 -298 1973 122 4 7 chr13 109563820 109564140 -10180758 + AluSx SINE Alu 8 326 0 2545 48 0 0 chr13 109564335 109564629 -10180269 - AluY SINE Alu -17 294 1 303 319 133 0 chr13 109564695 109564808 -10180090 - L2 LINE L2 0 3313 3186 601 268 114 26 chr13 109566156 109566384 -10178514 + MIR SINE MIR 15 262 0 21 0 0 0 chr13 109566459 109566480 -10178418 + AT_rich Low_complexity Low_complexity 1 21 0 877 270 95 23 chr13 109566723 109567156 -10177742 + LTR16B LTR ERVL 1 464 0 487 301 77 0 chr13 109567674 109567857 -10177041 + L2 LINE L2 2311 2507 -807 480 319 73 11 chr13 109567899 109567968 -10176930 + L2 LINE L2 3036 3099 -214 2166 132 3 0 chr13 109567968 109568271 -10176627 - AluSx SINE Alu -8 304 1 480 319 73 11 chr13 109568271 109568461 -10176437 + L2 LINE L2 3099 3311 -2 192 40 0 0 chr13 109569706 109569731 -10175167 + (A)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chr13 109569908 109569941 -10174957 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr13 109570137 109570160 -10174738 + AT_rich Low_complexity Low_complexity 1 23 0 883 142 0 40 chr13 109570198 109570346 -10174552 - FLAM_C SINE Alu -1 142 1 1865 204 56 17 chr13 109570491 109570903 -10173995 - MSTA LTR MaLR 0 428 1 7872 193 26 34 chr13 109570913 109572573 -10172325 - MSTA-int LTR MaLR -4 1647 1 2085 176 56 12 chr13 109572573 109572983 -10171915 - MSTA LTR MaLR 0 428 1 1865 137 13 46 chr13 109575571 109575881 -10169017 - MER46B DNA MER2_type -2495 236 62 2434 35 0 0 chr13 109575881 109576187 -10168711 - AluY SINE Alu 0 306 1 1865 137 13 46 chr13 109576187 109576248 -10168650 - MER46B DNA MER2_type -2669 62 1 193 342 53 8 chr13 109577193 109577236 -10167662 - MIR3 SINE MIR -1 207 167 1909 229 33 4 chr13 109577236 109577686 -10167212 - MLT1C LTR MaLR -4 463 1 193 342 53 8 chr13 109577686 109577772 -10167126 - MIR3 SINE MIR -41 167 68 251 203 14 0 chr13 109578089 109578158 -10166740 + CT-rich Low_complexity Low_complexity 3 72 0 22 0 0 0 chr13 109579432 109579454 -10165444 + AT_rich Low_complexity Low_complexity 1 22 0 234 246 118 45 chr13 109579637 109579747 -10165151 + L2 LINE L2 3151 3268 -4 777 107 38 0 chr13 109579855 109579986 -10164912 - L1PA13 LINE L1 -5 6158 6023 1874 162 7 7 chr13 109580136 109580438 -10164460 - AluSq SINE Alu -11 302 1 792 308 83 40 chr13 109580438 109581007 -10163891 + MLT1E LTR MaLR 1 593 0 21 71 0 0 chr13 109581746 109581788 -10163110 + AT_rich Low_complexity Low_complexity 1 42 0 200 225 50 75 chr13 109583410 109583490 -10161408 + MIR3 SINE MIR 90 167 -41 2276 102 0 0 chr13 109584043 109584350 -10160548 + AluSx SINE Alu 1 307 0 280 200 0 106 chr13 109584433 109584518 -10160380 + MER103 DNA DNA 2 77 -89 8150 37 1 1 chr13 109585734 109586785 -10158113 - L1P LINE L1 -3594 2552 1502 576 140 0 11 chr13 109587061 109587154 -10157744 - L1PA10 LINE L1 -11 6157 6066 1649 60 0 0 chr13 109587154 109587372 -10157526 - L1PA8A LINE L1 -109 6022 5805 2483 88 22 0 chr13 109587809 109588174 -10156724 - Tigger1 DNA MER2_type -435 1983 1611 590 116 11 0 chr13 109588284 109588379 -10156519 - Charlie3 DNA MER1_type -2614 96 1 21 57 0 0 chr13 109588702 109588737 -10156161 + AT_rich Low_complexity Low_complexity 1 35 0 3793 187 40 29 chr13 109589921 109590818 -10154080 + L1MC3 LINE L1 6685 7591 -194 2046 98 49 3 chr13 109590818 109591103 -10153795 + AluSg SINE Alu 1 298 -12 956 80 109 0 chr13 109591478 109591615 -10153283 - THE1B LTR MaLR -212 152 1 1860 149 0 13 chr13 109591764 109592066 -10152832 - AluSx SINE Alu -14 298 1 219 205 0 0 chr13 109592087 109592126 -10152772 - L2 LINE L2 -17 3255 3217 366 331 133 11 chr13 109592632 109592813 -10152085 + MIR SINE MIR 60 262 0 878 333 43 48 chr13 109592951 109593393 -10151505 + L2 LINE L2 2825 3264 -8 1985 159 0 3 chr13 109593465 109593766 -10151132 - AluJb SINE Alu -12 300 1 202 171 102 87 chr13 109594478 109594547 -10150351 - MIR SINE MIR -39 169 103 377 348 80 0 chr13 109595193 109595331 -10149567 + L2 LINE L2 3123 3271 -1 469 235 28 16 chr13 109595668 109595925 -10148973 + GA-rich Low_complexity Low_complexity 1 260 0 298 347 30 30 chr13 109596645 109596907 -10147991 - L2 LINE L2 -685 2629 2368 370 196 8 113 chr13 109598167 109598300 -10146598 + MLT1D LTR MaLR 9 127 -378 244 191 0 0 chr13 109598299 109598346 -10146552 + MLT1D LTR MaLR 449 495 -10 * 494 254 22 111 chr13 109598382 109598670 -10146228 + MIR SINE MIR 1 261 -1 1044 139 58 0 chr13 109598705 109598913 -10145985 - L1MA2 LINE L1 -106 6198 5979 2223 231 79 25 chr13 109598918 109599002 -10145896 - L1M1 LINE L1 -4444 1884 1806 357 24 0 0 chr13 109599002 109599044 -10145854 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2223 231 79 25 chr13 109599044 109599199 -10145699 - L1M1 LINE L1 -4522 1806 1661 576 42 0 0 chr13 109599199 109599270 -10145628 + (TA)n Simple_repeat Simple_repeat 2 72 0 2223 231 79 25 chr13 109599270 109599867 -10145031 - L1M1 LINE L1 -4667 1661 1002 659 167 0 0 chr13 109599878 109600010 -10144888 - L1M1 LINE L1 -4462 866 735 357 273 11 0 chr13 109600011 109600099 -10144799 - L1M1 LINE L1 -4627 701 613 346 111 0 0 chr13 109600131 109600185 -10144713 - MADE1 DNA Mariner 0 80 27 * 1590 160 136 22 chr13 109600172 109600541 -10144357 - MSTA LTR MaLR -17 411 1 2815 215 15 3 chr13 109600541 109601151 -10143747 - L1M1 LINE L1 -4711 617 1 184 216 0 27 chr13 109601758 109601832 -10143066 + GA-rich Low_complexity Low_complexity 3 74 0 561 182 0 0 chr13 109602005 109602115 -10142783 - L1MA9 LINE L1 -22 6290 6181 2380 189 31 0 chr13 109602118 109602599 -10142299 - L1MA9 LINE L1 -231 6081 5586 206 132 57 19 chr13 109603411 109603464 -10141434 + (TAATG)n Simple_repeat Simple_repeat 4 58 0 1870 197 115 36 chr13 109603762 109604437 -10140461 - MER52A LTR ERV1 -466 761 1 32 57 0 0 chr13 109604504 109604557 -10140341 + AT_rich Low_complexity Low_complexity 1 53 0 28 79 0 0 chr13 109605010 109605073 -10139825 + AT_rich Low_complexity Low_complexity 1 63 0 1695 134 34 28 chr13 109605692 109606013 -10138885 + L1MA8 LINE L1 5965 6287 -4 229 143 0 24 chr13 109606130 109606172 -10138726 + MER110A LTR ERV1 95 135 -333 561 341 85 19 chr13 109606275 109606592 -10138306 + MER110 LTR ERV1 154 491 0 25 0 0 0 chr13 109606958 109606983 -10137915 + AT_rich Low_complexity Low_complexity 1 25 0 330 399 20 20 chr13 109607790 109607988 -10136910 - MIR3 SINE MIR 0 208 11 260 299 65 28 chr13 109609357 109609464 -10135434 - L2 LINE L2 -8 3305 3195 830 131 0 0 chr13 109609812 109609942 -10134956 + L1MD1 LINE L1 6113 6242 0 327 321 228 26 chr13 109610111 109610379 -10134519 + LTR33A LTR ERVL 75 396 -127 1199 228 15 89 chr13 109610379 109610773 -10134125 + MLT1A1 LTR MaLR 1 365 0 209 349 42 37 chr13 109612981 109613170 -10131728 + L2 LINE L2 1839 2028 -1286 23 0 0 0 chr13 109613573 109613596 -10131302 + AT_rich Low_complexity Low_complexity 1 23 0 6845 66 5 6 chr13 109613771 109615480 -10129418 - L1PA7 LINE L1 -2 6152 4441 309 289 10 0 chr13 109615534 109615631 -10129267 + (TA)n Simple_repeat Simple_repeat 1 98 0 384 22 0 0 chr13 109615896 109615941 -10128957 + (TA)n Simple_repeat Simple_repeat 1 45 0 646 60 20 10 chr13 109615950 109616050 -10128848 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 2032 117 13 10 chr13 109616053 109616362 -10128536 - AluSx SINE Alu -2 310 1 321 348 68 17 chr13 109616530 109616766 -10128132 + MIR SINE MIR 15 262 0 337 196 68 6 chr13 109617036 109617199 -10127699 + (TA)n Simple_repeat Simple_repeat 2 174 0 31 44 0 0 chr13 109617252 109617297 -10127601 + AT_rich Low_complexity Low_complexity 1 45 0 377 121 0 15 chr13 109618327 109618393 -10126505 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 315 0 0 0 chr13 109618751 109618786 -10126112 + (TA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr13 109618786 109618806 -10126092 + (T)n Simple_repeat Simple_repeat 1 20 0 291 54 0 0 chr13 109619315 109619352 -10125546 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr13 109620235 109620263 -10124635 + AT_rich Low_complexity Low_complexity 1 28 0 942 194 15 48 chr13 109621186 109621392 -10123506 + MER20 DNA MER1_type 2 200 -19 1221 187 12 16 chr13 109623602 109624091 -10120807 + L1MC2 LINE L1 5702 6320 -24 614 49 12 0 chr13 109624092 109624174 -10120724 + (TA)n Simple_repeat Simple_repeat 1 83 0 2259 96 0 0 chr13 109624201 109624494 -10120404 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr13 109625029 109625057 -10119841 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 109625197 109625229 -10119669 + AT_rich Low_complexity Low_complexity 1 32 0 480 35 0 0 chr13 109625500 109625558 -10119340 + (TG)n Simple_repeat Simple_repeat 2 59 0 253 337 0 0 chr13 109625662 109625751 -10119147 + MIR SINE MIR 65 153 -109 5076 131 37 1 chr13 109626092 109626909 -10117989 + L1PA15 LINE L1 5320 6165 0 4504 154 14 7 chr13 109627793 109629020 -10115878 - L1PB4 LINE L1 0 6156 4970 30 59 0 0 chr13 109629183 109629234 -10115664 + AT_rich Low_complexity Low_complexity 1 51 0 2784 7 0 0 chr13 109629306 109629614 -10115284 + AluYa5 SINE Alu 1 308 -3 621 317 23 30 chr13 109630249 109630511 -10114387 + MLT1H LTR MaLR 60 319 -230 192 40 0 0 chr13 109630819 109630844 -10114054 + (TG)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr13 109631593 109631621 -10113277 + AT_rich Low_complexity Low_complexity 1 28 0 1234 37 0 19 chr13 109632045 109632206 -10112692 - L1PA4 LINE L1 -3 6152 5995 201 192 58 0 chr13 109632674 109632726 -10112172 + (CAATT)n Simple_repeat Simple_repeat 4 58 0 22 0 0 0 chr13 109633129 109633151 -10111747 + AT_rich Low_complexity Low_complexity 1 22 0 228 330 9 0 chr13 109633478 109633590 -10111308 + (TA)n Simple_repeat Simple_repeat 1 113 0 267 292 73 10 chr13 109634026 109634122 -10110776 - MIR SINE MIR -55 207 106 273 276 90 32 chr13 109635126 109635282 -10109616 + LTR16C LTR ERVL 287 451 -40 433 309 82 21 chr13 109636217 109636460 -10108438 - L1ME1 LINE L1 -5 6161 5904 28 71 0 0 chr13 109636716 109636772 -10108126 + AT_rich Low_complexity Low_complexity 1 56 0 5302 111 4 7 chr13 109636844 109637619 -10107279 - L1PA10 LINE L1 -1 6482 5710 22887 189 23 31 chr13 109637803 109640969 -10103929 - L1PA10 LINE L1 -778 5683 2592 1797 145 0 36 chr13 109640969 109641273 -10103625 - AluSq SINE Alu -18 295 3 22887 189 23 31 chr13 109641273 109643835 -10101063 - L1PA10 LINE L1 -3869 2592 10 1412 199 15 92 chr13 109643899 109644292 -10100606 + MLT1A1 LTR MaLR 1 363 -2 842 255 150 45 chr13 109644608 109645027 -10099871 - MLT1C LTR MaLR 0 467 5 257 237 0 13 chr13 109645263 109645339 -10099559 + (CA)n Simple_repeat Simple_repeat 2 76 0 621 261 0 0 chr13 109645360 109645540 -10099358 + (CA)n Simple_repeat Simple_repeat 1 180 0 717 239 0 0 chr13 109645568 109645748 -10099150 + (CA)n Simple_repeat Simple_repeat 1 180 0 21 57 0 0 chr13 109647518 109647553 -10097345 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr13 109647639 109647673 -10097225 + AT_rich Low_complexity Low_complexity 1 34 0 3647 151 40 10 chr13 109648035 109648709 -10096189 + Tigger3(Golem) DNA MER2_type 2335 3028 -1 237 65 0 0 chr13 109651898 109651929 -10092969 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr13 109653467 109653495 -10091403 + AT_rich Low_complexity Low_complexity 1 28 0 290 293 0 0 chr13 109654381 109654456 -10090442 + MIR SINE MIR 116 190 -72 498 269 150 75 chr13 109655323 109655683 -10089215 - L2 LINE L2 0 3313 2878 2336 86 0 9 chr13 109655683 109655998 -10088900 + AluSx SINE Alu 1 312 0 498 269 150 75 chr13 109655998 109656197 -10088701 - L2 LINE L2 -435 2878 2695 1208 236 122 33 chr13 109657051 109657242 -10087656 + MLT1D LTR MaLR 3 175 -330 2246 115 3 6 chr13 109657242 109657554 -10087344 + AluSx SINE Alu 1 311 -1 1208 236 122 33 chr13 109657554 109657820 -10087078 + MLT1D LTR MaLR 175 501 -4 24 0 0 0 chr13 109657869 109657893 -10087005 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr13 109658526 109658555 -10086343 + (T)n Simple_repeat Simple_repeat 1 29 0 522 304 185 19 chr13 109659266 109659579 -10085319 - L2 LINE L2 -4 3309 2945 2300 138 15 77 chr13 109659579 109660035 -10084863 - MSTA LTR MaLR 0 428 1 1316 119 0 0 chr13 109660220 109660429 -10084469 - AluY SINE Alu 0 335 127 23 0 0 0 chr13 109661354 109661377 -10083521 + AT_rich Low_complexity Low_complexity 1 23 0 623 344 43 27 chr13 109662495 109662824 -10082074 + L3 LINE CR1 1242 1575 -2 3408 221 36 53 chr13 109663087 109663834 -10081064 + L1MB1 LINE L1 5054 5813 -1995 354 23 0 0 chr13 109663834 109663877 -10081021 + (GA)n Simple_repeat Simple_repeat 2 44 0 3408 221 36 53 chr13 109663877 109664261 -10080637 + L1MB1 LINE L1 5813 6202 -1606 960 192 20 24 chr13 109664261 109664516 -10080382 + L1MA10 LINE L1 6070 6323 -11 3408 221 36 53 chr13 109664516 109664746 -10080152 + L1MB1 LINE L1 6202 7803 -5 23 33 0 0 chr13 109665399 109665429 -10079469 + AT_rich Low_complexity Low_complexity 1 30 0 1228 80 0 0 chr13 109665593 109665755 -10079143 - L1MA1 LINE L1 -26 6276 6115 1117 209 8 0 chr13 109665751 109665985 -10078913 + L1 LINE L1 2670 2905 -3241 * 1862 179 5 67 chr13 109667032 109667423 -10077475 - MLT1B LTR MaLR 0 390 24 269 182 0 0 chr13 109667511 109667555 -10077343 + 5S rRNA rRNA 2 45 -76 2712 178 21 54 chr13 109669207 109669837 -10075061 - L1MC1 LINE L1 0 6333 5725 25 0 0 0 chr13 109669879 109669904 -10074994 + AT_rich Low_complexity Low_complexity 1 25 0 1702 168 7 3 chr13 109669904 109670189 -10074709 - AluSx SINE Alu -26 286 1 1015 90 8 0 chr13 109670189 109670323 -10074575 - AluSq/x SINE Alu -177 135 1 286 339 25 0 chr13 109670964 109671082 -10073816 - L2 LINE L2 -620 2694 2574 188 321 67 45 chr13 109671114 109671248 -10073650 - MIR3 SINE MIR -40 168 32 1975 103 0 0 chr13 109671569 109671859 -10073039 + AluSx SINE Alu 31 320 0 1959 211 60 16 chr13 109673817 109674301 -10070597 - MLT1D LTR MaLR 0 505 1 21 36 0 0 chr13 109674749 109674777 -10070121 + AT_rich Low_complexity Low_complexity 1 28 0 2093 128 20 0 chr13 109675359 109675663 -10069235 + AluSx SINE Alu 3 312 0 203 305 116 26 chr13 109676948 109677226 -10067672 + L2 LINE L2 2637 2934 -338 412 283 62 78 chr13 109677621 109677879 -10067019 + MIR SINE MIR 9 262 0 312 27 0 0 chr13 109678347 109678384 -10066514 + (TG)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr13 109678434 109678458 -10066440 + AT_rich Low_complexity Low_complexity 1 24 0 1994 127 3 0 chr13 109679083 109679397 -10065501 - L1PA14 LINE L1 -3 6158 5844 5923 165 8 8 chr13 109679432 109681220 -10063678 - L1PA14 LINE L1 -225 5949 4209 1880 100 0 15 chr13 109681944 109682204 -10062694 - AluSg1 SINE Alu -14 295 40 339 355 106 11 chr13 109682532 109682721 -10062177 + MIR SINE MIR 41 247 -15 204 40 0 0 chr13 109682830 109682855 -10062043 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 195 100 0 0 chr13 109683315 109683345 -10061553 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 109683908 109683929 -10060969 + AT_rich Low_complexity Low_complexity 1 21 0 329 254 5 2 chr13 109685047 109685468 -10059430 + (CA)n Simple_repeat Simple_repeat 1 422 0 317 311 0 0 chr13 109685495 109685614 -10059284 + (CA)n Simple_repeat Simple_repeat 2 120 0 219 242 0 0 chr13 109685647 109685746 -10059152 + (CA)n Simple_repeat Simple_repeat 2 100 0 2077 147 6 18 chr13 109685772 109686113 -10058785 - MER1B DNA MER1_type 0 337 1 2195 86 4 0 chr13 109686219 109686545 -10058353 + AluSx SINE Alu 3 329 0 224 303 40 0 chr13 109688218 109688294 -10056604 - L2 LINE L2 -15 3298 3220 264 299 0 0 chr13 109689090 109689157 -10055741 + MIR3 SINE MIR 111 177 -31 21 0 0 0 chr13 109689680 109689701 -10055197 + AT_rich Low_complexity Low_complexity 1 21 0 2546 43 0 7 chr13 109690610 109690911 -10053987 + AluY SINE Alu 1 299 -12 468 136 0 12 chr13 109691503 109691584 -10053314 + MADE1 DNA Mariner 1 80 0 21 0 0 0 chr13 109691793 109691814 -10053084 + AT_rich Low_complexity Low_complexity 1 21 0 204 226 19 0 chr13 109692557 109692610 -10052288 + (TG)n Simple_repeat Simple_repeat 2 55 0 982 153 0 0 chr13 109693366 109693516 -10051382 + FRAM SINE Alu 1 149 -27 1655 230 92 37 chr13 109694392 109694935 -10049963 + MLT1E3 LTR MaLR 1 573 -51 1756 156 53 6 chr13 109694935 109695274 -10049624 + MSTA LTR MaLR 3 357 -71 387 41 0 0 chr13 109695443 109695492 -10049406 + (TG)n Simple_repeat Simple_repeat 2 50 0 188 0 74 0 chr13 109696615 109696642 -10048256 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr13 109697464 109697489 -10047409 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 109698516 109698540 -10046358 + AT_rich Low_complexity Low_complexity 1 24 0 2175 111 3 13 chr13 109699303 109699610 -10045288 + AluSx SINE Alu 6 309 -3 765 305 95 37 chr13 109699615 109700025 -10044873 - MLT1J1 LTR MaLR -10 436 3 216 100 17 33 chr13 109700292 109700352 -10044546 + (TA)n Simple_repeat Simple_repeat 2 60 0 330 263 20 0 chr13 109700473 109700572 -10044326 - MIR SINE MIR -25 237 137 25 31 0 0 chr13 109701227 109701259 -10043639 + AT_rich Low_complexity Low_complexity 1 32 0 289 360 8 16 chr13 109701990 109702115 -10042783 + L2 LINE L2 3162 3285 -28 2863 128 9 18 chr13 109702659 109703113 -10041785 - L1PA16 LINE L1 -9 6157 5708 21 0 0 0 chr13 109703303 109703324 -10041574 + AT_rich Low_complexity Low_complexity 1 21 0 842 301 90 46 chr13 109703833 109704562 -10040336 - L2 LINE L2 -134 3179 2415 216 163 0 0 chr13 109704814 109704857 -10040041 + (CA)n Simple_repeat Simple_repeat 2 44 0 205 196 22 0 chr13 109705991 109706037 -10038861 + (CA)n Simple_repeat Simple_repeat 2 48 0 313 231 42 77 chr13 109709728 109709871 -10035027 - HAL1 LINE L1 -2358 149 12 32 0 0 0 chr13 109710375 109710407 -10034491 + AT_rich Low_complexity Low_complexity 1 32 0 532 172 83 7 chr13 109710512 109710657 -10034241 + MER69 DNA AcHobo 2174 2329 -197 289 294 130 0 chr13 109710861 109710953 -10033945 + MER69 DNA AcHobo 1 104 -1122 303 385 20 7 chr13 109711467 109711615 -10033283 - MIR SINE MIR -102 160 11 219 309 12 12 chr13 109714738 109714819 -10030079 + CT-rich Low_complexity Low_complexity 5 85 0 225 0 0 0 chr13 109716848 109716873 -10028025 + (CA)n Simple_repeat Simple_repeat 2 26 0 204 40 0 0 chr13 109716917 109716942 -10027956 + (TA)n Simple_repeat Simple_repeat 1 25 0 410 246 225 7 chr13 109717972 109718114 -10026784 - MER5A DNA MER1_type -6 183 11 925 241 122 0 chr13 109721868 109722212 -10022686 + LTR37A LTR ERV1 39 424 -2 6117 57 3 5 chr13 109722547 109723320 -10021578 - L1PA7 LINE L1 0 6154 5384 21 0 0 0 chr13 109723532 109723553 -10021345 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 109724119 109724143 -10020755 + AT_rich Low_complexity Low_complexity 1 24 0 345 259 77 24 chr13 109724483 109724653 -10020245 - L1ME4a LINE L1 -3 6118 5940 3411 160 92 35 chr13 109724768 109725549 -10019349 + LTR1B LTR ERV1 1 826 0 2142 98 0 10 chr13 109725728 109726024 -10018874 + AluSx SINE Alu 3 295 -17 1700 133 0 0 chr13 109726155 109726459 -10018439 + AluSq SINE Alu 30 333 0 30 0 0 0 chr13 109726565 109726595 -10018303 + AT_rich Low_complexity Low_complexity 1 30 0 250 163 35 23 chr13 109726787 109726873 -10018025 + GA-rich Low_complexity Low_complexity 2 88 0 1959 155 33 17 chr13 109727873 109728235 -10016663 - THE1C LTR MaLR 0 375 8 284 149 0 15 chr13 109728358 109728425 -10016473 + (TA)n Simple_repeat Simple_repeat 2 67 0 561 194 37 37 chr13 109729101 109729235 -10015663 - FLAM_A SINE Alu -8 134 1 395 350 67 40 chr13 109729404 109730030 -10014868 - L1M4 LINE L1 -746 5400 4758 579 305 23 6 chr13 109730206 109730380 -10014518 + L1MC4a LINE L1 5480 5656 -2152 248 302 163 17 chr13 109730515 109730620 -10014278 + L1MC4a LINE L1 5841 5929 -1879 324 0 0 0 chr13 109730620 109730656 -10014242 + (TA)n Simple_repeat Simple_repeat 2 37 0 248 302 163 17 chr13 109730656 109730845 -10014053 + L1MC4a LINE L1 5929 6178 -1630 464 281 143 21 chr13 109730899 109731257 -10013641 + L1MC4 LINE L1 6563 6893 -915 963 265 101 12 chr13 109731572 109731908 -10012990 - MER57B LTR ERV1 -1 433 68 23 0 0 0 chr13 109732386 109732409 -10012489 + AT_rich Low_complexity Low_complexity 1 23 0 283 200 24 40 chr13 109734433 109734558 -10010340 + (TAA)n Simple_repeat Simple_repeat 3 125 0 2357 79 0 25 chr13 109734931 109735248 -10009650 + AluY SINE Alu 1 309 -2 536 219 168 19 chr13 109738266 109738308 -10006590 + MER58A DNA MER1_type 46 80 -2340 221 83 28 0 chr13 109738308 109738344 -10006554 + (TG)n Simple_repeat Simple_repeat 2 38 0 536 219 168 19 chr13 109738344 109738456 -10006442 + MER58A DNA MER1_type 80 223 -1 266 345 77 44 chr13 109738570 109738730 -10006168 + MIR SINE MIR 32 197 -11 7644 153 18 10 chr13 109739084 109740369 -10004529 + HSMAR2 DNA Mariner 7 1301 -1 307 120 0 0 chr13 109740681 109740731 -10004167 + MADE1 DNA Mariner 31 80 0 24 53 0 0 chr13 109741027 109741065 -10003833 + AT_rich Low_complexity Low_complexity 1 38 0 21 82 0 0 chr13 109741555 109741604 -10003294 + AT_rich Low_complexity Low_complexity 1 49 0 23 92 0 0 chr13 109743666 109743731 -10001167 + AT_rich Low_complexity Low_complexity 1 65 0 723 299 35 24 chr13 109743961 109744249 -10000649 - L1MCb LINE L1 -5754 291 1 5648 209 30 38 chr13 109744347 109745108 -9999790 + L1MC3 LINE L1 6405 7152 -633 2003 84 14 47 chr13 109745108 109745404 -9999494 + AluSc SINE Alu 20 305 -4 5648 209 30 38 chr13 109745404 109746034 -9998864 + L1MC3 LINE L1 7152 7785 0 2437 68 0 0 chr13 109746038 109746349 -9998549 + AluY SINE Alu 1 311 0 28 71 0 0 chr13 109747349 109747405 -9997493 + AT_rich Low_complexity Low_complexity 1 56 0 247 221 115 73 chr13 109747463 109747612 -9997286 + L1ME3 LINE L1 6007 6160 -10 2048 128 12 6 chr13 109747676 109748003 -9996895 - L1PA11 LINE L1 0 6174 5846 322 228 92 65 chr13 109748043 109748227 -9996671 + L1M4 LINE L1 2314 2502 -3644 356 285 64 85 chr13 109749393 109749688 -9995210 + LTR16A1 LTR ERVL 10 298 -159 21 0 0 0 chr13 109750363 109750384 -9994514 + AT_rich Low_complexity Low_complexity 1 21 0 1923 145 26 54 chr13 109750781 109751167 -9993731 - THE1C LTR MaLR 0 375 1 240 210 37 0 chr13 109751169 109751250 -9993648 + GA-rich Low_complexity Low_complexity 1 84 0 25 31 0 0 chr13 109752027 109752059 -9992839 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 109752353 109752376 -9992522 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr13 109752859 109752895 -9992003 + AT_rich Low_complexity Low_complexity 1 36 0 2047 118 10 0 chr13 109753501 109753790 -9991108 + AluSg SINE Alu 1 292 -18 5403 157 6 12 chr13 109753840 109754814 -9990084 - L1PA11 LINE L1 -1275 4871 3904 6106 97 12 23 chr13 109754815 109756135 -9988763 + L1PA11 LINE L1 4861 6174 0 25 31 0 0 chr13 109756910 109756942 -9987956 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 109757749 109757777 -9987121 + AT_rich Low_complexity Low_complexity 1 28 0 6594 145 57 4 chr13 109757803 109758965 -9985933 + Tigger3b DNA MER2_type 9 1231 0 366 295 100 58 chr13 109759189 109760066 -9984832 - L1MC4 LINE L1 -141 7901 6988 470 200 44 37 chr13 109760104 109760239 -9984659 - L1MC4 LINE L1 -1193 6849 6714 1134 306 85 41 chr13 109760600 109761284 -9983614 - ERVL LTR ERVL -2944 2820 2107 262 257 27 14 chr13 109761509 109761583 -9983315 - ERVL LTR ERVL -3857 1797 1723 25 51 0 0 chr13 109765933 109765972 -9978926 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr13 109766008 109766045 -9978853 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr13 109766139 109766180 -9978718 + AT_rich Low_complexity Low_complexity 1 41 0 266 341 0 12 chr13 109766180 109766262 -9978636 - LTR16C LTR ERVL -126 365 285 885 213 50 5 chr13 109768466 109768687 -9976211 + L1M4 LINE L1 1168 1398 -5144 1304 225 46 19 chr13 109768700 109769117 -9975781 + L1MB7 LINE L1 5757 6184 0 307 343 124 3 chr13 109769906 109770112 -9974786 - MIR3 SINE MIR -22 240 15 1487 114 0 27 chr13 109771498 109771718 -9973180 + THE1C LTR MaLR 1 214 -161 2725 142 83 8 chr13 109771718 109772198 -9972700 - LTR1 LTR ERV1 0 785 270 265 195 110 123 chr13 109772307 109772461 -9972437 - LTR1 LTR ERV1 -431 354 203 * 1168 184 27 12 chr13 109772437 109772693 -9972205 - LTR1 LTR ERV1 -514 271 12 1111 133 16 25 chr13 109772667 109772869 -9972029 + THE1C LTR MaLR 199 375 0 * 29 70 0 0 chr13 109773097 109773154 -9971744 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chr13 109773376 109773412 -9971486 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr13 109773719 109773747 -9971151 + AT_rich Low_complexity Low_complexity 1 28 0 212 319 11 0 chr13 109773802 109773893 -9971005 + (TA)n Simple_repeat Simple_repeat 2 93 0 22 56 0 0 chr13 109774023 109774059 -9970839 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr13 109774669 109774690 -9970208 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 976 231 51 37 chr13 109774839 109775133 -9969765 + ERVL LTR ERVL 3669 3966 -1798 * 1240 295 30 31 chr13 109775131 109775984 -9968914 + ERVL LTR ERVL 4286 5180 -584 761 281 27 26 chr13 109776080 109776483 -9968415 + MLT2E LTR ERVL 183 628 0 188 67 33 0 chr13 109776964 109776994 -9967904 + (TG)n Simple_repeat Simple_repeat 1 31 0 1915 125 3 39 chr13 109777184 109777496 -9967402 - AluSx SINE Alu -11 301 1 1292 154 21 13 chr13 109777946 109778180 -9966718 - L1PA16 LINE L1 -2 6164 5929 214 182 0 0 chr13 109778338 109778382 -9966516 + A-rich Low_complexity Low_complexity 3 46 0 3119 37 0 3 chr13 109778681 109779060 -9965838 + L1PA5 LINE L1 5777 6154 0 414 0 0 0 chr13 109779062 109779108 -9965790 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr13 109779304 109779333 -9965565 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 109779567 109779589 -9965309 + AT_rich Low_complexity Low_complexity 1 22 0 313 203 22 17 chr13 109779767 109779954 -9964944 + (TA)n Simple_repeat Simple_repeat 1 188 0 803 176 0 0 chr13 109780021 109780152 -9964746 - FRAM SINE Alu -26 150 20 342 287 75 78 chr13 109780655 109781121 -9963777 + L1MEd LINE L1 1089 1583 -4727 220 328 0 0 chr13 109781219 109781280 -9963618 + L2 LINE L2 3246 3306 -7 307 324 65 14 chr13 109781346 109781485 -9963413 + Charlie2b DNA MER1_type 1 146 -2716 1008 32 32 0 chr13 109781510 109781634 -9963264 - L1PA5 LINE L1 -6 6148 6021 324 333 65 43 chr13 109781702 109781933 -9962965 + Charlie2b DNA MER1_type 247 482 -2380 323 263 108 36 chr13 109781931 109782125 -9962773 + Charlie2b DNA MER1_type 926 1133 -1649 * 4322 118 22 5 chr13 109782258 109782895 -9962003 + HSMAR1 DNA Mariner 640 1287 0 728 176 7 13 chr13 109782895 109783048 -9961850 - L1M1 LINE L1 -5276 2289 2138 * 7979 188 40 40 chr13 109783031 109783318 -9961580 - L1M1 LINE L1 -5901 1664 1378 1236 222 51 14 chr13 109783318 109783593 -9961305 + AluJo SINE Alu 2 286 -16 7979 188 40 40 chr13 109783593 109784958 -9959940 - L1M1 LINE L1 -6186 1379 12 526 220 19 37 chr13 109784961 109785175 -9959723 - L1ME LINE L1 -682 5482 5273 28 29 0 0 chr13 109785190 109785225 -9959673 + AT_rich Low_complexity Low_complexity 1 35 0 2324 88 0 7 chr13 109785410 109785718 -9959180 - AluY SINE Alu -5 306 1 870 273 66 34 chr13 109785785 109786225 -9958673 - L1ME LINE L1 -1209 4937 4484 1642 163 54 6 chr13 109789561 109789893 -9955005 - L1MCa LINE L1 -5257 1169 822 1645 185 54 3 chr13 109789922 109790219 -9954679 - AluJb SINE Alu 0 312 1 1232 203 32 92 chr13 109790226 109790606 -9954292 - MLT1A1 LTR MaLR 0 365 9 3439 187 42 67 chr13 109790612 109791436 -9953462 - L1MCa LINE L1 -5601 825 22 486 257 171 0 chr13 109791732 109791884 -9953014 + MER5A DNA MER1_type 12 189 0 356 311 0 8 chr13 109792705 109792827 -9952071 + (TATATG)n Simple_repeat Simple_repeat 3 123 0 643 233 78 44 chr13 109793265 109793471 -9951427 + L1MC4 LINE L1 7595 7807 -235 2340 204 13 24 chr13 109793482 109793541 -9951357 - L1MC1 LINE L1 -1 6332 6274 2048 123 7 20 chr13 109793541 109793841 -9951057 + AluSg SINE Alu 1 296 -14 2340 204 13 24 chr13 109793841 109794321 -9950577 - L1MC1 LINE L1 -59 6274 5799 13955 150 29 6 chr13 109794333 109796332 -9948566 + Tigger1 DNA MER2_type 30 2091 -327 1678 181 24 7 chr13 109796332 109796625 -9948273 + AluJo SINE Alu 3 300 -12 13955 150 29 6 chr13 109796625 109796961 -9947937 + Tigger1 DNA MER2_type 2091 2418 0 2080 180 14 47 chr13 109796964 109797260 -9947638 - L1MC1 LINE L1 -546 5798 5519 2069 154 3 23 chr13 109797260 109797604 -9947294 - MER1B DNA MER1_type 0 337 1 2080 180 14 47 chr13 109797604 109797734 -9947164 - L1MC1 LINE L1 -825 5519 5386 311 241 109 77 chr13 109797733 109797796 -9947102 + L1MC4 LINE L1 7816 7876 -166 * 246 32 0 0 chr13 109797796 109797827 -9947071 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1800 128 0 54 chr13 109797829 109798125 -9946773 - AluSg SINE Alu -30 280 1 311 241 109 77 chr13 109798125 109798278 -9946620 + L1MC4 LINE L1 7876 8042 0 321 317 82 67 chr13 109800749 109801371 -9943527 - L2 LINE L2 -1 3312 2616 2868 250 9 0 chr13 109801422 109802069 -9942829 - MER82 DNA MER2_type 0 653 1 22 0 0 0 chr13 109802507 109802529 -9942369 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr13 109802707 109802763 -9942135 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr13 109803287 109803319 -9941579 + AT_rich Low_complexity Low_complexity 1 32 0 243 311 55 37 chr13 109803464 109803628 -9941270 + HAL1 LINE L1 2297 2463 -44 653 315 63 24 chr13 109803946 109804279 -9940619 - L2 LINE L2 -502 2812 2467 227 259 0 0 chr13 109804309 109804367 -9940531 - L2 LINE L2 -978 2336 2279 2190 81 0 0 chr13 109806517 109806790 -9938108 - AluSg SINE Alu -17 293 21 383 231 200 8 chr13 109807234 109807364 -9937534 - MER110A LTR ERV1 -229 239 85 345 338 29 22 chr13 109807669 109807808 -9937090 - MIR SINE MIR -115 147 8 1999 114 45 0 chr13 109807948 109808238 -9936660 + AluSg1 SINE Alu 1 303 -6 513 304 80 22 chr13 109808619 109809155 -9935743 - L1MEd LINE L1 -1312 4817 4251 55 16 0 0 chr13 109809197 109809259 -9935639 + AT_rich Low_complexity Low_complexity 1 62 0 284 18 0 70 chr13 109809483 109809540 -9935358 + (CTAGT)n Simple_repeat Simple_repeat 3 55 0 491 315 73 60 chr13 109809582 109810905 -9933993 - L1MEd LINE L1 -2079 4050 2712 743 271 19 23 chr13 109810911 109811125 -9933773 - MER20 DNA MER1_type -6 213 1 304 228 0 0 chr13 109811680 109811737 -9933161 - L1MC4 LINE L1 -1334 6708 6652 183 164 14 27 chr13 109811762 109811835 -9933063 + (TA)n Simple_repeat Simple_repeat 2 73 0 394 320 60 55 chr13 109811877 109812296 -9932602 - L1MEd LINE L1 -4910 1209 789 648 118 0 0 chr13 109812338 109812431 -9932467 + AluSg/x SINE Alu 202 294 -15 27 29 0 0 chr13 109812432 109812466 -9932432 + AT_rich Low_complexity Low_complexity 1 34 0 2454 37 37 0 chr13 109812918 109813218 -9931680 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 109813262 109813283 -9931615 + AT_rich Low_complexity Low_complexity 1 21 0 462 100 0 0 chr13 109815144 109815214 -9929684 - AluSp/q SINE Alu -16 297 228 21 36 0 0 chr13 109815707 109815735 -9929163 + AT_rich Low_complexity Low_complexity 1 28 0 958 239 203 36 chr13 109816780 109817450 -9927448 + Zaphod DNA AcHobo 193 974 -3057 782 290 134 11 chr13 109817471 109817843 -9927055 + Zaphod DNA AcHobo 3614 4031 0 292 276 26 92 chr13 109818857 109819009 -9925889 + MIR SINE MIR 60 201 -61 207 0 0 0 chr13 109819700 109819723 -9925175 + (CA)n Simple_repeat Simple_repeat 1 23 0 1214 200 33 4 chr13 109819820 109820065 -9924833 + AluJo SINE Alu 49 300 -12 473 300 140 61 chr13 109820863 109821319 -9923579 - MLT1L LTR MaLR -15 600 109 2553 35 3 6 chr13 109822274 109822585 -9922313 - AluY SINE Alu -1 310 1 527 344 68 10 chr13 109823336 109823812 -9921086 + HERVL LTR ERVL 2241 2826 -2170 1503 364 55 23 chr13 109824048 109825357 -9919541 + HERVL LTR ERVL 3162 4512 -1252 841 256 113 81 chr13 109826635 109827195 -9917703 - MLT1G1 LTR MaLR -17 578 11 190 299 103 98 chr13 109827247 109827846 -9917052 + L2 LINE L2 1471 2072 -1242 232 333 30 23 chr13 109827995 109828127 -9916771 + L2 LINE L2 2140 2272 -1042 2021 121 60 30 chr13 109828639 109829003 -9915895 + THE1C LTR MaLR 1 375 0 729 103 103 0 chr13 109829588 109829714 -9915184 + MER85 DNA T2_type 1 139 0 6999 45 0 0 chr13 109829739 109830598 -9914300 - L1PA6 LINE L1 0 6154 5296 3060 211 52 9 chr13 109833302 109834037 -9910861 - L1MB8 LINE L1 -8 6170 5405 375 338 88 34 chr13 109834104 109834424 -9910474 - L2 LINE L2 -123 3190 2854 200 338 12 0 chr13 109834432 109834512 -9910386 + MIR SINE MIR 182 262 0 22 0 0 0 chr13 109834620 109834642 -9910256 + AT_rich Low_complexity Low_complexity 1 22 0 187 250 176 0 chr13 109835481 109835549 -9909349 + MIR SINE MIR 104 183 -79 333 333 237 18 chr13 109835733 109836130 -9908768 + L2 LINE L2 2830 3313 0 970 91 8 0 chr13 109836234 109836366 -9908532 - AluSg SINE Alu -177 133 1 342 242 204 8 chr13 109836466 109836598 -9908300 + MER5A DNA MER1_type 26 183 -6 4755 32 0 2 chr13 109836790 109837377 -9907521 + L1PA3 LINE L1 1968 2553 -3593 4707 43 0 0 chr13 109837375 109837981 -9906917 + L1PA3 LINE L1 2969 3574 -2572 * 14725 29 1 0 chr13 109838081 109840606 -9904292 + L1PA3 LINE L1 3626 6152 -3 590 246 29 29 chr13 109841629 109841804 -9903094 - MER20 DNA MER1_type -40 179 5 24 22 0 43 chr13 109841842 109841871 -9903027 + AT_rich Low_complexity Low_complexity 1 29 -15 2573 29 7 0 chr13 109841871 109842177 -9902721 - AluY SINE Alu -3 308 1 24 22 0 43 chr13 109842177 109842193 -9902705 + AT_rich Low_complexity Low_complexity 29 44 0 237 346 152 21 chr13 109842754 109843089 -9901809 + L2 LINE L2 2597 2975 -339 307 71 0 0 chr13 109843306 109843348 -9901550 - AluY SINE Alu -204 97 56 6036 160 50 11 chr13 109848089 109849273 -9895625 - Tigger3b DNA MER2_type 0 1231 2 220 268 28 0 chr13 109849273 109849344 -9895554 + (TA)n Simple_repeat Simple_repeat 1 73 0 213 333 121 0 chr13 109850271 109850370 -9894528 + L2 LINE L2 3154 3264 -8 402 179 34 26 chr13 109851672 109851789 -9893109 - MER96B DNA MER1_type? -260 157 40 21 57 0 0 chr13 109851823 109851858 -9893040 + AT_rich Low_complexity Low_complexity 1 35 0 29 78 0 0 chr13 109851985 109852049 -9892849 + AT_rich Low_complexity Low_complexity 1 64 0 225 0 0 0 chr13 109853310 109853335 -9891563 + (A)n Simple_repeat Simple_repeat 1 25 0 374 327 147 6 chr13 109855227 109855383 -9889515 + MER5A DNA MER1_type 9 186 -3 217 203 0 27 chr13 109856203 109856277 -9888621 + CT-rich Low_complexity Low_complexity 1 72 0 207 158 0 70 chr13 109856297 109856354 -9888544 + CT-rich Low_complexity Low_complexity 3 55 0 24 77 0 0 chr13 109857390 109857442 -9887456 + AT_rich Low_complexity Low_complexity 1 52 0 2459 104 13 11 chr13 109857807 109858181 -9886717 - THE1C LTR MaLR 0 375 1 389 297 59 49 chr13 109858184 109858388 -9886510 - MIR SINE MIR -38 224 20 207 221 29 15 chr13 109859079 109859147 -9885751 + (TTCA)n Simple_repeat Simple_repeat 1 69 0 252 281 0 0 chr13 109860101 109860190 -9884708 + (TG)n Simple_repeat Simple_repeat 2 90 0 7879 62 4 2 chr13 109862148 109863942 -9880956 - L1PA5 LINE L1 -6 6148 4353 29 47 0 0 chr13 109865559 109865602 -9879296 + AT_rich Low_complexity Low_complexity 1 43 0 706 215 17 17 chr13 109866200 109866372 -9878526 + LTR40a LTR ERVL 20 191 -328 2626 39 0 0 chr13 109866701 109867007 -9877891 + AluY SINE Alu 1 306 -5 1877 95 43 3 chr13 109867203 109867529 -9877369 + Tigger3(Golem) DNA MER2_type 2240 2578 -451 2169 102 49 35 chr13 109867532 109867876 -9877022 - THE1B LTR MaLR -2 362 14 1717 204 60 25 chr13 109867888 109868320 -9876578 + Tigger3(Golem) DNA MER2_type 2583 3029 0 203 268 56 14 chr13 109868324 109868395 -9876503 + L2 LINE L2 2714 2787 -527 767 285 95 33 chr13 109868526 109869262 -9875636 + L2 LINE L2 2452 3232 -81 191 336 84 34 chr13 109869347 109869466 -9875432 + L2 LINE L2 2957 3081 -191 439 136 291 0 chr13 109869635 109869745 -9875153 - MER53 DNA DNA 0 189 48 26 50 0 0 chr13 109869942 109869982 -9874916 + AT_rich Low_complexity Low_complexity 1 40 0 1321 207 79 14 chr13 109870114 109870467 -9874431 - L1MD3 LINE L1 0 7995 7620 1327 181 27 4 chr13 109870916 109871176 -9873722 + L1MC/D LINE L1 5426 5691 -653 5429 141 46 5 chr13 109871185 109871535 -9873363 - L1PB1 LINE L1 -8 6859 6525 195 42 0 0 chr13 109871535 109871559 -9873339 + (TA)n Simple_repeat Simple_repeat 2 25 0 5429 141 46 5 chr13 109871559 109872429 -9872469 - L1PB1 LINE L1 -342 6525 5603 5417 28 0 0 chr13 109872420 109873055 -9871843 - L1PA4 LINE L1 -187 5968 5334 * 1574 42 0 0 chr13 109873055 109873245 -9871653 + L1PA4 LINE L1 5962 6152 -3 12243 206 7 11 chr13 109873285 109876038 -9868860 - L1PB1 LINE L1 -1279 5583 2842 6860 177 75 5 chr13 109876034 109878162 -9866736 - L1PB1 LINE L1 -4249 2614 192 * 204 97 0 0 chr13 109878732 109878763 -9866135 + (TG)n Simple_repeat Simple_repeat 2 32 0 1912 194 54 10 chr13 109878972 109879380 -9865518 - MSTB LTR MaLR 0 426 1 2241 90 3 35 chr13 109880278 109880590 -9864308 - AluY SINE Alu -9 302 1 1845 188 27 9 chr13 109880875 109881210 -9863688 - MER6 DNA MER2_type -471 394 54 520 361 46 0 chr13 109882886 109883191 -9861707 - L2 LINE L2 -60 3253 2935 470 284 175 0 chr13 109884587 109884770 -9860128 - MIR SINE MIR 0 262 48 426 336 8 0 chr13 109884974 109885108 -9859790 - MIR SINE MIR -90 172 38 25 0 0 0 chr13 109885308 109885333 -9859565 + AT_rich Low_complexity Low_complexity 1 25 0 833 319 90 5 chr13 109886107 109886614 -9858284 + L2 LINE L2 2709 3253 -60 542 153 41 82 chr13 109889304 109889474 -9855424 - MER58D DNA MER1_type 0 386 224 1374 262 34 60 chr13 109889502 109890064 -9854834 - MLT1E2 LTR MaLR 0 626 80 750 233 15 40 chr13 109890141 109890185 -9854713 - MER58D DNA MER1_type -2223 197 153 203 0 37 0 chr13 109890185 109890212 -9854686 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 750 233 15 40 chr13 109890212 109890369 -9854529 - MER58D DNA MER1_type -2267 153 1 2102 133 3 16 chr13 109890472 109890788 -9854110 + AluSx SINE Alu 1 312 0 312 300 58 26 chr13 109890840 109891030 -9853868 + L1ME4a LINE L1 5926 6121 0 360 382 20 0 chr13 109894668 109894820 -9850078 - MIR SINE MIR -88 174 20 246 279 82 16 chr13 109896024 109896146 -9848752 - MER103 DNA DNA -34 132 3 188 287 37 4 chr13 109896806 109896875 -9848023 + MIR SINE MIR 3 72 -136 1607 197 10 78 chr13 109897156 109897568 -9847330 + MLT1B LTR MaLR 1 384 -6 207 0 0 0 chr13 109897953 109897976 -9846922 + (A)n Simple_repeat Simple_repeat 1 23 0 1598 231 30 15 chr13 109898614 109899004 -9845894 - MLT1-int LTR MaLR -703 668 148 3188 109 2 6 chr13 109899004 109899471 -9845427 - L1PA10 LINE L1 -1 6167 5703 1598 231 30 15 chr13 109899471 109899620 -9845278 - MLT1-int LTR MaLR -1223 148 3 240 316 46 40 chr13 109901124 109901276 -9843622 - MIR SINE MIR -17 245 93 312 70 0 0 chr13 109903438 109903481 -9841417 + (TC)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr13 109904040 109904062 -9840836 + AT_rich Low_complexity Low_complexity 1 22 0 2239 55 0 4 chr13 109907493 109907767 -9837131 + AluY SINE Alu 39 311 0 221 116 0 23 chr13 109908167 109908210 -9836688 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 1022 192 50 0 chr13 109908508 109908706 -9836192 + MER2 DNA MER2_type 3 210 -135 292 352 12 34 chr13 109909129 109909293 -9835605 - MIR SINE MIR -51 157 45 1457 120 247 7 chr13 109909443 109909734 -9835164 + MER46B DNA MER2_type 1 236 0 978 93 0 0 chr13 109909952 109910091 -9834807 + (TA)n Simple_repeat Simple_repeat 2 140 0 240 111 0 0 chr13 109910206 109910242 -9834656 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 724 174 5 155 chr13 109911097 109911316 -9833582 + AluJb SINE Alu 102 287 -25 378 0 0 0 chr13 109911395 109911437 -9833461 + (CA)n Simple_repeat Simple_repeat 1 42 0 204 274 0 41 chr13 109912034 109912107 -9832791 + MIR SINE MIR 184 253 -9 181 324 88 27 chr13 109912431 109912579 -9832319 + L2 LINE L2 1638 1794 -1520 2222 110 10 0 chr13 109912580 109912880 -9832018 + AluSx SINE Alu 1 303 -9 1447 208 14 14 chr13 109912886 109913019 -9831879 + AluJb SINE Alu 1 133 -179 206 81 27 0 chr13 109913019 109913056 -9831842 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1447 208 14 14 chr13 109913056 109913210 -9831688 + AluJb SINE Alu 132 288 -24 1356 173 11 29 chr13 109913428 109913706 -9831192 + MLT1B LTR MaLR 117 389 -1 333 311 77 60 chr13 109913741 109913989 -9830909 + L2 LINE L2 2125 2376 -938 774 173 16 145 chr13 109914105 109914360 -9830538 - L1PA16 LINE L1 0 6166 5945 3764 146 20 7 chr13 109914361 109914959 -9829939 + MER41B LTR ERV1 1 606 -29 234 241 0 54 chr13 109915059 109915171 -9829727 + (CCCA)n Simple_repeat Simple_repeat 2 107 0 464 302 122 71 chr13 109915180 109915752 -9829146 + L1M2 LINE L1 714 1262 -5587 209 155 0 52 chr13 109915752 109915810 -9829088 + (CCCA)n Simple_repeat Simple_repeat 3 57 0 27 0 0 0 chr13 109918255 109918282 -9826616 + AT_rich Low_complexity Low_complexity 1 27 0 1913 144 0 7 chr13 109918749 109919067 -9825831 + AluSx SINE Alu 1 316 0 2677 290 62 59 chr13 109920026 109920178 -9824720 - L1MEc LINE L1 -4555 1841 1691 1814 181 0 6 chr13 109920178 109920492 -9824406 + AluJb SINE Alu 1 312 0 2677 290 62 59 chr13 109920492 109921029 -9823869 - L1MEc LINE L1 -4705 1691 1157 2171 102 3 3 chr13 109921029 109921322 -9823576 - AluSx SINE Alu -19 293 1 2677 290 62 59 chr13 109921322 109922433 -9822465 - L1MEc LINE L1 -5239 1157 36 283 170 26 165 chr13 109922433 109922663 -9822235 - LTR41 LTR ERVL -32 741 544 609 225 25 75 chr13 109922821 109923021 -9821877 - LTR41 LTR ERVL -579 194 5 360 304 51 34 chr13 109923023 109923260 -9821638 + L1ME3 LINE L1 5792 6032 -130 287 246 62 117 chr13 109925204 109925444 -9819454 - MLT1K LTR MaLR -171 417 191 25 0 0 0 chr13 109925696 109925721 -9819177 + AT_rich Low_complexity Low_complexity 1 25 0 1911 102 66 7 chr13 109926490 109926798 -9818100 + AluSx SINE Alu 1 312 0 203 262 36 71 chr13 109926834 109926918 -9817980 - L2 LINE L2 -567 2747 2667 266 301 14 0 chr13 109927056 109927129 -9817769 + MER5B DNA MER1_type 105 178 0 372 274 46 29 chr13 109927172 109927347 -9817551 + MER5B DNA MER1_type 1 178 0 180 179 0 0 chr13 109927468 109927507 -9817391 + (TG)n Simple_repeat Simple_repeat 1 39 0 227 339 94 37 chr13 109927510 109927755 -9817143 - L2 LINE L2 -961 2353 2095 24 53 0 0 chr13 109928077 109928115 -9816783 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 109928459 109928489 -9816409 + AT_rich Low_complexity Low_complexity 1 30 0 422 298 183 11 chr13 109928688 109928885 -9816013 + MIR SINE MIR 40 262 0 1038 276 146 23 chr13 109929240 109929672 -9815226 + MLT1D LTR MaLR 21 505 0 181 269 19 19 chr13 109929708 109929760 -9815138 + L2 LINE L2 2999 3050 -263 595 297 130 20 chr13 109929881 109930181 -9814717 + HAL1 LINE L1 1595 1927 -580 425 302 136 16 chr13 109930414 109930672 -9814226 + HAL1 LINE L1 2219 2507 0 22 70 0 0 chr13 109930682 109930725 -9814173 + AT_rich Low_complexity Low_complexity 1 43 0 675 251 38 5 chr13 109931036 109931247 -9813651 + L1MD3 LINE L1 7771 7988 -7 21 36 0 0 chr13 109931332 109931360 -9813538 + AT_rich Low_complexity Low_complexity 1 28 0 319 318 85 10 chr13 109931374 109931575 -9813323 + L1ME3A LINE L1 4882 5097 -1049 2795 187 13 19 chr13 109931829 109932365 -9812533 + L1MA2 LINE L1 17 549 -7016 * 4601 119 35 138 chr13 109932363 109933576 -9811322 + L1MA2 LINE L1 2461 3547 -4018 7941 205 51 37 chr13 109933682 109936215 -9808683 + L1MA2 LINE L1 4078 6751 -814 923 165 82 5 chr13 109936215 109936421 -9808477 - L1 LINE L1 -1784 4362 4141 5444 141 31 7 chr13 109936547 109937535 -9807363 + L1MA2 LINE L1 6710 7719 -4 490 332 91 32 chr13 109937557 109938036 -9806862 + L1ME3A LINE L1 5367 5869 -301 22 35 0 0 chr13 109938365 109938394 -9806504 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chr13 109939101 109939133 -9805765 + AT_rich Low_complexity Low_complexity 1 32 0 189 225 25 0 chr13 109939207 109939247 -9805651 + L2 LINE L2 3217 3257 -15 26 50 0 0 chr13 109939257 109939297 -9805601 + AT_rich Low_complexity Low_complexity 1 40 0 2088 121 3 16 chr13 109939312 109939619 -9805279 - AluSx SINE Alu -9 303 1 658 327 109 20 chr13 109939644 109940185 -9804713 - L2 LINE L2 0 3313 2723 400 282 124 76 chr13 109940183 109940474 -9804424 + L2 LINE L2 1242 1546 -1768 * 513 280 83 14 chr13 109940538 109940756 -9804142 - L2 LINE L2 -3080 234 2 259 242 61 15 chr13 109941922 109941988 -9802910 - MER5A DNA MER1_type -3 186 118 818 228 33 27 chr13 109942060 109942244 -9802654 - MER5A DNA MER1_type -3 186 2 2090 134 78 20 chr13 109942324 109942668 -9802230 - THE1B LTR MaLR 0 364 1 845 287 156 15 chr13 109942869 109943409 -9801489 + HAL1b LINE L1 353 968 -380 375 308 87 40 chr13 109943438 109943737 -9801161 + HAL1b LINE L1 1025 1337 -11 2556 199 9 0 chr13 109945436 109945899 -9798999 - MLT1C LTR MaLR 0 467 1 1849 147 77 79 chr13 109946418 109946457 -9798441 - MSTA LTR MaLR 0 428 390 2249 105 7 0 chr13 109946457 109946763 -9798135 + AluSg SINE Alu 1 308 -2 1849 147 77 79 chr13 109946763 109947152 -9797746 - MSTA LTR MaLR -38 390 1 2279 112 0 6 chr13 109948394 109948708 -9796190 - AluSx SINE Alu 0 312 1 435 125 0 0 chr13 109950542 109950614 -9794284 + (TA)n Simple_repeat Simple_repeat 1 72 0 2795 181 64 7 chr13 109951785 109952393 -9792505 - L1MB3 LINE L1 0 6183 5541 22 80 0 0 chr13 109954152 109954202 -9790696 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr13 109954231 109954268 -9790630 + AT_rich Low_complexity Low_complexity 1 37 0 197 299 81 0 chr13 109955150 109955237 -9789661 + MIR3 SINE MIR 104 197 -11 180 375 0 0 chr13 109956155 109956219 -9788679 - L2 LINE L2 -194 3078 3015 359 306 112 29 chr13 109956943 109957149 -9787749 + L2 LINE L2 3048 3270 -43 2204 113 0 3 chr13 109958114 109958414 -9786484 - AluSg SINE Alu -11 299 1 2246 103 0 3 chr13 109960070 109960372 -9784526 + AluSg SINE Alu 1 301 -9 206 216 0 0 chr13 109960372 109960415 -9784483 + T-rich Low_complexity Low_complexity 6 51 0 2576 113 11 3 chr13 109962826 109963197 -9781701 - THE1C LTR MaLR -1 374 1 29 104 0 0 chr13 109963657 109963763 -9781135 + AT_rich Low_complexity Low_complexity 1 106 0 1741 132 45 24 chr13 109963959 109964246 -9780652 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr13 109964246 109964273 -9780625 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr13 109964898 109964930 -9779968 + AT_rich Low_complexity Low_complexity 1 32 0 459 0 0 0 chr13 109966302 109966353 -9778545 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 21 71 0 0 chr13 109966424 109966466 -9778432 + AT_rich Low_complexity Low_complexity 1 42 0 1469 189 0 0 chr13 109967031 109967280 -9777618 - AluSx SINE Alu -63 249 1 24 0 0 0 chr13 109967859 109967883 -9777015 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr13 109967966 109968005 -9776893 + AT_rich Low_complexity Low_complexity 1 39 0 276 30 0 0 chr13 109968343 109968376 -9776522 + (CA)n Simple_repeat Simple_repeat 1 33 0 315 0 0 0 chr13 109968407 109968442 -9776456 + (CA)n Simple_repeat Simple_repeat 2 36 0 319 313 40 0 chr13 109970451 109970550 -9774348 - L1MC4 LINE L1 -1326 6716 6614 * 347 250 0 22 chr13 109970498 109970590 -9774308 + L1MC4 LINE L1 6614 6703 -1339 331 314 20 0 chr13 109970574 109970676 -9774222 - L1MC4 LINE L1 -1339 6703 6600 * 898 200 0 17 chr13 109970778 109970958 -9773940 + FRAM SINE Alu 1 176 0 21 36 0 0 chr13 109971079 109971107 -9773791 + AT_rich Low_complexity Low_complexity 1 28 0 1645 150 3 105 chr13 109971441 109971802 -9773096 + MER1B DNA MER1_type 1 324 -15 24 0 0 0 chr13 109972779 109972803 -9772095 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr13 109973670 109973707 -9771191 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr13 109974102 109974130 -9770768 + AT_rich Low_complexity Low_complexity 1 28 0 181 242 33 66 chr13 109974358 109974449 -9770449 - L3b LINE CR1 -319 1264 1177 22 35 0 0 chr13 109974810 109974839 -9770059 + AT_rich Low_complexity Low_complexity 1 29 0 354 206 14 0 chr13 109975637 109975710 -9769188 - MER116 DNA Mariner -5 75 2 493 306 38 16 chr13 109975746 109975929 -9768969 + MIR SINE MIR 38 224 -38 1869 165 128 8 chr13 109977771 109978153 -9766745 - MSTA LTR MaLR 0 428 1 219 175 25 0 chr13 109978210 109978250 -9766648 + GA-rich Low_complexity Low_complexity 3 43 0 706 277 103 64 chr13 109978280 109978843 -9766055 - MLT1E LTR MaLR -8 585 1 21 0 0 0 chr13 109979117 109979138 -9765760 + AT_rich Low_complexity Low_complexity 1 21 0 2048 136 3 0 chr13 109980120 109980415 -9764483 + AluSg SINE Alu 1 296 -14 31 0 0 0 chr13 109981760 109981791 -9763107 + AT_rich Low_complexity Low_complexity 1 31 0 1038 183 41 26 chr13 109982670 109982938 -9761960 - L1 LINE L1 -1765 4381 4110 1044 204 18 9 chr13 109983028 109983295 -9761603 - L1 LINE L1 -2039 4107 3823 3943 192 14 18 chr13 109983295 109984144 -9760754 + L1 LINE L1 4370 5215 -931 750 169 63 5 chr13 109984150 109984339 -9760559 + L1MA9 LINE L1 6112 6311 -1 633 173 181 0 chr13 109985224 109985351 -9759547 + LTR29-int LTR ERV1 480 629 -5702 * 1743 201 124 44 chr13 109985349 109985909 -9758989 + LTR29-int LTR ERV1 753 1399 -4932 1256 170 37 48 chr13 109986019 109986313 -9758585 + LTR29-int LTR ERV1 1372 1662 -4669 582 260 54 37 chr13 109986395 109986637 -9758261 + LTR29-int LTR ERV1 1517 1762 -4836 2258 188 22 56 chr13 109986699 109987289 -9757609 + LTR29-int LTR ERV1 2706 3275 -3056 9298 163 37 66 chr13 109987322 109989529 -9755369 + LTR29-int LTR ERV1 3640 5783 -548 321 297 74 34 chr13 109989520 109989668 -9755230 + LTR29-int LTR ERV1 4547 4700 -236 * 298 200 0 17 chr13 109989643 109989703 -9755195 + LTR29-int LTR ERV1 5960 6018 -313 * 299 222 0 0 chr13 109989884 109989947 -9754951 + LTR29 LTR ERV1 2 64 -558 471 196 62 0 chr13 109990475 109990572 -9754326 + LTR26B LTR ERV1 1 103 -428 189 107 0 0 chr13 109990796 109990824 -9754074 + (CA)n Simple_repeat Simple_repeat 2 29 0 2415 178 2 2 chr13 109990844 109991244 -9753654 + LTR26B LTR ERV1 121 520 -11 1205 214 101 47 chr13 109991306 109991336 -9753562 + LTR48B LTR ERV1 1 28 -616 2876 172 43 75 chr13 109991336 109992087 -9752811 - LTR8A LTR ERV1 0 727 1 1205 214 101 47 chr13 109992087 109992644 -9752254 + LTR48B LTR ERV1 28 644 0 849 243 28 0 chr13 109992725 109992902 -9751996 + MER20 DNA MER1_type 31 212 -7 4878 51 0 0 chr13 109994004 109994595 -9750303 - LTR10C LTR ERV1 0 591 1 2506 134 5 43 chr13 109994711 109995152 -9749746 + MSTB LTR MaLR 1 424 -2 3183 188 6 54 chr13 109995155 109995532 -9749366 + MSTB-int LTR MaLR 2 331 -1320 1588 26 0 0 chr13 109995532 109995722 -9749176 - L1PA4 LINE L1 -3 6152 5963 3183 188 6 54 chr13 109995722 109996047 -9748851 + MSTB-int LTR MaLR 331 670 -981 3758 154 61 32 chr13 109996064 109996818 -9748080 - LTR1 LTR ERV1 0 785 10 5413 183 9 3 chr13 109996829 109997791 -9747107 + MSTB-int LTR MaLR 684 1651 0 2196 141 52 54 chr13 109997791 109998218 -9746680 + MSTB LTR MaLR 1 426 0 1496 196 56 20 chr13 109998303 109998838 -9746060 - LTR48 LTR ERV1 0 644 1 222 274 0 0 chr13 109999077 109999128 -9745770 - L2 LINE L2 -21 3251 3201 249 206 0 0 chr13 109999132 109999200 -9745698 - L1MC4 LINE L1 -1338 6704 6637 3244 128 8 19 chr13 109999616 110000148 -9744750 - L1PB3 LINE L1 -8 6146 5621 239 324 0 0 chr13 110000878 110000946 -9743952 - MIR3 SINE MIR -24 184 117 294 29 0 0 chr13 110001648 110001683 -9743215 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr13 110002461 110002484 -9742414 + AT_rich Low_complexity Low_complexity 1 23 0 398 289 155 30 chr13 110002753 110002985 -9741913 - MIR SINE MIR 0 262 2 488 281 23 86 chr13 110003027 110003283 -9741615 + MIR SINE MIR 14 253 -9 232 233 22 78 chr13 110003602 110003692 -9741206 - L1MC4a LINE L1 -529 7279 7195 2429 199 60 36 chr13 110003720 110004357 -9740541 + L1MC3 LINE L1 7133 7784 -1 1415 132 119 0 chr13 110004655 110004874 -9740024 - AluSq SINE Alu -68 245 1 251 314 0 0 chr13 110005345 110005415 -9739483 - MIR SINE MIR -65 143 74 29 28 0 0 chr13 110005517 110005553 -9739345 + AT_rich Low_complexity Low_complexity 1 36 0 463 348 62 19 chr13 110006240 110006499 -9738399 + L2 LINE L2 504 773 -2541 735 281 130 10 chr13 110006501 110006800 -9738098 + L2 LINE L2 2578 2912 -402 402 246 95 34 chr13 110006952 110007131 -9737767 + L2 LINE L2 3107 3296 -17 2000 131 10 3 chr13 110007139 110007429 -9737469 + AluSg SINE Alu 2 293 -17 351 0 0 0 chr13 110009225 110009264 -9735634 + (CA)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chr13 110009625 110009660 -9735238 + AT_rich Low_complexity Low_complexity 1 35 0 1916 134 0 27 chr13 110011351 110011684 -9733214 + AluSx SINE Alu 1 325 0 23 33 0 0 chr13 110011863 110011893 -9733005 + AT_rich Low_complexity Low_complexity 1 30 0 290 255 161 7 chr13 110013340 110013489 -9731409 + L1MC5 LINE L1 7754 7925 -36 456 346 61 14 chr13 110013654 110013868 -9731030 + MIR SINE MIR 34 257 -5 2488 47 0 0 chr13 110014403 110014699 -9730199 - AluY SINE Alu -15 296 1 26 30 0 0 chr13 110015562 110015595 -9729303 + AT_rich Low_complexity Low_complexity 1 33 0 204 300 0 0 chr13 110016050 110016100 -9728798 + MIR SINE MIR 76 125 -83 336 323 93 6 chr13 110016213 110016374 -9728524 + MIR SINE MIR 61 235 -27 1120 181 97 97 chr13 110016426 110016930 -9727968 - MLT1D LTR MaLR -1 504 1 21 0 0 0 chr13 110018397 110018418 -9726480 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 110018636 110018658 -9726240 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 110018984 110019008 -9725890 + AT_rich Low_complexity Low_complexity 1 24 0 1912 195 74 0 chr13 110019494 110019929 -9724969 - MLT1C LTR MaLR 0 467 1 2077 145 0 6 chr13 110020464 110020775 -9724123 + AluSc SINE Alu 1 309 0 33 103 0 0 chr13 110021083 110021200 -9723698 + AT_rich Low_complexity Low_complexity 1 117 0 81 73 0 0 chr13 110021284 110021449 -9723449 + AT_rich Low_complexity Low_complexity 1 165 0 321 133 100 0 chr13 110021490 110021550 -9723348 + MLT2B1 LTR ERVL 455 520 0 4214 32 8 0 chr13 110022066 110022572 -9722326 - L1P LINE L1 -1557 4589 4080 234 0 0 0 chr13 110022572 110022598 -9722300 + (A)n Simple_repeat Simple_repeat 1 26 0 241 317 88 34 chr13 110023022 110023227 -9721671 - MLT1J LTR MaLR -293 218 3 260 246 0 31 chr13 110026378 110026443 -9718455 + MIR SINE MIR 13 75 -187 * 354 311 52 64 chr13 110026440 110026707 -9718191 - L2 LINE L2 0 3313 3050 317 294 83 73 chr13 110026752 110027174 -9717724 - L2 LINE L2 -415 2899 2403 673 159 35 0 chr13 110027720 110027833 -9717065 - FLAM_C SINE Alu -16 117 1 27 96 0 0 chr13 110028743 110028826 -9716072 + AT_rich Low_complexity Low_complexity 1 83 0 22 0 0 0 chr13 110028917 110028939 -9715959 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 110029759 110029788 -9715110 + AT_rich Low_complexity Low_complexity 1 29 0 948 269 100 26 chr13 110029877 110030078 -9714820 + MLT1D LTR MaLR 1 186 -319 375 23 0 0 chr13 110030078 110030122 -9714776 + (CA)n Simple_repeat Simple_repeat 1 44 0 948 269 100 26 chr13 110030122 110030381 -9714517 + MLT1D LTR MaLR 186 495 -10 311 399 66 5 chr13 110030755 110030968 -9713930 + LTR16C LTR ERVL 203 428 -63 366 254 93 44 chr13 110031765 110031970 -9712928 - MER58C DNA MER1_type 0 215 1 674 272 29 6 chr13 110031984 110032157 -9712741 - MER5A DNA MER1_type -5 184 8 501 295 56 91 chr13 110032632 110032971 -9711927 + ERVL LTR ERVL 2067 2393 -3371 1918 109 16 0 chr13 110033852 110034109 -9710789 - AluSg SINE Alu -11 299 39 197 365 103 13 chr13 110034393 110034455 -9710443 + L2 LINE L2 2174 2229 -1085 234 62 0 0 chr13 110034455 110034487 -9710411 + (TTG)n Simple_repeat Simple_repeat 2 33 0 197 365 103 13 chr13 110034487 110034580 -9710318 + L2 LINE L2 2229 2343 -971 341 358 132 19 chr13 110035088 110035733 -9709165 + L2 LINE L2 2346 3067 -205 2215 117 13 0 chr13 110036130 110036438 -9708460 + AluSx SINE Alu 1 312 0 21 36 0 0 chr13 110036660 110036688 -9708210 + AT_rich Low_complexity Low_complexity 1 28 0 301 323 16 0 chr13 110037441 110037568 -9707330 - MARNA DNA Mariner -215 371 243 285 29 0 0 chr13 110038574 110038608 -9706290 + (TG)n Simple_repeat Simple_repeat 1 34 0 649 294 98 17 chr13 110038978 110039274 -9705624 + L2 LINE L2 2056 2375 -939 538 289 114 50 chr13 110039539 110040226 -9704672 + L2 LINE L2 2379 3149 -164 21 0 0 0 chr13 110040313 110040334 -9704564 + AT_rich Low_complexity Low_complexity 1 21 0 303 311 99 31 chr13 110040506 110040728 -9704170 - L1ME LINE L1 -474 5647 5411 22 0 0 0 chr13 110040930 110040952 -9703946 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr13 110041210 110041253 -9703645 + AT_rich Low_complexity Low_complexity 1 43 0 423 0 0 0 chr13 110041298 110041345 -9703553 + (TA)n Simple_repeat Simple_repeat 2 48 0 2151 106 0 7 chr13 110043093 110043386 -9701512 + AluY SINE Alu 1 291 -20 661 267 161 44 chr13 110044547 110045098 -9699800 - L1ME3A LINE L1 -5 6165 5550 202 286 0 0 chr13 110046242 110046291 -9698607 - L2 LINE L2 0 3272 3224 2169 128 3 0 chr13 110046957 110047263 -9697635 + AluSx SINE Alu 4 310 -2 183 290 48 0 chr13 110047432 110047494 -9697404 + MIR3 SINE MIR 14 78 -130 240 143 0 0 chr13 110048602 110048644 -9696254 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr13 110048660 110048682 -9696216 + AT_rich Low_complexity Low_complexity 1 22 0 1409 188 80 19 chr13 110048727 110049041 -9695857 - MLT2C1 LTR ERVL -64 333 1 250 184 26 0 chr13 110050225 110050301 -9694597 + (TA)n Simple_repeat Simple_repeat 1 78 0 1976 144 150 8 chr13 110050714 110051088 -9693810 - MSTA LTR MaLR -1 427 1 184 440 9 0 chr13 110051176 110051292 -9693606 + L2 LINE L2 2744 2860 -454 22 56 0 0 chr13 110052721 110052757 -9692141 + AT_rich Low_complexity Low_complexity 1 36 0 216 304 0 25 chr13 110052867 110052946 -9691952 + GA-rich Low_complexity Low_complexity 4 80 0 * 689 177 11 15 chr13 110052898 110053178 -9691720 + GA-rich Low_complexity Low_complexity 1 278 0 906 288 65 56 chr13 110054828 110055367 -9689531 - MER115 DNA AcHobo 0 693 150 215 174 22 0 chr13 110057738 110057784 -9687114 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr13 110058112 110058137 -9686761 + AT_rich Low_complexity Low_complexity 1 25 0 279 0 0 0 chr13 110058528 110058559 -9686339 + (A)n Simple_repeat Simple_repeat 1 31 0 2306 92 7 3 chr13 110060093 110060398 -9684500 + AluSc SINE Alu 1 306 -3 2318 72 0 0 chr13 110061452 110061745 -9683153 + AluY SINE Alu 1 293 -18 245 235 0 12 chr13 110062264 110062345 -9682553 + (CA)n Simple_repeat Simple_repeat 1 80 0 315 333 105 13 chr13 110063482 110063635 -9681263 - MIR SINE MIR -17 245 79 321 277 45 39 chr13 110063908 110064063 -9680835 - MIR SINE MIR -34 228 73 21 57 0 0 chr13 110064149 110064184 -9680714 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr13 110064331 110064364 -9680534 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1409 195 14 40 chr13 110064366 110064663 -9680235 - AluJb SINE Alu -23 289 1 23 0 0 0 chr13 110064952 110064975 -9679923 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 110065504 110065533 -9679365 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr13 110065813 110065847 -9679051 + (CA)n Simple_repeat Simple_repeat 2 35 0 559 272 89 0 chr13 110067066 110067246 -9677652 + MIR SINE MIR 57 252 -10 572 299 78 21 chr13 110067520 110067869 -9677029 - MER110A LTR ERV1 0 468 143 725 329 38 8 chr13 110068048 110068288 -9676610 + MIR SINE MIR 15 261 -1 326 365 41 12 chr13 110068864 110069034 -9675864 + L2 LINE L2 2564 2738 -576 442 247 195 36 chr13 110069335 110069427 -9675471 - MER69 DNA AcHobo -4 2522 2446 1674 146 97 26 chr13 110069427 110069777 -9675121 + THE1C LTR MaLR 1 375 0 442 247 195 36 chr13 110069777 110069797 -9675101 - MER69 DNA AcHobo -80 2446 2431 1551 133 33 120 chr13 110069797 110070196 -9674702 - THE1B LTR MaLR 0 364 1 442 247 195 36 chr13 110070196 110070524 -9674374 - MER69 DNA AcHobo -95 2431 2011 784 296 84 29 chr13 110070525 110070904 -9673994 - MER69 DNA AcHobo -660 566 167 1470 143 12 12 chr13 110071068 110071313 -9673585 - AluSx SINE Alu -21 291 47 319 230 0 0 chr13 110071838 110071912 -9672986 + MER116 DNA Mariner 7 80 0 287 225 0 0 chr13 110072456 110072527 -9672371 - L1ME4a LINE L1 0 6121 6051 2320 239 37 7 chr13 110072659 110073248 -9671650 - L1MB8 LINE L1 -2 6176 5570 403 261 41 78 chr13 110073849 110074094 -9670804 + LTR16A LTR ERVL 163 398 -52 1167 257 24 56 chr13 110074209 110074622 -9670276 + MLT1D LTR MaLR 40 439 -66 248 0 31 0 chr13 110077887 110077919 -9666979 + (TA)n Simple_repeat Simple_repeat 1 33 0 124 70 0 0 chr13 110078030 110078273 -9666625 + AT_rich Low_complexity Low_complexity 1 243 0 210 143 0 0 chr13 110078904 110078939 -9665959 + (CA)n Simple_repeat Simple_repeat 1 35 0 27 0 0 0 chr13 110079033 110079060 -9665838 + AT_rich Low_complexity Low_complexity 1 27 0 2073 131 3 0 chr13 110079297 110079602 -9665296 + AluSx SINE Alu 1 306 -6 258 116 0 0 chr13 110079937 110079980 -9664918 + (A)n Simple_repeat Simple_repeat 1 43 0 336 249 59 147 chr13 110080690 110081179 -9663719 + HAL1 LINE L1 1014 1459 -1048 1969 162 18 9 chr13 110082196 110082530 -9662368 - MER1B DNA MER1_type 0 337 1 28 48 0 0 chr13 110082832 110082874 -9662024 + AT_rich Low_complexity Low_complexity 1 42 0 1593 184 0 32 chr13 110082887 110083202 -9661696 - AluJo SINE Alu -5 307 3 23 54 0 0 chr13 110083532 110083569 -9661329 + AT_rich Low_complexity Low_complexity 1 37 0 331 321 0 67 chr13 110083779 110083913 -9660985 + L2 LINE L2 3147 3271 -1 2246 109 0 3 chr13 110083929 110084240 -9660658 - AluSg SINE Alu 0 310 1 222 307 120 0 chr13 110086361 110086436 -9658462 + L2 LINE L2 3230 3313 0 209 223 53 0 chr13 110087087 110087181 -9657717 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 184 143 98 0 chr13 110087207 110087319 -9657579 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 191 144 90 0 chr13 110087372 110087483 -9657415 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 282 56 0 0 chr13 110087986 110088022 -9656876 + (TG)n Simple_repeat Simple_repeat 1 36 0 1701 236 72 60 chr13 110088080 110088346 -9656552 - MLT1E1 LTR MaLR -2 652 391 1039 112 155 39 chr13 110088346 110088552 -9656346 - MER30 DNA MER1_type 0 230 1 1701 236 72 60 chr13 110088552 110088883 -9656015 - MLT1E1 LTR MaLR -263 391 48 2041 128 0 0 chr13 110088934 110089223 -9655675 + AluSx SINE Alu 1 289 -23 300 364 8 8 chr13 110089624 110089742 -9655156 + MER5A DNA MER1_type 9 126 -63 24 0 0 0 chr13 110090369 110090393 -9654505 + AT_rich Low_complexity Low_complexity 1 24 0 609 246 128 33 chr13 110090683 110090894 -9654004 + MIR SINE MIR 18 248 -14 23 0 0 0 chr13 110091166 110091189 -9653709 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 110092619 110092642 -9652256 + AT_rich Low_complexity Low_complexity 1 23 0 245 300 40 40 chr13 110092658 110092758 -9652140 - MIR SINE MIR -13 249 150 23 0 0 0 chr13 110094484 110094507 -9650391 + AT_rich Low_complexity Low_complexity 1 23 0 410 301 52 10 chr13 110094523 110094716 -9650182 + HAL1 LINE L1 1443 1643 -864 3264 140 57 58 chr13 110095013 110095648 -9649250 - MER51A LTR ERV1 0 634 1 2961 148 25 4 chr13 110096075 110096562 -9648336 - LOR1a LTR ERV1 0 497 1 251 299 61 34 chr13 110096667 110096814 -9648084 + MIR SINE MIR 85 235 -27 2004 124 9 25 chr13 110096965 110097280 -9647618 - AluSx SINE Alu 0 312 3 1036 181 23 36 chr13 110097485 110097706 -9647192 - MER20 DNA MER1_type -1 218 1 342 365 63 25 chr13 110097781 110098066 -9646832 + LTR67 LTR ERVL 63 358 -199 884 204 16 0 chr13 110098119 110098310 -9646588 - MER105 DNA DNA -5 199 6 657 263 41 0 chr13 110098586 110098757 -9646141 - MER45A DNA AcHobo 0 178 1 27 0 0 0 chr13 110099119 110099146 -9645752 + AT_rich Low_complexity Low_complexity 1 27 0 1966 117 17 3 chr13 110099518 110099809 -9645089 + AluSq SINE Alu 1 295 -18 321 68 0 0 chr13 110100432 110100476 -9644422 + (CA)n Simple_repeat Simple_repeat 2 45 0 288 130 43 0 chr13 110100501 110100570 -9644328 + (TA)n Simple_repeat Simple_repeat 1 72 0 260 211 178 22 chr13 110100935 110101025 -9643873 + MER7A DNA MER2_type 26 127 -219 1515 173 8 4 chr13 110101067 110101322 -9643576 + MER7A DNA MER2_type 80 335 -1 188 250 16 0 chr13 110101512 110101576 -9643322 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 0 0 0 chr13 110105142 110105163 -9639735 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr13 110105705 110105747 -9639151 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr13 110106070 110106099 -9638799 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr13 110207463 110207496 -9537402 + AT_rich Low_complexity Low_complexity 1 33 0 203 282 39 39 chr13 110207628 110207706 -9537192 + MIR SINE MIR 121 198 -64 2069 283 82 33 chr13 110209078 110210012 -9534886 + L1MCb LINE L1 8 987 -5058 384 265 28 99 chr13 110210224 110210405 -9534493 + LTR41 LTR ERVL 459 626 -147 261 236 7 29 chr13 110210405 110210545 -9534353 + (TTATA)n Simple_repeat Simple_repeat 5 141 0 31 26 0 0 chr13 110210637 110210675 -9534223 + AT_rich Low_complexity Low_complexity 1 38 0 228 243 9 54 chr13 110210675 110210786 -9534112 + LTR41 LTR ERVL 662 767 -6 257 149 21 0 chr13 110210807 110210854 -9534044 + MLT1G LTR MaLR 524 571 -19 333 296 8 68 chr13 110211001 110211133 -9533765 + MIR SINE MIR 110 233 -29 21 36 0 0 chr13 110211137 110211165 -9533733 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 110211503 110211543 -9533355 + AT_rich Low_complexity Low_complexity 1 40 0 1176 87 24 10 chr13 110212011 110212296 -9532602 - THE1C LTR MaLR 0 375 1 234 0 0 0 chr13 110212594 110212620 -9532278 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 577 14 0 0 chr13 110212620 110212690 -9532208 - L1PA3 LINE L1 -7 6148 6079 474 308 20 63 chr13 110212892 110213129 -9531769 + MIR SINE MIR 4 233 -29 270 319 27 89 chr13 110213576 110213914 -9530984 - MLT1G1-int LTR MaLR -770 601 285 869 277 113 34 chr13 110214084 110214587 -9530311 - MLT1G1 LTR MaLR -37 518 2 256 289 67 114 chr13 110214770 110215041 -9529857 + MLT1B-int LTR MaLR 1029 1280 -91 1541 185 19 93 chr13 110215041 110215458 -9529440 + MLT1B LTR MaLR 5 390 0 256 289 67 114 chr13 110215458 110215546 -9529352 + MLT1B-int LTR MaLR 1280 1371 0 468 243 191 17 chr13 110215546 110215714 -9529184 + MLT1G1 LTR MaLR 1 198 -397 2439 104 0 0 chr13 110215714 110216041 -9528857 + THE1A LTR MaLR 1 327 -28 675 329 90 12 chr13 110216042 110216419 -9528479 + MLT1G1 LTR MaLR 116 595 0 207 0 0 0 chr13 110217164 110217187 -9527711 + (A)n Simple_repeat Simple_repeat 1 23 0 501 213 57 21 chr13 110219171 110219312 -9525586 + L2 LINE L2 3160 3305 -8 1283 190 13 51 chr13 110221115 110221426 -9523472 + AluJo SINE Alu 1 299 -3 21 0 0 0 chr13 110221722 110221743 -9523155 + AT_rich Low_complexity Low_complexity 1 21 0 454 153 0 0 chr13 110221887 110221972 -9522926 + L1MA2 LINE L1 6220 6304 0 577 201 0 50 chr13 110223270 110223409 -9521489 - MER20 DNA MER1_type -15 204 73 1889 183 23 9 chr13 110223463 110223813 -9521085 - MLT1A1 LTR MaLR 0 365 11 603 243 20 0 chr13 110227815 110227967 -9516931 + FRAM SINE Alu 19 173 -3 284 294 16 8 chr13 110229171 110229297 -9515601 + (TA)n Simple_repeat Simple_repeat 1 127 0 3885 166 37 4 chr13 110229502 110230622 -9514276 + L1MA4 LINE L1 4795 5952 -348 1849 173 34 28 chr13 110230622 110230974 -9513924 - THE1B LTR MaLR 0 364 11 1567 188 20 14 chr13 110230979 110231324 -9513574 + L1MA4 LINE L1 5948 6294 -6 22 35 0 0 chr13 110231348 110231377 -9513521 + AT_rich Low_complexity Low_complexity 1 29 0 213 346 13 0 chr13 110233280 110233358 -9511540 + L2 LINE L2 3186 3264 -8 1423 201 57 23 chr13 110234165 110234518 -9510380 - MLT1A1 LTR MaLR 0 365 1 470 258 138 6 chr13 110235814 110235973 -9508925 + MIR SINE MIR 41 220 -42 202 305 61 0 chr13 110236293 110236375 -9508523 + L2 LINE L2 3219 3305 -8 251 174 14 29 chr13 110237843 110237912 -9506986 + (AATTG)n Simple_repeat Simple_repeat 3 70 0 196 350 108 8 chr13 110238542 110238662 -9506236 - MIR SINE MIR -33 229 98 218 280 34 127 chr13 110239098 110239216 -9505682 + L2 LINE L2 3205 3311 -2 23 54 0 0 chr13 110241189 110241226 -9503672 + AT_rich Low_complexity Low_complexity 1 37 0 784 260 18 24 chr13 110241856 110242305 -9502593 - MLT1D LTR MaLR -2 503 1 203 186 23 0 chr13 110243529 110243572 -9501326 + L2 LINE L2 3261 3304 -9 446 303 7 7 chr13 110247049 110247194 -9497704 - MLT1I LTR MaLR 0 409 265 297 225 54 47 chr13 110247461 110247590 -9497308 - MER97b DNA MER1_type? -1 1052 923 2377 236 59 64 chr13 110247809 110248011 -9496887 - MER97b DNA MER1_type? -195 858 657 2586 90 29 0 chr13 110248011 110248388 -9496510 + L1PA8 LINE L1 5783 6170 -2 2377 236 59 64 chr13 110248388 110249047 -9495851 - MER97b DNA MER1_type? -396 657 1 269 363 72 60 chr13 110249325 110249658 -9495240 - L2 LINE L2 -3 3269 2933 287 346 91 38 chr13 110249712 110249975 -9494923 - L2 LINE L2 -439 2875 2599 204 159 23 0 chr13 110250020 110250064 -9494834 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 250 323 49 43 chr13 110250090 110250254 -9494644 - L2 LINE L2 -923 2391 2227 29 0 0 0 chr13 110250811 110250840 -9494058 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr13 110250870 110250924 -9493974 + AT_rich Low_complexity Low_complexity 1 54 0 1538 192 17 7 chr13 110252206 110252533 -9492365 + AluJb SINE Alu 13 312 0 733 281 36 27 chr13 110252875 110253096 -9491802 + MER58A DNA MER1_type 1 223 -1 31 68 0 0 chr13 110253912 110253971 -9490927 + AT_rich Low_complexity Low_complexity 1 59 0 197 241 52 17 chr13 110254218 110254276 -9490622 + L2 LINE L2 3248 3307 -6 1984 130 17 10 chr13 110254641 110254941 -9489957 + AluSg SINE Alu 1 302 -8 408 229 0 38 chr13 110255725 110255830 -9489068 - MER5A DNA MER1_type -85 104 4 1858 115 0 0 chr13 110256486 110256739 -9488159 + AluSq SINE Alu 1 253 -60 2078 191 43 75 chr13 110257034 110257568 -9487330 + Tigger1 DNA MER2_type 2 518 -1900 * 9176 147 37 1 chr13 110257566 110259092 -9485806 + Tigger1 DNA MER2_type 838 2418 0 2140 140 14 6 chr13 110259203 110259552 -9485346 + THE1A LTR MaLR 4 355 0 333 0 0 0 chr13 110259672 110259709 -9485189 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr13 110259772 110259793 -9485105 + AT_rich Low_complexity Low_complexity 1 21 0 241 294 50 67 chr13 110262524 110262643 -9482255 + L2 LINE L2 3151 3267 -5 252 186 0 0 chr13 110263633 110263692 -9481206 + A-rich Low_complexity Low_complexity 1 59 0 252 0 0 0 chr13 110265053 110265081 -9479817 + (CA)n Simple_repeat Simple_repeat 2 29 0 255 61 0 0 chr13 110266514 110266547 -9478351 + (T)n Simple_repeat Simple_repeat 1 33 0 421 281 50 31 chr13 110266917 110267077 -9477821 + MIR SINE MIR 100 262 0 286 156 50 50 chr13 110267199 110267340 -9477558 + (TATAA)n Simple_repeat Simple_repeat 3 143 0 356 140 43 0 chr13 110267342 110267435 -9477463 + (TA)n Simple_repeat Simple_repeat 1 97 0 220 317 117 8 chr13 110268412 110268532 -9476366 - MIR SINE MIR -3 259 127 306 50 0 0 chr13 110268668 110268708 -9476190 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1689 34 0 0 chr13 110268708 110268912 -9475986 - L1PA4 LINE L1 -24 6131 5928 587 63 7 0 chr13 110268908 110268992 -9475906 + L1P1 LINE L1 5741 5828 -293 * 468 319 63 21 chr13 110269002 110269240 -9475658 - MIR SINE MIR -5 257 10 24 32 0 0 chr13 110270505 110270536 -9474362 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 110270589 110270618 -9474280 + AT_rich Low_complexity Low_complexity 1 29 0 5338 179 40 17 chr13 110271225 110271300 -9473598 + L1MA8 LINE L1 4094 4166 -2125 1919 128 0 3 chr13 110271300 110271582 -9473316 + AluSc SINE Alu 1 281 -28 5338 179 40 17 chr13 110271582 110272371 -9472527 + L1MA8 LINE L1 4166 4935 -1356 2305 102 3 9 chr13 110272371 110272686 -9472212 + AluSq SINE Alu 1 313 0 5338 179 40 17 chr13 110272686 110273958 -9470940 + L1MA8 LINE L1 4935 6288 -3 2790 186 63 32 chr13 110274002 110274664 -9470234 + L1MB8 LINE L1 5490 6172 -6 24 32 0 0 chr13 110276235 110276266 -9468632 + AT_rich Low_complexity Low_complexity 1 31 0 280 296 53 8 chr13 110276329 110276461 -9468437 + L1ME LINE L1 5543 5680 -441 265 349 66 20 chr13 110277131 110277283 -9467615 + MLT1J LTR MaLR 246 404 -107 22 0 0 0 chr13 110278646 110278668 -9466230 + AT_rich Low_complexity Low_complexity 1 22 0 1330 166 146 4 chr13 110278668 110278804 -9466094 - AluJb SINE Alu -13 289 174 180 77 0 0 chr13 110278804 110278830 -9466068 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1330 166 146 4 chr13 110278830 110278946 -9465952 - AluJb SINE Alu -128 174 1 905 286 105 48 chr13 110279297 110279793 -9465105 - L3 LINE CR1 -174 1403 880 23 0 0 0 chr13 110280370 110280393 -9464505 + AT_rich Low_complexity Low_complexity 1 23 0 1879 149 174 14 chr13 110280754 110281122 -9463776 - MSTA LTR MaLR 0 428 2 6447 52 137 19 chr13 110282608 110282963 -9461935 - L1P LINE L1 -5090 1056 744 2572 30 3 0 chr13 110282963 110283263 -9461635 - AluY SINE Alu -10 301 1 6447 52 137 19 chr13 110283263 110283849 -9461049 - L1P LINE L1 -5402 744 4 35531 32 2 0 chr13 110283849 110288943 -9455955 + L1PA3 LINE L1 1049 6154 -1 24 67 0 0 chr13 110289038 110289083 -9455815 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 110290321 110290342 -9454556 + AT_rich Low_complexity Low_complexity 1 21 0 340 366 6 37 chr13 110290427 110290591 -9454307 - MER5B DNA MER1_type -16 162 4 384 312 58 32 chr13 110292701 110292890 -9452008 + ERVL LTR ERVL 1772 1965 -3799 1589 251 43 0 chr13 110293069 110293124 -9451774 + MER97b DNA MER1_type? 184 235 -818 408 97 0 0 chr13 110293124 110293186 -9451712 + (TA)n Simple_repeat Simple_repeat 1 62 0 1589 251 43 0 chr13 110293186 110293521 -9451377 + MER97b DNA MER1_type? 235 591 -462 4319 199 56 2 chr13 110293853 110294728 -9450170 - ERVL LTR ERVL -1007 4757 3836 2790 185 26 4 chr13 110295623 110296121 -9448777 + Tigger7 DNA MER2_type 2 510 -223 547 144 19 48 chr13 110296113 110296217 -9448681 + Tigger7 DNA MER2_type 2487 2587 0 * 313 272 0 22 chr13 110296235 110296327 -9448571 - L1MC4 LINE L1 -1339 6703 6614 184 30 61 0 chr13 110296488 110296521 -9448377 + (TTG)n Simple_repeat Simple_repeat 2 36 0 301 286 92 0 chr13 110296663 110296782 -9448116 + MER94 DNA DNA 5 134 0 431 274 57 16 chr13 110297125 110297249 -9447649 - MIR SINE MIR -121 141 13 226 244 158 12 chr13 110297317 110297399 -9447499 + LTR67 LTR ERVL 460 553 -4 2014 128 0 7 chr13 110297514 110297810 -9447088 + AluSc SINE Alu 3 296 -13 328 362 112 4 chr13 110298347 110298579 -9446319 - MIR SINE MIR -1 261 5 402 327 55 27 chr13 110298796 110299016 -9445882 - MIR SINE MIR -35 227 2 1570 117 25 172 chr13 110299927 110300155 -9444743 - THE1C LTR MaLR -2 373 238 1969 135 0 0 chr13 110300155 110300444 -9444454 + AluY SINE Alu 1 289 -22 1570 117 25 172 chr13 110300444 110300651 -9444247 - THE1C LTR MaLR -137 238 2 206 292 22 56 chr13 110300714 110300803 -9444095 - L2 LINE L2 -18 3254 3169 191 245 0 75 chr13 110300886 110300939 -9443959 - MER5A DNA MER1_type -124 65 17 30 27 0 0 chr13 110301893 110301930 -9442968 + AT_rich Low_complexity Low_complexity 1 37 0 4354 192 44 12 chr13 110302044 110303030 -9441868 - L1MA8 LINE L1 -3 6288 5272 26 0 0 0 chr13 110304165 110304191 -9440707 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 110304576 110304598 -9440300 + AT_rich Low_complexity Low_complexity 1 22 0 198 171 0 0 chr13 110305140 110305181 -9439717 + GA-rich Low_complexity Low_complexity 3 43 0 23 78 0 0 chr13 110305830 110305881 -9439017 + AT_rich Low_complexity Low_complexity 1 51 0 29 60 0 0 chr13 110306037 110306087 -9438811 + AT_rich Low_complexity Low_complexity 1 50 0 369 311 141 10 chr13 110306210 110306416 -9438482 + MIR SINE MIR 30 262 0 30 0 0 0 chr13 110306508 110306538 -9438360 + AT_rich Low_complexity Low_complexity 1 30 0 30 77 0 0 chr13 110307108 110307173 -9437725 + AT_rich Low_complexity Low_complexity 1 65 0 27 29 0 0 chr13 110308589 110308623 -9436275 + AT_rich Low_complexity Low_complexity 1 34 0 4118 36 0 2 chr13 110308884 110309383 -9435515 - L1PA3 LINE L1 -1 6154 5657 22 0 0 0 chr13 110309617 110309639 -9435259 + AT_rich Low_complexity Low_complexity 1 22 0 4171 229 74 51 chr13 110310694 110310801 -9434097 + Charlie1a DNA MER1_type 1 104 -2657 1968 92 3 31 chr13 110310801 110311094 -9433804 + AluY SINE Alu 15 299 -12 4171 229 74 51 chr13 110311094 110311954 -9432944 + Charlie1a DNA MER1_type 104 1014 -1747 212 0 36 0 chr13 110311954 110311982 -9432916 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 4171 229 74 51 chr13 110311982 110312435 -9432463 + Charlie1a DNA MER1_type 1014 1455 0 256 344 11 0 chr13 110312454 110312544 -9432354 + L2 LINE L2 3223 3313 0 3261 186 62 33 chr13 110312677 110313159 -9431739 - L1MB7 LINE L1 -9 6175 5709 1847 162 39 41 chr13 110313159 110313523 -9431375 + THE1B LTR MaLR 2 364 0 3261 186 62 33 chr13 110313523 110314270 -9430628 - L1MB7 LINE L1 -475 5709 4915 195 42 0 0 chr13 110314351 110314375 -9430523 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 252 318 69 23 chr13 110314575 110314748 -9430150 + ERVL LTR ERVL 3020 3200 -2564 261 260 39 109 chr13 110315129 110315272 -9429626 - MIR SINE MIR -72 136 1 25 0 0 0 chr13 110315647 110315672 -9429226 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr13 110315742 110315778 -9429120 + AT_rich Low_complexity Low_complexity 1 36 0 304 230 141 22 chr13 110317620 110317755 -9427143 - L1ME3 LINE L1 -94 6068 5918 229 244 0 0 chr13 110318390 110318435 -9426463 + (TA)n Simple_repeat Simple_repeat 2 46 0 2776 98 12 0 chr13 110319607 110320006 -9424892 - L1PA10 LINE L1 -487 5681 5278 * 3352 86 13 0 chr13 110320003 110320474 -9424424 + L1PA10 LINE L1 5678 6157 -11 196 283 0 19 chr13 110320702 110320755 -9424143 - L2 LINE L2 -213 3059 3008 4865 174 46 17 chr13 110322093 110323590 -9421308 + L1PB3 LINE L1 4256 5812 -342 2142 121 0 13 chr13 110323590 110323904 -9420994 + AluSg SINE Alu 1 310 0 4865 174 46 17 chr13 110323904 110324258 -9420640 + L1PB3 LINE L1 5812 6154 0 22 35 0 0 chr13 110324258 110324287 -9420611 + AT_rich Low_complexity Low_complexity 1 29 0 391 321 36 7 chr13 110324820 110324957 -9419941 + MIR SINE MIR 57 197 -65 2920 93 58 5 chr13 110324997 110325039 -9419859 - MLT2A2 LTR ERVL 0 453 415 387 0 0 0 chr13 110325039 110325082 -9419816 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2920 93 58 5 chr13 110325082 110325469 -9419429 - MLT2A2 LTR ERVL -38 415 1 534 220 45 53 chr13 110326546 110326678 -9418220 - FLAM_C SINE Alu -12 131 1 261 119 0 0 chr13 110326683 110326725 -9418173 + (T)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr13 110326958 110326982 -9417916 + AT_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr13 110327343 110327372 -9417526 + (TC)n Simple_repeat Simple_repeat 2 30 0 27 0 0 0 chr13 110327396 110327423 -9417475 + AT_rich Low_complexity Low_complexity 1 27 0 215 219 0 0 chr13 110327931 110327972 -9416926 + (TATG)n Simple_repeat Simple_repeat 4 44 0 21 36 0 0 chr13 110328147 110328175 -9416723 + AT_rich Low_complexity Low_complexity 1 28 0 1612 177 25 0 chr13 110328489 110328771 -9416127 + AluSx SINE Alu 3 291 -21 225 94 0 0 chr13 110328855 110328887 -9416011 + (TG)n Simple_repeat Simple_repeat 1 32 0 204 309 208 11 chr13 110329004 110329182 -9415716 + MIR SINE MIR 42 254 -8 225 83 0 0 chr13 110329700 110329736 -9415162 + (A)n Simple_repeat Simple_repeat 1 36 0 23 54 0 0 chr13 110329832 110329869 -9415029 + AT_rich Low_complexity Low_complexity 1 37 0 2218 69 3 20 chr13 110330674 110330978 -9413920 - AluSc SINE Alu -10 299 1 24 67 0 0 chr13 110331139 110331184 -9413714 + AT_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr13 110331364 110331405 -9413493 + AT_rich Low_complexity Low_complexity 1 41 0 1792 136 0 18 chr13 110331476 110331749 -9413149 - AluSx SINE Alu -44 268 1 24 67 0 0 chr13 110334317 110334362 -9410536 + AT_rich Low_complexity Low_complexity 1 45 0 1406 239 7 4 chr13 110334427 110334707 -9410191 - AluJo SINE Alu -19 283 3 21 0 0 0 chr13 110334709 110334730 -9410168 + AT_rich Low_complexity Low_complexity 1 21 0 188 339 77 0 chr13 110335756 110335821 -9409077 - MIR SINE MIR -88 120 51 28 0 0 0 chr13 110335943 110335971 -9408927 + AT_rich Low_complexity Low_complexity 1 28 0 2125 119 3 16 chr13 110336793 110337103 -9407795 + AluSg SINE Alu 1 306 -4 200 59 29 0 chr13 110338210 110338244 -9406654 + (CA)n Simple_repeat Simple_repeat 1 35 0 295 388 27 7 chr13 110338746 110338893 -9406005 - L2 LINE L2 -229 3043 2894 470 242 65 16 chr13 110339083 110339207 -9405691 + MER5A DNA MER1_type 37 166 -23 198 0 0 0 chr13 110339490 110339512 -9405386 + (TG)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chr13 110339952 110339982 -9404916 + (CA)n Simple_repeat Simple_repeat 2 31 0 1045 154 74 6 chr13 110340182 110340357 -9404541 + AluJb SINE Alu 99 285 -27 24 32 0 0 chr13 110340473 110340504 -9404394 + AT_rich Low_complexity Low_complexity 1 31 0 246 180 0 40 chr13 110340944 110340994 -9403904 + (TAG)n Simple_repeat Simple_repeat 2 49 0 265 317 113 22 chr13 110341007 110341237 -9403661 + L1 LINE L1 4783 5033 -1113 1879 156 0 0 chr13 110344331 110344636 -9400262 + AluSx SINE Alu 13 312 0 262 252 89 32 chr13 110344830 110344953 -9399945 + MARNA DNA Mariner 400 529 -57 2323 63 0 10 chr13 110345594 110345895 -9399003 - AluY SINE Alu -13 298 1 728 271 16 0 chr13 110347241 110347433 -9397465 - MER77 LTR ERV1 0 605 411 1927 97 30 0 chr13 110347767 110348036 -9396862 - AluY SINE Alu -24 287 11 225 204 0 0 chr13 110348150 110348194 -9396704 + A-rich Low_complexity Low_complexity 1 44 0 479 303 137 30 chr13 110348678 110349240 -9395658 - Charlie7 DNA MER1_type -107 2505 1884 275 338 44 15 chr13 110349425 110349561 -9395337 - MIR SINE MIR 0 262 123 299 292 53 9 chr13 110349844 110349957 -9394941 - L2 LINE L2 -9 3304 3187 898 288 58 6 chr13 110349972 110350299 -9394599 - Charlie7 DNA MER1_type -1522 1090 747 1413 189 54 9 chr13 110350334 110350651 -9394247 - L1MC3 LINE L1 -580 7205 6875 2333 97 0 0 chr13 110352194 110352493 -9392405 - AluSq SINE Alu -9 304 6 201 74 0 0 chr13 110354152 110354179 -9390719 + (T)n Simple_repeat Simple_repeat 1 27 0 3465 208 20 4 chr13 110354568 110355326 -9389572 - L1 LINE L1 -964 5182 4413 2313 76 3 3 chr13 110355327 110355629 -9389269 - AluY SINE Alu -9 302 1 207 0 0 0 chr13 110355631 110355654 -9389244 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 5602 135 17 61 chr13 110355678 110355778 -9389120 + L1MA4A LINE L1 5200 5303 -1000 293 0 27 0 chr13 110355778 110355815 -9389083 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5602 135 17 61 chr13 110355815 110356596 -9388302 + L1MA4A LINE L1 5303 6047 -256 2091 124 10 10 chr13 110356596 110356903 -9387995 - AluSq SINE Alu -6 307 1 5602 135 17 61 chr13 110356903 110357146 -9387752 + L1MA4A LINE L1 6047 6299 -4 2082 116 23 7 chr13 110357176 110357479 -9387419 + AluY SINE Alu 1 308 -3 2196 96 33 3 chr13 110357643 110357945 -9386953 - AluSq SINE Alu 0 313 3 324 267 16 105 chr13 110359339 110359530 -9385368 + L2 LINE L2 3118 3291 -22 195 207 172 17 chr13 110360260 110360318 -9384580 + MIR SINE MIR 81 147 -115 258 32 0 0 chr13 110363681 110363712 -9381186 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 397 14 0 chr13 110364290 110364363 -9380535 + L2 LINE L2 2412 2485 -829 270 388 25 0 chr13 110364608 110364729 -9380169 - MER5B DNA MER1_type -7 171 48 273 250 15 29 chr13 110364768 110364836 -9380062 + L2 LINE L2 3206 3272 0 487 319 37 21 chr13 110364918 110365109 -9379789 + L2 LINE L2 3120 3313 0 823 181 101 16 chr13 110365354 110365542 -9379356 + MER3 DNA MER1_type 6 209 0 572 274 227 38 chr13 110366717 110367192 -9377706 - MLT1G LTR MaLR 0 590 26 297 327 123 18 chr13 110367369 110367589 -9377309 + MIR SINE MIR 20 262 0 553 133 177 0 chr13 110368182 110368295 -9376603 - FLAM_C SINE Alu 0 133 1 1522 225 58 44 chr13 110368428 110368926 -9375972 - MLT1D LTR MaLR 0 505 1 29 47 0 0 chr13 110371181 110371224 -9373674 + AT_rich Low_complexity Low_complexity 1 43 0 2032 117 0 46 chr13 110371192 110371377 -9373521 - AluSx SINE Alu -1 311 146 2309 81 13 0 chr13 110371377 110371684 -9373214 - AluY SINE Alu 0 311 1 2032 117 0 46 chr13 110371684 110371824 -9373074 - AluSx SINE Alu -166 146 1 414 192 78 3 chr13 110372184 110372295 -9372603 - LTR37A LTR ERV1 -24 444 285 310 261 77 8 chr13 110372346 110372476 -9372422 - LTR37A LTR ERV1 -242 184 46 207 372 97 35 chr13 110373491 110373636 -9371262 - MER5A DNA MER1_type 0 189 36 255 31 0 0 chr13 110373753 110373785 -9371113 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr13 110374061 110374082 -9370816 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 110374731 110374767 -9370131 + AT_rich Low_complexity Low_complexity 1 36 0 204 158 0 0 chr13 110374944 110374982 -9369916 + (TG)n Simple_repeat Simple_repeat 2 39 0 212 393 52 0 chr13 110375643 110375778 -9369120 - MIR3 SINE MIR -65 143 2 21 0 0 0 chr13 110377099 110377120 -9367778 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 110377206 110377227 -9367671 + AT_rich Low_complexity Low_complexity 1 21 0 1310 225 19 0 chr13 110378046 110378313 -9366585 + AluJb SINE Alu 3 274 -38 24 0 0 0 chr13 110379304 110379328 -9365570 + AT_rich Low_complexity Low_complexity 1 24 0 214 297 88 0 chr13 110379368 110379459 -9365439 + L2 LINE L2 3187 3285 -28 280 314 12 12 chr13 110379588 110379674 -9365224 - L2 LINE L2 0 3272 3187 1669 214 95 21 chr13 110379960 110380390 -9364508 - MLT1C LTR MaLR 0 467 6 1887 181 139 38 chr13 110381040 110381075 -9363823 - MLT2B3 LTR ERVL 0 554 524 601 64 32 0 chr13 110381075 110381169 -9363729 + (TAGA)n Simple_repeat Simple_repeat 3 99 0 1887 181 139 38 chr13 110381169 110381636 -9363262 - MLT2B3 LTR ERVL -30 524 1 275 303 96 37 chr13 110381854 110382042 -9362856 - MIR SINE MIR -63 199 1 317 330 192 33 chr13 110382042 110382478 -9362420 + L2 LINE L2 1293 1658 -1656 2352 106 51 11 chr13 110382478 110382828 -9362070 - THE1B LTR MaLR 0 364 1 317 330 192 33 chr13 110382828 110383084 -9361814 + L2 LINE L2 1658 2095 -1219 2108 124 7 0 chr13 110383104 110383403 -9361495 - AluSg SINE Alu -9 301 1 478 256 51 40 chr13 110383448 110383641 -9361257 - L1MA10 LINE L1 0 6334 5985 * 2599 253 85 40 chr13 110383637 110385487 -9359411 - L1MD2 LINE L1 -346 6082 4134 295 267 8 53 chr13 110385530 110385661 -9359237 - L1MD2 LINE L1 -6231 165 41 612 340 79 12 chr13 110385741 110386070 -9358828 + L2 LINE L2 2188 2538 -776 1433 244 70 29 chr13 110386132 110386574 -9358324 + MLT1C LTR MaLR 1 460 -7 235 353 142 22 chr13 110386578 110386938 -9357960 + L2 LINE L2 2575 2977 -337 2073 120 0 3 chr13 110387203 110387517 -9357381 - AluSq SINE Alu 0 313 1 192 77 0 0 chr13 110388175 110388201 -9356697 + (A)n Simple_repeat Simple_repeat 1 26 0 293 342 39 61 chr13 110389526 110389757 -9355141 - L2 LINE L2 -31 3241 3016 580 278 25 6 chr13 110389820 110389982 -9354916 + MIR SINE MIR 3 167 -95 1134 256 75 67 chr13 110390300 110390781 -9354117 + MLT1E LTR MaLR 1 485 -108 44 46 0 0 chr13 110390798 110390863 -9354035 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr13 110391453 110391474 -9353424 + AT_rich Low_complexity Low_complexity 1 21 0 213 60 40 80 chr13 110392337 110392387 -9352511 + (TTTTTG)n Simple_repeat Simple_repeat 5 52 0 210 288 25 25 chr13 110392997 110393115 -9351783 + (TATATG)n Simple_repeat Simple_repeat 2 119 0 22 56 0 0 chr13 110393570 110393606 -9351292 + AT_rich Low_complexity Low_complexity 1 36 0 1761 147 0 4 chr13 110393721 110393993 -9350905 + AluSx SINE Alu 3 273 -39 207 0 0 0 chr13 110393998 110394021 -9350877 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 243 88 0 0 chr13 110394020 110394054 -9350844 + (TA)n Simple_repeat Simple_repeat 1 34 0 225 338 106 12 chr13 110394820 110394980 -9349918 + MIR SINE MIR 80 254 -8 21 0 0 0 chr13 110395092 110395113 -9349785 + AT_rich Low_complexity Low_complexity 1 21 0 411 21 0 0 chr13 110396359 110396407 -9348491 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 25 31 0 0 chr13 110399370 110399402 -9345496 + AT_rich Low_complexity Low_complexity 1 32 0 28 71 0 0 chr13 110401382 110401438 -9343460 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr13 110403162 110403192 -9341706 + AT_rich Low_complexity Low_complexity 1 30 0 637 258 67 34 chr13 110403938 110404147 -9340751 - MIR SINE MIR -2 260 45 640 219 8 0 chr13 110404182 110404310 -9340588 + MER5A DNA MER1_type 1 129 -60 1735 75 50 0 chr13 110405774 110406015 -9338883 - MLT2A2 LTR ERVL 0 453 201 2704 129 21 0 chr13 110406016 110406436 -9338462 - MER57B LTR ERV1 0 434 6 1168 118 41 5 chr13 110406441 110406636 -9338262 - MLT2A2 LTR ERVL -250 203 2 22 0 0 0 chr13 110406640 110406662 -9338236 + AT_rich Low_complexity Low_complexity 1 22 0 528 257 22 7 chr13 110406861 110406997 -9337901 + MER5B DNA MER1_type 1 138 -40 496 230 182 0 chr13 110407087 110407235 -9337663 - MER5A DNA MER1_type 0 189 15 281 339 21 11 chr13 110407906 110408025 -9336873 + MIR SINE MIR 32 154 -61 702 167 8 16 chr13 110408916 110409042 -9335856 - L1MB1 LINE L1 -237 5952 5828 828 202 16 26 chr13 110409042 110409217 -9335681 + L1MB1 LINE L1 5975 6165 -3 295 292 94 41 chr13 110409836 110410007 -9334891 + LTR67 LTR ERVL 367 546 -11 186 111 83 0 chr13 110410220 110410256 -9334642 + MIR SINE MIR 213 251 -11 35 0 0 0 chr13 110411857 110411892 -9333006 + AT_rich Low_complexity Low_complexity 1 35 0 1921 97 54 37 chr13 110413172 110413470 -9331428 - AluSx SINE Alu -7 305 3 2276 107 3 0 chr13 110415705 110416014 -9328884 - AluSq SINE Alu -3 310 1 1242 191 122 43 chr13 110416243 110416588 -9328310 + MLT1C LTR MaLR 42 413 -54 201 39 0 0 chr13 110417129 110417155 -9327743 + (GA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr13 110417905 110417928 -9326970 + AT_rich Low_complexity Low_complexity 1 23 0 304 311 68 8 chr13 110418495 110418627 -9326271 - L2 LINE L2 -508 2806 2667 1132 149 11 0 chr13 110418635 110418797 -9326101 - MER4B LTR ERV1 0 610 447 1949 121 112 0 chr13 110418797 110419110 -9325788 - THE1C LTR MaLR 0 375 28 340 268 151 4 chr13 110419118 110419383 -9325515 - L1MEc LINE L1 -3037 3092 2789 412 74 88 7 chr13 110419522 110419670 -9325228 + (TA)n Simple_repeat Simple_repeat 1 160 0 423 143 0 153 chr13 110419723 110419821 -9325077 + MSTB LTR MaLR 3 85 -341 2946 84 51 0 chr13 110419821 110420250 -9324648 + L1PB1 LINE L1 5341 5791 -360 604 113 11 48 chr13 110420250 110420436 -9324462 + (TA)n Simple_repeat Simple_repeat 2 180 0 2545 87 3 11 chr13 110420447 110420803 -9324095 + L1PB1 LINE L1 5799 6151 0 3208 156 16 16 chr13 110420859 110421404 -9323494 - MER4D LTR ERV1 -327 545 1 357 293 208 19 chr13 110421441 110421653 -9323245 - L1ME LINE L1 -344 5777 5526 227 341 0 12 chr13 110421712 110421797 -9323101 + LTR33 LTR ERVL 429 512 -9 2700 19 0 6 chr13 110422397 110422709 -9322189 - AluY SINE Alu -1 310 1 315 306 36 51 chr13 110422729 110423062 -9321836 - L1MEc LINE L1 -4790 1520 1193 498 304 96 69 chr13 110423065 110423598 -9321300 - L1MEc LINE L1 -4974 1145 599 306 297 97 32 chr13 110424057 110424212 -9320686 - L1MEc LINE L1 -5949 170 6 2236 113 0 3 chr13 110425446 110425746 -9319152 - AluSx SINE Alu -13 299 1 284 226 11 75 chr13 110426089 110426182 -9318716 - MLT1J1 LTR MaLR -324 122 36 859 281 61 43 chr13 110426395 110426740 -9318158 - MLT1E2 LTR MaLR -275 351 1 318 306 0 0 chr13 110426837 110426922 -9317976 - MER94 DNA DNA 0 134 50 312 331 120 5 chr13 110428736 110428920 -9315978 - MIR SINE MIR 0 262 58 193 356 26 26 chr13 110428950 110429065 -9315833 - MIR SINE MIR -128 134 20 1138 302 18 36 chr13 110429284 110429671 -9315227 - MLT1H1 LTR MaLR -173 382 3 208 139 0 0 chr13 110429771 110429807 -9315091 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1304 239 83 46 chr13 110429848 110430563 -9314335 + L1ME2 LINE L1 4738 5478 -684 1433 252 42 59 chr13 110430605 110431078 -9313820 + LTR40c LTR ERVL 1 465 0 291 304 68 0 chr13 110431078 110431226 -9313672 + L1ME2 LINE L1 5556 5713 -453 349 229 73 99 chr13 110431228 110431420 -9313478 + L1ME2 LINE L1 5779 5965 -199 280 262 21 92 chr13 110431430 110431571 -9313327 - L2 LINE L2 -938 2376 2246 22 0 0 0 chr13 110431932 110431954 -9312944 + AT_rich Low_complexity Low_complexity 1 22 0 383 345 114 14 chr13 110432176 110432396 -9312502 - MLT1I LTR MaLR -14 395 154 236 373 152 31 chr13 110433518 110434124 -9310774 - L2 LINE L2 -556 2758 2080 244 246 16 107 chr13 110434279 110434401 -9310497 + MLT1L LTR MaLR 209 319 -296 660 240 88 6 chr13 110435002 110435173 -9309725 + MER58A DNA MER1_type 2 186 -38 2355 107 3 0 chr13 110435205 110435513 -9309385 - AluSg SINE Alu -1 309 1 2139 127 117 5 chr13 110435550 110435935 -9308963 + MSTA LTR MaLR 1 428 0 30 27 0 0 chr13 110436339 110436376 -9308522 + AT_rich Low_complexity Low_complexity 1 37 0 440 351 116 14 chr13 110436694 110436979 -9307919 + MLT1I LTR MaLR 42 355 -54 335 183 12 0 chr13 110437404 110437486 -9307412 + (TA)n Simple_repeat Simple_repeat 1 83 0 1823 150 4 0 chr13 110437486 110437766 -9307132 - AluSx SINE Alu -25 287 7 743 162 32 5 chr13 110437779 110437959 -9306939 - L1MA3 LINE L1 -102 6193 6032 310 110 0 137 chr13 110439624 110439697 -9305201 - L1PA10 LINE L1 0 6168 6106 378 121 0 0 chr13 110440413 110440479 -9304419 + (CA)n Simple_repeat Simple_repeat 1 66 0 224 397 43 7 chr13 110441471 110441612 -9303286 + MIR3 SINE MIR 54 199 -9 418 364 73 39 chr13 110441778 110442339 -9302559 + L2 LINE L2 2048 2627 -687 38 39 0 0 chr13 110444963 110445015 -9299883 + AT_rich Low_complexity Low_complexity 1 52 0 1373 136 45 133 chr13 110445500 110445831 -9299067 + AluJo SINE Alu 10 311 -1 1937 154 3 3 chr13 110447244 110447549 -9297349 - AluSx SINE Alu -7 305 1 28 0 0 0 chr13 110448109 110448137 -9296761 + AT_rich Low_complexity Low_complexity 1 28 0 901 192 0 0 chr13 110452006 110452157 -9292741 + FRAM SINE Alu 6 156 -20 23 0 0 0 chr13 110452157 110452180 -9292718 + AT_rich Low_complexity Low_complexity 1 23 0 330 263 0 0 chr13 110452574 110452654 -9292244 - L1MC4 LINE L1 -1 8041 7962 636 264 131 17 chr13 110452955 110453360 -9291538 - L1MC4 LINE L1 -217 7825 7375 286 253 0 22 chr13 110454298 110454389 -9290509 - HAL1 LINE L1 -916 1591 1503 571 269 66 22 chr13 110454400 110454627 -9290271 + L1MCc LINE L1 17 253 -6170 275 300 31 31 chr13 110454631 110454761 -9290137 + MLT1H LTR MaLR 108 237 -312 2891 130 7 0 chr13 110454821 110455252 -9289646 - MER57B LTR ERV1 0 434 1 239 208 42 14 chr13 110455255 110455327 -9289571 + MER116 DNA Mariner 7 80 0 2219 104 17 0 chr13 110455597 110455895 -9289003 - AluSc SINE Alu -6 303 1 1864 171 29 29 chr13 110456875 110457250 -9287648 + THE1C LTR MaLR 1 375 0 189 239 83 73 chr13 110458048 110458157 -9286741 - L2 LINE L2 -2473 841 732 466 302 68 44 chr13 110459045 110459250 -9285648 + MIR SINE MIR 13 222 -40 2107 173 16 56 chr13 110459394 110459844 -9285054 - Tigger2a DNA MER2_type 0 434 3 1373 242 46 12 chr13 110460781 110461107 -9283791 - MLT1A2 LTR MaLR -37 337 1 800 193 17 33 chr13 110461666 110461847 -9283051 - FRAM SINE Alu -2 174 1 22 35 0 0 chr13 110461938 110461967 -9282931 + AT_rich Low_complexity Low_complexity 1 29 0 514 292 52 56 chr13 110463128 110463173 -9281725 - MIR SINE MIR -4 258 214 2259 103 3 3 chr13 110463173 110463485 -9281413 - AluSq SINE Alu -1 312 1 514 292 52 56 chr13 110463485 110463689 -9281209 - MIR SINE MIR -48 214 10 585 313 39 0 chr13 110463690 110463872 -9281026 - MER5A DNA MER1_type 0 189 1 437 230 84 61 chr13 110465078 110465294 -9279604 + L1ME3 LINE L1 5930 6161 -9 195 170 0 0 chr13 110466336 110466383 -9278515 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1049 305 65 21 chr13 110467993 110468458 -9276440 - L2 LINE L2 0 3313 2829 557 328 223 15 chr13 110468469 110468927 -9275971 + L2 LINE L2 2412 2964 -350 2339 50 0 0 chr13 110469609 110469887 -9275011 + AluY SINE Alu 1 278 -33 218 32 32 0 chr13 110469894 110469925 -9274973 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr13 110470388 110470412 -9274486 + (TAA)n Simple_repeat Simple_repeat 2 25 0 222 336 19 56 chr13 110471726 110471833 -9273065 + L2 LINE L2 3186 3288 -25 21 0 0 0 chr13 110473017 110473038 -9271860 + AT_rich Low_complexity Low_complexity 1 21 0 444 258 13 52 chr13 110473254 110473409 -9271489 - MLT1F LTR MaLR -7 535 387 25 65 0 0 chr13 110473414 110473460 -9271438 + AT_rich Low_complexity Low_complexity 1 46 0 225 241 17 35 chr13 110474443 110474501 -9270397 - L2 LINE L2 0 3272 3216 244 160 0 0 chr13 110474525 110474575 -9270323 - L1MC4 LINE L1 -1334 6708 6659 2484 132 11 0 chr13 110474645 110475016 -9269882 + THE1C LTR MaLR 1 375 0 9364 126 37 42 chr13 110475016 110476603 -9268295 + THE1C-int LTR MaLR 1 1580 0 2627 104 8 8 chr13 110476603 110476978 -9267920 + THE1C LTR MaLR 1 375 0 1476 224 30 25 chr13 110477794 110478156 -9266742 - MLT1A1 LTR MaLR -1 364 1 2747 226 16 74 chr13 110478156 110478852 -9266046 - MLT1A1-int LTR MaLR 0 1735 1039 2694 255 22 18 chr13 110478927 110479606 -9265292 - MLT1A1-int LTR MaLR -907 828 147 23 0 0 0 chr13 110479708 110479731 -9265167 + AT_rich Low_complexity Low_complexity 1 23 0 266 212 81 71 chr13 110480244 110480343 -9264555 - MIR SINE MIR -81 181 82 733 228 36 36 chr13 110480822 110481015 -9263883 + MER63A DNA MER1_type 12 204 -6 536 281 85 67 chr13 110481181 110481676 -9263222 + MLT1H1 LTR MaLR 1 517 -38 205 152 0 0 chr13 110483451 110483484 -9261414 + A-rich Low_complexity Low_complexity 3 35 0 199 290 161 0 chr13 110484846 110484908 -9259990 - L2 LINE L2 -32 3281 3210 2167 107 0 7 chr13 110484908 110485235 -9259663 + AluSx SINE Alu 1 325 0 2174 57 0 0 chr13 110485245 110485507 -9259391 + AluY SINE Alu 37 298 -13 348 341 54 18 chr13 110485856 110486079 -9258819 + MIR SINE MIR 21 251 -11 2113 231 42 19 chr13 110486362 110486891 -9258007 - MER87 LTR ERV1 0 541 1 381 255 42 57 chr13 110487057 110487269 -9257629 + MLT1K LTR MaLR 374 582 -6 2221 64 0 0 chr13 110487329 110487632 -9257266 + L1PA7 LINE L1 5856 6158 0 1844 156 10 0 chr13 110487861 110488162 -9256736 + AluSx SINE Alu 1 304 -8 27 29 0 0 chr13 110489809 110489843 -9255055 + AT_rich Low_complexity Low_complexity 1 34 0 2179 112 3 16 chr13 110491183 110491497 -9253401 + AluSg SINE Alu 1 310 0 2782 94 41 25 chr13 110492984 110493028 -9251870 - MLT2A1 LTR ERVL 0 444 402 471 35 0 0 chr13 110493028 110493085 -9251813 + (TA)n Simple_repeat Simple_repeat 2 58 0 2782 94 41 25 chr13 110493085 110493477 -9251421 - MLT2A1 LTR ERVL -42 402 1 494 239 23 8 chr13 110493518 110493648 -9251250 + ORSL DNA AcHobo 141 272 -3 376 312 72 51 chr13 110493677 110493969 -9250929 + L2 LINE L2 2179 2476 -838 834 207 129 27 chr13 110494346 110494602 -9250296 + MLT1B LTR MaLR 1 282 -108 412 226 52 9 chr13 110494610 110494725 -9250173 - ORSL DNA AcHobo -15 260 141 634 73 32 0 chr13 110494766 110494860 -9250038 + MLT2A2 LTR ERVL 1 79 -374 260 211 19 0 chr13 110494860 110494912 -9249986 - MIR SINE MIR -115 147 95 650 313 24 95 chr13 110497032 110497144 -9247754 - L2 LINE L2 -1 3312 3194 1621 89 58 0 chr13 110497144 110497368 -9247530 - AluSg SINE Alu -73 237 1 650 313 24 95 chr13 110497368 110497667 -9247231 - L2 LINE L2 -119 3194 2930 224 224 15 60 chr13 110498002 110498069 -9246829 - MIR SINE MIR -79 183 120 343 260 94 0 chr13 110498239 110498366 -9246532 + MLT1H1 LTR MaLR 136 274 -281 240 233 0 0 chr13 110498428 110498471 -9246427 + MLT1H1 LTR MaLR 237 279 -276 1046 266 29 7 chr13 110498628 110498936 -9245962 + MLT1H1 LTR MaLR 237 551 -4 24 0 0 0 chr13 110499532 110499556 -9245342 + AT_rich Low_complexity Low_complexity 1 24 0 198 256 0 115 chr13 110499858 110499936 -9244962 + L3b LINE CR1 1109 1177 -406 186 43 0 0 chr13 110500243 110500266 -9244632 + (CAAGG)n Simple_repeat Simple_repeat 4 26 0 2189 167 61 0 chr13 110501399 110501806 -9243092 - MSTB1 LTR MaLR 0 432 1 667 174 55 0 chr13 110501853 110501962 -9242936 + AluSp SINE Alu 3 117 -196 195 42 0 0 chr13 110501964 110501988 -9242910 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 22 56 0 0 chr13 110502515 110502551 -9242347 + AT_rich Low_complexity Low_complexity 1 36 0 1377 127 0 47 chr13 110502808 110503020 -9241878 + AluSg/x SINE Alu 87 288 -24 22 0 0 0 chr13 110503020 110503042 -9241856 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 110504506 110504528 -9240370 + AT_rich Low_complexity Low_complexity 1 22 0 187 239 30 30 chr13 110504680 110504747 -9240151 - L2 LINE L2 0 3272 3206 697 231 0 0 chr13 110504752 110504895 -9240003 - MLT1A1 LTR MaLR -2 363 221 1217 217 21 35 chr13 110505024 110505314 -9239584 - MLT1A1 LTR MaLR -2 363 78 328 349 25 25 chr13 110505843 110506081 -9238817 - L1MC4a LINE L1 -1897 5911 5674 544 291 127 54 chr13 110506334 110506986 -9237912 - L1MEd LINE L1 -4890 1229 530 24 32 0 0 chr13 110507293 110507324 -9237574 + AT_rich Low_complexity Low_complexity 1 31 0 249 316 88 26 chr13 110507728 110507842 -9237056 + L2 LINE L2 3184 3304 -9 465 106 43 11 chr13 110508513 110508607 -9236291 + GA-rich Low_complexity Low_complexity 4 100 0 345 353 45 30 chr13 110510123 110510324 -9234574 - L3 LINE CR1 -19 1558 1355 1394 153 32 2 chr13 110511320 110511664 -9233234 - MSTA LTR MaLR 0 428 1 1833 171 56 51 chr13 110513239 110513589 -9231309 + MLT2D LTR ERVL 1 355 -59 225 0 0 0 chr13 110513589 110513614 -9231284 + (TG)n Simple_repeat Simple_repeat 2 26 0 1833 171 56 51 chr13 110513614 110513673 -9231225 + MLT2D LTR ERVL 355 412 -2 343 306 86 54 chr13 110513677 110513899 -9230999 - MIR SINE MIR -27 235 7 212 172 52 0 chr13 110514461 110514519 -9230379 + (TA)n Simple_repeat Simple_repeat 2 62 0 195 129 0 0 chr13 110514772 110514803 -9230095 + (TG)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr13 110514905 110514930 -9229968 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 319 0 22 chr13 110514965 110515056 -9229842 + (TG)n Simple_repeat Simple_repeat 2 90 0 26 0 0 0 chr13 110515568 110515594 -9229304 + AT_rich Low_complexity Low_complexity 1 26 0 252 268 16 24 chr13 110515612 110515735 -9229163 + L1MC4 LINE L1 7120 7241 -801 244 344 0 0 chr13 110515949 110516039 -9228859 + G-rich Low_complexity Low_complexity 1 90 0 271 263 86 20 chr13 110516304 110516502 -9228396 + L1MC4 LINE L1 7069 7279 -763 318 250 15 8 chr13 110516570 110516702 -9228196 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 598 255 29 90 chr13 110516707 110516985 -9227913 + L1MC4 LINE L1 7326 7586 -456 212 246 31 0 chr13 110517223 110517288 -9227610 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 284 167 33 117 chr13 110517300 110517420 -9227478 + L1MC4 LINE L1 7928 8037 -5 252 0 0 0 chr13 110519385 110519413 -9225485 + (TG)n Simple_repeat Simple_repeat 1 28 0 2186 100 0 4 chr13 110519413 110519694 -9225204 - AluSq SINE Alu -33 280 1 200 95 71 0 chr13 110520548 110520590 -9224308 + (TA)n Simple_repeat Simple_repeat 2 46 0 236 111 22 0 chr13 110520626 110520671 -9224227 + (TA)n Simple_repeat Simple_repeat 2 47 0 1477 102 41 0 chr13 110521110 110521307 -9223591 + AluSg SINE Alu 64 268 -42 198 0 0 0 chr13 110521321 110521343 -9223555 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1069 232 109 47 chr13 110521357 110521780 -9223118 - LTR40b LTR ERVL -10 452 4 714 224 73 0 chr13 110522078 110522243 -9222655 + MER20 DNA MER1_type 42 218 -1 262 294 64 118 chr13 110522524 110522728 -9222170 + MIR SINE MIR 20 212 -50 21 0 0 0 chr13 110526718 110526739 -9218159 + AT_rich Low_complexity Low_complexity 1 21 0 433 272 37 78 chr13 110526872 110527115 -9217783 + L3b LINE CR1 1341 1573 -10 487 234 70 0 chr13 110527150 110527278 -9217620 + L3b LINE CR1 1263 1399 -184 360 0 0 0 chr13 110528280 110528320 -9216578 + (CA)n Simple_repeat Simple_repeat 1 40 0 283 338 176 0 chr13 110528597 110528893 -9216005 - MLT1L LTR MaLR -261 354 7 1980 149 7 0 chr13 110530781 110531090 -9213808 - AluSx SINE Alu -1 311 1 340 307 48 32 chr13 110532188 110532504 -9212394 + L1ME LINE L1 1245 1565 -5069 261 246 16 0 chr13 110532505 110532566 -9212332 + GA-rich Low_complexity Low_complexity 4 65 0 1924 105 8 0 chr13 110532568 110532826 -9212072 + AluSx SINE Alu 18 277 -35 234 0 0 0 chr13 110532834 110532860 -9212038 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 342 267 81 27 chr13 110532866 110533129 -9211769 + L1ME LINE L1 1475 1897 -4903 2399 57 0 41 chr13 110533207 110533523 -9211375 + AluY SINE Alu 1 303 -8 248 208 0 19 chr13 110533643 110533696 -9211202 + L1M1 LINE L1 2963 3014 -4551 1491 258 40 45 chr13 110533763 110534504 -9210394 + L1M1 LINE L1 3858 4595 -2970 205 330 11 11 chr13 110536939 110537027 -9207871 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 1267 194 85 15 chr13 110537149 110537490 -9207408 + MLT1A1 LTR MaLR 1 365 0 524 253 60 39 chr13 110537599 110537781 -9207117 + MLT1I LTR MaLR 3 188 -221 368 226 8 0 chr13 110537919 110538043 -9206855 + (TGGA)n Simple_repeat Simple_repeat 4 128 0 22 0 0 0 chr13 110538057 110538079 -9206819 + AT_rich Low_complexity Low_complexity 1 22 0 297 267 252 0 chr13 110538376 110538511 -9206387 + MIR SINE MIR 84 252 -10 470 344 16 26 chr13 110539585 110539774 -9205124 - L3b LINE CR1 -275 1308 1122 571 269 121 6 chr13 110539896 110540078 -9204820 - MER63A DNA MER1_type -7 203 1 2003 186 78 0 chr13 110540196 110540593 -9204305 + MSTA LTR MaLR 1 428 0 27 62 0 0 chr13 110541496 110541544 -9203354 + AT_rich Low_complexity Low_complexity 1 48 0 1140 170 31 0 chr13 110541547 110541771 -9203127 - L1MA8 LINE L1 -29 6262 6032 241 323 50 31 chr13 110541789 110541950 -9202948 - HAL1 LINE L1 -1090 1417 1254 315 0 0 0 chr13 110542020 110542055 -9202843 + (TG)n Simple_repeat Simple_repeat 1 35 0 1734 226 68 7 chr13 110542285 110542727 -9202171 + MLT1D LTR MaLR 31 499 -6 2266 99 0 3 chr13 110543465 110543768 -9201130 - AluY SINE Alu -9 302 1 338 318 0 0 chr13 110543881 110543991 -9200907 + MER117 DNA MER1_type 55 164 -33 251 192 19 0 chr13 110545872 110545924 -9198974 - L1PA16 LINE L1 -9 6157 6105 194 91 30 0 chr13 110546069 110546102 -9198796 + CT-rich Low_complexity Low_complexity 4 37 0 181 360 47 0 chr13 110546595 110546681 -9198217 - MIR SINE MIR -77 131 42 308 270 9 36 chr13 110548613 110548724 -9196174 - MER94 DNA DNA -23 111 4 261 257 14 14 chr13 110548794 110548864 -9196034 - MER5A DNA MER1_type -11 178 109 3779 182 33 43 chr13 110548886 110549705 -9195193 + L1MB3 LINE L1 15 825 -5559 1466 162 47 5 chr13 110549701 110550024 -9194874 + L1MB3 LINE L1 1582 2013 -4371 * 4048 232 63 59 chr13 110550128 110551659 -9193239 + L1MB3 LINE L1 2985 4522 -1860 785 240 26 8 chr13 110551695 110551947 -9192951 + L1MB3 LINE L1 5012 5288 -1094 1884 161 48 23 chr13 110551950 110552347 -9192551 + L1MB3 LINE L1 6011 6417 -2 266 0 29 0 chr13 110552383 110552417 -9192481 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 465 324 71 13 chr13 110554001 110554226 -9190672 + MLT1I LTR MaLR 102 339 -70 362 293 179 49 chr13 110655518 110656042 -9088856 - L1MEd LINE L1 -867 1623 1057 330 80 0 0 chr13 110656766 110656816 -9088082 + (CA)n Simple_repeat Simple_repeat 2 51 0 185 333 80 80 chr13 110656839 110657001 -9087897 + L2 LINE L2 2996 3157 -115 36 40 0 0 chr13 110657315 110657365 -9087533 + AT_rich Low_complexity Low_complexity 1 50 0 480 88 0 0 chr13 110657478 110657546 -9087352 - AluY SINE Alu -13 299 232 1270 67 0 0 chr13 110657547 110657697 -9087201 - AluY SINE Alu -161 150 1 361 207 11 23 chr13 110657824 110657911 -9086987 + AluY SINE Alu 1 86 -214 1101 203 5 0 chr13 110658011 110658223 -9086675 + L1MC1 LINE L1 6103 6315 -18 27 81 0 0 chr13 110660206 110660268 -9084630 + AT_rich Low_complexity Low_complexity 1 62 0 1862 275 125 35 chr13 110660965 110661875 -9083023 + L2 LINE L2 1876 2867 -447 4893 132 1 4 chr13 110663033 110663769 -9081129 - HSMAR2 DNA Mariner -1 1301 568 317 70 0 0 chr13 110663872 110663915 -9080983 - HSMAR2 DNA Mariner -1258 44 2 218 254 32 16 chr13 110664384 110664447 -9080451 + MIR3 SINE MIR 113 176 -32 183 162 0 0 chr13 110667173 110667210 -9077688 + (CA)n Simple_repeat Simple_repeat 2 38 0 284 312 167 14 chr13 110667607 110667822 -9077076 - L3 LINE CR1 -623 954 707 207 374 0 20 chr13 110667836 110667935 -9076963 + MIR SINE MIR 47 143 -65 24 0 0 0 chr13 110667995 110668019 -9076879 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 110668673 110668701 -9076197 + AT_rich Low_complexity Low_complexity 1 28 0 299 326 43 14 chr13 110668837 110668975 -9075923 - MIR SINE MIR -100 162 21 910 233 41 37 chr13 110669231 110669552 -9075346 - L1MA9 LINE L1 0 6291 5983 5402 188 32 29 chr13 110669554 110671487 -9073411 - L1MA9 LINE L1 -268 6044 4103 313 95 0 0 chr13 110672083 110672125 -9072773 + AluSc SINE Alu 92 133 -166 5769 65 26 57 chr13 110673363 110674257 -9070641 + SVA Other Other 1 866 -520 6510 70 28 26 chr13 110674268 110675223 -9069675 + SVA Other Other 430 1386 0 201 39 0 0 chr13 110675881 110675907 -9068991 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3347 82 10 20 chr13 110675908 110676395 -9068503 + L1P5 LINE L1 5310 5791 -360 332 265 24 0 chr13 110676411 110676494 -9068404 - L1MC4 LINE L1 -1340 6702 6618 2179 148 30 0 chr13 110676672 110677045 -9067853 + L1PB1 LINE L1 5767 6150 -1 302 203 14 0 chr13 110677476 110677545 -9067353 + AluS SINE Alu 1 70 -233 1952 133 0 32 chr13 110677648 110677964 -9066934 + AluSq SINE Alu 3 308 -5 225 357 46 58 chr13 110679674 110679915 -9064983 + L2 LINE L2 2950 3187 -85 23 0 0 0 chr13 110679985 110680008 -9064890 + AT_rich Low_complexity Low_complexity 1 23 0 385 305 66 23 chr13 110680819 110681006 -9063892 - MIR3 SINE MIR -65 143 1 214 300 67 0 chr13 110681544 110681604 -9063294 - MIR SINE MIR -7 255 192 207 154 19 19 chr13 110682716 110682768 -9062130 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1697 130 0 34 chr13 110683085 110683347 -9061551 + AluSq SINE Alu 35 287 -26 643 287 65 52 chr13 110684108 110684856 -9060042 - HAL1 LINE L1 -705 1802 1045 203 237 92 69 chr13 110685362 110685493 -9059405 - MIR SINE MIR -55 207 74 210 71 0 0 chr13 110685836 110685864 -9059034 + (TA)n Simple_repeat Simple_repeat 1 28 0 213 281 85 37 chr13 110686026 110686108 -9058790 + L3b LINE CR1 1264 1349 -234 189 74 0 0 chr13 110686271 110686298 -9058600 + (GA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr13 110686921 110686942 -9057956 + AT_rich Low_complexity Low_complexity 1 21 0 2811 7 0 0 chr13 110687357 110687663 -9057235 - AluYa5 SINE Alu -5 306 1 363 325 0 0 chr13 110687922 110688045 -9056853 + LTR67 LTR ERVL 102 224 -333 502 244 28 51 chr13 110688090 110688307 -9056591 + LTR67 LTR ERVL 345 556 -1 22 0 0 0 chr13 110688930 110688952 -9055946 + AT_rich Low_complexity Low_complexity 1 22 0 1230 57 31 0 chr13 110689165 110689324 -9055574 - L1PA11 LINE L1 0 6174 6011 847 194 11 28 chr13 110690411 110690591 -9054307 + FRAM SINE Alu 1 176 0 308 148 16 0 chr13 110690594 110690655 -9054243 + A-rich Low_complexity Low_complexity 5 66 0 1370 157 61 35 chr13 110690852 110691165 -9053733 - THE1C LTR MaLR 0 375 55 374 160 0 13 chr13 110691172 110691247 -9053651 + (TA)n Simple_repeat Simple_repeat 1 74 0 254 294 0 0 chr13 110691248 110691333 -9053565 + L1MC4 LINE L1 6614 6698 -1344 201 211 0 0 chr13 110691338 110691390 -9053508 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 1488 123 0 0 chr13 110691763 110691996 -9052902 - AluSg/x SINE Alu 0 312 80 23 0 0 0 chr13 110692794 110692817 -9052081 + AT_rich Low_complexity Low_complexity 1 23 0 649 295 8 42 chr13 110693874 110694111 -9050787 + MIR SINE MIR 22 250 -12 21 0 0 0 chr13 110694209 110694230 -9050668 + AT_rich Low_complexity Low_complexity 1 21 0 7750 23 0 0 chr13 110694613 110695561 -9049337 + L1PA2 LINE L1 5208 6155 0 2146 50 0 4 chr13 110695887 110696145 -9048753 - AluY SINE Alu -54 257 1 274 121 77 22 chr13 110697380 110697471 -9047427 + (TA)n Simple_repeat Simple_repeat 2 97 0 2960 138 74 25 chr13 110697474 110697674 -9047224 + MER41C LTR ERV1 1 190 -364 2227 75 7 0 chr13 110697674 110697952 -9046946 - AluSc SINE Alu -14 295 16 2960 138 74 25 chr13 110697952 110698279 -9046619 + MER41C LTR ERV1 190 554 0 1895 65 4 0 chr13 110699578 110699826 -9045072 + L1PA4 LINE L1 5907 6155 0 195 354 79 16 chr13 110700381 110700508 -9044390 + MIR SINE MIR 30 164 -98 186 349 35 23 chr13 110700603 110700689 -9044209 - L2 LINE L2 -27 3245 3159 189 319 0 21 chr13 110700883 110700930 -9043968 + L2 LINE L2 3134 3179 -93 4456 23 2 4 chr13 110700989 110701518 -9043380 - L1PA3 LINE L1 -1 6154 5627 183 258 21 10 chr13 110703571 110703668 -9041230 + (CATA)n Simple_repeat Simple_repeat 3 100 0 210 319 35 35 chr13 110704112 110704225 -9040673 - L2 LINE L2 -2 3311 3199 445 89 16 89 chr13 110704530 110704571 -9040327 + (GA)n Simple_repeat Simple_repeat 1 43 -71 185 0 0 39 chr13 110704571 110704597 -9040301 + (TG)n Simple_repeat Simple_repeat 1 25 0 445 89 16 89 chr13 110704597 110704678 -9040220 + (GA)n Simple_repeat Simple_repeat 43 114 0 308 304 96 32 chr13 110705014 110705139 -9039759 - L2 LINE L2 0 3313 3181 2771 7 0 0 chr13 110705469 110705769 -9039129 - AluY SINE Alu -11 300 1 2098 134 8 17 chr13 110707727 110708085 -9036813 + THE1A LTR MaLR 1 355 0 276 245 49 10 chr13 110708138 110708240 -9036658 - L1M4 LINE L1 -3430 2716 2611 23 0 0 0 chr13 110708481 110708504 -9036394 + AT_rich Low_complexity Low_complexity 1 23 0 1483 141 40 11 chr13 110708506 110708783 -9036115 + L1MA5A LINE L1 6010 6294 -3 201 250 0 0 chr13 110709502 110709550 -9035348 - L2 LINE L2 -16 3256 3209 240 261 106 127 chr13 110710058 110710341 -9034557 + L2 LINE L2 2993 3269 -3 222 260 115 19 chr13 110711457 110711561 -9033337 - MIR SINE MIR -42 220 107 360 0 0 0 chr13 110713123 110713163 -9031735 + (TG)n Simple_repeat Simple_repeat 2 41 0 2117 118 3 7 chr13 110713739 110714043 -9030855 - AluSg SINE Alu -7 303 1 222 276 8 63 chr13 110714195 110714322 -9030576 - L2 LINE L2 -220 3052 2933 226 246 220 8 chr13 110715159 110715277 -9029621 - MIR SINE MIR -1 261 119 1061 207 0 0 chr13 110715316 110715524 -9029374 + MER3 DNA MER1_type 2 209 0 863 224 0 0 chr13 110716816 110716986 -9027912 - MER5A DNA MER1_type -14 175 6 373 350 119 16 chr13 110717018 110717321 -9027577 + L3 LINE CR1 1241 1574 -3 355 367 128 22 chr13 110717774 110718234 -9026664 + L1ME4a LINE L1 5337 5845 -276 387 105 0 0 chr13 110719119 110719176 -9025722 + (TG)n Simple_repeat Simple_repeat 1 57 0 407 345 67 0 chr13 110720578 110720772 -9024126 - MIR SINE MIR -51 211 5 207 0 0 0 chr13 110720911 110720934 -9023964 + (TG)n Simple_repeat Simple_repeat 2 24 0 1169 177 50 138 chr13 110721117 110721495 -9023403 + MER7A DNA MER2_type 1 343 -3 248 193 21 62 chr13 110723014 110723159 -9021739 + (TA)n Simple_repeat Simple_repeat 1 139 0 2993 104 2 5 chr13 110723502 110723945 -9020953 + L1PA13 LINE L1 5717 6158 -5 2285 102 0 7 chr13 110725565 110725860 -9019038 + AluSx SINE Alu 1 293 -19 238 246 118 56 chr13 110726036 110726231 -9018667 - MER58 DNA MER1_type 0 2420 9 7163 55 5 13 chr13 110726608 110727770 -9017128 - L1PA8 LINE L1 0 6172 5033 1022 94 0 126 chr13 110728246 110728379 -9016519 + AluSg SINE Alu 14 117 -193 450 0 0 0 chr13 110728379 110728429 -9016469 + (CA)n Simple_repeat Simple_repeat 1 50 0 1022 94 0 126 chr13 110728429 110728486 -9016412 + AluSg SINE Alu 117 180 -130 212 304 87 11 chr13 110731849 110731941 -9012957 + MIR SINE MIR 50 148 -60 2106 161 51 21 chr13 110732096 110732526 -9012372 - MER65A LTR ERV1 0 445 3 21 0 0 0 chr13 110732850 110732871 -9012027 + AT_rich Low_complexity Low_complexity 1 21 0 804 241 18 13 chr13 110733154 110733378 -9011520 + LTR65 LTR ERV1 167 391 -278 234 282 126 48 chr13 110733594 110733800 -9011098 + MER90 LTR ERV1 384 605 -9 202 422 52 7 chr13 110735380 110735534 -9009364 + L2 LINE L2 2870 3030 -242 940 154 72 6 chr13 110735810 110736113 -9008785 - MSTD LTR MaLR 0 396 1 464 182 0 0 chr13 110736999 110737076 -9007822 - AluSg/x SINE Alu -27 282 206 1041 169 6 0 chr13 110737076 110737236 -9007662 - AluJb SINE Alu -149 163 3 25 0 0 0 chr13 110738038 110738063 -9006835 + AT_rich Low_complexity Low_complexity 1 25 0 966 223 17 24 chr13 110738616 110738903 -9005995 + L1M4 LINE L1 2238 2522 -3624 1167 157 26 0 chr13 110739004 110739195 -9005703 - AluSx SINE Alu -116 196 1 492 299 108 0 chr13 110739257 110739571 -9005327 + L1ME4a LINE L1 5588 5935 -186 2132 138 16 37 chr13 110740417 110740800 -9004098 - THE1C LTR MaLR 0 375 1 233 274 0 0 chr13 110741224 110741275 -9003623 + L2 LINE L2 3263 3313 0 322 281 8 4 chr13 110742255 110742519 -9002379 + (TG)n Simple_repeat Simple_repeat 1 265 0 457 296 11 0 chr13 110742563 110742739 -9002159 + (TG)n Simple_repeat Simple_repeat 2 179 0 198 0 0 0 chr13 110742802 110742824 -9002074 + (TG)n Simple_repeat Simple_repeat 2 23 0 1612 150 60 4 chr13 110744839 110745105 -8999793 + AluJb SINE Alu 5 285 -27 2099 114 7 7 chr13 110746887 110747195 -8997703 + AluSg SINE Alu 1 308 -2 28 86 0 0 chr13 110747337 110747407 -8997491 + AT_rich Low_complexity Low_complexity 1 70 0 1974 112 4 0 chr13 110748352 110748628 -8996270 - AluY SINE Alu -34 277 1 186 43 0 0 chr13 110749633 110749656 -8995242 + (A)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr13 110750612 110750632 -8994266 + (TA)n Simple_repeat Simple_repeat 1 20 0 309 265 31 31 chr13 110750697 110750795 -8994103 + MER5A DNA MER1_type 6 103 -86 243 0 0 0 chr13 110751681 110751708 -8993190 + (CA)n Simple_repeat Simple_repeat 1 27 0 219 301 84 48 chr13 110751716 110751799 -8993099 - MIR SINE MIR -149 113 28 2067 136 3 3 chr13 110752063 110752364 -8992534 + AluSx SINE Alu 1 301 -11 248 284 42 21 chr13 110753082 110753168 -8991730 - MIR SINE MIR -76 132 42 1973 168 0 0 chr13 110753168 110753466 -8991432 + AluSx SINE Alu 1 298 -14 2031 185 70 22 chr13 110755184 110755628 -8989270 - MLT1C LTR MaLR -2 465 1 2043 126 7 0 chr13 110756712 110757014 -8987884 - AluY SINE Alu -3 308 5 242 327 55 9 chr13 110757910 110758020 -8986878 - MER94 DNA DNA -15 119 5 2308 99 0 16 chr13 110758581 110758895 -8986003 + AluY SINE Alu 1 309 -2 763 274 55 0 chr13 110759264 110759483 -8985415 + MIR SINE MIR 28 258 -4 245 282 14 70 chr13 110759556 110759627 -8985271 - MIR SINE MIR -110 98 32 437 103 0 0 chr13 110759878 110759946 -8984952 + L1PA5 LINE L1 6083 6150 -4 988 166 31 0 chr13 110760152 110760345 -8984553 + L1MB2 LINE L1 5959 6157 -14 24 0 0 0 chr13 110760345 110760369 -8984529 + AT_rich Low_complexity Low_complexity 1 24 0 2102 115 10 0 chr13 110760921 110761217 -8983681 - AluSg SINE Alu -11 299 1 2253 81 7 0 chr13 110761279 110761586 -8983312 + L1PA8 LINE L1 5856 6164 -8 185 142 88 0 chr13 110761608 110761721 -8983177 + (TA)n Simple_repeat Simple_repeat 2 124 0 3051 136 47 0 chr13 110761946 110762410 -8982488 + MER1A DNA MER1_type 44 529 0 193 239 22 0 chr13 110763253 110763299 -8981599 - L2 LINE L2 0 3272 3226 289 319 115 53 chr13 110764488 110764576 -8980322 + L2 LINE L2 2994 3075 -238 2523 124 8 0 chr13 110764576 110764948 -8979950 + THE1C LTR MaLR 1 375 0 289 319 115 53 chr13 110764948 110765114 -8979784 + L2 LINE L2 3075 3313 0 181 337 102 10 chr13 110766176 110766274 -8978624 - L2 LINE L2 -613 2701 2595 271 293 149 29 chr13 110766412 110766620 -8978278 + MIR SINE MIR 29 261 -1 185 301 80 85 chr13 110767523 110767699 -8977199 + MIR3 SINE MIR 16 190 -18 1076 112 135 11 chr13 110767945 110768123 -8976775 + THE1C LTR MaLR 1 200 -175 1088 123 37 0 chr13 110768443 110768605 -8976293 + THE1C LTR MaLR 208 375 0 1482 190 0 7 chr13 110769028 110769317 -8975581 + L1 LINE L1 4868 5154 -992 265 239 145 24 chr13 110769579 110769702 -8975196 - MIR3 SINE MIR 0 208 66 2287 113 3 6 chr13 110770737 110771081 -8973817 - L1PA14 LINE L1 -2 6159 5817 1916 159 15 0 chr13 110771090 110771423 -8973475 - L1PB1 LINE L1 0 6151 5814 5209 185 32 3 chr13 110772675 110773771 -8971127 + L1MC2 LINE L1 5183 6310 -34 377 276 173 12 chr13 110774354 110774608 -8970290 - L1MC4a LINE L1 -1922 5886 5592 339 192 0 55 chr13 110776129 110776202 -8968696 - MLT1D LTR MaLR -434 71 3 1040 246 138 10 chr13 110776204 110776663 -8968235 + L1ME3A LINE L1 5407 5957 -213 393 75 0 0 chr13 110776876 110776929 -8967969 + (TA)n Simple_repeat Simple_repeat 2 54 0 332 320 75 19 chr13 110777019 110777214 -8967684 + MIR3 SINE MIR 2 204 -58 307 308 62 0 chr13 110778031 110778177 -8966721 - L1ME4a LINE L1 -203 5918 5764 194 339 46 0 chr13 110779118 110779183 -8965715 + L2 LINE L2 3205 3272 0 362 265 250 0 chr13 110779365 110779501 -8965397 - MER5A DNA MER1_type -7 182 13 518 273 17 40 chr13 110779514 110779690 -8965208 - MER5B DNA MER1_type -4 174 3 2941 171 84 6 chr13 110779991 110780622 -8964276 - L1MA4 LINE L1 0 6300 5621 22 0 0 0 chr13 110781448 110781470 -8963428 + AT_rich Low_complexity Low_complexity 1 22 0 345 226 24 0 chr13 110881677 110881761 -8863137 + MER3 DNA MER1_type 124 209 0 317 256 120 16 chr13 110881880 110882005 -8862893 + MLT1L LTR MaLR 478 615 0 590 303 59 53 chr13 110882320 110882624 -8862274 + L2 LINE L2 3008 3313 0 32 43 0 0 chr13 110883581 110883627 -8861271 + AT_rich Low_complexity Low_complexity 1 46 0 199 346 25 37 chr13 110883638 110883719 -8861179 - L2 LINE L2 -36 3236 3157 202 298 7 37 chr13 110883798 110883902 -8860996 + MIR SINE MIR 19 114 -94 1241 302 74 43 chr13 110883905 110884269 -8860629 + L2 LINE L2 2330 2681 -632 1441 170 52 0 chr13 110884269 110884540 -8860358 - L1MC1 LINE L1 -1 6332 6048 1241 302 74 43 chr13 110884540 110885071 -8859827 + L2 LINE L2 2681 3244 -69 337 310 32 19 chr13 110885084 110885239 -8859659 + MIR SINE MIR 106 262 0 2148 96 0 0 chr13 110885387 110885669 -8859229 - AluSc SINE Alu -27 282 1 334 322 49 33 chr13 110885860 110886043 -8858855 - MIR SINE MIR -55 207 22 21 36 0 0 chr13 110886708 110886736 -8858162 + AT_rich Low_complexity Low_complexity 1 28 0 2238 92 10 0 chr13 110886997 110887291 -8857607 - AluY SINE Alu -14 297 1 308 315 73 12 chr13 110887568 110887733 -8857165 - MIR SINE MIR -18 244 70 2709 19 0 22 chr13 110888026 110888339 -8856559 + AluYa5 SINE Alu 1 306 -5 1999 122 0 17 chr13 110890391 110890731 -8854167 - AluY SINE Alu 0 311 1 2016 138 73 3 chr13 110890815 110891156 -8853742 + MSTA LTR MaLR 1 365 -63 2292 89 0 7 chr13 110891157 110891461 -8853437 - AluSc SINE Alu -7 302 1 746 157 0 8 chr13 110891645 110891766 -8853132 + FLAM_C SINE Alu 9 128 -15 610 112 37 9 chr13 110891867 110891974 -8852924 - L1 LINE L1 -2185 3961 3852 334 65 0 0 chr13 110891974 110892020 -8852878 + Tigger2 DNA MER2_type 168 213 -2505 * 759 219 20 0 chr13 110892017 110892168 -8852730 + Tigger2 DNA MER2_type 2554 2707 -11 838 133 42 0 chr13 110892172 110892315 -8852583 + L1MA9 LINE L1 5793 5941 -371 2393 176 25 2 chr13 110892335 110892830 -8852068 + L1MA9 LINE L1 5282 5788 -524 971 211 10 0 chr13 110892852 110893060 -8851838 + Tigger2 DNA MER2_type 1 210 -2508 445 195 11 0 chr13 110893059 110893146 -8851752 + Tigger2 DNA MER2_type 2554 2641 -77 * 2232 168 19 7 chr13 110893232 110893660 -8851238 + L1MA9 LINE L1 5793 6225 -87 2089 180 23 44 chr13 110893668 110894102 -8850796 + MSTB1 LTR MaLR 8 432 0 358 154 0 0 chr13 110894103 110894168 -8850730 + L1MA9 LINE L1 6223 6287 -25 293 192 10 91 chr13 110894311 110894410 -8850488 + MER5C DNA MER1_type 227 317 -7 460 322 29 15 chr13 110894470 110894675 -8850223 + MIR SINE MIR 19 226 -36 1940 135 28 90 chr13 110894725 110895125 -8849773 - Tigger2 DNA MER2_type 0 2718 2344 670 131 15 95 chr13 110895121 110895258 -8849640 - Tigger2 DNA MER2_type -2590 128 3 * 282 167 0 0 chr13 110895555 110895615 -8849283 + (TA)n Simple_repeat Simple_repeat 2 61 0 241 304 59 0 chr13 110896631 110896733 -8848165 - MIR3 SINE MIR -100 108 1 230 297 33 0 chr13 110897130 110897221 -8847677 + MLT1J LTR MaLR 24 117 -394 511 344 36 36 chr13 110897225 110897533 -8847365 + L2 LINE L2 2553 2860 -454 1474 101 31 18 chr13 110897563 110897791 -8847107 - L1PA10 LINE L1 0 6168 5938 193 369 0 0 chr13 110898036 110898120 -8846778 + L2 LINE L2 3182 3265 -7 216 0 0 0 chr13 110898460 110898484 -8846414 + (TTA)n Simple_repeat Simple_repeat 1 24 0 581 320 41 26 chr13 110899406 110899654 -8845244 - MIR SINE MIR 0 262 12 345 267 22 59 chr13 110899763 110899898 -8845000 - L2 LINE L2 -5 3308 3179 1989 161 0 0 chr13 110901114 110901413 -8843485 + AluSx SINE Alu 2 300 -12 2052 91 4 0 chr13 110901413 110901720 -8843178 + AluSp SINE Alu 22 329 0 1825 118 69 147 chr13 110902061 110902102 -8842796 - MSTA LTR MaLR 0 428 385 2523 64 0 0 chr13 110902102 110902413 -8842485 + AluY SINE Alu 1 311 0 1825 118 69 147 chr13 110902413 110902680 -8842218 - MSTA LTR MaLR -43 385 165 2007 71 48 61 chr13 110902680 110902975 -8841923 - AluY SINE Alu -15 296 6 1825 118 69 147 chr13 110902975 110903129 -8841769 - MSTA LTR MaLR -263 165 1 24 0 0 0 chr13 110904461 110904485 -8840413 + AT_rich Low_complexity Low_complexity 1 24 0 296 260 41 0 chr13 110905508 110905581 -8839317 - MIR SINE MIR -150 112 37 23 0 0 0 chr13 110906776 110906799 -8838099 + AT_rich Low_complexity Low_complexity 1 23 0 352 242 133 0 chr13 110908328 110908448 -8836450 + MIR SINE MIR 95 230 -32 236 191 0 0 chr13 110908487 110908529 -8836369 + (ATG)n Simple_repeat Simple_repeat 1 42 0 278 180 0 0 chr13 110908549 110908599 -8836299 + L2 LINE L2 3262 3311 -2 247 349 0 28 chr13 110908790 110908899 -8835999 - MIR SINE MIR -71 191 86 351 348 9 0 chr13 110909570 110909685 -8835213 - MIR SINE MIR -146 116 1 27 0 0 0 chr13 110911309 110911336 -8833562 + AT_rich Low_complexity Low_complexity 1 27 0 340 148 9 37 chr13 110911852 110911960 -8832938 + (TA)n Simple_repeat Simple_repeat 1 105 0 25 51 0 0 chr13 110912001 110912040 -8832858 + AT_rich Low_complexity Low_complexity 1 39 0 704 45 34 56 chr13 110912044 110912222 -8832676 + (TA)n Simple_repeat Simple_repeat 1 174 0 236 289 62 0 chr13 110912320 110912417 -8832481 + L1ME LINE L1 5715 5817 -304 435 271 176 32 chr13 110912509 110912730 -8832168 - MLT1J1 LTR MaLR 0 446 194 402 184 5 81 chr13 110913113 110913298 -8831600 + (CATATA)n Simple_repeat Simple_repeat 3 173 0 340 269 46 15 chr13 110913311 110913441 -8831457 + (CATATA)n Simple_repeat Simple_repeat 4 137 0 632 160 0 40 chr13 110913442 110913617 -8831281 + (TA)n Simple_repeat Simple_repeat 2 169 0 396 172 71 121 chr13 110916268 110916328 -8828570 + MER53 DNA DNA 2 63 -126 1765 163 14 0 chr13 110916328 110916611 -8828287 + AluJo SINE Alu 1 287 -25 396 172 71 121 chr13 110916611 110916748 -8828150 + MER53 DNA DNA 63 189 0 308 311 0 19 chr13 110917450 110917556 -8827342 + MIR SINE MIR 159 262 0 1984 128 125 31 chr13 110917727 110918118 -8826780 - MSTA LTR MaLR 0 428 1 26 0 0 0 chr13 110919746 110919772 -8825126 + AT_rich Low_complexity Low_complexity 1 26 0 435 107 80 0 chr13 110920006 110920118 -8824780 + GA-rich Low_complexity Low_complexity 4 124 0 256 349 85 19 chr13 110920218 110920324 -8824574 - L2 LINE L2 -35 3237 3125 770 214 16 37 chr13 110921014 110921201 -8823697 - MLT1C LTR MaLR 0 467 285 369 189 27 0 chr13 110921196 110921270 -8823628 - MLT1J1 LTR MaLR -314 76 1 * 1493 239 81 7 chr13 110921708 110922143 -8822755 - MLT1C LTR MaLR 0 467 1 867 81 0 16 chr13 110922208 110922332 -8822566 + L1PA8 LINE L1 6047 6168 -4 283 284 59 20 chr13 110923191 110923293 -8821605 + MIR3 SINE MIR 65 170 -38 184 255 21 0 chr13 110924207 110924254 -8820644 - MIR SINE MIR -124 84 37 24 0 0 0 chr13 110924429 110924453 -8820445 + AT_rich Low_complexity Low_complexity 1 24 0 260 225 19 100 chr13 110924791 110924943 -8819955 + MIR SINE MIR 15 148 -61 234 0 0 0 chr13 110927001 110927027 -8817871 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr13 110927026 110927060 -8817838 + (CA)n Simple_repeat Simple_repeat 1 34 0 200 240 165 70 chr13 110927396 110927596 -8817302 + MIR SINE MIR 38 256 -6 1721 167 4 0 chr13 110928160 110928424 -8816474 - AluJb SINE Alu -33 279 15 186 43 0 0 chr13 110929461 110929484 -8815414 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 471 298 23 0 chr13 110929504 110929675 -8815223 + MIR SINE MIR 72 246 -16 382 288 34 67 chr13 110930207 110930431 -8814467 + MIR SINE MIR 2 223 -39 33 0 0 0 chr13 110930886 110930919 -8813979 + AT_rich Low_complexity Low_complexity 1 33 0 200 343 128 40 chr13 110931593 110932139 -8812759 + L2 LINE L2 2164 2757 -557 375 329 19 13 chr13 110932356 110932514 -8812384 - MIR SINE MIR -64 198 40 1953 129 32 0 chr13 110933083 110933363 -8811535 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr13 110934228 110934250 -8810648 + AT_rich Low_complexity Low_complexity 1 22 0 1464 298 105 42 chr13 110934904 110935817 -8809081 - L1MEc LINE L1 -4805 1591 558 2327 97 0 0 chr13 110935817 110936116 -8808782 - AluSq SINE Alu -14 299 1 1464 298 105 42 chr13 110936116 110936598 -8808300 - L1MEc LINE L1 -5838 558 108 1256 205 79 18 chr13 110936682 110936960 -8807938 - AluJo SINE Alu -3 299 5 207 0 0 0 chr13 110939577 110939600 -8805298 + (TG)n Simple_repeat Simple_repeat 2 24 0 3093 287 121 60 chr13 110940360 110942140 -8802758 + L2 LINE L2 397 2286 -1028 586 330 184 22 chr13 110942722 110943456 -8801442 + L2 LINE L2 971 1823 -1491 397 338 95 35 chr13 110943429 110943684 -8801214 + L2 LINE L2 2891 3180 -133 * 363 23 0 0 chr13 110943684 110943728 -8801170 + (CA)n Simple_repeat Simple_repeat 1 44 0 397 338 95 35 chr13 110943728 110943871 -8801027 + L2 LINE L2 3180 3313 0 476 260 266 16 chr13 110944558 110944862 -8800036 + MLT1E LTR MaLR 136 515 -78 349 292 0 0 chr13 110946474 110946563 -8798335 - L1MC4 LINE L1 -1340 6702 6614 * 379 270 0 0 chr13 110946486 110946575 -8798323 + L1MC4 LINE L1 6615 6703 -1339 21 0 0 0 chr13 110947925 110947946 -8796952 + AT_rich Low_complexity Low_complexity 1 21 0 319 316 58 0 chr13 110948086 110948225 -8796673 - MIR SINE MIR -113 149 3 279 331 44 29 chr13 110948378 110948514 -8796384 - L2 LINE L2 -4 3309 3172 351 352 88 33 chr13 110948825 110949132 -8795766 - L2 LINE L2 -556 2758 2435 630 283 22 31 chr13 110949663 110949889 -8795009 - MIR SINE MIR 0 262 39 356 323 42 32 chr13 110951181 110951398 -8793500 + Charlie8 DNA MER1_type 1 219 -2198 516 287 51 8 chr13 110951606 110951843 -8793055 - L1ME LINE L1 -307 5814 5568 7587 30 0 1 chr13 110951999 110953005 -8791893 + L1PA3 LINE L1 5146 6150 -5 189 318 0 0 chr13 110954268 110954331 -8790567 - L2 LINE L2 0 3313 3251 6639 53 0 14 chr13 110954669 110955184 -8789714 + L1PA7 LINE L1 5316 5816 -338 2121 118 7 3 chr13 110955184 110955481 -8789417 + AluSc SINE Alu 1 298 -11 6639 53 0 14 chr13 110955481 110955814 -8789084 + L1PA7 LINE L1 5816 6152 -2 2258 56 0 11 chr13 110956419 110956750 -8788148 - AluY SINE Alu 0 328 1 2223 149 5 16 chr13 110958699 110959075 -8785823 + THE1C LTR MaLR 4 375 0 727 211 14 7 chr13 110960284 110960431 -8784467 + Tigger2 DNA MER2_type 1 148 -2570 * 1988 182 39 3 chr13 110960408 110960770 -8784128 + Tigger2 DNA MER2_type 2344 2718 0 23 33 0 0 chr13 110961027 110961057 -8783841 + AT_rich Low_complexity Low_complexity 1 30 0 1125 37 0 0 chr13 110961272 110961408 -8783490 - L1PA4 LINE L1 -1570 4576 4441 7478 33 0 3 chr13 110961408 110962971 -8781927 + L1PA4 LINE L1 4590 6149 -6 246 231 65 19 chr13 110964283 110964391 -8780507 - L1ME4a LINE L1 -25 6096 5984 318 320 54 27 chr13 110964977 110965124 -8779774 - MLT1K LTR MaLR -401 187 37 2313 102 3 0 chr13 110965328 110965623 -8779275 - AluSx SINE Alu -14 298 3 196 433 8 8 chr13 110967040 110967174 -8777724 - MIR SINE MIR -109 153 20 22 0 0 0 chr13 110967299 110967321 -8777577 + AT_rich Low_complexity Low_complexity 1 22 0 1540 247 6 11 chr13 110968423 110968775 -8776123 + MLT1A2 LTR MaLR 4 353 -21 717 206 138 12 chr13 110969552 110969712 -8775186 + AluJo SINE Alu 9 188 -124 2242 107 0 7 chr13 110970343 110970643 -8774255 + AluSg SINE Alu 1 298 -12 549 290 96 53 chr13 110971456 110971873 -8773025 + MLT1J1 LTR MaLR 1 435 -11 369 145 0 0 chr13 110971922 110971984 -8772914 + (TCCCC)n Simple_repeat Simple_repeat 4 65 0 305 215 0 13 chr13 110972005 110972084 -8772814 + CT-rich Low_complexity Low_complexity 2 79 0 264 296 142 84 chr13 110972775 110972905 -8771993 - L2 LINE L2 -1032 2282 2132 2222 95 0 0 chr13 110972905 110973189 -8771709 + AluSg SINE Alu 12 295 -15 264 296 142 84 chr13 110973189 110973284 -8771614 - L2 LINE L2 -1182 2132 2044 600 216 98 1 chr13 110973594 110973903 -8770995 - Zaphod DNA AcHobo -48 3983 3614 537 269 219 70 chr13 110973925 110974686 -8770212 - Zaphod DNA AcHobo -3061 970 96 946 311 56 17 chr13 110974796 110975259 -8769639 - L2 LINE L2 -1298 2016 1536 5086 201 68 26 chr13 110976572 110977807 -8767091 - L1MC3 LINE L1 0 7785 6499 21 0 0 0 chr13 110978469 110978490 -8766408 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 110978667 110978700 -8766198 + AT_rich Low_complexity Low_complexity 1 33 0 225 333 70 45 chr13 110982543 110982699 -8762199 + MIR SINE MIR 70 229 -33 249 83 0 0 chr13 110982717 110982753 -8762145 + (TG)n Simple_repeat Simple_repeat 2 37 0 200 318 61 0 chr13 110982980 110983046 -8761852 - MIR SINE MIR -13 249 180 2153 129 0 0 chr13 110984301 110984603 -8760295 + AluSc SINE Alu 1 302 -7 273 133 40 0 chr13 110984865 110984940 -8759958 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 482 274 16 8 chr13 110985931 110986055 -8758843 - L2 LINE L2 -1 3312 3188 566 149 0 53 chr13 110987042 110987156 -8757742 + FLAM_A SINE Alu 22 129 -13 811 230 29 35 chr13 110987755 110988301 -8756597 + L1M1 LINE L1 3359 3971 -3594 1994 157 0 0 chr13 110988651 110988957 -8755941 - AluSx SINE Alu 0 312 7 489 130 0 0 chr13 110988959 110989036 -8755862 + MSTB LTR MaLR 350 426 0 3800 189 28 25 chr13 110989036 110989489 -8755409 - L1MB2 LINE L1 -40 6131 5681 2112 128 7 0 chr13 110989489 110989794 -8755104 - AluSp SINE Alu -6 307 1 3800 189 28 25 chr13 110989794 110990358 -8754540 - L1MB2 LINE L1 -490 5681 5112 2597 108 8 3 chr13 110990365 110990727 -8754171 + THE1B LTR MaLR 1 364 0 186 370 20 20 chr13 110990733 110990833 -8754065 - MIR SINE MIR -68 140 41 23 0 0 0 chr13 110991155 110991178 -8753720 + AT_rich Low_complexity Low_complexity 1 23 0 405 312 112 12 chr13 110991782 110991952 -8752946 - MIR SINE MIR -41 221 35 2469 68 0 13 chr13 110995037 110995345 -8749553 + AluY SINE Alu 1 304 -7 244 302 72 27 chr13 110995805 110995938 -8748960 + MIR SINE MIR 3 141 -67 304 311 9 9 chr13 110996240 110996346 -8748552 - MIR SINE MIR -73 135 30 2168 136 0 3 chr13 110997063 110997373 -8747525 - AluSg SINE Alu -1 309 1 270 0 0 0 chr13 110998946 110998976 -8745922 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr13 110999858 110999883 -8745015 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 1844 137 51 0 chr13 111000289 111000460 -8744438 - AluJo SINE Alu -5 307 113 356 21 42 0 chr13 111000460 111000508 -8744390 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1844 137 51 0 chr13 111000508 111000628 -8744270 - AluJo SINE Alu -199 113 1 424 336 115 42 chr13 111000629 111000786 -8744112 - L2 LINE L2 -225 3047 2903 1434 229 60 29 chr13 111000786 111001235 -8743663 - MLT1C LTR MaLR -3 464 2 424 336 115 42 chr13 111001235 111001730 -8743168 - L2 LINE L2 -369 2903 2343 215 259 0 37 chr13 111001727 111001781 -8743117 + L2 LINE L2 3203 3254 -18 * 368 291 37 15 chr13 111001807 111001941 -8742957 - L2 LINE L2 -960 2354 2218 188 98 0 73 chr13 111002888 111002929 -8741969 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 25 31 0 0 chr13 111003062 111003094 -8741804 + AT_rich Low_complexity Low_complexity 1 32 0 2752 10 0 0 chr13 111004008 111004310 -8740588 - AluY SINE Alu -9 302 1 415 270 30 0 chr13 111004494 111004594 -8740304 - MER5A DNA MER1_type -83 106 4 1983 149 0 3 chr13 111004849 111005144 -8739754 - AluSx SINE Alu -13 299 6 230 405 92 0 chr13 111005488 111005641 -8739257 + L2 LINE L2 3100 3266 -6 212 171 0 0 chr13 111007992 111008033 -8736865 - MIR3 SINE MIR 0 208 168 1189 202 53 1 chr13 111008925 111009224 -8735674 + MER33 DNA MER1_type 1 302 -22 282 406 35 0 chr13 111009524 111009667 -8735231 - L2 LINE L2 0 3272 3125 225 94 0 0 chr13 111009676 111009708 -8735190 + (A)n Simple_repeat Simple_repeat 1 32 0 183 306 153 32 chr13 111009811 111009935 -8734963 - MIR SINE MIR -76 186 48 1040 204 21 36 chr13 111010379 111010659 -8734239 - MER58B DNA MER1_type -7 334 59 284 257 40 0 chr13 111011167 111011241 -8733657 - MIR SINE MIR -69 193 117 255 296 0 0 chr13 111013078 111013149 -8731749 + Charlie7 DNA MER1_type 420 490 -2122 540 201 152 57 chr13 111013169 111013518 -8731380 + Charlie7 DNA MER1_type 1722 2103 -509 2902 181 74 37 chr13 111014475 111015176 -8729722 + LTR8A LTR ERV1 1 727 0 1802 148 39 3 chr13 111015203 111015486 -8729412 + AluSx SINE Alu 1 293 -19 32 0 0 0 chr13 111015505 111015537 -8729361 + AT_rich Low_complexity Low_complexity 1 32 0 290 247 35 35 chr13 111015843 111015928 -8728970 + L2 LINE L2 3188 3272 0 357 152 10 131 chr13 111016112 111016157 -8728741 - LTR26 LTR ERV1 -119 484 456 2040 127 35 0 chr13 111016157 111016441 -8728457 - AluSx SINE Alu -17 295 2 357 152 10 131 chr13 111016441 111016494 -8728404 - LTR26 LTR ERV1 -147 456 398 1732 141 6 47 chr13 111016550 111016746 -8728152 + LTR26 LTR ERV1 298 478 -125 3339 163 56 40 chr13 111016746 111017426 -8727472 + LTR8 LTR ERV1 1 691 0 1732 141 6 47 chr13 111017426 111017548 -8727350 + LTR26 LTR ERV1 478 603 0 2564 121 11 3 chr13 111018494 111018866 -8726032 - THE1C LTR MaLR 0 375 1 184 296 0 19 chr13 111019448 111019502 -8725396 - L2 LINE L2 -48 3265 3213 294 325 65 16 chr13 111019535 111019658 -8725240 + MIR3 SINE MIR 6 134 -74 350 313 75 19 chr13 111019696 111019910 -8724988 - LTR33 LTR ERVL -4 517 292 324 70 0 0 chr13 111023878 111023921 -8720977 + (TG)n Simple_repeat Simple_repeat 1 43 0 2439 63 0 3 chr13 111024177 111024476 -8720422 - AluY SINE Alu -13 298 1 517 85 0 24 chr13 111024669 111024751 -8720147 - MADE1 DNA Mariner 0 80 1 239 196 43 0 chr13 111025335 111025381 -8719517 + L2 LINE L2 3224 3271 -1 27 29 0 0 chr13 111025672 111025706 -8719192 + AT_rich Low_complexity Low_complexity 1 34 0 2047 131 7 7 chr13 111025881 111026179 -8718719 + AluSg SINE Alu 1 298 -12 728 73 40 8 chr13 111026194 111026318 -8718580 + GA-rich Low_complexity Low_complexity 3 130 0 23 0 0 0 chr13 111026751 111026774 -8718124 + AT_rich Low_complexity Low_complexity 1 23 0 387 242 210 8 chr13 111027001 111027125 -8717773 + MER20 DNA MER1_type 4 152 -67 5532 118 18 9 chr13 111028266 111029392 -8715506 + L1PA13 LINE L1 5029 6162 -1 216 158 0 0 chr13 111029552 111029590 -8715308 + (TG)n Simple_repeat Simple_repeat 2 39 0 559 321 74 15 chr13 111030914 111031185 -8713713 - L3 LINE CR1 -739 838 552 913 193 26 26 chr13 111031211 111031439 -8713459 - L1ME2 LINE L1 -2 6162 5935 261 0 0 0 chr13 111031521 111031550 -8713348 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 686 251 48 0 chr13 111032453 111032620 -8712278 + MER5B DNA MER1_type 4 178 0 783 192 0 0 chr13 111032803 111032933 -8711965 - FLAM_A SINE Alu -3 130 1 2374 107 0 0 chr13 111033777 111034087 -8710811 - AluSg SINE Alu 0 310 1 191 250 0 50 chr13 111035327 111035367 -8709531 - L2 LINE L2 -87 3185 3148 1450 167 80 52 chr13 111037324 111037689 -8707209 - THE1C LTR MaLR 0 375 1 267 116 0 0 chr13 111038529 111038572 -8706326 - FRAM/FAM SINE Alu -84 82 40 216 97 0 0 chr13 111039153 111039184 -8705714 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 355 315 56 7 chr13 111039915 111040058 -8704840 - MLT1I LTR MaLR -102 307 158 293 327 131 0 chr13 111040258 111040365 -8704533 + MER115 DNA AcHobo 2 122 -571 847 260 40 27 chr13 111040368 111042194 -8702704 + L1ME2 LINE L1 3168 6153 -11 252 0 0 0 chr13 111042194 111042222 -8702676 + (CA)n Simple_repeat Simple_repeat 2 29 0 1040 268 19 0 chr13 111042223 111042585 -8702313 + L1MB8 LINE L1 2689 3057 -3089 2645 245 76 23 chr13 111042620 111043682 -8701216 + L1MB8 LINE L1 4086 5204 -942 692 229 48 5 chr13 111043676 111043864 -8701034 + L1MB8 LINE L1 5505 5700 -478 * 39641 56 13 1 chr13 111044270 111050330 -8694568 - L1PA5 LINE L1 -5 6149 11 1705 200 33 25 chr13 111050336 111050816 -8694082 + L1MB8 LINE L1 5690 6173 -5 195 42 0 0 chr13 111050846 111050870 -8694028 + (GA)n Simple_repeat Simple_repeat 2 25 0 355 326 56 7 chr13 111051037 111051181 -8693717 + MIR3 SINE MIR 44 194 -14 23 33 0 0 chr13 111052820 111052850 -8692048 + AT_rich Low_complexity Low_complexity 1 30 0 2377 88 0 10 chr13 111052929 111053237 -8691661 + AluSp SINE Alu 1 305 -8 610 113 9 9 chr13 111053302 111053408 -8691490 + L1M1 LINE L1 5626 5731 -573 1736 172 3 30 chr13 111053506 111053803 -8691095 + AluJo SINE Alu 1 289 -23 29 0 0 0 chr13 111053822 111053851 -8691047 + AT_rich Low_complexity Low_complexity 1 29 0 334 241 46 0 chr13 111053865 111053952 -8690946 - MER20 DNA MER1_type -4 215 125 560 245 38 54 chr13 111053979 111054163 -8690735 + MLT2B1 LTR ERVL 290 470 -50 303 120 0 0 chr13 111054205 111054255 -8690643 + MLT2B1 LTR ERVL 465 514 -6 429 322 7 14 chr13 111054266 111054409 -8690489 - MIR SINE MIR -87 175 34 1938 106 0 0 chr13 111055900 111056179 -8688719 - AluSx SINE Alu 0 305 27 2289 71 0 3 chr13 111056981 111057277 -8687621 - AluY SINE Alu -16 295 1 3385 165 11 48 chr13 111057461 111058195 -8686703 + L1MA4 LINE L1 5589 6295 -5 2938 180 3 0 chr13 111058200 111058768 -8686130 - L1PA12 LINE L1 -990 5156 4587 6393 95 2 8 chr13 111058769 111059781 -8685117 + L1PA12 LINE L1 5165 6168 0 502 247 101 0 chr13 111062192 111062350 -8682548 - MIR SINE MIR -10 252 79 211 211 0 0 chr13 111063212 111063250 -8681648 + (CA)n Simple_repeat Simple_repeat 1 38 0 1015 178 6 0 chr13 111063410 111063573 -8681325 + AluJ SINE Alu 1 164 -148 847 147 0 0 chr13 111063635 111063764 -8681134 + AluJ SINE Alu 167 295 -17 296 247 111 0 chr13 111064826 111064907 -8679991 - L3 LINE CR1 -9 1568 1479 255 344 105 34 chr13 111064969 111065263 -8679635 - L3 LINE CR1 -684 893 579 305 253 12 36 chr13 111065756 111065839 -8679059 + L2 LINE L2 3233 3313 0 21 71 0 0 chr13 111067476 111067518 -8677380 + AT_rich Low_complexity Low_complexity 1 42 0 1555 174 67 12 chr13 111069652 111069996 -8674902 - MLT1A2 LTR MaLR -11 363 1 2024 137 26 10 chr13 111070859 111071166 -8673732 - AluSx SINE Alu 0 312 1 1987 106 0 22 chr13 111072538 111072812 -8672086 + AluY SINE Alu 33 300 -11 285 319 78 30 chr13 111073237 111073403 -8671495 + MIR SINE MIR 56 229 -33 2418 41 0 14 chr13 111073731 111074048 -8670850 - AluY SINE Alu 0 311 1 238 293 12 0 chr13 111074117 111074199 -8670699 + (TA)n Simple_repeat Simple_repeat 2 84 0 239 164 0 15 chr13 111074684 111074751 -8670147 + (CA)n Simple_repeat Simple_repeat 1 66 0 5256 99 19 6 chr13 111075462 111076260 -8668638 + L1PA10 LINE L1 5346 6153 -15 297 282 75 75 chr13 111076691 111076865 -8668033 + MIR SINE MIR 35 208 -54 509 302 38 38 chr13 111078118 111078330 -8666568 - MIR SINE MIR -43 219 8 809 167 0 8 chr13 111078902 111079034 -8665864 - FLAM_C SINE Alu -2 131 1 201 306 28 0 chr13 111079041 111079113 -8665785 - MIR SINE MIR -117 145 72 406 325 38 29 chr13 111081107 111081316 -8663582 - MIR SINE MIR -21 241 31 255 274 46 127 chr13 111081452 111081564 -8663334 - MIR SINE MIR -20 242 151 2182 124 0 7 chr13 111081564 111081870 -8663028 - AluSq SINE Alu -9 304 1 255 274 46 127 chr13 111081870 111081954 -8662944 - MIR SINE MIR -111 151 62 219 232 0 0 chr13 111082138 111082194 -8662704 + CT-rich Low_complexity Low_complexity 2 57 0 947 176 32 0 chr13 111082220 111082407 -8662491 + Tigger5 DNA MER2_type 2131 2323 0 248 317 188 45 chr13 111083189 111083813 -8661085 - L2 LINE L2 -652 2662 1950 429 171 0 0 chr13 111084054 111084124 -8660774 + Tigger1 DNA MER2_type 280 349 -2069 852 58 33 0 chr13 111084124 111084244 -8660654 + Tigger1 DNA MER2_type 828 951 -1467 * 1076 181 22 4 chr13 111084229 111084455 -8660443 - Tigger1 DNA MER2_type -2188 230 1 339 25 0 0 chr13 111084523 111084563 -8660335 + (CA)n Simple_repeat Simple_repeat 2 41 0 348 24 0 0 chr13 111085425 111085466 -8659432 + (CA)n Simple_repeat Simple_repeat 1 41 0 210 71 0 0 chr13 111086006 111086034 -8658864 + (T)n Simple_repeat Simple_repeat 1 28 0 909 194 62 28 chr13 111087099 111087310 -8657588 + MER20 DNA MER1_type 1 218 -1 238 310 97 19 chr13 111088992 111089147 -8655751 + L2 LINE L2 3076 3242 -30 1189 239 81 6 chr13 111089267 111089615 -8655283 + MLT1B LTR MaLR 1 374 -16 2620 89 20 8 chr13 111089615 111090006 -8654892 + MLT2A2 LTR ERVL 1 396 -57 2047 125 3 0 chr13 111090010 111090298 -8654600 - AluSq SINE Alu -24 289 1 295 330 110 6 chr13 111090852 111091025 -8653873 + MIR SINE MIR 59 249 -13 957 224 121 21 chr13 111091128 111091459 -8653439 - MLT1A1 LTR MaLR -1 364 1 247 328 8 90 chr13 111094433 111094567 -8650331 + MIR3 SINE MIR 15 137 -71 216 97 0 0 chr13 111094660 111094691 -8650207 + (TC)n Simple_repeat Simple_repeat 1 31 0 689 160 17 0 chr13 111098392 111098511 -8646387 + AluSg/x SINE Alu 181 301 -11 300 27 0 0 chr13 111099316 111099353 -8645545 + (TG)n Simple_repeat Simple_repeat 2 38 0 443 214 56 40 chr13 111099597 111099723 -8645175 + MER63 DNA MER1_type 7 760 -302 1096 259 95 58 chr13 111099935 111100560 -8644338 + MER20B DNA MER1_type 8 663 -120 2193 124 0 3 chr13 111100560 111100859 -8644039 - AluSq SINE Alu -15 298 1 1096 259 95 58 chr13 111100859 111100928 -8643970 + MER20B DNA MER1_type 663 728 -55 453 66 0 0 chr13 111101376 111101450 -8643448 + (TG)n Simple_repeat Simple_repeat 1 135 0 453 66 0 0 chr13 111101450 111101511 -8643387 + (TG)n Simple_repeat Simple_repeat 2 62 0 212 370 65 0 chr13 111101525 111101633 -8643265 + L2 LINE L2 3155 3269 -3 491 188 42 0 chr13 111101785 111101881 -8643017 - MER5A DNA MER1_type -80 109 10 2234 110 0 0 chr13 111102236 111102537 -8642361 - AluSg SINE Alu -9 301 1 189 284 75 15 chr13 111103377 111103444 -8641454 + L2 LINE L2 3201 3271 -1 2593 125 34 5 chr13 111103582 111103997 -8640901 + MSTA LTR MaLR 1 427 -1 22 0 0 0 chr13 111104262 111104284 -8640614 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 111104326 111104349 -8640549 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 316 0 22 22 chr13 111104622 111104667 -8640231 + (TAA)n Simple_repeat Simple_repeat 3 47 0 300 53 0 0 chr13 111106068 111106106 -8638792 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 1500 167 114 33 chr13 111106453 111106813 -8638085 + MSTA LTR MaLR 1 389 -39 238 254 0 0 chr13 111107088 111107143 -8637755 + (TG)n Simple_repeat Simple_repeat 1 55 0 757 59 10 0 chr13 111108618 111108719 -8636179 - AluY SINE Alu -7 304 203 2150 122 7 0 chr13 111109066 111109370 -8635528 - AluSx SINE Alu -6 306 1 796 229 11 11 chr13 111109521 111109696 -8635202 - MSTD LTR MaLR -3 393 219 219 295 156 35 chr13 111109765 111109938 -8634960 + MIR SINE MIR 13 206 -56 1575 204 61 9 chr13 111110239 111110583 -8634315 - MLT1A1 LTR MaLR -3 362 1 333 340 97 0 chr13 111110787 111110931 -8633967 - MIR SINE MIR -15 247 90 1944 229 98 9 chr13 111112646 111113200 -8631698 - MLT1E2 LTR MaLR 0 626 24 2389 84 10 0 chr13 111113883 111114193 -8630705 - AluSq SINE Alu 0 313 1 231 61 0 0 chr13 111115620 111115653 -8629245 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 32 67 0 0 chr13 111115750 111115810 -8629088 + AT_rich Low_complexity Low_complexity 1 60 0 518 342 41 22 chr13 111116526 111116845 -8628053 - MLT1I LTR MaLR -39 370 46 350 351 34 13 chr13 111117095 111117334 -8627564 - HAL1b LINE L1 -754 594 351 2219 62 12 89 chr13 111117522 111117858 -8627040 - AluY SINE Alu 0 311 2 25 65 0 0 chr13 111117897 111117943 -8626955 + AT_rich Low_complexity Low_complexity 1 46 0 2022 120 3 10 chr13 111118868 111119160 -8625738 + AluSc SINE Alu 1 290 -19 1567 135 120 8 chr13 111119412 111119678 -8625220 - AluSg1 SINE Alu -12 297 2 232 301 169 0 chr13 111119678 111119761 -8625137 + L2 LINE L2 3181 3277 -36 2261 98 0 0 chr13 111120372 111120658 -8624240 + AluSx SINE Alu 1 286 -26 197 331 69 58 chr13 111121240 111121600 -8623298 - L2 LINE L2 -492 2822 2459 1873 173 35 34 chr13 111121781 111122329 -8622569 - MLT2A2 LTR ERVL 0 554 1 589 238 70 32 chr13 111122837 111122859 -8622039 - L1MC/D LINE L1 -558 5606 5586 1940 128 42 0 chr13 111122859 111123147 -8621751 - AluSx SINE Alu -12 300 1 589 238 70 32 chr13 111123147 111123333 -8621565 - L1MC/D LINE L1 -578 5586 5416 183 360 0 12 chr13 111123678 111123764 -8621134 - L2 LINE L2 -2518 796 712 657 317 18 37 chr13 111125693 111126128 -8618770 + L1ME2 LINE L1 5727 6153 -11 22 0 0 0 chr13 111126726 111126748 -8618150 + AT_rich Low_complexity Low_complexity 1 22 0 561 288 56 5 chr13 111126752 111126950 -8617948 - MIR SINE MIR -26 236 29 3832 70 30 24 chr13 111127054 111127594 -8617304 - L1PA8 LINE L1 0 6172 5630 720 333 52 10 chr13 111128088 111128496 -8616402 + L2 LINE L2 2423 2847 -467 184 302 129 55 chr13 111130802 111131004 -8613894 + L2 LINE L2 2174 2390 -924 287 25 25 0 chr13 111131608 111131648 -8613250 + (CATAT)n Simple_repeat Simple_repeat 3 43 0 24 53 0 0 chr13 111131808 111131846 -8613052 + AT_rich Low_complexity Low_complexity 1 38 0 245 325 166 30 chr13 111132317 111132649 -8612249 - L3 LINE CR1 -91 1486 1110 221 274 24 36 chr13 111132644 111132728 -8612170 - L2 LINE L2 -1 3271 3189 * 221 262 16 16 chr13 111134145 111134206 -8610692 + MER5B DNA MER1_type 116 176 -2 833 303 84 34 chr13 111134704 111134779 -8610119 + L2 LINE L2 2638 2708 -605 2267 37 0 4 chr13 111134779 111135052 -8609846 - L1PA3 LINE L1 -3 6152 5881 833 303 84 34 chr13 111135052 111135601 -8609297 + L2 LINE L2 2708 3308 -5 225 353 173 17 chr13 111135638 111135811 -8609087 - MIR SINE MIR -61 201 2 248 258 0 0 chr13 111136052 111136114 -8608784 + A-rich Low_complexity Low_complexity 1 62 0 1845 154 7 4 chr13 111138108 111138422 -8606476 + AluSx SINE Alu 1 315 0 684 283 96 8 chr13 111138568 111138808 -8606090 - MIR SINE MIR 0 262 2 2209 122 16 32 chr13 111139484 111139853 -8605045 - THE1B LTR MaLR 0 364 2 4214 100 3 5 chr13 111139854 111140454 -8604444 - THE1B-int LTR MaLR 0 1580 982 1532 157 67 13 chr13 111140454 111140766 -8604132 - THE1B LTR MaLR -33 331 3 2169 161 49 7 chr13 111140895 111141305 -8603593 + MSTA LTR MaLR 1 427 -1 2339 113 0 0 chr13 111141834 111142145 -8602753 - AluSx SINE Alu -1 311 1 270 232 0 0 chr13 111142610 111142666 -8602232 - MIR SINE MIR -19 243 188 22 88 0 0 chr13 111145135 111145192 -8599706 + AT_rich Low_complexity Low_complexity 1 57 0 222 269 0 0 chr13 111146251 111146303 -8598595 - MER91B DNA MER1_type -117 73 22 664 227 0 15 chr13 111146918 111147050 -8597848 + FLAM_C SINE Alu 2 131 -2 831 159 38 6 chr13 111149454 111149611 -8595287 + MLT1D LTR MaLR 344 505 0 426 244 100 17 chr13 111149635 111149865 -8595033 - L1ME LINE L1 -634 5530 5282 531 274 109 53 chr13 111150085 111150665 -8594233 - L1ME LINE L1 -1052 5094 4483 41 36 0 0 chr13 111150810 111150865 -8594033 + AT_rich Low_complexity Low_complexity 1 55 0 346 330 35 18 chr13 111151233 111151456 -8593442 + L1MC/D LINE L1 5483 5708 -462 1956 180 2 84 chr13 111151663 111152114 -8592784 - MLT2D LTR ERVL 0 414 1 324 184 41 10 chr13 111152114 111152212 -8592686 + (TAGA)n Simple_repeat Simple_repeat 3 103 0 1654 169 149 6 chr13 111152214 111152563 -8592335 - MSTA LTR MaLR -2 426 28 5407 152 43 20 chr13 111152568 111153650 -8591248 - Tigger3b DNA MER2_type -122 1109 3 401 234 103 57 chr13 111153650 111153825 -8591073 - MIR SINE MIR -60 202 20 332 127 0 0 chr13 111154025 111154080 -8590818 + Tigger3b DNA MER2_type 1036 1090 -142 708 183 103 75 chr13 111154229 111154442 -8590456 - MER20 DNA MER1_type 0 219 1 247 340 130 43 chr13 111155378 111155754 -8589144 + L2 LINE L2 2569 2977 -337 252 219 47 0 chr13 111156411 111156475 -8588423 + (TCTG)n Simple_repeat Simple_repeat 1 67 0 401 130 39 0 chr13 111156492 111156569 -8588329 + CT-rich Low_complexity Low_complexity 1 80 0 1559 219 3 0 chr13 111156693 111157116 -8587782 - AluJb SINE Alu 0 424 1 1514 221 58 9 chr13 111157280 111157628 -8587270 - MLT1A1 LTR MaLR 0 365 1 250 272 25 25 chr13 111158661 111158742 -8586156 - MIR SINE MIR -149 113 33 389 302 59 24 chr13 111160069 111160238 -8584660 - MIR SINE MIR -52 210 36 327 228 13 0 chr13 111161249 111161328 -8583570 - MER81 DNA DNA -32 82 3 562 216 10 14 chr13 111162503 111162922 -8581976 + (TG)n Simple_repeat Simple_repeat 1 417 0 582 291 67 12 chr13 111163581 111163835 -8581063 - MLT1A1 LTR MaLR 0 467 200 12975 36 11 1 chr13 111163860 111166199 -8578699 + L1PA5 LINE L1 3794 6146 -8 26 30 0 0 chr13 111166199 111166232 -8578666 + AT_rich Low_complexity Low_complexity 1 33 0 793 179 29 63 chr13 111166245 111166452 -8578446 - MLT1A1 LTR MaLR -165 200 1 210 162 0 0 chr13 111166474 111166511 -8578387 + (TA)n Simple_repeat Simple_repeat 1 37 0 687 109 197 0 chr13 111166521 111166668 -8578230 - L1MA3 LINE L1 0 6305 6130 739 184 61 0 chr13 111166669 111166816 -8578082 - AluSg/x SINE Alu 0 312 157 1798 137 12 6 chr13 111166816 111167145 -8577753 - L1MA3 LINE L1 -156 6149 5819 1270 137 14 0 chr13 111167174 111167385 -8577513 - MLT2C1 LTR ERVL -183 214 1 654 169 133 42 chr13 111167393 111167559 -8577339 - MER20 DNA MER1_type -37 182 2 188 67 33 0 chr13 111168586 111168616 -8576282 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 234 81 0 0 chr13 111169311 111169348 -8575550 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 201 284 57 11 chr13 111169549 111169637 -8575261 - MIR SINE MIR -54 208 117 390 320 0 8 chr13 111170221 111170346 -8574552 + L2 LINE L2 3190 3313 0 193 331 122 50 chr13 111171377 111171558 -8573340 + L3b LINE CR1 1259 1452 -131 202 232 36 149 chr13 111172422 111172590 -8572308 - MIR3 SINE MIR -30 178 30 180 0 0 0 chr13 111173260 111173280 -8571618 + (A)n Simple_repeat Simple_repeat 1 20 0 959 204 24 0 chr13 111173390 111173596 -8571302 - L1ME1 LINE L1 -65 6101 5891 330 229 21 34 chr13 111173761 111173998 -8570900 + GA-rich Low_complexity Low_complexity 1 234 0 190 261 0 130 chr13 111174324 111174416 -8570482 + L2 LINE L2 3193 3272 0 216 0 0 0 chr13 111175065 111175089 -8569809 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 1303 243 34 36 chr13 111176219 111176635 -8568263 + MLT1C LTR MaLR 53 467 0 1124 254 92 23 chr13 111179739 111179896 -8565002 + MLT1C LTR MaLR 1 146 -321 13104 34 6 1 chr13 111179896 111182246 -8562652 - L1PA5 LINE L1 -1 6153 3794 1124 254 92 23 chr13 111182246 111182525 -8562373 + MLT1C LTR MaLR 146 467 0 201 368 39 39 chr13 111182698 111182853 -8562045 + L2 LINE L2 2720 2874 -440 2181 129 6 6 chr13 111182853 111183198 -8561700 - AluSx SINE Alu 0 345 1 396 0 0 0 chr13 111183819 111183863 -8561035 + (TG)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr13 111186865 111186903 -8557995 + (TA)n Simple_repeat Simple_repeat 2 39 0 201 405 8 38 chr13 111188171 111188302 -8556596 + MIR SINE MIR 57 183 -79 424 311 79 16 chr13 111188986 111189240 -8555658 + L1ME LINE L1 5458 5727 -394 5084 169 35 15 chr13 111189393 111189702 -8555196 + L1MA4 LINE L1 4976 5277 -1023 2186 138 28 6 chr13 111189702 111190058 -8554840 + THE1B LTR MaLR 1 364 0 5084 169 35 15 chr13 111190058 111190559 -8554339 + L1MA4 LINE L1 5277 5766 -534 216 0 0 0 chr13 111190559 111190583 -8554315 + (CA)n Simple_repeat Simple_repeat 1 24 0 5084 169 35 15 chr13 111190583 111191053 -8553845 + L1MA4 LINE L1 5766 6287 -13 27 61 0 15 chr13 111191235 111191271 -8553627 + AT_rich Low_complexity Low_complexity 1 37 -28 2076 117 0 0 chr13 111191271 111191554 -8553344 + AluSg SINE Alu 1 283 -27 27 61 0 15 chr13 111191554 111191583 -8553315 + AT_rich Low_complexity Low_complexity 37 65 0 277 345 77 69 chr13 111193820 111194286 -8550612 + L2 LINE L2 1991 2460 -854 195 42 0 0 chr13 111194481 111194505 -8550393 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 197 350 51 34 chr13 111194756 111194873 -8550025 + MIR SINE MIR 20 138 -124 269 250 21 62 chr13 111195054 111195150 -8549748 + MER5A DNA MER1_type 98 189 0 227 232 18 18 chr13 111195283 111195339 -8549559 - L2 LINE L2 -43 3229 3174 414 318 133 21 chr13 111195832 111196162 -8548736 + L1ME4a LINE L1 5516 5882 -239 198 71 0 0 chr13 111196216 111196244 -8548654 + (TG)n Simple_repeat Simple_repeat 1 28 0 283 284 238 14 chr13 111199789 111199955 -8544943 + MIR SINE MIR 30 230 -32 1452 152 123 15 chr13 111200664 111200933 -8543965 + AluSg SINE Alu 1 298 -12 21 95 0 0 chr13 111201475 111201538 -8543360 + AT_rich Low_complexity Low_complexity 1 63 0 1869 121 21 31 chr13 111201685 111201806 -8543092 + AluSx SINE Alu 1 122 -190 186 43 0 0 chr13 111201806 111201829 -8543069 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1869 121 21 31 chr13 111201829 111202016 -8542882 + AluSx SINE Alu 122 312 0 636 176 0 0 chr13 111203049 111203151 -8541747 - AluJ/FLAM SINE Alu -210 102 1 3552 92 10 0 chr13 111203243 111203743 -8541155 + L1PA10 LINE L1 5653 6157 -11 264 247 13 13 chr13 111203776 111203853 -8541045 - LTR67 LTR ERVL -84 473 397 1803 158 55 17 chr13 111203993 111204354 -8540544 + THE1C LTR MaLR 1 375 0 2215 147 19 11 chr13 111204570 111204931 -8539967 - THE1B LTR MaLR 0 364 1 281 349 63 38 chr13 111205599 111205837 -8539061 + L2 LINE L2 2843 3086 -227 2538 44 14 0 chr13 111206534 111206829 -8538069 + AluY SINE Alu 1 299 -12 22 0 0 0 chr13 111207578 111207600 -8537298 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 111207609 111207637 -8537261 + AT_rich Low_complexity Low_complexity 1 28 0 2583 43 0 0 chr13 111208033 111208338 -8536560 + AluY SINE Alu 1 305 -6 23 0 0 0 chr13 111209227 111209250 -8535648 + AT_rich Low_complexity Low_complexity 1 23 0 2115 89 4 7 chr13 111211779 111212100 -8532798 - AluSg SINE Alu 0 320 1 186 354 38 0 chr13 111212175 111212254 -8532644 + MIR SINE MIR 47 128 -80 1938 118 63 38 chr13 111212760 111213126 -8531772 + THE1C LTR MaLR 1 375 0 1405 196 62 0 chr13 111213207 111213513 -8531385 + MLT1A1 LTR MaLR 1 325 -40 769 345 112 12 chr13 111214594 111215110 -8529788 - L3 LINE CR1 -536 1041 474 587 257 25 25 chr13 111215350 111215552 -8529346 - MER63A DNA MER1_type -2 208 7 271 343 34 75 chr13 111215737 111216029 -8528869 - L2 LINE L2 -1018 2296 2017 31 44 0 0 chr13 111216725 111216770 -8528128 + AT_rich Low_complexity Low_complexity 1 45 0 206 54 0 54 chr13 111217097 111217134 -8527764 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 183 80 0 0 chr13 111217688 111217713 -8527185 + (CA)n Simple_repeat Simple_repeat 2 26 0 403 315 22 43 chr13 111218601 111218672 -8526226 + MIR SINE MIR 50 121 -141 2664 14 0 0 chr13 111218672 111218968 -8525930 - AluY SINE Alu -15 296 1 403 315 22 43 chr13 111218968 111219080 -8525818 + MIR SINE MIR 121 229 -33 241 253 53 42 chr13 111219149 111219213 -8525685 - MIR SINE MIR -73 189 122 2002 89 96 0 chr13 111219213 111219484 -8525414 + AluSq SINE Alu 7 303 -10 241 253 53 42 chr13 111219484 111219514 -8525384 - MIR SINE MIR -140 122 94 232 314 40 48 chr13 111221158 111221282 -8523616 + L2 LINE L2 3158 3280 -33 493 309 29 0 chr13 111221332 111221468 -8523430 - L2 LINE L2 0 3313 3174 456 195 0 23 chr13 111221665 111221752 -8523146 + MER5A DNA MER1_type 103 187 -2 707 277 11 6 chr13 111221762 111221939 -8522959 - MER5B DNA MER1_type 0 178 1 469 267 87 12 chr13 111222331 111222503 -8522395 + MIR SINE MIR 60 244 -18 272 348 71 7 chr13 111222997 111223152 -8521746 + L2 LINE L2 3107 3271 -1 1646 178 34 7 chr13 111223250 111223542 -8521356 + AluJo SINE Alu 1 300 -12 204 237 288 17 chr13 111224785 111224823 -8520075 - MER5B DNA MER1_type -1 177 151 938 173 31 26 chr13 111224823 111225014 -8519884 + L1MC1 LINE L1 6141 6332 -1 204 237 288 17 chr13 111225014 111225093 -8519805 - MER5B DNA MER1_type -27 151 28 198 0 0 0 chr13 111225619 111225641 -8519257 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 186 143 0 0 chr13 111225932 111225960 -8518938 + L2 LINE L2 3277 3304 -9 306 0 0 0 chr13 111226646 111226680 -8518218 + (CA)n Simple_repeat Simple_repeat 2 35 0 1250 206 65 14 chr13 111227121 111227475 -8517423 + MER58D DNA MER1_type 9 380 -6 1872 136 42 45 chr13 111228480 111228862 -8516036 + MLT1B LTR MaLR 1 381 -9 249 420 9 0 chr13 111229114 111229226 -8515672 - MIR SINE MIR -58 150 38 24 0 0 0 chr13 111230568 111230592 -8514306 + AT_rich Low_complexity Low_complexity 1 24 0 2093 241 57 27 chr13 111231303 111231674 -8513224 + L1ME1 LINE L1 4985 5344 -822 2501 48 3 3 chr13 111231674 111231985 -8512913 + AluY SINE Alu 1 311 0 2093 241 57 27 chr13 111231985 111232577 -8512321 + L1ME1 LINE L1 5344 5981 -185 609 203 13 13 chr13 111232612 111232765 -8512133 + L1MA10 LINE L1 6180 6332 -2 526 288 229 0 chr13 111232768 111233039 -8511859 + L1MC4a LINE L1 5817 6149 -1659 1877 197 31 13 chr13 111233055 111233158 -8511740 + L1MB8 LINE L1 5719 5819 -359 2237 135 0 0 chr13 111233158 111233469 -8511429 + AluSx SINE Alu 2 312 0 1877 197 31 13 chr13 111233469 111233816 -8511082 + L1MB8 LINE L1 5819 6177 -1 21 36 0 0 chr13 111233869 111233897 -8511001 + AT_rich Low_complexity Low_complexity 1 28 0 1163 267 69 18 chr13 111235914 111236408 -8508490 - LTR40a LTR ERVL 0 519 1 2301 99 3 10 chr13 111237282 111237595 -8507303 - AluSp SINE Alu 0 313 3 1679 188 8 27 chr13 111238427 111238794 -8506104 + MER47A DNA MER2_type 7 366 0 185 239 109 0 chr13 111241041 111241087 -8503811 - MIR SINE MIR -15 247 197 2158 86 32 0 chr13 111242316 111242594 -8502304 + AluSx SINE Alu 1 287 -25 31 0 0 0 chr13 111242631 111242662 -8502236 + AT_rich Low_complexity Low_complexity 1 31 0 1978 83 15 4 chr13 111243194 111243458 -8501440 - AluY SINE Alu -4 307 41 356 265 194 5 chr13 111244537 111244733 -8500165 + L1ME LINE L1 2475 2707 -3439 410 288 116 48 chr13 111244788 111245548 -8499350 + L1ME LINE L1 2795 3662 -2484 2137 140 0 3 chr13 111245548 111245855 -8499043 - AluSx SINE Alu -6 306 1 410 288 116 48 chr13 111245855 111246178 -8498720 + L1ME LINE L1 3662 3962 -2184 1637 243 6 3 chr13 111246413 111246775 -8498123 - MLT1A1 LTR MaLR -2 363 1 479 273 78 7 chr13 111246778 111247059 -8497839 + L1ME LINE L1 5279 5581 -583 1482 112 48 0 chr13 111247086 111247292 -8497606 + AluSg/x SINE Alu 89 304 -8 491 188 42 0 chr13 111247647 111247743 -8497155 + MER5A DNA MER1_type 10 109 -80 212 370 65 0 chr13 111247895 111248003 -8496895 - L2 LINE L2 -3 3269 3155 453 66 0 0 chr13 111248003 111248017 -8496881 + (CA)n Simple_repeat Simple_repeat 1 75 0 453 66 0 0 chr13 111248017 111248078 -8496820 + (CA)n Simple_repeat Simple_repeat 2 62 0 1135 257 95 59 chr13 111248600 111248669 -8496229 - MER20B DNA MER1_type -55 728 663 2223 117 0 3 chr13 111248669 111248969 -8495929 + AluSq SINE Alu 1 299 -14 1135 257 95 59 chr13 111248969 111249595 -8495303 - MER20B DNA MER1_type -120 663 8 443 214 56 40 chr13 111249807 111249933 -8494965 - MER63 DNA MER1_type -76 760 7 300 27 0 0 chr13 111250177 111250214 -8494684 + (CA)n Simple_repeat Simple_repeat 2 38 0 322 307 55 31 chr13 111250850 111250977 -8493921 - MER5A DNA MER1_type -4 185 56 225 0 0 0 chr13 111251062 111251087 -8493811 + (A)n Simple_repeat Simple_repeat 1 25 0 3365 73 13 56 chr13 111251245 111251778 -8493120 + L1MA2 LINE L1 5795 6304 0 21 0 0 0 chr13 111252787 111252808 -8492090 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr13 111254505 111254535 -8490363 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 267 337 133 0 chr13 111254922 111255020 -8489878 + L2 LINE L2 3147 3257 -15 2501 31 0 0 chr13 111256603 111256890 -8488008 + AluY SINE Alu 1 287 -24 303 329 23 31 chr13 111257041 111257228 -8487670 - MIR SINE MIR -55 207 22 2109 126 3 19 chr13 111258139 111258456 -8486442 - AluSq SINE Alu -1 312 1 1168 204 49 8 chr13 111258777 111259042 -8485856 + MER63B DNA MER1_type 3 278 -158 604 192 0 15 chr13 111259066 111259196 -8485702 - AluJo SINE Alu -176 136 9 365 227 53 23 chr13 111259208 111259340 -8485558 + MER63B DNA MER1_type 291 426 -10 222 302 19 11 chr13 111259347 111259435 -8485463 + MIR SINE MIR 57 142 -66 2156 96 0 0 chr13 111259724 111260055 -8484843 - AluSg SINE Alu 0 331 1 218 352 80 50 chr13 111260588 111260642 -8484256 + L2 LINE L2 1597 1648 -1666 2248 106 0 10 chr13 111260642 111260945 -8483953 - AluSx SINE Alu -12 300 1 218 352 80 50 chr13 111260945 111261291 -8483607 + L2 LINE L2 1648 2009 -1305 240 344 98 45 chr13 111261371 111261862 -8483036 + L2 LINE L2 2264 2780 -534 238 146 0 18 chr13 111262260 111262315 -8482583 - L1MC4 LINE L1 -1340 6702 6649 1555 192 68 3 chr13 111263543 111263866 -8481032 - MER2 DNA MER2_type 0 344 1 201 323 123 63 chr13 111264064 111264380 -8480518 - L2 LINE L2 -337 2977 2643 236 311 57 9 chr13 111264474 111264580 -8480318 + MER5B DNA MER1_type 2 112 -66 256 200 0 36 chr13 111267330 111267385 -8477513 + L2 LINE L2 3219 3271 -1 2255 154 5 13 chr13 111268077 111268454 -8476444 - THE1C LTR MaLR -1 374 1 342 303 115 0 chr13 111268683 111268805 -8476093 + L2 LINE L2 3137 3272 0 228 340 80 28 chr13 111269745 111269995 -8474903 + L2 LINE L2 2545 2807 -507 377 252 26 35 chr13 111270001 111270116 -8474782 - L2 LINE L2 0 3313 3200 418 265 52 37 chr13 111270396 111270532 -8474366 + L2 LINE L2 3172 3309 -4 668 266 11 11 chr13 111270631 111270808 -8474090 - MIR SINE MIR 0 262 86 1076 204 32 104 chr13 111270876 111271279 -8473619 - MLT1A2 LTR MaLR 0 374 1 192 314 149 8 chr13 111271290 111271411 -8473487 - L2 LINE L2 -5 3308 3171 1333 149 56 0 chr13 111271548 111271763 -8473135 - MER30 DNA MER1_type 0 230 4 215 283 26 71 chr13 111272135 111272392 -8472506 - L2 LINE L2 -807 2507 2207 545 201 25 108 chr13 111274224 111274428 -8470470 + MER5A DNA MER1_type 1 187 -2 252 0 0 0 chr13 111275545 111275573 -8469325 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 222 328 0 3 chr13 111275824 111275898 -8469000 - MIR SINE MIR -69 139 78 657 286 56 39 chr13 111276439 111276851 -8468047 - MARNA DNA Mariner -125 461 43 225 180 20 0 chr13 111277165 111277215 -8467683 - HSMAR1 DNA Mariner 0 1287 1237 22 56 0 0 chr13 111277922 111277958 -8466940 + AT_rich Low_complexity Low_complexity 1 36 0 336 83 0 0 chr13 111277975 111278023 -8466875 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr13 111279017 111279039 -8465859 + AT_rich Low_complexity Low_complexity 1 22 0 1723 156 58 0 chr13 111279130 111279406 -8465492 + AluSg SINE Alu 1 292 -18 32 0 0 0 chr13 111280028 111280060 -8464838 + AT_rich Low_complexity Low_complexity 1 32 0 2925 65 10 0 chr13 111281567 111281951 -8462947 - L1PA10 LINE L1 -4 6164 5777 674 74 0 28 chr13 111281951 111282059 -8462839 + L1P LINE L1 5305 5409 -752 282 284 49 0 chr13 111282221 111282323 -8462575 + L1MC4 LINE L1 7789 7895 -147 423 0 0 0 chr13 111282387 111282434 -8462464 + (TG)n Simple_repeat Simple_repeat 2 48 0 407 195 49 16 chr13 111282446 111282569 -8462329 + L1MC4 LINE L1 7916 8042 0 681 290 154 43 chr13 111282581 111283154 -8461744 + L2 LINE L2 2454 3149 -164 997 246 14 5 chr13 111283154 111283374 -8461524 - MER58A DNA MER1_type -2 222 1 681 290 154 43 chr13 111283374 111283560 -8461338 + L2 LINE L2 3149 3313 0 195 415 70 0 chr13 111283654 111283796 -8461102 + L2 LINE L2 3121 3272 0 1049 318 38 68 chr13 111283918 111284491 -8460407 + L3 LINE CR1 1019 1574 -3 2300 88 3 0 chr13 111284715 111285009 -8459889 + AluSp SINE Alu 1 295 -18 217 276 81 87 chr13 111285122 111285307 -8459591 + L2 LINE L2 1295 1478 -1836 249 298 174 18 chr13 111285461 111285679 -8459219 + L2 LINE L2 2624 2875 -439 714 224 24 6 chr13 111285685 111285855 -8459043 - MLT1D LTR MaLR 0 505 333 618 272 148 40 chr13 111285974 111286298 -8458600 - L2 LINE L2 -887 2427 2069 1933 288 86 9 chr13 111286301 111287174 -8457724 - L2 LINE L2 -1540 1774 835 24 0 0 0 chr13 111287470 111287494 -8457404 + AT_rich Low_complexity Low_complexity 1 24 0 1576 176 0 39 chr13 111287764 111288071 -8456827 - AluJb SINE Alu -16 296 2 419 335 58 83 chr13 111289274 111289371 -8455527 - L2 LINE L2 -3 3269 3171 563 220 203 0 chr13 111289371 111289553 -8455345 + MER20 DNA MER1_type 1 219 0 419 335 58 83 chr13 111289553 111289900 -8454998 - L2 LINE L2 -101 3171 2836 1841 185 0 3 chr13 111290545 111290858 -8454040 + AluJo SINE Alu 1 312 0 460 139 13 0 chr13 111292554 111292633 -8452265 - MER116 DNA Mariner 0 80 1 206 0 0 65 chr13 111292995 111293026 -8451872 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 748 159 76 98 chr13 111294204 111294481 -8450417 - MLT1D LTR MaLR -180 325 55 228 357 77 74 chr13 111294543 111294868 -8450030 + L2 LINE L2 2922 3247 -25 2091 128 23 47 chr13 111296089 111296473 -8448425 - THE1C LTR MaLR 0 375 1 554 316 40 22 chr13 111296609 111296837 -8448061 - L3 LINE CR1 -718 859 628 2599 43 0 3 chr13 111297005 111297307 -8447591 - AluY SINE Alu -10 301 1 299 298 79 0 chr13 111297968 111298082 -8446816 - L3b LINE CR1 -117 1466 1344 194 260 20 0 chr13 111298091 111298141 -8446757 + L3b LINE CR1 1429 1479 -104 1911 181 105 13 chr13 111299223 111299597 -8445301 + MLT1D LTR MaLR 6 431 -74 2598 87 31 11 chr13 111299597 111299954 -8444944 + THE1B LTR MaLR 1 364 0 1911 181 105 13 chr13 111299954 111300037 -8444861 + MLT1D LTR MaLR 431 505 0 589 259 61 0 chr13 111300446 111300593 -8444305 + MER58A DNA MER1_type 2 157 0 406 243 0 0 chr13 111300597 111300700 -8444198 + MER58A DNA MER1_type 121 223 -1 330 267 122 58 chr13 111300707 111300879 -8444019 + MIR SINE MIR 23 205 -57 209 121 0 0 chr13 111301029 111301062 -8443836 + L2 LINE L2 3277 3309 -4 262 181 14 111 chr13 111301430 111301502 -8443396 - Tigger5 DNA MER2_type -1 2322 2258 303 242 15 0 chr13 111301508 111301574 -8443324 + Tigger5 DNA MER2_type 2250 2316 -7 361 174 0 14 chr13 111301576 111301645 -8443253 - Tigger5 DNA MER2_type -2244 79 12 291 346 69 30 chr13 111301946 111302137 -8442761 + MIR SINE MIR 30 228 -34 8122 123 15 20 chr13 111302221 111303524 -8441374 - HSMAR2 DNA Mariner -2 1300 4 551 252 5 29 chr13 111303625 111303831 -8441067 + L1ME1 LINE L1 5694 5894 -272 1512 211 20 22 chr13 111303837 111304193 -8440705 + MLT2D LTR ERVL 1 355 -59 363 281 0 0 chr13 111304216 111304305 -8440593 - L1MC4 LINE L1 -1339 6703 6615 343 300 0 0 chr13 111304232 111304322 -8440576 + L1MC4 LINE L1 6614 6703 -1339 * 489 234 59 53 chr13 111304377 111304621 -8440277 + L1ME1 LINE L1 5904 6162 -4 328 325 93 32 chr13 111305590 111305836 -8439062 + MIR SINE MIR 2 262 0 1940 98 4 0 chr13 111305944 111306190 -8438708 - AluSq SINE Alu -66 247 1 1163 234 5 93 chr13 111306211 111306609 -8438289 - MLT1A1 LTR MaLR -2 363 1 1908 179 0 3 chr13 111306737 111307050 -8437848 + AluSx SINE Alu 1 312 0 1245 176 154 73 chr13 111307801 111308131 -8436767 + MLT1A1 LTR MaLR 9 365 0 229 241 0 17 chr13 111308190 111308248 -8436650 + L2 LINE L2 3257 3313 0 207 0 0 0 chr13 111309539 111309562 -8435336 + (A)n Simple_repeat Simple_repeat 1 23 0 1928 202 46 52 chr13 111311171 111311802 -8433096 + LTR29 LTR ERV1 1 650 -3 798 201 19 0 chr13 111312272 111312431 -8432467 - MER45A DNA AcHobo -2 176 15 1037 218 41 20 chr13 111312634 111312927 -8431971 - MER39 LTR ERV1 0 707 409 1916 141 68 44 chr13 111312927 111313339 -8431559 - MSTA LTR MaLR 0 428 7 251 202 36 60 chr13 111313340 111313424 -8431474 - MER39 LTR ERV1 -289 418 337 294 188 43 14 chr13 111313996 111314065 -8430833 + MLT1K LTR MaLR 518 588 0 1069 145 121 43 chr13 111314162 111314369 -8430529 + AluJb SINE Alu 87 309 -3 204 247 14 14 chr13 111315550 111315623 -8429275 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 1833 147 29 11 chr13 111315964 111316268 -8428630 + AluSx SINE Alu 1 309 0 198 241 26 17 chr13 111316375 111316460 -8428438 + L2 LINE L2 2876 2959 -313 796 212 55 25 chr13 111316460 111316763 -8428135 - MER58B DNA MER1_type 0 341 1 376 312 139 40 chr13 111317231 111317496 -8427402 - L2 LINE L2 -4 3268 3031 180 0 0 0 chr13 111317496 111317516 -8427382 + (GA)n Simple_repeat Simple_repeat 2 21 0 2069 117 80 11 chr13 111317521 111317872 -8427026 + THE1C LTR MaLR 1 375 0 376 312 139 40 chr13 111317872 111317924 -8426974 - L2 LINE L2 -244 3028 2913 1836 311 69 33 chr13 111318281 111319444 -8425454 - L2 LINE L2 -1 3312 2110 228 135 0 0 chr13 111320355 111320392 -8424506 + (T)n Simple_repeat Simple_repeat 1 37 0 615 111 0 0 chr13 111321114 111321204 -8423694 - 5S rRNA rRNA -31 90 1 193 354 0 0 chr13 111323518 111323583 -8421315 + MIR SINE MIR 88 152 -56 180 0 0 0 chr13 111323637 111323657 -8421241 + (T)n Simple_repeat Simple_repeat 1 20 0 270 303 25 8 chr13 111323918 111324070 -8420828 + L1MC/D LINE L1 5467 5623 -547 2235 85 0 0 chr13 111324233 111324549 -8420349 + AluY SINE Alu 1 316 0 205 167 0 0 chr13 111325108 111325144 -8419754 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr13 111327284 111327305 -8417593 + (A)n Simple_repeat Simple_repeat 1 21 0 370 298 74 55 chr13 111328601 111329152 -8415746 + L1MC/D LINE L1 4906 5470 -747 6586 67 39 0 chr13 111329620 111331228 -8413670 - L1PA7 LINE L1 0 6154 4513 3860 95 0 2 chr13 111331228 111331796 -8413102 + L1P LINE L1 1691 2257 -3889 21 0 0 0 chr13 111331801 111331822 -8413076 + AT_rich Low_complexity Low_complexity 1 21 0 663 304 91 0 chr13 111331951 111332181 -8412717 - MIR SINE MIR 0 262 12 263 336 175 20 chr13 111332810 111333500 -8411398 + L2 LINE L2 1887 2683 -631 360 319 66 81 chr13 111333541 111334008 -8410890 + L2 LINE L2 2804 3263 -9 394 194 21 14 chr13 111334703 111334847 -8410051 + (TA)n Simple_repeat Simple_repeat 2 146 0 207 0 0 0 chr13 111335126 111335149 -8409749 + (A)n Simple_repeat Simple_repeat 1 23 0 316 317 89 11 chr13 111335738 111335918 -8408980 - MIR SINE MIR -24 238 45 347 283 76 123 chr13 111336270 111336652 -8408246 - L2 LINE L2 0 3272 2909 2066 141 0 0 chr13 111337324 111337621 -8407277 + AluSx SINE Alu 4 300 -12 21 0 0 0 chr13 111338557 111338578 -8406320 + AT_rich Low_complexity Low_complexity 1 21 0 232 297 69 0 chr13 111340360 111340461 -8404437 - L2 LINE L2 -15 3257 3150 288 50 33 50 chr13 111340552 111340612 -8404286 + (TAAAAA)n Simple_repeat Simple_repeat 2 60 0 712 248 69 60 chr13 111340707 111341026 -8403872 + L2 LINE L2 2937 3258 -55 295 303 51 69 chr13 111341490 111341665 -8403233 + MIR SINE MIR 51 222 -40 217 325 65 8 chr13 111341865 111341988 -8402910 - MIR SINE MIR -49 213 84 208 284 34 45 chr13 111342049 111342137 -8402761 - L2 LINE L2 0 3272 3186 309 310 46 41 chr13 111342578 111342775 -8402123 - L1ME4a LINE L1 -4 6117 5920 340 278 56 67 chr13 111342832 111343116 -8401782 - L1ME4a LINE L1 -339 5782 5502 383 314 147 47 chr13 111343759 111344160 -8400738 + L1MC4a LINE L1 4562 5002 -1144 418 295 100 100 chr13 111344326 111344845 -8400053 + MLT1G1 LTR MaLR 2 520 -35 249 369 26 20 chr13 111345004 111345199 -8399699 + MLT1G3-int LTR MaLR 293 488 -883 377 289 52 84 chr13 111345996 111346283 -8398615 + MLT1G3-int LTR MaLR 1028 1305 -66 585 267 102 48 chr13 111346367 111346874 -8398024 + MLT1G3 LTR MaLR 3 545 -10 228 35 0 0 chr13 111346885 111346914 -8397984 + (CA)n Simple_repeat Simple_repeat 2 30 0 498 261 117 88 chr13 111346982 111347037 -8397861 + L1MC4a LINE L1 5258 5310 -811 1855 107 67 27 chr13 111347037 111347372 -8397526 + AluSx SINE Alu 1 312 0 498 261 117 88 chr13 111347372 111347951 -8396947 + L1MC4a LINE L1 5310 5910 -211 180 0 0 0 chr13 111348184 111348204 -8396694 + (CA)n Simple_repeat Simple_repeat 1 20 0 506 238 15 4 chr13 111350560 111350744 -8394154 + MLT1K LTR MaLR 127 242 -346 418 308 34 0 chr13 111350714 111350831 -8394067 + MLT1K LTR MaLR 144 264 -324 * 246 288 0 0 chr13 111350883 111350942 -8393956 + MLT1K LTR MaLR 525 583 -5 2088 132 33 36 chr13 111351485 111351850 -8393048 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr13 111351871 111351901 -8392997 + AT_rich Low_complexity Low_complexity 1 30 0 268 368 156 22 chr13 111352097 111352725 -8392173 - L2 LINE L2 -428 2886 2175 749 299 9 26 chr13 111352795 111353026 -8391872 - MIR SINE MIR -35 227 1 22 35 0 0 chr13 111354136 111354165 -8390733 + AT_rich Low_complexity Low_complexity 1 29 0 2375 157 25 39 chr13 111354166 111354598 -8390300 + MSTB LTR MaLR 1 426 0 351 279 8 31 chr13 111354969 111355098 -8389800 + MLT1L LTR MaLR 102 227 -388 5339 82 6 29 chr13 111355145 111355929 -8388969 + L1PB1 LINE L1 5386 6151 0 26 50 0 0 chr13 111355929 111355969 -8388929 + AT_rich Low_complexity Low_complexity 1 40 0 3833 185 24 59 chr13 111358001 111358986 -8385912 + L1MA5 LINE L1 1377 2327 -4462 1886 76 8 0 chr13 111359015 111359264 -8385634 + L1PA7 LINE L1 5900 6150 -4 7629 190 61 12 chr13 111359277 111362317 -8382581 + L1MA5 LINE L1 3713 6942 0 1981 159 3 0 chr13 111362552 111362847 -8382051 - AluSx SINE Alu -16 296 1 2597 256 42 21 chr13 111364503 111365271 -8379627 - MER21B LTR ERV1 -61 802 19 382 204 0 86 chr13 111365278 111365371 -8379527 - MER21B LTR ERV1 -767 96 12 277 234 104 0 chr13 111365664 111365741 -8379157 - L1ME3 LINE L1 -1 6161 6077 721 123 8 8 chr13 111365861 111365991 -8378907 + (TTCC)n Simple_repeat Simple_repeat 3 132 0 1006 206 211 20 chr13 111366274 111366681 -8378217 + Charlie4a DNA MER1_type 24 508 0 200 327 109 9 chr13 111366686 111366796 -8378102 - L3 LINE CR1 -120 1457 1337 2240 93 20 0 chr13 111367269 111367571 -8377327 + AluSp SINE Alu 4 311 -2 2112 112 0 7 chr13 111368661 111368997 -8375901 + AluSx SINE Alu 2 335 0 5401 151 15 14 chr13 111369415 111371040 -8373858 - L1PB3 LINE L1 -1 6153 4529 445 200 96 26 chr13 111371304 111371419 -8373479 + MLT1B LTR MaLR 3 125 -265 1899 175 55 38 chr13 111371445 111371867 -8373031 - MSTB1 LTR MaLR -3 429 1 850 211 0 39 chr13 111372029 111372209 -8372689 - AluJo SINE Alu -16 296 124 182 128 26 0 chr13 111375646 111375685 -8369213 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 243 0 0 0 chr13 111375921 111375948 -8368950 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 351 0 0 0 chr13 111375947 111375986 -8368912 + (GA)n Simple_repeat Simple_repeat 2 40 0 185 254 48 32 chr13 111376206 111376269 -8368629 - L3b LINE CR1 -131 1452 1389 454 245 13 0 chr13 111376699 111376850 -8368048 + GA-rich Low_complexity Low_complexity 3 155 0 294 67 0 44 chr13 111376856 111376901 -8367997 - MADE1 DNA Mariner -37 43 1 42912 32 24 1 chr13 111379279 111385294 -8359604 + L1PA2 LINE L1 1 6155 0 207 0 0 0 chr13 111386057 111386080 -8358818 + (A)n Simple_repeat Simple_repeat 1 23 0 203 289 67 58 chr13 111386682 111386786 -8358112 - MIR SINE MIR -71 191 87 23 33 0 0 chr13 111387198 111387228 -8357670 + AT_rich Low_complexity Low_complexity 1 30 0 252 0 0 0 chr13 111387406 111387434 -8357464 + (A)n Simple_repeat Simple_repeat 1 28 0 353 352 15 30 chr13 111388457 111388656 -8356242 + L2 LINE L2 2172 2367 -947 896 225 21 0 chr13 111389460 111389647 -8355251 + MIR SINE MIR 18 208 -54 261 0 0 0 chr13 111390286 111390315 -8354583 + (CA)n Simple_repeat Simple_repeat 1 29 0 276 81 0 0 chr13 111391311 111391348 -8353550 + THE1B LTR MaLR 150 186 -178 29 0 0 0 chr13 111392659 111392688 -8352210 + AT_rich Low_complexity Low_complexity 1 29 0 413 288 113 59 chr13 111392817 111393137 -8351761 - L1MC4a LINE L1 -1909 5899 5563 1985 123 3 55 chr13 111393380 111393706 -8351192 + AluSx SINE Alu 1 309 -3 573 293 44 31 chr13 111395075 111395300 -8349598 - MIR SINE MIR -23 239 12 185 309 147 0 chr13 111395490 111395558 -8349340 + MIR3 SINE MIR 108 185 -23 261 255 128 10 chr13 111396204 111396306 -8348592 + L2 LINE L2 3158 3271 -1 23 0 0 0 chr13 111396519 111396542 -8348356 + AT_rich Low_complexity Low_complexity 1 23 0 279 294 12 0 chr13 111396700 111396785 -8348113 + L2 LINE L2 3228 3313 0 2534 60 0 0 chr13 111396978 111397280 -8347618 + AluY SINE Alu 1 302 -9 342 231 179 0 chr13 111397300 111397417 -8347481 - L2 LINE L2 -896 2418 2281 220 271 0 0 chr13 111397622 111397670 -8347228 + (CA)n Simple_repeat Simple_repeat 1 48 0 27 0 0 0 chr13 111398805 111398832 -8346066 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 111399492 111399517 -8345381 + AT_rich Low_complexity Low_complexity 1 25 0 377 313 49 12 chr13 111399523 111399686 -8345212 + MIR3 SINE MIR 36 204 -4 212 0 36 0 chr13 111400053 111400081 -8344817 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2348 94 7 0 chr13 111402008 111402315 -8342583 - AluSc SINE Alu 0 309 1 270 323 21 21 chr13 111403690 111403786 -8341112 - L2 LINE L2 -17 3255 3160 272 329 70 35 chr13 111403817 111403960 -8340938 + MIR SINE MIR 20 167 -95 21 0 0 0 chr13 111404283 111404304 -8340594 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr13 111405049 111405078 -8339820 + (TG)n Simple_repeat Simple_repeat 2 30 0 495 143 0 0 chr13 111405533 111405610 -8339288 + AluSg/x SINE Alu 210 286 -26 528 16 0 0 chr13 111405610 111405671 -8339227 + (TA)n Simple_repeat Simple_repeat 2 62 0 200 325 12 0 chr13 111406062 111406145 -8338753 + MIR SINE MIR 70 153 -109 758 282 40 50 chr13 111406171 111406568 -8338330 + MLT1I LTR MaLR 17 409 0 1040 163 5 5 chr13 111406602 111406792 -8338106 + L1PA14 LINE L1 5958 6147 -14 4516 127 25 35 chr13 111408904 111409721 -8335177 + L1MA5A LINE L1 5480 6287 -10 539 227 32 5 chr13 111409954 111410134 -8334764 + MLT1H1 LTR MaLR 7 237 -312 423 128 0 0 chr13 111411429 111411515 -8333383 + (TA)n Simple_repeat Simple_repeat 2 87 0 1933 148 3 0 chr13 111411533 111411816 -8333082 - AluSx SINE Alu -28 284 1 904 145 0 0 chr13 111414057 111414188 -8330710 + FLAM_C SINE Alu 1 131 -12 2577 129 11 32 chr13 111414317 111414760 -8330138 + MER57B LTR ERV1 1 434 0 626 293 165 8 chr13 111414831 111415200 -8329698 + Zaphod DNA AcHobo 1 427 -3604 366 196 70 30 chr13 111415418 111415617 -8329281 + Zaphod DNA AcHobo 764 970 -3061 790 258 132 16 chr13 111415629 111416009 -8328889 + Zaphod DNA AcHobo 3595 4018 -13 351 228 39 24 chr13 111416130 111416257 -8328641 - Charlie2a DNA MER1_type -18 2844 2716 243 313 19 25 chr13 111416260 111416420 -8328478 - Charlie2a DNA MER1_type -1202 1660 1502 1869 157 3 17 chr13 111416423 111416723 -8328175 + AluJb SINE Alu 1 296 -16 476 16 16 0 chr13 111416800 111416861 -8328037 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 373 281 0 0 chr13 111416861 111416975 -8327923 - Charlie2b DNA MER1_type -2113 669 556 267 264 56 16 chr13 111417090 111417215 -8327683 - Charlie2b DNA MER1_type -2574 208 79 1991 114 3 30 chr13 111418488 111418787 -8326111 - AluSx SINE Alu -21 291 1 390 291 176 9 chr13 111419286 111419496 -8325402 + MIR SINE MIR 8 252 -10 379 62 250 0 chr13 111419609 111419673 -8325225 + MADE1 DNA Mariner 1 80 0 226 88 0 0 chr13 111420642 111420676 -8324222 + HSMAR1 DNA Mariner 1 34 -1253 531 294 158 26 chr13 111421201 111421626 -8323272 - L3 LINE CR1 -14 1563 1083 534 294 86 37 chr13 111421664 111421909 -8322989 + MIR SINE MIR 6 262 0 258 275 0 0 chr13 111423453 111423522 -8321376 + MIR SINE MIR 136 204 -58 318 291 86 17 chr13 111423784 111423901 -8320997 + MIR SINE MIR 29 153 -109 265 201 71 136 chr13 111424912 111425081 -8319817 - LTR28 LTR ERV1 -15 1005 848 233 111 0 0 chr13 111425108 111425144 -8319754 - MER52C LTR ERV1 -64 1214 1179 * 965 249 131 8 chr13 111425113 111425528 -8319370 - LTR1B LTR ERV1 -333 493 28 665 223 148 68 chr13 111425604 111426031 -8318867 + MLT1C LTR MaLR 6 466 -1 254 364 53 20 chr13 111426951 111427102 -8317796 - L1MC/D LINE L1 -2165 5643 5488 197 143 0 20 chr13 111427151 111427200 -8317698 + (TTTTTG)n Simple_repeat Simple_repeat 6 53 0 200 294 98 93 chr13 111427910 111428328 -8316570 + L2 LINE L2 2845 3264 -8 283 338 120 73 chr13 111429129 111429570 -8315328 + L2 LINE L2 2811 3272 0 24 32 0 0 chr13 111431100 111431131 -8313767 + AT_rich Low_complexity Low_complexity 1 31 0 1567 160 19 4 chr13 111431286 111431548 -8313350 + AluJo SINE Alu 21 286 -26 195 42 0 0 chr13 111431558 111431582 -8313316 + (CAATA)n Simple_repeat Simple_repeat 2 25 0 225 0 0 0 chr13 111432592 111432617 -8312281 + (A)n Simple_repeat Simple_repeat 1 25 0 641 242 91 2 chr13 111434246 111434416 -8310482 + MER5A DNA MER1_type 1 176 -2 3636 170 3 23 chr13 111434516 111434795 -8310103 + L1MA7 LINE L1 5559 5842 -449 2367 67 3 0 chr13 111434795 111435094 -8309804 + AluY SINE Alu 1 300 -11 3636 170 3 23 chr13 111435094 111435562 -8309336 + L1MA7 LINE L1 5842 6291 0 481 313 103 65 chr13 111435944 111436343 -8308555 + L2 LINE L2 2900 3313 0 468 316 118 17 chr13 111436989 111437226 -8307672 + MIR SINE MIR 2 262 0 1764 160 17 0 chr13 111437705 111437998 -8306900 + AluSx SINE Alu 1 298 -14 2410 90 0 0 chr13 111438425 111438735 -8306163 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr13 111439517 111439545 -8305353 + AT_rich Low_complexity Low_complexity 1 28 0 190 300 0 33 chr13 111439981 111440041 -8304857 + L3 LINE CR1 1518 1575 -2 1234 123 0 9 chr13 111440909 111441120 -8303778 + L1 LINE L1 2279 2487 -3659 14083 142 14 6 chr13 111446687 111447525 -8297373 + Tigger1 DNA MER2_type 8 838 -1580 2152 111 3 3 chr13 111447525 111447653 -8297245 + AluSq SINE Alu 1 128 -185 288 70 0 0 chr13 111447653 111447696 -8297202 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2152 111 3 3 chr13 111447696 111447864 -8297034 + AluSq SINE Alu 127 297 -16 14083 142 14 6 chr13 111447864 111449415 -8295483 + Tigger1 DNA MER2_type 838 2417 -1 362 284 104 0 chr13 111449416 111449550 -8295348 - MIR SINE MIR -64 198 51 190 319 59 76 chr13 111449949 111450068 -8294830 - L2 LINE L2 -24 3248 3132 441 274 86 11 chr13 111450556 111450742 -8294156 + MIR SINE MIR 20 219 -43 787 194 20 151 chr13 111450743 111451201 -8293697 - MLT1D LTR MaLR -107 398 1 291 28 0 0 chr13 111451335 111451371 -8293527 + (CA)n Simple_repeat Simple_repeat 2 37 0 559 146 49 98 chr13 111452157 111452321 -8292577 - MER106B DNA MER1_type -2 1057 902 216 35 35 0 chr13 111452426 111452455 -8292443 - MIR SINE MIR -14 248 219 553 291 46 46 chr13 111453887 111454124 -8290774 + MIR SINE MIR 21 257 -5 649 164 0 49 chr13 111454702 111454824 -8290074 + FLAM_C SINE Alu 3 118 -25 241 296 45 34 chr13 111455175 111455263 -8289635 - L2 LINE L2 -33 3280 3192 2094 176 2 42 chr13 111455275 111455706 -8289192 - MLT2D LTR ERVL 0 414 1 233 321 105 36 chr13 111455858 111456135 -8288763 - L2 LINE L2 -417 2897 2602 417 252 0 0 chr13 111456191 111456294 -8288604 - MER58A DNA MER1_type -16 208 106 1578 147 9 0 chr13 111456294 111456526 -8288372 + AluSq SINE Alu 1 234 -79 820 124 6 30 chr13 111456547 111456716 -8288182 + (GGAA)n Simple_repeat Simple_repeat 4 168 0 186 43 0 0 chr13 111456745 111456768 -8288130 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 432 248 0 58 chr13 111456768 111456882 -8288016 - MER58A DNA MER1_type -227 114 6 399 333 113 28 chr13 111456953 111457344 -8287554 - L2 LINE L2 -909 2405 1982 35 41 0 0 chr13 111457742 111457791 -8287107 + AT_rich Low_complexity Low_complexity 1 49 0 28 48 0 0 chr13 111458634 111458676 -8286222 + AT_rich Low_complexity Low_complexity 1 42 0 223 85 43 0 chr13 111459423 111459470 -8285428 + A-rich Low_complexity Low_complexity 2 50 0 851 229 6 0 chr13 111459598 111459768 -8285130 - FAM SINE Alu -4 171 1 189 171 0 0 chr13 111461058 111461093 -8283805 + (TG)n Simple_repeat Simple_repeat 2 36 0 473 314 82 29 chr13 111462650 111462857 -8282041 + MIR SINE MIR 21 238 -24 378 267 57 0 chr13 111462884 111462984 -8281914 + Charlie1a DNA MER1_type 14 119 -1336 1864 133 153 6 chr13 111462984 111463344 -8281554 + MSTA LTR MaLR 1 413 -15 1239 231 12 38 chr13 111463348 111463668 -8281230 + Charlie1a DNA MER1_type 115 426 -1029 1480 181 71 15 chr13 111463716 111464109 -8280789 + Charlie1a DNA MER1_type 850 1264 -191 1694 205 29 5 chr13 111464528 111464909 -8279989 + MLT1B LTR MaLR 1 390 0 1189 272 67 76 chr13 111465735 111466074 -8278824 + L2 LINE L2 2363 2704 -609 3038 130 26 36 chr13 111466074 111466606 -8278292 + MER1A DNA MER1_type 1 527 0 1189 272 67 76 chr13 111466606 111467222 -8277676 + L2 LINE L2 2704 3306 -7 2008 146 0 13 chr13 111467223 111467539 -8277359 + AluJb SINE Alu 1 312 0 1694 42 5 9 chr13 111468198 111468414 -8276484 - L1PA5 LINE L1 0 6154 5940 1164 196 3 78 chr13 111468920 111469226 -8275672 + MLT1B LTR MaLR 1 283 -107 677 237 11 17 chr13 111469232 111469409 -8275489 + L1PB4 LINE L1 5980 6155 -1 745 131 41 0 chr13 111469409 111469531 -8275367 + MLT1B LTR MaLR 260 386 -4 1375 259 46 67 chr13 111469545 111470534 -8274364 + L1MEc LINE L1 1453 2383 -3832 557 233 56 0 chr13 111470638 111470818 -8274080 + L1ME2 LINE L1 5974 6163 -1 583 237 78 42 chr13 111470831 111471189 -8273709 + L1MC5 LINE L1 7519 7889 -72 282 309 61 13 chr13 111472049 111472279 -8272619 + L1MC5 LINE L1 7258 7498 -463 1334 164 55 15 chr13 111472554 111472995 -8271903 - MER51A LTR ERV1 -16 618 1 752 215 81 103 chr13 111473016 111473303 -8271595 + MLT1D LTR MaLR 1 274 -231 9791 56 6 4 chr13 111473303 111475343 -8269555 + L1PA6 LINE L1 4107 6154 0 752 215 81 103 chr13 111475343 111475571 -8269327 + MLT1D LTR MaLR 274 505 0 1601 192 45 17 chr13 111477771 111478063 -8266835 + AluJo SINE Alu 1 300 -12 24 32 0 0 chr13 111478158 111478189 -8266709 + AT_rich Low_complexity Low_complexity 1 31 0 246 352 66 6 chr13 111478382 111478697 -8266201 + L1MC/D LINE L1 5369 5711 -605 2240 111 0 0 chr13 111478738 111479035 -8265863 + AluSx SINE Alu 1 297 -15 259 260 90 10 chr13 111479493 111479593 -8265305 + LTR33 LTR ERVL 111 218 -303 2172 204 59 35 chr13 111479612 111480220 -8264678 - MER92B LTR ERV1 -13 623 1 1186 181 36 5 chr13 111482519 111482740 -8262158 + AluJo SINE Alu 72 299 -13 291 273 41 27 chr13 111483003 111483202 -8261696 - MLT1G1 LTR MaLR -352 243 1 421 204 83 116 chr13 111484964 111485180 -8259718 - MER63A DNA MER1_type 0 210 2 382 272 103 15 chr13 111485193 111485329 -8259569 - MIR SINE MIR -20 242 95 511 340 83 17 chr13 111485419 111485660 -8259238 - L3 LINE CR1 -8 1569 1313 375 248 174 50 chr13 111485913 111486074 -8258824 + MER5A DNA MER1_type 9 189 0 2138 141 0 0 chr13 111486281 111486585 -8258313 + AluSx SINE Alu 1 304 -8 2318 141 86 5 chr13 111487468 111487864 -8257034 + MSTA LTR MaLR 1 428 0 9285 163 26 12 chr13 111487864 111489492 -8255406 + MSTA-int LTR MaLR 1 1651 0 2346 120 92 5 chr13 111489492 111489884 -8255014 + MSTA LTR MaLR 1 426 -2 809 182 42 0 chr13 111489898 111490063 -8254835 - MLT1B LTR MaLR -217 173 2 376 310 28 42 chr13 111490065 111490278 -8254620 - MIR SINE MIR -30 232 23 256 266 146 52 chr13 111490480 111490672 -8254226 - MER63A DNA MER1_type 0 210 1 1860 140 30 3 chr13 111491104 111491404 -8253494 - AluSx SINE Alu -4 308 1 258 81 0 0 chr13 111491607 111491644 -8253254 + (T)n Simple_repeat Simple_repeat 1 37 0 511 339 47 21 chr13 111492104 111492340 -8252558 - MIR SINE MIR 0 262 21 23 54 0 0 chr13 111493282 111493319 -8251579 + AT_rich Low_complexity Low_complexity 1 37 0 28 71 0 0 chr13 111493475 111493531 -8251367 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr13 111493538 111493559 -8251339 + AT_rich Low_complexity Low_complexity 1 21 0 479 292 29 99 chr13 111494364 111494463 -8250435 - L2 LINE L2 -1229 2085 1981 1837 149 76 0 chr13 111494463 111494751 -8250147 + AluSx SINE Alu 1 310 -2 479 292 29 99 chr13 111494751 111494963 -8249935 - L2 LINE L2 -1333 1981 1796 2649 216 21 10 chr13 111496727 111497003 -8247895 + L1MB4 LINE L1 5551 5822 -358 4478 132 66 19 chr13 111497003 111497792 -8247106 - LTR1B LTR ERV1 0 826 1 2649 216 21 10 chr13 111497792 111498132 -8246766 + L1MB4 LINE L1 5822 6174 -6 22 70 0 0 chr13 111499309 111499352 -8245546 + AT_rich Low_complexity Low_complexity 1 43 0 1243 163 0 0 chr13 111500056 111500246 -8244652 - AluJb SINE Alu -16 296 107 234 250 0 0 chr13 111500253 111500305 -8244593 - AluJo SINE Alu -145 157 106 * 237 250 0 29 chr13 111500295 111500363 -8244535 - AluJo SINE Alu -131 171 106 913 156 17 29 chr13 111500411 111500584 -8244314 - AluJb SINE Alu -141 171 1 354 78 0 0 chr13 111501520 111501571 -8243327 - MADE1 DNA Mariner 0 80 30 490 250 10 0 chr13 111503425 111503529 -8241369 + MER5A DNA MER1_type 66 170 -19 2246 134 46 5 chr13 111503872 111504267 -8240631 + MSTA LTR MaLR 18 428 0 515 315 143 5 chr13 111505012 111505228 -8239670 - MIR SINE MIR -10 252 7 543 299 86 14 chr13 111505592 111505870 -8239028 + L1MEc LINE L1 61 358 -6038 315 322 20 50 chr13 111505860 111506261 -8238637 + L1MEc LINE L1 1195 1583 -4813 * 1233 187 64 126 chr13 111506275 111506667 -8238231 + L1MEc LINE L1 1850 2188 -4208 2133 122 3 0 chr13 111506667 111506953 -8237945 + AluSx SINE Alu 14 300 -12 1233 187 64 126 chr13 111506953 111507213 -8237685 + L1MEc LINE L1 2188 2462 -3934 327 329 108 6 chr13 111507213 111507371 -8237527 + L1M4c LINE L1 1299 1472 -4912 193 337 116 21 chr13 111507513 111507608 -8237290 - L2 LINE L2 -494 2820 2717 209 324 157 20 chr13 111508398 111508500 -8236398 + MIR3 SINE MIR 40 155 -53 458 266 120 0 chr13 111509018 111509176 -8235722 - MIR SINE MIR -17 245 69 1903 118 15 0 chr13 111512173 111512444 -8232454 + AluSx SINE Alu 24 298 -14 292 236 56 0 chr13 111513738 111513810 -8231088 - MER91C DNA MER1_type -64 76 1 204 200 0 0 chr13 111517593 111517633 -8227265 + GA-rich Low_complexity Low_complexity 2 41 0 31 26 0 0 chr13 111517688 111517726 -8227172 + AT_rich Low_complexity Low_complexity 1 38 0 188 111 74 0 chr13 111517794 111517848 -8227050 + (TA)n Simple_repeat Simple_repeat 2 59 0 1151 179 58 0 chr13 111517909 111518132 -8226766 + MER46A DNA MER2_type 1 236 0 3983 157 16 21 chr13 111518244 111519034 -8225864 + L1MC2 LINE L1 5559 6344 0 1727 200 33 18 chr13 111520030 111520420 -8224478 + MSTD LTR MaLR 1 396 0 181 204 23 0 chr13 111521186 111521230 -8223668 + MIR SINE MIR 150 194 -68 1440 194 25 69 chr13 111522043 111522143 -8222755 + MLT1B LTR MaLR 1 104 -286 2248 124 0 3 chr13 111522143 111522457 -8222441 - AluSq SINE Alu 0 313 1 1440 194 25 69 chr13 111522457 111522764 -8222134 + MLT1B LTR MaLR 104 390 0 566 278 58 40 chr13 111523781 111523904 -8220994 - LTR33 LTR ERVL -65 456 337 2149 123 19 45 chr13 111523904 111524278 -8220620 + THE1B LTR MaLR 1 364 0 566 278 58 40 chr13 111524278 111524550 -8220348 - LTR33 LTR ERVL -184 337 54 2140 228 99 14 chr13 111524802 111525518 -8219380 + MER97a DNA MER1_type? 24 800 -94 1541 101 24 2 chr13 111526515 111526816 -8218082 - THE1A LTR MaLR 0 355 1 2247 129 0 3 chr13 111526868 111527179 -8217719 - AluSx SINE Alu -2 310 1 240 137 0 0 chr13 111527765 111527816 -8217082 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 225 0 0 0 chr13 111528353 111528378 -8216520 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 352 282 53 23 chr13 111529492 111529623 -8215275 + L2 LINE L2 3133 3267 -5 235 244 78 22 chr13 111530475 111530565 -8214333 - MLT1L LTR MaLR -520 95 1 459 184 48 27 chr13 111530776 111530923 -8213975 + L1M4 LINE L1 3741 3890 -2256 482 297 6 42 chr13 111531010 111531175 -8213723 - MER8 DNA MER2_type -78 161 3 704 250 24 10 chr13 111531325 111531533 -8213365 + L1M4 LINE L1 4015 4225 -1921 359 299 126 31 chr13 111531731 111532176 -8212722 - L1MC/D LINE L1 -2056 5752 5266 229 179 0 30 chr13 111532899 111532966 -8211932 + (TATG)n Simple_repeat Simple_repeat 2 66 0 24 32 0 0 chr13 111535595 111535626 -8209272 + AT_rich Low_complexity Low_complexity 1 31 0 181 337 108 49 chr13 111536434 111536778 -8208120 + L2 LINE L2 2394 2757 -557 204 302 99 66 chr13 111536883 111537095 -8207803 + L2 LINE L2 2899 3117 -155 882 155 0 7 chr13 111537411 111537553 -8207345 - AluJb SINE Alu -171 141 1 247 278 80 26 chr13 111538076 111538227 -8206671 - MIR SINE MIR -46 216 58 192 125 0 0 chr13 111539371 111539403 -8205495 + (CA)n Simple_repeat Simple_repeat 1 32 0 393 198 28 9 chr13 111539796 111539902 -8204996 + MER81 DNA DNA 6 113 -1 1686 194 7 0 chr13 111540159 111540458 -8204440 - AluJo SINE Alu -11 301 1 477 241 35 6 chr13 111540485 111540659 -8204239 + MER20 DNA MER1_type 41 219 0 2435 61 0 0 chr13 111541281 111541577 -8203321 - AluY SINE Alu -15 296 1 1856 148 35 0 chr13 111541586 111541876 -8203022 - AluSx SINE Alu -12 300 1 180 342 120 19 chr13 111542962 111543023 -8201875 + MIR SINE MIR 14 67 -195 1494 213 19 25 chr13 111543023 111543390 -8201508 + MLT1A1 LTR MaLR 1 365 0 180 342 120 19 chr13 111543390 111543486 -8201412 + MIR SINE MIR 67 187 -75 636 273 87 6 chr13 111543686 111543869 -8201029 - MIR3 SINE MIR -7 201 4 1094 204 161 55 chr13 111544340 111544669 -8200229 + MLT1A1 LTR MaLR 1 364 -1 814 83 0 33 chr13 111545094 111545215 -8199683 + AluY SINE Alu 176 292 -19 399 262 36 71 chr13 111545563 111545731 -8199167 + MIR SINE MIR 56 217 -45 275 233 70 12 chr13 111546225 111546311 -8198587 - MIR3 SINE MIR -54 154 64 2779 127 19 60 chr13 111546754 111547235 -8197663 - MLT2C2 LTR ERVL -3 461 1 233 300 0 9 chr13 111547417 111547527 -8197371 - MIR SINE MIR -26 236 128 21 0 0 0 chr13 111547793 111547814 -8197084 + AT_rich Low_complexity Low_complexity 1 21 0 632 276 195 29 chr13 111549368 111549842 -8195056 + MLT1H1 LTR MaLR 24 547 -8 1135 141 19 19 chr13 111549889 111550102 -8194796 + L1MA4 LINE L1 6086 6298 -2 258 208 19 0 chr13 111553816 111553869 -8191029 - MER94 DNA DNA -2 132 79 209 132 26 0 chr13 111553922 111553960 -8190938 + (TAA)n Simple_repeat Simple_repeat 1 39 0 375 198 40 63 chr13 111553990 111554043 -8190855 + L1MC4 LINE L1 7918 7971 -71 1597 220 87 42 chr13 111554043 111554111 -8190787 - MLT1D LTR MaLR -2 503 440 2102 147 0 7 chr13 111554111 111554418 -8190480 - AluSx SINE Alu -7 305 1 1597 220 87 42 chr13 111554418 111554830 -8190068 - MLT1D LTR MaLR -65 440 1 375 198 40 63 chr13 111554830 111554902 -8189996 + L1MC4 LINE L1 7971 8040 -2 21 0 0 0 chr13 111555264 111555285 -8189613 + AT_rich Low_complexity Low_complexity 1 21 0 2165 45 0 0 chr13 111556588 111556831 -8188067 - L1PA3 LINE L1 -3 6152 5910 26 30 0 0 chr13 111556970 111557003 -8187895 + AT_rich Low_complexity Low_complexity 1 33 0 184 183 17 33 chr13 111557384 111557444 -8187454 + CT-rich Low_complexity Low_complexity 2 60 0 225 237 54 21 chr13 111557528 111557621 -8187277 - LTR14 LTR ERVK -227 321 226 1456 134 65 40 chr13 111557980 111558255 -8186643 + AluJo SINE Alu 1 282 -30 210 37 0 0 chr13 111558258 111558285 -8186613 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2227 177 58 0 chr13 111558569 111558999 -8185899 - MLT1C LTR MaLR -12 455 1 2371 167 26 112 chr13 111559038 111559644 -8185254 + MLT2B3 LTR ERVL 1 554 0 2313 123 27 33 chr13 111560466 111560831 -8184067 - THE1B LTR MaLR -1 363 1 988 226 36 0 chr13 111561001 111561196 -8183702 - MLT1A1 LTR MaLR -2 363 162 2588 31 0 0 chr13 111561216 111561505 -8183393 - AluY SINE Alu -12 299 11 1985 116 0 60 chr13 111561722 111562041 -8182857 + AluSx SINE Alu 13 312 0 5518 101 11 1 chr13 111562099 111562862 -8182036 - L1PA14 LINE L1 0 6161 5392 375 132 0 0 chr13 111563609 111563677 -8181221 + (TA)n Simple_repeat Simple_repeat 2 69 0 396 165 0 0 chr13 111563778 111563869 -8181029 + (TA)n Simple_repeat Simple_repeat 2 92 0 23 0 0 0 chr13 111566598 111566621 -8178277 + AT_rich Low_complexity Low_complexity 1 23 0 303 28 0 0 chr13 111568418 111568454 -8176444 + (TG)n Simple_repeat Simple_repeat 1 36 0 255 61 0 0 chr13 111569128 111569161 -8175737 + (CA)n Simple_repeat Simple_repeat 2 34 0 199 341 73 0 chr13 111569949 111570031 -8174867 - L2 LINE L2 -17 3255 3168 685 176 195 6 chr13 111570412 111570571 -8174327 + MER5A DNA MER1_type 1 189 0 532 205 0 108 chr13 111570673 111570839 -8174059 + MER5B DNA MER1_type 1 148 -30 1672 127 4 4 chr13 111573732 111573977 -8170921 - L1PB1 LINE L1 -4 6147 5903 3476 59 11 0 chr13 111573978 111574420 -8170478 - L1PB1 LINE L1 -425 5726 5280 763 268 86 47 chr13 111574888 111575272 -8169626 + MLT1D LTR MaLR 1 399 -106 2039 145 0 0 chr13 111575607 111575911 -8168987 + AluSx SINE Alu 1 304 -8 548 208 26 37 chr13 111575992 111576149 -8168749 + MLT1D LTR MaLR 235 497 -8 1657 190 99 33 chr13 111577027 111577391 -8167507 - MLT1B LTR MaLR -2 388 1 1959 109 46 3 chr13 111577441 111577724 -8167174 + AluY SINE Alu 1 295 -16 534 338 122 30 chr13 111578265 111578739 -8166159 - L3 LINE CR1 -85 1492 975 1410 249 74 106 chr13 111579208 111580003 -8164895 + L2 LINE L2 2350 3169 -144 221 0 35 0 chr13 111580003 111580032 -8164866 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2026 111 0 14 chr13 111580034 111580313 -8164585 - AluSg SINE Alu -33 277 3 1410 249 74 106 chr13 111580313 111580467 -8164431 + L2 LINE L2 3170 3278 -35 431 252 103 20 chr13 111582552 111582829 -8162069 + MLT1I LTR MaLR 69 402 -7 183 80 0 0 chr13 111583262 111583287 -8161611 + (T)n Simple_repeat Simple_repeat 1 25 0 225 83 0 0 chr13 111583719 111583755 -8161143 + (T)n Simple_repeat Simple_repeat 1 36 0 503 115 327 9 chr13 111584763 111584876 -8160022 - L1PA16 LINE L1 -9 6157 6009 335 275 129 17 chr13 111585078 111585256 -8159642 + MIR SINE MIR 50 247 -15 963 128 7 0 chr13 111585288 111585429 -8159469 - L1PA10 LINE L1 0 6168 6027 2575 43 0 3 chr13 111587723 111588024 -8156874 - AluY SINE Alu -11 300 1 312 242 0 0 chr13 111589018 111589084 -8155814 + MIR SINE MIR 187 252 -10 1817 91 0 0 chr13 111590435 111590665 -8154233 + AluSq SINE Alu 1 230 -83 999 155 6 0 chr13 111591297 111591458 -8153440 + MLT1B LTR MaLR 3 164 -226 769 209 40 40 chr13 111591864 111592089 -8152809 + MLT1B LTR MaLR 164 388 -2 1883 109 64 0 chr13 111593502 111593800 -8151098 + AluSx SINE Alu 1 315 0 22 35 0 0 chr13 111594198 111594227 -8150671 + AT_rich Low_complexity Low_complexity 1 29 0 197 309 86 12 chr13 111594628 111594709 -8150189 + MIR3 SINE MIR 106 192 -16 324 221 0 0 chr13 111595596 111595673 -8149225 + (TA)n Simple_repeat Simple_repeat 1 77 0 326 272 80 24 chr13 111596161 111596286 -8148612 - L2 LINE L2 0 3272 3141 1573 203 31 49 chr13 111596553 111596943 -8147955 + MLT1B LTR MaLR 1 383 -7 199 359 53 0 chr13 111597028 111597159 -8147739 - L2 LINE L2 -586 2728 2591 714 178 0 22 chr13 111597159 111597294 -8147604 + FLAM_C SINE Alu 1 132 -11 800 347 72 31 chr13 111597294 111597784 -8147114 - L2 LINE L2 -708 2606 2074 835 244 38 0 chr13 111597784 111597993 -8146905 - MER20 DNA MER1_type 0 219 3 800 347 72 31 chr13 111597993 111598243 -8146655 - L2 LINE L2 -1240 2074 1836 465 273 41 8 chr13 111598437 111598558 -8146340 + MLT1L LTR MaLR 152 276 -339 2180 117 0 0 chr13 111599741 111600023 -8144875 + AluSx SINE Alu 1 282 -30 1752 141 76 0 chr13 111600420 111600697 -8144201 - AluSx SINE Alu -14 298 1 2142 130 3 3 chr13 111601042 111601350 -8143548 + AluSx SINE Alu 1 308 -4 380 262 170 14 chr13 111601522 111601663 -8143235 - MIR SINE MIR -98 164 2 246 264 74 61 chr13 111602223 111602386 -8142512 + MLT1I LTR MaLR 245 409 0 1314 221 80 40 chr13 111602391 111602840 -8142058 + MLT1C LTR MaLR 1 467 0 635 187 0 16 chr13 111604420 111604602 -8140296 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 276 200 0 0 chr13 111604616 111604696 -8140202 + (TGGA)n Simple_repeat Simple_repeat 2 81 0 627 167 0 0 chr13 111604718 111604856 -8140042 + (TGGA)n Simple_repeat Simple_repeat 4 141 0 736 306 65 69 chr13 111604925 111605435 -8139463 + LTR67 LTR ERVL 38 545 -12 258 192 0 0 chr13 111605497 111605549 -8139349 + (TG)n Simple_repeat Simple_repeat 2 53 0 2278 103 0 3 chr13 111608435 111608735 -8136163 - AluSg SINE Alu -11 299 1 42 20 0 0 chr13 111608793 111608842 -8136056 + AT_rich Low_complexity Low_complexity 1 49 0 180 178 89 0 chr13 111610075 111610120 -8134778 - L2 LINE L2 -1 3312 3264 24 0 0 0 chr13 111611622 111611646 -8133252 + AT_rich Low_complexity Low_complexity 1 24 0 399 225 35 2 chr13 111611740 111611853 -8133045 - MLT1F1 LTR MaLR 0 567 433 501 216 18 134 chr13 111611901 111612119 -8132779 - MLT1F1 LTR MaLR -339 228 35 337 239 100 106 chr13 111612317 111612497 -8132401 - MIR SINE MIR -73 189 11 2043 117 20 3 chr13 111613222 111613521 -8131377 - AluSx SINE Alu -8 304 1 211 324 169 0 chr13 111613787 111613923 -8130975 - L2 LINE L2 -219 3053 2895 1980 187 3 19 chr13 111614043 111614379 -8130519 + MLT1A1 LTR MaLR 13 344 -21 1990 140 64 17 chr13 111614379 111614737 -8130161 + THE1C LTR MaLR 1 375 0 1980 187 3 19 chr13 111614737 111614759 -8130139 + MLT1A1 LTR MaLR 344 365 0 23 0 0 0 chr13 111615594 111615617 -8129281 + AT_rich Low_complexity Low_complexity 1 23 0 2094 146 3 0 chr13 111615908 111616216 -8128682 + AluSx SINE Alu 1 309 -3 230 156 0 0 chr13 111616384 111616429 -8128469 + (CCCTAA)n Simple_repeat Simple_repeat 6 50 0 1295 206 100 24 chr13 111617285 111617624 -8127274 + MLT1A1 LTR MaLR 1 365 0 391 153 12 12 chr13 111617717 111617802 -8127096 + GA-rich Low_complexity Low_complexity 4 88 0 384 242 2 0 chr13 111617818 111617899 -8126999 - AluS SINE Alu -236 66 1 206 315 0 0 chr13 111617981 111618035 -8126863 - L2 LINE L2 -6 3307 3254 747 62 0 0 chr13 111618270 111618367 -8126531 + (TA)n Simple_repeat Simple_repeat 1 97 0 297 0 0 0 chr13 111618366 111618399 -8126499 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 2016 102 29 15 chr13 111618400 111618674 -8126224 - AluSq SINE Alu -35 278 1 409 326 122 8 chr13 111618911 111619273 -8125625 - L2 LINE L2 -425 2889 2487 277 49 24 0 chr13 111619587 111619628 -8125270 - MADE1 DNA Mariner -33 47 6 204 301 83 53 chr13 111619871 111620004 -8124894 + L2 LINE L2 3116 3252 -20 1771 201 18 6 chr13 111620353 111620696 -8124202 - MLT1A1 LTR MaLR -4 361 15 2020 121 3 3 chr13 111622506 111622822 -8122076 - AluSx SINE Alu 0 316 1 21 0 0 0 chr13 111623326 111623347 -8121551 + AT_rich Low_complexity Low_complexity 1 21 0 2103 161 33 25 chr13 111623528 111623926 -8120972 + L1MC1 LINE L1 5933 6333 0 751 257 16 47 chr13 111624518 111624775 -8120123 - MLT1B LTR MaLR -141 249 1 1616 182 7 21 chr13 111625490 111625781 -8119117 - AluJo SINE Alu -25 287 1 1890 139 3 17 chr13 111626641 111626943 -8117955 + AluJb SINE Alu 14 311 -1 2139 136 0 0 chr13 111627350 111627659 -8117239 + AluSx SINE Alu 1 309 -3 333 0 0 0 chr13 111629341 111629378 -8115520 + (CA)n Simple_repeat Simple_repeat 2 38 0 602 327 57 34 chr13 111630024 111630252 -8114646 + MLT1I LTR MaLR 98 336 -73 1962 154 3 0 chr13 111630252 111630557 -8114341 + AluSx SINE Alu 1 306 -6 602 327 57 34 chr13 111630557 111630625 -8114273 + MLT1I LTR MaLR 336 401 -8 27 29 0 0 chr13 111631029 111631063 -8113835 + AT_rich Low_complexity Low_complexity 1 34 0 181 273 208 13 chr13 111631090 111631167 -8113731 + MER5A DNA MER1_type 45 136 -53 31 0 0 0 chr13 111631418 111631449 -8113449 + AT_rich Low_complexity Low_complexity 1 31 0 219 217 0 0 chr13 111631870 111631916 -8112982 - MIR SINE MIR -108 100 55 263 252 102 82 chr13 111631956 111632103 -8112795 + Charlie8 DNA MER1_type 2 151 -2266 1753 144 8 0 chr13 111635767 111636070 -8108828 - AluSx SINE Alu 0 332 28 372 289 137 0 chr13 111636605 111636809 -8108089 - MIR SINE MIR -16 246 15 2193 102 13 26 chr13 111636846 111637150 -8107748 - AluSx SINE Alu -12 300 1 1026 183 74 100 chr13 111637319 111637669 -8107229 + Charlie4a DNA MER1_type 167 507 -1 303 274 0 0 chr13 111638283 111638356 -8106542 - Charlie4a DNA MER1_type -374 134 62 211 217 0 0 chr13 111638358 111638404 -8106494 + T-rich Low_complexity Low_complexity 2 47 0 2117 117 19 0 chr13 111639614 111639921 -8104977 - AluSq SINE Alu 0 313 1 29 28 0 0 chr13 111639996 111640032 -8104866 + AT_rich Low_complexity Low_complexity 1 36 0 437 222 8 34 chr13 111640112 111640229 -8104669 - MIR SINE MIR -37 225 112 264 279 107 66 chr13 111640376 111640550 -8104348 - MER112 DNA MER1_type -6 254 66 362 0 69 0 chr13 111640550 111640608 -8104290 + (TG)n Simple_repeat Simple_repeat 1 62 0 264 279 107 66 chr13 111640608 111640677 -8104221 - MER112 DNA MER1_type -194 66 1 750 150 8 8 chr13 111641340 111641460 -8103438 + FLAM_A SINE Alu 1 120 -13 293 344 54 12 chr13 111642037 111642278 -8102620 - MIR SINE MIR -5 257 7 2099 134 3 7 chr13 111642419 111642726 -8102172 - AluSx SINE Alu -6 306 1 1437 212 42 29 chr13 111642778 111643156 -8101742 - LTR37A LTR ERV1 0 426 44 781 220 54 5 chr13 111643170 111643356 -8101542 + MER58A DNA MER1_type 30 224 0 235 200 0 20 chr13 111643356 111643404 -8101494 - LTR37A LTR ERV1 -379 47 1 1771 186 22 55 chr13 111643503 111643906 -8100992 - MLT1B LTR MaLR 0 390 1 2058 126 25 13 chr13 111644413 111644730 -8100168 - Tigger7 DNA MER2_type -23 2464 2144 628 216 38 12 chr13 111644729 111644946 -8099952 + Tigger7 DNA MER2_type 76 344 -206 * 301 206 132 0 chr13 111644948 111645016 -8099882 - Tigger7 DNA MER2_type -628 77 1 2198 129 0 0 chr13 111645125 111645436 -8099462 + AluSx SINE Alu 1 311 -1 336 344 83 0 chr13 111645520 111645712 -8099186 - MIR SINE MIR -15 247 40 203 61 30 0 chr13 111647126 111647159 -8097739 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 196 209 47 0 chr13 111647234 111647277 -8097621 + MER5A DNA MER1_type 69 113 -76 24 53 0 0 chr13 111647375 111647413 -8097485 + AT_rich Low_complexity Low_complexity 1 38 0 363 302 9 0 chr13 111648279 111648385 -8096513 + L1MC/D LINE L1 5566 5672 -2136 403 224 91 56 chr13 111648404 111648587 -8096311 - MLT1J1 LTR MaLR -7 424 232 336 235 83 38 chr13 111649363 111649495 -8095403 + L1MC4 LINE L1 7904 8041 -1 342 328 66 8 chr13 111651123 111651245 -8093653 + L2 LINE L2 3143 3271 -1 217 231 0 0 chr13 111651253 111651292 -8093606 + (TG)n Simple_repeat Simple_repeat 2 40 0 891 87 0 0 chr13 111652124 111652250 -8092648 + (CA)n Simple_repeat Simple_repeat 2 127 0 418 315 14 7 chr13 111652976 111653119 -8091779 - MIR3 SINE MIR -23 185 42 189 107 0 0 chr13 111653695 111653723 -8091175 + (T)n Simple_repeat Simple_repeat 1 28 0 234 254 0 15 chr13 111655381 111655448 -8089450 + A-rich Low_complexity Low_complexity 3 68 0 23 0 0 0 chr13 111655475 111655498 -8089400 + AT_rich Low_complexity Low_complexity 1 23 0 228 133 50 0 chr13 111656457 111656517 -8088381 + (TA)n Simple_repeat Simple_repeat 2 64 0 180 77 0 0 chr13 111659029 111659055 -8085843 + (ATG)n Simple_repeat Simple_repeat 1 26 0 374 0 22 0 chr13 111661190 111661236 -8083662 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1526 66 0 0 chr13 111663254 111663437 -8081461 - L1PA5 LINE L1 -4 6150 5968 2542 59 0 0 chr13 111667295 111667600 -8077298 - AluY SINE Alu -6 305 1 1656 132 20 121 chr13 111669123 111669471 -8075427 + LTR32 LTR ERVL 77 389 -82 576 242 15 8 chr13 111672480 111672612 -8072286 - MIR SINE MIR -49 213 81 29 0 0 0 chr13 111673326 111673355 -8071543 + AT_rich Low_complexity Low_complexity 1 29 0 398 175 10 82 chr13 111674299 111674396 -8070502 - Tigger5 DNA MER2_type 0 2323 2234 262 196 20 0 chr13 111674403 111674454 -8070444 - Tigger5 DNA MER2_type -2268 55 4 396 0 0 0 chr13 111675336 111675380 -8069518 + (TG)n Simple_repeat Simple_repeat 1 44 0 25 0 0 0 chr13 111675943 111675968 -8068930 + AT_rich Low_complexity Low_complexity 1 25 0 2046 82 49 0 chr13 111676440 111676738 -8068160 + AluSc SINE Alu 1 311 0 1090 158 6 0 chr13 111677044 111677208 -8067690 + FRAM SINE Alu 1 165 -1 337 262 57 71 chr13 111677733 111677874 -8067024 + L2 LINE L2 3175 3313 0 186 242 40 121 chr13 111680154 111680253 -8064645 + MER5A DNA MER1_type 95 185 -4 220 283 104 47 chr13 111681665 111681771 -8063127 + L2 LINE L2 3201 3312 -1 2290 92 3 0 chr13 111683767 111684059 -8060839 + AluSg1 SINE Alu 2 294 -15 22 0 0 0 chr13 111685001 111685023 -8059875 + AT_rich Low_complexity Low_complexity 1 22 0 216 343 0 49 chr13 111688521 111688623 -8056275 + L2 LINE L2 3176 3272 0 705 269 70 22 chr13 111690060 111690287 -8054611 + MIR SINE MIR 16 253 -9 466 344 36 32 chr13 111690777 111691024 -8053874 - MIR SINE MIR 0 262 15 806 208 28 6 chr13 111691706 111691884 -8053014 + MER5A DNA MER1_type 5 186 -3 213 119 15 30 chr13 111692961 111693028 -8051870 + (TAAAAA)n Simple_repeat Simple_repeat 5 70 0 24 0 0 0 chr13 111697635 111697659 -8047239 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr13 111700112 111700156 -8044742 + GC_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr13 111700491 111700526 -8044372 + GC_rich Low_complexity Low_complexity 1 35 0 356 284 117 102 chr13 111700760 111701352 -8043546 - L1M2 LINE L1 -5457 1392 633 24 0 0 0 chr13 111701404 111701428 -8043470 + GC_rich Low_complexity Low_complexity 1 24 0 332 278 22 0 chr13 111702926 111703016 -8041882 - L1MC4 LINE L1 -1337 6705 6614 246 208 0 0 chr13 111703016 111703069 -8041829 + (TA)n Simple_repeat Simple_repeat 2 54 0 2408 66 3 3 chr13 111704018 111704321 -8040577 + AluY SINE Alu 1 303 -8 2068 103 0 4 chr13 111705745 111706016 -8038882 + AluSc SINE Alu 1 270 -39 22 0 0 0 chr13 111706157 111706179 -8038719 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr13 111706504 111706545 -8038353 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr13 111709303 111709327 -8035571 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 111709614 111709637 -8035261 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 200 222 0 0 chr13 111709770 111709815 -8035083 + T-rich Low_complexity Low_complexity 4 48 0 234 189 14 54 chr13 111709895 111709969 -8034929 + L1MA4 LINE L1 6226 6296 -4 803 220 95 30 chr13 111710763 111710963 -8033935 + MER20 DNA MER1_type 7 219 0 257 178 111 11 chr13 111712498 111712588 -8032310 + L1MC4a LINE L1 5393 5491 -2317 1326 194 107 71 chr13 111712588 111712970 -8031928 + MSTD LTR MaLR 1 396 0 603 270 43 91 chr13 111713001 111713397 -8031501 + L1MC4a LINE L1 5587 5963 -1845 2108 105 3 16 chr13 111714456 111714762 -8030136 - AluY SINE Alu -9 302 1 777 246 165 11 chr13 111716308 111716568 -8028330 - MLT1D LTR MaLR 0 505 206 2253 192 66 34 chr13 111716599 111717292 -8027606 - MLT1D-int LTR MaLR -487 884 42 1219 197 94 78 chr13 111717292 111717728 -8027170 - MLT1D LTR MaLR -23 482 40 300 271 168 33 chr13 111719098 111719312 -8025586 - L1ME LINE L1 -396 5725 5483 235 312 96 8 chr13 111719700 111719825 -8025073 + L2 LINE L2 2931 3066 -206 2223 110 7 0 chr13 111720316 111720616 -8024282 + AluSg SINE Alu 1 302 -8 2194 100 3 13 chr13 111720787 111721087 -8023811 + AluSq SINE Alu 1 297 -16 421 228 96 13 chr13 111721136 111721356 -8023542 + MER5C DNA MER1_type 2 323 -1 34 0 0 0 chr13 111723152 111723186 -8021712 + AT_rich Low_complexity Low_complexity 1 34 0 451 177 229 11 chr13 111726219 111726394 -8018504 + Charlie5 DNA MER1_type 2412 2624 0 360 0 0 0 chr13 111727133 111727173 -8017725 + (CA)n Simple_repeat Simple_repeat 2 41 0 339 256 151 52 chr13 111727549 111727721 -8017177 - REP3 LTR ERV -127 435 247 2007 68 71 71 chr13 111728420 111728731 -8016167 + AluY SINE Alu 1 311 0 331 301 85 53 chr13 111728898 111729144 -8015754 - MIR SINE MIR -2 260 7 861 139 16 0 chr13 111729233 111729355 -8015543 + AluJb SINE Alu 1 124 -188 292 307 169 0 chr13 111729979 111730145 -8014753 - MIR SINE MIR -3 259 66 201 343 35 42 chr13 111730278 111730421 -8014477 + L2 LINE L2 2067 2208 -1106 190 281 156 50 chr13 111730735 111730934 -8013964 + L2 LINE L2 2614 2833 -481 350 269 0 0 chr13 111731232 111731310 -8013588 + L2 LINE L2 3235 3312 -1 399 160 0 27 chr13 111732577 111732652 -8012246 + L1ME2 LINE L1 6058 6130 -34 321 245 20 33 chr13 111733123 111733274 -8011624 + C-rich Low_complexity Low_complexity 6 154 0 195 288 34 0 chr13 111734186 111734245 -8010653 + MIR SINE MIR 86 146 -62 739 230 113 18 chr13 111734312 111734534 -8010364 - MIR SINE MIR -5 257 15 330 282 104 44 chr13 111734716 111735081 -8009817 + L1M4 LINE L1 4316 4702 -1444 1102 200 21 30 chr13 111735085 111735320 -8009578 - MLT1A1 LTR MaLR 0 365 133 758 163 15 7 chr13 111735321 111735456 -8009442 + MLT1A1 LTR MaLR 3 138 -227 1250 207 5 148 chr13 111735456 111735882 -8009016 - MLT1A1 LTR MaLR 0 365 1 1210 208 17 9 chr13 111735882 111736112 -8008786 + MLT1A1 LTR MaLR 134 365 0 242 126 69 81 chr13 111736112 111736199 -8008699 - MLT1A1 LTR MaLR -225 149 64 614 145 29 58 chr13 111736444 111736582 -8008316 - MLT1A1 LTR MaLR -231 134 1 297 196 10 39 chr13 111736815 111736917 -8007981 + (TA)n Simple_repeat Simple_repeat 1 99 0 1004 188 126 5 chr13 111736969 111737192 -8007706 - MLT1C LTR MaLR 0 467 218 2278 100 0 0 chr13 111737280 111737569 -8007329 + AluSg1 SINE Alu 1 289 -20 228 67 0 0 chr13 111737621 111737651 -8007247 + (A)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr13 111737969 111737997 -8006901 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2376 126 24 21 chr13 111738181 111738555 -8006343 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr13 111738981 111739023 -8005875 + AT_rich Low_complexity Low_complexity 1 42 0 1572 196 111 46 chr13 111739826 111740286 -8004612 - MER92B LTR ERV1 0 636 147 2136 131 30 40 chr13 111740297 111740723 -8004175 + THE1C LTR MaLR 1 428 0 580 215 76 7 chr13 111740723 111740861 -8004037 - MER92B LTR ERV1 -488 148 1 4012 185 132 134 chr13 111740893 111742764 -8002134 - L1MCa LINE L1 -4510 1916 51 214 154 77 0 chr13 111743225 111743264 -8001634 - MER5A DNA MER1_type -2 187 146 1685 231 58 14 chr13 111743561 111744012 -8000886 + MLT1C LTR MaLR 1 396 0 1281 254 160 18 chr13 111744661 111745168 -7999730 - MLT1G LTR MaLR -11 579 1 310 323 11 11 chr13 111745248 111745341 -7999557 + MIR3 SINE MIR 82 174 -34 2320 104 0 0 chr13 111745726 111746024 -7998874 - AluSg SINE Alu -12 298 1 347 288 101 45 chr13 111746265 111746463 -7998435 - MIR SINE MIR -26 236 28 920 239 8 59 chr13 111746593 111746848 -7998050 - MER45C DNA AcHobo 0 953 712 672 243 60 32 chr13 111747043 111747261 -7997637 - MER45C DNA AcHobo -729 224 1 472 284 116 13 chr13 111747588 111747820 -7997078 + LTR16C LTR ERVL 233 488 -3 2687 132 48 19 chr13 111747887 111748303 -7996595 + MSTC LTR MaLR 1 428 0 1472 274 69 35 chr13 111748564 111749129 -7995769 + MLT1L LTR MaLR 15 598 -17 285 281 205 19 chr13 111749316 111749579 -7995319 + L1MC4 LINE L1 7690 8001 -41 2004 148 37 53 chr13 111750284 111750663 -7994235 + THE1C LTR MaLR 3 375 0 9721 136 45 33 chr13 111750663 111752223 -7992675 + THE1C-int LTR MaLR 1 1580 0 2206 123 26 47 chr13 111752223 111752606 -7992292 + THE1C LTR MaLR 1 375 0 207 0 0 0 chr13 111752741 111752764 -7992134 + (TG)n Simple_repeat Simple_repeat 2 24 0 2102 187 35 44 chr13 111752764 111753245 -7991653 + MER31A LTR ERV1 1 477 -8 204 40 0 0 chr13 111753449 111753474 -7991424 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 708 163 25 104 chr13 111753962 111754164 -7990734 - MER53 DNA DNA 0 189 4 884 229 38 30 chr13 111754323 111754585 -7990313 - L1MC/D LINE L1 -2285 5759 5496 239 272 46 35 chr13 111754853 111755070 -7989828 - L1MC/D LINE L1 -3789 2593 2374 226 276 9 29 chr13 111755450 111755555 -7989343 - HAL1b LINE L1 -506 842 740 666 224 118 72 chr13 111755657 111755988 -7988910 - HAL1b LINE L1 -809 539 194 207 100 0 0 chr13 111756220 111756250 -7988648 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2116 106 28 0 chr13 111756253 111756535 -7988363 - AluSc SINE Alu -15 294 5 251 251 117 12 chr13 111756629 111756792 -7988106 + L1MC4a LINE L1 5815 5994 -1814 271 353 156 13 chr13 111757149 111757699 -7987199 + L2 LINE L2 1509 2137 -1177 220 208 19 19 chr13 111757734 111757787 -7987111 + L2 LINE L2 2231 2283 -1031 308 250 0 0 chr13 111757788 111757852 -7987046 + Tigger2 DNA MER2_type 2 65 -2653 * 2813 128 34 7 chr13 111757841 111758280 -7986618 + Tigger2 DNA MER2_type 2268 2718 0 640 322 109 47 chr13 111758281 111759245 -7985653 + L2 LINE L2 2283 3313 0 21 71 0 0 chr13 111759523 111759565 -7985333 + AT_rich Low_complexity Low_complexity 1 42 0 2124 140 0 9 chr13 111759731 111760046 -7984852 + AluSx SINE Alu 1 312 0 206 300 182 18 chr13 111760123 111760233 -7984665 - L2 LINE L2 0 3313 3186 292 263 14 124 chr13 111761123 111761340 -7983558 + HAL1 LINE L1 1 193 -2314 358 102 47 39 chr13 111761770 111761898 -7983000 + (TG)n Simple_repeat Simple_repeat 1 129 0 228 82 41 41 chr13 111761924 111761997 -7982901 + (TG)n Simple_repeat Simple_repeat 2 74 0 1149 186 94 76 chr13 111762628 111762956 -7981942 - L1MD3 LINE L1 -14 7981 7648 280 215 188 21 chr13 111763067 111763211 -7981687 + MLT1D LTR MaLR 262 429 -76 1239 179 0 22 chr13 111763227 111763450 -7981448 - AluJo SINE Alu -76 236 19 239 145 24 0 chr13 111763466 111763517 -7981381 + MLT1E2 LTR MaLR 416 626 0 266 197 74 66 chr13 111763832 111763954 -7980944 + LTR33 LTR ERVL 48 170 -351 316 269 171 6 chr13 111764054 111764229 -7980669 + LTR33 LTR ERVL 310 513 -8 2353 164 8 10 chr13 111764341 111764732 -7980166 + MLT1B LTR MaLR 1 390 0 21 57 0 0 chr13 111765048 111765083 -7979815 + AT_rich Low_complexity Low_complexity 1 35 0 2258 123 63 26 chr13 111765100 111765451 -7979447 - THE1B LTR MaLR 0 364 1 267 326 48 53 chr13 111765839 111766066 -7978832 + L2 LINE L2 2174 2399 -915 525 290 104 54 chr13 111766206 111766517 -7978381 + L1ME4a LINE L1 5373 5667 -454 1708 119 0 61 chr13 111766517 111766794 -7978104 - AluSx SINE Alu -9 303 44 525 290 104 54 chr13 111766794 111767185 -7977713 + L1ME4a LINE L1 5667 6110 -11 21 0 0 0 chr13 111767194 111767215 -7977683 + AT_rich Low_complexity Low_complexity 1 21 0 872 288 121 81 chr13 111768326 111768607 -7976291 + L2 LINE L2 874 1142 -2172 2447 96 0 3 chr13 111768607 111768920 -7975978 + AluSq SINE Alu 1 312 -1 872 288 121 81 chr13 111768920 111769537 -7975361 + L2 LINE L2 1142 1808 -1506 227 164 36 0 chr13 111769600 111769655 -7975243 + (TA)n Simple_repeat Simple_repeat 2 58 0 222 176 0 0 chr13 111769813 111769864 -7975034 + CT-rich Low_complexity Low_complexity 2 52 0 366 239 28 6 chr13 111769960 111770140 -7974758 + GA-rich Low_complexity Low_complexity 1 183 0 813 307 80 26 chr13 111770259 111770800 -7974098 - L1ME3A LINE L1 -273 5880 5311 3084 76 0 0 chr13 111770826 111771221 -7973677 + MER41A LTR ERV1 1 395 -159 247 273 50 22 chr13 111771242 111771381 -7973517 - L1ME3A LINE L1 -1002 5127 4985 362 257 17 4 chr13 111771698 111771807 -7973091 - L1MEd LINE L1 -4636 1576 1383 6604 144 18 36 chr13 111771869 111772018 -7972880 + L1MA9 LINE L1 4204 4354 -1958 2185 135 127 18 chr13 111772018 111772404 -7972494 + MSTA LTR MaLR 1 428 0 6604 144 18 36 chr13 111772404 111774398 -7970500 + L1MA9 LINE L1 4354 6312 0 300 260 71 77 chr13 111774399 111774707 -7970191 - L1MEd LINE L1 -4862 1257 1061 425 324 93 29 chr13 111774909 111775187 -7969711 - L2 LINE L2 -558 2756 2461 1292 261 112 49 chr13 111775306 111775772 -7969126 + L2 LINE L2 1276 1790 -1524 2039 122 72 36 chr13 111775772 111776132 -7968766 + THE1C LTR MaLR 3 375 0 1292 261 112 49 chr13 111776132 111776274 -7968624 + L2 LINE L2 1790 1922 -1392 541 211 242 27 chr13 111776292 111776515 -7968383 + LTR16A1 LTR ERVL 187 457 0 241 288 30 0 chr13 111776754 111776820 -7968078 + L2 LINE L2 3205 3272 0 235 329 51 0 chr13 111777287 111777366 -7967532 - L3 LINE CR1 -224 1353 1271 2011 167 47 27 chr13 111777369 111777895 -7967003 + MLT2A2 LTR ERVL 1 542 -12 223 283 19 0 chr13 111777906 111777959 -7966939 - L3 LINE CR1 -305 1272 1219 230 282 107 30 chr13 111777973 111778104 -7966794 + L2 LINE L2 1525 1665 -1649 641 208 74 30 chr13 111778128 111778330 -7966568 - MER20B DNA MER1_type -6 777 567 1255 189 127 99 chr13 111778384 111778871 -7966027 + MLT1F1 LTR MaLR 67 567 0 2005 122 116 30 chr13 111779482 111779817 -7965081 + THE1B LTR MaLR 1 364 0 1068 233 75 72 chr13 111779840 111780213 -7964685 + MLT1A2 LTR MaLR 1 374 0 301 299 35 0 chr13 111780522 111780609 -7964289 - MER20B DNA MER1_type -692 91 2 302 304 0 59 chr13 111781260 111781362 -7963536 + L2 LINE L2 3171 3266 -47 458 198 55 77 chr13 111781442 111781624 -7963274 - L1MC5 LINE L1 -27 7934 7757 1317 97 0 0 chr13 111781650 111781825 -7963073 - L1MA2 LINE L1 -4 6300 6126 1008 117 12 14 chr13 111781852 111782020 -7962878 - L1MA2 LINE L1 -589 5565 5402 590 300 77 27 chr13 111782025 111782322 -7962576 - HERV16 LTR ERVL -3589 2065 1754 1060 292 63 26 chr13 111782328 111782860 -7962038 - HERV16 LTR ERVL -3839 1157 567 2087 121 3 10 chr13 111782860 111783158 -7961740 - AluSx SINE Alu -16 296 1 1060 292 63 26 chr13 111783158 111783606 -7961292 - HERV16 LTR ERVL -4429 567 137 780 304 33 21 chr13 111783718 111784053 -7960845 - LTR16A LTR ERVL -8 442 104 189 175 31 144 chr13 111784590 111784687 -7960211 + L2 LINE L2 2628 2713 -601 446 274 30 56 chr13 111784687 111784884 -7960014 - L2 LINE L2 -1 3312 3121 22 0 0 0 chr13 111786772 111786794 -7958104 + AT_rich Low_complexity Low_complexity 1 22 0 611 259 41 12 chr13 111786800 111786970 -7957928 - MIR SINE MIR -64 198 24 483 351 86 8 chr13 111789511 111789756 -7955142 - L3 LINE CR1 -18 1559 1296 182 331 70 7 chr13 111789830 111789972 -7954926 + MIR SINE MIR 79 229 -33 281 365 40 7 chr13 111790371 111790519 -7954379 - MIR SINE MIR -22 240 88 1186 148 0 46 chr13 111790617 111790833 -7954065 - MLT2B2 LTR ERVL 0 515 310 240 340 54 14 chr13 111790876 111791023 -7953875 + MIR SINE MIR 109 261 -1 1000 171 47 84 chr13 111791040 111791315 -7953583 - MLT2B1 LTR ERVL -255 265 1 523 304 188 17 chr13 111792434 111792779 -7952119 - LTR33 LTR ERVL -64 457 54 342 83 42 14 chr13 111792973 111793045 -7951853 + T-rich Low_complexity Low_complexity 2 75 0 495 289 70 0 chr13 111794189 111794345 -7950553 + MIR SINE MIR 79 245 -17 214 260 229 10 chr13 111794368 111794464 -7950434 - L2 LINE L2 -6 3307 3191 215 296 77 111 chr13 111795272 111795712 -7949186 - L2 LINE L2 0 3272 2848 934 233 31 56 chr13 111795962 111796249 -7948649 - MLT1A2 LTR MaLR 0 374 95 25 65 0 0 chr13 111796889 111796935 -7947963 + AT_rich Low_complexity Low_complexity 1 46 0 601 243 71 0 chr13 111797679 111797819 -7947079 + MER5A DNA MER1_type 1 150 -39 1371 175 3 94 chr13 111797839 111798136 -7946762 + MLT1B LTR MaLR 119 388 -2 663 272 115 0 chr13 111798137 111798354 -7946544 + MIR SINE MIR 13 254 -8 2005 134 72 28 chr13 111798471 111798830 -7946068 + THE1C LTR MaLR 1 375 0 1535 217 50 39 chr13 111798997 111799454 -7945444 - MLT1C LTR MaLR -5 462 1 216 328 135 35 chr13 111799480 111799635 -7945263 - MIR3 SINE MIR -56 152 14 534 310 29 0 chr13 111800259 111800430 -7944468 + MIR SINE MIR 75 250 -12 966 208 116 105 chr13 111801230 111801687 -7943211 - MLT1C LTR MaLR -5 462 1 2148 119 31 0 chr13 111802523 111802817 -7942081 - AluSx SINE Alu -9 303 1 765 253 49 57 chr13 111804709 111805045 -7939853 + MLT1D LTR MaLR 129 447 -20 727 144 90 85 chr13 111805166 111805264 -7939634 - MER45B DNA AcHobo -543 1038 942 2297 77 3 0 chr13 111805264 111805551 -7939347 + AluSq SINE Alu 14 301 -12 727 144 90 85 chr13 111805551 111805653 -7939245 - MER45B DNA AcHobo -639 942 837 30 27 0 0 chr13 111805654 111805691 -7939207 + AT_rich Low_complexity Low_complexity 1 37 0 1093 185 5 9 chr13 111805694 111805905 -7938993 - AluJo SINE Alu -17 295 86 548 204 19 0 chr13 111805931 111806034 -7938864 + FLAM_A SINE Alu 23 127 -15 1939 269 200 4 chr13 111806034 111806719 -7938179 - MER45B DNA AcHobo -207 833 15 387 263 26 0 chr13 111806751 111806865 -7938033 + LTR67 LTR ERVL 417 533 -24 2066 182 106 14 chr13 111806890 111807314 -7937584 + MLT1C LTR MaLR 5 467 0 236 215 107 41 chr13 111807609 111807730 -7937168 + L1P LINE L1 5269 5397 -769 236 366 32 0 chr13 111808081 111808204 -7936694 - HAL1 LINE L1 -13 2494 2368 503 273 147 24 chr13 111808530 111808823 -7936075 + L1ME4a LINE L1 5592 5920 -201 1394 201 69 2 chr13 111808949 111809366 -7935532 + LTR54 LTR ERV1 1 403 0 273 350 32 8 chr13 111810853 111810976 -7933922 - MIR SINE MIR -74 188 63 191 167 24 0 chr13 111811459 111811501 -7933397 + CT-rich Low_complexity Low_complexity 1 43 0 217 345 46 40 chr13 111811502 111811676 -7933222 + L2 LINE L2 2565 2739 -575 715 213 142 35 chr13 111813692 111813889 -7931009 - MER20 DNA MER1_type 0 219 2 499 270 46 7 chr13 111814276 111814428 -7930470 - MER117 DNA MER1_type -39 158 1 24 0 0 0 chr13 111814562 111814586 -7930312 + AT_rich Low_complexity Low_complexity 1 24 0 414 173 10 125 chr13 111815075 111815179 -7929719 + MER5A DNA MER1_type 93 184 -5 182 177 32 81 chr13 111815225 111815287 -7929611 - MER5A DNA MER1_type -68 121 63 425 230 115 9 chr13 111815651 111815764 -7929134 + MARNA DNA Mariner 238 362 -224 3344 95 35 5 chr13 111815774 111816165 -7928733 + MLT2A1 LTR ERVL 1 408 -36 399 21 0 0 chr13 111816165 111816213 -7928685 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 3344 95 35 5 chr13 111816213 111816252 -7928646 + MLT2A1 LTR ERVL 408 444 0 2201 96 33 13 chr13 111817723 111818026 -7926872 - AluSx SINE Alu -3 309 1 200 314 87 52 chr13 111818935 111819107 -7925791 - L2 LINE L2 -30 3283 3106 557 265 17 61 chr13 111819171 111819352 -7925546 + MIR SINE MIR 29 201 -61 347 287 10 10 chr13 111819404 111819505 -7925393 - MIR SINE MIR -92 170 70 1955 217 45 38 chr13 111819509 111820016 -7924882 - LTR53 LTR ERVL -8 511 1 215 396 54 9 chr13 111820314 111820425 -7924473 + MIR SINE MIR 38 153 -109 2175 120 0 7 chr13 111820683 111820984 -7923914 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr13 111822067 111822088 -7922810 + (T)n Simple_repeat Simple_repeat 1 21 0 233 336 56 9 chr13 111823353 111823460 -7921438 + L2 LINE L2 3149 3260 -12 396 281 35 18 chr13 111824215 111824329 -7920569 + L2 LINE L2 3193 3308 -5 294 343 20 0 chr13 111825125 111825224 -7919674 - MIR3 SINE MIR -25 183 83 259 188 162 86 chr13 111825640 111825736 -7919162 - MIR SINE MIR -65 143 35 2097 195 54 14 chr13 111825736 111826177 -7918721 + MLT2C2 LTR ERVL 4 462 -2 259 188 162 86 chr13 111826177 111826197 -7918701 - MIR SINE MIR -173 35 18 1605 173 11 32 chr13 111828171 111828454 -7916444 - AluJo SINE Alu -35 277 1 23 0 0 0 chr13 111830395 111830418 -7914480 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 111830482 111830507 -7914391 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr13 111830733 111830754 -7914144 + AT_rich Low_complexity Low_complexity 1 21 0 275 243 68 39 chr13 111831989 111832092 -7912806 + MLT1D LTR MaLR 2 107 -398 2170 157 47 31 chr13 111832097 111832633 -7912265 - MLT2A2 LTR ERVL 0 554 1 1367 240 28 33 chr13 111832642 111833034 -7911864 + MLT1D LTR MaLR 116 505 0 1236 214 75 36 chr13 111833039 111833398 -7911500 - MLT1A2 LTR MaLR -1 373 1 40 37 0 0 chr13 111833522 111833576 -7911322 + AT_rich Low_complexity Low_complexity 1 54 0 744 205 53 0 chr13 111833596 111833767 -7911131 + L1MA8 LINE L1 6101 6280 -11 1339 268 30 0 chr13 111833814 111834187 -7910711 - L1MD3 LINE L1 -8 7987 7604 235 233 67 0 chr13 111834596 111834656 -7910242 - MIR SINE MIR 0 262 199 438 357 121 26 chr13 111834864 111835251 -7909647 - L3 LINE CR1 -4 1573 1150 398 205 175 24 chr13 111837406 111837572 -7907326 + Charlie7 DNA MER1_type 348 538 -2074 287 150 150 60 chr13 111837727 111837827 -7907071 + Charlie7 DNA MER1_type 617 725 -1887 593 341 57 18 chr13 111838670 111839004 -7905894 + MLT1K LTR MaLR 234 580 -8 219 190 69 17 chr13 111839138 111839196 -7905702 + MIR SINE MIR 103 149 -59 503 301 143 11 chr13 111839607 111839893 -7905005 - MLT1K LTR MaLR -31 557 234 496 296 130 26 chr13 111841340 111841701 -7903197 + L1ME3A LINE L1 5210 5532 -638 2459 112 19 27 chr13 111841701 111842067 -7902831 - THE1B LTR MaLR 0 364 2 496 296 130 26 chr13 111842067 111842309 -7902589 + L1ME3A LINE L1 5532 5896 -274 2367 103 0 0 chr13 111842779 111843089 -7901809 + AluSx SINE Alu 1 310 -2 1922 162 13 0 chr13 111845333 111845641 -7899257 + AluJb SINE Alu 1 312 0 22 56 0 0 chr13 111848353 111848389 -7896509 + AT_rich Low_complexity Low_complexity 1 36 0 2203 111 3 7 chr13 111848484 111848791 -7896107 + AluSc SINE Alu 1 306 -3 326 312 13 57 chr13 111849273 111849430 -7895468 - MIR SINE MIR -66 196 47 519 262 54 48 chr13 111849751 111849919 -7894979 + MER5A DNA MER1_type 21 189 0 255 220 33 0 chr13 111852295 111852386 -7892512 + CT-rich Low_complexity Low_complexity 2 95 0 1727 158 44 0 chr13 111852386 111852684 -7892214 - AluSx SINE Alu 0 312 2 206 299 110 16 chr13 111852826 111852953 -7891945 + L2 LINE L2 2712 2850 -464 677 329 163 26 chr13 111853578 111854693 -7890205 - L2 LINE L2 -213 3059 1789 205 237 0 102 chr13 111854982 111855041 -7889857 + MER91 DNA MER1_type 130 182 -8 352 335 89 26 chr13 111855070 111855383 -7889515 - L2 LINE L2 -1707 1607 1275 5147 106 2 16 chr13 111855530 111856316 -7888582 + L1PA11 LINE L1 5400 6174 0 2034 129 0 0 chr13 111858614 111858894 -7886004 + AluSq SINE Alu 1 280 -33 834 56 24 8 chr13 111858894 111859019 -7885879 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 439 299 164 0 chr13 111859180 111859454 -7885444 - L1ME4a LINE L1 -280 5841 5523 950 312 163 29 chr13 111859682 111860898 -7884000 + L2 LINE L2 1923 3310 -3 212 290 48 65 chr13 111863334 111863458 -7881440 - L3 LINE CR1 -12 1565 1444 377 266 161 35 chr13 111863498 111863539 -7881359 - L1ME4a LINE L1 -108 6013 5979 2431 56 3 28 chr13 111863539 111863858 -7881040 - AluY SINE Alu 0 311 1 377 266 161 35 chr13 111863858 111864158 -7880740 - L1ME4a LINE L1 -142 5979 5629 2425 70 0 19 chr13 111864284 111864600 -7880298 - AluY SINE Alu -1 310 1 22 0 0 0 chr13 111864724 111864746 -7880152 + AT_rich Low_complexity Low_complexity 1 22 0 550 227 28 28 chr13 111864771 111864947 -7879951 - MER5B DNA MER1_type 0 178 3 730 325 8 8 chr13 111865050 111865293 -7879605 + MIR SINE MIR 9 251 -11 1619 134 0 131 chr13 111866605 111866955 -7877943 - AluJo SINE Alu -6 306 3 202 204 0 0 chr13 111866970 111867014 -7877884 - L3b LINE CR1 0 1583 1540 736 198 42 37 chr13 111869934 111870151 -7874747 - MER20 DNA MER1_type 0 219 2 607 326 100 23 chr13 111870174 111870573 -7874325 + L2 LINE L2 2884 3313 0 45 55 0 0 chr13 111870943 111871016 -7873882 + AT_rich Low_complexity Low_complexity 1 73 0 535 325 28 5 chr13 111871339 111871551 -7873347 + MIR SINE MIR 21 237 -25 28 0 0 0 chr13 111871708 111871736 -7873162 + AT_rich Low_complexity Low_complexity 1 28 0 336 24 0 0 chr13 111871852 111871893 -7873005 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 0 0 0 chr13 111872056 111872090 -7872808 + (CA)n Simple_repeat Simple_repeat 2 35 0 190 317 173 0 chr13 111872309 111872413 -7872485 + MIR SINE MIR 48 169 -93 800 148 0 22 chr13 111872906 111873041 -7871857 - FLAM_A SINE Alu 0 142 11 2001 138 26 34 chr13 111873042 111873420 -7871478 - THE1C LTR MaLR 0 375 1 181 315 98 0 chr13 111876654 111876746 -7868152 - MIR SINE MIR -70 192 92 2390 73 0 3 chr13 111876746 111877046 -7867852 + AluY SINE Alu 1 299 -12 319 354 10 0 chr13 111877060 111877156 -7867742 - MIR SINE MIR -158 104 8 21 0 0 0 chr13 111879243 111879264 -7865634 + AT_rich Low_complexity Low_complexity 1 21 0 199 245 102 0 chr13 111880318 111880367 -7864531 + MIR SINE MIR 95 148 -60 483 18 0 0 chr13 111880374 111880430 -7864468 + (CTG)n Simple_repeat Simple_repeat 1 56 0 192 298 18 0 chr13 111880566 111880623 -7864275 + MIR3 SINE MIR 151 208 0 6858 208 60 81 chr13 111880979 111882675 -7862223 - L1MB7 LINE L1 -60 6622 4891 886 178 11 171 chr13 111882675 111882956 -7861942 - MER8 DNA MER2_type -3 236 1 6858 208 60 81 chr13 111882956 111885098 -7859800 - L1MB7 LINE L1 -1791 4891 2607 1537 198 35 58 chr13 111885098 111885497 -7859401 - MLT1B LTR MaLR 0 390 1 6858 208 60 81 chr13 111885497 111885731 -7859167 - L1MB7 LINE L1 -4075 2607 2369 5252 220 52 52 chr13 111885792 111886647 -7858251 - L1MB7 LINE L1 -4488 2158 1304 1870 169 7 3 chr13 111886647 111886955 -7857943 - AluJb SINE Alu -1 311 3 5252 220 52 52 chr13 111886955 111887663 -7857235 - L1MB7 LINE L1 -5342 1304 560 2060 59 0 28 chr13 111887663 111887952 -7856946 + L1PA6 LINE L1 5874 6154 0 5252 220 52 52 chr13 111887952 111888490 -7856408 - L1MB7 LINE L1 -6086 560 23 212 298 77 67 chr13 111889681 111889785 -7855113 - L2 LINE L2 -26 3287 3183 1010 205 105 28 chr13 111890008 111890369 -7854529 - Charlie5 DNA MER1_type 0 2622 2234 272 188 0 0 chr13 111890369 111890433 -7854465 - Charlie5 DNA MER1_type -2485 127 64 198 372 0 21 chr13 111890582 111890676 -7854222 - MIR SINE MIR -75 133 42 269 135 19 0 chr13 111890797 111890849 -7854049 + GA-rich Low_complexity Low_complexity 1 53 0 180 213 106 0 chr13 111891919 111891966 -7852932 - L2 LINE L2 -2025 1289 1238 2315 148 18 37 chr13 111892175 111892629 -7852269 - MER65A LTR ERV1 0 445 1 346 330 40 29 chr13 111893883 111894056 -7850842 - MER5A DNA MER1_type -14 175 1 309 315 52 73 chr13 111894111 111894186 -7850712 - MIR SINE MIR -34 228 153 2401 86 3 9 chr13 111894186 111894501 -7850397 - AluSp SINE Alu 0 313 1 309 315 52 73 chr13 111894501 111894657 -7850241 - MIR SINE MIR -109 153 2 465 297 19 58 chr13 111895192 111895657 -7849241 - L1ME4a LINE L1 -169 5952 5506 2190 128 0 3 chr13 111896379 111896675 -7848223 + AluSx SINE Alu 1 295 -17 234 0 0 0 chr13 111897067 111897093 -7847805 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 865 220 0 0 chr13 111897096 111897246 -7847652 - AluJb SINE Alu -32 280 131 1148 198 19 2 chr13 111898285 111898599 -7846299 + L1MA4 LINE L1 5979 6299 -1 623 142 17 25 chr13 111898607 111898727 -7846171 + L1MB8 LINE L1 6060 6178 0 225 154 0 0 chr13 111898984 111899023 -7845875 + T-rich Low_complexity Low_complexity 1 39 0 29 70 0 0 chr13 111899725 111899782 -7845116 + AT_rich Low_complexity Low_complexity 1 57 0 2309 117 17 8 chr13 111900282 111900634 -7844264 - THE1A LTR MaLR 0 355 1 221 323 145 48 chr13 111900857 111900981 -7843917 - L2 LINE L2 -10 3262 3127 1993 68 0 4 chr13 111901491 111901741 -7843157 + AluY SINE Alu 28 276 -35 237 119 0 0 chr13 111901744 111901786 -7843112 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 2536 55 0 0 chr13 111903037 111903344 -7841554 + AluY SINE Alu 2 308 -3 206 93 0 23 chr13 111904458 111904501 -7840397 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 235 372 74 8 chr13 111904941 111905062 -7839836 + L2 LINE L2 2924 3052 -220 23 0 0 0 chr13 111905291 111905314 -7839584 + AT_rich Low_complexity Low_complexity 1 23 0 265 254 0 0 chr13 111906457 111906512 -7838386 - MIR3 SINE MIR -3 205 151 231 114 0 0 chr13 111906636 111906671 -7838227 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2156 119 7 0 chr13 111908187 111908480 -7836418 + AluSq SINE Alu 1 295 -18 905 118 0 0 chr13 111911401 111911536 -7833362 - L1PA10 LINE L1 0 6168 6034 256 137 0 0 chr13 111911541 111911592 -7833306 + L1P LINE L1 5104 5154 -992 21 0 0 0 chr13 111911744 111911765 -7833133 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr13 111912690 111912714 -7832184 + (ATTAG)n Simple_repeat Simple_repeat 3 26 0 316 291 61 54 chr13 111912942 111913090 -7831808 + L2 LINE L2 3165 3313 0 267 291 38 42 chr13 111913511 111913725 -7831173 + MIR SINE MIR 19 233 -29 2463 212 57 54 chr13 111915630 111916319 -7828579 - LTR8 LTR ERV1 0 691 1 387 247 221 0 chr13 111916963 111917117 -7827781 + MIR SINE MIR 39 226 -36 295 325 117 8 chr13 111917176 111917296 -7827602 - MIR3 SINE MIR -68 140 8 372 94 0 0 chr13 111918864 111918917 -7825981 + (T)n Simple_repeat Simple_repeat 1 53 0 479 228 32 32 chr13 111920363 111920521 -7824377 - L1ME4a LINE L1 -7 6114 5957 23 0 0 0 chr13 111922220 111922243 -7822655 + AT_rich Low_complexity Low_complexity 1 23 0 235 372 74 8 chr13 111922472 111922593 -7822305 - L2 LINE L2 -220 3052 2924 206 93 0 23 chr13 111923033 111923076 -7821822 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 2636 36 0 3 chr13 111924190 111924499 -7820399 - AluY SINE Alu -3 308 1 255 122 0 0 chr13 111924582 111924631 -7820267 + (TA)n Simple_repeat Simple_repeat 2 50 0 1696 186 39 57 chr13 111925107 111925547 -7819351 - MSTB1 LTR MaLR 0 432 1 643 238 45 7 chr13 111925663 111925906 -7818992 - MLT1I LTR MaLR 0 409 83 491 181 221 0 chr13 111926006 111926017 -7818881 - MER5A DNA MER1_type -14 175 168 342 0 0 0 chr13 111926017 111926055 -7818843 + (TG)n Simple_repeat Simple_repeat 2 39 0 491 181 221 0 chr13 111926055 111926170 -7818728 - MER5A DNA MER1_type -21 168 21 433 286 108 35 chr13 111927278 111927422 -7817476 - L1ME4a LINE L1 -46 6075 5943 2156 129 7 0 chr13 111927422 111927731 -7817167 + AluSx SINE Alu 1 311 -1 433 286 108 35 chr13 111927731 111927845 -7817053 - L1ME4a LINE L1 -178 5943 5798 266 317 12 125 chr13 111928128 111928349 -7816549 - L3b LINE CR1 -2 1581 1411 3674 141 38 0 chr13 111928349 111928959 -7815939 + MER41B LTR ERV1 3 635 0 266 317 12 125 chr13 111928959 111929081 -7815817 - L3b LINE CR1 -172 1411 1277 1884 115 3 34 chr13 111929904 111930199 -7814699 + AluSx SINE Alu 1 286 -26 261 256 28 147 chr13 111930209 111930420 -7814478 - MIR SINE MIR 0 262 77 229 259 18 27 chr13 111931410 111931522 -7813376 + L1ME3A LINE L1 5922 6032 -138 1293 203 148 5 chr13 111931562 111931946 -7812952 + MLT1C LTR MaLR 20 458 -9 380 256 64 8 chr13 111931957 111932082 -7812816 + L1ME3A LINE L1 6039 6170 0 21 71 0 0 chr13 111933275 111933317 -7811581 + AT_rich Low_complexity Low_complexity 1 42 0 1974 139 0 0 chr13 111933950 111934230 -7810668 + AluSx SINE Alu 1 280 -32 1244 75 6 0 chr13 111934230 111934403 -7810495 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 183 167 0 0 chr13 111934621 111934651 -7810247 - L2 LINE L2 -36 3236 3207 25 51 0 0 chr13 111936259 111936298 -7808600 + AT_rich Low_complexity Low_complexity 1 39 0 513 294 43 14 chr13 111936507 111936786 -7808112 + L1ME4a LINE L1 5541 5827 -294 22 35 0 0 chr13 111936956 111936985 -7807913 + AT_rich Low_complexity Low_complexity 1 29 0 2166 160 10 2 chr13 111937173 111937573 -7807325 - L1MC3 LINE L1 -21 7764 7362 304 255 11 85 chr13 111939262 111939356 -7805542 + L2 LINE L2 3186 3272 0 235 222 0 19 chr13 111939909 111939963 -7804935 + MIR SINE MIR 99 151 -111 * 609 293 158 0 chr13 111939959 111940174 -7804724 - MIR SINE MIR 0 262 14 190 254 51 0 chr13 111940197 111940256 -7804642 + MIR SINE MIR 144 205 -57 210 320 15 120 chr13 111940291 111940491 -7804407 - L2 LINE L2 -83 3189 3011 435 285 145 41 chr13 111940982 111941203 -7803695 - L3 LINE CR1 -28 1549 1306 560 243 164 0 chr13 111944234 111944386 -7800512 - MER45A DNA AcHobo -1 177 1 527 280 93 88 chr13 111945092 111945208 -7799690 - L1ME4a LINE L1 -192 5929 5815 1797 154 6 41 chr13 111945208 111945526 -7799372 - AluSx SINE Alu -5 307 1 527 280 93 88 chr13 111945526 111945752 -7799146 - L1ME4a LINE L1 -306 5815 5585 256 257 27 0 chr13 111946309 111946383 -7798515 + G-rich Low_complexity Low_complexity 4 79 0 305 268 94 0 chr13 111946606 111946733 -7798165 + L2 LINE L2 3170 3308 -5 759 225 206 30 chr13 111946917 111947319 -7797579 - MLT1D LTR MaLR -4 463 24 325 313 23 17 chr13 111947376 111947552 -7797346 + LTR16A LTR ERVL 111 287 -163 269 349 46 7 chr13 111948546 111948698 -7796200 + MIR SINE MIR 105 262 0 313 311 68 16 chr13 111949434 111949624 -7795274 - L1ME3A LINE L1 -9 6161 5962 291 239 106 67 chr13 111949652 111949832 -7795066 - MIR SINE MIR -48 214 28 461 312 24 39 chr13 111950038 111950243 -7794655 - MIR SINE MIR -36 226 25 288 0 0 0 chr13 111951565 111951597 -7793301 + (CA)n Simple_repeat Simple_repeat 2 33 0 2391 119 73 14 chr13 111951642 111951986 -7792912 + THE1B LTR MaLR 1 364 0 189 357 51 32 chr13 111952046 111952203 -7792695 - L2 LINE L2 -188 3084 2925 205 358 0 15 chr13 111952880 111952947 -7791951 - L2 LINE L2 -6 3266 3201 525 332 102 28 chr13 111953326 111953965 -7790933 - L2 LINE L2 -528 2786 2101 25 0 0 0 chr13 111954061 111954086 -7790812 + AT_rich Low_complexity Low_complexity 1 25 0 321 296 178 12 chr13 111954319 111954488 -7790410 - MIR SINE MIR -18 244 48 335 267 53 47 chr13 111954979 111955129 -7789769 - HAL1 LINE L1 -2244 263 113 297 51 0 0 chr13 111955136 111955175 -7789723 + (TG)n Simple_repeat Simple_repeat 1 39 0 361 326 42 21 chr13 111956077 111956221 -7788677 - HAL1b LINE L1 -1184 164 18 285 29 0 0 chr13 111956563 111956597 -7788301 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1993 159 0 0 chr13 111956801 111957103 -7787795 - AluSx SINE Alu -10 302 1 662 292 20 15 chr13 111958023 111958218 -7786680 + MIR3 SINE MIR 10 205 -3 228 324 72 18 chr13 111960413 111960524 -7784374 + MIR SINE MIR 16 132 -76 411 21 0 0 chr13 111961406 111961454 -7783444 + (CA)n Simple_repeat Simple_repeat 1 48 0 1184 199 57 0 chr13 111962028 111962239 -7782659 - MER58A DNA MER1_type 0 224 2 1518 225 59 55 chr13 111962295 111962752 -7782146 + MLT1D LTR MaLR 13 471 -34 26 30 0 0 chr13 111962796 111962829 -7782069 + AT_rich Low_complexity Low_complexity 1 33 0 184 359 88 44 chr13 111963257 111963825 -7781073 + L2 LINE L2 548 1140 -2174 185 295 0 16 chr13 111963936 111963997 -7780901 - L3 LINE CR1 -389 1188 1129 266 344 112 0 chr13 111964525 111964650 -7780248 + MLT1K LTR MaLR 163 301 -287 436 308 71 28 chr13 111964721 111964903 -7779995 + MLT1K LTR MaLR 395 584 -4 1546 112 42 0 chr13 111964945 111965159 -7779739 + AluSx SINE Alu 7 229 -83 813 125 0 0 chr13 111965160 111965272 -7779626 + AluSg/x SINE Alu 175 286 -24 267 31 0 0 chr13 111965280 111965312 -7779586 + (TA)n Simple_repeat Simple_repeat 2 33 0 1557 147 71 4 chr13 111965363 111965615 -7779283 + MER47A DNA MER2_type 1 269 -97 24 0 0 0 chr13 111966449 111966473 -7778425 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 111966685 111966713 -7778185 + AT_rich Low_complexity Low_complexity 1 28 0 212 57 0 29 chr13 111966775 111966810 -7778088 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 45620 36 0 2 chr13 111966810 111972952 -7771946 - L1PA3 LINE L1 -24 6131 1 26 0 0 0 chr13 111972983 111973009 -7771889 + AT_rich Low_complexity Low_complexity 1 26 0 1581 198 20 3 chr13 111973484 111973777 -7771121 - AluJb SINE Alu -1 311 14 21 36 0 0 chr13 111974058 111974086 -7770812 + AT_rich Low_complexity Low_complexity 1 28 0 1727 106 4 0 chr13 111974390 111974616 -7770282 + AluSx SINE Alu 1 227 -85 2150 113 0 0 chr13 111975253 111975565 -7769333 + AluSx SINE Alu 1 312 0 469 299 123 33 chr13 111975858 111976069 -7768829 + MIR SINE MIR 33 262 0 889 344 49 21 chr13 111976071 111976496 -7768402 - L3 LINE CR1 0 1577 1141 296 308 88 44 chr13 111977467 111977694 -7767204 - L2 LINE L2 -210 3062 2826 217 371 49 21 chr13 111977803 111977946 -7766952 - L2 LINE L2 -1097 2217 2071 2113 127 0 0 chr13 111978140 111978449 -7766449 - AluSx SINE Alu 0 309 1 863 285 179 42 chr13 111978789 111979380 -7765518 + L2 LINE L2 2182 2897 -416 523 286 103 0 chr13 111979380 111979565 -7765333 + MER105 DNA DNA 1 204 0 863 285 179 42 chr13 111979565 111979718 -7765180 + L2 LINE L2 2897 3028 -285 1103 72 7 0 chr13 111979727 111979866 -7765032 + AluY SINE Alu 1 140 -171 2706 123 18 0 chr13 111980047 111980446 -7764452 + L1PA10 LINE L1 5682 6087 -81 527 186 0 12 chr13 111980446 111980532 -7764366 + FRAM SINE Alu 30 114 -62 1289 163 0 0 chr13 111980532 111980728 -7764170 + AluSg/x SINE Alu 85 280 -32 985 49 14 21 chr13 111980728 111980872 -7764026 + (GAAA)n Simple_repeat Simple_repeat 3 145 0 218 160 20 0 chr13 111980872 111980922 -7763976 + GA-rich Low_complexity Low_complexity 1 51 0 782 158 28 8 chr13 111980938 111981185 -7763713 + GA-rich Low_complexity Low_complexity 1 252 0 23 33 0 0 chr13 111982802 111982832 -7762066 + AT_rich Low_complexity Low_complexity 1 30 0 1717 221 38 49 chr13 111984193 111984565 -7760333 - L1ME2 LINE L1 -15 6149 5783 5179 86 9 9 chr13 111984565 111984588 -7760310 - L1PA10 LINE L1 0 6168 6146 180 0 0 0 chr13 111984588 111984608 -7760290 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 5179 86 9 9 chr13 111984608 111985258 -7759640 - L1PA10 LINE L1 -21 6147 5495 1717 221 38 49 chr13 111985258 111985441 -7759457 - L1ME2 LINE L1 -381 5783 5600 434 362 70 5 chr13 111985457 111985642 -7759256 - MIR SINE MIR -49 213 17 911 267 136 28 chr13 111985919 111986353 -7758545 - L2 LINE L2 0 3313 2833 1709 146 70 64 chr13 111986586 111986782 -7758116 - MER7A DNA MER2_type -2692 346 148 1365 73 79 0 chr13 111986782 111986959 -7757939 + L1PA5 LINE L1 5964 6154 0 1709 146 70 64 chr13 111986959 111987105 -7757793 - MER7A DNA MER2_type -2890 148 4 483 100 75 0 chr13 111987828 111987908 -7756990 - L1MA10 LINE L1 -14 6320 6235 23 33 0 0 chr13 111987992 111988022 -7756876 + AT_rich Low_complexity Low_complexity 1 30 0 2312 92 3 10 chr13 111989036 111989350 -7755548 - AluSx SINE Alu 0 312 1 2182 82 3 63 chr13 111990268 111990599 -7754299 - AluY SINE Alu 0 311 1 485 345 18 5 chr13 111991244 111991464 -7753434 + MLT1F-int LTR MaLR 390 612 -759 5742 54 6 1 chr13 111991646 111992355 -7752543 + L1PA5 LINE L1 5470 6154 0 283 263 26 26 chr13 111992457 111992533 -7752365 + MLT1F-int LTR MaLR 789 864 -507 314 262 80 118 chr13 111992670 111993083 -7751815 + MLT1F-int LTR MaLR 968 1730 -5 672 288 0 0 chr13 111993091 111993251 -7751647 + MLT1F LTR MaLR 3 162 -405 280 122 0 0 chr13 111993255 111993296 -7751602 - MLT2B2 LTR ERVL -8 512 472 770 112 0 0 chr13 111993362 111993469 -7751429 - MLT2B2 LTR ERVL -408 107 1 29307 188 45 20 chr13 111993471 111993785 -7751113 - ERVL-B2 LTR ERVL -9 5755 5450 180 111 0 0 chr13 111993785 111993812 -7751086 + (TA)n Simple_repeat Simple_repeat 1 27 0 29307 188 45 20 chr13 111993812 111994331 -7750567 - ERVL-B2 LTR ERVL -314 5450 4945 2111 133 0 3 chr13 111994331 111994633 -7750265 + AluSx SINE Alu 1 301 -11 29307 188 45 20 chr13 111994633 111998772 -7746126 - ERVL-B2 LTR ERVL -819 4945 627 2091 145 7 0 chr13 111998772 111999076 -7745822 + AluSx SINE Alu 1 306 -6 29307 188 45 20 chr13 111999076 111999718 -7745180 - ERVL-B2 LTR ERVL -5137 627 2 253 133 22 0 chr13 111999719 111999764 -7745134 - ERVL-B2 LTR ERVL 0 397 352 230 191 0 16 chr13 111999766 111999829 -7745069 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 221 120 40 0 chr13 111999860 111999910 -7744988 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1641 200 26 13 chr13 111999916 112000324 -7744574 - MLT2B2 LTR ERVL -57 458 1 990 258 64 11 chr13 112000324 112000607 -7744291 + MLT1F LTR MaLR 149 446 -96 2138 240 26 35 chr13 112000623 112001165 -7743733 - MLT1F LTR MaLR -5 537 1 383 179 0 36 chr13 112001165 112001246 -7743652 + MLT1F LTR MaLR 465 542 0 192 298 75 43 chr13 112003252 112003346 -7741552 - MIR SINE MIR -159 103 7 931 212 9 36 chr13 112003728 112003950 -7740948 - MER20 DNA MER1_type -3 216 1 1531 198 83 45 chr13 112004467 112004641 -7740257 + MLT1C LTR MaLR 6 172 -295 1991 143 0 31 chr13 112004641 112004963 -7739935 + AluSx SINE Alu 1 312 0 1531 198 83 45 chr13 112004963 112005233 -7739665 + MLT1C LTR MaLR 172 467 0 225 302 83 10 chr13 112005870 112005966 -7738932 + MIR SINE MIR 25 127 -135 21 0 0 0 chr13 112006997 112007018 -7737880 + AT_rich Low_complexity Low_complexity 1 21 0 1761 164 0 0 chr13 112007874 112008143 -7736755 - AluSx SINE Alu -17 295 27 287 336 26 0 chr13 112008759 112008872 -7736026 - L2 LINE L2 -40 3273 3158 381 392 48 0 chr13 112009742 112009969 -7734929 + MIR SINE MIR 2 239 -23 22 56 0 0 chr13 112010601 112010637 -7734261 + AT_rich Low_complexity Low_complexity 1 36 0 1673 194 0 28 chr13 112010720 112011039 -7733859 + AluJb SINE Alu 3 312 0 552 259 8 8 chr13 112011052 112011183 -7733715 + FLAM_A SINE Alu 1 131 -2 1324 228 74 15 chr13 112011469 112011863 -7733035 - MLT1C LTR MaLR 0 467 51 1644 128 117 8 chr13 112011981 112012247 -7732651 - AluSg1 SINE Alu -14 295 1 225 309 28 101 chr13 112013683 112013861 -7731037 + L2 LINE L2 2913 3077 -195 2101 119 29 35 chr13 112013874 112014251 -7730647 + THE1C LTR MaLR 1 375 0 236 291 118 45 chr13 112014317 112014427 -7730471 + L2 LINE L2 3194 3311 -2 247 261 15 0 chr13 112015193 112015258 -7729640 - MER63 DNA MER1_type -307 755 690 21 0 0 0 chr13 112015262 112015283 -7729615 + GC_rich Low_complexity Low_complexity 1 21 0 629 271 30 55 chr13 112015575 112015811 -7729087 + MIR SINE MIR 31 260 -2 1819 170 67 3 chr13 112015811 112016152 -7728746 + MER47A DNA MER2_type 4 366 0 962 233 175 31 chr13 112016165 112016616 -7728282 - L1MC4a LINE L1 0 7808 7293 1365 160 41 145 chr13 112016640 112017057 -7727841 + MSTB LTR MaLR 8 372 -54 2203 132 0 0 chr13 112017057 112017360 -7727538 + AluSg SINE Alu 1 303 -7 1365 160 41 145 chr13 112017360 112017410 -7727488 + MSTB LTR MaLR 372 426 0 306 270 102 44 chr13 112017417 112017554 -7727344 - L1MC4a LINE L1 -538 7270 7126 772 201 47 14 chr13 112018784 112018998 -7725900 - L1MA4 LINE L1 0 6300 6080 474 237 233 17 chr13 112021072 112021304 -7723594 - MLT1H LTR MaLR -182 367 86 2116 147 0 0 chr13 112021522 112021814 -7723084 - AluSx SINE Alu -20 292 1 2156 106 7 0 chr13 112022153 112022445 -7722453 + AluSx SINE Alu 1 294 -18 2684 98 69 2 chr13 112022608 112023015 -7721883 - MER57B LTR ERV1 0 434 1 402 283 108 6 chr13 112023498 112023664 -7721234 - MIR SINE MIR -65 197 15 2766 166 148 3 chr13 112023729 112024315 -7720583 + LTR51 LTR ERV1 1 671 0 1820 169 0 19 chr13 112024433 112024741 -7720157 + AluJb SINE Alu 1 302 -10 367 328 52 6 chr13 112027101 112027275 -7717623 - MIR SINE MIR -2 260 79 1993 131 10 0 chr13 112027640 112027930 -7716968 - AluSg SINE Alu -11 299 7 1067 208 40 15 chr13 112027964 112028238 -7716660 + MER39 LTR ERV1 407 687 -20 852 226 145 58 chr13 112028380 112028848 -7716050 - MER39 LTR ERV1 -25 682 6 2853 117 9 5 chr13 112029061 112029497 -7715401 + L1PB1 LINE L1 5709 6146 -5 257 321 0 36 chr13 112029662 112029746 -7715152 + MIR SINE MIR 44 124 -138 245 326 23 69 chr13 112029808 112029983 -7714915 + MIR SINE MIR 96 262 0 530 153 189 0 chr13 112030118 112030229 -7714669 + MER3 DNA MER1_type 1 132 -77 379 151 0 86 chr13 112030965 112031003 -7713895 + MER3 DNA MER1_type 125 165 -44 2220 109 10 3 chr13 112031003 112031305 -7713593 - AluSx SINE Alu -8 304 1 379 151 0 86 chr13 112031305 112031359 -7713539 + MER3 DNA MER1_type 165 209 0 258 224 0 0 chr13 112031316 112031365 -7713533 - MER3 DNA MER1_type -119 90 42 * 564 257 51 3 chr13 112031526 112031769 -7713129 + LTR37A LTR ERV1 195 455 -13 1788 126 3 86 chr13 112031781 112032106 -7712792 + AluSx SINE Alu 5 302 -10 2595 48 0 3 chr13 112033367 112033679 -7711219 + AluY SINE Alu 1 311 0 391 320 88 0 chr13 112034690 112034837 -7710061 + MIR SINE MIR 31 190 -72 2272 118 0 0 chr13 112035033 112035339 -7709559 + AluSx SINE Alu 1 306 -6 27 49 0 0 chr13 112036448 112036489 -7708409 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr13 112036765 112036797 -7708101 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr13 112037487 112037524 -7707374 + AT_rich Low_complexity Low_complexity 1 37 0 216 0 0 0 chr13 112038273 112038297 -7706601 + (T)n Simple_repeat Simple_repeat 1 24 0 1546 132 4 16 chr13 112038518 112038768 -7706130 + AluSx SINE Alu 4 250 -62 1143 158 0 0 chr13 112038871 112039054 -7705844 + AluJb SINE Alu 120 302 -10 367 328 52 6 chr13 112041414 112041588 -7703310 - MIR SINE MIR -2 260 79 1993 131 10 0 chr13 112041953 112042243 -7702655 - AluSg SINE Alu -11 299 7 1067 208 40 15 chr13 112042277 112042551 -7702347 + MER39 LTR ERV1 407 687 -20 852 226 145 58 chr13 112042693 112043161 -7701737 - MER39 LTR ERV1 -25 682 6 2853 117 9 5 chr13 112043374 112043810 -7701088 + L1PB1 LINE L1 5709 6146 -5 257 321 0 36 chr13 112043975 112044059 -7700839 + MIR SINE MIR 44 124 -138 245 326 23 69 chr13 112044121 112044296 -7700602 + MIR SINE MIR 96 262 0 530 153 189 0 chr13 112044431 112044542 -7700356 + MER3 DNA MER1_type 1 132 -77 379 151 0 86 chr13 112045278 112045316 -7699582 + MER3 DNA MER1_type 125 165 -44 2220 109 10 3 chr13 112045316 112045618 -7699280 - AluSx SINE Alu -8 304 1 379 151 0 86 chr13 112045618 112045672 -7699226 + MER3 DNA MER1_type 165 209 0 258 224 0 0 chr13 112045629 112045678 -7699220 - MER3 DNA MER1_type -119 90 42 * 591 252 51 3 chr13 112045839 112046082 -7698816 + LTR37A LTR ERV1 195 455 -13 1788 126 3 86 chr13 112046094 112046419 -7698479 + AluSx SINE Alu 5 302 -10 2419 92 0 0 chr13 112047680 112047986 -7696912 + AluSg SINE Alu 1 306 -4 27 49 0 0 chr13 112049094 112049135 -7695763 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr13 112049411 112049443 -7695455 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr13 112050133 112050170 -7694728 + AT_rich Low_complexity Low_complexity 1 37 0 225 0 0 0 chr13 112050920 112050945 -7693953 + (T)n Simple_repeat Simple_repeat 1 25 0 2228 113 3 0 chr13 112051165 112051465 -7693433 + AluSx SINE Alu 4 304 -8 2212 111 0 22 chr13 112052050 112052365 -7692533 + AluSx SINE Alu 1 308 -4 216 0 0 0 chr13 112053104 112053128 -7691770 + (T)n Simple_repeat Simple_repeat 1 24 0 239 305 130 15 chr13 112053568 112053699 -7691199 - L2 LINE L2 0 3313 3168 1898 100 8 0 chr13 112054430 112054680 -7690218 + AluSx SINE Alu 59 310 -2 584 292 87 20 chr13 112054833 112055028 -7689870 - MIR SINE MIR -8 254 47 336 24 0 0 chr13 112055079 112055120 -7689778 + (CAT)n Simple_repeat Simple_repeat 2 42 0 912 241 19 51 chr13 112055134 112055244 -7689654 - MIR SINE MIR -11 251 139 2431 115 95 23 chr13 112055244 112055285 -7689613 - MSTA LTR MaLR 0 428 391 2275 95 3 7 chr13 112055285 112055589 -7689309 + AluSq SINE Alu 1 303 -10 2431 115 95 23 chr13 112055589 112055946 -7688952 - MSTA LTR MaLR -37 391 1 912 241 19 51 chr13 112055946 112056092 -7688806 - MIR SINE MIR -123 139 3 286 379 35 0 chr13 112056093 112056262 -7688636 - L2 LINE L2 -959 2355 2181 1891 159 3 0 chr13 112056932 112057228 -7687670 - AluSx SINE Alu -1 311 15 1876 129 14 134 chr13 112057372 112057798 -7687100 + THE1C LTR MaLR 1 375 0 2437 93 0 0 chr13 112058060 112058370 -7686528 - AluY SINE Alu -1 310 1 2357 87 0 3 chr13 112058611 112058910 -7685988 - AluSq SINE Alu -15 298 1 246 62 0 0 chr13 112060059 112060091 -7684807 + (TCTCTG)n Simple_repeat Simple_repeat 5 36 0 283 234 65 78 chr13 112061131 112061285 -7683613 + HAL1 LINE L1 2247 2398 -109 233 0 62 0 chr13 112061704 112061736 -7683162 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 316 261 109 29 chr13 112061928 112062066 -7682832 + MIR SINE MIR 111 259 -3 288 53 0 0 chr13 112062735 112062773 -7682125 + (CA)n Simple_repeat Simple_repeat 2 39 0 28 48 0 0 chr13 112062866 112062908 -7681990 + AT_rich Low_complexity Low_complexity 1 42 0 462 214 47 157 chr13 112063532 112064052 -7680846 - MER45 DNA AcHobo -428 525 77 1215 223 17 88 chr13 112064772 112065190 -7679708 - MLT1B LTR MaLR -2 388 1 2175 105 0 23 chr13 112065194 112065498 -7679400 - AluSx SINE Alu -15 297 1 210 71 0 0 chr13 112065566 112065594 -7679304 + (A)n Simple_repeat Simple_repeat 1 28 0 2717 98 20 27 chr13 112067351 112067837 -7677061 - MER1A DNA MER1_type -5 524 1 376 340 13 20 chr13 112067970 112068120 -7676778 + MER5A DNA MER1_type 2 150 -39 1114 244 109 26 chr13 112068151 112068463 -7676435 - MER58B DNA MER1_type 0 341 4 2086 131 0 0 chr13 112068925 112069216 -7675682 - AluSx SINE Alu -21 291 1 197 256 50 91 chr13 112070675 112070796 -7674102 + MIR SINE MIR 24 139 -123 185 327 106 19 chr13 112070814 112070918 -7673980 - MER5A DNA MER1_type 0 189 77 340 248 95 19 chr13 112070918 112071023 -7673875 + MER77 LTR ERV1 42 154 -451 435 254 66 62 chr13 112071241 112071466 -7673432 + MER77 LTR ERV1 462 729 -4 815 104 15 67 chr13 112071543 112071678 -7673220 + FLAM_C SINE Alu 2 129 -14 464 322 99 24 chr13 112072073 112072455 -7672443 - L1ME3 LINE L1 -282 5880 5470 466 297 111 18 chr13 112072469 112072802 -7672096 - L1ME3 LINE L1 -783 5363 5000 1425 133 130 65 chr13 112073077 112073370 -7671528 - AluJb SINE Alu 0 312 1 615 165 0 0 chr13 112073504 112073589 -7671309 - AluJ/FLAM SINE Alu -226 86 2 247 314 102 37 chr13 112073591 112073836 -7671062 - L1ME3 LINE L1 -1920 4226 3966 293 326 69 27 chr13 112073853 112074377 -7670521 - L1ME3 LINE L1 -2386 3760 3215 1918 129 0 0 chr13 112074397 112074691 -7670207 - AluSq SINE Alu 0 315 22 239 167 0 56 chr13 112074691 112074745 -7670153 - AluSp SINE Alu -133 170 120 2163 107 3 0 chr13 112074822 112075120 -7669778 - AluY SINE Alu -12 299 1 955 279 35 80 chr13 112075368 112076076 -7668822 - L1MC5 LINE L1 -724 7237 6535 252 0 0 0 chr13 112076248 112076276 -7668622 + (TA)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr13 112076275 112076299 -7668599 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 1186 296 86 10 chr13 112076299 112076802 -7668096 - L1MC5 LINE L1 -1884 5924 5384 225 356 89 4 chr13 112076802 112077083 -7667815 - L1MC5 LINE L1 -3621 2525 2221 1734 179 34 3 chr13 112077374 112077665 -7667233 - AluJb SINE Alu -12 300 1 352 256 32 0 chr13 112077761 112077875 -7667023 - L1PA15-16 LINE L1 -965 2245 2143 23 0 0 0 chr13 112078353 112078376 -7666522 + AT_rich Low_complexity Low_complexity 1 23 0 1991 106 8 4 chr13 112079214 112079479 -7665419 - AluSq SINE Alu -47 266 1 2062 134 3 0 chr13 112079887 112080177 -7664721 + AluSx SINE Alu 5 295 -17 189 107 0 0 chr13 112080220 112080248 -7664650 + (CA)n Simple_repeat Simple_repeat 1 28 0 252 192 0 0 chr13 112080318 112080370 -7664528 - L1ME LINE L1 -301 5820 5769 307 141 0 3 chr13 112081128 112081182 -7663716 - MLT2F LTR ERVL 0 663 345 203 125 25 0 chr13 112081184 112081224 -7663674 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 587 228 95 109 chr13 112081232 112081579 -7663319 - MLT2C1 LTR ERVL -54 343 2 290 323 68 31 chr13 112082530 112082691 -7662207 + MIR3 SINE MIR 28 194 -14 2051 138 0 3 chr13 112083074 112083364 -7661534 + AluSx SINE Alu 1 289 -23 234 278 72 41 chr13 112084869 112084966 -7659932 + MER5A DNA MER1_type 71 170 -19 195 129 0 0 chr13 112086028 112086059 -7658839 + (A)n Simple_repeat Simple_repeat 1 31 0 310 262 164 25 chr13 112086845 112086967 -7657931 - L2 LINE L2 -1 3271 3133 180 314 109 45 chr13 112087159 112087379 -7657519 + MIR SINE MIR 14 247 -15 225 304 14 14 chr13 112087993 112088062 -7656836 + L2 LINE L2 3201 3269 -3 1999 146 63 28 chr13 112089292 112089654 -7655244 - THE1C LTR MaLR 0 375 1 763 334 84 61 chr13 112089886 112090796 -7654102 + L2 LINE L2 295 1237 -2077 2357 89 0 0 chr13 112090796 112091089 -7653809 + AluSg SINE Alu 1 293 -17 763 334 84 61 chr13 112091089 112091267 -7653631 + L2 LINE L2 1237 1409 -1905 460 268 10 0 chr13 112091541 112091638 -7653260 + MIR SINE MIR 3 100 -162 261 268 109 54 chr13 112091638 112092079 -7652819 - HAL1 LINE L1 -1164 1343 879 491 353 108 0 chr13 112092886 112093090 -7651808 - MIR SINE MIR -16 246 21 1793 154 3 7 chr13 112093364 112093656 -7651242 + AluJb SINE Alu 1 291 -21 346 200 256 40 chr13 112093710 112093835 -7651063 - MER53 DNA DNA 0 189 38 265 340 73 21 chr13 112093859 112094050 -7650848 + L3 LINE CR1 808 1008 -569 217 364 102 34 chr13 112094060 112094236 -7650662 + MER5A DNA MER1_type 2 189 0 441 314 139 36 chr13 112094329 112094660 -7650238 + L3 LINE CR1 1128 1492 -85 206 81 27 0 chr13 112094979 112095016 -7649882 + (CCCCG)n Simple_repeat Simple_repeat 2 39 0 197 148 0 19 chr13 112096123 112096177 -7648721 + (CGGGGG)n Simple_repeat Simple_repeat 6 58 0 375 289 0 37 chr13 112096217 112096352 -7648546 + G-rich Low_complexity Low_complexity 5 134 0 23 0 0 0 chr13 112097514 112097537 -7647361 + AT_rich Low_complexity Low_complexity 1 23 0 228 111 0 0 chr13 112099321 112099357 -7645541 + (T)n Simple_repeat Simple_repeat 1 36 0 294 50 0 0 chr13 112099824 112099864 -7645034 + (TG)n Simple_repeat Simple_repeat 1 40 0 1986 90 56 0 chr13 112100427 112100713 -7644185 + AluSc SINE Alu 1 301 0 184 276 26 112 chr13 112100813 112100965 -7643933 - L2 LINE L2 -841 2473 2335 199 91 23 23 chr13 112101223 112101267 -7643631 + (TAAAAA)n Simple_repeat Simple_repeat 3 46 0 204 333 34 64 chr13 112102051 112102318 -7642580 - L2 LINE L2 -1358 1956 1698 1356 182 17 104 chr13 112102400 112102802 -7642096 - MLT1A2 LTR MaLR -7 367 1 2008 228 93 15 chr13 112102802 112103419 -7641479 - MLT1A1-int LTR MaLR 0 1735 892 3706 208 15 32 chr13 112103582 112104393 -7640505 - MLT1A1-int LTR MaLR -938 797 1 1778 161 121 15 chr13 112104393 112104723 -7640175 - MLT1A1 LTR MaLR 0 365 1 2308 99 13 0 chr13 112105055 112105357 -7639541 + AluSx SINE Alu 1 306 -6 516 288 73 5 chr13 112105631 112105822 -7639076 + MIR SINE MIR 59 262 0 251 306 62 124 chr13 112105873 112106164 -7638734 + L2 LINE L2 2944 3216 -56 1980 170 0 0 chr13 112106335 112106646 -7638252 - AluSx SINE Alu -1 311 1 211 247 13 13 chr13 112107639 112107716 -7637182 + (TTA)n Simple_repeat Simple_repeat 2 78 0 40615 37 21 1 chr13 112107850 112113881 -7631017 - L1PA2 LINE L1 0 6155 1 4873 105 8 12 chr13 112114174 112114906 -7629992 + L1PA14 LINE L1 5431 6159 -2 213 219 0 0 chr13 112115611 112115652 -7629246 + CT-rich Low_complexity Low_complexity 2 42 0 219 36 0 0 chr13 112119323 112119351 -7625547 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2067 144 18 18 chr13 112120237 112120570 -7624328 - MER1B DNA MER1_type -4 333 1 1273 245 33 16 chr13 112120805 112121188 -7623710 + MLT2D LTR ERVL 1 444 -20 235 200 0 0 chr13 112121217 112121262 -7623636 + MLT2C1 LTR ERVL 350 394 -3 1589 186 29 0 chr13 112122187 112122467 -7622431 - AluJo SINE Alu -24 288 1 2222 105 7 0 chr13 112122479 112122774 -7622124 - AluSp SINE Alu -15 298 2 23 33 0 0 chr13 112123394 112123424 -7621474 + AT_rich Low_complexity Low_complexity 1 30 0 766 144 0 0 chr13 112123813 112123952 -7620946 + L1MA8 LINE L1 6003 6141 -150 341 189 27 23 chr13 112123953 112124221 -7620677 + (TA)n Simple_repeat Simple_repeat 1 269 0 1441 144 44 4 chr13 112124319 112124548 -7620350 + AluSx SINE Alu 43 280 -32 201 108 0 0 chr13 112124548 112124585 -7620313 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 328 257 53 26 chr13 112124805 112124918 -7619980 + L1ME LINE L1 5704 5819 -302 540 296 25 58 chr13 112125003 112125246 -7619652 + MIR SINE MIR 18 252 -10 396 82 0 0 chr13 112125288 112125349 -7619549 + (TG)n Simple_repeat Simple_repeat 1 61 0 807 300 167 28 chr13 112125529 112126442 -7618456 + L2 LINE L2 2262 3312 -1 889 136 100 0 chr13 112126471 112126611 -7618287 - AluSg/x SINE Alu -20 292 139 204 219 0 0 chr13 112127006 112127047 -7617851 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 338 233 25 49 chr13 112129042 112129234 -7615664 - L1P5 LINE L1 -689 5467 5290 2013 146 30 0 chr13 112129282 112129583 -7615315 - AluSx SINE Alu -2 310 1 406 345 105 23 chr13 112129611 112129843 -7615055 - L1M4 LINE L1 -903 5243 4965 300 27 0 0 chr13 112129843 112129880 -7615018 + (TG)n Simple_repeat Simple_repeat 2 38 0 406 345 105 23 chr13 112129880 112130036 -7614862 - L1M4 LINE L1 -1181 4965 4823 1989 150 19 3 chr13 112131184 112131491 -7613407 + AluJb SINE Alu 1 312 0 2084 131 20 3 chr13 112131532 112131838 -7613060 + AluSq SINE Alu 1 311 -2 277 176 200 47 chr13 112131867 112131952 -7612946 + MER5A DNA MER1_type 4 101 -88 807 226 56 52 chr13 112132502 112132947 -7611951 - MLT1D LTR MaLR -3 502 22 30 0 0 0 chr13 112133294 112133324 -7611574 + AT_rich Low_complexity Low_complexity 1 30 0 1439 203 127 19 chr13 112134740 112135158 -7609740 - MLT1C LTR MaLR -2 465 3 226 333 0 0 chr13 112135286 112135352 -7609546 - MIR3 SINE MIR -5 203 138 180 310 0 0 chr13 112135509 112135596 -7609302 + (TA)n Simple_repeat Simple_repeat 2 88 0 420 123 0 0 chr13 112136059 112136124 -7608774 + Alu SINE Alu 238 302 -8 4961 152 3 13 chr13 112136124 112137806 -7607092 + L1PA14 LINE L1 4480 6152 -9 30 27 0 0 chr13 112137816 112137853 -7607045 + AT_rich Low_complexity Low_complexity 1 37 0 639 168 233 25 chr13 112138511 112138713 -7606185 - MER5C DNA MER1_type -11 313 70 681 239 0 0 chr13 112138981 112139115 -7605783 - AluJo SINE Alu -178 134 1 666 340 76 35 chr13 112139618 112140080 -7604818 - L3 LINE CR1 -1062 515 35 199 257 0 0 chr13 112140462 112140497 -7604401 + L2 LINE L2 3152 3186 -86 11307 29 1 0 chr13 112141420 112143454 -7601444 + L1PA3 LINE L1 3982 6017 -138 2166 97 3 13 chr13 112144321 112144619 -7600279 - AluSg SINE Alu -15 295 1 271 122 0 0 chr13 112144619 112144660 -7600238 + MSTA LTR MaLR 388 428 0 2790 233 29 24 chr13 112144811 112145696 -7599202 + L1P LINE L1 1917 2806 -3340 998 93 25 0 chr13 112145695 112145856 -7599042 + L1P4 LINE L1 5333 5497 -664 * 701 163 7 14 chr13 112145856 112145997 -7598901 + LTR2B LTR ERV1 351 490 0 370 73 0 0 chr13 112145997 112146052 -7598846 + L1P4 LINE L1 5442 5496 -670 1581 141 43 34 chr13 112146152 112146478 -7598420 + THE1C LTR MaLR 4 332 -43 196 306 0 48 chr13 112146917 112146979 -7597919 + L2 LINE L2 3206 3264 -8 23 0 0 0 chr13 112147378 112147401 -7597497 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 112148703 112148725 -7596173 + AT_rich Low_complexity Low_complexity 1 22 0 1850 87 0 8 chr13 112151018 112151259 -7593639 + AluSx SINE Alu 62 300 -12 385 151 11 32 chr13 112152167 112152260 -7592638 - L1MB8 LINE L1 -214 5964 5874 323 174 81 35 chr13 112152280 112152366 -7592532 + L1M4b LINE L1 1553 1642 -5217 2034 166 25 112 chr13 112152366 112152967 -7591931 - L1MB8 LINE L1 -319 5865 5317 782 259 72 16 chr13 112152966 112153394 -7591504 - L1M4 LINE L1 -4857 1685 1234 * 3482 192 35 18 chr13 112153394 112153773 -7591125 - L1MB1 LINE L1 0 6979 6608 417 66 0 0 chr13 112153773 112153834 -7591064 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3482 192 35 18 chr13 112153834 112154545 -7590353 - L1MB1 LINE L1 -371 6608 5868 841 191 43 119 chr13 112154604 112154799 -7590099 - L1MB1 LINE L1 -6582 277 108 2411 90 0 0 chr13 112154799 112155109 -7589789 - AluY SINE Alu -1 310 1 841 191 43 119 chr13 112155109 112155190 -7589708 - L1MB1 LINE L1 -6751 108 22 3830 131 153 21 chr13 112156355 112156573 -7588325 + Tigger3(Golem) DNA MER2_type 1 189 -2840 1765 176 0 0 chr13 112156573 112156868 -7588030 - AluSx SINE Alu 0 312 18 3830 131 153 21 chr13 112156868 112157727 -7587171 + Tigger3(Golem) DNA MER2_type 189 3029 0 363 105 0 0 chr13 112157730 112157787 -7587111 + (TG)n Simple_repeat Simple_repeat 2 58 0 208 355 0 0 chr13 112158024 112158086 -7586812 + MER5A DNA MER1_type 9 70 -119 1284 211 113 4 chr13 112158354 112158629 -7586269 + AluJb SINE Alu 1 305 -7 3577 128 6 9 chr13 112159154 112159683 -7585215 - MER1A DNA MER1_type 0 527 1 510 271 90 43 chr13 112160165 112160420 -7584478 - L2 LINE L2 0 3313 3047 759 292 122 10 chr13 112160427 112160979 -7583919 - L2 LINE L2 -832 2482 1808 2395 96 0 10 chr13 112161517 112161830 -7583068 - AluSq SINE Alu -3 310 1 31 26 0 0 chr13 112162013 112162051 -7582847 + AT_rich Low_complexity Low_complexity 1 38 0 410 167 24 0 chr13 112162956 112163040 -7581858 + MER53 DNA DNA 103 188 -1 650 218 31 52 chr13 112163201 112163394 -7581504 + MER5A DNA MER1_type 1 189 0 263 234 26 0 chr13 112164499 112164576 -7580322 + (TA)n Simple_repeat Simple_repeat 2 80 0 2082 71 0 8 chr13 112165999 112166265 -7578633 + AluY SINE Alu 40 303 -8 313 305 0 0 chr13 112167587 112167669 -7577229 - MER5A DNA MER1_type -99 90 9 207 206 11 33 chr13 112169756 112169848 -7575050 + (CATATA)n Simple_repeat Simple_repeat 2 91 0 1563 193 13 13 chr13 112169890 112170195 -7574703 + AluJo SINE Alu 1 305 -7 369 182 0 71 chr13 112170282 112170381 -7574517 - MLT1A2 LTR MaLR -274 100 9 207 316 89 25 chr13 112171610 112171689 -7573209 + L2 LINE L2 3184 3267 -5 513 300 66 38 chr13 112172083 112172370 -7572528 - LTR16C LTR ERVL 0 491 197 5195 82 11 0 chr13 112172963 112173766 -7571132 + L1PA8A LINE L1 5200 6010 -121 945 185 12 6 chr13 112173866 112174039 -7570859 + L1PA8A LINE L1 5941 6114 -17 185 343 57 19 chr13 112175345 112175450 -7569448 - L3 LINE CR1 -15 1562 1454 290 316 124 53 chr13 112175550 112175775 -7569123 - L3 LINE CR1 -440 1137 897 508 194 31 0 chr13 112176065 112176163 -7568735 + MER20 DNA MER1_type 1 101 -118 2774 117 39 4 chr13 112226163 112226624 -7518274 + L1MA3 LINE L1 5829 6305 0 1015 237 68 24 chr13 112226657 112226994 -7517904 - MLT1C LTR MaLR -54 413 62 765 91 0 0 chr13 112226994 112227104 -7517794 + L1MA3 LINE L1 6196 6305 0 21 0 0 0 chr13 112227638 112227659 -7517239 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 112228966 112228992 -7515906 + AT_rich Low_complexity Low_complexity 1 26 0 387 41 0 0 chr13 112229218 112229267 -7515631 + (TG)n Simple_repeat Simple_repeat 2 50 0 1802 147 17 14 chr13 112229270 112229563 -7515335 - AluJb SINE Alu -18 294 1 4565 67 0 0 chr13 112230313 112230893 -7514005 + L1PA7 LINE L1 5469 6048 -106 732 134 0 0 chr13 112230962 112231074 -7513824 - AluSc SINE Alu -1 308 197 822 47 0 9 chr13 112231082 112231188 -7513710 + L1PA7 LINE L1 6049 6153 -1 1522 206 42 63 chr13 112231833 112232308 -7512590 + MLT1C LTR MaLR 3 467 0 27 0 0 0 chr13 112232690 112232717 -7512181 + AT_rich Low_complexity Low_complexity 1 27 0 584 223 0 0 chr13 112232787 112232899 -7511999 - MLT1E2-int LTR MaLR -857 514 403 1333 220 0 8 chr13 112232899 112233140 -7511758 + Tigger7 DNA MER2_type 29 267 -466 365 167 18 149 chr13 112233138 112233252 -7511646 + Tigger7 DNA MER2_type 2389 2487 0 * 366 261 19 70 chr13 112233254 112233351 -7511547 - MLT1E2-int LTR MaLR -1222 149 60 2215 96 0 0 chr13 112233351 112233660 -7511238 - AluSc SINE Alu 0 309 1 366 261 19 70 chr13 112233660 112233718 -7511180 - MLT1E2-int LTR MaLR -1311 60 1 1180 245 71 51 chr13 112233718 112234251 -7510647 - MLT1E2 LTR MaLR 0 624 52 22 0 0 0 chr13 112234842 112234864 -7510034 + AT_rich Low_complexity Low_complexity 1 22 0 348 57 0 57 chr13 112234881 112234934 -7509964 - MADE1 DNA Mariner 0 80 31 23 33 0 0 chr13 112237498 112237528 -7507370 + AT_rich Low_complexity Low_complexity 1 30 0 1913 136 0 42 chr13 112238665 112238975 -7505923 - AluSx SINE Alu -15 297 1 3207 97 24 28 chr13 112239244 112239738 -7505160 - LTR22B LTR ERVK 0 492 1 352 350 57 8 chr13 112239755 112240106 -7504792 + L1ME4a LINE L1 5502 5869 -252 380 66 0 16 chr13 112240985 112241046 -7503852 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 362 226 75 0 chr13 112241074 112241167 -7503731 + MLT1K LTR MaLR 482 581 -7 191 342 0 0 chr13 112241176 112241252 -7503646 + MIR SINE MIR 156 231 -31 1694 216 10 8 chr13 112241252 112241641 -7503257 + L1 LINE L1 4696 5085 -1061 2102 250 104 7 chr13 112241824 112242408 -7502490 - MLT1E1 LTR MaLR 0 654 14 297 206 21 82 chr13 112242454 112242551 -7502347 + MIR SINE MIR 128 218 -44 1134 202 14 14 chr13 112244546 112244769 -7500129 + AluJo SINE Alu 1 223 -89 432 295 33 0 chr13 112246098 112246220 -7498678 - L2 LINE L2 0 3313 3188 242 233 0 17 chr13 112246237 112246297 -7498601 + CT-rich Low_complexity Low_complexity 4 62 0 213 279 0 35 chr13 112246296 112246382 -7498516 + (TA)n Simple_repeat Simple_repeat 2 84 0 * 434 91 0 0 chr13 112246480 112246546 -7498352 + L1PB1 LINE L1 6085 6150 -1 247 319 0 0 chr13 112246812 112246881 -7498017 + MLT1J LTR MaLR 112 180 -331 6077 59 3 3 chr13 112247157 112247934 -7496964 + L1PA8 LINE L1 5390 6166 -6 2299 196 34 14 chr13 112248189 112248750 -7496148 - Charlie1a DNA MER1_type -44 1411 840 2760 241 35 19 chr13 112248795 112249529 -7495369 - Charlie1a DNA MER1_type -709 746 1 770 218 45 6 chr13 112249539 112249718 -7495180 - MER5A DNA MER1_type -2 187 2 433 216 80 6 chr13 112250024 112250140 -7494758 + MLT2B1 LTR ERVL 1 120 -294 537 179 117 14 chr13 112250155 112250247 -7494651 + MLT2B2 LTR ERVL 356 470 -45 2008 158 15 12 chr13 112250247 112250589 -7494309 + MER2 DNA MER2_type 1 343 -1 537 179 117 14 chr13 112250589 112250641 -7494257 + MLT2B2 LTR ERVL 470 515 0 22 0 0 0 chr13 112251305 112251327 -7493571 + AT_rich Low_complexity Low_complexity 1 22 0 762 235 83 10 chr13 112253502 112253706 -7491192 - MER20 DNA MER1_type 0 219 1 34 24 0 0 chr13 112256060 112256101 -7488797 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr13 112257513 112257536 -7487362 + AT_rich Low_complexity Low_complexity 1 23 0 188 359 82 24 chr13 112258098 112258268 -7486630 + L2 LINE L2 2911 3090 -182 1811 188 91 5 chr13 112258495 112258937 -7485961 - L1MB8 LINE L1 -219 5959 5480 875 142 33 11 chr13 112258965 112259148 -7485750 - L1MA8 LINE L1 -4 6287 6101 716 236 0 13 chr13 112259148 112259305 -7485593 + Tigger3(Golem) DNA MER2_type 3 157 -2872 * 6521 141 50 8 chr13 112259289 112260527 -7484371 + Tigger3(Golem) DNA MER2_type 1739 3028 -1 598 165 11 102 chr13 112260527 112260703 -7484195 - L1MA8 LINE L1 -190 6101 5942 8032 165 17 40 chr13 112260705 112261033 -7483865 - L1MA8 LINE L1 -509 5791 5457 1492 187 3 53 chr13 112261033 112261333 -7483565 - AluJb SINE Alu -27 285 1 8032 165 17 40 chr13 112261333 112263200 -7481698 - L1MA8 LINE L1 -843 5457 3646 823 293 124 46 chr13 112263301 112263636 -7481262 + HAL1 LINE L1 101 409 -2098 2718 26 0 0 chr13 112263636 112263944 -7480954 + AluY SINE Alu 1 308 -3 823 293 124 46 chr13 112263944 112264164 -7480734 + HAL1 LINE L1 409 610 -1897 2272 97 0 3 chr13 112264164 112264473 -7480425 + AluSc SINE Alu 1 308 -1 823 293 124 46 chr13 112264473 112264971 -7479927 + HAL1 LINE L1 610 1237 -1270 661 254 195 6 chr13 112264968 112265306 -7479592 + HAL1 LINE L1 1539 1940 -567 * 464 281 72 46 chr13 112265360 112265819 -7479079 + HAL1 LINE L1 2032 2502 -5 22 0 0 0 chr13 112266359 112266381 -7478517 + AT_rich Low_complexity Low_complexity 1 22 0 244 395 99 35 chr13 112266392 112266797 -7478101 - L2 LINE L2 -1 3271 2841 329 198 163 0 chr13 112266883 112266969 -7477929 - MIR SINE MIR -26 236 137 309 167 0 0 chr13 112268792 112268870 -7476028 + A-rich Low_complexity Low_complexity 1 78 0 213 125 0 25 chr13 112269805 112269845 -7475053 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 239 232 12 0 chr13 112271998 112272080 -7472818 + GA-rich Low_complexity Low_complexity 4 86 0 24 53 0 0 chr13 112272429 112272467 -7472431 + AT_rich Low_complexity Low_complexity 1 38 0 1402 198 31 36 chr13 112273643 112274001 -7470897 + MLT1C LTR MaLR 10 365 -102 380 235 54 25 chr13 112274003 112274136 -7470762 - MLT1B LTR MaLR -43 462 251 302 0 26 0 chr13 112274244 112274282 -7470616 + (CTACT)n Simple_repeat Simple_repeat 5 43 0 218 322 61 101 chr13 112274625 112275299 -7469599 + L2 LINE L2 2589 3272 0 812 300 83 24 chr13 112275866 112276351 -7468547 - L2 LINE L2 -26 3287 2775 184 200 0 0 chr13 112276449 112276484 -7468414 + L2 LINE L2 3236 3270 -2 199 275 29 0 chr13 112276498 112276567 -7468331 - L2 LINE L2 -941 2373 2303 448 271 39 8 chr13 112276585 112276714 -7468184 - MIR SINE MIR -21 241 109 591 263 62 17 chr13 112276923 112277102 -7467796 - MIR SINE MIR -41 221 35 1781 160 46 30 chr13 112278628 112278997 -7465901 - THE1C LTR MaLR 0 375 1 2139 99 0 0 chr13 112280545 112280864 -7464034 - AluSg SINE Alu 0 319 1 1403 283 16 110 chr13 112280891 112281389 -7463509 + MLT2A2 LTR ERVL 1 451 -2 2232 122 119 18 chr13 112281616 112282001 -7462897 + MSTA LTR MaLR 3 426 -2 350 259 18 45 chr13 112282510 112282622 -7462276 + MIR3 SINE MIR 98 206 -2 206 294 25 101 chr13 112283574 112283693 -7461205 + MIR SINE MIR 96 205 -57 728 196 6 6 chr13 112285122 112285301 -7459597 - L1MA7 LINE L1 -1 6290 6112 368 259 53 20 chr13 112285301 112285471 -7459427 - L1MA10 LINE L1 -9 6325 5991 1491 165 31 115 chr13 112285475 112285930 -7458968 + MLT2D LTR ERVL 1 512 -8 1161 223 12 71 chr13 112285958 112286187 -7458711 - L1ME2 LINE L1 -167 5997 5803 1799 171 0 16 chr13 112286187 112286496 -7458402 - AluJo SINE Alu -8 304 1 1161 223 12 71 chr13 112286496 112286687 -7458211 - L1ME2 LINE L1 -361 5803 5602 26 0 0 0 chr13 112287481 112287507 -7457391 + AT_rich Low_complexity Low_complexity 1 26 0 598 277 11 37 chr13 112288596 112288805 -7456093 - MIR SINE MIR -31 177 33 23 0 0 0 chr13 112290916 112290939 -7453959 + AT_rich Low_complexity Low_complexity 1 23 0 216 103 26 0 chr13 112290982 112291021 -7453877 + A-rich Low_complexity Low_complexity 3 42 0 228 348 35 64 chr13 112293274 112293415 -7451483 - MIR SINE MIR -2 260 124 1955 168 0 0 chr13 112293928 112294226 -7450672 + AluSx SINE Alu 1 298 -14 298 52 6 19 chr13 112294242 112294303 -7450595 + Alu SINE Alu 1 38 -264 5504 150 11 29 chr13 112294303 112294702 -7450196 - L1MA3 LINE L1 -302 6003 5599 2365 80 0 6 chr13 112294702 112295015 -7449883 - AluY SINE Alu 0 311 1 5504 150 11 29 chr13 112295015 112295621 -7449277 - L1MA3 LINE L1 -706 5599 4984 2006 125 17 0 chr13 112295621 112295909 -7448989 - AluSx SINE Alu -19 293 1 5504 150 11 29 chr13 112295909 112296732 -7448166 - L1MA3 LINE L1 -1321 4984 4211 40 21 0 0 chr13 112296742 112296789 -7448109 + AT_rich Low_complexity Low_complexity 1 47 0 382 181 48 76 chr13 112296794 112296899 -7447999 - L1MA3 LINE L1 -1920 4226 4125 232 224 0 172 chr13 112296946 112297015 -7447883 - MIR SINE MIR -3 259 222 2548 50 0 7 chr13 112297015 112297316 -7447582 - AluY SINE Alu -12 299 1 232 224 0 172 chr13 112297316 112297380 -7447518 - MIR SINE MIR -40 222 149 255 270 0 0 chr13 112297729 112297803 -7447095 - LTR16A LTR ERVL -185 265 192 1985 148 3 3 chr13 112298312 112298623 -7446275 - AluSx SINE Alu -1 311 1 330 26 0 0 chr13 112298715 112298754 -7446144 + (CA)n Simple_repeat Simple_repeat 2 40 0 35 24 0 0 chr13 112299606 112299648 -7445250 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 112300254 112300275 -7444623 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr13 112300339 112300403 -7444495 + AT_rich Low_complexity Low_complexity 1 64 0 221 226 38 0 chr13 112300845 112300898 -7444000 + CT-rich Low_complexity Low_complexity 4 58 0 22 35 0 0 chr13 112301202 112301231 -7443667 + AT_rich Low_complexity Low_complexity 1 29 0 282 183 0 0 chr13 112302345 112302416 -7442482 + CT-rich Low_complexity Low_complexity 2 72 0 2479 49 0 0 chr13 112302874 112303162 -7441736 + AluY SINE Alu 12 299 -12 1306 134 14 63 chr13 112303365 112303649 -7441249 + Tigger2a DNA MER2_type 1 270 -164 759 204 41 41 chr13 112303651 112303823 -7441075 + AluJo SINE Alu 93 264 -48 787 196 13 0 chr13 112303825 112303978 -7440920 + Tigger2a DNA MER2_type 280 434 0 324 313 67 15 chr13 112304747 112304881 -7440017 - L2 LINE L2 0 3272 3132 215 269 0 30 chr13 112305267 112305334 -7439564 + (TATG)n Simple_repeat Simple_repeat 4 68 0 1256 141 8 59 chr13 112306112 112306307 -7438591 - Tigger5 DNA MER2_type 0 2323 2142 1496 131 5 0 chr13 112306307 112306513 -7438385 - AluSq SINE Alu -19 294 88 1256 141 8 59 chr13 112306513 112306572 -7438326 - Tigger5 DNA MER2_type -181 2142 2082 260 170 11 149 chr13 112306563 112306657 -7438241 - Tigger5 DNA MER2_type -2241 82 2 * 1814 184 0 16 chr13 112308340 112308656 -7436242 + AluSx SINE Alu 1 311 -1 671 81 10 0 chr13 112308658 112308757 -7436141 + (GGAA)n Simple_repeat Simple_repeat 2 101 0 22 103 0 0 chr13 112309407 112309485 -7435413 + AT_rich Low_complexity Low_complexity 1 78 0 888 280 108 14 chr13 112309624 112310035 -7434863 - L1MC4 LINE L1 -101 7754 7272 360 0 0 0 chr13 112310055 112310095 -7434803 + (CA)n Simple_repeat Simple_repeat 1 40 0 648 272 96 50 chr13 112310108 112310505 -7434393 + L1MEc LINE L1 1429 1843 -4553 457 226 18 150 chr13 112310561 112310902 -7433996 + L1M4c LINE L1 1608 1903 -4481 331 188 2 148 chr13 112310934 112311132 -7433766 + L1M1 LINE L1 3517 3689 -3876 10519 213 51 23 chr13 112311328 112314236 -7430662 + L1M1 LINE L1 3770 6758 -807 5235 208 18 44 chr13 112314338 112315154 -7429744 - L1 LINE L1 -2532 4635 3799 5184 128 18 16 chr13 112315154 112315386 -7429512 - L1MA5A LINE L1 -1 6296 6066 696 180 0 8 chr13 112315386 112315508 -7429390 + FLAM_C SINE Alu 1 121 -12 5184 128 18 16 chr13 112315508 112316145 -7428753 - L1MA5A LINE L1 -231 6066 5425 5235 208 18 44 chr13 112316145 112316196 -7428702 - L1 LINE L1 -3368 3799 3748 12864 158 42 32 chr13 112316196 112318587 -7426311 - Tigger1 DNA MER2_type 0 2418 4 5235 208 18 44 chr13 112318587 112319137 -7425761 - L1 LINE L1 -3419 3748 3255 6179 248 55 14 chr13 112319144 112320314 -7424584 - L1 LINE L1 -3965 3202 2162 2250 108 0 16 chr13 112320314 112320628 -7424270 - AluY SINE Alu -2 309 1 6179 248 55 14 chr13 112320628 112321862 -7423036 - L1 LINE L1 -5005 2162 980 328 194 15 0 chr13 112321901 112321968 -7422930 - L1 LINE L1 -6964 204 137 1930 162 39 25 chr13 112321979 112322338 -7422560 + MER44D DNA MER2_type 72 490 -115 784 161 8 0 chr13 112322380 112322510 -7422388 + MER44D DNA MER2_type 475 605 0 271 383 37 31 chr13 112322801 112322963 -7421935 - MIR SINE MIR -79 183 21 188 350 145 43 chr13 112323055 112323406 -7421492 + L2 LINE L2 1869 2255 -1059 809 261 58 0 chr13 112323682 112323889 -7421009 + MER58A DNA MER1_type 3 221 -3 208 357 31 31 chr13 112323893 112323991 -7420907 + L2 LINE L2 2379 2476 -838 23 0 0 0 chr13 112324251 112324274 -7420624 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 112327036 112327057 -7417841 + AT_rich Low_complexity Low_complexity 1 21 0 181 302 0 0 chr13 112327329 112327392 -7417506 + MIR SINE MIR 183 245 -17 260 295 244 10 chr13 112327560 112327753 -7417145 + MIR SINE MIR 19 256 -6 557 113 0 0 chr13 112329091 112329171 -7415727 - MADE1 DNA Mariner 0 80 1 244 283 7 103 chr13 112329564 112329709 -7415189 + MIR SINE MIR 8 138 -124 713 288 59 0 chr13 112329818 112330040 -7414858 - MIR SINE MIR -5 257 23 400 272 35 9 chr13 112330011 112330125 -7414773 - L2 LINE L2 -8 3305 3189 * 211 233 0 0 chr13 112331336 112331379 -7413519 + L2 LINE L2 3261 3303 -10 292 268 140 32 chr13 112331448 112331605 -7413293 - L3 LINE CR1 -89 1488 1315 28 29 0 0 chr13 112332494 112332529 -7412369 + AT_rich Low_complexity Low_complexity 1 35 0 538 196 35 46 chr13 112334018 112334191 -7410707 - HsTC2 DNA Tc2 -99 1799 1629 812 276 13 22 chr13 112334907 112335139 -7409759 - MIR SINE MIR -9 253 24 22 35 0 0 chr13 112335193 112335222 -7409676 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 112335327 112335349 -7409549 + AT_rich Low_complexity Low_complexity 1 22 0 745 319 128 41 chr13 112335362 112336091 -7408807 - L2 LINE L2 -594 2720 2055 1647 160 52 49 chr13 112336091 112336459 -7408439 - THE1C LTR MaLR -4 371 3 745 319 128 41 chr13 112336459 112336741 -7408157 - L2 LINE L2 -1259 2055 1799 2427 158 34 2 chr13 112336741 112337153 -7407745 + MSTA LTR MaLR 1 425 -3 745 319 128 41 chr13 112337153 112337423 -7407475 - L2 LINE L2 -1515 1799 1327 627 325 48 16 chr13 112337756 112338008 -7406890 - MIR SINE MIR 0 262 3 311 323 42 42 chr13 112338341 112338533 -7406365 + L2 LINE L2 2415 2606 -708 835 182 0 47 chr13 112338626 112338796 -7406102 + MLT1A1 LTR MaLR 1 162 -203 2030 166 40 8 chr13 112338806 112339179 -7405719 - MLT1B LTR MaLR -5 385 1 515 320 65 13 chr13 112339347 112339578 -7405320 + MIR SINE MIR 17 259 -3 21 0 0 0 chr13 112340130 112340151 -7404747 + AT_rich Low_complexity Low_complexity 1 21 0 1534 196 14 4 chr13 112340354 112340630 -7404268 - AluJo SINE Alu -30 282 4 1903 147 16 7 chr13 112340975 112341281 -7403617 - AluSg SINE Alu -1 309 1 242 250 225 29 chr13 112341340 112341580 -7403318 - HAL1 LINE L1 -380 2127 1841 742 301 71 28 chr13 112341763 112342088 -7402810 - HERVL LTR ERVL -1515 4139 3801 371 307 18 24 chr13 112342402 112342568 -7402330 - HERVL LTR ERVL -2112 3373 3209 1174 341 39 19 chr13 112342606 112343177 -7401721 - HERVL LTR ERVL -2579 3185 2604 976 340 74 35 chr13 112343249 112343954 -7400944 - HERVL LTR ERVL -3266 2498 1767 587 309 33 57 chr13 112344365 112344731 -7400167 - HERVL LTR ERVL -4337 1317 961 1478 194 88 86 chr13 112345708 112346300 -7398598 - MLT1E LTR MaLR 0 593 1 1376 252 31 0 chr13 112347665 112347986 -7396912 - MER58B DNA MER1_type -6 335 5 337 353 10 0 chr13 112348338 112348440 -7396458 + L2 LINE L2 3155 3257 -15 267 321 82 30 chr13 112348431 112348565 -7396333 - MIR SINE MIR -49 213 73 * 410 340 46 39 chr13 112348782 112349064 -7395834 - HAL1 LINE L1 -1066 1441 1158 198 0 0 0 chr13 112349237 112349259 -7395639 + (TA)n Simple_repeat Simple_repeat 2 23 0 25 0 0 0 chr13 112349903 112349928 -7394970 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr13 112350206 112350227 -7394671 + AT_rich Low_complexity Low_complexity 1 21 0 183 162 0 0 chr13 112350948 112350985 -7393913 + A-rich Low_complexity Low_complexity 2 38 0 1410 211 73 48 chr13 112352095 112352549 -7392349 + MLT1C LTR MaLR 3 467 0 200 271 12 47 chr13 112352763 112352848 -7392050 - L2 LINE L2 -15 3298 3217 24 67 0 0 chr13 112352939 112352984 -7391914 + AT_rich Low_complexity Low_complexity 1 45 0 952 323 122 24 chr13 112354199 112354410 -7390488 - L2 LINE L2 -774 2540 2351 3342 87 9 4 chr13 112354410 112354861 -7390037 + MLT2A2 LTR ERVL 1 453 0 952 323 122 24 chr13 112354861 112355323 -7389575 - L2 LINE L2 -963 2351 1791 2362 65 7 3 chr13 112355323 112355632 -7389266 - AluY SINE Alu -1 310 1 952 323 122 24 chr13 112355632 112355670 -7389228 - L2 LINE L2 -1523 1791 1758 233 273 93 27 chr13 112355956 112356106 -7388792 - HAL1 LINE L1 -944 1563 1404 273 105 0 0 chr13 112356316 112356354 -7388544 + MLT1I LTR MaLR 98 135 -274 378 256 34 8 chr13 112356487 112356604 -7388294 + GA-rich Low_complexity Low_complexity 1 120 0 2463 49 0 0 chr13 112357042 112357349 -7387549 + AluY SINE Alu 1 307 0 668 190 0 84 chr13 112357450 112357505 -7387393 - FLAM_A SINE Alu -172 130 72 1637 209 7 0 chr13 112357505 112357811 -7387087 - AluSx SINE Alu -4 308 1 668 190 0 84 chr13 112357811 112357897 -7387001 - FLAM_A SINE Alu -230 72 1 2358 138 8 0 chr13 112358053 112358414 -7386484 + THE1B LTR MaLR 1 364 0 2369 123 21 16 chr13 112358466 112358839 -7386059 + THE1C LTR MaLR 1 375 0 9616 109 43 4 chr13 112358840 112360352 -7384546 + THE1C-int LTR MaLR 2 1580 0 2428 107 41 8 chr13 112360352 112360715 -7384183 + THE1C LTR MaLR 1 375 0 253 215 54 0 chr13 112360771 112360864 -7384034 - HAL1b LINE L1 -228 1120 1023 37 23 0 0 chr13 112360915 112360959 -7383939 + AT_rich Low_complexity Low_complexity 1 44 0 350 332 24 71 chr13 112361408 112361619 -7383279 - HAL1 LINE L1 -698 1809 1609 231 213 113 0 chr13 112361780 112361860 -7383038 - L1MC4 LINE L1 -1340 6702 6614 * 233 167 125 0 chr13 112361793 112361865 -7383033 + L1MC4 LINE L1 6614 6694 -1348 237 254 32 0 chr13 112363097 112363160 -7381738 + (TATG)n Simple_repeat Simple_repeat 3 67 0 5676 30 6 0 chr13 112363291 112363957 -7380941 + L1PA4 LINE L1 5468 6137 -18 333 68 0 0 chr13 112363960 112364004 -7380894 + (TA)n Simple_repeat Simple_repeat 1 44 0 188 325 93 46 chr13 112364045 112364196 -7380702 - L2 LINE L2 -559 2755 2598 273 341 66 41 chr13 112364400 112364592 -7380306 + MIR3 SINE MIR 3 207 -1 1089 147 28 14 chr13 112366393 112366704 -7378194 - LTR47A LTR ERVL -86 366 2 3814 175 53 40 chr13 112366710 112367864 -7377034 - MER4B-int LTR ERV1 -688 6070 4835 3706 241 54 6 chr13 112367856 112368727 -7376171 - MER4B-int LTR ERV1 -1749 2442 1530 * 694 132 9 18 chr13 112368720 112368834 -7376064 - MER4B-int LTR ERV1 -2454 4304 4192 * 341 375 109 34 chr13 112368902 112369313 -7375585 - L3 LINE CR1 -1 1576 1135 1402 256 33 26 chr13 112370189 112370843 -7374055 + L1M4c LINE L1 2103 2761 -3621 1707 193 0 10 chr13 112370843 112371148 -7373750 - AluJb SINE Alu -10 302 1 1402 256 33 26 chr13 112371148 112371251 -7373647 + L1M4c LINE L1 2761 2862 -3520 1118 190 35 16 chr13 112371254 112371564 -7373334 + L1M4 LINE L1 5207 5514 -660 21 0 0 0 chr13 112421900 112421921 -7322977 + AT_rich Low_complexity Low_complexity 1 21 0 1537 202 10 26 chr13 112422325 112422627 -7322271 - AluJo SINE Alu -15 297 1 230 160 20 0 chr13 112423510 112423560 -7321338 + CT-rich Low_complexity Low_complexity 1 51 0 2113 98 34 10 chr13 112423897 112424193 -7320705 + AluSx SINE Alu 1 303 -9 23 33 0 0 chr13 112424557 112424587 -7320311 + AT_rich Low_complexity Low_complexity 1 30 0 248 307 0 27 chr13 112426635 112426710 -7318188 - MIR SINE MIR -187 75 3 252 86 0 0 chr13 112427904 112427939 -7316959 + (A)n Simple_repeat Simple_repeat 1 35 0 377 355 71 46 chr13 112428451 112428862 -7316036 + L3 LINE CR1 1135 1555 -22 312 102 0 0 chr13 112432207 112432256 -7312642 + (TC)n Simple_repeat Simple_repeat 2 50 0 203 0 0 36 chr13 112433286 112433314 -7311584 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 208 276 17 0 chr13 112435539 112435597 -7309301 + GA-rich Low_complexity Low_complexity 3 61 0 2020 117 74 14 chr13 112435614 112435964 -7308934 + L1PB3 LINE L1 5783 6153 -1 2127 144 0 6 chr13 112435969 112436281 -7308617 + AluSx SINE Alu 1 310 -2 237 33 0 0 chr13 112437511 112437541 -7307357 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 243 220 17 0 chr13 112437905 112437964 -7306934 + (TA)n Simple_repeat Simple_repeat 1 60 0 188 67 33 0 chr13 112438684 112438714 -7306184 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 188 41 20 82 chr13 112439092 112439141 -7305757 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 2207 87 0 17 chr13 112439663 112439986 -7304912 - AluSx SINE Alu 0 318 1 180 77 0 0 chr13 112439997 112440023 -7304875 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 1387 185 9 0 chr13 112440023 112440250 -7304648 - AluJb SINE Alu -83 229 1 207 186 0 0 chr13 112440489 112440532 -7304366 + (CA)n Simple_repeat Simple_repeat 1 43 0 465 277 14 21 chr13 112441401 112441542 -7303356 - MIR SINE MIR -21 241 102 2284 89 0 3 chr13 112443299 112443591 -7301307 - AluSx SINE Alu -18 294 4 479 152 0 0 chr13 112444848 112444927 -7299971 + MER116 DNA Mariner 1 79 -1 183 42 0 0 chr13 112445173 112445197 -7299701 + (TTA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr13 112445252 112445282 -7299616 + AT_rich Low_complexity Low_complexity 1 30 0 1897 174 6 3 chr13 112445451 112445762 -7299136 + AluJb SINE Alu 1 312 0 510 311 30 64 chr13 112447467 112447726 -7297172 - MIR SINE MIR -9 253 4 1570 211 27 6 chr13 112450064 112450401 -7294497 + MER2 DNA MER2_type 1 344 0 743 32 11 0 chr13 112451322 112451416 -7293482 + (TCTA)n Simple_repeat Simple_repeat 1 95 0 2040 153 15 3 chr13 112451416 112451756 -7293142 - MER2 DNA MER2_type 0 344 1 1510 164 4 0 chr13 112452092 112452355 -7292543 + MER2 DNA MER2_type 2 265 -80 322 302 168 10 chr13 112453144 112453346 -7291552 - L2 LINE L2 -93 3179 2946 279 363 68 48 chr13 112453456 112453809 -7291089 - L2 LINE L2 -488 2826 2467 1577 207 69 31 chr13 112453824 112454274 -7290624 - MLT1C LTR MaLR 0 467 1 793 208 7 5 chr13 112454761 112455068 -7289830 + MLT1A1 LTR MaLR 1 365 0 273 239 130 11 chr13 112455068 112455160 -7289738 + MIR SINE MIR 95 197 -65 352 134 0 0 chr13 112455569 112455639 -7289259 - MSTB2 LTR MaLR 0 457 327 1435 143 87 0 chr13 112455639 112455870 -7289028 + AluSx SINE Alu 35 285 -27 563 283 36 36 chr13 112456117 112456340 -7288558 + MIR SINE MIR 17 239 -23 226 329 93 36 chr13 112456387 112456527 -7288371 + MIR SINE MIR 73 220 -42 24 67 0 0 chr13 112457241 112457286 -7287612 + AT_rich Low_complexity Low_complexity 1 45 0 309 324 120 45 chr13 112457844 112458286 -7286612 + L2 LINE L2 2839 3313 0 830 201 79 0 chr13 112463231 112463420 -7281478 - MER3 DNA MER1_type 0 209 6 251 175 18 0 chr13 112463611 112463668 -7281230 + (TA)n Simple_repeat Simple_repeat 2 59 0 273 308 110 20 chr13 112464613 112464759 -7280139 + MER5B DNA MER1_type 4 162 -16 227 289 0 0 chr13 112464772 112464824 -7280074 + MER5B DNA MER1_type 125 176 -2 22 0 0 0 chr13 112465077 112465099 -7279799 + AT_rich Low_complexity Low_complexity 1 22 0 2107 135 140 8 chr13 112465379 112465757 -7279141 + MSTA LTR MaLR 1 428 0 476 199 35 6 chr13 112467033 112467204 -7277694 + GA-rich Low_complexity Low_complexity 1 176 0 334 272 22 54 chr13 112467246 112467380 -7277518 - MLT1F1 LTR MaLR -400 167 40 534 306 186 23 chr13 112468316 112468666 -7276232 + L2 LINE L2 2818 3224 -89 23 0 0 0 chr13 112468732 112468755 -7276143 + AT_rich Low_complexity Low_complexity 1 23 0 303 304 140 12 chr13 112468845 112469016 -7275882 - MIR SINE MIR -68 194 2 304 289 139 36 chr13 112470291 112470485 -7274413 - MIR SINE MIR -1 261 48 3239 208 31 36 chr13 112470719 112471570 -7273328 - MER63C DNA MER1_type -13 917 72 1783 133 88 23 chr13 112471592 112471944 -7272954 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr13 112472939 112472968 -7271930 + AT_rich Low_complexity Low_complexity 1 29 0 259 236 47 75 chr13 112473379 112473485 -7271413 + L3 LINE CR1 1108 1210 -367 256 275 191 8 chr13 112473487 112473618 -7271280 + L3 LINE CR1 1164 1318 -259 277 124 2 0 chr13 112473633 112473680 -7271218 + MSTA LTR MaLR 379 428 0 285 291 117 0 chr13 112474573 112474676 -7270222 + L2 LINE L2 3199 3313 0 332 287 131 25 chr13 112475458 112475788 -7269110 + MLT1J1 LTR MaLR 32 432 -18 222 37 0 0 chr13 112476718 112476745 -7268153 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2074 163 0 0 chr13 112476806 112477106 -7267792 + AluSx SINE Alu 1 300 -12 261 0 0 0 chr13 112477443 112477472 -7267426 + (TC)n Simple_repeat Simple_repeat 1 29 0 304 213 83 56 chr13 112477729 112477837 -7267061 - MER81 DNA DNA -3 111 1 390 21 0 0 chr13 112477919 112477966 -7266932 + (CA)n Simple_repeat Simple_repeat 2 48 0 2225 119 36 30 chr13 112478110 112478472 -7266426 + THE1B LTR MaLR 1 364 0 240 346 0 0 chr13 112479526 112479630 -7265268 - L1MC/D LINE L1 -2017 5791 5688 1949 139 48 0 chr13 112480085 112480379 -7264519 - AluSq SINE Alu -5 308 1 251 266 142 26 chr13 112482050 112482163 -7262735 + L1MD2 LINE L1 5973 6098 -261 2600 164 61 29 chr13 112482230 112482656 -7262242 - MER44D DNA MER2_type -1891 596 93 2309 98 0 10 chr13 112482656 112482961 -7261937 - AluSc SINE Alu -7 302 1 2600 164 61 29 chr13 112482961 112483058 -7261840 - MER44D DNA MER2_type -2394 93 1 971 201 28 31 chr13 112483062 112483316 -7261582 + L1MD2 LINE L1 6099 6351 -8 235 313 66 63 chr13 112483329 112483591 -7261307 - L2 LINE L2 -202 3070 2763 912 174 10 41 chr13 112483677 112483872 -7261026 + AluJo SINE Alu 123 311 -1 1697 37 4 98 chr13 112484497 112484743 -7260155 - AluY SINE Alu -88 223 1 2610 29 0 0 chr13 112485339 112485647 -7259251 - L1PA4 LINE L1 -2 6153 5846 247 262 93 55 chr13 112485675 112485778 -7259120 + MIR SINE MIR 62 176 -86 1013 256 149 41 chr13 112485778 112486341 -7258557 + MLT1E3 LTR MaLR 1 624 0 247 262 93 55 chr13 112486341 112486420 -7258478 + MIR SINE MIR 176 251 -11 483 60 0 0 chr13 112486448 112486515 -7258383 + (TA)n Simple_repeat Simple_repeat 2 68 0 2949 6 0 0 chr13 112486869 112487187 -7257711 - AluYb8 SINE Alu 0 318 1 953 215 84 76 chr13 112487642 112488143 -7256755 + MER39 LTR ERV1 1 688 -19 1340 196 51 18 chr13 112488972 112489248 -7255650 + AluJo SINE Alu 11 295 -17 22 0 0 0 chr13 112489248 112489270 -7255628 + AT_rich Low_complexity Low_complexity 1 22 0 182 353 43 59 chr13 112489346 112489669 -7255229 - L2 LINE L2 -538 2776 2459 29 78 0 0 chr13 112489871 112489935 -7254963 + AT_rich Low_complexity Low_complexity 1 64 0 471 243 21 35 chr13 112490163 112490307 -7254591 - MLT1F1 LTR MaLR 0 542 401 553 217 69 29 chr13 112490318 112490493 -7254405 - MER53 DNA DNA -6 183 2 781 214 95 83 chr13 112490496 112490897 -7254001 - MLT1F1 LTR MaLR -137 430 25 28 61 0 0 chr13 112491442 112491491 -7253407 + AT_rich Low_complexity Low_complexity 1 49 0 207 100 0 0 chr13 112493189 112493219 -7251679 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 25 0 0 0 chr13 112493481 112493506 -7251392 + AT_rich Low_complexity Low_complexity 1 25 0 264 122 0 0 chr13 112493692 112493733 -7251165 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 2264 122 0 0 chr13 112493923 112494227 -7250671 - AluSq SINE Alu -7 306 3 885 102 34 0 chr13 112494637 112494755 -7250143 - FLAM_C SINE Alu -11 132 11 407 315 62 28 chr13 112495773 112495951 -7248947 - L2 LINE L2 -4 3309 3126 2024 135 29 35 chr13 112496320 112496697 -7248201 - THE1C LTR MaLR 0 375 1 1311 254 138 13 chr13 112497132 112497588 -7247310 + MLT1F LTR MaLR 3 515 -27 423 353 39 31 chr13 112497975 112498230 -7246668 + L1M4 LINE L1 -260 4294967292 -6284 387 0 0 0 chr13 112498291 112498334 -7246564 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2050 83 4 4 chr13 112498337 112498601 -7246297 - AluY SINE Alu -16 295 32 834 195 50 63 chr13 112498611 112499210 -7245688 + L1M4 LINE L1 94 1025 -5359 948 179 53 109 chr13 112499224 112499582 -7245316 + MLT1A2 LTR MaLR 1 338 -36 538 133 64 8 chr13 112499611 112499729 -7245169 + L1M4 LINE L1 1037 1150 -5180 266 193 21 62 chr13 112500250 112500395 -7244503 + (TA)n Simple_repeat Simple_repeat 1 139 0 1135 218 16 0 chr13 112500517 112500821 -7244077 + L1M4 LINE L1 1186 1784 -4519 * 1947 211 25 72 chr13 112500801 112501025 -7243873 + L1MB5 LINE L1 5511 5744 -430 1088 194 202 16 chr13 112501025 112501278 -7243620 + AluJb SINE Alu 1 300 -2 1947 211 25 72 chr13 112501278 112501736 -7243162 + L1MB5 LINE L1 5744 6161 -13 2360 108 0 6 chr13 112502367 112502681 -7242217 - AluSx SINE Alu 0 312 1 2494 57 0 0 chr13 112502893 112503193 -7241705 - AluSx SINE Alu -12 300 1 2084 98 0 23 chr13 112503200 112503506 -7241392 - AluSq SINE Alu -14 299 1 282 256 17 83 chr13 112503540 112503720 -7241178 + Charlie7 DNA MER1_type 471 638 -1974 577 244 120 21 chr13 112503858 112504100 -7240798 + L2 LINE L2 3048 3313 0 183 42 0 0 chr13 112504848 112504872 -7240026 + (A)n Simple_repeat Simple_repeat 1 24 0 1953 128 80 26 chr13 112505011 112505363 -7239535 + THE1C LTR MaLR 2 372 -3 1388 180 73 26 chr13 112505973 112506317 -7238581 + MER46B DNA MER2_type 2 236 0 1982 133 101 19 chr13 112506661 112507037 -7237861 - Tigger3b DNA MER2_type 0 1232 826 3429 139 45 36 chr13 112507039 112507654 -7237244 - Tigger3b DNA MER2_type -2325 703 80 2334 84 37 0 chr13 112507654 112507953 -7236945 - AluY SINE Alu -1 310 1 3429 139 45 36 chr13 112507953 112508034 -7236864 - Tigger3b DNA MER2_type -2948 80 1 253 309 63 40 chr13 112508916 112509091 -7235807 - MIR SINE MIR -36 226 48 702 273 29 13 chr13 112509199 112509434 -7235464 - MIR SINE MIR -7 255 11 203 266 37 64 chr13 112509458 112509567 -7235331 + MIR SINE MIR 113 218 -44 2916 131 20 0 chr13 112509660 112510118 -7234780 - L1PA16 LINE L1 0 6166 5700 225 188 0 21 chr13 112510311 112510359 -7234539 + GA-rich Low_complexity Low_complexity 1 47 0 180 97 0 0 chr13 112511686 112511717 -7233181 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 226 379 121 7 chr13 112511836 112511976 -7232922 + L2 LINE L2 3110 3265 -7 21 0 0 0 chr13 112512408 112512429 -7232469 + AT_rich Low_complexity Low_complexity 1 21 0 213 167 0 42 chr13 112512767 112512781 -7232117 + (CA)n Simple_repeat Simple_repeat 2 15 -32 2023 77 0 11 chr13 112512781 112513054 -7231844 + AluY SINE Alu 41 310 -1 213 167 0 42 chr13 112513054 112513087 -7231811 + (CA)n Simple_repeat Simple_repeat 15 47 0 2185 120 10 0 chr13 112513094 112513403 -7231495 - AluSx SINE Alu 0 312 1 1915 216 48 10 chr13 112513424 112513928 -7230970 - L1MD3 LINE L1 -11 7984 7462 1305 109 5 30 chr13 112513932 112514170 -7230728 + AluSg/x SINE Alu 109 310 0 1085 259 126 16 chr13 112514174 112514355 -7230543 - L1MD3 LINE L1 -742 7253 7093 342 80 0 0 chr13 112514355 112514405 -7230493 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1085 259 126 16 chr13 112514405 112514674 -7230224 - L1MD3 LINE L1 -902 7093 6753 208 191 95 16 chr13 112516201 112516264 -7228634 + MIR SINE MIR 81 148 -114 2701 117 24 21 chr13 112516603 112517029 -7227869 + MSTC LTR MaLR 2 428 0 26 0 0 0 chr13 112517329 112517355 -7227543 + AT_rich Low_complexity Low_complexity 1 26 0 593 270 75 11 chr13 112517439 112517522 -7227376 - MER58C DNA MER1_type -2230 190 114 258 56 0 0 chr13 112517522 112517558 -7227340 + (CA)n Simple_repeat Simple_repeat 1 36 0 593 270 75 11 chr13 112517558 112517648 -7227250 - MER58C DNA MER1_type -2306 114 6 983 166 45 72 chr13 112517685 112517950 -7226948 - L1M3 LINE L1 -665 5515 5258 800 233 148 9 chr13 112520321 112520638 -7224260 + L1ME2 LINE L1 5794 6154 -10 1519 186 25 4 chr13 112521355 112521663 -7223235 + AluJb SINE Alu 1 314 0 308 227 102 0 chr13 112521875 112521963 -7222935 + MER5B DNA MER1_type 1 97 -81 1055 80 0 27 chr13 112522142 112522292 -7222606 - AluSg/x SINE Alu -1 309 164 189 0 0 0 chr13 112522309 112522330 -7222568 + (A)n Simple_repeat Simple_repeat 1 21 0 2432 49 0 3 chr13 112522873 112523160 -7221738 - AluY SINE Alu -10 301 16 2207 114 0 0 chr13 112524801 112525099 -7219799 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr13 112525345 112525368 -7219530 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1762 136 64 0 chr13 112525370 112525634 -7219264 - AluSx SINE Alu -31 281 1 46 33 0 0 chr13 112526202 112526262 -7218636 + AT_rich Low_complexity Low_complexity 1 60 0 7607 25 1 1 chr13 112526309 112527257 -7217641 + L1PA4 LINE L1 5206 6154 -1 418 228 288 32 chr13 112527532 112527970 -7216928 + HAL1 LINE L1 797 1346 -1161 4041 91 8 110 chr13 112527980 112528718 -7216180 + MER4A LTR ERV1 2 664 0 210 439 16 5 chr13 112528810 112528999 -7215899 + L2 LINE L2 2522 2712 -602 331 250 102 55 chr13 112529395 112529523 -7215375 + L2 LINE L2 3179 3312 -1 31 26 0 0 chr13 112529902 112529940 -7214958 + AT_rich Low_complexity Low_complexity 1 38 0 7305 40 5 0 chr13 112530573 112531459 -7213439 - L1PA5 LINE L1 -2 6152 5263 591 333 49 10 chr13 112533209 112533497 -7211401 + L1MC/D LINE L1 5468 5766 -2042 639 318 10 10 chr13 112534286 112534481 -7210417 - MIR SINE MIR -64 198 4 25 31 0 0 chr13 112535530 112535562 -7209336 + AT_rich Low_complexity Low_complexity 1 32 0 417 308 129 69 chr13 112536239 112536729 -7208169 - L3 LINE CR1 -155 1422 904 197 299 109 58 chr13 112538134 112538271 -7206627 + L2 LINE L2 2623 2766 -548 1533 150 17 0 chr13 112538534 112538767 -7206131 + AluJo SINE Alu 31 267 -45 264 209 12 23 chr13 112539865 112539951 -7204947 + (TATAA)n Simple_repeat Simple_repeat 2 86 0 189 281 166 36 chr13 112540007 112540146 -7204752 - MIR SINE MIR -46 216 60 1688 178 3 11 chr13 112540229 112540516 -7204382 + AluSq SINE Alu 1 285 -28 301 189 0 0 chr13 112540543 112540596 -7204302 - L1MC4 LINE L1 -1339 6703 6651 278 218 0 13 chr13 112540615 112540693 -7204205 - L1MC4 LINE L1 -1341 6701 6625 382 265 164 42 chr13 112541068 112541257 -7203641 - MIR SINE MIR -3 259 48 1629 172 34 24 chr13 112542595 112542891 -7202007 - AluJb SINE Alu -13 299 1 378 0 0 0 chr13 112542947 112542989 -7201909 + (CA)n Simple_repeat Simple_repeat 2 43 0 2870 34 3 11 chr13 112544177 112544531 -7200367 - L1PA4 LINE L1 -3 6152 5802 442 351 11 43 chr13 112546086 112546170 -7198728 - MIR3 SINE MIR -21 187 102 521 114 13 0 chr13 112546170 112546249 -7198649 - MADE1 DNA Mariner 0 80 1 442 351 11 43 chr13 112546249 112546349 -7198549 - MIR3 SINE MIR -106 102 9 22 56 0 0 chr13 112546526 112546562 -7198336 + AT_rich Low_complexity Low_complexity 1 36 0 2500 225 27 48 chr13 112547348 112547510 -7197388 + MER82 DNA MER2_type 1 165 -488 2319 107 0 0 chr13 112547510 112547819 -7197079 - AluSx SINE Alu -3 309 1 2500 225 27 48 chr13 112547819 112548323 -7196575 + MER82 DNA MER2_type 165 653 0 1897 159 0 3 chr13 112550743 112551067 -7193831 + AluSx SINE Alu 1 323 0 306 0 0 0 chr13 112551717 112551751 -7193147 + (A)n Simple_repeat Simple_repeat 1 34 0 336 329 103 7 chr13 112552429 112552575 -7192323 + MIR SINE MIR 29 188 -74 285 256 37 0 chr13 112552701 112552783 -7192115 + HsTC2 DNA Tc2 2 86 -1812 377 214 68 58 chr13 112552832 112552935 -7191963 - MIR SINE MIR 0 262 159 186 302 172 0 chr13 112553041 112553157 -7191741 + MIR SINE MIR 68 203 -59 * 730 284 31 13 chr13 112553140 112553365 -7191533 + MIR SINE MIR 12 240 -22 2446 68 0 7 chr13 112553524 112553831 -7191067 + AluY SINE Alu 1 305 -6 510 291 57 11 chr13 112554041 112554216 -7190682 - MER5A DNA MER1_type 0 189 7 23 0 0 0 chr13 112554605 112554628 -7190270 + AT_rich Low_complexity Low_complexity 1 23 0 1850 118 0 0 chr13 112554868 112555114 -7189784 - AluSq SINE Alu -67 246 1 553 79 11 11 chr13 112555118 112555207 -7189691 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 622 247 111 0 chr13 112556077 112556239 -7188659 + MIR SINE MIR 9 188 -74 229 167 39 45 chr13 112556265 112556421 -7188477 + (TA)n Simple_repeat Simple_repeat 1 155 0 276 77 0 0 chr13 112556545 112556584 -7188314 + (CA)n Simple_repeat Simple_repeat 1 39 0 657 250 33 37 chr13 112557243 112557515 -7187383 + L1MB2 LINE L1 2030 2300 -4084 9560 220 60 19 chr13 112557515 112557978 -7186920 + L1MB2 LINE L1 2685 3128 -3279 2244 110 48 28 chr13 112557978 112558333 -7186565 + THE1B LTR MaLR 1 362 -2 9560 220 60 19 chr13 112558333 112559758 -7185140 + L1MB2 LINE L1 3128 4494 -1913 240 35 0 0 chr13 112559758 112559787 -7185111 + (CA)n Simple_repeat Simple_repeat 2 30 0 9560 220 60 19 chr13 112559787 112561443 -7183455 + L1MB2 LINE L1 4494 6393 -14 23 54 0 0 chr13 112561668 112561705 -7183193 + AT_rich Low_complexity Low_complexity 1 37 0 1933 73 0 11 chr13 112563100 112563361 -7181537 - L1PA8 LINE L1 -4 6168 5911 2244 100 3 3 chr13 112564134 112564433 -7180465 + AluSc SINE Alu 1 299 -10 2165 157 3 3 chr13 112564539 112564876 -7180022 - MER1B DNA MER1_type 0 337 1 652 184 63 68 chr13 112565413 112565603 -7179295 - MER5A DNA MER1_type 0 189 1 780 148 8 0 chr13 112565810 112565938 -7178960 + L1MB1 LINE L1 6040 6168 0 1439 243 32 10 chr13 112566457 112566865 -7178033 - MER49 LTR ERV1 0 923 507 903 188 26 16 chr13 112566869 112567061 -7177837 - MER72 LTR ERV1 -528 194 1 1110 217 42 16 chr13 112567065 112567364 -7177534 - MLT1A1 LTR MaLR 0 365 59 1070 209 108 31 chr13 112567364 112567742 -7177156 + LTR48 LTR ERV1 4 452 -335 657 231 63 67 chr13 112567757 112568012 -7176886 + LTR48B LTR ERV1 389 642 -2 246 206 41 14 chr13 112568012 112568081 -7176817 - MLT1A1 LTR MaLR -303 71 1 484 202 0 0 chr13 112568336 112568435 -7176463 + MLT1E2 LTR MaLR 528 626 0 290 322 0 0 chr13 112568576 112568663 -7176235 - MIR SINE MIR -6 256 170 529 178 137 46 chr13 112569110 112569307 -7175591 - THE1C LTR MaLR -160 215 1 1509 151 178 24 chr13 112570140 112570511 -7174387 + MSTA LTR MaLR 1 428 0 2249 130 16 24 chr13 112571768 112572146 -7172752 - THE1C LTR MaLR 0 375 1 180 0 0 0 chr13 112572192 112572212 -7172686 + (CAA)n Simple_repeat Simple_repeat 2 21 0 216 263 0 0 chr13 112572725 112572801 -7172097 + (TA)n Simple_repeat Simple_repeat 2 77 0 225 0 0 0 chr13 112572842 112572867 -7172031 + (TG)n Simple_repeat Simple_repeat 2 26 0 493 340 47 21 chr13 112572871 112573106 -7171792 + MIR SINE MIR 3 243 -19 275 158 0 18 chr13 112574255 112574312 -7170586 + CT-rich Low_complexity Low_complexity 3 58 0 21 71 0 0 chr13 112625210 112625252 -7119646 + AT_rich Low_complexity Low_complexity 1 42 0 1943 109 38 0 chr13 112625758 112626050 -7118848 + AluSg SINE Alu 5 306 0 1241 249 8 0 chr13 112626332 112626597 -7118301 + Tigger7 DNA MER2_type 1 267 -2220 429 229 10 0 chr13 112626595 112626691 -7118207 + Tigger7 DNA MER2_type 2393 2489 -2 * 1555 244 101 65 chr13 112627302 112627868 -7117030 + MLT1E LTR MaLR 8 593 0 285 286 87 8 chr13 112628034 112628160 -7116738 + MIR SINE MIR 90 225 -37 270 0 0 0 chr13 112628509 112628539 -7116359 + (T)n Simple_repeat Simple_repeat 1 30 0 743 98 27 0 chr13 112631538 112631650 -7113248 + L1MA3 LINE L1 3535 3649 -3916 6570 133 17 61 chr13 112631682 112633742 -7111156 + L1MA3 LINE L1 5756 7714 -10 368 280 179 31 chr13 112634538 112634795 -7110103 - L2 LINE L2 0 3313 3019 340 375 7 13 chr13 112634954 112635106 -7109792 - MIR SINE MIR -51 211 61 228 225 0 0 chr13 112635868 112635908 -7108990 + (CA)n Simple_repeat Simple_repeat 2 41 0 723 161 12 68 chr13 112636620 112636781 -7108117 - AluJb SINE Alu -11 301 150 182 312 110 37 chr13 112637076 112637185 -7107713 - L2 LINE L2 -252 3061 2945 307 344 131 0 chr13 112637526 112637648 -7107250 - MIR SINE MIR 0 262 125 22 35 0 0 chr13 112637648 112637677 -7107221 + AT_rich Low_complexity Low_complexity 1 29 0 26 23 0 23 chr13 112639088 112639112 -7105786 + AT_rich Low_complexity Low_complexity 1 25 -18 2045 110 0 23 chr13 112639112 112639412 -7105486 - AluSx SINE Alu -19 293 1 26 23 0 23 chr13 112639412 112639431 -7105467 + AT_rich Low_complexity Low_complexity 25 43 0 25 0 0 0 chr13 112639451 112639476 -7105422 + AT_rich Low_complexity Low_complexity 1 25 0 211 286 32 0 chr13 112639620 112639683 -7105215 + CT-rich Low_complexity Low_complexity 2 66 0 47 33 0 0 chr13 112639805 112639866 -7105032 + AT_rich Low_complexity Low_complexity 1 61 0 200 100 25 0 chr13 112640117 112640157 -7104741 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 143 61 0 chr13 112641273 112641322 -7103576 + Tigger2 DNA MER2_type 4 55 -2663 2364 77 0 29 chr13 112641322 112641633 -7103265 - AluY SINE Alu -9 302 1 2505 151 28 2 chr13 112641655 112642079 -7102819 + Tigger2 DNA MER2_type 2280 2714 -4 1996 139 0 3 chr13 112643097 112643392 -7101506 + AluSx SINE Alu 1 294 -18 439 243 21 60 chr13 112643539 112643742 -7101156 + MLT1E LTR MaLR 5 198 -369 454 221 11 0 chr13 112643755 112643850 -7101048 + MLT1F1 LTR MaLR 464 559 -8 1335 178 8 0 chr13 112643863 112644104 -7100794 - L1PA16 LINE L1 -1 6165 5923 22 35 0 0 chr13 112644340 112644369 -7100529 + AT_rich Low_complexity Low_complexity 1 29 0 217 343 105 47 chr13 112644779 112644951 -7099947 + L3 LINE CR1 1394 1575 -2 564 234 0 15 chr13 112646023 112646160 -7098738 - L1PB4 LINE L1 0 6156 6022 270 0 0 0 chr13 112647792 112647822 -7097076 + (CAT)n Simple_repeat Simple_repeat 3 32 0 2043 200 43 55 chr13 112647922 112648431 -7096467 + MLT1D LTR MaLR 3 505 0 461 250 16 0 chr13 112649308 112649436 -7095462 - L1MC4 LINE L1 -806 7236 7107 1479 210 0 4 chr13 112649445 112649755 -7095143 - AluJb SINE Alu 0 311 3 270 280 40 57 chr13 112651387 112651562 -7093336 + L2 LINE L2 2884 3055 -258 579 314 9 19 chr13 112653474 112653684 -7091214 - MIR SINE MIR -22 240 33 215 253 36 36 chr13 112653771 112653854 -7091044 + MIR3 SINE MIR 111 193 -15 2129 108 7 3 chr13 112654359 112654655 -7090243 + AluSq SINE Alu 1 297 -16 340 367 103 16 chr13 112654780 112655148 -7089750 + L3 LINE CR1 460 859 -718 21 0 0 0 chr13 112655586 112655607 -7089291 + AT_rich Low_complexity Low_complexity 1 21 0 6996 32 0 11 chr13 112655608 112656452 -7088446 - L1PA4 LINE L1 0 6155 5321 186 209 0 0 chr13 112656697 112656740 -7088158 + (CA)n Simple_repeat Simple_repeat 2 44 0 768 228 16 5 chr13 112657072 112657256 -7087642 + MER105 DNA DNA 1 186 -18 2219 147 78 0 chr13 112657292 112657687 -7087211 - MSTB LTR MaLR 0 426 1 448 311 37 19 chr13 112657724 112657885 -7087013 + MER5B DNA MER1_type 1 164 -14 452 36 0 0 chr13 112658848 112658904 -7085994 + L1PA3 LINE L1 6097 6152 -3 203 329 27 27 chr13 112659947 112660020 -7084878 + MIR3 SINE MIR 3 75 -133 1719 227 64 53 chr13 112662214 112662796 -7082102 + L1ME2 LINE L1 3759 4346 -1800 708 266 81 26 chr13 112662799 112663741 -7081157 + L1ME2 LINE L1 5162 6152 -12 1980 111 0 75 chr13 112664408 112664741 -7080157 + AluY SINE Alu 1 308 -3 22 0 0 0 chr13 112664979 112665001 -7079897 + AT_rich Low_complexity Low_complexity 1 22 0 188 343 27 0 chr13 112665957 112666030 -7078868 - MIR3 SINE MIR -6 202 128 259 293 80 0 chr13 112666318 112666393 -7078505 - L2 LINE L2 -1 3312 3232 203 156 0 0 chr13 112668061 112668093 -7076805 + GA-rich Low_complexity Low_complexity 1 32 0 257 241 172 11 chr13 112668168 112668255 -7076643 + L2 LINE L2 3212 3312 -1 504 59 0 0 chr13 112669039 112669107 -7075791 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 1985 136 0 3 chr13 112669117 112669403 -7075495 - AluSx SINE Alu -27 285 1 27 0 0 0 chr13 112669697 112669724 -7075174 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr13 112670632 112670661 -7074237 + AT_rich Low_complexity Low_complexity 1 29 0 3409 220 76 28 chr13 112670810 112671718 -7073180 - L1MD2 LINE L1 -16 6343 5392 2254 101 0 0 chr13 112671834 112672122 -7072776 - AluSc SINE Alu -21 288 1 270 0 0 0 chr13 112672291 112672321 -7072577 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 112672519 112672540 -7072358 + AT_rich Low_complexity Low_complexity 1 21 0 367 336 18 9 chr13 112672810 112672920 -7071978 + L2 LINE L2 3162 3272 0 347 171 38 9 chr13 112673032 112673137 -7071761 + CT-rich Low_complexity Low_complexity 5 112 0 465 231 63 28 chr13 112673395 112673538 -7071360 - MIR SINE MIR -6 256 109 221 288 0 0 chr13 112674510 112674569 -7070329 - L2 LINE L2 -2 3311 3253 2309 108 0 0 chr13 112674848 112675153 -7069745 + AluSx SINE Alu 2 306 -6 549 276 91 26 chr13 112675605 112675852 -7069046 - MIR SINE MIR 0 262 1 2174 149 5 16 chr13 112678139 112678514 -7066384 - THE1C LTR MaLR -2 373 3 9771 136 11 30 chr13 112678516 112680126 -7064772 - THE1C-int LTR MaLR 0 1580 1 2217 130 13 26 chr13 112680128 112680506 -7064392 - THE1C LTR MaLR -2 373 1 260 321 101 48 chr13 112680579 112680747 -7064151 + MER102a DNA MER1_type 134 310 -20 1753 158 73 17 chr13 112680834 112681189 -7063709 + THE1C LTR MaLR 1 375 0 3288 176 41 20 chr13 112681263 112681949 -7062949 - L1MC1 LINE L1 -19 6314 5615 22 35 0 0 chr13 112682231 112682260 -7062638 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 112682837 112682860 -7062038 + AT_rich Low_complexity Low_complexity 1 23 0 243 354 13 0 chr13 112683155 112683234 -7061664 - MIR3 SINE MIR -21 187 108 482 201 122 0 chr13 112684733 112684872 -7060026 - L1MC2 LINE L1 -10 6334 6179 * 944 228 22 44 chr13 112684870 112685190 -7059708 + L1M4 LINE L1 5068 5380 -766 1914 155 0 3 chr13 112685617 112685927 -7058971 - AluJb SINE Alu -3 309 1 23 68 0 0 chr13 112687052 112687096 -7057802 + AT_rich Low_complexity Low_complexity 1 44 0 378 219 0 109 chr13 112688416 112688544 -7056354 + MER77 LTR ERV1 7 120 -485 1612 223 9 6 chr13 112688555 112688887 -7056011 + MER77 LTR ERV1 273 605 0 219 375 60 35 chr13 112689008 112689240 -7055658 - MIR SINE MIR -19 243 6 241 289 79 13 chr13 112689728 112689804 -7055094 - L2 LINE L2 -43 3229 3149 332 305 142 16 chr13 112689988 112690178 -7054720 + MIR SINE MIR 49 262 0 2289 99 3 7 chr13 112690402 112690704 -7054194 - AluSp SINE Alu -11 302 2 333 219 0 0 chr13 112690715 112690788 -7054110 - L1MA10 LINE L1 -2 6332 6260 189 0 0 0 chr13 112691199 112691220 -7053678 + (TA)n Simple_repeat Simple_repeat 1 21 0 1375 247 22 30 chr13 112691561 112691818 -7053080 - MLT1A1 LTR MaLR 0 365 110 2294 134 31 11 chr13 112691818 112692175 -7052723 - THE1B LTR MaLR 0 364 1 1375 247 22 30 chr13 112692175 112692285 -7052613 - MLT1A1 LTR MaLR -255 110 1 24 85 0 0 chr13 112693471 112693530 -7051368 + AT_rich Low_complexity Low_complexity 1 59 0 2411 49 3 29 chr13 112693645 112693953 -7050945 + AluY SINE Alu 1 300 -11 22 0 0 0 chr13 112694787 112694809 -7050089 + AT_rich Low_complexity Low_complexity 1 22 0 1052 236 10 2 chr13 112695323 112695614 -7049284 + MER2 DNA MER2_type 1 345 0 2623 58 0 0 chr13 112695620 112695929 -7048969 - AluY SINE Alu -2 309 1 399 307 16 11 chr13 112696420 112696609 -7048289 + L1ME LINE L1 5630 5819 -302 2171 96 11 0 chr13 112697936 112698240 -7046658 + AluSx SINE Alu 1 307 0 1974 164 37 50 chr13 112698258 112698810 -7046088 + MLT2A2 LTR ERVL 1 553 -1 24 53 0 0 chr13 112699903 112699941 -7044957 + AT_rich Low_complexity Low_complexity 1 38 0 636 218 68 111 chr13 112700605 112701018 -7043880 + MER110A LTR ERV1 74 468 0 1078 222 62 85 chr13 112701041 112701593 -7043305 + MER67C LTR ERV1 5 506 -8 293 289 106 44 chr13 112701927 112702107 -7042791 - MIR SINE MIR -69 193 3 23 0 0 0 chr13 112702818 112702841 -7042057 + AT_rich Low_complexity Low_complexity 1 23 0 317 273 91 30 chr13 112703584 112703716 -7041182 - MIR SINE MIR -105 157 18 1490 91 45 9 chr13 112703899 112704120 -7040778 + MER30 DNA MER1_type 1 229 -1 2316 143 12 40 chr13 112705391 112705817 -7039081 + MLT2D LTR ERVL 1 414 0 193 288 62 125 chr13 112706289 112706609 -7038289 + L2 LINE L2 2973 3272 0 35 54 0 0 chr13 112707213 112707269 -7037629 + AT_rich Low_complexity Low_complexity 1 56 0 4532 170 19 9 chr13 112711006 112711883 -7033015 - L1PA13 LINE L1 -2305 3841 2953 7936 164 37 2 chr13 112711883 112714130 -7030768 + L1PA13 LINE L1 3835 6144 -19 4532 170 19 9 chr13 112714130 112714141 -7030757 - L1P LINE L1 -3193 2953 2944 180 0 0 0 chr13 112715336 112715356 -7029542 + (TTA)n Simple_repeat Simple_repeat 3 22 0 2133 101 6 25 chr13 112715449 112715765 -7029133 - AluSx SINE Alu -2 310 1 180 111 0 0 chr13 112715944 112715971 -7028927 + L2 LINE L2 3027 3053 -260 1289 208 24 45 chr13 112717019 112717307 -7027591 + AluJo SINE Alu 1 282 -30 183 162 0 0 chr13 112717323 112717360 -7027538 + (CA)n Simple_repeat Simple_repeat 2 38 0 2153 120 47 33 chr13 112720047 112720406 -7024492 - THE1B LTR MaLR 0 364 1 828 198 12 0 chr13 112722764 112722926 -7021972 - FRAM SINE Alu -12 164 1 22 35 0 0 chr13 112723283 112723312 -7021586 + AT_rich Low_complexity Low_complexity 1 29 0 703 226 22 143 chr13 112723635 112723785 -7021113 - MLT1A1 LTR MaLR -3 362 280 6372 28 3 0 chr13 112723785 112724532 -7020366 + L1PA3 LINE L1 5404 6152 -3 703 226 22 143 chr13 112724532 112724744 -7020154 - MLT1A1 LTR MaLR -85 280 44 3253 210 68 26 chr13 112726749 112727152 -7017746 + L1MA9 LINE L1 5372 5757 -555 287 25 25 0 chr13 112727152 112727192 -7017706 + (TG)n Simple_repeat Simple_repeat 2 42 0 3253 210 68 26 chr13 112727192 112727379 -7017519 + L1MA9 LINE L1 5757 5935 -377 2072 128 10 0 chr13 112727379 112727675 -7017223 + AluSx SINE Alu 5 303 -9 3253 210 68 26 chr13 112727675 112727950 -7016948 + L1MA9 LINE L1 5935 6274 -38 355 289 189 53 chr13 112728283 112729203 -7015695 - L2 LINE L2 -8 3305 2224 1945 213 63 15 chr13 112729794 112730334 -7014564 - L1MB8 LINE L1 -6 6172 5607 24 67 0 0 chr13 112730347 112730392 -7014506 + AT_rich Low_complexity Low_complexity 1 45 0 243 0 0 0 chr13 112730998 112731025 -7013873 + (A)n Simple_repeat Simple_repeat 1 27 0 239 228 102 11 chr13 112731892 112731973 -7012925 + MIR SINE MIR 45 131 -77 22 0 0 0 chr13 112732740 112732762 -7012136 + AT_rich Low_complexity Low_complexity 1 22 0 1522 194 7 17 chr13 112733202 112733512 -7011386 - AluJb SINE Alu 0 307 1 1584 209 63 43 chr13 112734074 112734515 -7010383 + MER90 LTR ERV1 94 543 -71 504 248 48 21 chr13 112734959 112735104 -7009794 - MIR SINE MIR -45 217 69 2227 110 0 3 chr13 112735516 112735815 -7009083 + AluSc SINE Alu 1 298 -11 1963 163 72 42 chr13 112735860 112736332 -7008566 - MER66B LTR ERV1 0 486 1 3170 159 24 0 chr13 112737163 112737715 -7007183 + MER34B LTR ERV1 1 565 0 398 19 0 19 chr13 112737825 112737877 -7007021 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 293 220 0 0 chr13 112738111 112738170 -7006728 - MIR SINE MIR -144 118 60 344 333 16 8 chr13 112738410 112738539 -7006359 + MIR SINE MIR 61 190 -72 433 349 64 18 chr13 112738776 112738994 -7005904 - MIR SINE MIR -16 246 19 2110 100 0 17 chr13 112740752 112741041 -7003857 + AluY SINE Alu 1 284 -27 203 0 37 0 chr13 112741045 112741072 -7003826 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1889 136 14 7 chr13 112741077 112741372 -7003526 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr13 112741654 112741684 -7003214 + AT_rich Low_complexity Low_complexity 1 30 0 451 280 29 63 chr13 112741911 112742118 -7002780 - L2 LINE L2 -1 3312 3113 22 0 0 0 chr13 112742564 112742586 -7002312 + AT_rich Low_complexity Low_complexity 1 22 0 297 285 87 72 chr13 112745226 112745328 -6999570 + Charlie2 DNA MER1_type 116 215 -2567 393 70 0 0 chr13 112745328 112745385 -6999513 + (CA)n Simple_repeat Simple_repeat 2 58 0 297 285 87 72 chr13 112745385 112745489 -6999409 + Charlie2 DNA MER1_type 215 325 -2457 1928 111 13 52 chr13 112746014 112746321 -6998577 - AluSx SINE Alu -17 295 1 1417 18 0 0 chr13 112746778 112746942 -6997956 - L1PA4 LINE L1 -3 6152 5989 315 320 138 12 chr13 112747279 112747620 -6997278 - L1ME4a LINE L1 -226 5895 5512 2630 224 37 82 chr13 112748513 112749542 -6995356 - L1ME1 LINE L1 -2 6164 5175 1966 132 50 31 chr13 112750980 112751337 -6993561 + THE1B LTR MaLR 1 364 0 242 250 33 17 chr13 112752693 112752753 -6992145 + MIR SINE MIR 64 124 -84 533 315 151 19 chr13 112753438 112753854 -6991044 + L2 LINE L2 2842 3312 -1 306 313 90 21 chr13 112754392 112754536 -6990362 - L1ME LINE L1 -406 5715 5562 1979 155 74 57 chr13 112754554 112754973 -6989925 + MSTB LTR MaLR 1 426 0 22 0 0 0 chr13 112755272 112755294 -6989604 + AT_rich Low_complexity Low_complexity 1 22 0 1070 221 100 24 chr13 112756679 112757018 -6987880 + MLT1A1 LTR MaLR 1 365 0 678 220 40 23 chr13 112757481 112757654 -6987244 + MER5A DNA MER1_type 12 187 -2 742 151 16 0 chr13 112757864 112757990 -6986908 - L1PA11 LINE L1 0 6174 6047 220 385 32 26 chr13 112758038 112758194 -6986704 - MER5A DNA MER1_type -32 157 1 3454 38 9 0 chr13 112758390 112758809 -6986089 - L1PA5 LINE L1 -1796 4350 3928 8576 45 0 9 chr13 112758810 112760653 -6984245 + L1PA5 LINE L1 4321 6154 0 1960 146 4 0 chr13 112761143 112761423 -6983475 + AluSx SINE Alu 5 285 -27 387 345 103 5 chr13 112762086 112762280 -6982618 + MIR SINE MIR 34 246 -16 201 74 0 0 chr13 112762351 112762378 -6982520 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 1653 219 44 24 chr13 112762527 112762920 -6981978 - MSTD LTR MaLR -2 394 3 221 0 0 33 chr13 112763453 112763483 -6981415 + (CA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr13 112763722 112763750 -6981148 + AT_rich Low_complexity Low_complexity 1 28 0 260 268 0 0 chr13 112764877 112764933 -6979965 + GA-rich Low_complexity Low_complexity 2 57 0 244 277 0 0 chr13 112765397 112765462 -6979436 + Charlie8 DNA MER1_type 2351 2415 -2 2133 162 19 32 chr13 112765470 112765933 -6978965 + L1MB7 LINE L1 5728 6184 0 251 263 118 0 chr13 112766924 112767000 -6977898 - Tigger5 DNA MER2_type 0 2323 2239 312 237 0 62 chr13 112767081 112767178 -6977720 - L1MC4 LINE L1 -1339 6703 6613 310 299 0 0 chr13 112767125 112767212 -6977686 + L1MC4 LINE L1 6614 6700 -1342 * 282 325 67 61 chr13 112768225 112768424 -6976474 - L2 LINE L2 -4 3309 3113 1134 254 58 58 chr13 112768424 112768888 -6976010 + MLT1C LTR MaLR 2 465 -2 282 325 67 61 chr13 112768888 112769178 -6975720 - L2 LINE L2 -200 3113 2817 216 111 0 0 chr13 112770034 112770070 -6974828 + (TC)n Simple_repeat Simple_repeat 1 36 0 529 276 79 25 chr13 112770326 112770529 -6974369 + MIR SINE MIR 46 259 -3 607 266 87 39 chr13 112770854 112771061 -6973837 - MIR SINE MIR 0 262 46 4180 124 23 5 chr13 112771382 112772026 -6972872 - L1PA14 LINE L1 -1 6160 5505 32 26 0 0 chr13 112772239 112772278 -6972620 + AT_rich Low_complexity Low_complexity 1 39 0 1574 212 42 49 chr13 112772915 112773443 -6971455 - L1MC4 LINE L1 -24 8018 7495 22 80 0 0 chr13 112774906 112774956 -6969942 + AT_rich Low_complexity Low_complexity 1 50 0 293 324 120 0 chr13 112775599 112775707 -6969191 + L2 LINE L2 3193 3313 0 21 0 0 0 chr13 112776277 112776298 -6968600 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 112776383 112776411 -6968487 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr13 112778667 112778694 -6966204 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2055 94 0 72 chr13 112778694 112779001 -6965897 - AluSq SINE Alu -28 285 1 23 92 0 0 chr13 112779376 112779441 -6965457 + AT_rich Low_complexity Low_complexity 1 65 0 353 198 12 0 chr13 112779679 112779760 -6965138 + (TA)n Simple_repeat Simple_repeat 2 83 0 180 0 0 0 chr13 112779760 112779780 -6965118 + (GA)n Simple_repeat Simple_repeat 2 21 0 1796 144 18 0 chr13 112779888 112780173 -6964725 - AluSq SINE Alu 0 313 24 207 204 0 0 chr13 112780266 112780320 -6964578 + GA-rich Low_complexity Low_complexity 2 55 0 205 325 84 0 chr13 112780603 112780686 -6964212 - L2 LINE L2 -3 3310 3221 186 349 81 0 chr13 112781558 112781644 -6963254 - MIR SINE MIR -74 134 42 1869 231 50 8 chr13 112782047 112782545 -6962353 + MLT2B1 LTR ERVL 2 520 0 225 175 0 0 chr13 112784066 112784106 -6960792 + (CA)n Simple_repeat Simple_repeat 1 40 0 1331 272 77 13 chr13 112784511 112785047 -6959851 - L1MC4 LINE L1 -211 7831 7262 429 286 156 0 chr13 112786763 112786917 -6957981 + MER5A DNA MER1_type 12 189 0 180 0 0 0 chr13 112788476 112788496 -6956402 + (A)n Simple_repeat Simple_repeat 1 20 0 853 222 0 0 chr13 112788650 112788821 -6956077 + AluJb SINE Alu 137 307 -5 260 327 45 18 chr13 112788972 112789082 -6955816 + MIR SINE MIR 33 145 -63 22 0 0 0 chr13 112790762 112790784 -6954114 + AT_rich Low_complexity Low_complexity 1 22 0 4155 240 73 29 chr13 112790887 112791374 -6953524 - L1MD2 LINE L1 -13 6346 5882 1644 176 0 31 chr13 112791374 112791693 -6953205 - AluJb SINE Alu -3 309 1 4155 240 73 29 chr13 112791693 112792600 -6952298 - L1MD2 LINE L1 -477 5882 5016 2453 56 0 10 chr13 112792600 112792903 -6951995 + AluY SINE Alu 1 300 -11 4155 240 73 29 chr13 112792903 112793956 -6950942 - L1MD2 LINE L1 -1343 5016 3793 191 59 0 29 chr13 112793958 112793992 -6950906 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 709 12 0 0 chr13 112793999 112794083 -6950815 - L1PA3 LINE L1 -3 6152 6069 21 71 0 0 chr13 112794217 112794259 -6950639 + AT_rich Low_complexity Low_complexity 1 42 0 2162 248 92 49 chr13 112794521 112795272 -6949626 + MER21B LTR ERV1 12 794 -69 1648 234 17 24 chr13 112795603 112796065 -6948833 + LTR40b LTR ERVL 4 462 0 692 296 32 22 chr13 112796263 112796540 -6948358 + L2 LINE L2 2695 2974 -340 2574 118 0 0 chr13 112797030 112797394 -6947504 + THE1B LTR MaLR 1 364 0 309 289 0 29 chr13 112797548 112797652 -6947246 + MLT1J LTR MaLR 401 501 -10 344 302 47 91 chr13 112797697 112797929 -6946969 + L2 LINE L2 3084 3305 -8 329 348 58 0 chr13 112798673 112798811 -6946087 - MIR3 SINE MIR -13 195 50 210 208 0 0 chr13 112799481 112799534 -6945364 + (TG)n Simple_repeat Simple_repeat 2 54 0 273 301 22 44 chr13 112800525 112800661 -6944237 - MLT1J LTR MaLR -54 457 325 22 0 0 0 chr13 112802213 112802235 -6942663 + AT_rich Low_complexity Low_complexity 1 22 0 334 313 192 0 chr13 112802385 112802567 -6942331 + L2 LINE L2 2437 2653 -661 2063 132 3 0 chr13 112802603 112802891 -6942007 - AluSx SINE Alu -23 289 1 1316 26 0 0 chr13 112803176 112803330 -6941568 - L1PA2 LINE L1 -3 6152 5999 4063 17 0 0 chr13 112803332 112803793 -6941105 + L1PA2 LINE L1 5527 5987 -168 399 362 64 9 chr13 112803855 112804181 -6940717 + L2 LINE L2 2921 3264 -49 491 299 5 27 chr13 112806368 112806555 -6938343 - HAL1 LINE L1 -960 1547 1365 30 0 0 0 chr13 112806699 112806729 -6938169 + AT_rich Low_complexity Low_complexity 1 30 0 224 211 0 0 chr13 112808356 112808400 -6936498 + (CAT)n Simple_repeat Simple_repeat 1 44 0 198 337 58 0 chr13 112808467 112808553 -6936345 - MIR SINE MIR -142 120 30 202 264 92 35 chr13 112809720 112809807 -6935091 + MIR SINE MIR 119 210 -52 281 307 123 9 chr13 112811343 112811457 -6933441 + L2 LINE L2 3145 3271 -1 21 0 0 0 chr13 112813075 112813096 -6931802 + AT_rich Low_complexity Low_complexity 1 21 0 4436 81 2 7 chr13 112818976 112819579 -6925319 + L1PA7 LINE L1 5555 6154 0 212 250 0 0 chr13 112820009 112820053 -6924845 + (CA)n Simple_repeat Simple_repeat 1 44 0 187 133 44 0 chr13 112820883 112820928 -6923970 + (CA)n Simple_repeat Simple_repeat 2 48 0 861 322 65 39 chr13 112820957 112821420 -6923478 + L2 LINE L2 2004 2478 -836 446 338 53 10 chr13 112821416 112821623 -6923275 + L2 LINE L2 2935 3150 -163 * 201 206 113 103 chr13 112821649 112821746 -6923152 + L2 LINE L2 3216 3313 0 368 303 67 47 chr13 112821799 112821919 -6922979 - L1ME LINE L1 -411 5751 5635 2199 46 0 8 chr13 112821919 112822182 -6922716 + AluY SINE Alu 39 299 -12 368 303 67 47 chr13 112822182 112822464 -6922434 - L1ME LINE L1 -527 5635 5347 21 57 0 0 chr13 112822492 112822527 -6922371 + AT_rich Low_complexity Low_complexity 1 35 0 221 288 27 14 chr13 112823515 112823588 -6921310 + L2 LINE L2 3237 3310 -3 215 393 41 0 chr13 112824827 112824972 -6919926 + MIR3 SINE MIR 47 197 -11 207 225 75 12 chr13 112825143 112825223 -6919675 + MIR SINE MIR 65 149 -113 354 319 115 22 chr13 112827651 112827877 -6917021 - MIR SINE MIR -12 250 4 267 259 0 0 chr13 112829010 112829095 -6915803 + (TA)n Simple_repeat Simple_repeat 1 85 0 276 371 24 17 chr13 112829512 112829806 -6915092 + L1ME LINE L1 5389 5684 -486 1770 192 42 8 chr13 112830740 112831099 -6913799 + L1MB1 LINE L1 5535 5905 -266 751 188 0 7 chr13 112831100 112831244 -6913654 + FLAM_C SINE Alu 1 143 0 987 206 0 0 chr13 112831271 112831451 -6913447 + FRAM SINE Alu 1 172 -4 279 181 24 12 chr13 112831464 112831547 -6913351 + GA-rich Low_complexity Low_complexity 3 86 0 819 206 61 19 chr13 112831721 112831935 -6912963 + L1MB1 LINE L1 5895 6117 -51 1178 282 48 26 chr13 112831947 112832401 -6912497 + MLT2B1 LTR ERVL 1 464 -56 272 159 0 5 chr13 112832443 112832493 -6912405 + MLT2D LTR ERVL 363 406 -8 198 103 0 0 chr13 112832543 112832572 -6912326 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 202 279 0 0 chr13 112833261 112833304 -6911594 + L2 LINE L2 3258 3300 -13 181 271 21 0 chr13 112833514 112833562 -6911336 - MIR SINE MIR -67 141 93 618 278 35 31 chr13 112833928 112834155 -6910743 + MIR SINE MIR 30 257 -5 2196 122 3 3 chr13 112834309 112834620 -6910278 - AluSx SINE Alu 0 312 2 209 333 83 45 chr13 112835420 112835576 -6909322 + MIR SINE MIR 46 207 -55 420 333 130 39 chr13 112837530 112838233 -6906665 - L2 LINE L2 -64 3249 2468 629 247 82 6 chr13 112838524 112838706 -6906192 + MER3 DNA MER1_type 1 196 -13 371 283 214 0 chr13 112839168 112839313 -6905585 - MIR3 SINE MIR -7 201 26 279 54 0 0 chr13 112840479 112840516 -6904382 + (TG)n Simple_repeat Simple_repeat 2 38 0 1354 102 9 58 chr13 112841681 112841906 -6902992 + AluSp SINE Alu 89 302 -11 201 175 0 0 chr13 112841919 112841959 -6902939 + A-rich Low_complexity Low_complexity 1 40 0 245 51 26 0 chr13 112842179 112842218 -6902680 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 389 300 43 29 chr13 112843572 112843712 -6901186 - MIR3 SINE MIR -62 146 5 2988 129 6 40 chr13 112845735 112846256 -6898642 + L1MA4 LINE L1 5517 6019 -281 277 193 157 0 chr13 112846257 112846345 -6898553 + L1MB4 LINE L1 6084 6183 0 31 0 0 0 chr13 112847363 112847394 -6897504 + AT_rich Low_complexity Low_complexity 1 31 0 184 348 176 9 chr13 112848964 112849185 -6895713 + L2 LINE L2 2286 2543 -771 213 140 53 18 chr13 112849421 112849478 -6895420 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 827 87 103 0 chr13 112849514 112849640 -6895258 - MER85 DNA T2_type 0 139 1 206 217 43 0 chr13 112850010 112850056 -6894842 + L2 LINE L2 3264 3311 -2 25 0 0 0 chr13 112850186 112850211 -6894687 + AT_rich Low_complexity Low_complexity 1 25 0 1129 150 50 5 chr13 112850456 112850656 -6894242 - AluJo SINE Alu -17 295 87 198 220 0 0 chr13 112851644 112851703 -6893195 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 21 36 0 0 chr13 112852714 112852742 -6892156 + AT_rich Low_complexity Low_complexity 1 28 0 249 327 36 18 chr13 112852776 112852886 -6892012 + MIR3 SINE MIR 87 198 -10 337 221 0 53 chr13 112853151 112853246 -6891652 - L1MC4 LINE L1 -1339 6703 6614 313 235 10 41 chr13 112853167 112853265 -6891633 + L1MC4 LINE L1 6614 6708 -1334 * 315 214 17 8 chr13 112853298 112853415 -6891483 + (TA)n Simple_repeat Simple_repeat 2 119 0 727 150 36 14 chr13 112853730 112853870 -6891028 + L1PB4 LINE L1 6011 6153 -3 2224 121 65 8 chr13 112854621 112854976 -6889922 - THE1C LTR MaLR 0 375 1 407 331 7 26 chr13 112855026 112855177 -6889721 + MIR SINE MIR 67 214 -48 590 90 0 0 chr13 112855481 112855559 -6889339 - MADE1 DNA Mariner 0 80 3 257 0 30 0 chr13 112856321 112856354 -6888544 + (TTATA)n Simple_repeat Simple_repeat 1 34 0 1341 212 95 0 chr13 112856354 112856670 -6888228 + MER7A DNA MER2_type 3 346 0 23 0 0 0 chr13 112856696 112856719 -6888179 + AT_rich Low_complexity Low_complexity 1 23 0 195 152 0 0 chr13 112857604 112857650 -6887248 + (TA)n Simple_repeat Simple_repeat 1 46 0 225 0 0 0 chr13 112857837 112857862 -6887036 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 624 297 65 73 chr13 112857862 112858357 -6886541 - L2 LINE L2 -13 3300 2810 22 0 0 0 chr13 112859506 112859528 -6885370 + AT_rich Low_complexity Low_complexity 1 22 0 3024 165 84 6 chr13 112860354 112860985 -6883913 + L1MA4 LINE L1 5621 6300 0 518 273 17 40 chr13 112861286 112861462 -6883436 + MER5B DNA MER1_type 3 174 -4 362 265 250 0 chr13 112861475 112861611 -6883287 + MER5A DNA MER1_type 13 182 -7 194 339 46 0 chr13 112861793 112861858 -6883040 - L2 LINE L2 0 3272 3205 231 279 47 23 chr13 112862838 112862967 -6881931 + L1ME LINE L1 5787 5918 -203 332 320 75 19 chr13 112863779 112863974 -6880924 - MIR3 SINE MIR -58 204 2 267 103 0 0 chr13 112864065 112864104 -6880794 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1040 246 138 10 chr13 112864318 112864777 -6880121 - L1ME3A LINE L1 -213 5957 5407 339 192 0 55 chr13 112864779 112864852 -6880046 + MLT1D LTR MaLR 3 71 -434 225 0 0 0 chr13 112865119 112865144 -6879754 + (A)n Simple_repeat Simple_repeat 1 25 0 369 284 152 12 chr13 112866381 112866638 -6878260 + L1MC4a LINE L1 5592 5884 -1924 5209 185 32 3 chr13 112867495 112868591 -6876307 - L1MC2 LINE L1 -34 6310 5183 1916 159 15 0 chr13 112869843 112870176 -6874722 + L1PB1 LINE L1 5814 6151 0 2361 102 3 6 chr13 112870185 112870529 -6874369 + L1PA14 LINE L1 5817 6159 -2 265 252 114 27 chr13 112871565 112871690 -6873208 + MIR3 SINE MIR 66 201 -7 314 238 24 12 chr13 112871895 112871979 -6872919 - MLT1D LTR MaLR -412 93 9 323 256 41 16 chr13 112871987 112872108 -6872790 - MLT1D-int LTR MaLR 0 1371 1248 24 0 0 0 chr13 112872922 112872946 -6871952 + AT_rich Low_complexity Low_complexity 1 24 0 8751 176 8 19 chr13 112873446 112873713 -6871185 + L1PB1 LINE L1 3106 3375 -2776 310 115 19 0 chr13 112873713 112873765 -6871133 + MADE1 DNA Mariner 1 53 -27 8751 176 8 19 chr13 112873765 112873780 -6871118 + L1PB1 LINE L1 3375 3389 -2762 302 95 0 0 chr13 112873780 112873822 -6871076 + MADE1 DNA Mariner 31 72 -8 8751 176 8 19 chr13 112873822 112876619 -6868279 + L1PB1 LINE L1 3389 6151 0 203 333 50 0 chr13 112876636 112876696 -6868202 + L2 LINE L2 2237 2299 -1015 349 296 137 45 chr13 112877289 112877815 -6867083 - L1MEd LINE L1 -867 1623 1057 330 80 0 0 chr13 112878539 112878589 -6866309 + (CA)n Simple_repeat Simple_repeat 2 51 0 36 40 0 0 chr13 112879089 112879139 -6865759 + AT_rich Low_complexity Low_complexity 1 50 0 405 192 13 0 chr13 112879252 112879330 -6865568 - AluS SINE Alu -13 298 220 1576 109 18 0 chr13 112879540 112879760 -6865138 + AluSc SINE Alu 60 283 -26 441 0 0 0 chr13 112879760 112879809 -6865089 + (CA)n Simple_repeat Simple_repeat 2 50 0 215 77 0 26 chr13 112879808 112879847 -6865051 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 * 1585 189 3 10 chr13 112879960 112880267 -6864631 + L1MC1 LINE L1 6011 6315 -18 27 81 0 0 chr13 112882252 112882314 -6862584 + AT_rich Low_complexity Low_complexity 1 62 0 1895 274 124 35 chr13 112883011 112883922 -6860976 + L2 LINE L2 1876 2867 -447 8092 133 18 3 chr13 112885080 112886361 -6858537 - HSMAR2 DNA Mariner -1 1301 2 218 254 32 16 chr13 112886830 112886893 -6858005 + MIR3 SINE MIR 113 176 -32 183 162 0 0 chr13 112889619 112889656 -6855242 + (CA)n Simple_repeat Simple_repeat 2 38 0 284 312 167 14 chr13 112890053 112890268 -6854630 - L3 LINE CR1 -623 954 707 203 360 0 30 chr13 112890282 112890382 -6854516 + MIR SINE MIR 47 143 -65 24 0 0 0 chr13 112890442 112890466 -6854432 + AT_rich Low_complexity Low_complexity 1 24 0 428 315 115 54 chr13 112890557 112891096 -6853802 + L1ME4a LINE L1 4757 5328 -818 367 246 76 58 chr13 112891449 112891620 -6853278 - L3 LINE CR1 -1004 573 400 210 175 25 0 chr13 112892503 112892543 -6852355 + CT-rich Low_complexity Low_complexity 6 46 0 23 0 0 0 chr13 112892848 112892871 -6852027 + AT_rich Low_complexity Low_complexity 1 23 0 1507 141 40 11 chr13 112892873 112893150 -6851748 + L1MA5A LINE L1 6010 6294 -3 198 250 0 0 chr13 112893869 112893917 -6850981 - L2 LINE L2 -16 3256 3209 225 261 106 127 chr13 112894425 112894708 -6850190 + L2 LINE L2 2993 3269 -3 217 68 45 0 chr13 112895913 112895957 -6848941 + (TTTAA)n Simple_repeat Simple_repeat 4 49 0 1948 145 16 0 chr13 112896363 112896666 -6848232 - AluSx SINE Alu -4 308 1 492 299 108 0 chr13 112896728 112897042 -6847856 + L1ME4a LINE L1 5588 5935 -186 2132 138 16 37 chr13 112897888 112898271 -6846627 - THE1C LTR MaLR 0 375 1 233 274 0 0 chr13 112898710 112898761 -6846137 + L2 LINE L2 3263 3313 0 322 281 8 4 chr13 112899741 112900005 -6844893 + (TG)n Simple_repeat Simple_repeat 1 265 0 457 296 11 0 chr13 112900049 112900225 -6844673 + (TG)n Simple_repeat Simple_repeat 2 179 0 198 0 0 0 chr13 112900288 112900310 -6844588 + (TG)n Simple_repeat Simple_repeat 2 23 0 1612 150 60 4 chr13 112902324 112902590 -6842308 + AluJb SINE Alu 5 285 -27 2099 114 7 7 chr13 112904372 112904680 -6840218 + AluSg SINE Alu 1 308 -2 28 86 0 0 chr13 112904822 112904892 -6840006 + AT_rich Low_complexity Low_complexity 1 70 0 1627 99 5 0 chr13 112905707 112905962 -6838936 - AluSc SINE Alu 0 325 70 4533 163 11 17 chr13 112905982 112906821 -6838077 + L1PA16 LINE L1 5333 6166 0 229 200 0 0 chr13 112907009 112907049 -6837849 + Charlie5 DNA MER1_type 4 43 -2569 617 215 94 0 chr13 112907095 112907244 -6837654 - MER3 DNA MER1_type -46 163 1 508 380 20 0 chr13 112907412 112907657 -6837241 - MIR SINE MIR 0 262 13 23 54 0 0 chr13 112908909 112908946 -6835952 + AT_rich Low_complexity Low_complexity 1 37 0 225 342 52 47 chr13 112909390 112909583 -6835315 - MIR SINE MIR -66 196 3 2069 184 67 22 chr13 112910290 112910735 -6834163 + MLT1C LTR MaLR 1 465 -2 229 361 36 0 chr13 112911593 112911676 -6833222 - MIR SINE MIR -149 113 28 2067 136 3 3 chr13 112911940 112912241 -6832657 + AluSx SINE Alu 1 301 -11 248 284 42 21 chr13 112912958 112913044 -6831854 - MIR SINE MIR -76 132 42 1989 164 0 0 chr13 112913044 112913342 -6831556 + AluSx SINE Alu 1 298 -14 252 205 82 98 chr13 112914186 112914308 -6830590 + MIR SINE MIR 108 227 -35 2426 78 6 3 chr13 112914653 112914975 -6829923 - L1PA6 LINE L1 -1 6153 5831 2155 51 0 0 chr13 112914975 112915232 -6829666 + L1P2 LINE L1 5492 5748 -406 191 179 26 0 chr13 112916398 112916437 -6828461 - MIR SINE MIR -146 116 77 516 317 102 30 chr13 112917276 112917648 -6827250 - L1MC4a LINE L1 -1879 5929 5531 328 273 0 0 chr13 112917972 112918049 -6826849 + MLT1J LTR MaLR 68 144 -367 5402 188 32 29 chr13 112918907 112920840 -6824058 + L1MA9 LINE L1 4103 6044 -268 910 233 41 37 chr13 112920842 112921163 -6823735 + L1MA9 LINE L1 5983 6291 0 299 326 43 14 chr13 112921419 112921557 -6823341 + MIR SINE MIR 21 162 -100 21 36 0 0 chr13 112921694 112921722 -6823176 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 112922747 112922776 -6822122 + AT_rich Low_complexity Low_complexity 1 29 0 253 122 44 66 chr13 112922786 112922967 -6821931 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 230 299 0 0 chr13 112923526 112923593 -6821305 + CT-rich Low_complexity Low_complexity 3 69 0 183 299 0 65 chr13 112924094 112924171 -6820727 - MIR SINE MIR -6 256 185 331 289 82 22 chr13 112925845 112925980 -6818918 + L2 LINE L2 3161 3303 -10 2388 80 0 13 chr13 112926031 112926342 -6818556 + AluY SINE Alu 1 307 -4 210 281 164 16 chr13 112928755 112928883 -6816015 - MIR SINE MIR -10 252 106 197 325 102 45 chr13 112929243 112929400 -6815498 + L3b LINE CR1 1206 1371 -212 23 33 0 0 chr13 112929902 112929932 -6814966 + AT_rich Low_complexity Low_complexity 1 30 0 749 226 12 0 chr13 112930571 112930735 -6814163 + FRAM SINE Alu 1 166 0 1687 130 0 34 chr13 112931578 112931840 -6813058 - AluSq SINE Alu -26 287 35 207 154 19 19 chr13 112932157 112932209 -6812689 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 217 300 67 0 chr13 112933320 112933380 -6811518 + MIR SINE MIR 192 255 -7 377 305 66 23 chr13 112933743 112933930 -6810968 + MIR SINE MIR 1 192 -65 23 0 0 0 chr13 112934741 112934764 -6810134 + AT_rich Low_complexity Low_complexity 1 23 0 212 357 46 58 chr13 112934834 112935075 -6809823 - L2 LINE L2 -85 3187 2950 2302 85 0 25 chr13 112936786 112937102 -6807796 - AluSq SINE Alu -5 308 1 2274 111 7 0 chr13 112937102 112937407 -6807491 - AluSq SINE Alu -5 308 1 2179 148 30 0 chr13 112937838 112938211 -6806687 - L1PB1 LINE L1 -1 6150 5767 236 265 24 0 chr13 112938389 112938472 -6806426 + L1MC4 LINE L1 6618 6702 -1340 3347 82 10 20 chr13 112938488 112938975 -6805923 - L1P5 LINE L1 -360 5791 5310 201 39 0 0 chr13 112938976 112939002 -6805896 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6510 70 28 26 chr13 112939660 112940615 -6804283 - SVA Other Other 0 1386 430 5777 64 26 57 chr13 112940626 112941520 -6803378 - SVA Other Other -520 866 1 1029 94 0 0 chr13 112942758 112942885 -6802013 - AluSq/x SINE Alu -177 135 9 1125 99 13 0 chr13 112942888 112943039 -6801859 + AluSg/x SINE Alu 145 297 -15 236 120 20 0 chr13 112944909 112944959 -6799939 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 1076 325 58 24 chr13 112944978 112945526 -6799372 - L3 LINE CR1 -216 1361 795 1987 163 97 8 chr13 112945783 112946176 -6798722 - MSTA LTR MaLR 0 428 1 465 332 42 5 chr13 112946233 112946423 -6798475 + MIR SINE MIR 56 252 -10 1611 193 3 7 chr13 112946428 112946733 -6798165 - AluJo SINE Alu -8 304 1 260 378 0 0 chr13 112946881 112946963 -6797935 + L2 LINE L2 3188 3269 -3 545 317 46 21 chr13 112947107 112947347 -6797551 - MIR SINE MIR -15 247 2 286 289 133 16 chr13 112947642 112947770 -6797128 + MIR SINE MIR 60 202 -60 5977 20 0 1 chr13 112947794 112948487 -6796411 + L1PA3 LINE L1 5463 6154 -1 188 319 0 21 chr13 112948546 112948593 -6796305 - L2 LINE L2 -93 3179 3134 184 349 35 23 chr13 112948787 112948873 -6796025 + L2 LINE L2 3159 3245 -27 200 354 79 16 chr13 112948968 112949095 -6795803 - MIR SINE MIR -98 164 30 1987 44 4 0 chr13 112949650 112949898 -6795000 - L1PA4 LINE L1 0 6155 5907 2965 144 74 21 chr13 112951196 112951521 -6793377 - MER41C LTR ERV1 0 554 189 2225 75 7 0 chr13 112951521 112951799 -6793099 + AluSc SINE Alu 16 295 -14 2965 144 74 21 chr13 112951799 112951999 -6792899 - MER41C LTR ERV1 -365 189 1 274 121 77 22 chr13 112952002 112952093 -6792805 + (TA)n Simple_repeat Simple_repeat 2 97 0 2372 50 0 3 chr13 112953328 112953646 -6791252 + AluY SINE Alu 1 317 0 7743 23 0 0 chr13 112953837 112954785 -6790113 - L1PA2 LINE L1 0 6155 5208 186 325 73 42 chr13 112955084 112955275 -6789623 - MIR SINE MIR -15 247 51 508 300 26 43 chr13 112955286 112955519 -6789379 - MIR SINE MIR -12 250 22 23 0 0 0 chr13 112956575 112956598 -6788300 + AT_rich Low_complexity Low_complexity 1 23 0 183 258 21 10 chr13 112959074 112959171 -6785727 + (CATA)n Simple_repeat Simple_repeat 3 100 0 23 33 0 0 chr13 112960046 112960076 -6784822 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr13 112960677 112960701 -6784197 + AT_rich Low_complexity Low_complexity 1 24 0 1003 161 31 0 chr13 112960701 112960894 -6784004 - L1MB2 LINE L1 -14 6157 5959 458 88 0 0 chr13 112961100 112961168 -6783730 - L1PA5 LINE L1 -4 6150 6083 245 282 14 70 chr13 112961419 112961490 -6783408 + MIR SINE MIR 32 98 -110 763 274 55 0 chr13 112961563 112961782 -6783116 - MIR SINE MIR -4 258 28 2335 96 0 16 chr13 112962151 112962465 -6782433 - AluY SINE Alu -2 309 1 242 327 55 9 chr13 112963026 112963136 -6781762 + MER94 DNA DNA 5 119 -15 2043 126 7 0 chr13 112964032 112964334 -6780564 + AluY SINE Alu 5 308 -3 2338 97 3 0 chr13 112964786 112965096 -6779802 - AluY SINE Alu 0 311 1 186 43 0 0 chr13 112966101 112966124 -6778774 + (A)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr13 112967080 112967100 -6777798 + (TA)n Simple_repeat Simple_repeat 1 20 0 282 263 30 40 chr13 112967165 112967264 -6777634 + MER5A DNA MER1_type 6 103 -86 190 404 115 24 chr13 112967908 112968247 -6776651 - L2 LINE L2 -55 3217 2848 216 309 112 33 chr13 112968985 112969137 -6775761 - L3 LINE CR1 -240 1337 1174 306 0 0 0 chr13 112969137 112969171 -6775727 + (TG)n Simple_repeat Simple_repeat 2 35 0 402 256 23 38 chr13 112969726 112969859 -6775039 - L3 LINE CR1 -696 881 751 756 164 60 75 chr13 112970948 112971149 -6773749 - L1MA9 LINE L1 -369 5943 5746 314 222 83 0 chr13 112971151 112971259 -6773639 + L1MA9 LINE L1 6174 6290 -22 21 0 0 0 chr13 112971498 112971519 -6773379 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr13 112971562 112971605 -6773293 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr13 112971652 112971677 -6773221 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr13 112971722 112971757 -6773141 + AT_rich Low_complexity Low_complexity 1 35 0 354 290 42 22 chr13 112973393 112973520 -6771378 + Charlie5 DNA MER1_type 1 128 -113 1920 99 0 4 chr13 112973520 112973817 -6771081 + AluSg SINE Alu 33 310 0 354 290 42 22 chr13 112973817 112973892 -6771006 + Charlie5 DNA MER1_type 128 200 -41 692 187 30 45 chr13 112974026 112974224 -6770674 + Charlie5 DNA MER1_type 2391 2585 -27 369 75 0 0 chr13 112974424 112974477 -6770421 + (CA)n Simple_repeat Simple_repeat 2 54 0 229 268 14 42 chr13 112975006 112975077 -6769821 - L2 LINE L2 -10 3303 3235 1510 187 0 7 chr13 112976545 112976834 -6768064 - L1 LINE L1 -992 5154 4868 1088 123 37 0 chr13 112977257 112977419 -6767479 - THE1C LTR MaLR 0 375 208 1076 112 135 11 chr13 112977739 112977917 -6766981 - THE1C LTR MaLR -175 200 1 185 301 80 85 chr13 112978162 112978338 -6766560 - MIR3 SINE MIR -18 190 16 271 293 149 29 chr13 112979241 112979449 -6765449 - MIR SINE MIR -1 261 29 181 337 102 10 chr13 112979587 112979685 -6765213 + L2 LINE L2 2595 2701 -613 289 313 70 39 chr13 112980747 112980875 -6764023 - L2 LINE L2 0 3313 3182 2523 124 8 0 chr13 112980913 112981285 -6763613 - THE1C LTR MaLR 0 375 1 196 348 94 0 chr13 112981295 112981433 -6763465 - L2 LINE L2 -230 3083 2933 193 239 22 0 chr13 112982562 112982608 -6762290 + L2 LINE L2 3226 3272 0 3064 134 47 0 chr13 112983451 112983915 -6760983 - MER1A DNA MER1_type 0 529 44 185 142 88 0 chr13 112984140 112984253 -6760645 + (TA)n Simple_repeat Simple_repeat 1 123 0 2253 81 7 0 chr13 112984275 112984582 -6760316 - L1PA8 LINE L1 -8 6164 5856 2102 115 10 0 chr13 112984644 112984940 -6759958 + AluSg SINE Alu 1 299 -11 308 372 128 22 chr13 112986037 112986497 -6758401 + L1ME LINE L1 5337 5845 -276 276 30 0 0 chr13 112987380 112987413 -6757485 + (TG)n Simple_repeat Simple_repeat 1 33 0 412 345 67 0 chr13 112989084 112989278 -6755620 - MIR SINE MIR -51 211 5 207 0 0 0 chr13 112989417 112989440 -6755458 + (TG)n Simple_repeat Simple_repeat 2 24 0 1190 177 50 138 chr13 112989623 112990001 -6754897 + MER7A DNA MER2_type 1 343 -3 248 193 21 62 chr13 112991522 112991667 -6753231 + (TA)n Simple_repeat Simple_repeat 2 140 0 3001 104 2 5 chr13 112992010 112992453 -6752445 + L1PA13 LINE L1 5717 6158 -5 2268 102 0 7 chr13 112994073 112994368 -6750530 + AluSx SINE Alu 1 293 -19 301 231 128 67 chr13 112994544 112994739 -6750159 - MER58C DNA MER1_type 0 215 9 7164 55 5 13 chr13 112995117 112996279 -6748619 - L1PA8 LINE L1 0 6172 5033 935 68 0 0 chr13 112996755 112996872 -6748026 + AluSg SINE Alu 14 130 -180 450 0 0 0 chr13 112996888 112996938 -6747960 + (CA)n Simple_repeat Simple_repeat 1 50 0 2039 121 17 7 chr13 112996948 112997245 -6747653 + AluSc SINE Alu 1 300 -9 1794 122 93 11 chr13 112998149 112998427 -6746471 - AluSx SINE Alu -11 301 1 1826 137 0 62 chr13 112998972 112999278 -6745620 + AluJb SINE Alu 1 287 -25 204 40 0 0 chr13 112999291 112999316 -6745582 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 217 260 115 19 chr13 113001037 113001141 -6743757 - MIR SINE MIR -42 220 107 360 0 0 0 chr13 113002703 113002743 -6742155 + (TG)n Simple_repeat Simple_repeat 2 41 0 2098 118 3 7 chr13 113003319 113003623 -6741275 - AluSg SINE Alu -7 303 1 211 276 8 63 chr13 113003775 113003902 -6740996 - L2 LINE L2 -220 3052 2933 231 246 220 8 chr13 113004739 113004857 -6740041 - MIR SINE MIR -1 261 119 1072 207 0 0 chr13 113004896 113005104 -6739794 + MER3 DNA MER1_type 2 209 0 849 224 0 0 chr13 113006396 113006566 -6738332 - MER5A DNA MER1_type -14 175 6 368 350 119 16 chr13 113006598 113006901 -6737997 + L3 LINE CR1 1241 1574 -3 2298 109 3 0 chr13 113008351 113008662 -6736236 + AluSp SINE Alu 1 312 -1 793 153 77 0 chr13 113008677 113008847 -6736051 + L1MA3 LINE L1 6123 6305 0 1446 147 154 11 chr13 113009201 113009467 -6735431 - AluSg SINE Alu -6 304 1 198 328 39 31 chr13 113009748 113009876 -6735022 - MIR SINE MIR -64 144 16 604 294 128 0 chr13 113010223 113010427 -6734471 + MIR SINE MIR 6 235 -27 1488 123 0 0 chr13 113012008 113012241 -6732657 + AluSg/x SINE Alu 80 312 0 201 211 0 0 chr13 113012614 113012666 -6732232 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 277 282 0 0 chr13 113012671 113012756 -6732142 - L1MC4 LINE L1 -1344 6698 6614 374 160 0 13 chr13 113012757 113012832 -6732066 + (TA)n Simple_repeat Simple_repeat 1 74 0 1479 150 61 35 chr13 113012839 113013152 -6731746 + THE1C LTR MaLR 55 375 0 308 148 16 0 chr13 113013349 113013410 -6731488 + T-rich Low_complexity Low_complexity 5 66 0 815 194 11 28 chr13 113013413 113013593 -6731305 - FRAM SINE Alu 0 176 1 1227 57 31 0 chr13 113014680 113014839 -6730059 + L1PA11 LINE L1 6011 6174 0 22 0 0 0 chr13 113015052 113015074 -6729824 + AT_rich Low_complexity Low_complexity 1 22 0 568 244 28 51 chr13 113015697 113015914 -6728984 - LTR67 LTR ERVL -1 556 345 401 325 0 0 chr13 113015959 113016082 -6728816 - LTR67 LTR ERVL -333 224 102 2819 7 0 0 chr13 113016341 113016647 -6728251 + AluYa5 SINE Alu 1 306 -5 189 74 0 0 chr13 113017594 113017621 -6727277 + (TC)n Simple_repeat Simple_repeat 2 28 0 215 281 85 37 chr13 113017784 113017866 -6727032 - L3b LINE CR1 -234 1349 1264 210 71 0 0 chr13 113018028 113018056 -6726842 + (TA)n Simple_repeat Simple_repeat 1 28 0 208 237 92 69 chr13 113018399 113018530 -6726368 + MIR SINE MIR 74 207 -55 825 287 65 52 chr13 113019034 113019782 -6725116 + HAL1 LINE L1 1045 1802 -705 261 276 67 19 chr13 113021921 113022026 -6722872 - L2 LINE L2 0 3272 3163 223 177 165 25 chr13 113022678 113022757 -6722141 - MIR SINE MIR -147 115 26 292 225 79 11 chr13 113023117 113023206 -6721692 - L2 LINE L2 -2 3270 3176 212 304 87 11 chr13 113026525 113026617 -6718281 + MIR SINE MIR 50 148 -60 2106 161 51 21 chr13 113026772 113027202 -6717696 - MER65A LTR ERV1 0 445 3 21 0 0 0 chr13 113027526 113027547 -6717351 + AT_rich Low_complexity Low_complexity 1 21 0 804 241 18 13 chr13 113027830 113028054 -6716844 + LTR65 LTR ERV1 167 391 -278 202 422 52 7 chr13 113030058 113030212 -6714686 + L2 LINE L2 2870 3030 -242 940 154 72 6 chr13 113030488 113030791 -6714107 - MSTD LTR MaLR 0 396 1 464 182 0 0 chr13 113031677 113031754 -6713144 - AluSg/x SINE Alu -27 282 206 1041 169 6 0 chr13 113031754 113031914 -6712984 - AluJb SINE Alu -149 163 3 22 0 0 0 chr13 113032535 113032557 -6712341 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 113032716 113032740 -6712158 + AT_rich Low_complexity Low_complexity 1 24 0 1935 242 21 12 chr13 113033293 113033851 -6711047 + L1MB8 LINE L1 2238 2800 -3346 * 3649 208 38 13 chr13 113033845 113034946 -6709952 + L1MB8 LINE L1 4971 6096 -82 437 256 29 7 chr13 113034947 113035084 -6709814 + L1M4 LINE L1 2577 2716 -3430 2044 140 8 17 chr13 113035137 113035495 -6709403 - THE1A LTR MaLR 0 355 1 2837 7 0 0 chr13 113037452 113037758 -6707140 + AluY SINE Alu 1 306 -5 232 313 25 25 chr13 113037978 113038058 -6706840 + L2 LINE L2 3234 3313 0 308 304 96 32 chr13 113038083 113038208 -6706690 + L2 LINE L2 3181 3313 0 445 89 16 89 chr13 113038545 113038626 -6706272 + (TC)n Simple_repeat Simple_repeat 1 72 -42 185 0 0 39 chr13 113038626 113038652 -6706246 + (CA)n Simple_repeat Simple_repeat 1 25 0 445 89 16 89 chr13 113038652 113038693 -6706205 + (TC)n Simple_repeat Simple_repeat 72 114 0 213 319 35 35 chr13 113038998 113039111 -6705787 + L2 LINE L2 3199 3311 -2 1386 231 16 3 chr13 113040295 113040615 -6704283 + L1MD3 LINE L1 7490 7813 -182 308 104 0 0 chr13 113041176 113041224 -6703674 - Alu SINE Alu -6 295 248 508 283 81 6 chr13 113041244 113041417 -6703481 + MER5A DNA MER1_type 4 189 0 921 272 9 0 chr13 113042608 113042825 -6702073 + MIR SINE MIR 26 244 -18 282 116 0 0 chr13 113042825 113042868 -6702030 + (TTA)n Simple_repeat Simple_repeat 2 44 0 293 292 146 0 chr13 113042880 113042976 -6701922 + L2 LINE L2 3163 3272 0 2109 125 0 0 chr13 113044636 113044940 -6699958 - AluSg SINE Alu -6 304 1 267 173 0 0 chr13 113045134 113045186 -6699712 + (TG)n Simple_repeat Simple_repeat 2 53 0 273 288 132 18 chr13 113045581 113045782 -6699116 + MIR3 SINE MIR 13 237 -25 270 73 0 0 chr13 113047428 113047469 -6697429 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 369 0 0 0 chr13 113047469 113047510 -6697388 + (CA)n Simple_repeat Simple_repeat 2 42 0 38 0 0 0 chr13 113048443 113048481 -6696417 + AT_rich Low_complexity Low_complexity 1 38 0 1570 166 24 0 chr13 113049198 113049487 -6695411 - L1M3 LINE L1 -576 5607 5312 565 264 30 12 chr13 113049694 113049861 -6695037 + Charlie7 DNA MER1_type 108 277 -2335 860 248 22 15 chr13 113049902 113050172 -6694726 + Charlie7 DNA MER1_type 400 671 -1941 1248 244 99 79 chr13 113050265 113051338 -6693560 + Charlie7 DNA MER1_type 1475 2568 -44 256 345 98 45 chr13 113051343 113051964 -6692934 + L2 LINE L2 2306 2959 -355 208 357 54 36 chr13 113052059 113052171 -6692727 + L2 LINE L2 3151 3264 -8 1149 217 60 42 chr13 113052826 113053162 -6691736 - MER2 DNA MER2_type -2 342 1 274 293 121 0 chr13 113054618 113054758 -6690140 - MIR SINE MIR -19 243 87 1897 173 3 0 chr13 113054851 113055151 -6689747 - AluJb SINE Alu -11 301 1 36 0 0 0 chr13 113055402 113055438 -6689460 + AT_rich Low_complexity Low_complexity 1 36 0 242 217 58 0 chr13 113057077 113057146 -6687752 + MER5A DNA MER1_type 33 105 -84 452 263 168 0 chr13 113058343 113058522 -6686376 - MIR SINE MIR -24 238 30 22 0 0 0 chr13 113058563 113058585 -6686313 + AT_rich Low_complexity Low_complexity 1 22 0 455 315 83 26 chr13 113059135 113059437 -6685461 - MLT1J LTR MaLR -7 504 186 384 394 78 7 chr13 113059633 113059917 -6684981 + L2 LINE L2 2874 3177 -95 201 121 0 0 chr13 113060533 113060566 -6684332 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr13 113060901 113060929 -6683969 + AT_rich Low_complexity Low_complexity 1 28 0 207 354 3 0 chr13 113061126 113061202 -6683696 - MIR SINE MIR -63 145 72 732 295 26 17 chr13 113062010 113062244 -6682654 - MIR SINE MIR -5 257 22 314 221 102 0 chr13 113062344 113062453 -6682445 + MER5A DNA MER1_type 23 150 -28 881 306 33 27 chr13 113064976 113065313 -6679585 + MLT1I LTR MaLR 69 407 -2 2200 217 98 11 chr13 113066222 113066761 -6678137 + MLT1E LTR MaLR 5 590 -3 464 162 40 10 chr13 113067857 113067956 -6676942 - MLT1G LTR MaLR -3 587 486 1197 269 66 28 chr13 113068227 113068608 -6676290 - MLT1G LTR MaLR -128 462 15 218 194 0 0 chr13 113068628 113068664 -6676234 + polypyrimidine Low_complexity Low_complexity 2 37 0 269 262 16 0 chr13 113068959 113069020 -6675878 + MIR SINE MIR 111 172 -90 28 61 0 0 chr13 113069134 113069183 -6675715 + AT_rich Low_complexity Low_complexity 1 49 0 2292 122 0 0 chr13 113069483 113069794 -6675104 + AluSx SINE Alu 1 311 -1 1636 170 30 7 chr13 113070664 113070964 -6673934 - AluJo SINE Alu -5 307 1 23 33 0 0 chr13 113072496 113072526 -6672372 + AT_rich Low_complexity Low_complexity 1 30 0 2119 99 14 10 chr13 113073461 113073754 -6671144 + AluSc SINE Alu 9 302 -7 1503 95 95 0 chr13 113074126 113074336 -6670562 - MER30 DNA MER1_type 0 230 1 208 333 88 42 chr13 113074520 113074712 -6670186 + MIR SINE MIR 2 202 -60 1675 181 14 10 chr13 113074775 113075067 -6669831 - AluJo SINE Alu -17 295 3 530 328 78 39 chr13 113075619 113076028 -6668870 - L3 LINE CR1 -22 1555 1131 1641 170 18 3 chr13 113077271 113077553 -6667345 + AluSx SINE Alu 1 286 -26 395 202 106 0 chr13 113077577 113077681 -6667217 + MIR SINE MIR 81 195 -67 2202 99 0 38 chr13 113078486 113078800 -6666098 + AluSx SINE Alu 4 305 -7 495 251 25 25 chr13 113079281 113079444 -6665454 + MER5B DNA MER1_type 3 165 -13 1973 100 4 7 chr13 113080360 113080631 -6664267 + AluSc SINE Alu 1 270 -39 22 80 0 0 chr13 113081628 113081678 -6663220 + AT_rich Low_complexity Low_complexity 1 50 0 47 19 0 0 chr13 113081875 113081929 -6662969 + AT_rich Low_complexity Low_complexity 1 54 0 606 89 0 0 chr13 113085154 113085244 -6659654 + (CTG)n Simple_repeat Simple_repeat 2 91 0 477 109 22 11 chr13 113085569 113085661 -6659237 + CT-rich Low_complexity Low_complexity 2 94 0 198 0 0 0 chr13 113085758 113085780 -6659118 + (GA)n Simple_repeat Simple_repeat 1 22 0 460 152 20 0 chr13 113085977 113086076 -6658822 + CT-rich Low_complexity Low_complexity 1 101 0 286 82 0 49 chr13 113086160 113086221 -6658677 + (CCG)n Simple_repeat Simple_repeat 1 58 0 57 16 0 0 chr13 113086448 113086512 -6658386 + GC_rich Low_complexity Low_complexity 1 64 0 1637 176 0 35 chr13 113090267 113090557 -6654341 - AluJo SINE Alu -26 286 7 192 177 89 76 chr13 113090918 113090997 -6653901 + MER5A DNA MER1_type 74 153 -36 974 196 0 23 chr13 113092285 113092499 -6652399 + AluSq SINE Alu 5 213 -100 3112 134 47 0 chr13 113093113 113093577 -6651321 - MER1A DNA MER1_type 0 529 44 185 142 88 0 chr13 113093802 113093915 -6650983 + (TA)n Simple_repeat Simple_repeat 2 124 0 2416 81 7 0 chr13 113093937 113094244 -6650654 - L1PA8 LINE L1 -8 6164 5856 2074 112 10 7 chr13 113094306 113094602 -6650296 + AluSg SINE Alu 1 297 -13 206 241 0 17 chr13 113095302 113095360 -6649538 + CT-rich Low_complexity Low_complexity 4 60 0 219 310 35 35 chr13 113095657 113095770 -6649128 + L2 LINE L2 3199 3311 -2 7944 39 1 0 chr13 113097047 113098288 -6646610 + L1PA4 LINE L1 4913 6154 -1 21 36 0 0 chr13 113098289 113098317 -6646581 + AT_rich Low_complexity Low_complexity 1 28 0 8164 142 29 19 chr13 113098458 113100073 -6644825 - MER61-int LTR ERV1 -355 5908 2852 603 206 0 0 chr13 113100213 113100339 -6644559 + L1MA4A LINE L1 6177 6302 -1 930 304 26 33 chr13 113100339 113100914 -6643984 + L1M4c LINE L1 1323 1893 -4491 311 242 30 20 chr13 113100887 113100986 -6643912 - L1MC1 LINE L1 -8 6325 6226 * 2109 152 33 9 chr13 113100989 113101324 -6643574 + MER61A LTR ERV1 1 343 0 291 269 54 21 chr13 113101324 113101417 -6643481 + MER61A-int LTR ERV1 1 96 -5121 590 200 22 15 chr13 113101417 113101552 -6643346 - AluSp/q SINE Alu -13 300 165 434 90 60 0 chr13 113101671 113101738 -6643160 + L1P LINE L1 3993 4063 -2083 1354 193 4 8 chr13 113101738 113101981 -6642917 - MSTA LTR MaLR 0 428 187 2345 121 30 40 chr13 113102002 113102400 -6642498 - L1PA11 LINE L1 -2 6172 5779 26 30 0 0 chr13 113102560 113102593 -6642305 + AT_rich Low_complexity Low_complexity 1 33 0 388 282 36 28 chr13 113102630 113102839 -6642059 - L1PA11 LINE L1 -506 5625 5426 2094 101 0 11 chr13 113103591 113103922 -6640976 - AluSx SINE Alu 0 328 1 859 153 0 0 chr13 113104689 113104833 -6640065 + L1MA4A LINE L1 6160 6303 0 210 220 51 68 chr13 113105267 113105326 -6639572 + MIR SINE MIR 36 93 -115 186 118 0 0 chr13 113105370 113105404 -6639494 + (CAT)n Simple_repeat Simple_repeat 2 35 0 1796 248 12 2 chr13 113107123 113107522 -6637376 - L1 LINE L1 -1891 4255 3853 1390 114 9 36 chr13 113107522 113107742 -6637156 - AluSg/x SINE Alu -12 300 87 707 244 0 0 chr13 113107743 113107907 -6636991 - L1 LINE L1 -2286 3860 3697 288 0 0 0 chr13 113107910 113107942 -6636956 + (TG)n Simple_repeat Simple_repeat 2 33 0 345 305 8 16 chr13 113108078 113108206 -6636692 + C-rich Low_complexity Low_complexity 4 130 0 272 223 0 0 chr13 113108255 113108349 -6636549 + C-rich Low_complexity Low_complexity 1 94 0 356 394 78 7 chr13 113108804 113109088 -6635810 + L2 LINE L2 2874 3177 -95 259 86 0 52 chr13 113109861 113109919 -6634979 + (CCG)n Simple_repeat Simple_repeat 1 55 0 57 16 0 0 chr13 113110146 113110210 -6634688 + GC_rich Low_complexity Low_complexity 1 64 0 1637 176 0 35 chr13 113113965 113114255 -6630643 - AluJo SINE Alu -26 286 7 309 273 124 8 chr13 113114565 113114686 -6630212 - MER5A DNA MER1_type 0 189 55 185 188 88 88 chr13 113114616 113114696 -6630202 + MER5A DNA MER1_type 74 153 -36 * 2076 126 0 13 chr13 113115983 113116285 -6628613 + AluSx SINE Alu 5 302 -10 25 0 0 0 chr13 113117292 113117317 -6627581 + AT_rich Low_complexity Low_complexity 1 25 0 32 0 0 0 chr13 113117360 113117392 -6627506 + AT_rich Low_complexity Low_complexity 1 32 0 2373 286 69 17 chr13 113117437 113118279 -6626619 + L1PA15 LINE L1 1 886 -5901 * 14312 221 45 16 chr13 113118276 113119695 -6625203 + L1PA15 LINE L1 1323 2699 -4117 1584 173 67 14 chr13 113119695 113119978 -6624920 + AluJo SINE Alu 1 298 -14 14312 221 45 16 chr13 113119978 113121266 -6623632 + L1PA15 LINE L1 2699 3948 -2868 186 43 0 0 chr13 113121266 113121289 -6623609 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 14312 221 45 16 chr13 113121289 113123907 -6620991 + L1PA15 LINE L1 3948 6816 0 530 294 55 75 chr13 113125012 113125414 -6619484 - MLT1K LTR MaLR -1 587 194 265 408 0 13 chr13 113125906 113126063 -6618835 - MLT1K LTR MaLR -337 251 97 317 102 0 0 chr13 113127463 113127512 -6617386 + MADE1 DNA Mariner 1 49 -31 714 320 99 13 chr13 113128699 113129072 -6615826 + LTR16A LTR ERVL 51 457 0 297 291 178 17 chr13 113129074 113129315 -6615583 + HERV16 LTR ERVL 3 282 -4714 2013 112 154 44 chr13 113129436 113129485 -6615413 - MSTA LTR MaLR -2 426 384 2394 84 0 0 chr13 113129485 113129781 -6615117 - AluY SINE Alu -11 300 5 2013 112 154 44 chr13 113129781 113130115 -6614783 - MSTA LTR MaLR -44 384 1 8101 170 67 10 chr13 113130115 113131675 -6613223 - MSTA-int LTR MaLR 0 1651 2 2099 139 132 8 chr13 113131676 113132056 -6612842 - MSTA LTR MaLR 0 428 2 767 313 54 8 chr13 113132474 113132864 -6612034 + HERV16 LTR ERVL 916 1323 -3673 573 211 0 0 chr13 113133565 113133693 -6611205 - L1MB3 LINE L1 -2 6181 6054 1801 153 53 20 chr13 113133738 113134038 -6610860 - AluJb SINE Alu -2 310 1 2396 21 0 0 chr13 113134219 113134498 -6610400 + L1PA2 LINE L1 5877 6155 0 213 39 0 0 chr13 113134574 113134600 -6610298 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 9864 80 2 6 chr13 113134650 113136007 -6608891 - HERV9 LTR ERV1 -3541 4858 3507 26020 33 0 0 chr13 113136108 113139402 -6605496 - L1P LINE L1 -1098 5048 1755 7778 16 0 1 chr13 113139502 113140616 -6604282 + L1PA2 LINE L1 5061 6155 0 189 0 0 0 chr13 113140625 113140646 -6604252 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 497 271 98 30 chr13 113140734 113141133 -6603765 + L1MEc LINE L1 1921 2346 -4050 234 157 100 0 chr13 113141236 113141306 -6603592 - L1M4 LINE L1 -917 5229 5153 752 65 2 0 chr13 113141959 113142101 -6602797 + L1PA8 LINE L1 6043 6186 0 5655 106 33 1 chr13 113143461 113144373 -6600525 + L1PA15 LINE L1 5216 6155 -10 2066 114 7 0 chr13 113144674 113144990 -6599908 + AluSx SINE Alu 1 318 0 840 55 0 0 chr13 113146132 113146276 -6598622 + L1PA4 LINE L1 6023 6166 0 773 268 110 54 chr13 113146641 113147110 -6597788 - L1MDb LINE L1 -2222 4184 3742 2178 115 7 0 chr13 113147110 113147415 -6597483 - AluSq SINE Alu -6 307 1 773 268 110 54 chr13 113147415 113147453 -6597445 - L1MDb LINE L1 -2664 3742 3708 2390 67 0 0 chr13 113147453 113147751 -6597147 - AluY SINE Alu -13 298 1 773 268 110 54 chr13 113147751 113148126 -6596772 - L1MDb LINE L1 -2698 3708 3252 1733 140 67 25 chr13 113148149 113148507 -6596391 - THE1C LTR MaLR -2 373 1 256 248 50 0 chr13 113148524 113148625 -6596273 - L1MDb LINE L1 -3203 3203 3098 675 356 63 22 chr13 113148657 113149115 -6595783 - L1MDb LINE L1 -4987 1422 946 733 172 0 0 chr13 113149630 113149752 -6595146 + AluJb SINE Alu 3 124 -188 251 252 244 0 chr13 113149920 113150035 -6594863 + MIR SINE MIR 2 144 -118 1759 184 68 32 chr13 113150037 113150478 -6594420 - LTR2B LTR ERV1 0 490 34 258 326 22 0 chr13 113150499 113150591 -6594307 + MIR SINE MIR 144 237 -25 2315 91 0 10 chr13 113151896 113152194 -6592704 + AluSg SINE Alu 1 295 -15 2039 128 0 0 chr13 113152856 113153182 -6591716 + AluSq SINE Alu 2 327 0 2009 148 130 5 chr13 113153396 113153774 -6591124 - MSTB LTR MaLR 0 426 2 1808 139 0 0 chr13 113154761 113155041 -6589857 + THE1B LTR MaLR 85 364 0 1512 207 14 14 chr13 113155048 113155405 -6589493 - MLT1A1 LTR MaLR -8 357 1 804 224 88 41 chr13 113155862 113156205 -6588693 - L1ME2 LINE L1 -45 6513 6155 627 254 129 17 chr13 113156270 113156734 -6588164 - L1ME2 LINE L1 -1320 5220 4705 208 213 64 0 chr13 113156747 113156841 -6588057 + (TA)n Simple_repeat Simple_repeat 2 101 0 244 31 0 0 chr13 113156874 113156906 -6587992 + THE1B LTR MaLR 85 116 -248 469 259 143 11 chr13 113157064 113157350 -6587548 - L1ME2 LINE L1 -1818 4722 4399 883 269 85 32 chr13 113157355 113157790 -6587108 - MLT1C LTR MaLR -2 465 8 619 266 83 33 chr13 113157796 113158157 -6586741 - L1ME2 LINE L1 -2139 4401 4023 2153 123 0 0 chr13 113158160 113158452 -6586446 + AluSx SINE Alu 1 292 -20 459 309 65 0 chr13 113158452 113158698 -6586200 - L1ME2 LINE L1 -2605 3935 3674 563 295 143 0 chr13 113158759 113158976 -6585922 - MIR SINE MIR 0 262 15 221 259 59 24 chr13 113158987 113159072 -6585826 - MIR SINE MIR -54 208 121 816 290 55 45 chr13 113159997 113160639 -6584259 - L1ME3A LINE L1 -225 5945 5298 359 310 120 20 chr13 113160753 113160953 -6583945 - L1ME3A LINE L1 -1025 5121 4902 21 0 0 0 chr13 113161358 113161379 -6583519 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 113161555 113161579 -6583319 + AT_rich Low_complexity Low_complexity 1 24 0 1693 223 77 9 chr13 113161634 113162191 -6582707 + MER114 LTR ERV 54 648 0 2338 202 13 36 chr13 113162658 113163183 -6581715 + MLT2B2 LTR ERVL 1 513 -2 5870 76 68 6 chr13 113163630 113164408 -6580490 + LTR12 LTR ERV1 1 826 0 33959 88 4 6 chr13 113164432 113169242 -6575656 + HERV9 LTR ERV1 58 4858 -3541 186 43 0 0 chr13 113169292 113169315 -6575583 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1015 53 0 0 chr13 113169385 113169517 -6575381 - L1PA4 LINE L1 -1 6154 6023 2065 114 7 0 chr13 113170661 113170977 -6573921 - AluSx SINE Alu 0 318 1 927 73 0 0 chr13 113171278 113171402 -6573496 - L1PA15 LINE L1 -10 6155 6032 8150 60 111 6 chr13 113171502 113172690 -6572208 - L1P LINE L1 -4833 1313 1 241 269 37 0 chr13 113172711 113172819 -6572079 - L1ME2 LINE L1 -4515 2025 1914 1717 260 84 19 chr13 113172845 113173686 -6571212 - L1ME2 LINE L1 -21 6212 5427 737 252 0 0 chr13 113173686 113173845 -6571053 - FRAM SINE Alu -7 159 1 1717 260 84 19 chr13 113173845 113174749 -6570149 - L1ME2 LINE L1 -806 5427 4295 320 303 70 54 chr13 113174784 113174969 -6569929 - MIR SINE MIR -73 189 2 730 270 70 10 chr13 113174998 113175198 -6569700 + MER82 DNA MER2_type 442 653 0 229 296 181 77 chr13 113175231 113175518 -6569380 - L2 LINE L2 -1139 2175 1859 822 248 123 69 chr13 113175532 113175964 -6568934 - MLT1G LTR MaLR 0 590 136 602 343 19 5 chr13 113176013 113176229 -6568669 - L2 LINE L2 -1730 1584 1366 710 163 7 0 chr13 113177444 113177585 -6567313 + GA-rich Low_complexity Low_complexity 3 144 0 1509 208 113 28 chr13 113178349 113178749 -6566149 + MER63B DNA MER1_type 1 434 -2 312 52 69 0 chr13 113180027 113180085 -6564813 + GA-rich Low_complexity Low_complexity 2 63 0 24529 34 5 0 chr13 113180707 113184500 -6560398 - L1PA3 LINE L1 -5 6150 2344 3406 25 0 0 chr13 113184606 113185012 -6559886 - L1P LINE L1 -956 5190 4785 318 258 125 83 chr13 113185138 113185402 -6559496 - L1ME2 LINE L1 -2887 3328 3054 342 352 11 11 chr13 113186502 113186681 -6558217 - L1ME2 LINE L1 -3627 2588 2410 26 82 0 0 chr13 113186861 113186922 -6557976 + AT_rich Low_complexity Low_complexity 1 61 0 200 139 28 0 chr13 113188138 113188174 -6556724 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 21 57 0 0 chr13 113188492 113188527 -6556371 + AT_rich Low_complexity Low_complexity 1 35 0 643 336 45 43 chr13 113188682 113189307 -6555591 - L1ME2 LINE L1 -5736 660 35 626 312 74 51 chr13 113189366 113189837 -6555061 + L1MA1 LINE L1 13 494 -6355 320 373 105 54 chr13 113189892 113190168 -6554730 + L1MA1 LINE L1 667 956 -5893 349 355 57 82 chr13 113190436 113190802 -6554096 + L1MA1 LINE L1 757 1113 -5736 243 186 0 0 chr13 113190897 113190940 -6553958 + L1PA15-16 LINE L1 1521 1563 -5286 * 9142 240 25 25 chr13 113190926 113194774 -6550124 + L1MA1 LINE L1 1335 5184 -1664 234 0 0 0 chr13 113194774 113194800 -6550098 + (TA)n Simple_repeat Simple_repeat 2 27 0 1985 97 13 49 chr13 113194803 113195111 -6549787 - AluSg SINE Alu -13 297 1 9142 240 25 25 chr13 113195111 113195193 -6549705 + L1MA1 LINE L1 5186 5348 -1500 * 14890 165 23 14 chr13 113195183 113199659 -6545239 + L1MA9 LINE L1 2656 7162 -562 3984 81 289 0 chr13 113199659 113200300 -6544598 - LTR12 LTR ERV1 0 826 1 14890 165 23 14 chr13 113200300 113200344 -6544554 + L1MA9 LINE L1 7162 7204 -520 6685 131 25 2 chr13 113200343 113201827 -6543071 + L1MA1 LINE L1 5486 7004 0 * 300 176 24 35 chr13 113202268 113202353 -6542545 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 1852 162 0 0 chr13 113202470 113202766 -6542132 + AluSx SINE Alu 1 296 -16 35 24 0 0 chr13 113202766 113202808 -6542090 + AT_rich Low_complexity Low_complexity 1 42 0 231 146 0 0 chr13 113202969 113203010 -6541888 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2068 196 46 31 chr13 113203993 113204472 -6540426 + MER66B LTR ERV1 1 486 0 1200 175 60 0 chr13 113205961 113206067 -6538831 + L1MA9 LINE L1 7465 7563 -168 234 0 0 0 chr13 113206067 113206093 -6538805 + (CA)n Simple_repeat Simple_repeat 1 26 0 1200 175 60 0 chr13 113206093 113206238 -6538660 + L1MA9 LINE L1 7563 7731 0 561 101 242 0 chr13 113206436 113206535 -6538363 + L1MA1 LINE L1 6180 6302 0 200 273 0 0 chr13 113207547 113207591 -6537307 + (TG)n Simple_repeat Simple_repeat 1 44 0 297 75 0 0 chr13 113208639 113208679 -6536219 + (CA)n Simple_repeat Simple_repeat 1 40 0 256 180 0 43 chr13 113208682 113208751 -6536147 + L1MC4 LINE L1 2006 6986 -1336 216 214 0 0 chr13 113208763 113208805 -6536093 + (TA)n Simple_repeat Simple_repeat 2 43 0 340 318 17 17 chr13 113209360 113209536 -6535362 + L1ME3A LINE L1 5808 5983 -187 232 229 0 100 chr13 113210246 113210316 -6534582 - L2 LINE L2 0 3313 3251 30 27 0 0 chr13 113211753 113211790 -6533108 + AT_rich Low_complexity Low_complexity 1 37 0 591 288 101 31 chr13 113212437 113212725 -6532173 + MLT1K LTR MaLR 281 588 0 1442 233 37 27 chr13 113213097 113213501 -6531397 - MLT1C LTR MaLR -51 406 11 820 220 66 26 chr13 113213560 113213864 -6531034 + L1MB5 LINE L1 2034 2349 -4035 3189 258 33 9 chr13 113213869 113214960 -6529938 + L1MB5 LINE L1 2387 3503 -2879 3296 219 33 23 chr13 113215030 113216325 -6528573 + L1MB5 LINE L1 5101 6410 0 227 145 171 92 chr13 113218858 113218934 -6525964 + MSTB LTR MaLR 1 82 -344 2445 77 57 0 chr13 113218948 113219284 -6525614 + THE1A LTR MaLR 1 355 0 21 36 0 0 chr13 113220805 113220833 -6524065 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr13 113223589 113223634 -6521264 + AT_rich Low_complexity Low_complexity 1 45 0 23 68 0 0 chr13 113223989 113224033 -6520865 + AT_rich Low_complexity Low_complexity 1 44 0 1522 239 71 11 chr13 113224044 113224483 -6520415 + MLT1C LTR MaLR 3 467 0 333 47 0 0 chr13 113225584 113225627 -6519271 + (TG)n Simple_repeat Simple_repeat 2 44 0 918 194 17 6 chr13 113226425 113226600 -6518298 - MER45A DNA AcHobo -1 177 1 750 198 6 43 chr13 113226855 113227017 -6517881 + AluJb SINE Alu 133 288 -24 35 54 0 0 chr13 113227017 113227073 -6517825 + AT_rich Low_complexity Low_complexity 1 56 0 2397 265 33 7 chr13 113227418 113228115 -6516783 - L1MB7 LINE L1 -9 6175 5461 310 176 54 40 chr13 113228135 113228209 -6516689 - L1MA4A LINE L1 -23 6280 6206 * 3254 230 54 12 chr13 113228206 113229299 -6515599 - L1MB7 LINE L1 -692 5470 4337 2943 183 18 28 chr13 113229322 113229930 -6514968 + MER7C DNA MER2_type 1 602 0 334 245 139 40 chr13 113230186 113230351 -6514547 + MIR SINE MIR 8 178 -30 259 325 41 24 chr13 113231411 113231534 -6513364 + MIR3 SINE MIR 58 182 -26 182 326 0 0 chr13 113232827 113232873 -6512025 + MIR3 SINE MIR 160 205 -3 677 263 5 48 chr13 113232892 113233078 -6511820 + MER45A DNA AcHobo 1 178 0 31 26 0 0 chr13 113233823 113233861 -6511037 + AT_rich Low_complexity Low_complexity 1 38 0 16823 177 22 3 chr13 113233863 113238025 -6506873 - L1PA14 LINE L1 -2 6159 1925 26 30 0 0 chr13 113238099 113238132 -6506766 + AT_rich Low_complexity Low_complexity 1 33 0 436 310 119 46 chr13 113238146 113238278 -6506620 + L1MC/D LINE L1 3699 3820 -2326 1442 182 114 15 chr13 113238278 113238619 -6506279 - THE1C LTR MaLR 0 375 1 436 310 119 46 chr13 113238619 113238989 -6505909 + L1MC/D LINE L1 3820 4238 -1908 2309 74 3 0 chr13 113239196 113239518 -6505380 - AluY SINE Alu 0 323 1 315 291 37 37 chr13 113239556 113239745 -6505153 + L1MC/D LINE L1 5256 5444 -2364 207 178 69 30 chr13 113240606 113240707 -6504191 + (TATATG)n Simple_repeat Simple_repeat 4 108 0 417 255 0 10 chr13 113240990 113241092 -6503806 - L1MEc LINE L1 -6261 135 35 1210 305 96 30 chr13 113241256 113241551 -6503347 + HERVL LTR ERVL 1763 2037 -3727 2208 118 30 24 chr13 113241551 113241924 -6502974 - THE1C LTR MaLR 0 375 1 1210 305 96 30 chr13 113241924 113242434 -6502464 + HERVL LTR ERVL 2037 2621 -3143 752 353 36 43 chr13 113242461 113242668 -6502230 + HERVL LTR ERVL 2739 2946 -2818 1920 191 5 22 chr13 113242668 113243039 -6501859 - MLT1A1 LTR MaLR 0 365 1 752 353 36 43 chr13 113243039 113243387 -6501511 + HERVL LTR ERVL 2946 3290 -2474 691 287 75 46 chr13 113243728 113244010 -6500888 + HERVL LTR ERVL 3683 3972 -1513 1087 290 25 34 chr13 113244079 113244486 -6500412 + HERVL LTR ERVL 4111 4513 -1251 11062 174 88 105 chr13 113244527 113247929 -6496969 - L1 LINE L1 -1992 5573 2113 1643 190 7 0 chr13 113247929 113248228 -6496670 - AluJb SINE Alu 0 306 6 11062 174 88 105 chr13 113248228 113248401 -6496497 - L1 LINE L1 -5452 2113 1939 2342 129 34 0 chr13 113248401 113248751 -6496147 + THE1B LTR MaLR 1 362 -2 11213 100 11 18 chr13 113248753 113248803 -6496095 + THE1B-int LTR MaLR 1 50 -1530 2363 75 0 16 chr13 113248803 113249109 -6495789 + AluY SINE Alu 1 301 -10 11213 100 11 18 chr13 113249109 113249917 -6494981 + THE1B-int LTR MaLR 50 845 -735 1940 144 7 3 chr13 113249917 113250208 -6494690 + AluSg SINE Alu 1 292 -18 11213 100 11 18 chr13 113250208 113250939 -6493959 + THE1B-int LTR MaLR 845 1580 0 2196 142 31 17 chr13 113250939 113251298 -6493600 + THE1B LTR MaLR 1 364 0 11062 174 88 105 chr13 113251298 113253027 -6491871 - L1 LINE L1 -5625 1940 12 423 289 93 64 chr13 113254874 113255389 -6489509 - L1ME3A LINE L1 -344 5809 5280 1997 116 10 10 chr13 113255407 113255699 -6489199 - AluY SINE Alu -19 292 1 4152 199 13 41 chr13 113255795 113256445 -6488453 - L1MD1 LINE L1 0 6636 5969 2165 118 7 0 chr13 113256445 113256741 -6488157 - AluSx SINE Alu -12 300 3 4152 199 13 41 chr13 113256741 113256919 -6487979 - L1MD1 LINE L1 -667 5969 5840 2224 119 0 0 chr13 113256919 113257213 -6487685 - AluSx SINE Alu -16 296 3 4152 199 13 41 chr13 113257213 113257440 -6487458 - L1MD1 LINE L1 -796 5840 5608 2149 223 56 53 chr13 113257463 113258299 -6486599 - L1MD1 LINE L1 -4045 2495 1657 469 276 138 35 chr13 113258335 113258683 -6486215 - L1MD1 LINE L1 -5708 313 118 506 273 47 36 chr13 113258760 113259013 -6485885 - L1ME3A LINE L1 -1979 4150 3895 316 303 97 27 chr13 113259054 113259611 -6485287 - L1ME3A LINE L1 -2305 3824 3229 2060 117 0 11 chr13 113259638 113259921 -6484977 - AluSx SINE Alu -32 280 1 495 267 32 46 chr13 113260012 113260143 -6484755 - L1ME3A LINE L1 -2886 3243 3115 1912 127 0 8 chr13 113260143 113260410 -6484488 - AluSq SINE Alu -28 285 21 495 267 32 46 chr13 113260410 113260495 -6484403 - L1ME3A LINE L1 -3014 3115 3030 2246 122 30 25 chr13 113260722 113261084 -6483814 + THE1B LTR MaLR 1 364 0 369 303 94 43 chr13 113261323 113261655 -6483243 - L1MEc LINE L1 -4433 1696 1360 1366 236 76 35 chr13 113261687 113262088 -6482810 + MLT1D LTR MaLR 5 522 -104 440 217 76 8 chr13 113262156 113262312 -6482586 + MLT1D LTR MaLR 387 599 -26 304 286 89 86 chr13 113262358 113262627 -6482271 - L1MEc LINE L1 -4909 1210 941 498 102 37 9 chr13 113262669 113262777 -6482121 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 1504 180 55 4 chr13 113262802 113263057 -6481841 - AluJo SINE Alu -44 268 1 425 344 57 81 chr13 113263061 113263555 -6481343 - L1MEc LINE L1 -5215 904 423 529 243 9 63 chr13 113264124 113264346 -6480552 + L1MC5 LINE L1 7720 7929 -32 4509 63 21 6 chr13 113265678 113266697 -6478201 + MER11A LTR ERVK 1 1266 0 581 197 87 1 chr13 113267635 113267848 -6477050 + MER65A LTR ERV1 180 441 -4 835 233 80 45 chr13 113267982 113268295 -6476603 + MER33 DNA MER1_type 1 324 0 1304 173 18 0 chr13 113268487 113268707 -6476191 + L1PA15-16 LINE L1 2 225 -6624 * 1476 228 30 30 chr13 113268685 113269019 -6475879 + L1PA15-16 LINE L1 772 1105 -5744 * 5825 252 20 11 chr13 113269017 113270723 -6474175 + L1PA15-16 LINE L1 2912 4634 -2215 415 280 133 0 chr13 113270737 113270880 -6474018 - MER5A DNA MER1_type 0 189 28 293 288 32 117 chr13 113270966 113271275 -6473623 + MLT1H LTR MaLR 217 499 -50 27 29 0 0 chr13 113271319 113271353 -6473545 + AT_rich Low_complexity Low_complexity 1 34 0 278 246 14 0 chr13 113271553 113271622 -6473276 + (TA)n Simple_repeat Simple_repeat 1 70 0 228 261 23 62 chr13 113271707 113271837 -6473061 - L1ME LINE L1 -264 5857 5733 236 343 7 7 chr13 113272169 113272306 -6472592 - L1ME LINE L1 -682 5480 5344 5453 64 8 1 chr13 113272512 113273215 -6471683 - L1PA8 LINE L1 -13 6159 5452 27 49 0 0 chr13 113273226 113273267 -6471631 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 113273313 113273335 -6471563 + AT_rich Low_complexity Low_complexity 1 22 0 2212 121 0 0 chr13 113273723 113274036 -6470862 + AluSq SINE Alu 1 313 0 300 193 0 80 chr13 113274570 113274658 -6470240 - L1ME4a LINE L1 -5 6116 6036 507 256 44 0 chr13 113275073 113275210 -6469688 + MER69A DNA AcHobo 35 177 0 243 0 0 0 chr13 113276061 113276088 -6468810 + (TG)n Simple_repeat Simple_repeat 2 28 0 852 236 77 65 chr13 113276327 113276637 -6468261 - LTR68 LTR ERV1 -426 314 1 206 242 91 0 chr13 113276641 113276707 -6468191 + MIR SINE MIR 174 245 -17 891 166 6 0 chr13 113278639 113278796 -6466102 + L1MC3 LINE L1 7608 7765 -20 2020 107 87 35 chr13 113279056 113279402 -6465496 - THE1B LTR MaLR 0 364 1 2155 284 100 10 chr13 113280524 113281484 -6463414 + L1ME LINE L1 125 1170 -5226 3257 197 14 6 chr13 113281495 113282149 -6462749 - L1MB4 LINE L1 -34 6146 5488 358 225 78 0 chr13 113282164 113282293 -6462605 + L1ME LINE L1 4967 5105 -1110 1037 273 113 3 chr13 113282315 113282615 -6462283 + MLT1E2 LTR MaLR 294 626 0 744 214 45 25 chr13 113282616 113282817 -6462081 + L1ME LINE L1 5681 5885 -350 370 320 51 20 chr13 113283721 113283974 -6460924 - MER41B LTR ERV1 -200 435 175 745 230 73 73 chr13 113284395 113284695 -6460203 - LTR37B LTR ERV1 -54 414 115 216 0 0 0 chr13 113284735 113284759 -6460139 + (T)n Simple_repeat Simple_repeat 1 24 0 374 221 0 0 chr13 113285277 113285345 -6459553 + MER3 DNA MER1_type 7 74 -135 204 135 0 0 chr13 113285738 113285775 -6459123 + (TC)n Simple_repeat Simple_repeat 1 37 0 1777 197 0 0 chr13 113286036 113286335 -6458563 + AluJo SINE Alu 1 299 -13 300 111 67 11 chr13 113287074 113287164 -6457734 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 344 313 77 35 chr13 113287275 113287534 -6457364 - MERVL LTR ERVL -176 5309 5040 3001 180 76 23 chr13 113287796 113288439 -6456459 + LTR8A LTR ERV1 51 727 0 737 275 205 27 chr13 113288441 113288889 -6456009 + LTR50 LTR ERVL 26 553 -242 256 231 176 56 chr13 113288895 113289111 -6455787 + LTR33A LTR ERVL 236 477 -46 5598 96 18 14 chr13 113289536 113290373 -6454525 - L1PA11 LINE L1 0 6174 5335 1474 131 117 47 chr13 113290521 113290878 -6454020 + MER4A LTR ERV1 1 229 -236 531 136 232 16 chr13 113290913 113291038 -6453860 + MER4C LTR ERV1 296 447 -18 3386 51 7 14 chr13 113291137 113291636 -6453262 + MER11A LTR ERVK 1 592 -674 2475 61 20 12 chr13 113291633 113291978 -6452920 + MER11A LTR ERVK 919 1266 0 * 1972 169 45 38 chr13 113292112 113292539 -6452359 - MSTB1 LTR MaLR -2 430 1 24 32 0 0 chr13 113295878 113295909 -6448989 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 113297121 113297147 -6447751 + AT_rich Low_complexity Low_complexity 1 26 0 1502 220 60 44 chr13 113297335 113297771 -6447127 - MLT1C LTR MaLR 0 467 25 25 0 0 0 chr13 113297837 113297862 -6447036 + AT_rich Low_complexity Low_complexity 1 25 0 1441 218 92 3 chr13 113298014 113298426 -6446472 + MLT2B1 LTR ERVL 1 495 -20 202 197 28 14 chr13 113298449 113298520 -6446378 + (TA)n Simple_repeat Simple_repeat 1 72 0 248 236 28 28 chr13 113298524 113298596 -6446302 + L1MEd LINE L1 1186 1257 -4862 1972 299 135 18 chr13 113301044 113302005 -6442893 - L2 LINE L2 -524 2790 1717 452 284 163 9 chr13 113302019 113302234 -6442664 - L2 LINE L2 -1754 1560 1313 1012 311 28 36 chr13 113302435 113302827 -6442071 - MLT1G1 LTR MaLR -204 391 3 1088 325 170 16 chr13 113302829 113303469 -6441429 - L2 LINE L2 -1995 1319 581 398 259 111 30 chr13 113303459 113303594 -6441304 - MIR SINE MIR -100 162 17 * 226 229 0 0 chr13 113303690 113303738 -6441160 - L2 LINE L2 -2488 826 779 1817 210 59 8 chr13 113303967 113304357 -6440541 - MSTB1 LTR MaLR -7 425 16 349 248 161 22 chr13 113305583 113305720 -6439178 + MIR SINE MIR 89 244 -18 2036 128 0 0 chr13 113306885 113307215 -6437683 + AluSx SINE Alu 1 330 0 694 233 57 90 chr13 113307249 113307850 -6437048 + L1M4 LINE L1 4753 5333 -813 422 250 90 8 chr13 113307836 113307958 -6436940 + L1ME2 LINE L1 6028 6162 -4 * 27 73 0 0 chr13 113308697 113308752 -6436146 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr13 113308774 113308798 -6436100 + AT_rich Low_complexity Low_complexity 1 24 0 13356 170 25 27 chr13 113308888 113311321 -6433577 + L1MA3 LINE L1 289 2718 -4847 3594 116 17 43 chr13 113311315 113311777 -6433121 + L1MA3 LINE L1 2985 3424 -4141 * 1780 159 61 9 chr13 113311777 113312103 -6432795 - MER61A LTR ERV1 0 343 1 3594 116 17 43 chr13 113312103 113312337 -6432561 + L1MA3 LINE L1 3424 3663 -3902 * 6195 145 35 11 chr13 113312329 113313808 -6431090 + L1MA3 LINE L1 6204 7723 -1 24 32 0 0 chr13 113314702 113314733 -6430165 + AT_rich Low_complexity Low_complexity 1 31 0 218 160 20 0 chr13 113315132 113315182 -6429716 + GA-rich Low_complexity Low_complexity 2 52 0 324 263 70 0 chr13 113315491 113315605 -6429293 - MIR SINE MIR -57 205 84 24 0 0 0 chr13 113316180 113316204 -6428694 + AT_rich Low_complexity Low_complexity 1 24 0 1546 96 10 122 chr13 113316339 113316521 -6428377 + MER4E LTR ERV1 1 135 -644 1883 175 0 0 chr13 113316521 113316824 -6428074 + AluSx SINE Alu 1 303 -9 1546 96 10 122 chr13 113316824 113316965 -6427933 + MER4E LTR ERV1 135 294 -485 1712 195 55 24 chr13 113316965 113317432 -6427466 - LTR22 LTR ERVK 0 458 1 * 3013 116 21 61 chr13 113317432 113317942 -6426956 + MER4E LTR ERV1 290 779 0 306 0 0 0 chr13 113318048 113318082 -6426816 + (TG)n Simple_repeat Simple_repeat 2 35 0 2034 174 107 63 chr13 113318302 113318826 -6426072 - LTR10B LTR ERV1 0 547 1 273 271 82 16 chr13 113319072 113319194 -6425704 - LTR16A1 LTR ERVL -67 390 261 241 167 0 0 chr13 113319334 113319376 -6425522 + L2 LINE L2 3265 3306 -7 212 375 162 6 chr13 113319590 113319929 -6424969 - L2 LINE L2 0 3272 2881 193 277 21 0 chr13 113320157 113320204 -6424694 - L3 LINE CR1 -1080 497 450 891 140 27 43 chr13 113321138 113321324 -6423574 + L1M4 LINE L1 5344 5526 -652 1953 197 81 68 chr13 113321375 113321918 -6422980 - MLT2B3 LTR ERVL 0 554 5 189 0 0 0 chr13 113322134 113322155 -6422743 + (TG)n Simple_repeat Simple_repeat 1 21 0 242 193 18 18 chr13 113322564 113322621 -6422277 + L3 LINE CR1 1334 1390 -187 1925 208 41 91 chr13 113322669 113323205 -6421693 - MLT2B3 LTR ERVL 0 554 48 2766 102 5 3 chr13 113323205 113323579 -6421319 - THE1C LTR MaLR 0 375 1 1925 208 41 91 chr13 113323579 113323625 -6421273 - MLT2B3 LTR ERVL -506 48 1 499 253 30 55 chr13 113324503 113324791 -6420107 + L1MCc LINE L1 30 656 -5766 232 279 47 53 chr13 113325027 113325217 -6419681 + L1MCc LINE L1 942 1130 -5292 2074 265 68 26 chr13 113325318 113325490 -6419408 + L1MCc LINE L1 1153 1316 -5806 225 65 0 0 chr13 113325490 113325521 -6419377 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2074 265 68 26 chr13 113325521 113326072 -6418826 + L1MCc LINE L1 1316 1843 -5279 192 77 0 0 chr13 113326072 113326098 -6418800 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2074 265 68 26 chr13 113326098 113326668 -6418230 + L1MCc LINE L1 1843 2695 -4427 428 228 0 0 chr13 113326772 113326851 -6418047 - Tigger5 DNA MER2_type -2244 79 1 274 306 31 0 chr13 113326851 113326949 -6417949 + L1MCc LINE L1 2695 2795 -4327 1152 297 53 37 chr13 113327326 113327781 -6417117 + LTR16B LTR ERVL 3 464 0 1967 114 4 11 chr13 113328527 113328808 -6416090 - AluSg SINE Alu -31 279 1 224 205 0 0 chr13 113329570 113329609 -6415289 + (CAT)n Simple_repeat Simple_repeat 3 41 0 367 267 203 0 chr13 113329800 113329987 -6414911 + L1MC4 LINE L1 7807 8031 -11 327 325 46 7 chr13 113330319 113330470 -6414428 - MIR SINE MIR -22 240 84 262 338 0 0 chr13 113330557 113330637 -6414261 + L3 LINE CR1 1150 1229 -348 180 0 0 0 chr13 113330773 113330793 -6414105 + (T)n Simple_repeat Simple_repeat 1 20 0 1903 255 33 29 chr13 113330793 113331482 -6413416 + L1MC3 LINE L1 6459 7150 -635 240 35 0 0 chr13 113331518 113331547 -6413351 + (A)n Simple_repeat Simple_repeat 1 29 0 228 149 0 0 chr13 113331554 113331601 -6413297 + (CAAG)n Simple_repeat Simple_repeat 2 48 0 334 270 25 25 chr13 113332675 113332834 -6412064 - L1M4c LINE L1 -4173 2211 2053 627 120 0 9 chr13 113332838 113332946 -6411952 + L1MA8 LINE L1 6181 6287 -4 1662 175 174 21 chr13 113333170 113333604 -6411294 + LTR10A LTR ERV1 1 548 -61 1810 187 19 14 chr13 113333795 113334236 -6410662 + MER61D LTR ERV1 1 501 0 231 114 0 0 chr13 113334544 113334579 -6410319 + (A)n Simple_repeat Simple_repeat 1 35 0 382 284 41 41 chr13 113335600 113335794 -6409104 - MLT1K LTR MaLR -206 382 189 1013 228 155 59 chr13 113338450 113338876 -6406022 + MLT1C LTR MaLR 1 467 0 388 282 92 51 chr13 113339188 113339383 -6405515 + L1MCa LINE L1 1713 1915 -4511 23 54 0 0 chr13 113340856 113340893 -6404005 + AT_rich Low_complexity Low_complexity 1 37 0 338 107 18 0 chr13 113341485 113341541 -6403357 + (CAGA)n Simple_repeat Simple_repeat 3 59 0 22 56 0 0 chr13 113341737 113341773 -6403125 + AT_rich Low_complexity Low_complexity 1 36 0 342 276 0 0 chr13 113342804 113342902 -6401996 + HsTC2 DNA Tc2 1799 1896 -2 1758 137 49 0 chr13 113344703 113344987 -6399911 - AluSx SINE Alu -14 298 1 3313 173 30 9 chr13 113346587 113347217 -6397681 + LTR48B LTR ERV1 1 643 -1 23 0 0 0 chr13 113347396 113347419 -6397479 + AT_rich Low_complexity Low_complexity 1 23 0 516 306 46 46 chr13 113348903 113349164 -6395734 + MIR SINE MIR 1 261 -1 187 267 30 50 chr13 113349253 113349354 -6395544 - MER5B DNA MER1_type -77 101 3 285 231 154 0 chr13 113349619 113349697 -6395201 + L1ME2 LINE L1 6015 6104 -60 255 240 0 0 chr13 113350597 113350647 -6394251 - L2 LINE L2 -6 3266 3217 390 357 76 8 chr13 113350946 113351209 -6393689 + HAL1 LINE L1 1403 1683 -824 391 299 95 19 chr13 113351230 113351441 -6393457 + LTR33A LTR ERVL 20 246 -277 25 0 0 0 chr13 113352612 113352637 -6392261 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr13 113353670 113353704 -6391194 + (CA)n Simple_repeat Simple_repeat 1 34 0 283 295 57 74 chr13 113353761 113353883 -6391015 + L2 LINE L2 3122 3241 -31 357 238 21 0 chr13 113353884 113354027 -6390871 + (TA)n Simple_repeat Simple_repeat 1 146 0 189 323 172 0 chr13 113354273 113354372 -6390526 + MIR SINE MIR 29 144 -64 5663 149 27 19 chr13 113354927 113356233 -6388665 + L1MA6 LINE L1 4969 6283 -17 234 128 0 0 chr13 113356233 113356272 -6388626 + L1MA5 LINE L1 6258 6296 -4 182 61 0 82 chr13 113356319 113356368 -6388530 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr13 113356606 113356628 -6388270 + AT_rich Low_complexity Low_complexity 1 22 0 258 220 0 0 chr13 113356716 113356775 -6388123 + GA-rich Low_complexity Low_complexity 3 61 0 210 143 0 0 chr13 113357049 113357084 -6387814 + (CA)n Simple_repeat Simple_repeat 2 36 0 417 322 53 44 chr13 113357243 113357432 -6387466 - L1ME1 LINE L1 -284 5882 5696 2211 93 7 0 chr13 113357432 113357721 -6387177 - AluSx SINE Alu -10 302 12 417 322 53 44 chr13 113357721 113358029 -6386869 - L1ME1 LINE L1 -470 5696 5381 289 263 179 11 chr13 113359029 113359124 -6385774 + MIR3 SINE MIR 76 186 -22 24 0 0 0 chr13 113359314 113359338 -6385560 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 113359561 113359584 -6385314 + AT_rich Low_complexity Low_complexity 1 23 0 2085 99 11 0 chr13 113360972 113361282 -6383616 - AluSx SINE Alu 0 318 6 219 312 39 0 chr13 113361436 113361513 -6383385 - MIR3 SINE MIR 0 208 129 242 326 102 41 chr13 113361524 113361720 -6383178 + MIR SINE MIR 3 210 -52 284 309 12 0 chr13 113362970 113363051 -6381847 - L2 LINE L2 -1 3271 3190 1954 129 49 38 chr13 113363427 113363807 -6381091 + THE1C LTR MaLR 1 426 -2 279 384 26 16 chr13 113363988 113364178 -6380720 + L2 LINE L2 2824 3015 -257 225 360 54 20 chr13 113365196 113365343 -6379555 + L3 LINE CR1 986 1137 -440 241 331 92 28 chr13 113365429 113365571 -6379327 + L3 LINE CR1 1273 1423 -154 800 300 93 30 chr13 113365810 113366808 -6378090 - L1ME LINE L1 -630 5540 4476 2221 115 3 3 chr13 113366810 113367122 -6377776 + AluSx SINE Alu 1 312 0 2378 86 0 0 chr13 113367164 113367466 -6377432 - AluSc SINE Alu -7 302 1 476 200 0 0 chr13 113367687 113367772 -6377126 + FLAM SINE Alu 43 127 -16 252 337 22 11 chr13 113368192 113368281 -6376617 - LTR67 LTR ERVL -369 188 99 1605 316 53 62 chr13 113368589 113368949 -6375949 - ERVL LTR ERVL -339 5425 5063 4051 130 14 20 chr13 113368949 113369597 -6375301 + LTR9B LTR ERV1 1 644 0 1605 316 53 62 chr13 113369597 113370465 -6374433 - ERVL LTR ERVL -701 5063 4208 245 294 59 0 chr13 113370578 113370663 -6374235 - L1ME LINE L1 -3382 2764 2675 248 208 0 14 chr13 113370670 113370742 -6374156 + (TA)n Simple_repeat Simple_repeat 2 72 0 634 291 20 0 chr13 113371553 113371756 -6373142 - MLT1-int LTR MaLR -770 601 395 329 295 9 54 chr13 113372141 113372253 -6372645 + MIR SINE MIR 40 146 -62 3826 126 48 5 chr13 113372765 113373352 -6371546 + LTR9 LTR ERV1 1 612 0 801 282 64 4 chr13 113374063 113374297 -6370601 - MIR SINE MIR -12 250 3 2445 93 0 0 chr13 113374421 113374732 -6370166 - AluSq SINE Alu -2 311 1 299 309 0 0 chr13 113374900 113374968 -6369930 - L2 LINE L2 0 3313 3246 280 324 28 51 chr13 113375055 113375231 -6369667 + MIR SINE MIR 42 213 -49 334 263 105 0 chr13 113376058 113376153 -6368745 - MIR SINE MIR -102 160 56 296 248 120 8 chr13 113376540 113376657 -6368241 - L1ME1 LINE L1 -5 6161 6032 1742 181 82 24 chr13 113376665 113377193 -6367705 + MLT2A2 LTR ERVL 2 554 0 627 247 0 7 chr13 113377193 113377339 -6367559 - L1ME1 LINE L1 -139 6027 5883 601 181 42 0 chr13 113379940 113380084 -6364814 - L1MA8 LINE L1 0 6291 6142 617 154 0 0 chr13 113380097 113380214 -6364684 + L1MA8 LINE L1 6003 6119 -172 243 0 0 0 chr13 113380502 113380529 -6364369 + (A)n Simple_repeat Simple_repeat 1 27 0 1159 237 103 14 chr13 113380919 113381433 -6363465 - Zaphod DNA AcHobo -224 3807 3248 387 223 0 41 chr13 113381429 113381550 -6363348 - Zaphod DNA AcHobo -1579 2452 2337 * 180 297 47 0 chr13 113382962 113383026 -6361872 - MIR SINE MIR -73 189 123 1615 189 55 34 chr13 113383349 113383730 -6361168 + MLT1B LTR MaLR 1 389 -1 25 0 0 0 chr13 113385076 113385101 -6359797 + AT_rich Low_complexity Low_complexity 1 25 0 458 313 83 10 chr13 113386628 113386820 -6358078 + MIR SINE MIR 13 218 -44 503 160 0 0 chr13 113386894 113386969 -6357929 - AluSx SINE Alu -31 278 204 648 80 11 0 chr13 113386969 113387057 -6357841 - AluSx SINE Alu -208 105 17 1552 215 40 6 chr13 113387579 113387932 -6356966 - MLT1A1 LTR MaLR 0 365 1 230 243 29 0 chr13 113388667 113388737 -6356161 + MER69 DNA AcHobo 44 115 -1111 529 241 30 6 chr13 113389070 113389236 -6355662 - HAL1 LINE L1 -2257 250 81 341 323 86 36 chr13 113389503 113389987 -6354911 + L1MC4a LINE L1 5181 5684 -758 1852 127 47 50 chr13 113389992 113390331 -6354567 + MER1B DNA MER1_type 1 338 -1 326 336 69 9 chr13 113390349 113390566 -6354332 + L1MC4a LINE L1 5696 5925 -1883 299 302 85 8 chr13 113392404 113392533 -6352365 + MIR SINE MIR 35 173 -89 22 0 0 0 chr13 113392636 113392658 -6352240 + AT_rich Low_complexity Low_complexity 1 22 0 1316 204 79 57 chr13 113392831 113393347 -6351551 + MER67C LTR ERV1 4 511 -3 184 388 87 10 chr13 113393484 113393587 -6351311 + L2 LINE L2 3139 3249 -23 2194 127 0 0 chr13 113393985 113394285 -6350613 + AluJb SINE Alu 1 300 -12 364 224 47 12 chr13 113394438 113394523 -6350375 - MIR SINE MIR -138 124 37 185 108 27 0 chr13 113395305 113395342 -6349556 + T-rich Low_complexity Low_complexity 2 39 0 227 243 57 45 chr13 113396085 113396262 -6348636 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 256 224 63 46 chr13 113396526 113396700 -6348198 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 232 111 0 0 chr13 113396889 113396925 -6347973 - L1P LINE L1 -979 5167 5132 6587 179 43 28 chr13 113396973 113398508 -6346390 - L1MC3 LINE L1 -740 7045 5488 398 262 16 8 chr13 113399560 113399686 -6345212 - L1MC5 LINE L1 -525 7436 7310 540 70 0 0 chr13 113400153 113400224 -6344674 - MER72 LTR ERV1 -2 720 650 644 228 14 14 chr13 113400225 113400370 -6344528 + FRAM SINE Alu 1 145 -31 3131 166 7 1 chr13 113400383 113400923 -6343975 - MER72 LTR ERV1 -58 664 121 1685 145 187 11 chr13 113400918 113401276 -6343622 + MSTA LTR MaLR 8 428 0 * 600 224 8 0 chr13 113401284 113401409 -6343489 - MER72 LTR ERV1 -596 126 1 402 224 75 0 chr13 113401409 113401515 -6343383 + MER20B DNA MER1_type 35 148 -635 2501 186 89 65 chr13 113401528 113402238 -6342660 + LTR8A LTR ERV1 1 727 0 558 271 24 24 chr13 113402251 113402451 -6342447 + MER20B DNA MER1_type 534 737 -46 2195 103 0 0 chr13 113402451 113402753 -6342145 + AluSc SINE Alu 1 302 0 558 271 24 24 chr13 113402753 113402798 -6342100 + MER20B DNA MER1_type 736 780 -3 467 299 152 0 chr13 113404024 113404228 -6340670 + MIR SINE MIR 17 251 -11 593 199 3 0 chr13 113405538 113405878 -6339020 + (CA)n Simple_repeat Simple_repeat 1 341 0 1900 97 15 0 chr13 113406580 113406849 -6338049 + L1PA13 LINE L1 5880 6152 -11 2494 100 24 14 chr13 113406873 113407244 -6337654 - THE1C LTR MaLR 0 375 1 1550 43 0 0 chr13 113408269 113408454 -6336444 + AluY SINE Alu 1 185 -126 256 360 137 7 chr13 113408492 113408645 -6336253 - MIR SINE MIR -56 206 34 2192 108 0 23 chr13 113409780 113410086 -6334812 + AluSx SINE Alu 1 299 -13 424 289 193 35 chr13 113410279 113410507 -6334391 + L2 LINE L2 2090 2353 -961 280 226 75 118 chr13 113410517 113410849 -6334049 + L1MC5 LINE L1 7612 7929 -32 223 315 22 0 chr13 113410855 113410944 -6333954 + L2 LINE L2 2396 2486 -828 * 614 274 142 59 chr13 113410942 113411350 -6333548 - L2 LINE L2 -368 2946 2505 918 36 0 0 chr13 113411365 113411475 -6333423 - L1PA5 LINE L1 -8 6146 6037 2371 89 0 0 chr13 113412677 113412979 -6331919 + AluY SINE Alu 1 302 -9 21 0 0 0 chr13 113413193 113413214 -6331684 + AT_rich Low_complexity Low_complexity 1 21 0 293 252 64 24 chr13 113413612 113413753 -6331145 - MLT1J1 LTR MaLR -202 207 62 268 234 60 162 chr13 113414838 113415005 -6329893 - MER5A DNA MER1_type -39 150 1 444 219 206 14 chr13 113415029 113415175 -6329723 - MER5A DNA MER1_type 0 189 16 393 324 181 0 chr13 113415590 113415800 -6329098 + MIR SINE MIR 15 262 0 261 329 65 35 chr13 113415994 113416225 -6328673 + L2 LINE L2 2619 2856 -458 316 299 31 16 chr13 113416324 113416451 -6328447 + L2 LINE L2 3173 3301 -12 18330 177 10 11 chr13 113416457 113422002 -6322896 + L1PA14 LINE L1 4 5911 -1688 2162 138 0 16 chr13 113422002 113422313 -6322585 + AluSg SINE Alu 1 306 -4 18330 177 10 11 chr13 113422313 113423991 -6320907 + L1PA14 LINE L1 5911 7590 -9 30 27 0 0 chr13 113424001 113424038 -6320860 + AT_rich Low_complexity Low_complexity 1 37 0 2294 110 0 0 chr13 113425212 113425560 -6319338 + AluSx SINE Alu 1 348 0 420 267 167 0 chr13 113426110 113426260 -6318638 - MER5A DNA MER1_type -6 183 9 914 256 173 28 chr13 113426481 113426793 -6318105 - MLT1H1 LTR MaLR 0 555 161 4386 87 50 38 chr13 113426793 113427473 -6317425 + LTR12 LTR ERV1 1 688 0 914 256 173 28 chr13 113427473 113427593 -6317305 - MLT1H1 LTR MaLR -394 161 60 24 0 0 0 chr13 113427910 113427934 -6316964 + AT_rich Low_complexity Low_complexity 1 24 0 2056 92 42 7 chr13 113427983 113428267 -6316631 + AluSc SINE Alu 3 296 -13 28 29 0 0 chr13 113428310 113428345 -6316553 + AT_rich Low_complexity Low_complexity 1 35 0 216 241 0 0 chr13 113428375 113428433 -6316465 + (TA)n Simple_repeat Simple_repeat 1 58 0 1260 170 45 78 chr13 113429275 113429657 -6315241 + MLT1B LTR MaLR 3 371 -19 2716 190 18 39 chr13 113429750 113429785 -6315113 - L1MC3 LINE L1 0 7785 7751 2335 73 7 3 chr13 113429785 113430086 -6314812 - AluSc SINE Alu -7 302 1 2716 190 18 39 chr13 113430086 113430661 -6314237 - L1MC3 LINE L1 -34 7751 7188 2315 108 0 6 chr13 113430674 113430988 -6313910 - AluSx SINE Alu 0 312 1 240 250 113 12 chr13 113431012 113431092 -6313806 + MIR SINE MIR 94 181 -81 590 195 60 7 chr13 113431107 113431256 -6313642 - L1M4 LINE L1 -6385 157 1 253 238 25 12 chr13 113431265 113431345 -6313553 + MER69 DNA AcHobo 2430 2510 -16 436 288 4 93 chr13 113431360 113431596 -6313302 - MIR SINE MIR -33 229 15 225 241 0 0 chr13 113433509 113433563 -6311335 - L1ME LINE L1 -391 5730 5677 30 69 0 0 chr13 113434554 113434612 -6310286 + AT_rich Low_complexity Low_complexity 1 58 0 753 285 60 64 chr13 113435060 113435150 -6309748 - L1MC4a LINE L1 -1911 5897 5808 1835 181 36 3 chr13 113435150 113435486 -6309412 - MER7A DNA MER2_type 0 346 2 753 285 60 64 chr13 113435486 113435942 -6308956 - L1MC4a LINE L1 -2000 5808 5353 347 286 82 55 chr13 113436301 113436521 -6308377 - L1MC4a LINE L1 -1177 4969 4744 626 325 20 16 chr13 113437537 113437783 -6307115 + MIR SINE MIR 13 259 -3 2426 64 3 0 chr13 113438210 113438506 -6306392 - AluY SINE Alu -14 297 1 1864 144 77 15 chr13 113440112 113440451 -6304447 - THE1B LTR MaLR -4 360 1 306 349 176 12 chr13 113440665 113441006 -6303892 + HAL1 LINE L1 973 1369 -1138 366 323 136 23 chr13 113442312 113442622 -6302276 - L3 LINE CR1 -11 1566 1222 1912 158 22 0 chr13 113442842 113443159 -6301739 - MER4D LTR ERV1 0 903 580 5037 201 92 105 chr13 113443159 113444936 -6299962 + MER52A LTR ERV1 2 1755 0 3127 158 37 14 chr13 113444937 113445507 -6299391 - MER4D LTR ERV1 -320 583 1 29 84 0 0 chr13 113445855 113445926 -6298972 + AT_rich Low_complexity Low_complexity 1 71 0 701 210 56 0 chr13 113446437 113446580 -6298318 - MER20 DNA MER1_type -1 218 68 518 291 117 0 chr13 113446906 113447085 -6297813 + MIR SINE MIR 4 203 -59 310 330 84 26 chr13 113447460 113447651 -6297247 - MLT1-int LTR MaLR -474 897 696 2642 88 16 21 chr13 113447651 113448028 -6296870 - THE1C LTR MaLR 0 375 1 927 276 65 6 chr13 113448229 113448685 -6296213 - MLT1-int LTR MaLR -765 606 3 248 326 22 0 chr13 113448707 113448796 -6296102 - MLT1E LTR MaLR -167 426 336 434 243 157 7 chr13 113448848 113448988 -6295910 + MLT1G LTR MaLR 429 589 -1 1256 194 4 24 chr13 113451033 113451281 -6293617 + AluJo SINE Alu 42 284 -28 216 176 0 0 chr13 113451364 113451398 -6293500 - MIR3 SINE MIR -17 191 158 22 0 0 0 chr13 113452589 113452611 -6292287 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 113452839 113452863 -6292035 + AT_rich Low_complexity Low_complexity 1 24 0 415 226 132 0 chr13 113452908 113453014 -6291884 - L1ME LINE L1 -545 5621 5502 255 311 6 73 chr13 113453171 113453335 -6291563 + 7SK RNA RNA 40 192 -1 359 310 49 14 chr13 113453558 113453700 -6291198 + L2 LINE L2 3167 3313 0 542 207 30 7 chr13 113453744 113453879 -6291019 + L1MA10 LINE L1 6179 6316 -18 349 333 91 6 chr13 113454274 113454439 -6290459 - MIR SINE MIR -79 183 5 182 281 16 47 chr13 113454504 113454568 -6290330 + L2 LINE L2 3137 3198 -74 1023 136 0 0 chr13 113455020 113455174 -6289724 + AluSg/x SINE Alu 154 307 -3 2176 86 0 54 chr13 113455490 113455635 -6289263 + AluY SINE Alu 1 121 -190 2424 26 46 20 chr13 113455635 113455938 -6288960 + AluY SINE Alu 1 311 0 2176 86 0 54 chr13 113455938 113456107 -6288791 + AluY SINE Alu 121 298 -13 23 0 0 0 chr13 113456195 113456218 -6288680 + AT_rich Low_complexity Low_complexity 1 23 0 252 86 0 0 chr13 113460921 113460956 -6283942 + (A)n Simple_repeat Simple_repeat 1 35 0 430 314 15 7 chr13 113462419 113462556 -6282342 + MIR SINE MIR 15 152 -110 183 274 50 57 chr13 113463249 113463416 -6281482 + MIR SINE MIR 61 226 -36 248 362 29 9 chr13 113464981 113465086 -6279812 - L2 LINE L2 -6 3266 3160 2143 98 3 16 chr13 113465937 113466073 -6278825 + AluSq SINE Alu 1 137 -176 2272 76 3 16 chr13 113466073 113466387 -6278511 + AluSp SINE Alu 1 310 -3 2143 98 3 16 chr13 113466387 113466556 -6278342 + AluSq SINE Alu 137 302 -11 637 233 20 7 chr13 113466666 113466812 -6278086 + MER69 DNA AcHobo 1 148 -1078 457 190 0 0 chr13 113466805 113466884 -6278014 + MER69 DNA AcHobo 2448 2526 0 * 300 303 73 0 chr13 113468454 113468563 -6276335 - L2 LINE L2 -8 3264 3148 235 342 53 9 chr13 113468915 113469029 -6275869 - MIR3 SINE MIR -48 160 42 1986 135 3 7 chr13 113470682 113470979 -6273919 - AluSx SINE Alu -16 296 1 1506 168 149 114 chr13 113471365 113472055 -6272843 - Charlie1a DNA MER1_type -2 1453 740 2241 198 106 34 chr13 113472102 113472633 -6272265 - Charlie1a DNA MER1_type -886 569 1 288 293 103 26 chr13 113472634 113472750 -6272148 - L3 LINE CR1 -8 1569 1445 220 293 160 27 chr13 113474039 113474227 -6270671 - L2 LINE L2 -937 2377 2165 214 398 12 0 chr13 113476175 113476258 -6268640 - L2 LINE L2 -36 3277 3194 198 71 0 0 chr13 113477430 113477458 -6267440 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 378 255 179 7 chr13 113483959 113484104 -6260794 - MIR SINE MIR -61 201 32 2441 46 16 0 chr13 113485522 113485825 -6259073 - AluY SINE Alu -2 309 2 1363 214 76 6 chr13 113486079 113486420 -6258478 + MLT1A1 LTR MaLR 1 365 0 12865 23 2 0 chr13 113486497 113488783 -6256115 - L1PA3 LINE L1 -5 6150 3862 284 361 118 0 chr13 113488922 113489041 -6255857 + L2 LINE L2 3140 3272 0 21 0 0 0 chr13 113489085 113489106 -6255792 + AT_rich Low_complexity Low_complexity 1 21 0 581 257 141 16 chr13 113490091 113490340 -6254558 - L1MC4 LINE L1 -146 7896 7617 1147 251 138 33 chr13 113490346 113490797 -6254101 + MLT1D LTR MaLR 8 505 0 647 253 35 0 chr13 113490811 113490985 -6253913 + MLT1D-int LTR MaLR 46 225 -1146 2301 86 3 0 chr13 113491572 113491874 -6253024 - AluY SINE Alu -8 303 1 1948 225 65 47 chr13 113492260 113493148 -6251750 + L1MB8 LINE L1 1572 2513 -4444 229 249 65 108 chr13 113493248 113493601 -6251297 + L1MB8 LINE L1 2480 2817 -4321 1110 199 46 35 chr13 113493626 113493887 -6251011 + AluJo SINE Alu 1 264 -48 808 239 27 55 chr13 113493928 113494330 -6250568 + L1MB8 LINE L1 2777 3167 -3790 988 234 98 41 chr13 113494354 113494721 -6250177 + MLT1D LTR MaLR 118 505 0 2674 245 46 19 chr13 113494721 113495685 -6249213 + L1MB8 LINE L1 3158 4147 -2810 2240 203 60 45 chr13 113495698 113496236 -6248662 - MER44D DNA MER2_type -1 704 159 857 168 90 26 chr13 113496236 113496391 -6248507 + FRAM SINE Alu 1 161 -15 948 207 0 6 chr13 113496396 113496560 -6248338 - MER44D DNA MER2_type -542 163 1 1823 233 12 8 chr13 113496574 113497068 -6247830 + L1MB8 LINE L1 4181 4676 -2281 770 189 92 61 chr13 113497068 113497264 -6247634 - MLT1A2 LTR MaLR 0 374 173 264 100 0 0 chr13 113497265 113497305 -6247593 + (GA)n Simple_repeat Simple_repeat 1 40 0 466 179 0 0 chr13 113497314 113497409 -6247489 - MLT1A2 LTR MaLR -215 175 81 216 0 0 0 chr13 113497411 113497435 -6247463 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1389 238 28 12 chr13 113497435 113497834 -6247064 + L1MB8 LINE L1 4765 5169 -1788 1245 226 93 75 chr13 113497847 113498074 -6246824 + MLT1C LTR MaLR 7 228 -239 186 103 0 0 chr13 113498074 113498103 -6246795 + (CA)n Simple_repeat Simple_repeat 1 29 0 1245 226 93 75 chr13 113498103 113498318 -6246580 + MLT1C LTR MaLR 228 457 -10 3933 206 43 17 chr13 113498337 113499912 -6244986 + L1MB8 LINE L1 5369 6984 -5 5315 129 15 1 chr13 113500297 113501096 -6243802 - L1PA15 LINE L1 -4 6161 5352 * 8173 212 20 16 chr13 113501089 113503007 -6241891 - L1PA15 LINE L1 -1098 5048 3122 9336 28 2 1 chr13 113503008 113504903 -6239995 - L1PA4 LINE L1 -3 6152 4258 6569 32 0 0 chr13 113504903 113505680 -6239218 + L1PA3 LINE L1 5375 6151 -4 270 0 0 0 chr13 113506724 113506754 -6238144 + (CA)n Simple_repeat Simple_repeat 2 31 0 271 385 9 0 chr13 113506789 113506898 -6238000 - L1MC/D LINE L1 -2160 5648 5539 536 103 0 0 chr13 113506898 113506976 -6237922 + L1PA7 LINE L1 6062 6139 -15 248 194 21 54 chr13 113506979 113507072 -6237826 - L1MC4 LINE L1 -1339 6703 6614 309 209 0 0 chr13 113507073 113507140 -6237758 + (TA)n Simple_repeat Simple_repeat 2 68 0 863 109 15 0 chr13 113507381 113507518 -6237380 + (TATATG)n Simple_repeat Simple_repeat 2 140 0 1077 187 4 0 chr13 113507620 113507898 -6237000 + (TA)n Simple_repeat Simple_repeat 1 280 0 371 316 94 27 chr13 113507956 113508285 -6236613 - L1M4 LINE L1 -3008 3138 2788 226 211 39 0 chr13 113508436 113508488 -6236410 - MLT1H LTR MaLR -171 384 331 362 201 119 52 chr13 113508579 113508701 -6236197 - MLT1H LTR MaLR -390 159 53 411 285 55 94 chr13 113509064 113509555 -6235343 + L1M4 LINE L1 2676 3147 -2999 418 290 126 48 chr13 113509973 113510387 -6234511 - L1M4 LINE L1 -2779 3367 2921 202 191 0 0 chr13 113510437 113510469 -6234429 + CT-rich Low_complexity Low_complexity 3 37 -7 2291 57 13 10 chr13 113510469 113510767 -6234131 - AluY SINE Alu -12 299 1 236 261 43 14 chr13 113511335 113511404 -6233494 - L2 LINE L2 -50 3263 3193 22 0 0 0 chr13 113511465 113511487 -6233411 + AT_rich Low_complexity Low_complexity 1 22 0 2316 42 46 0 chr13 113512396 113512679 -6232219 - AluY SINE Alu -13 298 3 1951 189 52 12 chr13 113513547 113513970 -6230928 - L1MA4 LINE L1 -3 6297 5858 3906 147 56 37 chr13 113513970 113514754 -6230144 + L1MA6 LINE L1 5498 6296 -4 22 0 0 0 chr13 113514754 113514776 -6230122 + AT_rich Low_complexity Low_complexity 1 22 0 227 56 74 0 chr13 113514852 113514906 -6229992 + (TA)n Simple_repeat Simple_repeat 1 58 0 24 32 0 0 chr13 113515194 113515225 -6229673 + AT_rich Low_complexity Low_complexity 1 31 0 228 204 0 0 chr13 113516841 113516885 -6228013 - L1P5 LINE L1 -702 5449 5406 4218 93 2 3 chr13 113516885 113517478 -6227420 + L1PB1 LINE L1 5555 6146 -5 319 326 80 6 chr13 113517521 113517696 -6227202 - MIR SINE MIR -69 193 6 210 277 28 119 chr13 113518284 113518461 -6226437 - L3b LINE CR1 -197 1386 1226 279 54 0 0 chr13 113520061 113520098 -6224800 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 317 0 89 chr13 113520361 113520462 -6224436 - MIR SINE MIR -10 252 161 411 21 0 0 chr13 113520555 113520603 -6224295 + (CA)n Simple_repeat Simple_repeat 1 48 0 283 320 111 30 chr13 113520957 113521319 -6223579 - L1ME LINE L1 -380 5741 5351 3847 150 29 6 chr13 113522290 113522949 -6221949 + Tigger2 DNA MER2_type 1 674 -2044 2365 143 37 26 chr13 113522950 113523378 -6221520 + Tigger2a DNA MER2_type 2 434 0 210 180 33 33 chr13 113523386 113523447 -6221451 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 309 252 44 44 chr13 113523447 113523582 -6221316 - L1MC4 LINE L1 -1337 6705 6571 28 86 0 0 chr13 113524576 113524646 -6220252 + AT_rich Low_complexity Low_complexity 1 70 0 843 239 43 0 chr13 113524771 113525005 -6219893 - L1MD3 LINE L1 -21 7974 7731 360 307 73 0 chr13 113526199 113526336 -6218562 - MIR SINE MIR -6 256 110 3794 93 28 0 chr13 113526597 113527136 -6217762 - MER41A LTR ERV1 0 554 1 241 299 85 52 chr13 113528354 113529034 -6215864 - L1ME LINE L1 -1099 5047 4345 4141 218 64 18 chr13 113529476 113531184 -6213714 - L1MB5 LINE L1 -8 6166 4538 1317 208 119 24 chr13 113531184 113531521 -6213377 - MLT1A2 LTR MaLR -4 370 2 4141 218 64 18 chr13 113531521 113531681 -6213217 - L1MB5 LINE L1 -1636 4538 4387 2120 132 3 0 chr13 113531681 113531977 -6212921 - AluSq SINE Alu -16 297 1 4141 218 64 18 chr13 113531977 113532121 -6212777 - L1MB5 LINE L1 -1787 4387 4065 27 87 0 0 chr13 113532725 113532794 -6212104 + AT_rich Low_complexity Low_complexity 1 69 0 363 356 0 0 chr13 113533011 113533126 -6211772 - L2 LINE L2 0 3313 3199 840 135 7 0 chr13 113533842 113533983 -6210915 + L1MA8 LINE L1 5542 5683 -608 520 193 0 0 chr13 113533983 113534071 -6210827 - 5S rRNA rRNA -31 90 3 3143 147 32 12 chr13 113534071 113534669 -6210229 + L1MA8 LINE L1 5676 6285 -6 207 100 0 0 chr13 113535858 113535888 -6209010 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 455 274 226 0 chr13 113536699 113536885 -6208013 - MIR SINE MIR 0 262 35 21 57 0 0 chr13 113537702 113537737 -6207161 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr13 113538095 113538139 -6206759 + AT_rich Low_complexity Low_complexity 1 44 0 335 346 23 31 chr13 113538434 113538564 -6206334 + L2 LINE L2 3167 3295 -18 372 284 81 78 chr13 113538938 113539410 -6205488 - L1ME4a LINE L1 -2 6119 5647 243 0 0 0 chr13 113539758 113539785 -6205113 + (A)n Simple_repeat Simple_repeat 1 27 0 26 74 0 0 chr13 113540976 113541030 -6203868 + AT_rich Low_complexity Low_complexity 1 54 0 2156 128 39 28 chr13 113541752 113542112 -6202786 - THE1B LTR MaLR 0 364 1 369 285 89 6 chr13 113542258 113542416 -6202482 - L1MC4a LINE L1 0 7808 7638 255 249 41 96 chr13 113542579 113542924 -6201974 + L1M4 LINE L1 2874 3199 -2947 22 56 0 0 chr13 113542986 113543022 -6201876 + AT_rich Low_complexity Low_complexity 1 36 0 342 282 140 34 chr13 113543086 113543728 -6201170 + L1M4 LINE L1 3277 3986 -2160 216 282 29 26 chr13 113543823 113544007 -6200891 - L2 LINE L2 -3 3310 3073 311 293 62 114 chr13 113544021 113544294 -6200604 - MIR SINE MIR 0 262 4 1031 283 94 13 chr13 113544301 113544349 -6200549 - L2 LINE L2 -217 3055 3012 2071 131 47 36 chr13 113544349 113544709 -6200189 + THE1B LTR MaLR 1 364 0 1031 283 94 13 chr13 113544709 113545099 -6199799 - L2 LINE L2 -260 3012 2575 1634 201 48 30 chr13 113545311 113545748 -6199150 + MLT1C LTR MaLR 23 467 0 765 295 214 19 chr13 113545748 113546229 -6198669 - L2 LINE L2 -735 2579 2005 2655 110 3 0 chr13 113546378 113546750 -6198148 + THE1C LTR MaLR 3 375 0 438 274 222 13 chr13 113546783 113547013 -6197885 - L2 LINE L2 -722 2592 2315 439 263 26 116 chr13 113547240 113547472 -6197426 + MLT1I LTR MaLR 198 408 -1 650 205 42 42 chr13 113547858 113547976 -6196922 + MER45A DNA AcHobo 5 125 -1456 2227 143 31 14 chr13 113547976 113548333 -6196565 + THE1B LTR MaLR 1 363 -1 650 205 42 42 chr13 113548333 113548380 -6196518 + MER45A DNA AcHobo 124 170 -8 210 231 123 15 chr13 113548506 113548571 -6196327 + MIR SINE MIR 175 246 -16 21 0 0 0 chr13 113550474 113550495 -6194403 + AT_rich Low_complexity Low_complexity 1 21 0 4424 132 12 30 chr13 113550643 113551039 -6193859 - L1PA15 LINE L1 0 6165 5787 2124 129 0 3 chr13 113551039 113551348 -6193550 - AluSg SINE Alu -2 308 1 4424 132 12 30 chr13 113551348 113551688 -6193210 - L1PA15 LINE L1 -378 5787 5442 743 162 0 14 chr13 113551688 113551830 -6193068 - LTR2B LTR ERV1 0 490 351 998 93 25 0 chr13 113551830 113551991 -6192907 - L1P4 LINE L1 -664 5497 5333 * 2802 232 29 24 chr13 113551990 113552875 -6192023 - L1P LINE L1 -3340 2806 1917 2153 161 48 22 chr13 113553026 113553067 -6191831 - MSTA LTR MaLR 0 428 390 2362 84 0 3 chr13 113553067 113553366 -6191532 + AluY SINE Alu 1 298 -13 2153 161 48 22 chr13 113553366 113553741 -6191157 - MSTA LTR MaLR -38 390 1 332 216 21 0 chr13 113554204 113554301 -6190597 - L1MB8 LINE L1 -2 6176 6078 266 164 0 33 chr13 113554379 113554440 -6190458 + GA-rich Low_complexity Low_complexity 2 60 0 1330 240 44 5 chr13 113554506 113554919 -6189979 - L1MD3 LINE L1 -12 7983 7555 25 0 0 0 chr13 113555858 113555883 -6189015 + AT_rich Low_complexity Low_complexity 1 25 0 4789 178 30 23 chr13 113555886 113557013 -6187885 - L1MC2 LINE L1 -7 6337 5204 578 308 6 7 chr13 113557027 113557215 -6187683 - MIR SINE MIR -66 142 6 360 0 0 0 chr13 113558531 113558571 -6186327 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 54 0 0 chr13 113558999 113559036 -6185862 + AT_rich Low_complexity Low_complexity 1 37 0 1064 206 83 68 chr13 113559877 113559956 -6184942 - MLT1B LTR MaLR 0 390 314 2228 132 3 0 chr13 113559956 113560266 -6184632 - AluSx SINE Alu -1 311 1 1064 206 83 68 chr13 113560266 113560570 -6184328 - MLT1B LTR MaLR -76 314 1 13865 160 83 13 chr13 113560823 113562187 -6182711 + L1PBa LINE L1 1 1269 -5593 2356 76 6 28 chr13 113562187 113562504 -6182394 + AluY SINE Alu 1 310 -1 13865 160 83 13 chr13 113562504 113565116 -6179782 + L1PBa LINE L1 1269 4259 -2603 3884 171 88 6 chr13 113565216 113566116 -6178782 - L1MD1 LINE L1 -50 6192 5225 1364 237 44 25 chr13 113566134 113566610 -6178288 - L1MD1 LINE L1 -1794 4352 3868 200 265 24 48 chr13 113567666 113567749 -6177149 - MIR3 SINE MIR -47 161 81 189 249 22 133 chr13 113568030 113568211 -6176687 + L2 LINE L2 2426 2586 -728 183 156 0 0 chr13 113568677 113568709 -6176189 + CT-rich Low_complexity Low_complexity 1 32 0 2260 99 7 0 chr13 113568709 113569002 -6175896 - AluSc SINE Alu -14 295 1 26 0 0 0 chr13 113569483 113569509 -6175389 + AT_rich Low_complexity Low_complexity 1 26 0 783 225 33 78 chr13 113570476 113570784 -6174114 + MER77 LTR ERV1 355 618 -6 1747 194 15 44 chr13 113571166 113571574 -6173324 - MSTD LTR MaLR 0 396 1 1742 145 47 4 chr13 113572132 113572408 -6172490 + AluJo SINE Alu 25 312 0 2435 86 0 0 chr13 113572411 113572712 -6172186 + AluSq SINE Alu 1 301 -12 237 157 0 0 chr13 113572712 113572763 -6172135 + L1M4c LINE L1 1534 1584 -5524 * 316 156 78 0 chr13 113572732 113572796 -6172102 + L1M4c LINE L1 1953 2021 -5009 1435 171 15 90 chr13 113572797 113573130 -6171768 + AluJb SINE Alu 3 310 -2 821 107 36 12 chr13 113573273 113573441 -6171457 + CT-rich Low_complexity Low_complexity 3 174 0 432 322 94 49 chr13 113574592 113574859 -6170039 + L2 LINE L2 2994 3272 0 316 353 87 5 chr13 113574936 113575120 -6169778 - L2 LINE L2 -833 2481 2283 25 31 0 0 chr13 113575350 113575382 -6169516 + AT_rich Low_complexity Low_complexity 1 32 0 2042 138 20 0 chr13 113575681 113575977 -6168921 + AluSp SINE Alu 11 312 -1 269 189 38 0 chr13 113577998 113578051 -6166847 - Tigger3(Golem) DNA MER2_type -42 2987 2933 1889 193 14 11 chr13 113578334 113578697 -6166201 - MLT1A1 LTR MaLR 0 365 2 2464 62 3 0 chr13 113578755 113579096 -6165802 + AluY SINE Alu 1 342 0 214 350 0 40 chr13 113579259 113579359 -6165539 - MIR SINE MIR -3 259 164 1654 175 43 46 chr13 113580025 113580374 -6164524 - MER7A DNA MER2_type 0 346 1 308 311 163 38 chr13 113580850 113581059 -6163839 + MIR SINE MIR 20 254 -8 3316 34 56 0 chr13 113581576 113581990 -6162908 + L1PA4 LINE L1 5719 6155 0 437 196 57 38 chr13 113582658 113582816 -6162082 - MER103 DNA DNA 0 166 6 209 216 20 0 chr13 113582926 113582977 -6161921 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 1430 168 0 4 chr13 113583039 113583283 -6161615 - Tigger5 DNA MER2_type 0 2323 2081 423 203 13 0 chr13 113583280 113583359 -6161539 - Tigger5 DNA MER2_type -2231 92 13 * 302 207 59 18 chr13 113584224 113584393 -6160505 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 396 261 117 39 chr13 113584870 113585100 -6159798 - L1MC4a LINE L1 -1921 5887 5640 225 156 312 13 chr13 113585179 113585256 -6159642 - L1MC4a LINE L1 -2354 5454 5355 517 319 110 45 chr13 113585263 113585977 -6158921 - L1 LINE L1 -753 5393 4613 317 282 16 11 chr13 113586055 113586243 -6158655 - L1 LINE L1 -1613 4533 4345 4040 218 64 18 chr13 113586685 113588393 -6156505 - L1MB5 LINE L1 -8 6402 4774 1319 208 119 24 chr13 113588393 113588730 -6156168 - MLT1A2 LTR MaLR -4 370 2 4040 218 64 18 chr13 113588730 113588890 -6156008 - L1MB5 LINE L1 -1636 4774 4623 2144 132 3 0 chr13 113588890 113589186 -6155712 - AluSq SINE Alu -16 297 1 4040 218 64 18 chr13 113589186 113589330 -6155568 - L1MB5 LINE L1 -1787 4623 4301 3282 248 55 79 chr13 113589323 113589885 -6155013 - L1MB5 LINE L1 -2393 3989 3415 * 1863 126 19 58 chr13 113589885 113590195 -6154703 - AluSx SINE Alu -12 300 3 3282 248 55 79 chr13 113590195 113592356 -6152542 - L1MB5 LINE L1 -2967 3415 1184 2265 184 19 19 chr13 113592358 113592835 -6152063 - L1MC1 LINE L1 -11 6820 6344 831 168 43 6 chr13 113592835 113592993 -6151905 + L1MC1 LINE L1 6156 6322 -11 740 265 25 4 chr13 113592994 113593239 -6151659 + L1M4c LINE L1 1188 1437 -4947 805 225 135 48 chr13 113593239 113593403 -6151495 - L1MC1 LINE L1 -1398 5246 5098 1874 113 19 0 chr13 113593403 113593669 -6151229 + AluSg SINE Alu 3 273 -37 338 0 24 0 chr13 113593675 113593717 -6151181 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 805 225 135 48 chr13 113593717 113593923 -6150975 - L1MC1 LINE L1 -1550 5094 4836 487 247 11 86 chr13 113593993 113594260 -6150638 - L1MC1 LINE L1 -5425 1117 871 27 87 0 0 chr13 113594690 113594759 -6150139 + AT_rich Low_complexity Low_complexity 1 69 0 365 356 0 0 chr13 113594976 113595091 -6149807 - L2 LINE L2 0 3313 3199 891 129 7 14 chr13 113595801 113595948 -6148950 + L1MA8 LINE L1 5538 5683 -608 555 193 0 0 chr13 113595948 113596036 -6148862 - 5S rRNA rRNA -31 90 3 3186 147 32 12 chr13 113596036 113596634 -6148264 + L1MA8 LINE L1 5676 6285 -6 216 158 0 0 chr13 113597816 113597854 -6147044 + T-rich Low_complexity Low_complexity 1 38 0 453 274 226 0 chr13 113598665 113598851 -6146047 - MIR SINE MIR 0 262 35 21 57 0 0 chr13 113599668 113599703 -6145195 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr13 113600061 113600105 -6144793 + AT_rich Low_complexity Low_complexity 1 44 0 333 346 23 31 chr13 113600400 113600530 -6144368 + L2 LINE L2 3167 3295 -18 372 284 81 78 chr13 113600904 113601376 -6143522 - L1ME4a LINE L1 -2 6119 5647 279 0 0 0 chr13 113601723 113601754 -6143144 + (A)n Simple_repeat Simple_repeat 1 31 0 26 74 0 0 chr13 113602945 113602999 -6141899 + AT_rich Low_complexity Low_complexity 1 54 0 2152 128 39 28 chr13 113603721 113604081 -6140817 - THE1B LTR MaLR 0 364 1 410 286 87 11 chr13 113604209 113604385 -6140513 - L1MC4a LINE L1 0 7808 6080 320 249 91 119 chr13 113604390 113605697 -6139201 + L1 LINE L1 2716 3986 -2160 217 282 29 26 chr13 113605792 113605976 -6138922 - L2 LINE L2 -3 3310 3073 319 293 62 114 chr13 113605990 113606263 -6138635 - MIR SINE MIR 0 262 4 2069 131 47 36 chr13 113606318 113606678 -6138220 + THE1B LTR MaLR 1 364 0 1009 282 74 13 chr13 113606689 113607068 -6137830 - L2 LINE L2 -338 2976 2575 1777 201 48 30 chr13 113607280 113607717 -6137181 + MLT1C LTR MaLR 23 467 0 758 295 214 19 chr13 113607717 113608198 -6136700 - L2 LINE L2 -735 2579 2005 2632 113 3 0 chr13 113608347 113608719 -6136179 + THE1C LTR MaLR 3 375 0 436 274 222 13 chr13 113608752 113608982 -6135916 - L2 LINE L2 -722 2592 2315 234 265 96 12 chr13 113609096 113609179 -6135719 + MLT1I LTR MaLR 33 122 -287 526 259 26 116 chr13 113609209 113609441 -6135457 + MLT1I LTR MaLR 198 408 -1 708 205 41 41 chr13 113609827 113609945 -6134953 + MER45A DNA AcHobo 5 125 -1456 2229 143 31 14 chr13 113609945 113610302 -6134596 + THE1B LTR MaLR 1 363 -1 708 205 41 41 chr13 113610302 113610354 -6134544 + MER45A DNA AcHobo 124 175 -3 214 231 123 15 chr13 113610475 113610540 -6134358 + MIR SINE MIR 175 246 -16 21 0 0 0 chr13 113612443 113612464 -6132434 + AT_rich Low_complexity Low_complexity 1 21 0 4472 130 12 30 chr13 113612613 113613009 -6131889 - L1PA15 LINE L1 0 6165 5787 2102 129 0 3 chr13 113613009 113613318 -6131580 - AluSg SINE Alu -2 308 1 4472 130 12 30 chr13 113613318 113613658 -6131240 - L1PA15 LINE L1 -378 5787 5442 791 162 0 14 chr13 113613658 113613800 -6131098 - LTR2B LTR ERV1 0 490 351 1046 93 25 0 chr13 113613800 113613961 -6130937 - L1P4 LINE L1 -664 5497 5333 * 3059 232 29 24 chr13 113613960 113614845 -6130053 - L1P LINE L1 -3340 2806 1917 2153 161 48 22 chr13 113614996 113615037 -6129861 - MSTA LTR MaLR 0 428 390 2365 80 0 3 chr13 113615037 113615336 -6129562 + AluY SINE Alu 1 298 -13 2153 161 48 22 chr13 113615336 113615711 -6129187 - MSTA LTR MaLR -38 390 1 346 216 21 0 chr13 113616174 113616271 -6128627 - L1MB8 LINE L1 -2 6176 6078 266 164 0 33 chr13 113616349 113616410 -6128488 + GA-rich Low_complexity Low_complexity 2 60 0 1459 242 75 4 chr13 113616476 113616927 -6127971 - L1MD3 LINE L1 -12 7983 7501 25 0 0 0 chr13 113617828 113617853 -6127045 + AT_rich Low_complexity Low_complexity 1 25 0 5118 178 30 23 chr13 113617856 113618983 -6125915 - L1MC2 LINE L1 -7 6337 5204 577 293 34 39 chr13 113618997 113619185 -6125713 - MIR SINE MIR -66 142 6 342 0 0 0 chr13 113620502 113620540 -6124358 + (CA)n Simple_repeat Simple_repeat 2 39 0 23 54 0 0 chr13 113620968 113621005 -6123893 + AT_rich Low_complexity Low_complexity 1 37 0 1081 206 83 68 chr13 113621846 113621925 -6122973 - MLT1B LTR MaLR 0 390 314 2194 132 3 0 chr13 113621925 113622235 -6122663 - AluSx SINE Alu -1 311 1 1081 206 83 68 chr13 113622235 113622539 -6122359 - MLT1B LTR MaLR -76 314 1 14765 162 58 16 chr13 113622792 113624156 -6120742 + L1PB1 LINE L1 1 1307 -5560 2326 76 6 29 chr13 113624156 113624472 -6120426 + AluY SINE Alu 1 309 -2 14765 162 58 16 chr13 113624472 113629674 -6115224 + L1PB1 LINE L1 1307 6866 -1 219 268 28 0 chr13 113629862 113629933 -6114965 + L3 LINE CR1 1229 1301 -276 363 261 110 10 chr13 113632313 113632456 -6112442 + MIR SINE MIR 37 192 -62 369 328 22 0 chr13 113632523 113632657 -6112241 + L2 LINE L2 3136 3272 0 301 292 26 91 chr13 113633361 113633515 -6111383 + L1ME LINE L1 26 169 -5901 726 157 66 54 chr13 113633516 113633682 -6111216 + L1PB4 LINE L1 5980 6147 -9 717 255 65 0 chr13 113633788 113633988 -6110910 + L1ME LINE L1 315 527 -5543 2857 197 45 17 chr13 113635044 113635735 -6109163 + MER67C LTR ERV1 1 710 0 528 290 78 99 chr13 113638432 113638908 -6105990 + MLT1J LTR MaLR 3 468 -43 198 0 0 0 chr13 113638911 113638933 -6105965 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1977 122 0 0 chr13 113638940 113639210 -6105688 - AluSx SINE Alu -42 270 1 1387 206 176 8 chr13 113639223 113639621 -6105277 + MLT1C LTR MaLR 3 467 0 523 297 85 9 chr13 113640272 113640484 -6104414 + MIR SINE MIR 27 254 -8 540 40 0 26 chr13 113641010 113641086 -6103812 - L1PA6 LINE L1 -1 6153 6080 1897 207 62 21 chr13 113641964 113642103 -6102795 - L1MC3 LINE L1 0 7785 7653 2341 48 0 0 chr13 113642103 113642392 -6102506 - L1PA6 LINE L1 -2 6152 5864 1897 207 62 21 chr13 113642392 113642768 -6102130 - L1MC3 LINE L1 -132 7653 7249 320 172 17 0 chr13 113642770 113642828 -6102070 - MLT1F1 LTR MaLR -459 108 50 883 205 98 13 chr13 113642836 113643105 -6101793 - L1MC3 LINE L1 -672 7118 6859 279 0 0 0 chr13 113643130 113643161 -6101737 + (TC)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr13 113643160 113643190 -6101708 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 232 307 122 28 chr13 113644006 113644260 -6100638 + L1M4 LINE L1 4554 4831 -1315 2204 93 14 7 chr13 113644358 113644649 -6100249 - AluSx SINE Alu -18 294 2 305 333 17 17 chr13 113645940 113646057 -6098841 - MIR SINE MIR -115 147 31 2295 119 0 0 chr13 113646194 113646530 -6098368 - AluSx SINE Alu 0 336 1 206 293 110 12 chr13 113646638 113646720 -6098178 + MIR SINE MIR 43 132 -130 320 326 179 0 chr13 113647328 113647546 -6097352 + L3b LINE CR1 1200 1456 -127 192 77 0 0 chr13 113648516 113648542 -6096356 + (TTTTTA)n Simple_repeat Simple_repeat 2 27 0 1164 309 143 17 chr13 113649160 113650151 -6094747 - L2 LINE L2 -12 3301 2188 59 46 0 0 chr13 113650467 113650554 -6094344 + AT_rich Low_complexity Low_complexity 1 87 0 5497 131 20 3 chr13 113650563 113651440 -6093458 - HSMAR2 DNA Mariner -410 892 1 31 44 0 0 chr13 113651957 113652002 -6092896 + AT_rich Low_complexity Low_complexity 1 45 0 187 298 32 75 chr13 113654627 113654721 -6090177 + MIR SINE MIR 102 191 -71 512 244 17 61 chr13 113654777 113654957 -6089941 + MER5B DNA MER1_type 5 176 -2 489 257 86 11 chr13 113657027 113657214 -6087684 + MIR SINE MIR 18 218 -44 267 320 29 19 chr13 113657584 113657687 -6087211 - L1ME3A LINE L1 -13 6157 6054 936 189 143 7 chr13 113657757 113658043 -6086855 + Charlie5 DNA MER1_type 2244 2568 -44 325 294 28 9 chr13 113658130 113658239 -6086659 - L1ME3A LINE L1 -327 5835 5725 317 216 52 31 chr13 113658560 113658657 -6086241 - MLT1J2-int LTR MaLR -1636 99 1 255 272 121 49 chr13 113658663 113658887 -6086011 - MLT1J2 LTR MaLR -6 444 205 313 348 72 29 chr13 113659235 113659442 -6085456 - HAL1 LINE L1 -1553 954 739 2362 164 21 16 chr13 113659807 113660239 -6084659 + Tigger2a DNA MER2_type 1 434 0 572 322 24 14 chr13 113660918 113661129 -6083769 - MIR SINE MIR -21 241 29 229 315 55 24 chr13 113661673 113661838 -6083060 + MER113 DNA MER1_type? 348 517 -4 3426 206 3 11 chr13 113661913 113662654 -6082244 - L1 LINE L1 -1683 4463 3729 2117 161 88 2 chr13 113662654 113663051 -6081847 + L1PA16 LINE L1 5735 6165 -1 1746 254 34 20 chr13 113663266 113663665 -6081233 - L1ME1 LINE L1 -29 6137 5745 372 22 0 0 chr13 113663665 113663710 -6081188 + (TG)n Simple_repeat Simple_repeat 2 46 0 1746 254 34 20 chr13 113663710 113663745 -6081153 - L1ME1 LINE L1 -421 5745 5712 1927 123 73 25 chr13 113663745 113664102 -6080796 + THE1C LTR MaLR 2 375 0 1746 254 34 20 chr13 113664102 113664257 -6080641 - L1ME1 LINE L1 -454 5712 5539 339 175 25 133 chr13 113664669 113664789 -6080109 - L1ME1 LINE L1 -709 5533 5427 20040 163 23 35 chr13 113664819 113669245 -6075653 - L1MA3 LINE L1 -2 7722 3245 2338 120 0 0 chr13 113669245 113669554 -6075344 - AluSg SINE Alu -1 309 1 20040 163 23 35 chr13 113669554 113671771 -6073127 - L1MA3 LINE L1 -4479 3245 1191 2131 120 0 3 chr13 113671771 113672090 -6072808 + AluSx SINE Alu 1 318 0 20040 163 23 35 chr13 113672090 113673252 -6071646 - L1MA3 LINE L1 -6533 1191 17 1324 252 51 15 chr13 113673271 113674002 -6070896 - L1ME1 LINE L1 -763 5421 4614 5531 111 15 2 chr13 113674323 113675910 -6068988 - L1PA13 LINE L1 0 6163 4533 6238 181 5 11 chr13 113675910 113677131 -6067767 + L1PA13 LINE L1 3289 4502 -1644 2140 124 0 19 chr13 113677223 113677538 -6067360 - AluSx SINE Alu -3 309 1 2487 57 0 25 chr13 113677955 113678271 -6066627 - AluY SINE Alu -3 308 1 780 213 8 92 chr13 113678903 113679142 -6065756 - MER20 DNA MER1_type 0 219 1 306 0 0 0 chr13 113680391 113680425 -6064473 + (TATG)n Simple_repeat Simple_repeat 2 35 0 309 100 0 0 chr13 113680428 113680468 -6064430 - AluSp/q SINE Alu -20 283 244 247 259 119 28 chr13 113681369 113681512 -6063386 - MER117 DNA MER1_type -40 157 2 214 374 55 0 chr13 113681513 113681604 -6063294 + MIR SINE MIR 54 149 -59 225 327 103 18 chr13 113682283 113682506 -6062392 + MIR SINE MIR 10 251 -11 424 252 32 24 chr13 113683118 113683241 -6061657 + MER5B DNA MER1_type 54 177 -1 367 242 255 7 chr13 113683243 113683392 -6061506 + MER5A DNA MER1_type 4 189 0 365 172 16 0 chr13 113683976 113684040 -6060858 - MER67D LTR ERV1 -4 510 446 1266 189 8 35 chr13 113684082 113684342 -6060556 + AluJo SINE Alu 42 294 -18 247 170 0 38 chr13 113684342 113684395 -6060503 - MER67D LTR ERV1 -79 435 385 513 105 0 35 chr13 113684403 113684489 -6060409 - AluSg/x SINE Alu -13 296 214 834 187 90 11 chr13 113684490 113684734 -6060164 - MER67D LTR ERV1 -132 382 139 185 343 29 39 chr13 113685487 113685691 -6059207 + L2 LINE L2 2452 2653 -661 468 168 23 69 chr13 113685741 113685815 -6059083 + L1MD1 LINE L1 6118 6185 -57 2456 61 15 12 chr13 113685815 113686145 -6058753 - L1PA7 LINE L1 0 6154 5824 468 168 23 69 chr13 113686145 113686201 -6058697 + L1MD1 LINE L1 6185 6242 0 2589 52 0 0 chr13 113687280 113687586 -6057312 + AluY SINE Alu 4 309 -2 284 0 28 0 chr13 113688722 113688758 -6056140 + (CA)n Simple_repeat Simple_repeat 2 38 0 213 243 47 0 chr13 113689082 113689152 -6055746 + MIR SINE MIR 84 156 -52 267 31 0 0 chr13 113689281 113689313 -6055585 + (CA)n Simple_repeat Simple_repeat 2 33 0 1542 119 23 15 chr13 113691128 113691389 -6053509 - L1PA6 LINE L1 -4 6150 5888 22 56 0 0 chr13 113691566 113691602 -6053296 + AT_rich Low_complexity Low_complexity 1 36 0 389 308 99 24 chr13 113691602 113692028 -6052870 - L1ME LINE L1 -407 5714 5257 614 163 41 61 chr13 113692177 113692324 -6052574 + MLT1F LTR MaLR 399 542 0 2166 129 73 9 chr13 113692444 113692786 -6052112 + THE1B LTR MaLR 1 364 0 435 186 12 12 chr13 113693000 113693086 -6051812 + MER74B LTR ERVL 58 143 -479 425 129 0 0 chr13 113693086 113693156 -6051742 - MSTB-int LTR MaLR -195 1456 1387 * 1017 163 6 0 chr13 113693154 113693332 -6051566 - MSTB-int LTR MaLR -1472 179 1 1772 200 109 3 chr13 113693332 113693717 -6051181 - MSTB LTR MaLR 0 426 1 23 0 0 0 chr13 113693763 113693786 -6051112 + AT_rich Low_complexity Low_complexity 1 23 0 1522 153 63 71 chr13 113695402 113695780 -6049118 + THE1C LTR MaLR 1 375 0 9517 115 81 9 chr13 113695781 113697255 -6047643 + THE1C-int LTR MaLR 2 1580 0 1583 149 72 72 chr13 113697255 113697630 -6047268 + THE1C LTR MaLR 1 375 0 1102 235 13 8 chr13 113698435 113698673 -6046225 - MER8 DNA MER2_type 0 239 1 219 164 36 18 chr13 113698775 113698830 -6046068 + (TA)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr13 113699619 113699641 -6045257 + AT_rich Low_complexity Low_complexity 1 22 0 2061 122 3 0 chr13 113700236 113700524 -6044374 + AluSg SINE Alu 12 300 -10 1108 112 0 0 chr13 113700525 113700677 -6044221 + AluSg/x SINE Alu 131 282 -28 233 83 0 0 chr13 113700706 113700742 -6044156 + LTR49 LTR ERV1 498 533 -62 2205 114 0 16 chr13 113700742 113701050 -6043848 + AluSq SINE Alu 1 303 -10 272 125 0 18 chr13 113702103 113702159 -6042739 + (TTTTC)n Simple_repeat Simple_repeat 1 55 0 293 182 45 0 chr13 113702166 113702232 -6042666 - AluJ/FRAM SINE Alu -3 299 231 2654 263 46 28 chr13 113703194 113703383 -6041515 + L1MEc LINE L1 34 218 -6178 2511 111 14 11 chr13 113703383 113703753 -6041145 - THE1C LTR MaLR 0 375 5 2654 263 46 28 chr13 113703753 113704435 -6040463 + L1MEc LINE L1 218 921 -5475 22 0 0 0 chr13 113704778 113704800 -6040098 + AT_rich Low_complexity Low_complexity 1 22 0 237 81 27 0 chr13 113706066 113706103 -6038795 + MADE1 DNA Mariner 9 46 -34 324 96 19 0 chr13 113706119 113706171 -6038727 - MADE1 DNA Mariner -26 54 2 1884 65 3 147 chr13 113706207 113706584 -6038314 + AluY SINE Alu 1 311 0 695 248 24 52 chr13 113708669 113708851 -6036047 + L1PA15 LINE L1 2825 2999 -3850 1348 227 37 48 chr13 113708851 113709226 -6035672 + MLT1A2 LTR MaLR 4 374 0 695 248 24 52 chr13 113709226 113709367 -6035531 + L1PA15 LINE L1 2999 3142 -3707 8359 188 135 67 chr13 113709372 113711166 -6033732 + L1MA2 LINE L1 15 1684 -5881 540 129 30 20 chr13 113711166 113711267 -6033631 + L1PB1 LINE L1 6048 6149 -2 8359 188 135 67 chr13 113711267 113711793 -6033105 + L1MA2 LINE L1 1684 2172 -5393 2162 121 0 0 chr13 113711793 113712082 -6032816 + AluSq SINE Alu 1 289 -24 186 43 0 0 chr13 113712085 113712108 -6032790 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8359 188 135 67 chr13 113712108 113712630 -6032268 + L1MA2 LINE L1 2173 2658 -4907 2230 103 7 20 chr13 113712630 113712932 -6031966 + AluSx SINE Alu 3 300 -12 8359 188 135 67 chr13 113712932 113713191 -6031707 + L1MA2 LINE L1 2658 3512 -4053 7661 169 16 13 chr13 113713186 113714772 -6030126 + L1MA2 LINE L1 5261 6851 -743 * 379 143 0 0 chr13 113714773 113714836 -6030062 + Alu SINE Alu 235 297 -5 5470 108 22 5 chr13 113714840 113715692 -6029206 + L1MA2 LINE L1 6856 7722 -1 622 232 76 14 chr13 113715764 113715975 -6028923 + L1PA15 LINE L1 3180 3403 -3446 1624 142 86 47 chr13 113715981 113716340 -6028558 + THE1C LTR MaLR 3 375 0 353 191 0 0 chr13 113716340 113716403 -6028495 + THE1C-int LTR MaLR 1 63 -1517 220 148 66 0 chr13 113716404 113716465 -6028433 + (TA)n Simple_repeat Simple_repeat 2 66 0 6451 37 1 1 chr13 113718259 113719036 -6025862 - L1PA3 LINE L1 -4 6151 5375 9351 28 2 3 chr13 113719036 113720931 -6023967 + L1PA4 LINE L1 4258 6152 -3 8088 212 20 16 chr13 113720932 113722850 -6022048 + L1PA15 LINE L1 3825 5751 -1098 5297 129 15 1 chr13 113722843 113723642 -6021256 + L1PA15 LINE L1 6055 6864 -4 * 3872 204 43 18 chr13 113724027 113725602 -6019296 - L1MB8 LINE L1 -5 6173 4558 1233 226 93 75 chr13 113725621 113725836 -6019062 - MLT1C LTR MaLR -10 457 247 186 103 0 0 chr13 113725836 113725865 -6019033 + (TG)n Simple_repeat Simple_repeat 1 29 0 1233 226 93 75 chr13 113725865 113726092 -6018806 - MLT1C LTR MaLR -220 247 7 1331 241 28 12 chr13 113726105 113726504 -6018394 - L1MB8 LINE L1 -1788 4358 3954 216 0 0 0 chr13 113726504 113726528 -6018370 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 468 179 0 0 chr13 113726530 113726625 -6018273 + MLT1A2 LTR MaLR 81 175 -215 264 100 0 0 chr13 113726634 113726674 -6018224 + (TC)n Simple_repeat Simple_repeat 1 40 0 774 189 92 61 chr13 113726675 113726871 -6018027 + MLT1A2 LTR MaLR 173 374 0 1786 233 12 8 chr13 113726871 113727365 -6017533 - L1MB8 LINE L1 -2281 3865 3370 944 207 0 6 chr13 113727379 113727543 -6017355 + MER44D DNA MER2_type 1 163 -542 865 168 90 26 chr13 113727548 113727703 -6017195 - FRAM SINE Alu -15 161 1 2224 199 60 45 chr13 113727703 113728241 -6016657 + MER44D DNA MER2_type 159 704 -1 2580 245 46 19 chr13 113728254 113729218 -6015680 - L1MB8 LINE L1 -2810 3336 2347 976 234 98 41 chr13 113729218 113729585 -6015313 - MLT1D LTR MaLR 0 505 118 790 237 26 53 chr13 113729609 113730011 -6014887 - L1M4c LINE L1 -3790 3167 2777 1130 199 46 35 chr13 113730052 113730313 -6014585 - AluJo SINE Alu -48 264 1 470 295 45 85 chr13 113730338 113730714 -6014184 - L1M4c LINE L1 -4321 2817 2457 1903 221 67 49 chr13 113730791 113731679 -6013219 - L1M4c LINE L1 -4444 2513 1572 2341 86 3 0 chr13 113732065 113732367 -6012531 + AluY SINE Alu 1 303 -8 183 214 169 22 chr13 113732373 113732462 -6012436 - MIR3 SINE MIR -26 182 81 646 253 35 0 chr13 113732954 113733128 -6011770 - MLT1D-int LTR MaLR -1146 225 46 1149 251 138 33 chr13 113733142 113733593 -6011305 - MLT1D LTR MaLR 0 505 8 557 257 141 16 chr13 113733599 113733848 -6011050 + L1MC4 LINE L1 7617 7896 -146 21 0 0 0 chr13 113734833 113734854 -6010044 + AT_rich Low_complexity Low_complexity 1 21 0 281 361 118 0 chr13 113734898 113735017 -6009881 - L2 LINE L2 0 3272 3140 6370 26 9 0 chr13 113735156 113735925 -6008973 + L1P LINE L1 3862 4637 -1509 2548 208 12 9 chr13 113736006 113736582 -6008316 - L1PB4 LINE L1 -3 6153 5576 263 337 158 23 chr13 113736592 113737028 -6007870 + L2 LINE L2 1522 2016 -1298 812 211 14 38 chr13 113737039 113737248 -6007650 + MLT1A2 LTR MaLR 171 374 0 21 57 0 0 chr13 113737910 113737945 -6006953 + AT_rich Low_complexity Low_complexity 1 35 0 234 300 69 88 chr13 113738539 113738699 -6006199 + L3 LINE CR1 330 486 -1091 1913 141 10 3 chr13 113739195 113739486 -6005412 + AluSx SINE Alu 1 293 -19 545 258 13 25 chr13 113740788 113740958 -6003940 + MIR SINE MIR 60 225 -37 291 120 0 0 chr13 113741498 113741548 -6003350 - MADE1 DNA Mariner 0 80 31 229 188 232 14 chr13 113741548 113741617 -6003281 - MIR SINE MIR -100 162 79 309 185 0 0 chr13 113742372 113742437 -6002461 + GA-rich Low_complexity Low_complexity 3 67 0 682 265 129 73 chr13 113742631 113743189 -6001709 - L1ME4a LINE L1 0 6121 5533 324 302 65 65 chr13 113743314 113743559 -6001339 + L1 LINE L1 2971 3215 -2931 1649 179 0 7 chr13 113743627 113743951 -6000947 + AluSx SINE Alu 5 326 0 429 307 154 38 chr13 113744216 113744605 -6000293 + L1 LINE L1 3734 4195 -1951 213 39 0 0 chr13 113744605 113744631 -6000267 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 429 307 154 38 chr13 113744631 113744740 -6000158 + L1 LINE L1 4195 4290 -1856 465 233 27 59 chr13 113744845 113745064 -5999834 + L1PA5 LINE L1 5644 5855 -299 * 980 169 48 35 chr13 113744879 113745382 -5999516 + L1MA8 LINE L1 5667 6264 -27 2712 133 26 52 chr13 113745382 113745953 -5998945 - L1MA4 LINE L1 0 6300 5745 1786 164 14 3 chr13 113746081 113746373 -5998525 - AluJb SINE Alu -17 295 1 22 0 0 0 chr13 113746384 113746406 -5998492 + AT_rich Low_complexity Low_complexity 1 22 0 204 255 0 0 chr13 113746819 113746870 -5998028 + L2 LINE L2 3262 3312 -1 405 319 25 0 chr13 113747478 113747638 -5997260 - MIR SINE MIR -31 231 68 2218 103 140 13 chr13 113748631 113749010 -5995888 - MSTA LTR MaLR 0 428 2 228 200 93 53 chr13 113749301 113749376 -5995522 + MLT1H LTR MaLR 223 300 -249 415 281 58 0 chr13 113749405 113749544 -5995354 + MLT1H LTR MaLR 389 535 -14 280 312 147 0 chr13 113749679 113749788 -5995110 + L2 LINE L2 3189 3313 0 1165 234 46 24 chr13 113751515 113751844 -5993054 - LTR40b LTR ERVL 0 462 127 974 213 40 49 chr13 113752064 113752462 -5992436 - MLT1C LTR MaLR -8 459 3 1954 168 3 3 chr13 113753637 113753934 -5990964 - AluSx SINE Alu -15 297 1 2187 106 3 3 chr13 113754157 113754450 -5990448 - AluSg SINE Alu -17 293 1 1937 165 15 45 chr13 113754837 113755236 -5989662 - MLT1B LTR MaLR -3 387 1 1299 190 90 26 chr13 113755639 113755950 -5988948 + MER44D DNA MER2_type 1 601 -8 201 279 82 21 chr13 113755969 113756066 -5988832 - L2 LINE L2 -372 2900 2799 23 33 0 0 chr13 113756156 113756186 -5988712 + AT_rich Low_complexity Low_complexity 1 30 0 948 221 194 76 chr13 113756289 113756774 -5988124 - MLT1F1 LTR MaLR 0 567 1 1089 202 174 22 chr13 113756775 113757092 -5987806 + MLT1A1 LTR MaLR 1 365 0 196 253 187 0 chr13 113758281 113758356 -5986542 - MIR3 SINE MIR -2 206 118 800 237 29 0 chr13 113758363 113758536 -5986362 + MER45A DNA AcHobo 1 178 0 391 317 77 0 chr13 113758631 113758814 -5986084 + MIR SINE MIR 61 257 -5 198 103 0 0 chr13 113758815 113758844 -5986054 + (TTG)n Simple_repeat Simple_repeat 1 29 0 264 327 112 25 chr13 113760951 113761272 -5983626 + L3 LINE CR1 1119 1467 -110 881 242 36 40 chr13 113762180 113762432 -5982466 - MER58 DNA MER1_type -88 253 3 2177 80 10 0 chr13 113762565 113762865 -5982033 + L1PA4 LINE L1 5853 6155 0 21 0 0 0 chr13 113763547 113763568 -5981330 + AT_rich Low_complexity Low_complexity 1 21 0 2292 134 24 16 chr13 113764451 113764823 -5980075 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr13 113765673 113765704 -5979194 + AT_rich Low_complexity Low_complexity 1 31 0 228 219 0 0 chr13 113766754 113766795 -5978103 + (TG)n Simple_repeat Simple_repeat 2 42 0 293 240 116 27 chr13 113766795 113766941 -5977957 + L1ME LINE L1 5595 5753 -368 2562 7 0 3 chr13 113767114 113767430 -5977468 - AluYa5 SINE Alu 0 315 1 1479 227 134 22 chr13 113767836 113768390 -5976508 + L1MC4 LINE L1 6468 7083 -959 743 270 80 0 chr13 113768392 113768705 -5976193 + L1MC4 LINE L1 7166 7536 -304 25 51 0 0 chr13 113768814 113768853 -5976045 + AT_rich Low_complexity Low_complexity 1 39 0 426 207 52 17 chr13 113769255 113769429 -5975469 + (TA)n Simple_repeat Simple_repeat 1 180 0 1547 157 0 90 chr13 113769439 113769662 -5975236 + MER7A DNA MER2_type 1 242 -2796 207 0 0 0 chr13 113769662 113769685 -5975213 + (TG)n Simple_repeat Simple_repeat 1 23 0 1547 157 0 90 chr13 113769685 113769696 -5975202 + MER7A DNA MER2_type 242 252 -2786 1705 117 4 33 chr13 113769696 113769970 -5974928 - AluSx SINE Alu -46 266 1 1547 157 0 90 chr13 113769970 113770091 -5974807 + MER7A DNA MER2_type 252 323 -23 309 291 96 101 chr13 113770819 113771266 -5973632 - L1M2 LINE L1 -5842 1007 563 265 393 7 21 chr13 113773445 113773590 -5971308 - MIR3 SINE MIR -3 205 63 182 206 0 88 chr13 113774033 113774101 -5970797 - MIR SINE MIR -43 219 158 21 0 0 0 chr13 113774438 113774459 -5970439 + AT_rich Low_complexity Low_complexity 1 21 0 231 217 72 14 chr13 113774599 113774668 -5970230 + MER5A DNA MER1_type 61 133 -56 2369 76 20 0 chr13 113775453 113775755 -5969143 - AluSg SINE Alu 0 310 3 327 344 32 8 chr13 113776677 113776802 -5968096 - MIR SINE MIR -58 150 23 423 294 62 21 chr13 113776882 113777076 -5967822 + MER58C DNA MER1_type 14 215 0 2186 101 0 0 chr13 113777184 113777470 -5967428 + AluY SINE Alu 24 309 -2 321 345 49 14 chr13 113778769 113778911 -5965987 + L3 LINE CR1 34 180 -1397 21 36 0 0 chr13 113778958 113778986 -5965912 + AT_rich Low_complexity Low_complexity 1 28 0 212 287 23 46 chr13 113779112 113779199 -5965699 + MIR3 SINE MIR 123 207 -1 6166 199 23 19 chr13 113779227 113779339 -5965559 - L1MB2 LINE L1 0 6407 6297 261 0 0 0 chr13 113779339 113779368 -5965530 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2106 114 0 17 chr13 113779368 113779657 -5965241 - AluSx SINE Alu -28 284 1 6166 199 23 19 chr13 113779657 113779754 -5965144 - L1MB2 LINE L1 -110 6297 6202 2295 103 0 6 chr13 113779754 113780065 -5964833 - AluSc SINE Alu 0 309 1 6166 199 23 19 chr13 113780065 113780559 -5964339 - L1MB2 LINE L1 -205 6202 5711 180 77 0 0 chr13 113780559 113780585 -5964313 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6166 199 23 19 chr13 113780585 113781791 -5963107 - L1MB2 LINE L1 -696 5711 4481 210 71 0 0 chr13 113781791 113781819 -5963079 + (TG)n Simple_repeat Simple_repeat 1 28 0 6166 199 23 19 chr13 113781819 113782288 -5962610 - L1MB2 LINE L1 -1926 4481 4015 251 239 0 0 chr13 113782309 113782355 -5962543 + Tigger5 DNA MER2_type 143 188 -2135 * 344 181 111 0 chr13 113782354 113782426 -5962472 + Tigger5 DNA MER2_type 2244 2323 0 2368 251 37 56 chr13 113782426 113783611 -5961287 - L1MB2 LINE L1 -4520 1793 777 279 308 28 76 chr13 113783692 113783903 -5960995 - L1M3de LINE L1 -5192 1461 1261 315 329 35 26 chr13 113783909 113784137 -5960761 - L1M3de LINE L1 -5907 756 527 1090 62 0 0 chr13 113784896 113785041 -5959857 + L1PA4 LINE L1 6011 6155 0 2351 77 0 10 chr13 113785333 113785645 -5959253 - AluY SINE Alu 0 311 3 28 0 0 0 chr13 113785652 113785680 -5959218 + AT_rich Low_complexity Low_complexity 1 28 0 39288 27 18 1 chr13 113785703 113791726 -5953172 - L1HS LINE L1 0 6155 8 1436 216 6 47 chr13 113792115 113792151 -5952747 - AluJo SINE Alu -5 307 271 234 0 0 0 chr13 113792151 113792177 -5952721 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1436 216 6 47 chr13 113792177 113792460 -5952438 - AluJo SINE Alu -41 271 1 484 324 22 0 chr13 113792589 113792771 -5952127 + L3 LINE CR1 743 928 -649 1425 204 56 9 chr13 113792976 113793315 -5951583 - MLT1A1 LTR MaLR -10 355 1 228 279 12 23 chr13 113794602 113794688 -5950210 + CT-rich Low_complexity Low_complexity 4 88 0 309 26 0 0 chr13 113794857 113794895 -5950003 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 301 78 59 chr13 113795379 113795532 -5949366 + MIR SINE MIR 81 236 -26 231 151 21 54 chr13 113796212 113796305 -5948593 + CT-rich Low_complexity Low_complexity 3 92 0 1596 165 82 120 chr13 113797687 113797986 -5946912 - MLT1C LTR MaLR 0 467 191 282 87 0 0 chr13 113797986 113798032 -5946866 + (TG)n Simple_repeat Simple_repeat 2 47 0 1596 165 82 120 chr13 113798032 113798217 -5946681 - MLT1C LTR MaLR -276 191 1 355 272 110 0 chr13 113798873 113799009 -5945889 - L3 LINE CR1 -2 1575 1425 2353 151 0 46 chr13 113799047 113799248 -5945650 + MSTA LTR MaLR 1 173 -255 1912 116 10 33 chr13 113799248 113799575 -5945323 + AluSx SINE Alu 1 312 0 2353 151 0 46 chr13 113799575 113799810 -5945088 + MSTA LTR MaLR 173 417 -11 606 260 121 31 chr13 113801731 113802054 -5942844 - L1MC4 LINE L1 -1 8041 7690 379 144 10 106 chr13 113802097 113802201 -5942697 - L1MC4 LINE L1 -1056 6986 6893 2019 154 0 50 chr13 113803078 113803239 -5941659 + MLT1A1 LTR MaLR 1 168 -197 2100 127 7 0 chr13 113803239 113803544 -5941354 + AluSx SINE Alu 1 307 0 2019 154 0 50 chr13 113803544 113803763 -5941135 + MLT1A1 LTR MaLR 168 363 -2 349 297 62 51 chr13 113804096 113804466 -5940432 + L1M4 LINE L1 3074 3447 -2699 24 0 0 0 chr13 113804479 113804503 -5940395 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr13 113804516 113804537 -5940361 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 396 0 0 0 chr13 113804540 113804584 -5940314 + (TG)n Simple_repeat Simple_repeat 1 44 0 2045 107 4 0 chr13 113804599 113804904 -5939994 - AluSq SINE Alu 0 306 1 236 322 57 31 chr13 113805644 113806101 -5938797 + L1M4 LINE L1 4182 4650 -1496 280 277 61 20 chr13 113806104 113806252 -5938646 + L1MEd LINE L1 12 165 -5954 2400 65 27 0 chr13 113806680 113806973 -5937925 - AluY SINE Alu -10 301 1 287 320 72 26 chr13 113807176 113807329 -5937569 - MER5B DNA MER1_type -16 162 3 2115 114 7 29 chr13 113808309 113808615 -5936283 + AluSx SINE Alu 1 299 -13 320 273 224 12 chr13 113808689 113808854 -5936044 + MER63A DNA MER1_type 8 207 -3 930 279 66 7 chr13 113809120 113809559 -5935339 + L2 LINE L2 2772 3241 -72 235 287 115 11 chr13 113809769 113809856 -5935042 + L2 LINE L2 3177 3272 0 565 243 49 32 chr13 113810028 113810275 -5934623 - L1ME3 LINE L1 -259 5903 5653 244 215 65 0 chr13 113810842 113810935 -5933963 - L1ME3 LINE L1 -2172 3974 3876 2049 137 10 81 chr13 113810985 113811395 -5933503 + L1PA15 LINE L1 5777 6157 -8 2388 118 14 6 chr13 113811444 113811808 -5933090 - L1PA10 LINE L1 -13 6155 5789 1650 164 0 0 chr13 113811808 113812112 -5932786 + L1P LINE L1 4690 4993 -1153 1584 168 4 15 chr13 113812916 113813190 -5931708 - AluJo SINE Alu -5 307 37 6827 65 9 12 chr13 113813372 113814289 -5930609 + L1PA8 LINE L1 5259 6172 0 363 319 223 20 chr13 113814462 113814816 -5930082 - HAL1b LINE L1 -415 933 508 436 301 49 0 chr13 113815965 113816088 -5928810 - L2 LINE L2 -2 3311 3183 3090 155 0 52 chr13 113816254 113816810 -5928088 + MER1A DNA MER1_type 1 527 0 21 36 0 0 chr13 113817197 113817225 -5927673 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr13 113817621 113817666 -5927232 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr13 113818245 113818275 -5926623 + AT_rich Low_complexity Low_complexity 1 30 0 294 159 188 14 chr13 113818283 113818352 -5926546 - AluJb SINE Alu -178 124 44 1399 173 19 0 chr13 113819057 113819323 -5925575 - L1MB7 LINE L1 -16 6168 5898 493 67 13 0 chr13 113820115 113820190 -5924708 + L1PA6 LINE L1 6079 6154 0 237 349 71 24 chr13 113820643 113820769 -5924129 - L2 LINE L2 -42 3230 3099 211 358 57 49 chr13 113821543 113821789 -5923109 - L2 LINE L2 -630 2684 2437 1859 231 61 39 chr13 113822160 113822392 -5922506 - MLT1E LTR MaLR 0 593 368 438 96 96 0 chr13 113822392 113822465 -5922433 - MADE1 DNA Mariner 0 80 1 1859 231 61 39 chr13 113822465 113822803 -5922095 - MLT1E LTR MaLR -225 368 10 302 291 76 47 chr13 113822850 113823022 -5921876 - L2 LINE L2 -1403 1911 1735 294 283 33 22 chr13 113823034 113823126 -5921772 + L2 LINE L2 3174 3266 -6 586 307 89 39 chr13 113823317 113823731 -5921167 + L2 LINE L2 1375 1809 -1505 393 118 49 10 chr13 113825504 113825606 -5919292 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 489 128 39 32 chr13 113825651 113825807 -5919091 + (TCTA)n Simple_repeat Simple_repeat 4 160 0 672 304 78 37 chr13 113826189 113827081 -5917817 - HAL1 LINE L1 -836 1671 743 363 277 57 13 chr13 113827388 113827541 -5917357 + MER5A DNA MER1_type 1 156 -22 3873 188 31 18 chr13 113828140 113829121 -5915777 - L1MB7 LINE L1 -20 6164 5167 21 71 0 0 chr13 113829862 113829904 -5914994 + AT_rich Low_complexity Low_complexity 1 42 0 257 234 21 0 chr13 113830145 113830192 -5914706 + MIR SINE MIR 23 70 -192 404 163 12 0 chr13 113831797 113831883 -5913015 + CT-rich Low_complexity Low_complexity 5 91 0 350 317 56 21 chr13 113833227 113833369 -5911529 + L2 LINE L2 3143 3289 -24 986 317 157 47 chr13 113833741 113834617 -5910281 - L2 LINE L2 -345 2969 2191 2152 109 3 0 chr13 113834617 113834944 -5909954 + AluSx SINE Alu 1 328 0 986 317 157 47 chr13 113834944 113835204 -5909694 - L2 LINE L2 -1123 2191 1961 1710 182 14 3 chr13 113835204 113835495 -5909403 + AluJo SINE Alu 1 294 -18 986 317 157 47 chr13 113835495 113835799 -5909099 - L2 LINE L2 -1353 1961 1368 570 273 112 46 chr13 113836136 113836396 -5908502 + MER77 LTR ERV1 238 514 -91 790 154 6 28 chr13 113837462 113837644 -5907254 + CT-rich Low_complexity Low_complexity 1 178 0 686 194 12 6 chr13 113837659 113837848 -5907050 + CT-rich Low_complexity Low_complexity 1 190 0 183 42 0 0 chr13 113837967 113837991 -5906907 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 307 305 176 21 chr13 113837992 113838179 -5906719 - MLT1J LTR MaLR -40 471 256 288 222 0 0 chr13 113838522 113838594 -5906304 + (TG)n Simple_repeat Simple_repeat 1 72 0 405 315 8 23 chr13 113838986 113839116 -5905782 + MIR SINE MIR 25 152 -110 21 0 0 0 chr13 113839323 113839344 -5905554 + AT_rich Low_complexity Low_complexity 1 21 0 4755 153 18 54 chr13 113839502 113840658 -5904240 - L1PB4 LINE L1 0 6156 5039 269 301 32 93 chr13 113840898 113841114 -5903784 - L2 LINE L2 -1359 1955 1753 210 307 120 0 chr13 113841256 113841331 -5903567 + L2 LINE L2 3229 3312 -1 355 244 44 0 chr13 113843788 113843948 -5900950 + (TA)n Simple_repeat Simple_repeat 1 167 0 2099 104 10 8 chr13 113844195 113844513 -5900385 + L1PA13 LINE L1 5343 5660 -505 2188 152 16 30 chr13 113844640 113845069 -5899829 + L1PA13 LINE L1 5734 6156 -7 45 87 0 0 chr13 113845410 113845525 -5899373 + AT_rich Low_complexity Low_complexity 1 115 0 2439 62 7 0 chr13 113845950 113846259 -5898639 + AluY SINE Alu 1 311 0 204 40 0 0 chr13 113846320 113846345 -5898553 + (T)n Simple_repeat Simple_repeat 1 25 0 2358 92 3 0 chr13 113846371 113846677 -5898221 + AluSp SINE Alu 1 307 -6 422 280 8 0 chr13 113896919 113897051 -5847847 + MLT1A2 LTR MaLR 242 374 0 2008 156 24 14 chr13 113898668 113899039 -5845859 - THE1C LTR MaLR 0 375 1 243 279 116 0 chr13 113899559 113899645 -5845253 + L2 LINE L2 3137 3232 -40 244 261 0 0 chr13 113899661 113899726 -5845172 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 2281 133 11 16 chr13 113900160 113900537 -5844361 + THE1C LTR MaLR 1 375 0 8771 136 49 15 chr13 113900537 113902065 -5842833 + THE1C-int LTR MaLR 1 1580 0 483 123 12 0 chr13 113902250 113902331 -5842567 + THE1C LTR MaLR 294 375 0 236 154 19 0 chr13 113903230 113903282 -5841616 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1989 132 7 4 chr13 113903325 113903606 -5841292 - AluSx SINE Alu -20 292 11 21 36 0 0 chr13 113903652 113903680 -5841218 + AT_rich Low_complexity Low_complexity 1 28 0 335 264 74 8 chr13 113904048 113904169 -5840729 + L2 LINE L2 3185 3313 0 30 0 0 0 chr13 113904332 113904362 -5840536 + AT_rich Low_complexity Low_complexity 1 30 0 239 300 33 42 chr13 113904799 113904919 -5839979 + MIR SINE MIR 108 226 -36 485 45 0 0 chr13 113906357 113906424 -5838474 - AluY SINE Alu -2 308 242 257 312 167 7 chr13 113906896 113907034 -5837864 - L2 LINE L2 -18 3295 3136 23 33 0 0 chr13 113907543 113907573 -5837325 + AT_rich Low_complexity Low_complexity 1 30 0 4709 227 54 21 chr13 113907870 113910180 -5834718 + L1MB7 LINE L1 3603 5986 -198 183 351 90 24 chr13 113911253 113911464 -5833434 + L2 LINE L2 2670 2894 -420 535 214 60 33 chr13 113911545 113911727 -5833171 - MER5A DNA MER1_type 0 189 3 181 293 101 20 chr13 113911929 113912028 -5832870 + L2 LINE L2 3189 3295 -18 361 292 97 15 chr13 113912474 113912669 -5832229 + L2 LINE L2 2474 2684 -630 503 259 86 56 chr13 113913330 113913562 -5831336 - L1ME3 LINE L1 -14 6148 5910 650 269 74 5 chr13 113914486 113914702 -5830196 + MIR SINE MIR 28 258 -4 189 318 30 0 chr13 113915720 113915786 -5829112 + L2 LINE L2 3197 3264 -49 3242 147 27 86 chr13 113915812 113916559 -5828339 + MER44D DNA MER2_type 3 705 0 278 310 21 28 chr13 113917092 113917234 -5827664 + GA-rich Low_complexity Low_complexity 1 141 0 378 0 0 0 chr13 113919277 113919319 -5825579 + (TG)n Simple_repeat Simple_repeat 2 43 0 2052 141 13 3 chr13 113921018 113921324 -5823574 + AluSx SINE Alu 1 309 -3 666 101 57 0 chr13 113921324 113921482 -5823416 + (TA)n Simple_repeat Simple_repeat 1 167 0 181 304 22 54 chr13 113922660 113922752 -5822146 + L2 LINE L2 3225 3313 0 337 292 97 13 chr13 113922918 113923072 -5821826 - MIR SINE MIR -56 206 40 2335 105 0 0 chr13 113926289 113926593 -5818305 + AluSq SINE Alu 1 304 -9 2038 164 57 31 chr13 113927672 113928190 -5816708 - MLT2A2 LTR ERVL 0 554 1 195 309 85 85 chr13 113928238 113928626 -5816272 + L2 LINE L2 852 1239 -2075 383 291 227 45 chr13 113928780 113929409 -5815489 + L2 LINE L2 1524 2267 -1047 2299 91 10 0 chr13 113929999 113930295 -5814603 - AluSx SINE Alu -13 299 1 365 347 72 11 chr13 113930573 113930838 -5814060 - L1M4 LINE L1 -1258 4888 4608 2234 99 31 0 chr13 113930842 113930865 -5814033 - AluSc SINE Alu -7 302 281 351 0 0 0 chr13 113930865 113930904 -5813994 + (TG)n Simple_repeat Simple_repeat 2 40 0 2234 99 31 0 chr13 113930904 113931173 -5813725 - AluSc SINE Alu -28 281 1 389 266 71 0 chr13 113931333 113931517 -5813381 + Tigger8 DNA MER2_type 200 396 -270 1906 136 0 0 chr13 113932199 113932464 -5812434 + AluSp SINE Alu 1 265 -48 225 0 0 0 chr13 113932475 113932500 -5812398 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 738 311 43 40 chr13 113932503 113932850 -5812048 - L2 LINE L2 -62 3251 2904 329 362 119 4 chr13 113933689 113933924 -5810974 - L2 LINE L2 -558 2756 2495 190 277 31 15 chr13 113934088 113934153 -5810745 + L2 LINE L2 2317 2382 -932 261 350 154 34 chr13 113934169 113934721 -5810177 - L2 LINE L2 -501 2813 2196 211 252 69 96 chr13 113936578 113936742 -5808156 + MIR SINE MIR 32 187 -62 1999 98 90 0 chr13 113937047 113937324 -5807574 - AluSx SINE Alu -10 302 1 1948 249 32 7 chr13 113937608 113938171 -5806727 - L1ME1 LINE L1 -5 6161 5585 750 224 7 70 chr13 113938177 113938449 -5806449 - L1ME1 LINE L1 -287 5879 5625 576 42 0 0 chr13 113938950 113939021 -5805877 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 258 266 0 0 chr13 113942477 113942541 -5802357 + (TGAA)n Simple_repeat Simple_repeat 1 64 0 270 368 9 0 chr13 113942541 113942647 -5802251 - L2 LINE L2 -25 3288 3182 42 36 0 0 chr13 113943162 113943218 -5801680 + AT_rich Low_complexity Low_complexity 1 56 0 287 263 32 0 chr13 113943325 113943420 -5801478 - MLT1K LTR MaLR 0 588 491 267 140 0 0 chr13 113943511 113943561 -5801337 + (TC)n Simple_repeat Simple_repeat 1 50 0 1529 57 0 0 chr13 113943648 113943841 -5801057 + L1PA4 LINE L1 5958 6150 -5 36 62 0 0 chr13 113944699 113944763 -5800135 + AT_rich Low_complexity Low_complexity 1 64 0 321 320 238 0 chr13 113945536 113945717 -5799181 - MIR SINE MIR -31 231 8 291 191 0 0 chr13 113946729 113946792 -5798106 + (TG)n Simple_repeat Simple_repeat 2 64 0 4194 190 27 6 chr13 113946996 113948103 -5796795 - L1MB2 LINE L1 -11 6876 5751 318 216 0 0 chr13 113948365 113948439 -5796459 + (TA)n Simple_repeat Simple_repeat 2 75 0 513 255 117 68 chr13 113948446 113948815 -5796083 - LTR16A1 LTR ERVL -5 452 103 2216 117 20 8 chr13 113948815 113949166 -5795732 + THE1A LTR MaLR 1 355 0 11502 103 10 1 chr13 113949166 113950732 -5794166 + THE1A-int LTR MaLR 1 1580 0 2321 116 11 6 chr13 113950732 113951085 -5793813 + THE1A LTR MaLR 1 355 0 513 255 117 68 chr13 113951085 113951141 -5793757 - LTR16A1 LTR ERVL -353 104 4 315 286 0 8 chr13 113951810 113951943 -5792955 - L1MB2 LINE L1 -1246 5616 5485 320 316 85 48 chr13 113952257 113952529 -5792369 - L1MB2 LINE L1 -1800 5062 4781 272 314 52 33 chr13 113952579 113952945 -5791953 - L1MB2 LINE L1 -2373 4489 4117 265 288 82 37 chr13 113953015 113953048 -5791850 - L1MB2 LINE L1 -3016 3846 3816 297 0 0 0 chr13 113953048 113953081 -5791817 + (TG)n Simple_repeat Simple_repeat 2 34 0 265 288 82 37 chr13 113953081 113953512 -5791386 - L1MB2 LINE L1 -3046 3816 3361 488 161 11 43 chr13 113953812 113953998 -5790900 + (TA)n Simple_repeat Simple_repeat 1 180 0 203 311 68 23 chr13 113954073 113954205 -5790693 + L2 LINE L2 2593 2730 -584 278 273 15 0 chr13 113954409 113954475 -5790423 - L2 LINE L2 -49 3264 3198 1041 170 0 0 chr13 113954577 113954736 -5790162 + FRAM SINE Alu 1 159 -7 9728 189 121 6 chr13 113954900 113957891 -5787007 - L1MB2 LINE L1 -3502 3360 6 223 300 84 28 chr13 113958990 113959099 -5785799 + MIR SINE MIR 74 187 -57 1248 201 41 30 chr13 113959733 113959878 -5785020 - AluJo SINE Alu -40 272 121 230 0 33 0 chr13 113959878 113959908 -5784990 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1248 201 41 30 chr13 113959908 113960030 -5784868 - AluJo SINE Alu -191 121 2 678 146 0 49 chr13 113961097 113961220 -5783678 - FLAM_C SINE Alu -4 139 23 241 178 189 56 chr13 113961627 113961717 -5783181 + MER46C DNA MER2_type 5 106 -232 273 312 26 0 chr13 113961983 113962060 -5782838 - MIR3 SINE MIR -16 192 114 1421 212 36 7 chr13 113962384 113962662 -5782236 + AluJo SINE Alu 2 287 -25 477 285 15 0 chr13 113962896 113963026 -5781872 - L2 LINE L2 -696 2618 2487 632 245 109 98 chr13 113963028 113963404 -5781494 - MLT1D LTR MaLR 0 505 126 1369 288 140 4 chr13 113963518 113964167 -5780731 - L2 LINE L2 -834 2480 1653 1011 57 108 0 chr13 113964167 113964325 -5780573 - L1P LINE L1 -743 5429 5255 3148 60 0 0 chr13 113964325 113964721 -5780177 + L1PA8 LINE L1 5774 6170 -2 279 336 22 15 chr13 113964721 113964858 -5780040 - L2 LINE L2 -1653 1661 1524 421 341 34 23 chr13 113964864 113965040 -5779858 - MER5B DNA MER1_type 0 178 1 253 324 147 12 chr13 113965051 113965221 -5779677 - L2 LINE L2 -1854 1460 1268 201 240 0 0 chr13 113965873 113965923 -5778975 + (CA)n Simple_repeat Simple_repeat 1 50 0 872 193 40 7 chr13 113966276 113966595 -5778303 - MLT1A2 LTR MaLR -8 366 4 197 287 85 70 chr13 113968431 113968560 -5776338 + L2 LINE L2 2342 2472 -842 253 295 148 38 chr13 113970450 113970660 -5774238 + MIR SINE MIR 30 262 0 287 229 21 52 chr13 113970971 113970993 -5773905 - MIR SINE MIR -16 246 225 315 0 0 0 chr13 113970993 113971028 -5773870 + (TG)n Simple_repeat Simple_repeat 1 35 0 287 229 21 52 chr13 113971028 113971101 -5773797 - MIR SINE MIR -37 225 154 377 197 107 52 chr13 113971136 113971369 -5773529 + MLT1C LTR MaLR 67 312 -155 331 267 13 0 chr13 113971686 113971761 -5773137 - L2 LINE L2 0 3313 3238 265 101 0 174 chr13 113971883 113971934 -5772964 - MLT2D LTR ERVL 0 414 390 207 0 0 0 chr13 113971934 113971957 -5772941 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 101 0 174 chr13 113971957 113971974 -5772924 - MLT2D LTR ERVL -24 390 372 231 238 60 0 chr13 113971985 113972069 -5772829 + L1MC4 LINE L1 6614 6702 -1340 269 231 0 11 chr13 113972072 113972163 -5772735 + (TA)n Simple_repeat Simple_repeat 2 91 0 696 298 63 25 chr13 113973035 113973401 -5771497 + L2 LINE L2 1737 2116 -1198 1401 222 9 24 chr13 113973410 113973748 -5771150 - MLT1A1 LTR MaLR 0 365 33 817 280 134 16 chr13 113973751 113974123 -5770775 + L2 LINE L2 2898 3313 0 314 342 9 9 chr13 113974174 113974285 -5770613 + L2 LINE L2 2564 2674 -640 215 30 0 30 chr13 113974341 113974374 -5770524 + (TAA)n Simple_repeat Simple_repeat 2 33 0 212 331 41 25 chr13 113976053 113976174 -5768724 - L2 LINE L2 0 3272 3150 609 217 35 0 chr13 113976540 113976683 -5768215 + MER5A DNA MER1_type 1 148 -41 280 340 49 30 chr13 113976897 113976935 -5767963 + L2 LINE L2 2889 2925 -347 4187 127 45 1 chr13 113976935 113977620 -5767278 - LTR62 LTR ERVK -2 717 3 280 340 49 30 chr13 113977620 113977784 -5767114 + L2 LINE L2 2925 3095 -177 186 43 0 0 chr13 113978036 113978059 -5766839 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2276 89 7 0 chr13 113978502 113978794 -5766104 - AluSc SINE Alu -15 294 1 254 283 22 0 chr13 113978941 113979033 -5765865 - LTR16B LTR ERVL 0 464 371 2183 205 140 52 chr13 113979124 113979646 -5765252 + MER21B LTR ERV1 15 628 -235 2419 85 0 0 chr13 113979646 113979941 -5764957 - AluSc SINE Alu -14 295 1 2183 205 140 52 chr13 113979941 113980190 -5764708 + MER21B LTR ERV1 628 854 -9 1424 191 40 42 chr13 113980278 113980656 -5764242 - MLT1B LTR MaLR -10 380 4 482 258 85 42 chr13 113980668 113980951 -5763947 - LTR16B LTR ERVL -160 304 10 230 373 17 0 chr13 113982204 113982322 -5762576 + L3 LINE CR1 709 828 -749 274 321 151 56 chr13 113982367 113982672 -5762226 + L3 LINE CR1 946 1279 -298 241 306 82 12 chr13 113983491 113983576 -5761322 + MIR SINE MIR 95 185 -77 22 35 0 0 chr13 113983655 113983684 -5761214 + AT_rich Low_complexity Low_complexity 1 29 0 213 150 25 0 chr13 113984865 113984905 -5759993 + T-rich Low_complexity Low_complexity 3 43 0 260 148 16 0 chr13 113986036 113986097 -5758801 + GA-rich Low_complexity Low_complexity 1 62 0 698 178 7 0 chr13 113986148 113986283 -5758615 - FRAM SINE Alu -1 175 40 1807 219 39 22 chr13 113987843 113988331 -5756567 - L1MB5 LINE L1 -13 6161 5666 2998 116 11 0 chr13 113988332 113988883 -5756015 - L1PA13 LINE L1 -4 6159 5434 772 227 6 5 chr13 113988882 113989101 -5755797 - L1MB5 LINE L1 -498 5676 5462 * 2549 204 45 36 chr13 113989110 113989451 -5755447 - L1MB5 LINE L1 -751 5395 5058 2375 92 3 0 chr13 113989451 113989754 -5755144 + AluSp SINE Alu 1 304 -9 2549 204 45 36 chr13 113989754 113990208 -5754690 - L1MB5 LINE L1 -1088 5058 4593 267 228 120 11 chr13 113990474 113990566 -5754332 + L1ME3 LINE L1 3814 3915 -2231 2104 253 26 24 chr13 113990715 113991378 -5753520 + L1ME3 LINE L1 5499 6162 0 369 320 93 10 chr13 113991379 113991573 -5753325 - L1M4 LINE L1 -1242 4904 4695 21 0 0 0 chr13 113991595 113991616 -5753282 + AT_rich Low_complexity Low_complexity 1 21 0 2242 135 0 0 chr13 113992331 113992643 -5752255 - AluSx SINE Alu 0 312 1 231 266 214 28 chr13 113993474 113993616 -5751282 - MIR SINE MIR -56 206 33 246 32 0 0 chr13 113993687 113993718 -5751180 + (TC)n Simple_repeat Simple_repeat 2 32 0 487 194 19 12 chr13 113993718 113993878 -5751020 + (TA)n Simple_repeat Simple_repeat 2 162 0 4873 243 72 31 chr13 113994551 113994671 -5750227 + L1M4 LINE L1 21 135 -6509 2339 112 3 0 chr13 113994671 113994983 -5749915 + AluSq SINE Alu 1 313 0 4873 243 72 31 chr13 113994983 113995880 -5749018 + L1M4 LINE L1 135 994 -5650 1398 200 97 32 chr13 113995880 113996250 -5748648 + MSTD LTR MaLR 1 394 -2 4873 243 72 31 chr13 113996250 113998403 -5746495 + L1M4 LINE L1 994 3363 -3281 1540 161 16 83 chr13 113998405 113998778 -5746120 + MLT1B LTR MaLR 1 348 -42 521 217 14 7 chr13 113998890 113999028 -5745870 - L1MC1 LINE L1 -56 6277 6139 770 247 102 43 chr13 113999036 113999340 -5745558 + L1M4 LINE L1 3513 3798 -2846 3349 197 42 13 chr13 113999340 114000025 -5744873 + MER44D DNA MER2_type 1 705 0 770 247 102 43 chr13 114000025 114000319 -5744579 + L1M4 LINE L1 3798 4146 -2498 363 310 104 17 chr13 114000444 114000831 -5744067 + L1MDb LINE L1 1011 1438 -4988 290 310 17 52 chr13 114000898 114001014 -5743884 + L2 LINE L2 3190 3301 -12 464 250 23 28 chr13 114002229 114002405 -5742493 + MER106A DNA MER1_type 6 180 -56 214 357 0 0 chr13 114002420 114002490 -5742408 + MER5A DNA MER1_type 119 188 -1 313 266 16 16 chr13 114002770 114002898 -5742000 - L1MC4 LINE L1 -2 8040 7913 398 368 35 20 chr13 114003714 114003915 -5740983 + MIR SINE MIR 16 219 -43 538 244 0 48 chr13 114004448 114004616 -5740282 - MER63 DNA MER1_type -2 1060 901 382 265 136 0 chr13 114004853 114005000 -5739898 - MIR SINE MIR -12 250 84 24 0 0 0 chr13 114006601 114006625 -5738273 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr13 114007492 114007518 -5737380 + AT_rich Low_complexity Low_complexity 1 26 0 552 273 11 68 chr13 114007801 114007977 -5736921 - MER5B DNA MER1_type -6 172 7 2231 80 3 7 chr13 114008366 114008678 -5736220 - AluY SINE Alu 0 311 1 241 244 90 39 chr13 114009197 114009275 -5735623 - MIR SINE MIR -4 258 177 484 233 88 46 chr13 114011364 114011545 -5733353 - MIR SINE MIR -33 229 44 2055 103 3 51 chr13 114011644 114011956 -5732942 + AluSq SINE Alu 1 297 -16 433 188 0 26 chr13 114014932 114015049 -5729849 + CT-rich Low_complexity Low_complexity 2 115 0 2174 110 0 0 chr13 114015059 114015341 -5729557 - AluSq SINE Alu -31 282 1 284 280 104 8 chr13 114016360 114016485 -5728413 + MIR SINE MIR 57 193 -69 272 323 78 10 chr13 114017332 114017524 -5727374 - MIR SINE MIR -1 261 57 226 373 21 36 chr13 114018261 114018454 -5726444 - L3 LINE CR1 -601 976 787 700 259 75 63 chr13 114020023 114020421 -5724477 + L2 LINE L2 2354 2756 -558 244 314 35 0 chr13 114020557 114020643 -5724255 + L2 LINE L2 2966 3054 -259 207 0 0 0 chr13 114021608 114021631 -5723267 + (GA)n Simple_repeat Simple_repeat 2 24 0 269 303 9 0 chr13 114023363 114023472 -5721426 + L1MC/D LINE L1 2722 2831 -3315 198 0 0 0 chr13 114023945 114023967 -5720931 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 280 327 146 48 chr13 114024020 114024666 -5720232 + L2 LINE L2 2135 2843 -471 2334 95 3 3 chr13 114025199 114025503 -5719395 + AluSg SINE Alu 1 304 -6 363 283 127 8 chr13 114025953 114026197 -5718701 - L2 LINE L2 -2 3311 3039 338 163 66 18 chr13 114026206 114026372 -5718526 + (TA)n Simple_repeat Simple_repeat 2 175 0 666 246 10 29 chr13 114026602 114026809 -5718089 + MER3 DNA MER1_type 5 207 -2 1783 165 23 29 chr13 114028086 114028395 -5716503 + AluJo SINE Alu 1 307 -5 227 233 17 17 chr13 114028733 114028793 -5716105 - MIR SINE MIR -110 152 93 566 296 54 29 chr13 114030955 114031195 -5713703 - MIR SINE MIR -12 250 5 300 256 22 11 chr13 114033123 114033213 -5711685 + L1MC/D LINE L1 4614 4704 -1442 227 326 27 20 chr13 114033667 114033814 -5711084 + L1MC/D LINE L1 5701 5848 -1960 186 103 0 0 chr13 114036583 114036612 -5708286 + (TG)n Simple_repeat Simple_repeat 2 30 0 1868 111 15 0 chr13 114038245 114038507 -5706391 - AluSg SINE Alu -44 266 1 204 40 0 0 chr13 114039319 114039344 -5705554 + (TTA)n Simple_repeat Simple_repeat 3 27 0 1570 180 11 7 chr13 114039344 114039622 -5705276 - AluSx SINE Alu -33 279 1 273 338 169 14 chr13 114041526 114041733 -5703165 - MIR SINE MIR -6 256 18 451 0 0 0 chr13 114041918 114041968 -5702930 + (TTTA)n Simple_repeat Simple_repeat 3 72 0 1882 127 0 28 chr13 114041968 114042259 -5702639 - AluSq SINE Alu -1 332 1 288 83 0 0 chr13 114042987 114043035 -5701863 + L1PA8 LINE L1 6125 6172 0 2355 254 40 37 chr13 114043164 114044772 -5700126 - L1MD1 LINE L1 -369 5942 4322 224 261 45 68 chr13 114046636 114046724 -5698174 + MER91A DNA MER1_type 111 196 0 1208 174 0 0 chr13 114047142 114047332 -5697566 + AluJb SINE Alu 107 296 -16 308 77 0 0 chr13 114047369 114047408 -5697490 + MLT2B2 LTR ERVL 477 515 0 556 283 117 55 chr13 114049526 114050277 -5694621 + L2 LINE L2 2502 3303 -10 210 401 141 10 chr13 114050706 114050898 -5694000 + L2 LINE L2 3056 3272 0 2362 79 3 7 chr13 114052055 114052358 -5692540 + AluY SINE Alu 1 302 -9 198 323 46 0 chr13 114054261 114054326 -5690572 + L2 LINE L2 3188 3255 -17 246 346 134 8 chr13 114056399 114056526 -5688372 - L2 LINE L2 -2819 495 353 646 310 0 0 chr13 114056647 114056805 -5688093 + MER45A DNA AcHobo 1 158 -20 3307 274 54 10 chr13 114057859 114059102 -5685796 - L1M4 LINE L1 -788 5358 4061 977 276 98 17 chr13 114059113 114059645 -5685253 - L1MD1 LINE L1 -4048 2348 1774 2819 259 126 10 chr13 114059662 114060726 -5684172 - L1MD1 LINE L1 -5173 1223 37 2413 104 0 0 chr13 114060986 114061295 -5683603 + AluSc SINE Alu 1 309 0 247 298 171 0 chr13 114061308 114061455 -5683443 - MER45A DNA AcHobo -1 177 1 27 0 0 0 chr13 114062902 114062929 -5681969 + AT_rich Low_complexity Low_complexity 1 27 0 910 258 46 25 chr13 114063184 114063510 -5681388 - MLT1C LTR MaLR -83 384 52 22 0 0 0 chr13 114064271 114064293 -5680605 + AT_rich Low_complexity Low_complexity 1 22 0 1786 130 127 21 chr13 114064797 114065136 -5679762 + THE1C LTR MaLR 1 375 0 252 231 0 0 chr13 114066514 114066566 -5678332 - L2 LINE L2 0 3313 3262 887 269 196 21 chr13 114066970 114067726 -5677172 - L2 LINE L2 -64 3249 2357 471 343 28 16 chr13 114067971 114068219 -5676679 - MIR SINE MIR -2 260 10 2350 75 0 23 chr13 114068388 114068693 -5676205 + AluY SINE Alu 1 298 -13 926 211 29 10 chr13 114068698 114068906 -5675992 + MER82 DNA MER2_type 1 212 -441 497 302 37 5 chr13 114069217 114069406 -5675492 - LTR67 LTR ERVL -9 548 354 41442 61 3 6 chr13 114069823 114075990 -5668908 - L1PA5 LINE L1 -3 6151 1 1443 235 72 43 chr13 114075990 114076432 -5668466 + MER82 DNA MER2_type 199 653 0 1747 179 3 3 chr13 114076710 114077001 -5667897 - AluSx SINE Alu -21 291 1 22 0 0 0 chr13 114077134 114077156 -5667742 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 114077223 114077250 -5667648 + AT_rich Low_complexity Low_complexity 1 27 0 275 379 100 32 chr13 114078843 114079403 -5665495 + L2 LINE L2 1363 1960 -1354 727 247 127 44 chr13 114079723 114080128 -5664770 + L1MC3 LINE L1 9 336 -5709 4095 223 114 36 chr13 114080176 114080613 -5664285 + L1MC3 LINE L1 760 1162 -5402 2324 52 0 21 chr13 114080613 114080947 -5663951 + AluY SINE Alu 1 328 0 4095 223 114 36 chr13 114080947 114081128 -5663770 + L1MC3 LINE L1 1162 1327 -5237 941 220 8 8 chr13 114081128 114081387 -5663511 + L1MA4 LINE L1 6042 6300 0 4095 223 114 36 chr13 114081387 114083270 -5661628 + L1MC3 LINE L1 1327 3620 -2944 923 269 37 39 chr13 114083282 114083691 -5661207 + L1MC3 LINE L1 5157 5564 -1000 1769 155 34 12 chr13 114083756 114084078 -5660820 - L1MA8 LINE L1 -22 6269 5941 9380 206 69 28 chr13 114084087 114085194 -5659704 + L1MC3 LINE L1 5672 6732 -1471 1809 119 0 113 chr13 114085194 114085529 -5659369 + AluSx SINE Alu 1 297 -5 9380 206 69 28 chr13 114085529 114085769 -5659129 + L1MC3 LINE L1 6732 6961 -1242 249 33 0 0 chr13 114085769 114085799 -5659099 + (CA)n Simple_repeat Simple_repeat 1 30 0 9380 206 69 28 chr13 114085799 114086875 -5658023 + L1MC3 LINE L1 6961 8196 -7 1641 110 0 89 chr13 114087339 114087630 -5657268 - AluSg SINE Alu -2 308 44 2246 105 7 7 chr13 114087797 114088103 -5656795 + AluSq SINE Alu 3 308 -5 285 310 20 20 chr13 114089309 114089409 -5655489 + MIR SINE MIR 3 102 -160 24 32 0 0 chr13 114090290 114090321 -5654577 + AT_rich Low_complexity Low_complexity 1 31 0 794 147 49 0 chr13 114091429 114091572 -5653326 - MLT2B1 LTR ERVL -370 150 1 2349 29 7 0 chr13 114092190 114092470 -5652428 - L1PA4 LINE L1 -2 6153 5872 1907 167 37 6 chr13 114092614 114092968 -5651930 + MLT1A1 LTR MaLR 1 365 0 2566 37 3 0 chr13 114094247 114094545 -5650353 + AluY SINE Alu 1 299 -12 1490 146 15 0 chr13 114094635 114094896 -5650002 - L1MA4 LINE L1 -5 6295 6031 546 204 1 0 chr13 114095358 114095487 -5649411 + L1MA4 LINE L1 5900 6029 -268 * 1558 136 15 82 chr13 114095480 114095810 -5649088 - L1MA4 LINE L1 -251 6049 5742 230 200 53 80 chr13 114096380 114096455 -5648443 - MIR SINE MIR -164 98 26 3985 154 38 1 chr13 114096565 114097305 -5647593 - L1PB4 LINE L1 -1 6155 5389 297 262 19 56 chr13 114097806 114097913 -5646985 - L2 LINE L2 -1 3312 3210 261 330 189 29 chr13 114098166 114098495 -5646403 - L2 LINE L2 -701 2613 2338 344 22 0 22 chr13 114098495 114098541 -5646357 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 330 189 29 chr13 114098541 114098735 -5646163 - L2 LINE L2 -976 2338 2006 327 228 69 14 chr13 114099656 114099801 -5645097 - L1ME4a LINE L1 -4 6117 5965 340 244 127 52 chr13 114100093 114100384 -5644514 - HAL1 LINE L1 -4 2503 2191 2333 67 0 10 chr13 114101789 114102109 -5642789 - AluY SINE Alu 0 311 1 331 320 113 39 chr13 114102624 114102855 -5642043 - MIR SINE MIR -9 253 6 329 225 35 61 chr13 114103524 114103696 -5641202 + L1MC/D LINE L1 5273 5392 -772 22 70 0 0 chr13 114103699 114103742 -5641156 + AT_rich Low_complexity Low_complexity 1 43 0 271 332 102 70 chr13 114103991 114104521 -5640377 - L2 LINE L2 -338 2976 2430 4470 165 26 25 chr13 114106048 114106782 -5638116 - L1MC1 LINE L1 -8 6325 5588 1653 148 39 33 chr13 114106782 114107087 -5637811 + AluJb SINE Alu 6 312 0 4470 165 26 25 chr13 114107087 114107231 -5637667 - L1MC1 LINE L1 -745 5588 5446 670 246 64 43 chr13 114107231 114107511 -5637387 + L1MC4 LINE L1 7611 7896 -146 1776 198 12 12 chr13 114107609 114107948 -5636950 - MLT1A1 LTR MaLR 0 365 27 1842 204 68 11 chr13 114108000 114108442 -5636456 - MLT1C LTR MaLR 0 467 1 261 203 16 31 chr13 114108442 114108506 -5636392 + L1MC4 LINE L1 7974 8036 -6 1385 121 5 5 chr13 114108600 114108840 -5636058 + AluSg/x SINE Alu 85 324 0 284 280 373 0 chr13 114111471 114111621 -5633277 - MIR SINE MIR -55 207 2 273 351 15 23 chr13 114111797 114111928 -5632970 - MIR SINE MIR -109 153 24 401 272 43 62 chr13 114111974 114112231 -5632667 - LTR41 LTR ERVL -12 761 510 415 218 18 59 chr13 114112556 114112726 -5632172 + LTR41 LTR ERVL 591 753 -20 2215 115 0 0 chr13 114113044 114113332 -5631566 + AluSx SINE Alu 1 288 -24 216 0 0 0 chr13 114113623 114113647 -5631251 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 422 226 26 113 chr13 114113983 114114248 -5630650 - LTR41 LTR ERVL -13 760 519 380 161 46 0 chr13 114114469 114114556 -5630342 - LTR41 LTR ERVL -592 181 91 247 150 33 17 chr13 114115151 114115211 -5629687 + GA-rich Low_complexity Low_complexity 3 63 0 263 312 13 0 chr13 114115407 114115484 -5629414 - L2 LINE L2 -9 3263 3186 2052 160 151 72 chr13 114116008 114116368 -5628530 - LTR18B LTR ERVL 0 614 284 2552 96 3 6 chr13 114116368 114116724 -5628174 + THE1A LTR MaLR 1 355 0 11945 90 5 0 chr13 114116724 114118297 -5626601 + THE1A-int LTR MaLR 1 1580 0 2575 95 17 0 chr13 114118297 114118646 -5626252 + THE1A LTR MaLR 1 355 0 2052 160 151 72 chr13 114118646 114118852 -5626046 - LTR18B LTR ERVL -329 285 1 21 0 0 0 chr13 114119219 114119240 -5625658 + AT_rich Low_complexity Low_complexity 1 21 0 723 208 38 64 chr13 114121772 114122036 -5622862 + L1MA10 LINE L1 6078 6334 0 243 0 0 0 chr13 114122349 114122376 -5622522 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 237 370 98 23 chr13 114123374 114123853 -5621045 + L2 LINE L2 1833 2347 -967 24 91 0 0 chr13 114125105 114125171 -5619727 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr13 114125392 114125420 -5619478 + AT_rich Low_complexity Low_complexity 1 28 0 492 321 49 11 chr13 114126129 114126359 -5618539 - MIR SINE MIR -11 251 10 1002 157 75 31 chr13 114127008 114127220 -5617678 - L1MD3 LINE L1 0 7995 7769 2139 137 0 0 chr13 114127220 114127519 -5617379 - AluSq SINE Alu -14 299 1 1002 157 75 31 chr13 114127519 114127561 -5617337 - L1MD3 LINE L1 -226 7769 7730 2206 65 0 11 chr13 114127736 114128013 -5616885 + AluY SINE Alu 28 301 -10 280 223 122 40 chr13 114128440 114128517 -5616381 - L1ME4a LINE L1 -3 6118 6049 2935 160 20 4 chr13 114128517 114129053 -5615845 + L1PA15 LINE L1 5620 6164 -1 280 223 122 40 chr13 114129053 114129123 -5615775 - L1ME4a LINE L1 -72 6049 5959 25 51 0 0 chr13 114129668 114129707 -5615191 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr13 114129802 114129826 -5615072 + AT_rich Low_complexity Low_complexity 1 24 0 2113 109 0 56 chr13 114129894 114130215 -5614683 - AluSg SINE Alu -7 303 1 2274 262 134 59 chr13 114130417 114130965 -5613933 - L2 LINE L2 -72 3241 2736 5644 33 1 3 chr13 114130965 114131636 -5613262 + L1PA4 LINE L1 5483 6152 -3 2274 262 134 59 chr13 114131636 114132389 -5612509 - L2 LINE L2 -577 2736 1836 2826 19 0 0 chr13 114133396 114133712 -5611186 - AluYb8 SINE Alu -2 316 1 1002 245 131 12 chr13 114133965 114134386 -5610512 - Charlie4a DNA MER1_type -17 491 21 339 317 160 3 chr13 114135816 114136103 -5608795 + L1MC/D LINE L1 5255 5586 -656 411 310 75 34 chr13 114136329 114136568 -5608330 + MIR SINE MIR 6 254 -8 4588 185 31 9 chr13 114136666 114137656 -5607242 - L1MA7 LINE L1 -2 6289 5278 264 262 181 40 chr13 114138765 114138914 -5605984 + MIR SINE MIR 33 202 -60 180 0 0 0 chr13 114139211 114139231 -5605667 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1478 196 33 30 chr13 114140505 114140633 -5604265 + AluJb SINE Alu 1 127 -185 315 0 0 0 chr13 114140633 114140668 -5604230 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1478 196 33 30 chr13 114140668 114140840 -5604058 + AluJb SINE Alu 127 302 -10 31 76 0 0 chr13 114141533 114141599 -5603299 + AT_rich Low_complexity Low_complexity 1 66 0 561 258 5 5 chr13 114142228 114142418 -5602480 - L1 LINE L1 -2657 3489 3300 251 206 88 0 chr13 114142423 114142491 -5602407 - L1MDb LINE L1 -6295 114 41 1951 138 3 28 chr13 114143000 114143320 -5601578 - AluSq SINE Alu -1 312 1 1939 146 72 50 chr13 114144046 114144465 -5600433 - MSTA LTR MaLR 0 428 1 185 316 102 20 chr13 114144970 114145068 -5599830 + L2 LINE L2 3186 3291 -22 237 380 54 18 chr13 114146959 114147125 -5597773 + L2 LINE L2 3101 3272 0 1121 219 38 90 chr13 114147374 114147740 -5597158 + MLT1A1 LTR MaLR 19 365 0 341 283 17 8 chr13 114149048 114149168 -5595730 + CT-rich Low_complexity Low_complexity 4 124 0 1030 260 118 62 chr13 114149756 114149939 -5594959 + L1ME2 LINE L1 4384 4555 -1591 1692 191 66 37 chr13 114149939 114150427 -5594471 + MLT1D LTR MaLR 4 505 0 1030 260 118 62 chr13 114150427 114151048 -5593850 + L1ME2 LINE L1 4555 5233 -913 464 253 60 61 chr13 114151150 114151508 -5593390 + LTR30 LTR ERV1 104 532 -24 2113 235 120 24 chr13 114151526 114152378 -5592520 + L1ME2 LINE L1 5229 6164 0 1899 167 0 0 chr13 114152809 114153120 -5591778 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr13 114153151 114153172 -5591726 + AT_rich Low_complexity Low_complexity 1 21 0 255 314 11 63 chr13 114153172 114153522 -5591376 + L1ME3A LINE L1 3081 3412 -2734 652 319 55 38 chr13 114153607 114154112 -5590786 + L1ME3A LINE L1 5429 5942 -228 29 28 0 0 chr13 114154370 114154406 -5590492 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr13 114155608 114155654 -5589244 + AT_rich Low_complexity Low_complexity 1 46 0 231 283 0 0 chr13 114156595 114156648 -5588250 + L2 LINE L2 3219 3271 -1 735 251 6 0 chr13 114159227 114159406 -5585492 + L1M4 LINE L1 2533 2712 -3434 5876 226 62 38 chr13 114159410 114160286 -5584612 + L1M4 LINE L1 3280 4133 -2045 276 30 0 0 chr13 114160286 114160319 -5584579 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5876 226 62 38 chr13 114160319 114161854 -5583044 + L1M4 LINE L1 4133 5752 -426 181 295 39 62 chr13 114162751 114162880 -5582018 - MIR SINE MIR -26 236 111 491 283 29 7 chr13 114163038 114163176 -5581722 + MIR SINE MIR 7 147 -115 933 264 74 90 chr13 114163208 114163897 -5581001 + MER21B LTR ERV1 60 714 -149 370 291 27 0 chr13 114163914 114164024 -5580874 + MIR SINE MIR 140 252 -10 7754 17 0 0 chr13 114164556 114165473 -5579425 + L1PA3 LINE L1 5231 6147 -8 853 203 69 15 chr13 114165710 114165912 -5578986 - MLT1A1 LTR MaLR -135 230 18 234 204 0 0 chr13 114165966 114166010 -5578888 - MER53 DNA DNA 0 189 146 2094 133 0 0 chr13 114166226 114166520 -5578378 - AluSq SINE Alu -19 294 1 344 309 46 26 chr13 114166520 114166672 -5578226 + MLT1J LTR MaLR 311 465 -46 2369 91 3 0 chr13 114166852 114167149 -5577749 - AluSx SINE Alu -14 298 1 1651 179 124 52 chr13 114168786 114169262 -5575636 - MER67D LTR ERV1 -4 510 1 279 0 0 0 chr13 114169346 114169377 -5575521 + (TC)n Simple_repeat Simple_repeat 1 31 0 2193 123 47 19 chr13 114169824 114170189 -5574709 + THE1C LTR MaLR 1 375 0 9904 121 32 12 chr13 114170189 114171738 -5573160 + THE1C-int LTR MaLR 1 1580 0 2196 104 52 22 chr13 114171738 114172102 -5572796 + THE1C LTR MaLR 1 375 0 282 282 51 0 chr13 114172263 114172341 -5572557 - MIR3 SINE MIR -38 170 89 639 245 43 67 chr13 114172774 114173027 -5571871 + MIR SINE MIR 1 247 -15 1953 117 7 42 chr13 114173080 114173387 -5571511 + AluSx SINE Alu 1 296 -16 414 158 0 30 chr13 114173398 114173499 -5571399 + (CA)n Simple_repeat Simple_repeat 2 99 0 189 370 0 0 chr13 114173499 114173572 -5571326 + L3 LINE CR1 1238 1310 -267 2337 159 18 0 chr13 114173673 114174056 -5570842 - MSTC LTR MaLR 0 428 39 715 232 42 0 chr13 114174467 114174635 -5570263 + LTR40a LTR ERVL 345 519 0 1410 184 8 4 chr13 114175257 114175502 -5569396 - AluJo SINE Alu -24 288 43 2128 245 88 35 chr13 114175523 114176437 -5568461 + L1M4 LINE L1 4399 5360 -786 2303 213 39 22 chr13 114176438 114177026 -5567872 + L1MA9 LINE L1 4644 5241 -905 3553 191 47 18 chr13 114177056 114177969 -5566929 + L1MA9 LINE L1 5225 6282 -30 493 283 33 0 chr13 114178046 114178198 -5566700 + L1ME1 LINE L1 6001 6157 -9 21 71 0 0 chr13 114178394 114178436 -5566462 + AT_rich Low_complexity Low_complexity 1 42 0 188 256 24 104 chr13 114179443 114179568 -5565330 - L3 LINE CR1 -838 739 625 197 196 18 0 chr13 114179618 114179674 -5565224 + (TG)n Simple_repeat Simple_repeat 2 58 0 21 36 0 0 chr13 114179857 114179885 -5565013 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr13 114179910 114179941 -5564957 + AT_rich Low_complexity Low_complexity 1 31 0 660 209 104 133 chr13 114180003 114180386 -5564512 - MLT1A2 LTR MaLR 0 374 3 1507 194 29 0 chr13 114180436 114180715 -5564183 - AluJb SINE Alu -24 288 2 282 193 0 0 chr13 114181170 114181227 -5563671 + (TA)n Simple_repeat Simple_repeat 1 57 0 28 48 0 0 chr13 114181239 114181281 -5563617 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr13 114182268 114182294 -5562604 + AT_rich Low_complexity Low_complexity 1 26 0 251 328 16 16 chr13 114182487 114182615 -5562283 + CT-rich Low_complexity Low_complexity 2 129 0 1277 201 13 49 chr13 114183229 114183533 -5561365 + AluJo SINE Alu 1 293 -19 2272 114 0 0 chr13 114183886 114184194 -5560704 - AluSx SINE Alu 0 312 5 243 0 0 0 chr13 114184233 114184260 -5560638 + (TG)n Simple_repeat Simple_repeat 2 28 0 423 0 0 0 chr13 114184327 114184374 -5560524 + (TG)n Simple_repeat Simple_repeat 2 48 0 356 276 0 57 chr13 114187109 114187214 -5557684 + MIR SINE MIR 58 156 -106 193 331 92 31 chr13 114187476 114187639 -5557259 - MIR SINE MIR -38 224 52 926 156 17 46 chr13 114188304 114188477 -5556421 - FRAM SINE Alu -12 164 1 297 0 0 0 chr13 114188662 114188695 -5556203 + (TG)n Simple_repeat Simple_repeat 2 34 0 1942 141 10 10 chr13 114188696 114189001 -5555897 - AluSx SINE Alu -7 305 1 226 205 0 0 chr13 114190890 114190929 -5553969 + polypyrimidine Low_complexity Low_complexity 2 40 0 814 265 57 37 chr13 114192009 114192307 -5552591 - MER87 LTR ERV1 -30 511 208 662 251 199 15 chr13 114192795 114193066 -5551832 + MER5C DNA MER1_type 3 323 -1 830 312 108 63 chr13 114193067 114194020 -5550878 + L2 LINE L2 2318 3313 0 4123 119 14 0 chr13 114194720 114195342 -5549556 - L1PA14 LINE L1 0 6161 5531 1344 178 0 0 chr13 114195343 114195584 -5549314 + L1P LINE L1 4832 5072 -1074 709 292 136 17 chr13 114195774 114196295 -5548603 - L1ME3A LINE L1 -9 6230 5648 431 268 110 14 chr13 114196332 114196769 -5548129 - L1ME3A LINE L1 -678 5553 5076 1334 178 0 0 chr13 114196782 114197013 -5547885 + Ricksha DNA DNA 8 238 -3008 534 193 9 0 chr13 114197012 114197121 -5547777 - Ricksha DNA DNA -1144 110 1 * 1981 274 100 37 chr13 114197223 114199136 -5545762 - L1ME3A LINE L1 -1275 4940 2907 595 191 15 85 chr13 114199185 114199229 -5545669 - L1MA9 LINE L1 -35 6277 6231 1601 171 32 60 chr13 114199229 114199545 -5545353 - AluJb SINE Alu -5 307 1 595 191 15 85 chr13 114199545 114199699 -5545199 - L1MA9 LINE L1 -81 6231 6093 365 283 89 16 chr13 114199916 114200465 -5544433 - L1MEc LINE L1 -3542 2673 2127 31 88 0 0 chr13 114200675 114200755 -5544143 + AT_rich Low_complexity Low_complexity 1 80 0 1582 203 24 3 chr13 114201769 114201891 -5543007 + AluJb SINE Alu 1 119 -193 261 0 0 0 chr13 114201891 114201920 -5542978 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1582 203 24 3 chr13 114201920 114202092 -5542806 + AluJb SINE Alu 119 301 -11 737 288 119 47 chr13 114202375 114203241 -5541657 - L1ME3A LINE L1 -12 6141 5242 230 286 53 47 chr13 114203270 114203348 -5541550 - L1ME3A LINE L1 -1178 4951 4875 2181 99 10 0 chr13 114203348 114203641 -5541257 + AluSg SINE Alu 1 296 -14 230 286 53 47 chr13 114203641 114203733 -5541165 - L1ME3A LINE L1 -1254 4875 4780 237 265 130 56 chr13 114203763 114203978 -5540920 - L1ME3A LINE L1 -1426 4703 4473 2654 31 0 22 chr13 114204150 114204468 -5540430 + AluY SINE Alu 1 311 0 872 279 107 32 chr13 114204514 114205458 -5539440 - L1ME3A LINE L1 -1868 4261 3247 408 294 59 7 chr13 114205526 114205679 -5539219 - L1ME3A LINE L1 -3086 3043 2883 317 301 105 38 chr13 114205744 114206010 -5538888 - L1ME3A LINE L1 -5052 1067 784 408 20 0 0 chr13 114206030 114206079 -5538819 + (TG)n Simple_repeat Simple_repeat 2 50 0 38 85 0 0 chr13 114207317 114207411 -5537487 + AT_rich Low_complexity Low_complexity 1 94 0 460 325 80 19 chr13 114209131 114209343 -5535555 - MIR SINE MIR -15 247 23 387 60 0 0 chr13 114209395 114209445 -5535453 + (TTA)n Simple_repeat Simple_repeat 3 52 0 24 0 0 0 chr13 114210384 114210408 -5534490 + AT_rich Low_complexity Low_complexity 1 24 0 950 154 0 0 chr13 114210453 114210602 -5534296 + AluJb SINE Alu 155 303 -9 288 211 72 86 chr13 114211018 114211170 -5533728 + HsTC2 DNA Tc2 29 1896 -2 21 0 0 0 chr13 114211327 114211348 -5533550 + AT_rich Low_complexity Low_complexity 1 21 0 2033 154 0 3 chr13 114211368 114211673 -5533225 - AluSg SINE Alu -6 304 1 391 345 21 5 chr13 114212041 114212232 -5532666 + MIR SINE MIR 41 234 -28 353 313 96 72 chr13 114212483 114212820 -5532078 - L1M4 LINE L1 -942 5204 4852 4940 122 62 4 chr13 114212820 114213601 -5531297 + LTR1B LTR ERV1 1 826 0 353 313 96 72 chr13 114213601 114213723 -5531175 - L1M4 LINE L1 -1294 4852 4734 477 222 187 0 chr13 114213790 114213961 -5530937 - L1ME3A LINE L1 -120 6050 5848 7245 52 0 0 chr13 114214072 114215662 -5529236 - L1PA5 LINE L1 -2 6152 4562 7454 111 1 8 chr13 114215665 114216811 -5528087 + L1P LINE L1 657 1794 -4352 563 316 25 8 chr13 114216908 114217152 -5527746 - L1MC4a LINE L1 -111 7697 7450 1942 146 35 0 chr13 114218345 114218632 -5526266 - AluJo SINE Alu -15 297 1 2144 109 3 3 chr13 114219833 114220127 -5524771 - AluSp SINE Alu -19 294 1 218 316 13 0 chr13 114220324 114220400 -5524498 - MIR SINE MIR 0 262 186 235 233 0 0 chr13 114220591 114220651 -5524247 - MER103 DNA DNA -106 60 1 2446 43 0 23 chr13 114220695 114220994 -5523904 - AluY SINE Alu -19 292 1 2478 117 113 9 chr13 114221085 114221538 -5523360 - MER61D LTR ERV1 0 501 2 24 32 0 0 chr13 114223355 114223386 -5521512 + AT_rich Low_complexity Low_complexity 1 31 0 2190 118 13 0 chr13 114223480 114223785 -5521113 + AluSq SINE Alu 1 309 -4 1733 146 10 51 chr13 114224648 114224943 -5519955 - AluJb SINE Alu -21 291 9 24 96 0 0 chr13 114226703 114226776 -5518122 + AT_rich Low_complexity Low_complexity 1 73 0 2047 129 25 3 chr13 114226961 114227247 -5517651 - AluSx SINE Alu -20 292 1 672 179 35 43 chr13 114228020 114228219 -5516679 + MER6 DNA MER2_type -65 864 -1 1625 166 35 59 chr13 114228635 114229008 -5515890 - THE1B LTR MaLR 0 364 1 34 42 0 0 chr13 114229959 114230007 -5514891 + AT_rich Low_complexity Low_complexity 1 48 0 386 279 117 45 chr13 114230305 114230527 -5514371 + MIR SINE MIR 1 238 -24 217 382 124 22 chr13 114230579 114230804 -5514094 - MIR SINE MIR -13 249 2 29 47 0 0 chr13 114230935 114230978 -5513920 + AT_rich Low_complexity Low_complexity 1 43 0 1991 104 0 88 chr13 114231393 114231721 -5513177 + AluSx SINE Alu 1 299 -13 381 22 0 0 chr13 114233053 114233099 -5511799 + (TG)n Simple_repeat Simple_repeat 2 47 0 905 277 54 80 chr13 114234387 114235309 -5509589 - L1MEd LINE L1 -4863 1256 359 6397 227 12 37 chr13 114236188 114239003 -5505895 - L1PA16 LINE L1 -177 5989 3292 14703 148 65 35 chr13 114239128 114239693 -5505205 - L1PA15-16 LINE L1 -3864 2985 2438 189 0 0 0 chr13 114239693 114239714 -5505184 + (TC)n Simple_repeat Simple_repeat 2 22 0 14703 148 65 35 chr13 114239714 114242045 -5502853 - L1PA15-16 LINE L1 -4411 2438 1 506 299 27 7 chr13 114242946 114243093 -5501805 - MIR SINE MIR -93 169 20 242 264 19 75 chr13 114243254 114243360 -5501538 + L2 LINE L2 3213 3312 -1 1007 234 94 8 chr13 114243416 114243681 -5501217 + MLT1H LTR MaLR 1 288 -261 263 272 37 0 chr13 114243767 114243848 -5501050 + MLT1H LTR MaLR 443 526 -23 680 299 16 19 chr13 114244136 114244447 -5500451 + L1MA9 LINE L1 5973 6282 -30 193 372 16 25 chr13 114244694 114244815 -5500083 + MIR SINE MIR 35 154 -108 23 0 0 0 chr13 114245629 114245652 -5499246 + AT_rich Low_complexity Low_complexity 1 23 0 2710 98 0 6 chr13 114247964 114248330 -5496568 - THE1B LTR MaLR 0 364 1 2318 102 3 3 chr13 114248415 114248720 -5496178 + AluSp SINE Alu 3 307 -6 302 311 44 30 chr13 114248937 114249072 -5495826 + MIR SINE MIR 10 146 -116 2348 101 3 0 chr13 114250472 114250780 -5494118 + AluSp SINE Alu 1 309 -4 356 235 208 27 chr13 114251145 114251294 -5493604 + MER5A DNA MER1_type 9 184 -5 6844 101 12 12 chr13 114251744 114252801 -5492097 + MER11C LTR ERVK 1 1057 -14 396 323 121 54 chr13 114253145 114253476 -5491422 + L3 LINE CR1 966 1318 -259 1016 249 80 12 chr13 114253789 114254126 -5490772 - MLT1C LTR MaLR 0 467 108 1609 192 19 3 chr13 114254132 114254455 -5490443 + Tigger7 DNA MER2_type 1 328 -2159 1118 175 52 14 chr13 114254455 114254774 -5490124 + Tigger7 DNA MER2_type 385 2587 0 326 257 0 48 chr13 114254778 114254883 -5490015 - MLT1C LTR MaLR -367 100 1 21 36 0 0 chr13 114255572 114255600 -5489298 + AT_rich Low_complexity Low_complexity 1 28 0 181 408 19 0 chr13 114256510 114256613 -5488285 + MIR3 SINE MIR 79 183 -25 415 279 43 31 chr13 114257288 114257449 -5487449 + MIR SINE MIR 36 198 -64 212 296 0 0 chr13 114258118 114258172 -5486726 - MIR SINE MIR -59 149 96 2076 139 3 0 chr13 114260019 114260342 -5484556 + AluSx SINE Alu 1 324 0 382 245 54 0 chr13 114261116 114261243 -5483655 + L1M4 LINE L1 4074 4207 -1939 297 0 0 0 chr13 114262358 114262391 -5482507 + (CA)n Simple_repeat Simple_repeat 2 34 0 378 334 158 21 chr13 114262585 114263317 -5481581 - L2 LINE L2 -106 3207 2368 273 281 26 35 chr13 114263780 114263894 -5481004 - MIR3 SINE MIR -5 203 91 192 182 0 0 chr13 114264141 114264185 -5480713 + (TG)n Simple_repeat Simple_repeat 1 44 0 2556 93 14 0 chr13 114265005 114265369 -5479529 + MER57B LTR ERV1 1 369 -65 220 304 11 22 chr13 114265439 114265620 -5479278 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2009 133 31 0 chr13 114265981 114266267 -5478631 - AluSx SINE Alu -17 295 1 324 265 136 19 chr13 114367714 114367876 -5377022 - L1ME4a LINE L1 -11 6110 5930 1824 155 16 20 chr13 114367978 114368282 -5376616 - AluSx SINE Alu -9 303 1 2010 131 29 6 chr13 114368403 114368746 -5376152 + L1MA8 LINE L1 5939 6289 -2 256 321 64 0 chr13 114368846 114368955 -5375943 - L1ME4a LINE L1 -2176 5632 5517 2392 69 0 0 chr13 114369671 114369959 -5374939 + AluY SINE Alu 1 288 -23 196 267 44 0 chr13 114369978 114370023 -5374875 - L2 LINE L2 -54 3218 3172 482 281 39 34 chr13 114370091 114370269 -5374629 - MIR SINE MIR 0 262 84 316 269 186 7 chr13 114370280 114370425 -5374473 - MER104 DNA Tc2 -9 171 1 283 328 59 25 chr13 114370810 114371048 -5373850 - L2 LINE L2 -1582 1732 1487 183 314 14 14 chr13 114372271 114372341 -5372557 + MIR SINE MIR 180 249 -13 1862 143 37 66 chr13 114373551 114373928 -5370970 + MLT2D LTR ERVL 1 366 -48 198 71 0 0 chr13 114373958 114373986 -5370912 + (TC)n Simple_repeat Simple_repeat 1 28 0 1046 126 33 22 chr13 114374138 114374321 -5370577 + MER53 DNA DNA 5 189 0 1801 134 67 20 chr13 114374681 114374979 -5369919 - AluSx SINE Alu 0 312 1 281 335 11 62 chr13 114375382 114375558 -5369340 - MIR SINE MIR -83 179 13 509 250 37 98 chr13 114375900 114376059 -5368839 + MIR SINE MIR 5 145 -117 2221 118 0 10 chr13 114376059 114376372 -5368526 + AluSx SINE Alu 1 310 -2 509 250 37 98 chr13 114376372 114376456 -5368442 + MIR SINE MIR 145 233 -29 272 337 58 24 chr13 114376507 114376712 -5368186 - L2 LINE L2 -55 3258 3047 1716 206 63 45 chr13 114377784 114378276 -5366622 - MER39 LTR ERV1 -2 658 11 258 32 0 0 chr13 114378909 114378940 -5365958 + (TG)n Simple_repeat Simple_repeat 1 31 0 224 321 147 0 chr13 114379475 114379609 -5365289 - MIR SINE MIR -75 187 35 237 253 88 22 chr13 114380193 114380284 -5364614 - L2 LINE L2 -1 3271 3175 297 291 48 0 chr13 114381713 114381816 -5363082 - MIR3 SINE MIR -22 186 79 21 36 0 0 chr13 114382030 114382058 -5362840 + AT_rich Low_complexity Low_complexity 1 28 0 3279 161 102 11 chr13 114382608 114382747 -5362151 - LTR9 LTR ERV1 0 612 487 189 0 0 0 chr13 114382747 114382768 -5362130 + (GA)n Simple_repeat Simple_repeat 2 22 0 3279 161 102 11 chr13 114382768 114383188 -5361710 - LTR9 LTR ERV1 -125 487 2 714 226 31 41 chr13 114383672 114383867 -5361031 - LTR19C LTR ERV1 0 779 587 2836 83 60 21 chr13 114383868 114384299 -5360599 - LTR7 LTR ERV1 -2 448 1 2569 79 45 16 chr13 114384299 114384680 -5360218 - HERVH LTR ERV1 0 7713 7322 1340 130 17 46 chr13 114384678 114384917 -5359981 - HERVH LTR ERV1 -1894 5819 5588 * 3957 132 60 21 chr13 114384897 114385550 -5359348 - HERVH LTR ERV1 -2564 5149 4472 * 23629 83 62 71 chr13 114385535 114389466 -5355432 - HERVH LTR ERV1 -3818 3895 1 2712 91 63 21 chr13 114389468 114389898 -5355000 - LTR7 LTR ERV1 -2 448 1 704 285 21 86 chr13 114389917 114390338 -5354560 - LTR9 LTR ERV1 -212 400 7 2157 272 51 78 chr13 114391145 114391329 -5353569 - L1MC5 LINE L1 -139 7822 7635 2040 132 3 3 chr13 114391329 114391625 -5353273 + AluSg SINE Alu 1 296 -14 2157 272 51 78 chr13 114391625 114391641 -5353257 - L1MC5 LINE L1 -326 7635 7620 1876 168 3 3 chr13 114391641 114391933 -5352965 - AluSx SINE Alu -20 292 1 2157 272 51 78 chr13 114391933 114392065 -5352833 - L1MC5 LINE L1 -341 7620 7486 2476 77 0 0 chr13 114392065 114392364 -5352534 - AluY SINE Alu -12 299 1 2157 272 51 78 chr13 114392364 114392911 -5351987 - L1MC5 LINE L1 -475 7486 6926 2526 121 28 6 chr13 114392911 114393267 -5351631 + THE1B LTR MaLR 1 364 0 2157 272 51 78 chr13 114393267 114394176 -5350722 - L1MC5 LINE L1 -1035 6926 6075 757 291 77 16 chr13 114394307 114394620 -5350278 - L1MC5 LINE L1 -1973 5835 5504 203 88 29 0 chr13 114395368 114395402 -5349496 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 202 300 40 80 chr13 114395418 114395518 -5349380 - L2 LINE L2 -15 3298 3203 200 279 49 0 chr13 114395629 114395690 -5349208 + L2 LINE L2 1784 1847 -1467 1165 311 59 59 chr13 114395714 114396563 -5348335 + L1MEc LINE L1 36 884 -5512 219 304 104 84 chr13 114396564 114396757 -5348141 + L2 LINE L2 1898 2101 -1213 2313 100 0 3 chr13 114396757 114397058 -5347840 - AluY SINE Alu -11 300 1 219 304 104 84 chr13 114397058 114397173 -5347725 + L2 LINE L2 2101 2212 -1102 22 35 0 0 chr13 114397202 114397231 -5347667 + AT_rich Low_complexity Low_complexity 1 29 0 316 353 3 17 chr13 114397321 114397462 -5347436 - MIR SINE MIR -67 141 22 3447 80 9 2 chr13 114398437 114398886 -5346012 - L1PA13 LINE L1 -3 6160 5709 348 267 51 32 chr13 114399812 114399993 -5344905 - MIR SINE MIR -62 146 4 1901 129 75 0 chr13 114400015 114400293 -5344605 + AluSg SINE Alu 1 299 -11 383 319 30 30 chr13 114400444 114400613 -5344285 + MIR3 SINE MIR 36 204 -4 25 75 0 0 chr13 114401144 114401197 -5343701 + AT_rich Low_complexity Low_complexity 1 53 0 441 238 95 24 chr13 114401553 114401721 -5343177 - MLT1J2 LTR MaLR -270 180 1 1140 238 65 28 chr13 114402035 114402493 -5342405 + L1MC5 LINE L1 7452 7926 -35 2017 108 35 14 chr13 114404276 114404564 -5340334 - AluSg SINE Alu -16 294 1 703 276 65 65 chr13 114404643 114404983 -5339915 + MLT2F LTR ERVL 324 663 0 319 280 11 0 chr13 114405128 114405221 -5339677 - L1ME LINE L1 -379 5787 5694 3191 251 25 18 chr13 114405401 114406299 -5338599 - L1ME1 LINE L1 -6 6229 5326 2206 166 52 8 chr13 114406306 114406692 -5338206 + MER57A LTR ERV1 1 403 0 5818 258 84 29 chr13 114406698 114409142 -5335756 - L1ME1 LINE L1 -3640 2575 35 295 239 33 43 chr13 114409144 114409236 -5335662 + MER69 DNA AcHobo 2423 2513 -13 306 273 0 13 chr13 114409693 114409770 -5335128 + GA-rich Low_complexity Low_complexity 5 80 0 215 241 0 0 chr13 114410669 114410723 -5334175 + T-rich Low_complexity Low_complexity 1 54 0 2097 151 15 59 chr13 114412148 114412538 -5332360 - THE1C LTR MaLR 0 375 3 2112 285 171 17 chr13 114414408 114415653 -5329245 - L1MC4a LINE L1 -907 6901 5419 1548 302 86 41 chr13 114416415 114417405 -5327493 - ERVL LTR ERVL -839 4925 3892 835 256 11 0 chr13 114417736 114417912 -5326986 - MER5B DNA MER1_type 0 178 1 2202 101 20 3 chr13 114418117 114418414 -5326484 - AluSq SINE Alu -11 302 1 23 0 0 0 chr13 114418485 114418508 -5326390 + AT_rich Low_complexity Low_complexity 1 23 0 1941 90 22 158 chr13 114419541 114419951 -5324947 - THE1A LTR MaLR -1 354 1 1691 203 51 0 chr13 114419951 114420283 -5324615 - MLT1A1 LTR MaLR -16 349 1 204 227 0 0 chr13 114420721 114420765 -5324133 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 189 260 219 0 chr13 114423036 114423132 -5321766 + MIR SINE MIR 80 196 -66 307 306 132 7 chr13 114423392 114423536 -5321362 - MIR3 SINE MIR -14 194 33 2166 129 0 0 chr13 114423745 114424055 -5320843 + AluSg SINE Alu 1 310 0 181 222 28 0 chr13 114424172 114424208 -5320690 - L3 LINE CR1 -1534 43 7 2341 143 97 8 chr13 114424685 114425078 -5319820 + MSTA LTR MaLR 1 428 0 9736 146 12 42 chr13 114425080 114426708 -5318190 + MSTA-int LTR MaLR 3 1580 0 2481 106 116 10 chr13 114426708 114427095 -5317803 + MSTA LTR MaLR 1 428 0 1282 203 97 123 chr13 114427333 114427856 -5317042 + MLT1F1 LTR MaLR 56 567 0 204 361 14 0 chr13 114428242 114428314 -5316584 + L2 LINE L2 2243 2315 -999 467 294 28 11 chr13 114428511 114428691 -5316207 + MLT1J1 LTR MaLR 1 183 -263 849 266 177 51 chr13 114428982 114429432 -5315466 - MLT1G1 LTR MaLR -32 535 36 728 173 9 0 chr13 114429432 114429542 -5315356 + AluSx SINE Alu 2 112 -201 3223 99 52 0 chr13 114429542 114429928 -5314970 + MLT2A1 LTR ERVL 1 412 -32 474 18 0 0 chr13 114429928 114429983 -5314915 + (TA)n Simple_repeat Simple_repeat 2 56 0 3223 99 52 0 chr13 114429983 114430018 -5314880 + MLT2A1 LTR ERVL 412 444 0 44816 75 5 3 chr13 114430018 114435659 -5309239 + HERVL-A1 LTR ERVL 1 5654 0 3036 87 3 0 chr13 114435660 114436049 -5308849 + MLT2A1 LTR ERVL 9 398 -46 394 76 106 0 chr13 114436163 114436295 -5308603 + (TA)n Simple_repeat Simple_repeat 1 146 0 2005 114 0 0 chr13 114436311 114436582 -5308316 - MLT2A1 LTR ERVL -40 404 134 546 91 75 18 chr13 114436582 114437214 -5307684 + (TA)n Simple_repeat Simple_repeat 1 668 0 261 98 0 0 chr13 114437223 114437264 -5307634 + MLT2A1 LTR ERVL 363 403 -41 194 0 0 37 chr13 114437318 114437345 -5307553 + (TA)n Simple_repeat Simple_repeat 1 26 0 379 77 0 0 chr13 114437350 114437402 -5307496 + MLT2A1 LTR ERVL 393 444 0 1269 120 16 0 chr13 114437402 114437586 -5307312 + AluSx SINE Alu 107 293 -17 271 229 8 122 chr13 114437639 114437770 -5307128 + MIR SINE MIR 146 261 -1 25 31 0 0 chr13 114438199 114438231 -5306667 + AT_rich Low_complexity Low_complexity 1 32 0 1959 153 153 21 chr13 114439018 114439396 -5305502 + MSTA LTR MaLR 1 428 0 239 300 190 10 chr13 114440326 114440426 -5304472 - MER5A DNA MER1_type -69 120 3 416 272 78 26 chr13 114440961 114441152 -5303746 + MLT1J2 LTR MaLR 24 224 -226 21 0 0 0 chr13 114443647 114443668 -5301230 + AT_rich Low_complexity Low_complexity 1 21 0 1506 207 25 36 chr13 114444650 114445008 -5299890 + MLT1A1 LTR MaLR 1 354 -11 2089 239 51 31 chr13 114445402 114445947 -5298951 + MER74A LTR ERVL 3 558 0 282 29 0 0 chr13 114447068 114447103 -5297795 + (CA)n Simple_repeat Simple_repeat 1 35 0 471 270 101 34 chr13 114449177 114449355 -5295543 - MIR SINE MIR -13 249 60 234 194 16 32 chr13 114449363 114449425 -5295473 - L1P LINE L1 -1618 4528 4468 * 379 75 4 0 chr13 114449406 114449472 -5295426 + L1P LINE L1 5306 5365 -786 331 351 13 33 chr13 114450565 114450716 -5294182 + L1ME LINE L1 1490 1637 -4759 3160 227 12 2 chr13 114450722 114451550 -5293348 - L1PB1 LINE L1 -835 5311 4476 3157 98 0 0 chr13 114451551 114452018 -5292880 + L1PB1 LINE L1 5320 5786 -365 283 220 20 50 chr13 114452022 114452122 -5292776 + (TATG)n Simple_repeat Simple_repeat 3 99 0 2498 96 16 0 chr13 114452122 114452486 -5292412 + L1PB1 LINE L1 5782 6151 0 234 140 41 55 chr13 114452487 114452560 -5292338 + L1MCa LINE L1 1738 1838 -4588 189 0 0 0 chr13 114452578 114452599 -5292299 + (T)n Simple_repeat Simple_repeat 1 21 0 339 314 95 33 chr13 114452700 114453006 -5291892 + L1MCa LINE L1 2097 2421 -4186 432 0 0 0 chr13 114454850 114454898 -5290000 + (TA)n Simple_repeat Simple_repeat 1 48 0 478 267 99 35 chr13 114455164 114455396 -5289502 + MIR SINE MIR 14 260 -2 296 271 123 49 chr13 114459631 114459753 -5285145 - MIR SINE MIR -87 175 45 327 49 0 0 chr13 114460947 114460988 -5283910 + (GA)n Simple_repeat Simple_repeat 1 41 0 272 208 28 38 chr13 114461218 114461324 -5283574 - MLT1J1 LTR MaLR -6 440 336 507 303 38 5 chr13 114461418 114461603 -5283295 - MLT1J1 LTR MaLR -254 192 2 758 262 115 80 chr13 114462415 114462842 -5282056 + L2 LINE L2 2870 3311 -2 2252 101 0 0 chr13 114462858 114463154 -5281744 - AluSq SINE Alu -17 296 1 252 277 38 13 chr13 114463761 114463920 -5280978 + L1M4 LINE L1 4908 5070 -1076 454 273 95 16 chr13 114464209 114464462 -5280436 + L1ME LINE L1 1630 1902 -4494 343 232 36 36 chr13 114464591 114464703 -5280195 + L1ME LINE L1 2068 2179 -4036 1872 172 34 54 chr13 114464714 114464973 -5279925 + MLT2A2 LTR ERVL 1 263 -291 2210 124 0 0 chr13 114464973 114465279 -5279619 - AluSp SINE Alu -7 306 1 1872 172 34 54 chr13 114465279 114465577 -5279321 + MLT2A2 LTR ERVL 263 554 0 457 196 118 20 chr13 114465581 114465734 -5279164 + L1ME LINE L1 2229 2396 -4000 450 222 12 37 chr13 114465726 114465888 -5279010 + L1MB7 LINE L1 6027 6184 0 * 2564 241 67 9 chr13 114465885 114466832 -5278066 + L1ME LINE L1 2341 3341 -2874 287 323 60 9 chr13 114466988 114467205 -5277693 + L1ME LINE L1 5484 5711 -520 264 30 0 0 chr13 114467448 114467481 -5277417 + (TG)n Simple_repeat Simple_repeat 2 34 0 852 154 31 0 chr13 114467920 114468050 -5276848 - AluJb SINE Alu -21 291 158 2033 111 16 33 chr13 114469021 114469327 -5275571 + AluSx SINE Alu 1 301 -11 1135 118 24 0 chr13 114469327 114469497 -5275401 + AluSg/x SINE Alu 132 305 -5 25 0 0 0 chr13 114469884 114469909 -5274989 + AT_rich Low_complexity Low_complexity 1 25 0 2254 101 10 0 chr13 114471973 114472291 -5272607 + AluSq SINE Alu 1 321 0 23 68 0 0 chr13 114473713 114473757 -5271141 + AT_rich Low_complexity Low_complexity 1 44 0 825 153 143 46 chr13 114475229 114475425 -5269473 - MER20 DNA MER1_type -4 215 1 1968 125 11 0 chr13 114476275 114476597 -5268301 + AluSx SINE Alu 1 325 0 192 321 51 82 chr13 114476716 114477031 -5267867 - L2 LINE L2 -36 3236 2932 216 0 0 0 chr13 114477489 114477513 -5267385 + (T)n Simple_repeat Simple_repeat 1 24 0 244 268 0 0 chr13 114478060 114478131 -5266767 - L1MC5 LINE L1 -195 7766 7696 2182 106 13 10 chr13 114479041 114479342 -5265556 + AluY SINE Alu 1 302 -9 2538 47 23 0 chr13 114480177 114480478 -5264420 - AluY SINE Alu -3 308 1 638 220 23 0 chr13 114481401 114481533 -5263365 - MIR SINE MIR -84 178 44 23 33 0 0 chr13 114483408 114483438 -5261460 + AT_rich Low_complexity Low_complexity 1 30 0 307 267 73 53 chr13 114483733 114483883 -5261015 - L1MC/D LINE L1 -777 5534 5382 699 272 25 57 chr13 114484256 114484818 -5260080 - L1MC/D LINE L1 -2529 3686 3143 1406 181 3 35 chr13 114484896 114485206 -5259692 + L1PB4 LINE L1 5833 6132 -24 228 207 30 89 chr13 114485244 114485346 -5259552 - L1MC/D LINE L1 -3171 3044 2950 2226 109 0 3 chr13 114485346 114485650 -5259248 - AluSx SINE Alu -9 303 1 228 207 30 89 chr13 114485650 114485682 -5259216 - L1MC/D LINE L1 -3265 2950 2918 323 322 21 64 chr13 114485875 114486111 -5258787 - L1MC/D LINE L1 -4174 2222 1997 381 238 84 52 chr13 114486572 114486785 -5258113 - L1ME1 LINE L1 -143 6023 5809 980 248 118 36 chr13 114486829 114487297 -5257601 + MLT1F LTR MaLR 37 542 0 677 274 5 0 chr13 114487299 114487485 -5257413 - L1ME1 LINE L1 -403 5763 5577 541 325 75 78 chr13 114487509 114488151 -5256747 - L1MC/D LINE L1 -4910 1295 656 24 0 0 0 chr13 114488713 114488737 -5256161 + AT_rich Low_complexity Low_complexity 1 24 0 448 175 30 0 chr13 114490471 114490637 -5254261 + GA-rich Low_complexity Low_complexity 1 171 0 350 278 97 28 chr13 114491343 114491487 -5253411 - L2 LINE L2 0 3313 3160 1758 131 44 24 chr13 114491982 114492279 -5252619 - AluSx SINE Alu -9 303 1 40 49 0 0 chr13 114492337 114492398 -5252500 + AT_rich Low_complexity Low_complexity 1 61 0 240 350 94 25 chr13 114492507 114492710 -5252188 - MIR SINE MIR 0 262 46 1062 188 9 32 chr13 114493874 114494092 -5250806 + MER20 DNA MER1_type 4 216 -3 244 330 20 50 chr13 114494096 114494296 -5250602 + L2 LINE L2 2699 2892 -422 436 298 111 38 chr13 114494300 114494589 -5250309 + L2 LINE L2 2995 3304 -9 229 208 0 0 chr13 114495190 114495243 -5249655 + MER69 DNA AcHobo 46 98 -2428 23 0 0 0 chr13 114495345 114495368 -5249530 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 114496822 114496849 -5248049 + (T)n Simple_repeat Simple_repeat 1 27 0 234 0 0 0 chr13 114499154 114499180 -5245718 + (T)n Simple_repeat Simple_repeat 1 26 0 222 235 0 0 chr13 114499524 114499575 -5245323 + A-rich Low_complexity Low_complexity 1 51 0 1936 124 32 0 chr13 114500324 114500606 -5244292 - AluSx SINE Alu -21 291 1 328 189 211 0 chr13 114500877 114500967 -5243931 - MER112 DNA MER1_type -1 259 151 223 271 169 42 chr13 114505562 114505680 -5239218 + L2 LINE L2 3137 3269 -3 22 35 0 0 chr13 114505831 114505860 -5239038 + AT_rich Low_complexity Low_complexity 1 29 0 40 0 0 0 chr13 114507164 114507204 -5237694 + AT_rich Low_complexity Low_complexity 1 40 0 1412 208 6 43 chr13 114507218 114507591 -5237307 - AluJb SINE Alu 0 361 1 647 271 113 9 chr13 114508749 114508970 -5235928 + MIR SINE MIR 2 245 -17 2103 117 38 0 chr13 114509778 114510069 -5234829 + AluSq SINE Alu 1 302 -11 3302 161 86 36 chr13 114511084 114511688 -5233210 - MER51A LTR ERV1 0 634 1 22 0 0 0 chr13 114512378 114512400 -5232498 + AT_rich Low_complexity Low_complexity 1 22 0 218 0 0 86 chr13 114513063 114513098 -5231800 + (CGGGGG)n Simple_repeat Simple_repeat 2 33 0 26 50 0 0 chr13 114513669 114513709 -5231189 + GC_rich Low_complexity Low_complexity 1 40 0 1843 195 42 44 chr13 114514168 114514578 -5230320 + LTR2 LTR ERV1 41 449 0 1015 113 0 0 chr13 114514840 114514973 -5229925 + AluSc SINE Alu 1 133 -176 2008 115 3 7 chr13 114514973 114515300 -5229598 + AluSx SINE Alu 1 326 0 30 27 0 0 chr13 114515652 114515689 -5229209 + AT_rich Low_complexity Low_complexity 1 37 0 208 359 13 13 chr13 114515922 114516000 -5228898 + MIR SINE MIR 1 78 -184 209 328 129 0 chr13 114516269 114516385 -5228513 + MIR SINE MIR 106 236 -26 404 232 83 85 chr13 114516677 114517206 -5227692 + MLT1G LTR MaLR 1 547 -8 189 0 0 0 chr13 114517248 114517269 -5227629 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 594 305 53 21 chr13 114517351 114517636 -5227262 + MLT1G-int LTR MaLR 285 578 -793 1966 141 3 7 chr13 114517703 114517994 -5226904 + AluSg SINE Alu 4 293 -17 386 85 17 0 chr13 114517994 114518053 -5226845 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 817 236 6 12 chr13 114518432 114518593 -5226305 + FAM SINE Alu 5 164 -11 481 332 76 24 chr13 114519261 114519589 -5225309 + MLT1G LTR MaLR 52 396 -194 285 253 10 50 chr13 114519636 114519735 -5225163 + MLT1G LTR MaLR 496 590 0 235 308 167 13 chr13 114519850 114520006 -5224892 + MIR SINE MIR 72 251 -11 241 319 124 2 chr13 114520065 114520194 -5224704 + MER5A DNA MER1_type 4 136 -42 206 328 0 0 chr13 114521562 114521620 -5223278 - L2 LINE L2 0 3313 3256 201 265 61 30 chr13 114521975 114522107 -5222791 - MIR SINE MIR -110 152 17 312 123 123 31 chr13 114522385 114522450 -5222448 + MADE1 DNA Mariner 10 80 0 711 47 0 0 chr13 114522480 114522566 -5222332 + L1PA5 LINE L1 6066 6151 -3 618 222 199 0 chr13 114523109 114523280 -5221618 + MER3 DNA MER1_type 1 205 -4 236 246 16 0 chr13 114524022 114524083 -5220815 + L1MC4 LINE L1 6653 6714 -1328 973 167 26 53 chr13 114524949 114525021 -5219877 + L1MA8 LINE L1 6070 6142 -149 2440 97 0 0 chr13 114525021 114525332 -5219566 + AluSq SINE Alu 1 311 -2 973 167 26 53 chr13 114525332 114525486 -5219412 + L1MA8 LINE L1 6142 6290 -1 367 266 186 52 chr13 114525660 114525912 -5218986 + L2 LINE L2 3020 3305 -8 23 0 0 0 chr13 114526374 114526397 -5218501 + AT_rich Low_complexity Low_complexity 1 23 0 465 300 117 21 chr13 114529846 114530086 -5214812 + L3 LINE CR1 1306 1568 -9 26 30 0 0 chr13 114531081 114531114 -5213784 + AT_rich Low_complexity Low_complexity 1 33 0 2293 81 7 29 chr13 114531389 114531696 -5213202 - AluSq SINE Alu -13 300 1 233 305 0 32 chr13 114531951 114532046 -5212852 - MER5A DNA MER1_type -78 111 20 1335 214 7 4 chr13 114533030 114533306 -5211592 - AluJo SINE Alu -16 296 20 201 340 89 56 chr13 114535769 114536072 -5208826 - L2 LINE L2 -46 3226 2914 225 122 0 0 chr13 114536557 114536598 -5208300 + LTR66 LTR ERVL 395 435 -175 351 250 23 0 chr13 114536601 114536689 -5208209 - L1MC4 LINE L1 -1339 6703 6614 343 300 0 0 chr13 114536611 114536701 -5208197 + L1MC4 LINE L1 6614 6703 -1339 * 224 30 30 0 chr13 114538098 114538131 -5206767 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 252 0 0 0 chr13 114538822 114538850 -5206048 + (T)n Simple_repeat Simple_repeat 1 28 0 346 333 14 14 chr13 114539556 114539694 -5205204 - MIR3 SINE MIR -35 173 36 469 245 161 26 chr13 114539730 114539885 -5205013 - MER5A DNA MER1_type -7 182 7 369 168 11 21 chr13 114540716 114540811 -5204087 + CT-rich Low_complexity Low_complexity 2 95 0 611 174 17 17 chr13 114540817 114540932 -5203966 - L1MB1 LINE L1 -6 6162 6048 2071 103 43 0 chr13 114541338 114541619 -5203279 - AluSp SINE Alu -20 293 1 26 82 0 0 chr13 114541622 114541683 -5203215 + AT_rich Low_complexity Low_complexity 1 61 0 2436 78 0 0 chr13 114542107 114542402 -5202496 + AluY SINE Alu 1 295 -16 308 75 0 38 chr13 114543078 114543131 -5201767 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 193 385 55 0 chr13 114543133 114543242 -5201656 - L2 LINE L2 0 3272 3158 241 340 154 32 chr13 114544519 114544766 -5200132 + L2 LINE L2 2571 2847 -467 259 217 0 0 chr13 114544838 114544884 -5200014 + L2 LINE L2 3227 3272 0 306 253 12 12 chr13 114544989 114545072 -5199826 - MER106B DNA MER1_type -935 124 42 263 47 0 93 chr13 114545093 114545136 -5199762 + MER106B DNA MER1_type 1018 1056 -3 195 42 0 0 chr13 114545809 114545833 -5199065 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 332 275 63 0 chr13 114546021 114546163 -5198735 + L1ME4a LINE L1 5966 6116 -5 320 0 0 24 chr13 114546248 114546289 -5198609 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 188 298 71 24 chr13 114547065 114547149 -5197749 + MIR3 SINE MIR 85 172 -36 28 29 0 0 chr13 114548477 114548512 -5196386 + AT_rich Low_complexity Low_complexity 1 35 0 2139 132 0 3 chr13 114548601 114548904 -5195994 - AluSq SINE Alu -11 302 1 336 323 36 61 chr13 114549007 114549286 -5195612 - L2 LINE L2 -26 3287 3016 234 300 0 0 chr13 114549527 114549587 -5195311 + CT-rich Low_complexity Low_complexity 4 63 0 21 36 0 0 chr13 114550181 114550209 -5194689 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 114550927 114550948 -5193950 + AT_rich Low_complexity Low_complexity 1 21 0 341 134 0 30 chr13 114551567 114551634 -5193264 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 214 200 0 0 chr13 114551986 114552026 -5192872 + A-rich Low_complexity Low_complexity 1 40 0 1361 224 35 49 chr13 114554461 114554632 -5190266 + MLT1A1 LTR MaLR 1 173 -192 8963 111 12 2 chr13 114554632 114555906 -5188992 + HSMAR1 DNA Mariner 1 1287 0 1361 224 35 49 chr13 114555906 114556104 -5188794 + MLT1A1 LTR MaLR 173 365 0 25 31 0 0 chr13 114556547 114556579 -5188319 + AT_rich Low_complexity Low_complexity 1 32 0 2146 104 4 0 chr13 114556766 114557045 -5187853 - AluSq SINE Alu -33 280 1 279 326 22 11 chr13 114557144 114557233 -5187665 + MIR SINE MIR 20 109 -99 783 231 165 17 chr13 114557613 114558020 -5186878 + MLT1C LTR MaLR 1 467 0 272 211 28 28 chr13 114558028 114558099 -5186799 - MIR SINE MIR -187 75 5 808 275 178 37 chr13 114559040 114559167 -5185731 - L2 LINE L2 -2 3311 3203 2963 61 69 3 chr13 114559167 114559559 -5185339 + L1PA7 LINE L1 5729 6146 -8 808 275 178 37 chr13 114559559 114559582 -5185316 - L2 LINE L2 -110 3203 3185 1569 203 14 7 chr13 114559582 114559873 -5185025 + AluJo SINE Alu 1 293 -19 808 275 178 37 chr13 114559873 114560519 -5184379 - L2 LINE L2 -128 3185 2381 3021 75 29 0 chr13 114561356 114561770 -5183128 - L1PA14 LINE L1 -2 6159 5734 243 329 14 0 chr13 114562638 114562711 -5182187 - L2 LINE L2 -1557 1757 1684 2178 103 0 13 chr13 114564578 114564919 -5179979 + AluSx SINE Alu 1 312 0 2219 104 3 0 chr13 114566440 114566729 -5178169 - AluSq SINE Alu -23 290 1 250 349 95 32 chr13 114568235 114568573 -5176325 + L2 LINE L2 1977 2335 -979 29 60 0 0 chr13 114569394 114569444 -5175454 + AT_rich Low_complexity Low_complexity 1 50 0 2388 87 3 3 chr13 114570679 114570989 -5173909 - AluSq SINE Alu 0 313 4 293 345 26 61 chr13 114571051 114571280 -5173618 + L2 LINE L2 2167 2387 -927 1736 118 0 0 chr13 114571312 114571540 -5173358 - AluSx SINE Alu -84 228 1 184 368 44 18 chr13 114571540 114571654 -5173244 + L2 LINE L2 2381 2497 -817 617 257 37 19 chr13 114571774 114571988 -5172910 + MER20 DNA MER1_type 2 219 0 842 201 126 0 chr13 114572005 114572204 -5172694 - MER58A DNA MER1_type 0 224 1 212 234 31 0 chr13 114572985 114573049 -5171849 + (TA)n Simple_repeat Simple_repeat 2 67 0 2327 113 0 3 chr13 114573918 114574229 -5170669 + AluSg SINE Alu 1 310 0 186 103 0 0 chr13 114574308 114574337 -5170561 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 1929 150 56 0 chr13 114574337 114574676 -5170222 - L1PA16 LINE L1 -14 6152 5795 3062 279 81 13 chr13 114574746 114575647 -5169251 + L1ME2 LINE L1 35 1079 -5317 1653 158 24 50 chr13 114575647 114575945 -5168953 - AluSx SINE Alu -22 290 1 3062 279 81 13 chr13 114575945 114576540 -5168358 + L1ME2 LINE L1 1079 1632 -4764 862 240 5 14 chr13 114576546 114576763 -5168135 + L1MC1 LINE L1 6101 6315 -18 1861 138 0 86 chr13 114576773 114577098 -5167800 + AluSx SINE Alu 1 297 -15 836 247 170 34 chr13 114577696 114578250 -5166648 + L1ME2 LINE L1 3064 3692 -2523 * 1102 231 202 13 chr13 114578231 114578419 -5166479 + L1ME2 LINE L1 5262 5413 -820 2163 106 48 0 chr13 114578419 114578711 -5166187 + AluSg SINE Alu 1 306 -4 1102 231 202 13 chr13 114578711 114579170 -5165728 + L1ME2 LINE L1 5413 6027 -206 716 165 118 34 chr13 114579174 114579444 -5165454 + THE1C LTR MaLR 1 292 -136 240 121 106 30 chr13 114579465 114579531 -5165367 + THE1C LTR MaLR 116 186 -189 * 1077 175 60 20 chr13 114579526 114579777 -5165121 + THE1C LTR MaLR 115 375 0 2028 116 0 36 chr13 114580683 114580985 -5163913 + AluSg SINE Alu 1 291 -19 212 260 0 0 chr13 114581139 114581189 -5163709 + L2 LINE L2 3263 3312 -1 306 67 0 0 chr13 114581474 114581519 -5163379 + (TG)n Simple_repeat Simple_repeat 2 46 0 265 274 284 0 chr13 114583718 114583820 -5161078 - L2 LINE L2 -5 3267 3137 440 267 8 8 chr13 114583880 114584011 -5160887 - MER94 DNA DNA 0 134 4 1070 173 55 128 chr13 114584235 114584656 -5160242 + MLT1B LTR MaLR 1 390 0 2255 106 3 3 chr13 114585203 114585504 -5159394 + AluSq SINE Alu 1 301 -12 511 298 65 6 chr13 114586650 114586818 -5158080 + MIR SINE MIR 79 256 -6 215 196 39 0 chr13 114587064 114587115 -5157783 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 642 260 46 0 chr13 114587276 114587472 -5157426 + MER58A DNA MER1_type 20 224 0 395 291 73 34 chr13 114588799 114589211 -5155687 + MLT1H LTR MaLR 114 536 -6 236 164 98 0 chr13 114589551 114589612 -5155286 + MLT1I LTR MaLR 315 381 -28 693 185 24 22 chr13 114589820 114590034 -5154864 - MER58 DNA MER1_type 0 2420 1 699 157 0 0 chr13 114590403 114590518 -5154380 - MLT1A2 LTR MaLR 0 374 260 226 254 0 0 chr13 114590544 114590603 -5154295 - MLT1A2 LTR MaLR -265 125 67 6187 167 43 3 chr13 114592259 114593432 -5151466 + Tigger1 DNA MER2_type 20 1240 -1178 5763 56 10 0 chr13 114593442 114594169 -5150729 - L1PA8 LINE L1 -13 6159 5426 2389 106 11 0 chr13 114594170 114594549 -5150349 + L1P LINE L1 4990 5372 -774 6336 150 48 2 chr13 114594549 114595705 -5149193 + Tigger1 DNA MER2_type 1210 2418 0 252 292 204 0 chr13 114595708 114595821 -5149077 - MER5A DNA MER1_type -1 188 53 797 226 27 11 chr13 114595920 114596106 -5148792 + MER5A DNA MER1_type 1 189 0 186 363 20 20 chr13 114596245 114596347 -5148551 - MER5A DNA MER1_type -29 160 59 423 268 44 97 chr13 114596975 114597203 -5147695 - L3 LINE CR1 -546 1031 816 758 218 79 42 chr13 114597907 114598123 -5146775 - MER58A DNA MER1_type 0 224 1 258 32 0 0 chr13 114598818 114598849 -5146049 + (TG)n Simple_repeat Simple_repeat 2 32 0 471 192 19 26 chr13 114599056 114599212 -5145686 + GA-rich Low_complexity Low_complexity 3 157 0 207 0 0 0 chr13 114602308 114602331 -5142567 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 228 348 52 26 chr13 114602578 114602693 -5142205 + MIR SINE MIR 110 227 -35 3362 221 103 23 chr13 114602866 114604110 -5140788 + L1MC4 LINE L1 6493 7714 -94 441 0 0 0 chr13 114604114 114604163 -5140735 + (CA)n Simple_repeat Simple_repeat 2 50 0 249 171 24 61 chr13 114604168 114604250 -5140648 + GA-rich Low_complexity Low_complexity 2 80 0 249 282 64 0 chr13 114604251 114604329 -5140569 + L1MC4 LINE L1 7960 8042 0 25 51 0 0 chr13 114604496 114604535 -5140363 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr13 114605106 114605126 -5139772 + (T)n Simple_repeat Simple_repeat 1 20 0 981 240 35 5 chr13 114605477 114605677 -5139221 + MER58A DNA MER1_type 4 209 -15 351 0 0 0 chr13 114605888 114605927 -5138971 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 255 10 31 chr13 114606465 114606563 -5138335 + (TA)n Simple_repeat Simple_repeat 1 96 0 585 226 193 0 chr13 114608699 114608880 -5136018 + MER20 DNA MER1_type 1 216 -3 275 312 88 0 chr13 114608968 114609093 -5135805 + MIR SINE MIR 79 214 -48 1846 122 0 0 chr13 114609093 114609338 -5135560 + AluSg SINE Alu 1 245 -65 188 354 44 39 chr13 114610029 114610210 -5134688 + L2 LINE L2 1218 1399 -1915 213 121 0 0 chr13 114610658 114610691 -5134207 + (CA)n Simple_repeat Simple_repeat 2 34 0 218 316 0 13 chr13 114610828 114610904 -5133994 + L2 LINE L2 3235 3309 -4 204 40 0 0 chr13 114611555 114611580 -5133318 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2146 113 3 13 chr13 114611917 114612219 -5132679 + AluSx SINE Alu 1 299 -13 1103 185 46 0 chr13 114612306 114612522 -5132376 - L1MD1 LINE L1 -8 6234 6009 6107 240 63 31 chr13 114612523 114613664 -5131234 - L1M4 LINE L1 -1287 4859 3756 279 0 0 0 chr13 114613664 114613695 -5131203 + (TC)n Simple_repeat Simple_repeat 2 32 0 231 36 0 0 chr13 114613694 114613722 -5131176 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 6107 240 63 31 chr13 114613695 114614832 -5130066 - L1M4 LINE L1 -2390 3756 2536 885 276 88 48 chr13 114614835 114615187 -5129711 - L1MDa LINE L1 -5531 1009 644 23 97 0 0 chr13 114615282 114615354 -5129544 + AT_rich Low_complexity Low_complexity 1 72 0 2059 176 90 29 chr13 114615416 114615906 -5128992 - MLT2B1 LTR ERVL 0 520 1 228 185 0 0 chr13 114616355 114616409 -5128489 + CT-rich Low_complexity Low_complexity 2 55 0 402 335 21 32 chr13 114618067 114618255 -5126643 + MER5A DNA MER1_type 2 187 -2 2071 145 0 0 chr13 114618390 114618679 -5126219 - AluSx SINE Alu -23 289 1 185 239 195 18 chr13 114619105 114619218 -5125680 + MIR3 SINE MIR 75 207 -1 2135 122 43 25 chr13 114619459 114619827 -5125071 - THE1C LTR MaLR 0 375 1 423 309 110 44 chr13 114620022 114620504 -5124394 + LTR33A LTR ERVL 2 515 -8 1846 141 11 0 chr13 114622719 114622995 -5121903 + AluSq SINE Alu 31 309 -4 1950 91 46 4 chr13 114624715 114624978 -5119920 + AluSq SINE Alu 40 313 0 208 219 10 31 chr13 114625767 114625863 -5119035 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 185 299 95 27 chr13 114626368 114626515 -5118383 - MIR SINE MIR -73 189 33 1342 179 144 61 chr13 114626674 114627103 -5117795 + MLT1C LTR MaLR 1 465 -2 192 314 139 0 chr13 114627304 114627390 -5117508 - L2 LINE L2 -247 3025 2928 613 258 93 57 chr13 114627508 114627936 -5116962 - MLT1D LTR MaLR -5 462 1 26 50 0 0 chr13 114629946 114629986 -5114912 + AT_rich Low_complexity Low_complexity 1 40 0 458 198 41 3 chr13 114629989 114630310 -5114588 + (TA)n Simple_repeat Simple_repeat 1 333 0 324 300 0 0 chr13 114630312 114630402 -5114496 + L1MC4 LINE L1 6613 6702 -1340 * 370 301 0 0 chr13 114630379 114630472 -5114426 - L1MC4 LINE L1 -1339 6703 6611 637 167 26 0 chr13 114630490 114630844 -5114054 + (TA)n Simple_repeat Simple_repeat 1 363 0 309 214 0 78 chr13 114630858 114630961 -5113937 + L1MC4 LINE L1 6611 6705 -1337 307 162 27 18 chr13 114630963 114631074 -5113824 + (TA)n Simple_repeat Simple_repeat 2 113 0 303 227 21 52 chr13 114631080 114631177 -5113721 + L1MC4 LINE L1 6612 6705 -1337 194 156 22 0 chr13 114631184 114631229 -5113669 + (TA)n Simple_repeat Simple_repeat 1 46 0 304 265 0 41 chr13 114631229 114631327 -5113571 + L1MC4 LINE L1 6612 6705 -1337 350 159 56 0 chr13 114631333 114631459 -5113439 + (TA)n Simple_repeat Simple_repeat 2 134 0 308 275 11 11 chr13 114631459 114631550 -5113348 - L1MC4 LINE L1 -1339 6703 6613 * 330 233 33 11 chr13 114631531 114631621 -5113277 + L1MC4 LINE L1 6614 6705 -1337 224 77 26 0 chr13 114631622 114631661 -5113237 + (TA)n Simple_repeat Simple_repeat 1 40 0 305 252 23 84 chr13 114631663 114631794 -5113104 + L1MC4 LINE L1 6580 6702 -1340 229 234 47 16 chr13 114634311 114634375 -5110523 + L2 LINE L2 3247 3312 -1 1621 181 6 32 chr13 114634592 114634907 -5109991 + AluJb SINE Alu 1 307 -5 36789 78 33 8 chr13 114634917 114640908 -5103990 + L1PA6 LINE L1 11 6154 0 225 154 0 0 chr13 114641066 114641105 -5103793 + (TA)n Simple_repeat Simple_repeat 1 39 0 1383 80 5 0 chr13 114641218 114641406 -5103492 - Charlie3 DNA MER1_type -9 2701 2513 * 1463 153 63 8 chr13 114641401 114641655 -5103243 - Charlie3 DNA MER1_type -2442 268 1 2273 99 0 16 chr13 114642059 114642412 -5102486 + AluSc SINE Alu 1 348 0 219 25 75 0 chr13 114642895 114642935 -5101963 + (TA)n Simple_repeat Simple_repeat 2 44 0 212 294 56 0 chr13 114645009 114645152 -5099746 + (TATAG)n Simple_repeat Simple_repeat 4 154 0 266 299 54 0 chr13 114645169 114645336 -5099562 + (CAGTA)n Simple_repeat Simple_repeat 5 180 0 254 293 54 0 chr13 114645373 114645590 -5099308 + (TATAG)n Simple_repeat Simple_repeat 1 228 0 1200 258 41 104 chr13 114646076 114646284 -5098614 + L2 LINE L2 1604 1824 -1490 432 0 0 0 chr13 114646284 114646332 -5098566 + (CA)n Simple_repeat Simple_repeat 2 49 0 1200 258 41 104 chr13 114646332 114646458 -5098440 + L2 LINE L2 1824 1956 -1358 2498 65 0 0 chr13 114646458 114646765 -5098133 - AluY SINE Alu -4 307 1 1200 258 41 104 chr13 114646765 114647092 -5097806 + L2 LINE L2 1956 2224 -1090 2261 123 0 0 chr13 114647332 114647641 -5097257 + AluSx SINE Alu 1 309 -3 24 53 0 0 chr13 114649347 114649385 -5095513 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 114650548 114650576 -5094322 + AT_rich Low_complexity Low_complexity 1 28 0 610 229 65 18 chr13 114651656 114651826 -5093072 - MER5B DNA MER1_type 0 178 1 216 350 0 0 chr13 114652614 114652717 -5092181 + T-rich Low_complexity Low_complexity 1 103 0 29 60 0 0 chr13 114652755 114652805 -5092093 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr13 114653078 114653099 -5091799 + AT_rich Low_complexity Low_complexity 1 21 0 964 290 101 43 chr13 114654822 114655336 -5089562 + MLT1G LTR MaLR 47 590 0 259 224 30 30 chr13 114655482 114655549 -5089349 + L2 LINE L2 3247 3313 0 2237 100 3 0 chr13 114656014 114656315 -5088583 - AluSq SINE Alu -11 302 1 438 20 0 0 chr13 114656412 114656463 -5088435 + (TTTCC)n Simple_repeat Simple_repeat 5 55 0 597 94 0 0 chr13 114656467 114656552 -5088346 + (TC)n Simple_repeat Simple_repeat 1 85 0 1729 185 10 10 chr13 114656552 114656860 -5088038 - AluJb SINE Alu -1 311 4 523 261 78 67 chr13 114657130 114657620 -5087278 - L1MC5 LINE L1 -53 7908 7414 2440 18 4 0 chr13 114657705 114657985 -5086913 - L1PA4 LINE L1 -429 5726 5446 3736 34 0 0 chr13 114657985 114658431 -5086467 + L1PA4 LINE L1 5707 6153 -2 1496 203 79 6 chr13 114658465 114658805 -5086093 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr13 114659516 114659537 -5085361 + AT_rich Low_complexity Low_complexity 1 21 0 671 154 0 8 chr13 114661732 114661855 -5083043 - L1P LINE L1 -850 5296 5175 418 149 53 11 chr13 114661855 114661949 -5082949 + L1PA15 LINE L1 6067 6164 -1 346 250 148 9 chr13 114663571 114663679 -5081219 + HAL1b LINE L1 1162 1284 -64 338 42 21 0 chr13 114663688 114663736 -5081162 + (TG)n Simple_repeat Simple_repeat 1 49 0 210 342 107 46 chr13 114663782 114663978 -5080920 + MIR SINE MIR 27 234 -28 488 292 59 14 chr13 114664075 114664294 -5080604 + L1ME LINE L1 5510 5738 -383 298 311 44 30 chr13 114666873 114667008 -5077890 - MIR SINE MIR -116 146 10 2297 102 3 3 chr13 114667225 114667530 -5077368 - AluSp SINE Alu -6 307 3 2700 98 0 6 chr13 114667615 114667981 -5076917 + THE1B LTR MaLR 1 364 0 199 372 16 25 chr13 114671130 114671251 -5073647 - MIR SINE MIR -108 154 35 759 299 16 19 chr13 114671498 114671809 -5073089 - L1MA9 LINE L1 -30 6282 5973 285 261 26 11 chr13 114672087 114672178 -5072720 - MLT1H LTR MaLR -13 577 443 584 196 166 18 chr13 114672229 114672392 -5072506 - MLT1H LTR MaLR -221 328 142 667 159 0 8 chr13 114673739 114673865 -5071033 - L1P LINE L1 -847 5299 5175 558 91 0 0 chr13 114673865 114673942 -5070956 + L1PA13 LINE L1 6068 6144 -19 346 250 148 9 chr13 114675636 114675744 -5069154 + HAL1b LINE L1 1162 1284 -64 320 43 22 0 chr13 114675753 114675799 -5069099 + (TG)n Simple_repeat Simple_repeat 1 47 0 210 342 107 46 chr13 114675845 114676041 -5068857 + MIR SINE MIR 27 234 -28 488 292 59 14 chr13 114676138 114676357 -5068541 + L1ME LINE L1 5510 5738 -383 298 311 44 30 chr13 114678936 114679071 -5065827 - MIR SINE MIR -116 146 10 2289 102 3 3 chr13 114679288 114679592 -5065306 - AluSp SINE Alu -7 306 3 2700 98 0 6 chr13 114679677 114680043 -5064855 + THE1B LTR MaLR 1 364 0 199 372 16 25 chr13 114683192 114683313 -5061585 - MIR SINE MIR -108 154 35 759 299 16 19 chr13 114683560 114683871 -5061027 - L1MA9 LINE L1 -30 6282 5973 285 261 26 11 chr13 114684149 114684240 -5060658 - MLT1H LTR MaLR -13 577 443 1081 227 110 17 chr13 114684291 114684591 -5060307 - MLT1H LTR MaLR -221 328 1 240 264 19 75 chr13 114684647 114684753 -5060145 - L2 LINE L2 -1 3312 3213 502 299 27 7 chr13 114684914 114685061 -5059837 + MIR SINE MIR 20 169 -93 467 276 103 73 chr13 114686534 114687056 -5057842 + L1ME LINE L1 2922 3459 -2687 338 288 171 32 chr13 114687111 114688148 -5056750 + L1ME LINE L1 3524 4704 -1442 266 362 55 17 chr13 114688529 114688764 -5056134 + L1ME LINE L1 5622 5865 -305 186 103 0 0 chr13 114691521 114691550 -5053348 + (TG)n Simple_repeat Simple_repeat 2 30 0 317 297 0 0 chr13 114691670 114691744 -5053154 + L2 LINE L2 3235 3308 -5 503 382 40 23 chr13 114691755 114692306 -5052592 + L2 LINE L2 2710 3270 -2 1822 169 17 3 chr13 114692469 114692770 -5052128 + AluJb SINE Alu 1 305 -7 21 36 0 0 chr13 114693858 114693886 -5051012 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr13 114693916 114693963 -5050935 + AT_rich Low_complexity Low_complexity 1 47 0 34 42 0 0 chr13 114695246 114695294 -5049604 + AT_rich Low_complexity Low_complexity 1 48 0 721 131 0 83 chr13 114695963 114696108 -5048790 + FLAM_C SINE Alu 1 133 0 266 275 87 47 chr13 114696179 114696328 -5048570 + HAL1b LINE L1 742 896 -452 446 300 175 36 chr13 114696644 114697267 -5047631 - L2 LINE L2 0 3313 2562 320 285 92 15 chr13 114697479 114697609 -5047289 + L2 LINE L2 1066 1205 -2109 1312 283 50 41 chr13 114697824 114698064 -5046834 + MLT1H1 LTR MaLR 1 237 -318 1809 170 42 25 chr13 114698064 114698422 -5046476 - THE1B LTR MaLR 0 364 1 11023 106 18 8 chr13 114698422 114699986 -5044912 - THE1B-int LTR MaLR 0 1580 1 1994 142 42 36 chr13 114699986 114700346 -5044552 - THE1B LTR MaLR 0 364 3 1312 283 50 41 chr13 114700346 114700640 -5044258 + MLT1H1 LTR MaLR 236 542 -13 266 274 0 14 chr13 114700650 114700723 -5044175 + MLT1H1-int LTR MaLR 26 97 -1274 813 174 75 0 chr13 114701026 114701187 -5043711 - LTR64 LTR ERVK 0 558 386 2362 94 55 0 chr13 114701189 114701550 -5043348 + L1PA14 LINE L1 5781 6161 0 2220 114 0 3 chr13 114701685 114701991 -5042907 + AluSq SINE Alu 1 305 -8 566 330 85 47 chr13 114702552 114703033 -5041865 + L2 LINE L2 2780 3271 -1 910 339 33 25 chr13 114704156 114704551 -5040347 + MLT1E LTR MaLR 22 419 -174 606 310 38 51 chr13 114704652 114704968 -5039930 + L1ME LINE L1 347 658 -5461 248 243 194 0 chr13 114705792 114705895 -5039003 - L2 LINE L2 -871 2443 2321 310 283 85 66 chr13 114706026 114706537 -5038361 + MER65A LTR ERV1 2 445 0 229 350 8 0 chr13 114706543 114706660 -5038238 - L1M4 LINE L1 -2505 3641 3524 1082 291 69 13 chr13 114706824 114707484 -5037414 + L2 LINE L2 2616 3309 -4 496 234 5 41 chr13 114707484 114707681 -5037217 + L1ME LINE L1 3777 3966 -2163 324 284 166 6 chr13 114707681 114707850 -5037048 + L1ME LINE L1 4495 4690 -1439 616 263 10 21 chr13 114707955 114708149 -5036749 - L1M2 LINE L1 -2508 4340 4149 1723 234 16 0 chr13 114708151 114708522 -5036376 - MSTB LTR MaLR -49 377 1 3152 195 24 6 chr13 114708522 114709143 -5035755 - MSTB-int LTR MaLR 0 1651 1020 4507 261 65 67 chr13 114709151 114710728 -5034170 - L1M2 LINE L1 -2702 4146 2571 2245 119 0 0 chr13 114710728 114711023 -5033875 + AluSx SINE Alu 1 295 -17 4507 261 65 67 chr13 114711023 114711764 -5033134 - L1M2 LINE L1 -4277 2571 1830 527 336 90 25 chr13 114711822 114712176 -5032722 + L1ME LINE L1 5337 5713 -391 39 74 0 0 chr13 114712245 114712326 -5032572 + AT_rich Low_complexity Low_complexity 1 81 0 1205 95 58 0 chr13 114712474 114712663 -5032235 + L1PA3 LINE L1 5955 6154 -1 27 0 0 0 chr13 114712663 114712690 -5032208 + AT_rich Low_complexity Low_complexity 1 27 0 1551 176 32 21 chr13 114712697 114712981 -5031917 - AluJo SINE Alu -25 287 1 21 0 0 0 chr13 114713112 114713133 -5031765 + AT_rich Low_complexity Low_complexity 1 21 0 2079 112 13 35 chr13 114713135 114713448 -5031450 + AluSq SINE Alu 3 308 -5 946 214 15 15 chr13 114714035 114714236 -5030662 - AluJo SINE Alu -111 201 1 217 194 16 16 chr13 114714238 114714300 -5030598 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 563 247 48 48 chr13 114714302 114714529 -5030369 + L1ME LINE L1 5321 5547 -617 806 196 7 0 chr13 114714846 114714994 -5029904 - AluJb SINE Alu -1 311 163 667 0 0 0 chr13 114715126 114715201 -5029697 + tRNA-Val-GTG tRNA tRNA 1 75 -1 695 12 0 0 chr13 114715520 114715602 -5029296 - tRNA-Leu-CTT tRNA tRNA -3 82 1 2159 82 19 0 chr13 114715967 114716235 -5028663 - AluSg SINE Alu -37 273 1 493 211 26 9 chr13 114716265 114716379 -5028519 - L1M4 LINE L1 -1286 4860 4745 487 100 22 0 chr13 114716489 114716579 -5028319 + AluSg/x SINE Alu 217 308 -1 591 91 0 0 chr13 114716603 114716680 -5028218 - AluJ/FLAM SINE Alu -233 79 3 849 232 103 34 chr13 114716683 114716881 -5028017 - L1M4 LINE L1 -1885 4261 4078 3615 123 23 58 chr13 114716881 114716954 -5027944 - MER41B LTR ERV1 0 635 561 1984 118 0 25 chr13 114716954 114717234 -5027664 + AluSq SINE Alu 21 293 -20 3615 123 23 58 chr13 114717234 114717283 -5027615 - MER41B LTR ERV1 -74 561 512 2731 35 3 6 chr13 114717283 114717596 -5027302 + AluSx SINE Alu 1 312 0 3615 123 23 58 chr13 114717596 114718130 -5026768 - MER41B LTR ERV1 -123 512 1 849 232 103 34 chr13 114718130 114718280 -5026618 - L1M4 LINE L1 -2068 4078 3889 595 176 0 42 chr13 114718284 114718426 -5026472 + L1MA9 LINE L1 5983 6118 -194 1202 89 0 6 chr13 114718433 114718590 -5026308 + AluSg/x SINE Alu 149 304 -8 603 27 0 0 chr13 114721207 114721280 -5023618 + tRNA-Thr-ACA tRNA tRNA 1 73 -3 618 0 0 0 chr13 114723915 114723987 -5020911 + tRNA-Pro-CCA tRNA tRNA 1 72 -3 651 0 0 0 chr13 114724353 114724426 -5020472 + tRNA-Val-GTT tRNA tRNA 1 73 -3 2459 84 3 0 chr13 114724439 114724750 -5020148 - AluSp SINE Alu -1 312 1 701 0 0 0 chr13 114725061 114725143 -5019755 - tRNA-Leu-CTT tRNA tRNA -3 82 1 226 197 0 30 chr13 114725417 114725483 -5019415 + A-rich Low_complexity Low_complexity 2 65 0 1263 148 86 0 chr13 114725485 114725694 -5019204 + AluJb SINE Alu 85 311 -1 548 236 36 121 chr13 114725757 114726062 -5018836 + L1ME3A LINE L1 5681 5959 -211 553 197 16 33 chr13 114729885 114730007 -5014891 - FRAM SINE Alu -23 153 34 739 234 58 5 chr13 114730570 114730758 -5014140 + MER20 DNA MER1_type 17 214 -5 2171 93 21 7 chr13 114731284 114731601 -5013297 + AluSx SINE Alu 1 312 0 1927 143 24 7 chr13 114732527 114732814 -5012084 + AluSq SINE Alu 1 292 -21 2326 99 7 0 chr13 114732831 114733124 -5011774 + AluY SINE Alu 1 295 -16 1375 85 0 0 chr13 114733136 114733301 -5011597 + AluSx SINE Alu 1 165 -147 558 149 56 19 chr13 114733465 114733572 -5011326 - FLAM_C SINE Alu -19 124 14 2228 89 31 0 chr13 114733604 114733896 -5011002 + AluSp SINE Alu 1 301 -12 2028 113 17 7 chr13 114733911 114734211 -5010687 + AluSx SINE Alu 9 311 -1 1656 113 31 35 chr13 114735338 114735594 -5009304 - AluSq SINE Alu -58 255 1 2109 103 0 30 chr13 114737229 114737529 -5007369 + AluSx SINE Alu 3 293 -19 266 253 50 61 chr13 114738019 114738118 -5006780 + MIR SINE MIR 125 222 -40 299 258 0 0 chr13 114738135 114738201 -5006697 - L2 LINE L2 -23 3249 3184 210 188 0 42 chr13 114739186 114739234 -5005664 + (CCCCG)n Simple_repeat Simple_repeat 5 50 0 25 31 0 0 chr13 114739713 114739745 -5005153 + GC_rich Low_complexity Low_complexity 1 32 0 2738 10 10 0 chr13 114740140 114740436 -5004462 + AluY SINE Alu 1 299 -12 880 235 92 7 chr13 114740765 114741046 -5003852 - L1M4 LINE L1 -994 5152 4848 2083 137 0 0 chr13 114741056 114741355 -5003543 + AluSx SINE Alu 12 310 -2 311 214 39 29 chr13 114741365 114741468 -5003430 + L1MD2 LINE L1 5219 5322 -824 403 196 9 10 chr13 114741533 114741631 -5003267 + AluS SINE Alu 1 71 -231 4282 187 26 10 chr13 114741684 114741832 -5003066 + L1MB4 LINE L1 5176 5320 -860 2241 120 0 0 chr13 114741832 114742132 -5002766 + AluSx SINE Alu 7 306 -6 4282 187 26 10 chr13 114742132 114742966 -5001932 + L1MB4 LINE L1 5320 6174 -6 742 199 22 0 chr13 114742971 114743152 -5001746 + L1MD2 LINE L1 5296 5480 -762 493 231 9 0 chr13 114743155 114743263 -5001635 + FLAM_A SINE Alu 1 109 -33 2171 265 66 15 chr13 114743326 114744128 -5000770 + L1MD2 LINE L1 5474 6346 -13 677 183 0 36 chr13 114744166 114744303 -5000595 - FLAM_C SINE Alu 0 133 2 180 111 0 0 chr13 114744308 114744335 -5000563 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 403 213 55 102 chr13 114744426 114744674 -5000224 + L1M4 LINE L1 5315 5480 -684 640 14 0 0 chr13 114744879 114744952 -4999946 + tRNA-Val-GTT tRNA tRNA 1 73 -3 658 298 24 20 chr13 114745847 114746095 -4998803 - L1ME1 LINE L1 -5 6161 5913 659 187 8 9 chr13 114746121 114746286 -4998612 + L1M4 LINE L1 5574 5739 -430 2341 103 3 10 chr13 114746287 114746597 -4998301 + AluSx SINE Alu 1 308 -4 2096 118 4 0 chr13 114747332 114747611 -4997287 + AluSg SINE Alu 1 280 -30 2282 104 10 0 chr13 114748409 114748708 -4996190 - AluSp SINE Alu -9 304 3 2246 114 0 0 chr13 114748769 114749067 -4995831 + AluSg1 SINE Alu 1 298 -11 1447 141 40 46 chr13 114749757 114750061 -4994837 + AluY SINE Alu 1 302 -9 650 213 87 65 chr13 114750951 114751110 -4993788 + L1MC5 LINE L1 7609 7763 -198 2378 82 0 25 chr13 114751110 114751425 -4993473 + AluY SINE Alu 1 307 -4 1549 179 10 49 chr13 114751434 114751742 -4993156 + AluSx SINE Alu 1 296 -16 650 213 87 65 chr13 114751742 114751882 -4993016 + L1MC5 LINE L1 7770 7925 -36 1648 167 45 7 chr13 114751887 114752175 -4992723 + AluJo SINE Alu 1 299 -13 438 282 118 35 chr13 114752307 114752687 -4992211 - L2 LINE L2 -212 3101 2701 380 268 110 0 chr13 114754507 114754634 -4990264 - MER112 DNA MER1_type -32 228 88 255 347 20 0 chr13 114755950 114756048 -4988850 - MIR SINE MIR -51 211 112 1043 147 21 31 chr13 114756142 114756333 -4988565 - MER20 DNA MER1_type 0 219 31 1140 148 148 95 chr13 114756484 114756767 -4988131 + AluJo SINE Alu 15 312 0 2392 101 3 0 chr13 114757182 114757489 -4987409 - AluSp SINE Alu -5 308 1 2497 60 10 0 chr13 114757570 114757872 -4987026 - AluY SINE Alu -6 305 1 515 218 98 17 chr13 114758142 114758283 -4986615 + MER46C DNA MER2_type 86 245 -93 392 281 39 0 chr13 114758283 114758411 -4986487 - MER94 DNA DNA -1 133 1 515 218 98 17 chr13 114758411 114758443 -4986455 + MER46C DNA MER2_type 245 273 -65 270 0 0 0 chr13 114760764 114760794 -4984104 + (CA)n Simple_repeat Simple_repeat 1 30 0 273 316 121 9 chr13 114760827 114761058 -4983840 + L2 LINE L2 1771 2027 -1287 293 278 34 54 chr13 114761081 114761286 -4983612 + L2 LINE L2 2919 3119 -194 617 14 0 0 chr13 114761872 114761944 -4982954 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 2120 97 0 0 chr13 114762132 114762399 -4982499 + AluSg SINE Alu 1 267 -43 637 13 0 0 chr13 114762756 114762832 -4982066 + tRNA-Lys-AAG tRNA tRNA 1 76 0 2683 169 83 5 chr13 114763007 114763587 -4981311 - L1MB3 LINE L1 -4 6179 5555 2478 45 10 26 chr13 114763613 114763922 -4980976 + AluY SINE Alu 1 304 -7 1933 91 113 7 chr13 114763930 114764205 -4980693 + AluSg1 SINE Alu 1 304 -5 1215 105 0 0 chr13 114764205 114764367 -4980531 + AluSg/x SINE Alu 137 298 -12 2635 32 0 16 chr13 114764367 114764680 -4980218 + AluY SINE Alu 1 308 -3 483 138 181 35 chr13 114764686 114764802 -4980096 + FLAM_C SINE Alu 1 133 0 2102 87 14 7 chr13 114764942 114765219 -4979679 - AluSx SINE Alu -33 279 1 1805 163 30 3 chr13 114765219 114765514 -4979384 - AluSx SINE Alu -9 303 1 2268 82 3 26 chr13 114765588 114765891 -4979007 - AluSp SINE Alu -17 296 1 795 276 30 33 chr13 114765891 114766257 -4978641 - L1MC4a LINE L1 -1944 5864 5500 181 175 125 38 chr13 114767684 114767764 -4977134 - MIR SINE MIR -171 91 5 323 340 56 27 chr13 114768035 114768373 -4976525 + L2 LINE L2 2899 3246 -67 230 307 27 0 chr13 114768401 114768476 -4976422 + MIR SINE MIR 150 226 -36 437 197 51 73 chr13 114768478 114768615 -4976283 + FLAM_A SINE Alu 9 142 0 262 319 17 0 chr13 114768785 114768901 -4975997 + L1MC5 LINE L1 7773 7890 -71 1232 187 0 109 chr13 114768903 114769224 -4975674 - AluJb SINE Alu -16 286 1 216 0 0 0 chr13 114769299 114769323 -4975575 + (A)n Simple_repeat Simple_repeat 1 24 0 2005 109 18 0 chr13 114769323 114769617 -4975281 + AluSg SINE Alu 1 299 0 205 28 0 56 chr13 114770072 114770108 -4974790 + (CGGGGG)n Simple_repeat Simple_repeat 3 36 0 292 143 0 0 chr13 114770113 114770155 -4974743 - FLAM SINE Alu -25 108 67 193 171 0 0 chr13 114770784 114770819 -4974079 + MIR SINE MIR 105 139 -123 640 14 0 0 chr13 114771263 114771336 -4973562 - tRNA-Val-GTT tRNA tRNA -3 73 1 2426 48 16 19 chr13 114771541 114771853 -4973045 + AluY SINE Alu 1 311 0 243 150 0 0 chr13 114771960 114772000 -4972898 - Zaphod DNA AcHobo -402 3629 3590 * 958 201 82 50 chr13 114771999 114772438 -4972460 - Zaphod DNA AcHobo -3047 984 532 382 316 53 8 chr13 114772785 114772918 -4971980 - L3 LINE CR1 -1028 549 411 2406 98 7 3 chr13 114773322 114773629 -4971269 + AluSx SINE Alu 1 308 -4 2323 108 3 0 chr13 114773702 114774007 -4970891 + AluSx SINE Alu 3 308 -4 239 222 0 0 chr13 114774279 114774324 -4970574 - L2 LINE L2 -16 3256 3212 2538 47 0 3 chr13 114776748 114777046 -4967852 - AluY SINE Alu -14 297 1 1586 176 47 17 chr13 114777653 114777949 -4966949 - AluSx SINE Alu -7 305 1 640 243 12 35 chr13 114778370 114778539 -4966359 - MLT1F1 LTR MaLR 0 567 403 382 277 13 65 chr13 114778562 114778717 -4966181 - MLT1F1 LTR MaLR -327 240 94 231 279 109 77 chr13 114779057 114779240 -4965658 + MIR SINE MIR 17 205 -57 1290 152 15 0 chr13 114779352 114779550 -4965348 - AluJo SINE Alu -9 303 103 306 286 153 36 chr13 114779973 114780372 -4964526 + L2 LINE L2 2704 3172 -141 1606 166 38 14 chr13 114780372 114780662 -4964236 - AluJo SINE Alu -15 297 1 306 286 153 36 chr13 114780662 114780753 -4964145 + L2 LINE L2 3172 3251 -62 252 232 0 0 chr13 114781438 114781494 -4963404 + CT-rich Low_complexity Low_complexity 1 56 0 500 310 123 45 chr13 114781816 114782606 -4962292 + L2 LINE L2 2238 3101 -212 240 299 0 0 chr13 114782721 114782788 -4962110 + L2 LINE L2 3245 3311 -2 243 241 19 0 chr13 114784318 114784372 -4960526 - Tigger3(Golem) DNA MER2_type 0 3029 2975 602 227 23 0 chr13 114784442 114784570 -4960328 - Tigger3(Golem) DNA MER2_type -2896 133 3 671 239 43 24 chr13 114784918 114785127 -4959771 - MLT1A2 LTR MaLR -3 371 159 2424 99 0 3 chr13 114785599 114785903 -4958995 - AluSq SINE Alu -10 303 1 301 137 98 0 chr13 114785930 114785981 -4958917 - Charlie4 DNA MER1_type -23 1938 1883 1683 174 0 16 chr13 114785982 114786287 -4958611 - AluJo SINE Alu -1 311 12 358 216 0 72 chr13 114786296 114786393 -4958505 - Charlie4 DNA MER1_type -1687 274 185 567 205 0 0 chr13 114786393 114786520 -4958378 - AluJb SINE Alu -6 306 180 368 301 75 0 chr13 114786522 114786668 -4958230 - Charlie4 DNA MER1_type -1769 192 36 627 190 0 36 chr13 114787161 114787298 -4957600 - FLAM_C SINE Alu -10 133 2 1380 197 11 25 chr13 114787394 114787668 -4957230 + AluJo SINE Alu 39 308 -4 336 235 0 0 chr13 114787954 114788056 -4956842 + L1M1 LINE L1 5665 5766 -525 2344 88 13 0 chr13 114789345 114789650 -4955248 + AluSc SINE Alu 1 309 0 501 86 0 14 chr13 114789707 114789777 -4955121 - AluJ/FLAM SINE Alu -236 76 8 225 328 0 0 chr13 114789927 114789994 -4954904 - tRNA-Glu-GAG tRNA tRNA -3 72 6 660 0 0 0 chr13 114790754 114790828 -4954070 - tRNA-Val-GTG tRNA tRNA -2 74 1 240 122 0 0 chr13 114792544 114792585 -4952313 + (GGA)n Simple_repeat Simple_repeat 1 41 0 215 167 0 42 chr13 114792781 114792853 -4952045 + GA-rich Low_complexity Low_complexity 1 69 0 513 301 21 16 chr13 114793805 114793991 -4950907 - MIR SINE MIR -2 260 74 1123 141 0 0 chr13 114794464 114794627 -4950271 - AluSg/x SINE Alu -9 303 141 272 255 59 20 chr13 114795090 114795192 -4949706 - MIR SINE MIR -55 207 102 1738 160 17 20 chr13 114796118 114796448 -4948450 + AluJb SINE Alu 1 312 0 581 186 83 64 chr13 114796713 114796869 -4948029 + AluJo SINE Alu 124 282 -30 842 134 0 15 chr13 114796894 114797028 -4947870 + FLAM_C SINE Alu 2 133 0 368 267 29 0 chr13 114797472 114797577 -4947321 + MIR SINE MIR 86 193 -69 228 204 56 0 chr13 114798230 114798284 -4946614 - MLT1E3 LTR MaLR -454 170 114 191 284 68 14 chr13 114798373 114798447 -4946451 - L2 LINE L2 -27 3286 3209 223 314 48 61 chr13 114798493 114798722 -4946176 - L2 LINE L2 -211 3061 2836 1706 185 0 16 chr13 114799083 114799391 -4945507 - AluJb SINE Alu -9 303 1 2353 98 3 0 chr13 114799477 114799773 -4945125 - AluSp SINE Alu -16 297 1 249 33 0 0 chr13 114799799 114799829 -4945069 + (TA)n Simple_repeat Simple_repeat 1 30 0 2315 97 0 0 chr13 114799831 114800119 -4944779 - AluSg SINE Alu -18 292 5 699 257 53 5 chr13 114801356 114801562 -4943336 - L1MC4 LINE L1 -1030 7012 6797 180 0 0 0 chr13 114802373 114802393 -4942505 + (A)n Simple_repeat Simple_repeat 1 20 0 1919 76 0 0 chr13 114803286 114803510 -4941388 - AluSq SINE Alu -87 226 3 291 28 0 0 chr13 114803834 114803870 -4941028 + (TG)n Simple_repeat Simple_repeat 2 37 0 1692 201 0 0 chr13 114803871 114804155 -4940743 - AluJb SINE Alu -28 284 1 1069 151 0 0 chr13 114804497 114804649 -4940249 - AluJb SINE Alu -38 274 123 546 157 9 65 chr13 114804653 114804761 -4940137 - MER8 DNA MER2_type -134 105 4 323 232 136 56 chr13 114805004 114805129 -4939769 + L1ME3A LINE L1 5108 5242 -904 888 287 74 28 chr13 114805145 114805824 -4939074 + L1ME3A LINE L1 5259 5968 -202 351 227 221 61 chr13 114806203 114806330 -4938568 + L1ME4a LINE L1 5932 6092 -29 2051 129 29 45 chr13 114806330 114806711 -4938187 - THE1C LTR MaLR 0 375 1 351 227 221 61 chr13 114806711 114806746 -4938152 + L1ME4a LINE L1 6092 6120 -1 291 225 5 84 chr13 114809549 114809740 -4935158 + G-rich Low_complexity Low_complexity 2 177 0 308 221 11 84 chr13 114809864 114810054 -4934844 + G-rich Low_complexity Low_complexity 2 177 0 566 245 76 61 chr13 114810441 114811237 -4933661 + HSREP522 Satellite telomeric 1 808 -270 246 269 76 61 chr13 114812504 114812701 -4932197 - L1MDb LINE L1 -5756 653 454 799 342 79 10 chr13 114812785 114813188 -4931710 - L1MDb LINE L1 -5875 534 104 21 0 0 0 chr13 114813313 114813334 -4931564 + AT_rich Low_complexity Low_complexity 1 21 0 2185 118 0 3 chr13 114813763 114814060 -4930838 - AluSx SINE Alu -16 296 1 532 258 88 13 chr13 114814062 114814221 -4930677 - AluJo SINE Alu -21 291 121 1326 124 38 19 chr13 114815380 114815590 -4929308 + AluJo SINE Alu 1 214 -98 577 309 27 18 chr13 114815712 114815935 -4928963 - MIR SINE MIR -36 226 2 229 330 85 0 chr13 114816241 114816347 -4928551 - L2 LINE L2 0 3272 3158 2197 110 7 7 chr13 114817018 114817317 -4927581 + AluSq SINE Alu 1 299 -14 1389 171 14 0 chr13 114818112 114818334 -4926564 + AluSx SINE Alu 2 226 -86 451 281 59 7 chr13 114819286 114819439 -4925459 - MIR3 SINE MIR -15 193 33 905 172 13 79 chr13 114819674 114819901 -4924997 + MLT1B LTR MaLR 8 219 -171 237 33 0 0 chr13 114819909 114819939 -4924959 + (TG)n Simple_repeat Simple_repeat 2 31 0 1337 223 0 11 chr13 114819939 114820226 -4924672 - AluJo SINE Alu -18 284 1 463 255 38 72 chr13 114820288 114820523 -4924375 + L1ME LINE L1 5321 5547 -617 836 176 7 0 chr13 114820908 114821050 -4923848 - FRAM SINE Alu -7 169 27 640 14 0 0 chr13 114821182 114821255 -4923643 + tRNA-Val-GTT tRNA tRNA 1 73 -3 502 146 0 0 chr13 114821592 114821674 -4923224 - tRNA-Leu-CTT tRNA tRNA -3 82 1 2561 50 3 0 chr13 114821993 114822293 -4922605 + AluY SINE Alu 1 301 -10 29 28 0 0 chr13 114822523 114822559 -4922339 + AT_rich Low_complexity Low_complexity 1 36 0 319 274 0 47 chr13 114823871 114823977 -4920921 - L1MC4 LINE L1 -1332 6710 6610 428 103 21 31 chr13 114824014 114824111 -4920787 + L1MA5 LINE L1 6200 6295 -5 192 200 0 0 chr13 114824240 114824280 -4920618 + C-rich Low_complexity Low_complexity 5 44 0 359 254 22 30 chr13 114824286 114824706 -4920192 + CT-rich Low_complexity Low_complexity 1 416 0 419 198 23 28 chr13 114824732 114824909 -4919989 + C-rich Low_complexity Low_complexity 4 179 0 360 278 0 63 chr13 114824913 114825104 -4919794 + CT-rich Low_complexity Low_complexity 1 179 0 690 144 8 0 chr13 114825218 114825350 -4919548 + L1MA5 LINE L1 6168 6300 0 1956 215 151 29 chr13 114825351 114826120 -4918778 + L1M4c LINE L1 1451 2313 -4071 21 36 0 0 chr13 114826247 114826275 -4918623 + AT_rich Low_complexity Low_complexity 1 28 0 333 246 109 36 chr13 114826662 114826772 -4918126 - L2 LINE L2 -1 3312 3195 2007 133 0 0 chr13 114826896 114827166 -4917732 - AluSx SINE Alu -42 270 1 248 296 29 78 chr13 114827598 114827710 -4917188 - L2 LINE L2 -1 3312 3213 2280 113 0 0 chr13 114827710 114828010 -4916888 - AluSq SINE Alu -13 300 1 248 296 29 78 chr13 114828010 114828103 -4916795 - L2 LINE L2 -100 3213 3117 1631 91 4 78 chr13 114828594 114828837 -4916061 - AluSx SINE Alu -51 261 37 687 153 0 0 chr13 114828839 114828950 -4915948 - FLAM_C SINE Alu -6 137 27 660 158 0 0 chr13 114828952 114829053 -4915845 + FLAM_C SINE Alu 3 103 -40 921 218 24 0 chr13 114829068 114829160 -4915738 + L1M2c LINE L1 1946 2034 -4755 2159 127 3 22 chr13 114829160 114829475 -4915423 + AluSg SINE Alu 1 309 -1 921 218 24 0 chr13 114829475 114829910 -4914988 + L1M2c LINE L1 2034 2563 -4226 437 155 13 8 chr13 114829913 114830148 -4914750 + AluSq SINE Alu 1 313 0 2220 110 0 0 chr13 114833229 114833528 -4911370 - AluSg SINE Alu -11 299 1 2341 141 67 19 chr13 114837884 114838303 -4906595 - MER1A DNA MER1_type -90 439 1 381 203 0 135 chr13 114838574 114838722 -4906176 - LTR41 LTR ERVL -6 767 640 1421 204 42 11 chr13 114838725 114839009 -4905889 + AluJb SINE Alu 1 293 -19 288 271 10 21 chr13 114839134 114839230 -4905668 + L1ME LINE L1 5474 5568 -553 436 239 9 18 chr13 114839257 114839366 -4905532 - FLAM_C SINE Alu -25 118 11 1727 173 0 13 chr13 114839602 114839902 -4904996 - AluJo SINE Alu -16 296 1 392 216 39 49 chr13 114840013 114840115 -4904783 + MER8 DNA MER2_type 3 103 -136 1065 197 0 5 chr13 114840115 114840308 -4904590 + AluJb SINE Alu 117 308 -4 612 236 57 6 chr13 114840887 114841044 -4903854 + AluJo SINE Alu 9 173 -139 2221 150 67 24 chr13 114841298 114841719 -4903179 - MER1A DNA MER1_type -90 439 1 460 217 0 0 chr13 114842001 114842084 -4902814 + FLAM_A SINE Alu 35 117 -25 1138 186 0 117 chr13 114842086 114842376 -4902522 + AluJb SINE Alu 44 299 -13 331 212 10 91 chr13 114842376 114842475 -4902423 + MER21B LTR ERV1 16 106 -757 * 1486 269 24 15 chr13 114842473 114842882 -4902016 + MER21B LTR ERV1 19 431 -432 1608 173 7 49 chr13 114842882 114843189 -4901709 - AluSx SINE Alu -18 294 1 2538 58 7 0 chr13 114843220 114843529 -4901369 - AluY SINE Alu 0 311 1 2175 108 7 3 chr13 114844415 114844712 -4900186 + AluSc SINE Alu 1 298 -11 229 227 45 34 chr13 114844712 114844800 -4900098 - MER45R DNA AcHobo -140 1441 1353 207 69 0 0 chr13 114845316 114845345 -4899553 + (T)n Simple_repeat Simple_repeat 1 29 0 1804 89 8 4 chr13 114845361 114845596 -4899302 - AluSp SINE Alu -77 236 1 340 228 30 34 chr13 114846196 114846293 -4898605 + L1MC4 LINE L1 1995 6983 -1339 25 31 0 0 chr13 114846590 114846622 -4898276 + AT_rich Low_complexity Low_complexity 1 32 0 2654 37 0 3 chr13 114846750 114847046 -4897852 + AluY SINE Alu 1 295 -16 302 316 98 36 chr13 114847148 114847341 -4897557 - L1MC/D LINE L1 -726 5516 5312 325 229 44 40 chr13 114847341 114847508 -4897390 - L1MC4a LINE L1 -324 7484 7293 2220 119 0 6 chr13 114847621 114847932 -4896966 - AluSg SINE Alu -1 309 1 382 210 32 127 chr13 114848143 114848249 -4896649 - LTR8 LTR ERV1 -547 144 56 6230 139 15 60 chr13 114848249 114849264 -4895634 + LTR5 LTR ERVK 1 969 0 382 210 32 127 chr13 114849264 114849314 -4895584 - LTR8 LTR ERV1 -635 56 3 1084 276 116 19 chr13 114849488 114850014 -4894884 - L1ME3A LINE L1 -14 6156 5580 2508 70 7 0 chr13 114851079 114851381 -4893517 - AluY SINE Alu -7 304 1 1609 189 7 33 chr13 114851385 114851545 -4893353 - AluJb SINE Alu -18 294 144 2233 115 10 13 chr13 114851545 114851858 -4893040 - AluSx SINE Alu 0 312 1 1609 189 7 33 chr13 114851858 114851999 -4892899 - AluJb SINE Alu -168 144 1 367 328 8 17 chr13 114852242 114852361 -4892537 - L2 LINE L2 -1 3271 3154 495 274 91 0 chr13 114852445 114852642 -4892256 - MER112 DNA MER1_type -31 229 15 1733 169 19 29 chr13 114852660 114852967 -4891931 + AluJo SINE Alu 1 304 -8 585 209 17 0 chr13 114852976 114853091 -4891807 + FAM SINE Alu 3 119 -66 884 200 12 0 chr13 114853098 114853258 -4891640 + AluJb SINE Alu 87 248 -64 1923 42 4 34 chr13 114853628 114853867 -4891031 + AluY SINE Alu 31 262 -49 720 251 0 6 chr13 114853967 114854142 -4890756 + FRAM SINE Alu 1 166 -10 1009 234 54 30 chr13 114854143 114854424 -4890474 + MER21B LTR ERV1 501 857 -74 239 394 59 24 chr13 114854492 114854662 -4890236 + MIR SINE MIR 12 187 -75 635 139 28 0 chr13 114855337 114855445 -4889453 - AluJb SINE Alu -8 304 194 650 205 0 0 chr13 114855486 114855603 -4889295 + FLAM_C SINE Alu 9 125 -18 2872 123 9 2 chr13 114855616 114856048 -4888850 - MER1A DNA MER1_type -39 490 56 21 0 0 0 chr13 114857143 114857164 -4887734 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 114857481 114857503 -4887395 + GC_rich Low_complexity Low_complexity 1 22 0 234 180 0 0 chr13 114858057 114858118 -4886780 + GA-rich Low_complexity Low_complexity 3 63 0 239 270 200 0 chr13 114859357 114859457 -4885441 + MIR SINE MIR 7 126 -136 499 210 132 36 chr13 114859865 114860032 -4884866 - MER112 DNA MER1_type -60 200 18 2154 113 7 0 chr13 114860321 114860612 -4884286 - AluSx SINE Alu -19 293 1 1278 103 6 6 chr13 114860692 114860897 -4884001 - AluSc SINE Alu 0 309 113 435 258 92 48 chr13 114860997 114861325 -4883573 + L2 LINE L2 2758 3097 -216 1585 196 10 14 chr13 114861325 114861488 -4883410 - AluJb SINE Alu -13 299 136 2141 100 35 0 chr13 114861488 114861777 -4883121 - AluSg1 SINE Alu -10 299 1 1585 196 10 14 chr13 114861777 114861904 -4882994 - AluJb SINE Alu -176 136 10 1552 181 17 54 chr13 114861931 114862280 -4882618 - MLT1D LTR MaLR -8 497 162 1623 205 0 7 chr13 114862283 114862580 -4882318 + AluJo SINE Alu 5 299 -13 303 307 0 0 chr13 114862580 114862655 -4882243 + MER21B LTR ERV1 16 90 -773 2744 232 79 41 chr13 114862677 114862839 -4882059 + MER21B LTR ERV1 19 173 -690 2030 146 0 3 chr13 114862839 114863133 -4881765 - AluSq SINE Alu -20 293 1 2744 232 79 41 chr13 114863133 114863443 -4881455 + MER21B LTR ERV1 173 470 -393 1793 164 0 16 chr13 114863443 114863747 -4881151 + AluJo SINE Alu 1 299 -13 2744 232 79 41 chr13 114863747 114864031 -4880867 + MER21B LTR ERV1 470 805 -58 6972 115 24 16 chr13 114864048 114865111 -4879787 + MER11C LTR ERVK 1 1071 0 205 309 93 31 chr13 114865238 114865335 -4879563 + MIR SINE MIR 85 187 -75 207 203 47 31 chr13 114865565 114865629 -4879269 + (CACCC)n Simple_repeat Simple_repeat 1 65 0 21 0 0 0 chr13 114865862 114865883 -4879015 + AT_rich Low_complexity Low_complexity 1 21 0 349 143 19 0 chr13 114866048 114866115 -4878783 - Alu SINE Alu -248 52 3 929 108 8 0 chr13 114867308 114867437 -4877461 + AluY SINE Alu 166 295 -16 2324 87 0 7 chr13 114869134 114869434 -4875464 + AluY SINE Alu 1 298 -13 869 179 61 41 chr13 114869972 114870168 -4874730 + MER3 DNA MER1_type 10 209 0 21 0 0 0 chr13 114870312 114870333 -4874565 + AT_rich Low_complexity Low_complexity 1 21 0 1721 150 27 27 chr13 114871161 114871461 -4873437 - AluSq SINE Alu -13 300 1 2376 108 0 0 chr13 114871910 114872215 -4872683 - AluSx SINE Alu -7 305 1 1324 125 67 5 chr13 114872433 114872641 -4872257 + AluSg/x SINE Alu 83 303 -9 1863 142 32 7 chr13 114872775 114873056 -4871842 - AluJo SINE Alu -12 300 13 588 183 36 29 chr13 114873374 114873511 -4871387 + AluSg/x SINE Alu 159 296 -16 1012 245 68 28 chr13 114875294 114875751 -4869147 - L1MC5 LINE L1 -35 7926 7452 204 167 0 0 chr13 114926395 114926443 -4818455 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 210 71 0 0 chr13 114927032 114927060 -4817838 + (A)n Simple_repeat Simple_repeat 1 28 0 1559 223 45 37 chr13 114930014 114930477 -4814421 - MLT1C LTR MaLR 0 467 1 183 42 0 0 chr13 114931345 114931369 -4813529 + (TG)n Simple_repeat Simple_repeat 1 24 0 436 342 27 5 chr13 114932355 114932539 -4812359 + MIR SINE MIR 46 233 -29 1706 186 0 10 chr13 114932893 114933189 -4811709 - AluJb SINE Alu -19 293 1 360 158 0 0 chr13 114933269 114933326 -4811572 - MLT1E LTR MaLR 0 567 511 1830 202 41 3 chr13 114933327 114933694 -4811204 - MLT1B LTR MaLR 0 390 10 721 290 63 79 chr13 114933701 114934260 -4810638 - MLT1E LTR MaLR -43 550 1 1053 240 70 3 chr13 114935093 114935406 -4809492 + MLT1C LTR MaLR 1 334 -133 214 195 0 0 chr13 114935939 114935980 -4808918 + A-rich Low_complexity Low_complexity 1 41 0 1088 143 44 25 chr13 114936468 114936671 -4808227 + L1MA8 LINE L1 6083 6289 -2 468 303 73 27 chr13 114940071 114940371 -4804527 - HERV16 LTR ERVL -3821 1175 862 399 200 25 0 chr13 114940505 114940585 -4804313 - HERV16 LTR ERVL -4325 671 590 942 192 133 103 chr13 114940779 114940945 -4803953 - MLT1A2 LTR MaLR 0 374 215 324 48 0 0 chr13 114940945 114940987 -4803911 + (GA)n Simple_repeat Simple_repeat 1 42 0 942 192 133 103 chr13 114940987 114941180 -4803718 - MLT1A2 LTR MaLR -159 215 4 1041 193 33 5 chr13 114941240 114941453 -4803445 - MER20 DNA MER1_type 0 219 1 714 287 121 20 chr13 114941680 114942070 -4802828 - LTR16A LTR ERVL -6 444 16 252 284 67 52 chr13 114942148 114942282 -4802616 + L2 LINE L2 3137 3272 0 1384 184 0 72 chr13 114943322 114943647 -4801251 - AluJb SINE Alu 0 303 1 522 0 0 0 chr13 114944300 114944358 -4800540 + (TATAA)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr13 114944816 114944837 -4800061 + AT_rich Low_complexity Low_complexity 1 21 0 268 244 12 47 chr13 114945470 114945556 -4799342 - MIR3 SINE MIR -8 200 118 1092 231 85 70 chr13 114945560 114945724 -4799174 + MLT1C LTR MaLR 3 163 -304 2146 94 10 24 chr13 114945724 114946022 -4798876 + AluY SINE Alu 1 294 -17 1092 231 85 70 chr13 114946022 114946315 -4798583 + MLT1C LTR MaLR 163 467 0 2339 64 59 42 chr13 114946498 114946855 -4798043 - L1P LINE L1 -792 5354 4992 2466 64 18 95 chr13 114946855 114947245 -4797653 + L1PA8 LINE L1 5808 6167 -5 262 347 120 0 chr13 114947245 114947461 -4797437 - LTR16C LTR ERVL -25 466 225 3083 219 33 2 chr13 114947880 114948509 -4796389 - MER82 DNA MER2_type 0 653 5 180 111 0 0 chr13 114949457 114949484 -4795414 + (TTTTTG)n Simple_repeat Simple_repeat 5 31 0 2117 99 0 0 chr13 114949873 114950136 -4794762 + AluSc SINE Alu 11 273 -36 963 147 0 0 chr13 114950139 114950302 -4794596 + (TA)n Simple_repeat Simple_repeat 1 163 0 315 0 0 0 chr13 114950302 114950337 -4794561 + (CA)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr13 114950337 114950365 -4794533 + (TA)n Simple_repeat Simple_repeat 2 29 0 226 273 45 0 chr13 114950618 114950684 -4794214 + MIR SINE MIR 117 185 -77 196 125 0 0 chr13 114950702 114950734 -4794164 + MIR SINE MIR 154 185 -77 196 125 0 0 chr13 114950752 114950784 -4794114 + MIR SINE MIR 154 185 -77 196 125 0 0 chr13 114950802 114950834 -4794064 + MIR SINE MIR 154 185 -77 196 125 0 0 chr13 114950852 114950884 -4794014 + MIR SINE MIR 154 185 -77 196 125 0 0 chr13 114950902 114950934 -4793964 + MIR SINE MIR 154 185 -77 185 156 0 0 chr13 114951149 114951181 -4793717 + MIR SINE MIR 154 185 -77 183 376 12 12 chr13 114951454 114951539 -4793359 + L3 LINE CR1 1295 1379 -198 2612 145 9 21 chr13 114951852 114952287 -4792611 + MER57B LTR ERV1 1 430 -4 2039 113 52 7 chr13 114952295 114952586 -4792312 - AluSx SINE Alu -8 304 1 770 268 42 63 chr13 114953904 114954287 -4790611 + L1ME2 LINE L1 5795 6331 -3 344 232 24 0 chr13 114954403 114954485 -4790413 + L1MA10 LINE L1 6249 6332 -2 238 316 21 0 chr13 114955496 114955591 -4789307 + L1ME4a LINE L1 5602 5698 -423 341 266 176 22 chr13 114955638 114955860 -4789038 + L1ME4a LINE L1 5692 5947 -174 2340 97 3 0 chr13 114956120 114956418 -4788480 + AluSq SINE Alu 1 299 -14 252 289 66 59 chr13 114957796 114957948 -4786950 - L2 LINE L2 -10 3303 3151 352 335 38 89 chr13 114958128 114958295 -4786603 + L2 LINE L2 2621 2795 -477 2013 147 3 0 chr13 114958295 114958580 -4786318 - AluSx SINE Alu -22 290 5 352 335 38 89 chr13 114958580 114958892 -4786006 + L2 LINE L2 2795 3068 -204 864 277 74 60 chr13 114958960 114959379 -4785519 - MLT1J LTR MaLR -25 486 62 211 340 21 31 chr13 114959450 114959547 -4785351 + L2 LINE L2 3171 3266 -6 2031 146 7 0 chr13 114959798 114960092 -4784806 + AluSx SINE Alu 1 296 -16 981 60 0 49 chr13 114960106 114960291 -4784607 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 426 287 128 38 chr13 114960546 114960835 -4784063 + L2 LINE L2 1365 1679 -1635 876 121 0 0 chr13 114960902 114961026 -4783872 - AluSg/x SINE Alu -2 310 187 2005 112 0 0 chr13 114961026 114961294 -4783604 - AluSx SINE Alu -44 268 1 723 308 135 52 chr13 114961321 114962769 -4782129 + L2 LINE L2 1744 3311 -2 438 200 96 9 chr13 114962950 114963065 -4781833 + MLT1A1 LTR MaLR 1 125 -240 234 179 0 0 chr13 114963068 114963107 -4781791 - U6 snRNA snRNA -68 39 1 1704 201 6 6 chr13 114963113 114963447 -4781451 + MLT1A1 LTR MaLR 31 364 -1 347 260 20 10 chr13 114963590 114963690 -4781208 + MER94 DNA DNA 11 111 -23 2514 54 0 26 chr13 114964057 114964370 -4780528 + AluY SINE Alu 1 305 -6 195 42 0 0 chr13 114965205 114965229 -4779669 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1805 113 40 18 chr13 114965231 114965506 -4779392 - AluSx SINE Alu -31 281 1 2837 67 5 25 chr13 114965625 114966228 -4778670 - L1P3 LINE L1 -566 5588 5000 2849 61 41 0 chr13 114966234 114966571 -4778327 + L1PA7 LINE L1 5789 6146 -8 1941 59 0 0 chr13 114966623 114966859 -4778039 - LTR12 LTR ERV1 0 714 479 391 246 9 0 chr13 114966859 114966969 -4777929 - LTR30 LTR ERV1 -88 634 524 529 65 8 9 chr13 114966969 114967060 -4777838 - LTR12 LTR ERV1 -456 258 53 302 173 0 0 chr13 114967060 114967112 -4777786 - LTR30 LTR ERV1 -670 52 1 875 228 16 21 chr13 114967150 114967343 -4777555 + AluJo SINE Alu 3 194 -118 806 199 0 0 chr13 114967373 114967509 -4777389 + FRAM SINE Alu 1 40 0 1644 176 90 3 chr13 114968878 114969190 -4775708 + MER61A LTR ERV1 5 343 0 436 336 48 51 chr13 114969776 114970091 -4774807 - L2 LINE L2 -2 3270 2957 227 318 33 33 chr13 114970396 114970547 -4774351 - MIR SINE MIR -110 152 2 495 280 34 27 chr13 114971172 114971518 -4773380 - L1ME3A LINE L1 -7 6163 5777 854 269 51 44 chr13 114971569 114971772 -4773126 - L1ME3A LINE L1 -565 5599 5399 5431 126 219 48 chr13 114971772 114972864 -4772034 + MER52C LTR ERV1 1 1278 0 854 269 51 44 chr13 114972864 114973289 -4771609 - L1ME3A LINE L1 -765 5399 4957 452 292 29 41 chr13 114973535 114973706 -4771192 - MIR SINE MIR -90 172 4 2173 104 10 0 chr13 114975165 114975463 -4769435 - AluSx SINE Alu -11 301 1 213 359 117 0 chr13 114975506 114975609 -4769289 - MIR SINE MIR -74 134 20 357 268 0 0 chr13 114975847 114975918 -4768980 - L2 LINE L2 0 3313 3243 443 253 77 95 chr13 114976230 114976451 -4768447 - L2 LINE L2 -498 2816 2600 1760 185 132 0 chr13 114976579 114976935 -4767963 + MER57A LTR ERV1 1 403 0 2128 111 0 16 chr13 114977360 114977666 -4767232 - AluSx SINE Alu -11 301 1 228 67 0 0 chr13 114979832 114979862 -4765036 + (CA)n Simple_repeat Simple_repeat 1 30 0 23 33 0 0 chr13 114981603 114981633 -4763265 + AT_rich Low_complexity Low_complexity 1 30 0 2339 142 3 3 chr13 114981671 114982051 -4762847 - L1P LINE L1 -981 5165 4786 1330 68 0 0 chr13 114982052 114982215 -4762683 + L1PA13 LINE L1 6001 6163 0 278 286 45 26 chr13 114983089 114983243 -4761655 - L1ME4a LINE L1 0 6121 5965 478 178 40 11 chr13 114984172 114984346 -4760552 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 606 165 51 7 chr13 114984358 114984632 -4760266 + (TCTA)n Simple_repeat Simple_repeat 1 286 0 24 32 0 0 chr13 114985162 114985193 -4759705 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 114985258 114985282 -4759616 + AT_rich Low_complexity Low_complexity 1 24 0 1301 247 136 24 chr13 114985460 114985962 -4758936 - L1MC4a LINE L1 0 7808 7251 303 191 71 36 chr13 114985966 114986050 -4758848 + L1MC4a LINE L1 7022 7108 -700 1114 179 44 20 chr13 114986078 114986329 -4758569 + L1MC4a LINE L1 7019 7275 -533 26 64 0 0 chr13 114987271 114987318 -4757580 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr13 114988385 114988421 -4756477 + AT_rich Low_complexity Low_complexity 1 36 0 498 279 29 3 chr13 114988754 114988940 -4755958 - L1PA16 LINE L1 0 6154 5968 392 287 198 47 chr13 114989593 114989711 -4755187 - L1M4 LINE L1 -1584 4562 4463 1846 173 27 67 chr13 114989711 114990116 -4754782 - MLT1B LTR MaLR 0 390 2 392 287 198 47 chr13 114990116 114990307 -4754591 - L1M4 LINE L1 -1683 4463 4302 2216 106 17 0 chr13 114990307 114990600 -4754298 - AluSx SINE Alu -14 298 1 392 287 198 47 chr13 114990600 114990714 -4754184 - L1M4 LINE L1 -1844 4302 4074 269 298 85 21 chr13 114991007 114991148 -4753750 + L3 LINE CR1 497 646 -931 1927 167 55 3 chr13 114991157 114991523 -4753375 - L1MB7 LINE L1 -8 6176 5792 802 242 35 37 chr13 114992010 114992237 -4752661 - MIR SINE MIR 0 262 38 240 295 0 0 chr13 114992244 114992305 -4752593 + GA-rich Low_complexity Low_complexity 4 64 0 1040 38 8 0 chr13 114993884 114994017 -4750881 + (TTCC)n Simple_repeat Simple_repeat 1 134 0 322 234 13 13 chr13 114995663 114995740 -4749158 + MIR SINE MIR 64 140 -122 302 293 38 19 chr13 114995747 114995853 -4749045 - L2 LINE L2 0 3313 3206 184 293 121 10 chr13 114995853 114995952 -4748946 + MIR SINE MIR 147 256 -6 2209 109 70 25 chr13 114996017 114996376 -4748522 + THE1C LTR MaLR 1 375 0 3484 127 6 10 chr13 114996960 114997458 -4747440 - LOR1a LTR ERV1 0 497 2 1272 181 19 9 chr13 114997471 114997687 -4747211 - MER20 DNA MER1_type -1 218 1 241 241 17 0 chr13 114997692 114997750 -4747148 - MER20 DNA MER1_type -160 59 1 283 274 30 105 chr13 114997751 114998017 -4746881 + L2 LINE L2 2963 3208 -105 219 346 34 39 chr13 114998332 114998511 -4746387 + L2 LINE L2 2925 3102 -170 1844 235 56 75 chr13 114998735 114999199 -4745699 + MER119 DNA MER1_type 6 477 -106 2716 112 3 29 chr13 114999199 114999573 -4745325 - THE1B LTR MaLR 0 364 1 11327 116 35 0 chr13 114999573 115001100 -4743798 - THE1B-int LTR MaLR 0 1580 1 2802 118 3 0 chr13 115001100 115001463 -4743435 - THE1B LTR MaLR 0 364 1 1844 235 56 75 chr13 115001463 115001584 -4743314 + MER119 DNA MER1_type 474 582 -1 462 297 5 32 chr13 115001605 115001790 -4743108 - LTR67 LTR ERVL -7 550 371 274 239 10 5 chr13 115001833 115002036 -4742862 + GA-rich Low_complexity Low_complexity 1 204 0 4679 68 8 6 chr13 115002077 115002123 -4742775 + L1PA7 LINE L1 5175 5219 -935 2638 59 0 0 chr13 115002123 115002429 -4742469 - L1PA7 LINE L1 -3 6151 5846 4679 68 8 6 chr13 115002429 115003060 -4741838 + L1PA7 LINE L1 5219 5851 -303 21 57 0 0 chr13 115003088 115003123 -4741775 + AT_rich Low_complexity Low_complexity 1 35 0 22 94 0 0 chr13 115003147 115003211 -4741687 + AT_rich Low_complexity Low_complexity 1 64 0 227 298 10 19 chr13 115004952 115005056 -4739842 + (TA)n Simple_repeat Simple_repeat 2 104 0 219 69 0 0 chr13 115005497 115005526 -4739372 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1720 221 88 33 chr13 115007259 115007383 -4737515 - LTR40a LTR ERVL 0 519 403 1610 195 0 10 chr13 115007383 115007681 -4737217 + AluJb SINE Alu 1 295 -17 1720 221 88 33 chr13 115007681 115008045 -4736853 - LTR40a LTR ERVL -116 403 4 885 280 83 33 chr13 115008467 115008863 -4736035 - LTR16A LTR ERVL -9 441 26 21563 53 7 1 chr13 115008978 115013434 -4731464 - L1PA5 LINE L1 0 6154 1664 264 333 12 6 chr13 115013484 115013649 -4731249 - HERVL LTR ERVL -310 5344 5179 2141 127 138 5 chr13 115014321 115014699 -4730199 - MSTA LTR MaLR 0 428 1 380 328 8 0 chr13 115014947 115015081 -4729817 - ERVL LTR ERVL -3481 2283 2149 230 211 173 0 chr13 115015621 115015673 -4729225 - L2 LINE L2 -1 3271 3211 818 122 0 0 chr13 115015918 115016025 -4728873 - FLAM_C SINE Alu -24 119 13 195 333 78 29 chr13 115016059 115016161 -4728737 - L2 LINE L2 -27 3245 3139 260 306 75 6 chr13 115016503 115016663 -4728235 - L1ME LINE L1 -240 5881 5711 800 76 48 22 chr13 115016828 115017105 -4727793 + (TA)n Simple_repeat Simple_repeat 1 284 0 305 191 44 15 chr13 115017107 115017175 -4727723 + L1MCa LINE L1 1995 2064 -4362 930 93 7 19 chr13 115017177 115017493 -4727405 + (TA)n Simple_repeat Simple_repeat 1 312 0 201 94 0 0 chr13 115017505 115017537 -4727361 + (TA)n Simple_repeat Simple_repeat 2 33 0 1705 167 11 4 chr13 115017538 115017819 -4727079 - AluSx SINE Alu -29 283 1 331 248 37 13 chr13 115018072 115018222 -4726676 - L1MC/D LINE L1 -302 5819 5711 1760 270 77 22 chr13 115018227 115018943 -4725955 - L1ME2 LINE L1 -9 6224 5470 357 256 70 103 chr13 115019303 115019576 -4725322 - L1ME2 LINE L1 -5814 582 319 295 323 30 12 chr13 115019632 115019799 -4725099 - L1ME2 LINE L1 -6172 224 55 901 287 63 29 chr13 115020381 115020413 -4724485 - L1MC/D LINE L1 -2024 5784 5755 1917 125 107 27 chr13 115020413 115020750 -4724148 + THE1B LTR MaLR 1 364 0 901 287 63 29 chr13 115020750 115021160 -4723738 - L1MC/D LINE L1 -2053 5755 5327 754 159 0 36 chr13 115022678 115022816 -4722082 - FLAM_C SINE Alu 0 133 1 239 105 26 0 chr13 115023187 115023225 -4721673 - MLT1D LTR MaLR -217 288 250 888 172 35 70 chr13 115023272 115023528 -4721370 - MLT1D LTR MaLR -258 247 1 1711 193 30 71 chr13 115024446 115024955 -4719943 - Charlie1b DNA MER1_type -2 521 34 3791 66 6 0 chr13 115025705 115026219 -4718679 - L1PA8A LINE L1 -306 5825 5309 2055 98 40 0 chr13 115026219 115026508 -4718390 + L1PA8A LINE L1 5822 6129 -2 7559 231 43 18 chr13 115026529 115026759 -4718139 - L1MA7 LINE L1 0 7710 7487 192 40 0 0 chr13 115026759 115026784 -4718114 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7559 231 43 18 chr13 115026784 115029978 -4714920 - L1MA7 LINE L1 -223 7487 4146 225 0 0 0 chr13 115030009 115030034 -4714864 + (TG)n Simple_repeat Simple_repeat 2 26 0 2015 267 25 30 chr13 115030125 115031462 -4713436 - L1MA7 LINE L1 -4249 3317 2262 363 220 0 0 chr13 115032148 115032239 -4712659 + GA-rich Low_complexity Low_complexity 2 92 0 798 318 128 3 chr13 115032806 115033196 -4711702 + LTR16B LTR ERVL 1 439 -25 652 336 78 63 chr13 115033469 115035101 -4709797 + ERVL LTR ERVL 3705 5360 -404 385 294 20 13 chr13 115035399 115035552 -4709346 - Charlie2 DNA MER1_type -2703 159 6 394 266 78 52 chr13 115036239 115036431 -4708467 + L2 LINE L2 3115 3311 -2 345 333 103 31 chr13 115036458 115036719 -4708179 - L1ME LINE L1 -533 5588 5309 1494 164 54 24 chr13 115036910 115037245 -4707653 + MLT1A1 LTR MaLR 19 363 -2 273 306 92 10 chr13 115038987 115039085 -4705813 - L2 LINE L2 -2 3311 3206 195 129 0 0 chr13 115039837 115039868 -4705030 + (GAA)n Simple_repeat Simple_repeat 3 33 0 1383 168 79 10 chr13 115040834 115041138 -4703760 - L1MA4 LINE L1 -6 6294 5970 245 234 169 13 chr13 115042180 115042257 -4702641 - L2 LINE L2 0 3313 3225 223 83 0 28 chr13 115042442 115042478 -4702420 + MIR SINE MIR 118 152 -110 188 286 33 11 chr13 115044014 115044105 -4700793 - L2 LINE L2 -286 3027 2935 229 51 51 0 chr13 115044778 115044817 -4700081 + (TG)n Simple_repeat Simple_repeat 1 41 0 834 261 67 26 chr13 115044825 115045304 -4699594 - L1MEc LINE L1 -5038 1338 791 687 75 0 0 chr13 115045337 115045431 -4699467 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 1481 254 51 20 chr13 115045437 115046050 -4698848 - L1MEc LINE L1 -5728 668 37 375 319 75 49 chr13 115046182 115046408 -4698490 - MIR SINE MIR 0 262 31 225 180 0 0 chr13 115048993 115049043 -4695855 + CT-rich Low_complexity Low_complexity 2 51 0 273 256 63 80 chr13 115049604 115049842 -4695056 + MER112 DNA MER1_type 8 241 -19 343 301 84 14 chr13 115051496 115051639 -4693259 - MIR SINE MIR -96 166 14 2026 157 123 5 chr13 115053498 115053881 -4691017 + MSTA LTR MaLR 1 428 0 1124 272 63 59 chr13 115053888 115054772 -4690126 - L1MC5 LINE L1 -436 7525 6648 317 304 72 58 chr13 115055274 115055787 -4689111 - HAL1b LINE L1 -768 580 61 699 154 22 9 chr13 115056351 115056516 -4688382 + MER1B DNA MER1_type 3 139 -158 277 140 0 0 chr13 115056518 115056568 -4688330 + MER1B DNA MER1_type 130 139 -158 261 130 0 0 chr13 115056563 115056609 -4688289 + MER1B DNA MER1_type 134 139 -158 * 261 130 0 0 chr13 115056604 115056650 -4688248 + MER1B DNA MER1_type 134 139 -158 261 130 0 0 chr13 115056645 115056691 -4688207 + MER1B DNA MER1_type 134 139 -158 261 130 0 0 chr13 115056686 115056732 -4688166 + MER1B DNA MER1_type 134 139 -158 * 262 54 0 0 chr13 115056727 115056773 -4688125 + MER1B DNA MER1_type 134 139 -158 * 1143 121 188 0 chr13 115056768 115056975 -4687923 + MER1B DNA MER1_type 134 339 0 614 298 56 71 chr13 115057953 115058698 -4686200 - L1M4 LINE L1 -1112 5034 3684 2200 56 0 4 chr13 115058827 115059093 -4685805 - AluY SINE Alu -6 305 41 309 346 87 0 chr13 115059347 115059601 -4685297 - L1M4 LINE L1 -2974 3172 2897 23 33 0 0 chr13 115059931 115059961 -4684937 + AT_rich Low_complexity Low_complexity 1 30 0 355 227 10 10 chr13 115060638 115060735 -4684163 - MIR SINE MIR -42 220 124 2298 44 0 41 chr13 115061552 115061847 -4683051 + AluY SINE Alu 1 317 0 307 0 0 0 chr13 115061847 115061881 -4683017 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 459 216 20 0 chr13 115061915 115062017 -4682881 + MIR3 SINE MIR 82 185 -23 23 54 0 0 chr13 115063148 115063185 -4681713 + AT_rich Low_complexity Low_complexity 1 37 0 27 62 0 0 chr13 115063277 115063325 -4681573 + AT_rich Low_complexity Low_complexity 1 48 0 230 274 186 10 chr13 115063706 115063808 -4681090 - L2 LINE L2 -2 3311 3192 225 83 0 0 chr13 115064684 115064720 -4680178 + (TC)n Simple_repeat Simple_repeat 2 37 0 324 0 0 0 chr13 115064720 115064756 -4680142 + (CA)n Simple_repeat Simple_repeat 1 36 0 328 386 14 18 chr13 115064912 115065132 -4679766 + MIR SINE MIR 8 226 -36 2379 266 26 9 chr13 115065333 115065975 -4678923 + MER82 DNA MER2_type 1 653 0 204 322 33 25 chr13 115066252 115066373 -4678525 - L2 LINE L2 -1 3312 3191 268 316 125 63 chr13 115066847 115067214 -4677684 - L2 LINE L2 -26 3246 2857 591 295 111 13 chr13 115068491 115068789 -4676109 + L1ME LINE L1 5430 5756 -365 21 36 0 0 chr13 115068850 115068878 -4676020 + AT_rich Low_complexity Low_complexity 1 28 0 721 190 90 32 chr13 115068973 115069298 -4675600 - L1MC5 LINE L1 -44 7917 7612 688 83 28 0 chr13 115069298 115069406 -4675492 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 721 190 90 32 chr13 115069406 115069783 -4675115 - L1MC5 LINE L1 -349 7612 7036 39345 83 9 7 chr13 115069794 115075926 -4668972 - L1PA6 LINE L1 0 6154 11 2168 122 6 3 chr13 115075949 115076261 -4668637 - AluSq SINE Alu 0 313 1 394 209 34 154 chr13 115076261 115076495 -4668403 - L1MC5 LINE L1 -921 7040 6835 228 258 0 16 chr13 115076538 115076600 -4668298 + A-rich Low_complexity Low_complexity 5 65 0 22 0 0 0 chr13 115078248 115078270 -4666628 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr13 115078882 115078903 -4665995 + (A)n Simple_repeat Simple_repeat 1 21 0 291 306 125 38 chr13 115078997 115079157 -4665741 + MER5A DNA MER1_type 1 174 -15 616 297 144 56 chr13 115079633 115079999 -4664899 + L2 LINE L2 1805 2222 -1092 2106 120 7 3 chr13 115079999 115080300 -4664598 + AluSx SINE Alu 1 302 -10 616 297 144 56 chr13 115080300 115080398 -4664500 + L2 LINE L2 2222 2310 -1004 630 262 34 39 chr13 115080401 115080607 -4664291 + MLT1A2 LTR MaLR 120 324 -50 382 306 194 28 chr13 115080611 115081007 -4663891 + L2 LINE L2 2304 2765 -549 240 312 101 63 chr13 115081238 115081603 -4663295 + L2 LINE L2 2842 3220 -93 1115 312 116 36 chr13 115082013 115083474 -4661424 - L1MEd LINE L1 -2414 4434 2857 234 288 58 29 chr13 115083918 115084057 -4660841 - L1MEd LINE L1 -4290 2559 2417 490 332 66 42 chr13 115084105 115084258 -4660640 - L1MEd LINE L1 -5260 1578 1430 216 0 0 0 chr13 115084258 115084282 -4660616 + (TG)n Simple_repeat Simple_repeat 1 24 0 490 332 66 42 chr13 115084282 115084706 -4660192 - L1MEd LINE L1 -5408 1430 987 276 53 0 0 chr13 115084851 115084889 -4660009 + (TG)n Simple_repeat Simple_repeat 2 39 0 3564 287 90 27 chr13 115085735 115087474 -4657424 - L2 LINE L2 -717 2597 749 600 276 153 33 chr13 115087760 115088270 -4656628 - L1MEd LINE L1 -2661 3468 2898 2050 65 72 4 chr13 115089493 115089755 -4655143 - AluSc SINE Alu -21 288 9 340 316 77 45 chr13 115089785 115090032 -4654866 - L1MEd LINE L1 -4864 1255 1001 648 345 31 0 chr13 115090282 115090508 -4654390 + MIR SINE MIR 27 259 -3 1834 149 31 0 chr13 115091303 115091592 -4653306 - AluSx SINE Alu -11 301 4 301 197 15 30 chr13 115091597 115091663 -4653235 - MER94 DNA DNA -59 75 11 1778 215 41 55 chr13 115091745 115092257 -4652641 - MLT1D LTR MaLR 0 505 1 225 195 39 26 chr13 115093205 115093282 -4651616 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 297 0 0 0 chr13 115093322 115093355 -4651543 + (CA)n Simple_repeat Simple_repeat 1 33 0 254 284 0 0 chr13 115094869 115094936 -4649962 + CT-rich Low_complexity Low_complexity 2 68 0 186 296 216 0 chr13 115095424 115095512 -4649386 + L2 LINE L2 3199 3305 -8 1561 176 47 7 chr13 115096671 115096949 -4647949 - AluJo SINE Alu -23 289 1 1993 158 0 0 chr13 115096968 115097265 -4647633 - AluSx SINE Alu -15 297 1 221 293 0 121 chr13 115097497 115097637 -4647261 - MIR SINE MIR -70 192 70 399 297 132 14 chr13 115097657 115097869 -4647029 + MIR SINE MIR 21 257 -5 207 139 0 0 chr13 115098337 115098373 -4646525 + (AATAG)n Simple_repeat Simple_repeat 2 37 0 1991 135 0 10 chr13 115098513 115098849 -4646049 - AluSx SINE Alu 0 333 1 28 0 0 0 chr13 115099640 115099668 -4645230 + AT_rich Low_complexity Low_complexity 1 28 0 2044 154 49 32 chr13 115099891 115100260 -4644638 - THE1C LTR MaLR 0 375 1 192 40 0 0 chr13 115100711 115100736 -4644162 + (TG)n Simple_repeat Simple_repeat 2 26 0 1513 282 132 38 chr13 115102836 115103855 -4641043 - L2 LINE L2 -32 3281 2142 2366 94 3 0 chr13 115103883 115104182 -4640716 + AluSp SINE Alu 1 300 -13 22 0 0 0 chr13 115104231 115104253 -4640645 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 115104380 115104408 -4640490 + AT_rich Low_complexity Low_complexity 1 28 0 183 341 0 0 chr13 115105302 115105343 -4639555 - L2 LINE L2 -93 3179 3139 479 332 42 60 chr13 115105452 115105499 -4639399 + L2 LINE L2 2847 2893 -379 2307 109 0 3 chr13 115105499 115105811 -4639087 - AluSx SINE Alu 0 312 2 479 332 42 60 chr13 115105811 115106197 -4638701 + L2 LINE L2 2893 3272 0 24 32 0 0 chr13 115106199 115106230 -4638668 + AT_rich Low_complexity Low_complexity 1 31 0 198 336 19 28 chr13 115106243 115106350 -4638548 - MIR SINE MIR -87 175 70 565 278 16 21 chr13 115108326 115108520 -4636378 + L1MB1 LINE L1 5963 6155 -13 22 70 0 0 chr13 115109004 115109047 -4635851 + AT_rich Low_complexity Low_complexity 1 43 0 1041 199 70 64 chr13 115109624 115109981 -4634917 - MLT1A1 LTR MaLR 0 365 7 1486 130 7 113 chr13 115110019 115110312 -4634586 - AluSx SINE Alu -50 262 1 276 347 56 81 chr13 115110728 115110907 -4633991 + L2 LINE L2 2560 2727 -587 1922 170 56 0 chr13 115110907 115111231 -4633667 + MER2 DNA MER2_type 2 343 -1 276 347 56 81 chr13 115111231 115111408 -4633490 + L2 LINE L2 2727 2907 -407 294 143 0 0 chr13 115112641 115112690 -4632208 + (TG)n Simple_repeat Simple_repeat 2 50 0 2455 42 0 0 chr13 115116647 115116935 -4627963 - AluY SINE Alu -23 288 1 250 205 0 0 chr13 115117927 115117966 -4626932 - L2 LINE L2 -17 3255 3217 186 71 0 0 chr13 115118072 115118100 -4626798 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1613 243 207 19 chr13 115118504 115119285 -4625613 - Zaphod DNA AcHobo -21 4010 3083 * 1952 233 62 26 chr13 115119280 115119936 -4624962 - Zaphod DNA AcHobo -3202 829 150 28 0 0 0 chr13 115120078 115120106 -4624792 + AT_rich Low_complexity Low_complexity 1 28 0 267 31 0 0 chr13 115120357 115120389 -4624509 + (TC)n Simple_repeat Simple_repeat 2 33 0 198 0 0 0 chr13 115120388 115120410 -4624488 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 12731 220 42 14 chr13 115121587 115127045 -4617853 + L1MA8 LINE L1 1539 6826 -486 1233 149 0 16 chr13 115127049 115127243 -4617655 - AluJb SINE Alu -10 302 112 2479 155 25 6 chr13 115127243 115127713 -4617185 + L1MA8 LINE L1 6814 7292 -20 302 328 48 16 chr13 115127895 115128020 -4616878 + L2 LINE L2 3140 3268 -4 225 154 0 87 chr13 115128302 115128406 -4616492 + (TATATG)n Simple_repeat Simple_repeat 5 99 0 4387 57 12 0 chr13 115128406 115128987 -4615911 - L1PA7 LINE L1 -27 6127 5540 235 342 63 0 chr13 115129219 115129298 -4615600 + L2 LINE L2 3211 3294 -19 272 188 0 31 chr13 115129302 115129366 -4615532 + GA-rich Low_complexity Low_complexity 3 64 0 301 295 21 57 chr13 115129440 115129633 -4615265 - MER5A DNA MER1_type -3 186 1 296 270 58 36 chr13 115130748 115130885 -4614013 + L2 LINE L2 2138 2277 -1037 1449 102 51 0 chr13 115131237 115131453 -4613445 - MER30 DNA MER1_type -1 229 3 376 256 25 16 chr13 115131454 115131575 -4613323 - HsTC2 DNA Tc2 -26 1872 1751 983 256 34 61 chr13 115131585 115132112 -4612786 - L1ME1 LINE L1 -5 6161 5649 675 199 143 34 chr13 115132110 115132376 -4612522 - L1M4 LINE L1 -3400 2746 2452 * 277 242 110 77 chr13 115132417 115132520 -4612378 - HsTC2b DNA Tc2 -1676 219 106 1897 161 0 23 chr13 115132520 115132830 -4612068 - AluSx SINE Alu -9 303 1 277 242 110 77 chr13 115132830 115132908 -4611990 - HsTC2b DNA Tc2 -1789 106 32 288 308 53 8 chr13 115133282 115133415 -4611483 + L2 LINE L2 2277 2415 -899 198 209 0 0 chr13 115133433 115133476 -4611422 + (CA)n Simple_repeat Simple_repeat 1 43 0 2551 106 8 16 chr13 115134001 115134379 -4610519 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr13 115135419 115135442 -4609456 + AT_rich Low_complexity Low_complexity 1 23 0 194 211 26 0 chr13 115138051 115138089 -4606809 + MIR SINE MIR 154 192 -70 200 270 0 81 chr13 115138121 115138217 -4606681 + CT-rich Low_complexity Low_complexity 3 78 -94 2283 60 3 3 chr13 115138217 115138518 -4606380 - L1PB1 LINE L1 0 6151 5851 200 270 0 81 chr13 115138518 115138606 -4606292 + CT-rich Low_complexity Low_complexity 78 172 0 264 59 0 0 chr13 115138761 115138795 -4606103 + (TA)n Simple_repeat Simple_repeat 2 35 0 211 340 20 20 chr13 115139147 115139247 -4605651 + MER5A DNA MER1_type 68 167 -22 339 301 24 16 chr13 115139424 115139547 -4605351 + MIR SINE MIR 30 153 -109 628 236 75 12 chr13 115139567 115139728 -4605170 + MER5B DNA MER1_type 1 171 -7 23 0 0 0 chr13 115140271 115140294 -4604604 + AT_rich Low_complexity Low_complexity 1 23 0 2608 149 69 36 chr13 115140613 115140793 -4604105 + L1MA5 LINE L1 4771 4944 -1356 279 0 0 0 chr13 115140793 115140824 -4604074 + (CTAAA)n Simple_repeat Simple_repeat 3 33 0 2608 149 69 36 chr13 115140824 115141462 -4603436 + L1MA5 LINE L1 4944 5617 -683 1920 166 38 30 chr13 115141462 115142008 -4602890 - MLT2A2 LTR ERVL 0 554 1 2786 155 35 50 chr13 115142008 115142628 -4602270 + L1MA5 LINE L1 5613 6223 -77 198 0 0 0 chr13 115143349 115143371 -4601527 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 367 294 40 44 chr13 115144261 115144446 -4600452 + MIR SINE MIR 15 197 -65 1426 156 96 71 chr13 115145228 115145594 -4599304 + THE1C LTR MaLR 1 375 0 486 291 109 32 chr13 115145655 115146030 -4598868 - MARNA DNA Mariner -94 492 89 21 0 0 0 chr13 115146985 115147006 -4597892 + AT_rich Low_complexity Low_complexity 1 21 0 1536 245 67 40 chr13 115148104 115148569 -4596329 + MLT2B1 LTR ERVL 1 483 -37 237 108 0 0 chr13 115148569 115148606 -4596292 + (TG)n Simple_repeat Simple_repeat 2 38 0 1536 245 67 40 chr13 115148606 115148646 -4596252 + MLT2B1 LTR ERVL 483 520 0 2816 104 41 5 chr13 115148761 115149174 -4595724 - MSTA LTR MaLR 0 428 1 1145 218 78 3 chr13 115149309 115149630 -4595268 + MER2 DNA MER2_type 1 345 0 2264 101 0 0 chr13 115150242 115150559 -4594339 + AluSq SINE Alu 1 317 0 387 290 73 0 chr13 115152793 115152917 -4591981 + MIR SINE MIR 47 179 -83 441 295 142 16 chr13 115153150 115153456 -4591442 - L1ME2 LINE L1 -3 6161 5794 949 256 96 6 chr13 115153456 115153769 -4591129 - MER58B DNA MER1_type 0 341 1 441 295 142 16 chr13 115153769 115153849 -4591049 - L1ME2 LINE L1 -370 5794 5726 23 0 0 0 chr13 115154341 115154364 -4590534 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 115154938 115154961 -4589937 + AT_rich Low_complexity Low_complexity 1 23 0 263 347 34 20 chr13 115155077 115155224 -4589674 - L2 LINE L2 -835 2479 2331 1010 211 14 5 chr13 115155294 115155512 -4589386 + MER58A DNA MER1_type 1 220 -4 248 339 39 24 chr13 115156104 115156231 -4588667 + L2 LINE L2 2953 3081 -191 684 316 24 0 chr13 115156236 115156448 -4588450 - MIR SINE MIR 0 262 46 444 311 8 16 chr13 115156489 115156611 -4588287 + L2 LINE L2 3134 3254 -18 650 243 77 12 chr13 115156876 115157123 -4587775 + MLT1C LTR MaLR 1 263 -204 325 301 28 62 chr13 115158022 115158198 -4586700 + MIR SINE MIR 20 189 -73 253 329 12 0 chr13 115158533 115158618 -4586280 + L3 LINE CR1 1282 1367 -210 186 103 0 0 chr13 115160710 115160739 -4584159 + (A)n Simple_repeat Simple_repeat 1 29 0 252 304 200 32 chr13 115160981 115161106 -4583792 - L2 LINE L2 0 3272 3127 2107 75 11 0 chr13 115161517 115161795 -4583103 + L1PA6 LINE L1 5863 6143 -11 245 295 0 0 chr13 115162353 115162414 -4582484 + (CA)n Simple_repeat Simple_repeat 2 62 0 3196 170 46 15 chr13 115163460 115163498 -4581400 - L1MB7 LINE L1 -16 6168 5491 3220 171 47 16 chr13 115163498 115164118 -4580780 - L1MB7 LINE L1 -55 6129 5491 193 353 94 12 chr13 115165624 115165709 -4579189 + L2 LINE L2 3126 3217 -55 24 0 0 0 chr13 115166076 115166100 -4578798 + AT_rich Low_complexity Low_complexity 1 24 0 1469 185 94 29 chr13 115169234 115169575 -4575323 - MLT1A1 LTR MaLR -2 363 1 2468 176 24 2 chr13 115170473 115170898 -4574000 + Tigger2a DNA MER2_type 1 434 0 2626 255 11 23 chr13 115171250 115171909 -4572989 - MER82 DNA MER2_type -1 652 2 191 323 138 39 chr13 115172795 115173027 -4571871 - MIR SINE MIR 0 262 8 2940 138 11 7 chr13 115174523 115174972 -4569926 - L1PA13 LINE L1 -11 6152 5702 461 285 65 11 chr13 115176447 115176633 -4568265 + HAL1 LINE L1 1458 1653 -854 243 284 97 15 chr13 115176629 115176763 -4568135 + HAL1 LINE L1 1979 2123 -384 * 240 200 0 0 chr13 115177146 115177206 -4567692 + GA-rich Low_complexity Low_complexity 2 61 0 183 373 18 9 chr13 115177512 115177622 -4567276 - MIR SINE MIR -11 251 141 548 281 127 55 chr13 115177651 115178036 -4566862 + LTR16A1 LTR ERVL 43 455 -2 407 247 21 0 chr13 115178041 115178138 -4566760 - MIR SINE MIR -123 139 41 391 254 58 35 chr13 115178628 115178801 -4566097 + MER53 DNA DNA 1 177 -12 * 453 271 26 0 chr13 115178650 115178805 -4566093 - MER53 DNA DNA -12 177 19 230 221 0 44 chr13 115179341 115179409 -4565489 - L1ME3A LINE L1 -208 6031 5967 1692 119 71 42 chr13 115179409 115179715 -4565183 - MLT1B LTR MaLR 0 390 76 1637 149 66 54 chr13 115179715 115180050 -4564848 - MER44D DNA MER2_type 0 609 1 282 161 0 81 chr13 115180062 115180124 -4564774 - MLT1B LTR MaLR -317 57 1 782 299 47 49 chr13 115180127 115180740 -4564158 - L1ME3A LINE L1 -263 5968 5357 15679 138 41 19 chr13 115180826 115183069 -4561829 - Tigger4(Zombi) DNA MER2_type 0 2731 423 2539 70 3 3 chr13 115183069 115183381 -4561517 - L1PA8 LINE L1 -9 6163 5852 15679 138 41 19 chr13 115183381 115183742 -4561156 - Tigger4(Zombi) DNA MER2_type -2308 423 71 326 295 54 22 chr13 115183765 115183989 -4560909 - L1ME3A LINE L1 -4622 1774 1544 380 258 50 40 chr13 115184239 115184437 -4560461 - L1ME3A LINE L1 -5918 287 88 935 178 0 18 chr13 115184561 115184730 -4560168 + FRAM SINE Alu 1 166 -10 403 259 89 45 chr13 115184871 115185184 -4559714 + L1ME4a LINE L1 5791 6117 -4 2804 85 16 14 chr13 115186491 115186854 -4558044 - THE1B LTR MaLR 0 364 1 344 256 31 90 chr13 115187354 115187439 -4557459 + MER113 DNA MER1_type? 4 92 -429 2268 125 0 0 chr13 115187439 115187750 -4557148 - AluSq SINE Alu -2 311 1 344 256 31 90 chr13 115187750 115187761 -4557137 + MER113 DNA MER1_type? 92 102 -419 1920 125 20 7 chr13 115187761 115188057 -4556841 - AluY SINE Alu -11 300 1 344 256 31 90 chr13 115188057 115188182 -4556716 + MER113 DNA MER1_type? 102 213 -308 271 313 62 28 chr13 115189498 115189674 -4555224 + L1ME LINE L1 1 182 -5888 216 0 0 0 chr13 115189859 115189883 -4555015 + (A)n Simple_repeat Simple_repeat 1 24 0 1598 213 34 48 chr13 115189930 115190126 -4554772 + MLT1C LTR MaLR 54 251 -216 2073 111 8 119 chr13 115190126 115190505 -4554393 + MER1B DNA MER1_type 1 337 0 1598 213 34 48 chr13 115190505 115190725 -4554173 + MLT1C LTR MaLR 251 464 -3 368 315 107 9 chr13 115191071 115191264 -4553634 - MIR3 SINE MIR -50 212 2 261 264 74 74 chr13 115192333 115192481 -4552417 - L2 LINE L2 -13 3259 3112 630 269 154 104 chr13 115192487 115192731 -4552167 - MLT1J LTR MaLR -3 508 278 1536 140 63 33 chr13 115192731 115193002 -4551896 - AluJo SINE Alu -25 287 9 630 269 154 104 chr13 115193002 115193230 -4551668 - MLT1J LTR MaLR -233 278 12 193 290 142 37 chr13 115193339 115193501 -4551397 - L2 LINE L2 -149 3123 2945 326 325 75 48 chr13 115194112 115194364 -4550534 + L2 LINE L2 2981 3239 -33 316 325 139 24 chr13 115194990 115195199 -4549699 + L2 LINE L2 2634 2866 -448 214 323 77 23 chr13 115195286 115195416 -4549482 + L2 LINE L2 2926 3062 -210 2396 119 122 10 chr13 115196267 115196652 -4548246 + MSTA LTR MaLR 1 428 0 1417 170 8 12 chr13 115198016 115198269 -4546629 - AluJb SINE Alu -6 306 55 1543 192 66 39 chr13 115198416 115198780 -4546118 + MLT1B LTR MaLR 1 374 -16 2099 191 45 2 chr13 115198957 115199336 -4545562 - L1MB3 LINE L1 -8 6175 5777 369 0 0 0 chr13 115199336 115199377 -4545521 + (TG)n Simple_repeat Simple_repeat 2 42 0 2099 191 45 2 chr13 115199377 115199396 -4545502 - L1MB3 LINE L1 -406 5777 5760 2708 113 19 8 chr13 115199414 115199785 -4545113 - THE1C LTR MaLR 0 375 1 1045 148 54 72 chr13 115199854 115200077 -4544821 + MER20 DNA MER1_type 1 219 0 1973 92 51 24 chr13 115200122 115200416 -4544482 + AluSx SINE Alu 11 312 0 2877 168 17 6 chr13 115200917 115201399 -4543499 - LTR45B LTR ERV1 0 489 3 2927 112 0 3 chr13 115206111 115206487 -4538411 + THE1C LTR MaLR 1 375 0 180 0 0 0 chr13 115207052 115207072 -4537826 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 2184 76 0 38 chr13 115207075 115207364 -4537534 - AluSx SINE Alu -30 282 5 374 343 25 15 chr13 115207592 115207790 -4537108 + L2 LINE L2 2305 2504 -810 315 350 67 33 chr13 115207952 115208192 -4536706 + L2 LINE L2 2557 2804 -510 1008 251 139 10 chr13 115208230 115208632 -4536266 - MLT1C LTR MaLR -8 459 6 273 293 60 90 chr13 115208704 115208871 -4536027 + L2 LINE L2 2919 3080 -233 991 238 44 4 chr13 115209176 115209403 -4535495 - MER106A DNA MER1_type 0 236 1 27 29 0 0 chr13 115209818 115209852 -4535046 + AT_rich Low_complexity Low_complexity 1 34 0 255 257 29 29 chr13 115210876 115210946 -4533952 + L2 LINE L2 3244 3313 0 4638 72 0 5 chr13 115211008 115211579 -4533319 - L1PA7 LINE L1 0 6154 5587 267 295 67 48 chr13 115211711 115211816 -4533082 - L2 LINE L2 0 3313 3207 1609 162 11 8 chr13 115212144 115212410 -4532488 + AluJb SINE Alu 1 267 -45 22 35 0 0 chr13 115212410 115212439 -4532459 + AT_rich Low_complexity Low_complexity 1 29 0 259 237 0 79 chr13 115214020 115214096 -4530802 - MER58B DNA MER1_type -2 339 270 859 256 47 20 chr13 115215179 115215480 -4529418 + L1M4 LINE L1 4640 4948 -1198 507 164 9 17 chr13 115215526 115215642 -4529256 + GA-rich Low_complexity Low_complexity 2 116 0 1439 182 36 21 chr13 115215661 115215996 -4528902 + L1M4 LINE L1 4977 5316 -830 3176 98 5 16 chr13 115216018 115216445 -4528453 - L1PA11 LINE L1 -4 6170 5749 901 215 18 40 chr13 115216534 115216762 -4528136 - MLT2D LTR ERVL -190 224 2 588 171 17 34 chr13 115216762 115216879 -4528019 + L1MC1 LINE L1 6219 6333 0 778 221 13 0 chr13 115217381 115217535 -4527363 + MER58A DNA MER1_type 32 187 -37 2004 151 10 0 chr13 115217543 115217847 -4527051 - AluSq SINE Alu -6 307 1 659 222 198 0 chr13 115217950 115218157 -4526741 + L1MD3 LINE L1 7730 7977 -18 1340 109 0 5 chr13 115218624 115218808 -4526090 - L1PA14 LINE L1 -383 5778 5596 2452 120 69 8 chr13 115218808 115219183 -4525715 + L1PA14 LINE L1 5762 6159 -2 212 281 52 10 chr13 115219791 115219887 -4525011 + MIR3 SINE MIR 104 203 -5 556 278 83 15 chr13 115220334 115220539 -4524359 - MIR SINE MIR -32 230 12 819 138 0 0 chr13 115220632 115220762 -4524136 - AluSg/x SINE Alu -7 303 174 1575 163 0 0 chr13 115220763 115221008 -4523890 - AluSp SINE Alu -68 245 1 25 31 0 0 chr13 115221533 115221565 -4523333 + AT_rich Low_complexity Low_complexity 1 32 0 567 160 22 28 chr13 115222232 115222413 -4522485 + (TG)n Simple_repeat Simple_repeat 1 180 0 623 166 17 22 chr13 115222432 115222613 -4522285 + (TG)n Simple_repeat Simple_repeat 1 180 0 380 297 144 26 chr13 115223388 115223583 -4521315 + MIR SINE MIR 15 232 -30 23 33 0 0 chr13 115224888 115224918 -4519980 + AT_rich Low_complexity Low_complexity 1 30 0 188 196 0 18 chr13 115225599 115225655 -4519243 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 1609 191 112 33 chr13 115225703 115226095 -4518803 - MSTC LTR MaLR 0 428 6 341 263 146 41 chr13 115226144 115226460 -4518438 + L1ME4a LINE L1 5757 6105 -16 4478 193 43 24 chr13 115226594 115228002 -4516896 + L1MA9 LINE L1 4339 5790 -522 2075 138 0 7 chr13 115228002 115228307 -4516591 + L1PB1 LINE L1 5846 6148 -3 4478 193 43 24 chr13 115228307 115228609 -4516289 + L1MA9 LINE L1 5790 6085 -227 420 316 227 16 chr13 115229585 115229714 -4515184 + L1MD3 LINE L1 6513 6613 -1382 333 0 0 0 chr13 115229714 115229751 -4515147 + (TG)n Simple_repeat Simple_repeat 2 38 0 420 316 227 16 chr13 115229751 115230074 -4514824 + L1MD3 LINE L1 6613 7061 -934 * 1936 280 61 9 chr13 115230071 115230706 -4514192 + L1MC4 LINE L1 7238 7905 -137 7984 22 6 0 chr13 115231325 115232204 -4512694 + L1PA4 LINE L1 5272 6155 0 259 308 0 44 chr13 115232268 115232359 -4512539 - MIR SINE MIR -103 159 73 201 265 0 0 chr13 115233141 115233190 -4511708 - L2 LINE L2 0 3272 3224 199 258 121 40 chr13 115234141 115234265 -4510633 - MIR SINE MIR -37 225 92 22 0 0 0 chr13 115236012 115236034 -4508864 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr13 115237252 115237295 -4507603 + (A)n Simple_repeat Simple_repeat 1 43 0 2206 104 7 0 chr13 115237902 115238211 -4506687 - AluSx SINE Alu 0 312 2 1795 193 49 18 chr13 115238785 115239173 -4505725 + L1MB7 LINE L1 5762 6161 -23 222 91 0 0 chr13 115240326 115240359 -4504539 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 189 245 41 20 chr13 115240624 115240673 -4504225 + MIR SINE MIR 25 74 -134 259 310 160 0 chr13 115240861 115240961 -4503937 + L2 LINE L2 3121 3236 -36 1738 127 107 51 chr13 115241445 115241800 -4503098 + THE1C LTR MaLR 1 375 0 251 302 101 22 chr13 115241810 115241949 -4502949 - MIR SINE MIR -1 261 112 23 33 0 0 chr13 115242376 115242406 -4502492 + AT_rich Low_complexity Low_complexity 1 30 0 808 209 23 56 chr13 115242467 115242682 -4502216 + MIR SINE MIR 49 256 -6 288 353 53 20 chr13 115243203 115243447 -4501451 - L2 LINE L2 -998 2316 2065 423 316 45 11 chr13 115243741 115243924 -4500974 - MLT1J LTR MaLR -298 169 1 2176 118 0 16 chr13 115243957 115244262 -4500636 + AluSx SINE Alu 1 300 -12 1447 203 119 47 chr13 115244600 115244726 -4500172 - MLT1C LTR MaLR -2 465 350 1829 167 0 0 chr13 115244726 115245013 -4499885 + AluJo SINE Alu 13 299 -13 1447 203 119 47 chr13 115245013 115245314 -4499584 - MLT1C LTR MaLR -117 350 7 1697 212 39 127 chr13 115245628 115246391 -4498507 + L1MD2 LINE L1 5656 6351 -8 26 0 0 0 chr13 115246539 115246565 -4498333 + AT_rich Low_complexity Low_complexity 1 26 0 356 59 20 0 chr13 115246706 115246757 -4498141 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 494 288 93 50 chr13 115247015 115247317 -4497581 + L2 LINE L2 2999 3313 0 190 387 56 21 chr13 115247483 115247625 -4497273 - L2 LINE L2 -3 3269 3123 198 0 0 0 chr13 115247684 115247706 -4497192 + (A)n Simple_repeat Simple_repeat 1 22 0 1921 141 3 3 chr13 115248924 115249207 -4495691 - AluSq SINE Alu -30 283 1 181 309 82 70 chr13 115250538 115250794 -4494104 + L2 LINE L2 2824 3082 -190 242 260 0 0 chr13 115252963 115253013 -4491885 + polypurine Low_complexity Low_complexity 2 51 0 556 288 93 61 chr13 115254253 115254337 -4490561 - L2 LINE L2 -2 3311 3231 1377 201 19 60 chr13 115254337 115254467 -4490431 + AluJb SINE Alu 2 136 -176 2094 109 25 0 chr13 115254467 115254750 -4490148 + AluSq SINE Alu 1 290 -23 1377 201 19 60 chr13 115254750 115254938 -4489960 + AluJb SINE Alu 136 307 -5 556 288 93 61 chr13 115254938 115255231 -4489667 - L2 LINE L2 -82 3231 2922 2274 86 3 26 chr13 115257597 115257910 -4486988 + AluY SINE Alu 1 306 -5 2128 101 0 0 chr13 115258464 115258731 -4486167 + AluSx SINE Alu 1 267 -45 180 0 0 0 chr13 115258759 115258779 -4486119 + (TTA)n Simple_repeat Simple_repeat 2 21 0 267 291 91 61 chr13 115259063 115259228 -4485670 + MER112 DNA MER1_type 91 260 0 702 254 93 10 chr13 115259539 115259744 -4485154 + MER58A DNA MER1_type 1 222 -2 1787 261 66 62 chr13 115260308 115260470 -4484428 + MER97a DNA MER1_type? 1 161 -733 351 0 0 0 chr13 115260470 115260509 -4484389 + (CA)n Simple_repeat Simple_repeat 2 40 0 1787 261 66 62 chr13 115260509 115260610 -4484288 + MER97a DNA MER1_type? 161 260 -634 1635 203 73 33 chr13 115260610 115261059 -4483839 + MLT1C LTR MaLR 1 467 0 1787 261 66 62 chr13 115261059 115261555 -4483343 + MER97a DNA MER1_type? 260 764 -130 677 76 69 16 chr13 115261559 115262126 -4482772 + (TA)n Simple_repeat Simple_repeat 1 597 0 685 71 65 0 chr13 115262140 115262309 -4482589 + (TA)n Simple_repeat Simple_repeat 1 180 0 49 0 0 0 chr13 115262309 115262358 -4482540 + AT_rich Low_complexity Low_complexity 1 49 0 381 315 9 0 chr13 115262363 115262474 -4482424 + MER97b DNA MER1_type? 938 1049 -4 180 263 0 53 chr13 115262667 115262724 -4482174 - MER5B DNA MER1_type -3 175 122 1762 271 69 2 chr13 115262727 115263265 -4481633 + L1MD2 LINE L1 5560 6133 -226 240 384 33 7 chr13 115263383 115263534 -4481364 - L2 LINE L2 -544 2770 2616 210 337 166 27 chr13 115263535 115263903 -4480995 - L2 LINE L2 -925 2389 1971 404 394 6 0 chr13 115263970 115264140 -4480758 - MIR3 SINE MIR 0 208 38 1537 283 49 13 chr13 115267156 115267495 -4477403 + MER119 DNA MER1_type 38 404 -179 195 69 0 0 chr13 115267495 115267524 -4477374 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1537 283 49 13 chr13 115267524 115267711 -4477187 + MER119 DNA MER1_type 404 583 0 305 356 125 18 chr13 115267932 115268213 -4476685 + HAL1 LINE L1 816 1126 -1381 409 322 181 14 chr13 115268293 115268585 -4476313 + HAL1 LINE L1 1111 1451 -1056 218 176 20 0 chr13 115268900 115268951 -4475947 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 271 204 0 0 chr13 115269118 115269167 -4475731 + L2 LINE L2 3262 3310 -3 2426 99 51 17 chr13 115269444 115269796 -4475102 - THE1B LTR MaLR 0 364 1 390 307 132 49 chr13 115269974 115270947 -4473951 - L1M4 LINE L1 -2854 3292 2230 233 333 42 25 chr13 115271123 115271243 -4473655 - L2 LINE L2 0 3313 3192 227 294 204 25 chr13 115271275 115271476 -4473422 - MIR SINE MIR -19 243 7 315 361 39 14 chr13 115272589 115272797 -4472101 - L2 LINE L2 -221 3051 2839 2068 103 21 0 chr13 115273143 115273434 -4471464 + AluSg SINE Alu 1 297 -13 326 341 44 0 chr13 115276518 115276609 -4468289 - L2 LINE L2 -8 3264 3170 3010 107 113 17 chr13 115276824 115277302 -4467596 + MER1A DNA MER1_type 1 524 -5 204 208 292 14 chr13 115277365 115277437 -4467461 + L2 LINE L2 3221 3312 -1 351 0 0 0 chr13 115277818 115277857 -4467041 + (CA)n Simple_repeat Simple_repeat 1 39 0 370 286 0 0 chr13 115277909 115278014 -4466884 + L1MC5 LINE L1 7799 7903 -58 2111 104 3 0 chr13 115278894 115279193 -4465705 - AluSg SINE Alu -10 300 1 946 90 0 0 chr13 115280490 115280612 -4464286 + AluSg SINE Alu 1 122 -188 1354 92 0 10 chr13 115280660 115280855 -4464043 + AluSg SINE Alu 111 303 -7 1772 178 24 18 chr13 115280871 115281172 -4463726 + MER47A DNA MER2_type 30 335 -1988 1895 116 212 3 chr13 115281172 115281526 -4463372 - MSTA LTR MaLR 0 428 1 1772 178 24 18 chr13 115281526 115281556 -4463342 + MER47A DNA MER2_type 335 363 -3 266 301 54 11 chr13 115282275 115282368 -4462530 - L2 LINE L2 -5 3267 3171 380 328 54 35 chr13 115282424 115282625 -4462273 + MIR3 SINE MIR 2 206 -2 347 339 36 2 chr13 115283979 115284120 -4460778 + MIR SINE MIR 12 160 -48 1400 184 81 75 chr13 115284207 115284592 -4460306 - MLT1B LTR MaLR 0 390 4 254 239 0 39 chr13 115284808 115284963 -4459935 + (TGAG)n Simple_repeat Simple_repeat 2 150 0 226 217 0 33 chr13 115284997 115285089 -4459809 + (TGAG)n Simple_repeat Simple_repeat 2 90 0 192 102 61 0 chr13 115285943 115285992 -4458906 + (TATAA)n Simple_repeat Simple_repeat 1 52 0 288 77 0 0 chr13 115287613 115287652 -4457246 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 183 42 0 0 chr13 115292401 115292425 -4452473 + (CAA)n Simple_repeat Simple_repeat 1 24 0 415 229 189 29 chr13 115292550 115292725 -4452173 + MIR SINE MIR 59 261 -1 280 291 93 39 chr13 115293330 115293512 -4451386 - MIR SINE MIR -5 257 66 300 277 119 40 chr13 115293662 115293864 -4451034 + MLT1K LTR MaLR 151 368 -220 597 235 67 39 chr13 115293924 115294103 -4450795 + MER5A DNA MER1_type 6 189 0 26 30 0 0 chr13 115294213 115294246 -4450652 + AT_rich Low_complexity Low_complexity 1 33 0 243 0 0 0 chr13 115295151 115295178 -4449720 + (TG)n Simple_repeat Simple_repeat 1 27 0 199 283 0 0 chr13 115295289 115295335 -4449563 - L2 LINE L2 0 3272 3227 1879 151 3 0 chr13 115297495 115297806 -4447092 + AluSx SINE Alu 1 312 0 270 333 14 7 chr13 115298620 115298764 -4446134 - MLT1L LTR MaLR -33 582 438 246 354 0 13 chr13 115299145 115299224 -4445674 + L3 LINE CR1 1500 1577 0 5215 118 111 27 chr13 115299236 115300707 -4444191 - pTR5 LTR ERV1 0 2438 280 374 302 89 43 chr13 115300714 115300972 -4443926 - L2 LINE L2 -13 3300 3031 212 259 76 57 chr13 115301796 115301954 -4442944 - L2 LINE L2 -881 2433 2273 2055 105 17 0 chr13 115302160 115302456 -4442442 + AluSx SINE Alu 1 301 -11 240 324 136 59 chr13 115303491 115304533 -4440365 - L2 LINE L2 -66 3206 2043 661 230 156 41 chr13 115305894 115306164 -4438734 - MLT1H LTR MaLR -248 301 1 201 194 28 28 chr13 115306392 115306426 -4438472 + (TTTAA)n Simple_repeat Simple_repeat 1 34 -38 1625 148 32 21 chr13 115306426 115306709 -4438189 + AluJo SINE Alu 1 286 -26 201 194 28 28 chr13 115306709 115306746 -4438152 + (TTTAA)n Simple_repeat Simple_repeat 33 72 0 195 229 21 0 chr13 115306865 115306913 -4437985 - MIR SINE MIR -78 130 82 2162 113 0 3 chr13 115307009 115307319 -4437579 + AluSg SINE Alu 1 309 -1 481 270 57 66 chr13 115308243 115308650 -4436248 - L2 LINE L2 -617 2697 2295 450 247 193 7 chr13 115309681 115309831 -4435067 + MER5A DNA MER1_type 11 188 -1 1320 177 20 37 chr13 115309835 115309955 -4434943 + AluJo SINE Alu 6 126 -225 2271 93 0 0 chr13 115309955 115310246 -4434652 - AluSg SINE Alu -19 291 1 1320 177 20 37 chr13 115310246 115310476 -4434422 + AluJo SINE Alu 126 351 0 415 317 201 16 chr13 115313915 115314278 -4430620 + L2 LINE L2 2884 3313 0 555 291 26 56 chr13 115314395 115314663 -4430235 + MLT1J LTR MaLR 233 492 -19 317 204 11 102 chr13 115314881 115314949 -4429949 - L2 LINE L2 0 3313 3254 413 272 209 0 chr13 115314949 115315107 -4429791 + MIR SINE MIR 2 192 -70 245 297 16 0 chr13 115315346 115315410 -4429488 + MLT1I LTR MaLR 6 70 -339 1048 237 98 58 chr13 115315678 115316293 -4428605 + HAL1b LINE L1 435 1073 -275 740 212 0 0 chr13 115316519 115316651 -4428247 - FLAM_A SINE Alu -1 132 1 474 306 83 31 chr13 115317112 115317436 -4427462 - L3b LINE CR1 -98 1485 1145 304 306 102 0 chr13 115317662 115317809 -4427089 + MLT1L LTR MaLR 1 162 -453 752 256 74 49 chr13 115317944 115318164 -4426734 + MLT1L LTR MaLR 324 537 -78 1004 167 56 11 chr13 115318164 115318344 -4426554 + MER5A DNA MER1_type 2 189 0 1989 190 14 14 chr13 115318353 115318716 -4426182 + MLT1A1 LTR MaLR 1 363 -2 752 256 74 49 chr13 115318716 115318770 -4426128 + MLT1L LTR MaLR 544 615 0 2545 65 3 0 chr13 115320438 115320747 -4424151 - AluSp SINE Alu -3 310 1 630 327 25 24 chr13 115320861 115321091 -4423807 + MIR SINE MIR 13 242 -20 24 0 0 0 chr13 115322305 115322329 -4422569 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 115322332 115322352 -4422546 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 222 150 0 0 chr13 115322688 115322728 -4422170 + (T)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr13 115323543 115323563 -4421335 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr13 115325154 115325177 -4419721 + AT_rich Low_complexity Low_complexity 1 23 0 2215 118 0 0 chr13 115325180 115325468 -4419430 - AluSx SINE Alu -24 288 1 295 259 18 0 chr13 115326332 115326444 -4418454 + GA-rich Low_complexity Low_complexity 3 116 0 827 226 131 10 chr13 115330428 115330627 -4414271 + MER58A DNA MER1_type 1 223 -1 24 0 0 0 chr13 115331943 115331967 -4412931 + AT_rich Low_complexity Low_complexity 1 24 0 2298 120 0 0 chr13 115335208 115335517 -4409381 - AluSg SINE Alu -1 309 1 185 264 58 58 chr13 115336352 115336439 -4408459 + MIR SINE MIR 103 189 -73 524 210 85 80 chr13 115336853 115337077 -4407821 + L2 LINE L2 2813 3037 -276 22 0 0 0 chr13 115338787 115338809 -4406089 + AT_rich Low_complexity Low_complexity 1 22 0 2819 13 0 0 chr13 115340175 115340481 -4404417 - AluYb8 SINE Alu -12 306 1 182 282 26 26 chr13 115341438 115341516 -4403382 + MIR SINE MIR 63 140 -68 254 353 37 43 chr13 115342077 115342264 -4402634 + MIR SINE MIR 1 186 -76 2302 102 0 3 chr13 115342597 115342901 -4401997 - AluSq SINE Alu -6 307 5 414 0 0 0 chr13 115343241 115343287 -4401611 + (CA)n Simple_repeat Simple_repeat 2 47 0 2061 104 6 35 chr13 115343356 115343674 -4401224 + AluSg SINE Alu 2 310 0 267 122 0 0 chr13 115345420 115345461 -4399437 - MADE1 DNA Mariner -39 41 1 250 336 56 0 chr13 115346193 115346300 -4398598 - L2 LINE L2 -2 3311 3199 4289 164 17 16 chr13 115347249 115348017 -4396881 + L1MA7 LINE L1 5522 6290 -1 2611 210 31 91 chr13 115348650 115349571 -4395327 + L1M3e LINE L1 380 1245 -5785 348 325 80 18 chr13 115349959 115350122 -4394776 - L2 LINE L2 -332 2981 2809 1624 233 297 0 chr13 115350593 115351092 -4393806 + MER52A LTR ERV1 1 647 -1108 2695 141 36 11 chr13 115352826 115352871 -4392027 + L1MA4 LINE L1 5742 5784 -516 333 0 0 0 chr13 115352871 115352908 -4391990 + (CA)n Simple_repeat Simple_repeat 2 38 0 2695 141 36 11 chr13 115352908 115353336 -4391562 + L1MA4 LINE L1 5784 6227 -73 273 196 0 0 chr13 115353415 115353471 -4391427 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 190 274 34 164 chr13 115353597 115353743 -4391155 - L2 LINE L2 -188 3084 2958 7529 35 1 0 chr13 115354414 115355306 -4389592 - L1P LINE L1 -1749 4397 3505 26 50 0 0 chr13 115358852 115358892 -4386006 + AT_rich Low_complexity Low_complexity 1 40 0 195 162 0 0 chr13 115358899 115358936 -4385962 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 696 234 6 40 chr13 115359260 115359435 -4385463 - FRAM SINE Alu -10 166 1 22 0 0 0 chr13 115359945 115359967 -4384931 + AT_rich Low_complexity Low_complexity 1 22 0 1251 303 5 32 chr13 115359970 115360382 -4384516 + L1 LINE L1 1 401 -5880 1069 228 30 28 chr13 115360378 115360704 -4384194 + L1 LINE L1 2275 2604 -3746 * 12275 47 1 7 chr13 115360805 115362333 -4382565 + L1P LINE L1 820 2339 -3807 339 315 189 19 chr13 115362598 115362868 -4382030 + L2 LINE L2 2485 2800 -514 392 399 72 43 chr13 115362900 115363276 -4381622 + L2 LINE L2 2870 3256 -16 342 320 79 6 chr13 115363883 115364061 -4380837 + L2 LINE L2 3123 3313 0 24 0 0 0 chr13 115364294 115364318 -4380580 + AT_rich Low_complexity Low_complexity 1 24 0 786 286 87 47 chr13 115364427 115364853 -4380045 + MLT1J1 LTR MaLR 4 446 0 306 0 0 0 chr13 115365933 115365967 -4378931 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 30 0 0 0 chr13 115366694 115366724 -4378174 + AT_rich Low_complexity Low_complexity 1 30 0 209 313 50 12 chr13 115366960 115367040 -4377858 + L2 LINE L2 3231 3313 0 289 311 11 0 chr13 115367388 115367478 -4377420 - MER58 DNA MER1_type -121 94 4 230 347 32 63 chr13 115368329 115368519 -4376379 - MER5A DNA MER1_type -3 186 3 631 174 92 0 chr13 115369670 115369779 -4375119 + FLAM_C SINE Alu 2 120 -23 282 289 18 24 chr13 115370326 115370492 -4374406 + CT-rich Low_complexity Low_complexity 2 166 0 3906 231 43 27 chr13 115370868 115372018 -4372880 + Charlie1a DNA MER1_type 7 1174 -281 21 0 0 0 chr13 115372524 115372545 -4372353 + AT_rich Low_complexity Low_complexity 1 21 0 783 176 8 0 chr13 115374017 115374148 -4370750 - FRAM SINE Alu -47 129 1 321 26 0 0 chr13 115374148 115374186 -4370712 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 370 75 101 6 chr13 115374394 115374553 -4370345 + (TA)n Simple_repeat Simple_repeat 1 174 0 42 0 0 0 chr13 115374553 115374595 -4370303 + AT_rich Low_complexity Low_complexity 1 42 0 348 113 82 0 chr13 115374595 115374856 -4370042 + (TA)n Simple_repeat Simple_repeat 1 282 0 200 206 0 0 chr13 115374958 115374992 -4369906 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 666 66 33 49 chr13 115375318 115375501 -4369397 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 181 13 32 chr13 115375515 115375670 -4369228 + (TA)n Simple_repeat Simple_repeat 2 153 0 28 48 0 0 chr13 115376300 115376342 -4368556 + AT_rich Low_complexity Low_complexity 1 42 0 1832 100 0 58 chr13 115376360 115376621 -4368277 + AluSq SINE Alu 1 246 -67 256 220 44 44 chr13 115376641 115376732 -4368166 + MLT1K LTR MaLR 483 573 -15 180 226 38 0 chr13 115376915 115376968 -4367930 + MIR SINE MIR 204 258 -4 768 218 21 75 chr13 115377207 115377446 -4367452 + MIR SINE MIR 7 232 -30 404 256 0 0 chr13 115377556 115377642 -4367256 + MER58B DNA MER1_type 253 338 -3 2191 103 21 0 chr13 115379001 115379292 -4365606 + AluSg SINE Alu 1 297 -13 337 293 45 32 chr13 115382682 115382883 -4362015 - MIR SINE MIR -55 207 8 405 282 27 20 chr13 115385601 115385750 -4359148 - MER5B DNA MER1_type 0 178 29 590 274 11 16 chr13 115385762 115385948 -4358950 + MER5A DNA MER1_type 5 189 0 222 196 0 0 chr13 115386768 115386814 -4358084 + (CGG)n Simple_repeat Simple_repeat 1 46 0 298 274 8 17 chr13 115387443 115387560 -4357338 + (CGG)n Simple_repeat Simple_repeat 2 117 0 225 0 0 0 chr13 115388498 115388523 -4356375 + (CGG)n Simple_repeat Simple_repeat 1 25 0 185 108 27 0 chr13 115389467 115389504 -4355394 + (CCG)n Simple_repeat Simple_repeat 2 39 0 35 41 0 0 chr13 115390120 115390169 -4354729 + GC_rich Low_complexity Low_complexity 1 49 0 32 26 0 0 chr13 115391303 115391342 -4353556 + GC_rich Low_complexity Low_complexity 1 39 0 209 108 14 95 chr13 115391488 115391562 -4353336 + (CGGGGG)n Simple_repeat Simple_repeat 6 73 0 23 0 0 0 chr13 115392533 115392556 -4352342 + AT_rich Low_complexity Low_complexity 1 23 0 292 298 0 0 chr13 115392992 115393086 -4351812 + (TG)n Simple_repeat Simple_repeat 2 95 0 184 262 0 0 chr13 115398474 115398516 -4346382 - MIR SINE MIR -7 255 214 845 299 94 23 chr13 115398562 115398996 -4345902 + LTR40c LTR ERVL 1 465 0 1052 269 115 34 chr13 115399469 115400050 -4344848 + L1MC4a LINE L1 5288 5915 -1893 393 310 162 26 chr13 115400380 115400683 -4344215 - L2 LINE L2 -939 2375 2032 2083 136 3 10 chr13 115401227 115401529 -4343369 - AluSx SINE Alu -12 300 1 298 197 0 0 chr13 115403643 115403704 -4341194 + L1MB5 LINE L1 6095 6155 -19 22 56 0 0 chr13 115403793 115403829 -4341069 + AT_rich Low_complexity Low_complexity 1 36 0 377 248 45 15 chr13 115404390 115404523 -4340375 - L1ME4a LINE L1 -273 5831 5695 228 343 66 7 chr13 115404581 115404718 -4340180 + L2 LINE L2 2422 2566 -748 760 219 81 48 chr13 115405204 115405414 -4339484 - L1MB7 LINE L1 -17 6167 5951 976 301 113 31 chr13 115405883 115406654 -4338244 - L1ME4a LINE L1 -945 5184 4261 2622 33 3 10 chr13 115406654 115406958 -4337940 - AluY SINE Alu -9 302 1 976 301 113 31 chr13 115406958 115407490 -4337408 - L1ME4a LINE L1 -1868 4261 3774 436 230 43 43 chr13 115407867 115408028 -4336870 - L1ME4a LINE L1 -5953 166 6 328 345 83 19 chr13 115409567 115409978 -4334920 - L1MB7 LINE L1 -304 5817 5381 448 300 37 8 chr13 115410416 115410645 -4334253 + L1ME LINE L1 5571 5811 -351 1837 100 0 58 chr13 115411207 115411468 -4333430 + AluSq SINE Alu 1 246 -67 256 220 44 44 chr13 115411488 115411579 -4333319 + MLT1K LTR MaLR 483 573 -15 180 226 38 0 chr13 115411762 115411815 -4333083 + MIR SINE MIR 204 258 -4 768 218 21 75 chr13 115412054 115412293 -4332605 + MIR SINE MIR 7 232 -30 404 256 0 0 chr13 115412403 115412489 -4332409 + MER58B DNA MER1_type 253 338 -3 309 386 46 10 chr13 115413551 115413748 -4331150 + MIR SINE MIR 47 250 -12 326 338 42 63 chr13 115413767 115414146 -4330752 - L2 LINE L2 -4 3268 2898 1418 205 7 0 chr13 115416684 115416957 -4327941 + L1MA3 LINE L1 6026 6300 -5 1519 311 91 55 chr13 115418674 115418918 -4325980 + ERVL LTR ERVL 1894 2128 -3357 1207 173 23 27 chr13 115418918 115419138 -4325760 + MER20 DNA MER1_type 1 219 0 1519 311 91 55 chr13 115419138 115419946 -4324952 + ERVL LTR ERVL 2128 2984 -2501 1508 246 87 37 chr13 115420072 115420661 -4324237 + L1MC5 LINE L1 6924 7541 -420 569 263 172 42 chr13 115424633 115425040 -4319858 + L2 LINE L2 937 1396 -1918 1271 229 100 8 chr13 115425041 115425421 -4319477 - MLT1C LTR MaLR -47 420 6 201 213 262 0 chr13 115425424 115425485 -4319413 + L2 LINE L2 2912 2988 -325 40407 76 8 5 chr13 115427390 115431671 -4313227 - L1PA6 LINE L1 0 6154 1847 2295 103 0 0 chr13 115431671 115431982 -4312916 - AluY SINE Alu 0 311 1 40407 76 8 5 chr13 115431982 115433835 -4311063 - L1PA6 LINE L1 -4307 1847 1 310 284 45 0 chr13 115434193 115434281 -4310617 + MIR SINE MIR 73 164 -98 204 240 0 0 chr13 115434447 115434497 -4310401 + (TA)n Simple_repeat Simple_repeat 2 51 0 191 315 0 0 chr13 115434613 115434667 -4310231 - MIR SINE MIR -69 139 86 21 71 0 0 chr13 115435532 115435574 -4309324 + AT_rich Low_complexity Low_complexity 1 42 0 2777 133 6 2 chr13 115435867 115436333 -4308565 - L1P LINE L1 -2855 3291 2824 6719 73 16 7 chr13 115436340 115437458 -4307440 + L1PA8A LINE L1 5008 6128 -3 567 261 92 4 chr13 115438084 115438344 -4306554 - L1MD2 LINE L1 0 6359 6022 180 0 0 0 chr13 115439615 115439635 -4305263 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 313 309 31 57 chr13 115441546 115441740 -4303158 - MIR SINE MIR -43 219 31 1866 97 23 0 chr13 115442117 115442374 -4302524 + L1MA1 LINE L1 6036 6298 -4 29 0 0 0 chr13 115442374 115442403 -4302495 + AT_rich Low_complexity Low_complexity 1 29 0 202 264 184 0 chr13 115443096 115443183 -4301715 + MIR SINE MIR 36 138 -70 225 0 0 0 chr13 115445618 115445643 -4299255 + (CA)n Simple_repeat Simple_repeat 2 26 0 2025 111 21 4 chr13 115445945 115446253 -4298645 + AluSx SINE Alu 1 313 0 197 279 139 0 chr13 115446741 115446820 -4298078 + MIR3 SINE MIR 108 197 -11 2436 230 28 18 chr13 115447902 115448471 -4296427 - L1MC2 LINE L1 -22 6322 5748 375 326 38 16 chr13 115449727 115449913 -4294985 - MIR SINE MIR -67 141 5 22 35 0 0 chr13 115449991 115450020 -4294878 + AT_rich Low_complexity Low_complexity 1 29 0 813 280 51 35 chr13 115453711 115454121 -4290777 + L1MC/D LINE L1 5170 5572 -828 2175 41 0 0 chr13 115454121 115454366 -4290532 - L1PA5 LINE L1 -3 6151 5907 2213 75 0 0 chr13 115454366 115454633 -4290265 - AluY SINE Alu -13 298 32 813 280 51 35 chr13 115454633 115454697 -4290201 + L1MC/D LINE L1 5571 5656 -744 2506 117 22 6 chr13 115454877 115455069 -4289829 - THE1B LTR MaLR 0 364 162 345 47 0 0 chr13 115455069 115455112 -4289786 + (TG)n Simple_repeat Simple_repeat 2 44 0 2506 117 22 6 chr13 115455112 115455277 -4289621 - THE1B LTR MaLR -202 162 1 2191 105 0 3 chr13 115456207 115456520 -4288378 + AluSq SINE Alu 1 312 0 1879 138 7 11 chr13 115456820 115457143 -4287755 - AluSx SINE Alu 0 322 1 355 323 86 46 chr13 115457354 115457503 -4287395 - HAL1b LINE L1 -674 674 532 2532 142 64 16 chr13 115457503 115457927 -4286971 + MER65A LTR ERV1 1 444 -1 355 323 86 46 chr13 115457927 115458210 -4286688 - HAL1b LINE L1 -816 532 225 4132 112 0 9 chr13 115458960 115459539 -4285359 + L1PB1 LINE L1 5575 6148 -3 292 319 52 9 chr13 115460790 115460906 -4283992 - MER5B DNA MER1_type -54 124 4 207 287 184 40 chr13 115460960 115461183 -4283715 - L2 LINE L2 -498 2816 2562 409 348 46 35 chr13 115461496 115461844 -4283054 - L2 LINE L2 -1004 2310 1959 253 253 46 23 chr13 115461867 115461954 -4282944 - MER5A DNA MER1_type -65 124 36 1683 143 0 53 chr13 115462127 115462427 -4282471 + LTR8 LTR ERV1 304 587 -104 3008 197 73 21 chr13 115462585 115462882 -4282016 + L1MB3 LINE L1 5447 5727 -456 2111 144 0 0 chr13 115462882 115463187 -4281711 + AluSx SINE Alu 1 305 -7 3008 197 73 21 chr13 115463187 115463588 -4281310 + L1MB3 LINE L1 5727 6181 -2 464 158 109 48 chr13 115464658 115464848 -4280050 - MLT1D LTR MaLR -70 435 166 230 231 22 66 chr13 115464994 115465085 -4279813 - MLT1D LTR MaLR -539 87 1 400 115 13 13 chr13 115465098 115465176 -4279722 + (TA)n Simple_repeat Simple_repeat 2 79 0 233 325 100 12 chr13 115465265 115465345 -4279553 + L2 LINE L2 3128 3214 -58 2180 111 13 0 chr13 115465736 115466034 -4278864 + AluSg SINE Alu 1 302 -8 432 304 88 7 chr13 115466133 115466281 -4278617 - MIR SINE MIR -40 222 63 206 314 100 82 chr13 115467354 115467695 -4277203 - L2 LINE L2 -97 3175 2829 2425 286 98 32 chr13 115468262 115469044 -4275854 + L1M4 LINE L1 2666 3395 -2751 339 25 0 0 chr13 115469044 115469084 -4275814 + (CA)n Simple_repeat Simple_repeat 1 40 0 2425 286 98 32 chr13 115469084 115470035 -4274863 + L1M4 LINE L1 3395 4516 -1630 273 167 39 13 chr13 115470039 115470117 -4274781 + (TA)n Simple_repeat Simple_repeat 1 80 0 685 268 71 44 chr13 115470122 115470692 -4274206 + L1M1 LINE L1 4899 5496 -680 2225 139 0 0 chr13 115470739 115471049 -4273849 + AluSx SINE Alu 1 310 -2 236 100 25 0 chr13 115471049 115471089 -4273809 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 1176 276 45 15 chr13 115471185 115471644 -4273254 + L1ME3A LINE L1 5593 6165 -5 731 155 30 0 chr13 115471706 115471942 -4272956 + (TCTA)n Simple_repeat Simple_repeat 1 243 0 1874 210 50 19 chr13 115471947 115472370 -4272528 - MLT1C LTR MaLR 0 467 32 245 333 0 0 chr13 115473199 115473292 -4271606 + MIR SINE MIR 157 249 -13 665 248 12 0 chr13 115475513 115475674 -4269224 + L1MB1 LINE L1 6005 6167 -1 187 333 48 0 chr13 115475684 115475768 -4269130 - L2 LINE L2 -235 3037 2950 191 365 234 0 chr13 115475786 115475893 -4269005 + L2 LINE L2 3139 3270 -2 297 201 0 38 chr13 115475908 115476067 -4268831 + (TA)n Simple_repeat Simple_repeat 1 153 0 261 0 0 0 chr13 115477520 115477549 -4267349 + (A)n Simple_repeat Simple_repeat 1 29 0 290 271 62 31 chr13 115477995 115478091 -4266807 + LTR16C LTR ERVL 393 491 0 950 120 0 27 chr13 115479881 115480065 -4264833 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 892 254 111 80 chr13 115482107 115482682 -4262216 - MLT1G1 LTR MaLR 0 595 3 1853 173 33 3 chr13 115482728 115483063 -4261835 + MLT1A1 LTR MaLR 13 357 -8 2149 110 0 58 chr13 115483955 115484281 -4260617 + AluSx SINE Alu 1 307 -5 2244 101 0 16 chr13 115484281 115484597 -4260301 + AluY SINE Alu 1 311 0 188 324 0 40 chr13 115486225 115486299 -4258599 - L2 LINE L2 -5 3267 3197 402 290 168 7 chr13 115487498 115487653 -4257245 - MER5A DNA MER1_type -6 183 4 205 180 49 0 chr13 115489401 115489462 -4255436 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 350 314 52 35 chr13 115489502 115489674 -4255224 + MER5B DNA MER1_type 1 175 -3 363 311 101 0 chr13 115489933 115490052 -4254846 - L2 LINE L2 -5 3267 3137 681 203 88 64 chr13 115490648 115490849 -4254049 - MIR SINE MIR -60 202 6 194 235 132 29 chr13 115491503 115491571 -4253327 + MIR3 SINE MIR 113 187 -21 6339 117 17 2 chr13 115491782 115492004 -4252894 + L1PA15 LINE L1 4247 4464 -1701 1987 134 0 0 chr13 115492004 115492314 -4252584 + AluSg SINE Alu 3 312 0 6339 117 17 2 chr13 115492314 115492859 -4252039 + L1PA15 LINE L1 4464 5000 -1165 2143 65 0 4 chr13 115492859 115493119 -4251779 + AluY SINE Alu 34 292 -19 6339 117 17 2 chr13 115493119 115494264 -4250634 + L1PA15 LINE L1 5000 6164 -1 3059 122 71 90 chr13 115494594 115495216 -4249682 - MER4B LTR ERV1 0 610 1 233 286 0 107 chr13 115495216 115495322 -4249576 - L2 LINE L2 -8 3264 3171 382 36 0 71 chr13 115495352 115495408 -4249490 - MLT2A2 LTR ERVL 0 453 402 597 128 16 64 chr13 115495409 115495596 -4249302 + (TA)n Simple_repeat Simple_repeat 2 179 0 825 136 102 0 chr13 115495622 115495769 -4249129 - Tigger3(Golem) DNA MER2_type -117 2912 2751 189 107 0 0 chr13 115495769 115495797 -4249101 + (TA)n Simple_repeat Simple_repeat 2 29 0 198 192 0 0 chr13 115495927 115495979 -4248919 + (TA)n Simple_repeat Simple_repeat 2 53 0 2913 74 19 5 chr13 115496093 115496471 -4248427 - MLT2A1 LTR ERVL -61 383 1 282 304 39 81 chr13 115496476 115496808 -4248090 + MLT1I LTR MaLR 79 396 -13 1132 293 103 90 chr13 115496821 115497749 -4247149 - L2 LINE L2 -85 3228 2273 1633 171 57 23 chr13 115497749 115498048 -4246850 + AluJo SINE Alu 1 309 -3 1132 293 103 90 chr13 115498048 115498506 -4246392 - L2 LINE L2 -1040 2273 1822 1553 103 32 5 chr13 115498555 115498768 -4246130 + L1ME1 LINE L1 5561 5767 -397 6297 153 76 11 chr13 115498768 115499270 -4245628 - Tigger3b DNA MER2_type -1797 1231 763 2035 137 0 13 chr13 115499270 115499583 -4245315 - AluSx SINE Alu -1 311 3 6297 153 76 11 chr13 115499583 115499750 -4245148 - Tigger3b DNA MER2_type -2265 763 608 327 78 0 0 chr13 115499750 115499801 -4245097 + (CA)n Simple_repeat Simple_repeat 2 52 0 6297 153 76 11 chr13 115499801 115500286 -4244612 - Tigger3b DNA MER2_type -2420 608 1 1553 103 32 5 chr13 115500286 115500525 -4244373 + L1ME1 LINE L1 5767 6025 -139 850 235 23 5 chr13 115500527 115500744 -4244154 - L1ME LINE L1 -687 5475 5255 243 213 25 0 chr13 115500867 115500947 -4243951 + (TA)n Simple_repeat Simple_repeat 2 83 0 987 197 87 21 chr13 115501997 115502334 -4242564 + MSTD LTR MaLR 1 396 0 2440 87 0 0 chr13 115503414 115503726 -4241172 + AluSx SINE Alu 1 312 0 748 172 18 0 chr13 115504199 115504362 -4240536 + CT-rich Low_complexity Low_complexity 1 166 0 231 277 10 50 chr13 115505817 115505918 -4238980 + HAL1b LINE L1 328 424 -924 2270 110 0 3 chr13 115506082 115506383 -4238515 + AluSx SINE Alu 1 300 -12 327 338 54 25 chr13 115506782 115506986 -4237912 + L1MC/D LINE L1 5564 5773 -2035 1004 224 124 49 chr13 115508625 115509077 -4235821 + MLT1G LTR MaLR 1 554 -36 1870 196 38 28 chr13 115509090 115509385 -4235513 + MLT1C LTR MaLR 1 341 -126 2065 137 161 11 chr13 115509385 115509757 -4235141 + MSTA LTR MaLR 1 428 0 1870 196 38 28 chr13 115509757 115509886 -4235012 + MLT1C LTR MaLR 341 467 0 425 336 99 49 chr13 115509916 115510321 -4234577 - L3 LINE CR1 -768 809 385 1722 213 10 29 chr13 115510740 115511157 -4233741 + L1MD3 LINE L1 7564 7972 -23 236 281 35 0 chr13 115511267 115511324 -4233574 - L2 LINE L2 -5 3267 3209 266 236 56 11 chr13 115511446 115511535 -4233363 + L3 LINE CR1 910 1002 -575 845 155 0 0 chr13 115511728 115511857 -4233041 - L1PB3 LINE L1 -7 6147 6019 1992 135 3 45 chr13 115512042 115512353 -4232545 - AluSx SINE Alu -14 298 1 1976 132 164 34 chr13 115512437 115512816 -4232082 - MSTA LTR MaLR 0 428 1 585 216 189 11 chr13 115512926 115513111 -4231787 + MER20 DNA MER1_type 1 218 -1 390 237 52 37 chr13 115513536 115513671 -4231227 + Charlie4 DNA MER1_type 1819 1955 -6 605 335 114 4 chr13 115515166 115515393 -4229505 + MIR SINE MIR 6 257 -5 2347 103 0 0 chr13 115515516 115515826 -4229072 + AluY SINE Alu 1 310 -1 793 98 0 0 chr13 115515842 115515944 -4228954 + AluSq/x SINE Alu 2 103 -209 1694 122 0 24 chr13 115515957 115516212 -4228686 + AluSx SINE Alu 64 312 0 257 128 21 0 chr13 115517412 115517459 -4227439 + (TA)n Simple_repeat Simple_repeat 2 49 0 4359 178 15 17 chr13 115518394 115519201 -4225697 + L1MB1 LINE L1 5335 6139 -29 296 213 27 13 chr13 115519341 115519416 -4225482 + MLT1C LTR MaLR 1 76 -314 * 692 150 0 16 chr13 115519411 115519538 -4225360 + 7SK RNA RNA 1 125 -68 460 164 0 0 chr13 115519574 115519647 -4225251 + 7SK RNA RNA 121 193 0 * 1548 216 96 5 chr13 115519640 115520024 -4224874 + MLT1C LTR MaLR 49 467 0 654 299 35 38 chr13 115520453 115520714 -4224184 - LTR16C LTR ERVL -4 487 228 2397 72 3 13 chr13 115520905 115521211 -4223687 - AluY SINE Alu -8 303 1 217 384 80 16 chr13 115521700 115521825 -4223073 - L2 LINE L2 0 3272 3140 2020 129 41 0 chr13 115523647 115523942 -4220956 + AluSx SINE Alu 3 309 -3 2109 132 0 26 chr13 115525619 115525923 -4218975 - AluSx SINE Alu -16 296 1 239 138 0 69 chr13 115526187 115526245 -4218653 - MADE1 DNA Mariner 0 80 27 302 51 0 0 chr13 115527097 115527136 -4217762 + MADE1 DNA Mariner 42 80 0 561 311 44 47 chr13 115527335 115527656 -4217242 + Charlie2b DNA MER1_type 509 828 -1954 * 3524 201 101 34 chr13 115527653 115528817 -4216081 + Charlie2a DNA MER1_type 1620 2861 -1 194 254 97 35 chr13 115529924 115530038 -4214860 - L2 LINE L2 -152 3161 3041 794 258 48 18 chr13 115531794 115532023 -4212875 + L1MC4a LINE L1 6339 6574 -1234 4343 258 62 14 chr13 115532067 115533678 -4211220 + L1ME1 LINE L1 2495 4183 -2357 1572 264 23 17 chr13 115533699 115534169 -4210729 + L1ME1 LINE L1 6085 6557 -3 349 299 164 26 chr13 115534170 115534474 -4210424 + L1MC4a LINE L1 3357 3702 -2838 290 270 17 112 chr13 115535176 115535417 -4209481 + L1MC4a LINE L1 4462 4679 -1861 21 82 0 0 chr13 115535670 115535719 -4209179 + AT_rich Low_complexity Low_complexity 1 49 0 310 368 61 10 chr13 115535731 115536027 -4208871 + L1MC4a LINE L1 5334 5644 -896 289 307 127 6 chr13 115536036 115536202 -4208696 + L1MC4a LINE L1 5653 5838 -2364 225 228 18 0 chr13 115536214 115536271 -4208627 + L1MC4a LINE L1 7105 7162 -1040 1348 89 0 0 chr13 115536271 115536450 -4208448 + AluSg/x SINE Alu 127 305 -7 23 0 0 0 chr13 115537057 115537080 -4207818 + AT_rich Low_complexity Low_complexity 1 23 0 205 170 85 0 chr13 115537155 115537202 -4207696 + T-rich Low_complexity Low_complexity 2 52 0 275 303 7 42 chr13 115537443 115537585 -4207313 + L1M4 LINE L1 2676 2812 -3334 383 274 154 34 chr13 115538205 115538497 -4206401 + L1M4 LINE L1 3622 3948 -2198 277 256 189 61 chr13 115538703 115539078 -4205820 - MLT1H LTR MaLR -18 531 109 26 0 0 0 chr13 115539207 115539233 -4205665 + AT_rich Low_complexity Low_complexity 1 26 0 6838 84 9 8 chr13 115539524 115541189 -4203709 - L1PA14 LINE L1 0 6161 4499 417 231 0 0 chr13 115541429 115541507 -4203391 - MER94 DNA DNA -55 79 2 1879 193 17 3 chr13 115541664 115542037 -4202861 + MLT2C1 LTR ERVL 1 491 -24 394 123 0 0 chr13 115542493 115542550 -4202348 - MLT2C2 LTR ERVL 0 520 464 226 122 0 0 chr13 115542534 115542575 -4202323 - LTR66 LTR ERVL -176 434 394 * 374 132 0 15 chr13 115542583 115542651 -4202247 + (TA)n Simple_repeat Simple_repeat 2 68 0 972 82 0 0 chr13 115542778 115542913 -4201985 + (TA)n Simple_repeat Simple_repeat 2 136 0 1830 201 21 0 chr13 115542916 115543254 -4201644 - MLT2C2 LTR ERVL -48 416 72 332 221 131 16 chr13 115543301 115543423 -4201475 + MIR SINE MIR 26 161 -101 346 268 63 41 chr13 115545198 115545491 -4199407 - MLT1H LTR MaLR 0 549 188 348 118 71 59 chr13 115545551 115545636 -4199262 - MLT1H LTR MaLR -463 86 1 222 337 36 12 chr13 115545668 115545751 -4199147 - L2 LINE L2 -159 3113 3029 375 345 63 61 chr13 115546348 115547218 -4197680 + L2 LINE L2 1536 2407 -907 201 270 0 0 chr13 115547222 115547311 -4197587 + CT-rich Low_complexity Low_complexity 3 91 0 1712 154 45 7 chr13 115547711 115547997 -4196901 + AluSx SINE Alu 1 297 -15 414 172 16 117 chr13 115548051 115548179 -4196719 + MLT1E1 LTR MaLR 51 165 -428 1354 255 42 0 chr13 115548236 115548546 -4196352 + MLT1E1 LTR MaLR 332 654 0 474 200 18 36 chr13 115549526 115549636 -4195262 + Charlie2 DNA MER1_type 41 148 -2714 229 254 55 0 chr13 115549663 115549718 -4195180 + Charlie2 DNA MER1_type 230 287 -2495 4757 96 14 6 chr13 115549718 115550357 -4194541 + L1PA13 LINE L1 5520 6163 0 1645 203 14 30 chr13 115550459 115550685 -4194213 - MLT1A1 LTR MaLR -6 359 140 2961 99 0 0 chr13 115550685 115551049 -4193849 + THE1B LTR MaLR 1 364 0 1645 203 14 30 chr13 115551049 115551187 -4193711 - MLT1A1 LTR MaLR -225 140 1 553 231 93 22 chr13 115551340 115551522 -4193376 + Charlie2a DNA MER1_type 1468 1662 -1200 1020 225 127 0 chr13 115552625 115552861 -4192037 - MLT1A1 LTR MaLR -99 266 1 462 276 96 75 chr13 115552911 115553298 -4191600 + L3 LINE CR1 583 977 -600 309 315 108 14 chr13 115553340 115553635 -4191263 + L1 LINE L1 4369 4691 -1455 10386 85 5 1 chr13 115553635 115554948 -4189950 + ERVL LTR ERVL 1688 3005 -2649 * 12629 77 3 4 chr13 115554915 115556500 -4188398 + ERVL LTR ERVL 3308 4890 -764 357 132 40 26 chr13 115556478 115556554 -4188344 + ERVL LTR ERVL 3843 3919 -1845 * 2488 116 36 28 chr13 115556568 115557184 -4187714 + ERVL LTR ERVL 4885 5462 -143 244 270 22 11 chr13 115557287 115557376 -4187522 + L1MC4 LINE L1 6614 6703 -1339 443 55 0 0 chr13 115557381 115557436 -4187462 + MLT2A2 LTR ERVL 399 453 0 2665 133 5 0 chr13 115557568 115557966 -4186932 + L1PA16 LINE L1 5569 5968 -198 249 304 122 22 chr13 115558001 115558231 -4186667 + L1MC/D LINE L1 5636 5888 -1920 296 219 12 0 chr13 115558264 115558346 -4186552 + (TA)n Simple_repeat Simple_repeat 2 84 0 1497 213 18 71 chr13 115558348 115558742 -4186156 - MLT2D LTR ERVL -41 373 1 2073 96 0 0 chr13 115558880 115559151 -4185747 - AluSg1 SINE Alu -5 304 34 543 301 95 39 chr13 115559231 115559537 -4185361 + L3 LINE CR1 1097 1419 -158 22 0 0 0 chr13 115560070 115560092 -4184806 + AT_rich Low_complexity Low_complexity 1 22 0 474 221 70 41 chr13 115560170 115560342 -4184556 + MLT1C LTR MaLR 73 249 -300 1759 189 31 106 chr13 115560471 115560944 -4183954 + MER67B LTR ERV1 1 253 -261 2088 154 19 79 chr13 115560944 115561360 -4183538 - MSTD LTR MaLR -2 394 4 1759 189 31 106 chr13 115561360 115561604 -4183294 + MER67B LTR ERV1 253 514 0 236 286 143 0 chr13 115561629 115561720 -4183178 + MLT1H LTR MaLR 445 548 -1 228 317 42 17 chr13 115561900 115562020 -4182878 + MLT1-int LTR MaLR 419 541 -830 360 296 76 0 chr13 115562740 115562872 -4182026 + LTR16A LTR ERVL 1 142 -308 7770 190 5 6 chr13 115562879 115565121 -4179777 - L1PA15 LINE L1 -7 6158 3903 2934 152 23 8 chr13 115565122 115565603 -4179295 - Ricksha DNA DNA -1000 2246 1759 443 221 11 0 chr13 115565648 115565743 -4179155 - Ricksha DNA DNA -3144 102 7 772 226 94 8 chr13 115565745 115565980 -4178918 + MLT1C LTR MaLR 211 465 -2 199 275 55 11 chr13 115569469 115569560 -4175338 - MIR3 SINE MIR -10 198 104 2026 101 55 30 chr13 115569617 115569942 -4174956 + THE1B LTR MaLR 1 401 -27 1752 151 0 57 chr13 115570190 115570508 -4174390 + AluJb SINE Alu 1 300 -12 598 171 107 58 chr13 115570704 115570909 -4173989 - MER20 DNA MER1_type -4 215 1 867 73 0 0 chr13 115572316 115572632 -4172266 + AluSc SINE Alu 1 316 0 259 408 32 0 chr13 115572821 115572946 -4171952 - L2 LINE L2 -6 3266 3138 251 323 142 32 chr13 115573278 115574005 -4170893 - L2 LINE L2 -506 2808 2002 307 300 25 17 chr13 115574009 115574129 -4170769 - L2 LINE L2 -2 3311 3191 283 331 37 6 chr13 115574139 115574302 -4170596 - L2 LINE L2 -1311 2003 1836 1965 130 11 11 chr13 115574367 115574651 -4170247 - AluSx SINE Alu -28 284 1 631 372 94 3 chr13 115574666 115575249 -4169649 - L2 LINE L2 -1616 1698 1063 190 158 26 0 chr13 115576935 115576973 -4167925 - MIR SINE MIR -1 261 223 259 277 125 27 chr13 115576988 115577100 -4167798 - L2 LINE L2 -1 3312 3190 328 143 0 0 chr13 115577264 115577313 -4167585 + Charlie5 DNA MER1_type 161 209 -2403 1611 159 22 87 chr13 115578993 115579395 -4165503 + MLT1B LTR MaLR 8 383 -7 2030 124 0 0 chr13 115579556 115579830 -4165068 - AluSx SINE Alu -38 274 1 211 174 0 43 chr13 115580837 115580883 -4164015 - MIR SINE MIR -78 130 87 1934 185 41 39 chr13 115582551 115583011 -4161887 - MLT1C LTR MaLR -6 461 1 583 256 136 47 chr13 115583401 115583659 -4161239 + L1MD3 LINE L1 7009 7289 -706 296 187 173 0 chr13 115583659 115583734 -4161164 + MLT1F1 LTR MaLR 16 103 -464 1896 163 0 7 chr13 115583735 115584042 -4160856 - AluSg SINE Alu -5 305 1 586 194 0 0 chr13 115584044 115584142 -4160756 - AluJo SINE Alu -169 143 46 1431 243 137 13 chr13 115584147 115584681 -4160217 + L1MD3 LINE L1 7396 7995 0 923 85 62 0 chr13 115584693 115584822 -4160076 + AluSp/q SINE Alu 170 306 -7 592 226 102 5 chr13 115585112 115585298 -4159600 - ORSL DNA AcHobo -11 264 61 2010 125 40 0 chr13 115586209 115586506 -4158392 - AluSc SINE Alu 0 309 1 1586 175 44 4 chr13 115587325 115587599 -4157299 + AluJb SINE Alu 6 290 -22 279 0 0 0 chr13 115587695 115587726 -4157172 + (T)n Simple_repeat Simple_repeat 1 31 0 419 308 41 0 chr13 115588123 115588269 -4156629 + MIR SINE MIR 102 253 -9 251 326 54 47 chr13 115589920 115590178 -4154720 + L1ME2 LINE L1 5563 5822 -299 641 346 86 39 chr13 115594007 115594519 -4150379 + MLT1K LTR MaLR 3 538 -50 22 0 0 0 chr13 115595039 115595061 -4149837 + AT_rich Low_complexity Low_complexity 1 22 0 365 209 0 8 chr13 115595551 115595680 -4149218 + GA-rich Low_complexity Low_complexity 1 128 0 61 27 0 0 chr13 115596344 115596419 -4148479 + AT_rich Low_complexity Low_complexity 1 75 0 227 139 0 0 chr13 115596519 115596555 -4148343 + L1ME LINE L1 5624 5659 -462 1762 307 141 3 chr13 115596592 115596947 -4147951 + L1PA5 LINE L1 5747 6150 -4 2592 97 3 24 chr13 115598083 115598466 -4146432 + THE1C LTR MaLR 1 375 0 18958 93 39 4 chr13 115600211 115602825 -4142073 + Charlie3 DNA MER1_type 1 2706 -4 296 204 27 102 chr13 115603005 115603152 -4141746 + L1ME2 LINE L1 5966 6101 -63 868 317 90 8 chr13 115605675 115606063 -4138835 - LTR16C LTR ERVL 0 491 72 471 165 0 24 chr13 115606165 115606250 -4138648 + AluJ/FLAM SINE Alu 2 84 -228 2198 124 0 16 chr13 115607854 115608193 -4136705 + AluSx SINE Alu 1 334 0 1607 228 26 34 chr13 115608535 115608952 -4135946 + MLT2D LTR ERVL 1 414 0 326 348 14 19 chr13 115609435 115609642 -4135256 - MIR SINE MIR -1 261 56 268 315 112 21 chr13 115609865 115610008 -4134890 + MIR SINE MIR 35 190 -72 424 244 79 0 chr13 115610197 115610324 -4134574 + MER96 DNA MER1_type? 3 139 -36 2255 113 0 19 chr13 115611676 115611995 -4132903 - AluSp SINE Alu 0 313 1 221 345 91 0 chr13 115612434 115612544 -4132354 - MIR SINE MIR -90 172 53 1759 109 23 0 chr13 115616360 115616616 -4128282 - L1PA13 LINE L1 -6 6157 5896 210 233 0 0 chr13 115618228 115618271 -4126627 + (CATA)n Simple_repeat Simple_repeat 4 46 0 220 229 76 76 chr13 115618491 115618660 -4126238 - MIR SINE MIR -12 250 83 554 257 89 68 chr13 115619634 115619972 -4124926 - L1ME4a LINE L1 0 6121 5777 433 311 36 41 chr13 115620418 115620566 -4124332 + MLT1J LTR MaLR 288 436 -75 1319 134 10 0 chr13 115620566 115620775 -4124123 + L1MA2 LINE L1 6092 6302 -2 433 311 36 41 chr13 115620775 115620822 -4124076 + MLT1J LTR MaLR 436 482 -29 1107 151 0 17 chr13 115620844 115621016 -4123882 - AluJb SINE Alu -9 303 135 415 290 14 7 chr13 115621039 115621184 -4123714 - L1ME4a LINE L1 -462 5659 5514 235 343 0 9 chr13 115622845 115622950 -4121948 - MIR3 SINE MIR -51 157 54 2069 122 37 0 chr13 115623378 115623674 -4121224 + AluSq SINE Alu 2 308 -5 4796 139 8 10 chr13 115623709 115624500 -4120398 - L1MA3 LINE L1 0 6305 5517 218 298 64 11 chr13 115625484 115625578 -4119320 - L2 LINE L2 -204 3068 2970 1876 212 20 0 chr13 115625909 115626263 -4118635 + MER47A DNA MER2_type 1 361 -5 430 267 79 12 chr13 115627306 115627471 -4117427 + MIR SINE MIR 52 227 -35 261 0 0 0 chr13 115628025 115628054 -4116844 + (T)n Simple_repeat Simple_repeat 1 29 0 187 339 18 9 chr13 115628509 115628618 -4116280 + MIR SINE MIR 46 155 -107 862 344 93 63 chr13 115628695 115629672 -4115226 + L1MEc LINE L1 789 1794 -4602 396 151 93 0 chr13 115630327 115630413 -4114485 + L1MA8 LINE L1 6195 6288 -3 206 322 11 11 chr13 115630811 115630898 -4114000 - L2 LINE L2 0 3313 3227 1250 181 53 0 chr13 115632094 115632321 -4112577 + Tigger5 DNA MER2_type 2085 2323 0 664 308 8 4 chr13 115632719 115632953 -4111945 + L1ME4a LINE L1 5555 5789 -332 280 248 48 9 chr13 115633166 115633271 -4111627 + L1ME4a LINE L1 5941 6049 -72 1505 199 19 16 chr13 115633579 115633900 -4110998 - L1MD2 LINE L1 -1 6358 6037 1432 214 81 24 chr13 115635063 115635432 -4109466 - MLT1B LTR MaLR 0 390 1 324 211 0 0 chr13 115636063 115636139 -4108759 + C-rich Low_complexity Low_complexity 5 80 0 488 247 49 31 chr13 115637178 115637340 -4107558 + MLT1L LTR MaLR 449 613 -2 226 289 32 0 chr13 115637524 115637613 -4107285 + MIR SINE MIR 86 153 -55 810 255 89 41 chr13 115639386 115639657 -4105241 + MLT1A2 LTR MaLR 45 328 -46 446 126 12 48 chr13 115639939 115640106 -4104792 + (TA)n Simple_repeat Simple_repeat 1 161 0 277 244 95 2 chr13 115640807 115640918 -4103980 - MER90 LTR ERV1 -445 169 10 4262 183 30 63 chr13 115641585 115642059 -4102839 - L1MA9 LINE L1 -40 6272 5784 306 50 0 0 chr13 115642059 115642099 -4102799 + (CA)n Simple_repeat Simple_repeat 2 41 0 4262 183 30 63 chr13 115642099 115643024 -4101874 - L1MA9 LINE L1 -528 5784 4883 2266 209 93 4 chr13 115643024 115643573 -4101325 + L1 LINE L1 3832 4429 -1717 * 2345 59 0 0 chr13 115643568 115643854 -4101044 - L1PA5 LINE L1 -2394 3752 3467 * 13684 39 4 0 chr13 115643840 115646076 -4098822 + L1PA5 LINE L1 3761 6001 -153 739 119 37 12 chr13 115646178 115646505 -4098393 + (CA)n Simple_repeat Simple_repeat 1 335 0 2140 101 51 0 chr13 115649061 115649357 -4095541 + AluY SINE Alu 1 311 0 4155 62 5 0 chr13 115650594 115651302 -4093596 + L1PA7 LINE L1 5055 5766 -388 23519 44 0 1 chr13 115651302 115653875 -4091023 + L1PA5 LINE L1 2482 5034 -1120 2367 94 0 0 chr13 115653875 115654174 -4090724 + AluY SINE Alu 1 299 -12 23519 44 0 1 chr13 115654174 115655290 -4089608 + L1PA5 LINE L1 5034 6150 -4 2941 53 19 8 chr13 115655290 115655660 -4089238 + L1PA7 LINE L1 5769 6150 -4 523 198 112 66 chr13 115655677 115655874 -4089024 - MLT1C LTR MaLR -256 211 6 260 188 59 59 chr13 115655882 115655967 -4088931 - L1M4 LINE L1 -1178 4968 4884 * 563 247 26 26 chr13 115655966 115656160 -4088738 - L1ME LINE L1 -3526 2880 2687 509 254 70 33 chr13 115656154 115656497 -4088401 - L1ME LINE L1 -5071 1325 973 * 22 0 0 0 chr13 115657386 115657408 -4087490 + AT_rich Low_complexity Low_complexity 1 22 0 1591 226 20 0 chr13 115658184 115658525 -4086373 - MLT2C1 LTR ERVL 0 397 50 1773 159 0 24 chr13 115658640 115658935 -4085963 + AluJo SINE Alu 1 288 -24 302 113 0 19 chr13 115658935 115658988 -4085910 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 2344 213 61 21 chr13 115659194 115659846 -4085052 + LTR58 LTR ERV1 1 678 -1 274 313 128 44 chr13 115660612 115661204 -4083694 + L1ME4a LINE L1 5254 5896 -225 24 67 0 0 chr13 115661373 115661418 -4083480 + AT_rich Low_complexity Low_complexity 1 45 0 1962 122 0 22 chr13 115661611 115661889 -4083009 + AluSx SINE Alu 14 285 -27 2393 79 0 10 chr13 115662641 115662945 -4081953 - AluSg SINE Alu -9 301 1 694 281 33 5 chr13 115664123 115664333 -4080565 - MIR SINE MIR -27 235 20 526 230 55 0 chr13 115664717 115664882 -4080016 - MER5A DNA MER1_type -5 184 11 227 265 102 41 chr13 115664974 115665072 -4079826 + L2 LINE L2 2973 3076 -196 314 336 0 38 chr13 115665469 115665600 -4079298 + MER94 DNA DNA 6 131 -3 504 0 0 0 chr13 115666927 115666983 -4077915 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 279 0 0 0 chr13 115666985 115667016 -4077882 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2029 125 4 0 chr13 115667019 115667300 -4077598 - AluSx SINE Alu -30 282 1 840 165 0 0 chr13 115667374 115667507 -4077391 - FLAM_C SINE Alu 0 133 1 798 268 131 18 chr13 115667619 115668063 -4076835 - MLT1D LTR MaLR -6 499 6 481 66 0 143 chr13 115668110 115668174 -4076724 + MADE1 DNA Mariner 3 52 -28 2295 108 0 3 chr13 115668174 115668488 -4076410 + AluSq SINE Alu 1 313 0 481 66 0 143 chr13 115668488 115668514 -4076384 + MADE1 DNA Mariner 52 80 0 307 167 28 28 chr13 115670330 115670402 -4074496 - HAL1 LINE L1 -858 1649 1578 1127 192 126 8 chr13 115670444 115670699 -4074199 - MLT1A1 LTR MaLR -75 290 6 506 275 25 62 chr13 115670742 115671062 -4073836 + L2 LINE L2 2919 3226 -87 368 93 0 0 chr13 115671224 115671278 -4073620 - Alu SINE Alu 0 301 248 2299 95 3 0 chr13 115671514 115671808 -4073090 - AluSg SINE Alu -15 295 1 256 284 98 47 chr13 115671976 115672251 -4072647 - HAL1 LINE L1 -1407 1100 812 249 224 30 0 chr13 115672735 115672802 -4072096 + C-rich Low_complexity Low_complexity 1 69 0 753 193 21 0 chr13 115674411 115674556 -4070342 - L1PA16 LINE L1 -141 6025 5878 618 159 8 32 chr13 115674556 115674680 -4070218 + L1PB4 LINE L1 6032 6154 -2 254 250 0 0 chr13 115675004 115675056 -4069842 + MLT2E LTR ERVL 48 99 -529 207 0 0 0 chr13 115676910 115676933 -4067965 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr13 115677583 115677606 -4067292 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 210 71 0 0 chr13 115677624 115677652 -4067246 + (TTA)n Simple_repeat Simple_repeat 3 30 0 16685 89 10 1 chr13 115677653 115680714 -4064184 - L1PA7 LINE L1 -16 6138 3056 11480 125 7 13 chr13 115680714 115682518 -4062380 + L1P LINE L1 1047 2838 -3308 232 255 32 90 chr13 115684404 115684592 -4060306 + L1MEd LINE L1 684 860 -5259 328 279 94 25 chr13 115684618 115684819 -4060079 + L1M4 LINE L1 3350 3564 -2582 621 304 64 25 chr13 115684844 115685338 -4059560 + L1MEd LINE L1 968 1574 -916 231 305 126 40 chr13 115685437 115686366 -4058532 + L1MEd LINE L1 2646 3654 -2475 11962 160 35 18 chr13 115686397 115686683 -4058215 + L1MA4 LINE L1 2935 3215 -3085 2430 87 0 3 chr13 115686683 115686994 -4057904 + AluY SINE Alu 1 310 -1 11962 160 35 18 chr13 115686994 115689507 -4055391 + L1MA4 LINE L1 3215 5777 -523 2722 141 49 7 chr13 115689600 115690088 -4054810 + L1MA4 LINE L1 5770 6274 -26 290 261 25 94 chr13 115690144 115690256 -4054642 + L1MEd LINE L1 3712 3805 -2324 2318 39 4 0 chr13 115690256 115690535 -4054363 - L1PA4 LINE L1 -3 6152 5873 290 261 25 94 chr13 115690535 115690625 -4054273 + L1MEd LINE L1 3805 3900 -2229 541 314 57 35 chr13 115690647 115691239 -4053659 + L1MEd LINE L1 4075 4679 -1450 1025 161 0 126 chr13 115691240 115691349 -4053549 - L1PB4 LINE L1 -6 6150 6029 1659 126 17 0 chr13 115691349 115691587 -4053311 + AluSx SINE Alu 44 285 -27 1025 161 0 126 chr13 115691587 115691600 -4053298 - L1PB4 LINE L1 -127 6029 6016 477 0 0 0 chr13 115691600 115691653 -4053245 + (TA)n Simple_repeat Simple_repeat 2 54 0 1025 161 0 126 chr13 115691653 115691759 -4053139 - L1PB4 LINE L1 -140 6016 5950 188 108 0 27 chr13 115692061 115692098 -4052800 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 392 266 17 118 chr13 115692144 115692381 -4052517 + MIR SINE MIR 16 228 -34 261 208 0 0 chr13 115692647 115692700 -4052198 - MIR3 SINE MIR -1 207 155 350 250 133 0 chr13 115692762 115692890 -4052008 - MIR SINE MIR 0 262 118 2280 242 91 45 chr13 115693806 115694620 -4050278 - L1ME1 LINE L1 0 6166 5316 2055 133 7 0 chr13 115694633 115694935 -4049963 + AluSx SINE Alu 1 304 -8 469 125 14 0 chr13 115694956 115695028 -4049870 - L1MC1 LINE L1 -13 6320 6248 1074 230 34 17 chr13 115695040 115695375 -4049523 - L1ME1 LINE L1 -1107 5039 4674 475 210 0 0 chr13 115696108 115696189 -4048709 + MER58B DNA MER1_type 245 325 -16 244 250 67 67 chr13 115696391 115696511 -4048387 + MIR3 SINE MIR 61 180 -28 2229 159 16 3 chr13 115696727 115697097 -4047801 + MLT1B LTR MaLR 16 390 0 868 165 85 12 chr13 115697781 115697945 -4046953 - AluJb SINE Alu 0 312 137 2119 100 0 0 chr13 115698022 115698291 -4046607 + AluSx SINE Alu 1 269 -43 245 50 0 25 chr13 115698303 115698343 -4046555 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 271 268 27 27 chr13 115699225 115699337 -4045561 + MER5A DNA MER1_type 7 118 -71 196 307 13 0 chr13 115699495 115699570 -4045328 - MER5C DNA MER1_type 0 324 249 404 248 16 32 chr13 115699670 115699795 -4045103 - MER5C DNA MER1_type -200 124 2 201 269 86 65 chr13 115700258 115700351 -4044547 + MIR SINE MIR 30 124 -84 2077 145 9 9 chr13 115700361 115700678 -4044220 - 7SLRNA srpRNA srpRNA -3 317 1 1561 244 77 23 chr13 115700709 115701139 -4043759 + MLT2B1 LTR ERVL 1 453 -67 219 189 0 28 chr13 115701155 115701261 -4043637 + (TA)n Simple_repeat Simple_repeat 1 103 0 270 185 19 0 chr13 115701287 115701341 -4043557 + MLT2B1 LTR ERVL 466 520 0 970 192 39 19 chr13 115701353 115701613 -4043285 + L1ME1 LINE L1 5042 5306 -840 212 192 39 0 chr13 115701614 115701666 -4043232 + GA-rich Low_complexity Low_complexity 2 55 0 3321 251 29 0 chr13 115701675 115702495 -4042403 + L1ME1 LINE L1 5318 6161 -5 181 355 32 37 chr13 115703132 115703349 -4041549 + L2 LINE L2 724 939 -2375 1379 232 17 31 chr13 115703567 115703925 -4040973 - MLT1A1 LTR MaLR -12 353 1 184 301 72 24 chr13 115704440 115704523 -4040375 + L2 LINE L2 3182 3268 -4 2057 194 149 14 chr13 115704586 115705082 -4039816 + MLT1F1 LTR MaLR 5 567 0 180 0 0 0 chr13 115706597 115706617 -4038281 + (TG)n Simple_repeat Simple_repeat 1 20 0 341 274 78 93 chr13 115706645 115706966 -4037932 - L1MC4a LINE L1 -1897 5911 5596 615 206 21 48 chr13 115707023 115707212 -4037686 - MER5A DNA MER1_type 0 189 6 209 353 43 7 chr13 115708270 115708409 -4036489 - MIR SINE MIR -72 190 47 358 266 21 42 chr13 115708627 115708770 -4036128 - MIR SINE MIR -94 168 29 1154 257 73 11 chr13 115709854 115710290 -4034608 + MLT1C LTR MaLR 1 463 -4 200 326 7 7 chr13 115710951 115711086 -4033812 + (TG)n Simple_repeat Simple_repeat 1 135 0 227 276 6 0 chr13 115711099 115711269 -4033629 + (TG)n Simple_repeat Simple_repeat 1 171 0 246 234 0 0 chr13 115711328 115711435 -4033463 + (TG)n Simple_repeat Simple_repeat 2 108 0 2117 107 0 14 chr13 115713121 115713425 -4031473 + AluSq SINE Alu 6 305 0 221 210 0 8 chr13 115713458 115713582 -4031316 + (GCTG)n Simple_repeat Simple_repeat 3 125 0 6996 19 0 1 chr13 115713680 115714477 -4030421 - L1P LINE L1 -1436 4710 3915 5264 27 0 0 chr13 115714477 115715073 -4029825 + L1PA3 LINE L1 5558 6155 0 697 236 19 0 chr13 115715077 115715234 -4029664 + MLT1F LTR MaLR 333 492 -50 602 214 8 8 chr13 115715324 115715450 -4029448 - MLT1F1 LTR MaLR 0 567 442 1105 202 140 71 chr13 115715471 115715921 -4028977 - MER74A LTR ERVL -34 524 44 1047 276 40 8 chr13 115715953 115716335 -4028563 - MLT1F1 LTR MaLR -115 427 31 217 323 111 0 chr13 115716426 115716525 -4028373 + MER5B DNA MER1_type 4 113 -65 197 295 0 33 chr13 115717645 115717706 -4027192 + L3 LINE CR1 1002 1060 -517 409 204 178 26 chr13 115718715 115718906 -4025992 + MLT1D LTR MaLR 285 504 -1 207 0 0 0 chr13 115718928 115718951 -4025947 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr13 115719083 115719104 -4025794 + (TG)n Simple_repeat Simple_repeat 1 21 0 1959 155 0 0 chr13 115720182 115720472 -4024426 - AluSx SINE Alu -22 290 1 293 216 49 49 chr13 115721059 115721161 -4023737 + MER63 DNA MER1_type 44 771 -65 27 0 0 0 chr13 115721328 115721355 -4023543 + AT_rich Low_complexity Low_complexity 1 27 0 1048 258 173 50 chr13 115721440 115721707 -4023191 + L1MC4a LINE L1 5296 5529 -2279 2057 126 0 0 chr13 115721707 115721984 -4022914 + AluSx SINE Alu 1 277 -35 207 0 0 0 chr13 115721990 115722013 -4022885 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1048 258 173 50 chr13 115722013 115722514 -4022384 + L1MC4a LINE L1 5533 6166 -1642 204 300 33 0 chr13 115722784 115722874 -4022024 - MIR SINE MIR -109 153 61 205 270 0 87 chr13 115723346 115723472 -4021426 + C-rich Low_complexity Low_complexity 1 115 0 1622 221 117 15 chr13 115724114 115724634 -4020264 + L1ME2 LINE L1 5562 6134 -30 279 279 76 0 chr13 115724784 115724863 -4020035 + MIR SINE MIR 79 163 -99 1638 229 67 18 chr13 115724891 115725336 -4019562 - MLT1C LTR MaLR 0 467 1 253 123 18 35 chr13 115728882 115728939 -4015959 + T-rich Low_complexity Low_complexity 5 60 0 236 330 11 11 chr13 115730146 115730237 -4014661 + MIR SINE MIR 160 250 -12 21 36 0 0 chr13 115730947 115730975 -4013923 + AT_rich Low_complexity Low_complexity 1 28 0 1652 232 30 26 chr13 115731544 115732009 -4012889 + MLT1C LTR MaLR 1 467 0 230 242 192 20 chr13 115733149 115733248 -4011650 - LTR33 LTR ERVL 0 521 406 489 92 0 0 chr13 115733339 115733449 -4011449 - AluSp SINE Alu 0 328 219 1655 79 5 0 chr13 115733795 115734010 -4010888 - AluSp SINE Alu -95 218 3 551 213 185 75 chr13 115736037 115736492 -4008406 + MLT1H LTR MaLR 45 549 0 22 80 0 0 chr13 115736742 115736792 -4008106 + AT_rich Low_complexity Low_complexity 1 50 0 409 105 0 0 chr13 115736822 115736879 -4008019 - U2 snRNA snRNA -131 57 1 272 277 314 0 chr13 115737692 115737851 -4007047 - MIR SINE MIR -34 228 20 1338 218 90 18 chr13 115738109 115738509 -4006389 + Charlie4a DNA MER1_type 43 471 -37 1526 150 99 26 chr13 115738836 115739109 -4005789 - MER4A LTR ERV1 0 664 372 659 105 0 11 chr13 115739110 115739205 -4005693 - MER4A LTR ERV1 -570 94 1 35 41 0 0 chr13 115741016 115741065 -4003833 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 115742620 115742641 -4002257 + AT_rich Low_complexity Low_complexity 1 21 0 183 343 41 0 chr13 115742675 115742748 -4002150 + L2 LINE L2 3197 3272 0 703 119 16 0 chr13 115742751 115742877 -4002021 + (TGGA)n Simple_repeat Simple_repeat 1 128 0 363 238 12 12 chr13 115743023 115743103 -4001795 - MIR SINE MIR -149 113 34 864 200 118 109 chr13 115744047 115744571 -4000327 + L1ME1 LINE L1 1605 2133 -4407 5437 259 42 27 chr13 115744587 115746718 -3998180 + L1ME1 LINE L1 2432 4563 -1977 2965 205 66 35 chr13 115746761 115747024 -3997874 + L1MB5 LINE L1 5040 5294 -880 1668 193 0 3 chr13 115747024 115747335 -3997563 + AluJb SINE Alu 1 310 -2 2965 205 66 35 chr13 115747335 115747669 -3997229 + L1MB5 LINE L1 5294 5616 -558 1965 79 0 15 chr13 115747669 115747936 -3996962 + AluY SINE Alu 49 311 0 2965 205 66 35 chr13 115747936 115748344 -3996554 + L1MB5 LINE L1 5616 6078 -96 668 127 45 0 chr13 115748807 115748917 -3995981 + L1MB5 LINE L1 6059 6173 -1 562 257 0 22 chr13 115748918 115749097 -3995801 + L1ME1 LINE L1 5392 5566 -974 607 205 96 2 chr13 115749097 115749269 -3995629 + L1PA16 LINE L1 5947 6156 -5 2105 261 63 62 chr13 115749321 115749429 -3995469 + L1ME1 LINE L1 5620 5726 -834 1603 163 7 14 chr13 115749429 115749736 -3995162 + AluSx SINE Alu 1 305 0 2105 261 63 62 chr13 115749736 115750547 -3994351 + L1ME1 LINE L1 5726 6542 -18 30 27 0 0 chr13 115752228 115752265 -3992633 + AT_rich Low_complexity Low_complexity 1 37 0 244 344 159 19 chr13 115753273 115753430 -3991468 + L2 LINE L2 3088 3266 -6 210 114 45 0 chr13 115753631 115753675 -3991223 + (TTAAA)n Simple_repeat Simple_repeat 3 48 0 255 303 166 7 chr13 115755699 115755844 -3989054 - MIR3 SINE MIR -8 200 33 2265 82 0 3 chr13 115758155 115758449 -3986449 + AluSp SINE Alu 1 293 -20 643 141 47 23 chr13 115758465 115758593 -3986305 + FAM SINE Alu 20 150 -35 231 242 105 32 chr13 115758682 115758777 -3986121 + L1ME4a LINE L1 5998 6099 -22 260 70 23 0 chr13 115759389 115759432 -3985466 + (TG)n Simple_repeat Simple_repeat 1 44 0 229 293 243 7 chr13 115759635 115759775 -3985123 - MIR3 SINE MIR -23 185 13 2271 102 0 0 chr13 115761266 115761569 -3983329 - AluSq SINE Alu -10 303 1 551 146 9 239 chr13 115761744 115761932 -3982966 + MER106B DNA MER1_type 1 231 -828 4069 182 10 1 chr13 115761932 115762663 -3982235 + L1MB3 LINE L1 5445 6181 -2 551 146 9 239 chr13 115762663 115762687 -3982211 + MER106B DNA MER1_type 231 259 -800 2720 7 0 3 chr13 115762687 115762993 -3981905 + AluYb8 SINE Alu 1 305 -13 551 146 9 239 chr13 115762993 115763085 -3981813 + MER106B DNA MER1_type 259 1059 0 1816 167 0 0 chr13 115763241 115763535 -3981363 - AluJb SINE Alu -18 294 1 182 309 18 0 chr13 115765203 115765258 -3979640 + L2 LINE L2 3217 3272 0 2002 119 0 19 chr13 115766511 115766821 -3978077 - AluJb SINE Alu -8 304 1 381 304 129 89 chr13 115767777 115768600 -3976298 - L3 LINE CR1 -88 1489 634 373 200 12 48 chr13 115768915 115769080 -3975818 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 225 236 14 56 chr13 115769201 115769273 -3975625 + L3 LINE CR1 578 646 -931 231 241 51 102 chr13 115769274 115769411 -3975487 + L2 LINE L2 3143 3272 0 195 218 0 0 chr13 115770441 115770496 -3974402 + (TA)n Simple_repeat Simple_repeat 1 55 0 2031 129 16 0 chr13 115770538 115770841 -3974057 - AluSx SINE Alu -4 308 1 187 125 0 54 chr13 115771356 115771412 -3973486 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 338 147 15 0 chr13 115772024 115772092 -3972806 + (CA)n Simple_repeat Simple_repeat 2 70 0 216 97 0 0 chr13 115772442 115772473 -3972425 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 686 155 16 0 chr13 115772549 115772678 -3972220 + GA-rich Low_complexity Low_complexity 1 131 0 904 295 31 31 chr13 115773599 115774022 -3970876 + L1ME1 LINE L1 5745 6312 0 201 74 0 0 chr13 115776084 115776111 -3968787 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 204 316 140 9 chr13 115776761 115776875 -3968023 + MIR3 SINE MIR 38 166 -42 268 238 28 112 chr13 115782041 115782184 -3962714 - MIR SINE MIR -8 254 124 731 241 18 36 chr13 115783242 115783462 -3961436 + MER20 DNA MER1_type 1 216 -3 358 168 5 201 chr13 115783491 115783700 -3961198 + MER112 DNA MER1_type 1 168 -92 207 0 0 0 chr13 115787207 115787230 -3957668 + (TG)n Simple_repeat Simple_repeat 2 24 0 1583 115 169 0 chr13 115787230 115787496 -3957402 - AluSx SINE Alu 0 307 1 2078 99 0 0 chr13 115787661 115787970 -3956928 - AluSg SINE Alu 0 309 1 239 299 15 0 chr13 115788352 115788419 -3956479 + L2 LINE L2 3168 3235 -37 202 215 46 46 chr13 115788707 115788772 -3956126 - MIR SINE MIR -111 151 87 287 385 8 8 chr13 115791042 115791159 -3953739 - MIR SINE MIR -127 135 19 374 288 0 72 chr13 115791510 115791557 -3953341 - MER3 DNA MER1_type -13 149 100 2207 82 3 0 chr13 115791557 115791888 -3953010 - AluSp SINE Alu 0 313 2 374 288 0 72 chr13 115791888 115791993 -3952905 - MER3 DNA MER1_type -62 100 8 262 274 183 72 chr13 115792233 115792441 -3952457 + L2 LINE L2 2992 3222 -50 22 0 0 0 chr13 115792622 115792644 -3952254 + AT_rich Low_complexity Low_complexity 1 22 0 200 299 0 26 chr13 115793369 115793446 -3951452 + CT-rich Low_complexity Low_complexity 2 76 0 207 273 129 65 chr13 115796499 115796638 -3948260 + L3 LINE CR1 1304 1451 -126 503 170 75 11 chr13 115797952 115798046 -3946852 - MIR SINE MIR -55 153 54 205 51 51 0 chr13 115799104 115799143 -3945755 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 204 318 117 29 chr13 115799644 115799918 -3944980 + L2 LINE L2 2962 3259 -54 360 0 0 0 chr13 115800605 115800645 -3944253 + (TG)n Simple_repeat Simple_repeat 2 41 0 240 232 14 14 chr13 115802573 115802642 -3942256 + A-rich Low_complexity Low_complexity 4 72 0 1045 112 6 6 chr13 115803763 115803941 -3940957 + (GGA)n Simple_repeat Simple_repeat 2 179 0 2131 105 3 0 chr13 115804229 115804523 -3940375 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr13 115804763 115804784 -3940114 + AT_rich Low_complexity Low_complexity 1 21 0 496 116 74 0 chr13 115804968 115805063 -3939835 + L1MA8 LINE L1 6186 6287 -4 2043 126 0 0 chr13 115805457 115805750 -3939148 + AluSx SINE Alu 1 293 -19 23 33 0 0 chr13 115805823 115805853 -3939045 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 115807161 115807191 -3937707 + AT_rich Low_complexity Low_complexity 1 30 0 260 328 34 8 chr13 115807232 115807351 -3937547 + L1ME LINE L1 5561 5682 -439 2187 83 0 0 chr13 115808113 115808391 -3936507 + AluSx SINE Alu 7 284 -28 204 40 0 0 chr13 115808391 115808416 -3936482 + (TA)n Simple_repeat Simple_repeat 1 25 0 183 328 15 15 chr13 115809070 115809137 -3935761 + MIR3 SINE MIR 141 207 -1 204 250 45 0 chr13 115811713 115811801 -3933097 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 1905 194 22 39 chr13 115813146 115813559 -3931339 + MLT2D LTR ERVL 2 407 -7 25 31 0 0 chr13 115814270 115814302 -3930596 + AT_rich Low_complexity Low_complexity 1 32 0 2825 118 11 9 chr13 115815363 115815802 -3929096 + L1PB2 LINE L1 5712 6151 0 1990 105 14 0 chr13 115816630 115816916 -3927982 - AluSx SINE Alu -22 290 1 2297 208 18 7 chr13 115816917 115817364 -3927534 + MLT2B2 LTR ERVL 2 453 -62 2039 123 0 16 chr13 115817800 115818109 -3926789 + AluSx SINE Alu 1 304 -8 230 321 23 46 chr13 115819123 115819254 -3925644 - MIR SINE MIR -63 145 18 282 334 45 7 chr13 115819303 115819464 -3925434 - MIR SINE MIR -65 143 17 371 155 17 0 chr13 115822117 115822175 -3922723 - Tigger5 DNA MER2_type 0 2323 2265 1023 156 0 0 chr13 115822175 115822354 -3922544 + (TA)n Simple_repeat Simple_repeat 2 180 0 343 321 0 0 chr13 115822354 115822438 -3922460 - L1MC4 LINE L1 -1345 6697 6614 * 395 292 0 0 chr13 115822363 115822452 -3922446 + L1MC4 LINE L1 6615 6703 -1339 235 185 0 0 chr13 115822457 115822511 -3922387 - L1MC4 LINE L1 -1340 6702 6649 1333 154 123 8 chr13 115822511 115822764 -3922134 - AluSg1 SINE Alu -27 282 1 1219 154 11 34 chr13 115822769 115823054 -3921844 - Tigger5 DNA MER2_type -54 2269 94 2569 52 0 0 chr13 115825018 115825328 -3919570 + AluY SINE Alu 1 310 -1 23 33 0 0 chr13 115825358 115825388 -3919510 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr13 115825460 115825510 -3919388 + AT_rich Low_complexity Low_complexity 1 50 0 2126 132 0 0 chr13 115826862 115827149 -3917749 - AluSx SINE Alu -25 287 1 222 204 61 0 chr13 115827770 115827819 -3917079 + L2 LINE L2 3247 3298 -15 2308 89 7 0 chr13 115827828 115828141 -3916757 + AluSx SINE Alu 1 312 0 429 36 0 0 chr13 115829914 115829969 -3914929 + (CA)n Simple_repeat Simple_repeat 2 56 0 207 189 0 0 chr13 115829974 115830027 -3914871 + GA-rich Low_complexity Low_complexity 2 54 0 1137 194 177 7 chr13 115832052 115832362 -3912536 + MLT1A1 LTR MaLR 1 363 -2 453 169 56 0 chr13 115832684 115832844 -3912054 + (TG)n Simple_repeat Simple_repeat 1 169 0 2188 126 3 0 chr13 115836827 115837128 -3907770 + AluSx SINE Alu 1 302 -10 231 310 45 45 chr13 115837139 115837294 -3907604 - MER103 DNA DNA -10 156 2 2382 62 0 29 chr13 115837896 115838202 -3906696 + AluY SINE Alu 2 298 -13 21 0 0 0 chr13 115838445 115838466 -3906432 + AT_rich Low_complexity Low_complexity 1 21 0 814 210 32 5 chr13 115839918 115840104 -3904794 + MER20 DNA MER1_type 29 219 0 23 0 0 0 chr13 115842731 115842754 -3902144 + AT_rich Low_complexity Low_complexity 1 23 0 1980 159 0 0 chr13 115843388 115843696 -3901202 - AluSx SINE Alu -4 308 1 2161 125 0 3 chr13 115845849 115846145 -3898753 - AluSq SINE Alu -18 295 1 287 231 244 6 chr13 115846245 115846401 -3898497 - MIR SINE MIR -21 241 49 568 204 189 0 chr13 115847326 115847481 -3897417 - MER104 DNA Tc2 -3 177 5 405 0 0 0 chr13 115850317 115850362 -3894536 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 139 0 0 chr13 115850364 115850400 -3894498 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 1969 108 4 7 chr13 115851041 115851319 -3893579 - AluSx SINE Alu -35 277 1 859 216 37 16 chr13 115851615 115851860 -3893038 + L1ME3 LINE L1 5895 6144 -18 228 303 15 0 chr13 115851873 115851939 -3892959 + L1ME3A LINE L1 5678 5744 -426 485 239 115 25 chr13 115852024 115852273 -3892625 + L1ME3A LINE L1 5882 6161 -3 2172 114 0 0 chr13 115854560 115854850 -3890048 - AluSx SINE Alu -22 290 1 569 156 34 26 chr13 115854935 115855240 -3889658 + (TA)n Simple_repeat Simple_repeat 1 307 0 420 205 49 40 chr13 115855240 115855700 -3889198 + (CATATA)n Simple_repeat Simple_repeat 1 464 0 499 206 29 0 chr13 115855719 115855894 -3889004 + (TA)n Simple_repeat Simple_repeat 1 180 0 500 154 0 53 chr13 115855923 115856111 -3888787 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 459 242 22 0 chr13 115856112 115856389 -3888509 + (TA)n Simple_repeat Simple_repeat 1 282 0 600 177 0 26 chr13 115856465 115856578 -3888320 + Tigger4(Zombi) DNA MER2_type 1 110 -2621 203 335 82 41 chr13 115857405 115857599 -3887299 - L2 LINE L2 -19 3253 3052 370 248 34 0 chr13 115858036 115858153 -3886745 + GA-rich Low_complexity Low_complexity 2 122 0 3336 201 33 11 chr13 115858254 115859465 -3885433 + L1M2 LINE L1 2253 3493 -3355 2765 130 12 51 chr13 115859566 115860058 -3884840 + L1PA15 LINE L1 5693 6165 0 2987 182 90 1 chr13 115860980 115861992 -3882906 - L1PBa LINE L1 -4935 1928 681 258 243 118 49 chr13 115862155 115862299 -3882599 - L2 LINE L2 -424 2890 2737 1988 156 0 10 chr13 115862324 115862638 -3882260 + AluJb SINE Alu 1 311 -1 1973 99 0 46 chr13 115862776 115863059 -3881839 + AluSx SINE Alu 28 297 -15 242 298 16 73 chr13 115863373 115863497 -3881401 - MIR SINE MIR -80 182 66 311 298 19 29 chr13 115863570 115863674 -3881224 - MER69 DNA AcHobo -2423 103 1 2087 85 0 0 chr13 115864500 115864758 -3880140 - AluSx SINE Alu -52 260 3 693 238 6 12 chr13 115864763 115864923 -3879975 - MER33 DNA MER1_type -165 159 1 682 201 74 7 chr13 115866294 115866443 -3878455 - FRAM SINE Alu -18 158 1 584 226 142 5 chr13 115866865 115867069 -3877829 + MIR SINE MIR 1 232 -30 7328 42 9 0 chr13 115867416 115868573 -3876325 + L1PA4 LINE L1 4972 6151 -4 3155 22 0 0 chr13 115868688 115869051 -3875847 - L1P LINE L1 -872 5274 4912 4286 137 0 5 chr13 115869051 115869693 -3875205 - HERV15 LTR ERV1 -5116 3619 2981 250 305 80 7 chr13 115870047 115870198 -3874700 + Charlie7 DNA MER1_type 2435 2596 -16 774 158 0 8 chr13 115870233 115870366 -3874532 + FLAM_C SINE Alu 2 133 0 8529 87 18 19 chr13 115871081 115872267 -3872631 - HERV15 LTR ERV1 -6973 1762 579 13082 142 25 19 chr13 115872369 115873458 -3871440 + L1P2 LINE L1 3077 4158 -1996 1296 38 0 0 chr13 115873458 115873616 -3871282 + (GGGAA)n Simple_repeat Simple_repeat 4 161 0 13082 142 25 19 chr13 115873616 115874954 -3869944 + L1P2 LINE L1 4158 5520 -634 582 268 80 56 chr13 115875054 115875240 -3869658 - HAL1 LINE L1 -1500 1007 808 1717 162 43 23 chr13 115875240 115875543 -3869355 + AluJo SINE Alu 1 309 -3 582 268 80 56 chr13 115875543 115875695 -3869203 - HAL1 LINE L1 -1699 808 661 346 243 39 0 chr13 115875799 115875902 -3868996 - MER5A DNA MER1_type -80 109 3 679 219 31 19 chr13 115875941 115876101 -3868797 + MER3 DNA MER1_type 48 209 0 2110 94 3 28 chr13 115876257 115876544 -3868354 - AluSx SINE Alu -30 282 3 9150 110 4 5 chr13 115876674 115878014 -3866884 + L1P LINE L1 1554 2891 -3255 1572 124 17 0 chr13 115878114 115878349 -3866549 + L1PA8 LINE L1 5916 6177 0 187 43 0 0 chr13 115878349 115878372 -3866526 + (TAAA)n Simple_repeat Simple_repeat 2 172 0 4084 167 28 9 chr13 115879359 115880043 -3864855 - L1M1 LINE L1 -6181 1384 688 2310 25 0 21 chr13 115881987 115882268 -3862630 - L1PA4 LINE L1 0 6155 5881 12704 63 4 5 chr13 115883117 115884725 -3860173 - L1P LINE L1 -4172 1974 369 315 250 29 0 chr13 115885198 115885266 -3859632 - MER5B DNA MER1_type -15 163 94 9579 81 2 4 chr13 115886345 115887586 -3857312 - L1P3 LINE L1 -4781 1680 442 2163 20 0 0 chr13 115887686 115887930 -3856968 + L1PA3 LINE L1 5908 6151 -4 1041 176 10 5 chr13 115888173 115888372 -3856526 - L1MB1 LINE L1 -1 6167 5968 12225 42 3 0 chr13 115888372 115889880 -3855018 - L1P LINE L1 -2433 3713 2202 564 15 0 0 chr13 115889880 115889947 -3854951 + L1P LINE L1 3726 3792 -2354 445 327 28 19 chr13 115890047 115890258 -3854640 + L1PA12 LINE L1 203 415 -7166 240 281 115 36 chr13 115890630 115890769 -3854129 + L1PA12 LINE L1 1866 2015 -5566 226 302 104 90 chr13 115891021 115891289 -3853609 + L1PBb LINE L1 796 1067 -5782 2135 225 242 6 chr13 115891496 115892296 -3852602 + L1PBb LINE L1 1040 2086 -4762 307 83 0 21 chr13 115892296 115892344 -3852554 + MER4C LTR ERV1 419 465 0 562 207 15 0 chr13 115892344 115892479 -3852419 + L1 LINE L1 3612 3748 -2398 454 187 41 6 chr13 115893032 115893203 -3851695 + GA-rich Low_complexity Low_complexity 3 179 0 26 50 0 0 chr13 115895170 115895210 -3849688 + AT_rich Low_complexity Low_complexity 1 40 0 2141 101 0 7 chr13 115895531 115895829 -3849069 + AluSx SINE Alu 6 301 -11 23 0 0 0 chr13 115897010 115897033 -3847865 + AT_rich Low_complexity Low_complexity 1 23 0 2294 140 22 0 chr13 115897356 115897712 -3847186 - THE1B LTR MaLR 0 364 1 867 127 6 77 chr13 115897910 115898039 -3846859 + L1MB3 LINE L1 6014 6128 -55 2271 52 42 0 chr13 115898039 115898326 -3846572 + AluY SINE Alu 1 299 -12 867 127 6 77 chr13 115898326 115898377 -3846521 + L1MB3 LINE L1 6128 6181 -2 22 35 0 0 chr13 115900712 115900741 -3844157 + AT_rich Low_complexity Low_complexity 1 29 0 878 179 0 0 chr13 115900749 115900905 -3843993 - AluJo SINE Alu -36 276 121 206 269 15 30 chr13 115901735 115901802 -3843096 + GA-rich Low_complexity Low_complexity 3 68 0 252 200 35 0 chr13 115901969 115902054 -3842844 + CT-rich Low_complexity Low_complexity 1 88 0 590 326 14 10 chr13 115903905 115904193 -3840705 + L1MC4 LINE L1 7735 8023 -19 219 146 0 0 chr13 115905127 115905168 -3839730 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 184 228 53 18 chr13 115907755 115907812 -3837086 - MIR SINE MIR -43 219 161 3448 257 63 24 chr13 115908059 115909178 -3835720 + L1MC4a LINE L1 6642 7803 -5 23 33 0 0 chr13 115911263 115911293 -3833605 + AT_rich Low_complexity Low_complexity 1 30 0 226 289 107 16 chr13 115911321 115911442 -3833456 - L2 LINE L2 -2 3311 3180 211 343 46 19 chr13 115911994 115912102 -3832796 - MIR3 SINE MIR -3 205 95 5739 176 22 16 chr13 115912281 115913516 -3831382 + L1MC1 LINE L1 5090 6333 0 490 252 75 0 chr13 115914096 115914203 -3830695 + Charlie8 DNA MER1_type 1 115 -2302 491 184 39 19 chr13 115914848 115914951 -3829947 + L1PB4 LINE L1 6052 6156 0 213 39 0 0 chr13 115915774 115915800 -3829098 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 235 301 72 0 chr13 115919520 115919603 -3825295 + MIR SINE MIR 123 211 -51 291 327 18 0 chr13 115919788 115919901 -3824997 + MER117 DNA MER1_type 6 120 -77 440 293 0 58 chr13 115920763 115920954 -3823944 + (CA)n Simple_repeat Simple_repeat 1 180 0 1528 206 199 21 chr13 115922756 115923192 -3821706 + MLT2B1 LTR ERVL 1 514 -6 2037 87 13 30 chr13 115925245 115925567 -3819331 + AluSq SINE Alu 3 319 0 2241 74 0 20 chr13 115926020 115926316 -3818582 + AluSg SINE Alu 1 290 -20 532 141 0 0 chr13 115928011 115928089 -3816809 - HY3 scRNA scRNA -23 78 1 1530 142 50 57 chr13 115929724 115930042 -3814856 - THE1C LTR MaLR -2 373 58 431 215 138 15 chr13 115932049 115932179 -3812719 + L2 LINE L2 3168 3313 0 207 100 0 0 chr13 115932515 115932545 -3812353 + (T)n Simple_repeat Simple_repeat 1 30 0 2383 99 7 0 chr13 115932691 115932994 -3811904 - AluSq SINE Alu -8 305 1 3554 199 35 23 chr13 115933819 115934616 -3810282 - MER21B LTR ERV1 -52 811 5 475 252 102 0 chr13 115934621 115934768 -3810130 - MIR SINE MIR -25 237 76 36 0 0 0 chr13 115934780 115934816 -3810082 + AT_rich Low_complexity Low_complexity 1 36 0 396 231 162 0 chr13 115936529 115936646 -3808252 + MER5A DNA MER1_type 54 189 0 186 225 0 0 chr13 115936736 115936776 -3808122 + MIR SINE MIR 213 252 -10 * 313 304 0 20 chr13 115936768 115936870 -3808028 - MIR SINE MIR -49 213 114 21 36 0 0 chr13 115937388 115937416 -3807482 + AT_rich Low_complexity Low_complexity 1 28 0 363 382 51 33 chr13 115940873 115941148 -3803750 + L2 LINE L2 2992 3271 -1 28 0 0 0 chr13 115943576 115943604 -3801294 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr13 115944694 115944725 -3800173 + GC_rich Low_complexity Low_complexity 1 31 0 1954 149 0 10 chr13 115947004 115947313 -3797585 + AluSx SINE Alu 3 308 -4 262 268 114 32 chr13 115947524 115947647 -3797251 + MER5A DNA MER1_type 1 133 -56 212 309 103 0 chr13 115947569 115947666 -3797232 - MER5A DNA MER1_type -35 154 48 * 574 234 115 29 chr13 115948077 115948286 -3796612 - MIR SINE MIR -13 249 23 270 258 67 67 chr13 115948784 115948904 -3795994 + MIR SINE MIR 111 230 -32 186 269 39 39 chr13 115950088 115950166 -3794732 + MIR SINE MIR 44 121 -87 1062 197 4 54 chr13 115951204 115951463 -3793435 + L1MD3 LINE L1 7732 7977 -18 2305 118 0 6 chr13 115952585 115952899 -3791999 - AluSx SINE Alu 0 312 1 265 283 125 17 chr13 115953905 115954025 -3790873 - MIR SINE MIR -123 139 7 556 217 6 6 chr13 115954208 115954388 -3790510 + (CA)n Simple_repeat Simple_repeat 1 180 0 521 218 6 0 chr13 115954419 115954584 -3790314 + (CA)n Simple_repeat Simple_repeat 1 166 0 186 300 73 27 chr13 115955290 115955400 -3789498 + MIR3 SINE MIR 91 205 -3 297 267 69 46 chr13 115955766 115955897 -3789001 + MIR SINE MIR 34 167 -95 21 0 0 0 chr13 115956493 115956514 -3788384 + AT_rich Low_complexity Low_complexity 1 21 0 246 105 0 0 chr13 115958354 115958375 -3786523 + (TG)n Simple_repeat Simple_repeat 1 59 0 246 105 0 0 chr13 115958375 115958413 -3786485 + (TG)n Simple_repeat Simple_repeat 2 39 0 221 206 0 16 chr13 115958533 115958596 -3786302 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 1958 157 22 19 chr13 115958634 115958948 -3785950 - L1MB3 LINE L1 -2 6181 5864 1830 152 44 41 chr13 115958948 115959311 -3785587 - THE1B LTR MaLR 0 364 1 1958 157 22 19 chr13 115959311 115959366 -3785532 - L1MB3 LINE L1 -319 5864 5811 215 319 121 9 chr13 115960045 115960161 -3784737 + L2 LINE L2 3141 3269 -3 307 244 58 0 chr13 115961921 115962007 -3782891 - MER5A DNA MER1_type -83 106 16 2234 106 0 7 chr13 115963111 115963412 -3781486 - AluSx SINE Alu -13 299 1 285 374 63 5 chr13 115963491 115963681 -3781217 + MIR SINE MIR 50 250 -12 205 292 113 56 chr13 115966817 115967012 -3777886 - MIR SINE MIR -11 251 46 273 311 65 9 chr13 115969061 115969338 -3775560 - L1M LINE L1 -745 5425 5127 361 260 62 17 chr13 115969351 115969528 -3775370 - L1M4 LINE L1 -1857 4289 4105 428 336 8 0 chr13 115971158 115971292 -3773606 - MIR SINE MIR -19 243 109 205 176 59 20 chr13 115971421 115971472 -3773426 + L2 LINE L2 3241 3293 -20 263 284 76 35 chr13 115971955 115972152 -3772746 + L1ME4a LINE L1 5712 5916 -205 2149 144 36 25 chr13 115972585 115972945 -3771953 + THE1B LTR MaLR 1 364 0 354 290 11 0 chr13 115974511 115974604 -3770294 - MER5B DNA MER1_type -84 94 1 260 53 26 0 chr13 115975655 115975693 -3769205 + (GA)n Simple_repeat Simple_repeat 1 39 0 280 243 29 14 chr13 115977024 115977094 -3767804 + L2 LINE L2 3202 3272 0 1534 133 26 4 chr13 115977457 115977691 -3767207 - AluSg1 SINE Alu -20 289 51 338 257 9 28 chr13 115979874 115979983 -3764915 - MIR SINE MIR -35 227 121 185 132 132 19 chr13 115983426 115983479 -3761419 + L3b LINE CR1 1279 1337 -246 1847 164 3 0 chr13 115987259 115987558 -3757340 - AluSx SINE Alu -12 300 1 1738 161 30 3 chr13 115988383 115988566 -3756332 - AluJb SINE Alu 0 312 116 294 29 0 0 chr13 115988566 115988601 -3756297 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1738 161 30 3 chr13 115988601 115988721 -3756177 - AluJb SINE Alu -196 116 1 226 154 62 77 chr13 115989183 115989248 -3755650 - L1M3de LINE L1 -6279 374 311 294 73 0 0 chr13 115989432 115989473 -3755425 + (ATG)n Simple_repeat Simple_repeat 1 41 0 451 278 52 41 chr13 115989713 115989907 -3754991 + L2 LINE L2 3118 3313 0 2159 82 10 0 chr13 115994117 115994410 -3750488 - AluSg SINE Alu -14 296 1 903 169 50 91 chr13 115994438 115994680 -3750218 + L1MC1 LINE L1 6097 6328 -5 5413 183 100 4 chr13 115994941 115996065 -3748833 - Tigger3b DNA MER2_type 0 1231 1 236 350 36 0 chr13 115999320 115999457 -3745441 - MIR3 SINE MIR -22 186 45 1209 178 22 30 chr13 115999856 116000086 -3744812 - AluJb SINE Alu -84 228 1 1111 59 0 0 chr13 116001331 116001466 -3743432 - AluSq/x SINE Alu -177 135 1 573 178 8 54 chr13 116002285 116002414 -3742484 - MER3 DNA MER1_type -6 203 81 382 278 11 0 chr13 116002425 116002515 -3742383 + L2 LINE L2 3223 3313 0 2096 108 3 0 chr13 116002600 116002906 -3741992 - AluSq SINE Alu -6 307 1 183 265 20 0 chr13 116002971 116003020 -3741878 + MIR SINE MIR 66 115 -93 209 370 37 0 chr13 116005620 116005701 -3739197 - L3b LINE CR1 -88 1495 1412 2070 84 0 14 chr13 116006392 116006701 -3738197 + AluSc SINE Alu 1 305 0 1358 162 8 4 chr13 116006727 116006961 -3737937 + MER46A DNA MER2_type 1 235 -1 314 317 84 75 chr13 116007372 116007694 -3737204 - L3 LINE CR1 -356 1221 904 1945 101 27 24 chr13 116007694 116008020 -3736878 - AluSg SINE Alu 0 310 1 212 0 36 0 chr13 116008027 116008055 -3736843 + (TTG)n Simple_repeat Simple_repeat 2 30 0 314 317 84 75 chr13 116008055 116008140 -3736758 - L3 LINE CR1 -678 899 802 21 0 0 0 chr13 116010055 116010076 -3734822 + AT_rich Low_complexity Low_complexity 1 21 0 332 348 106 5 chr13 116011721 116011928 -3732970 - MIR SINE MIR -1 261 34 1923 134 3 3 chr13 116013137 116013427 -3731471 + AluSx SINE Alu 6 295 -17 232 298 179 13 chr13 116014200 116014351 -3730547 - MER5A DNA MER1_type -1 188 13 228 288 100 0 chr13 116015931 116016011 -3728887 - MIR3 SINE MIR -5 203 116 722 238 68 5 chr13 116016681 116016887 -3728011 + MER20 DNA MER1_type 1 219 0 224 240 60 0 chr13 116017018 116017068 -3727830 - L2 LINE L2 -1 3271 3219 204 293 41 65 chr13 116017204 116017327 -3727571 + MIR SINE MIR 24 143 -119 30 0 0 0 chr13 116018025 116018055 -3726843 + AT_rich Low_complexity Low_complexity 1 30 0 1996 124 20 0 chr13 116021191 116021497 -3723401 - AluSx SINE Alu 0 312 1 2224 82 7 0 chr13 116022568 116022860 -3722038 + AluY SINE Alu 1 294 -17 218 299 154 17 chr13 116024025 116024142 -3720756 + MIR SINE MIR 54 186 -76 2147 108 0 3 chr13 116024543 116024849 -3720049 + AluSg SINE Alu 1 305 -5 24 32 0 0 chr13 116027451 116027482 -3717416 + AT_rich Low_complexity Low_complexity 1 31 0 322 245 89 128 chr13 116027662 116027919 -3716979 - L2 LINE L2 0 3272 3026 233 217 11 98 chr13 116028248 116028340 -3716558 + L1ME1 LINE L1 6066 6149 -17 1628 88 108 0 chr13 116030035 116030275 -3714623 - AluY SINE Alu -11 300 35 1782 225 107 8 chr13 116030378 116031319 -3713579 - L1ME1 LINE L1 -178 5989 4930 214 326 43 11 chr13 116032793 116032885 -3712013 + MER5A DNA MER1_type 73 167 -22 2899 196 72 30 chr13 116033862 116034566 -3710332 + L1MB5 LINE L1 5441 6174 0 316 330 45 25 chr13 116036291 116036491 -3708407 - MIR SINE MIR -28 234 31 561 132 223 0 chr13 116038808 116038920 -3705978 - MER30 DNA MER1_type 0 230 92 462 86 14 14 chr13 116038920 116038990 -3705908 - THE1C LTR MaLR 0 375 306 31 0 0 0 chr13 116039149 116039180 -3705718 + AT_rich Low_complexity Low_complexity 1 31 0 796 248 49 8 chr13 116039912 116040158 -3704740 + LTR53 LTR ERVL 194 449 -70 347 253 20 80 chr13 116040388 116040637 -3704261 - L1MC5 LINE L1 -274 7687 7454 2013 162 0 0 chr13 116041010 116041306 -3703592 + AluJo SINE Alu 2 297 -15 410 234 136 65 chr13 116042474 116042782 -3702116 + L1ME4a LINE L1 5786 6115 -6 275 294 0 0 chr13 116046326 116046394 -3698504 + T-rich Low_complexity Low_complexity 3 70 0 1461 165 26 107 chr13 116046607 116046953 -3697945 + AluYb8 SINE Alu 1 318 0 184 307 57 34 chr13 116047782 116047870 -3697028 + L2 LINE L2 2113 2202 -1112 1891 184 58 6 chr13 116049936 116050283 -3694615 - MLT1A1 LTR MaLR 0 365 1 1370 129 26 26 chr13 116050283 116050547 -3694351 - MLT1A1-int LTR MaLR 0 1735 1472 244 343 7 50 chr13 116052852 116052992 -3691906 - L2 LINE L2 -928 2386 2253 687 226 5 0 chr13 116053726 116054154 -3690744 + (CA)n Simple_repeat Simple_repeat 1 430 0 483 273 80 7 chr13 116055783 116055933 -3688965 - MIR SINE MIR -82 180 20 589 240 16 0 chr13 116056922 116057051 -3687847 + MIR SINE MIR 106 236 -26 631 305 96 48 chr13 116058434 116058808 -3686090 + L2 LINE L2 2922 3313 0 245 211 77 0 chr13 116061717 116061769 -3683129 + MIR SINE MIR 98 153 -109 1261 252 28 35 chr13 116062243 116062707 -3682191 + L1MB7 LINE L1 5538 5998 -186 663 274 90 0 chr13 116066741 116066942 -3677956 - MIR SINE MIR -10 252 34 184 296 0 0 chr13 116067382 116067436 -3677462 - L3 LINE CR1 -465 1112 1059 2410 100 0 3 chr13 116067604 116067913 -3676985 - AluSx SINE Alu -4 308 1 364 336 162 13 chr13 116067942 116068412 -3676486 - L3 LINE CR1 -29 1548 1009 395 347 94 14 chr13 116068452 116068665 -3676233 - L3 LINE CR1 -702 875 646 1382 85 6 6 chr13 116070165 116070342 -3674556 - AluY SINE Alu -108 203 27 1752 186 0 7 chr13 116071797 116072106 -3672792 + AluJo SINE Alu 1 307 0 4302 176 39 37 chr13 116072358 116073312 -3671586 - L1MA9 LINE L1 -2 6310 5360 1872 148 26 13 chr13 116073312 116073616 -3671282 - AluJo SINE Alu -4 308 1 4302 176 39 37 chr13 116073616 116073955 -3670943 - L1MA9 LINE L1 -952 5360 5023 2091 105 7 11 chr13 116073955 116074240 -3670658 - AluSx SINE Alu -8 304 21 4302 176 39 37 chr13 116074240 116074660 -3670238 - L1MA9 LINE L1 -1289 5023 4577 397 242 109 30 chr13 116074694 116074859 -3670039 - LTR37A LTR ERV1 0 426 249 2757 79 3 6 chr13 116074994 116075350 -3669548 + THE1A LTR MaLR 1 355 0 1129 126 17 0 chr13 116075355 116075529 -3669369 + L1MA2 LINE L1 6128 6304 0 222 228 316 9 chr13 116075630 116075744 -3669154 + L2 LINE L2 3122 3270 -2 239 360 32 16 chr13 116076369 116076494 -3668404 - MIR SINE MIR -26 236 110 1804 161 3 11 chr13 116076886 116077223 -3667675 - AluJo SINE Alu 0 335 1 253 342 17 0 chr13 116077849 116077966 -3666932 + MIR SINE MIR 144 262 0 2282 114 7 0 chr13 116078385 116078692 -3666206 + AluSx SINE Alu 1 309 -3 335 309 28 16 chr13 116078919 116079105 -3665793 + MIR SINE MIR 61 250 -12 359 183 244 0 chr13 116079524 116079606 -3665292 - L1MDa LINE L1 -6260 280 179 2125 144 73 52 chr13 116079606 116079895 -3665003 + MER21A LTR ERV1 26 328 -603 2092 131 0 19 chr13 116079895 116080207 -3664691 - AluSx SINE Alu -6 306 1 2125 144 73 52 chr13 116080207 116080341 -3664557 + MER21A LTR ERV1 328 458 -473 1990 218 42 7 chr13 116080411 116080860 -3664038 + MER21A LTR ERV1 467 931 0 665 220 21 0 chr13 116080863 116081004 -3663894 - L1MDa LINE L1 -6372 168 25 1513 167 50 37 chr13 116081982 116082283 -3662615 + AluJo SINE Alu 1 303 -9 2301 107 0 0 chr13 116082283 116082592 -3662306 + AluSx SINE Alu 4 312 0 2310 68 0 0 chr13 116082595 116082923 -3661975 + AluY SINE Alu 1 328 0 881 175 10 41 chr13 116083642 116083836 -3661062 - MER58A DNA MER1_type 0 224 37 1705 185 10 19 chr13 116084020 116084334 -3660564 + AluJo SINE Alu 1 311 -1 287 317 48 42 chr13 116085470 116085637 -3659261 - L3 LINE CR1 -280 1297 1130 304 358 87 0 chr13 116086164 116086337 -3658561 - MIR SINE MIR -9 253 66 898 202 107 72 chr13 116086422 116086711 -3658187 + MLT1D LTR MaLR 147 451 -54 1898 173 7 0 chr13 116086711 116087017 -3657881 - AluJb SINE Alu -3 309 2 898 202 107 72 chr13 116087017 116087074 -3657824 + MLT1D LTR MaLR 451 505 0 1249 270 122 0 chr13 116087074 116087607 -3657291 + MLT1D-int LTR MaLR 1 598 -773 323 330 68 16 chr13 116088098 116088289 -3656609 + L2 LINE L2 3099 3299 -14 2242 95 7 0 chr13 116088567 116088862 -3656036 - AluSq SINE Alu -10 303 7 2398 76 3 0 chr13 116088881 116089182 -3655716 - AluSc SINE Alu -7 302 1 204 405 76 8 chr13 116091817 116091948 -3652950 + L2 LINE L2 3109 3248 -24 2519 46 3 3 chr13 116092896 116093203 -3651695 + AluY SINE Alu 1 307 -4 195 347 56 0 chr13 116093906 116093978 -3650920 - L2 LINE L2 -5 3267 3192 209 336 164 0 chr13 116093980 116094102 -3650796 + MIR SINE MIR 86 227 -35 2797 75 119 5 chr13 116094251 116094653 -3650245 - LTR7 LTR ERV1 -2 448 1 2053 142 0 3 chr13 116094824 116095133 -3649765 + AluSx SINE Alu 1 308 -4 559 228 39 88 chr13 116095147 116095432 -3649466 + L1ME3 LINE L1 5679 5949 -213 2067 103 7 0 chr13 116095673 116095979 -3648919 - AluSx SINE Alu 0 308 1 616 293 61 0 chr13 116096252 116096416 -3648482 + MIR SINE MIR 21 194 -68 1629 177 0 20 chr13 116096602 116096922 -3647976 + AluJo SINE Alu 1 312 0 911 212 101 25 chr13 116101388 116101704 -3643194 - MLT1A2 LTR MaLR -34 340 1 1083 24 0 0 chr13 116102247 116102372 -3642526 + AluY SINE Alu 171 295 -16 322 309 119 18 chr13 116102676 116102844 -3642054 + MIR3 SINE MIR 13 197 -11 186 221 65 78 chr13 116103391 116103468 -3641430 + L2 LINE L2 3197 3272 0 355 307 146 42 chr13 116105728 116105940 -3638958 + MIR SINE MIR 29 262 0 238 287 99 10 chr13 116106250 116106351 -3638547 + L2 LINE L2 3204 3313 0 2691 90 30 8 chr13 116106846 116107213 -3637685 - THE1C LTR MaLR 0 375 1 2085 185 62 6 chr13 116108247 116108717 -3636181 + MER82 DNA MER2_type 3 498 -155 1920 202 39 51 chr13 116109822 116109975 -3634923 + L1MB3 LINE L1 5673 5826 -357 2050 138 7 0 chr13 116109975 116110279 -3634619 - AluSx SINE Alu -6 306 1 1920 202 39 51 chr13 116110279 116110635 -3634263 + L1MB3 LINE L1 5826 6176 -7 588 314 115 62 chr13 116112188 116112262 -3632636 + L3 LINE CR1 767 836 -741 2126 107 3 13 chr13 116112262 116112562 -3632336 - AluSx SINE Alu -15 297 1 588 314 115 62 chr13 116112562 116112723 -3632175 + L3 LINE CR1 836 987 -590 2367 54 3 0 chr13 116112723 116113020 -3631878 + AluY SINE Alu 1 298 -13 588 314 115 62 chr13 116113020 116113471 -3631427 + L3 LINE CR1 987 1490 -87 189 0 0 0 chr13 116113911 116113932 -3630966 + (TC)n Simple_repeat Simple_repeat 1 21 0 416 350 55 6 chr13 116115955 116116118 -3628780 + MER91A DNA MER1_type 10 180 -16 410 232 0 0 chr13 116116551 116116633 -3628265 - Tigger5 DNA MER2_type 0 2323 2242 263 184 0 0 chr13 116116630 116116679 -3628219 + Tigger5 DNA MER2_type 2265 2313 -10 * 388 169 13 0 chr13 116116686 116116763 -3628135 - Tigger5 DNA MER2_type -2245 78 1 234 0 0 0 chr13 116116897 116116923 -3627975 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 243 0 0 0 chr13 116116922 116116949 -3627949 + (CA)n Simple_repeat Simple_repeat 2 28 0 284 242 0 11 chr13 116118268 116118359 -3626539 + (TG)n Simple_repeat Simple_repeat 1 90 0 349 218 126 23 chr13 116118981 116119068 -3625830 - L1ME4a LINE L1 -7 6114 6019 2205 84 43 0 chr13 116120876 116121175 -3623723 + AluSq SINE Alu 1 312 -1 870 160 8 0 chr13 116121251 116121382 -3623516 + FLAM_C SINE Alu 1 132 -1 343 304 94 44 chr13 116121574 116121913 -3622985 - LTR16C LTR ERVL -13 478 123 560 174 21 42 chr13 116123425 116123569 -3621329 + L1MD3 LINE L1 6276 6416 -1579 225 274 14 14 chr13 116123570 116123643 -3621255 + AluSg/x SINE Alu 94 166 -134 235 48 0 0 chr13 116123643 116123685 -3621213 + Alu SINE Alu 261 302 0 2276 184 108 0 chr13 116123691 116124229 -3620669 + L1MC3 LINE L1 6419 7014 -771 1946 96 46 36 chr13 116124547 116124850 -3620048 - AluSx SINE Alu -6 306 1 200 253 105 21 chr13 116125049 116125144 -3619754 - MIR SINE MIR -80 182 80 1817 145 0 30 chr13 116129287 116129584 -3615314 + AluJo SINE Alu 15 302 -10 1633 171 7 0 chr13 116129968 116130254 -3614644 + AluJo SINE Alu 22 309 -3 343 279 57 8 chr13 116134002 116134124 -3610774 - Charlie8 DNA MER1_type -2264 153 26 609 223 32 19 chr13 116134210 116134367 -3610531 + Charlie4 DNA MER1_type 1 159 -1802 236 290 94 29 chr13 116134529 116134667 -3610231 + Charlie4 DNA MER1_type 1815 1961 0 1411 164 22 40 chr13 116135475 116135556 -3609342 + AluJo SINE Alu 44 125 -187 411 21 0 0 chr13 116135556 116135604 -3609294 + (CA)n Simple_repeat Simple_repeat 2 49 0 1411 164 22 40 chr13 116135604 116135796 -3609102 + AluJo SINE Alu 125 312 0 2212 104 13 0 chr13 116135799 116136097 -3608801 + AluSp SINE Alu 10 311 -2 186 162 0 54 chr13 116138767 116138804 -3606094 - MIR SINE MIR -116 146 112 453 296 146 5 chr13 116139078 116139298 -3605600 + MIR SINE MIR 1 251 -11 377 269 96 39 chr13 116139737 116139893 -3605005 - MER5B DNA MER1_type -10 168 4 2217 135 0 0 chr13 116140021 116140332 -3604566 - AluSx SINE Alu -1 311 1 1848 169 0 7 chr13 116140339 116140635 -3604263 - AluJo SINE Alu -17 295 2 1761 178 3 17 chr13 116141056 116141354 -3603544 + AluJo SINE Alu 1 294 -18 926 245 17 0 chr13 116141686 116141919 -3602979 + MLT2C2 LTR ERVL 28 264 -200 2015 135 0 0 chr13 116142508 116142790 -3602108 - AluJb SINE Alu -30 282 1 339 182 52 13 chr13 116142869 116142946 -3601952 - MER33 DNA MER1_type -244 80 1 806 256 58 58 chr13 116143574 116144007 -3600891 + MLT1C LTR MaLR 27 459 -8 1697 35 5 0 chr13 116144440 116144643 -3600255 - L1PA5 LINE L1 -3 6151 5948 1781 121 3 90 chr13 116144643 116144966 -3599932 - AluJo SINE Alu -17 295 1 239 318 164 23 chr13 116145385 116145599 -3599299 - MIR SINE MIR -18 244 1 208 226 0 19 chr13 116145628 116145655 -3599243 + A-rich Low_complexity Low_complexity 4 31 -24 1896 137 4 0 chr13 116145655 116145925 -3598973 + AluJb SINE Alu 42 312 0 208 226 0 19 chr13 116145925 116145950 -3598948 + A-rich Low_complexity Low_complexity 31 55 0 2060 145 26 0 chr13 116145980 116146284 -3598614 + AluJo SINE Alu 1 312 0 2588 70 0 9 chr13 116147199 116147515 -3597383 - AluSq SINE Alu 0 313 1 2509 64 3 0 chr13 116148116 116148413 -3596485 + AluSq SINE Alu 1 298 -15 258 43 43 0 chr13 116148413 116148459 -3596439 + L1MB4 LINE L1 6133 6180 0 207 0 0 0 chr13 116149854 116149877 -3595021 + (CCCCCG)n Simple_repeat Simple_repeat 1 23 0 2071 85 4 4 chr13 116150467 116150737 -3594161 - AluSg SINE Alu -1 309 40 2390 156 46 14 chr13 116151217 116151648 -3593250 - MER65A LTR ERV1 0 445 1 1009 157 6 23 chr13 116151705 116151877 -3593021 + AluJo SINE Alu 1 169 -143 507 239 136 11 chr13 116151879 116152055 -3592843 - L1M4 LINE L1 -1454 4692 4495 180 301 101 69 chr13 116152181 116152487 -3592411 + L2 LINE L2 2353 2668 -646 388 318 38 0 chr13 116152666 116152798 -3592100 + L2 LINE L2 3156 3292 -21 303 223 62 92 chr13 116153221 116153351 -3591547 + L2 LINE L2 3184 3309 -4 188 275 58 0 chr13 116153412 116153481 -3591417 + L2 LINE L2 3199 3271 -1 2316 108 0 0 chr13 116153948 116154244 -3590654 + AluSx SINE Alu 1 296 -16 209 312 40 50 chr13 116154317 116154516 -3590382 - L2 LINE L2 -61 3252 3056 2072 159 0 0 chr13 116154777 116155073 -3589825 - AluSx SINE Alu -16 296 1 1741 165 153 32 chr13 116155099 116155205 -3589693 - LTR47A LTR ERVL -1 451 359 2428 99 3 0 chr13 116155205 116155517 -3589381 + AluSq SINE Alu 1 313 0 1741 165 153 32 chr13 116155517 116155810 -3589088 - LTR47A LTR ERVL -93 359 4 208 279 89 38 chr13 116156535 116156614 -3588284 + L2 LINE L2 3152 3234 -38 1312 190 101 21 chr13 116156717 116157026 -3587872 + MLT1B LTR MaLR 1 319 -46 4542 101 3 11 chr13 116157026 116157643 -3587255 + LTR9 LTR ERV1 1 612 0 1312 190 101 21 chr13 116157643 116157691 -3587207 + MLT1B LTR MaLR 319 362 -3 2067 128 3 7 chr13 116158002 116158299 -3586599 + AluSx SINE Alu 4 299 -13 840 137 103 0 chr13 116158515 116158661 -3586237 + FAM SINE Alu 1 161 -14 1675 151 12 68 chr13 116158664 116158989 -3585909 - AluJb SINE Alu -5 307 1 552 122 7 5 chr13 116159110 116159256 -3585642 + AluSx SINE Alu 2 228 -82 467 148 0 0 chr13 116159413 116159494 -3585404 + AluSx SINE Alu 227 307 -5 333 244 56 11 chr13 116160024 116160114 -3584784 - MER5A DNA MER1_type -48 141 48 2163 113 7 0 chr13 116161211 116161504 -3583394 - AluSx SINE Alu -17 295 1 1123 216 44 86 chr13 116162193 116162600 -3582298 + MLT1B LTR MaLR 1 390 0 201 299 126 17 chr13 116163020 116163194 -3581704 - MIR SINE MIR -58 204 12 1035 209 70 0 chr13 116164433 116164634 -3580264 + AluJo SINE Alu 30 244 -68 1871 116 0 8 chr13 116164634 116164884 -3580014 - AluSx SINE Alu -64 248 1 605 203 99 11 chr13 116164894 116165076 -3579822 - L1MC2 LINE L1 0 6344 6147 * 1917 118 5 83 chr13 116165051 116165235 -3579663 - L1MC2 LINE L1 -128 6216 6077 1837 181 6 13 chr13 116165235 116165414 -3579484 - AluJb SINE Alu 0 312 134 2186 122 3 0 chr13 116165414 116165708 -3579190 - AluSc SINE Alu -14 295 1 1837 181 6 13 chr13 116165708 116165842 -3579056 - AluJb SINE Alu -178 134 1 1917 118 5 83 chr13 116165842 116166046 -3578852 - L1MC2 LINE L1 -267 6077 5859 2451 74 10 0 chr13 116166046 116166344 -3578554 + AluY SINE Alu 1 301 -10 600 228 90 0 chr13 116166785 116166890 -3578008 + MLT1C LTR MaLR 1 128 -339 2133 116 0 0 chr13 116166890 116167175 -3577723 - AluSx SINE Alu -11 301 17 600 228 90 0 chr13 116167175 116167236 -3577662 + MLT1C LTR MaLR 128 182 -285 1977 141 7 20 chr13 116167236 116167542 -3577356 - AluJb SINE Alu -10 302 1 1999 201 55 26 chr13 116167543 116168075 -3576823 - L1MDa LINE L1 -3212 3328 2782 2171 139 3 3 chr13 116168103 116168413 -3576485 - AluJo SINE Alu -2 310 1 4161 229 221 30 chr13 116168417 116168605 -3576293 - L1MDa LINE L1 -4333 2207 2056 2894 10 0 0 chr13 116168605 116168913 -3575985 + AluY SINE Alu 1 308 -3 4161 229 221 30 chr13 116168913 116170501 -3574397 - L1MDa LINE L1 -4484 2056 92 187 258 62 93 chr13 116170536 116170633 -3574265 - MIR SINE MIR -72 190 97 626 246 97 67 chr13 116170658 116170988 -3573910 - MLT1C LTR MaLR -92 375 36 30 0 0 0 chr13 116171092 116171122 -3573776 + AT_rich Low_complexity Low_complexity 1 30 0 258 32 0 0 chr13 116171405 116171436 -3573462 + (CA)n Simple_repeat Simple_repeat 2 32 0 1826 187 101 23 chr13 116171646 116171840 -3573058 + MSTB LTR MaLR 1 178 -248 240 35 0 0 chr13 116171840 116171869 -3573029 + (TC)n Simple_repeat Simple_repeat 1 29 0 1826 187 101 23 chr13 116171869 116172069 -3572829 + MSTB LTR MaLR 178 426 0 234 360 43 0 chr13 116172207 116172346 -3572552 - L1M4 LINE L1 -1306 4840 4696 * 1834 264 45 22 chr13 116172345 116172559 -3572339 - L1MB7 LINE L1 -119 6065 5857 2084 147 0 0 chr13 116172559 116172859 -3572039 - AluJb SINE Alu -12 300 1 1834 264 45 22 chr13 116172859 116173318 -3571580 - L1MB7 LINE L1 -327 5857 4430 1931 134 10 0 chr13 116173362 116173654 -3571244 + AluSx SINE Alu 5 299 -13 1044 133 17 39 chr13 116173759 116173939 -3570959 + AluSg/x SINE Alu 123 298 -12 414 192 40 0 chr13 116173952 116174051 -3570847 + L1MD1 LINE L1 2931 3033 -3113 1179 59 0 0 chr13 116174060 116174195 -3570703 + AluSq/x SINE Alu 1 135 -177 2200 100 7 7 chr13 116174195 116174508 -3570390 + AluSx SINE Alu 1 312 0 6733 221 30 48 chr13 116174510 116175160 -3569738 + L1MD1 LINE L1 3044 3704 -2538 2069 117 0 7 chr13 116175160 116175466 -3569432 + AluSx SINE Alu 1 304 0 6733 221 30 48 chr13 116175466 116175478 -3569420 + L1MD1 LINE L1 3704 3715 -2527 3013 3 0 0 chr13 116175478 116175794 -3569104 + AluYb8 SINE Alu 1 316 -2 6733 221 30 48 chr13 116175794 116177162 -3567736 + L1MD1 LINE L1 3715 4998 -1244 1829 161 46 0 chr13 116177162 116177442 -3567456 - AluJo SINE Alu -19 293 1 6733 221 30 48 chr13 116177442 116178642 -3566256 + L1MD1 LINE L1 4998 6218 -24 192 364 0 0 chr13 116178657 116178723 -3566175 + MIR SINE MIR 168 233 -29 288 125 54 0 chr13 116178725 116178781 -3566117 + MER81 DNA DNA 54 112 -2 1507 186 13 57 chr13 116179663 116179794 -3565104 + AluJo SINE Alu 1 136 -176 2480 96 0 0 chr13 116179794 116180106 -3564792 + AluSp SINE Alu 1 312 -1 1507 186 13 57 chr13 116180106 116180292 -3564606 + AluJo SINE Alu 136 304 -8 1686 149 52 48 chr13 116180350 116180659 -3564239 - AluJo SINE Alu 0 312 3 2439 91 0 3 chr13 116181226 116181533 -3563365 + AluSx SINE Alu 1 306 -6 1113 183 10 0 chr13 116181915 116182117 -3562781 - MER3 DNA MER1_type -5 204 1 866 180 88 115 chr13 116182153 116182526 -3562372 + MER34B LTR ERV1 5 367 -198 2283 107 13 7 chr13 116182586 116182896 -3562002 - AluSx SINE Alu 0 312 1 21 36 0 0 chr13 116182963 116182991 -3561907 + AT_rich Low_complexity Low_complexity 1 28 0 2293 113 0 0 chr13 116182997 116183290 -3561608 + AluSx SINE Alu 1 293 -19 282 147 23 155 chr13 116183295 116183340 -3561558 + MER34 LTR ERV1 431 480 -62 2328 106 0 3 chr13 116183340 116183643 -3561255 + AluSx SINE Alu 1 302 -10 282 147 23 155 chr13 116183643 116183726 -3561172 + MER34 LTR ERV1 480 542 0 1398 214 0 18 chr13 116184012 116184288 -3560610 - AluJo SINE Alu -6 306 36 1516 193 3 54 chr13 116184346 116184662 -3560236 + AluJb SINE Alu 1 300 -12 196 338 60 38 chr13 116184724 116184857 -3560041 - MIR3 SINE MIR -23 185 50 1257 193 13 0 chr13 116185948 116186187 -3558711 + L1MB3 LINE L1 5941 6182 -1 835 183 0 0 chr13 116186205 116186336 -3558562 + FLAM_C SINE Alu 3 133 0 1444 83 122 0 chr13 116186728 116186933 -3557965 - MER30 DNA MER1_type 0 230 1 846 162 0 0 chr13 116187721 116187857 -3557041 + FRAM SINE Alu 40 175 -1 2369 115 0 0 chr13 116187986 116188298 -3556600 - AluSx SINE Alu 0 312 1 297 72 0 0 chr13 116188334 116188382 -3556516 - MLT2D LTR ERVL 0 414 350 1540 182 103 3 chr13 116188422 116188762 -3556136 - MLT2D LTR ERVL -40 374 1 1755 161 11 3 chr13 116189033 116189154 -3555744 + AluJo SINE Alu 1 120 -192 257 75 25 0 chr13 116189154 116189194 -3555704 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1755 161 11 3 chr13 116189194 116189358 -3555540 + AluJo SINE Alu 120 288 -24 427 183 12 0 chr13 116189618 116189700 -3555198 - LOR1-int LTR ERV1 -6481 1639 1557 2388 86 7 3 chr13 116189752 116190053 -3554845 + AluSc SINE Alu 1 302 -7 890 122 133 28 chr13 116190142 116190323 -3554575 + MER83B-int LTR ERV1 913 1112 -674 521 113 31 21 chr13 116190323 116190420 -3554478 + MER4A LTR ERV1 1 98 -566 1186 159 26 53 chr13 116190420 116190510 -3554388 + MER4A LTR ERV1 261 352 -312 2254 102 0 7 chr13 116190510 116190814 -3554084 + AluSp SINE Alu 1 302 -11 1186 159 26 53 chr13 116190814 116191078 -3553820 + MER4A LTR ERV1 352 664 0 459 139 45 54 chr13 116191078 116191189 -3553709 + MER83B-int LTR ERV1 1109 1613 -575 378 190 13 0 chr13 116191179 116191258 -3553640 + MER83B-int LTR ERV1 1506 1585 -6535 * 1164 98 0 64 chr13 116191260 116191433 -3553465 + AluSx SINE Alu 3 164 -148 268 130 13 39 chr13 116191433 116191492 -3553406 + MER83B-int LTR ERV1 1819 1877 -6243 1991 145 16 10 chr13 116191492 116191802 -3553096 + AluSx SINE Alu 1 312 0 363 82 247 14 chr13 116191802 116191829 -3553069 + MER83B-int LTR ERV1 4193 4212 -668 9514 87 16 9 chr13 116191829 116192898 -3552000 - HSMAR1 DNA Mariner -1 1286 204 2507 84 0 0 chr13 116192898 116193207 -3551691 + AluY SINE Alu 1 309 -2 9514 87 16 9 chr13 116193207 116193413 -3551485 - HSMAR1 DNA Mariner -1083 204 1 363 82 247 14 chr13 116193413 116193458 -3551440 + MER83B-int LTR ERV1 4212 4282 -598 457 174 0 0 chr13 116193463 116193532 -3551366 + AluJ/FLAM SINE Alu 3 71 -241 335 236 11 0 chr13 116193532 116193621 -3551277 + LTR30-int LTR ERV1 3941 4030 -2646 26 30 0 0 chr13 116193648 116193681 -3551217 + AT_rich Low_complexity Low_complexity 1 33 0 10434 24 3 180 chr13 116193718 116195402 -3549496 - SVA Other Other 0 1386 12 1668 170 117 92 chr13 116195403 116195429 -3549469 + LTR30-int LTR ERV1 3315 3339 -2992 2169 123 7 10 chr13 116195429 116195730 -3549168 + AluSx SINE Alu 1 300 -12 1668 170 117 92 chr13 116195730 116196515 -3548383 + LTR30-int LTR ERV1 3339 4177 -2154 2307 81 0 7 chr13 116196578 116196874 -3548024 - AluSg SINE Alu -16 294 1 775 135 38 130 chr13 116197005 116197190 -3547708 + LTR30-int LTR ERV1 3786 3953 -4167 2434 18 47 4 chr13 116197221 116197499 -3547399 + AluY SINE Alu 1 290 -21 350 147 261 6 chr13 116197666 116197764 -3547134 + LTR30-int LTR ERV1 3950 4285 -2313 1193 176 79 18 chr13 116197803 116198081 -3546817 + LTR30-int LTR ERV1 6375 6669 -89 418 182 0 0 chr13 116198201 116198278 -3546620 + LTR30-int LTR ERV1 7021 7097 -1023 653 175 27 87 chr13 116198280 116198463 -3546435 + MER4D LTR ERV1 1 172 -700 719 258 88 22 chr13 116198535 116198853 -3546045 + LTR30-int LTR ERV1 6311 6649 -27 1989 163 0 0 chr13 116198875 116199176 -3545722 + AluJb SINE Alu 11 311 -1 914 265 26 18 chr13 116199422 116199694 -3545204 + MER41E LTR ERV1 233 506 -6 456 272 48 14 chr13 116199702 116199849 -3545049 - L2 LINE L2 -484 2830 2679 834 223 45 14 chr13 116199883 116200103 -3544795 + MLT1B LTR MaLR 1 227 -163 4039 132 109 24 chr13 116200114 116200507 -3544391 + MER4D LTR ERV1 59 417 -486 1988 158 3 0 chr13 116200507 116200811 -3544087 + AluSx SINE Alu 3 307 -5 4039 132 109 24 chr13 116200811 116201196 -3543702 + MER4D LTR ERV1 417 903 0 338 184 18 61 chr13 116201235 116201349 -3543549 - MER57A LTR ERV1 0 403 295 937 109 70 0 chr13 116201530 116201686 -3543212 - MER41B LTR ERV1 0 635 469 243 175 0 0 chr13 116201714 116201754 -3543144 + LTR30 LTR ERV1 13 52 -670 955 134 89 198 chr13 116201754 116202093 -3542805 + LTR12 LTR ERV1 53 561 -153 2522 64 0 0 chr13 116202093 116202391 -3542507 - AluY SINE Alu -13 298 1 955 134 89 198 chr13 116202391 116202530 -3542368 + LTR12 LTR ERV1 561 714 0 2814 138 20 2 chr13 116202531 116202979 -3541919 - MER41B LTR ERV1 -179 456 1 1084 181 5 25 chr13 116202984 116203188 -3541710 - AluJo SINE Alu -112 200 1 208 210 32 81 chr13 116203272 116203396 -3541502 - L2 LINE L2 -825 2489 2372 27 49 0 0 chr13 116203998 116204039 -3540859 + GC_rich Low_complexity Low_complexity 1 41 0 253 324 57 9 chr13 116204894 116204999 -3539899 - MIR SINE MIR -92 170 61 280 281 98 0 chr13 116205937 116206019 -3538879 + MIR SINE MIR 60 149 -113 708 189 47 30 chr13 116207791 116207960 -3536938 + MER20 DNA MER1_type 2 173 -46 2195 113 0 3 chr13 116207989 116208271 -3536627 - AluSx SINE Alu -21 291 11 256 258 151 0 chr13 116208309 116208402 -3536496 - LTR33A LTR ERVL -347 176 70 22 56 0 0 chr13 116208484 116208520 -3536378 + AT_rich Low_complexity Low_complexity 1 36 0 504 0 0 0 chr13 116208847 116208903 -3535995 + (TA)n Simple_repeat Simple_repeat 2 57 0 297 338 63 19 chr13 116208904 116209221 -3535677 - L1MEc LINE L1 -4756 1640 1310 429 136 0 0 chr13 116209222 116209281 -3535617 - AluS SINE Alu -258 60 2 421 283 99 78 chr13 116209289 116209762 -3535136 - L1MEc LINE L1 -5173 1032 550 205 372 109 13 chr13 116210229 116210385 -3534513 + L2 LINE L2 3099 3269 -3 2347 107 0 0 chr13 116210424 116210723 -3534175 - AluSq SINE Alu -14 299 1 24 0 0 0 chr13 116211000 116211024 -3533874 + AT_rich Low_complexity Low_complexity 1 24 0 257 331 75 60 chr13 116211123 116211389 -3533509 - L2 LINE L2 -1 3271 3002 1803 161 13 20 chr13 116211498 116211797 -3533101 - AluSx SINE Alu -15 297 1 22 35 0 0 chr13 116212067 116212096 -3532802 + AT_rich Low_complexity Low_complexity 1 29 0 306 190 75 35 chr13 116212339 116212527 -3532371 + Charlie7 DNA MER1_type 43 2581 -31 241 277 113 50 chr13 116213920 116214079 -3530819 + MIR SINE MIR 23 191 -71 426 111 28 0 chr13 116214199 116214271 -3530627 + L1PA16 LINE L1 6078 6151 -15 1631 197 14 7 chr13 116214377 116214666 -3530232 - AluJo SINE Alu -21 291 1 248 316 46 20 chr13 116215301 116215453 -3529445 + L1ME LINE L1 5537 5692 -429 476 167 0 0 chr13 116215491 116215569 -3529329 - AluSp/q SINE Alu -37 276 199 2429 90 0 0 chr13 116215813 116216112 -3528786 + AluSc SINE Alu 1 299 -10 2202 102 3 0 chr13 116216928 116217222 -3527676 + AluSx SINE Alu 3 297 -15 2234 130 0 0 chr13 116217260 116217559 -3527339 + AluSx SINE Alu 1 299 -13 2472 83 3 0 chr13 116219233 116219533 -3525365 + AluSp SINE Alu 1 301 -12 2297 78 0 10 chr13 116219979 116220274 -3524624 - AluSp SINE Alu -21 292 1 249 249 316 29 chr13 116221741 116222327 -3522571 - L2 LINE L2 -733 2581 1828 521 283 55 14 chr13 116222583 116222802 -3522096 + L1MD3 LINE L1 7709 7936 -59 221 279 13 13 chr13 116224667 116224746 -3520152 - MIR SINE MIR -65 197 119 2188 241 83 23 chr13 116224805 116225529 -3519369 - L1MB7 LINE L1 0 6184 5505 2059 128 7 0 chr13 116225529 116225840 -3519058 - AluSx SINE Alu 0 313 1 2188 241 83 23 chr13 116225840 116226617 -3518281 - L1MB7 LINE L1 -679 5505 4532 190 274 39 0 chr13 116226630 116226681 -3518217 - MIR SINE MIR -201 61 9 276 278 219 42 chr13 116226683 116226989 -3517909 - L1MC4a LINE L1 -1910 5898 5539 5592 114 101 115 chr13 116227522 116229107 -3515791 - pTR5 LTR ERV1 0 2438 743 242 260 143 0 chr13 116229393 116229470 -3515428 - MER99 DNA DNA -727 101 14 697 197 68 6 chr13 116229728 116230019 -3514879 - MSTD LTR MaLR 0 396 1 419 272 143 0 chr13 116230524 116230671 -3514227 + MIR SINE MIR 88 255 -7 289 198 81 47 chr13 116231468 116231554 -3513344 + Tigger8 DNA MER2_type 218 306 -360 299 376 6 0 chr13 116231834 116232007 -3512891 + (CA)n Simple_repeat Simple_repeat 1 174 0 190 253 133 0 chr13 116232386 116232461 -3512437 + MIR SINE MIR 61 145 -117 203 267 27 40 chr13 116232964 116233039 -3511859 - MER5B DNA MER1_type -102 76 3 2227 98 3 20 chr13 116237434 116237731 -3507167 + AluSp SINE Alu 1 292 -21 315 271 78 23 chr13 116239303 116239432 -3505466 + L1MC4a LINE L1 7162 7282 -526 230 180 20 0 chr13 116239519 116239569 -3505329 + L1MC4 LINE L1 7850 7900 -142 2096 134 20 0 chr13 116245534 116245707 -3499191 - AluSx SINE Alu 0 312 129 2094 154 0 0 chr13 116245707 116246006 -3498892 - AluSx SINE Alu -13 299 1 2096 134 20 0 chr13 116246006 116246138 -3498760 - AluSx SINE Alu -183 129 1 319 297 20 0 chr13 116248417 116248518 -3496380 + Charlie4 DNA MER1_type 38 140 -1821 489 234 18 0 chr13 116248672 116248783 -3496115 + Charlie4 DNA MER1_type 1820 1932 -29 261 57 0 0 chr13 116248805 116248840 -3496058 + (TG)n Simple_repeat Simple_repeat 1 35 0 1809 152 19 32 chr13 116250244 116250560 -3494338 + AluJo SINE Alu 1 312 0 265 332 83 39 chr13 116250693 116250922 -3493976 + L1ME LINE L1 5586 5824 -297 225 279 101 0 chr13 116250983 116251062 -3493836 + L1MB7 LINE L1 5737 5823 -1985 2159 124 23 0 chr13 116251632 116251931 -3492967 + AluSx SINE Alu 1 306 -6 1045 183 32 28 chr13 116252082 116252211 -3492687 + L1MB7 LINE L1 5932 6064 -120 2634 57 0 0 chr13 116252211 116252510 -3492388 + AluY SINE Alu 1 299 -12 1045 183 32 28 chr13 116252510 116252632 -3492266 + L1MB7 LINE L1 6064 6184 0 1200 274 118 70 chr13 116252653 116253778 -3491120 + L1MC4 LINE L1 6372 7442 -600 1784 139 63 22 chr13 116253778 116254144 -3490754 + L1MB2 LINE L1 5791 6171 0 1200 274 118 70 chr13 116254144 116254248 -3490650 + L1MC4 LINE L1 7442 7540 -502 2202 109 19 19 chr13 116254248 116254559 -3490339 + AluSx SINE Alu 1 311 -1 1200 274 118 70 chr13 116254559 116254720 -3490178 + L1MC4 LINE L1 7540 7910 -132 711 211 172 39 chr13 116254801 116255086 -3489812 + MER34C LTR ERV1 36 358 -227 14303 114 54 12 chr13 116255137 116256368 -3488530 - Tigger1 DNA MER2_type 0 2418 1240 2357 104 7 0 chr13 116256368 116256667 -3488231 - AluSg SINE Alu -9 301 1 14303 114 54 12 chr13 116256667 116257749 -3487149 - Tigger1 DNA MER2_type -1178 1240 8 1852 149 0 32 chr13 116259826 116260135 -3484763 + AluJo SINE Alu 1 299 -13 678 243 26 8 chr13 116260275 116260592 -3484306 + MLT1A1 LTR MaLR 1 359 -6 1836 150 11 4 chr13 116260777 116261057 -3483841 + AluSx SINE Alu 9 290 -22 2130 123 0 3 chr13 116263033 116263333 -3481565 + AluSq SINE Alu 1 299 -14 346 180 190 40 chr13 116263682 116263782 -3481116 + L2 LINE L2 3192 3306 -7 2185 101 20 3 chr13 116264151 116264448 -3480450 - AluSx SINE Alu -10 302 1 26 0 0 0 chr13 116265465 116265491 -3479407 + GC_rich Low_complexity Low_complexity 1 26 0 23 68 0 0 chr13 116266536 116266580 -3478318 + GC_rich Low_complexity Low_complexity 1 44 0 34 93 0 0 chr13 116266790 116266887 -3478011 + GC_rich Low_complexity Low_complexity 1 97 0 23 86 0 0 chr13 116267240 116267298 -3477600 + GC_rich Low_complexity Low_complexity 1 58 0 186 43 0 0 chr13 116267894 116267917 -3476981 + (GGGAA)n Simple_repeat Simple_repeat 5 27 0 22 0 0 0 chr13 116269994 116270016 -3474882 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 116270189 116270211 -3474687 + AT_rich Low_complexity Low_complexity 1 22 0 2258 91 10 3 chr13 116270480 116270777 -3474121 + AluSp SINE Alu 1 299 -14 1000 177 11 0 chr13 116271190 116271365 -3473533 + AluJb SINE Alu 120 296 -16 313 218 10 69 chr13 116271628 116271729 -3473169 + L1MCa LINE L1 1970 2064 -4362 315 0 0 0 chr13 116271955 116271990 -3472908 + (TTGTG)n Simple_repeat Simple_repeat 1 35 0 950 206 46 0 chr13 116273952 116274146 -3470752 + MER58B DNA MER1_type 139 341 0 2195 91 47 3 chr13 116274200 116274497 -3470401 - AluSp SINE Alu -3 310 1 2373 87 7 0 chr13 116274501 116274801 -3470097 - AluSc SINE Alu -1 308 7 2074 137 7 7 chr13 116277155 116277462 -3467436 - AluSg SINE Alu -3 307 1 2454 100 0 0 chr13 116277519 116277830 -3467068 - AluSq SINE Alu -2 311 1 192 77 0 0 chr13 116277840 116277866 -3467032 + (T)n Simple_repeat Simple_repeat 1 26 0 2422 92 3 16 chr13 116277904 116278221 -3466677 - AluSp SINE Alu 0 313 1 2354 86 33 0 chr13 116278915 116279218 -3465680 - AluSp SINE Alu 0 313 1 187 333 80 0 chr13 116279319 116279394 -3465504 + MIR SINE MIR 86 166 -96 367 308 0 10 chr13 116279756 116279860 -3465038 - MIR3 SINE MIR -43 165 63 218 159 0 63 chr13 116280196 116280259 -3464639 + (TAATG)n Simple_repeat Simple_repeat 2 60 0 62 14 0 0 chr13 116280296 116280365 -3464533 + AT_rich Low_complexity Low_complexity 1 69 0 2071 123 0 3 chr13 116280793 116281077 -3463821 + AluSg SINE Alu 1 283 -27 715 223 173 21 chr13 116283265 116283548 -3461350 + MER67C LTR ERV1 3 328 -382 1587 163 109 6 chr13 116283569 116283900 -3460998 + MLT1A1 LTR MaLR 1 365 0 814 143 137 6 chr13 116283900 116284075 -3460823 + MER67C LTR ERV1 513 710 0 2308 81 7 52 chr13 116284178 116284487 -3460411 + AluSx SINE Alu 2 296 -16 207 100 0 0 chr13 116285168 116285198 -3459700 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2539 48 3 0 chr13 116285721 116286014 -3458884 + AluY SINE Alu 1 294 -17 21 57 0 0 chr13 116286955 116286990 -3457908 + AT_rich Low_complexity Low_complexity 1 35 0 42185 58 7 3 chr13 116287057 116293039 -3451859 + L1PA5 LINE L1 11 6015 -139 28525 47 5 2 chr13 116293139 116297475 -3447423 + L1PA5 LINE L1 1804 6152 -2 2194 75 7 0 chr13 116297631 116297924 -3446974 + AluSp SINE Alu 1 295 -18 296 227 0 100 chr13 116300889 116300999 -3443899 + L1MC5 LINE L1 6636 6734 -1227 2311 99 0 0 chr13 116301005 116301318 -3443580 + AluSq SINE Alu 1 313 0 453 145 0 0 chr13 116301318 116301394 -3443504 + (GA)n Simple_repeat Simple_repeat 1 76 0 329 651 0 7 chr13 116301408 116301560 -3443338 + polypurine Low_complexity Low_complexity 2 152 0 1070 272 74 60 chr13 116301623 116301972 -3442926 + L1MC5 LINE L1 6787 7130 -831 1900 111 0 44 chr13 116301972 116302293 -3442605 + AluSx SINE Alu 1 308 0 1070 272 74 60 chr13 116302293 116302656 -3442242 + L1MC5 LINE L1 7130 7510 -451 818 144 0 36 chr13 116302940 116303079 -3441819 - AluJo SINE Alu -178 134 1 23 86 0 0 chr13 116303269 116303327 -3441571 + AT_rich Low_complexity Low_complexity 1 58 0 3118 190 56 3 chr13 116303331 116304093 -3440805 + L1MC1 LINE L1 5497 6333 0 783 208 27 0 chr13 116305148 116305297 -3439601 - FRAM SINE Alu -24 152 1 904 136 0 0 chr13 116305610 116305750 -3439148 + FLAM_C SINE Alu 1 140 -3 22 70 0 0 chr13 116306612 116306655 -3438243 + AT_rich Low_complexity Low_complexity 1 43 0 960 67 0 0 chr13 116306868 116306988 -3437910 + AluSg/x SINE Alu 174 293 -17 267 133 0 0 chr13 116307649 116307694 -3437204 + (A)n Simple_repeat Simple_repeat 1 45 0 1916 132 0 16 chr13 116307907 116308211 -3436687 - AluJo SINE Alu -13 299 1 1670 173 7 3 chr13 116308222 116308522 -3436376 - AluSx SINE Alu -11 301 1 564 96 0 0 chr13 116308560 116308633 -3436265 - AluSc SINE Alu -32 277 205 2168 100 0 34 chr13 116309052 116309373 -3435525 + AluSg SINE Alu 1 310 0 695 256 0 6 chr13 116309967 116310131 -3434767 + FRAM SINE Alu 1 163 -3 1819 161 0 3 chr13 116310291 116310602 -3434296 + AluSx SINE Alu 1 310 -2 2030 130 0 0 chr13 116311611 116311918 -3432980 + AluY SINE Alu 1 307 -4 309 336 120 30 chr13 116312305 116312676 -3432222 - L1MC/D LINE L1 -2119 5689 5278 2123 125 0 0 chr13 116312676 116312980 -3431918 - AluSp SINE Alu -9 304 1 309 336 120 30 chr13 116312980 116313007 -3431891 - L1MC/D LINE L1 -2530 5278 5255 22 0 0 0 chr13 116313652 116313674 -3431224 + AT_rich Low_complexity Low_complexity 1 22 0 375 311 0 0 chr13 116313674 116313764 -3431134 + L1MC4 LINE L1 6614 6703 -1339 * 403 220 0 92 chr13 116313704 116313813 -3431085 - L1MC4 LINE L1 -1339 6703 6605 2282 91 0 3 chr13 116313852 116314160 -3430738 + AluSp SINE Alu 1 307 -6 1217 171 5 9 chr13 116314274 116314485 -3430413 + AluJb SINE Alu 79 288 -24 2299 95 0 0 chr13 116314495 116314801 -3430097 + AluSg SINE Alu 1 306 -4 953 180 0 6 chr13 116314949 116315121 -3429777 + AluSg/x SINE Alu 130 300 -10 29 0 0 0 chr13 116315252 116315281 -3429617 + AT_rich Low_complexity Low_complexity 1 29 0 374 240 0 0 chr13 116315390 116315465 -3429433 - MER2 DNA MER2_type 0 345 271 1725 179 7 0 chr13 116315466 116315768 -3429130 + AluJb SINE Alu 2 305 -7 996 124 51 11 chr13 116315781 116315958 -3428940 - MER2 DNA MER2_type -134 211 28 478 200 19 0 chr13 116315981 116316086 -3428812 + L1MB3 LINE L1 5766 5872 -311 449 125 0 0 chr13 116316093 116316165 -3428733 + L1MB4 LINE L1 6086 6157 -23 6058 41 12 5 chr13 116316240 116316975 -3427923 - L1PA7 LINE L1 0 6154 5415 226 292 123 51 chr13 116317876 116317915 -3426983 + L1MC/D LINE L1 5611 5646 -2162 1711 138 39 3 chr13 116317915 116318197 -3426701 - AluSx SINE Alu -20 292 1 226 292 123 51 chr13 116318197 116318352 -3426546 + L1MC/D LINE L1 5646 5819 -1989 2301 81 0 0 chr13 116318702 116318998 -3425900 + AluSq SINE Alu 1 296 -17 1360 186 101 50 chr13 116319033 116319186 -3425712 + MSTD LTR MaLR 1 145 -251 1794 145 3 29 chr13 116319186 116319496 -3425402 + AluJo SINE Alu 1 302 -10 1360 186 101 50 chr13 116319496 116319719 -3425179 + MSTD LTR MaLR 145 396 0 312 264 190 18 chr13 116320602 116320765 -3424133 + L1MC4 LINE L1 7415 7631 -203 294 222 6 26 chr13 116320988 116321064 -3423834 + L1MC4 LINE L1 7685 8035 -7 1981 123 17 3 chr13 116321527 116321828 -3423070 - AluSq SINE Alu -8 305 1 250 273 202 0 chr13 116322293 116322392 -3422506 + MIR SINE MIR 118 236 -26 29 28 0 0 chr13 116322950 116322986 -3421912 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 116323148 116323169 -3421729 + GC_rich Low_complexity Low_complexity 1 21 0 2164 102 0 0 chr13 116324344 116324639 -3420259 + AluSx SINE Alu 1 295 -17 1041 145 17 0 chr13 116325549 116325721 -3419177 - AluSg/x SINE Alu -13 299 125 2107 116 0 25 chr13 116325721 116326041 -3418857 - AluSx SINE Alu 0 312 1 1979 99 9 52 chr13 116326048 116326372 -3418526 - AluSp SINE Alu -2 311 2 1622 70 0 70 chr13 116326536 116326777 -3418121 + MLT2A1 LTR ERVL 221 444 0 274 59 0 0 chr13 116327078 116327112 -3417786 + Alu SINE Alu 1 34 -267 651 103 0 0 chr13 116327213 116327310 -3417588 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 404 235 58 60 chr13 116327612 116327840 -3417058 + L1MCc LINE L1 25 596 -5826 1169 275 59 33 chr13 116328299 116328584 -3416314 + L1MCc LINE L1 819 1124 -5299 4768 227 98 63 chr13 116328584 116330278 -3414620 - MER52A LTR ERV1 -1 1754 1 1169 275 59 33 chr13 116330278 116330504 -3414394 + L1MCc LINE L1 1124 1343 -5080 2134 98 3 46 chr13 116330957 116331283 -3413615 - AluSx SINE Alu 0 312 1 1189 171 0 22 chr13 116332039 116332261 -3412637 - AluJb SINE Alu -14 298 82 563 294 63 24 chr13 116332455 116332817 -3412081 + MLT1K LTR MaLR 142 552 -36 1969 113 48 0 chr13 116332914 116333240 -3411658 - AluSx SINE Alu 0 340 1 838 290 128 18 chr13 116333279 116333751 -3411147 + MLT1G1 LTR MaLR 4 595 0 553 357 41 35 chr13 116333771 116334090 -3410808 - L1MC4a LINE L1 -1863 5945 5625 672 126 0 10 chr13 116334116 116334219 -3410679 + LTR47A LTR ERVL 1 102 -350 274 203 65 14 chr13 116334318 116334408 -3410490 + (TA)n Simple_repeat Simple_repeat 1 102 -43 1949 123 3 23 chr13 116334408 116334716 -3410182 - AluSx SINE Alu -10 302 1 274 203 65 14 chr13 116334716 116334763 -3410135 + (TA)n Simple_repeat Simple_repeat 102 145 0 518 255 70 60 chr13 116335148 116335332 -3409566 + MIR SINE MIR 5 193 -69 1767 124 90 34 chr13 116335332 116335687 -3409211 - THE1C LTR MaLR 0 375 1 518 255 70 60 chr13 116335687 116335702 -3409196 + MIR SINE MIR 193 206 -56 2193 127 141 5 chr13 116335973 116336350 -3408548 - MSTA LTR MaLR 0 428 1 357 294 103 61 chr13 116336364 116337003 -3407895 - L1M4 LINE L1 -1567 4579 3914 916 187 0 0 chr13 116337053 116337208 -3407690 - FRAM SINE Alu -13 163 9 1974 125 0 0 chr13 116337380 116337652 -3407246 - AluSx SINE Alu -24 288 17 441 0 0 0 chr13 116337718 116337767 -3407131 + (TG)n Simple_repeat Simple_repeat 1 49 0 2205 119 0 0 chr13 116337980 116338282 -3406616 - AluSx SINE Alu -10 302 1 344 262 149 38 chr13 116338333 116338567 -3406331 - L1M4 LINE L1 -2727 3419 3212 2139 138 3 0 chr13 116338567 116338872 -3406026 - AluSx SINE Alu -6 306 1 344 262 149 38 chr13 116338872 116339141 -3405757 - L1M4 LINE L1 -2934 3212 2860 2358 94 7 0 chr13 116339238 116339535 -3405363 - AluSc SINE Alu -10 299 1 375 188 28 44 chr13 116339729 116339910 -3404988 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 1680 165 179 8 chr13 116339913 116340276 -3404622 + MSTA LTR MaLR 2 426 -2 9911 131 19 34 chr13 116340283 116341881 -3403017 + MSTA-int LTR MaLR 7 1580 0 2093 142 119 16 chr13 116341881 116342269 -3402629 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr13 116342324 116342346 -3402552 + (TG)n Simple_repeat Simple_repeat 1 22 0 2248 193 31 7 chr13 116342476 116342926 -3401972 - MER65C LTR ERV1 0 461 1 463 331 25 25 chr13 116343119 116343400 -3401498 - MER65C-int LTR ERV1 -211 4660 4380 1697 244 64 23 chr13 116343496 116343546 -3401352 - MER65C-int LTR ERV1 -698 4173 4127 1884 157 3 20 chr13 116343546 116343845 -3401053 - AluSx SINE Alu -17 295 2 1697 244 64 23 chr13 116343845 116344233 -3400665 - MER65C-int LTR ERV1 -744 4127 3717 294 269 43 11 chr13 116344213 116344306 -3400592 - MER83B-int LTR ERV1 -680 5651 5556 * 259 163 143 0 chr13 116344318 116344367 -3400531 - MER83B-int LTR ERV1 -939 5392 5337 1611 206 3 7 chr13 116344484 116344790 -3400108 - AluJo SINE Alu -7 305 1 2541 208 106 75 chr13 116344791 116345003 -3399895 - MER83B-int LTR ERV1 -1229 5102 4898 2474 92 53 11 chr13 116345003 116345363 -3399535 - THE1C LTR MaLR 0 375 1 10551 115 32 7 chr13 116345363 116346903 -3397995 - THE1C-int LTR MaLR 0 1580 1 2741 92 16 5 chr13 116346905 116347274 -3397624 - THE1C LTR MaLR -2 373 1 2541 208 106 75 chr13 116347274 116347583 -3397315 - MER83B-int LTR ERV1 -1433 4898 4600 2187 141 0 0 chr13 116347583 116347888 -3397010 - AluSx SINE Alu -7 305 1 2541 208 106 75 chr13 116347888 116348310 -3396588 - MER83B-int LTR ERV1 -1731 4600 4193 1835 195 0 0 chr13 116348310 116348612 -3396286 + AluJo SINE Alu 1 302 -10 2541 208 106 75 chr13 116348612 116348986 -3395912 - MER83B-int LTR ERV1 -2138 4193 2483 841 183 43 43 chr13 116349066 116349301 -3395597 - MER83B-int LTR ERV1 -2868 3730 3496 469 312 49 70 chr13 116349471 116349840 -3395058 - MER83B-int LTR ERV1 -1697 3183 2075 27 62 0 0 chr13 116349850 116349898 -3395000 + AT_rich Low_complexity Low_complexity 1 48 0 24 96 0 0 chr13 116349985 116350058 -3394840 + AT_rich Low_complexity Low_complexity 1 73 0 2310 162 40 16 chr13 116350516 116350961 -3393937 - MER65C LTR ERV1 -5 456 1 222 37 0 0 chr13 116351290 116351317 -3393581 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1733 154 32 25 chr13 116351473 116351753 -3393145 - AluJo SINE Alu -30 282 1 2073 135 13 0 chr13 116351756 116352059 -3392839 - AluSx SINE Alu -4 308 2 261 118 0 59 chr13 116352538 116352606 -3392292 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 1312 153 0 0 chr13 116352879 116353075 -3391823 + AluJo SINE Alu 1 196 -116 448 349 28 14 chr13 116353136 116353348 -3391550 - LTR33 LTR ERVL -304 217 3 1265 94 0 0 chr13 116353524 116353683 -3391215 - AluSg/x SINE Alu -16 296 138 364 297 64 50 chr13 116353685 116353887 -3391011 - L1MEc LINE L1 -4029 2367 2163 278 318 127 21 chr13 116353890 116354079 -3390819 - LTR33A LTR ERVL 0 523 315 2069 129 7 0 chr13 116354113 116354400 -3390498 - AluSx SINE Alu -13 299 11 282 258 151 0 chr13 116354438 116354531 -3390367 - LTR33A LTR ERVL -347 176 70 22 56 0 0 chr13 116354613 116354649 -3390249 + AT_rich Low_complexity Low_complexity 1 36 0 504 0 0 0 chr13 116354976 116355032 -3389866 + (TA)n Simple_repeat Simple_repeat 2 57 0 361 311 66 22 chr13 116355032 116355350 -3389548 - L1MEc LINE L1 -4755 1641 1310 411 136 0 0 chr13 116355351 116355410 -3389488 - AluS SINE Alu -258 60 2 551 288 89 68 chr13 116355418 116355891 -3389007 - L1MEc LINE L1 -5173 1032 550 2326 107 0 0 chr13 116356553 116356852 -3388046 - AluSq SINE Alu -14 299 1 24 0 0 0 chr13 116357129 116357153 -3387745 + AT_rich Low_complexity Low_complexity 1 24 0 201 311 123 0 chr13 116357252 116357358 -3387540 - L2 LINE L2 -1 3271 3153 1774 164 14 3 chr13 116357640 116357926 -3386972 - AluSx SINE Alu -23 289 1 22 35 0 0 chr13 116358196 116358225 -3386673 + AT_rich Low_complexity Low_complexity 1 29 0 328 190 75 35 chr13 116358468 116358656 -3386242 + Charlie7 DNA MER1_type 43 2581 -31 429 111 28 0 chr13 116360327 116360399 -3384499 + L1PA16 LINE L1 6078 6151 -15 1596 197 14 7 chr13 116360505 116360794 -3384104 - AluJo SINE Alu -21 291 1 273 316 46 20 chr13 116361429 116361581 -3383317 + L1ME LINE L1 5537 5692 -429 2045 120 0 0 chr13 116361619 116361895 -3383003 - AluSq SINE Alu -37 276 1 253 265 109 63 chr13 116362049 116362287 -3382611 - MER110-int LTR ERV1 -1460 5341 5093 681 245 38 0 chr13 116362397 116362556 -3382342 + MLT1D LTR MaLR 39 203 -302 512 256 81 0 chr13 116362593 116362765 -3382133 + MLT1D LTR MaLR 320 505 0 668 193 169 38 chr13 116363500 116363599 -3381299 - MER110-int LTR ERV1 -3953 983 898 2094 149 59 47 chr13 116363599 116363947 -3380951 + MSTA LTR MaLR 1 356 -72 2287 119 0 6 chr13 116363947 116364259 -3380639 - AluSx SINE Alu 0 312 3 2094 149 59 47 chr13 116364259 116364333 -3380565 + MSTA LTR MaLR 356 428 0 668 193 169 38 chr13 116364333 116364446 -3380452 - MER110-int LTR ERV1 -4038 898 743 31 68 0 0 chr13 116364711 116364770 -3380128 + AT_rich Low_complexity Low_complexity 1 59 0 2757 169 26 2 chr13 116365557 116366049 -3378849 - L1MB3 LINE L1 -32 6151 5648 267 310 86 17 chr13 116366408 116366582 -3378316 - MER110-int LTR ERV1 -3321 3480 3295 2838 132 9 5 chr13 116366801 116367227 -3377671 + MSTA LTR MaLR 1 428 0 2272 178 31 7 chr13 116367610 116368026 -3376872 + MSTB LTR MaLR 1 426 0 288 329 89 7 chr13 116368029 116368175 -3376723 - MER110-int LTR ERV1 -4085 562 405 918 236 62 0 chr13 116369910 116370180 -3374718 + L1M4 LINE L1 3468 3752 -2394 210 224 0 30 chr13 116370541 116370608 -3374290 + T-rich Low_complexity Low_complexity 2 66 0 4499 169 29 6 chr13 116370608 116371425 -3373473 + L1MC1 LINE L1 5497 6332 -1 1463 265 53 30 chr13 116371497 116372006 -3372892 - L1ME1 LINE L1 -5 6161 5641 1530 96 14 0 chr13 116372093 116372312 -3372586 - L1PB1 LINE L1 -2 6149 5928 537 208 132 35 chr13 116372315 116372459 -3372439 - FRAM SINE Alu -18 158 1 1878 159 7 0 chr13 116373426 116373722 -3371176 - AluJb SINE Alu -14 298 1 1444 262 20 10 chr13 116374143 116374536 -3370362 - MER119 DNA MER1_type 0 583 187 1635 249 42 15 chr13 116375881 116376335 -3368563 - L1MD3 LINE L1 -2 7993 7528 816 296 72 13 chr13 116376333 116376517 -3368381 - L1MB3 LINE L1 -490 5680 5508 * 1489 211 24 61 chr13 116376517 116376740 -3368158 - MLT1A1 LTR MaLR 0 365 160 2033 152 0 0 chr13 116376740 116377036 -3367862 - AluSx SINE Alu -16 296 1 1489 211 24 61 chr13 116377036 116377191 -3367707 - MLT1A1 LTR MaLR -205 160 1 816 296 72 13 chr13 116377191 116377698 -3367200 - L1MB3 LINE L1 -662 5508 4943 256 179 45 0 chr13 116377703 116377770 -3367128 + CT-rich Low_complexity Low_complexity 1 70 0 1807 207 14 0 chr13 116377921 116378278 -3366620 + MLT1A1 LTR MaLR 3 364 -1 3040 224 62 28 chr13 116378421 116379308 -3365590 - L1MC4 LINE L1 0 8042 7126 1654 211 10 53 chr13 116379308 116379706 -3365192 + MLT1B LTR MaLR 1 381 -9 509 274 128 0 chr13 116379784 116379988 -3364910 - L1MC4 LINE L1 -1039 7003 6774 1574 293 42 29 chr13 116380002 116380795 -3364103 - L1MB3 LINE L1 -1499 4647 3845 983 169 17 45 chr13 116380797 116380975 -3363923 - AluJo SINE Alu -18 294 122 2082 142 0 0 chr13 116381000 116381289 -3363609 - AluSq SINE Alu -24 289 1 841 163 0 0 chr13 116381313 116381436 -3363462 - AluJo SINE Alu -189 123 1 338 311 0 0 chr13 116381437 116381543 -3363355 - L1MB3 LINE L1 -2301 3845 3740 1998 150 19 33 chr13 116381550 116381911 -3362987 - MLT1A1 LTR MaLR 0 365 10 3450 114 12 2 chr13 116382039 116382547 -3362351 - MER75 DNA T2_type 0 514 2 450 272 43 64 chr13 116382563 116382909 -3361989 - L1MB3 LINE L1 -2722 3424 3086 2011 146 26 53 chr13 116383153 116383475 -3361423 - THE1C LTR MaLR -7 368 56 2179 122 0 3 chr13 116383475 116383770 -3361128 - AluSq SINE Alu -19 294 1 2011 146 26 53 chr13 116383770 116383825 -3361073 - THE1C LTR MaLR -319 56 1 10294 125 6 41 chr13 116383825 116385105 -3359793 - THE1B-int LTR MaLR 0 1580 368 2333 107 54 25 chr13 116385105 116385459 -3359439 - THE1B LTR MaLR 0 364 1 10294 125 6 41 chr13 116385459 116385813 -3359085 - THE1B-int LTR MaLR -1212 368 3 1689 149 99 42 chr13 116385815 116386170 -3358728 - THE1C LTR MaLR 0 375 1 496 148 44 82 chr13 116386345 116386480 -3358418 - L1MC1 LINE L1 -1 6332 6203 518 299 98 16 chr13 116387125 116387379 -3357519 + L1MC4a LINE L1 5575 5849 -1959 2714 196 42 23 chr13 116387386 116387607 -3357291 + L1MB7 LINE L1 5513 5728 -456 1883 144 82 25 chr13 116387607 116387962 -3356936 - THE1C LTR MaLR 0 375 1 2714 196 42 23 chr13 116387962 116388381 -3356517 + L1MB7 LINE L1 5728 6177 -7 767 183 41 24 chr13 116389283 116389452 -3355446 + MER20 DNA MER1_type 2 173 -46 2033 130 0 7 chr13 116389481 116389774 -3355124 - AluSx SINE Alu -21 291 1 805 189 0 0 chr13 116389960 116390103 -3354795 + FRAM SINE Alu 1 137 -39 2041 120 10 3 chr13 116390166 116390475 -3354423 + AluSx SINE Alu 1 311 -1 2452 50 3 0 chr13 116390502 116390805 -3354093 + AluY SINE Alu 1 304 -7 4175 135 16 124 chr13 116391124 116392045 -3352853 - LTR12 LTR ERV1 0 826 5 2836 184 14 28 chr13 116392060 116392679 -3352219 - pTR5 LTR ERV1 -1093 1345 735 443 217 26 0 chr13 116394462 116394577 -3350321 - HsTC2 DNA Tc2 -115 1783 1666 354 262 52 62 chr13 116394857 116395067 -3349831 + L1ME4a LINE L1 5898 6105 -16 787 317 39 53 chr13 116395116 116395912 -3348986 + L1ME3 LINE L1 4575 5359 -787 681 311 107 31 chr13 116395915 116396394 -3348504 + L1ME3 LINE L1 5434 5948 -214 329 243 10 48 chr13 116397426 116397529 -3347369 - MIR SINE MIR -115 147 49 210 167 0 0 chr13 116398229 116398265 -3346633 + A-rich Low_complexity Low_complexity 1 36 0 1381 207 118 30 chr13 116398600 116398963 -3345935 - MLT2D LTR ERVL -19 395 1 350 185 31 0 chr13 116399020 116399085 -3345813 + L2 LINE L2 3196 3262 -51 224 0 65 0 chr13 116399090 116399121 -3345777 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 857 250 146 49 chr13 116399211 116399696 -3345202 + MLT1E LTR MaLR 8 587 -39 221 274 145 26 chr13 116399764 116399881 -3345017 + MIR3 SINE MIR 11 141 -67 432 297 30 55 chr13 116401511 116401713 -3343185 + MIR SINE MIR 22 218 -44 196 210 161 49 chr13 116402768 116402849 -3342049 + L2 LINE L2 3183 3272 0 24 53 0 0 chr13 116402856 116402894 -3342004 + AT_rich Low_complexity Low_complexity 1 38 0 244 205 51 13 chr13 116403002 116403080 -3341818 + (TA)n Simple_repeat Simple_repeat 2 82 0 1050 266 52 62 chr13 116403146 116403660 -3341238 - L1MC4a LINE L1 -1913 5895 5387 477 309 38 76 chr13 116403699 116404120 -3340778 - L1MC4a LINE L1 -824 5322 4918 22 56 0 0 chr13 116404305 116404341 -3340557 + AT_rich Low_complexity Low_complexity 1 36 0 236 197 56 0 chr13 116404629 116404700 -3340198 - L1P LINE L1 -1612 4534 4460 382 322 154 0 chr13 116406353 116406502 -3338396 - MIR SINE MIR -44 218 47 359 272 63 97 chr13 116406776 116407044 -3337854 - MER20B DNA MER1_type -522 261 3 1735 166 0 22 chr13 116407086 116407399 -3337499 + AluJb SINE Alu 1 306 -6 361 248 15 83 chr13 116407422 116407555 -3337343 + MIR SINE MIR 70 193 -69 233 239 0 0 chr13 116407954 116408000 -3336898 + MIR SINE MIR 104 149 -113 352 291 39 84 chr13 116408382 116408561 -3336337 + MIR SINE MIR 36 206 -56 2029 202 69 26 chr13 116408611 116409191 -3335707 - Charlie7 DNA MER1_type 0 2612 2008 1349 128 19 198 chr13 116409191 116409616 -3335282 + MER7A DNA MER2_type 1 336 0 1683 236 124 45 chr13 116409619 116410455 -3334443 - Charlie7 DNA MER1_type -605 2007 1106 327 25 0 0 chr13 116410456 116410496 -3334402 + (TA)n Simple_repeat Simple_repeat 2 41 0 2365 223 49 18 chr13 116410499 116411134 -3333764 + L1MC4a LINE L1 6251 6333 0 1892 303 105 7 chr13 116411135 116412094 -3332804 - Charlie7 DNA MER1_type -1505 1107 55 751 236 14 48 chr13 116412096 116412304 -3332594 - MER3 DNA MER1_type 0 209 9 2220 103 0 13 chr13 116413111 116413422 -3331476 + AluSg SINE Alu 1 307 -3 302 274 156 37 chr13 116414144 116414279 -3330619 - L1ME3 LINE L1 -23 6139 5989 512 261 23 51 chr13 116415451 116415627 -3329271 + MIR SINE MIR 17 187 -75 1093 258 27 0 chr13 116416179 116416477 -3328421 + L1ME LINE L1 5468 5773 -397 306 229 14 0 chr13 116416516 116416586 -3328312 - MIR SINE MIR -173 89 19 351 207 196 74 chr13 116416633 116416825 -3328073 + L1M4 LINE L1 1001 3193 -1206 25 0 0 0 chr13 116417057 116417082 -3327816 + AT_rich Low_complexity Low_complexity 1 25 0 1236 175 20 89 chr13 116417363 116417666 -3327232 + AluJo SINE Alu 1 282 -30 1164 81 0 0 chr13 116417671 116417832 -3327066 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 404 235 58 60 chr13 116418134 116418362 -3326536 + L1MCc LINE L1 25 596 -5826 420 284 70 56 chr13 116418821 116419106 -3325792 + L1MCc LINE L1 819 1107 -5316 6542 201 45 63 chr13 116419106 116420802 -3324096 - MER52A LTR ERV1 0 1755 1 1341 247 27 25 chr13 116420806 116421193 -3323705 + L1MCc LINE L1 1119 1509 -4914 1324 222 22 90 chr13 116421193 116421594 -3323304 + MLT1A2 LTR MaLR 1 374 0 1341 247 27 25 chr13 116421594 116421611 -3323287 + L1MCc LINE L1 1509 1524 -4899 429 286 127 24 chr13 116421606 116421819 -3323079 + L1MCc LINE L1 2498 2732 -4390 * 1410 265 81 23 chr13 116421817 116422523 -3322375 + L1MCc LINE L1 1527 2473 -4649 1513 239 34 48 chr13 116422523 116422712 -3322186 + MLT1E2 LTR MaLR 1 191 -435 1754 158 6 19 chr13 116422712 116423023 -3321875 + AluJb SINE Alu 1 307 -5 1513 239 34 48 chr13 116423023 116423273 -3321625 + MLT1E2 LTR MaLR 191 434 -192 908 269 62 32 chr13 116423288 116423660 -3321238 + L1MCc LINE L1 2708 3090 -4032 22 0 0 0 chr13 116423980 116424002 -3320896 + AT_rich Low_complexity Low_complexity 1 22 0 479 226 122 39 chr13 116424020 116424299 -3320599 - L1MC5 LINE L1 -209 7752 7451 1248 203 45 72 chr13 116424395 116424795 -3320103 + MLT1C LTR MaLR 27 415 -52 302 271 175 12 chr13 116424844 116425010 -3319888 - L1MC5 LINE L1 -1899 5909 5717 2253 73 0 3 chr13 116425050 116425351 -3319547 - AluY SINE Alu -8 303 4 516 194 103 46 chr13 116425372 116425547 -3319351 + L1MC5 LINE L1 7289 7473 -488 843 261 53 29 chr13 116425549 116425925 -3318973 + L1MC5 LINE L1 7516 7900 -61 335 250 68 62 chr13 116425955 116426147 -3318751 - L1MC5 LINE L1 -409 5712 5520 3277 181 46 25 chr13 116426215 116426382 -3318516 + MER67C LTR ERV1 1 163 -547 2382 161 57 0 chr13 116426382 116426785 -3318113 - MSTB LTR MaLR 0 426 1 3277 181 46 25 chr13 116426785 116427309 -3317589 + MER67C LTR ERV1 163 707 -3 1773 201 26 16 chr13 116427647 116428070 -3316828 - L1MB7 LINE L1 -7 6177 5751 490 90 146 11 chr13 116428070 116428159 -3316739 + MSTA LTR MaLR 5 105 -323 236 231 55 88 chr13 116428247 116428429 -3316469 - L1MC5 LINE L1 -85 7876 7701 1303 109 5 5 chr13 116432366 116432550 -3312348 - AluSg/x SINE Alu -46 266 83 281 235 34 59 chr13 116432702 116432744 -3312154 - MLT1J2 LTR MaLR -22 422 380 3676 94 14 6 chr13 116432744 116433253 -3311645 + MER75 DNA T2_type 2 514 0 281 235 34 59 chr13 116433253 116433297 -3311601 - MLT1J2 LTR MaLR -64 380 305 412 220 51 17 chr13 116433379 116433497 -3311401 - MLT1J2 LTR MaLR -255 195 74 1951 156 101 25 chr13 116435794 116436150 -3308748 + MSTA LTR MaLR 1 392 -36 2219 100 0 6 chr13 116436150 116436461 -3308437 - AluSc SINE Alu 0 309 1 1951 156 101 25 chr13 116436461 116436502 -3308396 + MSTA LTR MaLR 392 428 0 2339 153 73 2 chr13 116437052 116437450 -3307448 - MSTB LTR MaLR 0 426 1 486 293 122 9 chr13 116437615 116437837 -3307061 + MIR SINE MIR 13 259 -3 452 275 49 14 chr13 116437809 116437951 -3306947 - MIR SINE MIR -82 180 34 * 1027 228 99 53 chr13 116438333 116438408 -3306490 + MLT1C LTR MaLR 10 80 -387 2024 112 10 10 chr13 116438408 116438711 -3306187 + AluSx SINE Alu 1 303 -9 1027 228 99 53 chr13 116438711 116439048 -3305850 + MLT1C LTR MaLR 80 441 -26 1058 242 109 23 chr13 116440986 116441416 -3303482 + MLT1C LTR MaLR 1 467 0 293 108 40 14 chr13 116442324 116442398 -3302500 + (TG)n Simple_repeat Simple_repeat 1 76 0 447 285 42 6 chr13 116442871 116443036 -3301862 + MER5B DNA MER1_type 5 175 -3 423 294 171 0 chr13 116443056 116443202 -3301696 + MER5A DNA MER1_type 13 183 -6 225 235 191 0 chr13 116443418 116443486 -3301412 + Charlie2 DNA MER1_type 68 148 -2714 1588 157 49 46 chr13 116443641 116443991 -3300907 - MER4A LTR ERV1 -313 351 1 505 163 12 0 chr13 116444020 116444124 -3300774 + AluSg/x SINE Alu 199 303 0 350 232 81 0 chr13 116445528 116445627 -3299271 + L1MC3 LINE L1 7658 7764 -21 734 201 104 0 chr13 116445641 116445805 -3299093 + MER6B DNA MER2_type 1 181 -29 463 217 17 83 chr13 116446115 116446153 -3298745 + MER81 DNA DNA 2 41 -73 1928 136 7 7 chr13 116446153 116446462 -3298436 - AluSq SINE Alu -4 309 1 463 217 17 83 chr13 116446462 116446543 -3298355 + MER81 DNA DNA 41 113 -1 674 219 30 41 chr13 116448090 116448259 -3296639 + MIR SINE MIR 33 199 -63 2195 128 32 32 chr13 116448283 116448658 -3296240 + THE1C LTR MaLR 1 375 0 7427 166 136 11 chr13 116448660 116450126 -3294772 + THE1C-int LTR MaLR 3 1651 0 2090 137 41 14 chr13 116450126 116450491 -3294407 + THE1C LTR MaLR 1 375 0 251 286 2 0 chr13 116451231 116451311 -3293587 + L1MC4a LINE L1 6545 6609 -1199 2515 101 3 0 chr13 116451595 116451950 -3292948 - L1PA14 LINE L1 -1 6160 5805 248 328 94 17 chr13 116451975 116452210 -3292688 + L1MC4 LINE L1 7683 7935 -107 2513 180 73 66 chr13 116452432 116453175 -3291723 + L1M2 LINE L1 4594 5328 -886 189 0 0 0 chr13 116453175 116453196 -3291702 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2513 180 73 66 chr13 116453196 116453385 -3291513 + L1M2 LINE L1 5328 5514 -700 1707 262 91 107 chr13 116453385 116454441 -3290457 + L1ME3A LINE L1 2784 3807 -2339 2256 178 19 5 chr13 116454441 116454863 -3290035 - MSTA LTR MaLR 0 428 1 1707 262 91 107 chr13 116454863 116455361 -3289537 + L1ME3A LINE L1 3807 4312 -1834 967 163 0 0 chr13 116455361 116455514 -3289384 - AluJb SINE Alu -20 292 140 734 220 115 38 chr13 116456119 116456432 -3288466 + L1MC5 LINE L1 7406 7742 -219 1944 257 34 48 chr13 116456450 116457296 -3287602 + L1ME3A LINE L1 5127 5961 -209 274 297 136 19 chr13 116457312 116457467 -3287431 - L3 LINE CR1 -364 1213 1041 2206 121 49 29 chr13 116457488 116457834 -3287064 - THE1B LTR MaLR -11 353 1 1657 229 92 50 chr13 116457840 116458341 -3286557 + MLT1F1 LTR MaLR 46 567 0 210 343 39 10 chr13 116458493 116458595 -3286303 - L3 LINE CR1 -709 868 764 946 140 0 0 chr13 116459654 116459797 -3285101 - AluJb SINE Alu -13 299 157 903 237 74 18 chr13 116460288 116460571 -3284327 + L1ME1 LINE L1 5863 6161 -5 2047 102 0 7 chr13 116460864 116461168 -3283730 + AluSx SINE Alu 1 302 -10 397 215 396 8 chr13 116461232 116461588 -3283310 + MLT1D LTR MaLR 5 462 -5 2436 240 25 59 chr13 116461931 116462784 -3282114 - L1M4 LINE L1 -1756 4390 3567 573 276 31 26 chr13 116463847 116464039 -3280859 - MLT1E LTR MaLR -117 476 284 1315 123 0 0 chr13 116464670 116464857 -3280041 + AluJo SINE Alu 1 187 -125 228 180 49 33 chr13 116464870 116464931 -3279967 - MER4D LTR ERV1 -8 864 803 282 164 0 18 chr13 116464946 116465001 -3279897 - MER4C LTR ERV1 -109 356 303 278 206 73 96 chr13 116465394 116465613 -3279285 + L1MC5 LINE L1 7701 7914 -47 437 206 97 12 chr13 116465790 116465955 -3278943 + L1M4 LINE L1 4326 4504 -1642 596 189 79 0 chr13 116465955 116466082 -3278816 - Charlie1a DNA MER1_type -356 1099 963 711 254 39 78 chr13 116466214 116466521 -3278377 + MER51C LTR ERV1 346 640 0 2643 226 141 14 chr13 116466521 116466730 -3278168 - Charlie1a DNA MER1_type -1794 967 786 2100 94 0 23 chr13 116466730 116467029 -3277869 + AluSg SINE Alu 1 292 -18 2643 226 141 14 chr13 116467029 116467194 -3277704 - Charlie1a DNA MER1_type -1975 786 643 1503 175 7 10 chr13 116467194 116467486 -3277412 - AluJo SINE Alu -13 299 9 2643 226 141 14 chr13 116467486 116467968 -3276930 - Charlie1a DNA MER1_type -2118 643 1 24 0 0 0 chr13 116468209 116468233 -3276665 + GC_rich Low_complexity Low_complexity 1 24 0 228 67 0 0 chr13 116468475 116468505 -3276393 + (TCCCC)n Simple_repeat Simple_repeat 5 34 0 713 204 47 37 chr13 116468554 116468745 -3276153 + Charlie2a DNA MER1_type 1471 1663 -1199 297 173 96 48 chr13 116468914 116469018 -3275880 - L1MC4 LINE L1 0 8042 7934 5033 223 33 20 chr13 116469020 116470499 -3274399 - L1M4 LINE L1 -659 6017 4510 1831 220 48 20 chr13 116470560 116471014 -3273884 - MLT1C LTR MaLR 0 467 1 1634 177 62 70 chr13 116471017 116471419 -3273479 - MLT1C-int LTR MaLR -3 1368 970 * 1850 241 135 8 chr13 116471414 116471949 -3272949 - L1M4 LINE L1 -5939 603 1 1029 149 45 14 chr13 116471992 116472213 -3272685 - L1MB3 LINE L1 -4 6179 5952 1241 274 74 25 chr13 116472681 116472900 -3271998 - L1ME3A LINE L1 -8 6162 5955 2398 113 19 29 chr13 116472900 116473279 -3271619 + THE1C LTR MaLR 1 375 0 1241 274 74 25 chr13 116473279 116473505 -3271393 - L1ME3A LINE L1 -215 5955 5695 559 322 64 6 chr13 116473500 116473904 -3270994 + L1ME LINE L1 5234 5671 -499 * 215 262 136 87 chr13 116474050 116474153 -3270745 + MER5B DNA MER1_type 70 177 -1 600 331 132 36 chr13 116474265 116474842 -3270056 + HAL1 LINE L1 1036 1667 -840 353 328 179 0 chr13 116475893 116476088 -3268810 + L1 LINE L1 2374 2603 -3543 240 35 0 0 chr13 116476117 116476146 -3268752 + (TG)n Simple_repeat Simple_repeat 1 29 0 1561 132 35 16 chr13 116476282 116476540 -3268358 - AluJo SINE Alu -22 290 28 287 252 28 28 chr13 116476784 116476891 -3268007 + L1 LINE L1 4903 5009 -1137 2293 163 53 71 chr13 116476992 116477595 -3267303 + LTR5 LTR ERVK 378 969 0 3804 178 110 32 chr13 116477595 116478450 -3266448 + MER49 LTR ERV1 2 923 0 2572 248 84 37 chr13 116478450 116479589 -3265309 - L1MC4a LINE L1 -617 7191 5971 429 239 137 34 chr13 116479597 116479802 -3265096 - Charlie2 DNA MER1_type -2580 282 57 2086 88 26 16 chr13 116483124 116483430 -3261468 + AluSc SINE Alu 1 309 0 266 256 103 13 chr13 116483771 116483849 -3261049 + L2 LINE L2 3159 3243 -29 202 309 107 47 chr13 116488524 116488673 -3256225 + MER5B DNA MER1_type 1 158 -20 317 313 80 33 chr13 116489485 116489635 -3255263 - L3 LINE CR1 -628 949 793 956 118 0 22 chr13 116489730 116489866 -3255032 - FLAM_C SINE Alu 0 133 1 2019 122 52 0 chr13 116490702 116490989 -3253909 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr13 116491224 116491246 -3253652 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr13 116492956 116492980 -3251918 + (A)n Simple_repeat Simple_repeat 1 24 0 2111 119 0 17 chr13 116493853 116494155 -3250743 + AluSx SINE Alu 2 298 -14 1157 217 77 4 chr13 116495169 116495441 -3249457 - MER58B DNA MER1_type -16 325 34 485 182 232 28 chr13 116495498 116495679 -3249219 - L1MA5 LINE L1 -36 6264 6047 1364 159 50 50 chr13 116495688 116495965 -3248933 - AluJo SINE Alu -24 288 12 2844 147 59 4 chr13 116495965 116496477 -3248421 - L1MA5 LINE L1 -337 5963 5424 1106 170 0 57 chr13 116497120 116497295 -3247603 - AluJb SINE Alu -11 301 138 2543 83 0 3 chr13 116497295 116497609 -3247289 - AluSq SINE Alu 0 313 1 1106 170 0 57 chr13 116497609 116497645 -3247253 - AluJb SINE Alu -174 138 102 715 189 0 0 chr13 116498482 116498604 -3246294 + FLAM_C SINE Alu 1 122 -21 22 0 0 0 chr13 116498912 116498934 -3245964 + AT_rich Low_complexity Low_complexity 1 22 0 1880 169 0 23 chr13 116500317 116500624 -3244274 + AluJo SINE Alu 7 306 -6 21 36 0 0 chr13 116500970 116500998 -3243900 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr13 116503795 116503844 -3241054 + AT_rich Low_complexity Low_complexity 1 49 0 191 291 105 0 chr13 116504203 116504289 -3240609 - MIR3 SINE MIR -48 160 66 2173 9 0 0 chr13 116505629 116505859 -3239039 - AluYa5 SINE Alu -7 304 75 253 197 66 0 chr13 116507813 116507874 -3237024 - MIR SINE MIR -109 153 89 214 309 29 0 chr13 116508871 116508939 -3235959 + MIR SINE MIR 35 104 -104 2315 84 0 7 chr13 116509720 116510007 -3234891 + AluSx SINE Alu 1 285 -27 1986 131 3 41 chr13 116510038 116510358 -3234540 + AluSx SINE Alu 2 309 -3 231 133 44 22 chr13 116510640 116510685 -3234213 - L2 LINE L2 -7 3265 3220 298 279 237 11 chr13 116510969 116511231 -3233667 + Tigger8 DNA MER2_type 246 566 -100 24 32 0 0 chr13 116513067 116513098 -3231800 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 116513580 116513601 -3231297 + GC_rich Low_complexity Low_complexity 1 21 0 200 374 0 0 chr13 116515015 116515114 -3229784 - MIR SINE MIR -65 143 45 4225 86 4 7 chr13 116515449 116516005 -3228893 + MER41A LTR ERV1 1 554 0 830 187 0 48 chr13 116516771 116516937 -3227961 - AluJb SINE Alu -18 294 137 2130 144 67 20 chr13 116517367 116517544 -3227354 + MLT1C LTR MaLR 6 173 -294 2129 96 3 36 chr13 116517544 116517846 -3227052 + AluSp SINE Alu 17 308 -5 2130 144 67 20 chr13 116517846 116518072 -3226826 + MLT1C LTR MaLR 173 428 -39 183 42 0 0 chr13 116518918 116518942 -3225956 + (TC)n Simple_repeat Simple_repeat 1 24 0 231 233 0 93 chr13 116518944 116519030 -3225868 + L2 LINE L2 3235 3312 -1 276 220 22 66 chr13 116520293 116520384 -3224514 + MIR SINE MIR 108 194 -68 228 295 27 36 chr13 116520428 116520540 -3224358 - L1ME LINE L1 -589 5577 5467 583 235 121 69 chr13 116521018 116521282 -3223616 + L1M4 LINE L1 4979 5273 -873 1865 186 14 17 chr13 116521282 116521631 -3223267 - MER7A DNA MER2_type 0 346 1 583 235 121 69 chr13 116521631 116521770 -3223128 + L1M4 LINE L1 5273 5403 -743 1224 298 219 19 chr13 116521877 116522859 -3222039 + L2 LINE L2 1729 2906 -408 4066 92 18 0 chr13 116523243 116523787 -3221111 + MER41A LTR ERV1 1 554 0 576 151 0 50 chr13 116523843 116523962 -3220936 + Charlie5 DNA MER1_type 18 130 -2482 * 1284 196 33 75 chr13 116523956 116524354 -3220544 + Charlie5 DNA MER1_type 2234 2614 0 3470 81 16 0 chr13 116524360 116524806 -3220092 + MLT2A2 LTR ERVL 1 453 0 730 256 100 73 chr13 116525299 116525360 -3219538 - L1ME4a LINE L1 -16 6105 6047 4159 90 10 7 chr13 116525360 116525936 -3218962 + L1PA11 LINE L1 5597 6174 0 730 256 100 73 chr13 116525936 116526026 -3218872 - L1ME4a LINE L1 -74 6047 5961 1168 175 48 18 chr13 116526026 116526255 -3218643 + MER46A DNA MER2_type 1 236 0 730 256 100 73 chr13 116526255 116526719 -3218179 - L1ME4a LINE L1 -160 5961 5475 243 146 0 0 chr13 116526729 116526770 -3218128 - L2 LINE L2 -4 3309 3269 1122 95 20 0 chr13 116527193 116527341 -3217557 - FRAM SINE Alu -15 161 11 281 226 97 21 chr13 116528102 116528195 -3216703 - L1ME4a LINE L1 -1317 4829 4730 230 293 75 34 chr13 116528775 116528922 -3215976 + MER91A DNA MER1_type 3 155 -41 404 273 73 78 chr13 116529106 116529491 -3215407 + L1MEc LINE L1 2099 2481 -3915 818 294 33 16 chr13 116529978 116530284 -3214614 - L1MD2 LINE L1 -21 6338 6028 708 111 0 0 chr13 116530332 116530440 -3214458 - AluSg/x SINE Alu 0 312 205 1232 137 0 59 chr13 116530440 116530659 -3214239 - AluJb SINE Alu -20 292 87 2166 201 63 62 chr13 116530681 116531233 -3213665 - L1MD2 LINE L1 -355 6004 5452 380 269 70 19 chr13 116531999 116532155 -3212743 + BaEV-int LTR ERV1 207 370 -6279 562 323 13 13 chr13 116532381 116532610 -3212288 + BaEV-int LTR ERV1 778 1006 -6779 1701 297 60 51 chr13 116532800 116533760 -3211138 + BaEV-int LTR ERV1 936 2322 -4860 2438 66 0 7 chr13 116533760 116534061 -3210837 - AluY SINE Alu -12 299 1 1701 297 60 51 chr13 116534061 116534444 -3210454 + BaEV-int LTR ERV1 2322 2700 -4482 1502 302 30 26 chr13 116538324 116539026 -3205872 + BaEV-int LTR ERV1 2951 3655 -4130 357 188 12 25 chr13 116539273 116539353 -3205545 - L1MDb LINE L1 -5279 1130 1052 1096 244 84 47 chr13 116539372 116539822 -3205076 - MLT1C LTR MaLR 0 467 1 472 292 30 6 chr13 116539822 116539990 -3204908 - L1MDb LINE L1 -5387 1022 851 2050 150 36 33 chr13 116540351 116540712 -3204186 + THE1B LTR MaLR 3 364 0 321 278 64 70 chr13 116540819 116541006 -3203892 + MIR SINE MIR 12 197 -65 2123 92 0 7 chr13 116541181 116541465 -3203433 + AluSx SINE Alu 3 284 -28 733 86 0 0 chr13 116541465 116541492 -3203406 + AluSq SINE Alu 3 313 0 297 304 88 0 chr13 116541639 116541764 -3203134 - MIR3 SINE MIR -8 200 65 218 0 94 0 chr13 116542335 116542367 -3202531 + T-rich Low_complexity Low_complexity 2 36 0 971 206 42 114 chr13 116542704 116543107 -3201791 + MLT2D LTR ERVL 1 374 -40 677 170 7 0 chr13 116543108 116543249 -3201649 + (CA)n Simple_repeat Simple_repeat 1 142 0 537 247 47 75 chr13 116543860 116544099 -3200799 - MIR SINE MIR -16 246 11 325 259 95 9 chr13 116545350 116545466 -3199432 + L2 LINE L2 3187 3312 -1 2577 105 16 11 chr13 116547777 116548150 -3196748 + THE1C LTR MaLR 1 375 0 237 272 89 16 chr13 116550339 116550455 -3194443 + MIR SINE MIR 75 192 -65 362 301 61 12 chr13 116551378 116551541 -3193357 + MIR SINE MIR 63 233 -29 279 277 53 0 chr13 116551624 116551718 -3193180 - MER81 DNA DNA -15 99 1 187 301 96 0 chr13 116552330 116552413 -3192485 - L2 LINE L2 -14 3258 3168 615 235 81 85 chr13 116553181 116553615 -3191283 + MER89 LTR ERV1 128 559 0 222 167 0 0 chr13 116554360 116554396 -3190502 + MIR SINE MIR 113 148 -60 550 292 136 0 chr13 116554434 116554677 -3190221 + MER33 DNA MER1_type 49 324 0 231 312 35 21 chr13 116554685 116554826 -3190072 + MER5B DNA MER1_type 1 143 -35 310 155 0 84 chr13 116554955 116555026 -3189872 - MER5A DNA MER1_type -121 68 4 1402 191 51 96 chr13 116555454 116555925 -3188973 - LTR7 LTR ERV1 0 450 1 196 291 173 0 chr13 116555925 116556052 -3188846 + MIR SINE MIR 36 184 -78 4023 101 13 0 chr13 116556254 116556799 -3188099 + MER41A LTR ERV1 1 552 -2 5451 117 55 33 chr13 116556801 116557497 -3187401 + MER41A-int LTR ERV1 1 680 -5266 1665 42 0 32 chr13 116557497 116557714 -3187184 + AluY SINE Alu 101 310 -1 5451 117 55 33 chr13 116557714 116558682 -3186216 + MER41A-int LTR ERV1 680 1789 -4157 740 115 0 0 chr13 116558654 116558758 -3186140 + MER41A-int LTR ERV1 1950 2053 -4210 * 2240 88 7 3 chr13 116558773 116559081 -3185817 + AluSp SINE Alu 5 313 0 345 102 0 0 chr13 116559106 116559155 -3185743 + MER41A-int LTR ERV1 2575 2623 -4914 * 3515 143 36 38 chr13 116559153 116559760 -3185138 + MER41A-int LTR ERV1 2163 2768 -3178 * 11101 103 50 15 chr13 116559756 116560458 -3184440 + MER41A-int LTR ERV1 4195 4871 -1075 1947 145 0 3 chr13 116560458 116560754 -3184144 + AluSx SINE Alu 1 295 -17 11101 103 50 15 chr13 116560754 116561742 -3183156 + MER41A-int LTR ERV1 4871 5944 -2 3802 127 2 14 chr13 116561742 116562301 -3182597 + MER41A LTR ERV1 1 552 -2 1637 193 70 109 chr13 116563347 116563917 -3180981 + LTR10A LTR ERV1 1 548 -61 866 258 69 18 chr13 116563926 116564201 -3180697 + LTR10A-int LTR ERV1 1 289 -6360 16895 232 24 25 chr13 116564266 116568665 -3176233 + LTR10A-int LTR ERV1 534 3879 -2770 1195 188 50 97 chr13 116569127 116569510 -3175388 - MLT1A1 LTR MaLR 0 365 1 363 134 158 0 chr13 116570887 116570969 -3173929 - L1MC2 LINE L1 0 6344 6250 782 276 51 38 chr13 116570985 116571376 -3173522 - HAL1b LINE L1 -907 441 46 188 149 21 0 chr13 116572907 116572954 -3171944 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 2278 107 51 28 chr13 116573108 116573464 -3171434 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr13 116573601 116573631 -3171267 + AT_rich Low_complexity Low_complexity 1 30 0 1487 239 73 8 chr13 116574194 116574566 -3170332 + MSTD LTR MaLR 1 396 0 1045 231 24 119 chr13 116574834 116575430 -3169468 + MER34 LTR ERV1 4 542 0 386 232 89 0 chr13 116576098 116576210 -3168688 - L1MC4 LINE L1 -3 8039 7918 222 151 19 57 chr13 116576210 116576263 -3168635 + CT-rich Low_complexity Low_complexity 2 52 0 448 316 71 36 chr13 116576595 116576791 -3168107 + MIR SINE MIR 12 214 -48 1656 219 14 43 chr13 116577218 116577276 -3167622 + MLT1A1 LTR MaLR 7 65 -300 2491 127 3 3 chr13 116577276 116577639 -3167259 - THE1B LTR MaLR 0 364 2 1656 219 14 43 chr13 116577639 116577950 -3166948 + MLT1A1 LTR MaLR 65 365 0 665 222 92 13 chr13 116578536 116578782 -3166116 - Charlie4a DNA MER1_type -157 351 37 1132 258 39 48 chr13 116579463 116579951 -3164947 + MER39 LTR ERV1 5 707 0 2050 89 7 4 chr13 116580499 116580828 -3164070 - AluSg SINE Alu 0 330 1 368 215 9 0 chr13 116582100 116582207 -3162691 + (CA)n Simple_repeat Simple_repeat 1 108 0 503 274 53 63 chr13 116582209 116582494 -3162404 + L2 LINE L2 3032 3313 0 1501 195 191 62 chr13 116582525 116582991 -3161907 - MER21A LTR ERV1 -6 925 400 * 3781 177 90 18 chr13 116582985 116583772 -3161126 - MER21B LTR ERV1 -19 844 1 3607 135 37 16 chr13 116583811 116584284 -3160614 + LTR24C LTR ERV1 1 492 -143 2709 214 65 37 chr13 116584284 116584986 -3159912 + MER72 LTR ERV1 1 722 0 3607 135 37 16 chr13 116584986 116585134 -3159764 + LTR24C LTR ERV1 492 635 0 210 333 116 29 chr13 116585168 116585306 -3159592 + L2 LINE L2 3164 3313 0 1664 141 124 103 chr13 116585721 116586140 -3158758 + MSTA LTR MaLR 1 428 0 2179 152 62 3 chr13 116591042 116591416 -3153482 + MSTD LTR MaLR 1 396 0 445 145 12 0 chr13 116591518 116591601 -3153297 - L1MA8 LINE L1 -5 6286 6203 1121 203 25 4 chr13 116591747 116591983 -3152915 - L1MD1 LINE L1 0 6242 6002 582 119 0 0 chr13 116591988 116592072 -3152826 + L1PA10 LINE L1 420 503 -5372 27243 142 10 10 chr13 116592077 116597795 -3147103 + L1PA10 LINE L1 771 6481 -2 210 314 88 29 chr13 116598539 116598676 -3146222 + MIR SINE MIR 3 147 -115 1479 195 55 42 chr13 116598684 116599073 -3145825 + MLT1B LTR MaLR 1 400 -9 273 294 129 36 chr13 116599624 116599903 -3144995 - L2 LINE L2 -25 3288 2984 561 193 80 7 chr13 116599979 116600129 -3144769 + LTR37A LTR ERV1 100 260 -166 824 106 0 16 chr13 116600346 116600469 -3144429 - MER4-int LTR ERV1 -6375 223 103 359 235 29 29 chr13 116600482 116600618 -3144280 + MER31-int LTR ERV1 1751 1886 -3050 474 143 24 24 chr13 116600623 116600707 -3144191 - MER4A-int LTR ERV1 -6513 85 2 2446 114 24 39 chr13 116600711 116601308 -3143590 - MER4A LTR ERV1 0 664 9 2405 88 3 0 chr13 116601309 116601614 -3143284 + AluSp SINE Alu 1 306 -7 234 0 0 0 chr13 116601785 116601811 -3143087 + (TG)n Simple_repeat Simple_repeat 2 27 0 536 257 32 32 chr13 116602117 116602335 -3142563 + MER31-int LTR ERV1 1698 1915 -3021 1235 253 68 31 chr13 116602428 116602910 -3141988 - MLT2B1 LTR ERVL -19 501 2 614 233 52 31 chr13 116603032 116603225 -3141673 - Charlie1 DNA MER1_type -2 2759 2563 257 268 0 0 chr13 116603216 116603272 -3141626 - Charlie1 DNA MER1_type -2655 106 51 * 1213 214 37 12 chr13 116603475 116603802 -3141096 + MER31A LTR ERV1 147 481 -4 1378 246 102 23 chr13 116603930 116604447 -3140451 - MER89 LTR ERV1 0 559 2 367 181 112 60 chr13 116605210 116605240 -3139658 - L1PB4 LINE L1 0 6156 6129 1870 157 133 13 chr13 116605240 116605622 -3139276 - MSTA LTR MaLR 0 428 1 367 181 112 60 chr13 116605622 116605707 -3139191 - L1PB4 LINE L1 -27 6129 6035 450 252 6 63 chr13 116605795 116605954 -3138944 - L1MC4 LINE L1 -152 7890 7741 7868 140 21 9 chr13 116606130 116607190 -3137708 - HSMAR2 DNA Mariner -1 1301 221 1491 205 17 24 chr13 116607190 116607487 -3137411 + AluJo SINE Alu 4 298 -14 7868 140 21 9 chr13 116607487 116607710 -3137188 - HSMAR2 DNA Mariner -1081 221 2 524 255 0 0 chr13 116608121 116608223 -3136675 + Tigger3b DNA MER2_type 1 102 -1129 * 5394 110 86 2 chr13 116608221 116609085 -3135813 + Tigger3b DNA MER2_type 274 1209 -22 608 257 121 44 chr13 116610035 116610455 -3134443 + MLT1H LTR MaLR 14 492 -57 1643 247 69 55 chr13 116610896 116611478 -3133420 - MLT1G1 LTR MaLR 0 595 6 947 131 150 0 chr13 116612363 116612516 -3132382 - AluJb SINE Alu -11 301 126 711 118 0 0 chr13 116612516 116612618 -3132280 + AluJo/FLAM SINE Alu 28 129 -183 272 137 59 0 chr13 116612618 116612669 -3132229 - AluJb SINE Alu -158 144 91 22 35 0 0 chr13 116612826 116612855 -3132043 + GC_rich Low_complexity Low_complexity 1 29 0 185 0 40 0 chr13 116613473 116613498 -3131400 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 332 152 15 0 chr13 116614572 116614638 -3130260 + CT-rich Low_complexity Low_complexity 2 68 0 768 173 0 0 chr13 116614638 116614771 -3130127 - AluJ SINE Alu -169 133 1 1193 224 45 9 chr13 116615898 116616264 -3128634 - MLT1C LTR MaLR -68 399 1 387 294 0 0 chr13 116617257 116617437 -3127461 + (CA)n Simple_repeat Simple_repeat 1 180 0 203 319 78 9 chr13 116618660 116618776 -3126122 + MIR SINE MIR 31 154 -108 345 213 13 0 chr13 116619857 116619923 -3124975 - LTR33 LTR ERVL -413 108 42 1153 220 84 18 chr13 116619923 116620255 -3124643 + MLT1H LTR MaLR 1 354 -195 232 238 0 0 chr13 116620513 116620576 -3124322 - HAL1 LINE L1 -1215 1292 1230 558 244 12 19 chr13 116620591 116620751 -3124147 - MIR SINE MIR -10 252 94 27 0 0 0 chr13 116620769 116620796 -3124102 + GC_rich Low_complexity Low_complexity 1 27 0 304 258 118 90 chr13 116620846 116621268 -3123630 - HAL1 LINE L1 -1335 1172 739 2190 122 0 0 chr13 116621663 116621959 -3122939 - AluSx SINE Alu -16 296 1 2298 102 3 0 chr13 116623108 116623403 -3121495 + AluSx SINE Alu 1 296 -16 6937 218 56 76 chr13 116623759 116624275 -3120623 + L1ME1 LINE L1 3061 3586 -2580 1826 140 63 23 chr13 116624275 116624575 -3120323 + AluJb SINE Alu 1 312 0 6937 218 56 76 chr13 116624575 116625239 -3119659 + L1ME1 LINE L1 3586 4262 -1904 1129 126 0 0 chr13 116625239 116625426 -3119472 + AluSg/x SINE Alu 129 315 0 6937 218 56 76 chr13 116625426 116627258 -3117640 + L1ME1 LINE L1 4262 6159 -7 230 294 56 35 chr13 116629076 116629219 -3115679 - Tigger8 DNA MER2_type -171 495 350 212 253 0 23 chr13 116629804 116629891 -3115007 + (CATA)n Simple_repeat Simple_repeat 2 86 0 226 333 0 0 chr13 116629902 116629992 -3114906 + L1MC4 LINE L1 6614 6703 -1339 285 232 0 0 chr13 116630052 116630121 -3114777 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 514 297 0 28 chr13 116630146 116630328 -3114570 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 400 264 41 0 chr13 116630540 116630661 -3114237 - MER5A DNA MER1_type -3 186 61 453 19 0 0 chr13 116630662 116630716 -3114182 + (TA)n Simple_repeat Simple_repeat 1 54 0 14321 31 3 3 chr13 116630719 116633161 -3111737 - L1PA5 LINE L1 -11 6143 3692 8167 39 1 0 chr13 116633161 116634153 -3110745 + L1P LINE L1 2651 3643 -2503 409 162 14 0 chr13 116634153 116634227 -3110671 - MER5A DNA MER1_type -114 75 1 23 54 0 0 chr13 116634578 116634615 -3110283 + AT_rich Low_complexity Low_complexity 1 37 0 2309 103 3 0 chr13 116634936 116635236 -3109662 + AluSp SINE Alu 1 301 -12 1205 131 0 0 chr13 116635236 116635404 -3109494 + AluSg/x SINE Alu 134 301 -11 1075 186 60 18 chr13 116635849 116636134 -3108764 + L1MDb LINE L1 1033 1329 -5080 386 279 7 7 chr13 116636206 116636353 -3108545 + CT-rich Low_complexity Low_complexity 2 148 0 699 248 102 40 chr13 116637051 116637576 -3107322 - L2 LINE L2 -1 3312 2768 1522 168 52 45 chr13 116637584 116637894 -3107004 - AluJo SINE Alu 0 312 1 2020 174 37 3 chr13 116637894 116638274 -3106624 - L1MC2 LINE L1 -15 6329 5937 824 184 92 0 chr13 116638278 116638430 -3106468 - MER21B LTR ERV1 -369 494 329 3936 145 35 16 chr13 116638434 116639183 -3105715 - L1MC2 LINE L1 -395 5949 5189 272 185 46 0 chr13 116639184 116639249 -3105649 - L2 LINE L2 -528 2786 2719 391 266 116 60 chr13 116641959 116642192 -3102706 - L1MC4a LINE L1 -1850 5958 5713 423 201 196 52 chr13 116642231 116642460 -3102438 - LTR33 LTR ERVL -7 514 253 467 238 66 0 chr13 116642464 116642586 -3102312 + MER63 DNA MER1_type 2 757 -305 476 152 0 13 chr13 116642648 116642727 -3102171 - LTR33 LTR ERVL -364 157 80 297 350 26 0 chr13 116642753 116642870 -3102028 + MIR3 SINE MIR 81 200 -8 460 180 331 0 chr13 116643206 116643345 -3101553 + MER5A DNA MER1_type 5 189 0 238 233 52 176 chr13 116643358 116643551 -3101347 + MER5B DNA MER1_type 1 169 -9 1764 186 51 16 chr13 116644077 116644449 -3100449 - L1MC4a LINE L1 -437 5727 5343 2752 10 0 0 chr13 116644637 116644943 -3099955 - AluYa5 SINE Alu -5 306 1 257 257 96 46 chr13 116645154 116645294 -3099604 - MIR SINE MIR -61 201 57 947 259 24 57 chr13 116645354 116645686 -3099212 + Charlie2 DNA MER1_type 1 321 -2541 1434 201 70 68 chr13 116645688 116646076 -3098822 + Charlie2 DNA MER1_type 1855 2246 -616 956 106 0 8 chr13 116646076 116646208 -3098690 + FLAM_C SINE Alu 3 133 0 1434 201 70 68 chr13 116646208 116646362 -3098536 + Charlie2 DNA MER1_type 2246 2398 -464 896 238 5 0 chr13 116646382 116646584 -3098314 + MER82 DNA MER2_type 2 204 -449 604 304 71 68 chr13 116647401 116648330 -3096568 - Tigger2 DNA MER2_type -770 1948 1017 2461 195 16 7 chr13 116648571 116649022 -3095876 + MER82 DNA MER2_type 199 653 0 791 199 183 13 chr13 116649056 116649357 -3095541 + Charlie2 DNA MER1_type 2483 2834 -28 25 0 0 0 chr13 116650556 116650581 -3094317 + GC_rich Low_complexity Low_complexity 1 25 0 226 280 0 0 chr13 116651792 116651842 -3093056 + MIR SINE MIR 100 149 -59 897 215 211 0 chr13 116651869 116652153 -3092745 - MER2 DNA MER2_type 0 344 1 2113 84 13 29 chr13 116652740 116653049 -3091849 + AluSx SINE Alu 1 304 -8 390 195 0 37 chr13 116653166 116653248 -3091650 + L2 LINE L2 3234 3312 -1 21 0 0 0 chr13 116654148 116654169 -3090729 + AT_rich Low_complexity Low_complexity 1 21 0 895 115 0 0 chr13 116654344 116654466 -3090432 + AluSq/x SINE Alu 1 122 -191 427 108 0 0 chr13 116654466 116654531 -3090367 + Alu SINE Alu 234 298 -12 959 105 8 0 chr13 116654770 116654903 -3089995 - AluJb SINE Alu -178 134 1 451 270 69 26 chr13 116654912 116655101 -3089797 - L1MC/D LINE L1 -2036 5772 5576 187 241 139 51 chr13 116655126 116655205 -3089693 - L2 LINE L2 -14 3299 3214 2194 100 17 0 chr13 116655368 116655668 -3089230 + AluSx SINE Alu 1 305 -7 228 195 0 35 chr13 116655765 116655852 -3089046 - HAL1b LINE L1 -1 1347 1264 * 1107 174 5 24 chr13 116655849 116656061 -3088837 + L1M3 LINE L1 5579 5786 -397 358 232 0 68 chr13 116656076 116656200 -3088698 - L1MC4 LINE L1 -1340 6982 1995 335 199 19 124 chr13 116656180 116656341 -3088557 - L1MC4 LINE L1 -4361 2065 1922 * 315 264 43 68 chr13 116656264 116656373 -3088525 + L1MCa LINE L1 1980 2085 -4341 * 2130 126 14 80 chr13 116656373 116656705 -3088193 + L1MB3 LINE L1 5776 6074 -109 1895 132 173 16 chr13 116656705 116657075 -3087823 + MSTA LTR MaLR 1 428 0 2130 126 14 80 chr13 116657075 116657179 -3087719 + L1MB3 LINE L1 6074 6183 0 315 264 43 68 chr13 116657179 116657232 -3087666 + L1MCa LINE L1 2085 2138 -4288 216 0 0 0 chr13 116657375 116657399 -3087499 + (T)n Simple_repeat Simple_repeat 1 24 0 893 280 119 39 chr13 116657425 116657986 -3086912 - HAL1b LINE L1 -421 927 322 1351 274 47 5 chr13 116657998 116658400 -3086498 + L1ME1 LINE L1 5400 5818 -346 7888 18 3 0 chr13 116658736 116660228 -3084670 - L1PA2 LINE L1 0 6155 4662 812 269 80 32 chr13 116661174 116661512 -3083386 + L1ME1 LINE L1 5808 6161 -5 461 236 125 32 chr13 116661533 116661749 -3083149 - HAL1b LINE L1 -1017 331 96 4113 155 92 42 chr13 116662210 116663095 -3081803 + L1MA4A LINE L1 5371 6299 -4 2574 93 25 5 chr13 116663681 116664048 -3080850 - L1PA13 LINE L1 0 6163 5790 252 314 113 16 chr13 116664062 116664256 -3080642 + L1MC4 LINE L1 7690 7902 -140 2269 200 76 79 chr13 116664511 116665263 -3079635 + L1M2 LINE L1 4601 5323 -934 189 0 0 0 chr13 116665263 116665284 -3079614 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2269 200 76 79 chr13 116665284 116665476 -3079422 + L1M2 LINE L1 5323 5514 -743 1139 270 93 25 chr13 116665476 116666349 -3078549 + L1ME1 LINE L1 2784 3842 -2304 2378 168 16 5 chr13 116666349 116666772 -3078126 - MSTA LTR MaLR 0 428 1 1139 270 93 25 chr13 116666772 116667277 -3077621 + L1ME1 LINE L1 3842 4312 -1834 1035 153 0 0 chr13 116667277 116667434 -3077464 - AluJb SINE Alu -21 291 135 378 317 104 11 chr13 116667519 116667702 -3077196 + L1ME1 LINE L1 4419 4618 -1528 1380 254 20 17 chr13 116668152 116668499 -3076399 - MER4D LTR ERV1 -7 896 549 306 261 87 8 chr13 116668507 116668667 -3076231 - LTR39 LTR ERV1 -401 382 1 2144 117 3 0 chr13 116668970 116669278 -3075620 + AluSc SINE Alu 1 309 0 381 131 0 0 chr13 116669285 116669346 -3075552 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 604 253 83 42 chr13 116673068 116673309 -3071589 + MLT1C LTR MaLR 55 305 -162 644 166 17 16 chr13 116673436 116673678 -3071220 + GA-rich Low_complexity Low_complexity 1 242 0 32 35 0 18 chr13 116674583 116674607 -3070291 + AT_rich Low_complexity Low_complexity 1 24 -32 927 192 0 0 chr13 116674607 116674758 -3070140 + FRAM SINE Alu 2 152 -14 32 35 0 18 chr13 116674758 116674790 -3070108 + AT_rich Low_complexity Low_complexity 24 56 0 426 263 169 58 chr13 116674988 116675574 -3069324 + L1ME1 LINE L1 5265 5915 -206 706 212 101 0 chr13 116676146 116676344 -3068554 - MER20 DNA MER1_type -1 218 1 1460 147 0 23 chr13 116676662 116676920 -3067978 - AluSx SINE Alu 0 312 61 463 335 23 0 chr13 116677475 116677651 -3067247 - Charlie8 DNA MER1_type -2220 197 18 385 221 12 12 chr13 116678616 116678702 -3066196 - MLT1C LTR MaLR -381 86 1 245 324 49 29 chr13 116679640 116679742 -3065156 - L2 LINE L2 0 3272 3169 1104 321 60 2 chr13 116679809 116680261 -3064637 - L1MEc LINE L1 -3455 2760 2283 355 339 73 31 chr13 116680617 116680809 -3064089 - L1MEc LINE L1 -4263 2133 1934 1183 118 0 0 chr13 116680955 116681124 -3063774 - AluJb SINE Alu -143 169 1 360 181 64 32 chr13 116681130 116681224 -3063674 + MLT1L LTR MaLR 517 613 -2 2200 100 0 3 chr13 116681583 116681882 -3063016 + AluSx SINE Alu 1 298 -14 243 288 48 32 chr13 116683390 116683515 -3061383 + L1ME1 LINE L1 6036 6162 -4 237 262 94 54 chr13 116684050 116684115 -3060783 + MIR SINE MIR 92 153 -109 183 100 0 0 chr13 116684115 116684145 -3060753 + (CAA)n Simple_repeat Simple_repeat 3 32 0 237 262 94 54 chr13 116684145 116684228 -3060670 + MIR SINE MIR 153 246 -16 584 173 11 38 chr13 116684309 116684494 -3060404 + (CA)n Simple_repeat Simple_repeat 1 180 0 611 174 17 22 chr13 116684556 116684734 -3060164 + (CA)n Simple_repeat Simple_repeat 2 178 0 225 215 25 13 chr13 116684746 116684825 -3060073 + (CA)n Simple_repeat Simple_repeat 2 81 0 2528 268 81 45 chr13 116685533 116686714 -3058184 + ERVL LTR ERVL 949 2208 -3556 206 250 145 0 chr13 116687539 116687615 -3057283 - MIR3 SINE MIR -39 169 83 199 366 14 0 chr13 116687799 116687870 -3057028 + L2 LINE L2 3236 3307 -6 2039 79 0 8 chr13 116688110 116688376 -3056522 + AluSp SINE Alu 32 295 -18 2182 105 3 0 chr13 116689420 116689726 -3055172 - AluSx SINE Alu -5 307 1 221 196 18 0 chr13 116690361 116690417 -3054481 + (TG)n Simple_repeat Simple_repeat 1 57 0 180 315 0 0 chr13 116691379 116691525 -3053373 + (CA)n Simple_repeat Simple_repeat 1 146 0 227 276 0 9 chr13 116691551 116691667 -3053231 + (CA)n Simple_repeat Simple_repeat 1 115 0 227 314 128 0 chr13 116692173 116692275 -3052623 + MER34 LTR ERV1 40 154 -388 706 266 194 12 chr13 116692837 116693157 -3051741 + MER39 LTR ERV1 330 707 0 15529 162 23 3 chr13 116693368 116696452 -3048446 - L1PB1 LINE L1 -43 6824 3621 5965 74 30 4 chr13 116696452 116697212 -3047686 + LTR17 LTR ERV1 1 780 0 15529 162 23 3 chr13 116697212 116698441 -3046457 - L1PB1 LINE L1 -3246 3621 2418 2385 93 91 11 chr13 116698440 116699239 -3045659 - L1PB1 LINE L1 -5218 1645 634 * 1267 131 10 0 chr13 116699239 116699437 -3045461 - L1PB1 LINE L1 -6663 200 1 1685 150 181 27 chr13 116699633 116700057 -3044841 - LTR10A LTR ERV1 -61 548 13 234 226 71 12 chr13 116700344 116700428 -3044470 + L1MB2 LINE L1 5702 5790 -374 1671 189 17 3 chr13 116700463 116700754 -3044144 + AluJo SINE Alu 1 295 -17 1043 193 75 19 chr13 116700901 116701113 -3043785 + MER58A DNA MER1_type 1 224 0 2239 151 41 25 chr13 116703208 116703651 -3041247 + LTR7 LTR ERV1 1 450 0 396 293 127 0 chr13 116704039 116704189 -3040709 - MIR SINE MIR -74 188 20 3842 110 0 42 chr13 116704325 116704924 -3039974 + MER4B LTR ERV1 1 574 -36 260 178 0 0 chr13 116705727 116705772 -3039126 + L1MB2 LINE L1 5880 5924 -247 3887 163 29 1 chr13 116705772 116706464 -3038434 + MER50 LTR ERV1 1 711 -23 850 159 145 19 chr13 116706471 116706685 -3038213 + L1MB2 LINE L1 5930 6170 -1 2601 48 3 16 chr13 116707174 116707489 -3037409 + AluY SINE Alu 1 311 0 1689 280 52 38 chr13 116708412 116709086 -3035812 - L1ME3A LINE L1 -5 6165 5483 3000 168 16 47 chr13 116710213 116710850 -3034048 - L1MB3 LINE L1 -4 6179 5563 265 289 18 77 chr13 116711115 116711388 -3033510 + L1M4 LINE L1 1323 1579 -4963 5006 47 14 3 chr13 116711388 116712409 -3032489 - MER11A LTR ERVK 0 1266 1 291 244 141 50 chr13 116712409 116712749 -3032149 + L1M4 LINE L1 1523 1893 -4751 * 404 224 36 48 chr13 116712737 116712902 -3031996 + L1MEc LINE L1 29 191 -6205 2219 114 3 7 chr13 116712983 116713280 -3031618 + AluSg SINE Alu 7 302 -8 361 276 119 16 chr13 116713290 116713475 -3031423 + L1MEc LINE L1 2800 3003 -3212 306 239 65 51 chr13 116713502 116713640 -3031258 - L1ME3A LINE L1 -214 5956 5817 16143 159 33 22 chr13 116714012 116715195 -3029703 - L1 LINE L1 -3740 3108 1940 1609 206 0 7 chr13 116715195 116715491 -3029407 - AluJo SINE Alu -18 294 1 16143 159 33 22 chr13 116715491 116717372 -3027526 - L1 LINE L1 -4908 1940 8 2164 134 0 7 chr13 116717430 116717736 -3027162 - AluSx SINE Alu -8 304 1 1393 158 15 54 chr13 116718526 116718785 -3026113 - AluJo SINE Alu -30 282 34 279 259 81 43 chr13 116719013 116719198 -3025700 - L1ME3 LINE L1 -211 5951 5760 907 278 33 16 chr13 116719204 116719589 -3025309 - L1MC4 LINE L1 0 8042 7565 598 252 117 84 chr13 116719936 116720143 -3024755 - L1ME3 LINE L1 -1479 4667 4468 2309 111 0 0 chr13 116720143 116720441 -3024457 - AluSx SINE Alu -13 299 2 598 252 117 84 chr13 116720441 116720877 -3024021 - L1ME3 LINE L1 -1678 4468 4003 888 269 83 38 chr13 116720879 116721220 -3023678 + MLT1A1 LTR MaLR 3 418 -8 505 252 35 71 chr13 116721613 116721839 -3023059 - ERVL LTR ERVL -651 5113 4896 1386 107 6 0 chr13 116721839 116722016 -3022882 - AluSp SINE Alu -135 178 1 824 289 62 35 chr13 116722021 116722668 -3022230 - ERVL LTR ERVL -1357 4407 3712 838 298 82 19 chr13 116722710 116723076 -3021822 - ERVL LTR ERVL -2637 3017 2629 662 112 0 0 chr13 116723160 116723249 -3021649 + AluJ/FLAM SINE Alu 2 90 -222 3848 141 101 40 chr13 116723260 116724659 -3020239 - pTR5 LTR ERV1 0 2606 1524 1229 154 0 0 chr13 116724685 116724873 -3020025 + AluJb SINE Alu 120 307 -5 835 272 54 8 chr13 116724873 116725134 -3019764 - ERVL LTR ERVL -3186 2578 2306 1785 217 77 78 chr13 116725147 116725611 -3019287 - L1ME1 LINE L1 -8 6158 5694 1692 183 0 16 chr13 116725611 116725917 -3018981 + AluJo SINE Alu 6 306 -6 1785 217 77 78 chr13 116725917 116726153 -3018745 - L1ME1 LINE L1 -472 5694 5459 239 235 0 0 chr13 116726208 116726259 -3018639 - L1MB7 LINE L1 -12 6172 6122 2115 133 8 46 chr13 116726322 116726422 -3018476 - L1PA16 LINE L1 -9 6157 6055 2071 139 45 14 chr13 116726422 116726775 -3018123 + THE1B LTR MaLR 1 364 0 2115 133 8 46 chr13 116726775 116726871 -3018027 - L1PA16 LINE L1 -111 6055 5957 2333 109 0 0 chr13 116726871 116727174 -3017724 - AluSg SINE Alu -7 303 1 2115 133 8 46 chr13 116727174 116727344 -3017554 - L1PA16 LINE L1 -209 5957 5804 1675 206 23 27 chr13 116727344 116727814 -3017084 - L1ME1 LINE L1 -730 5436 4966 482 257 6 23 chr13 116727924 116728099 -3016799 - L1ME1 LINE L1 -1707 4439 4268 1656 141 28 18 chr13 116728106 116728390 -3016508 + MER65A LTR ERV1 1 287 -158 842 206 19 0 chr13 116728391 116728551 -3016347 + AluJb SINE Alu 136 298 -14 869 100 7 40 chr13 116728553 116728703 -3016195 + MER65A LTR ERV1 283 427 -18 537 155 29 0 chr13 116728762 116728865 -3016033 - L1ME1 LINE L1 -1926 4220 4115 24 0 0 0 chr13 116728865 116728889 -3016009 + AT_rich Low_complexity Low_complexity 1 24 0 2264 54 4 0 chr13 116729076 116729356 -3015542 + L1PA4 LINE L1 5875 6155 0 29 28 0 0 chr13 116729374 116729410 -3015488 + AT_rich Low_complexity Low_complexity 1 36 0 1978 233 58 47 chr13 116729522 116730209 -3014689 - L1ME1 LINE L1 -2065 4081 3387 330 211 14 0 chr13 116730238 116730309 -3014589 + Charlie2 DNA MER1_type 2087 2158 -704 1587 223 150 12 chr13 116730685 116731264 -3013634 + Charlie2 DNA MER1_type 2158 2816 -46 584 226 26 0 chr13 116731285 116731400 -3013498 + FLAM_A SINE Alu 1 118 -15 333 0 0 0 chr13 116731403 116731440 -3013458 + (CA)n Simple_repeat Simple_repeat 1 37 0 643 193 99 12 chr13 116732382 116732553 -3012345 + MLT1B LTR MaLR 17 202 -188 640 180 99 12 chr13 116732621 116732782 -3012116 + MLT1B LTR MaLR 171 345 -29 381 295 28 88 chr13 116738764 116739333 -3005565 + HAL1 LINE L1 1141 1675 -832 204 291 12 0 chr13 116739947 116740033 -3004865 + A-rich Low_complexity Low_complexity 3 89 0 512 318 25 44 chr13 116740404 116740766 -3004132 + L1PA15 LINE L1 1 355 -7226 3716 163 14 43 chr13 116741448 116741888 -3003010 + L1PA15 LINE L1 2319 2770 -4804 2242 119 0 0 chr13 116741888 116742183 -3002715 + AluSx SINE Alu 1 295 -17 3716 163 14 43 chr13 116742183 116742194 -3002704 + L1PA15 LINE L1 2770 2780 -4794 2020 157 0 0 chr13 116742194 116742487 -3002411 + AluJb SINE Alu 1 293 -19 3716 163 14 43 chr13 116742487 116742803 -3002095 + L1PA15 LINE L1 2780 3065 -4509 934 158 38 0 chr13 116742828 116742986 -3001912 - MSTA LTR MaLR 0 428 265 706 132 0 9 chr13 116742994 116743100 -3001798 - MSTA LTR MaLR -321 105 1 11820 192 13 12 chr13 116743102 116745824 -2999074 + L1PA15 LINE L1 3099 5819 -1784 1841 168 10 0 chr13 116745824 116746133 -2998765 + AluJo SINE Alu 1 312 0 11820 192 13 12 chr13 116746133 116747914 -2996984 + L1PA15 LINE L1 5819 7598 -5 450 164 14 0 chr13 116747987 116748060 -2996838 + FLAM_A SINE Alu 33 106 -36 231 36 0 0 chr13 116748067 116748095 -2996803 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 971 200 31 25 chr13 116748158 116748483 -2996415 + L1MD3 LINE L1 6049 7995 0 4325 146 5 44 chr13 116748682 116748833 -2996065 + L1MA4 LINE L1 5517 5672 -628 1926 141 6 6 chr13 116748833 116749145 -2995753 + AluSx SINE Alu 1 312 0 4325 146 5 44 chr13 116749145 116749257 -2995641 + L1MA4 LINE L1 5672 5787 -513 1679 169 0 7 chr13 116749257 116749535 -2995363 + AluJo SINE Alu 5 280 -32 207 0 0 0 chr13 116749535 116749558 -2995340 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 4325 146 5 44 chr13 116749558 116750103 -2994795 + L1MA4 LINE L1 5785 6295 -5 273 321 0 0 chr13 116750115 116750227 -2994671 + L1M4 LINE L1 2892 3003 -3143 1876 247 36 14 chr13 116750268 116750774 -2994124 - LTR40a LTR ERVL 0 519 3 704 260 73 53 chr13 116750818 116751118 -2993780 + L1MC5 LINE L1 6923 7228 -733 1632 247 27 16 chr13 116751307 116751749 -2993149 + MLT1C LTR MaLR 1 447 -20 468 251 31 62 chr13 116751750 116751945 -2992953 + LTR16C LTR ERVL 286 474 -17 297 73 24 0 chr13 116752061 116752102 -2992796 - MLT2C1 LTR ERVL 0 397 356 905 248 156 23 chr13 116752154 116752461 -2992437 - MLT2C1 LTR ERVL -49 348 1 432 236 39 7 chr13 116752780 116752917 -2991981 + LTR16C LTR ERVL 322 489 -2 216 0 0 0 chr13 116754859 116754883 -2990015 + (CCCGG)n Simple_repeat Simple_repeat 3 26 0 26 50 0 0 chr13 116755237 116755277 -2989621 + GC_rich Low_complexity Low_complexity 1 40 0 316 263 11 0 chr13 116755292 116755387 -2989511 + C-rich Low_complexity Low_complexity 3 98 0 40 21 0 0 chr13 116755415 116755462 -2989436 + GC_rich Low_complexity Low_complexity 1 47 0 30 27 0 0 chr13 116755496 116755533 -2989365 + GC_rich Low_complexity Low_complexity 1 37 0 195 69 0 0 chr13 116755656 116755685 -2989213 + (CGG)n Simple_repeat Simple_repeat 2 30 0 38 39 0 0 chr13 116755919 116755971 -2988927 + GC_rich Low_complexity Low_complexity 1 52 0 203 248 9 48 chr13 116756033 116756138 -2988760 + G-rich Low_complexity Low_complexity 3 103 0 205 95 0 71 chr13 116756094 116756136 -2988762 + (AGGGGG)n Simple_repeat Simple_repeat 2 40 0 4231 144 54 10 chr13 116756249 116757459 -2987439 - L1M2 LINE L1 -498 5793 4542 519 171 23 0 chr13 116757477 116757565 -2987333 + THE1C LTR MaLR 1 90 -285 283 135 19 39 chr13 116757570 116757622 -2987276 - THE1C LTR MaLR -313 62 12 * 343 248 0 13 chr13 116757596 116757683 -2987215 + AluJb SINE Alu 74 150 -152 * 1626 145 48 24 chr13 116757681 116757970 -2986928 + THE1C LTR MaLR 77 372 -3 853 176 94 6 chr13 116757979 116758149 -2986749 + MER46A DNA MER2_type 24 208 -28 370 323 47 0 chr13 116758433 116758560 -2986338 + MIR SINE MIR 130 262 0 543 290 144 35 chr13 116758644 116759151 -2985747 - L1ME4a LINE L1 -49 6072 5511 1169 203 63 20 chr13 116760450 116760538 -2984360 - MER33 DNA MER1_type -2261 324 241 1514 164 113 18 chr13 116760538 116760837 -2984061 - AluJo SINE Alu 0 302 1 1169 203 63 20 chr13 116760837 116761049 -2983849 - MER33 DNA MER1_type -2344 241 11 304 324 120 28 chr13 116761111 116761327 -2983571 - MIR SINE MIR -7 255 20 605 237 122 0 chr13 116761450 116761606 -2983292 + MER45A DNA AcHobo 1 175 -3 218 237 34 0 chr13 116762155 116762214 -2982684 + L3 LINE CR1 1513 1573 -4 204 345 126 11 chr13 116763008 116763182 -2981716 + L2 LINE L2 2481 2674 -640 1367 264 138 12 chr13 116763270 116763841 -2981057 - L2 LINE L2 -452 2862 2220 190 304 0 0 chr13 116766108 116766164 -2978734 - MIR SINE MIR -32 230 175 2362 114 87 8 chr13 116766237 116766604 -2978294 - MSTA LTR MaLR 0 428 33 504 330 84 15 chr13 116766755 116767016 -2977882 - L2 LINE L2 -12 3301 3023 249 186 0 0 chr13 116767020 116767063 -2977835 - L2 LINE L2 -248 3065 3023 1886 151 0 3 chr13 116767107 116767399 -2977499 - AluSx SINE Alu -20 292 2 1732 156 85 12 chr13 116768732 116769072 -2975826 + MLT1A1 LTR MaLR 1 365 0 456 250 81 38 chr13 116769712 116769872 -2975026 - MER58B DNA MER1_type 0 341 175 297 152 0 0 chr13 116769915 116769961 -2974937 + Tigger4(Zombi) DNA MER2_type 1 46 -2685 * 458 115 0 0 chr13 116769937 116769998 -2974900 + Tigger4(Zombi) DNA MER2_type 2671 2731 0 203 222 48 0 chr13 116772463 116772526 -2972372 - L2 LINE L2 -296 2976 2911 336 243 88 29 chr13 116772632 116772753 -2972145 - MIR SINE MIR -43 219 88 2269 123 21 16 chr13 116772753 116773126 -2971772 - THE1C LTR MaLR 0 375 1 336 243 88 29 chr13 116773126 116773140 -2971758 - MIR SINE MIR -174 88 76 270 221 176 46 chr13 116773184 116773315 -2971583 - L2 LINE L2 -515 2799 2652 2154 93 3 3 chr13 116773759 116774059 -2970839 - AluSx SINE Alu -12 300 1 312 315 114 7 chr13 116774084 116774233 -2970665 - MIR SINE MIR -22 240 76 186 316 18 0 chr13 116775566 116775623 -2969275 - MER5B DNA MER1_type -45 133 76 1972 131 0 16 chr13 116776081 116776386 -2968512 - AluSx SINE Alu -12 300 1 1231 275 118 48 chr13 116776430 116777091 -2967807 - L1MC4 LINE L1 -168 7874 7168 354 261 0 11 chr13 116777593 116777685 -2967213 - MIR SINE MIR -125 137 47 259 194 48 0 chr13 116778152 116778214 -2966684 - MER112 DNA MER1_type -187 73 9 1832 139 61 15 chr13 116779783 116780113 -2964785 + MER47A DNA MER2_type 22 366 0 1426 211 62 36 chr13 116780934 116780994 -2963904 - L1MDa LINE L1 -6117 423 366 1754 152 83 9 chr13 116780994 116781343 -2963555 + THE1C LTR MaLR 1 375 0 1426 211 62 36 chr13 116781343 116781670 -2963228 - L1MDa LINE L1 -6174 366 26 396 0 0 0 chr13 116782962 116783006 -2961892 + (TG)n Simple_repeat Simple_repeat 2 45 0 387 242 30 0 chr13 116784461 116784560 -2960338 + MLT1K LTR MaLR 480 581 -7 821 235 97 52 chr13 116784916 116785408 -2959490 + MLT1F1 LTR MaLR 3 559 -8 457 339 34 17 chr13 116785925 116786161 -2958737 - MLT1I LTR MaLR -17 392 153 5494 59 133 1 chr13 116786214 116786942 -2957956 - LTR12 LTR ERV1 -2 824 1 15953 78 15 10 chr13 116786942 116789100 -2955798 - HERV9 LTR ERV1 0 8399 6231 46936 83 12 16 chr13 116789242 116795560 -2949338 - HERV9 LTR ERV1 -2068 6331 40 6077 55 69 13 chr13 116795573 116796355 -2948543 - LTR12 LTR ERV1 0 826 1 280 330 0 9 chr13 116797729 116797838 -2947060 - MIR3 SINE MIR -8 200 93 2744 32 0 3 chr13 116803920 116804232 -2940666 + AluY SINE Alu 1 311 0 1525 207 3 0 chr13 116804418 116804708 -2940190 - AluJo SINE Alu -21 291 1 2303 92 3 0 chr13 116805288 116805580 -2939318 - AluSp SINE Alu -20 293 1 449 300 33 11 chr13 116806126 116806306 -2938592 - Charlie8 DNA MER1_type -2197 220 37 367 258 126 19 chr13 116810008 116810167 -2934731 + MER104 DNA MER2_type 1 176 -4 202 289 84 12 chr13 116810167 116810250 -2934648 - MIR SINE MIR -77 131 43 361 206 50 113 chr13 116810590 116810731 -2934167 - L1ME3A LINE L1 -9 6161 6030 657 182 23 8 chr13 116812319 116812451 -2932447 - L1MA3 LINE L1 -1 6304 6171 392 157 37 46 chr13 116812457 116812565 -2932333 - L1M1 LINE L1 -7440 125 19 760 266 108 29 chr13 116812769 116813258 -2931640 - HAL1 LINE L1 -353 2154 1627 793 169 66 70 chr13 116813264 116813506 -2931392 - L1MDa LINE L1 -4818 1722 1482 266 298 113 78 chr13 116814174 116814556 -2930342 + L1ME LINE L1 5410 5804 -317 3066 180 77 10 chr13 116816251 116816923 -2927975 - L1MB3 LINE L1 -20 6163 5447 244 141 14 42 chr13 116818244 116818315 -2926583 + (TA)n Simple_repeat Simple_repeat 2 70 0 435 58 0 0 chr13 116818318 116818370 -2926528 + MLT2A1 LTR ERVL 338 389 -55 975 122 2 5 chr13 116818371 116818923 -2925975 + (TA)n Simple_repeat Simple_repeat 1 550 0 225 196 0 0 chr13 116819058 116819104 -2925794 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 2629 80 23 6 chr13 116819104 116819453 -2925445 - MLT2A1 LTR ERVL -89 355 1 2205 96 33 7 chr13 116819679 116819981 -2924917 - AluSq SINE Alu -3 310 1 1518 166 39 50 chr13 116820091 116820429 -2924469 + MER44D DNA MER2_type 1 604 -5 2356 95 0 0 chr13 116821111 116821406 -2923492 - AluSg SINE Alu -14 296 2 5206 140 78 11 chr13 116822731 116823638 -2921260 + Tigger1 DNA MER2_type 3 970 -1448 * 7666 149 43 5 chr13 116823634 116824929 -2919969 + Tigger1 DNA MER2_type 1074 2418 0 443 304 10 20 chr13 116825399 116825603 -2919295 + L1MC5 LINE L1 7478 7679 -282 375 331 131 41 chr13 116826499 116827012 -2917886 - L1MEd LINE L1 -4974 1145 587 31 26 0 0 chr13 116831448 116831486 -2913412 + AT_rich Low_complexity Low_complexity 1 38 0 261 302 47 16 chr13 116831887 116832016 -2912882 - L2 LINE L2 -3 3310 3178 237 286 165 0 chr13 116833100 116833191 -2911707 - MIR SINE MIR -61 147 42 1257 199 73 51 chr13 116833690 116834046 -2910852 - L1M4b LINE L1 -5281 1578 1215 194 133 0 44 chr13 116834046 116834091 -2910807 + (TTTTTA)n Simple_repeat Simple_repeat 2 44 0 1733 163 7 3 chr13 116834182 116834465 -2910433 + AluJo SINE Alu 14 297 -15 379 315 14 68 chr13 116834904 116835126 -2909772 + L1ME LINE L1 5536 5745 -376 186 171 29 0 chr13 116835782 116835817 -2909081 + MIR SINE MIR 110 145 -63 1748 103 87 98 chr13 116836348 116836727 -2908171 - THE1C LTR MaLR 0 375 1 1008 263 17 44 chr13 116840530 116840891 -2904007 - L1ME3 LINE L1 0 6162 5812 9263 89 39 1 chr13 116842033 116843273 -2901625 - HSMAR1 DNA Mariner 0 1287 1 2343 97 0 7 chr13 116844569 116844869 -2900029 - AluSx SINE Alu -14 298 1 777 265 42 9 chr13 116844967 116845182 -2899716 + MER58A DNA MER1_type 1 222 -2 681 282 118 31 chr13 116845262 116846471 -2898427 - L1MEc LINE L1 -4443 1637 295 681 248 167 48 chr13 116846601 116846997 -2897901 - LTR34 LTR ERV1 0 699 257 351 239 55 9 chr13 116847156 116847265 -2897633 - MER4C LTR ERV1 -349 116 3 262 321 24 0 chr13 116847269 116847353 -2897545 - L1MEc LINE L1 -5952 118 33 209 254 45 15 chr13 116847669 116847736 -2897162 - L2 LINE L2 -87 3226 3158 1518 233 84 93 chr13 116847942 116848547 -2896351 - MER21B LTR ERV1 -211 652 53 222 289 110 34 chr13 116848603 116848866 -2896032 - L2 LINE L2 -431 2883 2601 543 278 155 5 chr13 116849953 116850140 -2894758 - MIR SINE MIR -7 255 41 188 322 67 11 chr13 116852690 116852780 -2892118 + MIR SINE MIR 96 190 -72 20466 143 49 59 chr13 116854799 116859635 -2885263 + L1M1 LINE L1 5 4810 -2755 237 65 0 0 chr13 116859696 116859727 -2885171 + (TG)n Simple_repeat Simple_repeat 2 32 0 663 239 46 25 chr13 116861511 116861708 -2883190 + MER3 DNA MER1_type 1 201 -8 1250 103 0 0 chr13 116862274 116862448 -2882450 + AluSp SINE Alu 136 309 -4 685 231 53 15 chr13 116862935 116863246 -2881652 + MLT1A1 LTR MaLR 1 364 -1 357 307 155 22 chr13 116863484 116863852 -2881046 - HAL1 LINE L1 -930 1577 1161 333 359 32 13 chr13 116864376 116864532 -2880366 - HAL1 LINE L1 -2346 161 3 23 97 0 0 chr13 116865731 116865803 -2879095 + AT_rich Low_complexity Low_complexity 1 72 0 218 333 137 22 chr13 116866041 116866224 -2878674 + MIR SINE MIR 49 252 -10 29 0 0 0 chr13 116866247 116866276 -2878622 + AT_rich Low_complexity Low_complexity 1 29 0 237 103 0 26 chr13 116871849 116871888 -2873010 - MER58 DNA MER1_type -135 206 169 23 0 0 0 chr13 116872354 116872377 -2872521 + AT_rich Low_complexity Low_complexity 1 23 0 263 237 43 75 chr13 116874029 116874122 -2870776 + MER103 DNA DNA 56 145 -21 21 0 0 0 chr13 116875072 116875093 -2869805 + AT_rich Low_complexity Low_complexity 1 21 0 355 282 46 15 chr13 116876484 116876615 -2868283 + MER103 DNA DNA 30 164 -2 245 274 83 0 chr13 116876728 116876812 -2868086 - MER20 DNA MER1_type -58 161 71 252 0 0 0 chr13 116878569 116878597 -2866301 + (T)n Simple_repeat Simple_repeat 1 28 0 415 247 113 43 chr13 116880099 116880285 -2864613 - MER58A DNA MER1_type 0 224 26 868 209 76 36 chr13 116882606 116882831 -2862067 - L1PA16 LINE L1 -5 6161 5928 21 36 0 0 chr13 116883492 116883520 -2861378 + AT_rich Low_complexity Low_complexity 1 28 0 212 303 0 45 chr13 116884299 116884388 -2860510 + L2 LINE L2 3187 3271 -1 278 253 301 24 chr13 116885036 116885325 -2859573 - L2 LINE L2 -50 3263 2895 22 70 0 0 chr13 116885734 116885777 -2859121 + AT_rich Low_complexity Low_complexity 1 43 0 2127 103 0 7 chr13 116886616 116886917 -2857981 - AluSx SINE Alu -13 299 1 1205 188 91 46 chr13 116887797 116888126 -2856772 - MER2 DNA MER2_type 0 344 1 24 0 0 0 chr13 116891012 116891036 -2853862 + AT_rich Low_complexity Low_complexity 1 24 0 1627 251 81 17 chr13 116895676 116896206 -2848692 - L1MD2 LINE L1 -240 6119 5556 381 257 10 0 chr13 116896202 116896303 -2848595 - L1MDa LINE L1 -4249 2291 2190 * 825 185 0 0 chr13 116896314 116896444 -2848454 - FLAM_C SINE Alu -1 132 3 6156 205 47 11 chr13 116896446 116896758 -2848140 - L1 LINE L1 -2305 5260 4961 1727 176 0 3 chr13 116896758 116897053 -2847845 + AluJb SINE Alu 1 294 -18 6156 205 47 11 chr13 116897053 116898905 -2845993 - L1 LINE L1 -2604 4961 3046 3914 230 54 33 chr13 116898926 116900320 -2844578 + L1ME1 LINE L1 3934 5298 -868 2318 106 0 0 chr13 116900320 116900623 -2844275 + AluY SINE Alu 1 303 -8 3914 230 54 33 chr13 116900623 116900861 -2844037 + L1ME1 LINE L1 5298 5530 -636 2281 97 0 0 chr13 116900861 116901165 -2843733 + AluSc SINE Alu 1 304 0 3914 230 54 33 chr13 116901165 116901718 -2843180 + L1ME1 LINE L1 5530 6161 -5 522 334 67 32 chr13 116901731 116901802 -2843096 + HERVL LTR ERVL 2266 2333 -3321 1474 151 172 55 chr13 116901802 116902185 -2842713 + MSTA LTR MaLR 1 428 0 522 334 67 32 chr13 116902185 116902454 -2842444 + HERVL LTR ERVL 2333 2618 -3036 441 204 34 0 chr13 116902483 116902571 -2842327 - MER94 DNA DNA -43 91 1 446 296 39 22 chr13 116902894 116903073 -2841825 + HERVL LTR ERVL 3774 3955 -1809 2176 162 24 24 chr13 116903077 116903503 -2841395 - MSTB LTR MaLR 0 426 1 1015 316 86 2 chr13 116903545 116903940 -2840958 + HERVL LTR ERVL 4031 4458 -1306 2213 110 30 0 chr13 116905018 116905357 -2839541 - AluSx SINE Alu 0 348 1 620 308 37 0 chr13 116905387 116905601 -2839297 + MER58A DNA MER1_type 3 224 0 961 187 16 16 chr13 116908033 116908215 -2836683 - AluJb SINE Alu -15 297 116 265 282 169 14 chr13 116908454 116908596 -2836302 + MIR3 SINE MIR 35 198 -10 1324 202 30 81 chr13 116911203 116911609 -2833289 - MLT1B LTR MaLR 0 390 6 1077 259 186 20 chr13 116912095 116912546 -2832352 + MLT1F LTR MaLR 6 531 -11 6597 216 52 22 chr13 116914566 116915786 -2829112 + L1MB7 LINE L1 1 1314 -5332 1557 144 101 45 chr13 116915786 116916141 -2828757 + THE1C LTR MaLR 1 375 0 6597 216 52 22 chr13 116916141 116916925 -2827973 + L1MB7 LINE L1 1314 2073 -4573 6119 182 37 24 chr13 116916926 116919148 -2825750 + L1MB7 LINE L1 4398 6646 -36 1542 196 104 77 chr13 116919563 116920151 -2824747 + LTR38B LTR ERV1 2 602 -9 197 214 57 14 chr13 116923793 116923863 -2821035 - MIR SINE MIR -167 95 23 2208 101 20 13 chr13 116927952 116928258 -2816640 - AluSx SINE Alu 0 312 5 187 128 128 0 chr13 116929601 116929648 -2815250 - L2 LINE L2 -58 3255 3203 319 345 132 0 chr13 116929864 116930038 -2814860 - L2 LINE L2 -481 2833 2637 746 203 0 0 chr13 116930122 116930265 -2814633 + AluJb SINE Alu 142 284 -28 1088 251 14 1 chr13 116930438 116930717 -2814181 - L1MB8 LINE L1 -319 5859 5615 1607 202 23 6 chr13 116930730 116931077 -2813821 + MLT1A1 LTR MaLR 13 365 0 471 192 2 0 chr13 116931077 116931173 -2813725 - L1MB8 LINE L1 -566 5618 5521 638 214 133 0 chr13 116931834 116932030 -2812868 + MLT1C LTR MaLR 8 229 -238 1657 123 105 37 chr13 116932802 116933153 -2811745 + THE1C LTR MaLR 1 375 0 1250 235 134 0 chr13 116933753 116934157 -2810741 + MLT1C LTR MaLR 1 458 -9 2629 56 0 0 chr13 116935853 116936159 -2808739 - AluY SINE Alu -5 306 1 2421 81 0 3 chr13 116937471 116937766 -2807132 - AluSx SINE Alu -18 294 1 2146 135 3 0 chr13 116938128 116938424 -2806474 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr13 116939941 116939962 -2804936 + AT_rich Low_complexity Low_complexity 1 21 0 264 281 117 8 chr13 116943463 116943591 -2801307 - L1MC/D LINE L1 -1985 5823 5682 200 220 46 101 chr13 116945050 116945159 -2799739 + MER5B DNA MER1_type 40 142 -36 260 245 63 56 chr13 116945942 116946085 -2798813 + L1ME1 LINE L1 3878 4021 -2125 381 290 195 0 chr13 116946137 116946475 -2798423 + L1ME1 LINE L1 4135 4538 -1608 387 281 127 47 chr13 116948258 116948406 -2796492 + L1ME1 LINE L1 4875 5010 -1154 1465 173 100 19 chr13 116948406 116948677 -2796221 + AluSx SINE Alu 1 293 -19 387 281 127 47 chr13 116948677 116949172 -2795726 + L1ME1 LINE L1 5010 5585 -579 653 237 71 50 chr13 116949270 116949629 -2795269 - MLT1E3 LTR MaLR -78 546 120 317 349 47 0 chr13 116950203 116950309 -2794589 + L1ME1 LINE L1 5840 5950 -216 2346 100 0 0 chr13 116951066 116951365 -2793533 - AluSx SINE Alu -13 299 1 341 243 284 12 chr13 116951623 116951792 -2793106 - L1M4 LINE L1 -5453 1089 875 285 309 86 14 chr13 116953327 116953466 -2791432 + L2 LINE L2 3159 3307 -6 2302 108 3 7 chr13 116954736 116955041 -2789857 - AluSx SINE Alu -8 304 1 294 200 71 59 chr13 116955061 116955146 -2789752 + MER82 DNA MER2_type 524 609 -44 1421 215 49 30 chr13 116955152 116955519 -2789379 + MLT1A2 LTR MaLR 1 374 0 353 284 123 13 chr13 116955957 116956112 -2788786 + MER21B LTR ERV1 409 580 -283 1020 247 100 35 chr13 116957667 116958129 -2786769 + MLT1D LTR MaLR 10 501 -4 469 304 189 3 chr13 116958329 116958711 -2786187 - L2 LINE L2 -2058 1256 804 394 293 57 14 chr13 116958885 116959025 -2785873 - MIR SINE MIR -66 196 51 609 256 32 0 chr13 116959613 116959769 -2785129 + MER58A DNA MER1_type 28 188 -36 475 294 123 18 chr13 116959772 116960048 -2784850 + MER115 DNA AcHobo 35 339 -354 1533 267 15 6 chr13 116960270 116960749 -2784149 + L1ME4a LINE L1 4866 5348 -798 473 206 34 57 chr13 116960780 116960805 -2784093 + L1MB8 LINE L1 6005 6029 -149 429 20 0 0 chr13 116960805 116960855 -2784043 + (TA)n Simple_repeat Simple_repeat 2 51 0 2203 110 10 0 chr13 116960855 116961147 -2783751 - AluSx SINE Alu -17 295 1 473 206 34 57 chr13 116961147 116961295 -2783603 + L1MB8 LINE L1 6027 6175 -3 265 331 99 15 chr13 116961303 116961545 -2783353 + MLT1G1 LTR MaLR 1 224 -331 416 271 34 0 chr13 116961707 116961825 -2783073 + MLT1G1 LTR MaLR 468 589 -6 583 260 146 41 chr13 116962678 116963047 -2781851 + L1ME4a LINE L1 5679 6086 -35 547 55 0 0 chr13 116963740 116963813 -2781085 - L1P1 LINE L1 -704 5451 5379 587 53 0 0 chr13 116963813 116963882 -2781016 + L1PA3 LINE L1 6080 6155 0 216 0 0 0 chr13 116964098 116964122 -2780776 + (A)n Simple_repeat Simple_repeat 1 24 0 581 188 39 39 chr13 116965024 116965139 -2779759 - L1MC4 LINE L1 -149 7893 7776 2480 116 6 3 chr13 116965139 116965493 -2779405 - THE1A LTR MaLR 0 355 1 581 188 39 39 chr13 116965493 116965531 -2779367 - L1MC4 LINE L1 -265 7777 7740 1824 194 90 27 chr13 116965540 116965875 -2779023 + MSTC LTR MaLR 1 366 -62 2340 89 7 3 chr13 116965875 116966167 -2778731 + AluSg SINE Alu 1 293 -17 1824 194 90 27 chr13 116966167 116966232 -2778666 + MSTC LTR MaLR 366 426 -2 282 198 37 12 chr13 116966493 116966574 -2778324 - L1MC4 LINE L1 -480 7562 7480 526 294 85 0 chr13 116966763 116966964 -2777934 - L1MC4 LINE L1 -1024 7018 6801 186 189 0 0 chr13 116967230 116967267 -2777631 + T-rich Low_complexity Low_complexity 1 37 0 266 0 0 29 chr13 116967632 116967667 -2777231 + (TG)n Simple_repeat Simple_repeat 1 34 0 345 314 112 0 chr13 116968344 116968513 -2776385 - MIR SINE MIR -54 208 21 186 103 0 0 chr13 116968668 116968697 -2776201 + (TCTCTG)n Simple_repeat Simple_repeat 4 32 0 324 0 0 0 chr13 116968708 116968744 -2776154 + (CA)n Simple_repeat Simple_repeat 2 37 0 2063 146 125 10 chr13 116968849 116969233 -2775665 + MSTA LTR MaLR 1 428 0 411 289 116 24 chr13 116969702 116969996 -2774902 - L1MC4 LINE L1 -378 7664 7344 3271 284 97 56 chr13 116970003 116973741 -2771157 - L1MC4a LINE L1 -612 7196 3278 2161 142 0 0 chr13 116973741 116974043 -2770855 - AluSx SINE Alu -8 304 3 3271 284 97 56 chr13 116974043 116974399 -2770499 - L1MC4a LINE L1 -4530 3278 2938 332 281 93 80 chr13 116974422 116974735 -2770163 - L1 LINE L1 -2665 3481 3165 2081 144 0 22 chr13 116974982 116975294 -2769604 - AluSx SINE Alu -7 305 1 3320 219 103 96 chr13 116975443 116976037 -2768861 - L1MD3 LINE L1 -11 7984 7396 361 212 71 18 chr13 116976037 116976150 -2768748 - MLT1F1 LTR MaLR -443 124 6 3320 219 103 96 chr13 116976150 116976735 -2768163 - L1MD3 LINE L1 -599 7396 6684 261 109 0 0 chr13 116976993 116977039 -2767859 + (T)n Simple_repeat Simple_repeat 1 46 0 182 184 20 82 chr13 116977671 116977720 -2767178 + L2 LINE L2 3268 3313 0 715 328 90 40 chr13 116980105 116980504 -2764394 - HAL1 LINE L1 -1246 1261 843 444 306 70 59 chr13 116980789 116981161 -2763737 - HAL1 LINE L1 -2041 466 91 375 291 0 0 chr13 116981406 116981665 -2763233 + (TG)n Simple_repeat Simple_repeat 1 259 0 455 253 6 0 chr13 116981708 116981878 -2763020 + (TG)n Simple_repeat Simple_repeat 2 172 0 239 296 50 40 chr13 116982879 116983078 -2761820 + L1ME4a LINE L1 5764 5964 -157 233 160 0 20 chr13 116983079 116983129 -2761769 + (TA)n Simple_repeat Simple_repeat 1 49 0 362 221 81 60 chr13 116983138 116983287 -2761611 + L1MC4 LINE L1 6552 6703 -1339 359 327 18 9 chr13 116983311 116983421 -2761477 + L1MC4 LINE L1 6593 6703 -1339 358 265 151 96 chr13 116983392 116983423 -2761475 + L1ME4a LINE L1 5935 5963 -158 * 2098 187 9 42 chr13 116983423 116983851 -2761047 - MLT2D LTR ERVL 0 414 1 358 265 151 96 chr13 116983851 116983985 -2760913 + L1ME4a LINE L1 5963 6109 -12 240 311 9 19 chr13 116984168 116984274 -2760624 + MIR SINE MIR 33 137 -71 281 307 32 71 chr13 116984370 116984650 -2760248 + MER20B DNA MER1_type 113 381 -402 268 273 142 17 chr13 116984771 116984947 -2759951 + MER20B DNA MER1_type 562 759 -24 409 328 0 17 chr13 116985804 116985984 -2758914 + (TG)n Simple_repeat Simple_repeat 1 177 0 199 173 39 0 chr13 116986574 116986626 -2758272 + (CA)n Simple_repeat Simple_repeat 1 54 0 222 286 29 0 chr13 116986684 116986754 -2758144 + (CA)n Simple_repeat Simple_repeat 1 72 0 295 270 178 11 chr13 116988070 116988244 -2756654 + MLT1I LTR MaLR 207 409 0 2373 201 142 25 chr13 116988294 116988947 -2755951 - MER44D DNA MER2_type 0 605 4 2557 66 3 0 chr13 116989071 116989372 -2755526 + AluSq SINE Alu 1 302 -11 357 75 0 0 chr13 116989554 116989607 -2755291 - MADE1 DNA Mariner 0 80 28 2174 106 7 0 chr13 116990936 116991219 -2753679 + AluSg SINE Alu 1 285 -25 2259 230 73 14 chr13 116991284 116991981 -2752917 + L1MC1 LINE L1 5596 6333 0 2440 112 34 17 chr13 116992283 116992641 -2752257 + THE1B LTR MaLR 1 364 0 659 239 105 5 chr13 116993361 116993570 -2751328 + MLT1C LTR MaLR 35 264 -203 2072 146 7 0 chr13 116995010 116995311 -2749587 - AluSx SINE Alu -9 303 1 217 313 184 0 chr13 116996699 116996846 -2748052 - MIR SINE MIR -81 181 8 380 317 134 6 chr13 117000604 117000768 -2744130 + MIR SINE MIR 49 233 -29 419 238 48 0 chr13 117001204 117001288 -2743610 + MER21B LTR ERV1 2 89 -774 2133 145 0 7 chr13 117001296 117001606 -2743292 - AluSx SINE Alu -4 308 1 560 248 115 67 chr13 117001756 117002026 -2742872 + MER21B LTR ERV1 185 467 -396 864 204 53 36 chr13 117002226 117002451 -2742447 + MER21B LTR ERV1 511 739 -124 274 118 11 43 chr13 117004475 117004568 -2740330 + (CCCCCA)n Simple_repeat Simple_repeat 6 95 0 214 281 0 0 chr13 117004576 117004640 -2740258 + C-rich Low_complexity Low_complexity 1 64 0 5089 153 26 16 chr13 117005391 117006540 -2738358 + L1PA16 LINE L1 5007 6166 0 206 319 135 31 chr13 117007450 117007613 -2737285 - MIR3 SINE MIR -12 196 17 394 285 14 35 chr13 117008423 117008859 -2736039 + GA-rich Low_complexity Low_complexity 1 426 0 1172 219 82 31 chr13 117009406 117009762 -2735136 - MLT1A2 LTR MaLR 0 374 1 2037 212 93 40 chr13 117009768 117009873 -2735025 - MER82 DNA MER2_type -44 609 511 2285 109 3 7 chr13 117009873 117010175 -2734723 + AluSx SINE Alu 1 301 -11 2037 212 93 40 chr13 117010175 117010626 -2734272 - MER82 DNA MER2_type -142 511 23 278 290 9 36 chr13 117012054 117012391 -2732507 + CT-rich Low_complexity Low_complexity 1 328 0 355 260 23 40 chr13 117012427 117012604 -2732294 + CT-rich Low_complexity Low_complexity 2 175 0 261 57 0 0 chr13 117016490 117016525 -2728373 + (A)n Simple_repeat Simple_repeat 1 35 0 296 350 69 45 chr13 117017422 117017713 -2727185 - MER115 DNA AcHobo -9 684 387 315 333 106 4 chr13 117017722 117017959 -2726939 - MER115 DNA AcHobo -427 266 6 193 348 141 7 chr13 117018256 117018391 -2726507 + MIR SINE MIR 22 174 -88 25 0 0 0 chr13 117021437 117021462 -2723436 + GC_rich Low_complexity Low_complexity 1 25 0 278 279 0 48 chr13 117021668 117021772 -2723126 + C-rich Low_complexity Low_complexity 1 99 0 203 404 34 0 chr13 117023767 117023913 -2720985 - MIR SINE MIR -54 208 58 1523 260 138 32 chr13 117025643 117026232 -2718666 - MER82 DNA MER2_type -2 651 1 2420 74 3 0 chr13 117026336 117026632 -2718266 + AluY SINE Alu 1 297 -14 744 256 10 0 chr13 117026789 117026992 -2717906 + MER3 DNA MER1_type 2 206 -3 312 283 155 36 chr13 117029345 117029483 -2715415 - L1MC4 LINE L1 0 8042 7922 306 0 0 0 chr13 117029483 117029517 -2715381 + (CA)n Simple_repeat Simple_repeat 2 35 0 312 283 155 36 chr13 117029517 117029629 -2715269 - L1MC4 LINE L1 -120 7922 7762 342 305 146 0 chr13 117029652 117029816 -2715082 + MER5A DNA MER1_type 1 188 -1 462 270 45 42 chr13 117029846 117030479 -2714419 - L1MC3 LINE L1 -200 7673 7063 2003 122 49 3 chr13 117030479 117030766 -2714132 - AluSx SINE Alu -12 300 1 462 270 45 42 chr13 117030766 117030867 -2714031 - L1MC3 LINE L1 -810 7063 6964 221 276 203 37 chr13 117031210 117031373 -2713525 + L2 LINE L2 2305 2494 -820 265 309 86 14 chr13 117032872 117033011 -2711887 + L2 LINE L2 3159 3307 -6 187 345 46 59 chr13 117034202 117034282 -2710616 + L2 LINE L2 2003 2083 -1231 2248 116 7 0 chr13 117034282 117034584 -2710314 - AluY SINE Alu -7 304 1 187 345 46 59 chr13 117034584 117034891 -2710007 + L2 LINE L2 2083 2385 -929 270 291 0 23 chr13 117035445 117035531 -2709367 + MIR SINE MIR 71 154 -108 265 326 22 0 chr13 117035796 117035885 -2709013 - MIR SINE MIR -30 232 142 185 313 64 76 chr13 117035911 117036160 -2708738 - L2 LINE L2 -223 3049 2804 205 300 0 0 chr13 117036250 117036300 -2708598 + (TGGG)n Simple_repeat Simple_repeat 3 52 0 714 187 6 16 chr13 117036302 117036484 -2708414 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 712 176 0 22 chr13 117036537 117036719 -2708179 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 777 208 0 0 chr13 117036761 117036939 -2707959 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 744 229 3 0 chr13 117036978 117037307 -2707591 + (TGGA)n Simple_repeat Simple_repeat 1 330 0 318 324 92 10 chr13 117037318 117037525 -2707373 - L2 LINE L2 -636 2678 2455 238 388 0 0 chr13 117039306 117039409 -2705489 - MIR SINE MIR -102 160 58 259 288 103 0 chr13 117040086 117040232 -2704666 + MLT1F1 LTR MaLR 400 560 -7 243 284 53 0 chr13 117042402 117042497 -2702401 + L2 LINE L2 2303 2402 -912 398 270 0 0 chr13 117042502 117042654 -2702244 + C-rich Low_complexity Low_complexity 1 152 0 1281 280 83 33 chr13 117042661 117043314 -2701584 + L2 LINE L2 2358 3037 -276 452 287 17 119 chr13 117043422 117043537 -2701361 + L2 LINE L2 2969 3094 -219 2348 86 3 7 chr13 117043537 117043828 -2701070 + AluSx SINE Alu 11 300 -12 452 287 17 119 chr13 117043828 117044074 -2700824 + L2 LINE L2 3094 3293 -20 1102 254 22 11 chr13 117044273 117044545 -2700353 - MLT1C LTR MaLR -1 466 192 845 175 35 53 chr13 117044715 117044943 -2699955 - L1MC4 LINE L1 -501 7541 7318 297 0 0 0 chr13 117045280 117045313 -2699585 + (TG)n Simple_repeat Simple_repeat 1 33 0 4067 155 53 17 chr13 117045664 117046439 -2698459 - L1MB3 LINE L1 -1 6182 5380 306 386 58 17 chr13 117047371 117047612 -2697286 + MIR SINE MIR 4 254 -8 300 352 25 31 chr13 117047792 117047954 -2696944 - L1M4 LINE L1 -1856 4290 4130 235 262 0 0 chr13 117048941 117049002 -2695896 - HAL1 LINE L1 -1042 1465 1405 343 238 38 0 chr13 117049032 117049112 -2695786 - HAL1 LINE L1 -1184 1323 1241 482 187 158 113 chr13 117049327 117049530 -2695368 + MER20 DNA MER1_type 5 216 -3 184 343 73 70 chr13 117049837 117050234 -2694664 - L2 LINE L2 -49 3223 2826 856 181 25 0 chr13 117050288 117050448 -2694450 + MLT2D LTR ERVL 19 182 -232 225 232 43 14 chr13 117050637 117050706 -2694192 - MIR SINE MIR -56 152 82 251 54 27 0 chr13 117052626 117052663 -2692235 + (CA)n Simple_repeat Simple_repeat 1 38 0 210 283 67 0 chr13 117053520 117053580 -2691318 - L2 LINE L2 -4 3268 3205 349 309 40 32 chr13 117053803 117053929 -2690969 + L3 LINE CR1 1446 1572 -5 1658 158 155 11 chr13 117054584 117054958 -2689940 + MSTA LTR MaLR 1 428 0 630 250 101 26 chr13 117055431 117055699 -2689199 - L1ME1 LINE L1 -5 6161 5874 3577 241 31 6 chr13 117055709 117056722 -2688176 + L1ME1 LINE L1 4246 5283 -863 433 214 33 132 chr13 117056745 117056884 -2688014 + L1ME1 LINE L1 5578 5696 -470 2186 137 0 3 chr13 117056884 117057184 -2687714 - AluSq SINE Alu -14 299 1 433 214 33 132 chr13 117057184 117057226 -2687672 + L1ME1 LINE L1 5696 5741 -425 2297 171 10 5 chr13 117057232 117057624 -2687274 + MSTB LTR MaLR 33 426 0 1213 235 63 22 chr13 117057626 117057988 -2686910 + L1ME1 LINE L1 5787 6163 -3 193 355 0 0 chr13 117058043 117058105 -2686793 + MIR SINE MIR 187 248 -14 1007 208 77 72 chr13 117060064 117060439 -2684459 + MER74A LTR ERVL 1 377 -181 529 246 12 0 chr13 117061641 117061812 -2683086 + GA-rich Low_complexity Low_complexity 1 173 0 566 194 8 41 chr13 117061825 117062195 -2682703 + GA-rich Low_complexity Low_complexity 1 358 0 2117 113 16 19 chr13 117065190 117065499 -2679399 + AluSg SINE Alu 3 310 0 5192 212 9 13 chr13 117066811 117067623 -2677275 - L1PA16 LINE L1 -10 6156 5342 1789 124 4 40 chr13 117067623 117067897 -2677001 - AluSx SINE Alu 0 312 49 5192 212 9 13 chr13 117067897 117069130 -2675768 - L1PA16 LINE L1 -824 5342 4124 396 0 0 0 chr13 117069973 117070017 -2674881 + (TG)n Simple_repeat Simple_repeat 1 44 0 256 153 68 17 chr13 117071226 117071285 -2673613 + MIR SINE MIR 28 89 -173 1503 108 0 61 chr13 117071316 117071529 -2673369 - AluSg SINE Alu -110 200 1 268 186 17 17 chr13 117072277 117072336 -2672562 - MIR SINE MIR -63 145 87 466 264 16 0 chr13 117072937 117073062 -2671836 + MER105 DNA DNA 71 197 -7 342 345 18 12 chr13 117073595 117073760 -2671138 + MER96 DNA MER1_type? 1 166 -9 2168 127 0 22 chr13 117075681 117075995 -2668903 - AluSx SINE Alu -5 307 1 2441 94 0 0 chr13 117077106 117077413 -2667485 - AluSg SINE Alu -3 307 1 1731 154 154 5 chr13 117078893 117079264 -2665634 + MSTA LTR MaLR 3 428 0 2050 242 20 58 chr13 117080096 117080504 -2664394 + L1MB8 LINE L1 5526 5908 -270 2297 113 3 3 chr13 117080504 117080805 -2664093 + AluSx SINE Alu 1 301 -11 2050 242 20 58 chr13 117080805 117081061 -2663837 + L1MB8 LINE L1 5908 6172 -6 530 293 46 6 chr13 117081126 117081300 -2663598 + L1MEd LINE L1 2 182 -5937 2388 96 3 3 chr13 117083899 117084201 -2660697 - AluSq SINE Alu -11 302 1 498 249 73 6 chr13 117085310 117085475 -2659423 + MLT1C LTR MaLR 289 464 -3 180 183 43 129 chr13 117088726 117088819 -2656079 + MIR SINE MIR 63 147 -61 224 233 17 0 chr13 117088906 117088966 -2655932 - L2 LINE L2 -20 3252 3192 299 360 94 22 chr13 117090257 117090524 -2654374 - L3 LINE CR1 -146 1431 1146 258 307 13 0 chr13 117090601 117090676 -2654222 + MER5A DNA MER1_type 114 189 0 846 200 9 32 chr13 117091936 117091984 -2652914 + L1MA9 LINE L1 6091 6139 -173 2015 123 0 4 chr13 117091984 117092260 -2652638 + AluSx SINE Alu 26 300 -12 846 200 9 32 chr13 117092260 117092431 -2652467 + L1MA9 LINE L1 6139 6305 -7 240 213 0 0 chr13 117093466 117093527 -2651371 + CT-rich Low_complexity Low_complexity 2 62 0 2302 123 0 13 chr13 117093527 117093844 -2651054 - AluSq SINE Alu 0 313 1 2391 108 0 13 chr13 117096022 117096338 -2648560 - AluSx SINE Alu 0 312 1 344 281 25 8 chr13 117096809 117096930 -2647968 - L2 LINE L2 -14 3258 3136 21 0 0 0 chr13 117097390 117097411 -2647487 + AT_rich Low_complexity Low_complexity 1 21 0 1727 235 42 26 chr13 117097416 117097986 -2646912 - L1MC5 LINE L1 -47 7914 7336 625 173 138 6 chr13 117097991 117098147 -2646751 + MER20 DNA MER1_type 5 178 -41 25455 48 2 3 chr13 117098152 117104317 -2640581 - L1PA5 LINE L1 0 6154 1 369 148 16 0 chr13 117104317 117104378 -2640520 + MER20 DNA MER1_type 158 219 0 339 228 81 24 chr13 117104474 117104597 -2640301 - L1MC5 LINE L1 -721 7240 7111 332 366 33 24 chr13 117105035 117105248 -2639650 + MIR SINE MIR 16 230 -32 185 296 99 0 chr13 117105269 117105340 -2639558 + L3 LINE CR1 1497 1574 -3 2457 97 0 0 chr13 117106846 117107156 -2637742 + AluSg SINE Alu 1 310 0 301 360 39 17 chr13 117107228 117107406 -2637492 - MIR SINE MIR -58 204 23 1930 111 3 96 chr13 117107890 117108214 -2636684 + AluSx SINE Alu 3 296 -16 180 0 0 0 chr13 117108214 117108234 -2636664 + (TA)n Simple_repeat Simple_repeat 2 21 0 560 303 0 0 chr13 117109611 117109879 -2635019 + (TGGG)n Simple_repeat Simple_repeat 1 268 0 1682 195 52 52 chr13 117110385 117110867 -2634031 - MER66B LTR ERV1 -1 485 4 4388 108 87 10 chr13 117111118 117111842 -2633056 - LTR17 LTR ERV1 0 780 1 216 204 0 56 chr13 117112578 117112632 -2632266 - L2 LINE L2 0 3313 3263 360 164 33 16 chr13 117113425 117113547 -2631351 + (TG)n Simple_repeat Simple_repeat 1 124 0 576 138 31 6 chr13 117113569 117113728 -2631170 + (TG)n Simple_repeat Simple_repeat 1 163 0 245 162 15 0 chr13 117113741 117113809 -2631089 + (TG)n Simple_repeat Simple_repeat 1 69 0 802 184 0 0 chr13 117115552 117115688 -2629210 - FLAM_C SINE Alu -2 141 6 317 294 52 22 chr13 117116558 117116694 -2628204 + MLT1D LTR MaLR 2 141 -364 445 318 49 34 chr13 117118651 117118915 -2625983 + L1ME3A LINE L1 5609 5876 -294 296 310 10 10 chr13 117118996 117119096 -2625802 + (TG)n Simple_repeat Simple_repeat 2 101 0 321 264 0 0 chr13 117119988 117120098 -2624800 + (CA)n Simple_repeat Simple_repeat 1 110 0 404 267 193 0 chr13 117120860 117120995 -2623903 + MER5A DNA MER1_type 26 186 -3 228 188 104 31 chr13 117123279 117123375 -2621523 - MER20 DNA MER1_type -87 132 30 870 266 148 35 chr13 117123449 117123881 -2621017 + L1MD2 LINE L1 5525 6005 -354 320 179 0 15 chr13 117123907 117123974 -2620924 - MER81 DNA DNA -41 73 8 266 294 47 0 chr13 117123992 117124077 -2620821 + L1MD2 LINE L1 6044 6132 -227 212 269 26 51 chr13 117124473 117124551 -2620347 - MIR SINE MIR -76 186 111 275 23 47 0 chr13 117128986 117129029 -2615869 + L1PA6 LINE L1 6110 6154 0 251 262 0 16 chr13 117133011 117133072 -2611826 + GA-rich Low_complexity Low_complexity 2 61 0 346 288 29 7 chr13 117133483 117133622 -2611276 - MER104 DNA Tc2 -32 148 7 26 0 0 0 chr13 117133778 117133804 -2611094 + AT_rich Low_complexity Low_complexity 1 26 0 205 273 0 0 chr13 117135209 117135253 -2609645 + polypurine Low_complexity Low_complexity 2 45 0 256 269 157 0 chr13 117136321 117136429 -2608469 + MIR SINE MIR 82 206 -56 674 197 0 16 chr13 117136590 117136773 -2608125 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 560 239 0 3 chr13 117136813 117137220 -2607678 + (TCCA)n Simple_repeat Simple_repeat 1 405 0 683 191 0 22 chr13 117137258 117137441 -2607457 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 534 268 0 0 chr13 117137454 117137809 -2607089 + (TCCA)n Simple_repeat Simple_repeat 1 355 0 507 322 24 19 chr13 117137817 117138028 -2606870 - L2 LINE L2 0 3313 3102 1706 238 33 22 chr13 117138190 117138640 -2606258 - MLT1C LTR MaLR -1 466 12 184 275 55 22 chr13 117138829 117138920 -2605978 - L2 LINE L2 -4 3268 3175 182 325 71 26 chr13 117139669 117139753 -2605145 + MIR SINE MIR 42 128 -103 217 373 20 0 chr13 117141395 117141497 -2603401 + MER91A DNA MER1_type 1 104 -92 964 218 153 8 chr13 117144025 117144287 -2600611 + MER7A DNA MER2_type 49 346 0 207 139 0 0 chr13 117144645 117144681 -2600217 + (GGAGAA)n Simple_repeat Simple_repeat 5 40 0 387 327 87 46 chr13 117144687 117145215 -2599683 + HAL1 LINE L1 862 1277 -1230 262 315 22 0 chr13 117145215 117145304 -2599594 + GA-rich Low_complexity Low_complexity 2 92 0 1477 181 32 20 chr13 117146821 117147169 -2597729 - L1PA16 LINE L1 -16 6150 5799 974 222 62 30 chr13 117150058 117150388 -2594510 - Tigger7 DNA MER2_type -1 2490 1 529 302 64 17 chr13 117150477 117150724 -2594174 + MLT1G1 LTR MaLR 244 579 -16 880 213 100 4 chr13 117152119 117152368 -2592530 - ORSL DNA AcHobo -2 273 1 636 284 46 23 chr13 117153096 117153314 -2591584 + MIR SINE MIR 38 260 -2 929 184 0 2 chr13 117153449 117153879 -2591019 + (TCCA)n Simple_repeat Simple_repeat 1 428 0 221 385 86 0 chr13 117153880 117153997 -2590901 - L2 LINE L2 0 3272 3146 410 245 10 0 chr13 117154204 117154302 -2590596 + MER5A DNA MER1_type 11 109 -80 235 361 66 12 chr13 117156091 117156335 -2588563 + L2 LINE L2 2622 2878 -436 207 319 28 0 chr13 117156573 117156645 -2588253 + L2 LINE L2 3196 3269 -3 1517 195 79 99 chr13 117157306 117157357 -2587541 + LTR49 LTR ERV1 2 52 -543 2054 155 0 13 chr13 117157357 117157661 -2587237 - AluSx SINE Alu -12 300 1 1517 195 79 99 chr13 117157661 117158215 -2586683 + LTR49 LTR ERV1 52 595 0 1129 239 157 50 chr13 117158879 117159498 -2585400 + MER20B DNA MER1_type 99 783 0 2286 129 3 0 chr13 117159720 117160031 -2584867 - AluSx SINE Alu 0 312 1 700 216 105 117 chr13 117160109 117160460 -2584438 + MER7A DNA MER2_type 2 346 0 252 296 15 85 chr13 117162556 117162816 -2582082 + L1MC4 LINE L1 7801 8042 0 24 77 0 0 chr13 117162824 117162876 -2582022 + AT_rich Low_complexity Low_complexity 1 52 0 322 259 354 6 chr13 117162945 117163119 -2581779 - MIR SINE MIR -13 249 17 2430 93 3 0 chr13 117165498 117165809 -2579089 - AluSx SINE Alu 0 312 1 821 292 36 18 chr13 117165898 117166239 -2578659 + MLT1C LTR MaLR 108 612 -12 711 236 0 0 chr13 117166625 117166969 -2577929 + C-rich Low_complexity Low_complexity 1 344 0 263 174 58 14 chr13 117167030 117167099 -2577799 + MIR SINE MIR 7 78 -184 743 223 68 10 chr13 117167105 117167311 -2577587 + MER20 DNA MER1_type 2 219 0 2245 114 0 3 chr13 117168624 117168921 -2575977 - AluSx SINE Alu -16 296 1 206 288 34 0 chr13 117172293 117172352 -2572546 + L2 LINE L2 3010 3070 -202 283 263 107 71 chr13 117172684 117173038 -2571860 - MLT1H1 LTR MaLR -75 474 60 21 0 0 0 chr13 117173190 117173211 -2571687 + AT_rich Low_complexity Low_complexity 1 21 0 326 343 108 20 chr13 117173415 117174208 -2570690 + L1P LINE L1 4118 4980 -1166 251 318 87 63 chr13 117174537 117174917 -2569981 + L1ME4a LINE L1 5352 5740 -381 580 196 130 0 chr13 117174924 117175062 -2569836 + FRAM SINE Alu 6 161 -15 307 363 74 52 chr13 117175091 117175416 -2569482 + L1ME4a LINE L1 5772 6103 -18 205 205 0 0 chr13 117176205 117176244 -2568654 + A-rich Low_complexity Low_complexity 1 39 0 2634 113 44 0 chr13 117177350 117177758 -2567140 - LOR1a LTR ERV1 0 497 72 1080 239 83 25 chr13 117179143 117179469 -2565429 - MLT1A2 LTR MaLR -11 363 19 1890 162 3 25 chr13 117180166 117180480 -2564418 - AluJb SINE Alu -5 307 1 228 345 46 35 chr13 117181699 117181896 -2563002 - MLT1I LTR MaLR -170 239 41 2227 131 0 3 chr13 117182101 117182415 -2562483 - AluSq SINE Alu 0 313 1 237 83 0 0 chr13 117182672 117182708 -2562190 + (CA)n Simple_repeat Simple_repeat 1 36 0 216 288 17 0 chr13 117182774 117182833 -2562065 - MIR SINE MIR -84 124 65 21 0 0 0 chr13 117182848 117182869 -2562029 + AT_rich Low_complexity Low_complexity 1 21 0 2716 165 27 4 chr13 117182873 117183399 -2561499 - L1MB3 LINE L1 -3 6180 5643 622 293 48 18 chr13 117183776 117184005 -2560893 - HAL1 LINE L1 -746 1761 1526 273 267 23 0 chr13 117184007 117184093 -2560805 + MLT1L LTR MaLR 150 237 -378 373 204 26 80 chr13 117184392 117184505 -2560393 + MER3 DNA MER1_type 103 209 0 195 42 0 0 chr13 117184884 117184908 -2559990 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2355 111 0 13 chr13 117184912 117185228 -2559670 - AluSx SINE Alu 0 312 1 1345 118 40 31 chr13 117185479 117185707 -2559191 + MER30 DNA MER1_type 1 230 0 1720 159 3 24 chr13 117188731 117189021 -2555877 - AluJo SINE Alu -24 288 5 2196 109 0 3 chr13 117189287 117189597 -2555301 + AluSx SINE Alu 1 309 0 1222 211 183 20 chr13 117191297 117191690 -2553208 - MLT1C LTR MaLR -10 457 1 272 253 0 36 chr13 117193459 117193542 -2551356 + (TGGA)n Simple_repeat Simple_repeat 4 83 0 327 101 43 65 chr13 117193586 117193725 -2551173 + (TGGA)n Simple_repeat Simple_repeat 3 138 0 437 204 39 50 chr13 117193785 117193966 -2550932 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 266 383 11 11 chr13 117193892 117194067 -2550831 + (CGGA)n Simple_repeat Simple_repeat 2 176 0 * 247 296 0 14 chr13 117194032 117194103 -2550795 + (TGGG)n Simple_repeat Simple_repeat 2 71 0 * 203 314 0 29 chr13 117194530 117194632 -2550266 + T-rich Low_complexity Low_complexity 4 102 0 601 250 99 10 chr13 117194883 117195075 -2549823 - MER3 DNA MER1_type 0 209 1 323 263 13 0 chr13 117195116 117195192 -2549706 - MER3 DNA MER1_type -132 77 1 304 276 13 0 chr13 117195233 117195309 -2549589 - MER3 DNA MER1_type -132 77 1 290 289 13 0 chr13 117195350 117195426 -2549472 - MER3 DNA MER1_type -132 77 1 290 289 13 0 chr13 117195467 117195543 -2549355 - MER3 DNA MER1_type -132 77 1 285 265 15 0 chr13 117195591 117195659 -2549239 - MER3 DNA MER1_type -140 69 1 290 289 13 0 chr13 117195700 117195776 -2549122 - MER3 DNA MER1_type -132 77 1 23 0 0 0 chr13 117196391 117196414 -2548484 + AT_rich Low_complexity Low_complexity 1 23 0 318 353 53 12 chr13 117196426 117196596 -2548302 + MIR SINE MIR 26 202 -60 5978 52 3 4 chr13 117196788 117197562 -2547336 - L1PA6 LINE L1 0 6154 5382 298 25 50 0 chr13 117197738 117197778 -2547120 + U2 snRNA snRNA 1 42 -146 909 233 75 0 chr13 117198433 117198661 -2546237 - MER68 LTR ERV1 -2 560 316 1421 193 79 0 chr13 117198975 117199265 -2545633 - MER68 LTR ERV1 -248 314 2 346 277 75 19 chr13 117199731 117199890 -2545008 + MLT1J LTR MaLR 1 168 -343 289 279 8 49 chr13 117200044 117200166 -2544732 + MLT1J LTR MaLR 393 509 -2 216 283 83 17 chr13 117202479 117202599 -2542299 + MIR SINE MIR 17 144 -64 234 156 0 0 chr13 117203829 117203874 -2541024 + GA-rich Low_complexity Low_complexity 1 45 0 1851 124 67 7 chr13 117204295 117204578 -2540320 + AluSg SINE Alu 1 300 -10 900 242 109 110 chr13 117207471 117208536 -2536362 - HAL1 LINE L1 -383 2124 1059 7293 41 12 0 chr13 117208536 117209625 -2535273 - L1PA5 LINE L1 0 6154 5077 900 242 109 110 chr13 117209625 117209876 -2535022 - HAL1 LINE L1 -1448 1059 809 553 281 91 0 chr13 117209881 117210080 -2534818 - MER63 DNA MER1_type -7 1054 838 327 85 0 0 chr13 117210132 117210179 -2534719 + (TCCCC)n Simple_repeat Simple_repeat 1 47 0 309 260 75 48 chr13 117210179 117210325 -2534573 - MER63 DNA MER1_type -53 783 8 25 65 0 0 chr13 117210925 117210971 -2533927 + AT_rich Low_complexity Low_complexity 1 46 0 2101 141 141 11 chr13 117211646 117212023 -2532875 - MSTA LTR MaLR -2 426 1 207 130 56 0 chr13 117212116 117212170 -2532728 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 1480 162 73 50 chr13 117213412 117213893 -2531005 + MSTA LTR MaLR 1 428 0 377 274 9 0 chr13 117216348 117216454 -2528444 + MIR SINE MIR 104 210 -52 202 207 49 85 chr13 117216517 117216599 -2528299 - MIR SINE MIR -115 147 69 264 270 14 14 chr13 117216726 117216800 -2528098 + MIR SINE MIR 113 186 -76 1354 168 56 18 chr13 117216807 117217092 -2527806 + L1MA8 LINE L1 5995 6290 -1 667 312 70 36 chr13 117217094 117217686 -2527212 - MER20B DNA MER1_type -88 695 30 372 360 70 10 chr13 117220644 117220844 -2524054 - MIR SINE MIR -6 256 45 181 298 0 0 chr13 117221220 117221267 -2523631 - L2 LINE L2 -217 3055 3009 565 290 21 41 chr13 117221848 117222233 -2522665 - MER39 LTR ERV1 -1 706 67 3342 114 45 2 chr13 117222325 117222818 -2522080 + MER75 DNA T2_type 1 514 0 406 314 157 21 chr13 117222836 117223123 -2521775 - L1M4 LINE L1 -1091 5055 4730 353 283 116 22 chr13 117223134 117223272 -2521626 - L1M4 LINE L1 -1457 4689 4539 199 167 30 0 chr13 117224324 117224390 -2520508 + (TG)n Simple_repeat Simple_repeat 1 68 0 529 107 61 10 chr13 117224474 117224876 -2520022 + (TG)n Simple_repeat Simple_repeat 1 422 0 304 89 63 0 chr13 117224901 117224980 -2519918 + (TG)n Simple_repeat Simple_repeat 1 84 0 620 71 71 12 chr13 117225007 117225176 -2519722 + (TG)n Simple_repeat Simple_repeat 1 179 0 588 100 65 6 chr13 117225188 117225358 -2519540 + (TG)n Simple_repeat Simple_repeat 1 180 0 2738 36 0 0 chr13 117226124 117226431 -2518467 + AluY SINE Alu 1 307 -4 218 325 104 39 chr13 117227047 117227201 -2517697 + MIR SINE MIR 20 183 -79 1830 158 47 82 chr13 117228923 117229352 -2515546 + MLT2D LTR ERVL 1 414 0 260 229 0 16 chr13 117231860 117231921 -2512977 - LTR67 LTR ERVL 0 557 498 * 266 212 15 15 chr13 117231918 117231984 -2512914 - LTR67 LTR ERVL -5 552 487 2500 153 24 29 chr13 117235621 117236221 -2508677 - MER4E LTR ERV1 0 766 1 230 336 51 29 chr13 117239028 117239165 -2505733 - MIR3 SINE MIR -10 198 59 370 330 81 14 chr13 117239388 117239597 -2505301 - MIR SINE MIR -14 248 26 243 263 0 0 chr13 117240269 117240349 -2504549 + (CA)n Simple_repeat Simple_repeat 1 80 0 500 89 13 0 chr13 117240781 117240860 -2504038 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 25 0 0 0 chr13 117242163 117242188 -2502710 + AT_rich Low_complexity Low_complexity 1 25 0 2195 110 0 0 chr13 117242238 117242549 -2502349 - AluSx SINE Alu 0 311 1 1783 154 16 29 chr13 117243151 117243463 -2501435 - AluJo SINE Alu -4 308 1 402 304 93 12 chr13 117243731 117243892 -2501006 - MIR SINE MIR -66 196 23 829 134 0 8 chr13 117245380 117245507 -2499391 + FRAM SINE Alu 36 161 -15 190 342 67 17 chr13 117246900 117247020 -2497878 - MIR SINE MIR -112 150 25 22 0 0 0 chr13 117249506 117249528 -2495370 + GC_rich Low_complexity Low_complexity 1 22 0 247 185 15 46 chr13 117249868 117249933 -2494965 - MIR3 SINE MIR -134 74 12 203 191 24 0 chr13 117250015 117250057 -2494841 - MIR SINE MIR -110 152 110 295 205 25 16 chr13 117250433 117250555 -2494343 + CT-rich Low_complexity Low_complexity 2 124 0 394 335 35 4 chr13 117250598 117250825 -2494073 - L1MD2 LINE L1 -17 6342 6109 5039 235 84 32 chr13 117250878 117253226 -2491672 - L1MD2 LINE L1 -444 5915 3448 1876 125 6 55 chr13 117255431 117255758 -2489140 + AluSx SINE Alu 1 311 -1 332 307 170 18 chr13 117255770 117255988 -2488910 + MIR SINE MIR 12 262 0 284 336 52 0 chr13 117256089 117256223 -2488675 + MIR SINE MIR 71 211 -51 387 292 51 92 chr13 117256945 117257140 -2487758 + MIR SINE MIR 61 247 -15 481 342 60 0 chr13 117258638 117258837 -2486061 - MIR SINE MIR -4 258 48 800 271 19 5 chr13 117258889 117259103 -2485795 - MER58A DNA MER1_type 0 224 8 1345 250 13 13 chr13 117261111 117261427 -2483471 + MER58B DNA MER1_type 26 341 0 183 80 0 0 chr13 117262090 117262115 -2482783 + (TC)n Simple_repeat Simple_repeat 1 25 0 287 356 83 35 chr13 117262829 117263059 -2481839 - MIR SINE MIR -14 248 8 2137 237 23 22 chr13 117265776 117266332 -2478566 + L1MB5 LINE L1 5586 6142 -32 468 368 60 13 chr13 117266341 117266640 -2478258 - L1ME LINE L1 -313 5808 5496 498 258 0 0 chr13 117266729 117266888 -2478010 + CT-rich Low_complexity Low_complexity 2 160 0 761 219 58 114 chr13 117267998 117268391 -2476507 + MLT1B LTR MaLR 4 374 -16 672 257 3 0 chr13 117269927 117270276 -2474622 + (TG)n Simple_repeat Simple_repeat 1 350 0 24 0 0 0 chr13 117270341 117270365 -2474533 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr13 117270779 117270824 -2474074 + AT_rich Low_complexity Low_complexity 1 45 0 203 0 0 130 chr13 117272991 117273068 -2471830 + (CCCCCT)n Simple_repeat Simple_repeat 6 72 0 261 98 0 0 chr13 117273214 117273255 -2471643 + (TTAGGG)n Simple_repeat Simple_repeat 3 43 0 246 242 0 0 chr13 117274478 117274544 -2470354 + CT-rich Low_complexity Low_complexity 3 68 0 275 267 108 8 chr13 117275468 117275588 -2469310 - MLT1J2 LTR MaLR -318 132 1 211 322 58 11 chr13 117276376 117276463 -2468435 + L2 LINE L2 3221 3311 -2 417 285 93 20 chr13 117277459 117277610 -2467288 + MIR SINE MIR 6 167 -95 552 353 43 0 chr13 117278276 117278483 -2466415 - MIR SINE MIR -28 234 19 1658 244 44 24 chr13 117278660 117279114 -2465784 - MLT1C LTR MaLR -4 463 1 2132 131 58 45 chr13 117279233 117279630 -2465268 - MSTB LTR MaLR -9 417 16 369 0 0 0 chr13 117280916 117280957 -2463941 + (TG)n Simple_repeat Simple_repeat 2 42 0 231 114 0 0 chr13 117283106 117283141 -2461757 + (T)n Simple_repeat Simple_repeat 1 35 0 333 118 0 0 chr13 117283483 117283534 -2461364 + (A)n Simple_repeat Simple_repeat 1 51 0 2007 138 3 0 chr13 117286140 117286438 -2458460 + AluSx SINE Alu 1 299 -13 744 246 210 31 chr13 117288300 117288690 -2456208 - MLT1C LTR MaLR 0 467 8 1110 108 13 0 chr13 117289897 117290055 -2454843 + AluY SINE Alu 139 298 -13 552 237 47 117 chr13 117292401 117292658 -2452240 + MLT1B LTR MaLR 152 390 0 249 119 0 0 chr13 117293824 117293866 -2451032 + (CA)n Simple_repeat Simple_repeat 1 42 0 729 190 0 0 chr13 117293887 117294061 -2450837 + (CA)n Simple_repeat Simple_repeat 2 175 0 258 206 0 0 chr13 117294079 117294147 -2450751 + (CA)n Simple_repeat Simple_repeat 2 69 0 224 348 79 0 chr13 117296388 117296477 -2448421 + L2 LINE L2 3136 3231 -41 1900 194 33 25 chr13 117297636 117298034 -2446864 - Tigger2a DNA MER2_type -33 401 1 1837 198 68 8 chr13 117298624 117299024 -2445874 + MSTB LTR MaLR 1 424 -2 570 313 17 0 chr13 117299990 117300169 -2444729 + MER5A DNA MER1_type 7 188 -1 338 270 68 27 chr13 117300272 117300420 -2444478 - MER5B DNA MER1_type -24 154 1 216 119 60 30 chr13 117300806 117300873 -2444025 + CT-rich Low_complexity Low_complexity 2 70 0 200 294 43 76 chr13 117300993 117301085 -2443813 - L2 LINE L2 -12 3301 3213 760 241 24 5 chr13 117301175 117301382 -2443516 - L1MC3 LINE L1 -36 7749 7539 189 212 0 0 chr13 117301412 117301445 -2443453 - MIR SINE MIR -34 228 196 1081 192 33 21 chr13 117301949 117302189 -2442709 - MLT1B LTR MaLR -147 243 1 2302 76 0 7 chr13 117505138 117505439 -2239459 + AluSq SINE Alu 1 299 -14 458 228 24 16 chr13 117505951 117506078 -2238820 - Tigger8 DNA MER2_type -127 539 412 297 294 102 0 chr13 117506796 117506971 -2237927 - L1ME3A LINE L1 -260 5910 5694 2136 61 25 0 chr13 117506971 117507248 -2237650 + AluY SINE Alu 13 296 -15 297 294 102 0 chr13 117507248 117507322 -2237576 - L1ME3A LINE L1 -476 5694 5629 264 287 193 7 chr13 117510939 117511089 -2233809 - L2 LINE L2 0 3272 3095 195 69 0 0 chr13 117511217 117511246 -2233652 + (TG)n Simple_repeat Simple_repeat 1 29 0 489 252 65 7 chr13 117511292 117511447 -2233451 - MLT1J LTR MaLR -344 167 4 1866 107 72 10 chr13 117511638 117511928 -2232970 + AluSx SINE Alu 1 308 -4 341 292 9 26 chr13 117512226 117512339 -2232559 + MLT1A1 LTR MaLR 138 248 -117 1168 172 90 64 chr13 117512610 117512759 -2232139 + AluJo SINE Alu 1 162 -150 2100 76 0 63 chr13 117512759 117513074 -2231824 + AluY SINE Alu 1 295 -16 1168 172 90 64 chr13 117513074 117513191 -2231707 + AluJo SINE Alu 162 274 -38 286 176 11 11 chr13 117513238 117513329 -2231569 + GA-rich Low_complexity Low_complexity 3 93 0 389 241 0 0 chr13 117513511 117513598 -2231300 - L1 LINE L1 -3425 2721 2635 356 236 57 9 chr13 117513706 117513812 -2231086 - L1MD1 LINE L1 -79 6163 6053 849 261 78 15 chr13 117513949 117514308 -2230590 - L1MD1 LINE L1 -425 5817 5613 2292 71 0 7 chr13 117514639 117514935 -2229963 - AluY SINE Alu -17 294 1 1464 199 3 7 chr13 117514936 117515228 -2229670 - AluJb SINE Alu -21 291 1 280 272 95 41 chr13 117517792 117517939 -2226959 - MIR SINE MIR -99 163 9 243 173 19 111 chr13 117519246 117519408 -2225490 + (TCTCTG)n Simple_repeat Simple_repeat 6 152 0 1580 162 26 39 chr13 117519868 117520177 -2224721 + AluJo SINE Alu 1 305 -7 566 225 16 8 chr13 117520607 117520736 -2224162 + L1MB8 LINE L1 6049 6178 0 226 260 40 98 chr13 117520857 117521030 -2223868 + MLT1J LTR MaLR 326 488 -23 465 232 43 9 chr13 117521322 117521453 -2223445 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1163 192 40 0 chr13 117521451 117521675 -2223223 + Tigger3(Golem) DNA MER2_type 2772 3004 -25 210 256 0 0 chr13 117521829 117521907 -2222991 + (CA)n Simple_repeat Simple_repeat 2 79 0 724 232 223 14 chr13 117522034 117522388 -2222510 - HAL1 LINE L1 -739 1768 1341 371 236 0 9 chr13 117522397 117522503 -2222395 + HAL1 LINE L1 1156 1260 -1247 429 254 98 82 chr13 117522577 117522731 -2222167 - HAL1 LINE L1 -1379 1128 967 1734 124 28 65 chr13 117522731 117523054 -2221844 - AluSx SINE Alu -1 311 1 429 254 98 82 chr13 117523054 117523143 -2221755 - HAL1 LINE L1 -1540 967 881 249 33 0 0 chr13 117523179 117523209 -2221689 + (TA)n Simple_repeat Simple_repeat 2 31 0 1393 175 37 7 chr13 117523209 117523478 -2221420 - AluJb SINE Alu -22 290 14 2184 104 3 0 chr13 117523955 117524263 -2220635 + AluSx SINE Alu 2 310 -2 1798 148 113 6 chr13 117525509 117525846 -2219052 - THE1C LTR MaLR -2 373 1 187 288 0 17 chr13 117526149 117526208 -2218690 - L2 LINE L2 -1 3312 3255 303 242 33 67 chr13 117526219 117526339 -2218559 - L1M4 LINE L1 -916 5230 5115 467 270 40 0 chr13 117529686 117529812 -2215086 - Charlie8 DNA MER1_type -2204 213 83 2480 50 0 0 chr13 117529894 117530197 -2214701 - AluY SINE Alu -8 303 1 345 82 0 0 chr13 117530706 117530755 -2214143 + (TA)n Simple_repeat Simple_repeat 2 50 0 1009 285 27 27 chr13 117530855 117531254 -2213644 - L1M3 LINE L1 -380 5800 5370 732 291 74 24 chr13 117532698 117533076 -2211822 + L1MC4a LINE L1 6887 7283 -525 1647 143 30 8 chr13 117533222 117533488 -2211410 - AluJo SINE Alu -29 283 12 446 284 16 0 chr13 117533509 117533636 -2211262 + L1MD3 LINE L1 7857 7985 -10 347 301 19 0 chr13 117534846 117534949 -2209949 + MER58A DNA MER1_type 22 126 0 * 408 233 101 9 chr13 117534946 117535072 -2209826 - MLT1B LTR MaLR -2 388 255 357 279 108 8 chr13 117535133 117535262 -2209636 - MLT1B LTR MaLR -248 142 1 243 167 32 13 chr13 117535631 117535706 -2209192 - MIR SINE MIR -68 140 72 1451 206 141 3 chr13 117539170 117539538 -2205360 - L1MB3 LINE L1 -286 5897 5479 1007 249 60 6 chr13 117539542 117539896 -2205002 - L1MB3 LINE L1 -743 5403 5057 1387 101 0 29 chr13 117539900 117540107 -2204791 - AluSx SINE Alu -11 299 99 306 120 0 0 chr13 117540131 117540181 -2204717 - L1M4c LINE L1 -4540 1844 1795 601 159 9 53 chr13 117540181 117540294 -2204604 - AluSx SINE Alu -203 109 2 5609 238 73 33 chr13 117540296 117541401 -2203497 - L1MB3 LINE L1 -1093 5053 3840 1573 168 34 10 chr13 117541401 117541693 -2203205 + AluJo SINE Alu 1 299 -13 5609 238 73 33 chr13 117541693 117542488 -2202410 - L1MB3 LINE L1 -2306 3840 3078 3167 167 68 6 chr13 117542470 117543141 -2201757 - L1M4c LINE L1 -4106 2276 1078 * 4544 201 33 25 chr13 117544139 117545627 -2199271 + L1PA15 LINE L1 4661 6164 -1 1383 138 56 0 chr13 117549503 117549735 -2195163 + MER1B DNA MER1_type 135 339 0 1396 218 48 3 chr13 117551123 117551454 -2193444 + MER47A DNA MER2_type 8 353 -13 243 0 0 0 chr13 117551859 117551886 -2193012 + (CA)n Simple_repeat Simple_repeat 1 27 0 642 232 0 0 chr13 117553105 117553269 -2191629 + (CA)n Simple_repeat Simple_repeat 2 165 0 1999 90 35 7 chr13 117555252 117555540 -2189358 - AluSc SINE Alu 0 309 14 7995 60 26 2 chr13 117557336 117558319 -2186579 - LTR13 LTR ERVK 0 1007 1 2220 97 7 0 chr13 117560185 117560495 -2184403 - AluSx SINE Alu 0 312 1 1884 147 3 0 chr13 117561154 117561446 -2183452 - AluJb SINE Alu -19 293 1 2119 116 3 0 chr13 117563463 117563764 -2181134 - AluSx SINE Alu -10 302 1 1720 153 0 27 chr13 117563770 117564064 -2180834 - AluJb SINE Alu -26 286 1 454 306 163 0 chr13 117564647 117564865 -2180033 + MLT2C1 LTR ERVL 1 251 -163 306 186 39 20 chr13 117565396 117565498 -2179400 + (CA)n Simple_repeat Simple_repeat 1 104 0 251 200 40 20 chr13 117569013 117569113 -2175785 + (CACCC)n Simple_repeat Simple_repeat 5 106 0 988 244 59 26 chr13 117571301 117571572 -2173326 + MLT1A1 LTR MaLR 86 365 0 986 215 147 19 chr13 117572121 117572428 -2172470 + MLT1F LTR MaLR 197 542 0 246 322 0 11 chr13 117573048 117573138 -2171760 + MER81 DNA DNA 1 89 -25 1324 162 17 8 chr13 117573654 117573889 -2171009 - AluJb SINE Alu -12 300 64 1089 137 168 0 chr13 117574760 117574957 -2169941 - MER30 DNA MER1_type 0 230 1 289 189 122 0 chr13 117575106 117575180 -2169718 - MER58B DNA MER1_type -37 304 222 264 288 61 38 chr13 117576402 117576534 -2168364 + MLT1F1 LTR MaLR 246 380 -187 277 248 47 60 chr13 117578133 117578282 -2166616 - MLT1A2 LTR MaLR -161 213 67 833 136 32 0 chr13 117580040 117580165 -2164733 - AluSq/x SINE Alu -177 135 7 249 184 0 0 chr13 117580212 117580261 -2164637 - Alu SINE Alu -8 291 243 2411 55 0 0 chr13 117581215 117581507 -2163391 - AluY SINE Alu -19 292 1 441 291 161 20 chr13 117582228 117582482 -2162416 + L1ME4a LINE L1 5830 6119 -2 2253 87 0 3 chr13 117585278 117585578 -2159320 + AluSp SINE Alu 1 299 -14 2202 82 34 0 chr13 117586371 117586665 -2158233 - AluSq SINE Alu -8 305 2 2463 68 0 0 chr13 117586695 117587006 -2157892 - AluY SINE Alu 0 311 1 363 204 5 73 chr13 117588677 117588868 -2156030 + (CCA)n Simple_repeat Simple_repeat 3 180 0 1996 103 31 0 chr13 117589585 117589876 -2155022 + AluSq SINE Alu 1 300 -13 1847 109 81 7 chr13 117589971 117590254 -2154644 + AluSx SINE Alu 1 304 -8 222 235 0 0 chr13 117591966 117592017 -2152881 + A-rich Low_complexity Low_complexity 1 51 0 2586 158 60 2 chr13 117592298 117592767 -2152131 + L1MB3 LINE L1 5652 6147 -36 270 0 0 0 chr13 117593381 117593411 -2151487 + (CA)n Simple_repeat Simple_repeat 1 30 0 1227 231 18 7 chr13 117593646 117593923 -2150975 + AluJo SINE Alu 13 292 -20 1035 174 0 0 chr13 117593929 117594090 -2150808 + FRAM SINE Alu 1 161 -5 1316 260 7 13 chr13 117594289 117594593 -2150305 + MER7A DNA MER2_type 10 309 -37 369 183 0 0 chr13 117594710 117594770 -2150128 + MER7A DNA MER2_type 277 336 0 1048 149 12 0 chr13 117594822 117594990 -2149908 + AluJo SINE Alu 1 170 -142 1672 302 97 29 chr13 117595194 117596739 -2148159 - L1ME3 LINE L1 -253 5909 4258 985 280 78 84 chr13 117596749 117597546 -2147352 - L1ME3 LINE L1 -2003 4143 3352 584 300 69 20 chr13 117597731 117598034 -2146864 - L1ME3 LINE L1 -3451 2695 2378 1425 110 150 35 chr13 117598113 117598389 -2146509 + AluSg SINE Alu 1 305 0 1512 166 107 3 chr13 117598391 117598681 -2146217 - Tigger3(Golem) DNA MER2_type -2709 320 1 333 282 64 70 chr13 117598899 117599132 -2145766 + L1MC1 LINE L1 1122 3531 -2875 2079 86 0 0 chr13 117600242 117600509 -2144389 + AluSx SINE Alu 1 267 -45 2195 88 0 0 chr13 117601278 117601562 -2143336 + AluSc SINE Alu 1 284 -25 1965 86 16 0 chr13 117603438 117603727 -2141171 + AluSx SINE Alu 24 316 0 659 223 101 43 chr13 117604378 117604737 -2140161 + Charlie1b DNA MER1_type 15 482 -41 2558 122 36 0 chr13 117604739 117605124 -2139774 + L1PA15 LINE L1 5767 6165 0 443 165 118 12 chr13 117605510 117605595 -2139303 - MER58A DNA MER1_type -11 96 3 728 175 70 2 chr13 117605949 117606109 -2138789 + L1MB5 LINE L1 5763 5920 -264 1574 153 23 0 chr13 117606223 117606484 -2138414 + L1MB5 LINE L1 5899 6165 -9 246 231 116 8 chr13 117608075 117608196 -2136702 + L2 LINE L2 1968 2101 -1213 1661 232 44 15 chr13 117609095 117609616 -2135282 + L1MC1 LINE L1 4366 4901 -1505 239 174 0 0 chr13 117609583 117609629 -2135269 + L1MC1 LINE L1 5544 5589 -2456 * 2421 93 0 19 chr13 117609629 117609942 -2134956 + AluSc SINE Alu 3 309 0 1958 144 49 0 chr13 117609971 117610256 -2134642 + AluSx SINE Alu 7 305 -7 5807 143 17 20 chr13 117610256 117610541 -2134357 + L1MC1 LINE L1 5583 5867 -726 2481 92 0 3 chr13 117610541 117610855 -2134043 + AluSp SINE Alu 1 313 0 5807 143 17 20 chr13 117610855 117611147 -2133751 + L1MC1 LINE L1 5867 6158 -435 2324 105 3 0 chr13 117611147 117611443 -2133455 + AluSx SINE Alu 2 298 -14 5807 143 17 20 chr13 117611443 117611873 -2133025 + L1MC1 LINE L1 6158 6588 -5 1165 234 69 53 chr13 117611886 117612411 -2132487 - L1M4 LINE L1 -1512 4634 4102 246 321 23 23 chr13 117612575 117612796 -2132102 - L1MC4 LINE L1 -133 7909 7689 304 129 59 47 chr13 117612796 117612881 -2132017 - L1MB8 LINE L1 0 6178 6093 36 0 0 0 chr13 117612881 117612917 -2131981 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 117612946 117612967 -2131931 + AT_rich Low_complexity Low_complexity 1 21 0 228 135 0 0 chr13 117612975 117613012 -2131886 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2051 182 62 2 chr13 117613013 117613446 -2131452 - L1MB4 LINE L1 -35 6145 5687 1840 142 32 18 chr13 117613486 117613824 -2131074 + MER2 DNA MER2_type 2 344 0 431 174 43 0 chr13 117613828 117613920 -2130978 - L1MB4 LINE L1 -2269 3877 3782 2066 172 48 70 chr13 117613923 117614510 -2130388 + L1M4c LINE L1 1345 1918 -4466 785 223 27 10 chr13 117614484 117614739 -2130159 + L1M4c LINE L1 2368 2583 -3799 * 2276 119 0 3 chr13 117615000 117615310 -2129588 - AluSx SINE Alu -1 311 3 290 249 151 27 chr13 117615331 117615516 -2129382 - L1MC5 LINE L1 -50 7911 7704 * 588 193 41 29 chr13 117615505 117615676 -2129222 + L1 LINE L1 4157 4329 -1817 2676 58 0 0 chr13 117615676 117615985 -2128913 - AluY SINE Alu -2 309 1 316 272 107 5 chr13 117616294 117616443 -2128455 - L1M4 LINE L1 -355 5823 5665 320 237 72 10 chr13 117616453 117616550 -2128348 - L1M4 LINE L1 -584 5600 5498 1781 156 10 7 chr13 117616578 117616866 -2128032 + AluJo SINE Alu 1 289 -23 290 323 31 51 chr13 117617138 117617353 -2127545 - L1M4 LINE L1 -753 5413 5202 266 258 67 57 chr13 117617722 117617916 -2126982 - L1M4 LINE L1 -1452 4694 4499 2500 139 19 34 chr13 117619306 117619774 -2125124 + MER41B LTR ERV1 1 461 -174 317 299 102 62 chr13 117620087 117620411 -2124487 - HAL1 LINE L1 -854 1653 1317 572 252 27 0 chr13 117623399 117623546 -2121352 - MIR SINE MIR -76 186 36 2795 102 43 0 chr13 117624405 117624846 -2120052 + L1PB1 LINE L1 5692 6151 0 408 55 0 0 chr13 117625795 117625850 -2119048 + (CA)n Simple_repeat Simple_repeat 2 56 0 2167 114 0 4 chr13 117626675 117626986 -2117912 + AluSg SINE Alu 1 310 0 1046 185 152 20 chr13 117627665 117627968 -2116930 + MER2 DNA MER2_type 1 343 -1 380 245 22 25 chr13 117628113 117628253 -2116645 + L1MC4a LINE L1 7161 7253 -555 3465 123 60 23 chr13 117629709 117630321 -2114577 + MER41B LTR ERV1 1 635 0 324 143 0 0 chr13 117632280 117632336 -2112562 + (TC)n Simple_repeat Simple_repeat 2 57 0 1843 120 109 4 chr13 117633216 117633492 -2111406 + AluSq SINE Alu 1 305 -8 24 0 0 0 chr13 117633691 117633715 -2111183 + AT_rich Low_complexity Low_complexity 1 24 0 276 338 86 0 chr13 117636481 117636632 -2108266 + MIR3 SINE MIR 43 206 -2 395 303 58 8 chr13 117640427 117640668 -2104230 - L1MB2 LINE L1 -208 5963 5711 396 355 7 0 chr13 117641763 117641915 -2102983 + (TGG)n Simple_repeat Simple_repeat 2 154 0 2328 89 0 3 chr13 117642786 117643079 -2101819 - AluSx SINE Alu -20 292 1 1870 151 32 0 chr13 117643188 117643473 -2101425 - AluJb SINE Alu -15 297 4 1376 164 118 52 chr13 117644246 117644398 -2100500 - L1M3 LINE L1 -361 5822 5681 2575 78 0 0 chr13 117644398 117644705 -2100193 - AluSx SINE Alu -5 307 1 1376 164 118 52 chr13 117644705 117644900 -2099998 - L1M3 LINE L1 -502 5681 5452 2648 42 7 7 chr13 117645358 117645664 -2099234 + AluY SINE Alu 1 306 -5 1846 145 43 4 chr13 117646291 117646567 -2098331 + AluSx SINE Alu 1 287 -25 191 81 54 0 chr13 117646568 117646605 -2098293 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 1241 129 11 0 chr13 117646623 117646801 -2098097 + AluJb SINE Alu 125 304 -8 200 412 0 0 chr13 117648512 117648677 -2096221 + (TTCGGG)n Simple_repeat Simple_repeat 1 165 0 189 107 0 0 chr13 117652417 117652445 -2092453 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 2609 58 10 0 chr13 117652446 117652754 -2092144 + AluY SINE Alu 1 311 0 240 230 71 40 chr13 117653929 117653978 -2090920 - HsTC2 DNA Tc2 -63 1835 1789 2341 64 0 0 chr13 117653978 117654291 -2090607 - AluY SINE Alu 0 313 1 240 230 71 40 chr13 117654291 117654366 -2090532 - HsTC2 DNA Tc2 -109 1789 1706 2398 102 3 0 chr13 117655291 117655594 -2089304 + AluSg SINE Alu 1 304 -6 452 118 0 35 chr13 117655663 117655748 -2089150 + FLAM_A SINE Alu 59 140 -2 695 173 15 15 chr13 117656015 117656148 -2088750 + FLAM_A SINE Alu 1 133 0 2629 58 0 3 chr13 117656779 117657089 -2087809 + AluY SINE Alu 1 309 -2 345 302 187 33 chr13 117657313 117657537 -2087361 + L1ME4a LINE L1 5500 5688 -433 2387 72 0 3 chr13 117657537 117657830 -2087068 + AluSg SINE Alu 1 292 -18 345 302 187 33 chr13 117657830 117657952 -2086946 + L1ME4a LINE L1 5688 5790 -331 2387 86 0 10 chr13 117657952 117658254 -2086644 + AluSq SINE Alu 1 299 -14 345 302 187 33 chr13 117658254 117658445 -2086453 + L1ME4a LINE L1 5790 6121 0 275 302 31 6 chr13 117659118 117659277 -2085621 + (TG)n Simple_repeat Simple_repeat 1 163 0 238 203 136 0 chr13 117659402 117659461 -2085437 + MIR SINE MIR 114 180 -82 2310 94 3 3 chr13 117659747 117660044 -2084854 - AluSp SINE Alu -16 297 1 1935 129 46 11 chr13 117660046 117660326 -2084572 - AluJo SINE Alu -22 290 1 1053 184 0 0 chr13 117660376 117660550 -2084348 + AluJb SINE Alu 137 310 -2 1747 158 29 11 chr13 117660550 117660823 -2084075 + AluSq SINE Alu 1 278 -35 476 223 2 0 chr13 117661104 117661226 -2083672 + L1MB1 LINE L1 5809 5930 -238 1162 211 92 7 chr13 117661231 117661559 -2083339 - LTR56 LTR ERV1 -9 428 101 3929 82 15 0 chr13 117661580 117662126 -2082772 - MER41A LTR ERV1 0 554 1 12302 92 22 22 chr13 117662126 117663028 -2081870 - MER41A-int LTR ERV1 -2 5944 5044 2363 88 0 3 chr13 117663028 117663322 -2081576 - AluY SINE Alu -17 294 2 12302 92 22 22 chr13 117663322 117663530 -2081368 - MER41A-int LTR ERV1 -902 5044 4838 2431 102 0 0 chr13 117663530 117663835 -2081063 + AluSx SINE Alu 1 305 -7 12302 92 22 22 chr13 117663835 117664542 -2080356 - MER41A-int LTR ERV1 -1108 4838 4122 2351 112 3 0 chr13 117664542 117664846 -2080052 + AluSx SINE Alu 1 305 -7 12302 92 22 22 chr13 117664846 117664895 -2080003 - MER41A-int LTR ERV1 -1824 4122 4075 2374 124 32 32 chr13 117664889 117665426 -2079472 - MER41A-int LTR ERV1 -3888 3928 1304 * 14626 190 12 18 chr13 117665426 117666870 -2078028 + L1PB1 LINE L1 1493 2945 -3206 2226 104 28 0 chr13 117666870 117667159 -2077739 + AluSg SINE Alu 1 297 -13 14626 190 12 18 chr13 117667159 117668070 -2076828 + L1PB1 LINE L1 2945 3860 -2291 2145 117 7 13 chr13 117668070 117668369 -2076529 + AluSp SINE Alu 5 301 -12 14626 190 12 18 chr13 117668369 117669718 -2075180 + L1PB1 LINE L1 3860 5216 -935 2432 76 3 16 chr13 117669718 117670022 -2074876 + AluSp SINE Alu 1 300 -13 14626 190 12 18 chr13 117670022 117670669 -2074229 + L1PB1 LINE L1 5216 5819 -332 2196 97 0 0 chr13 117670669 117670975 -2073923 + AluSc SINE Alu 1 306 0 14626 190 12 18 chr13 117670975 117671131 -2073767 + L1PB1 LINE L1 5819 5974 -177 2319 118 0 0 chr13 117671134 117671440 -2073458 + AluSg SINE Alu 5 310 0 2332 67 47 133 chr13 117671440 117671728 -2073170 - MER41A LTR ERV1 -127 427 193 2618 47 0 28 chr13 117671728 117672048 -2072850 - AluY SINE Alu 0 311 1 2332 67 47 133 chr13 117672048 117672225 -2072673 - MER41A LTR ERV1 -361 193 2 414 147 0 13 chr13 117672226 117672301 -2072597 - LTR56 LTR ERV1 -363 82 9 785 201 109 4 chr13 117672311 117672540 -2072358 + L1MB3 LINE L1 5929 6181 -2 32 43 0 0 chr13 117672850 117672896 -2072002 + AT_rich Low_complexity Low_complexity 1 46 0 2567 72 0 0 chr13 117673174 117673479 -2071419 - AluSq SINE Alu -8 305 1 2335 81 7 7 chr13 117674051 117674346 -2070552 + AluY SINE Alu 2 296 -15 1526 183 36 42 chr13 117674378 117674734 -2070164 - MER4A LTR ERV1 -310 354 1 1707 149 75 77 chr13 117674872 117675088 -2069810 - MER4E LTR ERV1 -70 709 494 2544 73 0 0 chr13 117675088 117675391 -2069507 + AluSc SINE Alu 1 303 -6 1707 149 75 77 chr13 117675391 117675439 -2069459 - MER4E LTR ERV1 -285 494 447 2629 43 0 3 chr13 117675439 117675742 -2069156 + AluY SINE Alu 1 302 -9 1707 149 75 77 chr13 117675742 117675878 -2069020 - MER4E LTR ERV1 -332 447 309 245 179 64 26 chr13 117675925 117676003 -2068895 + MER34 LTR ERV1 415 495 -47 242 279 188 29 chr13 117676346 117676554 -2068344 + L2 LINE L2 2493 2733 -581 242 351 0 0 chr13 117676848 117677013 -2067885 + (CACCC)n Simple_repeat Simple_repeat 3 167 0 256 345 0 0 chr13 117677028 117677193 -2067705 + (CACCC)n Simple_repeat Simple_repeat 3 167 0 257 296 0 54 chr13 117677577 117677763 -2067135 + (CACCC)n Simple_repeat Simple_repeat 2 177 0 2133 114 37 0 chr13 117679090 117679389 -2065509 - AluSp SINE Alu -3 310 1 334 153 0 0 chr13 117679972 117680031 -2064867 + Alu SINE Alu 243 301 -1 307 227 80 0 chr13 117680069 117680157 -2064741 - L1MEc LINE L1 -4081 2315 2221 228 115 39 39 chr13 117680169 117680184 -2064714 + A-rich Low_complexity Low_complexity 1 15 -37 2360 81 10 0 chr13 117680184 117680479 -2064419 + AluSg SINE Alu 1 298 -12 2684 42 3 0 chr13 117680479 117680789 -2064109 + AluYa5 SINE Alu 1 311 0 228 115 39 39 chr13 117680789 117680824 -2064074 + A-rich Low_complexity Low_complexity 13 52 0 599 221 55 0 chr13 117680824 117680987 -2063911 + MLT1B LTR MaLR 95 266 -124 319 117 0 217 chr13 117680999 117681229 -2063669 + (AGGGGG)n Simple_repeat Simple_repeat 1 180 0 232 130 14 203 chr13 117681276 117681483 -2063415 + GA-rich Low_complexity Low_complexity 3 170 0 341 125 0 210 chr13 117681495 117681719 -2063179 + (GGA)n Simple_repeat Simple_repeat 3 179 0 371 87 0 230 chr13 117681729 117681959 -2062939 + (AGGGGG)n Simple_repeat Simple_repeat 2 178 0 1984 103 52 17 chr13 117682341 117682632 -2062266 - AluSx SINE Alu -1 311 11 2543 42 6 22 chr13 117682841 117683152 -2061746 + AluY SINE Alu 1 306 -5 2174 60 92 3 chr13 117683492 117683775 -2061123 + AluY SINE Alu 1 308 -3 326 287 66 33 chr13 117684363 117684426 -2060472 - L1MC5 LINE L1 -106 7855 7796 2193 117 6 25 chr13 117684426 117684743 -2060155 - AluSx SINE Alu 0 312 2 326 287 66 33 chr13 117684743 117684801 -2060097 - L1MC5 LINE L1 -165 7796 7730 1929 164 6 3 chr13 117684832 117685143 -2059755 + AluJo SINE Alu 1 312 0 243 182 0 0 chr13 117685145 117685189 -2059709 + L1MA7 LINE L1 5943 5986 -326 878 196 211 0 chr13 117685506 117685776 -2059122 - MER92B LTR ERV1 -309 327 1 2467 76 3 3 chr13 117686468 117686771 -2058127 + AluSp SINE Alu 1 303 -10 24 0 0 0 chr13 117688752 117688776 -2056122 + AT_rich Low_complexity Low_complexity 1 24 0 2093 93 76 3 chr13 117689130 117689419 -2055479 + AluSg SINE Alu 1 310 0 1182 243 50 13 chr13 117692306 117692623 -2052275 - MER58B DNA MER1_type -8 333 5 371 288 98 43 chr13 117692942 117693126 -2051772 - MIR SINE MIR 0 262 69 673 223 244 18 chr13 117693382 117693714 -2051184 - L1MA8 LINE L1 -16 6275 5869 2510 71 0 0 chr13 117694256 117694551 -2050347 - AluSg SINE Alu -15 295 1 2193 100 14 0 chr13 117694556 117694846 -2050052 - AluSg SINE Alu -16 294 1 2271 80 21 0 chr13 117695126 117695415 -2049483 - AluY SINE Alu -16 295 1 203 245 64 0 chr13 117696417 117696511 -2048387 + L2 LINE L2 431 530 -2784 2246 101 0 3 chr13 117697133 117697429 -2047469 - AluY SINE Alu -15 296 2 898 184 71 30 chr13 117697558 117697824 -2047074 + L1MA7 LINE L1 6015 6291 0 226 277 117 30 chr13 117698310 117698366 -2046532 - L1 LINE L1 -1721 4425 4375 1736 183 3 10 chr13 117698366 117698667 -2046231 + AluJo SINE Alu 1 299 -13 226 277 117 30 chr13 117698667 117698841 -2046057 - L1 LINE L1 -1771 4375 4175 2270 118 3 0 chr13 117698998 117699302 -2045596 + AluSx SINE Alu 1 305 -7 582 173 36 0 chr13 117699302 117699412 -2045486 - AluJo/FLAM SINE Alu -184 118 5 212 256 0 13 chr13 117701280 117701358 -2043540 + (TA)n Simple_repeat Simple_repeat 2 78 0 1969 139 13 3 chr13 117702014 117702315 -2042583 - AluJo SINE Alu -8 304 1 2339 86 10 0 chr13 117702607 117702898 -2042000 + AluSg SINE Alu 1 294 -16 2164 131 3 0 chr13 117704118 117704416 -2040482 - AluSx SINE Alu -13 299 1 2412 64 7 3 chr13 117704465 117704761 -2040137 - AluY SINE Alu -14 297 1 521 328 70 30 chr13 117704857 117705226 -2039672 + L1MB5 LINE L1 3658 4041 -2105 559 274 124 49 chr13 117705386 117705692 -2039206 + L1MB5 LINE L1 4062 4390 -1756 413 365 5 10 chr13 117705920 117706128 -2038770 + L2 LINE L2 3106 3312 -1 421 295 128 36 chr13 117706138 117706389 -2038509 + L1MB5 LINE L1 4427 4700 -1446 1752 117 109 4 chr13 117706395 117706651 -2038247 + AluJo SINE Alu 2 312 0 220 36 0 0 chr13 117706651 117706679 -2038219 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 486 300 116 34 chr13 117706863 117706957 -2037941 + L1MB5 LINE L1 5010 5095 -1051 2099 147 121 3 chr13 117706957 117707338 -2037560 + MSTB LTR MaLR 1 426 0 486 300 116 34 chr13 117707338 117707460 -2037438 + L1MB5 LINE L1 5095 5206 -940 2260 113 16 7 chr13 117707460 117707769 -2037129 + AluSx SINE Alu 1 312 0 486 300 116 34 chr13 117707769 117707904 -2036994 + L1MB5 LINE L1 5206 5391 -755 306 231 224 6 chr13 117707909 117708065 -2036833 - MIR SINE MIR -7 255 66 248 327 19 0 chr13 117708225 117708332 -2036566 + L1MB5 LINE L1 5607 5715 -406 530 205 111 8 chr13 117708514 117708631 -2036267 - FLAM_A SINE Alu -4 129 1 2532 173 23 3 chr13 117708756 117709248 -2035650 + L1MC1 LINE L1 5631 6129 -204 2141 90 11 0 chr13 117710078 117710346 -2034552 - AluY SINE Alu -18 293 23 540 369 112 19 chr13 117710918 117711330 -2033568 - L1ME LINE L1 -407 5714 5265 32 43 0 0 chr13 117711427 117711473 -2033425 + AT_rich Low_complexity Low_complexity 1 46 0 1286 194 37 22 chr13 117712138 117712406 -2032492 - AluJo SINE Alu -15 297 26 2041 139 126 16 chr13 117712828 117713209 -2031689 - MSTA LTR MaLR 0 428 6 182 250 194 0 chr13 117713555 117713627 -2031271 + L2 LINE L2 3169 3254 -18 226 364 26 13 chr13 117713627 117713781 -2031117 + L2 LINE L2 2890 3045 -227 361 210 70 83 chr13 117713798 117713955 -2030943 - L1MC5 LINE L1 -157 7804 7650 2619 207 35 10 chr13 117714139 117714209 -2030689 + L1MB5 LINE L1 4989 5056 -1118 1632 178 27 24 chr13 117714209 117714507 -2030391 - AluJb SINE Alu -13 299 1 2619 207 35 10 chr13 117714507 117715280 -2029618 + L1MB5 LINE L1 5056 5855 -319 993 245 96 0 chr13 117715447 117715708 -2029190 + L1MB5 LINE L1 5819 6104 -70 645 169 39 15 chr13 117715710 117715840 -2029058 - MER2 DNA MER2_type -5 340 208 226 94 0 0 chr13 117715838 117715870 -2029028 + MER39 LTR ERV1 399 430 -277 * 876 222 61 5 chr13 117715869 117716081 -2028817 - MER2 DNA MER2_type -121 224 1 242 192 123 14 chr13 117716082 117716155 -2028743 + L1MB4 LINE L1 6100 6180 0 * 1358 256 138 29 chr13 117716152 117716737 -2028161 + L1MC4 LINE L1 6859 7507 -535 2808 176 22 20 chr13 117717031 117717393 -2027505 + MER39 LTR ERV1 91 485 -222 2054 161 89 3 chr13 117717393 117717785 -2027113 + MSTB LTR MaLR 1 426 0 2808 176 22 20 chr13 117717785 117718006 -2026892 + MER39 LTR ERV1 485 704 -3 191 307 40 40 chr13 117718016 117718117 -2026781 + L2 LINE L2 2965 3065 -207 281 150 30 70 chr13 117719036 117719136 -2025762 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 1390 195 53 8 chr13 117719137 117719399 -2025499 - AluJo SINE Alu -32 280 7 1821 52 5 0 chr13 117719830 117720042 -2024856 - AluY SINE Alu -15 296 84 308 287 73 84 chr13 117720925 117721186 -2023712 - L1MC5 LINE L1 -30 7931 7674 1723 173 18 3 chr13 117721891 117722175 -2022723 - AluJb SINE Alu -22 290 3 1518 90 205 0 chr13 117722404 117722648 -2022250 - AluSc SINE Alu -3 296 3 222 265 8 60 chr13 117722749 117722866 -2022032 + C-rich Low_complexity Low_complexity 3 113 0 257 105 0 81 chr13 117722873 117722959 -2021939 + (CCCCG)n Simple_repeat Simple_repeat 1 79 0 23 78 0 0 chr13 117723096 117723147 -2021751 + GC_rich Low_complexity Low_complexity 1 51 0 2405 43 4 0 chr13 117723606 117723882 -2021016 + AluSg SINE Alu 2 278 -32 190 307 120 0 chr13 117724113 117724188 -2020710 + L2 LINE L2 3229 3312 -1 970 171 77 0 chr13 117724465 117724646 -2020252 - AluJb SINE Alu -8 304 110 1347 117 0 0 chr13 117724753 117724932 -2019966 - AluSg/x SINE Alu -3 307 129 2291 114 3 3 chr13 117724933 117725240 -2019658 - AluSx SINE Alu -2 310 4 201 94 0 0 chr13 117725867 117725899 -2018999 + (T)n Simple_repeat Simple_repeat 1 32 0 2227 116 3 0 chr13 117725978 117726281 -2018617 - AluSx SINE Alu -8 304 1 193 253 313 0 chr13 117727393 117727492 -2017406 - MIR SINE MIR -120 142 13 1119 123 55 21 chr13 117727522 117727741 -2017157 - AluJo SINE Alu -16 296 1 1669 224 96 26 chr13 117727747 117728378 -2016520 - L1ME1 LINE L1 -17 6147 5458 1410 257 52 36 chr13 117728388 117728900 -2015998 - L1ME1 LINE L1 -1246 4900 4376 2423 93 0 10 chr13 117728900 117729213 -2015685 - AluSx SINE Alu -2 310 1 1410 257 52 36 chr13 117729213 117729280 -2015618 - L1ME1 LINE L1 -1770 4376 4312 2264 99 7 7 chr13 117729645 117729947 -2014951 - AluSc SINE Alu -7 302 1 1138 68 0 0 chr13 117729947 117730080 -2014818 - AluSc SINE Alu -176 133 1 191 352 86 9 chr13 117730166 117730271 -2014627 - L2 LINE L2 -8 3305 3193 2295 102 0 0 chr13 117730544 117730854 -2014044 + AluSg SINE Alu 1 310 0 2498 61 7 0 chr13 117732283 117732578 -2012320 + AluSq SINE Alu 1 297 -16 1236 157 67 80 chr13 117733021 117733320 -2011578 - AluJb SINE Alu -6 296 2 872 305 64 28 chr13 117733327 117733871 -2011027 - L1MB3 LINE L1 0 6183 5620 359 265 60 74 chr13 117734429 117734440 -2010458 + L1MEd LINE L1 778 788 -5331 1947 139 0 7 chr13 117734440 117734721 -2010177 + AluJb SINE Alu 7 285 -27 359 265 60 74 chr13 117734721 117734924 -2009974 + L1MEd LINE L1 788 989 -5130 336 292 106 31 chr13 117734829 117734990 -2009908 - L1MCa LINE L1 -4362 2064 1892 * 307 199 5 73 chr13 117736499 117736690 -2008208 + (GTGTG)n Simple_repeat Simple_repeat 1 178 0 1324 187 0 9 chr13 117737702 117737932 -2006966 + AluJb SINE Alu 84 311 -1 608 153 8 65 chr13 117737945 117738069 -2006829 + FLAM_C SINE Alu 11 127 -16 1392 200 53 66 chr13 117738169 117738640 -2006258 - MLT1C LTR MaLR -2 465 1 1689 145 41 4 chr13 117738662 117738931 -2005967 - AluJb SINE Alu -33 279 1 2470 89 3 0 chr13 117742374 117742678 -2002220 - AluSx SINE Alu -7 305 1 26 30 0 0 chr13 117743070 117743103 -2001795 + AT_rich Low_complexity Low_complexity 1 33 0 213 333 48 14 chr13 117743419 117743566 -2001332 - MIR SINE MIR -79 183 32 2211 38 11 15 chr13 117744593 117744855 -2000043 - AluY SINE Alu -18 293 33 1714 129 50 7 chr13 117744876 117745155 -1999743 + AluSx SINE Alu 1 291 -21 684 130 23 46 chr13 117745158 117745289 -1999609 + FLAM_C SINE Alu 1 128 -5 274 228 20 10 chr13 117745440 117745541 -1999357 + L1M4 LINE L1 3162 3263 -2883 2197 106 3 0 chr13 117745543 117745827 -1999071 + AluSq SINE Alu 1 285 -28 243 103 0 0 chr13 117745827 117745866 -1999032 + (CATA)n Simple_repeat Simple_repeat 2 40 0 545 118 0 12 chr13 117745979 117746064 -1998834 + AluSg/x SINE Alu 214 297 -12 2438 87 0 3 chr13 117746301 117746613 -1998285 - AluSx SINE Alu -1 311 1 1718 163 0 11 chr13 117746614 117746891 -1998007 - AluJo SINE Alu -13 299 26 946 155 0 0 chr13 117746946 117747088 -1997810 + AluJb SINE Alu 146 287 -25 539 305 100 32 chr13 117747371 117747863 -1997035 + L1M4 LINE L1 4741 5265 -881 2442 100 0 0 chr13 117747900 117748201 -1996697 + AluSq SINE Alu 5 305 -8 1850 162 10 3 chr13 117749796 117750098 -1994800 - AluJo SINE Alu -8 304 1 2245 205 79 13 chr13 117750790 117751017 -1993881 + L1MA4 LINE L1 5589 5799 -501 2210 123 3 0 chr13 117751017 117751317 -1993581 + AluSq SINE Alu 1 301 -12 2245 205 79 13 chr13 117751317 117751645 -1993253 + L1MA4 LINE L1 5799 6181 -119 1307 102 0 0 chr13 117751665 117751832 -1993066 - AluSg/x SINE Alu -9 303 137 496 191 0 0 chr13 117751832 117751937 -1992961 + L1MA3 LINE L1 6201 6305 0 2408 61 3 14 chr13 117751988 117752284 -1992614 + AluY SINE Alu 1 293 -18 2000 119 0 0 chr13 117752974 117753234 -1991664 + AluSx SINE Alu 1 260 -52 324 0 0 0 chr13 117753234 117753270 -1991628 + (CA)n Simple_repeat Simple_repeat 2 37 0 324 0 0 0 chr13 117753270 117753306 -1991592 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2006 134 41 0 chr13 117753322 117753614 -1991284 + AluSg SINE Alu 5 308 -2 351 325 49 64 chr13 117754047 117754392 -1990506 - L1MC5 LINE L1 -887 7074 6735 495 210 32 0 chr13 117754655 117754877 -1990021 + (TG)n Simple_repeat Simple_repeat 1 229 0 242 276 41 41 chr13 117754878 117754976 -1989922 + L1MC4 LINE L1 7905 8002 -40 690 142 0 0 chr13 117755015 117755121 -1989777 - AluJb SINE Alu -205 107 2 2460 96 0 3 chr13 117755152 117755465 -1989433 + AluSx SINE Alu 1 312 0 2279 95 9 25 chr13 117757477 117757794 -1987104 - AluSq SINE Alu -1 312 1 1699 108 0 9 chr13 117758336 117758558 -1986340 + AluJb SINE Alu 69 288 -24 2221 106 0 10 chr13 117759612 117759904 -1984994 + AluSg SINE Alu 1 289 -21 598 233 13 19 chr13 117760028 117760187 -1984711 - L1MB3 LINE L1 0 6183 6026 789 243 8 2 chr13 117760194 117760388 -1984510 - L1MB2 LINE L1 -312 5856 5661 2359 92 3 3 chr13 117760398 117760701 -1984197 - AluSx SINE Alu -9 303 1 2469 67 0 10 chr13 117761960 117762260 -1982638 + AluSx SINE Alu 1 297 -15 2167 134 45 0 chr13 117763050 117763424 -1981474 - L1PA11 LINE L1 -1 6173 5783 23 0 0 0 chr13 117765573 117765596 -1979302 + GC_rich Low_complexity Low_complexity 1 23 0 1236 164 5 5 chr13 117765915 117766110 -1978788 - AluJo SINE Alu -35 277 83 278 188 47 0 chr13 117767732 117767796 -1977102 - MER105 DNA DNA -58 146 80 1698 161 38 14 chr13 117769101 117769393 -1975505 + AluJb SINE Alu 2 300 -12 576 159 225 0 chr13 117770047 117770198 -1974700 + MER21A LTR ERV1 21 205 -726 605 94 0 42 chr13 117770198 117770294 -1974604 - AluSg/x SINE Alu -12 298 207 2513 57 3 3 chr13 117770369 117770668 -1974230 + AluY SINE Alu 1 299 -12 2215 127 0 0 chr13 117770970 117771269 -1973629 - AluSx SINE Alu -13 299 1 2093 93 76 3 chr13 117771423 117771712 -1973186 + AluSg SINE Alu 1 310 0 1182 243 50 13 chr13 117774503 117774820 -1970078 - MER58B DNA MER1_type -8 333 5 371 288 98 43 chr13 117775139 117775323 -1969575 - MIR SINE MIR 0 262 69 673 223 244 18 chr13 117775579 117775911 -1968987 - L1MA8 LINE L1 -16 6275 5869 2510 71 0 0 chr13 117776453 117776748 -1968150 - AluSg SINE Alu -15 295 1 2272 105 7 0 chr13 117776753 117777047 -1967851 - AluSx SINE Alu -16 296 1 2014 155 7 0 chr13 117777593 117777890 -1967008 + AluJo SINE Alu 1 299 -13 21 36 0 0 chr13 117778281 117778309 -1966589 + AT_rich Low_complexity Low_complexity 1 28 0 2204 117 27 0 chr13 117778369 117778669 -1966229 + AluSp SINE Alu 1 308 -5 1862 166 0 13 chr13 117778678 117778979 -1965919 + AluSx SINE Alu 1 297 -15 1303 142 19 19 chr13 117779012 117779223 -1965675 - AluJo SINE Alu -5 307 97 326 318 36 18 chr13 117779420 117779530 -1965368 + L1ME LINE L1 5724 5835 -286 2215 133 0 0 chr13 117779536 117779844 -1965054 + AluSx SINE Alu 1 308 -4 2561 71 0 0 chr13 117779855 117780165 -1964733 + AluY SINE Alu 1 310 -1 2160 118 17 0 chr13 117780621 117780918 -1963980 - AluSx SINE Alu -10 302 1 2320 98 7 10 chr13 117782038 117782345 -1962553 + AluSq SINE Alu 2 307 -6 1759 132 76 31 chr13 117782912 117783201 -1961697 - AluSx SINE Alu -10 302 1 460 233 261 30 chr13 117784013 117784216 -1960682 - MIR3 SINE MIR -5 257 3 752 161 0 15 chr13 117784265 117784395 -1960503 + FLAM_C SINE Alu 1 128 -5 28 29 0 0 chr13 117784395 117784430 -1960468 + AT_rich Low_complexity Low_complexity 1 35 0 2150 95 7 18 chr13 117784525 117784810 -1960088 + AluSx SINE Alu 21 302 -10 2388 84 3 3 chr13 117784832 117785140 -1959758 + AluSx SINE Alu 1 308 -4 234 0 0 0 chr13 117785302 117785328 -1959570 + (TA)n Simple_repeat Simple_repeat 2 27 0 2059 118 10 26 chr13 117785328 117785634 -1959264 - AluSx SINE Alu -11 301 1 566 161 136 8 chr13 117785639 117785757 -1959141 - FLAM_C SINE Alu -5 138 6 2129 101 10 42 chr13 117786140 117786448 -1958450 - AluSc SINE Alu -11 298 1 2356 107 0 16 chr13 117786456 117786774 -1958124 - AluSq SINE Alu 0 313 1 2275 102 10 0 chr13 117787109 117787404 -1957494 + AluSg SINE Alu 1 298 -12 1937 146 10 0 chr13 117787410 117787698 -1957200 + AluSg SINE Alu 1 291 -19 2252 102 3 0 chr13 117787818 117788112 -1956786 - AluSg SINE Alu -15 295 1 219 69 0 0 chr13 117789479 117789508 -1955390 + (CAG)n Simple_repeat Simple_repeat 2 30 0 23 92 0 0 chr13 117789568 117789633 -1955265 + GC_rich Low_complexity Low_complexity 1 65 0 2431 61 7 0 chr13 117790417 117790712 -1954186 - AluSx SINE Alu -15 297 1 3343 188 43 4 chr13 117790820 117791510 -1953388 + LTR62 LTR ERVK 1 717 -2 343 231 56 9 chr13 117791567 117791675 -1953223 + MER34C LTR ERV1 473 585 0 1299 149 15 116 chr13 117792124 117792527 -1952371 - AluJb SINE Alu 0 369 1 2730 170 39 34 chr13 117792607 117793171 -1951727 - LTR24B LTR ERV1 -1 575 9 1254 216 54 14 chr13 117793376 117793654 -1951244 - AluJb SINE Alu -23 289 1 262 226 19 123 chr13 117793672 117793740 -1951158 - L1MC5 LINE L1 -1162 6799 6744 2154 126 0 3 chr13 117793740 117794041 -1950857 + AluSx SINE Alu 1 300 -12 262 226 19 123 chr13 117794041 117794078 -1950820 - L1MC5 LINE L1 -1217 6744 6705 1551 209 87 32 chr13 117794078 117794152 -1950746 - MER65C LTR ERV1 0 461 393 2250 197 29 4 chr13 117794152 117794608 -1950290 - LTR24 LTR ERV1 0 467 1 1551 209 87 32 chr13 117794608 117794968 -1949930 - MER65C LTR ERV1 -68 393 3 317 354 110 47 chr13 117794989 117795117 -1949781 - L1MC4a LINE L1 -1139 6669 6550 2397 91 0 7 chr13 117795117 117795415 -1949483 - AluSp SINE Alu -17 296 1 317 354 110 47 chr13 117795415 117795733 -1949165 - L1MC4a LINE L1 -1258 6550 6195 2051 128 0 17 chr13 117795756 117796053 -1948845 - AluJo SINE Alu 0 312 21 585 139 0 0 chr13 117796053 117796139 -1948759 - AluJ/FLAM SINE Alu -225 87 2 248 28 56 0 chr13 117796162 117796198 -1948700 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 225 229 49 0 chr13 117796207 117796268 -1948630 + L1MC3 LINE L1 5894 5957 -2085 359 289 88 69 chr13 117796432 117796692 -1948206 + L1MC3 LINE L1 6020 6284 -1501 932 278 59 43 chr13 117796714 117796851 -1948047 - MER34B LTR ERV1 -4 561 428 1824 167 100 8 chr13 117796851 117797240 -1947658 - MSTB LTR MaLR -1 425 1 932 278 59 43 chr13 117797240 117797608 -1947290 - MER34B LTR ERV1 -137 428 22 1870 284 71 38 chr13 117797608 117798274 -1946624 + L1MD3 LINE L1 6346 7049 -946 3609 105 0 4 chr13 117798274 117798787 -1946111 + MER9 LTR ERVK 1 511 0 1870 284 71 38 chr13 117798787 117798996 -1945902 + L1MD3 LINE L1 7049 7250 -745 1112 253 42 0 chr13 117799120 117799432 -1945466 + L1MD3 LINE L1 7590 7914 -81 1393 120 167 50 chr13 117799586 117799788 -1945110 - AluSx SINE Alu -10 302 62 2364 100 0 3 chr13 117799788 117800099 -1944799 - AluSg SINE Alu 0 310 1 1393 120 167 50 chr13 117800099 117800154 -1944744 - AluSx SINE Alu -250 62 15 1228 181 74 11 chr13 117800164 117800434 -1944464 - L1MA5A LINE L1 0 6297 6011 376 241 120 79 chr13 117801171 117801247 -1943651 - L1ME LINE L1 -334 5787 5716 1967 173 0 0 chr13 117801247 117801542 -1943356 + AluJo SINE Alu 1 295 -17 2186 131 0 16 chr13 117801544 117801858 -1943040 + AluSg SINE Alu 1 309 -1 376 241 120 79 chr13 117801858 117801994 -1942904 - L1ME LINE L1 -405 5716 5563 2303 104 7 0 chr13 117802463 117802770 -1942128 + AluSc SINE Alu 1 309 0 2095 140 10 0 chr13 117803137 117803444 -1941454 - AluSx SINE Alu -2 310 1 2508 253 46 41 chr13 117803466 117804135 -1940763 - L1ME1 LINE L1 -5 6230 5566 687 186 8 0 chr13 117804135 117804264 -1940634 - FLAM_A SINE Alu 0 133 4 2508 253 46 41 chr13 117804264 117804547 -1940351 - L1ME1 LINE L1 -669 5566 5271 2335 90 13 26 chr13 117804547 117804858 -1940040 - AluY SINE Alu -4 307 1 2508 253 46 41 chr13 117804858 117804895 -1940003 - L1ME1 LINE L1 -964 5271 5236 1990 142 6 13 chr13 117804904 117805215 -1939683 - AluJb SINE Alu -3 309 1 1527 156 49 40 chr13 117805215 117805532 -1939366 + MER4D LTR ERV1 541 863 -40 1011 58 41 12 chr13 117805532 117805704 -1939194 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 577 83 12 12 chr13 117805704 117805788 -1939110 - FRAM SINE Alu -30 146 63 242 48 48 0 chr13 117805790 117805832 -1939066 + MER4D LTR ERV1 858 901 -2 2019 157 3 3 chr13 117805851 117806163 -1938735 - AluJb SINE Alu 0 312 1 1216 200 107 16 chr13 117806163 117806548 -1938350 - L1ME1 LINE L1 -1273 4942 4523 1697 209 25 3 chr13 117806549 117806903 -1937995 - MLT1A1 LTR MaLR 0 365 1 501 196 23 161 chr13 117806905 117807117 -1937781 - L1ME1 LINE L1 -3120 3095 2946 2482 88 0 3 chr13 117807117 117807423 -1937475 - AluSg SINE Alu -5 305 1 501 196 23 161 chr13 117807423 117807552 -1937346 - L1ME1 LINE L1 -3269 2946 2801 559 282 71 43 chr13 117808040 117808434 -1936464 - L1ME1 LINE L1 -3469 2746 2342 1942 114 31 14 chr13 117808450 117808740 -1936158 + AluSx SINE Alu 1 295 -17 1556 139 7 25 chr13 117808741 117809015 -1935883 - AluJo SINE Alu -43 269 1 2056 90 0 11 chr13 117809822 117810101 -1934797 - AluSg SINE Alu -21 289 14 491 217 58 96 chr13 117810438 117810488 -1934410 - L1ME1 LINE L1 -3994 2402 2352 1392 180 40 4 chr13 117810488 117810760 -1934138 + AluJb SINE Alu 1 282 -30 491 217 58 96 chr13 117810760 117810949 -1933949 - L1ME1 LINE L1 -4044 2352 2172 1993 121 3 0 chr13 117810964 117811262 -1933636 + AluSc SINE Alu 1 299 -10 2496 140 93 51 chr13 117811278 117811829 -1933069 + MER4B LTR ERV1 1 574 -36 279 242 53 61 chr13 117811857 117811989 -1932909 - L1ME1 LINE L1 -4241 2155 2025 374 306 150 19 chr13 117812113 117812472 -1932426 - L1ME1 LINE L1 -4433 1963 1558 421 269 149 8 chr13 117812577 117812711 -1932187 - MIR SINE MIR -44 218 66 1714 160 7 3 chr13 117813536 117813823 -1931075 - AluJb SINE Alu -20 292 5 2292 195 25 48 chr13 117813854 117814376 -1930522 - LTR26B LTR ERV1 -19 512 3 37 76 0 0 chr13 117814398 117814477 -1930421 + AT_rich Low_complexity Low_complexity 1 79 0 772 258 126 31 chr13 117814633 117815055 -1929843 + HAL1 LINE L1 1244 1705 -802 789 102 136 0 chr13 117815067 117815185 -1929713 + AluSq/x SINE Alu 2 135 -177 1698 136 59 7 chr13 117815185 117815472 -1929426 + AluSg SINE Alu 1 302 -8 387 177 0 63 chr13 117815621 117815700 -1929198 + 7SLRNA srpRNA srpRNA 238 311 -9 1060 75 0 0 chr13 117815726 117815859 -1929039 - AluY SINE Alu -178 133 1 1763 156 20 3 chr13 117815882 117816183 -1928715 - AluJo SINE Alu -6 306 1 1900 93 0 12 chr13 117816208 117816466 -1928432 + AluSg SINE Alu 1 255 -55 1862 148 7 0 chr13 117816495 117816785 -1928113 + AluSx SINE Alu 1 292 -20 2097 102 7 0 chr13 117816840 117817134 -1927764 - AluSg SINE Alu -14 296 1 2119 80 21 0 chr13 117817414 117817703 -1927195 - AluY SINE Alu -16 295 1 205 245 64 0 chr13 117818705 117818799 -1926099 + L2 LINE L2 431 530 -2784 2090 101 0 3 chr13 117819421 117819717 -1925181 - AluY SINE Alu -15 296 2 948 181 71 30 chr13 117819846 117820112 -1924786 + L1MA7 LINE L1 6015 6291 0 234 264 121 35 chr13 117820598 117820654 -1924244 - L1 LINE L1 -1721 4425 4375 1584 183 3 10 chr13 117820654 117820955 -1923943 + AluJo SINE Alu 1 299 -13 234 264 121 35 chr13 117820955 117821129 -1923769 - L1 LINE L1 -1771 4375 4175 2106 114 3 0 chr13 117821286 117821584 -1923314 + AluSx SINE Alu 1 299 -13 609 173 36 0 chr13 117821590 117821700 -1923198 - FLAM_C SINE Alu -15 118 5 212 256 0 13 chr13 117823568 117823646 -1921252 + (TA)n Simple_repeat Simple_repeat 2 78 0 1809 139 13 3 chr13 117824302 117824603 -1920295 - AluJo SINE Alu -8 304 1 2184 86 10 0 chr13 117824895 117825186 -1919712 + AluSg SINE Alu 1 294 -16 2004 131 3 0 chr13 117826406 117826704 -1918194 - AluSx SINE Alu -13 299 1 2254 64 7 3 chr13 117826753 117827049 -1917849 - AluY SINE Alu -14 297 1 256 271 85 51 chr13 117827231 117827408 -1917490 + L1MB5 LINE L1 3751 3933 -2213 258 245 137 62 chr13 117827674 117827980 -1916918 + L1MB5 LINE L1 4062 4390 -1756 436 319 140 29 chr13 117828137 117828416 -1916482 + L2 LINE L2 3003 3312 -1 545 280 170 48 chr13 117828426 117828683 -1916215 + L1MB5 LINE L1 4427 4651 -1495 1613 117 109 4 chr13 117828683 117828967 -1915931 + AluJo SINE Alu 2 312 0 545 280 170 48 chr13 117828967 117829245 -1915653 + L1MB5 LINE L1 4651 4894 -1252 2209 147 121 3 chr13 117829245 117829626 -1915272 + MSTB LTR MaLR 1 426 0 545 280 170 48 chr13 117829626 117829748 -1915150 + L1MB5 LINE L1 4894 5000 -1146 2096 111 23 7 chr13 117829748 117830055 -1914843 + AluSx SINE Alu 1 312 0 545 280 170 48 chr13 117830055 117830192 -1914706 + L1MB5 LINE L1 5000 5391 -755 358 224 224 6 chr13 117830197 117830353 -1914545 - MIR SINE MIR -7 255 66 251 309 21 0 chr13 117830523 117830620 -1914278 + L1MB5 LINE L1 5617 5715 -406 555 205 111 8 chr13 117830802 117830919 -1913979 - FLAM_A SINE Alu -4 129 1 2633 173 23 3 chr13 117831044 117831536 -1913362 + L1MC1 LINE L1 5631 6129 -204 1999 90 11 0 chr13 117832366 117832634 -1912264 - AluY SINE Alu -18 293 23 520 361 101 22 chr13 117833256 117833613 -1911285 - L1ME LINE L1 -467 5654 5270 32 43 0 0 chr13 117833715 117833761 -1911137 + AT_rich Low_complexity Low_complexity 1 46 0 1145 194 37 22 chr13 117834426 117834694 -1910204 - AluJo SINE Alu -15 297 26 2141 139 126 16 chr13 117835116 117835497 -1909401 - MSTA LTR MaLR 0 428 6 200 293 190 39 chr13 117835710 117835915 -1908983 + L2 LINE L2 3019 3254 -18 243 364 26 13 chr13 117835915 117836069 -1908829 + L2 LINE L2 2890 3045 -227 377 210 70 83 chr13 117836086 117836243 -1908655 - L1MC5 LINE L1 -157 7804 7650 2687 207 35 10 chr13 117836427 117836497 -1908401 + L1MB5 LINE L1 4989 5056 -1118 1481 178 27 24 chr13 117836497 117836795 -1908103 - AluJb SINE Alu -13 299 1 2687 207 35 10 chr13 117836795 117837568 -1907330 + L1MB5 LINE L1 5056 5855 -319 1016 241 96 0 chr13 117837735 117837996 -1906902 + L1MB5 LINE L1 5819 6104 -70 676 169 39 15 chr13 117837998 117838128 -1906770 - MER2 DNA MER2_type -5 340 208 236 94 0 0 chr13 117838126 117838158 -1906740 + MER39 LTR ERV1 399 430 -277 * 915 222 61 5 chr13 117838157 117838369 -1906529 - MER2 DNA MER2_type -121 224 1 253 192 123 14 chr13 117838370 117838443 -1906455 + L1MB4 LINE L1 6100 6180 0 * 1390 256 138 29 chr13 117838440 117839025 -1905873 + L1MC4 LINE L1 6859 7507 -535 2928 176 22 20 chr13 117839319 117839681 -1905217 + MER39 LTR ERV1 91 485 -222 2156 158 89 3 chr13 117839681 117840073 -1904825 + MSTB LTR MaLR 1 426 0 2928 176 22 20 chr13 117840073 117840294 -1904604 + MER39 LTR ERV1 485 704 -3 217 307 40 40 chr13 117840304 117840405 -1904493 + L2 LINE L2 2965 3065 -207 281 150 30 70 chr13 117841324 117841424 -1903474 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 1254 195 53 8 chr13 117841425 117841687 -1903211 - AluJo SINE Alu -32 280 7 1709 52 5 0 chr13 117842118 117842330 -1902568 - AluY SINE Alu -15 296 84 302 284 37 74 chr13 117843213 117843375 -1901523 - L1MC5 LINE L1 -30 7931 7776 1557 173 18 3 chr13 117844179 117844463 -1900435 - AluJb SINE Alu -22 290 3 1617 89 203 0 chr13 117844692 117844938 -1899960 - AluSc SINE Alu -3 296 1 2178 106 0 3 chr13 117845160 117845461 -1899437 + AluSg1 SINE Alu 1 300 -9 450 242 71 43 chr13 117845967 117846178 -1898720 - L1MD2 LINE L1 -1 6358 6142 526 188 149 39 chr13 117846215 117846396 -1898502 - L1MD1 LINE L1 -188 6054 5854 433 241 118 15 chr13 117846616 117846811 -1898087 - MER20 DNA MER1_type -3 216 2 27 29 0 0 chr13 117848381 117848415 -1896483 + AT_rich Low_complexity Low_complexity 1 34 0 1086 197 70 63 chr13 117848520 117848819 -1896079 - AluJo SINE Alu -1 301 1 266 364 85 23 chr13 117848938 117849067 -1895831 + MIR SINE MIR 48 184 -78 2371 66 0 3 chr13 117850981 117851284 -1893614 - AluY SINE Alu -9 302 1 352 262 5 32 chr13 117854530 117854961 -1889937 + (TGG)n Simple_repeat Simple_repeat 1 419 0 222 309 24 0 chr13 117854962 117855046 -1889852 + (TAG)n Simple_repeat Simple_repeat 2 87 0 599 177 21 43 chr13 117855221 117855362 -1889536 + MIR SINE MIR 28 165 -97 1831 139 0 7 chr13 117855904 117856212 -1888686 + AluJo SINE Alu 5 310 0 384 265 174 0 chr13 117856253 117856385 -1888513 + MIR SINE MIR 93 247 -15 263 325 119 20 chr13 117856540 117856691 -1888207 - L2 LINE L2 -1312 2002 1837 2197 50 30 27 chr13 117857835 117858134 -1886764 - AluY SINE Alu -11 300 1 2252 77 0 13 chr13 117859050 117859349 -1885549 - AluSg SINE Alu -15 295 1 1799 191 37 11 chr13 117859436 117859787 -1885111 + MLT1A1 LTR MaLR 6 365 0 570 216 45 0 chr13 117860118 117860229 -1884669 - FLAM_C SINE Alu -26 117 2 322 293 89 8 chr13 117862169 117862292 -1882606 + MIR SINE MIR 110 242 -20 2408 51 0 3 chr13 117862607 117862901 -1881997 - AluY SINE Alu -17 294 2 1946 108 7 14 chr13 117863276 117863583 -1881315 + AluSp SINE Alu 1 305 0 1201 170 128 23 chr13 117864061 117864326 -1880572 - AluJb SINE Alu -19 293 1 2192 100 3 0 chr13 117865097 117865406 -1879492 + AluSg SINE Alu 1 310 0 304 376 53 0 chr13 117865457 117865590 -1879308 + L2 LINE L2 3173 3312 -1 254 281 0 12 chr13 117866874 117866956 -1877942 - MIR3 SINE MIR -24 184 104 722 284 129 29 chr13 117867228 117867640 -1877258 + MLT1E LTR MaLR 141 593 0 2085 102 0 3 chr13 117868725 117869018 -1875880 - AluSx SINE Alu -20 292 1 656 188 0 0 chr13 117872320 117872437 -1872461 + FLAM_C SINE Alu 1 117 -26 519 279 63 11 chr13 117873484 117873674 -1871224 + L1ME1 LINE L1 43 242 -6154 1176 136 0 0 chr13 117873689 117873865 -1871033 - AluJb SINE Alu -134 178 3 634 256 50 5 chr13 117873868 117874067 -1870831 + L1ME1 LINE L1 4606 4813 -1402 2347 217 64 78 chr13 117874085 117874170 -1870728 + L1ME1 LINE L1 4925 5010 -1225 2174 99 0 7 chr13 117874170 117874472 -1870426 - AluSx SINE Alu -12 300 1 2347 217 64 78 chr13 117874472 117875288 -1869610 + L1ME1 LINE L1 5010 5792 -443 2183 102 0 0 chr13 117875288 117875592 -1869306 + AluSq SINE Alu 1 304 -9 2347 217 64 78 chr13 117875592 117875985 -1868913 + L1ME1 LINE L1 5792 6189 -46 457 201 134 0 chr13 117876039 117876173 -1868725 + L1ME4a LINE L1 5969 6120 -1 251 139 46 19 chr13 117877148 117877256 -1867642 + (CCCCG)n Simple_repeat Simple_repeat 3 113 0 23 0 0 0 chr13 117878016 117878039 -1866859 + GC_rich Low_complexity Low_complexity 1 23 0 301 341 211 11 chr13 117878821 117879082 -1865816 - L2 LINE L2 -728 2586 2274 228 282 114 40 chr13 117879784 117879933 -1864965 - L2 LINE L2 -1038 2276 2117 240 299 122 9 chr13 117880429 117880536 -1864362 + MIR SINE MIR 21 139 -123 2899 177 125 15 chr13 117880796 117881451 -1863447 - L1MB5 LINE L1 -16 6158 5432 1118 233 88 59 chr13 117883952 117884407 -1860491 - L1MC4a LINE L1 -1747 6061 5594 750 260 47 31 chr13 117884534 117884792 -1860106 - L1ME LINE L1 -484 5678 5417 2211 86 0 16 chr13 117884916 117885231 -1859667 - AluY SINE Alu 0 311 2 277 245 53 62 chr13 117885419 117885627 -1859271 - L1MC4a LINE L1 -1868 5940 5735 718 112 40 16 chr13 117885824 117885949 -1858949 - FLAM_C SINE Alu -3 140 13 673 25 0 0 chr13 117885988 117886069 -1858829 + AluYb8 SINE Alu 233 313 -5 357 244 41 57 chr13 117886920 117887043 -1857855 + MER5B DNA MER1_type 58 178 0 565 180 36 9 chr13 117887361 117887472 -1857426 - MLT2B2 LTR ERVL 0 515 402 946 202 77 0 chr13 117887477 117887685 -1857213 - MLT2B2 LTR ERVL -290 225 2 22 0 0 0 chr13 117888035 117888057 -1856841 + AT_rich Low_complexity Low_complexity 1 22 0 1852 128 0 11 chr13 117888057 117888338 -1856560 - AluSx SINE Alu -30 282 5 648 115 0 0 chr13 117891075 117891171 -1853727 - AluSg/x SINE Alu -10 300 205 244 209 15 45 chr13 117892158 117892225 -1852673 - Charlie1a DNA MER1_type 0 1455 1391 1222 254 150 46 chr13 117892252 117893038 -1851860 + L1MDa LINE L1 56 1323 -5217 1661 194 86 57 chr13 117893038 117893604 -1851294 - Charlie1a DNA MER1_type -42 1413 831 1464 146 89 100 chr13 117893604 117893973 -1850925 - MLT1A1 LTR MaLR 0 365 1 2477 238 68 53 chr13 117893976 117894495 -1850403 - Charlie1a DNA MER1_type -1941 820 283 1581 177 17 7 chr13 117894495 117894789 -1850109 - AluJo SINE Alu -15 297 1 2477 238 68 53 chr13 117894789 117895063 -1849835 - Charlie1a DNA MER1_type -2478 283 15 1303 194 0 121 chr13 117895430 117895770 -1849128 + AluJo SINE Alu 1 299 -3 1079 246 139 56 chr13 117895951 117896710 -1848188 - L1MDa LINE L1 -4437 2284 1429 2269 99 0 0 chr13 117896710 117897022 -1847876 - AluSx SINE Alu 0 312 1 1079 246 139 56 chr13 117897022 117897186 -1847712 - L1MDa LINE L1 -5292 1429 1280 400 79 63 0 chr13 117897301 117897364 -1847534 - MSTB1 LTR MaLR 0 432 366 2013 154 63 43 chr13 117897432 117897827 -1847071 - MSTB1 LTR MaLR -29 403 1 415 276 25 18 chr13 117898080 117898243 -1846655 - MER41B LTR ERV1 -205 430 267 1222 191 67 63 chr13 117898837 117899427 -1845471 + L1M4 LINE L1 5060 5642 -536 255 310 81 11 chr13 117899627 117899714 -1845184 - MIR SINE MIR -104 158 66 1003 254 40 0 chr13 117899910 117900162 -1844736 - MER7A DNA MER2_type -48 298 39 378 269 88 12 chr13 117900483 117900643 -1844255 - L1ME2 LINE L1 -110 6054 5883 784 138 216 6 chr13 117900712 117900879 -1844019 - AluSg/x SINE Alu 0 309 108 23 0 0 0 chr13 117901145 117901168 -1843730 + AT_rich Low_complexity Low_complexity 1 23 0 430 282 159 53 chr13 117901407 117901634 -1843264 - MIR SINE MIR -2 260 10 2217 56 45 3 chr13 117903975 117904263 -1840635 + AluY SINE Alu 1 300 -11 284 304 16 0 chr13 117906140 117906265 -1838633 - HAL1 LINE L1 -84 2423 2297 297 229 0 0 chr13 117907369 117907430 -1837468 - HsTC2 DNA Tc2 -1809 89 29 1518 175 98 19 chr13 117908011 117908326 -1836572 + MER2 DNA MER2_type 5 344 0 904 201 59 139 chr13 117909093 117909327 -1835571 - MER47A DNA MER2_type -1959 364 170 2506 81 3 0 chr13 117909327 117909634 -1835264 + AluSp SINE Alu 2 309 -4 904 201 59 139 chr13 117909634 117909772 -1835126 - MER47A DNA MER2_type -2153 170 22 1099 241 62 40 chr13 117909777 117909994 -1834904 - MLT1B LTR MaLR -3 387 157 1830 170 0 3 chr13 117909994 117910283 -1834615 - AluJo SINE Alu -24 288 1 1099 241 62 40 chr13 117910283 117910438 -1834460 - MLT1B LTR MaLR -233 157 7 1051 142 279 0 chr13 117911655 117911902 -1832996 - THE1C LTR MaLR -45 330 15 1614 182 42 3 chr13 117912051 117912337 -1832561 + AluJo SINE Alu 1 297 -15 2350 79 0 36 chr13 117912582 117912886 -1832012 - AluSg SINE Alu -15 295 3 745 233 87 8 chr13 117913625 117913923 -1830975 - MLT1A2 LTR MaLR 0 374 1 2012 156 3 3 chr13 117915613 117915915 -1828983 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr13 117916512 117916535 -1828363 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 4857 273 82 42 chr13 117916651 117917807 -1827091 + L1MEc LINE L1 37 1145 -5251 2067 156 0 0 chr13 117917807 117918102 -1826796 + AluJo SINE Alu 1 295 -17 4857 273 82 42 chr13 117918102 117919317 -1825581 + L1MEc LINE L1 1145 2503 -3893 649 195 166 0 chr13 117920490 117920695 -1824203 + Charlie5 DNA MER1_type 2347 2585 -27 2170 134 0 0 chr13 117921005 117921310 -1823588 + AluSx SINE Alu 1 305 -7 2581 68 0 3 chr13 117922559 117922869 -1822029 + AluSc SINE Alu 1 309 0 370 314 54 5 chr13 117923029 117923214 -1821684 - L2 LINE L2 -873 2441 2248 273 328 16 24 chr13 117923836 117923961 -1820937 + G-rich Low_complexity Low_complexity 2 125 0 254 193 27 75 chr13 117924049 117924236 -1820662 + GA-rich Low_complexity Low_complexity 2 179 0 266 187 27 75 chr13 117924259 117924446 -1820452 + GA-rich Low_complexity Low_complexity 2 179 0 253 361 0 16 chr13 117924431 117924614 -1820284 + G-rich Low_complexity Low_complexity 1 180 0 * 274 192 39 55 chr13 117924721 117924903 -1819995 + GA-rich Low_complexity Low_complexity 2 180 0 182 186 271 0 chr13 117926427 117926486 -1818412 + MIR SINE MIR 123 197 -65 230 211 0 67 chr13 117927683 117927773 -1817125 + C-rich Low_complexity Low_complexity 4 87 0 229 195 13 26 chr13 117928463 117928540 -1816358 + GA-rich Low_complexity Low_complexity 2 77 0 543 258 60 0 chr13 117928551 117928702 -1816196 - MER58A DNA MER1_type 0 167 8 2123 111 58 14 chr13 117928721 117929080 -1815818 - THE1C LTR MaLR 0 375 1 455 310 211 8 chr13 117929082 117929576 -1815322 - L2 LINE L2 -512 2802 2209 1376 183 111 27 chr13 117930069 117930375 -1814523 - MLT1A1 LTR MaLR -2 363 25 1673 144 112 21 chr13 117930375 117930715 -1814183 + THE1C LTR MaLR 5 375 0 1376 183 111 27 chr13 117930715 117930742 -1814156 - MLT1A1 LTR MaLR -340 25 2 245 352 62 11 chr13 117931273 117931449 -1813449 - L1MEd LINE L1 -5470 649 465 1726 155 61 68 chr13 117931566 117931960 -1812938 - MSTD LTR MaLR -5 391 1 211 302 18 41 chr13 117932625 117932794 -1812104 + GA-rich Low_complexity Low_complexity 2 166 0 231 124 41 31 chr13 117932947 117933044 -1811854 + (CCCCG)n Simple_repeat Simple_repeat 4 101 0 250 244 78 11 chr13 117933211 117933301 -1811597 - L1MB4 LINE L1 0 6180 6085 229 186 0 29 chr13 117934140 117934242 -1810656 + (TCTCTG)n Simple_repeat Simple_repeat 4 102 0 837 153 0 0 chr13 117934301 117934477 -1810421 + CT-rich Low_complexity Low_complexity 1 176 0 231 273 56 42 chr13 117936817 117936960 -1807938 - MER5B DNA MER1_type -33 145 1 242 277 71 18 chr13 117938226 117938338 -1806560 - L1ME4a LINE L1 -3 6118 6001 322 278 91 20 chr13 117938505 117938657 -1806241 + Charlie5 DNA MER1_type 2335 2475 -110 411 73 0 0 chr13 117938657 117938712 -1806186 + (TA)n Simple_repeat Simple_repeat 2 56 0 2417 94 0 3 chr13 117938712 117939010 -1805888 - AluSx SINE Alu -15 297 1 322 278 91 20 chr13 117939010 117939054 -1805844 + Charlie5 DNA MER1_type 2474 2546 -39 263 197 16 16 chr13 117939357 117939418 -1805480 + CT-rich Low_complexity Low_complexity 2 62 0 215 264 0 0 chr13 117940858 117940911 -1803987 + L2 LINE L2 3250 3302 -11 2037 126 36 34 chr13 117941131 117941488 -1803410 + THE1B LTR MaLR 7 364 0 531 216 68 0 chr13 117941488 117941630 -1803268 - MER53 DNA DNA -20 169 18 240 232 0 0 chr13 117941634 117941703 -1803195 - MER53 DNA DNA -118 71 3 1885 140 0 49 chr13 117941732 117941878 -1803020 + AluSx SINE Alu 1 126 -186 2512 60 0 7 chr13 117941878 117942176 -1802722 + AluY SINE Alu 1 296 -15 1885 140 0 49 chr13 117942176 117942337 -1802561 + AluSx SINE Alu 126 293 -19 202 267 0 17 chr13 117943853 117943913 -1800985 + G-rich Low_complexity Low_complexity 1 59 0 2335 86 0 20 chr13 117944111 117944414 -1800484 - AluSq SINE Alu -16 297 1 2336 89 0 49 chr13 117944473 117944798 -1800100 - AluY SINE Alu -2 309 1 182 291 0 0 chr13 117945721 117945776 -1799122 - MIR SINE MIR -90 172 118 2309 69 3 26 chr13 117946678 117946984 -1797914 + AluY SINE Alu 1 299 -12 1366 236 70 27 chr13 117948911 117949352 -1795546 + MLT1C LTR MaLR 8 467 0 2259 240 66 34 chr13 117949364 117949790 -1795108 - L1ME1 LINE L1 -2 6164 5753 2227 104 6 52 chr13 117949790 117949925 -1794973 + AluSx SINE Alu 1 141 -171 2978 3 0 0 chr13 117949925 117950236 -1794662 + AluYa5 SINE Alu 1 311 0 2227 104 6 52 chr13 117950236 117950426 -1794472 + AluSx SINE Alu 141 311 -1 2259 240 66 34 chr13 117950426 117951204 -1793694 - L1ME1 LINE L1 -413 5753 4919 1458 208 24 43 chr13 117951204 117951575 -1793323 + MLT1A1 LTR MaLR 1 364 -1 2259 240 66 34 chr13 117951575 117951603 -1793295 - L1ME1 LINE L1 -1247 4919 4893 2603 70 0 6 chr13 117951603 117951916 -1792982 - AluSq SINE Alu -2 311 1 4884 236 86 34 chr13 117951920 117952219 -1792679 - L1ME1 LINE L1 -1587 4559 4277 2125 121 30 19 chr13 117952219 117952590 -1792308 + THE1C LTR MaLR 1 375 0 4884 236 86 34 chr13 117952590 117954119 -1790779 - L1ME1 LINE L1 -1869 4277 2636 4603 148 47 11 chr13 117957546 117957964 -1786934 + MER4D LTR ERV1 1 403 -500 2204 111 3 63 chr13 117957964 117958296 -1786602 - AluSx SINE Alu 0 312 1 4603 148 47 11 chr13 117958296 117958749 -1786149 + MER4D LTR ERV1 403 903 0 655 304 146 21 chr13 117960668 117961125 -1783773 + L2 LINE L2 2776 3312 -1 1383 269 67 2 chr13 117961716 117962148 -1782750 + MLT1C LTR MaLR 7 466 -1 188 119 0 48 chr13 117963604 117963646 -1781252 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 240 235 0 29 chr13 117963661 117963729 -1781169 + (TCTCTG)n Simple_repeat Simple_repeat 6 71 0 263 284 214 20 chr13 117964295 117964496 -1780402 - MIR SINE MIR 0 262 23 203 156 0 0 chr13 117965942 117965974 -1778924 - MIR SINE MIR -118 144 113 285 247 39 0 chr13 117966189 117966266 -1778632 - MER58A DNA MER1_type -24 83 4 198 278 0 0 chr13 117967098 117967195 -1777703 + (TG)n Simple_repeat Simple_repeat 1 97 0 231 285 0 0 chr13 117967271 117967415 -1777483 + (TG)n Simple_repeat Simple_repeat 1 144 0 269 48 48 0 chr13 117967697 117967739 -1777159 + (TCTCTG)n Simple_repeat Simple_repeat 3 46 0 1899 215 102 8 chr13 117972002 117972500 -1772398 + MER77 LTR ERV1 54 598 -7 205 200 60 0 chr13 117972731 117972781 -1772117 - L3 LINE CR1 -7 1570 1518 204 327 50 10 chr13 117973341 117973442 -1771456 + MIR SINE MIR 31 135 -127 1933 119 19 47 chr13 117981201 117981521 -1763377 - AluSx SINE Alu -1 311 1 315 191 29 15 chr13 117981575 117981643 -1763255 + MER81 DNA DNA 4 72 -42 206 284 267 0 chr13 117982204 117982320 -1762578 - MER5B DNA MER1_type 0 178 32 1259 169 100 0 chr13 117983092 117983341 -1761557 + AluJo SINE Alu 9 282 -30 313 229 61 0 chr13 117983386 117983517 -1761381 + (CA)n Simple_repeat Simple_repeat 1 139 0 200 339 52 9 chr13 117983519 117983634 -1761264 + MER5A DNA MER1_type 70 189 0 259 326 84 11 chr13 117984596 117984786 -1760112 - L1M4 LINE L1 -1425 4721 4518 2108 97 13 0 chr13 117985016 117985314 -1759584 - AluSq SINE Alu -5 308 7 1037 248 164 20 chr13 117985580 117986031 -1758867 + L1MC4 LINE L1 7387 7902 -140 2394 46 0 0 chr13 117986145 117986460 -1758438 + AluY SINE Alu 1 315 0 1240 299 124 64 chr13 117986460 117986767 -1758131 - L1M4 LINE L1 -775 5371 5084 1688 151 22 47 chr13 117986767 117987086 -1757812 - AluJo SINE Alu -1 311 1 1240 299 124 64 chr13 117987086 117987615 -1757283 - L1M4 LINE L1 -1062 5084 3161 301 326 11 11 chr13 117991202 117991294 -1753604 + L2 LINE L2 3205 3296 -17 25 0 0 0 chr13 117997935 117997960 -1746938 + GC_rich Low_complexity Low_complexity 1 25 0 963 305 59 1 chr13 117999943 118000375 -1744523 + L1MC2 LINE L1 5862 6333 0 185 228 177 13 chr13 118001728 118001807 -1743091 + L2 LINE L2 3205 3296 -17 265 307 17 101 chr13 118009593 118009772 -1735126 - MER58A DNA MER1_type -42 182 19 308 305 136 0 chr13 118010413 118010531 -1734367 + L3 LINE CR1 1438 1571 -6 2304 105 0 0 chr13 118010563 118010876 -1734022 + AluSq SINE Alu 1 313 0 1424 143 4 38 chr13 118011493 118011730 -1733168 + AluJo SINE Alu 1 229 -83 432 218 0 0 chr13 118012640 118012819 -1732079 + (CA)n Simple_repeat Simple_repeat 2 180 0 2451 56 0 7 chr13 118014222 118014528 -1730370 + AluY SINE Alu 1 304 -7 1496 230 97 7 chr13 118015606 118016286 -1728612 + L1MD1 LINE L1 5271 6025 -141 194 217 43 0 chr13 118016348 118016394 -1728504 + L2 LINE L2 3220 3267 -5 490 160 11 43 chr13 118017131 118017225 -1727673 - AluSg/x SINE Alu -13 296 206 227 333 92 0 chr13 118018440 118018560 -1726338 - MIR SINE MIR -69 193 63 1697 283 58 65 chr13 118018788 118019235 -1725663 - L1M4 LINE L1 -868 5278 4829 2181 70 0 7 chr13 118019235 118019548 -1725350 + AluY SINE Alu 1 311 0 1697 283 58 65 chr13 118019548 118019904 -1724994 - L1M4 LINE L1 -1317 4829 4472 2455 75 0 0 chr13 118019904 118020210 -1724688 - AluY SINE Alu -5 306 1 1697 283 58 65 chr13 118020210 118020657 -1724241 - L1M4 LINE L1 -1674 4472 4035 335 339 94 28 chr13 118020658 118020838 -1724060 - L1ME LINE L1 -5875 195 4 412 289 142 15 chr13 118021853 118022052 -1722846 - MIR SINE MIR -27 235 18 225 0 0 0 chr13 118023479 118023504 -1721394 + (CA)n Simple_repeat Simple_repeat 2 26 0 1282 250 145 4 chr13 118023709 118024205 -1720693 - L1ME3A LINE L1 -194 5976 5411 567 0 0 0 chr13 118024945 118025008 -1719890 + (TG)n Simple_repeat Simple_repeat 1 63 0 329 302 115 20 chr13 118026786 118027124 -1717774 + L1MC4 LINE L1 7198 7593 -248 550 174 4 30 chr13 118027342 118027608 -1717290 + (TG)n Simple_repeat Simple_repeat 1 258 0 1090 198 5 5 chr13 118028179 118028367 -1716531 - L1MA7 LINE L1 0 6291 6101 1445 202 175 24 chr13 118028367 118028739 -1716159 + MSTC LTR MaLR 1 428 0 1090 198 5 5 chr13 118028739 118028762 -1716136 - L1MA7 LINE L1 -189 6102 6080 2299 99 0 6 chr13 118029486 118029800 -1715098 - AluSq SINE Alu -1 312 1 2034 248 114 21 chr13 118030073 118030936 -1713962 + L1M4 LINE L1 2599 3541 -2605 * 2060 264 62 33 chr13 118030935 118031780 -1713118 + L1M4 LINE L1 4002 4870 -1276 312 337 8 33 chr13 118035334 118035574 -1709324 + C-rich Low_complexity Low_complexity 1 234 0 2321 166 39 0 chr13 118035966 118036376 -1708522 + MSTB LTR MaLR 1 426 0 25 0 0 0 chr13 118089928 118089953 -1654945 + GC_rich Low_complexity Low_complexity 1 25 0 497 291 58 25 chr13 118090654 118090805 -1654093 + MER20B DNA MER1_type 202 367 -416 8015 34 30 1 chr13 118090805 118091784 -1653114 - LTR13 LTR ERVK 0 1007 1 497 291 58 25 chr13 118091784 118091907 -1652991 + MER20B DNA MER1_type 367 485 -298 246 145 60 12 chr13 118092027 118092110 -1652788 + (TA)n Simple_repeat Simple_repeat 2 88 0 1970 129 31 0 chr13 118093434 118093721 -1651177 - AluSx SINE Alu -16 296 1 554 274 48 0 chr13 118093996 118094164 -1650734 + MER20 DNA MER1_type 41 216 -3 1011 201 82 0 chr13 118094916 118095160 -1649738 + MER101 LTR ERV1 1 264 -210 247 185 0 0 chr13 118095161 118095226 -1649672 + MER101 LTR ERV1 170 234 -240 310 232 0 0 chr13 118095228 118095327 -1649571 + MER101 LTR ERV1 165 263 -211 444 231 0 0 chr13 118095328 118095432 -1649466 + MER101 LTR ERV1 165 268 -206 289 182 0 81 chr13 118095432 118095531 -1649367 + MER101 LTR ERV1 173 263 -211 * 398 229 0 0 chr13 118095522 118095656 -1649242 + MER101 LTR ERV1 165 370 -200 1924 137 10 0 chr13 118095676 118095983 -1648915 + MER101 LTR ERV1 165 474 0 2060 112 0 4 chr13 118096117 118096395 -1648503 + AluSx SINE Alu 28 304 -8 1094 201 84 0 chr13 118096447 118096686 -1648212 - MER2 DNA MER2_type -12 333 75 1839 171 66 55 chr13 118097016 118097141 -1647757 - MLT1C LTR MaLR 0 467 345 2454 101 0 0 chr13 118097141 118097447 -1647451 - AluSx SINE Alu -6 306 1 1839 171 66 55 chr13 118097447 118097683 -1647215 - MLT1C LTR MaLR -122 345 97 1837 182 14 19 chr13 118097683 118097888 -1647010 - MER47A DNA MER2_type -1957 366 162 2349 86 3 3 chr13 118097888 118098179 -1646719 + AluSx SINE Alu 1 291 -21 1837 182 14 19 chr13 118098179 118098341 -1646557 - MER47A DNA MER2_type -2161 162 1 1839 171 66 55 chr13 118098341 118098433 -1646465 - MLT1C LTR MaLR -370 97 8 468 236 174 0 chr13 118098834 118098863 -1646035 + MER5A DNA MER1_type 1 24 -165 234 0 0 0 chr13 118098863 118098889 -1646009 + (CAG)n Simple_repeat Simple_repeat 1 26 0 468 236 174 0 chr13 118098889 118099020 -1645878 + MER5A DNA MER1_type 24 189 0 233 227 30 30 chr13 118099716 118099782 -1645116 + MIR SINE MIR 133 198 -64 2065 153 0 16 chr13 118100356 118100696 -1644202 - AluSx SINE Alu 0 312 1 6644 209 88 90 chr13 118100804 118102484 -1642414 - L1MC3 LINE L1 -22 7763 6089 2229 107 0 0 chr13 118102484 118102773 -1642125 - AluSx SINE Alu -6 306 18 6644 209 88 90 chr13 118102773 118103477 -1641421 - L1MC3 LINE L1 -1696 6089 5385 1106 269 22 64 chr13 118105200 118105780 -1639118 - L1MC5 LINE L1 -114 7847 7292 407 266 108 4 chr13 118105893 118106123 -1638775 - L1MC5 LINE L1 -992 6817 6562 467 239 141 22 chr13 118106166 118106411 -1638487 - L1ME LINE L1 -451 5670 5383 * 790 169 154 0 chr13 118106409 118106610 -1638288 - L1MA8 LINE L1 0 6291 6060 * 1112 191 30 21 chr13 118106609 118106845 -1638053 - L1MA7 LINE L1 -272 6019 5782 278 244 151 0 chr13 118107311 118107397 -1637501 - L1MA7 LINE L1 -479 5812 5714 547 241 87 29 chr13 118107660 118107867 -1637031 - L1ME3 LINE L1 -21 6141 5923 1025 302 75 13 chr13 118107878 118108329 -1636569 - L1ME3 LINE L1 -322 5840 5362 492 352 53 23 chr13 118108333 118108895 -1636003 - L1ME3 LINE L1 -1122 5024 4446 1319 241 58 27 chr13 118109347 118109757 -1635141 + L1MC4 LINE L1 7353 7775 -267 365 109 0 31 chr13 118109758 118109822 -1635076 - MADE1 DNA Mariner 0 80 19 2453 59 0 3 chr13 118109881 118110184 -1634714 + AluY SINE Alu 1 302 -9 383 230 192 77 chr13 118110285 118110392 -1634506 - L1ME3 LINE L1 -2225 3921 3828 2078 112 0 7 chr13 118110392 118110696 -1634202 - AluSx SINE Alu -10 302 1 383 230 192 77 chr13 118110696 118110849 -1634049 - L1ME3 LINE L1 -2318 3828 3631 512 316 193 24 chr13 118111231 118111655 -1633243 - L1ME3 LINE L1 -2979 3167 2672 2221 70 0 33 chr13 118112019 118112361 -1632537 - AluY SINE Alu 0 332 1 22 35 0 0 chr13 118113704 118113733 -1631165 + AT_rich Low_complexity Low_complexity 1 29 0 2689 7 0 0 chr13 118113742 118114041 -1630857 + AluYa5 SINE Alu 1 299 -12 451 296 193 0 chr13 118115819 118116150 -1628748 - L2 LINE L2 -762 2552 2158 222 301 194 6 chr13 118116164 118116499 -1628399 - L2 LINE L2 -1619 1695 1298 482 328 40 15 chr13 118116848 118117046 -1627852 + L1MC4a LINE L1 3115 3317 -2829 1990 76 4 36 chr13 118117053 118117330 -1627568 - AluY SINE Alu -43 268 1 22 0 0 0 chr13 118117332 118117354 -1627544 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr13 118117354 118117377 -1627521 + (CAA)n Simple_repeat Simple_repeat 2 24 0 329 300 124 32 chr13 118117673 118117821 -1627077 + L1MC4a LINE L1 4749 4882 -1264 2280 91 0 0 chr13 118117821 118118119 -1626779 - AluY SINE Alu -13 298 1 329 300 124 32 chr13 118118119 118118503 -1626395 + L1MC4a LINE L1 4882 5330 -816 271 338 108 0 chr13 118118866 118119005 -1625893 + L1MC4a LINE L1 5808 5961 -1847 183 222 0 0 chr13 118119148 118119193 -1625705 + GA-rich Low_complexity Low_complexity 3 47 0 371 179 28 0 chr13 118119916 118120061 -1624837 + (CA)n Simple_repeat Simple_repeat 1 149 0 580 188 94 29 chr13 118120394 118120564 -1624334 - MER5A DNA MER1_type -8 181 1 1429 202 101 9 chr13 118120780 118121116 -1623782 + MLT2D LTR ERVL 1 367 -47 268 295 129 22 chr13 118121235 118121374 -1623524 - MIR SINE MIR -28 234 81 206 240 20 0 chr13 118122189 118122239 -1622659 + GA-rich Low_complexity Low_complexity 2 52 0 21 36 0 0 chr13 118122500 118122528 -1622370 + AT_rich Low_complexity Low_complexity 1 28 0 272 300 60 27 chr13 118122708 118122858 -1622040 - L1ME LINE L1 -377 5744 5590 24 0 0 0 chr13 118123247 118123271 -1621627 + GC_rich Low_complexity Low_complexity 1 24 0 525 249 76 32 chr13 118123578 118123763 -1621135 - MLT1C LTR MaLR -274 193 1 378 278 0 0 chr13 118125018 118125198 -1619700 + (TG)n Simple_repeat Simple_repeat 1 180 0 477 244 0 0 chr13 118125237 118125397 -1619501 + (TG)n Simple_repeat Simple_repeat 2 161 0 922 214 211 0 chr13 118126486 118126790 -1618108 + MLT1D LTR MaLR 138 505 0 1491 212 124 6 chr13 118126925 118127279 -1617619 + MSTD LTR MaLR 1 396 0 720 281 24 30 chr13 118128824 118129193 -1615705 + MLT2C2 LTR ERVL 21 383 -14 561 138 138 6 chr13 118129334 118129493 -1615405 + HsTC2 DNA Tc2 1610 1789 -109 740 243 111 4 chr13 118131738 118131964 -1612934 + MIR SINE MIR 5 254 -8 223 253 101 0 chr13 118132178 118132257 -1612641 - L2 LINE L2 -25 3288 3202 6332 236 42 22 chr13 118135527 118138355 -1606543 - L1MD1 LINE L1 -14 6622 3563 1920 124 15 0 chr13 118138355 118138628 -1606270 - AluSx SINE Alu -35 277 1 6332 236 42 22 chr13 118138628 118138876 -1606022 - L1MD1 LINE L1 -3073 3563 3321 3590 245 124 38 chr13 118138864 118140141 -1604757 + MSTD-int LTR MaLR 266 1651 0 * 439 180 110 0 chr13 118140141 118140241 -1604657 + MSTD LTR MaLR 1 111 -254 690 138 9 0 chr13 118140287 118140396 -1604502 + MSTD LTR MaLR 274 383 -13 697 295 34 21 chr13 118140412 118140646 -1604252 - L1MD1 LINE L1 -6303 237 1 193 228 69 89 chr13 118140803 118140904 -1603994 + MIR3 SINE MIR 87 185 -23 1229 154 130 27 chr13 118141936 118142229 -1602669 - L1MC2 LINE L1 -2 6342 6020 241 146 24 0 chr13 118142253 118142294 -1602604 + L1MC3 LINE L1 6035 6076 -1709 502 20 0 4 chr13 118142626 118142824 -1602074 + AluY SINE Alu 1 284 -28 347 266 21 0 chr13 118143940 118144034 -1600864 - MIR SINE MIR -119 143 48 324 229 12 48 chr13 118145114 118145280 -1599618 + GA-rich Low_complexity Low_complexity 6 165 0 2167 106 3 0 chr13 118145369 118145672 -1599226 + AluJb SINE Alu 1 304 -8 1891 154 3 3 chr13 118146940 118147245 -1597653 + AluJb SINE Alu 4 308 -4 246 325 12 0 chr13 118147772 118147855 -1597043 + (TG)n Simple_repeat Simple_repeat 1 84 0 254 254 9 0 chr13 118147873 118147983 -1596915 + (TG)n Simple_repeat Simple_repeat 2 112 0 242 59 29 73 chr13 118148516 118148584 -1596314 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 284 164 13 31 chr13 118148586 118148745 -1596153 - HERV17 LTR ERV1 -7760 866 711 218 182 0 0 chr13 118148746 118148790 -1596108 + CT-rich Low_complexity Low_complexity 1 44 0 285 155 69 16 chr13 118150782 118151029 -1593869 + (CA)n Simple_repeat Simple_repeat 1 260 0 273 303 61 16 chr13 118155293 118155596 -1589302 - L1ME4a LINE L1 -6 6115 5775 466 256 193 47 chr13 118155751 118156201 -1588697 + MLT1H1 LTR MaLR 32 547 -8 547 324 0 0 chr13 118158503 118158682 -1586216 + (CA)n Simple_repeat Simple_repeat 2 180 0 532 226 4 23 chr13 118158721 118159024 -1585874 + (CA)n Simple_repeat Simple_repeat 1 296 0 1110 237 101 9 chr13 118159041 118159358 -1585540 + MLT1A1 LTR MaLR 1 346 -19 1335 217 82 24 chr13 118159817 118160158 -1584740 - MLT1A1 LTR MaLR -4 361 1 289 251 102 43 chr13 118162228 118162415 -1582483 + MLT1D LTR MaLR 19 216 -289 910 277 134 2 chr13 118163303 118163707 -1581191 - MLT1E3 LTR MaLR -115 509 53 207 170 0 0 chr13 118165278 118165325 -1579573 + GA-rich Low_complexity Low_complexity 2 48 0 499 197 128 43 chr13 118170960 118171148 -1573750 + LTR54 LTR ERV1 27 230 -280 2166 128 0 3 chr13 118171589 118171901 -1572997 + AluSx SINE Alu 1 311 -1 595 259 52 14 chr13 118172098 118172310 -1572588 + LTR54 LTR ERV1 291 510 0 276 360 81 12 chr13 118173422 118173594 -1571304 - MIR SINE MIR -69 193 10 610 243 103 9 chr13 118173923 118174137 -1570761 - L1MA9 LINE L1 0 6312 6079 999 264 80 78 chr13 118174384 118174945 -1569953 - L1MA8 LINE L1 -221 6070 5509 285 209 60 0 chr13 118175127 118175194 -1569704 + MIR SINE MIR 79 149 -113 1550 179 0 25 chr13 118176641 118176920 -1567978 - AluJo SINE Alu -40 272 1 800 202 54 0 chr13 118183471 118183639 -1561259 - AluJb SINE Alu -14 298 122 198 319 129 32 chr13 118186074 118186447 -1558451 + L2 LINE L2 2377 2785 -529 1897 125 104 3 chr13 118187497 118187825 -1557073 - MER46B DNA MER2_type 0 236 1 21 0 0 0 chr13 118187850 118187871 -1557027 + AT_rich Low_complexity Low_complexity 1 21 0 218 350 72 0 chr13 118188978 118189075 -1555823 + L2 LINE L2 3168 3271 -1 1904 129 32 63 chr13 118189646 118189994 -1554904 + MER1B DNA MER1_type 1 337 0 2220 102 3 10 chr13 118195269 118195572 -1549326 + AluSx SINE Alu 1 301 -11 198 0 0 0 chr13 118196847 118196869 -1548029 + (CCCCAG)n Simple_repeat Simple_repeat 6 27 0 1650 114 0 0 chr13 118201713 118201961 -1542937 - AluSx SINE Alu 0 302 55 366 61 0 0 chr13 118203597 118203646 -1541252 + (CA)n Simple_repeat Simple_repeat 2 50 0 575 236 169 26 chr13 118204261 118204456 -1540442 - MIR SINE MIR -24 238 16 296 94 19 0 chr13 118206943 118206996 -1537902 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 452 200 8 0 chr13 118207109 118207239 -1537659 + (TCCA)n Simple_repeat Simple_repeat 3 133 0 801 162 9 9 chr13 118207251 118207473 -1537425 + (TCCA)n Simple_repeat Simple_repeat 1 222 0 974 139 0 11 chr13 118207486 118207666 -1537232 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 783 229 80 0 chr13 118207773 118207948 -1536950 + MER5A DNA MER1_type 1 189 0 31 26 0 0 chr13 118210680 118210718 -1534180 + GC_rich Low_complexity Low_complexity 1 38 0 356 256 122 74 chr13 118210912 118210987 -1533911 + L1MC5 LINE L1 7116 7186 -775 2266 96 0 7 chr13 118210987 118211290 -1533608 + AluSx SINE Alu 1 301 -11 356 256 122 74 chr13 118211290 118211526 -1533372 + L1MC5 LINE L1 7186 7442 -519 278 326 50 17 chr13 118213146 118213385 -1531513 - L1ME LINE L1 -343 5778 5532 2002 132 0 16 chr13 118213664 118213974 -1530924 + AluSx SINE Alu 1 305 -7 1844 114 33 0 chr13 118214581 118214888 -1530010 + AluY SINE Alu 1 316 0 183 309 107 0 chr13 118216628 118216712 -1528186 + L2 LINE L2 3169 3261 -11 204 222 0 0 chr13 118217101 118217137 -1527761 + (TG)n Simple_repeat Simple_repeat 2 37 0 2082 210 83 7 chr13 118217666 118218029 -1526869 + L1MB3 LINE L1 5599 6018 -165 2013 220 60 23 chr13 118218029 118218516 -1526382 + LTR10B LTR ERV1 1 505 0 2082 210 83 7 chr13 118218516 118218695 -1526203 + L1MB3 LINE L1 6018 6182 -1 385 145 17 26 chr13 118219360 118219477 -1525421 + (CCCTAA)n Simple_repeat Simple_repeat 1 116 0 2138 95 3 0 chr13 118222162 118222457 -1522441 + AluSq SINE Alu 12 307 -6 216 97 0 0 chr13 118225601 118225632 -1519266 + (CTGGGG)n Simple_repeat Simple_repeat 3 33 0 224 238 0 50 chr13 118229038 118229139 -1515759 + C-rich Low_complexity Low_complexity 5 100 0 281 68 14 68 chr13 118229218 118229291 -1515607 + (CGGGG)n Simple_repeat Simple_repeat 1 69 0 248 194 0 48 chr13 118229356 118229418 -1515480 + C-rich Low_complexity Low_complexity 3 61 0 250 371 84 30 chr13 118232834 118233036 -1511862 - L2 LINE L2 -17 3296 3084 212 318 0 0 chr13 118233144 118233210 -1511688 - L2 LINE L2 -1499 1815 1750 623 227 14 0 chr13 118233821 118233962 -1510936 + MLT1B LTR MaLR 1 143 -247 210 255 20 0 chr13 118237856 118237907 -1506991 + (TG)n Simple_repeat Simple_repeat 2 53 0 * 260 361 11 27 chr13 118237876 118238059 -1506839 + (CGTG)n Simple_repeat Simple_repeat 1 180 0 * 350 342 13 10 chr13 118237924 118238235 -1506663 + (TG)n Simple_repeat Simple_repeat 1 312 0 239 394 18 6 chr13 118238372 118238542 -1506356 + (TG)n Simple_repeat Simple_repeat 1 172 0 224 193 187 0 chr13 118240410 118240560 -1504338 + (CGGGA)n Simple_repeat Simple_repeat 2 179 0 186 367 33 22 chr13 118246877 118246967 -1497931 + MER5A DNA MER1_type 59 149 -40 * 187 361 111 9 chr13 118246895 118247003 -1497895 - MER5A DNA MER1_type -65 124 6 187 361 0 0 chr13 118248314 118248375 -1496523 - L2 LINE L2 -16 3256 3196 216 263 127 42 chr13 118249053 118249171 -1495727 + L2 LINE L2 2578 2705 -609 330 363 77 32 chr13 118249536 118249784 -1495114 + L2 LINE L2 3000 3258 -14 2209 91 7 0 chr13 118250949 118251236 -1493662 - AluSx SINE Alu -23 289 1 2133 97 0 3 chr13 118252888 118253176 -1491722 + AluSg SINE Alu 1 287 -23 180 319 0 0 chr13 118254175 118254222 -1490676 - MIR SINE MIR -132 76 30 1932 163 131 13 chr13 118254455 118254836 -1490062 + MSTA LTR MaLR 1 426 -2 294 355 79 0 chr13 118256216 118256368 -1488530 + MIR SINE MIR 15 178 -84 2270 88 0 7 chr13 118257714 118258019 -1486879 + AluY SINE Alu 1 303 -8 823 217 41 83 chr13 118262216 118262506 -1482392 + L1MD2 LINE L1 6076 6353 -6 2480 116 8 0 chr13 118262506 118262867 -1482031 + THE1B LTR MaLR 1 364 0 1589 243 41 50 chr13 118264823 118265378 -1479520 - MER44D DNA MER2_type 0 605 1 2020 106 102 0 chr13 118268338 118268621 -1476277 + AluSx SINE Alu 1 312 0 209 292 28 0 chr13 118270421 118270493 -1474405 + L3b LINE CR1 1314 1387 -196 326 187 27 0 chr13 118270557 118270632 -1474266 + (TATG)n Simple_repeat Simple_repeat 2 78 0 216 162 0 0 chr13 118270632 118270669 -1474229 + GA-rich Low_complexity Low_complexity 2 38 0 1413 178 38 34 chr13 118270677 118270941 -1473957 - AluJo SINE Alu -47 265 1 1771 194 0 10 chr13 118272057 118272361 -1472537 + AluJo SINE Alu 1 301 -11 242 356 132 35 chr13 118274027 118274201 -1470697 + L2 LINE L2 3082 3272 0 421 254 15 15 chr13 118274453 118274583 -1470315 + L1MDa LINE L1 1 130 -6410 * 4437 238 55 38 chr13 118274558 118274897 -1470001 + L1M4 LINE L1 4056 4387 -2153 2403 98 0 0 chr13 118274897 118275194 -1469704 + AluSq SINE Alu 6 302 -11 4437 238 55 38 chr13 118275194 118275778 -1469120 + L1M4 LINE L1 4387 4959 -1581 1619 188 10 27 chr13 118275778 118276076 -1468822 - AluJo SINE Alu -19 293 1 4437 238 55 38 chr13 118276076 118276610 -1468288 + L1M4 LINE L1 4959 5540 -1000 226 177 25 114 chr13 118276611 118276690 -1468208 + L1MD3 LINE L1 7910 7981 -14 285 278 74 25 chr13 118276701 118276863 -1468035 + L1MDa LINE L1 517 686 -6035 323 326 45 0 chr13 118277026 118277158 -1467740 + L1MDa LINE L1 969 1106 -5615 232 362 141 0 chr13 118277394 118277684 -1467214 + L1MDa LINE L1 1328 1658 -5063 238 270 40 0 chr13 118277884 118277984 -1466914 + L1ME2 LINE L1 5703 5806 -358 295 342 49 39 chr13 118279047 118279354 -1465544 + L1ME2 LINE L1 5845 6154 -10 302 246 0 68 chr13 118283108 118283299 -1461599 + G-rich Low_complexity Low_complexity 2 179 0 327 212 0 60 chr13 118283356 118283540 -1461358 + G-rich Low_complexity Low_complexity 5 177 0 1302 143 40 24 chr13 118283908 118284159 -1460739 + L1PA16 LINE L1 5911 6165 -1 2238 97 0 0 chr13 118284831 118285136 -1459762 - AluSc SINE Alu 0 305 1 328 328 24 0 chr13 118285329 118285454 -1459444 - MER5A DNA MER1_type -3 186 59 2388 95 0 0 chr13 118287234 118287540 -1457358 - AluY SINE Alu -5 306 1 25 0 0 0 chr13 118287550 118287575 -1457323 + AT_rich Low_complexity Low_complexity 1 25 0 201 74 0 0 chr13 118287947 118287974 -1456924 + (TG)n Simple_repeat Simple_repeat 2 28 0 569 316 15 15 chr13 118288492 118288698 -1456200 + L3 LINE CR1 603 808 -769 1667 195 81 11 chr13 118288905 118289275 -1455623 - MSTD LTR MaLR 0 396 1 351 291 9 0 chr13 118297050 118297160 -1447738 + (TG)n Simple_repeat Simple_repeat 1 111 0 406 255 8 4 chr13 118297176 118297445 -1447453 + (TG)n Simple_repeat Simple_repeat 1 270 0 296 71 48 0 chr13 118298510 118298552 -1446346 + Tigger4(Zombi) DNA MER2_type 2688 2731 0 2311 114 0 3 chr13 118298615 118298922 -1445976 - AluSx SINE Alu -6 306 1 214 291 164 37 chr13 118299067 118299201 -1445697 - MIR SINE MIR 0 262 112 3080 176 71 10 chr13 118299254 118299943 -1444955 - L1 LINE L1 -1738 4408 3678 410 318 74 11 chr13 118301740 118301916 -1442982 - MIR SINE MIR -36 226 40 218 163 41 0 chr13 118304167 118304216 -1440682 + GA-rich Low_complexity Low_complexity 4 54 0 798 240 188 7 chr13 118305112 118305400 -1439498 - MER2 DNA MER2_type -5 340 1 22 0 0 0 chr13 118305781 118305803 -1439095 + AT_rich Low_complexity Low_complexity 1 22 0 245 250 64 70 chr13 118306197 118306353 -1438545 + MER5A DNA MER1_type 1 155 -34 805 198 45 17 chr13 118306447 118306624 -1438274 - AluJo SINE Alu -7 305 124 209 296 99 0 chr13 118306840 118306911 -1437987 - L2 LINE L2 -43 3270 3193 1992 137 14 0 chr13 118307603 118307913 -1436985 + AluSx SINE Alu 1 314 0 566 220 38 10 chr13 118310387 118310556 -1434342 - MER5A DNA MER1_type -6 172 9 228 229 145 12 chr13 118311182 118311265 -1433633 - MIR SINE MIR -65 197 104 268 289 33 0 chr13 118312475 118312565 -1432333 + L1MA9 LINE L1 5998 6090 -222 266 276 8 39 chr13 118312682 118312809 -1432089 + L1MA9 LINE L1 6160 6282 -30 2183 247 78 21 chr13 118314268 118314850 -1430048 + L1MD1 LINE L1 4561 5109 -1133 2209 113 3 22 chr13 118314850 118315169 -1429729 + AluSq SINE Alu 1 313 0 2183 247 78 21 chr13 118315169 118316000 -1428898 + L1MD1 LINE L1 5109 6242 0 799 136 32 7 chr13 118317146 118317301 -1427597 + L1MA4 LINE L1 6140 6298 -2 2149 121 3 10 chr13 118317307 118317605 -1427293 + AluSg SINE Alu 1 296 -14 405 0 0 0 chr13 118318008 118318053 -1426845 + (TG)n Simple_repeat Simple_repeat 2 46 0 707 198 13 13 chr13 118318157 118318314 -1426584 - FAM SINE Alu -17 158 2 223 191 32 0 chr13 118318494 118318557 -1426341 + GA-rich Low_complexity Low_complexity 4 68 0 193 258 141 70 chr13 118319939 118320067 -1424831 - L2 LINE L2 -5 3308 3172 729 263 81 0 chr13 118321355 118321541 -1423357 + MER6B DNA MER2_type 7 207 -3 1117 236 60 14 chr13 118322002 118322349 -1422549 + L1MB7 LINE L1 5689 6051 -133 204 81 0 54 chr13 118322422 118322459 -1422439 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2134 93 58 0 chr13 118323404 118323695 -1421203 - AluSc SINE Alu -1 308 1 309 196 0 51 chr13 118324662 118324800 -1420098 + GA-rich Low_complexity Low_complexity 4 134 0 201 315 0 0 chr13 118324996 118325050 -1419848 + GA-rich Low_complexity Low_complexity 2 55 0 3718 232 47 58 chr13 118325819 118326351 -1418547 - L1M4 LINE L1 -869 5277 4740 2466 80 0 6 chr13 118326351 118326662 -1418236 - AluY SINE Alu -2 309 1 3718 232 47 58 chr13 118326662 118327412 -1417486 - L1M4 LINE L1 -1406 4740 4010 657 232 13 7 chr13 118327397 118327548 -1417350 - L1M4 LINE L1 -1970 4176 4025 * 6336 248 65 10 chr13 118327548 118329025 -1415873 - L1MCa LINE L1 -1970 4456 2808 1405 178 153 23 chr13 118329025 118329423 -1415475 + LTR7 LTR ERV1 1 450 0 6336 248 65 10 chr13 118329423 118330224 -1414674 - L1MCa LINE L1 -3618 2808 2053 301 200 0 0 chr13 118330240 118330300 -1414598 - L1MCa LINE L1 -4435 1991 1932 665 167 8 0 chr13 118330314 118330434 -1414464 + FLAM_C SINE Alu 22 142 -1 1228 189 15 115 chr13 118330473 118330865 -1414033 + MLT1A1 LTR MaLR 1 353 -12 1846 219 76 19 chr13 118330883 118331419 -1413479 - L1MCa LINE L1 -4610 1997 1223 2092 101 3 71 chr13 118331419 118331745 -1413153 - AluSq SINE Alu -9 304 1 1846 219 76 19 chr13 118331745 118331876 -1413022 - L1MCa LINE L1 -5384 1223 1101 1154 195 77 48 chr13 118332019 118332469 -1412429 - MLT1D LTR MaLR 0 505 1 316 361 31 0 chr13 118332751 118332881 -1412017 + MIR SINE MIR 7 140 -122 2334 96 0 3 chr13 118333461 118333762 -1411136 - AluSx SINE Alu -11 301 2 2195 113 3 16 chr13 118333826 118334137 -1410761 - AluSg SINE Alu -3 307 1 2090 130 3 3 chr13 118335226 118335519 -1409379 + AluSx SINE Alu 5 297 -15 354 292 23 23 chr13 118335584 118335714 -1409184 + MIR SINE MIR 84 213 -49 2570 49 3 3 chr13 118343902 118344206 -1400692 + AluY SINE Alu 1 304 -7 1761 187 112 7 chr13 118344296 118344735 -1400163 + MER66B LTR ERV1 1 485 -1 497 70 0 0 chr13 118346941 118347012 -1397886 - MER41B LTR ERV1 -85 550 480 1876 108 25 21 chr13 118347387 118347694 -1397204 + AluSx SINE Alu 2 309 0 228 306 20 0 chr13 118348120 118348218 -1396680 + L1MB7 LINE L1 5677 5776 -398 488 216 29 36 chr13 118348440 118348579 -1396319 + L1MB7 LINE L1 6039 6176 -8 2082 115 34 3 chr13 118348797 118349093 -1395805 - AluSx SINE Alu -6 306 2 478 267 17 0 chr13 118350152 118350268 -1394630 - FAM SINE Alu -64 121 4 2290 97 0 3 chr13 118351155 118351444 -1393454 - AluSx SINE Alu -24 288 1 2140 136 0 3 chr13 118351831 118352139 -1392759 + AluSx SINE Alu 1 307 -5 235 271 0 0 chr13 118352812 118352871 -1392027 - MER89 LTR ERV1 -245 314 256 358 217 121 89 chr13 118353016 118353173 -1391725 - L1MC4 LINE L1 -5 8037 7876 734 290 65 0 chr13 118355428 118355499 -1389399 - REP3 LTR ERV -232 330 265 243 0 0 0 chr13 118355499 118355526 -1389372 + (CAGGG)n Simple_repeat Simple_repeat 3 29 0 734 290 65 0 chr13 118355526 118355764 -1389134 - REP3 LTR ERV -297 265 1 295 241 263 0 chr13 118355806 118355939 -1388959 + L1MB8 LINE L1 5255 5422 -748 393 236 20 118 chr13 118355949 118356152 -1388746 + L1MB8 LINE L1 5870 6052 -126 664 175 44 12 chr13 118356158 118356318 -1388580 + L1MB8 LINE L1 6005 6169 -9 2520 178 170 29 chr13 118356510 118357138 -1387760 + LTR62 LTR ERVK 1 717 -2 1471 78 11 0 chr13 118362328 118362519 -1382379 + MER107 DNA MER1_type 5 197 0 5263 135 41 12 chr13 118364692 118365537 -1379361 - MER4D LTR ERV1 -2 870 1 323 172 43 43 chr13 118366977 118367070 -1377828 - Tigger7 DNA MER2_type -8 2479 2387 * 331 172 43 43 chr13 118367058 118367151 -1377747 - Tigger7 DNA MER2_type -8 2479 2387 * 2247 184 44 42 chr13 118367139 118367825 -1377073 - Tigger7 DNA MER2_type -8 2479 10 2581 48 0 0 chr13 118370006 118370316 -1374582 + AluY SINE Alu 1 310 -1 2206 101 3 0 chr13 118370367 118370665 -1374233 + AluSx SINE Alu 1 299 -13 280 279 146 55 chr13 118370891 118371056 -1373842 + MER63 DNA MER1_type 844 1023 -39 595 268 42 5 chr13 118373616 118373806 -1371092 + MER58 DNA MER1_type 1 197 -2223 219 325 41 41 chr13 118374340 118374463 -1370435 + MIR SINE MIR 60 182 -80 21 0 0 0 chr13 118375135 118375156 -1369742 + AT_rich Low_complexity Low_complexity 1 21 0 505 294 96 66 chr13 118375191 118375621 -1369277 + L1MC/D LINE L1 5263 5750 -636 678 171 125 26 chr13 118376983 118377135 -1367763 + AluJb SINE Alu 123 289 -23 1910 118 7 0 chr13 118377188 118377487 -1367411 - AluSx SINE Alu 0 312 12 342 312 57 9 chr13 118377504 118377647 -1367251 + L1M LINE L1 5254 5403 -2382 221 218 282 18 chr13 118377854 118377964 -1366934 + MIR SINE MIR 114 252 -10 1715 195 0 0 chr13 118380210 118380513 -1364385 + AluJo SINE Alu 1 303 -9 1786 128 147 3 chr13 118380642 118380954 -1363944 - MER46B DNA MER2_type 0 236 5 2050 122 0 7 chr13 118381018 118381322 -1363576 - AluSx SINE Alu -10 302 1 522 218 150 39 chr13 118381879 118382018 -1362880 + L1MB2 LINE L1 5272 5394 -784 1432 176 26 64 chr13 118382018 118382330 -1362568 + AluJo SINE Alu 1 300 -12 522 218 150 39 chr13 118382330 118382426 -1362472 + L1MB2 LINE L1 5394 5527 -651 1067 251 41 10 chr13 118382540 118383111 -1361787 + L1MB2 LINE L1 5501 6169 -2 2155 94 3 0 chr13 118383512 118383799 -1361099 + AluSx SINE Alu 1 288 -24 355 375 25 0 chr13 118383892 118384052 -1360846 - MIR SINE MIR -11 251 88 3818 204 34 26 chr13 118388384 118388403 -1356495 - L1MB7 LINE L1 -11 6173 6156 2019 89 25 0 chr13 118388403 118388684 -1356214 + AluSx SINE Alu 1 288 -24 264 77 0 0 chr13 118388684 118388723 -1356175 + (TA)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr13 118388722 118388747 -1356151 + (GA)n Simple_repeat Simple_repeat 2 26 0 3818 204 34 26 chr13 118388723 118389851 -1355047 - L1MB7 LINE L1 -27 6157 5043 218 362 35 35 chr13 118389858 118389999 -1354899 - L2 LINE L2 -8 3264 3124 180 77 0 0 chr13 118390138 118390164 -1354734 + (AGGGGG)n Simple_repeat Simple_repeat 2 27 0 2112 124 0 3 chr13 118390482 118390780 -1354118 - AluSq SINE Alu -16 297 1 309 161 73 88 chr13 118391083 118391220 -1353678 + L2 LINE L2 2641 2775 -539 235 183 39 77 chr13 118391243 118391347 -1353551 + L2 LINE L2 2883 2982 -290 522 295 168 21 chr13 118391470 118391850 -1353048 - L1ME3A LINE L1 -5 6165 5730 306 291 81 0 chr13 118391851 118391955 -1352943 - L1ME3A LINE L1 -558 5608 5492 496 259 15 0 chr13 118391958 118392093 -1352805 - L1ME3A LINE L1 -882 5264 5128 443 311 72 21 chr13 118392497 118392732 -1352166 - MIR SINE MIR -13 249 3 30 59 0 0 chr13 118395085 118395136 -1349762 + AT_rich Low_complexity Low_complexity 1 51 0 2002 130 0 3 chr13 118395955 118396262 -1348636 + AluSx SINE Alu 1 306 -6 196 250 16 0 chr13 118396365 118396493 -1348405 + GA-rich Low_complexity Low_complexity 1 130 0 473 127 0 0 chr13 118397605 118397668 -1347230 + AluS SINE Alu 2 64 -249 1749 120 8 0 chr13 118397671 118397937 -1346961 + AluSx SINE Alu 33 300 -12 601 241 47 0 chr13 118400682 118400852 -1344046 + MER58A DNA MER1_type 47 224 0 200 381 30 22 chr13 118401333 118401467 -1343431 + L2 LINE L2 3138 3272 0 2176 99 3 0 chr13 118401527 118401819 -1343079 + AluSx SINE Alu 5 297 -15 298 263 20 61 chr13 118404056 118404155 -1340743 + MER77 LTR ERV1 103 197 -408 249 305 128 55 chr13 118404128 118404292 -1340606 + MER21B LTR ERV1 98 273 -590 * 439 319 64 15 chr13 118404464 118404668 -1340230 + MER21B LTR ERV1 494 707 -156 248 377 0 0 chr13 118404668 118404782 -1340116 + G-rich Low_complexity Low_complexity 3 116 0 1158 164 48 0 chr13 118405097 118405305 -1339593 + MER49 LTR ERV1 1 218 -705 1835 118 0 4 chr13 118405305 118405575 -1339323 + AluSq SINE Alu 1 269 -44 1075 92 24 9 chr13 118405693 118405866 -1339032 + MER4E LTR ERV1 601 869 -3 1207 188 161 30 chr13 118406581 118406917 -1337981 + LTR51 LTR ERV1 1 380 -291 553 222 63 0 chr13 118406923 118407049 -1337849 + MER49 LTR ERV1 27 160 -763 2118 90 0 0 chr13 118407077 118407354 -1337544 + AluSc SINE Alu 26 302 -7 346 182 0 15 chr13 118407360 118407426 -1337472 + MER4B LTR ERV1 241 305 -305 1285 254 38 6 chr13 118407505 118407844 -1337054 + MER4D LTR ERV1 554 903 0 284 324 93 14 chr13 118407854 118407993 -1336905 - L1ME LINE L1 -343 5778 5629 1373 176 169 30 chr13 118408009 118408436 -1336462 + LTR54B LTR ERV1 11 496 -2 2033 114 0 29 chr13 118408928 118409236 -1335662 + AluSq SINE Alu 1 299 -14 2141 115 3 0 chr13 118409809 118410113 -1334785 - AluSq SINE Alu -8 305 1 354 279 29 0 chr13 118412506 118412678 -1332220 + (AGGTG)n Simple_repeat Simple_repeat 4 180 0 1401 217 111 5 chr13 118412947 118413353 -1331545 + L1MB3 LINE L1 5732 6180 -3 314 28 0 0 chr13 118414115 118414151 -1330747 + (T)n Simple_repeat Simple_repeat 1 36 0 275 343 30 24 chr13 118414485 118414654 -1330244 + G-rich Low_complexity Low_complexity 2 171 0 2271 97 0 0 chr13 118415115 118415414 -1329484 - AluSg SINE Alu -11 299 1 737 166 0 83 chr13 118417063 118417208 -1327690 - FLAM_A SINE Alu 0 133 1 189 0 0 0 chr13 118417543 118417564 -1327334 + (TGGG)n Simple_repeat Simple_repeat 2 22 0 5506 77 34 5 chr13 118418649 118419391 -1325507 - MER4E LTR ERV1 -1 765 3 9529 90 12 17 chr13 118420144 118421092 -1323806 - HSMAR1 DNA Mariner 0 1287 346 2194 120 3 0 chr13 118421092 118421401 -1323497 - AluSq SINE Alu -3 310 1 9529 90 12 17 chr13 118421401 118421746 -1323152 - HSMAR1 DNA Mariner -941 346 1 756 193 48 0 chr13 118422514 118422659 -1322239 + L1MB4 LINE L1 6029 6180 0 995 251 86 30 chr13 118425094 118425432 -1319466 + MLT1A2 LTR MaLR 1 357 -17 23 0 0 0 chr13 118426108 118426131 -1318767 + GC_rich Low_complexity Low_complexity 1 23 0 2200 108 0 0 chr13 118426167 118426473 -1318425 - AluSx SINE Alu -6 306 1 2170 41 0 4 chr13 118426717 118426986 -1317912 - AluY SINE Alu -43 268 1 311 278 9 65 chr13 118427799 118427907 -1316991 + MER94 DNA DNA 1 102 -32 1827 129 0 34 chr13 118429512 118429835 -1315063 + AluSx SINE Alu 1 313 0 1870 137 23 10 chr13 118430666 118430973 -1313925 + AluSx SINE Alu 1 311 -1 303 301 96 0 chr13 118432372 118432518 -1312380 - MIR SINE MIR -87 175 16 517 271 76 0 chr13 118434244 118434388 -1310510 - MIR SINE MIR -43 219 65 2238 85 7 0 chr13 118434565 118434859 -1310039 - AluSq SINE Alu -17 296 1 316 353 108 27 chr13 118435707 118435965 -1308933 - HAL1 LINE L1 -1247 1260 982 2132 112 3 0 chr13 118435987 118436291 -1308607 - AluSx SINE Alu -6 306 2 1112 228 28 0 chr13 118436294 118436544 -1308354 - MLT1E1 LTR MaLR 0 654 398 2057 82 0 4 chr13 118436656 118436923 -1307975 - AluSq SINE Alu -47 266 1 218 248 57 0 chr13 118436999 118437104 -1307794 + (CACAC)n Simple_repeat Simple_repeat 5 115 0 216 0 0 0 chr13 118439085 118439109 -1305789 + (CA)n Simple_repeat Simple_repeat 2 25 0 2311 67 0 3 chr13 118439111 118439410 -1305488 - AluSg SINE Alu -12 298 1 21 36 0 0 chr13 118440208 118440236 -1304662 + GC_rich Low_complexity Low_complexity 1 28 0 26 88 0 0 chr13 118440256 118440324 -1304574 + GC_rich Low_complexity Low_complexity 1 68 0 277 240 20 10 chr13 118440626 118440726 -1304172 + C-rich Low_complexity Low_complexity 1 101 0 346 318 75 40 chr13 118441890 118442142 -1302756 + LTR33 LTR ERVL 256 516 -5 599 281 113 26 chr13 118442382 118442692 -1302206 + MLT1L LTR MaLR 131 467 -148 1415 189 108 44 chr13 118442872 118443215 -1301683 + MLT1A1 LTR MaLR 1 365 0 623 320 77 26 chr13 118443321 118443686 -1301212 - MLT1H LTR MaLR -118 437 38 2123 136 0 0 chr13 118444662 118444972 -1299926 - AluSx SINE Alu -2 310 1 265 224 42 200 chr13 118445211 118445283 -1299615 - MER5B DNA MER1_type 0 178 145 1443 138 116 30 chr13 118445283 118445551 -1299347 + AluJo SINE Alu 1 291 -21 265 224 42 200 chr13 118445551 118445643 -1299255 - MER5B DNA MER1_type -33 145 40 1387 216 71 48 chr13 118446009 118446430 -1298468 - LTR47B LTR ERVL 0 443 13 2283 100 3 0 chr13 118447507 118447816 -1297082 - AluSg SINE Alu 0 310 1 1271 173 65 50 chr13 118447914 118448296 -1296602 + L1MB3 LINE L1 5795 6182 -1 2392 61 0 0 chr13 118448321 118448614 -1296284 - AluY SINE Alu -18 293 1 1570 102 0 57 chr13 118448702 118448948 -1295950 + AluSg/x SINE Alu 70 301 -11 1708 176 3 3 chr13 118448949 118449255 -1295643 + AluJb SINE Alu 1 306 -6 180 0 0 0 chr13 118451475 118451495 -1293403 + (TCTCCC)n Simple_repeat Simple_repeat 1 20 0 3621 53 8 19 chr13 118451498 118452011 -1292887 + SVA Other Other 2 508 -878 1823 45 0 0 chr13 118452111 118452333 -1292565 + SVA Other Other 1164 1385 -1 21 36 0 0 chr13 118452333 118452361 -1292537 + AT_rich Low_complexity Low_complexity 1 28 0 384 276 132 68 chr13 118452369 118452393 -1292505 - HAL1 LINE L1 0 2507 2486 2049 111 3 10 chr13 118452393 118452690 -1292208 - AluSx SINE Alu -17 295 1 384 276 132 68 chr13 118452690 118453141 -1291757 - HAL1 LINE L1 -21 2486 1980 2416 78 3 0 chr13 118453141 118453450 -1291448 - AluSq SINE Alu -3 310 1 384 276 132 68 chr13 118453450 118453603 -1291295 - HAL1 LINE L1 -527 1980 1838 282 273 39 0 chr13 118453656 118453733 -1291165 - HAL1 LINE L1 -590 1917 1838 843 280 103 12 chr13 118453786 118454125 -1290773 - HAL1 LINE L1 -590 1917 1548 21 0 0 0 chr13 118454896 118454917 -1289981 + AT_rich Low_complexity Low_complexity 1 21 0 186 133 0 0 chr13 118455427 118455457 -1289441 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 2137 222 98 56 chr13 118456103 118456728 -1288170 + MLT1E1 LTR MaLR 4 654 0 2088 106 3 34 chr13 118456731 118457020 -1287878 + AluSx SINE Alu 2 282 -30 555 56 0 0 chr13 118457020 118457091 -1287807 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 2088 106 3 34 chr13 118457091 118457122 -1287776 + AluSx SINE Alu 282 312 0 320 278 191 12 chr13 118457153 118457315 -1287583 + HAL1 LINE L1 1136 1326 -1181 2331 83 3 0 chr13 118458178 118458479 -1286419 + AluSx SINE Alu 1 302 -10 392 347 68 0 chr13 118458639 118458815 -1286083 + MIR SINE MIR 36 223 -39 2357 81 3 3 chr13 118459376 118459684 -1285214 + AluSx SINE Alu 1 308 -4 1836 121 86 0 chr13 118460668 118460948 -1283950 - AluSx SINE Alu -8 304 1 21 0 0 0 chr13 118461878 118461899 -1282999 + AT_rich Low_complexity Low_complexity 1 21 0 2153 96 14 10 chr13 118461908 118462201 -1282697 - AluSx SINE Alu -18 294 1 2411 239 41 61 chr13 118462323 118463197 -1281701 - L1M4 LINE L1 -1924 4222 3366 309 259 0 0 chr13 118463424 118463598 -1281300 + (CA)n Simple_repeat Simple_repeat 1 174 0 526 286 0 5 chr13 118463614 118464036 -1280862 + (CA)n Simple_repeat Simple_repeat 1 419 0 384 257 0 0 chr13 118464094 118464500 -1280398 + (CA)n Simple_repeat Simple_repeat 1 406 0 222 269 0 0 chr13 118464513 118464647 -1280251 + (CA)n Simple_repeat Simple_repeat 1 134 0 261 254 0 0 chr13 118464679 118464793 -1280105 + (CA)n Simple_repeat Simple_repeat 2 115 0 402 265 184 0 chr13 118465746 118465882 -1279016 - MER5A DNA MER1_type 0 189 29 402 233 316 14 chr13 118466209 118466424 -1278474 + MER20B DNA MER1_type 7 286 -497 2014 107 7 39 chr13 118466425 118466733 -1278165 - AluSq SINE Alu -15 298 1 2103 113 7 0 chr13 118466737 118467030 -1277868 - AluSx SINE Alu -17 295 1 6177 146 56 15 chr13 118467157 118467976 -1276922 + L1MA6 LINE L1 4193 4977 -1323 2260 96 0 0 chr13 118467976 118468277 -1276621 + AluY SINE Alu 2 302 -9 6177 146 56 15 chr13 118468277 118469421 -1275477 + L1MA6 LINE L1 4977 6255 -45 354 100 83 0 chr13 118469423 118469483 -1275415 + MER41A LTR ERV1 402 466 -88 258 121 35 0 chr13 118469484 118469542 -1275356 + L1MA7 LINE L1 6232 6291 0 3773 154 40 58 chr13 118469585 118469931 -1274967 + Tigger2 DNA MER2_type 1 352 -2366 2057 105 0 0 chr13 118469931 118470207 -1274691 + AluSx SINE Alu 1 276 -36 320 0 0 24 chr13 118470211 118470252 -1274646 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3773 154 40 58 chr13 118470252 118470300 -1274598 + Tigger2 DNA MER2_type 355 402 -2316 2168 107 0 3 chr13 118470300 118470610 -1274288 + AluY SINE Alu 2 310 -1 3773 154 40 58 chr13 118470610 118470967 -1273931 + Tigger2 DNA MER2_type 402 744 -1974 1085 165 99 19 chr13 118471030 118471242 -1273656 + Tigger2 DNA MER2_type 2462 2690 -28 254 267 37 30 chr13 118471284 118471419 -1273479 + MER20B DNA MER1_type 621 756 -27 330 210 25 12 chr13 118472420 118472501 -1272397 - MER81 DNA DNA -26 88 7 342 0 0 0 chr13 118473017 118473055 -1271843 + (TG)n Simple_repeat Simple_repeat 1 38 0 1086 47 0 0 chr13 118473560 118473710 -1271188 - AluSg/x SINE Alu 0 305 156 1027 66 26 46 chr13 118473747 118473898 -1271000 - LTR9 LTR ERV1 -464 148 1 21 0 0 0 chr13 118473911 118473932 -1270966 + AT_rich Low_complexity Low_complexity 1 21 0 2048 65 11 22 chr13 118474457 118474732 -1270166 + AluSq SINE Alu 38 309 -4 332 301 101 39 chr13 118474736 118475022 -1269876 - L1MC/D LINE L1 -2009 5799 5496 1869 113 41 3 chr13 118475290 118475581 -1269317 - AluSx SINE Alu -10 302 1 2064 89 11 0 chr13 118475921 118476225 -1268673 - AluSx SINE Alu 0 307 1 825 265 91 41 chr13 118476225 118476642 -1268256 - L1MC/D LINE L1 -2418 3728 3274 269 174 159 0 chr13 118476783 118476852 -1268046 + MER116 DNA Mariner 1 80 0 2783 108 137 69 chr13 118477168 118477730 -1267168 + MER4A LTR ERV1 1 600 0 320 244 67 0 chr13 118479934 118480024 -1264874 - MIR3 SINE MIR -35 173 78 2171 115 0 0 chr13 118480098 118480410 -1264488 - AluSx SINE Alu 0 312 1 243 288 0 0 chr13 118481358 118481424 -1263474 + L2 LINE L2 3248 3313 0 2297 83 7 0 chr13 118481438 118481739 -1263159 + AluSx SINE Alu 1 303 -9 1948 139 0 3 chr13 118482390 118482692 -1262206 + AluSg SINE Alu 6 306 -4 1920 87 0 11 chr13 118483775 118484040 -1260858 + AluSx SINE Alu 35 296 -16 523 311 32 5 chr13 118484462 118484652 -1260246 - MLT1C LTR MaLR -10 457 263 241 408 0 0 chr13 118484913 118485065 -1259833 + (CACCAT)n Simple_repeat Simple_repeat 6 157 0 455 210 91 101 chr13 118485065 118485142 -1259756 - MLT1C LTR MaLR -186 281 205 507 17 0 0 chr13 118485142 118485202 -1259696 + (TG)n Simple_repeat Simple_repeat 2 61 0 1967 118 24 0 chr13 118485207 118485503 -1259395 - AluSx SINE Alu -9 303 1 455 210 91 101 chr13 118485503 118485603 -1259295 - MLT1C LTR MaLR -266 201 98 2246 100 0 0 chr13 118485603 118485903 -1258995 - AluSc SINE Alu -9 300 1 455 210 91 101 chr13 118485903 118485937 -1258961 - MLT1C LTR MaLR -369 98 65 1768 127 25 4 chr13 118486658 118486971 -1257927 + AluSx SINE Alu 1 319 0 253 286 99 23 chr13 118486971 118487176 -1257722 + L1MC5 LINE L1 7612 7842 -200 203 171 0 0 chr13 118487218 118487259 -1257639 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 250 266 125 0 chr13 118487915 118487979 -1256919 - MIR SINE MIR -183 79 8 534 108 14 0 chr13 118488111 118488185 -1256713 - AluS SINE Alu -233 79 5 478 223 261 5 chr13 118488199 118488383 -1256515 - L1MDb LINE L1 -4504 1902 1672 2677 214 42 5 chr13 118488395 118489179 -1255719 - L1MDb LINE L1 -4818 1588 776 297 221 39 0 chr13 118490997 118491074 -1253824 + MIR SINE MIR 51 130 -78 252 86 0 0 chr13 118491589 118491624 -1253274 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2175 69 0 7 chr13 118491630 118491907 -1252991 - AluSx SINE Alu -37 275 1 1670 191 0 0 chr13 118492081 118492380 -1252518 + AluJb SINE Alu 1 299 -13 231 303 15 0 chr13 118492793 118492859 -1252039 + CT-rich Low_complexity Low_complexity 4 70 0 1918 123 3 10 chr13 118492944 118493236 -1251662 - AluY SINE Alu -20 291 2 365 309 103 10 chr13 118494525 118494729 -1250169 + MIR SINE MIR 21 243 -19 1904 140 3 0 chr13 118495466 118495758 -1249140 - AluSx SINE Alu -7 305 13 21 0 0 0 chr13 118495765 118495786 -1249112 + AT_rich Low_complexity Low_complexity 1 21 0 744 172 78 42 chr13 118496641 118496833 -1248065 + L1MC2 LINE L1 6131 6329 -15 2003 94 3 47 chr13 118496857 118497175 -1247723 + AluSg SINE Alu 1 304 -6 1722 206 21 21 chr13 118497182 118497565 -1247333 + L1MC3 LINE L1 6957 7339 -446 757 287 77 55 chr13 118497566 118497713 -1247185 - L1MEc LINE L1 -4122 2274 2132 2187 84 0 13 chr13 118497713 118498012 -1246886 - AluSc SINE Alu -13 296 2 757 287 77 55 chr13 118498012 118498279 -1246619 - L1MEc LINE L1 -4264 2132 1851 659 308 64 26 chr13 118498331 118499048 -1245850 - L1MEc LINE L1 -4642 1754 1011 233 305 32 21 chr13 118499263 118499358 -1245540 - L1MEc LINE L1 -5463 742 647 255 284 97 39 chr13 118499690 118499845 -1245053 - L1MEc LINE L1 -5906 299 136 4112 200 111 17 chr13 118499852 118501180 -1243718 + L1MDa LINE L1 1416 2888 -3652 2338 68 0 3 chr13 118501180 118501475 -1243423 + AluY SINE Alu 1 294 -17 4112 200 111 17 chr13 118501475 118501532 -1243366 + L1MDa LINE L1 2888 2938 -3602 330 135 0 0 chr13 118501663 118501715 -1243183 + (G)n Simple_repeat Simple_repeat 1 52 0 1676 228 69 30 chr13 118501828 118502495 -1242403 + L1MDa LINE L1 2916 3608 -2932 1071 272 106 48 chr13 118502501 118503317 -1241581 - L1 LINE L1 -2119 4027 3259 1780 133 11 0 chr13 118503317 118503588 -1241310 - AluSx SINE Alu -12 300 27 1071 272 106 48 chr13 118503588 118503599 -1241299 - L1 LINE L1 -2887 3259 3250 1797 133 4 0 chr13 118503599 118503870 -1241028 - AluSx SINE Alu -39 273 2 1071 272 106 48 chr13 118503870 118503979 -1240919 - L1 LINE L1 -2896 3250 3036 1055 263 163 33 chr13 118504121 118504691 -1240207 + MER76 LTR ERV 32 675 -13 295 151 70 52 chr13 118504713 118504810 -1240088 - L1MC3 LINE L1 -132 7653 6132 2074 83 56 0 chr13 118506732 118507020 -1237878 + AluY SINE Alu 1 304 -7 327 333 41 18 chr13 118507377 118507548 -1237350 - HERVR LTR ERV1 -3176 4216 4075 242 170 43 0 chr13 118508202 118508249 -1236649 - MLT1H1 LTR MaLR -308 247 199 23 33 0 0 chr13 118508387 118508417 -1236481 + GC_rich Low_complexity Low_complexity 1 30 0 289 215 5 89 chr13 118509204 118509395 -1235503 + G-rich Low_complexity Low_complexity 4 178 0 605 247 253 23 chr13 118510212 118510512 -1234386 - L2 LINE L2 -42 3271 2903 1976 117 3 10 chr13 118510753 118511051 -1233847 - AluSx SINE Alu -16 296 1 231 220 0 0 chr13 118511051 118511110 -1233788 + L1ME2 LINE L1 2099 2157 -4383 198 0 0 0 chr13 118511112 118511134 -1233764 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1301 98 5 44 chr13 118511141 118511344 -1233554 + AluSg/x SINE Alu 85 279 -33 198 71 0 0 chr13 118511344 118511372 -1233526 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3187 230 76 32 chr13 118511375 118511840 -1233058 + L1ME2 LINE L1 2160 2603 -3955 2022 128 61 19 chr13 118511840 118512200 -1232698 - THE1C LTR MaLR 0 375 1 3187 230 76 32 chr13 118512200 118513187 -1231711 + L1ME2 LINE L1 2603 3544 -3014 1808 162 0 0 chr13 118513187 118513502 -1231396 + AluJb SINE Alu 1 315 0 3187 230 76 32 chr13 118513502 118514068 -1230830 + L1ME2 LINE L1 3544 4083 -2475 1934 91 7 14 chr13 118514068 118514344 -1230554 + AluSp SINE Alu 30 303 -10 3187 230 76 32 chr13 118514344 118514512 -1230386 + L1ME2 LINE L1 4083 4242 -2316 1761 162 0 10 chr13 118514512 118514814 -1230084 - AluJb SINE Alu -13 299 1 3187 230 76 32 chr13 118514814 118514922 -1229976 + L1ME2 LINE L1 4242 6549 -9 2173 111 3 0 chr13 118514972 118515278 -1229620 + AluSx SINE Alu 1 307 -5 201 292 111 14 chr13 118516259 118516331 -1228567 + MER5B DNA MER1_type 89 167 -11 1089 179 10 14 chr13 118516623 118516830 -1228068 - AluSg/x SINE Alu -1 311 106 329 288 87 43 chr13 118516851 118517035 -1227863 + L2 LINE L2 1854 2045 -1269 274 287 183 17 chr13 118517377 118517492 -1227406 + L2 LINE L2 3139 3272 0 418 274 147 5 chr13 118518151 118518348 -1226550 - MLT1D LTR MaLR -8 497 273 1720 267 38 10 chr13 118518357 118519033 -1225865 - L1MDa LINE L1 -3271 3269 2576 232 324 22 15 chr13 118519381 118519517 -1225381 - L1MDa LINE L1 -6328 212 76 699 260 93 38 chr13 118520789 118521232 -1223666 - HAL1 LINE L1 -1294 1213 747 14054 111 53 28 chr13 118521240 118521660 -1223238 + Tigger1 DNA MER2_type 22 430 -1988 1480 76 7 134 chr13 118521660 118521936 -1222962 + L1PA8A LINE L1 5891 6131 0 14054 111 53 28 chr13 118521936 118523759 -1221139 + Tigger1 DNA MER2_type 430 2322 -96 321 333 89 18 chr13 118523965 118524133 -1220765 - HAL1 LINE L1 -2089 418 239 529 278 18 45 chr13 118524187 118524410 -1220488 - HAL1 LINE L1 -2289 218 2 201 121 0 0 chr13 118524999 118525032 -1219866 + (TATG)n Simple_repeat Simple_repeat 3 35 0 183 305 84 64 chr13 118526940 118527189 -1217709 - L3 LINE CR1 -89 1488 1235 22 0 0 0 chr13 118527474 118527496 -1217402 + AT_rich Low_complexity Low_complexity 1 22 0 2262 81 0 3 chr13 118528141 118528439 -1216459 - AluY SINE Alu -14 297 1 208 344 107 0 chr13 118528646 118528777 -1216121 - MIR SINE MIR -49 213 69 843 154 0 0 chr13 118529427 118529557 -1215341 - FLAM_A SINE Alu -3 130 1 205 313 84 0 chr13 118529639 118529722 -1215176 - MIR3 SINE MIR -27 181 92 2198 68 0 39 chr13 118530203 118530510 -1214388 - AluY SINE Alu -16 295 1 199 260 58 48 chr13 118532479 118532583 -1212315 + L2 LINE L2 2379 2483 -831 397 287 104 6 chr13 118532593 118532757 -1212141 + MIR SINE MIR 32 211 -51 2688 3 0 0 chr13 118533611 118533907 -1210991 - AluYa5 SINE Alu -15 296 1 2036 115 7 0 chr13 118533907 118534203 -1210695 - AluSx SINE Alu -14 298 1 268 293 89 32 chr13 118538367 118538490 -1206408 + L2 LINE L2 3184 3313 0 241 241 112 26 chr13 118540128 118540244 -1204654 - LTR33A LTR ERVL -8 515 390 222 330 113 29 chr13 118541314 118541512 -1203386 + MIR SINE MIR 2 207 -36 2150 139 9 35 chr13 118541900 118542246 -1202652 + MER1B DNA MER1_type 1 337 0 339 288 34 69 chr13 118542298 118542486 -1202412 - MIR SINE MIR -62 146 4 2304 72 0 13 chr13 118542933 118543239 -1201659 - AluY SINE Alu -9 302 1 21 36 0 0 chr13 118543786 118543814 -1201084 + AT_rich Low_complexity Low_complexity 1 28 0 1306 94 0 0 chr13 118544039 118544219 -1200679 - AluY SINE Alu -3 308 129 2005 126 7 13 chr13 118545150 118545459 -1199439 - AluSx SINE Alu -5 307 1 285 29 0 0 chr13 118546039 118546073 -1198825 + (A)n Simple_repeat Simple_repeat 1 34 0 298 250 11 33 chr13 118546210 118546302 -1198596 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 260 283 50 0 chr13 118546671 118546770 -1198128 - L1ME LINE L1 -285 5885 5782 1779 232 40 16 chr13 118546771 118547220 -1197678 - LTR40b LTR ERVL 0 462 3 192 318 0 0 chr13 118547838 118547904 -1196994 + MER5B DNA MER1_type 2 67 -111 345 250 45 9 chr13 118548025 118548137 -1196761 + MER5A DNA MER1_type 41 156 -33 3202 139 72 0 chr13 118548557 118549074 -1195824 - MER41C LTR ERV1 0 554 1 218 340 39 19 chr13 118549833 118549936 -1194962 + MIR SINE MIR 80 184 -78 673 181 91 73 chr13 118551457 118551689 -1193209 + L1MC4 LINE L1 7619 7854 -188 393 244 43 0 chr13 118551847 118551966 -1192932 + L1MC4 LINE L1 7880 7986 -9 1679 249 168 34 chr13 118552123 118552837 -1192061 + MER21B LTR ERV1 1 810 -53 446 298 73 20 chr13 118552872 118553120 -1191778 - L1MDa LINE L1 -3740 2800 2540 2005 102 20 3 chr13 118553120 118553414 -1191484 + AluSq SINE Alu 1 299 -14 232 282 14 0 chr13 118553416 118553487 -1191411 - L1MDa LINE L1 -4697 1843 1772 1351 148 0 0 chr13 118553494 118553697 -1191201 + MLT1B LTR MaLR 188 390 0 489 270 6 46 chr13 118553704 118553778 -1191120 - L1MDa LINE L1 -5897 633 558 1640 189 3 3 chr13 118553778 118554079 -1190819 - AluJo SINE Alu -11 301 1 489 270 6 46 chr13 118554079 118554178 -1190720 - L1MDa LINE L1 -5972 558 467 2007 120 3 0 chr13 118554191 118554490 -1190408 - AluSx SINE Alu -2 310 11 2129 284 72 30 chr13 118554626 118554696 -1190202 - L1MEc LINE L1 -1908 4307 4241 306 0 0 0 chr13 118554696 118554730 -1190168 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2129 284 72 30 chr13 118554730 118555122 -1189776 - L1MEc LINE L1 -1974 4241 3867 1961 94 58 0 chr13 118555122 118555398 -1189500 - AluSg SINE Alu -18 292 1 2129 284 72 30 chr13 118555398 118556046 -1188852 - L1MEc LINE L1 -2348 3867 3127 2059 104 0 0 chr13 118556046 118556335 -1188563 - AluSx SINE Alu -23 289 1 2129 284 72 30 chr13 118556335 118556563 -1188335 - L1MEc LINE L1 -3088 3127 2910 495 201 45 84 chr13 118556577 118556731 -1188167 + MER106B DNA MER1_type 1 148 -911 212 175 0 0 chr13 118556740 118556780 -1188118 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 2032 104 10 0 chr13 118556861 118557158 -1187740 + AluSx SINE Alu 1 300 -12 250 250 100 0 chr13 118557224 118557304 -1187594 - L1MEc LINE L1 -3451 2764 2677 484 272 52 81 chr13 118557436 118557949 -1186949 - L1MEc LINE L1 -3609 2606 2147 2148 79 3 10 chr13 118557949 118558240 -1186658 - AluSx SINE Alu -18 294 6 484 272 52 81 chr13 118558240 118558362 -1186536 - L1MEc LINE L1 -4068 2147 2023 28 61 0 0 chr13 118558487 118558536 -1186362 + AT_rich Low_complexity Low_complexity 1 49 0 245 317 19 10 chr13 118558700 118558804 -1186094 - L1MEc LINE L1 -4641 1755 1651 1511 160 18 36 chr13 118558825 118559106 -1185792 + AluJo SINE Alu 3 278 -34 252 0 0 0 chr13 118559106 118559134 -1185764 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 342 0 0 0 chr13 118559133 118559171 -1185727 + (CA)n Simple_repeat Simple_repeat 1 38 0 466 229 36 50 chr13 118559587 118559727 -1185171 - MLT1A1 LTR MaLR -3 362 225 2096 106 3 7 chr13 118559785 118560086 -1184812 + AluSx SINE Alu 1 300 -12 349 272 0 0 chr13 118560114 118560195 -1184703 - MLT1A1 LTR MaLR -280 94 14 299 326 68 32 chr13 118560314 118560593 -1184305 - HERV16 LTR ERVL -4346 650 362 1069 261 92 17 chr13 118560820 118561168 -1183730 + MLT1A2 LTR MaLR 1 374 0 291 232 108 65 chr13 118561233 118561418 -1183480 - LTR16C LTR ERVL -8 483 291 816 240 150 7 chr13 118562706 118562993 -1181905 - L1MD3 LINE L1 -177 7818 7491 354 257 71 36 chr13 118563689 118563829 -1181069 - MIR SINE MIR 0 262 118 219 255 85 0 chr13 118564123 118564217 -1180681 + L2 LINE L2 3168 3269 -3 2343 106 0 7 chr13 118565427 118565728 -1179170 - AluSx SINE Alu -13 299 1 354 59 0 132 chr13 118565728 118565796 -1179102 - AluJo SINE Alu -163 139 81 2259 91 14 0 chr13 118565854 118566150 -1178748 - AluSp SINE Alu -13 300 1 716 188 69 120 chr13 118566557 118566894 -1178004 - MER51C LTR ERV1 -1 639 328 399 224 9 56 chr13 118567028 118567135 -1177763 + MIR SINE MIR 114 215 -47 2081 113 0 32 chr13 118567491 118567801 -1177097 + AluSq SINE Alu 1 300 -13 274 295 33 33 chr13 118567825 118567947 -1176951 - MIR SINE MIR -121 141 20 1100 262 33 27 chr13 118569401 118569737 -1175161 - MER4D LTR ERV1 0 903 566 255 179 54 36 chr13 118569865 118569921 -1174977 - LTR39 LTR ERV1 -410 373 317 236 178 0 22 chr13 118570505 118570550 -1174348 - Alu SINE Alu -138 161 118 26 0 0 0 chr13 118570854 118570880 -1174018 + AT_rich Low_complexity Low_complexity 1 26 0 394 285 16 8 chr13 118570978 118571101 -1173797 - L1MC4 LINE L1 0 8042 7919 238 294 51 62 chr13 118572451 118572628 -1172270 + MIR SINE MIR 18 192 -70 974 174 22 10 chr13 118573110 118573342 -1171556 + L1MB7 LINE L1 1269 1756 -4809 * 1372 214 51 23 chr13 118573340 118573431 -1171467 + L1MB7 LINE L1 1598 1685 -4961 1093 196 64 0 chr13 118573431 118573651 -1171247 - MER46A DNA MER2_type -1 235 2 1372 214 51 23 chr13 118573651 118573909 -1170989 + L1MB7 LINE L1 1685 1957 -4689 * 5628 201 51 68 chr13 118573888 118574718 -1170180 + L1MB7 LINE L1 3884 4726 -1956 1654 169 21 17 chr13 118574718 118575008 -1169890 + AluJo SINE Alu 1 291 -21 5628 201 51 68 chr13 118575008 118577029 -1167869 + L1MB7 LINE L1 4726 6671 -11 2342 60 0 3 chr13 118577218 118577530 -1167368 - AluY SINE Alu 0 311 1 193 250 31 0 chr13 118577555 118577619 -1167279 - MER5B DNA MER1_type -112 66 1 1205 86 6 0 chr13 118577814 118577976 -1166922 + L1PB1 LINE L1 5988 6150 -1 29 0 0 0 chr13 118578075 118578104 -1166794 + AT_rich Low_complexity Low_complexity 1 29 0 670 171 85 101 chr13 118578124 118578323 -1166575 - Charlie4 DNA MER1_type -1727 234 39 286 164 16 33 chr13 118579450 118579511 -1165387 - AluSg/x SINE Alu -123 179 120 1937 103 17 45 chr13 118579662 118579972 -1164926 - AluSx SINE Alu 0 302 1 753 261 92 28 chr13 118580708 118581068 -1163830 - MER20B DNA MER1_type -141 642 260 816 163 72 6 chr13 118581092 118581258 -1163640 + Charlie1 DNA MER1_type 2583 2759 -2 463 293 23 0 chr13 118582280 118582413 -1162485 - MIR SINE MIR -96 166 31 194 323 31 73 chr13 118583101 118583197 -1161701 + L2 LINE L2 3179 3270 -2 22 0 0 0 chr13 118583417 118583439 -1161459 + AT_rich Low_complexity Low_complexity 1 22 0 2026 143 3 0 chr13 118583702 118583995 -1160903 + AluJb SINE Alu 1 294 -18 437 206 272 26 chr13 118584380 118584608 -1160290 - L2 LINE L2 -529 2785 2502 355 207 207 84 chr13 118584626 118584949 -1159949 - HAL1 LINE L1 -862 1645 1283 667 174 43 0 chr13 118584972 118585087 -1159811 - FLAM_C SINE Alu -17 126 7 1518 245 44 20 chr13 118585227 118585735 -1159163 - L1ME1 LINE L1 -231 5935 5516 752 250 75 18 chr13 118586125 118586569 -1158329 - L1ME1 LINE L1 -629 5537 4987 4569 49 42 22 chr13 118586569 118586860 -1158038 - LTR14B LTR ERVK 0 608 324 2751 36 0 0 chr13 118586860 118587169 -1157729 - AluY SINE Alu -2 309 1 4569 49 42 22 chr13 118587169 118587470 -1157428 - LTR14B LTR ERVK -284 324 4 752 250 75 18 chr13 118587470 118587517 -1157381 - L1ME1 LINE L1 -1179 4987 4944 298 253 11 35 chr13 118587593 118587680 -1157218 + MER5B DNA MER1_type 41 125 -53 2508 224 88 5 chr13 118587681 118588329 -1156569 - L1MC3 LINE L1 -2 7783 7082 784 207 88 70 chr13 118588329 118588759 -1156139 - L1ME1 LINE L1 -2800 3346 2909 737 167 15 0 chr13 118588780 118588912 -1155986 - L1MA9 LINE L1 0 6312 6179 198 0 0 0 chr13 118589158 118589180 -1155718 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 7435 45 0 0 chr13 118589180 118590185 -1154713 - L1PA5 LINE L1 -6 6148 5143 180 0 0 0 chr13 118590571 118590591 -1154307 + (TTTTTA)n Simple_repeat Simple_repeat 4 23 0 289 252 122 0 chr13 118591611 118591718 -1153180 + MIR SINE MIR 73 192 -70 242 167 121 0 chr13 118592095 118592161 -1152737 + L2 LINE L2 2677 2750 -564 1963 130 7 3 chr13 118592779 118593071 -1151827 + AluSx SINE Alu 9 301 -11 27 0 0 0 chr13 118594310 118594337 -1150561 + AT_rich Low_complexity Low_complexity 1 27 0 2195 102 3 10 chr13 118594376 118594669 -1150229 + AluSx SINE Alu 1 291 -21 941 252 8 8 chr13 118596767 118597005 -1147893 + MER8 DNA MER2_type 2 239 0 417 244 107 15 chr13 118597702 118597899 -1146999 + L1MC4 LINE L1 6765 6979 -1063 264 230 14 0 chr13 118598022 118598096 -1146802 - L1M4 LINE L1 -2217 3929 3855 2027 141 0 3 chr13 118598286 118598584 -1146314 + AluJb SINE Alu 1 297 -15 327 284 170 49 chr13 118598833 118599262 -1145636 + L1MC/D LINE L1 5258 5738 -2070 405 207 30 6 chr13 118600517 118600681 -1144217 + (ATG)n Simple_repeat Simple_repeat 3 170 0 642 159 23 17 chr13 118600685 118600861 -1144037 + (ATGGTG)n Simple_repeat Simple_repeat 1 177 0 571 192 28 17 chr13 118600911 118601088 -1143810 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 743 176 26 11 chr13 118601133 118601401 -1143497 + (ATGGTG)n Simple_repeat Simple_repeat 1 272 0 1036 218 5 0 chr13 118603173 118603375 -1141523 - MER2 DNA MER2_type -135 210 8 24 67 0 0 chr13 118605447 118605492 -1139406 + AT_rich Low_complexity Low_complexity 1 45 0 384 239 120 12 chr13 118605862 118606029 -1138869 - MER5A DNA MER1_type -4 185 1 2199 109 10 13 chr13 118606887 118607191 -1137707 - AluSx SINE Alu -9 303 1 22 35 0 0 chr13 118607381 118607410 -1137488 + AT_rich Low_complexity Low_complexity 1 29 0 183 363 25 0 chr13 118608196 118608276 -1136622 - L2 LINE L2 -14 3258 3177 25 40 0 20 chr13 118609508 118609537 -1135361 + AT_rich Low_complexity Low_complexity 1 30 -19 2087 124 7 3 chr13 118609537 118609827 -1135071 - AluSx SINE Alu -21 291 1 25 40 0 20 chr13 118609827 118609847 -1135051 + AT_rich Low_complexity Low_complexity 30 49 0 1395 161 0 5 chr13 118610179 118610397 -1134501 + AluSx SINE Alu 60 276 -36 210 37 0 0 chr13 118610405 118610432 -1134466 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 191 260 117 0 chr13 118610658 118610735 -1134163 + MIR SINE MIR 95 180 -82 672 134 10 0 chr13 118611868 118611965 -1132933 - AluJ/FLAM SINE Alu -213 99 2 2133 191 56 47 chr13 118612001 118612535 -1132363 - MER44D DNA MER2_type -9 596 3 2041 132 0 3 chr13 118613593 118613882 -1131016 - AluSx SINE Alu -22 290 3 2144 122 3 26 chr13 118613885 118614197 -1130701 - AluSx SINE Alu -7 305 1 606 246 24 57 chr13 118614839 118615050 -1129848 + HsTC2c DNA Tc2 238 441 -288 407 287 26 0 chr13 118615107 118615222 -1129676 + HsTC2c DNA Tc2 606 723 -6 364 281 107 36 chr13 118615514 118615710 -1129188 + MIR SINE MIR 33 242 -20 189 319 98 81 chr13 118616910 118617217 -1127681 - L2 LINE L2 -3 3269 2958 185 344 116 31 chr13 118617300 118617750 -1127148 - L2 LINE L2 -636 2678 2191 30 59 0 0 chr13 118621361 118621412 -1123486 + AT_rich Low_complexity Low_complexity 1 51 0 315 161 0 0 chr13 118621812 118621868 -1123030 + (TA)n Simple_repeat Simple_repeat 1 56 0 1977 99 8 0 chr13 118621869 118622131 -1122767 - AluSx SINE Alu -9 303 40 2139 104 7 0 chr13 118622708 118623022 -1121876 + AluSx SINE Alu 1 312 0 2483 84 0 0 chr13 118623531 118623840 -1121058 + AluY SINE Alu 1 309 -2 287 266 54 37 chr13 118625993 118626219 -1118679 - L1M4 LINE L1 -2056 4090 3862 1808 139 67 26 chr13 118627794 118628140 -1116758 + MER46B DNA MER2_type 2 236 0 260 135 0 39 chr13 118628153 118628205 -1116693 - Tigger5 DNA MER2_type -2268 55 6 300 264 7 13 chr13 118628206 118628361 -1116537 + (TATATG)n Simple_repeat Simple_repeat 1 154 0 1915 152 37 0 chr13 118628473 118628795 -1116103 + MER7A DNA MER2_type 1 332 -14 255 283 85 19 chr13 118629113 118629219 -1115679 + MIR SINE MIR 60 172 -90 2627 50 0 0 chr13 118629372 118629671 -1115227 - AluY SINE Alu -12 299 1 24 67 0 0 chr13 118630397 118630442 -1114456 + AT_rich Low_complexity Low_complexity 1 45 0 267 178 68 14 chr13 118630823 118630896 -1114002 + L1MC/D LINE L1 3852 3928 -2218 2004 176 17 6 chr13 118631109 118631732 -1113166 + L1M1 LINE L1 4950 5581 -724 576 215 91 53 chr13 118631940 118632160 -1112738 + L1MC/D LINE L1 5442 5664 -506 967 79 16 0 chr13 118634590 118634717 -1110181 + BC200 scRNA scRNA 1 129 -71 325 298 60 13 chr13 118635099 118635250 -1109648 + L1 LINE L1 3013 3170 -2976 2106 107 18 0 chr13 118635821 118636122 -1108776 + AluSx SINE Alu 1 306 0 241 264 107 25 chr13 118636404 118636525 -1108373 + L1MC/D LINE L1 5769 5899 -1909 2465 89 0 0 chr13 118638223 118638526 -1106372 - AluSx SINE Alu -9 303 1 441 36 0 0 chr13 118639273 118639328 -1105570 + (CA)n Simple_repeat Simple_repeat 2 56 0 13160 114 35 30 chr13 118642666 118644797 -1100101 + Tigger1 DNA MER2_type 276 2416 -2 22 39 0 39 chr13 118645396 118645412 -1099486 + AT_rich Low_complexity Low_complexity 1 16 -33 2181 116 0 3 chr13 118645412 118645713 -1099185 - AluSq SINE Alu -13 300 1 22 39 0 39 chr13 118645713 118645747 -1099151 + AT_rich Low_complexity Low_complexity 16 49 0 234 241 76 0 chr13 118646032 118646111 -1098787 + L1 LINE L1 4733 4817 -1329 1665 227 131 39 chr13 118646825 118647578 -1097320 - L1ME1 LINE L1 -180 6266 5471 2216 115 7 0 chr13 118647732 118648036 -1096862 - AluSx SINE Alu -6 306 1 1212 201 50 0 chr13 118648188 118648467 -1096431 + MER33 DNA MER1_type 31 323 -1 476 93 13 0 chr13 118648470 118648545 -1096353 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 2100 97 7 0 chr13 118648555 118648824 -1096074 - AluSx SINE Alu -41 271 1 2392 183 134 11 chr13 118648842 118649410 -1095488 - L1MC3 LINE L1 -216 7569 6932 * 2700 243 83 30 chr13 118649405 118649803 -1095095 - L1ME1 LINE L1 -2693 3733 3358 2066 138 0 0 chr13 118649803 118650093 -1094805 - AluSx SINE Alu -22 290 1 2700 243 83 30 chr13 118650093 118650828 -1094070 - L1ME1 LINE L1 -3068 3358 2480 252 0 0 0 chr13 118650828 118650856 -1094042 + (TG)n Simple_repeat Simple_repeat 2 29 0 2700 243 83 30 chr13 118650856 118651003 -1093895 - L1ME1 LINE L1 -3946 2480 2342 824 250 65 49 chr13 118651084 118651408 -1093490 + L1MEc LINE L1 34 362 -6034 311 302 280 0 chr13 118651419 118651737 -1093161 - L2 LINE L2 -1046 2268 1862 1194 262 75 39 chr13 118652152 118652843 -1092055 - L1ME LINE L1 -347 6610 5945 5511 130 15 9 chr13 118652843 118654297 -1090601 - L1PA16 LINE L1 -4 6162 4714 1194 262 75 39 chr13 118654297 118654367 -1090531 - L1ME LINE L1 -1012 5945 5879 1220 146 82 14 chr13 118654367 118654587 -1090311 - MER46A DNA MER2_type 0 236 2 1194 262 75 39 chr13 118654587 118654720 -1090178 - L1ME LINE L1 -1078 5879 5690 713 238 66 100 chr13 118654837 118654962 -1089936 - L1ME LINE L1 -1442 5499 5371 2685 123 41 5 chr13 118654962 118655375 -1089523 + MSTA LTR MaLR 1 428 0 713 238 66 100 chr13 118655375 118655631 -1089267 - L1ME LINE L1 -1570 5371 5136 1788 170 10 3 chr13 118655631 118655919 -1088979 - AluJb SINE Alu -22 290 1 713 238 66 100 chr13 118655919 118656024 -1088874 - L1ME LINE L1 -1805 5136 5029 493 292 146 45 chr13 118656024 118656442 -1088456 - LTR16B LTR ERVL 0 464 5 258 189 38 0 chr13 118657325 118657378 -1087520 - Tigger5 DNA MER2_type -4 2319 2265 807 172 0 0 chr13 118657391 118657513 -1087385 + FLAM_C SINE Alu 4 125 -18 1107 291 50 18 chr13 118660547 118661148 -1083750 - L1ME LINE L1 -356 5808 5191 259 187 7 4 chr13 118661144 118661209 -1083689 - L1MC4 LINE L1 0 8039 7933 * 1061 323 78 3 chr13 118661213 118661829 -1083069 - L1MC4 LINE L1 -143 7899 7238 2198 113 0 0 chr13 118661833 118662138 -1082760 - AluSx SINE Alu 0 305 1 1212 193 56 36 chr13 118662138 118662443 -1082455 - L1MC4 LINE L1 -960 7082 6772 1206 297 85 36 chr13 118662444 118664325 -1080573 - L1MCc LINE L1 -3650 3291 1132 551 331 55 14 chr13 118664820 118665240 -1079658 - L1MCc LINE L1 -5969 454 18 2085 270 52 37 chr13 118665261 118666071 -1078827 + Charlie7 DNA MER1_type 1485 2306 -306 5212 157 21 8 chr13 118666072 118667850 -1077048 + L1PA15 LINE L1 4340 6138 -27 333 272 101 31 chr13 118667918 118668175 -1076723 + Charlie7 DNA MER1_type 2294 2568 -44 320 252 41 41 chr13 118668548 118668671 -1076227 - MER5A DNA MER1_type -34 155 33 534 204 45 19 chr13 118669188 118669345 -1075553 + Charlie5 DNA MER1_type 2399 2559 -53 348 268 63 0 chr13 118669762 118669889 -1075009 + MLT1J LTR MaLR 222 356 -155 267 350 80 7 chr13 118670119 118670256 -1074642 + L2 LINE L2 3116 3262 -10 357 261 76 17 chr13 118677091 118677210 -1067688 - LTR40b LTR ERVL 0 462 337 398 286 19 32 chr13 118677320 118677474 -1067424 - LTR40a LTR ERVL -364 155 4 505 239 146 61 chr13 118678700 118679111 -1065787 - MLT1E LTR MaLR -8 585 67 869 233 54 12 chr13 118682348 118682606 -1062292 + MLT2D LTR ERVL 2 270 -144 280 296 96 0 chr13 118683544 118683659 -1061239 - MER3 DNA MER1_type 0 209 84 457 275 67 10 chr13 118683720 118683807 -1061091 + MER58A DNA MER1_type 21 102 -2318 1850 99 15 37 chr13 118683807 118684080 -1060818 - AluSx SINE Alu -13 299 33 457 275 67 10 chr13 118684080 118684185 -1060713 + MER58A DNA MER1_type 102 224 0 2489 85 0 0 chr13 118685152 118685458 -1059440 + AluSx SINE Alu 1 306 -6 279 54 0 0 chr13 118686123 118686160 -1058738 + (TC)n Simple_repeat Simple_repeat 2 38 0 228 35 0 0 chr13 118686160 118686189 -1058709 + (CA)n Simple_repeat Simple_repeat 1 29 0 276 294 18 9 chr13 118687460 118687569 -1057329 + L1MCc LINE L1 1384 1493 -4930 63 0 0 0 chr13 118687623 118687686 -1057212 + AT_rich Low_complexity Low_complexity 1 63 0 593 270 115 31 chr13 118687712 118688363 -1056535 + L1MCc LINE L1 1792 2497 -4444 544 335 65 24 chr13 118688385 118688675 -1056223 + L1MCc LINE L1 2600 2901 -4221 434 284 75 7 chr13 118688676 118688954 -1055944 + L1MCc LINE L1 2724 3020 -4102 204 0 54 27 chr13 118688981 118689018 -1055880 + (TA)n Simple_repeat Simple_repeat 1 38 0 1226 249 75 8 chr13 118689025 118689495 -1055403 + L1MCc LINE L1 3075 3575 -3366 209 349 62 23 chr13 118690201 118690330 -1054568 + MIR SINE MIR 83 216 -46 458 312 81 11 chr13 118690452 118690638 -1054260 + MIR3 SINE MIR 4 202 -6 394 274 52 7 chr13 118691165 118691318 -1053580 + (TG)n Simple_repeat Simple_repeat 2 161 0 255 222 51 0 chr13 118691336 118691453 -1053445 + (TG)n Simple_repeat Simple_repeat 2 124 0 338 259 95 9 chr13 118692919 118693035 -1051863 + L2 LINE L2 3187 3312 -1 185 239 65 0 chr13 118694810 118694856 -1050042 + L2 LINE L2 3224 3272 0 273 257 50 10 chr13 118695689 118695790 -1049108 - MIR SINE MIR -85 123 19 2294 259 83 15 chr13 118695877 118696168 -1048730 + L1MEc LINE L1 46 316 -6080 315 0 0 0 chr13 118696168 118696203 -1048695 + (CA)n Simple_repeat Simple_repeat 2 36 0 2294 259 83 15 chr13 118696203 118696773 -1048125 + L1MEc LINE L1 316 966 -5430 * 5719 238 61 100 chr13 118696765 118696976 -1047922 + L1M4 LINE L1 2174 2392 -3754 1935 171 10 0 chr13 118696976 118697281 -1047617 - AluJo SINE Alu -4 308 1 5719 238 61 100 chr13 118697281 118697768 -1047130 + L1M4 LINE L1 2392 2896 -3250 2192 144 0 0 chr13 118697768 118698080 -1046818 - AluSx SINE Alu 0 312 1 5719 238 61 100 chr13 118698080 118699038 -1045860 + L1M4 LINE L1 2896 3890 -2256 546 297 64 0 chr13 118699038 118699240 -1045658 + MER58A DNA MER1_type 1 215 -9 5719 238 61 100 chr13 118699240 118700314 -1044584 + L1M4 LINE L1 3890 4993 -1153 297 108 27 14 chr13 118700686 118700760 -1044138 + CT-rich Low_complexity Low_complexity 2 76 0 216 304 246 7 chr13 118701410 118701548 -1043350 - L2 LINE L2 0 3272 3102 616 305 72 71 chr13 118702389 118703038 -1041860 - L1MEd LINE L1 -4604 1560 822 2363 229 25 22 chr13 118703038 118703139 -1041759 - L1MCc LINE L1 -3115 3826 3727 3295 128 24 2 chr13 118703139 118703641 -1041257 + MER75 DNA T2_type 2 514 0 2363 229 25 22 chr13 118703641 118704254 -1040644 - L1MCc LINE L1 -3214 3727 3110 3052 101 2 0 chr13 118704313 118704767 -1040131 - L1PA13 LINE L1 -65 6098 5644 2275 277 90 20 chr13 118704799 118707327 -1037571 - L1MCc LINE L1 -4121 3001 60 1160 143 6 0 chr13 118707335 118707503 -1037395 - AluSq SINE Alu -10 303 135 667 270 34 13 chr13 118707551 118707788 -1037110 - L1MEd LINE L1 -5287 832 591 683 286 64 18 chr13 118707902 118708244 -1036654 - L1MEd LINE L1 -5704 415 58 27 0 0 0 chr13 118708477 118708504 -1036394 + AT_rich Low_complexity Low_complexity 1 27 0 571 344 65 45 chr13 118708970 118709307 -1035591 + HAL1b LINE L1 8 351 -997 261 0 0 0 chr13 118709544 118709573 -1035325 + (CA)n Simple_repeat Simple_repeat 2 30 0 1954 136 0 0 chr13 118709791 118710056 -1034842 + AluSq SINE Alu 1 265 -48 284 0 0 27 chr13 118710068 118710105 -1034793 + (CAA)n Simple_repeat Simple_repeat 2 37 0 6687 240 49 42 chr13 118710115 118711666 -1033232 + L1M1 LINE L1 16 1554 -6011 2354 118 0 3 chr13 118711666 118711979 -1032919 + AluSx SINE Alu 1 312 0 6687 240 49 42 chr13 118711979 118712041 -1032857 + L1M1 LINE L1 1554 1614 -5951 192 77 0 0 chr13 118712041 118712067 -1032831 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6687 240 49 42 chr13 118712067 118712165 -1032733 + L1M1 LINE L1 1614 1710 -5855 2417 164 34 7 chr13 118712165 118712579 -1032319 + MSTB LTR MaLR 1 425 -1 6687 240 49 42 chr13 118712579 118713556 -1031342 + L1M1 LINE L1 1710 3411 -4154 5869 149 19 32 chr13 118713550 118715083 -1029815 + L1MA4 LINE L1 4782 6300 0 * 23 0 0 0 chr13 118715192 118715215 -1029683 + AT_rich Low_complexity Low_complexity 1 23 0 1799 166 14 0 chr13 118715441 118715736 -1029162 - L1M3 LINE L1 -401 5782 5484 895 158 12 12 chr13 118715744 118715909 -1028989 - L1MB3 LINE L1 -232 5951 5787 322 187 13 0 chr13 118715892 118715967 -1028931 + L1 LINE L1 5226 5301 -845 * 22842 44 2 0 chr13 118716004 118719552 -1025346 - L1PA5 LINE L1 -5 6149 2597 985 179 51 16 chr13 118719691 118719926 -1024972 - L1M3 LINE L1 -710 5470 5228 2190 150 13 8 chr13 118719926 118720305 -1024593 + L1MB3 LINE L1 5801 6181 -2 378 306 111 29 chr13 118720355 118721179 -1023719 + L1MD3 LINE L1 2272 3170 -2976 1837 58 9 0 chr13 118721179 118721402 -1023496 + AluY SINE Alu 84 308 -3 378 306 111 29 chr13 118721402 118721435 -1023463 + L1MD3 LINE L1 3170 3199 -2947 6721 129 11 2 chr13 118721445 118722950 -1021948 + L1PB1 LINE L1 4638 6151 0 1185 318 101 28 chr13 118722927 118724784 -1020114 + L1MD3 LINE L1 3168 5159 -987 * 199 93 47 0 chr13 118724843 118724886 -1020012 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 764 270 41 8 chr13 118724895 118725162 -1019736 + L1MD3 LINE L1 5258 5533 -2275 483 211 32 64 chr13 118725486 118725642 -1019256 + L1MD3 LINE L1 5587 5737 -2071 279 246 75 0 chr13 118725735 118725824 -1019074 + L1MD3 LINE L1 6634 6750 -1057 580 245 36 21 chr13 118725824 118726016 -1018882 + L1MC4a LINE L1 6913 7107 -701 1994 126 155 11 chr13 118726282 118726656 -1018242 + MSTA LTR MaLR 1 428 0 218 261 101 0 chr13 118727770 118727839 -1017059 + MIR SINE MIR 75 150 -58 292 307 61 12 chr13 118728825 118728988 -1015910 + MIR SINE MIR 63 233 -29 322 202 64 11 chr13 118729071 118729165 -1015733 - MER81 DNA DNA -15 99 1 209 282 71 0 chr13 118729790 118729875 -1015023 - L2 LINE L2 -14 3258 3168 2112 121 3 10 chr13 118730608 118730913 -1013985 + AluSx SINE Alu 1 303 -9 502 249 81 85 chr13 118730953 118731387 -1013511 + MER89 LTR ERV1 128 559 0 226 139 0 0 chr13 118732132 118732168 -1012730 + MIR SINE MIR 113 148 -60 641 273 99 8 chr13 118732206 118732378 -1012520 + MER33 DNA MER1_type 49 253 -2332 1918 111 0 0 chr13 118732378 118732631 -1012267 - AluSc SINE Alu -14 295 43 641 273 99 8 chr13 118732631 118732711 -1012187 + MER33 DNA MER1_type 253 324 0 184 305 35 21 chr13 118732719 118732860 -1012038 + MER5B DNA MER1_type 1 143 -35 281 155 0 84 chr13 118732989 118733060 -1011838 - MER5A DNA MER1_type -121 68 4 1246 180 24 36 chr13 118735366 118735512 -1009386 + MER72 LTR ERV1 242 385 -337 2155 129 135 5 chr13 118735512 118735891 -1009007 + MSTA LTR MaLR 1 428 0 1246 180 24 36 chr13 118735891 118735994 -1008904 + MER72 LTR ERV1 385 488 -234 2849 211 151 50 chr13 118735999 118737000 -1007898 + MER31B-int LTR ERV1 350 1451 -3485 332 269 91 34 chr13 118736888 118737063 -1007835 + LTR57-int LTR ERVL 1238 1422 -3921 * 5242 85 15 0 chr13 118737068 118737749 -1007149 + LTR8 LTR ERV1 1 691 0 30926 100 32 18 chr13 118737749 118743148 -1001750 + HUERS-P1 LTR ERV1 1 4641 -374 1073 87 5 27 chr13 118743148 118743332 -1001566 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 30926 100 32 18 chr13 118743332 118743364 -1001534 + HUERS-P1 LTR ERV1 4641 4671 -344 2195 131 0 3 chr13 118743386 118743700 -1001198 - AluSq SINE Alu 0 313 1 2281 98 10 0 chr13 118743700 118744007 -1000891 + HUERS-P1 LTR ERV1 5935 6244 -19 614 121 8 113 chr13 118744009 118744133 -1000765 + AluSc SINE Alu 2 112 -197 198 0 0 0 chr13 118744134 118744156 -1000742 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 268 57 0 0 chr13 118744161 118744196 -1000702 + HUERS-P1 LTR ERV1 6229 6263 0 5079 95 13 3 chr13 118744196 118744880 -1000018 + LTR8 LTR ERV1 1 691 0 1890 178 0 10 chr13 118744894 118745198 -999700 - AluJb SINE Alu -11 301 1 9504 203 90 73 chr13 118745211 118745979 -998919 + MER31B-int LTR ERV1 1702 2456 -2480 2111 125 34 0 chr13 118745979 118746274 -998624 - AluSq SINE Alu -8 305 1 9504 203 90 73 chr13 118746274 118748666 -996232 + MER31B-int LTR ERV1 2456 4915 -21 701 224 40 76 chr13 118748667 118748917 -995981 + MER31B LTR ERV1 1 241 -225 543 210 94 14 chr13 118749078 118749216 -995682 - MER31-int LTR ERV1 -1193 3743 3595 665 169 164 40 chr13 118749229 118749430 -995468 + MER31B LTR ERV1 232 457 -9 205 75 50 0 chr13 118749580 118749620 -995278 + (TG)n Simple_repeat Simple_repeat 2 43 0 2065 138 38 24 chr13 118750964 118751334 -993564 - THE1C LTR MaLR 0 375 1 227 259 0 0 chr13 118751700 118751758 -993140 + MER89 LTR ERV1 1 58 -501 354 177 38 0 chr13 118751858 118751937 -992961 - MER31B LTR ERV1 -384 82 1 288 224 97 22 chr13 118752003 118752137 -992761 - MLT1H LTR MaLR -154 395 252 2346 50 29 4 chr13 118752277 118752556 -992342 + AluY SINE Alu 1 286 -25 24 67 0 0 chr13 118753053 118753098 -991800 + AT_rich Low_complexity Low_complexity 1 45 0 1774 197 0 3 chr13 118753109 118753414 -991484 + AluJb SINE Alu 1 304 -8 1931 158 0 3 chr13 118753414 118753721 -991177 + AluSx SINE Alu 1 307 0 883 282 65 78 chr13 118753840 118754918 -989980 - HAL1b LINE L1 -9 1339 91 208 235 25 25 chr13 118755162 118755243 -989655 + T-rich Low_complexity Low_complexity 3 83 0 1027 155 31 0 chr13 118755793 118755954 -988944 - FRAM SINE Alu -15 161 1 444 255 37 19 chr13 118755964 118756125 -988773 - L1MD2 LINE L1 -1 8388 6601 236 216 27 0 chr13 118756172 118756320 -988578 + (TA)n Simple_repeat Simple_repeat 2 153 0 951 153 30 110 chr13 118756387 118756623 -988275 - Tigger5 DNA MER2_type 0 2323 2107 1020 261 96 4 chr13 118756623 118756903 -987995 - Tigger5 DNA MER2_type -2016 307 2 2133 256 106 13 chr13 118756915 118757660 -987238 - L1MD2 LINE L1 -210 6543 5730 921 214 38 5 chr13 118757664 118757874 -987024 - MLT1D LTR MaLR 0 505 289 427 221 71 9 chr13 118757956 118758025 -986873 + MLT2D LTR ERVL 1 81 -333 2184 107 10 0 chr13 118758025 118758315 -986583 + AluSq SINE Alu 1 293 -20 427 221 71 9 chr13 118758315 118758358 -986540 + MLT2D LTR ERVL 81 120 -294 907 286 32 9 chr13 118758361 118758703 -986195 - L1MD2 LINE L1 -1248 5292 4943 2484 252 96 18 chr13 118758703 118759976 -984922 - L1MD2 LINE L1 -2228 4312 32 208 309 37 0 chr13 118760081 118760162 -984736 + MIR SINE MIR 38 121 -141 311 192 384 0 chr13 118760205 118760304 -984594 - MLT1H LTR MaLR -13 536 400 1429 225 41 16 chr13 118760632 118760997 -983901 - MLT1A2 LTR MaLR 0 374 1 500 235 97 71 chr13 118761423 118761661 -983237 - LTR48B LTR ERV1 -19 625 382 815 243 141 11 chr13 118761674 118761937 -982961 - LTR48 LTR ERV1 -335 452 156 366 61 0 0 chr13 118763414 118763463 -981435 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 432 97 0 0 chr13 118763463 118763525 -981373 + (TTCCC)n Simple_repeat Simple_repeat 4 65 0 5195 190 24 11 chr13 118764272 118765605 -979293 + L1PA16 LINE L1 4123 5476 -690 3868 128 68 0 chr13 118765993 118766625 -978273 + L1PA16 LINE L1 5484 6158 -8 21 36 0 0 chr13 118766625 118766653 -978245 + AT_rich Low_complexity Low_complexity 1 28 0 370 189 31 19 chr13 118767511 118767670 -977228 + (CA)n Simple_repeat Simple_repeat 2 162 0 479 186 12 29 chr13 118767688 118767860 -977038 + (CA)n Simple_repeat Simple_repeat 2 170 0 298 218 11 34 chr13 118767875 118768054 -976844 + (CA)n Simple_repeat Simple_repeat 2 176 0 487 197 31 31 chr13 118768076 118768433 -976465 + (CA)n Simple_repeat Simple_repeat 1 357 0 1477 206 41 6 chr13 118770834 118771179 -973719 + MLT1A2 LTR MaLR 16 372 -2 364 314 63 24 chr13 118773260 118773512 -971386 - MER20B DNA MER1_type -2 781 520 835 263 35 45 chr13 118773645 118773957 -970941 - MER20B DNA MER1_type -274 509 201 271 328 101 0 chr13 118774344 118774463 -970435 + MIR SINE MIR 128 258 -4 223 130 37 0 chr13 118774679 118774733 -970165 + GA-rich Low_complexity Low_complexity 2 57 0 191 222 175 0 chr13 118775614 118775677 -969221 - MIR3 SINE MIR -10 198 125 296 308 28 9 chr13 118777341 118777448 -967450 - MER5A DNA MER1_type -77 112 4 229 223 96 32 chr13 118777722 118777816 -967082 - Charlie8 DNA MER1_type -2213 204 105 914 199 11 5 chr13 118781187 118781378 -963520 + L1MB2 LINE L1 5980 6171 0 500 281 99 26 chr13 118783670 118784022 -960876 - MLT1C LTR MaLR -46 421 44 197 328 92 8 chr13 118784045 118784164 -960734 - MIR SINE MIR -74 188 60 1050 140 0 0 chr13 118784700 118784879 -960019 + (GA)n Simple_repeat Simple_repeat 1 179 0 507 177 0 0 chr13 118784996 118785092 -959806 + GA-rich Low_complexity Low_complexity 2 97 0 1119 170 17 30 chr13 118785100 118785259 -959639 + Tigger7 DNA MER2_type 2254 2411 -80 15380 129 16 21 chr13 118785259 118787690 -957208 - Tigger1 DNA MER2_type 0 2418 1 1119 170 17 30 chr13 118787690 118787765 -957133 + Tigger7 DNA MER2_type 2411 2485 -6 22 0 0 0 chr13 118788151 118788173 -956725 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr13 118788175 118788195 -956703 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 4000 232 94 41 chr13 118788195 118788371 -956527 - L1MDa LINE L1 -4237 2303 2138 2234 136 0 0 chr13 118788371 118788716 -956182 + AluSq SINE Alu 1 313 0 4000 232 94 41 chr13 118788716 118789712 -955186 - L1MDa LINE L1 -4402 2138 1197 4353 83 14 2 chr13 118789712 118790289 -954609 - L1PA10 LINE L1 -4 6164 5581 4000 232 94 41 chr13 118790289 118790924 -953974 - L1MDa LINE L1 -5343 1197 3 891 209 175 12 chr13 118791350 118791681 -953217 - Charlie1 DNA MER1_type -153 2608 2224 * 5007 169 46 17 chr13 118791674 118791754 -953144 - Tigger3b DNA MER2_type -1798 1230 1154 1515 91 101 0 chr13 118791754 118791963 -952935 - MER30 DNA MER1_type 0 230 1 5007 169 46 17 chr13 118791963 118792885 -952013 - Tigger3b DNA MER2_type -1874 1154 199 864 229 21 0 chr13 118792880 118793068 -951830 + Tigger3(Golem) DNA MER2_type 96 287 -2742 * 213 39 0 0 chr13 118795093 118795119 -949779 + (A)n Simple_repeat Simple_repeat 1 26 0 227 164 82 0 chr13 118796154 118796215 -948683 + (GGGTG)n Simple_repeat Simple_repeat 3 68 0 2288 120 0 0 chr13 118796478 118796787 -948111 + AluSx SINE Alu 1 309 -3 1829 125 94 31 chr13 118797675 118798027 -946871 + THE1C LTR MaLR 2 375 0 1903 283 56 31 chr13 118798029 118798937 -945961 - L1MC4a LINE L1 -7 7801 6871 1724 124 143 0 chr13 118798988 118799254 -945644 - AluSq SINE Alu -6 307 4 361 285 54 0 chr13 118799452 118799582 -945316 - MER6 DNA MER2_type -725 140 4 206 224 15 45 chr13 118800803 118800870 -944028 + GA-rich Low_complexity Low_complexity 3 67 0 988 219 50 45 chr13 118802188 118802590 -942308 - MLT1C LTR MaLR -16 374 1 335 330 0 27 chr13 118802648 118802760 -942138 + MIR3 SINE MIR 72 180 -28 246 62 0 0 chr13 118803067 118803099 -941799 + (TG)n Simple_repeat Simple_repeat 1 32 0 3206 107 18 0 chr13 118803136 118803594 -941304 - L1PA11 LINE L1 0 6174 5709 400 172 0 20 chr13 118805505 118805604 -939294 + CT-rich Low_complexity Low_complexity 5 101 0 951 152 0 0 chr13 118805609 118805747 -939151 - AluSg/x SINE Alu -38 274 137 218 264 0 0 chr13 118805911 118805964 -938934 + (TG)n Simple_repeat Simple_repeat 2 54 0 342 255 20 0 chr13 118805986 118806139 -938759 + (TG)n Simple_repeat Simple_repeat 1 156 0 251 152 0 0 chr13 118806139 118806185 -938713 + MER4-int LTR ERV1 1112 1157 -5441 190 265 0 108 chr13 118811623 118811706 -933192 + L2 LINE L2 359 432 -2882 253 208 0 0 chr13 118850637 118850685 -894213 - Ricksha DNA DNA -2338 908 861 181 83 56 0 chr13 118850733 118850769 -894129 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 1314 216 50 82 chr13 118850838 118851316 -893582 - MLT2B1 LTR ERVL -56 464 2 1783 164 51 13 chr13 118851318 118851708 -893190 - ERVL-B1 LTR ERVL -11 5753 5349 387 234 180 0 chr13 118852088 118852216 -892682 - MIR SINE MIR -70 192 42 669 104 269 22 chr13 118852574 118852708 -892190 - AluSg/x SINE Alu -20 289 123 24 53 0 0 chr13 118852815 118852853 -892045 + AT_rich Low_complexity Low_complexity 1 38 0 225 158 256 0 chr13 118853109 118853191 -891707 + MIR SINE MIR 86 188 -74 216 0 0 0 chr13 118854685 118854709 -890189 + (TA)n Simple_repeat Simple_repeat 2 25 0 326 350 50 0 chr13 118854733 118854853 -890045 - L1MEd LINE L1 -5449 670 545 2932 254 63 21 chr13 118854938 118854973 -889925 + L1MEc LINE L1 2179 2211 -4004 1535 173 114 7 chr13 118854973 118855279 -889619 - MER44D DNA MER2_type 0 609 1 2932 254 63 21 chr13 118855279 118855795 -889103 + L1MEc LINE L1 2211 2704 -3511 2346 117 0 0 chr13 118855795 118856104 -888794 + AluSq SINE Alu 1 309 -4 2932 254 63 21 chr13 118856104 118856946 -887952 + L1MEc LINE L1 2704 3579 -2636 1656 242 53 88 chr13 118856990 118858844 -886054 + L1MDb LINE L1 1027 2860 -3546 * 10623 108 4 6 chr13 118858842 118860496 -884402 - L1P LINE L1 -866 5280 3631 5108 255 77 51 chr13 118860495 118862846 -882052 + L1MDb LINE L1 2856 5266 -1140 * 227 150 0 150 chr13 118862839 118862899 -881999 + MLT1F-int LTR MaLR 1452 1502 -233 * 327 260 0 0 chr13 118863167 118863240 -881658 + MLT1F LTR MaLR 115 187 -380 653 222 88 12 chr13 118863315 118863486 -881412 + MLT1F LTR MaLR 335 518 -24 417 309 64 8 chr13 118865587 118865823 -879075 + LTR16A LTR ERVL 198 446 -4 227 300 218 0 chr13 118866250 118866360 -878538 + MIR SINE MIR 119 252 -10 280 319 50 6 chr13 118867439 118867599 -877299 + L1MEc LINE L1 3885 4051 -2164 357 287 169 59 chr13 118867711 118867948 -876950 + L1MEc LINE L1 4154 4416 -1799 381 196 93 28 chr13 118867971 118868078 -876820 + L1MEc LINE L1 22 135 -6261 2285 128 0 0 chr13 118868079 118868383 -876515 + AluSx SINE Alu 1 304 -8 439 381 105 5 chr13 118868404 118868809 -876089 - HAL1b LINE L1 -571 1763 518 526 348 52 54 chr13 118870954 118871398 -873500 + L2 LINE L2 2245 2689 -625 2377 86 0 44 chr13 118871398 118871713 -873185 - AluSq SINE Alu -12 301 1 526 348 52 54 chr13 118871713 118871802 -873096 + L2 LINE L2 2689 2777 -537 24 32 0 0 chr13 118873802 118873833 -871065 + AT_rich Low_complexity Low_complexity 1 31 0 310 346 0 25 chr13 118875464 118875623 -869275 + (TG)n Simple_repeat Simple_repeat 1 155 0 204 322 0 23 chr13 118875693 118875780 -869118 + MIR3 SINE MIR 113 197 -11 424 284 41 35 chr13 118876427 118876596 -868302 - MIR SINE MIR -32 230 61 203 273 0 0 chr13 118877584 118877628 -867270 + GA-rich Low_complexity Low_complexity 4 47 0 830 263 90 42 chr13 118878896 118879253 -865645 + MLT2C1 LTR ERVL 23 396 -1 1136 246 159 8 chr13 118883074 118883427 -861471 - MER119 DNA MER1_type -44 539 134 435 208 281 5 chr13 118883571 118883792 -861106 + MER5C DNA MER1_type 43 324 0 517 204 29 6 chr13 118884131 118884303 -860595 + CT-rich Low_complexity Low_complexity 4 179 0 425 167 0 0 chr13 118886240 118886312 -858586 + MSTA LTR MaLR 5 76 -352 6338 168 142 55 chr13 118886318 118887877 -857021 - pTR5 LTR ERV1 0 2438 743 703 101 73 0 chr13 118887877 118887986 -856912 - MER51B LTR ERV1 -260 117 1 * 1820 142 68 6 chr13 118887986 118888317 -856581 + MSTA LTR MaLR 77 428 0 309 245 78 29 chr13 118888460 118888562 -856336 - MIR3 SINE MIR -10 198 92 778 334 41 32 chr13 118888818 118889479 -855419 + L1ME LINE L1 3745 4411 -1735 242 313 50 0 chr13 118889490 118889589 -855309 + MLT1I LTR MaLR 5 108 -301 359 286 97 13 chr13 118889661 118889815 -855083 + MLT1I LTR MaLR 237 403 -6 1050 257 27 68 chr13 118890030 118890517 -854381 - MLT1C LTR MaLR 0 467 1 2136 167 71 0 chr13 118891213 118891609 -853289 - MSTB LTR MaLR -2 424 1 276 266 13 0 chr13 118892091 118892170 -852728 + MLT1I LTR MaLR 93 172 -237 342 289 139 16 chr13 118892340 118892527 -852371 + L1ME LINE L1 4400 4609 -1537 523 304 99 8 chr13 118892635 118893000 -851898 - MLT2E LTR ERVL -1 627 230 857 279 59 23 chr13 118893435 118894027 -850871 + L1ME LINE L1 5084 5703 -459 499 401 98 13 chr13 118894606 118895220 -849678 - L3 LINE CR1 -212 1365 700 529 207 256 10 chr13 118897043 118897246 -847652 + Ricksha DNA DNA 69 321 -933 * 6878 165 62 15 chr13 118897236 118897461 -847437 + Ricksha DNA DNA 1820 2033 -1213 2621 61 0 3 chr13 118897461 118897773 -847125 + AluY SINE Alu 1 311 0 6878 165 62 15 chr13 118897773 118898364 -846534 + Ricksha DNA DNA 2033 2595 -651 267 54 0 0 chr13 118898364 118898401 -846497 + (TG)n Simple_repeat Simple_repeat 2 38 0 6878 165 62 15 chr13 118898401 118898947 -845951 + Ricksha DNA DNA 2595 3246 0 426 345 7 0 chr13 118900510 118900649 -844249 - MIR SINE MIR -6 256 117 1466 169 3 58 chr13 118901076 118901371 -843527 + AluJb SINE Alu 1 279 -33 218 54 0 27 chr13 118901379 118901416 -843482 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 306 236 24 0 chr13 118901441 118901564 -843334 + (CA)n Simple_repeat Simple_repeat 1 126 0 428 235 0 8 chr13 118901645 118901777 -843121 + (CA)n Simple_repeat Simple_repeat 1 131 0 2273 118 0 0 chr13 118902146 118902451 -842447 + AluSx SINE Alu 7 311 -1 944 235 29 33 chr13 118902731 118903037 -841861 - MER69 DNA AcHobo -314 2212 1908 3801 139 102 28 chr13 118903473 118904238 -840660 - LTR12 LTR ERV1 0 826 5 2920 159 18 28 chr13 118904253 118904864 -840034 - pTR5 LTR ERV1 -1093 1345 741 788 144 17 17 chr13 118907432 118907606 -837292 + CT-rich Low_complexity Low_complexity 2 175 0 359 310 3 16 chr13 118908620 118908929 -835969 + (CA)n Simple_repeat Simple_repeat 1 304 0 246 215 0 63 chr13 118910914 118910993 -833905 + C-rich Low_complexity Low_complexity 3 76 0 246 247 13 6 chr13 118911008 118911166 -833732 + CT-rich Low_complexity Low_complexity 3 161 0 192 202 16 49 chr13 118911224 118911407 -833491 + CT-rich Low_complexity Low_complexity 1 177 0 442 302 6 22 chr13 118911428 118911610 -833288 + CT-rich Low_complexity Low_complexity 2 180 0 188 191 0 74 chr13 118911614 118911776 -833122 + C-rich Low_complexity Low_complexity 3 152 0 696 173 15 0 chr13 118913580 118913713 -831185 - L1MA5A LINE L1 -410 5887 5753 1380 124 4 0 chr13 118913713 118913932 -830966 + L1MA6 LINE L1 6074 6300 0 283 268 254 0 chr13 118914287 118914425 -830473 + L1MC4a LINE L1 5424 5596 -2212 235 177 0 127 chr13 118915105 118915184 -829714 + L1MC4a LINE L1 6294 6362 -1446 515 245 47 47 chr13 118915279 118915512 -829386 + L1MC5 LINE L1 7710 7942 -19 841 186 83 0 chr13 118915875 118916068 -828830 + MER31A LTR ERV1 11 219 -266 278 256 92 0 chr13 118916091 118916255 -828643 + (CCCG)n Simple_repeat Simple_repeat 2 180 0 * 443 102 41 137 chr13 118916222 118916419 -828479 + (CCTG)n Simple_repeat Simple_repeat 3 180 0 271 236 87 19 chr13 118916432 118916593 -828305 + (CCCG)n Simple_repeat Simple_repeat 4 175 0 853 232 116 5 chr13 118916923 118917147 -827751 + MER66A LTR ERV1 2 250 -228 370 257 101 14 chr13 118917351 118917499 -827399 - MLT1C LTR MaLR -15 452 292 820 222 79 0 chr13 118917610 118917826 -827072 - MLT1C LTR MaLR -159 308 76 874 257 14 9 chr13 118917831 118918124 -826774 - MER2 DNA MER2_type -7 338 1 269 231 31 0 chr13 118918127 118918192 -826706 - MLT1C LTR MaLR -316 74 8 27 0 0 0 chr13 118919268 118919295 -825603 + AT_rich Low_complexity Low_complexity 1 27 0 414 338 7 7 chr13 118922300 118922448 -822450 + (TG)n Simple_repeat Simple_repeat 2 149 0 180 254 0 0 chr13 118922478 118922537 -822361 + (TG)n Simple_repeat Simple_repeat 2 60 0 241 237 40 26 chr13 118922537 118922613 -822285 + (TATG)n Simple_repeat Simple_repeat 4 80 0 253 192 0 0 chr13 118922613 118922665 -822233 + MER4-int LTR ERV1 1111 1162 -5436 260 217 111 6 chr13 118925166 118925260 -819638 - MIR SINE MIR -62 146 41 202 260 146 0 chr13 118926473 118926569 -818329 - MIR3 SINE MIR -2 206 97 1255 257 19 50 chr13 118927643 118928020 -816878 + MLT1A1 LTR MaLR 1 365 0 243 88 0 0 chr13 118928554 118928588 -816310 + (CTGGGG)n Simple_repeat Simple_repeat 1 34 0 252 0 0 0 chr13 118928741 118928769 -816129 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 331 152 25 0 chr13 118930021 118930100 -814798 + GA-rich Low_complexity Low_complexity 4 84 0 711 180 6 12 chr13 118930128 118930295 -814603 + GA-rich Low_complexity Low_complexity 3 168 0 197 224 17 0 chr13 118930312 118930370 -814528 + GA-rich Low_complexity Low_complexity 4 62 0 791 175 6 20 chr13 118930389 118930718 -814180 + GA-rich Low_complexity Low_complexity 1 324 0 231 114 0 0 chr13 118930723 118930758 -814140 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 215 259 0 19 chr13 118932328 118932382 -812516 + MIR3 SINE MIR 113 165 -43 1064 271 106 47 chr13 118932785 118933550 -811348 + L1ME LINE L1 426 1235 -4884 467 275 12 0 chr13 118933565 118933725 -811173 + L1ME LINE L1 4598 4759 -1370 1723 261 47 22 chr13 118934027 118934900 -809998 + L1ME LINE L1 4799 5689 -456 2402 131 9 2 chr13 118934961 118935394 -809504 - MER75 DNA T2_type 0 514 1 361 347 34 7 chr13 118935394 118935541 -809357 + L1ME LINE L1 5440 5590 -574 1339 216 89 50 chr13 118935549 118935989 -808909 + MLT1C LTR MaLR 6 462 -5 2140 101 128 11 chr13 118936124 118936492 -808406 - MSTA LTR MaLR -17 411 1 566 327 51 56 chr13 118936847 118937260 -807638 - MLT1L LTR MaLR -199 416 6 4140 172 39 5 chr13 118937612 118938358 -806540 + ERVL-C1 LTR ERVL 4278 5048 -716 471 295 83 5 chr13 118938378 118938571 -806327 + ERVL-C1 LTR ERVL 5550 5757 -7 282 281 108 61 chr13 118938623 118938854 -806044 + MLT2C1 LTR ERVL 72 313 -84 909 205 15 15 chr13 118939595 118939790 -805108 - MLT1A1 LTR MaLR 0 365 171 797 200 23 11 chr13 118940205 118940380 -804518 - MLT1A1 LTR MaLR -188 177 1 663 255 139 69 chr13 118940541 118940845 -804053 - MLT1G LTR MaLR -52 507 147 229 262 214 29 chr13 118940990 118941093 -803805 - MLT1G LTR MaLR -473 122 1 192 228 63 51 chr13 118941096 118941175 -803723 - MIR SINE MIR -126 136 57 565 272 113 0 chr13 118941417 118941612 -803286 + MIR SINE MIR 23 239 -23 254 93 0 23 chr13 118942218 118942261 -802637 + (TTCTCC)n Simple_repeat Simple_repeat 4 45 0 1530 216 64 0 chr13 118942492 118942834 -802064 + MLT1B LTR MaLR 9 372 -18 21 0 0 0 chr13 118946558 118946579 -798319 + AT_rich Low_complexity Low_complexity 1 21 0 333 299 15 36 chr13 118947227 118947364 -797534 - L2 LINE L2 -2 3270 3137 693 231 25 12 chr13 118947935 118948095 -796803 + MIR SINE MIR 63 224 -38 508 285 104 23 chr13 118950762 118951022 -793876 - MLT1C LTR MaLR 0 467 187 958 187 82 5 chr13 118951104 118951323 -793575 - MLT1C LTR MaLR -231 236 1 1620 211 77 16 chr13 118953888 118954328 -790570 + MLT1C LTR MaLR 1 467 0 255 306 37 30 chr13 118954765 118954899 -789999 + L2 LINE L2 2938 3072 -200 215 120 0 20 chr13 118955121 118955171 -789727 + (GCCTG)n Simple_repeat Simple_repeat 1 49 0 261 383 0 0 chr13 118957846 118957966 -786932 + MIR SINE MIR 47 166 -96 230 200 0 36 chr13 118958383 118958438 -786460 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 342 262 159 0 chr13 118959107 118959233 -785665 - MIR SINE MIR 0 262 117 227 235 0 20 chr13 118960750 118960801 -784097 + (TG)n Simple_repeat Simple_repeat 1 50 0 182 294 127 56 chr13 118963915 118964041 -780857 - MIR SINE MIR -106 156 22 1526 226 42 59 chr13 118964074 118964529 -780369 + LTR8A LTR ERV1 34 480 -247 648 223 146 56 chr13 118965308 118965541 -779357 + LTR8A LTR ERV1 474 727 0 350 145 16 0 chr13 118967163 118967225 -777673 + GA-rich Low_complexity Low_complexity 3 65 0 1515 222 42 59 chr13 118967858 118968313 -776585 + LTR8A LTR ERV1 34 480 -247 671 217 148 57 chr13 118969474 118969704 -775194 + LTR8A LTR ERV1 477 727 0 207 0 0 0 chr13 118970687 118970710 -774188 + (A)n Simple_repeat Simple_repeat 1 23 0 754 310 73 44 chr13 118974963 118975479 -769419 + L1MEc LINE L1 2077 2570 -3645 606 317 90 26 chr13 118976378 118976835 -768063 + MLT1K LTR MaLR 92 577 -11 310 282 19 19 chr13 118978380 118978483 -766415 - MER5B DNA MER1_type -71 107 5 368 340 44 6 chr13 118979052 118979211 -765687 - MIR SINE MIR -69 193 29 984 210 0 0 chr13 118979932 118980108 -764790 + AluJb SINE Alu 122 297 -15 215 273 23 34 chr13 118981631 118981719 -763179 + MIR SINE MIR 92 178 -84 317 191 0 48 chr13 118981754 118981942 -762956 + (TG)n Simple_repeat Simple_repeat 1 179 0 457 216 5 38 chr13 118981958 118982143 -762755 + (TG)n Simple_repeat Simple_repeat 1 179 0 209 224 0 17 chr13 118982157 118982215 -762683 + (TG)n Simple_repeat Simple_repeat 1 57 0 563 160 7 33 chr13 118982227 118982377 -762521 + (TG)n Simple_repeat Simple_repeat 2 147 0 1291 213 18 41 chr13 118983038 118983376 -761522 - MLT1A2 LTR MaLR 0 374 45 263 172 78 0 chr13 118986098 118986162 -758736 - MLT1A2 LTR MaLR -305 69 1 196 356 55 0 chr13 118988146 118988219 -756679 - MIR SINE MIR -6 256 180 223 240 0 21 chr13 118990853 118990949 -753949 + (TGGG)n Simple_repeat Simple_repeat 1 94 0 229 248 0 29 chr13 118990977 118991114 -753784 + (TGGG)n Simple_repeat Simple_repeat 1 133 0 396 169 0 0 chr13 118991786 118991863 -753035 + (TG)n Simple_repeat Simple_repeat 2 78 0 2265 251 97 72 chr13 118991867 118993080 -751818 + L1MC5 LINE L1 6686 7929 -32 203 250 0 0 chr13 118994384 118994432 -750466 + MIR SINE MIR 94 141 -67 1914 141 3 7 chr13 118994978 118995275 -749623 - AluSx SINE Alu -16 296 1 306 335 154 31 chr13 118995684 118996099 -748799 - L3 LINE CR1 -10 1567 1102 348 83 0 0 chr13 118996154 118996202 -748696 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 704 184 7 0 chr13 118996313 118996460 -748438 + GA-rich Low_complexity Low_complexity 4 151 0 248 238 16 16 chr13 118996471 118996534 -748364 + GA-rich Low_complexity Low_complexity 1 63 0 688 271 63 32 chr13 118997544 118997665 -747233 - MER5C DNA MER1_type -18 306 190 2280 105 3 0 chr13 118997665 118997960 -746938 + AluSq SINE Alu 2 297 -16 688 271 63 32 chr13 118997960 118998122 -746776 - MER5C DNA MER1_type -134 190 14 262 327 74 12 chr13 119001600 119001762 -743136 - L2 LINE L2 -510 2804 2633 869 177 43 0 chr13 119002628 119002814 -742084 - L1MA4A LINE L1 -1 6302 6109 3341 217 26 11 chr13 119003008 119003514 -741384 - L1MA7 LINE L1 -1 6290 5768 2236 116 0 0 chr13 119003514 119003816 -741082 - AluY SINE Alu -9 302 1 3341 217 26 11 chr13 119003816 119004046 -740852 - L1MA7 LINE L1 -523 5768 5543 314 240 33 25 chr13 119004214 119004335 -740563 + GA-rich Low_complexity Low_complexity 1 122 0 255 116 0 0 chr13 119005316 119005359 -739539 - MER4-int LTR ERV1 -5442 1156 1114 265 259 0 0 chr13 119005361 119005419 -739479 + (CA)n Simple_repeat Simple_repeat 1 58 0 901 285 118 28 chr13 119005567 119006033 -738865 + L1MC4a LINE L1 6339 6846 -962 1384 205 48 8 chr13 119006258 119006609 -738289 - MLT1A1 LTR MaLR 0 365 1 2055 153 10 0 chr13 119006887 119007194 -737704 - AluSq SINE Alu -3 310 1 275 183 17 17 chr13 119007322 119007382 -737516 + L1MC/D LINE L1 329 388 -5682 6884 252 45 44 chr13 119007836 119010502 -734396 + L1MC/D LINE L1 2629 5292 -883 2512 60 0 3 chr13 119010502 119010803 -734095 - AluY SINE Alu -11 300 1 6884 252 45 44 chr13 119010803 119010904 -733994 + L1MC/D LINE L1 5292 5402 -773 2071 100 0 94 chr13 119010904 119011233 -733665 - AluSx SINE Alu -14 298 1 6884 252 45 44 chr13 119011233 119011245 -733653 + L1MC/D LINE L1 5402 5412 -763 2629 67 3 0 chr13 119011440 119011752 -733146 + AluSp SINE Alu 1 313 0 23 0 0 0 chr13 119012504 119012527 -732371 + AT_rich Low_complexity Low_complexity 1 23 0 528 274 0 6 chr13 119012783 119013091 -731807 + CT-rich Low_complexity Low_complexity 1 306 0 219 293 61 0 chr13 119013101 119013183 -731715 - L2 LINE L2 -30 3283 3197 630 311 47 3 chr13 119015744 119016065 -728833 - MLT1C LTR MaLR -7 460 126 291 313 0 0 chr13 119016161 119016241 -728657 + CT-rich Low_complexity Low_complexity 4 83 0 302 175 32 0 chr13 119016376 119016439 -728459 - MLT1C LTR MaLR -320 70 6 200 308 119 21 chr13 119017953 119018239 -726659 + L2 LINE L2 1098 1411 -1903 * 364 308 191 23 chr13 119018223 119018658 -726240 - L2 LINE L2 -2 3311 2804 356 343 145 44 chr13 119019375 119019713 -725185 + L2 LINE L2 2897 3268 -4 203 184 97 48 chr13 119020206 119020309 -724589 + (GGGTG)n Simple_repeat Simple_repeat 5 112 0 905 273 28 25 chr13 119023520 119023839 -721059 - MER33 DNA MER1_type -3 321 2 222 37 0 0 chr13 119024183 119024210 -720688 + (TG)n Simple_repeat Simple_repeat 1 27 0 218 260 13 26 chr13 119025406 119025483 -719415 - L2 LINE L2 -3 3310 3235 23 78 0 0 chr13 119028695 119028746 -716152 + GC_rich Low_complexity Low_complexity 1 51 0 197 81 0 27 chr13 119030053 119030090 -714808 + (CCCCCG)n Simple_repeat Simple_repeat 2 37 0 225 243 81 90 chr13 119030870 119030981 -713917 + L2 LINE L2 3201 3310 -3 180 306 20 0 chr13 119031634 119031683 -713215 - MIR SINE MIR -77 131 82 2441 62 7 20 chr13 119032915 119033219 -711679 + AluY SINE Alu 1 300 -11 189 0 0 0 chr13 119033528 119033549 -711349 + (T)n Simple_repeat Simple_repeat 1 21 0 606 230 23 17 chr13 119033894 119034068 -710830 - MER104 DNA MER2_type -3 177 3 24 67 0 0 chr13 119034751 119034796 -710102 + AT_rich Low_complexity Low_complexity 1 45 0 210 232 116 0 chr13 119037626 119037695 -707203 - MIR SINE MIR -171 91 15 234 260 106 49 chr13 119037835 119037876 -707022 - MIR SINE MIR -24 238 201 2302 114 0 3 chr13 119037876 119038183 -706715 + AluSg SINE Alu 1 306 -4 234 260 106 49 chr13 119038183 119038264 -706634 - MIR SINE MIR -61 201 109 251 262 9 0 chr13 119038877 119038984 -705914 + GA-rich Low_complexity Low_complexity 2 109 0 406 306 106 13 chr13 119039133 119039368 -705530 - MIR SINE MIR -5 257 1 489 169 0 0 chr13 119039682 119039765 -705133 - Charlie4 DNA MER1_type -24 1937 1855 726 249 13 13 chr13 119039765 119039994 -704904 + L1MC5 LINE L1 6994 7222 -739 388 242 77 50 chr13 119040034 119040216 -704682 + L1MC5 LINE L1 7306 7492 -469 1128 231 85 32 chr13 119040232 119040574 -704324 - MER119 DNA MER1_type -209 374 15 814 306 98 26 chr13 119040910 119041904 -702994 + L1MEc LINE L1 37 932 -5185 409 212 12 0 chr13 119042132 119042174 -702724 + MER3 DNA MER1_type 5 47 -162 431 183 154 0 chr13 119042174 119042278 -702620 - MER3 DNA MER1_type 0 209 90 2146 131 0 19 chr13 119042319 119042632 -702266 - AluSx SINE Alu -5 307 1 370 253 29 118 chr13 119042807 119042977 -701921 - MER5A DNA MER1_type 0 189 35 600 102 0 0 chr13 119043117 119043215 -701683 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 2103 118 7 0 chr13 119043215 119043511 -701387 - AluSq SINE Alu -15 298 1 326 284 171 83 chr13 119046123 119046450 -698448 + HAL1 LINE L1 1 356 -2151 1148 254 79 30 chr13 119046816 119047484 -697414 + HAL1 LINE L1 788 1422 -3694 2722 11 0 0 chr13 119047484 119047770 -697128 - AluYa5 SINE Alu -13 298 13 1148 254 79 30 chr13 119047770 119047881 -697017 + HAL1 LINE L1 1422 4137 -979 3491 96 16 18 chr13 119047904 119048414 -696484 + MER1A DNA MER1_type 21 529 0 467 143 33 0 chr13 119048414 119048505 -696393 + L1ME1 LINE L1 4130 4223 -1923 2572 203 28 9 chr13 119048515 119049155 -695743 + L1ME1 LINE L1 4392 5043 -1103 365 291 17 0 chr13 119049158 119049275 -695623 + MER3 DNA MER1_type 7 125 -84 1152 256 40 25 chr13 119049282 119049677 -695221 + L1ME1 LINE L1 5760 6160 -6 273 209 0 15 chr13 119049732 119049799 -695099 + HAL1 LINE L1 1553 1618 -889 826 274 66 66 chr13 119049910 119050544 -694354 + HAL1 LINE L1 1853 2486 -21 371 299 108 12 chr13 119050562 119050729 -694169 + MIR SINE MIR 34 216 -46 1879 194 71 11 chr13 119051168 119051607 -693291 + MLT1C LTR MaLR 3 467 0 863 144 8 0 chr13 119052286 119052456 -692442 + FLAM_C SINE Alu 1 171 0 914 176 39 0 chr13 119052480 119052633 -692265 + AluJb SINE Alu 130 288 -24 21 36 0 0 chr13 119052717 119052745 -692153 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 119053315 119053336 -691562 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 119053432 119053462 -691436 + AT_rich Low_complexity Low_complexity 1 30 0 1158 255 48 24 chr13 119053652 119054071 -690827 - MER119 DNA MER1_type -23 560 132 735 118 26 51 chr13 119054743 119055046 -689852 + (CACAA)n Simple_repeat Simple_repeat 1 295 0 240 131 81 20 chr13 119055057 119055156 -689742 + (CACAA)n Simple_repeat Simple_repeat 5 109 0 288 323 16 31 chr13 119055411 119055538 -689360 - L2 LINE L2 -8 3264 3140 23 0 0 0 chr13 119055903 119055926 -688972 + AT_rich Low_complexity Low_complexity 1 23 0 32 67 0 0 chr13 119056121 119056181 -688717 + AT_rich Low_complexity Low_complexity 1 60 0 216 350 49 38 chr13 119057072 119057255 -687643 + MER5A DNA MER1_type 5 189 0 264 307 113 78 chr13 119057454 119057685 -687213 + L2 LINE L2 3009 3247 -25 263 260 153 4 chr13 119057927 119058070 -686828 - MIR SINE MIR -20 242 70 219 188 12 38 chr13 119060777 119060857 -684041 + GA-rich Low_complexity Low_complexity 2 79 0 227 100 0 25 chr13 119061586 119061626 -683272 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr13 119063136 119063162 -681736 + AT_rich Low_complexity Low_complexity 1 26 0 33 25 0 0 chr13 119064599 119064639 -680259 + GC_rich Low_complexity Low_complexity 1 40 0 22 80 0 0 chr13 119064766 119064816 -680082 + GC_rich Low_complexity Low_complexity 1 50 0 228 86 0 0 chr13 119064941 119064976 -679922 + (CCG)n Simple_repeat Simple_repeat 1 35 0 189 74 0 0 chr13 119064996 119065023 -679875 + (CGG)n Simple_repeat Simple_repeat 3 29 0 227 253 38 0 chr13 119065135 119065214 -679684 + (CG)n Simple_repeat Simple_repeat 2 83 0 198 71 0 0 chr13 119065247 119065275 -679623 + (CCG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr13 119065318 119065339 -679559 + GC_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr13 119065403 119065448 -679450 + GC_rich Low_complexity Low_complexity 1 45 0 303 85 0 0 chr13 119065728 119065775 -679123 + (CCCCCG)n Simple_repeat Simple_repeat 4 50 0 26 0 0 0 chr13 119066581 119066607 -678291 + GC_rich Low_complexity Low_complexity 1 26 0 245 337 0 0 chr13 119066728 119066811 -678087 + G-rich Low_complexity Low_complexity 1 83 0 189 0 0 0 chr13 119066843 119066864 -678034 + (CGG)n Simple_repeat Simple_repeat 3 23 0 224 187 27 53 chr13 119070209 119070284 -674614 + GA-rich Low_complexity Low_complexity 4 76 0 230 236 28 14 chr13 119070327 119070399 -674499 + G-rich Low_complexity Low_complexity 2 74 0 232 255 20 0 chr13 119071152 119071203 -673695 + (CGTG)n Simple_repeat Simple_repeat 4 55 0 180 0 0 0 chr13 119075868 119075888 -669010 + (T)n Simple_repeat Simple_repeat 1 20 0 255 324 0 10 chr13 119076692 119076794 -668104 + (CACG)n Simple_repeat Simple_repeat 1 101 0 269 228 16 63 chr13 119077050 119077177 -667721 + C-rich Low_complexity Low_complexity 6 126 0 374 299 94 21 chr13 119082161 119082342 -662556 + MIR SINE MIR 38 229 -33 309 100 0 0 chr13 119082857 119082907 -661991 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 367 274 11 11 chr13 119082911 119083006 -661892 - L2 LINE L2 -15 3257 3163 198 0 0 0 chr13 119083235 119083257 -661641 + (T)n Simple_repeat Simple_repeat 1 22 0 321 384 0 8 chr13 119083357 119083482 -661416 + MIR3 SINE MIR 84 207 -1 222 118 0 0 chr13 119084121 119084155 -660743 + (CA)n Simple_repeat Simple_repeat 1 34 0 277 300 139 58 chr13 119085175 119085535 -659363 + L2 LINE L2 2918 3306 -7 521 316 59 26 chr13 119085604 119085876 -659022 + L1MEc LINE L1 521 801 -6024 1076 276 83 62 chr13 119086320 119087285 -657613 + L1MEc LINE L1 1014 2158 -4667 243 0 0 0 chr13 119088258 119088285 -656613 + (TC)n Simple_repeat Simple_repeat 2 28 0 475 263 0 11 chr13 119088379 119088554 -656344 + (CA)n Simple_repeat Simple_repeat 1 173 0 189 297 27 0 chr13 119088950 119089024 -655874 + MER5A DNA MER1_type 27 102 -87 481 305 52 44 chr13 119090107 119090644 -654254 + L1MEd LINE L1 804 1383 -4862 339 253 11 0 chr13 119090736 119090823 -654075 - MER96B DNA MER1_type? 0 417 330 1235 224 69 35 chr13 119091202 119091653 -653245 - MLT1C LTR MaLR -1 466 1 571 248 8 0 chr13 119093293 119093426 -651472 + MER3 DNA MER1_type 16 149 -60 340 281 206 16 chr13 119094187 119094561 -650337 - L2 LINE L2 -1119 2195 1751 433 265 66 31 chr13 119095992 119096188 -648710 - LTR33 LTR ERVL -18 503 301 326 269 199 21 chr13 119096545 119096827 -648071 - LTR33 LTR ERVL -167 354 23 334 258 75 8 chr13 119097358 119097478 -647420 + MIR SINE MIR 23 150 -112 213 276 122 81 chr13 119097621 119097744 -647154 + MIR3 SINE MIR 69 196 -12 225 0 0 0 chr13 119098291 119098316 -646582 + (CA)n Simple_repeat Simple_repeat 1 25 0 244 246 0 0 chr13 119100154 119100211 -644687 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 23 112 0 0 chr13 119100213 119100320 -644578 + AT_rich Low_complexity Low_complexity 1 107 0 185 323 115 0 chr13 119100325 119100421 -644477 - L2 LINE L2 -23 3290 3184 248 284 29 20 chr13 119101524 119101626 -643272 - MIR SINE MIR -114 148 46 408 335 68 0 chr13 119101914 119102090 -642808 + MIR SINE MIR 64 251 -11 322 268 73 111 chr13 119107698 119107959 -636939 - L1MC4 LINE L1 -1 8041 7791 230 369 56 13 chr13 119108376 119108682 -636216 + L1MC4a LINE L1 4387 4705 -1441 292 247 65 19 chr13 119109090 119109244 -635654 + L1MC4a LINE L1 5239 5399 -747 239 283 113 19 chr13 119109246 119109352 -635546 + L1MC4a LINE L1 5433 5548 -2260 651 220 141 82 chr13 119109392 119109496 -635402 + L1MC4a LINE L1 5623 5719 -2089 1994 103 36 98 chr13 119109496 119109801 -635097 + THE1B LTR MaLR 1 278 -86 2331 119 0 0 chr13 119109801 119110112 -634786 + AluY SINE Alu 1 311 0 1994 103 36 98 chr13 119110112 119110194 -634704 + THE1B LTR MaLR 278 364 0 651 220 141 82 chr13 119110194 119110493 -634405 + L1MC4a LINE L1 5719 6050 -1758 14360 130 16 16 chr13 119110661 119113052 -631846 - Tigger1 DNA MER2_type 0 2418 26 800 259 25 38 chr13 119113125 119113441 -631457 + L1ME2 LINE L1 5724 6035 -129 966 215 156 50 chr13 119113634 119114027 -630871 - L1MD3 LINE L1 0 7995 5915 6700 216 48 28 chr13 119114287 119116227 -628671 + L1MA9 LINE L1 2752 4730 -1416 1339 126 0 0 chr13 119116227 119116418 -628480 - AluY SINE Alu -1 310 120 2154 220 19 24 chr13 119116418 119116632 -628266 + L1MA9 LINE L1 4735 4949 -1363 282 56 0 0 chr13 119116632 119116668 -628230 + (CA)n Simple_repeat Simple_repeat 1 36 0 2154 220 19 24 chr13 119116668 119117370 -627528 + L1MA9 LINE L1 4949 5643 -669 252 263 40 0 chr13 119117461 119117537 -627361 + L1MA9 LINE L1 5644 5722 -590 1267 245 43 33 chr13 119120165 119120585 -624313 + L1MA9 LINE L1 5687 6110 -202 1675 195 24 5 chr13 119121069 119121448 -623450 + L1MA9 LINE L1 5258 5643 -669 225 279 38 0 chr13 119121539 119121618 -623280 + L1MA9 LINE L1 5644 5725 -587 1263 248 43 33 chr13 119122731 119123151 -621747 + L1MA9 LINE L1 5687 6110 -202 2243 203 40 18 chr13 119123557 119124235 -620663 + Tigger7 DNA MER2_type 2 2579 -8 2206 114 0 3 chr13 119125660 119125958 -618940 - AluSg SINE Alu -13 297 1 201 238 0 48 chr13 119125979 119126000 -618898 + GA-rich Low_complexity Low_complexity 3 23 -39 1828 93 36 8 chr13 119126000 119126247 -618651 + AluSg SINE Alu 1 254 -56 201 238 0 48 chr13 119126247 119126288 -618610 + GA-rich Low_complexity Low_complexity 23 62 0 874 240 60 11 chr13 119126918 119127185 -617713 - MLT1B LTR MaLR -12 378 99 2846 227 81 38 chr13 119127202 119127719 -617179 - L1MA8 LINE L1 -10 6281 5707 1389 234 19 27 chr13 119127719 119128087 -616811 - MLT1A1 LTR MaLR 0 365 1 2846 227 81 38 chr13 119128087 119128468 -616430 - L1MA8 LINE L1 -584 5707 5344 549 203 32 8 chr13 119128474 119128597 -616301 - MLT1B LTR MaLR -264 126 1 266 308 0 0 chr13 119128915 119129013 -615885 - MIR SINE MIR -63 145 53 246 272 160 0 chr13 119129669 119129794 -615104 + MIR SINE MIR 2 146 -116 589 244 38 0 chr13 119130036 119130196 -614702 - MER3 DNA MER1_type -86 123 5 258 282 154 44 chr13 119130246 119130473 -614425 + L1MC5 LINE L1 7394 7645 -316 3770 192 43 28 chr13 119130501 119130653 -614245 - L1MB3 LINE L1 -7 6176 6028 207 0 0 0 chr13 119130653 119130676 -614222 + (CCCCCT)n Simple_repeat Simple_repeat 4 26 0 3770 192 43 28 chr13 119130676 119130710 -614188 - L1MB3 LINE L1 -155 6028 5996 1980 143 16 3 chr13 119130710 119131017 -613881 - AluSq SINE Alu -2 311 1 3770 192 43 28 chr13 119131017 119131899 -612999 - L1MB3 LINE L1 -187 5996 5086 433 264 75 49 chr13 119131899 119132164 -612734 + L1MC5 LINE L1 7642 7913 -48 582 250 62 7 chr13 119132830 119132974 -611924 - MIR SINE MIR -75 187 36 3563 258 100 20 chr13 119134821 119135315 -609583 + Charlie1a DNA MER1_type 32 485 -2276 2300 113 0 3 chr13 119135315 119135624 -609274 + AluSx SINE Alu 1 308 -4 3563 258 100 20 chr13 119135624 119136437 -608461 + Charlie1a DNA MER1_type 485 1444 -11 25 0 0 0 chr13 119136672 119136697 -608201 + AT_rich Low_complexity Low_complexity 1 25 0 774 99 53 0 chr13 119138011 119138182 -606716 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 248 241 106 53 chr13 119138531 119138738 -606160 - MLT1L LTR MaLR -19 596 379 316 344 51 13 chr13 119143230 119143387 -601511 - MIR SINE MIR -70 192 30 204 40 0 0 chr13 119143467 119143492 -601406 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 221 359 47 47 chr13 119144043 119144213 -600685 - L2 LINE L2 -7 3265 3096 1322 214 5 103 chr13 119144613 119145039 -599859 + MLT1B LTR MaLR 1 384 -6 1740 154 69 36 chr13 119145803 119146166 -598732 - THE1C LTR MaLR 0 375 1 9939 120 60 11 chr13 119146166 119147671 -597227 - THE1C-int LTR MaLR 0 1580 2 1870 113 113 35 chr13 119147671 119148015 -596883 - THE1C LTR MaLR -2 373 1 1948 189 24 5 chr13 119148114 119148495 -596403 - MSTD LTR MaLR -8 388 1 2423 195 106 59 chr13 119148495 119148734 -596164 - MSTD-int LTR MaLR 0 1735 1509 1875 175 7 19 chr13 119148734 119149043 -595855 + AluJo SINE Alu 1 305 -7 2423 195 106 59 chr13 119149043 119149398 -595500 - MSTD-int LTR MaLR -226 1509 1113 651 181 9 9 chr13 119149518 119149634 -595264 - FLAM_A SINE Alu -19 123 8 1564 108 10 0 chr13 119150786 119150990 -593908 - AluSg/x SINE Alu -21 289 84 619 286 68 0 chr13 119151376 119151568 -593330 - MIR SINE MIR -12 250 46 23 33 0 0 chr13 119151785 119151815 -593083 + AT_rich Low_complexity Low_complexity 1 30 0 358 229 133 0 chr13 119153133 119153238 -591660 + MIR SINE MIR 73 191 -71 487 192 10 0 chr13 119153612 119153716 -591182 + L1 LINE L1 4954 5058 -1088 509 224 8 0 chr13 119153752 119153877 -591021 - L1MA10 LINE L1 -29 6305 6180 2199 174 41 29 chr13 119153951 119154713 -590185 - L1MA8 LINE L1 -29 6305 5489 2205 125 3 0 chr13 119154713 119155010 -589888 - AluSx SINE Alu -14 298 1 2199 174 41 29 chr13 119155010 119155075 -589823 - L1MA8 LINE L1 -845 5489 5426 386 113 0 0 chr13 119155071 119155142 -589756 - L1MA9 LINE L1 -25 6287 6217 * 918 178 43 0 chr13 119155150 119155381 -589517 - L1MA8 LINE L1 -2954 3192 2952 1345 233 88 9 chr13 119156159 119156589 -588309 + MLT1C LTR MaLR 3 466 -1 698 134 0 0 chr13 119156802 119156899 -587999 - AluSg/x SINE Alu -95 215 119 1345 233 88 9 chr13 119157024 119157454 -587444 + MLT1C LTR MaLR 3 466 -1 199 305 42 42 chr13 119157883 119157978 -586920 - MIR SINE MIR -102 160 66 360 94 0 0 chr13 119158557 119158610 -586288 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 1248 220 8 4 chr13 119158766 119159007 -585891 - AluJo SINE Alu -32 280 39 796 229 6 6 chr13 119160056 119160231 -584667 - L1MB4 LINE L1 -2 6178 6004 192 125 0 0 chr13 119162140 119162172 -582726 + (CCCG)n Simple_repeat Simple_repeat 4 35 0 447 308 6 19 chr13 119162770 119163308 -581590 + (CA)n Simple_repeat Simple_repeat 1 530 0 357 353 7 7 chr13 119163324 119163460 -581438 + (CA)n Simple_repeat Simple_repeat 2 137 0 351 289 11 53 chr13 119163498 119163685 -581213 + (CATA)n Simple_repeat Simple_repeat 1 179 0 * 473 336 3 33 chr13 119163551 119163973 -580925 + (CA)n Simple_repeat Simple_repeat 1 409 0 216 122 0 0 chr13 119165718 119165759 -579139 + (GA)n Simple_repeat Simple_repeat 2 42 0 1311 97 38 11 chr13 119167064 119167250 -577648 - AluSp SINE Alu -5 308 118 275 319 0 0 chr13 119169034 119169106 -575792 - MIR3 SINE MIR -33 175 104 314 349 95 0 chr13 119169139 119169265 -575633 - MIR3 SINE MIR -32 176 39 24 0 0 0 chr13 119171781 119171805 -573093 + AT_rich Low_complexity Low_complexity 1 24 0 1694 196 0 3 chr13 119172092 119172393 -572505 - AluJb SINE Alu -12 300 1 357 183 0 0 chr13 119172612 119172683 -572215 + Charlie5 DNA MER1_type 2327 2397 -215 316 136 0 17 chr13 119172702 119172761 -572137 - L1MC1 LINE L1 -6 6327 6270 1079 236 84 63 chr13 119172780 119172940 -571958 + LTR64 LTR ERVK 21 176 -382 2378 54 0 41 chr13 119172940 119173159 -571739 + L1PA8 LINE L1 5864 6068 -104 2447 101 0 3 chr13 119173159 119173466 -571432 + AluSq SINE Alu 1 306 -7 2378 54 0 41 chr13 119173466 119173561 -571337 + L1PA8 LINE L1 6068 6165 -7 1079 236 84 63 chr13 119173561 119173815 -571083 + LTR64 LTR ERVK 176 444 -114 403 265 34 0 chr13 119173846 119173963 -570935 + LTR64 LTR ERVK 397 517 -41 1858 104 4 8 chr13 119173963 119174253 -570645 + AluSx SINE Alu 34 322 0 500 166 46 53 chr13 119174271 119174422 -570476 + Charlie5 DNA MER1_type 2436 2585 -27 2258 110 17 7 chr13 119174472 119174773 -570125 + AluSx SINE Alu 9 312 0 410 324 69 14 chr13 119175776 119175992 -568906 + MIR SINE MIR 14 241 -21 816 171 0 0 chr13 119177687 119177851 -567047 + (TCCA)n Simple_repeat Simple_repeat 2 165 0 277 145 65 16 chr13 119177856 119177918 -566980 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 735 210 0 0 chr13 119177919 119178095 -566803 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 720 214 0 0 chr13 119178125 119178303 -566595 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 888 198 6 0 chr13 119178317 119178645 -566253 + (TCCA)n Simple_repeat Simple_repeat 1 330 0 540 125 16 94 chr13 119179076 119179204 -565694 - MER69A DNA AcHobo 0 177 60 1112 192 5 14 chr13 119179306 119179520 -565378 + MER20 DNA MER1_type 6 217 -2 1485 204 21 101 chr13 119183411 119183945 -560953 + L1MB2 LINE L1 5681 6171 0 399 321 84 0 chr13 119188707 119188897 -556001 - LTR16C LTR ERVL 0 491 286 180 0 0 0 chr13 119190639 119190659 -554239 + (TC)n Simple_repeat Simple_repeat 1 20 0 1374 243 62 2 chr13 119191075 119191479 -553419 - MLT1C LTR MaLR -39 428 1 2299 99 0 0 chr13 119191582 119191887 -553011 - AluSx SINE Alu 0 305 1 249 83 0 0 chr13 119192886 119192922 -551976 + (A)n Simple_repeat Simple_repeat 1 36 0 973 240 68 11 chr13 119193845 119194211 -550687 + LTR53 LTR ERVL 1 387 -132 498 223 41 8 chr13 119194398 119194519 -550379 + LTR53 LTR ERVL 395 519 0 237 376 0 0 chr13 119195070 119195179 -549719 - MIR SINE MIR -134 128 20 874 222 64 5 chr13 119195716 119195919 -548979 + MER20 DNA MER1_type 1 215 -4 642 253 51 33 chr13 119195997 119196201 -548697 - MIR SINE MIR -14 248 40 186 118 0 0 chr13 119196347 119196381 -548517 + (TG)n Simple_repeat Simple_repeat 1 34 0 516 200 0 0 chr13 119196409 119196589 -548309 + (TG)n Simple_repeat Simple_repeat 1 180 0 1620 226 92 22 chr13 119196845 119197336 -547562 - Tigger6b DNA MER2_type 0 1597 1073 918 231 249 18 chr13 119197368 119197755 -547143 - Tigger6b DNA MER2_type -589 1008 14 771 177 0 0 chr13 119198137 119198597 -546301 + (TG)n Simple_repeat Simple_repeat 1 460 0 254 276 17 0 chr13 119199587 119199645 -545253 + MER5A DNA MER1_type 51 109 -80 209 257 30 89 chr13 119200169 119200270 -544628 - MIR SINE MIR -10 252 158 14229 210 14 10 chr13 119201155 119206862 -538036 + L1PBa LINE L1 6 6009 -853 351 113 0 0 chr13 119206879 119206932 -537966 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 2620 90 0 3 chr13 119206937 119207291 -537607 + L1PB1 LINE L1 5799 6151 0 1508 206 35 10 chr13 119207333 119207678 -537220 + L1MD2 LINE L1 5769 6121 -238 807 203 7 0 chr13 119207694 119207847 -537051 + L1MD2 LINE L1 6191 6344 -15 333 301 30 48 chr13 119207860 119208026 -536872 + L1MC4a LINE L1 5768 5930 -1878 2047 100 0 4 chr13 119208038 119208307 -536591 + AluY SINE Alu 37 304 -7 345 228 50 10 chr13 119208789 119208890 -536008 + CT-rich Low_complexity Low_complexity 1 105 0 439 263 70 53 chr13 119210541 119210712 -534186 + MIR SINE MIR 68 241 -21 2214 124 0 0 chr13 119212230 119212529 -532369 - AluSg SINE Alu -11 299 1 901 199 17 6 chr13 119213388 119213569 -531329 + MER5A DNA MER1_type 5 187 -2 368 285 169 0 chr13 119215595 119215767 -529131 + Charlie2 DNA MER1_type 87 287 -2495 355 224 19 0 chr13 119215850 119215957 -528941 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 310 278 53 33 chr13 119216033 119216184 -528714 + MLT1I LTR MaLR 5 158 -251 291 288 9 9 chr13 119216399 119216510 -528388 + Charlie2a DNA MER1_type 1522 1632 -1230 360 301 23 0 chr13 119216511 119216644 -528254 + Charlie2a DNA MER1_type 2720 2855 -7 317 225 62 0 chr13 119216702 119216782 -528116 + MLT1C LTR MaLR 8 92 -375 200 132 53 0 chr13 119217506 119217544 -527354 + CT-rich Low_complexity Low_complexity 2 41 0 573 286 74 30 chr13 119225644 119225941 -518957 - LTR16C LTR ERVL -1 490 181 693 216 13 13 chr13 119226131 119226284 -518614 + FRAM SINE Alu 1 153 -13 1249 212 85 9 chr13 119229518 119229529 -515369 - MER74A LTR ERVL 0 558 549 2017 142 13 3 chr13 119229529 119229831 -515067 - AluSq SINE Alu -8 305 1 1249 212 85 9 chr13 119229831 119230260 -514638 - MER74A LTR ERVL -9 549 1 344 151 51 0 chr13 119231230 119231308 -513590 + L1MA2 LINE L1 6214 6298 -2 2141 142 0 3 chr13 119232024 119232334 -512564 + AluSx SINE Alu 1 309 -3 247 167 37 0 chr13 119232432 119232486 -512412 + AluSp/q SINE Alu 248 303 0 292 179 0 0 chr13 119232563 119232619 -512279 + AluSp/q SINE Alu 248 303 0 383 213 0 8 chr13 119233014 119233141 -511757 + G-rich Low_complexity Low_complexity 2 127 0 22 0 0 0 chr13 119234643 119234665 -510233 + AT_rich Low_complexity Low_complexity 1 22 0 261 349 167 22 chr13 119234670 119234939 -509959 + L3 LINE CR1 483 790 -787 361 288 112 0 chr13 119234939 119235064 -509834 - MER63A DNA MER1_type 0 210 72 262 228 35 0 chr13 119235093 119235150 -509748 - MER63A DNA MER1_type 0 115 57 254 246 35 0 chr13 119235160 119235217 -509681 - MER63A DNA MER1_type 0 113 55 260 282 28 0 chr13 119235294 119235365 -509533 - MER63A DNA MER1_type 0 115 43 364 288 36 18 chr13 119235365 119235476 -509422 - MER63A DNA MER1_type 0 115 3 212 352 32 24 chr13 119235799 119235924 -508974 + MIR SINE MIR 64 189 -73 263 239 0 30 chr13 119236433 119236500 -508398 + MER77 LTR ERV1 66 130 -475 308 317 37 12 chr13 119236843 119237068 -507830 + MER21A LTR ERV1 522 799 -9 2244 118 3 6 chr13 119239996 119240309 -504589 + AluSx SINE Alu 1 312 0 715 239 14 2 chr13 119241232 119241508 -503390 - MLT1A1 LTR MaLR -3 362 32 1212 148 92 16 chr13 119241608 119241858 -503040 + THE1C LTR MaLR 103 371 -4 227 203 17 0 chr13 119242249 119242308 -502590 + (ATG)n Simple_repeat Simple_repeat 1 60 0 360 336 14 20 chr13 119242712 119242858 -502040 + (CATG)n Simple_repeat Simple_repeat 3 147 0 268 394 0 22 chr13 119242962 119243142 -501756 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 * 302 456 0 0 chr13 119243102 119243317 -501581 + (CGTG)n Simple_repeat Simple_repeat 1 215 0 411 300 7 7 chr13 119243430 119243570 -501328 - L1ME2 LINE L1 -1 6163 6024 362 128 26 13 chr13 119243910 119243988 -500910 + MADE1 DNA Mariner 1 79 -1 215 346 103 0 chr13 119243997 119244104 -500794 - MIR SINE MIR -42 220 103 4247 241 59 38 chr13 119246664 119249884 -495014 + L1M4 LINE L1 795 4193 -2451 4982 225 59 8 chr13 119249904 119251717 -493181 + L1M4 LINE L1 4358 6270 -412 912 214 102 36 chr13 119251713 119251896 -493002 - L1ME LINE L1 -581 5581 5411 * 1891 115 43 29 chr13 119251896 119252175 -492723 - AluSq SINE Alu -26 287 5 912 214 102 36 chr13 119252175 119252514 -492384 - L1ME LINE L1 -751 5411 5035 987 284 132 14 chr13 119252521 119252758 -492140 + L1MC3 LINE L1 5610 5818 -1967 2016 155 0 0 chr13 119252758 119253054 -491844 + AluJb SINE Alu 1 296 -16 987 284 132 14 chr13 119253054 119253323 -491575 + L1MC3 LINE L1 5818 6176 -1609 2293 91 7 3 chr13 119256922 119257218 -487680 + AluSq SINE Alu 1 297 -16 192 77 0 0 chr13 119259018 119259044 -485854 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 459 314 55 5 chr13 119261944 119262233 -482665 + L2 LINE L2 2757 3060 -253 1128 157 0 17 chr13 119262247 119262425 -482473 - FRAM SINE Alu -4 172 1 1924 139 23 10 chr13 119262465 119262767 -482131 - AluJb SINE Alu -2 310 5 674 163 141 0 chr13 119262903 119263038 -481860 + MIR SINE MIR 77 230 -32 1888 116 0 0 chr13 119263147 119263389 -481509 + AluSx SINE Alu 3 244 -68 2455 82 7 0 chr13 119263616 119263921 -480977 + AluSx SINE Alu 1 307 -5 299 253 23 23 chr13 119263924 119264011 -480887 - L2 LINE L2 -480 2834 2748 447 157 0 0 chr13 119264107 119264177 -480721 - AluJ/FLAM SINE Alu -242 70 1 2440 76 0 3 chr13 119467690 119467993 -276905 + AluSc SINE Alu 1 302 -7 956 194 97 0 chr13 119468169 119468375 -276523 + L1MB7 LINE L1 5333 5558 -616 582 42 0 0 chr13 119468375 119468447 -276451 + L1PA5 LINE L1 6080 6151 -3 2985 158 70 18 chr13 119468494 119469097 -275801 + L1MB7 LINE L1 5551 6184 0 2406 87 0 7 chr13 119469857 119470187 -274711 + AluSg SINE Alu 1 328 0 37 0 0 0 chr13 119470301 119470338 -274560 + AT_rich Low_complexity Low_complexity 1 37 0 1067 94 0 14 chr13 119470346 119470484 -274414 - AluSx SINE Alu -144 168 33 805 156 0 15 chr13 119470562 119470697 -274201 + FLAM_C SINE Alu 1 133 0 211 292 0 15 chr13 119470861 119470926 -273972 + MIR SINE MIR 11 74 -188 231 233 17 17 chr13 119471808 119471868 -273030 + GA-rich Low_complexity Low_complexity 2 61 0 224 113 16 48 chr13 119471880 119471942 -272956 + (GGA)n Simple_repeat Simple_repeat 1 60 0 * 275 352 11 34 chr13 119471939 119472118 -272780 + GA-rich Low_complexity Low_complexity 1 175 0 * 344 246 34 23 chr13 119472091 119472266 -272632 + A-rich Low_complexity Low_complexity 4 180 0 * 466 172 45 19 chr13 119472223 119472380 -272518 + GA-rich Low_complexity Low_complexity 5 165 0 1466 167 39 68 chr13 119473736 119474047 -270851 + AluJb SINE Alu 1 302 -10 432 178 59 18 chr13 119474360 119474664 -270234 + (TG)n Simple_repeat Simple_repeat 1 316 0 210 274 14 14 chr13 119474903 119474976 -269922 + L2 LINE L2 2857 2929 -384 621 95 32 11 chr13 119476620 119476715 -268183 - LTR24B LTR ERV1 -479 97 1 1016 164 177 64 chr13 119476843 119477154 -267744 - MLT1D LTR MaLR -97 408 63 1905 133 82 58 chr13 119477229 119477656 -267242 + LTR23 LTR ERV1 1 437 0 645 118 18 0 chr13 119477783 119477893 -267005 + MSTA LTR MaLR 1 112 -316 1133 361 37 58 chr13 119477896 119478233 -266665 + MSTA LTR MaLR 58 388 -40 2204 117 0 3 chr13 119478233 119478541 -266357 - AluSq SINE Alu -6 307 1 1133 361 37 58 chr13 119478541 119478582 -266316 + MSTA LTR MaLR 388 428 0 2357 140 8 0 chr13 119478582 119478946 -265952 + MSTA-int LTR MaLR 1 367 -1284 990 264 153 5 chr13 119478946 119479325 -265573 + LTR34 LTR ERV1 261 695 -4 23 54 0 0 chr13 119479648 119479685 -265213 + AT_rich Low_complexity Low_complexity 1 37 0 2173 179 82 2 chr13 119479686 119480110 -264788 - LTR24 LTR ERV1 0 467 10 1061 280 138 22 chr13 119480320 119480870 -264028 - L1MC4a LINE L1 -1880 5928 5315 1806 159 31 7 chr13 119482744 119483034 -261864 - AluJo SINE Alu -7 305 9 189 259 153 55 chr13 119483312 119483548 -261350 + L2 LINE L2 2679 2937 -377 21 0 0 0 chr13 119485458 119485479 -259419 + AT_rich Low_complexity Low_complexity 1 21 0 648 258 11 6 chr13 119485480 119485658 -259240 - L1MB8 LINE L1 -13 6165 5987 2096 108 3 17 chr13 119485662 119485958 -258940 - AluY SINE Alu -18 293 2 923 139 0 35 chr13 119485964 119486108 -258790 - AluJo SINE Alu -173 139 1 492 202 44 87 chr13 119486688 119486871 -258027 - MIR SINE MIR -86 176 2 1831 166 7 10 chr13 119487219 119487520 -257378 + AluJo SINE Alu 1 300 -12 194 149 64 43 chr13 119488086 119488133 -256765 + MER5B DNA MER1_type 128 175 -3 370 103 46 126 chr13 119488230 119488317 -256581 + MER20 DNA MER1_type 1 80 -139 509 139 13 0 chr13 119489736 119489815 -255083 - MADE1 DNA Mariner 0 80 1 316 247 56 0 chr13 119490725 119490814 -254084 + MER5A DNA MER1_type 9 102 -87 260 169 0 17 chr13 119492357 119492416 -252482 + CT-rich Low_complexity Low_complexity 3 60 0 1428 142 75 41 chr13 119492441 119492709 -252189 - AluJo SINE Alu -35 277 1 24 41 0 20 chr13 119492810 119492837 -252061 + AT_rich Low_complexity Low_complexity 1 28 -20 2018 139 10 3 chr13 119492837 119493125 -251773 + AluSq SINE Alu 1 290 -23 24 41 0 20 chr13 119493125 119493146 -251752 + AT_rich Low_complexity Low_complexity 28 48 0 313 267 112 9 chr13 119493521 119493637 -251261 + MIR SINE MIR 20 147 -115 2179 129 0 0 chr13 119493640 119493935 -250963 + AluSx SINE Alu 1 295 -17 3241 106 23 81 chr13 119494157 119494716 -250182 - MER1A DNA MER1_type 0 527 1 1007 192 0 6 chr13 119495273 119495450 -249448 + AluJo SINE Alu 127 302 -10 2252 112 3 0 chr13 119495452 119495756 -249142 + AluSx SINE Alu 1 305 -7 631 248 128 13 chr13 119496478 119496704 -248194 + MIR SINE MIR 8 259 -3 193 281 105 41 chr13 119496700 119496871 -248027 - L3 LINE CR1 -715 862 681 * 1055 198 62 33 chr13 119496885 119497127 -247771 - MLT1A2 LTR MaLR 0 374 126 501 221 71 52 chr13 119497534 119497688 -247210 - MLT1A2 LTR MaLR -233 157 1 425 363 44 19 chr13 119497711 119497981 -246917 - L3 LINE CR1 -1019 558 282 1205 182 0 15 chr13 119498093 119498296 -246602 + AluJo SINE Alu 1 200 -112 2462 266 53 17 chr13 119498461 119498648 -246250 - L1MEc LINE L1 -3217 3165 2986 2418 79 3 3 chr13 119498648 119498952 -245946 + AluSx SINE Alu 1 304 -8 2462 266 53 17 chr13 119498952 119499946 -244952 - L1MEc LINE L1 -3396 2986 1933 2125 113 107 19 chr13 119499946 119500310 -244588 + MER4B LTR ERV1 1 396 -214 358 330 0 0 chr13 119500335 119500438 -244460 - L1MEc LINE L1 -4599 1785 1683 230 248 99 87 chr13 119500438 119500599 -244299 - L1MEc LINE L1 -4504 2321 2159 1014 167 109 5 chr13 119500692 119500902 -243996 + MER46A DNA MER2_type 5 236 0 1492 173 47 4 chr13 119500905 119501160 -243738 - AluJo SINE Alu -33 279 14 1544 212 27 46 chr13 119501168 119501540 -243358 - L1MEc LINE L1 -6164 378 14 2372 97 0 0 chr13 119503017 119503326 -241572 - AluSg SINE Alu -1 309 1 2873 197 43 25 chr13 119503459 119504057 -240841 - MER82 DNA MER2_type -25 628 20 2003 147 13 3 chr13 119504057 119504356 -240542 + AluSx SINE Alu 1 302 -10 335 194 245 43 chr13 119505664 119505803 -239095 + MER5A DNA MER1_type 22 188 -1 272 371 81 15 chr13 119506105 119506302 -238596 - L2 LINE L2 0 3272 3063 198 320 20 69 chr13 119506685 119506888 -238010 - L2 LINE L2 -887 2427 2235 303 278 0 0 chr13 119507527 119507617 -237281 + MER103 DNA DNA 2 91 -75 556 209 171 5 chr13 119508660 119508870 -236028 - HsTC2b DNA Tc2 -3 915 671 403 294 173 23 chr13 119508938 119509244 -235654 - HsTC2b DNA Tc2 -560 355 4 2310 77 0 45 chr13 119509507 119509818 -235080 + AluSc SINE Alu 1 297 -12 2011 119 27 10 chr13 119509855 119510149 -234749 - AluSq SINE Alu -14 299 1 397 224 68 54 chr13 119510183 119510330 -234568 - L1MC5 LINE L1 -51 7910 7762 2138 114 3 7 chr13 119511060 119511358 -233540 - AluSp SINE Alu -16 297 1 1574 176 14 14 chr13 119511364 119511642 -233256 - MER51A-int LTR ERV1 -3588 2358 2081 2293 77 0 10 chr13 119511939 119512236 -232662 - AluY SINE Alu -17 294 1 2022 99 30 43 chr13 119512608 119512910 -231988 + AluSq SINE Alu 1 298 -15 257 250 0 0 chr13 119513179 119513251 -231647 - MER51A-int LTR ERV1 -5576 2180 2109 1494 158 58 34 chr13 119513289 119513581 -231317 - MER51A-int LTR ERV1 -4560 320 22 355 101 87 43 chr13 119513627 119513696 -231202 - MER51A-int LTR ERV1 -7744 72 1 1028 141 310 15 chr13 119513696 119514033 -230865 - MER51A LTR ERV1 0 640 1 857 172 45 6 chr13 119514084 119514241 -230657 + FRAM SINE Alu 9 171 -5 552 220 88 25 chr13 119514245 119514404 -230494 + L1ME3 LINE L1 5436 5604 -560 372 275 109 35 chr13 119514408 119514828 -230070 - MLT1H LTR MaLR 0 549 26 988 297 52 44 chr13 119514862 119515099 -229799 + L1ME3 LINE L1 5617 5851 -311 2229 98 0 3 chr13 119515099 119515404 -229494 - AluSx SINE Alu -4 308 5 988 297 52 44 chr13 119515404 119515473 -229425 + L1ME3 LINE L1 5851 5918 -244 2662 115 52 2 chr13 119515473 119515881 -229017 - MSTA LTR MaLR 0 428 1 988 297 52 44 chr13 119515881 119516071 -228827 + L1ME3 LINE L1 5918 6118 -44 230 282 118 12 chr13 119516137 119516222 -228676 + MIR SINE MIR 44 137 -71 2503 59 0 0 chr13 119516317 119516623 -228275 - AluY SINE Alu -5 306 1 2262 67 0 23 chr13 119516883 119517183 -227715 - AluY SINE Alu -18 293 1 2362 200 139 10 chr13 119518097 119518761 -226137 - L1MD3 LINE L1 0 7995 6999 8834 134 88 112 chr13 119518769 119518958 -225940 - Tigger1 DNA MER2_type 0 2418 2226 1655 90 0 55 chr13 119518958 119519214 -225684 + AluSg/x SINE Alu 69 310 0 8834 134 88 112 chr13 119519214 119519661 -225237 - Tigger1 DNA MER2_type -192 2226 1770 778 191 7 0 chr13 119519661 119519802 -225096 - FLAM_A SINE Alu 0 142 1 8834 134 88 112 chr13 119519802 119520987 -223911 - Tigger1 DNA MER2_type -648 1770 503 2009 258 77 8 chr13 119520990 119521012 -223886 - L1M4 LINE L1 -4952 1590 1571 184 0 97 0 chr13 119521012 119521043 -223855 + T-rich Low_complexity Low_complexity 2 35 0 2009 258 77 8 chr13 119521043 119521737 -223161 - L1M4 LINE L1 -4971 1571 825 1556 177 10 13 chr13 119521739 119522038 -222860 - AluJo SINE Alu -14 298 1 287 320 0 39 chr13 119522280 119522433 -222465 - L1M4 LINE L1 -6394 148 2 2433 69 0 0 chr13 119522484 119522787 -222111 + AluY SINE Alu 1 303 -8 1982 132 0 0 chr13 119523375 119523671 -221227 - AluSx SINE Alu -16 296 1 22 0 0 0 chr13 119523683 119523705 -221193 + AT_rich Low_complexity Low_complexity 1 22 0 182 305 47 55 chr13 119524830 119524958 -219940 + L3 LINE CR1 903 1029 -548 23 0 0 0 chr13 119525935 119525958 -218940 + AT_rich Low_complexity Low_complexity 1 23 0 1679 71 104 26 chr13 119526449 119526718 -218180 + AluSx SINE Alu 1 290 -22 21 82 0 0 chr13 119526993 119527042 -217856 + GC_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr13 119527687 119527717 -217181 + GC_rich Low_complexity Low_complexity 1 30 0 1582 116 53 42 chr13 119528283 119528568 -216330 - AluJb SINE Alu -24 288 1 31 26 0 0 chr13 119528648 119528686 -216212 + AT_rich Low_complexity Low_complexity 1 38 0 1942 111 0 0 chr13 119529330 119529601 -215297 + AluSg SINE Alu 1 271 -39 222 171 0 0 chr13 119529606 119529647 -215251 + (TG)n Simple_repeat Simple_repeat 2 42 0 1854 148 0 7 chr13 119529663 119529960 -214938 + AluSx SINE Alu 1 295 -17 361 169 0 0 chr13 119529975 119530034 -214864 - L1M3 LINE L1 -585 5583 5525 812 141 7 7 chr13 119530058 119530193 -214705 - FLAM_C SINE Alu 0 143 9 1724 176 44 22 chr13 119530224 119530588 -214310 - L1M3 LINE L1 -1029 5117 4746 1089 157 117 68 chr13 119531028 119531309 -213589 + MSTD LTR MaLR 102 396 0 819 288 66 40 chr13 119531386 119532112 -212786 - L1M3 LINE L1 -1857 4289 3545 6272 141 50 6 chr13 119532229 119533421 -211477 - L1MC1 LINE L1 -1 6332 5089 2331 90 0 0 chr13 119533622 119533921 -210977 + AluSc SINE Alu 1 299 -10 2206 99 3 6 chr13 119535099 119535413 -209485 - AluSp SINE Alu 0 313 1 349 234 14 50 chr13 119536019 119536160 -208738 + GA-rich Low_complexity Low_complexity 1 136 0 317 125 0 62 chr13 119536481 119536545 -208353 - L1PA16 LINE L1 0 6166 6107 235 209 0 0 chr13 119536588 119536631 -208267 - L1PA16 LINE L1 -17 6149 6107 232 186 0 0 chr13 119536803 119536846 -208052 - L1PA16 LINE L1 -17 6149 6107 245 163 0 0 chr13 119536889 119536932 -207966 - L1PA16 LINE L1 -17 6149 6107 232 186 0 0 chr13 119536975 119537018 -207880 - L1PA16 LINE L1 -17 6149 6107 864 170 33 7 chr13 119537018 119537171 -207727 - L1PA15 LINE L1 -17 6148 5992 2164 69 4 0 chr13 119537199 119537474 -207424 + AluSg SINE Alu 29 304 -6 2153 105 0 0 chr13 119537480 119537774 -207124 + AluSx SINE Alu 1 294 -18 622 207 0 0 chr13 119538219 119538330 -206568 + AluJo/FLAM SINE Alu 2 112 -200 809 144 0 8 chr13 119538330 119538462 -206436 - AluJb SINE Alu -181 131 1 256 0 0 0 chr13 119538624 119538653 -206245 + AluY SINE Alu 258 286 -15 2449 65 0 3 chr13 119538653 119538961 -205937 + AluY SINE Alu 1 307 -4 209 333 15 0 chr13 119539570 119539636 -205262 + L2 LINE L2 3198 3264 -49 2583 211 68 36 chr13 119539636 119539926 -204972 + MER21B LTR ERV1 25 304 -559 2173 105 3 0 chr13 119539926 119540222 -204676 + AluSg SINE Alu 1 297 -13 2583 211 68 36 chr13 119540222 119540624 -204274 + MER21B LTR ERV1 304 739 -124 2038 117 3 0 chr13 119541372 119541672 -203226 + AluSg SINE Alu 1 301 -9 1155 131 0 0 chr13 119541673 119541841 -203057 + AluSg/x SINE Alu 124 291 -19 2269 93 0 3 chr13 119541912 119542213 -202685 + AluSq SINE Alu 1 300 -13 1025 138 0 0 chr13 119542213 119542373 -202525 + AluSg/x SINE Alu 134 293 -19 314 282 48 10 chr13 119542452 119542555 -202343 - L1ME LINE L1 -296 5825 5719 315 332 65 58 chr13 119542961 119543238 -201660 - HAL1 LINE L1 -1132 1375 1097 1841 119 11 18 chr13 119544162 119544356 -200542 - AluSx SINE Alu 0 330 137 1999 125 13 0 chr13 119544356 119544659 -200239 - AluSp SINE Alu -6 307 1 1841 119 11 18 chr13 119544659 119544796 -200102 - AluSx SINE Alu -193 137 1 870 116 0 22 chr13 119544796 119544934 -199964 - AluSq/x SINE Alu -177 135 1 2233 90 0 7 chr13 119545001 119545301 -199597 + AluY SINE Alu 1 298 -13 941 163 84 0 chr13 119546434 119546612 -198286 - L1MD2 LINE L1 -337 6022 5830 2159 93 7 0 chr13 119546641 119546932 -197966 + AluSq SINE Alu 1 293 -20 2069 125 0 0 chr13 119547325 119547628 -197270 + AluSq SINE Alu 1 303 -10 204 260 0 0 chr13 119549708 119549758 -195140 - MIR SINE MIR -13 249 200 324 0 0 0 chr13 119549846 119549882 -195016 + (TG)n Simple_repeat Simple_repeat 2 37 0 316 256 238 89 chr13 119550477 119550758 -194140 + L1ME4a LINE L1 5797 6119 -2 182 222 0 0 chr13 119550796 119550832 -194066 - L2 LINE L2 -1388 1926 1891 675 210 6 49 chr13 119550842 119551004 -193894 - L2 LINE L2 -1 3312 3158 1367 249 97 7 chr13 119551995 119552440 -192458 + Charlie4a DNA MER1_type 22 506 -2 689 286 58 10 chr13 119552462 119552668 -192230 - MIR SINE MIR 0 262 47 3003 108 0 2 chr13 119553005 119553402 -191496 + MER1A DNA MER1_type 1 396 -133 372 185 49 0 chr13 119553443 119553524 -191374 + MER4D LTR ERV1 787 871 -1 1516 193 106 3 chr13 119553922 119554270 -190628 - L1MB8 LINE L1 -11 6978 6595 1107 272 95 44 chr13 119554306 119554335 -190563 + L1M4 LINE L1 143 169 -6690 2385 87 3 0 chr13 119554335 119554646 -190252 + AluSx SINE Alu 1 312 0 1107 272 95 44 chr13 119554646 119555112 -189786 + L1M4 LINE L1 169 663 -6196 812 207 12 0 chr13 119555191 119555360 -189538 + L1M4 LINE L1 4971 5141 -1816 * 3304 194 56 31 chr13 119555355 119556295 -188603 - L1MB8 LINE L1 -487 6502 5525 2586 147 64 0 chr13 119556295 119556716 -188182 + MER83 LTR ERV1 1 448 0 3304 194 56 31 chr13 119556716 119556862 -188036 - L1MB8 LINE L1 -1464 5525 5384 2177 110 110 22 chr13 119556886 119557251 -187647 + MER61C LTR ERV1 38 434 0 1578 219 33 3 chr13 119557258 119557647 -187251 - L1MB8 LINE L1 -1586 5371 4971 1831 272 92 30 chr13 119557659 119558388 -186510 - L1MB8 LINE L1 -6075 784 11 722 152 0 0 chr13 119558467 119558593 -186305 + L1ME LINE L1 5685 5810 -354 551 247 86 5 chr13 119558590 119558870 -186028 + L1MA10 LINE L1 5863 6321 -1 * 21 0 0 0 chr13 119559348 119559369 -185529 + AT_rich Low_complexity Low_complexity 1 21 0 228 344 78 0 chr13 119559547 119559675 -185223 + L3b LINE CR1 1184 1321 -262 268 301 142 0 chr13 119559863 119560046 -184852 + MIR SINE MIR 22 230 -32 1742 73 8 4 chr13 119562318 119562566 -182332 + AluSc SINE Alu 61 309 0 1845 129 0 7 chr13 119562576 119562855 -182043 + AluSx SINE Alu 19 295 -17 3429 136 57 24 chr13 119562987 119563568 -181330 + MER4D LTR ERV1 1 600 -303 2113 81 19 39 chr13 119564144 119564451 -180447 - AluY SINE Alu -10 301 1 192 302 165 48 chr13 119564829 119565333 -179565 - L2 LINE L2 -428 2886 2324 556 224 56 0 chr13 119565507 119565650 -179248 + L1MC4 LINE L1 7092 7242 -800 920 219 246 35 chr13 119565724 119566231 -178667 - L1MC5 LINE L1 -387 7574 6961 1009 148 6 0 chr13 119566482 119566666 -178232 - AluSg/x SINE Alu 0 304 120 874 328 30 17 chr13 119566670 119567130 -177768 - L1MC5 LINE L1 -1888 5920 5455 403 314 15 6 chr13 119567775 119568006 -176892 + BSR/Beta Satellite Satellite 1 233 -16 7072 50 0 0 chr13 119568190 119569038 -175860 - L1PA5 LINE L1 0 6154 5307 16852 41 2 0 chr13 119569038 119571079 -173819 + L1PA5 LINE L1 3249 5293 -853 5056 208 44 93 chr13 119571392 119572440 -172458 - L1MCa LINE L1 -2137 4289 3191 2336 76 0 10 chr13 119572440 119572754 -172144 - AluY SINE Alu 0 311 1 5056 208 44 93 chr13 119572754 119572960 -171938 - L1MCa LINE L1 -3235 3191 2976 1710 137 41 17 chr13 119572960 119573253 -171645 - AluJo SINE Alu -12 300 1 5056 208 44 93 chr13 119573253 119574233 -170665 - L1MCa LINE L1 -3450 2976 2078 7571 156 118 64 chr13 119574233 119575877 -169021 - MER52A LTR ERV1 0 1755 7 2574 149 40 57 chr13 119576265 119577092 -167806 - L1MCa LINE L1 -4344 2082 1242 1792 158 0 10 chr13 119577092 119577383 -167515 - AluJo SINE Alu -23 289 2 2574 149 40 57 chr13 119577383 119577404 -167494 - L1MCa LINE L1 -5184 1242 1222 1046 192 40 164 chr13 119577404 119577782 -167116 + MLT1A2 LTR MaLR 1 323 -51 2055 96 7 3 chr13 119577782 119578086 -166812 + AluSx SINE Alu 1 305 0 1046 192 40 164 chr13 119578086 119578133 -166765 + MLT1A2 LTR MaLR 323 374 0 2574 149 40 57 chr13 119578133 119578210 -166688 - L1MCa LINE L1 -5204 1222 1082 2497 185 17 58 chr13 119578311 119578961 -165937 + LTR5 LTR ERVK 1 623 -346 918 148 11 42 chr13 119579291 119579480 -165418 + LTR5 LTR ERVK 787 969 0 805 117 0 0 chr13 119581440 119581551 -163347 + AluSq/x SINE Alu 1 111 -201 268 22 44 22 chr13 119581568 119581613 -163285 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 339 286 20 20 chr13 119582380 119582527 -162371 + CT-rich Low_complexity Low_complexity 4 150 0 1487 174 7 4 chr13 119583542 119583817 -161081 + AluJo SINE Alu 22 297 -15 1571 104 4 33 chr13 119583964 119584205 -160693 + AluSx SINE Alu 50 283 -29 704 213 107 15 chr13 119584223 119584329 -160569 - L1MC2 LINE L1 -5 6339 6244 1010 149 154 19 chr13 119584329 119584537 -160361 + MER46A DNA MER2_type 1 236 0 704 213 107 15 chr13 119584537 119584627 -160271 - L1MC2 LINE L1 -100 6244 6125 1228 80 0 0 chr13 119584627 119584789 -160109 - AluSg/x SINE Alu -7 305 144 1942 126 3 7 chr13 119584790 119585091 -159807 + AluSp SINE Alu 14 313 0 2159 105 3 3 chr13 119585104 119585409 -159489 + AluSp SINE Alu 1 305 -8 2180 200 180 46 chr13 119585426 119586240 -158658 - L1MB8 LINE L1 -51 6127 5202 22 0 0 0 chr13 119586949 119586971 -157927 + GC_rich Low_complexity Low_complexity 1 22 0 2050 170 79 26 chr13 119587429 119587463 -157435 - L1MB3 LINE L1 0 6183 6152 1974 95 20 3 chr13 119587463 119587757 -157141 + AluSx SINE Alu 1 299 -13 2050 170 79 26 chr13 119587757 119588176 -156722 - L1MB3 LINE L1 -31 6152 5706 900 207 48 0 chr13 119588182 119588453 -156445 - L1MB8 LINE L1 -2931 3215 2932 2519 41 0 10 chr13 119588455 119588769 -156129 - AluY SINE Alu 0 311 1 1143 168 144 39 chr13 119589730 119590079 -154819 - Charlie2a DNA MER1_type -1306 1556 1156 902 199 182 65 chr13 119590079 119590149 -154749 - LTR37B LTR ERV1 0 468 408 1702 95 0 0 chr13 119590149 119590381 -154517 - AluSc SINE Alu -5 304 73 902 199 182 65 chr13 119590381 119590727 -154171 - LTR37B LTR ERV1 -60 408 3 1143 168 144 39 chr13 119590727 119590787 -154111 - Charlie2a DNA MER1_type -1706 1156 1104 1157 129 0 0 chr13 119592192 119592362 -152536 - AluSg/x SINE Alu -14 298 129 2106 77 17 30 chr13 119592474 119592772 -152126 + AluY SINE Alu 1 294 -17 1882 236 105 26 chr13 119593635 119593847 -151051 - Charlie2a DNA MER1_type -602 2260 2066 2005 123 0 7 chr13 119593847 119594140 -150758 + AluSx SINE Alu 1 291 -21 1882 236 105 26 chr13 119594140 119594547 -150351 - Charlie2a DNA MER1_type -796 2066 1592 899 261 99 36 chr13 119594518 119594890 -150008 - Charlie2a DNA MER1_type -1495 1367 951 * 2069 101 0 14 chr13 119594890 119595186 -149712 - AluSx SINE Alu -20 292 1 899 261 99 36 chr13 119595186 119595339 -149559 - Charlie2a DNA MER1_type -1911 951 809 677 205 0 0 chr13 119595411 119595533 -149365 - FAM SINE Alu -28 157 36 319 224 146 114 chr13 119595701 119595947 -148951 - MIR SINE MIR 0 262 9 319 312 135 76 chr13 119596997 119597799 -147099 + L1M2 LINE L1 515 1363 -5486 231 184 61 0 chr13 119598335 119598384 -146514 - L1MD3 LINE L1 -225 7770 7719 472 274 73 0 chr13 119599662 119599826 -145072 + L1M2 LINE L1 3408 3583 -3265 332 267 57 0 chr13 119600242 119600347 -144551 - MER65A LTR ERV1 -334 111 1 2716 133 19 7 chr13 119600782 119601211 -143687 + MER57B LTR ERV1 1 434 0 2709 173 22 32 chr13 119601232 119601341 -143557 + MER57B-int LTR ERV1 340 449 -4768 2683 96 6 0 chr13 119601341 119601694 -143204 - THE1A LTR MaLR 0 355 1 2709 173 22 32 chr13 119601694 119601757 -143141 + MER57B-int LTR ERV1 449 511 -4706 1004 93 0 0 chr13 119601757 119601896 -143002 - L1PA7 LINE L1 0 6154 6016 2709 173 22 32 chr13 119601896 119602891 -142007 + MER57B-int LTR ERV1 511 840 -4377 759 117 0 17 chr13 119602888 119603008 -141890 + MER57B-int LTR ERV1 1897 2014 -3932 * 271 200 55 0 chr13 119603007 119603062 -141836 + MER57B-int LTR ERV1 2167 2224 -3722 * 2328 105 29 16 chr13 119603053 119603434 -141464 + MER57B-int LTR ERV1 3355 3740 -3797 17673 92 76 57 chr13 119603448 119603860 -141038 + MER57B-int LTR ERV1 4633 5036 -2501 1813 116 0 4 chr13 119603860 119604147 -140751 - AluSx SINE Alu 0 312 27 17673 92 76 57 chr13 119604147 119606584 -138314 + MER57B-int LTR ERV1 5036 7537 0 2643 130 48 0 chr13 119606584 119606998 -137900 + MER57B LTR ERV1 1 434 0 203 156 0 0 chr13 119608555 119608587 -136311 + CT-rich Low_complexity Low_complexity 1 32 0 520 240 36 56 chr13 119608776 119608972 -135926 - MER20 DNA MER1_type -26 193 2 227 306 141 22 chr13 119609514 119609699 -135199 + MIR SINE MIR 1 216 -46 429 321 36 73 chr13 119609792 119610066 -134832 - L3 LINE CR1 -134 1443 1180 2342 100 0 0 chr13 119611073 119611384 -133514 - AluSx SINE Alu -1 311 1 8489 109 8 4 chr13 119613458 119615712 -129186 + L1PA10 LINE L1 3914 6182 0 3104 24 21 3 chr13 119616440 119616816 -128082 - L1PA4 LINE L1 0 6155 5773 2245 55 16 51 chr13 119617113 119617424 -127474 + AluSp SINE Alu 1 300 -13 226 289 91 43 chr13 119617437 119617690 -127208 + HAL1 LINE L1 918 1182 -1325 911 79 0 40 chr13 119618435 119618561 -126337 - AluSg/x SINE Alu -19 293 173 461 222 46 0 chr13 119618590 119618698 -126200 + FRAM SINE Alu 1 113 -63 300 203 29 72 chr13 119619121 119619259 -125639 + (ATGGTG)n Simple_repeat Simple_repeat 1 132 0 213 137 14 55 chr13 119619293 119619366 -125532 + (ATG)n Simple_repeat Simple_repeat 1 70 0 377 168 34 67 chr13 119619375 119619524 -125374 + (ATGGTG)n Simple_repeat Simple_repeat 4 147 0 248 226 12 48 chr13 119620228 119620312 -124586 - MER34 LTR ERV1 -12 530 450 403 339 129 0 chr13 119620674 119620845 -124053 + MIR SINE MIR 51 243 -19 379 297 70 32 chr13 119620959 119621144 -123754 - MARNA DNA Mariner -133 453 262 261 315 39 31 chr13 119621198 119621325 -123573 + MIR SINE MIR 45 172 -90 207 39 0 0 chr13 119622385 119622411 -122487 + MER5A DNA MER1_type 2 27 -162 366 263 59 8 chr13 119622465 119622480 -122418 + MER5A DNA MER1_type 3 16 -173 313 264 66 19 chr13 119622480 119622586 -122312 - MER81 DNA DNA -3 111 1 366 263 59 8 chr13 119622586 119622688 -122210 + MER5A DNA MER1_type 16 126 -63 190 23 23 114 chr13 119630999 119631043 -113855 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 286 147 26 43 chr13 119631379 119631495 -113403 + (CGTG)n Simple_repeat Simple_repeat 1 114 0 222 309 64 11 chr13 119631780 119631874 -113024 - MIR3 SINE MIR -8 200 102 21 36 0 0 chr13 119633438 119633466 -111432 + AT_rich Low_complexity Low_complexity 1 28 0 1232 272 25 2 chr13 119633471 119633868 -111030 + L1MB3 LINE L1 5752 6157 -26 228 360 11 0 chr13 119634284 119634373 -110525 - L2 LINE L2 -533 2781 2692 800 293 86 3 chr13 119636031 119636345 -108553 - MER7A DNA MER2_type -8 338 1 437 247 0 0 chr13 119636535 119636632 -108266 + MER63 DNA MER1_type 940 1036 -24 328 294 0 0 chr13 119636639 119636741 -108157 + (CA)n Simple_repeat Simple_repeat 1 102 0 23 0 0 0 chr13 119637593 119637616 -107282 + GC_rich Low_complexity Low_complexity 1 23 0 569 222 6 0 chr13 119638510 119638686 -106212 + (TG)n Simple_repeat Simple_repeat 1 177 0 239 307 47 14 chr13 119640535 119640663 -104235 + MIR SINE MIR 41 172 -67 667 170 7 59 chr13 119642630 119642765 -102133 - FLAM_A SINE Alu -5 128 1 235 391 27 9 chr13 119643481 119643591 -101307 + MIR SINE MIR 34 145 -117 187 207 0 58 chr13 119645777 119645864 -99034 + (CATG)n Simple_repeat Simple_repeat 3 84 0 216 321 0 0 chr13 119645917 119646082 -98816 + (CA)n Simple_repeat Simple_repeat 2 166 0 929 212 58 35 chr13 119646641 119646873 -98025 - L1M4 LINE L1 -739 5445 5207 2218 104 0 7 chr13 119646873 119647181 -97717 - AluSq SINE Alu -1 312 7 929 212 58 35 chr13 119647181 119647381 -97517 - L1M4 LINE L1 -977 5207 5013 2557 48 0 0 chr13 119652587 119652897 -92001 - AluY SINE Alu -1 310 1 515 296 43 5 chr13 119652948 119653134 -91764 - L1ME1 LINE L1 -46 6120 5928 2974 243 73 47 chr13 119653276 119654182 -90716 - L1ME1 LINE L1 -424 5742 4789 2086 197 17 86 chr13 119654182 119654704 -90194 + MER66B LTR ERV1 1 486 0 2974 243 73 47 chr13 119654704 119655383 -89515 - L1ME1 LINE L1 -1377 4789 4129 376 240 67 13 chr13 119656586 119656736 -88162 + (CGGGG)n Simple_repeat Simple_repeat 1 158 0 225 345 95 12 chr13 119658605 119658773 -86125 - MER5A DNA MER1_type -5 184 3 693 168 117 0 chr13 119659220 119659357 -85541 - AluJb SINE Alu -159 153 1 362 266 75 29 chr13 119662699 119662872 -82026 - L1MD2 LINE L1 -65 6294 6114 764 251 71 50 chr13 119662875 119663254 -81644 - L1MB3 LINE L1 -1 6182 5796 2457 74 3 0 chr13 119663916 119664226 -80672 + AluSp SINE Alu 1 311 -2 354 190 58 7 chr13 119665219 119665321 -79577 - L1MC2 LINE L1 -1 6343 6237 237 292 171 0 chr13 119665486 119665702 -79196 - L1ME1 LINE L1 -2868 3278 3026 468 268 36 30 chr13 119665901 119666069 -78829 - L1ME1 LINE L1 -3140 3006 2838 311 214 46 52 chr13 119667152 119667325 -77573 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 289 270 35 23 chr13 119667535 119667709 -77189 + (GTGTG)n Simple_repeat Simple_repeat 5 180 0 232 302 17 9 chr13 119667776 119667892 -77006 + (GTGTG)n Simple_repeat Simple_repeat 3 119 0 460 126 46 0 chr13 119667997 119668084 -76814 + MSTA LTR MaLR 335 425 -3 225 295 0 0 chr13 119673420 119673481 -71417 - THE1B LTR MaLR -114 250 190 350 312 58 0 chr13 119675593 119675747 -69151 - MER58 DNA MER1_type -2170 250 88 482 261 85 7 chr13 119678378 119678531 -66367 + HERV16 LTR ERVL 561 725 -4271 366 305 67 18 chr13 119678565 119678788 -66110 + HERV16 LTR ERVL 792 1025 -3971 1101 235 77 36 chr13 119679803 119680215 -64683 + MER101 LTR ERV1 10 443 -31 2340 64 13 7 chr13 119680215 119680513 -64385 - AluSp SINE Alu -13 300 1 1101 235 77 36 chr13 119680513 119680543 -64355 + MER101 LTR ERV1 443 470 -4 286 259 0 0 chr13 119680801 119680859 -64039 + L2 LINE L2 3212 3269 -3 220 246 29 14 chr13 119682620 119682689 -62209 + MIR SINE MIR 68 137 -71 344 291 28 35 chr13 119684530 119684671 -60227 - L1ME4a LINE L1 -15 6106 5967 251 253 132 21 chr13 119687643 119687762 -57136 + MIR SINE MIR 49 146 -62 240 221 0 0 chr13 119687882 119687959 -56939 + CT-rich Low_complexity Low_complexity 1 77 0 206 197 82 0 chr13 119688045 119688106 -56792 + (CCCG)n Simple_repeat Simple_repeat 4 69 0 549 185 0 19 chr13 119689319 119689427 -55471 + Tigger7 DNA MER2_type 33 138 -567 251 230 29 23 chr13 119690389 119690563 -54335 + (GGGTG)n Simple_repeat Simple_repeat 4 178 0 1500 157 79 0 chr13 119691115 119691382 -53516 + AluJo SINE Alu 1 288 -24 193 261 108 0 chr13 119692037 119692102 -52796 - L2 LINE L2 -40 3273 3202 257 305 23 50 chr13 119692261 119692469 -52429 - L2 LINE L2 -302 3011 2802 213 282 13 51 chr13 119693505 119693583 -51315 + MER5B DNA MER1_type 6 80 -98 1960 87 3 35 chr13 119693619 119693905 -50993 + AluSc SINE Alu 33 309 0 614 290 49 4 chr13 119694542 119694787 -50111 + L1M4 LINE L1 5450 5705 -473 949 290 95 27 chr13 119694906 119695389 -49509 + L1MB7 LINE L1 5669 6184 0 232 202 64 9 chr13 119695495 119695604 -49294 + (TA)n Simple_repeat Simple_repeat 1 115 0 261 288 34 17 chr13 119696187 119696364 -48534 + (CA)n Simple_repeat Simple_repeat 1 180 0 253 301 35 12 chr13 119696528 119696701 -48197 + (CA)n Simple_repeat Simple_repeat 1 177 0 200 262 168 28 chr13 119697302 119697409 -47489 + MIR3 SINE MIR 11 132 -76 226 159 0 0 chr13 119698865 119698909 -45989 - L1M1 LINE L1 -4424 3141 3098 3191 232 33 11 chr13 119698920 119699865 -45033 - L1M1 LINE L1 -4540 3025 2060 1053 127 10 10 chr13 119699961 119700158 -44740 + L1MB5 LINE L1 5590 5786 -388 663 193 57 51 chr13 119700173 119700349 -44549 + L1MB5 LINE L1 5998 6174 0 22 35 0 0 chr13 119700480 119700509 -44389 + AT_rich Low_complexity Low_complexity 1 29 0 560 239 75 5 chr13 119700742 119700943 -43955 - L1MC5 LINE L1 -777 7184 6970 1768 187 58 0 chr13 119700975 119701323 -43575 - L1MB7 LINE L1 -16 6168 5801 442 337 28 11 chr13 119701397 119701578 -43320 + MIR3 SINE MIR 16 199 -9 223 300 129 0 chr13 119702607 119702747 -42151 + L2 LINE L2 2902 3059 -213 1690 231 94 9 chr13 119704551 119705092 -39806 - LTR39 LTR ERV1 -193 590 4 501 298 0 7 chr13 119705363 119705667 -39231 + (CA)n Simple_repeat Simple_repeat 1 302 0 224 174 0 29 chr13 119705674 119705743 -39155 + (CAGA)n Simple_repeat Simple_repeat 4 70 0 189 292 0 0 chr13 119705781 119705935 -38963 + (CA)n Simple_repeat Simple_repeat 1 154 0 504 287 0 11 chr13 119705986 119706167 -38731 + (CA)n Simple_repeat Simple_repeat 2 180 0 426 297 6 11 chr13 119706183 119706413 -38485 + (CA)n Simple_repeat Simple_repeat 1 228 0 22 0 0 0 chr13 119709436 119709458 -35440 + AT_rich Low_complexity Low_complexity 1 22 0 204 245 50 172 chr13 119711354 119711656 -33242 - L2 LINE L2 -18 3254 2990 510 191 0 0 chr13 119722825 119722956 -21942 + GA-rich Low_complexity Low_complexity 1 131 0 357 355 74 16 chr13 119722958 119723200 -21698 + L1MEd LINE L1 979 1234 -4885 513 164 0 0 chr13 119723207 119723323 -21575 + GA-rich Low_complexity Low_complexity 1 116 0 243 228 76 76 chr13 119724864 119724956 -19942 - L1MB5 LINE L1 -1 6173 6082 371 298 6 22 chr13 119726657 119726838 -18060 + (TAGGG)n Simple_repeat Simple_repeat 2 179 0 369 284 23 23 chr13 119726865 119727041 -17857 + (CAGGG)n Simple_repeat Simple_repeat 4 179 0 353 289 6 36 chr13 119727051 119728005 -16893 + (TAGGG)n Simple_repeat Simple_repeat 1 925 0 350 290 11 28 chr13 119728049 119728225 -16673 + (TAGGG)n Simple_repeat Simple_repeat 2 174 0 317 218 26 0 chr13 119729071 119729149 -15749 - L1MC4 LINE L1 0 8042 7963 396 294 18 1 chr13 119729465 119729641 -15257 - L1MC4 LINE L1 -258 7597 7369 324 227 0 23 chr13 119729968 119730056 -14842 + GA-rich Low_complexity Low_complexity 3 88 0 1711 164 7 13 chr13 119733304 119733608 -11290 - AluJb SINE Alu -10 302 1 260 115 9 34 chr13 119733611 119733773 -11125 - AluJo SINE Alu -166 136 11 1994 157 0 3 chr13 119734461 119734773 -10125 - AluSx SINE Alu -1 311 1 1990 101 0 0 chr13 119734822 119735080 -9818 + AluSx SINE Alu 1 258 -54 552 350 0 3 chr13 119736181 119736524 -8374 + (TG)n Simple_repeat Simple_repeat 1 341 0 1461 131 168 24 chr13 119738071 119738399 -6499 - MSTA LTR MaLR -53 375 1 292 273 0 13 chr13 119738502 119738579 -6319 + (TGGG)n Simple_repeat Simple_repeat 1 76 0 588 168 23 38 chr13 119738580 119739087 -5811 + (TGGA)n Simple_repeat Simple_repeat 1 499 0 203 245 32 26 chr13 119739152 119739307 -5591 + (TGGA)n Simple_repeat Simple_repeat 3 158 0 277 264 31 0 chr13 119739358 119739517 -5381 + (TGGA)n Simple_repeat Simple_repeat 3 166 0 462 168 26 38 chr13 119739547 119739785 -5113 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 581 169 29 0 chr13 119739815 119739951 -4947 + (TGGA)n Simple_repeat Simple_repeat 3 142 0 281 242 31 0 chr13 119739981 119740109 -4789 + (TGGA)n Simple_repeat Simple_repeat 3 134 0 513 250 150 62 chr13 119740285 119740704 -4194 + MER63 DNA MER1_type 310 754 -306 185 345 36 12 chr13 119743521 119743605 -1293 + L3 LINE CR1 909 994 -583 2978 140 89 18 chr13 119743788 119744359 -539 + LTR10E LTR ERV1 1 612 -21 863 233 34 19 chr13 119744521 119744857 -41 + L1P5 LINE L1 5126 5466 -690